TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.404673 %AT, 3766436 nt, 38199 terms. Intergenic: 0.454724 %AT, H2T: 450791 nt, 3311 terms; T2T: 127849 nt, 2536 terms; H2H: 168609 nt, 2238 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|110677421|ref|NC_008209.1| Roseobacter denitrificans OCh 114, complete genome (length 4133097) RD1_0003 1723 - 2871 + | aminomethyltransferase, putative TERM 1 2890 - 2910 + F 95 -10.3 -4.57073 | opp_overlap 2890 GGATGTACATTGAAA GGCGCCTTC CAA GCGGGCGCC TTTTTCGCCACCGTA RD1_0004 2948 - 3556 + | hypothetical protein vanB 3553 - 4539 + | vanillate O-demethylase oxidoreductase, putative RD1_0006 4551 - 5618 + | hypothetical protein RD1_0007 6306 - 5659 - | DNA-binding protein TERM 2 6061 - 6043 - G 76 -5.9 -4.58283 | overlap 6045 GAACCCTTTGAAAAA GGCGGTG AGCGG CACCGAC AGGGCATTGGCCAAC TERM 3 6451 - 6462 + G 72 -2.2 -4.72556 | TTCCACCACTTCGCC CCGA TCCA TTGG TTTTCTGCTTTTTCC araC 6341 - 7435 + | AraC family transcriptional regulator soxG 8100 - 7540 - | sarcosine oxidase, gamma subunit soxA 11044 - 8093 - | sarcosine oxidase, alpha subunit soxD 11328 - 11041 - | sarcosine oxidase, delta subunit TERM 4 11227 - 11215 - G 71 -9.1 -3.76224 | overlap 11219 GCCGTATTCATGAAA CGCAG CGG CTGCG TCGTCGGCCTGCCAG TERM 5 11353 - 11371 + r 71 -5.9 -4.28994 | GCCTCAATGCAGGTT GGGCTGG TTGCC CTGGCCC TTTTCGTCGATCATG soxB 12591 - 11341 - | sarcosine oxidase, beta subunit TERM 6 11846 - 11816 - G 74 -3.8 -4.86731 | overlap 11811 CCCTCCGAAACAAAA GCCTGCAGCACG TGGCTTT CGATCGGCAGGC GCATCTCGGCCTTGG opuAC 12850 - 13797 + | glycine betaine transporter, substrate-binding protein TERM 7 13827 - 13849 + F 87 -13.4 -3.24925 | ATTTAGCACCACTTC CCCGGGCC TTTTTCT GGCCCGGG TTCCTGCTGTCGAAT opuAA 13879 - 14913 + | glycine betaine transporter, ATP-binding protein opuAB 14913 - 16892 + | glycine betaine transporter, permease protein TERM 8 16912 - 16962 + T 75 -11.3 -3.46285 | gap 2, opp_overlap 16910 16907 16909, overlap 16915 16960 TCCTGCGAAACAGCT GCCTCACCCACCGCATTCCGAAACC AAG GGTTTC--AACGCGGTGGGTGATAC TTGATGTTTCAGGTA TERM 9 16915 - 16959 + T 87 -16 -2.8742 | gap 2, opp_overlap 16910 16907 16909, overlap 16912 TGCGAAACAGCTGCC TCACCCACCGCATTCCGAAACC AAG GGTTTC--AACGCGGTGGGTGA TACTTGATGTTTCAG rluA 17639 - 16992 - | ribosomal large subunit pseudouridine synthase A TERM 10 17579 - 17552 - G 70 -3.3 -4.60797 | CGGGCACAGACAAAA GCCCCGCCGGT TTATCC ACCAGCAGCAC TTCGGCGTCTTCATG RD1_0017 20117 - 17670 - | FAD dependent oxidoreductase, putative TERM 11 18854 - 18838 - G 71 -7.9 -4.07687 | opp_overlap 18838 AGGTGGTCGTGAAAA GGTGTGC GCC GCACCCC GCGCGCCGTCGCCTT TERM 12 20161 - 20140 - R 74 -4.3 -4.82901 | opp_overlap 20144, overlap 20142 CTCCGTTCAGAAAAA CCTGCCCTC AAAC GAGGGTATG TCCGGCTGCCAGCAG TERM 13 20163 - 20180 + r 81 -6.9 -4.74103 | overlap 20164 CAAACGAGGGTATGT CCGGCTG CCAG CAGCCGC TTTTTGAGTTCCGCG TERM 14 20164 - 20179 + r 73 -10.4 -3.4398 | overlap 20163 AAACGAGGGTATGTC CGGCTG CCAG CAGCCG CTTTTTGAGTTCCGC RD1_0018 21037 - 20147 - | homocysteine S-methyltransferase, putative TERM 15 20287 - 20323 + g 83 -3 -5.27335 | overlap 20278 20293 CATAGGCGCGCGGCC CCATATCGCGG-CGCGTT TCG AGCGTGTCCACGGT-TGG TTTTTCTTTCAGGAA RD1_0019 23484 - 21034 - | dimethylglycine dehydrogenase, putative TERM 16 22893 - 22905 + g 77 -3.3 -4.87318 | overlap 22894 TGACGACCTTTTCGC AGCGA ATA TCGCC TTTTTCGGTTTTCAC TERM 17 23441 - 23418 - G 71 -8 -4.0162 | TGGCCAGATGATAAA GGGTCGAGGT GCCC ACCACGCCCC CGCCAATAATCACGA RD1_0020 23650 - 23486 - | hypothetical protein RD1_0021 24242 - 23619 - | homoserine/lactone efflux protein TERM 18 24280 - 24247 - RH 74 -6.7 -4.25458 | gap 1 AACCCCATCAATAAA CCGGCGGC-GCGAT GACCCAG ATCGCCACTGCCGG CTCTGCGTAGGGGTT RD1_0022 24811 - 24239 - | DNA-binding protein TERM 19 24882 - 24892 + Gr 88 -6.8 -5.00884 | overlap 24879 AGACATTTTTCACGC CGCA GGG TGCG TTTTTTCCGCCCGAT RD1_0023 24803 - 24910 + | hypothetical protein RD1_0024 25386 - 24931 - | hypothetical protein TERM 20 25036 - 25048 + g 80 -10.5 -4.07568 | opp_overlap 25036 25026 AAATACACCCAGCAA CGCGC CAC GCGCG TTTTCGACCGGCAGC TERM 21 25441 - 25431 - R 72 -2.4 -4.87892 | TGTTAACAAAACAAA TGGC TTA GCCG CGTTCAATCGCAATG RD1_0025 26607 - 25435 - | thiolase domain-containing protein TERM 22 25738 - 25719 - G 71 -7.8 -4.07568 | CTGTCTTTTCCAAAA GTTTCCGG GCGG CCGGAACC GGGGCAGTCGTAAAC RD1_0026 26690 - 27043 + | anti-anti-sigma factor, putative rsbW 27055 - 27501 + | serine-protein kinase, putative TERM 23 28109 - 28119 + G 71 -8.2 -4.13014 | GTGACCATTCCCACA GCGG TTG CCGC TTTTGCCCATCTGGC ggtA 27764 - 29341 + | gamma-glutamyltranspeptidase, putative RD1_0029 29676 - 29350 - | hypothetical protein TERM 24 29993 - 30014 + G 77 -3.7 -4.91109 | gap 1, overlap 29994 29998 GCCTATGGCGTCGTC ACAGTCGCAA TCC TTGCG-CTGG TTTTTGTGCTCAGGC TERM 25 30087 - 30097 + G 73 -4.6 -4.64766 | CCGGTAACATCGGGT TGCC ACT GGCG TTTTTCGCCTATGGC RD1_0030 29762 - 30643 + | auxin efflux carrier family protein RD1_0031 30714 - 31298 + | putative lipoprotein lolA 31864 - 31304 - | outer membrane lipoprotein carrier protein, putative ftsK 34818 - 32002 - | cell division protein FtsK TERM 26 32665 - 32680 + g 76 -5.4 -4.70169 | gap 1, opp_overlap 32662, overlap 32668 AACGACAATATAGGG CAGCGCC ACG GGCG-TG TTTTCTTCGGTCTCA TERM 27 32866 - 32878 + g 76 -6.2 -4.62783 | GACCACCCATTTCAG GGCG ACAAC CGCC TTTTTCGGGTCGGTC RD1_0034 36002 - 34824 - | aminotransferase, putative TERM 28 35046 - 35034 - G 78 -4.7 -4.84274 | overlap 35025 35035 CAACCACAGGAAAAA TCCGG CAT CCGGG CTGGCATAGCCCGGC TERM 29 35265 - 35247 - G 75 -8 -4.16842 | CCCACTGGCAACAAA GCCGGACC GCA GCCCCGGC AGGTTCGACCGTTTG RD1_0035 37439 - 36111 - | amidase, putative TERM 30 36415 - 36389 - G 75 -8.6 -4.1822 | CTTGATGGTAAGAAA CGCGGGCCGC TTCAAGT GCGGCCCAGG CGGCAACATAATCCG TERM 31 37121 - 37143 + g 95 -11.2 -4.56597 | overlap 37122 37131 CGTTTTGCAGCACTT TCGCGTCACG TTC CGGGACGCGG TTTTTCAACAGCAGC TERM 32 37122 - 37142 + g 76 -12.5 -3.33744 | overlap 37121 37131 GTTTTGCAGCACTTT CGCGTCACG TTC CGGGACGCG GTTTTTCAACAGCAG TERM 33 37787 - 37805 + G 78 -4.4 -4.78764 | TACCGATGGCCGCGC GGGAGAGG GAC CATCGCCC TTTTTCATGCATTTC ubiH 37491 - 38753 + | 2-octaprenyl-6-methoxyphenol hydroxylase RD1_0037 39038 - 38853 - | hypothetical protein lonD 39679 - 39035 - | ATP-dependent protease La trx 40624 - 39707 - | thioredoxin, putative xth 41467 - 40679 - | exodeoxyribonuclease III, putative TERM 34 40955 - 40973 + g 75 -3 -4.91109 | CTCGATGGGCGTGTG GCTGACCA CCT TGAGCAGC TTTTTGTGATCCCAG TERM 35 41072 - 41101 + g 77 -3.7 -4.90013 | gap 1, overlap 41098 AAACCAGTCGCGCAT TTCCGTCAGATAAT CGA GTT-TCTGACCGAA TTTTTCGTTCACTTC TERM 36 41616 - 41596 - R 100 -11.8 -5.41143 | GAGCGGGCAAAAAAA GACCGGGC ATAAA GCCCGGCC AAGTCCAACAGGGAG mtrA 42414 - 41728 - | DNA-binding response regulator, putative TERM 37 41942 - 41954 + g 90 -5.5 -5.17488 | ATATTGGTTTCCTTT TCCGT CAG GCGGA TTTTCTTTTCATCTT ribA 42577 - 43665 + | GTP cyclohydrolase II TERM 38 43784 - 43767 - g 71 -6.9 -4.20367 | CGGCGCAAGAAAGAA GGGGACG GGGC CACCCCC ACGGGCATTCACCGG TERM 39 43962 - 43950 - g 78 -4.7 -4.76041 | overlap 43951 CACAGCCACGAAAAA CTGCG CCG CGCGG ATCCCCTGTACGATC RD1_0044 43662 - 44156 + | hypothetical protein RD1_0046 44820 - 44164 - | hypothetical protein TERM 40 44895 - 44872 - R 100 -15.2 -5.07652 | overlap 44853 TTGTCCAAAAGAAAA GGGGCGGACC CAAA GGACCGCCCC AAATTCACGATGTTA RD1_0047 45881 - 44919 - | outer membrane porin, putative RD1_0048 46129 - 46620 + | hypothetical protein TERM 41 48450 - 48427 - g 74 -11.8 -3.53811 | gap 1, opp_overlap 48427 GCCACCTGCCCCAAA GCGCGATCGAA CCT TTCGA-CGCGC TGTTCACCCAAGGCA leuS 46734 - 49280 + | leucyl-tRNA synthetase RD1_0050 49267 - 49746 + | putative lipoprotein RD1_0052 49743 - 50744 + | hypothetical protein TERM 42 51344 - 51305 - g 70 -3.6 -4.62069 | gap 3, opp_overlap 51309 CGCCTATGGCAAAAA CCT-GC-GCCAACGGCCTG CGTTT CAGGCGG-CGGCTGCGAGG TAATCCACCGCCCCG RD1_0053 50763 - 51347 + | glutathione S-transferase family protein RD1_0054 52510 - 51326 - | hypothetical protein TERM 43 52301 - 52283 - G 76 -10.2 -3.72576 | CGCCTGCGCATCAAA GCGCGCGA TCA TCGGGCGC AAAGGCGCTTCAGCC RD1_0055 53841 - 52507 - | mechanosensitive ion channel family protein, putative TERM 44 53646 - 53601 - G 70 -4.6 -4.53036 | gap 3 GCAGAAACATCAAAA CCGTGCGCCGG-GACCGCG-CGA TGA TCGACTCCGCCTCCGCCGC-CGG GGTCAGCAACCGCGT RD1_0056 55948 - 53945 - | hydantoinase/oxoprolinase, putative RD1_0057 57056 - 56013 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 45 56226 - 56205 - G 71 -8.7 -3.76781 | overlap 56193 56195 AAACAGCGCACGAAA CGCCGCA TCATCAAG TGCGGCG AGGTCGGCCAATCGG RD1_0058 57734 - 57069 - | glutathione S-transferase domain-containing protein mtgA 58455 - 57790 - | monofunctional biosynthetic peptidoglycan transglycosylase TERM 46 58508 - 58540 + r 71 -10.5 -3.28712 | opp_overlap 58525 CTGGTTTTACGCTTC GCCATGGCGCCAC AGTAGGC GCGTCGCCATGGC TTGTGAACCGCGCAG gltB 63094 - 58565 - | glutamate synthase, large subunit TERM 47 59366 - 59349 - G 77 -7.7 -4.37886 | gap 1, opp_overlap 59349 59348 CCATCCTCCAGAAAA CGCTGCGC ATC GCGCA-CG ATTTCCGCATCCAGC RD1_0061 63525 - 63091 - | hypothetical protein RD1_0062 63956 - 63522 - | hypothetical protein TERM 48 63927 - 63937 + g 70 -4 -4.64844 | CGCGCCGCACAGGCA TTGA CCG TCAA TTTTCTGTCTGTCGC gltD 65520 - 64087 - | putative oxidoreductase TERM 49 65598 - 65584 - H 70 -2.8 -4.77047 | opp_overlap 65584 CAAAACAGAAATAAA GTCAGT ACT ACTTAC CTATTATCAATAAAA uppP 65746 - 66549 + | undecaprenyl-diphosphatase, putative RD1_0065 67529 - 66546 - | NADH-ubiquinone oxidoreductase, putative TERM 50 66822 - 66810 - G 77 -3.3 -5.00616 | CCGCGCGGCAAAAAA CGGGA TGT TCACG ATCAAACGACGCTTG TERM 51 67382 - 67370 - G 79 -7.7 -4.54047 | GCACGTTACACAAAA CAGGT TCA ACCTG TCCAACAACACCGTA TERM 52 68251 - 68265 + r 85 -7 -4.94058 | overlap 68234 68253 GGTCCCGTCAATTTT CCCCGG GAC CCGGTG TTTTCTTTGAATTGC TERM 53 68253 - 68263 + r 77 -8.2 -4.08189 | overlap 68234 68251 TCCCGTCAATTTTCC CCGG GAC CCGG TGTTTTCTTTGAATT RD1_0067 69538 - 68288 - | sulfatase, putative RD1_0068 70813 - 69950 - | hypothetical protein TERM 54 70370 - 70340 - G 85 -12.5 -3.72051 | TTCAACAATGCCAAA GTCGGGGCCGACA TCAAG TGTCGGCACCGGC GCAACCCGCGCGCGT TERM 55 70627 - 70600 - G 84 -5.6 -5.0133 | gap 1 CACTGTCCGAAAAAA GTTGA-ACGCGGG ACG CCGGCATCTCAAC GCCTTCGGCTGCTGC TERM 56 70884 - 70896 + r 71 -4.8 -4.57073 | CAGGCAGGCGCCGCT CGGT CGATC ACCG TTTTTGCAGCGGCTG RD1_0069 72958 - 70868 - | mechanosensitive ion channel protein, putative TERM 57 71035 - 71055 + g 74 -6.1 -4.5442 | overlap 71037 ACTGCTCTCCGGGTT TTGACGTGA ACT TCACGCCGA TTTTATAGTTGGAGC TERM 58 72068 - 72056 - G 76 -9.1 -4.07885 | GAGCGCTGGCCAAAA CCTGC TGA GCAGG CGCACAAATAGCTTT TERM 59 72179 - 72158 - G 95 -5.7 -5.71295 | AGAGAAAAAGAAAAA CCCGGTCGC CATG GCGTCCAAG GCCCGTGTCGCCACG RD1_0070 73014 - 73127 + | hypothetical protein TERM 60 73518 - 73493 - T 80 -5.3 -4.88228 | ATGGAAGACCAAAAA GGGTGTGACCG CCTG CGATAGCACCC TACCCGATGACAGCA RD1_0071 74429 - 73785 - | hypothetical protein TERM 61 74154 - 74183 + g 73 -4.9 -4.66609 | gap 1 CCTGAGGCAGGCCCT GGGCTGCACGGCGA TCT TCGCCCC-CAGCTC TTTTTCCGTCAGATA RD1_0072 75839 - 74433 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 62 74948 - 74932 - G 71 -9.5 -3.72695 | ATGGGCCGCAGGAAA TCAGACA ACA TGTCTGA GCGGTGATTGTCCAC RD1_0073 76620 - 75850 - | hypothetical protein dld 78467 - 76746 - | D-lactate dehydrogenase TERM 63 78075 - 78101 + g 76 -6.4 -4.56597 | TCCGATCACGGAATG CGGTTGGCGGCC ATA GGGCGCAAGCTG TTTTTCGAGGCCGAA TERM 64 78721 - 78758 + GH 70 -9.9 -3.34715 | gap 1, opp_overlap 78757, overlap 78719 CCAAATTGTGATGCC GTTTTCTC-CCTTGCCCG ACC CGGGCATGGCGAAAAAGC TGTTTGCAGCCGATG TERM 65 78768 - 78757 - gH 76 -5.8 -4.59773 | opp_overlap 78721 78719 GGGCATGGCGAAAAA GCTG TTTG CAGC CGATGCGAAACCGTT RD1_0075 78658 - 79296 + | paraquat-inducible protein A TERM 66 79561 - 79578 + GF 70 -4.1 -4.67353 | AATATGGCAGTATCG GGATTGC GCTT GTGATCC TTTTTGCCTCCGTGG RD1_0076 79254 - 79913 + | paraquat-inducible protein A pqiB 79906 - 81987 + | paraquat-inducible protein B, putative RD1_0078 81988 - 82548 + | putative lipoprotein TERM 67 82578 - 82565 - T 70 -3.1 -4.72272 | GCGTCTGACGAAAAA CCTGA AGTA TCAAG CATCACGTAACCCGT RD1_0079 83775 - 82648 - | aminotransferase, putative TERM 68 84318 - 84346 + G 76 -12.3 -3.37881 | overlap 84314 CGGATTTGACGTGCT GCTGGTGCCGGGC CAT GCCCCGGGCCAGC TTGCCTTTGTCTTGG RD1_0080 83827 - 84579 + | hypothetical protein RD1_0081 84767 - 84576 - | hypothetical protein RD1_0082 84938 - 84780 - | hypothetical protein TERM 69 84898 - 84888 - GH 80 -3.2 -5.05601 | GATCAGATAGAAAAA TACG ATC CGCA ACCACATGACGATGC TERM 70 86353 - 86371 + Gr 73 -10.2 -3.39895 | opp_overlap 86344 AAATGACCGGTGCCG CCGGGTTG GAA CACCCCGG TTGCTTCATGCCACA TERM 71 86430 - 86419 - gR 81 -5.8 -4.77165 | TTGGGGATAAGAAAA TGGC AGAG GCCA GCGATATCTTTGCTT RD1_0083 84933 - 86558 + | glutamate synthase, putative RD1_0084 88468 - 86744 - | sensor histidine kinase, putative TERM 72 88219 - 88197 - G 73 -9.8 -3.57825 | overlap 88199 CTCAGAAAAGACGAA CATGCCCGCG CGT CGCTGGCATA AAGTTGCGCCAGTGC RD1_0085 89027 - 88470 - | RNA polymerase sigma factor TERM 73 88683 - 88673 - G 79 -8.2 -4.48987 | CGCCCACAAGCAAAA GCGC CTC GCGC TGCTCATCCGGCAAT RD1_0086 89191 - 89024 - | hypothetical protein tcrX 89289 - 90098 + | two-component response regulator TERM 74 90122 - 90085 - T 83 -12 -3.6682 | TCTCATCGACGGAAA CACTCACCACCTGAGC CTGCGC GCTCAGCTGGTGGGCG CAAGCTCCGCGTCAT RD1_0088 91029 - 90109 - | ribonuclease BN, putative TERM 75 91000 - 90990 - G 72 -2.4 -4.77157 | overlap 90983 90991 CGAAGGCAGCAAAAA GCGC TTT GCCC AGCAGACCGATTGAA TERM 76 91323 - 91352 + G 79 -8.5 -4.56775 | gap 1 CGTTTTGCCCATGTG GACGC-CTGCCCCT TTC AGGGCCCGCGCGTC TTTTTCGAAAACGCT RD1_0089 91266 - 92525 + | aminotransferase, putative dapE 92563 - 93852 + | succinyl-diaminopimelate desuccinylase panC 94791 - 93937 - | pantoate--beta-alanine ligase panB 95627 - 94788 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase RD1_0094 95873 - 96634 + | hypothetical protein RD1_0095 96769 - 97056 + | hypothetical protein RD1_0096 98264 - 97134 - | acetoin utilization protein, putative TERM 77 98210 - 98185 - G 85 -16.9 -2.8805 | gap 1 ATCACGGTGGATACA CGC-GGCACCCG CAA CGGGTGCCAGCG TCCATAGCTCGAGTG RD1_0097 98445 - 98945 + | acetyltransferase, GNAT family protein, putative TERM 78 99583 - 99599 + G 76 -5.7 -4.65916 | AAAAATTCCTGTCCA CCATCCC TCT GGGGCGG TTTTCTTCGCCTGAA linX 98961 - 99707 + | 3-ketoacyl-(acyl-carrier-protein) reductase RD1_0099 99704 - 100054 + | hypothetical protein RD1_0100 100056 - 101048 + | T4 family peptidase putative dxs 102982 - 101045 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 79 103088 - 103055 - R 100 -14.6 -4.40963 | opp_overlap 103053 103086, overlap 103052 ACCGGGGAAAAAGAA GGGGTCGCATCGAG AACAAG CTCGTTACGACCCC AGGTTCCTGTAGCCA pufC 104319 - 103204 - | photosynthetic reaction center cytochrome c subunit pufM 105317 - 104322 - | photosynthetic reaction center subunit M pufL 106170 - 105319 - | photosynthetic reaction center subunit L TERM 80 106037 - 106023 - G 89 -6.4 -5.01732 | AAGCGCCCCAAAAAA TCAGGA TCG TCCCGA GTAATGCAAAGAAGG RD1_0105 106185 - 106316 + | hypothetical protein TERM 81 106403 - 106356 - T 100 -17 -3.5944 | opp_overlap 106364 ATTGATAGTCTGAAA GCCGGTATTCCGGTGGCGCATC TTGC GATGCGCCGCCAGATTACTGAC CTCCGACGGCGGCTG TERM 82 106364 - 106395 + T 100 -16.6 -3.16564 | opp_overlap 106356 TCTGAAAGCCGGTAT TCCGGTGGCGCATC TTGC GATGCGCCGCCAGA TTACTGACCTCCGAC pufA 106554 - 106396 - | light-harvesting protein B-875, alpha chain pufB 106719 - 106567 - | light-harvesting protein B-875, beta chain TERM 83 106934 - 106916 - R 74 -7.5 -4.12188 | opp_overlap 106924 TCAGTAGGCCGAAAA GATCATC GGCGT GATGATC CGGGCCTGGCTCCAC pufQ 107134 - 106901 - | protein pufQ bchZ 108627 - 107152 - | chlorophyllide reductase subunit Z TERM 84 107234 - 107247 + g 73 -9.5 -3.89822 | ACACGTTCGTCGCCT GCGGC CAAT GCCGC TTTCTCCGCTGCATC TERM 85 107553 - 107568 + g 76 -6 -4.72272 | opp_overlap 107545, overlap 107554 GGATAAAGGCCGGTG CCGGGC CAAA GCCCGC TTTTTGCTCGGCCAG TERM 86 108156 - 108180 + g 74 -7 -4.30719 | opp_overlap 108156 GACCGAGGATATTAA CGCGAGGACG CGCAC CTTCCCCGCG TTTCTTCTCGGGCGG TERM 87 108683 - 108695 + r 83 -10.5 -3.99324 | CGACCATCGCTGCCT CGCGC TGT GCGCG TTTATGGTCATAAAC bchY 110245 - 108716 - | chlorophyllide reductase subunit Y TERM 88 109800 - 109782 - G 71 -6.7 -4.15044 | gap 1, overlap 109783 109786 TCCTTTGGCAACAAA CGCAGCGG CACA CCGCTG-G CTGTCGGCACACAAA TERM 89 110323 - 110312 - R 74 -7.2 -4.07568 | TCCGTTTTTGTAAAA GGCC CGCG GGCC AGGTCTTCCAGCAAT bchX 111448 - 110444 - | chlorophyllide reductase subunit X TERM 90 111139 - 111168 + g 71 -9.3 -3.82083 | gap 1 CCCCAATCTTGACCT CTTCG-CCGGCAAG CTT CTTGCGGGTCGAGG TTTCAATTATGGTCG TERM 91 111322 - 111342 + g 75 -8.3 -4.18197 | CGATACCACCCTTGC CGTAGATCG CGA TGATCTGCG TTTTGGATGCGGGCT bchC 112386 - 111445 - | 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase TERM 92 112485 - 112506 + r 77 -7.4 -4.24294 | AAACTTACATGTCAG TGTGTCAA CTATAA TTGACACA TTTTACATCATTGAT crtF 113620 - 112514 - | hydroxyneurosporene methyltransferase crtE 114518 - 113634 - | geranylgeranyl pyrophosphate synthetase TERM 93 114472 - 114438 - G 76 -12.9 -3.40899 | gap 1 AAGCGCGGAGGACAA CCGTTGCGGCACAGCC CCCC GGCCCTGCC-CAACGG CGACAGCTTGCGCAA crtD 114612 - 116162 + | methoxyneurosporene dehydrogenase crtC 116012 - 117031 + | hydroxyneurosporene dehydrogenase RD1_0117 117165 - 117887 + | hypothetical protein crtK 118389 - 117907 - | CrtK protein crtB 119432 - 118413 - | phytoene synthase ctrI 120976 - 119429 - | phytoene dehydrogenase crtA 121082 - 121798 + | spheroidene monooxygenase bchI 121795 - 122799 + | magnesium chelatase subunit I TERM 94 124117 - 124088 - g 71 -6.2 -4.41616 | overlap 124089 ACTGGTGCAAACAAA GCGCCGTCTGGC CAGCCT GCCCGGCGGCGG CGGCACCCCGCTGGC bchD 122796 - 124454 + | magnesium chelatase subunit D TERM 95 124644 - 124631 - g 91 -8.1 -4.7497 | CGCATTGAGCAAAAA CCACC ATGT GGTGG CCATTGACCTGCCGG bchO 124455 - 125327 + | magnesium-chelatase 30 kDa subunit RD1_0125 125716 - 125483 - | hypothetical protein TERM 96 125902 - 125868 - R 95 -12.9 -4.07568 | opp_overlap 125867 125872 125874, overlap 125874 CGGGGTCTGCCAAAA CAAAAACGCCGCCCC GCGAT AGGACGGCGTCTTCG GTTCAGTTTGTCGGC TERM 97 125896 - 125874 - R 100 -10.5 -5.45802 | opp_overlap 125874 125872 125867, overlap 125868 CTGCCAAAACAAAAA CGCCGCCCC GCGAT AGGACGGCG TCTTCGGTTCAGTTT cycA 126339 - 125920 - | cytochrome c-551 TERM 98 126238 - 126252 + g 73 -5 -4.64598 | overlap 126229 CTGGTGGCAGGACTT GCATTT GTT GAATGC TTTTTCACCTGCTTC hemA 127627 - 126413 - | 5-aminolevulinate synthase TERM 99 127382 - 127420 + g 71 -9.4 -3.76759 | overlap 127383 127417 GCCCGAGATGTTGCG CGTGCCACCGGCACCTGC GCC GTAGGCGTCGATGGCGCC TTTCATGGCGTTGAT TERM 100 127383 - 127419 + g 70 -12.9 -2.85574 | overlap 127382 127417 CCCGAGATGTTGCGC GTGCCACCGGCACCTGC GCC GTAGGCGTCGATGGCGC CTTTCATGGCGTTGA puhE 128438 - 127617 - | PuhE protein TERM 101 127667 - 127698 + g 75 -8 -4.2558 | gap 1 CTTTTGGTGTTGGCT GCTTTGG-GGCGGGT AAC ATCCACCGCCAGAGC TTTTCGTCCGGGATC TERM 102 128454 - 128482 + r 71 -4.6 -4.57073 | gap 1, overlap 128461 TTCAGTAGGCAGGCC GCATGAGGGTCTC GGTT GGGACC-TTGTGC TTTTTCGCCGGGATC acsF 129477 - 128440 - | magnesium-protoporphyrin IX monomethyl ester cyclase TERM 103 129234 - 129250 + g 73 -5.1 -4.59773 | TGCAGGAGCTGATCA GGAAATC GAG GAATTCC TTTTTCAGCGTCGGC RD1_0130 129848 - 129552 - | hypothetical protein puhC 130336 - 129869 - | PuhC protein puhB 130980 - 130342 - | photosynthetic complex assembly protein TERM 104 130438 - 130404 - G 72 -12.9 -2.9914 | gap 2, overlap 130431 CAGTGGGGACAGAGA CGCGCGCCT-CTG-CGG CCT CCGACAGCAGCCGCGCG ACACGCTCCGCATCC TERM 105 130918 - 130954 + g 74 -13.1 -3.25204 | gap 1, overlap 130937 130939 CCAGAGGATATTCTC GCCC-TTGGGGGGCTT GGCGGG GAGCCCCTCAACGGGC TCTATTTCAAAATCG puhA 131835 - 131068 - | photosynthetic reaction center subunit H lhaA 133291 - 131858 - | LhaA protein bchM 134016 - 133288 - | Mg-protoporphyrin IX methyl transferase chlL 134915 - 134016 - | protochlorophyllide reductase iron-sulfur ATP-binding protein bchH 138540 - 134968 - | magnesium chelatase subunit H TERM 106 138504 - 138517 + g 73 -9.5 -3.86346 | CCACCACGCGATAGC CGGGC AGTT GCCCG TTTATGCCAACCTCA bchB 140071 - 138530 - | light-independent protochlorophyllide reductase subunit B bchN 141354 - 140068 - | light-independent protochlorophyllide reductase subunit N TERM 107 140113 - 140095 - G 76 -12.4 -3.35813 | CTCCACTTTAAGCAA TCCGGCGC GGC GCACCGGA CGGGAAAAGAGCCCG TERM 108 141233 - 141223 - G 74 -3.2 -4.78107 | overlap 141224 CACGACGAGGAAAAA CGCA TCC TGCA TCTTGCGGTGCAACC bchF 141875 - 141351 - | 2-vinyl bacteriochlorophyllide hydratase ppa 142189 - 142971 + | regulatory protein Ppa TERM 109 144182 - 144170 - g 78 -10.5 -3.86202 | CGGGACGATATCAAA CGCCG CTC CGGCG GAGCCTGCGCGCAAT ppsR 142968 - 144395 + | transcriptional regulator PpsR bchG 144450 - 145349 + | bacteriochlorophyll/chlorophyll a synthase RD1_0145 145349 - 146647 + | PucC family protein, putative bchP 146652 - 147830 + | geranylgeranyl hydrogenase idi 147827 - 148357 + | isopentyl-diphosphate delta-isomerase RD1_0148 148820 - 149530 + | transglycosylase SLT domain-containing protein flhA 149533 - 151617 + | flagellar biosynthesis protein FlhA fliR 151614 - 152384 + | flagellar biosynthetic protein FliR flhB 152381 - 153469 + | flagellar biosynthesis protein FlhB TERM 110 153597 - 153586 - g 78 -2.2 -5.15969 | GCGCAACTCAAAAAA CTGG ACAC CCAA TTGCGCAATTCGCAA RD1_0153 153466 - 153861 + | hypothetical protein RD1_0154 154609 - 154208 - | integrase catalytic subunit RD1_0155 155277 - 155014 - | hypothetical protein RD1_0156 156426 - 155374 - | hypothetical protein RD1_0157 156373 - 156639 + | hypothetical protein RD1_0158 156675 - 157487 + | integrase catalytic subunit TERM 111 157551 - 157566 + T 78 -2.5 -5.1675 | AGAACAGAGCCGCTC CCGAT GCCAAA GTCGG TTTTTTCCTGCGTCG TERM 112 159482 - 159493 + T 77 -7.2 -4.27316 | overlap 159474 ATGGCAAGGCGGCTT CGGC GGTC GCCG TTTTCAATTACGACA flaF 159929 - 159558 - | flagellar biosynthesis regulatory protein FlaF TERM 113 159857 - 159871 + g 74 -3.4 -4.83169 | overlap 159859 CGATCACCTCATACT CAGTGC TGC GCGCCG TTTTTATCGGGGCCT TERM 114 159960 - 159997 + r 77 -8.3 -4.07568 | opp_overlap 159959 159960, overlap 159963 AAAGTTTCAGAGAAT TGGGATCAGGGGCGCGA ATGT TCGCGCCCCTGAAATAG TTTTAGCGGAAGAGA TERM 115 159963 - 159994 + r 91 -14.4 -3.08032 | opp_overlap 159960 159959, overlap 159960 GTTTCAGAGAATTGG GATCAGGGGCGCGA ATGT TCGCGCCCCTGAAA TAGTTTTAGCGGAAG RD1_0160 161250 - 160000 - | hypothetical protein RD1_0161 161818 - 161459 - | hypothetical protein cheL 162113 - 161811 - | chemotactic signal-response protein, putative TERM 116 162541 - 162531 - g 71 -8.2 -4.09739 | overlap 162520 162521 GCAAGGCGGCGAAAA CGCC AGA GGCG GAAAGCAAGACATCC TERM 117 162720 - 162662 - g 95 -19.8 -3.3353 | gap 1, opp_overlap 162675, overlap 162718 GGCGTGACAAAGACA GCGGTTTCAGCAACCTCGGCCG-CAGA GGCTTT TGTGACGGCCAAGGCTGCTGAAAACGC GGCGCTGTCGGCTTC TERM 118 162789 - 162765 - g 89 -6.4 -5.07107 | gap 1, overlap 162766 162767 GAAATGCTGAAAAAA GCGCGGTAGTG GACC CACAACCGC-C ACGCACATCGGTGTT RD1_0163 162209 - 163546 + | flagellar hook-length control protein flgD 163556 - 164236 + | flagellar basal body rod modification protein RD1_0165 165567 - 164233 - | oxidoreductase, putative TERM 119 164648 - 164636 - G 95 -2.6 -5.64421 | ATGCCAAACAAAAAA CGCC GGTCT GGCA TCAAACGGAAGTAAT TERM 120 165034 - 165022 - G 73 -4.7 -4.60924 | overlap 165023 165024 CAAAGCCCCGAAAAA CGCCG GAC CGCCG GTCATACCCAAGCCG potI 166385 - 165567 - | putrescine ABC transporter, permease protein potH 167257 - 166382 - | putrescine ABC transporter, permease protein TERM 121 166482 - 166459 - G 70 -4.5 -4.44797 | opp_overlap 166468, overlap 166462 GGATCAACAGCAAAA CGATGGCGA CAGCGC TGGCCACCG GCCAGTCGCGGTTGT TERM 122 166468 - 166493 + g 77 -11.1 -3.62224 | gap 1, opp_overlap 166459 166462 GCAAAACGATGGCGA CAGCG-CTGGCC ACC GGCCAGTCGCGG TTGTTAAAGAACTCT TERM 123 166606 - 166619 + g 74 -5.9 -4.56597 | ACACGAGGAAACTGC CGGCG ATGA TGCCG TTTTTCGACAGCGGG potG 168422 - 167295 - | putrescine ABC transporter, ATP-binding protein TERM 124 168466 - 168485 + r 86 -10.6 -4.19953 | opp_overlap 168466 CAGGCAGATTGAAAA GGCGGCAC AATT GCGCCGCC TTTTAGGGTTAGATG TERM 125 168485 - 168466 - R 100 -12.8 -4.24204 | opp_overlap 168466 CAGGCAGATTGAAAA GGCGGCAC AATT GCGCCGCC TTTTAGGGTTAGATG potF 169584 - 168502 - | putrescine ABC transporter, periplasmic putrescine-binding protein RD1_0171 169773 - 170432 + | transcriptional regulator, putative RD1_0172 170510 - 171907 + | putative aminotransferase TERM 126 171975 - 172004 + F 74 -10.7 -3.54129 | opp_overlap 171971 171970, overlap 171996 GTGCGGATAATCCGA CAGCCTGCATGAT CCAC GTCATGCGGGCCG TTTGCCGCGCATCTC RD1_0173 172145 - 173260 + | polyamine ABC transporter, ATP-binding protein, putative RD1_0175 173380 - 174486 + | ABC transporter, substrate-binding protein, putative TERM 127 174534 - 174510 - f 90 -17.2 -2.64616 | overlap 174488 174514 GCGTGACTGAGATCA GGAAGGGCGG TGCAT CCGCCCTTCC CACAAGAATAAAAGG TERM 128 174530 - 174514 - f 71 -10.8 -3.25223 | overlap 174488 174510 GACTGAGATCAGGAA GGGCGG TGCAT CCGCCC TTCCCACAAGAATAA TERM 129 174819 - 174797 - g 74 -5.5 -4.56729 | gap 1 AGGAAAACATGAAAA TCCGACAGGC AAAC GCC-GACGGA TCCATACTCGTTGTG RD1_0178 174559 - 174846 + | hypothetical protein TERM 130 176249 - 176275 + G 74 -12.3 -3.18849 | overlap 176248 TCCCGCAATCCGTGC CGGGGATCGGC GCGGG GTCGATCCTCG TGTTCATCCTGTCCA RD1_0179 174850 - 176490 + | ABC transporter, permease protein, putative TERM 131 176519 - 176532 + F 87 -8.1 -4.56961 | TGACACCTGTATCCC GGACG GAGC CGTCC TTTTATGTCCCTGTT RD1_0180 176830 - 177672 + | ABC transporter permease protein, putative TERM 132 177755 - 177703 - T 100 -18.7 -4.36914 | gap 4, overlap 177682 177680 177679 CGGTTTTGCACAAAA GCGTTGACGCG-CCCCCCTTGCTGCCG GAT CAGC-GCAAGGGGGGTCG-GTCA-CGC GGCACAGATCATCGC TERM 133 177812 - 177785 - T 74 -9.8 -3.61715 | gap 1, opp_overlap 177811 CAGTTTTTGCAACAA GGCGGAGGA-GGC ATA GCCATCCGCCACC AGACCCCGGTTGCGT RD1_0181 179119 - 177764 - | transglycosylase, putative TERM 134 177837 - 177849 + g 75 -7.7 -4.17048 | opp_overlap 177837 TTGCGTTGAAAAGCA CGGAT CGC ATCCG TTGTTTTGGGCCCGA TERM 135 179503 - 179463 - g 75 -8.3 -4.18197 | gap 1, opp_overlap 179473 ATGCCCTACGGAAAA CTGCCTGCCATCCG-CGC AGGGGA GCGGCTGATTGCAGACAG CGACCGTATTCAGAC RD1_0182 179316 - 180008 + | hypothetical protein rnr 182260 - 180005 - | ribonuclease R TERM 136 180301 - 180267 - G 76 -7.1 -4.54727 | overlap 180269 GCGTCGAAATGAAAA TACTCGTTGCCGATG GAGCG CATCGGCACCAAGCC ATCCGCCCCCGTCTC TERM 137 180299 - 180269 - G 82 -11.9 -3.88396 | overlap 180267 GTCGAAATGAAAATA CTCGTTGCCGATG GAGCG CATCGGCACCAAG CCATCCGCCCCCGTC RD1_0184 182865 - 182266 - | hypothetical protein TERM 138 182364 - 182354 - G 70 -3.2 -4.68424 | TAAGCCACTGAAAAA TCAC CAA GCGA GCGCACCGTATCGGC dapE 184007 - 182862 - | succinyl-diaminopimelate desuccinylase TERM 139 183344 - 183327 - G 85 -5.5 -5.02074 | opp_overlap 183327 183326 CGAGGGGTCAAAAAA CTCGGTG CCCT CATCGAG CTTATGGCTGGCCAG RD1_0186 184428 - 184075 - | hypothetical protein RD1_0187 185316 - 184438 - | hypothetical protein RD1_0188 185318 - 185413 + | hypothetical protein TERM 140 185433 - 185414 - T 89 -13.6 -3.63341 | AACACGCTGGAATAA TTGGGGCG AAAC CGCCCCAA TCAATAACACGGCGT dapD 186281 - 185454 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase RD1_0190 186453 - 187289 + | hypothetical protein RD1_0191 188122 - 187382 - | protein-disulfide isomerase, putative TERM 141 187704 - 187688 - G 70 -4.3 -4.56597 | overlap 187658 187690 187702 187703 TTCTGCGTCGAAAAA CCGTGCC GCC AGAACGG CCTGCGCACTGCGCC TERM 142 187921 - 187888 - G 84 -11.5 -4.07568 | opp_overlap 187888 187883 187905 CCTCTGGCCCGAAAA GCGCCACGCAGGGCG ATCC CGCCCGTTGCGGCGC TGGTGTTGATGGGTC RD1_0192 189306 - 188122 - | hypothetical protein TERM 143 188691 - 188701 + g 71 -6.8 -4.1585 | overlap 188671 TGGCGATTTTCATCG CGTC ACG GACG TTTTCAAAATTATAA TERM 144 189393 - 189373 - R 100 -8.1 -5.52079 | AGATCAAAAGAAAAA GCACCGCCC GCC GGGCCGGGC CTTGCGCCACGTCCG RD1_0193 189947 - 189417 - | hypothetical protein ansA 190121 - 191101 + | L-asparaginase II serB 191984 - 191109 - | phosphoserine phosphatase, putative TERM 145 192442 - 192421 - g 70 -3.6 -4.62336 | gap 1 ATTTGATCTGAAAAA GCTG-GCGG ATGCA CCGCTCGGC AGGTCGCACCGTGCA serC 192308 - 193471 + | phosphoserine aminotransferase serA 193514 - 195109 + | D-3-phosphoglycerate dehydrogenase TERM 146 195123 - 195160 + T 72 -12 -2.71001 | overlap 195122 AAATTGCGCGTTTCA GGGTGAGGCAGGGGCG CTTTGA TGCCTTTGCCTTGCCC ATTGGTTTGCGGGTC tdh 196205 - 195174 - | L-threonine 3-dehydrogenase kbl 197401 - 196214 - | 2-amino-3-ketobutyrate coenzyme A ligase TERM 147 197534 - 197520 - R 74 -4.9 -4.81083 | overlap 197522 CTGAACCACCAAAAA GGCGC GTGCG GCACC GATTGCCCTGATCTG RD1_0200 198059 - 197496 - | DNA-binding protein bktB 198181 - 199359 + | beta-ketothiolase ubiB 200916 - 199369 - | ubiquinone biosynthesis protein UbiB ubiE 201669 - 200917 - | ubiquinone/menaquinone biosynthesis methyltransferase UbiE TERM 148 202198 - 202184 - g 70 -4.2 -4.56597 | opp_overlap 202184, overlap 202186 202187 202189 CCGGCGCCGGAAAAA CACGAC CAT GTGGTG TTCCATATGGCCAAT TERM 149 202438 - 202448 + G 70 -4.6 -4.56597 | GGGCAATATCTATGT GTGC GAG GCGC TTTTTCGCGCAAAAA mutM 201887 - 202738 + | formamidopyrimidine-DNA glycosylase RD1_0205 202803 - 203579 + | enoyl-CoA hydratase/isomerase family protein RD1_0206 203608 - 204015 + | hypothetical protein rpsT 204187 - 204450 + | 30S ribosomal protein S20 TERM 150 204492 - 204478 - f 86 -7 -5.07486 | opp_overlap 204478 TATGGTTAATAAAAA CGTCGC TCA GCGGCG TTTTTTTTATGCCGA TERM 151 204478 - 204492 + F 100 -9.2 -5.93809 | opp_overlap 204478 TATGGTTAATAAAAA CGTCGC TCA GCGGCG TTTTTTTTATGCCGA TERM 152 205258 - 205219 - g 71 -9 -3.79519 | AATGCCACCACGAAA CCCGCGCGTCCGGCACAG GCGA CCGCCCCGCGCGCGCCGG CTGAGAAAACACCGC dnaA 204958 - 206322 + | chromosomal replication initiation protein TERM 153 206363 - 206329 - f 80 -5.6 -4.91459 | overlap 206331 GAAGAGTGACAAAAA GAGGTCTGCGCGCC CTCATCT GGCCTGCAGACCTT GACGCCCTGCCGTTA TERM 154 206361 - 206331 - f 74 -8.2 -4.06785 | overlap 206329 AGAGTGACAAAAAGA GGTCTGCGCGCC CTCATCT GGCCTGCAGACC TTGACGCCCTGCCGT dnaN 206464 - 207582 + | DNA polymerase III subunit beta recF 207640 - 208740 + | recombination protein F RD1_0211 208737 - 209357 + | amino acid transporter LysE TERM 155 209881 - 209897 + G 70 -10.1 -3.53012 | opp_overlap 209871 GTAAAGAGCACGTCG CCCGCTT TGA AGGCGGG TTTACGACCAGGCAC TERM 156 210221 - 210198 - g 85 -8.8 -4.58663 | opp_overlap 210206, overlap 210203 210205 ATCACCGGGGAAAAA GACGACATCG GCGT CGAAGTCGCC ATGTGGTGGAACGAC gyrB 209436 - 211850 + | DNA gyrase subunit B RD1_0213 212263 - 211946 - | thioredoxin, putative TERM 157 212322 - 212306 - R 70 -9.3 -3.72576 | GGCGTTGGCAGCAAA GGGCAGC GCA GCGGCCC CTGCGGTGAGCAAAA ccdA 213091 - 212378 - | cytochrome c biogenesis protein, putative TERM 158 213340 - 213318 - g 71 -7.7 -4.09864 | opp_overlap 213323, overlap 213320 AGCGACGCGGCAAAA TATGACGCG TCCTG CGCGTCATC TGGCTCGACCAAACG TERM 159 213338 - 213320 - g 73 -10.3 -3.64716 | opp_overlap 213323, overlap 213318 CGACGCGGCAAAATA TGACGCG TCCTG CGCGTCA TCTGGCTCGACCAAA TERM 160 213514 - 213527 + G 74 -5.9 -4.55287 | opp_overlap 213497, overlap 213515 GCGCCTCATCCAATG TCGCG CGCG CGCGG TTTTCTGTGGATGAG RD1_0215 213264 - 214499 + | hypothetical protein TERM 161 215462 - 215495 + G 74 -7.3 -4.37886 | overlap 215463 215482 TGATTGTCGGCGAGC AGCCGGGCGATCAGG AGGA TCTGATCGGGCGGCC TTTTGTCGGGCCTGC RD1_0216 214501 - 215940 + | uracil-DNA glycosylase, putative idhA 216975 - 215980 - | myo-inositol dehydrogenase fba 217827 - 216979 - | fructose-bisphosphate aldolase, putative TERM 162 217686 - 217647 - G 71 -7.8 -4.08394 | gap 1, opp_overlap 217648, overlap 217609 ACATCTTGCCCAAAA CCGGCAGGGGCGT-GTG TTTGCGG CACGACGGCCCCGCCTG AAGGATCACGGGCAG RD1_0219 218666 - 217824 - | hypothetical protein RD1_0220 219645 - 218671 - | pfkB family kinase, putative iolD 221534 - 219669 - | acetolactate synthase TERM 163 220361 - 220374 + g 73 -9.5 -3.92659 | opp_overlap 220356 GCGCATAGGAGTTTG GCCGG TTGC CCGGC TTTACGTTTTCCGCC TERM 164 221613 - 221635 + H 74 -2.1 -5.00884 | gap 1, overlap 221614 221616 CATTTATAGATACCC G-TGTTGCAA CCGG TTGCAATATC TTTTTTGGGGACAGT TERM 165 222356 - 222370 + G 71 -5.6 -4.34482 | opp_overlap 222356, overlap 222362 GTGCCGTTTCACGAA TGGCGC GAT GGGCCA TCTTTTTTTCAGCCG TERM 166 222362 - 222372 + G 91 -5.4 -5.40072 | opp_overlap 222356, overlap 222356 TTTCACGAATGGCGC GATG GGC CATC TTTTTTTCAGCCGCA RD1_0222 221652 - 222755 + | oxidoreductase, putative RD1_0223 222774 - 223670 + | hypothetical protein TERM 167 223915 - 223899 - g 75 -7.9 -4.18506 | GGAGGGGGAAAAGAA CCACCCG GAT CGGCTGG ACCTGATCACCGTGG RD1_0224 223684 - 224817 + | oxidoreductase, putative TERM 168 225478 - 225468 - g 71 -5.4 -4.28994 | CAGCATTGATGAAAA GCAT TTC ATGC GTCTGCAATTCGAAG RD1_0225 224950 - 225585 + | cyclic nucleotide-binding domain-containing protein TERM 169 226157 - 226145 - g 70 -3.3 -4.58283 | overlap 226146 CAACTGCTTTAAAAA CGGCA TCC TGCCC ATTGCCCTGCCGCAA leuD 225804 - 226409 + | isopropylmalate isomerase small subunit TERM 170 226564 - 226527 - g 73 -10.5 -3.63744 | opp_overlap 226526 226527, overlap 226525 GCTGGTTTCAAAAGA CCCGTGATCTGCCGGAT GCGT ATCCGGAAAGTCGCGGG ATTTCGAAACGTGCG RD1_0227 226454 - 227707 + | hypothetical protein leuB 227780 - 228886 + | 3-isopropylmalate dehydrogenase TERM 171 228978 - 228940 - f 74 -10.8 -3.54424 | GGTCATCGGCCTAAA GCGTCTGGGCAGCCCGCA TTT TGCGGGCCGCTTCCACGC GTATGAAAAGGTCAC TERM 172 229111 - 229126 + G 70 -3.2 -4.60487 | overlap 229113 GGGGTCCAGCTATTC CCCGAT TCAG ATCGTG TTTTTCGGCGTGGTG TERM 173 229809 - 229830 + G 76 -5.7 -4.63526 | opp_overlap 229802 CCACGATAGCCGGTT CCGCGGTCA TCAT TGCCAGCGG TTTGTTTATCGTTCT RD1_0229 228998 - 230002 + | integral membrane protein, putative TERM 174 230110 - 230126 + T 75 -11.5 -3.32521 | overlap 230103 CAATCGACCTGGCTG CCCGTCG TTA CGGCGGG TTATGACACTGTGAT RD1_0231 231901 - 230261 - | oligopeptide ABC transporter, periplasmic binding protein, putative TERM 175 231300 - 231322 + g 76 -6.2 -4.62069 | opp_overlap 231300 231299 GGATAGTCCGAAAAG CCCGCGATCA GCG TGATGTCGGG TTTTTCAAGTACCAA RD1_0232 232120 - 233331 + | HAMP domain-containing protein RD1_0234 233606 - 234763 + | LacI family transcription regulator TERM 176 235037 - 235047 + G 84 -5.4 -4.92757 | overlap 235045 ATGATGCTGCAGTCA TTCC GAT GGAA TTTTATTCTTGGTGG TERM 177 235619 - 235649 + G 100 -13.3 -4.26344 | gap 1, overlap 235640 CCGCGCTTGAACGCC GGGC-GAGCAAGCG ATTG CGCGTGCTCAGCCC TTTTGATCCGGCTCT RD1_0235 234760 - 235971 + | hypothetical protein TERM 178 235998 - 236054 + T 75 -6 -4.62069 | gap 2, opp_overlap 235997 235998, overlap 236000 236038 AAATACCTGAAACAT CGAGTATCACGTAACGC-GT-TGAAATC CTT GATTTCAGGCAGCGTTACGCGATTCAGG TTTTTCGCATGACGC RD1_0236 236796 - 236071 - | hypothetical protein RD1_0237 237319 - 236804 - | hypothetical protein TERM 179 236873 - 236856 - G 71 -9.1 -3.83026 | opp_overlap 236864, overlap 236860 TGCCCGGACATCAAA CGCAGCA GGGT TGCCGCG CGGCTGACCTGTTCG RD1_0238 237454 - 238695 + | oxidoreductase, FAD-binding, putative RD1_0239 238716 - 239705 + | peptide ABC transporter, solute-binding protein RD1_0240 239769 - 240293 + | hypothetical protein RD1_0241 240274 - 241608 + | TRAP dicarboxylate family transporter, DctM subunit RD1_0242 241608 - 242537 + | hypothetical protein RD1_0243 242542 - 243276 + | allophanate hydrolase subunit 1, putative TERM 180 244081 - 244115 + G 71 -7.7 -4.10552 | gap 1 CCTGCGATCTGGCAC GCGTTGCGCAG-GCCC CCGT GGGCGCACCGCTACGC TTTCGTTTCGTGACG RD1_0244 243273 - 244295 + | allophanate hydrolase subunit 2, putative RD1_0245 244308 - 245078 + | hypothetical protein TERM 181 245114 - 245137 + F 73 -5.2 -4.57073 | gap 1 TCCTTGGTTGACTAC CGGTCACCTGC AGG GCTGG-GATCG TTTTTGCGCGCACTG iorA 245288 - 245749 + | isoquinoline 1-oxidoreductase, alpha subunit TERM 182 245801 - 245840 + G 70 -9.9 -3.51825 | gap 1, opp_overlap 245801 245799, overlap 245808 AACGCAGATGCAACA GGCCCCTCGCGCCGCGCC TTTCT GGC-CGGTGCCACGGGTC TTGTCGTTGCCATGG TERM 183 247442 - 247457 + G 72 -11.8 -3.30771 | ATCACGCAGGACCGT CCGCGC GATC GCGCGG TTCTGGAACGTGTCG iorB 245753 - 247936 + | isoquinoline 1-oxidoreductase, beta subunit TERM 184 247982 - 247953 - f 76 -10.7 -3.68359 | opp_overlap 247980 247981, overlap 247965 CGCGCAAAACCATAA CACCAAGGCAAAG CGCG CAGTGCCTTGGTG GCGGTGGGTCGAGTT araC 248152 - 249030 + | AraC family transcriptional regulator TERM 185 249946 - 249958 + G 70 -3.3 -4.59109 | overlap 249947 TTCTTGCAGAATGCG CCCAG AGA CTGGA TTTTTACGCGCTCTG RD1_0249 249157 - 250302 + | AraC family transcriptional regulator RD1_0250 250459 - 251688 + | acyl-CoA dehydrogenase, putative TERM 186 251733 - 251754 + T 100 -13 -4.71828 | TGATCGCCCCCCTGG CCAGCCGC ACCTGA GCGGCTGG TTTTGTTCATCCGGT fliI 253581 - 252232 - | flagellum-specific ATP synthase TERM 187 253212 - 253233 + g 71 -6.5 -4.21275 | gap 1, overlap 253218 TCCGCAGGCTCCTTG CCTCTGC-GC CGC GCAGCAGCGG TTTTCCGTCAATTGG flgB 253663 - 254061 + | flagellar basal body rod protein FlgB flgC 254075 - 254464 + | flagellar basal body rod protein FlgC fliE 254518 - 254844 + | flagellar hook-basal body protein FliE TERM 188 255054 - 255073 + G 83 -5 -5.14563 | TGTCGATGGGCTTCA TGACACAA ACAC TGGTGTCA TTTTTTCATGAACAG fliQ 254846 - 255115 + | flagellar biosynthetic protein FliQ flgF 255118 - 255831 + | flagellar basal body rod protein FlgF TERM 189 256323 - 256337 + G 78 -10 -3.92746 | overlap 256321 TCCATCAACACATCC GGCGAA GTT TTCGCC TATTTTTCAGATGCA flgG 255861 - 256646 + | flagellar basal body rod protein FlgG flgA 256643 - 257065 + | flagellar basal body P-ring biosynthesis protein FlgA flgH 257075 - 257806 + | flagellar basal body L-ring protein RD1_0261 257816 - 258316 + | hypothetical protein RD1_0262 258378 - 258602 + | transposase, putative RD1_0263 258705 - 258971 + | hypothetical protein RD1_0264 259000 - 259518 + | integrase catalytic subunit fliP 260636 - 259899 - | flagellar biosynthesis protein FliP fliN 260926 - 260633 - | flagellar motor switch protein FliN, putative RD1_0267 261518 - 260919 - | ABC transporter, ATP-binding fliF 263140 - 261518 - | flagellar MS-ring protein TERM 190 263299 - 263288 - g 74 -7.2 -4.36343 | CAACCAATGAAGAAA GCGC AGAA GCGC CAAAATCGGGCAAGT fliL 263263 - 263754 + | flagellar basal body-associated protein FliL TERM 191 263935 - 263925 - g 71 -6.8 -4.2717 | overlap 263926 ACGATTTGACCAAAA CGCT CGC AGCG GCCCAGAGTACAGCT RD1_0271 263765 - 264133 + | hypothetical protein RD1_0272 264145 - 264738 + | hypothetical protein motA 264805 - 265674 + | flagellar motor protein MotA TERM 192 266612 - 266601 - g 75 -2.2 -4.87786 | TTAATGCCAGAAAAA GTAC TGGC GCAC GCGCGTTTGCAGCTT RD1_0274 265671 - 267926 + | hypothetical protein RD1_0275 268321 - 268422 + | hypothetical protein RD1_0276 268503 - 268964 + | integrase catalytic subunit RD1_0277 270537 - 269452 - | ABC transporter ATP-binding protein RD1_0278 271325 - 270534 - | spermidine-ABC transporter, permease component, putative TERM 193 270834 - 270801 - G 70 -3.7 -4.59773 | gap 1, opp_overlap 270807 270821 GGTGATGCGCAAAAA GGCG-ATGATCGGGTC CGC GCCCAGATCGCGCGCC GCCTCAATCTGGCTT potB 272299 - 271322 - | spermidine/putrescine transport system, permease protein, putative TERM 194 272362 - 272330 - R 89 -13.3 -3.76413 | opp_overlap 272329, overlap 272331 GTGGAAAAGCTCAAA GGCCCCGCCCGCC GCAAATG GGCGCGCGGGGCG GTATTACAAAAGGAT TERM 195 272361 - 272331 - R 90 -16.8 -2.85366 | opp_overlap 272329, overlap 272330 TGGAAAAGCTCAAAG GCCCCGCCCGCC GCAAATG GGCGCGCGGGGC GGTATTACAAAAGGA potD 273483 - 272377 - | spermidine/putrescine-binding periplasmic protein, putative TERM 196 272846 - 272868 + g 70 -3.2 -4.60487 | overlap 272853 ATCAGGAATTGCTTG GCCTCCTCGA CGA TGGCGGCGGC TTTTTCCGGATCGTC RD1_0281 274634 - 273528 - | dehydrogenase, putative RD1_0282 275218 - 274631 - | hypothetical protein RD1_0283 275697 - 275218 - | hypothetical protein RD1_0284 277133 - 275694 - | oxidoreductase, putative TERM 197 276036 - 276076 + g 89 -12.6 -4.11484 | gap 1, opp_overlap 276062 CTGTTCATCCTCCGG CGGGGTGTAGACGTCCTGC CACA GCAGGATGTC-ACCCGCCG TTTTGCCAAATTCGC RD1_0285 278539 - 277202 - | NreB protein, putative TERM 198 278293 - 278259 - G 72 -2.7 -4.86731 | gap 1, overlap 278261 278263 278278 GGCTGCGAAACAAAA GCCATGGGCAGCA-GC AACA GCATGCGCCCCACGTC CAGGGACACCATGGC RD1_0286 278721 - 279437 + | hypothetical protein RD1_0287 280064 - 279456 - | enoyl-CoA hydratase/isomerase family protein RD1_0288 280810 - 280061 - | dehydrogenase TERM 199 280777 - 280791 + g 78 -4.2 -4.83269 | overlap 280779 TCCCGCGACTCGCCC CCGTGA TCA TCACCG TTTTTCCTGTCATAT TERM 200 281987 - 281997 + G 78 -4.6 -4.72986 | CACCATGTCCGACAT GCTC TGG GGGC TTTTTGATCCCGGTG RD1_0289 280944 - 282452 + | hypothetical protein pmbA 282483 - 283883 + | PmbA protein, putative RD1_0291 283870 - 284664 + | inositol monophosphatase family protein TERM 201 284670 - 284701 + F 91 -3.6 -5.45802 | gap 1, overlap 284671 CGGCGCTTGACCCTG ACGGGTG-GATCGGC AAC GCTGTTCTCACTCGC TTTTTGTTTTGAGGA RD1_0292 284674 - 284967 + | hypothetical protein TERM 202 285557 - 285541 - g 79 -7.9 -4.55287 | CGGATCGACAGAAAA CCCCCCT TGC AGGCGGG TGGAAATGCGTTGGC RD1_0293 284974 - 286221 + | 3-deoxy-D-manno-octulosonic-acid TERM 203 287096 - 287084 - g 85 -6.9 -4.78149 | GTGACAACCGAAAAA GACGC CGC GCGCC TGCCGAACAGTTTCC lpxK 286208 - 287203 + | tetraacyldisaccharide 4'-kinase bdbD 287938 - 287267 - | thiol-disulfide oxidoreductase D, putative RD1_0296 288461 - 287952 - | hypothetical protein TERM 204 288953 - 288971 + G 80 -11 -3.83205 | overlap 288951 288946 ACCCTATACCGCAGC GGCGATCG CTT CGATTGCC TTTGATCTCAGGCAT mutY 288546 - 289613 + | A/G-specific adenine glycosylase, putative TERM 205 289650 - 289631 - T 100 -12.1 -5.60993 | CGTTGGACAAAAAAA CCCCGCC AACAAG GGCGGGG TCAAGGGGGGTGCCC ccrM 290821 - 289727 - | modification methylase rnhB 291510 - 290914 - | ribonuclease HII TERM 206 291646 - 291626 - RH 100 -11.8 -5.0538 | GCGGATGCGAAAAAA CGCCCCCG GCAAG CGGAGGCG CAGAACTCGTTAAAA TERM 207 291692 - 291663 - RH 87 -8.5 -4.60255 | overlap 291652 291664 AGAACTCGTTAAAAA GGAGGGAAGACGC CCGA ACGCCCTCCCTCA GGTGCAAGGCCGGTG TERM 208 291691 - 291664 - RH 80 -12 -3.3543 | overlap 291652 291663 GAACTCGTTAAAAAG GAGGGAAGACGC CCGA ACGCCCTCCCTC AGGTGCAAGGCCGGT RD1_0301 292227 - 291742 - | hypothetical protein TERM 209 291779 - 291802 + gH 77 -3.6 -4.89233 | opp_overlap 291781, overlap 291781 CCCGCGCGGCGCAGA CAGCGGGCGC CATA GCCCACGCGG TTTTTACTATTCGTG RD1_0302 292221 - 292688 + | hypothetical protein RD1_0303 292660 - 293364 + | hypothetical protein TERM 210 294125 - 294135 + G 75 -8.2 -4.1822 | AAGCGTCCTTGGATG CCGG TGC CCGG TTTGTTGCCGTGGCC bphF 293443 - 294213 + | 4-hydroxy-2-oxovalerate aldolase RD1_0305 295361 - 294210 - | hypothetical protein asd 295514 - 296536 + | aspartate-semialdehyde dehydrogenase TERM 211 296558 - 296579 + T 82 -5 -5.00616 | opp_overlap 296532 296559, overlap 296559 CAAGGCATTTGGAAA ACCGTCGG GTCACA CCGGCGGC TTTTTTGCCAACGGC RD1_0307 297165 - 296611 - | hypothetical protein glpQ 298934 - 297162 - | glycerophosphoryl diester phosphodiesterase family protein TERM 212 297506 - 297520 + g 71 -5.6 -4.36914 | opp_overlap 297488, overlap 297507 CGCTGCGCCAGTCCG GGCGCA ATC TGCGCA TTTTCTGCACGGCGG RD1_0309 299540 - 299130 - | hypothetical protein RD1_0310 299888 - 299577 - | hypothetical protein RD1_0311 300870 - 299893 - | hypothetical protein TERM 213 300343 - 300325 - G 81 -5.9 -4.7373 | CCATCCGATGAAAAA CGCGCCG ACCAG CAGCACG ATGGACCCGTTCAGC cynT 301602 - 300952 - | carbonate anhydratase TERM 214 301188 - 301209 + g 83 -4.3 -5.07486 | GCTTGAGAATATCCA TCCAGCGCC CGAT GAAGCTGGA TTTTTCTTCAAGGTC RD1_0313 301733 - 302128 + | hypothetical protein TERM 215 302163 - 302189 + F 75 -11.6 -3.43117 | ATCAGACTAGGCTGC GAGGGCGATTTT GTG AAAGGCGCCCTC TTATGACTTCCCTGT pepA 302192 - 303574 + | leucine aminopeptidase, putative RD1_0315 303571 - 304365 + | NlpC/P60 domain-containing protein RD1_0316 304725 - 304378 - | hypothetical protein RD1_0317 306456 - 304795 - | hypothetical protein TERM 216 305481 - 305497 + g 100 -9.3 -4.86033 | opp_overlap 305480 305478 305473 305481, overlap 305480 305481 305496 CCTGAAACAGAACAC GGCGCGC CCC GCGCCCC TTTTTCTCAAGGTTT RD1_0318 307157 - 306540 - | TetR family transcriptional regulator TERM 217 307358 - 307338 - H 70 -3.3 -4.83169 | gap 1 ATGTGGTCAGAAAAA TGCGCACA TCGTTC TG-GCGCA TCACGCATCAAGTGA TERM 218 307432 - 307420 - H 73 -9.1 -3.91402 | opp_overlap 307425 CCACAGAAAGGGAAA CACGC CCG GCGTG TCGGTATGATTGAAA TERM 219 307542 - 307554 + G 79 -7.7 -4.55798 | GGCGACCGCCTATCT GACGA AAT TCGTC TTTTACTTTGCGCTC RD1_0319 307438 - 308367 + | auxin efflux carrier family protein, putative fghA 308437 - 309267 + | S-formylglutathione hydrolase, putative RD1_0321 309264 - 309719 + | YaiI/YqxD family protein, putative RD1_0322 309740 - 310372 + | hydrolase, putative TERM 220 310817 - 310770 - g 75 -14.1 -2.91264 | gap 1, opp_overlap 310770 310769 310787 GGGCGCAGGCACACA GGCGCGTGCACTGCACAGCGCC TATTC GGCGCTGTTCC-CGCACGCGCA GTTTACCGTCTGGAA TERM 221 310770 - 310791 + G 72 -12.3 -3.04248 | gap 1, opp_overlap 310770, overlap 310769 310787 GGGCGCAGGCACACA GGCGC-GTGC ACT GCACAGCGCC TATTCGGCGCTGTTC RD1_0323 310369 - 311292 + | ornithine cyclodeaminase, putative TERM 222 311366 - 311396 + G 71 -6 -4.31293 | gap 1, opp_overlap 311366 311382, overlap 311369 GCGCCGCCCCATGAA CGCCGCCGCGCGC AAATCG GCCCCCGGCG-CG TTTGTTGATCTGTCG TERM 223 311688 - 311703 + G 74 -6 -4.57073 | GGCTATTCGATGGGC GGGACG ATTG CGACCC TTTTTGCGGCGGATC RD1_0324 311289 - 312212 + | alpha/beta hydrolase, putative RD1_0325 313501 - 312209 - | major facilitator transporter TERM 224 313742 - 313713 - g 81 -4.9 -5.0133 | opp_overlap 313700 313738, overlap 313714 CAGCCCGTCAAAAAA GGGCTGTTCCG CAAGGTAC CGGAACCGCCA AAGGGTGTCTATTTC RD1_0326 313515 - 314642 + | ATPase, AFG1 family protein folC 315922 - 314648 - | folC bifunctional protein accD 316863 - 315919 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit TERM 225 316532 - 316481 - G 75 -2.9 -4.90266 | gap 1, opp_overlap 316500, overlap 316500 GCCATGAAGGAAAAA TCCTGCGCGGCGGCAACAATCGGC GTGCG GCCGATT-TCCCCGCAGCCCACCA GCATCGCCTCGACCT RD1_0329 317821 - 316922 - | CAAX amino terminal protease family protein, putative RD1_0330 318001 - 317831 - | hypothetical protein TERM 226 317859 - 317882 + g 80 -15.3 -3.03159 | TTTGATGGCTGCGGG GCAGCGCGC CCTGCA GCGCGCTGC TCTTCGGCCACTTCG RD1_0331 320953 - 318011 - | ABC transporter subunit, putative TERM 227 318290 - 318266 - G 74 -11.3 -3.53444 | overlap 318227 318226 CCACTGTGCCGCAAA GGCCAGCAGCC GCT GGCTGCGCGCC TCAAGGTCAGCAAAA TERM 228 318346 - 318307 - G 81 -5.7 -4.74801 | gap 1, overlap 318309 CAAGGTCAGCAAAAA GCTCTGTG-CGCGAGATC ACCCG GATCTTGCGCCGCAGATC ATCCGAGCCCGAGGC TERM 229 319190 - 319178 - G 70 -3.3 -4.62302 | opp_overlap 319182 GAACAGCCGCAAAAA GTTGG CTT CCGAC GCGAGGCTCTCCTGC TERM 230 319526 - 319561 + g 79 -8.2 -4.47049 | gap 1, overlap 319528 CGCTTTGGTGCTGTC GGGGCTGTTGCCGGCGC GTT GCGCCT-CGATAGCCGC TTTGTCTTTGTGTTT TERM 231 320908 - 320891 - G 76 -6.3 -4.62302 | opp_overlap 320891, overlap 320902 GAATATGGTGAAAAA CAACAGA ACAA TCTGCTG TCGTCTGGAATACTT ilvD 321157 - 322920 + | dihydroxy-acid dehydratase TERM 232 323011 - 323039 + T 100 -18.2 -4.58395 | opp_overlap 323011 GGATACAACGAAAAA GCCTCACGCGGC CCGGT GCTGCGTGAGGC TTTTTCAGGGATCAG TERM 233 323039 - 323011 - T 100 -16 -4.96646 | opp_overlap 323011 GGATACAACGAAAAA GCCTCACGCGGC CCGGT GCTGCGTGAGGC TTTTTCAGGGATCAG TERM 234 323220 - 323175 - T 100 -16.1 -3.28791 | opp_overlap 323171 323185, overlap 323176 ATCTGCGCTGTATAA TGCGCCTGAACCGCCCCGCCT GAAA AGGCGGGGCAGTTCAGTGACC TATCGGTTGCTGGTG TERM 235 323219 - 323176 - T 100 -19.6 -2.57132 | opp_overlap 323171 323185, overlap 323175 TCTGCGCTGTATAAT GCGCCTGAACCGCCCCGCCT GAAA AGGCGGGGCAGTTCAGTGAC CTATCGGTTGCTGGT TERM 236 323185 - 323210 + T 93 -16.1 -3.07443 | opp_overlap 323176 323175, overlap 323171 TATAATGCGCCTGAA CCGCCCCGCCT GAAA AGGCGGGGCAG TTCAGTGACCTATCG ctpA 324560 - 323220 - | carboxyl-terminal protease family protein, putative RD1_0334 325709 - 324567 - | M23 peptidase domain-containing protein TERM 237 324960 - 324914 - G 76 -9.4 -4.07568 | overlap 324917 324937 GCCGCGTGGCCAAAA TGATGCCCGG-GCGGCGGATAC CAGCC GCATCCGCCGCGCCGGACG-CG CGCAAAAGGTGACCC TERM 238 324958 - 324917 - G 87 -16.6 -3.08032 | gap 1, overlap 324914 324937 GCGTGGCCAAAATGA TGCCCGG-GCGGCGGATAC CAGCC GCATCCGCCGCGCCGGACG CGCGCAAAAGGTGAC TERM 239 325617 - 325639 + g 78 -10.4 -3.85698 | CATTTGCACGGCCAG CCGCGCACGC TCC GCAGGCGCGG TTTGTGCGACAGCCA gpmI 327211 - 325694 - | phosphoglyceromutase dnaE 330261 - 327286 - | DNA polymerase III, alpha subunit TERM 240 330082 - 330139 + g 71 -7 -4.2558 | CGCCTGCCGCTCGCG CAC-CTGCCGGGCAATGTCACGCGCCTG CGCA TAGGCGCG-GACAATGCCTGCAACCGTG TTTTCATCCGCAATC RD1_0338 330297 - 330443 + | hypothetical protein TERM 241 331270 - 331258 - f 70 -6.9 -4.11394 | opp_overlap 331265, overlap 331266 AGCGCAGGTGTAAAA CGGCA AAA CGCCG ATAAGGCGCTACTTG TERM 242 331278 - 331266 - f 71 -6.2 -4.28049 | opp_overlap 331265, overlap 331258 TGTAAAACGGCAAAA CGCC GATAA GGCG CTACTTGGGCAATGG TERM 243 333291 - 333258 - g 74 -11 -3.54382 | opp_overlap 333263 333268, overlap 333259 333263 GCGGAACAGAATGAA CGAAAGGCCAGCGG TGGCAC CCGCCAGCCTTTCT GAATGTCACCAAACC TERM 244 333290 - 333259 - g 77 -14.5 -2.72147 | opp_overlap 333263 333268, overlap 333258 333263 CGGAACAGAATGAAC GAAAGGCCAGCGG TGGCAC CCGCCAGCCTTTC TGAATGTCACCAAAC TERM 245 333286 - 333263 - g 76 -9.5 -4.03137 | opp_overlap 333263 333268, overlap 333259 333258 ACAGAATGAACGAAA GGCCAGCGG TGGCAC CCGCCAGCC TTTCTGAATGTCACC RD1_0339 331353 - 333293 + | transposase, putative TERM 246 333436 - 333404 - gf 70 -6.7 -4.09739 | GGAACCTGCTTAAAA CGGCCGGGCTTGGCA TTG CGCGCGGCCCGGTCG GCATCGGAAAGAGCT RD1_0340 333253 - 334092 + | hypothetical protein RD1_0341 334092 - 334430 + | hypothetical protein RD1_0342 334427 - 334750 + | hypothetical protein RD1_0343 334747 - 335157 + | hypothetical protein TERM 247 335211 - 335174 - f 72 -11.9 -2.78216 | gap 1, opp_overlap 335175, overlap 335171 CAGCCTGAGCAAGGA TGCAGAGGGGCGGTGCGC GGT GCGTGCCGCCCCT-TGCT TTTGAACAGGGGCGG TERM 248 335175 - 335210 + F 100 -19.8 -4.07568 | gap 1, opp_overlap 335174 335171 AGCCTGAGCAAGGAT GCAGAGGGGCGGTGCGC GGT GCGTGCCGCCCCT-TGC TTTTGAACAGGGGCG RD1_0344 335490 - 336506 + | hypothetical protein RD1_0345 336530 - 337429 + | hypothetical protein TERM 249 337433 - 337466 + F 86 -14.6 -2.88427 | opp_overlap 337432, overlap 337435 CTGAATTCATGACAT TCGCCGGGGCTG CTGTTGGTGA CGGCCCCGGCGA TGTGTGCGGCGTGTT TERM 250 337568 - 337589 + F 76 -10.3 -3.71686 | opp_overlap 337568 CATATACATTTCAAA TAGAGGTAT TATA ATACCTCTA TTGTGTTAGATTAAG TERM 251 337589 - 337568 - f 76 -10.3 -3.66139 | opp_overlap 337568 CATATACATTTCAAA TAGAGGTAT TATA ATACCTCTA TTGTGTTAGATTAAG RD1_0346 337614 - 337979 + | hypothetical protein RD1_0348 337985 - 338479 + | phage virion morphogenesis protein, putative TERM 252 338984 - 338996 + F 74 -10.5 -3.57144 | TTCAGATGGGCTTGC CCCGC GAC GCGGG TTTGGCCATAAAGCA TERM 253 339226 - 339211 - f 78 -2.6 -5.28778 | gap 1, opp_overlap 339211 ACTACGCAGAAAAAA CATG-AG CGC CTGCATG TGTTGCACCTGTAAT TERM 254 339819 - 339807 - g 74 -6.2 -4.47707 | opp_overlap 339814 TGCGATGAAAAACAA GCGG ATCGA CCGC GATGGGGTCTTTGAG TERM 255 340584 - 340549 - g 93 -16.2 -3.63968 | CTGGAAATGCTCAAA CCCGTTCTGGAGGATG AGAG CATCCTCAAGATCGGG CAGAACATGAAATAT TERM 256 341433 - 341423 - g 74 -6.8 -4.30014 | CCGAGGAAGGCAAAA CGCT GGT AGCG CTCGACTACAGCCAG polA 339313 - 342114 + | DNA polymerase I RD1_0350 342967 - 342206 - | hypothetical protein TERM 257 342343 - 342365 + g 80 -10.5 -4.03413 | opp_overlap 342340 342337, overlap 342348 CTTCGAAATCCATCG CGCCGCTGC CGGGC GCAGCGCCG TTTGTGTCCGCCAGT TERM 258 342643 - 342616 - G 72 -11.2 -3.29144 | opp_overlap 342605 GCAGGTTTGCCACAA GCGTTTGGCGCG CTGC CGCGCCAGAGGC GACACCCGCGATGAT RD1_0352 343618 - 343043 - | hypothetical protein TERM 259 343534 - 343551 + g 85 -6.9 -4.78764 | opp_overlap 343534 343537, overlap 343537 GGTTCCACAAATGAA CAGGCGG TAAG CCGCGTG TTTTTGCTGCATTTA moxR 343688 - 344695 + | methanol dehydrogenase regulator moxR, putative RD1_0354 344692 - 345597 + | hypothetical protein TERM 260 347394 - 347417 + G 79 -9.5 -4.18018 | overlap 347406 GAACCCGCCGTCTGG CCTGCGCGC ATTCCC GTGCGCGGG TTTTCCGTGCCACCC RD1_0355 345594 - 348371 + | hypothetical protein TERM 261 348717 - 348699 - g 86 -14.6 -3.29043 | AAGTGCGGCGGATAA CCGTCACC GAT GGTGACGG CGACACGGGTACACA RD1_0356 348368 - 350410 + | hypothetical protein TERM 262 351446 - 351466 + G 75 -2.4 -4.95155 | overlap 351448 GACAAGGGTATTTTG CTGAGCGT TGATT ACGCGCTG TTTTTGTCCTCTGAC TERM 263 351728 - 351704 - g 76 -12.1 -3.28001 | overlap 351699 CAGGTTGAAAGCGAA CGGAACCGCCA GTT TGACGGTACCG GTCTGGGTCTGGCGA TERM 264 352586 - 352569 - g 83 -2.7 -5.22039 | gap 1 GCGAAATTGAAAAAA GCAC-TAG TGC CCATGTGC CGATCATCGCTTTGA RD1_0357 350567 - 352768 + | hybrid sensory histidine kinase, putative RD1_0358 353532 - 352753 - | hypothetical protein recQ 355609 - 353567 - | ATP-dependent DNA helicase RecQ TERM 265 353620 - 353610 - G 71 -6.8 -4.18762 | overlap 353611 AAGGCCGACCCAAAA CGTG CCG CACG ACGATCGCCCAGCAG TERM 266 355485 - 355474 - G 70 -3.6 -4.72188 | GCAATTGAAAACAAA GCGA TTTA CCGC CACCCGTTGGCATGA RD1_0360 356004 - 355717 - | YGGT family protein TERM 267 357057 - 357079 + G 73 -4.7 -4.68724 | overlap 357058 CGGCATTTTCGGCAT TCTCGCCGC CATCA GCGGTGCGG TTTTCTGTTGGATCG TERM 268 357105 - 357136 + G 89 -10.2 -4.53163 | gap 1, overlap 357106 GATCGGCGGGCATGC AGATCGCCG-CATCG GCC CGATGCCGGTGATCA TTTTCTGCTGTGTCA TERM 269 357106 - 357135 + G 81 -13.7 -3.31175 | gap 1, overlap 357105 ATCGGCGGGCATGCA GATCGCCG-CATCG GCC CGATGCCGGTGATC ATTTTCTGCTGTGTC RD1_0361 356161 - 357525 + | major facilitator superfamily permease TERM 270 357613 - 357589 - gf 71 -6.4 -4.15044 | gap 1, overlap 357590 CCTGTTCCGAACAAA GCGCGCCACCT GCGC AGGTCGCGC-C ATTGCCGACGATCGG mepA 357522 - 358451 + | penicillin-insensitive murein endopeptidase TERM 271 358907 - 358885 - gf 77 -4 -4.90778 | opp_overlap 358898, overlap 358886 CGCATTCAAACAAAA CGGCGGGC TTGAAGC GCTCGCCA TTCAGGACGGCGGAT RD1_0364 358424 - 359344 + | hypothetical protein TERM 272 359795 - 359815 + G 71 -5.3 -4.41633 | GCCTCTACGCTGATC GGCAGCACC GTC GATACTGCC TTATTTTTCAGCATC RD1_0365 359414 - 360034 + | hypothetical protein TERM 273 360254 - 360278 + F 100 -14.3 -4.72986 | CGCAACCATTCGATT GGGCCGCAC TGTAAAT GTGCGGCCC TTTTTGATAGGCGTG RD1_0366 360368 - 360784 + | hypothetical protein RD1_0367 360858 - 361604 + | 3'- 5' exonuclease family protein, putative kdsD 361601 - 362563 + | arabinose 5-phosphate isomerase TERM 274 363077 - 363087 + G 71 -8.2 -4.06419 | GGGATCTGCAGGCCG GCGC GAT GCGC TTCTTTGTCCCGGAG RD1_0369 362569 - 363177 + | hypothetical protein RD1_0370 363181 - 363672 + | hypothetical protein RD1_0371 363673 - 364431 + | ABC transporter, ATP-binding protein, putative RD1_0372 364678 - 365244 + | sigma-54 modulation protein, putative ptsN 365285 - 365749 + | nitrogen regulatory IIA protein TERM 275 365772 - 365741 - T 100 -20.2 -3.91357 | opp_overlap 365734 365768 GCAGAAGCAGAACAA GCCGCCTGACCGGT GAAA ACTGGTCAGGCGGC TGCAACGTCTGGTGA TERM 276 365768 - 365799 + T 73 -9.4 -3.8377 | opp_overlap 365741, overlap 365734 GTGAAAACTGGTCAG GCGGCTGCAACGTC TGGT GATGTTTCGGTCGC TTTACTGTGCGGCTT gtaB 366694 - 365801 - | UTP--glucose-1-phosphate uridylyltransferase TERM 277 365957 - 365968 + g 76 -5.8 -4.71061 | overlap 365952 AAAGCGATACCCATA GACC CCAT GGTC TTTTTCGATCTCGGT TERM 278 366612 - 366622 + g 74 -3.2 -4.73613 | overlap 366599 AGCGTCATGATTTCC TTCG GGA CGGA TTTTGTTGCTGGTAA kdsB 367708 - 366908 - | 3-deoxy-manno-octulosonate cytidylyltransferase cysQ 368508 - 367708 - | 3'(2'),5'-bisphosphate nucleotidase TERM 279 367991 - 368001 + g 71 -6.8 -4.25104 | TCATCCGTCGCCTGA TCCC GAT GGGA TTTTGATGCAACGAC alkB 369443 - 368844 - | alkylated DNA repair protein TERM 280 369288 - 369304 + g 72 -2.3 -4.86731 | ATAGGCCCCCGCCGC TGTCA TGCGCAC TGACA TTTTGTTTCCACGGG TERM 281 370048 - 370027 - g 76 -6.5 -4.56883 | overlap 370028 GCAAGATGAAAGAAA CCGCCGAGA GCTA TCTTGGCGA AGACGTCACGCAAGC TERM 282 371478 - 371468 - g 78 -6.8 -4.71426 | overlap 371469 371471 CTCTCAGGAAGAAAA CGAC GAC GTCG CCGAACCTGCCGACG dnaK 369654 - 371564 + | chaperone protein DnaK, putative TERM 283 371587 - 371621 + F 91 -15.1 -3.1247 | opp_overlap 371577 371592 CGAAACCCGGAACCA C-TGAACGGGCCGGCCT TAC GGGCCGGCCCGT-CACG TTCCATCTAGGGGAT TERM 284 371616 - 371592 - f 100 -20 -3.13164 | opp_overlap 371587, overlap 371577 CCCGGAACCACTGAA CGGGCCGGCC TTACG GGCCGGCCCG TCACGTTCCATCTAG TERM 285 371721 - 371711 - g 85 -2.4 -5.39721 | CGATGACATAAAAAA GGGG TAT CGCC GCAAAGCCAAAGAGC TERM 286 371894 - 371908 + G 71 -8.5 -4.08216 | CGGCGGCGGTGGCGG CCGCC CCGGT GGCGG TTTTGGCGGCGGTCA dnaJ 371643 - 372797 + | chaperone protein DnaJ RD1_0380 373020 - 372925 - | hypothetical protein secA 375768 - 373054 - | preprotein translocase subunit SecA TERM 287 373175 - 373197 + g 89 -16.2 -3.31263 | GCTACAGCTGCGTCC GCCGGCCCGG CAA CCGGTCCGGC TTGTGCGGATACGGT TERM 288 375640 - 375651 + g 73 -4.4 -4.59773 | CTTTTCCTTGAGCCC CTCA TCGC TGAG TTTTTCGAACTCAGG RD1_0383 375943 - 376800 + | peptidyl-prolyl cis-trans isomerase domain-containing protein TERM 289 377036 - 377022 - g 71 -7.1 -4.26076 | TGACTGCCAGGAAAA GCTGG GAGGG CCAGC GAAGGACGGCGCGGC argJ 376807 - 378033 + | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein mutT 378052 - 378450 + | mutator mutT protein, putative TERM 290 378729 - 378766 + T 100 -13.6 -4.13767 | opp_overlap 378731 378737, overlap 378731 378737 AGGGTAAGGAATAGA AACGAAAAGAGGCAGC ATCATC GCTGCCTCTTTTTGTA TTTTGCCATCGACAG TERM 291 378764 - 378731 - T 100 -14.7 -4.2772 | opp_overlap 378729 378731 378737, overlap 378737 GGTAAGGAATAGAAA CGAAAAGAGGCAGCA TCAT CGCTGCCTCTTTTTG TATTTTGCCATCGAC TERM 292 378731 - 378764 + T 100 -16.2 -3.6692 | opp_overlap 378731 378737, overlap 378729 378737 GGTAAGGAATAGAAA CGAAAAGAGGCAGC ATCATC GCTGCCTCTTTTTG TATTTTGCCATCGAC TERM 293 378758 - 378737 - T 100 -12.3 -4.67563 | opp_overlap 378731 378729 378737, overlap 378731 GAATAGAAACGAAAA GAGGCAGCA TCAT CGCTGCCTC TTTTTGTATTTTGCC TERM 294 378737 - 378758 + T 100 -11.6 -5.28983 | opp_overlap 378737 378731, overlap 378731 378729 GAATAGAAACGAAAA GAGGCAGC ATCATC GCTGCCTC TTTTTGTATTTTGCC infB 381258 - 378784 - | translation initiation factor IF-2 TERM 295 381278 - 381295 + r 79 -11.3 -3.63744 | overlap 381276 CTCGTCTATCCTTTC GGATGGC CCCT GCCATCC TCTTTTACGCGCACG RD1_0387 381888 - 381268 - | hypothetical protein TERM 296 381785 - 381758 - G 81 -13.4 -3.39556 | overlap 381756 AATTTGCCAAGAATA TCGGGCACGACA TCCC CGTCGGGCCCGA CCACGAAACGTACCA TERM 297 381898 - 381921 + r 71 -12.4 -2.50994 | overlap 381897 ACCCATCAGGTGCCA CCGAGGCCTG AGAT CAGACCTCGG CTTCCTCCGCTTCAG nusA 383527 - 381911 - | transcription elongation factor NusA RD1_0389 384117 - 383527 - | hypothetical protein TERM 298 384164 - 384150 - R 100 -8.5 -5.71983 | TCAAGCACAAAAAAA CGGGC GCAGG GCCCG TTCAAAATTCCGGTT RD1_0390 385154 - 384261 - | ABC transporter, substrate-binding protein pip 386092 - 385151 - | proline iminopeptidase ubiG 386171 - 386917 + | 3-demethylubiquinone-9 3-methyltransferase RD1_0393 387459 - 387016 - | MarR family transcriptional regulator TERM 299 387508 - 387477 - R 70 -6.6 -4.21462 | gap 1 ATGGACCATCGAAAA GGCGCGCATTCGCAA GGC TTG-GAATTCTCGCC CGCGCTGACCCTACT RD1_0395 388290 - 387460 - | carbon-nitrogen family hydrolase putative grxC 388547 - 388290 - | glutaredoxin 3 comF 389318 - 388587 - | competence protein F, putative TERM 300 389951 - 389933 - g 75 -8 -4.15222 | opp_overlap 389936 389936 389937, overlap 389919 389934 ACGCGCTGGAACAAA GGCGGCGC GTG ACCCCGCC GCGCGCACTTTTTGA TERM 301 389936 - 389959 + G 76 -6.6 -4.57569 | gap 1, opp_overlap 389919 389933 389934, overlap 389936 389937 CGCTGGAACAAAGGC G-GCGCGTGAC CCC GCCGCGCGCAC TTTTTGAACGGATGG TERM 302 390088 - 390078 - g 73 -4.6 -4.70169 | CGACACGCAACAAAA GCCG CTT CGAC CTGGTTCTGCAAAAC TERM 303 390144 - 390103 - g 80 -10.1 -4.07568 | gap 1, opp_overlap 390106, overlap 390106 CCTGGTTCTGCAAAA CAACGGCT-CGCGGATGCCC TGC GTGTACCCGAGCAGCCGTTG CGTGATTGACCCGAG RD1_0400 389437 - 390153 + | hypothetical protein TERM 304 390319 - 390287 - g 71 -7 -4.14392 | CCGGAAGTCGCAAAA CCCAAGGTCGGC ATTCTGTTG GCAAACCTTGGG ACGCCGGACAATTAT hemH 390239 - 391282 + | ferrochelatase TERM 305 391308 - 391333 + T 93 -8.9 -4.8269 | opp_overlap 391310, overlap 391310 CCCGGAAAATAAAAA AAGGCGGCGCT GAAA AGCACCGCCTC TTTTTAATGCTTGTA TERM 306 391331 - 391310 - T 100 -13.7 -6.09196 | opp_overlap 391308 391310 CGGAAAATAAAAAAA GGCGGCGCT GAAA AGCACCGCC TCTTTTTAATGCTTG TERM 307 391310 - 391331 + T 85 -11.5 -4.02049 | opp_overlap 391310, overlap 391308 CGGAAAATAAAAAAA GGCGGCGCT GAAA AGCACCGCC TCTTTTTAATGCTTG RD1_0402 392284 - 391673 - | ErfK/YbiS/YcfS/YnhG family protein TERM 308 392247 - 392261 + g 78 -7 -4.69622 | opp_overlap 392246, overlap 392248 CCGCCCGCGAGGAAC GCCCGG CGT CCGGGG TTTTTGAAGTTCTGT TERM 309 392979 - 392961 - g 70 -10.2 -3.54424 | GCTGATTCTCGGAAA GGCATCCG GTG CGGGTGCC GGTCTGGGCAGCTGA RD1_0403 392449 - 392994 + | SCP-like extracellular protein, putative RD1_0404 393460 - 392999 - | ErfK/YbiS/YcfS/YnhG family protein ccaA 394365 - 393586 - | voltage-gated sodium channel subunit RD1_0406 395611 - 394385 - | RNA methyltransferase, putative TERM 310 394916 - 394898 - G 84 -8.8 -4.56597 | GGTCGCCTGCAAAAA CGCGCC GGGCGGT GGCGCG ACATCTATGCCGTCA TERM 311 395021 - 395047 + g 78 -7.3 -4.67038 | gap 1, opp_overlap 394996 ACAGATCGCCGCAAG CCGCTGG-CG CAGTGGCC CGTCCAGCGG TTTTCCTTTTGACGC RD1_0407 397482 - 395650 - | ABC transporter, transmembrane ATP-binding protein TERM 312 396308 - 396273 - G 85 -7.4 -4.7268 | opp_overlap 396275 396276 396305, overlap 396261 AAAGACGCAACAAAA GCGCCACCAGCGTGGA TTTA CCCACACCGGATGCAC CGACGATGCCTATTT TERM 313 397108 - 397096 - G 80 -3.3 -5.03314 | GTCATTGTCAAAAAA CCCGA CCG TCTGG CCCAACGTCCACCGA RD1_0408 399317 - 397479 - | ABC transporter, transmembrane ATP-binding protein TERM 314 399038 - 399014 - G 70 -10.7 -3.52073 | TGTTCAACACCAGAA CGTCCAGCG CCTGTAT CGCCGGACG AAGAAACAGGATGAA RD1_0409 400666 - 399488 - | polyA polymerase family protein, putative TERM 315 399936 - 399920 - G 73 -4.4 -4.59511 | gap 1 AACAGGTGCCAAAAA CCGGTCA TCGC TG-CCGG GCAAAACCCGTGCCA TERM 316 400300 - 400270 - G 73 -9.7 -3.87373 | gap 1, opp_overlap 400269 CAGATGCTGCATAAA GCGCGTTCATCGTG AAAT CGCGACG-ACGCGC GTCTTCCCGGATATC TERM 317 400541 - 400531 - G 75 -8.2 -4.14392 | overlap 400532 TCGCAATCCCCAAAA GCGC GTC GCGC ACACAGCCGCCCACG TERM 318 400595 - 400564 - G 79 -7.9 -4.49556 | gap 1, overlap 400565 400566 CGCCCACGAAATAAA CCGCGCCGCCC-GC ACACG ACAGGGCGTCGCAG ACAGCCAGCGCATCC RD1_0410 401235 - 400645 - | hydrolase, putative hslO 402259 - 401228 - | chaperonin, 33 kDa, putative RD1_0412 402299 - 402748 + | hypothetical protein RD1_0413 403935 - 402724 - | response regulator TERM 319 403436 - 403419 - G 75 -7.7 -4.26903 | TGGACCTGAGCAAAA GGGACAA ATGG CTGTCCC CGATTTGCTTGAACC RD1_0414 404158 - 404490 + | Hpt domain-containing protein RD1_0415 405278 - 404487 - | putative dehydrogenase ilvA 406519 - 405287 - | threonine dehydratase TERM 320 406108 - 406089 - G 70 -5 -4.55721 | AAAGGCGACAGAAAA TGCGCA TGCGCCTC TGCGCA AAATGCCTGCGCCTG TERM 321 406831 - 406865 + G 81 -13.6 -3.41302 | opp_overlap 406837, overlap 406836 CTCCGACATCTATAT CGAAGACGTGCGCGAA GAA TTCGTGCGCGATTTCG TCTTTCCGATGTTCC TERM 322 406836 - 406860 + G 71 -8.5 -4.00934 | opp_overlap 406837, overlap 406831 ACATCTATATCGAAG ACGTGCGCGAA GAA TTCGTGCGCGA TTTCGTCTTTCCGAT argG 406646 - 407866 + | argininosuccinate synthase TERM 323 407939 - 407883 - T 89 -9 -4.63527 | gap 2, opp_overlap 407883 407886 407900, overlap 407884 GCATCATGCGAAAAA CGTGGATCACGTAACGCTGCCTGAAATC AAG GATTTCA-AC-GCATTACGTGATACTCA TTGTTTCAGTCGTTT TERM 324 407938 - 407884 - T 73 -10.3 -3.37634 | gap 2, opp_overlap 407883 407886 407900, overlap 407883 CATCATGCGAAAAAC GTGGATCACGTAACGCTGCCTGAAATC AAG GATTTCA-AC-GCATTACGTGATACTC ATTGTTTCAGTCGTT TERM 325 407973 - 407988 + T 73 -6 -4.4891 | overlap 407974 CAGACGCCACTATCC AGCGCG GCGG CGCGCA TTTTCTCATAATGCG RD1_0418 408661 - 407957 - | hypothetical protein TERM 326 408300 - 408288 - G 70 -4.1 -4.63218 | overlap 408269 408289 408290 CTTTGCTGAACAAAA CCGAT CTG ATCGA GGGTCAGGTCATCCC TERM 327 408754 - 408742 - H 71 -4.7 -4.652 | overlap 408730 408743 AAAGCACCGTAAAAA TGCCG GTG CGGCG CTTCAAGATGTAAAC msrA-1 408854 - 409516 + | methionine-S-sulfoxide reductase, putative rbsK 410385 - 409513 - | ribokinase, putative TERM 328 409937 - 409906 - G 71 -9.4 -3.72695 | gap 1, opp_overlap 409905 409906, overlap 409907 AGCCGCCGCATCAAA CGGGGCTGCGGCGTA GAT CAC-CCGCAGGCCCA ATTTTCGCGCTGTCG TERM 329 410328 - 410294 - G 74 -5.7 -4.56775 | gap 2 AGGCCTTGGGAAAAA CCGGTCGCGGCCAGCGT CTC AC-CCGGGC-CGACCAG ATGCGGTACGCGATA tme 412640 - 410385 - | malic enzyme TERM 330 411512 - 411528 + g 70 -3.5 -4.62069 | opp_overlap 411511 TCGGAATGATGTAAT CCCGCCC GAA GGACAGG TTTTTGCCATAGGCC TERM 331 412619 - 412629 + g 90 -4.6 -5.31275 | CGAGCGCCTCTTCTG CCGT AAC GCGG TTTTTTGTCATCGAA TERM 332 413531 - 413519 - g 79 -9.1 -4.22652 | opp_overlap 413518, overlap 413512 CGACATCACGCAAAA GGGCA AAC TGCCC CTGTTGCGCCCGCCT TERM 333 414195 - 414182 - g 78 -6.7 -4.6951 | opp_overlap 414182, overlap 414185 ATCACTGAAAATAAA GCACA ACAA TGTGC TGGGCTATTTCATCG TERM 334 414390 - 414374 - g 82 -8.7 -4.35524 | GCTGGAAATCGAAAA GCGTCTC TAT GAAACGC TGAAATCGGATATTC TERM 335 414730 - 414685 - g 70 -10.5 -3.51232 | gap 1, opp_overlap 414682, overlap 414681 TGGCGGGTAAATCAA CCTATCTGCGCCAG-AACGCGA TCA TTGCGCTGCTGGCACAAATGGG CAGTTTCGTGCCTGC mutS 412776 - 415412 + | DNA mismatch repair protein TERM 336 415419 - 415395 - T 100 -14.3 -3.78329 | CTTTATCAATTGAAA GAGGCGGCCAA TCC CTGACCGCCTC ACACAAAAAGATCGC grpE 416004 - 415441 - | GrpE protein HSP-70 cofactor, putative TERM 337 415671 - 415693 + g 81 -7.7 -4.64676 | CACGCATGGTCAGTT CGATGCCTT CGAGC AAGGCAGCG TTTTGTTCCCGCTGC hrcA 417048 - 416014 - | heat-inducible transcription repressor rph 417192 - 417905 + | ribonuclease PH TERM 338 417901 - 417891 - f 87 -8.2 -4.56597 | GTCGCCGCGCAAAAA GCGG CCA CCGC ATGACACGCAAGTTC RD1_0427 417902 - 418513 + | putative deoxyribonucleotide triphosphate pyrophosphatase hemN 418506 - 419663 + | coproporphyrinogen III oxidase parB 420556 - 419660 - | chromosome partitioning protein parB parA 421375 - 420566 - | chromosome partitioning protein ParA TERM 339 420902 - 420890 - G 80 -4.1 -5.09426 | CTCAAGCGCAAAAAA TTCGC TTT GCAAA GGCACCAGAACCGAA gidB 421967 - 421368 - | methyltransferase GidB gidA 423850 - 421979 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA trmE 425141 - 423855 - | tRNA modification GTPase TrmE TERM 340 423992 - 423978 - G 74 -5.6 -4.50976 | GGTTATATCATAAAA CTCCGG ACC CCTGAG AAGAGCTTCAAATGA rho 426439 - 425171 - | transcription termination factor Rho RD1_0435 427044 - 426595 - | hypothetical protein RD1_0436 427268 - 427366 + | hypothetical protein TERM 341 427586 - 427558 - g 80 -11 -3.76534 | TGAAGAAATGGTAAA GGAAGCCCTGCT GGCAG AGCAGGCCTCCC CCAGAGACATCGCCG maf 427445 - 428044 + | septum formation protein, putative TERM 342 428205 - 428217 + G 73 -9.1 -3.9279 | TGTCTTGCGCACTTT GCCCA AAA TGGGC TTTGTCGGATTGAAT aroE 428041 - 428874 + | shikimate 5-dehydrogenase coaE 428871 - 429464 + | dephospho-CoA kinase, putative TERM 343 430025 - 430003 - g 76 -6.2 -4.59511 | AACATTCCGCAAAAA TCCGCAGGTG ATA CATCTGTGGA CTGGACGCCCCGACC dnaQ 429457 - 430143 + | DNA polymerase III, epsilon subunit secB 430646 - 430146 - | preprotein translocase subunit SecB TERM 344 430511 - 430529 + g 78 -4.5 -4.86001 | gap 1, overlap 430511 CCTGCACGTCAGGCT GG-GCGTC CGAC GGCGCTCC TTTTTGTGCCATGAT TERM 345 430596 - 430583 - G 71 -9.5 -3.75105 | opp_overlap 430580 430563 TGAACTGACCAAGAA CCCGC ATCT GCGGG GCCTGTTGTTGTCCG fxsA 431191 - 430700 - | FxsA protein, putative TERM 346 430957 - 430931 - G 80 -3.7 -5.03314 | gap 1 TGTATCTGTAAAAAA TCCAG-GCGTCA GCAA CAACGCGCCGGA AAACAGAATCATCGC TERM 347 431332 - 431346 + G 80 -3.4 -5.0925 | overlap 431334 CAGCTTCTGGTTCTG GCCGGC ATC GCTGTC TTTTTGATTTTCCGC RD1_0444 431296 - 431958 + | hypothetical protein TERM 348 431989 - 432014 + F 100 -13.3 -4.27316 | gap 1, overlap 432010 432013 CTGCGCGGATCAGTG CCGGACCCTGCT CAT GGC-GGGTCCGG TTTTGCGTTCAAAAG RD1_0446 432097 - 432687 + | Smr domain-containing protein RD1_0447 433901 - 432684 - | transmembrane transport protein, putative TERM 349 433640 - 433599 - G 72 -2.2 -4.7871 | gap 2 AATGACCAGCAAAAA CCCGCTC-GGCACA-AAGGC CATC GCCATGCAGGCCAGAGCGAG CAAGACCATCACTCC hslU 435247 - 433940 - | ATP-dependent protease ATP-binding subunit RD1_0449 436451 - 435339 - | hypothetical protein hslV 436960 - 436403 - | ATP-dependent protease peptidase subunit TERM 350 437029 - 437051 + r 73 -9 -3.8046 | opp_overlap 437018 437031, overlap 437031 437035 ACAAGGGCAACAAAA AAGGCGCCCG AGA CGGACGCCTG TTTCGGGTTTTTCGC TERM 351 437049 - 437031 - R 100 -13.8 -5.4756 | opp_overlap 437031 437029 437035, overlap 437018 AAGGGCAACAAAAAA GGCGCCCG AGA CGGACGCC TGTTTCGGGTTTTTC TERM 352 437031 - 437049 + r 77 -11.6 -3.47713 | opp_overlap 437018 437031, overlap 437029 437035 AAGGGCAACAAAAAA GGCGCCCG AGA CGGACGCC TGTTTCGGGTTTTTC TERM 353 437035 - 437058 + r 95 -11 -4.66163 | opp_overlap 437018 437031, overlap 437031 437029 GCAACAAAAAAGGCG CCCGAGACGG ACGC CTGTTTCGGG TTTTTCGCTGCGGAT trxA 437393 - 437073 - | thioredoxin RD1_0452 440808 - 437431 - | ATP-dependent DNA nuclease, putative TERM 354 439094 - 439067 - G 79 -7.7 -4.49311 | gap 1, opp_overlap 439067 ACGAGGATCAGAAAA TCACCGGCCTGC ACCGG GC-GGCGGGTGA TTTTACCATCAGAAC TERM 355 439067 - 439094 + g 71 -7.7 -4.13767 | gap 1, opp_overlap 439067 ACGAGGATCAGAAAA TCACCGGCCTGC ACCGG GC-GGCGGGTGA TTTTACCATCAGAAC TERM 356 439843 - 439859 + g 70 -10.8 -3.53012 | opp_overlap 439837, overlap 439842 CGCCAGCAATCCGAC CCGCGC ATCGC GCGCGG TTTCGACCCGGCACA RD1_0453 443762 - 440805 - | hypothetical protein TERM 357 443422 - 443433 + g 74 -7.2 -4.3129 | overlap 443415 TAGAGCGATGCGCGC GGGG CGAG CCCC TTTTGCTGCTCAATC RD1_0454 444438 - 443755 - | nucleotidyltransferase family protein, putative RD1_0455 445442 - 444423 - | hypothetical protein TERM 358 445199 - 445189 - G 73 -4.6 -4.70583 | TCGATCAAGAGAAAA CCCG CGT CGGA ATCTTCATGCATAAT RD1_0456 445915 - 445439 - | hypothetical protein RD1_0457 447444 - 445966 - | hypothetical protein TERM 359 446323 - 446307 - G 85 -12.3 -3.73042 | overlap 446305 CGGTTGATGAAAAGA CGACGAG CGC CTCGTCG AAGGTATCCATCAGG TERM 360 447066 - 447085 + g 76 -6.4 -4.56597 | TGGCCCGGCGCAGAT CTTCCAGT TCGT GCTGGAGG TTTTTGAAGCGCAGC senC 449092 - 449715 + | SenC protein regA 449812 - 450366 + | photosynthetic apparatus regulatory protein RD1_0463 451067 - 450480 - | hypothetical protein rfaI 452053 - 451064 - | lipopolysaccharide 1,3-galactosyltransferase, putative TERM 361 452579 - 452593 + G 76 -9.2 -4.11216 | CGGCGGCCATCGCGG CGGGCG GGA CGCCTG TTTTCGCGATCAAGG ahcY 452305 - 453693 + | S-adenosyl-L-homocysteine hydrolase TERM 362 453715 - 453701 - f 72 -3.5 -4.7497 | overlap 453684 GGTACTGATTAAAAA CCGGT ATGCG ACCAG ATCGGGCGACGCTGT RD1_0466 453868 - 454233 + | hypothetical protein TERM 363 454257 - 454284 + T 100 -12.2 -5.25803 | gap 1, overlap 454260 CATGTCGGAGCACGT G-AACGCCTCTTT GTT AAAGAGGCGTTTC TTTTTTATACAGCTT TERM 364 454260 - 454280 + T 100 -14.1 -5.13354 | overlap 454257 GTCGGAGCACGTGAA CGCCTCTTT GTT AAAGAGGCG TTTCTTTTTTATACA TERM 365 454444 - 454420 - T 74 -10.8 -3.61517 | gap 1, opp_overlap 454420 ACGTGGGGTGAAGAA GGGTTCTG-GC TTAT GCGCAGAACCC TTTTTTCGGTTGATG TERM 366 454420 - 454444 + T 100 -10.8 -5.17576 | gap 1, opp_overlap 454420 ACGTGGGGTGAAGAA GGGTTCTG-GC TTAT GCGCAGAACCC TTTTTTCGGTTGATG RD1_0467 455132 - 454710 - | hypothetical protein RD1_0468 455404 - 455132 - | YCII-related domain-containing protein gpsA 456368 - 455406 - | glycerol-3-phosphate dehydrogenase, putative gcp 457462 - 456365 - | O-sialoglycoprotein endopeptidase, putative TERM 367 456658 - 456672 + g 73 -4.9 -4.61482 | AAAGCTGTTGATATT GCTGC ATCGC GCGGC TTGTTTTTTCCGCCA TERM 368 456901 - 456938 + g 72 -11.9 -3.30159 | gap 1, opp_overlap 456900, overlap 456904 ACCGTTCCACTGAAG GGCCACCCGGTTGC-GGC AAG GCCAGCAGCCGGGCGATC TTGTCAAAGGCTTCC TERM 369 456904 - 456935 + g 76 -14.4 -2.52742 | gap 1, opp_overlap 456900, overlap 456901 GTTCCACTGAAGGGC CACCCGGTTGC-GGC AAG GCCAGCAGCCGGGCG ATCTTGTCAAAGGCT hemD 457543 - 458247 + | uroporphyrinogen-III synthase, putative RD1_0472 458308 - 459795 + | hypothetical protein TERM 370 460872 - 460894 + G 72 -13.4 -2.62184 | overlap 460871 460877 GCCAACGAGGACTTC CCCGAGGCGC GGC GTGCCTTGGG TGATCTGGCCGAAAC TERM 371 461209 - 461193 - g 93 -7.9 -5.06414 | overlap 461204 GCTTTGGAAGAAAAA CCCGACG AAA CCTCGGG CGACATCATCGAAGA RD1_0473 459807 - 461285 + | hypothetical protein RD1_0474 462164 - 461337 - | hypothetical protein TERM 372 462096 - 462108 + g 73 -9.1 -3.88291 | GAAGTGGCCGCGCCC CTCGC TGT GCGAG TTTATGACGCTGCTG TERM 373 462255 - 462236 - H 70 -5.6 -4.52589 | opp_overlap 462239, overlap 462239 462246 GTTTGTTATACAAAA CATGCGCA AACA CGCGCTTG TTCGAACACGCGGAT RD1_0475 462237 - 463301 + | beta-carotene ketolase, putative TERM 374 464138 - 464117 - g 81 -4.4 -4.87665 | gap 1 GTTTATCGACAAAAA GCCGATGCC GGACT GG-ACCGGC GAATAGGCCTCAAAC RD1_0476 463338 - 464144 + | enoyl-CoA hydratase/isomerase family protein RD1_0477 465290 - 464214 - | hypothetical protein TERM 375 464792 - 464778 - G 71 -5.6 -4.32857 | opp_overlap 464778, overlap 464772 CTGTTGAAAGACAAA GCCGTT GTC ATCGGC ACTGGCTTCCTTGTT RD1_0478 465491 - 466639 + | hypothetical protein RD1_0479 470086 - 466790 - | calcium binding hemolysin, putative TERM 376 470158 - 470183 + r 80 -9.1 -4.07687 | gap 1, overlap 470159 470162 TTTGTTTTATGGATG C-GAGTTCCCGT AAT ACGGGAATTCTG TTTTGGCAAACCCAT TERM 377 470159 - 470181 + r 86 -12.8 -3.63744 | overlap 470158 470162 TTGTTTTATGGATGC GAGTTCCCGT AAT ACGGGAATTC TGTTTTGGCAAACCC TERM 378 470162 - 470178 + r 83 -10.9 -3.95435 | overlap 470159 470158 TTTTATGGATGCGAG TTCCCGT AAT ACGGGAA TTCTGTTTTGGCAAA RD1_0481 471020 - 470358 - | hypothetical protein RD1_0482 471460 - 471056 - | hypothetical protein RD1_0483 472846 - 471677 - | hypothetical protein TERM 379 472509 - 472522 + g 72 -2.3 -4.7254 | overlap 472505 AAGTGATCCGCCGCA GTCCC TTTT GCGAC TTTTTCATCCGCAAT iolB 473674 - 472862 - | myo-inositol catabolism protein IolB, putative TERM 380 473485 - 473475 - G 75 -8.2 -4.26903 | opp_overlap 473480 473481 CCCATTTCACCAAAA GCGG ACC CCGC GACAGAGAGGCGGGC RD1_0486 474465 - 473671 - | sugar ABC transporter, ATP-binding protein, putative RD1_0487 475567 - 474467 - | sugar ABC transporter, permease protein TERM 381 475481 - 475457 - G 72 -2.7 -4.81083 | overlap 475459 475472 CGTAATCAGGAAAAA CACCGTGACCA GAA TGACCCCGGCA ATCGCACCGAGTTCG TERM 382 475618 - 475597 - R 100 -14.4 -4.69027 | opp_overlap 475596 AAACCTATGGAAAAA GCGGGGCC TCGATG GGCCCCGC CTCAGTTGCGTTCAG RD1_0488 476556 - 475630 - | putative sugar ABC transporter, periplasmic sugar-binding protein TERM 383 476246 - 476256 + g 81 -8.2 -4.65895 | opp_overlap 476235 ATCACGGCGATCCCC GCCG CAA CGGC TTTTTCGATCGAGGG TERM 384 476467 - 476449 - G 71 -5.3 -4.32049 | gap 1, overlap 476451 GACAACGGACCAAAA CGGATCAG AGGC CTGA-CCG TGGCTGACGACGATG RD1_0490 476714 - 477712 + | LacI family transcription regulator RD1_0491 477955 - 478242 + | hypothetical protein TERM 385 478351 - 478363 + T 73 -5.5 -4.55209 | GACGCTTTGAAACCT TGGCG GTG TGCCA TTTGTTTCATGTATC RD1_0492 479048 - 478389 - | ErfK/YbiS/YcfS/YnhG family protein RD1_0493 479681 - 479172 - | hypothetical protein RD1_0494 480766 - 479855 - | hypothetical protein TERM 386 480050 - 480072 + g 83 -15.6 -3.02739 | overlap 480055 ACTGTGACCGAGCCC CGCAATCCGG AAG CCGGGTTGCG TATCTATGGGTTCAA TERM 387 480751 - 480777 + g 72 -2.2 -4.79451 | opp_overlap 480754, overlap 480754 ACAGAACCGTTGAAC CCAGAAGCGAAA GCA TGTCCCTTCTAG TTTTCTGTTTCACCT RD1_0495 481628 - 480774 - | hypothetical protein TERM 388 481422 - 481403 - G 71 -5.7 -4.36914 | gap 1, overlap 481404 CCTCGTTTGACAAAA TCG-CGCG CACAT CGCGTCGA TGCACTCCGGTCAAA TERM 389 481735 - 481724 - H 73 -5.8 -4.43864 | AAATACACACGAAAA GCTG AAAG CAGC GGGAATGAAAGGAAA RD1_0496 481757 - 482263 + | hypothetical protein TERM 390 482271 - 482295 + T 71 -7.2 -3.93583 | overlap 482261 CAAGCTGACGACAGC GTCATGCC TTAGACATC GGCATGAC TTTGTGCGTGCGTTG TERM 391 482364 - 482390 + T 100 -8.7 -5.32944 | overlap 482365 TAATCACCCTTGTTT GCCGAAGCTTC CTTGC GGAGCTTCGGA TTTTTTCATTGTGCG TERM 392 482365 - 482389 + T 86 -12.2 -3.78682 | overlap 482364 AATCACCCTTGTTTG CCGAAGCTTC CTTGC GGAGCTTCGG ATTTTTTCATTGTGC TERM 393 482713 - 482744 + T 73 -8.8 -3.79747 | gap 1 CTTTGATTTTAGGCA GCGTCACGTGATCGA GGT TC-ATCGCATGACGC TTTAGTGATCGGTGG RD1_0497 483201 - 482746 - | hypothetical protein TERM 394 483607 - 483619 + G 74 -6.2 -4.57503 | CGGGCGTCGTTTCTG GGGG ATGGA CCCC TTTGTTGTTCTGTTC RD1_0498 483527 - 485047 + | hypothetical protein RD1_0499 485819 - 485058 - | hypothetical protein RD1_0500 486154 - 486681 + | hypothetical protein TERM 395 487670 - 487685 + GT 81 -8.2 -4.27467 | overlap 487664 CTTGTCGCGCGGGGT CCCGGT TGCT GCCGGG TTTGTGTTGGTGTTC TERM 396 487929 - 487946 + GT 71 -5.5 -4.29106 | opp_overlap 487929 487931, overlap 487925 ATGGAACCCATCGAA CAGGACC TTGT GGTGCTG TTTGTTGATCTGACC RD1_0501 486633 - 488504 + | putative cyclase RD1_0502 489358 - 488501 - | hypothetical protein TERM 397 489179 - 489125 - G 70 -4.7 -4.56775 | overlap 489139 AGGCCCGGTCAAAAA CGGTGAGCGACACAGCCCCGCCA CCTCCAGCC CGGCGGCGCGGACGCGATCACCG ATCTGCTGCGCGGAT RD1_0503 490521 - 489358 - | hypothetical protein RD1_0504 491285 - 490518 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 398 490950 - 490932 - G 76 -8.9 -4.04206 | overlap 490935 GCATTGGGACAGAAA GAACACC GCTTT GGTGTTC ACGGCCATGCAGCGA mmgC 492427 - 491282 - | acyl-CoA dehydrogenase RD1_0506 492572 - 493588 + | oxidoreductase, putative TERM 399 493836 - 493809 - g 85 -9.2 -4.67353 | overlap 493813 493814 TGATGGATTGAAAAA CAACGCGCCA GCCCGTTT TGACGCGTTG GCCTCACTGGGCTGG TERM 400 493936 - 493921 - g 70 -3.2 -4.58395 | GTGATCCGCGAAAAA CGCCTG ACCG CAAACG GAAAGCGCGGCATCA RD1_0507 493585 - 494031 + | MaoC-like protein, putative RD1_0508 494452 - 494141 - | hypothetical protein RD1_0509 495220 - 494465 - | putative enoyl-CoA hydratase/isomerase family protein pct 496800 - 495217 - | propionate CoA-transferase TERM 401 495630 - 495605 - G 82 -8.9 -4.4017 | gap 1 GTAATGTCCACAAAA CCGC-CCGCCCC TGC AGTGCGGTGCGG CACGGCGGACAAGCG TERM 402 497615 - 497598 - g 70 -4.1 -4.58395 | TGGATCCTGCAAAAA GGTGTCA GCAT CAACACC ATGTCCACCAAACCC dkgB 496950 - 497768 + | 2,5-diketo-D-gluconic acid reductase B, putative betA 499392 - 497788 - | choline dehydrogenase RD1_0513 500140 - 499571 - | hypothetical protein gutB 501184 - 500156 - | sorbitol dehydrogenase, putative RD1_0515 501353 - 502024 + | TetR family transcriptional regulator RD1_0516 502146 - 502021 - | hypothetical protein TERM 403 502162 - 502139 - G 85 -3 -5.42862 | opp_overlap 502146 AGAGCGCGAAAAAAA CCAATCACCG CAAG CGGTTTTCGG TCTTCGGATCGAAAA RD1_0517 503246 - 502143 - | sugar ABC transporter, ATP-binding protein, putative TERM 404 502191 - 502178 - G 71 -6.7 -4.18018 | opp_overlap 502177 TCTTCGGATCGAAAA GGACA GCCT TGTCC ATATTCAGCGCCAGT TERM 405 502311 - 502353 + g 72 -2.7 -4.82901 | gap 2, opp_overlap 502322 502340 TGATCCGGCGGGCTC GGTCACATCAATGCGGTTCCG GGC CAGAACCACATTGC-G-GGCC TTTTTGTCAGCGCCG RD1_0518 504131 - 503250 - | sugar ABC transporter, permease protein, putative TERM 406 503341 - 503312 - G 74 -7.1 -4.34263 | gap 1 CGGCAACAACATAAA CGACCAGCGTCGGC AGG GCCGCCA-TGATCG CACCGGCAAAATGCA RD1_0519 505024 - 504131 - | sugar ABC transporter, permease protein, putative TERM 407 505071 - 505044 - R 100 -15.6 -3.53012 | TCCCCCGTTGGCAAA GGCCTGACCCCC GTGC AGGGATCAGGCC CCTTAGAGTTACTGC RD1_0521 506330 - 505080 - | putative sugar ABC transporter, periplasmic sugar-binding protein TERM 408 506298 - 506312 + g 76 -5.6 -4.71401 | overlap 506301 CATAAGGCATGTGCT GGCGAT CAA AGCGCC TTTTATCATTTTCTT RD1_0522 508424 - 506487 - | hypothetical protein TERM 409 508131 - 508145 + g 73 -4.2 -4.66163 | opp_overlap 508130 508129, overlap 508130 ATGGACGGGATAATC GGTGGT CAC ACCGTC TTTTTCCGTCACGGT RD1_0524 509720 - 508443 - | hypothetical protein RD1_0525 511261 - 509717 - | hypothetical protein TERM 410 509963 - 509978 + g 71 -6 -4.36914 | overlap 509962 GTAGTCGACAATTTC CCGCGC TGTC GCGAGG TTTTCTGCCGCACCC RD1_0526 512244 - 511261 - | hypothetical protein RD1_0527 512729 - 512241 - | hypothetical protein RD1_0528 513709 - 512726 - | hypothetical protein TERM 411 512977 - 512961 - G 80 -10.1 -4.07687 | AGGTTGTCGGCAAAA GGGTCGG TCA CCAACCC AAGGATCAGGTCATT moxR 514709 - 513720 - | MoxR-like ATPase, putative TERM 412 513840 - 513823 - G 74 -12.7 -3.25204 | overlap 513819 513821 CGATGGCGAAACACA TCGGGCG CGAT CGCCCGA ACGTCCTGCGGATCG napD 515662 - 514706 - | nonspecific acid phosphatase TERM 413 515703 - 515726 + r 84 -13.8 -3.00946 | opp_overlap 515703, overlap 515700 TTCAAGGTGAAGAAA GGCCGCGCAG TTTC CTGCGCGACC TGATTTCTGCAAACA TERM 414 515726 - 515703 - R 100 -16 -4.20918 | opp_overlap 515703 515700 TTCAAGGTGAAGAAA GGCCGCGCAG TTTC CTGCGCGACC TGATTTCTGCAAACA RD1_0531 517349 - 515751 - | arylsulfatase TERM 415 516405 - 516394 - G 76 -7.2 -4.49556 | opp_overlap 516399, overlap 516395 TTCTCACCAAAGAAA GGCG TCAT CGCC GCATCCGGCCACGTG coxG 517958 - 517512 - | carbon monoxide dehydrogenase G protein, putative RD1_0533 518931 - 518053 - | metallo-beta-lactamase family protein TERM 416 518644 - 518655 + g 72 -2.2 -4.76041 | CTCACCGATACCGAT CTTG CCGC CGAG TTTTTGCTGAATATA RD1_0534 519393 - 518992 - | hypothetical protein RD1_0535 520498 - 519428 - | amine oxidase chrR 521172 - 520495 - | transcription negative regulator, putative TERM 417 521558 - 521531 - g 71 -7 -4.25104 | gap 1 TGCGGGTCACCAAAA GTGCCGAGCATGA CCG CCAC-CCCGGCAC ACTGAGCCTCACGGG RD1_0537 521314 - 522093 + | creatinine amidohydrolase RD1_0538 522162 - 522704 + | hydrolase, putative TERM 418 522767 - 522730 - T 74 -10.4 -3.60805 | opp_overlap 522730, overlap 522709 522732 522733 ACAGGTCAGCGCAAA GAGGGGACCGCGGCGC GCCGTT GCGCCACGGTCCAAAC GCATTCTTATGTGGC TERM 419 522765 - 522732 - T 75 -11.6 -3.38224 | opp_overlap 522730, overlap 522709 522730 522733 AGGTCAGCGCAAAGA GGGGACCGCGGCGC GCCGTT GCGCCACGGTCCAA ACGCATTCTTATGTG TERM 420 522764 - 522733 - T 83 -15.1 -2.62613 | opp_overlap 522730, overlap 522709 522732 522730 GGTCAGCGCAAAGAG GGGACCGCGGCGC GCCGTT GCGCCACGGTCCA AACGCATTCTTATGT RD1_0539 523604 - 522774 - | hypothetical protein TERM 421 523750 - 523790 + H 100 -15.5 -3.54951 | opp_overlap 523762, overlap 523769 CAGCGCCGGTGTGGT TTGGCCGAAAATCGGCGGC CCT GCGCCCGGTTTTTGGCCAA TTCTGTCCTGCGGTG RD1_0540 523935 - 525065 + | ABC transporter substrate binding protei TERM 422 525164 - 525176 + G 74 -3.3 -4.7254 | GAACGGTCTGCAATT CGGCG TGA TGCTG TTTTTGATGGCGGCT TERM 423 525666 - 525644 - g 71 -6.9 -4.14511 | opp_overlap 525647, overlap 525645 525647 AAGGGCAGGGGAAAA CGACCGCGA GATGA TCGCGGCCC TCGGGGTGGATATCT RD1_0541 525117 - 526037 + | branched-chain amino acid ABC transporter, permease protein, putative RD1_0542 526037 - 527017 + | branched-chain amino acid ABC transporter, permease protein, putative TERM 424 527236 - 527264 + G 73 -10.1 -3.63627 | opp_overlap 527230 527226, overlap 527237 AGGAACCGACGCGGC TGCGCGCGCGGGC AGG GCTCGGGCGCACG TTTCAGATCTCCGCA RD1_0543 527010 - 527759 + | ABC transporter subunit, putative TERM 425 527972 - 528018 + G 81 -5.7 -4.7497 | overlap 527959 527973 CGCCTGCCCAGCCAT C-GCGCCGCGCGGCTGGGCATCG GTC TGGTGCCT-GAGGGGCGGCGCTG TTTTTCGTCCCTGAC TERM 426 527973 - 528016 + G 73 -9.4 -3.99327 | gap 1, overlap 527959 527972 GCCTGCCCAGCCATC GCGCCGCGCGGCTGGGCATCG GTC TGGTGCCT-GAGGGGCGGCGC TGTTTTTCGTCCCTG RD1_0544 527756 - 528442 + | ABC transporter, ATP-binding protein, putative RD1_0545 529450 - 528533 - | glyoxylase family protein TERM 427 529321 - 529340 + g 79 -8.6 -4.56597 | opp_overlap 529309 AATGATACGTGCCCG GATCGTCA AAAT TGACGGTC TTTTTCACCAGACGC fadD 529666 - 531387 + | long-chain-fatty-acid--CoA ligase TERM 428 531468 - 531478 + G 75 -2.4 -4.98522 | overlap 531461 ATGGGGGCCTCGCTG ACGC CGC GCGA TTTTTATCTGGCCTT RD1_0547 531393 - 532274 + | putative sodium/bile acid symporter family protein dxs 534302 - 532374 - | 1-deoxy-D-xylulose-5-phosphate synthase ispA 535181 - 534312 - | geranyltranstransferase xseB 535445 - 535185 - | exodeoxyribonuclease VII, small subunit, putative petR 536222 - 535521 - | DNA-binding response regulator PetR, putative marR 536731 - 536219 - | MarR family transcriptional regulator ilvE 536900 - 537769 + | branched-chain amino acid aminotransferase TERM 429 537827 - 537861 + GT 71 -8.6 -3.84185 | GTGGAATTCTCATGC CATCGACCGGATCATG GCG CATTATGCGCTCGATG TTGTGTTTCGGTCGC RD1_0554 537729 - 538130 + | hypothetical protein TERM 430 538172 - 538190 + T 81 -8.1 -4.29472 | overlap 538167 CCTGACGACTCAGGG CGTCCCG GAGGG TGGGACG TTTGGTTTTGATTTG RD1_0555 539140 - 538166 - | hypothetical protein TERM 431 538577 - 538559 - G 85 -8.8 -4.68645 | GATGGAAAAGTAAAA CACGATGG AGG CCGTCGTG TCAGTCTGCACAAGG TERM 432 539023 - 539009 - G 70 -3.4 -4.64598 | overlap 539011 GAAGGAGCGGAAAAA CACGGC CTG ACCGGG GGGCACGTGGGGAGA aroC 540307 - 539207 - | chorismate synthase RD1_0557 540540 - 541520 + | thiamin ABC transporter, periplasmic thiamin-binding protein TERM 433 542363 - 542374 + G 80 -3.6 -5.1356 | overlap 542347 542359 GGCGTCGCGATCCTG CTCG GTGC CGGG TTTTTGTTGCTGCCG TERM 434 542560 - 542570 + G 75 -8.2 -4.27259 | overlap 542567 GCGTGGCAGTGTTGA GGCC ATC GGCC TTTTGGGTCTGTCTG thiP 541496 - 543052 + | thiamine transporter membrane protein RD1_0559 543583 - 543269 - | hypothetical protein TERM 435 543447 - 543465 + g 72 -11.6 -3.4072 | opp_overlap 543446 543445, overlap 543453 GGTGGGCAGCAAAGC CGCGCGGC ACT GGCGCGCG TTCTCGTGCAGAATA ribH 544277 - 543831 - | riboflavin synthase subunit beta TERM 436 544348 - 544335 - H 77 -8.1 -4.08216 | opp_overlap 544322 544321 TCACGTCCGCGAAAA GGCAC AGGC GTGCC CTCTTGCGGTCGCAT TERM 437 544801 - 544778 - g 73 -8.8 -3.91897 | gap 1, opp_overlap 544796 GCGCTGAGTGAGAAA CG-CCCGGCGA AGA TCGCCGTGTCG GGCCCCGACAGTTAC RD1_0561 544574 - 545200 + | transcriptional regulator, putative RD1_0562 545243 - 545845 + | glutathione S-transferase family protein, putative petA 546052 - 546612 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 438 547352 - 547342 - g 70 -3.2 -4.70626 | overlap 547333 GAAGAAGCCGAAAAA GACA CAC TGCC CTTCTGGCCTTACTT petB 546625 - 547968 + | cytochrome b petC 547983 - 548771 + | cytochrome c1 TERM 439 548833 - 548801 - f 100 -14.9 -4.86385 | opp_overlap 548804 ACTGCTAAAAAGAAA CAACCCCCCGAGC ACGAGCA GCTTGGGGGGTTG TCCGTCTGCACCTCT TERM 440 548804 - 548830 + F 84 -13 -3.39327 | opp_overlap 548801 GCTAAAAAGAAACAA CCCCCCGAGC ACGAGCA GCTTGGGGGG TTGTCCGTCTGCACC TERM 441 550021 - 550031 + G 76 -6.8 -4.46212 | overlap 550011 AACTTCGTGCTGCTT TGCG TCG CGCA TTTTCTGATGGGCGC RD1_0566 549751 - 550899 + | hypothetical protein RD1_0567 552769 - 551138 - | hypothetical protein TERM 442 553362 - 553391 + G 81 -4.9 -4.93318 | gap 1, opp_overlap 553362, overlap 553352 TTACCTCTACAGCAA CCGCCTTCGC-CCG TTG CGGAGCCAAGCTGG TTTTTGTCGATTGTG RD1_0568 553097 - 554263 + | TDP-4-oxo-6-deoxy-D-glucose transaminase RD1_0569 554268 - 555290 + | sulfotransferase domain-containing protein RD1_0570 555377 - 556240 + | hypothetical protein TERM 443 556364 - 556385 + G 75 -2.3 -4.91046 | CGTGGAAAGGATATT TCGACCT GATACGAA AGGTTGA TTTGTTTATTTTCTA RD1_0571 556309 - 557007 + | hypothetical protein RD1_0572 557015 - 558109 + | hypothetical protein TERM 444 558500 - 558486 - g 70 -4.2 -4.46155 | overlap 558475 TAGAGATTCAGAAAA TCGGCT ATG AGCAGA TCGAAACTCAGAATC TERM 445 558596 - 558615 + G 71 -5.6 -4.30161 | overlap 558598 558600 TTTGTGGAAAACCAC CTTACGCC GACG GGCGTGTG TTTGATTTTATGTCC RD1_0573 558164 - 559039 + | hypothetical protein TERM 446 559400 - 559379 - g 83 -4.3 -5.07652 | opp_overlap 559378 559379 TGCTTGAAAAGAAAA GCCATGATG TTGT CATCGGGGC CTTTGCGTCGCGTAA RD1_0575 559039 - 559965 + | glycosyl transferase, putative TERM 447 560158 - 560142 - f 78 -6.5 -4.56597 | TGCGCCTGCGAAAAA CCTGGAC GCC GCCCAAG ACGCGGATCATCTGC RD1_0576 560565 - 560699 + | hypothetical protein TERM 448 560825 - 560844 + T 87 -8.6 -4.67635 | gap 1, opp_overlap 560822 560817, overlap 560823 560828 CGAACGATAAATTCT GCATGCAGG GCG CCTGCA-GC TTTTATGCTTTTCAG flgI 561909 - 560806 - | flagellar basal body P-ring protein flgL 562910 - 561906 - | flagellar hook-associated protein TERM 449 562037 - 562025 - G 73 -4.7 -4.63932 | opp_overlap 562029 562034 GATCCGCCAACAAAA GTGCG TTG CGCGC GACTTCCGTGCTGGT flgK 564359 - 562914 - | flagellar hook-associated protein FlgK TERM 450 563190 - 563157 - G 86 -14.5 -3.30124 | opp_overlap 563156 563155 GTTCATGGCGGAGAA GGCTCCCGCGCCAAA ATCT CCTGACGCGGGTGCC CGTTTTGCGCTCAAG TERM 451 563554 - 563542 - G 73 -10.5 -3.65351 | opp_overlap 563540 GTACCGCCACCCAAA GCGCC TCT GGCGC TGTCCGTTCGAACGG TERM 452 563691 - 563681 - G 71 -6.8 -4.25104 | opp_overlap 563680 CGCCGTCGATCAAAA TGGC ACC GCCA GTTGAATAAAGGGCA flgE 565714 - 564404 - | flagellar hook protein FlgE, putative motB 566654 - 565815 - | chemotaxis protein MotB, putative TERM 453 566847 - 566833 - R 73 -5.6 -4.56775 | opp_overlap 566833 566832 566836 566842, overlap 566835 ACGCTTTGCCAAAAA GGTCAG GCC CTGGCC CGTTTTCTTGCCAGT RD1_0584 567725 - 566835 - | hypothetical protein pncA 567843 - 568451 + | pyrazinamidase/nicotinamidase pncB 568444 - 569736 + | nicotinate phosphoribosyltransferase RD1_0587 569800 - 569898 + | hypothetical protein RD1_0589 569981 - 570145 + | hypothetical protein RD1_0590 570328 - 570432 + | hypothetical protein TERM 454 570917 - 570929 + G 89 -4.8 -5.1963 | overlap 570912 TATCAATGATGTTCA GCGT CCGGA ACGC TTTTTCTTGGTTCGC RD1_0591 570864 - 571034 + | hypothetical protein RD1_0592 572700 - 571339 - | HlyD family secretion protein RD1_0593 574939 - 572702 - | putative cyclosin secreting ABC transporter, ATP binding protein RD1_0594 576594 - 574936 - | ABC transporter, ATP-binding permease protein, putative TERM 455 575547 - 575535 - G 71 -6.9 -4.25104 | opp_overlap 575544, overlap 575536 CGCCTGTCAGTAAAA CGCAG TCG CCGCG CTGCAATTGGAGCGA RD1_0595 579725 - 576660 - | type I secretion target domain-containing protein TERM 456 577224 - 577204 - G 93 -11.9 -4.42806 | GCACCGTCAAAGAAA TGCTGCAGA TTG TCCGCAGCA CCGTCACTGCTTTTC TERM 457 579062 - 579072 + g 71 -6.8 -4.2558 | CACTGCCAACGACGG CACC TGA GGTG TTTTCGTCAACGGTA TERM 458 579850 - 579817 - R 81 -14.5 -2.62184 | opp_overlap 579814 579813 TTCCGGGTCACATGA CGGCTGAGGCCCCCG CATC CGGGGGCCTCAACAT GCGGTTATTCGGCTG msrA 580376 - 579855 - | methionine sulfoxide reductase A TERM 459 579997 - 579982 - G 78 -10.4 -3.85698 | opp_overlap 579981 TCGGCTTCCCAGAAA TCGCCC ACCG GGGCGA CTTCGGTCACGACTT msrB 580822 - 580373 - | methionine sulfoxide reductase B gpo 580959 - 581507 + | glutathione peroxidase, putative TERM 460 581690 - 581726 + G 78 -13.5 -3.14132 | opp_overlap 581682 581685 581686 TCACGAACAAGGCGG CCATGGCCCCGTGCTGG ACG CCGGCGCGGGGACCGGG TTGGTGGCGGAGGCA RD1_0600 581511 - 582152 + | hypothetical protein RD1_0601 583068 - 582199 - | hypothetical protein TERM 461 582382 - 582325 - G 73 -8.9 -3.89614 | opp_overlap 582339 TGCAACGCCCAGAAA CGGGTTGAGGAAGTGGAACGTCGCCGC GCGC GTGGCGCCGATCCTGTTCACCAACCAG AACCATACGAATGTG TERM 462 583704 - 583720 + G 73 -4.3 -4.63932 | opp_overlap 583705 583706, overlap 583705 583706 GTCGTCTTTTGCACA ATTGCCG GTG CGGCAGG TTTTCTTGGCACGTG RD1_0602 583203 - 583832 + | amino acid transporter LysE TERM 463 583962 - 583943 - T 100 -11.4 -5.28176 | TGGAGGCATAAAAAA GGGCCACC CGCA GGTGACCC TTAAAGAGTTCGCGT hup 584274 - 583987 - | DNA-binding protein HU TERM 464 584263 - 584273 + g 74 -3.2 -4.84492 | TTGGGTCTTTGTCAT TGGT TTC GCCA TTTTATTCTCCTTCG TERM 465 584365 - 584391 + r 71 -4.5 -4.64657 | opp_overlap 584368, overlap 584387 ATTAGGTGGTGAAAT TAACGAAAAAC ATGCC GATTTTCGTTG TTTTTAACGGTTTGA amn 585875 - 584412 - | AMP nucleosidase TERM 466 584620 - 584603 - G 78 -6.9 -4.64844 | overlap 584605 CGGACACACATAAAA GCGTGCC ATAG GGCACCC GAAAGCGAAACCCGT TERM 467 585749 - 585711 - G 71 -5.9 -4.3739 | gap 1, overlap 585712 585713 CACCTGCGGATAAAA GGCACGCACG-CGGCAGT CCGG AGCGCCGTCGCGCATGGC CTGCGCGAAATGCGT ade 587674 - 585872 - | adenine deaminase TERM 468 587850 - 587867 + G 73 -9.9 -3.58343 | CTTTGATGCTGGCAT TCATCGC CTCA GCGATGA TTTCGCGATCGTGAC RD1_0606 587725 - 588144 + | hypothetical protein TERM 469 588465 - 588499 + F 80 -9.3 -4.0825 | gap 1, opp_overlap 588456 TGAAAACCGGAATCC TGCGC-GGCGAGGAGG AGCA CTTGCTTGCCAGCGCA TTGTTTCCTTGGGGG TERM 470 590572 - 590552 - g 78 -4.7 -4.74504 | ATGCGAATGGAAAAA GGCTTCC TGCACTG GAAAGCC GAACTGCTTACCGAA TERM 471 590651 - 590637 - g 89 -7.1 -5.12707 | TGAAACCCGAAAAAA GACCG TTCAT CGGTC AGCAGGCCTTGCAAA RD1_0607 588521 - 590956 + | dimethylglycine dehydrogenase, putative RD1_0608 591102 - 590923 - | hypothetical protein RD1_0609 591117 - 591872 + | hypothetical protein RD1_0610 591862 - 592851 + | putative sterol desaturase acdA 592957 - 594120 + | acyl-CoA dehydrogenase TERM 472 594189 - 594159 - f 84 -6.1 -5.03715 | gap 1, opp_overlap 594167 594168, overlap 594160 AGCAGGGTCAAAAAA GGCGCAACGCGCGA TCTG TCGCGC-TTGCTGC GACCCCGGTCCATCG TERM 473 595786 - 595796 + G 71 -8.2 -4.05446 | opp_overlap 595783 CGGCGCGAGACATGC CCGG CGA CCGG TTTCTCGTTGAGGAA RD1_0612 594183 - 596213 + | acyl-CoA synthetase, putative caiD 596200 - 596979 + | carnitinyl-CoA dehydratase TERM 474 597568 - 597546 - g 74 -3.4 -4.77036 | gap 1 GCGGATCATCAAAAA GGGT-CAGG TTTTTT CCCGCACCC ATGTCGACGATATTG RD1_0614 597019 - 597864 + | hypothetical protein TERM 475 597957 - 597936 - T 78 -6.5 -4.54727 | opp_overlap 597938, overlap 597938 GGTCGGAAACGAAAA TGGCGACAC CGAA GTGCCGCTA TTCGAACCAAACCTG RD1_0615 598626 - 597982 - | hypothetical protein TERM 476 598860 - 598835 - R 100 -6.7 -5.60993 | opp_overlap 598835, overlap 598837 TGTGGCATAAAAAAA GTCCGCCGATC CAAA GAACGACGGGC TGGTTTATTCAGAAG leuC 600294 - 598888 - | isopropylmalate isomerase large subunit RD1_0617 600485 - 600339 - | hypothetical protein TERM 477 600765 - 600793 + G 75 -8.2 -4.15565 | gap 1 CTCCGGGTCATTGTT CAGATCAAGCGCC GTCT GG-GCCTGATCTG TTTTGCGCTGATGGC RD1_0618 600528 - 601844 + | mechanosensitive ion channel protein, putative TERM 478 601861 - 601845 - f 71 -10.9 -3.28637 | opp_overlap 601859 GAGGAACAGGATTAA GGCAAGA CCG TCTTGCC ACCGCCTGATCCGGG TERM 479 602151 - 602163 + G 73 -4.7 -4.60797 | opp_overlap 602152, overlap 602152 TCGTACCGGCGCAAA ACGCC TAT GGCGG TTTTGTCTATGCGGG TERM 480 602162 - 602152 - g 71 -8.2 -4.08767 | opp_overlap 602151 602152 CGTACCGGCGCAAAA CGCC TAT GGCG GTTTTGTCTATGCGG RD1_0619 601916 - 602656 + | hypothetical protein RD1_0620 602813 - 603181 + | iojap-like protein RD1_0621 603197 - 603667 + | hypothetical protein TERM 481 603679 - 603696 + T 77 -11.3 -3.51232 | opp_overlap 603676 603671, overlap 603675 CTGACAAGAGAGCCC GCGCTGT GTTT ACAGCGC TTGATTTCCGGCCAG RD1_0622 604272 - 603688 - | hypothetical protein RD1_0623 604746 - 604372 - | hypothetical protein RD1_0624 605457 - 604759 - | hypothetical protein TERM 482 605258 - 605224 - G 93 -8.6 -5.08824 | gap 1 GGTGGAGGCAAAAAA CGCAGTTCCCTGCCG CAGGGC CGACAGG-ATCTGCG CATCAAAGACGCGGG glcD 605531 - 606985 + | glycolate oxidase, subunit GlcD TERM 483 607112 - 607126 + G 76 -7 -4.44667 | overlap 607114 ATGCATATACAGGGG GGCGCG ACC CGCGGC TTTGTTGTTCCGGGG TERM 484 607362 - 607348 - g 73 -9.2 -3.85698 | GGTTCTGGCGACAAA CGCGAG TGG CCCGCG GCGGATACAGGGTGG glcE 607037 - 608182 + | glycolate oxidase, subunit GlcE TERM 485 608405 - 608387 - g 76 -8.9 -4.13945 | overlap 608365 608364 ATCCGGATGCGAAAA CGGTCAA ACATA TTGACCG CTGCCTGTCCTGTCT glcF 608182 - 609507 + | glycolate oxidase, iron-sulfur subunit RD1_0628 609598 - 610419 + | trypsin domain-containing protein TERM 486 610860 - 610840 - g 71 -8.2 -4.08216 | TGAGGTGCGTGAAAA CGCGCTGA TCGTC TCTGCGCG CAAGGCCGAGGAAAA ibpA 610631 - 611098 + | HSP20 family protein RD1_0630 611400 - 611188 - | hypothetical protein RD1_0631 612698 - 611397 - | ABC transporter, periplasmic substrate-binding protein, putative TERM 487 612994 - 612984 - g 74 -5.4 -4.56597 | opp_overlap 612988, overlap 612967 GTCTGTTTTGAAAAA CAGT CCA ACTG GGGTGGTTTGTGGAA RD1_0632 612813 - 614213 + | flavin-containing monooxygenase TERM 488 614261 - 614235 - T 93 -13.7 -3.85698 | opp_overlap 614231 614230 614259, overlap 614236 CTTTTTGCGCAGAAA CCGGCCGCACT TTCAC AGTGCGGCCGC GTAGCGTTTAAAGGG TERM 489 614260 - 614236 - T 93 -17.2 -2.91276 | opp_overlap 614231 614230 614259, overlap 614235 TTTTTGCGCAGAAAC CGGCCGCACT TTCAC AGTGCGGCCG CGTAGCGTTTAAAGG ald 615888 - 614461 - | aldehyde dehydrogenase family protein, putative RD1_0634 616042 - 616695 + | anti-oxidant AhpCTSA family protein TERM 490 616736 - 616700 - Tf 85 -11.3 -3.92522 | CGCCAAGCTGAGAAA CTGGCCCGTGCCCCGGG TTA CGCAGGGTGCGGGCCTG CCACTTGAGCGTCAT RD1_0635 617820 - 616843 - | glycosyl transferase, putative TERM 491 617153 - 617139 - Gf 73 -9.2 -3.86346 | GGATTTCTTCATAAA CGGCCG CGT CAGCCG CCCATGCGGTTGGCA TERM 492 617330 - 617342 + gF 80 -10.5 -3.90291 | overlap 617329 GTCAGATCGGCCCGG CGCGC GGC GCGCG TTTCCTTGCGCAGAT TERM 493 617716 - 617726 + gF 70 -6.8 -4.0896 | opp_overlap 617715 GATTTCGCAGGCAAT TGGC ACA GCCA TTTTGCCCCAGCTTT TERM 494 618596 - 618577 - gR 74 -3.6 -4.7373 | CGACCCCAGGAAAAA GTGGAA ATATCACA TTCCAC CGTTCAAACGGTTTC RD1_0636 617819 - 618772 + | glycosyl transferase, putative TERM 495 618856 - 618885 + Tr 75 -6.3 -4.62069 | opp_overlap 618861, overlap 618861 AGTCATAGCCAAACA AAAAACCCCGACG TCGC CGCCGGGGTTTGC TTTTTAAGGTGAAGC TERM 496 618880 - 618861 - TR 100 -12.8 -5.65927 | opp_overlap 618856 618861 TAGCCAAACAAAAAA CCCCGACG TCGC CGCCGGGG TTTGCTTTTTAAGGT TERM 497 618861 - 618880 + Tr 90 -10.6 -4.32649 | opp_overlap 618861, overlap 618856 TAGCCAAACAAAAAA CCCCGACG TCGC CGCCGGGG TTTGCTTTTTAAGGT pnp 621041 - 618906 - | polynucleotide phosphorylase/polyadenylase RD1_0638 623049 - 621496 - | Na(+)-linked D-alanine glycine permease RD1_0639 623497 - 623060 - | universal stress family protein, putative RD1_0641 624362 - 623772 - | amino acid transporter LysE TERM 498 624046 - 624065 + g 81 -7.8 -4.71061 | GCCTGCAAGGCGATC CCGCCG ATGACGCC CGGCGG TTTTTGCCTCTCGAT TERM 499 624436 - 624419 - R 100 -12.7 -5.14563 | opp_overlap 624419 CCGCCCATTAAAAAA CCGCGTC AAAA GACGCGG TTTTATCGGTATTGC TERM 500 624419 - 624436 + r 100 -12.7 -4.4727 | opp_overlap 624419 CCGCCCATTAAAAAA CCGCGTC AAAA GACGCGG TTTTATCGGTATTGC rpsO 624806 - 624537 - | 30S ribosomal protein S15 TERM 501 624643 - 624657 + g 84 -11.4 -4.00122 | overlap 624636 ACCATCTTGAGCAGG CCACGG CGG CCGTGG TTGTCTTTCTTATGC RD1_0643 625240 - 624977 - | type I secretion target repeat-containing protein TERM 502 625216 - 625229 + g 85 -3.7 -5.44119 | CATGATCCAAAACTT CGCCC GTTT GGCCG TTTTTTTCCAATCGC RD1_0645 626543 - 625962 - | hypothetical protein TERM 503 626669 - 626649 - R 100 -14.7 -5.79595 | opp_overlap 626647 TCTGAAAACAAAAAA CCGCCCCGA AAA TCGGAGCGG CCTTGATCAGGGGGT RD1_0646 627233 - 626688 - | hypothetical protein TERM 504 627134 - 627124 - G 71 -5.4 -4.43213 | CCGAAGACATCAAAA GCAA TCG TTGC AAAGGCGCCGGCAGT TERM 505 627256 - 627280 + r 71 -7.8 -4.04206 | gap 1, overlap 627256 CACGTGAATGCTGTT C-ACGCACCGC TGAT GCGGTGCGCCG TTTCTGTAACAATCG truB 628275 - 627364 - | tRNA pseudouridine synthase B TERM 506 627502 - 627537 + g 77 -11.1 -3.60098 | AACCATACCGGGGTT GCCATTGCGCAGGCG CACCGC CCCCTCCGCAGTGGC TTTGACCTCGGGCAT RD1_0648 629121 - 628381 - | hypothetical protein TERM 507 628453 - 628433 - G 70 -4 -4.67641 | gap 1 AGGGCAAAACCAAAA TCCCG-CCT GCCC AGATCGGGA GCATATAGTCGCGAG rbfA 629549 - 629118 - | ribosome-binding factor A dapB 629629 - 630447 + | dihydrodipicolinate reductase RD1_0651 630538 - 630894 + | hypothetical protein TERM 508 630951 - 630980 + T 100 -10.1 -4.87803 | gap 1, opp_overlap 630951 TGTAAAACGCAAGAA GGCATCG-CGTC AGAAATC GACGGCGATGCC TTTTCTTTCCCAATC TERM 509 630980 - 630951 - T 80 -10.8 -3.81879 | gap 1, opp_overlap 630951 TGTAAAACGCAAGAA GGCATCG-CGTCA GAAAT CGACGGCGATGCC TTTTCTTTCCCAATC RD1_0652 631154 - 630960 - | hypothetical protein TERM 510 631847 - 631863 + G 77 -7.9 -4.36914 | overlap 631848 AAAATGCAGGTCAGG TCTCGGC CAT GCCGGGG TTTTCTGACGGAACA RD1_0653 631240 - 632511 + | rRNA methyltransferase RsmB TERM 511 633536 - 633522 - g 73 -10 -3.70722 | opp_overlap 633518 633503, overlap 633519 CGGATCAAGACACAA CAACCC GAT GGGTTG TCGATGGGTTTTGCG RD1_0654 632577 - 634364 + | hypothetical protein TERM 512 634404 - 634414 + G 71 -8.2 -4.05026 | overlap 634403 CGACCTTGCCCCGCT GCGC CGC GCGC TTCTTTCCGTTTCAG purH 634384 - 635970 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase lspA 635985 - 636470 + | signal peptidase II, putative RD1_0657 636537 - 637040 + | hypothetical protein pqqE 637158 - 638489 + | M16 family peptidase putative TERM 513 638586 - 638564 - g 70 -9.8 -3.43071 | GTGGATATCAAGGAA GTCAACACGC CCG GCGGGCTGAC GGCCTGGCTGGTCAA TERM 514 638797 - 638817 + G 74 -7.5 -4.36914 | TGGTGTGGACGATGA CGCGCTG TCGGTCT CGGCGCG TTTTCTCACCGAGAA RD1_0659 638489 - 639805 + | M16 family peptidase putative ald 642190 - 639848 - | aldehyde dehydrogenase family protein, putative TERM 515 639971 - 639985 + g 73 -4.2 -4.60924 | CCATGTGCGTTTGAG GTTGCT GGC AGCGGC TTTTTCAACCGTTTC TERM 516 640701 - 640719 + g 79 -8.8 -4.25848 | overlap 640711 TCGGCGGGTGATGCC TTGCCCGT AAC GCGGGCGA TTTTCCTCAGCGGTT deoC 643174 - 642218 - | deoxyribose-phosphate aldolase TERM 517 644496 - 644528 + G 95 -13.3 -4.09739 | opp_overlap 644489 644488 GGATCAAGCCTCAAG GCCGGTGTCCGCGCC GCC GCCGCAAACACCGGC TTTTCAGGAGGTTGC mutL 643354 - 645186 + | DNA mismatch repair protein RD1_0663 645183 - 646418 + | RmuC domain-containing protein RD1_0664 646415 - 646513 + | hypothetical protein uxuA 647697 - 646510 - | mannonate dehydratase TERM 518 647447 - 647474 + g 80 -11.3 -3.83324 | AGGCTTTTCTTATAG GCCAGCAGATG ATCTGC CATCTGCGGGC TTTGCGTCTTTATGC RD1_0666 648746 - 647694 - | oxidoreductase, putative RD1_0667 649749 - 648748 - | oxidoreductase, putative RD1_0668 650783 - 649746 - | oxidoreductase, putative TERM 519 649916 - 649960 + g 71 -7.8 -4.128 | gap 1, overlap 649917 ACGCGTGGGTAAAGG C-CATGGGGTCCGCGCCGC CGCCAGTC GTGGCGCTGGCGCCATGTG TTTCTGTCTCCCCGT TERM 520 649917 - 649958 + g 77 -11.5 -3.65996 | overlap 649916 CGCGTGGGTAAAGGC CATGGGGTCCGCGCCGC CGCCAGTC GTGGCGCTGGCGCCATG TGTTTCTGTCTCCCC kdgK 651661 - 650780 - | 2-dehydro-3-deoxygluconokinase RD1_0671 652542 - 651658 - | hypothetical protein garR 653430 - 652543 - | 2-hydroxy-3-oxopropionate reductase TERM 521 652586 - 652571 - G 74 -5.4 -4.46233 | TTAACGGCAAAGAAA TCAACC ATCT GGCTGA CCATGTCATCGCCAC RD1_0673 654321 - 653443 - | phytanoyl-CoA dioxygenase family protein TERM 522 653844 - 653884 + g 76 -8.9 -4.07885 | opp_overlap 653844 CATGATGATCATAGA CCGGCCCCTTATGGCTTTC CGG GTAGACCATAAGCGGCCCG TTTTCAGCGGCCATA RD1_0674 655330 - 654308 - | oxidoreductase, putative TERM 523 654486 - 654517 + g 70 -10.3 -3.5525 | gap 2 GGTGGTTTCGTGTTG TCCGCGCGGACCAAA GGTT TTTGG-C-GCGCGGA TTTCCCCCAGTCTGT TERM 524 654754 - 654707 - G 82 -12.6 -3.57144 | gap 1, opp_overlap 654738 654741 CGCCCCATCTTCAAA GGCCAGCGCGATGGCAC-CGGAT TCG ATCCGCGTCTCCCCGCGCAGGCC GCGCCCGCGCAAGGC garD 656835 - 655327 - | D-galactarate dehydratase, putative TERM 525 655624 - 655599 - G 74 -7.5 -4.41348 | CCGTGGTGAAACAAA CCAGATTGCAG CCCC CAGCGATCTGG CCCGTGACGGAAGCC RD1_0676 657797 - 656847 - | hypothetical protein TERM 526 657635 - 657654 + g 80 -15 -3.01791 | opp_overlap 657623 AATCGAGTCTGCCGG GGGGCGTG CTGA CACGCCCC TGTTCGAACCAGCCT RD1_0677 659435 - 657813 - | TRAP dicarboxylate transporter, DctM subunit, putative RD1_0678 660058 - 659435 - | TRAP dicarboxylate transporter, DctQ subunit, putative RD1_0679 661471 - 660302 - | racemase, putative TERM 527 661517 - 661490 - R 100 -13.4 -4.18018 | opp_overlap 661490 661491, overlap 661492 CTGCCTGAGGGAAAA GAGGCAGGGCCA TTTC TAGCCCTGCCAC TATGTCGATAACGCG TERM 528 661490 - 661517 + r 71 -11.2 -2.91264 | opp_overlap 661490 661492, overlap 661491 CTGCCTGAGGGAAAA GAGGCAGGGCCA TTTC TAGCCCTGCCAC TATGTCGATAACGCG TERM 529 661515 - 661492 - R 95 -14.6 -3.69216 | opp_overlap 661491 661490, overlap 661490 GCCTGAGGGAAAAGA GGCAGGGCCA TTTC TAGCCCTGCC ACTATGTCGATAACG RD1_0680 662565 - 661543 - | TRAP dicarboxylate transporter, DctP subunit, putative TERM 530 662531 - 662547 + g 95 -12.3 -4.21631 | opp_overlap 662525 GCCAATGCAGCGACT GCGGCAA CGC TTGCCGC TTTCTTCAGTAGGTT TERM 531 662600 - 662620 + G 89 -11.1 -4.1899 | AAGCGTTGTTATTGC TGAGCCGCC GCT GGCCGCTCA TTTTGAATACGCTGG RD1_0681 662590 - 662688 + | hypothetical protein RD1_0682 662762 - 663439 + | transcriptional regulatory protein, putative RD1_0683 664383 - 663412 - | hypothetical protein TERM 532 664052 - 664023 - G 76 -13.5 -3.07043 | opp_overlap 664022 664044, overlap 664040 TGGACGAGGTGAACA CCACCCGCGGAAC ATAA GCCCCGCCGGTGG CATTATGCTCGGACC glxR 665267 - 664380 - | 2-hydroxy-3-oxopropionate reductase, putative TERM 533 665347 - 665370 + H 91 -6.7 -5.14965 | GCTAACCTAAAGCAG CCATTGGAC CAGCCC GTCCGGTGG TTTTTTGATGAAAGT RD1_0685 665467 - 666228 + | oxidoreductase, putative RD1_0686 666225 - 668024 + | dihydroxy-acid dehydratase RD1_0688 668058 - 668906 + | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, putative RD1_0689 668907 - 669836 + | putative D-isomer specific 2-hydroxyacid dehydrogenase RD1_0690 669838 - 670938 + | racemase, putative chrR 671588 - 670935 - | anti-sigma factor ChrR rpoE 672252 - 671596 - | RNA polymerase sigma factor RpoE TERM 534 673633 - 673617 - g 72 -2.2 -4.7497 | overlap 673632 GGCATGGATGAAAAA CGGCTT TCATG AAGACG GACTGTCCAGCGCGG RD1_0693 672406 - 673704 + | dehydrogenase, putative TERM 535 674327 - 674361 + G 76 -12.1 -3.31792 | gap 1, opp_overlap 674312, overlap 674309 674326 CGGCGCAATCCTGCG CGCGGCGTTTCGCCGA CCTC TTGGCGCG-CGCCGCG TTCTGGCGCTCATCC RD1_0694 673701 - 674459 + | hypothetical protein TERM 536 674696 - 674726 + G 89 -10.5 -4.62069 | gap 1 TATGTCTCCATTGCT GCGCTGATCATGGC TGTT GCCATGGTT-GCGC TTTTTGCGGTGCCGC TERM 537 675087 - 675099 + G 76 -6.9 -4.48713 | opp_overlap 675086 675085, overlap 675086 CGGTGCTCAAAGACC CGCTG GCG CGGCG TTTGTTGTTGATCGC TERM 538 675256 - 675270 + G 80 -10 -4.07568 | CGCCCCGGTCTGGAG CGCTCT GGC AGAGCG TTTTGGGCCGCGCAA TERM 539 675295 - 675321 + G 71 -6.6 -4.20354 | gap 1, overlap 675297 GCGCAATGTACTTTT GCTTGCGATGG GTCTGG CCATCGC-GGC TTTTGGACTTACCTT RD1_0695 674459 - 675688 + | sodium:galactoside symporter family protein, putative RD1_0696 675698 - 676252 + | hypothetical protein TERM 540 676950 - 676960 + G 70 -4.6 -4.48902 | GGGCAGCCAATTCCT GCCG GAC TGGC TTTATTTCCGTATCT RD1_0697 676252 - 676983 + | oxidoreductase, putative RD1_0698 678039 - 676987 - | saccharopine dehydrogenase, putative TERM 541 677315 - 677304 - G 71 -7.2 -4.2828 | overlap 677305 GTGCAGGGACGAAAA CCGG CGTG CCGG GACGCGCCAGCACAC gst 678656 - 678036 - | glutathione S-transferase RD1_0700 679320 - 678667 - | phosphoglycerate mutase, putative TERM 542 679035 - 679047 + g 70 -3.4 -4.65895 | overlap 679032 GATCCGTCGGAAAGG GAAC CCCGT GTTC TTTTTCCATGGCACG RD1_0701 679438 - 679563 + | hypothetical protein RD1_0702 679654 - 681624 + | putative AMP-binding enzyme TERM 543 682210 - 682224 + G 79 -9.2 -4.2704 | ACTGGCGCGGGCCTT GGCGGC GGA GCCGTC TTTGTTGCTGCTGGA RD1_0703 681662 - 682480 + | branched-chain amino acid ABC transporter, ATP-binding protein, putative TERM 544 682597 - 682612 + G 74 -3.2 -4.82901 | ATGCCTGAACAACTG CTTTGG ACCG CCGAGG TTTTTCTGAACGGGC RD1_0704 682582 - 683571 + | branched-chain amino acid ABC transporter, permease protein, putative RD1_0705 683940 - 683602 - | hypothetical protein RD1_0706 684146 - 685222 + | branched-chain amino acid ABC transporter, permease protein, putative TERM 545 685281 - 685266 - f 78 -11.8 -3.21395 | overlap 685264 AGCCTGCTGATAAGA CGCCGG ATCG CCGGCG CATCGGACAACAATT RD1_0708 685313 - 686596 + | hypothetical protein TERM 546 686648 - 686598 - f 83 -11.8 -3.72576 | gap 1, overlap 686600 686601 CGGGGTGTGACTAAA CAC-TGACGCGTTTCCCGGCGGC GGATCT GTCGCCGGGGAACGCACCACGAG ACAGGCCGGACGTCC TERM 547 686645 - 686600 - f 88 -13.2 -3.44848 | overlap 686598 686601 GGGTGTGACTAAACA CTGACGCGTTTCCCGGCGGC GGATCT GTCGCCGGGGAACGCACCAC GAGACAGGCCGGACG TERM 548 686644 - 686601 - f 89 -16.7 -2.66695 | overlap 686600 686598 GGTGTGACTAAACAC TGACGCGTTTCCCGGCGGC GGATCT GTCGCCGGGGAACGCACCA CGAGACAGGCCGGAC RD1_0709 686729 - 687556 + | branched-chain amino acid ABC transporter, ATP-binding protein, putative TERM 549 687638 - 687614 - f 80 -9.3 -4.13767 | gap 1, opp_overlap 687615, overlap 687615 CTGGCGATTGCAAAA GCC-CGCTGC GGATTT GCAGCGAGGC GTGCCGTGCAGGATA paaK 687719 - 688954 + | phenylacetate-CoA ligase, putative RD1_0711 689085 - 689789 + | hypothetical protein RD1_0715 690832 - 691650 + | putative voltage-gated K+ channel protein RD1_0716 691586 - 692329 + | hypothetical protein TERM 550 692342 - 692362 + F 100 -9.6 -5.243 | opp_overlap 692343, overlap 692343 TGAGCGCATAAAAAA AGCCGCCC GGGTG GGGCGGCC TTTTTTCGTGATTTG TERM 551 692343 - 692361 + F 86 -13.1 -3.72953 | opp_overlap 692343, overlap 692342 GAGCGCATAAAAAAA GCCGCCC GGGTG GGGCGGC CTTTTTTCGTGATTT TERM 552 692361 - 692343 - f 100 -13.1 -5.626 | opp_overlap 692342 692343 GAGCGCATAAAAAAA GCCGCCC GGGTG GGGCGGC CTTTTTTCGTGATTT TERM 553 692728 - 692713 - f 76 -3.2 -5.00616 | gap 1, opp_overlap 692715, overlap 692700 692699 692714 692715 TGGGGCGCGAAAAAA CG-CGCC GGT AGCGGCG TCTATAAAAGGAGTC TERM 554 693448 - 693462 + G 76 -9.2 -4.07885 | ACAAGGGTTTCGCGT GGCGCG CAA TGCGCC TTTTGCCGGGGCCTA hutG 692810 - 693670 + | N-formylglutamate amidohydrolase, putative dinB 694926 - 693673 - | DNA polymerase IV TERM 555 695063 - 695038 - R 93 -11.8 -4.2349 | overlap 695039 CCGTCAGATCGAAAA GCCCCCCGCT GCGTGA AGCGGGGGGA GGTAACGAACCTCAG TERM 556 695062 - 695039 - R 91 -15.3 -3.13773 | overlap 695038 CGTCAGATCGAAAAG CCCCCCGCT GCGTGA AGCGGGGGG AGGTAACGAACCTCA pyrF 696000 - 695269 - | orotidine 5'-phosphate decarboxylase TERM 557 696116 - 696085 - H 100 -13 -4.57073 | CATGCGTGTGAAAAA GCCCGAACACAGTC GGCG GACGATGCTCGGGC ATAGGATCAATTTAC clpB 696573 - 699191 + | ATP-dependent Clp protease, ATP-binding subunit ClpB TERM 558 699245 - 699205 - T 70 -6.8 -4.11692 | opp_overlap 699211, overlap 699211 GACCCACCTTGAAAA TTGAAATGGCCCGGCAAA TCAGT TTTGCCGGGCCATTGTTT TGCGCAATTGTGAAT TERM 559 699239 - 699211 - T 100 -19 -3.92659 | opp_overlap 699211, overlap 699205 CCTTGAAAATTGAAA TGGCCCGGCAAA TCAGT TTTGCCGGGCCA TTGTTTTGCGCAATT TERM 560 699211 - 699239 + T 100 -19 -4.18164 | opp_overlap 699205 699211 CCTTGAAAATTGAAA TGGCCCGGCAAA TCAGT TTTGCCGGGCCA TTGTTTTGCGCAATT RD1_0722 699848 - 699363 - | hypothetical protein TERM 561 700479 - 700464 - g 81 -6 -4.84359 | opp_overlap 700471 700473 TTACCCTGACAAAAA CGGGCC TGAT GGACCG GCTGGCCGGGCGCAT RD1_0723 700100 - 700744 + | hydrolase, putative RD1_0725 700873 - 701778 + | putative sulfite oxidase subunit YedY RD1_0726 701807 - 702412 + | putative sulfite oxidase subunit YedZ TERM 562 703815 - 703795 - f 71 -9.7 -3.5594 | overlap 703786 AAGTTAGGGGTGAAA TCCCGAGGC TCA ACCTCGGAA CTGCCTCTAAAACTC TERM 563 705510 - 705527 + F 75 -4.1 -4.87665 | AGCTGAGACGGCCGC GATAGAC GACA GTCTTTC TTTTTCTGGATCAAA TERM 564 706625 - 706612 - f 74 -6.7 -4.30576 | opp_overlap 706621 GTGGGACGACCAAAA CAACC AGGA GGTTG GCTTAGAAGCAGCCA TERM 565 706773 - 706816 + F 75 -6.6 -4.52589 | opp_overlap 706773 706774, overlap 706766 706774 CGTAGTGTGACATAA TTCCATGTCTCCTTGATCCC CTCG GGGAAATTGGAGACGTGGAG TTTTCTGTGAAGCCG TERM 566 707295 - 707282 - f 74 -4.5 -4.7254 | ACTGTTTATTAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC RD1_0732 708589 - 708714 + | hypothetical protein TERM 567 709743 - 709712 - T 74 -2.2 -5.055 | TCAATTGCGAAAAAA TACTGCCCCGAACA TGTA TTTTAGGAGCTGTA GTCCGTGAGCTTTCA RD1_0733 710048 - 709902 - | hypothetical protein RD1_0734 710114 - 710887 + | hypothetical protein RD1_0735 711817 - 711419 - | hypothetical protein TERM 568 711699 - 711681 - G 74 -3.8 -4.7889 | overlap 711689 ACAAAGAGGTAAAAA TGCGGAAA GGC CTTGCGCA GCGTTGGGCCTGCCA RD1_0736 711930 - 711814 - | hypothetical protein ubiG 712547 - 711927 - | 3-demethylubiquinone-9 3-methyltransferase TERM 569 712432 - 712416 - GR 77 -3.6 -5.00616 | CTTGCGGTCAAAAAA TGCCAG CCGAC CGGGCA CCATTGCCTTGAGGG RD1_0738 713355 - 712510 - | hypothetical protein RD1_0740 715145 - 713850 - | TRAP-type C4-dicarboxylate transport protein, permease component TERM 570 714433 - 714402 - G 78 -6.4 -4.63172 | gap 1, opp_overlap 714404 714405, overlap 714394 714403 714404 GACCAAAGCATAAAA CG-CGGCCACTGCGG CGG CCTCTGTGGGCGTCG TTACACCTCCGTAGA RD1_0741 715684 - 715142 - | hypothetical protein TERM 571 715733 - 715705 - R 100 -17.5 -3.64822 | opp_overlap 715704 715703 715701, overlap 715712 AGGTCCGCAGGGAAA GGGGAAAGGCAGC CGC ACTGCCTCTCCCC GCTGTTTCAAATCAG RD1_0742 716740 - 715745 - | C4-dicarboxylate-binding protein, putative RD1_0743 717463 - 716807 - | putative transcriptional regulator dapA 718325 - 717456 - | dihydrodipicolinate synthase, putative yihV 718424 - 719293 + | sugar kinase yihV, putative TERM 572 719775 - 719799 + F 86 -10.8 -4.09864 | CGGAAACCATTCCAC TCTGCGTCAA TTGAT TTGGCGCAGA TTTTACCGCCTGCAT thiD 720200 - 720979 + | phosphomethylpyrimidine kinase TERM 573 721332 - 721352 + G 70 -4.5 -4.56775 | opp_overlap 721317, overlap 721351 GCAGATCGCCGAGTA CGAGCCGCT TTT GGCGGAACG TTTTTCCAAGGCGCT thiO 720976 - 721956 + | thiamine biosynthesis oxidoreductase ThiO TERM 574 721971 - 721991 + G 72 -12.5 -3.02461 | opp_overlap 721970 AAGCACTTGAGACAG GCGCGCCCA CAC TGGCCGCGC TCTTGGAAGAGCTTG thiS 721934 - 722131 + | thiamine biosynthesis protein ThiS, putative TERM 575 722777 - 722795 + G 71 -8.1 -4.06502 | gap 1, opp_overlap 722766, overlap 722781 AAAAGCGGGCGATCC GGCG-GCG ATGG CGCACGCC TTTGCTTTGGCGGTC thiG 722133 - 722903 + | thiazole synthase thiE 722900 - 723496 + | thiamine-phosphate pyrophosphorylase thiF 723493 - 724449 + | thiamine biosynthesis protein ThiF, putative TERM 576 725090 - 725131 + G 73 -4.3 -4.65895 | gap 1 GACGAATTGATCTAC GTGGCGAATCCCGACCGG ATGGATA CCGATCAGG-TCCGCCGC TTTTTGCGTGCGACG RD1_0752 724460 - 725395 + | ABC transporter, periplasmic tenA 725392 - 726060 + | transcriptional activator, putative RD1_0754 726069 - 726758 + | ABC transporter, ATP-binding protein, putative tenA 726755 - 727408 + | transcriptional regulator, putative TERM 577 727693 - 727720 + G 76 -13.4 -3.0806 | opp_overlap 727693, overlap 727686 CTGGTGTTCAGCCAA GCGGTGCCGGTG TTTG CACTGGCACCGA TCTTGACCCTTTGGC RD1_0756 727405 - 728148 + | ABC transporter, permease protein, putative TERM 578 728343 - 728377 + T 81 -8.4 -4.3255 | overlap 728339 GCTTTGTACCGGAAT GTTGCGCCGACCACCT ATC AGGCTGCCGGCTCAAC TTTCTTGATTGCGCG arcD 730001 - 728709 - | arginine/ornithine antiporter TERM 579 729846 - 729828 - G 74 -6.6 -4.30809 | CAACACCCAGTAAAA CACGTTGC CGA GCATCGCG CTGGCCCCATAGCCA TERM 580 729937 - 729916 - G 73 -5.1 -4.72272 | TTGGCGTAGCAAAAA CGCCCGAAT CCAG ATTGGGACG TCGCTGCGCCAGAAA TERM 581 730119 - 730142 + r 80 -10.2 -3.86916 | GGAAGCGATATTTTG CGCGCAGACG GAGT CGACTGTGCG TTTGCTCTCGTGGTG TERM 582 730211 - 730190 - R 71 -10.1 -3.53012 | gap 1, opp_overlap 730207, overlap 730191 CCTGGTGTTCCCAAA GCGCCGCAGC CTG GCCGC-GCGC GTGTCACAAAAAATC TERM 583 730207 - 730238 + r 86 -9.5 -4.25104 | gap 1, opp_overlap 730190 730191 GCCGCAGCCTGGCCG CGCGCGTGT-CACA AAAAA TCTGAACACGCGCG TTTTAGTAAGCGGGG arcA 730687 - 730241 - | arginine deiminase RD1_0759 731604 - 732605 + | RND efflux membrane fusion protein, putative TERM 584 733243 - 733254 + T 72 -2.2 -4.84359 | overlap 733240 TTGCAATCGTTCTGG CCGT TGTC ATGG TTTTTCTGGGGCTGC RD1_0763 736136 - 735357 - | hypothetical protein TERM 585 735485 - 735473 - G 71 -9.1 -3.81339 | TACGCAGAACCGAAA TCGCC GCG GGCGA GGTGAAGGGTACCAG TERM 586 736237 - 736225 - R 76 -10.5 -3.74345 | overlap 736226 ATCGACACATCGAAA CGCGC AGA GCGCG GCTCCGCACTACGGT RD1_0764 736832 - 736527 - | hypothetical protein RD1_0765 738365 - 736914 - | hypothetical protein RD1_0766 739432 - 738365 - | serine protease, putative TERM 587 739924 - 739955 + r 91 -15.2 -3.14878 | opp_overlap 739913 739931, overlap 739929 TGAATCTCGCGCAGG CTCAAGACCCCGGC GAGA GCTGGGGTCTTGAA TGTTCCCTTCACACC TERM 588 739929 - 739950 + r 87 -13.7 -3.20236 | opp_overlap 739913 739931, overlap 739924 CTCGCGCAGGCTCAA GACCCCGGC GAGA GCTGGGGTC TTGAATGTTCCCTTC RD1_0767 741988 - 739964 - | hypothetical protein TERM 589 742516 - 742542 + r 100 -18.8 -3.60627 | opp_overlap 742512 AAATTCAGACATTGA GCCGCAGCCAAG TCG TTTGGCTGCGGC TTTCCAATCAGCTGG RD1_0768 743563 - 742550 - | hypothetical protein RD1_0769 745483 - 743588 - | hypothetical protein TERM 590 744616 - 744598 - G 73 -5.2 -4.58395 | opp_overlap 744607 CCCAGCCTTCAAAAA GCGCCG CGAAGTC CGACGC TGCATCCGGCGCGGG RD1_0770 746226 - 745480 - | ABC transporter, permease protein, putative RD1_0771 747189 - 746242 - | ABC transporter, ATP-binding protein, putative TERM 591 747308 - 747339 + r 100 -10.8 -5.05079 | gap 1, opp_overlap 747279, overlap 747310 747311 TTCTGGACGGTCTCG TGAGGTGGCGCAGGC AGG GCCCGCGTCACC-CG TTTTTATCTGGTTGT TERM 592 747310 - 747338 + r 81 -12.3 -3.61421 | overlap 747308 747311 CTGGACGGTCTCGTG AGGTGGCGCAGGC AGG GCCCGCGTCACCC GTTTTTATCTGGTTG TERM 593 747311 - 747337 + r 86 -15.8 -2.75768 | overlap 747310 747308 TGGACGGTCTCGTGA GGTGGCGCAGGC AGG GCCCGCGTCACC CGTTTTTATCTGGTT groEL 749059 - 747428 - | chaperonin GroEL TERM 594 748510 - 748520 + g 76 -5.4 -4.63932 | overlap 748505 CCTCGGTCTCGGTCT CAAG GCC CTTG TTTTCTTCGACGGTG groES 749401 - 749090 - | chaperonin, 10 kDa degP 750533 - 749679 - | protease DO-like, putative htpX 751885 - 751007 - | heat shock protein, putative TERM 595 751455 - 751411 - G 81 -8.4 -4.63218 | gap 1, opp_overlap 751430, overlap 751413 CGCCGCCGAAGAAAA CGGCGAAGTTGGCGAGCAGCG ACAC CGC-GCCCGCCAGCGTAGCGG TGATCGTCATTGTGA TERM 596 752170 - 752143 - R 100 -14.1 -5.13527 | opp_overlap 752161 AACCAAGAAACAAAA GAGCCCGACGG TTTTGT CCGCCGGGCCC TCGACATCGGCGGCA TERM 597 752161 - 752190 + r 80 -9.1 -4.15044 | opp_overlap 752143, overlap 752179 CCCGACGGTTTTGTC CGCCGGGCCCTCG ACAT CGGCGGCATGGCG TTTATTCGCCAGCCG RD1_0776 752365 - 752192 - | hypothetical protein RD1_0777 752655 - 752410 - | hypothetical protein TERM 598 752613 - 752603 - G 71 -8.2 -4.00407 | opp_overlap 752604, overlap 752604 ACCGAAAAAGCGAAA GCGG GTG CCGC CAACAGAGCGGCAAC RD1_0778 752986 - 752732 - | hypothetical protein TERM 599 752941 - 752930 - G 84 -5.8 -5.00616 | CGTGGCCGCAAAAAA GGTC TTGG GACC GAATGCCTCAATGAG TERM 600 753761 - 753734 - R 100 -14.2 -4.83615 | opp_overlap 753738, overlap 753738 CACGTCGGATAAAAA GAAACCGGCCAA AAAA TGGGCCGGTTTC AGGTTTGGGGCTTGC TERM 601 753757 - 753738 - R 100 -9.2 -4.96501 | opp_overlap 753738, overlap 753734 TCGGATAAAAAGAAA CCGGCCAA AAAA TGGGCCGG TTTCAGGTTTGGGGC TERM 602 753738 - 753757 + r 70 -9.2 -3.71649 | opp_overlap 753734 753738 TCGGATAAAAAGAAA CCGGCCAA AAAA TGGGCCGG TTTCAGGTTTGGGGC RD1_0779 755007 - 753820 - | hypothetical protein TERM 603 754272 - 754302 + g 85 -2.5 -5.42131 | opp_overlap 754272, overlap 754274 ATCGTAATGTCAACA TGCCGGCCG AAGCGGTGACAAC CGGCCGGGA TTTTTTCTGTAGTTG TERM 604 754950 - 754901 - G 75 -2.9 -4.89393 | gap 1, overlap 754905 GAAAGTTGAGAAAAA CTGAGC-TCAGCTTCTCGTTCG CCGGGAC CAAACGAGAGGATGATGCCAAG GTTTTGGACGATTTG TERM 605 755252 - 755239 - R 91 -2.3 -5.84381 | opp_overlap 755239 TGACCAACAAAAAAA GCCGA TCCG TAGGC GTTTCATCGATCAAC RD1_0782 756419 - 756285 - | hypothetical protein TERM 606 756605 - 756589 - R 71 -7.9 -3.93556 | overlap 756590 ACTGAGGCAACCAAA TCGCTGC TGT GCAGCGC ATGTCACCAGACCTG TERM 607 756604 - 756590 - R 71 -11.4 -2.95652 | overlap 756589 CTGAGGCAACCAAAT CGCTGC TGT GCAGCG CATGTCACCAGACCT RD1_0783 758791 - 757046 - | sulfate transporter, permease protein, putative TERM 608 758838 - 758793 - R 70 -8.9 -3.64822 | opp_overlap 758800, overlap 758826 ATCGTTCTATCCAAA TTTGGCAGGTGGGCTCATCTG TTCG CATAAGGACCCACCCGCCAGA GGCGCGCTGCAGGTC RD1_0784 760563 - 758884 - | hypothetical protein RD1_0785 761456 - 760575 - | metallo-beta-lactamase family protein RD1_0786 761915 - 761487 - | hypothetical protein RD1_0787 762348 - 761917 - | YeeE/YedE domain-containing protein RD1_0788 762565 - 762353 - | hypothetical protein TERM 609 762486 - 762474 - G 80 -10.5 -4.07687 | AGCGCCCCGTCAAAA GCGGG CAG CCCGC TGAAAAAGGCAAGGT RD1_0789 763320 - 762658 - | cyclic nucleotide-binding protein, putative RD1_0790 763787 - 763317 - | hypothetical protein RD1_0792 764583 - 765014 + | hypothetical protein TERM 610 765061 - 765028 - f 100 -9.5 -4.93316 | opp_overlap 765027 765026 765030, overlap 765030 GAACAATATGAAAAA CACGGGCTATGGCGG GGCA CTGCCATAGTCCGTC ACTTTGCAGGATTGA TERM 611 765030 - 765059 + F 89 -16.5 -2.64651 | opp_overlap 765030 765028, overlap 765027 765026 ACAATATGAAAAACA CGGGCTATGGCGG GGCA CTGCCATAGTCCG TCACTTTGCAGGATT TERM 612 765059 - 765030 - f 90 -12.1 -4.06487 | opp_overlap 765027 765026 765030, overlap 765028 ACAATATGAAAAACA CGGGCTATGGCGG GGCA CTGCCATAGTCCG TCACTTTGCAGGATT cydA 765086 - 766498 + | cytochrome oxidase subunit II, putative cydB 766511 - 767512 + | cytochrome oxidase, subunit II, putative TERM 613 767763 - 767706 - T 81 -6.6 -4.72272 | gap 2, opp_overlap 767719 767725, overlap 767710 767717 767719 CCGGCGTATCAAAAA TGTATCAAAAACGCGAAAACCGCTAAGC CATT GCTCAGTGGTTTTT-CGTTTCCGAT-CA ATCTGTGGGGAGTCA TERM 614 767753 - 767717 - T 76 -5.2 -4.79667 | gap 1, opp_overlap 767719 767725, overlap 767710 767706 767719 AAAATGTATCAAAAA CGCGAAAACCGCTAAGC CATT GCTCAGTGGTTTTT-CG TTTCCGATCAATCTG TERM 615 767719 - 767753 + T 70 -8.7 -3.61654 | gap 1, opp_overlap 767717 767710 767706 767719, overlap 767725 AATGTATCAAAAACG CGAAA-ACCGCTAAGC CATT GCTCAGTGGTTTTTCG TTTCCGATCAATCTG TERM 616 767725 - 767746 + T 86 -6.5 -4.99134 | opp_overlap 767717 767719 767710 767706, overlap 767719 TCAAAAACGCGAAAA CCGCTAAGC CATT GCTCAGTGG TTTTTCGTTTCCGAT RD1_0795 769844 - 768003 - | hypothetical protein TERM 617 769842 - 769858 + g 83 -4.3 -5.0916 | opp_overlap 769845, overlap 769845 AAGAGCGAGACGCAT CAAGCTG GAC CGGCTAG TTTTTCTGTTGGAAG RD1_0796 770821 - 769841 - | transposition protein, putative RD1_0797 772985 - 770814 - | transposase, putative TERM 618 772235 - 772215 - G 79 -7.6 -4.55118 | GAATGTCACATAAAA CGGATCCA TGGCT TGAATCCG TCTGACGATTGTGCT TERM 619 773711 - 773752 + H 74 -4.3 -4.71426 | opp_overlap 773716 GCTTGCAATGGTGCA GTGAAGCACCCCACCAGCT ACGA AGCTTGCAGGATGCTTGAC TTTTGTTGCTGAAAG TERM 620 773812 - 773843 + H 75 -12.3 -2.9583 | overlap 773816 ATGGCCCGCTTTTTG GGAAGGCCCGGCG CTCCAA CGCTGGGTCTTTC TGCTTTGAGTGGTTG TERM 621 773816 - 773839 + H 83 -9.5 -4.14725 | overlap 773812 CCCGCTTTTTGGGAA GGCCCGGCG CTCCAA CGCTGGGTC TTTCTGCTTTGAGTG RD1_0798 774545 - 775651 + | hypothetical protein TERM 622 776168 - 776156 - g 70 -10.5 -3.53224 | TACGGTCCTCGGAAA GCGCG ACA CGCGC GCAGGTGATGTCGCT RD1_0799 775648 - 777111 + | hypothetical protein TERM 623 777293 - 777279 - g 82 -12.8 -3.59979 | opp_overlap 777279 GCGCTCTACGGCAAA CGCGCC CTC GGCGCG CGTGTTGGGCAGGCC TERM 624 777546 - 777561 + G 89 -4.6 -5.2853 | GAAGACATCATTCCA GCTGGG GTGT CGCAGC TTTTCTTTTTCGATG RD1_0800 777108 - 779060 + | hypothetical protein RD1_0801 779050 - 779424 + | hypothetical protein nifS 779429 - 780592 + | cysteine desulfurase TERM 625 780821 - 780800 - g 78 -2.3 -5.06816 | gap 1, overlap 780814 ATTCGCGAACAAAAA CTGC-TTGTT AAA AACTACGCAG TAGAACATGAACTTG TERM 626 780824 - 780814 - g 74 -5.4 -4.56775 | overlap 780800 ACTGCTTGTTAAAAA CTAC GCA GTAG AACATGAACTTGTAG TERM 627 781401 - 781378 - g 72 -2.4 -4.84761 | ATACGCCGATAAAAA GCGAAGCT TGATGCTG AACCTCGC TATTCGACGCAATCT TERM 628 782512 - 782480 - g 75 -2.7 -4.9041 | gap 1, opp_overlap 782496 782499 ATCACAAAAAAAGAA GAGCTGACGACCGA TCGAAT TCTGTGGTC-GCTC CAGAATCCTGTTGAG RD1_0803 780659 - 782659 + | hypothetical protein rpoD 782807 - 785824 + | RNA polymerase sigma factor, putative TERM 629 786328 - 786342 + G 70 -4.2 -4.5442 | GCCGGCACCAATTGG GAAGCT TTC AGCGTC TTTTGTGATTGGAAA TERM 630 787323 - 787305 - g 71 -8.9 -3.76641 | AGGCGAACAGCTAAA CCGTTTG TTGAT CAAACGG GCACGCCTGATCGGA RD1_0805 785824 - 787908 + | helicase domain-containing protein TERM 631 789896 - 789885 - gf 70 -4.4 -4.48792 | opp_overlap 789891 ACAAGGCAAAAACAA CCTT TTTC AAGG GCGGTGTTTATCCCT RD1_0806 788135 - 790186 + | hypothetical protein TERM 632 790256 - 790269 + GF 70 -3.1 -4.60041 | CATTTTTCCGACCTT CAAGG ACAC TCTTG TTTTTGCGGCTGCAT RD1_0807 790140 - 790607 + | hypothetical protein RD1_0808 791272 - 792504 + | hypothetical protein RD1_0809 794007 - 793399 - | hypothetical protein RD1_0810 794877 - 795125 + | DNA-binding protein RD1_0811 795272 - 795388 + | hypothetical protein TERM 633 795848 - 795858 + G 71 -6.8 -4.18018 | opp_overlap 795848 GCACGGGCTGGGAAA CGAC TTT GTCG TTTTGGATGCGCGCA TERM 634 796250 - 796268 + G 74 -3.9 -4.7497 | gap 1, overlap 796250 CACCGCAACTGGCAT GG-GCAAT CCGC ATTGCACC TTTTTCGTCGATGAC dapF 795783 - 796625 + | diaminopimelate epimerase TERM 635 797339 - 797329 - g 71 -6.8 -4.26076 | overlap 797308 CGAGGTTGACGAAAA CCTG ATG CAGG CGATTGCCACCGAGC RD1_0814 796622 - 797875 + | MiaB-like tRNA modifying enzyme RD1_0815 798098 - 798457 + | hypothetical protein RD1_0816 798543 - 799160 + | Crp/FNR family transcriptional regulator TERM 636 799490 - 799512 + T 76 -12.1 -3.04144 | opp_overlap 799485 799496 CAAAAGTAAATTGGG GGGAAACCA TCGGT TGGTTTCCC TCTTACCAATCGAAG RD1_0817 800385 - 799639 - | trypsin domain-containing protein TERM 637 799728 - 799768 + g 70 -3.2 -4.63218 | overlap 799700 799699 799730 CCAGTGCGGTTCCCT CGGGT-TCTCGGCGCGCGAC GAT GGTGCCCGCC-AGATACCAG TTTTGTTCCAGCCGA RD1_0818 801269 - 800556 - | aspartate racemase, TERM 638 801072 - 801096 + g 89 -11.3 -4.1899 | opp_overlap 801074, overlap 801074 GGCCATTTGCGCCAG AACCGGACCCG GGT CGGGACCGGTC TTTTCAATGACATGA TERM 639 801074 - 801094 + g 88 -13.9 -3.69483 | opp_overlap 801074, overlap 801072 CCATTTGCGCCAGAA CCGGACCCG GGT CGGGACCGG TCTTTTCAATGACAT TERM 640 801094 - 801074 - G 81 -13.9 -3.29144 | opp_overlap 801074 801072 CCATTTGCGCCAGAA CCGGACCCG GGT CGGGACCGG TCTTTTCAATGACAT RD1_0819 802295 - 801282 - | D-cysteine desulfhydrase TERM 641 802375 - 802391 + H 74 -10.9 -3.53012 | opp_overlap 802357 802356 802365 AATTACCCCCTGTAA CTTGCGA AAT TCGCAAG TTTGGGGCGGGAGGC RD1_0820 802412 - 803389 + | LysR family transcriptional regulator pta 804707 - 803709 - | phosphate acetyltransferase RD1_0823 805112 - 804753 - | hypothetical protein RD1_0824 806172 - 805132 - | hypothetical protein TERM 642 805928 - 805943 + g 81 -5.4 -4.8048 | gap 1 CCGAGCAGGGCGACG CCGATGC GCA GCA-CGG TTTTTGATGTAAAGG xsc 808070 - 806289 - | sulfoacetaldehyde acetyltransferase TERM 643 807989 - 808023 + g 72 -13.6 -2.64155 | opp_overlap 808001 808008, overlap 807986 AGATCGGCATCATGG CGGAACCGATAATGCC AAA GGCATTGTCGATACCG TGCATTTGCAGAACC tauD 809489 - 808095 - | taurine dehydrogenase TERM 644 809381 - 809436 + g 81 -16.3 -2.85297 | gap 2, opp_overlap 809386 809388, overlap 809390 809427 809429 TCCCCGCCGTACCAA TCCAATAGGTCGGTGCGTGGTCCCGGT TGTG ACCGGGACC-CGCGTCGA-CGATAGGA TCGTATTTGGGATCG TERM 645 809430 - 809388 - G 78 -14.1 -3.16676 | gap 1, opp_overlap 809381 809390 809427 809429, overlap 809386 CGTACCAATCCAATA GGTCGGTGCGTGGTCCCGGT TGTG ACCGGGACC-CGCGTCGACG ATAGGATCGTATTTG tauX 809903 - 809517 - | taurine dehydrogenase small RD1_0830 810431 - 809928 - | universal stress family protein, putative TERM 646 810191 - 810228 + g 71 -7.7 -4.12942 | overlap 810224 810225 AGAAGGCCCTTTGAC GTTCCGCCATGATCG CCTTGGCA TGATCGTGGCGGGCC TTTTCGGCCGTTTCG tauM 811796 - 810456 - | C4-dicarboxylate transport system, large permease protein, putative TERM 647 811808 - 811822 + r 74 -3.4 -4.83615 | CCATTATTTTTTCTC CCCGTC TGG GCTGGG TTTTTCTGCGGCATC tauL 812362 - 811796 - | C4-dicarboxylate transport system, small permease protein, putative TERM 648 812384 - 812407 + r 76 -12.5 -2.72211 | opp_overlap 812354 812389, overlap 812383 812379 812386 812389 CTCCCACCCGGGTGA GACAAGCGC CCGAAA GCGCTTGTC GTTCGTTTGCGGTTC tauK 813442 - 812426 - | periplasmic substrate-binding transport protein, putative TERM 649 813665 - 813652 - g 70 -4.5 -4.56775 | ACCGCGCTTCAAAAA GGCCT CTGC AGACC CAGATAAGAGAGGCC TERM 650 814196 - 814182 - g 91 -4.2 -5.48303 | overlap 814184 ATAACCGCAAAAAAA GAGCAG GTT CTGATC ACCGTTGGCGCTCAG RD1_0834 813597 - 815060 + | transcriptional regulator, putative RD1_0836 815119 - 815844 + | hypothetical protein RD1_0837 815841 - 815963 + | hypothetical protein TERM 651 816130 - 816073 - T 80 -8.8 -4.11216 | gap 3, opp_overlap 816077 816079, overlap 816079 GCGTCATGCGCAAAA CCTAA-ATCACGCAACGCTGCCTGAAATC AAT GATTTCA-AC-GCGTCGCGTGATATTTGA TGTTTCAGGTATGTC TERM 652 816077 - 816125 + T 71 -7.6 -4.00934 | gap 2, opp_overlap 816073 816079, overlap 816079 CATGCGCAAAACCTA AATCACGCAACGCTGCCTGAAATC AAT GATTTCAA-C-GCGTCGCGTGATA TTTGATGTTTCAGGT TERM 653 816079 - 816123 + T 74 -10.2 -3.5913 | gap 2, opp_overlap 816073 816079, overlap 816077 TGCGCAAAACCTAAA TCACGCAACGCTGCCTGAAATC AAT GATTTCAA-C-GCGTCGCGTGA TATTTGATGTTTCAG TERM 654 816123 - 816079 - T 100 -14.6 -3.92659 | gap 2, opp_overlap 816079 816077, overlap 816073 TGCGCAAAACCTAAA TCACGCAACGCTGCCTGAAATC AAT GATTTCA-AC-GCGTCGCGTGA TATTTGATGTTTCAG RD1_0838 816758 - 816180 - | transcription regulator, putative gabT 816875 - 818170 + | 4-aminobutyrate transaminase cpnE 818225 - 819661 + | 5-oxovalerate dehydrogenase, putative buk 819667 - 820767 + | butyrate kinase ptb 820764 - 821681 + | phosphate butyryltransferase, putative RD1_0843 822822 - 821782 - | hypothetical protein TERM 655 823206 - 823220 + G 84 -5.7 -4.87665 | GAAATCTGGCTGCGG CGCAA TGGAT TTGCG TTTTTCTGGGTCAGA RD1_0844 822945 - 823292 + | hypothetical protein RD1_0845 824756 - 823302 - | biotin carboxylase-like protein TERM 656 825160 - 825135 - g 74 -3.3 -4.76274 | gap 1, opp_overlap 825143, overlap 825136 GAAATGAACACAAAA TCAATTACC-CG GCG CGCGGCAATTGC TGCGGTGTCCGGTGT RD1_0846 825123 - 826145 + | periplasmic solute-binding protein, putative TERM 657 826180 - 826208 + G 73 -13.2 -2.80816 | opp_overlap 826180 CCTTCGGGTTCAAGA TGGCCTGTCCGA GTTTG TCGGGCAGGTCA TCTGCTGGCTCACCC TERM 658 826547 - 826530 - g 70 -4.1 -4.6759 | gap 1, overlap 826534 826544 AATACTCCAACAAAA GCATGTGG CAA CCAC-CGC TTTATCCGATCAAGA RD1_0847 826145 - 826726 + | TRAP dicarboxylate transporter, DctQ subunit, putative TERM 659 826865 - 826909 + G 70 -10.7 -3.54424 | CGCTGGGCGCGCCAC TCGCCTGGGCACTGACGATCT GCG GGATTGGCAGTGCATACGCGA TTTACGGCGATGGGG RD1_0848 826786 - 828099 + | TRAP dicarboxylate transporter, DctM subunit, putative RD1_0849 828474 - 828118 - | hypothetical protein RD1_0850 828643 - 829530 + | hydrolase, putative TERM 660 829957 - 829969 + G 73 -9.1 -3.9461 | GAGACCTATTGGGGC GACCG CAG CGGTC TTCTTGTTGACCCGA RD1_0851 829624 - 830187 + | glyoxalase family protein, putative TERM 661 830309 - 830339 + T 80 -12 -3.36823 | overlap 830304 830338 CTGCCATCCGGTATT GGTCCAAAACAC TTGAACC GTGTTTTGGGCC TTCGCTTTTGCAAGG RD1_0853 831143 - 830424 - | GntR family transcriptional regulator TERM 662 830969 - 830957 - G 87 -10.5 -4.39386 | opp_overlap 830956 830956 830957 TGGAAAGCAGTAAAA GCGCG CGG CGCGC ATGCATTCTGCCCAC RD1_0854 831377 - 832564 + | branched-chain amino acid ABC transporter, periplasmic substrate-binding protein TERM 663 832610 - 832581 - f 79 -12.9 -2.89971 | gap 1, overlap 832576 CCACTACACACGACA TGCTGCTTCCG-GC ATC GCTCGGAAGCAGCT CCTGCCCGACGGATA RD1_0855 832657 - 833526 + | branched-chain amino acid ABC transporter, permease protein RD1_0856 833534 - 834511 + | branched-chain amino acid ABC transporter, permease protein TERM 664 834556 - 834578 + G 71 -9.2 -3.70902 | opp_overlap 834550 834549 AAGAAATACGGCGGG CTGATCGC CAACAAT GCGATCAG TTTCGATGTGGCGGA RD1_0858 834508 - 835290 + | branched-chain amino acid ABC transporter, ATP-binding protein RD1_0859 835294 - 836016 + | branched-chain amino acid ABC transporter, ATP-binding protein TERM 665 836445 - 836425 - g 74 -5.4 -4.56597 | gap 1, opp_overlap 836397, overlap 836427 GGGTTGGCGCAAAAA TG-CGCACG CGTT CGCGCGACA GATATTCCCGTTTTG hyuE 836023 - 836706 + | hydantoin racemase RD1_0863 838363 - 837137 - | hypothetical protein TERM 666 837730 - 837704 - G 73 -5.1 -4.61527 | overlap 837694 837725 AAAATCGTCGAAAAA CGCGCGATT GGCTTCAAA AAGCGCGCG CAACCCGGCGTTCTG TERM 667 838009 - 837970 - G 78 -6.4 -4.63218 | gap 1, overlap 837954 CGTCTTCCAACAAAA CGGGCGCACCGACATCAAG AAC CTTGATGGCCATGC-CACG ACTGCCGTGGTTCAG RD1_0864 838755 - 839891 + | ribose ABC transporter, periplasmic binding component, putative RD1_0865 839976 - 841535 + | sugar ABC transporter, ATP-binding protein, putative TERM 668 841568 - 841604 + G 70 -3.6 -4.6008 | gap 1, overlap 841569 841570 GATCTGGCCATCATC CTGCGA-CAGCGTGCGC CTTT GCTCACGGTGATCGCGA TTTTCCTTCTGTTTT TERM 669 842253 - 842265 + G 71 -5.5 -4.41616 | overlap 842254 CCAAGATTGCGGCCT TCACC TTG GGTGG TTTCTTTGCGGGGAT RD1_0866 841532 - 842587 + | ribose ABC transporter, permease protein, putative TERM 670 842638 - 842626 - g 100 -9.1 -4.78237 | CACTTCACAAGAAAA GAGCC GCT GGCTC TCGCCTGAAAACAAA rbsC 842594 - 843574 + | ribose ABC transporter, permease protein TERM 671 844220 - 844254 + G 73 -4.9 -4.58395 | gap 1, overlap 844223 844235 CATTCGGGTTTTCGA CGTTGCCG-CCGACGG CAGC CTGTCGGGTGGCGCTG TTTTTGCGGAATCGA gnl 843588 - 844505 + | gluconolactonase, putative RD1_0869 846414 - 844513 - | type I secretion target repeat-containing protein TERM 672 845582 - 845564 - G 74 -6.7 -4.37886 | gap 1, overlap 845566 CCACCGGTCAGAAAA TCG-CGGC CTGC GCCGCCGA TGAGAATGTCGCTTC TERM 673 847071 - 847103 + H 75 -11.1 -3.40522 | opp_overlap 847070 CGTCGTTCGCAACAG CCCCGGCCCGCAGGA CGC TGCCGCCGGCTGGGG TTCTGATCGAAAACT TERM 674 847475 - 847461 - H 76 -10 -3.81755 | opp_overlap 847460 847459, overlap 847456 847458 AGCGCTCAAAGACAA CGGATG TCG CATCCG GATTCGTGGTGTCAT RD1_0870 848030 - 848956 + | hypothetical protein moxR 849044 - 850000 + | MoxR-like ATPase RD1_0873 849997 - 850902 + | hypothetical protein RD1_0874 850899 - 851270 + | hypothetical protein RD1_0875 851263 - 852225 + | hypothetical protein TERM 675 852383 - 852431 + G 72 -13.7 -2.55668 | opp_overlap 852392 852395, overlap 852382 852394 GATGGCGCTGGACCG GGTGGACAACAGCGCCAGCCGCG CGC CGCTTCTGGCGATGCTGTCCGCG GTTGGTGTGACGCTG TERM 676 852422 - 852392 - g 72 -11 -3.29144 | opp_overlap 852383 852382 852394, overlap 852395 GGACCGGGTGGACAA CAGCGCCAGCCGCG CGC CGCTTCTGGCGATG CTGTCCGCGGTTGGT RD1_0876 852222 - 853121 + | hypothetical protein TERM 677 853223 - 853233 + G 83 -4.6 -5.1101 | overlap 853221 GCAGGGATGCCGGGG CTGG CGG CCGG TTTTTTCGATGATCC TERM 678 853625 - 853640 + G 72 -2.4 -4.77438 | overlap 853627 GAAAGCCGCGGGCAA CTTGGC GTGC GCCGTG TTTTTGATGATAAAT TERM 679 853769 - 853742 - g 84 -9.8 -4.21607 | gap 1, opp_overlap 853767 GCGATGGAACACAAA CGGCGCGTCAAGC TGG GCCTGTCGC-CCG CCGCGCCGGAGGATC RD1_0877 853202 - 853792 + | hypothetical protein RD1_0878 853789 - 854979 + | hypothetical protein RD1_0879 855150 - 855869 + | LuxR family transcriptional regulator TERM 680 856152 - 856178 + G 79 -9.4 -4.25104 | overlap 856143 TGCTGCTGGCCTTTC CCAAGGCGCA TTTTCGC TGCGCCTCGG TTTTGATGGAGCCGC TERM 681 856691 - 856675 - g 73 -10.1 -3.5812 | overlap 856673 GATCGAGTACAAAGA CACGCAC TAC GTGCGCG CGATATCGGATGCGG RD1_0880 855881 - 857038 + | hypothetical protein TERM 682 858136 - 858121 - g 71 -6.8 -4.17048 | gap 1, opp_overlap 858121 858134, overlap 858103 CGCGTGGCAAAAGAA CGCGCGG AGG CCGC-CG TGTCATCAAAAACAC RD1_0881 857107 - 859299 + | histidine kinase, putative RD1_0882 859333 - 859992 + | hypothetical protein RD1_0883 859989 - 860336 + | hypothetical protein TERM 683 860363 - 860389 + T 100 -16.6 -5.4492 | opp_overlap 860363 GTTTCTCATGAAAAA GCGCCGCAGG GATCAAA CCTGCGGCGC TTTTTTGTGTGTATC TERM 684 860389 - 860363 - T 100 -16.6 -4.72272 | opp_overlap 860363 GTTTCTCATGAAAAA GCGCCGCAGG GATCAAA CCTGCGGCGC TTTTTTGTGTGTATC RD1_0884 861228 - 860416 - | hypothetical protein TERM 685 861542 - 861571 + G 93 -7.7 -4.89852 | opp_overlap 861542 AGCCGATGGGCGAAA CGCTGAGCATGAC AGAG GTCGCGCCCGGCG TTTTTGTCCATGTCG TERM 686 862319 - 862333 + G 78 -7 -4.59109 | opp_overlap 862318 TAGCGCAGAGCGAAC GCAGCC TGT GGCAGC TTTTTGACGCCTATA RD1_0885 861352 - 862395 + | hypothetical protein RD1_0886 863029 - 862406 - | hypothetical protein TERM 687 863007 - 862958 - G 95 -12 -4.46212 | gap 1, overlap 862960 TGTTGGATCAGAAAA GTCTGCCGCCTGCGCAGGT-GCG CCCAC CGCGACCAGCGCCAGCGTCAGGC AAAGAGGTTTGATCA TERM 688 863005 - 862960 - G 72 -13.2 -2.56122 | gap 1, overlap 862958 TTGGATCAGAAAAGT CTGCCGCCTGCGCAGGT-GCG CCCAC CGCGACCAGCGCCAGCGTCAG GCAAAGAGGTTTGAT flhA 863195 - 864307 + | glutathione-dependent formaldehyde dehydrogenase TERM 689 864601 - 864618 + G 76 -6.9 -4.55287 | GACGAGGCCTATGAC CTTGGCC AGGG GGCCGGG TTTTATGTCAATGCG RD1_0888 864316 - 865140 + | S-formylglutathione hydrolase, putative RD1_0889 865176 - 865577 + | cytochrome c family protein TERM 690 865622 - 865588 - f 76 -12.9 -2.72147 | overlap 865587 865583 CGTAAGACAACGAAT TTCCTGTGGCGTGGG ACAGA CCTACTCCACAGGAA TAACCCGGTACCCTG TERM 691 866867 - 866850 - g 71 -9.1 -3.84719 | opp_overlap 866850 ATCCCGAAAGCGAAA CCTACGG TCGT CCGCAGG TTGTGGCTCAGTACT moxF 865703 - 867505 + | methanol dehydrogenase, large subunit TERM 692 867556 - 867533 - f 88 -13.8 -3.41693 | TCCAGCATGAACGAA TGGCGCGGCC GAAC GGTCGCGCCA CTTCAAAAACAAACG cycB 867614 - 868123 + | cytochrome c553I TERM 693 868142 - 868128 - g 70 -4.2 -4.57569 | opp_overlap 868130, overlap 868130 GCATGGGCTGAAAAA TACCAG CGC CTGGTT GTGACCCTTCTCCTT TERM 694 868333 - 868355 + G 78 -9.8 -3.85698 | opp_overlap 868333 TTCCCGTGCAGTATA CCTGGTTTCC GAT GGCAACCGGG TTTGTGCGCAACACA RD1_0892 868107 - 868952 + | putative methanol oxidation protein TERM 695 869180 - 869165 - g 73 -10.4 -3.57561 | overlap 869173 CCGCAACCGCCCAAA CCGGCA AACC TGCCGG AGGGAACCATCTGGC RD1_0893 868949 - 869503 + | hypothetical protein RD1_0894 870316 - 869504 - | hypothetical protein RD1_0895 871254 - 870313 - | hypothetical protein TERM 696 870733 - 870722 - G 71 -7.2 -4.14511 | AAGCGCAGGCCAAAA GGGC GGGT GCCC ACATCCACGCGGTGC TERM 697 871011 - 871037 + g 74 -7.2 -4.34402 | overlap 871013 GCGCAAGGACTTTGC CCGTCAGCCGAT CAT GTCGCCTGACCG TTTTGCTGTCCGCGG RD1_0896 871783 - 871238 - | hypothetical protein RD1_0897 872265 - 871783 - | hypothetical protein RD1_0898 872428 - 873600 + | hypothetical protein RD1_0899 873613 - 874584 + | hypothetical protein RD1_0900 874616 - 875053 + | hypothetical protein RD1_0901 875071 - 875322 + | hypothetical protein TERM 698 875337 - 875354 + G 87 -9.8 -4.4267 | overlap 875327 GGTTTCGCCTGATCG GGGCGC TTGTCT GCGCCC TTTTCGGTTTTGCAG RD1_0902 875312 - 876289 + | ABC transporter, substrate-binding protein, putative ssuC 876273 - 877046 + | aliphatic sulfonates transport permease protein, putative RD1_0904 877043 - 877642 + | ABC transporter, putative RD1_0905 878827 - 877733 - | hypothetical protein TERM 699 877970 - 877951 - G 73 -10 -3.57908 | gap 1 CATCAAAGATCAGAA CGCGCCCAC CGC GTGGG-GCG GATGCTGCAAAACCT RD1_0906 879798 - 878830 - | hypothetical protein TERM 700 879433 - 879405 - G 74 -5.9 -4.56597 | overlap 879406 CCTGTGGTTCAAAAA GCAGGCGTTCAAG AGC CGTGAACCCCTGT GCGGCGACGGAAACT RD1_0907 881326 - 879803 - | hypothetical protein RD1_0908 881372 - 881812 + | hypothetical protein RD1_0909 881931 - 882401 + | hypothetical protein TERM 701 882460 - 882498 + T 82 -5.3 -5.06414 | opp_overlap 882460 GATGGCACCCAAAAA GGTCAGGCCACGTC-CCGT ACT GCGGCGATC-GGCTTGACC TTTTTCTTGAGGCAC RD1_0910 882719 - 882462 - | hypothetical protein TERM 702 882582 - 882605 + g 75 -8.2 -4.26953 | opp_overlap 882575 ACCGACAAGCATCTC GACAAATGCC TCGC GGTGTTTGTC TTTCTTGAGTTGCTT RD1_0911 884043 - 882817 - | putative lipoprotein RD1_0912 884551 - 884072 - | hypothetical protein RD1_0913 884721 - 884548 - | hypothetical protein RD1_0914 884870 - 884718 - | hypothetical protein TERM 703 885621 - 885648 + G 70 -10.5 -3.45023 | gap 1 GTGTCTCTGCCCATG GCGCGCCCCGCC ATCGC GGCGGG-CACGC TTCTGGTGGTGATGG RD1_0915 885057 - 886685 + | ferric iron ABC transporter, permease protein TERM 704 886696 - 886717 + T 95 -14.4 -3.22298 | opp_overlap 886696 CCTGAAACGCGAAAA GGCGCGCC ACGAGG GGCGCGCC TTGATGCTCGATGGG TERM 705 886717 - 886696 - T 100 -14.4 -4.24002 | opp_overlap 886696 CCTGAAACGCGAAAA GGCGCGCC ACGAGG GGCGCGCC TTGATGCTCGATGGG RD1_0916 887753 - 886740 - | ferric iron ABC transporter, periplasmic ferric iron-binding protein RD1_0917 888830 - 887949 - | permease family TERM 706 888366 - 888386 + g 71 -7.5 -4.18018 | opp_overlap 888355 AAAAGCCATGTCATA GCGGGTC GCCTTCA GGCCCGC TTTTGCCTCGCGCCA zntR 889215 - 889652 + | HTH-type transcriptional regulator ZntR RD1_0919 890717 - 889782 - | putative zinc/manganese/iron ABC transporter, permease protein RD1_0920 891934 - 890717 - | putative zinc/manganese/iron ABC transporter, permease protein TERM 707 891788 - 891755 - G 76 -8.8 -4.0044 | gap 1 AACCATGACGATAAA GGCCAGTGCGACACC GGGCA GG-GTCGCATGGGCC GTGGCATCCGAGACC troB 892764 - 891931 - | zinc ABC transporter, ATP-binding protein TERM 708 892614 - 892632 + g 73 -4.5 -4.59773 | CCGGGAAGTCGGCAT CCACCGA GAAGA TCGCTGG TTTTTCACCGTAAGA RD1_0922 893717 - 892761 - | zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein RD1_0923 893899 - 894099 + | hypothetical protein amt-2 894348 - 895721 + | putative ammonium transporter TERM 709 895770 - 895744 - f 71 -10.7 -3.30006 | opp_overlap 895745, overlap 895745 ACGAAGTGATAGGAA GGGGCCCCGGC GTTTT GTCGGGGCCCT TTGTCATTCAGGGTC TERM 710 895769 - 895745 - f 81 -14.2 -2.57522 | opp_overlap 895745, overlap 895744 CGAAGTGATAGGAAG GGGCCCCGGC GTTTT GTCGGGGCCC TTTGTCATTCAGGGT TERM 711 895745 - 895769 + F 100 -17.1 -4.05714 | opp_overlap 895745 895744 CGAAGTGATAGGAAG GGGCCCCGGCG TTT TGTCGGGGCCC TTTGTCATTCAGGGT gntR 895831 - 896565 + | GntR family transcriptional regulator RD1_0926 896756 - 896652 - | hypothetical protein gabD 898342 - 896864 - | succinate-semialdehyde dehydrogenase TERM 712 897263 - 897295 + g 70 -4.8 -4.57073 | CAGCACAGCCCCCCC GTTCGAGACCACGT CGTTC ATGTGGTCCTGCAC TTTTTCAACGGCCTC TERM 713 898498 - 898510 + G 76 -10.5 -3.72893 | ACCGCGCTGGTCAGA GGCGG CCG CCGCC TTTCGTGAGGCGATG TERM 714 899025 - 899069 + G 77 -3.4 -4.91109 | gap 1 TTTTGCAACCGCCCC CCGACACGCCGCTGTGCATCT GGGT GGGGGCACAGGAGCGTC-CGG TTTTTCTGCTGCAAG RD1_0928 898424 - 899206 + | hypothetical protein cln 899332 - 900555 + | creatinase TERM 715 900577 - 900598 + F 100 -17.3 -5.26119 | opp_overlap 900579 CGCGATCTGCCAATT GACGCCCGG TCCG CCGGGCGTC TTTTGTTTTTGGGCC TERM 716 900596 - 900579 - f 81 -14.1 -2.52896 | opp_overlap 900577 CGATCTGCCAATTGA CGCCCGG TCCG CCGGGCG TCTTTTGTTTTTGGG RD1_0930 900705 - 900968 + | hypothetical protein TERM 717 901456 - 901467 + G 70 -3.6 -4.70659 | AATGGGATCATTCTG GCCG TCCT TGGC TTTTTCGGTATCGCC RD1_0931 900979 - 901629 + | hypothetical protein RD1_0932 902020 - 901640 - | HIT-like protein, putative TERM 718 902124 - 902095 - H 80 -10.7 -3.77177 | AGGAACAGAGGGAAA CTGCGCAAACATG CCTA CATGTATGCGCCG ATCCGCCAATGCGAC smpB 902105 - 902767 + | SsrA-binding protein mst 902853 - 903707 + | 3-mercaptopyruvate sulfurtransferase tyrB 903707 - 904891 + | aromatic amino acid aminotransferase TERM 719 904883 - 904917 + T 77 -7.8 -4.25458 | gap 1 GCGATCGTGGATGTA GGGGTCTGACCTCGG CAAAAC CCG-GACCAGACCCC TTTGTTAGTGGCGTT TERM 720 905381 - 905408 + T 74 -11.2 -3.16191 | opp_overlap 905384, overlap 905384 GGTACAGGCACGAAA AAACCCGGGCGT TCGC ACGCCCGGGTCA TTGCTAACCCTCTGG TERM 721 905405 - 905384 - T 100 -17.3 -5.17353 | opp_overlap 905384 905381 ACAGGCACGAAAAAA CCCGGGCGT TCGC ACGCCCGGG TCATTGCTAACCCTC TERM 722 905384 - 905405 + T 91 -17.3 -2.78216 | opp_overlap 905384, overlap 905381 ACAGGCACGAAAAAA CCCGGGCGT TCGC ACGCCCGGG TCATTGCTAACCCTC RD1_0936 906781 - 905435 - | putative ammonium ABC transporter, permease component glnB 907147 - 906809 - | nitrogen regulatory protein P-II, putative TERM 723 907817 - 907805 - g 70 -3.3 -4.62069 | overlap 907806 GCCGCATCTGAAAAA CGCGA TTA TCGCC ACCGAGGACCGCCGC pbpC 907404 - 909590 + | 1A family penicillin-binding protein RD1_0939 910201 - 909602 - | toluene tolerance family protein, putative RD1_0940 910986 - 910216 - | VacJ-like lipoprotein, putative RD1_0941 911453 - 911911 + | endoribonuclease L-PSP family protein, putative TERM 724 912026 - 912013 - g 76 -5.9 -4.63218 | CGGGCGGCAATAAAA GCCGC AATC GCAGC CGGTTATGGGATAGA RD1_0942 911908 - 912672 + | putative glycerophosphoryl diester phosphodiesterase TERM 725 913451 - 913489 + G 76 -5.9 -4.59773 | gap 1, opp_overlap 913463 913464, overlap 913452 TTCTATCAGGATACC GGCGCGCG-CAAATGGGG CACC CCCTATCTGACCCGCGCG TTTTTCGACGTGGCG TERM 726 913529 - 913558 + G 72 -13.6 -2.52464 | opp_overlap 913527 913552, overlap 913551 913553 TTACGCAACGACATG GCGCTCGTTCTG GCAGAA CGGAACGGGCGC TGGGTTGCCGGCGCG RD1_0943 912722 - 913909 + | hypothetical protein TERM 727 913934 - 913954 + G 76 -9 -4.13945 | gap 1, opp_overlap 913934 913933 913931 TAAGCACCGAAACAC GCGGC-CCA TTGC TGGAGCCGC TTTTCGCCTCAGGCT pcd 913906 - 914202 + | pterin-4-alpha-carbinolamine dehydratase RD1_0945 914209 - 915054 + | hypothetical protein TERM 728 915095 - 915071 - T 100 -18.6 -3.76224 | opp_overlap 915071, overlap 915056 CCCGGATGCAGCAAA GCCCGGGCAC AGGGG GTGCCCGGGC TTTTTTCGTTTACAT TERM 729 915071 - 915095 + T 100 -18.6 -5.38497 | opp_overlap 915056 915071 CCCGGATGCAGCAAA GCCCGGGCAC AGGGG GTGCCCGGGC TTTTTTCGTTTACAT RD1_0946 915593 - 915105 - | anti-oxidant AhpCTSA family protein TERM 730 915863 - 915883 + G 71 -5.3 -4.3898 | ATGGCGCTTGAGCGT CTGTTCCTG CGG CCGGAGCGG TTTTATGCGGATAAT RD1_0947 915689 - 916897 + | pyridine nucleotide-disulphide oxidoreductase, putative RD1_0948 916894 - 917451 + | methyltransferase, putative map 918531 - 917647 - | methionine aminopeptidase, type I, putative sfsA 919292 - 918585 - | sugar fermentation stimulation protein TERM 731 919788 - 919802 + G 71 -7.8 -4.08216 | overlap 919782 ATGTCTATGTGATGG CCGGTG TGC CATCGG TTTTCCGGGCCATGG RD1_0951 919343 - 920068 + | molybdopterin binding domain-containing protein RD1_0952 920065 - 920805 + | acetyltransferase, putative RD1_0953 920798 - 921370 + | hypothetical protein TERM 732 921518 - 921532 + G 77 -11.4 -3.68619 | ATGATCTGCCCATCG CGCCGT TTG ACGGCG TTTCGGTCCCTTCCA TERM 733 922029 - 922041 + G 79 -9.1 -4.14392 | overlap 922027 CGGGACGTCGGATCT CGGAC CGG GTCCG TTTTCGGCCTTGAAG RD1_0954 921367 - 922326 + | OmpA family domain-containing protein RD1_0955 923283 - 922375 - | LysR family transcriptional regulator TERM 734 923950 - 923930 - g 76 -6.1 -4.65895 | opp_overlap 923930, overlap 923932 GCGGGCACGGAAAAA GAGATGACG GGG CATCATCAC CTGTTCGTTAACCGT RD1_0956 923735 - 924178 + | hypothetical protein fadH 926210 - 924183 - | 2,4-dienoyl-CoA reductase TERM 735 925064 - 925052 - Gf 74 -10.5 -3.53444 | TGATTGCGGTGGAAA GGCCC GCA GGGCC TGCGCCGACGATGGC RD1_0959 926428 - 926249 - | hypothetical protein TERM 736 926328 - 926339 + GgH 79 -7.2 -4.40358 | TCCTCGTCCCCTTTG GCCC GACC GGGC TTTTGTGCGATGGGT RD1_0958 926195 - 926371 + | hypothetical protein RD1_0960 926427 - 926909 + | hydrolase NUDIX family domain-containing protein RD1_0961 927502 - 926906 - | acetyltransferase RD1_0962 928491 - 927505 - | PfkB family kinase, putative nth 929234 - 928488 - | endonuclease III TERM 737 929917 - 929947 + G 70 -4.7 -4.4715 | gap 1 TTGTTTTTGATTGGT GCGCCGTTCCAGAT AAAA GTCTGGGAAG-CGC TTTTGTCCATTCCGA TERM 738 930010 - 930028 + G 78 -13.8 -3.16191 | CAAGCTGTTGGTGCG CCGCGTGC GGT GCGCGCGG TTGGTACGGCTGTGG ada 929311 - 930177 + | ADA regulatory protein, putative TERM 739 930285 - 930260 - g 93 -16.1 -3.4252 | overlap 930261 GCTGACGGACCATAA CGCCGCCCCGC CCGA ACGGGGCGGCA ACCGAGAAGGCAGTA TERM 740 930284 - 930261 - g 83 -17.4 -2.65298 | overlap 930260 CTGACGGACCATAAC GCCGCCCCGC CCGA ACGGGGCGGC AACCGAGAAGGCAGT RD1_0966 930192 - 930320 + | hypothetical protein RD1_0967 930304 - 930969 + | OmpA family domain-containing protein TERM 741 930984 - 931019 + F 88 -11.2 -4.13767 | gap 1, opp_overlap 930990, overlap 930988 930990 ACCCATCACCAAAGT GA-AAAAGGCCTCGCCC TGA GGGTGGGGCCTCTTGTC TTTTGCGATGGGCGC TERM 742 930988 - 931014 + F 90 -12.2 -3.96506 | opp_overlap 930990, overlap 930984 930990 ATCACCAAAGTGAAA AAGGCCTCGCCC TGA GGGTGGGGCCTC TTGTCTTTTGCGATG TERM 743 930990 - 931012 + F 95 -14.8 -3.56378 | opp_overlap 930990, overlap 930988 930984 CACCAAAGTGAAAAA GGCCTCGCCC TGA GGGTGGGGCC TCTTGTCTTTTGCGA TERM 744 931012 - 930990 - f 100 -10.4 -4.82855 | opp_overlap 930990 930988 930984 CACCAAAGTGAAAAA GGCCTCGCCC TGA GGGTGGGGCC TCTTGTCTTTTGCGA TERM 745 931432 - 931455 + G 73 -9.5 -3.97834 | CGCGCGGGCGGGGAA CGCGCGCAG ATGGTG CTGCGCGGG TTTATGGTGCCCTTC RD1_0968 931072 - 931614 + | NADPH-dependent FMN reductase domain-containing protein RD1_0969 932663 - 931632 - | oxidoreductase, FAD-binding, putative TERM 746 931711 - 931693 - G 71 -7.4 -4.19735 | opp_overlap 931693 931691 CCCTCCAAAAGCAAA TCGGCCAT CAC ATGGGCGA TCTTTGGGGCCATGC TERM 747 933310 - 933334 + G 82 -9.2 -4.34402 | overlap 933311 933312 CAGCCGCCGGTTTTG TTCGCCGCGC GCTGG GTGCGGCGGG TTTTGATGTGCAGCG RD1_0970 932727 - 933428 + | hypothetical protein RD1_0971 935343 - 933430 - | Slt family transglycosylase dapA 935530 - 936405 + | dihydrodipicolinate synthase dmsC 937364 - 936492 - | anaerobic dimethyl sulfoxide reductase, C subunit, putative TERM 748 937277 - 937258 - G 85 -7.2 -4.72863 | gap 1, overlap 937248 937253 GCAAAGAAAGCAAAA GCTGTC-CA GCC TGTGACAGC GGGCATGCCAATGCC RD1_0974 938122 - 937364 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 749 938150 - 938170 + r 72 -11.1 -3.10354 | TTCCGGAGTGGTTTT TCGACGTCG GTT CGGCGTCGG TATTGCGTCGGTATC phsA 941027 - 938208 - | thiosulfate reductase, putative TERM 750 938545 - 938570 + g 74 -11.9 -3.54424 | overlap 938534 TCCAGCACCGGCACG GTGATCTCTCC GTGA GGGGAGGTCAC TTTGGCCCAGTCACC TERM 751 939182 - 939169 - G 71 -5.9 -4.36914 | opp_overlap 939169 939181 TCTTCGTTCACAAAA CCGGG CAGT CCCAG TTTGGCACCAAGGGT TERM 752 940217 - 940233 + g 73 -10.1 -3.61398 | overlap 940220 940222 TCAGCAGGCCGTGGT CAGCCCC GCC GGGGTTG TTGTTCACGAGCACC TERM 753 940414 - 940424 + g 77 -8.2 -4.33153 | opp_overlap 940412 TTGACGCCAATGACG CGCG CGC CGCG TTTCTTGATCTTGCC TERM 754 940604 - 940590 - G 71 -7 -4.28548 | opp_overlap 940592 ATTGACCGAGCAAAA GCCGCC GTG GGCTGC GTAATTGCAGGTGCC TERM 755 941250 - 941265 + G 79 -8.2 -4.57341 | overlap 941251 CCCGGTGCGCATGGG TGCGGC CTGC GCCGCG TTTTTAGGGCCGGTT RD1_0976 941047 - 941478 + | hypothetical protein xsc 943222 - 941444 - | sulfoacetaldehyde acetyltransferase TERM 756 943173 - 943188 + g 70 -4.6 -4.57341 | AAGGCGTGTTCGATA CCATGC GCTT GCAGGG TTTTTACAAAGGCTT RD1_0978 944797 - 943316 - | GntR family transcriptional regulator TERM 757 944142 - 944156 + g 70 -12.8 -2.87132 | CAAGGGTCTTCCAGG GCGGCG CGC CGCCGC TGTGTCAGCAACACC TERM 758 944661 - 944677 + g 70 -3.6 -4.59109 | overlap 944642 AGATGCGCGGCCAGC CTGCGC GTTGA GGGCAG TTTTTCAGCCCTCTG ppk2 945033 - 945923 + | polyphosphate kinase 2 TERM 759 946105 - 946093 - g 71 -5.5 -4.42062 | overlap 946094 CAGGGCGGAAACAAA CGTCG AGC CGACA GATGATTTTCACATG RD1_0980 945947 - 946186 + | hypothetical protein TERM 760 946216 - 946234 + T 100 -17.4 -4.80882 | opp_overlap 946216 ATCGGTAAAAGGAAA GCCCCGGC AGT GCCGGGGC TTTTTCATGTAACGT TERM 761 946234 - 946216 - T 100 -17.4 -4.20136 | opp_overlap 946216 ATCGGTAAAAGGAAA GCCCCGGC AGT GCCGGGGC TTTTTCATGTAACGT tpa 947668 - 946277 - | taurine--pyruvate aminotransferase TERM 762 947227 - 947237 + g 76 -6.8 -4.57569 | opp_overlap 947227 CACGCTCGCGATAAA GCAC CTT GTGC TTTTTGCCGCCATAG TERM 763 947340 - 947326 - G 71 -7 -4.25458 | AATTGCAGTAATAAA CGCGGC TCA GCCCCG GCATCTTCTCGATCA TERM 764 948293 - 948273 - H 84 -3.3 -5.31877 | gap 1, overlap 948274 948275 948286 948287 ACGCACGACAAAAAA CGCCGATC AAACAG GATCGG-G CAACGATCAACGGGA TERM 765 948735 - 948723 - g 79 -9.1 -4.15044 | TTGGCGGGCAAGAAA GTGGC CGT GCCAC TGGGGACTGCCGCGC tauA 948318 - 949319 + | taurine ABC transporter, periplasmic binding protein TERM 766 949328 - 949358 + F 100 -21.3 -4.56597 | opp_overlap 949332, overlap 949332 CATGTAAGACGGTTG GAAACGGCGCAGG ACCAA CCTGCGCCGTTTC TTTTTCGGGGGCCGC TERM 767 949354 - 949332 - f 100 -16.3 -3.55548 | opp_overlap 949328 949332 TAAGACGGTTGGAAA CGGCGCAGG ACCAA CCTGCGCCG TTTCTTTTTCGGGGG TERM 768 949332 - 949354 + F 100 -16.3 -4.85782 | opp_overlap 949332, overlap 949328 TAAGACGGTTGGAAA CGGCGCAGG ACCAA CCTGCGCCG TTTCTTTTTCGGGGG tauB 949432 - 950238 + | taurine ABC transporter, ATP-binding protein tauC 950235 - 951503 + | taurine ABC transporter, permease protein TERM 769 951530 - 951548 + G 80 -10.2 -4.08216 | opp_overlap 951523 951530 951532 TCAGACAAGAAAAAA CGGGGCCT TTT GGGCCCTG TTTTCGCAAAAGTGA TERM 770 951548 - 951530 - g 100 -7.3 -5.60689 | opp_overlap 951530, overlap 951523 951532 TCAGACAAGAAAAAA CGGGGCC TTTTG GGCCCTG TTTTCGCAAAAGTGA RD1_0985 951485 - 951598 + | hypothetical protein RD1_0986 951649 - 951753 + | hypothetical protein TERM 771 952295 - 952273 - g 84 -11.2 -4.11216 | GTTTTACGTGGAAAA CCGCCTGCCC CTG GGGCAGATGG ATGGGGGCTGGCGCG RD1_0987 951731 - 952783 + | fatty acid desaturase, putative TERM 772 952810 - 952866 + T 91 -9.6 -4.62069 | gap 2, opp_overlap 952810 952809 952812, overlap 952816 AAATATCTGAAACAT CACGTATCACGCAGCGC-G-TTGAAATC TTT GATTCCAGTCAGCGTTGCGTGATTCATG TTTTTCGCATGACGC TERM 773 952816 - 952860 + T 74 -10.2 -3.60925 | gap 2, opp_overlap 952812 952810 952809, overlap 952810 CTGAAACATCACGTA TCACGCAGCGC-G-TTGAAATC TTT GATTCCAGTCAGCGTTGCGTGA TTCATGTTTTTCGCA TERM 774 952912 - 952968 + T 100 -11.8 -4.62069 | gap 2, opp_overlap 952903 952915 952918, overlap 952918 AAATACCTCGAACAT CAAGTATCGCGCAGCGC-GT-TGAAATC CTG GATTTCAGGCAGCGTTGCGTGATTCATG TTTTTCGCATGACGC TERM 775 952918 - 952962 + T 81 -12.4 -3.60925 | gap 2, opp_overlap 952915 952918, overlap 952912 CTCGAACATCAAGTA TCGCGCAGCGC-GT-TGAAATC CTG GATTTCAGGCAGCGTTGCGTGA TTCATGTTTTTCGCA deaD 955113 - 952996 - | DEAD-box ATP dependent DNA helicase TERM 776 953447 - 953460 + g 85 -5.9 -5.07567 | overlap 953458 TCAGGACGGGCATCG CGGTC CTCG GGCCG TTTTTTGCGGTGTGG TERM 777 954229 - 954187 - G 72 -14.1 -2.55351 | gap 1, opp_overlap 954228, overlap 954186 GTTGGGCAGATCAAT GC-CGCGCGCGGCCACATCG GTGG CAACGCAGACGCGCGCGCGC CCATCGCGCAGCGCT TERM 778 955469 - 955490 + G 74 -5.9 -4.56775 | gap 1 GTGGGAAGGCATGCG GCTCTATGAC GGG GTC-TGGAGC TTTTTCGACGCGCAT RD1_0990 955308 - 956246 + | branched-chain amino acid aminotransferase RD1_0991 957581 - 956253 - | WD-containing repeat protein TERM 779 957203 - 957255 + g 71 -8.3 -4.07568 | GCCCGTCCGGGGCGG CGGCAAGGCGGATGACCTTGGCA TTATGTC TGCCAAGTTCGCGCACCGTGCCG TTTTGCGGCGACCAG RD1_0992 957791 - 958105 + | ArsR family transcriptional regulator RD1_0993 958180 - 959382 + | oxidoreductase, putative RD1_0995 959963 - 959637 - | hypothetical protein RD1_0996 960096 - 960785 + | hypothetical protein RD1_0997 960841 - 961485 + | transcriptional regulator, putative accA 962480 - 961518 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha RD1_0999 963135 - 962539 - | amino acid transporter LysE RD1_1000 963208 - 963660 + | AsnC family transcriptional regulator citE 964632 - 963676 - | citrate lyase, beta subunit, putative TERM 780 964002 - 964016 + g 74 -11.4 -3.53811 | opp_overlap 963984 963985 CATGCGTCCGGCAGG CGGCCA CGA TGGCCG TTTGCGCCCAATGCC TERM 781 964725 - 964697 - H 81 -12.5 -3.05294 | overlap 964687 TTAAATTGCGCAAGA TGCTGCAAGTGCA TTT CGCAGTTGCAGCA AAACAAATCAGATGT RD1_1002 964892 - 965893 + | hypothetical protein RD1_1003 965932 - 966897 + | hypothetical protein dat 966894 - 967760 + | D-alanine aminotransferase TERM 782 968113 - 968148 + G 75 -8.3 -4.21936 | gap 2 CCGCGTTCGGTTTAT TGCG-CCGG-TGCCCGC TGGT GCGCGTATCCGGACGCA TTTTGACCTTGTCGA nodN 967826 - 968275 + | nodulation protein N-like protein RD1_1006 968664 - 968353 - | hypothetical protein pyk 968887 - 970335 + | pyruvate kinase RD1_1008 971116 - 970370 - | hypothetical protein rpmI 971357 - 971557 + | 50S ribosomal protein L35 rplT 971570 - 971935 + | 50S ribosomal protein L20 TERM 783 971962 - 971982 + F 100 -14.7 -5.4505 | opp_overlap 971962 GATCAACAGTTCAAA GCCGCTCTC CCG GAGGGCGGC TTTTTTGTTGGACGG TERM 784 971982 - 971962 - f 86 -12.5 -3.67517 | opp_overlap 971962 GATCAACAGTTCAAA GCCGCTCTC CCG GAGGGCGGC TTTTTTGTTGGACGG RD1_1011 972360 - 973028 + | hypothetical protein pheS 973220 - 974293 + | phenylalanyl-tRNA synthetase, alpha subunit TERM 785 975384 - 975408 + G 72 -2.8 -4.86731 | gap 1, overlap 975385 AGCATCACCATCGAG GCGGATAC-GC TGGA GCAGTGTCCGG TTTTCTTTGGCCGGG TERM 786 976054 - 976030 - g 90 -14.3 -3.56643 | TGGACATCCCCGAAA GCAGTCAGCGC CAG ACGCTGACCGC GCTGGGGTTCCGCCT pheT 974748 - 977147 + | phenylalanyl-tRNA synthetase subunit beta RD1_1014 977204 - 977653 + | hypothetical protein TERM 787 977668 - 977684 + F 70 -10.1 -3.41366 | overlap 977665 977664 ACTGACCCTCCCGAG GCGCAGG TGA TCTGCGC TCTGTTTTCGGGTCC TERM 788 977693 - 977725 + F 71 -4.8 -4.58395 | overlap 977697 TCTGCGCTCTGTTTT CGGGTCCCGGCGC-TC CTT GACGTGCCGGG-CGTG TTTTTCCCCCGTGGA TERM 789 978077 - 978104 + G 71 -6.3 -4.2928 | TGGCAATTTCATCAT GGCCGTGATCA ATTTTC TGATCATCGCC TTTGTGGTTTTTATG mscL 977823 - 978251 + | large conductance mechanosensitive channel protein TERM 790 978335 - 978278 - T 91 -7.2 -5.08824 | gap 3, opp_overlap 978282 978284, overlap 978279 978280 GCGTCATGCAAAAAA CCTCG-ATCACGCAACGCTGCCTGAAACC CGG GGTTTCA-AC-GCGTTGCGCGATGCTTGA TGTTCCAGGTATTTC TERM 791 978372 - 978413 + T 100 -21.8 -2.81471 | opp_overlap 978379, overlap 978379 CGTTCTATATACGAT TAAAAAAGGGCCTGCCGG CATCTA CCGGCAGGCCCTTTGTTA TGTGATGGGGTTCTG TERM 792 978379 - 978406 + T 100 -19.9 -4.41114 | opp_overlap 978379, overlap 978372 TATACGATTAAAAAA GGGCCTGCCGG CATCTA CCGGCAGGCCC TTTGTTATGTGATGG TERM 793 978406 - 978379 - T 100 -20.6 -5.20216 | opp_overlap 978379 978372 TATACGATTAAAAAA GGGCCTGCCGGC ATCT ACCGGCAGGCCC TTTGTTATGTGATGG RD1_1016 979773 - 978448 - | hypothetical protein RD1_1017 979916 - 979770 - | hypothetical protein TERM 794 979828 - 979840 + g 90 -4.7 -5.40474 | AAATCAGATTCGCGC CCGCG TCG CACGG TTTTTTTCAGGAAAT TERM 795 980973 - 980993 + G 76 -5.3 -4.60487 | overlap 980985 GGGCACTGGCCTGGC TGCTGGTGC CGG GCAACCGCA TTTTTGCGGATGATG TERM 796 981364 - 981381 + G 78 -2.5 -5.14563 | overlap 981366 GGTGTCCGATCAGGG CACGGCC ACGG GGACGGG TTTTTTCGTGGGGCC RD1_1018 980171 - 982012 + | periplasmic serine proteinase, putative TERM 797 982357 - 982337 - g 100 -13.3 -4.57341 | AAGCTGGCGGAAAAA CAGCGCCTC GGT GAAGCGCTG GCCAATGCGCTCGAA RD1_1019 982025 - 983314 + | hypothetical protein TERM 798 985357 - 985380 + G 89 -11.6 -4.20531 | opp_overlap 985357 985359 GGCGGTCAGGACCAA CAGGCGGTGC AGCG GCGCCGCCAG TTTTCCGTGCGTGTG RD1_1020 983314 - 986430 + | hypothetical protein TERM 799 987077 - 987047 - g 76 -9.8 -3.74519 | AAGAGGTCTATGAAA TCGCCGAATACGTC GAA AACACATTCGGCAA GGTCGCCTATGCCAG TERM 800 988187 - 988169 - g 72 -11 -3.33419 | overlap 988167 988163 988178 AGCCGGAAAGCAAGA TGGGCCAA ATC TCGGCCCA GTTGGACAAGATGAC TERM 801 988288 - 988272 - g 78 -7.2 -4.67982 | GCGGATCGAAGAAAA GCGCGA AGCTG CCGCGC AGATCATCGACTGCC RD1_1021 986461 - 989160 + | hypothetical protein TERM 802 989688 - 989665 - g 70 -10.2 -3.56099 | opp_overlap 989664, overlap 989685 CACAACCGGTCGAAA CGCCTGCGCC CAAG GGCAAAGGCG GTCTGATCGCCGGTC RD1_1023 989247 - 990197 + | hypothetical protein TERM 803 991405 - 991428 + G 71 -8.8 -3.82202 | AGCCGCTACCGTGCG CTGTCGACCT TTGC GGGTCGTCAG TTCTATTTCCCCATC RD1_1024 990208 - 992115 + | hypothetical protein TERM 804 992620 - 992640 + G 71 -6.7 -4.21194 | CGGGTGGCGATTGCG CGCGCGCTG GCC CATCGCCCG TTTTGCGTGATCGCG RD1_1025 992125 - 992904 + | ABC transporter, ATP-binding protein, putative RD1_1026 992904 - 994100 + | ABC transporter, permease protein, putative TERM 805 995528 - 995557 + G 95 -12.1 -4.18934 | opp_overlap 995520 TATCAGACCCTGTCG CAGGACCTGATCG AGGC CGAACAGGTCCCG TTTCTTGAGATGCTG RD1_1027 994097 - 995656 + | hypothetical protein RD1_1028 996659 - 995763 - | hypothetical protein RD1_1029 997612 - 996656 - | hypothetical protein TERM 806 997336 - 997305 - G 93 -11.5 -4.37502 | opp_overlap 997331 ACGATTATATCAAAA GGCGCGCCCGCCA GAGCCT TGGCAAGTGCGCC GCGTTGGGTCGCATG TERM 807 997688 - 997705 + H 77 -4.1 -5.12617 | CAAAAGGAGCGTTAT TCATGAG CGCG CTCAGGA TTTTTTCGGTGGTTG TERM 808 997722 - 997758 + G 70 -10.8 -3.54424 | overlap 997754 997756 TTTTTCGGTGGTTGG TGCTGTCGCGCTGGTG GTCGG CAGTGGCGCGGCGGCA TTTGCAGCCCTGCAA RD1_1030 997690 - 998346 + | hypothetical protein TERM 809 999108 - 999139 + G 82 -10.9 -3.86897 | gap 1, opp_overlap 999104 ATGGAAAGCTATCAC CTGCCGGT-GTGCC ACGCG GGCACCATCGGCGG TTTGTCGAGGCTGGA RD1_1031 998478 - 999623 + | Rieske (2Fe-2S) domain-containing protein RD1_1032 999682 - 1000089 + | hypothetical protein ald 1001279 - 1000161 - | alanine dehydrogenase TERM 810 1001212 - 1001183 - G 84 -9.9 -4.25104 | gap 1, opp_overlap 1001185, overlap 1001149 1001148 TCGTTTCGATCAAAA CCCG-GTGCCCGTG TGA CACGGCCTCGCGGG CGGCGTTTGGTGTCA TERM 811 1001185 - 1001217 + g 71 -8.9 -3.83026 | opp_overlap 1001149 1001148 1001183 GTTTCGATCAAAACC CGGTGCCCGTGTGAC ACG GCCTCGCGGGCGGCG TTTGGTGTCAGGCCG TERM 812 1001602 - 1001619 + G 74 -3.3 -4.84359 | overlap 1001603 TGGATGCGCGCAAGA TGGGCGT GCCG ACGACCG TTTTTGTGGAGATCA RD1_1034 1001415 - 1001879 + | AsnC family transcriptional regulator TERM 813 1001969 - 1001990 + G 70 -4.3 -4.49337 | overlap 1001956 GTCGCGGCCGGGGCG CAGGAGGCG CAGG CGCGTGCTG TTTTGATTGATGTTG RD1_1035 1001879 - 1002481 + | hypothetical protein TERM 814 1002612 - 1002587 - Tf 100 -18.3 -4.86731 | opp_overlap 1002587 CCCTTCCAAACAAAA CCCCCGCGTGG AGGT CCACACGGGGG TTCGCTGATTCAAAA TERM 815 1002587 - 1002612 + TF 93 -16.1 -3.13164 | opp_overlap 1002587 CCCTTCCAAACAAAA CCCCCGCGTGG AGGT CCACACGGGGG TTCGCTGATTCAAAA RD1_1036 1002765 - 1002646 - | hypothetical protein RD1_1037 1002748 - 1002879 + | hypothetical protein RD1_1038 1002966 - 1003664 + | hypothetical protein RD1_1040 1003728 - 1004714 + | alcohol dehydrogenase, zinc-containing, putative TERM 816 1005470 - 1005486 + G 74 -5.8 -4.56961 | gap 1 CCTTTGGGAATGCGT CGG-GGC CGGT GCCGCCG TTTTCTGTCGGTATT qor 1004749 - 1005723 + | quinone oxidoreductase RD1_1042 1006349 - 1005720 - | ribonuclease T2 family protein TERM 817 1006432 - 1006411 - H 73 -8.7 -3.80625 | overlap 1006406 CCCCCACAATGGAAA CCGTTCCGA GGCT TCGGAACCG CCCTTCAAGGCGATT RD1_1043 1006487 - 1007263 + | hypothetical protein TERM 818 1007293 - 1007314 + F 100 -10.8 -5.27335 | opp_overlap 1007292 TCTGATTTATTCAAT CCCCGGTG CATTGT CGCCGGGG TTTTTGTTTCGGGGC RD1_1044 1007399 - 1007740 + | endoribonuclease L-PSP family protein, putative recR 1008444 - 1007851 - | recombination protein RecR RD1_1046 1008845 - 1008501 - | hypothetical protein dnaX 1010659 - 1008911 - | DNA polymerase III subunits gamma and tau TERM 819 1009188 - 1009208 + g 74 -6 -4.55287 | overlap 1009189 CGCTGCCCAAGCCGT TGCGCCAG ATCGG CGGGCGCG TTTTCTGTCGGTGCA TERM 820 1010335 - 1010349 + g 73 -10 -3.65902 | overlap 1010336 TCGCGACCCCGGTAT TGGACG CCG CGTCCA TTTCCATCACATCGA TERM 821 1010540 - 1010552 + g 70 -3.3 -4.61231 | opp_overlap 1010549 CTGCGCGATGCGGTC CGCTT CAA ACGCG TTTTTCAGCGTCTGA TERM 822 1010750 - 1010728 - R 76 -9.2 -3.9461 | overlap 1010745 CGCGTCCAAGAACAA CGGCACTT GGCAAAG AAGTGCCG CAGGGACCCCGCCAA idnD 1011895 - 1010849 - | L-idonate 5-dehydrogenase, putative TERM 823 1011447 - 1011424 - G 84 -10.9 -4.07124 | CAGCATGCAGACAAA CCGCCAGCG GCTCGG CGCAGGCGG CATGTGCGATATCGG RD1_1049 1013185 - 1011908 - | TRAP dicarboxylate transporter, DctM subunit TERM 824 1012559 - 1012518 - G 86 -12.3 -3.8901 | gap 1 CCGTAAAGGATCAAA GCGGTCATC-GCGAGCGC CCAGAAC GCGCCCGCAAAGGACCGC CCGATTTCGCCCACG TERM 825 1012790 - 1012805 + g 81 -6 -4.7254 | opp_overlap 1012789 1012790, overlap 1012800 GGCGGCAGAAAAATC GGCGGG GTAT CCGGCC TTTTTCATGCCCGGT RD1_1051 1013682 - 1013188 - | TRAP dicarboxylate transporter, DctQ subunit, putative TERM 826 1013251 - 1013233 - G 88 -7.4 -5.00616 | CGTGCCGGCAAAAAA GAGCATCG AAA CGATCCTC AGCAGGGCAAAAACC TERM 827 1013275 - 1013265 - G 73 -4.6 -4.63527 | TCAGCAGGGCAAAAA CCGC AAG GCAG GCGAGCAATGCGAGA TERM 828 1013312 - 1013300 - G 81 -6.3 -4.78149 | opp_overlap 1013311 GCGAGAACTGAAAAA TGGAT GTA ATCCA TGCGCACGCCCAAGG TERM 829 1013650 - 1013626 - G 81 -4.2 -4.94972 | gap 1 GATGAGAACGAAAAA GGACAGC-CCG ACAC CGACGCTGGCC AAACCCACGATGATC TERM 830 1013737 - 1013714 - R 72 -11 -3.07431 | gap 1, opp_overlap 1013705 1013705 1013731, overlap 1013706 1013705 1013703 AAAATAGGTGCAAGA GCCGCCGGGTC GAT GACC-GACGGC TCTCGCGGGCGTTTT RD1_1052 1014728 - 1013751 - | C4-dicarboxylate transport system, substrate-binding protein, putative RD1_1053 1015470 - 1014745 - | GntR family transcriptional regulator RD1_1054 1016475 - 1015660 - | phosphonate ABC transporter, permease protein, putative phnE 1017296 - 1016475 - | phosphonate ABC transporter, permease component phnC 1018084 - 1017293 - | phosphonate ABC transporter, ATP-binding protein phnD 1019126 - 1018152 - | phosphonate ABC transporter, periplasmic binding protein, putative TERM 831 1019280 - 1019254 - H 78 -5.9 -4.7373 | overlap 1019278 1019279 TGATCTCAGGAAAAA CAGTTTGAATC GCTGT GTTTCAAACCG CGCAGGGCCACTTCT RD1_1058 1019268 - 1019378 + | hypothetical protein TERM 832 1019624 - 1019636 + G 70 -3.3 -4.63218 | GAGTGCGGCGCATGC CGACA AGC TGACG TTTTATTGCAGCGCG RD1_1059 1019553 - 1020578 + | iron ABC transporter iron-binding protein, putative TERM 833 1020606 - 1020653 + G 74 -4 -4.73682 | gap 1, opp_overlap 1020612, overlap 1020603 1020607 1020607 GCCACATCCGAACGG ACC-ACACATCCGGTTTTGACCT TCT GGGTCATTGCCGGGTGGGTCGGG TTTTGTCTTCTGCCA TERM 834 1021070 - 1021122 + G 70 -4.3 -4.49937 | gap 3, opp_overlap 1021070, overlap 1021061 1021064 1021070 1021071 GCGTGGGGCCATCAA TGGCGATGTCTTTGTGGTCAGCGCCA TTGG TGGCG-TGATCGC-AAT-CGTCGCCG TTTTCGTCTTCTTCC TERM 835 1021385 - 1021371 - g 86 -12.8 -3.85698 | GGCTTTCGCTACAAA CGCGCG ATC CGCGCG CTGACGGTACTGCCC RD1_1060 1020582 - 1022801 + | iron ABC transporter, permease protein, putative fbpC 1022798 - 1023874 + | Fe-ABC transporter, ATP-binding protein TERM 836 1024153 - 1024171 + G 100 -8.8 -5.00616 | ACCGCCCCCCGAGTT CGAAGCCG CCG CGGATTCG TTTTTTGCGCAGCCC TERM 837 1024271 - 1024243 - g 75 -8 -4.27316 | GGGTCGAATTGAAAA CGCTGTGCGCGG TATCG CGGCGCACCACG GAACCGGCGATCTTG RD1_1062 1023875 - 1024438 + | phosphoglycerate mutase, putative TERM 838 1025109 - 1025091 - g 74 -3.7 -4.74013 | overlap 1025092 1025093 GGGAAACAGACAAAA CGCCGGG CAGTT CCGGGCA GGATAAGGACGCATA RD1_1064 1024946 - 1025125 + | hypothetical protein murA 1025130 - 1026398 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase RD1_1066 1026398 - 1026865 + | hypothetical protein TERM 839 1028027 - 1028041 + G 75 -8.5 -4.2558 | overlap 1028026 CACGTGCTTCCGACC GCGCG GTCTG CGCGC TTTTCATCGGGGCTG hisD 1026911 - 1028224 + | histidinol dehydrogenase RD1_1069 1028294 - 1028773 + | hypothetical protein arsC 1028774 - 1029235 + | arsenate reductase, putative RD1_1072 1030804 - 1029242 - | putative cyclooxygenase TERM 840 1029554 - 1029517 - G 78 -13.3 -3.26471 | gap 1, overlap 1029500 1029497 CGACGTGCAGATCAA CGTCGCGC-GGCCCGTCA TAG TGTCTGGCCAGCGCGTCG CTGACCTCCGGATCA RD1_1073 1030990 - 1031304 + | hypothetical protein RD1_1074 1031350 - 1031757 + | hypothetical protein RD1_1075 1031747 - 1032334 + | hypothetical protein RD1_1076 1032740 - 1032339 - | hypothetical protein RD1_1077 1034092 - 1032815 - | hypothetical protein TERM 841 1034288 - 1034300 + Gr 74 -10.5 -3.54741 | GTCATGGGGCGACGA GGCGG AGG CCGCC TTTGGCGAAGTGCTG RD1_1078 1034091 - 1034384 + | modification methylase, putative RD1_1079 1035049 - 1034399 - | DNA methyltransferase RD1_1080 1035729 - 1035049 - | hypothetical protein TERM 842 1035279 - 1035301 + g 73 -9 -3.96068 | opp_overlap 1035265 ACCTGAAATTATTCA GGTCCCGATC ATA GAACGGGTCC TTGTTGTTCCACTCA TERM 843 1035324 - 1035334 + g 81 -8.2 -4.61231 | TCCACTCAATTTCTA CGGC AAC GCCG TTTTTGAACATGTCG TERM 844 1035380 - 1035392 + g 71 -6.3 -4.34402 | GTTTCTGTCTCGACA TTGTC AAC GACAA TTTTGGTATCAAAAC TERM 845 1036637 - 1036618 - g 90 -4.9 -5.31877 | opp_overlap 1036629 1036631 ACGCATGAGAAAAAA GGCACCG AGGTCG CGCTGCC GGGGTTCAAGCCCTC lepA 1035772 - 1037571 + | GTP-binding protein LepA RD1_1082 1037678 - 1038313 + | hypothetical protein RD1_1083 1038647 - 1038826 + | hypothetical protein RD1_1084 1038887 - 1039201 + | hypothetical protein TERM 846 1039255 - 1039274 + T 70 -5.6 -4.42386 | gap 1, overlap 1039258 1039263 GTTCTTAGATCGCTT CGTCGAGCG CTT CGCCCG-CG TTTTGTACGTCGCGG RD1_1085 1039360 - 1039244 - | EcnA/B family entericidin TERM 847 1039437 - 1039460 + r 70 -6.7 -4.14243 | opp_overlap 1039434 1039437 CACGCGAAAAAGTGA TCTCCGCAG CGCTTT CTGCGGAAA TTTTCCCATGGGGTC RD1_1087 1040066 - 1039587 - | hypothetical protein RD1_1088 1040677 - 1040063 - | hypothetical protein TERM 848 1040498 - 1040542 + g 84 -3.5 -5.24531 | gap 1, overlap 1040499 1040500 CTGATCAAGCCCGCG ATGGAGTTCGGCGATGGCCC CGCTGC GCGCTG-CGCCGAATTCCGC TTTTTTCTGGCCGCT RD1_1089 1040840 - 1040700 - | hypothetical protein RD1_1090 1041963 - 1040815 - | hypothetical protein TERM 849 1041372 - 1041392 + gr 76 -11.9 -3.0587 | overlap 1041335 1041334 GGTGCATGGGGGCGG GCGGGTTTG CGA CAAATCCGC TGTATCTGAGTTTTT RD1_1092 1042544 - 1041960 - | phosphoglycerate mutase, putative RD1_1093 1043617 - 1042541 - | glycosyltransferase, putative TERM 850 1043623 - 1043603 - G 71 -8.1 -4.07885 | overlap 1043604 CATCGGTGCGTAAAA GGCGGCGGG TAT CACGCCGCG TCCTGCATCATCGTG RD1_1094 1044861 - 1043614 - | glycosyl transferase, putative RD1_1095 1046090 - 1044858 - | hypothetical protein TERM 851 1046521 - 1046507 - g 76 -5.6 -4.69664 | opp_overlap 1046513, overlap 1046508 1046509 1046518 GACATCATGGAAAAA GCCGCC GAA AACGGC GTTGGCGTCGTGGTC TERM 852 1048693 - 1048646 - g 85 -6.2 -5.10154 | gap 1, overlap 1048649 ACCGAAAAGGAAAAA CAGGCCATCACCG-CCGCCGC CCGCGCC GCGGTGGACGATGACGCACTG GAGGGCGGCGCACCC RD1_1096 1046348 - 1048726 + | mechanosensitive ion channel protein, putative RD1_1097 1048926 - 1049036 + | hypothetical protein TERM 853 1049031 - 1049011 - T 100 -14.7 -5.58074 | CAACCATCAAAAAAA CGGGCGCTC CAA AAGCGCCCG AGTAAGGTCGTCGTA RD1_1098 1049737 - 1049060 - | hypothetical protein RD1_1099 1051158 - 1050004 - | oligopeptide ABC transporter, permease protein TERM 854 1050440 - 1050427 - G 74 -3.7 -4.79223 | overlap 1050429 1050430 CGAGATGATGAAAAA GACCG ACAC CGGGC TCCAGTTCGACGGAA RD1_1100 1052183 - 1051155 - | oligopeptide ABC transporter, permease protein, putative TERM 855 1051860 - 1051812 - G 71 -6.5 -4.18367 | opp_overlap 1051852 1051853 GACCATATAGACAAA CAGCACCGCGGCGAGGTTGAC CAGTACC GTCAGCCACAGCGCGTCGCCG ACGATTTCATCGACG RD1_1101 1054105 - 1052180 - | oligopeptide ABC transporter, periplasmic binding protein, putative TERM 856 1053314 - 1053302 - G 73 -9.1 -3.85698 | opp_overlap 1053301 1053300 1053306 GGGGTTGCGCACAAA CAGCC GCT GGCTG GATTTACCAGCACTG RD1_1102 1055873 - 1054098 - | ABC transporter ATP-binding protein, putative TERM 857 1055022 - 1055047 + g 74 -6.8 -4.30978 | GGTCTTGCAGACGCT GCGCAGTTCG AGGATG TGATCTGCGC TTTTGGTGCGTTCAA TERM 858 1055403 - 1055459 + g 86 -15.1 -3.35046 | opp_overlap 1055418 1055452 1055453, overlap 1055403 1055404 CATCCCGCCGGACAT CTCGAACGGATAGGATTTCCAGACCCG CGC CGGGTCGGGAAAACCAACACGTTCGAA TGTTTCCAACACTGA TERM 859 1055404 - 1055458 + g 85 -18.6 -2.60813 | opp_overlap 1055418 1055452 1055453, overlap 1055403 1055403 ATCCCGCCGGACATC TCGAACGGATAGGATTTCCAGACCCG CGC CGGGTCGGGAAAACCAACACGTTCGA ATGTTTCCAACACTG TERM 860 1055444 - 1055418 - G 76 -15.2 -2.66733 | opp_overlap 1055404 1055403 1055403 CTCGAACGGATAGGA TTTCCAGACCCG CGC CGGGTCGGGAAA ACCAACACGTTCGAA RD1_1103 1055981 - 1056529 + | hypothetical protein rpe 1057243 - 1056551 - | ribulose-5-phosphate 3-epimerase RD1_1106 1059079 - 1057382 - | putative long chain fatty acid acyl-CoA ligase RD1_1107 1059921 - 1059172 - | hypothetical protein TERM 861 1059382 - 1059352 - G 77 -3.3 -5.00895 | gap 2, overlap 1059378 1059379 TTCACCAGATAAAAA CCCGACCTGCGCGTA AGT CAC-CACAAG-CGGG AGTGACCCGACCGAG TERM 862 1059707 - 1059696 - G 70 -3.6 -4.58283 | GAACGGCGGCAAAAA GCCA GTAT CGGC GTGCTGTTCGTTTCA TERM 863 1059822 - 1059810 - G 81 -5.5 -4.82901 | overlap 1059821 GCGGGTCCAGAAAAA GCGTC ATG AACGC AATGGCCGCCGTCGG idnD 1061020 - 1059989 - | L-idonate 5-dehydrogenase, putative TERM 864 1061778 - 1061760 - g 79 -8 -4.56775 | overlap 1061761 1061764 ACGTGGCTTGAAAAA CGCACCCC TGC GGGGCGCT GGGGCAAGGTCGAGG TERM 865 1061777 - 1061761 - g 72 -11.5 -3.33744 | overlap 1061760 1061764 CGTGGCTTGAAAAAC GCACCCC TGC GGGGCGC TGGGGCAAGGTCGAG TERM 866 1061826 - 1061836 + G 71 -5.4 -4.42386 | ATTTTTCTGGCATCG GATG CGT CATC TTTTGTCAATGGGAC idnO 1061133 - 1061891 + | gluconate 5-dehydrogenase RD1_1110 1061940 - 1062599 + | hypothetical protein RD1_1111 1063993 - 1062596 - | exonuclease, putative TERM 867 1063967 - 1063985 + g 78 -4.4 -4.8048 | opp_overlap 1063966 1063967 AAAGAACAGAAAGAC CCGGAGCC GGA GGCTGAGG TTTTTCATCTCACAC RD1_1112 1064519 - 1063995 - | hypothetical protein RD1_1113 1066379 - 1064553 - | nucleotidyltransferase, putative TERM 868 1065758 - 1065788 + g 74 -11.9 -3.53224 | gap 1, overlap 1065747 1065746 TGATGTCGCTGAGCG GCGTTTGCGG-GGG CAGA CCTGCCGCAAGCGC TTTGCCCACAAGGTC TERM 869 1066399 - 1066431 + r 95 -11.9 -4.4009 | opp_overlap 1066388 1066399 1066400 1066403, overlap 1066401 ACATCCTTGAAGAAA GGCACCTGCCCCACG TCA TGCGGGGCAGGTGTG TTTTGTGGACTGGCC TERM 870 1066431 - 1066399 - R 88 -11.2 -4.16284 | opp_overlap 1066399 1066401, overlap 1066388 1066400 1066403 ACATCCTTGAAGAAA GGCACCTGCCCCAC GTCAT GCGGGGCAGGTGTG TTTTGTGGACTGGCC TERM 871 1066430 - 1066400 - R 91 -14.7 -3.09288 | opp_overlap 1066399 1066401, overlap 1066399 1066403 CATCCTTGAAGAAAG GCACCTGCCCCAC GTCAT GCGGGGCAGGTGT GTTTTGTGGACTGGC TERM 872 1066401 - 1066429 + r 100 -16.7 -3.80877 | opp_overlap 1066400 1066399 1066403, overlap 1066399 ATCCTTGAAGAAAGG CACCTGCCCCACG TCA TGCGGGGCAGGTG TGTTTTGTGGACTGG TERM 873 1066427 - 1066403 - R 83 -15 -2.75825 | opp_overlap 1066401 1066399, overlap 1066400 1066399 CCTTGAAGAAAGGCA CCTGCCCCAC GTCAT GCGGGGCAGG TGTGTTTTGTGGACT TERM 874 1066431 - 1066472 + r 78 -12.3 -3.25719 | gap 1 ATGCGGGGCAGGTGT GTTTTGTGGACTGGCCGGGG ATT TCCCGGCCAA-CCGCAAGGC TTAGTGATCTACTGC RD1_1114 1068275 - 1066473 - | sodium symporter, putative RD1_1115 1068563 - 1068279 - | hypothetical protein TERM 875 1068525 - 1068543 + g 72 -2.3 -4.79953 | overlap 1068526 1068527 CCCACCCGCGTCCTC CGCAGCC CGGCT GTCTGTG TTTGTTTGTTGTTCT adk-2 1069306 - 1068620 - | adenylate kinase acsA 1071233 - 1069311 - | acetyl-coenzyme A synthetase RD1_1118 1071707 - 1072297 + | ErfK/YbiS/YcfS/YnhG family protein TERM 876 1072740 - 1072705 - g 76 -10.4 -3.72576 | gap 1, opp_overlap 1072712, overlap 1072708 CTGGGGCGCACGAAA GACCTGCGCGCGGCG TTGATGT CGCCGCGCAC-GCTC GCGATGGGGGCTGTG rarD 1072516 - 1073412 + | rarD protein, putative RD1_1120 1074546 - 1073413 - | peptidoglycan binding domain-containing protein TERM 877 1074211 - 1074234 + g 78 -13.8 -3.25823 | opp_overlap 1074192 GGCGTATTGACGCCG CGCATCGCGC CCCT GCGCGACGCG TTCGTCTGACACGGC TERM 878 1074379 - 1074341 - G 74 -10.9 -3.53012 | gap 1, opp_overlap 1074326 1074361 CCCGTGCCCTGGAAA GCGCGGCGCAGGGTGTCA TCCG TGATGCCC-GCGGCGCGC GCACGTTGCTGAAAG TERM 879 1076724 - 1076697 - gH 71 -7.8 -4.04206 | gap 1, opp_overlap 1076685 1076705 TGACGTTGATATAAA CGTTT-CGCCG ATTGTCG CGGCGGAAACG GACGCGCCGGTTGTT TERM 880 1076854 - 1076912 + GH 76 -12 -3.04398 | gap 3, opp_overlap 1076862, overlap 1076862 CCTCCGGGGGTCGTT GTCCAAAACG-CGCCGGCCGGCAGTGTTA CCTA TGACCCTG-CGGCTGGTGGCGTTTTG-AC CTTTTCAGGGACCCC TERM 881 1076862 - 1076905 + GH 84 -8.9 -4.28049 | opp_overlap 1076862, overlap 1076854 GGTCGTTGTCCAAAA CG-CGCCGGCCGGCAGTGTTA CCTA TGACCCTG-CGGCTGGTGGCG TTTTGACCTTTTCAG TERM 882 1077936 - 1077954 + GH 71 -6.6 -4.15106 | opp_overlap 1077932 1077936, overlap 1077926 1077924 1077923 TGCCACGGAAACGGA TAGCCCGG TTT CCGTGCTG TTTTCCGACTTCATC TERM 883 1080480 - 1080498 + GH 76 -8.8 -3.97947 | ACCCGTGACCGAAGC CACGCTGG ATG CCGGTGTG TTTGTCGTGGATACC RD1_1121 1075024 - 1083273 + | hypothetical protein TERM 884 1085137 - 1085151 + GT 71 -6.4 -4.17491 | ACCTACGTTTGATCA GTCGCA GGT TGTGAC TTTTGCAGATTTGCT RD1_1122 1083101 - 1085944 + | hypothetical protein RD1_1123 1087248 - 1085941 - | HlyD family secretion protein TERM 885 1086560 - 1086588 + g 70 -4.5 -4.46926 | gap 1, overlap 1086559 ACGGCCTGACGGCTG CGGCTGAGGACG GAGTCG CGTTC-CTGCCG TTTTCTGGTCCGCTC RD1_1124 1089515 - 1087245 - | toxin secretion ABC transporter, ATP-binding component, putative TERM 886 1089137 - 1089119 - G 71 -8 -4.07568 | TCCGGGCGGTCAAAA CGCAGGCG TCA CGTCCGCG CAACAGTAAGACGAC aggA 1090924 - 1089512 - | agglutination protein, putative TERM 887 1089569 - 1089548 - G 73 -10.8 -3.60792 | GCGCCAATCGCTAAA GCCGCGCG CGTCAT CGCGCAGC TTCACGGGTTCGGAA TERM 888 1091587 - 1091603 + G 95 -6.5 -5.40474 | GACCTTGAATCGCGC CTGTCCG AAG CGGAAAG TTTTTTTGCGCAACT RD1_1126 1091113 - 1091778 + | OmpA family domain-containing protein RD1_1127 1091883 - 1092440 + | hypothetical protein RD1_1128 1092548 - 1093390 + | hypothetical protein TERM 889 1093447 - 1093478 + T 71 -8.1 -3.80014 | overlap 1093433 ATGACGGATGTCAAT GCGTCATGTGA TTCAGGTTTT TCGCATGACGC TTTAATGCTCAGTCT cysE 1094286 - 1093480 - | serine acetyltransferase RD1_1130 1095221 - 1094289 - | hypothetical protein TERM 890 1094880 - 1094862 - G 77 -11 -3.61398 | GCGTTGCCCCAAGAA GATCGCCC CAA GGGCAATC GCAAAGACGGGCATG RD1_1131 1095523 - 1095302 - | tautomerase, putative RD1_1132 1095911 - 1095528 - | hypothetical protein gst 1096516 - 1095908 - | glutathione S-transferase RD1_1134 1096623 - 1097513 + | LysR family transcriptional regulator RD1_1135 1098203 - 1097607 - | HTH-type transcriptional regulator acrR, putative RD1_1136 1098287 - 1098916 + | hypothetical protein RD1_1137 1098929 - 1099060 + | hypothetical protein RD1_1138 1099566 - 1099378 - | hypothetical protein TERM 891 1099745 - 1099725 - R 87 -8.2 -4.53034 | opp_overlap 1099719 1099738 1099739, overlap 1099726 TGCACACAAGCAAAA TGCCTCGC GTGAT GCGAGGCC TAAGGCTTTGGTATT TERM 892 1099744 - 1099726 - R 78 -11.7 -3.31097 | opp_overlap 1099719 1099738 1099739, overlap 1099725 GCACACAAGCAAAAT GCCTCGC GTGAT GCGAGGC CTAAGGCTTTGGTAT RD1_1140 1105137 - 1099933 - | hypothetical protein TERM 893 1104718 - 1104706 - G 81 -4.8 -5.0133 | overlap 1104708 GAGCCGTCTAAAAAA GTCG TCTGC CGAC GTGGATACACGAGCC RD1_1142 1105366 - 1105665 + | hypothetical protein TERM 894 1106278 - 1106266 - f 76 -10.5 -3.62597 | GTCAGCTTTGAAGAA GCCGC AAC GCGGC AGCGGTCGTCAAGAC RD1_1143 1106443 - 1106709 + | hypothetical protein RD1_1144 1106745 - 1107557 + | integrase catalytic subunit RD1_1145 1108630 - 1107704 - | hypothetical protein TERM 895 1111036 - 1111023 - R 73 -5.2 -4.57569 | opp_overlap 1111023 GCAGGGGGCGAAAAA GGGC GCATAA GCCC TTTGCGGTGACGATC TERM 896 1111251 - 1111236 - R 91 -11.8 -4.208 | opp_overlap 1111233 1111229 TGCCAAAAGCACAAA GCGCCC CGTA GGGCGC TAATGCATTGTAATA RD1_1149 1112258 - 1111422 - | glycosyltransferase, putative TERM 897 1112038 - 1112064 + g 83 -4.5 -5.0538 | gap 2, overlap 1112024 1112045 ACCGGCGCCCAGAGC CGCGATTTGGGCC ACT GGC-CA-ATCGTG TTTTTTGGCATGAAC pqqE 1113428 - 1112322 - | pyrroloquinoline quinone biosynthesis protein PqqE pqqD 1113700 - 1113425 - | coenzyme PQQ synthesis protein D TERM 898 1113738 - 1113725 - R 70 -9.5 -3.38812 | overlap 1113723 CCCTTTGTAACAATA GCCCG TCGC CGGGC ACCCAAGCCCCGGGC pqqC 1114451 - 1113702 - | pyrroloquinoline quinone biosynthesis protein PqqC pqqB 1115346 - 1114453 - | pyrroloquinoline quinone biosynthesis protein PqqB TERM 899 1115379 - 1115403 + r 74 -10.7 -3.51076 | opp_overlap 1115379 1115377 GATATGTTTAGAACA GGTCGTCGCGG TCG TCGTGACGATC TTCGTTCTCTGGTCC pqqA 1115478 - 1115371 - | coenzyme PQQ synthesis protein A prrA 1116262 - 1115576 - | transcriptional regulatory protein PrrA, putative resE 1117958 - 1116267 - | sensor protein resE, putative TERM 900 1117911 - 1117881 - G 91 -14 -3.83026 | gap 1, opp_overlap 1117893 1117896 GCTGCGGACACGAAA CACGCCGGCGGCG GGTGCA CGCC-CCGGCGCG CATGCTGTCTTAACG RD1_1157 1118006 - 1118209 + | hypothetical protein RD1_1158 1119011 - 1118220 - | ABC transporter, permease protein, putative TERM 901 1118991 - 1118967 - G 76 -5.5 -4.67904 | overlap 1118958 1118968 1118969 1118981 1118982 CACGAAGCGTAAAAA TTCGCGCCCCA CAA TGGCGCGCGTC ACGCCCCAGAATCCG RD1_1159 1119727 - 1119008 - | ABC transporter, ATP-binding protein, putative TERM 902 1119971 - 1120007 + r 74 -6.6 -4.3623 | gap 1, overlap 1119972 1119973 TGACGGAATGTGTCG TGGCGTTGCGCAGGTTC TTCA GAAC-TGCACAACGCGG TTTAGTTTTTACTCT mclA 1121024 - 1120047 - | malyl-CoA lyase RD1_1161 1121486 - 1122724 + | aminotransferase, putative TERM 903 1123198 - 1123175 - g 78 -7.4 -4.60924 | gap 1, opp_overlap 1123174 1123175 GAAATCTCTGAAAAA CGCCCCGAAAG CAT CGTTCGGG-CG ATTGTGGAGCCTGCC sucC 1122758 - 1123957 + | succinyl-CoA synthetase subunit beta mtkB 1123954 - 1124841 + | succinyl-CoA synthetase subunit alpha gyaR 1124841 - 1125812 + | glyoxylate reductase glyA 1125851 - 1127140 + | serine hydroxymethyltransferase TERM 904 1127161 - 1127185 + F 100 -15 -4.96848 | CATTCTAACGCCGGG CGCGCAGGGT TATTC GCCCTGCGCG TTTTTCTGTCGCGCC TERM 905 1127195 - 1127213 + F 73 -8.8 -3.90744 | TGCGCGTTTTTCTGT CGCGCCAT CGT ATCGCGCG TTGTTTCCAAAGCGC TERM 906 1127334 - 1127392 + F 77 -8.3 -4.07687 | gap 2, opp_overlap 1127334 1127335, overlap 1127335 1127344 GAAGTACCTGAAACA TCGAGTATCTCGCAACG-CG-TTGAAATC TTT GATTTCAAGCGGCGTTGCGTGATTCAGGG TTTTCGCACGACGCT TERM 907 1127344 - 1127382 + F 83 -14.9 -2.75229 | gap 2, opp_overlap 1127335 1127334, overlap 1127335 1127334 AAACATCGAGTATCT CGCAACG-CG-TTGAAATC TTT GATTTCAAGCGGCGTTGCG TGATTCAGGGTTTTC RD1_1166 1127593 - 1128129 + | DnaJ domain-containing protein TERM 908 1128503 - 1128489 - g 70 -3.4 -4.60487 | opp_overlap 1128500, overlap 1128490 1128491 CATCACGCCGAAAAA GGCACG GGT CGCGAC CGAGCGGTTGTTCGT RD1_1167 1128427 - 1128690 + | hypothetical protein TERM 909 1129039 - 1129051 + T 70 -6.9 -4.09805 | opp_overlap 1129032, overlap 1129032 CTGCGAAAGCGATCC GCCGG ATG CTGGC TTTGGTTCTTGCTGC TERM 910 1129463 - 1129473 + T 78 -6.8 -4.60746 | GCGCCCGTCGTGTAT TCCG TTG CGGA TTTTACTGTTTTTGG mcpA 1132295 - 1129920 - | methyl-accepting chemotaxis protein, putative TERM 911 1131239 - 1131255 + g 84 -11.5 -4.08767 | overlap 1131219 CTTCGAGATCGAGGT CGCGTGC TTT GCGCGCG TTTTCGAGGAATACA TERM 912 1132095 - 1132122 + g 80 -3.5 -5.02502 | gap 1, overlap 1132096 GATGGACGCAACATG CCCTGACAAATC AGTCA GGTTT-TCGGGG TTTTTGTCTGATCTG TERM 913 1132096 - 1132113 + g 71 -7 -4.20883 | overlap 1132095 ATGGACGCAACATGC CCTGAC AAATCA GTCAGG TTTTCGGGGTTTTTG RD1_1169 1133445 - 1132531 - | LysR family transcriptional regulator RD1_1170 1133539 - 1133766 + | hypothetical protein TERM 914 1133994 - 1133970 - T 72 -2.6 -4.87133 | opp_overlap 1133972, overlap 1133971 1133972 ATCCGCGAAAGAAAA GTGGCCGGCG TAGGT CGCGGGCCTT TGGTGCCCACCACGC TERM 915 1133972 - 1133992 + T 74 -9.6 -3.72576 | opp_overlap 1133972 1133971 1133970 CCGCGAAAGAAAAGT GGCCGGCG TAGGT CGCGGGCC TTTGGTGCCCACCAC TERM 916 1134001 - 1134037 + T 100 -14.5 -4.62069 | gap 1, overlap 1133999 GCGGGCCTTTGGTGC CCACCACGCG-GGCTC TGTGTT GAGCGGCGCGTGGTGG TTTTTCAGGTCAAGG RD1_1171 1135694 - 1134060 - | type I secretion target repeat-containing protein TERM 917 1136216 - 1136238 + r 84 -9 -4.28254 | opp_overlap 1136207 1136206 CGAAACCGCCATCGG CGAGGCCGAC CAC GACGGGCTCG TTTTGAATGTTCGGC RD1_1172 1137876 - 1137610 - | hypothetical protein RD1_1173 1138553 - 1137873 - | hypothetical protein RD1_1174 1139695 - 1138634 - | Rieske (2Fe-2S) domain-containing protein RD1_1175 1140069 - 1139692 - | hypothetical protein TERM 918 1140181 - 1140161 - H 83 -7.6 -4.56597 | gap 1, overlap 1140176 GCTTTCCGCCAAAAA CACCTGGTC AAGG GACC-GGTG CCCTGGTCACATGAG TERM 919 1141048 - 1141078 + G 76 -5.3 -4.59773 | AAGGATCTCGAAGTG CTTGGGGCGTCGG AGGAA CTGCCGCTTCAGG TTTTTGGCGATCAGG TERM 920 1141253 - 1141308 + G 77 -8.1 -4.4009 | gap 1, opp_overlap 1141248 1141247 CGATCATAACCGCCT CCAGCCCGGAAGGCGCGCGCGATTTC CTTGT GCCATCGCGTTTG-CATCCGGGCCGG TTTTATGCGCTGCCG TERM 921 1141730 - 1141702 - g 72 -11.7 -3.36273 | CTTCTGGAACAGGAA GGCACAGAGATCA GGG CGATCCCCGCGCC GGGTGGCGGCAGCCG TERM 922 1141911 - 1141926 + G 70 -3.9 -4.72272 | opp_overlap 1141900 GCAACTGGGCCTTGG CGTCG GGGATG CGGCG TTTTTCCTCGGCGGC aspS 1140739 - 1142514 + | aspartyl-tRNA synthetase RD1_1177 1142552 - 1143274 + | acetyltransferase, putative RD1_1178 1144006 - 1143287 - | response regulator, putative TERM 923 1144457 - 1144447 - g 91 -8.2 -4.82901 | CTTCCTTGATAAAAA CCCC GCA GGGG GCATTCACCATGTCT RD1_1179 1144232 - 1144636 + | hypothetical protein TERM 924 1144826 - 1144814 - gT 74 -5.5 -4.57569 | TGACGTCGGGAAAAA GGCGA AAA TCACC ACGGTGCTCAGCCTT RD1_1181 1145610 - 1144891 - | hypothetical protein RD1_1180 1144659 - 1144955 + | hypothetical protein TERM 925 1145389 - 1145371 - GT 72 -3 -4.77438 | overlap 1145382 1145383 AGGGATCATCAAAAA GATCGACA ATA CGGCGACC GCGACGAAAGCCCCC RD1_1182 1146185 - 1145607 - | nitroreductase family protein TERM 926 1145969 - 1146008 + g 76 -6.3 -4.66163 | gap 1 GCCCCAAGGCCTCCC CCCGCCGCTGCGCGATCT CTGCC AGA-CGCGCCATGGCCGG TTTTTCGATCACAAT RD1_1183 1147300 - 1146200 - | histone deacetylase family protein trpS 1148438 - 1147425 - | tryptophanyl-tRNA synthetase RD1_1186 1148486 - 1149205 + | rhomboid family protein mviN 1150745 - 1149180 - | virulence factor MviN-like protein glnD 1153549 - 1150742 - | PII uridylyl-transferase TERM 927 1151488 - 1151500 + g 84 -10.5 -4.2349 | AATCGCTGAGTACGT CGCGC AGC GCGCG TTTTGCCTCTGCCCC RD1_1189 1154699 - 1153530 - | hypothetical protein RD1_1190 1154785 - 1155642 + | tetrapyrrole methylase domain-containing protein RD1_1191 1155639 - 1156028 + | hypothetical protein gshB 1156204 - 1157145 + | glutathione synthetase RD1_1193 1158649 - 1157150 - | Mg chelatase-related protein RD1_1194 1159412 - 1158729 - | hypothetical protein RD1_1195 1160053 - 1159472 - | phosphoglycerate mutase, putative cobP 1160571 - 1160050 - | bifunctional adenosylcobalamin biosynthesis protein cobP TERM 928 1160415 - 1160425 + g 75 -2.6 -4.88646 | GATGGTCGCGACGCT TTTT ATG AAAA TTTATTTTGATTTTT rpoH2 1160669 - 1161547 + | RNA polymerase factor sigma-32 TERM 929 1161794 - 1161773 - g 78 -6.5 -4.58395 | overlap 1161777 1161786 CGCAGGCGTCAAAAA TCACCCCTG ACAA CAGGGTCGA TCAGGCCACCCTGGG TERM 930 1161832 - 1161845 + G 72 -2.3 -4.74453 | opp_overlap 1161832 CTGGACTGGCAAGCA TCCGG TTGG CCCGA TTTTTCAATGTATTA TERM 931 1161874 - 1161892 + G 76 -5.8 -4.60487 | overlap 1161875 1161886 TATCCGATATTTGCC GCAGCGCC CGA GGCGCCGG TTTTTGGCGCTGGTG TERM 932 1162190 - 1162212 + G 71 -8.4 -4.08144 | gap 1, overlap 1162188 CCGGCAATGGCCATG C-GCGCGCC GATTGG GGCGCGCCG TTTATCCTTGGTCAA RD1_1198 1161547 - 1162359 + | hypothetical protein TERM 933 1163310 - 1163297 - g 74 -3.1 -4.75309 | gap 1, overlap 1163298 1163300 1163301 GCAAACTGAAGAAAA CGAGCG GCG CGCT-G CCGGTGCTGACCTTT coaBC 1162429 - 1163622 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase dut 1163631 - 1164089 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 934 1164713 - 1164697 - g 72 -11.5 -3.28712 | opp_overlap 1164685 GGTGCGCCCCTACAA CCGCCGC CTG ACGGCGG ATATCGCGGATGCGT moeB 1164089 - 1165150 + | molybdopterin biosynthesis protein MoeB, putative TERM 935 1166240 - 1166228 - g 73 -4.7 -4.60487 | TATTACGCTGAAAAA CGGCG CGC CGCAG AACACGATCTGGATG dcp 1165211 - 1167226 + | dipeptidyl carboxypeptidase, putative RD1_1204 1168162 - 1167230 - | 2-hydroxyacid dehydrogenase, putative rodA 1169322 - 1168183 - | rod shape-determining protein TERM 936 1168796 - 1168784 - G 80 -10.5 -4.04579 | GCCAGAAACATCAAA CCGCC CCC GGCGG CCAGCAGCAGAATTG TERM 937 1169340 - 1169361 + r 77 -7.3 -4.26634 | gap 1, overlap 1169344 1169356 CTGATCCCGCCCGCT GATAGCGGCC TGT GGCTGC-ATC TTTTGCAATTCTTTT pbpA 1171262 - 1169319 - | penicillin-binding protein 2 TERM 938 1169472 - 1169502 + g 80 -14.7 -3.03124 | gap 1, overlap 1169490 1169492 GATATCGCGGGCAAT CGG-GGCGGCGGCT TTCG ACCCGCCGCCGCCG TGTTCGACGATAACG TERM 939 1169492 - 1169526 + g 73 -9.8 -3.64716 | opp_overlap 1169516, overlap 1169472 1169490 CGGCGGCTTTCGACC CGCCGCCGCCGTGTTC GAC GATAACGGCCACGGCG TATTTTGGGCGGTCA TERM 940 1169745 - 1169763 + g 93 -14.6 -3.90241 | opp_overlap 1169742 GACGGCAAACATGGC CCTGCGCA TCT TGCGCAGG TTGTTCTCATTCATA mreD 1171833 - 1171294 - | MreD protein TERM 941 1171799 - 1171779 - G 71 -7.5 -4.17416 | overlap 1171782 AGATGACACAAACAA TGAGGCCGA ACA TCAGCCGCA TACCCCAGACGCGCG mreC 1172714 - 1171830 - | rod shape-determining protein TERM 942 1172680 - 1172664 - G 71 -9.3 -3.72324 | GATGCTGATCAATAA CCGGCGC AGC GGGCCGG TAAAGTCGTTTGCGT mreB 1173877 - 1172789 - | rod shape-determining protein, putative RD1_1210 1174845 - 1174009 - | amino-acid ABC transporter, periplasmic binding protein TERM 943 1174941 - 1174907 - R 77 -3.6 -5.00895 | gap 1, opp_overlap 1174907 1174910 1174912 1174914, overlap 1174912 CCTAGCAGATAAAAA TAGAAGTTACCGCCG GAAAAT CGGCGGTATC-TGTA TTTTATCGCACCTCG TERM 944 1174910 - 1174939 + r 71 -8.5 -3.79687 | opp_overlap 1174907 1174912, overlap 1174907 1174912 1174914 AGCAGATAAAAATAG AAGTTACCGCCGG AAAA TCGGCGGTATCTG TATTTTATCGCACCT TERM 945 1174937 - 1174912 - R 86 -10.4 -4.16226 | opp_overlap 1174910 1174907 1174912 1174914, overlap 1174907 CAGATAAAAATAGAA GTTACCGCCG GAAAAT CGGCGGTATC TGTATTTTATCGCAC TERM 946 1174912 - 1174937 + r 77 -11.1 -3.48115 | opp_overlap 1174912 1174907, overlap 1174910 1174907 1174914 CAGATAAAAATAGAA GTTACCGCCGG AAAA TCGGCGGTATC TGTATTTTATCGCAC TERM 947 1174914 - 1174935 + r 78 -12.3 -3.30825 | opp_overlap 1174912 1174907, overlap 1174912 1174910 1174907 GATAAAAATAGAAGT TACCGCCGG AAAA TCGGCGGTA TCTGTATTTTATCGC leuA 1176546 - 1174978 - | 2-isopropylmalate synthase TERM 948 1175253 - 1175267 + g 71 -8.5 -4.09822 | opp_overlap 1175253 TGAAGGACGCATCAA CCGGG CCGTC CCCGG TTTGTGTGGTGGATT TERM 949 1176774 - 1176787 + H 70 -9.5 -3.36878 | TGCGCCGGGGTTGAA GGCGC GCTT GCGCC TTCTAGGTCGCTGAG TERM 950 1177405 - 1177433 + G 85 -9.5 -4.62069 | overlap 1177406 1177407 TGTTGCGCGTCGTCG ATGGCTTGTCTGC GGC GCAGACGGGCCGG TTTTTCGACTGGGCA TERM 951 1177406 - 1177432 + G 76 -13 -3.3692 | overlap 1177405 1177407 GTTGCGCGTCGTCGA TGGCTTGTCTGC GGC GCAGACGGGCCG GTTTTTCGACTGGGC TERM 952 1177407 - 1177431 + G 76 -14.3 -2.61831 | overlap 1177406 1177405 TTGCGCGTCGTCGAT GGCTTGTCTGC GGC GCAGACGGGCC GGTTTTTCGACTGGG csgA 1176804 - 1177469 + | C factor, cell signaling protein, putative TERM 953 1177618 - 1177606 - g 70 -3.4 -4.63527 | opp_overlap 1177606 GCACCACCCGAAAAA GATC GCATT GATC TTTGCGGCCATGCGG RD1_1213 1177466 - 1178992 + | hypothetical protein RD1_1214 1180391 - 1179003 - | MORN repeat-containing protein TERM 954 1180047 - 1180034 - G 73 -9.5 -3.85698 | CGCCGTTTGCATAAA GCGCG ATGC CGCGC CCCATGATCGCGCCA TERM 955 1180461 - 1180471 + H 77 -8.2 -4.08767 | overlap 1180460 CAATGGGCCGGGCAG GGGC AAC GCCC TTTTGCCGCAATAGG TERM 956 1181245 - 1181263 + G 79 -8.8 -4.18018 | AACCCCGGCGGCAAT CTGGCGGT GCA ACTGCCGG TTTTCGATGAGGCGG nadE 1180567 - 1182225 + | NAD synthetase RD1_1216 1182331 - 1183140 + | hypothetical protein TERM 957 1183153 - 1183125 - T 95 -13.1 -4.20696 | overlap 1183126 GGAGCAATTGCAAAA GGCAGGGCAGCTG TAA CAGCCACCCTGCA CTAGGCTCAGAGCAT TERM 958 1183152 - 1183126 - T 100 -16.6 -3.11936 | overlap 1183125 GAGCAATTGCAAAAG GCAGGGCAGCTG TAA CAGCCACCCTGC ACTAGGCTCAGAGCA RD1_1217 1184089 - 1183160 - | metallo-beta-lactamase family protein, putative RD1_1218 1184222 - 1184109 - | hypothetical protein gltX 1184266 - 1185591 + | glutamyl-tRNA synthetase TERM 959 1185704 - 1185727 + GT 81 -5.4 -4.84359 | gap 1, overlap 1185709 GGTTGATGGCGATTT TCGTGGTCGAT TTC ATCGAC-ATGA TTTTTATCGCGATGC TERM 960 1185757 - 1185792 + GT 80 -3.1 -5.02476 | gap 1, overlap 1185759 1185761 CTGGGCAAGGCGGAA CTG-GCCGCCGCCGTG GGCTA TGCGGCGACGGTGCTG TTTTTTACCACGTCT TERM 961 1186818 - 1186830 + GT 89 -9.1 -4.56597 | GATCCCTCTTGTGCT GCTGG GGT CCAGC TTTTTCGGAGCGCAG RD1_1221 1187553 - 1186963 - | hypothetical protein RD1_1220 1185667 - 1187016 + | MATE efflux pump protein TERM 962 1188021 - 1188037 + G 79 -9.3 -4.2349 | AGAGCATCTGCACAC GCGCGGC CGT GCCGGGC TTTTCGATGTCAGCC TERM 963 1188694 - 1188673 - g 73 -8.7 -3.91897 | opp_overlap 1188677 1188683 1188690 TGGGCCATTCAGAAA GTGCGCC GTCCCGGT GGCGCAC GCGCTGGCGGCTTTC TERM 964 1188797 - 1188760 - g 74 -6.7 -4.36914 | opp_overlap 1188783 GGCCCGGCGACAAAA CGCGTCGGATTGCGCCC CGAA GGGCGCGCGCCCATGCG TCAGGGCGTGGCGCT gcvT 1187893 - 1189017 + | aminomethyltransferase gcvH 1189035 - 1189394 + | glycine cleavage system H protein gcvP 1189446 - 1192295 + | glycine dehydrogenase RD1_1226 1194858 - 1192342 - | ABC transporter, permease protein, putative TERM 965 1194168 - 1194181 + g 78 -4.5 -4.7629 | overlap 1194151 1194169 1194178 CGGTTTCGGCAAAGG TGAGG GCGG CCTCG TTTTTGAGTTGCTCA RD1_1227 1195544 - 1194855 - | ABC transporter, ATP-binding protein, putative TERM 966 1195856 - 1195881 + G 76 -9 -4.08692 | AAAGGTGGATGCGAT GATCGTGGCC CTTGGC GGCAACGATC TTTTGCGCGGGATTG RD1_1228 1195596 - 1196234 + | putative acyl-CoA thioesterase TERM 967 1196273 - 1196254 - T 100 -12.8 -5.18371 | CGCTACAAAAGAAAA CGGGCGCC GGAA AGCGCCCG AATGACCCGCTAAAA cspA 1196502 - 1196296 - | cold shock protein CspA TERM 968 1196535 - 1196524 - R 83 -5.8 -4.86731 | overlap 1196525 GTCTCCTAAAGAAAA CCTG CCCG CAGG ATGCGGCAGCGCGGT TERM 969 1196677 - 1196688 + r 81 -2.2 -5.38054 | AGTTATTTCTTTTGT CGTC GCCG GATG TTTTTGTTTATGGGC TERM 970 1196711 - 1196723 + r 74 -4.7 -4.80178 | opp_overlap 1196710 1196711, overlap 1196710 1196712 TTATGGGCAAGTAAC CGCCG GAG CGGCA TTTTATTGGTTCATG RD1_1230 1197370 - 1196882 - | hypothetical protein RD1_1231 1197756 - 1198019 + | hypothetical protein TERM 971 1198070 - 1198051 - T 76 -9.3 -3.96705 | opp_overlap 1198051 CGTACAAAATGCAAA GTCGGCA TGTGAT TGCCGAC TTTTTTGTCAAAGTT TERM 972 1198051 - 1198070 + T 100 -9.3 -5.25803 | opp_overlap 1198051 CGTACAAAATGCAAA GTCGGCA TGTGAT TGCCGAC TTTTTTGTCAAAGTT cspA 1198299 - 1198093 - | cold shock protein CspA RD1_1233 1198534 - 1198421 - | hypothetical protein TERM 973 1198670 - 1198692 + r 100 -11.3 -5.28176 | opp_overlap 1198670, overlap 1198661 GTCTTTTCAACTCAA CGGGTCGAT CTTGT ATCGGCCCG TTTTTTCTGCGTCAG RD1_1234 1199289 - 1198762 - | outer membrane lipoprotein TERM 974 1199365 - 1199353 - H 84 -9.1 -4.2349 | TTGCGACAGGCAAAA GTGCC ATC GGCAC AGGGTCGGCACGGCG RD1_1235 1199466 - 1199855 + | hypothetical protein RD1_1236 1199866 - 1200423 + | hypothetical protein RD1_1237 1203513 - 1201858 - | putative ABC transporter ATP-binding protein TERM 975 1203198 - 1203214 + g 85 -6.5 -4.82901 | overlap 1203199 TCGCCAGTTCGTTGT AGCGATC AAG GATCGCC TTTTTGTCCGCCACG TERM 976 1203199 - 1203213 + g 70 -10 -3.49419 | overlap 1203198 CGCCAGTTCGTTGTA GCGATC AAG GATCGC CTTTTTGTCCGCCAC RD1_1238 1203665 - 1203772 + | hypothetical protein RD1_1239 1203769 - 1203939 + | hypothetical protein RD1_1240 1204107 - 1205396 + | hypothetical protein RD1_1242 1205398 - 1205886 + | MOSC domain-containing protein TERM 977 1206358 - 1206385 + G 76 -6.8 -4.56597 | opp_overlap 1206357 CCGGGCGACAGAATC CCGGCGCGGATG AGCC CGGCTGCGGCGG TTTTTGGCCGCGCGC TERM 978 1206438 - 1206455 + G 78 -6.9 -4.65916 | overlap 1206438 GCTTTTGGGACGTGC CGCCGCG CCGG CGTGGTG TTTTGTTAACGTCCC nadD 1205923 - 1206522 + | nicotinic acid mononucleotide adenylyltransferase dacB 1206605 - 1208104 + | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase RD1_1245 1208574 - 1208152 - | hypothetical protein TERM 979 1209663 - 1209652 - g 71 -7.2 -4.2828 | TTTCATGTACCAAAA GCCG AAGA CGGC CAAGCGCATGTATTT lysK 1208693 - 1210276 + | lysyl-tRNA synthetase RD1_1247 1210337 - 1210738 + | hypothetical protein RD1_1248 1211452 - 1210745 - | hypothetical protein RD1_1249 1211593 - 1211823 + | hypothetical protein RD1_1250 1212418 - 1211993 - | hypothetical protein TERM 980 1212078 - 1212062 - G 75 -7.9 -4.18197 | opp_overlap 1212062 ATCGCTGAGCGAAAA GCGCACC GTC GCTGCGC CCAGTGTTGCGGTTG TERM 981 1212493 - 1212466 - R 71 -10.5 -3.2964 | gap 1, overlap 1212467 AAATGCTGCGCAGAA TGGGCCGG-GGC TTTGC GCCGCCGGCCCT TGCAATGTCAACGCT TERM 982 1212492 - 1212467 - R 81 -14 -2.57463 | gap 1, overlap 1212466 AATGCTGCGCAGAAT GGGCCGG-GGC TTTGC GCCGCCGGCCC TTGCAATGTCAACGC RD1_1251 1213018 - 1212509 - | hypothetical protein TERM 983 1212992 - 1212973 - G 74 -5.7 -4.57073 | gap 1, overlap 1212974 1212975 CACCGGTGGCAAAAA CGGCCGTG GCAAT CACGGC-G ATGGAGCGGGTGGAG RD1_1252 1213604 - 1213116 - | hypothetical protein RD1_1253 1214165 - 1213647 - | hypothetical protein TERM 984 1214006 - 1214021 + g 76 -6.1 -4.70659 | opp_overlap 1213990 1214006 1214005 GCCCTTTCCGAAAAG CAGGG GGAATG CCCTG TTTTTGAGTGTGGCA TERM 985 1214340 - 1214350 + r 81 -8.2 -4.30034 | opp_overlap 1214336, overlap 1214336 CCGCTAGTAGACAGT GCGG CCA CCGC TTTTGCTAAGGTTTT uvrB 1217020 - 1214822 - | excinuclease ABC subunit B TERM 986 1214897 - 1214911 + g 70 -3.5 -4.62783 | overlap 1214874 GCCTGAGGCTTTGGC GCTGT CTTCC ACGGC TTTTTCCACTGCATA TERM 987 1214933 - 1214977 + g 71 -9.2 -3.78329 | overlap 1214960 CACTGCATACTGACG CGCCATGGGGTCGTCGGC GATGGCGAG GTCGACGGCTTCGAGGCG TTTGACTTCGTCGCG TERM 988 1215107 - 1215133 + g 78 -10.1 -3.85698 | CTTGTCGATCTTGGC GGTGACGCGGG ATTGG TCCGTGTCGCC TTTGTAAAGCCCGGC TERM 989 1215142 - 1215167 + g 73 -4.5 -4.63542 | opp_overlap 1215142, overlap 1215145 TGTCGCCTTTGTAAA GCCCGGCGAGG ATAT CCTCGACGTTC TTTTTCACCGTTGTC TERM 990 1215145 - 1215164 + g 82 -9.2 -4.42235 | opp_overlap 1215142, overlap 1215142 CGCCTTTGTAAAGCC CGGCGAGG ATAT CCTCGACG TTCTTTTTCACCGTT RD1_1255 1217303 - 1217614 + | NADH-ubiquinone oxidoreductase 18 kDa subunit RD1_1256 1217720 - 1217619 - | hypothetical protein cpdB 1220253 - 1218382 - | 2`,3`-cyclic-nucleotide 2`-phosphodiesterase RD1_1259 1220393 - 1221361 + | hydrolase, putative RD1_1260 1221466 - 1221933 + | hypothetical protein pheA 1222772 - 1221915 - | prephenate dehydratase, putative TERM 991 1223049 - 1223034 - g 73 -10.4 -3.6715 | TGATCGAAGTCGAAA GCGGTG AAGA CACCGC CGAAGTGGAAGAAGT cycM 1222892 - 1223395 + | cytochrome c552 TERM 992 1223444 - 1223421 - f 87 -13.8 -3.23152 | opp_overlap 1223421, overlap 1223413 ACACCAATTGATCAA GCCGCGTGCA TCTC TGCCCGCGGC TTTTTTATTCTTTGC TERM 993 1223421 - 1223444 + F 100 -13.8 -5.72254 | opp_overlap 1223421 1223413 ACACCAATTGATCAA GCCGCGTGCA TCTC TGCCCGCGGC TTTTTTATTCTTTGC RD1_1263 1223579 - 1225510 + | ABC transporter, periplasmic substrate-binding protein, putative TERM 994 1225811 - 1225797 - g 73 -9.2 -3.85698 | opp_overlap 1225797 TTCGGTTTTGACAAA CCGCCC GTT GAGCGG TTCCTGAACATGATC RD1_1264 1225515 - 1226606 + | peptide ABC transporter, permease protein, putative RD1_1265 1226610 - 1227788 + | ABC transporter, permease protein, putative RD1_1266 1227785 - 1229365 + | peptide ABC transporter, ATP-binding protein, putative hemN 1230827 - 1229472 - | coproporphyrinogen III oxidase TERM 995 1231383 - 1231366 - g 84 -5.5 -5.0133 | opp_overlap 1231344 1231366, overlap 1231353 CAGCGCGCGAAAAAA TCGCCAG CCTG CTTGCGA TTATTGCCCGGCGCG fnrL 1230891 - 1231634 + | transcriptional activator protein FnrL RD1_1269 1232492 - 1231656 - | universal stress family protein, putative ccoN 1232700 - 1234313 + | cytochrome c oxidase, cbb3-type, subunit I ccoO 1234328 - 1235053 + | cytochrome c oxidase, cbb3-type, subunit II ccoQ 1235066 - 1235251 + | cytochrome c oxidase, cbb3-type, subunit IV TERM 996 1235627 - 1235639 + G 74 -6.9 -4.41548 | CGCAGTGTCACGGTT CCGGT GCC GCCGG TTTTGTGGGCTATCC ccoP 1235248 - 1236114 + | cytochrome c oxidase, cbb3-type, subunit III TERM 997 1236140 - 1236171 + F 100 -17.4 -3.32963 | opp_overlap 1236139 1236138 1236137 1236159 1236160 CGTCACGAAAAAGCG GGCGCGGTTTTGAT GCAA ATCAAGGCCGCGCC TTATGCAATCAGACT rdxB 1236222 - 1237658 + | RdxB protein rdxH 1237655 - 1238119 + | RdxH protein rdxI 1238116 - 1240305 + | RdxI protein rdxS 1240302 - 1240463 + | RdxS protein dacA 1242121 - 1240664 - | D-alanyl-D-alanine carboxypeptidase family protein TERM 998 1242147 - 1242169 + H 77 -8.5 -4.16842 | gap 1, overlap 1242150 TTTTTTCTGCCTCAT GTC-GCCGAA TTTT TTCGGCTGAC TTTATTGGCGCTGAC clpS 1242515 - 1242856 + | ATP-dependent Clp protease, putative TERM 999 1243192 - 1243177 - g 78 -2.4 -5.03314 | overlap 1243178 TTGACGGTCAAAAAA CCGACG GTAT CGACAG CATTCTGCGGGACAT rsmC 1242906 - 1243856 + | ribosomal RNA small subunit methyltransferase C, putative RD1_1281 1243881 - 1244681 + | oxidoreductase, putative hemF 1244756 - 1245649 + | coproporphyrinogen III oxidase TERM 1000 1245699 - 1245660 - T 100 -20.9 -3.6682 | gap 2, opp_overlap 1245667 1245668 TGTGATGCAGTGAAA CTGCCCCGGCGCGATGCCC TTTA GGG-ATCGCGCCGGGG-AG TGAGATACATGGGCT hemC 1246753 - 1245809 - | porphobilinogen deaminase hemE 1246857 - 1247891 + | uroporphyrinogen decarboxylase dctP 1248177 - 1249214 + | C4-dicarboxylate-binding periplasmic protein RD1_1287 1249272 - 1249844 + | hypothetical protein TERM 1001 1250566 - 1250581 + G 76 -6.1 -4.63527 | GCTTTGGGGGCGACA TGGCC TGTGCT GGCCA TTTTTGGCGTGGTCG TERM 1002 1250726 - 1250771 + G 77 -3.3 -4.92783 | gap 2, overlap 1250741 AATGCCTCTTGGGGA CGGGCCGCACGACCGCGATGA TCTTTT TCATCGTG-TTGGG-GGCCAG TTTTTATAATGGATT TERM 1003 1250928 - 1250940 + G 70 -3.3 -4.60487 | GTCGATGATCCTGCT GACCG TTC CGATC TTTTTCCCGGTAATC TERM 1004 1251176 - 1251189 + G 71 -8.1 -4.05714 | TGTTGGTCGCGTTTC CAGCG ATTA CGCTG TTTCTAATTCCCGCT dctM 1249852 - 1251207 + | TRAP dicarboxylate transporter, permease component TERM 1005 1251491 - 1251433 - f 81 -8.6 -4.371 | opp_overlap 1251437, overlap 1251435 GCCAGCAGACGAAAA CGCGCCGTCATGGTACTGACGGGCCTGA GAG CCAGACCCGTCGGTGCCAGTACGGTTTG CATCTTTTCTACGGA TERM 1006 1251437 - 1251487 + F 100 -18.3 -3.8679 | opp_overlap 1251435 1251433 GCAGACGAAAACGCG CCGTCATGGTACTGACGGGCCTG AGAGC CAGACCCGTCGGTGCCAGTACGG TTTGCATCTTTTCTA RD1_1289 1251554 - 1252009 + | hypothetical protein RD1_1290 1252520 - 1252029 - | hypothetical protein TERM 1007 1252580 - 1252556 - R 100 -11.4 -5.31275 | opp_overlap 1252555 1252556 CGCGATCACAAAAAA GGGGCCACAC TCATG GCATGGCCCC GTTGTTTGATGGATG RD1_1291 1254259 - 1252598 - | dipeptide ABC transporter, putative TERM 1008 1254771 - 1254786 + r 70 -3.2 -4.70879 | overlap 1254772 TGCCGCGCGCACAGG CTCCCT TTGA AGGGAC TTTTTCAGCTTTGCG RD1_1292 1256206 - 1254791 - | hypothetical protein RD1_1293 1257300 - 1256203 - | cytosine deaminase, putative TERM 1009 1257713 - 1257675 - g 79 -12.4 -3.51365 | opp_overlap 1257675 1257678 TCACATGGCATAGAA TTGCCCGCAGGCGCGC GTCTTCT GCGCACCTCGGGGCAA TTGGGTCAGGATGGG RD1_1294 1257612 - 1258001 + | L-PSP family endoribonuclease RD1_1295 1258413 - 1258180 - | hypothetical protein RD1_1296 1258666 - 1258382 - | hypothetical protein TERM 1010 1258626 - 1258638 + gr 74 -6.9 -4.37658 | TGGTTGGTCGTTACT GTGCG GAT CGCGC TTTTCTGCCCAGATT RD1_1297 1258956 - 1258840 - | hypothetical protein TERM 1011 1259413 - 1259433 + G 84 -6.1 -4.92783 | overlap 1259414 TTCAGGCGGTTGCGC TGACATCCG TGG CGAATGTCG TTTTTATCATCGCTT TERM 1012 1259939 - 1259961 + G 77 -8.4 -4.34402 | opp_overlap 1259915 CTATGCCCTTGCCGG GGGTGCCA TCGTTAT TGGCGCCC TTTTGGTGTCAAACA RD1_1298 1259145 - 1260029 + | transmembrane protein, putative RD1_1299 1260795 - 1259986 - | chromosome partitioning protein TERM 1013 1260196 - 1260211 + g 70 -4.7 -4.56133 | TTTGGACAGGTTGGC GATGG CGCGTT CCATC TTTTCCTTGTTGACC TERM 1014 1260920 - 1260970 + r 77 -8.5 -4.09628 | gap 2, opp_overlap 1260919 1260918 1260917 1260926, overlap 1260923 TCATGCGAAAAACCT GAATCACGCAACGCTGCCTGAAATC AAA GATTTCAA-C-GCGTTACGTGATAC TTCTTGTTTCAGGTA RD1_1300 1261373 - 1261044 - | hypothetical protein TERM 1015 1261406 - 1261433 + rH 95 -14.8 -3.7319 | opp_overlap 1261408, overlap 1261408 ATGTTGCATGAAAAA AAGCCCGGCGCC TGAG GGTGCCGGGCTC TTGTATCTTATACGT TERM 1016 1261431 - 1261408 - RH 100 -15.2 -5.52384 | opp_overlap 1261406 1261408 GTTGCATGAAAAAAA GCCCGGCGCC TGAG GGTGCCGGGC TCTTGTATCTTATAC TERM 1017 1261408 - 1261431 + rH 100 -17.4 -3.44149 | opp_overlap 1261408, overlap 1261406 GTTGCATGAAAAAAA GCCCGGCGCC TGAG GGTGCCGGGC TCTTGTATCTTATAC RD1_1301 1261632 - 1261441 - | hypothetical protein RD1_1302 1261631 - 1261948 + | hypothetical protein nas 1263047 - 1262010 - | zinc metalloproteinase nas-13 precursor, putative TERM 1018 1263268 - 1263243 - R 100 -14.7 -5.28778 | overlap 1263259 ATTACGCACAAAAAA GAGGCCGCGCC GTAA AGCGCGACCTC GGGACATGCAAAAAA rpmE 1263515 - 1263294 - | 50S ribosomal protein L31 rplS 1263910 - 1263527 - | 50S ribosomal protein L19 TERM 1019 1263567 - 1263583 + g 71 -8 -4.07687 | TTGTAATTCGTGTTT TCCGCA ATCCG TGCGGA TTTTCCGCGGCGGCT RD1_1306 1264600 - 1264181 - | hypothetical protein TERM 1020 1264768 - 1264753 - R 72 -11.8 -2.61582 | opp_overlap 1264751 1264761, overlap 1264752 GATTTCACGGATAAT CCCGGC AGTT GCCGGG CGATTGTCCACTATC trmD 1265546 - 1264821 - | tRNA (guanine-N1)-methyltransferase rimM 1266120 - 1265614 - | 16S rRNA processing protein RimM RD1_1310 1266305 - 1266117 - | hypothetical protein TERM 1021 1266288 - 1266320 + g 77 -11.9 -3.59979 | opp_overlap 1266310 TGAAATTCTGGTGGT GCGCCCCGGCCTG CGCAATA CAGGCCGGAGGGC TTTGGGATAGGCGGA rpsP 1266722 - 1266354 - | 30S ribosomal protein S16 RD1_1312 1267059 - 1266763 - | chorismate mutase TERM 1022 1266834 - 1266853 + g 82 -12.8 -3.57615 | opp_overlap 1266833 1266832 ACTTCTTGGCAAATT CCGGGTCG AGGT CGGCCCGG TTTGCCAAATCTTCG TERM 1023 1267126 - 1267144 + r 70 -6.6 -4.14739 | overlap 1267128 CGTCGGTATTGCGTC GGTGCGCG GCG CGCGCATG TTTTACGATCAGTCA TERM 1024 1267128 - 1267142 + r 79 -11.4 -3.67188 | overlap 1267126 TCGGTATTGCGTCGG TGCGCG GCG CGCGCA TGTTTTACGATCAGT RD1_1313 1267758 - 1267153 - | acetyltransferase RD1_1314 1268267 - 1267755 - | acetyltransferase TERM 1025 1268060 - 1268034 - G 77 -7.8 -4.34402 | opp_overlap 1268036 1268037 1268039, overlap 1268035 1268036 GTCGGGATAGTAAAA GCCGACGACGCC AAG GGGGGCGTCGTC CTTGTCGGCAACGAT TERM 1026 1268037 - 1268060 + g 72 -13.9 -2.57211 | opp_overlap 1268034 1268036 1268035, overlap 1268036 1268039 GGGATAGTAAAAGCC GACGACGCC AAGGGG GGCGTCGTC CTTGTCGGCAACGAT RD1_1315 1269808 - 1268291 - | signal recognition particle protein, putative TERM 1027 1269389 - 1269424 + g 74 -3.9 -4.8622 | gap 1 CGCGGCGGGGCGGTT GACGTCGAGCGAG-GC CATGA GCACGCGTTTGCCGTC TTTTTCCTTGAGGCG RD1_1316 1270603 - 1270022 - | hypothetical protein TERM 1028 1270090 - 1270136 + g 80 -10.6 -4.11216 | overlap 1270080 TGCGTGCGGCGATGT CCTTGGCGCCTTTGCCGCCGGC ATA GCCGGGGGTGAGGGGGCGGCGG TTTTCGGCGTCCCCG RD1_1317 1270780 - 1271658 + | LysR family transcriptional regulator RD1_1318 1271655 - 1272551 + | integral membrane protein, putative RD1_1319 1273214 - 1272642 - | ArsR family transcriptional regulator atpI 1273222 - 1273554 + | ATP synthase F0, subunit I atpB 1273556 - 1274302 + | F0F1 ATP synthase subunit A atpE 1274358 - 1274582 + | F0F1 ATP synthase subunit C atpX 1274665 - 1275195 + | F0F1 ATP synthase subunit B' atpF 1275201 - 1275767 + | F0F1 ATP synthase subunit B TERM 1029 1275819 - 1275787 - T 93 -16.3 -2.99471 | opp_overlap 1275787 1275794, overlap 1275791 1275793 TGATCGCGAGACACA GCAAGACGCCCGGTC CCA GACCGGGCTTTTTGC GTTATGGCGTGGGAC TERM 1030 1275787 - 1275819 + T 100 -18.5 -2.59564 | opp_overlap 1275787 1275791 1275793, overlap 1275794 TGATCGCGAGACACA GCAAGACGCCCGGTC CCA GACCGGGCTTTTTGC GTTATGGCGTGGGAC TERM 1031 1275815 - 1275791 - T 70 -9.9 -3.35197 | opp_overlap 1275787 1275794, overlap 1275787 1275793 CGCGAGACACAGCAA GACGCCCGGTC CCA GACCGGGCTTT TTGCGTTATGGCGTG TERM 1032 1275813 - 1275793 - T 83 -12.5 -3.24235 | opp_overlap 1275787 1275794, overlap 1275791 1275787 CGAGACACAGCAAGA CGCCCGGTC CCA GACCGGGCT TTTTGCGTTATGGCG TERM 1033 1275794 - 1275812 + T 100 -16 -4.78149 | opp_overlap 1275793 1275791 1275787, overlap 1275787 GAGACACAGCAAGAC GCCCGGTC CCA GACCGGGC TTTTTGCGTTATGGC pdhR 1276704 - 1275919 - | pyruvate dehydrogenase complex repressor TERM 1034 1277107 - 1277076 - g 84 -11.4 -4.09685 | GGTCATGGGCGAAAA CCGGCCCACCGCCA TGCG CGGCGGCGGGATGG AGGACGTGATTTTCG smc 1276870 - 1280379 + | chromosome segregation protein, putative RD1_1328 1280412 - 1280795 + | hypothetical protein TERM 1035 1280826 - 1280793 - T 100 -8.3 -5.40072 | gap 1, overlap 1280796 CCTGCGGCAAAAAAA TA-ACCCCACAAGG CAGCGGT CCTTGCGGGGTCTA AAGAAAAAACAACCT TERM 1036 1280822 - 1280796 - T 100 -11.6 -4.79949 | overlap 1280793 GCGGCAAAAAAATAA CCCCACAAGG CAGCGGT CCTTGCGGGG TCTAAAGAAAAAACA RD1_1329 1282076 - 1280904 - | lytic murein transglycosylase, putative cobD 1283003 - 1282095 - | cobalamin biosynthesis protein CobD cobC 1283953 - 1283000 - | threonine-phosphate decarboxylase, putative TERM 1037 1284042 - 1284079 + H 95 -15.2 -3.45571 | opp_overlap 1284046, overlap 1284046 TATTCAAGTCTGACG GAAACGGTTAAGAATT AAGGCA AGTTCTTAACCGTTTC TTAATCTTTGGGGCA TERM 1038 1284046 - 1284075 + H 90 -10.2 -4.36433 | opp_overlap 1284046, overlap 1284042 CAAGTCTGACGGAAA CGGTTAAGAATT AAGGCA AGTTCTTAACCG TTTCTTAATCTTTGG osp 1284150 - 1284536 + | response regulator, putative TERM 1039 1284597 - 1284632 + T 86 -14.6 -2.88544 | gap 1 AGGTACCGCTGCGCA CCGC-CGGGTGCGGCAG GCT CAGCCGCGCCCGTGGGG TCTGTGAAAATCCAG RD1_1334 1285589 - 1284615 - | hypothetical protein RD1_1335 1285768 - 1286118 + | hypothetical protein RD1_1336 1287294 - 1286122 - | aminotransferase, putative TERM 1040 1287461 - 1287444 - g 70 -4.1 -4.63218 | CGCGGCTCAAGAAAA CGGCA GAGCCTGT TGCCG ACATCAGTGATGAGT def 1287389 - 1287916 + | peptide deformylase TERM 1041 1288226 - 1288244 + G 71 -9.5 -3.76224 | opp_overlap 1288218 CCAAAATCCGGCGTC CGCGCGG CGTGA CCGTGCG TTTCATGGATGAAAC def 1287913 - 1288410 + | peptide deformylase, putative fmt 1288429 - 1289346 + | methionyl-tRNA formyltransferase, putative RD1_1340 1289346 - 1289582 + | hypothetical protein acrD 1292747 - 1289583 - | acriflavin resistance protein D TERM 1042 1291689 - 1291674 - G 76 -6.8 -4.56597 | opp_overlap 1291677, overlap 1291676 CGGGCTGCGCAAAAA CGCCAT CAGC ACGGCG GCGGCCAGTGCCCCG RD1_1342 1293878 - 1292751 - | RND family efflux transporter MFP subunit RD1_1343 1294672 - 1293980 - | TetR family transcriptional regulator TERM 1043 1294694 - 1294714 + r 70 -6.7 -4.14243 | overlap 1294687 1294695 CTAGCTTTCGGGCGG GGCACCGCC CTC GGCCGTGCG TTTTGCGATGAAATC RD1_1344 1296220 - 1294679 - | trimethylamine methyltransferase, putative RD1_1345 1298619 - 1296217 - | dimethylglycine dehydrogenase, putative TERM 1044 1297669 - 1297651 - G 81 -13.2 -3.29511 | opp_overlap 1297649 GCCATCGGGCGAGAA GGTGAACG CGC CGTTCACC CATGTCTTGACGCCG TERM 1045 1298362 - 1298387 + g 80 -11.1 -3.80014 | gap 1 GGTCAACCCGCCGGT GCGGTGCAGGCC GAT GTCCTGC-CCGC TTTCCTCCTGAATGT RD1_1346 1298794 - 1299297 + | aggregation factor core TERM 1046 1299299 - 1299333 + T 83 -12.1 -3.66356 | gap 1, opp_overlap 1299305 GCTGCAATGCATGAT CGAGAA-GCGCCGGGG CTCG CCCCGGCGCATTGACG TTTCAGCTTGCCCGT TERM 1047 1299326 - 1299305 - T 100 -18.7 -3.37975 | opp_overlap 1299299 ATGCATGATCGAGAA GCGCCGGGG CTCG CCCCGGCGC ATTGACGTTTCAGCT RD1_1347 1300454 - 1299336 - | lipase, putative TERM 1048 1299523 - 1299513 - G 70 -4.6 -4.57341 | overlap 1299519 AATGTCGTCGAAAAA CAGG AAG CCCG CACAGGACGGAGCCG RD1_1348 1301293 - 1300610 - | fumarylacetoacetate hydrolase, putative TERM 1049 1301152 - 1301141 - G 70 -4.4 -4.56597 | overlap 1301145 GTTTTTCTGGAAAAA GAAG GGTG CTTC GCGCTCCGGGTCATG RD1_1349 1301981 - 1301343 - | hypothetical protein RD1_1350 1302627 - 1302010 - | hypothetical protein rnhA 1303082 - 1302630 - | RNase H TERM 1050 1303034 - 1303016 - G 75 -8 -4.25104 | overlap 1303017 TGGCCTGCAGCAAAA CGCCCCAG CCG CCGGGGCC CGGGTTGCCCGAACA RD1_1352 1303668 - 1303075 - | hypothetical protein RD1_1353 1304129 - 1303665 - | hypothetical protein TERM 1051 1303860 - 1303848 - G 85 -6.9 -4.8048 | overlap 1303849 1303856 CCCGGACATGAAAAA CGCCC AAA GGGCA GGGACCACTGAAAGC TERM 1052 1304029 - 1303993 - G 71 -6.3 -4.3739 | overlap 1303995 TAGGGCCCGACAAAA CGCGGGCCCAGTGCGCG GAC CCCCCATTGGGCCAGTG GCTCGGCCAGATAGG RD1_1354 1305009 - 1304164 - | hypothetical protein TERM 1053 1304387 - 1304369 - G 73 -10.2 -3.60006 | overlap 1304361 AATGACAGCCCGAAA CCGCGCCA GTC CGGCACGG TGGACAGCATGCCCC ispH 1305937 - 1304987 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase RD1_1356 1306587 - 1306039 - | hypothetical protein folK 1306678 - 1307292 + | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase rpoZ 1307369 - 1307722 + | DNA-directed RNA polymerase subunit omega spoT 1307760 - 1309916 + | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative TERM 1054 1310614 - 1310600 - g 81 -4.3 -4.91852 | TTGATCAAAAACAAA CTTGA GGCGA TCAAG GCCAAAGCGGCCAGC TERM 1055 1310663 - 1310651 - g 84 -9.1 -4.55798 | GAGGCGAAACGAAAA GCGGA GCG TCCGC CCGCCGGGGAGTGAC RD1_1360 1310003 - 1310677 + | hypothetical protein pdxJ 1310708 - 1311457 + | pyridoxal phosphate biosynthetic protein PdxJ rhtC 1311454 - 1312080 + | threonine efflux protein, putative acpS 1312077 - 1312481 + | 4'-phosphopantetheinyl transferase TERM 1056 1312536 - 1312510 - f 76 -2.9 -5.07652 | gap 1, overlap 1312513 1312514 CGGCCCAAAACAAAA CCACCGGC-GCC GTTT GACCGCCGATCG CTGTGTCCTTTGGCA TERM 1057 1313310 - 1313322 + G 79 -9.1 -4.24413 | CGGGTGTCTATACGG TGCCC GCA GGGCA TTATTTCTTCATCGG lepB 1312523 - 1313515 + | signal peptidase I, putative rnc 1313512 - 1314198 + | ribonuclease III era 1314195 - 1315103 + | GTP-binding protein Era RD1_1368 1315149 - 1315478 + | hypothetical protein recO 1315478 - 1316203 + | DNA repair protein RecO RD1_1370 1316582 - 1316187 - | hypothetical protein RD1_1371 1317100 - 1316579 - | transcriptional regulatory protein TERM 1058 1317254 - 1317228 - R 83 -12.3 -3.67597 | gap 1, opp_overlap 1317228 1317225 1317222 GGCCGGATGTAAGAA GGGCGCAG-CCG TCAC CGAACTGCGCCC TCATGTCTTGTGTAT ibd2 1318956 - 1317271 - | isobutyryl-CoA dehydrogenase TERM 1059 1319136 - 1319114 - R 100 -14.1 -5.34365 | opp_overlap 1319113 1319114 TCAGAACAAGAAAAA GCCCGCAGC ACCAA GCCGCGGGC GTTAATCGTTACAAA TERM 1060 1319114 - 1319136 + r 72 -11.9 -2.56164 | opp_overlap 1319114, overlap 1319113 TCAGAACAAGAAAAA GCCCGCAGC ACCAA GCCGCGGGC GTTAATCGTTACAAA RD1_1373 1319568 - 1319209 - | HTH-type transcriptional regulator, putative TERM 1061 1319899 - 1319922 + G 72 -11.8 -3.33509 | overlap 1319895 TTCGTCGTCACATCG CGCTTTTGGA AGAG TCCAAAGGCG TTGAATTGTTTACAG TERM 1062 1320339 - 1320313 - g 71 -7.9 -4.07568 | gap 1, opp_overlap 1320328 1320329 GGTTTGGCTGGAAAA GGGCGCGGTCCA GTAT CGG-CAGCGCCC TGGGGCAAATGCCGG RD1_1374 1319700 - 1320623 + | transcriptional regulator RD1_1375 1320715 - 1321431 + | hypothetical protein pckA 1323077 - 1321479 - | phosphoenolpyruvate carboxykinase TERM 1063 1321803 - 1321824 + g 76 -8.7 -4.07568 | gap 1 GTTCACCAGCCAGCA GGTCGCG-CC ATG GGTCGCGATC TTTTCACGCAGCAGG TERM 1064 1322303 - 1322344 + g 71 -6.6 -4.18506 | gap 2, opp_overlap 1322343 CGGACCAGCCATGTT CGTCGTCC-CCGAT-CAGCG TGCG CGCAGGATCGGCGGACAATG TTGTTTTGCCCGTAC chvI 1323431 - 1324132 + | DNA-binding response regulator ChvI, putative TERM 1065 1324532 - 1324557 + G 93 -8.3 -4.96848 | gap 1, opp_overlap 1324532 TCTGACCCTCGAAAA CCTCGAC-CTGC GCC GTGGTGTCGAGG TTTTTGTGTACGACC chvG 1324176 - 1325864 + | sensor histidine kinase ChvG, putative hprK 1325898 - 1326314 + | HPr kinase/phosphorylase TERM 1066 1326854 - 1326841 - g 73 -9.5 -3.85698 | TCTTTTTCCTACAAA CGCGG ATTG CCGCG CAGCGTTGATATGGT RD1_1380 1326307 - 1327194 + | hypothetical protein RD1_1382 1327198 - 1327590 + | PTS system IIA component, putative ptsH 1327607 - 1327876 + | phosphocarrier protein Hpr TERM 1067 1328218 - 1328259 + G 73 -5.2 -4.58283 | gap 1, opp_overlap 1328231 AAACAGGGCCTTTGA TCGTGGTGTCAAACCATCC GCATG GGATGG-TCGACGGCATGA TTTTTGCGGACCTTA RD1_1384 1327917 - 1328795 + | hypothetical protein bhbD 1329674 - 1328799 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 1068 1328841 - 1328851 + g 70 -4.6 -4.56597 | ACGGTAATCGTAAAA CCCG CGC TGGG TTTTTCGGCCCAGCC RD1_1386 1329828 - 1330664 + | hypothetical protein TERM 1069 1330693 - 1330670 - T 100 -16 -4.96848 | opp_overlap 1330670 TCTGGTATAGAAAAA GGCCGCGGCA CGGA TGCCACGGCC TTTCATCACGTCATG TERM 1070 1330670 - 1330693 + T 89 -13.8 -3.75169 | opp_overlap 1330670 TCTGGTATAGAAAAA GGCCGCGGCA CGGA TGCCACGGCC TTTCATCACGTCATG etfA 1331647 - 1330718 - | electron transfer flavoprotein, alpha subunit etfB 1332405 - 1331647 - | electron transfer flavoprotein, beta subunit RD1_1389 1333157 - 1332585 - | cob(I)alamin adenosyltransferase, putative TERM 1071 1333062 - 1333076 + g 84 -11.4 -4.07568 | opp_overlap 1333047, overlap 1333045 GGTGCCGTAGCTCGC CACGCG CAC CGCGTG TTTTGCCACCCGGGC RD1_1390 1333418 - 1333164 - | hypothetical protein TERM 1072 1333218 - 1333194 - G 77 -3.5 -4.8743 | overlap 1333197 1333206 TCGAAAATAAACAAA CAACACGATAA AGA TCACCGCGATG AACTGCGCGCCGATC TERM 1073 1333445 - 1333421 - R 81 -8.5 -4.36914 | opp_overlap 1333405 GCGTCGTTGACAAAA GCGAACGCCTA TTT CAGGCGTCAGC GAAATTAAATGCGCG RD1_1391 1334277 - 1333450 - | oxidoreductase, putative TERM 1074 1333555 - 1333578 + g 71 -7.4 -4.15044 | gap 1 TCGCGGTCTGGGGGT CTGCGCC-TCC AAC GCATGGCGCAG TTTCTTGAGCACCGC TERM 1075 1333623 - 1333641 + g 71 -6.6 -4.17958 | overlap 1333618 CAAAGGGGTCGGGGC CGCCGCTG TGA TAGAGGCG TTTGTTCAGCGTGTT TERM 1076 1333974 - 1333964 - G 74 -5.4 -4.46112 | overlap 1333966 TGCCAGCCAAAGAAA TTCG CCT CGAA TATGGCGCGCAATGC TERM 1077 1333978 - 1334034 + g 73 -13.6 -2.76696 | opp_overlap 1333966 1333977, overlap 1334017 ATTCGCCTCGAATAT GGCGCGCAATGCGT-CCGTGGGCAGGTC CTC GACC-GCGCCCGGCGTGCCATGCGCGCC GTTGTTGAACAGCGC TERM 1078 1334017 - 1334035 + g 88 -13.8 -3.61398 | opp_overlap 1333977, overlap 1333978 GTCCTCGACCGCGCC CGGCGTGC CAT GCGCGCCG TTGTTGAACAGCGCG RD1_1392 1334990 - 1334334 - | hypothetical protein TERM 1079 1334501 - 1334526 + g 81 -6 -4.8543 | overlap 1334487 CGGAGCGCATGTTGA CCCGCGTTCC TTTGAC GGACCGCAGG TTTTTCTCACCGTTG TERM 1080 1335800 - 1335786 - g 71 -7 -4.26903 | TTCACCTCATCAAAA CGCCCG ATG CGCGCG ATGACACCTTGTTGA TERM 1081 1336059 - 1336044 - g 74 -4 -4.75472 | gap 1 TTCAGACCAAGAAAA TCC-CGA TCC TCGCGGA TGTGCGTGACGAATC TERM 1082 1336771 - 1336793 + G 71 -9.1 -3.73224 | CATCGAGGCGATGAT CGACCGCGA GCCGA TCACGGTCG TTTGCTCGCAAATGG parC 1335179 - 1337476 + | DNA topoisomerase IV subunit A cyp 1338843 - 1337473 - | cytochrome P450 TERM 1083 1337702 - 1337722 + g 72 -11.9 -3.28791 | opp_overlap 1337699 1337717 CGGTTCTGAAACCTG TCCGGGTCA AAC TGATCCGGA TTGTCCCAAAGCAGT TERM 1084 1338156 - 1338122 - G 76 -9.8 -3.79747 | overlap 1338123 1338140 CCAGCCAGCAGCAAA TCGAGCAGGTCGGGAA CAT CTCCCGGCCCGCGCGC GGCGCGCGCCTCGAT TERM 1085 1338155 - 1338123 - G 75 -13.3 -2.87527 | overlap 1338122 1338140 CAGCCAGCAGCAAAT CGAGCAGGTCGGGAA CAT CTCCCGGCCCGCGCG CGGCGCGCGCCTCGA RD1_1395 1338967 - 1339596 + | hypothetical protein tufA 1339709 - 1340884 + | elongation factor Tu TERM 1086 1340939 - 1340906 - T 83 -9.7 -4.07885 | gap 1, overlap 1340930 GACGCGCCCTCAAAA GCGTGTCGAAGATTAC GGA GTAATC-CCGAGACGC GCCCCCAAAAGCGTG TERM 1087 1340983 - 1340950 - T 83 -9.7 -4.07885 | gap 1, overlap 1340974 GACGCGCCCCCAAAA GCGTGTCGAAGATTAC GGA GTAATC-CCGAGACGC GCCCTCAAAAGCGTG TERM 1088 1341027 - 1340994 - T 74 -7.5 -4.07885 | gap 1, overlap 1341018 GACGCGCCCTCAAAA GCGTGTCGAAGATTAC GTA GCAATCC-CGAGACGC GCCCCGCTGCGCGAG TERM 1089 1341094 - 1341115 + T 100 -15.9 -3.89412 | opp_overlap 1341094 CCGGTAACAACAAAA GCCGCAGTG ATAT CACTGCGGC TTTGCTGATTTAGAT TERM 1090 1341115 - 1341094 - T 100 -15.9 -4.89477 | opp_overlap 1341094 CCGGTAACAACAAAA GCCGCAGTG ATAT CACTGCGGC TTTGCTGATTTAGAT TERM 1091 1341194 - 1341154 - T 79 -11.1 -3.73402 | AGACTGCGGAGCAAA CTGGACATCTGGACTGCCG TTA CGGCATTCCAATCACCCAG CAGCTCGTTTTATTC RD1_1397 1341844 - 1341233 - | protease, putative TERM 1092 1342089 - 1342130 + H 81 -12.3 -3.53091 | overlap 1342092 CCGCCTAAACGGCGC TAACTTCATGGGGGTTCGG TCTG CCGAGCCCCTGCGGGGTTA TTTAAAAGACGCGAT TERM 1093 1342092 - 1342127 + H 76 -9.6 -3.90744 | overlap 1342089 CCTAAACGGCGCTAA CTTCATGGGGGTTCGG TCTG CCGAGCCCCTGCGGGG TTATTTAAAAGACGC rpsJ 1342209 - 1342526 + | 30S ribosomal protein S10 TERM 1094 1342588 - 1342576 - g 83 -4.8 -5.0538 | opp_overlap 1342575 1342577, overlap 1342577 CGTTATTGCAAAAAA GGTC GGGAT GACC CGGCTGTTCATGGAA TERM 1095 1343295 - 1343243 - g 78 -10.3 -3.95051 | overlap 1343285 GAAGAAGCTGAGAAA GCCGCCGAAGCTGCTGCTGCCGCCG CCG CCGCCGAAGCAGAAGCCGCCGCAGC TGCCGCAGCCGCCGA rplC 1342547 - 1343407 + | ribosomal protein L3 rplD 1343404 - 1344021 + | 50S ribosomal protein L4 rplW 1344018 - 1344314 + | 50S ribosomal protein L23 TERM 1096 1344341 - 1344360 + F 100 -11.4 -5.22006 | opp_overlap 1344341 1344340 TATGAATACCGAAAG GCCCCTGT GCAC GCAGGGGC TTTTTCTTGTGGTGC RD1_1402 1344584 - 1344790 + | cold shock protein CspA-related protein, putative TERM 1097 1344822 - 1344844 + F 100 -17 -5.10154 | opp_overlap 1344822 ACCGAATTTTGACAA GGGCGGATCC AAG GGGTCCGCCC TTTTTCGTTTTGGGT TERM 1098 1344844 - 1344822 - f 95 -14.8 -3.3344 | opp_overlap 1344822 ACCGAATTTTGACAA GGGCGGATCC AAG GGGTCCGCCC TTTTTCGTTTTGGGT RD1_1403 1344977 - 1345894 + | hypothetical protein TERM 1099 1346127 - 1346103 - T 77 -8.5 -4.11216 | overlap 1346117 GCGTCATGCGGAAAA TCCGAGCCACG TAA CGCTGCTCGAA ATCAAAGATTTCAAC RD1_1404 1346594 - 1346193 - | hypothetical protein TERM 1100 1346763 - 1346796 + H 95 -15.3 -3.61398 | opp_overlap 1346766 1346770, overlap 1346766 1346770 ATATCAGACCTCCAG CAAGGCAGCCCCGGA TTCG TCCGGGGCTTCGTTG TTGTTCGAAAGGACA TERM 1101 1346766 - 1346793 + H 85 -11.2 -3.9461 | opp_overlap 1346766 1346770, overlap 1346763 1346770 TCAGACCTCCAGCAA GGCAGCCCCGGA TTCG TCCGGGGCTTCG TTGTTGTTCGAAAGG TERM 1102 1346793 - 1346766 - H 74 -11.2 -3.16191 | opp_overlap 1346766 1346763 1346770, overlap 1346770 TCAGACCTCCAGCAA GGCAGCCCCGGA TTCG TCCGGGGCTTCG TTGTTGTTCGAAAGG TERM 1103 1346770 - 1346789 + H 95 -15 -3.62255 | opp_overlap 1346766 1346770, overlap 1346766 1346763 ACCTCCAGCAAGGCA GCCCCGGA TTCG TCCGGGGC TTCGTTGTTGTTCGA TERM 1104 1346789 - 1346770 - H 83 -15 -2.56715 | opp_overlap 1346770 1346766 1346763, overlap 1346766 ACCTCCAGCAAGGCA GCCCCGGA TTCG TCCGGGGC TTCGTTGTTGTTCGA TERM 1105 1347713 - 1347679 - g 95 -2.6 -5.64873 | CGGAACAAGAAAAAA GCGTCCAGCCAGCTGA TCA TCCGCTCGCGTCACGC CAAGAAGAAGGGGCG rplB 1346890 - 1347732 + | 50S ribosomal protein L2 TERM 1106 1347801 - 1347789 - g 70 -4.7 -4.57569 | TTATGTGTTGAAAAA GGCCG AAG CGTCC CGCGAGAGCGGTCGC rpsS 1347736 - 1348014 + | 30S ribosomal protein S19 TERM 1107 1348245 - 1348229 - g 71 -6.5 -4.19577 | CAATGGTGAAAACAA CCACAAC CTT GATGTGG ACGAGCTGATCGTGG TERM 1108 1348315 - 1348296 - g 71 -9.2 -3.79519 | opp_overlap 1348302 AACCTGACGATGAAA CGTGGCCG CCCG CGGGCACG TGGTCGTTTTGGCAA rplV 1348011 - 1348391 + | 50S ribosomal protein L22 rpsC 1348391 - 1349098 + | 30S ribosomal protein S3 rplP 1349112 - 1349525 + | 50S ribosomal protein L16 TERM 1109 1349596 - 1349623 + TF 100 -13.4 -5.26875 | opp_overlap 1349596 1349597 1349599, overlap 1349597 TTTCAGAGTTTTAAA GGACCCGGCGGA ACAC TCCGTCGGGTCG TTTTTTACTTCCGGG TERM 1110 1349623 - 1349596 - Tf 77 -11.2 -3.59262 | opp_overlap 1349596 1349597, overlap 1349597 1349599 TTTCAGAGTTTTAAA GGACCCGGCGGA ACAC TCCGTCGGGTCG TTTTTTACTTCCGGG TERM 1111 1349597 - 1349622 + TF 100 -16.9 -3.75402 | opp_overlap 1349596 1349597 1349599, overlap 1349596 TTCAGAGTTTTAAAG GACCCGGCGGA ACAC TCCGTCGGGTC GTTTTTTACTTCCGG TERM 1112 1349622 - 1349597 - Tf 83 -14.7 -2.75343 | opp_overlap 1349597 1349596, overlap 1349596 1349599 TTCAGAGTTTTAAAG GACCCGGCGGA ACAC TCCGTCGGGTC GTTTTTTACTTCCGG TERM 1113 1349620 - 1349599 - Tf 71 -11.5 -2.92171 | opp_overlap 1349597 1349596, overlap 1349597 1349596 CAGAGTTTTAAAGGA CCCGGCGGA ACAC TCCGTCGGG TCGTTTTTTACTTCC RD1_1411 1350311 - 1349862 - | hypothetical protein TERM 1114 1350079 - 1350102 + Gg 88 -6.7 -4.93296 | gap 1, opp_overlap 1350078, overlap 1350076 1350080 GCCGCTTCGACACAG TGGCG-GACG ATGTC CGTCACGCCG TTTTTCTGGTGATAG RD1_1410 1349850 - 1350323 + | hypothetical protein RD1_1412 1351080 - 1350463 - | hypothetical protein TERM 1115 1351521 - 1351544 + G 78 -7.4 -4.59773 | gap 1, overlap 1351523 GCCACGGCGCTTGGC GACGCATCCGC AAC GCGGAT-CGGC TTTTTCCGGGTGCGC RD1_1414 1351377 - 1351943 + | hypothetical protein arcB 1353477 - 1352425 - | ornithine cyclodeaminase arcA 1354412 - 1353486 - | arginase TERM 1116 1353797 - 1353807 + g 75 -8.2 -4.2828 | overlap 1353795 ACCTGCGCAGGGGGG CGGC GAT GCCG TTTTCATCAATCGCG RD1_1417 1355241 - 1354603 - | threonine efflux protein TERM 1117 1354712 - 1354697 - G 71 -8.2 -4.07526 | overlap 1354687 1354698 AACCAGCGAGAGAAA CGCGCG TAAC CGCGCA TGGCGACGCCAGTCG TERM 1118 1355447 - 1355461 + H 71 -8.5 -3.79251 | CGGTATGGGCGGCTT GGGCC TATAC GGCCC TTTCATCATGGACTC TERM 1119 1355730 - 1355717 - g 74 -3.7 -4.86621 | ATTCTGAACCAAAAA GCGGC ATCT GCTGC TGCGTCCGAGTAAGG RD1_1418 1355537 - 1355743 + | 50S ribosomal protein L29 rpsQ 1355755 - 1355994 + | 30S ribosomal protein S17 TERM 1120 1356249 - 1356226 - g 75 -2.2 -5.00616 | opp_overlap 1356228, overlap 1356227 1356228 GGCCGTGTGAAAAAA GGCGACGTCC GCAA GGCCGTCGTT GTGCGCACCGCCAAG TERM 1121 1356313 - 1356282 - g 80 -14.5 -3.0263 | opp_overlap 1356280 1356279, overlap 1356271 AGTACGCCGCGAAGA CGGCACCGCGATC CGCTTT GATCGCAATGCCG CCGTTATCCTCAACA rplN 1356064 - 1356432 + | 50S ribosomal protein L14 TERM 1122 1356470 - 1356456 - g 89 -4.2 -5.22039 | overlap 1356458 GCTAAACTGAAAAAA GGTGAC AAG GTCATC GTGCTGGCAGGCAAG rplX 1356435 - 1356746 + | 50S ribosomal protein L24 TERM 1123 1356935 - 1356910 - g 74 -7.5 -4.29106 | CGCGACAGCAAGAAA GCCAAGTCCGC GCAA GCCGACCTGAC GCTGATTGCCGGTCA rplE 1356739 - 1357302 + | 50S ribosomal protein L5 rpsN 1357323 - 1357628 + | 30S ribosomal protein S14 rpsH 1357641 - 1358033 + | 30S ribosomal protein S8 TERM 1124 1358084 - 1358065 - g 80 -3.5 -5.03314 | gap 1 CGTATTGGTAAAAAA CCGGTCGA TCTGC CCG-CCGG TGTAAGCGCATCCGT rplF 1358044 - 1358577 + | 50S ribosomal protein L6 rplR 1358589 - 1358948 + | 50S ribosomal protein L18 TERM 1125 1358958 - 1358977 + F 81 -12.8 -3.09516 | opp_overlap 1358951 1358949, overlap 1358932 ATCTAAGACTTGCAA GCCGCTCC TTTG GGGGCGGC TTCGATGATCCGGGG rpsE 1359055 - 1359630 + | 30S ribosomal protein S5 TERM 1126 1359686 - 1359667 - g 76 -10 -3.75015 | ACAATCGTCATCAAA CAGATCGG CTCC CCGATCCG TCGCCCCGCAAAACA TERM 1127 1359714 - 1359700 - g 80 -10 -4.07568 | CGTCGCCCCGCAAAA CAGCGT GCC ACGCTG ATCGGTCTGGGCCTG rpmD 1359643 - 1359831 + | 50S ribosomal protein L30 TERM 1128 1359861 - 1359884 + F 100 -16 -5.1417 | opp_overlap 1359856 TCTTGAGAATTTGAA CCCCTCGCAG GAGA CTGCGGGGGG TTTTTCGTTTTGTGC TERM 1129 1360069 - 1360053 - g 89 -4.3 -5.1615 | overlap 1360055 CGAACAGCGAAAAAA CCTGCAC CGA GCGCATG CCAGAAGTCCGCGCG RD1_1430 1359968 - 1360243 + | hypothetical protein TERM 1130 1360339 - 1360367 + F 80 -11.8 -3.32844 | opp_overlap 1360339 1360345, overlap 1360345 TCAAAAGATCAAAAT GAAAAAGCCACC AAAAC GGTGGCTTTATC TTATAGCGTCGGGGG TERM 1131 1360367 - 1360339 - f 84 -12.5 -3.32411 | opp_overlap 1360339 1360345, overlap 1360345 TCAAAAGATCAAAAT GAAAAAGCCACCA AAA CGGTGGCTTTATC TTATAGCGTCGGGGG TERM 1132 1360345 - 1360361 + F 84 -9.4 -4.27519 | opp_overlap 1360339 1360345, overlap 1360339 GATCAAAATGAAAAA GCCACC AAAAC GGTGGC TTTATCTTATAGCGT TERM 1133 1360361 - 1360345 - f 100 -10.1 -5.1166 | opp_overlap 1360345 1360339, overlap 1360339 GATCAAAATGAAAAA GCCACCA AAA CGGTGGC TTTATCTTATAGCGT TERM 1134 1360815 - 1360803 - f 75 -6.9 -4.40804 | opp_overlap 1360803 CAGGACCGGAGAAAA GCGCC TTG GACGC TGTTGCACTTCCGAA rplO 1361396 - 1361878 + | 50S ribosomal protein L15 TERM 1135 1361890 - 1361925 + F 74 -7.7 -4.21922 | gap 2, opp_overlap 1361892, overlap 1361899 GTAAGCCCAAGATCA GAC-T-TGTGGGCGGCG GCTG CGCCGCTTACATACGTC TTTAGTTTTCCATGA TERM 1136 1361899 - 1361914 + F 76 -11.8 -3.10701 | opp_overlap 1361892, overlap 1361890 AGATCAGACTTGTGG GCGGCG GCTG CGCCGC TTACATACGTCTTTA TERM 1137 1361938 - 1361974 + F 91 -12.3 -4.15044 | opp_overlap 1361959 GTCTTTAGTTTTCCA TGACGCCGCCC-AGCCG GAAAA CGGCCCGGGCGGCG-CA TTTGTTACGAAAGAG TERM 1138 1363060 - 1363041 - g 78 -6.4 -4.6902 | GGATAACCTTAAAAA CCAGAACG GGTT CATTCCGG GCATCCGCCCGGGCA TERM 1139 1363335 - 1363322 - g 76 -9.5 -4.08064 | AACTGCGCGGCAAAA GCGGC AAGG GCCGC AAGAAACGGAGCCCT secY 1361998 - 1363362 + | preprotein translocase subunit SecY adk 1363359 - 1364006 + | adenylate kinase RD1_1434 1365229 - 1364033 - | hypothetical protein TERM 1140 1364840 - 1364852 + g 91 -4.8 -5.47431 | overlap 1364837 GGTGTCGACAGTGCC GGTC TTGCC GACC TTTTTTCTATATTCC TERM 1141 1365297 - 1365318 + H 73 -8.7 -3.87075 | gap 1 GATCTTTGGGTCTAT GCTG-GTGCG GCG CGCGCGCAGC TTTGTGCCGCGTACT TERM 1142 1365450 - 1365482 + H 71 -8.3 -3.85698 | overlap 1365454 GATCACCTGATCAGC TGACGCCCGGTGCTT TGG ATGCGCTGGGCTTCG TTTGTGAAAAAAGGG TERM 1143 1365454 - 1365478 + H 71 -9.9 -3.6053 | overlap 1365450 ACCTGATCAGCTGAC GCCCGGTGCTT TGG ATGCGCTGGGC TTCGTTTGTGAAAAA TERM 1144 1365514 - 1365495 - H 80 -4.9 -5.00616 | TCGTTTGTGAAAAAA GGGTCTG GAATCA CGGACCC GCAACGAAAAGGAAG rpsM 1365537 - 1365905 + | 30S ribosomal protein S13 rpsK 1365921 - 1366310 + | 30S ribosomal protein S11 TERM 1145 1366320 - 1366360 + F 95 -8.2 -5.02074 | gap 1, opp_overlap 1366325, overlap 1366321 GTTTAAGCTGTTTTA CCAGATTTGGGGCCGTGTG TTCG CGCACGGCCCCCA-TCCGC TTTTTTGAAACCTCG TERM 1146 1366321 - 1366359 + F 81 -11.7 -3.60762 | gap 1, opp_overlap 1366325, overlap 1366320 TTTAAGCTGTTTTAC CAGATTTGGGGCCGTGTG TTCG CGCACGGCCCCCA-TCCG CTTTTTTGAAACCTC rpoA 1366413 - 1367441 + | DNA-directed RNA polymerase subunit alpha TERM 1147 1367521 - 1367500 - f 81 -12.3 -3.51032 | AGGCCCCAAGGAGAA CCGGGTGAC ACGC ATCACCCGG TCAGACAAAGCAAAA rplQ 1367571 - 1367993 + | 50S ribosomal protein L17 TERM 1148 1368045 - 1368020 - f 100 -14.7 -4.08767 | opp_overlap 1368020 GCCACTGCTGGAAAA GCCCTTGTCCC GCGC GGGACGAGGGC TTTTTTGATGAGGTG TERM 1149 1368020 - 1368045 + F 100 -16.9 -5.15634 | opp_overlap 1368020 GCCACTGCTGGAAAA GCCCTTGTCCC GCGC GGGACGAGGGC TTTTTTGATGAGGTG TERM 1150 1368167 - 1368180 + F 90 -8.1 -4.68593 | AGCGCTGCGCGGACT CGCAC CAAG GTGCG TTTTTCGGTAATACG RD1_1439 1368216 - 1369541 + | recombination factor protein RarA crcB 1369608 - 1369991 + | CrcB-like protein TERM 1151 1370318 - 1370303 - g 71 -6.8 -4.2461 | overlap 1370299 1370304 ATCGCGATCAACAAA CCGGCA GGCC TGCCGA CGCAGGGCGGGTCGG rluC 1369988 - 1371028 + | ribosomal large subunit pseudouridine synthase C RD1_1442 1371028 - 1371705 + | hydrolase, putative RD1_1443 1371709 - 1372419 + | ATP12 chaperone protein, putative TERM 1152 1372803 - 1372822 + G 72 -11.4 -3.30124 | gap 1 TGACGTCGCAGTCTG CCGC-GCGG TTG CCGCTGCGG TTCTGGGCGATGCAA TERM 1153 1373082 - 1373038 - g 71 -6.4 -4.18908 | gap 1, opp_overlap 1373040 ACATCGGCAAAAGAA CTCGATGG-CGCAACGGTTTG TATC CAGACCGGCACAACCACCGAG CTGAACCTCGCGGAT bztA 1372618 - 1373634 + | glutamate/glutamine/aspartate/asparagine-binding protein TERM 1154 1373677 - 1373645 - f 100 -15.7 -4.36127 | gap 1, overlap 1373646 1373647 1373649 1373666 GTTAAGAACTGAAAA CGCAGGGGCGCAGA GTTAAA TCTGCGCCCCTG-G CACATTGGACGACCA TERM 1155 1373677 - 1373646 - f 100 -15.9 -3.20953 | overlap 1373645 1373647 1373649 1373666 TTAAGAACTGAAAAC GCAGGGGCGCAGA GTTAAA TCTGCGCCCCTGG CACATTGGACGACCA TERM 1156 1373676 - 1373647 - f 100 -19.4 -2.51849 | overlap 1373645 1373646 1373649 1373666 TAAGAACTGAAAACG CAGGGGCGCAGA GTTAAA TCTGCGCCCCTG GCACATTGGACGACC TERM 1157 1373674 - 1373649 - f 90 -16.2 -2.78263 | overlap 1373647 1373645 1373646 1373666 AGAACTGAAAACGCA GGGGCGCAGA GTTAAA TCTGCGCCCC TGGCACATTGGACGA TERM 1158 1374349 - 1374364 + G 71 -6.8 -4.2123 | GGGACCGGGGTCTAT GGTCGT CGTT GCGACC TTTATTGCGTCGGTC TERM 1159 1374450 - 1374469 + G 73 -5 -4.72272 | overlap 1374447 GTCTGTTGCCCATGG GATGGC CGAGCCTT GCCATC TTTTTCGTACCGACC bztB 1373768 - 1374982 + | glutamate/glutamine/aspartate/asparagine transport system permease protein TERM 1160 1374974 - 1374960 - f 74 -4.2 -4.77567 | ACGTCTACAACAAAA CCGTCA CCC TGAAGG AGCGTTGATTGATGA RD1_1446 1374986 - 1376284 + | amino acid ABC transporter, permease protein TERM 1161 1376383 - 1376367 - T 74 -6.5 -4.33755 | AGCAACATGAACAAA TGGTACG GAT CGTTCCA CGTACTGCGCGACAT RD1_1447 1376905 - 1376723 - | hypothetical protein TERM 1162 1377092 - 1377112 + r 100 -16.1 -4.36595 | GGTATTGATTGGATG CGCCGTCCC ATG GGGGCGGCG TTTTCCGTTTCAGTC RD1_1448 1377619 - 1377122 - | phosphoglycerate mutase, putative RD1_1449 1378273 - 1377623 - | hypothetical protein TERM 1163 1378018 - 1377992 - G 71 -7.2 -4.25256 | CGCCCATGAAAAGAA CGGTTTGAAGGG CGG CCCGCCAAACGG ATAAAGCGCCAGCGC RD1_1450 1379064 - 1378270 - | sterol desaturase, putative TERM 1164 1378602 - 1378578 - G 80 -10 -4.12188 | gap 1, overlap 1378548 1378546 GGATGATCTCGAAAA GGACCA-CGGC GATG GCCGCTGGCCC CAAGAGATAGACCAG TERM 1165 1379132 - 1379099 - R 80 -10.3 -3.79906 | overlap 1379129 GTACTGTCAGAACAA GCCGTTCCCTGACAC ATCT GCGTCAGAAAACGCC TATGCCATCGCATGG TERM 1166 1379149 - 1379129 - R 77 -7.6 -4.37092 | gap 1, overlap 1379099 ATCTGCGTCAGAAAA CGCCTATGC CATC GCAT-GGCG GAACGCTAGTCCGCG argB 1380018 - 1379155 - | acetylglutamate kinase RD1_1453 1380698 - 1380048 - | GTPase EngB RD1_1454 1381438 - 1380698 - | MOSC domain-containing protein oxaA 1383255 - 1381435 - | putative inner membrane protein translocase component YidC TERM 1167 1383225 - 1383241 + g 71 -5.9 -4.3129 | AGCTGAGTGCTGTTG CAAGAAT AAG GTTCTTG TTTTGGTCGTCCATC RD1_1456 1384974 - 1383427 - | EAL domain-containing protein TERM 1168 1384186 - 1384200 + g 73 -4.2 -4.58283 | opp_overlap 1384186 CTGGGGTTGAAACCA GGGC TTTATCT GCCC TTTTTCGAGGGCTTG TERM 1169 1384432 - 1384384 - G 74 -6.9 -4.36914 | gap 3, opp_overlap 1384430 GGTCTGCTGACAAAA GCCGACCGAACTGGTGATACACAC TGCG GTG-GCATC--CAGTGCGATCGGC TCCTCCAAAGCGGCC RD1_1457 1386023 - 1385094 - | hypothetical protein RD1_1458 1386271 - 1386035 - | hypothetical protein rnpA 1386681 - 1386268 - | ribonuclease P protein component, putative TERM 1170 1386617 - 1386651 + g 73 -10.6 -3.56643 | opp_overlap 1386621, overlap 1386621 TGCGTCAAACGCGAA GAAACCGCCGGAGGTG CGA CCCCTTCGGCGGTTGA TTTCACAGGTGTGAC TERM 1171 1386647 - 1386621 - G 100 -13.6 -4.23104 | opp_overlap 1386617 1386621 TCAAACGCGAAGAAA CCGCCGGAGGTG CGA CCCCTTCGGCGG TTGATTTCACAGGTG TERM 1172 1386621 - 1386647 + g 93 -15.8 -3.51708 | opp_overlap 1386621, overlap 1386617 TCAAACGCGAAGAAA CCGCCGGAGGTG CGA CCCCTTCGGCGG TTGATTTCACAGGTG rpmH 1386840 - 1386706 - | 50S ribosomal protein L34 merA 1387141 - 1387872 + | mercuric reductase merA 1387814 - 1389292 + | mercuric reductase regM 1389304 - 1390710 + | sensor histidine kinase RD1_1467 1391051 - 1391494 + | hypothetical protein TERM 1173 1391629 - 1391644 + F 85 -2.6 -5.47218 | CTAACTCGTAAGCAG TTTTAG TTTT CTGAAA TTTTTTTGCGTGGAA RD1_1468 1393010 - 1393297 + | hypothetical protein TERM 1174 1394220 - 1394249 + T 75 -5.7 -4.56597 | gap 1, opp_overlap 1394221 1394226 1394228, overlap 1394220 1394221 1394226 AGCCCGGCATATGAA C-GAAAAGACTCCG CGC CGGAGACTGTTCCG TTTTTCGGCACAAAA TERM 1175 1394242 - 1394226 - T 79 -7.9 -4.4773 | opp_overlap 1394226 1394221 1394220 1394220, overlap 1394221 1394228 GCATATGAACGAAAA GACTCCG CGC CGGAGAC TGTTCCGTTTTTCGG TERM 1176 1394240 - 1394228 - T 73 -9.1 -3.84039 | opp_overlap 1394226 1394221 1394220 1394220, overlap 1394226 1394221 ATATGAACGAAAAGA CTCCG CGC CGGAG ACTGTTCCGTTTTTC RD1_1469 1394822 - 1394709 - | hypothetical protein RD1_1470 1394986 - 1395165 + | hypothetical protein RD1_1471 1395405 - 1396580 + | SCP-like extracellular protein TERM 1177 1396837 - 1396825 - g 80 -4.1 -5.12617 | GAAGTATGCAAAAAA CTGTC GTC AACAG CTGGAACGAATGGGA gatM 1396815 - 1397939 + | glycine amidinotransferase RD1_1474 1399634 - 1398117 - | malonyl-CoA synthase TERM 1178 1398379 - 1398394 + g 84 -9 -4.44046 | ACGCCTGCTTCGCGA TCGAGC AAAA GCTCGA TTTCTTTGGGATAGA TERM 1179 1398516 - 1398532 + g 78 -2.2 -5.02476 | GAAAAAACCGTTCTC CCGC AACTCTTCG GCGG TTTTTTCCGGCATCT mcd 1400881 - 1399637 - | malonyl-CoA decarboxylase TERM 1180 1400568 - 1400609 + g 80 -11.7 -3.82191 | gap 1, overlap 1400572 TGACGCCGAGGTTCG CAAGCTGCGGCAAAGGCACG ATA TGTGTCTTTGCC-CGGGTTG TTCTTATAGGCTTCC TERM 1181 1400572 - 1400606 + g 71 -7.8 -4.03219 | overlap 1400568 GCCGAGGTTCGCAAG CTGCGGCAAAGGCACG ATA TGTGTCTTTGCCCGGG TTGTTCTTATAGGCT RD1_1476 1402194 - 1400878 - | TRAP dicarboxylate family transporter DctM subunit RD1_1477 1402796 - 1402194 - | hypothetical protein TERM 1182 1402411 - 1402391 - G 76 -10.5 -3.75378 | ATCCGTAGAACAGAA CGATTGCGA CCA TCACAATCG AAAGTGTCATCGTGA RD1_1478 1403808 - 1402819 - | C4-dicarboxylate transport system C4-dicarboxylate-binding protein, putative TERM 1183 1402982 - 1402993 + g 74 -3.6 -4.8143 | AAGACCTTTACCGAG GCGG CATC CTGC TTTTTCGCTTCTTCC TERM 1184 1403038 - 1403050 + g 74 -6.2 -4.49937 | overlap 1403041 GGCTTTTTCCGCAGC CGCC AGCAG GGCG TTTTGCTGTTCTTCC RD1_1479 1403947 - 1404594 + | GntR family transcription regulator putative RD1_1480 1405070 - 1404822 - | hypothetical protein mtlK 1406860 - 1405379 - | mannitol 2-dehydrogenase TERM 1185 1405518 - 1405533 + g 76 -6.8 -4.56597 | overlap 1405516 TTGGTCTGCTCAAGC CATGCC ACGG GGCGTG TTTTTGCAGCCAAGG TERM 1186 1406182 - 1406195 + g 75 -8.1 -4.2828 | opp_overlap 1406181 AATCAACCATCGAAT TGGGG AAGG CCCCA TTTTCATCGATCCAA RD1_1482 1407009 - 1406848 - | hypothetical protein RD1_1483 1408047 - 1407043 - | sugar transport ATP-binding transport protein, putative RD1_1484 1408890 - 1408060 - | sugar ABC transporter, permease protein, putative TERM 1187 1408832 - 1408821 - G 75 -2.2 -4.88918 | GGATCGGAAAGAAAA TCAG CAGA CCGA TACCCCATGCCAGTG RD1_1485 1409767 - 1408901 - | sugar ABC transporter, permease protein, putative TERM 1188 1409873 - 1409839 - R 100 -16.5 -4.52143 | TTGAAAGAGAAGAAA CCCGGGGAGCACA TGGGGGAAT TGTGCCCCCCGGG TCAGGAGGAGCGCTT RD1_1486 1411194 - 1409887 - | periplasmic sorbitol-binding protein, putative TERM 1189 1411293 - 1411283 - R 72 -2.4 -4.86731 | CGCGCGTAAATAAAA GGCG AGG CGCA TGTCAAAACAAGTGC RD1_1487 1412340 - 1411309 - | LacI family transcription regulator RD1_1488 1413538 - 1412798 - | histidine kinase, putative RD1_1489 1415087 - 1413615 - | trehalose/maltose binding TERM 1190 1413737 - 1413750 + g 70 -3.7 -4.59773 | ACCATCTGTTTGACA CGCGC TCAA GGGCG TTTTTAGGGCTAACC TERM 1191 1415669 - 1415623 - g 85 -3.1 -5.40072 | overlap 1415647 TCTGGCGGAAAAAAA GGAAATCATCCTGCATG-AACAG AAC CTGTTGCA-ACAGGTCGAATCCC TCGAAGAGGTGCGGG TERM 1192 1416167 - 1416156 - g 72 -2.2 -4.86001 | gap 1, overlap 1416157 1416158 ATCAGCTGACAAAAA CGGCG CAA CGC-G AAATTGACCTCGCGG TERM 1193 1416839 - 1416823 - g 71 -8.7 -3.73534 | GAACCTGATCAACAA CGCGATG AAA CATCACG ACAGGGAAAAAGGAA RD1_1490 1415207 - 1417150 + | hypothetical protein TERM 1194 1417214 - 1417194 - g 85 -3.2 -5.37345 | CTGAAGTACAAAAAA CGGCAACA CAGGT TGATACCG CGCCGGTGAAGTTCT RD1_1491 1417172 - 1417633 + | response regulator, putative RD1_1492 1417733 - 1417831 + | hypothetical protein TERM 1195 1417949 - 1417936 - g 88 -3.7 -5.55698 | overlap 1417937 GATAACGCAAAAAAA GGCCG TCAT CGGCA TAATCGGGATGGGGT RD1_1493 1417874 - 1419202 + | UDP-glucose/GDP-mannose dehydrogenase, putative fmdA 1420196 - 1419258 - | formamidase, putative TERM 1196 1420315 - 1420326 + r 78 -5.8 -4.72986 | TCATGCGCTCAACCT CACG GGTC CGTG TTTTTCATAGGCCTC RD1_1495 1421949 - 1420300 - | tryptophan monooxygenase, putative TERM 1197 1420832 - 1420848 + g 71 -5.7 -4.32857 | overlap 1420835 ATCGACATCGTATCA CGGCCCG TGA CGGGGTG TTTGTCTTTCCAGAA RD1_1496 1422731 - 1421946 - | hydrolase, putative RD1_1497 1424048 - 1422741 - | glutamine synthetase, putative TERM 1198 1423736 - 1423689 - G 89 -12 -4.17089 | gap 2, overlap 1423691 1423692 TTCAAAGGCGGAAAA CAG-GCG-CGCGCCCGACAGGC GGTGCA GCCTGTCGAGAGCGTCGCGCAG AATGTGCCGGGTGCA TERM 1199 1423733 - 1423691 - G 88 -13.4 -3.68071 | gap 1, overlap 1423689 1423692 CAAAGGCGGAAAACA GGCG-CGCGCCCGACAGGC GGTGCA GCCTGTCGAGAGCGTCGCG CAGAATGTGCCGGGT TERM 1200 1423732 - 1423692 - G 84 -16.9 -2.8012 | gap 1, overlap 1423691 1423689 AAAGGCGGAAAACAG GCG-CGCGCCCGACAGGC GGTGCA GCCTGTCGAGAGCGTCGC GCAGAATGTGCCGGG RD1_1498 1424902 - 1424045 - | RpiR family transcriptional regulator RD1_1499 1425015 - 1425824 + | hypothetical protein RD1_1500 1425821 - 1426462 + | hypothetical protein TERM 1201 1426741 - 1426764 + G 70 -5.2 -4.57569 | overlap 1426722 1426743 CCCGCAAGGGCATTG CACGCACGTT TCAG AACCTGCGCG TTTTTCCAAGCCTGA RD1_1501 1426506 - 1427216 + | branched-chain amino acid ABC transporter, ATP-binding protein RD1_1502 1427247 - 1428398 + | branched-chain amino acid ABC transporter, periplasmic binding protein, putative RD1_1503 1428443 - 1429147 + | branched-chain amino acid ABC transporter, ATP-binding protein RD1_1504 1429149 - 1430045 + | branched-chain amino acid ABC transporter, permease protein RD1_1505 1430042 - 1431067 + | branched-chain amino acid ABC transporter, permease protein, putative TERM 1202 1431276 - 1431229 - T 71 -6.3 -4.30719 | gap 1, opp_overlap 1431239 CGTTGCCACAATAAA GGGCTCAGTCCCGCCAGC GCCTTACGGTTAT ACGGGCGGG-CTGAACCC GAGGATGAGCTGGCG RD1_1506 1432311 - 1431256 - | YeeE/YedE domain-containing protein RD1_1507 1432761 - 1432345 - | ArsR family transcriptional regulator soxS 1433157 - 1432789 - | SoxS ccdA 1433231 - 1433968 + | cytochrome c biogenesis protein soxW 1433984 - 1434547 + | thioredoxin SoxW TERM 1203 1434601 - 1434588 - f 75 -3.9 -4.85918 | opp_overlap 1434588 TATCACATAATAAAA TTCAA TTAG TTGAA TTTGTTGTTGCGTCA soxX 1434667 - 1435140 + | monoheme cytochrome c SoxX TERM 1204 1435171 - 1435147 - f 73 -9.3 -3.87062 | AAGGAATAATCCAAA CCCTTTCGGAC GCA GTCTGAAAGAG AATGAAGGAGATCAA soxY 1435189 - 1435605 + | sulfur oxidation protein SoxY soxZ 1435626 - 1435958 + | sulfur oxidation Z protein soxA 1435984 - 1436829 + | diheme cytochrome c SoxA TERM 1205 1436867 - 1436841 - f 100 -10.1 -6.36459 | gap 1, opp_overlap 1436842, overlap 1436842 CTGAACAAAAAAAAA GCCCCGC-CCGA GAGA TCGGCGCGGGGT TTTCTGGCACATGAC TERM 1206 1436866 - 1436842 - f 100 -13.6 -4.39435 | gap 1, opp_overlap 1436842, overlap 1436841 TGAACAAAAAAAAAG CCCCGC-CCGA GAGA TCGGCGCGGGG TTTTCTGGCACATGA TERM 1207 1436842 - 1436866 + F 100 -13.6 -4.37886 | gap 1, opp_overlap 1436842 1436841 TGAACAAAAAAAAAG CCCCGC-CCGA GAGA TCGGCGCGGGG TTTTCTGGCACATGA soxB 1436927 - 1438630 + | sulfur oxidation B protein soxC 1438660 - 1439946 + | sulfite dehydrogenase SoxC protein soxD 1439930 - 1440967 + | diheme cytochrome c SoxD soxE 1440972 - 1441676 + | cytochrome c2 TERM 1208 1441736 - 1441774 + G 100 -14.4 -4.59773 | opp_overlap 1441720 GCGCCTTTCTGGGCA CGGGTGCCGCCGCAATGG GAA CCCTTGCGGCGCCCGCCG TTTTTGCGGCTGGCC soxF 1441705 - 1442973 + | sulfide dehydrogenase flavoprotein subunit RD1_1520 1443054 - 1443494 + | hypothetical protein TERM 1209 1443843 - 1443897 + G 73 -10.7 -3.65224 | overlap 1443839 TCTGGATGTCTCTGC CAG-CCGCCAGTTGTCTGCCACCGGCA GCA TGTCGGGGGC-GATCATCGGCGGGCTG TTGTTCGGGTCGGGT RD1_1521 1443604 - 1444671 + | hypothetical protein TERM 1210 1444688 - 1444745 + T 73 -10.2 -3.46138 | gap 3, opp_overlap 1444688 1444689 1444697, overlap 1444688 GCGTCATGGGAAACA CC-TGAATCACCCATTGCTGTGTGAAACC AAA GGTTTCA-A-AGCGGTGGGTGATACGCGG TTATAATGGTAATTT RD1_1522 1445724 - 1444780 - | metallo-beta-lactamase family protein, putative RD1_1523 1446644 - 1445727 - | metallo-beta-lactamase family protein RD1_1524 1446868 - 1446704 - | hypothetical protein RD1_1525 1446993 - 1447982 + | immunogenic protein, putative TERM 1211 1448679 - 1448696 + G 84 -4 -5.29846 | overlap 1448678 GGCACGTTTCTGGAG CGAGCC AAGGGG GGCGCG TTTTTCTTTAACCTT TERM 1212 1449307 - 1449346 + G 72 -12.8 -3.05844 | gap 1 TTCGCATGATTGGCG TCACCGGTG-CCTGCGCCG CAG CGGGGCTGGTCATCGGTGG TATTACCATGACCGG RD1_1526 1448025 - 1449989 + | hypothetical protein nadC 1450054 - 1450869 + | nicotinate-nucleotide pyrophosphorylase TERM 1213 1451331 - 1451318 - g 74 -3.7 -4.78597 | opp_overlap 1451318 1451320, overlap 1451320 CGAAGAAGAAATAAA GCGGC GTCT GGCGC GCCTTGTGGAGCAAG RD1_1528 1450893 - 1452926 + | nucleoside phosphorylase RD1_1529 1454225 - 1453044 - | amidohydrolase family protein TERM 1214 1453333 - 1453296 - G 76 -7 -4.55128 | gap 1 ATTTGCAAAGCAAAA TGCGGTCGCAGCATCGA CATTC CCGAGGCT-CGACAGCA TGGCGACCATGCGCA TERM 1215 1454193 - 1454204 + g 70 -4.4 -4.43669 | CAGCAGTCCGATATT CTTG ATGA CAAG TTTGCTTTTTTCCGT marR 1454312 - 1454779 + | multiple antibiotic resistance protein MarR RD1_1532 1454922 - 1455764 + | dehydrogenase, putative mop 1455765 - 1458506 + | aldehyde oxidoreductase, putative RD1_1534 1458499 - 1459989 + | hypothetical protein RD1_1535 1459994 - 1460878 + | hypothetical protein RD1_1536 1460865 - 1461446 + | hypothetical protein TERM 1216 1461791 - 1461781 - g 71 -8.2 -4.08216 | overlap 1461782 CCAGGCCGTGGAAAA GGGC GCG GCCC TCGTGCCATCGTCGA RD1_1537 1461443 - 1462027 + | hypothetical protein TERM 1217 1462113 - 1462132 + F 71 -4.2 -4.56775 | overlap 1462100 AGGGCAGCGCCGCCG CCTGTGTG ATGC CGCAGAGG TTTTTGACGAAGCGT TERM 1218 1463198 - 1463176 - g 80 -9.8 -4.07124 | opp_overlap 1463175 1463177 TATGATGGAGACAAA CCACCACCTC TTC GGGATGGTGG CGTTGGTGTCCGGGC RD1_1539 1462487 - 1463470 + | C4-dicarboxylate binding protein, putative TERM 1219 1463523 - 1463476 - f 91 -14.2 -3.05816 | gap 1 TGATTTCTGATCCAA CTCACTTCGGCACGGGGCGGCCA CTG TGGCTGCCCGGTGCC-AATTGAA CAGACGAGAGACGCG RD1_1541 1463544 - 1464122 + | ABC transporte, permease protein, putative TERM 1220 1465300 - 1465310 + G 72 -2.4 -4.77036 | TCAAGGTCTTCCGCG TGGC CGT GCCC TTTTTCATCGTAACC RD1_1542 1464126 - 1465388 + | TRAP dicarboxylate transporter, DctM subunit TERM 1221 1465401 - 1465437 + T 100 -14.5 -4.62069 | gap 1, overlap 1465399 TAGGGCCTTTGGTGC CCACCACGCG-GGCTC TGTGTT GAGCGGCGCGTGGTGG TTTTTCAGGTCAAGG frpC 1468876 - 1465460 - | iron-regulated protein FrpC, putative TERM 1222 1467182 - 1467172 - G 72 -2.4 -4.74215 | ACACCAGCAACAAAA GGTC ATC GCCC GCGCCGCCAAAGACA TERM 1223 1467880 - 1467861 - G 70 -4.8 -4.50976 | CCTGATACCACAAAA GGCCCGCC ATCC GTCGTGCC GTCCGCGTTGAACCG RD1_1545 1468996 - 1469088 + | hypothetical protein TERM 1224 1470175 - 1470185 + G 93 -8.2 -5.03715 | overlap 1470164 1470174 TTATTCAGGGCGACC GCGC GCT GCGC TTTTTTGACCGTGAT nosR 1469238 - 1471397 + | nitrous-oxide reductase regulatory protein NosR nosZ 1471416 - 1473329 + | nitrous-oxide reductase nosD 1473333 - 1474580 + | nitrous oxide maturation protein nosF 1474570 - 1475472 + | copper transport ATP-binding protein NosF nosY 1475469 - 1476290 + | nitrous oxide maturation protein NosY nosL 1476287 - 1476799 + | nitrous oxide reductase accessory protein NosL nosX 1476796 - 1477698 + | nitrous-oxide reductase protein nosX, putative RD1_1553 1478464 - 1477772 - | cyclic nucleotide-binding protein TERM 1225 1478212 - 1478240 + g 70 -10.3 -3.55444 | opp_overlap 1478211 1478212 CCTCGGCCAGACAAT CGCCCTTGTGAAA GGC TTCCACGAGGGTG TTTGAACCGTCCACC hbaR 1478704 - 1479438 + | transcriptional activator, putative TERM 1226 1479689 - 1479677 - gT 70 -9.1 -3.62096 | CGCGATCAGGGGAAA GCGCA TGG TGCGC GTCTGGGCGGGTTGA RD1_1556 1479401 - 1479988 + | hypothetical protein norF 1480339 - 1480088 - | nitric oxide reductase F protein, putative norE 1480866 - 1480336 - | NorE protein TERM 1227 1480606 - 1480585 - G 81 -5.1 -4.87665 | gap 1 CTTGAGCCACAAAAA CACCATGCCC AGC AGGC-TGGCG GCCAACAGCCAAAGG norD 1482770 - 1480863 - | nitric oxide reductase D protein TERM 1228 1481294 - 1481254 - G 76 -6.8 -4.56775 | gap 1 ATCGGTTCGGAAAAA TCCTTGCACCGC-TCCACA TAGA CGCGGTTGCGGCGCAATGA CGAAAACGCGTGGAT TERM 1229 1481852 - 1481865 + g 89 -4.5 -5.1675 | GGGAGAGTTCCTCAA GGTCA TCCA TGGCC TTTTTTGCTGCCTCC TERM 1230 1481967 - 1481989 + g 71 -5.4 -4.35926 | overlap 1481968 CAGGATCAGGCTGTC GCGCCGTTCG GTC TGATCGGCGG TTTTGCGTTTGCCCT TERM 1231 1482678 - 1482626 - G 76 -12.8 -3.36569 | gap 2, opp_overlap 1482619 1482625, overlap 1482635 CCAAGCCCCGAAACA GCACCGAAAGGCGGGCGGTTTCATCT TCC AGATGGA-CCGCC-GCCTGCGGGTGC GTGGGTTCGGGCGCG TERM 1232 1482669 - 1482635 - G 76 -10.1 -3.72678 | gap 2, opp_overlap 1482619 1482625, overlap 1482626 GAAACAGCACCGAAA GGCGGGCGGTTTCATCT TCC AGATGGA-CCGCC-GCC TGCGGGTGCGTGGGT norQ 1483586 - 1482774 - | denitrification regulatory protein nirQ TERM 1233 1483539 - 1483557 + g 76 -13.1 -3.34962 | opp_overlap 1483539 TTGAGGCATGTAAAA GGGGGCG TCAGC CGCCCCC TTGTCAAGTGTGGGA TERM 1234 1483557 - 1483539 - G 95 -13.1 -4.19817 | opp_overlap 1483539 TTGAGGCATGTAAAA GGGGGCG TCAGC CGCCCCC TTGTCAAGTGTGGGA norB 1484953 - 1483583 - | nitric-oxide reductase subunit B norC 1485415 - 1484963 - | NorC-like protein TERM 1235 1485489 - 1485449 - R 74 -6.8 -4.26076 | overlap 1485451 1485454 1485488 GCAGGCCTATGAAAA CACGATGGTTAAGGCGGC GCGTT GCCGCCTTAACAAAAGTC AAGCTGGGCTCAGTT TERM 1236 1485487 - 1485451 - R 70 -9.4 -3.7331 | overlap 1485449 1485454 AGGCCTATGAAAACA CGATGGTTAAGGCGGC GCGTT GCCGCCTTAACAAAAG TCAAGCTGGGCTCAG TERM 1237 1485484 - 1485454 - R 86 -14.1 -2.96321 | overlap 1485451 1485449 CCTATGAAAACACGA TGGTTAAGGCGGC GCGTT GCCGCCTTAACAA AAGTCAAGCTGGGCT cycA 1485876 - 1485499 - | cytochrome c2 nosR 1487870 - 1485900 - | nitrous oxide reductase regulatory protein NosR TERM 1238 1487310 - 1487328 + g 80 -11 -3.84246 | overlap 1487315 GGCGAAGGCGCCCAT CTGGGTCA AGC TGGCCCAG TTTGCTGGTTCAAAG TERM 1239 1487841 - 1487823 - G 89 -12.4 -4.11216 | overlap 1487835 1487837 1487838 TGCCCACGCGTAAAA CGCGCTCC AAA AGAGCGCG AGGATCGCGAACATC nirS 1488045 - 1489742 + | nitrite reductase TERM 1240 1489731 - 1489746 + F 74 -7.6 -4.07568 | overlap 1489721 TTCAACACCCGCGCG GATGTC TACT GACATC TTTTGCGCAAACCGG TERM 1241 1489762 - 1489790 + F 100 -14.6 -4.57837 | opp_overlap 1489759 TTTTGCGCAAACCGG GCGCGGCAGG ACTCTCCCC CCTGCCGCGC TTTTTCCAACACTGT nirE 1489854 - 1490645 + | uroporphyrin-III C-methyltransferase nirC 1490638 - 1490955 + | cytochrome c (c55X) TERM 1242 1491415 - 1491425 + G 71 -6.8 -4.2349 | overlap 1491413 1491422 TGGATGCTCCCGGCG GACG GTT CGTC TTTTCCATGTGGGAC nirF 1490955 - 1492106 + | cytochrome cd1 nirD 1492117 - 1493121 + | nitrite reductase heme biosynthesis D protein nirG 1493111 - 1493560 + | nitrite reductase heme biosynthesis G TERM 1243 1494028 - 1494014 - g 76 -5.6 -4.6635 | AAATCCTCAAGAAAA CCGGTC TGC GACTGG CCAGTAAAGGAGCCA nirH 1493557 - 1494048 + | nitrite reductase heme biosynthesis H protein, putative TERM 1244 1494686 - 1494714 + GF 74 -11 -3.31157 | gap 1, opp_overlap 1494686 GAACCGGGGCGAAGA CGCAGG-GCATGC CCGC GCACGCTCCTGCG TTGATCTGCTGCTTG TERM 1245 1494714 - 1494686 - gf 84 -13.2 -3.02461 | gap 1, opp_overlap 1494686 GAACCGGGGCGAAGA CGCAGG-GCATGC CCGC GCACGCTCCTGCG TTGATCTGCTGCTTG nirJ 1494048 - 1495262 + | nitrite reductase heme biosynthesis J protein, putative TERM 1246 1496148 - 1496158 + GF 71 -4.6 -4.56597 | CGAGGCGATCGCTTC GTCC GAG GGGC TTTTTGCGCGCCGCC TERM 1247 1496215 - 1496226 + GF 71 -7.2 -3.96148 | GATTTCTTTTTCACG CCGG ATTA CCGG TTTCTGATCGGGGCC nirN 1495237 - 1496784 + | nitrite reductase protein N cbiX 1496741 - 1497493 + | CbiX protein, putative RD1_1575 1497490 - 1497726 + | hypothetical protein TERM 1248 1497836 - 1497855 + G 70 -3.4 -4.58283 | opp_overlap 1497831 1497851 ACTGGACCAACTGCG CGCCGAAG GGAA CTACCGCG TTTTTGCGGAACTTG hemA 1497792 - 1499006 + | 5-aminolevulinate synthase RD1_1577 1499281 - 1500342 + | glycosyl transferase, putative RD1_1579 1500548 - 1501972 + | polysaccharide biosynthesis protein, putative TERM 1249 1501977 - 1501951 - T 80 -9.4 -4.12188 | TCATGAGGCGCAAAA GGCGCTCAAACG TAT CTTCTGAGCACC CGCGATCCCTTGGTT RD1_1580 1503008 - 1502013 - | glycosyl transferase, putative TERM 1250 1502762 - 1502790 + g 85 -6.5 -4.84311 | overlap 1502776 GCGCCTGCGCAACTC CGTGGTTGCGTGC AGA GGACGCGCCCCCG TTTTCTTGTGTCAAA TERM 1251 1502823 - 1502807 - G 89 -12.3 -4.07568 | opp_overlap 1502820 TTTCTTGTGTCAAAA CCCGCAA GCG TTGCGGG TCGAGCGGCCAGTTT RD1_1581 1503060 - 1503164 + | hypothetical protein alkJ 1504837 - 1503197 - | alcohol dehydrogenase TERM 1252 1503257 - 1503277 + g 78 -6.7 -4.58663 | AGGCAGCGGTGCAAG GCCCCGCAC CAT GTCCGAGGC TTTTTCGCCAATCAT TERM 1253 1504378 - 1504394 + g 71 -9.3 -3.72576 | opp_overlap 1504365 1504364 ATGCCGTGCAGATGG GCAGCGC ACC GCGCGGC TTTGATACACCAAGG TERM 1254 1504730 - 1504754 + g 75 -2 -4.9218 | ACGGTCAGGACCGCC CGCCTCTAAC AGCAA GACAGAGGTG TTTTTGTCCTCGCTC RD1_1583 1505122 - 1506108 + | TRAP-type transporter, putative TERM 1255 1506120 - 1506148 + F 100 -18.9 -3.17714 | opp_overlap 1506111 1506118 1506117 GTAAATCTCAAAGCC CCTGAGCTGCGCC GCT GGCGTGGCTCAGG TTGATACGCATTTCC TERM 1256 1507344 - 1507326 - g 80 -11 -3.71848 | overlap 1507311 1507339 CCCCCTGATGAAGAA GGTCGGCT ACA AACCGACC ACGGCGGGTGCGGTT RD1_1584 1506223 - 1508451 + | hypothetical protein TERM 1257 1508931 - 1508909 - f 77 -8.4 -4.18018 | opp_overlap 1508909 CGGCTTCAGTTAAAA TTCCCGAGCC GAA AGCCCGGAAA ATTGGTTGACAGAAA TERM 1258 1510046 - 1510080 + G 80 -10.6 -4.08064 | opp_overlap 1510048, overlap 1510048 1510074 1510079 ATGGACATCCGCAAC CAGCGTCACTGCTGGC GAC GGCAGCGGTGACGGCG TTTTCGCCCGACGTT TERM 1259 1514492 - 1514480 - g 71 -6.9 -4.22652 | overlap 1514481 TGACATCACCGAAAA CGCGC AGA GCGCA CCCACCGTGACGGCA TERM 1260 1516909 - 1516892 - g 74 -5.5 -4.55287 | opp_overlap 1516907, overlap 1516893 TTCATCGACACAAAA CCAACCG GAGG CGGTCGA CCTTGGTGCTGGTCG TERM 1261 1518524 - 1518541 + G 76 -6.9 -4.46926 | overlap 1518526 CGATCCTACAGTCAC CGGCCTG CCCA CAGGCGG TTTTGTCGTCGGGTG TERM 1262 1518880 - 1518865 - g 73 -10.4 -3.6682 | opp_overlap 1518864 1518863 1518873 TTTCATCCACGCAAA GCGACG CCTC CGTCGC CATTCTGAGCGGCGG RD1_1585 1509048 - 1529096 + | VBCS repeat-containing protein TERM 1263 1529219 - 1529164 - T 89 -9 -4.62069 | gap 1, opp_overlap 1529168 1529168 1529215, overlap 1529149 1529165 1529166 1529178 GCGTCACGCGAAAAA CCGCG-ATCACGTAACGCGCTGGAAAC AAG GATTTCAGCGCGTTACGTGAAACTTGA TGTGTCAGGTATTTC TERM 1264 1529218 - 1529165 - T 73 -10.3 -3.3692 | gap 1, opp_overlap 1529168 1529168 1529215, overlap 1529149 1529164 1529166 1529178 CGTCACGCGAAAAAC CGCG-ATCACGTAACGCGCTGGAAAC AAG GATTTCAGCGCGTTACGTGAAACTTG ATGTGTCAGGTATTT TERM 1265 1529215 - 1529166 - T 78 -13.7 -2.61831 | gap 1, opp_overlap 1529168 1529168, overlap 1529149 1529165 1529164 1529178 GTCACGCGAAAAACC GCGATCACGTAACGCGCTGGAAAC AAG GATTTCAGCGCGTTACGTGAA-AC TTGATGTGTCAGGTA TERM 1266 1529168 - 1529214 + T 90 -17.4 -2.59177 | opp_overlap 1529149 1529166 1529165 1529164 1529178, overlap 1529168 CACGCGAAAAACCGC GATCACGTAACGCGCTGGAAAC AAG GATTTCAGCGCGTTACGTGAAA CTTGATGTGTCAGGT TERM 1267 1529168 - 1529215 + T 100 -17.2 -3.32498 | gap 1, opp_overlap 1529149 1529166 1529165 1529164 1529178, overlap 1529168 CACGCGAAAAACCGC G-ATCACGTAACGCGCTGGAAAC AAG GATTTCAGCGCGTTACGTGAAAC TTGATGTGTCAGGTA RD1_1586 1530266 - 1529274 - | aldo-keto reductase, putative TERM 1268 1530013 - 1529987 - G 72 -12.9 -3.08679 | opp_overlap 1529987 1530011, overlap 1529967 CCGTGTTATTGAACA CGCGCGCCCCG GTTTG CGGATCGCGCG AGATACCCGCTTTTG mexF 1533602 - 1530411 - | RND multidrug efflux transporter MexF TERM 1269 1531142 - 1531129 - GR 71 -8.1 -3.85092 | ACCACGGACACCAAA GTGCC CAAG GGCAC CAATGCGCCGGTGGC RD1_1588 1534785 - 1533556 - | RND efflux membrane fusion protein, putative TERM 1270 1534108 - 1534081 - GR 81 -7 -4.71318 | overlap 1534084 1534099 1534101 AATATCAAAAAAGAA GTAGATCGGATC AGAG GATACGATCGAC GTAAGCTCCGTCTGG RD1_1589 1536253 - 1534871 - | hypothetical protein TERM 1271 1534926 - 1534911 - G 72 -2.4 -4.77079 | CACACATCAAGAAAA GCGTCC GAAA AGTCGC TTGCAAGCTCAACCC TERM 1272 1535493 - 1535451 - G 74 -6.1 -4.49344 | AAACTGACCAGAAAA GGGGTGCGCGCGAACTG CTTGAAGCT CTGGTCGAGCGCATCCC CGGGAAACCTGAGGC tlpA 1536927 - 1536349 - | thiol:disulfide interchange protein tlpA, putative TERM 1273 1537193 - 1537206 + G 71 -8.1 -4.07885 | TGTCAGAAATCGAGG CGGGA AATT TCCCG TTTTCGACCGCGCTG argH 1536952 - 1538352 + | argininosuccinate lyase RD1_1592 1538334 - 1538528 + | putative lipoprotein RD1_1593 1538534 - 1538692 + | hypothetical protein RD1_1594 1538694 - 1539008 + | hypothetical protein TERM 1274 1539065 - 1539106 + F 73 -5.2 -4.60797 | gap 1, overlap 1539048 GCGGCAAAGGCTGAT TGATCTTGGC-TGCGCTTT TGCGT AAAGCGCGCGCATGGATCA TTTTCTCTATCGCGA TERM 1275 1539163 - 1539182 + G 76 -5.6 -4.68124 | gap 1, overlap 1539162 CGGTGCCCGAGATTG CGGC-CGCC GTG GGCACGCCG TTTTATCTCTATTCC lysA 1539099 - 1540364 + | diaminopimelate decarboxylase TERM 1276 1541616 - 1541630 + G 77 -3.4 -5.0133 | overlap 1541617 1541618 CCACGCGCGATTGTC CTGCCG GGT CGGCGC TTTTTTGACCCGGTG RD1_1596 1540407 - 1542998 + | hypothetical protein TERM 1277 1543027 - 1543015 - T 72 -4.1 -4.72272 | opp_overlap 1543016, overlap 1543016 GCGTTTGACGAAAAA CCCAT GGC ATGGA TTGCTGTGTGAAAAG RD1_1597 1543111 - 1542995 - | hypothetical protein TERM 1278 1543102 - 1543158 + g 73 -4.6 -4.62069 | gap 2, opp_overlap 1543102, overlap 1543104 1543111 AAATACCTGAAACAT CGAGTATCACGTAACGC-GT-TGAAATC CTT GATTTCAGGCAGCATTACGTGATTCAGG TTTTTCGCATGACGC RD1_1598 1544033 - 1543224 - | hypothetical protein TERM 1279 1543435 - 1543425 - G 71 -8.2 -4.06562 | opp_overlap 1543424 1543425, overlap 1543413 AATGGCAAGGATAAA CCCG CGC CGGG AGTTTCGTTTTTCCC TERM 1280 1543635 - 1543664 + g 70 -4.1 -4.59109 | overlap 1543637 TGGCCGCGTCTTTCG CTCAGGCGCCGGA TCAA TCTGGGGGCTGCG TTTTTGGGGGGTATC TERM 1281 1544271 - 1544281 + G 72 -2.4 -4.73108 | ATATCCCTTACACTT GCGC CGG GCTC TTTTCATTTTCTGAC ftsE 1544199 - 1544876 + | cell division ATP-binding protein, putative RD1_1600 1544876 - 1545766 + | cell division permease, putative RD1_1601 1545766 - 1546497 + | acyltransferase, putative RD1_1602 1546481 - 1547098 + | pyridoxamine 5'-phosphate oxidase family protein, putative lpdA 1548503 - 1547115 - | dihydrolipoamide dehydrogenase TERM 1282 1547679 - 1547693 + g 70 -10 -3.53811 | CGCGTCCAGACCCAG CCCTTC GGT GAAGGG TTTGCGGCCCGTGGC TERM 1283 1548228 - 1548255 + g 78 -7.1 -4.62069 | CTTGGTGTTCTGGCC GATGGTGTCTT CCTTGT AGGACATCATC TTTTTCCAATCCACC RD1_1604 1548516 - 1548650 + | hypothetical protein TERM 1284 1548626 - 1548638 + T 90 -10.5 -4.23758 | CGGTATGTCGTCGGT GCGCC GGT GGCGC TTTTGGGTGTAAACT RD1_1605 1549056 - 1548658 - | inner membrane protein RD1_1606 1549306 - 1549037 - | hypothetical protein RD1_1607 1549700 - 1549317 - | inner membrane protein TERM 1285 1550196 - 1550206 + r 78 -6.8 -4.58395 | opp_overlap 1550195 1550196 CTTCGACGTCAAAAG GTCC GCT GGAC TTTTTGCAAGATGGC sucB 1551766 - 1550270 - | dihydrolipoamide acetyltransferase TERM 1286 1550564 - 1550581 + g 81 -8.3 -4.58395 | overlap 1550566 1550567 CATGCTCAGCTTGCC GTCGCGC GCGC GCGCGCC TTTTTCGGCAATCGC kgd 1554730 - 1551770 - | alpha-ketoglutarate decarboxylase RD1_1610 1555233 - 1554727 - | hypothetical protein TERM 1287 1555266 - 1555305 + r 73 -10.5 -3.35992 | overlap 1555271 CTGGCGGGTACCGCC GGGCAGCGCCCGAACCG CCCTCA CGGGGCGGGCGCTTCGC TTCCTTAGCCTCGGT TERM 1288 1555271 - 1555300 + r 78 -12 -3.23899 | overlap 1555266 GGGTACCGCCGGGCA GCGCCCGAACCG CCCTCA CGGGGCGGGCGC TTCGCTTCCTTAGCC TERM 1289 1555406 - 1555394 - R 74 -10.5 -3.53012 | opp_overlap 1555388 1555383 GTTCGCCGCTCGAAA GCGCC ATT GGCGC ATTCGCTTCGCTTAT sucD 1556323 - 1555436 - | succinyl-CoA synthase, alpha subunit TERM 1290 1555603 - 1555640 + g 88 -2.5 -5.50723 | gap 1, overlap 1555619 CGGGAGGGGCTGTGC GGCCCGCGATGAATCCGG CAG TCGGCTTCCA-GCGGCCC TTTTTCTTTTCATCG RD1_1612 1556851 - 1556339 - | hypothetical protein RD1_1613 1557429 - 1556848 - | hypothetical protein RD1_1614 1557980 - 1557558 - | hypothetical protein TERM 1291 1557895 - 1557875 - G 71 -5.3 -4.35044 | opp_overlap 1557889, overlap 1557877 CGAGCCAAACATAAA CTGTCGATC CCA GATCGCCGG ATCCCAGGTCCGCCG TERM 1292 1557889 - 1557911 + g 76 -9.8 -3.73224 | opp_overlap 1557877 1557875 ACTGTCGATCCCAGA TCGCCGGATC CCA GGTCCGCCGA TTTCATGCGCGGTAC sucC 1559177 - 1557984 - | succinyl-CoA synthetase subunit beta TERM 1293 1558016 - 1558059 + g 95 -16 -3.76482 | TCACAATTTTCTGGG CACCGTCCTTGAGGTCATCG GCGG CGATGACATCGAGGCCGGAG TTGTTGATGATGTCC RD1_1616 1559319 - 1559609 + | hypothetical protein TERM 1294 1559616 - 1559658 + T 73 -6.3 -4.38712 | gap 1, opp_overlap 1559607 1559627 1559629, overlap 1559627 ACAGTATGAGGCTGC GCTCAAAAAAACGCCCCGGA CATG TCCGGGGTGTTTTGGTC-GC TTTTGTCAGGATCAG TERM 1295 1559627 - 1559648 + T 100 -13.7 -4.34771 | opp_overlap 1559627 1559629, overlap 1559616 CTGCGCTCAAAAAAA CGCCCCGGA CATG TCCGGGGTG TTTTGGTCGCTTTTG TERM 1296 1559648 - 1559627 - T 100 -11.5 -5.40072 | opp_overlap 1559627 1559616, overlap 1559629 CTGCGCTCAAAAAAA CGCCCCGGA CATG TCCGGGGTG TTTTGGTCGCTTTTG TERM 1297 1559646 - 1559629 - T 79 -12.7 -2.89655 | opp_overlap 1559627 1559616, overlap 1559627 GCGCTCAAAAAAACG CCCCGGA CATG TCCGGGG TGTTTTGGTCGCTTT mdh 1560632 - 1559670 - | malate dehydrogenase RD1_1618 1560780 - 1561535 + | integral membrane protein, putative RD1_1619 1561939 - 1561607 - | hypothetical protein TERM 1298 1562321 - 1562337 + G 74 -3.6 -4.80455 | overlap 1562323 CATGTTACATGCCAA CCGACC CCTGC GGTCCG TTTTATATTTGCCTG TERM 1299 1563150 - 1563133 - g 73 -4.7 -4.58685 | overlap 1563144 AAACGTTGGCAAAAA GGGACGC AATA GCAACCC TGAACGCGAGGTAGC citE 1562307 - 1563164 + | citrate lyase, beta subunit, putative RD1_1621 1563169 - 1563726 + | hypothetical protein RD1_1622 1563743 - 1563946 + | hypothetical protein TERM 1300 1564069 - 1564081 + G 71 -6.9 -4.24342 | CATATGCTCTACCCG GCGCG GCA TGCGC TTTATTCATCGGACC RD1_1623 1563946 - 1564980 + | MaoC family protein RD1_1624 1565052 - 1565786 + | hypothetical protein RD1_1625 1565842 - 1566507 + | von Willebrand factor type A domain-containing protein sdhC 1566662 - 1567045 + | succinate dehydrogenase, cytochrome b556 subunit sdhD 1567056 - 1567427 + | hypothetical protein TERM 1301 1567527 - 1567510 - gf 70 -9.9 -3.43328 | TATGAAACACATGAA TACGACG TTGT CGTCGTA GGAGCAGGCGGTGCT sdhA 1567480 - 1569285 + | succinate dehydrogenase flavoprotein subunit RD1_1629 1569245 - 1569643 + | hypothetical protein sdhB 1569669 - 1570448 + | succinate dehydrogenase iron-sulfur subunit TERM 1302 1570967 - 1570978 + G 76 -7.2 -4.45083 | overlap 1570966 GATGGTTCCCCTTGG GCCG CTGG CGGC TTTTATCGGTGTGAC RD1_1631 1570458 - 1571171 + | hypothetical protein TERM 1303 1571320 - 1571303 - g 74 -6.9 -4.40003 | CTGTACAAATACAAA TGCGCCG CCTG CGGGGCA GAAACCTATACCAAG RD1_1632 1571171 - 1571377 + | hypothetical protein RD1_1633 1571435 - 1572280 + | hypothetical protein deoD 1572987 - 1572283 - | purine nucleoside phosphorylase mutB 1575018 - 1573051 - | methylmalonyl-CoA mutase TERM 1304 1574137 - 1574152 + g 79 -8.2 -4.57073 | overlap 1574133 CGCAGGCAATTGCAC GGCGCG CGCG CGTGCC TTTTTGGACAGGGTG RD1_1636 1575269 - 1576639 + | acyltransferase, putative TERM 1305 1576834 - 1576820 - g 73 -4.2 -4.64598 | GAAGCACCCGAAAAA GATCTC TAT GAGGTC GGTGAGATGCCCCCC ccrA 1576775 - 1578055 + | crotonyl-CoA reductase, putative TERM 1306 1578086 - 1578113 + F 100 -15.6 -5.26875 | TTTTGAATGCTGAAG CCCGCGAATCAC CACA GTGAATCGCGGG TTTTTTACTTCAAGA rhlR 1578424 - 1579143 + | transcriptional activator protein RaiR, putative tral 1579259 - 1579897 + | autoinducer synthesis protein Tral, putative TERM 1307 1581177 - 1581196 + G 71 -6.3 -4.42386 | overlap 1581181 CCGTTCATCCCCTTT GCCGCGC GCATGG GCGCGAC TTTTCTGCATGGGGC RD1_1640 1580085 - 1581485 + | hypothetical protein TERM 1308 1581545 - 1581519 - T 73 -5 -4.62471 | overlap 1581528 GTCAAGCGCGAAAAA GCTTGAAAACGG CGG CCGCCCCCCAGC CTGCGGCGATGGCGA RD1_1641 1582278 - 1581505 - | hypothetical protein RD1_1642 1583219 - 1582281 - | integral membrane protein, putative RD1_1643 1584259 - 1583291 - | putative sugar ABC transporter, permease protein RD1_1644 1585353 - 1584259 - | putative sugar ABC transporter, permease protein TERM 1309 1585014 - 1584996 - G 72 -3 -4.7254 | overlap 1584997 1584998 ATGCTGCACCAAAAA GCCCCG CAGCCAC CGTGGC CGCGATAAGCGCAAC RD1_1645 1586935 - 1585358 - | sugar ABC transporter, ATP-binding protein TERM 1310 1586071 - 1586093 + g 81 -6.2 -4.8048 | overlap 1586072 1586073 TCAGACGCGCGACCT TTTGCTCGTC CAC GACGCGCAGG TTTTTGATGTCCAGA RD1_1647 1587909 - 1586914 - | putative sugar ABC transporter, periplasmic sugar-binding protein TERM 1311 1587028 - 1587040 + g 75 -7.7 -4.2828 | CATCTCTTCGGTCAC CAACG AGG CGTTG TTTTCGTCCATCGCA TERM 1312 1588023 - 1588035 + r 83 -6.2 -4.98255 | GGCCTAAGGCATTGG CCGG GTCAA CCGG TTTTTGTCCTTCAGG RD1_1648 1588477 - 1588046 - | ribosomal-protein-alanine acetyltransferase, putative RD1_1649 1589088 - 1588474 - | glycoprotease family protein, putative RD1_1650 1589698 - 1589135 - | NifU-like domain-containing protein TERM 1313 1589817 - 1589786 - R 72 -3.9 -4.6902 | gap 2, overlap 1589787 GCACAATGCGAAAAA CCTTGA-T-CAGGCA ACGC TGCCTGAAATCAAGA ATATCAACGCGTTAC RD1_1652 1590383 - 1589928 - | hypothetical protein TERM 1314 1590392 - 1590375 - G 72 -2.6 -4.78107 | overlap 1590377 GAGTACCACCAAAAA CTTGCG CATGAT CGCACG CTCCCCTGTTGGCGC TERM 1315 1590708 - 1590693 - g 83 -2.6 -5.24129 | gap 1 GTCCGTCAGAAAAAA TCG-ACA CAC TGTTCGA AAAGATACGCAGGGA RD1_1653 1590521 - 1590916 + | photopigment and puc activator ilvE 1591777 - 1590911 - | aminotransferase TERM 1316 1591369 - 1591407 + g 71 -9.5 -3.72576 | overlap 1591370 GCCTGAAACTGGTGC GCCCGA-GGCTCACGGCCG TAT CCGCCG-GGGCCATCGGGA TTTCCTCAAGCGAGA RD1_1655 1592076 - 1591849 - | hypothetical protein RD1_1656 1592204 - 1592914 + | M48 family peptidase putative RD1_1657 1593304 - 1592915 - | hypothetical protein TERM 1317 1593259 - 1593279 + g 74 -3.1 -4.81212 | overlap 1593250 1593258 TGCACACGGGGCAGG CCGCGTTGT ACA GCACGGCGG TTTTATTGTCGTCGG RD1_1658 1593619 - 1593377 - | hypothetical protein RD1_1659 1595061 - 1593682 - | RNA modification protein TERM 1318 1594996 - 1595016 + g 74 -11.1 -3.53224 | overlap 1594988 CGGCTGTCCGGGACG GTCCGGTTG CGT CAGCCGGGC TTTGGGCGCAAGATC TERM 1319 1595607 - 1595584 - g 71 -8.8 -3.83998 | CCATGGCAGATGAAA GCCGCACGAT CAGC ATCGAACGGC TGAGCGTTACAAATG TERM 1320 1596234 - 1596253 + G 71 -7.8 -4.12456 | overlap 1596237 TCGAAATCCCCGATT GATGCCAG CGCA CTGGCCTC TTTTAACGGTGATAT RD1_1660 1595127 - 1597079 + | AsmA family protein kdsA 1598004 - 1597171 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 1321 1597578 - 1597594 + g 81 -7.9 -4.66833 | TCGACATCTCCCAGG GGGCCAG AAA CTGTCCC TTTTTGACGTTGACC RD1_1662 1598206 - 1598006 - | hypothetical protein RD1_1663 1598408 - 1599004 + | hypothetical protein RD1_1664 1599484 - 1600167 + | hypothetical protein RD1_1665 1600340 - 1600864 + | hypothetical protein TERM 1322 1600893 - 1600933 + GF 71 -8.2 -3.82084 | opp_overlap 1600865 1600900, overlap 1600900 TCCGATCGAACAAAG CCAAAAATCCCCGTTGCG CATGT CGCGGCGGGGATTGCTCG TTCTTGCTGTTGCGG TERM 1323 1600900 - 1600926 + GF 88 -13.7 -3.33573 | opp_overlap 1600900, overlap 1600893 GAACAAAGCCAAAAA TCCCCGTTGCG CATGT CGCGGCGGGGA TTGCTCGTTCTTGCT TERM 1324 1600926 - 1600900 - gf 100 -9.3 -4.86939 | opp_overlap 1600900 1600893 GAACAAAGCCAAAAA TCCCCGTTGCG CATGT CGCGGCGGGGA TTGCTCGTTCTTGCT TERM 1325 1601012 - 1600991 - gf 72 -11.5 -3.02829 | overlap 1601004 CACAGTGGTTCAACA TCCTCGCCG AAAA CGGCGAGGC CGCGCTGAGCGCCCC TERM 1326 1601014 - 1601004 - gf 77 -8.2 -4.07885 | overlap 1600991 CATCCTCGCCGAAAA CGGC GAG GCCG CGCTGAGCGCCCCGG RD1_1666 1600864 - 1601358 + | hypothetical protein RD1_1667 1601319 - 1601453 + | hypothetical protein opgH 1603356 - 1601464 - | glucosyltransferase MdoH mdoG 1604879 - 1603353 - | glucan biosynthesis protein G opgC 1606099 - 1604879 - | hypothetical protein TERM 1327 1605077 - 1605058 - G 79 -9.2 -4.26903 | opp_overlap 1605057 1605056 TGGAGGTGATGAAAA CGGCCAGC GACT GCTGCCCG ACTTTCATGATGACG TERM 1328 1605550 - 1605508 - G 75 -14.1 -2.90075 | gap 1, overlap 1605510 GCGCCCCGAACCAGA CACCGACGATCAGCGCGCCC GCCA GGGCGGGATGAGCG-CGGTG GCAGGCAATCACCAG RD1_1671 1607488 - 1606148 - | hypothetical protein TERM 1329 1607020 - 1607010 - G 79 -8.2 -4.55491 | overlap 1607011 CACCCAAGGATAAAA CCGC GCA GCGG GTGATCCGCATCATG RD1_1673 1608882 - 1607674 - | CAIB/BAIF family protein TERM 1330 1607967 - 1607995 + g 79 -9.5 -4.19817 | TGCGGGACAGTCGAT CTGCGATCTGCGG GAT CAGCACATCGCGG TTTTCAATGCGTGCA alsS 1610488 - 1608866 - | acetolactate synthase, putative RD1_1675 1611172 - 1610609 - | hypothetical protein TERM 1331 1611216 - 1611193 - H 84 -8.8 -4.27316 | TTCCCCAATTCAAAA GGCGGCCC AAGGATCA GGACCGCC ACCGTGTCAGCGTAG TERM 1332 1612175 - 1612185 + G 74 -6.8 -4.37067 | GCGCGATCTGTGTGA CACC CAT GGTG TTTTGCTGATCTTTG TERM 1333 1612220 - 1612236 + G 70 -3.5 -4.60041 | overlap 1612222 AGTGCAATGCGGCGT GGCGCGC ACG GGGCGGC TTTTTGCACATGAAT argD 1611561 - 1612736 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 1334 1612897 - 1612875 - g 71 -5.4 -4.30576 | overlap 1612876 1612886 1612887 CCGCCATCATGAAAA GCGCGCGCAA AGG TCGCCCGCGT GGGGCCCCGGATGAC argF 1612796 - 1613722 + | ornithine carbamoyltransferase hrpB 1616271 - 1613830 - | ATP-dependent helicase HrpB TERM 1335 1615277 - 1615335 + g 76 -6.5 -4.46212 | gap 2, opp_overlap 1615276, overlap 1615277 1615278 CATAGTTTGTAACAG G-CACCGGGGGCGAGGCG-ACCGGCGCGT CCC GCGCGCTGGCGTGCCTCGGCCTTGGACAC TTTTGTCGTCACCAG TERM 1336 1615392 - 1615380 - G 85 -6.9 -4.7254 | overlap 1615381 1615382 ATGCCGCATCAAAAA CCGCG CGC CGCGA CAGGCCCGCATCCAC RD1_1679 1616365 - 1617354 + | arginine/ornithine transport system ATPase TERM 1337 1617418 - 1617441 + F 88 -11 -4.13654 | gap 1 AGCGAACGAATTTCC GGGGTTCGGCG TGA CGCC-AGCCCC TTTGTCGTTTACCGG rpmB 1617428 - 1617790 + | ribosomal protein L28 TERM 1338 1617811 - 1617847 + F 95 -12.4 -4.46212 | gap 1, overlap 1617816 CGTGCAAGAAGTCTT GT-AAGGGCTCCGACCT GAAA AGGTCGGGGCCTTTCGC TTTTGTGCTGGAAAG TERM 1339 1617816 - 1617841 + F 100 -16.9 -3.97308 | overlap 1617811 AAGAAGTCTTGTAAG GGCTCCGACCT GAAA AGGTCGGGGCC TTTCGCTTTTGTGCT TERM 1340 1617887 - 1617905 + G 73 -8.8 -3.91412 | overlap 1617869 CCGGATCGTATAATC GGGGCATG TTG CGTGCCTC TTTATCCCCTGTGCT RD1_1681 1617850 - 1618245 + | hypothetical protein RD1_1682 1618291 - 1618785 + | hypothetical protein npdA 1619490 - 1618798 - | NAD-dependent deacetylase RD1_1684 1619629 - 1620504 + | hydrolase, putative infA 1620581 - 1620799 + | translation initiation factor IF-1 maf 1620803 - 1621369 + | septum formation protein Maf, putative TERM 1341 1622230 - 1622256 + G 74 -11.6 -3.53343 | GTCCTTGATCTGGCC CCGATGCCGA AAAAGGA TCGGCGTCGG TTTGAAACGGCGCTT RD1_1687 1621366 - 1622388 + | ribonuclease G, putative RD1_1688 1622385 - 1622582 + | hypothetical protein RD1_1689 1624169 - 1622598 - | putative potassium efflux transporter TERM 1342 1624101 - 1624087 - GT 71 -5.6 -4.42386 | opp_overlap 1624092 1624095, overlap 1624088 1624091 CCCGCAGTCAGAAAA CCCACC AGC GGTGGC AGCCCCAGCGGTTTT RD1_1690 1624345 - 1624079 - | hypothetical protein rrf 1624813 - 1624370 - | transcriptional regulator, putative RD1_1692 1624896 - 1625051 + | hypothetical protein RD1_1693 1625141 - 1625431 + | hypothetical protein TERM 1343 1625515 - 1625527 + G 76 -6.9 -4.53857 | CGGTGTTTTTTCCTA CGGCT TCC GGCCG TTCTTTCTTTTTGGT nnrS 1625456 - 1626661 + | NnrS protein, putative nnrU 1626658 - 1627326 + | NnrU protein, putative hemN 1627549 - 1628898 + | coproporphyrinogen III oxidase bchE 1629156 - 1630820 + | magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase TERM 1344 1630961 - 1630983 + F 72 -12 -2.79796 | CCTGCGCGCTTTTCA GTGCGACCTG TTG CAGGTTGCGC TGTCCTGCGGTGCGA TERM 1345 1631716 - 1631728 + G 76 -9.1 -4.07568 | GGCGGTTGTCGAGAT GCCGT ATG ACGGC TTTTCGCAGGAAGAC RD1_1698 1631057 - 1632271 + | glycerophosphoryl diester phosphodiesterase family protein, putative RD1_1699 1633922 - 1632471 - | sugar transferase TERM 1346 1632576 - 1632588 + g 73 -4.7 -4.63527 | opp_overlap 1632576 CAGATCGTGTTCAAA GCGGG CTT CCAGC TTTTTGGCGTCATCA RD1_1700 1635086 - 1634085 - | AraC family transcriptional regulator TERM 1347 1634464 - 1634491 + g 71 -7.8 -4.07568 | gap 1 CGGTCGGCTTCCATC GCCTCGTCGATCA TCA TGATGGAC-AGGC TTTTGCGCGCGGCGG TERM 1348 1635376 - 1635353 - g 73 -8.8 -3.9122 | TACCTTGCGAAAGAA CACGGCATCA CGAA TGTCGCCGTG ATCGAAAAAGGTTGG soxB 1635191 - 1636444 + | sarcosine oxidase, beta subunit TERM 1349 1636676 - 1636688 + G 82 -9.1 -4.3739 | ATGCCCTGCGGGACA CGGTC AGT GACCG TTTTGTCACAACCTA soxD 1636456 - 1636755 + | sarcosine oxidase, delta subunit soxA 1636752 - 1639754 + | sarcosine oxidase, alpha subunit soxG 1639768 - 1640298 + | sarcosine oxidase, gamma subunit, putative RD1_1707 1641601 - 1640453 - | major facilitator transporter RD1_1708 1642449 - 1641679 - | hypothetical protein TERM 1350 1644254 - 1644269 + G 70 -3.2 -4.63486 | TCCGACCGGCGATTT TGAAGG TTGA CCGTCA TTTTATTCAGCCGAT RD1_1709 1642702 - 1644561 + | GGDEF/EAL domain-containing protein RD1_1710 1644796 - 1644894 + | hypothetical protein RD1_1711 1644913 - 1645179 + | hypothetical protein RD1_1712 1645414 - 1645151 - | hypothetical protein TERM 1351 1645193 - 1645216 + g 71 -9 -3.70902 | gap 1, opp_overlap 1645190 1645186 1645184 GAACCACATAACGCT GC-CTGAAATC AAG GATTTCAGCGC TTTACGTGTCAAGGG RD1_1713 1646550 - 1645414 - | acyl-CoA dehydrogenase domain-containing protein TERM 1352 1645781 - 1645800 + g 85 -5.7 -5.09173 | overlap 1645783 AAGGGACGGCCGAAT TGCCTGC GTTCGA GCAGGTA TTTTTTCGCATGTTC TERM 1353 1646049 - 1646024 - G 89 -6.7 -5.04175 | gap 1 CCAAGGACATAAAAA CCGGGCG-GTTC AAT GCCCGCGCCCGG GTCCACATGAACGAT RD1_1714 1647045 - 1646731 - | hypothetical protein RD1_1715 1648704 - 1647154 - | putative TRAP dicarboxylate transporter, DctM subunit TERM 1354 1647897 - 1647873 - G 71 -7.2 -4.25104 | gap 2, opp_overlap 1647873, overlap 1647829 GCCCGGCCATCAAAA GCGCTCCGATCG CGC CGA-CGGAG-GC CGCTTCTGTCGGGGT RD1_1716 1649198 - 1648701 - | TRAP transporter, DctQ-like membrane protein, putative TERM 1355 1648786 - 1648773 - G 71 -5.9 -4.40237 | opp_overlap 1648773, overlap 1648765 GATGAGACAGCAAAA CGCCG GGAT CAGCG ATTTGAGCAGAAAGA RD1_1717 1650346 - 1649261 - | solute-binding family 7 protein RD1_1718 1650501 - 1650379 - | hypothetical protein hutC 1650682 - 1651383 + | histidine utilization repressor, putative TERM 1356 1652065 - 1652097 + G 81 -5.4 -4.77757 | overlap 1652066 TCCTCGCGCTGTTCG ACGTGCCATGGACC CCTTT GTTCCTTGGCGCGA TTTTCATTTTTCACC prsD 1651647 - 1653377 + | type I secretion system ATPase TERM 1357 1654627 - 1654611 - g 71 -6.5 -4.25283 | opp_overlap 1654611 AGGCCTTCATCAAAA CGGCG GAACGCT CGCCG TTGAATTATCTGGCC RD1_1721 1653374 - 1654687 + | HlyD family type I secretion membrane fusion protein TERM 1358 1654879 - 1654915 + GF 71 -10.7 -3.21099 | opp_overlap 1654914, overlap 1654880 ATTGACCCGCCGTTC ACTTGTCACGGCCAGCG CGG CGGCGGCCGCGACAAGC TTGATCCTGCCCGCG TERM 1359 1654880 - 1654914 + GF 81 -14.2 -2.52516 | overlap 1654879 TTGACCCGCCGTTCA CTTGTCACGGCCAGCG CGG CGGCGGCCGCGACAAG CTTGATCCTGCCCGC RD1_1722 1654865 - 1655098 + | hypothetical protein RD1_1723 1654992 - 1655246 + | hypothetical protein TERM 1360 1655587 - 1655597 + G 72 -2.4 -4.79451 | CGCTTCTTTTTGTCT CGCC CAC GCCG TTTTCTCTTTGGGGT RD1_1724 1655259 - 1655870 + | hypothetical protein nagA 1657049 - 1655919 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1361 1656618 - 1656633 + g 74 -6 -4.57073 | opp_overlap 1656615 CGGGCGGATCAAGGC GGGGTC ATGC GCCCCC TTTTTGGCAAGGCTC TERM 1362 1656702 - 1656729 + g 75 -13.4 -2.87931 | gap 1 CACCTTGCGTTCAAT GGCCGCCG-CGAC GGC GTCGACGGCTGCC TGTGTGCGCGCTGGC RD1_1726 1658074 - 1657046 - | SIS domain-containing protein RD1_1727 1658835 - 1658071 - | GntR family transcriptional regulator RD1_1728 1659725 - 1658832 - | putative N-acetylglucosamine kinase TERM 1363 1659015 - 1658977 - G 72 -11.9 -3.38224 | gap 2, opp_overlap 1658983, overlap 1658979 1658983 ACCCCACCTGAAAGA CA-CAAAGCGGCCG-TCTC GGC GAGATCCGCCGCTTTGATG CAGGCGTTCAGATAG TERM 1364 1659012 - 1658979 - G 82 -14.7 -3.26031 | gap 1, opp_overlap 1658983, overlap 1658977 1658983 CCCACCTGAAAGACA CAAAGCGGCCG-TCTC GGC GAGATCCGCCGCTTTG ATGCAGGCGTTCAGA TERM 1365 1658983 - 1659008 + g 71 -9.7 -3.73072 | gap 1, opp_overlap 1658979 1658977 1658983 CCTGAAAGACACAAA GCGGCCG-TCTC GGC GAGATCCGCCGC TTTGATGCAGGCGTT TERM 1366 1659008 - 1658983 - G 79 -9.7 -4.27886 | gap 1, opp_overlap 1658983, overlap 1658979 1658977 CCTGAAAGACACAAA GCGGCCG-TCTC GGC GAGATCCGCCGC TTTGATGCAGGCGTT TERM 1367 1659240 - 1659221 - G 78 -13.6 -3.16564 | overlap 1659230 CTTGCAGGCCATCAA GCGCCAGA ACGG TCTGGCGC AAGGCGCGTTGCCCG RD1_1729 1660166 - 1661422 + | sugar ABC transporter, periplasmic sugar-binding protein TERM 1368 1661468 - 1661436 - f 81 -11.9 -3.53343 | opp_overlap 1661438, overlap 1661437 AACGCCTGCGGCAAA TCCCCCGGGGCGA TGCATGC TCGCCCCGGGGTT TGACCCGCGCTGACA TERM 1369 1661467 - 1661437 - f 83 -15.4 -2.71791 | opp_overlap 1661438, overlap 1661436 ACGCCTGCGGCAAAT CCCCCGGGGCGA TGCATGC TCGCCCCGGGGT TTGACCCGCGCTGAC TERM 1370 1661438 - 1661466 + F 100 -18.9 -3.53444 | opp_overlap 1661437 1661436 CGCCTGCGGCAAATC CCCCGGGGCGA TGCATGC TCGCCCCGGGG TTTGACCCGCGCTGA TERM 1371 1661802 - 1661813 + G 71 -7.2 -4.19276 | GCGCTATTGTCATCC CCGC GTCT GCGG TTTTCGGCGTTTTAC RD1_1730 1661502 - 1662425 + | putative sugar ABC transporter, permease protein TERM 1372 1663141 - 1663121 - g 72 -2.6 -4.76312 | opp_overlap 1663122 1663123, overlap 1663113 1663122 1663123 CAGAAGAGGTAAAAA CGCTGAC-GC TCG GCAGTCAG-G TCTTTATCGGGCAGT RD1_1731 1662439 - 1663278 + | putative sugar ABC transporter, permease protein TERM 1373 1663434 - 1663458 + G 90 -14.9 -3.44051 | GATGATTTTTATGCG GCGCTGAGCGC CAC GCGCCCGGCGC TTGTGGTGATCGCAA RD1_1732 1663275 - 1664303 + | oxidoreductase, putative RD1_1733 1664300 - 1665298 + | sugar ABC transporter, ATP-binding protein, putative RD1_1734 1665832 - 1665320 - | putative lipoprotein RD1_1735 1666323 - 1665814 - | hypothetical protein RD1_1736 1666253 - 1666387 + | hypothetical protein RD1_1737 1667605 - 1666355 - | peptide ABC transporter, permease component, putative bceA 1668303 - 1667602 - | bacitracin export ATP-binding protein TERM 1374 1668166 - 1668194 + g 73 -8.8 -3.99405 | CAGCGTGGATTTCCC CGACCCGCTTGC CCCCA GCAAGAGCGTCG TTTCTCCTGCGTTGA RD1_1739 1668973 - 1668317 - | hypothetical protein TERM 1375 1669054 - 1669071 + H 79 -3.3 -5.25906 | gap 1, opp_overlap 1669054 GTCTGATGCAAATCA CCTG-CGC AGA GCGGCTGG TTTTTGTTACTTTAT TERM 1376 1669241 - 1669219 - H 73 -5.5 -4.67011 | opp_overlap 1669218 1669235 AAGCGTAGTGAAAAA GACCGCGCA GAAGG TGCGTGATC ATCCTTATCATGTCT pcm 1669444 - 1670097 + | protein-L-isoaspartate O-methyltransferase, putative RD1_1742 1670179 - 1671579 + | TolC family type I secretion outer membrane protein RD1_1743 1671652 - 1672395 + | hypothetical protein TERM 1377 1672713 - 1672765 + G 70 -3.2 -4.64657 | overlap 1672703 1672728 1672742 GGGGGCTGTTGCTGG CGC-TCGCCATCCGGAGGCGCGCGCC ATG GGCG-GTGGCTTTGAGCGGCGCCGCG TTTTTGCACCTTTGC RD1_1744 1672532 - 1673044 + | hypothetical protein TERM 1378 1673069 - 1673050 - T 100 -12.8 -5.0916 | opp_overlap 1673050 GGCCCAATAGAAAAA CGCGCCCG GAAG CGGACGCG TTTTTGTCTGGGATA TERM 1379 1673050 - 1673069 + T 100 -10.6 -4.9792 | opp_overlap 1673050 GGCCCAATAGAAAAA CGCGCCCG GAAG CGGACGCG TTTTTGTCTGGGATA RD1_1745 1673414 - 1673094 - | hypothetical protein TERM 1380 1673488 - 1673498 + H 90 -8.2 -4.68424 | opp_overlap 1673477 GGAACCGGAGTGATT CGGG TAC CCCG TTTTTGCATACCTTC TERM 1381 1673932 - 1673948 + G 89 -10.1 -4.58395 | overlap 1673933 TGCCTGCGGAGCTTT TGGGCGA ACG TCGCCCG TTTTTGCAGGATGGC TERM 1382 1673933 - 1673947 + G 72 -11.4 -3.34716 | overlap 1673932 GCCTGCGGAGCTTTT GGGCGA ACG TCGCCC GTTTTTGCAGGATGG efp 1673634 - 1674197 + | elongation factor P RD1_1747 1674973 - 1674236 - | aminomethyl transferase family protein, putative TERM 1383 1674321 - 1674349 + g 71 -7.4 -4.27584 | gap 2 GCCAGTGCCCTGTCG CCCGCACGGCTGTG CAG CAC-GCCG-GCTGG TTTTCCATTCGCAGT RD1_1748 1675041 - 1675715 + | glycosyl transferase, putative RD1_1749 1677565 - 1675712 - | efflux ABC transporter, transmembrane ATP-binding protein, putative TERM 1384 1677978 - 1677990 + G 76 -9.1 -4.12902 | ATCGGGTGCTGGTCC CTGCC ACG GGCAG TTTTGGCCATGATTG sgaA 1677707 - 1678939 + | serine--glyoxylate aminotransferase, putative RD1_1751 1679130 - 1678912 - | hypothetical protein RD1_1752 1680288 - 1679185 - | histidinol-phosphate aminotransferase RD1_1753 1680402 - 1681190 + | enoyl-CoA hydratase valS 1684323 - 1681228 - | valyl-tRNA synthetase RD1_1756 1684998 - 1684399 - | hypothetical protein RD1_1757 1685873 - 1684995 - | phytanoyl-CoA dioxygenase, putative TERM 1385 1686154 - 1686169 + G 91 -8.2 -4.85433 | opp_overlap 1686152, overlap 1686153 1686165 TACGTGGATGATATC GCGCCT GAGG GGGCGC TTTTTGCCTTTGTGT TERM 1386 1686358 - 1686389 + G 77 -8 -4.42386 | gap 1 ATGGGCGCGGCCCCC CGCAGACCGATCCTC GCC GAGGAGC-GTATGCG TTTTGTGGGTGAGCC TERM 1387 1687397 - 1687387 - g 75 -2.4 -5.00616 | overlap 1687388 1687389 GCCGCGCGCAAAAAA GCCG ATG CGGA CCGGGGTCTGCTGCG RD1_1758 1686067 - 1688364 + | dehydrogenase, putative RD1_1759 1688342 - 1689421 + | hypothetical protein TERM 1388 1689467 - 1689493 + T 75 -6.4 -4.66163 | opp_overlap 1689427 1689489 CTGAGATCCGCCGCC CTGCCTGATGCG CTC CGCTAAAGGCAG TTTTTGCCTCCGCAT TERM 1389 1689633 - 1689651 + T 70 -8.8 -3.70149 | opp_overlap 1689636, overlap 1689636 GCCCCAAAACAAAGG CAACTGCG ACG CGCAGGTG TTTAAATACTGTCCA RD1_1761 1690168 - 1689686 - | thioesterase family protein metF 1691098 - 1690229 - | 5,10-methylenetetrahydrofolate reductase TERM 1390 1690607 - 1690589 - G 93 -6.6 -5.27335 | GGCCTCAAAGAAAAA CTGCGTGA TCG CCTCGCAG GCGCCTGCGTCAACC metR 1691186 - 1692091 + | HTH-type transcriptional regulator metR RD1_1764 1693125 - 1692268 - | hypothetical protein TERM 1391 1693177 - 1693158 - R 100 -10.7 -5.52384 | TTTTTATTAAAAAAA GGCAGCG TGAATC CGCTGCC TTGCACATCATAGAT RD1_1765 1693514 - 1693287 - | hypothetical protein RD1_1766 1694002 - 1693511 - | hypothetical protein cycH 1695240 - 1693999 - | cytochrome c-type biogenesis protein CycH RD1_1768 1695721 - 1695485 - | hypothetical protein RD1_1769 1695377 - 1696066 + | hypothetical protein TERM 1392 1696093 - 1696118 + FH 100 -13.3 -4.08394 | gap 1, opp_overlap 1696087 1696090 CACTGAAACCTACGA GGGCGCGC-GTG TGA CACCGTGCGCCC TTTTGCGCCAGATGT RD1_1770 1696158 - 1696664 + | hypothetical protein TERM 1393 1696726 - 1696754 + G 90 -14.5 -3.5511 | overlap 1696724 GGTGTCGTGGGGGTC GTGCCCGCCGCGT CGC GTGCTGCGGGCAC TCTTTATGACTGCAC RD1_1771 1696669 - 1697103 + | hypothetical protein sodB 1697214 - 1697813 + | superoxide dismutase (Fe) TERM 1394 1697840 - 1697866 + T 100 -16.6 -4.73388 | GTTAAGTTGTTGCAG CCCCGTGTCATC GTT GATGGCGCGGGG TTTTTCGTAGCGATT RD1_1773 1698559 - 1697993 - | decarboxylase, putative RD1_1774 1698685 - 1699971 + | lysM domain-containing protein TERM 1395 1700117 - 1700107 - g 80 -3.2 -5.12971 | overlap 1700110 AACATCGAAGAAAAA GAAC GCC GCTC GGGATGGCGGACCAT TERM 1396 1700143 - 1700110 - g 73 -4.6 -4.64495 | opp_overlap 1700122, overlap 1700107 ATCGAAGAAAAAGAA CGCCGCTCG-GGATGG CGGA CCATCCGCAAG-GTCG CGCCGTATCTCTGGC RD1_1775 1700044 - 1701882 + | ABC transporter, ATP-binding protein, putative TERM 1397 1702585 - 1702567 - g 71 -5.3 -4.32857 | overlap 1702569 1702575 GTGTTCAAATACAAA TACGCAA AGCTG TTGCGCA ATCCGCAGCGCATCG RD1_1776 1701949 - 1702641 + | hypothetical protein RD1_1777 1703149 - 1702694 - | hypothetical protein RD1_1778 1707023 - 1703226 - | AcrB/AcrD/AcrF family protein, putative TERM 1398 1703567 - 1703551 - G 70 -4.3 -4.56597 | overlap 1703552 CCGCCTTCGGAAAAA TTCAGGC TCA GCCCGAG CATCATCGGCGCAAG TERM 1399 1706078 - 1706107 + g 74 -11.3 -3.48276 | overlap 1706079 TGCCCACATGCACCG CCGAGCGCAGGCC TTCC GGCCAGCGTTCGC TTCTCTCGGCCACGA TERM 1400 1706079 - 1706106 + g 76 -14.8 -2.68823 | overlap 1706078 GCCCACATGCACCGC CGAGCGCAGGCC TTCC GGCCAGCGTTCG CTTCTCTCGGCCACG TERM 1401 1706225 - 1706209 - G 95 -15.1 -4.07568 | GTTTCCCCGTCAAAA CGCGCGG TCC CCGCGCG GTCCTCAAAAGTGAG RD1_1779 1708258 - 1707020 - | hypothetical protein TERM 1402 1708734 - 1708755 + G 74 -6.5 -4.36914 | gap 1, opp_overlap 1708731, overlap 1708724 1708725 GACACCGCAACACCC GGCGCGGCCG CCG TGGT-GCGCC TTTTGTCCGCCGCCG RD1_1780 1708380 - 1709150 + | hypothetical protein RD1_1781 1709222 - 1710565 + | PQQ repeat-containing protein TERM 1403 1710686 - 1710702 + G 76 -12.3 -3.35679 | GTTCAACCGTCTGGT GGGCAAG CGT CTTGCCC TTGTGGATGACCAGC engA 1710618 - 1712096 + | GTP-binding protein EngA RD1_1784 1712915 - 1712196 - | hypothetical protein TERM 1404 1712315 - 1712366 + g 73 -10 -3.66908 | gap 1, opp_overlap 1712336, overlap 1712312 1712312 TGTTCTGTACGACGA TTGCGACCAGCGCCCAGATGACGGC GAT GCCGT-AGCTTGGCGCGCGGCGCAG TTGGTTTTGCACCGC TERM 1405 1713729 - 1713712 - g 78 -4.8 -4.7373 | gap 1 GCACTGGATGAAAAA CGCGCGC TTTTT GCGC-CG GCCTTGTGGGATAAT RD1_1785 1713028 - 1714158 + | hypothetical protein TERM 1406 1714543 - 1714555 + G 74 -3.3 -4.72986 | opp_overlap 1714544, overlap 1714544 GGCCTTTGCGTTCAA ACCGT CCA ACGGG TTTTTGCTGCGGCTG RD1_1786 1714229 - 1714720 + | hypothetical protein TERM 1407 1714805 - 1714790 - f 76 -3.2 -5.02476 | ACACTGCCTAAAAAA CTGGCA ATTC CACCAG TGCGGGCATAGGGTC TERM 1408 1715538 - 1715524 - g 75 -8.5 -4.26871 | GAAGGGATGAAGAAA GCCGG GCTGA CCGGC TCACTGGATGGCAAG gill 1714876 - 1716309 + | glutamate dehydrogenase TERM 1409 1716540 - 1716529 - f 75 -5.8 -4.57341 | opp_overlap 1716528 1716530, overlap 1716530 AAGCGGCCTCAAAAA GCGA CATA TCGC GTCGTCTTTTGGCTG TERM 1410 1716741 - 1716767 + G 74 -5.7 -4.52589 | overlap 1716742 GCGATCATTATCGGC GGCGGCGGGCA TGGGC TGTCCACCGCG TTTTATCTGGCCAAG TERM 1411 1717281 - 1717265 - g 79 -9.3 -4.24204 | opp_overlap 1717272, overlap 1717266 CATCGACATTGAAAA CGGCGCG GTG CGCGGCG TGCAAACATCGCGCG TERM 1412 1717333 - 1717317 - g 81 -4.3 -5.00884 | overlap 1717319 ATCCGCGCCAAAAAA GTCGCCA TCG TGACGGC CGGGCGGTCCGGTCA TERM 1413 1717475 - 1717497 + G 95 -11.2 -4.60487 | opp_overlap 1717474, overlap 1717472 GCATTTCTATATCAG CCAGTCCGAC AAG GGCGGGCTGG TTTTTGGCGGTGATC soxB 1716627 - 1717880 + | sarcosine oxidase, beta subunit soxD 1717921 - 1718190 + | sarcosine oxidase, delta subunit soxA 1718187 - 1721114 + | sarcosine oxidase, alpha subunit soxG 1721107 - 1721652 + | sarcosine oxidase, gamma subunit, putative RD1_1792 1721685 - 1721987 + | hypothetical protein TERM 1414 1722190 - 1722202 + G 71 -6.9 -4.25104 | opp_overlap 1722173 GCAAGGGCGACATGT GGGCG CCG TGCCC TTTTCATCAGGAAAA TERM 1415 1722339 - 1722317 - g 71 -6.2 -4.35524 | overlap 1722310 GTGCGAAACCGAAAA TGTCGGCTTC ATG GAAGCGGTCA GAATTCTTGCGCAGG TERM 1416 1722778 - 1722791 + G 71 -8.1 -4.00042 | CCAAATATCTGAATT CTCCG GAAA CGGAG TTGTTTGATAAAGGC dnaG 1722072 - 1724027 + | DNA primase TERM 1417 1724603 - 1724619 + G 80 -10.9 -3.71649 | opp_overlap 1724598 1724596 AATACAATGATTTCA GGGCTTT GCG AAAGCCC TTTGACCTTTCAGGC rpoD 1724150 - 1726135 + | RNA polymerase sigma factor RpoD RD1_1795 1726859 - 1727143 + | hypothetical protein RD1_1796 1727218 - 1727634 + | hypothetical protein RD1_1797 1727668 - 1728090 + | hypothetical protein RD1_1798 1728225 - 1728692 + | transcriptional regulator NrdR TERM 1418 1728719 - 1728742 + G 76 -10.2 -3.83409 | overlap 1728709 CGCTACATGGCGCTG GCCCTGTCGT TGGG GCGGCGGGGC TTTGGTCGTGTATGG TERM 1419 1729085 - 1729102 + G 75 -2.5 -5.0133 | opp_overlap 1729096, overlap 1729081 1729087 TTGGAAGCGCAGGCG CGCCGGG ACAA CGCGGGG TTTTTTGCGCGCGTG ribD 1728689 - 1729786 + | riboflavin biosynthesis protein ribD ribE 1729930 - 1730523 + | riboflavin synthase subunit alpha ribB 1730594 - 1731718 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase ribH 1731722 - 1732273 + | riboflavin synthase, beta subunit TERM 1420 1732585 - 1732605 + G 76 -13.3 -3.05384 | ACGCTGCGTGCCCTG TTTCGCGCC GCT GGCGCGGAA TTGAATGGCAAGGAC nusB 1732315 - 1732752 + | N utilization substance protein B-like protein, putative RD1_1805 1732756 - 1733061 + | hypothetical protein TERM 1421 1733065 - 1733051 - f 70 -9.2 -3.76492 | opp_overlap 1733050 CTGAACTGGATGAAA CCGGCC GCT AGCCGG GTCGTTTGTGGCAAA RD1_1806 1733186 - 1733299 + | hypothetical protein RD1_1807 1733591 - 1734049 + | hypothetical protein RD1_1808 1734246 - 1734061 - | hypothetical protein RD1_1809 1734326 - 1734808 + | acetyltransferase, putative RD1_1811 1735025 - 1736038 + | AraC family transcriptional regulator RD1_1812 1736357 - 1736049 - | hypothetical protein rluD 1736356 - 1737384 + | ribosomal large subunit pseudouridine synthase D TERM 1422 1737419 - 1737393 - fH 79 -7.3 -4.44797 | gap 1, opp_overlap 1737397 1737398, overlap 1737399 TCAGTAACATGAAAA GCAAA-CCCGCG TGAA CGCGGCCTTTGC CAAGTGTTAACGGGC rpoH 1737568 - 1738464 + | RNA polymerase factor sigma-32 TERM 1423 1738552 - 1738597 + T 83 -11.7 -3.62032 | opp_overlap 1738554 1738559, overlap 1738554 1738559 GGGTCAGACGCCGCA AACAAAACCGCCCGGCCCCTG ATCG CAAGGGCCGGGCGATCCTGTC TTTGCGGATTACTCT TERM 1424 1738554 - 1738595 + T 95 -14.3 -3.38581 | opp_overlap 1738554 1738559, overlap 1738552 1738559 GTCAGACGCCGCAAA CAAAACCGCCCGGCCCCTG ATCG CAAGGGCCGGGCGATCCTG TCTTTGCGGATTACT TERM 1425 1738595 - 1738554 - T 100 -23.1 -3.56643 | opp_overlap 1738554 1738552 1738559, overlap 1738559 GTCAGACGCCGCAAA CAAAACCGCCCGGCCCCTG ATCG CAAGGGCCGGGCGATCCTG TCTTTGCGGATTACT TERM 1426 1738590 - 1738559 - T 100 -21.6 -4.87133 | opp_overlap 1738559 1738554 1738552, overlap 1738554 ACGCCGCAAACAAAA CCGCCCGGCCCCTG ATCG CAAGGGCCGGGCGA TCCTGTCTTTGCGGA TERM 1427 1738559 - 1738590 + T 91 -17.2 -2.80821 | opp_overlap 1738554 1738559, overlap 1738554 1738552 ACGCCGCAAACAAAA CCGCCCGGCCCCTG ATCG CAAGGGCCGGGCGA TCCTGTCTTTGCGGA pepF 1740426 - 1738606 - | oligoendopeptidase F, putative TERM 1428 1739164 - 1739140 - G 70 -9.9 -3.54741 | GAGCATTTCGCCAAA CACGCTGGCCG TCT CCGCCAGTGTG AGCGGTGTGGACGAC TERM 1429 1739665 - 1739679 + g 81 -4.2 -4.87291 | overlap 1739664 1739667 TTCCATGCCGCGCCA GCGATC CGC GATCTC TTTTTCCTTGGCCTG TERM 1430 1739685 - 1739717 + g 84 -10.5 -4.19238 | CCGCGATCTCTTTTT CCTTGGCCTGAGTGT TGT GCACGCGGGCAAAGG TTTTGACGTTCGCGC TERM 1431 1740168 - 1740188 + g 84 -3.1 -5.26875 | opp_overlap 1740168, overlap 1740171 1740173 CGGCATAGGACATGA TCCGCCCGG CGA TCTGGCTGA TTTTTTCGTTGCGCA TERM 1432 1740595 - 1740585 - H 71 -4.6 -4.64861 | opp_overlap 1740588 TTCGGGGAAAACAAA CGAC AGG GCCG TTCCGGTATCTGTTG RD1_1816 1740635 - 1741528 + | hypothetical protein TERM 1433 1741589 - 1741613 + T 70 -9.4 -3.72893 | opp_overlap 1741544 AGGATTTCAATGCGT TACGTGGTAC TGGGT GTACCATGTA TTTCGTCAGAGGCTC dnlI 1743233 - 1741635 - | ATP-dependent DNA ligase TERM 1434 1742305 - 1742319 + g 70 -4.2 -4.57341 | overlap 1742294 1742304 TGCAGCACGACAGGT GCTTCT GCG AGCAGC TTTTTGGGCACCGTT TERM 1435 1742397 - 1742368 - G 73 -9.9 -3.65902 | TGCAGCGCATTGAAA CTGGACGGCGCGT CGGC ACCCGCCTCCCAG ACCAGCAATTCGCCA RD1_1818 1744243 - 1743230 - | hypothetical protein TERM 1436 1743443 - 1743422 - G 71 -7.9 -4.01888 | overlap 1743423 ATCCGAGATGACAAA CCCCCGATC GCCG GACCGGCGG CGGCGCACGCCGCGC TERM 1437 1743996 - 1744008 + g 71 -9.1 -3.73775 | opp_overlap 1743994 GGATGAAAGGATACC TCGGC CGC GCCGA TTTGCTGCACCTCCC pldB 1745160 - 1744282 - | lysophospholipase, putative TERM 1438 1744899 - 1744867 - G 81 -8.2 -4.614 | CGCAAGCAGATAAAA CGGTCGGGGCAGGC CCAAC GCGCGCGCCGCCCG CATCATGGCCGCGAC TERM 1439 1745002 - 1745055 + g 73 -4.3 -4.7173 | gap 1, overlap 1745004 CTGACCCCGCCAGTC CACGGCGGTGCTCGCCAGACCGCGCG CGC CGAGCGCCTTGGCGATC-TGGCCGTA TTTTTCAATGTACTC RD1_1820 1745519 - 1745229 - | hypothetical protein RD1_1821 1745561 - 1746151 + | TPR domain-containing protein TERM 1440 1746218 - 1746192 - g 71 -5.8 -4.41548 | gap 1, overlap 1746193 TGACAGGTGACAAAA GGGTCGTGGCC GTTTTA GGCC-CGACCA ACACAGGCAAAACAA TERM 1441 1747769 - 1747749 - g 74 -6.7 -4.35461 | CCAAGACGATTAAAA CGGCGGCCT TGC AGGCCCTCG CCCCGCAGTTCCACC TERM 1442 1748996 - 1748955 - g 78 -2.1 -5.08255 | overlap 1748968 AGCCCGAAAAGAAAA TCGACCCCGACAACCCG TTTGCGGC CGCGCTGATGGGGTTGA AGGACGGCAAGTAAG RD1_1822 1746176 - 1749010 + | helicase, putative TERM 1443 1749322 - 1749307 - g 78 -6.8 -4.64657 | overlap 1749308 CGAAACGCCGAAAAA CCCCTC ATTT GAGGGA AAAGGTCGTCCCACA hslR 1749011 - 1749388 + | heat shock protein, putative fdxA 1749442 - 1749780 + | ferredoxin II RD1_1825 1750054 - 1750566 + | CarD family transcriptional regulator TERM 1444 1750611 - 1750592 - T 91 -12.1 -4.09685 | opp_overlap 1750592 GGCTACTGTTGAAAA CCGCGCC CGTGCC GGCGCGG TTTTTTCATGGGGTG TERM 1445 1750592 - 1750611 + T 100 -12.1 -5.15634 | opp_overlap 1750592 GGCTACTGTTGAAAA CCGCGCC CGTGCC GGCGCGG TTTTTTCATGGGGTG cobS 1751366 - 1750617 - | cobalamin 5'-phosphate synthase cobU 1751460 - 1752473 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase TERM 1446 1752461 - 1752500 + T 100 -13.6 -5.01732 | overlap 1752463 TGCCGAAGCAGGCGT TGCCGACGGATGAGCC GGGCTGAG GGCTCAACCGTCGGTG TTTTTTGCGGAGATT TERM 1447 1752463 - 1752498 + T 100 -16.2 -4.13561 | overlap 1752461 CCGAAGCAGGCGTTG CCGACGGATGAGCC GGGCTGAG GGCTCAACCGTCGG TGTTTTTTGCGGAGA kefC 1754371 - 1752488 - | glutathione-regulated potassium-efflux system protein TERM 1448 1753455 - 1753432 - G 76 -6.7 -4.56597 | gap 1, overlap 1753435 GCGTGTTGTCAAAAA GCAGCGGGAA GTTGA TCCCCGC-GC CAACCGTGATGAAAA RD1_1829 1754849 - 1754394 - | AsnC family transcriptional regulator TERM 1449 1755373 - 1755401 + G 71 -8.2 -4.02581 | gap 1 AGGTGCTGGATGTGC CAGCGA-TCATCG GGAT CGGTGGGTCGCTG TTGTATTTTGTCGAC TERM 1450 1755971 - 1755983 + G 81 -7.7 -4.68506 | CTTTTCCAAAACCGT GATCG GCC CGATC TTTTTCGAGTTCATT hppD 1755006 - 1756100 + | 4-hydroxyphenylpyruvate dioxygenase RD1_1832 1758378 - 1756111 - | hypothetical protein RD1_1831 1756295 - 1756684 + | hypothetical protein TERM 1451 1757638 - 1757611 - Gf 77 -11.2 -3.53012 | GGGGGGCTCGGCAAA CCCGGGCGAAAC ACTG GCCTCGCCCTGG ACAAACCCCGCCGTG TERM 1452 1758755 - 1758737 - g 71 -8.8 -3.71378 | CACGCGACATGCAAA CGCAGGGT GTC AACCTGCG CCCCGTCTGGAACCG RD1_1833 1758487 - 1759185 + | hypothetical protein TERM 1453 1759221 - 1759195 - T 100 -12.3 -4.91109 | opp_overlap 1759199, overlap 1759199 GGTTGAGGATAAAAA GAAAGGGCCGC GCGCG GCCGCCCTTTC CCGGCAAATTCATGC TERM 1454 1759217 - 1759199 - T 91 -7.3 -4.98911 | opp_overlap 1759199, overlap 1759195 GAGGATAAAAAGAAA GGGCCGC GCGCG GCCGCCC TTTCCCGGCAAATTC metB 1760538 - 1759240 - | O-acetylhomoserine sulfhydrylase, TERM 1455 1759563 - 1759596 + g 76 -6.8 -4.57341 | gap 3 AGGGCGATGACGGCA GGCCCGCGTAGGTC-AC GTA GTCGACC--CGCGGGTC TTTTTCCAGCCACTT RD1_1835 1760923 - 1762056 + | aminotransferase, putative RD1_1837 1762983 - 1762093 - | LysR family transcriptional regulator RD1_1838 1763174 - 1764187 + | D-cysteine desulfhydrase RD1_1839 1764222 - 1765181 + | glycine betaine/L-proline ABC transporter, substrate binding protein, putative TERM 1456 1765231 - 1765200 - T 100 -14.5 -3.93288 | opp_overlap 1765205, overlap 1765202 GCGGAGTGAATCAAA CATGATCGGCGCG CGTGAT CGCGCCGATCATT CAAACAGCGGGTGGG TERM 1457 1765229 - 1765202 - T 100 -17.1 -3.55604 | opp_overlap 1765205, overlap 1765200 GGAGTGAATCAAACA TGATCGGCGCG CGTGAT CGCGCCGATCA TTCAAACAGCGGGTG TERM 1458 1765205 - 1765226 + T 76 -13 -2.70932 | opp_overlap 1765202 1765200 GTGAATCAAACATGA TCGGCGCG CGTGAT CGCGCCGA TCATTCAAACAGCGG RD1_1840 1765887 - 1765231 - | hypothetical protein TERM 1459 1766930 - 1766944 + G 77 -7.8 -4.29738 | overlap 1766936 TGCCGATATCGCATA TCGTGC TCA GCGCGA TTTTCATGGCTCTGA RD1_1841 1766308 - 1767849 + | glycine betaine/L-proline transport system permease, putative RD1_1842 1767846 - 1768589 + | hydrolase, putative RD1_1843 1768711 - 1768929 + | hypothetical protein TERM 1460 1769101 - 1769079 - T 71 -11.4 -2.9326 | opp_overlap 1769078 1769077, overlap 1769078 1769090 AGAATTATACGAAAG GTTTGGAATG ACG CATCCCAAAC GGTGTTTTGTACGCA RD1_1845 1769599 - 1769207 - | hypothetical protein RD1_1848 1772070 - 1770838 - | site-specific DNA recombinase, putative RD1_1849 1772351 - 1772055 - | hypothetical protein TERM 1461 1772367 - 1772377 + H 74 -4.6 -4.68846 | GGTGTTGTCCTTTCT GCCG CTG TGGC TTTTGCTTTGTTGAT TERM 1462 1772642 - 1772632 - g 74 -3.2 -4.7373 | TGACCTGACGAAAAA CCTC TTT AAGG CAGTCAGCGGTGTTG RD1_1850 1772561 - 1773316 + | hypothetical protein RD1_1851 1774220 - 1774486 + | hypothetical protein RD1_1852 1774522 - 1775334 + | integrase catalytic subunit TERM 1463 1776423 - 1776447 + F 86 -10.7 -4.08144 | overlap 1776415 GGTGACTATGTCGGG GCCGACAGTTC ACT GGACTGTCGCC TTTCTCGTTCCTCAG RD1_1854 1776600 - 1776698 + | hypothetical protein RD1_1855 1777259 - 1776726 - | rrf2 family transcriptional regulator RD1_1856 1777253 - 1778464 + | cobalamin synthesis protein, putative RD1_1857 1778497 - 1779096 + | hypothetical protein RD1_1858 1779093 - 1779359 + | hypothetical protein RD1_1859 1779379 - 1780902 + | dipeptide ABC transporter, substrate-binding protein, putative TERM 1464 1780942 - 1780915 - T 87 -13.4 -3.21695 | gap 1, overlap 1780910 TGACGATTAATGCAA CGGGCCTGAGCGC TGA GCGCTCGGGCC-G CACGATCCTGCATCC TERM 1465 1780976 - 1780995 + T 86 -12.8 -3.62597 | GCATCTGCGGATGGC GCCCGGCG ACCG CGTCGGGC TTGTTGGCGCGTCGG RD1_1860 1781362 - 1781132 - | hypothetical protein RD1_1861 1781576 - 1782301 + | ABC transporter, ATP-binding protein, putative RD1_1862 1782298 - 1783236 + | oligopeptide ABC transporter, permease protein nikC 1783229 - 1784023 + | nickel transport system permease protein nikC RD1_1864 1784020 - 1784913 + | integral membrane protein, putative RD1_1865 1786575 - 1785070 - | integral membrane protein, putative TERM 1466 1785631 - 1785668 + g 70 -10.5 -3.53444 | gap 1, opp_overlap 1785640 1785641, overlap 1785642 GCCCAGTGTCAGCAT CGGCACAAAGGCCCCGCC CAC GGCGGCGTTATTG-GCCG TTTCAGGCGCGATCA RD1_1866 1787048 - 1786572 - | hypothetical protein TERM 1467 1786686 - 1786658 - G 71 -8.7 -3.74224 | CCGAAAGCAGTGAAA GCACCAGCGCCCA GAC CGGGCCCTTGCGC CAAAGGGCCCAAATC TERM 1468 1786877 - 1786930 + g 73 -10.1 -3.61398 | gap 1, opp_overlap 1786881, overlap 1786878 CGTCCTTTAGAATGA ACAACGCCGTCACGCCCAT-CACGCC AGA GGCGAGCATGGGCATGACGCCGCCGG TTGTTAGCCCGGCAA TERM 1469 1786878 - 1786929 + g 73 -13.6 -2.76696 | gap 1, opp_overlap 1786881, overlap 1786877 GTCCTTTAGAATGAA CAACGCCGTCACGCCCAT-CACGCC AGA GGCGAGCATGGGCATGACGCCGCCG GTTGTTAGCCCGGCA TERM 1470 1786926 - 1786881 - G 100 -20.5 -3.8591 | gap 1, opp_overlap 1786878 1786877 CTTTAGAATGAACAA CGCCGTCACGCCCAT-CACGCC AGA GGCGAGCATGGGCATGACGCCG CCGGTTGTTAGCCCG TERM 1471 1787059 - 1787093 + r 100 -20.8 -3.05384 | TTCATGTGTTTTCCG CTGGTCGACCCGCC GTTCCCA GGCGGGTCGACCGG TTGGATCAGGGGCGC RD1_1867 1788088 - 1787099 - | exported protein, putative TERM 1472 1787849 - 1787861 + g 70 -10.5 -3.53224 | GAACGTGTAGCCATC CGCCG GTG CGGCG TTTACGAAAGCGGTG TERM 1473 1788063 - 1788052 - G 78 -7.2 -4.59773 | overlap 1788054 CCGGACTGGCAAAAA CGGC AAGT GCCG CAGCGGCAACCTTCA TERM 1474 1788360 - 1788349 - H 77 -3.6 -5.12707 | overlap 1788339 TCAAACCGGAAAAAA GCCG GAGA CGAC ATCTGAGTTGACCTG RD1_1868 1788422 - 1789981 + | 4-coumarate mucS 1790282 - 1790794 + | MarR family transcriptional regulator RD1_1870 1791514 - 1790798 - | von Willebrand factor type A domain-containing protein RD1_1871 1792230 - 1791517 - | von Willebrand factor type A domain-containing protein TERM 1475 1792094 - 1792049 - G 81 -4.8 -5.00616 | gap 4, opp_overlap 1792072 1792075, overlap 1792086 TCCGTCGCGAAAAAA GCGGCTTGGACCTCGGGTGCCG TCAGCG CGGCAAC-GAGG-CC--GCCGC GTTGCAGCCTGTCTT TERM 1476 1792192 - 1792166 - G 79 -12.3 -3.42621 | overlap 1792167 AACGCCAAGCGACAA TTCTGCGCCAG AGCGG CTGGCGCAGAG AACAGCATGAGCGCG TERM 1477 1792191 - 1792167 - G 78 -15.8 -2.65091 | overlap 1792166 ACGCCAAGCGACAAT TCTGCGCCAG AGCGG CTGGCGCAGA GAACAGCATGAGCGC gloA 1792652 - 1792224 - | lactoylglutathione lyase RD1_1873 1792759 - 1792899 + | hypothetical protein TERM 1478 1793188 - 1793178 - g 72 -2.4 -4.77036 | GGTGACGACGAAAAA GCTG CAC CTGC GCTCGATCTTTCATG thyA 1793032 - 1793865 + | thymidylate synthase folA 1793869 - 1794348 + | dihydrofolate reductase y4cH 1794668 - 1794462 - | cold shock family protein-related protein, putative RD1_1877 1794862 - 1795179 + | ArsC family protein RD1_1878 1795740 - 1795186 - | DoxX subfamily protein, putative TERM 1479 1795577 - 1795560 - G 76 -6.9 -4.57569 | overlap 1795572 TCATCCTTGGAAAAA TCTGCGC ATAA GCGCCGA CGGACGGTTGAAACA RD1_1879 1796495 - 1795737 - | hypothetical protein TERM 1480 1795953 - 1795970 + g 70 -10.5 -3.53224 | overlap 1795954 1795957 TGTTATGATCACGTC CTGCGCG ATGG CGCGCGG TTTGGCAGCGCCCTC TERM 1481 1796434 - 1796394 - G 79 -9.6 -4.2349 | gap 1, overlap 1796431 GCGGTAGACGGAAAA CCGG-TTGCCGGCGGGTGC CCCT GCGCCATCCGACAATCCGG GCGGCACCGCTGCCT RD1_1880 1797346 - 1796492 - | hypothetical protein TERM 1482 1797416 - 1797390 - R 83 -10.1 -4.15006 | AGAGGTATCTGAAAA GCACCCGACAC AGAAA ATGCCGGGCGC ACGTGTTTTCTTTAT RD1_1881 1797730 - 1797428 - | hypothetical protein TERM 1483 1797907 - 1797861 - g 74 -6.7 -4.386 | opp_overlap 1797870 1797872, overlap 1797863 1797870 1797872 CAAGGGGCGAGAAAA CACGCAAAACGCCGCAGA-ATTG TTT CAATATCTGCGGTGTATTCCG-G TTCAGGGCTGAAAAC TERM 1484 1797906 - 1797863 - g 76 -10.4 -3.79687 | gap 1, opp_overlap 1797870 1797872, overlap 1797861 1797870 1797872 AGGGGCGAGAAAACA CGCAAAACGCCGCAGA-ATTG TTT CAATATCTGCGGTGTATTCCG GTTCAGGGCTGAAAA TERM 1485 1797899 - 1797870 - g 87 -10.1 -4.36485 | gap 1, opp_overlap 1797870 1797872, overlap 1797863 1797861 1797872 AGAAAACACGCAAAA CGCCGCAGA-ATTG TTT CAATATCTGCGGTG TATTCCGGTTCAGGG TERM 1486 1797870 - 1797899 + G 72 -12.3 -3.09492 | gap 1, opp_overlap 1797870 1797863 1797861 1797872, overlap 1797872 AGAAAACACGCAAAA CGCCGCAGA-ATTG TTT CAATATCTGCGGTG TATTCCGGTTCAGGG RD1_1882 1797817 - 1797918 + | hypothetical protein TERM 1487 1797966 - 1797942 - T 74 -6.9 -4.3739 | opp_overlap 1797956, overlap 1797944 TATTTTGTTACAAAA GGTCGGGTGGC GTT GCCTCGCGTCC CAAGGCTTGTGTTAC thrS 1799880 - 1797934 - | threonyl-tRNA synthetase TERM 1488 1797980 - 1798004 + g 71 -8.5 -4.11141 | overlap 1797981 1797983 1797985 CCCAAGGCTTGTGTT ACAGCGTCCAG TGT CTCGACGCTGG TCTTTTTCTCTCCGA TERM 1489 1797985 - 1798006 + g 88 -6.5 -4.96848 | overlap 1797983 1797981 1797980 GGCTTGTGTTACAGC GTCCAGTGT CTCG ACGCTGGTC TTTTTCTCTCCGAGC TERM 1490 1799488 - 1799503 + g 77 -3.3 -4.87665 | AGGGTCGCGTTTGTT GATGA TCTCCT TCATC TTTTTCTCGATCAGA TERM 1491 1799761 - 1799773 + g 74 -6.2 -4.56597 | opp_overlap 1799745 1799744 CGCACCGCCGACGGT GGCG CTGAT CGCC TTTTTGCGCAGGGAG RD1_1884 1800079 - 1800324 + | hypothetical protein RD1_1885 1800579 - 1801334 + | hypothetical protein TERM 1492 1801870 - 1801892 + G 76 -12.6 -3.40299 | opp_overlap 1801864 GCCCAATTACCTTGC CCCCGGCCCG GCA CGGGTCGAGG TTCTGGATCTGGTCA RD1_1886 1801487 - 1802200 + | hydrolase, putative TERM 1493 1802201 - 1802223 + T 70 -6.9 -4.08557 | gap 1 TACGTCGTGACCTGA CACGG-GGCC GTCA GGCCGCCGCG TTCTTGTTTGCAGCC phaZ 1803497 - 1802211 - | polyhydroxyalkanoate depolymerase, intracellular, putative TERM 1494 1805322 - 1805310 - g 73 -4.8 -4.59853 | CGAATGGCTGAAAAA GCGA TCAGG TCGC AAGGTCAAGGCGCGC phaC 1803607 - 1805412 + | poly(3-hydroxyalkanoate) polymerase, putative TERM 1495 1805462 - 1805425 - f 80 -9.9 -3.93369 | opp_overlap 1805427, overlap 1805406 TGAATTTTAATGAAA TTCTGCGCTGCGGCA TTTATTTG TGCTGCAGTGCAGAA AAAAGCTTGCAATGC TERM 1496 1805530 - 1805516 - f 72 -11.4 -3.12142 | overlap 1805514 1805512 CTCAGACGCAACAGA CCGGGA TCA TCCCGG AAGGCGACGAAAGGA RD1_1889 1805553 - 1805999 + | hypothetical protein TERM 1497 1806050 - 1806073 + G 100 -16.8 -4.85782 | opp_overlap 1806046 AGGCGCAATGATGTC GGGCGAGCTT GTGA AAGCTCGCCC TTTCTTTTTGCGCGC TERM 1498 1806554 - 1806539 - g 79 -9 -4.26076 | opp_overlap 1806527, overlap 1806551 GGAGGCCCAGCAAAA GGCCTT TATG AAGGCC ATGACTGGCGGTCTG RD1_1890 1806045 - 1806701 + | polyhydroxyalkanoate synthesis repressor TERM 1499 1806713 - 1806701 - T 73 -10.5 -3.43919 | overlap 1806699 GTCAAAGCTGAAATA GCCCG TAG CGGGC GCATCTGTCGAAGTA RD1_1891 1808117 - 1806813 - | oxidoreductase, FAD-binding, putative TERM 1500 1806888 - 1806867 - G 76 -10.1 -3.75024 | gap 1 CGCGAGGATCAACAA CGGCGTGCGC AAG GCAC-CGCCG CCCGGAAAGGCCGGT RD1_1892 1809494 - 1808136 - | glutamine synthetase, putative RD1_1893 1810171 - 1809479 - | glutamine amidotransferase, class I RD1_1894 1811509 - 1810175 - | glutamine synthetase, putative TERM 1501 1810501 - 1810541 + g 71 -7.3 -4.25104 | opp_overlap 1810522 GTTCGATGCGCCGCG CCGCGGGGCTGCCTGACGG AAT CCGTATGGCGGATGTGCGG TTTTCATAGGCCCAA TERM 1502 1811242 - 1811230 - G 80 -10.5 -4.13014 | TCCAGATCGGCAAAA GCGCC GAG GGCGC ATCGAGCCACGGCAT hisM 1812343 - 1811597 - | histidine ABC transporter, permease protein RD1_1897 1813236 - 1812400 - | arginine/histidine-ABC transporter, permease protein TERM 1503 1813080 - 1813036 - G 78 -2.8 -5.02231 | GAAAAACAGGAAAAA GGCGATATCCGGCAC-GCCGCG CAC CACGGCAATGTAGGATTT-GCC AAACCACCGCAGGGG TERM 1504 1813333 - 1813308 - R 100 -15.4 -4.86731 | opp_overlap 1813308 TCGCTTGAAAGAAAA CCGGCGCACG ATGAGG CGCGCGCCGG TTTGAGTGAATCAGA TERM 1505 1813308 - 1813333 + r 89 -13.2 -3.6682 | opp_overlap 1813308 TCGCTTGAAAGAAAA CCGGCGCACG ATGAGG CGCGCGCCGG TTTGAGTGAATCAGA RD1_1898 1814072 - 1813344 - | periplasmic binding protein, putative TERM 1506 1813979 - 1813996 + g 71 -8.4 -4.13945 | opp_overlap 1813962 GAGGGTAGGCGCCTT CCGTGC CGAGGC GCACGG TTTTGCCGTGACCAT RD1_1899 1814876 - 1814100 - | amino acid ABC transporter, ATP-binding protein TERM 1507 1814378 - 1814400 + g 74 -12.7 -3.13403 | gap 1, overlap 1814376 CCGGCTCCATGCAGA GCGCGC-GCG CAAT CGCTGCGCGC TGTTGCTGACCGCCA RD1_1900 1815743 - 1814988 - | hypothetical protein RD1_1901 1816180 - 1815740 - | hypothetical protein TERM 1508 1816146 - 1816158 + g 71 -7.7 -4.08767 | overlap 1816144 AAGTCTTCGGCGTCA GACTG GGT CAGTC TTTTCAGGAAATCAG RD1_1902 1816668 - 1816219 - | hypothetical protein RD1_1903 1816716 - 1816826 + | hypothetical protein RD1_1904 1817660 - 1816869 - | hypothetical protein TERM 1509 1817738 - 1817766 + r 73 -8.7 -3.86897 | opp_overlap 1817740, overlap 1817739 GCCAAGACATGAAAA AAGCGCCCCGATG AAA CATCGGAGCGCCC TTTGTAAGACCTAAA TERM 1510 1817739 - 1817765 + r 75 -12.2 -2.91924 | opp_overlap 1817740, overlap 1817738 CCAAGACATGAAAAA AGCGCCCCGATG AAA CATCGGAGCGCC CTTTGTAAGACCTAA TERM 1511 1817764 - 1817740 - R 100 -17.9 -5.27399 | opp_overlap 1817739 1817738 CAAGACATGAAAAAA GCGCCCCGATG AAA CATCGGAGCGC CCTTTGTAAGACCTA RD1_1905 1818547 - 1817789 - | hypothetical protein TERM 1512 1818526 - 1818514 - G 76 -9.1 -4.08485 | CCGATCCAAATGAAA GCAGC GCC GCTGC TGCAACTGTCGTTCT pyrG 1820395 - 1818752 - | CTP synthetase secG 1820938 - 1820573 - | preprotein translocase subunit SecG nthA 1821202 - 1821834 + | nitrile hydratase, alpha subunit TERM 1513 1822274 - 1822329 + GF 85 -16 -2.64472 | gap 1, overlap 1822309 1822325 GGCGAACTGCCTTGT CGATGGCGGCCACACGCGCTTGCCGCG CTA CGCGGCGGGGATGCGGGGCCGC-ATCG TCCGTTTCCACGGTA nthB 1821831 - 1822505 + | nitrile hydratase, beta subunit TERM 1514 1822598 - 1822578 - gT 76 -9.7 -3.90112 | opp_overlap 1822588 TGCGGTTGAATGAAA CGGGCCA TTTGCCT TGGCCCG AGTGGGCGGCGGCCT RD1_1910 1822475 - 1822816 + | hypothetical protein TERM 1515 1822821 - 1822834 + T 81 -8.1 -4.28994 | TGGCGGATTGATTGC CTGCC TGAT GGCAG TTTTGATCAATCCTC RD1_1911 1823203 - 1822841 - | hypothetical protein TERM 1516 1824077 - 1824091 + G 71 -7 -4.23758 | GTATTCTGTTTGAGG GCGCAC AGG GCGCGC TTTTGGATATCGACT purA 1823341 - 1824705 + | adenylosuccinate synthetase RD1_1913 1824717 - 1824941 + | hypothetical protein TERM 1517 1824932 - 1824952 + T 79 -11.1 -3.65827 | opp_overlap 1824903 1824930 1824932 1824936 TGATCCGGACCAACA CGAAGGCTG AAA CAGCCCTCG TTTCGCTCAGCCTTG TERM 1518 1824952 - 1824932 - T 84 -13.3 -3.14051 | opp_overlap 1824932, overlap 1824903 1824930 1824936 TGATCCGGACCAACA CGAAGGCTG AAA CAGCCCTCG TTTCGCTCAGCCTTG RD1_1914 1826602 - 1824959 - | putative lipoprotein TERM 1519 1825966 - 1825998 + g 71 -6.2 -4.36914 | gap 1, opp_overlap 1825959, overlap 1825969 1825977 1825990 CAACAATACTGCTGG CATCGCCTGCTGCGC GGCT GCGCAGCGCTCG-TG TTTTGTCACCAGCCC TERM 1520 1825969 - 1825996 + g 71 -9 -3.79419 | opp_overlap 1825959, overlap 1825966 1825977 1825990 CAATACTGCTGGCAT CGCCTGCTGCGC GGCT GCGCAGCGCTCG TGTTTTGTCACCAGC TERM 1521 1826030 - 1826046 + g 83 -2.9 -5.24129 | TTCTTGGTGGCAAGG CTCATCC TGT GCATGGG TTTTTTGTCGCGCCA TERM 1522 1826067 - 1826080 + g 84 -3.7 -5.24129 | overlap 1826056 TGTCGCGCCACCGCC GCGCG CAGA CGCTC TTTTTTCTCCGCAAG TERM 1523 1826294 - 1826346 + g 73 -9 -3.86283 | gap 1, overlap 1826295 GCTGTCCAAGGCCGT TTGCGCATGGCGCGCCGCCGCGTGC TCAG GCGT-TGGCGCGGCGCCATGCACGG TTTGATGTGCATTAA TERM 1524 1826934 - 1826962 + Gr 71 -8.8 -3.76492 | ACTCAATCTCGGCCT CCGC-GCGCGCGCG CAT CGCGC-CACAGCGG TTTCATCACATTGCG RD1_1916 1828286 - 1827351 - | hypothetical protein thiN 1826741 - 1827451 + | thiamine pyrophosphokinase, putative TERM 1525 1827930 - 1827944 + gT 71 -10 -3.53012 | GCGCGCGCCCACCTC TTCGCC GAG GGCGAA TTTACCCAGCACGAG sdaA 1829718 - 1828342 - | L-serine ammonia-lyase TERM 1526 1829428 - 1829440 + g 71 -5.5 -4.29493 | CGGGGGCAGGCCATC GACGT TCA GCGTC TTTGTCTCTTTGATC rpiA 1830290 - 1831078 + | ribose 5-phosphate isomerase A gor 1831174 - 1832628 + | glutathione reductase RD1_1920 1832702 - 1833865 + | HflK protein, putative TERM 1527 1834321 - 1834334 + G 71 -9.5 -3.72141 | opp_overlap 1834320 1834317 CGGATCACAACGCAG GCGCG TCAA CGCGC TTTGCCTCTGGGTCT hflC 1833865 - 1834764 + | HflC protein, putative RD1_1922 1834761 - 1834958 + | hypothetical protein TERM 1528 1835041 - 1835024 - f 71 -9.9 -3.58343 | opp_overlap 1835022 CTTATGATTTTGAAA CTGCATG GCTA CATGCAG ACTGGCTTAGAGCGC TERM 1529 1835330 - 1835354 + G 81 -4.2 -5.00616 | overlap 1835332 1835332 GGCCACAGGGGATTG TGCCCGAAGG CTCGC CCTTCGAGGA TTTTTTCCGCGACCG TERM 1530 1836471 - 1836444 - g 72 -2 -4.83169 | gap 1, overlap 1836452 1836453 1836455 AGCTGGCCAGAAAAA GGTGACAAGCATC GCG GAT-CTTGAAACC CGCGTTGAAGAAGCC degP 1835107 - 1836570 + | serine protease DO-like precursor, putative TERM 1531 1836614 - 1836594 - T 77 -8.2 -4.20883 | opp_overlap 1836595, overlap 1836595 GAAAAAGTGGTAAAA GGGGCGCT CTTGC AGCGCCCT TTTTTGTGCCGGGGA TERM 1532 1836613 - 1836595 - T 76 -11.7 -3.11445 | opp_overlap 1836595, overlap 1836594 AAAAAGTGGTAAAAG GGGCGCT CTTGC AGCGCCC TTTTTTGTGCCGGGG TERM 1533 1836595 - 1836613 + T 100 -11.7 -5.24129 | opp_overlap 1836595 1836594 AAAAAGTGGTAAAAG GGGCGCT CTTGC AGCGCCC TTTTTTGTGCCGGGG dnaE2 1837030 - 1836635 - | DNA polymerase III alpha subunit, putative TERM 1534 1836756 - 1836784 + g 100 -11.6 -4.76644 | opp_overlap 1836757, overlap 1836757 CCTGTAACGCGCAAC ATCCGCCCCGCG ATCAC CGCGCGGCGGAA TTTTTCATAGATATT TERM 1535 1836783 - 1836757 - G 83 -15.8 -3.06261 | opp_overlap 1836756 1836757 CTGTAACGCGCAACA TCCGCCCCGCGA TCA CCGCGCGGCGGA ATTTTTCATAGATAT TERM 1536 1836757 - 1836783 + g 90 -15.1 -3.44902 | opp_overlap 1836757, overlap 1836756 CTGTAACGCGCAACA TCCGCCCCGCG ATCAC CGCGCGGCGGA ATTTTTCATAGATAT fdx 1837155 - 1837478 + | ferredoxin VI TERM 1537 1837985 - 1837965 - g 73 -4.6 -4.58395 | CCCATCTGGCAAAAA CACTGCGC ATCTG GCGCTATG AAGACCGCCGGCTGA RD1_1926 1837478 - 1838224 + | FG-GAP repeat-containing protein purD 1839590 - 1838325 - | phosphoribosylamine--glycine ligase TERM 1538 1839382 - 1839326 - G 80 -10.3 -4.07568 | gap 4 GGCCGGGGCCGAAAA CCGAAATGCCCGCATC-CCGCAGGCGATC CGC GA-CACCCGCGGCGA-G-GGGCGCTTCGG GCCCGACGATCACCA xseA 1839670 - 1841211 + | exodeoxyribonuclease VII, large subunit, putative RD1_1930 1841734 - 1841318 - | hypothetical protein TERM 1539 1842088 - 1842103 + G 77 -3.9 -4.93877 | ACCTGCTACCTGTGC GGCCC ACCCTC GGGTC TTTTGTTTCCTGCCA RD1_1931 1841946 - 1842149 + | hypothetical protein TERM 1540 1842896 - 1842910 + G 70 -10 -3.51411 | opp_overlap 1842888 1842898, overlap 1842892 GATGACATGCTGGAA CAGCTC GAA GAGCTG TTGATTTCGGCCGAT ftsY 1842164 - 1843702 + | signal recognition particle-docking protein FtsY TERM 1541 1844090 - 1844106 + G 81 -5.8 -4.82667 | gap 1 TGTCTACCCGGTTGT GCGCGGC ACCG GCC-CGC TTTTTGCTGTCATCG RD1_1933 1843773 - 1844681 + | integral membrane protein, putative ispZ 1844691 - 1845305 + | intracellular septation protein, putative RD1_1935 1845997 - 1845302 - | cyclic nucleotide-binding domain-containing protein gst 1846841 - 1846137 - | glutathione S-transferase, putative RD1_1938 1847817 - 1846825 - | hypothetical protein TERM 1542 1848025 - 1847992 - RH 70 -6.7 -4.09511 | gap 1, opp_overlap 1848010, overlap 1848010 AACACTCCGCTAAAA GGTCACT-CGATGAGG AAA CCCCGTCGCATTGACC GCGTATGGGGTTTTT TERM 1543 1848010 - 1848035 + rH 93 -4.7 -5.60993 | gap 1, opp_overlap 1847992 1848010 CACTCGATGAGGAAA CCCCGT-CGC ATTGACC GCGTATGGGG TTTTTTTGTGCCCAA TERM 1544 1848513 - 1848495 - gR 74 -9.6 -3.66178 | TTGCGCAATGGGAAA GTGCCATC CGG GATGACAC GCGCGCGGTTTTCTT RD1_1940 1849270 - 1849175 - | hypothetical protein metZ 1848071 - 1849252 + | O-succinylhomoserine sulfhydrylase TERM 1545 1849588 - 1849609 + G 71 -5.8 -4.41047 | GGAGTATCCGGCGCT GTCGCGTG AGTATC CAAGCGAC TTTTCCTTGGACGAT RD1_1941 1849379 - 1850518 + | putative GTP cyclohydrolase TERM 1546 1850954 - 1850968 + G 76 -7 -4.43501 | overlap 1850965 CCCTTTCGTGCTTGG CGCGAC CGA GGCGCG TTTTGTCGATGCGTT TERM 1547 1850965 - 1850981 + G 75 -2.2 -5.0133 | overlap 1850954 TTGGCGCGACCGAGG CGCGTT TTGTC GATGCG TTTTTTGAAGCGATG TERM 1548 1852006 - 1852041 + G 70 -4.7 -4.4715 | gap 1, opp_overlap 1852028 1852030, overlap 1852028 1852031 1852032 AAATTGGCCCCGCTG GCAATTTTGCGG-GTC TGAAT GACACCGCCAAGTGGC TTTTGTCACTTGGCA TERM 1549 1852032 - 1852055 + G 72 -13.2 -2.64872 | opp_overlap 1852030 1852028, overlap 1852006 1852031 1852028 GGTCTGAATGACACC GCCAAGTGGC TTTT GTCACTTGGC ATGTTATTGGGTCGG trkH-1 1850634 - 1852124 + | Trk system potassium uptake protein TERM 1550 1852525 - 1852493 - g 74 -11.3 -3.53012 | overlap 1852523 1852524 GCGCCGCTGCGGAAA CCGTCTGCGACTG GTCGGTG CAGGCGCAAACGG CACAGGCCGCCTATC ilvB 1852126 - 1853718 + | acetohydroxy acid synthase large subunit, putative RD1_1944 1855501 - 1853729 - | peptidoglycan binding domain-containing protein glyQ 1855659 - 1856600 + | glycyl-tRNA synthetase subunit alpha TERM 1551 1856866 - 1856907 + G 79 -9.3 -4.25104 | gap 1, overlap 1856868 1856869 GATCTACGTGGGCGT TGAGCGGGCCGTGCCG-CGC AAT GCGCCGGCGTGGTTCGCCTG TTTTGATGCCGCCGC TERM 1552 1856868 - 1856905 + G 80 -11.9 -3.73042 | gap 1, overlap 1856866 1856869 TCTACGTGGGCGTTG AGCGGGCCGTGCCG-CGC AAT GCGCCGGCGTGGTTCGCC TGTTTTGATGCCGCC TERM 1553 1856869 - 1856904 + G 79 -15.4 -2.83504 | gap 1, overlap 1856868 1856866 CTACGTGGGCGTTGA GCGGGCCGTGCCG-CGC AAT GCGCCGGCGTGGTTCGC CTGTTTTGATGCCGC RD1_1946 1856597 - 1857118 + | hypothetical protein TERM 1554 1858963 - 1858953 - g 76 -6.8 -4.43844 | CGAGGATGGAGAAAA CCTG ATC CAGG GCTTCAAGCGGGCCA TERM 1555 1859166 - 1859181 + G 75 -2.4 -5.0133 | CATGGCCACACTGCG CGCGCC GATT GATGCG TTTTTTGAGGCGGTG glyS 1857118 - 1859304 + | glycyl-tRNA synthetase subunit beta TERM 1556 1860132 - 1860156 + G 71 -6.4 -4.1891 | gap 1 AGCCAGGGACGCGAC GCGGTCGAGGG GGAT TCCTCGGC-GC TTTATCTTGGGCGCG TERM 1557 1860511 - 1860525 + G 74 -5.6 -4.56597 | CCAGTCCGGGTGCGG CGACCG GGG CGATCG TTTTTACCGCAACCG ppdK 1859397 - 1861934 + | pyruvate phosphate dikinase TERM 1558 1862100 - 1862111 + G 78 -2.2 -5.08088 | GGCATGCGAGTATTA CGTG CACA TACG TTTTTGTTGACCATT RD1_1949 1862088 - 1862711 + | cell wall hydrolase domain-containing protein TERM 1559 1863113 - 1863123 + G 71 -6.8 -4.25104 | overlap 1863109 ACTGGCGGAGCGCGT TGCG GAA CGCA TTTTGCTGGAACCGC folB 1862805 - 1863728 + | dihydroneopterin aldolase, putative TERM 1560 1863927 - 1863914 - f 70 -9.5 -3.35597 | overlap 1863912 CTGACGCGGGAAAGA CCGGC GGTG GCCGG GCTCGACTTCAGCCA TERM 1561 1864578 - 1864567 - g 73 -4.4 -4.58395 | GGCATCGCGCAAAAA GTTC ATCG GAAC GCTCGGCGGGGCCGA folP 1863920 - 1864744 + | dihydropteroate synthase TERM 1562 1865309 - 1865285 - g 70 -9.9 -3.55761 | GATTGATTGCGCAAA TGGCGCGGCAC ACC GCGTCGCACCA GAGGCGCTATGGGAA glmM 1864737 - 1866086 + | phosphoglucosamine mutase RD1_1953 1867208 - 1866288 - | integral membrane protein, putative TERM 1563 1867262 - 1867229 - R 88 -11 -4.13767 | gap 1, opp_overlap 1867230, overlap 1867230 CTTTCTACCGTAAAA GCG-TCACCCCGACG TGCTG CGCCGGGGTGATCGT GGTTCAAAGCTGTTG TERM 1564 1867230 - 1867261 + r 76 -13 -2.72227 | gap 1, opp_overlap 1867229 1867230 TTTCTACCGTAAAAG CG-TCACCCCGACGT GCT GCGCCGGGGTGATCG TGGTTCAAAGCTGTT TERM 1565 1867261 - 1867230 - R 91 -14.5 -3.08046 | gap 1, opp_overlap 1867230, overlap 1867229 TTTCTACCGTAAAAG CG-TCACCCCGACG TGCTG CGCCGGGGTGATCG TGGTTCAAAGCTGTT ilvC 1868305 - 1867283 - | ketol-acid reductoisomerase RD1_1955 1868443 - 1868898 + | AsnC family transcriptional regulator TERM 1566 1868962 - 1868981 + G 73 -10.6 -3.63627 | opp_overlap 1868959 1868960 ACGCGCTGCAAACTG CCGGCGCC TTGG GGCGGCGG TTTGGCCTGTCACAG RD1_1956 1868895 - 1869350 + | AsnC family transcriptional regulator RD1_1957 1869449 - 1870576 + | aminotransferase family protein, putative RD1_1958 1871768 - 1870569 - | 2-octaprenyl-6-methoxyphenyl hydroxylase RD1_1959 1872078 - 1871830 - | hypothetical protein TERM 1567 1872054 - 1872031 - G 78 -3 -5.0538 | overlap 1872034 1872036 GGGCAGCGCAAAAAA CAACCGCTGC CAAA GCGGCAATCG GGTAGGCGTGGCGGC TERM 1568 1872048 - 1872034 - G 78 -7.1 -4.63089 | overlap 1872031 1872036 CAGCGCAAAAAACAA CCGCT GCCAA AGCGG CAATCGGGTAGGCGT RD1_1960 1872803 - 1872159 - | pyrimidine 5'-nucleotidase, putative RD1_1961 1872856 - 1873551 + | GntR family transcriptional regulator RD1_1962 1875557 - 1873650 - | glycosyl transferase, putative TERM 1569 1875480 - 1875500 + g 72 -12.5 -3.01712 | overlap 1875482 GCCCTGATCTAGCAG CACCCGGCC AAT GGGCGGGTG TGTTACCGGGGGCGC carA 1876823 - 1875663 - | carbamoyl phosphate synthase small subunit RD1_1964 1877051 - 1877509 + | GatB/Yqey family protein TERM 1570 1877548 - 1877567 + F 73 -5 -4.58395 | gap 1, overlap 1877546 GAACCCCCACGATCT GCT-TTGCG CGG CGCAGCAGC TTTTTACAGGGTAAC TERM 1571 1877739 - 1877713 - f 78 -11.7 -3.28791 | gap 1, overlap 1877714 1877727 ACCTTGGTCGCACAA GCCTGCTGACAG CACG CTGTCAGCAG-C GGATGATAAGGTGTC TERM 1572 1877739 - 1877714 - f 72 -11.9 -2.57132 | overlap 1877713 1877727 CCTTGGTCGCACAAG CCTGCTGACAG CACG CTGTCAGCAGC GGATGATAAGGTGTC RD1_1965 1877778 - 1878497 + | hypothetical protein TERM 1573 1878570 - 1878600 + T 70 -9.8 -3.38072 | gap 1, overlap 1878594 TTTAGCGGCGCCATG CGCGTTGCAGCTC ATCATA GAG-TGCGACGCG TTCCTCTTCGCTGAG RD1_1966 1879038 - 1878556 - | hypothetical protein TERM 1574 1878878 - 1878865 - G 78 -5.2 -4.7261 | AGCCAGTAAAACAAA GGGG AGCAGG CCCC ATAACACCGGGGAGC TERM 1575 1879291 - 1879308 + r 86 -9.8 -4.31412 | opp_overlap 1879291 CCCGAACGCGAAAAA GCCCCG ACGGTG CGGGGC TTTTCCTGAGTGTTT TERM 1576 1879308 - 1879291 - R 91 -9.8 -4.66833 | opp_overlap 1879291 CCCGAACGCGAAAAA GCCCCG ACGGTG CGGGGC TTTTCCTGAGTGTTT ctaD 1881006 - 1879336 - | cytochrome c oxidase, subunit I RD1_1968 1881302 - 1881568 + | sensory box protein, putative TERM 1577 1881790 - 1881770 - g 100 -8.9 -4.9792 | overlap 1881771 TACTGCAGAGAAAAA CGCCGAAGC GGT GCTGCGGCA GGCCAATGCGTCGCT TERM 1578 1881789 - 1881771 - g 73 -10.2 -3.58029 | overlap 1881770 ACTGCAGAGAAAAAC GCCGAAGC GGT GCTGCGGC AGGCCAATGCGTCGC RD1_1969 1881543 - 1881857 + | sensory box protein, putative lipB 1882664 - 1881912 - | lipoyltransferase TERM 1579 1884117 - 1884172 + G 78 -6.9 -4.6008 | gap 2, overlap 1884125 ATTTACCGAACTGTC TTATGATG-CGG-CACGGCGGCGCGTG AACA CCCGTGCCGTCATGACCGTTATCGTGA TTTTCCTTGTGTTTT TERM 1580 1884125 - 1884163 + G 74 -10.9 -3.52111 | gap 1, overlap 1884117 AACTGTCTTATGATG CGG-CACGGCGGCGCGTG AACA CCCGTGCCGTCATGACCG TTATCGTGATTTTCC RD1_1973 1883254 - 1885179 + | ABC transporter, ATP-binding protein, putative TERM 1581 1885158 - 1885198 + F 77 -4 -5.03314 | opp_overlap 1885166 CAAGCTGCAGTTCAC CGAAGGGATCGC-CGCCG AATAAGG CGGCGCGTGA-CCTTACG TTTTTTCCAGATCGC lcfA 1885294 - 1887177 + | acyl-CoA synthetase RD1_1975 1888058 - 1887222 - | hypothetical protein RD1_1976 1889839 - 1888202 - | ABC transporter, ATP-binding protein, putative RD1_1977 1890648 - 1889836 - | ABC transporter, permease protein, putative RD1_1978 1891601 - 1890645 - | ABC transporter, permease protein, putative TERM 1582 1890861 - 1890813 - G 73 -10.2 -3.64703 | gap 1, opp_overlap 1890818, overlap 1890815 1890818 GCCGGGGTAGGCAAA GA-CGACCTCGACCACCACGACG CCCA CGACGAGGTAGGCGAGGTTGATC ATGACCACATTCACG TERM 1583 1890858 - 1890815 - G 76 -13 -3.40597 | opp_overlap 1890818, overlap 1890813 1890818 CGGGGTAGGCAAAGA CGACCTCGACCACCACGACG CCCA CGACGAGGTAGGCGAGGTTG ATCATGACCACATTC TERM 1584 1890855 - 1890818 - G 75 -13.3 -2.86124 | opp_overlap 1890818, overlap 1890815 1890813 GGTAGGCAAAGACGA CCTCGACCACCACGACG CCCA CGACGAGGTAGGCGAGG TTGATCATGACCACA TERM 1585 1891581 - 1891553 - G 100 -14.5 -4.4261 | opp_overlap 1891552 1891551, overlap 1891558 CGGCGAAGAGCAAAA GGATACCCAGCGC AAC GCGCTGGGTTACC AGTTTCACAATGGGA TERM 1586 1891576 - 1891558 - G 85 -16 -3.14195 | opp_overlap 1891552 1891551, overlap 1891553 AAGAGCAAAAGGATA CCCAGCGC AAC GCGCTGGG TTACCAGTTTCACAA RD1_1979 1893210 - 1891615 - | ABC transporter, periplasmic binding protein, putative TERM 1587 1891790 - 1891830 + g 81 -6 -4.72986 | gap 1, overlap 1891791 TCCGAATAGATGGCC TTGC-GCTTGCCCTCGTCG ATTT CGGCGCGGGCGGCCAGCAG TTTTTCGTCGAACTC TERM 1588 1892104 - 1892118 + g 71 -5.6 -4.36554 | overlap 1892079 CAGGATGATGGGCGA TCCGTC ATG GCCGGA TTTCTTGTAGTGCTC RD1_1980 1895319 - 1893328 - | X-Pro dipeptidyl-peptidase family protein, putative TERM 1589 1893462 - 1893421 - G 78 -4.3 -4.84527 | gap 1, opp_overlap 1893432 1893445 1893457, overlap 1893422 TGCAGAGAGGAAAAA CGTGTCGGCATCGCACCACA TTT TGCTGTGCGTTTCCGT-ACG CAGGCGTATGTTGTC TERM 1590 1894496 - 1894475 - G 74 -6.5 -4.36914 | gap 1 GCCTCCTGCAGAAAA CCGATGCGCG GTT CGGGCA-CGG CGAAATGGGGGTATT ttuD 1896416 - 1895373 - | hydroxypyruvate reductase TERM 1591 1895564 - 1895523 - G 76 -14.3 -2.61264 | gap 1, overlap 1895522 TTCGCCATCGACAAT GGCCCCGGCGGCATCGGTCG GCC CGTCCG-TGCCATCGGTGCC TGCAACCAGCACCTC RD1_1982 1896962 - 1896516 - | D-tyrosyl-tRNA deacylase RD1_1984 1898112 - 1897006 - | hypothetical protein RD1_1985 1898534 - 1898109 - | hypothetical protein RD1_1986 1899758 - 1898622 - | hypothetical protein RD1_1987 1900730 - 1899786 - | putative lipoprotein telA 1901933 - 1900737 - | tellurite resistance protein TelA TERM 1592 1901881 - 1901899 + g 71 -6.6 -4.23104 | opp_overlap 1901866, overlap 1901882 CTCGCTGCGGTCACT TCCTCGAC CAT GGCGAGGG TTTGTTCGGCTTTGA RD1_1990 1902851 - 1901967 - | hypothetical protein RD1_1991 1902970 - 1902854 - | hypothetical protein TERM 1593 1903105 - 1903123 + r 74 -2.3 -5.08169 | opp_overlap 1903064 1903062 1903097, overlap 1903097 1903106 GGGGAAAGACGCAGG GCACGCG TCATT TGCGTGG TTTTTTGGCGTATCT RD1_1992 1903969 - 1903112 - | RNA pseudouridylate synthase family protein, putative RD1_1993 1904015 - 1904482 + | cytidine and deoxycytidylate deaminase family protein RD1_1994 1905179 - 1904490 - | metallo-beta-lactamase family protein TERM 1594 1905619 - 1905640 + G 75 -7.9 -4.21194 | GCTTTTCATTCCCTA CGCCGGCAT GATG GTCCCGGCG TTTTCCCTGATCCCG RD1_1995 1905278 - 1905937 + | hypothetical protein RD1_1996 1905998 - 1905903 - | hypothetical protein TERM 1595 1906002 - 1905982 - G 100 -10.4 -5.21709 | opp_overlap 1905982 1905974 GCCCACATGAAAAAA GGCTGCGC GGGGT GCACAGCC TTTGAACGTTTTTCG RD1_1997 1906285 - 1906031 - | ribosomal protein L33-related protein TERM 1596 1906187 - 1906197 + g 74 -6.8 -4.29153 | AATTTTGATCGTGGT TGGC TTG GCCA TGTTTTTTCTCCTGC TERM 1597 1906547 - 1906565 + r 80 -8.8 -4.14392 | overlap 1906536 TGTTGCCAGCCGCGC GGTGGGCT CTT ACCCCACC TTTTCACCCTTGCCC RD1_1998 1907474 - 1906800 - | N-acetylmuramoyl-L-alanine amidase, putative RD1_1999 1908127 - 1907435 - | hypothetical protein gatA 1909657 - 1908170 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 1598 1909192 - 1909204 + g 74 -3.3 -4.7871 | CGCCCGAAGAGCCCC CCGGT GTC AACGG TTTTTCATCGTCCTT gatC 1909944 - 1909657 - | glutamyl-tRNA(Gln) amidotransferase, C subunit TERM 1599 1910229 - 1910203 - R 100 -13.1 -5.45802 | gap 1, opp_overlap 1910203 TCGGCAAAATAAAAA GCCTGCCAAGTC AGGC GACT-GGCAGGC TTTGGTCTTTCGTCG TERM 1600 1910203 - 1910229 + r 93 -13.1 -4.02719 | gap 1, opp_overlap 1910203 TCGGCAAAATAAAAA GCCTGCCAAGTC AGGC GACT-GGCAGGC TTTGGTCTTTCGTCG RD1_2002 1910997 - 1910260 - | hypothetical protein TERM 1601 1910890 - 1910913 + g 71 -6 -4.29106 | gap 1, opp_overlap 1910890 1910889 1910887 GAAAGTGATCAACAT GCCTACG-GAC ATC GTCGCGTAGAC TTTATTCATGTGGGC RD1_2003 1911433 - 1911173 - | hypothetical protein RD1_2004 1911511 - 1912386 + | LysR family transcriptional regulator TERM 1602 1912466 - 1912501 + F 75 -6.2 -4.62904 | gap 2 CTGATTGAACTTTTC GTGA-AC-GCGGCAGG CCCGGC CCTGCCGCAGCGTCAC TTTTTCGCCCTGTTT phrR 1912867 - 1913244 + | Cro/CI family transcriptional regulator putative TERM 1603 1913309 - 1913271 - f 91 -11.7 -4.15222 | gap 1, opp_overlap 1913269 1913278 1913280 ATGTTTGCGAAGAAA CCACCT-GCGCCGCCCCT TGCG AGGGGCGGTGTTAGATGG CATTTGCTCCGGCTA TERM 1604 1913278 - 1913301 + F 93 -16 -3.08966 | opp_overlap 1913271, overlap 1913269 1913280 CGAAGAAACCACCTG CGCCGCCCCT TGCG AGGGGCGGTG TTAGATGGCATTTGC TERM 1605 1913280 - 1913299 + F 91 -15 -3.10071 | opp_overlap 1913271, overlap 1913278 1913269 AAGAAACCACCTGCG CCGCCCCT TGCG AGGGGCGG TGTTAGATGGCATTT TERM 1606 1913394 - 1913407 + G 73 -5.2 -4.62336 | overlap 1913393 CCGACGCCGCGCGCG CGGC CATCCT GCCG TTTTTCCGATCACCT RD1_2006 1913306 - 1914130 + | inositol monophosphatase family protein atzB 1914127 - 1915467 + | hydroxydechloroatrazine ethylaminohydrolase guaD 1916825 - 1915518 - | guanine deaminase TERM 1607 1915857 - 1915845 - G 71 -6.9 -4.28254 | opp_overlap 1915849 GCGCAACATCGAAAA CGACG ACC CGCCG CCCGTGTCTGTTGCC TERM 1608 1916324 - 1916312 - G 78 -10.5 -3.97834 | opp_overlap 1916295 GAACGGTATCACAAA GCGCC TCC GGCGC ATTGCGGTCCATGCA TERM 1609 1916736 - 1916723 - G 75 -8.1 -4.25104 | overlap 1916725 1916726 CGTCTCGCAGCAAAA CAGCG CCAT CGCTG GCGACCGTCACGGCC TERM 1610 1916867 - 1916904 + H 95 -14.1 -3.50393 | opp_overlap 1916864 1916862 1916861, overlap 1916869 1916870 CAACAGCAACGATCA TCCGCGCGCGCCATTGT AACC ACATTGGCGCGCGCCTA TTGTCTGCCCTGCAG TERM 1611 1916869 - 1916902 + H 100 -16.7 -3.32698 | opp_overlap 1916864 1916862 1916861, overlap 1916867 1916870 ACAGCAACGATCATC CGCGCGCGCCATTGT AACC ACATTGGCGCGCGCC TATTGTCTGCCCTGC TERM 1612 1916870 - 1916901 + H 100 -20.2 -2.59298 | opp_overlap 1916864 1916862 1916861, overlap 1916869 1916867 CAGCAACGATCATCC GCGCGCGCCATTGT AACC ACATTGGCGCGCGC CTATTGTCTGCCCTG TERM 1613 1918269 - 1918281 + G 85 -5.5 -5.1361 | overlap 1918245 TTGTGACAACCGTCA CCGAT GTG GTCGG TTTTTTCGCCTTTCT mgtE 1916933 - 1918324 + | putative magnesium transporter RD1_2010 1918321 - 1918893 + | 5-formyltetrahydrofolate cyclo-ligase, putative TERM 1614 1919137 - 1919118 - g 79 -9.2 -4.23892 | overlap 1919111 CGCAATCACGGAAAA CCTGCCGC GACT GAGGCAGG AATGGCGGTTGGATT RD1_2012 1919056 - 1919868 + | hypothetical protein RD1_2013 1919865 - 1920770 + | integral membrane protein, putative trkA 1920822 - 1922603 + | Trk system potassium uptake protein trkA RD1_2015 1923266 - 1922634 - | hypothetical protein TERM 1615 1922802 - 1922831 + g 75 -7.7 -4.15222 | gap 1 CCGAATCTTTTCCAC GTC-CGGCGGCCGG GCA CCGGCGGCGGCGGC TTTCTTGCGCGCGAT RD1_2016 1925108 - 1923336 - | TrkA domain-containing protein RD1_2017 1925218 - 1925120 - | hypothetical protein RD1_2018 1925358 - 1926098 + | hypothetical protein RD1_2019 1926402 - 1926148 - | hypothetical protein TERM 1616 1926207 - 1926217 + g 71 -8.2 -4.07568 | opp_overlap 1926182 GGGCCCACGACGGGG CGGC GTT GCCG TTTTGCGCGGCACGC RD1_2020 1926574 - 1927479 + | integral membrane protein, putative TERM 1617 1927454 - 1927484 + F 85 -4.7 -5.1963 | opp_overlap 1927445 1927444 GCAAACCAACGACAC CGACGCTGAAC GAGACCAAA GGTTAGCGTCG TTTTTATTGATTGAC TERM 1618 1928079 - 1928065 - g 74 -5.6 -4.56597 | opp_overlap 1928072 TGTCGCGTTCAAAAA GTGCCG ACG CCGCAC GCGATACCGCCCTTG betI 1927554 - 1928129 + | transcriptional regulator BetI TERM 1619 1928239 - 1928227 - g 73 -4.7 -4.70879 | GCCAAACCTGAAAAA GCTCG CCG CGCGC TCAACACGGTTCAAG betC-1 1928126 - 1929634 + | choline sulfatase TERM 1620 1930732 - 1930756 + G 75 -8.4 -4.18018 | GCGTCTTGTCTTTGG CGGCGCGCGG ATGGA CCGCGCGGGG TTTTACGTGCAACCC betB 1929674 - 1931131 + | betaine aldehyde dehydrogenase TERM 1621 1932982 - 1932956 - g 76 -7.3 -4.56775 | ATGGTGGGGGAAAAA GTCTCTGACCA CCTGC TGGGCAAAGAC ACATTGGCGCGCAGC betA 1931387 - 1933045 + | choline dehydrogenase RD1_2025 1933105 - 1933776 + | succinoglycan biosynthesis protein, putative RD1_2026 1935206 - 1933779 - | DNA-binding protein, putative TERM 1622 1934771 - 1934734 - G 89 -9.8 -4.49906 | gap 1, opp_overlap 1934734, overlap 1934735 CAATAGTGAAAGAAA TCGCGCACCTCTTCCCA TGGAC TGGGA-GTGGCGCGCGC ATCTTCGCGCCCCAA TERM 1623 1934770 - 1934735 - G 81 -13.3 -3.28859 | gap 1, opp_overlap 1934734, overlap 1934734 AATAGTGAAAGAAAT CGCGCACCTCTTCCCA TGGAC TGGGA-GTGGCGCGCG CATCTTCGCGCCCCA RD1_2027 1936556 - 1935291 - | MFS protein, putative TERM 1624 1936282 - 1936251 - G 77 -7.9 -4.30719 | overlap 1936252 CGTGGCGAGAAGAAA GCCGGCCAGAC CGACCAGAAT GACCGGCCGGC GCCCGAAGTTATCCG TERM 1625 1936600 - 1936610 + H 81 -8.2 -4.26903 | opp_overlap 1936594 1936596, overlap 1936596 GCGCAGACACACCGT CCCG GGC CGGG TTTTGATGAGCTGCG TERM 1626 1937750 - 1937760 + G 93 -6.8 -5.1861 | opp_overlap 1937736 1937745 1937746, overlap 1937748 ACCGCGAAAAGCCGC CGGT ACG ACCG TTTTTTGATGATCCG TERM 1627 1938013 - 1938027 + G 71 -5.6 -4.386 | opp_overlap 1938010, overlap 1938002 1938002 AGCTCGCGCAAAGCG GCGCGT TTC GTGCGC TTTTGTGACGCCTTC pccB 1936990 - 1938522 + | propionyl-CoA carboxylase, beta subunit RD1_2029 1938631 - 1939023 + | hypothetical protein TERM 1628 1939228 - 1939252 + G 70 -5 -4.57073 | gap 2, overlap 1939241 TCACGACCGCAAGCC CGCGG-A-CCGT CGG GCGGATGCCGCG TTTTTCAAAGCGCTG TERM 1629 1939425 - 1939412 - g 74 -3.7 -4.7497 | opp_overlap 1939412 1939420 1939421 GTCATTGACGAAAAA GTGGC GCGC GCCTC TTTCCCGGAGGCCTT RD1_2030 1939103 - 1939450 + | hypothetical protein TERM 1630 1939621 - 1939659 + F 95 -14 -3.34715 | gap 1, overlap 1939619 1939632 CGTACCCCTTCCCCT GACGGGCAAC-GTGGCG CTTTTT TGCCATTGTTGCCCGTC TCTTTGAGCAGGGTG RD1_2031 1939764 - 1939970 + | hypothetical protein TERM 1631 1940002 - 1940030 + F 100 -20.3 -3.66883 | CAAGCGCCTTCATTC GGGCTGCGCAGGC TAG GCTTGCGCGGCCC TTTGGCATGTCTTGG pccA 1940087 - 1942132 + | propionyl-CoA carboxylase, alpha subunit TERM 1632 1942177 - 1942206 + T 100 -12.7 -4.25848 | opp_overlap 1942177 1942176 1942174 ATTTTCAGGAAAGAT GCCGCGCGCTACC CTTC GGCGGCGCGCGCC TTTTCCTCGCGGATT TERM 1633 1942206 - 1942177 - T 75 -12.7 -2.66873 | opp_overlap 1942177, overlap 1942176 1942174 ATTTTCAGGAAAGAT GCCGCGCGCTACC CTTC GGCGGCGCGCGCC TTTTCCTCGCGGATT RD1_2033 1942640 - 1942185 - | hypothetical protein TERM 1634 1942868 - 1942887 + GH 74 -10.6 -3.59738 | overlap 1942885 TTTTCAGGACTATCT GCGCCGCC ATGC GGAGGCGC TTTCGGCGTGTGATA TERM 1635 1943661 - 1943646 - gH 73 -10.4 -3.34398 | overlap 1943644 1943649 CGCCGCCCGGAAAGA GCAGGG CCAA CCCTGC CGCGGATGGCACAAA RD1_2034 1942806 - 1943729 + | hypothetical protein mutA 1943692 - 1945821 + | methylmalonyl-CoA mutase TERM 1636 1945916 - 1945928 + G 78 -2.6 -5.03314 | CCTGCAAGACGGTGG CGCG CATGA CGTG TTTTTTACGCATAAC RD1_2036 1945818 - 1946435 + | hypothetical protein TERM 1637 1946570 - 1946532 - g 76 -6.7 -4.57569 | gap 2, opp_overlap 1946562, overlap 1946533 CCACGGTGCCAAAAA CCAGCGCAGAGGT--CGCG GCG CGCATCACCTCAGCGCCGA CGCAGTTTCATATCG RD1_2037 1946432 - 1946908 + | acetyltransferase, putative djlA 1946960 - 1947640 + | DnaJ-like protein, putative RD1_2040 1947742 - 1948071 + | hypothetical protein TERM 1638 1948150 - 1948172 + T 74 -2.6 -5.0538 | GTGATGTTCCAGGTG CTTCGTCAGG CGC TCTAACGCAG TTTTTTGACCTCGAC RD1_2041 1949726 - 1948164 - | Ppx/GppA family phosphatase putative TERM 1639 1948426 - 1948439 + g 70 -5.2 -4.46112 | opp_overlap 1948426 TATAGCTCGGCAAAA CGCG TCCCTT CGCG TTTGTTTGAATAGCG ppk 1952058 - 1949833 - | polyphosphate kinase TERM 1640 1950557 - 1950547 - G 70 -3.2 -4.62336 | ATCGCAGGTGAAAAA CGAA AGG TCCG TGTAAATCCGCGCCG TERM 1641 1951573 - 1951563 - G 85 -6.8 -4.82901 | opp_overlap 1951563 1951557 CCTGCGTCAGAAAAA CCTC TTC GAGG TACTTCTTGTCTGCA RD1_2043 1952731 - 1952048 - | hypothetical protein RD1_2044 1953800 - 1952733 - | hypothetical protein TERM 1642 1953789 - 1953799 + g 78 -2.4 -5.08178 | CAACTGATCCCGGAT GGGC AGG GCCA TTTTTCTCTCTCTGT proS 1954002 - 1955357 + | prolyl-tRNA synthetase TERM 1643 1955369 - 1955395 + F 80 -10 -3.97388 | opp_overlap 1955365, overlap 1955363 1955365 GTAAGCAAGGACGCG CGGCGCGGGGCT TTG AGCGGCGCGCTG TTTCTGCTAGGCTGT RD1_2046 1955445 - 1955942 + | hypothetical protein RD1_2047 1955995 - 1957281 + | lipoprotein releasing system transmembrane protein, putative lolD 1957274 - 1957957 + | ABC transporter, ATP-binding protein, putative RD1_2049 1958004 - 1958999 + | malate/L-lactate dehydrogenase, putative RD1_2050 1959426 - 1958983 - | hypothetical protein TERM 1644 1959201 - 1959166 - G 75 -13.4 -2.87132 | gap 1 GCTGGGTGCGATATA GGTGATGCTGAGCACGT AGA ACGCGATCAGCA-CACC GGCAAGGAACAAGTG TERM 1645 1959323 - 1959306 - G 70 -3.3 -4.64676 | gap 1, overlap 1959290 CCACGGTGAACAAAA CCGTCGCC GCA GCCG-CGG GAGAGCCGATCTTGG RD1_2051 1959552 - 1959932 + | hypothetical protein RD1_2052 1960559 - 1959933 - | hypothetical protein RD1_2053 1960633 - 1960746 + | hypothetical protein RD1_2054 1960760 - 1961155 + | cytochrome c family protein, putative TERM 1646 1961198 - 1961237 + F 74 -7.8 -4.11216 | opp_overlap 1961202 1961203, overlap 1961203 GTGAGGCATCGTGAC GAAACGGGGGCTTTTTGT GTCA ACGAAGCGCCCCCATCTC TTTTCCAGATCGCAG RD1_2055 1961515 - 1961799 + | hypothetical protein TERM 1647 1961892 - 1961880 - T 80 -9.1 -4.07568 | opp_overlap 1961880 GGGCGTCTTGCAAAA GGTCC GGG GGACC TTTTGAGCCCGGAGG TERM 1648 1961880 - 1961892 + T 80 -9.1 -4.07568 | opp_overlap 1961880 GGGCGTCTTGCAAAA GGTCC GGG GGACC TTTTGAGCCCGGAGG TERM 1649 1961962 - 1961988 + T 81 -12.2 -3.54424 | opp_overlap 1961931 1961930, overlap 1961963 GGGGGGAGGTCGGGC GCTGCCCGAGGC GGG GCCTCGGGCACA TTTGCAAAACTGCAG TERM 1650 1961963 - 1961987 + T 86 -15.7 -2.72511 | opp_overlap 1961931 1961930, overlap 1961962 GGGGGAGGTCGGGCG CTGCCCGAGGC GGG GCCTCGGGCAC ATTTGCAAAACTGCA RD1_2056 1962768 - 1962049 - | hypothetical protein parE 1964813 - 1962765 - | DNA topoisomerase IV subunit B RD1_2058 1965001 - 1964810 - | hypothetical protein RD1_2059 1966460 - 1965177 - | hypothetical protein TERM 1651 1967388 - 1967407 + G 80 -3.5 -5.09762 | CCTGTGGCGGGCCGA CTGGCAG ATGTTG CTGCAAG TTTTTCTGTTGGGCT TERM 1652 1967898 - 1967918 + G 71 -8.9 -3.77906 | CGCCGTCAGCTATTG GGGCGTGGG CAT CCCGTGCTC TTATGTGTTTGGGTT RD1_2060 1966561 - 1968069 + | MATE efflux family protein RD1_2061 1969008 - 1968226 - | n-formylglutamate amidohydrolase, putative TERM 1653 1968279 - 1968291 + g 73 -4.7 -4.60487 | overlap 1968271 CGCGCAGCGTTTCCC GCAGG GGT CCGGC TTTTTCAGCGTCGTA RD1_2062 1969958 - 1969122 - | hypothetical protein TERM 1654 1969717 - 1969727 + g 74 -3.2 -4.7254 | TTCGGACCCAGCAAT TCCT CAA AGGG TTTTTCATCCACGAT TERM 1655 1969971 - 1969986 + r 75 -6.1 -4.58685 | CATATTTGTCTCCCT GCCGT CAGATC ACGGC TTTTTCCAAGAATTT RD1_2063 1971168 - 1969975 - | oxidoreductase, putative RD1_2064 1972271 - 1971252 - | phosphotransferase, putative TERM 1656 1971309 - 1971293 - G 76 -8.7 -4.07885 | CATCGTGGGCCAAAA GCGCAAT CAC ATCGCGC AACCGCTCTGTATCC RD1_2065 1972370 - 1973605 + | acyl-CoA dehydrogenase family protein TERM 1657 1973765 - 1973726 - f 75 -5.7 -4.61873 | opp_overlap 1973727 1973727 1973762, overlap 1973727 1973728 GTCGATAAATGAAAA GCCGCGGGCGCC-GATATC AGCG GATTTCCGGCACCTGCG-C GTTTGGCGCTGACTT RD1_2066 1973795 - 1973893 + | hypothetical protein TERM 1658 1974084 - 1974074 - g 70 -4.6 -4.53602 | opp_overlap 1974074 TGCACAGGAAACAAA CCGC ACG GCGA TATTCTTTGGGTTCC RD1_2067 1973931 - 1974824 + | renal dipeptidase family protein, putative TERM 1659 1976394 - 1976418 + G 70 -9.9 -3.5594 | overlap 1976413 CAGACCGCTGGACCC GGATCACCCTG TGT CAGGGTGCGCC TTTGGCGGATGAATT RD1_2068 1974821 - 1976479 + | hypothetical protein TERM 1660 1976691 - 1976708 + G 76 -12.7 -3.27653 | overlap 1976690 AGCGTTGAGCACTGC GCGCACC GACG GGTGCGC TGTTGTCGTCAGCGT RD1_2069 1976455 - 1976976 + | hypothetical protein truA 1977755 - 1976973 - | tRNA pseudouridine synthase A TERM 1661 1978649 - 1978666 + G 70 -4 -4.58663 | opp_overlap 1978649 1978650 TTTGAAGCCTATAAA CGCGCG GTCGTG CGCCCG TTTTTCCGGGATCAT RD1_2071 1977869 - 1979284 + | hypothetical protein TERM 1662 1979453 - 1979471 + G 82 -9.6 -4.37886 | opp_overlap 1979453, overlap 1979454 TCAAGGTTGCCAAGA TCGACAAC AAG GTTGTCGG TTTTATCGCCCGTCA RD1_2072 1979281 - 1979766 + | acetyltransferase, putative TERM 1663 1979893 - 1979924 + G 89 -6.4 -5.09426 | gap 1, opp_overlap 1979878 1979879, overlap 1979883 1979893 1979895 GCGTGGCAGGGCTGG CC-GCGCGCCGCCCG TCC CGGCTTGTGCGCTGG TTTTTTGGCCTTGGC TERM 1664 1980227 - 1980208 - g 74 -7 -4.36914 | overlap 1980220 1980221 TCGCGCTGTATAAAA CCCGCGAG GAAA CCCGCTGG GCACGCGGACGGTTT TERM 1665 1980709 - 1980696 - g 73 -4.5 -4.65895 | gap 1 TTCGCGACGCAAAAA CGC-CC GAA GGTGCG CGAGATCATCACCAA RD1_2073 1979766 - 1980761 + | hypothetical protein TERM 1666 1982066 - 1982078 + G 71 -9.1 -3.76224 | ACGGCCTGCGTGATT TCCGC GCT GCGGA TTTCGTGACTGACAC ileS 1980967 - 1983960 + | isoleucyl-tRNA synthetase TERM 1667 1984003 - 1983969 - f 77 -8.4 -4.14243 | opp_overlap 1983972 1983976 GAGCTGACCCGAAAA GGCGCGGCCCGAAAGC GCA GCTTTCGGGTTGTTCC GAGGGCCGTGATGCG TERM 1668 1983976 - 1983996 + F 100 -15.5 -3.61398 | opp_overlap 1983969, overlap 1983972 CCCGAAAAGGCGCGG CCCGAAAGC GCA GCTTTCGGG TTGTTCCGAGGGCCG ogt 1984032 - 1984487 + | methylated-DNA--protein-cysteine methyltransferase TERM 1669 1984644 - 1984660 + G 73 -4.3 -4.58663 | TGATGCGCCGTCATT GCGGATC AGT GGTGCGC TTTTTCCGGGATGAT RD1_2076 1984579 - 1984674 + | hypothetical protein pcs 1985347 - 1984649 - | phosphatidylcholine synthase, putative xerC 1986341 - 1985421 - | site-specific tyrosine recombinase XerC RD1_2079 1987045 - 1986338 - | hypothetical protein tal 1987843 - 1987190 - | putative translaldolase TERM 1670 1989004 - 1989024 + G 73 -13.3 -2.77182 | overlap 1989000 CAGTGCTGCGCGCTT CGATCTGCG GGG CGCAGGTCG TGCTTGCCTCTGCCA priA 1988001 - 1990163 + | primosome assembly protein PriA TERM 1671 1990924 - 1990942 + G 89 -6.6 -5.1286 | GCGCTGCAGTTCATG TCCGGCGC ACG GCGTCAGA TTTTTGTGGTTTTTG TERM 1672 1991190 - 1991203 + G 75 -2.4 -4.88918 | GGCGGCGACGCTTTA TGTG CTGGAT CACA TTTTCTTTGGGCTCG RD1_2082 1990255 - 1991487 + | MFS protein, permease component, putative TERM 1673 1991619 - 1991641 + G 70 -3.4 -4.67641 | gap 1, opp_overlap 1991610 GCACAATTGGGGGAC CCGA-GGCT TGTTGC GGCCATCGG TTTTGCTTTTGCGAT RD1_2083 1991517 - 1992875 + | MATE efflux family protein, putative prmA 1992875 - 1993747 + | ribosomal protein L11 methyltransferase, putative TERM 1674 1993909 - 1993874 - g 73 -5.2 -4.60041 | ACTCAGTTTGAAAAA CGGCGCGACAGGCTTG AGCG CAGGCATCGCGCACCG GCCAAAGGCTATGTG RD1_2085 1993844 - 1994188 + | hypothetical protein TERM 1675 1994219 - 1994260 + T 78 -5.8 -4.7173 | opp_overlap 1994191 1994225, overlap 1994221 1994225 CATGCGCAATCACAT AAAAAAGCCGCGCTTTCC CGTATC GGAAAACGCGGCTTGGTG TTTTTGCCTATCGTG TERM 1676 1994221 - 1994258 + T 74 -8.4 -3.96999 | opp_overlap 1994191 1994225, overlap 1994219 1994225 TGCGCAATCACATAA AAAAGCCGCGCTTTCC CGTATC GGAAAACGCGGCTTGG TGTTTTTGCCTATCG TERM 1677 1994254 - 1994225 - T 100 -15.8 -5.42131 | opp_overlap 1994221 1994219 1994225, overlap 1994191 CAATCACATAAAAAA GCCGCGCTTTCC CGTATC GGAAAACGCGGC TTGGTGTTTTTGCCT TERM 1678 1994225 - 1994254 + T 89 -13.6 -3.61527 | opp_overlap 1994191 1994225, overlap 1994221 1994219 CAATCACATAAAAAA GCCGCGCTTTCC CGTATC GGAAAACGCGGC TTGGTGTTTTTGCCT RD1_2086 1994526 - 1994308 - | hypothetical protein ruvC 1994802 - 1995365 + | Holliday junction resolvase ruvA 1995362 - 1996018 + | Holliday junction DNA helicase motor protein ruvB 1996043 - 1997065 + | Holliday junction DNA helicase B RD1_2091 1997108 - 1997734 + | hypothetical protein RD1_2092 1997731 - 1998129 + | thioesterase family protein tolQ 1998228 - 1998923 + | putative proton transporter TolQ TERM 1679 1998996 - 1998968 - g 73 -9.4 -3.96148 | GGGCGGCAGCACAAA GCGGCGCAGGCG GACCA CGCGCGCGCAGC CCATGTCCGAGATCA RD1_2095 1998927 - 1999421 + | ExbD/TolR family biopolymer transport protein RD1_2096 1999484 - 2000524 + | hypothetical protein tolB 2000521 - 2001852 + | translocation protein TolB pal 2001942 - 2002454 + | peptidoglycan-associated lipoprotein, putative RD1_2099 2002459 - 2003304 + | hypothetical protein TERM 1680 2004188 - 2004157 - g 100 -13.7 -4.82901 | GCGCCGCGACAAAAA GCCCTCACCGCCG CTCTGT CGGCGTTAAGGGC CAGCGGCAGCGCAAC RD1_2100 2003311 - 2004555 + | hypothetical protein ftsH 2004636 - 2006561 + | cell division protein FtsH TERM 1681 2006610 - 2006640 + F 100 -13.3 -4.00782 | opp_overlap 2006616, overlap 2006611 2006616 ATCTGCGGCCTCACT TGCAAACCCCGCC CTTTC GGCGGGGTTTTCG TTTGTACTGATGTGA TERM 1682 2006611 - 2006639 + F 86 -14.6 -2.99987 | opp_overlap 2006616, overlap 2006610 2006616 TCTGCGGCCTCACTT GCAAACCCCGCC CTTTC GGCGGGGTTTTC GTTTGTACTGATGTG TERM 1683 2006616 - 2006634 + F 100 -13.1 -4.63479 | opp_overlap 2006616, overlap 2006611 2006610 GGCCTCACTTGCAAA CCCCGCC CTTTC GGCGGGG TTTTCGTTTGTACTG TERM 1684 2006634 - 2006616 - f 85 -13.1 -3.57144 | opp_overlap 2006616 2006611 2006610 GGCCTCACTTGCAAA CCCCGCC CTTTC GGCGGGG TTTTCGTTTGTACTG TERM 1685 2007561 - 2007545 - g 77 -3.5 -5.00884 | opp_overlap 2007550 ACCTGCCGCAAAAAA CCGGCGC GGT GTGACGG CTTGGGTCGAACGTG RD1_2103 2007066 - 2007677 + | MOSC domain-containing protein TERM 1686 2007689 - 2007701 + F 73 -9.1 -3.90744 | CTAGCGCGTGGGGGG CGCCT GTC AGGCG TTGTTTCCACCAGGA TERM 1687 2008337 - 2008354 + G 79 -8.3 -4.55887 | opp_overlap 2008325 2008347 2008348 AAAGCGCAACTGGAA GCGCCGG AAAG CCCGCGC TTTGTCTTTTTCACA RD1_2104 2008142 - 2008612 + | hypothetical protein folD 2008627 - 2009529 + | FolD bifunctional protein RD1_2106 2009963 - 2009526 - | hypothetical protein RD1_2107 2010635 - 2009973 - | hypothetical protein RD1_2108 2013128 - 2010675 - | DEAD-box ATP dependent DNA helicase RD1_2109 2014492 - 2013185 - | hypothetical protein TERM 1688 2014085 - 2014096 + gH 73 -5.8 -4.3898 | overlap 2014083 ATGCCCCATCGCATC GGTC AACT GACC TTTTGTGACCATGAT RD1_2110 2014481 - 2014660 + | hypothetical protein TERM 1689 2014829 - 2014790 - TR 71 -11.3 -2.87132 | GCCCGGTGCGATATA GGGCGCGGCGAAGGCGA TGAATT TCGCATCCCCCGCCCCC ATCGCCCCGATGGCA RD1_2111 2015935 - 2015078 - | TPR domain-containing protein TERM 1690 2015914 - 2015894 - G 70 -10.3 -3.53712 | ACCTGCAACAAGCAA CGCGCCCGC AAC GCAGGCGGG AAAAACGTAAGGGTG TERM 1691 2015929 - 2015945 + g 81 -4.4 -4.95155 | gap 1, overlap 2015929 GAAAAACGTAAGGGT GG-CGCA TTTT TGCGTCC TTTTTCTGCTCTGGC RD1_2112 2016559 - 2015966 - | TPR domain-containing protein TERM 1692 2016032 - 2016053 + g 75 -2.9 -4.98672 | overlap 2016049 GTATTCACTGCTTTT TTCTGCCTC CAGC GTAGCAGAA TTTTCTGTTTTTGCG TERM 1693 2016049 - 2016060 + g 73 -4.4 -4.59773 | overlap 2016032 CTGCCTCCAGCGTAG CAGA ATTT TCTG TTTTTGCGAGTGCCA RD1_2113 2017623 - 2016556 - | TadC family type II/IV secretion system protein RD1_2115 2018513 - 2017551 - | type II secretion system protein, putative RD1_2116 2020001 - 2018544 - | type II/IV secretion system protein, putative RD1_2117 2021256 - 2020021 - | hypothetical protein TERM 1694 2020671 - 2020705 + g 75 -13.6 -2.92667 | opp_overlap 2020670 2020671, overlap 2020668 2020677 ATTGCAGGTCGAAAT CGATCAGGCAGACGCG TGG TGCGTCTGTCTTGTCG TGGTTTGCAAGTTCC TERM 1695 2020677 - 2020699 + g 74 -12 -3.49924 | opp_overlap 2020671 2020670, overlap 2020671 2020668 GGTCGAAATCGATCA GGCAGACGCG TGG TGCGTCTGTC TTGTCGTGGTTTGCA TERM 1696 2021515 - 2021494 - R 100 -14.5 -5.4505 | opp_overlap 2021494 CGGGCCAACAAAAAA GGCAGAGCA TGGC TGCTCTGCC TTGTGTTTCTGCGGC TERM 1697 2021494 - 2021515 + r 100 -14.5 -3.89695 | opp_overlap 2021494 CGGGCCAACAAAAAA GGCAGAGCA TGGC TGCTCTGCC TTGTGTTTCTGCGGC RD1_2119 2021926 - 2021543 - | hypothetical protein RD1_2120 2023322 - 2021931 - | type II/III secretion system protein, putative RD1_2121 2023337 - 2023471 + | hypothetical protein TERM 1698 2023493 - 2023471 - T 72 -11.3 -3.15366 | opp_overlap 2023471 CGCAAAACGGGAATA GGCGCAACC TATGC GATTGCGCC TGTGTAAACTCATGG RD1_2122 2024363 - 2023515 - | pilus assembly domain-containing protein RD1_2124 2024736 - 2024527 - | hypothetical protein TERM 1699 2024809 - 2024776 - RH 100 -22.5 -4.17316 | AGCCTTTGAAAAGAA GGGGGCCGCAGTCTG CGTG CAGATTGCGGCCCCC CTATGGATATAGACG RD1_2126 2025131 - 2024835 - | hypothetical protein RD1_2125 2024812 - 2024934 + | hypothetical protein RD1_2127 2025481 - 2026308 + | Slt family transglycosylase dxnH 2026988 - 2026362 - | 3-oxoadipate CoA-succinyl transferase, beta subunit RD1_2129 2028053 - 2027001 - | sensory box histidine kinase, putative TERM 1700 2028004 - 2028031 + g 74 -6.2 -4.45399 | gap 1, overlap 2028006 TTCTCCGATGGTGTC CCCGCCGC-ATGC GTC GCATCGCTGCGCG TTTTCGTATTCGTAT dxnG 2028759 - 2028064 - | 3-oxoadipate CoA-succinyl transferase, alpha subunit TERM 1701 2028365 - 2028395 + g 88 -6.8 -4.9792 | opp_overlap 2028381, overlap 2028366 2028367 AAATCCTTGTGCTCC TTGCCGTCGGCA ATCACCG TGCCGACGCCGG TTTTTGTGTAAAATC topA 2031551 - 2028915 - | DNA topoisomerase I TERM 1702 2029025 - 2029049 + g 85 -6.4 -4.7497 | overlap 2029013 TGGGGGCCGCCTTGC GCCGCTTC TTGCCTTTC GAGGCGGC TTTTTCGTCGATCAG TERM 1703 2029481 - 2029517 + g 74 -5.8 -4.53419 | gap 1, overlap 2029485 GGAGATCGACATCCT CCGGCG-GCCAGTCTTT CGGG ATGGACTGGCGCGGTGG TTTCTTGTTGTCCTC TERM 1704 2030822 - 2030871 + g 71 -6.5 -4.2349 | gap 3, overlap 2030823 CAACCGATTTGACGC TCAGATCGC-GGCTGGTGATGGCC TGCAC GGCCAAC-TCGGCCTGCG-TCTGG TTTTCGATGTCGAAG TERM 1705 2031733 - 2031717 - R 91 -7.9 -5.00616 | overlap 2031718 2031726 GCGGGGTTGAAAAAA CCGCACG AAG CGCGCGA TTGACCTGCGCTGCC dprA 2032981 - 2031812 - | DNA processing protein DprA, putative TERM 1706 2032593 - 2032609 + g 78 -2.1 -5.12617 | overlap 2032594 GCGTTGCGCGCTCCA ACGAGGG ACA CCATCGG TTTTTTCAATAATTC TERM 1707 2032789 - 2032826 + g 86 -15 -3.30124 | gap 3, overlap 2032814 2032816 CATATTTCTCTACGC CG-GC-GGCACGCGCTACC TCA GGTAGCGCG-GCCAGCGCG TTCTGCGCAGTGCCG tldD 2034500 - 2033079 - | TldD protein RD1_2134 2034521 - 2034691 + | hypothetical protein ctaC 2034688 - 2035602 + | cytochrome c oxidase, subunit II ctaB 2035664 - 2036608 + | protoheme IX farnesyltransferase RD1_2137 2036612 - 2036776 + | hypothetical protein ctaG 2036776 - 2037360 + | cytochrome C oxidase assembly protein TERM 1708 2037356 - 2037339 - f 90 -8.5 -4.70169 | GGACATCGAAGAAAA TTCAGAC ACAA GTCTGAA CTGACCAACATAAGG ctaE 2037386 - 2038207 + | cytochrome c oxidase subunit III TERM 1709 2038234 - 2038253 + F 100 -12.1 -4.86731 | opp_overlap 2038234 GGGTTTGAAATCAAA GCGCGCG TTTTTT CGCGCGC TTTTCTTTGGGAAAG TERM 1710 2038253 - 2038234 - f 90 -12.1 -4.05788 | opp_overlap 2038234 GGGTTTGAAATCAAA GCGCGCG TTTTTT CGCGCGC TTTTCTTTGGGAAAG TERM 1711 2038414 - 2038398 - g 74 -11.5 -3.51708 | GATCGCTCAAATCAA CAGCCGC ATT GCGGCCG AACCGGTGGCGCTGC surF 2038279 - 2038959 + | SURF1 family protein, putative thrC 2038965 - 2040347 + | threonine synthase mpp 2040350 - 2041612 + | M16 family peptidase putative RD1_2143 2041609 - 2042196 + | acetyltransferase RD1_2144 2042316 - 2043137 + | hypothetical protein TERM 1712 2043953 - 2043967 + G 74 -5.6 -4.56597 | overlap 2043951 TTCGAGCTGATCAGC GGGCAG GGC CTGGCC TTTTTACGCGAAACG RD1_2145 2043182 - 2044618 + | oxidoreductase, putative TERM 1713 2044835 - 2044847 + G 73 -9.1 -3.91716 | TTGCGGTAGATGGCA GCGAC GTG GTCGC TTATTTCACCGATGG RD1_2147 2044702 - 2045166 + | hypothetical protein apt 2045697 - 2045167 - | adenine phosphoribosyltransferase TERM 1714 2045283 - 2045260 - G 84 -11.8 -4.09215 | gap 1 CAGATCAATGATAAA GGAGGTGGAGA TGA TCTCC-CCTCC CAACCGCTCGATAAG TERM 1715 2045444 - 2045454 + g 71 -6.8 -4.183 | overlap 2045428 CTGATGGTTTTGCCC GGCA GCT TGCC TTTCTTGCGGATTGG RD1_2149 2046332 - 2045712 - | LysE family protein RD1_2150 2047222 - 2046350 - | 5'-methylthioadenosine phosphorylase RD1_2151 2047484 - 2049112 + | sulfate transporter family protein RD1_2152 2049816 - 2049211 - | hypothetical protein RD1_2153 2049910 - 2050401 + | acetyltransferase, putative RD1_2154 2050444 - 2051205 + | hypothetical protein TERM 1716 2051553 - 2051533 - g 84 -10.3 -4.14739 | overlap 2051534 CGATGGATGGCAAAA CGCCGGCGG AAT CCGCCGCCA TCGAAGCCTGGGAAG RD1_2155 2051361 - 2051822 + | NUDIX domain-containing protein RD1_2156 2051894 - 2052319 + | hypothetical protein TERM 1717 2052489 - 2052473 - f 90 -5.7 -5.21709 | GGTGAGAGCAAAAAA CCCGTCC GGG GATCGGG ATGCAGATGCTTTGG RD1_2157 2052577 - 2053815 + | aspartate kinase TERM 1718 2055183 - 2055163 - g 85 -8.9 -4.58395 | TCCATCCGCGAAAAA CCCGCACTG ACG CAGGACGGG TTCACAGTGGCGCTT ptsP 2053861 - 2056104 + | phosphoenolpyruvate-protein phosphotransferase, putative TERM 1719 2056884 - 2056896 + G 74 -3.3 -4.76041 | overlap 2056874 ACCGGCCGAAGCCAT CTGGG CTG CGCAG TTTTTCATCGGTATG RD1_2159 2056129 - 2057226 + | hypothetical protein RD1_2160 2057624 - 2057223 - | hypothetical protein TERM 1720 2057321 - 2057311 - G 91 -8.2 -4.84359 | overlap 2057318 TGATCGTGATAAAAA CCGG AAA CCGG ATTGACGCCCATGCC TERM 1721 2057645 - 2057659 + r 73 -9.2 -3.79678 | ACTCAATTAATGTCT GGGCTG GGG CGGCCC TTCTTATCGGAAGTT TERM 1722 2057710 - 2057726 + r 74 -2.1 -5.03715 | opp_overlap 2057710 GGGGCTGACGCAAGA CGTGGTG TGA CAACTCG TTTTTTGGCGATGGT mcp 2060390 - 2057832 - | methyl-accepting chemotaxis protein, putative TERM 1723 2058346 - 2058321 - G 73 -10.4 -3.646 | gap 1, overlap 2058314 2058311 TGCAACGACAGAGAA CCCGCGCCCGG CGTCT CCGG-CACGGG CCGCCTCCACGCCTG TERM 1724 2058484 - 2058499 + g 70 -4.6 -4.44448 | overlap 2058485 2058490 GTTTGCGCAATCCTT TCGCTG GAAA CGGCGG TTTCTTTGGCCTCCT TERM 1725 2059057 - 2059070 + g 70 -3.1 -4.60487 | gap 1 TTCGCCAGTTCGATT TC-GCG TTG CGCCGA TTTTTCCCGCTCATC RD1_2162 2061324 - 2060617 - | ABC transporter, ATP-binding protein, putative TERM 1726 2061093 - 2061110 + g 72 -12.7 -3.05521 | CGACGCCCATATGTG CCAGCGC CTGC GCGCTGG TCTTCCCGATGTCCT RD1_2163 2062054 - 2061314 - | putative ABC transporter, ATP-binding component TERM 1727 2061636 - 2061673 + g 74 -3.3 -4.8083 | gap 1, opp_overlap 2061648, overlap 2061638 GACTTGCGGTGCAGC GCTGCGGA-CAAACCGAT CTG ATCGGCGAGATCCGCAAC TTTTTCATGGTCTTG RD1_2164 2063307 - 2062051 - | branched-chain amino acid ABC transporter, permease protein, putative RD1_2165 2065320 - 2063311 - | branched-chain amino acid ABC transporter, permease protein, putative TERM 1728 2063419 - 2063439 + g 70 -3.9 -4.58395 | overlap 2063415 CGCCAATGTGTTTGA GGGGTTCAG CCA CTCGATCCC TTTTTGCAGCGTGCC RD1_2166 2066690 - 2065347 - | ABC transporter, substrate-binding protein, putative TERM 1729 2066704 - 2066747 + r 73 -10.2 -3.36505 | gap 1, overlap 2066701 2066705 ACGCAATTTATTGCG GCGTGCGGCGGCGCTTGGGTT CGT AGGCCG-GTGCCGTCGCACGG TTCTGAATGACCTGT TERM 1730 2066705 - 2066746 + r 78 -13.7 -2.61582 | gap 1, overlap 2066701 2066704 CGCAATTTATTGCGG CGTGCGGCGGCGCTTGGGTT CGT AGGCCG-GTGCCGTCGCACG GTTCTGAATGACCTG RD1_2167 2066788 - 2066696 - | hypothetical protein TERM 1731 2066843 - 2066831 - R 70 -3.3 -4.7629 | opp_overlap 2066833 GCATTAAGGGAAAAA CAGCG CGA CCCTG TGCCTGTTTTTTAAC RD1_2168 2067343 - 2066909 - | hypothetical protein TERM 1732 2067001 - 2067030 + g 73 -4.9 -4.65895 | gap 1, opp_overlap 2066999 GGTGTTGCGAAAACG TGGCGCGCTGCAGC AGC GAGGCA-TGCGCCA TTTTTACCTCAACCC RD1_2169 2067522 - 2067427 - | hypothetical protein TERM 1733 2067531 - 2067501 - Gg 100 -14.8 -4.21194 | opp_overlap 2067524 2067527, overlap 2067523 2067524 CCGCATCATGGAAAA TGGCGCTGGTCG CACAGAT CAACCAGCGCCA CCGCTGTCGTTTAGA RD1_2170 2067493 - 2067648 + | hypothetical protein gbd 2068790 - 2067645 - | NAD-dependent 4-hydroxybutyrate dehydrogenase RD1_2172 2070165 - 2068795 - | aldehyde dehydrogenase, putative ipuC 2071533 - 2070169 - | gamma-glutamylisopropylamide synthetase, putative TERM 1734 2070918 - 2070928 + g 71 -6.8 -4.18018 | GCCCCGCCTCGGCCT CACC CTT GGTG TTTTCGATCGGCAGG TERM 1735 2071587 - 2071555 - R 80 -8.9 -4.07568 | GCTCTTTCGTGAAAA GGGGGGGCATGGGGG CGA CCACAAAGCCGCCCC GCACGACGTCACGTA RD1_2174 2072627 - 2071596 - | periplasmic mannitol-binding protein, putative TERM 1736 2072563 - 2072600 + g 80 -14.7 -3.07994 | gap 1 CCCTGCGCAATTGCG GGGGCCG-CGAGGGCGGC GGG GGCGGCCACGGCGGCCCC TTGGATAAACTTACG RD1_2175 2074055 - 2072676 - | TRAP dicarboxylate transporter, DctM subunit, putative RD1_2176 2074558 - 2074001 - | hypothetical protein RD1_2177 2075322 - 2074558 - | hypothetical protein RD1_2178 2075437 - 2076309 + | RpiR family transcription regulator ggtA 2077915 - 2076320 - | gamma-glutamyltranspeptidase, putative cobQ 2079477 - 2078032 - | cobyric acid synthase TERM 1737 2078357 - 2078367 + g 81 -8.2 -4.58663 | TGTTTCGCTGTGATC CGGG CGA CCCG TTTTTGCGGCGTCAT TERM 1738 2079408 - 2079384 - G 76 -13.5 -2.98942 | ACGGCGCGACAGATA TGCCGCGACGC TTG GCAGCGCGGCA AAGCCCTGCCACCAA cobO 2080096 - 2079488 - | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 1739 2080271 - 2080258 - H 71 -4.5 -4.63218 | CGGGTCGCAATAAAA GTGCC AAAC AGCAC AACCAAATGGGGAGA RD1_2182 2080294 - 2081103 + | amino acid ABC transporter, periplasmic-binding protein, putative TERM 1740 2081226 - 2081248 + G 93 -7.7 -5.02074 | TGCCGCTCGCGCCGG GCTGGCC AGCGGTCAG GGCCAGC TTTTTTGACGCCTCG TERM 1741 2081366 - 2081396 + G 100 -17.5 -4.11216 | CTGGGGCTTGCCATT GCGCTGGCGCGCG GCGCA CGCGCGCCGGCCC TTTTCCCGCTGCGGA RD1_2183 2081111 - 2081920 + | glutamine ABC transporter, permease protein, putative RD1_2184 2081907 - 2082644 + | amino acid ABC transporter, ATP-binding protein, putative TERM 1742 2083295 - 2083270 - g 71 -8.3 -4.07568 | gap 1, opp_overlap 2083251 2083293, overlap 2083252 2083251 2083250 2083271 GGGTTTTCGGTAAAA CCCT-CGGTGAC TTT GTCACCGCAGCG GGCGGGGCACCGACG dctP 2082753 - 2083742 + | C4-dicarboxylate-binding periplasmic protein, putative TERM 1743 2084040 - 2084063 + G 79 -9.6 -4.21936 | gap 1 CAACCTGCTGCCTGA GCGTGCGCAGA AGG TTTGCGC-CGC TTTTGCGCTTGTCGC TERM 1744 2084076 - 2084088 + G 71 -5.5 -4.29396 | overlap 2084066 CGCTTTTGCGCTTGT CGCGA TTA TCGTG TTTTCATCCATCGTT RD1_2186 2083777 - 2084298 + | TRAP transporter, DctQ-like subunit, putative RD1_2187 2084295 - 2085569 + | TRAP transporter, DctM subunit, putative RD1_2188 2085574 - 2086449 + | carboxyvinyl-carboxyphosphonate phosphorylmutase RD1_2189 2088523 - 2086478 - | oxidoreductase, putative TERM 1745 2086556 - 2086540 - G 79 -12.3 -3.53012 | overlap 2086513 TGTTGCGGGCCGAAA CCGCATC CCC GATGCGG AAAAGCTGAAACGCG TERM 1746 2087175 - 2087163 - G 76 -6.9 -4.54727 | overlap 2087167 GTGTTGAAATGAAAA CGCAC ATC GCGCG CGGCACATTGGGCCA TERM 1747 2087823 - 2087836 + g 73 -5.2 -4.60487 | overlap 2087821 CGCAGGCCCTCTTCG GGCG TGATCC CGCC TTTTTGCACCTCATC TERM 1748 2088137 - 2088125 - G 70 -10.5 -3.54741 | GATCAGTTTGGGAAA GGCGC GAT GCGCC GGTTCGCGGTGGCGC TERM 1749 2088629 - 2088618 - R 72 -3.6 -4.8048 | TTGCCAGATCAAAAA CGCC GGAT AGCG GGGGGATCAGATCAG TERM 1750 2088648 - 2088681 + r 76 -11.7 -3.0806 | opp_overlap 2088644, overlap 2088653 GGATCAGATCAGGGG CGATATCGCCGCACC AAAA GATGCGGCGATGTGG TGTTACAGGTTTCCG TERM 1751 2088653 - 2088676 + r 75 -12.4 -2.91728 | opp_overlap 2088644, overlap 2088648 AGATCAGGGGCGATA TCGCCGCACC AAAA GATGCGGCGA TGTGGTGTTACAGGT RD1_2190 2090255 - 2088684 - | oxidoreductase, putative TERM 1752 2090133 - 2090159 + g 73 -4.4 -4.58283 | gap 1 CAGGTAGCGCCCGCC GGCTTCCAGCG CGACAA CGCT-GATGCC TTTTTGCGCCAGTTC RD1_2191 2090795 - 2090271 - | hypothetical protein glo 2091208 - 2090813 - | lactoylglutathione lyase, putative TERM 1753 2090908 - 2090882 - G 100 -10.1 -5.38054 | GGCCACAAAGAAAAA GCGCGCGATGA CCTCC CCATCGGGCGC AAATTCAACGATCTT RD1_2193 2091609 - 2091316 - | hypothetical protein oxyR 2092756 - 2091815 - | oxidative stress transcription regulator, oxyR, putative katG 2092862 - 2095042 + | catalase-peroxidase TERM 1754 2095085 - 2095045 - T 100 -15.4 -4.07568 | opp_overlap 2095049, overlap 2095049 TCTGGCGGCCTAAAA TCAATGGCACCGGGCGCG TGATG CGTGCCCGGTGCCATTTC TATATTCGATAAGTC TERM 1755 2095049 - 2095081 + T 100 -23.5 -4.21811 | opp_overlap 2095049 2095045 GCGGCCTAAAATCAA TGGCACCGGGCGCGT GAT GCGTGCCCGGTGCCA TTTCTATATTCGATA TERM 1756 2095081 - 2095049 - T 100 -20.6 -3.66908 | opp_overlap 2095049, overlap 2095045 GCGGCCTAAAATCAA TGGCACCGGGCGCG TGATG CGTGCCCGGTGCCA TTTCTATATTCGATA RD1_2196 2095932 - 2095099 - | universal stress family protein, putative panE 2096922 - 2095945 - | 2-dehydropantoate 2-reductase TERM 1757 2096987 - 2097020 + r 100 -16.9 -4.09685 | opp_overlap 2096978 TAACAGGGGCTTAAC TGCGCTGATCAACTT TGCA AAGCTGATCAGCGCA TTTTGCAAAGTACCC RD1_2199 2098561 - 2097038 - | hypothetical protein RD1_2200 2100107 - 2098599 - | integral membrane protein, putative RD1_2201 2100611 - 2100120 - | hypothetical protein TERM 1758 2100583 - 2100569 - G 80 -11.4 -3.74158 | TGAAGTACAGGGAAA GGGCCA TTA TGGCCC CGGCGATCACTCTGT TERM 1759 2100666 - 2100647 - R 100 -12.8 -4.28762 | opp_overlap 2100638 AGAAGGGTAGGAAAA GGGGGCAC CTGC GCGCCCCC TTCCGGCTCGTGTCC RD1_2202 2101672 - 2100695 - | hypothetical protein TERM 1760 2101041 - 2101029 - G 73 -4.8 -4.62069 | CCCGCATTGTAAAAA CCGA GCGCT TCGG AGGGGTTGTTCACGG TERM 1761 2101545 - 2101570 + g 70 -3.1 -4.62471 | GCACCACCACCCTGA CCGGCCATGAT GACC ATCTCGACCGG TTTTTGCGGCTTCCA TERM 1762 2102790 - 2102808 + G 95 -2.2 -5.61881 | overlap 2102791 CACGCTACAACGCAA GGGGGCGC AGG GCGTACCG TTTTTCTTTTTGCGC TERM 1763 2102962 - 2102979 + G 81 -7.7 -4.59773 | gap 1 GCGCAAATGGTCGAA CTGC-CGG ATG CCGGGCAG TTTTTCACCATCAGC RD1_2203 2101849 - 2103255 + | transcriptional regulator, putative TERM 1764 2103306 - 2103281 - T 100 -14.7 -5.60993 | opp_overlap 2103281 CTGGGTACAAAAAAA GCCCCGGCG ATGTCGCG CGCCGGGGC TTTTTCAGCGGTCAA TERM 1765 2103281 - 2103306 + T 100 -14.7 -4.58395 | gap 1, opp_overlap 2103281 CTGGGTACAAAAAAA GCCCCGGCGATG TCG CG-CGCCGGGGC TTTTTCAGCGGTCAA icd 2105552 - 2103330 - | isocitrate dehydrogenase, NADP-dependent TERM 1766 2103912 - 2103936 + g 71 -7.2 -4.14392 | gap 1, opp_overlap 2103903, overlap 2103914 2103916 CAGATAGTCGCGCAG CA-CGTTGCCG GTGA CGGCAATGCTG TTTTCGCCCTTGGCA RD1_2207 2109968 - 2108829 - | hypothetical protein TERM 1767 2110255 - 2110240 - g 71 -5.4 -4.37092 | gap 1, overlap 2110241 ATTTCGCGGATAAAA GCG-GCA TGC TGCGCGC CGTCGCCATGGAAGG TERM 1768 2110504 - 2110485 - g 73 -4.8 -4.61482 | overlap 2110487 GTCGTCAAAAAAGAA GTGGCGCG CTGC CGCGGCGC GGATGAGGTGACGCC RD1_2208 2110056 - 2110676 + | TetR family transcriptional regulator RD1_2209 2110796 - 2111575 + | myo-inositol-1-monophosphotase RD1_2210 2112328 - 2111702 - | hypothetical protein TERM 1769 2111920 - 2111899 - G 71 -8.7 -3.71649 | gap 1, overlap 2111902 CCGCGAAATCCCAAA GAG-GGCGCA GAT CGCGCCACTC CGGGGCGTCGAGCAG RD1_2211 2113091 - 2112318 - | sugar ABC transporter, ATP-binding protein, putative rbcS 2114152 - 2113091 - | ribose ABC transporter permease TERM 1770 2114201 - 2114230 + r 89 -13.5 -3.50393 | opp_overlap 2114199 2114203, overlap 2114203 2114229 TGGTTTTGAACAACC AAGGGGGGCGGGT TCAG ACGCGCCCCCCTC TTATCTCAGGTAAGA TERM 1771 2114228 - 2114203 - R 100 -16.1 -3.53444 | opp_overlap 2114201 2114203, overlap 2114199 GTTTTGAACAACCAA GGGGGGCGGGT TCAG ACGCGCCCCCC TCTTATCTCAGGTAA TERM 1772 2114203 - 2114228 + r 100 -16.1 -3.32698 | opp_overlap 2114203 2114199, overlap 2114201 GTTTTGAACAACCAA GGGGGGCGGGT TCAG ACGCGCCCCCC TCTTATCTCAGGTAA RD1_2213 2115279 - 2114263 - | sugar ABC transporter protein, putative frcR 2115428 - 2116636 + | ROK family transcription regulator TERM 1773 2116965 - 2116992 + G 77 -7.7 -4.30719 | gap 1, overlap 2116968 GAGCACTGTGCCTGT CGCCGCTGCCGG AAATG TTGGCAGC-GCG TTTCTTGTGGCGCAA RD1_2215 2116912 - 2117511 + | hypothetical protein TERM 1774 2117569 - 2117542 - T 100 -14.2 -5.14563 | CGTGTGACGAAAAAA GCGCAGACAATC GAAC GTTTGTCTGCGC CTTCCGGAGTTGTGA RD1_2216 2117962 - 2117615 - | hypothetical protein RD1_2217 2118094 - 2118237 + | hypothetical protein RD1_2218 2121842 - 2119485 - | sensory box/GGDEF family protein, putative TERM 1775 2121012 - 2121022 + g 71 -5.4 -4.36914 | CGTATCCACCTTCAG GATG TCC CATC TTTTATGGCCCACCA TERM 1776 2121931 - 2121953 + rH 74 -10.6 -3.56142 | overlap 2121927 TCAAATCGGTCGCAT TTGAGCGCGG GTG TCGTGCTCAA TTCCTTGTTGGTAAC RD1_2220 2122443 - 2122057 - | hypothetical protein RD1_2219 2121976 - 2122503 + | hypothetical protein RD1_2221 2123558 - 2122596 - | oligopeptide ABC transporter, ATP-binding subunit RD1_2222 2124532 - 2123558 - | peptide ABC transporter, ATP-binding protein, putative TERM 1777 2124099 - 2124140 + g 73 -10.7 -3.60661 | gap 1, overlap 2124095 2124137 TCGATGCGTTCGGCG GCGCCGGGGATGCCGACCTC TTC GAGGGCCGCAACCGCG-CGC TTGTGTGCTTCGCTG RD1_2223 2125476 - 2124532 - | peptide ABC transporter, permease protein, putative RD1_2224 2126456 - 2125476 - | peptide ABC transporter, permease protein, putative RD1_2225 2128072 - 2126507 - | solute-binding family 5 protein TERM 1778 2128116 - 2128158 + r 74 -8.5 -3.97042 | gap 2, opp_overlap 2128122 2128124, overlap 2128123 GCCTGTGCTGACGCA TGAAAACAGCGGTGCGCCC AAGGGCA GGGCGCACCGC-GTC-TCG TTTAGTTCATGGTGA TERM 1779 2128153 - 2128122 - R 100 -15.2 -4.2828 | gap 1, opp_overlap 2128116 2128123, overlap 2128124 GCTGACGCATGAAAA CAGCGGTGCGCCC AAGGGCA GGGCGCACCGC-G TCTCGTTTAGTTCAT TERM 1780 2128123 - 2128153 + r 91 -15.4 -3.068 | opp_overlap 2128122 2128124, overlap 2128116 CTGACGCATGAAAAC AGCGGTGCGCCC AAGGGCA GGGCGCACCGCG TCTCGTTTAGTTCAT TERM 1781 2128152 - 2128124 - R 100 -18.9 -3.745 | opp_overlap 2128123 2128116, overlap 2128122 TGACGCATGAAAACA GCGGTGCGCCC AAGGGCA GGGCGCACCGC GTCTCGTTTAGTTCA RD1_2226 2129740 - 2128160 - | extracellular solute-binding protein, putative RD1_2228 2130698 - 2131927 + | CP4-like integrase, putative TERM 1782 2132119 - 2132100 - g 91 -7.8 -4.72986 | GACTTCGACGAAAAA CGCTTGGC ACTG GTCAAGCG CGTACAGGATTATCT RD1_2229 2131953 - 2132867 + | hypothetical protein TERM 1783 2132864 - 2132882 + F 90 -11.8 -3.96542 | opp_overlap 2132862 GAAGCCAAACAACTC CTAATCGG TTT CCGATTAG TTTGGCTTTATTTAA RD1_2231 2133116 - 2133631 + | hypothetical protein TERM 1784 2134145 - 2134160 + G 74 -3.9 -4.79223 | opp_overlap 2134136 2134145 ATTAGAGCGACGTAA CGCGG CAGTTA TCGCG TTTTTCATGATCTCC RD1_2232 2133684 - 2134709 + | phage integrase family protein TERM 1785 2136027 - 2136017 - g 70 -4.6 -4.45168 | overlap 2136018 GCTTCAAAAGACAAA GGCC GAC AGCC CCAAAAGCTGGACCG RD1_2233 2134764 - 2136206 + | type I restriction enzyme methyltransferase subunit, putative TERM 1786 2137141 - 2137159 + G 78 -3 -5.03145 | opp_overlap 2137135, overlap 2137135 AAGTAACATGGCTAG GGCAAATC TCA GCCTTGCC TTTTTTCGGGAGTTC RD1_2234 2136203 - 2137342 + | type I restriction enzyme specificity subunit, putative TERM 1787 2138149 - 2138137 - g 71 -9.1 -3.76884 | opp_overlap 2138148 AGAGATCAGCAAGAA GGGCA AGA TGCCC CGCAATGCGAGTGTC RD1_2235 2137358 - 2139706 + | type I restriction enzyme subunit, putative RD1_2236 2140134 - 2140033 - | hypothetical protein TERM 1788 2140215 - 2140252 + H 91 -12.1 -4.18018 | gap 1, opp_overlap 2140214 2140215 AGCTAGGTCAAATAG CCCGGGCATTTGAAGAAC GGA GTTCATTGA-TGCCCGGG TTTTACCTACCCACC TERM 1789 2141441 - 2141425 - g 78 -13.7 -3.1364 | CATGGAAGTATTCAA GCGCGAG AGC CTCGCGC GATACACCCACCTCG RD1_2237 2140244 - 2141614 + | hypothetical protein RD1_2238 2142031 - 2141873 - | hypothetical protein RD1_2239 2142056 - 2143024 + | hypothetical protein RD1_2240 2143207 - 2143899 + | ABC transporter, ATP-binding protein, putative TERM 1790 2145522 - 2145497 - g 76 -9 -4.11692 | gap 1 GACCTACCGTGAAAA CTGGCCGCTGC TGAGT GC-GCAGCCAG AGGTGTGGGATTTGC RD1_2241 2143896 - 2146268 + | permease, putative TERM 1791 2146549 - 2146531 - g 83 -4.4 -5.06414 | overlap 2146532 GCGCCCGAAGAAAAA CCCGGCTG GGC CAGCCCGC AACTGTGGATGGGCC RD1_2242 2146258 - 2147307 + | hypothetical protein acdA 2147387 - 2148535 + | acyl-CoA dehydrogenase cheB 2148669 - 2149796 + | chemotaxis response regulator protein-glutamate methylesterase cheD 2149793 - 2150308 + | chemotaxis protein CheD, putative TERM 1792 2150820 - 2150800 - T 71 -10.4 -3.26779 | opp_overlap 2150800, overlap 2150798 2150796 CTGCCAAAATATAGA GGCCTCAC GAATT GCGAGGCC TTTTCCAATTTACTG TERM 1793 2150800 - 2150820 + T 84 -8.9 -4.25074 | opp_overlap 2150798 2150796 2150800 CTGCCAAAATATAGA GGCCTCACG AAT TGCGAGGCC TTTTCCAATTTACTG RD1_2246 2152064 - 2151207 - | integrase catalytic subunit TERM 1794 2151263 - 2151308 + g 70 -10.4 -3.51563 | gap 1, overlap 2151306 TGTCCGTATGGGCAA GCGCGTCGGGTGC-GGAGC CCTCAAATT GCTCAAGCGTCCGGCGCGC TTCTGTAGGCGTTTT TERM 1795 2151306 - 2151319 + g 73 -4.5 -4.63218 | overlap 2151263 CTCAAGCGTCCGGCG CGCTT CTGT AGGCG TTTTGTTCCCGAGCG RD1_2249 2153933 - 2153007 - | metallo-beta-lactamase family protein, putative RD1_2250 2153976 - 2155301 + | sensor histidine kinase, putative TERM 1796 2155871 - 2155881 + G 72 -2.4 -4.82661 | overlap 2155861 ACCTCGTCTGCCAGG GGGC GGA GCCG TTATTTTTTCTTGAT RD1_2252 2155570 - 2156616 + | phosphoribosylaminoimidazole synthetase TERM 1797 2157182 - 2157194 + G 73 -9.1 -3.86346 | ATTTGTCGGTGGTGA CACGG CTC CCGTG TTTCTCGACGGGTGA RD1_2253 2156613 - 2157209 + | phosphoribosylglycinamide formyltransferase putative rnd 2157298 - 2158461 + | ribonuclease D RD1_2255 2158976 - 2158470 - | putative lipoprotein TERM 1798 2159113 - 2159099 - H 77 -7.8 -4.34402 | overlap 2159108 CCTGTGACATCAAAA GACAGG AGA CCCGTC ATGGCACAGGCTGCA RD1_2256 2159114 - 2159524 + | hypothetical protein RD1_2257 2160169 - 2159531 - | hypothetical protein mtbC 2160909 - 2160211 - | dimethylamine corrinoid protein, putative TERM 1799 2161090 - 2161129 + r 71 -11.3 -2.90455 | gap 1, opp_overlap 2161090, overlap 2161089 2161116 GGAATACGGGAATTA GCCGGCGCGTC-TGCTTC TTCGC GTTGCGCGGCGCGCCGGC GTGTTTTCCTTGTCG RD1_2260 2162109 - 2161087 - | methionine synthase I TERM 1800 2161116 - 2161132 + g 74 -5.7 -4.50058 | opp_overlap 2161090, overlap 2161090 2161089 TGCTTCTTCGCGTTG CGCGGCG CGC CGGCGTG TTTTCCTTGTCGGTC TERM 1801 2161183 - 2161168 - G 71 -5.4 -4.30978 | gap 1, overlap 2161169 CGCAACGGAGGAAAA GGCACCG AGC CGGT-CC ACGATTTCCTCCAAC RD1_2261 2162596 - 2162282 - | hypothetical protein purC 2162753 - 2163514 + | phosphoribosylaminoimidazole-succinocarboxamide synthase RD1_2263 2163527 - 2163787 + | phosphoribosylformylglycinamidine synthase, PurS protein, putative RD1_2264 2163787 - 2164455 + | phosphoribosylformylglycinamidine synthase I TERM 1802 2164536 - 2164517 - f 73 -5.7 -4.41494 | GAGCTTCAATCAAAA GAGCCGA ACCCGA TCAGCTC ATGGCGGGTGCGCAT TERM 1803 2164921 - 2164937 + G 71 -7.9 -4.11216 | TTTCGTCGATGCGAT CCGTGCC AGC GGCACCG TTTTCACCGTGGCGG TERM 1804 2165428 - 2165438 + G 71 -8.2 -4.07687 | overlap 2165399 CCGGCGCACGGCCTT GCGC ATG GCGC TTTTCCAGCGGGAAT TERM 1805 2166043 - 2166065 + G 76 -6.3 -4.61527 | ACGTGACAATGGGCC GGGTATTGA AGACC TCGATGCCC TTTTTGAGCCATTTT dctB 2164550 - 2166253 + | C4-dicarboxylate transport sensor protein dctB dctD 2166257 - 2167591 + | C4-dicarboxylate transport transcriptional regulatory protein DctD TERM 1806 2167921 - 2167910 - f 77 -7.2 -4.30719 | GTGTCGGAGAAGAAA CGCG ATGA CGCG CGCAAATGCATTGAG TERM 1807 2168180 - 2168165 - g 78 -6.8 -4.68655 | overlap 2168161 2168166 GAATCCGAAAACAAA CGCCAG CTTG CTGGCA ACATCTATCTTGCAA rne 2168060 - 2170819 + | ribonuclease E, putative TERM 1808 2170848 - 2170868 + T 100 -11.8 -4.80882 | opp_overlap 2170848 CCAAAAACCCAAAAA GCGCGTCC AAATC GGGCGCGC TTTTTCATGTCACCT TERM 1809 2170868 - 2170848 - T 100 -10.3 -4.92239 | opp_overlap 2170848 CCAAAAACCCAAAAA GCGCGTCCA AAT CGGGCGCGC TTTTTCATGTCACCT RD1_2268 2171113 - 2170883 - | hypothetical protein TERM 1810 2171455 - 2171465 + G 80 -3.2 -5.14563 | GGTTTCACGGCCTCG GCAT TCG GTGC TTTTTTCCTGCAAAA ccdA 2171206 - 2171958 + | cytochrome c-type biogenesis protein CcdA fda 2172092 - 2172964 + | fructose-1,6-bisphosphate aldolase TERM 1811 2172969 - 2172981 + T 70 -9.1 -3.66803 | CATCCATCTGAGCGC GCGCA AGC TGCGC TTTCAGGTCTTCCAG RD1_2271 2173191 - 2172949 - | hypothetical protein TERM 1812 2173012 - 2173041 + g 88 -13.6 -3.61654 | gap 1, opp_overlap 2173003 CACAAAGACCCGGAT CGCGGAGGCCAGC CCTGT GCTGGTC-CCGCG TTTCACATCAATGTC RD1_2272 2173364 - 2173188 - | hypothetical protein fumC 2174752 - 2173361 - | fumarate hydratase RD1_2274 2174807 - 2174935 + | hypothetical protein RD1_2275 2174932 - 2175486 + | hypothetical protein RD1_2277 2175983 - 2175576 - | hypothetical protein RD1_2278 2177322 - 2176075 - | chromate transporter TERM 1813 2177199 - 2177186 - G 74 -6.7 -4.37092 | opp_overlap 2177185 AGCGCGCGCAGAAAA CTGTC TTCG GACAG CCATTTTTTCTCTTC RD1_2279 2177874 - 2177446 - | hypothetical protein TERM 1814 2177936 - 2177948 + r 72 -4.1 -4.6971 | opp_overlap 2177930 2177936, overlap 2177930 AAGGGTAAACAAAAG CAACT TAT GGTTG TTTTGTTCAGATTTG RD1_2281 2178790 - 2178437 - | hypothetical protein RD1_2282 2179360 - 2178851 - | hypothetical protein TERM 1815 2179176 - 2179166 - G 74 -3.2 -4.7497 | opp_overlap 2179174 GCGAGGTACGAAAAA GCCA TCC TGAC CTTTGACGGTCTCCG RD1_2283 2180183 - 2179425 - | GntR family transcriptional regulator RD1_2284 2180255 - 2181043 + | hypothetical protein RD1_2286 2181047 - 2181754 + | hypothetical protein RD1_2287 2181751 - 2182260 + | DinB family protein TERM 1816 2183340 - 2183368 + G 83 -4.6 -5.0925 | overlap 2183318 2183345 GCGCGCGCGATGCGA CCGTGCAG-GCCGG TTT CTGGCACTG-ATGG TTTTTGCTTTTGCCG dmdA 2182262 - 2183365 + | putative dimethyl sulfoniopropionate demethylase RD1_2290 2183446 - 2184438 + | oxidoreductase, putative TERM 1817 2184536 - 2184516 - T 100 -12.5 -4.74132 | opp_overlap 2184516 ACATCCGATGAAAAA GCGCGTCAC GGT GTGGCGCGC TTTTTACGTGTGCAG TERM 1818 2184516 - 2184536 + T 100 -14.7 -4.70659 | opp_overlap 2184516 ACATCCGATGAAAAA GCGCGTCAC GGT GTGGCGCGC TTTTTACGTGTGCAG opuD 2186397 - 2184559 - | glycine betaine transporter OpuD, putative TERM 1819 2186480 - 2186492 + H 86 -6.9 -5.09426 | AATGAGTCCATTTTT CGCGC CAT GCGTG TTTTTTGGACTTAAA RD1_2292 2186716 - 2188389 + | glycine betaine transporter, putative TERM 1820 2188413 - 2188436 + F 100 -13.9 -5.29782 | opp_overlap 2188413 CGTCATTTTAAGAAA GGGCCATGG TTCACC CCATGGCCC TTTTTTATGGATGTG TERM 1821 2188436 - 2188413 - f 100 -13.9 -4.1822 | opp_overlap 2188413 CGTCATTTTAAGAAA GGGCCATGG TTCACC CCATGGCCC TTTTTTATGGATGTG TERM 1822 2188561 - 2188583 + G 84 -9 -4.56597 | overlap 2188562 TTCCTGCGTTTCAGG TGCCCGCCCT GCA GGGGCAGGCG TTTTTCGAAAACGCG RD1_2293 2188512 - 2189735 + | aminotransferase, putative TERM 1823 2190541 - 2190525 - g 80 -10.1 -4.07568 | overlap 2190526 GGGGCTGTCGGAAAA CCTCGCC CTT GGCGAGA TCAGCCCGCATCAAT phrB 2189803 - 2191221 + | deoxyribodipyrimidine photolyase, putative cfa 2191301 - 2192509 + | cyclopropane-fatty-acyl-phospholipid synthase trgA 2192635 - 2193075 + | tellurite resistance protein TrgA trgB 2193092 - 2194195 + | tellurite resistance protein TrgB cysB 2194307 - 2195344 + | cysteine synthase A TERM 1824 2195336 - 2195359 + F 71 -6 -4.26344 | overlap 2195339 CCGGGCGTGTTTGAA GACGTATGAG GGCG CTCATGCCTC TTTTGCTGGCGATGT TERM 1825 2196050 - 2196066 + G 71 -5.8 -4.42721 | GCTTTGGTGGTCGAG GCTCCG GCGTA TGGAGC TTTCTTGTGTCCTTG RD1_2300 2195341 - 2197677 + | mechanosensitive ion channel protein, putative RD1_2302 2198546 - 2198082 - | cytochrome c family protein, putative RD1_2303 2201059 - 2198543 - | putative copper-translocating P-type ATPase TERM 1826 2199312 - 2199351 + g 86 -13.4 -3.53224 | CCGATCTCCACGGGC GTGCCACCGGCGCGGGCG CTGA CGCCCATGCCGGTGAGGC TTTGGAAGCCGGATA TERM 1827 2200122 - 2200140 + g 71 -8.1 -4.07568 | gap 1 TCCAGCGTTTCGCTG CCGCGGCG GACG CGC-GCGG TTTTCGGGGCGAGCC hmrR 2201200 - 2201601 + | HTH-type transcriptional regulator hmrR, putative RD1_2305 2201710 - 2201865 + | hypothetical protein RD1_2306 2201862 - 2203250 + | multicopper oxidase, putative RD1_2307 2203289 - 2203750 + | hypothetical protein RD1_2308 2205004 - 2203904 - | oxidoreductase, putative TERM 1828 2204486 - 2204457 - G 79 -8.6 -4.44448 | opp_overlap 2204456 ATCAGGTCAAAGAAA TGGCAGCACTTT TCCACG AATGTGCCGCCA GTGTTGACATTGAAC TERM 1829 2204860 - 2204847 - G 81 -4.5 -4.90455 | gap 1, overlap 2204848 ACAGACGGATAAAAA GCGGCC TGT GGC-GC GATGGCGTGTGCGGC RD1_2309 2205693 - 2205016 - | putative transcriptional regulator ssuD 2205822 - 2206976 + | methanesulfonate sulfonatase RD1_2311 2206976 - 2207866 + | oxidoreductase, putative TERM 1830 2208213 - 2208226 + G 74 -3.7 -4.8269 | overlap 2208214 TGCCGCCCTCAGCGA CCGGG ACGT CCCGA TTTTTGATGCTTGTC TERM 1831 2208302 - 2208346 + G 93 -7.9 -5.0133 | gap 3, overlap 2208306 2208308 2208319 ATCATTCGATCATGG TCGGCATGGTGCGCCACG-CGG CGTT CCGGCATGGCGCGCC--GCTGA TTTTTTCGCAAGGTG TERM 1832 2208319 - 2208343 + G 72 -11.3 -3.37655 | overlap 2208308 2208306 2208302 GGCATGGTGCGCCAC GCGGCGTTCCG GCA TGGCGCGCCGC TGATTTTTTCGCAAG ntaB 2207896 - 2208405 + | nitrilotriacetate monooxygenase component B TERM 1833 2208426 - 2208408 - f 83 -8.1 -4.4715 | gap 1, overlap 2208410 2208419 GGCGAACGTATAAAA CG-GCGGG GAAA CCCGCGCG CCGCCGGCAGAATGT TERM 1834 2208744 - 2208762 + G 81 -4.5 -4.96106 | gap 1 TTTGCCCAAGCTGTT GGGCAGCC TGCT GGC-GCTC TTTTTGCTGTTTGTC RD1_2313 2208466 - 2209056 + | C4-dicarboxylate transport system, permease small protein, putative dctM 2209057 - 2210346 + | TRAP-type transporter, DctM subunit, putative TERM 1835 2210510 - 2210485 - g 71 -5.5 -4.43309 | gap 1, opp_overlap 2210497, overlap 2210492 2210494 2210497 CAATTCCAACGAAAA CGACGAAGAC TACGACG GTCT-CGTCG TGTTCAAGAACTACG RD1_2315 2210372 - 2211430 + | TRAP-type C4-dicarboxylate transport system protein, putative TERM 1836 2211458 - 2211439 - T 80 -10.6 -3.80461 | opp_overlap 2211447 GAATTGACCACGAAA GGGCGGCC TCCG GGTCGCCC CGATCATCTGAACGG RD1_2316 2211932 - 2211462 - | hypothetical protein bglA 2214622 - 2213309 - | beta-glucosidase A TERM 1837 2213551 - 2213603 + g 77 -7.8 -4.34402 | gap 2, opp_overlap 2213584 2213585, overlap 2213551 2213554 GCGTGGTTGTGTCAT CGGCATTGGC-CA-TGCCGTTTTCCG TTA CGTAAAGCGGCAGTGCGCCGGTGTAG TTTTGCTGTAACCAC TERM 1838 2213551 - 2213567 + g 75 -8 -4.28774 | overlap 2213551 2213554 GCGTGGTTGTGTCAT CGGCAT TGGCC ATGCCG TTTTCCGTTACGTAA TERM 1839 2213893 - 2213879 - G 73 -4.2 -4.72272 | overlap 2213890 2213891 CCCGCCCACGAAAAA GCGGTT GTA AATCGC CTCATAGCGGCGCGC TERM 1840 2214412 - 2214389 - G 80 -10.3 -4.08216 | CCAGCTGGTGGAAAA GCGATAGGC ATCAAG GCCCATCGC CTGCATCAGATCGAG RD1_2320 2215664 - 2214636 - | transcriptional regulator, putative RD1_2321 2215677 - 2215769 + | hypothetical protein TERM 1841 2215937 - 2215956 + G 95 -12.8 -4.15044 | ATGGCACGGTTTTAC GCCGGCGC AGCG GCGCTGGC TTTATTCGCAGGGGC TERM 1842 2215972 - 2215995 + G 89 -11 -4.14739 | overlap 2215962 2215964 TTTATTCGCAGGGGC GGCTTATGCC GACG GGCATCAGCC TTTTGCCGTGGGTGA TERM 1843 2216157 - 2216145 - g 73 -10.5 -3.57144 | opp_overlap 2216140 TTTCCTATTTCGAAA GCGCC ACG GGCGC GACCGTCAATTATTC aglE 2215922 - 2217274 + | alpha-glucoside transporter, periplasmic binding protein AglE TERM 1844 2217322 - 2217290 - f 85 -15.5 -2.62616 | opp_overlap 2217285, overlap 2217306 GTACCGCCTAGATCA CTTCGCCCGGCAGGA ACA CCCTGCCGGGCGGAT CACATGTCATCCTGG aglF 2217350 - 2218330 + | alpha-glucoside transporter, permease protein AglF aglA 2219498 - 2221150 + | alpha-glucosidase TERM 1845 2222020 - 2222001 - g 71 -6.4 -4.21194 | gap 1, overlap 2222002 2222004 CCCGACCACTGAAAA CGA-CCGCG GTG CGCGGGTCA ACGTGGGCATTCGTC TERM 1846 2222230 - 2222213 - g 70 -3.3 -4.61873 | GGTCACAAATGAAAA TGACGGC TCAT GCGGCCA AGGTGCACCTGTTCC aglK 2221177 - 2222274 + | alpha-glucoside transporter, ATP-binding protein AglK RD1_2328 2222427 - 2222822 + | hypothetical protein TERM 1847 2222864 - 2222854 - f 100 -8.2 -5.32608 | AAAAAACTGAAAAAA CGGC AGC GCCG GGCCGGGAGACTGTT TERM 1848 2224417 - 2224443 + G 80 -10 -4.00882 | overlap 2224418 GGGGTCCTTGGCCGG ACCGTCGCTGCG TGA CGCACCGGCGGA TTTCCTGTTCTATTC TERM 1849 2224418 - 2224442 + G 76 -13.5 -2.99445 | overlap 2224417 GGGTCCTTGGCCGGA CCGTCGCTGCG TGA CGCACCGGCGG ATTTCCTGTTCTATT RD1_2329 2222981 - 2224795 + | outer membrane protein, putative TERM 1850 2227658 - 2227619 - g 79 -12.8 -3.55444 | opp_overlap 2227642 GCGCGATCCCTGAAA TCCGTCACATCGGCGCAC CGCA GCGCGCCGCTGTGACCCA GGCCCATGCGGGCGT RD1_2330 2224792 - 2228409 + | hypothetical protein ntaB 2228924 - 2228403 - | nitrilotriacetate monooxygenase component B TERM 1851 2229075 - 2229036 - R 76 -12.8 -2.75074 | overlap 2229019 2229018 2229033 GTCAGGGCAAGAGGA TCCTGCGCGCCAGACAGT ATCC ACGGCCTGCCGCGCAGCA ATTCGGGGTCGTGAC acsA 2231090 - 2229120 - | acetyl-coenzyme A synthetase TERM 1852 2231754 - 2231741 - g 74 -3.7 -4.84359 | opp_overlap 2231741 TCATCCGGACAAAAA CCGGG TGAT CACGG TGCTTGAGTTGCCCT RD1_2333 2231460 - 2232476 + | TRAP dicarboxylate transporter, DctP subunit, putative TERM 1853 2232470 - 2232480 + F 70 -6.8 -4.08767 | overlap 2232449 CGAAGCCAAGGGCGG CAGC TAA GCTG TTTTGGGCCGCTCCC TERM 1854 2232486 - 2232508 + F 100 -18.4 -5.2112 | AGCTAAGCTGTTTTG GGCCGCTCCC CCC GGGGGCGGCC TTTTTTCATGATGTT RD1_2334 2232547 - 2233176 + | TRAP dicarboxylate transporter, DctQ subunit, putative RD1_2335 2233176 - 2234576 + | TRAP dicarboxylate transporter, DctM subunit, putative pobA 2235851 - 2234676 - | 4-hydroxybenzoate 3-monooxygenase RD1_2337 2235978 - 2237336 + | aminotransferase RD1_2338 2238092 - 2237337 - | oxidoreductase, putative RD1_2339 2238379 - 2238483 + | hypothetical protein RD1_2340 2238517 - 2239008 + | acetyltransferase, putative TERM 1855 2239052 - 2239110 + T 73 -5.5 -4.66163 | gap 2, opp_overlap 2239041 2239050 2239053, overlap 2239093 GAAATACCTGAAACA TCGCGTATCACGTAACGC-GT-TGAAATC TTT GATTTCAGGCAGCGTTATGTGAAGCAAGA TTTTTGCATGACGCT TERM 1856 2239298 - 2239313 + T 78 -6.8 -4.56775 | CTGCCAAGGGGTGCT GCGTCT AGGG GGACGC TTTTTGGACAACGGT RD1_2341 2240342 - 2239302 - | glycosyltransferase, putative RD1_2342 2241871 - 2240339 - | ABC transporter, permease protein, putative TERM 1857 2240542 - 2240559 + g 71 -8.4 -4.07568 | opp_overlap 2240542 TTGTGACGGCCAGAA TGGCGG CAGGCA CCGCCA TTTTCGCCGCAGCAA TERM 1858 2240663 - 2240650 - G 70 -3.7 -4.59109 | opp_overlap 2240653 CATAGCTGCGAAAAA GGTCG CTCA CGGCC CGAGGCGTTTGCCGC RD1_2343 2242618 - 2241872 - | ABC transporter, ATP-binding protein, putative RD1_2344 2243563 - 2242625 - | hypothetical protein TERM 1859 2243577 - 2243565 - R 70 -9.1 -3.64703 | GCGGTCGCACCCAAA GCAGC CCC GCTGC TCTGAAGAAAAGCGC RD1_2345 2244519 - 2243617 - | hypothetical protein TERM 1860 2243802 - 2243775 - G 72 -11.2 -3.39018 | gap 1, overlap 2243773 CGATCAGGGGAAACA GGGCGGCG-GCGG CAC CCTCGCGCCACCC CAAGCCGCCCACAGA TERM 1861 2244024 - 2243998 - G 73 -9.4 -3.87815 | CGTCAGCCTCATAAA GCGCGCGG ATGCAGATGTG CCGCGCGC AAAAACCACCGCGCC RD1_2346 2246132 - 2244519 - | hypothetical protein RD1_2347 2246716 - 2246132 - | hypothetical protein RD1_2348 2247042 - 2246938 - | hypothetical protein RD1_2349 2246989 - 2247108 + | hypothetical protein TERM 1862 2247209 - 2247187 - g 72 -11.2 -3.29144 | CCATCTTTGGCACAA CCGCTCTGGC CGA GCCAGCACGG TTCGAACTGGACCCC RD1_2350 2247138 - 2247722 + | YceI-like family protein TERM 1863 2247892 - 2247857 - g 71 -8.1 -4.08767 | overlap 2247858 TGCACTGTTTGAAAA CGGCGTGGATGTCGC GCGGGG GCGCCAGCCGCGCCA TGGGCTGGCGTTGCG RD1_2351 2247801 - 2247950 + | hypothetical protein RD1_2352 2250350 - 2248077 - | hypothetical protein TERM 1864 2248171 - 2248150 - G 79 -8.7 -4.27316 | GTTTGCAATGTAAAA TCACCGTTC AGGG GATCGGTGA ACAAAGGGTCGATGC TERM 1865 2248797 - 2248787 - G 93 -6.8 -5.27335 | opp_overlap 2248786, overlap 2248781 TGCCGTAAACAAAAA CGTG CTG CACG CTATTGGCGACGGTG RD1_2353 2250779 - 2251654 + | hypothetical protein TERM 1866 2251706 - 2251680 - T 100 -16.6 -3.67517 | opp_overlap 2251668 2251667 2251682 GATCAAGACGTGAAA GATGCGCTCTGC CGG GCAGGGCGCATC CTGTGCGTGCAGTGG TERM 1867 2251682 - 2251704 + T 85 -15.6 -2.64735 | opp_overlap 2251680, overlap 2251668 2251667 TCAAGACGTGAAAGA TGCGCTCTGC CGG GCAGGGCGCA TCCTGTGCGTGCAGT grxC 2251996 - 2251724 - | glutaredoxin 3 TERM 1868 2251837 - 2251863 + g 74 -10.9 -3.53091 | gap 1, overlap 2251842 AGATTTGCGGCACGG TGGTGCGCCCGC CGGC GCGGGCG-ATCA TTTCGCCGCGCCGCT RD1_2355 2252548 - 2252048 - | hypothetical protein TERM 1869 2252566 - 2252577 + H 73 -5.8 -4.46112 | TGTGTTTCCTTTCTT GACC GAGT GGTC TTTATTTGGGTAAAG RD1_2356 2252686 - 2253282 + | TetR family transcriptional regulator RD1_2357 2253564 - 2254049 + | hypothetical protein RD1_2358 2255699 - 2254077 - | mechanosensitive channel protein, putative RD1_2359 2256305 - 2255814 - | MarR family transcriptional regulator van 2257612 - 2256542 - | vanillate O-demethylase oxygenase, putative TERM 1870 2257023 - 2257011 - G 83 -4.8 -5.01732 | AAGGCCTTGAAAAAA CCGA TCGGC TCGG AATTGCGTATCCAGC TERM 1871 2257823 - 2257840 + r 78 -6.9 -4.58395 | CTATTCGGCAATATC CTCGGCC CAAA GGTCGGG TTTTTCGCGGATGAA cdd 2258251 - 2257808 - | cytosine deaminase RD1_2363 2259150 - 2258257 - | hypothetical protein TERM 1872 2258821 - 2258831 + g 71 -8.2 -4.08945 | overlap 2258820 AAACCATTCCCGCTG CGCG CCG CGCG TTTTGACCGGGTCCT RD1_2364 2260240 - 2259155 - | spermidine/putrescine ABC transporter, ATP-binding protein, putative potC 2261037 - 2260237 - | spermidine/putrescine transport system, permease protein potH 2261897 - 2261034 - | putrescine ABC transporter, permease protein TERM 1873 2261923 - 2261946 + r 82 -11.6 -3.889 | opp_overlap 2261922 2261923 CATTCTTTGGGAAAG GGGGGCGACC GGTG GGCCGCCCTC TTTGATGTCGTTCAG RD1_2369 2263108 - 2261969 - | spermidine/putrescine ABC transporter, periplasmic binding protein, putative TERM 1874 2262327 - 2262337 + g 70 -4.6 -4.56597 | ATCACAGATGCGACC GGCG CGC CGTC TTTTTCCAGAACGCC RD1_2370 2264149 - 2263256 - | LysR family transcriptional regulator RD1_2371 2264189 - 2264314 + | hypothetical protein apt 2264951 - 2264331 - | adenine phosphoribosyltransferase TERM 1875 2264597 - 2264585 - G 71 -6.2 -4.3129 | GATCCACCAGCAAAA CCCG TGTTC CGGG CGCAAAGGCAGGCGT RD1_2376 2266667 - 2265879 - | hypothetical protein TERM 1876 2266285 - 2266272 - G 71 -5.9 -4.4009 | overlap 2266274 GGCGAGGGCACAAAA CGGCA GCCA CGCCG CGACATAGCCCGCAA petF 2267017 - 2266664 - | ferredoxin TERM 1877 2266782 - 2266762 - G 73 -4.6 -4.62783 | gap 1, overlap 2266749 CACCGACGTCAAAAA CGCAGTCCG CCGT CGGTC-GCG CCACACAAAGCAGCA TERM 1878 2267029 - 2267063 + r 72 -11.4 -3.07947 | gap 1, opp_overlap 2267047 2267048 GCATGCGCCCCCCAC TGTGACCCCGGCCCG AAATCC CGGGCCGGGG-CAGG TGTTACCGATTGTTC sbp 2268441 - 2267077 - | selenium binding protein RD1_2379 2269278 - 2268454 - | IclR family transcriptional regulator TERM 1879 2268688 - 2268678 - G 72 -2.4 -4.82901 | opp_overlap 2268687 TCGCGCCCACAAAAA CGGG GGC CGCG ACGCTGGAAACACCG TERM 1880 2269418 - 2269437 + r 73 -9.3 -3.8046 | opp_overlap 2269400 2269434, overlap 2269412 CCGACGTTGCTGCAC CGCGTGT GGTCGA ACACGCG TTTCACGTTTTTCAA RD1_2380 2270594 - 2269554 - | sugar ABC transporter, substrate-binding protein, putative TERM 1881 2270386 - 2270416 + g 79 -12.5 -3.53012 | opp_overlap 2270385 2270404 CGGCTGTCGAAAACG CGCAGGTTGACGC CAAGA GCGGCGGCCTGCG TTTCGACACCGGACA TERM 1882 2270461 - 2270449 - G 71 -5.5 -4.42062 | TAGGCCTGAAAGAAA TCCCC CGT GGAGA GATAGCGCACAAGCG rbsC 2271630 - 2270620 - | ribose ABC transporter, permease protein TERM 1883 2270780 - 2270763 - G 74 -3.3 -4.84359 | gap 1, overlap 2270716 2270764 2270765 GGATGCCGACAAAAA GCGC-GCC CAT GGCGGTGC CAAAAGCATTCGGGC TERM 1884 2271550 - 2271538 - G 83 -4.7 -5.03145 | overlap 2271526 CAAGGGGCCAAAAAA CCCCG GTG CGGCG AGGCTGAAATAGACG TERM 1885 2271606 - 2271592 - G 81 -5.7 -4.83593 | overlap 2271596 AAGAAGGATCAAAAA GCCAT ACCGA ATGGC AAAGTCGAGGATGCG RD1_2382 2273144 - 2271627 - | sugar uptake ABC transporter ATP-binding protein, putative TERM 1886 2272367 - 2272381 + g 79 -12.8 -3.55563 | opp_overlap 2272359 CGGACAAGTCCAGCA CCGGGG CGG CCCCGG TTTGAACGGTGACAT TERM 1887 2273215 - 2273187 - H 74 -10.5 -3.57971 | ATAGGCAGGGTGAAA TACTTTTGTCAAA CAG TTTGACATAAGTA TAAACCGCCAAGTAT mtnK 2273277 - 2274536 + | methylthioribose kinase TERM 1888 2274833 - 2274798 - g 77 -3.9 -5.00616 | gap 2, overlap 2274799 2274800 2274817 CTTTCCTTGAAAAAA CCCGC-CCGACCGC-GA TCAA CCTGCGGTGGGCGCTGG ATCGGTGCCGCGCGG mtnA 2274533 - 2275636 + | methylthioribose-1-phosphate isomerase RD1_2385 2275640 - 2276650 + | transcriptional regulator, putative RD1_2386 2276921 - 2276673 - | hypothetical protein phnM 2278126 - 2276933 - | phosphonate metabolism protein PhnM TERM 1889 2277429 - 2277445 + g 76 -6.5 -4.56597 | overlap 2277430 ACCGCACCTGCCTCA TGCCTTG CCC CGAGGCG TTTTTGCAAAGCCAG phnN 2278970 - 2278410 - | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN phnL 2279650 - 2278967 - | phosphonate C-P lyase system protein PhnL phnK 2280424 - 2279654 - | phosphonates transport ATP-binding protein RD1_2391 2281287 - 2280421 - | phosphonate metabolism protein PhnJ TERM 1890 2281235 - 2281245 + g 71 -6.8 -4.22748 | TTTAGGATCGCACGG CGGA TCA TCCG TTTGGTTTGTTCGTC phnI 2282372 - 2281284 - | phosphonate metabolism protein, putative phnH 2282970 - 2282374 - | carbon-phosphorus lyase complex subunit phnG 2283425 - 2282970 - | alkylphosphonate utilization protein PhnG TERM 1891 2283266 - 2283240 - G 72 -12.2 -3.12351 | CTCGCCCAGATTGAA GGGCGCACCGGT GGC ACCAGCGCGCGC ACGCACCATCGTGCT TERM 1892 2283838 - 2283809 - g 77 -7.8 -4.36914 | gap 1, overlap 2283810 2283811 GCGCCGGCCAGAAAA GC-GCGTGCTCGC GTTGG ACGAGCGCGCAGC GACCGTTGGCGAGGC phnF 2283558 - 2284226 + | phosphonates metabolism transcriptional regulator PhnF, putative RD1_2396 2284374 - 2284234 - | hypothetical protein arsC 2284355 - 2285203 + | arsenate reductase, putative gap 2285200 - 2286198 + | glyceraldehyde-3-phosphate dehydrogenase TERM 1893 2286215 - 2286205 - g 75 -8.2 -4.25283 | overlap 2286206 AGTCTGTGACCAAAA GCGC CAC GCGC CCAAAGGGCCTGTCG RD1_2399 2286195 - 2287466 + | membrane transporter, putative RD1_2400 2288215 - 2287586 - | acetyltransferase phnE 2290470 - 2288281 - | phosphonate ABC transporter, permease protein TERM 1894 2290517 - 2290491 - R 100 -10.9 -4.96848 | gap 1, overlap 2290493 CCCCGGATACAAAAA TACCGACAGGCC CGAG GGCCTGCCGG-A CGCGTGATGAAAAGG TERM 1895 2290516 - 2290493 - R 100 -16 -4.11141 | overlap 2290491 CCGGATACAAAAATA CCGACAGGCC CGAG GGCCTGCCGG ACGCGTGATGAAAAG RD1_2402 2291446 - 2290535 - | phosphonate ABC transporter, periplasmic phosphonate-binding protein phnC 2292356 - 2291541 - | phosphonate ABC transporter, ATP-binding protein TERM 1896 2292299 - 2292313 + g 88 -7.1 -5.00616 | CGACCCGGATGGTTG CGGCA TCGAC TGCCG TTTTTTCCCCGAACC TERM 1897 2292526 - 2292514 - R 70 -9.1 -3.71649 | opp_overlap 2292511 2292514 GGTGCAAATGTCAAA TCCCG CGC CGGGA TGGTCTTGCCGCGCC hydA 2294484 - 2293087 - | dihydropyrimidinase TERM 1898 2293356 - 2293341 - G 78 -10.4 -3.85698 | opp_overlap 2293340 2293337 CCTTGCGCGGATAAA GCCCGT AGAG ACGGGC GTGATTGGTGGCGGT TERM 1899 2294048 - 2294096 + g 87 -10.7 -4.42806 | TTGAAGCTGGTATAG CCGGCCCGGATCAGCGCGGGCAG GTC CTGACCCAGCGTAACCGGGTCGG TTTGTTTGACGATCA TERM 1900 2294475 - 2294485 + g 91 -5.4 -5.31275 | CGGTGATGACGGTGT CATG GGT CATG TTTTTTCTCCTGCGA hyuE 2295224 - 2294481 - | hydantoin racemase, putative gatA 2296563 - 2295226 - | glutamyl-tRNA(Gln) amidotransferase, subunit A RD1_2407 2297484 - 2296684 - | ABC transporter, permease protein, putative RD1_2408 2298311 - 2297481 - | spermidine/putrescine ABC transporter, permease protein, putative potA 2299393 - 2298308 - | spermidine/putrescine ABC transporter, ATP-binding protein RD1_2410 2300453 - 2299398 - | spermidine/putrescine ABC transporter, substrate-binding protein RD1_2411 2301302 - 2300598 - | GntR family transcriptional regulator TERM 1901 2301407 - 2301394 - R 81 -8.1 -4.25283 | AGCTGGCGATCAAAA CAGCC AGAA GGCTG CAATCCGCATCAATC RD1_2412 2302561 - 2301743 - | ABC transporter permease protein TERM 1902 2302395 - 2302375 - G 70 -4.7 -4.56597 | gap 1, overlap 2302376 CGGTCTGCTCAAAAA CCTCTGCG TACCAG CGCAG-GG TGAAGCCTTCCGGCG RD1_2413 2303511 - 2302558 - | putrescine ABC transporter, permease protein, putative RD1_2414 2304518 - 2303490 - | spermidine/putrescine ABC transporter, ATP-binding protein, putative TERM 1903 2304499 - 2304527 + g 79 -15.9 -2.73681 | opp_overlap 2304475 2304490 2304500 CCAAAACGTTTGGAA ACCGCCCCGATGC GCA GCACCGGGGCGGC TGGTTCCGATCCGTC TERM 1904 2304526 - 2304500 - G 100 -21.6 -3.57309 | opp_overlap 2304499, overlap 2304475 2304490 CAAAACGTTTGGAAA CCGCCCCGATGC GCA GCACCGGGGCGG CTGGTTCCGATCCGT RD1_2416 2305615 - 2304566 - | extracellular solute-binding protein, putative TERM 1905 2305696 - 2305677 - R 74 -2.8 -4.85918 | CAGTATACAACAAAA CCTTCGAA TACT TTCGCAAG ATAAAAAATAAAAAA RD1_2417 2306549 - 2305776 - | DeoR family transcriptional regulator TERM 1906 2306642 - 2306628 - H 74 -2.7 -4.93696 | opp_overlap 2306629 GGCAAATATCAAAAA GGCGC GTCGA GTGCC ACATTTTTTCGATGC RD1_2418 2306638 - 2307804 + | glucosamine--fructose-6-phosphate aminotransferase, putative TERM 1907 2308464 - 2308521 + G 76 -5.3 -4.62336 | gap 1, overlap 2308465 CGAGCGAAGTCGAAC TGCGTGCCCTCGTGC-CCGGCGCGTCGG TCT CTGATGCACTGGCGGAAGTGGCCGCGCG TTTTTCCGGTGCCCT rbsK 2307806 - 2308828 + | ribokinase, putative TERM 1908 2308921 - 2308944 + G 70 -10.2 -3.53811 | opp_overlap 2308920 2308923, overlap 2308923 GCATGGTACGAAGAT TACGCGGTCG CAAA CGCCCGCGTG TTTGCCGAGGCTGGC TERM 1909 2309134 - 2309144 + G 74 -6.8 -4.42788 | overlap 2309124 TGCGTGGCGCATGCG TCGG GGG CCGA TTTTATCCGGTTGAA btpA 2308819 - 2309607 + | photosystem I biogenesis protein, putative RD1_2421 2309604 - 2310551 + | polysaccharide deacetylase family protein, putative TERM 1910 2310996 - 2311017 + G 89 -5.1 -5.24129 | gap 1, opp_overlap 2310999, overlap 2310997 2310999 CAGCGATTGCAAAAG TC-ACCGGTG CCG CGCCGGTCGG TTTTTTCTGCCGGGG RD1_2422 2310548 - 2311435 + | hypothetical protein hyuE 2311432 - 2312079 + | hydantoin racemase, putative RD1_2424 2312076 - 2313587 + | amidohydrolase family protein TERM 1911 2313575 - 2313603 + F 74 -4.5 -4.74801 | overlap 2313576 ATGGTGCAAGGACCT TCAGGGCCGCT GAAAAAA AGCGCCCTTGG TTTTTCATCAGGTTG TERM 1912 2314692 - 2314704 + G 73 -10.5 -3.59979 | GCTGGTGGACCAGCC CGCGC CGG GCGCG TTTGCGGTCGAGCAC RD1_2427 2313757 - 2314893 + | ABC transporter, ATP-binding protein, putative TERM 1913 2315016 - 2314969 - g 70 -10.2 -3.55548 | opp_overlap 2314982 GAAGACTCTTGCAAA GCGCCGCCGCGTTCGGCGCAGC CTCA GCCTTGCCGTTCTCGGCTGCGC GTGCTGCGGACTCTC RD1_2428 2314935 - 2315966 + | ABC transporter, substrate-binding protein, putative TERM 1914 2315993 - 2316046 + G 75 -2.4 -5.00616 | gap 3, overlap 2315993 2315999 GCCGCAACATATGAA C-CCGGACGTGT-GGACTG-GCGGCTC GCA GCGCCGCTCGGTCTGACGTATCTGGCG TTTTTTGCGGCACCG RD1_2429 2315969 - 2316820 + | ABC transporter protein, permease component, putative TERM 1915 2316960 - 2316971 + G 74 -3.6 -4.75174 | CCGCGTGTTGACCTT TCCG CCGC CGGG TTTTTCGCTTGAATG RD1_2430 2316820 - 2317641 + | ABC transporter, permease protein, putative TERM 1916 2317897 - 2317907 + G 70 -4.6 -4.56597 | CGTGGGGTTCTGGCG GCTG ATG CGGC TTTTTCAGGAGCGCG RD1_2431 2317649 - 2318560 + | polysaccharide deacetylase family protein, putative TERM 1917 2318817 - 2318833 + G 74 -7.2 -4.30576 | GCATTTGATGACCCC GGCGCC GGATG GGCGTC TTTTCATCGTCGACC pam 2318557 - 2319411 + | peptidylglycine alpha-amidating monooxygenase, putative RD1_2433 2319747 - 2319517 - | transcriptional regulator, putative RD1_2434 2320186 - 2319749 - | hypothetical protein RD1_2436 2320359 - 2320928 + | hypothetical protein RD1_2437 2321254 - 2320946 - | hypothetical protein ftrB 2321962 - 2321264 - | transcriptional activator FtrB TERM 1918 2322499 - 2322465 - g 76 -12.8 -3.29511 | overlap 2322466 GTCATGCTTGCAGAA GGTGACGCGCGCAAGA TGA TCTTGCGCGCGACAGA GGAACGTCAGCCGGA TERM 1919 2322498 - 2322466 - g 78 -16.3 -2.57564 | overlap 2322465 TCATGCTTGCAGAAG GTGACGCGCGCAAGA TGA TCTTGCGCGCGACAG AGGAACGTCAGCCGG TERM 1920 2322600 - 2322581 - g 74 -3.5 -4.77036 | opp_overlap 2322581, overlap 2322582 GTTCATCACCAAAAA GCTCGAC GCGCTT GTCGAGG AATTTGACCACATGA RD1_2439 2322219 - 2322716 + | hypothetical protein napA 2322735 - 2324381 + | nitrate permease TERM 1921 2324422 - 2324383 - f 100 -19.9 -3.34192 | overlap 2324387 AACCGGCTGAATGAA CGCATGGCCGGCCGGGC AAGGTG GCCCGGCCGGCCCCCCG AAACCGCCGACAGGG TERM 1922 2324418 - 2324387 - f 100 -20.1 -2.60244 | overlap 2324383 GGCTGAATGAACGCA TGGCCGGCCGGGC AAGGTG GCCCGGCCGGCCC CCCGAAACCGCCGAC narK 2324450 - 2325850 + | nitrite extrusion protein TERM 1923 2325891 - 2325863 - f 100 -16.7 -3.18912 | overlap 2325864 TGACCCACTGACCAA GCTCTGCGCCGGA TCG CCCGGCGCAGAGG TAGCCAAAAGGAGAA TERM 1924 2325890 - 2325864 - f 100 -20.2 -2.51133 | overlap 2325863 GACCCACTGACCAAG CTCTGCGCCGGA TCG CCCGGCGCAGAG GTAGCCAAAAGGAGA TERM 1925 2326263 - 2326248 - g 78 -7.5 -4.58283 | CAACCGTGTGAAAAA CCCGC TGATCC GCGGG CGGCTGATGAAAATC TERM 1926 2326297 - 2326277 - g 71 -6.8 -4.25104 | GGCGGCTGATGAAAA TCTGGCGC GAAAT GCGCAAGA CCAAGACCCCCGTCG TERM 1927 2327158 - 2327134 - g 80 -3.5 -5.08088 | gap 1 AACCTCGAAGAAAAA GCAGAC-GGC AAACAG GCCAGACTGC AGATGACGCTGATCC TERM 1928 2327489 - 2327471 - g 74 -6.6 -4.36914 | TGCCTGCTGACAAAA TCGCTCAC GTC GCGCGCGA ATTCGCAGATACGGC TERM 1929 2329461 - 2329448 - g 80 -3.7 -5.0538 | CCGGATCGGAAAAAA CCGGC AAGC GCGGG GGGATCCACAACTCC narG 2325913 - 2329653 + | nitrate reductase, alpha subunit TERM 1930 2329747 - 2329733 - g 73 -10 -3.63515 | CGTGACCTGCAAGAA CGTGTG GAC CACACG GGACGGGGTCGAATA TERM 1931 2329802 - 2329790 - g 80 -10.5 -4.0492 | CAACGTCGAGACAAA GCCGG GCA CCGGC TATCCGACGGATTGG narH 2329650 - 2331170 + | nitrate reductase, beta subunit TERM 1932 2331164 - 2331154 - f 70 -6.8 -4.13343 | opp_overlap 2331153 AGAAACCTCTTAAAA TGCC GGA GGCA ATGTGATGACCATTG narJ 2331170 - 2331880 + | nitrate reductase, delta subunit narI 2331892 - 2332686 + | nitrate reductase, gamma subunit RD1_2446 2332692 - 2333522 + | peptidyl-prolyl cis-trans isomerase, putative RD1_2447 2334099 - 2334674 + | hypothetical protein moeA 2334703 - 2335986 + | molybdopterin biosynthesis protein moeA ilvB 2338441 - 2336822 - | acetolactate synthase TERM 1933 2337015 - 2337001 - G 71 -8.5 -4.05788 | opp_overlap 2337001, overlap 2337002 GGTTGCCAAACGAAA GCGGC GTGTG GCCGC CGGTGTCCGCTTGCT gdhA 2339787 - 2338438 - | glutamate dehydrogenase TERM 1934 2340558 - 2340533 - g 85 -12.5 -3.80018 | overlap 2340526 GGTACATACGAACAA GACGCTCGCCC GCCT GCGCGAGCGCC AGCTTGCCAATTGGT fixK 2339937 - 2340665 + | nitrogen fixation regulatory protein fixK, putative RD1_2452 2340705 - 2341181 + | MgtC family protein TERM 1935 2341487 - 2341504 + GF 74 -5.5 -4.57569 | overlap 2341480 2341488 GGCTGATGGGCATGC TGGTGGC GCTT GCCATCG TTTTTCCAACCATCA RD1_2453 2341132 - 2342139 + | hypothetical protein TERM 1936 2342196 - 2342186 - f 70 -6.8 -4.18494 | CACGTGGACGCAAAA CGGA GGA TCCG ACGGGTACTTCGTGG RD1_2454 2342546 - 2342662 + | putative entericidin protein TERM 1937 2342709 - 2342690 - T 71 -6.3 -4.29845 | opp_overlap 2342690 GAACTTAATCGAAAA CGGCTCC TGTTTT GGGGCCG TTTTTTTATGTGCAA TERM 1938 2342690 - 2342709 + T 100 -8.5 -5.71712 | opp_overlap 2342690 GAACTTAATCGAAAA CGGCTCC TGTTTT GGGGCCG TTTTTTTATGTGCAA RD1_2455 2343528 - 2342926 - | ExoD family exopolysaccharide synthesis protein TERM 1939 2342983 - 2342973 - G 71 -6.8 -4.14392 | TGCCAATCGTCAAAA TGCC CAT GGCA GCCCATAATCCATCA TERM 1940 2343780 - 2343794 + r 74 -4.9 -4.82154 | overlap 2343761 GCGTAAGCGCGTTTG CGCTC AGGTC GGGCG TTTTTCATCTGCATT RD1_2456 2343938 - 2343816 - | hypothetical protein RD1_2457 2344329 - 2344225 - | hypothetical protein TERM 1941 2344387 - 2344397 + r 70 -6.8 -4.19678 | TTTGAGCGCTGCCGG CCAG ACA CTGG TTTGTTGACCTCTCG RD1_2458 2344611 - 2344429 - | hypothetical protein TERM 1942 2344669 - 2344687 + H 87 -8.2 -4.54727 | ACTGTGCGTTTGGTG GTTTCAAG TTT CTTGGAAC TTTTGCTTTGCCACA RD1_2459 2344761 - 2345774 + | PRC-barrel domain-containing protein TERM 1943 2345806 - 2345829 + F 100 -13.1 -5.00616 | opp_overlap 2345798 2345805 2345806, overlap 2345805 ACAGTAACGAGTAAC GCCCGGGGC CTTTTT GCTCCGGGC TTTTTTGCGGCACCA RD1_2460 2346260 - 2346709 + | hypothetical protein RD1_2461 2348140 - 2347022 - | sensory transduction histidine kinase, putative TERM 1944 2348492 - 2348518 + r 95 -14.4 -3.6682 | CTCGAAGCTTGCCAT GACGGACCGGCA CGC TGCCGGATCGTC TTTCAGTGAGTGCGC RD1_2462 2349601 - 2348777 - | RNA polymerase sigma factor, putative TERM 1945 2348882 - 2348898 + g 81 -5 -4.91109 | CGCCAGCCGTTTGCG GCCACG GTTCA CGCGGC TTTTTATCGTACCGA tcrX 2349634 - 2350407 + | two-component response regulator TERM 1946 2350518 - 2350550 + T 91 -14.1 -3.05343 | opp_overlap 2350517 CATGCCAGACCAGAG GGTGCCGGTCCCTTG TTT CAAGGGACCAGCGCA TGTTCACGATGTGGC trkA 2351204 - 2350554 - | Trk potassium uptake system protein TERM 1947 2351084 - 2351109 + g 71 -9.1 -3.8211 | gap 1 CGCAATCCAGCCGAT CCGTGAG-AGCT TCC AGTTTCTCACGG TTCTTGTCGATCAAG trkH 2352634 - 2351204 - | Trk potassium uptake system protein, transmembrane component RD1_2466 2352809 - 2353657 + | transport protein, putative TERM 1948 2353663 - 2353690 + T 100 -15.5 -3.35679 | opp_overlap 2353664, overlap 2353664 CGCAGATTGAGAAAA AGCCGCGCCGG TCAGAT CCGGCGCGGCC TTGTCGATAGGGGGG TERM 1949 2353664 - 2353689 + T 100 -19 -2.61264 | opp_overlap 2353664, overlap 2353663 GCAGATTGAGAAAAA GCCGCGCCGG TCAGAT CCGGCGCGGC CTTGTCGATAGGGGG TERM 1950 2353689 - 2353664 - T 100 -19 -4.89852 | opp_overlap 2353664 2353663 GCAGATTGAGAAAAA GCCGCGCCGG TCAGAT CCGGCGCGGC CTTGTCGATAGGGGG RD1_2467 2353930 - 2353715 - | hypothetical protein TERM 1951 2354052 - 2354075 + r 86 -11.8 -3.84246 | gap 1 ATTTCGTCAGACGCT CTCAT-CGCGC AAC GCGCGGATGAG TTCTTCCTTGGTCAT RD1_2468 2354312 - 2354043 - | hypothetical protein TERM 1952 2354164 - 2354177 + g 70 -5.2 -4.56597 | opp_overlap 2354162, overlap 2354162 2354166 2354168 CGCGCTTCATAACGG GGCG CCTTGC CGCC TTTTTCAGACGGCGA TERM 1953 2355623 - 2355643 + G 88 -3.9 -5.58454 | AGGCGGGATATTCCA TGGGTCTGA GCA TCGGGCGCA TTTTTTTCGTCTACG RD1_2470 2354458 - 2355795 + | MatE efflux family protein TERM 1954 2355842 - 2355810 - T 100 -18.5 -3.67175 | opp_overlap 2355808 2355807, overlap 2355806 2355813 AGGGTCGAAAACGAA CAACGCCGCCCCC TTGTATC AGGGGCGGCGTTG GGATTGTGCGCTCAG TERM 1955 2355839 - 2355813 - T 100 -14.4 -3.965 | opp_overlap 2355808 2355807, overlap 2355810 2355806 GTCGAAAACGAACAA CGCCGCCCCC TTGTATC AGGGGCGGCG TTGGGATTGTGCGCT RD1_2471 2356023 - 2355865 - | hypothetical protein TERM 1956 2356240 - 2356228 - H 78 -6.9 -4.64334 | opp_overlap 2356228 AACGCCGGAACAAAA GCCCC CCC GGGAC GTTCATTGGGCAAAC RD1_2472 2356262 - 2356486 + | hypothetical protein RD1_2473 2356494 - 2356877 + | hypothetical protein RD1_2474 2356964 - 2356872 - | hypothetical protein TERM 1957 2356931 - 2356904 - G 93 -7.7 -5.01811 | gap 1, opp_overlap 2356905, overlap 2356905 TGATCAAATCAAAAA GTCCGCCGCGGA TGTGT TCCG-GGCGGAT TTTTTTATGGGCGCG TERM 1958 2356905 - 2356930 + g 100 -11.2 -5.60993 | gap 1, opp_overlap 2356904 2356905 GATCAAATCAAAAAG TCCGCCGCGGA TGTGT TCCG-GGCGGA TTTTTTTATGGGCGC TERM 1959 2356930 - 2356905 - G 77 -11.2 -3.60002 | gap 1, opp_overlap 2356905, overlap 2356904 GATCAAATCAAAAAG TCCGCCGCGGA TGTGT TCCG-GGCGGA TTTTTTTATGGGCGC TERM 1960 2356986 - 2356960 - G 100 -17.4 -5.14563 | opp_overlap 2356944 2356960 2356957 2356955 2356953 CGGCGTATCAAAAAA TGCACCGCTTCA TCT CGAAGCGGTGCA TGGTGTATTTTAAGG TERM 1961 2356960 - 2356986 + g 85 -16.7 -2.85585 | opp_overlap 2356960, overlap 2356944 2356957 2356955 2356953 CGGCGTATCAAAAAA TGCACCGCTTC ATCTC GAAGCGGTGCA TGGTGTATTTTAAGG RD1_2475 2357266 - 2357012 - | hypothetical protein TERM 1962 2357313 - 2357327 + H 74 -2.8 -4.86731 | opp_overlap 2357315, overlap 2357315 AACGAACGGGTCCAA AATCAG TTC CTGATA TTTTCTTTGGAACAA TERM 1963 2357602 - 2357632 + H 100 -13.3 -5.40072 | gap 1, opp_overlap 2357604, overlap 2357604 CACCCCAAACAGCAC AACCGGCGAGCGCA GTCT TGCGC-CGCCGGTA TTTTTTTGAGCAGGA TERM 1964 2357604 - 2357630 + H 100 -15.9 -4.34482 | gap 1, opp_overlap 2357604, overlap 2357602 CCCCAAACAGCACAA CCGGCGAGCGCA GTCT TGCGC-CGCCGG TATTTTTTTGAGCAG TERM 1965 2357630 - 2357604 - H 100 -15.9 -3.56837 | gap 1, opp_overlap 2357604 2357602 CCCCAAACAGCACAA CCGGCGAGCGCA GTCT TGCGC-CGCCGG TATTTTTTTGAGCAG TERM 1966 2358022 - 2358012 - g 70 -4 -4.59027 | AACGACCATAGAAAA TGTT GAA AACA TGCAAAATCAGGTCG RD1_2476 2357656 - 2358780 + | hypothetical protein TERM 1967 2359237 - 2359252 + G 80 -11.8 -3.70902 | opp_overlap 2359225, overlap 2359203 AATGCTGCGCTGCAT GCCGCG GTTT CGCGGC TTTACCTATACCAAG pld 2358764 - 2360305 + | phospholipase D, putative RD1_2478 2360519 - 2361037 + | hypothetical protein TERM 1968 2361419 - 2361401 - g 78 -6.6 -4.68103 | overlap 2361402 TGAAGCTGAAGAAAA CTGCGCGG AAC CTGCGCAA AGATGCCAACACGAT RD1_2479 2361034 - 2361456 + | hypothetical protein RD1_2481 2361449 - 2362210 + | hypothetical protein RD1_2482 2362266 - 2362562 + | hypothetical protein TERM 1969 2362737 - 2362712 - f 80 -8.9 -4.08394 | ACATCGTGTCGAAAA CGGTACGGCTC GCAT GGGTCGTACCG GGACATGAGGTTCTC TERM 1970 2362835 - 2362823 - f 86 -10.5 -4.14392 | CGTGAACTGGTAAAA CCCGC AGT GCGGG TAAAAATTCCGATTG TERM 1971 2366018 - 2366005 - f 71 -8.1 -3.86194 | AATTTGCTGCACAAA CGGAG ATTT CTCCG CCATGAGCATTGCCA RD1_2485 2366021 - 2367289 + | hypothetical protein TERM 1972 2367445 - 2367479 + T 95 -15.1 -3.21416 | opp_overlap 2367430 CGCCGCCTCGATCCG CGCGGCATCGA-CCGGC AAG GCCGGTTCGGTGC-GCG TTGCTGATGGGCGTG TERM 1973 2367805 - 2367828 + T 88 -11 -4.14739 | opp_overlap 2367790 2367789 GCCTGCCACGAATGC CGCAAGTCAC TGAC GTGACTAGCG TTTTCGCGTGCATGC RD1_2486 2369162 - 2368323 - | hypothetical protein TERM 1974 2368915 - 2368883 - G 88 -13.6 -3.61894 | gap 2, opp_overlap 2368886 AACCGGGGTTAATAA CCAGCCATCGTGCGAC GGC GTCG-ACGA-GGCTGG TCTGGAAGTTGAAGG helD 2372000 - 2369250 - | helicase IV TERM 1975 2371690 - 2371676 - G 80 -10 -4.05245 | opp_overlap 2371685, overlap 2371679 CAGCAGAGAAGGAAA GGATCG GGG CGATCC GACGCATCGTCTTGT RD1_2490 2375803 - 2373866 - | hypothetical protein RD1_2491 2377076 - 2375796 - | putative reverse transcriptase/maturase family protein TERM 1976 2376093 - 2376114 + g 73 -13.7 -2.78725 | overlap 2376084 2376090 2376106 TCCTGTCCGCACTTT TTCGCGCGG CTTT CCGCGCGAG TGCTTCGTACGGTAT TERM 1977 2377266 - 2377278 + H 79 -3.3 -5.24129 | overlap 2377254 CAAGCACCCGGTCAG CCATG TGC CTTGG TTTTTTATCCCACGC RD1_2492 2377621 - 2379657 + | type I secretion target repeat-containing protein TERM 1978 2379890 - 2379865 - T 100 -17.6 -3.60971 | opp_overlap 2379865 ACTTGAACGTTCAAA GCGGTGCCGC TCACAG GCGGCACCGC TTTTCAACAAGGCAA TERM 1979 2379865 - 2379890 + T 100 -18.3 -4.07568 | opp_overlap 2379865 ACTTGAACGTTCAAA GCGGTGCCGCT CACA GGCGGCACCGC TTTTCAACAAGGCAA RD1_2493 2380716 - 2380252 - | hypothetical protein TERM 1980 2380643 - 2380660 + g 70 -3.4 -4.62069 | gap 1 TGCAGAATCCTGTTT CCGAGCT TGTCC AGC-CGG TTTTTGCGGTGCCAA RD1_2495 2382577 - 2381609 - | hypothetical protein TERM 1981 2381998 - 2382014 + Gg 76 -5.7 -4.71828 | overlap 2382000 CGCCTTTCAAATTCC CCGCGTC ATG GGCGCTG TTTTCTTGATCGGGT RD1_2494 2381564 - 2382388 + | hypothetical protein RD1_2496 2383438 - 2382869 - | transcriptional regulator, putative RD1_2497 2383569 - 2383946 + | hypothetical protein RD1_2498 2384018 - 2384965 + | pyridoxamine 5'-phosphate oxidase family protein, putative RD1_2499 2385032 - 2385463 + | hypothetical protein TERM 1982 2385539 - 2385550 + T 75 -5.8 -4.61199 | opp_overlap 2385522 2385520 2385518, overlap 2385520 2385538 ACAGCCCATCTGGTG CGCA GCCG TGCG TTTTATGTGTCACGT RD1_2500 2386456 - 2385560 - | LysR family transcriptional regulator TERM 1983 2386883 - 2386909 + G 73 -10 -3.61178 | CATGTATCGATCCCC GCTGTGCCCGGC GCG GCGGTGCACGGC TTTACCGTGGATGCC RD1_2501 2386556 - 2387707 + | pyridine nucleotide-disulphide oxidoreductase family protein RD1_2502 2387762 - 2388646 + | oxidoreductase, putative RD1_2505 2391216 - 2390185 - | hypothetical protein RD1_2504 2389279 - 2390283 + | tRNA-dihydrouridine synthase A TERM 1984 2390304 - 2390317 + gF 87 -8.1 -4.56775 | opp_overlap 2390286 2390288, overlap 2390286 GGCGCAGGTTTGCAG CCCTG CGCG CAGGG TTTTTCAAGCGCCGT TERM 1985 2390898 - 2390883 - Gg 74 -3.2 -4.78107 | opp_overlap 2390883, overlap 2390895 CAGGATCATGAAAAA CGCTTT TAAC AAGGCG TTTAGCACCACGCAA TERM 1986 2390957 - 2390971 + Gg 78 -7 -4.59109 | opp_overlap 2390957 2390956, overlap 2390959 CCGAGGTATATCAAT CCGCGC GCC GCGCCG TTTTTGAAACCTGTC RD1_2506 2390359 - 2391159 + | hypothetical protein suhB 2391269 - 2392054 + | inositol-1-monophosphatase RD1_2508 2392831 - 2392088 - | hypothetical protein TERM 1987 2392195 - 2392178 - G 81 -14.1 -3.28712 | TGTGCGCTGCCAGAA CGCCGGG CCGC CCCGGCG CACCCAGAACGGGAT TERM 1988 2392247 - 2392219 - G 71 -6.6 -4.25658 | overlap 2392216 2392220 ACGGGATCAAAAGAA CCATGCCGGCGA TGAAC CCGCCCGCATGC GCCCAATAGGCCACC TERM 1989 2392625 - 2392613 - G 78 -6.9 -4.59773 | overlap 2392589 TGCCAGGTGGAAAAA CCCGC CGT GCAGG AACATGGATGAAATC putA 2396319 - 2392900 - | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 1990 2393162 - 2393178 + g 71 -6.5 -4.20868 | overlap 2393166 GCCACGCCGCCCAAT GCGCG GACGAGG CGCGC TTGTTCTTTTGCGGC TERM 1991 2393948 - 2393920 - G 79 -15.9 -2.76227 | overlap 2393917 2393916 CTGAACATAAAGGCA CCGCAGGGCAGAG CAC CGCTGCCCGGCGG ATTGAAAGGCGCTTT TERM 1992 2396168 - 2396142 - G 71 -6.4 -4.25283 | opp_overlap 2396145, overlap 2396143 ATTCCGCGAGGAAAA CCTCCATCAGCC CGG GGCTGGTGGTGT TGCGAATGTCATCGA TERM 1993 2396145 - 2396165 + g 76 -13.3 -3.05521 | opp_overlap 2396143 2396142 CCGCGAGGAAAACCT CCATCAGCC CGG GGCTGGTGG TGTTGCGAATGTCAT putR 2396453 - 2396914 + | proline dehydrogenase transcriptional activator, putative RD1_2511 2396946 - 2397500 + | TPR domain-containing protein TERM 1994 2397582 - 2397598 + F 72 -3.6 -4.72272 | TTTTTTCTTGGTATG CACCGC AAAGC GCGTTG TTTTTGGTGCCCCGG TERM 1995 2397932 - 2397943 + F 71 -7.2 -4.06904 | overlap 2397940 TGATCGCAGGCGCAG GGCG TGAA CGCC TTTGTCGTTGGGTAC TERM 1996 2398799 - 2398822 + G 72 -2.4 -4.82901 | GTGCACCAATGATGA TGGCGGATGA AAAG TTGTCTGTCA TTTTTATCAACCCAA mcpA 2397982 - 2400573 + | methyl-accepting chemotaxis protein McpA RD1_2514 2401152 - 2401024 - | hypothetical protein RD1_2515 2401100 - 2401192 + | hypothetical protein TERM 1997 2401434 - 2401416 - TR 77 -11 -3.53811 | CTTATCTGCTTGAAA CACACCCG TTG CGGATGTG GGTCACACGAAACCC TERM 1998 2401627 - 2401665 + Tr 79 -3.1 -5.1675 | gap 1, opp_overlap 2401627 2401640 2401641 CGTTCTGGCAGAAAA CGTTTTAGCGAAACGCCT ATGC AGGCCTTCCGC-GAACCG TTTTTTCATCGCTGC TERM 1999 2402242 - 2402258 + Tr 73 -5.1 -4.66318 | GAATGTCTTTTCGTC TGTGTCG GGG CGAGACA TTTTCTTACGGTGCT metG 2404437 - 2402719 - | methionyl-tRNA synthetase RD1_2517 2405739 - 2404507 - | major facilitator transporter RD1_2518 2406401 - 2405805 - | hypothetical protein RD1_2519 2407082 - 2406459 - | hypothetical protein TERM 2000 2407028 - 2407017 - G 71 -7.2 -4.16842 | opp_overlap 2407019, overlap 2407018 CTCATCGGGAATAAA CCCG AGCG CGGG CGCCGTATATGCCGG RD1_2520 2407223 - 2408266 + | oxidoreductase, putative RD1_2521 2408365 - 2409279 + | hypothetical protein TERM 2001 2409274 - 2409262 - f 95 -10.5 -4.56597 | CTGGGTCTTGAAAAA CGCGC GCC GCGCG GATGACCGTCACACA TERM 2002 2409443 - 2409463 + G 71 -6 -4.32046 | overlap 2409444 2409445 2409461 GCTTTGGGAGTCGTT TGGCCCGG CAGCC CCGGGCAG TTTCGTTTTTGAAGA RD1_2522 2409303 - 2409767 + | hypothetical protein TERM 2003 2409813 - 2409823 + G 72 -2.4 -4.7254 | overlap 2409804 TCATCGGCGGCGGTT GGGC GGC GCGC TTTTTGCTGAACGGT TERM 2004 2411064 - 2411082 + G 78 -3 -5.11836 | opp_overlap 2411064 2411067, overlap 2411059 ATGTGGGGGGGAAAC TGATCGCC ACG GGGGAGCA TTTTCTTTTGCATGT RD1_2523 2409764 - 2411233 + | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase RD1_2524 2411336 - 2412253 + | hypothetical protein TERM 2005 2412335 - 2412277 - T 100 -14.9 -3.81062 | gap 2, opp_overlap 2412280, overlap 2412279 2412283 2412286 ACGAAAAATCTGAAA CACCAATTATGACGCTACGCTCTGAAACC CTT GGTTTCAGAGCGTAGCGTGATCAA-GGT- TTTCGCTTGACGCTT TERM 2006 2412334 - 2412279 - T 100 -20 -3.47713 | gap 1, opp_overlap 2412280, overlap 2412277 2412283 2412286 GAAAAATCTGAAACA CCAATTATGACGCTACGCTCTGAAACC CTT GGTTTCAGAGCGTAGCGTGATCAA-GG TTTTCGCTTGACGCT TERM 2007 2412280 - 2412334 + T 100 -20.2 -4.27584 | opp_overlap 2412279 2412277 2412283 2412286 AAAAATCTGAAACAC CAATTATGACGCTACGCTCTGAAACC CTT GGTTTCAGAGCGTAGCGTGATCAAGG TTTTCGCTTGACGCT TERM 2008 2412331 - 2412283 - T 100 -24.9 -3.46687 | opp_overlap 2412280, overlap 2412279 2412277 2412286 AATCTGAAACACCAA TTATGACGCTACGCTCTGAAACC CTT GGTTTCAGAGCGTAGCGTGATCA AGGTTTTCGCTTGAC TERM 2009 2412328 - 2412286 - T 100 -26.6 -2.8742 | opp_overlap 2412280, overlap 2412283 2412279 2412277 CTGAAACACCAATTA TGACGCTACGCTCTGAAACC CTT GGTTTCAGAGCGTAGCGTGA TCAAGGTTTTCGCTT RD1_2525 2413033 - 2412365 - | hydrolase, putative TERM 2010 2412660 - 2412617 - G 82 -9.4 -4.34486 | gap 1, overlap 2412618 2412629 ATCAACAAGAAAGAA GCGCGCATCGAACCGCCGGGG CCG CCCCGGTGGCGTGATG-GCCC GAAACACGAACTGCA TERM 2011 2412649 - 2412629 - G 76 -13.9 -3.06133 | overlap 2412617 2412618 GAAGCGCGCATCGAA CCGCCGGGG CCG CCCCGGTGG CGTGATGGCCCGAAA RD1_2526 2413527 - 2413111 - | hypothetical protein TERM 2012 2413293 - 2413272 - G 71 -7.3 -4.16251 | gap 1 AGACAACGTGCAAAA GCGGTGCCAT CAG ATGGC-CCAC AAAGAGGATCGTCAG TERM 2013 2413765 - 2413754 - R 79 -7.2 -4.43879 | ACGACCCAAGTAAAA GGCC GACT GGCC GCCGTGAACGATTTT pleD 2415490 - 2414021 - | diguanylate cyclase response regulator RD1_2528 2415526 - 2415810 + | hypothetical protein TERM 2014 2416206 - 2416231 + G 85 -6.7 -4.73108 | opp_overlap 2416220, overlap 2416209 CCGGCGCGCGCGCAT CTCGCCGCGGC AAAT GTCGCGGACAG TTTTGATTTTATCGC RD1_2529 2415807 - 2416499 + | haloacid dehalogenase-like hydrolase, putative TERM 2015 2416523 - 2416509 - f 75 -7.1 -4.40804 | CACTAGGGCAGAAAA CGACG AATGA CGTCG CGAATAAGACGGTTT TERM 2016 2417577 - 2417549 - g 71 -9.5 -3.8377 | opp_overlap 2417549 2417549 AACGTCGATATGAAA TCCGGCGCGCC GGCATTT GGCACGCCTGA ATACATGCGCGCGAC RD1_2530 2416595 - 2418157 + | trimethylamine methyltransferase family protein TERM 2017 2418316 - 2418292 - g 82 -12.9 -3.60296 | opp_overlap 2418285 TATGGTGACGTGAAA TGGCGTGAGGT CAC ACTTCACGCCA GGTTGCCATTTACCG RD1_2531 2418229 - 2418816 + | hypothetical protein RD1_2532 2418813 - 2419808 + | GGDEF domain-containing protein acrF 2423048 - 2419917 - | RND multidrug efflux transporter protein TERM 2018 2420014 - 2419994 - G 71 -7.5 -4.16814 | overlap 2419995 GCAGGACATAAAGAA CCGGCACCA CGA TGACGCCGA TCACCGTTGCGGCCA TERM 2019 2420190 - 2420204 + g 82 -12.8 -3.67597 | CGCTTCGCGAATGCT CGCGCC ATT GGCGCG TTCTTCCATGGCGAA TERM 2020 2420846 - 2420857 + g 85 -5.8 -5.03314 | CGCTGACAGGAATCC CGAG GGTC CTCG TTTTTTCGCGGTCAA TERM 2021 2421518 - 2421545 + g 93 -7.6 -5.00884 | gap 1, opp_overlap 2421513, overlap 2421518 2421519 2421521 CTTTTTCAAAGCTGG C-CAGCAGCCCCC TTG GCGGGCCGCTGCG TTTTTTCAGGACAAT TERM 2022 2422526 - 2422554 + g 79 -15.9 -2.75957 | opp_overlap 2422517, overlap 2422517 2422551 TCAGAACCTCCGCTT TGCCCACGCCCGG CGC CCGGGCGAGCGCA TCCTTGAGGTTGATG acrE 2424219 - 2423053 - | RND efflux transporter, MFP subunit recJ 2426713 - 2424974 - | single-stranded-DNA-specific exonuclease RecJ, putative TERM 2023 2425659 - 2425642 - G 70 -9.8 -3.48276 | CGGCGGCCCAGACAA GCGGGC GGTCAA GCCCGC GTGCCTCCGCCTGCG TERM 2024 2426453 - 2426437 - G 70 -3.6 -4.63542 | opp_overlap 2426429 2426437 2426438, overlap 2426438 CATAATCCGCAAAAA TCGCGA TTTTT TCGCGC TTTTGCACGGCGTTC glpX 2427722 - 2426748 - | fructose 1,6-bisphosphatase II hom 2429093 - 2427807 - | homoserine dehydrogenase TERM 2025 2428534 - 2428576 + g 77 -11.9 -3.65351 | opp_overlap 2428527 2428532 TCGAGATAGCCAAGC CCGTCGGCCTCGGCAAAGA CTTCA TCGTAGCTGAGACCGGCGG TTTCCATCCGCGTCA RD1_2539 2429575 - 2429189 - | hypothetical protein TERM 2026 2429254 - 2429214 - G 74 -11 -3.53012 | gap 1, opp_overlap 2429243, overlap 2429215 GTCGTGCTCCGTAAA TCGGCGGCGCGCGCGCGCA ACCG TGCGATC-CGCGCCGCCAG TGCCGCCTCGGCTTC TERM 2027 2429253 - 2429215 - G 77 -14.5 -2.71712 | gap 1, opp_overlap 2429243, overlap 2429214 TCGTGCTCCGTAAAT CGGCGGCGCGCGCGCGCA ACCG TGCGATC-CGCGCCGCCA GTGCCGCCTCGGCTT TERM 2028 2429484 - 2429474 - G 70 -3.2 -4.69962 | overlap 2429476 GAGATGAAAAAACAA TGCC GCA AGCA TGTGGTACAGGCAAG garR 2429638 - 2430582 + | 2-hydroxy-3-oxopropionate reductase, putative serS 2431887 - 2430595 - | seryl-tRNA synthetase RD1_2542 2432786 - 2431977 - | trypsin domain-containing protein TERM 2029 2432733 - 2432757 + g 89 -9.9 -4.56597 | overlap 2432723 2432741 TAGGCGGCGGCACAG GCTGCCTTTGC GCG GCGCAGGCGGC TTTTTCAGACCACGC yajC 2432905 - 2433183 + | preprotein translocase, YajC subunit, putative secD 2433217 - 2434878 + | preprotein translocase subunit SecD secF 2434880 - 2435860 + | preprotein translocase subunit SecF RD1_2546 2435874 - 2436233 + | hypothetical protein TERM 2030 2436516 - 2436548 + G 73 -4.7 -4.62471 | TGAAATCCATGCTCT CTGTGGCCGAAAACC TGC GGTTCTGGGCGGCGG TTTTTGGGCGTTCGG TERM 2031 2436574 - 2436586 + G 76 -9.1 -4.08485 | TTCGGACATTGCCCC GGCCT TGC AGGCC TTTGATTTACATGAC ccmA 2436278 - 2436898 + | cytochrome c biogenesis protein CcmA TERM 2032 2436952 - 2436966 + G 83 -4.2 -5.01845 | overlap 2436950 2436933 GCAGGGGGCGGCTTC GGCC TCGGGCT GGCC TTTTTCCTTATTGTC TERM 2033 2437251 - 2437263 + G 100 -10.5 -4.88736 | opp_overlap 2437249, overlap 2437259 AATTCTGTTAAACCT GCCGG GTC CCGGC TTTTTCTGGCTGGTG ccmB 2436895 - 2437551 + | heme exporter protein ccmB, putative TERM 2034 2437987 - 2438041 + G 91 -4.9 -5.49568 | gap 2, overlap 2437990 2437991 2437998 GCTCTGGGGCCAGCC CATG-TGGGGCACGTGGT-GGGCGTGG GAT CCGCGCCTGACGTCGTTCCTCATCCTG TTTTTGTTTTACCTT ccmC 2437604 - 2438371 + | heme exporter protein RD1_2550 2438368 - 2438526 + | hypothetical protein cycY 2438519 - 2439058 + | thiol:disulfide interchange protein cycY, putative gltK 2439930 - 2439322 - | glucose ABC transporter, ATP-binding subunit RD1_2553 2440536 - 2440108 - | ABC transporter, permease protein, putative TERM 2035 2440676 - 2440649 - R 100 -16.4 -3.89822 | gap 1, opp_overlap 2440655, overlap 2440650 CACGTAGTTGATAAA GCGAAACGCCCCG GGC CGGGGCGTTTC-C TTCAGGTTTCAAGCG TERM 2036 2440676 - 2440650 - R 93 -16.6 -2.93572 | opp_overlap 2440655, overlap 2440649 ACGTAGTTGATAAAG CGAAACGCCCCG GGC CGGGGCGTTTCC TTCAGGTTTCAAGCG TERM 2037 2440655 - 2440671 + r 100 -15.1 -3.9444 | opp_overlap 2440649 2440650 GTTGATAAAGCGAAA CGCCCCG GGC CGGGGCG TTTCCTTCAGGTTTC RD1_2554 2441319 - 2440696 - | hypothetical protein TERM 2038 2441059 - 2441071 + g 71 -6.9 -4.2558 | GCTTCCATTGTCATC CGGCG CGC CGTCG TTTTCCTGAACGATC TERM 2039 2441562 - 2441605 + r 90 -12.2 -4.03413 | overlap 2441564 AGTGTGTTTTGGGAC ATCCGCCCCCCGGCGCGC CGTCGTTT GCGCGCCGGGGTGCAGTC TTTCTCTAGGCGGCT TERM 2040 2441564 - 2441603 + r 100 -19.2 -3.61232 | overlap 2441562 TGTGTTTTGGGACAT CCGCCCCCCGGCGCGC CGTCGTTT GCGCGCCGGGGTGCAG TCTTTCTCTAGGCGG acnA 2444298 - 2441611 - | aconitate hydratase TERM 2041 2443686 - 2443712 + g 79 -12.2 -3.54307 | AGGCCACTTCGGCCC CGTTCTGGTCGG TAT CCGTCCAGACCG TTTGCGCCAGATATT TERM 2042 2444223 - 2444186 - G 76 -6.1 -4.58395 | overlap 2444195 GGCAGTTTTGAAAAA TCTCCCAAACCGGCTGC GGTC GCCGCCGGAATGGAATA GTAATCAATGCTCTG TERM 2043 2444214 - 2444195 - G 73 -10.6 -3.61889 | overlap 2444186 GAAAAATCTCCCAAA CCGGCTGC GGTC GCCGCCGG AATGGAATAGTAATC RD1_2556 2444529 - 2445224 + | hypothetical protein RD1_2557 2446132 - 2445230 - | lipid A biosynthesis lauroyl acyltransferase, putative TERM 2044 2445687 - 2445724 + g 72 -11.1 -3.27774 | gap 1, opp_overlap 2445679 2445681 2445688, overlap 2445688 2445691 CGATAAAGACCACCA ACCGCGTG-GCCGCGCCC GGC GAGCGCGGCGCGCACGGC TTCATAATTGCCGTA TERM 2045 2445688 - 2445723 + g 76 -14.6 -2.56343 | gap 1, opp_overlap 2445679 2445688 2445681, overlap 2445687 2445691 GATAAAGACCACCAA CCGCGTG-GCCGCGCCC GGC GAGCGCGGCGCGCACGG CTTCATAATTGCCGT TERM 2046 2445723 - 2445688 - G 93 -16.8 -3.31691 | gap 1, opp_overlap 2445687 2445688 2445691, overlap 2445679 2445681 GATAAAGACCACCAA CCGCGTG-GCCGCGCCC GGC GAGCGCGGCGCGCACGG CTTCATAATTGCCGT fliG 2447404 - 2446346 - | flagellar motor switch protein FliG, putative TERM 2047 2446980 - 2446960 - G 71 -5.3 -4.37886 | opp_overlap 2446960 CCAGTTTGGACAAAA GTACCGCCG CGA CTTCGGTAC TTTCATTTTGCAGCA TERM 2048 2447652 - 2447633 - R 100 -11.4 -5.60993 | opp_overlap 2447633 2447631 CGTCGCACAAAAAAA GGCGCTCC CGAA AGAGCGCC TCTTATCTCGCTTCC TERM 2049 2447633 - 2447652 + r 73 -10.7 -3.34983 | opp_overlap 2447633, overlap 2447631 CGTCGCACAAAAAAA GGCGCTC CCGAAA GAGCGCC TCTTATCTCGCTTCC purB 2449246 - 2447942 - | adenylosuccinate lyase TERM 2050 2448592 - 2448575 - G 70 -4 -4.59109 | GAGAGTTGCGAAAAA CGCGGC ATGTCG GTCGCG CGGGATCACCTGTGT RD1_2560 2449417 - 2449821 + | hypothetical protein bioY 2449897 - 2450502 + | BioY family protein, putative TERM 2051 2450557 - 2450529 - f 80 -10.1 -4.03078 | opp_overlap 2450532, overlap 2450531 2450532 GCATGATATGACAAA CAGGGGCCGGCGC ATT GCGCTGGCCCTTT TTGCATTAAGGTCAA TERM 2052 2450555 - 2450531 - f 85 -12.7 -3.60505 | opp_overlap 2450532, overlap 2450529 2450532 ATGATATGACAAACA GGGGCCGGCGC ATT GCGCTGGCCCT TTTTGCATTAAGGTC TERM 2053 2450554 - 2450532 - f 90 -16.2 -2.7558 | opp_overlap 2450532, overlap 2450531 2450529 TGATATGACAAACAG GGGCCGGCGC ATT GCGCTGGCCC TTTTTGCATTAAGGT TERM 2054 2450532 - 2450554 + F 100 -18.4 -4.74504 | opp_overlap 2450531 2450529 2450532 TGATATGACAAACAG GGGCCGGCGC ATT GCGCTGGCCC TTTTTGCATTAAGGT RD1_2562 2450637 - 2451206 + | hypothetical protein TERM 2055 2451448 - 2451468 + T 80 -9 -4.07568 | gap 1, opp_overlap 2451427, overlap 2451427 2451445 CGACCTGTGCGCCCG CCCGGTGGT ATTG ACC-CCGGG TTTTCCCGCCCGCCC RD1_2563 2452776 - 2451559 - | hypothetical protein TERM 2056 2452847 - 2452860 + H 72 -2.3 -4.89852 | opp_overlap 2452847 2452848, overlap 2452848 CATGTGTCAGTAAAA TCACG CGGT CGTGC TTTTTATGGATGTGC TERM 2057 2453057 - 2453041 - g 70 -3.7 -4.66833 | GTCGAATGGGAAAAA CACGA GGGTGGG TCGTG ACCTTGGTGAGGTGC RD1_2564 2453031 - 2453930 + | hypothetical protein TERM 2058 2453958 - 2453941 - T 93 -10.5 -4.46073 | opp_overlap 2453941 2453940 CCTGAACACAATAAA CGCGACC CAAG GGCCGCG CTTCTCGCTTTGATT RD1_2565 2454698 - 2453985 - | hypothetical protein RD1_2566 2456269 - 2454926 - | M24 family metallopeptidase TERM 2059 2456568 - 2456602 + G 76 -6.3 -4.58283 | gap 1, opp_overlap 2456573, overlap 2456583 TGACGACGTGCTGTG GCAAAGCGATG-CCGC CTGC GCGGCCATCGCGGAGC TTTTTGACAGGGTTC TERM 2060 2456597 - 2456573 - g 79 -12.2 -3.53091 | gap 1, opp_overlap 2456568 2456583 ACGTGCTGTGGCAAA GCGATG-CCGC CTGC GCGGCCATCGC GGAGCTTTTTGACAG TERM 2061 2456847 - 2456832 - g 70 -4.6 -4.56775 | overlap 2456833 ACGCTGGCCGAAAAA GCAGGG CGGC CCCTGT CAGACATCCACGCAC RD1_2567 2456398 - 2456868 + | hypothetical protein RD1_2568 2456907 - 2457128 + | hypothetical protein TERM 2062 2457232 - 2457249 + T 80 -9.8 -4.05788 | opp_overlap 2457232 CAGGGATGCAAAAAA GGCGCC CCGTGA GGCGCC TTTGATTTGCAACGG TERM 2063 2457249 - 2457232 - T 100 -10.5 -5.09895 | opp_overlap 2457232 CAGGGATGCAAAAAA GGCGCCC CGTG AGGCGCC TTTGATTTGCAACGG glnA 2458685 - 2457282 - | glutamine synthetase, type I TERM 2064 2457508 - 2457532 + g 74 -4.1 -4.73613 | overlap 2457512 2457515 2457516 AGATCATAGAGGTTT TTGTCCATGGC CTC GCCGGGGTCGA TTTTGTTCATGATAC glnB 2459072 - 2458734 - | nitrogen regulatory protein P-II TERM 2065 2459341 - 2459360 + r 82 -5.6 -5.0538 | GATGGAGCGGGCCGG GTGCAGCG TGAT CGATGCGC TTTTTTCCAGTAAAC RD1_2573 2461444 - 2460914 - | hypothetical protein TERM 2066 2461759 - 2461787 + r 100 -6 -5.81412 | overlap 2461760 TGACATGGTTTTTGA GGGCCTATCG TTTCAAACT CGATAGGCCG TTTTTTTTGAATCCA TERM 2067 2461760 - 2461786 + r 83 -9.5 -4.07763 | overlap 2461759 GACATGGTTTTTGAG GGCCTATCG TTTCAAACT CGATAGGCC GTTTTTTTTGAATCC TERM 2068 2461855 - 2461872 + r 77 -4.1 -5.00895 | opp_overlap 2461857, overlap 2461857 GCGCCAAACCTGACA TACGCAT CACA GTGCGTG TTTTTATCTGCTCAA ssb 2462414 - 2461914 - | single-strand binding protein RD1_2576 2462636 - 2463220 + | transglycosylase SLT domain-containing protein RD1_2578 2465379 - 2463289 - | ABC transporter, ATP-binding protein, putative TERM 2069 2465347 - 2465323 - G 95 -11.5 -4.57073 | opp_overlap 2465328 CAGCCGGGTGAAAAA GGAGATCGACA GCT TGTCGATTTCC AGAATAGGACCCTCA RD1_2580 2466681 - 2465464 - | oligopeptide ABC transporter, permease protein, putative TERM 2070 2466386 - 2466416 + g 100 -9.6 -4.92757 | TAGGCGTATTCGCCC TCTTCGGCACCGCG CAT CGGCGTGCCGGGGA TTTTGTTCTTCATCC RD1_2581 2467737 - 2466694 - | oligopeptide ABC transporter, permease protein, putative pobR 2468749 - 2467946 - | AraC family transcriptional regulator miaA 2469690 - 2468851 - | tRNA delta(2)-isopentenylpyrophosphate transferase RD1_2583 2468784 - 2468933 + | hypothetical protein pyrH 2469832 - 2470560 + | uridylate kinase, putative frr 2470644 - 2471207 + | ribosome recycling factor uppS 2471371 - 2472147 + | undecaprenyl diphosphate synthase RD1_2588 2472154 - 2472948 + | phosphatidate cytidylyltransferase dxr 2472956 - 2474128 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase ecfE 2474140 - 2475483 + | protease ecfE, putative RD1_2592 2475586 - 2475717 + | hypothetical protein TERM 2071 2475883 - 2475905 + G 71 -9 -3.73072 | opp_overlap 2475869 ACTGGCGCGCAAGGC GTGCAGGGCG CGA CGCGCCGCAC TTTCATAAAACCATT TERM 2072 2476662 - 2476638 - g 74 -13 -3.14564 | TGATTTTCGCACCAA TTCGGTCAAC GCGGA GTTGACCGAA GAACGCGATGGCTAC RD1_2593 2475883 - 2478213 + | outer membrane protein, putative TERM 2073 2478441 - 2478420 - g 76 -9.5 -4.07568 | gap 1 TTTGGCTGCTGAAAA CAGGCGCATC GAA GATGC-CCTG GAAGCTGAGGAAAGG RD1_2594 2478217 - 2478780 + | hypothetical protein fabZ 2478861 - 2479319 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ lpxA 2479323 - 2480108 + | UDP-N-acetylglucosamine acyltransferase TERM 2074 2480673 - 2480696 + G 76 -12.4 -3.40403 | gap 1 TGGCGACCCTTCCGA CCGCTGTGCGC CGC GCGCGC-GCGG TTCTGGTCAAAGCGC RD1_2597 2480108 - 2480899 + | hypothetical protein TERM 2075 2481232 - 2481217 - g 78 -2.5 -5.01732 | opp_overlap 2481224 AAGCTGGTGAAAAAA TCCAG CAGCAT CCGGA CGGTGCATTATGTGG lpxB 2480896 - 2482056 + | lipid-A-disaccharide synthase trmU 2483262 - 2482120 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase RD1_2600 2483356 - 2483664 + | hypothetical protein ctrA 2483764 - 2484483 + | transcriptional regulator CtrA TERM 2076 2484494 - 2484519 + F 88 -9.7 -4.40358 | CCTGAACAATACCGA CAGGCGCGACA GCAA TTTCGCGTCTG TTTTGTCAGATCAGT TERM 2077 2484812 - 2484846 + G 70 -4 -4.58663 | opp_overlap 2484801 2484800, overlap 2484821 2484821 AAACGCGCCGACAGC CCGACCGATCGCGTCG GCG CAGCGCCGTCAGCCGG TTTTTCCAAGGTGGT TERM 2078 2485285 - 2485303 + G 85 -5.9 -5.1287 | TGACGCGCGTATCAC CCAGAGC AGACC GCTCAGG TTTTTTGCATATGCC ligA 2484611 - 2486728 + | DNA ligase, NAD-dependent recG 2486725 - 2488815 + | ATP-dependent DNA helicase RecG, putative TERM 2079 2488938 - 2488928 - T 89 -3.2 -5.53288 | CTCAACTGAAAAAAA TCGC ACT GCAA TCACAGGGAACGCTG TERM 2080 2489169 - 2489194 + T 100 -13.3 -5.7946 | gap 1, opp_overlap 2489169 GAGAATGCTTAACTA TGCCGC-CGCCC GCA GGGTGCGCGGCA TTTTTTTATTCGAAA RD1_2605 2490597 - 2489200 - | methyl-accepting chemotaxis protein, putative RD1_2606 2491122 - 2490670 - | hypothetical protein TERM 2081 2490996 - 2491011 + g 83 -4.6 -5.03314 | CGGTTACGGCCGACC CGCACA GTGG TGAGCG TTTTTTGACACTCGC hisI 2491200 - 2491586 + | phosphoribosyl-AMP cyclohydrolase RD1_2608 2492446 - 2491583 - | glutamyl-tRNA synthetase, putative RD1_2609 2493057 - 2492443 - | hypothetical protein TERM 2082 2492929 - 2492908 - G 71 -7.3 -4.27617 | gap 1, opp_overlap 2492921 2492927, overlap 2492909 CATATCCGATGAAAA CTGCG-CGAG GGC CTCGGCGCAA CGGCCCGGTGTTGCA gid 2494448 - 2493096 - | tRNA (uracil-5-)-methyltransferase Gid RD1_2611 2494596 - 2495015 + | thioesterase family protein TERM 2083 2495132 - 2495153 + T 76 -10.1 -3.8046 | opp_overlap 2495132 TCAGGCACAAAAAAA CGCCCGCTT TGAC AAGCAGGCG TTTGAAATTTTTCGG TERM 2084 2495153 - 2495132 - T 100 -12.3 -5.64274 | opp_overlap 2495132 TCAGGCACAAAAAAA CGCCCGCTT TGAC AAGCAGGCG TTTGAAATTTTTCGG rpsI 2495677 - 2495186 - | 30S ribosomal protein S9 rplM 2496141 - 2495680 - | 50S ribosomal protein L13 TERM 2085 2496164 - 2496174 + H 70 -6.8 -4.07568 | TCCCCGTTTAAATGT GACG TCT CGTC TTTTGGGACCAGACC TERM 2086 2496426 - 2496396 - H 89 -3.3 -5.55695 | gap 1, overlap 2496398 GAACAACAGAAAAAA TCGCGCT-GCCT CTCCCCGC AGTCGAGCGCGA CCAGTGATATGCAGC TERM 2087 2496618 - 2496633 + H 75 -6.1 -4.59853 | overlap 2496609 2496608 CTGTCAGGGGCGCGT CGCGA CCCGTT TCGCG TTTTTGCCACATTCG RD1_2614 2496716 - 2498182 + | hypothetical protein RD1_2615 2498179 - 2498724 + | hypothetical protein TERM 2088 2499252 - 2499266 + G 80 -3.5 -5.02074 | overlap 2499247 ACGCGACCACGATAT GCAGG GCAGG TCTGC TTTTTTACCGGGTCC RD1_2616 2498721 - 2499344 + | hypothetical protein RD1_2617 2499931 - 2499362 - | hypothetical protein TERM 2089 2499538 - 2499566 + g 84 -11 -4.0371 | gap 1 GCGAATTCTTTGCAA CGCCTCTGCTGCG CGAT CGCAGCAT-GGCG TTTGTCTGCGGGCTG RD1_2618 2500198 - 2500070 - | hypothetical protein RD1_2619 2500244 - 2501857 + | peptidoglycan binding domain-containing protein lpxD 2501890 - 2502990 + | UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase RD1_2621 2502977 - 2503282 + | acyl carrier protein RD1_2623 2503289 - 2504497 + | beta-ketoacyl synthase family protein RD1_2624 2505195 - 2504518 - | hypothetical protein TERM 2090 2505182 - 2505172 - G 71 -6.8 -4.15833 | opp_overlap 2505176 AGCATGATCGCAAAA GCCT GTC AGGC GACCTGCCTTCATTT TERM 2091 2505269 - 2505232 - H 81 -12.1 -3.54424 | opp_overlap 2505232 2505233, overlap 2505233 2505241 TTCGAGGGTCTTAAA TCGAAAAAAGGAACGCG AAAC CGCATTCCCTTTTCCGT ATTTTTTTCTCCCCG TERM 2092 2505232 - 2505270 + H 91 -3.9 -5.61596 | gap 1, opp_overlap 2505232 2505233 2505241, overlap 2505233 TTCGAGGGTCTTAAA T-CGAAAAAAGGAACGCG AAAC CGCATTCCCTTTTCCGTA TTTTTTTCTCCCCGT TERM 2093 2505233 - 2505268 + H 85 -9 -4.45201 | opp_overlap 2505232 2505233 2505241, overlap 2505232 TCGAGGGTCTTAAAT CGAAAAAAGGAACGCG AAAC CGCATTCCCTTTTCCG TATTTTTTTCTCCCC TERM 2094 2505268 - 2505233 - H 86 -15.6 -2.72511 | opp_overlap 2505233 2505232, overlap 2505232 2505241 TCGAGGGTCTTAAAT CGAAAAAAGGAACGCG AAAC CGCATTCCCTTTTCCG TATTTTTTTCTCCCC TERM 2095 2505260 - 2505241 - H 100 -10 -5.22039 | opp_overlap 2505233 2505232, overlap 2505233 2505232 CTTAAATCGAAAAAA GGAACGCG AAAC CGCATTCC CTTTTCCGTATTTTT TERM 2096 2505409 - 2505385 - H 100 -13.6 -5.42259 | overlap 2505399 CCAGTTTTAAAAAAA GGCCGTACCA GAAGT TGGCACGGCC AGTCTAACAGGGAGG TERM 2097 2506335 - 2506366 + G 72 -2.9 -4.77036 | overlap 2506327 2506326 2506351 CCCCGATCAGCCCAA GCTGGTGTTCTTC TTTGAT GAGGCACATCTGC TTTTTGATGATGCGC TERM 2098 2506515 - 2506529 + G 71 -7.8 -4.07568 | opp_overlap 2506515 CGGCAACCGCATACA GCATGC GCT GCGTGC TTTTACGGCAAAAGA RD1_2625 2505535 - 2507088 + | hypothetical protein TERM 2099 2507082 - 2507096 + T 71 -4.2 -4.67038 | CAGTCTGTTCAAAGG GCGCTA GTT TACCGC TTTTACTTTTCCGGG RD1_2626 2508415 - 2507099 - | branched-chain amino acid ABC transporter, permease protein, putative RD1_2627 2509422 - 2508412 - | branched-chain amino acid ABC transporter, permease protein, putative RD1_2628 2510725 - 2509901 - | branched-chain amino acid ABC transporter, ATP-binding protein TERM 2100 2510609 - 2510636 + g 76 -6.8 -4.57569 | GATCAGAAAAGGGCC GGGGGGTGCTGC ATGT GCTGTGCCGCCC TTTTTCACCGGGTAG RD1_2630 2511519 - 2510722 - | branched-chain amino acid ABC transporter, ATP-binding protein TERM 2101 2511549 - 2511575 + r 93 -12.2 -4.34402 | opp_overlap 2511549 TGCAGCGTTCAAAAA CAGCCCGGCATC AGC GACACCGGGCTG TTTTCATATCAAACG TERM 2102 2511575 - 2511549 - R 100 -16.6 -4.58395 | opp_overlap 2511549 TGCAGCGTTCAAAAA CAGCCCGGCATC AGC GACACCGGGCTG TTTTCATATCAAACG RD1_2631 2512786 - 2511596 - | branched-chain amino acid ABC transporter, periplasmic substrate-binding protein RD1_2632 2512799 - 2512915 + | hypothetical protein TERM 2103 2513139 - 2513106 - g 73 -4.4 -4.68593 | gap 1, opp_overlap 2513109 2513120, overlap 2513108 CTGATCACTGAAAAA GACGGGCGGGTGCTC TTGTG GAGCGCCGGCACG-C TGCGCGAGGTTGAGG RD1_2633 2512944 - 2514032 + | glucose dehydrogenase, putative TERM 2104 2514135 - 2514113 - T 83 -7.6 -4.56597 | overlap 2514119 CGCTTTGGTTAAAAA GACAACCGCG CTG CGTGGCTGCC GCGCTCCCGGTAGGG RD1_2634 2515050 - 2514106 - | AraC family transcriptional regulator TERM 2105 2516385 - 2516407 + G 73 -10.5 -3.67296 | opp_overlap 2516373 2516381 ATACGATCAAGTCCT CGACCGGGT ACAAG ACCCGGCCG TTTGAATCGGTCCTG RD1_2635 2515310 - 2516680 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2106 2516724 - 2516698 - T 100 -18 -5.15634 | opp_overlap 2516698 CACGGCATTAAAAAA CGCCCGCTGGTT TCA AACCGGCGGGCG TTTTTGTTGTGTCTG TERM 2107 2516698 - 2516724 + T 100 -20.2 -5.27206 | opp_overlap 2516698 CACGGCATTAAAAAA CGCCCGCTGGTT TCA AACCGGCGGGCG TTTTTGTTGTGTCTG RD1_2636 2517492 - 2516779 - | hypothetical protein TERM 2108 2517580 - 2517560 - H 78 -11.9 -3.30124 | opp_overlap 2517544 2517560 TGGTACTTGTTACAA GCAGGAAAC ACT GCTTCCTGC CGAAAATTGATTACT TERM 2109 2518315 - 2518304 - g 72 -2.2 -4.75308 | gap 1 AGGAACATGCAAAAA CGCGC AGT GC-CG AGGCAGGCGACATCC RD1_2637 2517760 - 2518650 + | hypothetical protein RD1_2638 2518663 - 2519298 + | guanylate kinase, putative RD1_2639 2519295 - 2519822 + | transferase, putative TERM 2110 2520905 - 2520924 + G 83 -2 -5.25893 | CCGAGCAACGCGCCG CCCTTGGG ATAT CGGAAGGG TTTTTTCGTGTCTCT mdeA 2519824 - 2521011 + | methionine gamma-lyase phoR 2521030 - 2522073 + | phosphate regulon sensor protein, putative pstS 2522268 - 2523308 + | phosphate ABC transporter, periplasmic phosphate-binding protein TERM 2111 2523363 - 2523326 - f 74 -4.7 -4.68124 | opp_overlap 2523329, overlap 2523327 2523328 2523335 TGAACAGAGACAAAA GCGGCGAAAGGCGGCAA TTTC CTGCGGCCTTTCGCTTT ACTTGAAGTGGCATG TERM 2112 2523361 - 2523328 - f 72 -11.7 -2.62789 | opp_overlap 2523329, overlap 2523327 2523326 2523335 AACAGAGACAAAAGC GGCGAAAGGCGGCAA TTTC CTGCGGCCTTTCGCT TTACTTGAAGTGGCA TERM 2113 2523329 - 2523360 + F 100 -14.5 -3.91911 | opp_overlap 2523328 2523327 2523326 2523335 ACAGAGACAAAAGCG GCGAAAGGCGGCA ATTTCC TGCGGCCTTTCGC TTTACTTGAAGTGGC TERM 2114 2523906 - 2523941 + G 76 -7.4 -4.56597 | overlap 2523908 GGATGGCAGTGATTG TCCTTGCTGCCGCCCT GGTG GGGGCCGCCGCGAGCA TTTTTGCCAGCAAGG TERM 2115 2524457 - 2524473 + G 82 -10.9 -3.8647 | GCGGGGCTGGTCATG GGGATCA TGC TGATCCC TTTCGTGTCGTCCCT pstC 2523371 - 2524882 + | phosphate ABC transporter, permease protein TERM 2116 2525688 - 2525667 - g 76 -7.3 -4.56775 | ATTCGCGCCGAAAAA CTGGATCAC GGAT GTGATCGAG GTCAATATCTCGAAC pstA 2524879 - 2526243 + | phosphate ABC transporter, permease protein pstB 2526256 - 2527053 + | phosphate ABC transporter, ATP-binding protein phoU 2527058 - 2527768 + | phosphate transport system regulatory protein PhoU phoB 2527774 - 2528463 + | phosphate regulon transcriptional regulatory protein PhoB RD1_2649 2529305 - 2528469 - | hypothetical protein TERM 2117 2528499 - 2528537 + g 73 -4.3 -4.64598 | opp_overlap 2528499, overlap 2528501 2528505 TCTCAGCCCGAGAAT GGCGCGCGCTTCGGCGC AGGTC GCGACGGGGCGTTCGTA TTTTTCACATAATTC TERM 2118 2528501 - 2528535 + g 73 -9.1 -3.93148 | opp_overlap 2528499, overlap 2528499 2528505 TCAGCCCGAGAATGG CGCGCGCTTCGGCGC AGGTC GCGACGGGGCGTTCG TATTTTTCACATAAT TERM 2119 2529487 - 2529471 - H 74 -7.9 -4.11183 | GTTGATTATAAATAA CCGCATC CAA GCTGCGG CAAATTCTAAACTGG RD1_2650 2529548 - 2530540 + | transposase, putative aroQ 2530718 - 2531155 + | 3-dehydroquinate dehydratase TERM 2120 2531212 - 2531191 - T 100 -13.7 -5.64421 | opp_overlap 2531194 ACTTTAAACAAAAAA GGACGCCCC GTCA GGAGCGTCC TTCCGCGCATTCTTG tsf 2532111 - 2531236 - | elongation factor Ts TERM 2121 2531939 - 2531958 + g 84 -10 -4.15788 | gap 1, opp_overlap 2531936 ACAGCCACGAGACCC TCC-GCCGC GGT GCGGCCGGA TTTCTTGGCGGCCTT rpsB 2532975 - 2532193 - | 30S ribosomal protein S2 RD1_2654 2533255 - 2533842 + | hypothetical protein TERM 2122 2533877 - 2533853 - T 79 -12.8 -2.92613 | opp_overlap 2533860 2533861, overlap 2533850 CCTGACGCGAAATCA GGCGGTGTGC CCGCT GCGCACCGCC GTCTCGGCCATCTGC RD1_2655 2534671 - 2533850 - | acyltransferase TERM 2123 2534244 - 2534221 - G 89 -10.4 -4.57073 | gap 1, opp_overlap 2534209 2534230 2534234 GACGCTGCGCAAAAA CCAAAGCTTGC TGC GCA-GCTTTGG CGCGGCTGCGTTCGA RD1_2656 2535432 - 2534668 - | hypothetical protein TERM 2124 2534806 - 2534856 + g 70 -3.9 -4.58395 | overlap 2534793 2534792 GCCCAACCGCAGGTA GGCTTTGATCAGCGACGGCACC-TG CAC CATGGCGGCG-CGCCGGTCGAGGTC TTTTTCGGCAATCAA RD1_2657 2535768 - 2536364 + | hypothetical protein proA 2537729 - 2536464 - | gamma-glutamyl phosphate reductase proB 2538883 - 2537759 - | gamma-glutamyl kinase obgE 2539905 - 2538871 - | GTPase ObgE RD1_2661 2540477 - 2539941 - | acetyltransferase, putative RD1_2662 2541082 - 2540480 - | amino acid transporter LysE TERM 2125 2540784 - 2540769 - G 76 -6 -4.6635 | opp_overlap 2540773, overlap 2540757 AAACCGGCAACAAAA CCGGGC GCCT GCGCGG TCTGCCCTGCCGTGT TERM 2126 2541403 - 2541428 + r 75 -6.1 -4.66833 | opp_overlap 2541402 2541403 ACAATATTCAATAAT CGCATGCCG CCCTGTCA CCGCATGCG TTTTTCCCGTTAAGC TERM 2127 2541673 - 2541650 - R 100 -16 -4.6575 | opp_overlap 2541648 2541667 ACATAAATGAGAAAA GGGACCGGCG GTAA CGCCGATCCC CCTGATTGTGTCATG rpmA 2541973 - 2541704 - | 50S ribosomal protein L27 RD1_2665 2542809 - 2541985 - | fused 50S ribosomal protein L21/unknown domain-containing protein TERM 2128 2542220 - 2542230 + g 75 -8.2 -4.25458 | overlap 2542206 GCCTTCTCGGCTTTT GCCG GAG CGGC TTTCTTGGTGGGCTT TERM 2129 2542628 - 2542644 + g 70 -3.7 -4.63218 | CCAGTCTTGAGGACT GCAAACA TCG TGTTTCC TTTTCTTCCCCGCGC TERM 2130 2542765 - 2542747 - G 79 -8.1 -4.49756 | CGTTAAATAGCAAAA GGATCCG TCGAT CGGACCC CAAAGATGAAGCTGT RD1_2666 2543630 - 2542821 - | hypothetical protein RD1_2668 2544473 - 2543634 - | hypothetical protein RD1_2670 2545377 - 2544856 - | hypothetical protein RD1_2671 2546662 - 2545670 - | hypothetical protein TERM 2131 2545807 - 2545828 + g 74 -5.7 -4.56597 | opp_overlap 2545793 AGGGCACCGGGTCAA GCAGCCCCA GACC TGTGGCCGC TTTTTCCAGCGCCAA TERM 2132 2546687 - 2546701 + H 74 -7.1 -4.2828 | TTTTTCCGGTCAATT GGGCA GAATG TGCCC TTTTCGTCAATGCAG RD1_2672 2546948 - 2547418 + | hypothetical protein TERM 2133 2547491 - 2547463 - f 95 -15.3 -3.25823 | CTGCGCCCAGACCAA GCGACCTGCGC GCGAGAT GCGCAGGCCGC ATCCGCCTGGGCGCG RD1_2673 2547677 - 2548837 + | iron ABC transporter, periplasmic iron-binding protein, putative TERM 2134 2548840 - 2548877 + F 91 -14.3 -3.0169 | gap 1, opp_overlap 2548838, overlap 2548837 GCCGGGCAACTGAGG GTATGCCTGTGGCGGGTG TCA TACCTGCCACAGG-ATGC TGATTTATGACAGTT RD1_2674 2548884 - 2549954 + | iron ABC transporter RD1_2675 2549954 - 2550724 + | Fe-ABC transporter, ATP-binding subunit, putative bcp 2550708 - 2551190 + | pseudoazurin RD1_2677 2551436 - 2551317 - | hypothetical protein TERM 2135 2552158 - 2552179 + Gr 76 -9.4 -3.9712 | GCCATCATCGACGGT GTGGCACC GCTTCA GGTGCCGC TTTATGATACGCTCG RD1_2678 2551435 - 2553387 + | peptidase RD1_2679 2554444 - 2553407 - | hypothetical protein RD1_2681 2555974 - 2554448 - | hypothetical protein TERM 2136 2555094 - 2555108 + g 71 -9.2 -3.82484 | overlap 2555093 TGCGACAGCTTTTCG GGCGGC TCG GCCGTC TTTGCGTTCTGCTGT TERM 2137 2555171 - 2555194 + g 76 -10.3 -3.85114 | CTCCTTGCGCGACAG GGCCTTGGT GGCGCG GCCAAGGCC TTTCGTATCGGATTT TERM 2138 2555196 - 2555206 + g 74 -3.2 -4.7458 | GCGCGGCCAAGGCCT TTCG TAT CGGA TTTCTTTATTCTGGT RD1_2682 2556807 - 2556022 - | hypothetical protein TERM 2139 2556822 - 2556801 - G 73 -10.1 -3.65317 | opp_overlap 2556815, overlap 2556798 2556795 ATGGACAAACCAGAA GCAACACCC GTTC GGGCGTCGC CTCCCAATGTGAGAC RD1_2683 2557063 - 2557671 + | hypothetical protein TERM 2140 2557754 - 2557740 - f 82 -11.4 -3.89346 | TTGCCACTGGATAAA CCTGCG CAC CGCAGG AAGTCTCGAGCAAAA glsA 2558058 - 2558963 + | glutaminase A TERM 2141 2559294 - 2559323 + G 75 -8.5 -4.15044 | gap 1, opp_overlap 2559281 2559282, overlap 2559297 AAGCTGAGCCTGGAT CGACCCGGC-GGCA GCA TGCCAGCCGCGTGG TTTCTTGGCCCAAAA RD1_2685 2559207 - 2561657 + | tyrosine decarboxylase, putative RD1_2686 2561670 - 2562596 + | hypothetical protein TERM 2142 2563109 - 2563086 - g 70 -3.6 -4.63527 | overlap 2563087 TGATCATGCCAAAAA GGGCGTGGCG GCGG CGCGGCGCCT GCAGGAAAAGGTGAA cyaA 2562583 - 2563410 + | adenylate cyclase 1, putative sufS 2564908 - 2563688 - | cysteine desulfurase, putative RD1_2690 2565482 - 2564901 - | hypothetical protein RD1_2691 2565979 - 2565494 - | hypothetical protein TERM 2143 2565941 - 2565919 - G 95 -13.4 -4.11216 | GCCCCAGTGCCAAAA GCCCGGTCAC AAC ACGACCGGGC CCCCTATAGGTAGCG sufD 2567259 - 2565979 - | FeS assembly protein SufD, putative TERM 2144 2567073 - 2567034 - G 72 -2 -4.74801 | gap 1, opp_overlap 2567036, overlap 2567056 2567058 2567059 CAATCTCACCAAAAA GCGGTGC-CTCATCATTGT GAA ACAGTGCCGCGGGCACGGC ATCAGCCTGTGTCAG TERM 2145 2567196 - 2567237 + g 71 -7.2 -4.2231 | gap 1, overlap 2567206 2567231 CGGTCCAACCGCCTT CCGGCAGCGCGAGACGCGC CAACC GCGCCTCTGTCG-TGCTGG TTTTCAGTGCTGCTT sufC 2568014 - 2567259 - | FeS assembly ATPase SufC TERM 2146 2567318 - 2567329 + g 71 -7.2 -4.14472 | CTTCAAGCGCAAGTT CGGG ACCG CCCG TTTTCACGATCTTGC RD1_2695 2568400 - 2568086 - | hypothetical protein sufB 2570028 - 2568490 - | cysteine desulfurase activator complex subunit SufB nifS 2571087 - 2570044 - | cysteine desulfurase TERM 2147 2570458 - 2570432 - G 78 -15.9 -2.62184 | gap 1 CCGGCGTCCAGATCA CGCCGC-GCTGC CTGC GCAGCAGCGGCG AAACCCGCGATTCCA RD1_2700 2571591 - 2571118 - | transcriptional regulator, putative TERM 2148 2571845 - 2571833 - g 73 -4.7 -4.60487 | opp_overlap 2571836, overlap 2571835 2571836 TACCACCCCCAAAAA GAGCG CGA CGCGC CGATTGCGATTATCC TERM 2149 2572016 - 2572038 + G 74 -11.2 -3.50572 | GGGATCGGTGAGCTG TCCGACGCCG CCT CGGCGCTGGA TTATCTGCAATCCAT RD1_2701 2571770 - 2572423 + | hypothetical protein TERM 2150 2572496 - 2572486 - g 71 -8.2 -4.06384 | opp_overlap 2572482 2572480 2572479 CCTCAAGATCATAAA CGCC ACG GGCG ATGATGCTTTCGTGC RD1_2702 2572427 - 2572669 + | hypothetical protein TERM 2151 2573165 - 2573202 + G 76 -9.1 -4.08216 | gap 1, opp_overlap 2573176 2573177, overlap 2573178 GCAGCGTGTGGGCAC GCCTGTG-CAAAGGGGCG CGC CGCGCCTTTGGCAGTGGC TTTTCCCGAAACTGG TERM 2152 2573178 - 2573190 + G 73 -10.5 -3.58536 | opp_overlap 2573176 2573177, overlap 2573165 ACGCCTGTGCAAAGG GGCGC GCC GCGCC TTTGGCAGTGGCTTT RD1_2703 2572662 - 2573249 + | hypothetical protein TERM 2153 2573262 - 2573250 - f 70 -6.9 -4.17316 | opp_overlap 2573250 ATGCCGTCAAAATAA CCGCG CGC CGCAG ATTGGTATACATTTG icd 2573354 - 2574568 + | isocitrate dehydrogenase RD1_2705 2574710 - 2574546 - | hypothetical protein TERM 2154 2574701 - 2574720 + g 70 -10.6 -3.53224 | ATGATTTTTGCGCCG CCCGCGCC ACAT GGCGCAGG TTTCAGGCACCCATC qacE 2574906 - 2575241 + | quaternary ammonium compound-resistance protein TERM 2155 2575713 - 2575691 - g 73 -10.4 -3.60098 | opp_overlap 2575702 ATTCGTCACCTCAAA GGCGCTTGCC CTC GGCCTGCGCC CGATTGTTGTGCTGA TERM 2156 2576627 - 2576614 - g 70 -3.7 -4.64763 | opp_overlap 2576621, overlap 2576616 TGATCGAAAAAATAA CAGGC ACGC GCCGG GGGGAGCTTGTCGAG typA 2575353 - 2577170 + | GTP-binding protein TypA, putative RD1_2708 2577500 - 2577213 - | hypothetical protein TERM 2157 2577409 - 2577443 + g 84 -9.9 -4.19704 | opp_overlap 2577400, overlap 2577411 ATGAAATGGCCGCCA TGCGCGGCAATCGCC TCTGT GGCGAGGGCTGCGTA TTTTCCATAGGCTTC TERM 2158 2577411 - 2577441 + g 73 -10.3 -3.69483 | opp_overlap 2577400, overlap 2577409 GAAATGGCCGCCATG CGCGGCAATCGCC TCTGT GGCGAGGGCTGCG TATTTTCCATAGGCT alaS 2580162 - 2577505 - | alanyl-tRNA synthetase TERM 2159 2579687 - 2579643 - G 74 -5.6 -4.53303 | gap 1, opp_overlap 2579642 CATGGTCATAGAAAA TCTCGGTGCAGGGGCC-ACAG GGTC CCGTCGGCCCCATCATCCAGA AATTGTCATTCGTGG TERM 2160 2580277 - 2580255 - R 93 -11.3 -4.39571 | gap 1 CGCATAAATGGAAAA GGGCGCAGCC GGTT GG-TGCGCCC TTGAAATGCGGGTGT recA 2581388 - 2580309 - | recombinase A TERM 2161 2581439 - 2581451 + r 75 -6.9 -4.3953 | AGCAATCGTTGCCGA CGCGC TCT GTGCG TTTGTTCTCATTACG TERM 2162 2581454 - 2581492 + r 71 -8.2 -3.87583 | overlap 2581485 CGCGCTCTGTGCGTT TGTTCTCATTACGTTCCT TAT GGGACCAAAATGAGAACA TTTCAATTTAAATTT RD1_2711 2583958 - 2581628 - | sensor kinase-like protein, putative TERM 2163 2582581 - 2582567 - G 71 -7.8 -4.07568 | opp_overlap 2582576, overlap 2582575 CTGTTTGCGCGAAAA GGCCAA AAG CTGGCC GACCAGCGCCGCGGC TERM 2164 2582588 - 2582575 - G 75 -8.1 -4.28049 | opp_overlap 2582576, overlap 2582567 GCGAAAAGGCCAAAA GCTGG CCGA CCAGC GCCGCGGCCCGGTTT TERM 2165 2583164 - 2583154 - G 75 -8.2 -4.2074 | overlap 2583155 GCGGCAACAGATAAA GCGC CTT GCGC CCTGCCCCGGCGGAT RD1_2712 2585191 - 2584031 - | NOL1/NOP2/sun family protein, putative guaB 2586670 - 2585222 - | inosine-5'-monophosphate dehydrogenase TERM 2166 2586980 - 2586995 + G 74 -11.8 -3.53811 | opp_overlap 2586979 2586978 2586975 TGGCGGAACACAATG GCGCGC AGGG GCGCGC TTTGGCCCGCGTGGG RD1_2715 2586831 - 2587817 + | agmatinase, putative RD1_2716 2587966 - 2590014 + | hypothetical protein RD1_2718 2590338 - 2590820 + | hypothetical protein pgi 2592409 - 2590817 - | glucose-6-phosphate isomerase pgl 2593077 - 2592406 - | 6-phosphogluconolactonase zwf 2594544 - 2593081 - | glucose-6-phosphate 1-dehydrogenase RD1_2724 2594716 - 2595663 + | radical SAM domain-containing protein RD1_2725 2595982 - 2595677 - | Usg-like family protein TERM 2167 2596026 - 2596059 + H 78 -11.7 -3.18199 | opp_overlap 2596017 2596015 2596057 ACAATATGTTGGCAC TTGGCTGCGGTGGCT GCCA AGCCGCAGCAGACAA TTGGATTGCACCTTA TERM 2168 2597846 - 2597807 - g 80 -11.4 -3.83026 | gap 1, overlap 2597811 GGTGGCTACATCAAA CG-CACGCCGCTCGCCG ATTTCCG CAGCCAGCGGCGCGGCG GCAAGGGTCTGTCAG gyrA 2596178 - 2598895 + | DNA gyrase subunit A cxp 2600602 - 2599124 - | thermostable carboxypeptidase, putative RD1_2728 2601753 - 2600605 - | cytochrome c oxidase assembly protein, putative TERM 2169 2601355 - 2601344 - G 72 -2.2 -4.77165 | CTGCGCACAAGAAAA TAGC CAAA GCCA AGCGCCCAGACCACG rrm2 2602571 - 2601816 - | RNA methyltransferase thiE 2602717 - 2603337 + | thiamine-phosphate pyrophosphorylase, putative RD1_2731 2604533 - 2603340 - | hypothetical protein RD1_2732 2604532 - 2605344 + | hypothetical protein RD1_2733 2605396 - 2606289 + | pfkB family kinase, putative RD1_2734 2606286 - 2607218 + | hypothetical protein RD1_2735 2607300 - 2608016 + | hypothetical protein TERM 2170 2608012 - 2607998 - T 71 -11.4 -2.88737 | opp_overlap 2607997, overlap 2607997 CAAGGATGAGCAAAG GCCTGC CGG GCAGGC GTAATTACTGGAACA RD1_2736 2609054 - 2608017 - | patatin family phospholipase TERM 2171 2608625 - 2608610 - G 71 -5.4 -4.34402 | gap 1, opp_overlap 2608609 2608610 TTGCGCACACGAAAA GGC-AGG GAC CCTTGCC GTTTTCTGCACACAC TERM 2172 2609013 - 2609001 - G 73 -10.5 -3.66378 | CACACCCCAGGTAAA CGCGC CAT GCGCG CCTCCGCCCTGAAGT bdhA 2609915 - 2609130 - | D-beta-hydroxybutyrate dehydrogenase RD1_2740 2610074 - 2609934 - | hypothetical protein TERM 2173 2610066 - 2610084 + g 72 -11.7 -3.28745 | opp_overlap 2610066, overlap 2610061 CCCAAATAAAAAAAA CGCCTGC ACAAG GCAGGCG TTGAGTTATTGAGGC TERM 2174 2610084 - 2610066 - G 100 -11.7 -6.23545 | opp_overlap 2610066 2610061 CCCAAATAAAAAAAA CGCCTGC ACAAG GCAGGCG TTGAGTTATTGAGGC RD1_2741 2610248 - 2612065 + | ABC transporter, periplasmic substrate-binding protein, putative RD1_2742 2612689 - 2612066 - | transcriptional regulator RD1_2743 2612755 - 2614287 + | hypothetical protein RD1_2744 2614265 - 2614906 + | DSBA-like thioredoxin domain-containing protein TERM 2175 2614937 - 2614923 - f 71 -4.2 -4.62471 | overlap 2614931 2614932 GGTAATGTGCAAAAA TGCGAC AAT GCCACA CCAAGTGGCGATTGA TERM 2176 2615101 - 2615111 + G 85 -6.8 -4.7629 | ATGGCGATGATGTTT GCGA CAA TCGC TTTTTCGATTGATGC TERM 2177 2615495 - 2615509 + G 71 -9.2 -3.84406 | overlap 2615492 TTGTGCCAGCCTTTG CGCCCG CCA TGGGCG TTGTTATCATCCACG TERM 2178 2616221 - 2616258 + G 71 -7 -4.21141 | gap 1, opp_overlap 2616245, overlap 2616222 2616240 TGATGATGTATATGG CGCGGGTTGAGGCGC GCGCGCAAA GCGCCT-AGCCCGCC TTTGCTTTCTTGCGC RD1_2745 2615032 - 2616252 + | MFS permease protein, putative mfd 2619713 - 2616249 - | transcription-repair coupling factor RD1_2747 2620274 - 2619747 - | hypothetical protein TERM 2179 2620271 - 2620283 + g 85 -3.3 -5.40873 | opp_overlap 2620269, overlap 2620272 TGCTGCTGTAAAGGT CCACG AGA CGTGC TTTTCTTTTTGTCTT hemB 2620395 - 2621393 + | delta-aminolevulinic acid dehydratase RD1_2750 2621504 - 2622070 + | hypothetical protein TERM 2180 2622116 - 2622082 - T 71 -4.9 -4.64766 | gap 1, overlap 2622084 2622086 2622087 CTGACACCCGAAAAA TACATTCAGGGCGCGC CGGA ACGCGCCCTGAG-GCC CCGTTACCCCAAGGC TERM 2181 2622114 - 2622084 - T 80 -9.7 -3.93817 | gap 1, overlap 2622082 2622086 2622087 GACACCCGAAAAATA CATTCAGGGCGCGC CGGA ACGCGCCCTGAG-G CCCCGTTACCCCAAG TERM 2182 2622113 - 2622086 - T 89 -13.4 -3.54926 | overlap 2622084 2622082 2622087 CACCCGAAAAATACA TTCAGGGCGCGC CGGA ACGCGCCCTGAG GCCCCGTTACCCCAA TERM 2183 2622112 - 2622087 - T 90 -16.9 -2.72233 | overlap 2622086 2622084 2622082 ACCCGAAAAATACAT TCAGGGCGCGC CGGA ACGCGCCCTGA GGCCCCGTTACCCCA RD1_2751 2622992 - 2622120 - | 3-hydroxyisobutyrate dehydrogenase, putative TERM 2184 2622829 - 2622884 + g 71 -8 -4.08945 | gap 1, opp_overlap 2622817 2622815, overlap 2622874 TCAGCACCTGCGGCA GCCTTGGCCGGTGTGGGTGC-CATGGC CCC GCCATGCGCCGCGACCCAGGCCTCGGC TTTTGCAGCGGTCCT acy 2623092 - 2625557 + | penicillin acylase, putative RD1_2753 2625558 - 2626121 + | RNA pseudouridylate synthase hflX 2627420 - 2626122 - | GTP-binding protein HflX, putative hfq 2627656 - 2627417 - | RNA-binding protein Hfq TERM 2185 2627770 - 2627754 - R 71 -4.3 -4.59773 | overlap 2627756 TTCCAGCCCTAAAAA CAGTCCG TTA CGGACCT AACCGTTCAATCGCT TERM 2186 2627768 - 2627756 - R 73 -9.1 -3.91506 | overlap 2627754 CCAGCCCTAAAAACA GTCCG TTA CGGAC CTAACCGTTCAATCG trkH-2 2629338 - 2627785 - | Trk system potassium uptake protein TERM 2187 2628057 - 2628039 - G 76 -5.3 -4.62069 | overlap 2628051 TCGTCATGGCAAAAA GCATGAA GAAAA TCCATGC GATGAAGGCCCCGTT TERM 2188 2628063 - 2628051 - G 72 -2.7 -4.76123 | overlap 2628039 AAAGCATGAAGAAAA TCCAT GCG ATGAA GGCCCCGTTTCGCTG trkA 2630719 - 2629343 - | potassium transporter peripheral membrane component TERM 2189 2629888 - 2629919 + g 95 -7 -5.47218 | overlap 2629889 CGATGGTACGCTCCA ACGCCTCGGCGGCG CGTT CGGCGCAGTGGCGG TTTTTTTCAATGACC TERM 2190 2629889 - 2629918 + g 78 -10.5 -3.87608 | overlap 2629888 GATGGTACGCTCCAA CGCCTCGGCGGCG CGTT CGGCGCAGTGGCG GTTTTTTTCAATGAC RD1_2758 2630758 - 2631294 + | hypothetical protein TERM 2191 2632145 - 2632175 + G 80 -3.9 -5.08824 | gap 1, overlap 2632145 2632146 GCTGAACGGCCATCT GT-GCCGCATGGCC GAGG GGACATACGGCGGC TTTTTTGGCTGGCCA RD1_2759 2631348 - 2632385 + | hypothetical protein ntrX 2633881 - 2632469 - | nitrogen assimilation regulatory protein ntrY 2636132 - 2633874 - | nitrogen regulation protein ntrY, putative ntrC 2637598 - 2636234 - | nitrogen regulation protein TERM 2192 2636272 - 2636282 + g 90 -5.4 -5.252 | TCACCTCTATATCCA GATC GGT GATC TTTTTTCTGAGCGTA TERM 2193 2636881 - 2636858 - G 73 -9.4 -3.85698 | overlap 2636859 GCTGGTGGCCAGAAA GCGCGGGGCG TATT CGCCCGGCGA ATCCATCATGCGCAC TERM 2194 2636880 - 2636859 - G 70 -12.9 -2.91276 | overlap 2636858 CTGGTGGCCAGAAAG CGCGGGGCG TATT CGCCCGGCG AATCCATCATGCGCA ntrB 2638690 - 2637611 - | nitrogen regulation protein NtrB TERM 2195 2637938 - 2637950 + g 70 -3.3 -4.58283 | CGGCGCACTGCCCGC CGCTT CAG ACGCG TTTTTAAGCAGGTTC RD1_2765 2639670 - 2638687 - | tRNA-dihydrouridine synthase ispD 2639848 - 2640513 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative ispF 2640503 - 2640982 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 2196 2641377 - 2641345 - g 73 -10.4 -3.59262 | opp_overlap 2641367 TTTGATATCTGGAAA CCCGGTCCGGTCGG GTGGG CCGATCGGCGCGGG GACGCGCTGGGTGTG pgpA 2640979 - 2641473 + | phosphatidylglycerophosphatase A cinA 2641475 - 2641942 + | competence/damage-inducible protein CinA, putative RD1_2770 2642397 - 2641939 - | hypothetical protein hpt 2642466 - 2643011 + | hypoxanthine phosphoribosyltransferase RD1_2772 2643324 - 2643076 - | hypothetical protein lipA 2644346 - 2643393 - | lipoyl synthase TERM 2197 2643819 - 2643838 + g 70 -10 -3.53811 | gap 1, opp_overlap 2643815 2643818 2643817 GTGGTTAAAGACATC CGGTCG-CG CCG CGACGACCG TTTCCAGCGCCTCGG TERM 2198 2644100 - 2644089 - G 74 -5.8 -4.50976 | TGCGATATTACAAAA CGTG CAGG CACG GGTGCAAACCTCGCC TERM 2199 2644292 - 2644304 + g 78 -6.9 -4.59773 | overlap 2644289 2644287 TTGGCTGTGGGCTGT CGGCG CGG CGCTG TTTTTCCGGATGGCG RD1_2774 2645055 - 2644444 - | hypothetical protein RD1_2775 2646429 - 2645245 - | hypothetical protein RD1_2776 2646693 - 2647043 + | hypothetical protein RD1_2777 2648619 - 2647036 - | trimethylamine methyltransferase family protein TERM 2200 2647486 - 2647468 - G 72 -11 -3.30124 | opp_overlap 2647470 GTTCACGCCCGACAA CAGCCCCA TGT TGAGGCTG TTCGAGGTCTCATAT TERM 2201 2648008 - 2648040 + g 75 -7.7 -4.15222 | CGGTTTATCGCTGAG CGTCATATGCGCATG CAG CATGTCCAGATGGCG TTTGTTCACGGCAAT TERM 2202 2648728 - 2648706 - H 83 -7.6 -4.59853 | TCAATCGTTGAAAAA GAGGCCCCGG CGG CCAAAGCCCC CGCAATCTCAGGCTT TERM 2203 2649768 - 2649731 - g 78 -10.7 -3.86015 | gap 1, opp_overlap 2649744, overlap 2649733 2649734 2649744 GAGGTTTTCGAGAAA TACGCGAAGGAAATCGGC GGT GCCGATTTCCTG-GCACA GGGCACGCTCTACCC TERM 2204 2649766 - 2649733 - g 74 -11.1 -3.51934 | gap 1, opp_overlap 2649744, overlap 2649731 2649734 2649744 GGTTTTCGAGAAATA CGCGAAGGAAATCGGC GGT GCCGATTTCCTG-GCA CAGGGCACGCTCTAC TERM 2205 2649756 - 2649744 - g 73 -9.1 -3.93026 | opp_overlap 2649744, overlap 2649734 2649733 2649731 AATACGCGAAGGAAA TCGGC GGT GCCGA TTTCCTGGCACAGGG TERM 2206 2649744 - 2649756 + G 71 -9.1 -3.72576 | opp_overlap 2649744 2649734 2649733 2649731 AATACGCGAAGGAAA TCGGC GGT GCCGA TTTCCTGGCACAGGG guaA 2648777 - 2650345 + | bifunctional GMP synthase/glutamine amidotransferase protein RD1_2779 2650386 - 2651249 + | integral membrane protein, putative TERM 2207 2651807 - 2651842 + G 71 -5.5 -4.39002 | opp_overlap 2651827, overlap 2651809 CCGTTTATGGCGGTC TG-CGTCTGCAATCCGC AGAA GCCGAT-GCGGACGTCA TTTTCTCCAACGTTT RD1_2780 2651383 - 2652504 + | long-chain fatty acid protein, putative TERM 2208 2652528 - 2652554 + G 100 -16.5 -4.86731 | opp_overlap 2652515 GACAGTGCATTTGAA CGCCCGCCCGG ACATC CCGCGCGGGCG TTTTCTTTGCGCAGG RD1_2781 2652517 - 2652615 + | hypothetical protein TERM 2209 2653292 - 2653320 + G 76 -8.7 -4.02719 | CATCGGGTATTATGC GCTGATCGGCACC GCG GGGGCCTATCTGC TTTACTATTTCGTCC RD1_2782 2652612 - 2653523 + | transmembrane drug/metabolite transporter family protein, putative TERM 2210 2653989 - 2654004 + G 70 -10.4 -3.53012 | opp_overlap 2653980 CTGAAATCGCCGCCC TGCGCG ACAC CGCGCA TTTCGCAAAACGCGC RD1_2783 2653601 - 2654449 + | hypothetical protein metA 2654541 - 2655458 + | homoserine O-succinyltransferase RD1_2785 2655442 - 2656422 + | hydrolase, putative TERM 2211 2656972 - 2657013 + GF 80 -11.7 -3.35996 | opp_overlap 2656980 GCGCAGGTGACGCCC TTTGAACAGATGCTCGTCG AGGA CAACGTCCATCTGTTCAAA TTCTGGCTCAACGTG RD1_2786 2656471 - 2657340 + | polyphosphate kinase 2 domain-containing protein TERM 2212 2657467 - 2657449 - gf 75 -11.6 -3.35224 | overlap 2657447 AGAGGCCGCGAAACA GGCGGGCG TCA CTCCCGCC GCCGTCTACCGCCAT RD1_2787 2657300 - 2657956 + | TetR family transcriptional regulator RD1_2789 2658347 - 2658961 + | ExoD family exopolysaccharide synthesis protein RD1_2790 2658946 - 2659413 + | disulfide bond formation protein, putative TERM 2213 2659477 - 2659515 + T 71 -11.7 -2.50113 | gap 2, opp_overlap 2659476, overlap 2659476 CTCCCAGCATGGAAT GCGCCGGCGTG--CCGGCG CGC CGCTGGATCATTCCGGCGC CTTGGTCACATCGTA RD1_2791 2660664 - 2659504 - | monooxygenase, putative TERM 2214 2660395 - 2660370 - G 74 -3.2 -4.82901 | CCCGGTGGACAAAAA GATACCGCTG CCCCTC CAGCCGTGTC AGATCGAGCCGCGCA TERM 2215 2660685 - 2660706 + r 70 -10.1 -3.34398 | opp_overlap 2660685, overlap 2660683 CTTCTCCAAAAAAAA TGCCGAAGC ATGT GCTCCGGCA TATTTAAAACAAAAC TERM 2216 2660706 - 2660685 - R 100 -12.3 -5.75342 | opp_overlap 2660683 2660685 CTTCTCCAAAAAAAA TGCCGAAGC ATGT GCTCCGGCA TATTTAAAACAAAAC TERM 2217 2660744 - 2660721 - R 74 -2.4 -5.11836 | gap 1, overlap 2660740 ATATTTAAAACAAAA CGACGTTCAGA TGA TC-AATCGTCG CGATGCACTTTCTCG dksA 2661157 - 2660735 - | dnaK suppressor protein TERM 2218 2661669 - 2661652 - g 81 -5.5 -4.72986 | GAGGCCGAGGAAAAA GTCGTTC TGCT GATCGAC GAAGTGGACAAGGCC RD1_2793 2661301 - 2662164 + | ATPase, AAA family protein, putative RD1_2794 2662278 - 2662733 + | acetyltransferase RD1_2795 2662730 - 2664094 + | hypothetical protein RD1_2796 2664329 - 2665516 + | hypothetical protein RD1_2797 2665596 - 2666291 + | M48 family peptidase putative RD1_2798 2667011 - 2666472 - | hypothetical protein RD1_2799 2668239 - 2667016 - | hypothetical protein TERM 2219 2667514 - 2667503 - G 76 -5.8 -4.65895 | overlap 2667507 GCGGCCAGCGAAAAA CCAC CAAC GTGG CTGAAGACATCCAAG TERM 2220 2668205 - 2668215 + g 73 -4.6 -4.58395 | overlap 2668203 GTGGGCAGATCACCG GCGG GGG CTGC TTTTTCAGGAATGGA RD1_2801 2668603 - 2668334 - | hypothetical protein glnE 2671392 - 2668600 - | glutamate-ammonia-ligase adenylyltransferase TERM 2221 2668651 - 2668680 + g 91 -7.9 -4.86731 | gap 1, opp_overlap 2668650 CACCATCGACAGTAT CTGATCGCAGCGCT GGT AGCTTTGCG-TCAG TTTTGTTTCAAGAAC TERM 2222 2668797 - 2668785 - G 70 -4.7 -4.57353 | overlap 2668786 2668787 GCTGATCAGACAAAA GCCGC ACG GCGGT GTGCAGGTTGGCAAA TERM 2223 2669236 - 2669197 - G 73 -9.8 -3.56643 | gap 1, opp_overlap 2669210 CTGATAGCTCTGAAA CGCGGGCCAACTGGTGGCC ACC GGCC-CCTGATTGCCCGAG GGGCGCAGCCGCATA TERM 2224 2669330 - 2669346 + g 78 -6.5 -4.67982 | opp_overlap 2669331, overlap 2669331 AAGCGCGCGTAATAA ACCCTTG ATG CAAGGGG TTTTCTTCCATCCGA TERM 2225 2669345 - 2669331 - G 84 -10 -4.15222 | opp_overlap 2669331 2669330 AGCGCGCGTAATAAA CCCTTG ATG CAAGGG GTTTTCTTCCATCCG RD1_2803 2671669 - 2672088 + | hypothetical protein RD1_2804 2672155 - 2672595 + | RD1_D family protein ate 2672621 - 2673481 + | arginyl-tRNA-protein transferase TERM 2226 2673583 - 2673598 + T 93 -11.8 -4.29738 | opp_overlap 2673583 CTGCCCCAATAAAAA GGGGGC CAAG GCCCCC TTTTGATGGCTGTCC TERM 2227 2673598 - 2673583 - T 100 -11.8 -5.06414 | opp_overlap 2673583 CTGCCCCAATAAAAA GGGGGC CAAG GCCCCC TTTTGATGGCTGTCC RD1_2806 2675976 - 2673622 - | TRAP transporter, DctM subunit, putative RD1_2807 2676716 - 2676039 - | hypothetical protein RD1_2809 2678183 - 2677095 - | periplasmic mannitol-binding protein, putative TERM 2228 2679632 - 2679578 - g 74 -12.7 -3.20348 | gap 1, overlap 2679573 CTCACGAATATCGAA CGCCATGCGCGCG-CCACGCGGGTCA GCGT TGATCTGCGCGGTCACGCGCGCGGTG CGACGCTGCGGATTG degS 2678435 - 2679868 + | sensor protein degS degU 2679865 - 2680515 + | transcription regulatory protein degU, putative TERM 2229 2680897 - 2680917 + F 100 -11.1 -5.24129 | opp_overlap 2680856 2680855 TAGTCTGACCCATGC GCCCCCG CCAAGAC CGGGGGC TTTTTTGTGCGCAAA ilvB 2680972 - 2682723 + | acetolactate synthase 3 catalytic subunit TERM 2230 2683056 - 2683044 - g 91 -4.8 -5.54079 | CTAAAAATCAAAAAA GGCT CCAAC AGCC ATTCCGCCTATAACC ilvH 2683020 - 2683580 + | acetolactate synthase 3 regulatory subunit TERM 2231 2683605 - 2683621 + T 81 -12.3 -3.48924 | opp_overlap 2683605 CCGATACCTTATGAA CAGGCCA CCT TGGCCTG TTCTGTCCACGGTGA TERM 2232 2683621 - 2683605 - T 78 -12.3 -3.17763 | opp_overlap 2683605 CCGATACCTTATGAA CAGGCCA CCT TGGCCTG TTCTGTCCACGGTGA RD1_2814 2683930 - 2683598 - | hypothetical protein TERM 2233 2684011 - 2684000 - H 90 -5.8 -5.23316 | opp_overlap 2683999, overlap 2683983 GATGACACCAAAAAA GTGC CACC GCAC GCTTGGTTTTTGTGT RD1_2815 2684165 - 2684962 + | DNA-binding protein, putative RD1_2816 2685068 - 2686228 + | Rieske (2Fe-2S) domain-containing protein RD1_2817 2686228 - 2686443 + | hypothetical protein RD1_2818 2687300 - 2686539 - | hypothetical protein prfB 2688520 - 2687396 - | peptide chain release factor 2 TERM 2234 2688455 - 2688478 + g 87 -10.2 -4.42491 | overlap 2688456 GGTTTCCACATCCAG CCGCTGGGCC AGAA GGTCCAGCGA TTTCTGTATTTTTTC TERM 2235 2688456 - 2688477 + g 78 -13.7 -3.23055 | overlap 2688455 GTTTCCACATCCAGC CGCTGGGCC AGAA GGTCCAGCG ATTTCTGTATTTTTT mrcA 2691161 - 2688606 - | penicillin-binding protein 1A amiC 2692471 - 2691254 - | N-acetylmuramoyl-L-alanine amidase, putative TERM 2236 2692191 - 2692177 - G 70 -4.9 -4.56775 | opp_overlap 2692187, overlap 2692189 AGCCGGGCTGAAAAA CGCCG AAACG CAGCG CGTTGATGCTGGTCT aspB 2693675 - 2692533 - | aspartate aminotransferase, putative TERM 2237 2692756 - 2692743 - GH 73 -4.5 -4.64844 | gap 1, opp_overlap 2692750 CGCATAGACATAAAA CGCTCC ATC GG-GCG GCGCGATCTTCGTGA RD1_2823 2693674 - 2695029 + | M48 family peptidase putative TERM 2238 2695156 - 2695129 - g 76 -10.6 -3.77588 | gap 1, opp_overlap 2695127 ATGTCAGATGAAGAA CGCGCA-CAGTTC GGC GAACAGGTGCGCG CCTATCTGATGGAAA RD1_2824 2695033 - 2695782 + | outer membrane protein, putative TERM 2239 2695791 - 2695774 - T 95 -8.4 -5.06816 | opp_overlap 2695774 ATCGTTGAAGAAAAA CGCGGT TGATCG ACCGCG TTATTCGGCCGCATC TERM 2240 2695774 - 2695791 + T 70 -9.1 -3.61715 | opp_overlap 2695774 ATCGTTGAAGAAAAA CGCGGTT GATC GACCGCG TTATTCGGCCGCATC TERM 2241 2695813 - 2695840 + T 100 -11.3 -5.42259 | gap 1 GGCCGCATCCGCATG GGCTGCCGCAGC CTCAA GCT-CGGCGGCC TTTTTTTCGACCTGC ispG 2696952 - 2695792 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase RD1_2826 2698253 - 2697009 - | hypothetical protein TERM 2242 2698325 - 2698308 - R 87 -8.5 -4.65895 | opp_overlap 2698307 2698311 GTCGTCAGTGAAAAA GAATCGT CCCC ACGATTC GTATCTGACTTGTTG hemA 2699612 - 2698389 - | 5-aminolevulinate synthase TERM 2243 2700336 - 2700317 - g 70 -4.2 -4.45544 | gap 1, opp_overlap 2700328 2700331, overlap 2700319 2700320 CTTCATGAAGGAAAA CAGCGACAC GTT GCG-CGCCG ATCTGGCGCTGATCT TERM 2244 2701081 - 2701056 - g 70 -3.2 -4.66938 | overlap 2701057 ATCCTGAACACAAAA CCCCTGCTGA TCGGAT TCGGCAAGGA TGATGATGCGATACA RD1_2828 2699808 - 2701178 + | hypothetical protein dehH1 2701178 - 2702050 + | haloacetate dehalogenase H-1, putative TERM 2245 2702160 - 2702176 + T 74 -10.8 -3.54741 | opp_overlap 2702160 AGTGCACATGAAAAA GGCCCC ACGAG GGGGCC TTTCGAGCAGTGATG TERM 2246 2702176 - 2702160 - T 100 -10.8 -4.80882 | opp_overlap 2702160 AGTGCACATGAAAAA GGCCCC ACGAG GGGGCC TTTCGAGCAGTGATG RD1_2831 2703328 - 2702390 - | pirin domain-containing protein RD1_2832 2703855 - 2703481 - | hypothetical protein TERM 2247 2704143 - 2704156 + r 71 -8.1 -3.86897 | ATCGACCCGACACGG CACGC AATT GCGTG TTTGTGCCCCGTCAA TERM 2248 2704427 - 2704442 + r 76 -11.8 -3.14564 | opp_overlap 2704422 GGACAGTATATGTAC CCCGGC CATT GCCGGG TTCCTCCCAGCCTGA RD1_2834 2705256 - 2704687 - | phosphoglycerate mutase, putative TERM 2249 2704753 - 2704725 - G 100 -12.3 -4.323 | opp_overlap 2704724, overlap 2704728 CGGAAAGATGGAAAA CAACGCCCTGCCC GCC GGGCAGGTCGGCG ATCTCATGCGTCTCC TERM 2250 2704750 - 2704728 - G 100 -14.8 -4.2651 | opp_overlap 2704724, overlap 2704725 AAAGATGGAAAACAA CGCCCTGCCC GCC GGGCAGGTCG GCGATCTCATGCGTC RD1_2835 2705767 - 2705465 - | hypothetical protein TERM 2251 2705600 - 2705626 + g 91 -5.9 -5.33866 | gap 1, opp_overlap 2705602 TTTTGTCTCTGCATA GACCTCG-CGAA TCTG TTCGGCGATGTC TTTTTTCTCGCTTTC RD1_2836 2706208 - 2706432 + | hypothetical protein TERM 2252 2706474 - 2706460 - f 72 -11.4 -3.01791 | ACCCGGCCCGGAAGA CGCGTC GCT GACGCG CGCCGAAGCTGAAAC RD1_2837 2706579 - 2707004 + | hypothetical protein RD1_2838 2708169 - 2707021 - | hypothetical protein RD1_2839 2710979 - 2708295 - | sensor histidine kinase, putative RD1_2840 2711266 - 2710985 - | hypothetical protein RD1_2841 2711654 - 2711271 - | response regulator receiver domain-containing protein RD1_2842 2713124 - 2711835 - | transcriptional regulator, putative TERM 2253 2713198 - 2713214 + H 71 -8 -3.91716 | opp_overlap 2713197, overlap 2713208 2713212 AAATTTACAAACACC CTGCAC TATTT GTGCAG TTATTTACAAAATAA RD1_2843 2713364 - 2714716 + | branched-chain amino acid ABC transporter, periplasmic binding protein, putative TERM 2254 2714759 - 2714735 - f 95 -14.2 -3.30572 | overlap 2714733 2714731 CAACCAAAACACATA CCGGGCGGCG GCACT CGCCGTCCGG CCTTCCCGTGATACG RD1_2844 2714804 - 2715835 + | branched-chain amino acid ABC transporter, permease protein, putative RD1_2845 2715840 - 2717039 + | branched-chain amino acid ABC transporter, permease protein, putative RD1_2846 2717052 - 2717816 + | branched-chain amino acid ABC transporter, ATP-binding protein TERM 2255 2717963 - 2717979 + G 80 -10.1 -4.07568 | CTTTAACGTCCATGA GGGCGAG ATC CTTGCCC TTTTGGGGCGCAACG RD1_2847 2717829 - 2718584 + | branched-chain amino acid ABC transporter, ATP-binding protein, putative RD1_2848 2719468 - 2718710 - | pyrroline-5-carboxylate reductase, putative TERM 2256 2718885 - 2718903 + g 70 -12.4 -2.87211 | opp_overlap 2718884 2718885 AGCGCCGCCAGAAAC CCCGCCAG CAA CTGGTGGG TGTATCGCGCCGCCT TERM 2257 2719091 - 2719078 - G 71 -8.1 -4.10007 | opp_overlap 2719047 ACAACGCGCGCAAAA CCCTG TCGT CAGGG CACGCAGGCAAGGGG RD1_2849 2721062 - 2719557 - | AMP-binding domain-containing protein TERM 2258 2720018 - 2720034 + g 71 -6.5 -4.2558 | CTCCGTGTTCTCCGA CGGTGAG CGG CTTGCCG TTTTCGTCCCCAATC TERM 2259 2720407 - 2720391 - G 71 -9.3 -3.73775 | opp_overlap 2720384, overlap 2720392 TTCATCGGGATCAAA GCCCCCC GAG GGCGGGC AAACGTGGCGCGCCC TERM 2260 2720954 - 2720933 - G 71 -7.9 -4.07885 | gap 1, overlap 2720934 2720937 CACCCTGCGCCAAAA GCCAGC-CCG CCA CGGCGCGGGC ATCGCGCCAGAACTG TERM 2261 2721021 - 2721005 - G 100 -9.3 -4.87665 | opp_overlap 2721004 CTGTACCGAGAAAAA GCGCGGG TCG CCCGGGC GTGATCTGCGCCTGT accB 2721214 - 2721696 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein, putative accC 2721708 - 2723060 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 2262 2723171 - 2723201 + G 93 -14.6 -3.88766 | TTTCTGGGTTGATCC CCTGCGCCGGGGCA TCA TGCCGCTGCGCGGG TTTCATATGTCCCGT TERM 2263 2723425 - 2723438 + G 77 -3.7 -5.00616 | GGGTCTACGGGGTTA CGCTG GGGG CTGCG TTTTTTGGCGAAAGC TERM 2264 2723633 - 2723609 - g 71 -5.5 -4.4261 | opp_overlap 2723624, overlap 2723603 2723611 GGCGCAATACCAAAA GCGGCTTCAGG AAG CCTGCGCCCGC CCGGCCAGTTTTCTC aat 2723073 - 2723705 + | leucyl/phenylalanyl-tRNA--protein transferase RD1_2853 2724028 - 2723669 - | hypothetical protein RD1_2854 2724471 - 2724025 - | mce-related protein, putative RD1_2855 2724860 - 2724477 - | NADH dehydrogenase RD1_2856 2725304 - 2724942 - | endoribonuclease L-PSP family protein, putative TERM 2265 2725407 - 2725391 - R 83 -7.2 -4.66609 | opp_overlap 2725391 2725393 GATCTTACGGAAAAA CAGGGC TCAGT GCCCCG TTTTCATGATGGGGC clpX 2726700 - 2725435 - | ATP-dependent protease ATP-binding subunit clpP 2727465 - 2726839 - | Clp protease, putative TERM 2266 2728745 - 2728761 + Gr 90 -5.8 -5.15969 | ACCGAATGACCTGGC CCCATG CAACC CGTGGG TTTTTTCCGTTCAAA RD1_2859 2727412 - 2728818 + | deoxyribodipyrimidine photo-lyase, putative lacK 2730126 - 2729068 - | lactose ABC transporter, ATP-binding protein RD1_2861 2730922 - 2730131 - | IclR family transcriptional regulator RD1_2862 2731154 - 2732413 + | ABC transporter, substrate-binding protein, putative TERM 2267 2732794 - 2732813 + G 70 -4.9 -4.55697 | TGGCTGCTGTTTTAT CTGCTGG CCATTC CCGGCGG TTTATTTATCGCGCT RD1_2863 2732512 - 2733438 + | sugar ABC transporter, permease protein, putative RD1_2864 2733507 - 2734355 + | ABC transporter, permease protein, putative TERM 2268 2734381 - 2734397 + G 76 -13.7 -3.05596 | opp_overlap 2734360 2734356 GCGGCTGGATGACGC GCGCCAG ACG CTGGCGC TTGCCTCGACAAATG TERM 2269 2734928 - 2734912 - g 71 -7.9 -4.09685 | CCGCATGCGCGAAAA CCGCACG GGG CGCACGG GCCACGAACATTTCC TERM 2270 2735306 - 2735331 + G 71 -8.9 -3.79747 | gap 1, opp_overlap 2735298 AAGGATATCGCCAGC CGCGCCGCCGCC CTT GGTG-CGGAGCG TTTCGTGCTGGATGA TERM 2271 2736178 - 2736158 - g 89 -12.5 -4.03219 | opp_overlap 2736150 2736158 ATCGCAGAACAACAA CTGGCGCGC GAC GGGCGCCAG TTCGTAGCCTTTGTG TERM 2272 2736158 - 2736178 + G 74 -12.5 -3.21194 | opp_overlap 2736158, overlap 2736150 ATCGCAGAACAACAA CTGGCGCGC GAC GGGCGCCAG TTCGTAGCCTTTGTG rafA 2734352 - 2736436 + | alpha-galactosidase TERM 2273 2736798 - 2736788 - g 71 -8.2 -4.07568 | TGCCGCCGCCGAAAA GGCC CAT GGCC CCATTCACGCACTGG TERM 2274 2737205 - 2737227 + G 100 -9.8 -4.85599 | AACCCATCTGGAGCC GCGCGACATC GTC GATGCCGTGC TTTTTCTCGCCTCGA RD1_2866 2736537 - 2737307 + | oxidoreductase, putative dgoK 2737315 - 2738220 + | 2-dehydro-3-deoxygalactonokinase, putative dgoA 2738217 - 2738822 + | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase bgaT 2738962 - 2740872 + | beta-galactosidase pgm 2742508 - 2740877 - | phosphoglucomutase TERM 2275 2741071 - 2741020 - G 80 -15 -2.98942 | overlap 2741065 ATTGCTCCAGATAGA CGCGCAGTGTCGCACCTTCCGTGC CCGT GCCCGACAGGCGCAAAACGGCGCG CGCGCCGCCCTCAAA TERM 2276 2741078 - 2741065 - G 76 -9.5 -4.13014 | overlap 2741020 CCGACAGGCGCAAAA CGGCG CGCG CGCCG CCCTCAAAGCTGATC TERM 2277 2742285 - 2742262 - G 76 -12.5 -3.28924 | opp_overlap 2742269 2742269 CACCCTGCCCGACAA CCGCCAATG CCGCGC CATTGGCGG CGGCCATTTTCAGGA TERM 2278 2742469 - 2742484 + g 89 -4.6 -5.1861 | overlap 2742471 AGGTGCCGGGCTTCT GACCCT CAAA AGGGCC TTTTTTGATGGTCGA malQ 2744502 - 2742505 - | 4-alpha-glucanotransferase TERM 2279 2743698 - 2743681 - G 76 -6.9 -4.50976 | overlap 2743691 2743692 TTCGACATCACAAAA CGCATCG AAAG CGCTGCG CTCAGGGGCGGGCGA TERM 2280 2743966 - 2743933 - G 73 -8.7 -3.87815 | overlap 2743934 2743956 GTTGATCCCCAGAAA CGCCGCGCCTGCTTG ACCG CAAACCGCCGCGGCC TGCGCCAGATCATCA TERM 2281 2743965 - 2743934 - G 70 -12.2 -2.92475 | overlap 2743933 2743956 TTGATCCCCAGAAAC GCCGCGCCTGCTTG ACCG CAAACCGCCGCGGC CTGCGCCAGATCATC glgX 2746588 - 2744492 - | glycogen debranching enzyme RD1_2873 2748037 - 2746598 - | glycogen synthase TERM 2282 2747160 - 2747119 - G 76 -13.1 -3.30443 | opp_overlap 2747115 CCAGCAGCACATCAA CGCCTTTTTGCGTGGTCAA CCGG CTGATCACGCAAAACAGCG GCGCGTTATCCGGTG glgC 2749298 - 2748039 - | glucose-1-phosphate adenylyltransferase TERM 2283 2748712 - 2748737 + g 78 -6.9 -4.66609 | gap 1, overlap 2748722 2748733 GCCTGATCCGGATGT CCCGGC-ATC GCAGGCG GATCGCCGGG TTTTTCGATGAAATC glgB 2751539 - 2749344 - | glycogen branching enzyme TERM 2284 2749623 - 2749638 + g 71 -6.8 -4.28548 | opp_overlap 2749622 CAGCCAGGCAAGGAC CGACGC CTCG GCGTTG TTTTCGTCAATCCAT TERM 2285 2750489 - 2750462 - G 74 -11.9 -3.54424 | CGGCATGTTCGTAAA GGGCCGTGCCG TCAAAC CGGCCCAGCCC ATGCGCATCCTCCGG glgP 2753976 - 2751553 - | glycogen phosphorylase TERM 2286 2753784 - 2753772 - G 76 -6.2 -4.63048 | opp_overlap 2753772 TCGACAAATAATAAA CGCG CTTGC CGCG TGCTTCATAGGTCTT frk 2755000 - 2754068 - | fructokinase eda 2755673 - 2755032 - | KHG/KDPG aldolase edd 2757494 - 2755689 - | phosphogluconate dehydratase TERM 2287 2756362 - 2756377 + g 84 -6 -4.9725 | GTGTAAAGCTCCAGC CCGCCG CCCG CGACGG TTTTTGTATCGCCGT gap 2758547 - 2757540 - | glyceraldehyde-3-phosphate dehydrogenase RD1_2882 2759890 - 2758712 - | alcohol dehydrogenase, iron-containing TERM 2288 2759901 - 2759877 - G 71 -7.7 -4.07687 | ATGCCGTTCTCAAAA GCGCAGGGTGG CAT CCACCGCCCGC TTCCAGGCTGCGTAT glpK 2761358 - 2759871 - | glycerol kinase TERM 2289 2761150 - 2761166 + g 78 -6.5 -4.65895 | overlap 2761151 ATGGCGGCGATGTCC TCAGGCT TCA AGCCTGC TTTTTCGATGGCCGC glpD 2762973 - 2761375 - | glycerol-3-phosphate dehydrogenase TERM 2290 2761691 - 2761670 - G 78 -5.1 -4.81644 | overlap 2761673 GAAAGAAAAGGAAAA TCATCACGC AGCC GCGCGACAA GCGTGTCGAAATCCC TERM 2291 2763092 - 2763081 - H 74 -4.4 -4.80289 | ACAAAAGAGAGAAAA CGAA CAAT TTCG ATCCATCGTCCTTGG glpR 2763165 - 2763926 + | glycerol-3-phosphate regulon repressor, putative RD1_2887 2765077 - 2764163 - | hypothetical protein TERM 2292 2764520 - 2764495 - G 76 -6.1 -4.61231 | gap 1, opp_overlap 2764511 2764512 2764519 TGACATCCGCAAAAA CCGCAGCAG-CC TCA GATCTGATGCGG CGAAGAACCTTGGCC TERM 2293 2765030 - 2765009 - G 73 -10.1 -3.62275 | ACCCATCAGCGCAAA GCGCGGC AAGCGCGG GCCGCGC ATGGGCGGCCAGAAA RD1_2888 2767131 - 2765074 - | hypothetical protein TERM 2294 2765817 - 2765834 + g 75 -8.3 -4.20783 | overlap 2765819 ACTCGCTGCCTTGAA CCCGCGC GATG GCGCGTG TTTCTTCGGTGGCGT RD1_2889 2768626 - 2767649 - | ornithine cyclodeaminase/mu-crystallin family protein TERM 2295 2768624 - 2768614 - G 74 -6.8 -4.30576 | CGCCTACGATCAAAA GTCC TTT GGAC ATCGGGTATTCCTGT TERM 2296 2768653 - 2768688 + r 70 -9.7 -3.4072 | gap 1, overlap 2768652 2768656 GTCTTTGTCTTTTTT GT-AAGTCGCGCCCGG GCGTG CCGGGCGCGGTGTCAC TTCTGATGCCGGGTG RD1_2890 2769871 - 2768708 - | threonine aldolase srr 2770855 - 2769884 - | serine racemase TERM 2297 2770454 - 2770444 - G 79 -8.2 -4.57569 | GCACTTCGGCAAAAA CCGC TTC GCGG CTGGTGGTTGAGGGT sgaA 2772056 - 2770866 - | serine--glyoxylate aminotransferase TERM 2298 2771591 - 2771558 - G 100 -14.5 -4.30978 | CGCAATCCACGAAAA GCAGCGCCGGATGCG CGGA CGCATCCATCGCGGC GCGCACTCCGGCGAC iclR 2772262 - 2773119 + | acetate operon repressor, putative TERM 2299 2773452 - 2773476 + G 70 -10.1 -3.54424 | opp_overlap 2773455, overlap 2773455 CTTTGTGCGCCAACC CAATTCGATCA CGC TGATCGAAATG TTTGAAACCATGGCC RD1_2894 2773243 - 2773914 + | transcription regulator, putative fdhI 2775341 - 2774151 - | formate dehydrogenase, gamma subunit, putative TERM 2300 2774680 - 2774660 - G 88 -2.5 -5.58454 | CCCAGAGGAAAAAAA TCATGACGA TGG CCAGCATGA ACGCCCATGACACGT TERM 2301 2775241 - 2775259 + g 70 -10.2 -3.53224 | AGCGTTGTCGCCCCC CCGGTCGC GGA GCGGTCGG TTTCGCCAACAGGTG fdhB 2776017 - 2775421 - | formate dehydrogenase Fe-S subunit fdhA 2778915 - 2776033 - | formate dehydrogenase, alpha subunit TERM 2302 2778889 - 2778901 + g 84 -5.5 -4.87893 | TCCCGCCCGCTGTCC GACCG AAT TGGTC TTTTTCCTTAGCATT RD1_2898 2779201 - 2779010 - | twin-arginine translocation pathway signal sequence domain-containing protein TERM 2303 2779104 - 2779138 + g 72 -13.4 -2.62184 | GCCTCGGCGGATGTT GCGCCGACCGCAGCCG CAG CGACTGCTGCCGGTGC TGCTGTCCCAGCCAG torD 2779861 - 2779253 - | chaperone TorD RD1_2900 2780463 - 2779858 - | hypothetical protein RD1_2901 2781026 - 2780460 - | hypothetical protein TERM 2304 2780644 - 2780658 + g 72 -11.4 -3.30771 | CATGCATAGACCGCC GGTGGC ATC GCCACC TTCTCGACGATCTCC TERM 2305 2781416 - 2781451 + G 85 -6.2 -5.05782 | gap 1, overlap 2781418 CCATTGACGTCGACG CATTGGAGGCGGGCA CCGGCTT TGCCTG-CTCCAAGG TTTTTTCCGATGCAT RD1_2902 2781358 - 2783313 + | iron-sulfur cluster-binding protein, putative RD1_2903 2784110 - 2783307 - | hypothetical protein RD1_2904 2784346 - 2784110 - | hypothetical protein RD1_2905 2784137 - 2784334 + | hypothetical protein TERM 2306 2784449 - 2784459 + GH 74 -8.2 -3.96624 | opp_overlap 2784448 CCGTTGATGAAAAGG GCGC CGT GCGC TTTGTGATGGAGGTG RD1_2906 2784334 - 2785401 + | hypothetical protein RD1_2907 2785398 - 2786102 + | hypothetical protein RD1_2908 2786099 - 2786593 + | hypothetical protein RD1_2909 2787403 - 2786597 - | tungstate ABC transporter, tungstate-binding protein RD1_2910 2788110 - 2787400 - | tungstate ABC transporter, ATP-binding protein TERM 2307 2787475 - 2787464 - G 71 -5.8 -4.41348 | GGCGTCGCAAAGAAA GCCT GCGC AGGC CCGGATTCTCTCACA TERM 2308 2787524 - 2787510 - G 75 -2.1 -4.9218 | opp_overlap 2787516 CATCCAGCATAAAAA TCGCA TCGGT TGCAA GCCGCTTTGCCTGAC RD1_2911 2788832 - 2788110 - | tungstate ABC transporter, permease protein TERM 2309 2788894 - 2788904 + H 78 -2.4 -5.21709 | overlap 2788892 ATCATTCGCCCCCAC CCGC CGG GCAG TTTTTTCATATGCGC TERM 2310 2789101 - 2789125 + G 71 -8.6 -4.11394 | gap 1, opp_overlap 2789100 GGCGGCTTCATCAAC GGGCT-TGCCG CCTT TGGCACAGCCC TTTTCGCACTGGGGT RD1_2912 2789041 - 2789784 + | integral membrane protein, putative TERM 2311 2790060 - 2790104 + G 75 -2.8 -4.96848 | gap 2, overlap 2790062 2790064 CGTCCTATGCCGGAT CCTCCGCACTGGCGCGCCAGAT CGA ATTTGGTGCCCC-G-GCCGATG TTTTTCTCTCCGCCA modA 2789801 - 2790649 + | molybdate ABC transporter, periplasmic molybdate-binding protein modB 2790658 - 2791350 + | molybdate ABC transporter permease protein modC 2791347 - 2792444 + | molybdate ABC transporter, ATP-binding protein RD1_2916 2793120 - 2792452 - | hypothetical protein RD1_2917 2794658 - 2793198 - | hypothetical protein adhE 2796094 - 2794691 - | aldehyde-alcohol dehydrogenase, putative TERM 2312 2795532 - 2795547 + g 84 -3.2 -5.28481 | overlap 2795533 ATCATGTCGCTGATT TCCAGC AACC GTTGGG TTTTTTCCTTGGATC TERM 2313 2796119 - 2796148 + r 100 -15.7 -3.44146 | opp_overlap 2796113, overlap 2796120 CCTGCAAAAGTGGAG GGTCCGCGCCTCA GCCC TGGGGCGCGGACG TTGGTTATCAAAGCC TERM 2314 2796120 - 2796147 + r 100 -19.2 -2.66274 | opp_overlap 2796113, overlap 2796119 CTGCAAAAGTGGAGG GTCCGCGCCTCA GCCC TGGGGCGCGGAC GTTGGTTATCAAAGC RD1_2920 2797124 - 2796156 - | hypothetical protein RD1_2921 2797640 - 2797170 - | hypothetical protein RD1_2922 2799148 - 2797637 - | integral membrane protein, putative TERM 2315 2798422 - 2798446 + g 73 -4.8 -4.60041 | opp_overlap 2798420, overlap 2798430 GGTATTTCAGCAAGG CGCGCAGGGC CGCGA GCACGGCGTG TTTTTGCACCTGCAT TERM 2316 2799795 - 2799814 + G 81 -5.6 -4.8083 | overlap 2799796 2799810 TCTCATTGATCTGGG ACATCGCG AAAT CGCGGTGG TTTTTCCTCCTGTTG RD1_2923 2799241 - 2800278 + | LacI family transcription regulator fabD 2801329 - 2800286 - | malonyl CoA-acyl carrier protein transacylase, putative pdhB 2803515 - 2801326 - | pyruvate dehydrogenase E1 component, beta subunit, putative RD1_2927 2806986 - 2803633 - | hypothetical protein TERM 2317 2804255 - 2804228 - G 70 -9.9 -3.53091 | gap 1, overlap 2804249 AGGCTTTGTTCGAAA TCGGGCGTC-GC ATCAG ACAGACGCCCGA ACCACCCGTTGACAA TERM 2318 2805619 - 2805591 - G 72 -11 -3.3785 | overlap 2805584 2805597 GGAACGCAGGCACAA CGAGAATGCGCG ATGTG CGCACATGCTCG ACCAGAAGCCCCAGA TERM 2319 2805723 - 2805741 + g 85 -3.1 -5.36965 | overlap 2805721 CCTGAATGATCGACA CAAGCGC CTTGA GTGTTTG TTTTTTCTGATCTTC RD1_2928 2808340 - 2807072 - | hypothetical protein RD1_2929 2808678 - 2808517 - | hypothetical protein opuAC 2808659 - 2809627 + | glycine betaine transporter, substrate-binding protein TERM 2320 2809680 - 2809648 - fH 95 -14.2 -3.72324 | gap 1 CAGCGGTACGAACAA CCGTGCAGCGCCTCA CGAA CG-GGCGCTGCACAG GACATCAAAAGGGAT TERM 2321 2810478 - 2810462 - g 76 -6.5 -4.46212 | opp_overlap 2810473, overlap 2810464 TTTGGCATGACAAAA CGCCAGA AAC TCTGGGG GGTGCAGTTGCCACT opuAB 2809700 - 2810734 + | glycine betaine transporter, permease protein opuAA 2810745 - 2811773 + | glycine betaine transporter, ATP-binding protein uxuB 2813216 - 2811765 - | D-mannonate oxidoreductase, putative uxaC 2814619 - 2813213 - | glucuronate isomerase TERM 2322 2813479 - 2813468 - G 80 -3.6 -5.02476 | opp_overlap 2813471, overlap 2813469 2813471 ATAGCTGTCAAAAAA CCAC CAGG GCGG CCCTAGTTTCAGCGC RD1_2935 2815574 - 2814672 - | glycerol-3-phosphate ABC transporter, permease component ugpC 2816595 - 2815519 - | glycerol-3-phosphate transporter ATP-binding subunit TERM 2323 2815946 - 2815911 - GR 77 -3.4 -4.87273 | gap 3, overlap 2815900 2815932 AAGAGGCCACAAAAA GCGTCGCCGGATTGGAA TAAAG CTCCA-TC-GGCG-CGC CCATCTGTTCGATCT ugpE 2817440 - 2816595 - | glycerol-3-phosphate ABC transporter, permease protein ugpA 2818318 - 2817440 - | glycerol-3-phosphate ABC transporter, permease protein TERM 2324 2818349 - 2818376 + r 95 -18.4 -2.90075 | overlap 2818335 TGGTTTTTATGATTG GGCCAGCGGGCG ATCT CACCCGCTGGCC TGTCGTTACGAACGC upgB 2819687 - 2818392 - | glycerol-3-phosphate-binding periplasmic protein precursor, putative RD1_2940 2820400 - 2819870 - | cyclic phosphodiesterase, putative TERM 2325 2820180 - 2820156 - G 84 -4.1 -5.22312 | opp_overlap 2820174 AGCGACATGAAAAAA TCCGCCGTTTG CGA CACGCGGCTGA TGCACGCCGTTGTCT cysK 2820572 - 2821651 + | O-acetylserine sulfhydrylase RD1_2943 2822689 - 2821685 - | periplasmic iron-binding protein, putative RD1_2944 2824032 - 2822668 - | two-component sensor protein, putative TERM 2326 2823196 - 2823211 + g 77 -3.2 -4.89562 | overlap 2823197 CGCCCGCACCATGGC GCGCAA CGCC TTGCGG TTTTCTTCCTTTTCG TERM 2327 2823658 - 2823627 - G 79 -7.9 -4.56597 | TGTCGGTCGCAAAAA GCCTGCGCGCATC TGACGT GATCCGCACCGGC GCGCCGTTGAACTCA tctD 2824690 - 2824025 - | DNA-binding response regulator, putative RD1_2946 2824799 - 2825785 + | hypothetical protein TERM 2328 2825792 - 2825771 - f 100 -8.7 -5.15634 | overlap 2825773 2825787 2825788 GACCTGATGAAAAAA CTGGGCTTT TTGT AAAGCCCGG TTGACCGGGGCGCGC TERM 2329 2825794 - 2825827 + F 100 -18.9 -4.24404 | opp_overlap 2825788 2825787, overlap 2825795 TTTGTAAAGCCCGGT TGACCGGGGCGCG CAGCTGAT CGCGCCCCGGTCG TTTTACGCTTTGACT TERM 2330 2825795 - 2825826 + F 100 -20.2 -3.13919 | opp_overlap 2825788 2825787, overlap 2825794 TTGTAAAGCCCGGTT GACCGGGGCGCG CAGCTGAT CGCGCCCCGGTC GTTTTACGCTTTGAC RD1_2947 2825858 - 2826343 + | hypothetical protein RD1_2948 2826345 - 2827856 + | hypothetical protein RD1_2949 2828100 - 2827981 - | hypothetical protein TERM 2331 2828199 - 2828219 + r 88 -9.6 -4.43208 | opp_overlap 2828199 TTCGCGAAGAAAAAA GGCGCACC ATGAC GGCGCGCC TTTATTTACCGGTAT TERM 2332 2828219 - 2828199 - R 100 -12.5 -5.4505 | opp_overlap 2828199 TTCGCGAAGAAAAAA GGCGCACCA TGA CGGCGCGCC TTTATTTACCGGTAT lon 2830658 - 2828247 - | ATP-dependent protease La, putative TERM 2333 2828309 - 2828293 - G 77 -11.5 -3.57561 | opp_overlap 2828287 CTCGAACGCGCCAAA GCCGCCG CCG CAGCGGC ATCTTCGGCTTCCTG TERM 2334 2829107 - 2829126 + g 73 -9.2 -3.93148 | opp_overlap 2829106 2829105 CCTGCAACTCAAATT CCTTGGCC TTGA GGCCATGG TTCTTGATTTGCTTG TERM 2335 2830115 - 2830125 + g 74 -6.8 -4.40572 | opp_overlap 2830079 2830077 2830072, overlap 2830077 2830076 CGCTGAGCGTCTCGA GCAG ATC CTGC TTTTGTGCGACTTCT RD1_2951 2831540 - 2830857 - | chemoreceptor protein, putative TERM 2336 2831114 - 2831095 - G 76 -5.6 -4.68209 | opp_overlap 2831095 2831099 AGTTCAAGAAAGAAA CCGGCCAG TTCA CTGGTCAG TTTGTTGAGGCCCTT tgt 2832850 - 2831666 - | queuine tRNA-ribosyltransferase RD1_2953 2832887 - 2834395 + | hypothetical protein RD1_2954 2834486 - 2835382 + | SPFH domain-containing protein/band 7 family protein RD1_2955 2835397 - 2835654 + | hypothetical protein TERM 2337 2836212 - 2836193 - g 70 -3.4 -4.58395 | opp_overlap 2836208, overlap 2836194 2836195 2836206 2836207 CGCATCGCTGAAAAA GGGCGCAC CCAA ACGCGCGC TGCGCATCGCGGTTC rimK 2835732 - 2837111 + | ribosomal protein S6 modification protein RD1_2957 2837198 - 2837560 + | hypothetical protein maa 2837572 - 2838138 + | maltose O-acetyltransferase hesB 2838162 - 2838506 + | HesB-like iron-sulfur cluster assembly protein, putative tpiA 2838631 - 2839377 + | triosephosphate isomerase cyp 2839430 - 2840647 + | cytochrome P450, putative grp 2841293 - 2840823 - | glutamate uptake regulatory protein, putative TERM 2338 2841057 - 2841039 - G 70 -4.4 -4.57073 | overlap 2841040 CAGTGCCTTCAAAAA CGCCGCCT GCC AGTCGGCC TCATGCTCCGAGGTT TERM 2339 2841918 - 2841957 + G 76 -12.1 -3.2964 | opp_overlap 2841908, overlap 2841918 2841950 2841951 CAAAACCTTTCGCAA GGC-CGCCGATGCGCTGCC CTTT GGCCGCGCA-CGGCGCGAC TTCTGGCGCGCGTTT TERM 2340 2841950 - 2841969 + G 70 -4.8 -4.54727 | overlap 2841918 2841951 CCTTTGGCCGCGCAC GGCGCGAC TTCT GGCGCGCG TTTTACTTTGAAACC cysG 2841430 - 2842857 + | siroheme synthase RD1_2965 2842857 - 2843162 + | hypothetical protein TERM 2341 2844291 - 2844279 - g 74 -3.3 -4.72497 | CAGCCACGAACAAAA CGTCA TTC TGCCG CATGTGCATAAATCC cysI 2843155 - 2844819 + | sulfite reductase cysH 2844809 - 2845570 + | phosphoadenosine phosphosulfate reductase RD1_2968 2845567 - 2845980 + | hypothetical protein TERM 2342 2846280 - 2846269 - g 74 -7.2 -4.33258 | ACCGGCAAACAGAAA CCGC TGCT GCGG GCCTATTCGATCGCC fpr 2846062 - 2846910 + | ferredoxin--NADP reductase TERM 2343 2846922 - 2846944 + F 100 -16.2 -3.54543 | CTGAAGCTGCCATGT GGCCGGGCCG GTG CGGCGCGGCC TTTCAAAAAGTGGGT infC 2847148 - 2847642 + | translation initiation factor IF-3 TERM 2344 2847698 - 2847676 - f 73 -9.1 -3.82218 | opp_overlap 2847676 ACCGATACCATCAAA CGCGTTTGC CGGTT GCAAGCGCG TTTTTTCTTTGCGGA TERM 2345 2847676 - 2847698 + F 100 -11.3 -5.63517 | opp_overlap 2847676 ACCGATACCATCAAA CGCGTTTGC CGGTT GCAAGCGCG TTTTTTCTTTGCGGA TERM 2346 2848390 - 2848402 + G 87 -10.5 -4.3739 | overlap 2848371 CGCGCGATCCCAATC GCGCC GAT GGCGC TTTTCTGAACAACTC RD1_2971 2847756 - 2848778 + | hypothetical protein coxM 2849620 - 2848829 - | carbon monoxide dehydrogenase, medium subunit TERM 2347 2849719 - 2849672 - R 83 -9.6 -4.07568 | TTCCTCGGCCTAAAA CTCCCTGTTGGGGGCAAGAGGC AAAC GCCCCTCGCCCCGTTCAGCGGG ATCAGCCCTGCATGG coxL 2852093 - 2849721 - | carbon monoxide dehydrogenase, large subunit TERM 2348 2850494 - 2850513 + g 75 -7.8 -4.2828 | TATTGGCCGTATCAC CATGGACG ATCT CGACCATG TTTTCGTCAATGCCG coxS 2852683 - 2852198 - | carbon monoxide dehydrogenase, small subunit RD1_2975 2853804 - 2852791 - | molybdopterin biosynthesis protein, putative TERM 2349 2853035 - 2853012 - G 78 -4.5 -4.79174 | gap 1 ATCCAATGAACAAAA GGTTGCCCGG ATCCA CCGG-CATCC CGAACCGCGCAACCG TERM 2350 2853592 - 2853616 + g 71 -6.4 -4.26076 | gap 1, opp_overlap 2853590 2853591, overlap 2853566 GTCGGGCGCGAAAGC CTCGGCGAGCG CCTG TGCT-GCCGGG TTTTCATGCACGTCC RD1_2976 2854769 - 2853801 - | xanthine dehydrogenase accessory factor, putative TERM 2351 2855040 - 2855062 + G 86 -12.6 -3.86346 | opp_overlap 2855040 CTTTCGCGGCAAGAA CCGCGTGCAG CAG CAGCGCGCGG TTTATGCGGCCCTCA TERM 2352 2855062 - 2855040 - g 73 -10.4 -3.61398 | opp_overlap 2855040 CTTTCGCGGCAAGAA CCGCGTGCAG CAG CAGCGCGCGG TTTATGCGGCCCTCA RD1_2977 2854909 - 2855145 + | BolA family protein, putative RD1_2978 2855149 - 2855466 + | hypothetical protein RD1_2979 2855463 - 2855825 + | glutaredoxin-like protein, putative TERM 2353 2855850 - 2855871 + T 100 -13.7 -4.98531 | opp_overlap 2855850 CTCACTGCTGATCAA GCGCTGTCC GTTC GGGCAGCGC TTTTTCGTTTACCCC TERM 2354 2855871 - 2855850 - T 72 -11.5 -3.14931 | opp_overlap 2855850 CTCACTGCTGATCAA GCGCTGTCC GTTC GGGCAGCGC TTTTTCGTTTACCCC RD1_2980 2856272 - 2855880 - | hypothetical protein RD1_2981 2856802 - 2856272 - | hypothetical protein TERM 2355 2856599 - 2856631 + g 70 -4 -4.72272 | gap 1, overlap 2856611 ACGCTCTGCCAGCAC CCGGACG-CGCTCGG TCAG CTGAGCGTTGACCTG TTTTTCCTCCGCCAG TERM 2356 2858249 - 2858213 - g 72 -11 -3.29958 | opp_overlap 2858245, overlap 2858205 2858211 2858216 CCAACAACACCAAGA CCAGCGATC-TCGGCGTC TTT GACACCGATAATCGC-GG CGGGCGCTACGTTTA tktA 2857039 - 2859084 + | transketolase TERM 2357 2859232 - 2859210 - T 100 -15.6 -4.32034 | opp_overlap 2859210 GGACCATGATCAAAA CGCCGCGATA TCC CATCGCGGCG TTTTTCGTCTGCGCA TERM 2358 2859210 - 2859232 + T 100 -14.9 -4.8048 | opp_overlap 2859210 GGACCATGATCAAAA CGCCGCGAT ATCCC ATCGCGGCG TTTTTCGTCTGCGCA RD1_2983 2860356 - 2859331 - | hypothetical protein gap 2860544 - 2861542 + | glyceraldehyde-3-phosphate dehydrogenase TERM 2359 2861580 - 2861605 + T 100 -16.9 -4.88407 | CACAGTTTCGGCGGA CTGCCGTGCCT CCTC AGGCGCGGCAG TTTTTCGTTGAATGA coaD 2862218 - 2861718 - | pantetheine-phosphate adenylyltransferase RD1_2986 2862739 - 2862305 - | CBS domain-containing protein RD1_2988 2863696 - 2862800 - | LysR family transcriptional regulator TERM 2360 2862972 - 2862946 - GR 70 -6.5 -4.09685 | CTTCATCTGTCAAAA TGCGCGCAACC TCGGG GGCTGCGGACA GGGCGAAATCATGCA RD1_2989 2863814 - 2863641 - | hypothetical protein mmsA 2863828 - 2865327 + | methylmalonate-semialdehyde dehydrogenase TERM 2361 2865330 - 2865366 + F 91 -12.2 -4.07885 | opp_overlap 2865328 2865331, overlap 2865331 2865334 CGTAATGGAATAACT ATTAGGCTGCGCCGGG GTTTG CCCGGCGCAGCATGGG TTTTGCGGGCAGATA TERM 2362 2865331 - 2865365 + F 93 -15.7 -3.04517 | opp_overlap 2865328 2865331, overlap 2865330 2865334 GTAATGGAATAACTA TTAGGCTGCGCCGGG GTTTG CCCGGCGCAGCATGG GTTTTGCGGGCAGAT TERM 2363 2865365 - 2865331 - f 71 -11.3 -2.96329 | opp_overlap 2865331 2865330 2865334, overlap 2865328 GTAATGGAATAACTA TTAGGCTGCGCCGGG GTTTG CCCGGCGCAGCATGG GTTTTGCGGGCAGAT TERM 2364 2865334 - 2865362 + F 91 -17.4 -2.74605 | opp_overlap 2865328 2865331, overlap 2865331 2865330 ATGGAATAACTATTA GGCTGCGCCGGG GTTTG CCCGGCGCAGCA TGGGTTTTGCGGGCA mmsB 2865473 - 2867398 + | 3-hydroxyisobutyrate dehydrogenase RD1_2992 2867570 - 2867713 + | hypothetical protein TERM 2365 2867908 - 2867871 - T 75 -11.9 -2.93585 | gap 1, opp_overlap 2867876, overlap 2867868 GTACATTTGAAACCA GCGCAGGGCTGTGAGCGC GCA GCGC-CACCGCCCTGTTC AAACACTTATTCGGC TERM 2366 2867876 - 2867903 + T 84 -13.4 -3.03338 | gap 1, opp_overlap 2867871 2867868 TTTGAAACCAGCGCA GGGCTGTGAGCGC GCA GCGC-CACCGCCC TGTTCAAACACTTAT uvrA 2870773 - 2867915 - | excinuclease ABC subunit A TERM 2367 2868575 - 2868594 + g 73 -4.2 -4.65895 | overlap 2868576 GTTGAAACTGAACCG TCCGGG TTTGTAGC CCCGGG TTTTTGCCTCGGGCA RD1_2994 2871135 - 2871797 + | hypothetical protein TERM 2368 2871870 - 2871814 - T 89 -9 -4.62069 | gap 2, opp_overlap 2871817 2871820 2871865, overlap 2871816 2871823 GCGTCATGCGAAAAA CCTGAATCACGTAACGCTACTTGAAATC AGA GATTTCAA-C-GCGTTACGTGATACTTG GTGTCTCAGGTATTT TERM 2369 2871817 - 2871867 + T 75 -11.5 -3.32498 | gap 2, opp_overlap 2871816 2871814 2871823, overlap 2871820 2871865 TCATGCGAAAAACCT GAATCACGTAACGCTACTTGAAATC AGA GATTTCAAC--GCGTTACGTGATAC TTGGTGTCTCAGGTA TERM 2370 2871820 - 2871864 + T 72 -11.8 -2.83345 | gap 2, opp_overlap 2871816 2871814 2871823, overlap 2871817 TGCGAAAAACCTGAA TCACGTAACGCTACTTGAAATC AGA GATTTCAAC--GCGTTACGTGA TACTTGGTGTCTCAG TERM 2371 2871969 - 2871933 - T 80 -10.3 -3.89501 | gap 1, opp_overlap 2871943, overlap 2871943 CAACAGCGTCATAAA CACGACAAAAGCGGGG TTTGAT CCCCGCTTTTTT-GTG TCGATGCGATCCTAC TERM 2372 2871960 - 2871943 - T 91 -9.8 -4.59207 | opp_overlap 2871943, overlap 2871933 ATAAACACGACAAAA GCGGGG TTTGAT CCCCGC TTTTTTGTGTCGATG TERM 2373 2871943 - 2871960 + T 100 -9.8 -5.38047 | opp_overlap 2871933 2871943 ATAAACACGACAAAA GCGGGG TTTGAT CCCCGC TTTTTTGTGTCGATG lpdA 2873375 - 2871981 - | dihydrolipoamide dehydrogenase RD1_2996 2874079 - 2873495 - | hypothetical protein RD1_2997 2875437 - 2874172 - | major facilitator superfamily protein, putative TERM 2374 2874727 - 2874715 - G 74 -3.3 -4.7373 | GGAGCCGACGAAAAA CATCG CCA CGAAG GTAGATATCTGGGCG TERM 2375 2875418 - 2875407 - G 78 -7.2 -4.65078 | opp_overlap 2875407 ACATGCCCAACAAAA GCGC CCAA GCGC TGGTTAATACCTGAA queA 2876596 - 2875541 - | S-adenosylmethionine TERM 2376 2876065 - 2876028 - G 80 -10.5 -4.07687 | gap 1, opp_overlap 2876030, overlap 2876029 2876032 AGCGCTTTGTCAAAA TGCAGCGAGGCCGTCGGC GCA GCC-ACGGCCCCACTGTT TTGGGCGAATACGGT TERM 2377 2876064 - 2876029 - G 76 -14 -3.04398 | gap 1, opp_overlap 2876030, overlap 2876028 2876032 GCGCTTTGTCAAAAT GCAGCGAGGCCGTCGGC GCA GCC-ACGGCCCCACTGT TTTGGGCGAATACGG TERM 2378 2876030 - 2876063 + g 89 -13.1 -4.08767 | gap 1, opp_overlap 2876029 2876028 2876032 CGCTTTGTCAAAATG CAGCGAGGCCGTCGGC GCA GCC-ACGGCCCCACTG TTTTGGGCGAATACG TERM 2379 2876061 - 2876032 - G 77 -14.3 -2.74605 | gap 1, opp_overlap 2876030, overlap 2876029 2876028 CTTTGTCAAAATGCA GCGAGGCCGTCGGC GCA GCC-ACGGCCCCAC TGTTTTGGGCGAATA RD1_2999 2879966 - 2876607 - | hypothetical protein TERM 2380 2880143 - 2880191 + G 100 -13 -4.82901 | gap 1, opp_overlap 2880141 2880136 CCTACCAAGCACAGG CGGCACCGACGTCACGCTGAGCG CCCT CGC-CGGCGCGCCGGTGGTGCTG TTTTTCTACCCGCGC TERM 2381 2880344 - 2880327 - g 72 -2.7 -4.7497 | GCCAGCCATGAAAAA TTCGC CAAGAAAC GCGAA TTGGACATCCCGCTG bcp 2880093 - 2880554 + | bacterioferritin comigratory protein TERM 2382 2881123 - 2881147 + G 79 -12.8 -3.51232 | TCGCCGTGCCAAGGC CACCAGCGCC GTCGA GGCGCTGGAG TTGATTTACAGCGAG RD1_3001 2880551 - 2881360 + | hypothetical protein TERM 2383 2881370 - 2881386 + F 100 -9.3 -5.07107 | opp_overlap 2881370 GCCTAGAGCGCGAAA CCGCCGG AAA CAGGCGG TTTTTTGCCCATTTA RD1_3002 2881528 - 2882862 + | M24/M37 family peptidase putative RD1_3004 2883423 - 2883280 - | hypothetical protein RD1_3003 2882852 - 2883346 + | hypothetical protein TERM 2384 2883378 - 2883366 - GT 76 -5.5 -4.66318 | opp_overlap 2883373, overlap 2883368 2883373 AGGATTTCAACAAAA GACAC AAG GTGCC GCAGAAAACTGTGGC TERM 2385 2883373 - 2883396 + gT 100 -12.4 -4.99035 | opp_overlap 2883366 2883373 2883368 CAACAAAAGACACAA GGTGCCGCAG AAAA CTGTGGCGCC TTTTTCTATGCGTGC TERM 2386 2883396 - 2883373 - GT 71 -8 -3.89068 | opp_overlap 2883373, overlap 2883366 2883368 CAACAAAAGACACAA GGTGCCGCAG AAAA CTGTGGCGCC TTTTTCTATGCGTGC TERM 2387 2883702 - 2883746 + Tr 100 -20.9 -3.17723 | CAGCTGCGGCAGGTT ATTGAGGGTCTCAACCGAGCA AAC TGCTCAGTTGAGACCCTCGAA TTGCGTTCCAGATCG ppiB 2884326 - 2883787 - | peptidyl-prolyl cis-trans isomerase, cyclophilin-type, putative RD1_3007 2884846 - 2884340 - | peptidyl-prolyl cis-trans isomerase, cyclophilin-type, putative pgk 2884976 - 2886163 + | phosphoglycerate kinase TERM 2388 2886272 - 2886259 - f 71 -5.9 -4.37658 | AAGTCGCTCACAAAA CGCCA AAAC CGGCG TTAACAGGCAAAAAA RD1_3010 2886391 - 2886690 + | hypothetical protein TERM 2389 2886791 - 2886766 - f 73 -10.7 -3.36968 | opp_overlap 2886772 CACCGAATCCGATAA TAGATAGTTTA ATGC TAAACTATCTA CCCCACGGCGGGTTG pdhA 2886826 - 2887836 + | pyruvate dehydrogenase complex, E1 component, alpha subunit pdhB 2887840 - 2889219 + | pyruvate dehydrogenase subunit beta pdhC 2889231 - 2890526 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 2390 2890574 - 2890612 + T 100 -24.1 -2.50443 | opp_overlap 2890574 2890577, overlap 2890577 CCATATCGCCAGACA CGACATGGCCCGCGATT CTCAA AATCGCGGGCCATGTTG GTTAATACAGTATCA TERM 2391 2890612 - 2890574 - T 100 -22.6 -2.89191 | opp_overlap 2890574 2890577, overlap 2890577 CCATATCGCCAGACA CGACATGGCCCGCGATTC TCA AAATCGCGGGCCATGTTG GTTAATACAGTATCA TERM 2392 2890609 - 2890577 - T 100 -22.9 -2.69468 | opp_overlap 2890574 2890577, overlap 2890574 TATCGCCAGACACGA CATGGCCCGCGATTC TCA AAATCGCGGGCCATG TTGGTTAATACAGTA TERM 2393 2890577 - 2890609 + T 100 -22.2 -3.40371 | opp_overlap 2890577 2890574, overlap 2890574 TATCGCCAGACACGA CATGGCCCGCGATT CTCAA AATCGCGGGCCATG TTGGTTAATACAGTA cysE 2891482 - 2890661 - | serine acetyltransferase TERM 2394 2891574 - 2891531 - R 100 -14.8 -3.85567 | gap 1, opp_overlap 2891525, overlap 2891532 AAGGCCAAACGCAAA GCTGTGATGGGGTCAATTCCA TCT TGGAAT-GACCCTATCACAGG TTGAACATGTTCAGG TERM 2395 2891573 - 2891532 - R 95 -18.3 -2.90617 | gap 1, opp_overlap 2891525, overlap 2891531 AGGCCAAACGCAAAG CTGTGATGGGGTCAATTCCA TCT TGGAAT-GACCCTATCACAG GTTGAACATGTTCAG RD1_3016 2895529 - 2891585 - | hypothetical protein TERM 2396 2893623 - 2893637 + g 71 -7.8 -4.08692 | opp_overlap 2893632 CGCACCCCGCCGATC CGCTCA AAA TGGGCG TTTTCCCACCAGTTA TERM 2397 2894933 - 2894921 - G 81 -4.7 -4.88405 | AATCTCGAAAGAAAA CTGCG GAA CGCGG TTACCAAACCGTTCC TERM 2398 2894994 - 2894968 - G 76 -5.8 -4.58283 | CAAGGTTTTCAAAAA CGACATATGCCG TGC CGCGATATGCCG GAACATTACCTGCAC RD1_3017 2895975 - 2895529 - | hypothetical protein RD1_3018 2896859 - 2895972 - | hypothetical protein RD1_3019 2897491 - 2896859 - | hypothetical protein RD1_3020 2898171 - 2897509 - | hypothetical protein RD1_3022 2898369 - 2898184 - | hypothetical protein RD1_3023 2898626 - 2898366 - | hypothetical protein RD1_3024 2899098 - 2898685 - | hypothetical protein TERM 2399 2898878 - 2898853 - G 77 -3.1 -5.00616 | opp_overlap 2898856, overlap 2898856 CTCTCCGTCAAAAAA CAGCTGACGCG CGCG CTCGTCCGTTG CTGAATCGCGAAATA RD1_3025 2899537 - 2899127 - | hypothetical protein RD1_3026 2899872 - 2899534 - | phage head-tail adaptor, putative RD1_3027 2900462 - 2899869 - | hypothetical protein RD1_3028 2901799 - 2900621 - | phage major capsid protein, putative TERM 2400 2901249 - 2901228 - G 71 -8.7 -3.72576 | CTGTCGTCCAGCAAA CGCTGCGAA GCCT TTGGCAGCG CGCTCAGCTCATGCA RD1_3030 2902424 - 2901867 - | phage prohead protease, putative TERM 2401 2902343 - 2902331 - G 70 -4.8 -4.57569 | overlap 2902332 CCACCGCCCCAAAAA GGCT TGCGT AGCC AGCAATGACACTGCC RD1_3031 2902703 - 2902458 - | hypothetical protein RD1_3033 2903850 - 2902672 - | phage portal protein, putative TERM 2402 2903969 - 2903957 - R 71 -4.8 -4.58685 | opp_overlap 2903968, overlap 2903946 AAATGCTGTCAAAAA CGTC AGCTA GACG CCCGCGGCATTAACT RD1_3034 2905369 - 2903999 - | hypothetical protein TERM 2403 2904901 - 2904887 - G 76 -10 -3.73224 | opp_overlap 2904887 CCAGGCCGCATCAAA TTGCGG CCC CCGCAA TCCTTCCGGATCAAA TERM 2404 2904938 - 2904988 + g 75 -13.3 -2.89564 | gap 1, opp_overlap 2904958, overlap 2904919 GTGAATGGTGGCAAT CGCCCCGTTTGGCCAGACAAGACG CTTG CGTCCTG-CTTCCCAAACCGGGCG TCTGTCGGGTGGCGA TERM 2405 2905274 - 2905241 - G 91 -13.3 -3.92659 | gap 1, opp_overlap 2905240 2905239 2905244, overlap 2905245 2905248 GGCCCAAAACTCAAA GAGATAAGGGAGAGCC AGA AGCTCTCCCTCA-CTC AGTTCATTCAGAAAT TERM 2406 2905271 - 2905245 - G 81 -13.8 -3.33899 | opp_overlap 2905244 2905240 2905239, overlap 2905241 2905248 CAAAACTCAAAGAGA TAAGGGAGAGCC AGA AGCTCTCCCTCA CTCAGTTCATTCAGA TERM 2407 2905268 - 2905248 - G 91 -13.3 -3.77906 | opp_overlap 2905244 2905240 2905239, overlap 2905245 2905241 AACTCAAAGAGATAA GGGAGAGCC AGA AGCTCTCCC TCACTCAGTTCATTC TERM 2408 2905443 - 2905476 + r 75 -5.9 -4.5366 | gap 1 TTCTTGACAGGTTTT CAGCAGCGTCGTTGCC GAA GCCACCGTC-CTGCTG TTTTGCGTTTTTTCC TERM 2409 2905701 - 2905672 - R 79 -7.9 -4.43283 | gap 2, opp_overlap 2905687 CGAGAGAAACAGAAA GGCGACCCACCGG ACTGCG CCGG-G-GTCGCC TGCCCACTTCTTCTA RD1_3035 2907056 - 2905890 - | hypothetical protein TERM 2410 2906267 - 2906278 + g 71 -7.2 -4.21922 | overlap 2906268 CCTGCCGACGCTCTT CGGC AACG GCCG TTTCCTTTTCAATAA TERM 2411 2906339 - 2906349 + g 71 -8.2 -4.07568 | opp_overlap 2906339 2906338, overlap 2906331 TCTCGATCGGCAAAC CCGG CTG CCGG TTTTCCCAGACGCGC fabF 2908315 - 2907056 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2412 2907254 - 2907242 - G 75 -7.7 -4.23892 | GGCAAGGATCGAAAA GATCG CCT CGATC GCGCCGGCCGCGCCC RD1_3037 2908939 - 2908406 - | acetyltransferase, putative TERM 2413 2908714 - 2908691 - G 75 -3 -4.96848 | overlap 2908659 TTTGCCATAGAAAAA CCCGACCTGC CCGG ACATGTCCGG CGCACGATGCCGCAG TERM 2414 2909070 - 2909046 - R 100 -7.8 -5.1861 | opp_overlap 2909046 CCGACCATGAAAAAA GCGCCTCCCC GCGAA AGAGAGACGC TTTTTAATGCTGCGA TERM 2415 2909046 - 2909070 + r 70 -2.7 -4.77036 | opp_overlap 2909046 CCGACCATGAAAAAA GCGCCTCCC CGCGAAA GAGAGACGC TTTTTAATGCTGCGA acpP 2909345 - 2909112 - | acyl carrier protein RD1_3039 2910332 - 2909595 - | short chain dehydrogenase/reductase family oxidoreductase fabD 2911279 - 2910347 - | malonyl CoA-acyl carrier protein transacylase RD1_3041 2911470 - 2912669 + | cytochrome b561, putative TERM 2416 2912678 - 2912700 + T 91 -14.8 -3.1085 | opp_overlap 2912678 CGGCTGAATGAAAAA GGCCGCGCTG TCA TGGCGCGGCC TCTTGGATCGATTGG TERM 2417 2912700 - 2912678 - T 100 -13.4 -4.8622 | opp_overlap 2912678 CGGCTGAATGAAAAA GGCCGCGC TGTCATG GCGCGGCC TCTTGGATCGATTGG RD1_3042 2913307 - 2912729 - | hypothetical protein TERM 2418 2913763 - 2913749 - g 70 -10 -3.56099 | GACAACGGCGGCAAA CTCGTG GAT CACGAG TACTGGGGCGTCAAA rpsF 2913641 - 2913994 + | 30S ribosomal protein S6 rpsR 2914021 - 2914248 + | 30S ribosomal protein S18 TERM 2419 2914859 - 2914839 - g 82 -11.1 -3.90729 | AAGAACTCGCAGAAA CTGCCGGTG TGG CACCTGCAG AGCCAAGCGAGGAAG rplI 2914259 - 2914894 + | 50S ribosomal protein L9 TERM 2420 2914939 - 2914919 - Tf 95 -14.7 -3.71873 | opp_overlap 2914919 CTATCGACATTGAAA GGCCGGGAA CCG CTCCCGGCC TTTTTTCTTGGGGCA TERM 2421 2914919 - 2914939 + TF 100 -14 -5.4505 | opp_overlap 2914919 CTATCGACATTGAAA GGCCGGGA ACCGC TCCCGGCC TTTTTTCTTGGGGCA TERM 2422 2915080 - 2915092 + TF 86 -6.9 -5.00616 | overlap 2915067 2915081 CCTTCCATGCGGCCT TGCGC ATG GCGCG TTTTTTGCGCCCAAG RD1_3046 2915233 - 2915060 - | hypothetical protein aox 2915228 - 2915869 + | alternative oxidase TERM 2423 2915875 - 2915908 + Tr 81 -14.5 -2.62396 | ATCCGCCTGACTGTT GCACGGCCTCCCCTG CGAT CGGCGGAGGCCGTGA TCCTCTGCGCGGGTG apqZ 2916613 - 2915924 - | aquaporin Z TERM 2424 2916347 - 2916320 - G 71 -9 -3.75738 | TACGATCATGAACAA GACCGCGGCTGC GAGG GCAGCACCGGCC ACCTGGGCTGCCCAA TERM 2425 2916729 - 2916690 - R 95 -13 -4.15833 | opp_overlap 2916699, overlap 2916699 ATCACGACGGTAAAA TTGAAAAAACCGGCGTCA TTTC TGACACCGGTCTCATCAA TCAACGCAAATCGCG TERM 2426 2916720 - 2916699 - R 100 -12.3 -5.2696 | opp_overlap 2916699, overlap 2916690 GTAAAATTGAAAAAA CCGGCGTCA TTTC TGACACCGG TCTCATCAATCAACG tig 2918080 - 2916749 - | trigger factor TERM 2427 2917030 - 2917049 + g 70 -10.6 -3.42378 | opp_overlap 2917030 2917029 2917027 2917022, overlap 2917031 GCAACAACCCAAGAC GCACGCGG CGCT CCGCGAGC TTGGTGTGTTCTTCG RD1_3050 2921336 - 2918316 - | ABC transporter, permease protein, putative TERM 2428 2921949 - 2921990 + r 76 -2.9 -5.00616 | gap 1, overlap 2921941 2921950 GCGCGTTCGCAGCGA TTGTGTTGCAGACCCGCCGC GTT GTGG-GAGCCTGCAACGAAG TTTTTTAGAAAAAGG RD1_3051 2922567 - 2921995 - | hypothetical protein rrmJ 2923383 - 2922661 - | ribosomal RNA large subunit methyltransferase, putative RD1_3053 2924498 - 2923383 - | Ppx/GppA family phosphatase TERM 2429 2923941 - 2923956 + g 73 -10.4 -3.62046 | overlap 2923945 ATTGAGATGCATGAT CGAGCG CGCC CGCTCG TTCTTGGGCACGTCC TERM 2430 2924135 - 2924154 + g 71 -7.8 -4.07568 | opp_overlap 2924149, overlap 2924122 2924136 TTTCGCGCTGCACAC GGCGGATG AATT CATCCGCG TTTTGCGCGCGGCGA TERM 2431 2924266 - 2924284 + g 74 -7.3 -4.36914 | opp_overlap 2924278 GTGCGCGTCATGGAT CCGCGCG ACAAC CGCCCGG TTTTCTCCAGACCGG RD1_3054 2924772 - 2925068 + | hypothetical protein TERM 2432 2925151 - 2925184 + G 81 -8 -4.59853 | overlap 2925152 GCGCAAAGTTGCGCC AGCCTCGCCTTCCG TCAATC CGGATGTCGAGGCG TTTTTGCAGGATTAC TERM 2433 2925152 - 2925183 + G 72 -11.5 -3.3543 | overlap 2925151 CGCAAAGTTGCGCCA GCCTCGCCTTCCG TCAATC CGGATGTCGAGGC GTTTTTGCAGGATTA metF 2925059 - 2926042 + | 5,10-methylenetetrahydrofolate reductase, putative TERM 2434 2927099 - 2927140 + G 70 -13 -2.86773 | opp_overlap 2927096, overlap 2927098 CCGGGCCAGGAAGGT CGCG-GACGTGCGGCGCGCA CGGG TGGGCGGCGC-CGTCGCGCG TGATTGGCTTTTTGA metH 2926061 - 2927143 + | methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase TERM 2435 2927172 - 2927196 + F 100 -15.7 -5.95539 | CAGACAATTCTGGAA CCCCCGTCGAT GAC ATCGCCGGGGG TTTTTTTGTTTAAAA cheY 2927654 - 2928019 + | chemotaxis protein CheY, putative cheA 2928050 - 2930272 + | chemotaxis protein CheA cheW 2930269 - 2930727 + | chemotaxis protein CheW cheR 2930727 - 2931611 + | chemotaxis protein methyltransferase cheY 2931602 - 2931988 + | chemotaxis response regulator CheY TERM 2436 2932056 - 2932070 + F 71 -4.2 -4.62069 | overlap 2932057 GCAATCATCTGGATT TCTTGG CAG CCAGGG TTTTTGAAGTAGAAG RD1_3063 2932629 - 2933438 + | integrase catalytic subunit RD1_3064 2933622 - 2933452 - | integrase catalytic subunit TERM 2437 2934026 - 2934040 + r 71 -4.2 -4.59773 | overlap 2934028 2934029 GGCGGGCGTCACCAC TTTCGC GAG GCGACA TTTTTCAGCATCGCG RD1_3065 2934192 - 2934019 - | hypothetical protein frpC 2942307 - 2934307 - | iron-regulated protein frpC, putative TERM 2438 2936091 - 2936081 - G 73 -4.6 -4.65916 | CCGAGGGCAAGAAAA CCCG GAT CAGG CCGCATGACAAACAA TERM 2439 2941976 - 2942028 + g 74 -5.4 -4.57569 | gap 2, overlap 2941978 TCATAGGGCAGAACC GCCGCGATCTGGCCCGGTGTGATCAG GTC CGGATC-CTCCGGGTCATC-CGCGCC TTTTTCAAGCCCTGC TERM 2440 2942321 - 2942368 + r 71 -4.9 -4.57837 | overlap 2942322 ATTAATCTGTCTCCA TCCGGG-TGTTCCAGTCCGAGAA CGGT TTCTCGGAAAG-ACCAGCCCGGG TTTTTAAAAGGCTAT RD1_3067 2942756 - 2942628 - | hypothetical protein RD1_3069 2943198 - 2944772 + | phage integrase family site specific recombinase RD1_3070 2945035 - 2944769 - | DNA-binding protein, putative TERM 2441 2945108 - 2945127 + H 74 -2.7 -4.97824 | overlap 2945109 ATTTCAGGATAATCG TGGCGTC ACTCAG GTCGCCG TTTTGTTTGGATTTT RD1_3071 2945130 - 2945597 + | hypothetical protein RD1_3072 2945607 - 2945969 + | hypothetical protein RD1_3073 2946956 - 2946828 - | hypothetical protein TERM 2442 2946870 - 2946894 + g 76 -7.1 -4.44797 | CAAAACTTGTGTGGG GCGGGAGCG TGTGGGT TGTTCCCGC TTTTCGTATTCCTCC RD1_3074 2947032 - 2946937 - | hypothetical protein RD1_3075 2948381 - 2947011 - | carbohydrate kinases, putative TERM 2443 2947322 - 2947354 + g 71 -7.6 -4.08767 | gap 1, opp_overlap 2947302, overlap 2947321 CTGAACGCGGCCCGG TGC-CGGGTGCGGGT TCAG GCCCGCTCCAGCGCA TTTTGCGCCCCTGAA TERM 2444 2947849 - 2947821 - G 73 -4.5 -4.69053 | opp_overlap 2947823, overlap 2947823 GACCAGCGAAGAAAA CCGACCCGTGA CTGGTTC CCACAGGTCTG TATGGCACCCGATCG RD1_3076 2948695 - 2948378 - | hypothetical protein RD1_3077 2949693 - 2948692 - | sugar ABC transporter permease protein TERM 2445 2949599 - 2949588 - G 71 -5.8 -4.30576 | TGTTCACGATGAAAA TCGC GATG GCGA CGGCGAGCAAAAGGG rbsC 2950652 - 2949690 - | ribose ABC transporter, permease protein rbsA 2952202 - 2950667 - | ribose transport ATP-binding protein TERM 2446 2951148 - 2951137 - G 74 -5.8 -4.57569 | TGATGTTCTGAAAAA TCGG CAAC CCGA TCACCACACCCTGCT RD1_3080 2953244 - 2952252 - | sugar ABC transporter, ATP binding protein, putative TERM 2447 2952285 - 2952317 + g 73 -9.8 -3.70405 | overlap 2952281 CTGCTCGATGTTGCT GGCGTCATAGACGA AGGGA TCGGCCATGGCGCC TTCGTTGTTTTCATC TERM 2448 2952730 - 2952758 + g 72 -11.7 -3.27475 | overlap 2952729 ATCACCTTGTTCATC TCCTCCATCCAGA TGT TCTGGTTGGTGGA TGTTGTGGTCGCAGA RD1_3082 2954081 - 2953269 - | DeoR family transcription regulator TERM 2449 2954178 - 2954150 - H 75 -11.1 -3.31248 | opp_overlap 2954150 2954147, overlap 2954154 CAATATTTGTCATAA TCAATCACTCTGC ACC GCAGCATGATTGA TTGTGATTGAAACTG TERM 2450 2954967 - 2954980 + G 76 -9.5 -4.07687 | opp_overlap 2954967 2954965 TTTGCAGAGCAAACA GCGGG CAAG CCCGC TTTTGGCGGCGCACT TERM 2451 2955578 - 2955556 - g 78 -15.6 -2.53911 | opp_overlap 2955544 2955543 CCAAGCTGCAACGCA TGCCAGCGCC CAA GGCACTGGCA GGACGTGTGGCACTT RD1_3083 2954268 - 2956370 + | short chain dehydrogenase RD1_3084 2956384 - 2957658 + | hypothetical protein TERM 2452 2957846 - 2957858 + G 77 -7.7 -4.36411 | overlap 2957845 GCAATTTGTTGCCGT CACCA TTG TGGTG TTTTCATCCTTCCTG TERM 2453 2959320 - 2959292 - g 100 -16.9 -4.18018 | opp_overlap 2959286 2959310, overlap 2959316 2959317 TTGGGTCAGCGAAAA CGTCATTGTCATC CGC GACGACAATGACG TGCCCGTCTATGCCG fixL 2957784 - 2960129 + | sensor protein FixL fixJ 2960113 - 2960754 + | transcriptional regulatory protein FixJ, putative TERM 2454 2961111 - 2961075 - T 76 -12.3 -3.08015 | CGAATGACTGGAATA GCGCTGCGATCTGTC TTGCACC GATGGATCGCAGCGC ACCACTTCCCACGGC aroB 2962264 - 2961152 - | 3-dehydroquinate synthase TERM 2455 2961530 - 2961553 + g 70 -12.4 -2.94218 | overlap 2961532 GGTATGACCCAGATT GAGCAGCGCG CGAT CGCCCTGCTC TGTCTCATCGCGGAT aroK 2962850 - 2962257 - | shikimate kinase, putative TERM 2456 2962960 - 2962971 + G 71 -7.2 -4.1822 | TTCCTGATCTATCTG GCCG TGAT CGGC TTTATTGCACTGGCG RD1_3089 2962927 - 2963076 + | hypothetical protein TERM 2457 2963671 - 2963683 + G 70 -4.7 -4.46212 | CCTTGCGCCCTCCCT GTCGC ACC GCGTC TTTTGTGCTGCCCGG TERM 2458 2964245 - 2964260 + G 71 -5.4 -4.37658 | gap 1 CGGGCGCAGGAAATC GCGACCA CCA TGG-CGC TTTTGTCACCGGATT RD1_3090 2963066 - 2964604 + | hypothetical protein TERM 2459 2965250 - 2965224 - g 78 -5.1 -4.84761 | gap 1, opp_overlap 2965226 2965226, overlap 2965226 AGAGGCCCAGAAAAA GACC-GAAGGGC ATCC GCCCTCCCGGTT TCTGTTCGCATCACG TERM 2460 2965247 - 2965226 - g 71 -7.9 -4.04397 | opp_overlap 2965226 2965226, overlap 2965224 AGGCCCAGAAAAAGA CCGAAGGGC ATCC GCCCTCCCG GTTTCTGTTCGCATC xerD 2964604 - 2965575 + | tyrosine recombinase XerD RD1_3092 2965734 - 2967041 + | CBS domain-containing protein TERM 2461 2967093 - 2967069 - T 76 -12.1 -3.01712 | CGGCTGTTTCCAAGA CGCGACGCGCG CGC CACGCATCACG CGCGCAGCCGCAACC RD1_3093 2969512 - 2967089 - | dimethylglycine dehydrogenase, putative RD1_3094 2970883 - 2969618 - | hypothetical protein TERM 2462 2970794 - 2970775 - G 80 -10 -4.0371 | overlap 2970785 TATCGGGCACATAAA GCTCAACC CATT GGCTGAGC GCCACAGCCAGCACC TERM 2463 2970848 - 2970865 + g 70 -9.8 -3.53091 | CCGCACCCAAAGCTT GCGCGC ATAGTG GCGCGC TTTGCGAAACAGGGT RD1_3095 2972467 - 2970956 - | hypothetical protein TERM 2464 2971709 - 2971721 + g 70 -10.5 -3.51232 | opp_overlap 2971692 2971691, overlap 2971703 CGCCCGGAACCAGTC GCGCG CCT CGCGC TTGGTTTGCGCGGCG RD1_3096 2973789 - 2972800 - | ABC transporter, periplasmic TERM 2465 2973613 - 2973579 - G 76 -12.9 -3.28924 | gap 1, opp_overlap 2973579 2973578 2973607, overlap 2973594 2973596 CACCGCCCGCCAGAA CCTG-CGGGGGAGC AATATCCG GCCCCCCCGGCAGG ATTGTCACATCCAGC TERM 2466 2973818 - 2973834 + r 74 -7.2 -4.1021 | opp_overlap 2973818 TTGTCAGTATTGAAA GCGGGT CTTTC GCCCGC TTTATCGTTGTGACG RD1_3097 2974675 - 2973836 - | ABC transporter, permease protein, putative RD1_3098 2975583 - 2974675 - | ABC transporter, permease protein, putative RD1_3099 2976379 - 2975597 - | ABC transporter, ATP-binding protein, putative hydA 2977857 - 2976403 - | dihydropyrimidinase TERM 2467 2977822 - 2977837 + g 78 -4.6 -4.72986 | GTAAGTCAGATCATG CGTCAC CACG GTGCCG TTTTTGATCACAGTA RD1_3101 2979133 - 2977883 - | allantoate amidohydrolase TERM 2468 2979162 - 2979173 + H 78 -2.2 -5.27335 | overlap 2979154 TGGCAATCTGGCTCG CTGG CCGG TCAG TTTTTATTTGACCAA RD1_3102 2979322 - 2979930 + | TetR family transcriptional regulator TERM 2469 2979968 - 2979926 - T 100 -17.8 -3.55444 | opp_overlap 2979958, overlap 2979931 TGCTGACCCCTCAAA CCTAACTGCCGAAGCACTCA GGA TGAGTACTCCGGCAGCCGGG GAGAAACGGTTGTCG TERM 2470 2979963 - 2979931 - T 100 -19.3 -3.27704 | opp_overlap 2979958, overlap 2979926 ACCCCTCAAACCTAA CTGCCGAAGCACTCA GGA TGAGTACTCCGGCAG CCGGGGAGAAACGGT RD1_3103 2981292 - 2979988 - | dihydropyrimidine dehydrogenase gltD 2982626 - 2981292 - | glutamate synthase subunit beta RD1_3106 2982765 - 2982670 - | hypothetical protein TERM 2471 2982915 - 2982929 + r 88 -10 -4.4078 | opp_overlap 2982910, overlap 2982910 TTTCAGACCATGACG CGACTG CGC CAGTCG TTTTGATTCCAAGCG RD1_3107 2986286 - 2983032 - | regulator protein TERM 2472 2985363 - 2985393 + g 78 -2.5 -5.06816 | gap 2, overlap 2985369 2985377 CCCCGTTGCACATCC GGCGATCCAGACCCG AAA CGGG-C-GGGTTTCC TTTTTCTTGAGCAGT TERM 2473 2985369 - 2985388 + g 71 -5.6 -4.43037 | gap 1, overlap 2985363 2985377 TGCACATCCGGCGAT CCAGACCCG AAA CGGG-CGGG TTTCCTTTTTCTTGA TERM 2474 2986311 - 2986324 + H 71 -8.1 -3.8448 | CCCCGCAAGTCCTTT TGGCC GTCA GGCCA TTTAGTCATATGTTA RD1_3108 2986532 - 2987203 + | hypothetical protein galM 2987282 - 2988250 + | aldose 1-epimerase, putative RD1_3110 2988482 - 2988832 + | hypothetical protein TERM 2475 2988835 - 2988814 - T 100 -13.7 -5.4833 | opp_overlap 2988814 GCAGCCAACAAAAAA GGGCCAGCG CAGC CGCTGACCC TTATATCTGTTTGAG TERM 2476 2988814 - 2988835 + T 79 -11.5 -3.73008 | opp_overlap 2988814 GCAGCCAACAAAAAA GGGCCAGCG CAGC CGCTGACCC TTATATCTGTTTGAG ndk 2989282 - 2988860 - | nucleoside diphosphate kinase yheS 2989423 - 2991285 + | ABC transporter ATP-binding protein yheS, putative TERM 2477 2991282 - 2991270 - T 74 -6.9 -4.31329 | overlap 2991273 GGAAAAACTGGAAAA GACCG GCG CGGCC TAAAGCTGCAACCCT bchJ 2991923 - 2991282 - | bacteriochlorophyll 4-vinyl reductase, putative TERM 2478 2992753 - 2992763 + G 71 -6.8 -4.19735 | AATTCGTGCTGGACG GGCT GGC AGCC TTTGGTTTTGCGCCC RD1_3115 2992158 - 2992790 + | MarC family integral membrane protein, putative TERM 2479 2992955 - 2992967 + G 76 -6.2 -4.65263 | AACCCTCCAACAGGC CGCC GCATG GGCG TTTATTTTCGGCGGT RD1_3116 2992842 - 2993423 + | hypothetical protein RD1_3117 2993887 - 2993420 - | DNA polymerase III subunit chi pepA 2995398 - 2993893 - | leucyl aminopeptidase RD1_3119 2995504 - 2996631 + | hypothetical protein TERM 2480 2996837 - 2996849 + G 74 -3.3 -4.73388 | GCTGATCGTTCTGCT CGCCA CTG TCGCG TTTTTCCTGAGCCTT RD1_3120 2996628 - 2997725 + | YjgP/YjgQ family permease ost 2997722 - 2999845 + | organic solvent tolerance protein, putative surA 2999853 - 3001073 + | peptidyl-prolyl cis-trans isomerase SurA, putative pdxA 3001070 - 3002050 + | 4-hydroxythreonine-4-phosphate dehydrogenase ksgA 3002078 - 3002920 + | dimethyladenosine transferase RD1_3125 3003512 - 3002949 - | hypothetical protein TERM 2481 3003049 - 3003059 + g 79 -8.2 -4.55798 | overlap 3003048 GCACGTGGTTTGCGG CGCG GTG CGCG TTTTGGTTTGGGCTG hemK 3004551 - 3003736 - | HemK family modification methylase TERM 2482 3004223 - 3004194 - G 72 -11.5 -3.28712 | gap 1 GCCGTTCGGCCAGAA GCGTCACGATCAGG CAG CCCGATC-CGACGC CAAGATCCAGCACGG prfA 3005621 - 3004566 - | peptide chain release factor 1 TERM 2483 3004824 - 3004859 + g 70 -3.8 -4.58663 | overlap 3004825 3004826 GAGCCGCGCCTTGAG CACCTGCATCGCGATC TCGC GGTTGCGGTGCTGGGA TTTTTCGGAACTGGT RD1_3129 3006316 - 3005915 - | hypothetical protein RD1_3128 3005684 - 3005971 + | hypothetical protein RD1_3130 3007306 - 3006356 - | agmatinase, putative RD1_3131 3008274 - 3007306 - | agmatinase RD1_3132 3009447 - 3008278 - | amidohydrolase family protein, putative TERM 2484 3009327 - 3009347 + g 77 -8.2 -4.42788 | overlap 3009328 CGAATTCGCGCAGCC GCTCCGCC ACAAA GGCGGAGG TTTTATGGCATTCCA TERM 2485 3009973 - 3009918 - g 71 -5.8 -4.4017 | CGAACGTGCAGAAAA CGCGCAACAGGGCACGCTGGATGGTG TGGC CATTGGCCTGCCCGCGCTGCTGCGCG CGCTCAAGCTGCAAA TERM 2486 3010001 - 3009991 - g 73 -4.6 -4.62471 | CTCAAGCTGCAAAAA CGCG CCG CACG GGTCGGATTTGACTG mazG 3009511 - 3010326 + | nucleoside triphosphate pyrophosphohydrolase TERM 2487 3010374 - 3010408 + F 72 -11.3 -3.05993 | TTCGGCGCGCACAGT TGCGCCCGCCGGCGT GACGG ACGCGGGGCGGCGCA TGTGTATGTCGGTGC TERM 2488 3010942 - 3010922 - g 70 -4.6 -4.56775 | ACCGCCTTTGAAAAA GCGCCGGA TATCG TGCAGCGC GTGCAACAGATCGTC TERM 2489 3011219 - 3011209 - g 71 -8.2 -4.08682 | TGACAAGGAAAAATA CGGC TCC GCCG GGGCACCGCTGCATG RD1_3134 3010505 - 3011446 + | inosine-uridine preferring nucleoside hydrolase, putative RD1_3135 3011443 - 3011892 + | acetyltransferase TERM 2490 3013099 - 3013122 + G 79 -13.1 -3.53012 | opp_overlap 3013098 ATGCCTTTGACGAAT GGTGCGCGC AGTGGC GCGCGCGCC TTTCAACGCAAAGCA RD1_3136 3011937 - 3013349 + | hypothetical protein RD1_3137 3014233 - 3013346 - | hypothetical protein TERM 2491 3014209 - 3014184 - G 71 -7.5 -4.15006 | AGATGCAGCGCAAAA GCGATCAGCGC CGCA GCCCCAATCGC ATCCATGTTTGATTT rhlE2 3015598 - 3014297 - | putative ATP-dependent RNA helicase, putative TERM 2492 3015176 - 3015148 - G 75 -2.3 -4.93296 | gap 1 CCAGCACCAGAAAAA CCGCCTCATCCA GCCGCA CGG-CGCGGCGG TCCATCAGGTCCAGC TERM 2493 3015391 - 3015362 - G 72 -14.2 -2.57132 | overlap 3015361 3015364 CGTCGGCGCCAGAAC CAGCCCGCGCAC GGATTT GGGCGCGGGCCG CCCGTCGAGTTCCAG TERM 2494 3015389 - 3015364 - G 73 -13.2 -2.82623 | overlap 3015362 3015361 TCGGCGCCAGAACCA GCCCGCGCAC GGATTT GGGCGCGGGC CGCCCGTCGAGTTCC TERM 2495 3015422 - 3015441 + g 84 -11.4 -4.11216 | gap 1 CATCTGCGCCACCAG CGGCACGCC AAA GGCG-GCCG TTTTACCGGTGCCCG RD1_3139 3015841 - 3015939 + | hypothetical protein fur 3015936 - 3016349 + | ferric uptake regulation protein, putative TERM 2496 3017220 - 3017248 + G 77 -10.9 -3.58879 | overlap 3017219 GATGCGCTGACCTTG CTGGGGGCTGCGA TCA TCGTCGCCTCCGG TCTTTATACGTTGTG RD1_3141 3016425 - 3017297 + | integral membrane protein, putative eno 3017362 - 3018636 + | enolase RD1_3143 3018633 - 3019148 + | acetyltransferase, putative RD1_3144 3020214 - 3019138 - | fructosyl-amino acid oxidase, putative TERM 2497 3019664 - 3019653 - G 71 -7.2 -4.17048 | overlap 3019654 CCGTCGCCAAAAGAA CCGC GTCA GCGG GGATCGTGCCCCCTG anmK 3021455 - 3020322 - | anhydro-N-acetylmuramic acid kinase TERM 2498 3021045 - 3021021 - G 100 -9.1 -4.81249 | opp_overlap 3021022 3021023, overlap 3021023 GGCGAAATGGAAAAA CGGGGCGAGCG GCG CGCCCTCTCCG CCCATTTCCACATCC tyrS 3021520 - 3022770 + | tyrosyl-tRNA synthetase, putative TERM 2499 3023433 - 3023475 + G 74 -6 -4.46212 | CGGATGTGCCATGCC CCCGCAGGCTGGGCGAGCCC GCA GAATTCGCGCAACTGGCGGG TTTTATCGTCGAGGC hadH 3022790 - 3023545 + | 3-hydroxyacyl-CoA dehydrogenase RD1_3148 3023545 - 3024144 + | hypothetical protein TERM 2500 3024132 - 3024153 + T 74 -6.5 -4.2558 | gap 1 ATATGCCCTGCAGGT GGCGC-AGCC CTA GACTTGCGCC TTTTCCTCAAGCATC RD1_3149 3025949 - 3024141 - | ABC transporter, ATP-binding protein, putative RD1_3150 3026741 - 3026016 - | hypothetical protein RD1_3151 3027240 - 3026764 - | putative lipoprotein RD1_3152 3027440 - 3027306 - | hypothetical protein RD1_3153 3027328 - 3027873 + | hypothetical protein rpmF 3028104 - 3028310 + | 50S ribosomal protein L32 TERM 2501 3029248 - 3029269 + G 91 -7.9 -4.84359 | opp_overlap 3029244, overlap 3029250 AAGAAAAAGATCGAC CCCCGCCGT GTGA ATGGCGGCG TTTTTCTGGGGCTGA plsX 3028360 - 3029433 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 2502 3030124 - 3030105 - g 74 -5.6 -4.57073 | overlap 3030106 CATGCGGTTGAAAAA CTGGCCGC CACC GCGACCAC AGCGCTTGAGCGCGC fabH 3029430 - 3030401 + | 3-oxoacyl-(acyl-carrier-protein) synthase III ihfA 3030463 - 3030801 + | integration host factor, alpha subunit RD1_3158 3030806 - 3032023 + | hypothetical protein TERM 2503 3032169 - 3032206 + F 100 -15.7 -3.53091 | gap 1, opp_overlap 3032164 3032162 3032160 3032175 3032176, overlap 3032176 CCAAAATACAGCCGA CACCAAGCGCCCGTACTG TTG CAGTGCGGGC-CTTTGTG TTTGAGGGAGCGGAT TERM 2504 3032176 - 3032200 + F 93 -12.1 -4.32857 | opp_overlap 3032175 3032164 3032162 3032160 3032176, overlap 3032169 ACAGCCGACACCAAG CGCCCGTACTG TTG CAGTGCGGGCC TTTGTGTTTGAGGGA RD1_3160 3032224 - 3033300 + | 2'-deoxycytidine 5'-triphosphate deaminase RD1_3161 3033957 - 3033352 - | hypothetical protein RD1_3162 3034811 - 3034020 - | hypothetical protein nagZ 3035825 - 3034827 - | beta-hexosaminidase, putative RD1_3164 3036797 - 3035829 - | hypothetical protein argS 3038621 - 3036879 - | arginyl-tRNA synthetase TERM 2505 3037325 - 3037338 + g 70 -3.1 -4.70659 | gap 1 TGTCGAAATCGAAGT CGA-GC ATG GCGTCG TTTTTACGTGTCAGC RD1_3166 3038850 - 3038716 - | hypothetical protein RD1_3167 3040077 - 3038914 - | deoxyguanosinetriphosphate triphosphohydrolase, putative TERM 2506 3039258 - 3039223 - G 76 -9.6 -4.09511 | opp_overlap 3039243, overlap 3039224 AACATCGTCTGAAAA CCGGATAATCGCACGG TCTG CCGCGCGGATATCCGT CACGGTTTTCGGCTG TERM 2507 3039257 - 3039224 - G 72 -13.1 -3.05224 | opp_overlap 3039243, overlap 3039223 ACATCGTCTGAAAAC CGGATAATCGCACGG TCTG CCGCGCGGATATCCG TCACGGTTTTCGGCT RD1_3168 3040159 - 3040482 + | FeS cluster assembly HesB family protein, putative RD1_3169 3041568 - 3040519 - | hypothetical protein TERM 2508 3041520 - 3041506 - G 73 -10 -3.64283 | overlap 3041496 GAAACTGTTCAACAA CAACGC TTG GCGTTG GGACAGGTTTGGCCG RD1_3170 3041971 - 3041645 - | hypothetical protein xth 3042283 - 3043065 + | exodeoxyribonuclease III, putative RD1_3172 3043698 - 3043066 - | hypothetical protein RD1_3173 3044513 - 3043929 - | HNH endonuclease family protein, putative TERM 2509 3044261 - 3044233 - G 91 -8.1 -4.85782 | opp_overlap 3044238, overlap 3044238 TCCCTCAAAAATAAA TTAAAGCGCGTGA AGG CCACGCGCTTTTG AGGTTTCACATAGTC TERM 2510 3044238 - 3044256 + g 89 -11.7 -4.24002 | opp_overlap 3044233 3044238 CAAAAATAAATTAAA GCGCGTG AAGGC CACGCGC TTTTGAGGTTTCACA TERM 2511 3044256 - 3044238 - G 100 -12.4 -4.35747 | opp_overlap 3044238, overlap 3044233 CAAAAATAAATTAAA GCGCGTGA AGG CCACGCGC TTTTGAGGTTTCACA RD1_3174 3044777 - 3045121 + | hypothetical protein RD1_3175 3045787 - 3045122 - | phospholipase/carboxylesterase family protein RD1_3176 3046413 - 3045784 - | DNA-3-methyladenine glycosylase II, putative cobK 3047156 - 3046410 - | precorrin-6A reductase, putative TERM 2512 3047548 - 3047558 + G 74 -6.8 -4.39002 | TCCTTTCCGATTTTC CTGC TGG GCAG TTTTGTCACCGGTTT TERM 2513 3047886 - 3047870 - g 81 -13.7 -3.41602 | opp_overlap 3047861 GGCAGTTGATCACAA CACCGCG GAT CGCGGTG GCGGTCATCTGTGCC RD1_3179 3047233 - 3048444 + | MSF transporter protein, permease component, putative RD1_3180 3049241 - 3048462 - | hypothetical protein TERM 2514 3048595 - 3048645 + g 72 -12.6 -3.06796 | gap 1 TCCGTGATGGCCGGT TTCGCCGCCTCCCCCAAGG-TGC GTTTCA GCAGCTTTGGGGCAGGCAGCGCA TTGAGTGCCGTGCGC RD1_3181 3049396 - 3049238 - | hypothetical protein RD1_3182 3051012 - 3049393 - | alpha-isopropylmalate/homocitrate synthase family transferase TERM 2515 3049527 - 3049562 + g 70 -10.4 -3.47617 | gap 1, overlap 3049519 CTTCGCTGTCGATGA TCACGC-GGGTGACAGC CTC GGTGCCGCCCTGCGTGA TTCTGACTTTGAAAT TERM 2516 3049930 - 3049942 + g 73 -4.7 -4.58395 | opp_overlap 3049930 GAGGATCAGACCCAA GGCCG GAT CGCCC TTTTTCACCACTAGC TERM 2517 3050742 - 3050761 + g 76 -9.2 -4.07568 | opp_overlap 3050742 TGCCCGCGTTCAAAA CGGCGGCG AGCA CGTCGTCG TTTTCAGCCGAGAGG TERM 2518 3051109 - 3051145 + r 91 -12.3 -4.07568 | GTGACACTGTGGTAA CCGTCACAGCATCGC GCATCAG GCGGTGTCGTGACGG TTTTGAACGGCCCCG cysS 3052696 - 3051275 - | cysteinyl-tRNA synthetase TERM 2519 3051393 - 3051422 + g 73 -4.2 -4.6468 | gap 1, overlap 3051395 TCGCGTGTTCGATCC GACGT-CGCCCAG TCCTT TTGGGCGCGCGCC TTTTCTATGCTTTCG RD1_3184 3052708 - 3052866 + | hypothetical protein aspC 3052918 - 3054108 + | aspartate aminotransferase RD1_3187 3054396 - 3054148 - | hypothetical protein TERM 2520 3054679 - 3054696 + G 74 -11.3 -3.53224 | GGCGCGGTTCAGGGC GCGGATG GGCG CATCCGC TTTCCCCGCGCGCTG RD1_3188 3054433 - 3055971 + | trimethylamine methyltransferase family protein RD1_3189 3056046 - 3056177 + | hypothetical protein RD1_3190 3056481 - 3056248 - | hypothetical protein TERM 2521 3056516 - 3056502 - R 79 -7.8 -4.41494 | TACTCCCAAGTAAAA GCGGAA CAT CTCCGC GATCACAGGGATGAC RD1_3191 3056746 - 3056552 - | hypothetical protein RD1_3192 3057201 - 3056743 - | acetyltransferase, putative TERM 2522 3057307 - 3057290 - R 100 -10.5 -5.36441 | opp_overlap 3057288 GGCCGACAGAAAAAA GGGGCCC CGAA GGACCCC TGTGAGTTTCGATGT TERM 2523 3057466 - 3057522 + r 89 -8.8 -4.56597 | gap 1, opp_overlap 3057482, overlap 3057468 3057469 AATCCTGTGGATTTC CGA-CGCGTGAGACAGAGCGGAAAACA TCTT TGTTTTCTGCGGAGTCTCACCCGCTTG TTTTTGAGAAGCCGG TERM 2524 3057468 - 3057519 + r 85 -9.4 -4.40561 | opp_overlap 3057482, overlap 3057466 3057469 TCCTGTGGATTTCCG ACGCGTGAGACAGAGCGGAAAACA TCTT TGTTTTCTGCGGAGTCTCACCCGC TTGTTTTTGAGAAGC TERM 2525 3057469 - 3057518 + r 83 -12.9 -3.23855 | opp_overlap 3057482, overlap 3057468 3057466 CCTGTGGATTTCCGA CGCGTGAGACAGAGCGGAAAACA TCTT TGTTTTCTGCGGAGTCTCACCCG CTTGTTTTTGAGAAG TERM 2526 3057599 - 3057617 + r 91 -11.6 -4.26903 | opp_overlap 3057587 AGACCGCGACCCCTA CACGCCCC GTG GGGGCGCG TTTTCCTCAGCTACA nrdJ 3061268 - 3057624 - | ribonucleotide-diphosphate reductase subunit alpha RD1_3194 3061797 - 3061615 - | hypothetical protein TERM 2527 3061988 - 3061970 - R 72 -12.4 -2.64051 | overlap 3061967 3061966 TGATGAGACAATCTA TGCGACCC GCC GGGCCGCA CGTGATCAAGGTGAA TERM 2528 3062095 - 3062113 + r 76 -5.3 -4.81249 | gap 1, overlap 3062080 CGCCACGCTCCGACT GGC-GTCT CTTT AGACCGCC TTTTTCGGTTTGAAA RD1_3196 3062625 - 3062134 - | hypothetical protein RD1_3197 3063128 - 3062592 - | cold shock protein TERM 2529 3062637 - 3062654 + gr 77 -8.3 -4.19817 | CCATGCAAAGACCTC CGCCGCC ATAT GGCCGCG TTTTCCCTCGATCAC pdxH 3064015 - 3063410 - | pyridoxamine 5'-phosphate oxidase TERM 2530 3063797 - 3063810 + g 73 -9.5 -3.86106 | CGCGCCATCCAGTTC GCGCG CCTT CGCGC TTTCGTAGTTGGTGT TERM 2531 3064337 - 3064324 - g 70 -5.2 -4.57569 | CGAGGCGCTGAAAAA GCGG GTCGGG CCGC TGGCGGAAAAGCTGG TERM 2532 3064375 - 3064348 - g 71 -7.7 -4.07568 | gap 1 GCCGCTGGCGGAAAA GCTGGGCAGCGA TATCG TC-CTGCCCTGC GATGTAAGCGATGAG fabI-2 3064112 - 3064987 + | enoyl-(acyl carrier protein) reductase RD1_3200 3064992 - 3065606 + | threonine efflux protein gpt 3065612 - 3066142 + | xanthine-guanine phosphoribosyltransferase aspC 3066161 - 3067336 + | hypothetical protein RD1_3203 3067420 - 3069258 + | peptidyl-prolyl cis-trans isomerse D, putative trpE 3069265 - 3070776 + | anthranilate synthase component I TERM 2533 3070983 - 3071026 + G 71 -5.3 -4.30576 | gap 3 TGTGGAGATCGTGCG GCGTCTGCTGCGC-GCGCCG CAACTGT CGGCCCTGCGCGG--GACGC TTTTGGTGGTGCCGA RD1_3206 3070780 - 3071817 + | hypothetical protein TERM 2534 3072094 - 3072108 + G 72 -11.4 -3.29576 | overlap 3072092 3072090 ATCAGCAGCCCTCAG GCGCTG TGG CAGCGC TATATTCTTGGCTTT TERM 2535 3072619 - 3072605 - g 74 -7.1 -4.42653 | ATTTCATTCAGAAAA CCGCA CTTAT TGCGG CCCTGACCGTGTTGT RD1_3207 3072052 - 3074097 + | GGDEF/EAL domain-containing protein RD1_3208 3076059 - 3074113 - | hypothetical protein trpG 3076194 - 3076775 + | anthranilate synthase component II TERM 2536 3077153 - 3077126 - g 79 -9 -4.14511 | AACCTCAGTTCAAAA TCCGGCGCGGCG GATG CGCTGAGCCAGA TGGGTCTGAACGTCA trpD 3076784 - 3077791 + | anthranilate phosphoribosyltransferase TERM 2537 3078333 - 3078354 + G 89 -10.1 -4.62069 | gap 1, opp_overlap 3078320, overlap 3078329 AACCGCGCATCCCTC GCCGCTGTCG GCG CGGC-GCGGC TTTTTCGGCTCCCGC ung 3077794 - 3078450 + | uracil-DNA glycosylase trpC 3078447 - 3079259 + | indole-3-glycerol-phosphate synthase moaC 3079261 - 3079740 + | molybdenum cofactor biosynthesis protein C moaA 3079737 - 3080909 + | molybdenum cofactor biosynthesis protein A, putative TERM 2538 3081208 - 3081231 + G 84 -16.7 -2.70932 | opp_overlap 3081193, overlap 3081205 3081204 CGCTTGGCGGTGCCG CGCGCGGCG GATTTA CGCCGCGCG TGATTGAAGGCGACA lexA 3080979 - 3081680 + | LexA repressor com 3083785 - 3081674 - | competence protein, putative TERM 2539 3081868 - 3081815 - G 71 -9 -3.74693 | gap 1, overlap 3081817 GCGTATCGGATCAAA CACATCGCAGTCGAACCCGGTCG GGTTCAGTT CGACCGAGCT-GACCACGATGTC CCGCGCGTCACACCC TERM 2540 3081866 - 3081817 - G 74 -11.6 -3.4582 | gap 1, overlap 3081815 GTATCGGATCAAACA CATCGCAGTCGAACCCGGTCG GGTTCAGTT CGACCGAGCT-GACCACGATG TCCCGCGCGTCACAC TERM 2541 3081932 - 3081957 + g 77 -8.2 -4.36914 | gap 1 ATGCACGAGGTGGCC GCC-CTCCGGC AGCAC GCCGGCGAGGC TTTTATCCCAACGCG TERM 2542 3083051 - 3083030 - G 73 -10.8 -3.60296 | GACCGCCACCGCAAA GCCGCCGG TATCGC CCGGCAGC ACGTTCAGGATGTGT TERM 2543 3083233 - 3083205 - G 73 -4.5 -4.67038 | overlap 3083207 CGCTGAAAATCAAAA CCGCCCGGT TCAACCGGCCC ACCGGGGGG CGACAAATGCCCCGT gltX 3083810 - 3085210 + | glutamyl-tRNA synthetase TERM 2544 3085211 - 3085227 + F 71 -10.1 -3.55761 | opp_overlap 3085198 GATGCTGCTGTTTGA CTGCACC ACA GGTGCGG TTTCAGCGGTGGATA gltA 3085317 - 3086612 + | citrate synthase TERM 2545 3086638 - 3086666 + F 100 -14.5 -4.37734 | opp_overlap 3086638 ATTGGAAGCATGAGA CGGGCTGGGGCGT TTT GCGTTCCGGCCCG TTTTCCATTGTTCTA RD1_3220 3086849 - 3087217 + | hypothetical protein TERM 2546 3087250 - 3087238 - T 74 -10.5 -3.53444 | opp_overlap 3087238 TCAGCGCCCCTCAAA GCGCG CGG CGCGC TTTTCAGTGAAGGCC TERM 2547 3087238 - 3087250 + T 86 -10.5 -4.18018 | opp_overlap 3087238 TCAGCGCCCCTCAAA GCGCG CGG CGCGC TTTTCAGTGAAGGCC paaB 3087999 - 3087223 - | enoyl-CoA hydratase/isomerase family protein cycL 3088525 - 3088070 - | cytochrome c-type biogenesis protein cycK 3090495 - 3088522 - | cytochrome c-type biogenesis protein TERM 2548 3090105 - 3090092 - G 70 -4.5 -4.50761 | opp_overlap 3090103 3090104, overlap 3090103 ATGAAGGCAAAGAAA GCGAC ACCA ATCGC CGCCTGCACACTCAG TERM 2549 3090381 - 3090405 + g 93 -14.3 -3.85817 | TTGCGGCAGGTTCTG CGACGGCCATC CAG GATGGCCATCG TTTGTGGGCACCAAT RD1_3224 3091144 - 3090554 - | hypothetical protein RD1_3225 3091689 - 3091135 - | hypothetical protein cycJ 3092269 - 3091826 - | cytochrome c-type biogenesis protein CcmE argC 3093305 - 3092277 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 2550 3092627 - 3092642 + g 80 -10.4 -4.10161 | TGAACTGGATTTGCA CTGGCC GCCC GGCCAG TTTTGAAAACTCCTG TERM 2551 3093217 - 3093202 - G 70 -4.6 -4.56597 | opp_overlap 3093202 3093203, overlap 3093203 CCGGCTTTGGAAAAA GCACCG AGCG CGGTGA TTTTCAGCGCAGAGT murI 3094145 - 3093336 - | glutamate racemase, putative RD1_3229 3095054 - 3094170 - | acyltransferase domain-containing protein TERM 2552 3094543 - 3094530 - G 76 -9.5 -4.07885 | overlap 3094531 CATGGGTTTCGAAAA CGGCC GCGC GGCCG TGCTGACCGTGCCGC RD1_3230 3098525 - 3095127 - | indolepyruvate ferredoxin oxidoreductase TERM 2553 3095189 - 3095201 + g 76 -6.9 -4.5287 | opp_overlap 3095180, overlap 3095188 3095196 ACAAAAGCTCTTCGC GCCGT TTG GCGGC TTTTGCTTCATTTGC TERM 2554 3095546 - 3095517 - G 78 -10.1 -3.95022 | opp_overlap 3095516 3095515 CGGAGCAAGATTAAA GCTGAGTTTGAAA TCTC CTTCAAACTCCGC CATTGCTTTTTCGCG TERM 2555 3095662 - 3095672 + g 70 -3.2 -4.72272 | TTGTCGTCATCAATC CTGT CGA GCAG TTTTTGATAGCGCCG TERM 2556 3096700 - 3096710 + g 79 -8.2 -4.56597 | AACAGCCCGCGTTTA CGGC GTC GCCG TTTTTCCGCCGCGCA RD1_3231 3098694 - 3099599 + | LysR family transcriptional regulator TERM 2557 3099646 - 3099680 + F 75 -11.5 -3.39471 | opp_overlap 3099654 3099668 ACATGTCTTCATTTG TAGGCAAACTGCCTT GATTG AAGGCAGGTTGCCCA TTAATTCACGTTTGT TERM 2558 3099672 - 3099654 - f 70 -8.9 -3.65351 | opp_overlap 3099646, overlap 3099668 TCATTTGTAGGCAAA CTGCCTT GATTG AAGGCAG GTTGCCCATTAATTC TERM 2559 3099743 - 3099763 + F 100 -14 -5.75945 | CTCCCTGTTGGACTT GGCCGAGC TTCGC GCTCGGCC TTTTTTTTCGCGCAT TERM 2560 3101180 - 3101224 + G 73 -10 -3.66378 | gap 2, overlap 3101169 CGCATTCCCGGCATT GGCGCGGGCATTGTGCGCGTGC ATG GCAC-CG-ACAAGGCGCTCGCC TTTACCTCGGATGTG purL 3099884 - 3102043 + | phosphoribosylformylglycinamidine synthase II RD1_3233 3103392 - 3102127 - | VWA domain CoxE-like family protein RD1_3234 3104349 - 3103441 - | hypothetical protein TERM 2561 3104557 - 3104543 - H 73 -5.6 -4.56883 | overlap 3104545 CCAAGACGAAACAAA CGCCAG CCT CTGGTG CCGCGCGCGTGCCTA pyrC 3104588 - 3105622 + | dihydroorotase pyrE 3105675 - 3106352 + | orotate phosphoribosyltransferase dnaB 3106588 - 3108081 + | replicative DNA helicase TERM 2562 3108322 - 3108266 - f 95 -10.4 -4.62069 | gap 2, opp_overlap 3108265, overlap 3108268 3108275 GCGTCATGCGAAAAA CCTGAATCACGTAACGCTGCCTGAAATC AAG GATTTCA-AC-GCGTTACGTGATACTCG ATGCTTCAGGTATTT RD1_3238 3108363 - 3108932 + | hypothetical protein RD1_3239 3109038 - 3109136 + | hypothetical protein TERM 2563 3109286 - 3109266 - g 74 -11.1 -3.53012 | overlap 3109249 GCCGCTGTCGTCAAA GCCAACGCC TAT GGCCTTGGC GTAGGCACTGCGGCA TERM 2564 3109295 - 3109330 + G 74 -5.5 -4.55697 | gap 2, opp_overlap 3109249, overlap 3109296 3109297 CCTTGGCGTAGGCAC TG-CG-GCATCGGCC CTTGCTGA GGCCGGTGCGCGTCA TTTCTTTGTCGCCGT alr 3109167 - 3110201 + | alanine racemase RD1_3241 3110198 - 3110971 + | hypothetical protein TERM 2565 3111211 - 3111225 + G 74 -11.4 -3.54424 | TTTGGCATGCTGTTT CAGGGC TCC GCCCTG TTTGACAGCCTGCCC RD1_3243 3110968 - 3111714 + | ABC transporter, ATP-binding protein, putative RD1_3244 3111895 - 3112548 + | hypothetical protein TERM 2566 3112567 - 3112534 - f 74 -10.1 -3.72576 | opp_overlap 3112533 TTTGGCTGGATGAAA CGCCGCGCGGCCTGA CCGG TCCGTCCCCGCAGCG GTTGCTGCAAAATAT TERM 2567 3112621 - 3112584 - f 100 -17.1 -3.39908 | opp_overlap 3112590, overlap 3112585 3112590 3112606 TTGCTGCAAAATATA TCAAAACAGGCCGCGGA GAAA TCCGGGGCCTGTTTTGC GGCGCCAGCGCGACA TERM 2568 3112620 - 3112585 - f 100 -20.6 -2.63623 | opp_overlap 3112590, overlap 3112584 3112590 3112606 TGCTGCAAAATATAT CAAAACAGGCCGCGGA GAAA TCCGGGGCCTGTTTTG CGGCGCCAGCGCGAC TERM 2569 3112615 - 3112590 - f 100 -14.7 -4.48903 | opp_overlap 3112590, overlap 3112585 3112584 3112606 CAAAATATATCAAAA CAGGCCGCGGA GAAA TCCGGGGCCTG TTTTGCGGCGCCAGC TERM 2570 3112590 - 3112615 + F 100 -14.7 -4.07568 | opp_overlap 3112590 3112585 3112584 3112606 CAAAATATATCAAAA CAGGCCGCGGA GAAA TCCGGGGCCTG TTTTGCGGCGCCAGC radA 3112701 - 3114062 + | DNA repair protein RadA TERM 2571 3114311 - 3114327 + G 76 -5.8 -4.63184 | gap 1, overlap 3114321 3114322 CGAATTGTCGATCAT CGG-GGC CTTT GCCGCCG TTTTTGCGGTCGCTT RD1_3246 3114090 - 3114644 + | CvpA family protein TERM 2572 3115157 - 3115146 - g 71 -7.2 -4.25283 | opp_overlap 3115153 ACCGCCGGATCAAAA GGCC AGAC GGCC ATCCGCGACGTACAG TERM 2573 3115261 - 3115275 + G 81 -8.6 -4.58663 | overlap 3115250 TGCGCCGCGAGCTGA TCGAAC GCG GTTCGA TTTTTCAAAGCTCGT RD1_3247 3114831 - 3116315 + | amidophosphoribosyltransferase TERM 2574 3116789 - 3116820 + G 78 -2.9 -5.03314 | gap 1 TGATCACCTTTGTCG CGCC-CTTGCTCGG CACGA CCGGACAGGCGGTG TTTTTTGACGATGCG RD1_3248 3116425 - 3117060 + | oxidoreductase, putative surE 3117149 - 3117934 + | acid phosphatase SurE, putative TERM 2575 3118271 - 3118291 + G 89 -12.5 -4.08216 | overlap 3118272 ACCGCCACAGCCGAT TGGTGCGCG AGG CGCGCACCC TTTTCGAAGAGATGA TERM 2576 3118272 - 3118290 + G 83 -16 -3.04715 | overlap 3118271 CCGCCACAGCCGATT GGTGCGCG AGG CGCGCACC CTTTTCGAAGAGATG TERM 2577 3118533 - 3118545 + G 71 -6.2 -4.41302 | TGAGTATGACGAGCT GCGG CAAGT CCGC TTTGTTCCTTTGCTG pcm 3117943 - 3118584 + | protein-L-isoaspartate O-methyltransferase lysM 3118658 - 3119860 + | LysM domain-containing protein RD1_3252 3120783 - 3119938 - | hypothetical protein tatC 3121628 - 3120780 - | Sec-independent protein translocase TatC, putative TERM 2578 3120817 - 3120837 + g 74 -12.5 -3.25942 | overlap 3120835 TCATAATAGCCTTCG GCGCGCAGC TTG GCTTCGCGC TTGGTCTCCACGCGT tatB 3122080 - 3121625 - | Sec-independent protein translocase protein tatB-like protein, putative TERM 2579 3122066 - 3122095 + g 76 -5.7 -4.70659 | gap 1, opp_overlap 3122071, overlap 3122068 CAGCATCTCCGTCCA GCCAAGGTC-GAAC ATG GATCAGACCTTGTC TTTTTCAGTCTCAGG RD1_3255 3122296 - 3122084 - | twin arginine-targeting protein translocase TERM 2580 3122467 - 3122440 - H 70 -7.1 -4.07568 | opp_overlap 3122440 3122445 TTTGCTCTCGCAAAA TCCAACTGACA GGTTTA TGTCAGTTGCA TCCTGTCAGAAGCAT RD1_3256 3122515 - 3122844 + | hypothetical protein TERM 2581 3122901 - 3122868 - g 76 -13.2 -3.04269 | gap 1, opp_overlap 3122891 TTGACATCATACAGA TCCTGCGCGACGGCA AATTG CACCG-CGCGCAGGA CATGGCCGCGCAGCT RD1_3257 3122831 - 3123496 + | transcriptional regulator, putative RD1_3258 3123909 - 3123550 - | hypothetical protein RD1_3259 3124252 - 3123902 - | hypothetical protein RD1_3260 3125358 - 3124252 - | iron ABC transporter, ATP-binding protein RD1_3261 3126268 - 3125489 - | oxidoreductase, putative TERM 2582 3125582 - 3125570 - G 78 -2.6 -5.0916 | overlap 3125571 CTGCGAACATAAAAA CGCA CAGGT CGCG CCAAACTCCTCGGCT TERM 2583 3125987 - 3126005 + g 73 -10.2 -3.61715 | overlap 3125977 ATCCTGCCAGAGGCC CGGCGGTG GGC CACCGGCG TTGTTGACCAGAATG TERM 2584 3126333 - 3126309 - H 78 -6.4 -4.77036 | gap 1, overlap 3126313 3126331 GCGTAGCATCAAAAA CGCATG-CTGC ACCA GCAGACAAGCG ACATATACCGCTGCT TERM 2585 3126428 - 3126408 - g 90 -6 -5.24989 | overlap 3126409 CGATACACCAAAAAA CCGCGCGG ATTTA CCGCCCGA AATCGCCCGGCGGCG TERM 2586 3126901 - 3126885 - g 72 -2.1 -4.75309 | overlap 3126886 CGAAATTCAAGAAAA CCTCGCC ATT GACGTGA CCCCCGCCAGTTGGC prfC 3126388 - 3127995 + | peptide chain release factor 3 TERM 2587 3128151 - 3128166 + F 70 -6.8 -4.09685 | gap 1, opp_overlap 3128139, overlap 3128151 GCACGCACAGCATGT C-GCGGC AGA GCCGCCG TTTTGGGCCATGCGG TERM 2588 3128335 - 3128359 + G 89 -15.7 -3.33261 | CAAGCTGGTGCCATC CCTCCCGCCCT CGC AGGGCGGGACG TTCTGGGCATTGCGC TERM 2589 3129581 - 3129562 - g 78 -4.8 -4.83615 | overlap 3129564 GAGCCCGCACAAAAA CCTGCCCG CTCC CGGGGCGG TCGCAACCGCAACGC rhlE 3128176 - 3129693 + | ATP-dependent RNA helicase, putative RD1_3264 3129835 - 3129716 - | hypothetical protein TERM 2590 3129819 - 3129847 + g 100 -16.7 -5.63504 | opp_overlap 3129818 3129817 3129816 GCAACCAGAAAATTG CCGGGCCGCCC TATCAAC GGGCGGTCCGG TTTTTTTGTCAGCTT RD1_3265 3131523 - 3129856 - | metallo-beta-lactamase family protein TERM 2591 3131122 - 3131110 - G 70 -4.1 -4.61231 | GGATATCGGCAAAAA GCTCA CTT TGAAC GGCCCCGCCGAAACC RD1_3266 3132301 - 3131528 - | pantothenate kinase TERM 2592 3131666 - 3131678 + g 71 -6.2 -4.32951 | overlap 3131663 CACGCGCATATCGCG GGCG CGTTC CGCC TTTATTCGTTCGCAT RD1_3267 3133081 - 3132320 - | biotin--acetyl-CoA-carboxylase ligase, putative TERM 2593 3132944 - 3132918 - G 74 -12.9 -3.18264 | overlap 3132896 3132919 GCCGGCATCGACCAA GGCCGCCCGCG TCGCC CGCGGGCAGCG GTCTGACGCTGCGCA TERM 2594 3132943 - 3132919 - G 78 -16.4 -2.50816 | overlap 3132896 3132918 CCGGCATCGACCAAG GCCGCCCGCG TCGCC CGCGGGCAGC GGTCTGACGCTGCGC TERM 2595 3132974 - 3132964 - G 70 -4.6 -4.57073 | overlap 3132965 GACGCTGCGCAAAAA CCCA CAG CGGG GTTGCGGCATGCGGG nuoN 3134557 - 3133115 - | NADH dehydrogenase subunit N nuoM 3136111 - 3134570 - | NADH dehydrogenase subunit M TERM 2596 3135626 - 3135614 - G 70 -4.1 -4.59089 | GAAGGTATAAAGAAA GAACT TGA AGCTC GCATAGATGCGGTTC TERM 2597 3136070 - 3136049 - G 76 -6.5 -4.56775 | overlap 3136064 3136065 ATCGCCGCGCAAAAA GACCGCG AGGATCAA CGCGGCC ATGGCCGGAATGAAG nuoL 3138216 - 3136111 - | NADH dehydrogenase subunit L TERM 2598 3138140 - 3138109 - G 74 -12.2 -3.2614 | opp_overlap 3138109 3138108, overlap 3138096 3138111 CAGCGCCGACAGGAA CAGCAGCCCGGTGG CGAT CCAACAGGCTGCGG CTTCTCCGATGAATT TERM 2599 3138138 - 3138111 - G 78 -13.4 -3.19602 | opp_overlap 3138109 3138108, overlap 3138109 3138096 GCGCCGACAGGAACA GCAGCCCGGTGG CGAT CCAACAGGCTGC GGCTTCTCCGATGAA nuoK 3138653 - 3138348 - | NADH dehydrogenase subunit K TERM 2600 3138664 - 3138677 + r 81 -8.1 -4.33928 | overlap 3138658 ATCATGTTGTCCCTC CGGGA TGTA TCCCG TTTGTCTTTACCCTG RD1_3272 3139275 - 3138700 - | hypothetical protein TERM 2601 3139253 - 3139235 - G 71 -8.8 -3.81137 | overlap 3139246 GTTGAAATATCCAAA TGCCGCGA AAA CCGCGACA GCGATGGCCACCAGA nuoJ 3139893 - 3139291 - | NADH dehydrogenase subunit J RD1_3274 3140310 - 3139894 - | carboxymuconolactone decarboxylase nuoI 3140801 - 3140307 - | NADH dehydrogenase subunit I nuoH 3141840 - 3140803 - | NADH dehydrogenase subunit H RD1_3277 3142188 - 3141847 - | putative lipoprotein nuoG 3144200 - 3142185 - | NADH dehydrogenase subunit G RD1_3279 3144736 - 3144242 - | hypothetical protein RD1_3280 3145139 - 3144765 - | hypothetical protein RD1_3281 3145600 - 3145100 - | hypothetical protein nuoF 3147107 - 3145812 - | NADH dehydrogenase I subunit F RD1_3283 3147368 - 3147120 - | hypothetical protein RD1_3284 3148094 - 3147396 - | hypothetical protein TERM 2602 3147712 - 3147728 + g 81 -5.7 -4.81083 | overlap 3147703 3147702 TTCTTTTCGGCCTTC GGCGCGG GGG CCGCCTC TTTTTCGTACTTCCA nuoE 3149203 - 3148124 - | NADH dehydrogenase subunit E RD1_3286 3149308 - 3149216 - | hypothetical protein nuoD 3150528 - 3149305 - | NADH dehydrogenase subunit D RD1_3288 3150706 - 3150530 - | hypothetical protein RD1_3289 3151743 - 3150766 - | hypothetical protein TERM 2603 3151452 - 3151464 + g 74 -3.3 -4.8622 | overlap 3151462 TGCGCGTATCCGCCC GGGAC ATC GTCGC TTTTTCCTTGAACCG nuoC 3152339 - 3151740 - | NADH dehydrogenase subunit C nuoB 3152912 - 3152379 - | NADH dehydrogenase subunit B nuoA 3153596 - 3153231 - | NADH dehydrogenase subunit A RD1_3293 3153832 - 3154356 + | hypothetical protein TERM 2604 3154366 - 3154405 + T 86 -10.2 -4.07885 | gap 2, opp_overlap 3154373 3154375, overlap 3154369 3154373 CCCTGATCGAGGCAT CGAGA-C-AGACCGCAGG TTTACC CCTGCGGTCTTGATCTTG TTTTCAAACAGCGTG TERM 2605 3154369 - 3154402 + T 77 -8.3 -4.17048 | gap 2, opp_overlap 3154373 3154375, overlap 3154366 3154373 TGATCGAGGCATCGA GA-C-AGACCGCAGG TTTACC CCTGCGGTCTTGATC TTGTTTTCAAACAGC TERM 2606 3154396 - 3154373 - T 81 -13.9 -2.91912 | opp_overlap 3154369 3154366 3154373, overlap 3154375 CGAGGCATCGAGACA GACCGCAGG TTTACC CCTGCGGTC TTGATCTTGTTTTCA TERM 2607 3154373 - 3154396 + T 89 -13.9 -3.53836 | opp_overlap 3154373 3154375, overlap 3154369 3154366 CGAGGCATCGAGACA GACCGCAGG TTTACC CCTGCGGTC TTGATCTTGTTTTCA RD1_3294 3155211 - 3154429 - | enoyl-CoA hydratase TERM 2608 3154900 - 3154882 - G 77 -11 -3.57462 | GACGCCACCGCCAAA GGCATTGC CCT GCAACGCC CCGATCAGTGGTTTG mvaB 3156093 - 3155221 - | hydroxymethylglutaryl-CoA lyase TERM 2609 3155501 - 3155477 - G 71 -6.4 -4.25104 | gap 1 TTTGTGTCATGAAAA TGCCCGGCCAG CCGA CCGACCG-GCA CCACATCGCGCACCG gst 3156787 - 3156122 - | glutathione S-transferase, putative mccA 3158721 - 3156784 - | methylcrotonyl-CoA carboxylase, alpha subunit TERM 2610 3157531 - 3157510 - G 72 -13 -3.06133 | TAATGCCCGACGCAA CCGCGCCA GCGCAA TGGCGCGG GTGGGGCCAGCGACG mccB 3160403 - 3158799 - | methylcrotonyl-CoA carboxylase, beta subunit TERM 2611 3160024 - 3160035 + g 70 -3.6 -4.59773 | overlap 3160019 GCGGCGATTTCCTGA GCGC GCAG GTGC TTTTTGACACTCAGC RD1_3299 3160770 - 3160450 - | hypothetical protein TERM 2612 3161452 - 3161440 - g 79 -9.1 -4.28361 | TCAACGGCAGCAAAA TCGGC ACC GCCGA GATTGACCCCGTGCT ompW 3160893 - 3161498 + | outer membrane protein W, putative ivd 3162708 - 3161545 - | isovaleryl-CoA dehydrogenase TERM 2613 3162740 - 3162729 - R 75 -5.8 -4.58685 | overlap 3162733 AAACCTTCTGAAAAA CCGA CTGC TCGG CAATTTTGAGTGTCC TERM 2614 3162898 - 3162863 - R 100 -10.5 -5.74086 | gap 2, overlap 3162866 3162867 3162870 AAACCAAATAAAAAA GAATGCAGGCGGCGCAG CCGC CTGCGCCGCC-GGAT-C ACGCAGCCTTTTGAT TERM 2615 3162888 - 3162866 - R 100 -14.8 -4.88687 | overlap 3162863 3162867 3162870 CCAAATAAAAAAGAA TGCAGGCGGC GCA GCCGCCTGCG CCGCCGGATCACGCA TERM 2616 3162887 - 3162867 - R 100 -18.3 -3.50772 | overlap 3162866 3162863 3162870 CAAATAAAAAAGAAT GCAGGCGGC GCA GCCGCCTGC GCCGCCGGATCACGC TERM 2617 3162893 - 3162870 - R 100 -19.6 -2.84096 | overlap 3162867 3162866 3162863 ATAAAAAAGAATGCA GGCGGCGCAG CCGC CTGCGCCGCC GGATCACGCAGCCTT RD1_3302 3164093 - 3162897 - | aminotransferase TERM 2618 3162996 - 3162975 - G 71 -6.5 -4.18197 | gap 1 ATCCTCCAGCGAAAA CGTCA-GCGG CAC CCGCATGTCG ACAACACCGGCCAAG gph 3164806 - 3164141 - | phosphoglycolate phosphatase TERM 2619 3164347 - 3164315 - G 100 -21.9 -2.98015 | opp_overlap 3164331 GCCAATCAGCACACA GCGGCGCGGATCGCC CCC GGCGCGCCGCGCCGC TTCAAACAGCGGTTC TERM 2620 3165135 - 3165123 - g 73 -4.7 -4.58283 | overlap 3165125 GAACTGGTGCAAAAA GCGGC GCT GTCGC ATGACGCCTCCGCCA glmU 3164940 - 3166292 + | UDP-N-acetylglucosamine pyrophosphorylase, putative glmS 3166295 - 3168115 + | D-fructose-6-phosphate amidotransferase TERM 2621 3168203 - 3168167 - f 74 -10.2 -3.59979 | gap 1 GGGTGCGATTTCAAA TCGCTGCGGCCCCGCAA CAGC CTGCAAAGCC-CAGCGA TGACCTGAAAAAACA RD1_3306 3168343 - 3168897 + | pyridoxamine 5'-phosphate oxidase family protein, putative moaA 3168991 - 3169998 + | molybdenum cofactor biosynthesis protein A TERM 2622 3170237 - 3170260 + G 70 -4.4 -4.46926 | gap 1, opp_overlap 3170236 3170237, overlap 3170238 ACTGATCGGTGAAAT GGGGCG-GCAG ATG CCGCGCGCCCA TTTTCTGATCACCTC TERM 2623 3171058 - 3171072 + G 77 -7.8 -4.35524 | overlap 3171059 GCGGGTCGGGTGTCA TCTCCG GTC CGGAGG TTTTCAATTTCAGCG kdtA 3170007 - 3171302 + | 3-deoxy-D-manno-octulosonic acid transferase lpcC 3171302 - 3172372 + | lipopolysaccharide core biosynthesis mannosyltransferase RD1_3310 3173632 - 3172469 - | amidohydrolase family protein, putative TERM 2624 3173824 - 3173851 + r 80 -9.2 -4.08216 | gap 1, opp_overlap 3173826 TGGTGTTGGTTGTAA CAGGGCAATGGCG CAC TGCT-TTGCCCTG TTTTCAGCAGCATCG argE 3175151 - 3173988 - | acetylornithine deacetylase TERM 2625 3176149 - 3176127 - H 78 -7 -4.56597 | opp_overlap 3176117 CGTCCGGCGGAAAAA CCCGCCTT TGACCGG AAAGCGGG TGATCAGGTTCTTGA TERM 2626 3176674 - 3176686 + H 74 -4.8 -4.82901 | overlap 3176665 GCGTGCCTCGGCCTC GCTC CGGTT GAGC TTTTTGTGCAAGCGC TERM 2627 3177554 - 3177538 - g 74 -5.8 -4.45544 | overlap 3177543 GGGCACCAAGGAAAA CGAAGC GGCAA GCCTCG TGCTGGAATCCCTCG RD1_3314 3177368 - 3179098 + | peptide ABC transporter, periplasmic substrate-binding protein RD1_3315 3179220 - 3180227 + | ABC transporter, permease protein, putative TERM 2628 3180745 - 3180768 + GT 71 -12.4 -2.50492 | opp_overlap 3180739, overlap 3180742 CGCCAACCACTGCGC GCGGCCTTCG GCCC CGAAGGCGGC ATGTTCATCCTGATC RD1_3316 3180184 - 3181197 + | ABC transporter, permease protein, putative RD1_3317 3182576 - 3181284 - | hypothetical protein TERM 2629 3182752 - 3182809 + r 73 -5.2 -4.62069 | gap 3, opp_overlap 3182752 3182762, overlap 3182753 3182762 GAAATACCTGAAACA TCGCATATCACGTAACGC-GT-TGAAATC CTT GATTTCAGGCAGCGTTACGTGAT-TCAGG TTTTTCGCATGACGC TERM 2630 3182995 - 3182974 - R 100 -13.7 -4.77896 | opp_overlap 3182974 CAATCAATTGAAAAA GCCCGACAC CAAT GTGCCGGGC TTTCATTCATTTCAC TERM 2631 3182974 - 3182995 + r 85 -11.5 -4.04394 | opp_overlap 3182974 CAATCAATTGAAAAA GCCCGACAC CAAT GTGCCGGGC TTTCATTCATTTCAC pntB 3184548 - 3183052 - | NAD(P) transhydrogenase, beta subunit pntA 3186136 - 3184562 - | NAD(P) transhydrogenase subunit alpha TERM 2632 3186027 - 3186006 - G 70 -4.3 -4.56597 | opp_overlap 3186006 3186007, overlap 3186007 TCCGCGTCGGAAAAA CCGGCGC TATGGCCC GCGCCGC TTTCCACCACGCATG RD1_3320 3186711 - 3186262 - | hypothetical protein RD1_3321 3186971 - 3187729 + | oxidoreductase, putative RD1_3322 3187901 - 3187788 - | hypothetical protein TERM 2633 3187846 - 3187828 - GT 95 -10.3 -4.59853 | GCAAGTGCCGAAAAA GCTGCCT GACCG AGGCAGC CCAGACTTGGGTTCA RD1_3323 3188635 - 3187859 - | glutamine amidotransferase, putative RD1_3324 3188696 - 3188794 + | hypothetical protein glcB 3190994 - 3188847 - | malate synthase G TERM 2634 3190820 - 3190845 + g 76 -8.9 -4.07568 | opp_overlap 3190839 TCTTGGACTGAATGG CCGCGCGCTGT TCCA GCAATGCGCGG TTTTCCGGGCCAAAC RD1_3326 3191405 - 3191238 - | hypothetical protein TERM 2635 3193793 - 3193830 + G 80 -11.3 -3.70902 | gap 1, overlap 3193792 ACCCCAACCGCTTCC GCGC-CGTGATGGGCAGC CTT GCTGCGCATCATGCGGGC TTTCACTATGCCGAC pepN 3191509 - 3194058 + | aminopeptidase N, putative RD1_3328 3194062 - 3194802 + | short chain dehydrogenase/reductase family oxidoreductase TERM 2636 3194900 - 3194931 + G 79 -8.7 -4.14739 | gap 2 AGTATCACCGTCGAT GCCGCG-CC-CTGGC TGAT GCTGGCGGTCGCGGC TTTTACCCTGCCTGC RD1_3329 3194870 - 3195229 + | hypothetical protein RD1_3330 3195868 - 3195242 - | transglycosylase SLT domain-containing protein TERM 2637 3195591 - 3195631 + g 72 -2.3 -4.74453 | overlap 3195593 3195608 CCGATCCAGAAGGCT TCGCGTCCCGCTTCGTCGG CCT CCGGATAGGCCGGACACCA TTTTTCAATATCTTC TERM 2638 3197159 - 3197145 - g 70 -10 -3.53811 | opp_overlap 3197135 TGGATCGTGCGCAAA CACCTC AAA GAGGTG CACGCCATGGTTTGG TERM 2639 3197224 - 3197201 - g 76 -12.4 -3.29144 | opp_overlap 3197200 3197198 3197197 CCACGGGTTTGACAA CGCGATGCGC GTGC GCTCATCGCG CTGGTTTGCCGCCAA TERM 2640 3197251 - 3197272 + G 71 -7.1 -4.15044 | CCAAGGGGCGGCAGA CCGCCCTGC GCAC GCTGGCCGG TTTGTTCCGCCACGA RD1_3331 3196086 - 3197357 + | hypothetical protein RD1_3332 3197371 - 3197853 + | hypothetical protein TERM 2641 3197970 - 3197942 - f 81 -11.7 -3.54424 | GCCCACTGGCCTAAA CCCTCGGTCCA TGACGAC TGGCCCGAGGG AGACTGCCCATGCTC gatB 3197980 - 3199491 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 2642 3199577 - 3199552 - f 70 -6.7 -4.18401 | opp_overlap 3199564, overlap 3199553 GGACAGAGGGCAAAA GCGGGGCTGAC GCGC GCGAGCCGCGC AGGCCCAAGCGATTC TERM 2643 3199603 - 3199616 + F 71 -4.5 -4.67234 | overlap 3199597 3199614 GATTCTGTCCTGTTG CGCAG TGTC TTGCG TTTTTGCGCTTGGCT RD1_3334 3199757 - 3200560 + | hypothetical protein TERM 2644 3200584 - 3200604 + F 100 -15.4 -4.74132 | opp_overlap 3200582 3200579, overlap 3200585 CTTTTGGAAACGATG GGGCCGGC AAAGC GCCGGCCC TTTTTACTGGCCTAT RD1_3335 3200990 - 3201568 + | hypothetical protein RD1_3336 3201688 - 3202152 + | hypothetical protein bolA 3202419 - 3202162 - | BolA protein TERM 2645 3202406 - 3202418 + g 88 -3.3 -5.50499 | CTGTCTTCAATATCT TGCCG TTT CGACA TTTTTTTCCCTCTGC TERM 2646 3202589 - 3202555 - g 84 -3.4 -5.29445 | opp_overlap 3202582, overlap 3202556 3202559 GTCCAAGAAGAAAAA CCCACGCGGCAGAC GCGGCAT GTCCGGCGCCTCGG AAACGTCGAGACGTA dnaJ 3202496 - 3203122 + | chaperone protein DnaJ, putative cobS 3203245 - 3204231 + | aerobic cobaltochelatase CobS subunit cobT 3204283 - 3206160 + | aerobic cobaltochelatase CobT subunit RD1_3341 3206207 - 3207997 + | M24 family metallopeptidase RD1_3342 3208073 - 3208417 + | hypothetical protein RD1_3343 3210111 - 3208426 - | voltage-gated chloride channel protein, putative TERM 2647 3209971 - 3209956 - G 71 -6.1 -4.40561 | overlap 3209966 TTTGCGGAAAAACAA TGCCG CAAACC CGGCA GCCACGCCGACTCCC recN 3211906 - 3210179 - | DNA repair protein RecN TERM 2648 3211115 - 3211103 - GR 86 -10.5 -4.14243 | opp_overlap 3211103 CAGGGCATCCGAAAA GGCGG CCT CCGCC CCCTGATTGCCCAGA comL 3212729 - 3211863 - | competence lipoprotein ComL, putative lpxC 3213830 - 3212907 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 2649 3214010 - 3213991 - R 100 -9.2 -5.05079 | ATAATCATAGAAAAA GGGCCACC TTGC GGCAGCCC CTCAACGTCATTTCG ftsZ 3215566 - 3214034 - | cell division protein FtsZ TERM 2650 3215676 - 3215693 + r 100 -10.5 -5.14965 | overlap 3215677 ATCCGCCTGTGCTGC TGCCCGC ATTC GCGGGCG TTTTTTACTGCCAAT TERM 2651 3215677 - 3215692 + r 83 -11.8 -3.68256 | overlap 3215676 TCCGCCTGTGCTGCT GCCCGC ATTC GCGGGC GTTTTTTACTGCCAA TERM 2652 3215889 - 3215905 + r 74 -2.1 -5.0133 | overlap 3215869 3215868 3215891 CCGGCGCCGCGAGGG GCCGGGG CAA CTTCGTC TTTTTTGGCGGACTG ftsA 3217319 - 3215985 - | cell division protein FtsA TERM 2653 3216142 - 3216120 - G 71 -5.4 -4.28994 | overlap 3216121 CACCACCGAGGAAAA TGCAGGCCCC GTT GCGACCTGCG GCAGGCCATGCACCC ftsQ 3218132 - 3217323 - | cell division protein FtsQ, putative ddlB 3219190 - 3218192 - | D-alanine--D-alanine ligase murB 3220149 - 3219220 - | UDP-N-acetylenolpyruvoylglucosamine reductase RD1_3354 3220407 - 3220159 - | hypothetical protein murC 3221833 - 3220427 - | UDP-N-acetylmuramate--L-alanine ligase TERM 2654 3221446 - 3221466 + g 79 -9.7 -4.14739 | CATCCAGCAAGGTCG CCACCATGG TGG TCGTGGTGG TTTTGCCATGCGTGC TERM 2655 3221795 - 3221815 + g 79 -8.1 -4.43501 | opp_overlap 3221794, overlap 3221797 3221812 GCCGACGAAATGTAT CGGCCCGAC ATC GCCGGGCAG TTTTGTCGCTGCATT murG 3222915 - 3221830 - | N-acetylglucosaminyl transferase TERM 2656 3222610 - 3222595 - G 74 -3.2 -4.72986 | gap 1, opp_overlap 3222596, overlap 3222596 3222597 CAGCTTCATCAAAAA GGCCGCC GCC AGCG-CC GGGATTGTCGGGTAT TERM 2657 3222943 - 3222918 - R 93 -8.9 -4.72497 | gap 1 CAGCGATCAACAAAA GCGG-CGCGCTC ATC GGGCGCGTCCAC GCGACAACAGATCGC ftsW 3224096 - 3222927 - | cell division protein FtsW, putative TERM 2658 3225044 - 3225027 - g 91 -4.8 -5.45802 | gap 1 GCCCTAAAAGAAAAA CGCAGCC AGTCG GGC-GCG CGCAAACTGACAAAC TERM 2659 3225173 - 3225153 - g 100 -13.9 -4.18494 | CAGTCCGACGCAAAA CTCGCCGGC ATC GCCGGCGCG CTGGAGAAATGGACC RD1_3359 3224229 - 3225401 + | hypothetical protein RD1_3360 3225451 - 3225353 - | hypothetical protein murD 3226909 - 3225515 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase mraY 3228044 - 3226962 - | phospho-N-acetylmuramoyl-pentapeptide transferase TERM 2660 3227766 - 3227741 - G 84 -10.5 -4.26344 | overlap 3227757 ACATGGTCACGAAAA GGACAATCCAC ACAA ACGGATTGTCC AGCCGCGCCCAGAGC murF 3229484 - 3228054 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 2661 3228590 - 3228627 + g 78 -13.5 -3.14564 | gap 1, opp_overlap 3228573 CCAGCGCCACATCCG TGCGCAGGGCGGCCAT CACCGCA ATGGCC-CCCAGCGCA TTCATCGCGAAATGC murE 3230962 - 3229481 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 2662 3229700 - 3229690 - G 75 -8.2 -4.2828 | opp_overlap 3229689, overlap 3229691 GCGCACCGAGCAAAA CCGC CGC GCGG ATGCTTGCCGGATCC TERM 2663 3230968 - 3230979 + r 71 -7.2 -3.97042 | GCCCGAGCATCGCAC CCGC CTTT GCGG TTTAATTACTGGTCA RD1_3366 3232612 - 3230981 - | penicillin-binding protein, putative TERM 2664 3231229 - 3231241 + g 78 -10.5 -3.91144 | opp_overlap 3231224, overlap 3231230 CTTCGTAATATCCGC CCCGG CTG CCGGG TTTGTCCGCTGTGCC TERM 2665 3232630 - 3232618 - R 71 -6.2 -4.30576 | overlap 3232620 GCCCCAGCACCAAAA GCCG CCCCT CGGC CCGCTGGCGCGCCTG TERM 2666 3232645 - 3232676 + r 70 -6.6 -4.11692 | gap 1, overlap 3232636 3232647 CCCGCTGGCGCGCCT GATCGCGCATCTGCT CGT GGCGGATGCG-GATG TTTTCCCGCTCGATC TERM 2667 3232647 - 3232674 + r 70 -9.2 -3.65542 | gap 1, overlap 3232636 3232645 CGCTGGCGCGCCTGA TCGCGCATCTGCT CGT GGCGGATGCG-GA TGTTTTCCCGCTCGA RD1_3367 3233118 - 3232759 - | hypothetical protein mraW 3234110 - 3233118 - | S-adenosyl-methyltransferase, putative TERM 2668 3233298 - 3233284 - G 71 -8.5 -4.14243 | GAGCGCAGCGTAAAA GCGGG CGCAT CCCGC TGCACTTCGGGTGCG RD1_3370 3234647 - 3234114 - | cell division protein MraZ TERM 2669 3234748 - 3234713 - R 100 -19.8 -3.84451 | overlap 3234743 GTCTTGAAATGGAAA CGGCGGGTTGATCTGC TGCC ACTGATCAACCCGCCG CCCTCGTCCCGCTGA RD1_3371 3236372 - 3235299 - | Mrp/NBP35 family protein, putative TERM 2670 3236167 - 3236184 + g 71 -5.5 -4.37886 | overlap 3236147 GCCGATTGCACGCCG GGCAGTT CGCG AACCGCC TTTTCTGCCGCATCG TERM 2671 3236432 - 3236418 - H 70 -3.4 -4.7219 | TATAGCAACAGAAAA CCGAAG TAC CACCGG CAGCATCCAATTGCC RD1_3372 3236591 - 3236827 + | hypothetical protein TERM 2672 3236826 - 3236811 - T 84 -9 -4.2528 | opp_overlap 3236825 CGGCAATTGAACAAA CAGCTC GCGT GAGCTG ACTGACGTTCGGGCA TERM 2673 3236873 - 3236905 + T 81 -12.1 -3.53012 | ACGCCCGCATGTTGG CGGCGGCATCT ATCCTCCTCCC AGATGCCGCCG TTTACAAACAAGACC TERM 2674 3237038 - 3237002 - T 81 -13 -3.15544 | opp_overlap 3237001 3236999 3237002 GTTGATCTGTACCAA GGCGGTGGCGCCTA TCCTCCTCC CAGGCGCCACCGTC CCTATTTCAGGAAAA TERM 2675 3237002 - 3237039 + T 72 -12.1 -2.60496 | gap 1, opp_overlap 3237002, overlap 3237001 3236999 GTTGATCTGTACCAA GG-CGGTGGCGCCT ATCCTCCTCCC AGGCGCCACCGTCC CTATTTCAGGAAAAC RD1_3373 3237792 - 3237115 - | hypothetical protein RD1_3374 3240338 - 3237906 - | DNA helicase II, putative TERM 2676 3238682 - 3238704 + g 81 -7.6 -4.67038 | CCTTGAGGTTTTCCA GACGCCCCGG CGC CTCGGGTGTC TTTTCGTTTTGCCAA TERM 2677 3240049 - 3240060 + g 77 -3.6 -4.98531 | GGCTGGCCCAACATT TCGC CGAC GCGG TTTTTCATTTCGCGC TERM 2678 3240721 - 3240763 + G 74 -12.7 -3.13177 | gap 1, overlap 3240723 TGTGGCCCGATGCCG AAGGGCATCTG-GCCCGCGC AGCG GCGCGCGCACAGATCCCCTA TTCGCTGTCAACTGT TERM 2679 3240723 - 3240761 + G 80 -15.3 -3.12505 | gap 1, overlap 3240721 TGGCCCGATGCCGAA GGGCATCTG-GCCCGCGC AGCG GCGCGCGCACAGATCCCC TATTCGCTGTCAACT lldD 3240444 - 3241601 + | L-lactate dehydrogenase, putative TERM 2680 3244510 - 3244520 + G 71 -8.2 -4.07687 | GGCAACCTCGGCCAA CCGC CCG GCGG TTTTCCCGAGGCCAT TERM 2681 3244579 - 3244545 - g 73 -4.3 -4.59773 | gap 1, overlap 3244565 GGCCATTGTGAAAAA GGTGCTCAAGGAT-GA ACAA CCGATCCTTGACCGCC CCGGCAAACACCTGC pyc 3241747 - 3245187 + | pyruvate carboxylase TERM 2682 3245456 - 3245438 - g 72 -12.4 -2.98778 | overlap 3245435 CTACAACTCAAATCA CGCCTGCC TCA GGCAGACG TAGGGGATATCGTCT RD1_3377 3245354 - 3246187 + | hypothetical protein TERM 2683 3246412 - 3246377 - f 93 -13.5 -3.82097 | TCCAAATTTACCAAA GCCTTACAGTTGTTT AGCTTA AAACATCTGTAAGGC TGGTCAATCTCAAAT TERM 2684 3247037 - 3247091 + F 76 -12.8 -2.81547 | gap 1, opp_overlap 3247022, overlap 3247079 GCTGAACGGCGGGAC GCC-GCGCTCCGGGCGATGCGGGAT CATGAA ATCTCGCAGCGTCGGGCGTGCAGGC TCGTTGGTGTCGACC TERM 2685 3247810 - 3247797 - g 73 -4.5 -4.63218 | overlap 3247808 CGCTCGGGAACAAAA CGCCT ACAG AAGCG CGCCGGACGCTTGAG TERM 2686 3247853 - 3247808 - g 70 -10.4 -3.51563 | gap 1, overlap 3247797 AAAACGCCTACAGAA GCGCGCCGGACGCTTGAGC AATTTGAGG GCTCC-GCACCCGACGCGC TTGCCCATACGGACA RD1_3380 3247052 - 3247909 + | integrase catalytic subunit RD1_3381 3248407 - 3247982 - | transposase, putative TERM 2687 3248618 - 3248635 + r 74 -9.9 -3.737 | opp_overlap 3248617 GAGCGTCTGACGAAT TGCCTGA AATA TCAGGCA TTTCGTAACGCATTG RD1_3382 3250681 - 3248702 - | hypothetical protein TERM 2688 3249187 - 3249211 + g 100 -8.5 -5.29445 | opp_overlap 3249187 3249186 TTTGCGCCGTCAAAC GCGCGGCTTCA GCC TCAAGACGCGC TTTTTCTTCTTGCAA TERM 2689 3250065 - 3250076 + g 81 -5.8 -4.78848 | TCAAGAATTTCTCCC TGCG CCTG CGCA TTTTGTCTTTCAAGA TERM 2690 3250362 - 3250406 + g 79 -15 -2.92613 | gap 1, overlap 3250359 GACAGGGCCTCAGCC TGCGCA-TCACGCGTCGCCGT CAGC GCGGCGATGCGGGCCTGCGCA TCATTTAACGTCGCA RD1_3383 3251865 - 3250681 - | MotA/TolQ/ExbB proton channel family protein TERM 2691 3250968 - 3250978 + g 71 -6.8 -4.18018 | CAGACCCTTCCATCC GCTG GGT CAGC TTTTCGATGGAGGCC TERM 2692 3251447 - 3251436 - G 70 -4.4 -4.43911 | overlap 3251444 AAAGCCCAAGGAAAA TCAG CATA CTGA CGATGTAGCGCGTGA chaC 3252471 - 3251941 - | cation transport protein RD1_3385 3252486 - 3253541 + | hypothetical protein RD1_3386 3254317 - 3253538 - | hypothetical protein tyrC 3255234 - 3254314 - | cyclohexadienyl dehydrogenase TERM 2693 3254838 - 3254828 - G 71 -8.2 -4.12599 | overlap 3254829 AACAATTCGGCAAAA CCGG ATT CCGG ACCAGAGTGTTCGGT hisC 3256310 - 3255231 - | histidinol-phosphate aminotransferase TERM 2694 3256083 - 3256067 - G 77 -10.9 -3.63805 | ATCCGACACCGCAAA TGATGCG CCC CGCATCA AGTCCATGCACCTGC TERM 2695 3256173 - 3256203 + g 74 -5.4 -4.55798 | gap 1, overlap 3256175 3256176 TGTTTCAGCGACTTT CGCA-CTGGCTGC CGGACT GCAGCCGGATGGG TTTTCGTTTGAGCTG RD1_3389 3256451 - 3256564 + | hypothetical protein TERM 2696 3257149 - 3257160 + G 83 -2.2 -5.24129 | gap 1 ATGCTCGACACCGCG C-CGG AAA CCGTG TTTTTTCTCGCCCCG RD1_3390 3256597 - 3258564 + | acyltransferase, putative TERM 2697 3258573 - 3258609 + T 87 -13.6 -3.21912 | opp_overlap 3258574, overlap 3258574 3258576 3258579 GATGTGAGCGCAAAA AGAATGGCCGCGCCGG GTTTG CCAGCGCGGCCACTCG TTGATCGCTTCGAAA TERM 2698 3258574 - 3258608 + T 90 -17.1 -2.52933 | opp_overlap 3258574, overlap 3258573 3258576 3258579 ATGTGAGCGCAAAAA GAATGGCCGCGCCGG GTTTG CCAGCGCGGCCACTC GTTGATCGCTTCGAA TERM 2699 3258608 - 3258574 - T 100 -21.5 -4.62336 | opp_overlap 3258574 3258573 3258576 3258579 ATGTGAGCGCAAAAA GAATGGCCGCGCCGG GTTTG CCAGCGCGGCCACTC GTTGATCGCTTCGAA TERM 2700 3258576 - 3258606 + T 79 -13.9 -2.8007 | opp_overlap 3258574, overlap 3258574 3258573 3258579 GTGAGCGCAAAAAGA ATGGCCGCGCCGG GTTTG CCAGCGCGGCCAC TCGTTGATCGCTTCG rpsD 3259249 - 3258629 - | 30S ribosomal protein S4 tag 3259954 - 3259382 - | DNA-3-methyladenine glycosylase I RD1_3393 3260054 - 3260926 + | EAL domain-containing protein TERM 2701 3261105 - 3261085 - g 83 -2.5 -5.243 | overlap 3261088 CAAAGGACCAAAAAA CCATGACGA ACG TCGTAATCG CCTCCGCCGCAAGAA TERM 2702 3261904 - 3261882 - g 85 -9 -4.60487 | GATGAGGCCGAAAAA CGCGGCATCG AAC CGCTGGCGCG CATTGCAAGCTATGC phbA 3261042 - 3262262 + | acetyl-CoA acetyltransferase TERM 2703 3262293 - 3262274 - f 100 -16.4 -3.14522 | overlap 3262263 CTAACCCAGACCGAA GCGGCGCC CTGG GGCGCCGC ATGATACACCACCGT phbB 3262374 - 3263096 + | acetoacetyl-CoA reductase, putative TERM 2704 3263144 - 3263121 - T 100 -18.2 -3.66178 | opp_overlap 3263121 TCTTGGAAGTTCAAA GGGCCGGTTC ATGC GAACCGGCCC TTTTTGATCCCGTAA TERM 2705 3263121 - 3263144 + T 100 -18.2 -4.7373 | opp_overlap 3263121 TCTTGGAAGTTCAAA GGGCCGGTTC ATGC GAACCGGCCC TTTTTGATCCCGTAA RD1_3396 3263294 - 3263175 - | hypothetical protein RD1_3397 3263415 - 3264347 + | DNA-binding transcriptional activator GcvA RD1_3398 3264567 - 3264403 - | hypothetical protein TERM 2706 3264429 - 3264441 + g 88 -4.1 -5.47159 | GTCGGGTGATTTCTT CTTTG AGG CGAAG TTTTTGTTTCTTGAG TERM 2707 3264502 - 3264528 + g 75 -2.9 -4.87389 | overlap 3264504 TGCACGCTGGGCTGC TTCGACAGCCT CGCTC AGGCTCTCGTG TTTCTTTTTCAGCTG TERM 2708 3264504 - 3264526 + g 71 -7.7 -4.04587 | overlap 3264502 CACGCTGGGCTGCTT CGACAGCCT CGCTC AGGCTCTCG TGTTTCTTTTTCAGC RD1_3399 3265419 - 3264679 - | hypothetical protein RD1_3400 3265631 - 3265416 - | hypothetical protein TERM 2709 3265721 - 3265705 - g 70 -4.3 -4.4874 | overlap 3265714 GTCAAAAACCGAAAA CGCGCAG AAG CCACACG ACCGTATGGCGGCCT TERM 2710 3266216 - 3266233 + G 71 -6.9 -4.17048 | TATCTACAGGTCGTG CGCGGCA AGAC TGCGGCG TTGTTTTCGGCCGCG TERM 2711 3266402 - 3266392 - g 76 -5.4 -4.62471 | opp_overlap 3266392, overlap 3266394 TGCAATCGGCAAAAA CATC GGG GATG ATTTCCGCGAACGCA ispB 3265688 - 3266689 + | octaprenyl-diphosphate synthase ispE 3267581 - 3266682 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, putative RD1_3403 3269297 - 3267588 - | TPR domain-containing protein TERM 2712 3269132 - 3269149 + g 73 -14.1 -2.78384 | opp_overlap 3269120 AAAGGTTCGCGGGAT CGCGCGC CAGT GCGCGCG TGTAATAGGACGCGG RD1_3404 3271092 - 3269443 - | electron transfer flavoprotein-ubiquinone oxidoreductase, putative TERM 2713 3271585 - 3271616 + G 90 -15.1 -3.46647 | gap 1, overlap 3271583 GGGTGCAATTGTCAC CAGCGGCCC-CCGG ACTCC CCGGCGGGCCGCCG TATTTCGTGGATACC greA 3271168 - 3272106 + | transcription elongation factor GreA TERM 2714 3273017 - 3273031 + G 83 -4.2 -5.04987 | overlap 3273013 3273018 3273021 GGACCCGATTTTCCG CGATGC CGC GCATCA TTTTTTGCGGCTGTT RD1_3406 3272121 - 3273167 + | hypothetical protein TERM 2715 3273252 - 3273210 - T 74 -10.1 -3.72231 | gap 2 TGACACATCGAATAA CACGTAACGC-GC-TGAATTC TTT GATTTCAGGCAGCATTACGTG ATCGCGGTTTTTCGC moeA 3275345 - 3273276 - | molybdopterin biosynthesis protein, putative TERM 2716 3273452 - 3273464 + g 73 -4.7 -4.58786 | opp_overlap 3273451 GCGCGCGCAGAAACT CCGAG CGG CCCGG TTTCTTGTTCTTGCT TERM 2717 3273932 - 3273976 + g 74 -12 -3.53444 | opp_overlap 3273944 CGACCAGTTCCGCCC CGGTTGAGACGACCGCGACG CGCAA CGGCGCGTAAGTCTCGACCG TTTGCACCCCGGTCG TERM 2718 3274511 - 3274532 + g 74 -11.5 -3.53224 | opp_overlap 3274497, overlap 3274497 3274513 AGCTGTTGCTGAGGC GCGGCGGCA GCTT TGCCGCCTC TTTCAGCAGCGCCTC TERM 2719 3274513 - 3274530 + g 76 -12.7 -3.34398 | opp_overlap 3274497, overlap 3274497 3274511 CTGTTGCTGAGGCGC GGCGGCA GCTT TGCCGCC TCTTTCAGCAGCGCC mobB 3275836 - 3275342 - | molybdopterin-guanine dinucleotide biosynthesis protein B mobA 3276441 - 3275833 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 2720 3276149 - 3276133 - G 88 -6.5 -5.00884 | overlap 3276135 ATCGCCCGGAAAAAA CGGCG TGTCAGC CGCCG CTGTCACAATCATAT fdhD 3277325 - 3276438 - | formate dehydrogenase accessory protein FdhD, putative TERM 2721 3276960 - 3276979 + g 73 -4.2 -4.6635 | gap 1, opp_overlap 3276948, overlap 3276959 3276973 AAACACCGTGCCCAC CGCGCAGCC ACT GG-TGCGGG TTTTCTTGCGCATTT TERM 2722 3277435 - 3277447 + G 100 -9.1 -4.73614 | overlap 3277415 CTGGCGCGGGTTCCG CGGTG GCA CACCG TTTGTTTTCGTGGTC RD1_3411 3277376 - 3278107 + | AzlC family protein RD1_3412 3278104 - 3278430 + | hypothetical protein RD1_3413 3278940 - 3278437 - | putative lipoprotein RD1_3414 3279185 - 3279051 - | hypothetical protein RD1_3415 3279803 - 3279342 - | hypothetical protein RD1_3416 3280853 - 3279807 - | metallo-beta-lactamase family protein RD1_3417 3282547 - 3280853 - | putative acyl-CoA dehydrogenase family protein TERM 2723 3281429 - 3281458 + g 72 -12.1 -3.08798 | gap 1, opp_overlap 3281429 GATGGGCGTCAGCAA GGCGGCGCGCGCCT GCC AGTCG-GCGCTGCC TGTTGCATGCGCCAT TERM 2724 3283461 - 3283487 + G 70 -4.2 -4.57569 | ACCTGTCCCGCGACG GGGATCTGACCG AAG CGGCCAGCGCTC TTTTTGAGAGCCTGC RD1_3418 3282668 - 3283612 + | Sua5/YciO/YrdC family protein RD1_3419 3284176 - 3283622 - | hypothetical protein TERM 2725 3284128 - 3284110 - G 75 -13.2 -2.92144 | overlap 3284107 3284124 CGCAAATGAGAATGA CCGCGTTT TGA AAACGCGG ATCGCCCATCGAAGG RD1_3420 3284326 - 3285132 + | hypothetical protein RD1_3421 3288518 - 3285129 - | putative acriflavine resistance protein TERM 2726 3286964 - 3286988 + g 89 -11.5 -4.2528 | opp_overlap 3286964 TGAAGGGGCGGAACA GGGTTTCGC GGATGTG GCGAAACCC TTTATTGACTTGCCG TERM 2727 3287220 - 3287178 - G 78 -6.9 -4.60487 | gap 1, opp_overlap 3287218, overlap 3287210 CATCAGGCCGAAAAA GGCGATGACGGTCGTGAGCG TGGC CGC-CAATACGGGCATCGCC ATGCGGCGCGCGGCA TERM 2728 3287449 - 3287439 - G 75 -8.2 -4.18018 | TGCCGCGACCCAAAA CGCG GTG CGCG CATTCAGAAAGAGAA RD1_3422 3289979 - 3288522 - | RND family efflux transporter MFP subunit TERM 2729 3288986 - 3288964 - G 82 -11.2 -3.9377 | overlap 3288965 3288978 3288979 AGAACGGTAACGAAA TCCCCCGGAC GAA ATCCGGGGGC CGCCCCCAGCCGGGC TERM 2730 3288985 - 3288965 - G 79 -14.7 -2.95539 | overlap 3288964 3288978 3288979 GAACGGTAACGAAAT CCCCCGGAC GAA ATCCGGGGG CCGCCCCCAGCCGGG TERM 2731 3289508 - 3289538 + g 76 -10.3 -3.75024 | GCGCAAGCGCCTGTT CGCGCAGCACCGC TTGTT GTTGTGCGGCGCG TTCTTCCTGCTGGGC moaB 3290616 - 3290074 - | molybdenum cofactor biosynthesis protein B TERM 2732 3290237 - 3290249 + g 73 -9.1 -3.86346 | CCCAAAGCCACCCCT GCCGT AGC ACGGC TTTGTACCGCGCTGG TERM 2733 3290578 - 3290568 - G 71 -8.2 -4.13014 | overlap 3290546 3290569 CCGACACCGTCAAAA CCGC GAT GCGG ATGGCGATGAAGTCC RD1_3424 3291229 - 3290618 - | LysE family protein udgA 3292001 - 3291222 - | uracil-DNA glycosylase, C-terminal TERM 2734 3291810 - 3291822 + g 76 -9.1 -4.08064 | TTTACGCGCGGCATC GACCG GAT CGGTC TTTTCCGCAGCCCTT pyrB 3292065 - 3293063 + | aspartate carbamoyltransferase catalytic subunit RD1_3428 3293060 - 3293626 + | hypothetical protein pyr 3293626 - 3294906 + | dihydroorotase, multifunctional complex type RD1_3430 3294912 - 3295514 + | hypothetical protein ectC 3296175 - 3295789 - | L-ectoine synthase TERM 2735 3296123 - 3296100 - G 71 -7.4 -4.27617 | gap 1 CAGATTTCACCAAAA GCCGCAGGCTG CTC CAGCCCG-GAC CCGCCGCATCGCGCG TERM 2736 3296458 - 3296432 - g 78 -6.5 -4.62069 | opp_overlap 3296439 GGTGCATCGGAAAAA CTGCTGGGCGA GATGA TCGCCGATCAG CGCGATGATCTGATC RD1_3432 3296252 - 3297193 + | oxidoreductase, putative TERM 2737 3297277 - 3297261 - g 83 -2.1 -5.19212 | overlap 3297263 ACCATGATGAAAAAA CTGCCCG CCA CTGCCAG TGTCGCGACGCCCGC RD1_3433 3297249 - 3297896 + | hypothetical protein RD1_3434 3300394 - 3297893 - | dimethylglycine dehydrogenase, putative TERM 2738 3299523 - 3299534 + g 74 -7.2 -4.30576 | ACGCCATATTCGAAC CGCG CAGG CGCG TTTTGCTCGTACACG RD1_3435 3301904 - 3300510 - | oxidoreductase, putative TERM 2739 3300704 - 3300694 - G 81 -8.2 -4.59027 | opp_overlap 3300694, overlap 3300695 AACCACGACACAAAA CGCG CGG CGCG TTCGATTTCATCCGG TERM 2740 3301027 - 3301010 - G 74 -5.5 -4.57837 | ACAGGGCCGCAAAAA TCTCCGA TTGT TCGGCGA CGCTCGCCTCAGTGC ggt 3303713 - 3301935 - | gamma-glutamyltranspeptidase TERM 2741 3303320 - 3303305 - G 70 -3.2 -4.59773 | opp_overlap 3303314 3303315 CTTCATCCTGAAAAA GCCG TGGCGTGG CGGC CAGTGGCGCCGTTTC gyaR 3304729 - 3303743 - | glyoxylate reductase TERM 2742 3303969 - 3303980 + g 71 -7.2 -4.2828 | TCACTTCGCAGCATC CGCG TCAG CGCG TTTTCGTCGATGACC TERM 2743 3304747 - 3304759 + H 93 -4.8 -5.67967 | overlap 3304742 TGATCTCCACGGACT TGGC GCAGG GCCA TTTTTTTGTCATGGT RD1_3438 3304825 - 3305361 + | hypothetical protein TERM 2744 3305958 - 3305984 + G 75 -7.9 -4.25104 | gap 1, overlap 3305955 CCCATACCGTGTTTG GCGGC-GGCAGC ATTC GCGGCCAGTCGC TTTTGATCCACGGCG RD1_3439 3305534 - 3306526 + | oxidoreductase, putative RD1_3441 3307465 - 3306866 - | hypothetical protein RD1_3442 3308197 - 3307637 - | hypothetical protein TERM 2745 3308673 - 3308653 - R 85 -12.5 -3.53761 | opp_overlap 3308665 GAAGCCCCGTTCAAA GCCCGCCGC GCC GCAGCAGGC AAGCCTCCCCGCGGC RD1_3443 3309126 - 3308809 - | hypothetical protein TERM 2746 3310014 - 3310025 + G 75 -2.2 -4.89477 | ACTGCAGCACGCAAA GGTC CGGC GATC TTTTGTTATTCGAAC TERM 2747 3310436 - 3310408 - g 100 -8.7 -5.04356 | overlap 3310409 3310410 GGAAAGAACCAAAAA CCGGGCGGCGCAG ATA CCGCGCCACCAAA GCCGTTTGCGATGCC TERM 2748 3310435 - 3310409 - g 73 -10 -3.60987 | overlap 3310408 3310410 GAAAGAACCAAAAAC CGGGCGGCGCAG ATA CCGCGCCACCAA AGCCGTTTGCGATGC tnpA 3309369 - 3310757 + | transposase, putative TERM 2749 3311277 - 3311301 + F 70 -10 -3.32963 | opp_overlap 3311300 CTGTCCTATATTCAC GGTGTTGGCG AACTC CGCCAACAGC TTGTCGGGTCCGACT RD1_3445 3311518 - 3311712 + | hypothetical protein RD1_3446 3311712 - 3312782 + | DNA-binding protein, putative RD1_3447 3314736 - 3313087 - | UvrD/REP helicase, putative RD1_3448 3315824 - 3314733 - | hypothetical protein TERM 2750 3314928 - 3314939 + g 84 -5.8 -5.00616 | TGTATATTGCCCTGC CACG GTAT CGTG TTTTTTGCCGAGGAC RD1_3449 3316814 - 3316002 - | integrase catalytic subunit RD1_3450 3317116 - 3316850 - | hypothetical protein TERM 2751 3317460 - 3317496 + r 81 -8.2 -4.31412 | opp_overlap 3317460, overlap 3317478 AGCTTGTCCTAAGCA GC-CGGCTTTGTTCAACG CGA CGTTGAA-GAAGCTGAGC TTTTACTAGGTCTTT TERM 2752 3318121 - 3318144 + r 74 -7.5 -4.14392 | gap 1, opp_overlap 3318121 3318119, overlap 3318123 GCTCAAAAACCAACA TCTCTGTGCG ACAAA CGCACAG-GA TTTTACGCCTTACGC TERM 2753 3318498 - 3318525 + r 72 -4 -4.70169 | ATTTTGGGTGAGTTT GGGAGCCTTCTG TTTG CAGAGGTTGCCC TTTTGTTCGATCTGA RD1_3451 3319478 - 3318714 - | hypothetical protein RD1_3452 3319831 - 3320646 + | transposase, putative TERM 2754 3323203 - 3323178 - f 83 -6.2 -4.93877 | gap 1, overlap 3323181 3323200 CGCCAGCAAAGAAAA CATCT-TGGCG CGACC CGCCAAAGACG ATCCCATTCAGGATA TERM 2755 3326583 - 3326556 - f 81 -7.1 -4.77173 | gap 1, opp_overlap 3326555 GCGTCAGAAAACAAA CCACGTGCTTTG TCGGG CAAAGCA-GCGG CTTCAGTTTTCACGG TERM 2756 3327278 - 3327292 + F 84 -2.8 -5.33405 | overlap 3327274 CCGCTCATTTTCCGC TTTGCG CTT CTCAAA TTTTTCTTTGATCAG RD1_3456 3327714 - 3328010 + | hypothetical protein TERM 2757 3328358 - 3328373 + G 80 -3.2 -5.05601 | gap 1, overlap 3328355 CGACATCACGTATCT GCCCATG CGG CG-GGGC TTTTTGTATCTGGTC RD1_3457 3328308 - 3328784 + | transposase, putative RD1_3458 3328943 - 3329038 + | hypothetical protein TERM 2758 3329099 - 3329055 - T 100 -20.1 -3.19026 | CAGCGCAAGACGTAA CACGCAGCGGACCTTGAAAGC GTA GCTTTCAGGGCTCGCTACGTG ACTAGAAGGTTTCAG RD1_3460 3331003 - 3329975 - | calcium binding hemolysin protein, putative TERM 2759 3330826 - 3330809 - G 71 -6.9 -4.20368 | CGAGCCGAAGATAAA GGTGTCG CGCC CGGCACC GCCCACCATCTCGTC TERM 2760 3331027 - 3331040 + r 70 -9.5 -3.40597 | overlap 3331024 TCCCCTGAGCGTTGC GCCGC GATT GCGGC TATTTCGATGAGGAC RD1_3461 3332438 - 3331101 - | two-component hybrid sensor and regulator, putative RD1_3462 3333112 - 3332435 - | two-component response regulator, putative TERM 2761 3333242 - 3333206 - H 74 -11.4 -3.28924 | gap 1, overlap 3333182 3333207 GAGCGTGGCGGACAA CCGCCGCGCCCGC-CGC TTGG GCGTGAGGGCGCCGCGC CGCAGGTGTGACGAA TERM 2762 3333241 - 3333207 - H 83 -14.9 -2.57211 | gap 1, overlap 3333182 3333206 AGCGTGGCGGACAAC CGCCGCGCCCGC-CGC TTGG GCGTGAGGGCGCCGCG CCGCAGGTGTGACGA TERM 2763 3333295 - 3333279 - H 74 -6.5 -4.33621 | overlap 3333282 CAGCTAAGCAAGAAA GATGCGT GAA ACGCCTC AATCGTTGCAGTAAC TERM 2764 3333498 - 3333481 - H 77 -4.1 -5.00616 | TGTGGGCTCAAAAAA CCGATCC CCTG AGATCAG GACGGCCCATACCGG TERM 2765 3334147 - 3334132 - H 95 -10.4 -4.63184 | overlap 3334142 AATGTAGTGGAAAAA TCCGGC CAAA GCCGGA TCGGGAGAACGGTTT RD1_3464 3334460 - 3335293 + | putative lipoprotein TERM 2766 3335466 - 3335442 - g 85 -5.6 -5.06414 | gap 1, overlap 3335443 GCTGCTCAATAAAAA CGCCGACGCGC CCTT GC-CGCCGGCC TCCATGTCCAAACTG TERM 2767 3336005 - 3335984 - g 71 -8.6 -4.08767 | opp_overlap 3336000, overlap 3336000 CGGACGGGTTGAAAA CCGGCCAC ACGCAA GAGGCCGG ATACGGTCTTGTCGG dacC 3335314 - 3336483 + | D-alanyl-D-alanine carboxypeptidase TERM 2768 3336493 - 3336506 + G 78 -5.2 -4.75404 | overlap 3336481 TCGTGATATCGCGCA CCCG CGACAC CGGG TTTTTCATCACCTTT TERM 2769 3336679 - 3336699 + G 72 -2.3 -4.86731 | overlap 3336683 GTGATCCCGACCGCT GGTCCGCCG AGA CGGAGATCC TTTTGTTTACAGCCG tmk 3336480 - 3337118 + | thymidylate kinase TERM 2770 3337164 - 3337139 - g 76 -12.5 -3.30701 | opp_overlap 3337150, overlap 3337134 CCCGATCAAATTGAA GGCGCGCCGCA CCCG CGCGACACGCC GCAGGTTTTTGGTCA TERM 2771 3337150 - 3337169 + G 76 -5.6 -4.72272 | gap 1, opp_overlap 3337139 3337134 TGAAGGCGCGCCGCA CCCGC-GCG ACA CGCCGCAGG TTTTTGGTCAAGCCA TERM 2772 3337486 - 3337510 + G 83 -4.9 -5.08169 | overlap 3337480 TGACGTGATCGCCGT CGATGACATCC GCG GCCTGTCGTCG TTTTTTCAACTCTCT TERM 2773 3338032 - 3338062 + G 74 -12.4 -3.16191 | GGGCCTGCCCCCTAC GGTCGAGGCCACGC CCG GCGAGGCGGCGACC TTGATGCGCCTGTCG RD1_3467 3337115 - 3338221 + | DNA polymerase III subunit delta' RD1_3468 3338255 - 3339061 + | hypothetical protein RD1_3469 3339061 - 3339861 + | hypothetical protein RD1_3470 3339922 - 3340857 + | auxin efflux carrier family protein RD1_3471 3341607 - 3340810 - | Asp/Glu/Hydantoin racemase family protein, putative TERM 2774 3340904 - 3340878 - G 70 -4.4 -4.57569 | gap 1 GCATCTGCGCAAAAA GCTGCCCCG GTGCATGTGG CGGGGC-GC GCAGGCCGGCAAGGC pepQ 3342470 - 3341604 - | proline dipeptidase, putative RD1_3473 3343807 - 3342758 - | hypothetical protein TERM 2775 3344644 - 3344656 + G 73 -4.7 -4.59773 | CCGCCCCCTGCGCAC CGGGG AGG CCACG TTTTTCGAAATCGCC TERM 2776 3344885 - 3344867 - g 70 -5.2 -4.57073 | overlap 3344869 3344871 TACGGGTTTCAAAAA GACAGCCG CTG CGGCTATG CGATCGGCTTGTCCT RD1_3474 3343925 - 3345100 + | peptidase, M24 family protein, putative RD1_3475 3345105 - 3346100 + | hypothetical protein gph 3346754 - 3346104 - | phosphoglycolate phosphatase RD1_3477 3347225 - 3346866 - | hypothetical protein TERM 2777 3346937 - 3346960 + g 76 -6 -4.71791 | gap 1, overlap 3346940 GGTCATCAAGGCGCT CTG-TCGCATC CTT GATGCGATCCG TTTCTTTCTTGATCT RD1_3478 3348169 - 3347243 - | hypothetical protein TERM 2778 3347441 - 3347431 - G 72 -2.4 -4.7373 | CCACCTCATCAAAAA GCCG GTC CTGC AAGCGCTGCACATCG TERM 2779 3348418 - 3348401 - R 71 -9.8 -3.53811 | TTTATCGTTCTGAAA GGCCCG CAGCTT CGGGCC CCACCCACCAGCGCT RD1_3479 3349552 - 3348506 - | putative hemin ABC transport protein, permease component TERM 2780 3349365 - 3349307 - G 74 -11.4 -3.46647 | overlap 3349328 3349345 GGCACCCACGAAACA GGCCAGCAGGGCGCGTGGAAAGCGGATG TCC CAGACAATCGCCTCGCGCCCAGCCGACC AATCGCCCTCGAAGG TERM 2781 3349511 - 3349480 - G 78 -5 -4.75472 | GCGACACCAACAAAA CTGCCCAGCCGC AGATCATG GCGACAGGGTAG ACCGCAGACTGCCGG RD1_3480 3350499 - 3349558 - | putative iron ABC transporter, periplasmic binding protein TERM 2782 3349924 - 3349914 - G 78 -2.4 -5.03994 | TGTCATAGACAAAAA CACG CGG CGGG GTGCTGAGCGGCGAC RD1_3481 3351294 - 3350512 - | iron ABC transporter, ATP-binding protein, putative TERM 2783 3350626 - 3350650 + g 84 -11.3 -4.07568 | opp_overlap 3350616 3350613 AAGCACCGCATCAGG CGGCCCCACGC CAC GCGTGTGTCCG TTTTCGAGCAGCAGA RD1_3482 3351734 - 3351291 - | hypothetical protein TERM 2784 3351687 - 3351733 + g 70 -10.1 -3.53855 | gap 1, overlap 3351685 3351683 TATTCTATGTGTCGG TGTTCC-CATGTCGCCCTCCGC GATT GCGCAGGGTGCCTTGTGGGACA TGTATTTTTCGACGG RD1_3483 3352157 - 3352585 + | hypothetical protein TERM 2785 3352733 - 3352751 + G 78 -4.5 -4.86731 | opp_overlap 3352712, overlap 3352712 3352736 CGCGATCATGGCGCT CACCGTG ATTAC CACGCTG TTTTATTTCCACCCG RD1_3484 3352578 - 3353813 + | multidrug resistance efflux pump, putative TERM 2786 3353978 - 3353993 + T 73 -6 -4.4891 | TGTCGCAGTTTGTCA GCCCCC CTGC GCGGGC TTTTATGCTCATAGC RD1_3485 3355054 - 3354002 - | permease, putative arsR 3355418 - 3355104 - | ArsR family transcriptional regulator RD1_3488 3355928 - 3355554 - | hypothetical protein TERM 2787 3356451 - 3356465 + G 70 -4.2 -4.57569 | overlap 3356452 GCCCAAGGTGTCGAA CCTGCA CTG TGCAGC TTTTTCACGCAGTCG RD1_3489 3355998 - 3356759 + | hydrolase, putative TERM 2788 3358870 - 3358836 - g 74 -7 -4.30576 | opp_overlap 3358843 GGTTGAGCAGGAAAA CGGCACGCTGCACGGT GTG ATCGTGCAGTTTGGCG GTCAAACTCCGCTCA TERM 2789 3358843 - 3358863 + G 77 -11.9 -3.57263 | opp_overlap 3358836 CAGGAAAACGGCACG CTGCACGGT GTG ATCGTGCAG TTTGGCGGTCAAACT carB 3356857 - 3360216 + | carbamoyl phosphate synthase large subunit TERM 2790 3360627 - 3360645 + G 71 -6 -4.42386 | GCGGTGGAGGTTTTC CGACAGGA CGG TTTTGTCG TTTTCTCCATACCGA RD1_3491 3360369 - 3360671 + | hypothetical protein fabH 3360770 - 3361894 + | 3-oxoacyl-(acyl carrier protein) synthase III RD1_3493 3362377 - 3361913 - | hypothetical protein TERM 2791 3362510 - 3362528 + H 90 -10.2 -4.25104 | GGGGATGATGAGTGG CCGGCGCT CCC AACGCCGG TTTTGGTGAGGCCGA tdk 3362618 - 3363241 + | thymidine kinase RD1_3495 3364191 - 3363238 - | D-isomer specific 2-hydroxyacid dehydrogenase family protein csaA 3364526 - 3364188 - | chaperonin CsaA, putative proC 3365334 - 3364519 - | pyrroline-5-carboxylate reductase TERM 2792 3365342 - 3365372 + r 70 -6.9 -4.08767 | gap 2, overlap 3365342 3365345 TCTTGCATGCGTGTT CTC-CCCCGGAA-GC CGC GTGTTCCGGGGTGGG TTTTACGCGCGTCCG RD1_3499 3365875 - 3365375 - | hypothetical protein RD1_3500 3366448 - 3366206 - | hypothetical protein lgt 3366541 - 3367425 + | prolipoprotein diacylglyceryl transferase RD1_3502 3367422 - 3368480 + | hypothetical protein RD1_3503 3368477 - 3369232 + | hypothetical protein TERM 2793 3369366 - 3369340 - T 77 -7.2 -4.26076 | gap 1 GGACCTTGATCAAAA GCTGCGCG-CG TACCAG CGACGCGCGGC TCAAACGGTTTCGGC RD1_3504 3369864 - 3369367 - | AsnC family transcriptional regulator TERM 2794 3370466 - 3370476 + G 78 -4.6 -4.82901 | TGTCCGCCTGTGCCA CCTG TGA CGGG TTTTTCTACCGGGGG trxB 3370054 - 3371031 + | thioredoxin-disulfide reductase TERM 2795 3371079 - 3371055 - f 85 -11.4 -4.05788 | opp_overlap 3371060 CTGCTTGAAAGCAAA CGCAGCACCC CTGCC GGGTGTTGCG TGCGTACGGTGGGTT TERM 2796 3371809 - 3371829 + G 78 -6.7 -4.65263 | opp_overlap 3371810, overlap 3371810 GATGATCCCGGAACG ACGTGCCCG CGG CGGGGACGA TTTCTTTTCGCAGAT TERM 2797 3372457 - 3372467 + G 75 -8.2 -4.17048 | opp_overlap 3372449 3372456 TCCAAAGCCCAAAGG CGGG TTG CCCG TTCTTTTGCCCGCGC RD1_3506 3371132 - 3372487 + | cytochrome P450 family protein, putative TERM 2798 3372504 - 3372523 + T 85 -12.8 -3.53444 | opp_overlap 3372504 GCGGACACAAAAAAA GCCGCGGC ATGC GTCGCGGC TTTCACCAAGGCTCA TERM 2799 3372523 - 3372504 - T 100 -10.6 -5.71712 | opp_overlap 3372504 GCGGACACAAAAAAA GCCGCGGC ATGC GTCGCGGC TTTCACCAAGGCTCA RD1_3507 3372774 - 3372550 - | hypothetical protein hspH 3373192 - 3372779 - | HSP20 family protein purE 3373658 - 3374146 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit purK 3374139 - 3375206 + | phosphoribosylaminoimidazole carboxylase ATPase subunit RD1_3512 3376275 - 3375211 - | phosphonate metabolism domain-containing protein TERM 2800 3375970 - 3376004 + g 76 -9.3 -4.13995 | gap 2, overlap 3375971 CGTCTCCAGCCGCAA TTGCGCCC--GCAGGTC CGT GACCAGCTTGGGCGCAG TTTCCTTTATCGCGC RD1_3513 3377074 - 3376343 - | lipase, putative TERM 2801 3376871 - 3376849 - G 71 -7 -4.25283 | ATTGGCGCAGCAAAA TGCCACCCAT GGA ATGGGTCACA AAATCGACGCGGGGC TERM 2802 3377588 - 3377578 - g 74 -3.2 -4.82667 | overlap 3377581 3377583 GGAGGAGATGAAAAA CCAC AGG GTGA AACCCGACAGCCTGT RD1_3514 3377213 - 3377668 + | hydrolase, putative RD1_3515 3378482 - 3377634 - | hypothetical protein TERM 2803 3378665 - 3378640 - R 100 -16.1 -4.96848 | opp_overlap 3378638 3378635 TGCGCGATAGAAAAA GGGGCCCGCCA TCTC TGGCGCGCCCC CATAGTTCATACCGT groEL 3380338 - 3378695 - | chaperonin GroEL TERM 2804 3378937 - 3378968 + g 71 -7.8 -4.10657 | overlap 3378938 CGCTTTCACGGATCT TGCCTGCGACGACG GATC CGTCGACGCCTGCG TTTTCCGCGATCTGA groES 3380705 - 3380394 - | co-chaperonin GroES TERM 2805 3380617 - 3380644 + g 78 -7.1 -4.71234 | gap 1 GGTTTTTCTTTCGCG CTTTCGG-GGAT GATCA ATCCGCCGGAAG TTTTCTCTTCGCTTT TERM 2806 3380922 - 3380901 - R 74 -7.1 -4.23892 | overlap 3380902 CTCAATCACCCAAAA CCCGAGGCG TCAG CGCCACGGC TTCCGCCCCTGCAGA RD1_3518 3381555 - 3380887 - | hypothetical protein RD1_3519 3381824 - 3382537 + | hypothetical protein TERM 2807 3382578 - 3382556 - f 72 -11.9 -2.68088 | opp_overlap 3382557, overlap 3382555 3382549 3382548 CGCCAAAGTGACAAG GCCGCGCCC AATTA GGGCGCGGT TTTTTCATGTCCGCC TERM 2808 3382557 - 3382577 + F 100 -15.4 -5.21709 | opp_overlap 3382556 3382555 3382549 3382548 GCCAAAGTGACAAGG CCGCGCCC AATTA GGGCGCGG TTTTTTCATGTCCGC TERM 2809 3382625 - 3382611 - f 91 -7.8 -4.88407 | opp_overlap 3382611 TCAGCCAAGTAAAAA TGCCGC GCC GCAGCA TTGATGGGGTGACAA TERM 2810 3383546 - 3383517 - g 71 -7.1 -4.26589 | overlap 3383508 ATGACACAGTGAAAA CCGTCGCGGAAAA GAGC TTTGGCGCAACGG TCGATGCGGATACTG ppaC 3382700 - 3383620 + | putative manganese-dependent inorganic pyrophosphatase TERM 2811 3383642 - 3383684 + F 100 -15 -4.96848 | gap 2, overlap 3383645 3383646 GGCCGCGTGCCTTTT CACTTGTCGGCCAGCGTCGG TTCGC CCG-CGCTGGCCGACA-GTC TTTTTATCTGCAAAG TERM 2812 3383645 - 3383682 + F 100 -20 -4.11141 | gap 1, overlap 3383642 3383646 CGCGTGCCTTTTCAC TTGTCGGCCAGCGTCGG TTCGC CCG-CGCTGGCCGACAG TCTTTTTATCTGCAA TERM 2813 3383646 - 3383681 + F 100 -21.3 -3.05962 | gap 1, overlap 3383645 3383642 GCGTGCCTTTTCACT TGTCGGCCAGCGTCGG TTCGC CCG-CGCTGGCCGACA GTCTTTTTATCTGCA TERM 2814 3383745 - 3383760 + G 81 -5.4 -4.84761 | gap 1 CTTTCGGATGTATCG GCGCAGT ATG AC-GCGC TTTTTGTCGACCTCT TERM 2815 3383892 - 3383837 - g 85 -16.1 -3.13403 | gap 1, opp_overlap 3383887, overlap 3383835 GGCCTTGCAGGAATA CCGCGCGCAAG-GGGGCAAGGTCGTG CTTGT CACCAACTCGCCCCGCCCGCGCGCCG GGGTTCAGAAACAGC TERM 2816 3384508 - 3384493 - g 79 -8.2 -4.54727 | overlap 3384494 CCCGGGAAACCAAAA CCGGGC ACCA GCCCGA TGCGCAAGCCCTTGA RD1_3521 3383709 - 3384581 + | hypothetical protein RD1_3522 3384671 - 3385114 + | MaoC-like protein, putative ribF 3385175 - 3386107 + | riboflavin biosynthesis protein RibF RD1_3524 3386104 - 3386574 + | hypothetical protein TERM 2817 3386793 - 3386805 + G 70 -4.8 -4.46212 | overlap 3386788 GCGTGTTATGGTCAG CCGT GGCAG ACGG TTTTCTGCTCACCAG TERM 2818 3386973 - 3386950 - g 73 -8.8 -3.97308 | TCGAAACAGAGGAAA GCCGCGGC GTGCACGG GCCGCAGC GTGGTCCCGTCTCGA ltaE 3386574 - 3387611 + | low-specificity L-threonine aldolase RD1_3526 3388379 - 3387597 - | alpha/beta fold family hydrolase TERM 2819 3388253 - 3388265 + g 70 -3.3 -4.58395 | opp_overlap 3388251 3388250 CCGGAAGATCAATCG CGGTC AGG GACAG TTTTTCCCCGATAAC RD1_3527 3388975 - 3388376 - | hypothetical protein RD1_3528 3389090 - 3390109 + | ribose-phosphate pyrophosphokinase putative RD1_3529 3390706 - 3390131 - | putative lipoprotein TERM 2820 3390679 - 3390667 - G 74 -5.5 -4.52873 | CCGTCACAAAAACAA CTGCC ACG AGCAG TCCAAACAGATTTAG TERM 2821 3391216 - 3391229 + r 74 -2.3 -5.09762 | opp_overlap 3391211 AAAGACAAATCCGCC GATGC GACC GCCTC TTTTTCTATTGCGAT TERM 2822 3391353 - 3391379 + r 80 -5.1 -4.85599 | opp_overlap 3391349, overlap 3391355 GTGGCGACACAGCTT GTGCGCAGG-CCG AGC CGGACCT-CGCTC TTTTTCTGGCGTACG RD1_3530 3394030 - 3391589 - | chemotaxis protein, putative TERM 2823 3392286 - 3392303 + g 75 -2 -4.96848 | gap 1 AAGTCCTCGGCGGAT TGCG-CA AGCGA TGACGCA TTTTTCTGTGACCGA TERM 2824 3393517 - 3393548 + g 70 -3.6 -4.66609 | gap 1, opp_overlap 3393517 3393518, overlap 3393518 3393520 3393544 CTACTTTAGACGAAA CGCTCACCCTGTTGC GCA GCAACTGAGTG-GCA TTTTTCAATGCGATG TERM 2825 3394394 - 3394415 + r 86 -12.9 -3.70811 | opp_overlap 3394394 GTCACAACAAAGAAA GGCCCCGCG TCTC CGCGAGGCC TTTGAAATTGTCTGA TERM 2826 3394415 - 3394394 - R 100 -15.1 -4.73677 | opp_overlap 3394394 GTCACAACAAAGAAA GGCCCCGCG TCTC CGCGAGGCC TTTGAAATTGTCTGA atpC 3394856 - 3394440 - | F0F1 ATP synthase subunit epsilon atpD 3396293 - 3394869 - | F0F1 ATP synthase subunit beta atpG 3397188 - 3396313 - | F0F1 ATP synthase subunit gamma TERM 2827 3396520 - 3396495 - G 71 -5.3 -4.4017 | GCAATGCCGAGAAAA TCTGCGTCGCA ACAC CGCGTGGCAGA AGGTCAGCCAGAATG atpA 3398742 - 3397204 - | F0F1 ATP synthase subunit alpha atpH 3399303 - 3398743 - | ATP synthase F1, delta subunit RD1_3537 3399580 - 3399476 - | hypothetical protein TERM 2828 3399566 - 3399539 - G 71 -9.2 -3.75332 | gap 1, opp_overlap 3399553 ATTTTGCAACGCAAA GGCAGC-CAGATT GCG ATTCTGCGCTGCC GAAACTTTGTGCAAT RD1_3538 3400337 - 3399603 - | hypothetical protein TERM 2829 3399926 - 3399897 - G 85 -12.1 -3.70902 | gap 1, opp_overlap 3399908 CCGCCCATAGCCAAA GGGCGTGCGGTCGC GCC GCGCCCACA-GCCC CGCACGGTTTGGCAC gloB 3400401 - 3401168 + | hydroxyacylglutathione hydrolase, putative clpA 3401344 - 3403665 + | ATP-dependent Clp protease, ATP-binding subunit ClpA, putative TERM 2830 3403719 - 3403686 - T 79 -12.5 -2.88544 | opp_overlap 3403686 TGGTATGGTGATACA TTGAGCCTCTCTGTT GTAA AACAGGGAGGCTCGA TTGCATTGAAAACCG TERM 2831 3403686 - 3403719 + T 100 -16.9 -3.17075 | opp_overlap 3403686 TGGTATGGTGATACA TTGAGCCTCTCTGTT GTAA AACAGGGAGGCTCGA TTGCATTGAAAACCG RD1_3541 3404686 - 3404531 - | hypothetical protein TERM 2832 3407628 - 3407593 - g 78 -10.4 -3.93038 | gap 1, overlap 3407594 3407612 GAGGCCAAGACCAAA CTTGCGG-GCGCCAAGA TCA CCATGGCGCACCGCAAT GCGCTGCTGGCAATC TERM 2833 3407627 - 3407594 - g 75 -13.9 -2.95341 | gap 1, overlap 3407593 3407612 AGGCCAAGACCAAAC TTGCGG-GCGCCAAGA TCA CCATGGCGCACCGCAA TGCGCTGCTGGCAAT TERM 2834 3408689 - 3408706 + G 77 -11.3 -3.63515 | TCGCCGATGACCGGG CCAGCAC CAAT GTGCTGG TTCTTGCGGGTCCCG RD1_3542 3405175 - 3410487 + | ATP-dependent DNA helicase TERM 2835 3410847 - 3410831 - f 100 -5.9 -5.67283 | opp_overlap 3410831 AAGGTAAATAAAAAA TGACACT TGT AATGTCA ACTTTTTCTGACACA pucB 3410974 - 3411129 + | light-harvesting protein B-800/850, beta chain pucA 3411142 - 3411498 + | light-harvesting protein B-800/850, alpha chain TERM 2836 3412389 - 3412400 + G 76 -7.2 -4.51174 | TGGTCCAGAAGCCCG GCCG CAAA CGGC TTTTAGTTGTCATCG TERM 2837 3412654 - 3412672 + G 78 -10.2 -3.91897 | overlap 3412656 CATCCTGTCGGCTTT TGGCGGCG GTG CGCCGCTG TTTCTGGCTGGAACA TERM 2838 3412656 - 3412670 + G 79 -12.8 -3.5511 | overlap 3412654 TCCTGTCGGCTTTTG GCGGCG GTG CGCCGC TGTTTCTGGCTGGAA pucC 3411599 - 3413056 + | PucC protein TERM 2839 3413246 - 3413236 - g 75 -2.4 -4.96501 | opp_overlap 3413239 GCCTACAAAAAGAAA CTGG CAT CCGG CGGTGCGGTTTTGTT RD1_3546 3413053 - 3414102 + | hypothetical protein TERM 2840 3414151 - 3414186 + T 100 -19.2 -3.34398 | opp_overlap 3414152 3414157, overlap 3414152 3414157 CGGCATAGACTGAAA ACAAAAGGGCTGATCC CGCC GGATCAGCCCTTTTGC TGTTTCAGCCAACGC TERM 2841 3414185 - 3414152 - T 100 -22.7 -4.26188 | opp_overlap 3414151 3414152 3414157, overlap 3414157 GGCATAGACTGAAAA CAAAAGGGCTGATCC CGCC GGATCAGCCCTTTTG CTGTTTCAGCCAACG TERM 2842 3414152 - 3414185 + T 100 -22.7 -2.60496 | opp_overlap 3414152 3414157, overlap 3414151 3414157 GGCATAGACTGAAAA CAAAAGGGCTGATCC CGCC GGATCAGCCCTTTTG CTGTTTCAGCCAACG TERM 2843 3414180 - 3414157 - T 100 -16.8 -5.11836 | opp_overlap 3414152 3414151 3414157, overlap 3414152 AGACTGAAAACAAAA GGGCTGATCC CGCC GGATCAGCCC TTTTGCTGTTTCAGC TERM 2844 3414157 - 3414180 + T 100 -16.8 -4.49756 | opp_overlap 3414157 3414152, overlap 3414152 3414151 AGACTGAAAACAAAA GGGCTGATCC CGCC GGATCAGCCC TTTTGCTGTTTCAGC RD1_3547 3414600 - 3414211 - | putative potassium efflux system protein phaF 3414884 - 3414597 - | pH adaptation potassium efflux system protein TERM 2845 3414905 - 3414917 + r 70 -3.3 -4.82667 | overlap 3414902 3414906 GATCTCCTTCAGGCG ACGCT CGT AGCGG TTTTTGATCTCATCC phaE 3415381 - 3414881 - | putative monovalent cation/H+ antiporter subunit E phaD 3416924 - 3415383 - | putative monovalent cation/H+ antiporter subunit D TERM 2846 3415777 - 3415750 - G 71 -6.3 -4.37092 | overlap 3415753 3415757 AGCTTGCCCAGAAAA CCA-GACAGGGGC GGCA GCCCC-GCCATGG CAATCGCACCGGCAA phaC 3417283 - 3416921 - | putative monovalent cation/H+ antiporter subunit C phaA 3420158 - 3417285 - | putative monovalent cation/H+ antiporter subunit A TERM 2847 3420295 - 3420284 - RH 78 -5.8 -4.7254 | overlap 3420285 3420288 ACCGCGCAGGAAAAA CGCA TACC TGCG GCCAGATATCGCATC RD1_3553 3420712 - 3420371 - | hypothetical protein TERM 2848 3420448 - 3420473 + Gg 75 -8.1 -4.17316 | opp_overlap 3420441, overlap 3420464 CCTGAACACCGCGCC GGTCGCGCACG ACTT CGAGGGCGGCC TTCTTTTCGGCCCAT TERM 2849 3420733 - 3420715 - gR 74 -7.4 -4.10007 | opp_overlap 3420730 AGAAGCGTTTCAAAA GACCTTGA ACG TCATGGTC GACATCGACCTTTCG RD1_3555 3420948 - 3420709 - | hypothetical protein RD1_3554 3420368 - 3420853 + | hypothetical protein hisB 3421094 - 3421681 + | imidazoleglycerol-phosphate dehydratase hisH 3421684 - 3422322 + | imidazole glycerol phosphate synthase subunit HisH RD1_3558 3423136 - 3422345 - | hypothetical protein TERM 2850 3423032 - 3423015 - G 71 -5.5 -4.36914 | CCGCTTTCGACAAAA TCCGCGT GCTC ACGCCGA CGCCGCCCAATGCGA RD1_3559 3423613 - 3423224 - | hypothetical protein hisA 3423770 - 3424489 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisF 3424566 - 3425327 + | imidazole glycerol phosphate synthase subunit HisF TERM 2851 3425382 - 3425367 - g 73 -4.6 -4.65895 | overlap 3425368 3425369 TTCTGGACCGAAAAA CTGCCG ATCC CGCCAG CAGCTGGACGGCGCA hisE 3425324 - 3425641 + | phosphoribosyl-ATP pyrophosphatase RD1_3563 3426121 - 3425651 - | CoA-binding domain-containing protein TERM 2852 3426186 - 3426156 - R 100 -9.6 -5.40474 | overlap 3426158 ACGGGGCGAAAAAAA GAGCGTCCAGTGCC TGA GGCAAAGGACGCTG CAAGGTACGGAACGA TERM 2853 3426184 - 3426158 - R 93 -12.2 -4.34482 | overlap 3426156 GGGGCGAAAAAAAGA GCGTCCAGTGCC TGA GGCAAAGGACGC TGCAAGGTACGGAAC RD1_3564 3426645 - 3426331 - | hypothetical protein RD1_3565 3427446 - 3426673 - | RNA methyltransferase TERM 2854 3427562 - 3427524 - R 79 -13.8 -2.71144 | CACCGCTTGTAATCA CGCCCACACTGTTTATGC AAT GCATCGGCAGCGTGGGCG ACAGGCCGCAAGGTG RD1_3567 3429366 - 3427711 - | Na+/Pi-cotransporter, putative TERM 2855 3427874 - 3427884 + g 71 -6.8 -4.22041 | AGGCGCCCGATATGG CTGC GCT GCAG TTTCTGTTCCACTTT TERM 2856 3428292 - 3428280 - G 73 -9.1 -3.86897 | opp_overlap 3428291 TCCACGCGTCATAAA GCGGT TCG ACCGC GACCAGCATCTGTTC TERM 2857 3429207 - 3429220 + g 70 -5.2 -4.57569 | CCATGCCGGTGCCCG CCGC AAGCAA GCGG TTTTTCGCGGAATGG RD1_3568 3430185 - 3429382 - | Ser/Thr protein phosphatase family protein, putative TERM 2858 3429646 - 3429658 + g 83 -4.7 -5.1356 | ATAGCCCGCCACGAT CTCGC TTA GCGCG TTTTTGTTGCTGAGC RD1_3569 3430991 - 3430182 - | inner membrane component of binding-protein-dependent transport system RD1_3570 3431881 - 3430988 - | glycerol-3-phosphate ABC transporter, permease protein, putative TERM 2859 3431514 - 3431495 - G 76 -10 -3.79113 | AGGGGTGTAGAAGAA CAGCCACA GGTT TGCGGCTG CAATCATCGGCAGGA TERM 2860 3431561 - 3431574 + g 74 -3.7 -4.81249 | opp_overlap 3431547 3431562, overlap 3431548 3431562 3431571 GGCGGTGCGCACAAA ACCGC GCGC GCGGA TTTTTCCGTTTGCCC TERM 2861 3431573 - 3431562 - G 74 -7.2 -4.36914 | opp_overlap 3431548 3431561 3431562 3431571, overlap 3431547 GCGGTGCGCACAAAA CCGC GCGC GCGG ATTTTTCCGTTTGCC TERM 2862 3431900 - 3431942 + r 74 -8.2 -4.00445 | overlap 3431901 GCCGCTCCGCCTTGG GACAGCTCGGGCCGATGCGT TTC ATGCACCGGCCCGACCGGAG TTGTTATTGGTAGTC TERM 2863 3431901 - 3431941 + r 75 -11.7 -2.99544 | overlap 3431900 CCGCTCCGCCTTGGG ACAGCTCGGGCCGATGCGT TTC ATGCACCGGCCCGACCGGA GTTGTTATTGGTAGT RD1_3571 3433214 - 3431946 - | glycerol-3-phosphate ABC transporter, periplasmic binding protein RD1_3572 3434281 - 3433262 - | sugar ABC transporter, ATP-binding protein, putative deoR 3435057 - 3434278 - | DeoR family transcriptional regulator RD1_3574 3435539 - 3435219 - | ABC transporter, periplasmic substra TERM 2864 3435513 - 3435499 - G 71 -7 -4.19506 | overlap 3435500 ACCCCAACCGGAAAA CGGACC TCG GGGCCG TGGCCCCATTCAAGC RD1_3575 3435897 - 3435619 - | sugar ABC transporter, ATP-binding protein, putative RD1_3576 3436172 - 3435912 - | sugar ABC transporter, ATP-binding protein, putative TERM 2865 3435994 - 3436021 + g 76 -5.4 -4.66609 | gap 1, overlap 3435997 GCCATCAGATCTGCT CCGCGTGCGAGCG ATG CGA-CACGCGCGG TTTTTACATACCATG RD1_3577 3439117 - 3436733 - | sensory box histidine kinase/response regulator, putative TERM 2866 3437941 - 3437953 + g 73 -9.1 -3.86897 | overlap 3437940 AATTTACCTTCTCTC GACGC GGC GCGTC TTTCTCCAGACTGGA RD1_3578 3439729 - 3439235 - | hypothetical protein RD1_3579 3439994 - 3440608 + | LuxR family DNA-binding response regulator RD1_3580 3440772 - 3441335 + | hypothetical protein TERM 2867 3441707 - 3441730 + F 71 -9.6 -3.53224 | TGCCACGCTGACCTA TCGTTCGCTG CAGG CAGCGGATGA TTTGGCAAGAGACTC TERM 2868 3441983 - 3442029 + G 81 -5.8 -4.82901 | gap 1, opp_overlap 3441997, overlap 3441984 TCAGGCGCTCGCGGC GGGGGAG-GTCACAACCAACC TCGAAC GGCTGGTTGTGGCACGTCCCA TTTTTATGGGCGAGG TERM 2869 3442394 - 3442375 - g 74 -6.4 -4.41047 | gap 1, opp_overlap 3442391, overlap 3442378 ACGCCGCAATGAAAA GCACTGCGC TTG ACGCAG-GC TCCGCGGCAATCATG TERM 2870 3442920 - 3442886 - g 73 -4.8 -4.63486 | overlap 3442890 ATTTGTCGAAGAAAA TCCAGCCGATCCCAGC AAA GCCATGTTCGGCGAGA TCCGGATCGAGGGTC mcpA 3441840 - 3444134 + | methyl-accepting chemotaxis protein McpA TERM 2871 3444496 - 3444513 + F 84 -6.3 -5.00616 | CTTGCCGCGCTGGGT CGTACAA GAAT TTGTGCG TTTTTTACCAAAGGG TERM 2872 3445128 - 3445078 - g 76 -14.1 -3.02511 | opp_overlap 3445117, overlap 3445091 TCGATGTGGTTAAGA CCACGGCAGAACACGTCGACCT-GC TTG ACGAGGCTG-CGCGTTCTGCCGCGG GCAAGCACATTCTGG TERM 2873 3445522 - 3445473 - g 75 -8.6 -4.1822 | gap 1, overlap 3445510 3445511 TCCCAGTTCAACAAA GCCTATCGTGCGCAATTTGGCTG CACAC CAACCGAAACGCGCA-GATCGGC GCAGCAGGTCCAAGG RD1_3583 3444591 - 3445553 + | AraC family transcriptional regulator TERM 2874 3445613 - 3445575 - f 74 -8.1 -3.93262 | gap 1, opp_overlap 3445583 CTTAACAAACGGAAA CCTCTCATTGG-GTCGGC CTGC GCCGACACCATTGTGATG CCTTGTTGTCTTTTG TERM 2875 3445583 - 3445605 + F 70 -9.9 -3.45434 | gap 1, opp_overlap 3445575 ACGGAAACCTCTCAT TGG-GTCGGC CTGC GCCGACACCA TTGTGATGCCTTGTT hyuA 3445641 - 3447668 + | hydantoin utilization protein A, putative TERM 2876 3447782 - 3447800 + G 74 -5.3 -4.57341 | opp_overlap 3447796, overlap 3447796 GTACCTGCTATTCCT TCGTGAT CTACA ATCGCGA TTTTTCCAACGCGTT TERM 2877 3448140 - 3448160 + G 72 -2.4 -4.7254 | overlap 3448138 3448141 GCGTATTACCCCGGT CCGCCTGT TCCGC GCGGGCGA TTTTTGCTCGGACGT RD1_3585 3447673 - 3449628 + | hydantoin utilization protein B, putative RD1_3586 3449741 - 3449631 - | hypothetical protein RD1_3587 3449735 - 3450463 + | branched-chain amino acid ABC transporter, ATP-binding protein, putative TERM 2878 3450925 - 3450893 - g 70 -4.7 -4.44667 | overlap 3450894 3450895 GGGGTCAACAACAAA TGCTGGCCATCGGGC GTG GCCTGATGACCAATC CCAAGCTGATGCTGG RD1_3588 3450463 - 3451197 + | branched chain amino acid ABC transporter, ATP-binding protein, putative TERM 2879 3451312 - 3451325 + G 74 -6.7 -4.323 | TGAACTTCGCGCATG GGCAA TACA TTGCC TTTTGCGTCTTTGCC RD1_3589 3451194 - 3452108 + | branched-chain amino acid ABC transporter, permease protein RD1_3590 3452112 - 3453140 + | branched-chain amino acid ABC transporter, permease protein, putative RD1_3591 3453181 - 3454350 + | branched-chain amino acid ABC transporter, periplasmic binding protein, putative TERM 2880 3454378 - 3454400 + T 100 -14.9 -5.71712 | opp_overlap 3454375 3454372 3454380 ATGGTCAAAGCAGCA GAGTGCCCC AATCC GGGGCACTC TTTTTTTCTGTAAGG TERM 2881 3454398 - 3454380 - T 75 -12.4 -2.8934 | opp_overlap 3454378, overlap 3454375 3454372 GGTCAAAGCAGCAGA GTGCCCCA ATC CGGGGCAC TCTTTTTTTCTGTAA RD1_3592 3455929 - 3454820 - | hypothetical protein TERM 2882 3455533 - 3455544 + gT 77 -7.2 -4.24948 | opp_overlap 3455527 CGACAATCATCCCCA CCGG AGAG CCGG TTTTCAGTATCATCC RD1_3593 3456951 - 3455875 - | multidrug resistance efflux pump, putative RD1_3594 3458432 - 3457518 - | two-component response regulator, putative RD1_3595 3461763 - 3458416 - | two-component hybrid sensor and regulator, putative TERM 2883 3459785 - 3459795 + g 75 -2.4 -5.00138 | overlap 3459775 3459774 GTCTTGGCGGTGTTT GCCG CCT CCGC TTTTTCCTTTGCCTG TERM 2884 3461049 - 3461029 - G 70 -3.9 -4.59773 | overlap 3461030 3461031 GGGCACGGGCAAAAA CCGCAGGTA GTC TACCTGCTC ACCAACCTGCGCGAT RD1_3596 3461997 - 3463268 + | ABC transporter, substrate-binding protein, putative TERM 2885 3463280 - 3463309 + F 100 -14.3 -4.56597 | gap 1 GTAAAAAGCGGCATC GGGGGGCGC-GCTT CGT AGGCCGCGCCTCCC TTTTTCCCAGACAAG RD1_3598 3463340 - 3464266 + | branched-chain amino acid transport system permease component, putative TERM 2886 3464714 - 3464732 + G 74 -7.3 -4.42806 | overlap 3464716 GGGGTTGCGATGTTC CGCCGCC GGGTG GGCGGGG TTTATTTCGCAATCA RD1_3599 3464279 - 3465412 + | branched-chain amino acid ABC transporter, permease protein, putative RD1_3600 3465424 - 3466179 + | branched-chain amino acid ABC transport, ATP-binding protein, putative RD1_3601 3466191 - 3466880 + | ABC transporter, ATP-binding protein, putative fmdA 3466905 - 3468134 + | amidase TERM 2887 3468174 - 3468142 - f 83 -11.9 -3.66356 | overlap 3468143 ATCTTTAATTCCAAA CGCCGAGCGATGTGC CAT GCGCATCGCTCGCCC ATCCTGAATGCAGCC TERM 2888 3468173 - 3468143 - f 83 -15.4 -2.79492 | overlap 3468142 TCTTTAATTCCAAAC GCCGAGCGATGTGC CAT GCGCATCGCTCGCC CATCCTGAATGCAGC RD1_3603 3468200 - 3468529 + | hypothetical protein RD1_3604 3468795 - 3468607 - | hypothetical protein TERM 2889 3468866 - 3468879 + H 91 -9.5 -4.61527 | opp_overlap 3468865 3468864 3468866, overlap 3468848 GACCGCCTAAAAACC CGGCG GTTG CGCCG TTTTTCCCCGCTTTT RD1_3605 3469096 - 3469686 + | hypothetical protein RD1_3606 3469686 - 3470480 + | hypothetical protein RD1_3607 3471884 - 3470580 - | C4-dicarboxylate transport system, permease protein, putative TERM 2890 3470757 - 3470747 - G 75 -8.2 -4.22927 | TGATCAACAGACAAA GCCC ATA GGGC GGTGTGACCAGCCCA TERM 2891 3471799 - 3471780 - G 78 -4.9 -4.7254 | ATCCTCGATGAAAAA GACCGGC ACCACG GCCAGCC CCAGCGCAAAAGCGA RD1_3608 3472365 - 3471871 - | TRAP transporter, DctQ-like membrane protein, putative RD1_3609 3473407 - 3472433 - | C4-dicarboxylate transport system, substrate-binding protein, putative TERM 2892 3472774 - 3472790 + g 71 -7.9 -4.08216 | AGAACTTCATCTGTT CGATGCC TGC GGCCTCG TTTTCAGCCGCGTCG thiM 3473809 - 3474582 + | hydroxyethylthiazole kinase TERM 2893 3474968 - 3474981 + G 84 -9.5 -4.56597 | opp_overlap 3474931, overlap 3474945 GCTGGTGGACTACCT CGGGC TGGG GCCCG TTTTTGGGACGGCAA thiDE 3474579 - 3475223 + | bifunctional ThiED protein TERM 2894 3475591 - 3475601 + G 71 -8.2 -4.11216 | overlap 3475590 GGCGGTCGATACCCT GCGC TGC GCGC TTTTGCCGATCGCGA thiD 3475220 - 3476029 + | phosphomethylpyrimidine kinase tenA 3476083 - 3476769 + | transcriptional regulator, putative RD1_3614 3477809 - 3476844 - | glycerone kinase, putative TERM 2895 3476933 - 3476953 + g 71 -6 -4.36914 | overlap 3476935 CCAGATTGCCGCGCA AGGCCGCC CGGAT GGCGGCTG TTTTATGCAAACCAC TERM 2896 3476935 - 3476951 + g 76 -10.8 -3.79419 | overlap 3476933 AGATTGCCGCGCAAG GCCGCC CGGAT GGCGGC TGTTTTATGCAAACC TERM 2897 3478617 - 3478631 + G 82 -11.4 -3.92869 | GGTGGATGTCGCACC GCGTGC TCG GCACGC TTTATCGCTCCGTCC RD1_3615 3477980 - 3479311 + | hypothetical protein TERM 2898 3479560 - 3479537 - g 79 -8 -4.57569 | opp_overlap 3479547, overlap 3479539 GCAGCCGTCGAAAAA GGCGAAGCCG CATA CGGCCCCGTC GATATGATGTTCTGC RD1_3616 3479333 - 3480058 + | short chain dehydrogenase/reductase family oxidoreductase xylB 3480139 - 3481680 + | xylulose kinase, putative RD1_3618 3481677 - 3482582 + | hydrolase, putative TERM 2899 3482642 - 3482668 + F 73 -6.4 -4.43208 | overlap 3482631 CAGGGCGCGCAGATC GCGGGGCGCATA TAT TTTGCGCGCAGC TTTCTTTACACATGT RD1_3619 3482918 - 3483841 + | ABC transporter, permease protein, putative RD1_3620 3483838 - 3484731 + | sugar ABC transporter permease protein, putative RD1_3621 3484894 - 3486315 + | ABC transporter, substrate-binding protein, putative TERM 2900 3486850 - 3486884 + G 76 -9.9 -3.78193 | gap 1, overlap 3486872 GCAACGCCAGCGTGT CGCCATGGGCCGCGCG ATCG TGCGCGACCC-TGACG TGTTTCTCTTTGATG RD1_3622 3486425 - 3487504 + | SN-glycerol-3-phosphate ABC transporter, ATP-binding protein TERM 2901 3487567 - 3487554 - g 81 -8.1 -4.65916 | overlap 3487556 CGTATTGGAAGAAAA GGGCA GACT TGCCC TGCGCGAGATAGACC TERM 2902 3487850 - 3487860 + G 71 -8.2 -4.07568 | opp_overlap 3487842 TCTATAACGTGGATC CCGC CGT GCGG TTTTGGGCGACGCCG TERM 2903 3487959 - 3487977 + G 73 -10.2 -3.60296 | TGTGACCTTCGGGGA GGGCGCGA TGG TCGAGCCC TTTGCCATCGGCATG TERM 2904 3488294 - 3488306 + G 70 -10.5 -3.50808 | opp_overlap 3488278, overlap 3488293 CCCCGCAATTTGTCT GCCCC GGC GGGGC TATTGTTCTGGTGGG xdh 3487525 - 3488559 + | D-xylulose reductase, putative rpiB 3489128 - 3488673 - | ribose-5-phosphate isomerase B tpiA 3489901 - 3489125 - | triosephosphate isomerase TERM 2905 3489442 - 3489415 - G 84 -9.8 -4.27617 | gap 1, opp_overlap 3489420 3489422, overlap 3489416 CATAGGCCAGCAAAA CCGGCGCGCTGCC GGT AAC-GCGCGCCAG CGCGGCGCTGACCTG TERM 2906 3489420 - 3489472 + g 70 -10.3 -3.53012 | opp_overlap 3489415 3489416, overlap 3489422 GCCAGCAAAACCGGC GCGCTGCCGGTAACGCGCGCCAGCG CGG CGCTGACCTGCGCTGCCAGCACCTC TTTGGCGCGCCCCGC TERM 2907 3489422 - 3489470 + g 72 -11.5 -3.34398 | opp_overlap 3489415 3489416, overlap 3489420 CAGCAAAACCGGCGC GCTGCCGGTAACGCGCGCCAGCG CGG CGCTGACCTGCGCTGCCAGCACC TCTTTGGCGCGCCCC RD1_3626 3490867 - 3489935 - | hypothetical protein TERM 2908 3490149 - 3490163 + g 76 -12.8 -3.36175 | opp_overlap 3490148 3490149 AACGCGGCGGTAAAG GGGCGG TGA CCGCCC TTGTCCATCAGGCTT RD1_3628 3491697 - 3490867 - | hydrolase, putative TERM 2909 3491241 - 3491219 - G 74 -6.3 -4.57569 | gap 2, overlap 3491221 GGATTGGTGCAAAAA GCGG-GCA-CG CCG CGCTGCGCCGC CGGGGCCAGCCATGT xylB 3492932 - 3491694 - | xylulose kinase, putative RD1_3630 3493902 - 3492925 - | hypothetical protein TERM 2910 3493677 - 3493687 + g 71 -8.2 -4.09685 | overlap 3493672 TCGGTTGATCGGCGC GGGC CTC GCCC TTTTCCAGACTGGCC glpD 3495398 - 3493899 - | glycerol-3-phosphate dehydrogenase TERM 2911 3494882 - 3494900 + g 70 -4.4 -4.57073 | overlap 3494861 ATGTGCAGGCCGTGC GGGTCAGA ACC TCGGCCCC TTTTTCAGCGGCATC fucA 3496048 - 3495395 - | L-fuculose phosphate aldolase serA 3497093 - 3496053 - | D-3-phosphoglycerate dehydrogenase, putative RD1_3634 3498654 - 3497086 - | FGGY family of carbohydrate kinases RD1_3635 3499775 - 3498651 - | sugar ABC transporter, ATP-binding protein, putative ugpC 3500881 - 3499772 - | SN-glycerol-3-phosphate transport ATP-binding protein TERM 2912 3500451 - 3500468 + g 75 -7.7 -4.14392 | gap 1, overlap 3500455 CCCGCAAGGGCGCGG GCAAGCGC CGT GCGC-TGC TTTTGACCGTTGGAC RD1_3638 3501742 - 3500885 - | sugar ABC transporter, permease protein, putative TERM 2913 3501034 - 3501049 + g 73 -9 -3.85698 | TGAAGGCGAGCGCGC CAACCG TGAC CGGTTG TTTGTCCGCCGAGGC TERM 2914 3501123 - 3501107 - G 71 -5.7 -4.35044 | overlap 3501116 3501117 CCAGGCAAAGATAAA CGCCAGC AAC GCCGCCG CCGCGATCCCCGGCC RD1_3639 3502676 - 3501753 - | ABC transporter permease protein, putative TERM 2915 3502747 - 3502777 + r 76 -9.5 -3.85698 | opp_overlap 3502746 3502743, overlap 3502748 3502774 CGTATGTGAAACAGT GGGGCCCGCCTGC ACAGG GCTGGCGGACCCG TTTGTCAAGGCCGGC TERM 2916 3502748 - 3502776 + r 79 -13 -2.91276 | opp_overlap 3502746 3502743, overlap 3502747 3502774 GTATGTGAAACAGTG GGGCCCGCCTGC ACAGG GCTGGCGGACCC GTTTGTCAAGGCCGG RD1_3640 3504238 - 3502793 - | sugar ABC transporter, substrate-binding, putative TERM 2917 3504040 - 3504068 + g 70 -3.1 -4.62069 | gap 1, overlap 3504046 3504049 AGGGGTGCTGGTTGA GCA-GCAGGCGC ACTGTG GTGCCTTCGTGC TTTTTCCAGTCAAAG TERM 2918 3504203 - 3504221 + g 80 -3.1 -5.02323 | opp_overlap 3504206, overlap 3504196 3504206 CATCCTGCCAGCCGT AAAGCTG TCTAT CAGCTTG TTTTCTTTATCGTAC TERM 2919 3504206 - 3504218 + g 73 -4.8 -4.58946 | opp_overlap 3504206, overlap 3504196 3504203 CCTGCCAGCCGTAAA GCTG TCTAT CAGC TTGTTTTCTTTATCG TERM 2920 3504299 - 3504283 - R 80 -9.3 -4.08945 | ATCAGTCTTGCAAAA GCGCGCG TGC CGTGCGC TCATCGGTGATGAGG eryD 3505225 - 3504269 - | ery operon repressor, putative TERM 2921 3505479 - 3505459 - H 81 -2.5 -5.32599 | overlap 3505460 3505463 GAGAAAAGAGAAAAA TCAAGCATA TGC CATGCTCGG CGGTCAAAAATAATG RD1_3642 3505560 - 3506342 + | L-aspartate dehydrogenase kynU 3507743 - 3506535 - | kynureninase, putative TERM 2922 3507496 - 3507467 - G 74 -5.7 -4.57569 | overlap 3507480 3507495 CGACGGCCTGAAAAA CCTTGATGGACAA CGTA TCGCTCACCAAGG TGGAGCCCGCGGGGG RD1_3645 3509618 - 3507993 - | sulfatase family protein RD1_3647 3510723 - 3509692 - | TRAP-type transporter, periplasmic component, putative RD1_3648 3512603 - 3510744 - | hypothetical protein RD1_3649 3512727 - 3513515 + | transcriptional regulator, putative RD1_3650 3514236 - 3513688 - | MarR family transcriptional regulator hmgA 3514405 - 3515754 + | homogentisate 1,2-dioxygenase maiA 3515760 - 3516395 + | maleylacetoacetate isomerase TERM 2923 3516584 - 3516598 + G 70 -3.4 -4.59773 | overlap 3516585 CCGGTCTGCTTGACC TGCCCG AAA CCGGCG TTTTTGCCCGTGGCA fahA 3516406 - 3517656 + | fumarylacetoacetase cybB 3518094 - 3518633 + | cytochrome b561, putative TERM 2924 3518745 - 3518689 - T 75 -6 -4.62069 | gap 2, opp_overlap 3518691 3518739 3518742, overlap 3518691 GCGCCATGCGAAAAA CCGCGATCACGTAACGCTGCCTGAAATC AAG GATTGCAA-C-GCGTTACGTGATACCTG ATGTTTCAGGTGCTT RD1_3655 3518817 - 3518695 - | hypothetical protein RD1_3656 3518842 - 3518732 - | hypothetical protein pabB 3519932 - 3518832 - | para-aminobenzoate synthase component I RD1_3658 3520255 - 3519962 - | hypothetical protein metH 3523334 - 3520620 - | methionine synthase metH 3524374 - 3523331 - | methionine synthase RD1_3661 3524660 - 3524487 - | hypothetical protein TERM 2925 3524655 - 3524675 + g 76 -9.7 -4.1347 | CGCATCAATGGCAGT GCGCACGAT GGC GTCGTGTGC TTTCTGTCCTTACCG RD1_3662 3524828 - 3525718 + | integral membrane protein DUF6, putative TERM 2926 3525815 - 3525767 - T 70 -9.6 -3.35798 | opp_overlap 3525772, overlap 3525768 ATCGGCCATGGACAA TCTGACCTTGAACCGGGCTGC-GC ATC GCAGC-GCCCGGTTCAAGATATGC TTCAGGCTTCGGTGA TERM 2927 3525814 - 3525768 - T 75 -13.1 -2.61264 | opp_overlap 3525772, overlap 3525767 TCGGCCATGGACAAT CTGACCTTGAACCGGGCTGC-GC ATC GCAGC-GCCCGGTTCAAGATATG CTTCAGGCTTCGGTG TERM 2928 3525772 - 3525810 + T 86 -14.7 -2.91199 | opp_overlap 3525768 3525767 CCATGGACAATCTGA CCTTGAACCGGGCTGC-GC ATC GCAGC-GCCCGGTTCAAGA TATGCTTCAGGCTTC RD1_3663 3526131 - 3525817 - | hypothetical protein TERM 2929 3526218 - 3526237 + r 86 -10.7 -4.07885 | TGCGCCTGTGGCAGC GCGCGTC AGGATC GACGCGC TTTTGACGGGGGCTG TERM 2930 3526242 - 3526271 + r 100 -15.8 -3.66784 | gap 1, overlap 3526268 GATCGACGCGCTTTT GACGGG-GGCTGG AAAAA CCAGCCTCCCGTC TTGTGTTGCACATGC dmsA 3528961 - 3526289 - | dimethyl sulfoxide reductase TERM 2931 3527191 - 3527201 + g 71 -8.2 -4.10007 | CCGGCACCTCCTGAC GGGC AAA GCCC TTTTCCCAGAATTCT torR 3529076 - 3529780 + | response regulator TorR, putative torS 3531921 - 3529753 - | sensor protein TorS TERM 2932 3531324 - 3531363 + g 70 -3.5 -4.67353 | gap 2, overlap 3531323 3531332 GATGCCCCCGCAACC GGGCCG--CATCCTGCGCC CGCC GCCGCAGGATGTTCAGCGC TTTTTCCATCCGTCC TERM 2933 3531563 - 3531549 - G 72 -2.1 -4.7629 | gap 1, overlap 3531541 CCAGCAAGCCAAAAA GCATCC ATGA GGA-GC GCGTCTTGGCCGCTG TERM 2934 3531971 - 3531959 - H 73 -5.5 -4.53439 | TCAAAGGCAAAGAAA TAGCG ATC CGCCA ATGCATCGAGTGCCG torT 3532511 - 3533521 + | periplasmic sensory protein associated with the TorRS two-component regulatory system RD1_3669 3534523 - 3533558 - | hypothetical protein RD1_3670 3535996 - 3534539 - | dihydrolipoamide dehydrogenase grxC 3536300 - 3536028 - | glutaredoxin 3 TERM 2935 3536141 - 3536167 + g 74 -10.9 -3.53091 | gap 1, overlap 3536146 AGATTTGCGGCACGG TGGTGCGCCCGC CGGC GCGGGCG-ATCA TTTCGCCGCGCCGCT RD1_3672 3536852 - 3536352 - | hypothetical protein TERM 2936 3536870 - 3536881 + H 73 -5.8 -4.46112 | TGTGTTTCCTTTCTT GACC GAGT GGTC TTTATTTGGGTAAAG RD1_3673 3536990 - 3537586 + | TetR family transcriptional regulator RD1_3674 3537846 - 3538889 + | pyridoxal-phosphate dependent enzyme RD1_3675 3541917 - 3538900 - | hypothetical protein TERM 2937 3539033 - 3539044 + g 70 -3.6 -4.62069 | overlap 3539010 ATCAGGATGCGATGA TCGC GCAT GCGG TTTTTGACATAGGCG hutF 3543423 - 3542059 - | N-formimino-L-glutamate deiminase TERM 2938 3542113 - 3542134 + g 89 -10.1 -4.61231 | gap 1 ATCTGCGACGATCTT CGCGC-GCGC AAC GTGCTGCGCG TTTTTCACCATATGC hutI 3543499 - 3544692 + | imidazolonepropionase TERM 2939 3544827 - 3544862 + G 70 -10.4 -3.54424 | opp_overlap 3544798 3544797 3544821 3544820 3544858 GTGGCAAAGGCCGCC GCCGGTGATGACGC GGTCTATG GCGTGAACACCGGC TTTGGCAAGCTGGCC hutH 3544689 - 3546230 + | histidine ammonia-lyase hutG 3546227 - 3547021 + | N-formylglutamate amidohydrolase, putative TERM 2940 3547589 - 3547618 + G 70 -4.9 -4.57063 | GCACAGGACAAGGTG CCGTGCTGGACAT CGCG ATGTACGACGCGG TTTATTCTCTTTTGA TERM 2941 3548026 - 3547995 - g 93 -15.1 -3.71378 | opp_overlap 3548016, overlap 3547979 3547976 GAGCGCACATGCAAA GGCGCGCACCCTC GTTCAG GACGGCGCGCGCC CACTAGTGGGGCAGC RD1_3680 3547018 - 3548184 + | CAIB/BAIF family protein TERM 2942 3548620 - 3548602 - g 77 -8 -4.34402 | CGGCCGATATGAAAA CCCGCGCA ACC CGCGAGGG GGATGGATGGCACCT acdA 3548181 - 3549326 + | acyl-CoA dehydrogenase hutU 3549338 - 3551008 + | urocanate hydratase TERM 2943 3551963 - 3551941 - g 81 -4.7 -4.89339 | overlap 3551911 AACGATGTACAAAAA GGCATGGCC AACAA GACCTCGCC GCATATCGACCTGCC van 3551026 - 3552066 + | vanillate O-demethylase oxygenase, putative TERM 2944 3552589 - 3552604 + G 71 -6.1 -4.3898 | opp_overlap 3552569 CTTGCCCACGCGTTG GCTGG CCGAAA CCAGC TTTTATCCCAATGAT TERM 2945 3552752 - 3552763 + G 71 -7.2 -4.22346 | opp_overlap 3552744, overlap 3552749 3552755 AATGAGAGCGGCACC CGCC GCCG GGCG TTTTCCCTGCGTTTG RD1_3684 3552104 - 3552907 + | phytanoyl-CoA dioxygenase family protein, putative RD1_3685 3553129 - 3553001 - | hypothetical protein TERM 2946 3553167 - 3553115 - Gg 100 -17.8 -3.66803 | opp_overlap 3553117 3553118, overlap 3553117 3553118 3553120 GCGCAAGACGGCAAA CATCAGATGCGCCAATCCGGACGG TAAAC CCGTTCAGACTGGCGCATCTGGTT TTGCAAGCTCGCGTG RD1_3686 3553028 - 3553141 + | hypothetical protein TERM 2947 3553117 - 3553165 + gT 100 -20.4 -4.09685 | opp_overlap 3553115 3553117 3553118 3553120, overlap 3553118 GCAAGACGGCAAACA TCAGATGCGCCAATCCGGACGG TAAAC CCGTTCAGACTGGCGCATCTGG TTTTGCAAGCTCGCG TERM 2948 3553165 - 3553117 - GT 100 -20.4 -3.41302 | opp_overlap 3553117 3553118, overlap 3553115 3553118 3553120 GCAAGACGGCAAACA TCAGATGCGCCAATCCGGACGG TAAAC CCGTTCAGACTGGCGCATCTGG TTTTGCAAGCTCGCG TERM 2949 3553118 - 3553164 + gT 100 -21.7 -3.05597 | opp_overlap 3553117 3553115 3553118 3553120, overlap 3553117 CAAGACGGCAAACAT CAGATGCGCCAATCCGGACGG TAAAC CCGTTCAGACTGGCGCATCTG GTTTTGCAAGCTCGC TERM 2950 3553164 - 3553118 - GT 100 -23.9 -2.64299 | opp_overlap 3553118 3553117, overlap 3553117 3553115 3553120 CAAGACGGCAAACAT CAGATGCGCCAATCCGGACGG TAAAC CCGTTCAGACTGGCGCATCTG GTTTTGCAAGCTCGC TERM 2951 3553162 - 3553120 - GT 100 -20.7 -2.85565 | opp_overlap 3553118 3553117, overlap 3553118 3553117 3553115 AGACGGCAAACATCA GATGCGCCAATCCGGACGG TAAAC CCGTTCAGACTGGCGCATC TGGTTTTGCAAGCTC RD1_3687 3553790 - 3553203 - | cytochrome c family protein sndH 3554956 - 3553787 - | L-sorbosone dehydrogenase, putative TERM 2952 3555186 - 3555208 + rH 93 -9.1 -4.77438 | gap 1, overlap 3555188 TGGTATGGTGTGAGC GC-CCCGCGC GAGG GCGTGGGTGC TTTTTGATAATACCT TERM 2953 3555188 - 3555205 + rH 71 -10.5 -3.29543 | overlap 3555186 GTATGGTGTGAGCGC CCCGCGC GAGG GCGTGGG TGCTTTTTGATAATA radC 3556247 - 3555342 - | DNA repair protein RadC TERM 2954 3555662 - 3555641 - GH 75 -2.2 -4.99043 | overlap 3555643 GGTCCAGAAACAAAA CCCGAAAC TGTTCC GTCTCGCG ATGCGCCATCGTCGT RD1_3691 3556240 - 3556341 + | hypothetical protein RD1_3692 3556492 - 3556349 - | hypothetical protein ilvD 3556550 - 3558283 + | dihydroxy-acid dehydratase TERM 2955 3558391 - 3558366 - g 70 -10.3 -3.45737 | overlap 3558354 3558368 CAACGACGAGGACAA GATCGCCGGGC GCCT GCACGGCGAGC AGATCGAGCCTGAAG TERM 2956 3558389 - 3558368 - g 72 -11.5 -3.29541 | overlap 3558354 3558366 ACGACGAGGACAAGA TCGCCGGGC GCCT GCACGGCGA GCAGATCGAGCCTGA RD1_3694 3558346 - 3558651 + | hypothetical protein TERM 2957 3559602 - 3559614 + G 80 -10.5 -4.13767 | opp_overlap 3559574 GAAGAAGGTCTCACC CCCGC CGA GCGGG TTTTCGGGTGGAACA RD1_3695 3558723 - 3560123 + | hypothetical protein TERM 2958 3561410 - 3561400 - g 80 -3.2 -5.11937 | AAGAAGGCCAAAAAA TCCC CCG AGGA CTATGCAGGTTTCTG htpG 3560335 - 3562200 + | heat shock protein 90 TERM 2959 3562270 - 3562249 - f 85 -11.5 -3.92659 | opp_overlap 3562249 GTTTTAAAATGCAAA CCGACTGGC GTTT GCCCGTCGG CCGGTTGTTCATGTG TERM 2960 3562644 - 3562668 + G 93 -8.4 -5.0538 | opp_overlap 3562643 3562647, overlap 3562646 TCGTGATCAGCAAAG CAAGGGGCGG TTTGC CCGCCCCCGG TTTTTTCGACTGCGC TERM 2961 3562665 - 3562647 - g 82 -13.1 -3.58162 | opp_overlap 3562646 3562644, overlap 3562643 TGATCAGCAAAGCAA GGGGCGG TTTGC CCGCCCC CGGTTTTTTCGACTG RD1_3697 3562295 - 3562792 + | hypothetical protein TERM 2962 3562886 - 3562901 + F 73 -5.4 -4.56597 | overlap 3562887 CGTTTCACTTCGCCC TCTGTC AGCG GACAGG TTTTTCAGAAAAACG TERM 2963 3562927 - 3562915 - f 74 -4.7 -4.82901 | opp_overlap 3562920 3562921 GGTTTTTCAGAAAAA CGCGC TTT GCCCG CAAGGGCAGGTTTCT RD1_3698 3563000 - 3565516 + | sodium/hydrogen exchanger family protein TERM 2964 3566575 - 3566591 + G 81 -5.1 -4.94992 | opp_overlap 3566574 3566575 TGCCTGCGGTCAAAC CGGCA CCATTCA TGCCG TTTTTGTGAGTTTCG RD1_3699 3565691 - 3566935 + | hypothetical protein RD1_3700 3570063 - 3567559 - | GGDEF/EAL domain-containing protein RD1_3701 3570142 - 3570522 + | hypothetical protein TERM 2965 3570700 - 3570727 + G 76 -14 -3.06696 | opp_overlap 3570699, overlap 3570699 GTTCAGGCCACGAAC CCGCGCACGCCG GGTT CGTCGGGCGCGG TATGTTGACGGCAGC RD1_3702 3570519 - 3572144 + | dihydroxyacetone kinase TERM 2966 3572246 - 3572234 - f 90 -6.2 -5.21709 | TCTGACACCAAAAAA CCGC GCAAA GCGG CAGAAGAACCGGGAG TERM 2967 3573303 - 3573325 + G 76 -7.1 -4.56597 | gap 1 TTACCTCTGGCATAC GCC-TTTTGG TGAA CCAAAACGGC TTTTTACGCGCAACG RD1_3703 3572461 - 3573588 + | oxidoreductase, putative TERM 2968 3574319 - 3574294 - g 72 -11.7 -3.28712 | opp_overlap 3574294, overlap 3574269 CGGGGCCGGTGACAA CGCCGCCGCCG CGAT CGGCGCGGGCG TTGTCACGGAAGGCT TERM 2969 3574294 - 3574319 + G 72 -11.7 -3.28791 | opp_overlap 3574269 3574294 CGGGGCCGGTGACAA CGCCGCCGCCG CGAT CGGCGCGGGCG TTGTCACGGAAGGCT xylB 3573593 - 3575029 + | xylulose kinase TERM 2970 3575167 - 3575184 + G 71 -6.9 -4.18018 | TCACTTGCGGTTTGC CTGCGCC TATT GGCACAG TTTTGCATGGCCGGG TERM 2971 3575433 - 3575415 - g 81 -4.5 -5.00884 | overlap 3575417 ATTTCGCCGAAAAAA TGGACGC AACAG GCGTCAA ACTGCTGTGGGGAAC TERM 2972 3576142 - 3576130 - g 70 -10.5 -3.53012 | CGCTGCGGGGTTAAA GGCCG CTG CGGCC ATGCTGGAGGATGGC xylA 3575033 - 3576334 + | xylose isomerase RD1_3706 3578253 - 3576454 - | monooxygenase protein, putative TERM 2973 3577468 - 3577478 + g 71 -6.8 -4.2717 | overlap 3577460 3577469 GTCATAGCTGGCCGA CCTG GCC CAGG TTTTGGTCCAGTAGT RD1_3707 3578566 - 3578399 - | hypothetical protein RD1_3708 3579810 - 3578656 - | hypothetical protein RD1_3709 3581825 - 3579846 - | hypothetical protein TERM 2974 3580177 - 3580154 - G 83 -3 -5.24551 | gap 1, overlap 3580156 3580166 GGAAACCAACAAAAA TGGCGCAAGGC ACA GCCA-GCGTCA AGATCGTGCGCAGGC RD1_3710 3582184 - 3582714 + | hypothetical protein RD1_3712 3582887 - 3582786 - | hypothetical protein RD1_3711 3582711 - 3582866 + | hypothetical protein TERM 2975 3582951 - 3582975 + GH 71 -10.6 -3.2048 | overlap 3582971 GATCACGACACGTAT GAGTGGGCCG CCGCA CGGCCCGCAC TTGATGCGCTTTCAC TERM 2976 3583437 - 3583419 - gH 70 -3.1 -4.58585 | gap 1, overlap 3583420 CATGGAAAGAACAAA TCC-GACC AGAT GGCCAGGA TCATCAACCACTACA mpgP 3582882 - 3583664 + | mannosyl-3-phosphoglycerate phosphatase RD1_3714 3583836 - 3584900 + | hypothetical protein gtfA 3586642 - 3584915 - | sucrose phosphorylase, putative TERM 2977 3586866 - 3586854 - R 71 -4.7 -4.60889 | overlap 3586844 AAGCACCGTCAAAAA CGGCC GTA GGGCG AGACACCGTTCACAT gnl 3587779 - 3586847 - | gluconolactonase, putative RD1_3717 3588503 - 3587739 - | hypothetical protein RD1_3718 3589435 - 3588500 - | sugar ABC transporter, permease protein, putative RD1_3719 3590349 - 3589435 - | sugar ABC transporter, permease protein, putative TERM 2978 3590420 - 3590380 - R 100 -13.3 -4.18018 | gap 1, overlap 3590383 3590400 CCGGTTCAGCTAAAA CAG-GCCCGGGGCGCACA AAACAG CGCGCGCCCCGAACGCTG GGAGGTTACTGCCAG TERM 2979 3590416 - 3590383 - R 79 -13.8 -2.81208 | overlap 3590380 3590400 GTTCAGCTAAAACAG GCCCGGGGCGCACA AAACAG CGCGCGCCCCGAAC GCTGGGAGGTTACTG TERM 2980 3590420 - 3590400 - R 84 -8.9 -4.36914 | overlap 3590383 3590380 CCGGGGCGCACAAAA CAGCGCGCG CCC CGAACGCTG GGAGGTTACTGCCAG RD1_3720 3591754 - 3590426 - | sugar ABC transporter, periplasmic binding protein, putative algS 3592872 - 3591784 - | alginate ABC transporter, ATP-binding protein RD1_3722 3594010 - 3592970 - | LacI family transcription regulator TERM 2981 3593412 - 3593390 - G 80 -10.4 -4.07885 | CATGGCCTGCGAAAA GCCGCGCCGC CGC GCCGCGCCGC GTGTCCACGCGTCAT RD1_3723 3594763 - 3594623 - | hypothetical protein RD1_3724 3597630 - 3595018 - | hypothetical protein TERM 2982 3597293 - 3597280 - G 72 -2.3 -4.77165 | opp_overlap 3597286 3597288, overlap 3597281 3597282 CTCGGTATAAGAAAA CTCGC TCGC GCCAG GCCCGGCGGCGTTTG TERM 2983 3598742 - 3598752 + G 81 -8.2 -4.64861 | AAACGAAACGCCGCT CGCG GGA CGCG TTTGTTTTGAAGACG TERM 2984 3598998 - 3599010 + G 76 -6.3 -4.59773 | ATTGGTTATGCCGAC CAACA ACC TGTTG TTTTTGCGGGTACGG RD1_3725 3597762 - 3599489 + | toxin secretion ABC transporter, ATP binding protein, putative RD1_3726 3599489 - 3601579 + | toxin secretion ABC transporter, ATP binding component, putative TERM 2985 3601920 - 3601910 - g 70 -3.2 -4.68103 | opp_overlap 3601913 CCAACTCGAACAAAA CCTG CGC CAAG AGCTTCTGGCGATTG lktD 3601710 - 3602897 + | leukotoxin secretion protein D, putative TERM 2986 3604175 - 3604154 - g 75 -2.9 -4.99035 | overlap 3604155 GGAGGTACACAAAAA TCGGATCGT GAAG ATGATCCGG CTCGCCTTTGGCGCC RD1_3730 3603081 - 3604406 + | ABC1 family protein RD1_3731 3604574 - 3605338 + | hypothetical protein TERM 2987 3605373 - 3605359 - g 90 -4.9 -5.40072 | overlap 3605360 CGCGCGGCAAAAAAA CGCGC CGGAC ACGCG CAAAACCGCCGAATT RD1_3732 3605323 - 3605457 + | hypothetical protein TERM 2988 3606743 - 3606719 - g 71 -6.4 -4.21989 | gap 1, opp_overlap 3606738 TATAAGTCCAACAAA CGCAGCCTGAT CCGC ATCGGGC-GCG TGCTCGCCTTTGGGA RD1_3733 3605495 - 3607777 + | mechanosensitive ion channel protein, putative TERM 2989 3607815 - 3607871 + T 70 -9.8 -3.38046 | gap 2, opp_overlap 3607826, overlap 3607829 AAGAACCCGGCACAT CATCTATCACATAACGC-GT-TGAAATC TCT GATTTCAGGCAGCGTTATATGATCGGTG TATTTCGCATGACGC RD1_3734 3611009 - 3607914 - | hypothetical protein TERM 2990 3608101 - 3608082 - G 70 -4.2 -4.45544 | gap 1, overlap 3608083 3608084 CCGCACCAATGAAAA TGCCGCAGC CGG GC-GCTGCA AGCGGATGAAATCGG TERM 2991 3609263 - 3609277 + g 74 -11.4 -3.53012 | TCGGCAGCCTCGGCC CGGTGC GCG GCACCG TTTCGGACGCAAGCG TERM 2992 3609849 - 3609831 - G 74 -11.6 -3.53012 | CGCCGGGGTGGGAAA CGCGGGCC AGC GGGCCGCG GCACCGGGCGCAGCA TERM 2993 3609944 - 3609906 - G 78 -10 -3.96148 | overlap 3609908 3609911 CGGTGCGACGACAAA CATGAGCGGGTCGCCGGG GGC CCCCTCGACCCGCGCCAG CACAGCATCCGCACG TERM 2994 3609943 - 3609908 - G 77 -11.8 -3.57406 | gap 1, overlap 3609906 3609911 GTGCGACGACAAACA TGA-GCGGGTCGCCGGG GGC CCCCTCGACCCGCGCCA GCACAGCATCCGCAC TERM 2995 3609939 - 3609911 - G 81 -15.9 -2.91255 | overlap 3609908 3609906 CGACGACAAACATGA GCGGGTCGCCGGG GGC CCCCTCGACCCGC GCCAGCACAGCATCC RD1_3735 3615001 - 3611015 - | hypothetical protein TERM 2996 3612282 - 3612303 + g 79 -12.9 -3.53444 | opp_overlap 3612273, overlap 3612295 TCAATACGGCCCGGT CGCGCCCCG GACG CGGGGCGGG TTTCAACACGGATGC TERM 2997 3613468 - 3613457 - G 74 -3.6 -4.7254 | ATTGGGGATCAAAAA CCCG GTAT CGGA CGCGGATTGGCGCGG RD1_3736 3622378 - 3615005 - | hypothetical protein TERM 2998 3617877 - 3617856 - G 71 -5.7 -4.36914 | opp_overlap 3617859 3617869, overlap 3617841 3617857 CCCCGCGCGATAAAA CCACCCGCG GGGG CGCCGGTGT TGCCACCCGGCGTTT TERM 2999 3620821 - 3620792 - G 100 -9.3 -4.88222 | gap 1, overlap 3620784 3620794 ATCAAAACGGAAAAA CCCGACGA-GCGAT GTC ACCGCATCGTCCGG CGTGCGCGCCTCGAT TERM 3000 3622259 - 3622227 - G 79 -8.4 -4.57837 | gap 1, opp_overlap 3622250 3622255, overlap 3622228 3622229 ACATCCCCCGAAAAA CGCCCGATGCCACGG ATGA CCATGCCACCGGG-G CCGGTCGCGGTCTCG TERM 3001 3622369 - 3622351 - G 70 -3.8 -4.59109 | TATAGGGGCGAAAAA GATCAACC AAG GATAGATC AAAAGGCATCAGTCA rbsK 3623659 - 3622757 - | ribokinase fucU 3624106 - 3623660 - | fucose operon FucU protein, putative RD1_3739 3625229 - 3624192 - | putative sugar ABC transporter, ATP-binding protein RD1_3740 3625447 - 3627078 + | solute-binding protein, putative TERM 3002 3627121 - 3627091 - f 77 -8.2 -4.07885 | opp_overlap 3627096, overlap 3627092 3627096 TAGTCCGGTTGAAAA GGGAAGGCGCGG TTTGTTT CCGCGCCTTCTG CCCTGATCAGGCAGC TERM 3003 3627120 - 3627092 - f 76 -11.7 -3.04517 | opp_overlap 3627096, overlap 3627091 3627096 AGTCCGGTTGAAAAG GGAAGGCGCGG TTTGTTT CCGCGCCTTCT GCCCTGATCAGGCAG TERM 3004 3627096 - 3627116 + F 75 -11.1 -3.34043 | opp_overlap 3627092 3627091 3627096 CGGTTGAAAAGGGAA GGCGCGG TTTGTTT CCGCGCC TTCTGCCCTGATCAG TERM 3005 3627116 - 3627096 - f 75 -11.1 -3.36823 | opp_overlap 3627096, overlap 3627092 3627091 CGGTTGAAAAGGGAA GGCGCGG TTTGTTT CCGCGCC TTCTGCCCTGATCAG RD1_3741 3627490 - 3627969 + | YHS domain-containing protein TERM 3006 3628040 - 3628007 - f 91 -17.5 -2.78596 | opp_overlap 3628013, overlap 3628013 GATCTTGTCAGGACA TCGAAAGGGCGCGCA CCTC TGCGCGCCCTTTCAC GCTCTCGGTCATATA TERM 3007 3628034 - 3628013 - f 100 -17.3 -3.727 | opp_overlap 3628013, overlap 3628007 GTCAGGACATCGAAA GGGCGCGCA CCTC TGCGCGCCC TTTCACGCTCTCGGT TERM 3008 3628013 - 3628034 + F 100 -17.3 -3.5944 | opp_overlap 3628013 3628007 GTCAGGACATCGAAA GGGCGCGCA CCTC TGCGCGCCC TTTCACGCTCTCGGT RD1_3742 3628484 - 3629461 + | sugar ABC transporter, permease protein, putative RD1_3743 3629497 - 3630372 + | sugar ABC transporter, permease protein, putative RD1_3744 3632718 - 3630601 - | sulfatase domain-containing protein RD1_3746 3632995 - 3632699 - | hypothetical protein RD1_3747 3633139 - 3633011 - | hypothetical protein RD1_3748 3633964 - 3633182 - | hypothetical protein RD1_3749 3635463 - 3634009 - | hypothetical protein RD1_3750 3636390 - 3635617 - | hypothetical protein TERM 3009 3635990 - 3635952 - G 73 -10.4 -3.57615 | opp_overlap 3635983, overlap 3635953 TGAATACCCCCCAAA GCCCC-CAGTCCGGGCTC GCCGT GAACCCG-ACTGCGGGAC CAAGCCCCCATTTCT RD1_3751 3636637 - 3637242 + | transcriptional regulator, putative RD1_3752 3637498 - 3637400 - | hypothetical protein RD1_3753 3638467 - 3637550 - | homocysteine S-methyltransferase, putative RD1_3754 3638589 - 3638768 + | hypothetical protein RD1_3755 3639818 - 3638814 - | oxidoreductase, putative TERM 3010 3639467 - 3639495 + g 78 -4.3 -4.7497 | opp_overlap 3639460 CGATGTAATCCGTGC CGAGACGGCGCAG GGT CTGGGCCAACGCG TTTTTGATCGATGCC TERM 3011 3639851 - 3639881 + r 77 -11 -3.48593 | opp_overlap 3639844 3639852 3639870, overlap 3639852 GGTTCAAAGGTATGA AGCGGGCGCAGC CGCAAAA GCCGCGCCCGCA TTGTGTCAGCGGGTA TERM 3012 3639852 - 3639880 + r 81 -14.5 -2.68942 | opp_overlap 3639852 3639844 3639870, overlap 3639851 GTTCAAAGGTATGAA GCGGGCGCAGC CGCAAAA GCCGCGCCCGC ATTGTGTCAGCGGGT TERM 3013 3639880 - 3639852 - R 100 -17.4 -3.25088 | opp_overlap 3639851 3639852, overlap 3639844 3639870 GTTCAAAGGTATGAA GCGGGCGCAGCC GCAAA AGCCGCGCCCGC ATTGTGTCAGCGGGT RD1_3756 3640690 - 3639887 - | short chain dehydrogenase, putative RD1_3758 3641192 - 3640782 - | hypothetical protein TERM 3014 3641158 - 3641172 + g 95 -3.4 -5.62288 | overlap 3641159 3641160 TTTCCCATCTTTGTT TGGCGC GCT GCGCAG TTTTTCTTTTCTTGA TERM 3015 3641269 - 3641232 - H 76 -3 -5.055 | gap 3, opp_overlap 3641232 3641234, overlap 3641233 3641234 TGAACTGCGAAAAAA TCT-CTGCAACCCATCTGA TAT TCAGATGGGT-A-AGTAGA TGCTTGATAATGTGA TERM 3016 3641492 - 3641443 - g 70 -9.9 -3.53811 | gap 1, opp_overlap 3641444, overlap 3641444 CGCACGGGCCGCAAA CCCGTGCGCACCCCAGCGGGTGAC GCG ATCAT-CGCAGAGGCGCGCACGAT CCTTTCGCGGGTTGA TERM 3017 3641491 - 3641444 - g 73 -13.4 -2.72144 | gap 1, opp_overlap 3641444, overlap 3641443 GCACGGGCCGCAAAC CCGTGCGCACCCCAGCGGGTGAC GCG ATCAT-CGCAGAGGCGCGCACGA TCCTTTCGCGGGTTG TERM 3018 3641529 - 3641518 - g 71 -7.2 -4.21194 | opp_overlap 3641518 3641519, overlap 3641519 GTTGATCACCTAAAA GCGC GGGC GCGC GGTATTTCGGCGGGT RD1_3759 3641269 - 3642165 + | LysR family transcriptional regulator xylB 3643788 - 3642301 - | xylulose kinase, putative TERM 3019 3643171 - 3643161 - G 70 -4.6 -4.46926 | opp_overlap 3643161, overlap 3643163 CATTTGACCACAAAA GCCG GGG CAGC TTGTCCAGTGGTAGG TERM 3020 3643254 - 3643236 - G 80 -10.2 -4.03078 | TGACCACATCATAAA GCGGTGAG AAA CTCGCCGC CGTGAAATGGTCAAT RD1_3761 3644015 - 3643824 - | hypothetical protein TERM 3021 3643990 - 3643960 - G 76 -5.3 -4.62069 | gap 1, opp_overlap 3643965, overlap 3643961 TGTGCATGGCAAAAA CGCGCGCTTGCGCC GTGC GTCACAGGCG-GCG AGCTGATCTGGTCTT RD1_3762 3644056 - 3645084 + | oxidoreductase, putative RD1_3763 3645092 - 3645934 + | hypothetical protein rbsK 3646758 - 3645919 - | ribokinase, putative xylA 3647741 - 3646755 - | xylose isomerase, putative RD1_3766 3648195 - 3647845 - | hypothetical protein TERM 3022 3648138 - 3648148 + g 72 -2.4 -4.86731 | CCGCAAGGCGCACCA CCCG ACC CGTG TTTTGTTTGAAACCA RD1_3767 3649466 - 3648192 - | hypothetical protein TERM 3023 3649361 - 3649381 + g 71 -6.8 -4.28762 | gap 1, overlap 3649376 CCCGACCGGGCGTGC GCCGATCCG GCTG CGGG-CGGC TTTTCATCGCCTTGT TERM 3024 3649593 - 3649572 - R 71 -7.9 -4.03413 | ATGCGCGCAGAGAAA CCGGGCATC GCAC GACGCCCCG ACCTGCGCCCGGCAG RD1_3768 3650603 - 3649632 - | hypothetical protein TERM 3025 3650415 - 3650405 - G 77 -3.2 -4.89339 | AACCATGCACAAAAA GCAA AAC CTGC TTGTAGTTCGAATTC RD1_3769 3651236 - 3650820 - | universal stress family protein, putative RD1_3770 3651609 - 3652709 + | solute-binding family 7 protein TERM 3026 3653221 - 3653205 - f 83 -10.1 -4.07568 | overlap 3653206 GTCCTTCGCCGAAAA GTCCGCG CAA CGCAGAC TGGACCGCGCCACGG TERM 3027 3653284 - 3653252 - f 72 -12 -2.62184 | gap 2, opp_overlap 3653248 3653245, overlap 3653206 3653271 GCGGTGTCGAGACGA GCGCC-GC-GCGCATC GAA GAGGCGCAGCAGGCGC TGGATGCTGTTGGGG RD1_3771 3653410 - 3654111 + | TRAP transporter, DctQ-like membrane protein, putative RD1_3772 3654115 - 3655470 + | TRAP dicarboxylate transporter, DctM subunit, putative TERM 3028 3655485 - 3655505 + F 100 -16.1 -4.34402 | opp_overlap 3655485 ACGGTGCAGACAAAA CGGCGGCCC CAC GGGTCGCCG TTTTCATCTGAGGCG TERM 3029 3655505 - 3655485 - f 100 -13.9 -4.52857 | opp_overlap 3655485 ACGGTGCAGACAAAA CGGCGGCCC CAC GGGTCGCCG TTTTCATCTGAGGCG pcaC 3655601 - 3655984 + | 4-carboxymuconolactone decarboxylase pcaH 3655981 - 3656703 + | protocatechuate 3,4-dioxygenase, beta subunit pcaG 3656706 - 3657293 + | protocatechuate 3,4-dioxygenase, alpha subunit glk 3658244 - 3657297 - | glucokinase, putative TERM 3030 3657891 - 3657863 - G 71 -8.8 -3.79906 | CGAGGTTCACAACAA GGCGCGCGTC-CCC TTT GGGTGTCGCG-GCC CCCTTGCGCAGGCGG RD1_3777 3659005 - 3658388 - | hypothetical protein TERM 3031 3658574 - 3658554 - G 71 -6.2 -4.37658 | gap 1 AACTGGCGGACAAAA GGCAGGATC GCCA GATC-TGCC AGCGTTGCCCGGCCA TERM 3032 3659011 - 3658996 - G 70 -10.4 -3.47516 | overlap 3658994 GAAAGGAATAGAACA CAGGCG TCAT CGCCTG CAATCTGCCAGCTTA hemA 3660284 - 3659061 - | 5-aminolevulinate synthase RD1_3779 3660358 - 3660242 - | hypothetical protein RD1_3780 3660914 - 3660516 - | hypothetical protein TERM 3033 3660736 - 3660698 - G 74 -11 -3.55071 | TGACATCGCGGTAAA TCAGCTCAAGCAGCAC CGCAGAT GAGCTGCTGGAGCCGA TAAGCTCATGCAAAA RD1_3781 3662176 - 3660914 - | hypothetical protein TERM 3034 3661130 - 3661108 - G 77 -4.1 -4.9218 | gap 1, opp_overlap 3661119, overlap 3661111 TATCGAGCACAAAAA CGACGCCCAA TGCC TCGAGCG-CG CGGCTTGTGTTGTCC RD1_3782 3663214 - 3662207 - | AraC family transcriptional regulator RD1_3783 3664127 - 3663360 - | hypothetical protein RD1_3784 3664774 - 3664124 - | putative aldolase TERM 3035 3664247 - 3664270 + g 71 -8.2 -4.07568 | gap 1 CTCAAGCTCTTCGAT GGCGTTGCAGG CCG CCT-CAACGTC TTTTCCAGCCACCAC RD1_3785 3666039 - 3664771 - | hypothetical protein TERM 3036 3664823 - 3664811 - G 71 -5.5 -4.41348 | GCCCTGTCAAAGAAA TCGGC CGC GCCAA AGTTCCCCGATTTCA TERM 3037 3665821 - 3665803 - G 81 -5.8 -4.84359 | overlap 3665804 3665805 GTATTTCCAGAAAAA CCGCCCCG CCC CGGCTCGG CGCAGCCACTCAAGT mmsB 3666965 - 3666063 - | 3-hydroxyisobutyrate dehydrogenase, putative gntR 3667743 - 3667048 - | GntR family transcriptional regulator RD1_3788 3668735 - 3667716 - | NADH-dependent dyhydrogenase TERM 3038 3667985 - 3668019 + gr 72 -12.1 -2.55544 | opp_overlap 3667991, overlap 3667988 3667989 CCCCCGCCGTCCCCT CAATCAGCGCCTCAC CCATC GTGCGGCGCAGGTTG TCACTTGCGTGATCA TERM 3039 3668760 - 3668748 - R 77 -7.7 -4.31433 | CATTGTGACAACAAA CGGTT TTG AACCG CGCGCGCTGCCTCCT leuB 3669820 - 3668732 - | 3-isopropylmalate dehydrogenase TERM 3040 3669245 - 3669221 - G 78 -2.7 -5.03145 | opp_overlap 3669229 3669230, overlap 3669238 CAAGGCGCGAAAAAA GGCGAAGGCGC GAA ACACGTTTGCC TTGTCCACACAGGTC RD1_3790 3669957 - 3670247 + | hypothetical protein TERM 3041 3670288 - 3670308 + G 72 -2.3 -4.82128 | opp_overlap 3670276 3670274 3670288 3670290, overlap 3670290 ATATGCGGATCGAAA CAGCCGCAC ACG GCGCGACAG TTTTATCTTTGATGA RD1_3791 3670244 - 3671041 + | metallo-beta-lactamase family protein, putative ureD 3671168 - 3671989 + | urease accessory protein UreD ureA 3671993 - 3672295 + | urease gamma subunit TERM 3042 3672406 - 3672388 - g 74 -11.7 -3.54424 | GCTGATGGTGGCAAA CACCGGG GATCG CCCGGTG CAGGTCGGCAGCCAC ureB 3672305 - 3672610 + | urease beta subunit TERM 3043 3673270 - 3673247 - g 71 -6.6 -4.15044 | TGCTGGTCGAAGAAA CCACTGCCGT CTGC ATGGCCGTGG ATACGCTCTCGCTGG RD1_3797 3672643 - 3673464 + | cyclase, putative TERM 3044 3673495 - 3673518 + G 80 -14.6 -3.02144 | gap 1, opp_overlap 3673494 TCATCTCTGACGAAG CGGCCAGC-CC TGA GGTGCTGGCCG TGTTCGACGACATCC RD1_3798 3673464 - 3673859 + | hypothetical protein TERM 3045 3673950 - 3673923 - f 100 -15.5 -3.53012 | opp_overlap 3673934, overlap 3673924 GGCGTCGCGCTGAAA GCGCCCGCCCG GGGGGG CGGTCGGGCGC TGCCCGGCGGTGCCG TERM 3046 3673975 - 3673924 - f 86 -15.6 -2.71712 | gap 1, opp_overlap 3673934, overlap 3673923 GCGTCGCGCTGAAAG CGCCCGCCCGGGGGGGCGGTCGGGC GCT GCCCGGCGGTGCCGCCGGACGGG-G TCACCACCAGCCACG TERM 3047 3675506 - 3675492 - g 77 -7.8 -4.34759 | GACAAGATGAAGAAA CAGCGC GGC GCACTG ACCGAGGAAACAGGC ureC 3674337 - 3676046 + | urease subunit alpha RD1_3801 3676043 - 3676585 + | hypothetical protein ureE 3676713 - 3677204 + | urease accessory protein UreE ureF 3677167 - 3677835 + | urease accessory protein UreF ureG 3677832 - 3678500 + | urease accessory protein UreG flhA 3679622 - 3678510 - | glutathione-dependent formaldehyde dehydrogenase RD1_3807 3680697 - 3679675 - | LacI family transcription regulator TERM 3048 3680774 - 3680749 - H 84 -13.4 -3.05463 | ACCTCGCTCATGTAA GCGCTTGCAT TACGTC ATGCAAGCGC TTACACATCTGCATA hisD 3680861 - 3682168 + | histidinol dehydrogenase TERM 3049 3682718 - 3682730 + G 81 -4.7 -5.00616 | GCATCACCGCGAACG CCGTG GCA CCCGG TTTTTTCCGCACGGA gno 3682174 - 3682926 + | gluconate 5-dehydrogenase TERM 3050 3683410 - 3683452 + G 88 -14 -3.60792 | opp_overlap 3683405 ATCTCAAGGATGCCC GCTGCGCCGTCATCGGCGGC GGC GCCATTGGTGTTGGCGCGGC TTTGGCGCTTGCGGC gutB 3682923 - 3683930 + | sorbitol dehydrogenase, putative TERM 3051 3683967 - 3683953 - f 70 -2.8 -4.74103 | CCCGCAACCGAAAAA GGACAT AGC ATGTAC AAGAAGATCATCGTC RD1_3811 3683962 - 3684366 + | universal stress family protein, putative RD1_3812 3684432 - 3684938 + | decarboxylase, putative bcpC 3684935 - 3685489 + | 3-phosphonopyruvate decarboxylase, putative TERM 3052 3685521 - 3685548 + G 76 -14.9 -2.55722 | gap 1, overlap 3685518 3685504 ATCCACAGCTATGAC GACGCCCGCCGC ATCGC GCGGCGG-CGTC TGCCTTGGATGGTCT lldD 3685494 - 3686597 + | L-lactate dehydrogenase (cytochrome), putative bluB 3687375 - 3686752 - | cobalamin biosynthesis protein BluB TERM 3053 3687344 - 3687308 - G 71 -7.9 -4.08216 | GGATCGTTGCGAAAA TGCCGGACATCGCGTCG CCA CGTCAGGATATCCTGCA ACGCTTGCCGATGTG cobF 3688179 - 3687436 - | precorrin 6A synthase TERM 3054 3687491 - 3687504 + g 85 -9.5 -4.59109 | CAGCCATGATCCGCG CGGGC CTTG GCCCG TTTTTCCACGATCTG cobA 3688907 - 3688188 - | uroporphyrin-III C-methyltransferase TERM 3055 3688722 - 3688736 + g 79 -12.8 -3.53811 | CTGTTGGTTCGGTGA CGGGCG GCC CGCCCG TTTGCCCACGCTCAC cobB 3690220 - 3688904 - | cobyrinic acid a,c-diamide synthase TERM 3056 3689502 - 3689456 - G 71 -5.7 -4.42238 | gap 2, opp_overlap 3689491, overlap 3689457 GTAGGTGAACGAAAA GGCCGCATCC-TGCGCA-AGCGC AAT GCGCTGTGCGGGCGGGCGCGGCA GCCCGCCGCCCGATT cobM 3691007 - 3690213 - | precorrin-4 C11-methyltransferase RD1_3820 3691372 - 3691004 - | hypothetical protein cobl 3692568 - 3691369 - | precorrin-6Y C(5,15)-methyltransferase (decarboxylating) TERM 3057 3691729 - 3691707 - GH 76 -12.6 -2.70932 | CGTTGTGTTCAATCA GCCCCACGCG ATC CGCGCGCGGC TCAACCGAAATGGCG TERM 3058 3691978 - 3692016 + gH 87 -8 -4.56597 | overlap 3692000 GACCGGATGCTGGAA TGTGCGGGGCTGCATGTC GTC GGCACGCAGCGGCGTGCA TTTTTCGCGCGGCCC TERM 3059 3692000 - 3692015 + gH 73 -10.4 -3.33744 | overlap 3691978 GGCTGCATGTCGTCG GCACGC AGCG GCGTGC ATTTTTCGCGCGGCC TERM 3060 3692686 - 3692715 + Gr 84 -9.3 -4.25104 | gap 1, overlap 3692682 CGTAGAACGACCGAT CCGCCAAC-CCTTG CCG CAGCGTGTTGGCGG TTTTGGTGGCGCAGA TERM 3061 3692961 - 3693012 + Gr 83 -4.3 -5.10064 | gap 1 CACCGCTGCGGGTGA TGCTGGCGGTGGGGCGCATGCATC TGGCC GATTTC-GCGCCCAACCCGCAGCA TTTTTATCTGTTGCG TERM 3062 3693170 - 3693160 - gR 78 -6.8 -4.56597 | overlap 3693161 CGTCGTGTCGAAAAA TGCC GGT GGCA GCGGCGCCTATGCCA cobK 3692567 - 3693322 + | precorrin-6A reductase cobJ 3694047 - 3693298 - | precorrin-3B C(17)-methyltransferase cobI 3694769 - 3694044 - | precorrin-2 C20-methyltransferase cobH 3695395 - 3694766 - | precorrin-8X methylmutase cobG 3696537 - 3695398 - | precorrin-3B synthase TERM 3063 3696050 - 3695994 - G 73 -13.5 -2.81547 | opp_overlap 3695994, overlap 3695977 3695991 3696003 GCGCCAGATCAATGA GCGCAGACAGTGCCGTGTCCGGGCTGA TTG CCATACCCGTCGCGGCACCATCCGCGC GCAGGATCAGGGGGG TERM 3064 3696498 - 3696468 - G 70 -12.5 -2.85712 | overlap 3696465 GCACACGCACAACGA GCCCGTCGCCCGA GGCCA TCGGGCGATGCGC GCCGGGGCACCACCC cobN 3699800 - 3696534 - | cobaltochelatase TERM 3065 3698977 - 3698942 - G 76 -8.9 -4.11216 | gap 1, overlap 3698943 GCGCCATCTGGAAAA CCGGCACGTCGCCTGC ATCCA GC-GGCGAGGCGCCGC GCGTGCCCTGTCCGG TERM 3066 3698976 - 3698943 - G 72 -12.4 -3.06515 | gap 1, overlap 3698942 CGCCATCTGGAAAAC CGGCACGTCGCCTGC ATCCA GC-GGCGAGGCGCCG CGCGTGCCCTGTCCG TERM 3067 3699211 - 3699185 - G 77 -10.9 -3.6581 | gap 1, overlap 3699183 ACGACCGGTAAAAGA CGACCA-GGACC AGCG GGTCCGTGGCCG CGCTGGCCAGAACCG cobW 3700862 - 3699807 - | cobalamin biosynthesis protein CobW TERM 3068 3700447 - 3700435 - G 71 -6.9 -4.19258 | overlap 3700436 ACATTCGAGGCAAAA CGGCC CGC GGCCA CGGCCTCGGCATCAG RD1_3829 3701232 - 3700855 - | hypothetical protein TERM 3069 3701194 - 3701143 - G 71 -8.7 -3.794 | gap 2, opp_overlap 3701147 CTGCAATTCATCAAA CAGACGCTGGCCCGGACGTTCGCCG TCGT CGGT-AACGTCGGTGCC-GCGTTTG CATTTGATGCACACC TERM 3070 3701147 - 3701190 + g 78 -10.3 -3.87149 | gap 2, opp_overlap 3701143 AATTCATCAAACAGA CGCTGGCCCGGACGTTCGCCG TCGT CGGT-AACGTCGGTGCC-GCG TTTGCATTTGATGCA TERM 3071 3701704 - 3701682 - H 75 -7 -4.51699 | gap 1, overlap 3701684 ATAACCATCAGAAAA CACGCCGGT GTCCAG ACCGGCG-G CCAAACACTTGGGAG TERM 3072 3701703 - 3701684 - H 80 -10.7 -3.85857 | overlap 3701682 AACCATCAGAAAACA CGCCGGT GTCCAG ACCGGCG GCCAAACACTTGGGA ackA 3701817 - 3702968 + | acetate kinase RD1_3832 3704424 - 3702994 - | cardiolipin synthase RD1_3833 3705104 - 3704421 - | hypothetical protein RD1_3834 3705395 - 3705589 + | hypothetical protein RD1_3835 3707747 - 3705678 - | chain length determinant domain-containing protein TERM 3073 3706789 - 3706816 + g 76 -9.8 -3.727 | gap 1 TGTTCGAACCGTGAC CGCTCCGC-CTGC ACC GCGGCGCGCAGCG TTTCAATGTCCTGCG RD1_3836 3707875 - 3707753 - | hypothetical protein RD1_3837 3708053 - 3708892 + | N-deacetylase/N-sulfotransferase, putative TERM 3074 3709020 - 3709035 + G 84 -9 -4.48987 | overlap 3709030 CGATCTGGTGTTCAT GATCGC GGTG GCGATC TTTTGCTTCTCGCGC TERM 3075 3709369 - 3709337 - g 71 -9.2 -3.76373 | overlap 3709331 3709338 TCCCCAACAGCGAAA TCCTGTTTCGCG GTGAAGGCG CGCGAAACAGGG TGAAGGCGACGTTCA TERM 3076 3709368 - 3709338 - g 70 -12.7 -2.85503 | overlap 3709331 3709337 CCCCAACAGCGAAAT CCTGTTTCGCG GTGAAGGCG CGCGAAACAGG GTGAAGGCGACGTTC RD1_3838 3708889 - 3710160 + | hypothetical protein TERM 3077 3710422 - 3710385 - g 71 -5.3 -4.30576 | opp_overlap 3710404, overlap 3710387 CGCTGAGCATCAAAA CGCTGTCCGCACTGGGC GATG ACCCGGAACGCGCAGCG GACAGGCGCTTTGCC RD1_3839 3710189 - 3711496 + | polysaccharide biosynthesis associate TERM 3078 3711509 - 3711487 - T 75 -6.2 -4.57073 | overlap 3711488 GACCCGCGGCAAAAA GGCGGTGTGA GGC TCATACCGCA CCCATGACGTAGCCG TERM 3079 3711508 - 3711488 - T 70 -9.7 -3.33922 | overlap 3711487 ACCCGCGGCAAAAAG GCGGTGTGA GGC TCATACCGC ACCCATGACGTAGCC RD1_3840 3712546 - 3711500 - | hypothetical protein TERM 3080 3711824 - 3711797 - G 76 -14.2 -3.03124 | gap 1, overlap 3711813 GCGCACCCTGTAATA GCGGTCCGGCGCA AGA TGCGC-GAACCGC TCGCATTCCGCATTC RD1_3841 3712802 - 3714031 + | polysaccharide biosynthesis/export protein, putative RD1_3842 3715282 - 3714050 - | hypothetical protein TERM 3081 3715335 - 3715319 - H 72 -3.6 -4.78107 | opp_overlap 3715326, overlap 3715321 CAGCAGCACCAAAAA CAGACG GTGAG CGCCCG TCAACAGGGCGTTCA TERM 3082 3715326 - 3715350 + H 80 -9.3 -4.08216 | opp_overlap 3715319 3715321 ACCAAAAACAGACGG TGAGCGCCC GTCAACA GGGCGTTCA TTTTGACACGCATCA TERM 3083 3715492 - 3715502 + H 87 -2.4 -5.60993 | CACGGTCTTATCAAT GGAG ATG CGCC TTTTTTTCTGGCAAA RD1_3844 3715550 - 3716749 + | hypothetical protein TERM 3084 3717500 - 3717489 - g 88 -7.2 -4.87665 | opp_overlap 3717489 3717498 CTCGACGCACAAAAA GCGC CACT GCGC TTTGTCGAGGCGGTT TERM 3085 3717546 - 3717530 - g 70 -10.1 -3.53811 | TTCATTGGCCGCAAA GCAGGCG CCC CACCTGC GCGGCCTCGTGATCG RD1_3845 3716829 - 3717974 + | glycosyl transferase, group 1 family protein RD1_3846 3718046 - 3718156 + | hypothetical protein RD1_3847 3718445 - 3718182 - | hypothetical protein RD1_3848 3719683 - 3718751 - | hypothetical protein asnO 3721383 - 3719683 - | asparagine synthetase, putative TERM 3086 3720129 - 3720144 + g 70 -10.4 -3.53012 | opp_overlap 3720125 GCACTTCAAACGCCT GCGCCA TCAG TGGCGC TTTCAAGGCCCGCAG TERM 3087 3721511 - 3721499 - R 74 -10.5 -3.55444 | CCCTGATCCTGCAAA CGCGC AAT GCGCG CAGGCGCGGCGTGTG RD1_3850 3722000 - 3721569 - | hypothetical protein RD1_3851 3722291 - 3722004 - | hypothetical protein TERM 3088 3722442 - 3722412 - R 100 -13.9 -5.54264 | opp_overlap 3722410 3722435, overlap 3722413 AAACATCCAAAAAAA TGCCGGAGACCGG TTCAC CCGGACTCCGGCG GAGTTATATTAGACT TERM 3089 3722441 - 3722413 - R 100 -17.4 -3.90118 | opp_overlap 3722410 3722435, overlap 3722412 AACATCCAAAAAAAT GCCGGAGACCGG TTCAC CCGGACTCCGGC GGAGTTATATTAGAC spaT 3724593 - 3722770 - | subtilin transport ATP-binding protein, putative RD1_3853 3725389 - 3724712 - | sugar transferase domain-containing protein RD1_3854 3725887 - 3726576 + | DNA-binding protein RD1_3855 3727102 - 3726656 - | hypothetical protein TERM 3090 3726987 - 3726976 - G 76 -5.8 -4.72272 | opp_overlap 3726975 3726976 CCGCCGCATCAAAAA GCGA CAGA TCGC CTTGTTCAGACGTCT RD1_3856 3727490 - 3727104 - | hypothetical protein TERM 3091 3727215 - 3727244 + g 74 -12.3 -3.15544 | gap 1, opp_overlap 3727204 GAACCAGCTTTTCCA CTCCGGAGCAT-TG CGC CAGATGCTCTGGAG TTCGTCACGCTGCGC TERM 3092 3727465 - 3727451 - G 81 -5.6 -4.7373 | opp_overlap 3727453 GCAGCGCAGCAAAAA CCGCGA TCG CCACGG CGCACAAGGTGCTGA RD1_3857 3727512 - 3727625 + | hypothetical protein RD1_3858 3729964 - 3727592 - | glycine cleavage T-protein (aminomethyl transferase) family protein RD1_3859 3730201 - 3730052 - | hypothetical protein RD1_3860 3731353 - 3730253 - | racemase, putative TERM 3093 3730598 - 3730576 - G 80 -10.6 -4.0371 | TACCCCCGAGATAAA GGATATCGGG TTG CACGATATCC ACCGCCCGCATGTCG RD1_3861 3732981 - 3731365 - | GMC family oxidoreductase TERM 3094 3732343 - 3732321 - G 70 -3.2 -4.63218 | opp_overlap 3732339, overlap 3732323 TGCCCTCGAACAAAA CGCGCGTGGC ATG GGCACGGGTG CGAATGTCCAAATTC RD1_3862 3733861 - 3732983 - | ABC transporter, permease protein, putative RD1_3863 3734700 - 3733807 - | ABC transporter, permease protein, putative RD1_3864 3735760 - 3734693 - | spermidine/putrescine ABC transporter, ATP-binding protein TERM 3095 3735049 - 3735038 - G 76 -5.8 -4.59773 | CTCCACCGGCAAAAA GGTG GAAT CACC AATGAAATCCGCCAC TERM 3096 3735219 - 3735250 + g 100 -8 -5.24129 | overlap 3735210 AGCTTTTCGTGCAGG CTGCGCAATTCGAT CTGC ATCTGATCGCGCAG TTTTTTATCCAGCGC TERM 3097 3735320 - 3735334 + g 79 -7.8 -4.56597 | opp_overlap 3735315, overlap 3735315 CACGATGGAACGCGC CAGTGC GAC GCGCTG TTTTTGCCCGCCGGA TERM 3098 3735776 - 3735809 + r 72 -11.8 -2.62396 | gap 1, overlap 3735766 ATTCTGTTCCTCAGG TCATTCTGCGGGCCG CGATA CGGCCCGCAGA-TCA TGGTATGGGCGACTG RD1_3865 3736868 - 3735828 - | polyamine ABC transporter, periplasmic binding protein, putative TERM 3099 3736025 - 3736037 + g 75 -7.7 -4.16943 | opp_overlap 3736024 AGGTAGGCAGATCAT CCTGA TAC TCAGG TTTTGAGATCTCGGC TERM 3100 3736460 - 3736437 - G 70 -3.7 -4.70659 | opp_overlap 3736457, overlap 3736439 TTCCACATCGAAAAA GTCCGCCCA GCTTTG TGGGCCGTC ATCGCCGTAGGTTTG RD1_3866 3738258 - 3736936 - | oxidoreductase, putative lysR 3738224 - 3739321 + | LysR family transcriptional regulator TERM 3101 3739350 - 3739324 - fH 90 -16.6 -2.78463 | opp_overlap 3739341, overlap 3739310 ACGCGCCGCATGACA GGCGCGCGCA CACCCAC TGCGCGCGCC GCTGGCCGGCTGGTC RD1_3868 3739372 - 3739926 + | hypothetical protein RD1_3869 3740999 - 3739968 - | AraC family transcriptional regulator TERM 3102 3740205 - 3740229 + g 71 -7.7 -4.08216 | overlap 3740213 GTTGGACCCCGTGGC GCGGTTGACGG CTG CGGACAGCCGC TTTTCCGGCAGATGC RD1_3870 3741118 - 3742131 + | hypothetical protein RD1_3871 3742367 - 3743557 + | monooxygenase, putative RD1_3872 3744436 - 3743696 - | oxidoreductase, putative RD1_3873 3745281 - 3744433 - | hypothetical protein TERM 3103 3745163 - 3745199 + g 76 -5.7 -4.65916 | opp_overlap 3745154 3745171 3745174 TAATCATCAGGCGTT CCGGAAAAGATGGGG ATTTCCA CCCCGTCATAGCCGG TTTTCTTGAGATCAG RD1_3874 3745442 - 3746485 + | hypothetical protein RD1_3876 3746496 - 3747632 + | oxidoreductase, putative RD1_3877 3747583 - 3748293 + | hypothetical protein RD1_3878 3749259 - 3748315 - | sugar kinase, putative RD1_3879 3749543 - 3749256 - | hypothetical protein TERM 3104 3749315 - 3749293 - G 77 -3.2 -4.94058 | TCAACGTAAAGAAAA GCCGTGCCGA TCC CCAGCGCCGC CGCCACGCCCAGCAC RD1_3880 3750634 - 3749540 - | sugar ABC transporter, ATP-binding protein, putative RD1_3881 3751500 - 3750631 - | sugar ABC transporter, permease protein, putative y4oQ 3752417 - 3751500 - | ABC transporter, permease protein. putative TERM 3105 3751735 - 3751750 + g 71 -6 -4.34402 | opp_overlap 3751734 GTGCGAAACAGAACC GCCAGC AAAA GCAGGC TTTTGATATAGGGAA TERM 3106 3752449 - 3752481 + r 75 -11.3 -3.33492 | gap 1, opp_overlap 3752450 3752451 3752453, overlap 3752450 AGGGTTATGTTGGAA AC-CAGAGCCCGGG ATTGCG CCCGGGCTCTGCGC TTATCAGATCACTCG TERM 3107 3752450 - 3752480 + r 83 -14.8 -2.59881 | gap 1, opp_overlap 3752450 3752451 3752453, overlap 3752449 GGGTTATGTTGGAAA C-CAGAGCCCGGG ATTGCG CCCGGGCTCTGCG CTTATCAGATCACTC TERM 3108 3752479 - 3752450 - R 95 -15 -3.55444 | opp_overlap 3752450 3752449, overlap 3752451 3752453 GGGTTATGTTGGAAA CCAGAGCCCGGG ATTGCG CCCGGGCTCTGC GCTTATCAGATCACT TERM 3109 3752478 - 3752451 - R 100 -18.5 -2.73124 | opp_overlap 3752450 3752449, overlap 3752450 3752453 GGTTATGTTGGAAAC CAGAGCCCGGG ATTGCG CCCGGGCTCTG CGCTTATCAGATCAC TERM 3110 3752476 - 3752453 - R 86 -15.3 -2.91144 | opp_overlap 3752450 3752449, overlap 3752451 3752450 TTATGTTGGAAACCA GAGCCCGGG ATTGCG CCCGGGCTC TGCGCTTATCAGATC RD1_3883 3753950 - 3752490 - | ABC transporter, periplasmic substrate-binding protein, putative TERM 3111 3753279 - 3753293 + g 71 -7.1 -4.1822 | GTCCAGCGTTTCCCC GGCGA GCATA TCGCC TTTCTTGCGCTGGAA RD1_3884 3755137 - 3754016 - | sugar ABC transporter, ATP-binding protein, putative TERM 3112 3754650 - 3754639 - G 74 -7.2 -4.3129 | overlap 3754641 CATCCAGCAGCAAAA GCCG TGGA CGGC GCACGATGGCACGGC RD1_3886 3756223 - 3755165 - | endonuclease, putative RD1_3887 3757275 - 3756253 - | transcriptional regulator protein, putative TERM 3113 3756982 - 3756997 + g 70 -3.2 -4.59853 | overlap 3756983 CGGAACCGTGACCGC GCGGAT GTCG ATCCGG TTTTTGGAGGCTTCG RD1_3888 3757369 - 3757803 + | hypothetical protein RD1_3889 3759579 - 3757822 - | dihydroxyacetone kinase, putative RD1_3890 3760001 - 3759735 - | hypothetical protein RD1_3891 3760392 - 3759985 - | helix-turn-helix domain-containing protein TERM 3114 3760014 - 3760030 + g 75 -7.9 -4.17048 | CATCGCTACCATCCC GCAACGC AAC GCGTAGC TTCTTTTCCAGGCGC aatA 3760476 - 3761678 + | aspartate aminotransferase ychF 3762887 - 3761790 - | translation-associated GTPase RD1_3894 3763271 - 3762954 - | hypothetical protein TERM 3115 3763040 - 3763019 - G 82 -12.3 -3.58864 | overlap 3763017 CGAGCAGGATAAACA TCGGATGGG TCAG CCCACCCGA AAAGAACAGGGCGGG TERM 3116 3763217 - 3763203 - G 81 -7.8 -4.60889 | overlap 3763204 AATTATTCTCAAAAA CCACCC GCT GAGTGG GCGCGAAGCGCTTGG trpA 3763301 - 3764092 + | tryptophan synthase subunit alpha RD1_3896 3764341 - 3765510 + | putative L-lactate dehydrogenase RD1_3897 3766722 - 3765535 - | integral membrane transport protein, putative TERM 3117 3766642 - 3766630 - G 81 -4.8 -5.0133 | overlap 3766631 CATCTGCGCAAAAAA CGCA GCCCA TGCG GCAGCCATCAGGGCG RD1_3898 3766855 - 3767493 + | 50S ribosomal protein L25/general stress protein Ctc TERM 3118 3767518 - 3767541 + F 91 -11.7 -4.21922 | opp_overlap 3767506 3767514 3767518, overlap 3767520 CAACGCGATAAGCTA TGCGGGGCC CTTTGC GGCCCCGTA TTTCGTTTTGGATCA TERM 3119 3767520 - 3767539 + F 83 -12.1 -3.70102 | opp_overlap 3767506 3767518 3767514, overlap 3767518 ACGCGATAAGCTATG CGGGGCC CTTTGC GGCCCCG TATTTCGTTTTGGAT pth 3767598 - 3768299 + | peptidyl-tRNA hydrolase TERM 3120 3768920 - 3768942 + G 70 -4.6 -4.52589 | opp_overlap 3768870 GACCCCCGCGACCCT GCGGACCTGC TGC GCCTGACCGC TTTTCTGTGGCCGGA TERM 3121 3769169 - 3769196 + G 73 -9.8 -3.64703 | opp_overlap 3769154 GCGGCCGGTGCGCAG GCCACGCAAACG CGCC CCCTTGCGTGGC TTTCACTGGAAACCG RD1_3901 3768296 - 3769336 + | hypothetical protein nylB 3769336 - 3770523 + | 6-aminohexanoate-dimer hydrolase, putative TERM 3122 3770530 - 3770519 - g 78 -4.4 -4.81851 | ATGCAAATGGAAAAA GATG ACAG CATC AACGTATTGGGCGAA RD1_3904 3770510 - 3770734 + | hypothetical protein RD1_3905 3770951 - 3771589 + | hypothetical protein trpB 3772829 - 3771597 - | tryptophan synthase subunit beta TERM 3123 3772643 - 3772625 - G 81 -8 -4.64861 | GTTCGGCAAAATAAA GCGGGCTG GGT CGGCCCAC GTAATGGGTCCACAG trpF 3773982 - 3773314 - | N-(5'-phosphoribosyl)anthranilate isomerase RD1_3908 3774373 - 3774023 - | hypothetical protein ihfB 3774657 - 3774373 - | integration host factor subunit beta TERM 3124 3775011 - 3774978 - R 100 -21.1 -4.56597 | opp_overlap 3774981, overlap 3774981 TTGCGCCGCCAAAAA CAAGGCCCCGGCAAC CTTT GTTGCCGGGGCCTTT GATCTTCAAACCCGA TERM 3125 3775008 - 3774981 - R 100 -22.8 -4.40561 | opp_overlap 3774981, overlap 3774978 CGCCGCCAAAAACAA GGCCCCGGCAAC CTTT GTTGCCGGGGCC TTTGATCTTCAAACC TERM 3126 3774981 - 3775008 + r 100 -22.8 -3.92324 | opp_overlap 3774978 3774981 CGCCGCCAAAAACAA GGCCCCGGCAAC CTTT GTTGCCGGGGCC TTTGATCTTCAAACC rpsA 3776740 - 3775061 - | 30S ribosomal protein S1 TERM 3127 3776402 - 3776431 + g 70 -4.2 -4.57073 | gap 1 CCGGCCAAAGATTGC GCCTTCGACACGC TCTTC GC-TGGCGTAGGC TTTTTCCAGACGGTC TERM 3128 3776870 - 3776843 - R 79 -7.6 -4.41348 | opp_overlap 3776841 3776843 3776844, overlap 3776847 CTGCGCTGAAACAAA CGAAGGGCCGGT GATC ACCGACCCTGCC TGTTTTCCTCAGCCG TERM 3129 3776866 - 3776847 - R 79 -11.4 -3.75884 | opp_overlap 3776844 3776843 3776841, overlap 3776843 GCTGAAACAAACGAA GGGCCGGT GATC ACCGACCC TGCCTGTTTTCCTCA RD1_3912 3777612 - 3777019 - | hypothetical protein TERM 3130 3777700 - 3777646 - R 100 -11.3 -5.19212 | gap 2, opp_overlap 3777646, overlap 3777649 ATGATCATCAAAAAA GACGCGTCCCGCGGCGCGCGCCGACGG GGA CCGTTA-CGCGCGCCGCGCCTCG-ATC GCCTTGATCGCTGCG TERM 3131 3777698 - 3777649 - R 76 -11.9 -3.12304 | gap 1, opp_overlap 3777646, overlap 3777646 ATCATCAAAAAAGAC GCGTCCCGCGGCGCGCGCCGACGG GGA CCGTTA-CGCGCGCCGCGCCTCGA TCGCCTTGATCGCTG RD1_3913 3778296 - 3777679 - | cytidylate kinase, putative aroA 3779656 - 3778304 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 3132 3779701 - 3779681 - R 70 -9 -3.68988 | overlap 3779682 CGGTATTGAACAGAA CTGCCGCT GGATT AGCGGCAA GGCGCTGCTGCGTCC trmB 3780441 - 3779740 - | tRNA (guanine-N(7))-methyltransferase TERM 3133 3779768 - 3779791 + g 100 -10.3 -4.75472 | gap 1 AAGGTCAGGTAATGC GGCG-TGCGC CCTTC GCGCAGCGCC TTTTGTTCATATCGC TERM 3134 3780487 - 3780468 - R 86 -10 -4.25848 | AACGGGCCATGAAAA CCGCTGCA ACAT TGCAACGG GCAGAAGTTGGTTGG TERM 3135 3780505 - 3780550 + r 70 -8.8 -3.65812 | opp_overlap 3780508, overlap 3780508 3780542 AGAAGTTGGTTGGCA ATATGCTGCCGGACGGCCCG CCATGA TGGGGCGTCCGGCGGCCTCG TTCTGTTACAGCGCC TERM 3136 3780547 - 3780508 - R 76 -12 -3.01791 | opp_overlap 3780505 3780508 3780542 AGTTGGTTGGCAATA TGCTGCCGGACGGCCC GCCATGAT GGGGCGTCCGGCGGCC TCGTTCTGTTACAGC TERM 3137 3780508 - 3780547 + r 86 -14.9 -2.94293 | opp_overlap 3780508, overlap 3780505 3780542 AGTTGGTTGGCAATA TGCTGCCGGACGGCCCG CCATGA TGGGGCGTCCGGCGGCC TCGTTCTGTTACAGC metK 3781737 - 3780556 - | S-adenosylmethionine synthetase cutE 3783312 - 3781822 - | apolipoprotein N-acyltransferase, putative TERM 3138 3781991 - 3781967 - G 91 -13.5 -3.76224 | GGCGCATCTATGAAA CCGGCCTGCCC GAG GGGCAGACTGG AAATGATCCGCCCCG TERM 3139 3783338 - 3783382 + r 71 -6.4 -4.25104 | gap 2, overlap 3783337 CCCGCCGAACGCCCC GGC-GCAGGTGT-CACGCCG TTTGAGC CGCCGTGCGCACCCGCAGCC TTTTGATGCGGCGCG RD1_3918 3784244 - 3783348 - | hemolysin-like protein, putative TERM 3140 3783583 - 3783606 + g 70 -3.1 -4.67982 | gap 1 TCAAGCGGAGTCTTT GCCAGGGC CAGATAGCA GCCC-GGC TTTTCTTCGGTGAAA RD1_3919 3784783 - 3784283 - | hypothetical protein phoH 3785839 - 3784820 - | phosphate starvation inducible protein, putative TERM 3141 3785630 - 3785614 - G 78 -10.1 -3.86346 | overlap 3785626 CCAGCCGGGCATAAA GCGCATG CAA CACGCGC ATCGCATCCGTAGAA miaB 3787277 - 3785952 - | tRNA-i(6)A37 thiotransferase enzyme MiaB, putative TERM 3142 3786844 - 3786825 - G 70 -3.5 -4.59773 | gap 1, opp_overlap 3786835, overlap 3786826 CTGCACGGTCAAAAA CGCTGACG GGGCG CGCC-GCG CTTTGGGGCGCGCCT RD1_3922 3787841 - 3787422 - | FUR family transcriptional regulator fabA 3788036 - 3788545 + | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase fabB 3788577 - 3789806 + | 3-oxoacyl-(acyl-carrier-protein) synthase TERM 3143 3790419 - 3790399 - g 71 -6.7 -4.25104 | CCGGTCCGATGAAAA CGCTCGCCG GGG CGGCCATCG GCGGGGCGCGCAAAA fabI 3789816 - 3790607 + | enoyl-(acyl-carrier-protein) reductase, putative TERM 3144 3790665 - 3790644 - Tf 81 -12.3 -3.53012 | gap 1 CCCTTCGCCGTCAAA GCGCAGGGCG CTT CGC-CTGCGC CCGACCGGCAATACA RD1_3927 3791266 - 3790832 - | hypothetical protein RD1_3926 3790806 - 3790919 + | hypothetical protein TERM 3145 3790903 - 3790928 + gT 84 -6.1 -4.87807 | overlap 3790873 3790908 CGGCCGACGCGGGCG CGTCGCTGATC GGCT GATCAGTTGCG TTTTTCGTGTCTTGC slyD 3791835 - 3791401 - | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative deh 3792019 - 3792705 + | (S)-2-haloacid dehalogenase RD1_3930 3792705 - 3793529 + | hydrolase, putative TERM 3146 3794238 - 3794252 + G 75 -8.5 -4.19238 | GTGACGCCATTATCA CGCCC ACGCC GGGCG TTTTGACCTTCCCCA RD1_3931 3793526 - 3794509 + | threonine dehydratase, putative pcaD 3794550 - 3795353 + | 3-oxoadipate enol-lactonase, putative estC 3795346 - 3796056 + | esterase EstC, putative pcaB 3796060 - 3797391 + | 3-carboxy-cis,cis-muconate cycloisomerase, putative tetA 3797388 - 3798593 + | tetracycline resistance protein TERM 3147 3799353 - 3799342 - g 71 -5.8 -4.28994 | overlap 3799352 CATGAGCGAGGAAAA GCTG GAAA CAGC CAAGGATTTCGGCGC RD1_3937 3798695 - 3799786 + | dehydrogenase, putative TERM 3148 3799943 - 3799977 + G 72 -13.4 -2.54325 | overlap 3799942 3799940 3799939 ATGCTACGCCTCAAG CGTCGGACCCGTCGCG ATG CGCGCCGTGATCGACG ATGTCTTTGCCCGCC TERM 3149 3800756 - 3800731 - g 77 -11.1 -3.62591 | opp_overlap 3800730, overlap 3800732 TCTATAATGCGCAAA TGGCCCCGCAT CTTT ATGCAGGGCCG GTTGAATGGGCCGCC TERM 3150 3800755 - 3800732 - g 77 -14.6 -2.77233 | opp_overlap 3800730, overlap 3800731 CTATAATGCGCAAAT GGCCCCGCAT CTTT ATGCAGGGCC GGTTGAATGGGCCGC RD1_3939 3799812 - 3801053 + | racemase, putative RD1_3940 3801757 - 3801062 - | hypothetical protein metE 3802881 - 3801757 - | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, putative RD1_3942 3803901 - 3802927 - | cupin domain-containing protein RD1_3943 3804906 - 3803938 - | hypothetical protein TERM 3151 3804297 - 3804337 + g 73 -9.8 -3.63922 | gap 2, overlap 3804295 AGACCTGCGGGATCA CGGCCATATCC-G-CCCCCA TGA TGCGGGTCAGGATATCGCCG TATTTTGCGCCCCAT RD1_3944 3805919 - 3804903 - | LacI family transcriptional regulator RD1_3945 3806697 - 3805936 - | dehydrogenase RD1_3946 3807743 - 3806694 - | hypothetical protein TERM 3152 3807704 - 3807716 + g 74 -6.9 -4.34488 | opp_overlap 3807689 3807687 TCGCAGCCCGAACCG GCGCG AGG CGTGC TTTGTTATCGCTGTG RD1_3947 3807894 - 3807757 - | hypothetical protein hisD 3809229 - 3807901 - | histidinol dehydrogenase RD1_3949 3809772 - 3809242 - | hypothetical protein RD1_3950 3810958 - 3809801 - | putative sugar ABC transporter, permease protein RD1_3951 3811983 - 3810958 - | sugar-ABC transporter, permease protein, putative RD1_3953 3813328 - 3812108 - | sugar ABC transporter substrate-binding domain TERM 3153 3813357 - 3813381 + r 71 -10.7 -3.2632 | overlap 3813356 3813352 GTTGCAATTGTGGTG GGGTGCATCTT GCA AGGCTGCACCC TCTGTTTGGCCCTTT RD1_3954 3814468 - 3813413 - | sugar ABC transporter, ATP-binding protein, putative TERM 3154 3814534 - 3814546 + H 76 -2.7 -5.0133 | AGTCACCGGACCCCA TCTTT GGC AAGGA TTTTTTGCACACGTG RD1_3955 3814551 - 3814670 + | hypothetical protein TERM 3155 3814697 - 3814668 - T 100 -13.7 -5.15634 | CATGGCACGAAAAAA TGATGCCGCTCAC CCCG GTGAACGACATCA AAGCACTCGTTAAAA gcdH 3815990 - 3814767 - | glutaryl-CoA dehydrogenase TERM 3156 3814828 - 3814812 - G 72 -10.9 -3.27298 | opp_overlap 3814812 CCGCCCAAGGATCAA CGCATGA ATG TCATGCG TGCCTTCATAGGTAT RD1_3957 3816098 - 3816985 + | LysR family transcriptional regulator RD1_3958 3817905 - 3817240 - | hypothetical protein TERM 3157 3817401 - 3817417 + g 70 -12.3 -2.87344 | CGTCAGGCCCGAGGA TCACCGG CAT CCGGTGA TGTATGCGCGCCATC TERM 3158 3817643 - 3817615 - G 70 -10.2 -3.44325 | opp_overlap 3817610 AGTCGTGACAACCAA TGCGCGCCGCTG ACGCA CAGCCGCGCGAA ATGCAGGTTTTTCTG RD1_3959 3819565 - 3818009 - | putative 5-nucleotidase RD1_3960 3819690 - 3820040 + | hypothetical protein TERM 3159 3820595 - 3820571 - g 81 -5.5 -4.74706 | opp_overlap 3820577, overlap 3820573 CCCAACACCGAAAAA CTGCGCGACCT GCA AGGGCCCGCCG CCCTTGCCGCGCTGC RD1_3961 3820037 - 3821089 + | dihydroorotate dehydrogenase 2 dinF 3822426 - 3821086 - | DNA-damage-inducible protein, putative RD1_3963 3822934 - 3822416 - | hypothetical protein RD1_3964 3823353 - 3822931 - | thioesterase family protein TERM 3160 3823841 - 3823815 - g 86 -12.3 -3.90856 | gap 1, opp_overlap 3823815 AATTGCGGAATTAAA GCGGCTGC-GCG ATAC CACGGCAGCCGC TTTGAAAAGCTAAGG TERM 3161 3823815 - 3823841 + G 74 -11.6 -3.54424 | gap 1, opp_overlap 3823815 AATTGCGGAATTAAA GCGGCTGCGCG ATACCA CG-GCAGCCGC TTTGAAAAGCTAAGG RD1_3965 3823483 - 3823854 + | transcriptional regulator, putative RD1_3966 3824096 - 3823851 - | hypothetical protein luxR 3824918 - 3824172 - | LuxR family transcription regulator TERM 3162 3825194 - 3825206 + G 82 -9.1 -4.42386 | CTTTGATGTCACACC CCGCA CAT TGCGG TTTTATGAATCAAAA TERM 3163 3825282 - 3825254 - g 76 -8.7 -4.11216 | opp_overlap 3825222, overlap 3825224 CCGTGAGGGGCAAAA GCGCTTGTTCACG CGC CGTGATCGCGCGC GGCTCAAACTCATTC RD1_3968 3825126 - 3825539 + | MerR family transcriptional regulator TERM 3164 3826096 - 3826065 - g 74 -12.2 -3.21416 | gap 1, overlap 3826052 GACCGGCACGATGAA CCTGA-CCGAGCCGC ATT GCGGCACGGATCTGG GCCTGATGCGCACCA TERM 3165 3826990 - 3826979 - g 73 -4.4 -4.58395 | TTGATCTGGTAAAAA CCTT CATC AAGG ACAACGCGGGACAGG RD1_3969 3825580 - 3827361 + | acyl-CoA dehydrogenase family protein fadE 3827487 - 3828635 + | acyl-CoA dehydrogenase gst 3828677 - 3829315 + | glutathione S-transferase, putative TERM 3166 3830347 - 3830363 + G 76 -5.7 -4.58685 | TGAACGAGGCCTTTG CCGCCGT GGT GCTGCGG TTTTTGCAGGCGTTT fadA 3829356 - 3830567 + | acetyl-CoA acetyltransferase TERM 3167 3831551 - 3831539 - g 78 -10.5 -3.86822 | overlap 3831527 GAAGCGCTGGAGAAA GGCGC GGT GCGCC CGAATGATGTCGCAG fadJ 3830600 - 3832798 + | fatty acid oxidation complex alpha subunit, putative TERM 3168 3832841 - 3832825 - f 88 -11.5 -4.1021 | opp_overlap 3832825 CGTCAGAACCAGAAA GGGGGCA GAT CGCCCCC TTTTTCATGCGCCAT TERM 3169 3832825 - 3832841 + F 100 -10.8 -4.7254 | opp_overlap 3832825 CGTCAGAACCAGAAA GGGGGC AGATC GCCCCC TTTTTCATGCGCCAT TERM 3170 3833864 - 3833878 + G 80 -11.4 -3.79906 | AAAAGGTGACGCATT TCGGCG GTG CGCCGA TTGTTCTGAACATGC RD1_3974 3833041 - 3834663 + | AMP-binding domain-containing protein TERM 3171 3835056 - 3835044 - g 73 -4.7 -4.66609 | overlap 3835045 3835046 GACGCCATCGAAAAA CTGCG CCG CGCGG TGGAACGCAGGCGCC TERM 3172 3835214 - 3835197 - g 75 -8.3 -4.18018 | overlap 3835198 GTGCCGGAGGTAAAA CGCGCCG AGAT CGGGGCG GCGCTGCTGACGCGG TERM 3173 3835462 - 3835445 - g 71 -7.7 -4.07885 | CATCCTTGCGGAAAA GACCCTG ATGG CAGGATC AGACCCGCTGCGCGC RD1_3975 3834717 - 3835784 + | hypothetical protein upp 3836424 - 3835792 - | uracil phosphoribosyltransferase deoB 3837672 - 3836449 - | phosphopentomutase TERM 3174 3837046 - 3837025 - G 74 -11.5 -3.55444 | opp_overlap 3837024 CGCCGATCCCGTAAA GGGCCGCGC GATG ACACGGCCC ACTTTCATGCGGTGC deoA 3838982 - 3837672 - | thymidine phosphorylase TERM 3175 3838509 - 3838493 - G 73 -9.3 -3.89346 | CTCGTACTGCATAAA GCCTGCG ATC CGCCGGC GCGATATCGGCGCTG cdd 3839373 - 3838984 - | cytidine deaminase TERM 3176 3839026 - 3839039 + g 70 -3.1 -4.68724 | gap 1, opp_overlap 3839026 CACCCCGGGCAAAAG CGCACC CAC GGT-CG TTTTCTGTTCAATAC RD1_3981 3840543 - 3839452 - | cupin domain-containing protein TERM 3177 3840064 - 3840046 - G 74 -3.8 -4.77165 | GCCCCGATAACAAAA GATCAGCT GAA AACCGACC GTGTGATAATGCACC TERM 3178 3840429 - 3840417 - G 88 -6.9 -5.0133 | overlap 3840418 3840419 CATGGCCGGAAAAAA CCGCC ACT GACGG GTCATCAGCGGGATA RD1_3982 3841253 - 3840540 - | hypothetical protein RD1_3985 3844371 - 3843724 - | hypothetical protein TERM 3179 3845252 - 3845242 - g 74 -3.2 -4.77036 | TTGGACGATGAAAAA CATC TAT GACG TGGACCCCGGGGATG prpE 3844445 - 3846337 + | propionate--CoA ligase TERM 3180 3846365 - 3846384 + T 73 -9.2 -3.80893 | opp_overlap 3846365 GGTTGAACGAAAAAA GCAGCCCC GAAT GGGACTGC TTTGACTTATCGCGT TERM 3181 3846384 - 3846365 - T 100 -11.4 -5.26875 | opp_overlap 3846365 GGTTGAACGAAAAAA GCAGCCCC GAAT GGGACTGC TTTGACTTATCGCGT csbD 3846717 - 3846508 - | stress response protein CsbD, putative TERM 3182 3846775 - 3846759 - R 81 -8 -4.26903 | opp_overlap 3846759 CTCAGTTGAGTAAAA CGCATG CGCAT CATGCG TCCTTCACTGCATCA RD1_3988 3848140 - 3846932 - | coenzyme F420 hydrogenase, beta subunit, putative ppnK 3848901 - 3848140 - | inorganic polyphosphate/ATP-NAD kinase TERM 3183 3850225 - 3850207 - g 71 -8 -4.11216 | CTTTGATCCGGAAAA GCCGATGG TGA CCTCCGGC ATCCGTCTGGGCAGC glyA 3849125 - 3850420 + | serine hydroxymethyltransferase TERM 3184 3850461 - 3850424 - T 79 -13.3 -2.73542 | overlap 3850447 CCGAACCTCTAAGCA CCTCACGGCCCCGCATG ATCA CATGCGGGGCCGGACCG GTTCAGCCCGCAACC dctM 3851747 - 3850464 - | TRAP dicarboxylate transporter, DctM subunit, putative TERM 3185 3850734 - 3850719 - G 70 -3.2 -4.59773 | GGCCACCGGCAAAAA GATCGG CGTG CAGATC AGGATCAGCGCCGCC RD1_3993 3852284 - 3851757 - | C4-dicarboxylate ABC transporter, permease component, putative TERM 3186 3852306 - 3852335 + r 83 -9.9 -4.11692 | overlap 3852307 TCCCCACCGTGGACG TGTCTGGCCCCCG AGAT CGGGCACCAGACG TTTTCAGCATGGATC TERM 3187 3852307 - 3852334 + r 72 -11.2 -3.06694 | overlap 3852306 CCCCACCGTGGACGT GTCTGGCCCCCG AGAT CGGGCACCAGAC GTTTTCAGCATGGAT dctP 3853342 - 3852362 - | TRAP dicarboxylate ABC transporter, substrate-binding protein kdgF 3853927 - 3853616 - | pectin degradation protein RD1_3996 3854691 - 3853948 - | oxidoreductase, putative RD1_3997 3854873 - 3855559 + | GntR family transcriptional regulator putative frpC 3855818 - 3857464 + | iron-regulated protein frpC, putative TERM 3188 3857486 - 3857520 + F 85 -12.8 -3.48276 | overlap 3857487 3857491 AGTACTTCCGAGGCG AGTGGCCCCGTCAGCT TTT GGCTGGCGGGGTTACG TTATCTGCCCGGCCA TERM 3189 3857487 - 3857519 + F 89 -16.3 -2.68823 | overlap 3857486 3857491 GTACTTCCGAGGCGA GTGGCCCCGTCAGCT TTT GGCTGGCGGGGTTAC GTTATCTGCCCGGCC TERM 3190 3857491 - 3857515 + F 100 -15.7 -3.26449 | overlap 3857487 3857486 TTCCGAGGCGAGTGG CCCCGTCAGCT TTT GGCTGGCGGGG TTACGTTATCTGCCC TERM 3191 3857587 - 3857573 - f 73 -9.2 -3.91911 | CGCACGGCAACTAAA CCACCC CAT GGGCGG AAAAACGCACAGCAC RD1_3999 3857703 - 3858239 + | RNA polymerase ECF-type sigma factor, putative RD1_4000 3858843 - 3858277 - | hypothetical protein TERM 3192 3858916 - 3858927 + H 71 -5.8 -4.27681 | opp_overlap 3858915 GGTTCAAAAAAACTT GGCA ATAC TGCC TGTTTTTTCATTCAT apr 3859192 - 3860187 + | subtilisin carlsberg precursor, putative znuA 3861295 - 3860198 - | zinc ABC transporter, periplasmic zinc-binding protein TERM 3193 3861374 - 3861416 + GH 74 -10.5 -3.56643 | CATGCGTCAGTGACA CGCTGGCCG-CCGCCGAGGCA CGC TGCG-CGGCGGATGGTCTGCG TTTCACGCCTGTGCG zur 3861289 - 3861804 + | zinc uptake regulation protein znuC 3861801 - 3862568 + | zinc ABC transporter, ATP-binding protein znuB 3862568 - 3863362 + | zinc ABC transporter, permease protein TERM 3194 3863535 - 3863496 - f 74 -10.9 -3.5764 | gap 2 AAGGGGACCGCGAAA CG-CTTTGCCAACC-CCGA AGTG TCGGCGGTCGACAAAGGCG CAAGGGCTGGGATAG RD1_4008 3863570 - 3864370 + | hypothetical protein TERM 3195 3864840 - 3864876 + G 78 -4.3 -4.80882 | gap 1, opp_overlap 3864860, overlap 3864840 3864839 CAAAGCCTCGGTGAT CGTCGGCGGTCAGGTC AAAGGC GGCCTG-CCGACGCTG TTTTTGATATACCCT RD1_4009 3864490 - 3865224 + | proteasome-type protease, putative RD1_4011 3866026 - 3865451 - | hypothetical protein TERM 3196 3866087 - 3866066 - R 100 -17.3 -4.20696 | opp_overlap 3866066 TTATCAAGTGCAAAA GGCCGCAGC GTTC GCTGCGGCC TTTTTTCGTAGTGAT TERM 3197 3866066 - 3866087 + r 100 -17.3 -5.19212 | opp_overlap 3866066 TTATCAAGTGCAAAA GGCCGCAGC GTTC GCTGCGGCC TTTTTTCGTAGTGAT tuf 3867345 - 3866170 - | elongation factor Tu fusA 3869540 - 3867423 - | elongation factor G rpsG 3870076 - 3869606 - | 30S ribosomal protein S7 TERM 3198 3869653 - 3869666 + g 74 -5.9 -4.57073 | CGTCTGCCATCTTGT GCGTG TCTT CGCGC TTTTTCACCGCGGTG rpsL 3870460 - 3870089 - | 30S ribosomal protein S12 TERM 3199 3870353 - 3870371 + g 71 -8.1 -4.08394 | gap 1, opp_overlap 3870365, overlap 3870352 TGTGGTTGTGTAGAC GCGCGTGC AAAC GC-CGCGC TTTTGCGGACACTCT TERM 3200 3870556 - 3870570 + r 71 -4.9 -4.67607 | opp_overlap 3870566, overlap 3870557 CCATGAGCCGCCCCT TGCGC AAAAA GCGCG TTTATTTCTTGCCGC TERM 3201 3870610 - 3870566 - R 95 -10.2 -4.56597 | gap 1, opp_overlap 3870557 3870556 3870607, overlap 3870607 CCCCTTGCGCAAAAA GCGCGTTTATTTCTTGCCGCA CGAC TGCGACAACAAAAAAAC-CGC CTCCGCTTCCGTACC TERM 3202 3870640 - 3870607 - R 100 -5.3 -5.88565 | gap 1, opp_overlap 3870607, overlap 3870566 GCGACAACAAAAAAA CCGCCTCCGCTTCC GTACCGA GGAAACG-ACGCGG TGGGTTAACAGAGGA RD1_4016 3871691 - 3870822 - | integral membrane protein, putative TERM 3203 3871056 - 3871044 - G 76 -6.9 -4.45068 | ACCGCCAATAATAAA GACCG CAG CGGCC AAAACCATGCCGCCC TERM 3204 3871253 - 3871241 - G 70 -4.1 -4.63527 | CGAGCAGGGCAAAAA TCGAC CAG ATCGA AAACCCATCCGCACC TERM 3205 3871829 - 3871790 - H 100 -16.5 -3.73775 | opp_overlap 3871796, overlap 3871791 3871796 CCCATCTGCACGAAA TGAAAAGCCCCCACCGG TCGGAT CCGGTGAGGGCTTTCCC TGTTCATGAAGCGCC TERM 3206 3871828 - 3871791 - H 100 -20 -2.84051 | opp_overlap 3871796, overlap 3871790 3871796 CCATCTGCACGAAAT GAAAAGCCCCCACCGG TCGGAT CCGGTGAGGGCTTTCC CTGTTCATGAAGCGC TERM 3207 3871796 - 3871823 + H 100 -14.1 -3.77831 | opp_overlap 3871791 3871790 3871796 TGCACGAAATGAAAA GCCCCCACCGG TCGGAT CCGGTGAGGGC TTTCCCTGTTCATGA TERM 3208 3871823 - 3871796 - H 100 -16.3 -4.58773 | opp_overlap 3871796, overlap 3871791 3871790 TGCACGAAATGAAAA GCCCCCACCGG TCGGAT CCGGTGAGGGC TTTCCCTGTTCATGA TERM 3209 3871876 - 3871933 + G 78 -6.6 -4.62069 | gap 3, opp_overlap 3871867 3871880 3871881, overlap 3871877 3871880 GAAGTACCTGAAACA TCAAGTGTCACGTAACGC-GT-TGAAATC TTT GATTTCAGACAGCGTTACGTGAT-CGAGG TTTTTCGCATGACGC TERM 3210 3871929 - 3871880 - g 70 -10.4 -3.46285 | gap 3, opp_overlap 3871877 3871876 3871880, overlap 3871881 TACCTGAAACATCAA GTGTCACGTAACGC-GT-TGAAATC TTT GATTTCAGACAGCGTTACGTGAT-C GAGGTTTTTCGCATG RD1_4017 3871835 - 3871927 + | hypothetical protein rpoC 3876194 - 3871950 - | DNA-directed RNA polymerase subunit beta' TERM 3211 3872298 - 3872322 + g 73 -4.2 -4.72272 | gap 1 GATCCCCAGAAGGAT CGGTTCGCCCT TGGC AGGACGG-CCG TTTTTGCTCAGCGCC rpoB 3880631 - 3876495 - | DNA-directed RNA polymerase subunit beta TERM 3212 3877581 - 3877607 + g 74 -10.9 -3.55622 | gap 1 TTGCAACAGGTCCTC GGTGATCTCCGC ATTC GCGGAGA-CGCC TTTCGGCCCCTTCAC TERM 3213 3879305 - 3879325 + g 80 -14.7 -3.07895 | overlap 3879324 AGGCGACGATGTCTT CGCGGCGCA AGG TGCGCTGCG TGTCTTCGGCGTCCA TERM 3214 3880809 - 3880842 + r 100 -13.9 -4.65895 | opp_overlap 3880805 3880807, overlap 3880810 3880811 3880840 CCTTACCAAGACAGG TTGAGCCGGACCTGA AATC TCAGGTCCAGCTCGG TTTTTGCATCGAAAG TERM 3215 3880810 - 3880841 + r 95 -15.2 -3.39216 | opp_overlap 3880805 3880807, overlap 3880809 3880811 3880840 CTTACCAAGACAGGT TGAGCCGGACCTGA AATC TCAGGTCCAGCTCG GTTTTTGCATCGAAA TERM 3216 3880811 - 3880840 + r 89 -16.5 -2.63208 | opp_overlap 3880805 3880807, overlap 3880810 3880809 TTACCAAGACAGGTT GAGCCGGACCTGA AATC TCAGGTCCAGCTC GGTTTTTGCATCGAA rplL 3881259 - 3880888 - | 50S ribosomal protein L7/L12 rplJ 3881849 - 3881334 - | 50S ribosomal protein L10 TERM 3217 3882060 - 3882037 - R 100 -13.2 -4.03234 | opp_overlap 3882036 3882041 CGTCTCGGACAGAAA GCAAGGCCAA CGTG TCGGCCTTGC CTACTTGACGGGTTG rplA 3882787 - 3882089 - | 50S ribosomal protein L1 TERM 3218 3882181 - 3882167 - G 70 -12.8 -2.87344 | GATCTTTTTCATATA GGCGCC TTT GGCGCC GGTCGGCTTGGCCTT rplK 3883214 - 3882789 - | 50S ribosomal protein L11 nusG 3883893 - 3883318 - | transcription antitermination protein NusG secE 3884254 - 3884057 - | preprotein translocase subunit SecE TERM 3219 3884141 - 3884123 - GH 90 -4.5 -5.31545 | AACAAGAGCAAAAAA CACAGCC GTCAG AGCTGCG AGAATGAAAACCATC RD1_4026 3884199 - 3884291 + | hypothetical protein TERM 3220 3884448 - 3884429 - TR 84 -9.2 -4.23876 | overlap 3884426 GATAAAACTAAAGAA GCCCCGCG GGCC CACGGAGC ATAACCTAAGCGTTC RD1_4027 3887284 - 3884927 - | hypothetical protein TERM 3221 3885771 - 3885783 + g 76 -9.1 -4.11371 | opp_overlap 3885771 3885770 GCCTGATCACCAAAG GCCAC GAA GTGGC TTTTCGAAAGTGTTG TERM 3222 3886273 - 3886261 - G 83 -4.7 -5.10033 | TGAACACAAACAAAA GGCCC GGC GCGCC CACCACGACCCAGTG TERM 3223 3886772 - 3886790 + g 73 -8.8 -3.94746 | GTTGCTTACCCGCAC CGCGAACA ATG TGTCCGCG TTTGGTTCGCTGTAC TERM 3224 3887427 - 3887414 - RH 70 -6.7 -4.21142 | overlap 3887408 ACGGCAACAGACAAA GTGTC GGGC GACAC GTCTGCAACACTTTC RD1_4029 3888536 - 3887586 - | hypothetical protein RD1_4028 3887541 - 3887636 + | hypothetical protein TERM 3225 3888211 - 3888195 - GT 78 -4.4 -4.77036 | gap 1, opp_overlap 3888203, overlap 3888196 TCCGAGGAGTAAAAA GC-GCCA CATG TGGCCGC AATCCAATGCGGCGG RD1_4030 3890200 - 3888545 - | Fe-ABC transporter, permease component RD1_4031 3891279 - 3890197 - | ABC transporter, ATP-binding protein, putative RD1_4033 3892322 - 3891339 - | iron ABC transporter, iron-binding protein, putative TERM 3226 3892628 - 3892654 + r 71 -4.3 -4.63218 | opp_overlap 3892614 TCCGGTGCAGAGGGT CTGCCCGTCGC GCAGA GTGACCTGCAG TTTTGTTGCGGGACC RD1_4034 3893842 - 3892916 - | type I secretion protein TERM 3227 3894098 - 3894060 - R 95 -14.7 -3.66654 | opp_overlap 3894067 3894087, overlap 3894061 3894067 GACCCGAAGCCCAAA CGCAAAACACCGACGGC TTTCG ACCGTCGGTGTTTTCCA ACCCGTATTTTGGGC TERM 3228 3894097 - 3894061 - R 86 -16 -2.79671 | opp_overlap 3894067 3894087, overlap 3894060 3894067 ACCCGAAGCCCAAAC GCAAAACACCGACGGC TTTCG ACCGTCGGTGTTTTCC AACCCGTATTTTGGG TERM 3229 3894091 - 3894067 - R 100 -13.6 -4.35926 | opp_overlap 3894067 3894087, overlap 3894061 3894060 AGCCCAAACGCAAAA CACCGACGGC TTTCG ACCGTCGGTG TTTTCCAACCCGTAT TERM 3230 3894067 - 3894091 + r 95 -12.9 -4.08394 | opp_overlap 3894067 3894061 3894060, overlap 3894087 AGCCCAAACGCAAAA CACCGACGG CTTTCGA CCGTCGGTG TTTTCCAACCCGTAT RD1_4036 3894725 - 3894117 - | hypothetical protein TERM 3231 3894613 - 3894631 + g 73 -10.3 -3.67558 | opp_overlap 3894613 3894612 GACACATTCGACAAT GCTGGGT CCAGC ACCCAGC TTCTTGGCATGTCTG rpoE3 3894856 - 3895332 + | ECF subfamily RNA polymerase sigma factor RD1_4038 3895329 - 3896093 + | hypothetical protein TERM 3232 3896332 - 3896322 - T 70 -3.2 -4.8048 | CTTCCAGACGAAAAA CCAC CAA GTGA GTTAGGAAACCCCGA TERM 3233 3896733 - 3896711 - T 93 -11.9 -4.36127 | overlap 3896712 GTCAAGAACGCAAAA GGGCCGCCC GAAAA GGGCGGCCT CCTACATGAGATCTT TERM 3234 3896732 - 3896712 - T 95 -15.4 -3.20953 | overlap 3896711 TCAAGAACGCAAAAG GGCCGCCC GAAAA GGGCGGCC TCCTACATGAGATCT RD1_4039 3898600 - 3896759 - | hypothetical protein RD1_4040 3898961 - 3898626 - | transposition protein, putative RD1_4041 3899468 - 3899046 - | transposition protein, putative RD1_4042 3901361 - 3899577 - | transposase, putative RD1_4043 3902439 - 3901762 - | hypothetical protein RD1_4044 3902841 - 3903158 + | hypothetical protein TERM 3235 3903246 - 3903234 - f 80 -9.1 -4.07687 | opp_overlap 3903243, overlap 3903242 3903243 AGCGCCTCTTCAAAA TCGGC AAA GCCGA AGGTCGGTTGCTGGC TERM 3236 3903360 - 3903371 + F 80 -4.4 -5.00616 | opp_overlap 3903354, overlap 3903354 GAGAACCCAGATTTG CCAA ATCT TTGG TTTTTTGGGCAGGCG RD1_4045 3904066 - 3904254 + | hypothetical protein TERM 3237 3904261 - 3904285 + T 89 -13.5 -3.54935 | overlap 3904262 TATGCCTGACGCTTT CTGACCGCCCG CCG CGGGCGGTCGC TTTAAGCCGAATTTG TERM 3238 3904262 - 3904284 + T 91 -17 -2.7264 | overlap 3904261 ATGCCTGACGCTTTC TGACCGCCCG CCG CGGGCGGTCG CTTTAAGCCGAATTT TERM 3239 3904739 - 3904762 + T 100 -10.2 -5.01732 | overlap 3904726 3904750 AACTCCAGCCCACTG GCCCGGCGTT TCCC GACGCCAGGC TTTTTTGCGCGGGTT TERM 3240 3904930 - 3904958 + T 83 -6 -4.87665 | gap 1, opp_overlap 3904935 ACCTGTTCAATCGCA GGCAATTCGCCGA GTTT TTGGCGAAG-GCC TTTTTATGACTGCAA TERM 3241 3905054 - 3905040 - T 73 -5.7 -4.41956 | overlap 3905034 AGAGACATAGCAAAA CGTGT CCATT ACACG ATCTGCAGGTCCTTA TERM 3242 3905168 - 3905149 - T 100 -9.2 -5.12707 | opp_overlap 3905149 3905150, overlap 3905150 CGAAAGTTCAAAAAA GTGCCGCC CGAA GGCGGCAA TTTGGCAAATCGTTG TERM 3243 3905150 - 3905167 + T 76 -12.7 -2.73619 | opp_overlap 3905149 3905150, overlap 3905149 GAAAGTTCAAAAAAG TGCCGCC CGAA GGCGGCA ATTTGGCAAATCGTT TERM 3244 3905167 - 3905150 - T 86 -12.7 -3.6654 | opp_overlap 3905150 3905149, overlap 3905149 GAAAGTTCAAAAAAG TGCCGCC CGAA GGCGGCA ATTTGGCAAATCGTT RD1_4046 3906758 - 3905208 - | hypothetical protein TERM 3245 3906058 - 3906089 + g 89 -7.2 -5.02074 | CCTTTGCGGCTCGCA GCATCCCACATGTC TTCC GTCATGTCGGCTGC TTTTTTGCCGGGTCC RD1_4047 3907726 - 3906758 - | transposition protein, putative RD1_4048 3909936 - 3907729 - | transposase, putative RD1_4050 3910191 - 3910030 - | hypothetical protein TERM 3246 3910334 - 3910353 + rH 76 -12.2 -3.07113 | overlap 3910325 CAGCTCATGCGAGCC CGCAGTAC TTCG GTACTGCG TTCCATGCGCTCGTG RD1_4051 3911124 - 3910318 - | hypothetical protein RD1_4052 3911106 - 3911207 + | hypothetical protein TERM 3247 3911259 - 3911284 + FH 100 -11.9 -4.77757 | opp_overlap 3911259 3911258 GTCTTTCGAGATAAG TCGCGGTCTGT TGGC GCAGATCGCGA TTTTCATTTTTAGGG TERM 3248 3911375 - 3911389 + FH 91 -7.2 -4.86621 | AACAAACTCACCTCG GGAAAA CTT TTTTCC TTTTTAATTCAGCGT TERM 3249 3911553 - 3911537 - fH 95 -8 -4.88293 | AACGCGAAAAACAAA CCGACT CTTTT AGTCGG AAATTATTCTTCATC TERM 3250 3912035 - 3912046 + FH 74 -3 -4.87803 | CCCTAGATCTCACGT TTTC GCCG GAAA TTTTATTTCGCAGTG TERM 3251 3914422 - 3914391 - g 81 -5.1 -4.87665 | overlap 3914392 CGTGACGGACAAAAA GGGCCAGATCATC CCCGAC GACGACCTGACCG ATTTCGAAAACGTGC hsdM 3912658 - 3914691 + | type I restriction-modification system DNA methylase, putative TERM 3252 3914879 - 3914868 - g 81 -4.4 -4.89393 | GAAAGCCTAGAAAAA TACC AGTT GGTA GAACCCGGCGATTTG TERM 3253 3915879 - 3915841 - g 82 -9.5 -4.30576 | gap 1, overlap 3915873 GCCTCATCACCAAAA CCGACCGCTCCATCGCCC TCCT GCGCGA-AAAGCGGGCGG CGCTGATCACCGCGG RD1_4054 3914688 - 3915932 + | type I restriction-mod TERM 3254 3916736 - 3916720 - g 85 -6.5 -4.84359 | overlap 3916723 3916724 CTATGTCGAGAAAAA GGAGGTC GTG GACCTGC GCGGCAACTGGACGA hsdR 3915929 - 3919132 + | type I restriction-modification system endonuclease, putative RD1_4056 3919394 - 3919495 + | hypothetical protein RD1_4057 3920343 - 3919942 - | hypothetical protein TERM 3255 3920287 - 3920307 + g 70 -3.8 -4.66163 | overlap 3920289 AAGGCACACCGTACC GACAGGGG TTTGT CCCCAGCC TTTTTCGATCGCGCT RD1_4058 3921455 - 3920355 - | hypothetical protein TERM 3256 3921556 - 3921538 - RH 70 -6.6 -4.14739 | overlap 3921539 GGAGCTATTGTAAAA CCAGGCAC CGG GGGCCTGA TCGGACTGCTTCAAC lon 3923752 - 3922652 - | Lon protease, putative TERM 3257 3923443 - 3923473 + gH 70 -3.1 -4.66609 | TGGCGACCGGCAAGC CGCCGCGCAGG GGCGTCAGG CGGGCGCGGTG TTTTTCACTAAGGTG RD1_4060 3923730 - 3923822 + | hypothetical protein TERM 3258 3923993 - 3923969 - TR 100 -16.5 -5.26907 | opp_overlap 3923967 3923966 GAATACAAAAGAAAA CCACCGAAAGC CGT GCTCTCGGTGG CCATTTGATGTGTGT RD1_4061 3926580 - 3924082 - | ribonucleotide reductase, putative TERM 3259 3926963 - 3926935 - g 74 -6 -4.4715 | gap 2 TGGCAAGCGACAAAA CGCGCCCAGACGCC GGA GG-GTCTGC-CGCG TCACGTCACCCGCAT RD1_4062 3926866 - 3927285 + | hypothetical protein hisG 3927984 - 3927292 - | ATP phosphoribosyltransferase catalytic subunit hisZ 3929063 - 3927981 - | ATP phosphoribosyltransferase regulatory subunit hisS 3930619 - 3929060 - | histidyl-tRNA synthetase RD1_4066 3930734 - 3930928 + | hypothetical protein dnaE 3934521 - 3930970 - | DNA polymerase III subunit alpha TERM 3260 3932863 - 3932903 + g 73 -10.6 -3.6707 | gap 2 GAATTTGACCAGTCC TGCCTGTTCCACCCATTTCA TGT TGAACTGGGTGG--CGGGCA TTTCGGATCTTGGGT TERM 3261 3933069 - 3933091 + g 75 -8.4 -4.18018 | gap 1, overlap 3933064 TGGCCTCTTCGCGCA GGCGC-GGC TCATCC GCCAGCGCC TTTTCGATCGACACA xdhA 3934745 - 3936118 + | xanthine dehydrogenase, A subunit TERM 3262 3936834 - 3936813 - g 77 -10.9 -3.63744 | gap 1, opp_overlap 3936813, overlap 3936811 3936815 3936820 TTTCGGCGGAAAAGA GAGCCAAGGC AAC GCCTTGGC-C GTTGCCTGCGCCGTG TERM 3263 3936833 - 3936815 - g 86 -14.6 -3.39908 | opp_overlap 3936813, overlap 3936813 3936811 3936820 TCGGCGGAAAAGAGA GCCAAGGC AAC GCCTTGGC CGTTGCCTGCGCCGT TERM 3264 3937131 - 3937119 - g 78 -6.9 -4.65933 | CAGGCTGAAAACAAA CACGC AAA GCGCG ACGGCCTTTCGGGGG TERM 3265 3937420 - 3937410 - g 81 -8.2 -4.72272 | overlap 3937411 CCGCTGGATCAAAAA GGGC ATC GCCC TGACACCGGTCAAAT xdhB 3936115 - 3938412 + | xanthine dehydrogenase, B subunit xdhC 3938412 - 3939344 + | xanthine dehydrogenase accessory factor RD1_4071 3939341 - 3940855 + | sugar ABC transporter, ATP-binding protein, putative TERM 3266 3941583 - 3941615 + G 78 -10.6 -3.86897 | gap 2, opp_overlap 3941602, overlap 3941583 GCTCGGCTTTGCCAT C-CGCGTCAC-CGGTG AAG CACCGCGTGCCGCGCG TTTCTCCGGCGTGAA RD1_4072 3940897 - 3941979 + | sugar ABC transporter, permease protein RD1_4073 3941979 - 3942899 + | sugar ABC transporter, permease protein, putative RD1_4074 3942953 - 3944029 + | basic membrane protein, putative TERM 3267 3944078 - 3944056 - g 95 -11.2 -4.65933 | opp_overlap 3944056 CACTTTGAAAACAAA GCCTCGGAGA ACC CCTCCGGGGC TTTTTTCATGTACAA TERM 3268 3944056 - 3944078 + G 100 -12.7 -5.21709 | opp_overlap 3944056 CACTTTGAAAACAAA GCCTCGGAG AACCC CTCCGGGGC TTTTTTCATGTACAA RD1_4075 3944038 - 3944145 + | hypothetical protein TERM 3269 3944276 - 3944288 + G 71 -7.7 -4.07568 | GCCCAATCCTTGAAG GTTGC CCA GCAAC TTTTGGAAGAGGGCG RD1_4076 3944210 - 3944620 + | universal stress family protein, putative TERM 3270 3944631 - 3944647 + T 95 -10.8 -4.59773 | GGTGATATCGACGGG GGGGGC GCTTA GCCCCC TTTTTCCGGATGGCA TERM 3271 3944966 - 3944945 - T 91 -7.2 -4.88067 | opp_overlap 3944946, overlap 3944946 ACCGATCGATAAAAA GGCAGCCC CCTTGC GGGCTGCT TTTTGTTTTCAGTAG TERM 3272 3944965 - 3944946 - T 74 -10.7 -3.52117 | opp_overlap 3944946, overlap 3944945 CCGATCGATAAAAAG GCAGCCC CCTTGC GGGCTGC TTTTTGTTTTCAGTA TERM 3273 3944946 - 3944965 + T 100 -10.7 -5.48213 | opp_overlap 3944946 3944945 CCGATCGATAAAAAG GCAGCCC CCTTGC GGGCTGC TTTTTGTTTTCAGTA gsh 3946345 - 3944975 - | glutamate-cysteine ligase TERM 3274 3945632 - 3945620 - G 74 -3.3 -4.85782 | CTCCTCAAAAACAAA GGGGA GCA TGCCC GTACGTGCCGCATCC TERM 3275 3945756 - 3945724 - G 70 -3.2 -4.58395 | opp_overlap 3945745 3945746, overlap 3945725 GTGAGTTCGCAAAAA GGGCCGTCGCAACG GGCTG CAACGCGAGGGCCA CGCGCATTTTCTGCA TERM 3276 3946343 - 3946363 + g 70 -3.9 -4.70169 | overlap 3946348 AGACTGAGGAATAGA CATAGGGGG AGG CTCCGTGTG TTTTGTTCACTGTGA RD1_4078 3946932 - 3946411 - | hypothetical protein TERM 3277 3946556 - 3946545 - G 71 -7.2 -4.22346 | CAAAGGCATCGAAAA GGGC CTCC GCCC CTTCGGCATTCACCG RD1_4079 3947062 - 3947685 + | hypothetical protein TERM 3278 3948412 - 3948429 + G 73 -4.7 -4.72272 | opp_overlap 3948410, overlap 3948413 TTTGGGGACAAGACC CCGGCGT GGTT GCGCCGC TTTTTGATGGCGACC ubiA 3947707 - 3948669 + | prenyltransferase TERM 3279 3949781 - 3949768 - g 73 -4.5 -4.72272 | opp_overlap 3949768, overlap 3949770 TTGCCCGATGAAAAA GACAG CGGC CCGTC TGAATTCATCGCAAC RD1_4081 3948730 - 3950607 + | OmpA domain-containing protein RD1_4082 3950642 - 3950971 + | hypothetical protein RD1_4083 3951433 - 3950984 - | universal stress family protein, putative TERM 3280 3951106 - 3951159 + g 70 -3.8 -4.61873 | gap 2, opp_overlap 3951106, overlap 3951106 3951106 3951109 TCAGGTCTGAATCAA CGC-TGTTGGCGTATTCGAT-CAGCG ATTT CGCTGCATCGCCTTCGCCCACATGGG TTTTGATTTCTCCCG moaE 3951966 - 3951523 - | molybdopterin converting factor, subunit 2 moaD 3952215 - 3951970 - | molybdopterin converting factor, subunit 1 pgsA 3952880 - 3952212 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 3281 3953122 - 3953107 - R 91 -11.8 -4.12942 | opp_overlap 3953098 3953097, overlap 3953098 3953108 CGAAATGCGCCAAAA GCGCGC GTTT GCGCGC AGCGCCGACGCCCGG RD1_4089 3955929 - 3955150 - | short chain dehydrogenase RD1_4090 3956899 - 3955952 - | sodium/calcium exchanger protein, putative RD1_4091 3957871 - 3957074 - | S49 family peptidase putative RD1_4092 3958701 - 3957940 - | ABC transporter, permease protein, putative RD1_4093 3959636 - 3958698 - | ABC transporter, ATP-binding protein, putative TERM 3282 3960604 - 3960616 + G 74 -6.9 -4.38712 | TTTGAATATGTCGGG CTGCC TCT GGCGG TTTTCTGGGGCTGGC TERM 3283 3960748 - 3960727 - g 88 -7.1 -4.87626 | overlap 3960729 CGCGAACAGCAAAAA GCCCGCGTG GTGG CGCGCGGCC CGATCAAACGTCAAT RD1_4094 3959788 - 3960765 + | integral membrane protein, putative RD1_4095 3961114 - 3960752 - | hypothetical protein RD1_4096 3962087 - 3961125 - | oxidoreductase, putative TERM 3284 3962002 - 3961966 - G 80 -10.9 -3.73775 | TTGATTGCCAGCAAA TCGCCAAAGTTCAGACC GCA GGTATGCACCTTGACGA CAACCTGCCCGGCCC TERM 3285 3962151 - 3962171 + H 75 -6.7 -4.4261 | TGCGTATTTGCAAGG GGCGCGGCG GGG TGATGCGCC TTTTGGTCTTGGCAA TERM 3286 3962702 - 3962689 - g 70 -3.8 -4.63542 | opp_overlap 3962689 3962698 CAGAACCTCGAAAAA TGGG GATATG CCCA TGTGATGGACTCGTT RD1_4097 3962239 - 3962922 + | hypothetical protein RD1_4098 3966190 - 3962978 - | oxidoreductase, putative TERM 3287 3964679 - 3964663 - G 78 -6.5 -4.5954 | CCAGACCAGACAAAA GCAACAG GGG CGGTTGC AACACCTCGCCGTCC TERM 3288 3965332 - 3965348 + g 78 -6.5 -4.65263 | opp_overlap 3965332, overlap 3965328 3965334 CGGTGCCATAGCCAA CCCACCA AGC TGGTGCG TTTGTTTTCAGCCAT RD1_4099 3967911 - 3966316 - | GMC family oxidoreductase TERM 3289 3967036 - 3967068 + g 89 -6.9 -5.08169 | overlap 3967026 ACGCGCCTGCAAATG GTCCTGCAGGTTCTT GCC AACACCCGGCAGGGC TTTTTTGACCTCTAT TERM 3290 3967162 - 3967134 - G 71 -6 -4.33274 | gap 1, overlap 3967135 3967136 CGGACAGCATCAAAA GCTGCGGCGAG TTGATCGC CCCGCCGCA-C AGGATTATCTCACGA RD1_4100 3968020 - 3969252 + | TRAP dicarboxylate transporter, DctP subunit, putative TERM 3291 3969309 - 3969278 - f 100 -15.9 -4.13 | opp_overlap 3969279, overlap 3969279 ACACACAATGAGAAA GGGCCGACCCGAA AAGGCG TTCGGGTCGGCCT TCTTATCTCAAAATA TERM 3292 3969308 - 3969279 - f 100 -19.4 -3.06715 | opp_overlap 3969279, overlap 3969278 CACACAATGAGAAAG GGCCGACCCGAA AAGGCG TTCGGGTCGGCC TTCTTATCTCAAAAT TERM 3293 3969279 - 3969308 + F 100 -19.4 -3.885 | opp_overlap 3969279 3969278 CACACAATGAGAAAG GGCCGACCCGAA AAGGCG TTCGGGTCGGCC TTCTTATCTCAAAAT RD1_4101 3969369 - 3970037 + | TRAP dicarboxylate transporter, DctQ subunit, putative RD1_4102 3970037 - 3971398 + | TRAP dicarboxylate transporter, DctM subunit, putative TERM 3294 3971988 - 3971999 + G 76 -7.2 -4.57569 | opp_overlap 3971995 AGAGCTTGACCTGAC CCGC AAAC GCGG TTTTTCCACGGATGA iclR 3971416 - 3972195 + | acetate operon repressor, putative RD1_4104 3973043 - 3972246 - | transglutaminase-like superfamily protein, putative RD1_4105 3973984 - 3973043 - | hypothetical protein TERM 3295 3973961 - 3974009 + g 71 -5.3 -4.36914 | gap 1, opp_overlap 3973961, overlap 3973963 AAACATCCAATATAA GCCACCTGCGGTTTTGCCCAGC ATATCA GCTCTCCAAAACC-CAGGTGTC TTTTGTGCCGCCACC RD1_4106 3975431 - 3973986 - | hypothetical protein TERM 3296 3975382 - 3975393 + g 73 -4.4 -4.68607 | TCCCCTGCCGTCATC TCAC TGAA GTGA TTTATCTTTTTTGTC RD1_4107 3976013 - 3975543 - | hypothetical protein TERM 3297 3975915 - 3975898 - G 76 -14.1 -3.05022 | TTTTCCAGAGACACA CGCCCGG TCAA CCGGGCG ACCGGCTGCCCCTCG RD1_4108 3976557 - 3976111 - | hypothetical protein RD1_4109 3977105 - 3976677 - | universal stress family protein, putative RD1_4110 3979702 - 3977102 - | TRAP transporter, 4TM/12TM fusion protein, putative TERM 3298 3979119 - 3979144 + g 74 -6.1 -4.57569 | overlap 3979121 3979123 CCGAACACCCCTTCG GTCGTGAGCCA CATA TGGCTCATCGC TTTTTCGAAGGATGC TERM 3299 3979750 - 3979780 + r 100 -13.8 -4.11216 | overlap 3979751 TTGTTTTTATTCTGG GTGGCCCCGGCACG CCG CGCGCCGGGGCCCG TTTTGAGCATCGCAG TERM 3300 3979751 - 3979779 + r 100 -17.3 -3.06515 | overlap 3979750 TGTTTTTATTCTGGG TGGCCCCGGCACG CCG CGCGCCGGGGCCC GTTTTGAGCATCGCA RD1_4111 3980766 - 3979798 - | immunogenic protein, putative TERM 3301 3982478 - 3982456 - g 89 -11.9 -4.27316 | overlap 3982457 GTCGCCAACTCAAAA CCGCGCGCG ATCTG CGCGCGCTG CCGCTGCATGCGGAA TERM 3302 3982475 - 3982457 - g 74 -13.1 -3.16068 | overlap 3982456 TCGCCAACTCAAAAC CGCGCGC GATCT GCGCGCG CTGCCGCTGCATGCG TERM 3303 3982637 - 3982647 + G 72 -2.4 -4.7497 | overlap 3982624 3982623 CCGTGCCGCCCATGA GGGC GCC GCCA TTTTTGATGCATCCC RD1_4112 3981204 - 3983594 + | sarcosine dehydrogenase, putative RD1_4113 3983698 - 3985038 + | hypothetical protein RD1_4114 3986195 - 3985056 - | BlaR1 peptidase M56 domain-containing protein TERM 3304 3985785 - 3985745 - G 72 -11.2 -3.28791 | gap 1, opp_overlap 3985731 3985731, overlap 3985731 3985746 3985775 AGCTGCCCCGCACAA TCCGGCGCAGACTTGTCAT GGAT ATGACAAGGC-GCGCCAGC CCGGTGACAAAACCG TERM 3305 3985784 - 3985746 - G 76 -14.7 -2.57132 | gap 1, opp_overlap 3985731 3985731, overlap 3985731 3985745 3985775 GCTGCCCCGCACAAT CCGGCGCAGACTTGTCAT GGAT ATGACAAGGC-GCGCCAG CCCGGTGACAAAACC RD1_4115 3986577 - 3986179 - | transcriptional regulator, putative RD1_4116 3987056 - 3986658 - | hypothetical protein RD1_4117 3987853 - 3987056 - | sugar ABC transporter, permease protein, putative RD1_4118 3988713 - 3987850 - | sugar ABC transporter, permease protein, putative RD1_4119 3989783 - 3988710 - | sugar ABC transporter, ATP-binding protein, putative ugpC 3990847 - 3989783 - | SN-glycerol-3-phosphate transport ATP-binding protein TERM 3306 3990902 - 3990877 - R 100 -15.5 -3.53012 | gap 1, opp_overlap 3990874 3990877 CCTCGGTCCTTGAAA CCGGAGCA-CCG CAT CGGATGCTCCGG TAGTGTTCCGTGGCC TERM 3307 3990877 - 3990902 + r 86 -15.5 -2.75992 | gap 1, opp_overlap 3990877, overlap 3990874 CCTCGGTCCTTGAAA CCGGAGCA-CCG CAT CGGATGCTCCGG TAGTGTTCCGTGGCC TERM 3308 3990909 - 3990939 + r 95 -14 -3.22409 | overlap 3990932 ATGCTCCGGTAGTGT TCCGTGGCCCCG CCCGTCA CGAGGCCACGGA TTGGCTTACTGGTTC RD1_4122 3992678 - 3990945 - | sugar ABC transporter, periplasmic sugar-binding protein, putative RD1_4123 3992925 - 3992779 - | hypothetical protein TERM 3309 3992935 - 3992908 - G 78 -10.6 -3.92659 | gap 1, overlap 3992902 3992910 GGCGCAAAAGCCAAA CA-GGCGCGCATG GGT CATCCGCGCCGTG CCGTGCGACGAAACG TERM 3310 3992932 - 3992910 - G 86 -13.4 -3.54879 | overlap 3992908 3992902 CGCAAAAGCCAAACA GGCGCGCATG GGT CATCCGCGCC GTGCCGTGCGACGAA TERM 3311 3993218 - 3993206 - g 70 -3.3 -4.62783 | overlap 3993207 3993215 GATTCATTTGAAAAA TGGCT GAA AGCCG CGAAACACTGCCGAT RD1_4124 3993146 - 3993241 + | hypothetical protein TERM 3312 3993407 - 3993391 - g 84 -5.7 -4.90296 | opp_overlap 3993403 AAAATGTCATAAAAA CCGGCAC CTT GGGCCAG AGCGTTCTGGCTTTT TERM 3313 3993403 - 3993418 + G 76 -9 -4.08394 | opp_overlap 3993391 AAACCGGCACCTTGG GCCAGA GCGT TCTGGC TTTTGAAAACAGTCT TERM 3314 3993944 - 3993962 + G 73 -9.6 -3.85817 | CATGGATGTCTTTGG TGAGGTGC TGG GCATCTCA TTTGTCGAGACGAGT TERM 3315 3996705 - 3996753 + G 81 -14 -3.33492 | gap 1, opp_overlap 3996700 3996743 GTGGAGGATATCGGC TGG-CTGGCCATTGCCGAAGG CTCGCACA CCCTCAGCAATGGCCAGACCA TTGTCGCGTCAATAG RD1_4125 3993369 - 3997274 + | VBCS repeat-containing protein RD1_4127 3997286 - 3997435 + | hypothetical protein potD 3998447 - 3997419 - | spermidine/putrescine ABC transporter, periplasmic substrate-binding protein TERM 3316 3998521 - 3998507 - gR 76 -5.7 -4.64076 | opp_overlap 3998512, overlap 3998502 AATCAAAGCAGAAAA TCGCA GGTTT TGCGA CCTTCAATGAAAAAT RD1_4130 3998679 - 3998494 - | hypothetical protein RD1_4129 3998476 - 3998592 + | hypothetical protein TERM 3317 3999551 - 3999577 + G 70 -3.7 -4.67011 | gap 1, overlap 3999558 GTGACAATCAAATCA CGTG-ACGGCAC CCGC GTGCTGTGTGCG TTTTTAAATGGCCTT TERM 3318 3999681 - 3999671 - g 74 -6.8 -4.4009 | CCTGAGCGGATAAAA CTGC GCA GCAG CAAGGTTGAAACAGA RD1_4131 3998798 - 3999889 + | polyamine ABC transporter, ATP-binding component, putative TERM 3319 4000160 - 4000209 + G 70 -10.8 -3.53563 | gap 3, overlap 4000162 4000200 4000200 TTACGATCTTCTGGC GCTCGATCTGGCAGGCAG-GGCTGG CGA CCATCCTCAGCCTGCT-GATCG-GC TTTCCGACCGCCTAT TERM 3320 4000252 - 4000266 + G 81 -5.6 -4.73388 | opp_overlap 4000252 CGCCCTGCAAATGTA CGCCCG CTC TGGGTG TTTTTGATCACCATT TERM 3321 4000625 - 4000658 + G 80 -10.9 -3.79251 | CCTCTTTGGGCGCGT TTCTCGCCCCCGACC TGCT GGGCGGGGCCAAGAA TTTCATGATCGGCTC potB 3999889 - 4000815 + | spermidine/putrescine ABC transporter, permease protein TERM 3322 4001250 - 4001262 + G 71 -6.2 -4.29845 | GTTGACCATTCTGCT GGCG CATAT CGCC TTTTGCATTCCCTTC potI 4000819 - 4001628 + | putrescine transport system, permease protein, putative TERM 3323 4001947 - 4001935 - g 71 -9.1 -3.73224 | GCATGGCGGATGAAA TCGCC GAA GGCGA GCGCAAGAACATGAA RD1_4134 4001646 - 4002680 + | spermidine/putrescine ABC transporter, periplasmic substrate-binding protein TERM 3324 4002733 - 4002678 - f 91 -11.8 -4.21319 | gap 1, overlap 4002680 ACCAACCTCAAGAAA TAGGGACAC-TGGCACCGGGCGCTGCA TCC TGCACCGCCCGATGCCACGCATGCCGG AGAAAGACCCCAGAT TERM 3325 4002731 - 4002680 - f 100 -18.8 -3.70139 | gap 1, overlap 4002678 CAACCTCAAGAAATA GGGACAC-TGGCACCGGGCGCTGCA TCC TGCACCGCCCGATGCCACGCATGCC GGAGAAAGACCCCAG TERM 3326 4002781 - 4002771 - g 70 -3.2 -4.71061 | overlap 4002778 ATCTATACGGAAAAA CACA AAC TGCG CGACGCCAAGACGGA TERM 3327 4002888 - 4002874 - g 74 -11.4 -3.53091 | opp_overlap 4002860 ATCGCGTCCGCGAAA CCGGTC TGG GACCGG TCAGCGATCCCGATG TERM 3328 4002968 - 4002992 + G 73 -10 -3.57144 | gap 1 ATTTCTGAAAACGGC CCCCGCGCGCT GGAA AGTG-GCGGGG TTTAACGGTGAGGCG TERM 3329 4003123 - 4003167 + G 72 -13.4 -2.54574 | overlap 4003122 4003119 4003160 CGGAGGGCACATGGG AGGCCGCCTACGCCAGTGCG CAGGT CGCACTGACAGGGGCGGCCC GTATTCGTTCCGGTG aphA 4002747 - 4003784 + | acetylpolyamine aminohydrolase RD1_4136 4005125 - 4003830 - | monooxygenase, putative TERM 3330 4004438 - 4004452 + g 71 -9.2 -3.7108 | overlap 4004439 TGGTCACATGTTCGG TCCCCG GAC CGGGGG TTTGCATGTCCCACT RD1_4137 4005284 - 4005400 + | hypothetical protein RD1_4138 4005403 - 4005819 + | endoribonuclease L-PSP family protein, putative TERM 3331 4005977 - 4005947 - g 82 -9.6 -4.36914 | opp_overlap 4005962, overlap 4005950 GGTTGCTTCACAAAA CATCACCGACCCCA GTC TGGGGCCGCTGGCG CTGGATTTGATGGCG TERM 3332 4005974 - 4005950 - g 70 -12.1 -2.8733 | opp_overlap 4005962, overlap 4005947 TGCTTCACAAAACAT CACCGACCCCA GTC TGGGGCCGCTG GCGCTGGATTTGATG RD1_4139 4005816 - 4006490 + | hypothetical protein RD1_4140 4006689 - 4007624 + | LysR family transcriptional regulator tmd 4007731 - 4009137 + | trimethylamine dehydrogenase tmd 4009218 - 4009799 + | trimethylamine dehydrogenase argE 4009812 - 4010960 + | acetylornithine deacetylase RD1_4144 4013430 - 4011028 - | hypothetical protein TERM 3333 4012379 - 4012367 - G 71 -6.9 -4.16842 | overlap 4012368 GTCAGCCCGAAGAAA CCGGC AAA GCCGA GGGTCTTGATGTCAG nuo 4015011 - 4013452 - | NADH-ubiquinone/plastoquinone (complex I), putative RD1_4146 4015120 - 4015998 + | LysR family transcriptional regulator ampD 4017125 - 4016067 - | N-acetyl-anhydromuramyl-L-alanine amidase, putative RD1_4148 4018479 - 4017247 - | hypothetical protein TERM 3334 4017968 - 4017935 - G 74 -11.7 -3.53091 | gap 1, opp_overlap 4017934, overlap 4017936 4017938 ATCGTCGCGGTGAAA GCACCGAG-GTGCAGC AGC GCCGCACGCCCGGTGA ATATCTGATTATATC TERM 3335 4017967 - 4017936 - G 77 -15.2 -2.71712 | gap 1, opp_overlap 4017934, overlap 4017935 4017938 TCGTCGCGGTGAAAG CACCGAG-GTGCAGC AGC GCCGCACGCCCGGTG AATATCTGATTATAT TERM 3336 4018412 - 4018390 - G 77 -4 -4.93877 | GGCGATGAAATAAAA CGATGCACCG ATC CAGGCCATCG CGGTGATGACATGCA TERM 3337 4019068 - 4019052 - g 73 -5 -4.62069 | opp_overlap 4019032 4019052 4019056, overlap 4019053 TGCGCATCCGAAAAA TCGCGG ATGTG CCGCGC GTTCTTTGTGCGGCC RD1_4149 4018580 - 4019509 + | LysR family transcriptional regulator RD1_4150 4019917 - 4019564 - | hypothetical protein TERM 3338 4020537 - 4020556 + G 72 -12.8 -3.01712 | opp_overlap 4020505, overlap 4020529 TCGGCACGCCGCCGC GCGGCTGG TATA CCGGCCGC TGTTCAAACAACACC RD1_4151 4020059 - 4021477 + | hypothetical protein TERM 3339 4021846 - 4021876 + G 70 -3.1 -4.63527 | gap 1, opp_overlap 4021833, overlap 4021846 AAGGGTACCTGGCAC GG-CGTGCTCACGC CGCT GCATGCGCCCGGCC TTTTTGCGGTCGTGG allA 4021474 - 4021965 + | ureidoglycolate hydrolase TERM 3340 4022785 - 4022796 + G 78 -7.2 -4.5954 | opp_overlap 4022773 GAATTCACGGTTGCC GCCG TGAT CGGC TTTTGTCTGATGTCC RD1_4153 4022011 - 4023429 + | xanthine/uracil permease, putative TERM 3341 4023549 - 4023514 - T 95 -14 -3.38991 | opp_overlap 4023515 4023521, overlap 4023515 4023521 ACGCCCCGAATAAGA CGCAAAAGGCCCGGTC AGAG GATCGGGCCTTTCGCT TATCCTGCCAATGCC TERM 3342 4023515 - 4023548 + T 100 -17.5 -3.41051 | opp_overlap 4023514 4023515 4023521, overlap 4023521 CGCCCCGAATAAGAC GCAAAAGGCCCGGTC AGAG GATCGGGCCTTTCGC TTATCCTGCCAATGC TERM 3343 4023548 - 4023515 - T 90 -17.5 -2.63073 | opp_overlap 4023515 4023521, overlap 4023514 4023521 CGCCCCGAATAAGAC GCAAAAGGCCCGGTC AGAG GATCGGGCCTTTCGC TTATCCTGCCAATGC TERM 3344 4023521 - 4023542 + T 93 -13.7 -3.82083 | opp_overlap 4023515 4023514 4023521, overlap 4023515 GAATAAGACGCAAAA GGCCCGGTC AGAG GATCGGGCC TTTCGCTTATCCTGC TERM 3345 4023542 - 4023521 - T 91 -11.5 -4.32048 | opp_overlap 4023521 4023515, overlap 4023515 4023514 GAATAAGACGCAAAA GGCCCGGTC AGAG GATCGGGCC TTTCGCTTATCCTGC RD1_4154 4024699 - 4023866 - | hypothetical protein RD1_4155 4025171 - 4024944 - | hypothetical protein RD1_4156 4025603 - 4025178 - | hypothetical protein RD1_4157 4025708 - 4026301 + | TetR family transcriptional regulator TERM 3346 4026328 - 4026384 + T 95 -10.4 -4.62069 | gap 2, opp_overlap 4026316 4026331 4026334, overlap 4026330 4026337 AAATACCTGAGACAC CAAGTATCACGTAACGC-GT-TGAAATC TCT GATTTCAGGCAGCGTTACGTGATTCAGG TTTTTCGCATGACGC TERM 3347 4026381 - 4026331 - T 84 -12.9 -3.32498 | gap 2, opp_overlap 4026330 4026328 4026337, overlap 4026316 4026334 TACCTGAGACACCAA GTATCACGTAACGC-G-TTGAAATC TCT GATTTCAGGCAGCGTTACGTGATTC AGGTTTTTCGCATGA TERM 3348 4026378 - 4026334 - T 79 -13.2 -2.83345 | gap 2, opp_overlap 4026330 4026328 4026337, overlap 4026331 CTGAGACACCAAGTA TCACGTAACGC-G-TTGAAATC TCT GATTTCAGGCAGCGTTACGTGA TTCAGGTTTTTCGCA RD1_4158 4027498 - 4026554 - | hypothetical protein TERM 3349 4026927 - 4026909 - G 76 -5.9 -4.67607 | GTCTGAACAAAGAAA GGTGCCT TGACG AGGCCCC GATCCGCAAAATGCG TERM 3350 4027062 - 4027051 - G 73 -4.4 -4.62872 | ACGAATTGCGAAAAA CCAA ATCT TTGG AACCTTCCAGATGGG fabG 4028321 - 4027512 - | 3-ketoacyl-(acyl-carrier-protein) reductase RD1_4160 4029890 - 4028895 - | 3-hydroxyacyl-CoA dehydrogenase TERM 3351 4029810 - 4029791 - G 78 -4.2 -4.83615 | gap 1 CAGCGCGCAGAAAAA CGGTC-GCC CAA GCCTGACCG ATAAGGCCACACCCA TERM 3352 4030340 - 4030396 + r 95 -10.4 -4.62069 | gap 2, opp_overlap 4030339 4030340, overlap 4030342 4030349 AAATACCTGAAACAT CGAGTATCACGTAACGC-GT-TGAAATC CTT GATTTCAGGCAGCGTTACGTGATTCAGG TTTTTCGCATGACGC RD1_4161 4031038 - 4030442 - | hypothetical protein TERM 3353 4031210 - 4031223 + r 71 -9.5 -3.56594 | opp_overlap 4031208 CGCGTCGAAGAATTG CGGGC CAAA GCCCG TTTCGAAGGCTTTCC TERM 3354 4031581 - 4031556 - R 95 -14.7 -3.56643 | GGTACAGGCTTGAAA CTGGCCCGCCC CATC GAGCAGGCCAG TAGAGTTATTCCGGC RD1_4162 4032080 - 4031598 - | acetyltransferase, putative TERM 3355 4032720 - 4032710 - R 77 -8.2 -4.13014 | overlap 4032711 TTCACAGCGGCAAAA GCGG AGG CCGC CCGCCAATTTACACA cysG 4034126 - 4032729 - | siroheme synthase RD1_4165 4034416 - 4034123 - | hypothetical protein nasA 4036989 - 4034413 - | nitrate reductase TERM 3356 4034831 - 4034846 + g 76 -5.4 -4.66833 | overlap 4034832 TGCCGCGCCTCGGTT TCCCAA TCGC TTGGGG TTTTTGCACTTGCCA TERM 3357 4036070 - 4036052 - G 93 -8.1 -4.96848 | gap 1 CCGGTGACAGAAAAA GGC-CCCG CCCC CGGGTGCC CGATGCGGCCCGTCG TERM 3358 4036733 - 4036718 - G 78 -2.4 -5.01535 | CCAGAAGCATAAAAA GCCACA CTTT CGGGGC CATGTTCAGCAATCG nirD 4037321 - 4036986 - | assimilatory nitrite reductase, small subunit TERM 3359 4037035 - 4037013 - G 74 -6.3 -4.56597 | gap 1, opp_overlap 4037012, overlap 4037030 4037031 CCGCGCCCGCAAAAA GGCGCGATCC AGCA GAAT-GCGCC CATTTTCAACGCGCG nirB 4039744 - 4037318 - | assimilatory nitrite reductase, large subunit TERM 3360 4038594 - 4038571 - G 70 -4.7 -4.56775 | gap 1 AGGCGGGGCCAAAAA TCAGCG-TAT CGCGC ATATCGCTGA TATCGACCTTGTCAC nasD 4041408 - 4039750 - | nitrate ABC transporter protein, ATP binding component nasE 4042487 - 4041414 - | nitrate ABC transporter, permease component TERM 3361 4042532 - 4042518 - R 78 -7 -4.56597 | opp_overlap 4042524 4042527, overlap 4042519 GCTGCTTTTGAAAAA GGGGGC GGT GCCCGC CGCGCGGCGACGCTG TERM 3362 4042524 - 4042557 + r 70 -9.3 -3.76839 | opp_overlap 4042518 4042519, overlap 4042527 TTTGAAAAAGGGGGC GGTGCCCGCCGCGCG GCGA CGCTGGGCGGGCTGC TTTGACTTAGCCTTG TERM 3363 4042527 - 4042554 + r 86 -14 -2.9732 | opp_overlap 4042518 4042519, overlap 4042524 GAAAAAGGGGGCGGT GCCCGCCGCGCG GCGA CGCTGGGCGGGC TGCTTTGACTTAGCC nasF 4043934 - 4042564 - | nitrate transporter substrate-binding TERM 3364 4042941 - 4042953 + g 76 -6.2 -4.66833 | TGAAGTCTGGTGCGG GGCG CACGT CGCC TTTTTCGAATTCGAA TERM 3365 4043975 - 4044022 + r 100 -17.8 -3.92324 | opp_overlap 4043975 AGGGAAAACAAAAAA GCCGCACGTAGAGATCACGG GGGGAGGA CCGTGGTCTATACGAGCGGC TTTGCTCTTGGGAGG TERM 3366 4044022 - 4043975 - R 100 -15.6 -5.80951 | opp_overlap 4043975 AGGGAAAACAAAAAA GCCGCACGTAGAGATCACGG GGGGAGGA CCGTGGTCTATACGAGCGGC TTTGCTCTTGGGAGG TERM 3367 4044105 - 4044147 + r 70 -3.4 -4.7373 | gap 2, opp_overlap 4044104, overlap 4044106 4044107 4044109 GTTACGATGAACCAG CGCATGCGAC-GCGC-GCAA TCTTT TTGCTGCGCCGCCGCATGAA TTTTTACTGCAATGC nasS 4045325 - 4044192 - | nitrate transport ATP-binding protein TERM 3368 4044498 - 4044478 - G 80 -3.2 -5.12707 | gap 1, opp_overlap 4044478, overlap 4044480 TGAAACTGCAAAAAA CG-GCCCAC GGGT GTGGGAGCG GTATTTCGTTTGGTG nasT 4045906 - 4045322 - | response regulator NasT RD1_4175 4046794 - 4046303 - | hypothetical protein RD1_4176 4047367 - 4046852 - | hypothetical protein RD1_4177 4048050 - 4047436 - | hypothetical protein RD1_4178 4048571 - 4048119 - | hypothetical protein RD1_4179 4049251 - 4048568 - | hypothetical protein RD1_4180 4049936 - 4049271 - | methyltransferase, putative RD1_4181 4050040 - 4050954 + | LysR family transcriptional regulator RD1_4182 4051131 - 4051021 - | hypothetical protein RD1_4183 4051105 - 4051521 + | hypothetical protein RD1_4184 4051518 - 4051982 + | hypothetical protein TERM 3369 4052135 - 4052150 + GF 74 -7.5 -4.19276 | TCCTGTTTATTTTTC CCGCC CCAAGC GGCGG TTTTGGCAGTTTTGC RD1_4185 4051942 - 4052400 + | hypothetical protein RD1_4186 4052718 - 4054634 + | sodium/solute symporter RD1_4187 4054621 - 4054788 + | hypothetical protein hmuS 4055047 - 4056102 + | hemin transport protein hmuT 4056099 - 4056959 + | hemin ABC transporter, periplasmic hemin-binding protein RD1_4190 4056880 - 4058031 + | hemin ABC transporter, permease component, puative hmuV 4058033 - 4058818 + | hemin importer ATP-binding subunit RD1_4192 4059065 - 4059376 + | hypothetical protein TERM 3370 4059387 - 4059424 + F 70 -5.3 -4.386 | opp_overlap 4059389 4059390, overlap 4059391 TGTGATCTTCGACAA TAGTGTCCGGTGCGCCG AATT CTGCGCTCCGGGCTTGA TTTTCTGCACAGTTA TERM 3371 4059391 - 4059420 + F 86 -12.7 -3.75115 | opp_overlap 4059390 4059389, overlap 4059387 ATCTTCGACAATAGT GTCCGGTGCGCCG AATT CTGCGCTCCGGGC TTGATTTTCTGCACA hugA 4059564 - 4061681 + | heme transport protein TERM 3372 4062188 - 4062170 - g 86 -13.8 -3.45023 | opp_overlap 4062170 GGATCACGATCAGAA CCCCGGCG TCC CACCGGGG TGTCGTAACAGGCGA TERM 3373 4062956 - 4062968 + G 77 -3.3 -5.0133 | AAGCGGAAGCAGGCC GCAAC ATG GATGC TTTTTTCAGCCAATC pepN 4061785 - 4063710 + | aminopeptidase, putative RD1_4195 4063946 - 4064347 + | hypothetical protein RD1_4196 4064344 - 4065018 + | MotA/TolQ/ExbB proton channel family protein RD1_4197 4065011 - 4065367 + | hypothetical protein RD1_4198 4065364 - 4065738 + | hypothetical protein RD1_4199 4065735 - 4066670 + | hypothetical protein lytT 4067547 - 4066711 - | sensory transduction protein LytT, putative RD1_4201 4067598 - 4068491 + | ABC transporter, ATP-binding protein, putative TERM 3374 4068967 - 4068983 + G 81 -5.1 -4.94992 | overlap 4068970 CGCCCGTGCAGCGGT TCCGGTT GCC AACCTGA TTTTTCTGCCTTTGG RD1_4202 4068488 - 4069207 + | ABC transporter, permease protein, putativ galE 4070260 - 4069247 - | UDP-glucose 4-epimerase TERM 3375 4070405 - 4070391 - g 74 -3.4 -4.75472 | TGCAGATGAACAAAA GCACGG ATG CCTCGC CAAGCGCAACACGTC RD1_4204 4070381 - 4072048 + | hypothetical protein TERM 3376 4073009 - 4072999 - g 74 -5.4 -4.56358 | GACATTGACAGAAAA CGAT CTG ATCG CCCTACGGTCGGACG RD1_4205 4072100 - 4073122 + | NeuB family protein RD1_4206 4073119 - 4074135 + | hypothetical protein TERM 3377 4075443 - 4075427 - g 78 -2.1 -5.10497 | AACTGACGGAAAAAA CCTTGGC AGC GCTGAGG GATGTGGACTACGGC RD1_4207 4074268 - 4075878 + | cytidine 5monophosphate N-acetylneuraminic acid synthetase RD1_4208 4076143 - 4076021 - | hypothetical protein TERM 3378 4077043 - 4077054 + G 81 -5.8 -4.77157 | opp_overlap 4077026, overlap 4077021 ATCGACGTTCGGGTC GCTG ATCG CAGC TTTTTCGTCGCTTCC TERM 3379 4077790 - 4077780 - g 70 -3.2 -4.63527 | GGACCATTTCAAAAA CGTC AAC GACA CCCTCGGGCACGCTG TERM 3380 4077792 - 4077812 + G 80 -3.1 -5.13722 | opp_overlap 4077791, overlap 4077793 AAACGTCAACGACAC CCTCGGGCA CGC TGCCGGGGA TTTTGTTTTGGTGGA RD1_4210 4076920 - 4078983 + | EAL/GGDEF/PAS domain-containing protein RD1_4211 4079830 - 4079150 - | hypothetical protein TERM 3381 4079484 - 4079494 + g 78 -2.4 -5.07486 | AGTCCCCCATCAGAA ACGG CCC CCGC TTTTTCTTCGCGCTG RD1_4212 4079993 - 4079874 - | hypothetical protein RD1_4213 4080197 - 4081492 + | hypothetical protein TERM 3382 4082146 - 4082125 - g 73 -4.4 -4.59773 | overlap 4082103 TTTGACCCTGAAAAA CTGGTGCA GGAGCT TGCAGCAG CGGGCTTCAACCTGC RD1_4214 4081489 - 4082298 + | hypothetical protein TERM 3383 4082541 - 4082529 - f 76 -3.3 -5.0916 | CTCGTAAGAGAAAAA CGACC CTT GGTTG ATGCTCAACGCCAAA RD1_4215 4082802 - 4083293 + | hypothetical protein RD1_4216 4083293 - 4084030 + | hypothetical protein TERM 3384 4084415 - 4084429 + G 72 -2.7 -4.7497 | overlap 4084415 4084416 GCCTTTACGCTTTAC AGCGC CATGC GCGCG TTTTTCCTGAATGGG RD1_4217 4084046 - 4086433 + | hypothetical protein RD1_4218 4086459 - 4086917 + | hypothetical protein TERM 3385 4087202 - 4087183 - g 71 -6.4 -4.21194 | GGCCACGATCGAAAA CGATCTGT CGAA ACCGATCG AACCCAAGGACATTA RD1_4219 4086923 - 4087378 + | hypothetical protein RD1_4220 4087378 - 4087551 + | hypothetical protein TERM 3386 4087739 - 4087723 - g 76 -8.7 -4.07568 | GCGCCCGTCGGAAAA TCCGGCA CCG TGCCGAA ATACTCGATGGCCGA RD1_4221 4087555 - 4088241 + | hypothetical protein RD1_4222 4088249 - 4090015 + | hypothetical protein RD1_4223 4090042 - 4090332 + | hypothetical protein RD1_4224 4090334 - 4090771 + | hypothetical protein RD1_4225 4090775 - 4091722 + | hypothetical protein TERM 3387 4093053 - 4093012 - g 77 -11.5 -3.67792 | gap 1, overlap 4093013 4093046 CCAGACGCACGCAAA CCGGTGCCATGGCCGCCGTC GCC GACC-CGGACAAGGCACCGA AACTGCGCCTGACCC TERM 3388 4093316 - 4093287 - g 70 -3.3 -4.63542 | overlap 4093277 4093289 GACAAGGTCGAAAAA CCCGCGCATCTGC GCCT GCTGCTGGGCCGG ATCGTGACGCTGTCG RD1_4226 4091715 - 4095827 + | hypothetical protein RD1_4227 4095824 - 4096684 + | hypothetical protein TERM 3389 4097759 - 4097772 + G 85 -6.7 -4.72486 | GCAAGTTTTCGCAAT CGCAT GTGG ATGCG TTTTTGCCCTTTGTC TERM 3390 4098423 - 4098436 + G 78 -6.7 -4.64657 | TCTGAGTGACGGGAT GCTCT CGAC AGAGC TTTTTGCACATTTGA RD1_4228 4096681 - 4098939 + | hypothetical protein TERM 3391 4099014 - 4099035 + G 71 -9.3 -3.74693 | GACGCGGCGTTTCAT GTGACCCGG CTGA CCGGGCCGC TTTCGTCGCCTGAAA TERM 3392 4099692 - 4099662 - g 80 -14.7 -3.05596 | overlap 4099636 4099664 CATGCTGCCACGCAA GATGCCCCGTCCG GGCAA CAGTCGGGGCATC CGCAGGCAGGGCAAC TERM 3393 4099764 - 4099739 - g 77 -11.1 -3.63305 | gap 1, opp_overlap 4099759, overlap 4099731 4099740 TACAGAAGCGTCAAA CGCGGCTGCGAC CAC GTCGCCGCCG-G ACATCGCGCGTGATT TERM 3394 4099866 - 4099850 - g 75 -13.7 -2.90688 | opp_overlap 4099848, overlap 4099838 GAAGCATCTGATACA CGGCCTG TTG CAGGCCG GCGTTCCTGGGGCGG TERM 3395 4100098 - 4100082 - g 93 -15.1 -3.75153 | CTGCCCCAAGCCAAA GGCGCGC ATG GCGCGCC AGAGGCGACGAAAGC TERM 3396 4101502 - 4101486 - g 76 -6.5 -4.57073 | opp_overlap 4101500, overlap 4101496 4101500 GACGTGCCGGAAAAA CCGCCTG AAA CAGACAG CGAAACGCTGTTGGT RD1_4230 4098939 - 4102016 + | hypothetical protein RD1_4231 4102009 - 4103352 + | ATPase TERM 3397 4103372 - 4103388 + G 75 -2.9 -4.98255 | overlap 4103374 CCTCAGGACCAGTTT GCGTCAT ATG ATGGCCC TTTTTGTGGTTACCA TERM 3398 4106049 - 4106039 - g 78 -2.4 -5.09225 | overlap 4106043 ATCGGATGCAAAAAA GGAG TTG CGCC TGCGCATGGAAGAGG RD1_4232 4103349 - 4106678 + | hypothetical protein TERM 3399 4108620 - 4108637 + G 70 -4 -4.58395 | opp_overlap 4108608 AAAGCCCGCGATGCG GCGCTG AACATG CTGCGC TTTTTCGAGGATGAA fdhB 4107162 - 4108844 + | formate dehydrogenase, beta subunit TERM 3400 4110072 - 4110047 - g 86 -14.7 -3.41013 | CAACGAGATCGAGAA CGCCGATGTCG CCAT CGTCATCGGCG CGAACCCGGTCGAAA TERM 3401 4110156 - 4110179 + G 76 -10.2 -3.71378 | CTGATCGTGATGGAC CCGCGTGGGC AGGG GCTCAAGCGG TTTGCCTCTCACATG fdhA 4108848 - 4111625 + | formate dehydrogenase, alpha subunit TERM 3402 4111712 - 4111698 - g 70 -3.4 -4.60886 | overlap 4111700 AGAGAAGCAAAGAAA CGCCCG ATC CAGGAG ATTGGCGAAAAGATC TERM 3403 4113205 - 4113217 + G 70 -4.7 -4.49311 | GCGAGGTGCGGTTGT CCGCC GGT GCCGG TTTTGTCGTCGTCGT fhs 4111653 - 4113329 + | formate--tetrahydrofolate ligase folD 4113443 - 4114345 + | FolD bifunctional protein TERM 3404 4114883 - 4114855 - g 76 -9.5 -4.09243 | GAGATCGTCGGAAAA CCGGCCGCCATGA TGC TCATGGCAGAGGG TGCGACGGTCACCGT folD 4114345 - 4115217 + | FolD bifunctional protein RD1_4238 4116163 - 4115318 - | hypothetical protein RD1_4240 4116341 - 4116799 + | globin-like protein, putative RD1_4241 4118083 - 4116806 - | hydroxypyruvate reductase, putative TERM 3405 4117700 - 4117684 - G 76 -10.1 -3.71848 | overlap 4117681 GTGGCGCAGGAAGAA GGGCGGA ACC TCCACCC GAAATCAGCGCAATG mclA 4119047 - 4118070 - | malyl-CoA lyase narP 4119788 - 4119156 - | nitrate/nitrite response regulator protein, putative TERM 3406 4120924 - 4120912 - g 76 -10.5 -3.72695 | ACGCCTTTCACGAAA GCGCG CTG CGCGC CGCCGTGGAGGCGAT RD1_4244 4119999 - 4121240 + | aminotransferase, putative sucC 4121281 - 4122480 + | succinyl-CoA synthetase subunit beta TERM 3407 4122504 - 4122541 + G 71 -7.6 -4.08216 | opp_overlap 4122502 4122504 ATTGATGCAAACACA CCCGTCATCGTGCAGG GCATTA CCGGCAAGATGGCGCG TTTTCACACGGCTGA mtkB 4122477 - 4123370 + | succinyl-CoA synthetase subunit alpha TERM 3408 4124125 - 4124107 - g 78 -10.2 -3.85698 | opp_overlap 4124106 4124109 TGCCTTCCTGATAAA CACCGCGC GGG GCGAGGTG GTTGATGAAAACGCG gyaR 4123370 - 4124362 + | glyoxylate reductase TERM 3409 4124562 - 4124572 + G 71 -6.8 -4.19704 | TACCATCTGGTTTCA CCTG CAG CAGG TTTTGAATGAGGTTC ppc 4124362 - 4126977 + | phosphoenolpyruvate carboxylase TERM 3410 4128112 - 4128094 - g 71 -8 -4.11216 | CTTTGATCCGGAAAA GCCGATGG TGA CCTCCGGC ATCCGTCTGGGCAGC glyA 4127012 - 4128307 + | serine hydroxymethyltransferase TERM 3411 4128340 - 4128375 + T 100 -22 -4.12043 | opp_overlap 4128345, overlap 4128345 GCATGTAGGTTTAGA AAAAAGGCCCGGGGGA ATAT TCCCCCGGGCCTTTTG TTGTTTGGTTCGTTA TERM 3412 4128370 - 4128345 - T 100 -21.9 -5.252 | opp_overlap 4128340 4128345 TAGGTTTAGAAAAAA GGCCCGGGGGA ATAT TCCCCCGGGCC TTTTGTTGTTTGGTT TERM 3413 4128345 - 4128370 + T 100 -21.9 -5.03961 | opp_overlap 4128345, overlap 4128340 TAGGTTTAGAAAAAA GGCCCGGGGGA ATAT TCCCCCGGGCC TTTTGTTGTTTGGTT glnT 4129750 - 4128395 - | glutamine synthetase III TERM 3414 4129818 - 4129845 + r 75 -6.8 -4.46072 | opp_overlap 4129819, overlap 4129819 GAACTGTGATAAAAA ACGCGCAGGCCC GGAT GGAGCTGCGCGC TTTCTGTTTCTTAAA TERM 3415 4129819 - 4129844 + r 71 -10.3 -3.26559 | opp_overlap 4129819, overlap 4129818 AACTGTGATAAAAAA CGCGCAGGCCC GGAT GGAGCTGCGCG CTTTCTGTTTCTTAA TERM 3416 4129844 - 4129819 - R 100 -12.5 -5.25803 | opp_overlap 4129819 4129818 AACTGTGATAAAAAA CGCGCAGGCCC GGAT GGAGCTGCGCG CTTTCTGTTTCTTAA RD1_4251 4131196 - 4129856 - | glutamate synthase family protein, putative TERM 3417 4130927 - 4130897 - G 73 -10.4 -3.58533 | opp_overlap 4130917 GGACAACGCGCCAAA GGACATGCCCGCGA TGG TCACCGGAATGTCC AGTTCGATCGGTTTC RD1_4252 4131890 - 4131207 - | FwdC/FmdC family protein RD1_4253 4132819 - 4131890 - | glutamine amidotransferase, class II putative TERM 3418 4132584 - 4132612 + g 74 -5.9 -4.56597 | overlap 4132564 TCGTTGCGCGTCAGG CTGACCGCCGC GCCCAAA GCCGCGCTCAG TTTTTCGGCCAGACC SEQUENCE gi|115345530|ref|NC_008386.1| Roseobacter denitrificans plasmid pTB1, complete sequence (length 106469) RD1_A0001 799 - 2088 + | hypothetical protein gltS 3301 - 2096 - | sodium/glutamate symporter RD1_A0003 3451 - 3317 - | hypothetical protein opuD 4949 - 3438 - | glycine betaine transporter TERM 1 3680 - 3670 - G 78 -6.8 -4.72272 | CCGCCCGACGAAAAA GTGC CCA GCAC AAAGGCCGCACTGAC TERM 2 4792 - 4782 - G 75 -2.4 -4.88067 | overlap 4784 4787 ACCGATGCAGAAAAA CAGC ATG GCAG AAACCGCCAGCATCA RD1_A0005 6174 - 5140 - | integrase catalytic subunit TERM 3 5371 - 5390 + g 74 -6.4 -4.34402 | GCAGATGCCGTTGGT CTGAGGTG ATTT CACCTTGG TTTTGGTGTGGGCGA RD1_A0006 7359 - 6349 - | hypothetical protein virB11 8723 - 7740 - | type IV secretory pathway, VirB11 component, putative TERM 4 8740 - 8726 - R 74 -7.8 -4.07885 | GAGGGCCGCTCAAAA GACCAG ATC CCGGTC AACAAAGACGGTCAG RD1_A0008 10051 - 8720 - | putative VirB10 protein TERM 5 9676 - 9700 + g 70 -9.9 -3.43564 | opp_overlap 9670, overlap 9679 9687 CCGCGATAAGCTCGT CCAGCTGCGCT TGC AGCGCCGCTAG TTCTGCATTGCCTTC RD1_A0009 10806 - 10051 - | putative VirB9 protein TERM 6 10377 - 10395 + g 70 -10.2 -3.4758 | overlap 10366 10389 CCCGGTCCTGCCGCG CGTGCCGC TCC GCAGCACG TTGCTGTTCTTCATG RD1_A0010 11480 - 10806 - | VirB8 protein RD1_A0011 12716 - 11544 - | putative conjugal transfer protein TERM 7 11736 - 11752 + g 71 -9.3 -3.77588 | GAATTTTTCCTTGTT GAGCCGC ATG GCGGCAC TTGTTGCTCTGGAAT TERM 8 12482 - 12464 - G 80 -14.6 -3.07233 | overlap 12455 TGATAATGTCGAATA TGGGCGCA AAT TGCGCCCA AGTCGTCGCGACCGA RD1_A0012 13175 - 12720 - | hypothetical protein RD1_A0013 13888 - 13178 - | RC163, putative virB4 16379 - 14019 - | VirB4 protein, putative TERM 9 14354 - 14364 + g 74 -5.4 -4.57073 | GGGTCATCAGCATCA GAAC GAC GTTC TTTTTGCGCAGCGTG RD1_A0015 16647 - 16372 - | type IV secretion system protein, putative RD1_A0016 16931 - 16650 - | hypothetical protein RD1_A0017 17629 - 16919 - | transglycosylase, putative RD1_A0018 18087 - 17608 - | hypothetical protein TERM 10 18130 - 18154 + r 86 -7.2 -4.82901 | gap 1 AACACATCACAATCG TCAG-CCTTCG TCGT CGGAGGACTGA TTTTTCTCACCAGGA TERM 11 18508 - 18495 - R 83 -9.5 -4.09243 | opp_overlap 18495 18492 GATATGGGCTTAAAA GCGCC GCTG GGCGC TCGTTCTACGGCGTA RD1_A0019 19340 - 19212 - | hypothetical protein TERM 12 19442 - 19470 + H 72 -2.3 -4.89063 | TGGCAAGTTCGATCT TCTGTTGTCACCG TGG CGGTGGAGGAAGA TTTGTTTTTCAATGA TERM 13 19552 - 19588 + H 85 -2.2 -5.53288 | gap 1, overlap 19554 GACCACCTCCCCCTT CCTGTCG-CAGCTGC GCATCCCG GCAGCTGACGTCGCG TTTTTTTCAATTACC TERM 14 20444 - 20494 + G 76 -6.7 -4.57073 | opp_overlap 20464, overlap 20445 TTGGCGGCGAGGGAC TTCCCGCAATGCCGACCGAAGAC ACAGC GTCCATGGTCGATTTTGCGGGAC TTTTTCCAAACGGTG RD1_A0021 19963 - 21318 + | RC102 TERM 15 22077 - 22060 - g 70 -4.2 -4.46675 | ATGCAAGAGAAGAAA TCTTGA GCACGT TCAAGA ACGCCTACGAGATGA RD1_A0023 21315 - 22337 + | RC101 TERM 16 22460 - 22425 - f 80 -9 -4.19953 | opp_overlap 22425 22430, overlap 22430 GATCTAACGGCAAAA GAAAAGCCCCCAAACC TTGC GGTATGAGAGCTTATC TGTAGTGTTTTGCAG TERM 17 22455 - 22430 - f 91 -7.5 -5.10163 | opp_overlap 22425 22430, overlap 22425 AACGGCAAAAGAAAA GCCCCCAAACC TTGC GGTATGAGAGC TTATCTGTAGTGTTT TERM 18 23379 - 23357 - g 78 -4.8 -4.85599 | overlap 23359 23363 TTCACTTTATAAAAA TATGAACCCC AGC GGGGTCAACA ATGAGCCCCACATAC RD1_A0024 22578 - 23891 + | replication protein C vagC 23967 - 24197 + | virulence associated protein, putative RD1_A0026 24194 - 24616 + | hypothetical protein RD1_A0027 25127 - 24822 - | hypothetical protein RD1_A0028 24837 - 25184 + | hypothetical protein RD1_A0030 26395 - 25181 - | integrase, putative TERM 19 26090 - 26102 + g 71 -9.1 -3.84271 | AAAATGCTTCCAGTC GGCCT TGT AGGCC TTATTGGTGTTCTCG RD1_A0031 26520 - 27482 + | hypothetical protein TERM 20 27813 - 27774 - g 84 -10 -4.25104 | gap 1, overlap 27796 TGTTCCGCACCAAAA CCCA-GTTTGCCGAGGC AATCAAG GCCGCGGCTAACCTGGG TGATCAATCGCTGGC TERM 21 28014 - 28036 + G 82 -11.2 -3.92324 | CGCATACGTTTGTGA CGACGCCGGA GTT TCTGGCGACG TTTGATCTTCAAAGC RD1_A0032 27479 - 28108 + | transcriptional regulator (Ypuh-like), putative TERM 22 28548 - 28530 - g 70 -3.1 -4.71418 | overlap 28543 AAGATGGAAAAGAAA TCCAAGC AAAGA GTTTGGA GATTCCTACGAAGCT RD1_A0033 28518 - 28910 + | hypothetical protein RD1_A0034 28917 - 29300 + | hypothetical protein RD1_A0035 29455 - 32001 + | hypothetical protein TERM 23 32125 - 32142 + G 81 -5.5 -4.77165 | gap 1 GGAACGCATCGCGGA CGGG-GGC TCT GCCATCCG TTTTGTTATCGGGGA RD1_A0036 31979 - 33286 + | hypothetical protein TERM 24 33664 - 33654 - g 78 -6.8 -4.72272 | opp_overlap 33654 GCGCGCGATGAAAAA TCCC AAA GGGA TTCTATTGATCACGC RD1_A0037 33289 - 35469 + | ATP-dependent helicase, putative RD1_A0038 36084 - 35608 - | hypothetical protein RD1_A0039 37270 - 36152 - | 2-methylthioadenine synthetase RD1_A0040 37760 - 37272 - | hypothetical protein TERM 25 37512 - 37486 - G 100 -13.8 -4.65895 | opp_overlap 37486, overlap 37487 GGGTCGACCGAAAAA CCTGGATGAGTG TGC CACTCACCCAGA TAGTTGAAGCGGTGA TERM 26 37511 - 37487 - G 86 -15.1 -3.39216 | opp_overlap 37486, overlap 37486 GGTCGACCGAAAAAC CTGGATGAGTG TGC CACTCACCCAG ATAGTTGAAGCGGTG RD1_A0041 39483 - 37738 - | hypothetical protein TERM 27 37954 - 37941 - G 78 -4.5 -4.84527 | overlap 37934 CCGACATAGGAAAAA TCCCG CTAT CAGGA CGCGCCAGAATATCG RD1_A0043 40715 - 39480 - | RC169 RD1_A0044 41059 - 40781 - | hypothetical protein RD1_A0045 41819 - 41001 - | hypothetical protein RD1_A0046 41892 - 43037 + | exonuclease SbcD, putative RD1_A0047 43034 - 46093 + | exonuclease SbcC, putative RD1_A0048 46109 - 46399 + | hypothetical protein RD1_A0049 47658 - 46690 - | hypothetical protein RD1_A0050 48919 - 47573 - | hypothetical protein xerD 50192 - 49284 - | tyrosine recombinase TERM 28 50290 - 50270 - R 81 -12.7 -3.05384 | GCTCTCGCGAGGTAA CGATAATGG CCC CCATTATCG ATCCAGAGCTCGCTG RD1_A0052 50930 - 50313 - | hypothetical protein RD1_A0053 51026 - 51199 + | hypothetical protein TERM 29 52114 - 52129 + F 83 -6.2 -4.90013 | CCAATGATGTCTAAT GTAAAG CGCA CTTTAC TTTTTGGTTCAATTA TERM 30 53917 - 53933 + GF 76 -2.9 -5.00616 | opp_overlap 53918, overlap 53918 GCCCCAACTCAAATA TTGACGC TTC GCTTCAG TTTTTTGGCGGCGCA TERM 31 54761 - 54771 + GF 80 -4 -5.02074 | CTCCCGTCTGGTCGA TTTC ATG GAAA TTTTTTCCGGCGTCG TERM 32 56463 - 56474 + GF 74 -7.2 -4.1711 | opp_overlap 56459 GAAACACCATATGCA GCGC CCGC GCGC TTTATTGACGGTAAT TERM 33 59551 - 59539 - gf 73 -10.5 -3.32844 | GTTCTGATCTTATAA CCGGC GGT GCCGG AAATGATACGGGGTA frpC 52602 - 60155 + | iron-regulated protein frpC, putative TERM 34 60247 - 60234 - gf 78 -6.7 -4.56597 | GCTTTGGGTTAAAAA TGTGG GTAG CCACA CGATGGTCTATGGTT RD1_A0055 60127 - 60360 + | hypothetical protein TERM 35 60375 - 60409 + F 74 -10.8 -3.57263 | AGGAGCCAGCAATCC GATGATGTGCTCATTG CCT TAGTGGGCACATCACC TTTGAAAATGACCAT RD1_A0056 60546 - 60863 + | hypothetical protein RD1_A0057 60980 - 61171 + | RC227 RD1_A0058 61914 - 61210 - | transposase, putative TERM 36 61838 - 61811 - G 71 -6.4 -4.20516 | gap 1 CGCTCAGCCAACAAA TCTCGCACATCTC GAC AAGATA-GCGAGA AGCGGCAGTACCAGC TERM 37 62020 - 62000 - g 71 -8.9 -3.7104 | ACCGAGATGCAACAA CAGGACGGC ACT GCCAGCCTG ACGCACGCCGAATGG RD1_A0059 61916 - 62677 + | putative transposase, ATP-binding component TERM 38 62822 - 62845 + T 100 -13.8 -4.46155 | AGGTAGGCTAGTCGG GGCCTGTCGG TTGT CCGCCAGGCC TTTTCTCAGTCTATG RD1_A0060 63454 - 63041 - | thermonuclease, putative TERM 39 63565 - 63545 - R 95 -14 -3.17392 | opp_overlap 63544 63543 GAGGCCCGAAGCTAA GGGCTGCC TATGC GGCAGCCC GATTGTTGTGCTTTT RD1_A0061 64160 - 63552 - | ardC-like protein TERM 40 64289 - 64268 - R 83 -7.3 -4.57569 | gap 1, opp_overlap 64268 64266, overlap 64252 GTACGGCGTCAAAAA CGCGGTATCA ATG CGA-ACCGCG TCTTTGCAATATTTA RD1_A0062 66237 - 64309 - | hypothetical protein TERM 41 65370 - 65385 + g 77 -4 -5.0133 | gap 1 ACCCACGGTCTTTTC CGCTCAC ACC GT-AGCG TTTTTTGCCAGCGTC TERM 42 67151 - 67113 - g 72 -2.4 -4.7878 | gap 1, opp_overlap 67109, overlap 67109 67115 GATTGACAAAACAAA GGGGGAGCTTTGG-TTC TGTACG GAAGCCGAAGCTCTCGC TGCAGGGTGGGCTGC exoI 66481 - 67182 + | succinoglycan biosynthesis protein ExoI RD1_A0065 67601 - 67930 + | hypothetical protein tnp 68408 - 68989 + | transposon resolvase RD1_A0068 70151 - 69819 - | hypothetical protein RD1_A0067 69705 - 70049 + | hypothetical protein RD1_A0069 70485 - 70063 - | succinoglycan biosynthesis protein Ex RD1_A0070 71179 - 70616 - | hypothetical protein RD1_A0071 71829 - 72164 + | hypothetical protein RD1_A0072 72419 - 74314 + | plasmid stabilization protein, putative TERM 43 74327 - 74348 + F 95 -15.1 -3.65812 | TGAACAGAACCGTTT GGGGGCGCG GGTG CGCGTCCCC TTCTCTTACAGACGC TERM 44 74663 - 74619 - g 87 -17.2 -3.09785 | gap 2 CGACACTCGAAGATA CCCTGACAGCC-GGT-CAGCGC GCG GCGCTGCACCTGGCGGACAGGG CCTCTACCCGTGATT RD1_A0073 74414 - 74755 + | hypothetical protein TERM 45 74782 - 74805 + G 81 -16 -2.87132 | opp_overlap 74776, overlap 74784 GTCAGTGAACCGGTG GAGGGCGCGC ATCT GCGCGTCCTC TCTCTCGGAGCCGGG TERM 46 74784 - 74803 + G 72 -12.8 -2.98823 | opp_overlap 74776, overlap 74782 CAGTGAACCGGTGGA GGGCGCGC ATCT GCGCGTCC TCTCTCTCGGAGCCG TERM 47 75002 - 75039 + G 84 -11.9 -4.0641 | gap 1, overlap 75025 CCATCGACCTACGGG CCG-CGATCACCGCCCGC GCG GCGGGCGATGAGGGGCGG TTTGTCTCCATCCCC RD1_A0074 74755 - 75591 + | hypothetical protein RD1_A0075 75863 - 75564 - | hypothetical protein RD1_A0076 76257 - 75736 - | hypothetical protein RD1_A0077 75934 - 76443 + | hypothetical protein TERM 48 76488 - 76509 + FH 100 -13.7 -5.17353 | opp_overlap 76486 76485 GGTGAGGATCAACTT GGCCCCCTT TCGC GAGGGGGCC TTTTTTAATGAATAT TERM 49 76737 - 76721 - g 77 -3.6 -4.89852 | overlap 76722 GGAGACGCAGAAAAA GCCGCT GTTGG AGCGGA TCAACGAGGTGCGGG rpsC 76587 - 76832 + | 30S ribosomal protein S3, putative RD1_A0079 76832 - 77248 + | hypothetical protein RD1_A0080 77368 - 77481 + | hypothetical protein RD1_A0081 77725 - 77633 - | hypothetical protein RD1_A0082 78023 - 77799 - | hypothetical protein TERM 50 78171 - 78185 + G 70 -3.4 -4.60041 | ACGGCTTTCACCCTG CGGGCG AAC CTTCCG TTTTTCCGCCTGCAT RD1_A0083 78076 - 78573 + | RC183 TERM 51 78602 - 78583 - f 100 -16.4 -3.06796 | GGCTAGGCCAGCCAA GGGGCGGC ACAC GCCGCCCC CGCACCCGGCACCGG TERM 52 78656 - 78685 + F 83 -7.8 -4.59773 | opp_overlap 78649, overlap 78657 CGCCGAAAGGCCACC TCCGCCGCCT CATCCCACCC AGGCGGCGGC TTTTTACCCATCGGG TERM 53 78657 - 78684 + F 75 -11.3 -3.35542 | opp_overlap 78649, overlap 78656 GCCGAAAGGCCACCT CCGCCGCCT CATCCCACCC AGGCGGCGG CTTTTTACCCATCGG TERM 54 79037 - 79050 + F 86 -6.7 -5.0925 | CCCATAATAATTCCT CTACG GCAG CGTAG TTTTTCCTTTTGAGC TERM 55 79292 - 79312 + F 100 -16.9 -5.72622 | opp_overlap 79248 TATCCGTTTCCATGC GCCCCCGAA ATC TTCGGGGGC TTTTTTGTTTCTAGA RD1_A0084 79343 - 80545 + | drug resistance transporter Bcr RD1_A0085 82236 - 81274 - | pirin protein, putative RD1_A0086 82956 - 82315 - | phosphoglycerate mutase domain-containing protein RD1_A0087 85210 - 83021 - | isoquinoline 1-oxidoreductase iorA 85664 - 85212 - | isoquinoline 1-oxidoreductase TERM 56 85275 - 85261 - G 72 -11.4 -3.30007 | overlap 85250 AAGATGCGGTTATAA GTGCCG CAG CGGCAC AGGTTCGGCGCCATG TERM 57 85756 - 85742 - R 74 -7.8 -4.11216 | opp_overlap 85741 GCTGGACCCCTAAAA CGCCTC GTC AAGGCG ATATGTAGTGCCGGA RD1_A0089 87347 - 85749 - | major facilitator superfamily protein RD1_A0090 87630 - 87331 - | hypothetical protein dps 88193 - 87690 - | DNA protection during starvation protein, putative TERM 58 88289 - 88253 - R 95 -15.2 -3.53012 | opp_overlap 88268 88281, overlap 88259 GGTTTGGTGTTGAAA CGGAAAGGCGATAACG GCGTT CGCAACCGCCTTTCCG CGTTAGGCTATTCAG RD1_A0092 88755 - 88309 - | RC145 RD1_A0093 90025 - 88721 - | hypothetical protein TERM 59 89717 - 89698 - GR 74 -11.4 -3.2963 | ACCAGCCGCCCACAA CGCGGATC CACT GACCCGCG GGCGTCCGCTCGGCC TERM 60 90056 - 90085 + r 95 -14.2 -3.19175 | opp_overlap 90047 90052, overlap 90054 90064 GCAATAGGGAAGGGG GGCCGCGCCCCT GTGTCG GGGGGCGCGGCG TTGGGTCTATTCGGC RD1_A0094 90799 - 90092 - | putative hydrolase RD1_A0096 91069 - 90824 - | hypothetical protein RD1_A0097 91794 - 91168 - | RC150 TERM 61 91219 - 91204 - G 84 -5.4 -5.00616 | gap 1, opp_overlap 91204 91205, overlap 91205 91206 TGTGTGTTCAAAAAA CGGACGC AAC GCGTC-G ATCTCTTCTGCACGC RD1_A0098 92816 - 91806 - | putative dioxygenase RD1_A0099 92846 - 93760 + | LysR family transcriptional regulator RD1_A0100 94742 - 93840 - | AraC family transcription regulator RD1_A0101 96004 - 96573 + | AraC family transcriptional regulator RD1_A0104 96937 - 97056 + | hypothetical protein TERM 62 97096 - 97079 - f 70 -2.7 -4.8143 | opp_overlap 97095 TTAAGAACTGAAAAA GGAAC AACTTTGG GTTCC TGATCACTGAGTGTT TERM 63 98123 - 98152 + G 72 -12.3 -3.03619 | overlap 98126 CGTGCATCTGGGGTT TGAGCCGCATTTT GATC AAAGTGCGGCTTA TGTTGAGGGCTGGTT TERM 64 98126 - 98149 + G 77 -11.8 -3.66288 | overlap 98123 GCATCTGGGGTTTGA GCCGCATTTT GATC AAAGTGCGGC TTATGTTGAGGGCTG RD1_A0105 97386 - 98282 + | ArdC protein RD1_A0106 98282 - 98869 + | RC187 RD1_A0107 98961 - 99095 + | hypothetical protein RD1_A0108 99955 - 99308 - | hypothetical protein TERM 65 99921 - 99931 + g 76 -5.4 -4.62772 | GTATCGGCTCGAATT TCCT GAA AGGA TTTGTTTGGTTTACG virC1 100655 - 99942 - | hypothetical protein TERM 66 100224 - 100240 + g 75 -7.9 -4.1523 | GGTGATGAGGATGGC CACCGGA ATG TCCGGGG TTTCTGTCTGCTCCA TERM 67 100881 - 100853 - g 76 -5.9 -4.64846 | overlap 100854 GCACAAAGGACAAAA GGCTGTTCGCGCC AAA GGCACAAAGAGCG TCGGACCAGCAGGGC RD1_A0110 100818 - 100955 + | hypothetical protein TERM 68 101382 - 101396 + G 74 -7 -4.37886 | overlap 101383 CTTGCGGATTGCCGC GCGCCG GAT CGGCGG TTTTGTCGAGAATGA virD1 101221 - 101655 + | VirD1 TERM 69 102388 - 102370 - g 72 -11.6 -3.34344 | TCATCCTTGAAGCAA CGCCGCGC CTT GCGCGGGG CATTCAGGACCGGCC virD2 101856 - 104000 + | VirD2 protein TERM 70 104728 - 104751 + G 70 -3.1 -4.58395 | opp_overlap 104712, overlap 104729 CCAAAAGTGCCGAAG GCTTTCTGG AAGGGG CCAGAGAGA TTTTTGCGGCCTCCG TERM 71 105035 - 105054 + G 75 -2.8 -4.92812 | gap 1, overlap 105036 TACCTTCACCAATCT GCGACGTCA GCC TG-CGTCGA TTTATTTTGTTGTCG TERM 72 105150 - 105174 + G 80 -3.4 -5.10033 | opp_overlap 105149 ACGCAGCGGGAAATG CCGAAAGCGG ATGAG CCGTTCCCGG TTTTGTTTCTCTTGG TERM 73 106114 - 106101 - g 85 -9.5 -4.67353 | CGAGCGATTGAAAAA GCGCG CCTT CGCGC CGAGGTAAACTGGCC RD1_A0114 104010 - 106175 + | virD4 protein, putative SEQUENCE gi|115345636|ref|NC_008387.1| Roseobacter denitrificans plasmid pTB2, complete sequence (length 69269) RD1_B0001 780 - 1076 + | hypothetical protein RD1_B0002 1073 - 1288 + | hypothetical protein RD1_B0003 1298 - 3151 + | hypothetical protein TERM 1 3720 - 3706 - g 73 -4.2 -4.70659 | opp_overlap 3716 GTCTATAGCGAAAAA CCGC TGGCCAT GCGG CTGGATCAGGCGCGT RD1_B0004 3412 - 4581 + | oxidoreductase, putative RD1_B0005 4578 - 5579 + | hypothetical protein TERM 2 5859 - 5917 + G 100 -15.4 -4.93877 | gap 3, overlap 5861 GGCGCTGGTTCGGTG CCGCTG-CACTGGCCTG-GCGCATCGCCC CGCC GGG-GATCCGCGCAGGCCTGTGGCAGCTG TTTTATTTCCTGCAA TERM 3 5861 - 5915 + G 100 -16.6 -4.08958 | gap 3, overlap 5859 CGCTGGTTCGGTGCC GCTG-CACTGGCCTG-GCGCATCGCCC CGCC GGG-GATCCGCGCAGGCCTGTGGCAGC TGTTTTATTTCCTGC RD1_B0006 5579 - 6835 + | glycosyl transferase, putative RD1_B0007 7768 - 6830 - | glycosyl transferase, putative RD1_B0008 9468 - 7855 - | hypothetical protein TERM 4 9889 - 9906 + G 70 -4 -4.59027 | overlap 9890 CACAATCAGGGGATC AGCGCC AAACGC GGCGCC TTTTATCTGGTGCTT RD1_B0009 9616 - 10605 + | glycosyl transferase, putative RD1_B0010 10606 - 11451 + | sulfotransferase, putative RD1_B0011 11444 - 12412 + | glycosyl transferase, putative TERM 5 13491 - 13519 + G 74 -6.8 -4.29738 | gap 1, overlap 13489 GTCACTGAGTTTTCT GGTTATCC-GGTT TCGG ACCCTGGATAACC TTTTGGTCAATATGG RD1_B0012 12409 - 13782 + | polysaccharide biosynthesis protein, putative RD1_B0013 13951 - 15846 + | ABC transporter, putative RD1_B0014 15843 - 17156 + | HlyD family secretion protein RD1_B0015 17418 - 18104 + | PAP2 superfamily protein, putative noeK 19541 - 18171 - | phosphomannomutase rfbA 20431 - 19553 - | glucose-1-phosphate thymidylyltransferase TERM 6 19911 - 19930 + g 70 -3.5 -4.68593 | overlap 19912 19913 CCCGTGACCGCGTGG TTCGAGG GCGGCA CCTCGGG TTTTTCGATGATGCC TERM 7 20158 - 20144 - G 74 -7.1 -4.30719 | TTCCGCCAGAATAAA GGCCT GCGCG AGGCC ATCGGGGGAGGGTTG rfbD 21367 - 20444 - | dTDP-4-dehydrorhamnose reductase rfbB 22362 - 21286 - | dTDP-glucose 4,6-dehydratase rfbC 22955 - 22359 - | dTDP-4-dehydrorhamnose 3,5-epimerase RD1_B0021 23927 - 23106 - | exopolysaccharide biosynthesis TERM 8 23243 - 23205 - G 82 -11.7 -3.91196 | gap 1 TTCACAGATATCAAA CTGACCGTAGCGGGTCGC ATTG GCG-CGCGCGACGATCAG CGCACAATCCACATT TERM 9 23806 - 23818 + g 74 -3.4 -4.85177 | opp_overlap 23804, overlap 23804 23812 GCCTCCCACAAAGCG TCCT GCGGA AGGA TTTTTCCTGTGGTTT TERM 10 23887 - 23897 + g 70 -4.6 -4.56597 | overlap 23869 GTGGGCGTGCCCCTT GCCT TAC GGGC TTTTTCCAAAGCGGC RD1_B0022 25495 - 23948 - | putative polysaccharide chain length determinant protein exeA 26373 - 25492 - | general secretion pathway protein A RD1_B0024 26834 - 27535 + | sugar transferase TERM 11 28533 - 28523 - g 73 -4.6 -4.65916 | overlap 28526 GTCACGCGAAGAAAA CGAC AAG GCCG AAGCCTTCCTGCGCC RD1_B0025 27786 - 30185 + | TPR repeat-containing protein RD1_B0026 30373 - 30978 + | polysaccharide biosynthesis protein TERM 12 31024 - 31049 + GF 77 -8.1 -4.21936 | opp_overlap 31023 31017 31016 31024 31025, overlap 31025 TTTCAAACGCAAAAC CCGCGCACGTC ACAA GGCGAGCGCGC TTTTGGCATTATGCG TERM 13 31025 - 31048 + GF 72 -11.6 -3.1268 | opp_overlap 31024 31023 31017 31016 31025, overlap 31024 TTCAAACGCAAAACC CGCGCACGTC ACAA GGCGAGCGCG CTTTTGGCATTATGC TERM 14 32014 - 31996 - gf 70 -9.6 -3.35996 | CACCCGCAGCGAGAA CAGCAGTT TCG AACCGCTG GTGGATATCGACTAT RD1_B0027 30941 - 32383 + | hypothetical protein RD1_B0028 32417 - 33115 + | rhomboid family protein, putative RD1_B0029 35100 - 33190 - | hypothetical protein TERM 15 35140 - 35096 - G 93 -5.7 -5.57396 | gap 1, opp_overlap 35097, overlap 35097 ACAAGGAACAAAAAA CGCATCACG-CCCGCACCTT AGGAAA AAGATGCGGGGCGCGCTACT GATTTGAAAACTGCA TERM 16 35139 - 35097 - G 73 -9.2 -3.91997 | gap 1, opp_overlap 35097, overlap 35096 CAAGGAACAAAAAAC GCATCACG-CCCGCACCTT AGGAAA AAGATGCGGGGCGCGCTAC TGATTTGAAAACTGC sat 36895 - 35183 - | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein RD1_B0031 37360 - 38409 + | von Willebrand factor type A domain-containing protein TERM 17 38431 - 38462 + F 100 -15.2 -5.01823 | opp_overlap 38430 GCCTGATCGAGATAT CCCGAAGCGGCC CTGAAATC GGTCGCTTCGGG TTTTGTTATTGTTGT RD1_B0032 38523 - 39299 + | TPR domain-containing protein TERM 18 39425 - 39439 + GT 87 -8.5 -4.56597 | CATTCGATCTGGCAC GGGCG CGCAT CGCCC TTTTTAACGGCGACC RD1_B0033 38935 - 40548 + | TPR domain-containing protein TERM 19 40648 - 40667 + T 74 -10.7 -3.60971 | opp_overlap 40648 GGCCTTACGCAAAAA GGGCACC CGTCAA GGTGCCC TTTCAGAATTCAGCT TERM 20 40667 - 40648 - T 95 -11.4 -4.65895 | opp_overlap 40648 GGCCTTACGCAAAAA GGGCACCC GTCA AGGTGCCC TTTCAGAATTCAGCT RD1_B0034 41337 - 40696 - | hypothetical protein TERM 21 41760 - 41743 - R 100 -10.5 -4.73108 | opp_overlap 41743 TGCAGAAAACGAAAA GGGCACC CAAA GGCGCCC TTTCAAAACCACGTA RD1_B0035 42463 - 41786 - | hypothetical protein xanB 44181 - 42760 - | mannose-1-phosphate guanylyltransferase TERM 22 43186 - 43216 + g 80 -10.5 -4.07885 | gap 2 TTTATCCGCCACCAG CACCG-CGTCG-GGC ATG GCCACGACGATGGTG TTTTCCAGCCCGATG TERM 23 43630 - 43650 + g 76 -6.7 -4.56597 | ATCTTTCAGCATCGC CTCGGCCCG GGT CTGGTCGGG TTTTTCGACAAAGCG RD1_B0037 44427 - 46031 + | hypothetical protein TERM 24 46288 - 46232 - f 71 -4.7 -4.62336 | gap 2, opp_overlap 46234 46246 46278, overlap 46233 46234 ACGCCATGCGAAAAA CCTCGATCACGTAACGCTGTCTGAAAT TCAGG ATTTCA-AC-GCGTTACGTGACACATG ATGTTTTGGGTATTT RD1_B0038 46730 - 47722 + | acyltransferase, putative RD1_B0039 48629 - 47874 - | hypothetical protein galE 49662 - 48634 - | UDP-glucose 4-epimerase TERM 25 49862 - 49879 + GH 87 -8.5 -4.59774 | overlap 49860 GGTGGAATTTTCACG GCCAATA GCTG TATTGGC TTTATATTTTCTTTC RD1_B0041 49793 - 50500 + | hypothetical protein RD1_B0042 50466 - 50867 + | hypothetical protein RD1_B0043 50950 - 51939 + | UDP-glucuronate 5'-epimerase RD1_B0044 52312 - 52178 - | hypothetical protein TERM 26 52873 - 52858 - g 76 -5.4 -4.63527 | CTATTACCTCAAAAA GTCCCT GTTC AAGGAC AAAAGCCTGTATTTC TERM 27 53137 - 53117 - g 72 -13.3 -2.60079 | overlap 53113 GGAGGGCAGAACGCA CATGGCAGC TAT GCCGCCATG AGACGCCACGCGAGC RD1_B0046 52412 - 53578 + | hypothetical protein RD1_B0047 54585 - 53605 - | chromosome partitioning protein, putative TERM 28 53813 - 53823 + g 73 -4.6 -4.68384 | TCCTGCGGATTGGCT GCGC GCA GTGC TTTTGTTAGGTGGAT TERM 29 54217 - 54195 - G 80 -9.9 -4.07568 | gap 1 CGGTTTCCTGCAAAA GCGCCTGCAC TGCC GTG-AGGCGC CGCCAGCCCGAGATC rep 56103 - 54712 - | putative replication protein TERM 30 55476 - 55489 + g 71 -8.1 -4.07568 | GGGCCTCACCGCGAT CCAGC CGGC GCTGG TTTTCGGCCCGCAGA TERM 31 56501 - 56483 - H 71 -7.4 -4.05788 | TCCGTGTAAATGAAA CCCCGA AAGGCAA TCGGGG CAAATATGGGTCTGC TERM 32 56686 - 56705 + G 71 -7.2 -4.2349 | gap 1 CCAAACATGATCTGG CAGCG-ATG GAG CATCCGCTG TTTTCGCTCTCGACG TERM 33 57508 - 57453 - g 93 -16.1 -3.61715 | opp_overlap 57461 57486 GAGGCGCTGGAAGAA GCCCGCC-GTCTGGCCCCCGGCGCGGA TATC TACGCGCTGGAGGCC-GACTGGCGCAC CATGTGGGCCACCAG repA 56583 - 57590 + | hypothetical protein TERM 34 58494 - 58504 + G 76 -5.4 -4.63527 | GATCGGGAATGCGAT CAAC ACG GTTG TTTTTGGCATCCTGC RD1_B0050 57733 - 58776 + | glycosyl transferase group 2 family protein RD1_B0051 60127 - 58832 - | hypothetical protein TERM 35 59299 - 59321 + g 100 -9 -5.02074 | AAACATCTAGGCTGC GGCCCTCCCG CCT CGGCATGGCC TTTTTTGACAGATCA TERM 36 60544 - 60560 + H 70 -8.7 -3.75169 | ATACCCACACCAGCG CGCAATC TAA GGTTGCG TTTCGTGGCGTAGTG RD1_B0052 60752 - 62851 + | hypothetical protein RD1_B0053 62817 - 64121 + | rhizobiocin TERM 37 64134 - 64179 + F 100 -8.9 -5.03314 | opp_overlap 64142, overlap 64142 TAATCAGTGGGCTTT TGAAGAAACGACTGCGGGCTG GAAA CTCCCCGCAGTCGTTTTGGCG TTTTTTAAACCTAGA TERM 38 64171 - 64142 - f 100 -13.5 -4.15044 | opp_overlap 64134 64142 GGGCTTTTGAAGAAA CGACTGCGGGCTG GAAA CTCCCCGCAGTCG TTTTGGCGTTTTTTA TERM 39 64142 - 64171 + F 100 -13.5 -4.33739 | opp_overlap 64142, overlap 64134 GGGCTTTTGAAGAAA CGACTGCGGGCTG GAAA CTCCCCGCAGTCG TTTTGGCGTTTTTTA RD1_B0054 64484 - 64819 + | hypothetical protein TERM 40 65783 - 65799 + G 75 -2.2 -4.96762 | overlap 65785 TCGAATATCCTGTTC TGGTCG GAAAG CGGCTA TTTTTCTGGTGTCTC TERM 41 66313 - 66326 + G 81 -5.9 -4.81249 | CTACAGCATCTATCT GTGGC ACCA GCCGC TTTTTGCCTTTACCC RD1_B0055 65438 - 67375 + | acyltransferase family protein TERM 42 67411 - 67436 + F 70 -8.9 -3.70863 | overlap 67408 67407 GCATGCTTTGGAGCC GTTAGCGGCGT TGTT GCGCCGCAAGC TTTCCATGATATGTA TERM 43 68164 - 68154 - g 70 -3.2 -4.63048 | CTGACAAACAAGAAA TGCC CGA AGCA GAGGATAAAACTTCA RD1_B0056 67499 - 68419 + | hypothetical protein ugd 69211 - 68519 - | UDP-glucose 6-dehydrogenase SEQUENCE gi|115345694|ref|NC_008388.1| Roseobacter denitrificans plasmid pTB3, complete sequence (length 16575) RD1_C0001 1168 - 617 - | hypothetical protein virD 2598 - 1189 - | virD4 protein, putative RD1_C0004 3137 - 2841 - | mobilization protein RD1_C0003 2434 - 3084 + | hypothetical protein RD1_C0005 3702 - 3415 - | myosin I heavy chain kinase TERM 1 3815 - 3797 - g 76 -10.2 -3.84648 | overlap 3798 GTGAAGACGATCAAA CGCAGCGC CGG GCGCTCCG CCACGGCGGCGGCCG mobL 3761 - 5044 + | mobilization protein RD1_C0007 5385 - 5038 - | hypothetical protein RD1_C0008 5623 - 7875 + | hypothetical protein RD1_C0009 7844 - 8755 + | hypothetical protein TERM 2 9745 - 9713 - f 72 -2.6 -4.9218 | opp_overlap 9715, overlap 9714 9715 TAGCTATGACAAAAA CTCCCGGCAAAACC TTTGC GGTTTTGGCAGGTT TTTGTCACACTGAGA TERM 3 9715 - 9743 + F 91 -7.4 -4.84359 | opp_overlap 9715 9714 9713 GCTATGACAAAAACT CCCGGCAAAACC TTTGC GGTTTTGGCAGG TTTTTGTCACACTGA RD1_C0010 9762 - 10301 + | site-specific recombinase RD1_C0011 10386 - 11681 + | hypothetical protein TERM 4 12250 - 12260 + G 78 -6.8 -4.71061 | opp_overlap 12250 CATAACGTTGAACAA GGTC TCG GACC TTTTTCAGTCTGGCT RD1_C0012 11666 - 12763 + | hypothetical protein RD1_C0013 13630 - 12770 - | hypothetical protein TERM 5 12871 - 12893 + g 71 -7 -4.25104 | CATTCATGGCAGCTT CGAAATGGAC TTT GTTCAGTTCG TTTTCATCGCCCCCG RD1_C0014 14811 - 13627 - | DNA-cytosine methyltransferase, putative TERM 6 14799 - 14818 + g 70 -3.5 -4.71401 | overlap 14805 TTGGATTCCCTGTAT TGCTGAC GGGCAA GTCCGCA TTTTCTCATTTTGTT RD1_C0015 15168 - 14890 - | partition protein ParB parA 15820 - 15152 - | partition protein ParA SEQUENCE gi|115345712|ref|NC_008389.1| Roseobacter denitrificans plasmid pTB4, complete sequence (length 5824) RD1_D0001 936 - 838 - | hypothetical protein RD1_D0002 983 - 1570 + | oxidoreductase, putative RD1_D0003 1855 - 2859 + | hypothetical protein RD1_D0004 2663 - 3529 + | hypothetical protein TERM 1 3864 - 3883 + T 74 -7.9 -4.2123 | overlap 3860 ATGGCTCTTGTGATC GTCGGAA CGCTCT TTCCGAC TTTCTTCGCTGCCTG RD1_D0005 4621 - 4109 - | hypothetical protein TERM 2 4663 - 4622 - H 74 -11.5 -3.30243 | gap 1, opp_overlap 4659 ACCGACCGCTGACAA GCCTGCACCC-GACCGCC CCCATAT GGCGGGGAGGGCGCAGGC TTAGCCCCCGCGCTT TERM 3 4788 - 4806 + G 73 -8.8 -3.90112 | overlap 4775 ATTCCGGCCAGGTGC CGGATCTC TGC GTGATCCG TTTCGTTGAACGGAA RD1_D0006 4784 - 5047 + | hypothetical protein