TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.508626 %AT, 4388142 nt, 35373 terms. Intergenic: 0.582151 %AT, H2T: 506916 nt, 4795 terms; T2T: 163009 nt, 3891 terms; H2H: 217817 nt, 3468 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|117676079|ref|NC_008573.1| Shewanella sp. ANA-3 plasmid 1, complete sequence (length 278942) Shewana3_4141 1030 - 1248 + | putative transposase Shewana3_4142 2471 - 1491 - | IS4 family transposase Shewana3_4143 2836 - 2555 - | hypothetical protein Shewana3_4144 3239 - 2880 - | plastocyanin domain-containing protein TERM 1 3079 - 3092 + g 72 -8.1 -3.90112 | overlap 3088 TTAAGTTCTACCGGT GTGCC GGCG GGCAC TTTGATTCGCGAAGG Shewana3_4145 5612 - 3276 - | copper-translocating P-type ATPase TERM 2 4632 - 4643 + g 74 -3.6 -4.91511 | overlap 4631 ACCTGCCGCCACCAT GTCG CCGA CGGC TTTTTCTACTGGCAT Shewana3_4146 6504 - 5788 - | GntR family transcriptional regulator TERM 3 6260 - 6276 + g 70 -2.9 -4.79174 | overlap 6261 TTAATATCAACTAAG CGACTGG CCT CTAGTCC TTTTATTGCTTCCCT TERM 4 6552 - 6508 - R 70 -3.8 -4.89729 | gap 1, opp_overlap 6516 6521 6525, overlap 6516 6549 GATAAAATTCAAAAA TTATGAAATTCAACCAACTCA AAAA TGAGTTGGTTGAATAAT-TAA AGATTAAAACTTATA TERM 5 6516 - 6545 + r 100 -16.7 -2.73542 | opp_overlap 6508 6516, overlap 6521 6525 TCAAAAATTATGAAA TTCAACCAACTCA AAAA TGAGTTGGTTGAA TAATTAAAGATTAAA TERM 6 6545 - 6516 - R 100 -16.7 -3.96337 | opp_overlap 6516 6521 6525, overlap 6508 TCAAAAATTATGAAA TTCAACCAACTCA AAAA TGAGTTGGTTGAA TAATTAAAGATTAAA TERM 7 6521 - 6540 + r 79 -10.8 -3.13164 | opp_overlap 6516 6508, overlap 6516 6525 AATTATGAAATTCAA CCAACTCA AAAA TGAGTTGG TTGAATAATTAAAGA Shewana3_4147 7779 - 6556 - | outer membrane porin TERM 8 7467 - 7487 + g 73 -5.3 -4.71061 | opp_overlap 7458, overlap 7458 ACAAAATGGCGCCAT CAGCGTCCA TAT TGCCCGCTG TTTTTCCATCTCGGT Shewana3_4148 8582 - 8181 - | hypothetical protein TERM 9 10250 - 10230 - H 78 -8.9 -3.8709 | AAATCCCGCGAGAAA CCCCGTCCT TCT AGGGCGAGG AGGGATAGCGGTTGC Shewana3_4149 10342 - 11445 + | IS605 family transposase OrfB TERM 10 11519 - 11498 - T 88 -10.1 -4.08557 | GCCTTGAAACAAGAA TCCCCTTCC TTTA GGGAGGGGA GCAGTCAAAGAGTTA Shewana3_4150 11842 - 11576 - | hypothetical protein TERM 11 11901 - 11952 + r 75 -8.2 -3.74747 | overlap 11932 GCGGGGGCATTTGAA CGAAAACCTACGGTTTTGAA TCCTGTGGCACC CTCGTAACCGTAGGTTTTCG TTTGATAGCCGTTAA Shewana3_4151 12505 - 12218 - | hypothetical protein Shewana3_4152 12888 - 12547 - | lipoprotein signal peptidase-like protein Shewana3_4153 13294 - 12893 - | nitrogen regulatory protein P-II Shewana3_4154 16431 - 13291 - | CzcA family heavy metal efflux protein Shewana3_4155 17447 - 16506 - | RND family efflux transporter MFP subunit Shewana3_4156 18784 - 17444 - | outer membrane efflux protein TERM 12 17981 - 18005 + g 80 -2.2 -5.49809 | gap 1, overlap 17983 TTTGAGGCGGGACTC TGCTGCGAATA CTTC TA-TCGCAGGA TTTTTTTCAACTTTG TERM 13 18766 - 18750 - G 79 -11.5 -3.53012 | TTCCTCCGCCCCAAA GCGCCAG AAC CCGGCGC AGTACGTATTGATAG TERM 14 19268 - 19258 - R 74 -6.8 -4.29929 | ATGAAATGGAATAAA CTGC GAA GCAG TCCACCCTTGATTAC Shewana3_4157 20315 - 19416 - | Co/Zn/Cd efflux system component TERM 15 20371 - 20353 - H 82 -10.4 -3.59979 | GGTGGGCAGTTTAAA CTCTATAG TTA CTATAGAG TCAAGCACAGAGATT TERM 16 20447 - 20419 - g 76 -4.5 -5.02074 | opp_overlap 20421, overlap 20421 CGAGCTGGCAAAAAA GACGGATTGCTCG GTG CAAACTATCCGTT ACTATGAAAAAGAAC TERM 17 20445 - 20421 - g 71 -7.1 -4.13963 | opp_overlap 20421, overlap 20419 AGCTGGCAAAAAAGA CGGATTGCTCG GTG CAAACTATCCG TTACTATGAAAAAGA TERM 18 20473 - 20459 - g 74 -4.2 -4.77036 | opp_overlap 20465, overlap 20465 CGTTACTATGAAAAA GAACAG TTG CTGTGC ACGACACAGCGTAGT TERM 19 20516 - 20534 + G 70 -8.8 -3.53174 | opp_overlap 20516, overlap 20514 CGACTTTACGATGAA GCTGCTGT CGA ACAGCTGC TATTTATCAAGCTCT Shewana3_4158 20393 - 20800 + | MerR family transcriptional regulator Shewana3_4159 21137 - 21307 + | putative transposase TERM 20 21630 - 21616 - f 70 -2.8 -4.93547 | TCAATTAAGGAAAAA TAAGCG GTT CGATTA AGGGACAAGCTCGTC Shewana3_4160 21935 - 22345 + | S-adenosylhomocysteine hydrolase Shewana3_4161 22342 - 23283 + | hypothetical protein TERM 21 24260 - 24294 + G 79 -7.3 -4.52505 | gap 1 AGCGATCCACGTTAC TCGCGTTTTGGTCTTG CGCC CAAAACCAAAGC-CGA TTTTGCCTTTTTATT TERM 22 25449 - 25434 - g 82 -7.6 -4.67651 | overlap 25439 25441 ACACCGTAAAAGAAA GCAAAG ACGG CTTTGC CAATGCCGAAGTGGC TERM 23 25590 - 25577 - g 76 -3.1 -5.14163 | ATCGATGAAGAAAAA GCTCT GAAA AAAGC GGTCAAAGAAGCACA Shewana3_4162 23291 - 25915 + | type I restriction-modification system, M subunit TERM 24 26524 - 26512 - g 73 -2.7 -5.02074 | CCATGCTGGAAAAAA TGTTC CCC AAACA AGGCGAAACCATCCC TERM 25 26743 - 26725 - g 86 -3.1 -5.64274 | opp_overlap 26729 GGAGTCAGAAAAAAA TTACGGC TCTAG GCCTTAA TAGTTCATCAGCAAA Shewana3_4163 25917 - 27134 + | restriction modification system DNA specificity subunit TERM 26 30456 - 30470 + G 73 -2.8 -4.91852 | overlap 30458 AATATCCGAATCGAT CAGTTT CTA AAACAG TTTATTTTTGCTCAG Shewana3_4164 27306 - 30536 + | HsdR family type I site-specific deoxyribonuclease Shewana3_4165 31375 - 30965 - | hypothetical protein Shewana3_4166 32007 - 31405 - | hypothetical protein Shewana3_4167 32974 - 32102 - | DNA replication terminus site-binding protein Shewana3_4168 34007 - 33318 - | hypothetical protein TERM 27 34641 - 34619 - g 79 -7 -4.64844 | CGGATACATAGAAAA TCGCAGTTAG TGG CTAACAACGA ACTACATCGAGCACA Shewana3_4169 34151 - 35299 + | hypothetical protein Shewana3_4170 35699 - 36355 + | hypothetical protein Shewana3_4171 36438 - 37784 + | hypothetical protein TERM 28 38379 - 38395 + T 76 -8.1 -4.20783 | GCTAACAGTGAATGG TTGGAAT TTC ATTCCAA TTTGTTAGATAAGAT Shewana3_4172 39615 - 38365 - | DNA-directed DNA polymerase Shewana3_4173 40346 - 39612 - | putative prophage repressor TERM 29 40488 - 40526 + r 76 -8.1 -4.11371 | overlap 40490 GAAACTACTGCTTGG AAGTTGGGCCTACTACC ATCGG GGTTGTAGGCCTCACTG TTTTGAAGAGTATTA TERM 30 40490 - 40524 + r 84 -10.7 -3.64984 | overlap 40488 AACTACTGCTTGGAA GTTGGGCCTACTACC ATCGG GGTTGTAGGCCTCAC TGTTTTGAAGAGTAT Shewana3_4174 40911 - 40552 - | hypothetical protein TERM 31 41073 - 41038 - H 73 -8.4 -3.6284 | opp_overlap 41045, overlap 41039 41045 AATCACCACGGGAAA CGGGAAACGATGTTTC CGTA AAAACATCGTTTCCAT TGCAGAGTGTTGAAT TERM 32 41072 - 41039 - H 83 -11.9 -2.77222 | opp_overlap 41045, overlap 41038 41045 ATCACCACGGGAAAC GGGAAACGATGTTTC CGTA AAAACATCGTTTCCA TTGCAGAGTGTTGAA TERM 33 41066 - 41045 - H 70 -8.1 -3.71917 | opp_overlap 41045, overlap 41039 41038 ACGGGAAACGGGAAA CGATGTTTC CGTA AAAACATCG TTTCCATTGCAGAGT TERM 34 41045 - 41066 + H 70 -7.4 -3.75332 | opp_overlap 41045 41039 41038 ACGGGAAACGGGAAA CGATGTTT CCGTAA AAACATCG TTTCCATTGCAGAGT Shewana3_4175 41152 - 42258 + | hypothetical protein Shewana3_4176 43521 - 42673 - | hypothetical protein Shewana3_4177 44170 - 43496 - | CBS domain-containing protein Shewana3_4178 45335 - 44721 - | hypothetical protein TERM 35 44838 - 44873 + g 85 -3.8 -5.47159 | gap 1, overlap 44838 ATACTGACACTGATT GGTG-GGCGGTAACCAC TCT GTGATCCCCGCCGCCCC TTTTTCTTTATTCAA Shewana3_4179 46507 - 45611 - | hypothetical protein Shewana3_4180 47165 - 46518 - | hypothetical protein Shewana3_4181 47901 - 47179 - | hypothetical protein TERM 36 47656 - 47679 + g 70 -9.6 -3.27298 | opp_overlap 47656 CAGACCGCCGATATA GGTCAGTTTG GTTT CAATCTGACC TTCGTCATTCAGCGC Shewana3_4182 48957 - 48256 - | hypothetical protein TERM 37 48829 - 48855 + g 78 -3.7 -5.08015 | gap 1, overlap 48825 48830 CGGATCAAGACCTCT CCGTTTGCGAGA GTTA TC-CGCAAGCGA TTTGTTTTTTAGCTT Shewana3_4183 49029 - 49559 + | lytic transglycosylase, catalytic TERM 38 49568 - 49589 + T 88 -10.1 -4.08557 | GCGCTAATTGACTGC TCCCCTCCC TAAA GGAAGGGGA TTCTTGTTTCAAGGC Shewana3_4184 50745 - 49642 - | IS605 family transposase OrfB TERM 39 50837 - 50857 + r 78 -8.9 -3.8709 | GCAACCGCTATCCCT CCTCGCCCT AGA AGGACGGGG TTTCTCGCGGGATTT Shewana3_4185 51413 - 50898 - | hypothetical protein Shewana3_4186 51769 - 51416 - | membrane-bound metal-dependent hydrolase Shewana3_4187 52488 - 51874 - | hypothetical protein Shewana3_4188 52776 - 53429 + | hypothetical protein TERM 40 53455 - 53486 + T 81 -10.8 -3.40382 | opp_overlap 53455 AATCCCAAAAAAAAA CGACGAAGGGATGC CGTA GCATTCCAACGTCG TTCTACACTTTAGTG TERM 41 53486 - 53455 - T 100 -8.6 -6.10489 | opp_overlap 53455 AATCCCAAAAAAAAA CGACGAAGGGATGC CGTA GCATTCCAACGTCG TTCTACACTTTAGTG Shewana3_4189 54005 - 53496 - | hypothetical protein TERM 42 54059 - 54026 - R 79 -7.6 -4.34557 | opp_overlap 54037 54039, overlap 54027 54029 54039 AATTTAAAAATTAAA TGAGGGCGAG-CAACC CTAA GGTTGTCTCACCCT-A GGGTATTTGCAACGG TERM 43 54059 - 54027 - R 72 -9.2 -3.19107 | gap 1, opp_overlap 54037 54039, overlap 54026 54029 54039 ATTTAAAAATTAAAT GAGGGCGAG-CAACC CTAA GGTTGTCTCACCCTA GGGTATTTGCAACGG TERM 44 54057 - 54029 - R 86 -11.8 -3.14257 | gap 1, opp_overlap 54037 54039, overlap 54026 54027 54039 TTAAAAATTAAATGA GGGCGAG-CAACC CTAA GGTTGTCTCACCC TAGGGTATTTGCAAC Shewana3_4190 54537 - 54097 - | hypothetical protein TERM 45 54592 - 54560 - R 100 -10.6 -5.31275 | gap 1 TCCTATTACAAAAAA GGGTGAGCTACC-CC AATG GGTGATTGCTCACCC AAGGGGTAATGAAAA Shewana3_4191 54833 - 54609 - | ferredoxin TERM 46 54879 - 54851 - R 74 -8.1 -4.07568 | opp_overlap 54857 54862 54865 CTTGCTCCTTTAAAA GTAAGCCACACCC GTC GGGTAGGTCTTAC CCGATAGTTAATAAT TERM 47 54865 - 54883 + r 70 -9.6 -2.80492 | opp_overlap 54851, overlap 54857 54862 AGTAAGCCACACCCG TCGGGTAG GTC TTACCCGA TAGTTAATAATCGTG TERM 48 55301 - 55321 + r 77 -4.7 -5.011 | ACGACTCATTCAGCT CGTTAATGT TTA ACAATGACG TTTTCTTGTTTGCAT Shewana3_4192 55773 - 55345 - | hypothetical protein TERM 49 55807 - 55795 - R 75 -5.5 -4.81249 | CTCCAAATTCAAAAA TGCCC GTA AGGCA TAAACTAAAAAAGGG TERM 50 55855 - 55820 - R 100 -8.3 -5.42514 | gap 1, overlap 55850 GCATAAACTAAAAAA GGGGGAGTTATGGCCC GGAGG GGGCTA-AACTCACCC CCAAGGGTTAAAAAA Shewana3_4193 56452 - 55904 - | hypothetical protein TERM 51 56522 - 56489 - R 100 -11.7 -5.28176 | gap 1, opp_overlap 56497 56502 GGCAGGTATAAAAAA GGGGTGAGCATGGCCC TTG GGGGCATGG-CACCCC CCCCCAAGGGTTAAA TERM 52 56502 - 56532 + r 83 -11.2 -3.41195 | opp_overlap 56489, overlap 56497 AAGGGGTGAGCATGG CCCTTGGGGG CATGGCACCCC CCCCCAAGGG TTAAATTTTGATGTT TERM 53 56550 - 56563 + r 70 -8.1 -3.61328 | AAATTTTGATGTTAA GCTGC AATG GCAGC TTTAACGGTATTGGT Shewana3_4194 57919 - 56546 - | C-5 cytosine-specific DNA methylase TERM 54 57996 - 57962 - R 100 -15 -5.86976 | opp_overlap 57972 57975 57991, overlap 57990 GCATAAAACAAAAAA GGGTGAGCTATGGCCC TAG GGGACATTACTCACCC CAAGGGTTAAATTTT Shewana3_4195 58335 - 58048 - | hypothetical protein Shewana3_4196 58891 - 58457 - | hypothetical protein TERM 55 58972 - 58939 - R 100 -14.7 -5.13722 | gap 1, opp_overlap 58951, overlap 58970 GGCATTAAAATAAAA GGGTGAGTC-TGCCCC ATG GGGACAAAACTCACCC CCAAGGGTTTAAAAA Shewana3_4197 59368 - 59003 - | putative toxin of addiction system TERM 56 59824 - 59853 + r 74 -9.3 -3.38297 | gap 1, opp_overlap 59818 59823 TTAATTAAAGGGAAT CCG-CCCTAGGGCA AAA TTCCCTAGGGATGG TTAATCTATGTTGAT Shewana3_4198 60306 - 59875 - | hypothetical protein TERM 57 60374 - 60344 - R 70 -3.9 -4.88217 | gap 1, opp_overlap 60354 60355, overlap 60345 AGTAAAAAAGTAAAA TGGTGCGCA-GGCC TTGA GGCTATGCACACCT CAAGGGTTTTGGCTT TERM 58 60609 - 60626 + r 73 -8.3 -3.67417 | GGCCACTCGGTAACG GCCCCGC GTTG GCAGGGC TTTGGAATTAACTAT TERM 59 61073 - 61050 - R 83 -9 -4.15453 | opp_overlap 61008 61050 TAATCCACTTTAAAA TGAACACCTT TTGT AAGGTATTCA TTTACGACTCAAGCC Shewana3_4199 62101 - 61082 - | hypothetical protein TERM 60 61563 - 61575 + g 83 -9.1 -4.35581 | opp_overlap 61561 TAAACGCCTAACATC GCTGG AGT CCAGC TTTTCACTATTTTCC TERM 61 62272 - 62240 - R 80 -10.6 -3.55761 | gap 1, opp_overlap 62231 62230 62248 62251, overlap 62241 TATTCATGCGCTAAA TGGCGCACTTCTCCC TAGA GGG-GAAGTACGCCC CTCTAGGGATTAATT TERM 62 62271 - 62241 - R 95 -14.1 -2.73243 | gap 1, opp_overlap 62231 62230 62248 62251, overlap 62240 ATTCATGCGCTAAAT GGCGCACTTCTCCC TAGA GGG-GAAGTACGCC CCTCTAGGGATTAAT TERM 63 62248 - 62285 + r 78 -9.3 -3.70848 | gap 1, opp_overlap 62241 62240, overlap 62251 CGCTAAATGGCGCAC TT-CTCCCTAGAGGGG AAGTACG CCCCTCTAGGGATTAA TTGTGTTAAATGTGT TERM 64 62251 - 62281 + r 100 -17 -3.54784 | opp_overlap 62241 62240, overlap 62248 TAAATGGCGCACTTC TCCCTAGAGGGG AAGTACG CCCCTCTAGGGA TTAATTGTGTTAAAT Shewana3_4200 63763 - 62291 - | hypothetical protein TERM 65 63453 - 63466 + g 70 -8.1 -3.73953 | opp_overlap 63453 63452 63447 GTTACCCAATCAAAT CCAGC TAAT GCTGG TTTGATCGCAGTAAT TERM 66 63976 - 63941 - R 100 -13.2 -6.15259 | opp_overlap 63954, overlap 63942 63953 63954 TAAGGTAAAAAAAAA TGGGGTGAGAAAGCCC TTGG GGGCGTACTCACCCCC AAGGGTTAAATTAAG TERM 67 63975 - 63942 - R 100 -16.7 -4.26715 | opp_overlap 63954, overlap 63941 63953 63954 AAGGTAAAAAAAAAT GGGGTGAGAAAGCCC TTGG GGGCGTACTCACCCC CAAGGGTTAAATTAA TERM 68 63982 - 63953 - R 100 -15.7 -3.8709 | opp_overlap 63954, overlap 63942 63941 63954 AAATGGGGTGAGAAA GCCCTTGGGGGCG TACT CACCCCCAAGGGT TAAATTAAGCATTCG TERM 69 63981 - 63954 - R 100 -19.2 -2.91772 | opp_overlap 63954, overlap 63942 63941 63953 AATGGGGTGAGAAAG CCCTTGGGGGCG TACT CACCCCCAAGGG TTAAATTAAGCATTC TERM 70 63954 - 63981 + r 100 -17 -3.18199 | opp_overlap 63942 63941 63954 63953 AATGGGGTGAGAAAG CCCTTGGGGGCG TACT CACCCCCAAGGG TTAAATTAAGCATTC Shewana3_4201 64961 - 63987 - | ATPase TERM 71 65042 - 65009 - R 100 -14.7 -5.13722 | gap 1, opp_overlap 65021, overlap 65040 GGCATTAAAATAAAA GGGTGAGTC-TGCCCC ATG GGGACAAAACTCACCC CCAAGGGTTTAAAAA TERM 72 65085 - 65070 - R 75 -2.4 -5.33921 | overlap 65071 AAATTAATTAAAAAA CGCAGC AAAA GCGGCA TCTAACTCGGCACTT Shewana3_4202 66125 - 65058 - | hypothetical protein TERM 73 65983 - 66002 + g 74 -8 -4.10781 | ACGTCCCCACCTTGA TCATCAAA TACC TTTGATGA TTTCTCTGACTTCTT TERM 74 66195 - 66162 - R 100 -14.7 -5.64274 | gap 1, opp_overlap 66173 66173, overlap 66189 66190 TTAGGCATAAAAAAA GGGTGAGTC-TGCCCC GGG GGGACAAAACTCACCC CAAGGGTTAATAAAT Shewana3_4203 66699 - 66304 - | hypothetical protein TERM 75 66756 - 66719 - R 79 -7.6 -4.33281 | opp_overlap 66724, overlap 66720 ACTCCAAATAAATAA GTTGCGGGTACGGCCC TTTAGT GGGCAGAACCCACAAG GGAAAAAATGCTTAA TERM 76 66755 - 66720 - R 79 -11.1 -3.18884 | opp_overlap 66724, overlap 66719 CTCCAAATAAATAAG TTGCGGGTACGGCCC TTTAGT GGGCAGAACCCACAA GGGAAAAAATGCTTA TERM 77 67518 - 67495 - R 90 -2.4 -5.92399 | opp_overlap 67502 67512, overlap 67500 67510 67511 TAATAAAATAAAAAA GAAAAGGGGT GAGA ACGCCTTTTA GGGCAATTCATCACC TERM 78 67535 - 67500 - R 91 -7 -5.58051 | gap 2, opp_overlap 67502 67512, overlap 67495 67510 67511 AAATAAAAAAGAAAA GGGGTGA-GAA-CGCC TTTTAG GGCAATTCATCACCCC AAAAAGGTAGGTTTG TERM 79 67856 - 67868 + r 89 -6.3 -5.26875 | overlap 67865 ATCTCGCCTTCAGCG TCACA AAG TGTGA TTTTTTGATTAAGGG TERM 80 67985 - 67949 - R 100 -10.2 -4.99435 | opp_overlap 67958, overlap 67950 67961 67962 TCCAATAATTAAAAA TTGGGTGAACAATCCC TGTGG GGGAATATTCACCCAC AAGGGAAGATATTTA TERM 81 67984 - 67950 - R 100 -13.7 -3.58577 | opp_overlap 67958, overlap 67949 67961 67962 CCAATAATTAAAAAT TGGGTGAACAATCCC TGTGG GGGAATATTCACCCA CAAGGGAAGATATTT TERM 82 67991 - 67961 - R 82 -10.5 -3.6279 | gap 1, opp_overlap 67958, overlap 67950 67949 67962 AAATTGGGTGAACAA TCCCT-GTGGGGGA ATAT TCACCCACAAGGGA AGATATTTAGAAAAT TERM 83 67989 - 67962 - R 83 -12 -2.77192 | opp_overlap 67958, overlap 67950 67949 67961 AATTGGGTGAACAAT CCCTGTGGGGGA ATAT TCACCCACAAGG GAAGATATTTAGAAA TERM 84 68173 - 68161 - R 74 -7.7 -3.96542 | overlap 68155 GTAAAGAAATGGAAA GCTGA TAT TCAGC GAGCCAGACGTTTAG Shewana3_4204 70252 - 68453 - | UvrD/REP helicase TERM 85 69206 - 69194 - G 74 -2.6 -5.15634 | TACGCCATCAAAAAA CGAC TTACC GCCG CGTCGATTGTACTCA Shewana3_4205 70404 - 71261 + | hypothetical protein TERM 86 71295 - 71268 - T 100 -12.1 -5.11112 | opp_overlap 71268 AAAGCCTAACAAAAA GGCCGTTACAA TAAACG CTGTAACGGCC TTTGTTTTTATACAG TERM 87 71268 - 71295 + T 100 -11.4 -4.96501 | opp_overlap 71268 AAAGCCTAACAAAAA GGCCGTTACA ATAAACGC TGTAACGGCC TTTGTTTTTATACAG Shewana3_4206 75577 - 71303 - | hypothetical protein TERM 88 71597 - 71621 + g 74 -7.9 -4.14739 | CAATCCGCGACACGT TTCGTTGTCAT GCC ATGACACCGGA TTTTGACCTAACTGA TERM 89 75246 - 75269 + g 74 -8.2 -4.1021 | gap 1, opp_overlap 75248, overlap 75250 TGTTGAGAGTCCAAC CAGTTTGTCCC AGT GGGGCA-ACTG TTTATCGTTGTCCGG Shewana3_4207 76659 - 75580 - | TraU family protein TERM 90 76141 - 76131 - G 71 -6.8 -4.19624 | CATCGGCAACACAAA TGGC GCG GCCA ACAGGATTCGCAATC Shewana3_4208 78023 - 76728 - | hypothetical protein Shewana3_4209 78510 - 78004 - | Type IV secretory pathway protease TraF-like protein TERM 91 78323 - 78335 + g 80 -3.3 -5.35459 | AACATCACCAGCTCG CCGCT ATT AACGG TTTTTTGTCGTGTGT Shewana3_4210 78585 - 79010 + | hypothetical protein TERM 92 79043 - 79063 + T 95 -5.4 -5.86332 | TTTAGACCCGTTTAA CCGAGG CTTCAACCA CCTCGG TTTTTTTTGGGTTGG Shewana3_4211 79604 - 79152 - | hypothetical protein Shewana3_4212 80062 - 79601 - | hypothetical protein TERM 93 80155 - 80187 + r 84 -10.7 -3.59627 | opp_overlap 80162, overlap 80159 80162 ATGATAATCTAGTTA TAAAAAATCCCGCAA CAA TAGCGGGATTCTTTA TTTGAACGGTTTAAT TERM 94 80159 - 80183 + r 78 -7.1 -4.42464 | opp_overlap 80162, overlap 80155 80162 TAATCTAGTTATAAA AAATCCCGCAA CAA TAGCGGGATTC TTTATTTGAACGGTT TERM 95 80180 - 80162 - R 100 -8.8 -5.28176 | opp_overlap 80162 80159 80155 TCTAGTTATAAAAAA TCCCGCAA CAA TAGCGGGA TTCTTTATTTGAACG TERM 96 80162 - 80180 + r 86 -8.8 -4.32678 | opp_overlap 80162, overlap 80159 80155 TCTAGTTATAAAAAA TCCCGCAA CAA TAGCGGGA TTCTTTATTTGAACG Shewana3_4213 84442 - 80198 - | hypothetical protein TERM 97 81795 - 81821 + g 75 -9.4 -3.89055 | TATAGCAATTGAGCC GCGAATGGCG CTTTACC CGCCATGCGC TTTATCAGGATATCT TERM 98 83149 - 83171 + g 72 -9.8 -3.42459 | AGAAATAAATAGGGT CGGCTGCGTT AAC AATGCCGCCG TTAGTGTTGTAAATC TERM 99 84494 - 84513 + r 73 -3.6 -5.03145 | opp_overlap 84494 84493 TCAGAATTATATAAG TGGATAAA TTTA TTTACCCA TTTTTTGAGCAATTA TERM 100 84614 - 84586 - R 100 -16.9 -2.52742 | opp_overlap 84589, overlap 84589 ATGTGCTTATAATAC CAAGGAGATCCCA ATA TGGGATCTCCTTA TGGAGTTGGGAAATT TERM 101 84611 - 84589 - R 100 -16.4 -3.41745 | opp_overlap 84589, overlap 84586 TGCTTATAATACCAA GGAGATCCCA ATA TGGGATCTCC TTATGGAGTTGGGAA TERM 102 84589 - 84611 + r 100 -16.4 -3.36492 | opp_overlap 84589 84586 TGCTTATAATACCAA GGAGATCCCA ATA TGGGATCTCC TTATGGAGTTGGGAA Shewana3_4214 85533 - 84628 - | hypothetical protein Shewana3_4215 87583 - 85589 - | helicase domain-containing protein TERM 103 87180 - 87200 + g 70 -2.5 -5.05782 | overlap 87197 AAACGCCCTAAATCA TCGGGGG CAATAAA CTCCTGA TTTTTTAAGATCAGT Shewana3_4216 88143 - 87652 - | hypothetical protein Shewana3_4217 88272 - 88994 + | putative signal transduction protein Shewana3_4218 91709 - 89025 - | Type IV secretory pathway VirB4 components-like protein TERM 104 89272 - 89262 - G 70 -4.6 -4.67011 | AACTTCACTGAAAAA CGGC CTA ACCG TCTTGATATTCCTCA Shewana3_4219 92450 - 91722 - | hypothetical protein Shewana3_4220 93277 - 92450 - | hypothetical protein TERM 105 93240 - 93260 + g 74 -2.5 -5.15167 | opp_overlap 93232, overlap 93242 AAACCAAGCGATACT GCTAACGCA ATT TGGGTTACC TTTTTATTGATACTC TERM 106 93448 - 93465 + H 100 -8.3 -5.54894 | opp_overlap 93449, overlap 93449 AAAGCTCACTCCAAT AGCCCGC TCTT GCGGGCA TTTTTTTGCTCCATT TERM 107 93464 - 93449 - H 86 -11.8 -3.0634 | opp_overlap 93448 93449 AAGCTCACTCCAATA GCCCGC TCTT GCGGGC ATTTTTTTGCTCCAT TERM 108 93449 - 93464 + H 100 -11.8 -3.9131 | opp_overlap 93449, overlap 93448 AAGCTCACTCCAATA GCCCGC TCTT GCGGGC ATTTTTTTGCTCCAT Shewana3_4221 93556 - 94818 + | hypothetical protein Shewana3_4222 94833 - 95180 + | hypothetical protein TERM 109 95317 - 95299 - f 100 -11.7 -4.35524 | TCCTGAAATTGAAAA CCCCAGC TCAAG GCTGGGG CAAATTCTTTAGGTC Shewana3_4223 95440 - 96366 + | hypothetical protein Shewana3_4224 96487 - 96696 + | hypothetical protein TERM 110 97089 - 97074 - T 100 -9 -5.626 | opp_overlap 97074 97073 CACTCCATAAAAAAA CCAGCA TCTC TGCTGG CTTTACTTTCTTAAT Shewana3_4225 98393 - 97320 - | hypothetical protein TERM 111 97524 - 97536 + g 70 -3.4 -4.84359 | overlap 97523 GTCTTCGAACACCTT CAGT ATCTG ACTG TTTTTCTGGCCATCG TERM 112 97586 - 97605 + g 86 -9.4 -4.4595 | CCGATGTTTCGCCTT CATTTGCA TCGA TGCAAATG TTTTCAATTTTCTCA TERM 113 97836 - 97866 + g 70 -3.2 -4.8048 | overlap 97848 AACTGTTTTGTTGTT GGCAATCTCGAG CTCGTTT TTCGCGAGTGCC TTTTTCATCTGAAAA TERM 114 98089 - 98076 - G 71 -5.3 -4.48741 | opp_overlap 98076 CAACGCATCAGAAAA TTGCA CCTT TGCAA TAGTTTTACGGATCC TERM 115 98361 - 98372 + g 71 -7.2 -3.96618 | opp_overlap 98360 98355, overlap 98360 TCTGCCAAATGGAAC GCGC TTAC GCGC TTCTTTAGCATTAGA Shewana3_4226 99600 - 98383 - | cobyrinic acid a,c-diamide synthase TERM 116 99648 - 99686 + r 71 -8.3 -3.49482 | opp_overlap 99648, overlap 99646 99682 AGATTACAGCTAAAA GGTGTGGATTTCAATAT TTGGT ACATTAAAATCCGCACC TATTTAATGGTGTGC TERM 117 99686 - 99648 - R 100 -10.5 -4.2535 | opp_overlap 99648 99646 99682 AGATTACAGCTAAAA GGTGTGGATTTCAATAT TTGGT ACATTAAAATCCGCACC TATTTAATGGTGTGC TERM 118 100840 - 100805 - R 100 -14.3 -3.14132 | opp_overlap 100812, overlap 100810 TTTTTCGTGCACTAA CCCAATAGTTTACTC GTATTT GAGTAAACTATTGAG AAAGACCAAAGGTTT TERM 119 100835 - 100810 - R 72 -9.2 -3.20723 | opp_overlap 100812, overlap 100805 CGTGCACTAACCCAA TAGTTTACTC GTATTT GAGTAAACTA TTGAGAAAGACCAAA Shewana3_4227 102038 - 100875 - | initiator RepB protein TERM 120 102554 - 102543 - H 71 -3 -4.93898 | AGATGACGAGAAAAA TCTA TGAG TAGA CGAGTAAAATCTCGG TERM 121 103222 - 103232 + G 76 -6.8 -4.53303 | AGCGAGTAGGTAGGG CGGT ATC ACCG TTTTGTGTGGAACTG Shewana3_4228 102690 - 103265 + | hypothetical protein Shewana3_4229 103338 - 103865 + | single-strand binding protein TERM 122 103902 - 103887 - f 83 -11.8 -2.70932 | opp_overlap 103887 GGGTTTGTTGAACTA GCCGCC TTCG GGCGGC TTTTGTTCTGTCCAC TERM 123 103887 - 103902 + F 100 -11.8 -4.84311 | opp_overlap 103887 GGGTTTGTTGAACTA GCCGCC TTCG GGCGGC TTTTGTTCTGTCCAC Shewana3_4230 103994 - 105601 + | hypothetical protein TERM 124 105618 - 105635 + F 100 -6.9 -5.64274 | opp_overlap 105616 105618 105620, overlap 105620 CCAGCGCTTCAAAGA CAGCTCC CATT GGAGCGG TTTTTTTGTGCGTAA Shewana3_4231 105805 - 106092 + | hypothetical protein TERM 125 106117 - 106146 + F 91 -8.6 -4.7033 | opp_overlap 106116, overlap 106118 TAAGATGTAATTTAG CCCCCTGATAGA TTTGGT TCTATCGGGGGA TTTTGTGTTAAATTG TERM 126 106118 - 106145 + F 91 -12.1 -3.41114 | opp_overlap 106116, overlap 106117 AAGATGTAATTTAGC CCCCTGATAGA TTTGGT TCTATCGGGGG ATTTTGTGTTAAATT Shewana3_4232 106224 - 106649 + | hypothetical protein Shewana3_4233 106728 - 106979 + | hypothetical protein TERM 127 107009 - 107021 + T 100 -6.2 -5.80364 | opp_overlap 107008 107009 CCTTCTAATTAATAC CCGC TTAGT GCGG TTTTTTTATTGCCAT TERM 128 107066 - 107051 - T 78 -7.5 -4.51097 | opp_overlap 107051 107050 TTAAGCATGATAAAA GGCGC TTAATC GCGCC CTTATTCTGAATAAT Shewana3_4234 108745 - 107846 - | IS605 family transposase OrfB TERM 129 108345 - 108367 + g 71 -7.1 -4.14472 | gap 1 AGCTGACGCTGCTTA CGT-CTGAGA TTCT TCTCAGCACG TTTTACAAATCTTGG Shewana3_4235 109001 - 108768 - | virulence protein VsdF Shewana3_4236 109046 - 109474 + | transposase IS200-family protein TERM 130 109489 - 109535 + T 84 -11.5 -3.14132 | overlap 109484 109483 109502 AGACGCTATCGCGTC TTACGCCTTATATCCCCGCCC TCATC GGGCGAGGGTTTACGGCGAAA TTGCTAAAACGGAAC TERM 131 109502 - 109523 + T 76 -9.4 -3.53761 | gap 1, overlap 109489 TCTTACGCCTTATAT CCC-CGCCC TCATC GGGCGAGGG TTTACGGCGAAATTG TERM 132 109562 - 109545 - T 100 -11.3 -4.17089 | opp_overlap 109538 GCGAAATTGCTAAAA CGGAACC TATC GGTTCCG TCTGCGGCTTGTATC Shewana3_4237 109891 - 109580 - | XRE family transcriptional regulator Shewana3_4238 112495 - 110255 - | hypothetical protein Shewana3_4240 113252 - 114955 + | N-6 DNA methylase Shewana3_4241 114945 - 116180 + | restriction modification system DNA specificity subunit Shewana3_4242 116180 - 116785 + | hypothetical protein Shewana3_4243 116797 - 117114 + | hypothetical protein TERM 133 117561 - 117549 - g 95 -5.5 -5.59357 | ATTACAGGAAAAAAA GGCAA CCG TCGCC CTGATGTAGTGGTGT TERM 134 118078 - 118059 - g 73 -5.8 -4.4715 | gap 1, opp_overlap 118010 GTTCAAGCGACAAAA GGCTTAGAT AAA ATC-AAGCC CGGAAGTGGTAAAGC TERM 135 119106 - 119092 - g 70 -2.8 -4.81212 | TCCATGATAAGAAAA CCAAGA AGC TCTTTG AGGCGCGATATAAAG TERM 136 119250 - 119262 + G 73 -6.2 -4.56597 | ATGCAGGCTATCGCA CGCG TAAAC CGCG TTTTTAAAGACAAAC TERM 137 120262 - 120245 - g 86 -11.3 -4.11216 | opp_overlap 120245 GGTTGACTGGCAAAA GCGCGAA AGCG TTCGCGC TCGTATGCGTAACCT TERM 138 120245 - 120262 + G 70 -11.3 -2.64735 | opp_overlap 120245 GGTTGACTGGCAAAA GCGCGAA AGCG TTCGCGC TCGTATGCGTAACCT Shewana3_4244 117132 - 120386 + | HsdR family type I site-specific deoxyribonuclease TERM 139 120413 - 120394 - T 82 -7.8 -4.52897 | opp_overlap 120394 ATAAGTAATAACAAA GGCTAGGT TTAT ACCTTGCC TTTTGAATATCTATG TERM 140 120394 - 120413 + T 79 -7.8 -4.27259 | opp_overlap 120394 ATAAGTAATAACAAA GGCTAGGT TTAT ACCTTGCC TTTTGAATATCTATG TERM 141 120625 - 120596 - T 84 -10.1 -3.85698 | opp_overlap 120601, overlap 120601 TGCTCTCTGTACAAA GAAAAGAGGCTGA CGTT CCAGCCTCTTTTA ACTATCCACACTGTA TERM 142 120620 - 120601 - T 100 -10 -4.99043 | opp_overlap 120601, overlap 120596 TCTGTACAAAGAAAA GAGGCTGA CGTT CCAGCCTC TTTTAACTATCCACA TERM 143 120601 - 120620 + T 85 -9.3 -4.2349 | opp_overlap 120601 120596 TCTGTACAAAGAAAA GAGGCTG ACGTTC CAGCCTC TTTTAACTATCCACA Shewana3_4245 121280 - 120669 - | mobile mystery protein B Shewana3_4246 121765 - 121277 - | XRE family transcriptional regulator TERM 144 121317 - 121329 + g 79 -6.9 -4.62054 | ACTTTCCACAAATCT CGGGT GCT GCCCG TTTTAATTTCATTGG TERM 145 122083 - 122065 - R 83 -11 -3.53444 | opp_overlap 122067 122069 TGATTTCTGTCCAAA CAGCGCCT GAG AGACGCTG GCTTAGGTAGGGACG TERM 146 122296 - 122278 - R 71 -6.8 -4.11484 | overlap 122259 TGGAATCGTTCAAAA TATAACCT AAT AGGTCATA AAACAGCTATCTAAA Shewana3_4247 123075 - 122362 - | TatD-related deoxyribonuclease TERM 147 122968 - 122984 + g 73 -8.7 -3.7941 | overlap 122969 AAGCCTCTTACTGCC TTCCCAG GCC CTGGGAG TTGTTGTCACGGATA Shewana3_4248 124388 - 123084 - | hypothetical protein TERM 148 124188 - 124170 - G 74 -7.4 -4.16016 | TGATCTGCGAACAAA GGTATCTG CAG CAGTTACC GCAAGCGCAATCGTC Shewana3_4249 125137 - 124385 - | hypothetical protein Shewana3_4250 126921 - 125137 - | KAP P-loop domain-containing protein Shewana3_4251 127518 - 127066 - | hypothetical protein Shewana3_4252 129604 - 127520 - | phage integrase family protein TERM 149 129046 - 129067 + g 87 -7.4 -4.98436 | overlap 129042 CAGGATGCTGCTCCT TTAAGGGT TGTTTT ACCCTTAA TTTTTGTAATGTTAA Shewana3_4253 131877 - 129607 - | hypothetical protein TERM 150 130620 - 130649 + g 71 -5.7 -4.33165 | opp_overlap 130620 130621, overlap 130621 CAAAGCTGAGAGCAA TTGTTCGACGGTT GTAA AAACGACGAACAG TTTTCCTGCGTTTAA Shewana3_4254 133129 - 131864 - | phage integrase family protein Shewana3_4255 133855 - 133553 - | hypothetical protein TERM 151 133815 - 133827 + g 85 -4.1 -5.49729 | overlap 133813 CCCATAACATTTTCG TCATC GCC GGTGA TTTTTTTGGCTGCTT Shewana3_4256 134134 - 133865 - | hypothetical protein Shewana3_4257 134677 - 134135 - | hypothetical protein Shewana3_4258 136039 - 134681 - | TraB pilus assembly family protein Shewana3_4259 137258 - 136041 - | putative periplasmic protein TERM 152 137070 - 137080 + g 71 -5.4 -4.52345 | AACCGATAATGCAGT TTGG GTA CCAA TTTCTTTGCTCGTAT Shewana3_4260 137962 - 137306 - | hypothetical protein TERM 153 137447 - 137457 + g 82 -6.8 -4.8622 | overlap 137435 CATGGGATTGCCGTT TCGG ATC CCGA TTTTTAATTCAAAGG Shewana3_4261 138256 - 137972 - | hypothetical protein TERM 154 138299 - 138278 - R 100 -8.1 -5.75342 | gap 1, opp_overlap 138278 CCCCTTGAAAAAAAA GGGTGCATAT AAG AT-TGCACCC TTCCTTGATACCGCA Shewana3_4262 138615 - 138328 - | hypothetical protein Shewana3_4263 139476 - 138841 - | hypothetical protein TERM 155 139450 - 139438 - G 73 -9.1 -3.67175 | opp_overlap 139438 139437 139435 AGCCGCTAAAATCAA CCTGC CGT GCAGG GTCTTACTCTCAACT Shewana3_4264 141363 - 139489 - | hypothetical protein TERM 156 140473 - 140444 - G 71 -10.8 -3.09516 | opp_overlap 140451, overlap 140447 CGGTTTAGCATGTAA TCAGCGACCATC TTGATT GATGGTCGCTTA CCGATAAAACGTAAT TERM 157 140470 - 140447 - G 77 -12.5 -2.76263 | opp_overlap 140451, overlap 140444 TTTAGCATGTAATCA GCGACCATC TTGATT GATGGTCGC TTACCGATAAAACGT TERM 158 141340 - 141310 - G 70 -10.5 -2.93393 | opp_overlap 141310, overlap 141309 TTGGATTTCATAAAT CGGCCTATACATG TTCTC CATGAATAAGCCG TTAGTCTCGATGCTT Shewana3_4265 144181 - 141356 - | relaxase TERM 159 141449 - 141463 + g 100 -7.1 -5.52384 | GCCTGCTGTGCGCTT GAGGC TAGTC GCCTC TTTTTTTGCTAACCC TERM 160 143325 - 143335 + g 80 -2.4 -5.45726 | opp_overlap 143325 TCTTTGTGGACGGAA CGCG CTT CGCC TTTTTTTAGACTGTC TERM 161 144161 - 144171 + g 76 -5.4 -4.81852 | opp_overlap 144150 144148, overlap 144150 AACAGCCAAACTAAC TAGC TTG GCTA TTTTCTTCATTATGC Shewana3_4266 144900 - 144181 - | hypothetical protein TERM 162 144902 - 144918 + r 70 -5.9 -4.26188 | opp_overlap 144905 TTGGTCTGACTCATA TAATCCT CCT AGGATTG TTTTCGCTCTATGCG Shewana3_4267 145329 - 144910 - | hypothetical protein TERM 163 146031 - 146019 - H 83 -9.1 -4.10855 | opp_overlap 146018 AAAACCCTCTTAAAA CCCCA GAT TGGGG GTCATTTGGTGTGGA TERM 164 146283 - 146297 + G 70 -10 -3.28791 | GGACCTCGGTCGGTT CGCGAA ATG TTCGCG TTCTCAACACAGAAT Shewana3_4268 146057 - 147124 + | hypothetical protein Shewana3_4269 147133 - 147420 + | hypothetical protein TERM 165 147458 - 147432 - f 70 -3.6 -4.76802 | opp_overlap 147435, overlap 147433 147435 GTGAAAAACAATAAA TCAGCCGCCT GCAATTA AGGCGGCTTT TTTTCATCCAGTGAG TERM 166 147455 - 147435 - f 76 -9.7 -3.26101 | opp_overlap 147435, overlap 147433 147432 AAAAACAATAAATCA GCCGCCT GCAATTA AGGCGGC TTTTTTTCATCCAGT TERM 167 147435 - 147455 + F 100 -9.7 -5.52986 | opp_overlap 147435 147433 147432 AAAAACAATAAATCA GCCGCCT GCAATTA AGGCGGC TTTTTTTCATCCAGT TERM 168 147793 - 147779 - g 76 -6.4 -4.63218 | overlap 147780 GTGGTTCCAAGAAAA CTTGCC CAA GGCAAA GGAGTTGGCGCTTAA Shewana3_4270 147519 - 148514 + | hypothetical protein Shewana3_4271 148511 - 149905 + | hypothetical protein TERM 169 150125 - 150141 + G 74 -4.4 -4.75174 | overlap 150127 ACTTACATGTTTTTG TTCACC CCGAA GGTGGA TTTTTACGTTGAGTC TERM 170 150928 - 150942 + G 76 -2.8 -5.14626 | TGCCCCTGCACTTAT CACTTG GTT TGAGTG TTTTATTTTCCTCAT TERM 171 151339 - 151328 - g 91 -7.2 -5.0916 | GGGGCAACACAAAAA GCCC AAAT GGGC GCCAACATGGATGCC TERM 172 152586 - 152563 - g 79 -11.1 -3.63515 | GGGGATTGTTAATAA TTCGCAGAC TCTTAT GTCTGCGAA TGGAAAACCAATTCC TERM 173 153234 - 153212 - g 80 -10.6 -3.76759 | opp_overlap 153211 153212, overlap 153202 ATGAAGGTGATGAAA TCAGCTGCAG AGT CTCCAGCTGA ATTGTCTAGGGTGCT TERM 174 154230 - 154220 - g 70 -8.2 -3.67597 | GCGGTGAGCCAACAA GGCG CAG CGCC TGCAACTACGGCTCA TERM 175 154326 - 154316 - g 70 -8.2 -3.67775 | ACGGTGAGCCAACAA GGCG CAG CGCC TGCAACTACGGCTCA TERM 176 154422 - 154412 - g 70 -8.2 -3.67775 | ACGGTGAGCCAACAA GGCG CAG CGCC TGCAACTACGGCTCA TERM 177 154518 - 154508 - g 70 -8.2 -3.67775 | ACGGTGAGCCAACAA GGCG CAG CGCC TGCAACTACGGCTCA TERM 178 154662 - 154652 - g 70 -8.2 -3.67597 | overlap 154653 GCGGTGAGCCAACAA GGCG CAG CGCC AGCGGCCACGGCTCA TERM 179 154710 - 154700 - g 70 -8.2 -3.67775 | overlap 154653 ACGGTGAGCCAACAA GGCG CAG CGCC TGCAACTACGGCTCA TERM 180 154806 - 154796 - g 70 -8.2 -3.67775 | ACGGTGAGCCAACAA GGCG CAG CGCC TGCAACTACGGCTCA Shewana3_4272 149909 - 155239 + | hypothetical protein TERM 181 155259 - 155276 + F 100 -12.7 -5.75945 | opp_overlap 155258 155257 TTGAGGTTTTAAATT CGGCGGT TTTT ACCGCCG TTTTTTTTGGGAAAT Shewana3_4273 155350 - 156240 + | hypothetical protein Shewana3_4274 156254 - 156799 + | hypothetical protein TERM 182 156881 - 156848 - T 100 -13.5 -3.33151 | gap 1, opp_overlap 156857, overlap 156857 TTTTTGAAATTAAGA TATAAAAAAGCTGGGA ATG TCCCAGCTTTTTT-TA GGAAATTAACCTTGA TERM 183 156873 - 156857 - T 100 -12.3 -5.47431 | opp_overlap 156857, overlap 156848 TTAAGATATAAAAAA GCTGGGA ATG TCCCAGC TTTTTTTAGGAAATT TERM 184 156857 - 156873 + T 100 -12.3 -5.41746 | opp_overlap 156857 156848 TTAAGATATAAAAAA GCTGGGA ATG TCCCAGC TTTTTTTAGGAAATT Shewana3_4275 157792 - 156887 - | hypothetical protein TERM 185 157699 - 157717 + g 86 -5.2 -5.30189 | AGGTTATCATCTTCT CCGAAGCA ACT TGCTCTGG TTTTTTGATGTTATC Shewana3_4276 158808 - 157936 - | site-binding protein, DNA replication region Shewana3_4277 158929 - 159672 + | OmpA/MotB domain-containing protein Shewana3_4278 159748 - 160467 + | hypothetical protein TERM 186 160634 - 160649 + F 83 -9 -4.21194 | TCTTGTCATTTGATT CTGGGA TAAC TCCCAG TTTTAAATGGTAGGC Shewana3_4279 160852 - 161304 + | hypothetical protein Shewana3_4280 161679 - 164060 + | putative periplasmic protein TERM 187 165218 - 165234 + G 74 -2.3 -5.10461 | opp_overlap 165233 CTTCAAAATCCCCAG TGTTG ACGTCAG CAACA TTTTTGTTAAATGAC Shewana3_4281 164071 - 166488 + | hypothetical protein Shewana3_4282 167286 - 166549 - | IS4 family transposase TERM 188 167027 - 167040 + g 76 -5.2 -4.87291 | opp_overlap 167027 GCAAGGTGCAACTTA CGCC AAGTTC GGCG TTTTTCCTTACCATG Shewana3_4283 167466 - 167296 - | transposase Shewana3_4284 168783 - 167962 - | integrase catalytic subunit TERM 189 168707 - 168720 + g 86 -5.9 -5.1101 | GGTATTCTGTATTTA CGCGC TAAT GTGCG TTTTTTGAGTGATAA TERM 190 169136 - 169161 + G 71 -6.9 -4.26589 | TTAATCATGATGTTT GTTTTACTGAC GTTT GTCGGTCAAAC TTTTGCGTCTGTGAT Shewana3_4285 169058 - 169498 + | hypothetical protein Shewana3_4286 169635 - 170150 + | hypothetical protein TERM 191 170846 - 170836 - g 91 -6.8 -5.08601 | TGACGTGAATAAAAA TGGC TTA GCCA ATACGTGGAACGCTC Shewana3_4287 170147 - 172075 + | CopA family copper resistance protein Shewana3_4288 172099 - 172812 + | copper resistance B precursor Shewana3_4289 172928 - 173350 + | copper resistance protein CopC Shewana3_4290 173365 - 174261 + | copper resistance D domain-containing protein Shewana3_4291 174337 - 174780 + | putative orphan protein TERM 192 174889 - 174904 + T 89 -6.2 -5.36441 | ATGCATGATATTTTA TGGAAA AGGA TTTCCA TTTTTTATATAAAAA TERM 193 174939 - 174921 - T 89 -6.7 -5.36441 | opp_overlap 174921 TTTTTATATAAAAAA GACCGGA GTAAT TCCAGTC CTTTTACAAGCCATA Shewana3_4292 175514 - 174969 - | hypothetical protein TERM 194 175394 - 175411 + g 70 -9.9 -3.30918 | overlap 175392 TTTTGTATAGTGTAT GTGCTGT TGTA ACAGCAC TCTTATAGTCTAAAT TERM 195 175743 - 175762 + H 73 -7.2 -4.1413 | overlap 175753 175757 CATATAATTTTTCTA CCTAAGTT TTTA AACTTGGG TTTTAAACCTATGTT TERM 196 175753 - 175779 + H 75 -7.4 -4.31688 | overlap 175743 175757 175776 TTCTACCTAAGTTTT TAAACTTGGGTT TTA AACCTATGTTTA TTTTAAATTAATATT Shewana3_4293 175971 - 177167 + | outer membrane porin TERM 197 177355 - 177345 - f 90 -4 -5.61596 | opp_overlap 177345 ACGTTTACAAAAAAA TTCA TCT TGAA TGTATTTTAGAACCA TERM 198 177624 - 177668 + F 100 -18.2 -2.53213 | overlap 177616 ACGGACGGCATCGAT TATGCTCTTATGCTCTCTTT TTCTT ATAGAGAGCATAAGAGCATG TACCTTGAAGCCTTC Shewana3_4294 177633 - 177914 + | hypothetical protein TERM 199 177965 - 177986 + T 72 -9.4 -3.13522 | overlap 177963 GCTGGATATTCATTT CCTGGCGT ACTCTG ACGCCGGG TATTGATGAAGCAAT Shewana3_4295 179559 - 178084 - | sensor kinase CusS TERM 200 178933 - 178920 - G 70 -9.5 -3.24747 | TGCTGACATTACGAA GGGGC AGGT GCCCC TGACGGACAGCGATG Shewana3_4296 180232 - 179552 - | DNA-binding transcriptional activator CusR TERM 201 180317 - 180304 - H 75 -5.3 -4.82667 | opp_overlap 180304, overlap 180288 GGATTACAGCAAAAA TGACA ACAT TGTCA TTATCCTGTCACCCG TERM 202 180903 - 180893 - g 70 -8.2 -3.67597 | TTTGCCAGCGAAGAA GCCC GTC GGGC TGTACATATCCTGCT Shewana3_4297 180422 - 181807 + | copper/silver efflux system outer membrane protein CusC Shewana3_4298 181836 - 182189 + | periplasmic copper-binding protein Shewana3_4299 182303 - 183595 + | copper/silver efflux system membrane fusion protein CusB TERM 203 185232 - 185218 - g 73 -5.7 -4.59109 | opp_overlap 185223 185225 TACACTGGCCAAAAA CAACC CTGCT GGTTG CGGCTTTATCCATTT TERM 204 185810 - 185792 - g 76 -11 -3.26471 | overlap 185802 185803 TGATGTGGACATTAA CCGGGAAA AAG CTTCCCGG TACGGGATGACTGTG TERM 205 185820 - 185802 - g 70 -4.4 -4.62872 | overlap 185792 185803 ATTAACCGGGAAAAA GCTTCCCG GTA CGGGATGA CTGTGGGCGACGTCC Shewana3_4300 183606 - 186752 + | CzcA family heavy metal efflux protein TERM 206 186781 - 186761 - f 73 -8.2 -3.66178 | opp_overlap 186761 GTCCTGAACCTGAAA GGGCACCC CCTGT GGGTGTCC TTCTTTACTGATTCA TERM 207 186761 - 186781 + F 89 -10.4 -4.04927 | opp_overlap 186761 GTCCTGAACCTGAAA GGGCACCC CCTGT GGGTGTCC TTCTTTACTGATTCA TERM 208 186797 - 186810 + F 74 -8.1 -4.07124 | TTCTTTACTGATTCA CCCTG ACGT CAGGG TTTATATCGATAATA Shewana3_4301 186848 - 187279 + | hypothetical protein TERM 209 188176 - 188189 + G 76 -5.9 -4.64861 | overlap 188177 GTTCAGAAACATGGA TGGCC TGGT GGCCG TTTATTTTGAAGCCG Shewana3_4302 187406 - 189853 + | heavy metal translocating P-type ATPase TERM 210 189927 - 189940 + T 70 -9.5 -2.77043 | overlap 189926 GCGCTTATTGCTGTC GCCGC GATC GCGGC ATTTGCCCTCCTGCG TERM 211 190101 - 190121 + T 100 -16.1 -3.35996 | opp_overlap 190093 190092 190089 AATTAATCCGGCAGA CGGGGCCGC GTC GCGGTCCCG TTATCAGTCCAGGTA Shewana3_4303 190862 - 190125 - | peptidase M23B Shewana3_4304 191600 - 191151 - | hypothetical protein TERM 212 191699 - 191720 + r 71 -4.5 -4.68209 | opp_overlap 191689, overlap 191701 TGTAATACAGCTATG TACATTACA CGAT TGTAATGAA TTTGTTTCTTAAGGT Shewana3_4305 193609 - 192443 - | methyl-accepting chemotaxis sensory transducer TERM 213 193796 - 193808 + r 84 -6.3 -4.96848 | opp_overlap 193796 193795 CGACTGAGAAAAACT TGACT ATT AGTCA TTTTTATATCAACCA Shewana3_4306 195232 - 194552 - | IS4 family transposase TERM 214 195030 - 195043 + g 76 -5.2 -4.87291 | opp_overlap 195030 GCAAGGTGCAACTTA CGCC AAGTTC GGCG TTTTTCCTTACCATG Shewana3_4307 198304 - 195317 - | transposase Tn3 family protein TERM 215 195707 - 195692 - G 73 -5.4 -4.7373 | GTATTCCAGCAAAAA CATGGT TCTG ACCACG CGCCCGAGTTCACGG Shewana3_4308 199047 - 198421 - | hypothetical protein Shewana3_4309 199837 - 199403 - | MerR family transcriptional regulator Shewana3_4310 200657 - 199857 - | diguanylate phosphodiesterase TERM 216 199895 - 199926 + g 84 -15.2 -2.80816 | gap 1 ACGCTTCAGTCGTTT CGGC-ATCGGCTGGC CGC GCCAGCCGATAGCCC TGTAATACATCACAG Shewana3_4311 202324 - 200669 - | putative mercuric reductase Shewana3_4312 202781 - 202362 - | putative mercury transport protein MerC TERM 217 202426 - 202412 - G 73 -2.8 -5.00616 | TCGCGGGTGAAAAAA TATCCC AAA GCGATA CGGCAACCATCAGGC Shewana3_4313 203060 - 202785 - | mercuric transport protein periplasmic component Shewana3_4314 203463 - 203116 - | mercuric transporter MerT Shewana3_4315 203949 - 203557 - | MerR family transcriptional regulator Shewana3_4316 204968 - 203946 - | phage integrase family protein TERM 218 204474 - 204439 - G 100 -17.8 -2.85351 | gap 1, overlap 204462 GGTTCCCACACCAGA TCACCGTAGCGAA-TGG CCA CCAATTCGCTACGGCGA AAGGCACCGAAAAAG TERM 219 204504 - 204489 - G 79 -6.8 -4.69027 | overlap 204481 AAAGGCACCGAAAAA GCCGGT CAAC ACCAGC GCGATATCCCTCAGT Shewana3_4317 205173 - 206222 + | chromosome segregation ATPases-like protein Shewana3_4318 209230 - 206336 - | transposase Tn3 family protein Shewana3_4319 209793 - 209233 - | resolvase domain-containing protein Shewana3_4320 210998 - 209919 - | signal peptidase II TERM 220 210269 - 210247 - G 70 -10.6 -2.91276 | overlap 210246 GCGTTCGCCAGAAAG CTGAATGCCG CGC CGGGATTCAG GACATGGACGAAGTT TERM 221 210628 - 210646 + g 70 -10.2 -2.89267 | AGCGCGGCATAGGTG GCATGCCC GCT GGGCAGGC TGTAGTGTCGTTCGA TERM 222 213461 - 213441 - H 74 -6.9 -4.2558 | overlap 213442 CAGCCTCCATTAAAA TCTCTATAG TCA CTATAGAGT CAAGTGATAATTGGA TERM 223 213460 - 213442 - H 77 -10.4 -3.15027 | overlap 213441 AGCCTCCATTAAAAT CTCTATAG TCA CTATAGAG TCAAGTGATAATTGG TERM 224 213514 - 213499 - g 70 -9 -3.61609 | GCATGGAAATCAGAA TTGGCG ACCT CGCCAA GCGCTCTGGGTGCGA Shewana3_4323 213486 - 213926 + | MerR family transcriptional regulator Shewana3_4324 215089 - 214517 - | methionine sulfoxide reductase A Shewana3_4325 215586 - 215086 - | methionine sulfoxide reductase A Shewana3_4326 216035 - 215589 - | methionine sulfoxide reductase B TERM 225 216087 - 216100 + r 70 -5.3 -4.50159 | AGATTATAAGAGACC TTCTG TTTA CAGAA TTTATTTCACTTAGG Shewana3_4327 216787 - 216272 - | hypothetical protein Shewana3_4328 217479 - 216925 - | alkylhydroperoxidase TERM 226 218703 - 218725 + G 80 -4.8 -5.08601 | GAAATTTGTCAGGCT GTTGGCAGTG TGT CAGTACCAAC TTTTTATTGCGGTGA Shewana3_4329 218568 - 219854 + | hypothetical protein TERM 227 220397 - 220421 + F 78 -5.1 -4.96848 | opp_overlap 220389, overlap 220398 220401 TGACAGATCTATGCT AGAGTTAAATC AAC GATTTAATTCA TTTTTCTATGCAGGA TERM 228 220398 - 220420 + F 73 -8.6 -3.57627 | opp_overlap 220389, overlap 220397 220401 GACAGATCTATGCTA GAGTTAAATC AAC GATTTAATTC ATTTTTCTATGCAGG Shewana3_4330 220472 - 221449 + | diguanylate cyclase with GAF sensor Shewana3_4331 222331 - 221669 - | methionine sulfoxide reductase A TERM 229 221996 - 221983 - G 95 -5.3 -5.65496 | GATCAAAAACAAAAA GTATC TGGC GATAC TGGCCCTGCTTTCTA Shewana3_4332 222782 - 222537 - | hypothetical protein Shewana3_4333 223277 - 222837 - | methionine-R-sulfoxide reductase Shewana3_4334 223545 - 223309 - | glutaredoxin Shewana3_4335 224061 - 223573 - | peptide methionine sulfoxide reductase Shewana3_4336 224184 - 225119 + | AraC family transcriptional regulator Shewana3_4337 225122 - 225862 + | hypothetical protein TERM 230 225998 - 226045 + T 73 -3.5 -4.99035 | overlap 226003 GGAATTGTCGGTTGG GTGAGACTTAGTCGCCCCG-TAA AGCC TTATCGGGGCGGCAAAGA-TAAC TTTTTATATCACTGC Shewana3_4338 226336 - 226049 - | hypothetical protein Shewana3_4339 226703 - 227731 + | integrase catalytic subunit Shewana3_4340 227805 - 228281 + | hypothetical protein Shewana3_4341 229144 - 228689 - | putative transcriptional regulator MerR TERM 231 228967 - 228953 - G 79 -11.4 -3.59979 | opp_overlap 228951 TTCGTCCAGGCTAAA GCCCAG CCG CTGGGC CGATTTCACGAACCG TERM 232 229328 - 229348 + G 79 -8.1 -4.28361 | CCATTCTTGCGTCGG CCTGCTGCC TGG GGCCGCTGG TTTTGATCGCCTTGG TERM 233 229430 - 229446 + G 90 -9.4 -4.62069 | CGATCTTCATCGGCG CAGCGC TGGTC GCGCTG TTTTTCGCCTGGCGG Shewana3_4342 229216 - 229611 + | putative mercuric transport protein Shewana3_4343 229627 - 229902 + | mercuric transport protein periplasmic component Shewana3_4344 229930 - 230355 + | putative mercury transport protein MerC TERM 234 230375 - 230347 - f 81 -9.6 -3.8062 | gap 1, overlap 230348 GAATTGCCAGAACAA CGTGGCTGACGGC AACA GCCGT-AGCCACC ACAGAAAAGGAAAAA TERM 235 230374 - 230348 - f 91 -13.1 -2.8789 | gap 1, overlap 230347 AATTGCCAGAACAAC GTGGCTGACGGC AACA GCCGT-AGCCAC CACAGAAAAGGAAAA Shewana3_4345 230394 - 232079 + | putative mercuric reductase Shewana3_4346 232097 - 232462 + | transcriptional regulator MerD Shewana3_4347 232459 - 232695 + | putative mercury resistance protein Shewana3_4348 232761 - 232973 + | hypothetical protein TERM 236 233773 - 233742 - g 76 -6.4 -4.72029 | overlap 233744 GGGAATCGAACAAAA GTGGGCTATGCGGC GAGA ACTGCTTAGCCCTC AGTACACAACCAAGT Shewana3_4349 233152 - 233817 + | umuC protein Shewana3_4350 235905 - 234373 - | hypothetical protein Shewana3_4351 236840 - 235902 - | patatin Shewana3_4352 238486 - 236921 - | hypothetical protein Shewana3_4353 238871 - 238479 - | hypothetical protein Shewana3_4354 240675 - 238948 - | UBA/THIF-type NAD/FAD binding protein TERM 237 240599 - 240576 - G 70 -9.6 -3.24188 | opp_overlap 240579 GTATACCATGATTAA GGATCGTTGT TTCC ACTACGATCC TCTCACCTCCAGCTA Shewana3_4355 241708 - 240677 - | hypothetical protein Shewana3_4356 241909 - 242253 + | XRE family transcriptional regulator Shewana3_4357 242263 - 243072 + | hypothetical protein TERM 238 243662 - 243678 + T 75 -5.1 -4.87626 | opp_overlap 243662 243658 CAAGTCAACAAGTAA TGTGCGA TAT TCACACA TTTTTGCTATTGCGA Shewana3_4358 244595 - 243930 - | phage integrase family protein TERM 239 244529 - 244502 - G 70 -9.2 -3.64915 | overlap 244496 CGTGAGAAAGTACAA CAGCACAGCG TTTACCTT CGCTATGCTG CATGAGTTGGCAGGT TERM 240 244590 - 244638 + g 78 -3.9 -5.09895 | overlap 244591 TAGTGCGTCAGCGCG GCTCATTGTCTGTATTTCCTC TTTATTT GGGGATATGCAGACAATAGGA TTTTTTCACTGCCTA TERM 241 244699 - 244714 + r 86 -11.8 -3.08211 | opp_overlap 244699, overlap 244696 TCACGGAAAGCAAAA GCGCCC CGAA GGGCGC TAGTTTTGGAGGACT TERM 242 244714 - 244699 - R 100 -11.8 -4.56914 | opp_overlap 244699 244696 TCACGGAAAGCAAAA GCGCCC CGAA GGGCGC TAGTTTTGGAGGACT Shewana3_4359 245080 - 244733 - | hypothetical protein TERM 243 245108 - 245092 - R 100 -12.3 -3.68261 | opp_overlap 245092, overlap 245083 TCATAAGACTCCAAA GCCCTGT ATT ACAGGGC TTAATAAATTTGATG TERM 244 245092 - 245108 + r 95 -12.3 -3.25802 | opp_overlap 245083 245092 TCATAAGACTCCAAA GCCCTGT ATT ACAGGGC TTAATAAATTTGATG TERM 245 245559 - 245547 - R 100 -10.5 -5.38497 | opp_overlap 245547 245546 ACGGAAAGCAAAAAA CGCCC GAA GGGCG CTTATTATGATAATT TERM 246 245547 - 245559 + r 76 -10.5 -2.91438 | opp_overlap 245547, overlap 245546 ACGGAAAGCAAAAAA CGCCC GAA GGGCG CTTATTATGATAATT Shewana3_4360 245894 - 245592 - | hypothetical protein Shewana3_4361 247450 - 246302 - | hypothetical protein Shewana3_4362 247614 - 249209 + | phosphoadenosine phosphosulfate reductase Shewana3_4363 252246 - 249259 - | transposase Tn3 family protein TERM 247 249560 - 249541 - G 70 -4.2 -4.62085 | overlap 249542 ATTCGCAAAAAACAA CCAACGTG CAAA CTCGTTGA ACTCCTCACTCTTAC TERM 248 249717 - 249731 + g 70 -2.8 -4.84363 | overlap 249725 CGAACCGGCGCAGGA TTGTCG AGG CGGTAA TTTTTCCTGCTTTAA TERM 249 250404 - 250382 - G 78 -6.2 -4.77567 | ACCGTCAGAACAAAA CGTAACACCG GGT CGCTGATACG TGACTCGAAACCCGA TERM 250 252403 - 252443 + r 73 -5.3 -4.67556 | opp_overlap 252409, overlap 252395 252404 GATTGGTTGCGCCGA AGCGAATGGTATGCCCCCT AAG AGAAGGCATACCAATAGCG TTTTTAGGATGTTGT TERM 251 252404 - 252442 + r 71 -8.8 -3.39449 | opp_overlap 252409, overlap 252395 252403 ATTGGTTGCGCCGAA GCGAATGGTATGCCCCCT AAG AGAAGGCATACCAATAGC GTTTTTAGGATGTTG TERM 252 252437 - 252409 - R 100 -14.7 -3.17075 | opp_overlap 252404 252403 TTGCGCCGAAGCGAA TGGTATGCCCCCT AAG AGAAGGCATACCA ATAGCGTTTTTAGGA Shewana3_4364 253058 - 252447 - | manganese and iron superoxide dismutase Shewana3_4365 254617 - 253250 - | chromate transporter Shewana3_4366 255548 - 254610 - | chromate resistance exported protein TERM 253 255182 - 255172 - G 70 -2.4 -5.02074 | TCACCGGGGAAAAAA TCCG TTG CGGC GATAGCGGTGAAGTT Shewana3_4367 256713 - 255706 - | phage integrase family protein Shewana3_4368 256919 - 257974 + | chromosome segregation ATPases-like protein Shewana3_4369 258087 - 258452 + | hypothetical protein TERM 254 258504 - 258537 + T 86 -11.3 -3.33708 | opp_overlap 258507, overlap 258507 TTGTCACTGGTGTAA TAATGGTAATCAACA GAGA TATTGATTACCATTA TTAATGTGTCGATTA TERM 255 258507 - 258534 + T 75 -8.6 -3.80018 | opp_overlap 258507, overlap 258504 TCACTGGTGTAATAA TGGTAATCAACA GAGA TATTGATTACCA TTATTAATGTGTCGA TERM 256 258534 - 258507 - T 84 -10.8 -3.62046 | opp_overlap 258504 258507 TCACTGGTGTAATAA TGGTAATCAACA GAGA TATTGATTACCA TTATTAATGTGTCGA Shewana3_4370 259220 - 258642 - | hypothetical protein Shewana3_4371 259845 - 259417 - | hypothetical protein TERM 257 259459 - 259475 + g 74 -12.3 -2.86271 | opp_overlap 259443 259442 259455 259454, overlap 259455 CCCGACCAAATTCTT TGGCGGA GTG TCCGCCA TGATTCTAATGGACG TERM 258 260277 - 260252 - H 74 -10.6 -2.71731 | opp_overlap 260244 TCTATTTTGTAATCA TGTCCGATAA TTACAG TTATCGGACA CGAGTACCCACCAGC Shewana3_4372 260617 - 262353 + | hypothetical protein TERM 259 262369 - 262394 + F 100 -11.2 -4.39571 | TCCCTCCCATTCAGA CGGCGCAAAG TTCAAT TTTTGCGCCG TTTTGCATTTGTGAG Shewana3_4373 262445 - 262816 + | hypothetical protein Shewana3_4374 262816 - 263064 + | hypothetical protein Shewana3_4375 263170 - 263847 + | hypothetical protein Shewana3_4376 263924 - 264508 + | hypothetical protein Shewana3_4377 264486 - 265601 + | phage integrase family protein Shewana3_4378 265680 - 266051 + | hypothetical protein Shewana3_4379 266060 - 266965 + | hypothetical protein Shewana3_4380 267244 - 266975 - | hypothetical protein Shewana3_4381 267979 - 267647 - | hypothetical protein Shewana3_4382 268531 - 268001 - | hypothetical protein Shewana3_4383 269246 - 268551 - | hypothetical protein TERM 260 269208 - 269226 + g 75 -8.9 -3.82531 | opp_overlap 269207 269210 ACCTATTAATCCAAC CATCAGC AACAA GCTGATG TTTAATAGCTTATTT Shewana3_4384 272379 - 269236 - | CzcA family heavy metal efflux protein TERM 261 269627 - 269617 - G 79 -6.8 -4.60797 | GGCTGAGATAGAAAA GGGA ATG TCCC GTAACAATAATGCGG Shewana3_4385 273635 - 272391 - | secretion protein HlyD TERM 262 273212 - 273229 + g 71 -6.3 -4.31688 | opp_overlap 273207, overlap 273217 273219 GGCCTTCAAAGTTGT CATACTG CCAA CGGTATG TTTTACCTTGGTATT Shewana3_4386 274927 - 273644 - | outer membrane efflux protein TERM 263 274502 - 274522 + g 83 -5.5 -5.07275 | opp_overlap 274502 AGCCACCTGTGAAGA CAAATCCAA GGC TTTGATTTG TTTTTCTATATCTAA TERM 264 274891 - 274877 - G 71 -5.7 -4.32049 | opp_overlap 274877 CACAATGGAGGAAAA CCGAT AGCCA ATCGG TTTTTTAGTTCTGAC TERM 265 274877 - 274891 + g 90 -5.7 -5.32944 | opp_overlap 274877 CACAATGGAGGAAAA CCGAT AGCCA ATCGG TTTTTTAGTTCTGAC Shewana3_4387 275921 - 274941 - | peptidase M56, BlaR1 TERM 266 275588 - 275570 - G 77 -8.9 -4.0641 | TTTTACGTACATAAA TGGTCGA GATCA TCGACCA TATCAAATAACCGAA TERM 267 275745 - 275724 - G 70 -3 -4.82901 | gap 1, opp_overlap 275702, overlap 275702 CCTTGGCCAGAAAAA GGCAGCACA GCTTA TG-GCTACC CACCAAGGTACAGTA Shewana3_4388 276307 - 275930 - | transcriptional regulator, TrmB TERM 268 276355 - 276369 + H 85 -5.7 -5.0916 | opp_overlap 276349 276355, overlap 276349 GTGACAGAATAAAAA CCGAT AGGCA ATCGG TTTTTCTATTCAAGG TERM 269 276369 - 276355 - H 85 -5.7 -5.24796 | opp_overlap 276355 276349, overlap 276349 GTGACAGAATAAAAA CCGAT AGGCA ATCGG TTTTTCTATTCAAGG Shewana3_4389 276395 - 276745 + | hypothetical protein Shewana3_4390 277758 - 276877 - | LysR family transcriptional regulator TERM 270 277056 - 277043 - G 78 -3.8 -5.14563 | TCTTGGATTAAAAAA GCAG GAATTG CTGC CCAACCCAAACCCCG Shewana3_4391 277887 - 278324 + | transmembrane pair domain-containing protein SEQUENCE gi|117918459|ref|NC_008577.1| Shewanella sp. ANA-3 chromosome 1, complete sequence (length 4972204) gidB 659 - 39 - | glucose-inhibited division protein B TERM 1 751 - 718 - R 84 -11 -3.58037 | opp_overlap 725 TATGAAGCCCTGAAA CGTCGAAGGGAAGC CTGAAT GCTTCCCTTCTGCG ACCAAACTGGCGATT TERM 2 725 - 744 + r 74 -9.3 -3.28791 | opp_overlap 718 CCCTGAAACGTCGAA GGGAAGC CTGAAT GCTTCCC TTCTGCGACCAAACT Shewana3_0002 2666 - 777 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3 1999 - 2009 + g 74 -8.2 -3.98214 | opp_overlap 1983 1998 GACATCACAGGTAAT GGCG TGT CGCC TTTCTGCTCAGTCAT Shewana3_0003 3547 - 3107 - | flavodoxin TERM 4 4291 - 4303 + G 74 -4.1 -4.98255 | CGGTGTGTTGATGTT TATCG CCA CGGTA TTTTTCTGGTTAGGC Shewana3_0004 3725 - 5272 + | TGF-beta receptor, type I/II extracellular region TERM 5 5310 - 5338 + T 100 -12.6 -5.52023 | gap 1, opp_overlap 5310 CCTTTAAATAAAAAA TCAGCCC-CTAAG CGAA CTTAGTGGGCTGA TTTTTTATTGCTCGT TERM 6 5338 - 5310 - T 100 -12.6 -5.63517 | gap 1, opp_overlap 5310 CCTTTAAATAAAAAA TCAGCCC-CTAAG CGAA CTTAGTGGGCTGA TTTTTTATTGCTCGT trmE 6737 - 5376 - | tRNA modification GTPase TrmE TERM 7 6801 - 6773 - R 89 -12.5 -2.84053 | opp_overlap 6778, overlap 6778 TCAAATCATCTAAAG GAAAAGGCGGCTC ATT AAGCCGCCTTTTT GCATATGCTGAGCCG TERM 8 6796 - 6778 - R 100 -12.4 -4.56914 | opp_overlap 6778, overlap 6773 TCATCTAAAGGAAAA GGCGGCTC ATT AAGCCGCC TTTTTGCATATGCTG TERM 9 6778 - 6796 + r 100 -11.7 -4.7173 | opp_overlap 6778 6773 TCATCTAAAGGAAAA GGCGGCT CATTA AGCCGCC TTTTTGCATATGCTG TERM 10 6838 - 6852 + r 76 -2.8 -5.36441 | CTTATCTAGCGCTTG GGGTTA TTT TAAGCC TTTTTTCTCTAGACC Shewana3_0006 8466 - 6841 - | protein translocase subunit yidC TERM 11 7015 - 7028 + g 76 -3.1 -5.08824 | TGGGTCCATGGTCGG TGCGA TGGG TTGCA TTTTTTGCATCACAA Shewana3_0007 8724 - 8470 - | hypothetical protein Shewana3_0008 9047 - 8691 - | ribonuclease P protein component TERM 12 9031 - 8997 - GH 100 -13 -3.76607 | GAATACAGATTTAAA TTGCGCGGGAGTTA GCAAGCG TAACTCCCGCGTAA AGGTATAGCTAGTCA dnaA 9651 - 11033 + | chromosomal replication initiation protein Shewana3_0010 11054 - 12154 + | DNA polymerase III, beta subunit TERM 13 12179 - 12200 + F 100 -14.5 -3.09452 | overlap 12181 GCCTACTTTGTGCCA TACGCCGCT TTTT AGCGGCGTA TATGTCTTCAAGCCT TERM 14 12181 - 12198 + F 93 -12.7 -3.10493 | overlap 12179 CTACTTTGTGCCATA CGCCGCT TTTT AGCGGCG TATATGTCTTCAAGC Shewana3_0011 12317 - 13399 + | DNA replication and repair protein RecF Shewana3_0012 13416 - 15833 + | DNA gyrase subunit B TERM 15 15897 - 15879 - T 100 -13.2 -5.28176 | opp_overlap 15879 GTGATTGATAAAAAA GGGAAAGC TTA GCTTTCCC TTTTTGTTTGGTAGA TERM 16 15879 - 15897 + T 100 -13.2 -5.33405 | opp_overlap 15879 GTGATTGATAAAAAA GGGAAAGC TTA GCTTTCCC TTTTTGTTTGGTAGA Shewana3_0013 16572 - 15916 - | glutathione S-transferase domain-containing protein TERM 17 16283 - 16302 + g 82 -3.5 -5.28942 | GAATGCATTTCACAG GCGAAGG AGCGAG CCTTAGC TTTTTGTTTCGGGTC TERM 18 16853 - 16835 - g 76 -6 -4.59511 | overlap 16837 AAGAGTTGGGAAAAA CGCTCTTT GTA AAAGAGGG GCGAAACTTAGTCTT Shewana3_0014 16699 - 17547 + | transcriptional regulator TERM 19 18169 - 18181 + G 73 -9.1 -3.73775 | opp_overlap 18169 ATAGAGAGGTCACAA GCCTG CAG CAGGC TTTAGTGCAGCTCGG TERM 20 18267 - 18288 + G 77 -10.9 -3.63895 | overlap 18278 ATTAAACCCATTTAT TTTCGGCGC TTTG GTGCCGAAA TTTGGCGTCATTCGA Shewana3_0015 17706 - 18749 + | putative signal transduction protein TERM 21 18803 - 18754 - T 100 -15.3 -3.08073 | gap 1, opp_overlap 18771, overlap 18764 18771 AGCAGTTTTAATATA TTGCA-GCCAATAAAAAACGCGCT ATA AGCGCGTTTTTTATTGGCACTCTA ACGTGCAACTTACTG TERM 22 18792 - 18764 - T 100 -17.7 -3.07622 | opp_overlap 18771, overlap 18754 18771 ATATATTGCAGCCAA TAAAAAACGCGCT ATA AGCGCGTTTTTTA TTGGCACTCTAACGT TERM 23 18785 - 18771 - T 100 -11.4 -5.4833 | opp_overlap 18771, overlap 18764 18754 GCAGCCAATAAAAAA CGCGCT ATA AGCGCG TTTTTTATTGGCACT TERM 24 18771 - 18785 + T 100 -11.4 -5.45652 | opp_overlap 18771 18764 18754 GCAGCCAATAAAAAA CGCGCT ATA AGCGCG TTTTTTATTGGCACT glyS 20879 - 18813 - | glycyl-tRNA synthetase subunit beta glyQ 21794 - 20889 - | glycyl-tRNA synthetase subunit alpha Shewana3_0018 21913 - 22488 + | DNA-3-methyladenine glycosylase I TERM 25 22521 - 22554 + T 100 -15.5 -4.42237 | opp_overlap 22526, overlap 22526 GCTTAAATCCAAAAT AAAAAGGCATGTTCC ACGT GGAACATGCCTTTTG TTATTTTACTTTGTT TERM 26 22526 - 22549 + T 100 -15.4 -5.10656 | opp_overlap 22526, overlap 22521 AATCCAAAATAAAAA GGCATGTTCC ACGT GGAACATGCC TTTTGTTATTTTACT TERM 27 22549 - 22526 - T 100 -15.4 -5.49568 | opp_overlap 22526 22521 AATCCAAAATAAAAA GGCATGTTCC ACGT GGAACATGCC TTTTGTTATTTTACT Shewana3_0019 25762 - 22574 - | amidohydrolase TERM 28 23107 - 23133 + g 70 -8.8 -3.64822 | CGCCGTAGGCGACGA CTAAGGTTGG AGTGTAA CCGACCTTAG TTTGGCTCCAGAACT Shewana3_0020 26381 - 25944 - | MOSC domain-containing protein Shewana3_0021 26662 - 26417 - | SirA family protein Shewana3_0022 28026 - 26815 - | diguanylate cyclase TERM 29 28227 - 28210 - R 100 -8.4 -5.64421 | opp_overlap 28210 ATCGCAAATAAAAAA GCCGGA ACTGAG TCCGGC TTTGAAGGAAGAATC TERM 30 28210 - 28227 + r 71 -8.4 -3.53224 | opp_overlap 28210 ATCGCAAATAAAAAA GCCGGA ACTGAG TCCGGC TTTGAAGGAAGAATC fadA 29414 - 28251 - | 3-ketoacyl-CoA thiolase fadB 31587 - 29437 - | multifunctional fatty acid oxidation complex subunit alpha TERM 31 29717 - 29727 + g 73 -5.4 -4.72272 | overlap 29712 GCGATGATTTCATCC GCAT CGA ATGC TTTTTGCTCACCAAA TERM 32 30787 - 30807 + g 91 -14.7 -3.61517 | overlap 30784 AATTTGCAGTGCGTC GCTGCGGCC TTT GGTCGCAGC TTGTTCAACAACGCT TERM 33 30950 - 30964 + g 73 -5.7 -4.4891 | TTACGTTGGCGACGG GCTTG CCAAT CAAGC TTTTCTGCTACTGCA Shewana3_0025 32031 - 33350 + | proline dipeptidase TERM 34 33406 - 33446 + G 86 -12.3 -3.90291 | gap 1, opp_overlap 33414, overlap 33414 GTGAAAGTGTGCAGA TAGAAGAAGAGATAAAGC ATAGCC GCTTTATCTCTT-TTCTA TTTCATTGCACGAGT TERM 35 33414 - 33439 + G 100 -10.6 -4.84539 | opp_overlap 33414, overlap 33406 GTGCAGATAGAAGAA GAGATAAAGC ATAGCC GCTTTATCTC TTTTCTATTTCATTG TERM 36 33439 - 33414 - g 84 -11.3 -3.92996 | opp_overlap 33406 33414 GTGCAGATAGAAGAA GAGATAAAGCA TAGC CGCTTTATCTC TTTTCTATTTCATTG Shewana3_0026 33366 - 33980 + | hypothetical protein Shewana3_0027 34058 - 35515 + | TrkH family potassium uptake protein TERM 37 35600 - 35584 - g 90 -8.7 -4.67038 | GCCGCAAAATCAAAA CGCTTGC CGA ACAAGCG GGTGAGCAGGTGTCT Shewana3_0028 35517 - 36041 + | protoporphyrinogen oxidase TERM 38 36078 - 36045 - T 86 -6.8 -4.92314 | opp_overlap 36048 36052, overlap 36046 36048 36052 AGCAAGCTATAAAAA TGATAAAGCCCTAG TCTCTG CTAGGGCTTTATTG TTACCGCCTGACACG TERM 39 36077 - 36046 - T 80 -10.3 -3.54304 | opp_overlap 36048 36052, overlap 36045 36048 36052 GCAAGCTATAAAAAT GATAAAGCCCTAG TCTCTG CTAGGGCTTTATT GTTACCGCCTGACAC TERM 40 36075 - 36048 - T 100 -12.9 -3.33589 | opp_overlap 36048 36052, overlap 36046 36045 36052 AAGCTATAAAAATGA TAAAGCCCTAG TCTCTG CTAGGGCTTTA TTGTTACCGCCTGAC TERM 41 36048 - 36075 + T 100 -13.6 -3.62597 | opp_overlap 36048 36046 36045 36052, overlap 36052 AAGCTATAAAAATGA TAAAGCCCTAGT CTCT GCTAGGGCTTTA TTGTTACCGCCTGAC TERM 42 36052 - 36071 + T 100 -10 -4.44667 | opp_overlap 36052 36048 36046 36045, overlap 36048 TATAAAAATGATAAA GCCCTAGT CTCT GCTAGGGC TTTATTGTTACCGCC TERM 43 36071 - 36052 - T 88 -9.3 -4.2928 | opp_overlap 36048 36052, overlap 36048 36046 36045 TATAAAAATGATAAA GCCCTAG TCTCTG CTAGGGC TTTATTGTTACCGCC Shewana3_0029 36404 - 36096 - | ArsR family transcriptional regulator Shewana3_0030 36603 - 37157 + | protoporphyrinogen oxidase TERM 44 37157 - 37187 + T 100 -14.2 -5.04601 | opp_overlap 37164, overlap 37158 37164 TACTGAACCCGCCTA ATAAAAATGCGCTC ACT GAGCGCATTTTTAG TTTTTGATTTATACG TERM 45 37158 - 37186 + T 100 -17.7 -3.61676 | opp_overlap 37164, overlap 37157 37164 ACTGAACCCGCCTAA TAAAAATGCGCTC ACT GAGCGCATTTTTA GTTTTTGATTTATAC TERM 46 37164 - 37180 + T 100 -12.3 -5.1971 | opp_overlap 37164, overlap 37158 37157 CCCGCCTAATAAAAA TGCGCTC ACT GAGCGCA TTTTTAGTTTTTGAT TERM 47 37180 - 37164 - T 100 -12.3 -5.06414 | opp_overlap 37164 37158 37157 CCCGCCTAATAAAAA TGCGCTC ACT GAGCGCA TTTTTAGTTTTTGAT Shewana3_0031 38646 - 37204 - | TrkH family potassium uptake protein TERM 48 37669 - 37657 - G 86 -5.5 -5.31855 | opp_overlap 37668, overlap 37658 CATTAAGAATAAAAA CGCGA TAT TCGCA AACGCGCCCCAGGCG TERM 49 38577 - 38531 - G 72 -8 -3.81951 | gap 2 GCCGACAGCATGAAA GCGCCCACGGTTTCCTCACCGT TGAAC ACGGCAAGG-AGCAG-GGGCGC TAACATAAAGGCTGT trkA 40067 - 38658 - | potassium transporter peripheral membrane component TERM 50 38687 - 38709 + g 80 -4.8 -5.06414 | opp_overlap 38687 CGCTAGGTTGGAACA GTTTCTCGAC TTC GCCGACAAAC TTTTTGTTCACGAGG TERM 51 39693 - 39709 + g 71 -7.9 -4.11472 | opp_overlap 39688 39692 39691 39689 GATCACAAAACCACC GCGAGGG CGC CCCTCAC TATTTTTGGTTTCAC Shewana3_0033 41372 - 40083 - | sun protein TERM 52 41240 - 41255 + g 74 -6.8 -4.33258 | opp_overlap 41240 TCACGCCGTAGCAGA GCTCTG CGAG CAGGGC TTTATCTTTACCACT Shewana3_0034 42328 - 41372 - | methionyl-tRNA formyltransferase TERM 53 41440 - 41452 + g 76 -4.8 -5.02074 | overlap 41436 CATTGAGTATGTCGG CCAC GCTGA GTGG TTTTTTACCGGGTAA TERM 54 42351 - 42367 + r 71 -5 -4.72486 | CCTAATGCTTATTTG GCGTCC TGTCT GGCCGC TTTTTCAAGTTTCTG Shewana3_0035 42850 - 42344 - | peptide deformylase TERM 55 43105 - 43095 - g 76 -4.6 -5.02476 | opp_overlap 43102, overlap 43097 ATATGTGGTAAAAAA GGGC GAT ACCC TGTGGGATATCTCGG TERM 56 43302 - 43292 - g 76 -8.2 -4.13014 | CCCATATTCGCAAAA CCCC TGA GGGG CGCGTGATTGCTAAG TERM 57 43673 - 43622 - g 70 -4.6 -4.74103 | TGTCTAAGGTAAAAA TCC-TCAGCAACTACCGTGAAACC AAGGCG GGTTTTAGGGC-GTTGCCGATGGA AGATGAAGCCTTAAT Shewana3_0036 42976 - 44100 + | peptidoglycan-binding LysM TERM 58 44867 - 44896 + G 79 -9.3 -4.16016 | overlap 44870 TGTTCCGGGCTCGAT TCTTGGCGGCTTT CATC AAGGCTGCCATGA TTTATTGCGGGATGG Shewana3_0037 44184 - 45200 + | DNA protecting protein DprA Shewana3_0038 45203 - 45679 + | hypothetical protein TERM 59 45708 - 45722 + F 90 -7.1 -5.15634 | opp_overlap 45708 ATGAATAATGAGAAA GGAGG CTAGC CCTCC TTTTTTGATGCCATA TERM 60 45722 - 45708 - f 73 -7.1 -4.14859 | opp_overlap 45708 ATGAATAATGAGAAA GGAGG CTAGC CCTCC TTTTTTGATGCCATA Shewana3_0039 45802 - 46365 + | DNA topoisomerase type IA Zn finger domain-containing protein TERM 61 46830 - 46859 + G 86 -12.1 -3.86194 | gap 1 TGATTCTATCGCCGT GCGCGT-CTCCGCC CAT GACGGAGTGCGCGC TTTATGCCAAGCCTT Shewana3_0040 46495 - 47061 + | translation factor SUA5 Shewana3_0041 47091 - 47999 + | coproporphyrinogen III oxidase TERM 62 48016 - 48043 + T 77 -10.8 -2.78384 | gap 1, opp_overlap 48016 48015, overlap 48016 CACGCTAATATGAAT TGCGTAATC-GTA CTT TACTGATTACGCA TATGATCGGCCAGAG TERM 63 48043 - 48016 - T 76 -10.8 -2.62026 | gap 1, opp_overlap 48016 48016, overlap 48015 CACGCTAATATGAAT TGCGTAATC-GTA CTT TACTGATTACGCA TATGATCGGCCAGAG Shewana3_0042 48467 - 48030 - | globin TERM 64 48358 - 48346 - G 74 -4.9 -4.83169 | ATTTTCTGATAAAAA CTATT GGC AATAG CACGGATCACTTTGT Shewana3_0043 48638 - 49516 + | shikimate 5-dehydrogenase Shewana3_0044 49537 - 49812 + | hypothetical protein TERM 65 49874 - 49843 - T 88 -10.9 -3.79995 | opp_overlap 49843 49844, overlap 49844 CTAAGCACAACACAA GCGAGATGGCAGC TTAAAT ACTGCCATCTCGA TTTAATAGAAACATT TERM 66 49843 - 49874 + T 82 -10.2 -3.73072 | opp_overlap 49843 49844, overlap 49844 CTAAGCACAACACAA GCGAGATGGCAG CTTAAATA CTGCCATCTCGA TTTAATAGAAACATT TERM 67 49844 - 49873 + T 93 -13.7 -2.83522 | opp_overlap 49844 49843, overlap 49843 TAAGCACAACACAAG CGAGATGGCAG CTTAAATA CTGCCATCTCG ATTTAATAGAAACAT TERM 68 49873 - 49844 - T 100 -14.4 -2.87274 | opp_overlap 49843 49844, overlap 49843 TAAGCACAACACAAG CGAGATGGCAGC TTAAAT ACTGCCATCTCG ATTTAATAGAAACAT Shewana3_0045 50436 - 49888 - | carbonic anhydrase TERM 69 50689 - 50658 - H 73 -8.8 -3.53444 | overlap 50668 GCACTTGGTTCGAAA GCATCAAGAAGTTT GCAA AAACGCCTTGACGC GACTGGGGAAATGCG TERM 70 50715 - 50701 - H 71 -8.6 -3.55563 | ACGCGACTGGGGAAA TGCGTA GAA TACGCA GCCCTGACCCGCTGA TERM 71 50843 - 50821 - H 70 -7.1 -3.76952 | gap 1 TTGAGTTAATCGAAA TTACTCTGCC ATTT GGC-GAGTAA TCAAAATTTACATCA TERM 72 52709 - 52669 - H 76 -2.7 -5.27779 | opp_overlap 52676 52681 52683 52688, overlap 52683 GTTAATACGAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 73 53289 - 53277 - H 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 74 54087 - 54071 - H 85 -9.4 -4.08546 | overlap 54084 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 75 54541 - 54569 + H 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 76 56056 - 56089 + H 100 -13.3 -2.93572 | opp_overlap 56056 56063, overlap 56063 CTCCGCCAACACAAA GAGATAAGCCTCATC GAAA GATGAGGCTTTTTTC GTTTATACGCTGGAT TERM 77 56089 - 56056 - H 93 -11.1 -4.1891 | opp_overlap 56056 56063, overlap 56063 CTCCGCCAACACAAA GAGATAAGCCTCATC GAAA GATGAGGCTTTTTTC GTTTATACGCTGGAT TERM 78 56082 - 56063 - H 100 -12.2 -3.82789 | opp_overlap 56056 56063, overlap 56056 AACACAAAGAGATAA GCCTCATC GAAA GATGAGGC TTTTTTCGTTTATAC TERM 79 56063 - 56082 + H 100 -12.2 -5.42514 | opp_overlap 56063 56056, overlap 56056 AACACAAAGAGATAA GCCTCATC GAAA GATGAGGC TTTTTTCGTTTATAC Shewana3_0046 56354 - 56608 + | hypothetical protein TERM 80 56714 - 56703 - g 70 -2.2 -4.9725 | AGCCCGATAGAAAAA CCCT TTTT AGGA TCGCAGAGATTACAG Shewana3_0047 56630 - 57085 + | BadM/Rrf2 family transcriptional regulator Shewana3_0048 57815 - 57060 - | protein of unknown function DUF610, YibQ Shewana3_0049 59033 - 57828 - | C-terminal processing peptidase-3 TERM 81 58106 - 58116 + g 71 -6.8 -4.25104 | TTTCACCAAGCAGTT TGGC GCG GCCA TTTTCCTGCAGGGCG Shewana3_0050 60215 - 59082 - | peptidase M23B TERM 82 60195 - 60170 - G 86 -14.9 -2.88737 | opp_overlap 60174, overlap 60174 AGAAAGATAACATCA TAAAGCCAGCA ATAA TGCTGGCTTTA ACGGGGAGTCGAGTG TERM 83 60174 - 60191 + g 79 -11.3 -3.53444 | opp_overlap 60170 60174 AGATAACATCATAAA GCCAGCA ATAA TGCTGGC TTTAACGGGGAGTCG TERM 84 60191 - 60174 - G 86 -11.3 -4.09173 | opp_overlap 60174, overlap 60170 AGATAACATCATAAA GCCAGCA ATAA TGCTGGC TTTAACGGGGAGTCG Shewana3_0051 61770 - 60226 - | phosphoglyceromutase Shewana3_0052 61994 - 62470 + | rhodanese domain-containing protein TERM 85 62702 - 62682 - f 85 -4 -5.51046 | opp_overlap 62696 TAAATAGACAAAAAA GCCAAC CAGATAAGT GTTGGC ATAACATTGATAGGA TERM 86 63005 - 63030 + G 71 -10.5 -3.08464 | TCTCAATCGCAGGTC TGACTGAGCCA CAAC TGGCTCACTCA TTAGGTGCATACTGC Shewana3_0053 62731 - 63216 + | preprotein translocase subunit SecB gpsA 63221 - 64237 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 87 64271 - 64289 + F 100 -11 -5.37043 | opp_overlap 64271 GCTGAATAAAATAAA GGGTGCTA AAA TAGCGCCC TTTTTTATGTCCGAT TERM 88 64289 - 64271 - f 100 -8.8 -4.87892 | opp_overlap 64271 GCTGAATAAAATAAA GGGTGCTA AAA TAGCGCCC TTTTTTATGTCCGAT TERM 89 65093 - 65083 - g 73 -5.4 -4.69326 | ACAGCGAAGATAAAA TTCG CTT CGAA CCGCTGTCGGGCATT TERM 90 65514 - 65472 - g 74 -11.3 -3.08173 | gap 1 ATGAATGGCACCGAA GGCTATC-GCACCGCCGAAG TGAC CCTCGGCGGCGTAGATACCC ATGAACTCTCCTCCA Shewana3_0055 64476 - 65660 + | hypothetical protein Shewana3_0056 66383 - 67246 + | hypothetical protein TERM 91 67282 - 67306 + T 78 -5.7 -4.77757 | CAAAAGCTCTCATCA TCGGTAGCTCA AAT TAAGTTGCCGA TTTTCATTTTTGGGA TERM 92 67479 - 67461 - T 88 -12.4 -2.65264 | TGATTAGCGAGACGA CCGTCCGC ACC ACGGACGG GGCGGTCGAGCATCC Shewana3_0057 69185 - 67824 - | TrkH family potassium uptake protein TERM 93 68693 - 68678 - G 75 -10.4 -3.48506 | opp_overlap 68667, overlap 68676 68664 AGAAGCCATGAAACA GGCTGG TTTG CCAGCC CAGCTCGCCGCTCCA Shewana3_0058 69885 - 69187 - | TrkA domain-containing protein Shewana3_0059 70619 - 69930 - | two component transcriptional regulator TERM 94 70332 - 70354 + g 87 -4.7 -5.52023 | overlap 70333 70334 ACTCAGGTAATCGTT AGCGCCTGC CTCGA GCAGGCGGA TTTTTTCTTCCTCCT TERM 95 70333 - 70353 + g 72 -8.2 -3.89587 | overlap 70332 70334 CTCAGGTAATCGTTA GCGCCTGC CTCGA GCAGGCGG ATTTTTTCTTCCTCC TERM 96 70334 - 70352 + g 76 -11.7 -2.92668 | overlap 70333 70332 TCAGGTAATCGTTAG CGCCTGC CTCGA GCAGGCG GATTTTTTCTTCCTC Shewana3_0060 71666 - 70620 - | ATPase domain-containing protein Shewana3_0061 72821 - 71895 - | pirin domain-containing protein Shewana3_0062 72956 - 73693 + | hypothetical protein Shewana3_0063 73793 - 74272 + | NLP/P60 protein Shewana3_0064 74297 - 75745 + | major facilitator transporter Shewana3_0065 75834 - 76862 + | LacI family transcription regulator TERM 97 76881 - 76907 + T 100 -15.3 -5.21236 | opp_overlap 76886, overlap 76886 AATCAGTTTTATATG CAAAAGGCGCT AATTA AGCGCCTTTTG TTTTTGTTCTGCATT TERM 98 76886 - 76902 + T 100 -9.4 -5.44638 | opp_overlap 76886, overlap 76881 GTTTTATATGCAAAA GGCGCT AATTA AGCGCC TTTTGTTTTTGTTCT TERM 99 76902 - 76886 - T 85 -9.4 -4.2349 | opp_overlap 76886 76881 GTTTTATATGCAAAA GGCGCT AATTA AGCGCC TTTTGTTTTTGTTCT Shewana3_0066 78405 - 76921 - | alpha amylase, catalytic region TERM 100 79686 - 79699 + G 70 -2.3 -5.01732 | AGCACGGCTCTGTGG CTGGA GTTA TCCTG TTTTTTACCGCGGTT Shewana3_0067 78662 - 79882 + | major facilitator transporter TERM 101 79890 - 79916 + F 100 -15.4 -5.17576 | opp_overlap 79890 CCGCTTGAATTGAAA TGTGACAGAAAA ATT TTTTCTGTCACA TTTTTTCGATTAATC TERM 102 79916 - 79890 - f 100 -15.4 -3.75153 | opp_overlap 79890 CCGCTTGAATTGAAA TGTGACAGAAAA ATT TTTTCTGTCACA TTTTTTCGATTAATC Shewana3_0068 80143 - 82539 + | TonB-dependent receptor TERM 103 82579 - 82595 + F 91 -8 -4.86621 | opp_overlap 82578 82579 CCAACAATTTAAAAG GCCCAT CAAGC ATGGGC TTTTTGCTTAACCAT TERM 104 82731 - 82711 - g 70 -11.1 -2.56715 | opp_overlap 82699 AGTCCCATCAAGCCA TTGCGGGCG GCG CGCCTGCAA ACGTGGCTGTGGGTT TERM 105 83386 - 83370 - g 71 -7.9 -4.05788 | GTCCCCCAAATTAAA GCCGTTG ATA CCACGGC GGCGGGCGACAGCTT Shewana3_0069 82632 - 83591 + | ribokinase-like domain-containing protein TERM 106 83612 - 83639 + F 89 -7 -5.41143 | CCTGCAAACCATCAA GCTGAGGTGAGT GATT GCTTGCCTTAGC TTTTTTTCGAGCCTA mogA 83797 - 84330 + | molybdenum cofactor biosynthesis protein TERM 107 84373 - 84357 - T 100 -12.3 -4.11404 | opp_overlap 84357 GCTATATGACATAAA CCCAAGC CTA GCTTGGG TTTTTTATTGGCTTG TERM 108 84357 - 84373 + T 100 -12.3 -5.5074 | opp_overlap 84357 GCTATATGACATAAA CCCAAGC CTA GCTTGGG TTTTTTATTGGCTTG Shewana3_0071 84582 - 84364 - | hypothetical protein Shewana3_0072 84734 - 85777 + | transcriptional regulator Shewana3_0073 86041 - 85781 - | hypothetical protein TERM 109 85934 - 85953 + g 79 -7.1 -4.68994 | overlap 85938 AAGCTGTCGATCATT TCCGCCG CCCAGT TGGCGGA TTTTTAGATAATGCT TERM 110 86094 - 86044 - R 74 -9.6 -3.28791 | opp_overlap 86049 86051 86053, overlap 86048 86062 ATTCGTTTTCCATAA CTGACCCCTTTAACCCAAGGGCGC GGT GCGCCCTTGGGTCGATAGTGTTAT AAGCCGAAGACCACT TERM 111 86090 - 86048 - R 100 -14.8 -2.59431 | opp_overlap 86049 86051 86053, overlap 86044 86062 GTTTTCCATAACTGA CCCCTTTAACCCAAGGGCGC GGT GCGCCCTTGGGTCGATAGTG TTATAAGCCGAAGAC TERM 112 86049 - 86090 + r 100 -14.5 -3.28712 | gap 1, opp_overlap 86048 86044 86062, overlap 86051 86053 TTTTCCATAACTGAC CCCT-TTAACCCAAGGGCGC GGT GCGCCCTTGGGTCGATAGTG TTATAAGCCGAAGAC TERM 113 86051 - 86088 + r 100 -15.7 -3.21276 | gap 1, opp_overlap 86048 86044 86062, overlap 86049 86053 TTCCATAACTGACCC CT-TTAACCCAAGGGCGC GGT GCGCCCTTGGGTCGATAG TGTTATAAGCCGAAG TERM 114 86053 - 86085 + r 100 -18.5 -2.80074 | opp_overlap 86048 86044 86062, overlap 86051 86049 CCATAACTGACCCCT TTAACCCAAGGGCGC GGT GCGCCCTTGGGTCGA TAGTGTTATAAGCCG TERM 115 86076 - 86062 - R 95 -12.8 -3.17194 | opp_overlap 86053 86051 86049, overlap 86048 86044 ACCCCTTTAACCCAA GGGCGC GGT GCGCCC TTGGGTCGATAGTGT Shewana3_0074 87230 - 86091 - | transport protein, putative Shewana3_0075 88053 - 87319 - | ABC transporter related Shewana3_0076 89676 - 88057 - | TAP domain-containing protein TERM 116 88298 - 88326 + g 70 -9.5 -3.29511 | overlap 88287 88299 GGTGCGACAAAGTGT TTGGCGTTGGTGA GTT TCTCCATCGCCAG TTCTCCCCAGCTCGG Shewana3_0077 89769 - 90134 + | GntR family transcriptional regulator TERM 117 90259 - 90229 - g 71 -5.5 -4.50159 | gap 1 TCTAACGTAAACAAA GTGTTTCG-TGGCA AAGG CGCCAGCGAAAAAC GTGCGCTCAAGGATC TERM 118 90505 - 90515 + G 70 -3.2 -4.83615 | GAACGTGCCCTCGAT TTGC ACC GCAG TTTTTATCCCCACTG TERM 119 90747 - 90757 + G 70 -8.2 -3.72481 | overlap 90746 CTTAGCCCTCGAATC CGGC TCG GCCG TGTTGTTTTCATCCC TERM 120 90809 - 90830 + G 70 -11.6 -2.5789 | overlap 90808 GGGTCGCGAGCCATG TCGCCCTG ATTAAA CAGGGCGA GTTAGTGCTGTTTAA Shewana3_0078 90181 - 91044 + | ABC transporter related Shewana3_0079 91041 - 92351 + | hypothetical protein Shewana3_0080 92480 - 94273 + | AMP-dependent synthetase and ligase TERM 121 94311 - 94297 - f 100 -12.8 -4.13767 | opp_overlap 94297 TCTTTGATCTTAAAA GGCCGC TTA GCGGCC TTTTTTGTGTCAGCC TERM 122 94297 - 94311 + F 100 -12.8 -5.36441 | opp_overlap 94297 TCTTTGATCTTAAAA GGCCGC TTA GCGGCC TTTTTTGTGTCAGCC Shewana3_0081 94414 - 96903 + | MORN repeat-containing protein Shewana3_0082 97011 - 97421 + | thioesterase superfamily protein Shewana3_0083 97540 - 98088 + | HPP family protein Shewana3_0084 98372 - 98109 - | hypothetical protein TERM 123 98180 - 98210 + g 79 -11.1 -3.55761 | CTTTGGCCCACTTTA GGCCATGGCGAAC TAAAC GTTCGGCAAGGCC TTTGCCGCGTAGCTC Shewana3_0085 98896 - 98432 - | thioesterase superfamily protein TERM 124 99286 - 99296 + G 76 -3.2 -5.12068 | overlap 99270 99269 CGGCACAGCTTGAGT CTGT GCA GCAG TTTTTATTGAATATC Shewana3_0086 99057 - 99410 + | MerR family transcriptional regulator TERM 125 99415 - 99451 + F 83 -11 -3.52787 | gap 1, overlap 99417 CCCGCGCCTAATTCC AAGCTTGA-CTCTGCCC CTAG GGGCAGAGCTTAAGCTG TTGTCATATTGAATA TERM 126 99417 - 99449 + F 100 -13.6 -3.33348 | gap 1, overlap 99415 CGCGCCTAATTCCAA GCTTGA-CTCTGCCC CTAG GGGCAGAGCTTAAGC TGTTGTCATATTGAA Shewana3_0087 99482 - 100060 + | NAD(P)H dehydrogenase (quinone) Shewana3_0088 100076 - 100471 + | glutathione-dependent formaldehyde-activating, GFA TERM 127 100518 - 100491 - T 100 -17.2 -3.86015 | opp_overlap 100497, overlap 100497 GATTTGCCCGATAAA CAAAAAGCGACC CTTG GGTCGCTTTTTG TGTGCAGTGCCGATG TERM 128 100497 - 100512 + T 100 -10.4 -4.9792 | opp_overlap 100497 100491 CCCGATAAACAAAAA GCGACC CTTG GGTCGC TTTTTGTGTGCAGTG TERM 129 100512 - 100497 - T 100 -10.4 -5.38054 | opp_overlap 100497, overlap 100491 CCCGATAAACAAAAA GCGACC CTTG GGTCGC TTTTTGTGTGCAGTG Shewana3_0089 101214 - 100534 - | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase TERM 130 101894 - 101906 + G 73 -2.7 -4.91712 | CGGATGGGGTTTCCT TTAGT CTT ACTGA TTTTTATGGCTTAGC Shewana3_0090 101578 - 102012 + | hypothetical protein Shewana3_0091 102105 - 103118 + | hypothetical protein TERM 131 103136 - 103156 + T 72 -9.7 -2.87463 | ACAGTCGCCTCAATT GCAGCCACA GAA TGTAGCTGC TCTATGCGACAGCTT TERM 132 103364 - 103384 + T 100 -12.6 -4.73682 | GGTTGACAGTTTTTA GGCCAGCT CCAGT AGCTGGCC TTTTCTATTGTGCGC Shewana3_0092 104164 - 103361 - | integrase catalytic subunit TERM 133 103595 - 103575 - G 79 -11.1 -3.54029 | opp_overlap 103574 103575 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 134 103575 - 103595 + g 71 -11.1 -2.79327 | opp_overlap 103575, overlap 103574 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 135 103870 - 103920 + g 70 -2.6 -5.01546 | gap 1, opp_overlap 103887 CATCATGCAGTCCTT CCTCTTTCAGCAGAT-TAGGATG CTTCTT CATCCAGTGTTTGCTGAACGTGG TTTTTGTGTAGCTTT TERM 136 104181 - 104208 + r 71 -4 -4.8622 | opp_overlap 104166, overlap 104166 CCCGCAGCACGACAT GCGGCAGCGAGG GTTA TTTCGCCGTTGC TTTTTGCTTGCCAGA Shewana3_0093 104589 - 104194 - | transposase Shewana3_0094 104633 - 105280 + | hypothetical protein TERM 137 105341 - 105314 - T 86 -7.6 -4.60041 | opp_overlap 105318, overlap 105316 105318 AGGGAGCCGTAAAAA GACAGGGGCCGC CTAA GCTGCCCCTATA TTGAGATGATTTGAG TERM 138 105339 - 105316 - T 89 -10.2 -3.91506 | opp_overlap 105318, overlap 105314 105318 GGAGCCGTAAAAAGA CAGGGGCCGC CTAA GCTGCCCCTA TATTGAGATGATTTG TERM 139 105318 - 105337 + T 77 -10.6 -3.09557 | opp_overlap 105316 105314 105318 AGCCGTAAAAAGACA GGGGCCGC CTAA GCTGCCCC TATATTGAGATGATT TERM 140 105337 - 105318 - T 80 -10.6 -3.54256 | opp_overlap 105318, overlap 105316 105314 AGCCGTAAAAAGACA GGGGCCGC CTAA GCTGCCCC TATATTGAGATGATT Shewana3_0095 107278 - 105371 - | hypothetical protein TERM 141 107506 - 107540 + H 71 -9.4 -3.00907 | opp_overlap 107506, overlap 107488 107502 GACATAGTCAATCAA TCTCGATATTGTTGAT AAT GTCAACTATCTCGAGA TGTCATTATGTCTGC TERM 142 107540 - 107506 - H 71 -8.7 -3.39856 | opp_overlap 107488 107506 107502 GACATAGTCAATCAA TCTCGATATTGTTGA TAATG TCAACTATCTCGAGA TGTCATTATGTCTGC Shewana3_0096 107548 - 107976 + | MarR family transcriptional regulator Shewana3_0097 108012 - 108758 + | FAD-binding 9, siderophore-interacting domain-containing protein TERM 143 109091 - 109101 + T 75 -2.4 -5.40072 | opp_overlap 109082, overlap 109083 TACAACCCCAGTTCA CTGG TAT CCTG TTTTTTTCCAAAAGC TERM 144 109407 - 109440 + T 88 -9.8 -4.07868 | opp_overlap 109406 109410, overlap 109410 GATGGCTAAGCACAT CAATAGGTTATAAG CTGTCT CTAATAACCTATTG TTTATGTCAGTATAA Shewana3_0098 110688 - 109462 - | imidazolonepropionase Shewana3_0099 110886 - 111593 + | histidine utilization repressor TERM 145 113021 - 113006 - g 70 -4.6 -4.61231 | opp_overlap 113018 CGAGATGGTGAAAAA CGGCGA GCTG TCGGCG CCGATCGTCATTGGT Shewana3_0100 111717 - 113387 + | urocanate hydratase Shewana3_0101 113437 - 114978 + | histidine ammonia-lyase TERM 146 115045 - 115075 + F 86 -12 -3.14745 | opp_overlap 115044 115050, overlap 115050 AAGCGATCAATAAAG TGAAAGGCATAGCG ATT TGCTATGCCTTTTG TCTATCTTATGCGGC TERM 147 115070 - 115050 - f 90 -11.2 -3.93864 | opp_overlap 115045 115050, overlap 115044 ATCAATAAAGTGAAA GGCATAGC GATTT GCTATGCC TTTTGTCTATCTTAT TERM 148 115050 - 115070 + F 100 -11.9 -4.69028 | opp_overlap 115050 115044, overlap 115045 ATCAATAAAGTGAAA GGCATAGCG ATT TGCTATGCC TTTTGTCTATCTTAT TERM 149 115087 - 115100 + F 75 -5.9 -4.72486 | overlap 115086 TTTGTCTATCTTATG CGGCG ATTT CGCTG TTTTTGCACTTTGTA TERM 150 116037 - 116027 - f 100 -8.2 -4.87665 | CCTGATTGAGAAAAA CGCC GAT GGCG TAACGGTTAACCGTT TERM 151 118843 - 118794 - g 73 -11.8 -2.52464 | overlap 118804 118805 GTTCGTTCCAAGGGA CTT-ATCAAAACCCAGCATCTCTG TCGC CAGAG-TGCTGGACCTTGATGAAG TACAACGAGATCGAA TERM 152 118832 - 118804 - g 89 -10.4 -4.28548 | gap 1, overlap 118794 118805 AGGGACTTATCAAAA CCCAGCATCTCTG TCGC CAGAG-TGCTGGA CCTTGATGAAGTACA TERM 153 118831 - 118805 - g 77 -11.7 -3.16647 | gap 1, overlap 118804 118794 GGGACTTATCAAAAC CCAGCATCTCTG TCGC CAGAG-TGCTGG ACCTTGATGAAGTAC Shewana3_0103 118604 - 119518 + | formate dehydrogenase beta subunit Shewana3_0104 119515 - 120156 + | formate dehydrogenase gamma subunit TERM 154 120253 - 120241 - g 74 -7.7 -4.13767 | opp_overlap 120251 CGGTGGACCCTAAAA CTGTG TAT CACAG ACGGGCGCAGCGTTT Shewana3_0105 120156 - 121064 + | formate dehydrogenase accessory protein FdhE TERM 155 121072 - 121098 + F 100 -13 -3.89695 | opp_overlap 121070 121071, overlap 121073 AGCAATAACCAAAGT CGGGAAGGGCTC ACC GAGTCCTTCCCC TTATATTTATCAAGA TERM 156 121073 - 121097 + F 100 -16.5 -2.93335 | opp_overlap 121070 121071, overlap 121072 GCAATAACCAAAGTC GGGAAGGGCTC ACC GAGTCCTTCCC CTTATATTTATCAAG TERM 157 122039 - 122050 + G 71 -7.2 -3.9941 | TAAACTCCTTGGCGG CCCG CAAT CGGG TTTGATTGTCGGCAA TERM 158 122325 - 122348 + G 76 -6 -4.62783 | gap 1, overlap 122323 TGCCAAACCCAAGTC GGTAGC-GGCT CGC AGCCCGATACC TTTTTGCCCTCAATC Shewana3_0106 121113 - 122543 + | selenocysteine synthase TERM 159 122907 - 122878 - g 81 -13.7 -3.14931 | gap 1 CTTAGTGCTGACCAA GCGG-GATTTGGTC GAT GACCAAACCGCCGC CAAGTTGACCCTAGA Shewana3_0107 122540 - 124561 + | selenocysteine-specific translation elongation factor SelB Shewana3_0108 124669 - 125505 + | formate dehydrogenase family accessory protein FdhD TERM 160 125583 - 125597 + F 81 -4.3 -5.34555 | GTGTGGCAACGGGTA TAAGC CTCGT GCTTA TTTTTTATAGTCTCG Shewana3_0109 125630 - 126844 + | putative inner membrane protein Shewana3_0110 126844 - 127077 + | hypothetical protein TERM 161 127139 - 127110 - T 100 -13.7 -4.23674 | opp_overlap 127116, overlap 127116 GGCTATTAAGACAAA TAAAAAGCGCTGC ATTG GCAGCGCTTTTTG ATCTTAGCCTTGGCA TERM 162 127133 - 127116 - T 100 -12.7 -5.4659 | opp_overlap 127116, overlap 127110 TAAGACAAATAAAAA GCGCTGC ATTG GCAGCGC TTTTTGATCTTAGCC TERM 163 127116 - 127133 + T 100 -12.7 -4.87626 | opp_overlap 127110 127116 TAAGACAAATAAAAA GCGCTGC ATTG GCAGCGC TTTTTGATCTTAGCC Shewana3_0111 128486 - 127143 - | peptidase M48, Ste24p TERM 164 127533 - 127547 + g 71 -7 -4.27467 | opp_overlap 127532 ATCATCATAGTTAAT GCTGGC AGC GCCCGC TTTCTCTTGGTATTC Shewana3_0112 129218 - 128604 - | hypothetical protein Shewana3_0113 129604 - 130224 + | hypothetical protein Shewana3_0114 131216 - 130227 - | hypothetical protein Shewana3_0115 131982 - 131341 - | hypothetical protein TERM 165 132515 - 132501 - g 88 -3.5 -5.61689 | overlap 132502 AAAATCAATAAAAAA CGCCA AAAGG TGGCA GAGGCTCAAGCTGAA Shewana3_0116 132180 - 132563 + | hypothetical protein Shewana3_0117 132797 - 134065 + | MscS mechanosensitive ion channel Shewana3_0118 134690 - 134067 - | lysine exporter protein LysE/YggA Shewana3_0119 135276 - 134716 - | phospholipid/glycerol acyltransferase Shewana3_0120 135406 - 135855 + | hypothetical protein Shewana3_0121 136660 - 135860 - | hypothetical protein TERM 166 136167 - 136203 + g 71 -7.3 -4.08394 | gap 1, opp_overlap 136174 AGCGGTTCCGATTGT TGGATAAGGGCC-TCG AGCGAG CGTTGGCCCTTAGCCA TTTTCGGCCAGATAT TERM 167 136702 - 136663 - R 100 -16 -3.53164 | opp_overlap 136663 136665 136676, overlap 136672 AGAGTATGCACATAA CAGGCTAAATTTATCCTA GGAG TAGGATTAACTTAGCCTG TCTGTGATCAAATGA TERM 168 136663 - 136702 + r 100 -13.8 -2.94747 | opp_overlap 136663 136672, overlap 136665 136676 AGAGTATGCACATAA CAGGCTAAATTTATCCTA GGAG TAGGATTAACTTAGCCTG TCTGTGATCAAATGA TERM 169 136665 - 136700 + r 76 -10.6 -3.02649 | opp_overlap 136663 136672, overlap 136663 136676 AGTATGCACATAACA GGCTAAATTTATCCTA GGAG TAGGATTAACTTAGCC TGTCTGTGATCAAAT Shewana3_0122 138367 - 136724 - | hypothetical protein TERM 170 138710 - 138724 + G 76 -8.6 -4.15854 | TGATCATGGATCCCC TCGGTA ATT TACCGA TTTTCGCGTCGATTT Shewana3_0123 138661 - 139254 + | multiple antibiotic resistance (MarC)-related proteins TERM 171 139277 - 139300 + F 100 -11.8 -5.64274 | opp_overlap 139276 TCTGTTTTGCAAGAG CCGCATTGAC GCCC GTTAATGCGG TTTTTTTATGCCTAA TERM 172 139851 - 139863 + G 71 -10.5 -3.03124 | GCGATGATGCGCGCC CCCGC ACA GCGGG TGTTAGCGGATGCAG TERM 173 141768 - 141793 + G 71 -7 -4.26076 | gap 1, overlap 141761 AATGCGAATGCTGAT CCAGC-GTTAA CTCCC TTAACCGCTGG TTTTAGTGCCAGTGC Shewana3_0124 139551 - 142121 + | peptidase M6, immune inhibitor A TERM 174 142142 - 142160 + T 100 -9.6 -5.49568 | opp_overlap 142142 TATGTTTACGAAAAA TGCCTCTG ATA TAGAGGCA TTTTTGTTTTAGCTT TERM 175 142160 - 142142 - T 100 -8.9 -4.72986 | opp_overlap 142142 TATGTTTACGAAAAA TGCCTCT GATAT AGAGGCA TTTTTGTTTTAGCTT Shewana3_0125 142750 - 142187 - | chorismate lyase Shewana3_0126 142852 - 143262 + | flagellar basal body-associated protein FliL-like protein Shewana3_0127 143323 - 144417 + | putative SAM-dependent methyltransferase TERM 176 144421 - 144439 + T 100 -11.7 -5.86061 | opp_overlap 144421 AGCGGGGCATAAAAA CAGGCGC CGAGT GCGCCTG TTTTTTTTACTAGCC TERM 177 144439 - 144421 - T 100 -11.7 -4.83169 | opp_overlap 144421 AGCGGGGCATAAAAA CAGGCGC CGAGT GCGCCTG TTTTTTTTACTAGCC Shewana3_0128 144755 - 144459 - | hypothetical protein Shewana3_0129 145443 - 144781 - | response regulator receiver protein TERM 178 144851 - 144872 + g 73 -5.1 -4.71482 | TACAAAGCGGCGGCA CTGTCGACA GCAT TATCGACGG TTTTTGGGATTTGAT Shewana3_0130 146259 - 145498 - | molybdopterin biosynthesis protein MoeB Shewana3_0131 147605 - 146271 - | molybdopterin molybdochelatase Shewana3_0132 147853 - 148389 + | Ferritin, Dps family protein TERM 179 148412 - 148425 + T 100 -8.1 -5.45652 | opp_overlap 148412 TGTGATGATAAAAAA GCAGC CTAG GCTGC TTTTTTGTTGGCGAT TERM 180 148425 - 148412 - T 100 -8.1 -5.31275 | opp_overlap 148412 TGTGATGATAAAAAA GCAGC CTAG GCTGC TTTTTTGTTGGCGAT Shewana3_0133 151698 - 148465 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 181 149577 - 149551 - G 74 -7.2 -4.15864 | opp_overlap 149571, overlap 149541 GAGAATAAGCACAAA TTCGTCGCCACC GAT GCGGGCGACAAA GTCGTTCTTACCGGC TERM 182 150245 - 150263 + g 76 -11 -3.25341 | overlap 150243 ATGCGGGCCAGCTCG TCGGTGCC AGA GGCATCGA TATTGATATTGAGCT TERM 183 151757 - 151741 - R 95 -7.3 -5.4251 | opp_overlap 151741 TGGAGACATAAAAAA TCAAGGC AAA ACCTTGA TGTGTTAAAAGTGAA TERM 184 152010 - 152032 + r 100 -13.4 -3.65902 | opp_overlap 152010 TTGCTAAATAAAAAA GGACGTGGGC AGA GCCGACGTCC TTTAACTAGCATCCC TERM 185 152032 - 152010 - R 100 -13.4 -5.63517 | opp_overlap 152010 TTGCTAAATAAAAAA GGACGTGGGC AGA GCCGACGTCC TTTAACTAGCATCCC Shewana3_0134 152715 - 152062 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 186 155063 - 155053 - g 70 -2.4 -4.96501 | GGCGATAAAAATAAA GTGG TGG CCTC GGGTGGCAGTGCCGG Shewana3_0135 153400 - 155535 + | oligopeptidase B Shewana3_0136 155558 - 155980 + | excinuclease ABC subunit C Shewana3_0137 156299 - 157129 + | hypothetical protein TERM 187 157506 - 157494 - T 75 -9.1 -3.6106 | CGTAACAGTGCGAAA GCCTG CGG CAGGC AATTAGGGTATACAA TERM 188 157611 - 157585 - T 100 -12.4 -4.40358 | ATCTACTGGACAAAA TTGAGTCTGAGA AAG TCTCAGACGCAA AAAAGATGCCACTAC TERM 189 157643 - 157616 - T 78 -4.2 -5.1287 | opp_overlap 157620, overlap 157618 CTCAGACGCAAAAAA GATGCCACTA CAAGGGGT TAGTGGCATA AAGTGCATAAGAATG TERM 190 157641 - 157618 - T 71 -6.8 -4.19215 | opp_overlap 157620, overlap 157616 CAGACGCAAAAAAGA TGCCACTA CAAGGGGT TAGTGGCA TAAAGTGCATAAGAA Shewana3_0138 158553 - 157777 - | putative lipoprotein TERM 191 158257 - 158269 + g 74 -4.8 -4.83615 | GTCGGCCTTAAGCTG GGCT TTGTT AGCC TTTTTCTCAAGGGTG TERM 192 159561 - 159531 - g 100 -18.5 -3.18264 | opp_overlap 159535 159539, overlap 159539 GCCGTTATGTACTAA TACACCAAGGGCA ACATG TGCCCTTGGTGTA TAGCATAAGCGCGCG TERM 193 159535 - 159557 + G 80 -13.5 -2.89564 | opp_overlap 159531 159539, overlap 159539 TTATGTACTAATACA CCAAGGGCA ACATG TGCCCTTGG TGTATAGCATAAGCG Shewana3_0139 158822 - 159589 + | methyltransferase type 12 Shewana3_0140 161594 - 159615 - | peptidase M14, carboxypeptidase A TERM 194 159713 - 159731 + g 71 -6.6 -4.21974 | opp_overlap 159681 159714, overlap 159681 159714 CGGGATCGGCGGCAA ACGCTGGG TTT TCCAGCGC TTTGTTAAATGCTGC TERM 195 159730 - 159714 - G 70 -9.4 -3.53811 | opp_overlap 159681 159713 159714, overlap 159681 GGGATCGGCGGCAAA CGCTGG GTTTT CCAGCG CTTTGTTAAATGCTG TERM 196 161383 - 161399 + g 77 -10.1 -3.65812 | overlap 161392 GGTGTCGCTGTCACT GCGGCTT CGG GAGCCGC TTCTGTTGCGGGCGA TERM 197 161663 - 161644 - R 84 -11.4 -3.14564 | GTATCTTTTCATTAA GCCCCTGC GAGT GCAAGGGC TGCCAAGGGTTTATC Shewana3_0141 162843 - 161725 - | hypothetical protein TERM 198 163081 - 163054 - R 100 -13.6 -5.42265 | opp_overlap 163054 TTAAACCATAAAAAA GGCTTGAATAAG CAAG CCTATTCAAGCC TTGGTATATCAATGT TERM 199 163054 - 163081 + r 86 -11.4 -3.33261 | opp_overlap 163054 TTAAACCATAAAAAA GGCTTGAATAAG CAAG CCTATTCAAGCC TTGGTATATCAATGT Shewana3_0142 164336 - 163107 - | sodium:dicarboxylate symporter Shewana3_0143 164796 - 165149 + | hypothetical protein TERM 200 165217 - 165189 - T 100 -13.1 -3.52192 | CTTAAGTTGAGATAA GCGCCCCGGAG GAATCAA CTCAGGGGCGC GGAGGGAGTAAGGTT Shewana3_0144 166965 - 165232 - | hypothetical protein Shewana3_0145 167372 - 168835 + | OmpA/MotB domain-containing protein TERM 201 168862 - 168900 + T 100 -13.3 -4.05033 | opp_overlap 168867, overlap 168867 TGATTCAATGGATAT AAAAATGGCGTCAGCTC TTGTC GAGTTGGCGCCATTTTG TTTATCTGCGATCGC TERM 202 168895 - 168867 - T 100 -8.8 -5.00642 | opp_overlap 168862 168867 CAATGGATATAAAAA TGGCGTCAGCTC TTGTC GAGTTGGCGCCA TTTTGTTTATCTGCG TERM 203 168867 - 168895 + T 100 -13.2 -5.05113 | opp_overlap 168867, overlap 168862 CAATGGATATAAAAA TGGCGTCAGCTC TTGTC GAGTTGGCGCCA TTTTGTTTATCTGCG Shewana3_0146 170513 - 168954 - | AbgT putative transporter TERM 204 170017 - 169990 - G 70 -3.2 -4.83169 | overlap 169991 169992 ACGGTCGCAGAAAAA CCGCCGGATACG CCAG CAAAAGCGGCGG CAATACCGGCTAGGG TERM 205 170719 - 170670 - R 100 -20.3 -3.45405 | opp_overlap 170682, overlap 170682 GCCATAAAATCAACA GGCAAATAAAAAGCGCGGGTTCA TCGC TGAACCCGCGCTTTTTACTCAAC AATGTGTTTGATTAC TERM 206 170707 - 170682 - R 100 -19.1 -5.31519 | opp_overlap 170682, overlap 170670 ACAGGCAAATAAAAA GCGCGGGTTCA TCGC TGAACCCGCGC TTTTTACTCAACAAT TERM 207 170682 - 170707 + r 100 -19.1 -4.7254 | opp_overlap 170682 170670 ACAGGCAAATAAAAA GCGCGGGTTCA TCGC TGAACCCGCGC TTTTTACTCAACAAT Shewana3_0147 172302 - 170761 - | phosphoenolpyruvate carboxykinase TERM 208 172467 - 172484 + r 100 -12.7 -4.1196 | opp_overlap 172467 AGGCGGTACAAAAAA GGGCACC CTAA GGTGCCC TTTTAACAGTCAATT TERM 209 172484 - 172467 - R 100 -12.7 -5.24531 | opp_overlap 172467 AGGCGGTACAAAAAA GGGCACC CTAA GGTGCCC TTTTAACAGTCAATT hslO 173365 - 172505 - | Hsp33-like chaperonin Shewana3_0149 173800 - 173402 - | RNA-binding S4 domain-containing protein TERM 210 173829 - 173819 - H 79 -6.8 -4.66537 | GTCTCCAAGATAAAA GCTC GAT GAGC TCACATGCTGAGCAA TERM 211 173883 - 173897 + H 73 -10 -3.04398 | opp_overlap 173879 173880, overlap 173882 ATGATGTTAAAGGGT GGTGTG CTT CACACC CTTTTGAGGCGGGCA TERM 212 173984 - 174006 + H 70 -3.5 -4.91109 | opp_overlap 174001, overlap 173963 CAAATGCGGCCTAGG TTAGCATGT GGCGA ACATTCTAA TTTTTATAATCAGAA Shewana3_0150 174052 - 174978 + | general secretion pathway protein C TERM 213 176829 - 176805 - g 70 -2.1 -4.93316 | overlap 176808 176810 176826 TAAGAAGACCAAAAA GAACCTGATGA TCT TTATCAAGCCC ACCATTATCCGTGAT Shewana3_0151 175003 - 177111 + | general secretion pathway protein D TERM 214 177359 - 177377 + G 79 -11 -3.53761 | GGATTTGCCGCTGGT CTTGCTCG AGC CGGGCAAG TTTGAGGCGAAATTA Shewana3_0152 177108 - 178673 + | type II secretion system protein E (GspE) TERM 215 178876 - 178836 - g 79 -8.1 -4.29845 | opp_overlap 178846 GAAGCCAAGTCAAAA GGCACCGGATTCTCGCCCT TTA AGCGCGGGATTTCGGTGGC GGAATTAGCGTTGAT Shewana3_0153 178677 - 179900 + | general secretion pathway protein F Shewana3_0154 179970 - 180404 + | general secretion pathway protein G TERM 216 180422 - 180457 + G 86 -8.2 -4.71426 | overlap 180423 TGTTAACGCTGCGCC ACGCCGGCTTCACCTT GATG GAGGTGATGCTGGTGA TTTTGTTAATGGGAC TERM 217 180423 - 180456 + G 80 -11.7 -3.42374 | overlap 180422 GTTAACGCTGCGCCA CGCCGGCTTCACCTT GATG GAGGTGATGCTGGTG ATTTTGTTAATGGGA TERM 218 180559 - 180537 - g 83 -2.7 -5.40072 | gap 1 GGCGCTGGAAAAAAA TGCGCAGCAA TTTA TCGCCGC-CA CAGAGCTAGTGCTGG Shewana3_0155 180406 - 180978 + | general secretion pathway protein H Shewana3_0156 180965 - 181333 + | general secretion pathway protein I TERM 219 181369 - 181380 + G 76 -5.8 -4.66953 | TGCTGGAAATGCTGA TCGC GATT GCGA TTTTTGCCATGTTAG Shewana3_0157 181314 - 182081 + | general secretion pathway protein J TERM 220 182628 - 182606 - g 79 -12 -3.21416 | GACGCCGAGTACGAA GCGCGAAATG TGC CATATCGCGC CGCGAATACCCTGAT Shewana3_0158 182078 - 183076 + | general secretion pathway protein K Shewana3_0159 183125 - 184312 + | general secretion pathway protein L TERM 221 184370 - 184383 + G 73 -5.2 -4.73613 | opp_overlap 184367, overlap 184366 184379 CGAGCAGCAAATCGT CGGC TTCGGC GCCG TTTTCTTAGTGATCG Shewana3_0160 184314 - 184790 + | general secretion pathway M protein Shewana3_0161 184805 - 185566 + | type II secretion system protein N TERM 222 185598 - 185613 + T 100 -10.4 -5.26119 | opp_overlap 185598 GATTGATTCGATAAA GGCACC TTAG GGTGCC TTTTGTTTTTAAAGG TERM 223 185613 - 185598 - T 86 -10.4 -3.89822 | opp_overlap 185598 GATTGATTCGATAAA GGCACC TTAG GGTGCC TTTTGTTTTTAAAGG Shewana3_0162 186292 - 185630 - | methyl-accepting chemotaxis sensory transducer Shewana3_0163 186398 - 187012 + | aspartyl/asparaginyl beta-hydroxylase TERM 224 187022 - 187032 + G 76 -8.2 -4.19238 | overlap 187031 GCCTGATGCAGGGCA GCGC GAG GCGC TTTTGAGATTAAAGC TERM 225 187470 - 187488 + G 70 -8.8 -3.61902 | GCATATTTCGATGTA GCGGATCG TGT CGATGCGC TTATCTGTGCTGACG TERM 226 188744 - 188765 + G 76 -5.1 -4.90381 | gap 1, opp_overlap 188746, overlap 188744 188745 188756 GATTTATCTGACAGA T-ACCCCTGC CGA GCAGGGGGCA TTTTGTTGTGTTCCC TERM 227 188762 - 188746 - g 80 -13.7 -3.00022 | opp_overlap 188745 188744 188744 188756 TTTATCTGACAGATA CCCCTGC CGA GCAGGGG GCATTTTGTTGTGTT TERM 228 188814 - 188803 - g 73 -5.8 -4.45771 | ACCTCAAAATAGAAA CCTG GCTA CAGG AACGAAACAAGACTG Shewana3_0164 186990 - 189002 + | phytanoyl-CoA dioxygenase Shewana3_0165 188999 - 190165 + | hypothetical protein Shewana3_0166 190152 - 190640 + | GCN5-related N-acetyltransferase Shewana3_0167 190875 - 191510 + | phage tail collar domain-containing protein Shewana3_0168 191630 - 202264 + | Ig family protein TERM 229 202295 - 202283 - f 100 -10.5 -4.39568 | opp_overlap 202283 ATGTATACATCAAAA GGGGC TTA GCCCC TTTTTTGTTGGTGAA TERM 230 202283 - 202295 + F 100 -10.5 -5.5112 | opp_overlap 202283 ATGTATACATCAAAA GGGGC TTA GCCCC TTTTTTGTTGGTGAA nudE 202502 - 203053 + | ADP-ribose diphosphatase NudE Shewana3_0170 203124 - 203936 + | 3'(2'),5'-bisphosphate nucleotidase Shewana3_0171 203943 - 204386 + | GCN5-related N-acetyltransferase TERM 231 204407 - 204430 + F 100 -18.2 -5.31456 | opp_overlap 204393 204407 AGTTCAACCTCGAAA TGGCGCCCTC GATT GAGGGCGCCA TTTTTTATGCGTTGA TERM 232 204430 - 204407 - f 100 -18.2 -3.60971 | opp_overlap 204407, overlap 204393 AGTTCAACCTCGAAA TGGCGCCCTC GATT GAGGGCGCCA TTTTTTATGCGTTGA TERM 233 205060 - 205050 - g 74 -6.8 -4.36914 | overlap 205051 TGTTCCCCCATAAAA CTGC TGA GCAG CAACTCCAAATGAGC Shewana3_0172 204617 - 205228 + | TetR family transcriptional regulator TERM 234 205370 - 205392 + G 70 -2.6 -4.98616 | overlap 205372 TGTTTGTCAATTTGG CTGCAGGG GTCTTTA TCCTGCCG TTTTTCCTATTTTCG Shewana3_0173 205219 - 207084 + | phospholipid/glycerol acyltransferase TERM 235 207385 - 207402 + G 70 -9.9 -3.29471 | TAAGAGTGATGCGCA GGGACAT GTCG ATGTCCC TTGGTCTAGTGAAGC TERM 236 208300 - 208320 + G 71 -6.9 -4.17296 | overlap 208301 AGCGGCCTTTGATGA TTCGTCGAT GAC ATCGATGAG TTTCTATGTATGGGG Shewana3_0174 207152 - 208465 + | hypothetical protein TERM 237 208471 - 208516 + T 100 -8.3 -5.16071 | opp_overlap 208479 208480, overlap 208473 208480 AACGTATTAGTTTTG CAGGAAAAGCACCGCTGTACG CCAT TGTGCGGCGGTGTATTTTCTA TTTTTATTAATAGTT TERM 238 208473 - 208514 + T 93 -10.9 -4.19587 | opp_overlap 208479 208480, overlap 208471 208480 CGTATTAGTTTTGCA GGAAAAGCACCGCTGTACG CCAT TGTGCGGCGGTGTATTTTC TATTTTTATTAATAG TERM 239 208480 - 208507 + T 100 -12 -4.09378 | opp_overlap 208480 208479, overlap 208473 208471 GTTTTGCAGGAAAAG CACCGCTGTACG CCAT TGTGCGGCGGTG TATTTTCTATTTTTA Shewana3_0175 209620 - 208523 - | tRNA 2-selenouridine synthase TERM 240 209157 - 209145 - G 73 -3.3 -5.03314 | overlap 209146 CGCAGTCTTAAAAAA TCGGT TTT ACCGC TTCCCGTCATACCGC Shewana3_0176 210678 - 209620 - | selenophosphate synthase TERM 241 210751 - 210726 - R 89 -12.6 -2.8214 | opp_overlap 210724 210723 210726, overlap 210723 210721 210728 ATCATCATAATAGGA TACGGCCACC ATGCAA GGCGGCCGTA TGATTTTTACCGAGA TERM 242 210726 - 210751 + r 77 -10.4 -3.23708 | opp_overlap 210726 210723 210721 210728, overlap 210724 210723 ATCATCATAATAGGA TACGGCCACC ATGCAA GGCGGCCGTA TGATTTTTACCGAGA TERM 243 210749 - 210728 - R 79 -10.8 -2.9544 | opp_overlap 210726 210724 210723, overlap 210726 210723 210721 CATCATAATAGGATA CGGCCACC ATGCAA GGCGGCCG TATGATTTTTACCGA Shewana3_0177 211902 - 210775 - | Delta-9 acyl-phospholipid desaturase TERM 244 211231 - 211220 - G 71 -5.8 -4.39828 | AACATCGCCAGAAAA CCGT TGTC ACGG GCGGTGTTTTTATCG Shewana3_0178 212025 - 212639 + | DNA-binding transcriptional repressor FabR TERM 245 212687 - 212665 - T 100 -15 -4.75174 | opp_overlap 212665 212669, overlap 212669 GATTTAACCCAAAAA TAAAGGAGCC ATT GGCTCCTTTA TTTTTAGGTACATAG TERM 246 212665 - 212687 + T 100 -15 -4.67353 | opp_overlap 212665 212669, overlap 212669 GATTTAACCCAAAAA TAAAGGAGCC ATT GGCTCCTTTA TTTTTAGGTACATAG TERM 247 212683 - 212669 - T 100 -11.4 -4.91473 | opp_overlap 212665 212669, overlap 212665 TAACCCAAAAATAAA GGAGCC ATT GGCTCC TTTATTTTTAGGTAC TERM 248 212669 - 212683 + T 100 -11.4 -4.89063 | opp_overlap 212669 212665, overlap 212665 TAACCCAAAAATAAA GGAGCC ATT GGCTCC TTTATTTTTAGGTAC Shewana3_0179 213806 - 212709 - | tRNA (uracil-5-)-methyltransferase Shewana3_0180 213948 - 214769 + | glutamate racemase Shewana3_0181 215245 - 214781 - | RNP-1-like RNA-binding protein TERM 249 215395 - 215379 - H 73 -3.7 -4.96848 | TTTCTCAGATAAAAA TTCGCTT TTA AATCGAA TAACAAAGCAGAAAG TERM 250 215640 - 215614 - H 81 -7.2 -4.66609 | overlap 215616 TACTTGACGCAAAAA CGGGAATGCGTA GAA TACGCAGCCCTG ACCCGCTGAAATCAC TERM 251 215762 - 215740 - H 70 -7.1 -3.76952 | gap 1 TTGAGTTAATCGAAA TTACTCTGCC GTTT GGC-GAGTAA TCAAAATTTAAATCA TERM 252 217714 - 217743 + H 100 -9.5 -5.00884 | opp_overlap 217713 AATCTGGTTAGAGAT GCCAAAGATAA ACTGAAAA TTATCTTTGGC TTTTTTAAGCCCGCT TERM 253 217867 - 217827 - H 76 -2.7 -5.27779 | opp_overlap 217834 217839 217841 217846, overlap 217841 GTTAATACGAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 254 218447 - 218435 - H 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 255 219245 - 219229 - H 85 -9.4 -4.08546 | overlap 219242 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 256 219699 - 219727 + H 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 257 221157 - 221193 + H 84 -11 -3.72051 | opp_overlap 221166, overlap 221166 CCAAGCGCCTAATGA AACAAAAAAGCCAGCT GCATA AGCTGGCTTTTTTGCA TTTAGCGTTCTTAAC TERM 258 221184 - 221166 - H 100 -10.3 -5.72053 | opp_overlap 221157 221166 TAATGAAACAAAAAA GCCAGCT GCATA AGCTGGC TTTTTTGCATTTAGC TERM 259 221166 - 221184 + H 100 -10.3 -5.22039 | opp_overlap 221166, overlap 221157 TAATGAAACAAAAAA GCCAGCT GCATA AGCTGGC TTTTTTGCATTTAGC Shewana3_0182 221318 - 222373 + | UDP-N-acetylmuramate dehydrogenase TERM 260 222587 - 222608 + G 74 -2.3 -5.13722 | gap 1, opp_overlap 222590, overlap 222588 222592 CTCAGCGCGGTTAAT TCAGTCGATT GAT AATCG-CTGC TTTTATTTTGATGAG Shewana3_0183 222366 - 223325 + | biotin--protein ligase Shewana3_0184 224277 - 223327 - | pantothenate kinase TERM 261 224574 - 224587 + H 74 -6.7 -4.25283 | CCCGAGTTCGACTCT TGGTG CCGG CACCA TTTTACTGGAGGGGT TERM 262 224840 - 224824 - H 76 -10.9 -2.62616 | overlap 224826 TCAGTTGGTAGAGCA CACCCTT GGT AAGGGTG AGGTCGGCAGTTCGA TERM 263 224911 - 224935 + H 85 -4.4 -5.4492 | gap 1, overlap 224913 TACCTAAATAATCGG TTCGATGTCAT TTAT ATG-CATCGGA TTTTTTCTATATGTA Shewana3_0185 224989 - 226173 + | elongation factor Tu TERM 264 226194 - 226223 + F 84 -10.9 -3.69734 | opp_overlap 226201, overlap 226201 AACTTGCTATAGTAC TGAAAAAGGAAGC TTCG GCTTCCTTTTTTG TTTAAGTCGATTATT TERM 265 226201 - 226216 + F 100 -9 -5.65927 | opp_overlap 226201, overlap 226194 TATAGTACTGAAAAA GGAAGC TTCG GCTTCC TTTTTTGTTTAAGTC TERM 266 226216 - 226201 - f 100 -9 -4.69664 | opp_overlap 226201 226194 TATAGTACTGAAAAA GGAAGC TTCG GCTTCC TTTTTTGTTTAAGTC secE 226453 - 226824 + | preprotein translocase subunit SecE Shewana3_0187 226834 - 227385 + | transcription antitermination protein nusG TERM 267 227419 - 227404 - f 75 -3.2 -5.23644 | opp_overlap 227413 227416, overlap 227405 AATTAAATACAAAAA TCCGTT TGGC AACGGG TGCGGATTTCTATAT TERM 268 227413 - 227449 + F 100 -16.7 -4.07568 | opp_overlap 227405 227404 227437, overlap 227416 CAAAAATCCGTTTGG CAACGGGTGCGGATT TCTATAT AATCCGCCCCCGTTG TTTTCGGGGGAGCAC TERM 269 227416 - 227446 + F 100 -12.6 -4.17048 | opp_overlap 227405 227404 227437, overlap 227413 AAATCCGTTTGGCAA CGGGTGCGGATT TCTATAT AATCCGCCCCCG TTGTTTTCGGGGGAG TERM 270 227681 - 227659 - g 80 -2.7 -5.36441 | overlap 227661 CCCGTACAGAAAAAA TGGAAAAAG GCATG CCTATTCCA GTCGTGATCACTGTA rplK 227514 - 227942 + | 50S ribosomal protein L11 rplA 227947 - 228648 + | 50S ribosomal protein L1 TERM 271 228654 - 228690 + F 100 -22.6 -2.53015 | opp_overlap 228658, overlap 228658 AGCTAACTAATTTTA CAAAGTGCGCGCATTA GTCTA TAATGCGCGCACTTTG TGGGTTGAAGCCTGT TERM 272 228658 - 228686 + F 100 -17.6 -3.97368 | opp_overlap 228658, overlap 228654 AACTAATTTTACAAA GTGCGCGCATTA GTCTA TAATGCGCGCAC TTTGTGGGTTGAAGC TERM 273 228686 - 228658 - f 100 -17.6 -3.93638 | opp_overlap 228658 228654 AACTAATTTTACAAA GTGCGCGCATTA GTCTA TAATGCGCGCAC TTTGTGGGTTGAAGC TERM 274 228700 - 228736 + F 79 -10.9 -3.05384 | opp_overlap 228732, overlap 228713 ACTTTGTGGGTTGAA GCCTGTTTTTTGATGCG TAA CGCATTGTGAAACGGGC TTCCGTCCAAGACCG TERM 275 229058 - 229048 - g 73 -3.2 -5.00616 | GGTCTGCGTAAAAAA GCTC GTG AAGC TGGTGTTTATGTACG rplJ 228916 - 229416 + | 50S ribosomal protein L10 TERM 276 229434 - 229402 - f 77 -6.4 -4.72272 | gap 1, opp_overlap 229405 229408 CTGCGCGATCAAAAA CAAGAAGCC-GCTTA ATTT TAAGCTGGCTGCTTA ATAAAATTGAATTCA rplL 229471 - 229842 + | 50S ribosomal protein L7/L12 TERM 277 229882 - 229907 + F 100 -13.3 -5.08169 | AGCCAATTGGGTGGA GGCTGGCGGTT TTTT AACCGTCGGCC TTTTTTGCGCTATAT Shewana3_0192 230085 - 234122 + | DNA-directed RNA polymerase, beta subunit TERM 278 234180 - 234155 - f 82 -10.4 -3.65812 | opp_overlap 234154 234153, overlap 234156 CGTTTGGCAACAGAA TGGTGCTCCG TGCGAG CGGAGCACCC GGTTTAACTCCTTCA TERM 279 234179 - 234156 - f 95 -13.9 -2.79273 | opp_overlap 234154 234153, overlap 234155 GTTTGGCAACAGAAT GGTGCTCCG TGCGAG CGGAGCACC CGGTTTAACTCCTTC Shewana3_0193 234206 - 238423 + | DNA-directed RNA polymerase subunit beta' TERM 280 238459 - 238445 - f 100 -12.8 -5.06816 | opp_overlap 238445 AGTTTGTAACAAAAA GGCGCC GAT GGCGCC TTTTTTATTGTAAAA TERM 281 238445 - 238459 + F 100 -12.8 -5.55769 | opp_overlap 238445 AGTTTGTAACAAAAA GGCGCC GAT GGCGCC TTTTTTATTGTAAAA rpsL 238603 - 238977 + | 30S ribosomal protein S12 Shewana3_0195 239060 - 239530 + | 30S ribosomal protein S7 TERM 282 239536 - 239559 + F 100 -16.8 -4.03167 | CCGTTGGTAATCTGA TGGTGTGGGC TTAG GCCCACACCA TTGTTGTTGATATTG TERM 283 239926 - 239942 + G 70 -4.3 -4.6391 | overlap 239917 239924 239929 TTCTTTGCGCGTTCT CGACGGC GCT GTCGTGG TTTTCTGTGGTTCTT TERM 284 240931 - 240894 - g 82 -7.7 -4.70583 | opp_overlap 240892 240894 CGGACCAAGATAAAA TGGGTATCGCGCTGCAA AAAC TTGCAGCGGAAGATCCA TCTTTCCGGGTTGAG TERM 285 241419 - 241399 - g 71 -5.3 -4.57073 | opp_overlap 241397 241395 241399 TATGGGCTTCAAAAA GGGTGCGCT CGA AGCGAATCC TGTGTTGCTCGAGCC Shewana3_0196 239609 - 241705 + | elongation factor G TERM 286 241735 - 241750 + F 72 -7.6 -3.78934 | ATAAATGTAATATGG TCCTGT TGAT ACAGGA TTATTCTGAAAAGAA Shewana3_0197 241777 - 242961 + | elongation factor Tu TERM 287 242982 - 243011 + F 100 -13.1 -4.14511 | opp_overlap 242989, overlap 242989 AACGAGTTATAGTAC TGAAAAAGGAAGC TTCG GCTTCCTTTTTTA TTTTGGGCTGGCGTT TERM 288 243004 - 242989 - f 100 -9 -4.69664 | opp_overlap 242989 242982 TATAGTACTGAAAAA GGAAGC TTCG GCTTCC TTTTTTATTTTGGGC TERM 289 242989 - 243004 + F 100 -9 -5.79595 | opp_overlap 242989, overlap 242982 TATAGTACTGAAAAA GGAAGC TTCG GCTTCC TTTTTTATTTTGGGC TERM 290 243225 - 243265 + F 80 -2.7 -5.4251 | gap 2, opp_overlap 243225, overlap 243228 CGAACGGTTAAATCA TCTCGCTCT-GCTT-TTCC AGTAA GGAAGAAGCTAGAGGGTGA TTTTTTATGTGTCCA rpsJ 243299 - 243610 + | 30S ribosomal protein S10 TERM 291 244188 - 244168 - g 71 -6.9 -4.21194 | opp_overlap 244168 TGTTACTACTCAAAA TCTAGACGT TGT ACGTGTAGA TGTTGAACGTAACCT rplC 243638 - 244276 + | 50S ribosomal protein L3 rplD 244294 - 244899 + | 50S ribosomal protein L4 rplW 244896 - 245201 + | 50S ribosomal protein L23 rplB 245218 - 246042 + | 50S ribosomal protein L2 rpsS 246057 - 246335 + | 30S ribosomal protein S19 rplV 246351 - 246683 + | 50S ribosomal protein L22 rpsC 246693 - 247385 + | 30S ribosomal protein S3 TERM 292 247464 - 247485 + G 87 -9.5 -4.34402 | GCGGTCTAGCGAACG GTACCGAAG TTAG CTTTGGTAC TTTTGGTCTGAAAGC rplP 247397 - 247807 + | 50S ribosomal protein L16 Shewana3_0207 247807 - 247998 + | 50S ribosomal protein L29 Shewana3_0208 247998 - 248246 + | SSU ribosomal protein S17P TERM 293 248265 - 248293 + F 100 -12.5 -5.20216 | opp_overlap 248269 TATTAGGTATTTAGG TAAACGGCTCCAG TAT TTGGGGCCGTTTG TTTTTTAATACTATA TERM 294 248289 - 248269 - f 73 -8.2 -3.66999 | opp_overlap 248265 AGGTATTTAGGTAAA CGGCTCCA GTATT TGGGGCCG TTTGTTTTTTAATAC rplN 248425 - 248793 + | 50S ribosomal protein L14 TERM 295 248968 - 248945 - g 79 -7.4 -4.55446 | CAAGAAACACCAAAA GCCAAACCCA CAAC TGGGTGTAGC CGGTGGTATTGTTGA TERM 296 249101 - 249081 - g 80 -4.7 -5.09173 | GAAGACGGCAAAAAA GTTCGTTTC TTT AAATCGAAC AGTGAACTCGTTAAG rplX 248805 - 249119 + | 50S ribosomal protein L24 rplE 249132 - 249671 + | 50S ribosomal protein L5 rpsN 249682 - 249987 + | 30S ribosomal protein S14 rpsH 250012 - 250404 + | 30S ribosomal protein S8 rplF 250415 - 250948 + | 50S ribosomal protein L6 rplR 250959 - 251309 + | 50S ribosomal protein L18 rpsE 251322 - 251825 + | 30S ribosomal protein S5 rpmD 251832 - 252014 + | 50S ribosomal protein L30 rplO 252018 - 252452 + | 50S ribosomal protein L15 TERM 297 252963 - 252947 - g 71 -10.9 -3.16564 | opp_overlap 252949 TTGTGAGCTTAGTAA CAGGAAC CAT GTTCCTG ATGTGGCTAGGTGAG TERM 298 253805 - 253756 - g 79 -8.7 -4.24342 | gap 1, opp_overlap 253756 253774, overlap 253770 253774 TCTGTGATGAAGAAA GCTAACCTAGTAAACAAAGCGAAC TTA GATCGCTTTGGTCGCTAAG-TAGC TTTACGGAGTGATGA TERM 299 253792 - 253770 - g 80 -10.6 -3.79668 | opp_overlap 253756 253774, overlap 253756 253774 AGCTAACCTAGTAAA CAAAGCGAAC TTA GATCGCTTTG GTCGCTAAGTAGCTT TERM 300 253788 - 253774 - g 71 -5.6 -4.5123 | opp_overlap 253774 253756, overlap 253770 253756 AACCTAGTAAACAAA GCGAAC TTA GATCGC TTTGGTCGCTAAGTA secY 252460 - 253800 + | preprotein translocase subunit SecY rpmJ 253822 - 253935 + | 50S ribosomal protein L36 TERM 301 253940 - 253975 + F 74 -7.6 -3.93256 | opp_overlap 253942 253944, overlap 253942 253943 GTCAAGGCTAATTGA AAGATTGTTCAGCCCA GTTT TGGGCTGAACAAAATA TTGTTTGCAAATCTG TERM 302 253942 - 253973 + F 80 -10.2 -3.55202 | opp_overlap 253942 253944, overlap 253940 253943 CAAGGCTAATTGAAA GATTGTTCAGCCCA GTTT TGGGCTGAACAAAA TATTGTTTGCAAATC TERM 303 253973 - 253942 - f 86 -10.2 -3.76839 | opp_overlap 253942 253940 253943, overlap 253944 CAAGGCTAATTGAAA GATTGTTCAGCCCA GTTT TGGGCTGAACAAAA TATTGTTTGCAAATC TERM 304 253943 - 253972 + F 93 -13.7 -2.72639 | opp_overlap 253942 253944, overlap 253942 253940 AAGGCTAATTGAAAG ATTGTTCAGCCCA GTTT TGGGCTGAACAAA ATATTGTTTGCAAAT TERM 305 253971 - 253944 - f 100 -17.2 -3.46336 | opp_overlap 253943 253942 253940, overlap 253942 AGGCTAATTGAAAGA TTGTTCAGCCCA GTTT TGGGCTGAACAA AATATTGTTTGCAAA rpsM 254051 - 254407 + | 30S ribosomal protein S13 Shewana3_0222 254422 - 254814 + | 30S ribosomal protein S11 rpsD 254846 - 255466 + | 30S ribosomal protein S4 Shewana3_0224 255491 - 256480 + | DNA-directed RNA polymerase subunit alpha rplQ 256521 - 256916 + | 50S ribosomal protein L17 TERM 306 256940 - 256956 + T 100 -13.7 -6.20267 | opp_overlap 256940 ACAAAGATTGAAAAA CCGGGCT CTA AGCCCGG TTTTTTTGTTTTTAG TERM 307 256956 - 256940 - T 100 -13.7 -4.7889 | opp_overlap 256940 ACAAAGATTGAAAAA CCGGGCT CTA AGCCCGG TTTTTTTGTTTTTAG Shewana3_0226 257986 - 256982 - | hypothetical protein TERM 308 257231 - 257219 - G 79 -9.1 -4.17089 | opp_overlap 257228 GCTAAATCCCCAAAA GCCGA AAT TCGGC ACCGGCGTGTGGTTA TERM 309 258054 - 258071 + r 73 -5.5 -4.63044 | opp_overlap 258056, overlap 258056 258061 GAATGGACAATAAAA AAGCCTC CGAA GAGGCTC TTTGTTTATCTAAAT TERM 310 258056 - 258069 + r 74 -8.1 -3.91983 | opp_overlap 258056, overlap 258054 258061 ATGGACAATAAAAAA GCCTC CGAA GAGGC TCTTTGTTTATCTAA TERM 311 258069 - 258056 - R 100 -8.1 -5.56673 | opp_overlap 258056 258054 258061 ATGGACAATAAAAAA GCCTC CGAA GAGGC TCTTTGTTTATCTAA Shewana3_0227 258586 - 258101 - | cytochrome c-type biogenesis protein CcmE Shewana3_0228 258783 - 258583 - | Heme exporter protein D (CcmD) Shewana3_0229 259529 - 258783 - | heme exporter protein CcmC TERM 312 259061 - 259073 + g 74 -7.7 -4.1891 | AGATCCCTGCTGCAC GTGCT GCC AGCAC TTTGTCTTCGAAGGA Shewana3_0230 260217 - 259531 - | heme exporter protein CcmB Shewana3_0231 260879 - 260229 - | cytochrome c biogenesis protein CcmA Shewana3_0232 261205 - 261504 + | cytochrome c, class I TERM 313 261517 - 261546 + T 100 -16.7 -2.89564 | opp_overlap 261525, overlap 261525 TAATTTTTGCAGTGT TAAAAAAACCGGC ATTA GCCGGTTTTTTTA TGTCTGCGCTAAGCC TERM 314 261525 - 261538 + T 100 -9.5 -5.76633 | opp_overlap 261525, overlap 261517 GCAGTGTTAAAAAAA CCGGC ATTA GCCGG TTTTTTTATGTCTGC TERM 315 261538 - 261525 - T 100 -9.5 -5.42259 | opp_overlap 261525 261517 GCAGTGTTAAAAAAA CCGGC ATTA GCCGG TTTTTTTATGTCTGC Shewana3_0233 262835 - 261588 - | TPR repeat-containing protein TERM 316 262067 - 262082 + g 74 -4.7 -4.81083 | TATTGAGAATGGTTT GCCAT GAATCA ATGGC TTTTTGATAGTTAGC TERM 317 262880 - 262867 - H 79 -8.1 -4.37886 | TTAGTTTGCATAAAA GCGGT TGTT ACCGC CGGCTTGGAAGCAAG Shewana3_0234 263235 - 265214 + | cytochrome c-type biogenesis protein CcmF Shewana3_0235 265226 - 265780 + | periplasmic protein thiol--disulphide oxidoreductase DsbE Shewana3_0236 265777 - 266256 + | cytochrome C biogenesis protein Shewana3_0237 266253 - 266834 + | redoxin domain-containing protein TERM 318 266874 - 266888 + F 100 -10 -5.79595 | opp_overlap 266874 CGCCATTGTAGAAAA GATCGC CAT GCGATC TTTTTTCTTTTAAAA TERM 319 266888 - 266874 - f 93 -10 -4.4009 | opp_overlap 266874 CGCCATTGTAGAAAA GATCGC CAT GCGATC TTTTTTCTTTTAAAA TERM 320 267050 - 267019 - f 75 -8.8 -3.60627 | overlap 267029 267042 GCAGTTGATTCGAAA GCATCAAGAAGTTT GTAA AAACGCCTTGACGC GACAAGGGAAATGCG TERM 321 267076 - 267062 - f 75 -8.6 -3.80893 | ACGCGACAAGGGAAA TGCGTA GAA TACGCA GCCCTGACCCGCTGA TERM 322 267203 - 267181 - f 70 -7.1 -3.76952 | gap 1 TTGAGTTAATCGAAA TTACTCTGCC GTTT GGC-GAGTAA TCAAAATTTAAATCA TERM 323 269070 - 269030 - f 84 -2.7 -5.63374 | opp_overlap 269037 269042 269044 269049, overlap 269044 TTAATACGAAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 324 269645 - 269633 - f 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 325 270443 - 270427 - f 85 -9.4 -4.08546 | overlap 270440 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 326 270897 - 270925 + F 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 327 272475 - 272508 + F 100 -13.3 -3.35996 | opp_overlap 272475 272482, overlap 272482 CTCCGCCAACACAAA GAGATAAGCCTCATC GAAA GATGAGGCTTTTTTC GTTTTATCTGTACCA TERM 328 272508 - 272475 - f 93 -11.1 -4.1891 | opp_overlap 272475 272482, overlap 272482 CTCCGCCAACACAAA GAGATAAGCCTCATC GAAA GATGAGGCTTTTTTC GTTTTATCTGTACCA TERM 329 272501 - 272482 - f 100 -12.2 -3.82789 | opp_overlap 272475 272482, overlap 272475 AACACAAAGAGATAA GCCTCATC GAAA GATGAGGC TTTTTTCGTTTTATC TERM 330 272482 - 272501 + F 100 -12.2 -5.50313 | opp_overlap 272482 272475, overlap 272475 AACACAAAGAGATAA GCCTCATC GAAA GATGAGGC TTTTTTCGTTTTATC Shewana3_0239 272673 - 273185 + | hypothetical protein TERM 331 273192 - 273223 + T 84 -11.6 -3.18681 | overlap 273193 273199 AAATCATAATCCCCA TCGCACAGCAGAGT GTTT GCTTTGCTGTGCGC TTAATGCGGTTGAGG TERM 332 273193 - 273222 + T 100 -15.1 -2.50994 | overlap 273192 273199 AATCATAATCCCCAT CGCACAGCAGAGT GTTT GCTTTGCTGTGCG CTTAATGCGGTTGAG Shewana3_0240 274540 - 273224 - | ATPase domain-containing protein TERM 333 274157 - 274175 + g 81 -13.2 -3.13403 | overlap 274155 ATTCTTGACTATGGT CTGGCTGA ACA TCAGCCAG TGTTCCTGCCCAACA Shewana3_0241 275205 - 274543 - | two component transcriptional regulator Shewana3_0242 275471 - 275205 - | peptidase Shewana3_0243 276027 - 275464 - | diheme cytochrome c Shewana3_0244 276509 - 276075 - | cytochrome c-type protein Shp Shewana3_0245 277139 - 276543 - | cytochrome B561 Shewana3_0246 277346 - 277768 + | hypothetical protein Shewana3_0247 277797 - 278285 + | hypothetical protein Shewana3_0248 279199 - 278282 - | LysR family transcriptional regulator TERM 334 279412 - 279391 - g 73 -5.1 -4.65895 | TGGCTTAGGTAAAAA TGCGGCC CTGACCTT AGCCGCA CAAGGTGTTGATATT Shewana3_0249 279335 - 280096 + | short-chain dehydrogenase/reductase SDR TERM 335 280137 - 280117 - T 100 -15.5 -4.96501 | opp_overlap 280117 280121, overlap 280121 TGCGATAAAAACAAA GAAAGGGCC CAT GGCCCTTTC TTGTTATCAAGGCAT TERM 336 280117 - 280137 + T 100 -15.5 -3.79113 | opp_overlap 280117 280121, overlap 280121 TGCGATAAAAACAAA GAAAGGGCC CAT GGCCCTTTC TTGTTATCAAGGCAT TERM 337 280133 - 280121 - T 100 -10.5 -4.96845 | opp_overlap 280117 280121, overlap 280117 ATAAAAACAAAGAAA GGGCC CAT GGCCC TTTCTTGTTATCAAG TERM 338 280121 - 280133 + T 100 -10.5 -4.51812 | opp_overlap 280121 280117, overlap 280117 ATAAAAACAAAGAAA GGGCC CAT GGCCC TTTCTTGTTATCAAG Shewana3_0250 281686 - 280166 - | aldehyde dehydrogenase TERM 339 280199 - 280217 + g 71 -6 -4.33105 | ATTGATATCGTAGCT CACCAATA GGT TTTTGGTG TTTTGATAGTGATTA TERM 340 280707 - 280726 + g 70 -4.2 -4.65895 | TTGCCCTGCTTGATG GTTTGCGC ACGG GCGAGAAC TTTTTCGATAAAGCG TERM 341 282026 - 282006 - H 100 -13.3 -3.05596 | CATTTTGTCATCCAA CGACACACC ATG GGTGTGCCG AAATGGAGCAGCGCT Shewana3_0251 282029 - 283915 + | Fis family GAF modulated sigma54 specific transcriptional regulator TERM 342 283936 - 283970 + T 100 -10.8 -4.7629 | opp_overlap 283938 283941, overlap 283938 GTTGACTGTTGATGA TATAAGCCCCGCTAAC TGT GTTAGCGAGCCTTATG TTTTTAGGTTGGTAA TERM 343 283968 - 283938 - T 93 -13.4 -2.78816 | opp_overlap 283936 283938, overlap 283941 TGACTGTTGATGATA TAAGCCCCGCTAAC TGT GTTAGCGAGCCTTA TGTTTTTAGGTTGGT TERM 344 283938 - 283968 + T 90 -11.2 -3.99461 | opp_overlap 283938 283941, overlap 283936 TGACTGTTGATGATA TAAGCCCCGCTAAC TGT GTTAGCGAGCCTTA TGTTTTTAGGTTGGT TERM 345 283965 - 283941 - T 83 -10.7 -3.54475 | opp_overlap 283938 283936, overlap 283938 CTGTTGATGATATAA GCCCCGCTAAC TGT GTTAGCGAGCC TTATGTTTTTAGGTT Shewana3_0252 285323 - 283974 - | ATPase domain-containing protein Shewana3_0253 286024 - 285338 - | two component transcriptional regulator Shewana3_0254 286327 - 286818 + | protein of unknown function, Spy-related TERM 346 286897 - 286941 + G 91 -13 -4.02817 | gap 1 CCCAATACGATTTTT GGGTCAAACTGGCTAGTCGCG CTTC CGTGGCTA-CCGCTTTGACCC TTATTCTTATCAAGC TERM 347 287110 - 287138 + G 74 -6.5 -4.32177 | opp_overlap 287093 287106, overlap 287111 GCCACGGTAAAGCGG AGCCGTTAGCGTC GCT GGCGCAATCGGCC TTTATTATGGGCTCG TERM 348 287111 - 287137 + G 70 -10 -3.18824 | opp_overlap 287093 287106, overlap 287110 CCACGGTAAAGCGGA GCCGTTAGCGTC GCT GGCGCAATCGGC CTTTATTATGGGCTC Shewana3_0255 286869 - 287768 + | cation diffusion facilitator family transporter Shewana3_0256 287807 - 288217 + | hypothetical protein Shewana3_0257 288404 - 288817 + | outer membrane protein, putative TERM 349 288862 - 288874 + T 70 -7.7 -3.68351 | GCTTTAGCTACGATG TCACC ACA GGTGA TTTAGATGCTGACCA TERM 350 288985 - 289016 + T 100 -8.2 -4.75372 | opp_overlap 288986 288993, overlap 288986 288993 GAGTTAATCCAAATA ATAAAAAAGGGATA GTGA TATCCCTTTTTTGC TTTTTAATGGATGCT TERM 351 288986 - 289015 + T 89 -11.7 -3.445 | opp_overlap 288986 288993, overlap 288985 288993 AGTTAATCCAAATAA TAAAAAAGGGATA GTGA TATCCCTTTTTTG CTTTTTAATGGATGC TERM 352 289015 - 288986 - T 83 -9.5 -4.01381 | opp_overlap 288986 288985 288993, overlap 288993 AGTTAATCCAAATAA TAAAAAAGGGATA GTGA TATCCCTTTTTTG CTTTTTAATGGATGC TERM 353 288993 - 289008 + T 100 -7.6 -5.54079 | opp_overlap 288986 288993, overlap 288986 288985 CCAAATAATAAAAAA GGGATA GTGA TATCCC TTTTTTGCTTTTTAA TERM 354 289008 - 288993 - T 100 -7.6 -5.72254 | opp_overlap 288993 288986 288985, overlap 288986 CCAAATAATAAAAAA GGGATA GTGA TATCCC TTTTTTGCTTTTTAA Shewana3_0258 290440 - 289031 - | nitrogen metabolism transcriptional regulator, NtrC, Fis family TERM 355 289302 - 289314 + g 74 -7.7 -4.1822 | opp_overlap 289302 AGCTCTTGGGGTAAA TCCTG GGG CAGGA TTTCTTGCCCTGAGG TERM 356 289768 - 289798 + g 70 -4.7 -4.72272 | gap 2, overlap 289782 GCTCGAAGCGTCCTT GGCGCACGTTGGCCG CGC CGGTGAA-G-GCGCC TTTTTCATGGCCGAA TERM 357 290050 - 290067 + g 70 -8.3 -3.76402 | overlap 290046 TGACTTGCGTCTCCT GCGCCGC AGGT GCGGGGC TTTGCTCGGTCGCAT Shewana3_0259 291530 - 290484 - | signal transduction histidine kinase, nitrogen specific, NtrB Shewana3_0260 292185 - 291652 - | hypothetical protein TERM 358 291882 - 291932 + g 72 -8.3 -3.93782 | gap 1 ACTGGCTTTTGATCT CTG-GGGTGACAGTGGCGGTGACT TGAA AGTCTCCGTTATTGTCTCTCACGG TTTCCTCTTCCGTAG TERM 359 292439 - 292423 - R 93 -12.3 -3.12999 | TTAGGGGAGAGTCAA CGCACCA CTA TGGTGCG TTGACGGCGGCAACC Shewana3_0261 293617 - 292460 - | iron-containing alcohol dehydrogenase Shewana3_0262 294363 - 293767 - | TetR family transcriptional regulator Shewana3_0263 294791 - 294480 - | hypothetical protein TERM 360 295370 - 295386 + G 76 -2.9 -5.0809 | TCAACGCTCAAATCC CTCAACA AGC TGCTGGG TTTTTATGATTTGTT TERM 361 295410 - 295424 + G 73 -2.8 -5.02074 | ATTTGTTTATCATCT CCGA TGACGGT TCGG TTTTTTACACAGTGG TERM 362 296280 - 296258 - g 71 -11.2 -2.72661 | overlap 296272 CATGAGTTGGAATCA GCCGCAGAGC AAA ACTCGGCGGC AATGAGCCAAGCCGA Shewana3_0264 295103 - 297058 + | methyl-accepting chemotaxis sensory transducer TERM 363 297113 - 297138 + T 100 -11.9 -5.27335 | overlap 297114 GCCGTTTGTTATGCA TCCGCCAGAAA GGAT TATCTGGCGGA TTTTTCTTTAGGGCG Shewana3_0265 299271 - 297172 - | hypothetical protein TERM 364 297843 - 297830 - G 70 -3.1 -4.7629 | CCATTAACGCAAAAA TTCGG TACA CCAAA GTACTCGGCGCCATA TERM 365 298580 - 298609 + g 85 -11.7 -3.68302 | gap 1, overlap 298583 CTCACTAAGTACTTT GAGGCTTTAAAGTC GGC GACTTTAAAGC-TC TTGTTACCGTATTCG TERM 366 298583 - 298607 + g 88 -14.5 -3.41726 | overlap 298580 ACTAAGTACTTTGAG GCTTTAAAGTC GGC GACTTTAAAGC TCTTGTTACCGTATT TERM 367 298658 - 298670 + g 85 -4.1 -5.40072 | TTGTCTTGCTCTTTT TTACC TAA GGTGA TTTTTTTACCCGCCA TERM 368 299377 - 299390 + H 71 -3.1 -5.03314 | ATCAACAAAATGTGG CAGTT ATTG AGCTG TTTTTTCAAGCTAAC Shewana3_0266 299571 - 300554 + | 2OG-Fe(II) oxygenase Shewana3_0267 300704 - 301093 + | hypothetical protein Shewana3_0268 301666 - 302505 + | site-specific DNA-methyltransferase (adenine-specific) TERM 369 302644 - 302666 + F 100 -13.5 -5.47218 | GTTGGTTCGCATGTT TGCCCCGTT TCCCC AACGGGGCA TTTTTTTAGCTCGAA Shewana3_0269 302810 - 304267 + | diguanylate cyclase Shewana3_0270 304385 - 305080 + | MOSC domain-containing protein Shewana3_0271 305117 - 305473 + | hypothetical protein TERM 370 305491 - 305535 + T 95 -13.2 -3.1096 | gap 1, opp_overlap 305500, overlap 305500 GCTTTTAAAGTGATT C-AATAAAAACGCCTTAGGGA GAAC TCGCTAAGGCGTTTTTGTTTG GTTTTAACCTATCTT TERM 371 305500 - 305525 + T 100 -11.9 -5.43974 | opp_overlap 305500, overlap 305491 GTGATTCAATAAAAA CGCCTTAGGGA GAAC TCGCTAAGGCG TTTTTGTTTGGTTTT TERM 372 305525 - 305500 - T 100 -11.9 -5.10461 | opp_overlap 305500 305491 GTGATTCAATAAAAA CGCCTTAGGGA GAAC TCGCTAAGGCG TTTTTGTTTGGTTTT Shewana3_0272 307471 - 305555 - | methyl-accepting chemotaxis sensory transducer TERM 373 307763 - 307741 - R 100 -16.4 -4.90013 | opp_overlap 307744 GAAGGCAAGCAAAAA TAAGGCGCTC AAT GAGCGCCTTA TTCCGGTTGAGTTAC TERM 374 307744 - 307760 + r 100 -13.7 -3.6849 | opp_overlap 307741 GGCAAGCAAAAATAA GGCGCTC AAT GAGCGCC TTATTCCGGTTGAGT Shewana3_0273 309424 - 307775 - | electron transfer flavoprotein-ubiquinone oxidoreductase moaA 309765 - 310778 + | molybdenum cofactor biosynthesis protein A moaC 310891 - 311370 + | molybdenum cofactor biosynthesis protein C Shewana3_0276 311390 - 311641 + | molybdopterin synthase subunit MoaD Shewana3_0277 311643 - 312110 + | molybdopterin synthase subunit MoaE TERM 375 312576 - 312556 - g 100 -11.1 -4.59853 | opp_overlap 312547 TGAATGGCGTAAAAA GCTTGCTCG CCG CGGGCAAGC TGGAGCGCTTTGCGA TERM 376 312676 - 312648 - g 72 -4 -4.8543 | gap 1, opp_overlap 312648 312652, overlap 312652 GAACTCCTACAAAAA TTAGGTTTGTGGG ACGG CCTACAAAC-TAA GTTAATCCTGGGCGA Shewana3_0278 312150 - 312953 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Shewana3_0279 312962 - 313642 + | molybdate ABC transporter, inner membrane subunit Shewana3_0280 313623 - 314726 + | ABC transporter related TERM 377 315338 - 315322 - g 78 -2.2 -5.30616 | overlap 315331 315335 TTATTGAAACAAAAA GCGG GTAAAGTCA CCGC CGACGATGTTGGCGA Shewana3_0281 315052 - 315573 + | hypothetical protein Shewana3_0282 315620 - 316297 + | two component transcriptional regulator TERM 378 316783 - 316795 + G 70 -3.4 -4.77173 | CCATAGTGTTAACCT TAGC GTTGG GCTA TTTGTTTTCTAAGGC Shewana3_0283 316368 - 317603 + | ATPase domain-containing protein Shewana3_0284 317636 - 318325 + | pseudouridine synthase Rlu family protein Shewana3_0285 318445 - 318612 + | hypothetical protein TERM 379 318662 - 318630 - T 84 -11.6 -3.20723 | gap 1, opp_overlap 318637, overlap 318637 GTTCTAGTAATCCAA TA-AAAAAGCGCAAC CTAG GTTGCGCTTTTTATA CGGTAAATTTAGCGT TERM 380 318637 - 318654 + T 100 -11.3 -4.85599 | opp_overlap 318637 318630 TAATCCAATAAAAAA GCGCAAC CTAG GTTGCGC TTTTTATACGGTAAA TERM 381 318654 - 318637 - T 100 -11.3 -5.5074 | opp_overlap 318637, overlap 318630 TAATCCAATAAAAAA GCGCAAC CTAG GTTGCGC TTTTTATACGGTAAA Shewana3_0286 320854 - 318683 - | TonB-dependent receptor Shewana3_0287 321158 - 321349 + | hypothetical protein Shewana3_0288 321874 - 321362 - | peptidase M23B Shewana3_0289 322477 - 321896 - | hypothetical protein Shewana3_0290 323184 - 322495 - | CHAP domain-containing protein Shewana3_0291 324492 - 323374 - | Zn-dependent hydrolase of the beta-lactamase fold TERM 382 324531 - 324509 - H 100 -12.2 -4.44974 | opp_overlap 324514 GTAAACTTGATAAAA GTAAACTACA CAG TGTAGTTTAC TCAGGGTTGTGCAAA Shewana3_0292 324598 - 325209 + | TetR family transcriptional regulator TERM 383 325227 - 325268 + T 93 -8.9 -4.4715 | opp_overlap 325228 325231 325234, overlap 325229 325234 TTTTCTTTCGTATCA ATCATAAGGCCGATAAT ACTTTCAC ATTATCGGCCTTATGTG TTTTATCGCTTCAAA TERM 384 325267 - 325228 - T 100 -13.8 -3.14132 | opp_overlap 325227 325229 325234, overlap 325231 325234 TTTCTTTCGTATCAA TCATAAGGCCGATAATAC TTTC ACATTATCGGCCTTATGT GTTTTATCGCTTCAA TERM 385 325229 - 325266 + T 100 -15.9 -3.84304 | opp_overlap 325228 325231 325234, overlap 325227 325234 TTCTTTCGTATCAAT CATAAGGCCGATAAT ACTTTCAC ATTATCGGCCTTATG TGTTTTATCGCTTCA TERM 386 325264 - 325231 - T 95 -14.1 -2.77899 | opp_overlap 325229 325227 325234, overlap 325228 325234 CTTTCGTATCAATCA TAAGGCCGATAATAC TTTC ACATTATCGGCCTTA TGTGTTTTATCGCTT TERM 387 325234 - 325261 + T 84 -10 -3.86658 | opp_overlap 325231 325228 325234, overlap 325229 325227 TCGTATCAATCATAA GGCCGATAAT ACTTTCAC ATTATCGGCC TTATGTGTTTTATCG TERM 388 325261 - 325234 - T 89 -11.4 -3.54029 | opp_overlap 325234 325229 325227, overlap 325231 325228 TCGTATCAATCATAA GGCCGATAATAC TTTC ACATTATCGGCC TTATGTGTTTTATCG Shewana3_0293 326633 - 325290 - | anaerobic C4-dicarboxylate transporter TERM 389 326737 - 326722 - H 71 -9 -3.33969 | GAATGGATTTGAGAA CTTGCG CTGG CGCAAG GTGTAAATAAAAAGT Shewana3_0294 326917 - 328095 + | hypothetical protein Shewana3_0295 328100 - 329221 + | aminotransferase, class V TERM 390 329307 - 329333 + T 83 -11.7 -3.02745 | opp_overlap 329307 329306 CGATATAACATCAAC CCTTAGTCTCA CTGGT TGAGGCTAAGG TAATTTATGGGTGGC Shewana3_0296 329680 - 329357 - | hypothetical protein Shewana3_0297 331109 - 329865 - | sodium:dicarboxylate symporter TERM 391 330036 - 330026 - G 79 -5.4 -4.9218 | CAGTGACGATAAAAA TCTC CCC GAGA AAAGCGCCGCCCGGC TERM 392 330053 - 330040 - G 71 -5.9 -4.37092 | ATCTCCCCGAGAAAA GCGCC GCCC GGCAC GCCGCCAATGATGAA Shewana3_0298 331765 - 331499 - | hypothetical protein TERM 393 331724 - 331755 + g 87 -12.5 -3.95621 | opp_overlap 331731, overlap 331731 CTGCTTGCATCGGCA TAAAAAACGGTCC ACTTGG GGACCGTTTTTTG TTTGTGGCATTTGCT TERM 394 331731 - 331748 + g 100 -8.4 -5.72622 | opp_overlap 331731, overlap 331724 CATCGGCATAAAAAA CGGTCC ACTTGG GGACCG TTTTTTGTTTGTGGC TERM 395 331748 - 331731 - G 100 -8.4 -5.252 | opp_overlap 331731 331724 CATCGGCATAAAAAA CGGTCC ACTTGG GGACCG TTTTTTGTTTGTGGC Shewana3_0299 334062 - 331825 - | TonB-dependent siderophore receptor TERM 396 334432 - 334409 - R 100 -18.2 -5.4492 | opp_overlap 334409 GATAGAGACAAAAAA GCCCCGACAG AAGA CTGTCGGGGC TTTTAGATGTTGTGC TERM 397 334409 - 334432 + r 100 -18.2 -4.30441 | opp_overlap 334409 GATAGAGACAAAAAA GCCCCGACAG AAGA CTGTCGGGGC TTTTAGATGTTGTGC glnA 335879 - 334470 - | glutamine synthetase TERM 398 335529 - 335546 + g 79 -5.5 -5.03314 | opp_overlap 335538 AGCGATACCGGTAGA GCGTAAG TATT CTTCCGC TTTTTTCGCGATAGA TERM 399 336649 - 336635 - H 74 -7 -4.37544 | overlap 336637 CGATAACAAGATAAA CTGGCG AAT CGCCTG CGCATTAACGGTGCA TERM 400 336697 - 336717 + H 79 -11.3 -2.50789 | overlap 336696 336695 GGGCAAGAGAGTGGC TTTTGAGCA CTG TGCTCAAAA AATTGTTTTATAAGT TERM 401 336772 - 336742 - H 100 -9.6 -4.60255 | overlap 336745 ATAAGTGTTCAAAAA TAATCCTGTGCGGC GAG GCCGCTCTGGAGTA GAATGTCACGCTTTT TERM 402 336769 - 336745 - H 100 -11.3 -4.40963 | overlap 336742 AGTGTTCAAAAATAA TCCTGTGCGGC GAG GCCGCTCTGGA GTAGAATGTCACGCT Shewana3_0301 336865 - 338676 + | GTP-binding protein TypA TERM 403 338722 - 338747 + T 100 -19.1 -5.25803 | opp_overlap 338722 CACAGAGTGAATAAA GCCCCGCTAAG GCAA CTTAGCGGGGC TTTTTTATCAGCCTT TERM 404 338747 - 338722 - T 100 -19.1 -4.24285 | opp_overlap 338722 CACAGAGTGAATAAA GCCCCGCTAAG GCAA CTTAGCGGGGC TTTTTTATCAGCCTT Shewana3_0302 339769 - 338762 - | AraC family transcriptional regulator TERM 405 340261 - 340247 - g 79 -5.6 -5.01042 | opp_overlap 340246 340258, overlap 340249 AATGTAAACCAAAAA GGCGTG TAC CACGGC ATCCTTGCCGGTGGC Shewana3_0303 339908 - 340669 + | short-chain dehydrogenase/reductase SDR Shewana3_0304 340714 - 341220 + | hypothetical protein Shewana3_0305 341231 - 342307 + | alcohol dehydrogenase TERM 406 342334 - 342354 + F 100 -11.2 -5.57396 | opp_overlap 342317 342330 342334 GCTCAATCAAATTAA GCCGCTAA CTCAT TTAGCGGC TTTTTTGTTCATTGT TERM 407 342354 - 342334 - f 84 -11.2 -3.61468 | opp_overlap 342334, overlap 342317 342330 GCTCAATCAAATTAA GCCGCTAA CTCAT TTAGCGGC TTTTTTGTTCATTGT TERM 408 343597 - 343561 - g 83 -3 -5.4505 | gap 3, overlap 343562 TGGCTCAACAAAAAA GGCC-C-GGGCACAGGC GCGAAT GCC-GTGACCAGTGGCC TCGAAGGTGCTTGGA TERM 409 343695 - 343685 - g 100 -8.2 -5.53288 | GGGAATTGAAAAAAA GCCC AGC GGGC GCCTCACAGTGGGAA TERM 410 344253 - 344239 - g 100 -7.8 -5.27477 | opp_overlap 344239 AGCCTAAGCAAAAAA GTCAGC ATT GCCGAC TTAATCGTACTGGGC Shewana3_0306 342661 - 344847 + | catalase/peroxidase HPI TERM 411 344881 - 344900 + T 100 -13.6 -5.46276 | opp_overlap 344881 AGCGTGTACATAAAA GGTGCAGC TTGG GCTGCACC TTTTTTATATCTATT TERM 412 344900 - 344881 - T 100 -13.6 -4.52857 | opp_overlap 344881 AGCGTGTACATAAAA GGTGCAGC TTGG GCTGCACC TTTTTTATATCTATT Shewana3_0307 346181 - 344934 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 413 345742 - 345752 + g 76 -6.8 -4.45664 | TCCCACAGGTTGAGC GCCA AAA TGGC TTTTAATTCAATTCC TERM 414 345814 - 345830 + g 88 -10.9 -4.19817 | opp_overlap 345813 345817, overlap 345817 TCGGGGCGCATCAAC CAAGGCA CTA TGCCTTG TTTTAGCTGGATAGC TERM 415 345817 - 345827 + g 71 -6.8 -4.22214 | opp_overlap 345817 345813, overlap 345814 GGGCGCATCAACCAA GGCA CTA TGCC TTGTTTTAGCTGGAT Shewana3_0308 348101 - 346356 - | diguanylate cyclase Shewana3_0309 348941 - 348288 - | hypothetical protein TERM 416 348843 - 348854 + g 76 -5.8 -4.65895 | CATGATGTCGCGCTT GTGG TAGC CCAC TTTTTCCATGGCGCC Shewana3_0310 349192 - 348971 - | hypothetical protein rbn 349274 - 350287 + | ribonuclease BN Shewana3_0312 350384 - 351289 + | prolyl aminopeptidase Shewana3_0313 351286 - 351888 + | hypothetical protein TERM 417 352046 - 352036 - g 72 -4 -4.76312 | overlap 352040 GAGAAGATGGAAAAA TTAG CCA CTAA AGTGATGAGTTATCG TERM 418 352108 - 352120 + G 74 -6.9 -4.39386 | overlap 352118 CTCAACTTAACTCAG GCGGG AGG CTCGC TTTTAGTGGTTTCGC Shewana3_0314 351904 - 352341 + | D-tyrosyl-tRNA deacylase Shewana3_0315 352381 - 352818 + | thioesterase domain-containing protein Shewana3_0316 352952 - 353548 + | azoreductase TERM 419 353568 - 353587 + T 100 -10 -5.38054 | opp_overlap 353568 CAAGATAATAAAAAA TGCCAGCG TAAA TGCTGGCA TTTTTGTTTCTGCAG TERM 420 353587 - 353568 - T 100 -9.3 -5.64304 | opp_overlap 353568 CAAGATAATAAAAAA TGCCAGC GTAAAT GCTGGCA TTTTTGTTTCTGCAG Shewana3_0317 353774 - 353610 - | hypothetical protein Shewana3_0318 354139 - 353816 - | rhodanese domain-containing protein Shewana3_0319 354810 - 354235 - | XRE family transcriptional regulator TERM 421 356095 - 356140 + G 70 -11.3 -2.55074 | opp_overlap 356091 356107, overlap 356102 TGGCACAAGCATCGC GCCTTAACCACAGCTAAAC AGGCAAAA GCTTAGCTGTGGTTAGGTC TAGATTGAGGTTCGC Shewana3_0320 354937 - 356127 + | benzoate transporter Shewana3_0321 356640 - 356185 - | GCN5-related N-acetyltransferase Shewana3_0322 356990 - 357637 + | antibiotic acetyltransferase TERM 422 357704 - 357735 + T 86 -10.3 -3.75845 | opp_overlap 357706 357711, overlap 357706 357711 AAAGGCTGGAGGTAA AATAAAAGCCGAG ATGATG CTCGGCTTTTATC TTTACGATTCTTTTG TERM 423 357733 - 357706 - T 100 -12.9 -4.18197 | opp_overlap 357706 357704 357711, overlap 357711 AGGCTGGAGGTAAAA TAAAAGCCGAG ATGATG CTCGGCTTTTA TCTTTACGATTCTTT TERM 424 357706 - 357733 + T 100 -12.9 -3.44353 | opp_overlap 357706 357711, overlap 357704 357711 AGGCTGGAGGTAAAA TAAAAGCCGAG ATGATG CTCGGCTTTTA TCTTTACGATTCTTT TERM 425 357728 - 357711 - T 100 -8.4 -5.10933 | opp_overlap 357711 357706 357704, overlap 357706 GGAGGTAAAATAAAA GCCGAG ATGATG CTCGGC TTTTATCTTTACGAT TERM 426 357711 - 357728 + T 100 -8.4 -4.79451 | opp_overlap 357706 357711, overlap 357706 357704 GGAGGTAAAATAAAA GCCGAG ATGATG CTCGGC TTTTATCTTTACGAT Shewana3_0323 358269 - 357838 - | hypothetical protein Shewana3_0324 358800 - 358324 - | hypothetical protein TERM 427 359680 - 359651 - R 100 -14.5 -2.68387 | opp_overlap 359657, overlap 359657 GCCTACAAAAGAGAG CAAAAAGCCGAGA TGAT TCTCGGCTTTTTA TTAACGCTTTTACGA TERM 428 359657 - 359674 + r 100 -11.3 -5.08088 | opp_overlap 359657 359651 AAAAGAGAGCAAAAA GCCGAGA TGAT TCTCGGC TTTTTATTAACGCTT TERM 429 359674 - 359657 - R 100 -11.3 -4.91573 | opp_overlap 359657, overlap 359651 AAAAGAGAGCAAAAA GCCGAGA TGAT TCTCGGC TTTTTATTAACGCTT Shewana3_0325 360450 - 359707 - | hypothetical protein Shewana3_0326 361714 - 360461 - | 3-oxoacyl-(acyl carrier protein) synthase II fabG 362440 - 361715 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 430 361798 - 361785 - G 78 -3.7 -5.21709 | TCCGACATTAAAAAA GCGGC TAAG GCGGC GATTTCATTCGGTTT TERM 431 362515 - 362529 + r 70 -7.8 -3.60792 | overlap 362510 CCTTTTGTAGTGCGA CTGACG TTG CGTCGG TTTAAAGCTTGGCGC Shewana3_0328 363105 - 362566 - | thioester dehydrase family protein TERM 432 363158 - 363134 - R 70 -2.8 -5.0538 | gap 1, overlap 363137 CTTTACGGCAAAAAA TCAGGCAGGCA TTGC TGCC-GCCAAA GGCGAAGGAGTTGCT Shewana3_0329 364328 - 363111 - | 3-oxoacyl-(acyl carrier protein) synthase I Shewana3_0330 365159 - 364425 - | hypothetical protein Shewana3_0331 366471 - 365164 - | monooxygenase, FAD-binding TERM 433 365304 - 365324 + g 71 -6.9 -4.19506 | opp_overlap 365293 365304, overlap 365309 CATAGCCCGCCAAAA TCGAGCAGA TCA TCTGTTTGA TTTTAGGATTCGGAT TERM 434 365368 - 365352 - G 73 -2.9 -5.0133 | GATTTTCGTAAAAAA TCACATC TTG GAAGCGA CCATCGTACCAAGCC Shewana3_0332 368991 - 366472 - | hypothetical protein TERM 435 368944 - 368912 - G 85 -12.1 -3.78775 | opp_overlap 368911 368912 368922, overlap 368914 368917 368922 GCCGCCAGCATCAAA CACAACCAAATAGCG AAG CGCCATTTAGTTGAG GTTTGCATCAGGCTG TERM 436 368942 - 368914 - G 84 -13.3 -3.48024 | opp_overlap 368912 368911 368922, overlap 368912 368917 368922 CGCCAGCATCAAACA CAACCAAATAGCG AAG CGCCATTTAGTTG AGGTTTGCATCAGGC TERM 437 368939 - 368917 - G 75 -9.2 -3.87323 | opp_overlap 368912 368911 368922, overlap 368914 368912 368922 CAGCATCAAACACAA CCAAATAGCG AAG CGCCATTTAG TTGAGGTTTGCATCA Shewana3_0333 369843 - 369001 - | hypothetical protein TERM 438 369250 - 369264 + g 74 -4.2 -4.84017 | CTGCCAGTTTGCGCT GCCTGA ACT TGAGGC TTTTTGTGGCGACTT Shewana3_0334 370274 - 369840 - | 4-hydroxybenzoyl-CoA thioesterase Shewana3_0335 371836 - 370271 - | histidine ammonia-lyase Shewana3_0336 373653 - 371833 - | glycosyl transferase family protein Shewana3_0337 374036 - 373662 - | thioester dehydrase family protein Shewana3_0338 375393 - 374029 - | aconitate hydratase Shewana3_0339 375524 - 375390 - | hypothetical protein TERM 439 375599 - 375629 + H 74 -10.6 -2.62192 | opp_overlap 375598 375596 375599, overlap 375598 CCCGTCCTGAAATAC GTTGACATAAAGAG GAT TTCTTTATGACAAC ATTAATTAACTCAAG TERM 440 375629 - 375599 - H 71 -9.9 -2.60496 | opp_overlap 375599 375598, overlap 375598 375596 CCCGTCCTGAAATAC GTTGACATAAAGA GGATT TCTTTATGACAAC ATTAATTAACTCAAG Shewana3_0340 375622 - 376017 + | transposase TERM 441 376341 - 376291 - g 70 -2.6 -5.01546 | gap 1, opp_overlap 376309 AAAGCTACACAAAAA CCACGTTCAGCAAACACTGGATG AAGAAG CATCCTA-ATCTGCTGAAAGAGG AGGGACTGCACGATG TERM 442 376636 - 376616 - g 71 -11.1 -2.79327 | opp_overlap 376616, overlap 376615 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA TERM 443 376616 - 376636 + G 79 -11.1 -3.54029 | opp_overlap 376616 376615 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA Shewana3_0341 376047 - 376850 + | integrase catalytic subunit TERM 444 376847 - 376827 - T 100 -12.6 -4.73682 | GTGCACAATAGAAAA GGCCAGCT ACTGG AGCTGGCC TAAAAACTGTCAACC Shewana3_0342 377240 - 376857 - | hypothetical protein Shewana3_0343 377488 - 377240 - | acyl carrier protein Shewana3_0344 377752 - 377498 - | acyl carrier protein, putative Shewana3_0345 378587 - 377739 - | phospholipid/glycerol acyltransferase TERM 445 377895 - 377915 + g 72 -8.3 -3.93401 | overlap 377883 CATTCCCATGGTTTG CCTTGGGAT CTC ATACCAAGG TTGTTCCTTTGTCAA Shewana3_0346 379314 - 378580 - | hypothetical protein TERM 446 379652 - 379688 + r 77 -11 -2.74501 | opp_overlap 379663, overlap 379663 AAGCTGAAAGTGTGG ATGTAAAAAAAGGCGC ACTAG GCGCCTTTTTTGACAG GTTTGGAGCATTACT TERM 447 379663 - 379677 + r 100 -8.5 -5.03747 | opp_overlap 379663, overlap 379652 GTGGATGTAAAAAAA GGCGC ACTAG GCGCC TTTTTTGACAGGTTT TERM 448 379677 - 379663 - R 100 -8.5 -5.47218 | opp_overlap 379663 379652 GTGGATGTAAAAAAA GGCGC ACTAG GCGCC TTTTTTGACAGGTTT Shewana3_0347 380595 - 379699 - | hypothetical protein Shewana3_0348 382864 - 380774 - | ATP-dependent DNA helicase RecG TERM 449 381135 - 381149 + g 71 -7.1 -4.2231 | overlap 381119 TGTAACTGTGCAAGG CCCAG TCGCT CTGGG TTTTCGATAATCATT TERM 450 381892 - 381908 + g 71 -6.5 -4.21275 | overlap 381882 CGGTGGGCGCCATCA TGGCCAC TTG GTAGCCA TTTTCGATGGCTTGC TERM 451 383117 - 383131 + H 70 -2.8 -5.05228 | opp_overlap 383117, overlap 383119 ATTCGTTATTAATAA CGTACA CTT TGTAAG TTTTTGTGGTTTAAT TERM 452 384015 - 384005 - g 74 -4.6 -4.88407 | overlap 384007 GCATTGAAGGAAAAA GGGC TCA ACCC TGGGCGAGACGTGTT Shewana3_0349 383252 - 384298 + | periplasmic sugar-binding protein, putative TERM 453 384955 - 384925 - g 82 -10.5 -3.93782 | gap 1, opp_overlap 384926, overlap 384926 CTAGCCAAGATGAAA TTGGCCATGTAGCG CAAT CGCTACA-GGCCAT GTATCAGCGCATTCG TERM 454 384926 - 384954 + G 83 -14 -2.87881 | gap 1, opp_overlap 384925 384926 TAGCCAAGATGAAAT TGGCCATGTAGCG CAAT CGCTACA-GGCCA TGTATCAGCGCATTC TERM 455 384954 - 384926 - g 83 -14 -2.95787 | gap 1, opp_overlap 384926, overlap 384925 TAGCCAAGATGAAAT TGGCCATGTAGCG CAAT CGCTACA-GGCCA TGTATCAGCGCATTC TERM 456 385339 - 385354 + G 70 -2.6 -5.02074 | gap 1 CGGAGTCGACGTTAG TC-ATCG AAT CGATTGA TTTTTTAGAGCGTGA TERM 457 385585 - 385597 + G 75 -9.1 -3.84825 | AGCGACAGATGCTCA GCCTG CAA CAGGC TTTAGTGTCGGTGAA Shewana3_0350 384315 - 386132 + | diguanylate cyclase TERM 458 386237 - 386257 + F 79 -6.7 -4.70515 | TTTATTTCTGCTTTG GGGCTGCTA TAA TTGCCGCCC TTTATTTTCCATCTG Shewana3_0351 386284 - 386697 + | hypothetical protein Shewana3_0352 387499 - 386660 - | amino acid ABC transporter periplasmic protein TERM 459 387449 - 387422 - G 74 -12 -2.76261 | gap 1, overlap 387421 CCTTAATGGGGAAAG CTCGTCTGC-GCC ATG GGCAGCAGGCGAG AGCAGAATCACGCAT Shewana3_0353 387672 - 388988 + | hypothetical protein TERM 460 389034 - 389003 - T 89 -12.6 -2.77701 | gap 1, opp_overlap 389003 389004 389011, overlap 389011 ATCTTATCAACATCA TA-AAAAAACGGGAC TCA GTCCCGTTTTTTATA TTGCTACTAAAATTT TERM 461 389003 - 389034 + T 93 -12.6 -3.22491 | gap 1, opp_overlap 389003 389011, overlap 389004 389011 ATCTTATCAACATCA TA-AAAAAACGGGAC TCA GTCCCGTTTTTTATA TTGCTACTAAAATTT TERM 462 389004 - 389032 + T 100 -13.3 -3.17229 | opp_overlap 389003 389011, overlap 389003 389011 TCTTATCAACATCAT AAAAAAACGGGAC TCA GTCCCGTTTTTTA TATTGCTACTAAAAT TERM 463 389025 - 389011 - T 100 -11.4 -5.70829 | opp_overlap 389004 389003 389011, overlap 389003 AACATCATAAAAAAA CGGGAC TCA GTCCCG TTTTTTATATTGCTA TERM 464 389011 - 389025 + T 100 -11.4 -5.49569 | opp_overlap 389011 389003, overlap 389004 389003 AACATCATAAAAAAA CGGGAC TCA GTCCCG TTTTTTATATTGCTA Shewana3_0354 389920 - 389048 - | DNA-binding transcriptional regulator IlvY Shewana3_0355 390117 - 391595 + | ketol-acid reductoisomerase TERM 465 391634 - 391604 - f 79 -11.1 -2.95091 | overlap 391600 AGCTTAATCGATAGA GGCCGAGCCCC TAAGGATGT GGGGCTCGGCG TGACAAATTTATTCC TERM 466 392095 - 392047 - f 74 -6.6 -4.28049 | gap 1, opp_overlap 392051 392087, overlap 392056 392059 CCTAAAAGGTTAAAA GTTTCGAAAGAACCCCCCGCTCC GAAA GGACCGGGGGGTTCTT-CGTTTT CAGGCCCTAGGTTTT TERM 467 392051 - 392091 + F 100 -20.6 -4.08767 | gap 1, opp_overlap 392047 392056 392059, overlap 392087 AAAGGTTAAAAGTTT CGAAAGAACCCCCCGCTCC GAAA GGACCGGGGGGTTCTT-CG TTTTCAGGCCCTAGG TERM 468 392087 - 392056 - f 100 -20.2 -3.60818 | opp_overlap 392051, overlap 392047 392059 TTAAAAGTTTCGAAA GAACCCCCCGCTCC GAAA GGACCGGGGGGTTC TTCGTTTTCAGGCCC TERM 469 392084 - 392059 - f 100 -16.1 -3.92832 | opp_overlap 392051, overlap 392056 392047 AAAGTTTCGAAAGAA CCCCCCGCTCC GAAA GGACCGGGGGG TTCTTCGTTTTCAGG Shewana3_0356 392186 - 393859 + | acetolactate synthase 2 catalytic subunit ilvM 393856 - 394116 + | acetolactate synthase 2 regulatory subunit TERM 470 394570 - 394618 + G 77 -8.9 -4.05033 | gap 1, opp_overlap 394569 394570 TAACTGCGACAAAAT CACCCCCGGCATGTTGATGGCG GCGCTG CGCC-TCAATATCCCCGTGGTG TTTGTGTCGGGTGGG TERM 471 395022 - 394996 - g 71 -7.3 -4.10453 | gap 1, opp_overlap 395015, overlap 394997 TAAAGCCTTTGAAAA CGCCATGGCGCT AGAT ATCGCCATGG-G TGGCTCCTCTAATAC Shewana3_0358 394196 - 396055 + | dihydroxy-acid dehydratase TERM 472 396643 - 396631 - g 74 -7.7 -4.16016 | overlap 396632 CTATCGCCCAAGAAA TGCTG CAA CAGCA GCGCGACCTTGAAGT TERM 473 397173 - 397186 + G 70 -2.3 -4.92314 | opp_overlap 397159, overlap 397174 GTGCCCGAGCGTCCC GGCAG CTTC CTGCG TTTTTGTGAGTTGCT Shewana3_0359 396057 - 397700 + | threonine dehydratase TERM 474 397756 - 397733 - f 70 -8 -3.62418 | opp_overlap 397736, overlap 397736 ACAACTTAGGCTAAA GGAGGGGCGC ACAG GCGCCCCTTT TTGTGGTAGTTTGGT TERM 475 397753 - 397736 - f 100 -14.1 -2.92792 | opp_overlap 397736, overlap 397733 ACTTAGGCTAAAGGA GGGGCGC ACAG GCGCCCC TTTTTGTGGTAGTTT TERM 476 397736 - 397753 + F 100 -14.1 -4.95806 | opp_overlap 397736 397733 ACTTAGGCTAAAGGA GGGGCGC ACAG GCGCCCC TTTTTGTGGTAGTTT Shewana3_0360 397843 - 398976 + | alanine-glyoxylate aminotransferase Shewana3_0361 398978 - 399271 + | hypothetical protein Shewana3_0362 399616 - 399855 + | hypothetical protein TERM 477 400124 - 400141 + G 76 -2.7 -5.1764 | TGTAATGCGTGTTTA TGAAGAA ATTA TTCCTCA TTTTTATCTTATCTA Shewana3_0363 400123 - 400650 + | hypothetical protein TERM 478 400711 - 400685 - T 100 -8.7 -4.82901 | GCTTCCTCATAAAAA CGGCATCGACA TAAGT TGCAGATGCCG CCTGTCGCACTGAAC Shewana3_0364 401550 - 400753 - | phosphatidylglycerophosphatase TERM 479 401617 - 401589 - R 100 -9.5 -5.4505 | opp_overlap 401588, overlap 401590 CTTGCCAATAAAAAA TCCCGACAGCAAA AAA TGCGCTGTCGGGG GTCTTCAAGGGTGGA TERM 480 401616 - 401590 - R 100 -13 -3.86307 | opp_overlap 401588, overlap 401589 TTGCCAATAAAAAAT CCCGACAGCAAA AAA TGCGCTGTCGGG GGTCTTCAAGGGTGG Shewana3_0365 403118 - 401643 - | hypothetical protein TERM 481 403078 - 403058 - G 71 -5.3 -4.49556 | overlap 403060 GCGCCACTAAATAAA TTGCGCCGC CAA ACAGCGCCA AACTCAGTAACGTGA TERM 482 403261 - 403299 + r 71 -4.7 -4.60924 | gap 2 AAAATTATGGCAATC GCCCTGA-TA-CGAGCTAA ATT TTAGGTCGCTGCTCGGGGC TTTTTGCCAAATTTG Shewana3_0366 403808 - 403281 - | hypothetical protein TERM 483 403758 - 403743 - G 74 -4.7 -4.76041 | CATATTCATCAAAAA TGGCA GCTTAG TGCCA TTGCCAGTTTTGCGG Shewana3_0367 404045 - 405211 + | hypothetical protein Shewana3_0368 405573 - 405208 - | hypothetical protein Shewana3_0369 405965 - 405633 - | hypothetical protein TERM 484 406037 - 406011 - R 100 -9.5 -5.93252 | gap 1, opp_overlap 406011 406009 GTTAAAAACAAAAAA GCACAGCT-GCG CTAT CGCTAACTGTGC TCTTTCAAACATGCA Shewana3_0370 406314 - 406060 - | hypothetical protein TERM 485 406427 - 406380 - R 78 -5.5 -5.07652 | opp_overlap 406393, overlap 406393 GCTTTCAAAAGAAAA CCGCCTTGCAAAACCTACGTC TTAAGG GACGTAGGTTTCACTTGGATG CGGTTAGCTGTTGTG TERM 486 406393 - 406414 + r 88 -10.9 -3.76952 | opp_overlap 406380 406393 AACCGCCTTGCAAAA CCTACGTCT TAAG GGACGTAGG TTTCACTTGGATGCG TERM 487 406414 - 406393 - R 91 -10.2 -4.08064 | opp_overlap 406393, overlap 406380 AACCGCCTTGCAAAA CCTACGTC TTAAGG GACGTAGG TTTCACTTGGATGCG Shewana3_0371 409520 - 406431 - | acriflavin resistance protein Shewana3_0372 410652 - 409534 - | RND family efflux transporter MFP subunit TERM 488 410359 - 410373 + g 82 -7.8 -4.62336 | TTTTGCATCGAGTTC GGCCAG TAG TTGGCC TTTTTCCACTCGGCT Shewana3_0373 411244 - 410678 - | TetR family transcriptional regulator TERM 489 410842 - 410810 - G 79 -8.5 -4.38141 | opp_overlap 410810 410809 410807 410813, overlap 410807 GGCGATAGAAAATAA CAAGGCATTATTCAA TGG TTGGATGACGCCTTG ATCTTTCGCCTGCTC Shewana3_0374 411568 - 413583 + | ATP-dependent DNA helicase Rep TERM 490 413610 - 413577 - T 100 -15.5 -4.61231 | opp_overlap 413580 413584 GGATATGTTTAAAAA GCAGTAATCACAAGA TTCA TCATGTGATTACTGC ATTCAGGCACAGACC TERM 491 413580 - 413607 + T 70 -10 -2.52464 | opp_overlap 413577, overlap 413584 TATGTTTAAAAAGCA GTAATCACAAGA TTCA TCATGTGATTAC TGCATTCAGGCACAG Shewana3_0375 416243 - 413613 - | diguanylate cyclase/phosphodiesterase with GAF sensor TERM 492 413683 - 413653 - G 88 -3.8 -5.55769 | overlap 413655 413668 TCTGACAATAAAAAA GGTGAGGCTAAGGC ACC GCCTTGGCCAAAGC GATAACCTAATGCGT TERM 493 414005 - 413994 - G 86 -5.8 -5.14563 | overlap 413976 413996 CTTTTCATTAAAAAA CAGC CATA GCTG TGGCAGTGCAAGCTT TERM 494 414967 - 414986 + g 80 -3.4 -5.24416 | opp_overlap 414957 414967, overlap 414961 414969 TTCAACTCGGCAAGA GCCGTGGT GCGG GCCGCGAC TTTTTCTTCTAATTC TERM 495 416166 - 416181 + g 70 -2.5 -5.055 | ATGCGCCAAATATTT GAGGC GATTAA GTCTC TTTTTTAAGCGTTCA TERM 496 416890 - 416919 + r 100 -7.9 -5.4492 | gap 1, opp_overlap 416890 416899 ACCAATTACATTGAA GCCTCAG-AATTCC TTA GGAATCACTGGGGC TTTTTTGTATCTGTC TERM 497 417051 - 417028 - R 100 -14 -3.90744 | opp_overlap 417032 TCCCCGCTCAAATAA TTAAGGCTCC CGTA GGAGCCTTAA TACAAAGATATTCGA TERM 498 417032 - 417047 + r 77 -10.4 -3.14683 | opp_overlap 417028 CGCTCAAATAATTAA GGCTCC CGTA GGAGCC TTAATACAAAGATAT Shewana3_0376 418987 - 417068 - | diguanylate cyclase/phosphodiesterase Shewana3_0377 419703 - 418996 - | hypothetical protein TERM 499 419393 - 419383 - G 71 -6.8 -4.18488 | ATTTACGCCAATAAA CTCC ATT GGAG TCGCCCAGTAGTTTG Shewana3_0378 420330 - 419722 - | OmpA/MotB domain-containing protein TERM 500 419783 - 419816 + g 70 -8.7 -3.57144 | GTCGTCGTATCATCA CCGGTCACTTCCGCG ACTA CGCGGCGGTTACGGG TTTCAGCATCAGGCG Shewana3_0379 421742 - 420327 - | TolC family type I secretion outer membrane protein Shewana3_0380 423151 - 421769 - | HlyD family type I secretion membrane fusion protein TERM 501 422082 - 422094 + g 76 -6.3 -4.65153 | opp_overlap 422082 422077 422075 422076, overlap 422077 TGTAAAAACGCAATA TCCTT AGG AAGGA TTTTGGTTTCTATCA TERM 502 422344 - 422330 - G 71 -5.6 -4.55295 | opp_overlap 422333, overlap 422333 TGCGGCATAAACAAA CACCGC CTC ACGGCG TTTTAATATGGCTTC TERM 503 422333 - 422344 + g 76 -7.2 -4.36931 | opp_overlap 422330 422333 GGCATAAACAAACAC CGCC TCAC GGCG TTTTAATATGGCTTC TERM 504 422698 - 422712 + g 71 -5 -4.54681 | opp_overlap 422698 TGCTATCGGGGAATA CCAAAG CTT TTTTGG TTATTTTTACTTGCT TERM 505 422784 - 422796 + g 76 -6.3 -4.59773 | overlap 422774 422782 AATTCTGCGCGCATG CGAAT TGC ATTCG TTTTTAAACCTAAAA Shewana3_0381 425325 - 423148 - | ABC transporter related TERM 506 424530 - 424542 + g 73 -3.3 -4.91511 | overlap 424522 TTGCCATGCCTCCAA CACTC GGA GAGCG TTTTTCTAATGGAAT TERM 507 425367 - 425408 + r 100 -9.5 -4.63932 | opp_overlap 425364 425367, overlap 425365 TGATTATCAGAAGTA TCGGTCATGATGGCCTATA TTTC TATAGGCCATCCGAACTGA TTTTATTAAGGAATC TERM 508 425408 - 425367 - R 70 -9.5 -2.87243 | opp_overlap 425365 425367, overlap 425364 TGATTATCAGAAGTA TCGGTCATGATGGCCTATA TTTC TATAGGCCATCCGAACTGA TTTTATTAAGGAATC Shewana3_0382 442933 - 425414 - | putative outer membrane adhesin like proteiin TERM 509 438295 - 438323 + g 77 -11.7 -3.17206 | overlap 438290 438299 TGTCTTGGGTGATGC TGGTGATGGCCAC GGT GTTGCCGTCGCCA TCTTCATCAATCTTG TERM 510 438299 - 438325 + g 81 -13 -3.22448 | overlap 438295 438290 TTGGGTGATGCTGGT GATGGCCACGGT GTT GCCGTCGCCATC TTCATCAATCTTGGT TERM 511 438622 - 438650 + g 77 -11.7 -3.17206 | overlap 438617 438626 TGTCTTGGGTGATGC TGGTGATGGCCAC GGT GTTGCCGTCGCCA TCTTCATCAATCTTG TERM 512 438626 - 438652 + g 81 -13 -3.22448 | overlap 438622 438617 TTGGGTGATGCTGGT GATGGCCACGGT GTT GCCGTCGCCATC TTCATCAATCTTGGT TERM 513 438949 - 438977 + g 77 -11.7 -3.17206 | overlap 438944 438953 TGTCTTGGGTGATGC TGGTGATGGCCAC GGT GTTGCCGTCGCCA TCTTCATCAATCTTG TERM 514 438953 - 438979 + g 81 -13 -3.22448 | overlap 438949 438944 TTGGGTGATGCTGGT GATGGCCACGGT GTT GCCGTCGCCATC TTCATCAATCTTGGT TERM 515 439276 - 439304 + g 77 -11.7 -3.17206 | overlap 439271 439280 TGTCTTGGGTGATGC TGGTGATGGCCAC GGT GTTGCCGTCGCCA TCTTCATCAATCTTG TERM 516 439280 - 439306 + g 81 -13 -3.22448 | overlap 439276 439271 TTGGGTGATGCTGGT GATGGCCACGGT GTT GCCGTCGCCATC TTCATCAATCTTGGT TERM 517 439607 - 439633 + g 81 -13 -3.22448 | overlap 439598 TTGGGTGATGCTGGT GATGGCCACGGT GTT ACCGTCGCCGTC TTCATCAATCTTGGT TERM 518 441580 - 441599 + g 76 -7.9 -4.41494 | opp_overlap 441580 TGGTGTAGGTAATTA CTGGAAC TTGGCC GTTCCAG TTTTCATTCGGGGTA TERM 519 441883 - 441902 + g 76 -7.9 -4.41494 | opp_overlap 441883 TGGTGTAGGTAATCA CTGGAAC TTGGCC GTTCCAG TTTTCATTCGGGGTA TERM 520 442954 - 442937 - R 77 -8.5 -3.99957 | CCAAAGATGCACAAA TCCAACA AATG TGTTGGA TAGTGATACAAGTGA Shewana3_0383 444458 - 443292 - | HemY domain-containing protein TERM 521 444048 - 444058 + g 91 -6.8 -5.17488 | overlap 444028 444029 GGCAAGATATTGATC TCGC TCG GCGA TTTTATTTTGATGTT Shewana3_0384 445696 - 444455 - | protein of unknown function DUF513, hemX TERM 522 444692 - 444666 - G 77 -11.6 -3.42699 | opp_overlap 444638 AGTGATTGATGATAA GCCGCTCTATCA TAG CGATAGAGCGCC AGTTGAGATTGCAGC Shewana3_0385 446455 - 445757 - | uroporphyrinogen III synthase HEM4 hemC 447434 - 446502 - | porphobilinogen deaminase TERM 523 447464 - 447481 + H 74 -9.9 -3.16492 | overlap 447461 CGAGATCTTAGTTGC GCCAATG CTAA CATTGGC TATTCGTGAATGTAA cyaA 447637 - 450051 + | adenylate cyclase Shewana3_0388 450420 - 450091 - | frataxin family protein TERM 524 450658 - 450609 - g 78 -6.3 -4.85599 | gap 1, overlap 450613 GTCAGCCTACAAAAA TCAAGGCGCCGAAGAGTGAGGCAA CCC CTGCCG-ACACGGCGGCGCCTCAA GCTGAAACTGAAAAA Shewana3_0389 450488 - 450682 + | hypothetical protein TERM 525 451557 - 451574 + G 74 -6.9 -4.2828 | AGCCGGGTCGTGCCA TCGCCGC TAAC GCGGGGA TTTTCGTCACTCAGG Shewana3_0390 450725 - 451969 + | diaminopimelate decarboxylase dapF 452040 - 452867 + | diaminopimelate epimerase Shewana3_0392 452864 - 453499 + | hypothetical protein Shewana3_0393 453548 - 454447 + | tyrosine recombinase XerC Shewana3_0394 454447 - 455169 + | HAD family hydrolase Shewana3_0395 455318 - 455896 + | HupE/UreJ protein Shewana3_0396 456404 - 455901 - | putative transcriptional regulator TERM 526 456455 - 456482 + r 100 -18.6 -3.35798 | opp_overlap 456455 456459, overlap 456459 AACACGCCAAAATAA CAAAGGCCAGCA GTTG TGCTGGCCTTTG TTGTGAATCAGCAGT TERM 527 456482 - 456455 - R 100 -18.6 -4.2142 | opp_overlap 456455 456459, overlap 456459 AACACGCCAAAATAA CAAAGGCCAGCA GTTG TGCTGGCCTTTG TTGTGAATCAGCAGT TERM 528 456459 - 456478 + r 100 -13.6 -4.33417 | opp_overlap 456455 456459, overlap 456455 CGCCAAAATAACAAA GGCCAGCA GTTG TGCTGGCC TTTGTTGTGAATCAG TERM 529 456478 - 456459 - R 100 -13.6 -4.67697 | opp_overlap 456459 456455, overlap 456455 CGCCAAAATAACAAA GGCCAGCA GTTG TGCTGGCC TTTGTTGTGAATCAG Shewana3_0397 457249 - 456503 - | hemerythrin HHE cation binding domain-containing protein TERM 530 457473 - 457452 - R 100 -14.5 -5.09521 | opp_overlap 457452 CTAAGAAAGCAAAAA GGCGAGTCA TTGC TGACTCGCC TTTTTAATACAACAG TERM 531 457452 - 457473 + r 100 -14.5 -4.72272 | opp_overlap 457452 CTAAGAAAGCAAAAA GGCGAGTCA TTGC TGACTCGCC TTTTTAATACAACAG Shewana3_0398 457809 - 457504 - | helix-turn-helix, Fis-type Shewana3_0399 458794 - 457826 - | nifR3 family TIM-barrel protein TERM 532 458824 - 458838 + r 74 -4.2 -5.07486 | opp_overlap 458822, overlap 458811 458826 TAGCTCTTCAAAGGG GCGCTA TAG TAGCCC TTTTTATTGGCCGTG TERM 533 458961 - 458938 - R 90 -13.2 -2.55818 | gap 1, opp_overlap 458933 458939 458940 458944 AATAAGCCTAAGCCA GTGGTGGCGCA TGT TGCGCCACC-C TTTAGCGTTATTTGC TERM 534 458939 - 458961 + r 100 -13.4 -3.74238 | opp_overlap 458938, overlap 458933 458940 458944 ATAAGCCTAAGCCAG TGGTGGCGCA TGT TGCGCCACCC TTTAGCGTTATTTGC TERM 535 458940 - 458960 + r 100 -16.9 -2.8382 | opp_overlap 458938, overlap 458939 458933 458944 TAAGCCTAAGCCAGT GGTGGCGCA TGT TGCGCCACC CTTTAGCGTTATTTG prmA 459850 - 458969 - | ribosomal protein L11 methyltransferase TERM 536 460065 - 460082 + H 71 -4.1 -4.8048 | opp_overlap 460065 TGGTTGTACGCAAAA TCGAACC GCTC GTTTCGA TTTTTAATGTAAAGC Shewana3_0401 460293 - 461018 + | fumarate reductase cytochrome b-556 subunit TERM 537 461030 - 461070 + F 70 -2.7 -4.9138 | gap 2, overlap 461032 461062 TTGATTGAAATCCAA TTCTGCTGCGTTT--ATCC CTGAT GGATTTGGGCGCAGCAGGA TTTTGTTTCGCTGCT TERM 538 461117 - 461136 + F 71 -2.2 -5.19261 | gap 1 ATTAATTATTCGCCT CCT-AGTTG ATC TAACTCAGG TTTTTTGATGGATTT Shewana3_0402 461225 - 461896 + | fumarate reductase respiratory complex, transmembrane subunit Shewana3_0403 461958 - 463964 + | fumarate reductase flavoprotein subunit sdhB 463964 - 464695 + | fumarate reductase iron-sulfur subunit TERM 539 464747 - 464722 - T 77 -6.1 -4.65895 | opp_overlap 464727, overlap 464727 TGTTTGATTCAAAAA GCAAAGCGCCT GATT AGGCGCTTTTT ACTTGGTGAGGTTAG TERM 540 464727 - 464742 + T 100 -10.4 -4.90266 | opp_overlap 464722 464727 GATTCAAAAAGCAAA GCGCCT GATT AGGCGC TTTTTACTTGGTGAG TERM 541 464742 - 464727 - T 100 -10.4 -4.33653 | opp_overlap 464727, overlap 464722 GATTCAAAAAGCAAA GCGCCT GATT AGGCGC TTTTTACTTGGTGAG Shewana3_0405 465043 - 464759 - | antibiotic biosynthesis monooxygenase Shewana3_0406 466062 - 465040 - | alcohol dehydrogenase TERM 542 466990 - 467024 + G 79 -12.1 -3.27029 | overlap 466988 466993 CAATTTATACTTAGT GTGCCCTGGGCGTGA GCATG TCACGCCCGTGGTGC TGTTACTTCGTGAAA TERM 543 466993 - 467021 + G 74 -12.4 -2.81413 | overlap 466990 466988 TTTATACTTAGTGTG CCCTGGGCGTGA GCATG TCACGCCCGTGG TGCTGTTACTTCGTG Shewana3_0407 466181 - 467113 + | LysR family transcriptional regulator TERM 544 467245 - 467259 + T 100 -8.5 -5.03747 | opp_overlap 467245 CGGCGCAATAAAAAA GCCGC ATTAA GCGGC TTTTTTGAAAGATTT TERM 545 467259 - 467245 - T 100 -8.5 -5.4505 | opp_overlap 467245 CGGCGCAATAAAAAA GCCGC ATTAA GCGGC TTTTTTGAAAGATTT rho 468556 - 467291 - | transcription termination factor Rho TERM 546 468197 - 468211 + g 71 -7.2 -4.07568 | opp_overlap 468197, overlap 468193 TTCAGGTTTATCGAA GTTAAC TTC GTTAAC TTTTAGCAGGGCAAA Shewana3_0409 469094 - 468768 - | thioredoxin TERM 547 469319 - 469330 + G 71 -7.2 -3.96705 | GTTAAACAGGCACTT GCCG AAAA CGGC TTTGAATTTTGTACG Shewana3_0410 469247 - 470566 + | ATP-dependent RNA helicase RhlB Shewana3_0411 470567 - 471493 + | Ppx/GppA phosphatase TERM 548 471551 - 471514 - T 100 -16.5 -4.62069 | opp_overlap 471516 471520, overlap 471516 GCTCCATTTTAAAAA GATAAAGGCCGCCAAGT GTAG ACTTAGCGGCCTTTATT ATTTAGCGACTCGAG TERM 549 471516 - 471549 + T 100 -16.9 -3.91716 | opp_overlap 471514 471516, overlap 471520 TCCATTTTAAAAAGA TAAAGGCCGCCAAGT GTAG ACTTAGCGGCCTTTA TTATTTAGCGACTCG TERM 550 471549 - 471516 - T 100 -19.1 -3.92746 | opp_overlap 471516 471520, overlap 471514 TCCATTTTAAAAAGA TAAAGGCCGCCAAGT GTAG ACTTAGCGGCCTTTA TTATTTAGCGACTCG TERM 551 471520 - 471545 + T 100 -13.3 -4.56978 | opp_overlap 471516 471514, overlap 471516 TTTTAAAAAGATAAA GGCCGCCAAGT GTAG ACTTAGCGGCC TTTATTATTTAGCGA Shewana3_0412 472104 - 471568 - | hypothetical protein Shewana3_0413 472650 - 472252 - | mutator MutT protein Shewana3_0414 472894 - 472685 - | hypothetical protein Shewana3_0415 473736 - 473002 - | hypothetical protein Shewana3_0416 474346 - 473729 - | dephospho-CoA kinase TERM 552 473773 - 473789 + g 80 -10.9 -3.74992 | overlap 473771 ATTGTAAATAGCGCT GGTGCAA TGC TTGCACC TCTTGTTTTAGTGTT TERM 553 474312 - 474285 - G 74 -7 -4.41348 | TCTTCGGCAAATAAA TTGGCAACGGTA GTTT TTCCGCTACCAA TACCACCCGTTAGAC Shewana3_0417 475369 - 474440 - | type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A TERM 554 475288 - 475271 - G 79 -6.9 -4.7173 | GACGACATTTAAAAA GCTGCCA ATAG TGGCGGC AAACACAAAACTTAA Shewana3_0418 476702 - 475431 - | type II secretion system protein TERM 555 476007 - 475976 - G 91 -5.2 -5.41143 | TAGCTCCCAAAAAAA TATACCAAGAGGAT TGTA AGCCTCTGGATATA TGAAGCACCAACTGA Shewana3_0419 478534 - 476825 - | type IV-A pilus assembly ATPase PilB TERM 556 477991 - 478007 + g 76 -5 -4.89477 | overlap 477986 CAATAGGGGCGTCAT CGCTGG CTTCT CCTGCG TTTTCTTCTTGGCGC TERM 557 478019 - 478057 + g 77 -12.5 -2.79098 | overlap 478016 TGCGTTTTCTTCTTG GCGCTTATCGGTATCGG TAACT TCGATACCGGCAAGTGC TGCTTCATCCATGCC Shewana3_0420 478842 - 480278 + | O-antigen polymerase TERM 558 480292 - 480305 + T 83 -9.5 -4.03413 | opp_overlap 480292 GATAAAAATAAAAAA GCCCC AAAA GGGGC TTTCTATAAAACAAT TERM 559 480305 - 480292 - T 100 -9.5 -5.98675 | opp_overlap 480292 GATAAAAATAAAAAA GCCCC AAAA GGGGC TTTCTATAAAACAAT Shewana3_0421 480753 - 480325 - | methylation site containing protein TERM 560 480898 - 480886 - R 80 -10.5 -3.44622 | CATTTTGATAAGGAA GGCCG AAA CGGCC ATCTCGCCTGTGGTA TERM 561 481345 - 481335 - R 71 -8.2 -3.45321 | opp_overlap 481333 481335 481339 ACCTAGAATCTATAA GGGC GCA GCCC GCTCTGCTTTTTCTA TERM 562 481339 - 481352 + r 70 -3.8 -4.89393 | opp_overlap 481335, overlap 481335 481333 AGAATCTATAAGGGC GCAG CCCGCT CTGC TTTTTCTAGCCTTTC Shewana3_0422 482239 - 481358 - | nicotinate-nucleotide pyrophosphorylase [carboxylating] TERM 563 482716 - 482736 + G 80 -3.2 -5.26875 | TTTCGCCGATTTAGC TGGGCTGG AGGTG TCGGCTCA TTTTTTAATTCGCCG Shewana3_0423 482516 - 483061 + | N-acetyl-anhydromuranmyl-L-alanine amidase Shewana3_0424 483246 - 484097 + | regulatory protein AmpE TERM 564 484399 - 484387 - f 80 -6.3 -4.87665 | opp_overlap 484387 GCTCACTCATAAAAA TTGGT AAG ACCAA TTTACAACGGAGCTG pdhR 484423 - 485175 + | transcriptional regulator PdhR TERM 565 486810 - 486790 - g 76 -4.7 -4.98917 | opp_overlap 486790, overlap 486782 486780 TAAAAGACAAGAAAA TTGGCAAAA ACA TCGTGCCAA TTATTCCTGACGAAG aceE 485256 - 487922 + | pyruvate dehydrogenase subunit E1 Shewana3_0427 487935 - 489941 + | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 566 489950 - 489970 + F 100 -9.7 -5.14682 | opp_overlap 489950 489947 TCTGTAAACAAATAA GGCTGCTCA ACT TGAGTGGCC TTTTGTTTATTGTGA Shewana3_0428 490091 - 491518 + | dihydrolipoamide dehydrogenase TERM 567 491540 - 491555 + F 100 -8.2 -5.4833 | opp_overlap 491540 ACCTTTCTTCAAGAA GCGTCC AATA GGGCGC TTTTTTATTGCCTAA TERM 568 492212 - 492222 + G 71 -5.4 -4.45068 | AATTATTGAGTTTGC CTGA TGG TCAG TTTCTTGTTGCGGGT TERM 569 492633 - 492650 + G 70 -3.3 -4.79352 | overlap 492634 TGATGGCTTGGCATT GCTGGCT TCGC AGCCGGA TTTTATTCTCGATAC TERM 570 493052 - 493070 + G 73 -6 -4.44797 | opp_overlap 493051 ATTTTTGGGAGCAAG GGCTGT TTGAGCC ACAGCC TTTTAATATTGATGG Shewana3_0429 491659 - 496122 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 571 496203 - 496239 + F 88 -9.5 -4.34444 | overlap 496205 496208 CGTTTGTCTATTGCA TTCACTTCGCTATTTCG CTG CGGAATAGCGAACTGTG TTTATCTTGTATTGC TERM 572 496205 - 496237 + F 100 -14.3 -3.75997 | overlap 496203 496208 TTTGTCTATTGCATT CACTTCGCTATTTCG CTG CGGAATAGCGAACTG TGTTTATCTTGTATT TERM 573 496208 - 496234 + F 100 -14.6 -2.65284 | overlap 496205 496203 GTCTATTGCATTCAC TTCGCTATTTCG CTG CGGAATAGCGAA CTGTGTTTATCTTGT TERM 574 497105 - 497076 - g 70 -4.3 -4.64992 | gap 1, opp_overlap 497076 GTGAAAAAAGACAAA CTGGAC-AGCAC GATTGCG GTGCTCGACCAG TTATCAAATTTTTTG Shewana3_0430 496353 - 498572 + | patatin TERM 575 498609 - 498578 - f 100 -16 -2.64274 | opp_overlap 498579, overlap 498565 498574 498583 AGCCTTCTAAATCGA TCGAAGGGCATAAC TAAG GTTATGCCCTTCGT TTTTCCTGCTGAACA TERM 576 498579 - 498608 + F 100 -19.5 -4.77036 | opp_overlap 498565 498578 498574 498583 GCCTTCTAAATCGAT CGAAGGGCATAAC TAAG GTTATGCCCTTCG TTTTTCCTGCTGAAC TERM 577 498604 - 498583 - f 95 -13.1 -3.11732 | opp_overlap 498579, overlap 498565 498578 498574 TCTAAATCGATCGAA GGGCATAAC TAAG GTTATGCCC TTCGTTTTTCCTGCT Shewana3_0431 498784 - 500826 + | peptidase M13 TERM 578 500832 - 500883 + T 100 -11.8 -3.79849 | opp_overlap 500842 500849, overlap 500836 500842 500849 AATCTGGTAATCCAT AGGATGAAAATGAAAAAGCCAGAC GGAT GTCTGGCTTTTTTATTTGCGTCAA TTGTTGCTGTGATTA TERM 579 500836 - 500879 + T 100 -15.6 -2.68142 | opp_overlap 500842 500849, overlap 500832 500842 500849 TGGTAATCCATAGGA TGAAAATGAAAAAGCCAGAC GGAT GTCTGGCTTTTTTATTTGCG TCAATTGTTGCTGTG TERM 580 500873 - 500842 - T 100 -13.2 -4.33274 | opp_overlap 500836 500832 500842 500849, overlap 500849 TCCATAGGATGAAAA TGAAAAAGCCAGAC GGAT GTCTGGCTTTTTTA TTTGCGTCAATTGTT TERM 581 500842 - 500873 + T 100 -15.4 -3.69734 | opp_overlap 500842 500849, overlap 500836 500832 500849 TCCATAGGATGAAAA TGAAAAAGCCAGAC GGAT GTCTGGCTTTTTTA TTTGCGTCAATTGTT TERM 582 500866 - 500849 - T 100 -11.3 -5.1166 | opp_overlap 500842 500836 500832 500849, overlap 500842 GATGAAAATGAAAAA GCCAGAC GGAT GTCTGGC TTTTTTATTTGCGTC TERM 583 500849 - 500866 + T 100 -11.3 -5.65927 | opp_overlap 500849 500842, overlap 500842 500836 500832 GATGAAAATGAAAAA GCCAGAC GGAT GTCTGGC TTTTTTATTTGCGTC Shewana3_0432 501552 - 500896 - | 2-deoxyglucose-6-phosphatase Shewana3_0433 501912 - 504584 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 584 504601 - 504630 + T 100 -12.3 -3.94811 | opp_overlap 504602 504608, overlap 504608 CGATTGATATGAAAA TGAAAAAGCCAGC GAAA GCTGGCTTTTTTG TTTGTGGATGCTATT TERM 585 504629 - 504602 - T 84 -11.4 -3.21034 | opp_overlap 504601 504608, overlap 504608 GATTGATATGAAAAT GAAAAAGCCAGC GAAA GCTGGCTTTTTT GTTTGTGGATGCTAT TERM 586 504623 - 504608 - T 100 -10.4 -5.1166 | opp_overlap 504601 504608, overlap 504602 TATGAAAATGAAAAA GCCAGC GAAA GCTGGC TTTTTTGTTTGTGGA TERM 587 504608 - 504623 + T 100 -10.4 -5.72622 | opp_overlap 504608 504602, overlap 504601 TATGAAAATGAAAAA GCCAGC GAAA GCTGGC TTTTTTGTTTGTGGA Shewana3_0434 505256 - 504759 - | anti-RNA polymerase sigma 70 factor TERM 588 505413 - 505386 - H 100 -18.6 -5.27938 | opp_overlap 505383 505380 ATGCGGAAATAAAAA GCCCAACGATAG AAAC CTATCGTTGGGC GAGTAATGTATATAG Shewana3_0435 505704 - 506768 + | uroporphyrinogen decarboxylase TERM 589 506773 - 506817 + F 90 -11 -3.93288 | gap 1, opp_overlap 506787, overlap 506775 506787 ACCATAAGTAATCGA TACAG-AAGAAGAAACGGACC CTAG GGTCCGTTTTTTATTGCTGTG TTTCCTTCGCTGAGC TERM 590 506775 - 506815 + F 89 -11.4 -3.55604 | gap 1, opp_overlap 506787, overlap 506773 506787 CATAAGTAATCGATA CAG-AAGAAGAAACGGACC CTAG GGTCCGTTTTTTATTGCTG TGTTTCCTTCGCTGA TERM 591 506787 - 506802 + F 100 -10.4 -5.5353 | opp_overlap 506787, overlap 506775 506773 ATACAGAAGAAGAAA CGGACC CTAG GGTCCG TTTTTTATTGCTGTG TERM 592 506802 - 506787 - f 100 -10.4 -4.55997 | opp_overlap 506787 506775 506773 ATACAGAAGAAGAAA CGGACC CTAG GGTCCG TTTTTTATTGCTGTG Shewana3_0436 507146 - 509716 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 593 510578 - 510564 - g 79 -7.8 -4.4715 | opp_overlap 510564 GTTTAATCGATAAAA TCGCCC GCA AGGCGA TTGCGTCGGGCCATT Shewana3_0437 509792 - 510595 + | short chain dehydrogenase Shewana3_0438 510823 - 510599 - | hypothetical protein TERM 594 510936 - 510913 - R 100 -11.8 -4.62069 | opp_overlap 510917 510920, overlap 510917 GCTTTAGGGCAAAAA TAAACCCCGC ATAG GCGAGGTTTA TGGGTGATTGGGCTT TERM 595 510932 - 510917 - R 100 -8.2 -4.87389 | opp_overlap 510917 510920, overlap 510913 TAGGGCAAAAATAAA CCCCGC ATAG GCGAGG TTTATGGGTGATTGG Shewana3_0439 514202 - 510981 - | hypothetical protein TERM 596 513196 - 513216 + g 81 -12.5 -3.31415 | opp_overlap 513197, overlap 513194 CGATAATTCGAGAGC AGCAGCGGG ATC CCCGCTGCC TTGGCTTTAGTGATG TERM 597 513215 - 513197 - G 86 -16 -2.65271 | opp_overlap 513196 513194 GATAATTCGAGAGCA GCAGCGGG ATC CCCGCTGC CTTGGCTTTAGTGAT TERM 598 514380 - 514330 - R 73 -8.8 -3.53811 | gap 2, opp_overlap 514337 514347, overlap 514308 514339 514347 TTGACGCTTGTCAAA TTTAAGTCAT--AAAAAAACCGGC GCATA GCCGGTTTTTTTAAATGAATTAAA GCTTAGCCCTGTTGT TERM 599 514369 - 514339 - R 100 -15.7 -2.58812 | opp_overlap 514337 514347, overlap 514330 514347 GTCAAATTTAAGTCA TAAAAAAACCGGC GCATA GCCGGTTTTTTTA AATGAATTAAAGCTT TERM 600 514347 - 514361 + r 100 -8.5 -5.47821 | opp_overlap 514339 514330 514347, overlap 514337 TAAGTCATAAAAAAA CCGGC GCATA GCCGG TTTTTTTAAATGAAT TERM 601 514361 - 514347 - R 100 -8.5 -5.66684 | opp_overlap 514347 514337, overlap 514339 514330 TAAGTCATAAAAAAA CCGGC GCATA GCCGG TTTTTTTAAATGAAT Shewana3_0440 515681 - 514383 - | phosphoribosylamine--glycine ligase TERM 602 515777 - 515753 - R 100 -16.5 -4.13995 | GTGCGATAAACGAAA CAGCCAGCACA TAG CGTGCTGGCTG TAGGTGGCATTAGTG purH 517385 - 515787 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 603 517629 - 517648 + H 77 -8.6 -3.99405 | CAAAATAGCCCTTGA CCTTGGAG TAGG CTCTAAGG TTTATACTCGCTTCA TERM 604 517853 - 517867 + G 91 -9.2 -4.77165 | overlap 517848 CTATACCGATGCCGA CGCGGC GCG GCTGCG TTTTATTCTGCGGGC zntR 517722 - 518195 + | zinc-responsive transcriptional regulator TERM 605 518431 - 518449 + G 70 -3 -4.8048 | opp_overlap 518435 CCGCTCAGGCGCGTC GAAAGCGG CAA CCACTTCC TTTTTAGTCTCGACA Shewana3_0443 518198 - 519691 + | permease TERM 606 519711 - 519730 + T 100 -9.3 -5.31275 | opp_overlap 519711 GACGCTAAATAAAAA TCCCCAG CAATGA CTGGGGA TTTTTTATGGTAAAG TERM 607 519730 - 519711 - T 100 -10 -5.28942 | opp_overlap 519711 GACGCTAAATAAAAA TCCCCAGC AATG ACTGGGGA TTTTTTATGGTAAAG TERM 608 519747 - 519794 + T 75 -7.1 -4.32951 | gap 1, opp_overlap 519753, overlap 519754 TTTTTATGGTAAAGC CTAATACGCATCGCTAGT-GGC AAATA GCTTACTAGCGATGCTTAGTCG TTTATTAGTTCGACT TERM 609 519754 - 519787 + T 95 -12.6 -3.37654 | gap 1, opp_overlap 519753, overlap 519747 GGTAAAGCCTAATAC GCATCGCTAGT-GGC AAATA GCTTACTAGCGATGC TTAGTCGTTTATTAG Shewana3_0444 520686 - 519799 - | band 7 protein TERM 610 519838 - 519826 - G 75 -9.1 -3.93695 | TTTAGCATCGATAAA GGGCA GGG TGCCC GTGGGGAGGACTGTG TERM 611 520770 - 520792 + H 76 -10.8 -2.57136 | opp_overlap 520764 520773 520775, overlap 520769 520765 520761 TTTTAATCATTTAGA TTACATTTTG CCG CAAAATGTAA CTTAATGGTTAATGC TERM 612 521180 - 521192 + G 90 -9.1 -4.66833 | overlap 521163 GTCGCTAGCCTTATT GGCTG GCT CAGCC TTTTTACCCTTAGCG Shewana3_0445 521033 - 521287 + | hypothetical protein Shewana3_0446 521291 - 521581 + | hypothetical protein TERM 613 522924 - 522947 + G 74 -11.6 -3.09272 | overlap 522922 CTTATGCCTTCTGGC GCGGCGCGGC TAGG GCGGCGCTGC TGATTTTACCCCTGT TERM 614 523114 - 523129 + G 71 -10.4 -3.05384 | overlap 523116 TTATGGATATCGACT CACGCG TCAG CGCGTG TTCAATGGCCCGCAG Shewana3_0447 521588 - 523207 + | response regulator receiver protein TERM 615 523213 - 523234 + T 100 -13 -5.10461 | opp_overlap 523213 AACTTCCTAACAAAA TGGGCGCC CTTATC GGCGCCCA TTTTTATTCACTCGG TERM 616 523234 - 523213 - T 100 -13 -4.64334 | opp_overlap 523213 AACTTCCTAACAAAA TGGGCGCC CTTATC GGCGCCCA TTTTTATTCACTCGG Shewana3_0448 524432 - 523260 - | major facilitator transporter TERM 617 523863 - 523837 - G 70 -10.9 -2.91735 | overlap 523841 TTAAGATCTGACAGA GCAATCGAGTG TTGCT CGCTCGATTGC GGCTGACCACGCTTA TERM 618 524095 - 524081 - G 79 -5.6 -5.01535 | overlap 524082 CGACAACCACAAAAA TCCCCG CCA CGGCGA GGCCTGCGATCAAAC Shewana3_0449 525695 - 524652 - | diguanylate cyclase with GAF sensor TERM 619 525863 - 525886 + H 71 -4.7 -4.63932 | gap 1, overlap 525868 CTGAGTTGAATATCG CTATGGGTGA TTTAC TCA-CCATAG TTTTGTTGCAAAGTA TERM 620 526220 - 526233 + H 70 -5.9 -4.38154 | opp_overlap 526220 TTTTATCTCGAAAAT GGCGT TTGT GCGCC TTTTGTCAGCAGTAT Shewana3_0451 526350 - 527750 + | anion transporter TERM 621 527799 - 527771 - T 100 -13.3 -3.71527 | opp_overlap 527776, overlap 527776 TCTGAACCATTCAAA TAAAATACCCAGC AAA GCTGGGTATTTTT ATGGGCGAAAGACTT TERM 622 527794 - 527776 - T 100 -13.2 -4.9138 | opp_overlap 527776, overlap 527771 ACCATTCAAATAAAA TACCCAGC AAA GCTGGGTA TTTTTATGGGCGAAA TERM 623 527776 - 527794 + T 100 -13.2 -4.82901 | opp_overlap 527776 527771 ACCATTCAAATAAAA TACCCAGC AAA GCTGGGTA TTTTTATGGGCGAAA Shewana3_0452 528236 - 527814 - | thioredoxin Shewana3_0453 528426 - 528761 + | peptidylprolyl isomerase, FKBP-type TERM 624 528772 - 528809 + F 71 -8.6 -3.43338 | gap 1, opp_overlap 528779, overlap 528780 ATTAAGCGTAACGGG TTGAAGATGGGGTCAGC ATTTG GCTGACTCC-TCTTGAA TTGCTTGCTCTCCCT TERM 625 528780 - 528802 + F 84 -11.3 -3.18134 | opp_overlap 528779, overlap 528772 TAACGGGTTGAAGAT GGGGTCAGC ATTTG GCTGACTCC TCTTGAATTGCTTGC TERM 626 528975 - 528955 - g 70 -4.7 -4.59342 | overlap 528951 TGCAGCACAAATAAA GCAACTTCA GGC CGAAATCGC CGAGCTTAAACGTGA TERM 627 529202 - 529184 - g 76 -8.2 -4.20136 | AGTTGGAAAAGTAAA CTTCATCC AGA GGATAAAG ACTGGGTAATCAAAG TERM 628 529774 - 529787 + G 73 -5.3 -4.65895 | GGCGATTAGCTTGAG TATCG GTAT CGATA TTTTTGAGTACGGCG Shewana3_0454 528926 - 529912 + | diguanylate cyclase with PAS/PAC sensor TERM 629 529918 - 529946 + T 95 -13.1 -3.1739 | opp_overlap 529906 529907, overlap 529917 TAACCGCTAATGGGC GGCGGACGCGC CGTGCTT GCGCGTCCTCC TTCCTACAGTGATAT Shewana3_0455 530360 - 529962 - | hypothetical protein TERM 630 530096 - 530080 - G 79 -9.3 -4.18058 | overlap 530081 AAGCACAGCTCAAAA TCCCCCG CCT CGGGGGT GCGCCCTAAGCGTAA TERM 631 530095 - 530081 - G 79 -12.8 -3.10112 | overlap 530080 AGCACAGCTCAAAAT CCCCCG CCT CGGGGG TGCGCCCTAAGCGTA Shewana3_0456 532427 - 530394 - | TRAP transporter, 4TM/12TM fusion protein TERM 632 532467 - 532495 + r 100 -16.2 -3.05816 | ACAGAGGGCGACGCA GCACTTGAGTGA CGCTA TCACTCAAGTGC TTAGGTGAAAAATGG Shewana3_0457 533491 - 532535 - | response regulator receiver protein TERM 633 533942 - 533923 - R 100 -8.6 -5.10461 | opp_overlap 533923 533936 GCGAGCCAATAAAAA GGGCTAAC CGCA GTTAACCC TTAATTGTCGATATT Shewana3_0458 534119 - 533985 - | hypothetical protein TERM 634 534026 - 534041 + g 73 -3.2 -4.90869 | TAGACGCATTTTTGG CGTGTT TTGC GGCACG TTTTTCCTTCATCGT Shewana3_0459 535913 - 534420 - | protein of unknown function DUF853, NPT hydrolase putative TERM 635 534593 - 534610 + g 89 -10.5 -4.35461 | GCTCCGCCTCTTGGG CGGCGGG CGTA CTCGCCG TTTTGGTGCTATTGG TERM 636 535051 - 535027 - G 73 -5 -4.73388 | overlap 535029 AATTGCGAGCAAAAA TACACTCCAA CGCCC TTGGAGCGAA TAAGCCGCATAATTT TERM 637 535049 - 535029 - G 71 -7.6 -3.98256 | overlap 535027 TTGCGAGCAAAAATA CACTCCAA CGCCC TTGGAGCG AATAAGCCGCATAAT Shewana3_0460 536107 - 536340 + | hypothetical protein Shewana3_0461 536352 - 536777 + | hypothetical protein TERM 638 537217 - 537231 + G 83 -5.6 -5.06414 | ATGCGGTATGGGGCA GGCGCA ATC TGGGCC TTTTTATTGCCCCGC TERM 639 537309 - 537296 - g 78 -3.7 -5.06451 | GAGGAGCTGAAAAAA CTCGG GGCG CCGGG AGATTTCGCCTTTGC Shewana3_0462 536825 - 537703 + | protein of unknown function, zinc metallopeptidase putative TERM 640 537895 - 537873 - g 82 -10.6 -3.90922 | AGCCTGGCGAAACAA TTCACGAAGC GCT GCTGCGTGAA TGCCAAGAGGAGTTG Shewana3_0463 537734 - 538141 + | NUDIX hydrolase Shewana3_0464 538771 - 538433 - | hypothetical protein Shewana3_0465 540026 - 539427 - | hypothetical protein TERM 641 541000 - 540989 - R 81 -7.2 -4.59773 | opp_overlap 540989 CGCCATCTGGAAAAA CGCG CATG CGCG TTTCCAAACCTATTA TERM 642 541410 - 541381 - R 100 -12.2 -5.88565 | TTTAGAATAAAAAAA TGCCGGACTACG GAAGAA CATAGCCCGGCA AAGGGAAGATAGCGT Shewana3_0467 543396 - 541429 - | hypothetical protein TERM 643 543526 - 543508 - R 100 -13.2 -3.31461 | TAGCGATCGGCAGAA GGGTTCAG GTG CTGAACCC TGAACAAGATATAAA Shewana3_0468 544560 - 543640 - | putative transcriptional regulator, CadC TERM 644 543891 - 543917 + g 71 -5.9 -4.33274 | gap 1, opp_overlap 543890, overlap 543892 CGTAGCTATACAAAC TCAGCAGTG-TG AGTG CATCGCTGCTGG TTTTGGTGGTGTAAA TERM 645 546085 - 546111 + G 71 -7.9 -3.98842 | gap 1, overlap 546088 GAAAAGGTGCTCGCA GGC-CGCGCCGC CTCT GCGGTGCGTGGC TTTATGGATCTTATC TERM 646 546088 - 546107 + G 77 -12.8 -2.71593 | overlap 546085 AAGGTGCTCGCAGGC CGCGCCGC CTCT GCGGTGCG TGGCTTTATGGATCT uvrD 544732 - 546900 + | DNA-dependent helicase II ubiA 547026 - 547886 + | 4-hydroxybenzoate octaprenyltransferase Shewana3_0471 548398 - 547973 - | hypothetical protein TERM 647 548257 - 548276 + g 76 -8.6 -4.18018 | opp_overlap 548257 CCTGTGAGCCAATGA CTGTGCCT TTAT AGGTACAG TTTTCGATGGCGGCA Shewana3_0472 550079 - 548466 - | IS4 family transposase TERM 648 549569 - 549582 + g 70 -8.1 -3.70902 | TTTCACAGATAAGCT CCAGG ATAA CCTGG TTTAGCTCTGGCCGA Shewana3_0473 550599 - 550183 - | hypothetical protein Shewana3_0474 550973 - 552034 + | 2-nitropropane dioxygenase, NPD Shewana3_0475 552181 - 553326 + | hypothetical protein TERM 649 553379 - 553422 + F 77 -8.5 -3.96148 | opp_overlap 553383, overlap 553383 TGAATCGATTCTGCT CAAATAGGCTTATATTTTA CATGGC TAAAATATAAGCCTATTCA TTTATACTGGCGGCC TERM 650 553418 - 553383 - f 100 -13.7 -3.53811 | opp_overlap 553379 553383 TCGATTCTGCTCAAA TAGGCTTATATTTTA CATGGC TAAAATATAAGCCTA TTCATTTATACTGGC TERM 651 553383 - 553418 + F 100 -13.7 -3.63228 | opp_overlap 553383, overlap 553379 TCGATTCTGCTCAAA TAGGCTTATATTTTA CATGGC TAAAATATAAGCCTA TTCATTTATACTGGC TERM 652 553710 - 553697 - g 73 -3.1 -5.01732 | AACCTCCTTAAAAAA CATCG CGGG CGATA AACCGATTTACCTTA Shewana3_0476 553569 - 554489 + | redoxin domain-containing protein TERM 653 554504 - 554526 + F 100 -14.2 -3.57144 | opp_overlap 554498 GGGATTCAACCATTT GGCCTTCGAG ACA TTCGAAGGCC TTTGGCGATGCCAGC TERM 654 554647 - 554663 + F 83 -8.7 -4.16921 | AAAGGCTGGTTGTTG CTTGGCA CTC TGCCGAG TTTTCCACCTTGTTG Shewana3_0477 554705 - 555811 + | hypothetical protein Shewana3_0478 556098 - 555808 - | putative mitomycin resistance protein Shewana3_0479 557217 - 556165 - | response regulator receiver modulated metal dependent phosphohydrolase TERM 655 556499 - 556556 + g 85 -12.7 -3.67175 | gap 1 GGGTCATCGTCATCA CCGAGGATCTGCG-CGCCAAAGGAAGCG TGT TGCTGCATTTGGCGTCGCTCATCATCGG TTAATTTTCCCGGCT TERM 656 560191 - 560212 + G 71 -6.5 -4.1891 | overlap 560194 GGTCACGCTTAAGCG CATCGAGCT CAAT GGCTCGCTG TTTGTATTGGGCACC Shewana3_0480 557774 - 562834 + | putative PAS/PAC sensor protein TERM 657 563471 - 563447 - g 74 -11.5 -3.12351 | opp_overlap 563445 TGTTGTTAGATGTAA TGATGCCCG AAATGGA CGGGCATCA AGTGTTACAAGCCTT TERM 658 564126 - 564099 - g 79 -7 -4.74801 | gap 1 CAACCTGATTAAAAA TGCCTTCGAGGCG GCG CGCC-CTAAGACA AAAGTGGCAATTTCG TERM 659 564195 - 564183 - g 79 -9.1 -4.18494 | overlap 564185 GATCGCTATCGAAAA CACGG GCG CCGTG CCCGCCGATATCCGT TERM 660 564199 - 564185 - g 70 -8.5 -3.69216 | overlap 564183 TCGCTATCGAAAACA CGGGC GCCGT GCCCG CCGATATCCGTGAAC Shewana3_0481 562825 - 564396 + | response regulator receiver protein TERM 661 564433 - 564414 - T 100 -13.6 -5.28561 | AAGACACAACAAAAA GGGCAAGC CTTA GCTTGCCC TTAGCGCGTTAGAGT Shewana3_0482 566502 - 564442 - | peptidase S9 prolyl oligopeptidase TERM 662 566372 - 566404 + g 81 -12.7 -3.23853 | opp_overlap 566367, overlap 566371 ATGGGAATGAGCGGC GCCTCGGTTTGCTGC GTC GCGGCAACTTGAGGC TGTTCGTTGCGAACA Shewana3_0483 566660 - 567178 + | hypothetical protein Shewana3_0484 567175 - 567408 + | XRE family transcriptional regulator TERM 663 567411 - 567450 + T 82 -8.6 -4.28651 | gap 1, opp_overlap 567413 567415 567416, overlap 567412 CACGTCGGACTAAGG AAG-AGGCCTAGGCTGCAT GCT GTGCAGCCTAGGCTTGCGG TTTTACGCTTTTACT TERM 664 567412 - 567449 + T 86 -12.1 -3.16106 | gap 1, opp_overlap 567413 567415 567416, overlap 567411 ACGTCGGACTAAGGA AG-AGGCCTAGGCTGCAT GCT GTGCAGCCTAGGCTTGCG GTTTTACGCTTTTAC TERM 665 567447 - 567413 - T 100 -12.9 -3.39895 | opp_overlap 567412 567411, overlap 567415 567416 CGTCGGACTAAGGAA GAGGCCTAGGCTGCA TGCTG TGCAGCCTAGGCTTG CGGTTTTACGCTTTT TERM 666 567445 - 567415 - T 100 -15.5 -3.27029 | opp_overlap 567412 567411, overlap 567413 567416 TCGGACTAAGGAAGA GGCCTAGGCTGCA TGCTG TGCAGCCTAGGCT TGCGGTTTTACGCTT TERM 667 567444 - 567416 - T 100 -19 -2.55896 | opp_overlap 567412 567411, overlap 567415 567413 CGGACTAAGGAAGAG GCCTAGGCTGCA TGCTG TGCAGCCTAGGC TTGCGGTTTTACGCT Shewana3_0485 568031 - 567453 - | hypothetical protein TERM 668 568187 - 568157 - R 70 -3.9 -4.78149 | overlap 568159 GCGATAAGCTAAAAA TACCCGCTGCC AAATCGGGG AGCAGCGGGCT TCGGCAAAGATTTAG TERM 669 568185 - 568159 - R 80 -8.7 -4.00465 | overlap 568157 GATAAGCTAAAAATA CCCGCTGCC AAATCGGGG AGCAGCGGG CTTCGGCAAAGATTT Shewana3_0486 568871 - 568287 - | redoxin domain-containing protein Shewana3_0487 569340 - 568921 - | cytochrome C biogenesis protein Shewana3_0488 571376 - 569337 - | cytochrome c-type biogenesis protein CcmF TERM 670 569849 - 569861 + g 74 -7.7 -4.19276 | CGCCAAAATGACCGA CTAGC ATG GCTAG TTTTGCGCGTTTTGA TERM 671 570957 - 570945 - G 70 -9.1 -3.5002 | overlap 570941 GCCAAGGATAACTAA GGCGA GAA TCGCC AGTAGCCGTGCAAAG TERM 672 571914 - 571930 + G 73 -3 -4.94962 | opp_overlap 571914, overlap 571909 GATGGAAATCCAAAG TAGCAT TAGGC GTGCTA TTTTGTTTAGGTTCT TERM 673 572109 - 572084 - g 72 -3.9 -4.75776 | opp_overlap 572084 AACTTAATGGAAAAA TCCCGCGGTGT GAAA ACATTGCAGGA TTATATTGTTCAAGA Shewana3_0489 571892 - 574021 + | cytochrome c, putative TERM 674 574310 - 574320 + G 80 -2.4 -5.50499 | GGCGGAAGGTTTTAT CCCC GGA GCGG TTTTTTTCAATGTGC Shewana3_0490 574080 - 574523 + | rhodanese domain-containing protein Shewana3_0491 574617 - 575396 + | FKBP-type peptidyl-prolyl isomerase domain-containing protein Shewana3_0492 575461 - 576135 + | formate-dependent nitrite reductase, NrfG protein Shewana3_0493 576222 - 576929 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_0494 576932 - 577879 + | polysulphide reductase, NrfD Shewana3_0496 578480 - 579754 + | periplasmic copper-binding TERM 675 580149 - 580137 - g 73 -10.5 -3.27525 | overlap 580132 TTTTGCCAAACTTAA GGGGG TAG CCCCC AAGCGCGTATCCATT TERM 676 580372 - 580343 - g 76 -6.5 -4.50976 | opp_overlap 580343 580352, overlap 580356 TTTTATATCAGAAAA TGGCGCAAC TGAAGGCGCAGG GTTGCGCCA TCATTATCAGTACCC TERM 677 580352 - 580375 + G 77 -11 -3.35679 | opp_overlap 580343 580356, overlap 580343 AGAAAATGGCGCAAC TGAAGGCGCA GGGT TGCGCCATCA TTATCAGTACCCACG TERM 678 580371 - 580356 - g 71 -10.4 -3.17571 | opp_overlap 580343 580352, overlap 580343 AATGGCGCAACTGAA GGCGCA GGGT TGCGCC ATCATTATCAGTACC Shewana3_0497 579751 - 580797 + | ABC transporter related Shewana3_0498 580794 - 581681 + | copper ABC transporter, permease protein Shewana3_0499 581895 - 583178 + | transcriptional regulator TERM 679 583192 - 583221 + F 100 -13.7 -3.10597 | opp_overlap 583197, overlap 583192 583213 AACCTAGTGTGTTAT GCAAACAGCCGAT AGCC ATCGGCTGTTTGG CTTTTAGCTAGCAGC TERM 680 583192 - 583222 + F 100 -13.5 -4.18018 | gap 1, opp_overlap 583197, overlap 583192 583213 AACCTAGTGTGTTAT G-CAAACAGCCGAT AGCC ATCGGCTGTTTGGC TTTTAGCTAGCAGCA TERM 681 583216 - 583197 - f 93 -12.2 -3.64822 | opp_overlap 583192 583192 583213 AGTGTGTTATGCAAA CAGCCGAT AGCC ATCGGCTG TTTGGCTTTTAGCTA Shewana3_0500 583428 - 585560 + | peptidase M13 TERM 682 585577 - 585594 + T 100 -11.3 -5.45652 | opp_overlap 585577 TTAAGTCGATAAAAA GGGAACC CTAG GGTTCCC TTTTTTGTTAGCGAT TERM 683 585594 - 585577 - T 100 -11.3 -4.87786 | opp_overlap 585577 TTAAGTCGATAAAAA GGGAACC CTAG GGTTCCC TTTTTTGTTAGCGAT Shewana3_0501 587995 - 585602 - | fatty acid cistrans isomerase TERM 684 589223 - 589191 - g 86 -9.2 -4.57073 | gap 1 TAGTGGCGCGAAAAA GCGTATTCGCCCTGC CAAC GCAGAG-GACTACGC TGGCCATGGCTCTCA Shewana3_0502 588256 - 593202 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 685 593215 - 593255 + F 100 -13.6 -3.39353 | gap 1, opp_overlap 593227, overlap 593216 593227 TAATTAGCTTCATTC TCCAGTCAAAAAGAGGGAC GCAT GTCCCTCTTTTT-ATTGGG TTAATATCTTCCTGT TERM 686 593216 - 593254 + F 100 -14.9 -2.62889 | gap 1, opp_overlap 593227, overlap 593215 593227 AATTAGCTTCATTCT CCAGTCAAAAAGAGGGAC GCAT GTCCCTCTTTTT-ATTGG GTTAATATCTTCCTG TERM 687 593227 - 593244 + F 100 -11.3 -5.13741 | opp_overlap 593227, overlap 593216 593215 TTCTCCAGTCAAAAA GAGGGAC GCAT GTCCCTC TTTTTATTGGGTTAA TERM 688 593244 - 593227 - f 100 -11.3 -4.65895 | opp_overlap 593227 593216 593215 TTCTCCAGTCAAAAA GAGGGAC GCAT GTCCCTC TTTTTATTGGGTTAA Shewana3_0503 593352 - 593978 + | flavoprotein oxygenase TERM 689 593988 - 594004 + F 100 -9.5 -4.8143 | GTGTAGGTGGTGGTA CTCAAAC TTC GTTTGAG TTTTTGACTTATTAG TERM 690 594101 - 594079 - f 82 -7.6 -4.48685 | overlap 594081 AAAAGAAAAATCAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAGGAGGACT TERM 691 594861 - 594846 - f 79 -3.2 -5.29716 | overlap 594856 GTAATAGAACAAAAA GTATGG AAAA CCATGC AGAATGGAATTTCGA Shewana3_0504 595234 - 596148 + | hypothetical protein TERM 692 596216 - 596180 - T 81 -11.8 -2.52543 | gap 1, opp_overlap 596187, overlap 596187 AGGGGCGGCAAGGGA GATCCAAGAGGGGAT TGCTGTTG ATCCCCTCTTGG-TC GGGTGTGGGTTGAAG TERM 693 596187 - 596210 + T 72 -9.6 -3.17763 | opp_overlap 596187 596180 GCAAGGGAGATCCAA GAGGGGATTG CTGT TGATCCCCTC TTGGTCGGGTGTGGG TERM 694 596358 - 596341 - T 100 -11.3 -5.19275 | opp_overlap 596341 ACGTATAAAACAAAA CCCCAGT GAAA ACTGGGG TTTATTGTTTGAGTC TERM 695 596341 - 596358 + T 100 -11.3 -4.58585 | opp_overlap 596341 ACGTATAAAACAAAA CCCCAGT GAAA ACTGGGG TTTATTGTTTGAGTC fre 597114 - 596416 - | FMN reductase TERM 696 597166 - 597179 + r 76 -9.5 -3.43553 | opp_overlap 597166, overlap 597164 TAGGTGTCACATTAA GGCCG TTGG CGGCC TATTCTCTTGGCTTA TERM 697 597179 - 597166 - R 74 -9.5 -3.2614 | opp_overlap 597166 597164 TAGGTGTCACATTAA GGCCG TTGG CGGCC TATTCTCTTGGCTTA Shewana3_0506 598706 - 597225 - | 3-octaprenyl-4hydroxybenzoate decarboxylase TERM 698 599103 - 599086 - g 72 -8.5 -3.86935 | opp_overlap 599097, overlap 599098 CAATCACTACAATAA TCACCAT AAAC ATGGTGA TAGCCATCGCCACTA Shewana3_0507 598865 - 599635 + | hypothetical protein TERM 699 599657 - 599679 + F 100 -6.9 -5.7946 | overlap 599659 TTTAGGCCTTATCGA CGGGAGCCC CGAGT GGGCTCCTA TTTTTTTCTTAGCCA TERM 700 599659 - 599677 + F 100 -11.7 -4.54306 | overlap 599657 TAGGCCTTATCGACG GGAGCCC CGAGT GGGCTCC TATTTTTTTCTTAGC Shewana3_0508 599727 - 600944 + | major facilitator transporter TERM 701 600961 - 601000 + T 84 -10.7 -3.62572 | opp_overlap 600963, overlap 600959 600963 GGATTGATTCAAAAG AATGGGCGGCTAAGGCA ACTTGA TGCTCTGGCCGCCCATG TGTTTATCATTAACT TERM 702 600963 - 600998 + T 100 -13.3 -3.38415 | opp_overlap 600963, overlap 600961 600959 ATTGATTCAAAAGAA TGGGCGGCTAAGGCA ACTTGA TGCTCTGGCCGCCCA TGTGTTTATCATTAA TERM 703 600998 - 600963 - T 93 -11.1 -4.22214 | opp_overlap 600963 600961 600959 ATTGATTCAAAAGAA TGGGCGGCTAAGGCA ACTTGA TGCTCTGGCCGCCCA TGTGTTTATCATTAA Shewana3_0509 601708 - 601031 - | short-chain dehydrogenase/reductase SDR TERM 704 601078 - 601090 + g 74 -7.7 -4.13767 | AACCATGTTCGGTGG CAAGC AAC GCTTG TTTTAGCATGCCAGC TERM 705 601472 - 601455 - G 76 -11.3 -3.33815 | AGCGTGCCGAAGTAA CCACTGC CAGC GCAGTGG ATAACCGTGTTGGGG Shewana3_0510 602191 - 601736 - | biotin carboxyl carrier protein Shewana3_0511 602659 - 602225 - | 3-dehydroquinate dehydratase Shewana3_0512 603174 - 602761 - | hypothetical protein Shewana3_0513 603323 - 603688 + | hypothetical protein Shewana3_0514 603725 - 603928 + | hypothetical protein Shewana3_0515 604093 - 604542 + | hypothetical protein Shewana3_0516 604751 - 606121 + | outer membrane efflux family protein, putative Shewana3_0517 606137 - 607417 + | RND family efflux transporter MFP subunit TERM 706 609225 - 609210 - g 70 -9 -3.59979 | opp_overlap 609222 GCTTGCTAGGCCAAA GCTGGT GATG ACCAGC GCGCTGCTGATGTTT Shewana3_0518 607495 - 610707 + | CzcA family heavy metal efflux protein Shewana3_0519 610837 - 611160 + | antibiotic biosynthesis monooxygenase TERM 707 611208 - 611181 - T 100 -11.4 -4.96848 | opp_overlap 611186, overlap 611186 GCGCTTATATAAAAA CAAAACCCATCG AAGT CGATGGGTTTTT TATTGCAATCAATCA TERM 708 611203 - 611186 - T 100 -11.3 -5.38839 | opp_overlap 611186, overlap 611181 TATATAAAAACAAAA CCCATCG AAGT CGATGGG TTTTTTATTGCAATC TERM 709 611186 - 611203 + T 100 -11.3 -5.46657 | opp_overlap 611186 611181 TATATAAAAACAAAA CCCATCG AAGT CGATGGG TTTTTTATTGCAATC mscL 611653 - 611243 - | large-conductance mechanosensitive channel TERM 710 611391 - 611380 - G 78 -5.8 -4.87786 | TTAAGCCCATAAAAA TCGC GAAG GCGA TAATGGTAAAGTCGA Shewana3_0521 612791 - 611838 - | LysR family transcriptional regulator TERM 711 613198 - 613184 - g 70 -8.6 -3.7108 | AGGCCGATATGCAAA CCTTAG CCG CTAAGG TGGAATTGCAGCACG Shewana3_0522 612889 - 613944 + | secretion protein HlyD family protein TERM 712 614621 - 614605 - g 74 -4.3 -4.84529 | opp_overlap 614605 GGACAAACTGAAAAA TGCCGAC TTA GCGGGCA TTGTCACTATGGCGC TERM 713 615014 - 615025 + G 100 -7.2 -5.56264 | GACGGGCGTTATTTA GCCG CCTT CGGC TTTTTTATGTTTGCC Shewana3_0523 613958 - 615565 + | EmrB/QacA family drug resistance transporter TERM 714 615602 - 615630 + F 100 -14 -5.4251 | overlap 615591 615590 CAATGCGTAACCCTT GCGCCTTAATTC CCCTA GGATTAAGGCGC TTTTTTATGTGTAGA Shewana3_0524 615692 - 616165 + | GCN5-related N-acetyltransferase Shewana3_0525 616209 - 616535 + | antibiotic biosynthesis monooxygenase TERM 715 617746 - 617775 + G 73 -5.7 -4.58585 | opp_overlap 617736 CATTATGCGAATTGG CGGCAATGCGC CCATAAAA GTGGATTGCCG TTTGTTATTTGCCTC Shewana3_0526 616916 - 618280 + | sigma-54 dependent trancsriptional regulator Shewana3_0527 618531 - 620195 + | hypothetical protein TERM 716 620216 - 620245 + T 100 -13.7 -3.8572 | opp_overlap 620222, overlap 620222 TGAGTTGTGTATTAG CAAAAAGGGCCGT CATT ACGGCCCTTTTTA TTTGCTCATATTATC TERM 717 620222 - 620239 + T 100 -12.7 -5.34309 | opp_overlap 620222, overlap 620216 GTGTATTAGCAAAAA GGGCCGT CATT ACGGCCC TTTTTATTTGCTCAT TERM 718 620239 - 620222 - T 100 -12.7 -4.77036 | opp_overlap 620222 620216 GTGTATTAGCAAAAA GGGCCGT CATT ACGGCCC TTTTTATTTGCTCAT Shewana3_0528 622217 - 620256 - | peptidase M11, gametolysin TERM 719 622452 - 622440 - H 70 -7.7 -3.66166 | overlap 622438 TGTTCAAAAAATATA CTGGT TAA ACCAG ACTGAATTTTGACTG TERM 720 623004 - 623039 + H 100 -16.4 -3.49475 | gap 1, opp_overlap 623011, overlap 623005 TGACTAACTGTTGTA G-TAGGAATCAGTTCCC TTT GGGAGCTGATTCCTATC TTGTATAAAAATGGA TERM 721 623005 - 623037 + H 100 -20.1 -3.32202 | opp_overlap 623011, overlap 623004 GACTAACTGTTGTAG TAGGAATCAGTTCCC TTT GGGAGCTGATTCCTA TCTTGTATAAAAATG TERM 722 623031 - 623011 - H 74 -9.7 -3.21099 | opp_overlap 623005 623004 CTGTTGTAGTAGGAA TCAGTTCCC TTT GGGAGCTGA TTCCTATCTTGTATA TERM 723 623776 - 623766 - g 80 -2.6 -5.37593 | overlap 623759 TCTGAAATTAAAAAA TTTA CTA TAAA AAGAGTCAATGCCAG Shewana3_0529 623259 - 624098 + | hypothetical protein Shewana3_0530 625199 - 624333 - | LysR family transcriptional regulator TERM 724 624894 - 624871 - G 74 -3.9 -5.03314 | opp_overlap 624885 GTTAGCTGGAAAAAA CTGGCTAAC CGCGGC ATTAACCAG CGCATGGTGAGTGTG TERM 725 625193 - 625206 + g 70 -2.3 -4.92363 | AGAATGCTTTTAAGT GTCTC ATAT GTGAC TTTTTCTCACTGTTT Shewana3_0531 625299 - 625910 + | lysine exporter protein LysE/YggA Shewana3_0532 626411 - 626755 + | ArsR family transcriptional regulator Shewana3_0533 626796 - 627815 + | bile acid:sodium symporter TERM 726 627856 - 627845 - f 71 -3 -4.94672 | overlap 627836 AAATAATATTAAAAA TCAA TAAA TTGA AAGTTAACTAGGTAG Shewana3_0534 627881 - 628894 + | glyceraldehyde-3-phosphate dehydrogenase TERM 727 629595 - 629608 + G 84 -4.5 -5.27335 | gap 1, overlap 629596 GCGTGAATATTCTCT C-GGCG GCG CGCCTG TTTTTGTTTGCCGCA TERM 728 629596 - 629606 + G 76 -8.2 -4.27026 | overlap 629595 CGTGAATATTCTCTC GGCG GCG CGCC TGTTTTTGTTTGCCG TERM 729 629690 - 629701 + G 82 -7.2 -4.61231 | overlap 629689 GACTGGGATCATTGG GCCG TGGG CGGC TTTTTGGCGCTCTGG Shewana3_0535 628904 - 630172 + | major facilitator transporter Shewana3_0536 630177 - 631040 + | hypothetical protein TERM 730 631866 - 631854 - g 70 -9.1 -3.64703 | GCTTGCCGAGTTAAA GGCGA TTT TCGCC AAGGCGGTGACCGAG Shewana3_0537 631159 - 632601 + | aspartate kinase Shewana3_0538 632683 - 633102 + | hypothetical protein TERM 731 633166 - 633113 - T 71 -4.9 -4.62872 | gap 3, opp_overlap 633114 633117 633118 633131, overlap 633114 633126 633131 ACTAAGCGTTAAAAA CTCAGTCTTAACATTGAAGGCTCACA TTGTT TGTGAGCCTTCAATGT---GAATGGG ATTTTAATCTGAGTT TERM 732 633114 - 633167 + T 82 -8.4 -4.36931 | gap 1, opp_overlap 633113 633114 633126 633131, overlap 633117 633118 633131 CTAAGCGTTAAAAAC TCAGTCTTAACATTGAAGGCTCACA TTGTT TGTGAGCCTTCAATGTGAATGG-GA TTTTAATCTGAGTTA TERM 733 633117 - 633166 + T 79 -11 -3.21436 | gap 1, opp_overlap 633113 633114 633126 633131, overlap 633114 633118 633131 AGCGTTAAAAACTCA GTC-TTAACATTGAAGGCTCACA TTGTT TGTGAGCCTTCAATGTGAATGGG ATTTTAATCTGAGTT TERM 734 633118 - 633165 + T 100 -14.5 -2.52138 | gap 1, opp_overlap 633113 633114 633126 633131, overlap 633117 633114 633131 GCGTTAAAAACTCAG TC-TTAACATTGAAGGCTCACA TTGTT TGTGAGCCTTCAATGTGAATGG GATTTTAATCTGAGT TERM 735 633156 - 633126 - T 100 -17.1 -3.0464 | opp_overlap 633118 633117 633114 633131, overlap 633113 633114 633131 AACTCAGTCTTAACA TTGAAGGCTCACA TTGTT TGTGAGCCTTCAA TGTGAATGGGATTTT TERM 736 633131 - 633151 + T 79 -11.2 -3.1355 | opp_overlap 633126 633113 633114 633131, overlap 633118 633117 633114 AGTCTTAACATTGAA GGCTCACA TTGTT TGTGAGCC TTCAATGTGAATGGG TERM 737 633151 - 633131 - T 79 -11.2 -3.18728 | opp_overlap 633131 633118 633117 633114, overlap 633126 633113 633114 AGTCTTAACATTGAA GGCTCACA TTGTT TGTGAGCC TTCAATGTGAATGGG Shewana3_0539 634525 - 633170 - | hypothetical protein Shewana3_0540 634806 - 635768 + | hypothetical protein Shewana3_0541 636049 - 635873 - | hypothetical protein TERM 738 636144 - 636109 - H 75 -7.1 -4.3739 | opp_overlap 636117 636143, overlap 636117 GAGTGTGGCAGAAAA GCAAAAAATTTTACG ACTGAA CGTAAAATTTTCTTC CCGTAAAGCGGGGTA TERM 739 636117 - 636136 + H 73 -5.1 -4.65916 | opp_overlap 636117 636109 CAGAAAAGCAAAAAA TTTTACG ACTGAA CGTAAAA TTTTCTTCCCGTAAA TERM 740 636136 - 636117 - H 87 -5.1 -5.50313 | opp_overlap 636117, overlap 636109 CAGAAAAGCAAAAAA TTTTACG ACTGAA CGTAAAA TTTTCTTCCCGTAAA TERM 741 636205 - 636220 + H 86 -7.6 -4.61566 | opp_overlap 636214 CTATTTTAGTACTCA TTCAGC AACC GCTGAA TTTTGTGATTTAGCG Shewana3_0542 636365 - 638524 + | multi-sensor signal transduction histidine kinase Shewana3_0543 638521 - 638955 + | response regulator receiver protein Shewana3_0544 638965 - 640683 + | response regulator receiver modulated diguanylate cyclase/phosphodiesterase TERM 742 641248 - 641260 + G 73 -10.5 -3.28984 | TTTGATTAACATGGT GGGCG GCG CGCCC TTAGTGATTAAGTTG TERM 743 641404 - 641418 + G 73 -6.4 -4.46212 | overlap 641406 TAAGGAATCCAACGG TAGCGA CAT TCGCTG TTTTGTGGTCGGCGA Shewana3_0545 640850 - 641755 + | alpha-L-glutamate ligase TERM 744 641763 - 641781 + T 100 -16 -5.50723 | opp_overlap 641763 TTGCCTAATAAAAAA CGCCGCGA TTA TCGCGGCG TTTTTGTTTTACTCG TERM 745 641781 - 641763 - T 100 -16 -5.4505 | opp_overlap 641763 TTGCCTAATAAAAAA CGCCGCGA TTA TCGCGGCG TTTTTGTTTTACTCG Shewana3_0546 642510 - 641818 - | hypothetical protein TERM 746 642775 - 642758 - R 100 -6.2 -5.75342 | opp_overlap 642758 GCTGGGCAAAAAAAA CGCCCC ACAAAG GAGGCG TTTTATAGAATGATG Shewana3_0547 643072 - 642800 - | histone family protein DNA-binding protein Shewana3_0549 644555 - 644091 - | hypothetical protein Shewana3_0550 644599 - 645108 + | hypothetical protein Shewana3_0551 645429 - 645115 - | hypothetical protein Shewana3_0552 645887 - 645579 - | hypothetical protein Shewana3_0553 646160 - 646684 + | hypothetical protein Shewana3_0554 648454 - 646700 - | diguanylate cyclase/phosphodiesterase TERM 747 646742 - 646774 + g 100 -17.2 -5.53288 | opp_overlap 646744 646751 GTCTCTCTCTTCTAA CAGGCAAAATCCGT TACTC GCGGATTTTGCCTG TTTTTTTGCCTTGGC TERM 748 646772 - 646744 - G 80 -13.3 -3.01712 | opp_overlap 646742, overlap 646751 CTCTCTCTTCTAACA GGCAAAATCCG TTACTCG CGGATTTTGCC TGTTTTTTTGCCTTG TERM 749 648407 - 648391 - G 79 -7.9 -4.57837 | opp_overlap 648391, overlap 648393 ATATGGGCTGAAAAA GTGGGCT GAT AGCCCCC TTTGCGATTATCTTA TERM 750 648559 - 648583 + r 86 -8.7 -4.25681 | opp_overlap 648559 GGAAATGAGAGCAAA CGCTGAAAT TGATGAT ATTTCAGCG TTTATTGAATTAGCT TERM 751 648583 - 648559 - R 80 -8.7 -3.91087 | opp_overlap 648559 GGAAATGAGAGCAAA CGCTGAAAT TGATGAT ATTTCAGCG TTTATTGAATTAGCT Shewana3_0555 648901 - 648593 - | hypothetical protein TERM 752 649101 - 649113 + G 93 -9.1 -4.95155 | TGGGCTCGATTCATA TCGGC CGT GCCGA TTTTTATCCTATGCC Shewana3_0556 648950 - 649846 + | GumN family protein TERM 753 649949 - 649978 + T 100 -18.1 -3.56099 | opp_overlap 649949 649952 649956, overlap 649952 649956 CATCTGGTGATGAAA CAATAAAGGACGC CTTG GCGTCCTTTATTG TTTCGCGAGCTTATG TERM 754 649978 - 649949 - T 100 -18.1 -3.72893 | opp_overlap 649949 649952 649956, overlap 649952 649956 CATCTGGTGATGAAA CAATAAAGGACGC CTTG GCGTCCTTTATTG TTTCGCGAGCTTATG TERM 755 649975 - 649952 - T 100 -14 -4.00042 | opp_overlap 649949 649952 649956, overlap 649949 649956 CTGGTGATGAAACAA TAAAGGACGC CTTG GCGTCCTTTA TTGTTTCGCGAGCTT TERM 756 649952 - 649975 + T 100 -14 -3.91488 | opp_overlap 649952 649949 649956, overlap 649949 649956 CTGGTGATGAAACAA TAAAGGACGC CTTG GCGTCCTTTA TTGTTTCGCGAGCTT TERM 757 649971 - 649956 - T 100 -10.4 -4.60258 | opp_overlap 649952 649949 649956, overlap 649952 649949 TGATGAAACAATAAA GGACGC CTTG GCGTCC TTTATTGTTTCGCGA TERM 758 649956 - 649971 + T 100 -10.4 -4.56978 | opp_overlap 649956 649952 649949, overlap 649952 649949 TGATGAAACAATAAA GGACGC CTTG GCGTCC TTTATTGTTTCGCGA Shewana3_0557 650774 - 649989 - | methyltransferase type 11 TERM 759 650082 - 650123 + g 100 -10.3 -5.06451 | gap 1, opp_overlap 650053 GGAATACTCGAGCTC CATC-GTCAGCAGCTTTTGA TAG TCAAAATCCGCTGGCTGATG TTTTTTCAAATAGTC TERM 760 650304 - 650318 + g 87 -10 -4.30987 | opp_overlap 650302 CGACACTAATGCATG GAAGCG CAT CGCTTC TTTATTGTAAAACAT TERM 761 650355 - 650345 - G 70 -8.2 -3.71075 | overlap 650343 ACATCAGCGAAAACA GCCC ATT GGGC TTAAGCATGGTCAGC Shewana3_0558 651139 - 652002 + | dehydratase TERM 762 652032 - 652016 - T 100 -15.1 -3.2396 | opp_overlap 652016 AAGCATGATGAGTAA CGGCGCC TAA GGCGCCG TTTTTGTTGGTGTTG TERM 763 652016 - 652032 + T 100 -15.1 -5.19251 | opp_overlap 652016 AAGCATGATGAGTAA CGGCGCC TAA GGCGCCG TTTTTGTTGGTGTTG Shewana3_0559 652947 - 652057 - | aldo/keto reductase TERM 764 652131 - 652142 + g 87 -7.2 -4.91109 | overlap 652130 652129 GGGTGAGTGACTGTG CGGC CACC GCCG TTTTTATCCTCGCGA Shewana3_0560 653188 - 654900 + | formate--tetrahydrofolate ligase TERM 765 654925 - 654955 + T 100 -15.6 -4.00526 | opp_overlap 654930, overlap 654930 AGTTCGAATATCATG AAAAAGGCGCAATC TAG GATTGCGCCTTTTG TTTACTTCTCGCCTT TERM 766 654950 - 654930 - T 100 -15.5 -4.8083 | opp_overlap 654925 654930 GAATATCATGAAAAA GGCGCAATC TAG GATTGCGCC TTTTGTTTACTTCTC TERM 767 654930 - 654950 + T 100 -15.5 -5.02357 | opp_overlap 654930, overlap 654925 GAATATCATGAAAAA GGCGCAATC TAG GATTGCGCC TTTTGTTTACTTCTC Shewana3_0561 656635 - 654980 - | MscS mechanosensitive ion channel TERM 768 657045 - 657059 + G 83 -5.6 -5.17353 | ATACAGTTATTTCGA TGCCTC GAC GCGGCA TTTTTTGATCCCTGT Shewana3_0562 656857 - 657186 + | hypothetical protein Shewana3_0563 657392 - 657267 - | hypothetical protein Shewana3_0564 657648 - 657938 + | hypothetical protein TERM 769 658782 - 658772 - g 79 -6.8 -4.72846 | opp_overlap 658771 658772, overlap 658764 TTACACAGGTAAAAA CACC TAT GGTG CTGATTTTGTGTATA TERM 770 659136 - 659120 - g 72 -9.5 -3.41978 | TCAGAAGGGAACTAA CTTCGAT GGA ATCGAAG ACGACAATGTTTTCA Shewana3_0565 658020 - 659201 + | hypothetical protein Shewana3_0566 659185 - 660093 + | periplasmic solute binding protein TERM 771 660121 - 660151 + G 73 -10.5 -3.32769 | gap 1, overlap 660123 TCTGGAACTGATGTC GAT-CCTGCTGCCA GCAC TGGCGGCGGGGATC TTAGTGCTTTCAACG TERM 772 660123 - 660148 + G 70 -11.1 -2.53273 | overlap 660121 TGGAACTGATGTCGA TCCTGCTGCCA GCAC TGGCGGCGGGG ATCTTAGTGCTTTCA TERM 773 660317 - 660336 + G 71 -5.6 -4.48823 | overlap 660318 660319 TGGATGCCGGCCTTA TTCGCCCT TGCG GGGGCGGG TTTTATCGCTTGGTT Shewana3_0567 660098 - 660865 + | ABC-3 protein Shewana3_0568 661022 - 661804 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 774 662057 - 662067 + G 73 -3.2 -4.91977 | overlap 662042 662052 662050 GATGGAGCTGGAAGA TGGC TCT GTCA TTTTCTGTTTTGATG Shewana3_0569 661848 - 662255 + | hypothetical protein TERM 775 662280 - 662310 + T 100 -15.6 -3.6502 | opp_overlap 662281 662287, overlap 662281 662287 ATTGAGATTTCAGTA ACAAAAAGCCCATC ATC GATGGGCTTTTTGG TTTCAGTAACCACTG TERM 776 662281 - 662309 + T 100 -19.1 -2.78798 | opp_overlap 662281 662287, overlap 662280 662287 TTGAGATTTCAGTAA CAAAAAGCCCATC ATC GATGGGCTTTTTG GTTTCAGTAACCACT TERM 777 662309 - 662281 - T 100 -19.1 -3.17763 | opp_overlap 662281 662280 662287, overlap 662287 TTGAGATTTCAGTAA CAAAAAGCCCATC ATC GATGGGCTTTTTG GTTTCAGTAACCACT TERM 778 662287 - 662303 + T 100 -12.3 -5.00138 | opp_overlap 662281 662287, overlap 662281 662280 TTTCAGTAACAAAAA GCCCATC ATC GATGGGC TTTTTGGTTTCAGTA TERM 779 662303 - 662287 - T 100 -12.3 -5.1356 | opp_overlap 662287 662281 662280, overlap 662281 TTTCAGTAACAAAAA GCCCATC ATC GATGGGC TTTTTGGTTTCAGTA Shewana3_0570 663287 - 662313 - | diguanylate cyclase TERM 780 662342 - 662360 + g 72 -3.9 -4.90013 | gap 1 TTTGTGCGGTGTGCA GGACGCTA CAGT TA-CGTCC TTTTTGCTTGGCTTC Shewana3_0571 664301 - 663306 - | response regulator receiver protein TERM 781 663833 - 663867 + g 70 -10.7 -3.02144 | gap 1, opp_overlap 663833 663835, overlap 663835 GGAGCTTGGCTAACA GATCGGCGGCG-CGCC CCAT GGCGACGTTGGCGATC TCTTGGCAGGCGTCA Shewana3_0572 664860 - 665666 + | enoyl-CoA hydratase Shewana3_0573 666691 - 665732 - | hypothetical protein TERM 782 666855 - 666874 + r 100 -15 -3.77489 | opp_overlap 666855 AAGACAAAATAAAAA CGCCCAGC ATTT GCTGGGCG TTTGCATATTCGCTT TERM 783 666874 - 666855 - R 100 -15 -5.60556 | opp_overlap 666855 AAGACAAAATAAAAA CGCCCAGC ATTT GCTGGGCG TTTGCATATTCGCTT Shewana3_0574 669836 - 666930 - | ATP-dependent helicase HepA TERM 784 668783 - 668802 + g 70 -4.2 -4.63218 | AGGCTTCGGCGGCAA CGGCGACA TCTT TGTAGCTG TTTTCTTCGGCGAGG TERM 785 669594 - 669605 + g 76 -5.8 -4.68424 | overlap 669593 GATTCCGTGGTAGAC GACG AGGC CGTC TTTTTCGGTGAGTTC TERM 786 670994 - 670982 - g 76 -4.7 -5.055 | CGAACGCTTAAAAAA CCTCG AGG CGTGG GGCGTTAAACCTAAG TERM 787 671187 - 671201 + G 76 -7.1 -4.56597 | opp_overlap 671186 AATACGCCAGAAATT GCCGA GTCCA TCGGC TTTTTACCCGGCACC Shewana3_0575 670239 - 671633 + | PhoH family protein TERM 788 671657 - 671674 + F 91 -7.7 -4.86385 | opp_overlap 671657 TTTATTGTTACAAAA GGTCTCA CTCG TGGGACC TTTGTTTTTACGCAT Shewana3_0576 671854 - 675564 + | multi-sensor hybrid histidine kinase TERM 789 675569 - 675598 + F 93 -9.9 -4.30161 | overlap 675570 675572 ATCATCATTAATTGT TTGCCCGGGGCCA ATGA TGGCCCCGCGTGG TTTAGTTTTGTGTAA TERM 790 675570 - 675597 + F 79 -11.2 -3.17012 | overlap 675569 675572 TCATCATTAATTGTT TGCCCGGGGCCA ATGA TGGCCCCGCGTG GTTTAGTTTTGTGTA TERM 791 675572 - 675595 + F 100 -13.8 -3.12584 | overlap 675570 675569 ATCATTAATTGTTTG CCCGGGGCCA ATGA TGGCCCCGCG TGGTTTAGTTTTGTG TERM 792 676174 - 676197 + G 84 -10.4 -4.08216 | opp_overlap 676196, overlap 676165 TTTAACCCGCTCGGC GATTTTACCC GCTG GGGTGAAATC TTTTGAAAAGAATAG Shewana3_0577 675647 - 678049 + | hypothetical protein TERM 793 678068 - 678100 + T 100 -12.2 -4.74598 | gap 1, opp_overlap 678070 TAGTTTTCAGCATCA TAGGCGC-TAACGAG GTGA TTCGTTATGCGCCTA TTTCTTTTGGGTTTC TERM 794 678098 - 678070 - T 72 -9.7 -2.82516 | gap 1, opp_overlap 678068 GTTTTCAGCATCATA GGCGC-TAACGA GGTGAT TCGTTATGCGCC TATTTCTTTTGGGTT Shewana3_0578 679898 - 678090 - | serine/threonine protein kinase TERM 795 680154 - 680137 - H 75 -8.3 -3.78351 | ACAAAGTGGATGAAA GGAGGGC ATAT GCCCGCC CCAGATAAGGCTTTA Shewana3_0579 680146 - 680484 + | hypothetical protein Shewana3_0580 680592 - 681248 + | thiopurine S-methyltransferase TERM 796 681443 - 681431 - T 77 -4.8 -4.9725 | opp_overlap 681441 AGTTTGACAGAAAAA GAGC AGGAG GCTC GAAGTTAAGCCACTT Shewana3_0581 681639 - 681448 - | BFD/(2Fe-2S)-binding domain-containing protein TERM 797 681929 - 681942 + G 70 -3.1 -4.77165 | overlap 681939 GCGGGAATACGATTA TCCAG CGGA TTGGA TTTTGTTGTCGACGA Shewana3_0582 681888 - 683462 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 798 683524 - 683555 + T 100 -16.8 -4.67353 | opp_overlap 683529, overlap 683529 GGATAGTGGCTTAAT CGAAAGGCAATCAG TACT CTGATTGCCTTTTG TTTTTGCCTGAGTGA TERM 799 683550 - 683529 - T 100 -13.1 -3.75153 | opp_overlap 683524 683529 GTGGCTTAATCGAAA GGCAATCAG TACT CTGATTGCC TTTTGTTTTTGCCTG TERM 800 683529 - 683550 + T 100 -13.1 -5.2853 | opp_overlap 683529, overlap 683524 GTGGCTTAATCGAAA GGCAATCAG TACT CTGATTGCC TTTTGTTTTTGCCTG Shewana3_0583 684539 - 683607 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 801 684858 - 684892 + G 83 -13.7 -3.24825 | gap 1, opp_overlap 684853 684849, overlap 684854 684886 GTCAAAGCTACGCCT TGGG-TGGCAAGGCAA ATCG TTGCCATGCCATCCCA TTGGATGTTCTTGCT Shewana3_0584 684630 - 684965 + | hypothetical protein Shewana3_0585 685711 - 684989 - | glycerophosphoryl diester phosphodiesterase TERM 802 685642 - 685662 + g 79 -11.2 -3.63922 | overlap 685640 CGCCTAACTCTATGG CCTTAGCC ATGGC GGCTAAGG TATTTTCCGCCACAT Shewana3_0586 688930 - 685727 - | MscS mechanosensitive ion channel TERM 803 687713 - 687740 + g 73 -3.4 -5.0538 | gap 1, overlap 687712 GCTCGCGGCGTTGGG CACCCAAAAC-AG GTG CTCGTTGAGGGTG TTTTTTAAGGTCAGA TERM 804 688046 - 688029 - G 73 -3.3 -5.03715 | gap 1, opp_overlap 688031, overlap 688031 AGCATCTGCAAAAAA CGCTCGCC AAA GGCG-GAG TTCATTTTGACCCAA TERM 805 688699 - 688709 + g 100 -6.8 -5.62288 | CCTCTTTTAAGCCGT GGTC GAT GACC TTTTTGTTTTCTTCA Shewana3_0587 689883 - 688999 - | hypothetical protein TERM 806 689352 - 689373 + g 73 -5.9 -4.57341 | overlap 689344 ACATGGCGTGGGGGC CGCTATATT GGGA AAAATAGCG TTTTTGCAGCAGGTT TERM 807 689838 - 689813 - G 86 -8.3 -4.66535 | opp_overlap 689809 AACTTTGAAAACAAA GCTGTGCCG CCAAACAT CAGCACAGC TAAGTGTAATTCGAT Shewana3_0588 690776 - 689898 - | phosphatidylserine decarboxylase TERM 808 690240 - 690218 - G 79 -7.7 -4.56597 | GTTCGGTTTCAAAAA TCGCCACGA CACGT TCGTTGCGA GCAAACAGGCCTGGT TERM 809 690613 - 690640 + g 72 -4.1 -4.84673 | TTATAGGCTTCGGGT TCGCTCTGAGC CGCTTC GCTCATATCGA TTTTATATTGTTTGA Shewana3_0589 691921 - 690857 - | ribosome-associated GTPase TERM 810 691932 - 691946 + H 78 -2.1 -5.4251 | CTCACTGATTTGTCT TCGTC AATTA GATGA TTTTTTGTGTCTGAA TERM 811 692009 - 691996 - H 84 -3.8 -5.4505 | CTCTTGAATAAAAAA GCCT GAATTT AGGC TAACTGACATGATAA Shewana3_0590 692034 - 692579 + | oligoribonuclease TERM 812 693428 - 693448 + F 71 -3.2 -5.07107 | TCGCATGTCTGTTCC GTTCTTGG TTGTT CCAAGCGC TTTTTTAGCACTTTC TERM 813 694117 - 694103 - g 73 -2.8 -5.0538 | overlap 694104 GCTTATTGGAAAAAA CCGTTA ACT CAACGA CTGCCGAAGATGCCC Shewana3_0591 693763 - 694218 + | hypothetical protein TERM 814 694239 - 694263 + F 100 -15.1 -3.81755 | opp_overlap 694243, overlap 694243 TGCCGAATGACCTTT CAAAGCCAGCG CAA TGCTGGCTTTG TTGTCTTTACCGGAT TERM 815 694243 - 694259 + F 100 -10.1 -4.52143 | opp_overlap 694243, overlap 694239 GAATGACCTTTCAAA GCCAGCG CAA TGCTGGC TTTGTTGTCTTTACC TERM 816 694259 - 694243 - f 76 -9.4 -3.56568 | opp_overlap 694243 694239 GAATGACCTTTCAAA GCCAGC GCAAT GCTGGC TTTGTTGTCTTTACC Shewana3_0592 694463 - 695962 + | carbohydrate kinase, YjeF related protein TERM 817 696002 - 695974 - f 100 -18.3 -4.08216 | opp_overlap 695974 695979 CTAGGCGCTGTAAAA CTTAAGCGCAGGA CAT TCCCGCGCTTAAG TTGCCTCCTCCATCC TERM 818 695974 - 696002 + F 100 -16.1 -3.10164 | opp_overlap 695974, overlap 695979 CTAGGCGCTGTAAAA CTTAAGCGCAGGA CAT TCCCGCGCTTAAG TTGCCTCCTCCATCC TERM 819 695979 - 695997 + F 77 -10.2 -3.19668 | opp_overlap 695974, overlap 695974 CGCTGTAAAACTTAA GCGCAGGA CAT TCCCGCGC TTAAGTTGCCTCCTC Shewana3_0593 696042 - 696500 + | hypothetical protein Shewana3_0594 696509 - 697900 + | cell wall hydrolase/autolysin Shewana3_0595 697914 - 699860 + | DNA mismatch repair protein MutL Shewana3_0596 699889 - 700779 + | tRNA delta(2)-isopentenylpyrophosphate transferase Shewana3_0597 700872 - 701144 + | RNA-binding protein Hfq TERM 820 701706 - 701696 - g 74 -6.8 -4.40199 | opp_overlap 701694 701696 AAAAATATCAATAAA CGCT TAG AGCG TGTTGATAAACAACG TERM 821 701892 - 701925 + G 70 -4.5 -4.6635 | gap 1 GAAAGTTAGATCTGC CCGACGGTG-CCGTGA TTT TAGCGGACACTGTAGG TTTTATTCGCCATTT TERM 822 702074 - 702046 - g 79 -11.8 -3.31515 | overlap 702036 AAACATGGCGGATAA CTTCGAGCAGGT GCAAA ACGTGCTCGAAG ATATCGATGCAGCCG Shewana3_0598 701168 - 702475 + | GTP-binding protein, HSR1-related TERM 823 702589 - 702599 + G 70 -3.2 -4.81734 | CAAAGGACCACCAGA CCTT GAT GAGG TTTTTCGTAATCTTT Shewana3_0599 702512 - 703657 + | HflK protein Shewana3_0600 703661 - 704554 + | HflC protein TERM 824 704576 - 704597 + F 100 -12.3 -5.71712 | opp_overlap 704576 AATAGTGTATTGAAA TGGGTCCTG AAAA CAGGGCCCA TTTTTTTATCTGCAG TERM 825 704597 - 704576 - f 80 -10.1 -3.66646 | opp_overlap 704576 AATAGTGTATTGAAA TGGGTCCTG AAAA CAGGGCCCA TTTTTTTATCTGCAG Shewana3_0601 704923 - 705513 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Shewana3_0602 705513 - 706727 + | cytochrome b/b6 domain-containing protein Shewana3_0603 706727 - 707425 + | cytochrome c1 TERM 826 707462 - 707490 + F 100 -19.7 -5.34857 | opp_overlap 707467 TAGTATCCGCATAGT GTAAACGGGGGGC TTT GCCCCTCGTTTAC TTTTGTTTTATTTCG TERM 827 707485 - 707467 - f 90 -11.6 -3.63627 | opp_overlap 707462 TCCGCATAGTGTAAA CGGGGGGC TTT GCCCCTCG TTTACTTTTGTTTTA sspA 707522 - 708151 + | stringent starvation protein A Shewana3_0605 708151 - 708588 + | ClpXP protease specificity-enhancing factor TERM 828 708637 - 708620 - f 89 -11.3 -3.56643 | opp_overlap 708620 TCTATACTCTTGAAA GCCAGTC TATC GACTGGC TTTTTATTGGATAAA TERM 829 708620 - 708637 + F 100 -11.3 -5.10461 | opp_overlap 708620 TCTATACTCTTGAAA GCCAGTC TATC GACTGGC TTTTTATTGGATAAA Shewana3_0606 708744 - 709319 + | aminodeoxychorismate synthase, glutamine amidotransferase subunit TERM 830 709444 - 709411 - f 72 -7.6 -3.76952 | gap 1, overlap 709440 TTTATGCAAGGCAAA GTCCGTGTAGTGTAG TTATT CTACA-TAAACGGAC GATAACGCGGCAGAA TERM 831 710613 - 710602 - g 70 -2.2 -4.91712 | overlap 710605 CTTAACCGATAAAAA CTAC ACCG GCAG CAGTGAACACGACAT Shewana3_0607 709775 - 712255 + | peptidase S9 prolyl oligopeptidase TERM 832 712274 - 712290 + F 100 -12.3 -5.24796 | opp_overlap 712274 TCGCGACAATATGAA GGCCTCA ATA TGAGGCC TTTTTGTTGTGTGAA TERM 833 712290 - 712274 - f 100 -12.3 -3.41745 | opp_overlap 712274 TCGCGACAATATGAA GGCCTCA ATA TGAGGCC TTTTTGTTGTGTGAA Shewana3_0608 712455 - 713600 + | putative signal transduction protein TERM 834 714471 - 714481 + G 73 -5.4 -4.66953 | opp_overlap 714471 GCGTTTTTATCACAA CATG CCC CATG TTTTTCCCCTGTTCC Shewana3_0609 713656 - 714567 + | alpha/beta hydrolase domain-containing protein argD 714876 - 716093 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 835 716103 - 716128 + F 100 -11.3 -5.24129 | gap 1, opp_overlap 716103 GCCTAAGCGACCAAA GGAGTGCTGAAT CTT ATTC-GCACTCC TTTTTTGTCAGGGAA TERM 836 716128 - 716103 - f 95 -11.3 -3.794 | gap 1, opp_overlap 716103 GCCTAAGCGACCAAA GGAGTGCTGAAT CTT ATTC-GCACTCC TTTTTTGTCAGGGAA Shewana3_0611 716221 - 717240 + | arginine succinyltransferase TERM 837 718561 - 718571 + G 74 -8.2 -4.08767 | opp_overlap 718550 ATCACCGGAGCTTCT GGCG CAG CGCC TTTTGGCGGCGTAGG Shewana3_0612 717250 - 718713 + | succinylglutamic semialdehyde dehydrogenase TERM 838 718723 - 718742 + F 100 -10.8 -4.72272 | opp_overlap 718727 GAGTGACATCATTGA GGAAGAAC CTAG GTTCTTCC TTTTTCATCACAAGC Shewana3_0613 718878 - 719681 + | hypothetical protein TERM 839 719742 - 719713 - T 100 -14.5 -3.61178 | opp_overlap 719713 719719, overlap 719719 TTGAGTCATCTTAAA CAAAAACGCCATC GATA GATGGCGTTTTTA TTGGTGGCACTAGAG TERM 840 719713 - 719742 + T 93 -12.3 -3.15544 | opp_overlap 719713 719719, overlap 719719 TTGAGTCATCTTAAA CAAAAACGCCATC GATA GATGGCGTTTTTA TTGGTGGCACTAGAG TERM 841 719736 - 719719 - T 100 -11.3 -5.28942 | opp_overlap 719713 719719, overlap 719713 CATCTTAAACAAAAA CGCCATC GATA GATGGCG TTTTTATTGGTGGCA TERM 842 719719 - 719736 + T 100 -11.3 -5.1356 | opp_overlap 719719 719713, overlap 719713 CATCTTAAACAAAAA CGCCATC GATA GATGGCG TTTTTATTGGTGGCA Shewana3_0614 721149 - 719821 - | ATPase domain-containing protein TERM 843 719893 - 719903 + g 71 -5.4 -4.48299 | AAGCTCAATGCCATA TTGC TCG GCAA TTTCTTTCACTATCG TERM 844 719953 - 719966 + g 70 -8.1 -3.70478 | overlap 719943 CATAACTGATTCATC GAGGC GCGT GCCTC TTTGGGTGAGTTTAT TERM 845 720811 - 720826 + g 70 -9 -3.57263 | overlap 720807 CGGCCCTTTTGCCTG CCAGAC GCGG GTCTGG TTTGGCGCTAAAGGT Shewana3_0615 721820 - 721146 - | two component transcriptional regulator TERM 846 721197 - 721211 + g 73 -3.4 -5.0133 | overlap 721180 721199 GCGGCGGGTTTCAAT CGCGGT TTT GCCGAG TTTTTTACGCAGGTG Shewana3_0616 722148 - 721801 - | hypothetical protein TERM 847 722192 - 722169 - R 100 -9 -5.4505 | gap 1, opp_overlap 722168 722169 CTCCCCAATAAAAAA TGGCCTAG-AT TTT ATGCTAGGCCA CTTTAATGAAACAGG Shewana3_0617 722866 - 722231 - | cAMP-regulatory protein Shewana3_0618 723289 - 724068 + | Sel1 domain-containing protein TERM 848 724093 - 724123 + T 100 -16.2 -5.06103 | overlap 724096 TGGTTGCTTGTCTTG TTATCAGCCCGAGC CAT GCTCGGGCTGATTG TTTTTTAAGGATTAT TERM 849 724096 - 724120 + T 100 -20.1 -4.62085 | overlap 724093 TTGCTTGTCTTGTTA TCAGCCCGAGC CAT GCTCGGGCTGA TTGTTTTTTAAGGAT Shewana3_0619 724761 - 724189 - | 2'-5' RNA ligase TERM 850 725033 - 725064 + G 70 -9.4 -3.57406 | opp_overlap 725025, overlap 725031 725034 TGATCAAGCCCTAGA GGCCATCACGCTGC AGTT GCATTGTGATGGCG TATTTGTGCTGACGG TERM 851 725034 - 725063 + G 77 -12.9 -2.74122 | opp_overlap 725025, overlap 725033 725031 GATCAAGCCCTAGAG GCCATCACGCTGC AGTT GCATTGTGATGGC GTATTTGTGCTGACG Shewana3_0620 724932 - 727118 + | diguanylate cyclase/phosphodiesterase Shewana3_0621 727324 - 727881 + | hypothetical protein TERM 852 727898 - 727936 + F 76 -6.6 -4.56597 | overlap 727901 727903 727904 TCGGCTTATTTGTAC TATTGGCGCCCCGAGAGT CTT GCTGTCGGGGCGATGTTA TTTTTAAGGCAAGCC TERM 853 727901 - 727933 + F 82 -8.3 -4.40561 | overlap 727898 727903 727904 GCTTATTTGTACTAT TGGCGCCCCGAGAGT CTT GCTGTCGGGGCGATG TTATTTTTAAGGCAA TERM 854 727903 - 727931 + F 88 -10.9 -3.80746 | overlap 727901 727898 727904 TTATTTGTACTATTG GCGCCCCGAGAGT CTT GCTGTCGGGGCGA TGTTATTTTTAAGGC TERM 855 727904 - 727930 + F 100 -14.4 -2.87725 | overlap 727903 727901 727898 TATTTGTACTATTGG CGCCCCGAGAGT CTT GCTGTCGGGGCG ATGTTATTTTTAAGG Shewana3_0622 728053 - 730560 + | ATP-dependent helicase HrpB Shewana3_0623 730638 - 732932 + | penicillin-binding protein 1B TERM 856 732959 - 732989 + F 79 -8.3 -4.07687 | opp_overlap 732961, overlap 732961 GATAGGTAAAGCGAT AACAGCGGTGC AGCAAAATG GCACCGCTGTC TTTTAAAAAGAGAGT TERM 857 732987 - 732961 - f 83 -10.9 -3.48063 | opp_overlap 732959 732961 TAGGTAAAGCGATAA CAGCGGTGC AGCAAAATG GCACCGCTG TCTTTTAAAAAGAGA TERM 858 732961 - 732987 + F 84 -10.9 -3.63744 | opp_overlap 732961, overlap 732959 TAGGTAAAGCGATAA CAGCGGTGC AGCAAAATG GCACCGCTG TCTTTTAAAAAGAGA Shewana3_0624 733010 - 733288 + | PpiC-type peptidyl-prolyl cis-trans isomerase Shewana3_0625 733459 - 733896 + | hypothetical protein TERM 859 734545 - 734575 + F 72 -9.9 -2.80821 | gap 1, opp_overlap 734554, overlap 734554 ATTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TGGTGTATTTGGCAG TERM 860 734565 - 734554 - f 73 -7.2 -4.09511 | opp_overlap 734545 734554 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 861 734554 - 734565 + F 81 -7.2 -4.60487 | opp_overlap 734554, overlap 734545 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 862 735083 - 735026 - f 73 -3.6 -4.98522 | gap 3, opp_overlap 735042, overlap 735037 735041 735042 735047 AAGGTTATACAAAAA CACTTAACAAACAAAGGCAAAGCGACGCG TGC CGCG-CGC-TTGC-TTTGAACGTTAGATG CTTCTCGGAGAAAAT TERM 863 735072 - 735037 - f 82 -8.5 -4.27911 | gap 3, opp_overlap 735042, overlap 735026 735041 735042 735047 AAAACACTTAACAAA CAAAGGCAAAGCGACGCG TGC CGCG-CGC-TTGC-TTTG AACGTTAGATGCTTC TERM 864 735069 - 735041 - f 75 -6 -4.69214 | gap 2, opp_overlap 735042, overlap 735037 735026 735042 735047 CACTTAACAAACAAA GGCAAAGCGACGCG TGC CGCG-CGC-TTGCT TTGAACGTTAGATGC TERM 865 735068 - 735042 - f 74 -9.5 -3.40444 | gap 2, opp_overlap 735042, overlap 735041 735037 735026 735047 ACTTAACAAACAAAG GCAAAGCGACGCG TGC CGCG-CGC-TTGC TTTGAACGTTAGATG TERM 866 735042 - 735068 + F 78 -9.5 -3.61268 | gap 2, opp_overlap 735042 735041 735037 735026 735047 ACTTAACAAACAAAG GCAAAGCGACGCG TGC CGCG-CGC-TTGC TTTGAACGTTAGATG TERM 867 735064 - 735047 - f 80 -9.1 -3.97446 | gap 1, opp_overlap 735042, overlap 735042 735041 735037 735026 ACAAACAAAGGCAAA GCGACGCG TGC CGCG-CGC TTGCTTTGAACGTTA TERM 868 735140 - 735154 + G 80 -4.2 -5.14563 | opp_overlap 735137, overlap 735142 GCGATTAGCAGACTA TGGCTC ACA GGGCTA TTTTTTGCTGGAGGC Shewana3_0626 735102 - 736592 + | hypothetical protein TERM 869 736731 - 736757 + G 71 -5.9 -4.28774 | TATGGACTGGCTTTA TTCTCAGGGAT TTCTT ATCTCTGGGGA TTTTGGATTAAGTAC TERM 870 737443 - 737400 - g 76 -8.4 -4.16016 | gap 3, opp_overlap 737412, overlap 737426 CCAGCTCTTAACAAA CAGCTCAACGAGGACGCAGCA AAAAG CGCTGCG-CCT-GTT-AGCTG AGCGTTATCTCCATA Shewana3_0627 736683 - 737444 + | hypothetical protein TERM 871 737622 - 737595 - f 88 -12.6 -2.65264 | TGATTAGCGAGACGA CCGTCCGCCCCA TGGA CGGGGCGGTCGA GCATCCAAGGAAGGA Shewana3_0628 737995 - 738405 + | hypothetical protein Shewana3_0629 738524 - 738754 + | hypothetical protein TERM 872 738778 - 738810 + F 88 -9.9 -4.08692 | opp_overlap 738785, overlap 738782 738785 ATTGCAGACAGATGA TTTACAAGGGCAAAC TGG GTTTGCCCTTGTTCG TTTTACGAGGGATTA TERM 873 738782 - 738806 + F 100 -17.3 -3.66908 | opp_overlap 738785, overlap 738778 738785 CAGACAGATGATTTA CAAGGGCAAAC TGG GTTTGCCCTTG TTCGTTTTACGAGGG TERM 874 738803 - 738785 - f 100 -13.2 -3.39036 | opp_overlap 738785 738782 738778 ACAGATGATTTACAA GGGCAAAC TGG GTTTGCCC TTGTTCGTTTTACGA TERM 875 738785 - 738803 + F 100 -13.2 -3.965 | opp_overlap 738785, overlap 738782 738778 ACAGATGATTTACAA GGGCAAAC TGG GTTTGCCC TTGTTCGTTTTACGA TERM 876 741022 - 741036 + F 81 -4.2 -5.33985 | GGGCTCTCCGAATCG GACATG GTG CTTGTC TTTATTTTTTTTGCA Shewana3_0631 741265 - 741966 + | hypothetical protein TERM 877 742173 - 742183 + T 76 -6.8 -4.4448 | TAACCGCTTAAGCCT GCGA ACC TCGC TTTCTTTCGCAGTTT Shewana3_0632 743582 - 742284 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Shewana3_0633 746981 - 743874 - | molydopterin dinucleotide-binding region TERM 878 744014 - 744027 + g 79 -5.3 -4.9218 | CGACGCGGATCAGCG GATTG GCGG CAATC TTTTTATCATCGATG Shewana3_0634 748138 - 747044 - | polysulphide reductase, NrfD TERM 879 748039 - 748023 - G 71 -5.1 -4.49556 | TTCGCACTAAATAAA TGAATGG TCG CCACCCA CACACTGGCGTAGGC Shewana3_0635 748883 - 748128 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_0636 749138 - 751126 + | ATPase domain-containing protein TERM 880 751595 - 751559 - g 74 -9.5 -3.57144 | opp_overlap 751553 CGCGGGAGCGGGAAA TCCTTACCCTTATCGCC AAA GGCTATAAGAATCAGGA GATCGCCGATACGCT Shewana3_0637 751123 - 751734 + | two component LuxR family transcriptional regulator TERM 881 752329 - 752305 - g 74 -6.5 -4.371 | opp_overlap 752312, overlap 752307 752312 752314 GCGATTATATTAAAA CCCAAAATGGT GAC ACCATTTTATG TCACACCATGGCAGA TERM 882 752312 - 752322 + G 71 -5.4 -4.52589 | opp_overlap 752312 752307 752305 752314 TATTAAAACCCAAAA TGGT GAC ACCA TTTTATGTCACACCA TERM 883 752322 - 752312 - g 71 -5.4 -4.44277 | opp_overlap 752312, overlap 752307 752305 752314 TATTAAAACCCAAAA TGGT GAC ACCA TTTTATGTCACACCA TERM 884 753200 - 753188 - g 77 -10.5 -3.62291 | overlap 753186 CGAACAGGACAAACA GCGCG AAG CGCGC GACAAACAGCGTGAA TERM 885 754100 - 754089 - g 78 -5.8 -4.87626 | overlap 754094 CTCGAAGAGCAAAAA GAGC AGGC GCTC GAAGCGCGGATGGAA TERM 886 754348 - 754321 - g 71 -5.5 -4.55128 | gap 1, opp_overlap 754337 754338, overlap 754324 AGCTTGAAACCAAAA TCAGCCGCGCCG AGCAG CGTCGCAGC-GA AGTATTGCGCTTCGA Shewana3_0638 751959 - 755630 + | hypothetical protein TERM 887 755806 - 755836 + G 72 -3.8 -4.88388 | overlap 755820 755821 GAATCAAATCAATCG CACCGTGGCTTCGG CCG CCGAGGGCGATGTG TTTTTCTGCGGTTAT Shewana3_0639 755630 - 756295 + | hypothetical protein Shewana3_0640 756338 - 757558 + | hypothetical protein TERM 888 758379 - 758365 - g 77 -10 -3.80573 | overlap 758370 CGCATTAGCATTAAA CAGCAG CAC CTGCTG GCGCATCGGCTTGAG Shewana3_0641 757546 - 758418 + | hypothetical protein TERM 889 759060 - 759035 - g 82 -7.5 -4.68593 | overlap 759037 TGCAGGACTTAAAAA GCTTTGGCCGC CTTG GCGGCAAAACC TTCGGCTTTTACATC Shewana3_0642 758809 - 760059 + | sodium:dicarboxylate symporter TERM 890 760101 - 760069 - T 100 -13 -3.39668 | gap 1, opp_overlap 760077, overlap 760077 TCTTAAATCGCACAA CTAAAAAAGCCACTG ATTA CAGTGGCTTTTTT-G TATCAGGACGAGACA TERM 891 760077 - 760094 + T 100 -11.3 -5.36441 | opp_overlap 760077 760069 CGCACAACTAAAAAA GCCACTG ATTA CAGTGGC TTTTTTGTATCAGGA TERM 892 760094 - 760077 - T 100 -11.3 -5.32944 | opp_overlap 760077, overlap 760069 CGCACAACTAAAAAA GCCACTG ATTA CAGTGGC TTTTTTGTATCAGGA Shewana3_0643 760592 - 760122 - | hypothetical protein TERM 893 760903 - 760871 - R 70 -8 -3.72576 | gap 1, opp_overlap 760871 760875 760878, overlap 760878 TTTTTGTTCAGGAAA TAAAA-AAGCCACTA TTAT CAGTGGCTTGTTTTA ATCTTTGGCACTCGG TERM 894 760875 - 760898 + r 70 -5.3 -4.49756 | opp_overlap 760871 760878, overlap 760871 760878 TGTTCAGGAAATAAA AAAGCCACT ATTATC AGTGGCTTG TTTTAATCTTTGGCA TERM 895 760895 - 760878 - R 100 -7.7 -5.68438 | opp_overlap 760875 760871 760878, overlap 760871 TCAGGAAATAAAAAA GCCACTA TTAT CAGTGGC TTGTTTTAATCTTTG TERM 896 760878 - 760895 + r 74 -7 -4.34993 | opp_overlap 760878 760871, overlap 760875 760871 TCAGGAAATAAAAAA GCCACT ATTATC AGTGGC TTGTTTTAATCTTTG TERM 897 760968 - 760998 + r 100 -10.4 -4.42806 | opp_overlap 760968 GCACTCACTCTCAAA CAGCAACGTCGCTT ACG GGGCGATGTCGCTG TTTATTTACGAGTCA TERM 898 760998 - 760968 - R 75 -9 -3.57792 | opp_overlap 760968 GCACTCACTCTCAAA CAGCAACGTCGC TTACGGG GCGATGTCGCTG TTTATTTACGAGTCA Shewana3_0644 761488 - 761000 - | hypothetical protein TERM 899 761762 - 761740 - R 74 -7.6 -3.91911 | CCGAGGTGAATCAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAGGAGGACT TERM 900 761838 - 761828 - R 73 -8.2 -3.6215 | opp_overlap 761833 CCAACGGAGTTGAAA GCCC CTT GGGC TCATAGCCAAATTTG Shewana3_0645 763014 - 762022 - | hypothetical protein TERM 901 762600 - 762614 + g 70 -2.8 -4.87008 | CGTAACTAGTTGAGT TAATCC TTT GGAATA TTTCTTTTATGTCTT Shewana3_0646 763574 - 763011 - | hypothetical protein TERM 902 763240 - 763263 + g 80 -10.3 -3.79113 | TGAAAGAATGAGTCT GAGTCGGGC CAATAT GCTCGACTC TTCTTATAAGAAAAT TERM 903 763367 - 763387 + g 79 -9.1 -4.18018 | CCCCATATCGACGAC TGGGTTTTA TAC TAAAGCCCA TTTTACCTGAACCAA TERM 904 763471 - 763483 + g 76 -7.7 -4.3467 | AGTTCATAGACCATG TCCTC ACA GAGGA TTTTACTCTGACCAT Shewana3_0647 764680 - 763691 - | NERD domain-containing protein TERM 905 764964 - 764974 + r 73 -8.2 -3.6215 | opp_overlap 764957 ATAAGAACGCTTAAT GCCC AAG GGGC TTTCAACTCCGTTAG TERM 906 765143 - 765123 - R 71 -4.6 -4.7254 | opp_overlap 765123, overlap 765126 765127 ACTCTTTATTAAAAA TCAGGGGG TGAAG CCCCACGA CTTTGATTCACCTCG TERM 907 765232 - 765249 + r 100 -11.3 -4.52589 | opp_overlap 765232 TGCGATAACAAAAAA GCCACTG TGGT CAGTGGC TTTTATCTGAAAAAA TERM 908 765249 - 765232 - R 100 -11.3 -5.55769 | opp_overlap 765232 TGCGATAACAAAAAA GCCACTG TGGT CAGTGGC TTTTATCTGAAAAAA Shewana3_0648 766280 - 765288 - | fructose-1,6-bisphosphatase Shewana3_0649 766577 - 768868 + | dipeptidyl-peptidase IV TERM 909 768952 - 768931 - T 95 -13.1 -3.08133 | opp_overlap 768931, overlap 768933 CATGCAGTTATCCAA GAGTGAGGT TAAC ACCTCACTC TTTTTTTTACGCGGT TERM 910 768931 - 768952 + T 100 -13.1 -5.75945 | opp_overlap 768931 768933 CATGCAGTTATCCAA GAGTGAGGT TAAC ACCTCACTC TTTTTTTTACGCGGT TERM 911 768950 - 768933 - T 74 -9.9 -3.09878 | opp_overlap 768931, overlap 768931 TGCAGTTATCCAAGA GTGAGGT TAAC ACCTCAC TCTTTTTTTTACGCG TERM 912 769169 - 769198 + T 84 -10.9 -3.61517 | opp_overlap 769175, overlap 769175 CATATTGCTGAGATA AAAAAACCAGATC CGAG GATCTGGTTTTTA TTATTCAAACGGACT TERM 913 769192 - 769175 - T 100 -9.9 -5.71712 | opp_overlap 769169 769175 GCTGAGATAAAAAAA CCAGATC CGAG GATCTGG TTTTTATTATTCAAA TERM 914 769175 - 769192 + T 100 -9.9 -5.29445 | opp_overlap 769175, overlap 769169 GCTGAGATAAAAAAA CCAGATC CGAG GATCTGG TTTTTATTATTCAAA TERM 915 769233 - 769212 - T 74 -10.3 -2.66748 | opp_overlap 769216, overlap 769208 TATTATTCAAACGGA CTTAGAAGA TTAG TCTTCTAAG TTACCGCAGAAACGG Shewana3_0650 769937 - 769221 - | two-component response regulator TERM 916 769758 - 769795 + g 76 -2.9 -5.13722 | gap 1, overlap 769762 769781 CAACAACAGACCGTT TTTACCTGGTAGGTTA ATGTCCA TAACC-ACTAGGTTAA TTTTGTTTTCCTGCA TERM 917 770151 - 770170 + H 85 -2.2 -5.79526 | opp_overlap 770154, overlap 770154 ATAAGCAATAGTTAT AAATAGTT CCTT AACTATTG TTTTTTTTAAAATGT TERM 918 770154 - 770167 + H 73 -3.9 -4.96028 | opp_overlap 770154, overlap 770151 AGCAATAGTTATAAA TAGTT CCTT AACTA TTGTTTTTTTTAAAA Shewana3_0651 770524 - 770958 + | hypothetical protein TERM 919 770982 - 771020 + F 71 -4.5 -4.68456 | overlap 770987 TTTATTACTATTTTT CTTATCCGGCTTTGCCT GTAAA GGGCAAGGCTAGGTCAG TTATTTTTTGATCCT TERM 920 772115 - 772094 - g 70 -9.4 -3.61356 | opp_overlap 772109 ATGAGGCAGGGCAAA CCACCACG CTTGGC CGTGGCGG TAGCGACTATTCTGC Shewana3_0652 771517 - 772872 + | aspartate kinase III TERM 921 772946 - 772984 + G 74 -11 -3.06815 | opp_overlap 772959, overlap 772948 ACCCTGCCGATTTAC CACTTTAAGCCAAGTGGC CAT GCCGCTGGCCCTAAAGTG TATATTCAGGCCAAT TERM 922 773007 - 773033 + G 74 -4.2 -4.7629 | overlap 773008 AGGCCAATGTCCACG GCGCCGAGGTGC AGG GCAACGCGGTGA TTTTTCAGTTGATGA Shewana3_0653 772874 - 773989 + | succinylglutamate desuccinylase/aspartoacylase TERM 923 774034 - 774005 - T 100 -12.3 -4.4715 | opp_overlap 774010, overlap 774010 CGGCAATCCACAAAA CAAAACGCCAATC ATGT GATTGGCGTTTTT TATTCCAATCTACAA TERM 924 774029 - 774010 - T 100 -12.2 -5.19275 | opp_overlap 774010, overlap 774005 ATCCACAAAACAAAA CGCCAATC ATGT GATTGGCG TTTTTTATTCCAATC TERM 925 774010 - 774029 + T 100 -12.2 -5.46657 | opp_overlap 774010 774005 ATCCACAAAACAAAA CGCCAATC ATGT GATTGGCG TTTTTTATTCCAATC Shewana3_0654 775021 - 774044 - | Mg2 transporter protein, CorA family protein Shewana3_0655 775190 - 775564 + | hypothetical protein TERM 926 775590 - 775615 + T 100 -11.3 -5.17576 | opp_overlap 775594 TACTCCTGCAGACAA TAAAGGCAATC GATT GATTGCCTTTG TTTTTTAGCTTAGTG TERM 927 775611 - 775594 - T 93 -9.9 -4.38927 | opp_overlap 775590 CCTGCAGACAATAAA GGCAATC GATT GATTGCC TTTGTTTTTTAGCTT Shewana3_0656 776282 - 775653 - | two component LuxR family transcriptional regulator Shewana3_0657 778071 - 776275 - | nitrate/nitrite sensor protein NarQ TERM 928 778152 - 778138 - H 73 -5.8 -4.50976 | TTTTACATTAGAAAA TAATGT ACT ACATTA ACGAAAACATAAAAG nrfA 778296 - 779717 + | cytochrome c nitrite reductase TERM 929 779778 - 779753 - T 86 -10.4 -3.83205 | opp_overlap 779753 ACCCCTCATAGTAAA GTCCCCGCAA TTTAGG TTGCGGGGGC TTTTTATTTTAACGG TERM 930 779753 - 779778 + T 100 -13.3 -5.45802 | opp_overlap 779753 ACCCCTCATAGTAAA GTCCCCGCAAT TTAG GTTGCGGGGGC TTTTTATTTTAACGG Shewana3_0659 781833 - 779893 - | diguanylate cyclase/phosphodiesterase with GAF sensor Shewana3_0660 782039 - 782809 + | hypothetical protein TERM 931 782795 - 782813 + T 73 -8.8 -3.41051 | opp_overlap 782795 ATTAGTACCAAAGAA GCCATCTC TAA GTGATGGC TTATCCTCCAAGTAA TERM 932 782813 - 782795 - T 80 -8.8 -4.03141 | opp_overlap 782795 ATTAGTACCAAAGAA GCCATCTC TAA GTGATGGC TTATCCTCCAAGTAA TERM 933 782866 - 782907 + T 95 -8 -4.98857 | opp_overlap 782872, overlap 782867 782869 782897 CGAAACTCAAAGCGG ATATCACCTCGGCGAAGG CGTAGT CTTTCGTCGAGGAGATGG TTTTTCTCGTTCAAT TERM 934 782867 - 782906 + T 90 -11.5 -3.5823 | opp_overlap 782872, overlap 782866 782869 782897 GAAACTCAAAGCGGA TATCACCTCGGCGAAGG CGTAGT CTTTCGTCGAGGAGATG GTTTTTCTCGTTCAA TERM 935 782869 - 782904 + T 89 -11.9 -3.35709 | opp_overlap 782872, overlap 782867 782866 782897 AACTCAAAGCGGATA TCACCTCGGCGAAGG CGTAGT CTTTCGTCGAGGAGA TGGTTTTTCTCGTTC Shewana3_0661 783428 - 782844 - | hypothetical protein Shewana3_0662 783588 - 783935 + | hypothetical protein TERM 936 784068 - 784078 + F 74 -6.8 -4.35327 | TGCTATTGTGTTCCT GCAC GAG GTGC TTTAGTTTTTACTGA TERM 937 784935 - 784923 - g 73 -6.2 -4.48987 | GCGGGACAATTAAAA GCGG ATACG CCGC TCACGGGTAAATTTA Shewana3_0663 784206 - 785063 + | protein of unknown function RIO1 TERM 938 785069 - 785113 + T 91 -11.8 -3.41726 | gap 1, opp_overlap 785083, overlap 785070 785083 AAACTATTAGCTGAC ATC-CTAATAAAAAAGACGCT GATA AGCGTCTTTTTTATTGGAGAA TATTATTAACGTGTT TERM 939 785070 - 785112 + T 100 -15.3 -2.64313 | gap 1, opp_overlap 785083, overlap 785069 785083 AACTATTAGCTGACA TC-CTAATAAAAAAGACGCT GATA AGCGTCTTTTTTATTGGAGA ATATTATTAACGTGT TERM 940 785083 - 785098 + T 100 -9 -5.4505 | opp_overlap 785083, overlap 785070 785069 CATCCTAATAAAAAA GACGCT GATA AGCGTC TTTTTTATTGGAGAA TERM 941 785098 - 785083 - T 100 -9 -5.46657 | opp_overlap 785083 785070 785069 CATCCTAATAAAAAA GACGCT GATA AGCGTC TTTTTTATTGGAGAA Shewana3_0664 786022 - 785789 - | transposase IS3/IS911 family protein TERM 942 786428 - 786461 + H 72 -6.1 -4.36262 | gap 1, opp_overlap 786400 786436 786437, overlap 786430 786438 ACTTTTTTAAGCCAT GT-CTGAAACGGTGCA GCT TGCACTATTTCAGTGC TTTTACTCTAAATGT TERM 943 786430 - 786458 + H 79 -11.1 -3.16202 | opp_overlap 786400 786436 786437, overlap 786428 786438 TTTTTTAAGCCATGT CTGAAACGGTGCA GCT TGCACTATTTCAG TGCTTTTACTCTAAA Shewana3_0665 786678 - 787370 + | OmpA/MotB domain-containing protein TERM 944 787407 - 787382 - f 72 -6.1 -4.40572 | opp_overlap 787387, overlap 787385 787387 ATAATTTCCATAAAA TAAGAGTCGCC TACG GGCGACTTTTT ACTCTCTGCACTCGC TERM 945 787404 - 787385 - f 79 -7.8 -4.31397 | opp_overlap 787387, overlap 787382 787387 ATTTCCATAAAATAA GAGTCGCC TACG GGCGACTT TTTACTCTCTGCACT TERM 946 787387 - 787402 + F 100 -10.4 -4.84527 | opp_overlap 787385 787382 787387 TTCCATAAAATAAGA GTCGCC TACG GGCGAC TTTTTACTCTCTGCA TERM 947 787402 - 787387 - f 86 -10.4 -3.75581 | opp_overlap 787387, overlap 787385 787382 TTCCATAAAATAAGA GTCGCC TACG GGCGAC TTTTTACTCTCTGCA Shewana3_0666 787610 - 788437 + | hypothetical protein TERM 948 788452 - 788481 + T 100 -15.9 -3.37533 | opp_overlap 788458, overlap 788458 GTGCTAATCGTCTAT TAAAAATGGCGCC CTAT GGCGCCATTTTTG TTGCTCGTTTTAGCA TERM 949 788475 - 788458 - T 100 -12.7 -4.7254 | opp_overlap 788452 788458 ATCGTCTATTAAAAA TGGCGCC CTAT GGCGCCA TTTTTGTTGCTCGTT TERM 950 788458 - 788475 + T 100 -12.7 -5.16071 | opp_overlap 788458, overlap 788452 ATCGTCTATTAAAAA TGGCGCC CTAT GGCGCCA TTTTTGTTGCTCGTT Shewana3_0667 789876 - 788512 - | magnesium transporter Shewana3_0668 790364 - 790089 - | HPr family phosphocarrier protein Shewana3_0669 791205 - 790351 - | hypothetical protein TERM 951 790866 - 790924 + g 74 -9.8 -3.6003 | gap 2, overlap 790866 CAAGCTTAATGGCTT -C-CTGCAGCGATACTCGGCTCTTAGAT AAGGG ATGTAAGCGCCGAGTCTCGCTGTAGCGC TTTAACAGTACTTTA TERM 952 790866 - 790923 + g 88 -15.8 -2.75536 | gap 1, overlap 790866 CAAGCTTAATGGCTT C-CTGCAGCGATACTCGGCTCTTAGAT AAGGG ATGTAAGCGCCGAGTCTCGCTGTAGCG CTTTAACAGTACTTT Shewana3_0670 791645 - 791202 - | PTS IIA-like nitrogen-regulatory protein PtsN Shewana3_0671 791935 - 791648 - | sigma 54 modulation protein / SSU ribosomal protein S30P Shewana3_0672 793439 - 791964 - | RNA polymerase factor sigma-54 Shewana3_0673 794276 - 793545 - | ABC transporter related Shewana3_0674 794824 - 794273 - | OstA family protein TERM 953 794668 - 794696 + g 70 -3.1 -4.8048 | AGCCTTGGGTGACTT CAACCGGACCG AAGAAAA TGATCTGGTTG TTTTTAATGTCCGCA Shewana3_0675 795371 - 794811 - | hypothetical protein Shewana3_0676 795919 - 795368 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase Shewana3_0677 796896 - 795919 - | KpsF/GutQ family protein TERM 954 797254 - 797235 - H 78 -7.2 -4.56702 | CCTTAACTAAACAAA CTTGCTGA TTTA TCAACAAG GGCGAAAACATTAAG TERM 955 798176 - 798157 - g 70 -8.6 -3.68351 | gap 1, opp_overlap 798150, overlap 798160 GCCTGAGGAGTTAAA GCATGCGGA CAA TCCGCA-GC TCAAACAGTTTATTC Shewana3_0678 797459 - 798277 + | ABC transporter related Shewana3_0679 798274 - 799059 + | hypothetical protein TERM 956 799162 - 799173 + G 72 -3.6 -4.89233 | ATGTTTCTCTTAACG GGCT TAGC GGCC TTTTTGGTGTTGGTG Shewana3_0680 799114 - 799587 + | hypothetical protein TERM 957 799979 - 799965 - g 70 -2.1 -4.91873 | gap 1, overlap 799966 799967 TACACTAACCAAAAA GTGGAG TTTT CTCC-C GGTAGTGATTTCAGC Shewana3_0681 799599 - 800252 + | toluene tolerance family protein Shewana3_0682 800258 - 800542 + | SpoIIAA family protein Shewana3_0683 800559 - 800810 + | BolA family protein TERM 958 801270 - 801294 + G 70 -2.7 -4.84359 | overlap 801263 801272 ATCAAGGCCCGTGTC GATGGTCGCTT AAA GGGCGCCCATA TTTTTATGGACATGG Shewana3_0684 800823 - 802082 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 959 802104 - 802139 + T 86 -11.5 -3.24825 | gap 1, opp_overlap 802114, overlap 802107 802114 CGTAGGATTCGCTCC CAATAAAAAA-CCAGC CAAGT GCTGGTTTTTTTATTG TATTCATTCAGCTGA TERM 960 802107 - 802136 + T 70 -7.4 -3.76048 | gap 1, opp_overlap 802114, overlap 802104 802114 AGGATTCGCTCCCAA TAAAAAA-CCAGC CAAGT GCTGGTTTTTTTA TTGTATTCATTCAGC TERM 961 802128 - 802114 - T 95 -7.1 -5.4505 | opp_overlap 802107 802104 802114 GCTCCCAATAAAAAA CCAGC CAAGT GCTGG TTTTTTTATTGTATT TERM 962 802114 - 802128 + T 100 -7.1 -5.94214 | opp_overlap 802114, overlap 802107 802104 GCTCCCAATAAAAAA CCAGC CAAGT GCTGG TTTTTTTATTGTATT Shewana3_0685 802760 - 802182 - | TetR family transcriptional regulator Shewana3_0686 802841 - 803701 + | hypothetical protein Shewana3_0687 803698 - 804102 + | hypothetical protein Shewana3_0688 804136 - 804576 + | hypothetical protein Shewana3_0689 805824 - 804742 - | DegS serine peptidase TERM 963 805768 - 805756 - G 91 -7.7 -5.1963 | TGTAACTAACAAAAA CATGG CCG CCATG ATAAGGCCGAAGAGC TERM 964 805904 - 805879 - R 100 -16.3 -3.85389 | opp_overlap 805884 GTTTAACAAGTTAAA GCATAGGGAAC CCGC GTTCCCTATGC TGATCCGCATCTGAT Shewana3_0690 807302 - 805950 - | peptidase Do TERM 965 806180 - 806204 + g 86 -8.5 -4.72386 | GCGAGGCACCTTGTA GCATTGGGTGC ACA GCACCTGCTGC TTTTTCAGTGGTTTG TERM 966 807157 - 807137 - G 78 -12.5 -2.87132 | overlap 807150 CGTGCGTGCCAGATA CCGCCACGG AAA CCACGGCGG GCGTCGTGCGCTCTA TERM 967 807519 - 807531 + H 73 -5.5 -4.66953 | overlap 807522 TAAGTGAAACCTGTG GGCTT TTA AGGCC TTTTTCAAGTCTTAA TERM 968 808506 - 808486 - g 70 -9.1 -3.57144 | CCCCCGAGGCTGAAA TTTCAACCG ATG CGATTGAAA TCGAAGGGCGCGCAA Shewana3_0691 807705 - 808871 + | AFG1 family ATPase rplM 809168 - 809596 + | 50S ribosomal protein L13 rpsI 809611 - 810003 + | 30S ribosomal protein S9 TERM 969 810019 - 810048 + F 93 -12.3 -3.07994 | opp_overlap 810026, overlap 810026 TACGTTTTGGAATCT CAAAAAACCCAGC TTAT GCTGGGTTTTTTA TTGCCTAAAATTGGC TERM 970 810041 - 810026 - f 100 -10.4 -5.09426 | opp_overlap 810019 810026 TGGAATCTCAAAAAA CCCAGC TTAT GCTGGG TTTTTTATTGCCTAA TERM 971 810026 - 810041 + F 100 -10.4 -5.4833 | opp_overlap 810026, overlap 810019 TGGAATCTCAAAAAA CCCAGC TTAT GCTGGG TTTTTTATTGCCTAA Shewana3_0694 810117 - 810305 + | hypothetical protein Shewana3_0695 810372 - 811667 + | adenylosuccinate synthetase TERM 972 811698 - 811672 - f 76 -10.8 -2.54881 | opp_overlap 811677, overlap 811639 811671 811670 CATTTAACTAAAATC GTAGAGGCCGTG TTC CACGGCCTTTTC TTCCTTTGTTGTGCC TERM 973 811677 - 811693 + F 100 -13.7 -4.88407 | opp_overlap 811672 811671 811670 AACTAAAATCGTAGA GGCCGTG TTC CACGGCC TTTTCTTCCTTTGTT Shewana3_0696 811776 - 812432 + | Sel1 domain-containing protein TERM 974 812937 - 812960 + G 71 -7.4 -4.05714 | GCCATTGTGGGGCGA TTCCATGTCG ATAG CGGCATGGCA TTTGTGATTGCCGAT TERM 975 813683 - 813705 + G 71 -6.2 -4.42806 | overlap 813687 TGAAGCGCTATTCCC GCATCTGCAA TGT TTGCAGTCGC TTTATTTGGCGCTCG TERM 976 814870 - 814853 - g 76 -3.4 -5.15117 | GAAAAGCGTAAAAAA TTCGGC GAAAAA GCCAAA GGCCGCGAAGCGGAG Shewana3_0697 812472 - 814901 + | RNAse R Shewana3_0698 814902 - 815642 + | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 977 815657 - 815686 + T 100 -16.7 -3.50572 | opp_overlap 815664, overlap 815664 ATTGATAGCTTTCAA TAAAAAAGACGGG CTAG CCCGTCTTTTTTA TTGTCTCGAATAACT TERM 978 815664 - 815679 + T 100 -10.4 -5.60689 | opp_overlap 815664, overlap 815657 GCTTTCAATAAAAAA GACGGG CTAG CCCGTC TTTTTTATTGTCTCG TERM 979 815679 - 815664 - T 100 -10.4 -5.4505 | opp_overlap 815657 815664 GCTTTCAATAAAAAA GACGGG CTAG CCCGTC TTTTTTATTGTCTCG Shewana3_0699 817136 - 815712 - | major facilitator transporter Shewana3_0700 818073 - 817318 - | hypothetical protein rpsF 818286 - 818681 + | 30S ribosomal protein S6 Shewana3_0702 818705 - 818995 + | primosomal replication protein N rpsR 819007 - 819234 + | 30S ribosomal protein S18 rplI 819271 - 819723 + | 50S ribosomal protein L9 TERM 980 819769 - 819742 - T 80 -11.4 -2.73159 | opp_overlap 819748, overlap 819748 CCAACTGCTTTAAAT GAAAAACACCGC TTCG GCGGTGTTTTTT TATGGGCGCGATTTA TERM 981 819763 - 819748 - T 100 -10.4 -4.98531 | opp_overlap 819748, overlap 819742 GCTTTAAATGAAAAA CACCGC TTCG GCGGTG TTTTTTTATGGGCGC TERM 982 819748 - 819763 + T 100 -10.4 -5.60993 | opp_overlap 819748 819742 GCTTTAAATGAAAAA CACCGC TTCG GCGGTG TTTTTTTATGGGCGC Shewana3_0705 821119 - 819881 - | small GTP-binding protein Shewana3_0706 822182 - 821103 - | biotin synthase Shewana3_0707 822820 - 822182 - | hypothetical protein thiH 824260 - 822821 - | thiamine biosynthesis protein ThiH TERM 983 823164 - 823178 + g 73 -2.8 -4.98061 | CCAAGGCTAAATTGT TCGGCA TCG TGTTGA TTTTGTTTGCTGTCT TERM 984 824292 - 824322 + r 74 -10.4 -2.57781 | opp_overlap 824294, overlap 824303 GAATATGAATGCAGA AATGCGGCAGTTGT TGA GCAACTGCCGCAGA TGACTTAGCTATTTG TERM 985 824320 - 824294 - R 100 -16.7 -3.99228 | opp_overlap 824292 824303 ATATGAATGCAGAAA TGCGGCAGTTG TTGAG CAACTGCCGCA GATGACTTAGCTATT Shewana3_0709 825014 - 824331 - | formate dehydrogenase gamma subunit Shewana3_0710 825348 - 825028 - | iron hydrogenase, small subunit TERM 986 825141 - 825153 + g 80 -4.8 -5.09225 | overlap 825134 CTACCGCGGGGTTGG CGTG GCTAA CACG TTTTTTCGCTAGGCT Shewana3_0711 826593 - 825361 - | response regulator receiver protein TERM 987 825889 - 825909 + g 73 -3.2 -5.03314 | overlap 825890 CCAAGCCGAGTTAAA TTCGGGGC GTGAG GCTTCGAG TTTTTTCGAGGTACA TERM 988 826320 - 826339 + g 70 -2.8 -4.82901 | opp_overlap 826323, overlap 826323 GCACGGCAGGGGCGA TAATGCCG ACGA CGGTAGTA TTTTTATCGGCGAGC TERM 989 826662 - 826682 + r 70 -9.7 -2.51186 | overlap 826661 TGTATTTATTTAGCA GCTTATGCC TCG GGCAAAAGC GTATTGGTAAGTTTT TERM 990 827138 - 827113 - R 100 -12.7 -5.79595 | opp_overlap 827113 GCTTAAAATAAAAAA CCGTCCAAAGA TTAT TCTTTGAACGG TTTTTAAATATGCTT TERM 991 827113 - 827138 + r 100 -10.5 -4.72333 | opp_overlap 827113 GCTTAAAATAAAAAA CCGTCCAAAGA TTAT TCTTTGAACGG TTTTTAAATATGCTT Shewana3_0712 829428 - 827230 - | dipeptidyl-peptidase 7 TERM 992 827578 - 827601 + g 81 -6.1 -5.01732 | gap 1, opp_overlap 827577, overlap 827590 GTGATCGCCAAAACG CTGCTC-ATG AATCG CATCGAGCAG TTTTTTCGGAGCGTT TERM 993 830405 - 830395 - g 76 -6.8 -4.58773 | TCGACCAAACTAAAA TCCG TAC CGGA CAACTGGATGATGAG Shewana3_0713 829554 - 830960 + | primary replicative DNA helicase alr 831036 - 832112 + | alanine racemase TERM 994 832150 - 832135 - T 100 -11.8 -4.43681 | opp_overlap 832135 GAGTGAATACCAAAA CGGCGC ATTT GCGCCG TTTTTTTTGCCCTGA TERM 995 832135 - 832150 + T 100 -11.8 -5.78622 | opp_overlap 832135 GAGTGAATACCAAAA CGGCGC ATTT GCGCCG TTTTTTTTGCCCTGA Shewana3_0715 832746 - 832282 - | putative chemotaxis protein CheX TERM 996 834810 - 834825 + G 77 -10.4 -3.5241 | opp_overlap 834809 834808 834820, overlap 834808 CAGTACTTTATAAGC CTGCCG AAAA CGGCAG TATTTATGCCGCGTG TERM 997 835028 - 835015 - g 70 -2.4 -4.94992 | CCAAATCGAGAAAAA CAAC GCTCGG GTTG CGACCTCTGGCGATC Shewana3_0716 833315 - 835510 + | TonB-dependent siderophore receptor TERM 998 835534 - 835551 + F 100 -12.7 -4.05181 | overlap 835528 AATCGAGATCTGAAT GGCAGCC CTAG GGCTGCC TTTGATGTTTATGCT Shewana3_0717 835586 - 836260 + | putative hydroxylase TERM 999 836350 - 836373 + F 100 -9.7 -5.36364 | opp_overlap 836350 TGAGGGGCAACAAAA CAGTAAACG TTAACT CGTTTACTG TTTTTGTATTTTTAC TERM 1000 836373 - 836350 - f 100 -9.7 -4.64676 | opp_overlap 836350 TGAGGGGCAACAAAA CAGTAAACG TTAACT CGTTTACTG TTTTTGTATTTTTAC TERM 1001 836411 - 836429 + F 72 -7.4 -3.95073 | CTGCATTGCTCATCA GCGGCTTA AAT TAAGGCGC TTTATCCCTCTAAGC Shewana3_0718 836488 - 837492 + | tRNA-dihydrouridine synthase A Shewana3_0719 837704 - 837997 + | hypothetical protein Shewana3_0720 838143 - 838343 + | phage shock protein C, PspC TERM 1002 838450 - 838433 - T 70 -7.7 -3.7282 | gap 1 GGATGCTATCAACAA GAGGG-CG CAT CGACCCTC ATGCCAATAGTGAAC TERM 1003 838475 - 838485 + T 70 -5.4 -4.56597 | opp_overlap 838465 GTGAACACTGTTTAA GTGA GCA TCAC TTTTTAAGAAAAGCC Shewana3_0721 839219 - 838482 - | enoyl-CoA hydratase Shewana3_0722 839254 - 839736 + | hypothetical protein TERM 1004 840543 - 840530 - g 84 -2.3 -5.63236 | overlap 840531 ATTGAAAAAGAAAAA TGCTG AGGT CAGCC TGAAACAGATCATTC Shewana3_0723 839748 - 840716 + | hypothetical protein Shewana3_0724 840761 - 841456 + | hypothetical protein TERM 1005 841472 - 841520 + T 100 -12.6 -3.42378 | opp_overlap 841447 841474 841477 841489, overlap 841474 841475 841489 GCGCTAGCGCTAATG AATCAGCCATAAAAAAACCGCC ATTAA GGCGGTTTTTTTATGGGAGGTA TTGCTATCTTATTCG TERM 1006 841518 - 841474 - T 100 -13 -3.34895 | opp_overlap 841474 841472 841475 841489, overlap 841447 841477 841489 GCTAGCGCTAATGAA TCAGCCATAAAAAAACCGCC ATTAA GGCGGTTTTTTTATGGGAGG TATTGCTATCTTATT TERM 1007 841474 - 841518 + T 100 -15.2 -3.27149 | opp_overlap 841447 841474 841477 841489, overlap 841472 841475 841489 GCTAGCGCTAATGAA TCAGCCATAAAAAAACCGCC ATTAA GGCGGTTTTTTTATGGGAGG TATTGCTATCTTATT TERM 1008 841475 - 841517 + T 100 -16.5 -2.55205 | opp_overlap 841447 841474 841477 841489, overlap 841474 841472 841489 CTAGCGCTAATGAAT CAGCCATAAAAAAACCGCC ATTAA GGCGGTTTTTTTATGGGAG GTATTGCTATCTTAT TERM 1009 841515 - 841477 - T 100 -17.7 -2.84276 | opp_overlap 841475 841474 841472 841489, overlap 841474 841489 AGCGCTAATGAATCA GCCATAAAAAAACCGCC ATTAA GGCGGTTTTTTTATGGG AGGTATTGCTATCTT TERM 1010 841489 - 841503 + T 100 -8.5 -5.60993 | opp_overlap 841477 841474 841489, overlap 841475 841474 841472 TCAGCCATAAAAAAA CCGCC ATTAA GGCGG TTTTTTTATGGGAGG TERM 1011 841503 - 841489 - T 100 -8.5 -5.64274 | opp_overlap 841489 841475 841474 841472, overlap 841477 841474 TCAGCCATAAAAAAA CCGCC ATTAA GGCGG TTTTTTTATGGGAGG tolC 842836 - 841529 - | outer membrane channel protein TERM 1012 842873 - 842858 - H 76 -7.6 -4.08706 | opp_overlap 842857 TCCTTATTAGACAAA TTCTCC CAAA GGAGAA ATATGTAACTTCGTT Shewana3_0726 843080 - 843691 + | nucleoside diphosphate pyrophosphatase Shewana3_0727 843684 - 844136 + | hypothetical protein Shewana3_0728 844152 - 844991 + | calcineurin phosphoesterase C-terminal domain-containing protein Shewana3_0729 845018 - 845593 + | hypothetical protein TERM 1013 847315 - 847287 - g 70 -11.1 -2.53831 | overlap 847286 847285 847289 GGCTGAAAAAGAAGG TATTCTCGACCGT ATT ACTGCCGAGAATA AAAAGGGTAAGGTCC Shewana3_0730 845650 - 847536 + | DNA topoisomerase IV subunit B TERM 1014 847955 - 847965 + G 76 -5.4 -4.78753 | opp_overlap 847955 GTCGCGACTGAAAAC CGTA TCG TACG TTTTATTGATATTGA Shewana3_0731 847589 - 848764 + | L-sorbosone dehydrogenase, putative TERM 1015 849043 - 849053 + G 79 -6.8 -4.68705 | AGGCTATGGTACTGA TGGC GCA GCCA TTTTCTTACCGTTAT Shewana3_0732 848757 - 851033 + | DNA topoisomerase IV subunit A TERM 1016 851109 - 851075 - T 100 -17.4 -3.28745 | opp_overlap 851080, overlap 851080 GTCGCAACAAGTTAA TAAAAGCCACTCAAGT GTC ACTTGAGTGGCTTTTT TATGACAATCACTCA TERM 1017 851080 - 851104 + T 100 -17.3 -5.252 | opp_overlap 851075 851080 AACAAGTTAATAAAA GCCACTCAAGT GTC ACTTGAGTGGC TTTTTTATGACAATC TERM 1018 851104 - 851080 - T 100 -17.3 -4.74539 | opp_overlap 851080, overlap 851075 AACAAGTTAATAAAA GCCACTCAAGT GTC ACTTGAGTGGC TTTTTTATGACAATC TERM 1019 851157 - 851174 + T 100 -11.3 -5.11613 | opp_overlap 851157 TGAGGTATAAAAAAA CCTACCG CAAG CGGTAGG TTTTTTCGCTAATAT TERM 1020 851174 - 851157 - T 100 -11.3 -5.64274 | opp_overlap 851157 TGAGGTATAAAAAAA CCTACCG CAAG CGGTAGG TTTTTTCGCTAATAT Shewana3_0733 852284 - 851205 - | porin TERM 1021 851627 - 851637 + g 71 -5.4 -4.49756 | opp_overlap 851627, overlap 851620 TGTTGTAAGCAACAG CTAC ATA GTAG TTTTGCTCTTTGAAC TERM 1022 851918 - 851938 + g 70 -4.7 -4.60041 | opp_overlap 851922 TGTCATTACGACCGA CTAATACAG TAC CTGCATTGG TTTTTAAACCTAAGT TERM 1023 852316 - 852328 + r 71 -3.4 -5.06585 | AACCTAAGTTCTTTT CCAT TTTTC ATGG TTTTTGTGTGGTTTA TERM 1024 852679 - 852652 - R 100 -15.8 -3.62616 | opp_overlap 852659, overlap 852659 TAGTATGAGATACAA TAAAAAAGCGGC CAAA GCCGCTTTTTTA TCAAATATTATCTGT TERM 1025 852672 - 852659 - R 100 -9.5 -5.62045 | opp_overlap 852659, overlap 852652 AGATACAATAAAAAA GCGGC CAAA GCCGC TTTTTTATCAAATAT TERM 1026 852659 - 852672 + r 100 -9.5 -5.26918 | opp_overlap 852659 852652 AGATACAATAAAAAA GCGGC CAAA GCCGC TTTTTTATCAAATAT Shewana3_0734 853779 - 852715 - | porin Shewana3_0735 854196 - 855029 + | UBA/THIF-type NAD/FAD binding protein TERM 1027 855095 - 855066 - T 86 -7.9 -4.66833 | opp_overlap 855071, overlap 855071 TCTCAAGGTTAAAAA CTAAATCCACAGC CAAT GCTGTGGATTTTT GTTTAGTGGCACCAG TERM 1028 855090 - 855071 - T 100 -12.2 -4.32649 | opp_overlap 855071, overlap 855066 AGGTTAAAAACTAAA TCCACAGC CAAT GCTGTGGA TTTTTGTTTAGTGGC TERM 1029 855071 - 855090 + T 100 -12.2 -5.33405 | opp_overlap 855071 855066 AGGTTAAAAACTAAA TCCACAGC CAAT GCTGTGGA TTTTTGTTTAGTGGC Shewana3_0736 856803 - 855172 - | ATPase domain-containing protein TERM 1030 855686 - 855701 + g 76 -6.8 -4.4874 | TGTTCTTCGTGGCTA CGGTCG ATGG CGATCG TTTTAAATTTTTGGA Shewana3_0737 856972 - 857583 + | hypothetical protein TERM 1031 857652 - 857632 - T 100 -14.1 -5.29782 | CACAGGCACAAAAAA TGGGGGTTA GAT TAACCCCCA TAACAACGTGCAATT Shewana3_0738 857835 - 857704 - | hypothetical protein Shewana3_0739 858135 - 859724 + | methyl-accepting chemotaxis sensory transducer TERM 1032 859922 - 859902 - T 76 -10.5 -2.90714 | overlap 859904 TGAAATCGGTAGACA CAGTGGATT CAA AATCCACCG CCCTTAAAAGCGTGA TERM 1033 859920 - 859904 - T 71 -9.5 -3.00215 | overlap 859902 AAATCGGTAGACACA GTGGATT CAA AATCCAC CGCCCTTAAAAGCGT TERM 1034 859998 - 859984 - T 72 -7.8 -3.83169 | opp_overlap 859984 TACAAAGGGACTAAA CCGACC TAG AGTCGG TTTTTTTGTATCTAA TERM 1035 859984 - 859998 + T 100 -7.1 -5.76633 | opp_overlap 859984 TACAAAGGGACTAAA CCGAC CTAGA GTCGG TTTTTTTGTATCTAA TERM 1036 860102 - 860116 + T 70 -7.2 -3.80841 | CACTCTGCACATACC GATCTA GGT TAGATC TTTAATCGTCGTGGT Shewana3_0740 860437 - 860105 - | hypothetical protein modC 861764 - 860679 - | molybdate transporter ATP-binding protein TERM 1037 861350 - 861365 + g 71 -5.4 -4.56597 | TGAGCAGGGCGCGGC CAATGG CGAC CCGTTG TTTTTCACCGCCAGA modB 862495 - 861758 - | molybdate ABC transporter permease protein TERM 1038 861865 - 861851 - G 73 -11.4 -2.98223 | opp_overlap 861850 861853, overlap 861822 861853 TATCGAGATGATACA CAGGCG CAT CGCCTG ATATTCCGCCCCCGG Shewana3_0743 863280 - 862495 - | molybdenum ABC transporter, periplasmic molybdate-binding protein Shewana3_0744 863483 - 864262 + | ModE family transcriptional regulator Shewana3_0745 865460 - 864279 - | putative iron-sulfur cluster binding protein TERM 1039 864732 - 864706 - G 70 -8.6 -3.73224 | CGATTGCCCATCAAA GGGCGAAACTCC TCT GGAATAGCGCCC TGTAACTCGATTGTC Shewana3_0746 865618 - 866445 + | extracellular solute-binding protein Shewana3_0747 868389 - 866449 - | diguanylate cyclase TERM 1040 867051 - 867067 + g 78 -5.9 -4.83169 | TGAGTAGTAGGATGA TAAGTTG CAG CGACTTA TTTTTCTCGAGCAGT Shewana3_0748 868504 - 869031 + | phosphoesterase, PA-phosphatase related Shewana3_0749 869056 - 869490 + | hypothetical protein TERM 1041 869500 - 869547 + T 100 -18 -3.00923 | opp_overlap 869509 869515, overlap 869515 CCTTAAGCTGTGAGT TTGACCCAATAAAAAGCCCGTC GATT GACGGGCTTTTTATTGGAATAA TGTCTGATATTAGAA TERM 1042 869538 - 869509 - T 100 -18.1 -3.06183 | opp_overlap 869500 869515, overlap 869515 GTGAGTTTGACCCAA TAAAAAGCCCGTC GATT GACGGGCTTTTTA TTGGAATAATGTCTG TERM 1043 869532 - 869515 - T 100 -12.7 -5.10461 | opp_overlap 869500 869515, overlap 869509 TTGACCCAATAAAAA GCCCGTC GATT GACGGGC TTTTTATTGGAATAA TERM 1044 869515 - 869532 + T 100 -12.7 -5.08601 | opp_overlap 869515 869509, overlap 869500 TTGACCCAATAAAAA GCCCGTC GATT GACGGGC TTTTTATTGGAATAA Shewana3_0750 871245 - 869557 - | malate dehydrogenase TERM 1045 870788 - 870809 + g 76 -2.9 -5.18355 | AAGCCTAAGATGCGC TCACCGTCG GTCA CAACGATGA TTTTTACTTTTTGGC TERM 1046 871350 - 871361 + r 75 -2.2 -5.40072 | TTGCCTGTGTCGTGC GCTA TTTG TGGC TTTTTTTGCAGCAGG TERM 1047 871493 - 871464 - R 100 -11.5 -4.25848 | opp_overlap 871471, overlap 871471 AAGGTGCTATTAAAA CAAAAAACGCAGC CTAG GCTGCGTTTCTGG AATAAAGCTGTTTAG TERM 1048 871486 - 871471 - R 100 -10.4 -5.83211 | opp_overlap 871471, overlap 871464 TATTAAAACAAAAAA CGCAGC CTAG GCTGCG TTTCTGGAATAAAGC TERM 1049 871471 - 871486 + r 86 -10.4 -3.89346 | opp_overlap 871471 871464 TATTAAAACAAAAAA CGCAGC CTAG GCTGCG TTTCTGGAATAAAGC Shewana3_0751 871982 - 871512 - | hypothetical protein TERM 1050 872112 - 872086 - R 100 -21 -2.85847 | opp_overlap 872086, overlap 872073 AAGTGGCACAGTAGA GCATGAGCCCTC GCT GAGGGCTCATGC TTAAATGAGTAAAAC TERM 1051 872086 - 872112 + r 100 -21 -3.07816 | opp_overlap 872086 872073 AAGTGGCACAGTAGA GCATGAGCCCTC GCT GAGGGCTCATGC TTAAATGAGTAAAAC Shewana3_0752 873413 - 872127 - | putative manganese transporter TERM 1052 872188 - 872174 - G 70 -4.3 -4.652 | AAAGCACTGCAAAAA TAAGC AAATA GCTTA ATCCTATCCAAGAGA Shewana3_0753 874039 - 873497 - | membrane-flanked domain-containing protein TERM 1053 874271 - 874292 + G 74 -9.5 -3.54307 | TCTACCCAGTGCTTG TGCTATTGC GATC GCAATGGCA TTTGCCCCGAGTATT TERM 1054 874913 - 874901 - g 76 -6.3 -4.63527 | opp_overlap 874911, overlap 874906 CGATTATTTTAAAAA CGATA CCT TATCG GCAACCGATTTGGGC TERM 1055 875060 - 875071 + G 73 -5.8 -4.48299 | overlap 875056 CGATCGTGCAACGGC CAGC GGCA GCTG TTTATTTGACTATGG Shewana3_0754 874239 - 876824 + | TonB-dependent receptor TERM 1056 876866 - 876851 - f 100 -11.8 -3.84825 | opp_overlap 876851 TTGAGTCATAGGAAA CGGCGC TTCG GCGCCG TTTTTGTATTTTACT TERM 1057 876851 - 876866 + F 100 -11.8 -5.30339 | opp_overlap 876851 TTGAGTCATAGGAAA CGGCGC TTCG GCGCCG TTTTTGTATTTTACT Shewana3_0755 876942 - 877571 + | glutathione S-transferase domain-containing protein TERM 1058 877625 - 877593 - T 100 -13.6 -5.33866 | opp_overlap 877598, overlap 877598 CAAAGCGATAAAAAA CAAAAGGGCAGAAG ATTTA CTTCTGCCCTTTTT GCTTAAATCCTTAGG TERM 1059 877598 - 877620 + T 100 -13.5 -4.88407 | opp_overlap 877598 877593 CGATAAAAAACAAAA GGGCAGAAG ATTTA CTTCTGCCC TTTTTGCTTAAATCC TERM 1060 877620 - 877598 - T 100 -13.5 -5.49579 | opp_overlap 877598, overlap 877593 CGATAAAAAACAAAA GGGCAGAAG ATTTA CTTCTGCCC TTTTTGCTTAAATCC TERM 1061 877657 - 877675 + T 70 -8.1 -3.5936 | gap 1 GTTTATAGCTGAGTC GCCGC-CC ATTT GGAGCGGC TTTCACGGCTTTCGC Shewana3_0756 878144 - 877644 - | hypothetical protein Shewana3_0757 878593 - 878186 - | hypothetical protein TERM 1062 878774 - 878742 - R 100 -12.2 -5.26316 | gap 1 TTACGCCATAAAAAA GCGCTGG-TATCTGT TTTC ACAAATAGCCAGCGC AACAGTGGAAGTGGT Shewana3_0758 879613 - 878828 - | hypothetical protein TERM 1063 879743 - 879778 + r 75 -7.5 -4.35339 | opp_overlap 879748, overlap 879739 879748 ATTTTTCCTGCCTAA AAAAATGGCGCCGCT ATAGTG AGCGGCGCCATTGGG TTTGTTGATTACTAT TERM 1064 879748 - 879773 + r 100 -16.2 -3.39434 | opp_overlap 879748, overlap 879743 879739 TCCTGCCTAAAAAAA TGGCGCCGCT ATAGTG AGCGGCGCCA TTGGGTTTGTTGATT TERM 1065 879773 - 879748 - R 100 -16.2 -5.40072 | opp_overlap 879748 879743 879739 TCCTGCCTAAAAAAA TGGCGCCGCT ATAGTG AGCGGCGCCA TTGGGTTTGTTGATT Shewana3_0759 881895 - 879811 - | peptidase M13 Shewana3_0760 882233 - 882940 + | ribosomal small subunit pseudouridine synthase A TERM 1066 882949 - 882991 + T 100 -17.9 -4.89339 | opp_overlap 882960, overlap 882960 GATTTAACACCGTTT GGCTAAAAAAATGCCGCTC CTGAT GAGCGGCATTTTTATTGCC TTTTTATCGCTGATT TERM 1067 882980 - 882960 - T 100 -12.6 -5.40072 | opp_overlap 882949 882960 GTTTGGCTAAAAAAA TGCCGCTC CTGAT GAGCGGCA TTTTTATTGCCTTTT TERM 1068 882960 - 882980 + T 100 -12.6 -5.17507 | opp_overlap 882960, overlap 882949 GTTTGGCTAAAAAAA TGCCGCTC CTGAT GAGCGGCA TTTTTATTGCCTTTT Shewana3_0761 883980 - 883024 - | hypothetical protein TERM 1069 883145 - 883156 + g 86 -5.8 -5.0925 | CTTTGTGGCACATCT TGGC TCAA GCCA TTTTTGATTTTGCCA TERM 1070 883689 - 883715 + g 76 -5.9 -4.69326 | gap 1 GTTTTGAGCCGTTGT TGTCACTGCCAT TATA GTGGC-GTGGCA TTTTATCTTCGATAT Shewana3_0762 884555 - 883977 - | hypothetical protein Shewana3_0763 885088 - 884555 - | ECF subfamily RNA polymerase sigma-24 factor Shewana3_0764 885489 - 887351 + | methyl-accepting chemotaxis sensory transducer TERM 1071 887374 - 887389 + T 95 -6 -5.60993 | opp_overlap 887374 TTTGTCTGTCAGAAA CGCACC TTAG GGGGCG TTTTTTTATGGCGAA TERM 1072 887520 - 887491 - T 100 -14.5 -3.2946 | opp_overlap 887498, overlap 887498 AATAAAATCCACCAA CAAAAAACGCACC CTAA GGTGCGTTTTTTA TGCAAAGCGCCGCGA TERM 1073 887513 - 887498 - T 100 -10.4 -5.5112 | opp_overlap 887498, overlap 887491 TCCACCAACAAAAAA CGCACC CTAA GGTGCG TTTTTTATGCAAAGC TERM 1074 887498 - 887513 + T 100 -10.4 -5.24129 | opp_overlap 887498 887491 TCCACCAACAAAAAA CGCACC CTAA GGTGCG TTTTTTATGCAAAGC Shewana3_0765 888483 - 887536 - | ribose-phosphate pyrophosphokinase TERM 1075 887754 - 887769 + g 71 -6.8 -4.19577 | opp_overlap 887754 887752, overlap 887740 TCGCGTAAGCAAATA CGCGGT TTGC ACCGTG TTCTTTTAAGGCTTC Shewana3_0766 889450 - 888596 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Shewana3_0767 890096 - 889452 - | outer membrane lipoprotein LolB TERM 1076 890448 - 890433 - g 71 -6.2 -4.36914 | TCTCTCCGGACAAAA TTCATG ATGC CATGAA GAGTCTGGCCAGTCG hemA 890351 - 891601 + | glutamyl-tRNA reductase TERM 1077 892487 - 892476 - g 76 -7.2 -4.4261 | overlap 892477 CGTTGAAGACGAAAA GCGC CGCA GCGC CGAAGAGTCGACTCG prfA 891616 - 892707 + | peptide chain release factor 1 TERM 1078 892771 - 892800 + G 79 -8.6 -4.34947 | overlap 892795 TTCAGCTAGCGCCTA CCTCTGAATCCG CCCATC TGGATGCAGAGG TTTTCCTGCTGTATT Shewana3_0770 892710 - 893570 + | HemK family modification methylase TERM 1079 893630 - 893600 - T 79 -6.9 -4.61566 | opp_overlap 893603, overlap 893603 CCGCAAAGCACAAAA CAACGCCATTGGT TATTT ATCAATGGCGTTT TTGTTTGTGTATTGG TERM 1080 893627 - 893603 - T 82 -8.6 -4.40732 | opp_overlap 893603, overlap 893600 CAAAGCACAAAACAA CGCCATTGGT TATTT ATCAATGGCG TTTTTGTTTGTGTAT TERM 1081 893603 - 893627 + T 100 -10.8 -5.4433 | opp_overlap 893603 893600 CAAAGCACAAAACAA CGCCATTGGT TATTT ATCAATGGCG TTTTTGTTTGTGTAT Shewana3_0771 894129 - 893716 - | pantoate--beta-alanine ligase Shewana3_0772 894248 - 894643 + | invasion gene expression up-regulator, SirB TERM 1082 894816 - 894793 - g 79 -12.5 -3.14344 | opp_overlap 894792 894791 894789 894795 TACCTGGTGGATCAA CAGCAACGC TTAAAT GCGTTGCTG CATTGGTTTTATCAG Shewana3_0773 894643 - 895431 + | hypothetical protein TERM 1083 895437 - 895463 + F 100 -13.8 -4.56597 | opp_overlap 895440, overlap 895440 CTATCACTAAATCTT AAAGGAGAGCCT AAC AGGCTCTCCTTG TTTTTCAAAAAAACA TERM 1084 895440 - 895460 + F 100 -15.5 -4.40561 | opp_overlap 895440, overlap 895437 TCACTAAATCTTAAA GGAGAGCCT AAC AGGCTCTCC TTGTTTTTCAAAAAA TERM 1085 895460 - 895440 - f 100 -15.5 -3.73107 | opp_overlap 895440 895437 TCACTAAATCTTAAA GGAGAGCCT AAC AGGCTCTCC TTGTTTTTCAAAAAA TERM 1086 895515 - 895527 + F 71 -4.8 -4.62783 | opp_overlap 895515 AAGTTTGCCCACTAA CTGC AAACG GCAG TTTTTAGCATAAATA Shewana3_0774 895576 - 896823 + | hypothetical protein Shewana3_0775 896881 - 897729 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 1087 897743 - 897789 + F 100 -15.4 -2.54745 | opp_overlap 897757, overlap 897757 AAGCTTGGTTTAACC TTATCAACTAAAAAGCCCCGAA TCG TTCGGGGCTTTTTATTGGGTGA AATTTTCTCCATAGC TERM 1088 897775 - 897757 - f 100 -14.6 -4.90266 | opp_overlap 897743 897757 CTTATCAACTAAAAA GCCCCGAA TCG TTCGGGGC TTTTTATTGGGTGAA TERM 1089 897757 - 897775 + F 100 -14.6 -5.10461 | opp_overlap 897757, overlap 897743 CTTATCAACTAAAAA GCCCCGAA TCG TTCGGGGC TTTTTATTGGGTGAA Shewana3_0776 897893 - 898765 + | hypothetical protein TERM 1090 900285 - 900267 - g 79 -9 -4.15565 | TGGATTACCTTAAAA TCGATAAA TGC TTTATCGA TACCATAGGCCAAGA Shewana3_0777 898940 - 900499 + | EAL domain-containing protein TERM 1091 900503 - 900537 + T 76 -7.9 -4.07687 | gap 1, opp_overlap 900504 900507, overlap 900504 900507 GAGCATAACTAGTTA ATAACCGTCA-GGGCA GATA TGCCCCTGACGGTCAG TTTTGCGAGGCGAGT TERM 1092 900504 - 900536 + T 83 -11.4 -3.04398 | gap 1, opp_overlap 900504 900507, overlap 900503 900507 AGCATAACTAGTTAA TAACCGTCA-GGGCA GATA TGCCCCTGACGGTCA GTTTTGCGAGGCGAG TERM 1093 900536 - 900504 - T 100 -13.6 -3.15231 | gap 1, opp_overlap 900504 900503 900507, overlap 900507 AGCATAACTAGTTAA TAACCGTCA-GGGCA GATA TGCCCCTGACGGTCA GTTTTGCGAGGCGAG TERM 1094 900507 - 900533 + T 91 -13.1 -2.74605 | gap 1, opp_overlap 900504 900507, overlap 900504 900503 ATAACTAGTTAATAA CCGTCA-GGGCA GATA TGCCCCTGACGG TCAGTTTTGCGAGGC TERM 1095 900533 - 900507 - T 100 -13.1 -3.71255 | gap 1, opp_overlap 900507 900504 900503, overlap 900504 ATAACTAGTTAATAA CCGTCA-GGGCA GATA TGCCCCTGACGG TCAGTTTTGCGAGGC Shewana3_0778 901954 - 900554 - | ammonium transporter Shewana3_0779 902289 - 901951 - | nitrogen regulatory protein P-II Shewana3_0780 903568 - 902585 - | 2-dehydropantoate 2-reductase Shewana3_0781 903930 - 903568 - | VanZ family protein TERM 1096 903645 - 903635 - G 74 -4.6 -4.80487 | CAGAAGTAAAACAAA GCGA TAC CCGC AAAGTCCGCTAACAC Shewana3_0782 904093 - 904578 + | nucleotide-binding protein TERM 1097 904664 - 904639 - T 75 -7.5 -4.27259 | opp_overlap 904639 GATAGACACTTAAAA GCCCCTTGC TATCAAAG GCGAGGGGC TTTTTTATTACTTAG TERM 1098 904639 - 904664 + T 100 -10.4 -5.5604 | opp_overlap 904639 GATAGACACTTAAAA GCCCCTTGCT ATCAAA GGCGAGGGGC TTTTTTATTACTTAG Shewana3_0783 906067 - 904676 - | major facilitator transporter TERM 1099 905100 - 905088 - G 71 -10.5 -3.09823 | overlap 905083 CGGGCTAAAAGGATA CCGCC GAA GGCGG CGCCAACTAAGGTCA TERM 1100 905264 - 905251 - G 70 -3.1 -4.78029 | gap 1, opp_overlap 905254 GCAATAAAATCAAAA TGG-CG CTG CGACCA TAGCGTTTAAAAAAG TERM 1101 905597 - 905607 + g 73 -3.2 -5.0133 | overlap 905588 905586 ATAGGCGGCGGCAAG TGCG GCC TGCA TTTTTTCGGGGGCTG TERM 1102 906201 - 906184 - R 100 -7.7 -5.79595 | opp_overlap 906184 GCTGAAAATAAAAAA GACCCAG CAAG CTGAGTC TTTAGCGAGTGTATT Shewana3_0784 906539 - 906219 - | hypothetical protein TERM 1103 906467 - 906441 - G 73 -10.2 -3.24232 | overlap 906437 TGTGTCCCAAAGATA GAGCTGGACTTC ATG GAAATCGAGCTC GTCACTCAAAAATGC Shewana3_0785 907196 - 906609 - | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 1104 906686 - 906709 + g 77 -13.2 -2.52795 | AATTGAGTTTTGCAT TGGTCGTGGT CTCG ACCACGGCCA TGGCTTCCAGCACTT Shewana3_0786 907808 - 907230 - | hypothetical protein Shewana3_0787 907993 - 908496 + | OmpA-like transmembrane domain-containing protein TERM 1105 908583 - 908596 + F 84 -5.2 -5.31275 | opp_overlap 908583 GTCTGTGTCGATTAA GCGC CTTCGT GCGC TTTTTTATGATCCGC Shewana3_0788 908765 - 909796 + | hypothetical protein TERM 1106 909898 - 909908 + G 83 -3.2 -5.38951 | TGTTGCTGCTGGTAT TGGC TCC GCTA TTTTTTGTCTGCATT TERM 1107 910322 - 910338 + G 74 -3.6 -4.93296 | overlap 910314 GGTGATCTTAGGCTT CGACCC TAATT GGGTGG TTTTTGTGGTACTGC Shewana3_0789 909849 - 910712 + | sterol desaturase family protein TERM 1108 910737 - 910751 + F 74 -10 -3.21806 | overlap 910728 ATACGCGAGCAGTAG CCACTC AAC GAGTGG TTCGCTCTTCATTAA Shewana3_0790 910911 - 911546 + | hypothetical protein Shewana3_0791 911715 - 913112 + | UDP-N-acetylmuramate Shewana3_0792 913115 - 913774 + | aromatic acid decarboxylase Shewana3_0793 913782 - 914312 + | hypoxanthine phosphoribosyltransferase TERM 1109 914352 - 914335 - f 100 -12.7 -3.68351 | opp_overlap 914335 GCGTTATGACTCAAA CTCCCGC CTAG GCGGGAG TTTTGTTTTGTGCCG TERM 1110 914335 - 914352 + F 100 -12.7 -5.18371 | opp_overlap 914335 GCGTTATGACTCAAA CTCCCGC CTAG GCGGGAG TTTTGTTTTGTGCCG Shewana3_0794 914563 - 915501 + | ABC transporter related Shewana3_0795 915498 - 916268 + | ABC-2 type transporter TERM 1111 916295 - 916311 + F 100 -9.5 -4.62475 | GGTTGCATTTTGGAA GGCATAA ATT TTATGCC TTTTCATTTGTGGGT Shewana3_0796 916412 - 916915 + | hypothetical protein TERM 1112 916964 - 916936 - T 100 -13.3 -3.64162 | opp_overlap 916943, overlap 916926 916943 ATGAATTATTTGAAA TAAAAAAGCCGCA AAT TGCGGCTTTTTTT ATCTGAGTTAGCGTT TERM 1113 916943 - 916957 + T 100 -11.4 -5.72616 | opp_overlap 916936 916943 ATTTGAAATAAAAAA GCCGCA AAT TGCGGC TTTTTTTATCTGAGT TERM 1114 916957 - 916943 - T 100 -11.4 -5.64421 | opp_overlap 916943, overlap 916936 ATTTGAAATAAAAAA GCCGCA AAT TGCGGC TTTTTTTATCTGAGT Shewana3_0797 921159 - 916978 - | protease domain-containing protein TERM 1115 919306 - 919321 + g 74 -2.5 -5.07486 | AGCATTATCCCAAGA GCTGT CTTTAA ACGGC TTTTTGTTGAACATG Shewana3_0798 921862 - 921368 - | DNA-binding transcriptional regulator AsnC Shewana3_0799 922602 - 921925 - | ribosomal large subunit pseudouridine synthase A TERM 1116 921981 - 921996 + g 80 -10.4 -3.79251 | TGAACGTCATGCTCT CACCCG TGTA CGGGTG TTTGATGGTGAGCTC Shewana3_0800 922790 - 924706 + | peptidase U32 TERM 1117 924750 - 924725 - f 78 -10.5 -3.25942 | opp_overlap 924725 ACGCCTTCATAGTAA GGGAGCATTGA GCAT TAAATGCTCCC TTTTTTATTGTTTTT TERM 1118 924725 - 924750 + F 100 -10.5 -5.80727 | opp_overlap 924725 ACGCCTTCATAGTAA GGGAGCATTGA GCAT TAAATGCTCCC TTTTTTATTGTTTTT Shewana3_0801 924849 - 925223 + | hypothetical protein TERM 1119 925303 - 925322 + G 91 -9.4 -4.87133 | AGCTTTGGTTTTTTA GGGATAAT ATCA ATTATCCC TTTTATTTCGAAACT Shewana3_0802 925249 - 926001 + | abortive infection protein Shewana3_0803 928281 - 926008 - | MORN repeat-containing protein Shewana3_0804 928427 - 928750 + | cupin 2 domain-containing protein Shewana3_0805 929947 - 928775 - | hypothetical protein TERM 1120 929361 - 929351 - G 76 -8.2 -4.18697 | AAAATGATCGTAAAA GCGC CAG GCGC GAATGCTGTCCCTTA Shewana3_0806 931168 - 930005 - | peptidase M19, renal dipeptidase TERM 1121 930806 - 930796 - G 70 -4.6 -4.64676 | opp_overlap 930773 930796 GGATTTGGAAGAAAA CCGC AGT GCGA TTGCTCTCCCTCGCC TERM 1122 931075 - 931058 - G 74 -9.8 -3.60792 | ACCATCGATATATAA GCGCCG AGAGCG CGGCGC AGCAAGGCTGGAGAA Shewana3_0807 931722 - 931279 - | Fe-S metabolism associated SufE Shewana3_0808 933037 - 931790 - | cysteine desulfurase TERM 1123 933840 - 933826 - g 72 -3.5 -4.77157 | overlap 933831 GGAATTGAGCAAAAA CAGGA GTCTG CCCTG TTAGCGCAGCGAGTT TERM 1124 934279 - 934269 - g 71 -6.8 -4.17048 | GGTGGCCGAAAACAA TCGC GAG GCGA TACTGAAACAGCAGG Shewana3_0809 933343 - 935043 + | methyl-accepting chemotaxis sensory transducer TERM 1125 935073 - 935095 + T 100 -12.8 -4.8543 | opp_overlap 935073 GACATCCATAAAAAA TGCCCAGCTT ATA AAGTTGGGCA TTTTTATGGAGCTTA TERM 1126 935095 - 935073 - T 100 -10.6 -5.29782 | opp_overlap 935073 GACATCCATAAAAAA TGCCCAGCTT ATA AAGTTGGGCA TTTTTATGGAGCTTA Shewana3_0810 936960 - 935224 - | DEAD/DEAH box helicase domain-containing protein TERM 1127 936787 - 936806 + g 74 -4.9 -4.8048 | opp_overlap 936787, overlap 936789 GAGTAATTCGAGCAA CGGCAGG GTAAAG CCTGCGG TTTTTCCTGTCCCCG Shewana3_0811 937366 - 938412 + | hypothetical protein TERM 1128 938828 - 938838 + G 71 -6.8 -4.25104 | opp_overlap 938827 938828 GTCATTGTTGACAAT GCCT TGC AGGC TTTTACTGAGGGAGG TERM 1129 939421 - 939401 - g 70 -4.6 -4.67011 | AAGGTTATCGAAAAA GCCTCGGA GGAGT TCCGTAGC CGTACTATGTCAGTG Shewana3_0812 938660 - 940621 + | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 1130 940809 - 940823 + G 79 -5.6 -5.05113 | overlap 940807 TAACTTTTTTACTCC CGCAGG TGG CGTGCG TTTTCTTTCTATCGC Shewana3_0813 940618 - 942369 + | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 1131 942730 - 942713 - g 72 -8.4 -3.8709 | opp_overlap 942711 AAAGGGCCCGAGAAA GACCGC TGTGAG GCGGTC AATATTACGGATGCC Shewana3_0814 942422 - 943063 + | putative adenylyl cyclase CyaB TERM 1132 943604 - 943591 - g 70 -8.1 -3.70902 | TCGGCCAGAGCTAAA CCAGG TTAT CCTGG AGCTTATCTGTGAAA Shewana3_0815 943094 - 944707 + | IS4 family transposase Shewana3_0816 944979 - 944800 - | DNA binding domain-containing protein TERM 1133 945062 - 945033 - R 83 -9.3 -4.07466 | opp_overlap 945031, overlap 945034 945036 AGTATAGAACAAGAA TCAGACTGCGC TTTGGCGG GCGCAGTCTGG GGTTGGCTGGCGACT TERM 1134 945061 - 945034 - R 95 -12.8 -3.03395 | opp_overlap 945031, overlap 945033 945036 GTATAGAACAAGAAT CAGACTGCGC TTTGGCGG GCGCAGTCTG GGGTTGGCTGGCGAC TERM 1135 945059 - 945036 - R 71 -9.6 -3.06098 | opp_overlap 945031, overlap 945034 945033 ATAGAACAAGAATCA GACTGCGC TTTGGCGG GCGCAGTC TGGGGTTGGCTGGCG Shewana3_0817 945810 - 945076 - | hypothetical protein TERM 1136 945631 - 945598 - G 78 -2.5 -5.26875 | gap 1, overlap 945629 GGTCGAAGCAAAAAA GGCAATATTACGCTCA AGG TTAGC-TAATAACGCC GCATCGCCTACCCGC TERM 1137 946183 - 946210 + H 88 -12.6 -2.62933 | TCCATCCGTGGATGC TCGACCGCCCCG TCCA TGGGGCGGACGG TCGTCTCGCACATTA Shewana3_0818 946687 - 947175 + | hypothetical protein TERM 1138 947346 - 947319 - T 81 -12 -2.56095 | overlap 947315 CCGACATGGAAGTGA CCGTCCGTGACA TGGA TGTCACGGTCGA GCATACAAGGATGTA TERM 1139 947566 - 947582 + T 100 -12.3 -4.15066 | opp_overlap 947566 TTAGCCCATAAAAAA GCCAGAC TGA GTCTGGC TTTCGTTTATCAATA TERM 1140 947582 - 947566 - T 100 -12.3 -5.26316 | opp_overlap 947566 TTAGCCCATAAAAAA GCCAGAC TGA GTCTGGC TTTCGTTTATCAATA Shewana3_0819 950804 - 947610 - | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 1141 951001 - 951032 + r 100 -13.2 -3.32756 | opp_overlap 951006, overlap 951006 AACGCTCAATTGACA AAAAAGCCAGTGTT TGAA AACACTGGCTTTTG ATTTTACTTTCAGGT TERM 1142 951006 - 951027 + r 100 -13.1 -4.74084 | opp_overlap 951006, overlap 951001 TCAATTGACAAAAAA GCCAGTGTT TGAA AACACTGGC TTTTGATTTTACTTT TERM 1143 951027 - 951006 - R 100 -13.1 -5.31456 | opp_overlap 951006 951001 TCAATTGACAAAAAA GCCAGTGTT TGAA AACACTGGC TTTTGATTTTACTTT Shewana3_0820 951611 - 951063 - | SH3 type 3 domain-containing protein TERM 1144 951725 - 951703 - R 100 -16.4 -3.17194 | opp_overlap 951701 951700 AGGCCTGCAATGCAA GAGGGAAGTC ATA GACTTCCCTC AACTTTGCCGCATCC Shewana3_0821 953096 - 951807 - | phosphate transporter Shewana3_0822 953802 - 953122 - | hypothetical protein TERM 1145 953869 - 953842 - H 91 -8.4 -4.63527 | opp_overlap 953841 CCATGATTGGAAAAA GCGGGCGCAT GTTACCCT ATGCGTCCGC GTATTGAAACTGTGT TERM 1146 953904 - 953879 - H 70 -7.7 -3.64703 | opp_overlap 953879 953878 953874 GTCCGCGTATTGAAA CTGTGTTTTTT GAGA AAAAATCACAG CTTTATTCTAACGGG Shewana3_0823 954034 - 955545 + | adenylate cyclase TERM 1147 955604 - 955578 - T 76 -8 -4.1711 | opp_overlap 955580, overlap 955579 ACCACTTTGAATAAA GTTTAGGAAGGC CAT GCCTTCCTAATT CTTTTGGGCTTCCAA TERM 1148 955603 - 955579 - T 84 -11.5 -3.09784 | opp_overlap 955580, overlap 955578 CCACTTTGAATAAAG TTTAGGAAGGC CAT GCCTTCCTAAT TCTTTTGGGCTTCCA TERM 1149 955580 - 955602 + T 100 -15 -4.21933 | opp_overlap 955579 955578 CACTTTGAATAAAGT TTAGGAAGGC CAT GCCTTCCTAA TTCTTTTGGGCTTCC Shewana3_0824 956423 - 955599 - | Ion transport 2 domain-containing protein TERM 1150 956026 - 956009 - G 74 -7.7 -4.19506 | ATGCGAAGGTTAAAA TGGTCAC CATA GCGACCA GTAAACTGGCGAGGG TERM 1151 956222 - 956201 - G 80 -2.9 -5.36441 | GGCGCAGATAAAAAA CTTTATCGC GTGC GCGAAACAG GCCAACGAAAAAGTT Shewana3_0825 956886 - 956557 - | hypothetical protein TERM 1152 956957 - 956979 + r 76 -10.7 -2.62515 | opp_overlap 956957 956961, overlap 956961 TAATGGCTTAAGCAA TAAAGTGCG AGTCG CGCACTTTA TCGTATGCCAAACTT TERM 1153 956979 - 956957 - R 81 -10.7 -3.3482 | opp_overlap 956957 956961, overlap 956961 TAATGGCTTAAGCAA TAAAGTGCG AGTCG CGCACTTTA TCGTATGCCAAACTT TERM 1154 956961 - 956975 + r 72 -7.1 -4.0162 | opp_overlap 956957 956961, overlap 956957 GGCTTAAGCAATAAA GTGCG AGTCG CGCAC TTTATCGTATGCCAA TERM 1155 956975 - 956961 - R 75 -7.1 -4.3255 | opp_overlap 956961 956957, overlap 956957 GGCTTAAGCAATAAA GTGCG AGTCG CGCAC TTTATCGTATGCCAA Shewana3_0826 957647 - 956994 - | hypothetical protein TERM 1156 957435 - 957423 - G 82 -7.7 -4.74706 | TTCAATACTCAAAAA TAGCG TCT CGCTA CCATGACCCTTAAGT TERM 1157 957779 - 957739 - R 100 -7.7 -6.07374 | gap 1, opp_overlap 957739 ACAAAAAACAAAAAA GCCGAGCA-CAATAGG GGGTGATGGT CCCATCGGTGCTCGGC GTTTGGTCAATCATG Shewana3_0827 958486 - 957797 - | phage shock protein A, PspA TERM 1158 958184 - 958200 + g 91 -6.6 -5.07053 | CTGCTCAGCCAGCTC TTGCTC TAATT GAGCAA TTTTTTCAGCTACTT Shewana3_0828 958912 - 958499 - | hypothetical protein Shewana3_0829 960724 - 958991 - | spermidine synthase TERM 1159 960003 - 959991 - G 71 -5.5 -4.46212 | opp_overlap 959991 959999 CCCGTGACCACAAAA TGCCC CGC GAGCA ATAATTTTGCTCTTT TERM 1160 960632 - 960610 - G 70 -11.2 -2.62983 | GGTATTCGTAGATCA GGCCGCACCC AGC GAGCACGGCC ATAATGCCCAATAGT TERM 1161 960662 - 960705 + g 86 -11 -3.97019 | gap 1, opp_overlap 960662 TAGGACATCATCGAA CCAGCTTAGGCGACTCGTTTG TAC CGCTTGAGTCGCC-GAGCTGG TTGTTTGGGATTCGT Shewana3_0830 961628 - 960729 - | hypothetical protein Shewana3_0831 962621 - 961644 - | hypothetical protein TERM 1162 961843 - 961865 + g 80 -3.4 -5.23316 | TAGGGGCTGTCGAAG CGTTTCCCTT GAG AATCGAAACG TTTTTTGGTCTGCTC TERM 1163 962942 - 962930 - g 71 -10.5 -3.05384 | CCCCTTGTTACTCAA GCCGC AGA GCGGC ATTGGGCACGCCTCG Shewana3_0832 962879 - 965743 + | glutamate-ammonia ligase adenylyltransferase Shewana3_0833 965846 - 966814 + | diguanylate cyclase with GAF sensor TERM 1164 966896 - 966879 - T 100 -11.3 -4.78149 | opp_overlap 966879 TTTATAAGGTAAAAA GGGAGAC TGTA GTCTCCC TTTTCATGGGTGAAA TERM 1165 966879 - 966896 + T 100 -11.3 -4.2828 | opp_overlap 966879 TTTATAAGGTAAAAA GGGAGAC TGTA GTCTCCC TTTTCATGGGTGAAA Shewana3_0834 967872 - 966913 - | hypothetical protein TERM 1166 967407 - 967431 + g 74 -7.7 -4.19953 | overlap 967402 967409 TGGATTTATGGGCCG TTGGCGCGGCA TCT TGCCCCGCCTG TTTTGAGCTTAAGTA TERM 1167 967409 - 967429 + g 85 -12.5 -3.69618 | overlap 967402 967407 GATTTATGGGCCGTT GGCGCGGCA TCT TGCCCCGCC TGTTTTGAGCTTAAG Shewana3_0835 968003 - 968986 + | LysR family transcriptional regulator Shewana3_0836 969062 - 969685 + | lysine exporter protein LysE/YggA TERM 1168 969682 - 969668 - T 86 -10 -4.07568 | GGGCTTGCCGGAAAA GTCGCT ATT AGCGAC TGATAACCTAAGCGT Shewana3_0837 970709 - 969774 - | NAD-dependent epimerase/dehydratase Shewana3_0838 971383 - 970946 - | MerR family transcriptional regulator Shewana3_0839 972635 - 971433 - | AFG1 family ATPase TERM 1169 973674 - 973642 - g 70 -9.7 -3.25088 | overlap 973643 GCGCAAATGGAGCAA GGCCATGCCCAGATG TTA CAACAGGGCACGGCG AGCGATGTACCTAGC TERM 1170 973673 - 973643 - g 77 -13.2 -2.54732 | overlap 973642 CGCAAATGGAGCAAG GCCATGCCCAGATG TTA CAACAGGGCACGGC GAGCGATGTACCTAG Shewana3_0840 972865 - 973701 + | hypothetical protein Shewana3_0841 975243 - 973705 - | peptidase M16 domain-containing protein Shewana3_0842 976655 - 975240 - | peptidase M16 domain-containing protein TERM 1171 976746 - 976760 + H 73 -3.6 -5.00884 | overlap 976747 976757 TTTCATCTAAATCAG TTGAAT AGC ATTCAG TTTTTTAAAAGAACT Shewana3_0843 976817 - 977644 + | hypothetical protein TERM 1172 977699 - 977670 - T 100 -14.5 -3.65351 | opp_overlap 977676, overlap 977653 977676 TTATTTCGATTGAAA CAAAAATACCCGC CTAG GCGGGTATTTTTA TGGGCGCAGCGGTAT TERM 1173 977693 - 977676 - T 100 -11.3 -5.30616 | opp_overlap 977676, overlap 977670 CGATTGAAACAAAAA TACCCGC CTAG GCGGGTA TTTTTATGGGCGCAG TERM 1174 977676 - 977693 + T 100 -11.3 -4.82901 | opp_overlap 977676 977670 CGATTGAAACAAAAA TACCCGC CTAG GCGGGTA TTTTTATGGGCGCAG TERM 1175 977700 - 977728 + T 71 -8.2 -3.43049 | gap 1, overlap 977703 977705 AGGCGGGTATTTTTA TGGGCGCAGCGGT ATCA ACCGCTGC-TCTA TTGATTCGCTTATTA TERM 1176 977703 - 977726 + T 95 -12.4 -3.27511 | overlap 977700 977705 CGGGTATTTTTATGG GCGCAGCGGT ATCA ACCGCTGCTC TATTGATTCGCTTAT TERM 1177 977705 - 977724 + T 100 -13.6 -3.19482 | overlap 977703 977700 GGTATTTTTATGGGC GCAGCGGT ATCA ACCGCTGC TCTATTGATTCGCTT Shewana3_0844 978655 - 977741 - | ErfK/YbiS/YcfS/YnhG family protein Shewana3_0845 980383 - 978827 - | anaerobic nitric oxide reductase transcription regulator TERM 1178 980552 - 980528 - R 91 -12.2 -3.51202 | opp_overlap 980532, overlap 980521 980520 980524 CATCAAACTAAGCAA CCAAGGTGCC TAAAC GACACCTTGG TCAGACCGGATTAAT Shewana3_0846 982861 - 980576 - | putative nitric oxide reductase (subunit B) transmembrane protein Shewana3_0847 983483 - 985207 + | potassium/proton antiporter TERM 1179 985309 - 985328 + T 100 -12.2 -5.63504 | opp_overlap 985309 ACATCCAACAAAAAA TGCCAAGC AATT GCTTGGCA TTTTTTTATCCGCTT TERM 1180 985328 - 985309 - T 100 -12.2 -5.49234 | opp_overlap 985309 ACATCCAACAAAAAA TGCCAAGC AATT GCTTGGCA TTTTTTTATCCGCTT Shewana3_0848 986229 - 985378 - | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase TERM 1181 987574 - 987562 - g 71 -6.9 -4.17089 | overlap 987553 GTCAAACGCTTAAAA GGCGA AGG CCGCC CTGTCAATCAAGTGG Shewana3_0849 986407 - 987837 + | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase TERM 1182 988182 - 988198 + G 71 -6.5 -4.15044 | opp_overlap 988182 988181 GGGCACCTTGAGAAT CTGGCCT TGC AGGGCAG TTTATTGCCAAAAGA Shewana3_0850 987834 - 988661 + | hypothetical protein Shewana3_0851 988815 - 989294 + | TetR family transcriptional regulator TERM 1183 989308 - 989337 + T 100 -13.1 -4.17516 | gap 1, opp_overlap 989316, overlap 989316 AATCATAAGCATCAC CACAAAAAGGAGCC TCA GGCTCCTTTTT-TG TTTCTATGGTTTGGC TERM 1184 989330 - 989316 - T 100 -11.4 -4.93296 | opp_overlap 989308 989316 GCATCACCACAAAAA GGAGCC TCA GGCTCC TTTTTTGTTTCTATG TERM 1185 989316 - 989330 + T 100 -11.4 -5.76237 | opp_overlap 989316, overlap 989308 GCATCACCACAAAAA GGAGCC TCA GGCTCC TTTTTTGTTTCTATG Shewana3_0852 989770 - 989381 - | hypothetical protein TERM 1186 989903 - 989874 - R 100 -13.7 -4.17023 | opp_overlap 989876 989880, overlap 989876 989880 CTAAGCAGGGGAAAA GATAAAGGGAGCC AAGT GGCTCCCTTTATG GTTAATACGCAAACT TERM 1187 989901 - 989876 - R 100 -16.3 -3.68036 | opp_overlap 989876 989880, overlap 989874 989880 AAGCAGGGGAAAAGA TAAAGGGAGCC AAGT GGCTCCCTTTA TGGTTAATACGCAAA TERM 1188 989876 - 989901 + r 100 -16.3 -2.77899 | opp_overlap 989876 989874 989880, overlap 989880 AAGCAGGGGAAAAGA TAAAGGGAGCC AAGT GGCTCCCTTTA TGGTTAATACGCAAA TERM 1189 989897 - 989880 - R 100 -12.7 -4.45771 | opp_overlap 989876 989880, overlap 989876 989874 AGGGGAAAAGATAAA GGGAGCC AAGT GGCTCCC TTTATGGTTAATACG TERM 1190 989880 - 989897 + r 100 -12.7 -4.08144 | opp_overlap 989880 989876 989874, overlap 989876 AGGGGAAAAGATAAA GGGAGCC AAGT GGCTCCC TTTATGGTTAATACG pntB 991409 - 989925 - | pyridine nucleotide transhydrogenase pntA 992947 - 991421 - | NAD(P) transhydrogenase subunit alpha TERM 1191 991912 - 991922 + g 80 -4.6 -5.19879 | overlap 991885 CATCGAAGTTGATGC TGGC GAC GCCG TTTTTCTCTTTACAC Shewana3_0855 993365 - 995179 + | sulfite reductase (NADPH) alpha subunit Shewana3_0856 995254 - 996951 + | sulfite reductase subunit beta Shewana3_0857 996944 - 997741 + | phosphoadenosine phosphosulfate reductase TERM 1192 997767 - 997788 + F 100 -10.2 -5.86976 | opp_overlap 997743 997767 GATTTAATAGATAAA TGCCACAG TATTCC CTGTGGCA TTTTTTATTTTATGC TERM 1193 997788 - 997767 - f 91 -10.2 -4.21811 | opp_overlap 997767, overlap 997743 GATTTAATAGATAAA TGCCACAG TATTCC CTGTGGCA TTTTTTATTTTATGC TERM 1194 998217 - 998247 + F 76 -10.5 -3.06302 | gap 1 AATCTGCCCATTTCA CCTCGGTCAGCTGT GGTC AAAGCTG-CCGAGG TTGAGTCAACATAGT TERM 1195 998576 - 998590 + G 70 -4.2 -4.63218 | CGCCTCCATTTTAAG CGTGGT GCT ACTGCG TTTTATTGACCCGCC Shewana3_0858 998418 - 999203 + | monofunctional biosynthetic peptidoglycan transglycosylase TERM 1196 999504 - 999533 + F 84 -6.5 -4.94992 | opp_overlap 999507, overlap 999507 AACAGGTCAGTATTT AAATACCGAAGGT GAGT GCTTTCGGTATTA TTTTTGTCACTTTGA TERM 1197 999507 - 999530 + F 87 -8.2 -4.55383 | opp_overlap 999507, overlap 999504 AGGTCAGTATTTAAA TACCGAAGGT GAGT GCTTTCGGTA TTATTTTTGTCACTT Shewana3_0859 999571 - 1001307 + | hypothetical protein TERM 1198 1001326 - 1001364 + T 77 -10.5 -3.18274 | opp_overlap 1001337, overlap 1001337 TGATACCTTAGAGTG TTAATCGAAAAGCCAGC TGATT GCTGGCTTTTTTGTTAA TTGGCTTGCGCTAAC TERM 1199 1001353 - 1001337 - T 88 -9.4 -4.27584 | opp_overlap 1001326 1001337 AGTGTTAATCGAAAA GCCAGC TGATT GCTGGC TTTTTTGTTAATTGG TERM 1200 1001337 - 1001353 + T 100 -9.4 -5.5604 | opp_overlap 1001337, overlap 1001326 AGTGTTAATCGAAAA GCCAGC TGATT GCTGGC TTTTTTGTTAATTGG Shewana3_0860 1002908 - 1001361 - | hypothetical protein TERM 1201 1002859 - 1002836 - G 100 -18.2 -4.29325 | CAGGAATAGCGAAAA GCGCGAGCCT GATA AGGCTCGCGC AAATGATCACGCCCA TERM 1202 1003048 - 1003066 + r 76 -2.5 -5.35459 | gap 1 GCAGTTTTTGCAAGT CAG-CATA GAAT TATGGCTG TTTTTTGTGCTCTGT Shewana3_0861 1003979 - 1003095 - | phospholipase A1 Shewana3_0862 1004410 - 1005240 + | uroporphyrinogen-III C-methyltransferase Shewana3_0863 1005319 - 1006227 + | sulfate adenylyltransferase subunit 2 cysN 1006357 - 1007799 + | sulfate adenylyltransferase subunit 1 Shewana3_0865 1007803 - 1009527 + | TrkA domain-containing protein Shewana3_0866 1009575 - 1010192 + | adenylylsulfate kinase Shewana3_0867 1012082 - 1010184 - | ATPase domain-containing protein Shewana3_0868 1014313 - 1012082 - | diguanylate cyclase/phosphodiesterase Shewana3_0869 1015293 - 1014454 - | hypothetical protein TERM 1203 1015206 - 1015221 + g 73 -3.2 -5.00616 | overlap 1015179 1015178 CGAGCCCGAGTTGGC GCCC AAGGAGCA GGGC TTTTTTACGGGCCGA Shewana3_0870 1016624 - 1015419 - | major facilitator transporter TERM 1204 1015987 - 1015967 - G 74 -4 -5.00846 | gap 1 CAAACACCATAAAAA TCTGCCGAC GGGC GCCGG-AGA AGAAGGTCAGTAAGT TERM 1205 1016935 - 1016921 - H 72 -7.1 -3.91897 | opp_overlap 1016921 1016926 CTGGTGAGCCATAAA GCACC CCTCT GGTGC TTAATAAGCGCAGTG Shewana3_0871 1017066 - 1017587 + | protoporphyrinogen oxidase Shewana3_0872 1017629 - 1018156 + | hypothetical protein Shewana3_0873 1018421 - 1019428 + | putative lipoprotein TERM 1206 1019533 - 1019494 - T 100 -9.7 -4.63486 | gap 2, opp_overlap 1019500 1019507, overlap 1019496 1019507 AGTTCGCGAATAAAA CACAATAAAAAAACCAGCA GAAA TGCTGG-TTTTTTATTG-G TAATTCGCCAGTCGA TERM 1207 1019532 - 1019496 - T 100 -13.4 -3.93367 | gap 1, opp_overlap 1019500 1019507, overlap 1019494 1019507 TTCGCGAATAAAACA CAATAAAAAAACCAGCA GAAA TGCTGG-TTTTTTATTG GTAATTCGCCAGTCG TERM 1208 1019500 - 1019529 + T 81 -10.9 -3.27298 | opp_overlap 1019496 1019494 1019507, overlap 1019507 CGAATAAAACACAAT AAAAAAACCAGCA GAAA TGCTGGTTTTTTA TTGGTAATTCGCCAG TERM 1209 1019507 - 1019522 + T 100 -9 -5.52023 | opp_overlap 1019507 1019496 1019494, overlap 1019500 AACACAATAAAAAAA CCAGCA GAAA TGCTGG TTTTTTATTGGTAAT TERM 1210 1019522 - 1019507 - T 100 -9 -5.94214 | opp_overlap 1019500 1019507, overlap 1019496 1019494 AACACAATAAAAAAA CCAGCA GAAA TGCTGG TTTTTTATTGGTAAT Shewana3_0874 1020304 - 1019552 - | DSBA oxidoreductase Shewana3_0875 1021202 - 1020558 - | formate dehydrogenase TERM 1211 1021377 - 1021397 + r 72 -7.6 -3.84901 | overlap 1021389 CTAGAGCAATTTACC CCAAGGTC ACTCC GACTTTGG TTGATTTTTACTGCG TERM 1212 1021482 - 1021454 - R 100 -16.9 -4.85599 | TGCATGCGATAAAAA TGCCCTTGTTTGC AAT ACAAACAAGGGCA TATACAAATTCGCTG Shewana3_0876 1022163 - 1021510 - | dihydropteridine reductase TERM 1213 1022284 - 1022246 - H 72 -6.2 -4.28762 | opp_overlap 1022246 1022249 1022256, overlap 1022235 1022249 1022282 ACAATGTGATCAAAA CAGCTATCAGTTTCAAAA TAT TTTTGAAATTAATAGTCG TTTTGCGCAACGAAG Shewana3_0877 1022525 - 1023535 + | sugar-binding protein, putative Shewana3_0878 1023925 - 1025547 + | hypothetical protein Shewana3_0879 1025709 - 1026392 + | hypothetical protein TERM 1214 1026612 - 1026585 - T 88 -12.6 -2.62616 | TGATTTGCGAGACGA CCGTCCGCCCCA TGGA CGGGGCGGTCGA GCATCCACGGATGGA Shewana3_0880 1027484 - 1026759 - | ABC transporter related TERM 1215 1027043 - 1027058 + g 70 -3.2 -4.82901 | overlap 1027021 TCGCCAGCGCGCGGG CAATGG CAAC CCTTTG TTTTTGTCCACCCGA Shewana3_0881 1028157 - 1027477 - | polar amino acid ABC transporter, inner membrane subunit Shewana3_0882 1028897 - 1028163 - | extracellular solute-binding protein Shewana3_0883 1029272 - 1030096 + | hypothetical protein Shewana3_0884 1030991 - 1030101 - | LysR family transcriptional regulator TERM 1216 1031533 - 1031516 - g 78 -6.3 -4.88228 | gap 1 ACTCAATATCAAAAA GCAT-GCG CGT CGCCATGC TAAGGCCGCCTAATG Shewana3_0885 1031112 - 1031546 + | LrgA family protein Shewana3_0886 1031546 - 1032280 + | LrgB family protein TERM 1217 1032367 - 1032399 + F 91 -6.3 -5.47218 | gap 1, overlap 1032368 GTTGTTTTGCCTCTT AGGGCGC-TAACCT CTGCTT GGGTTATGCGCCCA TTTTTTTAACTGGCG TERM 1218 1032368 - 1032398 + F 84 -9.8 -3.87608 | gap 1, overlap 1032367 TTGTTTTGCCTCTTA GGGCGC-TAACCT CTGCTT GGGTTATGCGCCC ATTTTTTTAACTGGC TERM 1219 1032578 - 1032599 + G 74 -6.5 -4.32201 | overlap 1032580 CCAATTGGCGCAATT TCCCTCGCG GGAT CGTGAGGCA TTTTACCTTCATTGG Shewana3_0887 1032465 - 1032941 + | GCN5-related N-acetyltransferase Shewana3_0888 1033169 - 1034644 + | carbon starvation protein CstA TERM 1220 1034669 - 1034687 + F 100 -14.6 -4.81734 | TTTTATGACTGCTAA GGGCTGCA TTT TGCAGCCC TTTTTAATACTATTT TERM 1221 1035237 - 1035225 - g 87 -4.7 -5.46657 | overlap 1035226 1035227 CATTTCAAGAAAAAA GCCGC CCT GTGGC GTGAGGATGATTCGG mdoD 1034901 - 1036577 + | glucan biosynthesis protein D TERM 1222 1036623 - 1036605 - T 100 -11.7 -4.24002 | opp_overlap 1036605 TTTTAAATCTTAAAA CGCCAGC CCTGT GCTGGCG TTTTTGTTTTGGCCT TERM 1223 1036605 - 1036623 + T 100 -11.7 -5.46706 | opp_overlap 1036605 TTTTAAATCTTAAAA CGCCAGC CCTGT GCTGGCG TTTTTGTTTTGGCCT Shewana3_0890 1037381 - 1036665 - | glutamine amidotransferase Shewana3_0891 1037402 - 1038280 + | AraC family transcriptional regulator Shewana3_0892 1038528 - 1039997 + | phosphate transporter Shewana3_0893 1040960 - 1040010 - | hypothetical protein TERM 1224 1040320 - 1040308 - G 70 -4.7 -4.63218 | GTTTGGCCAATAAAA CGCAC CAC GGGCG TATGGGCGGTCGCGA TERM 1225 1041620 - 1041604 - g 70 -2.2 -4.92757 | opp_overlap 1041609, overlap 1041606 TCACTAAGAATAAAA TTGCCG AGCGG CGCCAA GCCGCGCTCTATGAA TERM 1226 1042119 - 1042148 + G 71 -5.9 -4.386 | gap 1 ATTGCGCTTTATGAC CAACTCACCCATTT GCC AAATC-GTGAGTTG TTTTATGACAGATTC Shewana3_0894 1041198 - 1042646 + | diguanylate cyclase with PAS/PAC and GAF sensors TERM 1227 1042680 - 1042707 + T 100 -10 -4.87786 | opp_overlap 1042680 TAGCATAAATAAAAA TCCCCGATAA GTTTAAGA TTATCGGGGA TTTTTATAGCGTTGC TERM 1228 1042707 - 1042680 - T 100 -10 -5.40464 | opp_overlap 1042680 TAGCATAAATAAAAA TCCCCGATAA GTTTAAGA TTATCGGGGA TTTTTATAGCGTTGC Shewana3_0895 1044645 - 1042753 - | methyl-accepting chemotaxis sensory transducer TERM 1229 1044783 - 1044811 + r 70 -5.3 -4.41241 | opp_overlap 1044788 GTGAGTGTAATCTCG GCAAATAGCCAAT TGA GTTAGCTAATTGC TTTTATAGGAGTTTA TERM 1230 1046486 - 1046503 + r 100 -11.3 -5.64274 | opp_overlap 1046486 TGGACGCACAAAAAA GAGGCTC CTAT GAGCCTC TTTTTTTGTGGATAA TERM 1231 1046503 - 1046486 - R 100 -11.3 -5.28176 | opp_overlap 1046486 TGGACGCACAAAAAA GAGGCTC CTAT GAGCCTC TTTTTTTGTGGATAA Shewana3_0897 1049164 - 1046531 - | aminopeptidase N TERM 1232 1046753 - 1046779 + g 70 -4.4 -4.72272 | TAAGTTGGCGAGGCG CTCTTCGGCG GTCGCGG CGCTTAAGAG TTTTTGCTCCGCAGG TERM 1233 1049362 - 1049345 - R 100 -8.4 -5.91981 | opp_overlap 1049345, overlap 1049335 AAAATGTAAAAAAAA GCCAGC GAAAAT GCTGGC TTTTTTTAAGTATTT TERM 1234 1049345 - 1049362 + r 100 -9.1 -5.54264 | opp_overlap 1049345 1049335 AAAATGTAAAAAAAA GCCAGCG AAAA TGCTGGC TTTTTTTAAGTATTT Shewana3_0898 1050011 - 1049406 - | hypothetical protein Shewana3_0899 1051467 - 1050067 - | TPR repeat-containing protein Shewana3_0900 1052007 - 1051477 - | peptide deformylase Shewana3_0901 1052282 - 1052070 - | SlyX family protein Shewana3_0902 1053242 - 1052292 - | WD-40 repeat-containing protein TERM 1235 1053537 - 1053523 - g 71 -5.6 -4.58563 | GAAGCACAAAAAGAA GCCTAC AGT GTTGGC GCTTCAATCGGTCGT Shewana3_0903 1053397 - 1054167 + | peptidylprolyl isomerase, FKBP-type TERM 1236 1054215 - 1054235 + F 100 -12.6 -5.44119 | opp_overlap 1054215 TTTGCACTCATAGAA TACCGCCC ACCTA GGGCGGTA TTTTTTTGCAGTCGA TERM 1237 1054235 - 1054215 - f 100 -12.6 -3.51924 | opp_overlap 1054215 TTTGCACTCATAGAA TACCGCCC ACCTA GGGCGGTA TTTTTTTGCAGTCGA TERM 1238 1055532 - 1055519 - g 72 -8.1 -3.85389 | overlap 1055495 CTCCAAGAAGTGAAA GGCGA TAAC TCGCC ATACACCTCCGACGG Shewana3_0904 1054793 - 1057405 + | endonuclease/exonuclease/phosphatase TERM 1239 1057457 - 1057475 + F 100 -13.2 -5.28176 | opp_overlap 1057457 TAAACTCAGAGCTAA GGGATGGT TTT ACCATCCC TTTTTTATGGCTCGC TERM 1240 1057475 - 1057457 - f 95 -13.2 -3.15236 | opp_overlap 1057457 TAAACTCAGAGCTAA GGGATGGT TTT ACCATCCC TTTTTTATGGCTCGC TERM 1241 1057563 - 1057588 + G 76 -3.2 -5.18371 | opp_overlap 1057568, overlap 1057564 1057568 GTTCCTACCATTCAA TCGAAGTGGC AAAAGC GCCACTGTGG TTTTATTTTGTCGCA Shewana3_0905 1057535 - 1057990 + | hypothetical protein Shewana3_0906 1058099 - 1058536 + | hypothetical protein Shewana3_0907 1058590 - 1058835 + | hypothetical protein Shewana3_0908 1059182 - 1060642 + | catalase domain-containing protein TERM 1242 1060683 - 1060664 - T 100 -13.6 -5.31456 | opp_overlap 1060664 TCAACCCATAAAAAA GGCCAGTG TTAT CACTGGCC TTTTTGTTTATCTAA TERM 1243 1060664 - 1060683 + T 100 -13.6 -5.42975 | opp_overlap 1060664 TCAACCCATAAAAAA GGCCAGTG TTAT CACTGGCC TTTTTGTTTATCTAA Shewana3_0909 1061306 - 1060713 - | hypothetical protein TERM 1244 1061594 - 1061605 + H 74 -4.4 -4.91987 | AACATTTTAATTTTT GACA ACGT TGTC TTTTATTGTTAGGTT TERM 1245 1063452 - 1063492 + H 100 -16.3 -4.2558 | opp_overlap 1063453 1063455 1063458, overlap 1063455 AATCGCAAAGCCAAT AGATAACCCCTGCAATGCC ACA GGTGTTGCAGGGGTTATTG TTTTGATAACAGATC TERM 1246 1063491 - 1063453 - H 95 -13.2 -3.20617 | opp_overlap 1063452 1063455, overlap 1063455 1063458 ATCGCAAAGCCAATA GATAACCCCTGCAATGCC ACA GGTGTTGCAGGGGTTATT GTTTTGATAACAGAT TERM 1247 1063489 - 1063455 - H 100 -15.8 -3.16217 | opp_overlap 1063452 1063455, overlap 1063453 1063458 CGCAAAGCCAATAGA TAACCCCTGCAATGCC ACA GGTGTTGCAGGGGTTA TTGTTTTGATAACAG TERM 1248 1063455 - 1063489 + H 100 -20.2 -4.25256 | opp_overlap 1063455 1063453 1063458, overlap 1063452 CGCAAAGCCAATAGA TAACCCCTGCAATGCC ACA GGTGTTGCAGGGGTTA TTGTTTTGATAACAG TERM 1249 1063486 - 1063458 - H 100 -13.1 -3.71156 | opp_overlap 1063455 1063452, overlap 1063455 1063453 AAAGCCAATAGATAA CCCCTGCAATGCC ACA GGTGTTGCAGGGG TTATTGTTTTGATAA TERM 1250 1065017 - 1065030 + G 71 -6.7 -4.18762 | opp_overlap 1065016 1065017 CACAGGGATATCAAG TGTCC GGCG GGACA TTTTCCCTCGGCATT Shewana3_0912 1063924 - 1065099 + | aromatic amino acid permease TERM 1251 1065160 - 1065176 + F 78 -5.9 -4.90455 | opp_overlap 1065160 TCTATGATGAATGTA TTTGCTT TGT AAGCGAA TTTTTCTAACTCTGT TERM 1252 1065235 - 1065217 - f 82 -10.3 -3.63627 | opp_overlap 1065217 GTGCGATATGCTAAA GTCAGGC CCAGT GCCTGAC TTTTTGCTTTTTAGC TERM 1253 1065217 - 1065235 + F 100 -10.3 -5.18355 | opp_overlap 1065217 GTGCGATATGCTAAA GTCAGGC CCAGT GCCTGAC TTTTTGCTTTTTAGC TERM 1254 1065633 - 1065623 - g 86 -6.8 -4.9792 | GACTCCAGAGAAAAA CCTG TTA CAGG ACGGTTTCTTAGCCA TERM 1255 1065812 - 1065795 - g 86 -5.5 -5.2204 | overlap 1065796 GAGAACCAAGAAAAA GCACTCG TTGC CGAGTGT GAAAAGGATGAAGGC TERM 1256 1065811 - 1065796 - g 73 -9 -3.71597 | overlap 1065795 AGAACCAAGAAAAAG CACTCG TTGC CGAGTG TGAAAAGGATGAAGG TERM 1257 1065971 - 1065986 + G 70 -2.5 -4.99043 | gap 1, overlap 1065971 1065972 TAACTGGATGTGGCC G-CGCC ACACG GGCGAC TTTTCTTTCTACCGC TERM 1258 1067325 - 1067315 - g 70 -8.2 -3.66178 | opp_overlap 1067314 1067310 CTCCCCAACCCTAAA CGGC CGC GCCG AATTAGTAGGTTTAC Shewana3_0913 1065339 - 1067495 + | dipeptidyl-peptidase 7 TERM 1259 1067620 - 1067596 - T 100 -11.5 -5.29716 | opp_overlap 1067596 GCAAGATAATAAAAA GCGATAAGCCA ATG TGGTTTATCGC TTTTTTGTATGTAAT TERM 1260 1067596 - 1067620 + T 100 -13.7 -5.43414 | opp_overlap 1067596 GCAAGATAATAAAAA GCGATAAGCCA ATG TGGTTTATCGC TTTTTTGTATGTAAT TERM 1261 1068058 - 1068072 + T 74 -7 -4.26076 | overlap 1068059 ACTTGTTGCGAGTCG AGCCGC AAA GCGGCG TTTTGATGGCGATGG TERM 1262 1068059 - 1068071 + T 77 -10.5 -3.15324 | overlap 1068058 CTTGTTGCGAGTCGA GCCGC AAA GCGGC GTTTTGATGGCGATG Shewana3_0914 1068369 - 1068088 - | putative lipoprotein TERM 1263 1068161 - 1068177 + g 80 -3 -5.24449 | TCTGTTTCTGCAATT GCTAAG TCAAT TTTAGC TTTTTTACATTTATC TERM 1264 1068984 - 1068954 - H 72 -9.9 -2.80821 | gap 1, opp_overlap 1068964, overlap 1068964 CTGCCAAATACACTA TCTGGAAAAACGCG CATG CGCGT-TTTCCAAA CCTATTAACTAAAAT TERM 1265 1068975 - 1068964 - H 81 -7.2 -4.60487 | opp_overlap 1068964, overlap 1068954 CACTATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 1266 1068964 - 1068975 + H 73 -7.2 -4.09511 | opp_overlap 1068964 1068954 CACTATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT Shewana3_0915 1069803 - 1071260 + | OmpA/MotB domain-containing protein TERM 1267 1071324 - 1071305 - T 100 -13.6 -3.72324 | opp_overlap 1071305 TAGCTTCATTAACAA CGCCTGAG CCAT CTCAGGCG TTTTTACTGGTATTG TERM 1268 1071305 - 1071324 + T 100 -13.6 -4.8083 | opp_overlap 1071305 TAGCTTCATTAACAA CGCCTGAG CCAT CTCAGGCG TTTTTACTGGTATTG Shewana3_0916 1072133 - 1071423 - | pseudouridine synthase, Rsu TERM 1269 1071951 - 1071963 + g 74 -6.9 -4.34402 | GCTGAGTGCTTCGGC GCCCG AAA TGGGC TTTTCATCTAAGCAG Shewana3_0917 1072837 - 1072145 - | hypothetical protein TERM 1270 1072976 - 1073000 + r 95 -12.9 -3.21924 | opp_overlap 1072976 1072980, overlap 1072980 TTCGGCTGATAAAAA CAAAGGGAGCT AAT AGCTCCCTTGG TGTTATCGACAGTCG TERM 1271 1073000 - 1072976 - R 100 -12.9 -4.82901 | opp_overlap 1072976 1072980, overlap 1072980 TTCGGCTGATAAAAA CAAAGGGAGCT AAT AGCTCCCTTGG TGTTATCGACAGTCG TERM 1272 1072980 - 1072996 + r 100 -12.3 -3.41745 | opp_overlap 1072976 1072980, overlap 1072976 GCTGATAAAAACAAA GGGAGCT AAT AGCTCCC TTGGTGTTATCGACA TERM 1273 1072996 - 1072980 - R 100 -12.3 -4.96501 | opp_overlap 1072980 1072976, overlap 1072976 GCTGATAAAAACAAA GGGAGCT AAT AGCTCCC TTGGTGTTATCGACA Shewana3_0918 1074360 - 1073023 - | Na+/H+ antiporter NhaC TERM 1274 1074139 - 1074156 + g 83 -2.7 -5.50723 | opp_overlap 1074140, overlap 1074140 ACCGCCGATAAAGGT ATCAATC GCTT GATTGAG TTTTTGTTTTGATAA TERM 1275 1075063 - 1075049 - g 70 -4.2 -4.74801 | overlap 1075050 1075053 GAACTCTATCAAAAA GTGACG TTG CGTAAC GACAAAGGCCAAGGT Shewana3_0919 1074896 - 1075804 + | hypothetical protein Shewana3_0920 1075884 - 1076435 + | FMN-binding domain-containing protein TERM 1276 1076540 - 1076556 + G 90 -9.4 -4.64766 | GAGCCTGCCCTTCAA GCCGCT ATAAC AGCGGC TTTTTCGCGTGTGGC Shewana3_0921 1076435 - 1077283 + | ApbE family protein, putative Shewana3_0922 1077339 - 1077806 + | hypothetical protein TERM 1277 1077809 - 1077842 + T 95 -12.7 -3.24232 | opp_overlap 1077811 1077818, overlap 1077811 1077818 GCGTATCCTCTAATC CATAAAAAAGAGTGC CTAG GCACTCTTTTTTATC TGTCTTTGAGCGACG TERM 1278 1077811 - 1077840 + T 100 -15.3 -3.18571 | opp_overlap 1077811 1077818, overlap 1077809 1077818 GTATCCTCTAATCCA TAAAAAAGAGTGC CTAG GCACTCTTTTTTA TCTGTCTTTGAGCGA TERM 1279 1077840 - 1077811 - T 100 -15.3 -2.52896 | opp_overlap 1077809 1077811 1077818, overlap 1077818 GTATCCTCTAATCCA TAAAAAAGAGTGC CTAG GCACTCTTTTTTA TCTGTCTTTGAGCGA TERM 1280 1077818 - 1077833 + T 100 -9 -5.46276 | opp_overlap 1077818 1077811, overlap 1077811 1077809 CTAATCCATAAAAAA GAGTGC CTAG GCACTC TTTTTTATCTGTCTT TERM 1281 1077833 - 1077818 - T 100 -9 -5.31456 | opp_overlap 1077811 1077809 1077818, overlap 1077811 CTAATCCATAAAAAA GAGTGC CTAG GCACTC TTTTTTATCTGTCTT Shewana3_0923 1079522 - 1077891 - | methyl-accepting chemotaxis sensory transducer TERM 1282 1078313 - 1078362 + g 70 -9.2 -3.59402 | gap 1 CCGCAAAGCCGCGTC CTTGCTCACCCGCACGGGCCGCC TCAAT GGCGGCGT-TGAGGGCGAGTAGG TTAGTTTGCTCTGCA TERM 1283 1079632 - 1079651 + r 100 -13.6 -3.17571 | opp_overlap 1079632 GCGATGATAAAAAAA CGCCCCAA GGTT TTGGGGCG TTGAGTTAAGCGATT TERM 1284 1079651 - 1079632 - R 100 -13.6 -5.67063 | opp_overlap 1079632 GCGATGATAAAAAAA CGCCCCAA GGTT TTGGGGCG TTGAGTTAAGCGATT Shewana3_0924 1080556 - 1079666 - | hypothetical protein TERM 1285 1080899 - 1080919 + G 76 -5.4 -4.87786 | gap 1 GGTGGTATTATGGAG CTGCATGCC GCAG GGCA-GCGG TTTTTATCACCTTCC Shewana3_0925 1080749 - 1081528 + | AraC family transcriptional regulator TERM 1286 1081558 - 1081533 - T 100 -15.5 -5.25803 | opp_overlap 1081533 AATTGGGATAAAAAA GAGGGCGTGAT AGTC ACCACGCCCTC TTGCTCATAAAGAGA TERM 1287 1081533 - 1081558 + T 100 -13.3 -3.21099 | opp_overlap 1081533 AATTGGGATAAAAAA GAGGGCGTGAT AGTC ACCACGCCCTC TTGCTCATAAAGAGA TERM 1288 1081663 - 1081675 + T 76 -2.6 -5.34309 | TTAAGGTTTTCATCG GCGG TTTTT TCGC TTTTTCTTTACTCAT Shewana3_0926 1082483 - 1082097 - | GreA/GreB family elongation factor Shewana3_0927 1084146 - 1083139 - | cytochrome d ubiquinol oxidase, subunit II Shewana3_0928 1085542 - 1084202 - | cytochrome bd ubiquinol oxidase, subunit I TERM 1289 1085238 - 1085228 - G 73 -5.4 -4.72272 | opp_overlap 1085228 CGCCTCGAGGAAAAA TGCT GTC AGCA CTTCATAGGTGAGCA TERM 1290 1085300 - 1085289 - G 76 -5.8 -4.64657 | overlap 1085290 GCAAAGGCCGAAAAA CCAC TCCA GTGG GTGCCAAATTGGTAT Shewana3_0929 1085688 - 1087100 + | GntR family transcriptional regulator TERM 1291 1087273 - 1087287 + F 71 -5 -4.70626 | opp_overlap 1087273, overlap 1087262 GCTATGTTTTGAGAA CAGTTT AGG GAACTG TTTTTGGCGTTGTTC Shewana3_0930 1087331 - 1088623 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1292 1088647 - 1088678 + T 100 -16 -3.6682 | opp_overlap 1088653, overlap 1088653 CTTGATTATTCGAAT GAAAAAGGCCGCTA ATGT TAGCGGCCTTTTAC TTTGCATAACTGACG TERM 1293 1088672 - 1088653 - T 100 -13.6 -4.87291 | opp_overlap 1088647 1088653 TATTCGAATGAAAAA GGCCGCTA ATGT TAGCGGCC TTTTACTTTGCATAA TERM 1294 1088653 - 1088672 + T 100 -13.6 -4.56914 | opp_overlap 1088653, overlap 1088647 TATTCGAATGAAAAA GGCCGCTA ATGT TAGCGGCC TTTTACTTTGCATAA Shewana3_0931 1091842 - 1088696 - | hypothetical protein TERM 1295 1088878 - 1088890 + g 79 -9.1 -4.15565 | opp_overlap 1088877 CGAGGCGGATCATAT CCCCA TGC TGGGG TTTTAGGCTGATAAA TERM 1296 1090447 - 1090430 - G 85 -12.7 -3.78351 | ATAAAGGGCAGCAAA GGCGGCA AAAC TGCCGCC AAAGACTAACAAGAG TERM 1297 1091372 - 1091354 - G 70 -8.8 -3.54543 | AGTGATGGCTGCAAA TGGCGCCA TAA TGGCGGCA ACGCTTTGGGATAAG TERM 1298 1092037 - 1092001 - R 76 -11 -2.66812 | opp_overlap 1092007, overlap 1092007 AAGTGGAGGAGATGA GGCAAAGATAGCGCAA TGATT TTGCCCTATCTTTGCT GAGCTAAAGCGGTTA TERM 1299 1092007 - 1092031 + r 70 -7.2 -3.74693 | opp_overlap 1092007 1092001 AGGAGATGAGGCAAA GATAGCGCAA TGATT TTGCCCTATC TTTGCTGAGCTAAAG Shewana3_0932 1093183 - 1092050 - | methyltransferase small TERM 1300 1093239 - 1093221 - H 77 -4.5 -5.07486 | opp_overlap 1093235, overlap 1093235 1093237 CAGTGCGAATAAAAA CGCTGCC ATTAA AACAGCG CCAATTAAATAAGGC Shewana3_0933 1093373 - 1094032 + | DNA-N1-methyladenine dioxygenase Shewana3_0934 1094167 - 1094487 + | transcriptional regulator BolA TERM 1301 1094529 - 1094511 - f 100 -13.2 -4.42788 | opp_overlap 1094511 CTGAACTTTATAAAA GCCACGTT ATC AACGTGGC TTTTTTGTTTTAGGT TERM 1302 1094511 - 1094529 + F 100 -13.2 -5.80951 | opp_overlap 1094511 CTGAACTTTATAAAA GCCACGTT ATC AACGTGGC TTTTTTGTTTTAGGT TERM 1303 1095506 - 1095518 + G 85 -7.7 -4.90266 | TTGGCACGAGCCTGG CTCCA ATA TGGAG TTTTTGATTAATAAG Shewana3_0935 1094748 - 1095860 + | TRAP dicarboxylate transporter- DctP subunit TERM 1304 1095901 - 1095928 + F 83 -10.8 -3.48378 | opp_overlap 1095904, overlap 1095904 ATATTAGCGTCTGAT TAATGTGAGATG ATTT CATCTTACATTA TCTTGTTATCGACCT TERM 1305 1095904 - 1095925 + F 72 -8.1 -3.87364 | opp_overlap 1095904, overlap 1095901 TTAGCGTCTGATTAA TGTGAGATG ATTT CATCTTACA TTATCTTGTTATCGA Shewana3_0936 1096016 - 1096525 + | S-ribosylhomocysteinase TERM 1306 1096597 - 1096584 - f 76 -8.1 -4.16842 | opp_overlap 1096584 CTTAGCGTCAAGAAA GCGAC ATTC GTCGC TTTTTTTTTCGAGCA TERM 1307 1096584 - 1096597 + F 100 -8.1 -6.06723 | opp_overlap 1096584 CTTAGCGTCAAGAAA GCGAC ATTC GTCGC TTTTTTTTTCGAGCA Shewana3_0937 1096680 - 1098731 + | TonB-dependent receptor Shewana3_0938 1099135 - 1100469 + | Na(+)-translocating NADH-quinone reductase subunit A TERM 1308 1101191 - 1101218 + G 74 -4.8 -4.82855 | opp_overlap 1101191 1101193, overlap 1101193 GGGTACCTTAGATTA CACATTCAACCA AAAC TGGTGGGATGCG TTTTTCGGTTTCATC Shewana3_0939 1100469 - 1101668 + | Na(+)-translocating NADH-quinone reductase subunit B TERM 1309 1101680 - 1101693 + G 71 -6.7 -4.12857 | opp_overlap 1101679 CTAGTAATAAAGATT CGTTC GGCA GAACG TTATTTATCGTCGTT TERM 1310 1101790 - 1101780 - g 71 -5.4 -4.56093 | overlap 1101784 1101785 AACTCAAGCAGAAAA CAAG CTG CTTG ATAAGCAAAAGTACA Shewana3_0940 1101661 - 1102449 + | Na(+)-translocating NADH-quinone reductase subunit C Shewana3_0941 1102449 - 1103081 + | Na(+)-translocating NADH-quinone reductase subunit D Shewana3_0942 1103088 - 1103696 + | Na(+)-translocating NADH-quinone reductase subunit E TERM 1311 1104985 - 1104972 - g 74 -6.7 -4.4261 | overlap 1104966 TGTCGAAGACGAAAA CATCC TGTT GGATG ACTTCGGCGGCTAAT Shewana3_0943 1103743 - 1104999 + | Na(+)-translocating NADH-quinone reductase subunit F TERM 1312 1105058 - 1105025 - f 71 -9 -3.25192 | gap 1, opp_overlap 1105025, overlap 1105023 CCCAAGGTGAGAAGA GTTGCAGATGTGGAG TAGAG CTCT-CATCTGCAAC TTTTGCATTAAAGGG TERM 1313 1105025 - 1105058 + F 100 -11.9 -4.27316 | gap 1, opp_overlap 1105025 1105023 CCCAAGGTGAGAAGA GTTGCAGATGTGGAGT AGA GCTCT-CATCTGCAAC TTTTGCATTAAAGGG TERM 1314 1105165 - 1105187 + G 100 -9.8 -5.63517 | AGCATTCAGTGAGCT GGCTGGTCCT TGT AGGTCTAGCC TTTTTTATTTCAGCC Shewana3_0944 1105032 - 1106156 + | ApbE family lipoprotein Shewana3_0945 1106168 - 1106392 + | hypothetical protein TERM 1315 1106412 - 1106430 + F 100 -13.2 -5.47821 | opp_overlap 1106412 CCGCTTCAACTGAAA TAGCCTCC TCT GGAGGCTA TTTTTTTGCCTCGAT TERM 1316 1106430 - 1106412 - f 100 -13.2 -3.75153 | opp_overlap 1106412 CCGCTTCAACTGAAA TAGCCTCC TCT GGAGGCTA TTTTTTTGCCTCGAT Shewana3_0946 1106631 - 1107104 + | bacterioferritin Shewana3_0947 1107114 - 1107581 + | bacterioferritin TERM 1317 1107608 - 1107638 + F 100 -10.5 -5.95539 | opp_overlap 1107608 1107612 TGCGCGGCTCAAGCA CCAAGGCTAGTCA CGAAA TGACTGGCCTTTG TTTTTTTATTTCGAG Shewana3_0948 1107881 - 1109884 + | methyl-accepting chemotaxis sensory transducer TERM 1318 1109922 - 1109905 - f 100 -12.7 -3.52472 | opp_overlap 1109905, overlap 1109901 ATAGTTGTAAATCAA GGGAGCC TTAG GGCTCCC TTTGTTTTTTGGGCG TERM 1319 1109905 - 1109922 + F 100 -12.7 -5.04249 | opp_overlap 1109905 1109901 ATAGTTGTAAATCAA GGGAGCC TTAG GGCTCCC TTTGTTTTTTGGGCG Shewana3_0949 1110035 - 1111114 + | DNA polymerase IV TERM 1320 1111247 - 1111221 - T 100 -9.3 -4.93318 | opp_overlap 1111221 TAGAAGCCACAAAAA GGCCGCATTGG TAAAC CCTCTGCGGCC TTTGTTATTTAAGTC TERM 1321 1111221 - 1111247 + T 100 -9.3 -4.58585 | opp_overlap 1111221 TAGAAGCCACAAAAA GGCCGCATTGG TAAAC CCTCTGCGGCC TTTGTTATTTAAGTC Shewana3_0950 1112753 - 1111290 - | M20C family Xaa-His dipeptidase TERM 1322 1112415 - 1112435 + g 71 -7.5 -4.09685 | overlap 1112414 AATACCATTGTCGGC GCCTAAGGT CGT GCCTTTGGC TTTTACCCAGTCACC TERM 1323 1112563 - 1112576 + g 74 -9.5 -3.59315 | TTGCGATCTTCCATT CCCGC GGTT GCGGG TTTGCGAATGATTAA Shewana3_0951 1112972 - 1114510 + | dihydrofolate reductase TERM 1324 1114528 - 1114580 + F 74 -4.4 -4.96848 | overlap 1114530 ATTTAACGTAATAAA TAGAAATAATTCTGTAATATCTTA CTTAT TAGGTGGTTACAGGGTTATTTCTG TTTTTATGTGACGCA TERM 1325 1115137 - 1115155 + F 100 -14.6 -5.85178 | CTTGAAATATGTCTT GCCTGCTC ATT GAGCAGGC TTTTTTTTACCTGTT TERM 1326 1115241 - 1115222 - f 100 -9.4 -5.0133 | opp_overlap 1115221 TATCTCGTCAAAAAA TTTTTGCC TAAT GGCAAAAA ATGTCCTGTGTTGAT TERM 1327 1116684 - 1116673 - g 70 -4.4 -4.68103 | CGAATGGCAACAAAA TCAG TTTG CTGA GCCTGAATGGTCGAC Shewana3_0952 1115429 - 1117618 + | TonB-dependent siderophore receptor TERM 1328 1117630 - 1117681 + F 100 -15.2 -3.10082 | opp_overlap 1117644, overlap 1117644 CTAAGCATTTTCCCC GTTGAACTCAAAAAGCCGGTGCAC TTAA GGGCACCGGCTTTTTGCTATCGAC TTCACTACGATTTTT TERM 1329 1117667 - 1117644 - f 100 -13.8 -4.74103 | opp_overlap 1117644 1117630 CGTTGAACTCAAAAA GCCGGTGCAC TTAA GGGCACCGGC TTTTTGCTATCGACT TERM 1330 1117644 - 1117667 + F 100 -13.8 -4.80882 | opp_overlap 1117644, overlap 1117630 CGTTGAACTCAAAAA GCCGGTGCAC TTAA GGGCACCGGC TTTTTGCTATCGACT TERM 1331 1118026 - 1118014 - f 95 -7.7 -5.09259 | opp_overlap 1118013 TACTTTAAAAGAAAA GGAAC CCA GTTCC ATGTTAGAAAAGCTG TERM 1332 1118333 - 1118356 + G 74 -3.8 -4.9755 | opp_overlap 1118322, overlap 1118324 1118339 GAAACGGCACTCGGC GCAGTTTTCC TGTC GGGAATTTGC TTTTTAATTCTGTCT Shewana3_0953 1118027 - 1119316 + | xanthine/uracil/vitamin C permease TERM 1333 1119352 - 1119372 + F 100 -9 -5.24531 | AGACGGTTTTTTTGA GGGTCATC TAATC GATGGCCC TTTTTTATGCGCGAT TERM 1334 1120477 - 1120463 - g 76 -5.7 -4.72272 | opp_overlap 1120475 1120476, overlap 1120473 TTGGTTGACCAAAAA GGCAA AATCA TTGCC AGAGGCATCACCCGC Shewana3_0954 1119491 - 1120609 + | gamma-glutamyl kinase proA 1120622 - 1121899 + | gamma-glutamyl phosphate reductase TERM 1335 1121935 - 1121948 + T 100 -9.5 -5.7946 | opp_overlap 1121935 CGTTCCATTAAAAAA GCCGC AATA GCGGC TTTTTTTGTTGGCAA TERM 1336 1121948 - 1121935 - T 100 -9.5 -5.14563 | opp_overlap 1121935 CGTTCCATTAAAAAA GCCGC AATA GCGGC TTTTTTTGTTGGCAA Shewana3_0956 1122275 - 1121973 - | hypothetical protein TERM 1337 1122372 - 1122354 - R 72 -7.4 -3.96148 | opp_overlap 1122352 1122354 TCTGTTGAGGATAAA TGCTGTGA CGC TCTCAGCA TATTTTAGCAATATC Shewana3_0957 1122876 - 1122400 - | ybaK/ebsC protein TERM 1338 1122532 - 1122546 + g 80 -2.8 -5.26316 | AGCCGTCGCATCGAT CAGC GTTGGCA GCTG TTTTTTCTGAGCTAG Shewana3_0958 1123926 - 1123006 - | hypothetical protein TERM 1339 1124688 - 1124674 - g 77 -10 -3.794 | opp_overlap 1124681 CGTCAAGCCACTAAA GATGCG GGC CGCATC GCGGGTCTTGAAGTT Shewana3_0959 1124212 - 1126131 + | chaperone protein DnaK TERM 1340 1126141 - 1126157 + F 70 -8.1 -3.64162 | opp_overlap 1126134 1126129 AAATAACATTTGCTC TCAATCA AAT TGATTGA TTTCAAATAGTTAAT TERM 1341 1126180 - 1126208 + F 100 -15.4 -3.37612 | gap 1 TAGTTAATTTCTAGG CGGGCGTTACGGG GAAA CCC-TAACGCCCG TTCGTTCAACTTAAG Shewana3_0960 1126241 - 1127374 + | chaperone protein DnaJ TERM 1342 1127459 - 1127417 - T 77 -10.9 -2.78596 | opp_overlap 1127417 1127425, overlap 1127425 TAGCTGCGCACTAGA TAAATAAAGCCTCGC-AGTGT TTA ACACTAGCGGGGCTTT-TTTA TATCTCAAATCTAGT TERM 1343 1127417 - 1127459 + T 95 -13.1 -2.90941 | opp_overlap 1127417 1127425, overlap 1127425 TAGCTGCGCACTAGA TAAATAAAGCCTCGC-AGTGT TTA ACACTAGCGGGGCTTT-TTTA TATCTCAAATCTAGT TERM 1344 1127425 - 1127452 + T 100 -12.8 -5.4251 | gap 1, opp_overlap 1127417 1127425, overlap 1127417 CACTAGATAAATAAA GCCTCGC-AGTGT TTA ACACTAGCGGGGC TTTTTTATATCTCAA TERM 1345 1127452 - 1127425 - T 100 -10.6 -4.64048 | gap 1, opp_overlap 1127425 1127417, overlap 1127417 CACTAGATAAATAAA GCCTCGC-AGTGT TTA ACACTAGCGGGGC TTTTTTATATCTCAA TERM 1346 1127530 - 1127508 - T 74 -7.6 -3.90943 | overlap 1127502 TAAAGCAAAGTCAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAAAGGGGAA TERM 1347 1127560 - 1127540 - T 93 -9.7 -4.27617 | opp_overlap 1127540 CACACCCGACCAAAA GGGGAAAAG CGC CTGTTCCCC TTTTGGATATCCCCC TERM 1348 1127540 - 1127560 + T 88 -9.7 -4.2349 | opp_overlap 1127540 CACACCCGACCAAAA GGGGAAAAG CGC CTGTTCCCC TTTTGGATATCCCCC Shewana3_0961 1128826 - 1127762 - | hypothetical protein TERM 1349 1129625 - 1129641 + G 73 -9.4 -3.80573 | TCAGTGTCATCCTCG GCCTGC AAGGC GCAGGC TTTAGTGCTCGTGCC Shewana3_0962 1129361 - 1130692 + | DEAD/DEAH box helicase domain-containing protein Shewana3_0963 1130825 - 1131418 + | GCN5-related N-acetyltransferase Shewana3_0964 1131543 - 1132352 + | peptidase M48, Ste24p TERM 1350 1132778 - 1132799 + G 73 -5.1 -4.65895 | gap 1, opp_overlap 1132768 1132767 1132779, overlap 1132767 1132779 GCAAGCTGCAGCAGA AGCTTCTGCC GAA GGC-GAAGCC TTTTTAGCTGAAAAC Shewana3_0965 1132545 - 1133162 + | peptidylprolyl isomerase, FKBP-type TERM 1351 1133174 - 1133194 + F 100 -11.2 -4.9725 | opp_overlap 1133174 CTAATGTGATTGAAA CGCCTAAG CCAGT CTTAGGCG TTTTTGTATGGAAGT TERM 1352 1133194 - 1133174 - f 84 -11.2 -3.66874 | opp_overlap 1133174 CTAATGTGATTGAAA CGCCTAAG CCAGT CTTAGGCG TTTTTGTATGGAAGT TERM 1353 1133743 - 1133724 - g 76 -7 -4.4458 | overlap 1133726 CACAGATATAAGAAA GACGCGCC ATCT GGCACGGC ACTAAAAATGGGTGA TERM 1354 1133741 - 1133726 - g 72 -8.2 -3.8147 | overlap 1133724 CAGATATAAGAAAGA CGCGCC ATCT GGCACG GCACTAAAAATGGGT Shewana3_0966 1133235 - 1134047 + | dihydrodipicolinate reductase TERM 1355 1134076 - 1134050 - f 81 -11 -3.24032 | opp_overlap 1134057, overlap 1134057 AGGTTTGAATTAACA GAAAAAACGCCA TAT TGGCGTTTTTTT TTGCACTCAGATACC TERM 1356 1134057 - 1134069 + F 100 -9.1 -6.09133 | opp_overlap 1134050 1134057 AATTAACAGAAAAAA CGCCA TAT TGGCG TTTTTTTTTGCACTC TERM 1357 1134069 - 1134057 - f 100 -9.1 -5.50925 | opp_overlap 1134057, overlap 1134050 AATTAACAGAAAAAA CGCCA TAT TGGCG TTTTTTTTTGCACTC Shewana3_0967 1134216 - 1135376 + | carbamoyl phosphate synthase small subunit TERM 1358 1138568 - 1138535 - g 79 -11.7 -3.23692 | CACCACGACCATGAA CGCAGCATTCGCCAC TTGT ATGGCACACGCTGCG GACGACCGCACTAAC carB 1135404 - 1138628 + | carbamoyl phosphate synthase large subunit TERM 1359 1138677 - 1138652 - T 100 -17.7 -4.25104 | opp_overlap 1138652, overlap 1138636 CCTCTGTCATCAAAA GGCCGGATAAC TTAA GTTATCCGGCC TTTGTTTTTGCGTTC TERM 1360 1138652 - 1138677 + T 100 -17.7 -4.91473 | opp_overlap 1138636 1138652 CCTCTGTCATCAAAA GGCCGGATAAC TTAA GTTATCCGGCC TTTGTTTTTGCGTTC Shewana3_0969 1139478 - 1138711 - | extracellular solute-binding protein TERM 1361 1139678 - 1139652 - R 100 -15.3 -4.60949 | opp_overlap 1139658 TACAGGATAAATAAA CCCAAAGAGCA GCGAG TGCTCTTTGGG GGACTAAAATCCATT Shewana3_0970 1140780 - 1139692 - | methyl-accepting chemotaxis sensory transducer Shewana3_0971 1142446 - 1141073 - | magnesium transporter TERM 1362 1141532 - 1141520 - G 76 -6.9 -4.58395 | CGTATCTTCGAAAAA GGCGA TGC CCGCC CCTGAGAAGATATTG Shewana3_0972 1143170 - 1142469 - | hypothetical protein Shewana3_0973 1143851 - 1144984 + | endonuclease/exonuclease/phosphatase Shewana3_0974 1145811 - 1144996 - | hypothetical protein Shewana3_0975 1146689 - 1145808 - | hypothetical protein Shewana3_0976 1147220 - 1146768 - | putative lipoprotein TERM 1363 1146853 - 1146871 + g 71 -6.6 -4.17425 | overlap 1146840 1146854 1146866 CAGCTGGCGTGTCCT GCGCAGGC ATT GTCTGCGG TTTTGCAGTCGTTAT TERM 1364 1147799 - 1147787 - g 73 -10.5 -3.29211 | overlap 1147782 CAACGTTAAAGGTAA GCCCG AAG CGGGC GAGACCGTCGATGTG TERM 1365 1148321 - 1148339 + G 78 -9.5 -3.85698 | opp_overlap 1148321, overlap 1148337 CGACCAGCGCGACAA CCGTGCC ATGGC GGCGCGG TTTGTGAAGGGCAAA TERM 1366 1148830 - 1148842 + G 82 -7.7 -4.65895 | ACCCGATTGGCAGCG CCTTC CCA GAAGG TTTTTACCTCAAGGG Shewana3_0977 1147689 - 1148879 + | SAM-dependent methyltransferase TERM 1367 1148909 - 1148930 + T 100 -15.9 -5.38054 | opp_overlap 1148909 TAGGGTCATAAAAAA TGCCGGTGC AACT GCACCGGCA TTTTTGTTTCTCGCA TERM 1368 1148930 - 1148909 - T 100 -15.9 -5.252 | opp_overlap 1148909 TAGGGTCATAAAAAA TGCCGGTGC AACT GCACCGGCA TTTTTGTTTCTCGCA Shewana3_0978 1149630 - 1148971 - | ribose-5-phosphate isomerase A Shewana3_0979 1149941 - 1150867 + | hypothetical protein TERM 1369 1151846 - 1151867 + G 71 -6.6 -4.2679 | gap 1, overlap 1151850 TATTGCCGCCGAGTT TAGC-CGCG CGACT CGCGAGCTA TTTTCATCCGGCTTA Shewana3_0980 1150972 - 1151883 + | 3'-5' exonuclease Shewana3_0981 1151928 - 1152896 + | hypothetical protein TERM 1370 1153020 - 1153036 + F 84 -6.5 -5.03314 | overlap 1153021 1153022 ATCAGGTTTTAATGT TTGCCAG TTG CTGGCGG TTTTTTAACGCTCGG TERM 1371 1153021 - 1153035 + F 70 -7.8 -3.61506 | overlap 1153020 1153022 TCAGGTTTTAATGTT TGCCAG TTG CTGGCG GTTTTTTAACGCTCG TERM 1372 1153317 - 1153286 - f 100 -10.2 -4.86731 | opp_overlap 1153289, overlap 1153289 CCCTGCCAAATAAAA CAACGGCTTGCATA GAAA TATGCGAGCCGTTT TATTTTGCGCGCGAT TERM 1373 1153289 - 1153314 + F 100 -14.1 -5.07652 | opp_overlap 1153286 1153289 TGCCAAATAAAACAA CGGCTTGCATA GAAA TATGCGAGCCG TTTTATTTTGCGCGC TERM 1374 1153314 - 1153289 - f 100 -11.9 -4.54026 | opp_overlap 1153289, overlap 1153286 TGCCAAATAAAACAA CGGCTTGCATA GAAA TATGCGAGCCG TTTTATTTTGCGCGC Shewana3_0982 1153449 - 1153727 + | hypothetical protein TERM 1375 1153758 - 1153788 + F 73 -9.7 -3.04298 | TATTTCTCTTATTTT TCGAGCGCCTTGG CTTAA CTAAGGTGCCCGA TGCTGTTTATTTTTG TERM 1376 1154357 - 1154368 + G 71 -5.8 -4.29738 | opp_overlap 1154356 GGGCTATTTAAAAGC CTCC GCGG GGAG TTTTGATCAATATCG Shewana3_0983 1153788 - 1155959 + | TonB-dependent siderophore receptor TERM 1377 1156162 - 1156183 + G 77 -11.5 -3.37164 | overlap 1156150 1156156 1156162 1156163 TTTGTCAGCCGTTTT GCGGCGCAC TTTT GTGCGCCGG TCTTCGTCTTTTTAA TERM 1378 1156163 - 1156182 + G 83 -15 -2.61214 | overlap 1156150 1156162 1156162 1156156 TTGTCAGCCGTTTTG CGGCGCAC TTTT GTGCGCCG GTCTTCGTCTTTTTA Shewana3_0984 1155949 - 1157154 + | hypothetical protein TERM 1379 1157189 - 1157214 + T 100 -12.6 -3.75629 | opp_overlap 1157189 AATGCCTAATAAAAA TGGCCGAGCG CGTGAC TGCTCGGCCA TTTGGCTTGGGGATG TERM 1380 1157214 - 1157189 - T 100 -11.9 -5.08088 | gap 1, opp_overlap 1157189 AATGCCTAATAAAAA TGGCCGAGC-GC GTG ACTGCTCGGCCA TTTGGCTTGGGGATG Shewana3_0985 1157706 - 1157239 - | Ferritin, Dps family protein Shewana3_0986 1157936 - 1158286 + | hypothetical protein Shewana3_0987 1158382 - 1158834 + | SSU ribosomal protein S18P alanine acetyltransferase TERM 1381 1158886 - 1158846 - T 83 -12.2 -2.61735 | gap 1, opp_overlap 1158859, overlap 1158859 TTAAGATTTTAGAAG TCGATAAAAAAAACAGCGC TTTA GCGCTG-TTTTTTTATGGA GTTAATAAAGCGAAG TERM 1382 1158859 - 1158874 + T 100 -10.4 -5.63504 | opp_overlap 1158859 1158846 AGTCGATAAAAAAAA CAGCGC TTTA GCGCTG TTTTTTTATGGAGTT TERM 1383 1158874 - 1158859 - T 100 -10.4 -5.94713 | opp_overlap 1158859, overlap 1158846 AGTCGATAAAAAAAA CAGCGC TTTA GCGCTG TTTTTTTATGGAGTT Shewana3_0988 1159868 - 1158903 - | lipoyl synthase Shewana3_0989 1160518 - 1159865 - | lipoate-protein ligase B Shewana3_0990 1160877 - 1160611 - | hypothetical protein TERM 1384 1160986 - 1160957 - R 100 -13.7 -4.57837 | opp_overlap 1160960, overlap 1160960 ATACTCCCCCAAAAA CAACTAAGCCACC CGAA GGTGGCTTAGTTT TTGTGATTCCGATTA TERM 1385 1160960 - 1160983 + r 100 -15.4 -4.98255 | opp_overlap 1160957 1160960 CTCCCCCAAAAACAA CTAAGCCACC CGAA GGTGGCTTAG TTTTTGTGATTCCGA TERM 1386 1160983 - 1160960 - R 100 -15.4 -4.40561 | opp_overlap 1160960, overlap 1160957 CTCCCCCAAAAACAA CTAAGCCACC CGAA GGTGGCTTAG TTTTTGTGATTCCGA Shewana3_0991 1162174 - 1160999 - | penicillin-binding protein 6 Shewana3_0992 1163161 - 1162319 - | rare lipoprotein A Shewana3_0993 1164209 - 1163145 - | lytic murein transglycosylase B TERM 1387 1163342 - 1163323 - G 73 -9.2 -3.6682 | TGCGAGGCATCTAAA TCGCGGGC GGTG GCCAGCGA TAAGCTTGGGCTGAG Shewana3_0994 1165330 - 1164227 - | rod shape-determining protein RodA TERM 1388 1165030 - 1165042 + g 74 -4.7 -4.78326 | opp_overlap 1165031, overlap 1165031 AGCCTAAGTTCAACC AGCGC TGC GCGCC TTTATTTATTTCCCC Shewana3_0995 1167183 - 1165327 - | peptidoglycan glycosyltransferase TERM 1389 1166759 - 1166770 + g 70 -4.4 -4.59773 | ATCGCCACTTGTTCT TCAG TCAG CTGA TTTTTAAGGGTAAGC Shewana3_0996 1167714 - 1167244 - | SPOUT methyltransferase superfamily protein Shewana3_0997 1168058 - 1167714 - | iojap-like protein Shewana3_0998 1168799 - 1168161 - | nicotinate-nucleotide adenylyltransferase Shewana3_0999 1169843 - 1168812 - | DNA polymerase III, delta subunit Shewana3_1000 1170390 - 1169896 - | rare lipoprotein B TERM 1390 1170257 - 1170299 + g 73 -9.2 -3.76968 | gap 1 GTGAGTTCGCTGTAT TCGTCCGAGCTGCTCAAAC TGAGTT GATTGAGCTGCTCGGG-GA TTTGGTAGCTACGTT TERM 1391 1170368 - 1170326 - G 100 -15.1 -4.19238 | gap 2, opp_overlap 1170334, overlap 1170327 CGTTGAAGCTTAAAA CCGCAACC-T-GCGCTGGTCA TAA TGACCAGCGCCATGATTGCGA AAGCTAAGCGTTTAA TERM 1392 1170367 - 1170327 - G 100 -16.4 -3.11222 | gap 2, opp_overlap 1170334, overlap 1170326 GTTGAAGCTTAAAAC CGCAACC-T-GCGCTGGTCA TAA TGACCAGCGCCATGATTGCG AAAGCTAAGCGTTTA TERM 1393 1170334 - 1170359 + g 76 -12.7 -2.71144 | gap 1, opp_overlap 1170327 1170326 CTTAAAACCGCAACC T-GCGCTGGTCA TAA TGACCAGCGCCA TGATTGCGAAAGCTA leuS 1173029 - 1170450 - | leucyl-tRNA synthetase Shewana3_1002 1173151 - 1173651 + | hypothetical protein TERM 1394 1173704 - 1173676 - T 100 -13.3 -3.89614 | opp_overlap 1173683, overlap 1173683 TTCAACGTGCATAAA TAAAAAACGACGC TTT GCGTCGTTTTTTT GTGAGTCATCAACAG TERM 1395 1173697 - 1173683 - T 100 -11.4 -5.72622 | opp_overlap 1173683, overlap 1173676 TGCATAAATAAAAAA CGACGC TTT GCGTCG TTTTTTTGTGAGTCA TERM 1396 1173683 - 1173697 + T 100 -11.4 -5.64274 | opp_overlap 1173683 1173676 TGCATAAATAAAAAA CGACGC TTT GCGTCG TTTTTTTGTGAGTCA Shewana3_1003 1174207 - 1173713 - | methylation site containing protein Shewana3_1004 1175773 - 1174223 - | apolipoprotein N-acyltransferase TERM 1397 1175717 - 1175680 - G 90 -12.1 -4.06903 | gap 1, overlap 1175681 AAGGGGCAAAGGAAA GCGCCGTACTGGCGCCTA AAA TAAACGCCAGCACGA-GC CGTAACACGCTCAGT TERM 1398 1175729 - 1175762 + g 70 -9.7 -3.33815 | gap 1, overlap 1175732 GAGCCGTAACACGCT CAGTCGGGACTTTTGT TGG GCAAAAG-CCCGAATG TTAGTTAGCACGGAT Shewana3_1005 1176691 - 1175816 - | CBS domain-containing protein Shewana3_1006 1177192 - 1176731 - | putative metalloprotease Shewana3_1007 1178246 - 1177182 - | PhoH family protein TERM 1399 1178476 - 1178443 - R 91 -5.4 -5.58522 | gap 2, opp_overlap 1178443 TACACAAAACAAAAA GGGCGACACTGAGGTT AGCT AAAC-CA-TGTCGCCC TGATATAGGTGCTGC Shewana3_1008 1179934 - 1178510 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 1400 1179874 - 1179894 + g 70 -9.1 -3.53012 | AAAGATCCGCCATCT TGGATGAGT CAT ACTCATTCA TTTGACAGCCCCAAG Shewana3_1009 1180406 - 1180074 - | hypothetical protein TERM 1401 1181708 - 1181681 - g 70 -11.4 -2.62263 | opp_overlap 1181696, overlap 1181685 ATGCTGCGCACACCA TTAACCCGTTGG CGGG CCAAGGGGTTAA CCTCGGCTTTAAGGA TERM 1402 1181791 - 1181773 - g 77 -8.8 -3.99405 | opp_overlap 1181773, overlap 1181762 TTAACCGAGGATAAA CCTTGGTG GTC CACCGAGG TATTAAATGCCTATC TERM 1403 1181773 - 1181791 + G 74 -11 -3.10354 | opp_overlap 1181762 1181773 TTAACCGAGGATAAA CCTTGGTG GTC CACCGAGG TATTAAATGCCTATC Shewana3_1010 1180756 - 1181982 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Shewana3_1011 1182150 - 1182737 + | peptidyl-tRNA hydrolase TERM 1404 1182778 - 1182739 - f 71 -9.9 -2.60725 | overlap 1182738 TTAAAGCAGAGTAAG CCCAGTGCTCGCGGCCC GCGAAA GGACGGCGAACACAAGG ACAATAGAATTAATC TERM 1405 1182828 - 1182852 + F 77 -10.7 -2.78384 | opp_overlap 1182827 1182826 GGCTGACTATAAACT TGCTGGTGAGT GTG ACTCGCCAGCC TATCATCGAGAGAAA Shewana3_1012 1182877 - 1183968 + | translation-associated GTPase TERM 1406 1184972 - 1185001 + T 100 -15.9 -3.20193 | opp_overlap 1184978, overlap 1184978 TACCCCAGCCATAGT TAAAAAGCCCGTC CTAC GACGGGCTTTTTG CTTTCTGTCTTTTGT TERM 1407 1184978 - 1184995 + T 100 -12.7 -5.07011 | opp_overlap 1184978, overlap 1184972 AGCCATAGTTAAAAA GCCCGTC CTAC GACGGGC TTTTTGCTTTCTGTC TERM 1408 1184995 - 1184978 - T 100 -12.7 -4.71061 | opp_overlap 1184972 1184978 AGCCATAGTTAAAAA GCCCGTC CTAC GACGGGC TTTTTGCTTTCTGTC TERM 1409 1185200 - 1185174 - T 100 -13.1 -5.38047 | CATTGAGATAAAAAA GCCACAGTGCT GAATA AACACTGTGGC TGACACCGACAAACG TERM 1410 1185244 - 1185232 - T 86 -9.1 -4.2679 | opp_overlap 1185232 GAAGCGCGACTAAAA CGCTC GCA GAGCG TTGATTAGTGATTAT TERM 1411 1185232 - 1185244 + T 73 -9.1 -3.43553 | opp_overlap 1185232 GAAGCGCGACTAAAA CGCTC GCA GAGCG TTGATTAGTGATTAT Shewana3_1013 1185891 - 1185256 - | hypothetical protein Shewana3_1014 1186375 - 1186908 + | hypothetical protein Shewana3_1015 1186922 - 1187437 + | lysozyme Shewana3_1016 1187467 - 1188285 + | hypothetical protein TERM 1412 1188315 - 1188338 + F 75 -8.2 -3.85362 | opp_overlap 1188315, overlap 1188332 GCTCCTCCTTAGCAA TGCCTACAAG TTCG TTTGTGGGCA TTTCCTACTTAAGTT TERM 1413 1188644 - 1188621 - g 80 -9.6 -4.08064 | AACGTCGCCCGAAAA TCACTGAAGC GATT GCCTCAGCGA GAGAGTTAGGCGATC Shewana3_1017 1188536 - 1189012 + | transcription elongation factor GreA TERM 1414 1189052 - 1189066 + F 100 -8.5 -5.28176 | opp_overlap 1189052 TTTACGTATAAAAAA GCCGC CTAGT GCGGC TTTTTTATACCTAAA TERM 1415 1189066 - 1189052 - f 100 -8.5 -5.28176 | opp_overlap 1189052 TTTACGTATAAAAAA GCCGC CTAGT GCGGC TTTTTTATACCTAAA Shewana3_1018 1189315 - 1189842 + | hypothetical protein TERM 1416 1190646 - 1190663 + G 70 -3.4 -4.76041 | AAACTCGGGCTCGAT TTGCGC GGTGGG GTGCAA TTTTTGCTCGATGTG TERM 1417 1191114 - 1191134 + G 70 -2.4 -5.0538 | GCTAAAAACGTGATA GGCGCGAC CGCAA GTCTGGCC TTTTTTGAGGTCAAA secD 1190220 - 1192094 + | preprotein translocase subunit SecD secF 1192097 - 1192981 + | preprotein translocase subunit SecF TERM 1418 1192992 - 1193023 + T 100 -21.8 -3.57144 | opp_overlap 1192992 1192997, overlap 1192997 CTTAAGTGCTGAAAA CAAAACGGCCACTC GCTT GAGTGGCCGTTTTG TTTAAGGCTGGAAAA TERM 1419 1193023 - 1192992 - T 100 -21.8 -4.11484 | opp_overlap 1192992 1192997, overlap 1192997 CTTAAGTGCTGAAAA CAAAACGGCCACTC GCTT GAGTGGCCGTTTTG TTTAAGGCTGGAAAA TERM 1420 1193018 - 1192997 - T 100 -15.9 -5.07652 | opp_overlap 1192997 1192992, overlap 1192992 GTGCTGAAAACAAAA CGGCCACTC GCTT GAGTGGCCG TTTTGTTTAAGGCTG TERM 1421 1192997 - 1193018 + T 100 -15.9 -4.87803 | opp_overlap 1192992 1192997, overlap 1192992 GTGCTGAAAACAAAA CGGCCACTC GCTT GAGTGGCCG TTTTGTTTAAGGCTG Shewana3_1021 1193338 - 1193039 - | hypothetical protein TERM 1422 1193143 - 1193159 + g 83 -5.1 -5.14477 | GAGTTTCACGTACTA TGGCATC AAC GATGGCA TTTTTTAGCTCTCTA rrmJ 1193429 - 1194058 + | 23S rRNA methyltransferase J Shewana3_1023 1194088 - 1196061 + | membrane protease FtsH catalytic subunit TERM 1423 1196075 - 1196103 + F 91 -8.2 -4.70583 | opp_overlap 1196078 1196083, overlap 1196078 1196083 AGCGGTTGTTAATTG AAAGAGAACCCC GTTAA GGGGTTTTCTTG TTTTATCTTGCTAGA TERM 1424 1196100 - 1196078 - f 72 -7.7 -3.75153 | opp_overlap 1196078 1196075 1196083, overlap 1196083 GGTTGTTAATTGAAA GAGAACCCC GTTAA GGGGTTTTC TTGTTTTATCTTGCT TERM 1425 1196078 - 1196100 + F 100 -9.9 -4.45115 | opp_overlap 1196078 1196083, overlap 1196075 1196083 GGTTGTTAATTGAAA GAGAACCCC GTTAA GGGGTTTTC TTGTTTTATCTTGCT TERM 1426 1196083 - 1196095 + F 87 -6.2 -5.12916 | opp_overlap 1196083 1196078, overlap 1196078 1196075 TTAATTGAAAGAGAA CCCC GTTAA GGGG TTTTCTTGTTTTATC Shewana3_1024 1196220 - 1197053 + | dihydropteroate synthase Shewana3_1025 1197128 - 1198465 + | phosphoglucosamine mutase Shewana3_1026 1198659 - 1199441 + | triosephosphate isomerase secG 1199443 - 1199775 + | preprotein translocase subunit SecG TERM 1427 1199772 - 1199751 - f 70 -5.9 -4.32201 | overlap 1199744 TCAAGCAACCGAAAA GTCAGAAAC GAAA ATTCCTGAC TAGTAAAAGGTGTCG TERM 1428 1200094 - 1200109 + F 100 -6.8 -5.60689 | opp_overlap 1200094 TCTTGAAGCTAATAA CCTCGT CATT ACGGGG TTTTTTGTTATCTGG TERM 1429 1200137 - 1200155 + F 70 -6 -4.26344 | overlap 1200138 TGGGACTTTTAAATT TGTCGTAT CCG ATGCGACG TTTTACTAGGGCTAT TERM 1430 1200164 - 1200177 + F 100 -8.1 -6.04324 | TGCGACGTTTTACTA GGGCT ATTA AGCCC TTTTTTGTTTTTTCC Shewana3_1028 1200204 - 1200659 + | hypothetical protein nusA 1200689 - 1202188 + | transcription elongation factor NusA TERM 1431 1203027 - 1203005 - g 76 -3.4 -5.10461 | TGCACGTAACAAAAA CACCGC TAAGACTAAAC GCGGTG GTAAAGATGCTCGCG infB 1202214 - 1204883 + | translation initiation factor IF-2 TERM 1432 1204912 - 1204891 - f 100 -11.5 -4.0616 | opp_overlap 1204893, overlap 1204893 CACTGTAACGATAAA GAGGGCGGC ATTA GCCGCCCTT TCAATTTAATACATT TERM 1433 1204910 - 1204893 - f 100 -14.1 -3.6217 | opp_overlap 1204893, overlap 1204891 CTGTAACGATAAAGA GGGCGGC ATTA GCCGCCC TTTCAATTTAATACA TERM 1434 1204893 - 1204910 + F 100 -14.1 -3.87149 | opp_overlap 1204891 1204893 CTGTAACGATAAAGA GGGCGGC ATTA GCCGCCC TTTCAATTTAATACA rbfA 1204946 - 1205386 + | ribosome-binding factor A Shewana3_1032 1205386 - 1206339 + | tRNA pseudouridine synthase B rpsO 1206466 - 1206735 + | 30S ribosomal protein S15 TERM 1435 1206753 - 1206781 + T 100 -17.7 -3.08966 | opp_overlap 1206760, overlap 1206760 ACGCGTTTACTGACA TAAAAAAGGAGGC TAA GCCTCCTTTTTTA TTGCCTCAAATTTAC TERM 1436 1206774 - 1206760 - T 100 -11.4 -5.38047 | opp_overlap 1206753 1206760 TACTGACATAAAAAA GGAGGC TAA GCCTCC TTTTTTATTGCCTCA TERM 1437 1206760 - 1206774 + T 100 -11.4 -5.4833 | opp_overlap 1206760, overlap 1206753 TACTGACATAAAAAA GGAGGC TAA GCCTCC TTTTTTATTGCCTCA Shewana3_1034 1208846 - 1206822 - | diguanylate cyclase/phosphodiesterase TERM 1438 1209275 - 1209259 - g 70 -2.9 -4.75219 | opp_overlap 1209267 1209270, overlap 1209261 TAACTATCAAGAAAA GACCTAC GCA GCAGGTA AAATTCCTGGTGGTT Shewana3_1035 1209065 - 1211164 + | polynucleotide phosphorylase/polyadenylase TERM 1439 1211209 - 1211238 + F 100 -12.3 -4.53439 | opp_overlap 1211215, overlap 1211215 TTCGACATGACGTGA CTAAAAGGAGATC AATT GATCTCCTTTTTG TTTGTTTAGGTTTAA TERM 1440 1211232 - 1211215 - f 93 -9.9 -4.2717 | opp_overlap 1211209 1211215 ATGACGTGACTAAAA GGAGATC AATT GATCTCC TTTTTGTTTGTTTAG TERM 1441 1211215 - 1211232 + F 100 -9.9 -5.5454 | opp_overlap 1211215, overlap 1211209 ATGACGTGACTAAAA GGAGATC AATT GATCTCC TTTTTGTTTGTTTAG TERM 1442 1211391 - 1211406 + G 75 -10.4 -3.38072 | CGCTGTTGTTGCTGT GCTGGC GGGT GCCAGC TTGATGTTGGCTGGA Shewana3_1036 1211356 - 1212258 + | lipoprotein NlpI TERM 1443 1212267 - 1212286 + F 80 -10 -3.64822 | opp_overlap 1212263 AAAATAAGCCATATC GCCCGAGA CACA TCTTGGGC TTTACCTAGCCAAGT TERM 1444 1212311 - 1212328 + F 86 -6.9 -5.03314 | CCAAGTACGTACTGA GGCGCTA TAAT TTGCGCC TTTTTTAGCGATACG prfC 1212358 - 1213938 + | peptide chain release factor 3 TERM 1445 1213978 - 1213962 - f 100 -13.7 -4.15453 | opp_overlap 1213962 TAACCTAGGCTAAAA GGCGGTG ATT CACCGCC TTTTTTGTATCTACA TERM 1446 1213962 - 1213978 + F 100 -13.7 -5.4251 | opp_overlap 1213962 TAACCTAGGCTAAAA GGCGGTG ATT CACCGCC TTTTTTGTATCTACA TERM 1447 1214647 - 1214661 + G 74 -7.1 -4.38712 | AAACTCCCAAAAGGT GGCGT AATAC ACGCC TTTTCTGGCAGTCCC TERM 1448 1214857 - 1214845 - g 70 -2.6 -4.98522 | AATGTTACAGAAAAA CGGA ATCAA CCCG CTAACGCTGTACTTT TERM 1449 1214898 - 1214885 - g 73 -5.3 -4.60797 | overlap 1214880 TTTTTATAGACAAAA TTGCA ACTT TGCAA AAAAAATCTAGTGTT TERM 1450 1214932 - 1214905 - g 91 -3.4 -5.75945 | opp_overlap 1214909, overlap 1214906 1214909 ACTTTGCAAAAAAAA TCTAGTGTTCTA ATAT CAGAACACTTGG TGTCGAATGCAATGC Shewana3_1038 1214197 - 1214964 + | TatD-related deoxyribonuclease TERM 1451 1215228 - 1215216 - g 86 -3.4 -5.64873 | TCGAATAACAAAAAA GCAA TTAAC TTGC GTACTGTGGGTGGTG TERM 1452 1215259 - 1215271 + G 76 -6.9 -4.51378 | CATTAGCCATCCAGG CCGCC TTC GGTGG TTTTGTACTGTACGT Shewana3_1039 1215141 - 1216400 + | Na+ dependent nucleoside transporter TERM 1453 1216714 - 1216695 - f 73 -5.7 -4.52873 | overlap 1216696 GCGCCACAAAAAGAA CGCTACC CTTGAC GGTAGCA AACAAAATAATGGGG TERM 1454 1217236 - 1217223 - g 71 -6.7 -4.18018 | CTTGGTTAGGCAAAA CAGGT ATGA ACCTG TACGGTTATTACGAC Shewana3_1040 1216736 - 1217575 + | nucleoside-specific channel-forming protein, Tsx TERM 1455 1217591 - 1217616 + F 100 -14.7 -4.62984 | opp_overlap 1217589 1217588, overlap 1217593 TTTCTTGTAAAAGCC GTTGGAGCCGC GATG GCGGCTCCATC TTTTATGTGTCATGA TERM 1456 1217593 - 1217614 + F 100 -15.9 -3.92276 | opp_overlap 1217589 1217588, overlap 1217591 TCTTGTAAAAGCCGT TGGAGCCGC GATG GCGGCTCCA TCTTTTATGTGTCAT TERM 1457 1217876 - 1217852 - f 71 -2.2 -5.12971 | overlap 1217853 AATACCTAATAAAAA TGTAATTTGC CCTAC ACAAATTACT CGGCATCGCCTGAAG Shewana3_1041 1217990 - 1218760 + | deoxyribose-phosphate aldolase TERM 1458 1219399 - 1219441 + G 76 -2.7 -5.10461 | gap 1, overlap 1219405 AAGACGTTGGTGTGG CGATTATCGGC-CAAACTGG CGAT CTGGTTCCCGCCGATAAACG TTTTTATTCCATCCG TERM 1459 1220224 - 1220202 - g 81 -5.7 -5.03145 | gap 1 GAAGCGGTGAAAAAA GCGA-TTCAT ATCG ATGAAGTCGC TCCAGAAAAAACACC deoA 1218945 - 1220276 + | thymidine phosphorylase Shewana3_1043 1220286 - 1221500 + | phosphopentomutase deoD 1221592 - 1222302 + | purine nucleoside phosphorylase TERM 1460 1222330 - 1222348 + T 100 -14.6 -5.4833 | opp_overlap 1222330 CTCGTTATAAAAAAA GGGTTCGC ATT GCGAACCC TTTTTTATTGCCTCG TERM 1461 1222348 - 1222330 - T 100 -14.6 -5.60993 | opp_overlap 1222330 CTCGTTATAAAAAAA GGGTTCGC ATT GCGAACCC TTTTTTATTGCCTCG Shewana3_1045 1223654 - 1222470 - | membrane protein Shewana3_1046 1223734 - 1224726 + | phosphoserine phosphatase Shewana3_1047 1224809 - 1225810 + | hypothetical protein TERM 1462 1225807 - 1225826 + T 91 -7.8 -4.85782 | opp_overlap 1225805 1225807 1225810 GGCAGTGTTAAAAGA CTAGGGCG ATGC CCCCCTAG TTTATTTTTGCAGAG TERM 1463 1225826 - 1225807 - T 70 -7.8 -3.65542 | opp_overlap 1225807, overlap 1225805 1225810 GGCAGTGTTAAAAGA CTAGGGCG ATGC CCCCCTAG TTTATTTTTGCAGAG Shewana3_1048 1228200 - 1225828 - | type IV pilus assembly PilZ TERM 1464 1227837 - 1227856 + g 71 -6.4 -4.38154 | CGATGCCATCTGGTT GTTGCGTC ACCT GACGTAGC TTTTGTCGCCGCTGT TERM 1465 1228936 - 1228926 - g 79 -8.2 -4.4078 | opp_overlap 1228926 1228923, overlap 1228907 CTTTGCCAAGCAAAA CGGC ATT GCCG TGATTATGGTCGGCC Shewana3_1049 1228303 - 1229667 + | DNA repair protein RadA TERM 1466 1229684 - 1229701 + T 89 -6.9 -5.3236 | opp_overlap 1229684 CCTCAAAACAAAAAA CAGCACC CAAT GGCGCTG TTTTTTATGGATTCT TERM 1467 1229701 - 1229684 - T 100 -9.1 -5.79595 | opp_overlap 1229684 CCTCAAAACAAAAAA CAGCACC CAAT GGCGCTG TTTTTTATGGATTCT Shewana3_1050 1230145 - 1229753 - | type IV pilus assembly PilZ Shewana3_1051 1230325 - 1231035 + | DNA-binding transcriptional regulator TorR Shewana3_1052 1232154 - 1231087 - | periplasmic sensory protein associated with the TorRS two-component regulatory system TERM 1468 1231128 - 1231118 - G 70 -2.4 -4.93318 | overlap 1231109 1231119 TACAAGGGATAAAAA TCCG CTT CGGC GAGGCTAACGTTAAG TERM 1469 1231342 - 1231365 + g 84 -4.6 -5.27938 | gap 1 TAAGTAACTGCTCAC CAGCTTGATGT CTT GCGTCA-GCTG TTTTTGTTTGAGGGT Shewana3_1053 1232211 - 1235264 + | multi-sensor hybrid histidine kinase TERM 1470 1235397 - 1235365 - T 100 -13 -3.25088 | gap 1, opp_overlap 1235367 1235372, overlap 1235372 GTGCAAATCGAGGAA TAA-AAAAGCGGCTC TAAT GAGCCGCTTTTGTTA ACTTATTTCAGGACG TERM 1471 1235367 - 1235394 + T 100 -12.8 -3.33509 | opp_overlap 1235365 1235372, overlap 1235372 GCAAATCGAGGAATA AAAAAGCGGCTC TAAT GAGCCGCTTTTG TTAACTTATTTCAGG TERM 1472 1235372 - 1235389 + T 100 -12.7 -4.74539 | opp_overlap 1235372 1235365, overlap 1235367 TCGAGGAATAAAAAA GCGGCTC TAAT GAGCCGC TTTTGTTAACTTATT TERM 1473 1235389 - 1235372 - T 100 -12.7 -5.5112 | opp_overlap 1235367 1235372, overlap 1235365 TCGAGGAATAAAAAA GCGGCTC TAAT GAGCCGC TTTTGTTAACTTATT torD 1236114 - 1235485 - | chaperone protein TorD TERM 1474 1236139 - 1236169 + r 100 -12.7 -3.69283 | gap 1, opp_overlap 1236137 1236135 1236156 1236159, overlap 1236147 CTCAAGATTAACAGT GGT-ATGCGCCTAG TTAA CTAGGCGCATCGCC TTATTGGCTCGGTTA Shewana3_1055 1238671 - 1236182 - | trimethylamine-N-oxide reductase TorA Shewana3_1056 1239865 - 1238687 - | trimethylamine-N-oxide reductase c-type cytochrome TorC Shewana3_1057 1240062 - 1239892 - | periplasmic nitrate reductase NapE TERM 1475 1241460 - 1241446 - g 72 -8.6 -3.86194 | AATCTGCTGGATAAA GACGAT AAT ATCGTC GGCGGTGGCAAGGCA Shewana3_1058 1240579 - 1241931 + | xanthine/uracil/vitamin C permease TERM 1476 1241974 - 1241940 - T 100 -12.2 -3.89822 | opp_overlap 1241947, overlap 1241941 1241947 GATCTAGTTTATAAA GTTGAAAGCGAGTGCC GTT AGCACTCGCTTTCATT GACCTCATTGTGTTC TERM 1477 1241973 - 1241941 - T 100 -15.7 -2.93572 | opp_overlap 1241947, overlap 1241940 1241947 ATCTAGTTTATAAAG TTGAAAGCGAGTGCC GTT AGCACTCGCTTTCAT TGACCTCATTGTGTT TERM 1478 1241947 - 1241967 + T 100 -12.6 -3.92178 | opp_overlap 1241941 1241940 1241947 TTTATAAAGTTGAAA GCGAGTGC CGTTA GCACTCGC TTTCATTGACCTCAT TERM 1479 1241967 - 1241947 - T 100 -13.3 -3.74347 | opp_overlap 1241947, overlap 1241941 1241940 TTTATAAAGTTGAAA GCGAGTGCC GTT AGCACTCGC TTTCATTGACCTCAT Shewana3_1059 1242388 - 1241957 - | CBS domain-containing protein TERM 1480 1242135 - 1242157 + g 70 -2.7 -4.89393 | gap 1 ACGGTAACGGGATTA CG-GGTCATC ACCT GATGAACGCG TTTTTGTAGGGTTTC Shewana3_1060 1244363 - 1242489 - | phospholipid/glycerol acyltransferase TERM 1481 1243768 - 1243725 - G 79 -6.7 -4.59773 | gap 1 CGCCATCTTTAAAAA GCCTGAGTGCCACTGG-GTA TCGCG CACGCCATTGGGACGCAGGC GAGAGACTTCTCCCG TERM 1482 1244107 - 1244074 - G 76 -5.9 -4.67641 | ACGGTAAAACTAAAA TCGAAGCTGGCGAGC ACTT GCTCGACAAAATCGA CCCCTTGCAGATAGG TERM 1483 1244180 - 1244204 + g 77 -9.3 -4.05446 | GGTAGCGCAGCATGG CCTTAGTTGGC TTG GCTAACCAAGG TTTGTCCTTGAGGGC Shewana3_1061 1245439 - 1244366 - | metallophosphoesterase TERM 1484 1246533 - 1246562 + r 100 -8.5 -4.98255 | opp_overlap 1246537 CTTCAAGAGGGACAG CCAACGCGCGGCA TTTT TACCATGCGTTGG TTTTTGTGGTTACGA TERM 1485 1246799 - 1246772 - R 88 -12.6 -2.65264 | CGATTAGCGAGACGA CCGTCCGCCCCA TGGA CGGGGCGGTCGA GCATCCAAGGATGGA TERM 1486 1247067 - 1247043 - R 100 -11.4 -5.33785 | opp_overlap 1247037 1247043 1247063 1247066 AATCAGTATAAAAAA GGGGAGTCAG TGAAT CTGGCTCCCC TTGATATTTAAGGTG TERM 1487 1247043 - 1247067 + r 100 -13.6 -3.46285 | opp_overlap 1247043, overlap 1247037 1247063 1247066 AATCAGTATAAAAAA GGGGAGTCAG TGAAT CTGGCTCCCC TTGATATTTAAGGTG Shewana3_1062 1248450 - 1247092 - | nucleoside recognition domain-containing protein TERM 1488 1247635 - 1247646 + g 73 -3 -5.00616 | overlap 1247628 ACGTGGCGTATCGTC GATA TAGT TATC TTTTTTCCAGGACAG TERM 1489 1248824 - 1248837 + H 76 -8.1 -4.11304 | opp_overlap 1248823, overlap 1248834 AGATTCTTCGAATAT TCCGC TTTT GCGGA TTATTTATCCGTTAA TERM 1490 1249867 - 1249834 - g 81 -12.5 -3.32844 | opp_overlap 1249837 1249865 CTGCTTACTCCACAA TCACTCGCTCAGGAG CAAG CTCCCGAGTGAATGA TTAAGCTGATAGCCC Shewana3_1063 1249155 - 1249871 + | hypothetical protein TERM 1491 1249865 - 1249903 + T 80 -9.8 -3.68619 | opp_overlap 1249834 1249868 1249872, overlap 1249867 1249868 AAGCTCCCGAGTGAA TGATTAAGCTGATAGC CCATAAT GCTATCAGCTTAAGTA TTTCAGTAGCTTAAG TERM 1492 1249867 - 1249901 + T 80 -10.2 -3.42283 | opp_overlap 1249868 1249872, overlap 1249865 1249868 GCTCCCGAGTGAATG ATTAAGCTGATAGC CCATAAT GCTATCAGCTTAAG TATTTCAGTAGCTTA TERM 1493 1249868 - 1249900 + T 93 -13.7 -2.64888 | opp_overlap 1249868 1249872, overlap 1249867 1249865 CTCCCGAGTGAATGA TTAAGCTGATAGC CCATAAT GCTATCAGCTTAA GTATTTCAGTAGCTT TERM 1494 1249900 - 1249868 - T 93 -13.7 -2.75064 | opp_overlap 1249868 1249867 1249865, overlap 1249872 CTCCCGAGTGAATGA TTAAGCTGATAGC CCATAAT GCTATCAGCTTAA GTATTTCAGTAGCTT TERM 1495 1249896 - 1249872 - T 76 -10.1 -3.2827 | opp_overlap 1249868 1249867 1249865, overlap 1249868 CGAGTGAATGATTAA GCTGATAGC CCATAAT GCTATCAGC TTAAGTATTTCAGTA Shewana3_1064 1250823 - 1249906 - | peptidase U32 Shewana3_1065 1251811 - 1250810 - | peptidase U32 TERM 1496 1251125 - 1251135 + g 71 -6.8 -4.24342 | opp_overlap 1251124 1251121 GCCCTTACAGACGAC TGGG TAG CCCA TTTGTTCATCGAGCC Shewana3_1066 1251950 - 1252486 + | sterol-binding domain-containing protein TERM 1497 1252551 - 1252512 - T 100 -17.5 -2.60244 | gap 1, opp_overlap 1252521, overlap 1252516 1252521 GCTGTAATCAACCGA TAAAC-AAAAGCCCCGCT GACAT AGCGGGGCTTTTTGTTTA GCTTAAACGGTCGAT TERM 1498 1252546 - 1252516 - T 100 -14.1 -3.99898 | opp_overlap 1252521, overlap 1252512 1252521 TAATCAACCGATAAA CAAAAGCCCCGCT GACAT AGCGGGGCTTTTT GTTTAGCTTAAACGG TERM 1499 1252521 - 1252541 + T 100 -14.7 -5.33026 | opp_overlap 1252521 1252516 1252512 AACCGATAAACAAAA GCCCCGCTG ACA TAGCGGGGC TTTTTGTTTAGCTTA TERM 1500 1252541 - 1252521 - T 100 -14 -5.01553 | opp_overlap 1252521, overlap 1252516 1252512 AACCGATAAACAAAA GCCCCGCT GACAT AGCGGGGC TTTTTGTTTAGCTTA Shewana3_1067 1252824 - 1252573 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_1068 1254192 - 1252828 - | peptidase U32 Shewana3_1069 1254566 - 1255405 + | putative signal transduction protein TERM 1501 1255426 - 1255455 + F 89 -12.3 -2.7566 | gap 1, opp_overlap 1255425 GGGCCTATAGGGAAG CCATTCTTGCCCTG AGT CAGGG-GAGAATGG TGGTTAAGCTTACGT TERM 1502 1255572 - 1255592 + G 76 -6.7 -4.58283 | opp_overlap 1255572 1255573, overlap 1255573 CTCGCTAGATACCAA GCGCTGCGG TTA CAGCAGCGA TTTTTGGCGCAATTA TERM 1503 1255573 - 1255591 + G 75 -10.2 -3.34488 | opp_overlap 1255572 1255573, overlap 1255572 TCGCTAGATACCAAG CGCTGCGG TTA CAGCAGCG ATTTTTGGCGCAATT Shewana3_1070 1255491 - 1257017 + | diguanylate cyclase/phosphodiesterase Shewana3_1071 1257439 - 1257026 - | thioesterase superfamily protein TERM 1504 1257590 - 1257565 - R 100 -12.7 -5.07011 | opp_overlap 1257565 GACACAAAGTAAAAA GCCATATTCGC CGAA ACGAATATGGC TTTTTTGTAGGGTAA TERM 1505 1257565 - 1257590 + r 100 -12 -5.26316 | opp_overlap 1257565 GACACAAAGTAAAAA GCCATATTCG CCGAAA CGAATATGGC TTTTTTGTAGGGTAA Shewana3_1072 1258883 - 1257627 - | adenylosuccinate synthetase TERM 1506 1258230 - 1258244 + g 70 -2.8 -4.86033 | opp_overlap 1258230 TTGCGCTTCAAATAA CAAGTT AGC ATCTTG TTTTTGTAAGGCTTT Shewana3_1073 1259000 - 1259908 + | LysR family transcriptional regulator Shewana3_1074 1260742 - 1259924 - | extracellular solute-binding protein TERM 1507 1260280 - 1260292 + g 74 -7.7 -4.15222 | CGACTATGCTGCCTT TGGGA ATT TCCCA TTTATTGGCGGCGAT TERM 1508 1260349 - 1260336 - G 72 -3.7 -4.82901 | opp_overlap 1260344 TTGCGTTGATAAAAA GAGGC TTTC GCCAC AAATAGCGGCGTGTT Shewana3_1075 1260946 - 1261374 + | OsmC family protein TERM 1509 1261437 - 1261406 - T 100 -11.7 -4.09243 | opp_overlap 1261413, overlap 1261407 1261409 1261413 GATAGCGGCTTAAAA GCATAAACCCCAG AGTTTG CTGGGGTTTATGT CAATGATTATCAGCT TERM 1510 1261436 - 1261407 - T 100 -15.2 -3.05224 | opp_overlap 1261413, overlap 1261406 1261409 1261413 ATAGCGGCTTAAAAG CATAAACCCCAG AGTTTG CTGGGGTTTATG TCAATGATTATCAGC TERM 1511 1261434 - 1261409 - T 86 -12 -3.08211 | opp_overlap 1261413, overlap 1261407 1261406 1261413 AGCGGCTTAAAAGCA TAAACCCCAG AGTTTG CTGGGGTTTA TGTCAATGATTATCA TERM 1512 1261430 - 1261413 - T 79 -8.4 -4.208 | opp_overlap 1261413, overlap 1261409 1261407 1261406 GCTTAAAAGCATAAA CCCCAG AGTTTG CTGGGG TTTATGTCAATGATT TERM 1513 1261413 - 1261430 + T 77 -8.4 -4.07526 | opp_overlap 1261413 1261409 1261407 1261406 GCTTAAAAGCATAAA CCCCAG AGTTTG CTGGGG TTTATGTCAATGATT Shewana3_1076 1262083 - 1261463 - | TetR family transcriptional regulator TERM 1514 1262482 - 1262492 + G 86 -8.2 -4.61566 | overlap 1262480 ATATTGATGTTGACT GCCG TGG CGGC TTTTGTCCTTTCGGC Shewana3_1077 1262443 - 1263681 + | RND family efflux transporter MFP subunit Shewana3_1078 1263695 - 1266844 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 1515 1266894 - 1266877 - f 100 -11.3 -4.08767 | opp_overlap 1266877 GTTATCTCCTTAAAA GACCTGC AAAT GCAGGTC TTTTTTTATTTTTGC TERM 1516 1266877 - 1266894 + F 100 -11.3 -6.20267 | opp_overlap 1266877 GTTATCTCCTTAAAA GACCTGC AAAT GCAGGTC TTTTTTTATTTTTGC Shewana3_1079 1266968 - 1268236 + | metal dependent phosphohydrolase Shewana3_1080 1268769 - 1268257 - | hypothetical protein TERM 1517 1268535 - 1268512 - G 74 -7.4 -4.15222 | ACTGCGCTGAATAAA GGGCTTGAGC TTTA GCTCAAAACC AATATGTCTGAGCGC Shewana3_1081 1269650 - 1268883 - | AraC family transcriptional regulator TERM 1518 1269120 - 1269139 + g 82 -3.5 -5.28683 | overlap 1269122 AATTTCAATGGCCAT TTCCTGC AAGCTG GCGGGGA TTTTTTGCTGTTGCT Shewana3_1082 1269794 - 1270972 + | major facilitator transporter TERM 1519 1270980 - 1271000 + T 100 -12.6 -4.208 | opp_overlap 1270980 GAGCGTAAATAAAAA GCCAAGGG TGATT CCCTTGGC TTTATGGTTTTAACA TERM 1520 1271000 - 1270980 - T 100 -12.6 -5.28942 | opp_overlap 1270980 GAGCGTAAATAAAAA GCCAAGGG TGATT CCCTTGGC TTTATGGTTTTAACA Shewana3_1083 1274203 - 1271048 - | acriflavin resistance protein TERM 1521 1271747 - 1271767 + g 75 -8.9 -3.84648 | opp_overlap 1271743 1271742 ATCCAAAAACTTTAA GGCTTCGCC CAA GGTGTAGCC TTTACTGATGTTGGC TERM 1522 1272497 - 1272511 + g 86 -11.4 -4.07568 | CATACGGTTATAGCT GGTGCC TTC GGCACC TTTTACGAAGGCGAA Shewana3_1084 1275315 - 1274203 - | RND family efflux transporter MFP subunit Shewana3_1085 1276308 - 1275514 - | hypothetical protein TERM 1523 1276548 - 1276518 - R 100 -9.8 -5.00884 | opp_overlap 1276520, overlap 1276520 ATCGCCTCGAAAAAA TAGGGCTTATGG GGAAATG CCATAAGCCCTT AATCCTTTAATTTTC TERM 1524 1276520 - 1276546 + r 95 -12.4 -3.35901 | opp_overlap 1276520 1276518 CGCCTCGAAAAAATA GGGCTTATGG GGAAATG CCATAAGCCC TTAATCCTTTAATTT TERM 1525 1276546 - 1276520 - R 100 -12.4 -4.13561 | opp_overlap 1276520, overlap 1276518 CGCCTCGAAAAAATA GGGCTTATGG GGAAATG CCATAAGCCC TTAATCCTTTAATTT Shewana3_1086 1277731 - 1276574 - | metallophosphoesterase Shewana3_1087 1278278 - 1281949 + | undecaprenol kinase., rRNA (guanine-N(1)-)-methyltransferase Shewana3_1088 1281972 - 1282307 + | hypothetical protein TERM 1526 1282364 - 1282402 + T 72 -6.1 -4.41047 | gap 1, opp_overlap 1282367 1282370, overlap 1282365 1282368 GTACTCAGGGCTAAT ATATTACGCCTTAGGTAG TAAA CTTCCTAAGGCGTA-TGC TTTTAATTACCAACT TERM 1527 1282365 - 1282401 + T 74 -9.6 -3.24146 | gap 1, opp_overlap 1282367 1282370, overlap 1282364 1282368 TACTCAGGGCTAATA TATTACGCCTTAGGTAG TAAA CTTCCTAAGGCGTA-TG CTTTTAATTACCAAC TERM 1528 1282400 - 1282367 - T 93 -12.5 -3.07895 | opp_overlap 1282365 1282364 1282368, overlap 1282370 CTCAGGGCTAATATA TTACGCCTTAGGTAG TAAA CTTCCTAAGGCGTAT GCTTTTAATTACCAA TERM 1529 1282368 - 1282399 + T 100 -16 -3.18268 | opp_overlap 1282367 1282370, overlap 1282365 1282364 TCAGGGCTAATATAT TACGCCTTAGGTAG TAAA CTTCCTAAGGCGTA TGCTTTTAATTACCA TERM 1530 1282397 - 1282370 - T 95 -14.2 -2.75528 | opp_overlap 1282368 1282365 1282364, overlap 1282367 AGGGCTAATATATTA CGCCTTAGGTAG TAAA CTTCCTAAGGCG TATGCTTTTAATTAC Shewana3_1089 1283089 - 1282436 - | putative protein-disulfide isomerase TERM 1531 1283194 - 1283173 - R 80 -11.5 -2.68786 | overlap 1283172 TACATCAGAATGAAT GGGGCAGGG AATA CCGTGCCCC GATGCGCTTACATGG Shewana3_1090 1284101 - 1283202 - | beta-lactamase domain-containing protein TERM 1532 1284994 - 1285010 + G 70 -8.7 -3.53012 | opp_overlap 1285005 GCCAATGACTCTATG GTGGTGT TAA ACGCCAC TTTGGCGGGGGAGGG TERM 1533 1285017 - 1285005 - g 70 -9.1 -3.53224 | opp_overlap 1284994 TATGGTGGTGTTAAA CGCCA CTT TGGCG GGGGAGGGAATTGCC Shewana3_1091 1284289 - 1285212 + | LysR family transcriptional regulator TERM 1534 1285608 - 1285650 + G 76 -8.4 -4.14013 | CGGACTCTTGGCTAA CAGCGCAGCGGTGGTCATTG GCG CCATGATTGTCGCTATGCTG TTTTCCCCCATTTTA Shewana3_1092 1285477 - 1286484 + | hypothetical protein TERM 1535 1286515 - 1286532 + T 100 -14.1 -4.10188 | opp_overlap 1286515 GTGTATCAAAGAAAA GCCCCGC AATT GCGGGGC TTATTTGTACCTGTA TERM 1536 1286532 - 1286515 - T 100 -14.1 -4.93877 | opp_overlap 1286515 GTGTATCAAAGAAAA GCCCCGC AATT GCGGGGC TTATTTGTACCTGTA Shewana3_1093 1288227 - 1286560 - | putative ABC transporter ATP-binding protein TERM 1537 1287724 - 1287711 - G 74 -8.1 -4.03078 | GCAGCAGACGACAAA TCGCC ACAC GGCGA CGCTCACCACCCGAT TERM 1538 1287901 - 1287921 + g 74 -9.7 -3.5771 | GGGATCGGCGTAAGC CGCATAGAC TTC GTCTAAGCG TTTGAGGGCATTTTT TERM 1539 1288441 - 1288430 - g 73 -3 -5.055 | GCAATGCTGAAAAAA GATA TGAA TATC GCAGATTATGATCCG glyA 1288418 - 1289671 + | serine hydroxymethyltransferase TERM 1540 1289769 - 1289787 + F 100 -11.7 -5.1356 | opp_overlap 1289766 1289765 TAGGATAAAATCCCA TGGCCGC ATTAA GCGGCCA TTTTTATTGCTAAAA Shewana3_1095 1289882 - 1290331 + | transcriptional regulator NrdR TERM 1541 1290574 - 1290554 - g 74 -4.5 -4.77036 | overlap 1290555 1290556 GGTTATCATCAAAAA GCCGGCGAG CCC CACGCCGAG GTGCATGCACTGCGC TERM 1542 1291414 - 1291398 - g 74 -6.6 -4.31379 | ATCAAGCGATGAAAA TCCTTG GGGCA CAAGGA CGTAATCTACTCGAA Shewana3_1096 1290407 - 1291552 + | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase Shewana3_1097 1291560 - 1292216 + | riboflavin synthase subunit alpha Shewana3_1098 1292284 - 1293387 + | GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 1543 1293540 - 1293528 - g 76 -6.3 -4.69656 | AATTAGGTAAGAAAA TGAAC GTA GTTCA AGGTAATATCGAAGC Shewana3_1099 1293461 - 1294003 + | 6,7-dimethyl-8-ribityllumazine synthase nusB 1294018 - 1294422 + | transcription antitermination protein NusB TERM 1544 1294456 - 1294427 - f 89 -12.3 -2.89081 | opp_overlap 1294433, overlap 1294433 CACGTAAGTAATAAG GACAAACGGTATC TTAG GATACCGTTTTTC ATTGCTAACAAAGGT TERM 1545 1294450 - 1294433 - f 88 -9.9 -4.14859 | opp_overlap 1294433, overlap 1294427 AGTAATAAGGACAAA CGGTATC TTAG GATACCG TTTTTCATTGCTAAC TERM 1546 1294433 - 1294450 + F 100 -9.9 -4.90266 | opp_overlap 1294427 1294433 AGTAATAAGGACAAA CGGTATC TTAG GATACCG TTTTTCATTGCTAAC Shewana3_1101 1294501 - 1295457 + | thiamine-monophosphate kinase TERM 1547 1295478 - 1295495 + G 79 -12.7 -3.07895 | opp_overlap 1295477 1295480, overlap 1295480 TTGTTATCCCAAGAT CAGGCGC TGTC GCGCCTG TCTCTTAAAAATCCG TERM 1548 1295852 - 1295877 + G 80 -11.9 -3.4072 | overlap 1295859 AATTCGTTGGCTCGA TGCCAAGGTCG AAGG CGGCTTTGGCA TTATGATAGACGATG Shewana3_1102 1295457 - 1295951 + | phosphatidylglycerophosphatase TERM 1549 1295975 - 1296002 + T 100 -14.2 -5.10033 | opp_overlap 1295975 ATTGGTGTTAATTAA GCCGCCGTTAGT GAAG ACTAAAGGCGGC TTTTGTTTGTATTGA TERM 1550 1296002 - 1295975 - T 100 -14.2 -3.33815 | opp_overlap 1295975 ATTGGTGTTAATTAA GCCGCCGTTAGT GAAG ACTAAAGGCGGC TTTTGTTTGTATTGA Shewana3_1103 1296897 - 1296022 - | hypothetical protein TERM 1551 1297106 - 1297125 + r 88 -10.8 -3.84406 | opp_overlap 1297101 TAAAAATTTATTCAT TCACCCTT CACT AAGGGTGA TTGTTATCATCAGAG TERM 1552 1297252 - 1297274 + r 78 -9.2 -3.5947 | opp_overlap 1297252 CTGCACAATAAAAAA TGAAGGCTCT CTC AGAACCTTCA TTATGTGTACACCTT TERM 1553 1297274 - 1297252 - R 100 -11.4 -5.55769 | opp_overlap 1297252 CTGCACAATAAAAAA TGAAGGCTCT CTC AGAACCTTCA TTATGTGTACACCTT Shewana3_1104 1298971 - 1297313 - | recombination and repair protein Shewana3_1105 1300063 - 1299101 - | transporter, putative TERM 1554 1300949 - 1300966 + G 74 -2 -5.13722 | gap 1, opp_overlap 1300948 1300951, overlap 1300944 1300951 AACTGGCACTTAAAG C-ACTCG AATGG CGAGTCG TTTTATTTTAATGGC Shewana3_1106 1300340 - 1301239 + | LysR family transcriptional regulator Shewana3_1107 1301478 - 1301245 - | hypothetical protein TERM 1555 1301835 - 1301799 - R 74 -9.5 -3.3197 | opp_overlap 1301799, overlap 1301801 ATACGATTGGTATAA GATGCTACCTAATAGTG AAC CACTCTTAGGTAGCAGG GCTCACTTACGCGAC TERM 1556 1301833 - 1301801 - R 100 -16.5 -3.22653 | opp_overlap 1301799, overlap 1301799 ACGATTGGTATAAGA TGCTACCTAATAGTG AAC CACTCTTAGGTAGCA GGGCTCACTTACGCG Shewana3_1108 1302441 - 1301842 - | hypothetical protein Shewana3_1109 1305223 - 1302416 - | hybrid sensory histidine kinase BarA TERM 1557 1302532 - 1302556 + gH 78 -9.3 -3.65827 | CTAGTATTTCCGGTT CGAGATCTTCG ACA CGAGCATCTCG TTTCAATGCCGATTC TERM 1558 1304326 - 1304347 + gH 100 -8.7 -5.09895 | gap 1, opp_overlap 1304326, overlap 1304327 AGAATTCCGACTTAA TGCG-GCTGG CCT CCAGCGCGCG TTTTTTGGCTAAGTC TERM 1559 1304327 - 1304346 + gH 80 -10 -3.65214 | gap 1, opp_overlap 1304326, overlap 1304326 GAATTCCGACTTAAT GCG-GCTGG CCT CCAGCGCGC GTTTTTTGGCTAAGT TERM 1560 1304675 - 1304660 - GH 71 -6 -4.39277 | opp_overlap 1304662 1304663 1304666, overlap 1304662 CAAGACGATAATAAA GGCGGC CACG GCGGCC CTGTGTTGTTCGAGT rumA 1305325 - 1306674 + | 23S rRNA 5-methyluridine methyltransferase Shewana3_1111 1306864 - 1309071 + | (p)ppGpp synthetase I, SpoT/RelA TERM 1561 1309128 - 1309104 - f 100 -11.4 -5.00884 | opp_overlap 1309104 ATGCGTTGTAAAAAA GCGGTAGGGC ATAAA GCGCTACCGC TTTTTTATTTTCAGC TERM 1562 1309104 - 1309128 + F 100 -11.4 -5.79595 | opp_overlap 1309104 ATGCGTTGTAAAAAA GCGGTAGGGC ATAAA GCGCTACCGC TTTTTTATTTTCAGC TERM 1563 1309169 - 1309150 - f 71 -8.6 -3.57263 | opp_overlap 1309150 1309151, overlap 1309151 ATTTTCAGCCCTAAA CCACCTTC TTCA GAAGGTGA TTTCTTTACTTGATA TERM 1564 1309150 - 1309169 + F 77 -6.4 -4.58308 | opp_overlap 1309150 1309151, overlap 1309151 ATTTTCAGCCCTAAA CCACCTTC TTCA GAAGGTGA TTTCTTTACTTGATA TERM 1565 1309168 - 1309151 - f 72 -9.9 -2.74144 | opp_overlap 1309150 1309151, overlap 1309150 TTTTCAGCCCTAAAC CACCTTC TTCA GAAGGTG ATTTCTTTACTTGAT TERM 1566 1309151 - 1309168 + F 76 -9.9 -3.33901 | opp_overlap 1309151 1309150, overlap 1309150 TTTTCAGCCCTAAAC CACCTTC TTCA GAAGGTG ATTTCTTTACTTGAT TERM 1567 1310204 - 1310229 + G 73 -10.5 -3.32844 | TCAGTAGTCGGAACT GTCATCGTGAC CCCA GTCATGGTGAC TTATACCGTCACGGG Shewana3_1112 1309586 - 1312291 + | hypothetical protein TERM 1568 1312414 - 1312389 - f 71 -9 -3.38201 | opp_overlap 1312389, overlap 1312387 1312392 GAATAGTTGTAAAGA GAAGGTCAGC AATCCA GCTGGCCTTC TTTTTTGGGGATTGC TERM 1569 1312389 - 1312414 + F 100 -11.2 -5.055 | opp_overlap 1312389 1312387 1312392 GAATAGTTGTAAAGA GAAGGTCAGC AATCCA GCTGGCCTTC TTTTTTGGGGATTGC Shewana3_1113 1312426 - 1312629 + | hypothetical protein mazG 1312902 - 1313780 + | nucleoside triphosphate pyrophosphohydrolase Shewana3_1115 1313897 - 1315537 + | CTP synthetase TERM 1570 1315576 - 1315541 - f 76 -11 -2.63182 | opp_overlap 1315545, overlap 1315540 1315539 CTGAAGAAATAAATT TTAAGGCCGGACCCGC GACA GTGGGCCCGGCCTTTT GTTACACTCAGGCCG TERM 1571 1315545 - 1315572 + F 100 -16.2 -4.65916 | opp_overlap 1315541 1315540 1315539 AGAAATAAATTTTAA GGCCGGACCCGC GACA GTGGGCCCGGCC TTTTGTTACACTCAG TERM 1572 1316294 - 1316284 - g 71 -5.4 -4.56597 | opp_overlap 1316284 TGTTGGCGCGAAAAA CTTC CGC GAAG CTTTACGTATGGGCG Shewana3_1116 1315751 - 1317046 + | enolase TERM 1573 1317085 - 1317068 - f 100 -12.7 -4.65895 | opp_overlap 1317068 CGTCTGATGTAAAAA GGCCACC ACTT GGTGGCC TTTTTTGTTGTACTA TERM 1574 1317068 - 1317085 + F 100 -12.7 -5.58179 | opp_overlap 1317068 CGTCTGATGTAAAAA GGCCACC ACTT GGTGGCC TTTTTTGTTGTACTA Shewana3_1117 1317147 - 1317446 + | cell division protein FtsB Shewana3_1118 1317457 - 1318206 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Shewana3_1119 1318258 - 1318737 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Shewana3_1120 1318767 - 1319894 + | tRNA pseudouridine synthase D, TruD Shewana3_1121 1319891 - 1320640 + | 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase Shewana3_1122 1320637 - 1321272 + | protein-L-isoaspartate O-methyltransferase Shewana3_1123 1321357 - 1322253 + | peptidase M23B Shewana3_1124 1322334 - 1323314 + | RNA polymerase, sigma 38 subunit, RpoS TERM 1575 1323389 - 1323349 - T 100 -12.2 -3.97674 | gap 1, opp_overlap 1323350 1323351 1323353 1323361, overlap 1323350 1323353 1323361 CCACCAGTTAAACAA GTCATAAAAAAACGCCC AATTTTGA GGGCGTTTTTTTATG-C TTTCACTTTTATGCT TERM 1576 1323389 - 1323350 - T 93 -12.4 -2.98122 | opp_overlap 1323350 1323351 1323353 1323361, overlap 1323349 1323353 1323361 CACCAGTTAAACAAG TCATAAAAAAACGCCC AATTTTGA GGGCGTTTTTTTATGC TTTCACTTTTATGCT TERM 1577 1323350 - 1323389 + T 100 -12.4 -3.97308 | opp_overlap 1323349 1323350 1323353 1323361, overlap 1323351 1323353 1323361 CACCAGTTAAACAAG TCATAAAAAAACGCCC AATTTTGA GGGCGTTTTTTTATGC TTTCACTTTTATGCT TERM 1578 1323351 - 1323388 + T 100 -15.9 -2.973 | opp_overlap 1323349 1323350 1323353 1323361, overlap 1323350 1323353 1323361 ACCAGTTAAACAAGT CATAAAAAAACGCCC AATTTTGA GGGCGTTTTTTTATG CTTTCACTTTTATGC TERM 1579 1323353 - 1323386 + T 93 -12.7 -3.02807 | opp_overlap 1323349 1323350 1323353 1323361, overlap 1323351 1323350 1323361 CAGTTAAACAAGTCA TAAAAAAACGCCC AATTTTGA GGGCGTTTTTTTA TGCTTTCACTTTTAT TERM 1580 1323386 - 1323353 - T 88 -12.7 -2.71815 | opp_overlap 1323353 1323351 1323350 1323361, overlap 1323349 1323350 1323361 CAGTTAAACAAGTCA TAAAAAAACGCCC AATTTTGA GGGCGTTTTTTTA TGCTTTCACTTTTAT TERM 1581 1323378 - 1323361 - T 91 -5.5 -5.66684 | opp_overlap 1323353 1323351 1323350 1323361, overlap 1323353 1323349 1323350 CAAGTCATAAAAAAA CGCCC AATTTTGA GGGCG TTTTTTTATGCTTTC TERM 1582 1323361 - 1323378 + T 95 -5.5 -5.75599 | opp_overlap 1323361 1323353 1323349 1323350, overlap 1323353 1323351 1323350 CAAGTCATAAAAAAA CGCCC AATTTTGA GGGCG TTTTTTTATGCTTTC Shewana3_1125 1326014 - 1323429 - | DNA mismatch repair protein TERM 1583 1324131 - 1324118 - G 70 -9.5 -3.31792 | opp_overlap 1324115 CCATTAGCGTGATAA GCGCC ACTT GGCGC ATGTAGGTTGATTTA TERM 1584 1324386 - 1324427 + g 73 -6.1 -4.56597 | gap 1 GGCTTGTAGCTCATG CAACTTGGGGA-GGATTA AATCAAA TAATTCGTCCCAAAGTTG TTTTTCAAGGGCAAG TERM 1585 1325970 - 1325981 + g 70 -3 -4.88736 | CAAATATTGACGCAT CATA GGGG TATG TTTTTCTAAATCATC recA 1326397 - 1327470 + | recombinase A TERM 1586 1327488 - 1327517 + F 100 -14.3 -3.01712 | gap 1, opp_overlap 1327489 CAGTCTGCCCGTCAA ATCGCGGTCGCGCT GTT AGCGCG-CCGCGAC TATTCCCGCCAAGAA TERM 1587 1327516 - 1327489 - f 100 -17.8 -3.53091 | gap 1, opp_overlap 1327488 AGTCTGCCCGTCAAA TCGCGGTCGCGCT GTT AGCGCG-CCGCGA CTATTCCCGCCAAGA TERM 1588 1327587 - 1327609 + G 76 -7 -4.43844 | opp_overlap 1327576, overlap 1327576 GATATCGATCCCGTG CTCGATGATT GTG AAGCATCGGG TTTTATCAATGATAA Shewana3_1127 1327584 - 1327955 + | regulatory protein RecX TERM 1589 1330155 - 1330142 - g 82 -3.7 -5.33026 | opp_overlap 1330142 1330143, overlap 1330143 GAAGCCAAAGAAAAA GGCGC AATG GCGCT CTTTGGTGAGAAGTA Shewana3_1128 1328231 - 1330855 + | alanyl-tRNA synthetase TERM 1590 1330923 - 1330952 + G 70 -11.5 -2.70932 | AGAAGTTTGGTGGCA CTTCGGTGGGTTC GATT GAACGCATCGAAG TGGTTGCCGAGCAAA TERM 1591 1331056 - 1331096 + G 83 -14.8 -2.62184 | gap 1, opp_overlap 1331042 1331039 1331037 1331061, overlap 1331061 ATTTGCGCTTGCGGC GCAAATCGA-TCCCCGCGC GAGT GCGCGGGAACTCGATATGC TGGTCTCGACGGGAG TERM 1592 1331061 - 1331091 + G 74 -11.9 -2.84634 | gap 1, opp_overlap 1331039 1331037 1331061, overlap 1331056 CGCTTGCGGCGCAAA TCGA-TCCCCGCGC GAGT GCGCGGGAACTCGA TATGCTGGTCTCGAC TERM 1593 1331091 - 1331061 - g 89 -14.1 -3.53012 | gap 1, opp_overlap 1331056 1331061, overlap 1331039 1331037 CGCTTGCGGCGCAAA TCGA-TCCCCGCGC GAGT GCGCGGGAACTCGA TATGCTGGTCTCGAC Shewana3_1129 1330865 - 1332121 + | aspartate kinase Shewana3_1130 1332240 - 1332437 + | carbon storage regulator, CsrA / carbon storage regulator, CsrA TERM 1594 1332466 - 1332497 + T 100 -8.2 -5.00616 | opp_overlap 1332473, overlap 1332473 CGAGTATTAGCGACA TAGAAGAGTCAGTT TTTT AACTGGCTTTTTTA TTTTTTGAACCGAAA TERM 1595 1332473 - 1332490 + T 100 -6.3 -6.04324 | opp_overlap 1332473, overlap 1332466 TAGCGACATAGAAGA GTCAGTT TTTT AACTGGC TTTTTTATTTTTTGA TERM 1596 1333676 - 1333655 - T 100 -14.5 -3.53722 | opp_overlap 1333655 GTTAGATTTAGATAA GCCCTGCAA GCAA TTGCAGGGC TTTTTTAATGAAATT TERM 1597 1333655 - 1333676 + T 100 -14.5 -5.16237 | opp_overlap 1333655 GTTAGATTTAGATAA GCCCTGCAA GCAA TTGCAGGGC TTTTTTAATGAAATT TERM 1598 1334016 - 1333998 - T 100 -8.8 -5.27335 | opp_overlap 1333998 TTGGGGAAATAAAAA GGGCTGTA AAA TGCAGCCC TTTTTAGCGTAGATG TERM 1599 1333998 - 1334016 + T 100 -11 -4.62783 | opp_overlap 1333998 TTGGGGAAATAAAAA GGGCTGTA AAA TGCAGCCC TTTTTAGCGTAGATG valS 1336914 - 1334038 - | valyl-tRNA synthetase TERM 1600 1336314 - 1336336 + g 90 -6.3 -5.26247 | gap 1, opp_overlap 1336314 CGGCTAATGGATAAC GCAGGTGCCA CATG TGGC-CTTGC TTTTCTTTGTTTTCC Shewana3_1132 1337394 - 1336930 - | DNA polymerase III chi subunit, HolC TERM 1601 1336999 - 1337022 + g 83 -9.6 -4.24745 | TAAGCCACGATATTG GCGATAGCGT TCAC GTGCTATCGC TTTATGTTGGTCGTC TERM 1602 1337630 - 1337613 - R 100 -12.7 -4.30161 | opp_overlap 1337613, overlap 1337608 GGATATAAAAGCAAA GCGCACC CGAA GGTGCGC TGGTTGAAAGACTGG TERM 1603 1337613 - 1337630 + r 88 -12.7 -2.71364 | opp_overlap 1337608 1337613 GGATATAAAAGCAAA GCGCACC CGAA GGTGCGC TGGTTGAAAGACTGG TERM 1604 1338125 - 1338138 + r 74 -6.7 -4.33767 | opp_overlap 1338136, overlap 1338134 CTTTATGATCGACTC GTGTG TTAA CACAC TTTTAGTGCGTTTGT Shewana3_1133 1338944 - 1338588 - | SSU ribosomal protein S30P / sigma 54 modulation protein Shewana3_1134 1339242 - 1339931 + | cytochrome B561 TERM 1605 1339977 - 1339945 - T 86 -12.2 -3.05066 | opp_overlap 1339953, overlap 1339953 AACAAGTGCTGAACA TTAAAAAAGCCTGC ATGTA GCAGGCTTTTTTAT TAGACATTACAACGC TERM 1606 1339953 - 1339969 + T 100 -9.4 -5.45652 | opp_overlap 1339953 1339945 CTGAACATTAAAAAA GCCTGC ATGTA GCAGGC TTTTTTATTAGACAT TERM 1607 1339969 - 1339953 - T 100 -9.4 -5.27779 | opp_overlap 1339953, overlap 1339945 CTGAACATTAAAAAA GCCTGC ATGTA GCAGGC TTTTTTATTAGACAT Shewana3_1135 1340446 - 1339997 - | cytochrome c, class II TERM 1608 1340093 - 1340111 + g 73 -5.2 -4.64334 | overlap 1340094 ACCTTTTTGAGCCAC AGTCGCTA AAA TAGCGGCA TTTTCTTGGAAGGTT Shewana3_1136 1340636 - 1340911 + | Trp operon repressor Shewana3_1137 1341319 - 1340942 - | hypothetical protein TERM 1609 1341465 - 1341442 - R 100 -11.8 -5.93809 | opp_overlap 1341438 1341442 TGTGGATAAAAAAAA GCACCTCCTT ATGT AAGGAAGTGC TTCATTATCTTGCTC TERM 1610 1341442 - 1341465 + r 76 -9.6 -3.55453 | opp_overlap 1341442, overlap 1341438 TGTGGATAAAAAAAA GCACCTCCTT ATGT AAGGAAGTGC TTCATTATCTTGCTC Shewana3_1138 1342181 - 1341513 - | peptidylprolyl isomerase, FKBP-type TERM 1611 1342051 - 1342062 + g 71 -5.8 -4.37886 | AATGCAGCTTCTAAT CCTG GGAT CAGG TTTTCTGCACCGTGC TERM 1612 1342747 - 1342771 + H 100 -12.9 -5.72622 | opp_overlap 1342744, overlap 1342759 GAATTTTAACGACGA GCCCGCTTC CCACAAA GAAGCGGGC TTTTTTGTTTCTAGC TERM 1613 1344421 - 1344395 - g 76 -8 -4.17523 | AAACAATTGGCAAAA CCTGCTTGCCGA CAG TCAGCAACCAAG CGATCTTTCTGCGCT thrA 1342824 - 1345292 + | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 1614 1345578 - 1345564 - g 84 -2.1 -5.63504 | gap 1, opp_overlap 1345565, overlap 1345565 1345566 AACCCTAGAAAAAAA CTTGCC CGTC GGCA-G TGGCTTAGGTTCGAG Shewana3_1140 1345289 - 1346227 + | homoserine kinase TERM 1615 1346564 - 1346578 + G 71 -7.1 -4.18018 | CGGTCGATGAGCAGC GCTCG TGCCT CGAGC TTTTCCATGGGCCAA TERM 1616 1346700 - 1346718 + G 74 -8 -4.09864 | CTCGGGTGACACTGG GGCGGCGG TGG CCGATGCC TTTTACGGCCTAGAT Shewana3_1141 1346293 - 1347576 + | threonine synthase TERM 1617 1347609 - 1347626 + F 100 -11.3 -5.04385 | opp_overlap 1347609 AAACCATTGGTAAAA GGGAGTC GATT GACTCCC TTTTTTACAAGTGTA TERM 1618 1347626 - 1347609 - f 100 -11.3 -4.13304 | opp_overlap 1347609 AAACCATTGGTAAAA GGGAGTC GATT GACTCCC TTTTTTACAAGTGTA Shewana3_1142 1347843 - 1348136 + | hypothetical protein TERM 1619 1349122 - 1349100 - g 73 -9.2 -3.78351 | ATAAATGGCAGCAAA TTTCGTTGGC GCA GCAAACGAAA ACCAGTCATCAGTTT Shewana3_1143 1348307 - 1349182 + | extracellular solute-binding protein Shewana3_1144 1349390 - 1352671 + | peptidase S41 TERM 1620 1352676 - 1352663 - T 73 -5.3 -4.71223 | GCAGAAGACATAAAA GCTAA GTAA TTAGC TTAAAAAATAGAAAT TERM 1621 1352742 - 1352772 + T 100 -14.8 -5.60993 | TTGGTTCAATGTTAG GGTGTTGTCTTGTG GTT CCCGAGACAACACC TTTTTTTATGCCCAC Shewana3_1145 1353200 - 1352778 - | hypothetical protein TERM 1622 1353105 - 1353145 + g 70 -9.6 -3.23042 | gap 1, overlap 1353102 1353106 TAGGGTCACAGTGCT C-GCGCTGGCGGGTGCGGC TGTT GCCGTACCCGTCGTGGCTG TTGCTGCTGGCTGTT TERM 1623 1353106 - 1353143 + g 81 -13.3 -3.17527 | overlap 1353102 1353105 AGGGTCACAGTGCTC GCGCTGGCGGGTGCGGC TGTT GCCGTACCCGTCGTGGC TGTTGCTGCTGGCTG Shewana3_1146 1353767 - 1353330 - | OsmC family protein TERM 1624 1353831 - 1353855 + r 76 -9.3 -3.54459 | gap 1, overlap 1353831 AGACTTCTCCAGCAT GG-GGCGCAC AGTTTA GTGCGCCGCC TTTGAAACGACTTAG Shewana3_1147 1354217 - 1353867 - | hypothetical protein Shewana3_1148 1355896 - 1354214 - | PepSY-associated TM helix domain-containing protein Shewana3_1149 1356266 - 1355898 - | hypothetical protein Shewana3_1150 1356690 - 1358258 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Shewana3_1151 1358491 - 1358847 + | sigma 54 modulation protein / SSU ribosomal protein S30P TERM 1625 1358858 - 1358905 + T 88 -10 -4.21607 | opp_overlap 1358868 1358875, overlap 1358868 1358875 GCTAGGATTAAGCCT TAGGATGCAATAAAAAAGGGCC AACT GGCCCTTTTTTATTGGTTGCGA TTTGTCTTAAATCAA TERM 1626 1358868 - 1358895 + T 100 -15.8 -3.39471 | opp_overlap 1358868 1358875, overlap 1358858 1358875 AGCCTTAGGATGCAA TAAAAAAGGGCC AACT GGCCCTTTTTTA TTGGTTGCGATTTGT TERM 1627 1358895 - 1358868 - T 100 -15.8 -3.09635 | opp_overlap 1358858 1358868 1358875, overlap 1358875 AGCCTTAGGATGCAA TAAAAAAGGGCC AACT GGCCCTTTTTTA TTGGTTGCGATTTGT TERM 1628 1358888 - 1358875 - T 100 -9.5 -5.4833 | opp_overlap 1358868 1358858 1358875, overlap 1358868 GGATGCAATAAAAAA GGGCC AACT GGCCC TTTTTTATTGGTTGC TERM 1629 1358875 - 1358888 + T 100 -9.5 -5.5604 | opp_overlap 1358875 1358868, overlap 1358868 1358858 GGATGCAATAAAAAA GGGCC AACT GGCCC TTTTTTATTGGTTGC Shewana3_1152 1359663 - 1358986 - | two component LuxR family transcriptional regulator Shewana3_1153 1360868 - 1359708 - | putative signal transduction histidine kinase TERM 1630 1361184 - 1361209 + H 100 -16.2 -5.19916 | opp_overlap 1361176 1361187 AAAAAATCGATTACT CAACCCCGCC CAAAGT GGCGGGGTTG TTTTTTCCGTCTTTT TERM 1631 1361206 - 1361187 - H 86 -12.1 -3.10908 | opp_overlap 1361184, overlap 1361176 AAATCGATTACTCAA CCCCGCC CAAAGT GGCGGGG TTGTTTTTTCCGTCT Shewana3_1154 1361248 - 1361793 + | isochorismatase hydrolase TERM 1632 1361833 - 1361804 - T 100 -13.7 -4.1822 | opp_overlap 1361810, overlap 1361810 GTTGATGCCAACAAA CAAAAACGCAGCC CTTA GGCTGCGTTTTTT GATATCAGAATCAAC TERM 1633 1361827 - 1361810 - T 100 -12.7 -5.47159 | opp_overlap 1361810, overlap 1361804 GCCAACAAACAAAAA CGCAGCC CTTA GGCTGCG TTTTTTGATATCAGA TERM 1634 1361810 - 1361827 + T 100 -12.7 -5.21709 | opp_overlap 1361810 1361804 GCCAACAAACAAAAA CGCAGCC CTTA GGCTGCG TTTTTTGATATCAGA Shewana3_1155 1362571 - 1361849 - | hypothetical protein TERM 1635 1364466 - 1364502 + G 83 -10.1 -4.20354 | TGATGCATGATTTGT CCGTCCCGATTTATGTC AAT GGCAAACATTGGGGCGG TTTTAGGGTTGGATT Shewana3_1156 1362962 - 1364533 + | methyl-accepting chemotaxis sensory transducer Shewana3_1157 1364849 - 1365073 + | hypothetical protein TERM 1636 1365137 - 1365114 - T 84 -9.7 -3.85165 | opp_overlap 1365114 1365108 CACTTGAAACTTAAA GGACGATAA GTGGAT TTATCGTCC TTTTGCGTTTTTGGG TERM 1637 1365114 - 1365137 + T 100 -10.4 -4.4874 | opp_overlap 1365114, overlap 1365108 CACTTGAAACTTAAA GGACGATAAG TGGA TTTATCGTCC TTTTGCGTTTTTGGG TERM 1638 1365150 - 1365174 + T 74 -6.4 -4.52589 | gap 1, overlap 1365152 TCCTTTTGCGTTTTT GGGGCG-GCTT AACT AAGCACGCCGC TTTTATCTGCAGACA Shewana3_1158 1365758 - 1365177 - | TetR family transcriptional regulator TERM 1639 1365638 - 1365652 + g 72 -10 -3.37522 | opp_overlap 1365636 CGCAATAAATGGAGC CGGGAT GTA ATCCCG TTGCTTGGGTCAGAT TERM 1640 1365844 - 1365803 - H 83 -11.9 -2.61274 | opp_overlap 1365802 1365813, overlap 1365802 1365813 CTGATTCTAACTAAT TTTGAACAAACATTCAAAA ATGT TCTTGAATGATCGTTCAAA TAAGAATATCTTGAA TERM 1641 1365834 - 1365813 - H 71 -6.7 -4.183 | opp_overlap 1365802 1365813, overlap 1365803 1365802 CTAATTTTGAACAAA CATTCAAAA ATGT TCTTGAATG ATCGTTCAAATAAGA TERM 1642 1365872 - 1365853 - H 70 -8 -3.63464 | overlap 1365851 1365864 GTTCAAATAAGAATA TCTTGAAT GCAC ATTCAAGA ATGGGGCAACACCAA Shewana3_1159 1365887 - 1366954 + | NADH:flavin oxidoreductase/NADH oxidase TERM 1643 1367000 - 1366982 - T 100 -13.2 -4.33819 | opp_overlap 1366982 ATTACCGATAAGAAA GGGTTAGC TTA GCTAACCC TTTTGCTTTTGGTTC TERM 1644 1366982 - 1367000 + T 100 -13.2 -4.72729 | opp_overlap 1366982 ATTACCGATAAGAAA GGGTTAGC TTA GCTAACCC TTTTGCTTTTGGTTC Shewana3_1160 1369438 - 1367021 - | ATP-dependent protease, putative TERM 1645 1367310 - 1367325 + g 83 -3.3 -5.37593 | opp_overlap 1367310, overlap 1367312 TTAATCTTACACACA TCGAA AAAGCC TTCGA TTTTTTCATTTACGC TERM 1646 1368679 - 1368668 - G 73 -5.8 -4.58283 | opp_overlap 1368668 1368667 CAAGGGTTTGAAAAA GTGC ACCA GCAC ATCTTTAGCGACTTG Shewana3_1161 1369855 - 1372491 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Shewana3_1162 1372641 - 1373870 + | DEAD/DEAH box helicase domain-containing protein TERM 1647 1373944 - 1373965 + T 100 -15.9 -5.61881 | opp_overlap 1373940 TGATTTAGATACTTA TCCGCCCCA GAGA TGGGGCGGA TTTTTGTTTTTCAAC Shewana3_1163 1374648 - 1374139 - | hypothetical protein TERM 1648 1375778 - 1375764 - g 70 -8.6 -3.66874 | TCAAGTGTACTTAAA TCCTCA CCC TGAGGA ATTAAAGCTGCGCTA Shewana3_1164 1374850 - 1375803 + | hypothetical protein TERM 1649 1376267 - 1376244 - g 76 -6 -4.71828 | ACTGGATCAACAAAA GCTGCACCAA ATCC TTGATGAAGC CCTAGGTTTATATCC TERM 1650 1376499 - 1376489 - g 74 -2.4 -5.09426 | TCCAAGGGCAAAAAA CGGC CGA GCAG CTTAGCGGTCAGTCG Shewana3_1165 1375876 - 1376934 + | MerR family transcriptional regulator TERM 1651 1377206 - 1377216 + G 70 -2.4 -5.03145 | opp_overlap 1377206 CTCGATAGCTTTAAA GAGG TGC CCGC TTTTTTAGCAAGTTA TERM 1652 1377654 - 1377634 - g 74 -9.7 -3.52341 | opp_overlap 1377637 AGTCCAAGACTATAA GCAGGATAG GGA CTTTCCTGC TCTCGATGGCACCAG TERM 1653 1378303 - 1378284 - g 74 -2.1 -5.1615 | CCAATATGCAAAAAA CGCCT TCGTTATTTG AGGCG CCAATGCTGGAGTCT Shewana3_1166 1376924 - 1378405 + | deoxyribodipyrimidine photo-lyase type I Shewana3_1167 1378451 - 1378897 + | transcriptional regulator-related protein TERM 1654 1378936 - 1378922 - g 71 -5 -4.58466 | overlap 1378926 1378928 TGCAGAACCACAAAA TCAACA CTG TGCTGA TCACAGGGGCAAGCT Shewana3_1168 1378897 - 1379697 + | short-chain dehydrogenase/reductase SDR Shewana3_1169 1379694 - 1380944 + | amine oxidase Shewana3_1170 1380941 - 1381735 + | hypothetical protein Shewana3_1171 1381737 - 1382993 + | cyclopropane-fatty-acyl-phospholipid synthase Shewana3_1172 1383006 - 1383551 + | hypothetical protein Shewana3_1173 1383605 - 1384177 + | hypothetical protein Shewana3_1174 1384165 - 1384713 + | hypothetical protein Shewana3_1175 1384798 - 1385019 + | hypothetical protein Shewana3_1176 1385458 - 1385114 - | hypothetical protein Shewana3_1177 1385612 - 1385797 + | hypothetical protein TERM 1655 1385849 - 1385815 - f 95 -13 -3.11604 | opp_overlap 1385817, overlap 1385817 1385824 TACTAAAATCACAGA TACAAAAAAGCCACTC ATT GAGTGGCTTGTTTGTT TTTTATGGTGCCGGC TERM 1656 1385847 - 1385817 - f 100 -15.6 -3.10531 | opp_overlap 1385817, overlap 1385815 1385824 CTAAAATCACAGATA CAAAAAAGCCACTC ATT GAGTGGCTTGTTTG TTTTTTATGGTGCCG TERM 1657 1385817 - 1385847 + F 100 -15.6 -5.31275 | opp_overlap 1385817 1385815 1385824 CTAAAATCACAGATA CAAAAAAGCCACTC ATT GAGTGGCTTGTTTG TTTTTTATGGTGCCG TERM 1658 1385840 - 1385824 - f 100 -12.3 -5.4492 | opp_overlap 1385817, overlap 1385817 1385815 CACAGATACAAAAAA GCCACTC ATT GAGTGGC TTGTTTGTTTTTTAT TERM 1659 1386460 - 1386476 + F 100 -12.3 -6.07374 | opp_overlap 1386460 CCCAGAAACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTTAT TERM 1660 1386476 - 1386460 - f 100 -12.3 -5.72622 | opp_overlap 1386460 CCCAGAAACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTTAT Shewana3_1178 1387037 - 1387588 + | cytochrome B561 TERM 1661 1387614 - 1387602 - g 82 -4.1 -5.3671 | AATATAATGAAAAAA CAACT ATT AGCTG CTTTGATTGGTGGGT Shewana3_1179 1387593 - 1388168 + | hypothetical protein TERM 1662 1388201 - 1388230 + T 100 -10.1 -4.42386 | opp_overlap 1388202 1388209, overlap 1388202 1388209 TGCATTTATCAGCGA ATAAAAAAGCGCC TTTG GGCGCTTTTTTGC TTTTATGGATAGGCG TERM 1663 1388229 - 1388202 - T 84 -11.4 -3.10164 | opp_overlap 1388201 1388202 1388209, overlap 1388209 GCATTTATCAGCGAA TAAAAAAGCGCC TTTG GGCGCTTTTTTG CTTTTATGGATAGGC TERM 1664 1388202 - 1388229 + T 100 -13.6 -3.2511 | opp_overlap 1388202 1388209, overlap 1388201 1388209 GCATTTATCAGCGAA TAAAAAAGCGCC TTTG GGCGCTTTTTTG CTTTTATGGATAGGC TERM 1665 1388222 - 1388209 - T 100 -9.5 -5.4833 | opp_overlap 1388202 1388201 1388209, overlap 1388202 TCAGCGAATAAAAAA GCGCC TTTG GGCGC TTTTTTGCTTTTATG TERM 1666 1388209 - 1388222 + T 100 -9.5 -5.50313 | opp_overlap 1388209 1388202, overlap 1388202 1388201 TCAGCGAATAAAAAA GCGCC TTTG GGCGC TTTTTTGCTTTTATG Shewana3_1180 1388531 - 1388253 - | hypothetical protein Shewana3_1181 1389659 - 1388541 - | A/G-specific DNA-adenine glycosylase TERM 1667 1388649 - 1388661 + g 70 -4.8 -4.68384 | TTGATTGATGTTATA CCAG AGAGA CTGG TTTTGTTCCATGACT TERM 1668 1389135 - 1389167 + g 72 -8.6 -3.9461 | gap 1 TTTTTGAATATCCTG CTCTGGC-GTTAACT GCTC GGTTAATTGCCAGAG TTGTTCTTCCACAGG TERM 1669 1390297 - 1390282 - g 72 -3.9 -4.82901 | overlap 1390283 TCCGTGGCATAAAAA GCGCC ACCACA AGCGC CGTATCGTGCAGGCG trmB 1389839 - 1390555 + | tRNA (guanine-N(7))-methyltransferase TERM 1670 1390534 - 1390559 + F 91 -7.7 -4.90918 | gap 1 TGGCGTGTGGGATCT GATGTTTGAGCG TAT CGCTTAA-CATC TTTTATTGATTTTAT Shewana3_1183 1390601 - 1390927 + | hypothetical protein TERM 1671 1391479 - 1391489 + G 74 -6.8 -4.38092 | opp_overlap 1391479, overlap 1391475 GGCGATGTCGATACA GTGC TGC GCAC TTATTTTCATTATTG Shewana3_1184 1390927 - 1391841 + | glutaminase Shewana3_1185 1392020 - 1392841 + | hypothetical protein TERM 1672 1392827 - 1392817 - f 71 -6.8 -4.18018 | TGTGTTGACGCAAAA CACG CAC CGTG AATTACGTGAATAAT TERM 1673 1392932 - 1392957 + F 100 -8.3 -5.20534 | gap 1, opp_overlap 1392932 GATATAAATGAAAAA GCCCCAGTACGT TAA GTGT-CTGGGGC TTTTTCTTGATTCAT TERM 1674 1392957 - 1392932 - f 86 -6.9 -5.07011 | gap 1, opp_overlap 1392932 GATATAAATGAAAAA GCCCCAGTAC GTTAAGT GT-CTGGGGC TTTTTCTTGATTCAT Shewana3_1186 1393260 - 1394201 + | LysR family transcriptional regulator TERM 1675 1394548 - 1394574 + T 100 -11.7 -5.67967 | ATCCTAGTTTTTGGT TTACCTCAGCT CATTA GGCTGAGGTAA TTTTTTTCTGATGGT TERM 1676 1394755 - 1394716 - T 100 -18.2 -3.86346 | opp_overlap 1394721 1394728, overlap 1394717 1394728 CTAGCCGGTGATAAA TCCAATAAAAAAGCCACT TAAT AGTGGCTTTTTTATTGGC TGCGATTTAACGATT TERM 1677 1394754 - 1394717 - T 100 -21.7 -2.91593 | opp_overlap 1394721 1394728, overlap 1394716 1394728 TAGCCGGTGATAAAT CCAATAAAAAAGCCACT TAAT AGTGGCTTTTTTATTGG CTGCGATTTAACGAT TERM 1678 1394721 - 1394750 + T 100 -15.3 -3.08966 | opp_overlap 1394717 1394716 1394728, overlap 1394728 CGGTGATAAATCCAA TAAAAAAGCCACT TAAT AGTGGCTTTTTTA TTGGCTGCGATTTAA TERM 1679 1394728 - 1394743 + T 100 -9 -5.4833 | opp_overlap 1394717 1394716 1394728, overlap 1394721 AAATCCAATAAAAAA GCCACT TAAT AGTGGC TTTTTTATTGGCTGC TERM 1680 1394743 - 1394728 - T 100 -9 -5.52096 | opp_overlap 1394728 1394721, overlap 1394717 1394716 AAATCCAATAAAAAA GCCACT TAAT AGTGGC TTTTTTATTGGCTGC TERM 1681 1394786 - 1394815 + T 73 -8.5 -3.60971 | opp_overlap 1394794, overlap 1394787 TTATTGGCAAGGCGT TCAAGGGAGGCTA GCGT TAGCCTCCCACGG TTTCAAGCTTAGGCT TERM 1682 1394787 - 1394814 + T 72 -9.8 -2.76261 | opp_overlap 1394794, overlap 1394786 TATTGGCAAGGCGTT CAAGGGAGGCTA GCGT TAGCCTCCCACG GTTTCAAGCTTAGGC Shewana3_1187 1396671 - 1394824 - | hypothetical protein TERM 1683 1395843 - 1395857 + g 71 -6.4 -4.34402 | CATCGCGGGTATCGG CCTTGG CTT CTAAGG TTTTGATATAGGCGA TERM 1684 1396774 - 1396764 - R 70 -5.4 -4.42386 | overlap 1396766 1396767 GTGTTAGCCATAAAA GATG TCT CATC GAGAAACCTAGGCTA Shewana3_1188 1397981 - 1396824 - | putative oxygen-independent coproporphyrinogen III oxidase TERM 1685 1397412 - 1397392 - G 83 -9.7 -4.23674 | TGGTACCAAGACAAA TGCGGCG GATTGAG CGCCGCA GCGGTATCTATATCC Shewana3_1189 1398598 - 1397981 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 1686 1398753 - 1398716 - R 100 -17.1 -5.06585 | opp_overlap 1398716 TAAAGGACAGAAAAA GGCAGGACGAAACTTAG TATC CTTAGTATCGTCCTGCC TTGTGAGGTTGAGAT TERM 1687 1398716 - 1398753 + r 100 -17.1 -3.36671 | opp_overlap 1398716 TAAAGGACAGAAAAA GGCAGGACGAAACTTAG TATC CTTAGTATCGTCCTGCC TTGTGAGGTTGAGAT Shewana3_1190 1399202 - 1398768 - | hypothetical protein TERM 1688 1399097 - 1399084 - G 70 -2.3 -5.02074 | CTAGGCGTTAAAAAA GTGCT GCCC AGCGC CATGTAATGAATGTC Shewana3_1191 1399561 - 1399271 - | hypothetical protein TERM 1689 1399548 - 1399521 - G 91 -11.4 -4.2074 | overlap 1399525 1399532 GGTTGAATATACAAA TTAAGCAGCAAG TCAC CTTGCTGCATAA TGACTGCGCTCATTA TERM 1690 1399544 - 1399525 - G 85 -12.2 -3.69088 | overlap 1399521 1399532 GAATATACAAATTAA GCAGCAAG TCAC CTTGCTGC ATAATGACTGCGCTC Shewana3_1192 1400109 - 1399561 - | protein of unknown function YGGT TERM 1691 1400031 - 1400018 - G 76 -4.5 -4.92783 | AAGGGATTATAAAAA TCGGC ACGG GCCAA GGGGAGCCAGATCCG Shewana3_1193 1401003 - 1400185 - | pyrroline-5-carboxylate reductase TERM 1692 1401118 - 1401152 + r 70 -5.8 -4.25104 | TTCTCTAACAGTATT TGGGCTTTAGCC ACTAAAAACAA GGCTAAAGCCGA TTTTGCTGGCGCACC Shewana3_1194 1401941 - 1401225 - | hypothetical protein TERM 1693 1401592 - 1401568 - G 79 -12.9 -3.05963 | opp_overlap 1401572 1401578, overlap 1401570 1401572 ATGTTGATTTGAATA CACACCTTGAG CGG CGCAAGGTGTG CTGGGCGCTGCTCAT Shewana3_1195 1401977 - 1403014 + | pilus retraction ATPase PilT Shewana3_1196 1403024 - 1404136 + | twitching motility protein TERM 1694 1404159 - 1404176 + F 100 -11.3 -5.66684 | opp_overlap 1404159 CGCGGTGATGTGAAA GCAGCTC CCTT GAGCTGC TTTTTTTATCGCTTA TERM 1695 1404176 - 1404159 - f 90 -11.3 -3.59979 | opp_overlap 1404159 CGCGGTGATGTGAAA GCAGCTC CCTT GAGCTGC TTTTTTTATCGCTTA Shewana3_1197 1404235 - 1404846 + | glutathione peroxidase Shewana3_1198 1404916 - 1405899 + | ferrochelatase TERM 1696 1405920 - 1405947 + T 100 -10 -4.63542 | opp_overlap 1405925, overlap 1405925 ATAACCGTAGAAATA AAAAAGGATAGC TCAG GCTATCCTTTTG TTTTTACGACTTATC TERM 1697 1405925 - 1405942 + T 100 -9.9 -5.26119 | opp_overlap 1405925, overlap 1405920 CGTAGAAATAAAAAA GGATAGC TCAG GCTATCC TTTTGTTTTTACGAC TERM 1698 1405942 - 1405925 - T 100 -9.9 -5.72622 | opp_overlap 1405925 1405920 CGTAGAAATAAAAAA GGATAGC TCAG GCTATCC TTTTGTTTTTACGAC Shewana3_1199 1406386 - 1405961 - | Holliday junction resolvase-like protein Shewana3_1200 1406978 - 1406415 - | hypothetical protein Shewana3_1201 1407376 - 1407047 - | translation initiation factor Sui1 TERM 1699 1407474 - 1407448 - R 100 -10.8 -5.47218 | overlap 1407470 GGGGAGGTAAAAAAA GGCCACTGACAG AGA CTGAAAGTGGCC GAAGGTCAATGCTAG Shewana3_1202 1407840 - 1407526 - | hypothetical protein TERM 1700 1407857 - 1407891 + H 100 -16.8 -3.16564 | overlap 1407846 1407867 TTAGTTATCCCTTAA TCGCTTTAAGTGATAA TCA TTATCATTTAAAGCGA TTGCTGAAGTCAAGC TERM 1701 1408514 - 1408496 - g 74 -4.6 -4.83615 | TATCCGTGATAAAAA TACCCCTT CGG AAAGAGTA CAGCTGATCAACGAA Shewana3_1203 1408020 - 1408580 + | hypothetical protein TERM 1702 1408586 - 1408632 + F 100 -17.7 -3.6715 | gap 1, opp_overlap 1408601, overlap 1408601 1408625 AAACAAATAATTTAC TTTTAGTC-TAAAAAAGCGGCC CTTT GGCCGCTTTTTTGTGGCTAAAA TTTAGGCTTGAGTGG TERM 1703 1408616 - 1408601 - f 100 -11.8 -5.0538 | opp_overlap 1408601 1408586 TTTTAGTCTAAAAAA GCGGCC CTTT GGCCGC TTTTTTGTGGCTAAA TERM 1704 1408601 - 1408616 + F 100 -11.8 -5.28176 | opp_overlap 1408601, overlap 1408586 TTTTAGTCTAAAAAA GCGGCC CTTT GGCCGC TTTTTTGTGGCTAAA Shewana3_1204 1408934 - 1409575 + | hypothetical protein TERM 1705 1409600 - 1409582 - T 100 -13.2 -5.14163 | opp_overlap 1409582 ACGCACTAATAAAAA TGGGGCAT TTA ATGCCCCA TTTTTTATGCTTATT TERM 1706 1409582 - 1409600 + T 100 -13.2 -5.4111 | opp_overlap 1409582 ACGCACTAATAAAAA TGGGGCAT TTA ATGCCCCA TTTTTTATGCTTATT Shewana3_1205 1410204 - 1409611 - | thiol peroxidase (atypical 2-Cys peroxiredoxin) TERM 1707 1410280 - 1410297 + r 100 -12.7 -4.39287 | opp_overlap 1410280 TATCACCATAAAAAA GGCCGGT ATTC ACCGGCC TTTTAATATGCTTGC TERM 1708 1410297 - 1410280 - R 100 -12.7 -5.32882 | opp_overlap 1410280 TATCACCATAAAAAA GGCCGGT ATTC ACCGGCC TTTTAATATGCTTGC Shewana3_1206 1411143 - 1410316 - | MscS mechanosensitive ion channel TERM 1709 1410382 - 1410394 + g 78 -4.1 -5.10877 | AATTTCAATGTTCGC TGCAT CGA GTGCA TTTTTGATTTGTTCT Shewana3_1207 1411750 - 1411175 - | OmpA/MotB domain-containing protein TERM 1710 1411450 - 1411431 - G 73 -2.8 -5.00616 | TTCGCGTCTAAAAAA GCTTTCAC TAAG GCTAAAGC TTTCCATTGCGATAA TERM 1711 1412499 - 1412520 + G 70 -8.7 -3.58269 | GCCCCAGACTTATCT TGCCAATGC GCAG GCACTGGCA TTTCAGCGTGGCTTA Shewana3_1208 1412053 - 1413066 + | L-threonine aldolase TERM 1712 1413077 - 1413096 + F 100 -12.2 -5.30686 | CATAATCGGCGTTGA GCCCAAGT GAAA ACTTGGGC TTTTTTATACATCTT TERM 1713 1414517 - 1414540 + G 83 -5.2 -5.14563 | opp_overlap 1414520, overlap 1414519 GCAATGCAAAGAACT CAAGACTCAG CTGC CTGAGTCGGG TTTTTTGATGGCGCC TERM 1714 1414537 - 1414520 - g 70 -9.9 -3.33911 | opp_overlap 1414519 1414517 ATGCAAAGAACTCAA GACTCAG CTGC CTGAGTC GGGTTTTTTGATGGC Shewana3_1209 1413231 - 1414697 + | putative signal transduction protein Shewana3_1210 1415238 - 1414699 - | hypothetical protein Shewana3_1211 1416125 - 1415301 - | hypothetical protein TERM 1715 1415603 - 1415616 + g 70 -8.1 -3.66018 | opp_overlap 1415602 ATTGATGGGCAAACT CGTGG ATCA CCACG TTGTTGCCATCGTGG Shewana3_1212 1417965 - 1416229 - | diguanylate cyclase TERM 1716 1417768 - 1417780 + g 73 -3.4 -5.055 | AGTGGTGATGATTTG CAGT CTTTC ACTG TTTTTTGCCAGTTGC Shewana3_1213 1419455 - 1417962 - | extracellular solute-binding protein TERM 1717 1418197 - 1418212 + g 70 -4.6 -4.62872 | overlap 1418199 TGGCTCGCCTCGAAT GCGCCA GCAA TGGCTC TTTTTGAGGCTTGGT TERM 1718 1419567 - 1419539 - R 100 -6.7 -5.81412 | TTGAGGCAAAAAAAA CCGGTGACCTA ATCAATG TGGATCACCGG AAAAGGGTGGGAGAT Shewana3_1214 1420074 - 1419592 - | CopG family transcriptional regulator TERM 1719 1420041 - 1420003 - GR 83 -8.9 -4.15044 | gap 2, opp_overlap 1420020, overlap 1420004 1420007 CGCGGCGTCAATAAA CTCATCGAGGGAGAGGGGC TGT GCGCCTC-CCCTAGATG-G CATAGCGTTTTTCTT TERM 1720 1420038 - 1420007 - GR 70 -9.4 -2.75825 | gap 1, opp_overlap 1420020, overlap 1420003 1420004 GCGTCAATAAACTCA TCGAGGGAGAGGGGC TGT GCGCCTC-CCCTAGA TGGCATAGCGTTTTT Shewana3_1215 1420816 - 1420034 - | hypothetical protein Shewana3_1216 1421348 - 1421806 + | acetyltransferase Shewana3_1217 1422018 - 1422227 + | hypothetical protein Shewana3_1218 1422355 - 1422657 + | NrfJ-related protein TERM 1721 1422694 - 1422726 + F 100 -13.5 -3.53012 | opp_overlap 1422699, overlap 1422699 TGTTGCGATGAGTTC CTAAACCGCCTCG CCTTGTT CGAGGCGGTTTTG TTTACAGCGGCAAAC TERM 1722 1422699 - 1422721 + F 100 -12 -4.86731 | opp_overlap 1422699, overlap 1422694 CGATGAGTTCCTAAA CCGCCTCG CCTTGTT CGAGGCGG TTTTGTTTACAGCGG TERM 1723 1422721 - 1422699 - f 91 -12 -3.56092 | opp_overlap 1422699 1422694 CGATGAGTTCCTAAA CCGCCTCG CCTTGTT CGAGGCGG TTTTGTTTACAGCGG Shewana3_1219 1422825 - 1423346 + | acetyltransferase Shewana3_1220 1423410 - 1423940 + | acetyltransferase TERM 1724 1424010 - 1423991 - T 95 -4.8 -5.85737 | opp_overlap 1423991 1423973 AGACCAATAAAAAAA CCGCCTCG TTTC CTCGGCGG TTTTTTTATTGGTCA TERM 1725 1423991 - 1424010 + T 95 -4.8 -5.84381 | opp_overlap 1423991, overlap 1423973 AGACCAATAAAAAAA CCGCCTCG TTTC CTCGGCGG TTTTTTTATTGGTCA Shewana3_1221 1424730 - 1424035 - | pirin domain-containing protein Shewana3_1222 1425184 - 1424741 - | DoxX family protein Shewana3_1223 1425280 - 1426242 + | LysR family transcriptional regulator TERM 1726 1426319 - 1426278 - T 100 -21.3 -3.06183 | opp_overlap 1426282, overlap 1426282 TTGATGTGGATTGAA TTAATCACAGTACTTAACC CATT GGCTAAGTACTGTGATTAA TTAAGAGGACAGAGT TERM 1727 1426315 - 1426282 - T 100 -17.7 -3.37344 | opp_overlap 1426282, overlap 1426278 TGTGGATTGAATTAA TCACAGTACTTAACC CATT GGCTAAGTACTGTGA TTAATTAAGAGGACA TERM 1728 1426282 - 1426315 + T 100 -15.5 -3.33696 | opp_overlap 1426278 1426282 TGTGGATTGAATTAA TCACAGTACTTAACC CATT GGCTAAGTACTGTGA TTAATTAAGAGGACA Shewana3_1224 1428115 - 1426364 - | metallophosphoesterase TERM 1729 1428169 - 1428183 + r 100 -11.4 -4.06502 | opp_overlap 1428169 CCCAAAAACAAGAAA GGGAGC CAA GCTCCC TTTACTTTAACAATG TERM 1730 1428183 - 1428169 - R 100 -11.4 -4.76802 | opp_overlap 1428169 CCCAAAAACAAGAAA GGGAGC CAA GCTCCC TTTACTTTAACAATG Shewana3_1225 1429304 - 1428213 - | hypothetical protein TERM 1731 1429416 - 1429426 + H 76 -6.8 -4.43012 | TGTATAATTCGCCGC CCTG TTG CAGG TTTTGGTGTTGAGGT Shewana3_1226 1429449 - 1430570 + | hypothetical protein TERM 1732 1431137 - 1431156 + G 70 -8.6 -3.73775 | gap 1, opp_overlap 1431136 1431133, overlap 1431140 ATGGCGTTAAAGTAT GAC-CCGAG ACG CTCGGTGTC TTTACTGGAGCTGGC Shewana3_1227 1430603 - 1431391 + | type IV pilus biogenesis/stability protein PilW Shewana3_1228 1431388 - 1432515 + | hypothetical protein ispG 1432558 - 1433673 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 1733 1433733 - 1433755 + F 72 -6.2 -4.38313 | opp_overlap 1433745, overlap 1433734 CTCAAGCCTTGAGCT AGACCCCG AAACCGA CGGGGTCA TTTTACGTTTAGTGT TERM 1734 1433734 - 1433754 + F 74 -9.7 -3.21904 | opp_overlap 1433745, overlap 1433733 TCAAGCCTTGAGCTA GACCCCG AAACCGA CGGGGTC ATTTTACGTTTAGTG Shewana3_1230 1433833 - 1435110 + | histidyl-tRNA synthetase TERM 1735 1435399 - 1435362 - g 71 -5 -4.57569 | opp_overlap 1435380, overlap 1435374 TGAGTTTTCCAAAAA TCACGA-CCAAAAGGGCT ATCA AGCCCTGCTGGATC-TGA TCGTTGCGAAAACCG TERM 1736 1435387 - 1435374 - g 79 -8.1 -4.33708 | opp_overlap 1435380, overlap 1435362 AAATCACGACCAAAA GGGCT ATCA AGCCC TGCTGGATCTGATCG TERM 1737 1435672 - 1435658 - g 87 -10 -4.39571 | overlap 1435651 CGGATAAAGCGAAAA CCGCTT ACC AAGCGG CAATGGACAATGGCG Shewana3_1231 1435123 - 1435743 + | hypothetical protein Shewana3_1232 1435755 - 1436942 + | outer membrane protein assembly complex subunit YfgL TERM 1738 1436965 - 1436989 + F 100 -13.6 -5.06816 | TGTTATCCTTGTAGA GCCCCTGGAA GTGTG TTCCGGGGGC TTTTTATTGAAAAGT TERM 1739 1436989 - 1437003 + F 73 -3.6 -5.00616 | AGTGTGTTCCGGGGG CTTTTT ATT GAAAAG TTTTTTAGAGGCAAA TERM 1740 1437367 - 1437356 - g 81 -5.8 -5.02074 | GTAGCCGTCAAAAAA CCAC TTTC GTGG TCGCTAACAAGATTG engA 1437022 - 1438488 + | GTP-binding protein EngA TERM 1741 1438545 - 1438516 - T 100 -15.3 -3.09492 | opp_overlap 1438523, overlap 1438523 GGCTTAAGCGGAACA TAAAAAAGGAACC CTAG GGTTCCTTTTTTA TTGGCGTATTTTAGG TERM 1742 1438523 - 1438538 + T 100 -9 -5.46657 | opp_overlap 1438516 1438523 GCGGAACATAAAAAA GGAACC CTAG GGTTCC TTTTTTATTGGCGTA TERM 1743 1438538 - 1438523 - T 100 -9 -5.47159 | opp_overlap 1438523, overlap 1438516 GCGGAACATAAAAAA GGAACC CTAG GGTTCC TTTTTTATTGGCGTA xseA 1439984 - 1438638 - | exodeoxyribonuclease VII large subunit Shewana3_1235 1440107 - 1441573 + | inositol-5-monophosphate dehydrogenase TERM 1744 1441578 - 1441618 + F 100 -14.8 -4.05033 | opp_overlap 1441576, overlap 1441587 CAGGTGCGTAAACGT TTGTGATGACGGGGCGGC GATAA GCCGCCCCGTTATTAAGA TTTGTATGCCCTCAA TERM 1745 1441587 - 1441609 + F 100 -17.7 -3.71991 | opp_overlap 1441576, overlap 1441578 AAACGTTTGTGATGA CGGGGCGGC GATAA GCCGCCCCG TTATTAAGATTTGTA guaA 1441691 - 1443268 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1746 1443309 - 1443332 + F 90 -7.5 -5.08601 | opp_overlap 1443309 AATGATTTAACTCAA TGCCAGTCA CTTAAT TGATTGGCA TTTTTATTGGGATGA TERM 1747 1443883 - 1443873 - g 73 -5.4 -4.74103 | overlap 1443881 TTTTCAAGCCAAAAA GCAT CCA ATGC CGAGGGCTGCGATAA Shewana3_1237 1443631 - 1447431 + | hypothetical protein TERM 1748 1447534 - 1447548 + F 100 -8.5 -5.57396 | opp_overlap 1447534 TCCTTACCCAGTGAA GGCGC CAAGT GCGCC TTTTTTATTGGTTAT Shewana3_1238 1447605 - 1448273 + | tRNA-adenosine deaminase Shewana3_1239 1450149 - 1448713 - | lytic transglycosylase, catalytic TERM 1749 1449125 - 1449113 - G 82 -10.5 -3.91984 | opp_overlap 1449110 ATATCCCGTAAATAA GCGGC GCC GCCGC GAATACTTTCTTCCG TERM 1750 1449915 - 1449929 + g 73 -6.4 -4.56775 | AGAGTTCGGCACGGT TGGTGT AGG GCACCA TTTTTAAGGGCACAT TERM 1751 1450289 - 1450270 - H 80 -2.9 -5.49729 | AATTACGTAAAAAAA TCGTATC GCATGG AATACGA AGGAGGGGAAAAGGG TERM 1752 1450812 - 1450802 - g 71 -6.8 -4.2704 | opp_overlap 1450802 TCGAGCAGCAACAAA CCCT CAA AGGG TTATTGCACGACCGT TERM 1753 1451471 - 1451447 - g 76 -5.1 -4.75174 | gap 1 TATCGAATTTAAAAA TCCCA-GGTT TTGTAC AACCATGGGA AGGCAACTACGGTAA TERM 1754 1451715 - 1451704 - g 72 -3.6 -4.88736 | overlap 1451711 1451712 GAGCACGTACAAAAA GGCG AAAT CACC GTCGGTGCTAAGCTT Shewana3_1240 1450429 - 1454310 + | phosphoribosylformylglycinamidine synthase TERM 1755 1454352 - 1454371 + F 100 -12.2 -5.4251 | opp_overlap 1454352 AAGTGAGTAAAAAAA GGAGCGAA ATTT TTCGCTCC TTTTTTATATATAAA TERM 1756 1454371 - 1454352 - f 100 -12.2 -5.54894 | opp_overlap 1454352 AAGTGAGTAAAAAAA GGAGCGAA ATTT TTCGCTCC TTTTTTATATATAAA TERM 1757 1454582 - 1454606 + F 84 -11.3 -3.09831 | opp_overlap 1454582, overlap 1454579 ACATAAAAGCAAAAA GCCCCCAACTC ATC GAGAAGGGGGC TCGTTTTGCGCTAAC TERM 1758 1454606 - 1454582 - f 100 -11.3 -5.15526 | opp_overlap 1454582 1454579 ACATAAAAGCAAAAA GCCCCCAACTC ATC GAGAAGGGGGC TCGTTTTGCGCTAAC TERM 1759 1455087 - 1455102 + F 74 -4 -5.01042 | opp_overlap 1455098, overlap 1455092 1455098 TAGATTTTTGCTCAA GTTGGT AAAA ACTAAC TTTTTAGTTTAGCTT Shewana3_1241 1455552 - 1457108 + | cytochrome bd ubiquinol oxidase, subunit I Shewana3_1242 1457124 - 1458263 + | cytochrome d ubiquinol oxidase, subunit II Shewana3_1243 1458282 - 1458398 + | cyd operon protein YbgT TERM 1760 1458446 - 1458431 - f 100 -11.8 -4.11484 | opp_overlap 1458431 CTGAACCCTTTAAAA CCCCGC AACT GCGGGG TTTTTTATTTCACCA TERM 1761 1458431 - 1458446 + F 100 -11.8 -5.63517 | opp_overlap 1458431 CTGAACCCTTTAAAA CCCCGC AACT GCGGGG TTTTTTATTTCACCA Shewana3_1244 1458630 - 1459829 + | phage integrase family protein TERM 1762 1460138 - 1460128 - g 84 -4.6 -5.252 | CACCTCTACAAAAAA CGAG TCG CCCG CCCAGGTGCAGGTAA Shewana3_1245 1459990 - 1460373 + | hypothetical protein Shewana3_1246 1460354 - 1460659 + | transcriptional regulator-like protein Shewana3_1247 1460685 - 1461503 + | hypothetical protein Shewana3_1248 1461517 - 1462800 + | hypothetical protein Shewana3_1249 1463565 - 1462966 - | ATPase-like protein Shewana3_1250 1463938 - 1465479 + | integrase catalytic subunit Shewana3_1251 1465494 - 1466249 + | IstB ATP binding domain-containing protein Shewana3_1252 1466554 - 1467063 + | DNA repair protein RadC TERM 1763 1467068 - 1467083 + T 100 -11.8 -5.63103 | GCCTGATCTGACCCA GGGGGC TTCG GCCCCC TTTTTTTGCTTCGCC Shewana3_1253 1467916 - 1467107 - | hypothetical protein TERM 1764 1467261 - 1467292 + g 74 -10 -3.55071 | CGGCCGTAATTATCG GCGCAGTTCTCCTC AATA GCGGCGAACAGCGC TTTGAAAAAATCTGC Shewana3_1254 1471351 - 1468067 - | DNA helicase related protein TERM 1765 1468512 - 1468536 + g 71 -7.2 -3.9941 | gap 1, opp_overlap 1468514, overlap 1468515 CCGCTGGCTTGAATC CATCCTGTCAG GAAG CTGGCAGG-TG TTTCCTTGTCGGGGC TERM 1766 1468515 - 1468534 + g 74 -10 -3.5891 | opp_overlap 1468514, overlap 1468512 CTGGCTTGAATCCAT CCTGTCAG GAAG CTGGCAGG TGTTTCCTTGTCGGG TERM 1767 1469331 - 1469354 + g 79 -8.1 -4.41548 | CGCAAGCGTTGAAGC GCACGTCGC GTATCG GCGGTGTGC TTTTCTAAGCTCTCC Shewana3_1255 1473172 - 1471427 - | hypothetical protein TERM 1768 1473007 - 1473017 + g 79 -8.2 -4.28656 | opp_overlap 1473007, overlap 1473000 CTGGCTCGACGCAAA CCGG ATT CCGG TTTTCGCTATTAGGT Shewana3_1256 1474130 - 1473237 - | hypothetical protein Shewana3_1257 1475105 - 1474143 - | patatin Shewana3_1258 1475392 - 1475102 - | XRE family transcriptional regulator TERM 1769 1475513 - 1475500 - H 74 -8.1 -4.03234 | GTGCTTTTACAGAAA TCCGC TTTT GCGGA TCTCGCCAAATTCGA Shewana3_1259 1475678 - 1476007 + | putative lipoprotein TERM 1770 1476549 - 1476512 - g 100 -16.3 -4.07687 | gap 1, opp_overlap 1476513, overlap 1476513 ACGCCTGCTGGAAAA CCCGGCGCTGGATGCGCG CGA CGCGCATCCAGC-CTGGT TTCCCGATCACGATG TERM 1771 1476548 - 1476513 - g 100 -19.8 -3.04398 | gap 1, opp_overlap 1476513, overlap 1476512 CGCCTGCTGGAAAAC CCGGCGCTGGATGCGCG CGA CGCGCATCCAGC-CTGG TTTCCCGATCACGAT TERM 1772 1476513 - 1476548 + G 100 -22 -3.57263 | gap 1, opp_overlap 1476513 1476512 CGCCTGCTGGAAAAC CCGGCGCTGGATGCGCG CGA CGCGCATCCAGC-CTGG TTTCCCGATCACGAT TERM 1773 1477051 - 1477067 + G 74 -11.5 -3.16921 | GTAATGCGCTGATGC GCGGCGG CTA TCGCCGC TTGGTGCAACTTCCT Shewana3_1261 1476330 - 1477127 + | hypothetical protein TERM 1774 1477159 - 1477185 + F 100 -12.2 -4.08767 | TCTTGAGACTGCCTC CATCCGGCCGCG CTG TGTGGCCGGACG TTTTCAACCGATGGA TERM 1775 1477348 - 1477380 + G 77 -12.8 -2.86177 | gap 1, opp_overlap 1477333, overlap 1477369 1477371 GCAGCGCGTGATCGG CGGCGGGCCGAAGTT CCGC AAGTTCGGCC-GCCG TGTCATGTACGCTGT TERM 1776 1477371 - 1477401 + G 74 -11.1 -3.1552 | overlap 1477348 1477369 CGAAGTTCCGCAAGT TCGGCCGCCGTGT CATGT ACGCTGTGGCCGA TCTTGATGCGTGGGC Shewana3_1262 1477211 - 1477495 + | hypothetical protein TERM 1777 1477961 - 1477980 + G 76 -7.8 -4.2828 | gap 1, opp_overlap 1477931 1477961 CCATCCGCGAGACCA CCGG-GCGG CGC CTGCACCGG TTTTCCTGGATCAAC TERM 1778 1478046 - 1478008 - g 72 -8.1 -3.95036 | gap 1, opp_overlap 1478008 1478011 AACGAGTGGAAAGAA CTGGCCGATGCC-AACGG CAAG CCGCTAGGCATCGAGCTG ATCTTGCCGGACTGG Shewana3_1263 1477522 - 1478379 + | putative replication initiator and transcription repressor protein Shewana3_1264 1478666 - 1479304 + | cobyrinic acid a,c-diamide synthase TERM 1779 1479459 - 1479443 - g 83 -15.1 -2.62616 | TGACCCTCGATATCA CGCCCGC CAT GCGGGCG CGCATCAAGGTCTCA Shewana3_1265 1479301 - 1479552 + | hypothetical protein Shewana3_1266 1479549 - 1480082 + | hypothetical protein Shewana3_1267 1480079 - 1480666 + | TraF peptidase Shewana3_1268 1481079 - 1483052 + | hypothetical protein Shewana3_1269 1483843 - 1483049 - | XRE family transcriptional regulator TERM 1780 1484539 - 1484579 + G 73 -11.7 -2.67694 | opp_overlap 1484562, overlap 1484534 GCAGCATCTTGCATT CCCGAGTCCAGAGCCGAGC AAA GCCCGGCACTGGATTGGAG TGGTGTGATACTGGT Shewana3_1270 1483912 - 1485396 + | major facilitator transporter Shewana3_1271 1485411 - 1485686 + | LysR family transcriptional regulator TERM 1781 1485803 - 1485813 + G 70 -2.4 -4.94487 | TCCAGTCTGGGATGC GCGC AAG GGGC TTTTATATTTTGTCG Shewana3_1272 1485693 - 1485914 + | hypothetical protein Shewana3_1273 1485995 - 1486189 + | Smp-30/Cgr1 family protein Shewana3_1274 1486226 - 1486606 + | Smp-30/Cgr1 family protein Shewana3_1275 1486964 - 1487641 + | IclR family transcriptional regulator TERM 1782 1487707 - 1487717 + F 75 -3.2 -5.24796 | AGAAGACTCTTTTAA CTTC CAA GGAG TTTTTGTTATGTCGC Shewana3_1276 1487726 - 1488133 + | hypothetical protein TERM 1783 1488414 - 1488467 + G 87 -7.9 -5.03314 | overlap 1488416 ATCGGCACTATCGGC CAGCTATGAGCTGCTGCTGGCCGGA CGCA TCCTGACTGCGGTGGCACATGGCAG TTTTTTCGCCATCGG TERM 1784 1489240 - 1489270 + G 73 -10.4 -3.25896 | overlap 1489232 1489239 1489242 ACGCCGTGGGCCGGC GTGGCACTTGTGCT ACT AGCGCAATTGCCTC TGTTATGGCTCGTGC TERM 1785 1489242 - 1489268 + G 76 -11.6 -3.19212 | overlap 1489232 1489240 1489239 GCCGTGGGCCGGCGT GGCACTTGTGCT ACT AGCGCAATTGCC TCTGTTATGGCTCGT Shewana3_1277 1488130 - 1489353 + | major facilitator transporter Shewana3_1278 1489643 - 1490584 + | LysR family transcriptional regulator Shewana3_1279 1490581 - 1490844 + | putative lipoprotein TERM 1786 1490886 - 1490912 + F 85 -7.3 -4.79667 | gap 1, opp_overlap 1490886 CTTTTTTTACTAACA CGCCGCAATGCG CTCA TGC-TTGCGGTG TTTTTCCTGCCTTTT Shewana3_1280 1491078 - 1493075 + | TRAG family protein Shewana3_1281 1493072 - 1493536 + | CopG/DNA-binding domain-containing protein TERM 1787 1494322 - 1494332 + G 70 -8.2 -3.73775 | ATCCACGCCGGTTCC GCGC TAG GCGC TTTGCTGCGCCTCGA TERM 1788 1494494 - 1494455 - g 77 -10.6 -3.57263 | overlap 1494458 AGCGCCACGTCGAAA CCATCGCCCGTGTCGTCG GCTT CGACGGCACCGGCTATCG CCTGGCGGACGCGCT TERM 1789 1494491 - 1494458 - g 70 -10.9 -2.91695 | overlap 1494455 GCCACGTCGAAACCA TCGCCCGTGTCGTCG GCTT CGACGGCACCGGCTA TCGCCTGGCGGACGC Shewana3_1282 1493533 - 1494603 + | type II secretion system protein E Shewana3_1283 1494600 - 1494986 + | conjugal transfer protein TrbC Shewana3_1284 1494983 - 1495252 + | putative conjugal transfer trbD transmembrane protein TERM 1790 1495308 - 1495283 - g 70 -10.3 -3.02461 | opp_overlap 1495285 GAACCTTGCCGAATA CCGCCAGCGGC CCGC GCTGCTGGCCG ACTGGCTTCCCTGGG TERM 1791 1495285 - 1495314 + G 93 -15.7 -3.05384 | gap 1, opp_overlap 1495283 ACCTTGCCGAATACC GCCAG-CGGCCCGC GCT GCTGGCCGACTGGC TTCCCTGGGCCGGGC TERM 1792 1496544 - 1496554 + G 79 -8.2 -4.30014 | overlap 1496547 GTCACCCGCACCGAT GGCG CGA CGCC TTTTCGCTTGGTCAC TERM 1793 1497131 - 1497081 - g 77 -11.9 -3.12351 | gap 2, opp_overlap 1497113, overlap 1497084 GGCTTCGAGATGGAA GAACTGAT-GCACAGCCCCGC-CGC CGT GCAAGCGGTGCTGCGCTACCTGTTC GCCCGCTTCGATGAG Shewana3_1285 1495263 - 1497713 + | AAA ATPase Shewana3_1286 1497710 - 1498453 + | putative conjugal transfer TrbJ signal peptide protein Shewana3_1287 1498466 - 1498783 + | putative lipoprotein TERM 1794 1499131 - 1499103 - g 75 -10.3 -3.38272 | CATCACGATGGAGAA TTTTCTTCAGCCG GGG CGGCTGGCGAAAA CCGGCATTGACGCAG TERM 1795 1499862 - 1499815 - g 86 -13.5 -3.53012 | opp_overlap 1499817 GGCGGCGGGGCCAAA GGCGCGGCG-GCTGGCCTTGGCA ATGT CGCCAAGACCAGCGCACAG-GCC GCCAGCCGCCGCGTC TERM 1796 1500128 - 1500071 - g 70 -11.1 -2.66316 | gap 1, overlap 1500068 GCCGCCAGCAGATCA CCCATGCCGCGACCACCACCGCC-CACA CGC TGCGCGGTGGCGACGGCGGCGGCTCAGG GCAAGGCCCGAGCCT Shewana3_1288 1498780 - 1500162 + | TrbL/VirB6 plasmid conjugal transfer protein Shewana3_1289 1500181 - 1500885 + | conjugal transfer protein Shewana3_1290 1500882 - 1501874 + | conjugal transfer protein TrbG/VirB9/CagX Shewana3_1291 1501877 - 1503157 + | conjugation TrbI family protein TERM 1797 1503190 - 1503171 - g 82 -10.6 -3.86981 | GAGCACAACCAAGAA GCTGCGGC TGGG GCCGCTGC CCAAGACCGAAAGCG TERM 1798 1503292 - 1503242 - g 71 -7.7 -4.11216 | gap 4, overlap 1503243 1503246 CGGCCAGTCTTAAAA CCGACCTCGACCGCTACGCC-GCGC TGCAC GCGCAGGCGTAT-GG-CGAGG-CAG TCGATGCGGCGACGC TERM 1799 1503386 - 1503361 - g 100 -12.5 -4.42386 | gap 1 CGGGGATTCAGAAAA GGAGGGGCAGGC AAG GCC-GCCCCGCC GAAGCCGAGTTGACG Shewana3_1292 1503154 - 1503399 + | hypothetical protein TERM 1800 1503421 - 1503470 + T 100 -19.3 -2.53876 | opp_overlap 1503436, overlap 1503430 1503431 1503436 GGACGCCTCTACCAT CCGCCCACGATGAAAGCGCAGCC CAAG GGCTGCGCTTTCGCTTTGAGCGG TGGCTTGCGATAGGC TERM 1801 1503430 - 1503461 + T 100 -15.2 -3.5594 | opp_overlap 1503436, overlap 1503421 1503431 1503436 TACCATCCGCCCACG ATGAAAGCGCAGCC CAAG GGCTGCGCTTTCGC TTTGAGCGGTGGCTT TERM 1802 1503431 - 1503460 + T 100 -18.7 -2.73243 | opp_overlap 1503436, overlap 1503430 1503421 1503436 ACCATCCGCCCACGA TGAAAGCGCAGCC CAAG GGCTGCGCTTTCG CTTTGAGCGGTGGCT TERM 1803 1503455 - 1503436 - T 100 -15 -3.78775 | opp_overlap 1503431 1503430 1503421 1503436 CCGCCCACGATGAAA GCGCAGCC CAAG GGCTGCGC TTTCGCTTTGAGCGG TERM 1804 1503436 - 1503455 + T 100 -15 -3.84451 | opp_overlap 1503436, overlap 1503431 1503430 1503421 CCGCCCACGATGAAA GCGCAGCC CAAG GGCTGCGC TTTCGCTTTGAGCGG TERM 1805 1504090 - 1504113 + T 79 -11 -3.14564 | opp_overlap 1504092, overlap 1504092 GTTGAAAAGTAAAAA AATACCGCCC AAGT GGGCGGTATC TTAGTAAAGCAATGA TERM 1806 1504092 - 1504111 + T 100 -13.6 -3.13522 | opp_overlap 1504092, overlap 1504090 TGAAAAGTAAAAAAA TACCGCCC AAGT GGGCGGTA TCTTAGTAAAGCAAT TERM 1807 1504111 - 1504092 - T 100 -13.6 -5.79588 | opp_overlap 1504090 1504092 TGAAAAGTAAAAAAA TACCGCCC AAGT GGGCGGTA TCTTAGTAAAGCAAT Shewana3_1293 1506138 - 1504135 - | methyl-accepting chemotaxis sensory transducer TERM 1808 1506573 - 1506543 - g 76 -11.2 -3.33696 | opp_overlap 1506544 1506548, overlap 1506544 1506548 GCGCCCTTGAATTAA CCAAAGTGCCCACC GAT GATGAGCACTTTGT TGCCTTAAAATTAGA TERM 1809 1506544 - 1506572 + G 73 -10.3 -3.19246 | opp_overlap 1506544 1506543 1506548, overlap 1506548 CGCCCTTGAATTAAC CAAAGTGCCCACC GAT GATGAGCACTTTG TTGCCTTAAAATTAG TERM 1810 1506572 - 1506544 - g 83 -14.7 -2.60075 | opp_overlap 1506544 1506548, overlap 1506543 1506548 CGCCCTTGAATTAAC CAAAGTGCCCACC GAT GATGAGCACTTTG TTGCCTTAAAATTAG TERM 1811 1506568 - 1506548 - g 80 -9.7 -4.00348 | opp_overlap 1506544 1506548, overlap 1506544 1506543 CTTGAATTAACCAAA GTGCCCACC GAT GATGAGCAC TTTGTTGCCTTAAAA Shewana3_1294 1506398 - 1506643 + | hypothetical protein Shewana3_1295 1509708 - 1506628 - | acriflavin resistance protein TERM 1812 1507380 - 1507367 - G 74 -8.1 -4.05747 | overlap 1507371 GACAGCGCAGACAAA GGCAC GGCT GTGCC TGAGGGGGTCACAAG TERM 1813 1508108 - 1508098 - G 76 -6.8 -4.5442 | GCCGGAAGCATAAAA CCCT AGC AGGG GAATTATCCCGATAA TERM 1814 1508890 - 1508865 - G 73 -8.9 -3.6761 | opp_overlap 1508864, overlap 1508863 GCGCCGCAACAAACA CGCCCTGCTCG CCAT CGACTAGGGCG ATACTGTCAGCGGGG TERM 1815 1509557 - 1509531 - G 76 -11.5 -3.29263 | ATACTTCGGTGACAA GCGCCTCGACC CGCTC GGCGGAGGCGC CGGGATAAGGGGTGA Shewana3_1296 1510832 - 1509711 - | RND family efflux transporter MFP subunit TERM 1816 1510875 - 1510918 + H 100 -10.5 -4.55491 | opp_overlap 1510874 1510877 1510879, overlap 1510874 TTAATTTTATGTAAC TAGACTTGCTAGTCTAGTT GTGCGG AACTAGACTGTCTAGTCTA TTTTATGCTTAACTA TERM 1817 1511029 - 1511018 - g 78 -5.8 -4.88795 | opp_overlap 1511028 AGTGAACAAAAGAAA CAGC AAGT GCTG GTGGCGGCCATTGAC TERM 1818 1511326 - 1511347 + G 73 -2.9 -5.00616 | overlap 1511329 GGCGCAATCTGAGAG CCACCCTGA AGTT TCAAGGTTG TTTTTTGAGGCGGGG Shewana3_1297 1510970 - 1511590 + | TetR family transcriptional regulator TERM 1819 1512232 - 1512248 + G 71 -6.5 -4.19953 | overlap 1512233 ATGTATGCCTTCGAG TCGGGCA ATA TGCTCGG TTTTGGCGTTGCGTA TERM 1820 1512435 - 1512447 + G 70 -4.8 -4.7254 | opp_overlap 1512433 CTTTGGTAATTCACG TCGC ACCGA GCGA TTTTTAGTCGCCGAT TERM 1821 1512631 - 1512612 - g 84 -13.6 -3.39327 | opp_overlap 1512616 1512630, overlap 1512616 GCTCGATATGGATAA CCAAGGCG CAGC CGCCTTGG ATCTCGAGTTCCGAT Shewana3_1298 1511704 - 1512651 + | hypothetical protein TERM 1822 1512655 - 1512693 + T 100 -13.8 -4.62069 | opp_overlap 1512655, overlap 1512658 TTCCGATTTTAATTA CTGGCCCAGCATGGCCTC TTT GAGGCTCTTCTGGGCTGG TTTTTCCCCTAGCCA TERM 1823 1512658 - 1512690 + T 100 -14.1 -3.25166 | opp_overlap 1512655, overlap 1512655 CGATTTTAATTACTG GCCCAGCATGGCCTC TTT GAGGCTCTTCTGGGC TGGTTTTTCCCCTAG Shewana3_1299 1513212 - 1512652 - | hypothetical protein TERM 1824 1512799 - 1512822 + g 100 -12.5 -4.17002 | GCCACGGCTTTTGTT GGCGACCAA GGTGAA TTGGTCGCC TTCTTTGATTTCATC TERM 1825 1513353 - 1513325 - R 76 -10.4 -2.92386 | overlap 1513322 CGAAACCAAAGAGGA GCGATAGCCTAA TCTGT TCAAGCTATCGC TTAGGAGGTAAATCA Shewana3_1300 1513937 - 1513458 - | hypothetical protein TERM 1826 1514017 - 1514007 - R 74 -4.6 -4.89477 | overlap 1514008 1514010 GTGCTAATAATAAAA CCAC CGA GCGG AGATATTGCCGCTCG TERM 1827 1514033 - 1514010 - R 81 -11 -3.32865 | overlap 1514007 1514008 CTAATAATAAAACCA CCGAGCGG AGATATTG CCGCTCGG AACCATAGTCTATTG Shewana3_1301 1516514 - 1514043 - | hypothetical protein TERM 1828 1514201 - 1514213 + g 70 -2.7 -4.88736 | TTATCCAAGTCTGCG TATCT GAA GGATA TTTTTCTAAGTAGTC TERM 1829 1516709 - 1516691 - H 75 -5.4 -4.81083 | opp_overlap 1516691, overlap 1516705 TTGAACTATGAAAAA CTACATAT ATT ATATATAG TTGCCTATAATAGGC Shewana3_1302 1516864 - 1517859 + | polysaccharide biosynthesis protein Shewana3_1303 1517856 - 1518998 + | polysaccharide biosynthesis protein Shewana3_1304 1520066 - 1519014 - | N-acetylneuraminate synthase Shewana3_1305 1520940 - 1520128 - | hypothetical protein Shewana3_1306 1521835 - 1520942 - | hypothetical protein Shewana3_1307 1522539 - 1521838 - | hypothetical protein Shewana3_1308 1524113 - 1522536 - | GCN5-related N-acetyltransferase Shewana3_1309 1524835 - 1524119 - | acylneuraminate cytidylyltransferase TERM 1830 1524576 - 1524597 + g 70 -10.1 -3.31537 | overlap 1524577 1524579 TTTAGCCAGTGGATG GCATGGCGG ATCA CCGCCATGG TTCCTGTCATATCGT TERM 1831 1524577 - 1524596 + g 78 -13.6 -2.5844 | overlap 1524576 1524579 TTAGCCAGTGGATGG CATGGCGG ATCA CCGCCATG GTTCCTGTCATATCG Shewana3_1310 1525150 - 1524872 - | hypothetical protein Shewana3_1311 1526442 - 1525147 - | hypothetical protein Shewana3_1312 1526849 - 1526652 - | hypothetical protein TERM 1832 1526909 - 1526919 + r 75 -3.2 -5.1861 | TTGCGTAGTATTAGC TGTC TCA GGCA TTTTTTAATAATCAC TERM 1833 1527644 - 1527669 + r 82 -7.7 -4.42653 | gap 1, opp_overlap 1527643 TTTACAAGAACTTAG TTGGTG-AGTGG TTA CCACTATACCAA TTTTATCAGTACGGT TERM 1834 1528041 - 1528067 + r 79 -10.8 -2.92026 | overlap 1528043 AGGGACTCGAACCCC GATCGGCCGCTT AGG AGGCGGCTGCTC TATCCTGTTGAGCTA TERM 1835 1528093 - 1528108 + r 75 -5.4 -4.84539 | AGCTATGAAGAGACG CCAGTG ATTA TACTGG TTTTATCTTTGATTA Shewana3_1313 1529311 - 1528145 - | hypothetical protein Shewana3_1314 1529551 - 1530183 + | hypothetical protein Shewana3_1315 1530180 - 1530629 + | hypothetical protein TERM 1836 1530704 - 1530665 - T 79 -11 -3.21099 | gap 1, opp_overlap 1530674, overlap 1530669 1530674 TCCTTGCAGTACCAA TAAACAAAAGCCGCACTCA GTT TTAGCGCGGCTTTT-TTTA TATCCCGTTTACTAT TERM 1837 1530701 - 1530669 - T 93 -9.9 -4.2704 | opp_overlap 1530674, overlap 1530665 1530674 TGCAGTACCAATAAA CAAAAGCCGCACTCA GTT TTAGCGCGGCTTTTT TTATATCCCGTTTAC TERM 1838 1530696 - 1530674 - T 100 -9.8 -5.12172 | opp_overlap 1530674, overlap 1530669 1530665 TACCAATAAACAAAA GCCGCACTCA GTT TTAGCGCGGC TTTTTTTATATCCCG TERM 1839 1530674 - 1530696 + T 100 -7.6 -5.71712 | opp_overlap 1530669 1530665 1530674 TACCAATAAACAAAA GCCGCACTCA GTT TTAGCGCGGC TTTTTTTATATCCCG Shewana3_1316 1531157 - 1530732 - | FlgN family protein TERM 1840 1531086 - 1531049 - G 71 -5.5 -4.4715 | opp_overlap 1531056, overlap 1531055 CCGCAAGCGATAAAA GCAAATCGGCGTTTTGG TCAA CCAAAGCGCCTTTTTCC TTAAGAATAATCTGT TERM 1841 1531056 - 1531079 + g 100 -13.2 -4.86621 | opp_overlap 1531055 1531049 CGATAAAAGCAAATC GGCGTTTTGG TCAA CCAAAGCGCC TTTTTCCTTAAGAAT Shewana3_1317 1531486 - 1531160 - | anti-sigma-28 factor, FlgM TERM 1842 1531205 - 1531217 + g 71 -7.7 -4.1196 | TTCGAAGCTGGCAAT GTTGG CCG CCAAC TTTTCGGGATCAATT flgA 1532269 - 1531562 - | flagellar basal body P-ring biosynthesis protein FlgA Shewana3_1319 1532475 - 1533395 + | response regulator receiver modulated CheW protein Shewana3_1320 1533497 - 1534336 + | MCP methyltransferase, CheR-type TERM 1843 1534377 - 1534358 - f 100 -10.8 -5.35815 | opp_overlap 1534358 GATATTAAATAAAAA TTACCGAC ATGA GTCGGTAA TTTTTTACCCCGTCA TERM 1844 1534358 - 1534377 + F 100 -10.8 -5.02074 | opp_overlap 1534358 GATATTAAATAAAAA TTACCGAC ATGA GTCGGTAA TTTTTTACCCCGTCA flgB 1534481 - 1534885 + | flagellar basal body rod protein FlgB flgC 1534888 - 1535304 + | flagellar basal body rod protein FlgC flgD 1535329 - 1536108 + | flagellar basal body rod modification protein flgE 1536178 - 1537539 + | flagellar hook protein FlgE TERM 1845 1537552 - 1537589 + F 100 -11.3 -4.28791 | overlap 1537554 1537555 TAAGTTAATCTTGCC TCTGCTAAGTGTTGCCG CAAG CGGCAACACTTAGCCTC TTTCTGTTGTGCATT TERM 1846 1537554 - 1537587 + F 100 -18.3 -3.73486 | overlap 1537552 1537555 AGTTAATCTTGCCTC TGCTAAGTGTTGCCG CAAG CGGCAACACTTAGCC TCTTTCTGTTGTGCA TERM 1847 1537555 - 1537586 + F 100 -21.8 -2.83369 | overlap 1537554 1537552 GTTAATCTTGCCTCT GCTAAGTGTTGCCG CAAG CGGCAACACTTAGC CTCTTTCTGTTGTGC flgF 1537711 - 1538454 + | flagellar basal body rod protein FlgF flgG 1538465 - 1539253 + | flagellar basal body rod protein FlgG flgH 1539266 - 1539940 + | flagellar basal body L-ring protein TERM 1848 1540512 - 1540526 + G 71 -5.6 -4.57569 | TTATTTGACGTTTAA TCTGCG CCG CGCCGA TTTTTCAACGGCTCA flgI 1539952 - 1541043 + | flagellar basal body P-ring protein flgJ 1541061 - 1542230 + | peptidoglycan hydrolase TERM 1849 1543612 - 1543598 - g 74 -7.8 -4.17048 | overlap 1543599 CTTCGCCTAAAATAA CCGCTG ATG CAGCGA ACTCAGGTAATACCC Shewana3_1330 1542271 - 1544196 + | flagellar hook-associated protein FlgK flgL 1544208 - 1545419 + | flagellar hook-associated protein FlgL Shewana3_1332 1545522 - 1546343 + | flagellin domain-containing protein TERM 1850 1546378 - 1546423 + F 70 -2.9 -4.98758 | gap 3, overlap 1546379 1546380 CAATACAGGACGTTG C-TTTTGCCTAC--TGTCTCCT AAAAA AGGAGATATAGTAGGCAAAGTG TTTTTATACGTTTTT TERM 1851 1546379 - 1546421 + F 71 -6.6 -4.08693 | gap 2, overlap 1546378 1546380 AATACAGGACGTTGC TTTTGCCTAC--TGTCTCCT AAAAA AGGAGATATAGTAGGCAAAG TGTTTTTATACGTTT Shewana3_1333 1546601 - 1547413 + | flagellin domain-containing protein TERM 1852 1547440 - 1547463 + F 83 -11 -3.55761 | AGTATAAGGCTCTAA GGGAGGTTCG GCGA CGGATCTCCC TTTGCCACATAAATG Shewana3_1334 1547544 - 1547930 + | flagellar protein FlaG protein TERM 1853 1548065 - 1548054 - g 70 -2.2 -5.03314 | TGGATGCTGAAAAAA CTCC TAAA GAAG CAATGTTTAAAGCAC Shewana3_1335 1547975 - 1549345 + | flagellar hook-associated 2 domain-containing protein Shewana3_1336 1549364 - 1549693 + | hypothetical protein fliS 1549700 - 1550113 + | flagellar protein FliS TERM 1854 1550128 - 1550165 + F 83 -10.8 -3.56216 | opp_overlap 1550137, overlap 1550137 ACCCTACTTTTAAGT AATAAAAAAGACGCAC CCTAAA GTGCGTCTTTTTTGTC TTGTGTCAATTAATT TERM 1855 1550137 - 1550156 + F 100 -9.3 -5.53436 | opp_overlap 1550137, overlap 1550128 TTAAGTAATAAAAAA GACGCAC CCTAAA GTGCGTC TTTTTTGTCTTGTGT TERM 1856 1550156 - 1550137 - f 100 -10 -5.5604 | opp_overlap 1550128 1550137 TTAAGTAATAAAAAA GACGCACC CTAA AGTGCGTC TTTTTTGTCTTGTGT Shewana3_1338 1550400 - 1551833 + | sigma-54 dependent trancsriptional regulator Shewana3_1339 1551942 - 1553024 + | PAS/PAC sensor signal transduction histidine kinase Shewana3_1340 1553017 - 1554357 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1857 1554443 - 1554469 + F 100 -11.7 -4.24948 | gap 1, overlap 1554445 TGCAATTCTTTTTAG CT-CGGCCAAGT AAAA ACTTGGCCGTAG TTTTGCATATCCTCG TERM 1858 1554445 - 1554466 + F 100 -14.5 -3.12666 | overlap 1554443 CAATTCTTTTTAGCT CGGCCAAGT AAAA ACTTGGCCG TAGTTTTGCATATCC Shewana3_1341 1554533 - 1554871 + | flagellar hook-basal body complex subunit FliE fliF 1554916 - 1556601 + | flagellar MS-ring protein TERM 1859 1556662 - 1556615 - g 70 -4.3 -4.70353 | gap 1 GAGAATAAATCAAAA GACGCCGCTGAAA-CCTCAA GTTTCAATA TTAAGGATCTCAGTGGCATC GAAAAAACGGCGATT fliG 1556594 - 1557640 + | flagellar motor switch protein G fliH 1557627 - 1558589 + | flagellar assembly protein H fliI 1558558 - 1559895 + | flagellum-specific ATP synthase Shewana3_1346 1559907 - 1560353 + | flagellar export protein FliJ Shewana3_1347 1560513 - 1562252 + | flagellar hook-length control protein TERM 1860 1562291 - 1562274 - f 84 -9.9 -3.78436 | opp_overlap 1562268 AACCTATAGTAATAA TGCGGAT TATA ATCCGCA TCCTAATCCATTCCC fliL 1562335 - 1562859 + | flagellar basal body-associated protein FliL fliM 1562900 - 1563931 + | flagellar motor switch protein FliM fliN 1563944 - 1564318 + | flagellar motor switch protein TERM 1861 1564462 - 1564490 + G 76 -7.4 -4.33487 | gap 1, opp_overlap 1564461 TGAACCTTCGCAAAT GGCCGCCGCAGCG AGCA TGCT-TGGCGGTC TTATTTTAGTGTTAT Shewana3_1351 1564352 - 1564759 + | flagellar biosynthesis protein, FliO fliP 1564756 - 1565502 + | flagellar biosynthesis protein FliP Shewana3_1353 1565520 - 1565789 + | flagellar biosynthetic protein FliQ fliR 1565794 - 1566591 + | flagellar biosynthesis protein FliR TERM 1862 1566693 - 1566681 - g 78 -6.2 -4.83615 | CAGGCGCGAGAAAAA GGGC AGGTA GCCC GTTCAAAAGAGTTAG TERM 1863 1567453 - 1567468 + G 74 -4.6 -4.79352 | opp_overlap 1567454, overlap 1567454 TTAAGTACGATGTAA AGCGCT CTGC AGCGCC TTTTGTTATCGCTAA TERM 1864 1567467 - 1567454 - g 70 -8.1 -3.70037 | opp_overlap 1567453 1567454 TAAGTACGATGTAAA GCGCT CTGC AGCGC CTTTTGTTATCGCTA TERM 1865 1567544 - 1567572 + G 78 -9.6 -3.86015 | gap 1 ACATAATATTGCGAT TGTCTCGGCGCCA CCGC TGGCGC-GAGCCA TTTATCACACCACTA flhB 1566609 - 1567739 + | flagellar biosynthesis protein FlhB TERM 1866 1568777 - 1568790 + G 70 -4.5 -4.70879 | overlap 1568778 GTATTGTGCCTGGCA TGCCA CATA TGGCG TTTTTAAGCTTTGCC flhA 1567858 - 1569957 + | flagellar biosynthesis protein FlhA flhF 1569969 - 1571345 + | flagellar biosynthesis regulator FlhF Shewana3_1358 1571350 - 1572231 + | cobyrinic acid a,c-diamide synthase fliA 1572224 - 1572937 + | flagellar biosynthesis sigma factor Shewana3_1360 1572985 - 1573368 + | response regulator receiver protein TERM 1867 1573759 - 1573793 + G 82 -12.2 -3.55071 | opp_overlap 1573758 1573770 1573790, overlap 1573770 TTGGGACAAATTGAT GCGCCGTGAAATCGCT CTG AGCGATTTTAAAGCGC TTTGCCACAATGTGC TERM 1868 1573770 - 1573782 + G 71 -7.7 -4.10453 | opp_overlap 1573770 1573758, overlap 1573759 TGATGCGCCGTGAAA TCGCT CTG AGCGA TTTTAAAGCGCTTTG Shewana3_1361 1573382 - 1574119 + | chemotaxis phosphatase, CheZ TERM 1869 1575219 - 1575200 - g 86 -9.2 -4.56597 | overlap 1575212 1575215 GCGGTTGCTGAAAAA GCCCCTGC TAAA GCAGCGGC AGCAGCGTCTGCTAA Shewana3_1362 1574135 - 1576423 + | CheA signal transduction histidine kinases Shewana3_1363 1576442 - 1577566 + | chemotaxis-specific methylesterase TERM 1870 1577607 - 1577575 - g 76 -8.5 -4.19238 | opp_overlap 1577578 1577584, overlap 1577577 1577578 TGGCTAAGTCGAAAA CACCGATAAGCACAA ATA TTGTGCTTATCATAG TGTTAATGGCGATCG TERM 1871 1577605 - 1577577 - g 77 -9.7 -3.69618 | opp_overlap 1577578 1577584, overlap 1577575 1577578 GCTAAGTCGAAAACA CCGATAAGCACAA ATA TTGTGCTTATCAT AGTGTTAATGGCGAT TERM 1872 1577578 - 1577604 + G 71 -11 -2.77523 | opp_overlap 1577577 1577575 1577578, overlap 1577584 CTAAGTCGAAAACAC CGATAAGCACAA ATA TTGTGCTTATCA TAGTGTTAATGGCGA TERM 1873 1577604 - 1577578 - g 79 -13.2 -2.81289 | opp_overlap 1577578 1577584, overlap 1577577 1577575 CTAAGTCGAAAACAC CGATAAGCACAA ATA TTGTGCTTATCA TAGTGTTAATGGCGA Shewana3_1364 1577559 - 1578095 + | hypothetical protein Shewana3_1365 1578160 - 1578951 + | cobyrinic acid a,c-diamide synthase TERM 1874 1578938 - 1578966 + G 95 -5.4 -5.57054 | GGGAGTTTGGCCATG TCAAAATCGGTT GATGA AACTGTTTTTGA TTTTTTTGAATTATT TERM 1875 1579444 - 1579428 - g 70 -8.7 -3.5361 | TAATCATTGAGACAA CACCCGA GAC TCAGGTG GGGTTTGCCCCTCCA Shewana3_1366 1578935 - 1579942 + | CheW protein Shewana3_1367 1579950 - 1580444 + | CheW protein TERM 1876 1580457 - 1580484 + F 90 -11.4 -3.70676 | opp_overlap 1580460 1580465, overlap 1580453 1580458 1580460 TAAGCTTCCATGATG AGACGACAGATT AGCT AATCTGTCGTCC TTGCTTTTCACTATA TERM 1877 1580458 - 1580483 + F 100 -14.9 -2.81683 | opp_overlap 1580460 1580465, overlap 1580457 1580453 1580460 AAGCTTCCATGATGA GACGACAGATT AGCT AATCTGTCGTC CTTGCTTTTCACTAT TERM 1878 1580460 - 1580481 + F 83 -11.7 -2.94735 | opp_overlap 1580460 1580465, overlap 1580458 1580457 1580453 GCTTCCATGATGAGA CGACAGATT AGCT AATCTGTCG TCCTTGCTTTTCACT TERM 1879 1580481 - 1580460 - f 81 -11.7 -2.82516 | opp_overlap 1580460 1580458 1580457 1580453, overlap 1580465 GCTTCCATGATGAGA CGACAGATT AGCT AATCTGTCG TCCTTGCTTTTCACT Shewana3_1368 1580599 - 1580997 + | hypothetical protein Shewana3_1369 1581336 - 1581025 - | FlhB domain-containing protein Shewana3_1370 1583400 - 1581349 - | hypothetical protein TERM 1880 1582753 - 1582766 + g 74 -6.7 -4.30576 | opp_overlap 1582752 AAATGCAGCAATTAT CTGAG CAGG CTCAG TTTTAGTAATGACCA Shewana3_1371 1583622 - 1584407 + | VacJ family lipoprotein TERM 1881 1585375 - 1585355 - g 76 -11.1 -3.25652 | overlap 1585353 GCTATCGAATTAACA CGCTATCGC GCC GCGATTGCG CAAGCAGGTAAGGGT Shewana3_1372 1584530 - 1585633 + | response regulator receiver protein TERM 1882 1585804 - 1585775 - T 100 -16.7 -3.98083 | opp_overlap 1585775 1585782, overlap 1585782 TATCTAAGTTACAAA TAAAAAACGCTGC CATG GCAGCGTTTTTTA TTGATTGAACCTAAC TERM 1883 1585775 - 1585804 + T 100 -16.7 -3.34895 | opp_overlap 1585775 1585782, overlap 1585782 TATCTAAGTTACAAA TAAAAAACGCTGC CATG GCAGCGTTTTTTA TTGATTGAACCTAAC TERM 1884 1585782 - 1585797 + T 100 -10.4 -5.5604 | opp_overlap 1585775 1585782, overlap 1585775 GTTACAAATAAAAAA CGCTGC CATG GCAGCG TTTTTTATTGATTGA TERM 1885 1585797 - 1585782 - T 100 -10.4 -5.72622 | opp_overlap 1585782 1585775, overlap 1585775 GTTACAAATAAAAAA CGCTGC CATG GCAGCG TTTTTTATTGATTGA Shewana3_1373 1587294 - 1585825 - | amino acid/peptide transporter TERM 1886 1586583 - 1586595 + g 70 -3.3 -4.86033 | overlap 1586584 TGGTGAGTGGCTCTT TGCGA ACT TCGCC TTTTTCTGCCGCTTT TERM 1887 1587060 - 1587040 - G 76 -6.8 -4.56597 | opp_overlap 1587057, overlap 1587055 GCGTTGGCCTAAAAA GGTGTCTG CTAAC CAGCCACC GATAAGCGGCGTTAA Shewana3_1374 1587769 - 1588269 + | transcription antitermination protein nusG TERM 1888 1588966 - 1588950 - g 77 -8.7 -4.04355 | AAAAAATACATCAAA GCGGTTC CCA AAACCGC AATATTAGTAGGCAT TERM 1889 1590422 - 1590398 - g 72 -3.5 -4.77036 | opp_overlap 1590413, overlap 1590407 GCCCATTATTAAAAA GCTAAAAGAGC AAA GCCGTTTTGGC GATGCCGCTAAACTG Shewana3_1375 1588920 - 1591433 + | polysaccharide export protein Shewana3_1376 1591674 - 1592630 + | lipopolysaccharide biosynthesis Shewana3_1377 1592670 - 1593659 + | sugar transferase Shewana3_1378 1593660 - 1594409 + | glycosyl transferase family protein Shewana3_1379 1594422 - 1595501 + | dTDP-glucose 4,6 dehydratase TERM 1890 1596410 - 1596399 - g 70 -4.4 -4.60041 | opp_overlap 1596399 ACCCATGCTTAAAAA TGAC TATG GTCA GTATTTAGCACACTT Shewana3_1380 1595572 - 1596432 + | glucose-1-phosphate thymidylyltransferase TERM 1891 1596937 - 1596916 - g 74 -7.3 -4.19472 | opp_overlap 1596923 1596924, overlap 1596921 1596922 GAATATATGGTAAAA GCAAACTCG CAGG CGAACTTGC TGTTGCTGCAGCTTG Shewana3_1381 1596531 - 1597406 + | dTDP-4-dehydrorhamnose reductase Shewana3_1382 1597487 - 1598038 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 1892 1598497 - 1598508 + G 70 -4.4 -4.61873 | TAATTTTTCACTATC TCAG CTTG CTGA TTTTAGTTTGTCAAA TERM 1893 1599039 - 1599029 - g 73 -5.4 -4.61868 | opp_overlap 1599029, overlap 1599024 GATTTATACACAAAA CCTA ATT TAGG TTTTAGCACATTGGC TERM 1894 1599302 - 1599323 + G 73 -3 -4.9792 | overlap 1599304 1599305 ATAACCGTGTATTTG TGTTGGTC TTTTGT GACCAGTA TTTTTGTGTACAATA Shewana3_1383 1598156 - 1599400 + | hypothetical protein TERM 1895 1599418 - 1599408 - f 71 -4 -4.84363 | TTAAATGACTAAAAA CTAA CAT TTAG AGTGCAACTCTGCAC TERM 1896 1600048 - 1600067 + G 74 -2.2 -5.1523 | TTGCAAATGGAGAGT TGATTTTT AATG ATAAATCA TTTTTATATTCTGAA Shewana3_1384 1599495 - 1600250 + | hypothetical protein TERM 1897 1600609 - 1600594 - g 70 -2.6 -5.03715 | ATCAGGTGTAAAAAA TGACTT TGCT AAATCA TTTTTTAAAATTACG Shewana3_1385 1600280 - 1600924 + | hypothetical protein Shewana3_1386 1600921 - 1601691 + | glycosyl transferase family protein Shewana3_1387 1601734 - 1602900 + | UDP-glucose/GDP-mannose dehydrogenase TERM 1898 1602931 - 1602947 + T 82 -5.8 -4.98758 | opp_overlap 1602931 CTATCTTATTTAAAG GCCGGA GTGTA TTCGGC TTTTTATGAGTTTTT Shewana3_1388 1603824 - 1603063 - | hypothetical protein TERM 1899 1603900 - 1603912 + r 75 -9.1 -3.57971 | opp_overlap 1603888, overlap 1603888 AATGCAGTGGCGTAT CGCAG CTA CTGCG TTTACAGCTAAATCT Shewana3_1389 1604426 - 1603920 - | lipoprotein Shewana3_1390 1604737 - 1606098 + | GAF sensor signal transduction histidine kinase Shewana3_1391 1606171 - 1607109 + | glucose-1-phosphate thymidylyltransferase Shewana3_1392 1607096 - 1607632 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 1900 1607617 - 1607645 + T 100 -15.3 -4.94962 | opp_overlap 1607614 GTCTGAAAGGGATGC TGCCGCTAGCGCC TAA GGTACTAGCGGCA TTTTGTTTGCGTTAT Shewana3_1393 1610032 - 1607657 - | protein of unknown function DUF940, membrane lipoprotein putative TERM 1901 1608526 - 1608506 - G 91 -9 -4.74917 | overlap 1608507 ACTAAACATATAAAA CCCTTCGG AACCG CCGAAGGA TTGGGACATGGTAGG TERM 1902 1608525 - 1608507 - G 75 -10.3 -3.43323 | overlap 1608506 CTAAACATATAAAAC CCTTCGG AACCG CCGAAGG ATTGGGACATGGTAG Shewana3_1394 1610820 - 1610032 - | hypothetical protein TERM 1903 1610366 - 1610356 - G 78 -4 -5.19251 | opp_overlap 1610356, overlap 1610360 CAACACTAATAAAAA TTGA CCA TCAA TTATGGGATTGTAGG Shewana3_1395 1611541 - 1610831 - | putative lipoprotein TERM 1904 1611668 - 1611649 - R 100 -10 -5.79526 | opp_overlap 1611652 ATACCCTAAAAAAAA CAACCGCC AGAA GGCGGTTA TTAGCGATATGTACT TERM 1905 1611652 - 1611665 + r 78 -9.5 -3.64755 | opp_overlap 1611649 CCCTAAAAAAAACAA CCGCC AGAA GGCGG TTATTAGCGATATGT Shewana3_1396 1611941 - 1611693 - | hypothetical protein Shewana3_1397 1613337 - 1612213 - | patatin TERM 1906 1613489 - 1613513 + r 100 -14.4 -3.91402 | opp_overlap 1613489, overlap 1613483 GGCGGGAATAAAAAA CGCACTTGAG GGAGA CTCAAGTGCG TTTGCATTTATATCG TERM 1907 1613513 - 1613489 - R 100 -14.4 -5.4505 | opp_overlap 1613489 1613483 GGCGGGAATAAAAAA CGCACTTGAG GGAGA CTCAAGTGCG TTTGCATTTATATCG Shewana3_1398 1615313 - 1613601 - | prolyl-tRNA synthetase TERM 1908 1613659 - 1613673 + g 76 -3.4 -5.09762 | overlap 1613660 GGCACATCTTGCTTT TCACCG GTG CGGCGG TTTTTGTATTCAAAT TERM 1909 1615256 - 1615273 + g 70 -3.3 -4.89063 | overlap 1615258 1615259 ACTGATGGCTGATGA CTTCTGC ATTC GCAGGTG TTTCTTTTTGAGTAG Shewana3_1399 1616141 - 1615512 - | hexapaptide repeat-containing transferase Shewana3_1400 1616876 - 1616142 - | hypothetical protein TERM 1910 1616252 - 1616270 + g 80 -3 -5.24129 | AAGCCACTTGATATA GCTTGGGA TCA TCCTTGGC TTTTTTATAGGCAGG Shewana3_1401 1617351 - 1616971 - | putative lipoprotein TERM 1911 1617025 - 1617039 + g 82 -11.4 -3.70853 | GAGGGCGCGGCTGAC GCAGCC TTG GGCTGC TTCTTCCATCATTAC TERM 1912 1617379 - 1617401 + r 100 -13.4 -3.30635 | opp_overlap 1617380, overlap 1617380 GAGTAAGGGTAAATA AGCGCAGTCC AAC GGACTGCGCG TTATCGAGCGATTTA TERM 1913 1617400 - 1617380 - R 100 -16.9 -3.97019 | opp_overlap 1617380 1617379 AGTAAGGGTAAATAA GCGCAGTCC AAC GGACTGCGC GTTATCGAGCGATTT TERM 1914 1617380 - 1617400 + r 100 -16.9 -2.5806 | opp_overlap 1617380, overlap 1617379 AGTAAGGGTAAATAA GCGCAGTCC AAC GGACTGCGC GTTATCGAGCGATTT Shewana3_1402 1618718 - 1617429 - | hypothetical protein Shewana3_1403 1621792 - 1618718 - | amidohydrolase TERM 1915 1619621 - 1619635 + g 77 -10 -3.78775 | ACTCTGTTTGACGTT TTCGCC AAG GGCGAA TTTGATACTGGCAGG TERM 1916 1621911 - 1621945 + r 100 -18.9 -3.19642 | opp_overlap 1621879 1621920, overlap 1621920 GTGGTGGCATTCAGG CATAAAAAAGCTCGC AGGGC GCGAGCTTTTTTATG TTACTCAGTGGTAAT TERM 1917 1621920 - 1621936 + r 100 -9.4 -5.49569 | opp_overlap 1621920, overlap 1621911 TTCAGGCATAAAAAA GCTCGC AGGGC GCGAGC TTTTTTATGTTACTC TERM 1918 1621936 - 1621920 - R 100 -10.1 -5.28176 | opp_overlap 1621920 1621911 TTCAGGCATAAAAAA GCTCGCA GGG CGCGAGC TTTTTTATGTTACTC Shewana3_1404 1622384 - 1621992 - | histone family protein nucleoid-structuring protein H-NS TERM 1919 1622116 - 1622126 + g 80 -4.6 -5.08824 | TGGTATTTTGCTGGA CGTG GAG CGCG TTTTTTACCTGCAGC TERM 1920 1622227 - 1622244 + g 70 -9.9 -3.28219 | overlap 1622225 ATTTTAGCATTACGT GCAGCAA TAGC TTGCTGC TCTTCTGCTGCCATT TERM 1921 1622485 - 1622475 - H 70 -2.6 -4.99947 | TCGAATCAAATAAAA TTAT GCA ATAA ACAGAAATTAAATAT TERM 1922 1622513 - 1622487 - H 71 -6.8 -4.23647 | opp_overlap 1622486 1622493, overlap 1622493 AAATTATGCAATAAA CAGAAATTAAAT ATT ATTTAATTTTTG AACTTTTTAAATATG TERM 1923 1622493 - 1622507 + H 71 -4.4 -4.7657 | opp_overlap 1622487 1622493, overlap 1622486 TGCAATAAACAGAAA TTAAAT ATT ATTTAA TTTTTGAACTTTTTA TERM 1924 1622563 - 1622548 - H 73 -5.4 -4.60255 | ATAAGTGTTCAAAAA TGTGGC CAAT ACCACA GTCTTAAAAAATGCA TERM 1925 1622639 - 1622656 + H 87 -8.5 -4.45083 | AGTGGCTCTATCCTG CATTGGT GATG ACCAATG TTTTGTCCATGTACA Shewana3_1405 1622695 - 1623444 + | electron transfer flavoprotein beta-subunit TERM 1926 1623715 - 1623693 - g 77 -9.9 -3.79747 | GGACTTAGCACCAAA CTACAGCCA TATCT TGGCTGCAG CATCGAGCGCTGGCA Shewana3_1406 1623445 - 1624371 + | electron transfer flavoprotein, alpha subunit TERM 1927 1624394 - 1624433 + F 95 -7.8 -4.99035 | opp_overlap 1624395 1624396 1624399, overlap 1624396 1624399 CGTGATCTAAGTCAA AGTAAGCGGCTTTGCGGT GGCA ACTGCTTAGCCGCTTATG TTTTTATCTGCCTCA TERM 1928 1624396 - 1624431 + F 100 -12.6 -4.11744 | opp_overlap 1624395 1624396 1624399, overlap 1624394 1624399 TGATCTAAGTCAAAG TAAGCGGCTTTGCGGT GGCA ACTGCTTAGCCGCTTA TGTTTTTATCTGCCT TERM 1929 1624431 - 1624396 - f 75 -10.4 -2.8585 | opp_overlap 1624396 1624394 1624399, overlap 1624395 1624399 TGATCTAAGTCAAAG TAAGCGGCTTTGCGGT GGCA ACTGCTTAGCCGCTTA TGTTTTTATCTGCCT TERM 1930 1624399 - 1624428 + F 88 -9.9 -4.16226 | opp_overlap 1624396 1624395 1624399, overlap 1624396 1624394 TCTAAGTCAAAGTAA GCGGCTTTGCGGT GGCA ACTGCTTAGCCGC TTATGTTTTTATCTG TERM 1931 1624449 - 1624464 + F 73 -8.2 -3.63515 | TTTTTATCTGCCTCA CGCCCG TGCA TGGGCG TTCTTAGAAGTAGAG Shewana3_1407 1624743 - 1626311 + | Na+/H+ antiporter NhaC TERM 1932 1626378 - 1626401 + T 100 -12.5 -5.64873 | opp_overlap 1626378 AGCGCTAAAAACAAA TCAGCCAGC AATTAC GCTGGCTGA TTTTTTATTGTTCAC TERM 1933 1626401 - 1626378 - T 100 -13.2 -4.86385 | opp_overlap 1626378 AGCGCTAAAAACAAA TCAGCCAGCA ATTA CGCTGGCTGA TTTTTTATTGTTCAC Shewana3_1408 1628577 - 1626427 - | peptidyl-dipeptidase Dcp TERM 1934 1626706 - 1626729 + g 70 -2.4 -5.01732 | gap 1, opp_overlap 1626698 CTTATAACGTGGTGG CACGGCGGTGA TAT TTAA-GCCGTG TTTTTTCAGCGCATT TERM 1935 1627591 - 1627601 + g 70 -4.6 -4.72486 | overlap 1627598 AAACATGCTGTATAC CGCT TCA GGCG TTTTTGCCATTTGTG TERM 1936 1628271 - 1628282 + g 74 -2.2 -5.08824 | gap 1 TCGATGCACGGGTCA GCAGG GCA CC-GC TTTTTTCCATGGCGA TERM 1937 1628708 - 1628687 - R 100 -15.9 -6.01187 | opp_overlap 1628682 1628681 AAGTAAACAAAAAAA GCGCCCTAC AACC GTAGGGCGC TTGAACTATTTTCTT Shewana3_1409 1630839 - 1628749 - | hypothetical protein TERM 1938 1630705 - 1630750 + g 75 -10.3 -3.38522 | overlap 1630704 1630706 CGTCCATGGGTCTCC AGGCTTACCGGGTTGACCTGG ATCG CCGGGTTGGCCTGGTGCGCCG TCTTTACCATCACTG TERM 1939 1630706 - 1630749 + g 78 -13.8 -2.62792 | overlap 1630705 1630704 GTCCATGGGTCTCCA GGCTTACCGGGTTGACCTGG ATCG CCGGGTTGGCCTGGTGCGCC GTCTTTACCATCACT Shewana3_1410 1631379 - 1631957 + | thymidine kinase TERM 1940 1632629 - 1632640 + G 82 -7.2 -4.59853 | opp_overlap 1632628 1632629 GCGCTACAGGAATAC GCCC AAAT GGGC TTTTTCCCGCCTTAC TERM 1941 1633711 - 1633689 - g 78 -4.1 -5.14563 | gap 1 CCCTCTATGAAAAAA CCG-AGACGG CGAA CCGTGTGCGG GTGCAAACCGACAGT TERM 1942 1634661 - 1634647 - g 70 -2.7 -4.84017 | overlap 1634634 AACGCGCCATAAAAA CGCGC GGGAT GTGCG GGTACAGGTAATGCT Shewana3_1411 1632245 - 1635316 + | hypothetical protein TERM 1943 1635393 - 1635420 + T 100 -11.3 -5.06414 | gap 1, opp_overlap 1635393 CTTAGATAAAGCAAA CCCCGC-AGCCG TGAAT CGGTTTGCGGGG TTTTTATTGGCACCG TERM 1944 1635420 - 1635393 - T 83 -9.1 -4.18042 | gap 1, opp_overlap 1635393 CTTAGATAAAGCAAA CCCCGC-AGCCG TGAAT CGGTTTGCGGGG TTTTTATTGGCACCG Shewana3_1412 1636821 - 1635442 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 1945 1636104 - 1636081 - G 79 -6.7 -4.66609 | GATTTCATCTAAAAA GAGTGTGCC GCCGTT GGCATACTC AAACTTACCGATACG Shewana3_1413 1638629 - 1636818 - | ATPase domain-containing protein TERM 1946 1638279 - 1638253 - G 73 -2.8 -5.04601 | overlap 1638254 1638255 CCGATAAACGAAAAA CTCTGCTGCCAG TTG CTGGCGGCAATC GCAATGCCTAGGGCG TERM 1947 1638683 - 1638664 - R 100 -13.6 -4.88795 | opp_overlap 1638668 ACTGAATAAAACAAA GCGAGCCT GAGT AGGCTCGC TTAAAAACTATCTAG TERM 1948 1638725 - 1638701 - R 100 -13.1 -3.42726 | opp_overlap 1638700 1638699, overlap 1638705 AAAAACTATCTAGAA TCAAGGAATAA TCC TTATTCCTTGA GATTAATATCCGTTG Shewana3_1414 1640125 - 1638728 - | TRAP dicarboxylate transporter, DctM subunit Shewana3_1415 1640769 - 1640125 - | tripartite ATP-independent periplasmic transporter DctQ TERM 1949 1640824 - 1640792 - R 100 -12.8 -3.53012 | opp_overlap 1640794, overlap 1640794 CTCCCCTCGCTCAAA TACCGCTTAACCCC AAATA GAGGTTAAGCGGTT TATTTCATTATTGTT TERM 1950 1640794 - 1640822 + r 100 -13.2 -4.62392 | opp_overlap 1640792 1640794 CCCCTCGCTCAAATA CCGCTTAACCCC AAATA GAGGTTAAGCGG TTTATTTCATTATTG TERM 1951 1640822 - 1640794 - R 100 -15.4 -3.34398 | opp_overlap 1640794, overlap 1640792 CCCCTCGCTCAAATA CCGCTTAACCCC AAATA GAGGTTAAGCGG TTTATTTCATTATTG Shewana3_1416 1641854 - 1640832 - | TRAP dicarboxylate transporter, DctP subunit Shewana3_1417 1642479 - 1642249 - | hypothetical protein TERM 1952 1644758 - 1644741 - g 70 -4.9 -4.74706 | opp_overlap 1644744, overlap 1644742 TTTAATACCGAAAAA CTGGTTT GGTT AAACCAA CACTATATTAAGACG Shewana3_1418 1643838 - 1645247 + | glutamyl-tRNA synthetase TERM 1953 1646892 - 1646905 + T 100 -8.1 -5.76633 | opp_overlap 1646891 1646892 GTTGAGAACAATAAG CCACC ATTA GGTGG TTTTTTTGTATCTAA TERM 1954 1647285 - 1647301 + T 76 -10.1 -3.35798 | opp_overlap 1647285 AAAGCCAAATAAAAA GGCGACT CGA GGTCGCC TTGTACATCCAAGCT TERM 1955 1647301 - 1647285 - T 100 -9.4 -5.34381 | opp_overlap 1647285 AAAGCCAAATAAAAA GGCGAC TCGAG GTCGCC TTGTACATCCAAGCT Shewana3_1419 1649199 - 1647370 - | ABC transporter related Shewana3_1420 1649381 - 1651009 + | transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II Shewana3_1421 1651138 - 1651704 + | methylated-DNA--protein-cysteine methyltransferase Shewana3_1422 1651742 - 1653025 + | 4a-hydroxytetrahydrobiopterin dehydratase TERM 1956 1653250 - 1653272 + G 76 -7 -4.57837 | AGTTTTAAGCACCAC GGACTGCGTT ATG AATGCATTCC TTTTTCCCGCAATGT TERM 1957 1653448 - 1653458 + G 70 -8.2 -3.66874 | TACTTGATGGTGAAT GGCG CCG CGCC TTTGCATGCCGTTAG Shewana3_1423 1653091 - 1653561 + | Dual specificity protein phosphatase Shewana3_1424 1653596 - 1655230 + | phospholipase D/transphosphatidylase TERM 1958 1655588 - 1655603 + G 70 -3.2 -4.7497 | overlap 1655578 CATTACCGATTGTCA GCGGAT GATT ATCGGC TTTTTGGTGCGTGCG Shewana3_1425 1655322 - 1656221 + | response regulator receiver modulated CheW protein TERM 1959 1656982 - 1657010 + G 80 -9.5 -4.09739 | ATCGGTATTTTTGGT CTGGTGGCGGCAA CCT TTGCCGAAACCGG TTTTGCCGCCATTGC Shewana3_1426 1656394 - 1657620 + | serine/threonine transporter SstT TERM 1960 1657658 - 1657677 + F 100 -10 -5.61596 | opp_overlap 1657658 1657656 AAAAGTATCATAAGA GCAGTCAC CACG GTGGCTGC TTTTTTTATGGGAGT Shewana3_1427 1657697 - 1658221 + | hypothetical protein Shewana3_1428 1659653 - 1658274 - | oxidoreductase domain-containing protein Shewana3_1429 1659990 - 1660424 + | hypothetical protein TERM 1961 1660482 - 1660512 + T 100 -18.4 -4.62471 | opp_overlap 1660489 CAACCCGGTTTGCTT GATACGAGGTCGCT TAA GGCGACCTCGTGTC TTTTTAGCGGTTAAC Shewana3_1430 1661207 - 1660536 - | pseudouridine synthase Shewana3_1431 1661875 - 1661321 - | redoxin domain-containing protein TERM 1962 1661624 - 1661610 - G 73 -11.4 -2.87931 | GTGACGCGGCACACA GGGCAC CAA GTGCCC CAGAAATAGACTAAT Shewana3_1432 1662647 - 1662021 - | hypothetical protein Shewana3_1433 1662830 - 1663033 + | hypothetical protein Shewana3_1434 1663098 - 1664135 + | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase TERM 1963 1664156 - 1664184 + F 86 -5.9 -5.40072 | opp_overlap 1664156 1664158 1664159, overlap 1664159 GATTTTGTTTTAAAA TAGCCGCCCACAT TGA GTTTGGGCGGTAA TTTTTTTCAGCCAAA TERM 1964 1664159 - 1664181 + F 78 -9.8 -3.49966 | opp_overlap 1664159 1664158 1664156, overlap 1664156 TTTGTTTTAAAATAG CCGCCCACAT TGA GTTTGGGCGG TAATTTTTTTCAGCC TERM 1965 1664256 - 1664245 - f 73 -5.8 -4.41494 | TATTGTTAATCAAAA TGGC GCGT GCCA TTACAAATGTAGTCA tgt 1664297 - 1665421 + | queuine tRNA-ribosyltransferase Shewana3_1436 1665505 - 1665780 + | protein translocase subunit yajC TERM 1966 1666017 - 1666049 + G 74 -11.4 -3.14132 | opp_overlap 1666012 1666013 CTTGAAAAAGGTCAA TTGTTGGTTCGCGT ACAAA ACGCGGATCAACAG TTGCTGGCCAAGGAA secD 1665798 - 1667648 + | preprotein translocase subunit SecD TERM 1967 1668269 - 1668285 + G 72 -9.5 -3.37487 | opp_overlap 1668272, overlap 1668267 1668272 TGTGGGTTACTCACT CAACGAT ACC ATCGTTG TGTTTGACCGTATCC secF 1667661 - 1668608 + | preprotein translocase subunit SecF TERM 1968 1668628 - 1668642 + F 73 -10 -3.01712 | overlap 1668611 GCATTGAGACTCGAG GTCGTG TAT CACGAC TGTTCAAAAAAAAGC TERM 1969 1668642 - 1668686 + F 95 -13.1 -3.13919 | opp_overlap 1668656, overlap 1668656 GGTCGTGTATCACGA CTGTTCAAAAAAAAGCCACCT TAA AGGTGGCTTTTTTTTCGGTGG ATTTTGACCTTTCCG TERM 1970 1668656 - 1668672 + F 100 -12.3 -5.81412 | opp_overlap 1668656, overlap 1668642 ACTGTTCAAAAAAAA GCCACCT TAA AGGTGGC TTTTTTTTCGGTGGA TERM 1971 1668672 - 1668656 - f 100 -12.3 -5.75945 | opp_overlap 1668656 1668642 ACTGTTCAAAAAAAA GCCACCT TAA AGGTGGC TTTTTTTTCGGTGGA Shewana3_1439 1668865 - 1669182 + | hypothetical protein TERM 1972 1669321 - 1669300 - f 70 -10.1 -2.55818 | overlap 1669290 AACAAGGCTAAGGGA CGGGAGGTG ATTC CACCTCACG CACGCTTTGGCTCAT Shewana3_1440 1669452 - 1669811 + | rhodanese domain-containing protein Shewana3_1441 1669846 - 1670757 + | siroheme synthase TERM 1973 1670784 - 1670814 + F 100 -16.3 -5.71983 | GCAGTTTGTTTGAGC TGACGGCGAGTCT TAGGT AGACTCGCCGTTA TTTTTTTATCGTTAA Shewana3_1442 1670844 - 1671389 + | YaeQ family protein TERM 1974 1671421 - 1671387 - T 100 -13.9 -3.3062 | gap 1, opp_overlap 1671394 1671412, overlap 1671394 CTGAAAGATGACCAA TAAA-AAAGAGCCTGC AATT GCAGGCTCTTTGTTTA GACGAAGATTATTGG TERM 1975 1671413 - 1671394 - T 100 -13.6 -5.52023 | opp_overlap 1671394 1671412, overlap 1671387 ATGACCAATAAAAAA GAGCCTGC AATT GCAGGCTC TTTGTTTAGACGAAG TERM 1976 1671394 - 1671413 + T 100 -13.6 -4.41348 | opp_overlap 1671394 1671387, overlap 1671412 ATGACCAATAAAAAA GAGCCTGC AATT GCAGGCTC TTTGTTTAGACGAAG Shewana3_1443 1673859 - 1671430 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 1977 1673686 - 1673698 + g 70 -3.3 -4.81249 | TTCAGACATCAAGGC TGGCG CAT CGGCA TTTTTAAATTTAACG TERM 1978 1674019 - 1674009 - R 70 -5.4 -4.56597 | opp_overlap 1673998 GGTGGTTGGTAAAAA CAAC TGT GTTG ATAAGCGTTTAAAAT TERM 1979 1674404 - 1674417 + r 88 -9.5 -4.3129 | opp_overlap 1674404 CAAAATACAAAAAAA GCGCC AACG GGCGC TTTTCATCGTAAATC TERM 1980 1674417 - 1674404 - R 100 -9.5 -5.9362 | opp_overlap 1674404 CAAAATACAAAAAAA GCGCC AACG GGCGC TTTTCATCGTAAATC Shewana3_1444 1674842 - 1674444 - | rhodanese domain-containing protein Shewana3_1445 1675080 - 1674868 - | hypothetical protein Shewana3_1446 1678369 - 1675139 - | acriflavin resistance protein TERM 1981 1676326 - 1676360 + g 70 -2.9 -4.85599 | gap 2, overlap 1676327 1676330 ATTCTTCACGTACCG ACAGCGCAATGCTGTGA CTA TCAC-GC-TTGCGATGC TTTTTATCGACTAAG Shewana3_1447 1679417 - 1678404 - | RND family efflux transporter MFP subunit TERM 1982 1678518 - 1678538 + g 93 -9 -5.0538 | opp_overlap 1678508 AGAGACGCGCACCTG GGTGAGCA CAAAT TGCTCGCC TTTTTTCAAGTAGAC TERM 1983 1679028 - 1679072 + g 71 -7.7 -4.09551 | overlap 1679006 CTTGGCATTGGCGGT CGCTTCATCCATGGCGCCTTT TGA AATCGCGCCTTGGGGGAAGAG TTCTTTATAGCGTTT Shewana3_1448 1680352 - 1679600 - | hypothetical protein TERM 1984 1680294 - 1680276 - G 84 -4.5 -5.36441 | CCCGCACATAAAAAA CCGCC AAGCACGAG GGCGG GGAGTAGGTAACTCT TERM 1985 1680420 - 1680393 - R 78 -9.2 -3.60971 | opp_overlap 1680386 1680393 1680390 AGGTGAAGGCGCAAA GCTGAGCGCTTA ATAC TAAATGCTCAGC TGCTATTCAGGATTG TERM 1986 1680393 - 1680420 + r 70 -9.2 -2.74999 | opp_overlap 1680393, overlap 1680386 1680390 AGGTGAAGGCGCAAA GCTGAGCGCTTA ATAC TAAATGCTCAGC TGCTATTCAGGATTG Shewana3_1449 1680860 - 1680474 - | hypothetical protein TERM 1987 1680755 - 1680745 - G 70 -2.4 -4.91109 | TCGTTATGATAAAAA GCCG CGC CGCC CCAGTTTTCAATCGG TERM 1988 1680948 - 1680916 - R 95 -13 -3.19874 | gap 1, opp_overlap 1680925, overlap 1680918 1680925 AATAAATACGCAAGA TACAAAAAAGCCGCA TAAA TGCGGCTTTTTTG-A GGCGTAAACAGCTTA TERM 1989 1680947 - 1680918 - R 100 -18.1 -3.14671 | opp_overlap 1680925, overlap 1680916 1680925 TAAATACGCAAGATA CAAAAAAGCCGCA TAAA TGCGGCTTTTTTG AGGCGTAAACAGCTT TERM 1990 1680925 - 1680940 + r 100 -10.4 -5.02074 | opp_overlap 1680918 1680916 1680925 GCAAGATACAAAAAA GCCGCA TAAA TGCGGC TTTTTTGAGGCGTAA TERM 1991 1680940 - 1680925 - R 100 -10.4 -5.47431 | opp_overlap 1680925, overlap 1680918 1680916 GCAAGATACAAAAAA GCCGCA TAAA TGCGGC TTTTTTGAGGCGTAA Shewana3_1450 1682247 - 1680961 - | membrane protein involved in aromatic hydrocarbon degradation TERM 1992 1682566 - 1682533 - R 88 -9.7 -4.11897 | opp_overlap 1682534 1682535 1682542, overlap 1682527 1682523 1682534 1682542 ATAAATTTATACAAA TTGTAAAAAGCGTAC ACTT GTACGCTTTTTACGT TCTCAGAAATTATTT TERM 1993 1682565 - 1682534 - R 95 -13.2 -3.06054 | opp_overlap 1682534 1682535 1682542, overlap 1682527 1682523 1682533 1682542 TAAATTTATACAAAT TGTAAAAAGCGTAC ACTT GTACGCTTTTTACG TTCTCAGAAATTATT TERM 1994 1682534 - 1682565 + r 100 -15.4 -3.32066 | opp_overlap 1682527 1682523 1682533 1682534 1682542, overlap 1682535 1682542 TAAATTTATACAAAT TGTAAAAAGCGTAC ACTT GTACGCTTTTTACG TTCTCAGAAATTATT TERM 1995 1682535 - 1682564 + r 100 -16.7 -2.58758 | opp_overlap 1682527 1682523 1682534 1682533 1682542, overlap 1682534 1682542 AAATTTATACAAATT GTAAAAAGCGTAC ACTT GTACGCTTTTTAC GTTCTCAGAAATTAT TERM 1996 1682557 - 1682542 - R 100 -9 -4.72486 | opp_overlap 1682535 1682534 1682542, overlap 1682534 1682533 TACAAATTGTAAAAA GCGTAC ACTT GTACGC TTTTTACGTTCTCAG TERM 1997 1682542 - 1682557 + r 100 -9 -4.78149 | opp_overlap 1682542 1682534 1682533, overlap 1682535 1682534 TACAAATTGTAAAAA GCGTAC ACTT GTACGC TTTTTACGTTCTCAG Shewana3_1451 1684039 - 1682588 - | sodium/proline symporter Shewana3_1452 1684902 - 1684198 - | hypothetical protein TERM 1998 1684660 - 1684639 - G 71 -5.8 -4.31433 | overlap 1684648 GATCCCCACAATAAA GGCAATGG ACGCGG CCATGGCC ACCAAAAAGCCCGTT TERM 1999 1684684 - 1684669 - G 73 -5.4 -4.72986 | gap 1, opp_overlap 1684669, overlap 1684671 CATGGCCACCAAAAA GC-CCGT TTG ACGGCGC TGCTTATGGTGCTGC Shewana3_1453 1685458 - 1684895 - | RNA polymerase sigma factor Shewana3_1454 1687213 - 1685552 - | hypothetical protein Shewana3_1455 1689279 - 1687207 - | TPR repeat-containing protein TERM 2000 1687915 - 1687929 + g 74 -8.6 -4.0942 | overlap 1687908 ATTTTGCTGCGATTG TTGCTG GTT CAGCAA TTTCTCTGCTAACTC Shewana3_1456 1690295 - 1689279 - | von Willebrand factor, type A Shewana3_1457 1690882 - 1690289 - | hypothetical protein Shewana3_1458 1691914 - 1690946 - | hypothetical protein Shewana3_1459 1692943 - 1691987 - | ATPase fadI 1693217 - 1694527 + | 3-ketoacyl-CoA thiolase TERM 2001 1695945 - 1695932 - g 71 -6.7 -4.13767 | TTGCCCATGCGAAAA CGTCT CCTG AGACG ATTGCCACCACAGTG TERM 2002 1696208 - 1696178 - g 71 -7.7 -4.07687 | gap 1 ATGTCGGTGCTAAAA TCGCTCCAATCCTT GAAA AAGAACTGG-GCGA GCGCTTTAAAGCCCC fadJ 1694533 - 1696662 + | multifunctional fatty acid oxidation complex subunit alpha TERM 2003 1696683 - 1696714 + F 100 -14.7 -3.05816 | opp_overlap 1696690, overlap 1696690 CAAATAGAGGTTGAT TAAAAAAGCGGCA ATATGA TGCCGCTTTTTTA TTGCCTCAAGGCTAA TERM 2004 1696690 - 1696707 + F 100 -8.4 -5.4833 | opp_overlap 1696690, overlap 1696683 AGGTTGATTAAAAAA GCGGCA ATATGA TGCCGC TTTTTTATTGCCTCA TERM 2005 1696707 - 1696690 - f 100 -8.4 -5.14965 | opp_overlap 1696683 1696690 AGGTTGATTAAAAAA GCGGCA ATATGA TGCCGC TTTTTTATTGCCTCA Shewana3_1462 1696925 - 1697134 + | hypothetical protein TERM 2006 1697202 - 1697157 - T 100 -15.8 -3.5393 | gap 1, opp_overlap 1697173, overlap 1697158 1697173 ATGATTTGTCGTAAA TGTGGGCAATAAAAAAGGAGC ATAAA GCTCCTTTTTTATTGCCCT-A GGCTACGCGCTAGCA TERM 2007 1697202 - 1697158 - T 100 -17.4 -2.72144 | opp_overlap 1697173, overlap 1697157 1697173 TGATTTGTCGTAAAT GTGGGCAATAAAAAAGGAGC ATAAA GCTCCTTTTTTATTGCCCTA GGCTACGCGCTAGCA TERM 2008 1697187 - 1697173 - T 95 -7.1 -5.4505 | opp_overlap 1697173, overlap 1697157 1697158 GTGGGCAATAAAAAA GGAGC ATAAA GCTCC TTTTTTATTGCCCTA TERM 2009 1697173 - 1697187 + T 95 -7.1 -5.46657 | opp_overlap 1697157 1697158 1697173 GTGGGCAATAAAAAA GGAGC ATAAA GCTCC TTTTTTATTGCCCTA Shewana3_1463 1697996 - 1697409 - | hypothetical protein Shewana3_1464 1702404 - 1698103 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 2010 1699540 - 1699497 - G 89 -14 -3.6215 | opp_overlap 1699506, overlap 1699526 CTAATTCATCGTAAA TGGCGTCAATAGTCAGCTCC ATAT GGAAATGACTATTGTCACCA CGGCTGGCTTCGACT TERM 2011 1699561 - 1699572 + g 74 -7.2 -4.21471 | overlap 1699565 GGCTTCGACTTCGCT GGCC CAAC GGCC TTGTTGTTTTAACAT TERM 2012 1700294 - 1700319 + g 79 -9.1 -4.25056 | overlap 1700295 ATAATATTTACTTCT TTTTCAGGGGA TTTA TCTCCTGAAAG TTTATTCATAGCATA TERM 2013 1700295 - 1700318 + g 71 -10.4 -3.14552 | overlap 1700294 TAATATTTACTTCTT TTTCAGGGGA TTTA TCTCCTGAAA GTTTATTCATAGCAT TERM 2014 1702456 - 1702442 - R 70 -7.2 -3.89695 | TTTCCAGAAATAGAA GCTTTT GTC AAAAGC CAGAATGTAAAAAAT Shewana3_1465 1705447 - 1702658 - | peptidase M16 domain-containing protein TERM 2015 1705258 - 1705247 - G 73 -5.8 -4.56597 | TTCCGTGCCTAAAAA GAGC ATAT GCTC TAAAAAGTGCGCCAT Shewana3_1466 1705617 - 1706087 + | phosphohistidine phosphatase, SixA TERM 2016 1706129 - 1706102 - T 100 -14.2 -4.37092 | opp_overlap 1706102 1706106, overlap 1706106 ATTTCTTTGATAAAA CAAAGGGCTCAC ATTA GTGGGCCCTTTG TTTTTAGAGGATAAA TERM 2017 1706102 - 1706129 + T 100 -16.4 -4.58395 | opp_overlap 1706102 1706106, overlap 1706106 ATTTCTTTGATAAAA CAAAGGGCTCAC ATTA GTGGGCCCTTTG TTTTTAGAGGATAAA TERM 2018 1706106 - 1706125 + T 100 -11.4 -4.85782 | opp_overlap 1706102 1706106, overlap 1706102 CTTTGATAAAACAAA GGGCTCAC ATTA GTGGGCCC TTTGTTTTTAGAGGA TERM 2019 1706125 - 1706106 - T 100 -9.2 -4.77173 | opp_overlap 1706106 1706102, overlap 1706102 CTTTGATAAAACAAA GGGCTCAC ATTA GTGGGCCC TTTGTTTTTAGAGGA Shewana3_1467 1706683 - 1706153 - | hypothetical protein Shewana3_1468 1706764 - 1707708 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase TERM 2020 1707722 - 1707763 + F 86 -11.7 -3.30159 | gap 1, opp_overlap 1707716, overlap 1707723 AATAAATTAGGTTGA GTC-TTTTCCCGCTGCCAGT TAG GCTTGCAGCGGGAAAAAGAA TTGTCCAGCCATTGC TERM 2021 1707723 - 1707762 + F 100 -15.2 -2.57881 | gap 1, opp_overlap 1707716, overlap 1707722 ATAAATTAGGTTGAG TC-TTTTCCCGCTGCCAGT TAG GCTTGCAGCGGGAAAAAGA ATTGTCCAGCCATTG TERM 2022 1708786 - 1708774 - g 73 -9.1 -3.737 | opp_overlap 1708756 GAAGTGGTGACTAAA GGTCG TCA CGACC CCTGTGTCGGGATCC Shewana3_1469 1707823 - 1708917 + | chorismate synthase TERM 2023 1709000 - 1709036 + G 85 -7.3 -4.86954 | gap 1, opp_overlap 1708997 1709009, overlap 1709002 1709003 TAATGCCAACAATCT CTAGCACA-AGCCAGC AGTTAC GCTGGCTATGTGCCTG TTATTTTTTCTTCTT TERM 2024 1709002 - 1709034 + G 74 -8.5 -4.00001 | gap 1, opp_overlap 1708997 1709009, overlap 1709000 1709003 ATGCCAACAATCTCT AGCACA-AGCCAGC AGTTAC GCTGGCTATGTGCC TGTTATTTTTTCTTC TERM 2025 1709003 - 1709033 + G 76 -12 -2.9756 | gap 1, opp_overlap 1708997 1709009, overlap 1709002 1709000 TGCCAACAATCTCTA GCACA-AGCCAGC AGTTAC GCTGGCTATGTGC CTGTTATTTTTTCTT Shewana3_1470 1708987 - 1710156 + | major facilitator transporter TERM 2026 1710895 - 1710872 - g 79 -8.8 -4.17316 | opp_overlap 1710888 ATGGGTGGAAAAGAA GTCGATGAGC TAGT GCTCGCCGAC ATTGCCGCCGATGTT Shewana3_1471 1710221 - 1711363 + | ATP-NAD/AcoX kinase Shewana3_1472 1711419 - 1711700 + | hypothetical protein Shewana3_1473 1711704 - 1712312 + | tRNA/rRNA methyltransferase (SpoU) TERM 2027 1712368 - 1712348 - T 100 -12.7 -5.56264 | opp_overlap 1712348 TCGAAATACAAAAAA GGATTAAGC ACT GCTTAATCC TTTTTTGTTTTGGGC TERM 2028 1712348 - 1712368 + T 100 -12.7 -5.79595 | opp_overlap 1712348 TCGAAATACAAAAAA GGATTAAGC ACT GCTTAATCC TTTTTTGTTTTGGGC Shewana3_1474 1714438 - 1712516 - | FAD dependent oxidoreductase Shewana3_1475 1714724 - 1715959 + | 3-oxoacyl-[acyl-carrier-protein] synthase I TERM 2029 1715974 - 1716003 + F 100 -15.3 -3.07994 | opp_overlap 1715981, overlap 1715981 AGCCATTATTTTCGT TAAAAAAGGAAGC CTAG GCTTCCTTTTTTA TTGGCTGAAATTGAG TERM 2030 1715981 - 1715996 + F 100 -9 -5.4833 | opp_overlap 1715981, overlap 1715974 ATTTTCGTTAAAAAA GGAAGC CTAG GCTTCC TTTTTTATTGGCTGA TERM 2031 1715996 - 1715981 - f 100 -9 -5.00884 | opp_overlap 1715981 1715974 ATTTTCGTTAAAAAA GGAAGC CTAG GCTTCC TTTTTTATTGGCTGA Shewana3_1476 1716390 - 1717520 + | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region TERM 2032 1718198 - 1718166 - g 76 -6.3 -4.61162 | opp_overlap 1718172, overlap 1718167 1718172 1718194 ACACCAAAGAAGAAA TGAAAATGGTCTGGG AAA CCCAGAAGATTTTCG GTGATGACGAAATCC TERM 2033 1718197 - 1718167 - g 72 -9.8 -3.35071 | opp_overlap 1718172, overlap 1718166 1718172 1718194 CACCAAAGAAGAAAT GAAAATGGTCTGGG AAA CCCAGAAGATTTTC GGTGATGACGAAATC Shewana3_1477 1717523 - 1718539 + | aspartate semialdehyde dehydrogenase TERM 2034 1718572 - 1718588 + F 100 -12.3 -6.09196 | opp_overlap 1718572 ATGCCCAGTGAAAAA GCCTGCT GCC AGCAGGC TTTTTTTGTTTTACA TERM 2035 1718588 - 1718572 - f 100 -12.3 -4.66163 | opp_overlap 1718572 ATGCCCAGTGAAAAA GCCTGCT GCC AGCAGGC TTTTTTTGTTTTACA TERM 2036 1720068 - 1720057 - g 91 -7.2 -5.06414 | opp_overlap 1720056 TTTGCCGAAGAAAAA GCCG CATC CGGC AATATTCTGGAGGAA Shewana3_1478 1718719 - 1722066 + | hypothetical protein TERM 2037 1722094 - 1722110 + F 100 -10.8 -5.94713 | opp_overlap 1722094 TTGATTTCACACTAA CGGCGC GCAGA GCGCCG TTTTTTTTGTGGGCT TERM 2038 1722110 - 1722094 - f 81 -10.8 -3.27022 | opp_overlap 1722094 TTGATTTCACACTAA CGGCGC GCAGA GCGCCG TTTTTTTTGTGGGCT Shewana3_1479 1722170 - 1722955 + | tRNA pseudouridine synthase A Shewana3_1480 1723007 - 1724305 + | FolC bifunctional protein TERM 2039 1724344 - 1724358 + G 85 -7.8 -4.83615 | GCACTGTGGTGCTGG TCGCCC TCG GGGTGA TTTTTCTGCCGGATA Shewana3_1481 1724298 - 1725122 + | sporulation domain-containing protein TERM 2040 1725411 - 1725434 + G 71 -5.4 -4.52873 | gap 1, overlap 1725414 TGAACGATGAGGTGC TACGCAATGGG GTC TCCATTGC-TA TTCTTTTTATCACCA TERM 2041 1725414 - 1725432 + G 78 -9.6 -3.86816 | overlap 1725411 ACGATGAGGTGCTAC GCAATGGG GTC TCCATTGC TATTCTTTTTATCAC TERM 2042 1725553 - 1725583 + G 100 -10.4 -5.28778 | overlap 1725555 1725558 GTGTTTCGGTGCCAT TAGGGGCGCGCTGA TCG TCAGTGCGCTGCTG TTTTTTATGGATGCT TERM 2043 1725555 - 1725581 + G 88 -10.8 -4.2748 | overlap 1725553 1725558 GTTTCGGTGCCATTA GGGGCGCGCTGA TCG TCAGTGCGCTGC TGTTTTTTATGGATG TERM 2044 1725558 - 1725578 + G 81 -13.3 -3.12257 | overlap 1725555 1725553 TCGGTGCCATTAGGG GCGCGCTGA TCG TCAGTGCGC TGCTGTTTTTTATGG Shewana3_1482 1725233 - 1725721 + | colicin V production protein TERM 2045 1725797 - 1725763 - f 76 -9.2 -3.4759 | overlap 1725764 ATGGAGGATAAGTAA GGTTGAGTCCGAAGCC TAA GGCCACTGACTCAACA CTGAGATGAAGCACT TERM 2046 1725796 - 1725764 - f 88 -12.7 -2.68072 | overlap 1725763 TGGAGGATAAGTAAG GTTGAGTCCGAAGCC TAA GGCCACTGACTCAAC ACTGAGATGAAGCAC TERM 2047 1726773 - 1726763 - g 73 -5.4 -4.71318 | opp_overlap 1726763 AAGATCAAAAAAGAA TGGT ACG ACCA TGATATCGACGTGGT Shewana3_1483 1725902 - 1727416 + | amidophosphoribosyltransferase TERM 2048 1727533 - 1727487 - T 100 -16.3 -4.16943 | gap 1, opp_overlap 1727501, overlap 1727488 1727491 1727501 GGGCACACTTTAAAA TGCACAATAAAAAAGCCAGTGA TAAG TCACTGGCTTTTTTATTGGG-A GCTGCAATCCTTAGG TERM 2049 1727533 - 1727488 - T 100 -17.9 -3.09844 | opp_overlap 1727501, overlap 1727487 1727491 1727501 GGCACACTTTAAAAT GCACAATAAAAAAGCCAGTGA TAAG TCACTGGCTTTTTTATTGGGA GCTGCAATCCTTAGG TERM 2050 1727530 - 1727491 - T 100 -22.6 -2.75845 | opp_overlap 1727501, overlap 1727487 1727488 1727501 ACACTTTAAAATGCA CAATAAAAAAGCCAGTGA TAAG TCACTGGCTTTTTTATTG GGAGCTGCAATCCTT TERM 2051 1727501 - 1727520 + T 100 -12.2 -5.4505 | opp_overlap 1727501 1727491 1727487 1727488 ATGCACAATAAAAAA GCCAGTGA TAAG TCACTGGC TTTTTTATTGGGAGC TERM 2052 1727520 - 1727501 - T 100 -12.2 -5.56673 | opp_overlap 1727501, overlap 1727491 1727487 1727488 ATGCACAATAAAAAA GCCAGTGA TAAG TCACTGGC TTTTTTATTGGGAGC Shewana3_1484 1729028 - 1727544 - | amino acid carrier protein TERM 2053 1728656 - 1728645 - G 74 -7.2 -4.27316 | overlap 1728646 TTTTTCAATGTAAAA GGCG GGGC CGCC GCGATACTCTCCATT Shewana3_1485 1729680 - 1729393 - | hypothetical protein TERM 2054 1729724 - 1729750 + H 76 -9.6 -3.56594 | GCAAGGGATTTTAGT TTTAGATGAGAA TTA TTCTCAACTAAA TTTACACAGCTTTAG TERM 2055 1729914 - 1729904 - g 71 -5.4 -4.59109 | overlap 1729905 TATATTGCTGAAAAA CCAA GCC TTGG GCGTGCAATTGCCGA Shewana3_1486 1729880 - 1731994 + | DNA topoisomerase III TERM 2056 1732104 - 1732070 - f 93 -12.3 -3.12351 | gap 1, opp_overlap 1732069 1732070, overlap 1732073 TTCCGCGATATTTAA TTACCGCCAATCACGA TATT TCGTGATTGGCGG-AT CCACTTCTAAAAAAC TERM 2057 1732102 - 1732073 - f 100 -20.9 -2.77182 | opp_overlap 1732070 1732069, overlap 1732070 CGCGATATTTAATTA CCGCCAATCACGA TATT TCGTGATTGGCGG ATCCACTTCTAAAAA Shewana3_1487 1732244 - 1733413 + | porin TERM 2058 1733475 - 1733449 - T 100 -13.8 -4.24562 | opp_overlap 1733454 AAAAAAGCACATAAA GCAAAGGCCACA TAT TGTGGCCTTTTC CATAACTATCCATTT TERM 2059 1733454 - 1733470 + T 100 -12.3 -4.20531 | opp_overlap 1733449 AGCACATAAAGCAAA GGCCACA TAT TGTGGCC TTTTCCATAACTATC Shewana3_1488 1735029 - 1733503 - | sigma-54 dependent trancsriptional regulator TERM 2060 1734220 - 1734237 + g 73 -5.5 -4.72272 | AACTTTGCGCGAATC GGCGC CGGTAAAT GCGCC TTTTTCATAACCAAA TERM 2061 1734509 - 1734525 + g 73 -8.7 -3.68619 | CTCACGTTTTGCTTC GAGAGCG CTT CGTTCTC TTTGAGTAAGTTGCG TERM 2062 1736232 - 1736270 + G 76 -7.5 -4.32034 | gap 1, opp_overlap 1736248 1736249 AGACGCCATCATGAC CCGACGGGATGAGAAAGG ACAG CCTGTCT-ATCCCATTGG TTTTACTAATGCTGC Shewana3_1489 1735195 - 1736748 + | flavocytochrome c Shewana3_1490 1736785 - 1738422 + | phenylalanine/histidine ammonia-lyase Shewana3_1491 1738464 - 1738847 + | tetraheme cytochrome c TERM 2063 1738900 - 1738922 + T 100 -15 -5.40072 | TGACTATCTTTGTCA TGCACTCAAC CCG GTTGAGTGCA TTTTTTTAGGCAAAA TERM 2064 1738964 - 1738942 - T 100 -7 -5.81412 | opp_overlap 1738944 TTTAGGCAAAAAAAA GAGTAAGCCA ATA CGGATTACTC TTACGGAAAATTGGT Shewana3_1492 1740358 - 1739069 - | prolyl aminopeptidase 2 TERM 2065 1740618 - 1740605 - g 70 -2.3 -5.00616 | opp_overlap 1740605 1740615 1740617 TCTGGTGTGAAAAAA CGAAG CGTG CTGCG GTTGTCGATCCGGGA Shewana3_1493 1740538 - 1741182 + | beta-lactamase domain-containing protein TERM 2066 1741194 - 1741227 + F 88 -12.5 -2.64651 | CTAGGTAGACGCTTC TTCATCGCGACGCAT GCCC ATGCGTCGCGAGCAA TCCATTTAGCCCATT Shewana3_1494 1741408 - 1742421 + | hypothetical protein Shewana3_1495 1742421 - 1743125 + | hypothetical protein Shewana3_1496 1743129 - 1743626 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein Shewana3_1497 1743628 - 1745874 + | aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead TERM 2067 1745899 - 1745928 + F 91 -7.3 -5.40072 | gap 1, opp_overlap 1745906, overlap 1745899 1745906 CGACACCTGAGTGAG C-AAAAAAGCGCCT AAC AAGCGCTTTTTTCG TTTTTTTACCACAAA TERM 2068 1745899 - 1745927 + F 70 -7.5 -3.83561 | opp_overlap 1745906, overlap 1745899 1745906 CGACACCTGAGTGAG CAAAAAAGCGCCT AAC AAGCGCTTTTTTC GTTTTTTTACCACAA TERM 2069 1745906 - 1745920 + F 95 -5.6 -5.62552 | opp_overlap 1745906, overlap 1745899 1745899 TGAGTGAGCAAAAAA GCGCCT AAC AAGCGC TTTTTTCGTTTTTTT TERM 2070 1745920 - 1745906 - f 95 -7.8 -5.1675 | opp_overlap 1745906 1745899 1745899 TGAGTGAGCAAAAAA GCGCCT AAC AAGCGC TTTTTTCGTTTTTTT TERM 2071 1745961 - 1745948 - f 73 -5.3 -4.59342 | opp_overlap 1745948 TTTACCACAAATAAA TTGCT TGTT AGCAA ATTTACGGGCATTAA Shewana3_1498 1746245 - 1746736 + | hypothetical protein TERM 2072 1747548 - 1747564 + G 82 -7.3 -4.63184 | opp_overlap 1747548 GCAGTGGCGAGTTAA TTGGTGC CCA GCATCAA TTTTTAGACTCAGTT Shewana3_1499 1746851 - 1748305 + | methyl-accepting chemotaxis sensory transducer TERM 2073 1748430 - 1748404 - f 81 -9.4 -3.86311 | opp_overlap 1748404 ATATCCAAATCCAAA TGGCGGTTGCAT CTA ATGCAGTCGCCA TTTTTTATGTCATTT TERM 2074 1748404 - 1748430 + F 100 -13.8 -5.43487 | opp_overlap 1748404 ATATCCAAATCCAAA TGGCGGTTGCAT CTA ATGCAGTCGCCA TTTTTTATGTCATTT Shewana3_1500 1748713 - 1749120 + | hypothetical protein Shewana3_1501 1749333 - 1749875 + | GCN5-related N-acetyltransferase Shewana3_1502 1750004 - 1750435 + | hypothetical protein TERM 2075 1750622 - 1750639 + T 100 -11.3 -5.38951 | opp_overlap 1750622 TCTATAACAAAAAAA CATCGGC CTAG GCCGATG TTTTTTATATCGATT TERM 2076 1750639 - 1750622 - T 100 -11.3 -5.88565 | opp_overlap 1750622 TCTATAACAAAAAAA CATCGGC CTAG GCCGATG TTTTTTATATCGATT Shewana3_1503 1751487 - 1750675 - | exonuclease III Shewana3_1504 1751786 - 1751487 - | YciI-like protein Shewana3_1505 1752331 - 1751786 - | intracellular septation protein A Shewana3_1506 1753526 - 1752492 - | ferric iron reductase TERM 2077 1753337 - 1753321 - G 72 -3.5 -4.82901 | opp_overlap 1753321, overlap 1753322 1753323 TGCTGTGCATAAAAA GGGGCGC GCA GCGCCAG TCGTTGATTAAACGC TERM 2078 1753556 - 1753579 + r 100 -13.2 -4.45544 | opp_overlap 1753556, overlap 1753577 CTTGAATTGATTAAA CTGCGGTGAG TTTA TTCACCGCAG TTTTCATTGATGAAC TERM 2079 1753579 - 1753556 - R 100 -12.5 -3.794 | opp_overlap 1753556 1753577 CTTGAATTGATTAAA CTGCGGTGA GTTTAT TCACCGCAG TTTTCATTGATGAAC Shewana3_1507 1755828 - 1753615 - | TonB-dependent siderophore receptor Shewana3_1508 1757808 - 1755913 - | IucA/IucC family protein TERM 2080 1756195 - 1756183 - G 79 -9.1 -4.15106 | CACCAACTCCCAAAA CAGCG CTT CGCTG ACCTCGGTTTGCTTA TERM 2081 1756318 - 1756336 + g 77 -12.4 -3.09635 | overlap 1756302 GCGCTGTACTTCTTG CGGCAGTG GCT CGCTGCCG TTGAGTACTGCGACT TERM 2082 1756967 - 1756979 + g 70 -9.1 -3.53012 | opp_overlap 1756966 1756965 CCGAGATAAATAATG TCGCC GCC GGCGA TTTCGCCAGCAAAAG TERM 2083 1756982 - 1757003 + g 76 -4.3 -5.00884 | overlap 1756984 TCGCCGCCGGCGATT TCGCCAGCA AAAG TGCGGGCAA TTTTTTCGCGCCACT Shewana3_1509 1758470 - 1757805 - | siderophore biosynthesis protein, putative Shewana3_1510 1759960 - 1758470 - | siderophore biosynthesis protein TERM 2084 1759129 - 1759144 + g 74 -4 -4.99134 | gap 1, overlap 1759131 TTAACTCGGCATTGA TCCC-CT TGT AGAGGGA TTTTTGATTTGCAAT TERM 2085 1760511 - 1760494 - R 100 -8.5 -5.00027 | opp_overlap 1760494 AGGAAAAACAGAAAA GCCATTT TAGA AAATGGC TTTAACGGCATTAAA TERM 2086 1760494 - 1760511 + r 71 -8.5 -3.55622 | opp_overlap 1760494 AGGAAAAACAGAAAA GCCATTT TAGA AAATGGC TTTAACGGCATTAAA Shewana3_1511 1760821 - 1760540 - | hypothetical protein Shewana3_1512 1761446 - 1761003 - | glycerate kinase TERM 2087 1761471 - 1761454 - R 71 -4.1 -4.81212 | gap 1, overlap 1761455 1761456 TTTACCATAACAAAA CGGCCGAT GTT ACCGGC-G CTATATTAACATCTC TERM 2088 1761606 - 1761629 + r 100 -15.4 -3.05384 | opp_overlap 1761606 AGGCGAGAAAGAAAA GGGCCAAATC CGAT GATTTGGCCC TTCAGTGGCGAAACA TERM 2089 1761629 - 1761606 - R 100 -15.4 -4.99645 | opp_overlap 1761606 AGGCGAGAAAGAAAA GGGCCAAATC CGAT GATTTGGCCC TTCAGTGGCGAAACA Shewana3_1513 1763608 - 1761659 - | TonB-dependent receptor TERM 2090 1761814 - 1761835 + g 71 -5.7 -4.3898 | opp_overlap 1761813 1761814 1761818 AGCTGGTGCCAAAAT CGAAGCGGC TATA GCCACTGCG TTTTATCGCGCTGCT Shewana3_1514 1763877 - 1764932 + | putative esterase TERM 2091 1765012 - 1764981 - T 100 -11.6 -4.06687 | AGCGCTTAGAAACAA CTGAGCACAGGTGC AAAC ACGCCTATGCTCAG ATGGTCAGTAGTTTA trpA 1765865 - 1765029 - | tryptophan synthase subunit alpha Shewana3_1516 1767061 - 1765871 - | tryptophan synthase subunit beta TERM 2092 1767089 - 1767119 + r 72 -7.6 -3.81339 | overlap 1767090 ATCCTATTCATTTGT TTCGATGGCGGT TTAGGTT AACGCCATCGAG TTTCAATTCTGGCTA TERM 2093 1767136 - 1767152 + r 100 -12.3 -4.83615 | TTCAATTCTGGCTAG CCTGTGC TTT GCACAGG TTTTTATAAAAGCTG Shewana3_1517 1768651 - 1767170 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase TERM 2094 1767741 - 1767760 + g 73 -10.6 -3.19175 | opp_overlap 1767727 1767739 AGCCCTGCATACACG GCGCCGGC AGTG GCCGCCGC TTGAATATCTTCAAG Shewana3_1518 1769700 - 1768657 - | anthranilate phosphoribosyltransferase Shewana3_1519 1770308 - 1769700 - | anthranilate synthase component II Shewana3_1520 1772010 - 1770319 - | anthranilate synthase component I TERM 2095 1770563 - 1770589 + g 71 -5.6 -4.5442 | opp_overlap 1770557, overlap 1770565 1770566 TTGAGGTAACCCACA GCGCCGCCGTAG CTG CCGCGGCGGGTC TTTTCTGCTTGACGC TERM 2096 1770566 - 1770586 + g 70 -10.3 -2.92215 | opp_overlap 1770557, overlap 1770565 1770563 AGGTAACCCACAGCG CCGCCGTAG CTG CCGCGGCGG GTCTTTTCTGCTTGA TERM 2097 1770772 - 1770782 + g 70 -8.2 -3.68351 | opp_overlap 1770761 TAACTCGGCCACTTT GCGG CTG CCGC TTTGGCTGATACGGG TERM 2098 1770902 - 1770914 + g 71 -6.9 -4.12942 | overlap 1770903 1770906 1770911 AGGTCGAAATCGATC TCGCC GCT GGCGG TTTTGCCGCGTTTAC TERM 2099 1772059 - 1772098 + H 100 -21 -3.80094 | opp_overlap 1772070, overlap 1772060 1772070 CAGACATTTTTCGCA CCAACAAAAAAGCCCGCA TTTC TGCGGGCTTTTTTGTTGA TTCTGTTACTTTCAA TERM 2100 1772060 - 1772097 + H 100 -24.5 -2.87334 | opp_overlap 1772070, overlap 1772059 1772070 AGACATTTTTCGCAC CAACAAAAAAGCCCGCA TTTC TGCGGGCTTTTTTGTTG ATTCTGTTACTTTCA TERM 2101 1772070 - 1772087 + H 100 -12.7 -5.57396 | opp_overlap 1772070, overlap 1772060 1772059 CGCACCAACAAAAAA GCCCGCA TTTC TGCGGGC TTTTTTGTTGATTCT TERM 2102 1772087 - 1772070 - H 100 -12.7 -5.5112 | opp_overlap 1772070 1772060 1772059 CGCACCAACAAAAAA GCCCGCA TTTC TGCGGGC TTTTTTGTTGATTCT Shewana3_1521 1772380 - 1773240 + | phosphotransferase domain-containing protein Shewana3_1522 1773237 - 1773857 + | translation factor SUA5 Shewana3_1523 1774047 - 1774835 + | condensin subunit ScpA Shewana3_1524 1774839 - 1775435 + | condensin subunit ScpB Shewana3_1525 1775428 - 1776303 + | ribosomal large subunit pseudouridine synthase B TERM 2103 1776339 - 1776352 + F 100 -9.5 -5.42514 | opp_overlap 1776339 GTCTCTCAGTAAAAA GGCCG CATG CGGCC TTTTTTGCTTTCTGC TERM 2104 1776352 - 1776339 - f 100 -9.5 -4.72272 | opp_overlap 1776339 GTCTCTCAGTAAAAA GGCCG CATG CGGCC TTTTTTGCTTTCTGC Shewana3_1526 1776417 - 1777379 + | hypothetical protein TERM 2105 1777387 - 1777411 + F 100 -13 -3.40403 | opp_overlap 1777387 1777391, overlap 1777391 GTGATTGAGCAAAAA TAAAGGGAGC GTAGG GCTCCCTTTA TTGTCATCCCAAAAC TERM 2106 1777411 - 1777387 - f 100 -13 -4.7497 | opp_overlap 1777387 1777391, overlap 1777391 GTGATTGAGCAAAAA TAAAGGGAGC GTAGG GCTCCCTTTA TTGTCATCCCAAAAC TERM 2107 1777391 - 1777407 + F 88 -9.4 -4.35483 | opp_overlap 1777387 1777391, overlap 1777387 TTGAGCAAAAATAAA GGGAGC GTAGG GCTCCC TTTATTGTCATCCCA TERM 2108 1777407 - 1777391 - f 100 -9.4 -4.91852 | opp_overlap 1777391 1777387, overlap 1777387 TTGAGCAAAAATAAA GGGAGC GTAGG GCTCCC TTTATTGTCATCCCA TERM 2109 1777423 - 1777447 + F 78 -9.9 -3.42056 | opp_overlap 1777426, overlap 1777426 TTTATTGTCATCCCA AAACCACCGCC TCT GGCGGTGGTGA TTGTCCCTTAAGGCT TERM 2110 1777426 - 1777444 + F 100 -16 -2.86539 | opp_overlap 1777426, overlap 1777423 ATTGTCATCCCAAAA CCACCGCC TCT GGCGGTGG TGATTGTCCCTTAAG TERM 2111 1777444 - 1777426 - f 100 -16 -4.13945 | opp_overlap 1777426 1777423 ATTGTCATCCCAAAA CCACCGCC TCT GGCGGTGG TGATTGTCCCTTAAG Shewana3_1527 1777531 - 1777968 + | transposase IS200-family protein TERM 2112 1777998 - 1777980 - T 80 -8.8 -3.91084 | overlap 1777982 GTAGGTGTAAGGAAA TAGCCCCT TCC AGGGGCAA ATCAAAGCCGCCTTC TERM 2113 1777996 - 1777982 - T 89 -11.4 -3.54414 | overlap 1777980 AGGTGTAAGGAAATA GCCCCT TCC AGGGGC AAATCAAAGCCGCCT TERM 2114 1778002 - 1778028 + T 88 -9.4 -4.31065 | opp_overlap 1778005 1778006, overlap 1778005 1778006 TTCCAGGGGCAAATC AAAGCCGCCTTC TAA GAAGGCGGATTC TTTACTTTTATCTAT TERM 2115 1778005 - 1778025 + T 93 -11.1 -4.23876 | opp_overlap 1778005 1778006, overlap 1778002 1778006 CAGGGGCAAATCAAA GCCGCCTTC TAA GAAGGCGGA TTCTTTACTTTTATC TERM 2116 1778025 - 1778005 - T 90 -11.1 -4.06502 | opp_overlap 1778005 1778002 1778006, overlap 1778006 CAGGGGCAAATCAAA GCCGCCTTC TAA GAAGGCGGA TTCTTTACTTTTATC TERM 2117 1778006 - 1778024 + T 100 -14.6 -3.12699 | opp_overlap 1778005 1778006, overlap 1778005 1778002 AGGGGCAAATCAAAG CCGCCTTC TAA GAAGGCGG ATTCTTTACTTTTAT TERM 2118 1778024 - 1778006 - T 100 -14.6 -3.03419 | opp_overlap 1778006 1778005 1778002, overlap 1778005 AGGGGCAAATCAAAG CCGCCTTC TAA GAAGGCGG ATTCTTTACTTTTAT Shewana3_1528 1778803 - 1778066 - | short chain dehydrogenase TERM 2119 1778201 - 1778215 + g 70 -11.4 -2.58539 | overlap 1778198 TTTAGCACGCATTTC GGTGCG AGT CGCACC TGGATTAATGCTGTT TERM 2120 1778699 - 1778683 - G 74 -6.5 -4.2828 | opp_overlap 1778666 1778684, overlap 1778684 TTTTACCGAGTAAAA TCACGGT AGC ACCGTGT TTGGCAAATTCAATG TERM 2121 1778684 - 1778698 + g 74 -10 -3.5774 | opp_overlap 1778683 1778684, overlap 1778666 TTTACCGAGTAAAAT CACGGT AGC ACCGTG TTTGGCAAATTCAAT Shewana3_1529 1779065 - 1781551 + | hypothetical protein TERM 2122 1781588 - 1781573 - f 100 -10.4 -4.7416 | opp_overlap 1781573 GTAAAATCCTAAAAA CCCAGC CTTT GCTGGG TTTTTTTATGGCGCT TERM 2123 1781573 - 1781588 + F 100 -10.4 -5.61596 | opp_overlap 1781573 GTAAAATCCTAAAAA CCCAGC CTTT GCTGGG TTTTTTTATGGCGCT TERM 2124 1781895 - 1781883 - g 70 -3.3 -4.75404 | AAAGCCTACGAAAAA CAGCT GAA AGCAG ACGAAAAAGCAAAGG Shewana3_1530 1781664 - 1782680 + | putative periplasmic protease TERM 2125 1782705 - 1782736 + F 100 -12.4 -4.38712 | opp_overlap 1782711, overlap 1782711 CTAACTCAATCCTGA TGAAAACGCCTGCG AAAA TGCAGGCGTTTTTG TTTTGTCCGGGTGCG TERM 2126 1782711 - 1782730 + F 100 -11.4 -5.54907 | opp_overlap 1782711, overlap 1782705 CAATCCTGATGAAAA CGCCTGCG AAAA TGCAGGCG TTTTTGTTTTGTCCG TERM 2127 1782730 - 1782711 - f 100 -10.7 -4.2679 | opp_overlap 1782705 1782711 CAATCCTGATGAAAA CGCCTGC GAAAAT GCAGGCG TTTTTGTTTTGTCCG Shewana3_1531 1782874 - 1783905 + | AraC family transcriptional regulator TERM 2128 1783986 - 1784014 + T 78 -10.3 -3.28637 | opp_overlap 1783993 ATTTGGCGGTTGGTT GGAGATACAGTCA TAT TGCCTGCATCTCC TTCCTAGTGTTGATA Shewana3_1532 1785230 - 1784046 - | hypothetical protein TERM 2129 1785286 - 1785267 - R 78 -9.3 -3.61398 | opp_overlap 1785267 1785270, overlap 1785270 TGTTGCTTGCAATAA GAAGGCC TAAGTC GGCCTTC TCTGTCAGGGTGTTG TERM 2130 1785267 - 1785286 + r 70 -9.3 -2.89668 | opp_overlap 1785267 1785270, overlap 1785270 TGTTGCTTGCAATAA GAAGGCC TAAGTC GGCCTTC TCTGTCAGGGTGTTG TERM 2131 1785325 - 1785354 + r 79 -10.7 -3.04144 | opp_overlap 1785325 TGGAATGGTAAGCAA GTGGGTGATTGCA AGCC TGCTTTCACCCAC TGTTACCGATAACGC TERM 2132 1785354 - 1785325 - R 81 -10.7 -3.37612 | opp_overlap 1785325 TGGAATGGTAAGCAA GTGGGTGATTGCA AGCC TGCTTTCACCCAC TGTTACCGATAACGC Shewana3_1533 1788104 - 1785369 - | hypothetical protein TERM 2133 1786338 - 1786350 + g 73 -5.5 -4.62783 | ACCGCCCGAATTAGG CCCTG TCG TAGGG TTTTTGGCATCGCTG TERM 2134 1789661 - 1789679 + G 70 -8.2 -3.80733 | overlap 1789658 CTTAATATTGAGTGC CAGTGGTA TTT TACTACTG TTATTATCCCATGGC Shewana3_1534 1788543 - 1791095 + | hypothetical protein TERM 2135 1791253 - 1791265 + G 83 -3.3 -5.47218 | opp_overlap 1791253 1791254, overlap 1791254 TCATCCCATACCAAA CCACC GCT GGTGA TTTTTTTGAGTGGCG Shewana3_1535 1791103 - 1791834 + | Type IV secretory pathway VirJ component-like protein TERM 2136 1791895 - 1791880 - T 100 -11.8 -5.34632 | opp_overlap 1791880 AATAAAACATAAAAA GGGCGC AGAT GCGCCC TTTGTTTTAGGTTGT TERM 2137 1791880 - 1791895 + T 100 -11.8 -4.73092 | opp_overlap 1791880 AATAAAACATAAAAA GGGCGC AGAT GCGCCC TTTGTTTTAGGTTGT Shewana3_1536 1792992 - 1791925 - | hypothetical protein TERM 2138 1792051 - 1792040 - G 76 -7.2 -4.42653 | ACGTTATTCATAAAA CGGC CATA GCCG GAGTCATCACAGTCC Shewana3_1537 1793736 - 1793137 - | GDSL family lipase TERM 2139 1793379 - 1793389 + g 73 -5.4 -4.66609 | CGGTCAGTAGCACTT TAGC ACC GCTA TTTTTAGCTAGGGTA Shewana3_1538 1793789 - 1794538 + | ABC transporter related TERM 2140 1795049 - 1795059 + G 79 -8.2 -4.30978 | overlap 1795042 GAAATCAGCCGCTTA CCCG ATG CGGG TTTTAATCCATTCGC TERM 2141 1795191 - 1795179 - g 71 -6.9 -4.15044 | opp_overlap 1795178 1795179 TTGTGGGTGAAGAAA GCGCC TTA AGCGC CTTTGAGAATAGCGT TERM 2142 1795803 - 1795823 + G 76 -8.3 -4.26189 | opp_overlap 1795787, overlap 1795778 TTGCGGCTGTGCTGC TACTGGGCG TAT TGCTCAGTA TTTTAGGCTTTGTGA Shewana3_1539 1794542 - 1797043 + | hypothetical protein Shewana3_1540 1797324 - 1797986 + | signal peptidase I TERM 2143 1798018 - 1798049 + T 100 -13.9 -3.78775 | opp_overlap 1798018 1798024, overlap 1798024 ACTCTTCACGAGATA TAAAAATGGCGCC CTTATC GGCGCCATTTTTG TTTAATGATAAAGCG TERM 2144 1798049 - 1798018 - T 83 -11.7 -2.94218 | opp_overlap 1798018 1798024, overlap 1798024 ACTCTTCACGAGATA TAAAAATGGCGCC CTTATC GGCGCCATTTTTG TTTAATGATAAAGCG TERM 2145 1798043 - 1798024 - T 100 -10.7 -5.05601 | opp_overlap 1798018 1798024, overlap 1798018 CACGAGATATAAAAA TGGCGCC CTTATC GGCGCCA TTTTTGTTTAATGAT TERM 2146 1798024 - 1798043 + T 100 -10.7 -5.34309 | opp_overlap 1798024 1798018, overlap 1798018 CACGAGATATAAAAA TGGCGCC CTTATC GGCGCCA TTTTTGTTTAATGAT Shewana3_1541 1799296 - 1798073 - | sodium/glutamate symporter TERM 2147 1799735 - 1799747 + r 71 -3.3 -5.06505 | opp_overlap 1799735, overlap 1799744 ACGTCGATAAATAAA TCGCC ACA GGGGA TTTTTATCTCTGATT Shewana3_1542 1800752 - 1799862 - | hypothetical protein TERM 2148 1800296 - 1800326 + g 77 -11.8 -3.15249 | TGCAGACGCGGGTTT TGGTGGCGGCTTGC TGC GCGAGTCGCTCCCA TTCCTGACAAATATC folX 1801191 - 1800826 - | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase Shewana3_1544 1801289 - 1802395 + | hypothetical protein Shewana3_1545 1802402 - 1803313 + | hypothetical protein TERM 2149 1803394 - 1803359 - T 70 -7.7 -3.73072 | gap 1, opp_overlap 1803354 1803349, overlap 1803360 AACGCCGTCATGAAA TGCCATCATA-AGCCC TTGAG AGGCTTTATGATGGCG TCGAATGATGTCGCT TERM 2150 1803393 - 1803360 - T 77 -11.2 -2.83522 | gap 1, opp_overlap 1803354 1803349, overlap 1803359 ACGCCGTCATGAAAT GCCATCATA-AGCCC TTGAG AGGCTTTATGATGGC GTCGAATGATGTCGC Shewana3_1546 1803668 - 1803444 - | hypothetical protein Shewana3_1547 1803990 - 1804082 + | hypothetical protein TERM 2151 1804150 - 1804169 + T 100 -10.8 -5.66684 | opp_overlap 1804150 ACAAGCACATGAAAA TAGCAACC CTAG GGTTGCTA TTTTTTTATCCGTTG TERM 2152 1804169 - 1804150 - T 100 -10.8 -4.39889 | opp_overlap 1804150 ACAAGCACATGAAAA TAGCAACC CTAG GGTTGCTA TTTTTTTATCCGTTG Shewana3_1548 1804649 - 1804215 - | hypothetical protein TERM 2153 1804791 - 1804815 + H 84 -11.5 -3.07344 | GGATGACTTCATTAG GTTATCCACAG AAT CTGTGGACAAC TATGTTGAAGACTAG TERM 2154 1805061 - 1805079 + H 100 -13.2 -5.19212 | opp_overlap 1805061 TTCGGAAATAAAAAA GCACTGAG GAG CTCAGTGC TTTTTTGATAATGCT TERM 2155 1805079 - 1805061 - H 100 -13.2 -5.63517 | opp_overlap 1805061 TTCGGAAATAAAAAA GCACTGAG GAG CTCAGTGC TTTTTTGATAATGCT TERM 2156 1805113 - 1805143 + H 74 -10.6 -2.62192 | opp_overlap 1805112 1805110 1805113, overlap 1805112 CCCGTCCTGAAATAC GTTGACATAAAGAG GAT TTCTTTATGACAAC ATTAATTAACTCAAG TERM 2157 1805143 - 1805113 - H 71 -9.9 -2.60496 | opp_overlap 1805113 1805112, overlap 1805112 1805110 CCCGTCCTGAAATAC GTTGACATAAAGA GGATT TCTTTATGACAAC ATTAATTAACTCAAG Shewana3_1549 1805136 - 1805531 + | transposase TERM 2158 1805855 - 1805805 - g 70 -2.6 -5.01546 | gap 1, opp_overlap 1805823 AAAGCTACACAAAAA CCACGTTCAGCAAACACTGGATG AAGAAG CATCCTA-ATCTGCTGAAAGAGG AGGGACTGCACGATG TERM 2159 1806130 - 1806150 + G 79 -11.1 -3.54029 | opp_overlap 1806129 1806130 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA TERM 2160 1806150 - 1806130 - g 71 -11.1 -2.79327 | opp_overlap 1806130, overlap 1806129 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA Shewana3_1550 1805561 - 1806364 + | integrase catalytic subunit TERM 2161 1806361 - 1806341 - T 100 -12.6 -4.73682 | GTGCACAATAGAAAA GGCCAGCT ACTGG AGCTGGCC TAAAAACTGTCAACC TERM 2162 1806414 - 1806426 + T 72 -7.7 -3.75437 | TGTTAAGCCTTAGCA GCCTA CAT TAGGC TTTGCTGGCATCGTT Shewana3_1551 1808574 - 1806421 - | phosphate acetyltransferase TERM 2163 1808662 - 1808683 + r 77 -10.2 -3.14548 | opp_overlap 1808662 GTCGCTAATAATAAA GCCGTTTG GCTGAG CAAACGGC TTGAATCATCTTATT TERM 2164 1808683 - 1808662 - R 100 -10.2 -4.44667 | opp_overlap 1808662 GTCGCTAATAATAAA GCCGTTTG GCTGAG CAAACGGC TTGAATCATCTTATT Shewana3_1552 1809896 - 1808697 - | acetate kinase Shewana3_1553 1809984 - 1810481 + | hypothetical protein pflA 1811237 - 1810497 - | pyruvate formate lyase-activating enzyme 1 TERM 2165 1810561 - 1810583 + g 79 -12 -3.26546 | overlap 1810553 TCCATTGTGTCGCGA CTCGGTGGTG CAA CGCCATCGAG TTGATAGGTTTCTCC TERM 2166 1811010 - 1811024 + g 70 -11.4 -2.50443 | overlap 1811009 GGCTTCGCCACCGCT GGCGGT CAC ACCGCC GTTGCTGGCATCTAG TERM 2167 1811254 - 1811294 + r 86 -10.5 -3.75153 | opp_overlap 1811255 1811258, overlap 1811255 1811262 GTGACTCCTGTTGAA ATAAGTGAGGCTGTAGCAC ATT GTACTACAGCCTTACCTAA TTTAGCTTACAGACC TERM 2168 1811293 - 1811255 - R 100 -16.2 -3.53444 | opp_overlap 1811255 1811254 1811262, overlap 1811258 TGACTCCTGTTGAAA TAAGTGAGGCTGTAGCAC ATT GTACTACAGCCTTACCTA ATTTAGCTTACAGAC TERM 2169 1811255 - 1811293 + r 95 -14 -2.84878 | opp_overlap 1811255 1811258, overlap 1811254 1811262 TGACTCCTGTTGAAA TAAGTGAGGCTGTAGCAC ATT GTACTACAGCCTTACCTA ATTTAGCTTACAGAC TERM 2170 1811290 - 1811258 - R 100 -15.7 -3.90744 | opp_overlap 1811255 1811254 1811262, overlap 1811255 CTCCTGTTGAAATAA GTGAGGCTGTAGCAC ATT GTACTACAGCCTTAC CTAATTTAGCTTACA TERM 2171 1811262 - 1811286 + r 95 -12.9 -3.16608 | opp_overlap 1811258 1811255, overlap 1811255 1811254 TGTTGAAATAAGTGA GGCTGTAGCAC ATT GTACTACAGCC TTACCTAATTTAGCT Shewana3_1555 1813583 - 1811301 - | formate acetyltransferase TERM 2172 1811918 - 1811928 + g 76 -8.2 -4.25104 | TGATCTCAAAGTCGA CGGC AAT GCCG TTTTCATCACGCACA TERM 2173 1813907 - 1813922 + H 79 -3.3 -5.40474 | GGTTAATCGCAAATT TGCTA GCAAGG TAGCA TTTTTTTAGCACAAT TERM 2174 1814321 - 1814305 - H 77 -6.5 -4.67011 | overlap 1814306 AATCTTACCTAAAAA TGCGCTT TAA AAGCGCC ATAGCAAAAAGGTGA TERM 2175 1814320 - 1814306 - H 76 -10 -3.39483 | overlap 1814305 ATCTTACCTAAAAAT GCGCTT TAA AAGCGC CATAGCAAAAAGGTG TERM 2176 1814362 - 1814350 - H 72 -6.3 -4.34771 | GAAAACTGACTAAAA TTGGT ATG ACCAA TTAACCTTTTGTGTT Shewana3_1556 1814601 - 1815575 + | methionine gamma-lyase TERM 2177 1815662 - 1815644 - f 100 -8.8 -5.252 | opp_overlap 1815645, overlap 1815645 TAGGCTTATAAAAAA TGCCCAGT GTT ACTGGGCT TTTTTTGCTGTATTC TERM 2178 1815661 - 1815645 - f 100 -12.3 -3.74397 | opp_overlap 1815645, overlap 1815644 AGGCTTATAAAAAAT GCCCAGT GTT ACTGGGC TTTTTTTGCTGTATT TERM 2179 1815645 - 1815661 + F 100 -12.3 -5.62219 | opp_overlap 1815645 1815644 AGGCTTATAAAAAAT GCCCAGT GTT ACTGGGC TTTTTTTGCTGTATT Shewana3_1557 1815829 - 1817397 + | hypothetical protein TERM 2180 1817507 - 1817540 + T 89 -11.9 -3.25888 | opp_overlap 1817515, overlap 1817509 1817515 TGGTTAAATAGTAGA TAAAAAAACGGCATC CGAG GATGCCGTTTTTGTG TGGTTTTCTATCTTC TERM 2181 1817509 - 1817538 + T 93 -12.3 -3.17377 | opp_overlap 1817515, overlap 1817507 1817515 GTTAAATAGTAGATA AAAAAACGGCATC CGAG GATGCCGTTTTTG TGTGGTTTTCTATCT TERM 2182 1817515 - 1817532 + T 100 -11.3 -5.07941 | opp_overlap 1817515, overlap 1817509 1817507 TAGTAGATAAAAAAA CGGCATC CGAG GATGCCG TTTTTGTGTGGTTTT TERM 2183 1817532 - 1817515 - T 100 -11.3 -5.74122 | opp_overlap 1817509 1817507 1817515 TAGTAGATAAAAAAA CGGCATC CGAG GATGCCG TTTTTGTGTGGTTTT Shewana3_1558 1820218 - 1817567 - | TonB-dependent receptor TERM 2184 1820591 - 1820609 + r 71 -2.4 -5.1356 | TAACCTCGGTGTTTA TACGGTTT TGA ATACTGTA TTTTTATTGGTGCCG TERM 2185 1820808 - 1820767 - R 100 -14.7 -3.1319 | opp_overlap 1820777 1820797, overlap 1820770 1820772 1820777 GCAAAATGCACTTAA CTAGACAAAAGAAGTGAAT TTAA ATTCACTTCTTTTGTCATG CAAATATTTTATGAC TERM 2186 1820805 - 1820770 - R 100 -19.4 -2.76456 | opp_overlap 1820777 1820797, overlap 1820767 1820772 1820777 AAATGCACTTAACTA GACAAAAGAAGTGAAT TTAA ATTCACTTCTTTTGTC ATGCAAATATTTTAT TERM 2187 1820803 - 1820772 - R 100 -16.2 -2.92371 | opp_overlap 1820777 1820797, overlap 1820770 1820767 1820777 ATGCACTTAACTAGA CAAAAGAAGTGAAT TTAA ATTCACTTCTTTTG TCATGCAAATATTTT TERM 2188 1820777 - 1820798 + r 100 -10.3 -4.4648 | opp_overlap 1820772 1820770 1820767 1820777, overlap 1820797 CTTAACTAGACAAAA GAAGTGAAT TTAA ATTCACTTC TTTTGTCATGCAAAT TERM 2189 1820798 - 1820777 - R 100 -10.3 -4.614 | opp_overlap 1820777 1820797, overlap 1820772 1820770 1820767 CTTAACTAGACAAAA GAAGTGAAT TTAA ATTCACTTC TTTTGTCATGCAAAT Shewana3_1559 1821873 - 1820884 - | C4-dicarboxylate transporter/malic acid transport protein Shewana3_1560 1823069 - 1821996 - | methyltransferase type 12 TERM 2190 1823258 - 1823239 - R 91 -7.9 -4.82901 | opp_overlap 1823239 TTTCGGCCATAAAAA TACCCAG ACAATG CTGGGTA TTTTTAGCCGGACGA TERM 2191 1823239 - 1823258 + r 82 -7.9 -4.56597 | opp_overlap 1823239 TTTCGGCCATAAAAA TACCCAG ACAATG CTGGGTA TTTTTAGCCGGACGA Shewana3_1561 1824251 - 1823283 - | cysteine synthase Shewana3_1562 1824497 - 1825846 + | RDD domain-containing protein TERM 2192 1826426 - 1826442 + G 71 -6.5 -4.19177 | overlap 1826430 CGCAGGTTAACTACC GTGACCG TGA CAGTCAC TTTATCTTCGGGGAT Shewana3_1563 1825843 - 1826970 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2193 1827018 - 1826965 - f 86 -8.1 -4.58395 | opp_overlap 1826975 1826976, overlap 1826972 1826973 1826976 GTGATTTTGCAAAAA CGCTAAATCGACTCAGGCCCCATTG CAAG CAATGGGGCCTGAGCTTTTATATCA GCACATTGATTAAAC TERM 2194 1827010 - 1826972 - f 100 -12.5 -3.8046 | gap 1, opp_overlap 1826975 1826976, overlap 1826965 1826973 1826976 TGCAAAAACGCTAAA TCGACTCAGGCCCCATTG CAAG CAATGGGGCCTGAG-CTT TTATATCAGCACATT TERM 2195 1827009 - 1826973 - f 100 -16 -2.87553 | gap 1, opp_overlap 1826975 1826976, overlap 1826972 1826965 1826976 GCAAAAACGCTAAAT CGACTCAGGCCCCATTG CAAG CAATGGGGCCTGAG-CT TTTATATCAGCACAT TERM 2196 1826975 - 1827008 + F 100 -19.7 -4.52589 | opp_overlap 1826973 1826972 1826965 1826976, overlap 1826976 AAAAACGCTAAATCG ACTCAGGCCCCATTG CAAG CAATGGGGCCTGAGC TTTTATATCAGCACA TERM 2197 1827007 - 1826976 - f 100 -23.2 -2.67441 | opp_overlap 1826975 1826976, overlap 1826973 1826972 1826965 AAAACGCTAAATCGA CTCAGGCCCCATTG CAAG CAATGGGGCCTGAG CTTTTATATCAGCAC TERM 2198 1826976 - 1827007 + F 100 -23.2 -3.31232 | opp_overlap 1826976 1826973 1826972 1826965, overlap 1826975 AAAACGCTAAATCGA CTCAGGCCCCATTG CAAG CAATGGGGCCTGAG CTTTTATATCAGCAC Shewana3_1564 1827141 - 1827590 + | hypothetical protein TERM 2199 1827608 - 1827629 + T 86 -10.2 -3.87641 | opp_overlap 1827608 1827597 AGAATCTCGATTTAA GCCCACAA GCCTTA TTGTGGGC TTTATGCAAAATCTT TERM 2200 1827629 - 1827608 - T 76 -10.2 -3.0701 | opp_overlap 1827608, overlap 1827597 AGAATCTCGATTTAA GCCCACAA GCCTTA TTGTGGGC TTTATGCAAAATCTT Shewana3_1565 1830049 - 1827650 - | hypothetical protein TERM 2201 1829132 - 1829117 - G 80 -4.6 -5.14563 | opp_overlap 1829117 TTTCTCATCAAAAAA CAGCGC AAAA GTGCTG TTGATATCGAGCTGG TERM 2202 1829974 - 1829954 - G 82 -11.1 -3.75897 | AATCGTTAATTGAAA TTGGCTGGC AGA GCCCGCCAA GCTTGGCGAACTGAG TERM 2203 1830144 - 1830168 + r 100 -14.4 -3.59247 | CTGAAAACTCAGGTG GCACTGGATG GCGAG CATCCAGTGC TTTGGGGGATTATTC Shewana3_1566 1830957 - 1830178 - | putative sulfate transport protein CysZ TERM 2204 1831152 - 1831168 + H 75 -5.1 -4.91109 | CCTGCATCCCTATTA GTCATCG CCC TGATGGC TTTTTATACTGAGAC TERM 2205 1831478 - 1831462 - g 75 -9.3 -3.93868 | overlap 1831460 GTTTGAAAATAAAGA GGGCCGC CTT GCGGGCC AATACGCCAGTTATG TERM 2206 1832362 - 1832347 - g 70 -10.4 -2.90349 | overlap 1832346 GGCGCAAAGTGAAAG CGCCAG AGTG CTGGCG GCGGCCGTCGCTCAG TERM 2207 1832780 - 1832761 - g 83 -10 -4.19953 | gap 1 CATTCAAGTCGAAAA CGGCTG-GG AAG CCGCAGCCG AACTGGCGCTGCAGG Shewana3_1567 1831199 - 1834627 + | chromosome segregation protein SMC Shewana3_1568 1834654 - 1835694 + | cell division protein ZipA TERM 2208 1835727 - 1835749 + F 100 -12.7 -5.08011 | opp_overlap 1835727 GCGGTGATAGACAGA TGGGGCCGC TAAAT GCGGCCTCA TTTTTTGCAACTTTT TERM 2209 1835749 - 1835727 - f 76 -10.5 -3.05022 | opp_overlap 1835727 GCGGTGATAGACAGA TGGGGCCGC TAAAT GCGGCCTCA TTTTTTGCAACTTTT TERM 2210 1836482 - 1836502 + G 70 -3.1 -4.89852 | opp_overlap 1836484, overlap 1836484 1836486 GCTCGACAGTAAAAT TACCGCGTC ACG GGCGCTGTC TTTTTATGCCTATGC Shewana3_1569 1835787 - 1837862 + | DNA ligase, NAD-dependent TERM 2211 1837886 - 1837902 + F 100 -11.5 -5.28176 | opp_overlap 1837886 CGCTTCATTGATAAA GCCCTGC CTT GCGGGGC TTTTTTATGGCTAAG TERM 2212 1837902 - 1837886 - f 83 -9.3 -3.91897 | opp_overlap 1837886 CGCTTCATTGATAAA GCCCTGC CTT GCGGGGC TTTTTTATGGCTAAG TERM 2213 1838160 - 1838170 + G 74 -6.8 -4.37886 | CCGATTTTTTTATAT GCCA TCT TGGC TTTTCTCGCCCGTGG TERM 2214 1838238 - 1838267 + G 82 -7.2 -4.72986 | opp_overlap 1838238 GATAGATCAGAATTA GTCAGGCTCTTC TATCCC GAAAAGTCTGAC TTTTTACTCGCACTC Shewana3_1570 1838088 - 1838582 + | hypothetical protein TERM 2215 1838627 - 1838658 + F 70 -7.4 -3.75863 | opp_overlap 1838627 1838624 TCTAATATCTAATCA CTGAGGGATAAT TTGTGTGT ACTATCCCTCAG TTTGATAAGCATTTT TERM 2216 1838658 - 1838627 - f 70 -9.6 -2.7898 | opp_overlap 1838627, overlap 1838624 TCTAATATCTAATCA CTGAGGGATAAT TTGTGTGT ACTATCCCTCAG TTTGATAAGCATTTT TERM 2217 1839081 - 1839091 + G 70 -2.4 -5.00884 | AAGGCGATGCGTTTT AGCC AGA GGCG TTTTTTAGAGAGCGT Shewana3_1571 1838793 - 1839998 + | metal dependent phosphohydrolase Shewana3_1572 1840055 - 1840912 + | NAD-dependent epimerase/dehydratase Shewana3_1573 1841013 - 1841666 + | DSBA oxidoreductase TERM 2218 1841989 - 1842009 + F 100 -14.1 -4.7416 | opp_overlap 1841992 CGATCTGTTTTCCAA TAACCCAGC TAT GCTGGGTTA TTTTTGCCATTTTGC TERM 2219 1842006 - 1841992 - f 90 -11.4 -3.61398 | opp_overlap 1841989 TCTGTTTTCCAATAA CCCAGC TAT GCTGGG TTATTTTTGCCATTT Shewana3_1574 1842379 - 1842645 + | hypothetical protein Shewana3_1575 1842657 - 1844393 + | Na+/solute symporter TERM 2220 1844457 - 1844420 - f 95 -11.5 -3.76952 | opp_overlap 1844426 1844431, overlap 1844431 TTTAGCTAAGCTAAA TTAAGATAAAAGGACGC ATTA GCGTCCTTTTGTTTTAA TGGGGTCAGCGCAAG TERM 2221 1844426 - 1844451 + F 100 -12.7 -4.26903 | opp_overlap 1844420 1844431, overlap 1844431 TAAGCTAAATTAAGA TAAAAGGACGC ATTA GCGTCCTTTTG TTTTAATGGGGTCAG TERM 2222 1844446 - 1844431 - f 100 -10.4 -4.76274 | opp_overlap 1844426 1844431, overlap 1844420 TAAATTAAGATAAAA GGACGC ATTA GCGTCC TTTTGTTTTAATGGG TERM 2223 1844431 - 1844446 + F 100 -10.4 -5.13722 | opp_overlap 1844431 1844420, overlap 1844426 TAAATTAAGATAAAA GGACGC ATTA GCGTCC TTTTGTTTTAATGGG TERM 2224 1845586 - 1845596 + G 79 -8.2 -4.3534 | overlap 1845575 AAATTCTCGGTGAGG CGCC GAT GGCG TTTTGCTGGTTAGCC Shewana3_1576 1844556 - 1846418 + | cyclic nucleotide-binding protein Shewana3_1577 1846418 - 1847104 + | exonuclease, RNase T and DNA polymerase III Shewana3_1578 1847672 - 1847247 - | MarR family transcriptional regulator TERM 2225 1848198 - 1848208 + G 76 -8.2 -4.2704 | GCCATATCAGCGGTT GGCG CAG CGCC TTTATTAGTGATGGG Shewana3_1579 1847909 - 1848904 + | alcohol dehydrogenase TERM 2226 1849041 - 1849067 + F 100 -13 -5.0916 | GAGTTACCGTTTGAG CTGAAGCCTGTG TTA CTCGGGCTTCAG TTTTTCTATTCACAA TERM 2227 1849304 - 1849327 + F 71 -8.2 -3.53444 | opp_overlap 1849305, overlap 1849302 1849305 AGGCATACTGACCGA ACGATAGTTC TTTA GAACTATCGG TTTAAAGAAAGGTGG TERM 2228 1849305 - 1849326 + F 80 -11.7 -2.71924 | opp_overlap 1849305, overlap 1849302 1849304 GGCATACTGACCGAA CGATAGTTC TTTA GAACTATCG GTTTAAAGAAAGGTG TERM 2229 1849326 - 1849305 - f 84 -11.7 -3.09015 | opp_overlap 1849302 1849304 1849305 GGCATACTGACCGAA CGATAGTTC TTTA GAACTATCG GTTTAAAGAAAGGTG Shewana3_1580 1849483 - 1850082 + | hypothetical protein TERM 2230 1850109 - 1850078 - T 100 -8.8 -5.10064 | opp_overlap 1850080 1850085, overlap 1850079 1850080 1850085 CTGAAGAGATAAAAA TGTAAAAGGCCATC CCAA GATGGCCTTTTATC TGTGTTCGGGATTTA TERM 2231 1850108 - 1850079 - T 100 -12.3 -3.64954 | opp_overlap 1850080 1850085, overlap 1850078 1850080 1850085 TGAAGAGATAAAAAT GTAAAAGGCCATC CCAA GATGGCCTTTTAT CTGTGTTCGGGATTT TERM 2232 1850107 - 1850080 - T 100 -15.8 -2.77888 | opp_overlap 1850080 1850085, overlap 1850079 1850078 1850085 GAAGAGATAAAAATG TAAAAGGCCATC CCAA GATGGCCTTTTA TCTGTGTTCGGGATT TERM 2233 1850080 - 1850107 + T 100 -15.8 -3.10017 | opp_overlap 1850080 1850079 1850078 1850085, overlap 1850085 GAAGAGATAAAAATG TAAAAGGCCATC CCAA GATGGCCTTTTA TCTGTGTTCGGGATT TERM 2234 1850085 - 1850102 + T 100 -11.3 -4.68124 | opp_overlap 1850080 1850079 1850078 1850085, overlap 1850080 GATAAAAATGTAAAA GGCCATC CCAA GATGGCC TTTTATCTGTGTTCG TERM 2235 1850102 - 1850085 - T 100 -11.3 -4.5115 | opp_overlap 1850085 1850080, overlap 1850080 1850079 1850078 GATAAAAATGTAAAA GGCCATC CCAA GATGGCC TTTTATCTGTGTTCG Shewana3_1581 1851189 - 1850125 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2236 1851233 - 1851213 - R 100 -7.5 -5.63517 | CTCTCAAATAAAAAA GGCAGAACC TGA AGTGCTGCC TCAAATCGACAACAA Shewana3_1582 1851953 - 1851282 - | GntR family transcriptional regulator TERM 2237 1852097 - 1852067 - H 100 -8.5 -5.09426 | gap 2 CTTAAGCCTAAAAAA GCATTATCGGCCGAT TTT ATCGG-CGA-AATGC ATCGGGATAAGTACG Shewana3_1583 1852270 - 1852821 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 2238 1853255 - 1853233 - T 70 -7.1 -3.76952 | gap 1 TTGAGTTAATCGAAA TTACTCTGCC GTTT GGC-GAGTAA TCAAAATTTAAATCA TERM 2239 1855198 - 1855228 + T 100 -8.5 -5.00884 | opp_overlap 1855197 AATCTGGTTAGAGAT GCCAAAGATAA ACTGAAAAA TTATCTTTGGC TTTTTTAAGCCCGCT TERM 2240 1855352 - 1855312 - T 76 -2.7 -5.27779 | opp_overlap 1855319 1855324 1855326 1855331, overlap 1855326 GTTAATACGAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 2241 1855932 - 1855920 - T 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 2242 1856730 - 1856714 - T 85 -9.4 -4.08546 | overlap 1856727 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 2243 1857184 - 1857212 + T 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 2244 1858682 - 1858664 - T 91 -10.3 -4.08111 | opp_overlap 1858664 TAAAGAGAGCAGAAA GCCAGCT GCATA AGCTGGC TTTTTTGTTTGTGCT TERM 2245 1858664 - 1858682 + T 100 -10.3 -5.73978 | opp_overlap 1858664 TAAAGAGAGCAGAAA GCCAGCT GCATA AGCTGGC TTTTTTGTTTGTGCT TERM 2246 1858837 - 1858820 - T 95 -7.7 -5.10461 | opp_overlap 1858820 TCGATCCAATAAAAA GAGCAAC CTAG GCTGCTC TTTCTGTATTGGATA Shewana3_1584 1859612 - 1858896 - | hypothetical protein TERM 2247 1859752 - 1859776 + r 71 -8.6 -3.51924 | opp_overlap 1859752 1859757, overlap 1859756 GGGATCTTGAATAAA GAAAAGGCTC ACTGG GAGCCCTTTC TTGTCTAAGTACGAG TERM 2248 1859776 - 1859752 - R 93 -10.8 -4.16842 | opp_overlap 1859752 1859756, overlap 1859757 GGGATCTTGAATAAA GAAAAGGCTC ACTGG GAGCCCTTTC TTGTCTAAGTACGAG TERM 2249 1859771 - 1859757 - R 90 -7.1 -5.09762 | opp_overlap 1859756 1859752, overlap 1859752 CTTGAATAAAGAAAA GGCTC ACTGG GAGCC CTTTCTTGTCTAAGT cpdB 1861896 - 1859839 - | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 2250 1861387 - 1861404 + g 76 -2.7 -5.07053 | TTTAATGATATAAGG GGTGA ATAAATGC TCACC TTTTTTCACATCATT TERM 2251 1861950 - 1861931 - H 71 -9.4 -3.06162 | overlap 1861933 TATTTGACCCTAATA CATGTTCT TTTG AGAACATG CCCATCATCCTGTTA TERM 2252 1862679 - 1862654 - g 72 -3.9 -4.82901 | overlap 1862655 1862656 1862667 GCTTGCTCAGAAAAA CCGGCAGCC AATACCGA GGCCGCCAA TGCGGTCGCGACGCA TERM 2253 1864609 - 1864598 - g 71 -7.2 -4.07885 | CATGGTGGCTTAAAA GCCG AAAA CGGC GATAAGTTCCGTGAT Shewana3_1586 1862588 - 1864735 + | peptidyl-dipeptidase Dcp TERM 2254 1864761 - 1864786 + F 100 -14.1 -5.46629 | opp_overlap 1864754 1864761 GTAAAAAGGGCCAAA GGCTTGGTAGG GCAA CCTATCAAGCC TTTTTTTACGCTATT TERM 2255 1864786 - 1864761 - f 93 -11.9 -3.68853 | opp_overlap 1864761, overlap 1864754 GTAAAAAGGGCCAAA GGCTTGGTAGG GCAA CCTATCAAGCC TTTTTTTACGCTATT TERM 2256 1865470 - 1865480 + G 73 -5.4 -4.63218 | CGCGCCTAAGATGGG TCAC TTT GTGA TTTTCTTAAGCGAGC Shewana3_1587 1864961 - 1865584 + | prolyl 4-hydroxylase, alpha subunit TERM 2257 1865637 - 1865664 + F 100 -14.3 -5.27779 | TAATATGATTTCAAG GCGCAGTGTTT CTAAGT AAACACTGCGC TTTTTTGATCTTAAA Shewana3_1588 1865998 - 1866600 + | GCN5-related N-acetyltransferase TERM 2258 1867034 - 1867010 - g 70 -8.6 -3.66803 | gap 1, opp_overlap 1867010 1867016 GCGGAATATGCCAAA GC-CCAAGGCG CTCG CGCCTTAGTGC TGGAGACCCAAAAGG Shewana3_1589 1866683 - 1867147 + | GCN5-related N-acetyltransferase Shewana3_1590 1867182 - 1867577 + | hypothetical protein TERM 2259 1867581 - 1867633 + F 74 -5 -4.82855 | gap 2, opp_overlap 1867595 1867599, overlap 1867593 1867595 1867599 1867630 GCCACCATGTAAGCC TTGCCTGC-GTTAA-ACAAAGGAGCC TGA GGCTCCTTTGTGTTATCTGAAGTCTA TTTTTAGATTTACTG TERM 2260 1867593 - 1867619 + F 100 -13.8 -3.51633 | opp_overlap 1867595 1867599, overlap 1867581 1867595 1867599 GCCTTGCCTGCGTTA AACAAAGGAGCC TGA GGCTCCTTTGTG TTATCTGAAGTCTAT TERM 2261 1867595 - 1867617 + F 100 -16.4 -3.32966 | opp_overlap 1867595 1867599, overlap 1867593 1867581 1867599 CTTGCCTGCGTTAAA CAAAGGAGCC TGA GGCTCCTTTG TGTTATCTGAAGTCT TERM 2262 1867617 - 1867595 - f 100 -16.4 -3.53012 | opp_overlap 1867593 1867581 1867595 1867599, overlap 1867599 CTTGCCTGCGTTAAA CAAAGGAGCC TGA GGCTCCTTTG TGTTATCTGAAGTCT TERM 2263 1867599 - 1867613 + F 100 -11.4 -4.31164 | opp_overlap 1867599 1867595, overlap 1867595 1867593 1867581 CCTGCGTTAAACAAA GGAGCC TGA GGCTCC TTTGTGTTATCTGAA TERM 2264 1867613 - 1867599 - f 100 -11.4 -4.41348 | opp_overlap 1867595 1867593 1867581 1867599, overlap 1867595 CCTGCGTTAAACAAA GGAGCC TGA GGCTCC TTTGTGTTATCTGAA Shewana3_1591 1867839 - 1868225 + | hypothetical protein Shewana3_1592 1868461 - 1869525 + | hypothetical protein TERM 2265 1870015 - 1870041 + G 73 -10.9 -3.25207 | gap 1, overlap 1870014 1870012 TGGTTGTAGTGTCTG TGTCAC-CGGCC TGTT GGCCGAGTGGCA TCTGTTATCGTTTAC Shewana3_1593 1869518 - 1870642 + | hypothetical protein Shewana3_1594 1870642 - 1871157 + | hypothetical protein TERM 2266 1871178 - 1871213 + F 80 -6.2 -4.77036 | gap 1, opp_overlap 1871184, overlap 1871184 TACTCTGATGATCTT TAAC-AAGATGGTGAGC CAT GCCCGCCATCTTCGCTA TTTTTCCTAGTCCAA TERM 2267 1871206 - 1871184 - f 80 -9.8 -3.63991 | opp_overlap 1871184 1871178 GATGATCTTTAACAA GATGGTGAGC CAT GCCCGCCATC TTCGCTATTTTTCCT TERM 2268 1871184 - 1871206 + F 76 -9.8 -3.33434 | opp_overlap 1871184, overlap 1871178 GATGATCTTTAACAA GATGGTGAGC CAT GCCCGCCATC TTCGCTATTTTTCCT TERM 2269 1871436 - 1871413 - g 82 -6.6 -4.89477 | opp_overlap 1871426, overlap 1871415 TGTTTAATAACAAAA CGCTGTTGGC GTTA GCCATCAGTG GCGTGTGTGGGTTTG TERM 2270 1874023 - 1874012 - g 76 -5.8 -4.6902 | overlap 1874014 TGAGAACGTGAAAAA GCCA CCCG TGGC GCAAATTCAGCACAT Shewana3_1595 1871397 - 1874243 + | PKD domain-containing protein TERM 2271 1874292 - 1874268 - f 80 -11.5 -2.60496 | opp_overlap 1874273, overlap 1874273 TCTTTCTTTAAATAT CAAAAGCCTGC ATT GCAGGCTTTTT TACTTTGATTCACTT TERM 2272 1874273 - 1874287 + F 100 -11.4 -5.41359 | opp_overlap 1874268 1874273 CTTTAAATATCAAAA GCCTGC ATT GCAGGC TTTTTTACTTTGATT TERM 2273 1874287 - 1874273 - f 100 -11.4 -4.49756 | opp_overlap 1874273, overlap 1874268 CTTTAAATATCAAAA GCCTGC ATT GCAGGC TTTTTTACTTTGATT Shewana3_1596 1874475 - 1874903 + | hypothetical protein TERM 2274 1874955 - 1874928 - T 100 -21.4 -4.9792 | opp_overlap 1874926, overlap 1874944 GATGGTAGATAAAAA GCGGGGCGCTAA TTGA TTAGCGCCCCGC TAAGGATTAAAGCAC Shewana3_1597 1875858 - 1874962 - | hypothetical protein TERM 2275 1875147 - 1875171 + g 78 -6.4 -4.82855 | gap 1 CGATGGTCTCGGCCA GCTCTG-CGGG GAGT TCCGCCAGGGC TTTTTGGGTTTGCTG Shewana3_1598 1876627 - 1875869 - | hypothetical protein Shewana3_1599 1877166 - 1876627 - | hypothetical protein TERM 2276 1877273 - 1877228 - R 71 -4.7 -4.63218 | opp_overlap 1877236, overlap 1877229 1877241 CGTGTTGCAATAAAA GGTCCAAATTAAGGGGCTTGG CAAA CTAAGCTCATTAATTTGGCAC TCCCAGTGTTGCACT Shewana3_1600 1877586 - 1877302 - | heat shock protein DnaJ domain-containing protein TERM 2277 1877992 - 1877978 - H 100 -7.1 -5.64274 | TTAGGCATAAAAAAA CCAGC TTAAT GCTGG CCTAGTGATAATAAG TERM 2278 1879250 - 1879266 + G 70 -4.3 -4.67038 | overlap 1879251 GCCGATATTGCTCCA GGGTTGC AGC GCAGCCG TTTTGGTTTTGAGCA TERM 2279 1880108 - 1880098 - g 76 -6.8 -4.46404 | overlap 1880099 1880100 CAATCAATATCAAAA GCTC GAT GAGC GTAAGCTTGAGCTTA Shewana3_1601 1878599 - 1880740 + | 23S rRNA m(2)G2445 methyltransferase Shewana3_1602 1880733 - 1880972 + | glutaredoxin 2 TERM 2280 1881767 - 1881750 - g 72 -3.5 -4.87786 | gap 1 TGAAGCCGAGAAAAA CGCCTTAT TCG ATAAG-CG ATTAGCCGAAGAAGA TERM 2281 1882228 - 1882209 - g 82 -7.2 -4.62069 | opp_overlap 1882195 1882194 1882224 GGGTGAGGGTAAAAA GACCATCA CCAT TAATGGTC AAGACCGTCATATCT Shewana3_1603 1880974 - 1882896 + | ABC transporter ATPase component Shewana3_1604 1882924 - 1884747 + | hypothetical protein TERM 2282 1884777 - 1884795 + F 100 -13.2 -5.88471 | opp_overlap 1884777 TTCAGACTCAAAAAA TCGAGGCA AAA TGCCTCGA TTTTTTTTAATCATG TERM 2283 1884795 - 1884777 - f 100 -13.2 -5.1287 | opp_overlap 1884777 TTCAGACTCAAAAAA TCGAGGCA AAA TGCCTCGA TTTTTTTTAATCATG Shewana3_1605 1884935 - 1885111 + | ribosome modulation factor TERM 2284 1885167 - 1885184 + T 100 -11.3 -4.9792 | opp_overlap 1885166 1885167 GTAATGCAGCATAAT TGCCCTC AGAT GAGGGCA TTTTTGTATCGAGTC TERM 2285 1885184 - 1885167 - T 80 -11.3 -2.6627 | opp_overlap 1885167, overlap 1885166 GTAATGCAGCATAAT TGCCCTC AGAT GAGGGCA TTTTTGTATCGAGTC Shewana3_1606 1885734 - 1885219 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase Shewana3_1607 1887557 - 1885809 - | ATP-dependent protease TERM 2286 1887257 - 1887275 + g 74 -4.6 -4.82901 | GCGGCGCTTCATACT GCCATT GGAACTG AATGGC TTTTTCTACAGGCCG TERM 2287 1887581 - 1887613 + H 71 -4.1 -4.788 | opp_overlap 1887587 1887589, overlap 1887583 ACCGCGATTTTACCA TACCAAGACAGCAAG TCT CTTACTGTATAGGTG TTTTTGCGTTGGTTT TERM 2288 1887862 - 1887893 + H 100 -13.2 -3.95219 | opp_overlap 1887869, overlap 1887869 1887891 CTCCGCCATATTTTA CGGAAAAGCCATCA GCAA TGATGGCTTTTTTG TTTGTACAATTTGAA TERM 2289 1887886 - 1887869 - H 88 -9.9 -4.19258 | opp_overlap 1887862 1887869 ATATTTTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTGTACA TERM 2290 1887869 - 1887886 + H 100 -9.9 -5.72622 | opp_overlap 1887869, overlap 1887862 ATATTTTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTGTACA TERM 2291 1887979 - 1887958 - H 100 -14.5 -3.87373 | opp_overlap 1887958 CATATTTGTTAGAAA GGCCGCTAA GTCA TTAGCGGCC TTTTTGCATTCAAGT TERM 2292 1887958 - 1887979 + H 100 -14.5 -4.74504 | opp_overlap 1887958 CATATTTGTTAGAAA GGCCGCTAA GTCA TTAGCGGCC TTTTTGCATTCAAGT TERM 2293 1888622 - 1888653 + H 100 -13.2 -4.70879 | opp_overlap 1888629, overlap 1888629 CTCCGCCATATTCTA CGGAAAAGCCATCA GCAA TGATGGCTTTTTTG TTTTTGGCATTTCGG TERM 2294 1888629 - 1888646 + H 100 -9.9 -5.93252 | opp_overlap 1888629, overlap 1888622 ATATTCTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGGC TERM 2295 1888646 - 1888629 - H 88 -9.9 -4.19258 | opp_overlap 1888629 1888622 ATATTCTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGGC TERM 2296 1888729 - 1888746 + H 100 -4.1 -5.93252 | opp_overlap 1888730, overlap 1888730 ATATTCCACAGTTAA ACCATCA ACAA TGATGGC TTTTTTATTTTTGCC TERM 2297 1888730 - 1888745 + H 76 -7.6 -4.13511 | opp_overlap 1888730, overlap 1888729 TATTCCACAGTTAAA CCATCA ACAA TGATGG CTTTTTTATTTTTGC TERM 2298 1888745 - 1888730 - H 70 -7.6 -3.71378 | opp_overlap 1888730 1888729 TATTCCACAGTTAAA CCATCA ACAA TGATGG CTTTTTTATTTTTGC TERM 2299 1888820 - 1888841 + H 93 -8.7 -4.4267 | opp_overlap 1888810 1888820 CAAATGCAATCCAAA GACCGCTAA CCAA TTCGCGGTC TTTTGCATTTTGGCC TERM 2300 1888841 - 1888820 - H 78 -8.7 -3.79481 | opp_overlap 1888820, overlap 1888810 CAAATGCAATCCAAA GACCGCTAA CCAA TTCGCGGTC TTTTGCATTTTGGCC Shewana3_1608 1889127 - 1889771 + | response regulator TERM 2301 1889952 - 1889971 + G 70 -10.8 -3.0094 | GGTTTATCGCATGTA TGACGTCA AAGG TGACGTCA TCTATGTGGGTAAAG TERM 2302 1891013 - 1890999 - g 74 -4.2 -4.82901 | opp_overlap 1891002 TTTGTCCCATAAAAA CACCGT TGA ACAGCG TTTTGTCTTGCTGGA uvrC 1889881 - 1891710 + | excinuclease ABC subunit C Shewana3_1610 1891758 - 1892306 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 2303 1892780 - 1892760 - f 75 -10.5 -2.89742 | overlap 1892763 TGGAATCGGTAGACA CAAGGGATT TAA AATCCCTCG CTGGTAACAGCGTGC TERM 2304 1892777 - 1892763 - f 73 -8.6 -3.5947 | overlap 1892760 AATCGGTAGACACAA GGGATT TAA AATCCC TCGCTGGTAACAGCG TERM 2305 1892998 - 1892978 - f 75 -10.5 -2.89742 | overlap 1892981 TGGAATCGGTAGACA CAAGGGATT TAA AATCCCTCG CTGGTAACAGCGTGC TERM 2306 1892995 - 1892981 - f 73 -8.6 -3.5947 | overlap 1892978 AATCGGTAGACACAA GGGATT TAA AATCCC TCGCTGGTAACAGCG TERM 2307 1893056 - 1893091 + F 93 -13.4 -2.71712 | opp_overlap 1893064, overlap 1893064 TATTCTTAGTGAATA GTAAATAAGCCTCGAC ATCA GTCGGGGCTTTTTTGC ATTTGCAGCACGCGA TERM 2308 1893083 - 1893064 - f 85 -9.2 -4.08853 | opp_overlap 1893056 1893064 GTGAATAGTAAATAA GCCTCGAC ATCA GTCGGGGC TTTTTTGCATTTGCA TERM 2309 1893064 - 1893083 + F 100 -11.4 -5.22039 | opp_overlap 1893064, overlap 1893056 GTGAATAGTAAATAA GCCTCGAC ATCA GTCGGGGC TTTTTTGCATTTGCA Shewana3_1611 1893968 - 1894246 + | hypothetical protein TERM 2310 1894404 - 1894427 + F 86 -11.8 -2.98823 | TAGCAAAGTGTCCTA TTGCCTTGGC TGAA GTCAAGGCAA TCTGTATCGCACAAC Shewana3_1612 1894810 - 1896678 + | hypothetical protein TERM 2311 1896768 - 1896747 - g 84 -2.4 -5.59502 | opp_overlap 1896740, overlap 1896740 TAAAAAATGAAAAAA TCAAAACT GATGAA AATTTTGA TTTTATCTTCACTGA TERM 2312 1897034 - 1897015 - g 76 -6.6 -4.55826 | TGGAAAATACTAAAA TTCATTTT GAAA AAAATGAA ACTACAATTCCTGTA Shewana3_1613 1896738 - 1898720 + | rRNA (guanine-N(1)-)-methyltransferase TERM 2313 1899839 - 1899859 + T 75 -8.9 -3.71913 | opp_overlap 1899839, overlap 1899837 TTCACCCATAAAAAA GCCCCGTGG TTT TCACGAGGC TCTTTTACGTATCCG TERM 2314 1899859 - 1899839 - T 100 -10.4 -5.28176 | opp_overlap 1899839 1899837 TTCACCCATAAAAAA GCCCCGTG GTTTT CACGAGGC TCTTTTACGTATCCG Shewana3_1615 1900155 - 1899880 - | histone family protein DNA-binding protein TERM 2315 1900924 - 1900902 - R 70 -7.7 -3.67792 | opp_overlap 1900903, overlap 1900903 CTAGAGTTAGTTAAA TTCCGCCTT ATAAA AAGGCGGAT TATTGACTATTGTTG TERM 2316 1900923 - 1900903 - R 77 -11.2 -2.80354 | opp_overlap 1900903, overlap 1900902 TAGAGTTAGTTAAAT TCCGCCTT ATAAA AAGGCGGA TTATTGACTATTGTT TERM 2317 1900903 - 1900923 + r 88 -11.2 -3.75144 | opp_overlap 1900903 1900902 TAGAGTTAGTTAAAT TCCGCCTT ATAAA AAGGCGGA TTATTGACTATTGTT Shewana3_1616 1902412 - 1901027 - | hypothetical protein TERM 2318 1901468 - 1901480 + g 70 -4.8 -4.68593 | TTTTAAATCTGTTTC TGCC CGTTC GGCA TTTTTACGTAGTGAA TERM 2319 1901866 - 1901884 + g 78 -6 -4.79223 | overlap 1901867 GTGCTAAAGACGCTG TTGACTGT AGA GCAGTCAG TTTTTCATCATATGG Shewana3_1617 1903385 - 1902543 - | hypothetical protein Shewana3_1618 1903713 - 1904345 + | ECF subfamily RNA polymerase sigma-24 factor Shewana3_1619 1904362 - 1907187 + | serine/threonine protein kinase TERM 2320 1907232 - 1907265 + T 100 -12 -4.16205 | opp_overlap 1907235 ACTCCATACTCCTAA GTATCCACTTTTAA ACTTAA TTAAGAGTGGATAC TTTAATTTGATTATA Shewana3_1620 1908216 - 1907308 - | ABC transporter related Shewana3_1621 1909043 - 1908213 - | hypothetical protein Shewana3_1622 1909787 - 1909131 - | hypothetical protein TERM 2321 1909834 - 1909807 - R 100 -12.8 -5.63517 | opp_overlap 1909803 1909807 GCTCCAAAGAAAAAA GCATGGCTTTGT TATA ACAGAGCCATGC TTAATATCCTAGCGC TERM 2322 1909807 - 1909834 + r 100 -15 -3.29471 | opp_overlap 1909807, overlap 1909803 GCTCCAAAGAAAAAA GCATGGCTTTGT TATA ACAGAGCCATGC TTAATATCCTAGCGC Shewana3_1623 1910793 - 1909954 - | hypothetical protein TERM 2323 1913379 - 1913366 - g 72 -9.5 -3.48276 | GTCTGGTTTAGACAA GGCGC CAGA GCGCC GTGCCGTGATGCTGG Shewana3_1624 1911885 - 1913798 + | arginine decarboxylase TERM 2324 1913818 - 1913843 + F 100 -14.1 -5.54907 | opp_overlap 1913818 GAGTGTGTTAAAAAA GTCAGCCTAGG GACA CTTAGGCTGAC TTTTTGTTTTATGGC TERM 2325 1913843 - 1913818 - f 100 -11.9 -5.0133 | opp_overlap 1913818 GAGTGTGTTAAAAAA GTCAGCCTAGG GACA CTTAGGCTGAC TTTTTGTTTTATGGC Shewana3_1625 1914094 - 1915029 + | S-adenosylmethionine decarboxylase TERM 2326 1915111 - 1915152 + F 70 -9.8 -2.56596 | gap 1, opp_overlap 1915115 1915121, overlap 1915121 TTAAGCGCTGGATTA TCAATAA-AAAGCTAAGGT TATCT GCCTTGGCTTTTTTATTGA TGGCTTAATAACAGA TERM 2327 1915121 - 1915141 + F 87 -5.4 -5.5112 | opp_overlap 1915115 1915121, overlap 1915111 GATTATCAATAAAAA GCTAAGGT TATCT GCCTTGGC TTTTTTATTGATGGC TERM 2328 1915141 - 1915121 - f 73 -2.5 -5.15167 | opp_overlap 1915121 1915111, overlap 1915115 GATTATCAATAAAAA GCTAAGG TTATCTG CCTTGGC TTTTTTATTGATGGC Shewana3_1626 1915257 - 1915895 + | pyridoxamine 5'-phosphate oxidase Shewana3_1627 1915914 - 1916366 + | hypothetical protein TERM 2329 1916916 - 1916903 - g 71 -5.3 -4.57581 | ATGGCAAACAACAAA CGAAA ACTT TTTCG GTAATTTTAACCAAA Shewana3_1628 1916518 - 1917093 + | YceI family protein Shewana3_1629 1917254 - 1917610 + | hypothetical protein Shewana3_1630 1917977 - 1918360 + | hypothetical protein Shewana3_1631 1918551 - 1919516 + | hypothetical protein Shewana3_1632 1922166 - 1919548 - | multi-sensor signal transduction histidine kinase TERM 2330 1919666 - 1919677 + g 74 -4.4 -4.75309 | overlap 1919659 ATGCAAGTCAGTGTG CCAA TACA TTGG TTTTGTTGCATTTCC TERM 2331 1920330 - 1920343 + g 73 -3.1 -5.06116 | gap 1 TAAGCAGGCTTAATT GC-GCT TGC AGCAGC TTTTCTTGTTCTTTT TERM 2332 1922317 - 1922293 - R 100 -13 -4.57837 | opp_overlap 1922309 AGAGGTCGTTAAAAA TAAGGCAGAC CTCAT GTCTGCCTTA GGAAGATTATTGATG Shewana3_1633 1922864 - 1922337 - | disulphide bond formation protein DsbB TERM 2333 1922915 - 1922883 - R 72 -9.3 -3.15579 | opp_overlap 1922890 1922913, overlap 1922890 TGAACTCCGTATCAA CAAAAAACGCCCT CGAAGGT AGGGCGTTTTTTT GACTTTACTGAACTC TERM 2334 1922908 - 1922890 - R 95 -7.4 -5.5112 | opp_overlap 1922890, overlap 1922883 CGTATCAACAAAAAA CGCCCT CGAAGGT AGGGCG TTTTTTTGACTTTAC TERM 2335 1922890 - 1922908 + r 95 -7.4 -5.58209 | opp_overlap 1922890 1922883 CGTATCAACAAAAAA CGCCCT CGAAGGT AGGGCG TTTTTTTGACTTTAC nhaB 1924561 - 1922960 - | sodium/proton antiporter Shewana3_1635 1924865 - 1925590 + | fatty acid metabolism regulator TERM 2336 1925651 - 1925671 + T 100 -11.2 -5.1971 | opp_overlap 1925651 CTGGTTAAATAAAAA GCCGTTTC ATTGA GAAACGGC TTTTTGCTTTTTAAT TERM 2337 1925671 - 1925651 - T 100 -11.2 -5.27335 | opp_overlap 1925651 CTGGTTAAATAAAAA GCCGTTTC ATTGA GAAACGGC TTTTTGCTTTTTAAT Shewana3_1636 1927224 - 1925698 - | hypothetical protein TERM 2338 1926327 - 1926313 - G 71 -7.8 -3.98236 | AAACTCCATCATAAA GCGGTC GGT GACCAC GCCATCATCGTATAG Shewana3_1637 1928508 - 1927234 - | hypothetical protein TERM 2339 1927638 - 1927648 + g 70 -2.4 -4.91712 | GGTGGCGGATATGGA CCAC CTC GAGG TTTTTGTAGGTTCGG TERM 2340 1927927 - 1927947 + g 86 -6.9 -4.96773 | AAGCTCCGCCAGTTC TTGCTCTAA CTC TTTGAGCAA TTTCTTTTTACTTGC TERM 2341 1928523 - 1928550 + r 100 -10.7 -4.72272 | gap 1, opp_overlap 1928527, overlap 1928527 CCTCCCAAACCCCAG CGAAGGCTTTGG CAACA CCAAAGCC-TCG TTTTTAGTGAGCGCA TERM 2342 1928527 - 1928547 + r 81 -11.2 -3.28472 | opp_overlap 1928527, overlap 1928523 CCAAACCCCAGCGAA GGCTTTGG CAACA CCAAAGCC TCGTTTTTAGTGAGC TERM 2343 1928547 - 1928527 - R 86 -11.9 -3.08966 | opp_overlap 1928527 1928523 CCAAACCCCAGCGAA GGCTTTGGC AAC ACCAAAGCC TCGTTTTTAGTGAGC Shewana3_1638 1930502 - 1928568 - | putative serine protein kinase, PrkA TERM 2344 1928595 - 1928618 + g 78 -3.8 -5.21709 | opp_overlap 1928572 1928595 1928598, overlap 1928598 1928599 ACGAACCCGTAAATA CCACTCAGAC AGCA GTCTGACTTG TTTTTTGGTATAGCC TERM 2345 1930637 - 1930616 - R 75 -2.3 -5.37171 | opp_overlap 1930629 1930635 1930636, overlap 1930626 1930629 1930630 AATATCAAATAAAAA CAATAACAA ATGA TTGCAATTG CAATTATTGCACTTG TERM 2346 1930715 - 1930729 + r 81 -7.1 -4.60041 | opp_overlap 1930715 GAGGCCATAAAAAAA GAGCC ACTTG GGCTC TTTTTAGGAATGACT TERM 2347 1930729 - 1930715 - R 100 -7.1 -5.626 | opp_overlap 1930715 GAGGCCATAAAAAAA GAGCC ACTTG GGCTC TTTTTAGGAATGACT Shewana3_1639 1931338 - 1930754 - | manganese and iron superoxide dismutase Shewana3_1640 1931565 - 1931897 + | glutaredoxin-like protein TERM 2348 1931932 - 1931956 + T 100 -10.8 -5.4833 | opp_overlap 1931932 AAGAATAATAAAAAA GCCGTTAAGT GAATA ACTTAGCGGC TTTTTTGTTGCCTGC TERM 2349 1931956 - 1931932 - T 100 -8.6 -5.70522 | opp_overlap 1931932 AAGAATAATAAAAAA GCCGTTAAGT GAATA ACTTAGCGGC TTTTTTGTTGCCTGC Shewana3_1641 1933265 - 1932027 - | uracil-xanthine permease Shewana3_1642 1933481 - 1934563 + | hypothetical protein TERM 2350 1935050 - 1935082 + G 71 -7.5 -3.97307 | opp_overlap 1935017, overlap 1935049 CGTTGTGCGCTGGTG GTCAGCGGCCGCTCG GCG CCCGCGGATGCTGGC TTCTTGTTACCTGAC Shewana3_1643 1934642 - 1935352 + | DNA replication initiation factor TERM 2351 1935413 - 1935433 + F 100 -16.9 -5.46276 | opp_overlap 1935413 TAGTGTTAACAAAAA GCCCGTCGT ATC ACGACGGGC TTTTTTATCTCTATT TERM 2352 1935433 - 1935413 - f 100 -16.9 -5.07486 | opp_overlap 1935413 TAGTGTTAACAAAAA GCCCGTCGT ATC ACGACGGGC TTTTTTATCTCTATT TERM 2353 1935466 - 1935496 + F 74 -10.6 -2.62192 | opp_overlap 1935465 1935463 1935466, overlap 1935465 CCCGTCCTGAAATAC GTTGACATAAAGAG GAT TTCTTTATGACAAC ATTAATTAACTCAAG TERM 2354 1935496 - 1935466 - f 71 -9.9 -2.60496 | opp_overlap 1935466 1935465, overlap 1935465 1935463 CCCGTCCTGAAATAC GTTGACATAAAGA GGATT TCTTTATGACAAC ATTAATTAACTCAAG Shewana3_1644 1935489 - 1935884 + | transposase TERM 2355 1936208 - 1936158 - g 70 -2.6 -5.01546 | gap 1, opp_overlap 1936176 AAAGCTACACAAAAA CCACGTTCAGCAAACACTGGATG AAGAAG CATCCTA-ATCTGCTGAAAGAGG AGGGACTGCACGATG TERM 2356 1936483 - 1936503 + G 79 -11.1 -3.54029 | opp_overlap 1936483 1936482 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA TERM 2357 1936503 - 1936483 - g 71 -11.1 -2.79327 | opp_overlap 1936483, overlap 1936482 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA Shewana3_1645 1935914 - 1936717 + | integrase catalytic subunit TERM 2358 1936714 - 1936694 - T 100 -12.6 -4.73682 | GTGCACAATAGAAAA GGCCAGCT ACTGG AGCTGGCC TAAAAACTGTCAACC Shewana3_1646 1938744 - 1936816 - | hypothetical protein TERM 2359 1939064 - 1939031 - R 100 -12.4 -4.65263 | opp_overlap 1939033, overlap 1939033 ACTTCTCAAAACAAA GAGCGCGGATCGGT ATTAAA ACCGAACCGCGCTT GCTCATCGGCACTGG TERM 2360 1939062 - 1939033 - R 100 -15 -3.93868 | opp_overlap 1939033, overlap 1939031 TTCTCAAAACAAAGA GCGCGGATCGGT ATTAAA ACCGAACCGCGC TTGCTCATCGGCACT TERM 2361 1939033 - 1939062 + r 100 -15 -3.21218 | opp_overlap 1939033 1939031 TTCTCAAAACAAAGA GCGCGGATCGGT ATTAAA ACCGAACCGCGC TTGCTCATCGGCACT Shewana3_1647 1939513 - 1939133 - | hypothetical protein Shewana3_1648 1939911 - 1939561 - | arsenate reductase TERM 2362 1939992 - 1939964 - R 91 -7.4 -5.34555 | opp_overlap 1939964 1939965, overlap 1939966 TGATAGCAGAAAAAA CAGCGCCCCG-TCA GGG TGTTCGGGGCGC-G ATTATAAGGGATAGA TERM 2363 1939991 - 1939966 - R 100 -11.1 -4.30057 | gap 1, opp_overlap 1939965 1939964, overlap 1939964 ATAGCAGAAAAAACA GCGCCCCG-TCA GGG TGTTCGGGGCGC GATTATAAGGGATAG Shewana3_1649 1941492 - 1940023 - | peptidase M48, Ste24p TERM 2364 1940994 - 1941020 + g 83 -5 -5.16237 | overlap 1941007 ATAAAATCGCCCCCA GTAGTCCTGCAA CGG TCGCTGGACCAC TTTTTTGCTGCGCTT TERM 2365 1941223 - 1941208 - G 80 -4.6 -5.18297 | TAAGAAGAAATAAAA GGGCGT TTTG ACTCCC GTGGCATGGGCGACC Shewana3_1650 1941605 - 1941838 + | SirA family protein Shewana3_1651 1942047 - 1943147 + | hypothetical protein TERM 2366 1943200 - 1943183 - T 86 -2.6 -5.82172 | opp_overlap 1943183, overlap 1943175 ACGAATAGAAAAAAA CTGGGC CTGAGT GCTCAG TTTTTTGTCCGCTAA TERM 2367 1943183 - 1943200 + T 82 -4.8 -5.26316 | opp_overlap 1943183 1943175 ACGAATAGAAAAAAA CTGGGC CTGAGT GCTCAG TTTTTTGTCCGCTAA Shewana3_1652 1944176 - 1943259 - | chromosome replication initiation inhibitor protein Shewana3_1653 1944289 - 1944903 + | lysine exporter protein LysE/YggA TERM 2368 1944992 - 1945008 + T 100 -9.4 -4.74504 | opp_overlap 1944992 TTTTTCATGAAAAAA GGCCCT GATAA AGGGCC TTTTTGCGTTCAACT TERM 2369 1945008 - 1944992 - T 100 -9.4 -5.14563 | opp_overlap 1944992 TTTTTCATGAAAAAA GGCCCT GATAA AGGGCC TTTTTGCGTTCAACT bcp 1945551 - 1945084 - | thioredoxin-dependent thiol peroxidase TERM 2370 1945421 - 1945394 - G 77 -10.6 -3.64703 | gap 1 TTGCTGTCACGTAAA CCACAGGCTTGCA CTG TGCA-GCCTGGGG TTGAAGCCTTAGGGT Shewana3_1655 1946106 - 1945555 - | glycine cleavage system transcriptional repressor, putative Shewana3_1656 1946279 - 1947163 + | dihydrodipicolinate synthase Shewana3_1657 1947167 - 1948264 + | NlpB/DapX family lipoprotein TERM 2371 1948299 - 1948284 - f 100 -10.4 -5.09225 | opp_overlap 1948284 ATCTCAGTCAAAAAA GGGCGA TTTA TCGCCC TTTTTTGTGCCTGCC TERM 2372 1948284 - 1948299 + F 100 -10.4 -5.28176 | opp_overlap 1948284 ATCTCAGTCAAAAAA GGGCGA TTTA TCGCCC TTTTTTGTGCCTGCC Shewana3_1658 1948635 - 1949717 + | RND family efflux transporter MFP subunit Shewana3_1659 1949714 - 1952809 + | acriflavin resistance protein TERM 2373 1952829 - 1952866 + T 100 -17.3 -3.73402 | opp_overlap 1952834, overlap 1952834 TCGCGAACGCTTAGC CAAAATAGGCGCTTAAG TACA CTTAAGCGCCTATTTTA TTTGGTGAACACTCT TERM 2374 1952861 - 1952834 - T 100 -17.2 -4.18762 | opp_overlap 1952829 1952834 AACGCTTAGCCAAAA TAGGCGCTTAAG TACA CTTAAGCGCCTA TTTTATTTGGTGAAC TERM 2375 1952834 - 1952861 + T 100 -17.2 -4.93877 | opp_overlap 1952834, overlap 1952829 AACGCTTAGCCAAAA TAGGCGCTTAAG TACA CTTAAGCGCCTA TTTTATTTGGTGAAC Shewana3_1660 1953318 - 1952884 - | GCN5-related N-acetyltransferase Shewana3_1661 1954001 - 1953318 - | negative transcriptional regulator TERM 2376 1953758 - 1953773 + g 76 -7.6 -4.39166 | GGCCATCAAGCTGCT GCCAAT GCCC ATTGGC TTTTGCTATATGACC Shewana3_1662 1954829 - 1954074 - | hypothetical protein TERM 2377 1954138 - 1954126 - G 82 -6.9 -4.85396 | ACAAGCACAATAAAA CCCCG CAA CAGGG ATTGGGGAATGCGAT TERM 2378 1954920 - 1954955 + r 70 -5.6 -4.32579 | gap 1, opp_overlap 1954920 TTAGTCAGATGAAAA GCCATCAATATTGCT AAGTAGC GGCAG-ATTGATGGC TTTGTTATAGGGTCT Shewana3_1663 1955366 - 1955055 - | hypothetical protein Shewana3_1664 1956004 - 1955402 - | ThiJ/PfpI domain-containing protein Shewana3_1665 1957143 - 1956112 - | hypothetical protein TERM 2379 1957436 - 1957416 - R 100 -11.2 -5.24551 | opp_overlap 1957416 TCAAAGCAATAAAAA GCCCAGAA TCCTC TTCTGGGC TTTTTAAAACTAAAA TERM 2380 1957416 - 1957436 + r 100 -11.2 -4.59773 | opp_overlap 1957416 TCAAAGCAATAAAAA GCCCAGAA TCCTC TTCTGGGC TTTTTAAAACTAAAA Shewana3_1666 1958205 - 1957549 - | butyryl-CoA:acetate CoA transferase Shewana3_1667 1959019 - 1958315 - | 3-oxoacid CoA-transferase, A subunit TERM 2381 1958678 - 1958691 + g 74 -3.7 -5.00616 | opp_overlap 1958673, overlap 1958675 1958679 TGCCGGAATACCTGC ACCGC CGGC GCGGA TTTTTTCCGCCAGCG Shewana3_1668 1960020 - 1959088 - | hydroxymethylglutaryl-CoA lyase Shewana3_1669 1962045 - 1960021 - | 3-methylcrotonoyl-CoA carboxylase, alpha subunit TERM 2382 1960116 - 1960141 + g 71 -10.5 -3.16217 | opp_overlap 1960106 1960118, overlap 1960114 1960118 1960135 AGAACTCGGTAACGA TACCGTCGAAG GGCG CTTCGATGGTG TATTCCATCTTCATC TERM 2383 1960118 - 1960139 + g 71 -10.9 -3.136 | opp_overlap 1960106 1960118, overlap 1960116 1960114 1960135 AACTCGGTAACGATA CCGTCGAAG GGCG CTTCGATGG TGTATTCCATCTTCA TERM 2384 1961907 - 1961932 + g 82 -6.8 -4.84359 | CTAAGTAAAACGATT CGTCGGCCAT AGCAAC ATGGCGGGCG TTTTTATCGGCATCG Shewana3_1670 1962905 - 1962045 - | methylglutaconyl-CoA hydratase TERM 2385 1962144 - 1962160 + g 70 -11.5 -2.66964 | opp_overlap 1962137, overlap 1962145 ATCAGATACCCGAAT GCGGGCG ATG CGCTCGC TGGTGTAATCAATCG Shewana3_1671 1964557 - 1962950 - | carboxyl transferase TERM 2386 1963850 - 1963879 + g 74 -11.3 -3.14931 | overlap 1963850 AATTTTAGTGTGTAC GTCGGCGCCGCCG AGTT CTTCGGCGCTGAC TTCCTCACCGGTCGC Shewana3_1672 1965827 - 1964658 - | isovaleryl-CoA dehydrogenase TERM 2387 1964850 - 1964864 + g 70 -9.2 -3.6003 | opp_overlap 1964849 CGCGCTGTAAAGGAT GGCGCC TGC GGCGTC TTTACGGGTGGTTTC Shewana3_1673 1966385 - 1965981 - | MerR family transcriptional regulator TERM 2388 1966313 - 1966303 - G 71 -5.4 -4.56597 | opp_overlap 1966293 TGGTCTTCGTAAAAA CGAA TGC TTCG GGTCGTGATATCAAA Shewana3_1674 1968341 - 1966659 - | peptidoglycan binding domain-containing protein TERM 2389 1970379 - 1970363 - g 71 -7.3 -4.12188 | GCACTATGCGTAAAA TTGCCGA CAA TCAGCAA TATACGGCGCCAGCG Shewana3_1675 1968553 - 1970475 + | AMP-dependent synthetase and ligase TERM 2390 1970529 - 1970566 + F 100 -12.1 -5.07652 | opp_overlap 1970529 TACAGCCAAGATAAA GCGATAGTCCGATGAGA GCAG TCCCATCTGATTATCGC TTTTATTTTGCGGAA TERM 2391 1970566 - 1970529 - f 100 -12.1 -4.22678 | opp_overlap 1970529 TACAGCCAAGATAAA GCGATAGTCCGATGAGA GCAG TCCCATCTGATTATCGC TTTTATTTTGCGGAA Shewana3_1676 1970798 - 1971112 + | small multidrug resistance protein Shewana3_1677 1971340 - 1972866 + | 6-phosphogluconate dehydrogenase TERM 2392 1972875 - 1972904 + F 100 -14.5 -3.44891 | opp_overlap 1972881 1972882, overlap 1972882 ACTCTAGATAAATTG TAAAAAGGCCCCT AAAT AGGGGCTTTTTTA TTGCTTGGCTTTATT TERM 2393 1972898 - 1972881 - f 79 -6.9 -4.72486 | opp_overlap 1972875 1972882, overlap 1972882 GATAAATTGTAAAAA GGCCCCT AAAT AGGGGCT TTTTTATTGCTTGGC TERM 2394 1972882 - 1972897 + F 100 -10.4 -5.5604 | opp_overlap 1972881 1972882, overlap 1972875 ATAAATTGTAAAAAG GCCCCT AAAT AGGGGC TTTTTTATTGCTTGG TERM 2395 1972897 - 1972882 - f 80 -10.4 -3.42407 | opp_overlap 1972882 1972875, overlap 1972881 ATAAATTGTAAAAAG GCCCCT AAAT AGGGGC TTTTTTATTGCTTGG Shewana3_1678 1973404 - 1975521 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 2396 1975814 - 1975824 + G 71 -6.8 -4.25104 | TTAAAACCTGGTGTG TCGG CTG CCGA TTTTGCTAAGGCCCA Shewana3_1679 1975532 - 1975996 + | hypothetical protein TERM 2397 1976042 - 1976021 - f 95 -13.1 -3.19026 | opp_overlap 1976021 1976025, overlap 1976025 TAGGTTAACATCGAA TAAAGGGCC GCAA GGCCCTTTA TTATTCTGATGGTCT TERM 2398 1976021 - 1976042 + F 100 -13.1 -3.86266 | opp_overlap 1976021 1976025, overlap 1976025 TAGGTTAACATCGAA TAAAGGGCC GCAA GGCCCTTTA TTATTCTGATGGTCT TERM 2399 1976038 - 1976025 - f 88 -9.5 -4.254 | opp_overlap 1976021 1976025, overlap 1976021 TTAACATCGAATAAA GGGCC GCAA GGCCC TTTATTATTCTGATG TERM 2400 1976025 - 1976038 + F 95 -9.5 -4.53419 | opp_overlap 1976025 1976021, overlap 1976021 TTAACATCGAATAAA GGGCC GCAA GGCCC TTTATTATTCTGATG Shewana3_1680 1976251 - 1976961 + | hypothetical protein Shewana3_1681 1977071 - 1977598 + | hypothetical protein Shewana3_1682 1977852 - 1978187 + | hypothetical protein Shewana3_1683 1979156 - 1978257 - | LysR family transcriptional regulator TERM 2401 1979282 - 1979256 - H 81 -11.6 -2.85351 | opp_overlap 1979256 TTCCGCCATATGACA GTAGTGGGCTCA ATG CGAGTCCACTAC TTTGCGTTTAGGGTG TERM 2402 1979256 - 1979282 + H 100 -13.1 -3.85165 | opp_overlap 1979256 TTCCGCCATATGACA GTAGTGGGCTC AATGC GAGTCCACTAC TTTGCGTTTAGGGTG Shewana3_1684 1979356 - 1979835 + | hypothetical protein TERM 2403 1980564 - 1980576 + G 71 -10.5 -3.04398 | overlap 1980563 ATCGATTGGCAATCG GCGCC AGA GGCGC GTTTTAGCCACCCAA Shewana3_1685 1979907 - 1980716 + | extradiol ring-cleavage dioxygenase III subunit B TERM 2404 1980729 - 1980781 + T 100 -15 -4.12456 | opp_overlap 1980730 1980731 1980736, overlap 1980731 1980736 TAATTTGCCCCTAAA AGCAAAAGGTTCGTCATGTTGCGT ATTAA ACGCTTCGTGACGAACCTTTTGTA TTTTAAGCCTGGTCT TERM 2405 1980780 - 1980730 - T 100 -14.1 -4.08064 | opp_overlap 1980729 1980731 1980736, overlap 1980731 1980736 AATTTGCCCCTAAAA GCAAAAGGTTCGTCATGTTGCGT ATTAA ACGCTTCGTGACGAACCTTTTGT ATTTTAAGCCTGGTC TERM 2406 1980779 - 1980731 - T 100 -17.6 -3.04517 | opp_overlap 1980729 1980731 1980736, overlap 1980730 1980736 ATTTGCCCCTAAAAG CAAAAGGTTCGTCATGTTGCGT ATTAA ACGCTTCGTGACGAACCTTTTG TATTTTAAGCCTGGT TERM 2407 1980731 - 1980779 + T 100 -19.8 -3.6581 | opp_overlap 1980731 1980730 1980736, overlap 1980729 1980736 ATTTGCCCCTAAAAG CAAAAGGTTCGTCATGTTGCGT ATTAA ACGCTTCGTGACGAACCTTTTG TATTTTAAGCCTGGT TERM 2408 1980736 - 1980774 + T 100 -13.9 -4.89567 | opp_overlap 1980731 1980730 1980736, overlap 1980731 1980729 CCCCTAAAAGCAAAA GGTTCGTCATGTTGCGT ATTAA ACGCTTCGTGACGAACC TTTTGTATTTTAAGC TERM 2409 1980774 - 1980736 - T 100 -11.7 -4.67038 | opp_overlap 1980736 1980731 1980729, overlap 1980731 1980730 CCCCTAAAAGCAAAA GGTTCGTCATGTTGCGT ATTAA ACGCTTCGTGACGAACC TTTTGTATTTTAAGC TERM 2410 1980807 - 1980821 + T 88 -7 -5.09225 | overlap 1980809 GGTCTATTTTACTAG CCGCCC TGT GGGCAG TTTTTTAACTCAACT Shewana3_1686 1981744 - 1980869 - | 1,4-dihydroxy-2-naphtoate prenyltransferase TERM 2411 1981543 - 1981556 + g 70 -4.5 -4.62069 | GACCAATACGTTCGG CGGTA TCAA TGCCG TTTTTAAAGTCAAAG TERM 2412 1982724 - 1982740 + G 76 -6.5 -4.58773 | ATAAACACTTAGCGC CAGCGAT TCA ACCGCTG TTTTCCTTTGATACG Shewana3_1687 1982069 - 1983022 + | short-chain dehydrogenase/reductase SDR Shewana3_1688 1983137 - 1984003 + | acyl-CoA thioesterase II TERM 2413 1984151 - 1984129 - g 73 -2.7 -5.03314 | gap 1, opp_overlap 1984144, overlap 1984130 GCTATTTGGAAAAAA TTCTCCTGCC CCAA GGCAGT-GAA ATTACCATTGCTATT Shewana3_1689 1984005 - 1984409 + | hypothetical protein TERM 2414 1984476 - 1984462 - f 73 -7.1 -4.1899 | opp_overlap 1984462 GCATTTTATCGAAAA GGGGA GTTAA TCCCC TTTTTTATTGCTTGT TERM 2415 1984462 - 1984476 + F 95 -7.1 -5.57396 | opp_overlap 1984462 GCATTTTATCGAAAA GGGGA GTTAA TCCCC TTTTTTATTGCTTGT TERM 2416 1987066 - 1987096 + G 71 -10.4 -3.06492 | TCGGGCACTTCAATG GCAAGCCCGCAT GTTGCGG GTGCGGGCTCGC TGTTAAAGTCACTGC Shewana3_1690 1985098 - 1989000 + | protease domain-containing protein TERM 2417 1989042 - 1989078 + T 100 -13.2 -4.20025 | gap 1, opp_overlap 1989051, overlap 1989045 1989051 TAAACGTTAGGTGAC GCATTAAAA-GGGCCGA GCAA TCGGCCCTTTTTATTGC TTTGTGTTAACGGTT TERM 2418 1989045 - 1989074 + T 100 -13.7 -3.69341 | opp_overlap 1989051, overlap 1989042 1989051 ACGTTAGGTGACGCA TTAAAAGGGCCGA GCAA TCGGCCCTTTTTA TTGCTTTGTGTTAAC TERM 2419 1989068 - 1989051 - T 100 -12.7 -4.2828 | opp_overlap 1989045 1989042 1989051 GGTGACGCATTAAAA GGGCCGA GCAA TCGGCCC TTTTTATTGCTTTGT TERM 2420 1989051 - 1989068 + T 100 -12.7 -5.25906 | opp_overlap 1989051, overlap 1989045 1989042 GGTGACGCATTAAAA GGGCCGA GCAA TCGGCCC TTTTTATTGCTTTGT Shewana3_1691 1989966 - 1989085 - | LysR family transcriptional regulator TERM 2421 1989967 - 1989977 + H 70 -5.4 -4.4767 | TTGGCGTATATCCAT GATG ATT CATC TTTTATGCTGGATGG TERM 2422 1990418 - 1990436 + G 71 -5.9 -4.29928 | overlap 1990432 GCTTATCCTTTCGGT CACCAGC TTTTC GCTGGCG TTTTCGCTGTTAATT Shewana3_1692 1990179 - 1991489 + | Xaa-His dipeptidase TERM 2423 1991548 - 1991569 + F 100 -11.6 -4.84359 | TTTGATGAACGCTTA GGCCAACG ACTCCC CGTTGGCC TTTTTGTACACCTAA Shewana3_1693 1991972 - 1992889 + | putative signal peptide protein TERM 2424 1992896 - 1992924 + F 73 -8.2 -3.66908 | gap 1, overlap 1992901 TATCTGTAATTTAGC TCATGGGCCAGCG CTTT TGCTGGCCT-TGA TTCGTTTTCGCAGAA TERM 2425 1992901 - 1992920 + F 89 -11.4 -3.54177 | overlap 1992896 GTAATTTAGCTCATG GGCCAGCG CTTT TGCTGGCC TTGATTCGTTTTCGC TERM 2426 1993623 - 1993646 + G 72 -3.8 -4.87807 | gap 1, opp_overlap 1993613, overlap 1993623 1993624 1993626 AGTAAGCGCAGCGAT G-CGCTCGAAC TGG GTGCGAGTGAC TTTTTGATCTCTTCA Shewana3_1694 1992984 - 1994030 + | alcohol dehydrogenase Shewana3_1695 1994139 - 1994576 + | cupin 2 domain-containing protein TERM 2427 1994638 - 1994611 - T 72 -6.4 -4.27584 | gap 1, opp_overlap 1994616, overlap 1994616 ACTCGGAATTTAAAA TAAAAGGCGA-AC TCA GTGTCGCCTTTTT TGCTTTTGATGTTTT TERM 2428 1994633 - 1994616 - T 87 -6.3 -5.13343 | gap 1, opp_overlap 1994616, overlap 1994611 GAATTTAAAATAAAA GGCGA-AC TCA GTGTCGCC TTTTTTGCTTTTGAT TERM 2429 1994616 - 1994633 + T 91 -6.3 -5.48054 | gap 1, opp_overlap 1994616 1994611 GAATTTAAAATAAAA GGCGA-AC TCA GTGTCGCC TTTTTTGCTTTTGAT Shewana3_1696 1995053 - 1994679 - | hypothetical protein TERM 2430 1994869 - 1994894 + g 70 -8.1 -3.79021 | overlap 1994860 1994857 1994859 1994892 ATATCGCCACGCTTA GCGCTGGTGCC TTTG GGGGCCTGCGC TTTGGTGAGCTTTTG Shewana3_1697 1995674 - 1995135 - | cupin 2 domain-containing protein Shewana3_1698 1995884 - 1996792 + | AraC family transcriptional regulator TERM 2431 1997084 - 1997071 - f 70 -8.1 -3.60948 | CAAGAGACTGCTAAA GTGGC GAGA GCCAC AGACTGGATTTGATG Shewana3_1699 1997135 - 1998697 + | MATE efflux family protein TERM 2432 1998785 - 1998740 - T 77 -5 -4.92363 | gap 2, opp_overlap 1998749 1998755, overlap 1998748 1998749 1998751 1998755 AAAGAGTCATAAAAA TTCATAAAGCATAAAGGCCACT GAAA AGTGGCCTTTATG-TTTG-GTA TGTTCGCATTCACGC TERM 2433 1998779 - 1998748 - T 100 -14.6 -4.10363 | opp_overlap 1998749 1998755, overlap 1998740 1998749 1998751 1998755 ATAAAAATTCATAAA GCATAAAGGCCACT GAAA AGTGGCCTTTATGT TTGGTATGTTCGCAT TERM 2434 1998749 - 1998778 + T 100 -18.1 -3.93262 | opp_overlap 1998748 1998740 1998749 1998751 1998755, overlap 1998755 TAAAAATTCATAAAG CATAAAGGCCACT GAAA AGTGGCCTTTATG TTTGGTATGTTCGCA TERM 2435 1998778 - 1998749 - T 100 -18.1 -3.04591 | opp_overlap 1998749 1998755, overlap 1998748 1998740 1998751 1998755 TAAAAATTCATAAAG CATAAAGGCCACT GAAA AGTGGCCTTTATG TTTGGTATGTTCGCA TERM 2436 1998776 - 1998751 - T 100 -14.9 -3.05876 | opp_overlap 1998749 1998755, overlap 1998749 1998748 1998740 1998755 AAAATTCATAAAGCA TAAAGGCCACT GAAA AGTGGCCTTTA TGTTTGGTATGTTCG TERM 2437 1998772 - 1998755 - T 100 -11.3 -4.17701 | opp_overlap 1998749 1998755, overlap 1998751 1998749 1998748 1998740 TTCATAAAGCATAAA GGCCACT GAAA AGTGGCC TTTATGTTTGGTATG TERM 2438 1998755 - 1998772 + T 100 -11.3 -4.3851 | opp_overlap 1998755 1998751 1998749 1998748 1998740, overlap 1998749 TTCATAAAGCATAAA GGCCACT GAAA AGTGGCC TTTATGTTTGGTATG Shewana3_1700 1999071 - 1998853 - | hypothetical protein TERM 2439 1999290 - 1999303 + H 70 -3.9 -4.84363 | opp_overlap 1999290 TACCCATTTAACGTA TTGAT AGTC ATCAA TTTTTAATGCTTTAA Shewana3_1701 1999340 - 1999672 + | hypothetical protein TERM 2440 1999754 - 1999785 + T 95 -11.7 -3.82946 | opp_overlap 1999754 TCTGTTTATAAAAAA TAGGCTGGCTTGT TTTGAT GCAAGTCAGCCTA TTATCTTTCAAGTGG TERM 2441 1999785 - 1999754 - T 100 -8.8 -5.24129 | opp_overlap 1999754 TCTGTTTATAAAAAA TAGGCTGGCTTG TTTTGATG CAAGTCAGCCTA TTATCTTTCAAGTGG Shewana3_1702 2002888 - 1999832 - | acriflavin resistance protein TERM 2442 2001020 - 2001030 + g 70 -2.4 -5.03961 | opp_overlap 2001015, overlap 2001015 GGAGAATTTAGGAAA ACCG CTG CGGA TTTTCTTCTTTAATT TERM 2443 2002387 - 2002405 + g 70 -8.1 -3.70571 | gap 1, opp_overlap 2002381, overlap 2002391 2002393 CTTTAGACACCCCCT CGACCCGC TCCA GCGGG-CG TTTGAGCTGTTTATC Shewana3_1703 2006148 - 2002885 - | acriflavin resistance protein TERM 2444 2004483 - 2004470 - G 76 -6.7 -4.45261 | TAAACAAAGTTAAAA CCACT GCTC AGTGG GCGCATCACTAATCC TERM 2445 2004640 - 2004650 + g 70 -4.6 -4.731 | CTTAGTAGTGGGTTT CTCC TTC GGGG TTTTCTTGATGAGTT Shewana3_1704 2007225 - 2006161 - | RND family efflux transporter MFP subunit TERM 2446 2007491 - 2007477 - R 100 -12.8 -5.4756 | opp_overlap 2007477 AATCCCAATAAAAAA GCGCCC AGT GGGCGC TTTTAATCGATAAAT TERM 2447 2007477 - 2007491 + r 100 -12.8 -4.28548 | opp_overlap 2007477 AATCCCAATAAAAAA GCGCCC AGT GGGCGC TTTTAATCGATAAAT gltA 2008798 - 2007512 - | type II citrate synthase TERM 2448 2007847 - 2007866 + g 74 -4.3 -4.82901 | AGGTTTCACGCATCA CTTTGGC ACGTGG GTCAAAG TTTTTGTAAACACGG TERM 2449 2008994 - 2008979 - H 80 -2.6 -5.42862 | ATATCCTTAAAAAAA CAAAAT TTGC ATTCTG TGATGTTTGTATTTG TERM 2450 2009222 - 2009209 - H 93 -2.3 -6.19302 | overlap 2009210 2009211 ACATAACAAAAAAAA TGCTC AATG GAGCT GAGTGAGCAGAACGT TERM 2451 2009221 - 2009210 - H 70 -5.8 -4.27921 | overlap 2009209 2009211 CATAACAAAAAAAAT GCTC AATG GAGC TGAGTGAGCAGAACG Shewana3_1706 2009215 - 2009610 + | succinate dehydrogenase subunit C Shewana3_1707 2009604 - 2009951 + | succinate dehydrogenase subunit D sdhA 2009952 - 2011718 + | succinate dehydrogenase flavoprotein subunit sdhB 2011730 - 2012437 + | succinate dehydrogenase iron-sulfur subunit TERM 2452 2012481 - 2012510 + F 100 -10.1 -4.65446 | opp_overlap 2012473, overlap 2012473 AATATAGCTCTCGAA GAGTCACTTTCTG GGTA TAGAAGGTGGCTC TTTTGTGTATGTAAT kgd 2012652 - 2015471 + | alpha-ketoglutarate decarboxylase TERM 2453 2016023 - 2016003 - g 71 -11.1 -2.82623 | overlap 2016000 CCTGCGGTACAACCA CTCGCTGCG GGT CGTAGCGAG AAACGTGTTCCAATG TERM 2454 2016569 - 2016552 - g 73 -9.1 -3.74872 | ATGCACGCCATTAAA GACCGCC CAAT GGCAGTC AATGGTCAGGTTGAA Shewana3_1711 2015520 - 2016713 + | 2-oxoglutarate dehydrogenase E2 component TERM 2455 2016774 - 2016802 + F 77 -8.2 -3.91352 | gap 1, opp_overlap 2016771, overlap 2016780 GCGTCAGACATACCC TCGTGACTGGCCC CGTG GGGCCAGTTG-GA TTTGATTAGAAGTAT TERM 2456 2016780 - 2016797 + F 95 -12.7 -3.33399 | opp_overlap 2016771, overlap 2016774 GACATACCCTCGTGA CTGGCCC CGTG GGGCCAG TTGGATTTGATTAGA sucC 2016832 - 2017998 + | succinyl-CoA synthetase subunit beta Shewana3_1713 2017998 - 2018870 + | succinyl-CoA synthetase (ADP-forming) alpha subunit TERM 2457 2018893 - 2018907 + F 100 -12.8 -5.49234 | opp_overlap 2018893 GTTAACACACGAAAA GGCGCC TAA GGCGCC TTTTTTATTGCGTGT TERM 2458 2018907 - 2018893 - f 100 -12.8 -4.43213 | opp_overlap 2018893 GTTAACACACGAAAA GGCGCC TAA GGCGCC TTTTTTATTGCGTGT TERM 2459 2019147 - 2019161 + F 70 -2.8 -5.01546 | overlap 2019135 ACGCGATTGCGGCAT TAAGCT GCG AGCGTA TTTTTATATCGGTTT Shewana3_1714 2019250 - 2019657 + | GreA/GreB family elongation factor Shewana3_1715 2019689 - 2020201 + | GCN5-related N-acetyltransferase TERM 2460 2020214 - 2020260 + T 79 -11.1 -3.0281 | opp_overlap 2020229, overlap 2020229 TAACAGTGCCTGAGC GTTTCAATAAAAAAACCAGCC TAGAT GGCTGGTTTTTTTATTAGGCC TGTCTGGTTGATATC TERM 2461 2020245 - 2020229 - T 100 -9.4 -5.7946 | opp_overlap 2020214 2020229 GTTTCAATAAAAAAA CCAGCC TAGAT GGCTGG TTTTTTTATTAGGCC TERM 2462 2020229 - 2020245 + T 100 -9.4 -5.7946 | opp_overlap 2020229, overlap 2020214 GTTTCAATAAAAAAA CCAGCC TAGAT GGCTGG TTTTTTTATTAGGCC fur 2020726 - 2020295 - | ferric uptake regulator Shewana3_1717 2020983 - 2021726 + | NAD-dependent deacetylase Shewana3_1718 2021750 - 2022214 + | hypothetical protein TERM 2463 2022614 - 2022624 + G 82 -6.8 -4.77036 | GGCGCCGTTACGGCA TGCG GGG CGCA TTTTTACTGCTGGGG Shewana3_1719 2022478 - 2022840 + | hypothetical protein TERM 2464 2023006 - 2022993 - g 76 -8.1 -4.26076 | CTATGTCTACGAAAA CCGTC AACT GACGG TCACTGAGATTAACA Shewana3_1720 2022967 - 2023914 + | magnesium and cobalt transport protein CorA TERM 2465 2023971 - 2023939 - T 100 -14.3 -3.37259 | opp_overlap 2023947, overlap 2023941 2023947 AATGATTTCGAAAGA GACAAAAAGCCGGAG TCA CTCCGGCTTTTTATT GGGCAAATGAATCTC TERM 2466 2023969 - 2023941 - T 100 -16.9 -3.25204 | opp_overlap 2023947, overlap 2023939 2023947 TGATTTCGAAAGAGA CAAAAAGCCGGAG TCA CTCCGGCTTTTTA TTGGGCAAATGAATC TERM 2467 2023963 - 2023947 - T 100 -13.7 -5.14985 | opp_overlap 2023947, overlap 2023941 2023939 CGAAAGAGACAAAAA GCCGGAG TCA CTCCGGC TTTTTATTGGGCAAA TERM 2468 2023947 - 2023963 + T 100 -13.7 -5.06414 | opp_overlap 2023947 2023941 2023939 CGAAAGAGACAAAAA GCCGGAG TCA CTCCGGC TTTTTATTGGGCAAA Shewana3_1721 2025257 - 2023995 - | metal dependent phosphohydrolase Shewana3_1722 2025374 - 2026069 + | prolyl 4-hydroxylase, alpha subunit Shewana3_1723 2027434 - 2026085 - | ATPase domain-containing protein Shewana3_1724 2028108 - 2027425 - | two component transcriptional regulator TERM 2469 2027768 - 2027778 + g 71 -6.8 -4.15703 | ACTAAGGCGTCGAGT CTGG CAA CCAG TTCTTCTTTCTGGAA Shewana3_1725 2028620 - 2028273 - | hypothetical protein TERM 2470 2028725 - 2028741 + r 100 -12.3 -4.76041 | opp_overlap 2028725 AAGACAAATAAAAAA GCCCAAC TGA GTTGGGC TTTTTAGTAGATATA TERM 2471 2028741 - 2028725 - R 100 -12.3 -5.7827 | opp_overlap 2028725 AAGACAAATAAAAAA GCCCAAC TGA GTTGGGC TTTTTAGTAGATATA Shewana3_1726 2030090 - 2028777 - | sodium:dicarboxylate symporter TERM 2472 2029826 - 2029812 - G 80 -4.2 -5.09762 | TGTGAATAAATAAAA GGCTAA TGT TTTGCC GCCTAAACGACCTAA TERM 2473 2029909 - 2029890 - G 71 -5 -4.59212 | overlap 2029892 AACTAATGAAATAAA TACCAGTG GAAC CACTAGCA TTTTCAAACTTGAGA TERM 2474 2032137 - 2032150 + G 74 -6.7 -4.29325 | overlap 2032144 TAATTTACTTCCAGC TGGTG GTTC CACCA TTTTGGATGTTACTG TERM 2475 2033286 - 2033310 + G 80 -10.9 -3.73224 | opp_overlap 2033281 2033280 GGATTTAAATGGCAA TGGTTTATTTG ATA CAAATGAACCA TTTACTGACAGATCC TERM 2476 2033710 - 2033728 + G 71 -7.5 -4.02334 | ATAGAAAAAGAGCCT CAAACAG TTTAT CTGTTTG TTTCTGATGTAAATA Shewana3_1727 2030311 - 2033985 + | Ig domain-containing protein TERM 2477 2034015 - 2034042 + T 100 -11.5 -5.04325 | opp_overlap 2034015 2034020 ATTCACTTAACAGTA TTAAAGGCGAT CAGAGC ATCGCCTTTAA TTTTTGTGGTTTAGC TERM 2478 2034042 - 2034015 - T 81 -11.5 -2.76171 | opp_overlap 2034015, overlap 2034020 ATTCACTTAACAGTA TTAAAGGCGAT CAGAGC ATCGCCTTTAA TTTTTGTGGTTTAGC Shewana3_1728 2035408 - 2034074 - | succinylarginine dihydrolase TERM 2479 2034536 - 2034562 + g 76 -6.6 -4.52347 | TTTGGTGGTTGGAAC CTCGATAAAGAA TAA TTCGGTATCGAG TTTTCGTCTTATTTC TERM 2480 2035956 - 2035943 - g 74 -3.8 -4.96848 | opp_overlap 2035952, overlap 2035950 2035953 GGCGCGATATAAAAA GGTG AAAGAG CACC AGGCGCTGGTGTCGC TERM 2481 2036685 - 2036674 - g 70 -4.4 -4.63218 | TTGGGGTGAAGAAAA CCAT GATG ATGG CCCAGCGCTTGTACG Shewana3_1729 2035692 - 2038376 + | DNA topoisomerase I TERM 2482 2038422 - 2038443 + T 100 -10.9 -4.84311 | opp_overlap 2038422 CTTCGTGGTTATAAA TGGGTTCAC TTAG GTGAGCCCA TTTTGTTATCTAGGG TERM 2483 2038443 - 2038422 - T 78 -8.7 -3.85698 | opp_overlap 2038422 CTTCGTGGTTATAAA TGGGTTCAC TTAG GTGAGCCCA TTTTGTTATCTAGGG TERM 2484 2038559 - 2038541 - T 100 -13.2 -5.28778 | opp_overlap 2038541 ACCACGCATAAAAAA GCCAAGTC ACA GACTTGGC TTTTTATGGAAAACG TERM 2485 2038541 - 2038559 + T 100 -13.2 -4.82901 | opp_overlap 2038541 ACCACGCATAAAAAA GCCAAGTC ACA GACTTGGC TTTTTATGGAAAACG Shewana3_1730 2039376 - 2038597 - | hypothetical protein TERM 2486 2038922 - 2038936 + g 75 -9.2 -3.87104 | overlap 2038933 TGAGCAAAAACATTG GGGTCG ACT CGGCCC TTGTTGTGCTCTGCA cysB 2039604 - 2040578 + | transcriptional regulator CysB TERM 2487 2040633 - 2040596 - T 95 -13.8 -2.87132 | gap 1, opp_overlap 2040606, overlap 2040606 CGCGGTTGTTAGAGA CAATAAAAAATGCCGCA ATGAA TGCGGCATTTTTTAT-G CGAAATTGACAGCAG TERM 2488 2040606 - 2040624 + T 100 -10.3 -5.24531 | opp_overlap 2040606 2040596 AGAGACAATAAAAAA TGCCGCA ATGAA TGCGGCA TTTTTTATGCGAAAT TERM 2489 2040624 - 2040606 - T 100 -10.3 -5.62045 | opp_overlap 2040606, overlap 2040596 AGAGACAATAAAAAA TGCCGCA ATGAA TGCGGCA TTTTTTATGCGAAAT Shewana3_1732 2041322 - 2040660 - | two component LuxR family transcriptional regulator TERM 2490 2041517 - 2041486 - R 100 -10.9 -5.30616 | opp_overlap 2041486, overlap 2041462 2041480 2041488 TTATTCAAACAAAAA CACGCCCTCAAAC GAGCGT GTTTAAGGGCGAG AGTGCGTTATCTTGG TERM 2491 2041515 - 2041488 - R 100 -12.1 -4.2793 | opp_overlap 2041486, overlap 2041462 2041480 2041486 ATTCAAACAAAAACA CGCCCTCAAAC GAGCGT GTTTAAGGGCG AGAGTGCGTTATCTT Shewana3_1733 2041975 - 2041544 - | thioesterase superfamily protein TERM 2492 2042089 - 2042105 + r 100 -12.3 -4.14739 | opp_overlap 2042089 CACGAAAAGTAAAAA GGCTTCC AGT GGAAGCC TTTTGCCGTGGGTCA TERM 2493 2042105 - 2042089 - R 100 -12.3 -5.1166 | opp_overlap 2042089 CACGAAAAGTAAAAA GGCTTCC AGT GGAAGCC TTTTGCCGTGGGTCA Shewana3_1734 2043190 - 2042126 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2494 2042239 - 2042257 + g 85 -7.4 -4.90013 | opp_overlap 2042241, overlap 2042241 TTTGGCCGTAACACA GAGGTTGA CCC TCAACCAC TTTTTGATTGCCTTC TERM 2495 2042593 - 2042630 + g 71 -5.5 -4.56597 | overlap 2042595 CTTTTGCTGCGCGCA CCGCATCGACGGCGATA TTAA TATTGCCATCGGTACCG TTTTTAAAGCCCACG TERM 2496 2043347 - 2043335 - R 70 -7.7 -3.61178 | opp_overlap 2043335 CCTATTTAGCCTAAA TCGAG GGA CTCGA TTGCCTCGTTCGAAA Shewana3_1735 2044184 - 2043372 - | hypothetical protein TERM 2497 2045182 - 2045158 - g 79 -7.2 -4.56597 | opp_overlap 2045135, overlap 2045135 2045128 2045129 GTTGCTGCTGAAAAA CGTCGTCAAT TCTCC ATCAACGACG CCGAAGTGATGGAAC TERM 2498 2046116 - 2046105 - g 78 -5.8 -4.75472 | opp_overlap 2046104 2046115, overlap 2046100 GCCAGAGGAAGAAAA CCCA ATGT TGGG CTTCCGTGGTGCAAG Shewana3_1736 2044309 - 2046678 + | phosphoenolpyruvate synthase TERM 2499 2046727 - 2046712 - f 100 -10.4 -5.03747 | opp_overlap 2046712 AAAGGTGTTAAAAAA GCCGCT TTTT AGCGGC TTTTTTTTGTTTATA TERM 2500 2046712 - 2046727 + F 100 -10.4 -6.28967 | opp_overlap 2046712 AAAGGTGTTAAAAAA GCCGCT TTTT AGCGGC TTTTTTTTGTTTATA TERM 2501 2049071 - 2049043 - g 79 -8.2 -4.34402 | gap 1, opp_overlap 2049043 2049046, overlap 2049046 GTGCCGACATTAAAA CAACGGCTCG-AT GGTC ATGCGAGCCGTGG TTATGATCTGGCGGC TERM 2502 2049068 - 2049046 - g 79 -8.5 -4.29302 | gap 1, opp_overlap 2049043 2049046, overlap 2049043 CCGACATTAAAACAA CGGCTCG-AT GGTC ATGCGAGCCG TGGTTATGATCTGGC Shewana3_1737 2046778 - 2049819 + | FAD linked oxidase domain-containing protein TERM 2503 2049871 - 2049886 + F 100 -6.8 -5.7946 | opp_overlap 2049871 CAATGCCACACTAAA CCAGTC GTCA GGCTGG TTTTTTTATTGAGGG Shewana3_1738 2049908 - 2050396 + | hypothetical protein Shewana3_1739 2050535 - 2050966 + | MarR family transcriptional regulator TERM 2504 2052753 - 2052765 + G 73 -9.1 -3.727 | opp_overlap 2052752, overlap 2052744 CGCGCCGCCCAATAT GGAGC TTG GCTCC TTTGCCTATGATCAG Shewana3_1740 2051257 - 2055042 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 2505 2055067 - 2055090 + T 100 -11.8 -5.5112 | opp_overlap 2055067 GTAGTTTGGATTACA CCGCTATTGT TTAG GCAATAGCGG TTTTTTATTACTGAA TERM 2506 2055090 - 2055067 - T 77 -11.1 -2.78816 | opp_overlap 2055067 GTAGTTTGGATTACA CCGCTATTG TTTAGG CAATAGCGG TTTTTTATTACTGAA Shewana3_1741 2055467 - 2055120 - | hypothetical protein TERM 2507 2055190 - 2055207 + g 72 -4.1 -4.85195 | overlap 2055192 TGTTGCAGCAGGCGT TGGCCTT GAAT AAGGCTG TTTTTACCTTGTTTT TERM 2508 2055657 - 2055621 - R 74 -10.1 -3.1085 | opp_overlap 2055619 2055648 CGAAGCGAGGGAAGA GGTTGAGGCGGACAACA AGT CGTTGTCCGCCGAAAGC AGTGTTAAGCTTTTG Shewana3_1742 2056696 - 2055662 - | leucine dehydrogenase TERM 2509 2055712 - 2055725 + g 74 -8.1 -4.11394 | TTTCGTCTGCAACCG CCGCA GTAG TGCGG TTTTCAGCATCGGCT TERM 2510 2056751 - 2056725 - H 100 -9.5 -4.87592 | overlap 2056726 CTATACACAATAAAA CGTCGATGGAA TCACT TCCCATCGACA GCTCGTTATATTTAT TERM 2511 2056750 - 2056726 - H 83 -10.8 -3.5147 | overlap 2056725 TATACACAATAAAAC GTCGATGGAA TCACT TCCCATCGAC AGCTCGTTATATTTA TERM 2512 2056850 - 2056867 + H 80 -6.3 -4.8048 | CAATCTAGCTTTCCA CTTTACG TAAA CGTAAGG TTTTTAGTGTGAAAC Shewana3_1743 2056976 - 2057434 + | hypothetical protein TERM 2513 2057480 - 2057453 - T 100 -11.4 -4.13945 | opp_overlap 2057454 2057458, overlap 2057454 2057458 AGTGTTAGCGTAAAA CTAAAGGCACTC AGTT GAGTGCCTTTAT TGTTTTGGGTGACGC TERM 2514 2057479 - 2057454 - T 100 -14.9 -3.08046 | opp_overlap 2057454 2057458, overlap 2057453 2057458 GTGTTAGCGTAAAAC TAAAGGCACTC AGTT GAGTGCCTTTA TTGTTTTGGGTGACG TERM 2515 2057454 - 2057479 + T 100 -14.9 -4.21812 | opp_overlap 2057453 2057454 2057458, overlap 2057458 GTGTTAGCGTAAAAC TAAAGGCACTC AGTT GAGTGCCTTTA TTGTTTTGGGTGACG TERM 2516 2057475 - 2057458 - T 100 -11.3 -4.20806 | opp_overlap 2057454 2057458, overlap 2057454 2057453 TAGCGTAAAACTAAA GGCACTC AGTT GAGTGCC TTTATTGTTTTGGGT TERM 2517 2057458 - 2057475 + T 100 -11.3 -4.68601 | opp_overlap 2057458 2057454 2057453, overlap 2057454 TAGCGTAAAACTAAA GGCACTC AGTT GAGTGCC TTTATTGTTTTGGGT Shewana3_1744 2058670 - 2057531 - | cupin 4 family protein TERM 2518 2058707 - 2058683 - R 100 -8.6 -5.04385 | opp_overlap 2058683 CATAGTGTCAAAAAA GGCGACTACA ACGAA TGTAACCGCC TTAATCCTTATTTGT Shewana3_1745 2060167 - 2058797 - | adenylosuccinate lyase Shewana3_1746 2060814 - 2060197 - | hypothetical protein trmU 2061936 - 2060818 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2519 2061384 - 2061394 + g 71 -6.8 -4.19238 | overlap 2061381 TCTTAGCGATTTCAC GCAC TTC GTGC TTTTCGAGTTCACCG Shewana3_1748 2062649 - 2062158 - | NUDIX hydrolase TERM 2520 2062600 - 2062556 - G 71 -10.2 -3.14132 | gap 1 GCTGCTCGCCATCAA TCCACTCTTCTACCAACAGAT ACTT ATCT-TCGGTAGGAGCGTGGA TAATACAGGCCACAG Shewana3_1749 2063532 - 2062723 - | ribosomal large subunit pseudouridine synthase E TERM 2521 2063462 - 2063478 + g 79 -11.5 -3.57144 | TCCGCCGGATTGGCG CGCCCTG TTG CGGGGCG TTTGCCGCTGGCGCG TERM 2522 2064377 - 2064363 - g 78 -3.5 -5.06414 | overlap 2064367 CTTCGCTAAGAAAAA CCCAC ACTCA ATGGG TAAGTGGACCAAAGA Shewana3_1750 2063884 - 2066109 + | isocitrate dehydrogenase, NADP-dependent TERM 2523 2066160 - 2066144 - T 100 -13.7 -4.29325 | opp_overlap 2066144 CATTAATACTGAAAA GGCCTGC ATT GCAGGCC TTTTTTATCAGACTC TERM 2524 2066144 - 2066160 + T 100 -13.7 -5.252 | opp_overlap 2066144 CATTAATACTGAAAA GGCCTGC ATT GCAGGCC TTTTTTATCAGACTC TERM 2525 2066212 - 2066232 + T 100 -15.5 -4.23892 | opp_overlap 2066212 ATCGCCCAATAAAAA GGCAGGGAT ATA ATCCCTGCC TTTTAGATCATTGGC TERM 2526 2066232 - 2066212 - T 100 -15.5 -5.06816 | opp_overlap 2066212 ATCGCCCAATAAAAA GGCAGGGAT ATA ATCCCTGCC TTTTAGATCATTGGC Shewana3_1751 2066465 - 2066259 - | cold-shock DNA-binding protein family protein Shewana3_1752 2066659 - 2066967 + | ATP-dependent Clp protease adaptor protein ClpS TERM 2527 2068353 - 2068329 - g 74 -7.1 -4.4009 | opp_overlap 2068322 2068329 TCGGATCCCAGAAAA GTCTGTGTCTG CTA CGGACAAAGAC TTACTGCGTAATCTT Shewana3_1753 2067010 - 2069277 + | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 2528 2069325 - 2069290 - T 100 -12 -4.10453 | opp_overlap 2069299, overlap 2069291 2069299 TAAATGCTTTGAAAA CCAATAAAATGGCTGC AATT GCAGCCATTTTTCTGA TCTTTCGCCAACAAA TERM 2529 2069324 - 2069291 - T 100 -13.3 -3.0579 | opp_overlap 2069299, overlap 2069290 2069299 AAATGCTTTGAAAAC CAATAAAATGGCTGC AATT GCAGCCATTTTTCTG ATCTTTCGCCAACAA TERM 2530 2069316 - 2069299 - T 100 -11.3 -4.89562 | opp_overlap 2069299, overlap 2069291 2069290 TGAAAACCAATAAAA TGGCTGC AATT GCAGCCA TTTTTCTGATCTTTC TERM 2531 2069299 - 2069316 + T 100 -11.3 -5.00846 | opp_overlap 2069299 2069291 2069290 TGAAAACCAATAAAA TGGCTGC AATT GCAGCCA TTTTTCTGATCTTTC TERM 2532 2069359 - 2069345 - T 100 -12.8 -5.7946 | opp_overlap 2069345 TCGCCAACAAAAAAA CCCGGC CTC GCCGGG TTTTTCAACTAAGGG TERM 2533 2069345 - 2069359 + T 100 -12.8 -4.62069 | opp_overlap 2069345 TCGCCAACAAAAAAA CCCGGC CTC GCCGGG TTTTTCAACTAAGGG Shewana3_1754 2069599 - 2069381 - | translation initiation factor 1 Shewana3_1755 2070398 - 2069682 - | arginyl-tRNA-protein transferase aat 2071098 - 2070388 - | leucyl/phenylalanyl-tRNA--protein transferase Shewana3_1757 2071180 - 2071623 + | 17 kDa surface antigen Shewana3_1758 2071684 - 2072436 + | hypothetical protein TERM 2534 2072470 - 2072486 + T 100 -13.7 -4.83243 | opp_overlap 2072470 ATAGAGTAAATGAAA GGCGAGC CAT GCTCGCC TTTGTTTTATGTAAA TERM 2535 2072486 - 2072470 - T 100 -13.7 -4.13341 | opp_overlap 2072470 ATAGAGTAAATGAAA GGCGAGC CAT GCTCGCC TTTGTTTTATGTAAA Shewana3_1759 2073502 - 2072546 - | hypothetical protein TERM 2536 2073821 - 2073849 + r 100 -14.7 -2.75577 | opp_overlap 2073823 2073826, overlap 2073817 2073826 ATGTTTTTACCAACA AATAAGGCCGCAT TAA ATGCGGCCTTATA TCAATTTTGCAGTAG TERM 2537 2073847 - 2073823 - R 100 -17.3 -4.24342 | opp_overlap 2073821 2073817 2073826, overlap 2073826 GTTTTTACCAACAAA TAAGGCCGCAT TAA ATGCGGCCTTA TATCAATTTTGCAGT TERM 2538 2073826 - 2073844 + r 100 -14.6 -3.59984 | opp_overlap 2073823 2073826, overlap 2073821 2073817 TTTACCAACAAATAA GGCCGCAT TAA ATGCGGCC TTATATCAATTTTGC TERM 2539 2073844 - 2073826 - R 100 -14.6 -4.24413 | opp_overlap 2073826 2073821 2073817, overlap 2073823 TTTACCAACAAATAA GGCCGCAT TAA ATGCGGCC TTATATCAATTTTGC metG 2075917 - 2073887 - | methionyl-tRNA synthetase TERM 2540 2076808 - 2076792 - g 72 -3.6 -4.83169 | opp_overlap 2076792 2076796, overlap 2076778 2076794 ACCCTGTCACAAAAA GTGCCA GTGAG TGGCGC TGTGATTGTGACAAC Shewana3_1761 2076078 - 2077193 + | ATP-binding Mrp/Nbp35 family protein Shewana3_1762 2077205 - 2077843 + | uridine kinase dcd 2077873 - 2078454 + | deoxycytidine triphosphate deaminase Shewana3_1764 2078460 - 2079269 + | aminodeoxychorismate lyase apoprotein Shewana3_1765 2079266 - 2080276 + | aminodeoxychorismate lyase TERM 2541 2080413 - 2080369 - g 79 -7 -4.66609 | gap 1, opp_overlap 2080392 2080406 GATTTTATTGAAAAA CATACCGGCCTTGCACCCGTG TGTA CCCGCGAGCCAGGC-GGTACG CCGCTGGCCGAGCGC Shewana3_1766 2080273 - 2080902 + | thymidylate kinase TERM 2542 2080927 - 2080958 + G 76 -6.6 -4.58283 | gap 1, opp_overlap 2080927 2080928 2080955, overlap 2080927 2080928 GATTTGATGTATTAA C-CCTGCCTTGGC TCGATAC GCCAAGACAGGCG TTTTTAACCCAGTTA TERM 2543 2080956 - 2080928 - g 75 -12.5 -2.50935 | opp_overlap 2080928 2080927 2080927, overlap 2080927 2080955 ATTTGATGTATTAAC CCTGCCTTGGC TCGATAC GCCAAGACAGG CGTTTTTAACCCAGT TERM 2544 2081012 - 2080986 - g 74 -4.2 -4.84529 | opp_overlap 2080988, overlap 2080988 TTACAAACCCAAAAA GTCCCCCACGCG CAA CTCGTGGGTATC GATTCCGCCTATGGC Shewana3_1767 2080896 - 2081852 + | DNA polymerase III, delta prime subunit Shewana3_1768 2081859 - 2082185 + | type IV pilus biogenesis protein pilZ Shewana3_1769 2082538 - 2083338 + | TatD family hydrolase TERM 2545 2083477 - 2083449 - T 95 -5.9 -5.63504 | AAGCCCATAAAAAAA GGCCCAAAACGAT TCC AGCTGTTTGGGCC TAGGGGAATGGCTCG yebU 2085168 - 2083636 - | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 2546 2085798 - 2085816 + G 73 -8.8 -3.68827 | GCGGGGCTTTTGATC GTCGCTGT TGT GCAGCGGC TTTCACTGCTCAATG Shewana3_1771 2085231 - 2086457 + | nucleoside recognition domain-containing protein TERM 2547 2086557 - 2086513 - T 100 -20.4 -2.78384 | opp_overlap 2086519, overlap 2086519 TGTTGCTTTAGCATA TAAAAATCAGGCGCATTAGA GTTTA TCTAATGCGCCTGATTGTTA AGTGATACCGAGGGC TERM 2548 2086551 - 2086519 - T 100 -19.4 -5.00895 | opp_overlap 2086519, overlap 2086513 TTTAGCATATAAAAA TCAGGCGCATTAGA GTTTA TCTAATGCGCCTGA TTGTTAAGTGATACC TERM 2549 2086519 - 2086551 + T 100 -19.4 -3.69395 | opp_overlap 2086519 2086513 TTTAGCATATAAAAA TCAGGCGCATTAGA GTTTA TCTAATGCGCCTGA TTGTTAAGTGATACC Shewana3_1772 2089309 - 2086673 - | hypothetical protein Shewana3_1773 2089913 - 2089296 - | paraquat-inducible protein A TERM 2550 2089484 - 2089474 - G 73 -5.4 -4.65032 | overlap 2089478 GAAATTACAAACAAA TCGA GCA TCGA CCAGCGGCCAATCCA Shewana3_1774 2090550 - 2089915 - | paraquat-inducible protein A TERM 2551 2090840 - 2090825 - g 70 -4.6 -4.71061 | ATTCATATCGAAAAA GGAGGC TGAT GCCTAC GATAAGATGCTCGAC Shewana3_1775 2090757 - 2091056 + | YebG family protein Shewana3_1776 2091072 - 2091530 + | putative GAF sensor protein TERM 2552 2091633 - 2091604 - f 71 -8.7 -3.36878 | gap 1, opp_overlap 2091577 2091601, overlap 2091631 CGCATGCATTGATAA GGCTTATTTTGAGC GCA GC-CGAAATAAGCC TGATAGGTTCAGCCG Shewana3_1777 2091806 - 2092450 + | putative solute/DNA competence effector Shewana3_1778 2092479 - 2094530 + | carboxy-terminal protease TERM 2553 2094564 - 2094578 + F 100 -9.2 -5.38549 | opp_overlap 2094564 TACCTTATTTTAAAA CGCGCT TAT GGCGCG TTTTTCTTATTTAGA TERM 2554 2094578 - 2094564 - f 79 -8.5 -4.14243 | opp_overlap 2094564 TACCTTATTTTAAAA CGCGC TTATG GCGCG TTTTTCTTATTTAGA TERM 2555 2095366 - 2095377 + G 76 -5.8 -4.70659 | opp_overlap 2095366 GATATTTACATGATA GTCG CGGT CGAC TTTTTCAATATGGGG Shewana3_1779 2094616 - 2097165 + | aminopeptidase N TERM 2556 2097172 - 2097200 + F 100 -11.7 -4.14013 | overlap 2097177 GCGCAATAAGAGTTG GGCGAGGGCAGCA TTT TGCTGCCCTTATC TTTTAAGCCGTTTTC TERM 2557 2097177 - 2097195 + F 100 -14.6 -3.95435 | overlap 2097172 ATAAGAGTTGGGCGA GGGCAGCA TTT TGCTGCCC TTATCTTTTAAGCCG TERM 2558 2097658 - 2097639 - f 81 -9.3 -3.86015 | opp_overlap 2097650 CATTTTCGCCATAAA GCCTGCT TGGTTC AGCAGGC GCAGATTATTTTGAG Shewana3_1780 2097681 - 2097899 + | hypothetical protein TERM 2559 2098263 - 2098242 - g 82 -7.5 -4.68645 | opp_overlap 2098261 GAGCTAAAATGAAAA TTGTTAAAA AAAG TTTTAACAA GTCGGCGCTTGCTTT Shewana3_1781 2098235 - 2100277 + | hypothetical protein TERM 2560 2100655 - 2100642 - g 87 -9.5 -4.4017 | TGAATGTGTACAAAA CGCGC CGCA GCGCG TCAGTACCACAATTT Shewana3_1782 2100290 - 2101654 + | hypothetical protein TERM 2561 2101668 - 2101690 + F 73 -9 -3.51411 | opp_overlap 2101671, overlap 2101664 2101671 AATCAGCCACGGTAT AAAGGGGCGC TAA GCGCCCCTCA TTAGTTTAAGGAAGT TERM 2562 2101671 - 2101687 + F 100 -15.1 -2.89569 | opp_overlap 2101671, overlap 2101668 2101664 CAGCCACGGTATAAA GGGGCGC TAA GCGCCCC TCATTAGTTTAAGGA TERM 2563 2101687 - 2101671 - f 100 -15.1 -3.89822 | opp_overlap 2101671 2101668 2101664 CAGCCACGGTATAAA GGGGCGC TAA GCGCCCC TCATTAGTTTAAGGA TERM 2564 2101741 - 2101756 + G 72 -4 -4.87892 | overlap 2101736 TTCAATGCGCCGCTG CAATCA GTGT TGGTTG TTTATTTTCTTCCCC TERM 2565 2102247 - 2102231 - g 80 -4.3 -5.08824 | opp_overlap 2102233, overlap 2102233 GGCTGAGTTAAAAAA TAGCGAC CAA GCCGCTT ATTTGACCGAGCGCG TERM 2566 2102245 - 2102233 - g 71 -6.9 -4.17608 | opp_overlap 2102233, overlap 2102231 CTGAGTTAAAAAATA GCGAC CAA GCCGC TTATTTGACCGAGCG Shewana3_1783 2101710 - 2102720 + | BNR repeat-containing protein TERM 2567 2102884 - 2102870 - g 70 -2.8 -4.88407 | CTAGCCAATTAAAAA TGGATG CGG CATTCA TTAAAAATATTCCGC TERM 2568 2103423 - 2103433 + G 82 -8.2 -4.49937 | TGATGTTGCCGATGG CGCC AAA GGCG TTTTACTGTTCTTCG TERM 2569 2104673 - 2104663 - g 74 -6.8 -4.30978 | opp_overlap 2104672 TTTAAGTCATTAAAA GCGA CAG TCGC GGTGATTATTCCGCT Shewana3_1784 2102752 - 2105067 + | hypothetical protein TERM 2570 2105073 - 2105103 + F 100 -13.4 -3.70902 | opp_overlap 2105075 2105078, overlap 2105075 2105078 GGCTAAGTAGATACA AACAATGGGGAGTT TTT GACTCCCCATTGTC TTTGAATATAAACGC TERM 2571 2105075 - 2105101 + F 100 -16 -3.43773 | opp_overlap 2105075 2105078, overlap 2105073 2105078 CTAAGTAGATACAAA CAATGGGGAGTT TTT GACTCCCCATTG TCTTTGAATATAAAC TERM 2572 2105101 - 2105075 - f 100 -15.3 -4.17417 | opp_overlap 2105075 2105073 2105078, overlap 2105078 CTAAGTAGATACAAA CAATGGGGAGT TTTTG ACTCCCCATTG TCTTTGAATATAAAC TERM 2573 2105078 - 2105098 + F 100 -11.9 -3.85256 | opp_overlap 2105075 2105078, overlap 2105075 2105073 AGTAGATACAAACAA TGGGGAGTT TTT GACTCCCCA TTGTCTTTGAATATA TERM 2574 2105098 - 2105078 - f 93 -11.2 -4.19276 | opp_overlap 2105078 2105075 2105073, overlap 2105075 AGTAGATACAAACAA TGGGGAGT TTTTG ACTCCCCA TTGTCTTTGAATATA TERM 2575 2105549 - 2105538 - g 87 -7.2 -4.9448 | overlap 2105546 ATGCACTAAACAAAA CCCC GAAA GGGG AGACTCACCTCAGAG TERM 2576 2108362 - 2108339 - g 82 -7.4 -4.614 | opp_overlap 2108329, overlap 2108332 2108341 TCTAAGCACACAAAA CTTGTGGCTG CGTT CAACCACATG CATATCTTTGTCGAC TERM 2577 2109408 - 2109422 + G 83 -10 -4.19678 | AGACTGGTGCCTCAG TTGCCG ACG CGGCAA TTTGTTACACTATGG Shewana3_1785 2105333 - 2110177 + | glutamate dehydrogenase (NAD) TERM 2578 2110216 - 2110197 - f 82 -10.6 -3.63276 | opp_overlap 2110197, overlap 2110191 TTATAACAATCAGAA GCCCTGGC GATC GCCGGGGC TTTTTTTAGGTCGAG TERM 2579 2110197 - 2110216 + F 100 -12.8 -5.47218 | opp_overlap 2110197 2110191 TTATAACAATCAGAA GCCCTGGC GATC GCCGGGGC TTTTTTTAGGTCGAG Shewana3_1786 2110240 - 2111259 + | dihydroorotate dehydrogenase 2 TERM 2580 2111352 - 2111317 - f 100 -13.6 -3.62775 | overlap 2111320 2111333 AGGATCTTTTAATAA TAACTGCGATCTAA AACGATCA TTAGATCGCAGTTA AGATCTCAAAACAGA TERM 2581 2111349 - 2111320 - f 90 -10.9 -3.94877 | overlap 2111317 2111333 ATCTTTTAATAATAA CTGCGATCTAA AACGATCA TTAGATCGCAG TTAAGATCTCAAAAC TERM 2582 2111346 - 2111333 - f 71 -6.7 -4.18762 | overlap 2111320 2111317 AACTGCGATCTAAAA CGATC ATTA GATCG CAGTTAAGATCTCAA Shewana3_1787 2111472 - 2112005 + | hypothetical protein TERM 2583 2112007 - 2112034 + T 76 -7.7 -4.20367 | opp_overlap 2112007 TTGTTGCGGCATAAA TGACGGTCTAG CCAAGT CTTGGCCGTCA TTATTTATTGCGAGC TERM 2584 2112470 - 2112431 - T 100 -13.1 -3.68073 | opp_overlap 2112430 2112428 TACTTTAGTGAATAA TGGGCTTTGTTTGCCTA TATCGC TAAGGAAACAAAGCCCA GTCAATTTACTTACT Shewana3_1788 2115122 - 2112522 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 2585 2112694 - 2112714 + g 73 -9 -3.74526 | opp_overlap 2112696 CCCGCTTCTTGGATA GATGCTGG AATGC CCAGCGTC TTCTTGAGTTGCTCG TERM 2586 2112718 - 2112730 + g 74 -4.1 -5.01732 | overlap 2112723 ATGCCCAGCGTCTTC TTGAG TTG CTCGA TTTTTTCCAGCAATT TERM 2587 2114280 - 2114298 + g 77 -10.3 -3.55444 | overlap 2114272 2114271 GATAACTTGTTGCAT TGCAGCG GTTTG CGCTGCA TTTAAGAGATAACCA TERM 2588 2115141 - 2115169 + H 76 -7.6 -4.11183 | opp_overlap 2115141 2115132 TAAAACTCCTAAAAA GATTTAGGGAAT GCGCG ATTCGCTAAATC TTCTTTATGATGAAA TERM 2589 2115169 - 2115141 - H 86 -7.6 -4.66264 | opp_overlap 2115141, overlap 2115132 TAAAACTCCTAAAAA GATTTAGGGAAT GCGCG ATTCGCTAAATC TTCTTTATGATGAAA TERM 2590 2115453 - 2115463 + G 80 -2.6 -5.46657 | ACTTGGAGTTAACAC TTTA CGT TAAA TTTTTTCTTGGCCTG Shewana3_1789 2115440 - 2116072 + | hypothetical protein TERM 2591 2116104 - 2116082 - f 71 -9.1 -3.25515 | opp_overlap 2116083, overlap 2116080 2116075 2116083 AGCTAAAATTGAAGA TGGGAGGAC ACCAA GTCCTCCCT TGTTTTAGGTGTGGC TERM 2592 2116103 - 2116083 - f 86 -12.6 -2.54586 | opp_overlap 2116083, overlap 2116082 2116080 2116075 GCTAAAATTGAAGAT GGGAGGAC ACCAA GTCCTCCC TTGTTTTAGGTGTGG TERM 2593 2116083 - 2116103 + F 100 -12.6 -4.23999 | opp_overlap 2116083 2116082 2116080 2116075 GCTAAAATTGAAGAT GGGAGGAC ACCAA GTCCTCCC TTGTTTTAGGTGTGG TERM 2594 2116546 - 2116572 + G 86 -13.8 -3.53343 | opp_overlap 2116570 CGCGGCATGAGCGCT GGCTTTATTGGC TCA GCCGGTAAAGCC TTTGCAGGCAAAATT Shewana3_1790 2116330 - 2118324 + | methyl-accepting chemotaxis sensory transducer TERM 2595 2118645 - 2118630 - f 75 -9 -3.67417 | opp_overlap 2118630 ATATTCAAGTTTAAA GACGTC CTAG GACGTC TTTTTTCTTACCTGT TERM 2596 2118630 - 2118645 + F 100 -9 -5.49234 | opp_overlap 2118630 ATATTCAAGTTTAAA GACGTC CTAG GACGTC TTTTTTCTTACCTGT TERM 2597 2118938 - 2118891 - f 76 -8 -4.19817 | opp_overlap 2118891 TTTATTCAGTGAAAA GTAATGCTTGATTTTAGAGT GCGAAATA ATGCCAAAATCAAGCATTAC TTTTGGGCTAAATTT TERM 2598 2118891 - 2118938 + F 76 -8 -4.15854 | opp_overlap 2118891 TTTATTCAGTGAAAA GTAATGCTTGATTTTAGAGT GCGAAATA ATGCCAAAATCAAGCATTAC TTTTGGGCTAAATTT TERM 2599 2119201 - 2119189 - g 75 -9.1 -3.86015 | GAGGCGCGTGATAAA GCGCT AGA AGCGC GAAAAAACTTGGCCG Shewana3_1791 2118970 - 2120205 + | phage integrase family protein Shewana3_1792 2120257 - 2121144 + | hypothetical protein TERM 2600 2121395 - 2121337 - f 100 -8.79999 -5.15117 | gap 3, opp_overlap 2121341, overlap 2121341 2121343 GAAAAGTTTAAAAAA CAAATTCATTTTATCTGCTATTTCTGCTA CTAA TAGCAGAAATAGCAGATAAAATGGAT--- GTGTCAATGCAAAAA TERM 2601 2121341 - 2121394 + F 100 -28.1 -2.91264 | opp_overlap 2121337 2121341 2121343 AGTTTAAAAAACAAA TTCATTTTATCTGCTATTTCTGCTA CTAA TAGCAGAAATAGCAGATAAAATGGA TGTGTCAATGCAAAA TERM 2602 2121394 - 2121341 - f 100 -25.9 -5.05153 | opp_overlap 2121341, overlap 2121337 2121343 AGTTTAAAAAACAAA TTCATTTTATCTGCTATTTCTGCTA CTAA TAGCAGAAATAGCAGATAAAATGGA TGTGTCAATGCAAAA TERM 2603 2121392 - 2121343 - f 100 -28.5 -2.75795 | opp_overlap 2121341, overlap 2121341 2121337 TTTAAAAAACAAATT CATTTTATCTGCTATTTCTGCTA CTAA TAGCAGAAATAGCAGATAAAATG GATGTGTCAATGCAA TERM 2604 2122287 - 2122275 - g 70 -3.4 -4.78848 | GCGGTAAAGATAAAA CCAT TGCAG ATGG TTGCCAGTTTCCATA Shewana3_1793 2121390 - 2122307 + | hypothetical protein Shewana3_1794 2122846 - 2124315 + | hypothetical protein Shewana3_1795 2124630 - 2125307 + | hypothetical protein TERM 2605 2125356 - 2125376 + T 100 -9.7 -4.84918 | opp_overlap 2125355 2125354 ATAGGGAAGTAAAGG GCAAGGGCT TAA ATCCCTTGC TTTTGTGTTTATAGA Shewana3_1796 2125746 - 2125453 - | plasmid stabilization system protein Shewana3_1797 2126018 - 2125734 - | CopG family transcriptional regulator TERM 2606 2126226 - 2126249 + r 83 -9.6 -3.95219 | gap 1, opp_overlap 2126226 CATGAGGGATAAAAA CGATAGCGGCG GCA TGCCGCT-TCG TTTATAGGGTTTGGG TERM 2607 2126249 - 2126226 - R 100 -8.9 -4.88736 | gap 1, opp_overlap 2126226 CATGAGGGATAAAAA CGATAGCGGC GGCAT GCCGCT-TCG TTTATAGGGTTTGGG Shewana3_1798 2127027 - 2126305 - | retinol acyltransferase domain-containing protein Shewana3_1799 2127729 - 2127115 - | phage integrase family protein TERM 2608 2127756 - 2127788 + r 100 -15 -3.05816 | opp_overlap 2127713 ATGGGGCCTGCGTTG CTTGGTGCCCAAAA TACCT TTGTGGGCACCAAG TTCAGTCGGCGCTGA Shewana3_1800 2128197 - 2127790 - | hypothetical protein TERM 2609 2128243 - 2128218 - R 100 -11.2 -5.46706 | gap 1 ACTCCAAAACAAAAA GCCCGCGAACG ACAGG CGTT-GCGGGC AGGGTAGGTTGTTAT Shewana3_1801 2128800 - 2128387 - | hypothetical protein TERM 2610 2128876 - 2128822 - R 86 -8 -4.65895 | gap 1, opp_overlap 2128831 2128835, overlap 2128831 2128835 TTCCTTATTTAAAAA CGGGCATA-AGCAAGAGCTAAGGCG TAACTG CGCCTTAACTCTTGCTGTCTATGCG GGTGGGTTAATAAAA TERM 2611 2128866 - 2128831 - R 100 -18.5 -3.37589 | opp_overlap 2128831 2128835, overlap 2128822 2128835 TAAAAACGGGCATAA GCAAGAGCTAAGGCG TAACTG CGCCTTAACTCTTGC TGTCTATGCGGGTGG TERM 2612 2128831 - 2128866 + r 100 -17 -2.99471 | opp_overlap 2128822 2128831 2128835, overlap 2128835 TAAAAACGGGCATAA GCAAGAGCTAAGGCGT AACT GCGCCTTAACTCTTGC TGTCTATGCGGGTGG TERM 2613 2128862 - 2128835 - R 91 -12.1 -3.4489 | opp_overlap 2128835 2128831, overlap 2128831 2128822 AACGGGCATAAGCAA GAGCTAAGGCG TAACTG CGCCTTAACTC TTGCTGTCTATGCGG TERM 2614 2128835 - 2128862 + r 78 -10.6 -3.35197 | opp_overlap 2128831 2128822 2128835, overlap 2128831 AACGGGCATAAGCAA GAGCTAAGGCGT AACT GCGCCTTAACTC TTGCTGTCTATGCGG Shewana3_1802 2129401 - 2129045 - | hypothetical protein Shewana3_1803 2129877 - 2129515 - | hypothetical protein Shewana3_1804 2130424 - 2129918 - | DNA repair protein RadC Shewana3_1805 2130760 - 2131212 + | MerR family transcriptional regulator TERM 2615 2131618 - 2131630 + G 83 -5.5 -5.11836 | opp_overlap 2131618 CCTGAACTGGCAAGA CCGTA AAC TGCGG TTTTATTTTCCGTGT Shewana3_1806 2131190 - 2132206 + | vault protein inter-alpha-trypsin subunit Shewana3_1807 2132215 - 2133363 + | hypothetical protein Shewana3_1808 2133981 - 2134688 + | hypothetical protein Shewana3_1809 2134712 - 2135677 + | hypothetical protein Shewana3_1810 2136054 - 2135797 - | hypothetical protein TERM 2616 2136075 - 2136040 - G 83 -9 -4.37092 | gap 1 ATGCTTGTTACAAAA GGCATCGCCGC-GCACA AAG CGTTCGGCGACGATACC TGCTGCGGTTTCTAA TERM 2617 2137433 - 2137462 + G 80 -2.2 -5.47821 | TTTCAGATAAGGTAG GAGTTTTTGAAT TGGCGC ATTCAGGTACTC TTTTTTTGGATGAGT Shewana3_1811 2136712 - 2138136 + | sigma-54 dependent trancsriptional regulator TERM 2618 2138282 - 2138259 - g 72 -3.9 -4.80455 | gap 1, opp_overlap 2138259, overlap 2138261 CACGTAAAGATAAAA TC-TCACAGC TTATG GCTGCGATGA ATGTTGGTCTGTTAG Shewana3_1812 2138213 - 2139742 + | ATPase TERM 2619 2139762 - 2139750 - g 83 -5.5 -5.1963 | opp_overlap 2139757, overlap 2139758 GTGAATGAACAAAAA CCAAC ACA GCTGG CTCCAGCACTTAATA TERM 2620 2140649 - 2140663 + G 73 -2.7 -5.02074 | AATCAGTCGAATGTT GCCTC AAGAA GCGGC TTTTTTGGGGCATCC TERM 2621 2140711 - 2140729 + G 70 -8.9 -3.52073 | overlap 2140697 2140696 GGCATGCCCGGCGAG CTGAGCA TGCAT TGCTCAG TTATGCTGTTGAAGG Shewana3_1813 2139735 - 2141318 + | von Willebrand factor, type A Shewana3_1814 2141332 - 2141865 + | hypothetical protein TERM 2622 2142191 - 2142181 - g 100 -4 -6.02546 | opp_overlap 2142181 GGAAATGAAAAAAAA GAAT GCA ATTC TAATTTTGGAAGCTC Shewana3_1815 2142170 - 2142850 + | hypothetical protein TERM 2623 2143015 - 2142997 - g 73 -5.9 -4.58283 | overlap 2142999 CAAGTTTGGTAAAAA TGGGGCG CATGC CGCCCGA AGCATGATGATCCAA Shewana3_1816 2142947 - 2143714 + | hypothetical protein Shewana3_1817 2143719 - 2144261 + | hypothetical protein TERM 2624 2144683 - 2144701 + G 71 -10.2 -3.17229 | overlap 2144681 GTTTACATGCCGCCT CCGGCACC TTA GGTGCGGG TGTTGATGATAAGGT TERM 2625 2145172 - 2145157 - g 73 -9 -3.66646 | AAGAGGCGATCGAAA CCTGCT GTAA AGCAGG CAAATTTAAAGGGCG TERM 2626 2145783 - 2145796 + G 70 -2.3 -5.01732 | ATCAACCATGGTATC GCCTC AACG GAAGC TTTTTTGGCAGACTT TERM 2627 2145853 - 2145839 - g 70 -10 -3.20991 | opp_overlap 2145852 TTTAAGTGAAGGTAA GCACGA ACT TCGTGC CCGACTTCCAGGCTT TERM 2628 2146841 - 2146815 - g 76 -2.8 -5.07486 | overlap 2146816 GATGGCCAAGAAAAA CCGCTCGATGCC AAA AGCCTTGAGCGC GCCAAAGTCGGCCAA Shewana3_1818 2144277 - 2147750 + | hypothetical protein TERM 2629 2147792 - 2147774 - f 100 -9.6 -4.89339 | opp_overlap 2147774 2147780, overlap 2147787 2147789 AAGCACCCAGAAAAA GAGCCCTT AAC AAGAGCTC TTTACAAGAGCCACG TERM 2630 2148785 - 2148798 + G 86 -8.1 -4.72986 | overlap 2148793 2148793 CCCTCGACCCTTGCT GTGGC TCCG GCCAC TTTTTGGTGGCGCTG TERM 2631 2150746 - 2150757 + G 73 -3 -5.00616 | opp_overlap 2150730 AGCCTGGAGACCTGG CTTA GGGA TAAG TTTTTTGAGCAGCAC TERM 2632 2151016 - 2150991 - g 80 -11.9 -3.47713 | overlap 2150989 CAAAAACCTGAAAGA CACCCTCGAAG CCAT CCTCAAGGGTG ATGCCATTAGCACCA TERM 2633 2151183 - 2151163 - g 74 -2.5 -5.14477 | GATATAGGCAAAAAA GGCGC CGGTATTTTGC GCGCC AAGCCCAATATCAAC Shewana3_1819 2147878 - 2151342 + | hypothetical protein TERM 2634 2151711 - 2151693 - g 86 -6.7 -5.0133 | opp_overlap 2151707, overlap 2151680 GAGCCCGGTAAAAAA TTGCAGG GCATA CCCGCAA AACCCAGATTAGCGT Shewana3_1820 2151348 - 2153036 + | hypothetical protein TERM 2635 2154077 - 2154087 + G 70 -8.2 -3.79747 | AAGTGGCGAAGCTGA CGGC GCA GCCG TTTACTCATCAATCA Shewana3_1821 2153023 - 2155062 + | hypothetical protein TERM 2636 2155416 - 2155430 + G 80 -10 -4.07568 | TAGTTTTATCTTAGA CTCGAC ACT GTCGAG TTTTGACAAAGCAAA TERM 2637 2155687 - 2155671 - g 83 -2.9 -5.47218 | GTTCATCGAAAAAAA CATTGAC GGT GACAACG ATAACCCCCACTTTA Shewana3_1822 2155072 - 2155788 + | zeta toxin family protein TERM 2638 2155998 - 2155981 - T 71 -8.4 -3.44229 | opp_overlap 2155981 ATTCTATGACGATAA GCCGCT TTTTAT AGCGGC TTTGTTATTTAAAGA TERM 2639 2155981 - 2155998 + T 87 -8.4 -4.56978 | opp_overlap 2155981 ATTCTATGACGATAA GCCGCT TTTTAT AGCGGC TTTGTTATTTAAAGA Shewana3_1823 2157856 - 2156003 - | hypothetical protein Shewana3_1824 2159871 - 2157871 - | glutathione synthase TERM 2640 2161376 - 2161365 - g 74 -4.4 -4.75174 | TACTCAAGGCAAAAA TTGG GGAA CCAA TACCAGTGTTGCTGA Shewana3_1825 2160481 - 2163678 + | ATPase-like protein TERM 2641 2163717 - 2163758 + G 73 -10.9 -3.26596 | overlap 2163712 2163721 TTTATTAGCTTTGTG AGTACTGCCATTAGTTCTG CCTG CAGCACTATTGGCAGTGCG TTGAGTTCGTTTGCC TERM 2642 2163721 - 2163754 + G 76 -12.5 -2.57757 | overlap 2163717 2163712 TTAGCTTTGTGAGTA CTGCCATTAGTTCTG CCTG CAGCACTATTGGCAG TGCGTTGAGTTCGTT Shewana3_1826 2163696 - 2164388 + | hypothetical protein Shewana3_1827 2164599 - 2165444 + | hypothetical protein TERM 2643 2165495 - 2165460 - g 73 -2.7 -4.92757 | TCACCAAGAAGAAAA CACTTTTGTGCAT TTAACCCTTG ATGAACAAAAGCG CTTAGATGAACTCAG TERM 2644 2165898 - 2165877 - g 71 -5.1 -4.50976 | TCTCACATTAGAAAA TGCGTTAAC GTCG GCTACCGCA AAACTAAAGCACTTA Shewana3_1828 2165437 - 2166396 + | hypothetical protein Shewana3_1829 2166520 - 2169438 + | hypothetical protein TERM 2645 2169477 - 2169512 + F 84 -11.4 -3.14602 | gap 1, overlap 2169474 ATTTCGACATGTTAT GGCTTATTTATGA-CCA AAT TGGATCATATATAAGCC TGTTAATAAGGTAAA TERM 2646 2169818 - 2169807 - g 87 -4.4 -5.42975 | opp_overlap 2169807 TTAGATAAACAAAAA CAGA TAGA TCTG TTAGTTTGGCGGGAG Shewana3_1830 2169657 - 2170193 + | hypothetical protein Shewana3_1831 2171913 - 2170630 - | hypothetical protein TERM 2647 2171846 - 2171834 - G 82 -7.7 -4.73613 | opp_overlap 2171842 GGATCAGCAATAAAA TCGAG ATG CTCGA GCAGTGCACGAAGTT TERM 2648 2172685 - 2172695 + r 78 -4 -5.09426 | TTGCCAGTTTTTACA GAAT AAG ATTC TTTTTTAAGCTTCAC TERM 2649 2173061 - 2173087 + r 100 -9.4 -4.98531 | opp_overlap 2173047 AGACTCCCTCTCTCA CGGGAATCAGTA ACT TACGGAGTCCCG TTTTTGCTTTGGGAC Shewana3_1832 2174392 - 2173136 - | DNA-repair protein TERM 2650 2173186 - 2173210 + g 83 -9.3 -4.31164 | opp_overlap 2173193 TGGTGTATTGTGGTG TGAGTAATGCG CGG CGCATTGCCCA TTTCTGTTCTATGCC Shewana3_1833 2175204 - 2174380 - | putative prophage repressor TERM 2651 2174944 - 2174928 - G 78 -9.5 -3.86346 | opp_overlap 2174928 2174928 2174929 TGAGTTGGCCATAAA TCACACA CCC TGTGTGA GGTTTTATATGGCGA TERM 2652 2174928 - 2174946 + g 71 -5.2 -4.53303 | opp_overlap 2174928, overlap 2174928 2174929 TGAGTTGGCCATAAA TCACACAC CCT GTGTGAGG TTTTATATGGCGATC TERM 2653 2175191 - 2175170 - G 73 -8.9 -3.73982 | opp_overlap 2175170, overlap 2175165 2175184 CGCATAGCAATATAA TTACTGTAT GTAA ATACAGTAA TTGTAGCGAGCATTG Shewana3_1834 2175942 - 2175298 - | hypothetical protein Shewana3_1835 2176226 - 2177515 + | FAD dependent oxidoreductase Shewana3_1836 2178484 - 2177603 - | LysR family transcriptional regulator TERM 2654 2178248 - 2178262 + g 77 -11.4 -3.41222 | overlap 2178247 GGTAATCGCCCGCTC GGCCTC CTC GAGGCC TGTTTGCAATTGGCG Shewana3_1837 2178680 - 2179819 + | alcohol dehydrogenase TERM 2655 2179872 - 2179840 - f 100 -15.8 -2.78596 | gap 1, opp_overlap 2179832 2179840 2179871 CAGTTTGCCATCACA GCAGCAGATAA-CCG CTAA CGGCTTATCTGCTGC TTATGCGTTTTAAGC TERM 2656 2179840 - 2179872 + F 100 -15.8 -3.52113 | gap 1, opp_overlap 2179840, overlap 2179832 2179871 CAGTTTGCCATCACA GCAGCAGATAA-CCG CTAA CGGCTTATCTGCTGC TTATGCGTTTTAAGC TERM 2657 2180373 - 2180411 + G 79 -12.4 -3.22223 | opp_overlap 2180373 CCCGTGACAGATCAA CGCGCTATCTCTGGCCAT TCG ATGGGCGGGCATGGCGCG TTAGTGATAGGGTTA Shewana3_1838 2179947 - 2180786 + | putative esterase TERM 2658 2180843 - 2180813 - f 91 -12.8 -2.73542 | opp_overlap 2180818, overlap 2180818 GTTAACCCCCAAGCA TTAAACCCTAGAGT TAA ACTTTAGGGTTTAA TATAAAAAGCGCAGT TERM 2659 2180838 - 2180818 - f 75 -8.3 -3.84246 | opp_overlap 2180818, overlap 2180813 CCCCCAAGCATTAAA CCCTAGAGT TAA ACTTTAGGG TTTAATATAAAAAGC TERM 2660 2180818 - 2180838 + F 86 -10.5 -3.83026 | opp_overlap 2180818 2180813 CCCCCAAGCATTAAA CCCTAGAGT TAA ACTTTAGGG TTTAATATAAAAAGC TERM 2661 2180878 - 2180852 - f 100 -14.5 -5.0916 | opp_overlap 2180852 GGTTTAATATAAAAA GCGCAGTGAAC ATTAA GTTCACCGCGC TTTTTATTTTCTACG TERM 2662 2180852 - 2180878 + F 100 -12.3 -5.54907 | opp_overlap 2180852 GGTTTAATATAAAAA GCGCAGTGAAC ATTAA GTTCACCGCGC TTTTTATTTTCTACG Shewana3_1839 2181132 - 2181974 + | peptidase S1 and S6, chymotrypsin/Hap TERM 2663 2183123 - 2183135 + G 71 -6.3 -4.32857 | opp_overlap 2183114 2183122 2183123, overlap 2183119 GACAAGCTGAGCAAG TTCAG GCG CTGAA TTTGTGTTTGGAACA Shewana3_1842 2182927 - 2183268 + | hypothetical protein TERM 2664 2183357 - 2183391 + T 100 -15.3 -3.41581 | gap 1, opp_overlap 2183365, overlap 2183359 2183365 GCAAGAGATGTTTGA T-ACAAAAACGCCTGC AATT GCAGGCGTTTTTGTCA TTGCTTAGTCGCTTG TERM 2665 2183359 - 2183388 + T 100 -19.5 -2.85896 | opp_overlap 2183365, overlap 2183357 2183365 AAGAGATGTTTGATA CAAAAACGCCTGC AATT GCAGGCGTTTTTG TCATTGCTTAGTCGC TERM 2666 2183382 - 2183365 - T 100 -12.7 -4.96848 | opp_overlap 2183365 2183359 2183357 TGTTTGATACAAAAA CGCCTGC AATT GCAGGCG TTTTTGTCATTGCTT TERM 2667 2183365 - 2183382 + T 100 -12.7 -5.00765 | opp_overlap 2183365, overlap 2183359 2183357 TGTTTGATACAAAAA CGCCTGC AATT GCAGGCG TTTTTGTCATTGCTT Shewana3_1843 2183771 - 2183421 - | hypothetical protein Shewana3_1844 2183996 - 2183796 - | hypothetical protein Shewana3_1845 2187216 - 2184010 - | hypothetical protein TERM 2668 2186668 - 2186681 + g 76 -8.1 -4.24342 | opp_overlap 2186668 GGATTTGATATTTAA CGCCA ACGC TGGCG TTTGTTCATCGGCGA TERM 2669 2187122 - 2187104 - G 76 -11.6 -3.32844 | TTTTTGAGTGTAGAA CCGCGGCG AGA CGCCGCCG AATGTGGCGCTGCGG Shewana3_1846 2188661 - 2187474 - | aromatic amino acid transporter TERM 2670 2187640 - 2187626 - G 95 -6.4 -5.50499 | overlap 2187627 2187628 TCACAGGTAAAAAAA TCGCGA GGA TCACGA GGGCGATCGCCGCAT TERM 2671 2189326 - 2189295 - R 76 -10.8 -2.68532 | GCTAAATGGAGAGTA CTCTGCCGCAGACC CAAA GGAATGCGACAGAG TGGTACTGCGATGTT Shewana3_1847 2190011 - 2189352 - | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2672 2189849 - 2189820 - G 74 -3.5 -5.02476 | gap 1, opp_overlap 2189828 2189830 2189846, overlap 2189797 2189821 2189822 AGAGCGGCTAAAAAA CGTCACATCACCGG TTG CCAGTG-TGTGCTG CAGCGCGGCTTTATC TERM 2673 2189915 - 2189930 + g 71 -6.1 -4.41633 | opp_overlap 2189912, overlap 2189912 GATTTTGGATAACTG CAGGG ATAAGC CCCTG TTGTTTTTCCCAGTC Shewana3_1848 2190829 - 2190056 - | imidazole glycerol phosphate synthase subunit HisF TERM 2674 2190313 - 2190325 + g 76 -4.7 -5.03945 | CGTTGAGCACGATTT CGCCG CAG CCGCG TTTTTGTACTTCTTC TERM 2675 2190703 - 2190730 + g 81 -14.2 -2.69151 | gap 1, overlap 2190699 CCAGTTCGTCGGCGC CCTCT-GCGGCGT AAC GCGCCGCGAGAGG TACTATGTCGCCAAC Shewana3_1849 2191548 - 2190811 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisH 2192228 - 2191578 - | imidazole glycerol phosphate synthase subunit HisH TERM 2676 2192373 - 2192349 - R 79 -11.5 -2.50113 | opp_overlap 2192351 2192370, overlap 2192348 2192351 CATCAGGTCATTAAG CACCTAACTCA GAT TGAGTGAGGTG TTAGAGCACGCCTTT Shewana3_1851 2193465 - 2192374 - | imidazole glycerol-phosphate dehydratase/histidinol phosphatase TERM 2677 2192702 - 2192678 - G 70 -4.3 -4.74084 | overlap 2192679 AAACTAAAACCAAAA CGGGCAATA CCGCGTT TATCGCCCA GTGCTTGGCGCAGTG Shewana3_1852 2194753 - 2193548 - | histidinol phosphate aminotransferase TERM 2678 2193973 - 2193950 - G 73 -5.2 -4.7254 | gap 1 ATTGGCGAGCAAAAA GCCGCAGC-GG GCG CCTGCTAAGGC AAAGGCCTTTGAAAG TERM 2679 2194580 - 2194614 + g 100 -16.5 -3.10701 | overlap 2194568 2194583 GGGCGTTAACTCGAG CAGTTCTGGCCGCGC AAGAC GTGCGGCCAGAGTTG TTGGCTCGATGTTTA TERM 2680 2194583 - 2194611 + g 93 -14.6 -3.68836 | overlap 2194580 2194568 CGTTAACTCGAGCAG TTCTGGCCGCGC AAGAC GTGCGGCCAGAG TTGTTGGCTCGATGT Shewana3_1853 2196121 - 2194820 - | histidinol dehydrogenase TERM 2681 2195558 - 2195540 - G 70 -8.8 -3.57971 | AGATTCAGTGCCAAA GGCCAATG CGG CAATGGCC TGCGCGCCACCCACT hisG 2197024 - 2196125 - | ATP phosphoribosyltransferase TERM 2682 2197204 - 2197183 - R 100 -12.3 -5.0925 | opp_overlap 2197183 GCCTAAAAGCAAAAA CCCCCGGAA TTCC TTCCAGGGG TTAGTGATCATCTTT TERM 2683 2197183 - 2197204 + r 76 -10.1 -3.25304 | opp_overlap 2197183 GCCTAAAAGCAAAAA CCCCCGGAA TTCC TTCCAGGGG TTAGTGATCATCTTT TERM 2684 2197356 - 2197382 + r 82 -3.1 -5.44119 | gap 1, overlap 2197357 TTCTATTGAATTCGG TGTT-GGTGGAT ACTT ATCCATCGAACG TTTTTTTAAGCTAAC Shewana3_1855 2198511 - 2197684 - | hypothetical protein Shewana3_1856 2198903 - 2198577 - | hypothetical protein Shewana3_1857 2199402 - 2199022 - | acyltransferase domain-containing protein Shewana3_1858 2199903 - 2199562 - | hypothetical protein Shewana3_1859 2200160 - 2202184 + | helicase c2 Shewana3_1860 2202241 - 2202759 + | rod shape-determining-related protein TERM 2685 2202790 - 2202809 + T 93 -13.6 -2.63631 | opp_overlap 2202790 ATTCGAGGGTAAGCA TGGCCTGC CGCG GCAGGCCA TGATCTCAGGATTAG TERM 2686 2202809 - 2202790 - T 93 -13.6 -2.73483 | opp_overlap 2202790 ATTCGAGGGTAAGCA TGGCCTGC CGCG GCAGGCCA TGATCTCAGGATTAG Shewana3_1861 2204782 - 2202821 - | TonB-dependent receptor TERM 2687 2205250 - 2205211 - R 100 -14 -4.05747 | gap 1, opp_overlap 2205215 2205223, overlap 2205213 2205215 GAGAGGCTATAGAAA CATATAGATGAAGGGATAA GCG TTATCCCTTCATCTAT-TA CTCGACTATTACTCG TERM 2688 2205249 - 2205213 - R 100 -16.9 -3.61946 | opp_overlap 2205215 2205223, overlap 2205211 2205215 GAGGCTATAGAAACA TATAGATGAAGGGATAA GCG TTATCCCTTCATCTATT ACTCGACTATTACTC TERM 2689 2205215 - 2205247 + r 100 -19.5 -3.18735 | opp_overlap 2205213 2205211 2205215, overlap 2205223 GGCTATAGAAACATA TAGATGAAGGGATAA GCG TTATCCCTTCATCTA TTACTCGACTATTAC TERM 2690 2205247 - 2205215 - R 100 -19.5 -3.38294 | opp_overlap 2205215 2205223, overlap 2205213 2205211 GGCTATAGAAACATA TAGATGAAGGGATAA GCG TTATCCCTTCATCTA TTACTCGACTATTAC TERM 2691 2205223 - 2205239 + r 74 -9.5 -3.38951 | opp_overlap 2205215 2205213 2205211, overlap 2205215 AAACATATAGATGAA GGGATAA GCG TTATCCC TTCATCTATTACTCG Shewana3_1862 2206800 - 2205283 - | methyl-accepting chemotaxis sensory transducer pheS 2207235 - 2208254 + | phenylalanyl-tRNA synthetase subunit alpha TERM 2692 2208990 - 2208980 - g 82 -6.8 -4.7497 | TGGATGCAGGAAAAA CTGC GCC GCAG CGGTATCCGTTCTAT TERM 2693 2210293 - 2210309 + G 73 -5.1 -4.74504 | opp_overlap 2210296, overlap 2210296 GAAGCCTTTTGGACT CAATGGT AAA ACCATCG TTTTTGAGTTGGAAT pheT 2208269 - 2210656 + | phenylalanyl-tRNA synthetase subunit beta Shewana3_1865 2210660 - 2210956 + | integration host factor, alpha subunit TERM 2694 2210972 - 2211005 + F 100 -18.4 -4.75472 | opp_overlap 2210979 TTTCTTAAAGTTTGA TAGGAAAGCCACTC CATCGC GAGTGGCTTTCCTA TTTTCTTCCTATGCG TERM 2695 2210998 - 2210979 - f 81 -9.3 -3.8377 | opp_overlap 2210972 AAGTTTGATAGGAAA GCCACTC CATCGC GAGTGGC TTTCCTATTTTCTTC Shewana3_1866 2211053 - 2211991 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2696 2212081 - 2212044 - T 100 -20.3 -3.29471 | opp_overlap 2212049, overlap 2212049 CTGCTAGCAGACCAA TAAAATGGGCTTTAAGT GGAT ACTTAAAGCCCATTTTA TATCAAGTGTGAATG TERM 2697 2212076 - 2212049 - T 100 -15.8 -4.76075 | opp_overlap 2212049, overlap 2212044 AGCAGACCAATAAAA TGGGCTTTAAGT GGAT ACTTAAAGCCCA TTTTATATCAAGTGT TERM 2698 2212049 - 2212076 + T 100 -15.8 -4.54449 | opp_overlap 2212049 2212044 AGCAGACCAATAAAA TGGGCTTTAAGT GGAT ACTTAAAGCCCA TTTTATATCAAGTGT Shewana3_1867 2212477 - 2212121 - | hydrogenase nickel insertion protein HypA Shewana3_1868 2213496 - 2212477 - | hydrogenase expression/formation protein HypE Shewana3_1869 2214628 - 2213489 - | hydrogenase expression/formation protein HypD Shewana3_1870 2214932 - 2214687 - | hydrogenase assembly chaperone hypC/hupF Shewana3_1871 2215693 - 2214932 - | hydrogenase accessory protein HypB TERM 2699 2215883 - 2215853 - R 100 -15.6 -3.87815 | overlap 2215857 GTTTATTTGGATAAA CAAAGGCCAAAGAA CAT TTCTTTGGCCTGTG GGATGAAGCACTTGA TERM 2700 2215879 - 2215857 - R 100 -15 -4.55697 | overlap 2215853 ATTTGGATAAACAAA GGCCAAAGAA CAT TTCTTTGGCC TGTGGGATGAAGCAC Shewana3_1872 2218225 - 2215904 - | oxidoreductase alpha (molybdopterin) subunit TERM 2701 2217988 - 2217977 - G 73 -5.8 -4.57837 | ATACTGGGCGAAAAA GTCG CGAT CGAC AATCTTGCCTGTCGA TERM 2702 2218191 - 2218204 + g 76 -5.9 -4.70659 | AGTGAGGGGAAGCCG CCGGC TTTG GTCGG TTTTTCAATATGAAC Shewana3_1873 2219069 - 2218209 - | formate dehydrogenase family accessory protein FdhD TERM 2703 2218728 - 2218738 + g 74 -6.8 -4.39407 | GCAGCCAGTTGCGCC GACG AGC CGTC TTTTACGTTGTTTAA Shewana3_1874 2219231 - 2220109 + | LysR family transcriptional regulator Shewana3_1875 2222620 - 2220113 - | (NiFe) hydrogenase maturation protein HypF TERM 2704 2221595 - 2221577 - G 76 -6 -4.62069 | opp_overlap 2221579 TGTGTAGGGCAAAAA TATCCCGA GCT TTGGGATA TTAGGCGCAATCTCA TERM 2705 2221850 - 2221864 + g 71 -5.6 -4.56597 | opp_overlap 2221849 2221850 CTTTATCGCAAGAAT CTGCCC TTG GGCCAG TTTTTCGGCCGCCGC TERM 2706 2222620 - 2222645 + r 81 -12.1 -2.53581 | opp_overlap 2222625, overlap 2222608 2222625 CTGGCTGCATCTGCA TGGAAGATAAA ACAT TTTATCTTCCA TGCGTTAGCGCTATC Shewana3_1876 2224542 - 2222692 - | hypothetical protein TERM 2707 2223474 - 2223453 - G 70 -10.1 -3.23984 | opp_overlap 2223470 TAAATTTACCATTAA GCAGCGCTG CAAA CAGGGCTGC ATCCGCTATGGTATG Shewana3_1877 2225101 - 2224523 - | hydrogenase expression/formation protein TERM 2708 2225067 - 2225040 - G 100 -18.6 -4.47551 | ATGTAATTGACAAAA TGTACGCCGATG CCTT CATCGGCGTACA GGACATTGCCAATAC Shewana3_1878 2225783 - 2225109 - | Ni/Fe-hydrogenase, b-type cytochrome subunit Shewana3_1879 2227508 - 2225805 - | nickel-dependent hydrogenase, large subunit Shewana3_1880 2228648 - 2227512 - | hydrogenase (NiFe) small subunit HydA TERM 2709 2228753 - 2228734 - H 70 -8 -3.59698 | opp_overlap 2228734 TTAGGCGACACAGAA TTCTTGAT GCAT ATCAAGAA TTTTCAAGAGATGTG TERM 2710 2228734 - 2228753 + H 76 -8 -4.09243 | opp_overlap 2228734 TTAGGCGACACAGAA TTCTTGAT GCAT ATCAAGAA TTTTCAAGAGATGTG Shewana3_1881 2228984 - 2229466 + | redoxin domain-containing protein Shewana3_1882 2229470 - 2229691 + | putative lipoprotein TERM 2711 2230917 - 2230938 + G 73 -12.3 -2.6574 | overlap 2230921 CGCTACCCGAGTTTG CCAGTGCGG ATTA CCGCATTGG TGATATGAGTGCTTA Shewana3_1883 2229785 - 2231131 + | hypothetical protein Shewana3_1884 2231229 - 2232131 + | ApbE family lipoprotein Shewana3_1885 2232142 - 2232801 + | two component transcriptional regulator Shewana3_1886 2232915 - 2234309 + | ATPase domain-containing protein TERM 2712 2234902 - 2234883 - g 73 -5.6 -4.64861 | CCTGCTGAAAACAAA CCCGCCAC ACCT GTGGTGAG TCCACCTAAGGCGAC mdoG 2234754 - 2236391 + | glucan biosynthesis protein G TERM 2713 2236957 - 2236978 + G 76 -5.2 -4.77036 | gap 1, opp_overlap 2236957 2236975, overlap 2236960 CACAGATCCTGAAAT CGCCCTGTT AGAAG AACAGG-CG TTTTTAGTGCTACGC TERM 2714 2237326 - 2237315 - g 74 -4.4 -4.82901 | TGGTGGGTACAAAAA GAAG GTAA CTTC TGGGGCCATAACGCT Shewana3_1888 2236415 - 2238598 + | glucosyltransferase MdoH TERM 2715 2238694 - 2238659 - f 74 -7.6 -3.90922 | opp_overlap 2238665, overlap 2238665 ATTGTTGTCAAATAA TTGAAATGCCACTGAC GTCT GTCAGTGGCATTTTTG TTTTATCCCTTTGCT TERM 2716 2238665 - 2238688 + F 100 -15.4 -5.54907 | opp_overlap 2238665 2238659 GTCAAATAATTGAAA TGCCACTGAC GTCT GTCAGTGGCA TTTTTGTTTTATCCC TERM 2717 2238688 - 2238665 - f 100 -15.4 -3.89435 | opp_overlap 2238665, overlap 2238659 GTCAAATAATTGAAA TGCCACTGAC GTCT GTCAGTGGCA TTTTTGTTTTATCCC TERM 2718 2239737 - 2239768 + G 70 -4.4 -4.7254 | opp_overlap 2239737 2239752 CTATGCTCGGGCAAA GCTGCTGGCGAA AAATACCC TTAGGCAGCAGC TTTTTACTCGCACCT Shewana3_1889 2238829 - 2240505 + | peptidoglycan binding domain-containing protein TERM 2719 2240645 - 2240658 + G 72 -8.1 -3.95324 | TGACGTTACTTTGTC CTGCC CGTA GGCAG TTGTTGTTAGGCCTC Shewana3_1890 2240629 - 2241177 + | hypothetical protein Shewana3_1891 2241562 - 2241128 - | hypothetical protein TERM 2720 2241670 - 2241660 - H 75 -8.2 -3.84825 | opp_overlap 2241660 2241658 TTGATTCAGATCAAA GCCG CTT CGGC TATTTAACAGGCTAC Shewana3_1892 2241875 - 2242162 + | 50S ribosomal protein L25P TERM 2721 2242198 - 2242184 - T 100 -8.5 -5.28481 | opp_overlap 2242184 GATTGAAGCAAAAAA GCGCC TATAG GGCGC TTTTTTTGTGGCTGT TERM 2722 2242184 - 2242198 + T 100 -9.2 -5.65177 | opp_overlap 2242184 GATTGAAGCAAAAAA GCGCCT ATA GGGCGC TTTTTTTGTGGCTGT TERM 2723 2242266 - 2242242 - T 81 -12.1 -2.55564 | overlap 2242241 2242239 AGAACATAAAATTAT CCCCGCGCAAC CTA ACTACGCGGGG GAGCATCACTTGATA Shewana3_1893 2246621 - 2242272 - | hypothetical protein TERM 2724 2243348 - 2243359 + g 70 -4.4 -4.71426 | overlap 2243340 GACCGCCCAAGTCCA TCGA CATG TCGA TTTTATTGATAAGCG TERM 2725 2244270 - 2244256 - G 70 -8.6 -3.65351 | opp_overlap 2244256 TCATGGGCATCCAAA GGCTTA TAG TAAGCC TTGAGTGTTGACTCC Shewana3_1894 2248393 - 2246618 - | surface antigen (D15) Shewana3_1895 2248595 - 2249626 + | peptidase T2, asparaginase 2 TERM 2726 2249639 - 2249669 + F 95 -14 -2.66316 | opp_overlap 2249638 2249637 2249660, overlap 2249637 TAACCCATATCAATT GCCTTAGCGCACGT GAA GTGAGCGCTAAGGC TCATATCCTCAACGC Shewana3_1896 2249876 - 2250292 + | signal transduction protein TERM 2727 2250380 - 2250419 + F 83 -8.8 -4.20806 | gap 1, overlap 2250376 TACCAATACGTCACG TTCC-TTGCTAGGATCG CTGTTTT CGATGCTAGCAATGGAA TTTGGTTTTGAACTC TERM 2728 2251889 - 2251910 + G 74 -10.1 -3.56821 | overlap 2251907 TTGGGCGTCAGCTAT CGCAGATCC CGGT GGATCCGCG TTTAGCGCGTATGGT TERM 2729 2252483 - 2252465 - g 71 -7.4 -4.07568 | opp_overlap 2252481 GCTGCTGCGCCAAAA TTGAGCCA GAA TGGCTCGA GCCGTTAGCGGCGCA Shewana3_1897 2250421 - 2254302 + | ATP-dependent helicase HrpA TERM 2730 2254394 - 2254375 - f 100 -13.6 -4.30576 | opp_overlap 2254375 TCTTTAGCATTAAAA GCCGAACC TTAG GGTTCGGC TTTTTTATTGATCAT TERM 2731 2254375 - 2254394 + F 100 -13.6 -5.52023 | opp_overlap 2254375 TCTTTAGCATTAAAA GCCGAACC TTAG GGTTCGGC TTTTTTATTGATCAT Shewana3_1898 2255007 - 2255165 + | hypothetical protein Shewana3_1899 2255210 - 2255467 + | NapD family protein Shewana3_1900 2255470 - 2257959 + | nitrate reductase TERM 2732 2258128 - 2258106 - g 79 -12.6 -3.06831 | overlap 2258095 TCAACGTTGAGCCAA CCCCGCCCGC GAT GCAGGCGGTG CTGAACAAAGATATC Shewana3_1901 2257970 - 2258455 + | periplasmic nitrate reductase subunit NapB Shewana3_1902 2258464 - 2259051 + | periplasmic nitrate reductase subunit NapC TERM 2733 2259105 - 2259081 - f 93 -12.2 -3.65351 | opp_overlap 2259081 CCATCTCCAGCCAAA GGCCAAGTGC TCTCC ACACTTGGCC TTTTTTATGAAGTAG TERM 2734 2259081 - 2259105 + F 100 -11.5 -5.26316 | opp_overlap 2259081 CCATCTCCAGCCAAA GGCCAAGTG CTCTCCA CACTTGGCC TTTTTTATGAAGTAG TERM 2735 2260564 - 2260585 + G 79 -5.3 -5.03314 | opp_overlap 2260563 2260566 2260578 CAATATTCAACCAAT TAGTTTTGT GAAA ACAAAATTA TTTTTTGGCACTGAG Shewana3_1903 2259683 - 2261605 + | restriction endonuclease Shewana3_1904 2261679 - 2262101 + | GCN5-related N-acetyltransferase TERM 2736 2262153 - 2262168 + T 81 -11.8 -2.53213 | opp_overlap 2262128 TGACGTCAACCCGCA GCGCGG CATT CCGCGC TAAATTGGGGCGTTA TERM 2737 2262422 - 2262435 + T 100 -9.5 -4.7497 | opp_overlap 2262422 CTCACCCACAAAAAA GGCGC TATT GCGCC TTTTTGATGGATAAA TERM 2738 2262435 - 2262422 - T 100 -9.5 -5.28176 | opp_overlap 2262422 CTCACCCACAAAAAA GGCGC TATT GCGCC TTTTTGATGGATAAA Shewana3_1905 2262698 - 2262462 - | hypothetical protein Shewana3_1906 2263464 - 2262727 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 2739 2263527 - 2263511 - R 100 -10.1 -4.64844 | opp_overlap 2263511 TGTAGATAGACAAAA GGGCTCA CAA CGAGCCC TTGTCATCTGCTTGA TERM 2740 2263511 - 2263527 + r 76 -9.4 -3.49858 | opp_overlap 2263511 TGTAGATAGACAAAA GGGCTC ACAAC GAGCCC TTGTCATCTGCTTGA Shewana3_1907 2264617 - 2263547 - | iron-containing alcohol dehydrogenase Shewana3_1908 2265824 - 2264637 - | DegT/DnrJ/EryC1/StrS aminotransferase TERM 2741 2264795 - 2264838 + g 73 -5.3 -4.63527 | gap 1, opp_overlap 2264806, overlap 2264796 CGGCGATTAATGTGA TTGGCAACGCA-GCAGGGGC CTTAA GCTCCTGAATGTGTTTCCAG TTTTTCAGATAATGC TERM 2742 2265247 - 2265265 + g 77 -8.8 -4.08767 | GTGATCACCGCGCCG CCTTCACC ACA GGTGATGG TTTTAACAGAATCGA TERM 2743 2266214 - 2266200 - R 100 -7.1 -5.83211 | opp_overlap 2266200 CATCAAAATAAAAAA CCTGC ACTGG GCAGG TTTTTGGCGGAGAAA TERM 2744 2266200 - 2266214 + r 78 -7.1 -4.56597 | opp_overlap 2266200 CATCAAAATAAAAAA CCTGC ACTGG GCAGG TTTTTGGCGGAGAAA TERM 2745 2266234 - 2266248 + r 81 -9.2 -3.76968 | opp_overlap 2266233 TGGCGGAGAAAACGT CGCGCT TAT GGCGCG TTTCCTAAATCGATT Shewana3_1909 2266868 - 2266263 - | carbonic anhydrase TERM 2746 2267003 - 2266982 - R 76 -10.2 -3.05384 | opp_overlap 2266982 TGCTGGTCTATCCAA TGTGCCAC AGTGCA GTGGCACA TTGATGATAGGTGCG TERM 2747 2266982 - 2267003 + r 77 -10.2 -3.22298 | opp_overlap 2266982 TGCTGGTCTATCCAA TGTGCCAC AGTGCA GTGGCACA TTGATGATAGGTGCG Shewana3_1910 2267852 - 2267022 - | alpha/beta hydrolase fold TERM 2748 2267495 - 2267479 - G 70 -2.9 -4.75309 | TCAAACCCAATAAAA CTGTCGA GCA TCACCAG TGCATTGACGCGCGC Shewana3_1911 2268706 - 2267918 - | peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins TERM 2749 2268481 - 2268507 + g 82 -12.2 -3.57144 | CTGTGGCGGCGCTGT CCGCCATCGCCT TAA AGGCGAGAGCGG TTTGAGCCTCCAGCA Shewana3_1912 2269845 - 2268700 - | succinyl-diaminopimelate desuccinylase Shewana3_1913 2270246 - 2269842 - | arsenate reductase and related TERM 2750 2270652 - 2270635 - R 100 -12.7 -4.61199 | opp_overlap 2270635 AGCCTATAGATAAAA GCCGAGC AACA GCTCGGC TTTGTGTTTTAGGAA TERM 2751 2270635 - 2270652 + r 100 -12.7 -4.45168 | opp_overlap 2270635 AGCCTATAGATAAAA GCCGAGC AACA GCTCGGC TTTGTGTTTTAGGAA Shewana3_1914 2273367 - 2270695 - | TonB-dependent receptor TERM 2752 2272252 - 2272267 + g 76 -5.4 -4.83169 | gap 1, opp_overlap 2272227 2272251 2272250, overlap 2272253 GGCGCCGGCAAAATC T-CCGCC GAA GGCGGTA TTTTTATCGAACACT TERM 2753 2272253 - 2272265 + g 84 -10.5 -4.03995 | opp_overlap 2272227 2272251 2272250, overlap 2272252 GCGCCGGCAAAATCT CCGCC GAA GGCGG TATTTTTATCGAACA TERM 2754 2273082 - 2273107 + g 74 -8.3 -4.08692 | gap 1, overlap 2273082 TAAAGCCGTGCACTT C-CTGCTGGGTC ATA GACCCACCAGAG TTTTGCGACAGGTTA TERM 2755 2273505 - 2273519 + H 79 -8.6 -4.1043 | TTGTTATTCAATAGC TGCAAC AGT GTTGCA TTTGTAATATTTGAA Shewana3_1915 2274133 - 2275044 + | LysR family transcriptional regulator Shewana3_1916 2275127 - 2276239 + | putative efflux protein TERM 2756 2277581 - 2277595 + G 76 -11.4 -3.21276 | overlap 2277579 TGATTGCCGCTATGG GCACGG CAC CCGTGC TGTTATCACAAACCG TERM 2757 2279133 - 2279145 + G 70 -9.1 -3.61398 | CCTGACGACGGCGCT GGGGA TGA TCCCC TTGTTAACCGACAGA Shewana3_1917 2276236 - 2279343 + | acriflavin resistance protein TERM 2758 2279659 - 2279637 - g 77 -9 -4.11216 | GTGTCATCGTTAAAA GTGCCGACCG TTT CGGTGGGCGC GGGGTACCTCGATAT Shewana3_1918 2279346 - 2280815 + | outer membrane efflux protein TERM 2759 2281277 - 2281290 + G 73 -5.3 -4.68994 | GTGGTGATCTTGCCA CTGAT TTAT ATCAG TTTTTCAATGCTGAT Shewana3_1919 2280935 - 2282218 + | PqiA family integral membrane protein Shewana3_1920 2282229 - 2283893 + | hypothetical protein TERM 2760 2284361 - 2284346 - g 73 -10.4 -3.24924 | overlap 2284344 2284354 2284355 GCCTGATGGATAATA CGCAGC AAGT GCTGCG TGAGCAGCCATTCCA Shewana3_1921 2283895 - 2284494 + | hypothetical protein Shewana3_1922 2286098 - 2284710 - | sodium/sulphate symporter Shewana3_1923 2286178 - 2286990 + | AraC family transcriptional regulator TERM 2761 2286985 - 2286971 - T 89 -7.1 -5.04987 | overlap 2286960 AATACGCCCAAAAAA GCGTG CAAGC CACGC GGTAGTATTACCATA TERM 2762 2287067 - 2287086 + T 72 -9.4 -3.09635 | TTCTTTAAGATAGTT CCTTAAGA TTGC TCTTAAGG TTAGATCGTAGAGAT TERM 2763 2287160 - 2287205 + T 74 -10.5 -2.70022 | opp_overlap 2287164 2287166 2287168 2287195 2287199, overlap 2287159 2287164 CCTTAAGAGCATTCC CAAACAGAGTCCTTTAGTGCT AATC AGCACTAAAGGACACAATTAG ATTGTCTCGAGTAGG TERM 2764 2287201 - 2287164 - T 93 -12.1 -3.59087 | opp_overlap 2287164 2287160 2287159, overlap 2287166 2287168 2287195 2287199 AAGAGCATTCCCAAA CAGAGTCCTTTAGTGCT AATC AGCACTAAAGGACACAA TTAGATTGTCTCGAG TERM 2765 2287164 - 2287201 + T 76 -9.9 -3.26449 | opp_overlap 2287164 2287166 2287168 2287195 2287199, overlap 2287160 2287159 AAGAGCATTCCCAAA CAGAGTCCTTTAGTGCT AATC AGCACTAAAGGACACAA TTAGATTGTCTCGAG TERM 2766 2287199 - 2287166 - T 100 -16.9 -3.36991 | opp_overlap 2287164 2287160 2287159, overlap 2287164 2287168 2287195 GAGCATTCCCAAACA GAGTCCTTTAGTGCT AATC AGCACTAAAGGACAC AATTAGATTGTCTCG TERM 2767 2287197 - 2287168 - T 100 -18.1 -3.25204 | opp_overlap 2287164 2287160 2287159, overlap 2287166 2287164 2287195 GCATTCCCAAACAGA GTCCTTTAGTGCT AATC AGCACTAAAGGAC ACAATTAGATTGTCT Shewana3_1924 2289736 - 2287223 - | glucan 1,4-alpha-glucosidase TERM 2768 2288288 - 2288298 + g 70 -8.2 -3.74251 | opp_overlap 2288287 CCAGCCGAACATGAT CGGC ATC GCCG TTTGGTCGAGCTGTA Shewana3_1925 2291463 - 2289868 - | major facilitator transporter TERM 2769 2290976 - 2290960 - G 100 -6.5 -5.252 | opp_overlap 2290959 GATGCCGATAAAAAA GCTTTGC ATG GCATAGC CTTGGGTGCGCTGTT TERM 2770 2291484 - 2291498 + H 84 -11.4 -3.17798 | TTCCCTTCAGTAGCG GGCAGC GGG GCTGCC TTGAGTCATTTATCG TERM 2771 2291648 - 2291612 - H 100 -15.4 -5.0538 | opp_overlap 2291611 GTGTAGGTGAAAAAA TGGCGAATATACCTCT CCCTC AGAAGCATATTCGCCA ATAAATTCATTTTCA Shewana3_1926 2292205 - 2292483 + | YCII-related Shewana3_1927 2292511 - 2292987 + | GCN5-related N-acetyltransferase Shewana3_1928 2293035 - 2293550 + | hypothetical protein TERM 2772 2293686 - 2293721 + T 78 -9.8 -3.53091 | gap 1, opp_overlap 2293686, overlap 2293690 ACTGCTGCGAGTACA GGTAGCGAGGGCAC-TA GAG TAGGTGCCCTTGCTGGC TTTGAAGAACAGGCT TERM 2773 2293690 - 2293717 + T 80 -11.4 -2.64155 | gap 1, opp_overlap 2293686, overlap 2293686 CTGCGAGTACAGGTA GCGAGGGCAC-TA GAG TAGGTGCCCTTGC TGGCTTTGAAGAACA Shewana3_1929 2294205 - 2293756 - | alkylhydroperoxidase TERM 2774 2294124 - 2294111 - G 73 -5.2 -4.64144 | opp_overlap 2294111 AATAATGGCGAAAAA GCCG AGTCAG CGGC TGCTTTATCTAGGCT Shewana3_1930 2295132 - 2294242 - | AraC family transcriptional regulator TERM 2775 2295281 - 2295310 + r 100 -16.7 -3.4072 | opp_overlap 2295281, overlap 2295302 CTCAATAATAAAAAA TAGTCACCAAGAA GTGC TTCTTGGTGACTA TTGTAATGGCCACTA TERM 2776 2295310 - 2295281 - R 100 -16.7 -5.64873 | opp_overlap 2295281 2295302 CTCAATAATAAAAAA TAGTCACCAAGAA GTGC TTCTTGGTGACTA TTGTAATGGCCACTA Shewana3_1931 2297504 - 2295393 - | alpha-glucosidase TERM 2777 2297873 - 2297887 + G 90 -10 -4.49939 | opp_overlap 2297872 2297871 ACTGCAAAGAAATGC TGCACC TAA GGTGCA TTTTGTCGATTGTGT TERM 2778 2297927 - 2297942 + G 70 -4.7 -4.59773 | GATGCAGCAACTTAG CCTTG AGTTAG CAAGG TTTTTCCCCCTGCCG Shewana3_1932 2297754 - 2298578 + | hypothetical protein Shewana3_1933 2298690 - 2299220 + | NUDIX hydrolase Shewana3_1934 2299934 - 2299251 - | hemolysin III family channel protein TERM 2779 2299873 - 2299889 + g 76 -5.1 -4.75372 | overlap 2299846 TCACTAAGGCTATAG CCACTGA TAT TCAATGG TTTTTCATGACTCAT TERM 2780 2299999 - 2300020 + H 100 -10.3 -4.64861 | opp_overlap 2299992 2299999 ATTGGAAAGCCATAA TTAGCTTAC ACGT GTAAGCTAA TTTATTTTAAGGACC TERM 2781 2300020 - 2299999 - H 80 -10.3 -3.47617 | opp_overlap 2299999, overlap 2299992 ATTGGAAAGCCATAA TTAGCTTAC ACGT GTAAGCTAA TTTATTTTAAGGACC TERM 2782 2300130 - 2300140 + H 71 -6.8 -4.11404 | overlap 2300129 ACGCCTTGGAACTTT GTGC TGC GCAC TTTCTCTAATCTCCC Shewana3_1935 2300304 - 2301413 + | hypothetical protein TERM 2783 2301919 - 2301901 - g 79 -11.6 -3.60805 | ACACCCTAGGGCAAA CGAGCCGC CGT GCGGCGCG CGCCCAGGCCCAAGC TERM 2784 2303254 - 2303236 - g 75 -10.4 -3.34404 | opp_overlap 2303216, overlap 2303234 2303243 TTATCAAGGAGAATA TGGATAAG CAG CTTATCCA CTGCGCCGAGGCGCC Shewana3_1936 2301846 - 2304008 + | thiamine biosynthesis protein ThiC TERM 2785 2304552 - 2304539 - g 86 -8.1 -4.68124 | CCAATACACACAAAA GCAGC GTTC GCTGC TGCGGCAATGCAACT Shewana3_1937 2304011 - 2305693 + | thiamine-phosphate pyrophosphorylase Shewana3_1938 2305690 - 2306706 + | UBA/THIF-type NAD/FAD binding protein Shewana3_1939 2306703 - 2306906 + | thiamine biosynthesis protein ThiS thiG 2306908 - 2307666 + | thiazole synthase thiH 2307669 - 2308784 + | thiamine biosynthesis protein ThiH TERM 2786 2309031 - 2309020 - g 71 -7.2 -4.03234 | CTGCGCCCACAGAAA CCGC TAAA GCGG TAGATGAACCCGATA Shewana3_1942 2308896 - 2309159 + | methyl-accepting chemotaxis protein Shewana3_1943 2309162 - 2311384 + | protein-glutamate O-methyltransferase Shewana3_1944 2312461 - 2311559 - | LysR family transcriptional regulator TERM 2787 2312524 - 2312536 + r 75 -3.3 -5.11613 | TGAGGCTTATAGTGG CGAGC TAT GATCG TTTTTTCAATACTAT Shewana3_1945 2313834 - 2312635 - | hypothetical protein TERM 2788 2312915 - 2312894 - GR 71 -5.1 -4.46212 | opp_overlap 2312894 2312897, overlap 2312898 CCCGCTAGCAGAAAA CTAATGCCG ACTT CGGCAATAA TATCATCGGTCGCAT TERM 2789 2312911 - 2312898 - GR 72 -8.1 -3.77302 | opp_overlap 2312897 2312894, overlap 2312894 CTAGCAGAAAACTAA TGCCG ACTT CGGCA ATAATATCATCGGTC Shewana3_1946 2315701 - 2313761 - | response regulator receiver protein TERM 2790 2315571 - 2315556 - GR 78 -10.4 -3.40403 | CGGGTGCGAGCATAA CTGGCG AAGG CGCCAG CCAAATCGATATTGG Shewana3_1947 2316620 - 2315676 - | alpha-L-glutamate ligase-like protein TERM 2791 2315764 - 2315774 + gr 74 -6.8 -4.35926 | ACATGCTTAAGTCTA GGCA AAA TGCC TTTTCCATTTGCAAT Shewana3_1948 2318128 - 2316620 - | hypothetical protein TERM 2792 2317479 - 2317438 - G 82 -13.1 -3.46873 | gap 1, overlap 2317436 CCAAATCGAATAAGA CCCACTCG-CCGTTATGGAA CAC TTCCACAAAGGGCGAGAGGG ATTGACGGCGGCGTT TERM 2793 2318320 - 2318342 + r 77 -4.8 -5.03314 | opp_overlap 2318323, overlap 2318323 2318325 TATGCTCAGCTTGTA AAACGGCTTG GCT CAAGCGGTTA TTTTTTGCCGCTGGA TERM 2794 2318323 - 2318339 + r 77 -6.5 -4.62085 | opp_overlap 2318323, overlap 2318320 2318325 GCTCAGCTTGTAAAA CGGCTTG GCT CAAGCGG TTATTTTTTGCCGCT Shewana3_1949 2319161 - 2318340 - | hypothetical protein Shewana3_1950 2320237 - 2319245 - | putative methyltransferase Shewana3_1951 2320992 - 2320234 - | putative methyltransferase TERM 2795 2320359 - 2320369 + g 76 -8.2 -4.26079 | TCATCACGTTTTCGA GCGC GCT GCGC TTTTGACTGATTTCG TERM 2796 2321211 - 2321238 + G 73 -11.4 -2.91276 | overlap 2321210 AGTCACTGATTGTGG TGATGGGGGAAG ACAG CTTTCCCTATCA GTTTGTCGACAACGA TERM 2797 2323908 - 2323896 - g 71 -6.2 -4.30014 | opp_overlap 2323896 2323897, overlap 2323889 2323897 TGTATCAAGCCAAAA CGGC GGGTG GCCG TTGCTACCGCCTAGC Shewana3_1952 2321114 - 2323927 + | diguanylate cyclase TERM 2798 2324028 - 2324053 + F 77 -6.2 -4.6709 | overlap 2324029 GAAGTACTTTGGTAA TCGGCATTAT TTGACT ATAATGCCGC TTTTATCTCGTTTTG TERM 2799 2324029 - 2324052 + F 76 -9.7 -3.38627 | overlap 2324028 AAGTACTTTGGTAAT CGGCATTAT TTGACT ATAATGCCG CTTTTATCTCGTTTT aspS 2324112 - 2325887 + | aspartyl-tRNA synthetase TERM 2800 2325903 - 2325929 + F 81 -7.3 -4.58663 | gap 1, overlap 2325906 2325908 TCTTTAGTGATTATC GAGTACCGAGGC GCAA GCCTCGGT-CTA TTTTTACCCCGTCAT TERM 2801 2325906 - 2325927 + F 84 -10.1 -3.90762 | overlap 2325903 2325908 TTAGTGATTATCGAG TACCGAGGC GCAA GCCTCGGTC TATTTTTACCCCGTC TERM 2802 2325908 - 2325925 + F 100 -12.7 -3.53855 | overlap 2325906 2325903 AGTGATTATCGAGTA CCGAGGC GCAA GCCTCGG TCTATTTTTACCCCG Shewana3_1954 2326104 - 2326850 + | hypothetical protein TERM 2803 2326891 - 2326916 + F 76 -10.5 -3.05384 | opp_overlap 2326898, overlap 2326894 2326908 CTGAGTAGGTGGCCG GAACTGAGCTC GACA GAGCTTGGTTC TTACATAGAGCAAGC Shewana3_1955 2327092 - 2327613 + | crossover junction endodeoxyribonuclease RuvC Shewana3_1956 2327610 - 2328227 + | Holliday junction DNA helicase RuvA TERM 2804 2328259 - 2328271 + F 70 -5.5 -4.57341 | AAGGCTAGTGTTATA TTGCG GTA CGCGA TTTTTGCAGCCAGTT ruvB 2328348 - 2329352 + | Holliday junction DNA helicase B TERM 2805 2329378 - 2329403 + F 100 -16.3 -4.66264 | opp_overlap 2329384, overlap 2329384 GGATGACCTTGTTAA CAAAAAGCGGC CTTG GCCGCTTTTTG TTTTTACCGATTTTA TERM 2806 2329384 - 2329397 + F 100 -9.5 -5.61881 | opp_overlap 2329384, overlap 2329378 CCTTGTTAACAAAAA GCGGC CTTG GCCGC TTTTTGTTTTTACCG TERM 2807 2329397 - 2329384 - f 100 -9.5 -5.06414 | opp_overlap 2329378 2329384 CCTTGTTAACAAAAA GCGGC CTTG GCCGC TTTTTGTTTTTACCG TERM 2808 2330019 - 2330009 - f 81 -5.4 -5.1101 | opp_overlap 2330010, overlap 2330010 2330011 TTATCATGCAAAAAA GTGT GAC ACAC ATCACATATTTGAGG TERM 2809 2330242 - 2330212 - f 82 -3.4 -5.58209 | TTAAAGTTAAAAAAA TGAAGATTGACT GAATGAA AGTGAATCCTCA GTATCAAGCGCAACA Shewana3_1958 2330327 - 2332888 + | TonB-dependent receptor TERM 2810 2332928 - 2332915 - f 100 -9.5 -4.62872 | opp_overlap 2332915 ACCAACCTTTAAAAA GCGCC TTCG GGCGC TTTTTTGTTTTGGTG TERM 2811 2332915 - 2332928 + F 100 -9.5 -5.83211 | opp_overlap 2332915 ACCAACCTTTAAAAA GCGCC TTCG GGCGC TTTTTTGTTTTGGTG Shewana3_1959 2333086 - 2333766 + | two component transcriptional regulator TERM 2812 2334902 - 2334876 - g 74 -11.7 -2.85297 | gap 1, opp_overlap 2334875 2334874, overlap 2334871 2334873 TTACGCTAAAGACGA GCCA-GGTCAAG CCAA CTTGACCGTGGC CTCTAATTGGGTAGC Shewana3_1960 2333947 - 2335074 + | peptidase M14, carboxypeptidase A Shewana3_1961 2335083 - 2335400 + | hypothetical protein Shewana3_1962 2335397 - 2335678 + | hypothetical protein TERM 2813 2335729 - 2335702 - T 100 -11.4 -3.94 | opp_overlap 2335708, overlap 2335708 TTAATGCTTAAACAA CAAAAAGCCCAC GAAT GTGGGCTTTTTC ATGCGTAACGTTTCG TERM 2814 2335708 - 2335723 + T 100 -10.4 -4.7497 | opp_overlap 2335708 2335702 CTTAAACAACAAAAA GCCCAC GAAT GTGGGC TTTTTCATGCGTAAC TERM 2815 2335723 - 2335708 - T 100 -10.4 -5.38549 | opp_overlap 2335708, overlap 2335702 CTTAAACAACAAAAA GCCCAC GAAT GTGGGC TTTTTCATGCGTAAC ansA 2336762 - 2335749 - | cytoplasmic asparaginase I TERM 2816 2336825 - 2336851 + r 71 -9.5 -3.01783 | opp_overlap 2336830, overlap 2336830 GGCATAAACCCAATA AAAAAGCCCGA GGCAA TCGGGCTTTTG TGTCCTTCATTTTGA TERM 2817 2336846 - 2336830 - R 100 -9.4 -5.52096 | opp_overlap 2336825 2336830 AAACCCAATAAAAAA GCCCGA GGCAA TCGGGC TTTTGTGTCCTTCAT TERM 2818 2336830 - 2336846 + r 100 -9.4 -4.62002 | opp_overlap 2336830, overlap 2336825 AAACCCAATAAAAAA GCCCGA GGCAA TCGGGC TTTTGTGTCCTTCAT Shewana3_1964 2338718 - 2336874 - | signal peptide peptidase SppA, 67K type TERM 2819 2337479 - 2337466 - G 70 -8.1 -3.68024 | GTTGCGAAGATATAA TCGGC GCTA GCCGA AATCCAGTAGCCGCC TERM 2820 2340068 - 2340087 + G 71 -5.6 -4.56775 | GGTGTATGCGGCCAT GCGTGGCC ATGA GGTCGTGC TTTTTGAAGCAAAAT Shewana3_1965 2338884 - 2340902 + | 2,4-dienoyl-CoA reductase TERM 2821 2340920 - 2340957 + T 100 -14.5 -3.10775 | gap 1, opp_overlap 2340929, overlap 2340929 GTTAAGCTATTTCAC CAAT-AAAAAGCCTGAGT TTA ACTCAGGCTTTTTTGTTG ATTTTGACTCAGGCT TERM 2822 2340929 - 2340947 + T 100 -13.2 -5.61689 | opp_overlap 2340929, overlap 2340920 TTTCACCAATAAAAA GCCTGAGT TTA ACTCAGGC TTTTTTGTTGATTTT TERM 2823 2340947 - 2340929 - T 100 -13.2 -5.1356 | opp_overlap 2340929 2340920 TTTCACCAATAAAAA GCCTGAGT TTA ACTCAGGC TTTTTTGTTGATTTT Shewana3_1966 2341482 - 2341027 - | hypothetical protein Shewana3_1967 2342080 - 2341670 - | ferredoxin nrdB 2343272 - 2342097 - | ribonucleotide-diphosphate reductase subunit beta TERM 2824 2343270 - 2343247 - G 90 -13.2 -3.66018 | gap 1, overlap 2343248 CGAGTATTCCAATAA GTCGGGATCCC AAA GGGATCCCG-C AACCGTTAACATTGA TERM 2825 2343270 - 2343248 - G 79 -13.4 -2.79289 | overlap 2343247 GAGTATTCCAATAAG TCGGGATCCC AAA GGGATCCCGC AACCGTTAACATTGA Shewana3_1969 2345577 - 2343289 - | ribonucleotide-diphosphate reductase subunit alpha TERM 2826 2345863 - 2345844 - R 77 -5 -5.02323 | overlap 2345846 TGAGGATAAAGAAAA GCGTTAGT GATG ACTAACCC TGAAGCTCAAATTGA Shewana3_1970 2346737 - 2346063 - | HAD family hydrolase TERM 2827 2346596 - 2346579 - G 70 -8.4 -3.78597 | opp_overlap 2346594, overlap 2346573 ATCGACTAAGGCAAA GCTGCC ATGGGA GGCAGC GCTACGCATATCTGC Shewana3_1971 2347449 - 2346739 - | 3-demethylubiquinone-9 3-methyltransferase TERM 2828 2349991 - 2349965 - g 73 -9.4 -3.71353 | overlap 2349956 2349985 AAAGAAGGCGAAGAA GTCGCCGTACTC GAT GAAAACGGCAAC GCAGTGCTGGACGAA Shewana3_1972 2347835 - 2350591 + | DNA gyrase subunit A TERM 2829 2350608 - 2350629 + F 100 -15.9 -5.52384 | opp_overlap 2350608 TCGAGAGTATGAAAA CGAGCGTCC AATT GGACGCTCG TTTTTTTCATGGCAA TERM 2830 2350629 - 2350608 - f 100 -15.9 -4.33274 | opp_overlap 2350608 TCGAGAGTATGAAAA CGAGCGTCC AATT GGACGCTCG TTTTTTTCATGGCAA Shewana3_1973 2350697 - 2351788 + | phosphoserine aminotransferase TERM 2831 2351881 - 2351898 + T 100 -9.9 -5.5604 | opp_overlap 2351881 AAGTGAGAAAAAAAA CGAATGC CTAG GCATTCG TTTTTTATTGGTTGC TERM 2832 2351898 - 2351881 - T 100 -9.9 -5.97575 | opp_overlap 2351881 AAGTGAGAAAAAAAA CGAATGC CTAG GCATTCG TTTTTTATTGGTTGC Shewana3_1974 2353202 - 2352012 - | aromatic amino acid aminotransferase TERM 2833 2353433 - 2353447 + H 87 -6.4 -5.14563 | opp_overlap 2353444 2353445, overlap 2353445 ACTTGAGTAATTTTC CGGTTT AAA AAGCCG TTTTTTAGTAAAAAA TERM 2834 2353466 - 2353444 - H 82 -7.8 -4.56597 | opp_overlap 2353433 2353445, overlap 2353445 TTTCCGGTTTAAAAA GCCGTTTTTT AGT AAAAAACGGT TGAATCCTGCGTCAC TERM 2835 2353465 - 2353445 - H 86 -11.3 -3.33744 | opp_overlap 2353433 2353445, overlap 2353444 TTCCGGTTTAAAAAG CCGTTTTTT AGT AAAAAACGG TTGAATCCTGCGTCA TERM 2836 2353445 - 2353465 + H 84 -11.3 -3.10164 | opp_overlap 2353444 2353445, overlap 2353433 TTCCGGTTTAAAAAG CCGTTTTTT AGT AAAAAACGG TTGAATCCTGCGTCA Shewana3_1975 2353638 - 2354918 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2837 2355181 - 2355163 - g 75 -10.4 -3.47349 | overlap 2355156 CTGGTAAAGGGACAA TTAGCCAA TTA TTGGCTAA GCATCTCGGATGGCA Shewana3_1976 2355102 - 2355794 + | cytidylate kinase TERM 2838 2355810 - 2355777 - f 71 -3.3 -4.91873 | gap 1, opp_overlap 2355785 2355788, overlap 2355778 TACATCAACCAAAAA TTATCCCA-CAATAAC TAA GTTATTGTTTGGATAG GTATTCGTATTAAGG TERM 2839 2355785 - 2355801 + F 70 -8.1 -3.68506 | opp_overlap 2355778 2355777, overlap 2355788 CCAAAAATTATCCCA CAATAAC TAA GTTATTG TTTGGATAGGTATTC rpsA 2355897 - 2357564 + | 30S ribosomal protein S1 TERM 2840 2357577 - 2357596 + F 72 -9.3 -3.09759 | overlap 2357591 TAATCGCCTGTTGTA TGGGGAG TTTTTT CTCCCCA TTAGGTGACTGTGTT Shewana3_1978 2357638 - 2357925 + | integration host factor, beta subunit TERM 2841 2357959 - 2357944 - f 82 -6 -4.91511 | opp_overlap 2357936 2357944 ACCGCATTACAAAAA GCCTCC GTAA GGGGGC TTTTTTATATCTAAT TERM 2842 2357944 - 2357959 + F 100 -8.2 -5.43414 | opp_overlap 2357944, overlap 2357936 ACCGCATTACAAAAA GCCTCC GTAA GGGGGC TTTTTTATATCTAAT TERM 2843 2358299 - 2358280 - g 82 -7.2 -4.59342 | GCGACCAGAAAGAAA TTAACGGT CCAA ACCGCTAA AACTCCTCAAGGTGT Shewana3_1979 2358049 - 2358324 + | hypothetical protein Shewana3_1980 2358326 - 2359486 + | hypothetical protein Shewana3_1981 2359529 - 2360224 + | orotidine-5'-phosphate decarboxylase Shewana3_1982 2360297 - 2361124 + | short chain dehydrogenase Shewana3_1983 2361184 - 2361726 + | hypothetical protein TERM 2844 2361787 - 2361806 + F 100 -10.8 -5.4505 | opp_overlap 2361787 CTGGCTACACTAAAA CCCTTAAG GCAA CTTAAGGG TTTTTTATTGCCCGC TERM 2845 2361806 - 2361787 - f 100 -10.8 -4.34402 | opp_overlap 2361787 CTGGCTACACTAAAA CCCTTAAG GCAA CTTAAGGG TTTTTTATTGCCCGC Shewana3_1984 2361944 - 2363701 + | acyl-CoA dehydrogenase domain-containing protein TERM 2846 2363741 - 2363769 + T 100 -11.9 -4.95957 | opp_overlap 2363747, overlap 2363747 TCGAATTAACCCAAT AAAAAAGCACTGA TAT TCAGTGCTTTTTC TTTTTAATTGCTTTG TERM 2847 2363747 - 2363763 + T 100 -10.9 -5.67529 | opp_overlap 2363747, overlap 2363741 TAACCCAATAAAAAA GCACTGA TAT TCAGTGC TTTTTCTTTTTAATT TERM 2848 2363763 - 2363747 - T 100 -10.9 -5.5074 | opp_overlap 2363747 2363741 TAACCCAATAAAAAA GCACTGA TAT TCAGTGC TTTTTCTTTTTAATT Shewana3_1985 2365352 - 2363811 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase Shewana3_1986 2365555 - 2365379 - | hypothetical protein TERM 2849 2365638 - 2365658 + H 70 -2.5 -4.99645 | CTAAGGTAGAAGCCC TGTTTTGTG ACT CACACACCA TTTTGTTTATGGCCT TERM 2850 2365759 - 2365775 + H 71 -10.1 -2.57988 | opp_overlap 2365759, overlap 2365754 AATAGAGGCATAGAA GCCTGCA ATT TGCGGGC TCAATTGCTGCATTT Shewana3_1987 2365947 - 2366279 + | hypothetical protein pssA 2366291 - 2367604 + | phosphatidylserine synthase TERM 2851 2367609 - 2367646 + T 100 -24.5 -3.09135 | opp_overlap 2367620, overlap 2367614 2367620 GCATTCTCTAATCGC CCCAATAAAAAGCCCAC GAAT GTGGGCTTTTTATTGGG TGTCTTGCCAATTAT TERM 2852 2367614 - 2367641 + T 100 -15.8 -3.19175 | opp_overlap 2367620, overlap 2367609 2367620 CTCTAATCGCCCCAA TAAAAAGCCCAC GAAT GTGGGCTTTTTA TTGGGTGTCTTGCCA TERM 2853 2367635 - 2367620 - T 100 -10.4 -5.06414 | opp_overlap 2367614 2367609 2367620 TCGCCCCAATAAAAA GCCCAC GAAT GTGGGC TTTTTATTGGGTGTC TERM 2854 2367620 - 2367635 + T 100 -10.4 -5.12068 | opp_overlap 2367620, overlap 2367614 2367609 TCGCCCCAATAAAAA GCCCAC GAAT GTGGGC TTTTTATTGGGTGTC emrD 2368902 - 2367658 - | multidrug resistance protein D TERM 2855 2367948 - 2367936 - G 78 -2 -5.2853 | overlap 2367938 CACTGAAAAACAAAA TTGA GCCTA TCAA TAAACTCCAACCCAC TERM 2856 2368242 - 2368229 - G 74 -8.1 -4.11773 | AAATAGGCTCGAAAA CTGCG GTGG CGCAG TACATGTCGATAGGA TERM 2857 2368847 - 2368863 + g 78 -5.7 -4.87786 | TGAGTGGCGCTGCCT GCGGCGG GTG TCGGCGC TTTTTGTGAGATTAA TERM 2858 2369004 - 2369015 + r 71 -3 -4.98522 | CGAATATTTTTTAAT CTTA TTCA TAAG TTTTTCTATCGAATT TERM 2859 2369255 - 2369229 - R 100 -16 -4.99435 | opp_overlap 2369236 2369251 GTTAACAATTAAAAA GATGGAAAGCAG AAT CTGCCTTCCATC GAATGAGGGTTGCTA ampC 2370493 - 2369276 - | beta-lactamase TERM 2860 2370526 - 2370550 + H 73 -8.5 -3.57792 | opp_overlap 2370526 GATGGCATGATTGAA CGGCACGGGTT AAC AATCTGCGCCG TTTGAAACTCGATAA Shewana3_1991 2370904 - 2371668 + | DTW domain-containing protein TERM 2861 2371685 - 2371718 + F 70 -7.5 -3.87576 | overlap 2371686 GCTAGTTAGTTTTTA ATCCCCCAAGAGT ACACTGAC ACTTTTGGGGGAA TTTCACTTGTTATCA TERM 2862 2371686 - 2371717 + F 79 -11 -2.91822 | overlap 2371685 CTAGTTAGTTTTTAA TCCCCCAAGAGT ACACTGAC ACTTTTGGGGGA ATTTCACTTGTTATC Shewana3_1992 2371929 - 2373185 + | secretion protein HlyD family protein TERM 2863 2374330 - 2374342 + G 79 -9.1 -4.21408 | AATTGGGACCTTAGC GGCCA TGC TGGCC TTTGGTTTTACCATT TERM 2864 2376313 - 2376302 - g 74 -2.2 -5.13722 | CCTATTAAAACAAAA GAGC AATT ACTC CTAGATCAAGAAACC Shewana3_1993 2373185 - 2376352 + | acriflavin resistance protein TERM 2865 2376671 - 2376684 + G 72 -9.5 -3.36175 | opp_overlap 2376671 2376670 TCTGGATTTGCAAAT GGCGC AGTC GCGCC TTCTCGCTGCACGTT Shewana3_1994 2376345 - 2377832 + | outer membrane efflux protein TERM 2866 2377853 - 2377837 - T 100 -13.7 -5.4833 | opp_overlap 2377837 TCAGTGAATAAAAAA TCCCCGC ATG GCGGGGA TTTTTATCGGGTTTA TERM 2867 2377837 - 2377853 + T 100 -13.7 -4.89393 | opp_overlap 2377837 TCAGTGAATAAAAAA TCCCCGC ATG GCGGGGA TTTTTATCGGGTTTA Shewana3_1995 2379940 - 2377883 - | hypothetical protein Shewana3_1996 2381247 - 2380138 - | phage integrase family protein TERM 2868 2380923 - 2380935 + g 73 -6.3 -4.47707 | GCTGAGTCCCACTGC TTGCT TGG AGCAA TTCTTTTTGATGACC TERM 2869 2381298 - 2381340 + H 72 -6.5 -4.32763 | gap 1, overlap 2381294 2381300 2381304 ATACGTAAAACCAGC CTTTATCTACCAGTGATAAT CGTC ATTATCACTGGTAG-TGCTG TTGTTTGTATTTTAA TERM 2870 2381300 - 2381338 + H 70 -7.7 -3.73788 | gap 1, overlap 2381298 2381294 2381304 ACGTAAAACCAGCCT TTATCTACCAGTGATAAT CGTC ATTATCACTGGTAG-TGC TGTTGTTTGTATTTT TERM 2871 2381304 - 2381335 + H 100 -17.6 -2.93099 | overlap 2381300 2381298 2381294 AAAACCAGCCTTTAT CTACCAGTGATAAT CGTC ATTATCACTGGTAG TGCTGTTGTTTGTAT TERM 2872 2381600 - 2381610 + H 70 -5.4 -4.42788 | opp_overlap 2381600 2381598 TTTATTTTTAAAAGA TGGT TTA ACCA TTTTATAAAGTTGAA TERM 2873 2381798 - 2381788 - H 70 -5.4 -4.48823 | opp_overlap 2381785 2381788 AATGAACTCATAAAA TGGT GTA ACCA TTCTTTTAATCTATA Shewana3_1997 2381875 - 2382375 + | hypothetical protein Shewana3_1998 2382530 - 2382856 + | hypothetical protein Shewana3_1999 2382945 - 2384921 + | ATP-dependent DNA helicase RecQ TERM 2874 2384929 - 2384952 + T 100 -14 -4.03234 | opp_overlap 2384929 CTTGCTGAAAAAAAA GGGCATATCT TGTA AGATATGCCC TTTATATCACCGCAG TERM 2875 2384952 - 2384929 - T 100 -14 -5.75342 | opp_overlap 2384929 CTTGCTGAAAAAAAA GGGCATATCT TGTA AGATATGCCC TTTATATCACCGCAG Shewana3_2000 2385556 - 2385005 - | ecotin precursor TERM 2876 2386088 - 2386109 + G 74 -3.7 -4.91357 | gap 1, overlap 2386090 2386091 CCGGGGTACGTTTGC GCTGCCTTTT ATT AAATGGC-GC TTTTATTATGTATTT Shewana3_2001 2385894 - 2386331 + | hypothetical protein Shewana3_2002 2387763 - 2386366 - | peptidyl-dipeptidase A Shewana3_2003 2388242 - 2387814 - | glycerol-3-phosphate cytidylyltransferase Shewana3_2004 2389732 - 2388239 - | nucleotidyl transferase Shewana3_2005 2391692 - 2389743 - | WecB/TagA/CpsF family glycosyl transferase TERM 2877 2390740 - 2390751 + g 70 -3 -4.77157 | overlap 2390743 AGCACGGCAGCGCCA GATT GATT AATC TTTTTAATCACTTGC TERM 2878 2391257 - 2391244 - G 70 -8.1 -3.69483 | overlap 2391231 2391230 2391242 AGGCTATTCAAAATA GCGCT TAGC AGCGC AAAGAAGTAACGGCT TERM 2879 2391849 - 2391875 + r 100 -14.6 -3.09831 | overlap 2391846 TGGACTAAGTGGTTT TTTGCAGTTTGC TTT GCAAGCTGCAAA TCCTTTTGAGATGGA TERM 2880 2392041 - 2392015 - R 100 -16.6 -4.48741 | opp_overlap 2392019, overlap 2392016 TAACCTACGACAAAA GCAAGGCGGCTC ACT GAGCCGCCTTGA ATCTGTACGATGAAT TERM 2881 2392040 - 2392016 - R 100 -20.1 -3.28522 | opp_overlap 2392019, overlap 2392015 AACCTACGACAAAAG CAAGGCGGCTC ACT GAGCCGCCTTG AATCTGTACGATGAA TERM 2882 2392019 - 2392037 + r 100 -16 -3.16177 | opp_overlap 2392016 2392015 CTACGACAAAAGCAA GGCGGCTC ACT GAGCCGCC TTGAATCTGTACGAT Shewana3_2006 2393142 - 2392087 - | glycosyl transferase family protein TERM 2883 2392803 - 2392818 + g 72 -4 -4.88736 | gap 1 AACGCGAGAAGCTGA TC-CCCA CCT TGGGCGA TTTTTGTAGATGATC Shewana3_2007 2394467 - 2393139 - | polysaccharide biosynthesis protein Shewana3_2008 2396018 - 2394723 - | hypothetical protein TERM 2884 2394758 - 2394776 + gr 71 -6.7 -4.23486 | gap 1, overlap 2394760 CTTGTGATAAGCGCT GCTGGCGA AGGG TCGCC-GC TTGTTTTGCCTGATT Shewana3_2009 2397385 - 2395973 - | hypothetical protein TERM 2885 2396153 - 2396173 + gr 71 -9.7 -2.61831 | opp_overlap 2396153, overlap 2396152 2396151 2396155 CGGGTAAGCGGAAAA GATGTCGGC TTT GCCCACATC AATTTTTGCAATGGC TERM 2886 2396173 - 2396153 - GR 88 -9.7 -4.19238 | opp_overlap 2396152 2396151 2396153 2396155 CGGGTAAGCGGAAAA GATGTCGGC TTT GCCCACATC AATTTTTGCAATGGC Shewana3_2010 2398720 - 2397452 - | polysaccharide export protein TERM 2887 2397999 - 2397975 - G 80 -4.9 -5.19261 | AAATCCAGTAAAAAA TGCTGTTGACC GCG GATCACCCGCA CTTGACGGATATCGG Shewana3_2011 2399153 - 2398758 - | anti-sigma-factor antagonist TERM 2888 2399280 - 2399307 + r 100 -14.9 -2.79302 | opp_overlap 2399280 GAACATGAAACGAAA CCTAGCGGTGG AAATTC CCGCCGCTAGG TATGATGGAAATGAT TERM 2889 2399307 - 2399280 - R 100 -13.4 -4.14345 | opp_overlap 2399280 GAACATGAAACGAAA CCTAGCGGTGGA AATT CCCGCCGCTAGG TATGATGGAAATGAT Shewana3_2012 2399720 - 2399325 - | putative anti-sigma regulatory factor, serine/threonine protein kinase Shewana3_2013 2400952 - 2399717 - | response regulator receiver modulated serine phosphatase TERM 2890 2400420 - 2400436 + g 72 -9.5 -3.36175 | TCCCTTGGCAAGGTT TTACTGC GGG GCAGTAA TTCTCGCTGCACCTT Shewana3_2014 2401261 - 2402163 + | phosphonate ABC transporter, periplasmic phosphonate-binding protein TERM 2891 2402531 - 2402506 - g 75 -10.5 -3.47526 | opp_overlap 2402528, overlap 2402498 2402504 GGATCAAGTCAAAGA TGGGATCTTCG ATCT CGAATATCCCA TTGAAGTCAATGGCT TERM 2892 2403233 - 2403222 - g 73 -5.8 -4.53439 | CGAAACGCAAAGAAA TCGC CGCA GCGA AAACCGAGTCAGTGT TERM 2893 2403558 - 2403571 + G 70 -4.5 -4.59511 | AACTCGGGGATGAAG TGCTG TTTA CGGCA TTTTTACGGGATATT Shewana3_2015 2402165 - 2405524 + | putative PAS/PAC sensor protein Shewana3_2016 2405533 - 2407014 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 2894 2407090 - 2407073 - T 75 -8.5 -3.76607 | overlap 2407076 CAACAGATAGCTAAA CAATGTG CTTT CACATTG AACGTCAACAGTGTC Shewana3_2017 2408873 - 2407242 - | methyl-accepting chemotaxis sensory transducer TERM 2895 2407424 - 2407438 + g 74 -11.4 -3.09492 | ATTGTTCGCTCGATG CCGTGG CAA CCACGG TATTAACATTGGAAA TERM 2896 2410375 - 2410362 - g 80 -2.4 -5.50723 | TGATCAAAACAAAAA CTCA ATTATG TGAG TGGCTGCATATCAGC Shewana3_2018 2409833 - 2410414 + | hypothetical protein TERM 2897 2412641 - 2412659 + GF 73 -8.2 -3.62849 | overlap 2412642 AACTGGGGCCATTTT TCTTGTTG CAT CAACAAGG TTCTAGTTTAGTAGC TERM 2898 2412642 - 2412658 + GF 70 -9.5 -2.77227 | overlap 2412641 ACTGGGGCCATTTTT CTTGTTG CAT CAACAAG GTTCTAGTTTAGTAG Shewana3_2019 2410411 - 2412951 + | hypothetical protein Shewana3_2020 2412921 - 2416034 + | phage integrase family protein Shewana3_2021 2417028 - 2416165 - | metal dependent phosphohydrolase Shewana3_2022 2418244 - 2417021 - | phage integrase family protein Shewana3_2023 2418473 - 2418237 - | hypothetical protein TERM 2899 2418541 - 2418557 + H 73 -5.9 -4.41817 | AAATCATGTGTTTTT TGTTCTT GCA AGGAACA TTTTGGGTTGTTTTA Shewana3_2024 2418595 - 2418819 + | hypothetical protein Shewana3_2025 2419269 - 2420771 + | response regulator receiver protein TERM 2900 2422048 - 2422070 + G 79 -5.6 -4.96848 | AATCGTTAATGGATG CGAAATGGGT TAA ACGCATTTTG TTTTTGTGTGACCGC TERM 2901 2422449 - 2422434 - g 70 -3.2 -4.83615 | opp_overlap 2422434 2422446, overlap 2422446 TATCCGTTAGAAAAA GCCATT GGAG AAGGGC ATTTAGTGCCCTTTG TERM 2902 2423173 - 2423146 - g 76 -4.8 -5.0133 | overlap 2423148 CACTCGCGCAAAAAA GGTTCGAGTTAC GGTT GCAACTCGCATC CGCGGCATTAAAAAA Shewana3_2026 2420829 - 2424245 + | type III restriction enzyme, res subunit TERM 2903 2424432 - 2424417 - g 82 -7.5 -4.72986 | opp_overlap 2424430 CAGCGTGACGAAAAA CGCGC CAAACT GCGCG GCATTGATTTTAAAC TERM 2904 2425299 - 2425283 - g 90 -10.1 -4.57073 | opp_overlap 2425283 2425284, overlap 2425284 GAGGCTGCTGAAAAA CGGCGGT AAA ACCGCCA TTATCGTGCCAGATG TERM 2905 2425284 - 2425298 + G 70 -11.4 -2.64218 | opp_overlap 2425283 2425284, overlap 2425283 AGGCTGCTGAAAAAC GGCGGT AAA ACCGCC ATTATCGTGCCAGAT TERM 2906 2425298 - 2425284 - g 76 -11.4 -3.33922 | opp_overlap 2425284 2425283, overlap 2425283 AGGCTGCTGAAAAAC GGCGGT AAA ACCGCC ATTATCGTGCCAGAT Shewana3_2027 2424267 - 2425808 + | N-6 DNA methylase TERM 2907 2425988 - 2425971 - g 91 -7.1 -5.17786 | CAACAAAACTAAAAA TTAAACC TGAA GGTTTAA CTAAAACTCGTATGG TERM 2908 2425996 - 2426016 + G 76 -3.2 -5.14563 | AGGTTTAACTAAAAC TCGTATGG TTTAT CCAGGCGA TTTTTTGCTGACAAA TERM 2909 2426255 - 2426232 - g 71 -6.8 -4.23892 | gap 1 CTGAATTAGTTAAAA GTG-TGGAAGT CCC ACTCCCACCAC TAGCCGAGCAAAAAC TERM 2910 2426418 - 2426435 + G 73 -9.1 -3.76176 | opp_overlap 2426417 2426418 2426419, overlap 2426419 TTCAGAAGTCAAAAT TGTCGGC TCTT GCCGACG TTATTACTGGATTTG Shewana3_2028 2425817 - 2426992 + | restriction modification system DNA specificity subunit Shewana3_2029 2427014 - 2428147 + | hypothetical protein TERM 2911 2428695 - 2428684 - g 73 -5.8 -4.56702 | opp_overlap 2428684 2428687 GTTGAAGCAAATAAA TGGC AAAA GCCA TTTTGTTGTTATCGA TERM 2912 2428684 - 2428695 + G 81 -5.8 -4.95547 | opp_overlap 2428684, overlap 2428687 GTTGAAGCAAATAAA TGGC AAAA GCCA TTTTGTTGTTATCGA TERM 2913 2428985 - 2428962 - g 95 -5.4 -5.59357 | ACTACACTAAAAAAA TACTGGTTAA AGCA TTAACGAGTA CATCGCCAAAAAAGG Shewana3_2030 2428148 - 2429917 + | hypothetical protein TERM 2914 2430217 - 2430193 - g 76 -7.1 -4.55689 | opp_overlap 2430193 ATGATTTATATAAAA GCATCATCCAG CAG CTTGATGCTGC TTCAGCAGAAATCAC TERM 2915 2430356 - 2430344 - g 83 -3.4 -5.40474 | ATTTTTGGAAAAAAA TTCC GAGTG GGAA AAATTTACCTTGGCA TERM 2916 2430630 - 2430604 - g 85 -3.9 -5.44721 | gap 1 ACGACCTGAAAAAAA TGTTACAGCAAT CGAA ATTGCTA-AACA TTGTTGCAGGCGTTC Shewana3_2031 2430156 - 2430695 + | hypothetical protein Shewana3_2032 2430700 - 2432328 + | hypothetical protein TERM 2917 2432675 - 2432660 - g 74 -4 -4.93365 | overlap 2432665 GGCGATAAGCAAAAA GAAGAT GAAA ACCTTC AGATTATGTACGAGG Shewana3_2033 2432306 - 2434015 + | GTP-binding protein, HSR1-related TERM 2918 2434039 - 2434072 + F 75 -6 -4.58685 | opp_overlap 2434039, overlap 2434057 TTATAATATTGAAAT TTATCGCCTTACAG CTGATA CTGCGGGGCGGTAA TTTTTCAACGAGTTT TERM 2919 2434495 - 2434513 + G 74 -7.4 -4.15044 | opp_overlap 2434496, overlap 2434496 TGAGTTGATGCAAAA ATCTGCCT TAC AGGCAGAC TTTCTTGCGAAAGAG TERM 2920 2434512 - 2434496 - g 100 -10.9 -4.66609 | opp_overlap 2434496 2434495 GAGTTGATGCAAAAA TCTGCCT TAC AGGCAGA CTTTCTTGCGAAAGA TERM 2921 2434496 - 2434512 + G 71 -10.9 -3.08812 | opp_overlap 2434496, overlap 2434495 GAGTTGATGCAAAAA TCTGCCT TAC AGGCAGA CTTTCTTGCGAAAGA Shewana3_2034 2434352 - 2434672 + | hypothetical protein TERM 2922 2435115 - 2435088 - f 71 -10 -2.71011 | ATGCCTCGTGAATTA TCTCCTGTGAAA AACA TTTCATAGGAGA TTCAAAATGGGTTAC Shewana3_2035 2435122 - 2436213 + | metallo-beta-lactamase superfamily hydrolase Shewana3_2036 2436216 - 2436866 + | hypothetical protein Shewana3_2037 2437310 - 2440852 + | hypothetical protein TERM 2923 2442281 - 2442306 + G 70 -10.5 -3.02461 | gap 1, overlap 2442283 GCTCACATATTTCAT CGCGCCCA-AAG AGG CTTATGGGCGTG TGTTAACCCCAATTG TERM 2924 2443854 - 2443840 - g 77 -10 -3.68529 | opp_overlap 2443839 AGGCTACCACCTAAA GCTGAG TAA CTCAGC ATCCTTTGAATTGAT TERM 2925 2445397 - 2445416 + G 76 -2.8 -5.14563 | gap 1, overlap 2445399 ATTAGGACGCTTTAA GGTCT-CCG ACG CGGCAGAGC TTTTTTACTACAACA Shewana3_2038 2440874 - 2447236 + | DEAD/DEAH box helicase domain-containing protein TERM 2926 2447504 - 2447472 - T 76 -7.8 -4.21787 | overlap 2447473 AAAAAATCGTCAAAA GCATTTTGTGCCAA CAGGT TTGGCACGAAATGG GCACAAATTTAGAAA TERM 2927 2447503 - 2447473 - T 84 -11.3 -3.11445 | overlap 2447472 AAAAATCGTCAAAAG CATTTTGTGCCAA CAGGT TTGGCACGAAATG GGCACAAATTTAGAA TERM 2928 2448123 - 2448157 + T 100 -15.9 -3.74158 | opp_overlap 2448125 2448130, overlap 2448125 2448130 AATGACCCCGCGCGA AATAAAACGGCGAGC CAAAT GCTCGCCGTTTTATC TTTCAATCTGCTTAA TERM 2929 2448125 - 2448155 + T 100 -18.5 -3.44888 | opp_overlap 2448125 2448130, overlap 2448123 2448130 TGACCCCGCGCGAAA TAAAACGGCGAGC CAAAT GCTCGCCGTTTTA TCTTTCAATCTGCTT TERM 2930 2448155 - 2448125 - T 100 -18.5 -3.53444 | opp_overlap 2448125 2448123 2448130, overlap 2448130 TGACCCCGCGCGAAA TAAAACGGCGAGC CAAAT GCTCGCCGTTTTA TCTTTCAATCTGCTT TERM 2931 2448150 - 2448130 - T 100 -14 -4.86731 | opp_overlap 2448130 2448125 2448123, overlap 2448125 CCGCGCGAAATAAAA CGGCGAGC CAAAT GCTCGCCG TTTTATCTTTCAATC TERM 2932 2448130 - 2448150 + T 100 -14 -4.80455 | opp_overlap 2448125 2448130, overlap 2448125 2448123 CCGCGCGAAATAAAA CGGCGAGC CAAAT GCTCGCCG TTTTATCTTTCAATC Shewana3_2039 2449548 - 2448169 - | MATE efflux family protein TERM 2933 2448257 - 2448247 - G 70 -4.6 -4.73388 | overlap 2448249 2448250 AAGGCGGATGAAAAA CAGC AGC GCCG CTGAGGTGAGGCCGG TERM 2934 2448308 - 2448293 - G 90 -9 -4.63184 | AATCCAGTCCAAAAA CCATGG GCGC CCATGG CGGGTACGATAAAGT Shewana3_2040 2449582 - 2450202 + | riboflavin synthase subunit alpha Shewana3_2041 2450412 - 2450212 - | hypothetical protein TERM 2935 2451934 - 2451909 - g 70 -8.3 -3.68836 | overlap 2451907 ACTCTGAAAACAAGA TGCTGCAACGT ATTT ACGGTACAGCA TGGGCGGATAAAAAA Shewana3_2043 2451269 - 2453197 + | threonyl-tRNA synthetase TERM 2936 2453233 - 2453217 - f 70 -3.6 -4.81163 | overlap 2453222 TAAAGATCAAGAAAA CAGCAG GGCGT CAGCTG GCCCCTAATAGAATC Shewana3_2044 2453312 - 2453743 + | translation initiation factor 3 TERM 2937 2453787 - 2453762 - f 100 -9.8 -4.4715 | gap 1, opp_overlap 2453762 2453761, overlap 2453763 2453765 GGGCAACCTATAAAA GTAGCGAAGGC TATAT GCCTTCGCT-C GCCTTGCTTTTTATT TERM 2938 2453787 - 2453763 - f 76 -10 -3.27808 | opp_overlap 2453762 2453761, overlap 2453762 2453765 GGCAACCTATAAAAG TAGCGAAGGC TATAT GCCTTCGCTC GCCTTGCTTTTTATT TERM 2939 2453785 - 2453765 - f 93 -12.6 -3.19859 | opp_overlap 2453762 2453761, overlap 2453762 2453763 CAACCTATAAAAGTA GCGAAGGC TATAT GCCTTCGC TCGCCTTGCTTTTTA rpmI 2453829 - 2454023 + | 50S ribosomal protein L35 rplT 2454040 - 2454396 + | 50S ribosomal protein L20 TERM 2940 2454412 - 2454385 - T 73 -5.6 -4.47007 | opp_overlap 2454393 GAAAAAGCAAAAGAA GCGTTAAACTAA GCAA TTAGTTTGCCGC ACTTAAGAGGGGACC TERM 2941 2454422 - 2454437 + T 100 -10.4 -5.85737 | opp_overlap 2454421 TGCCGCACTTAAGAG GGGACC ATTC GGTCCC TTTTTTTGTTGCTGT TERM 2942 2454514 - 2454533 + T 100 -12.2 -4.35646 | opp_overlap 2454514 ATACAGATAAAAAAA TAGCAGGC TGAT GCCTGCTA TTTCTATTTGAATCT TERM 2943 2454533 - 2454514 - T 100 -12.2 -5.77988 | opp_overlap 2454514 ATACAGATAAAAAAA TAGCAGGC TGAT GCCTGCTA TTTCTATTTGAATCT Shewana3_2047 2455543 - 2454590 - | thioredoxin reductase TERM 2944 2455752 - 2455729 - R 100 -12.5 -5.32882 | GATCAGCATAAAAAA TCGGCCTCA ACAGAG TGAGGCCGA ACAAAGCAGAGTAGG Shewana3_2048 2456909 - 2455794 - | L-alanine dehydrogenase TERM 2945 2456863 - 2456877 + g 76 -4.2 -5.05577 | opp_overlap 2456858, overlap 2456864 GAAGGAACCATACCG ACACGA TAC TCGTGG TTTTTAATTTCCTTT TERM 2946 2456949 - 2456935 - H 77 -6.4 -4.58283 | CAATTGCCTGAAAAA CCCACT TTT AATGGG CATAATTGTTATTTT TERM 2947 2457219 - 2457199 - g 71 -7.6 -4.11484 | opp_overlap 2457198 TGGAACTGTCTAAAA GAGTAGGA TTAAG TCCCACTC CGTGTTTAGAAAGAG Shewana3_2049 2457090 - 2457596 + | leucine-responsive transcriptional regulator TERM 2948 2457615 - 2457634 + F 100 -12.2 -4.25056 | opp_overlap 2457615 2457618 CCTGAACGTTTACAA TAAGGGGC CTCG GCCCCTTA TTTATTCCTACGATC TERM 2949 2457634 - 2457615 - f 89 -12.2 -3.33261 | opp_overlap 2457615, overlap 2457618 CCTGAACGTTTACAA TAAGGGGC CTCG GCCCCTTA TTTATTCCTACGATC TERM 2950 2457631 - 2457618 - f 81 -9.5 -3.8062 | opp_overlap 2457615, overlap 2457615 GAACGTTTACAATAA GGGGC CTCG GCCCC TTATTTATTCCTACG TERM 2951 2457678 - 2457709 + F 100 -8.8 -5.07941 | CAAAAATGACCTTGC TTAGCCCTTAGGTT TGCC AGCTTAAGGGCGAA TTTTTATCTGGTTTT Shewana3_2050 2457918 - 2460671 + | DNA translocase FtsK TERM 2952 2460690 - 2460720 + F 93 -9.8 -4.25104 | overlap 2460691 TAAGCTAGATGTCAG TTTGAACTCGCC ATAATGC GGCGAGTTCAAC TTTTAGTCCAAAGGA TERM 2953 2460691 - 2460719 + F 100 -13.3 -3.14848 | overlap 2460690 AAGCTAGATGTCAGT TTGAACTCGCC ATAATGC GGCGAGTTCAA CTTTTAGTCCAAAGG Shewana3_2051 2460741 - 2461361 + | outer membrane lipoprotein carrier protein LolA Shewana3_2052 2461370 - 2462701 + | recombination factor protein RarA Shewana3_2053 2462694 - 2463068 + | camphor resistance protein CrcB Shewana3_2054 2463087 - 2464373 + | seryl-tRNA synthetase Shewana3_2055 2464392 - 2464514 + | hypothetical protein TERM 2954 2464554 - 2464532 - T 100 -13.6 -5.30616 | opp_overlap 2464532 CGACTCAAATAAAAA GGTATATTCC AGT GGAATATACC TTTTTTGTTAGCAGA TERM 2955 2464532 - 2464554 + T 100 -13.6 -5.4505 | opp_overlap 2464532 CGACTCAAATAAAAA GGTATATTCC AGT GGAATATACC TTTTTTGTTAGCAGA Shewana3_2056 2464920 - 2464582 - | formate dehydrogenase TERM 2956 2464797 - 2464769 - G 76 -5.9 -4.6635 | opp_overlap 2464769, overlap 2464770 AAATCCCGAACAAAA TTGACCACTTCCC AGT GGGCACTGGTCAG TTCAATCTGTTCTTC Shewana3_2057 2465195 - 2464914 - | DsrH family protein TERM 2957 2465058 - 2465047 - G 74 -7.2 -4.15833 | ACCATCACCTTAAAA GGCG ATAG CGCC ATGGCCCATTGGCGC Shewana3_2058 2465551 - 2465195 - | DsrE family protein Shewana3_2059 2465958 - 2465566 - | DsrE family protein TERM 2958 2465650 - 2465636 - G 85 -7.2 -4.79352 | CCACCCATAATAAAA GAATGT TCC ACATTC CAGTGGCTTAACCCG TERM 2959 2465986 - 2465967 - R 100 -12.2 -5.9873 | opp_overlap 2465967 TCATCATAAAAAAAA TGGCCCTA AAAG TAGGGCCA TTTTAGCGTAAGTTT TERM 2960 2465967 - 2465986 + r 100 -12.2 -4.15854 | opp_overlap 2465967 TCATCATAAAAAAAA TGGCCCTA AAAG TAGGGCCA TTTTAGCGTAAGTTT Shewana3_2060 2466674 - 2466015 - | hypothetical protein Shewana3_2061 2467845 - 2466934 - | putative DNA-binding transcriptional regulator Shewana3_2062 2467952 - 2469223 + | inner membrane transport protein YdhC TERM 2961 2469402 - 2469433 + T 100 -13.2 -4.70879 | opp_overlap 2469409, overlap 2469409 CTCCGCCATATTCTA CGGAAAAGCCATCA GCAA TGATGGCTTTTTTG TTTTTGGAATTTCGA TERM 2962 2469426 - 2469409 - T 88 -9.9 -4.19258 | opp_overlap 2469402 2469409 ATATTCTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGGA TERM 2963 2469409 - 2469426 + T 100 -9.9 -5.93252 | opp_overlap 2469409, overlap 2469402 ATATTCTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGGA TERM 2964 2469695 - 2469716 + T 100 -14.5 -5.27938 | opp_overlap 2469695 GTATTCAAATAAAAA GGCCGCTAA AGAC TTAGCGGCC TTTTTATTTCGCACT TERM 2965 2469716 - 2469695 - T 100 -14.5 -5.30616 | opp_overlap 2469695 GTATTCAAATAAAAA GGCCGCTAA AGAC TTAGCGGCC TTTTTATTTCGCACT Shewana3_2063 2470328 - 2469798 - | hypothetical protein TERM 2966 2470146 - 2470135 - G 71 -5.8 -4.42667 | overlap 2470126 TTAAAATCAGTAAAA CCGA GCTC TCGG GCCAAGACGGCTTGG Shewana3_2064 2470698 - 2472371 + | ribulokinase araD 2472373 - 2473068 + | L-ribulose-5-phosphate 4-epimerase TERM 2967 2473282 - 2473272 - g 71 -6.8 -4.20354 | overlap 2473264 AAGCCAACCGTAAAA TCCC CAC GGGA AATTCACGCCGTATG Shewana3_2066 2473107 - 2474609 + | L-arabinose isomerase TERM 2968 2474624 - 2474648 + F 100 -9.4 -4.83169 | gap 1, opp_overlap 2474628, overlap 2474628 ATTCTCGCGCAGCAA T-AAAGCCGCC TTCG GGCGGCTTTCA TTTTTCTGGCACCAT TERM 2969 2474643 - 2474628 - f 100 -11.8 -4.24342 | opp_overlap 2474624 2474628 TCGCGCAGCAATAAA GCCGCC TTCG GGCGGC TTTCATTTTTCTGGC TERM 2970 2474628 - 2474643 + F 100 -11.8 -4.38116 | opp_overlap 2474628, overlap 2474624 TCGCGCAGCAATAAA GCCGCC TTCG GGCGGC TTTCATTTTTCTGGC Shewana3_2067 2474686 - 2475294 + | HAD family hydrolase Shewana3_2068 2475530 - 2476246 + | GntR family transcriptional regulator TERM 2971 2476324 - 2476307 - T 100 -9.9 -5.5112 | opp_overlap 2476307 TCGATCAATAAAAAA GGTGAAC TTAG GTTCACC TTTTTTGTTTTACTG TERM 2972 2476307 - 2476324 + T 100 -9.9 -5.83211 | opp_overlap 2476307 TCGATCAATAAAAAA GGTGAAC TTAG GTTCACC TTTTTTGTTTTACTG Shewana3_2069 2477303 - 2476356 - | glycoside hydrolase family protein TERM 2973 2476933 - 2476951 + g 70 -3 -4.90002 | opp_overlap 2476928 2476925, overlap 2476937 TCAGCAACAGCGACA CCTATGGC AAA GCCATTGA TTTTGTTGTGTCTTG TERM 2974 2477329 - 2477349 + H 74 -9.9 -3.11922 | overlap 2477327 2477326 TTGTTTTTTGATATT TTGGTATTA TAG TAATACCAA TACTTTTACGTGCTA TERM 2975 2478692 - 2478712 + G 79 -11.1 -3.57561 | opp_overlap 2478692 2478694 GCACACCTGATGCAA CACCGCGGT AAA GCCGTGGTG TTTGAAAGCTTCGAC Shewana3_2070 2477453 - 2479213 + | dihydroxy-acid dehydratase Shewana3_2071 2479274 - 2480044 + | short-chain dehydrogenase/reductase SDR Shewana3_2072 2480124 - 2481179 + | aldose 1-epimerase Shewana3_2073 2481278 - 2482219 + | periplasmic binding protein/LacI transcriptional regulator Shewana3_2074 2482251 - 2483750 + | ABC transporter related TERM 2976 2483913 - 2483894 - g 100 -5.6 -5.7946 | overlap 2483895 GGTTCAAGAAAAAAA CGCCCGTT ACCA AGCGGGCA AGTCGACCTCCATGG TERM 2977 2484385 - 2484398 + G 70 -4.5 -4.59773 | overlap 2484386 CAGGCTTTGCCGCCA TTGGC GTGG GCCAG TTTTTAGGCCTGCCG Shewana3_2075 2483751 - 2484968 + | inner-membrane translocator Shewana3_2076 2484965 - 2485927 + | inner membrane ABC transporter permease protein YjfF Shewana3_2077 2485902 - 2487035 + | glycoside hydrolase family protein Shewana3_2078 2487102 - 2488103 + | glycoside hydrolase family protein TERM 2978 2488135 - 2488159 + F 100 -13.6 -5.24531 | gap 1, opp_overlap 2488130 2488132, overlap 2488130 AATGATGTAATACCC GCGGGGCATGC TTCA GCA-GCCCCGC TTTTTTATGCCCGAT Shewana3_2079 2488411 - 2489001 + | hypothetical protein TERM 2979 2489227 - 2489201 - T 100 -12.4 -5.63504 | opp_overlap 2489204 2489204 AAGGGGATAAAAAAA CAAGGGAAAGCG TTT CACTTTCCCTTA TCTGAATCAGTGTTT TERM 2980 2489204 - 2489224 + T 78 -9.7 -3.524 | opp_overlap 2489201, overlap 2489204 GGGATAAAAAAACAA GGGAAAGCG TTT CACTTTCCC TTATCTGAATCAGTG Shewana3_2080 2491666 - 2489279 - | acetyl-CoA carboxylase, biotin carboxylase TERM 2981 2491735 - 2491750 + r 80 -10.4 -3.54771 | opp_overlap 2491735 TTGCGTGATAAAAAA GCCCCT GGGT AGGGGC TTATGGTGTTATCGC TERM 2982 2491750 - 2491735 - R 100 -10.4 -5.24129 | opp_overlap 2491735 TTGCGTGATAAAAAA GCCCCT GGGT AGGGGC TTATGGTGTTATCGC Shewana3_2081 2493218 - 2491773 - | sugar (glycoside-Pentoside-hexuronide) transporter TERM 2983 2491889 - 2491901 + g 71 -6.9 -4.22748 | TAACATGCGCCTGCT CGGGC AAA GCCTG TTTGATTTCTTCATA TERM 2984 2493698 - 2493688 - g 74 -8.2 -4.08767 | CCTAGCTGGGCAAAA GGCG TTG CGCC AGAGTTTAACGGCCA Shewana3_2082 2493427 - 2494497 + | arabinan endo-1,5-alpha-L-arabinosidase Shewana3_2083 2494497 - 2496401 + | glycoside hydrolase family protein TERM 2985 2496519 - 2496548 + T 100 -13.7 -5.45652 | opp_overlap 2496521, overlap 2496506 GTTTGCTCGGCACCA GAGCAGTAGTTGT GCTT GCAACTGCTGCTC TTTTTTATTCAGGCT Shewana3_2084 2497336 - 2496581 - | permease TERM 2986 2497488 - 2497470 - R 100 -11.8 -5.4588 | opp_overlap 2497470 TAAAAGCATAAAAAA GCTAATCC ACA GGATTAGC TTTTTCGGTTTAAAC TERM 2987 2497470 - 2497488 + r 100 -11.8 -4.81249 | opp_overlap 2497470 TAAAAGCATAAAAAA GCTAATCC ACA GGATTAGC TTTTTCGGTTTAAAC Shewana3_2085 2500353 - 2497516 - | TonB-dependent receptor TERM 2988 2498486 - 2498510 + g 77 -10.7 -3.5764 | opp_overlap 2498505 AAATCCATATCTGCA TCGGCTTTCTC ATA GCGAAGGCCGA TTTGACCATCAACTT Shewana3_2086 2500940 - 2504305 + | beta-xylosidase-like protein TERM 2989 2504331 - 2504346 + F 100 -10.4 -5.72254 | opp_overlap 2504331 CTGTCTATACTGAAA GCACCC ATTC GGGTGC TTTTTTATTGTTTGC TERM 2990 2504346 - 2504331 - f 82 -10.4 -3.70902 | opp_overlap 2504331 CTGTCTATACTGAAA GCACCC ATTC GGGTGC TTTTTTATTGTTTGC TERM 2991 2504942 - 2504954 + G 70 -9.1 -3.49771 | overlap 2504940 AACTTTATCCGCACT GTGCC GAT GGCAC TGTTATTAATGTTAT Shewana3_2087 2504405 - 2505256 + | LysR family transcriptional regulator Shewana3_2088 2505356 - 2506258 + | hypothetical protein TERM 2992 2506743 - 2506726 - f 81 -11.3 -2.75064 | opp_overlap 2506725 2506724, overlap 2506723 TTCTCTACTCAAGCA TGCAGCG TATT CGCTGCA ACTTGTGAGCACATA Shewana3_2089 2506781 - 2509798 + | formate dehydrogenase alpha subunit TERM 2993 2510296 - 2510266 - g 91 -10.4 -4.52143 | opp_overlap 2510294 GCCAAAGATAACAAA GCCTATAAGTGCAC CCT GTGCTCCGATAGGC TCGCCGTTGGCCTCG Shewana3_2090 2509801 - 2510703 + | formate dehydrogenase beta subunit TERM 2994 2510791 - 2510801 + G 91 -4.6 -5.64274 | TAGTGACCTTTCTAA CGGG GTT CTCG TTTTTTTATCCCTCG TERM 2995 2511050 - 2511063 + G 70 -2.3 -4.91511 | TCAGAAAATGTTATT CCGCG CCTT TGTGG TTTTTGTAATGGCGT Shewana3_2091 2510700 - 2511323 + | formate dehydrogenase gamma subunit TERM 2996 2511398 - 2511386 - g 73 -9.1 -3.68351 | CCCTTAGCATTGAAA CCGCT AAA AGCGG CAGATCCTGAGAAAA Shewana3_2092 2511326 - 2512225 + | formate dehydrogenase accessory protein FdhE TERM 2997 2512554 - 2512542 - T 72 -6.3 -4.29738 | TTAGACGCATGAAAA TTCTC ACC GAGAA TCAGAATGAGCCTTC TERM 2998 2512817 - 2512832 + T 74 -4 -5.06816 | gap 1, opp_overlap 2512817 CCGTAAAAAAACAAC TGTCTGG ACA CC-GACA TTTTTATTACAAAAT TERM 2999 2512936 - 2512958 + T 79 -8.6 -4.22475 | opp_overlap 2512935 ATTCATAAATGTAAG GTTAGTATCA GAT TGATATTAAC TTATTGTTTTAAATG Shewana3_2093 2513866 - 2513627 - | transposase Shewana3_2094 2514882 - 2513971 - | hypothetical protein TERM 3000 2514029 - 2514043 + g 80 -2.8 -5.36441 | overlap 2514031 AGCTGGTTAGCTTGA GGTGAA GAT TTCAGC TTTTTTGTGTCAAGG Shewana3_2095 2515287 - 2516345 + | hypothetical protein Shewana3_2096 2516338 - 2517120 + | thioredoxin-disulfide reductase mukB 2517113 - 2521666 + | cell division protein MukB TERM 3001 2522475 - 2522454 - g 80 -2.2 -5.37593 | gap 1, overlap 2522458 TGGTAAAGGAAAAAA GGTATGGGG GGAAG CCCC-TGCC TGCCCTGAAATCGCA Shewana3_2098 2521663 - 2522613 + | hypothetical protein Shewana3_2099 2522804 - 2524114 + | hypothetical protein Shewana3_2100 2524574 - 2524374 - | transposase IS3/IS911 Shewana3_2101 2524671 - 2524961 + | putative metal dependent phosphohydrolase Shewana3_2102 2525195 - 2525536 + | hypothetical protein Shewana3_2103 2525702 - 2526448 + | restriction endonuclease TERM 3002 2526465 - 2526508 + T 81 -9.3 -3.75332 | gap 3, opp_overlap 2526451 2526474 2526477, overlap 2526474 TTCGCCTAACAAGGC GCTCAAGAATGACAAAAAACGC TTG GCGTTTTTTG-CA-TCTT-AGC TTTGCGTTAACCCAT TERM 3003 2526474 - 2526501 + T 79 -10.8 -3.21465 | gap 1, opp_overlap 2526474 2526477, overlap 2526465 CAAGGCGCTCAAGAA TGACAAAAAACGC TTG GCGTTTTTTG-CA TCTTAGCTTTGCGTT TERM 3004 2526501 - 2526474 - T 84 -10.8 -3.62522 | gap 1, opp_overlap 2526465 2526474, overlap 2526477 CAAGGCGCTCAAGAA TGACAAAAAACGC TTG GCGTTTTTTG-CA TCTTAGCTTTGCGTT TERM 3005 2526499 - 2526477 - T 100 -13.6 -2.93073 | opp_overlap 2526474 2526465, overlap 2526474 GGCGCTCAAGAATGA CAAAAAACGC TTG GCGTTTTTTG CATCTTAGCTTTGCG Shewana3_2104 2528736 - 2527441 - | phage integrase family protein TERM 3006 2528631 - 2528621 - G 70 -8.2 -3.78775 | TGTTCCATCACTAAA CCCG CAT CGGG CACATCAGATAAGCT TERM 3007 2528810 - 2528787 - H 84 -9.7 -3.86311 | ATACTTAAACGCAAA TGCCGATAA CGTTAT TTATCGGCA TTAACCAAAAACTCA Shewana3_2105 2529187 - 2530764 + | response regulator receiver modulated metal dependent phosphohydrolase Shewana3_2106 2531358 - 2530873 - | hypothetical protein TERM 3008 2532492 - 2532513 + G 71 -5.9 -4.30833 | gap 1, opp_overlap 2532491 2532492, overlap 2532493 2532495 GTGCATGGCACAAAC TGC-GTACTG ACC CAGTACTGCG TTTCTTAGTGGTTTC Shewana3_2107 2531582 - 2533018 + | cytochrome c oxidase, cbb3-type, subunit I Shewana3_2108 2533031 - 2533657 + | cytochrome c oxidase, cbb3-type, subunit II Shewana3_2109 2533669 - 2533845 + | Cbb3-type cytochrome oxidase component Shewana3_2110 2533845 - 2534813 + | cytochrome c oxidase, cbb3-type, subunit III TERM 3009 2534834 - 2534854 + F 100 -13.3 -5.78622 | opp_overlap 2534829 TATGAGTAACGCTAA GGCCTCGAT AAC GTCGAGGCC TTTTTTTTAAAGTGC TERM 3010 2535127 - 2535107 - g 70 -8.3 -3.67976 | overlap 2535109 TTGAGTAAGGTCAAA TATGCCAAG CAG CTTGGCATG CAATGGCAACTCGAA TERM 3011 2535125 - 2535109 - g 75 -10.9 -3.41936 | overlap 2535107 GAGTAAGGTCAAATA TGCCAAG CAG CTTGGCA TGCAATGGCAACTCG Shewana3_2111 2534924 - 2535403 + | hypothetical protein Shewana3_2112 2535414 - 2537825 + | heavy metal translocating P-type ATPase Shewana3_2113 2537845 - 2538045 + | cytochrome oxidase maturation protein, cbb3-type Shewana3_2114 2538054 - 2538746 + | hypothetical protein TERM 3012 2539315 - 2539296 - g 76 -3.4 -5.1356 | opp_overlap 2539295, overlap 2539297 GCTGAGCAAGAAAAA TGCCGAGG AACG CCTCGCCG CATTTATCAGCAATC Shewana3_2115 2538802 - 2539554 + | fumarate/nitrate reduction transcriptional regulator TERM 3013 2539684 - 2539648 - f 82 -10.2 -3.72756 | overlap 2539656 GAACAATACAGATAA TTGCCAAAGGCTCATG ATGAA CATGAGCCTATGACTA AAGGAACATGTTATG TERM 3014 2539676 - 2539656 - f 84 -11.2 -3.63305 | overlap 2539648 CAGATAATTGCCAAA GGCTCATG ATGAA CATGAGCC TATGACTAAAGGAAC TERM 3015 2539726 - 2539716 - g 78 -4 -5.19212 | AGGATTATCAAAAAA TACT GGT AGTA GTCGACCCCACGACA Shewana3_2116 2539697 - 2540629 + | universal stress protein UspE TERM 3016 2540700 - 2540672 - f 71 -8.7 -3.40052 | opp_overlap 2540673, overlap 2540670 2540673 ATAGCTGGAATAATA CGCGCCCTGAAAC TGA GTTACTGGGCGCT TTTTTTATGTTGGAA TERM 3017 2540699 - 2540673 - f 83 -12.2 -2.63549 | opp_overlap 2540673, overlap 2540672 2540670 TAGCTGGAATAATAC GCGCCCTGAAAC TGA GTTACTGGGCGC TTTTTTTATGTTGGA TERM 3018 2540673 - 2540699 + F 100 -12.2 -5.80817 | opp_overlap 2540673 2540672 2540670 TAGCTGGAATAATAC GCGCCCTGAAAC TGA GTTACTGGGCGC TTTTTTTATGTTGGA Shewana3_2117 2540707 - 2541675 + | PP-loop domain-containing protein TERM 3019 2541689 - 2541718 + T 86 -12.3 -2.56571 | opp_overlap 2541696, overlap 2541696 AAACGCGATACGCAT AAAAAAAGCCCAC GAGA GTGGGCTTTTTTA TAGCTTAAATCTATC TERM 3020 2541696 - 2541711 + T 100 -10.4 -5.31456 | opp_overlap 2541696, overlap 2541689 ATACGCATAAAAAAA GCCCAC GAGA GTGGGC TTTTTTATAGCTTAA TERM 3021 2541711 - 2541696 - T 100 -10.4 -5.65177 | opp_overlap 2541696 2541689 ATACGCATAAAAAAA GCCCAC GAGA GTGGGC TTTTTTATAGCTTAA Shewana3_2118 2542358 - 2541735 - | hypothetical protein Shewana3_2119 2543163 - 2542351 - | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase TERM 3022 2544118 - 2544132 + G 76 -5.6 -4.88736 | AAGCCTTAGCGATGA CCACTG CGC CCGTGG TTTTTATCGATAATC Shewana3_2120 2543481 - 2544404 + | hypothetical protein TERM 3023 2544498 - 2544469 - T 100 -14.5 -3.68378 | opp_overlap 2544475, overlap 2544475 GGACAGCTCAAAATA CAAAAAGGACAGC CTAG GCTGTCCTTTTTA GTGAGCCCTCTTCTG TERM 3024 2544492 - 2544475 - T 100 -11.3 -5.28983 | opp_overlap 2544475, overlap 2544469 CTCAAAATACAAAAA GGACAGC CTAG GCTGTCC TTTTTAGTGAGCCCT TERM 3025 2544475 - 2544492 + T 100 -11.3 -4.7254 | opp_overlap 2544469 2544475 CTCAAAATACAAAAA GGACAGC CTAG GCTGTCC TTTTTAGTGAGCCCT Shewana3_2121 2545762 - 2544569 - | aromatic amino acid aminotransferase TERM 3026 2546043 - 2546024 - R 100 -12.2 -5.4505 | opp_overlap 2546024 TGCGGCAATAAAAAA GGCCTAAC ATCT GTTAGGCC TTCTCTATGTTATGG TERM 3027 2546024 - 2546043 + r 93 -12.2 -3.71149 | opp_overlap 2546024 TGCGGCAATAAAAAA GGCCTAAC ATCT GTTAGGCC TTCTCTATGTTATGG TERM 3028 2546097 - 2546117 + r 75 -10.5 -2.89742 | overlap 2546100 GCACGCTGTTACCAG CGAGGGATT TTA AATCCCTTG TGTCTACCGATTCCA TERM 3029 2546100 - 2546114 + r 73 -8.6 -3.5947 | overlap 2546097 CGCTGTTACCAGCGA GGGATT TTA AATCCC TTGTGTCTACCGATT TERM 3030 2546631 - 2546670 + r 93 -12.2 -3.58698 | opp_overlap 2546643, overlap 2546643 TTAGGACGGGTCAAT GTCATAAAAAAAGCGCCC TACT GGGCGCTTTTTCTTGGAC GTTTTTATGTGCGTA TERM 3031 2546643 - 2546658 + r 100 -11.8 -5.08088 | opp_overlap 2546643, overlap 2546631 AATGTCATAAAAAAA GCGCCC TACT GGGCGC TTTTTCTTGGACGTT TERM 3032 2546658 - 2546643 - R 100 -11.8 -5.63504 | opp_overlap 2546643 2546631 AATGTCATAAAAAAA GCGCCC TACT GGGCGC TTTTTCTTGGACGTT Shewana3_2122 2548123 - 2546690 - | glyceraldehyde-3-phosphate dehydrogenase Shewana3_2123 2548330 - 2549217 + | hypothetical protein TERM 3033 2550081 - 2550064 - g 74 -6.9 -4.42238 | opp_overlap 2550064 TGATCCCAACTAAAA CTGGCGC TGCC GCGGCAG TAGGTTTAGTTGTAC Shewana3_2124 2549430 - 2550440 + | glyceraldehyde-3-phosphate dehydrogenase TERM 3034 2550478 - 2550461 - T 100 -14.1 -4.72272 | opp_overlap 2550461 CTTCTTTATCAAAAA GCCCCGC TCTT GCGGGGC TTTTTTTATACCGAT TERM 3035 2550461 - 2550478 + T 100 -14.1 -5.61596 | opp_overlap 2550461 CTTCTTTATCAAAAA GCCCCGC TCTT GCGGGGC TTTTTTTATACCGAT Shewana3_2125 2551078 - 2550566 - | superoxide dismutase, copper/zinc binding TERM 3036 2550769 - 2550786 + g 71 -11.3 -2.83403 | overlap 2550768 CTAAATGCCCTTCTC CCCATGG CGTG CCATGGG CTTTCGTGGCGGCAG TERM 3037 2550832 - 2550848 + g 71 -5.1 -4.56914 | CTGCCGCGCCAGCAG GGACG ATTTTTC CGTCC TTTTCCTTTGGATCA TERM 3038 2551190 - 2551222 + r 100 -16.5 -3.63744 | opp_overlap 2551195, overlap 2551195 ACACTTATTTCCACC TAAAACGCTCGATGA ACC TCATCGGGCGTTTTG TATTTTAAGGCCAAA TERM 3039 2551217 - 2551195 - R 100 -12 -4.18494 | opp_overlap 2551195 2551190 TATTTCCACCTAAAA CGCTCGATGA ACC TCATCGGGCG TTTTGTATTTTAAGG TERM 3040 2551195 - 2551217 + r 100 -14.2 -4.89567 | opp_overlap 2551195, overlap 2551190 TATTTCCACCTAAAA CGCTCGATGA ACC TCATCGGGCG TTTTGTATTTTAAGG Shewana3_2126 2551911 - 2551189 - | integrase catalytic subunit TERM 3041 2551675 - 2551641 - G 74 -11.5 -3.17797 | opp_overlap 2551637 2551646, overlap 2551643 GTGACAGATAGGTAA TATCAGCCACCCAGA CTTGT TCTGAGCGGCTGATG TCCACTTGCTGCTCA TERM 3042 2551673 - 2551643 - G 86 -14.1 -3.14839 | opp_overlap 2551637 2551646, overlap 2551641 GACAGATAGGTAATA TCAGCCACCCAGA CTTGT TCTGAGCGGCTGA TGTCCACTTGCTGCT TERM 3043 2552004 - 2552021 + r 87 -4.9 -5.4505 | gap 1, overlap 2552004 2552005 GACAGCATTGGGTGA C-GCCATA ACC TATGGCCG TTTTTTCTTGGAGCG Shewana3_2127 2552405 - 2552013 - | ISPsy11, transposase OrfA TERM 3044 2552621 - 2552650 + r 74 -4.9 -4.76644 | opp_overlap 2552626, overlap 2552626 AATTTGAACCGATAC AAAAATCCCCGCC AAGT GGCAGGGATTTCA TTTTTCGTGAGTGTT TERM 3045 2552626 - 2552645 + r 88 -9.2 -4.35327 | opp_overlap 2552626, overlap 2552621 GAACCGATACAAAAA TCCCCGCC AAGT GGCAGGGA TTTCATTTTTCGTGA TERM 3046 2552645 - 2552626 - R 100 -11.4 -5.00642 | opp_overlap 2552626 2552621 GAACCGATACAAAAA TCCCCGCC AAGT GGCAGGGA TTTCATTTTTCGTGA Shewana3_2128 2553751 - 2552678 - | quinolinate synthetase TERM 3047 2553838 - 2553855 + r 100 -8.4 -5.18357 | opp_overlap 2553838, overlap 2553830 CCTGCGAATAAAAAA GGACGC TAAATT GCGTCC TTTTTTGCTGGATTG TERM 3048 2553855 - 2553838 - R 100 -8.4 -5.4505 | opp_overlap 2553838 2553830 CCTGCGAATAAAAAA GGACGC TAAATT GCGTCC TTTTTTGCTGGATTG Shewana3_2129 2555491 - 2553896 - | dihydrolipoamide acetyltransferase Shewana3_2130 2556478 - 2555501 - | transketolase, central region TERM 3049 2555802 - 2555818 + g 73 -5 -4.72386 | GAAATCCCCTCTTTT GCCGCC ATGTC GGCCGC TTTTTCGATGATTTC Shewana3_2131 2557660 - 2556482 - | dehydrogenase, E1 component Shewana3_2132 2558857 - 2557823 - | succinylglutamate desuccinylase Shewana3_2133 2559135 - 2559614 + | peptide methionine sulfoxide reductase TERM 3050 2559698 - 2559672 - T 100 -13.1 -5.38054 | opp_overlap 2559672 CGCTACAAATAAAAA CGCACTCATAG GATTT CCATGAGTGCG TTTTTTATCGGAAAA TERM 3051 2559672 - 2559698 + T 100 -11.7 -5.24129 | gap 1, opp_overlap 2559672 CGCTACAAATAAAAA CGCACTCATAGG ATTT CC-ATGAGTGCG TTTTTTATCGGAAAA TERM 3052 2559736 - 2559748 + T 78 -10.5 -3.35679 | opp_overlap 2559726 TTAAATGCTAGTTCA GGCGC TAA GCGCC TTATCAATCAAGGCC Shewana3_2134 2561385 - 2559733 - | phosphoglucomutase TERM 3053 2560151 - 2560139 - G 74 -4.7 -4.81814 | AGTACCAGAATAAAA CCGTC TTT GTCGG TACACCAAGTCGTGC TERM 3054 2561444 - 2561427 - R 100 -12.7 -3.89336 | overlap 2561421 TTAATTAAATGGAAA CGCCGCA TCAT TGCGGCG TCGATAAAAGCGTTA TERM 3055 2561464 - 2561454 - R 74 -6.8 -4.36914 | opp_overlap 2561462 GCGGCGTCGATAAAA GCGT TAT ACGC GTTCGGCAATGCCGT Shewana3_2135 2562008 - 2561457 - | replication initiation regulator SeqA TERM 3056 2562158 - 2562145 - H 70 -3.8 -4.7629 | overlap 2562127 TCATTAATCTAAAAA TGCG TGAAAT CGCA CATCAAATTAGCACA Shewana3_2136 2562280 - 2563080 + | alpha/beta hydrolase fold TERM 3057 2563335 - 2563349 + G 79 -9.2 -4.15222 | TGGTTAGTGTTATTT CTCGGC TGC GCCGGG TTTATTGCAAAAGGT Shewana3_2137 2563182 - 2563403 + | hypothetical protein Shewana3_2138 2563415 - 2563687 + | LexA regulated protein TERM 3058 2563889 - 2563869 - g 74 -8.3 -4.04413 | overlap 2563883 AAGAGCACCAAAGAA CAGATCGCA GAA TACGACCTG CTGCTGTTCGGCATC Shewana3_2139 2563743 - 2564270 + | flavodoxin FldA TERM 3059 2564280 - 2564315 + F 100 -15.7 -2.85847 | opp_overlap 2564290, overlap 2564282 2564290 GACTAAGCTCAGTTC CGTAAAAAAAGCGGC CGAAAT GCCGCTTTTTTTATG TGTGCTCTCCCGATT TERM 3060 2564282 - 2564313 + F 100 -14.7 -2.97747 | opp_overlap 2564290, overlap 2564280 2564290 CTAAGCTCAGTTCCG TAAAAAAAGCGGC CGAAAT GCCGCTTTTTTTA TGTGTGCTCTCCCGA TERM 3061 2564290 - 2564305 + F 100 -7.5 -5.76633 | opp_overlap 2564290, overlap 2564282 2564280 AGTTCCGTAAAAAAA GCGGC CGAAAT GCCGC TTTTTTTATGTGTGC TERM 3062 2564305 - 2564290 - f 91 -7.5 -5.40474 | opp_overlap 2564290 2564282 2564280 AGTTCCGTAAAAAAA GCGGC CGAAAT GCCGC TTTTTTTATGTGTGC Shewana3_2140 2564299 - 2565531 + | hypothetical protein Shewana3_2141 2565576 - 2566136 + | elongation factor P TERM 3063 2566188 - 2566220 + T 100 -16.5 -3.63744 | opp_overlap 2566193, overlap 2566193 ACACTTATTTCCACC TAAAACGCTCGATGA ACC TCATCGGGCGTTTTG TATTTTAAGGCCAAA TERM 3064 2566193 - 2566215 + T 100 -14.2 -4.89567 | opp_overlap 2566193, overlap 2566188 TATTTCCACCTAAAA CGCTCGATGA ACC TCATCGGGCG TTTTGTATTTTAAGG TERM 3065 2566215 - 2566193 - T 100 -12 -4.18494 | opp_overlap 2566188 2566193 TATTTCCACCTAAAA CGCTCGATGA ACC TCATCGGGCG TTTTGTATTTTAAGG Shewana3_2142 2566909 - 2566187 - | integrase catalytic subunit TERM 3066 2566673 - 2566639 - G 74 -11.5 -3.17797 | opp_overlap 2566635 2566644, overlap 2566641 GTGACAGATAGGTAA TATCAGCCACCCAGA CTTGT TCTGAGCGGCTGATG TCCACTTGCTGCTCA TERM 3067 2566671 - 2566641 - G 86 -14.1 -3.14839 | opp_overlap 2566635 2566644, overlap 2566639 GACAGATAGGTAATA TCAGCCACCCAGA CTTGT TCTGAGCGGCTGA TGTCCACTTGCTGCT TERM 3068 2567002 - 2567019 + r 87 -4.9 -5.4505 | gap 1, overlap 2567002 2567003 GACAGCATTGGGTGA C-GCCATA ACC TATGGCCG TTTTTTCTTGGAGCG Shewana3_2143 2567403 - 2567011 - | response regulator receiver protein TERM 3069 2567489 - 2567472 - R 100 -11.3 -5.36441 | opp_overlap 2567472 CTCCCAGATAAAAAA GCCAGTG CCTG CACTGGC TTTTTTATTGCCTCG TERM 3070 2567472 - 2567489 + r 100 -11.3 -5.4833 | opp_overlap 2567472 CTCCCAGATAAAAAA GCCAGTG CCTG CACTGGC TTTTTTATTGCCTCG TERM 3071 2567626 - 2567656 + r 81 -9.3 -3.76224 | gap 1, opp_overlap 2567634, overlap 2567627 2567634 AATAAACGTTGGCAA TA-AAAAAACCAGC CGTA GCTGGTTTTTTATA TTTACTGCATCGCAG TERM 3072 2567627 - 2567654 + r 78 -10 -3.46647 | opp_overlap 2567634, overlap 2567626 2567634 ATAAACGTTGGCAAT AAAAAAACCAGC CGTA GCTGGTTTTTTA TATTTACTGCATCGC TERM 3073 2567634 - 2567647 + r 100 -8.1 -5.5762 | opp_overlap 2567634, overlap 2567627 2567626 TTGGCAATAAAAAAA CCAGC CGTA GCTGG TTTTTTATATTTACT TERM 3074 2567647 - 2567634 - R 100 -8.1 -5.7946 | opp_overlap 2567634 2567627 2567626 TTGGCAATAAAAAAA CCAGC CGTA GCTGG TTTTTTATATTTACT Shewana3_2144 2569055 - 2567673 - | Na+/H+ antiporter NhaC TERM 3075 2568883 - 2568868 - G 70 -9 -3.54779 | ACTAAAATCAACCAA CCGATG GTTT CATCGG CCATGACTTTTAATG TERM 3076 2569503 - 2569515 + H 71 -3.3 -4.98531 | opp_overlap 2569504, overlap 2569504 TTTTATTAACATTTA ACCGT TGA ACGGA TTTTTAGTTTCAAAA TERM 3077 2570236 - 2570222 - g 74 -10 -3.53444 | opp_overlap 2570233, overlap 2570233 TTAGCCGGCGGTAAA GCGGTA CAT TACCGC TGCGATGAAGAGGCG TERM 3078 2570787 - 2570776 - g 82 -7.2 -4.59773 | TGTGAGCGTGAAAAA GCCC AAGG GGGC ACTGTACGCCTTCCC Shewana3_2145 2569796 - 2571010 + | aminotransferase AlaT TERM 3079 2571055 - 2571079 + F 100 -13.7 -4.81551 | opp_overlap 2571059, overlap 2571059 TAGGTTAACCTCGAC TAAAGCGATCC TCT GGGTCGCTTTA TTTTTGCTGTGCGTA TERM 3080 2571059 - 2571075 + F 100 -10.1 -4.94262 | opp_overlap 2571059, overlap 2571055 TTAACCTCGACTAAA GCGATCC TCT GGGTCGC TTTATTTTTGCTGTG TERM 3081 2571075 - 2571059 - f 72 -7.9 -3.74747 | opp_overlap 2571055 2571059 TTAACCTCGACTAAA GCGATCC TCT GGGTCGC TTTATTTTTGCTGTG Shewana3_2146 2571265 - 2571852 + | hypothetical protein TERM 3082 2572024 - 2572011 - g 71 -6.7 -4.16943 | opp_overlap 2572021, overlap 2572016 GCCTACAGGCCAAAA CCCAA GTGC TTGGG GTAGGCATGAACGAT Shewana3_2147 2571878 - 2573218 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 3083 2573233 - 2573260 + T 100 -14.4 -3.3785 | opp_overlap 2573233 2573240, overlap 2573240 GCGCTGAACAGGCAA TAAAAAACCACC GCAA GGTGGTTTTTTA TTATCAGTGCGTTCC TERM 3084 2573260 - 2573233 - T 100 -14.4 -3.1855 | opp_overlap 2573233 2573240, overlap 2573240 GCGCTGAACAGGCAA TAAAAAACCACC GCAA GGTGGTTTTTTA TTATCAGTGCGTTCC TERM 3085 2573240 - 2573253 + T 100 -8.1 -5.56673 | opp_overlap 2573233 2573240, overlap 2573233 ACAGGCAATAAAAAA CCACC GCAA GGTGG TTTTTTATTATCAGT TERM 3086 2573253 - 2573240 - T 100 -8.1 -5.49234 | opp_overlap 2573240 2573233, overlap 2573233 ACAGGCAATAAAAAA CCACC GCAA GGTGG TTTTTTATTATCAGT Shewana3_2148 2573930 - 2573289 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase Shewana3_2149 2575777 - 2573951 - | phosphogluconate dehydratase Shewana3_2150 2576488 - 2575790 - | 6-phosphogluconolactonase Shewana3_2151 2577970 - 2576498 - | glucose-6-phosphate 1-dehydrogenase TERM 3087 2576713 - 2576726 + g 70 -4.5 -4.61231 | gap 1, opp_overlap 2576696 GACGCTCGTAAGCAT CG-GCG ATA CGCTCG TTTTTAAAGGTATCC Shewana3_2152 2578283 - 2579137 + | DNA-binding transcriptional regulator HexR Shewana3_2153 2579323 - 2580762 + | pyruvate kinase TERM 3088 2580854 - 2580825 - T 100 -12.3 -4.67904 | opp_overlap 2580831, overlap 2580831 CATCAAGCTTAAAAA CAAAAACCACCTC AATT GAGGTGGTTTTTT TATATCTTGTCAGGC TERM 3089 2580848 - 2580831 - T 100 -11.3 -5.61881 | opp_overlap 2580831, overlap 2580825 GCTTAAAAACAAAAA CCACCTC AATT GAGGTGG TTTTTTTATATCTTG TERM 3090 2580831 - 2580848 + T 100 -11.3 -5.80248 | opp_overlap 2580831 2580825 GCTTAAAAACAAAAA CCACCTC AATT GAGGTGG TTTTTTTATATCTTG Shewana3_2154 2583182 - 2580903 - | acyl-CoA dehydrogenase TERM 3091 2581700 - 2581716 + g 83 -10.1 -4.18018 | opp_overlap 2581697 GCGAGTCGAAACGCT CGAGCGC ATC GTGCTCG TTTTCCATCGCCGCG TERM 3092 2582840 - 2582820 - G 74 -2.5 -5.06451 | overlap 2582822 GATCAGCGCAAAAAA GCCTTCTTT CTT AAAGTAGTC CCACAGCTCTGGTGG Shewana3_2155 2583836 - 2583198 - | TetR family transcriptional regulator TERM 3093 2583648 - 2583613 - G 74 -9.8 -3.64703 | gap 1 GGCGCCGTATGTAAA CGT-TTTATGGCCGTCG ATG CGGCGGGCATAAACACG TCTAAATAGCGGGCT Shewana3_2156 2584055 - 2585914 + | peptidase M2, peptidyl-dipeptidase A TERM 3094 2585987 - 2586015 + T 100 -13.3 -4.19238 | opp_overlap 2585992, overlap 2585992 GAAAATGTAACCGAT AAAAATGCCCAAC GAT GTTGGGCATTTTC TTTTAAGCTTCGGCA TERM 3095 2586010 - 2585992 - T 100 -13.2 -4.91712 | opp_overlap 2585987 2585992 TGTAACCGATAAAAA TGCCCAAC GAT GTTGGGCA TTTTCTTTTAAGCTT TERM 3096 2585992 - 2586010 + T 100 -13.2 -5.10163 | opp_overlap 2585992, overlap 2585987 TGTAACCGATAAAAA TGCCCAAC GAT GTTGGGCA TTTTCTTTTAAGCTT Shewana3_2157 2586674 - 2586084 - | Smr protein/MutS2 TERM 3097 2587040 - 2587057 + G 74 -4.1 -5.00884 | overlap 2587030 TGGCCGCGACAGTAT CGTTGCT ATTT ACCAACG TTTTTTCGACAAAAT Shewana3_2158 2586807 - 2587385 + | hypothetical protein Shewana3_2159 2587413 - 2587907 + | SecC motif-containing protein TERM 3098 2587958 - 2587921 - T 100 -15.9 -2.92425 | opp_overlap 2587926 2587931, overlap 2587926 2587931 AACCAAGTCCACAGA TAAAACAAAAGGCAATC TATT GATTGCCTTTTGTTTTT ATATCACCTGTACGA TERM 3099 2587926 - 2587953 + T 100 -15.8 -4.9792 | opp_overlap 2587921 2587926 2587931, overlap 2587931 AGTCCACAGATAAAA CAAAAGGCAATC TATT GATTGCCTTTTG TTTTTATATCACCTG TERM 3100 2587953 - 2587926 - T 100 -15.8 -4.61199 | opp_overlap 2587926 2587931, overlap 2587921 2587931 AGTCCACAGATAAAA CAAAAGGCAATC TATT GATTGCCTTTTG TTTTTATATCACCTG TERM 3101 2587931 - 2587948 + T 100 -9.9 -5.38839 | opp_overlap 2587926 2587921 2587931, overlap 2587926 ACAGATAAAACAAAA GGCAATC TATT GATTGCC TTTTGTTTTTATATC TERM 3102 2587948 - 2587931 - T 100 -9.9 -5.24647 | opp_overlap 2587931 2587926, overlap 2587926 2587921 ACAGATAAAACAAAA GGCAATC TATT GATTGCC TTTTGTTTTTATATC Shewana3_2160 2590170 - 2587987 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TERM 3103 2588486 - 2588476 - G 70 -2.4 -5.00616 | overlap 2588477 GTTTCCGCTAAAAAA CTGC CGC GCCG ACACGTTAACATGCA Shewana3_2161 2590646 - 2590359 - | hypothetical protein Shewana3_2162 2591384 - 2590896 - | hypothetical protein TERM 3104 2591833 - 2591799 - R 78 -9.4 -3.71517 | overlap 2591807 CAAGATTTAAGATAA CTTTAAAATCAGACTC GAT GAGTCGGACTTAAAAG TTGAAGAAAATATGT TERM 3105 2591825 - 2591807 - R 73 -7.4 -4.2361 | overlap 2591799 AAGATAACTTTAAAA TCAGACTC GAT GAGTCGGA CTTAAAAGTTGAAGA TERM 3106 2592077 - 2592062 - R 100 -8.2 -5.24129 | TTTGCTGATAAAAAA CGCCCC ATTC GGAGCG TTAAAACTATTTCTA Shewana3_2163 2592797 - 2592129 - | radical activating enzyme Shewana3_2164 2592986 - 2593705 + | queuosine biosynthesis protein QueC Shewana3_2165 2593702 - 2594307 + | rhomboid family protein TERM 3107 2594366 - 2594342 - T 91 -5 -5.60689 | gap 1, opp_overlap 2594342 TCATACAATAAAAAA CCGCC-TCATA TTGT TATGTTGGCGG CTTTTTATTAAGTAG Shewana3_2166 2596468 - 2594447 - | excinuclease ABC subunit B TERM 3108 2595787 - 2595766 - G 70 -8.7 -3.64487 | opp_overlap 2595765 2595756 CGATACGTTTAACAA TTTGCCCCG TTAA CGGGTCAAA CTCGCTTAAGCGTTC TERM 3109 2599792 - 2599776 - g 70 -4.3 -4.70169 | CCATATTCAAGAAAA GCTCAAC GGC GACGAGC AGTTTGGGGATGACC Shewana3_2167 2598640 - 2600544 + | diguanylate cyclase/phosphodiesterase TERM 3110 2600688 - 2600716 + G 78 -9.7 -3.95022 | AGTGAATATCTCCTG TTGTTGATCAGCA CCG TACTGGTCAACAA TTTCGTATTAGTGAA Shewana3_2168 2600670 - 2601248 + | Na(+)-translocating NADH-quinone reductase subunit E Shewana3_2169 2601249 - 2601830 + | electron transport complex protein RnfB TERM 3111 2603261 - 2603250 - g 74 -2.2 -5.1356 | overlap 2603232 2603251 CTCGAGGAAGAAAAA CTCG CCCG CGAA GCCAAGGCTAAAGAA TERM 3112 2603371 - 2603361 - g 70 -2.4 -5.00884 | ATTGCGGCCAAAAAA GCGG CTG CTGC AGAAACCACAGCGGA TERM 3113 2603650 - 2603634 - g 78 -2.1 -5.22039 | overlap 2603600 2603599 2603635 GCCAAAGCGAAAAAA GCGGCGT TGA AGGCCGA CTCGGATGCCAATAG TERM 3114 2603970 - 2603958 - g 100 -6.9 -5.22039 | GCGAAAGCCAAAAAA GCCGC CAC GCAGC AGGCTGAATCGACTG Shewana3_2170 2601834 - 2604200 + | electron transport complex protein RnfC TERM 3115 2604200 - 2604224 + F 73 -8.5 -3.59315 | opp_overlap 2604200 2604198 2604194 CGACGCAAATGAATA GCACTGCGGGT TTT AACCTCAGTGC TTTGAAAATGATTAG TERM 3116 2604379 - 2604391 + G 79 -6.9 -4.62336 | GTTACCCGGCCTTGT GGTGC AAT GCGCC TTTTTCGGCTGGGGT TERM 3117 2604483 - 2604470 - g 70 -8.1 -3.72576 | GCCGCGGTGATGAAA CTGCG TAAC CGCAG CATCAAAGCGAGTTT Shewana3_2171 2604281 - 2605330 + | electron transport complex, RnfABCDGE type, D subunit TERM 3118 2605783 - 2605769 - g 71 -7.1 -4.24342 | TCGCCCACCAAGAAA CCCCA GGCCT TGGGG ATAAAATCGATTTAC Shewana3_2172 2605396 - 2606022 + | electron transport complex protein RnfG Shewana3_2173 2606015 - 2606713 + | SoxR-reducing system protein RsxE TERM 3119 2606741 - 2606762 + F 80 -11.7 -2.71364 | opp_overlap 2606741 2606732 2606730 ATAACAGCTTAAGTA GTGGGTTTA GCGT TAAACCCAC TGCTTACAAGGATCA TERM 3120 2606762 - 2606741 - f 81 -11.7 -2.75803 | opp_overlap 2606741, overlap 2606732 2606730 ATAACAGCTTAAGTA GTGGGTTTA GCGT TAAACCCAC TGCTTACAAGGATCA Shewana3_2174 2606780 - 2607415 + | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III TERM 3121 2608407 - 2608394 - g 74 -9.5 -3.52102 | overlap 2608372 2608395 ACCCTACGGACATAA GGCGG CTTC CCGCC GCGAATAAAACAAAA Shewana3_2175 2607529 - 2608851 + | phage integrase family protein TERM 3122 2609302 - 2609276 - g 72 -9.6 -3.45945 | CCTAGGGAGAAGCAA TTTTCATAAAGG CAT CCTTGATGAAAA AATAGGTGCGTACAG TERM 3123 2610283 - 2610273 - g 76 -8.2 -4.18197 | opp_overlap 2610280 AGTTGTCAGTCAAAA GGGG CCG CCCC GATGGGGTGCTATCC Shewana3_2176 2608848 - 2610494 + | hypothetical protein TERM 3124 2610891 - 2610867 - g 71 -5.7 -4.36914 | CTTCCCTTGATAAAA TTCAACACGTC ATC GACTCGCTGAA ATACTCTCGCCCCCT TERM 3125 2611057 - 2611075 + G 75 -8.8 -3.82665 | opp_overlap 2611053 2611052, overlap 2611059 TTCGGAAAAATCGCT GTTAGCGC TCG GCGCTATC TTTCATGATGTCATC TERM 3126 2611059 - 2611073 + G 72 -10 -3.49482 | opp_overlap 2611053 2611052, overlap 2611057 CGGAAAAATCGCTGT TAGCGC TCG GCGCTA TCTTTCATGATGTCA TERM 3127 2611311 - 2611293 - g 86 -3.1 -5.56673 | ATGGACAAGAAAAAA CAGTGCA TTATC TGAACTG GCGAGGCTCAAAGGG TERM 3128 2612594 - 2612578 - g 70 -8.7 -3.60296 | CACGTGCATGCTAAA GCACCTC ATT GAAGTGC TATCCGATGACGCCA Shewana3_2177 2610605 - 2612809 + | hypothetical protein Shewana3_2178 2612819 - 2613241 + | hypothetical protein TERM 3129 2613485 - 2613507 + T 78 -2 -5.51612 | overlap 2613486 GTTACATGTTTGCAT TGATGAATTT AAT ATATTCATCC TTTTGTTTTTTATCT Shewana3_2179 2614376 - 2613471 - | hypothetical protein Shewana3_2180 2615203 - 2614907 - | hypothetical protein Shewana3_2181 2616128 - 2615316 - | hypothetical protein Shewana3_2182 2618924 - 2616153 - | hypothetical protein TERM 3130 2617199 - 2617189 - G 73 -5.4 -4.62069 | TGTTCACTGGAAAAA GCTA ATT TAGC CGCTGGTTTGTTCAC Shewana3_2183 2622334 - 2618924 - | hypothetical protein TERM 3131 2619516 - 2619504 - G 78 -2.6 -5.33985 | GTCAAAAAAAACAAA CAGC CAATT GCCG CATCACGTGGACGCT Shewana3_2184 2623602 - 2622334 - | hypothetical protein TERM 3132 2622891 - 2622909 + g 76 -5.3 -4.8066 | gap 1 ACCGATAACAAGCCT GCCGA-AG AAAC CTATCGGC TTTTTGAATTCTATT Shewana3_2186 2624715 - 2624185 - | Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit-like protein Shewana3_2187 2626139 - 2624739 - | hypothetical protein Shewana3_2188 2629153 - 2626142 - | hypothetical protein Shewana3_2189 2629949 - 2629146 - | hypothetical protein TERM 3133 2629196 - 2629213 + g 70 -3.4 -4.89852 | TGTAATAGCGAATAG CCGATA TGATCC TGTCGG TTTTTGTCGATATCC TERM 3134 2629869 - 2629882 + g 83 -3.1 -5.47399 | AATGCCAGTTTTGAC TAGGG CTCG CTCTA TTTTTTTCCAATTGA TERM 3135 2630558 - 2630614 + G 90 -9.5 -4.49756 | opp_overlap 2630573 2630575, overlap 2630559 CAGTATGCATCTACA ACCTCTGGTATTAAAGATAGAGTGGTG ACC CCCCATTCTATATTTGAGGCCGGAGGG TTTTGGTATTTCCGA TERM 3136 2630559 - 2630613 + G 81 -13 -3.2913 | opp_overlap 2630573 2630575, overlap 2630558 AGTATGCATCTACAA CCTCTGGTATTAAAGATAGAGTGGTG ACC CCCCATTCTATATTTGAGGCCGGAGG GTTTTGGTATTTCCG Shewana3_2190 2630141 - 2631034 + | hypothetical protein TERM 3137 2631832 - 2631819 - g 70 -8.1 -3.70902 | TCGGCCAGAGCTAAA CCAGG TTAT CCTGG AGCTTATCTGTGAAA Shewana3_2191 2631322 - 2632935 + | IS4 family transposase Shewana3_2192 2633495 - 2633205 - | hypothetical protein Shewana3_2193 2633820 - 2633518 - | hypothetical protein Shewana3_2194 2635124 - 2634858 - | hypothetical protein TERM 3138 2635189 - 2635163 - R 100 -11.6 -4.53475 | overlap 2635160 ATCCGATAAAAATAA CCCTCAAGCACA GTT TGCACCTGAGGG CGGTTTTACTGCAAA Shewana3_2195 2635685 - 2635221 - | hypothetical protein Shewana3_2196 2636854 - 2635685 - | PepSY-associated TM helix domain-containing protein TERM 3139 2636795 - 2636781 - G 73 -5 -4.74013 | overlap 2636793 GTTAAACAGATAAAA CTGAAT AAA ATCCAG ATGGGCAAAGATACC Shewana3_2197 2637057 - 2637953 + | beta-lactamase domain-containing protein Shewana3_2198 2638294 - 2639196 + | hypothetical protein Shewana3_2199 2639989 - 2639207 - | hypothetical protein TERM 3140 2639463 - 2639421 - G 76 -8.5 -4.25104 | gap 1, overlap 2639423 2639447 GTCGGTTTAGCAAAA TACTGCGCGCCATAACGCTT ATCT AAG-GCTATGGCGCGACGCA CATAATCGCTTGGCT TERM 3141 2639461 - 2639423 - G 73 -8.9 -3.73042 | gap 1, overlap 2639421 2639447 CGGTTTAGCAAAATA CTGCGCGCCATAACGCTT ATCT AAG-GCTATGGCGCGACG CACATAATCGCTTGG Shewana3_2200 2642006 - 2640081 - | response regulator receiver protein TERM 3142 2641529 - 2641540 + g 70 -2.2 -5.02074 | GTTCCTGATCGATGC GGGT CAAA ATCC TTTTTTGCGAGATGG Shewana3_2201 2643496 - 2642294 - | response regulator receiver modulated diguanylate phosphodiesterase Shewana3_2202 2644374 - 2643493 - | XRE family transcriptional regulator Shewana3_2203 2644717 - 2644424 - | hypothetical protein TERM 3143 2644811 - 2644795 - R 100 -9.4 -5.49729 | opp_overlap 2644795 AAGCATGCAAAAAAA GCCGAG CTATT CTCGGC TTTTAATGGACGATA TERM 3144 2644795 - 2644811 + r 88 -9.4 -4.2558 | opp_overlap 2644795 AAGCATGCAAAAAAA GCCGAG CTATT CTCGGC TTTTAATGGACGATA Shewana3_2204 2646047 - 2644839 - | Bcr/CflA subfamily drug resistance transporter TERM 3145 2646092 - 2646055 - R 76 -7.9 -4.13767 | opp_overlap 2646060 TTTGTCATGTTAAAA TCCAATTATTGCTATGA ATGT TTACAGCGATAATTGGA TAAAAGGCACCGCCC Shewana3_2205 2647620 - 2646442 - | AraC family transcriptional regulator Shewana3_2206 2648585 - 2647620 - | diguanylate cyclase Shewana3_2207 2649216 - 2652050 + | TonB-dependent receptor TERM 3146 2653161 - 2653142 - g 78 -3.6 -5.09426 | gap 1, overlap 2653143 2653144 CTGAACCGGAAAAAA GCCTAGTGC TTG GCACTA-AC AAACGTTGGGGGCTA TERM 3147 2653735 - 2653725 - g 79 -6.8 -4.62783 | TATTCACGGTAAAAA GCAG GAT CTGC TGGTGGTGTCGAGTC Shewana3_2208 2652076 - 2654037 + | phytase TERM 3148 2654091 - 2654103 + F 100 -9.1 -4.91473 | opp_overlap 2654085 GAATGATAACCGAGT CCGAG TGG CTCGG TTTATTTTTGCCTTG TERM 3149 2655728 - 2655706 - g 84 -11.4 -3.94 | opp_overlap 2655705 2655704 TGAATCCTTAAATAA TGCCCTCAAA GAT TTTGAAGGCA CATTGATTTTCGTTA Shewana3_2209 2654270 - 2655862 + | ABC transporter related TERM 3150 2655965 - 2655937 - T 78 -5.2 -4.93288 | opp_overlap 2655937, overlap 2655932 AAGACCCAAAGAAAA GACGCTTCACTC TACTC GAGCTTAGCGTC TTTTTTATACTCCCC TERM 3151 2655937 - 2655965 + T 79 -3 -5.31275 | opp_overlap 2655932 2655937 AAGACCCAAAGAAAA GACGCTTCACTC TACTC GAGCTTAGCGTC TTTTTTATACTCCCC Shewana3_2210 2656469 - 2656020 - | activator of Hsp90 ATPase family protein Shewana3_2211 2657629 - 2656568 - | NERD domain-containing protein TERM 3152 2657250 - 2657230 - G 70 -2.6 -5.02439 | gap 1, overlap 2657233 ACACAAGTATAAAAA TCAGAATCG ACAA CGACTC-GA GTACTGAAGAGATGG Shewana3_2212 2657947 - 2659578 + | response regulator receiver modulated diguanylate cyclase TERM 3153 2659746 - 2659771 + T 89 -12.7 -2.75229 | overlap 2659766 CTATTTATAAGCGCT TTTAGTCTCGC TTAA GCGAGGCTAAA TAGTTGAGCATTTTA Shewana3_2213 2660802 - 2659747 - | response regulator receiver modulated CheB methylesterase Shewana3_2214 2661426 - 2660806 - | chemoreceptor glutamine deamidase CheD Shewana3_2215 2662257 - 2661427 - | MCP methyltransferase, CheR-type Shewana3_2216 2664231 - 2662258 - | methyl-accepting chemotaxis sensory transducer TERM 3154 2662343 - 2662366 + g 85 -7.4 -4.77036 | overlap 2662338 2662347 ATGCGAGTCACTGTC GATGGCGGTT GCTT AACCGCTAAC TTTTTGGTGCTCGCC Shewana3_2217 2664749 - 2664237 - | CheW protein Shewana3_2218 2666878 - 2664764 - | CheA signal transduction histidine kinases TERM 3155 2666063 - 2666078 + g 76 -4.6 -5.00616 | overlap 2666075 AGATTTAAGTTGGGC GCTGTC TTTA GGCGGC TTTTTTGAACGAGCC Shewana3_2219 2667262 - 2666897 - | response regulator receiver protein Shewana3_2220 2668960 - 2667263 - | response regulator receiver protein Shewana3_2221 2669254 - 2668961 - | anti-sigma-factor antagonist Shewana3_2222 2670405 - 2669269 - | methyl-accepting chemotaxis sensory transducer Shewana3_2223 2670680 - 2673394 + | CoA-binding domain-containing protein TERM 3156 2673463 - 2673426 - T 80 -10.2 -3.48276 | gap 2, opp_overlap 2673433, overlap 2673433 CCCCGCTGGACACAA TA-AAAAACGCCGCA-CT CAAA AGATGCGGCGTTTTTCTA TTTATCATGCATTTA TERM 3157 2673433 - 2673455 + T 100 -9.9 -5.24799 | gap 1, opp_overlap 2673426 2673433 GGACACAATAAAAAA CGCCGCACTC AAAA GA-TGCGGCG TTTTTCTATTTATCA TERM 3158 2673455 - 2673433 - T 100 -9.9 -5.60689 | gap 1, opp_overlap 2673433, overlap 2673426 GGACACAATAAAAAA CGCCGCA-CT CAAA AGATGCGGCG TTTTTCTATTTATCA Shewana3_2224 2675098 - 2673518 - | EmrB/QacA family drug resistance transporter TERM 3159 2674640 - 2674600 - G 81 -12.5 -3.30443 | overlap 2674602 2674609 CGACCATCACACCAA CACCCCAAAGGGCCATGGC CGA ACCATGGCGCTCTGGCGGG TAACTGTCGAGTAAT TERM 3160 2674638 - 2674602 - G 83 -13.7 -3.21668 | overlap 2674600 2674609 ACCATCACACCAACA CCCCAAAGGGCCATGGC CGA ACCATGGCGCTCTGGCG GGTAACTGTCGAGTA TERM 3161 2674631 - 2674609 - G 77 -9.8 -3.67517 | overlap 2674602 2674600 CACCAACACCCCAAA GGGCCATGGC CGA ACCATGGCGC TCTGGCGGGTAACTG Shewana3_2225 2676150 - 2675095 - | secretion protein HlyD family protein Shewana3_2226 2676642 - 2676208 - | MarR family transcriptional regulator TERM 3162 2676683 - 2676645 - R 100 -14.8 -3.2963 | opp_overlap 2676658 ATGAGGTTTTCATAA GCCATCCACATAGTAAGC ATT GCTTATTATATGGATGAC ATCGAATGTAAAGCA Shewana3_2227 2677911 - 2676883 - | diguanylate cyclase TERM 3163 2678017 - 2678044 + r 100 -15.8 -3.08813 | opp_overlap 2678017, overlap 2678021 TAAGGCGCAAAAAAA TAAAGGAGGATG TTGC CATCCTCCTTTA TGTATTCACCTGCAC TERM 3164 2678044 - 2678017 - R 100 -15.8 -5.43866 | opp_overlap 2678017 2678021 TAAGGCGCAAAAAAA TAAAGGAGGATG TTGC CATCCTCCTTTA TGTATTCACCTGCAC TERM 3165 2678021 - 2678040 + r 100 -12.2 -4.21142 | opp_overlap 2678017, overlap 2678017 GCGCAAAAAAATAAA GGAGGATG TTGC CATCCTCC TTTATGTATTCACCT Shewana3_2228 2679692 - 2678067 - | sulfatase TERM 3166 2679456 - 2679435 - G 74 -3.7 -5.0133 | gap 1 GAGCGCCGCAAAAAA CACGCTCGAT GAC AGC-AGCGTG AGAATGATGAAAAAG TERM 3167 2679874 - 2679849 - R 87 -4.7 -5.53991 | TACGGATTAAAAAAA CGGCCGAAC CTCAAGGC ATTCGACCG TTTTTTGCTCCCCAA Shewana3_2229 2682044 - 2679951 - | peptidase S9 prolyl oligopeptidase TERM 3168 2682241 - 2682256 + r 100 -11.8 -3.77196 | opp_overlap 2682241 TTATGCCATAAAAAA GCGCCC AATG GGGCGC TTTAGTGAATACTCA TERM 3169 2682256 - 2682241 - R 100 -11.8 -5.26316 | opp_overlap 2682241 TTATGCCATAAAAAA GCGCCC AATG GGGCGC TTTAGTGAATACTCA Shewana3_2230 2682753 - 2682292 - | MarR family transcriptional regulator Shewana3_2231 2684003 - 2682753 - | cation diffusion facilitator family transporter TERM 3170 2684324 - 2684285 - H 100 -15.2 -4.03167 | overlap 2684287 2684291 CGATAAGGCAAATAA CACAAAGGCGCTTAAATC AATC GACTTAAGCGCCTCTGCA TGGGAAGGGATTTGA TERM 3171 2684322 - 2684287 - H 100 -17.8 -3.59975 | overlap 2684285 2684291 ATAAGGCAAATAACA CAAAGGCGCTTAAATC AATC GACTTAAGCGCCTCTG CATGGGAAGGGATTT TERM 3172 2684318 - 2684291 - H 100 -15 -4.40333 | overlap 2684287 2684285 GGCAAATAACACAAA GGCGCTTAAATC AATC GACTTAAGCGCC TCTGCATGGGAAGGG Shewana3_2232 2684707 - 2685117 + | lactoylglutathione lyase TERM 3173 2685141 - 2685177 + T 100 -16.8 -3.79747 | opp_overlap 2685146, overlap 2685146 CCTTCCCGCCTGATA TAAAACGGCGTTTGCA TACCC TGCAAACGCCGTTTTC TTTGCTCATAAATAA TERM 3174 2685172 - 2685146 - T 100 -16.7 -4.52589 | opp_overlap 2685141 2685146 CCGCCTGATATAAAA CGGCGTTTGCA TACCC TGCAAACGCCG TTTTCTTTGCTCATA TERM 3175 2685146 - 2685172 + T 100 -16.7 -4.95484 | opp_overlap 2685146, overlap 2685141 CCGCCTGATATAAAA CGGCGTTTGCA TACCC TGCAAACGCCG TTTTCTTTGCTCATA Shewana3_2233 2685856 - 2685209 - | putative sulfite oxidase subunit YedZ Shewana3_2234 2687002 - 2685968 - | putative sulfite oxidase subunit YedY TERM 3176 2687728 - 2687707 - g 74 -2.3 -5.1675 | gap 1, overlap 2687709 2687723 CCATGCAGGAAAAAA TCG-CCACCT TAG AAATGGCCGA AGTTCGCCTACAAAC Shewana3_2235 2687277 - 2688842 + | hypothetical protein TERM 3177 2688981 - 2689009 + G 85 -11.7 -3.67864 | opp_overlap 2688979, overlap 2688982 2689004 TCCAGCGCAATTATC ATCGCAGGGGCAT TTA ATGCCTCTGCGGC TTTCGCGTTAACTTC TERM 3178 2688982 - 2689008 + G 84 -15.2 -2.80236 | opp_overlap 2688979, overlap 2688981 2689004 CCAGCGCAATTATCA TCGCAGGGGCAT TTA ATGCCTCTGCGG CTTTCGCGTTAACTT TERM 3179 2689383 - 2689369 - g 72 -8.5 -3.84719 | opp_overlap 2689378 AGGGCGAAACCCAAA CCGCC TACAC GGCGG CGCAGTCACTTTGGG TERM 3180 2690436 - 2690447 + G 72 -3.6 -4.84527 | opp_overlap 2690419 CGCGCCATTAGCCGC CGCG AAAG TGCG TTTTTCCTCTATGCG Shewana3_2236 2688936 - 2690861 + | lytic transglycosylase, catalytic TERM 3181 2690928 - 2690893 - f 100 -12 -3.78022 | opp_overlap 2690896, overlap 2690896 2690899 GGGATAGTTATCAAA CAGTAATCAAGGTGGC GTTG GCCACCTTGATTATTT TTGGCCACATCAAGA TERM 3182 2690925 - 2690896 - f 100 -18.1 -2.67934 | opp_overlap 2690896, overlap 2690893 2690899 ATAGTTATCAAACAG TAATCAAGGTGGC GTTG GCCACCTTGATTA TTTTTGGCCACATCA TERM 3183 2690896 - 2690925 + F 100 -18.1 -4.57569 | opp_overlap 2690896 2690893 2690899 ATAGTTATCAAACAG TAATCAAGGTGGC GTTG GCCACCTTGATTA TTTTTGGCCACATCA TERM 3184 2690922 - 2690899 - f 100 -15.4 -3.48269 | opp_overlap 2690896, overlap 2690896 2690893 GTTATCAAACAGTAA TCAAGGTGGC GTTG GCCACCTTGA TTATTTTTGGCCACA TERM 3185 2691503 - 2691478 - g 70 -9.7 -3.1855 | gap 1 GCGGCCAATATTCAA GTGGCGCTCGAT GAT ATCG-GCGCCCC TCACTCCATGCTCTC Shewana3_2237 2691076 - 2691777 + | diguanylate phosphodiesterase TERM 3186 2692067 - 2692055 - f 78 -10.5 -3.39844 | overlap 2692053 GTCAGATGTGAAAGA GCGGC CAT GCCGC CAACAGTCACAGTTG TERM 3187 2692386 - 2692416 + F 72 -9.9 -2.87772 | gap 1, opp_overlap 2692395, overlap 2692395 ATTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TGGTGTATTTTATAA TERM 3188 2692406 - 2692395 - f 73 -7.2 -4.09511 | opp_overlap 2692386 2692395 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 3189 2692395 - 2692406 + F 81 -7.2 -4.60487 | opp_overlap 2692395, overlap 2692386 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG Shewana3_2238 2692598 - 2692966 + | hypothetical protein Shewana3_2239 2693093 - 2693545 + | GCN5-related N-acetyltransferase TERM 3190 2693590 - 2693560 - f 73 -9.7 -3.05562 | ACAAACGCCTCAAGA GGGACTGTCAACG AGCGG CGTTTCCAGTCCC AATGAGCCACGGTGG Shewana3_2240 2693621 - 2694487 + | hypothetical protein TERM 3191 2694507 - 2694547 + F 100 -12.6 -3.50853 | opp_overlap 2694501, overlap 2694507 GCTAACAAGTCGCTC G-TGTGGGACGCTGTGCCGC TGC GCGTCAC-GCGCCCCACAGC TTATCGTTAGGGCAA TERM 3192 2694507 - 2694546 + F 91 -12.8 -2.70298 | gap 1, opp_overlap 2694501, overlap 2694507 GCTAACAAGTCGCTC GTGTGGGACGCTGTGCCGC TGC GCGTCAC-GCGCCCCACAG CTTATCGTTAGGGCA TERM 3193 2694864 - 2694880 + F 74 -8.1 -4.03995 | ATCCCCTCGTTGGTT TTTATGC TTG GCATAAA TCTTTTTGTACAAAC Shewana3_2241 2695078 - 2695512 + | hypothetical protein TERM 3194 2695565 - 2695516 - f 100 -15.3 -3.66772 | gap 1, opp_overlap 2695522 2695537, overlap 2695517 2695522 TCAAATGCCTAACAA GTTAAACAGCGGAAAACCACTCGC TGC GCTAGCG-TTTTCCGCTGTTTAAA GCATCACTCCATAGA TERM 3195 2695564 - 2695517 - f 100 -18.8 -2.79581 | gap 1, opp_overlap 2695522 2695537, overlap 2695516 2695522 CAAATGCCTAACAAG TTAAACAGCGGAAAACCACTCGC TGC GCTAGCG-TTTTCCGCTGTTTAA AGCATCACTCCATAG TERM 3196 2695522 - 2695559 + F 91 -12.1 -3.55761 | gap 1, opp_overlap 2695522 2695517 2695516, overlap 2695537 GCCTAACAAGTTAAA CAGCGGAAAACCACTCGC TGC GCTAGC-GTTTTCCGCTG TTTAAAGCATCACTC TERM 3197 2695559 - 2695522 - f 100 -14.3 -3.85389 | gap 1, opp_overlap 2695522 2695537, overlap 2695517 2695516 GCCTAACAAGTTAAA CAGCGGAAAACCACTCGC TGC GCTAGCG-TTTTCCGCTG TTTAAAGCATCACTC TERM 3198 2695600 - 2695625 + F 70 -2.7 -5.06816 | gap 1, opp_overlap 2695603, overlap 2695603 GTAATCCGAAACTCA TAAGTTAGAGTT AAT AAC-CTAACTGA TTTTTGTTCCAAAGT TERM 3199 2695733 - 2695714 - f 80 -11.4 -2.65264 | CGATTAGCGAGACGA CCGTCCGC CCCC ACGGACGG GGCGGTCGAGCATCC Shewana3_2242 2695929 - 2696870 + | ATPase TERM 3200 2697583 - 2697572 - g 74 -7.2 -4.24075 | ATCGATGAATACAAA GGGC TTAA GCCC CATGTGCTCGGAGAA Shewana3_2243 2696921 - 2698006 + | hypothetical protein TERM 3201 2698570 - 2698596 + G 74 -4.5 -4.87626 | gap 2 GCTAAATTATTGCTT CAG-AGT-GTGCC ACT GGCGCTACTGCTG TTTTTGGTCTTGCCG Shewana3_2244 2698003 - 2700150 + | transglutaminase domain-containing protein TERM 3202 2700529 - 2700514 - g 83 -9 -4.4078 | TGTCCCCAAGGAAAA CGCCTT CACT AAGGCG GCTATGACCTGGAAG Shewana3_2245 2700260 - 2703964 + | exodeoxyribonuclease V, gamma subunit TERM 3203 2705016 - 2704999 - g 72 -4.1 -4.8622 | TTTGCCAAGCAAAAA CAGCAAA AAAA TGTGCTG ACACCAGATGATCTG TERM 3204 2705744 - 2705730 - g 74 -11.4 -3.14463 | opp_overlap 2705729 2705728 2705726, overlap 2705718 2705717 AACCGCGCTGAGCAA GCGCCA GAT TGGCGC CGTCTTTTTAAGTCG TERM 3205 2705955 - 2705914 - g 72 -10.1 -3.42147 | opp_overlap 2705929, overlap 2705916 2705927 TTTAACCAAGATGAA GAGCAGCGCCAAAGACTGC TGGA GCAGTTTTTTGAGCTGCAC CAGATCTGGCAAAAA TERM 3206 2705953 - 2705916 - g 76 -11.3 -3.27602 | opp_overlap 2705929, overlap 2705914 2705927 TAACCAAGATGAAGA GCAGCGCCAAAGACTGC TGGA GCAGTTTTTTGAGCTGC ACCAGATCTGGCAAA TERM 3207 2705929 - 2705940 + G 81 -5.8 -5.0538 | opp_overlap 2705927 2705916 2705914 GAGCAGCGCCAAAGA CTGC TGGA GCAG TTTTTTGAGCTGCAC TERM 3208 2705988 - 2705971 - g 79 -7.7 -4.59109 | gap 1, overlap 2705973 CAGATCTGGCAAAAA CG-CGGCA TTA TGCCGGCG CTGCTCAGCCTAGCC TERM 3209 2707705 - 2707689 - g 74 -12.3 -2.78596 | GATTTTGGCATTAGA TGCGCTG TTT CAGCGCA GCCTAGAGACAAGCA Shewana3_2246 2703964 - 2707755 + | exodeoxyribonuclease V, beta subunit TERM 3210 2707804 - 2707788 - g 88 -10.9 -4.17316 | ACTCCCCCAAAAGAA TCAACCC AAT GGGTTGA AGCTGGCGCACTCAG Shewana3_2247 2707752 - 2709857 + | exodeoxyribonuclease V, alpha subunit Shewana3_2248 2709925 - 2710320 + | hypothetical protein TERM 3211 2710686 - 2710662 - g 70 -9.3 -3.53091 | opp_overlap 2710666 2710667, overlap 2710667 ATCTCGCTCGCGAAA CAAAATGTCCC CTC GGGTCACTTTG AGCTCATGGACTGCC TERM 3212 2710681 - 2710667 - g 76 -5.6 -4.86731 | opp_overlap 2710666 2710667, overlap 2710662 GCTCGCGAAACAAAA TGTCCC CTC GGGTCA CTTTGAGCTCATGGA Shewana3_2249 2710401 - 2711054 + | methyltransferase type 12 Shewana3_2250 2711588 - 2712895 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Shewana3_2251 2713015 - 2713704 + | DNA polymerase III, epsilon subunit TERM 3213 2713780 - 2713757 - T 100 -11 -5.5112 | opp_overlap 2713757 CGCATCAATAAAAAA GCCGAGTGTT ATCA ATCACTCGGC TTAATGATTCAATCA TERM 3214 2713757 - 2713780 + T 81 -11 -3.2827 | opp_overlap 2713757 CGCATCAATAAAAAA GCCGAGTGTT ATCA ATCACTCGGC TTAATGATTCAATCA Shewana3_2252 2714849 - 2713809 - | LacI family transcription regulator Shewana3_2253 2715784 - 2715068 - | hypothetical protein TERM 3215 2716700 - 2716727 + G 76 -2.8 -5.07011 | gap 1 ACAAAGTCTTAAAGC CGTGATCATC-GA TTA TCTGATTATCATG TTTTTAATTTCTGTA TERM 3216 2717533 - 2717521 - g 70 -10.5 -2.89169 | overlap 2717511 2717520 AATTACAAGCCAAAG CCCGC GAA GCGGG TAATGCCATGGCGGC Shewana3_2254 2716134 - 2717771 + | methyl-accepting chemotaxis sensory transducer TERM 3217 2717798 - 2717831 + F 84 -11.2 -3.63895 | opp_overlap 2717804, overlap 2717799 2717804 2717826 AGATAAGCAACCGCC ATAAAAGAGGACGT ATTAGA ACGTCCTCTTTTAG TTTAAAATACTTCAC TERM 3218 2717799 - 2717830 + F 100 -14.7 -2.78015 | opp_overlap 2717804, overlap 2717798 2717804 2717826 GATAAGCAACCGCCA TAAAAGAGGACGT ATTAGA ACGTCCTCTTTTA GTTTAAAATACTTCA TERM 3219 2717804 - 2717825 + F 100 -10.2 -4.55798 | opp_overlap 2717804, overlap 2717799 2717798 GCAACCGCCATAAAA GAGGACGT ATTAGA ACGTCCTC TTTTAGTTTAAAATA TERM 3220 2717825 - 2717804 - f 100 -10.2 -4.4017 | opp_overlap 2717799 2717798 2717804 GCAACCGCCATAAAA GAGGACGT ATTAGA ACGTCCTC TTTTAGTTTAAAATA Shewana3_2255 2717932 - 2718327 + | hypothetical protein Shewana3_2256 2718351 - 2718608 + | HPr family phosphocarrier protein TERM 3221 2719226 - 2719239 + G 72 -9.5 -3.41988 | overlap 2719224 ATTTTAGCCCGCGCG GCGGG GATC CCCGC TATTCTTAGCTGCCA TERM 3222 2719281 - 2719316 + G 100 -9.7 -5.06414 | gap 1 AGTTTATTCCCAATG GCACACCACTG-GTGC TCGAT GCCCTCAGTGGTGAGC TTTTTGTTAACCCAG Shewana3_2257 2718641 - 2720344 + | phosphoenolpyruvate--protein phosphotransferase TERM 3223 2720583 - 2720553 - g 90 -9.7 -4.53303 | TATTTGCAGAGAAAA TTGTGGGTGATGG TATCG CCATCGCCCCCAA GGGAGACACGATTGT Shewana3_2258 2720417 - 2720926 + | glucose-specific PTS system component Shewana3_2259 2721431 - 2721069 - | hypothetical protein Shewana3_2260 2722034 - 2721519 - | hypothetical protein TERM 3224 2722407 - 2722387 - R 100 -12.6 -5.53991 | CATTTAGTAAAAAAA TGGCCCGA ACATG TCGGGCCA TAGTGGTCATAGTCG Shewana3_2261 2723460 - 2722468 - | hypothetical protein Shewana3_2262 2723734 - 2724405 + | glutathione S-transferase domain-containing protein Shewana3_2263 2724527 - 2724751 + | hypothetical protein TERM 3225 2724798 - 2724829 + T 100 -14.7 -3.3447 | opp_overlap 2724805, overlap 2724805 GTGTTGAATGAGCCA TAAAAAAGCGCGA ACAATA TCGCGCTTTTTTA TTAGGTTTGCTTCTA TERM 3226 2724805 - 2724822 + T 100 -8.4 -5.52096 | opp_overlap 2724805, overlap 2724798 ATGAGCCATAAAAAA GCGCGA ACAATA TCGCGC TTTTTTATTAGGTTT TERM 3227 2724822 - 2724805 - T 100 -8.4 -5.28778 | opp_overlap 2724805 2724798 ATGAGCCATAAAAAA GCGCGA ACAATA TCGCGC TTTTTTATTAGGTTT Shewana3_2264 2726599 - 2724842 - | sulphate transporter TERM 3228 2725545 - 2725513 - G 75 -10.5 -3.43619 | opp_overlap 2725511 2725513, overlap 2725516 AGGAAATCGAAGCAA TCACCAATACCACGC CGA GCGCGGAACTGGGGA TATATTTCAGTGGTG Shewana3_2265 2727419 - 2726793 - | lysine exporter protein LysE/YggA TERM 3229 2727994 - 2728007 + G 86 -8.1 -4.68424 | opp_overlap 2728003, overlap 2728003 GATCTTTACCCATGG TGGCC AACA GGCCA TTTTTGCCTGCCTTA TERM 3230 2728285 - 2728259 - g 74 -2.2 -5.09685 | CAACAGAGAGAAAAA CTGTTAACACTC GCG GAGCAGTATCAG TTTTATATCATTGAA Shewana3_2266 2727488 - 2728870 + | GntR family transcriptional regulator TERM 3231 2728932 - 2728904 - T 100 -11.8 -5.05712 | opp_overlap 2728908, overlap 2728908 AGAAAGAAGCAAAAA GAAACGCCAGAG TGATG CTCTGGCGTTTT AAACTTGGTTAATCA TERM 3232 2728908 - 2728928 + T 100 -13.3 -4.21768 | opp_overlap 2728904 2728908 AGAAGCAAAAAGAAA CGCCAGAGT GAT GCTCTGGCG TTTTAAACTTGGTTA TERM 3233 2728928 - 2728908 - T 100 -12.6 -4.98128 | opp_overlap 2728908, overlap 2728904 AGAAGCAAAAAGAAA CGCCAGAG TGATG CTCTGGCG TTTTAAACTTGGTTA Shewana3_2267 2730877 - 2729003 - | alkaline phosphatase TERM 3234 2729350 - 2729362 + g 73 -3.3 -4.91657 | overlap 2729351 GTCCCTTATCGTCAC TGCGA CTA TCGCC TTTGTTTTCTTCGTT TERM 3235 2729964 - 2729985 + g 74 -6.5 -4.39287 | overlap 2729965 2729968 2729977 TCTAAGTCCTGCGCG ACAGTGGCC ATAG GGCCATTGA TTTTAATGTCCTTGG TERM 3236 2729965 - 2729984 + g 70 -10 -3.22849 | overlap 2729964 2729968 2729977 CTAAGTCCTGCGCGA CAGTGGCC ATAG GGCCATTG ATTTTAATGTCCTTG TERM 3237 2729968 - 2729981 + g 70 -8.1 -3.73858 | overlap 2729965 2729964 2729977 AGTCCTGCGCGACAG TGGCC ATAG GGCCA TTGATTTTAATGTCC TERM 3238 2731281 - 2731304 + H 79 -6.9 -4.62336 | opp_overlap 2731279 TGAGCCGCGAATAGG CAAAATTGT TACCCT ACAATTTTG TTTTTCGAGTGACAT Shewana3_2268 2731359 - 2732582 + | Bcr/CflA subfamily drug resistance transporter TERM 3239 2732707 - 2732673 - f 100 -12.3 -4.41348 | gap 1, opp_overlap 2732673 TGTTTTCTAAATAAA CGGCACTC-AGGTTAT ATAT AGAACCTTGAGTGCCG TTTTTCATTGTAAAT TERM 3240 2732673 - 2732707 + F 100 -12.3 -4.93968 | gap 1, opp_overlap 2732673 TGTTTTCTAAATAAA CGGCACTC-AGGTTAT ATAT AGAACCTTGAGTGCCG TTTTTCATTGTAAAT TERM 3241 2733499 - 2733522 + G 72 -9.5 -3.36492 | overlap 2733502 CCTTTTATATTGCTT CCACGGGGC GCCCCG GCCCCGTCG TTGTCGACTTGCCAA TERM 3242 2733824 - 2733809 - g 70 -3.2 -4.87665 | TGGCACCCATAAAAA CAGCTT AGGC ATGCTG GGGATGCACGGTCGC Shewana3_2269 2733051 - 2734769 + | acetolactate synthase 3 catalytic subunit Shewana3_2270 2734769 - 2735263 + | acetolactate synthase 3 regulatory subunit TERM 3243 2735374 - 2735356 - T 100 -11.7 -4.02817 | opp_overlap 2735356 GTGGGATAACAATAA GGGGAGC ACTAA GCTCCCC TTCTTTATCCGCGCA TERM 3244 2735356 - 2735374 + T 100 -11.7 -4.06419 | opp_overlap 2735356 GTGGGATAACAATAA GGGGAGC ACTAA GCTCCCC TTCTTTATCCGCGCA Shewana3_2271 2735841 - 2735398 - | heat shock protein Hsp20 TERM 3245 2736123 - 2736108 - R 100 -10.4 -5.45652 | opp_overlap 2736107 2736108 ATCGCCAATAAAAAA GGAGCC CTTA GGCTCC CTTCTTCGGTCTCAC TERM 3246 2736108 - 2736123 + r 75 -10.4 -2.82142 | opp_overlap 2736108, overlap 2736107 ATCGCCAATAAAAAA GGAGCC CTTA GGCTCC CTTCTTCGGTCTCAC Shewana3_2272 2736577 - 2736146 - | nucleoside diphosphate kinase TERM 3247 2736749 - 2736720 - R 100 -8.6 -4.96848 | gap 1 TTGTTCACACAAAAA CGCCAGCCC-ATG TTTTC CACCGGACTGGCG AAAGGATAACAACAC TERM 3248 2736787 - 2736772 - R 76 -7.6 -4.10731 | AACAACACAACTAAA TTGGCA TATT TGCCAA AGACTCAGGGGTTAT TERM 3249 2737094 - 2737082 - R 71 -4.1 -4.86033 | AAACTCCTACAAAAA TCCCA TTT TAGGA GAGATGAAACGTGAT TERM 3250 2737097 - 2737126 + r 71 -5 -4.74103 | opp_overlap 2737097 2737104, overlap 2737125 TCCCATTTTAGGAGA GATGAAACGTGA TCAATC TCACGTGACATC TTTTTCACTTGGACA Shewana3_2273 2737359 - 2737162 - | hypothetical protein Shewana3_2274 2738327 - 2737428 - | SSU ribosomal protein S6P modification protein TERM 3251 2738112 - 2738092 - G 71 -11.1 -2.77043 | overlap 2738091 CCCATCATCTCAAAC TGGCGCAGC ACA GCTGAGCCA TAAAAAGTAATCGAA TERM 3252 2738428 - 2738462 + r 70 -10.1 -2.53822 | opp_overlap 2738429 2738437, overlap 2738437 ATGCTGGGCGCCAGA AGCCAAAAACCAGTC ACATG GACTGGTTTTTGACG ATATTATCGCATCGG TERM 3253 2738461 - 2738429 - R 100 -15.8 -3.28712 | opp_overlap 2738428 2738437, overlap 2738437 TGCTGGGCGCCAGAA GCCAAAAACCAGTC ACATG GACTGGTTTTTGAC GATATTATCGCATCG TERM 3254 2738437 - 2738453 + r 86 -8 -4.62302 | opp_overlap 2738429 2738437, overlap 2738428 GCCAGAAGCCAAAAA CCAGTC ACATG GACTGG TTTTTGACGATATTA TERM 3255 2738453 - 2738437 - R 91 -8 -4.78149 | opp_overlap 2738437 2738428, overlap 2738429 GCCAGAAGCCAAAAA CCAGTC ACATG GACTGG TTTTTGACGATATTA Shewana3_2275 2738818 - 2738483 - | ferredoxin, 2Fe-2S type, ISC system hscA 2740689 - 2738827 - | chaperone protein HscA hscB 2741281 - 2740757 - | co-chaperone HscB TERM 3256 2741000 - 2741016 + g 70 -9.5 -3.28866 | opp_overlap 2741013 2741014, overlap 2740998 ACGCCATTCCATCTG CTGCATT AAA AATGCAG TGTCTTTCACTGTGG Shewana3_2278 2741620 - 2741297 - | iron-sulfur cluster assembly protein IscA Shewana3_2279 2742018 - 2741635 - | scaffold protein TERM 3257 2741983 - 2741963 - G 74 -9.7 -3.53012 | opp_overlap 2741966, overlap 2741948 2741966 TCGTTCTTGTCGAAA GAACCAACG TTA CGTGGGTTC TCATAATGATCTATC Shewana3_2280 2743270 - 2742056 - | cysteine desulfurase IscS Shewana3_2281 2743810 - 2743349 - | BadM/Rrf2 family transcriptional regulator TERM 3258 2744005 - 2743979 - R 78 -9.5 -3.67417 | AGATTCAATGCTAAA GGGGCAATTAA TCGTC CTAATCGCCCC CATATCGGGATCTAA Shewana3_2282 2744982 - 2744161 - | serine O-acetyltransferase TERM 3259 2744923 - 2744911 - G 80 -10.5 -3.67517 | opp_overlap 2744922 GACCAAGATCTCAAA GGCGC TGC GCGCC GCGGGATCACGGTGA TERM 3260 2745010 - 2745030 + r 85 -4 -5.47159 | overlap 2745012 CGCGATTAGCGTTAT TTGCCAAA TGTGC TTTGGCTA TTTTTGTTTGTTACC TERM 3261 2745012 - 2745028 + r 74 -6.6 -4.35561 | overlap 2745010 CGATTAGCGTTATTT GCCAAA TGTGC TTTGGC TATTTTTGTTTGTTA Shewana3_2283 2745753 - 2745028 - | RNA methyltransferase TERM 3262 2746156 - 2746139 - g 70 -4.2 -4.64861 | CGCGGCGAAAACAAA GACTAT GTTTGG ATAGTC GATCCTCTGGATGGC Shewana3_2284 2745908 - 2746711 + | inositol monophosphatase TERM 3263 2746733 - 2746775 + T 100 -15.9 -3.01022 | gap 1, opp_overlap 2746733 2746745, overlap 2746745 CCTGTAGGCAGTAAC GCATATTAAAAAGGCCAGTG AATT CACTGGCCTTTTTATT-TGC TGCTTTCGTACTTTA TERM 3264 2746775 - 2746733 - T 100 -15.9 -2.50816 | gap 1, opp_overlap 2746733 2746745, overlap 2746745 CCTGTAGGCAGTAAC GCATATTAAAAAGGCCAGTG AATT CACTGGCCTTTTTATT-TGC TGCTTTCGTACTTTA TERM 3265 2746745 - 2746764 + T 100 -13.6 -5.34309 | opp_overlap 2746733 2746745, overlap 2746733 AACGCATATTAAAAA GGCCAGTG AATT CACTGGCC TTTTTATTTGCTGCT TERM 3266 2746764 - 2746745 - T 100 -13.6 -4.82154 | opp_overlap 2746745 2746733, overlap 2746733 AACGCATATTAAAAA GGCCAGTG AATT CACTGGCC TTTTTATTTGCTGCT Shewana3_2285 2748101 - 2746851 - | LolC/E family lipoprotein releasing system, transmembrane protein Shewana3_2286 2748859 - 2748098 - | lipoprotein releasing system, ATP-binding protein Shewana3_2287 2750123 - 2748891 - | LolC/E family lipoprotein releasing system, transmembrane protein TERM 3267 2749205 - 2749216 + g 71 -5.8 -4.36914 | overlap 2749203 GGGTTTTGAGTACCG CCAC GTCG GTGG TTTTATCCACCACCA TERM 3268 2750037 - 2750024 - G 85 -3.8 -5.42259 | CCACCCCTAAAAAAA TGCC CGAAAC GGCA AATAAGGTAATAAAA TERM 3269 2750069 - 2750056 - G 71 -5.3 -4.45817 | opp_overlap 2750056, overlap 2750053 AAGGTAATAAAAGAA GCAAA GGCG TTTGC TTTTCTGGCCCGCCA Shewana3_2288 2750218 - 2750838 + | hypothetical protein TERM 3270 2753195 - 2753183 - g 82 -10.5 -3.86208 | opp_overlap 2753187 AAAAGAGAAAATCAA GGCGC TGC GCGCC AACGTAGATATTTTG Shewana3_2289 2750925 - 2754407 + | transcription-repair coupling factor Shewana3_2290 2754407 - 2755432 + | hypothetical protein TERM 3271 2755445 - 2755498 + T 100 -7.7 -5.8187 | gap 1, opp_overlap 2755461, overlap 2755450 2755461 TAAAACCCATTAGCC CTAATCGAATAAAAAAGCGGTCATGC AAT GCAT-ACCGCTTTTTTATTGCCTAAG TTTTTTTATTGCCTA TERM 3272 2755450 - 2755494 + T 76 -10.4 -3.04947 | opp_overlap 2755461, overlap 2755445 2755461 CCCATTAGCCCTAAT CG-AATAAAAAAGCGGTCATGC AAT GCAT-ACCGCTTTTTTATTGCC TAAGTTTTTTTATTG TERM 3273 2755461 - 2755482 + T 100 -9.5 -5.4833 | gap 1, opp_overlap 2755461, overlap 2755450 2755445 TAATCGAATAAAAAA GCGGTCATGC AAT GCAT-ACCGC TTTTTTATTGCCTAA TERM 3274 2755482 - 2755461 - T 100 -9.5 -5.5074 | gap 1, opp_overlap 2755461 2755450 2755445 TAATCGAATAAAAAA GCGGTCATGC AAT GCAT-ACCGC TTTTTTATTGCCTAA Shewana3_2291 2755832 - 2755560 - | acylphosphatase TERM 3275 2756043 - 2756019 - R 100 -8 -5.71983 | gap 1, opp_overlap 2756021, overlap 2756026 GCAAGTATAAAAAAA CAGCTAACGAG ACCG CT-GTTAGCTG TGTCGGGCGACATAC Shewana3_2292 2756968 - 2756429 - | hypothetical protein Shewana3_2293 2758078 - 2757050 - | beta-hexosaminidase Shewana3_2294 2758183 - 2758470 + | hypothetical protein TERM 3276 2759811 - 2759799 - g 70 -4.7 -4.73432 | overlap 2759795 2759801 GTAAATACAAAGAAA CCGCC AAA GGTGG CCTCGCGGTGAACAT Shewana3_2295 2758463 - 2759839 + | L-serine ammonia-lyase TERM 3277 2759877 - 2759927 + T 90 -10.7 -4.03234 | gap 1, opp_overlap 2759876, overlap 2759880 2759882 TTACCGATTTAACAC TGTCATGCCGCGCTTAACCGTT CAAACCGA AACGATTAAGCGCGGCAT-ATG TTTATCTGAAAACGC TERM 3278 2759880 - 2759925 + T 100 -14.9 -3.61232 | opp_overlap 2759876, overlap 2759877 2759882 CCGATTTAACACTGT CATGCCGCGCTTAACCGTT CAAACCGA AACGATTAAGCGCGGCATA TGTTTATCTGAAAAC TERM 3279 2759882 - 2759923 + T 100 -17.5 -3.38294 | opp_overlap 2759876, overlap 2759880 2759877 GATTTAACACTGTCA TGCCGCGCTTAACCGTT CAAACCGA AACGATTAAGCGCGGCA TATGTTTATCTGAAA Shewana3_2296 2760688 - 2759951 - | hypothetical protein TERM 3280 2761034 - 2760993 - H 86 -11.7 -3.30007 | opp_overlap 2760999 2761006, overlap 2760996 2761006 AACAGCGGTTGATAA CGACCATAAAAAAGCCCTC GTTT GAGGGCTTTTTTATTGATG ATGACCCGTCCTAAA TERM 3281 2761031 - 2760996 - H 100 -16.4 -2.82742 | opp_overlap 2760999 2761006, overlap 2760993 2761006 AGCGGTTGATAACGA CCATAAAAAAGCCCTC GTTT GAGGGCTTTTTTATTG ATGATGACCCGTCCT TERM 3282 2760999 - 2761028 + H 100 -16.7 -3.21218 | opp_overlap 2760996 2760993 2761006, overlap 2761006 GGTTGATAACGACCA TAAAAAAGCCCTC GTTT GAGGGCTTTTTTA TTGATGATGACCCGT TERM 3283 2761021 - 2761006 - H 100 -10.4 -5.33785 | opp_overlap 2761006 2760999, overlap 2760996 2760993 AACGACCATAAAAAA GCCCTC GTTT GAGGGC TTTTTTATTGATGAT TERM 3284 2761006 - 2761021 + H 100 -10.4 -5.52023 | opp_overlap 2760996 2760993 2761006, overlap 2760999 AACGACCATAAAAAA GCCCTC GTTT GAGGGC TTTTTTATTGATGAT Shewana3_2297 2761088 - 2761480 + | ISPsy11, transposase OrfA TERM 3285 2761489 - 2761472 - f 87 -4.9 -5.4505 | gap 1, overlap 2761473 2761474 CGCTCCAAGAAAAAA CGGCCATA GGT TATGGC-G TCACCCAATGCTGTC TERM 3286 2761818 - 2761852 + G 74 -11.5 -3.17797 | opp_overlap 2761813 2761823, overlap 2761820 TGAGCAGCAAGTGGA CATCAGCCGCTCAGA ACAAG TCTGGGTGGCTGATA TTACCTATCTGTCAC TERM 3287 2761820 - 2761850 + G 86 -14.1 -3.14839 | opp_overlap 2761813 2761823, overlap 2761818 AGCAGCAAGTGGACA TCAGCCGCTCAGA ACAAG TCTGGGTGGCTGA TATTACCTATCTGTC TERM 3288 2762303 - 2762271 - g 100 -16.5 -3.63744 | opp_overlap 2762276, overlap 2762276 TTTGGCCTTAAAATA CAAAACGCCCGATGA GGT TCATCGAGCGTTTTA GGTGGAAATAAGTGT TERM 3289 2762276 - 2762298 + G 95 -12 -4.18494 | opp_overlap 2762276 2762271 CCTTAAAATACAAAA CGCCCGATGA GGT TCATCGAGCG TTTTAGGTGGAAATA TERM 3290 2762298 - 2762276 - g 100 -14.2 -4.89567 | opp_overlap 2762276, overlap 2762271 CCTTAAAATACAAAA CGCCCGATGA GGT TCATCGAGCG TTTTAGGTGGAAATA Shewana3_2298 2761582 - 2762304 + | integrase catalytic subunit TERM 3291 2762390 - 2762357 - T 73 -2.5 -5.16151 | gap 1, overlap 2762358 GAAACTTAAGAAAAA TCAATTGTTCACGCCA TGC TAGCGTTA-CAATTGT TCAAGCCAAGTATCA Shewana3_2299 2763352 - 2762417 - | hypothetical protein Shewana3_2300 2763866 - 2763408 - | GCN5-related N-acetyltransferase TERM 3292 2763946 - 2763928 - R 100 -13.2 -4.77036 | opp_overlap 2763928 TCCTAGTATTAAAAA GCCAGAAC AGG GTTCTGGC TTTGGCAACAGGTTA TERM 3293 2763928 - 2763946 + r 100 -13.2 -3.53761 | opp_overlap 2763928 TCCTAGTATTAAAAA GCCAGAAC AGG GTTCTGGC TTTGGCAACAGGTTA Shewana3_2301 2766067 - 2764004 - | peptidase S9 prolyl oligopeptidase TERM 3294 2766102 - 2766081 - R 86 -11.7 -3.34517 | overlap 2766079 ATCTTTTGTTAAACA CATTCGGTA GTTG TACCGAATG AACGGTCAAAACGAT TERM 3295 2766165 - 2766200 + r 100 -10.4 -5.60993 | opp_overlap 2766167, overlap 2766167 CACTAACGAAACAAA AACGCTCAAGCAAGCC AAAA GGCATACTTGAGCGTA TTTTTTTGTGACAAA TERM 3296 2766198 - 2766167 - R 100 -15.2 -5.38326 | opp_overlap 2766167 2766165 CTAACGAAACAAAAA CGCTCAAGCAAGCC AAAA GGCATACTTGAGCG TATTTTTTTGTGACA TERM 3297 2766167 - 2766198 + r 100 -13 -4.45201 | opp_overlap 2766167, overlap 2766165 CTAACGAAACAAAAA CGCTCAAGCAAGCC AAAA GGCATACTTGAGCG TATTTTTTTGTGACA Shewana3_2302 2767874 - 2766330 - | fumarase TERM 3298 2767302 - 2767321 + g 76 -4.2 -5.00616 | gap 1 TGGAGGACACCAGCC CGC-GCCCA TGG TTGGCAGCG TTTTTTCAACCCAAG TERM 3299 2768869 - 2768854 - g 72 -8.2 -3.82499 | ACCAAACCGATTAAA GGCACG CTGC CGCGCC ATAGCGACCCGATGC Shewana3_2303 2767996 - 2769399 + | aminodeoxychorismate synthase, subunit I Shewana3_2304 2769425 - 2770012 + | NUDIX hydrolase Shewana3_2305 2770372 - 2770037 - | hypothetical protein asnC 2770524 - 2771924 + | asparaginyl-tRNA synthetase TERM 3300 2771955 - 2771968 + F 100 -9.5 -5.46657 | opp_overlap 2771955 ACACATCCTTTAAAA CGCGC CTCG GCGCG TTTTTTATTGCCCTG TERM 3301 2771968 - 2771955 - f 85 -9.5 -4.10925 | opp_overlap 2771955 ACACATCCTTTAAAA CGCGC CTCG GCGCG TTTTTTATTGCCCTG ddl 2772189 - 2773199 + | D-alanyl-alanine synthetase A TERM 3302 2773229 - 2773253 + T 90 -7.1 -5.10029 | opp_overlap 2773232, overlap 2773232 GGCTAAATAAACTGA AAAGCGCGC CTATATA GCGCGCTTC TTTTTTGAGGTTGGT TERM 3303 2773232 - 2773250 + T 100 -8.8 -4.63993 | opp_overlap 2773232, overlap 2773229 TAAATAAACTGAAAA GCGCGC CTATATA GCGCGC TTCTTTTTTGAGGTT TERM 3304 2773250 - 2773232 - T 95 -9.5 -4.45261 | opp_overlap 2773232 2773229 TAAATAAACTGAAAA GCGCGCC TATAT AGCGCGC TTCTTTTTTGAGGTT Shewana3_2308 2775536 - 2773278 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3305 2773339 - 2773326 - G 78 -3.8 -5.1848 | AAGTAACTCAAAAAA TGCC GCCTTG GGCA TGGGCTTATAAAAGA TERM 3306 2773510 - 2773528 + g 73 -6.1 -4.58773 | opp_overlap 2773510 CCTTCATCTAACCTA TCGATAA AACTC TTATCGA TTTTGATTTGATCGA Shewana3_2309 2776902 - 2775688 - | Fmu (Sun) domain-containing protein TERM 3307 2775747 - 2775724 - G 85 -7.4 -4.86731 | opp_overlap 2775725 2775740 TTTTGCTAAATAAAA CCCATCGAAA CCCG TTTCGGCGGG GCTGATGGTTTCATC TERM 3308 2777031 - 2777014 - R 100 -11.3 -5.4756 | opp_overlap 2777014 AAGTCCAATAAAAAA GCGATCC ATGG GGATCGC TTTTCTCGCATCGGC TERM 3309 2777014 - 2777031 + r 100 -11.3 -4.4009 | opp_overlap 2777014 AAGTCCAATAAAAAA GCGATCC ATGG GGATCGC TTTTCTCGCATCGGC Shewana3_2310 2778326 - 2777055 - | glucose/galactose transporter TERM 3310 2778421 - 2778396 - R 81 -11.3 -2.82516 | gap 1, opp_overlap 2778388 TTTCGTACTACGACA GGCAGCCACAAT GAA ATTGTG-CTGCC CATCCGAAGTGGTGT Shewana3_2311 2780074 - 2778452 - | alpha amylase, catalytic region TERM 3311 2779398 - 2779408 + g 74 -8.2 -4.08578 | TCTTCACTGAATCCG CGCC CTT GGCG TTTATCCTTGGGTTT TERM 3312 2781385 - 2781371 - g 76 -3.4 -5.10208 | GAACTGCAACAAAAA GGCGGC GAC GACACC CGTGATGGCTATATG TERM 3313 2781533 - 2781514 - g 70 -4.2 -4.72386 | opp_overlap 2781514 2781515, overlap 2781504 2781515 GAAATCATTGAAAAA TGGCACCA TCAG TGATGCCG TTGTCGAAAATGGTT Shewana3_2312 2780573 - 2783398 + | 1-(5-phosphoribosyl)-5- TERM 3314 2783409 - 2783441 + F 100 -12.9 -4.60487 | opp_overlap 2783414, overlap 2783414 TGTAAGCTGTCATCG TAAAAGCCTGTTTCA CTG TGAAGCAGGCTTTTC TTTTTACCCATAATA TERM 3315 2783436 - 2783414 - f 91 -10.6 -4.13767 | opp_overlap 2783414 2783409 GCTGTCATCGTAAAA GCCTGTTTCA CTG TGAAGCAGGC TTTTCTTTTTACCCA TERM 3316 2783414 - 2783436 + F 100 -12.8 -5.26119 | opp_overlap 2783414, overlap 2783409 GCTGTCATCGTAAAA GCCTGTTTCA CTG TGAAGCAGGC TTTTCTTTTTACCCA Shewana3_2313 2783465 - 2785525 + | alpha amylase, catalytic region TERM 3317 2785591 - 2785565 - f 95 -13.1 -3.08996 | gap 1 CATGCTTAGCTAACA GCGCGGCCAAAC CATA GTTTGGCCGC-C AAGTCAGTAAAGGAA Shewana3_2314 2785613 - 2787742 + | alpha amylase, catalytic region TERM 3318 2787776 - 2787805 + F 100 -10.8 -5.00616 | opp_overlap 2787774 2787782, overlap 2787777 AGATCAGAGATCAGC ACCAGAGTCACA CACCGT TGTGACTCTGGC TTTTTTAAAACACAC TERM 3319 2787777 - 2787804 + F 100 -14.3 -3.60048 | opp_overlap 2787774 2787782, overlap 2787776 GATCAGAGATCAGCA CCAGAGTCACA CACCGT TGTGACTCTGG CTTTTTTAAAACACA Shewana3_2315 2787858 - 2788286 + | glyoxalase/bleomycin resistance protein/dioxygenase Shewana3_2316 2788359 - 2788658 + | hypothetical protein TERM 3320 2789671 - 2789645 - T 75 -8.7 -3.63837 | gap 1, opp_overlap 2789658 2789659, overlap 2789634 ATAACGCCCCAATAA CCGG-CGCGC GGCTTTTT GCGCGTCCGG CGCCGTAGGCGCGAA Shewana3_2317 2790071 - 2789700 - | hypothetical protein TERM 3321 2790686 - 2790675 - R 81 -7.2 -4.60487 | opp_overlap 2790675 CACCATCTGGAAAAA CGCG CATG CGCG TTTTACAACCCTATT TERM 3322 2790675 - 2790686 + r 73 -7.2 -4.09511 | opp_overlap 2790675 CACCATCTGGAAAAA CGCG CATG CGCG TTTTACAACCCTATT Shewana3_2318 2791942 - 2791094 - | hypothetical protein TERM 3323 2792111 - 2792086 - R 100 -16.3 -4.07535 | opp_overlap 2792090, overlap 2792090 AATGCTTAGAAACAA CAAAGCCGCAT CGGA ATGCGGCTTTG GCTTAGATGATTAAA TERM 3324 2792090 - 2792107 + r 95 -11.3 -3.77219 | opp_overlap 2792086 2792090 CTTAGAAACAACAAA GCCGCAT CGGA ATGCGGC TTTGGCTTAGATGAT TERM 3325 2792107 - 2792090 - R 100 -11.3 -4.63048 | opp_overlap 2792090, overlap 2792086 CTTAGAAACAACAAA GCCGCAT CGGA ATGCGGC TTTGGCTTAGATGAT def 2792644 - 2792153 - | peptide deformylase Shewana3_2320 2792837 - 2793295 + | methylated-DNA-(protein)-cysteine S-methyltransferase TERM 3326 2793574 - 2793590 + G 86 -12.3 -3.9534 | opp_overlap 2793570 CAAGTATCAACTGCC CGCCATC GAG GATGGCG TTTATAAATATCGCT TERM 3327 2794224 - 2794205 - g 84 -10.8 -4.04318 | opp_overlap 2794205 CCGACAGAGCAGAAA GTGCCTAA GCTT TTAGGCAC AGGCGCTAATTAAGC Shewana3_2321 2793425 - 2794237 + | hypothetical protein TERM 3328 2794356 - 2794315 - T 100 -18.3 -4.95758 | gap 1, opp_overlap 2794317 2794322, overlap 2794317 2794322 AGCACAGCATAAAAA CACAAAAGGCCAAACGTGAG TGA CTC-CGTTTGGCCTTTTGTC TCTGATTTAATGCCA TERM 3329 2794354 - 2794317 - T 100 -20.9 -4.09649 | gap 1, opp_overlap 2794317 2794322, overlap 2794315 2794322 CACAGCATAAAAACA CAAAAGGCCAAACGTGAG TGA CTC-CGTTTGGCCTTTTG TCTCTGATTTAATGC TERM 3330 2794317 - 2794354 + T 100 -20.9 -3.07227 | gap 1, opp_overlap 2794317 2794315 2794322, overlap 2794322 CACAGCATAAAAACA CAAAAGGCCAAACGTGAG TGA CTC-CGTTTGGCCTTTTG TCTCTGATTTAATGC TERM 3331 2794349 - 2794322 - T 100 -15 -5.02287 | gap 1, opp_overlap 2794322 2794317, overlap 2794317 2794315 CATAAAAACACAAAA GGCCAAACGTGAG TGA CTC-CGTTTGGCC TTTTGTCTCTGATTT TERM 3332 2794322 - 2794349 + T 100 -15 -4.65494 | gap 1, opp_overlap 2794317 2794315 2794322, overlap 2794317 CATAAAAACACAAAA GGCCAAACGTGAG TGA CTC-CGTTTGGCC TTTTGTCTCTGATTT Shewana3_2322 2795240 - 2794401 - | glutamine amidotransferase, class-II TERM 3333 2795462 - 2795476 + G 70 -10 -3.1875 | overlap 2795460 CGCCATGATCTTAGT GCTAGG AGC CCTAGC TTACCTTCGGGTATC TERM 3334 2795930 - 2795907 - g 73 -8.9 -3.66803 | TGGCAATACCTGAAA GATCACGGC TTCTTC GCCATGATC ATCAAGAAAAAATAC fadE 2795424 - 2797871 + | acyl-CoA dehydrogenase TERM 3335 2797942 - 2797961 + T 100 -12.2 -5.79595 | opp_overlap 2797942 CTAAATAAACAAAAA GGCACTAC CTAT GTAGTGCC TTTTTTATTTTCGCC TERM 3336 2797961 - 2797942 - T 100 -12.2 -5.5454 | opp_overlap 2797942 CTAAATAAACAAAAA GGCACTAC CTAT GTAGTGCC TTTTTTATTTTCGCC Shewana3_2324 2800048 - 2798036 - | sodium/hydrogen exchanger TERM 3337 2800021 - 2800006 - G 71 -6.8 -4.23244 | GACAAAATAACGAAA GCACCC CGAT GAGTGC TAACATCCCAGTGAT TERM 3338 2800304 - 2800323 + r 100 -12.2 -4.03586 | opp_overlap 2800304 GATAGATAGAAAAAA GCCTCATC TTTC GATGAGGC TTATTCTATTTGGCG TERM 3339 2800323 - 2800304 - R 100 -12.2 -5.4492 | opp_overlap 2800304 GATAGATAGAAAAAA GCCTCATC TTTC GATGAGGC TTATTCTATTTGGCG TERM 3340 2800530 - 2800548 + r 100 -10.4 -4.58395 | AAATCCGCCTTTTTA CTGATCAA TAT TTGATCAG TTTTTGGCAACTAAA Shewana3_2325 2802219 - 2800606 - | IS4 family transposase TERM 3341 2801709 - 2801722 + g 70 -8.1 -3.70902 | TTTCACAGATAAGCT CCAGG ATAA CCTGG TTTAGCTCTGGCCGA Shewana3_2326 2803856 - 2802927 - | hypothetical protein Shewana3_2327 2803958 - 2804908 + | transcriptional regulator TERM 3342 2805161 - 2805136 - T 88 -12.7 -2.62515 | AAGTTTTGGATATTA CGAGTTAGAAC CAAA GTTCCAACTCG TAAAACATCAATAGA Shewana3_2328 2805493 - 2805218 - | hypothetical protein Shewana3_2329 2806864 - 2805626 - | major facilitator transporter Shewana3_2330 2807898 - 2806888 - | glyceraldehyde-3-phosphate dehydrogenase Shewana3_2331 2808464 - 2807973 - | protein tyrosine phosphatase, catalytic region Shewana3_2332 2808707 - 2808471 - | redox-active disulfide protein 2 Shewana3_2333 2809716 - 2808718 - | permease TERM 3343 2808765 - 2808747 - G 72 -9.6 -3.37487 | overlap 2808745 TGATAGCGTTAAATA TCCACCCT ATC AGGGTGAA TGCAATCAATAAAAT TERM 3344 2808810 - 2808789 - G 78 -5.9 -4.75063 | ATAAAATGGCAAAAA CAATGGC CAGTAAAC GCCATTG CATCACCTGTTTTAG TERM 3345 2809417 - 2809384 - G 73 -5.1 -4.7373 | overlap 2809386 TGACGTGATCAAAAA CGCCATAGTGATCCC CACA GGGATCCCCGCGGAG GTAAAACCTAAAAAT Shewana3_2334 2810319 - 2809813 - | protein tyrosine phosphatase TERM 3346 2810340 - 2810357 + r 70 -5.7 -4.30448 | opp_overlap 2810340 2810342 CCTCTGGCGACTTAA TATATGA AATT TCATATA TTTTGGATTAAATTT Shewana3_2335 2810745 - 2810398 - | ArsR family transcriptional regulator Shewana3_2336 2811154 - 2810738 - | protein tyrosine phosphatase Shewana3_2337 2811537 - 2811250 - | ArsR family transcriptional regulator TERM 3347 2812364 - 2812353 - g 76 -7.2 -4.34402 | GTTGTGATAGTAAAA CCGC CCCC GCGG TGACCTTGTGTTGCG Shewana3_2338 2811782 - 2812858 + | permease Shewana3_2339 2812988 - 2814445 + | glutathione synthase TERM 3348 2814489 - 2814468 - T 100 -10.2 -5.04601 | opp_overlap 2814468 CGTATAAAGTAAAAA GCCACAGA ATCTCA TCTGTGGC TTTCACTAACAAATT TERM 3349 2814468 - 2814489 + T 82 -10.2 -3.65199 | opp_overlap 2814468 CGTATAAAGTAAAAA GCCACAGA ATCTCA TCTGTGGC TTTCACTAACAAATT Shewana3_2340 2815220 - 2814516 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_2341 2817796 - 2815232 - | molybdopterin oxidoreductase TERM 3350 2816865 - 2816879 + g 70 -4.2 -4.62783 | ACACTGACGGTTTTA CCTGCT TTA AACAGG TTTTTACCCTCAATA Shewana3_2342 2818161 - 2818523 + | arsenical resistance operon trans-acting repressor ArsD Shewana3_2343 2818546 - 2820312 + | arsenite-activated ATPase ArsA TERM 3351 2820350 - 2820368 + F 73 -7.4 -4.14013 | overlap 2820367 TTATTTTATGGTTAT GGGCAG GCAATAG CTGCCC TTTTAGGAGGTTTTA Shewana3_2344 2820383 - 2821666 + | arsenical pump membrane protein TERM 3352 2822144 - 2822170 + G 70 -10.1 -3.29187 | ACGCCATTGGGCACT CGCCTGTGCCG CCCCT CGGAACAGGTG TTGGATATTTTACCT Shewana3_2345 2821787 - 2822263 + | arsenate reductase TERM 3353 2822309 - 2822337 + T 100 -8.9 -5.1101 | opp_overlap 2822309 CTCTAGAATCGAAAA TGCCTGCAAAACT ATC AGCTTTACAGGCA TTTTTTACCTAATGA TERM 3354 2822337 - 2822309 - T 100 -13.3 -4.3208 | opp_overlap 2822309 CTCTAGAATCGAAAA TGCCTGCAAAACT ATC AGCTTTACAGGCA TTTTTTACCTAATGA Shewana3_2346 2825451 - 2822377 - | acriflavin resistance protein TERM 3355 2822501 - 2822473 - G 82 -10.4 -3.95725 | gap 2, opp_overlap 2822497 AACGTTCAATAACAA GCCTCCGATGGCAG CAG CTGCCAT-GG-GGC GCAATAGCTCACCTC Shewana3_2347 2826572 - 2825448 - | RND family efflux transporter MFP subunit Shewana3_2348 2827315 - 2826617 - | cytochrome c biogenesis protein, transmembrane region TERM 3356 2827242 - 2827222 - G 84 -11.1 -3.89212 | TACTGATATAGGAAA TGGCCGCCA CAT TGGTGGCCA AAGGACAGGGACTTA Shewana3_2349 2827841 - 2827308 - | hypothetical protein Shewana3_2350 2828102 - 2827860 - | redox-active disulfide protein 2 Shewana3_2351 2828471 - 2828163 - | ArsR family transcriptional regulator TERM 3357 2829309 - 2829327 + G 80 -9.6 -4.07885 | opp_overlap 2829299 GAAAATGGTCGCCCA CCAGAAGG TAC TCTTCTGG TTTTAGAAACAAATA Shewana3_2352 2829036 - 2829650 + | hypothetical protein TERM 3358 2829908 - 2829898 - g 82 -4 -5.29846 | AATTTTAAAGAAAAA TAAG CAT CTTA CATCATACCCATTTG TERM 3359 2830218 - 2830199 - g 70 -2.2 -5.01811 | gap 1, overlap 2830201 CTACGAAAGGAAAAA TA-TCCTGC CCC GCAAGAGTA CGGCCTTGGCTACTT Shewana3_2353 2829650 - 2831923 + | hypothetical protein Shewana3_2354 2831908 - 2835000 + | phage integrase family protein Shewana3_2355 2835888 - 2835013 - | metal dependent phosphohydrolase Shewana3_2356 2837063 - 2835885 - | phage integrase family protein Shewana3_2357 2837285 - 2837073 - | hypothetical protein Shewana3_2358 2837441 - 2837677 + | hypothetical protein TERM 3360 2837756 - 2837718 - f 100 -22.1 -2.87931 | opp_overlap 2837718 CCGATTTCCTAGACA CCTCTTTTGGGTTAGTT AGATA AACTAACCCAAAAGAGG TGTCTAGGAACCACA TERM 3361 2837718 - 2837756 + F 100 -22.1 -2.87132 | opp_overlap 2837718 CCGATTTCCTAGACA CCTCTTTTGGGTTAGTT AGATA AACTAACCCAAAAGAGG TGTCTAGGAACCACA Shewana3_2359 2837756 - 2838001 + | transposase IS3/IS911 family protein Shewana3_2360 2838079 - 2838426 + | IS3 family transposase Shewana3_2361 2838414 - 2838917 + | integrase catalytic subunit TERM 3362 2839193 - 2839178 - g 91 -10.4 -4.51847 | opp_overlap 2839182 AAACAATCGAGAAAA CGCCAG CGCT CTGGCG CCTCGGTTTTAGACC TERM 3363 2839197 - 2839209 + G 86 -5.5 -5.24129 | AGCGCTCTGGCGCCT CGGTT TTA GACCG TTTTTTCTCGGCGGC Shewana3_2362 2839141 - 2840352 + | NnrS family protein TERM 3364 2840651 - 2840625 - g 72 -3.5 -4.82901 | opp_overlap 2840644 CGTCCTTGAGAAAAA CCCGCGCAATG TCATT CTGTGGGCGGG CTCATCCTATGCTAA TERM 3365 2840769 - 2840758 - g 79 -7.2 -4.58685 | AAAGCGGGCGAAAAA GGCC TATC GGCC AGCTGCTGGACCTGT TERM 3366 2841790 - 2841780 - g 86 -6.8 -4.95896 | AGAAATCGATAAAAA CTGG GAT CCAG TCGCCCACAGAGGTT Shewana3_2363 2840377 - 2841810 + | cytochrome c552 TERM 3367 2842088 - 2842050 - T 100 -15.5 -4.21275 | opp_overlap 2842057, overlap 2842040 2842057 GTAACTGATCTAAAA TCAAAAAGCCCATGCTA ATTAA TAGCATGGGCTTCATGA ATGTTGGCGGAGCGG TERM 3368 2842081 - 2842057 - T 100 -14.4 -5.10154 | opp_overlap 2842057, overlap 2842050 ATCTAAAATCAAAAA GCCCATGCTA ATTAA TAGCATGGGC TTCATGAATGTTGGC TERM 3369 2842057 - 2842081 + T 100 -14.4 -3.2218 | opp_overlap 2842057 2842050 ATCTAAAATCAAAAA GCCCATGCTA ATTAA TAGCATGGGC TTCATGAATGTTGGC TERM 3370 2842315 - 2842360 + T 81 -12.1 -2.56288 | gap 1, opp_overlap 2842323 2842325, overlap 2842325 TCCACTCAAGTTGCG GTGAATAATACGGTTGAGCGTT CGA AGCG-TCAACCGTTTTTTTCAC TCAATTGCATCGTTT TERM 3371 2842325 - 2842350 + T 100 -9.1 -5.47821 | gap 1, opp_overlap 2842325 2842323, overlap 2842315 TTGCGGTGAATAATA CGGTTGAGCGTT CGA AGCG-TCAACCG TTTTTTTCACTCAAT Shewana3_2364 2843652 - 2842468 - | hypothetical protein Shewana3_2365 2844739 - 2844011 - | DNA polymerase III, epsilon subunit Shewana3_2366 2844810 - 2845286 + | ribonuclease H Shewana3_2367 2846222 - 2845323 - | LysR family transcriptional regulator Shewana3_2368 2846980 - 2846246 - | methyltransferase type 11 TERM 3372 2847451 - 2847475 + G 70 -4.2 -4.63218 | opp_overlap 2847451, overlap 2847452 AGCCAATTGAGCCAA CGCTGAGTGA TTCAC TCACTCTGCC TTTTATTGACGCGCC Shewana3_2369 2847156 - 2847959 + | beta-lactamase domain-containing protein TERM 3373 2848769 - 2848756 - g 71 -5.3 -4.4648 | opp_overlap 2848756 ACCTGTATGACAAAA CCAAT AATA ATTGG CTTTATGCGATTGCA Shewana3_2370 2848212 - 2849759 + | MltD domain-containing protein TERM 3374 2849879 - 2849901 + T 100 -12.1 -5.4505 | opp_overlap 2849879 TAGGGCAAACAAAAA GGCAGTAAC ACTTG GTTACTGCC TTTTTTATTCGCAAG TERM 3375 2849901 - 2849879 - T 100 -12.1 -5.28942 | opp_overlap 2849879 TAGGGCAAACAAAAA GGCAGTAAC ACTTG GTTACTGCC TTTTTTATTCGCAAG Shewana3_2371 2850682 - 2850023 - | intracellular proteinase inhibitor domain-containing protein Shewana3_2372 2852505 - 2850685 - | AsmA protein TERM 3376 2851757 - 2851773 + g 80 -2.2 -5.45652 | ATTTGACTATTTAGA CTAACC TCTGC GGTCAG TTTTTTATTGGGGAT TERM 3377 2852348 - 2852338 - G 71 -5.4 -4.57341 | AACCGTCGGGAAAAA TGTC CAC GACA AATCATCACCGATGA Shewana3_2373 2853042 - 2852548 - | ribonuclease activity regulator protein RraA Shewana3_2374 2853262 - 2853582 + | hypothetical protein TERM 3378 2853774 - 2853744 - T 100 -17.1 -3.08679 | opp_overlap 2853748 2853751, overlap 2853746 2853748 2853751 GGCGTTTAGCGAATA GATATAAGGCGCT CTGTT AGCGCCTTATATC TGGATGATGGATTAC TERM 3379 2853772 - 2853746 - T 100 -13.9 -3.10344 | opp_overlap 2853748 2853751, overlap 2853744 2853748 2853751 CGTTTAGCGAATAGA TATAAGGCGCT CTGTT AGCGCCTTATA TCTGGATGATGGATT TERM 3380 2853770 - 2853748 - T 86 -12.1 -3.11072 | opp_overlap 2853748 2853751, overlap 2853746 2853744 2853751 TTTAGCGAATAGATA TAAGGCGCT CTGTT AGCGCCTTA TATCTGGATGATGGA TERM 3381 2853748 - 2853770 + T 86 -12.1 -2.92463 | opp_overlap 2853746 2853744 2853748 2853751, overlap 2853751 TTTAGCGAATAGATA TAAGGCGCT CTGTT AGCGCCTTA TATCTGGATGATGGA TERM 3382 2853767 - 2853751 - T 78 -9.4 -3.69364 | opp_overlap 2853748 2853751, overlap 2853748 2853746 2853744 AGCGAATAGATATAA GGCGCT CTGTT AGCGCC TTATATCTGGATGAT TERM 3383 2853751 - 2853767 + T 78 -9.4 -3.60792 | opp_overlap 2853751 2853748 2853746 2853744, overlap 2853748 AGCGAATAGATATAA GGCGCT CTGTT AGCGCC TTATATCTGGATGAT Shewana3_2375 2855576 - 2853786 - | putative lipoprotein TERM 3384 2854803 - 2854814 + g 74 -2.2 -5.16572 | gap 1, overlap 2854809 ACCAATTCTAAAGCT G-CGG GCG CCGTC TTTTTTAAGTTGGCT Shewana3_2376 2855888 - 2857363 + | DEAD/DEAH box helicase domain-containing protein Shewana3_2377 2857409 - 2857909 + | peptidyl-prolyl cis-trans isomerase B TERM 3385 2858610 - 2858597 - g 70 -8.1 -3.70902 | TCGGCCAGAGCTAAA CCAGG TTAT CCTGG AGCTTATCTGTGAAA Shewana3_2378 2858100 - 2859713 + | iron-containing alcohol dehydrogenase TERM 3386 2859783 - 2859812 + T 100 -11.5 -5.47159 | opp_overlap 2859783 CCCTAGATAGAAAAA GGAGCAATCAACC CAAT GGTTAGTTGCTCC TTTTTGTTTATTCAC TERM 3387 2859812 - 2859783 - T 100 -11.5 -5.03994 | opp_overlap 2859783 CCCTAGATAGAAAAA GGAGCAATCAACC CAAT GGTTAGTTGCTCC TTTTTGTTTATTCAC Shewana3_2379 2860339 - 2859881 - | hypothetical protein TERM 3388 2860362 - 2860348 - R 100 -8.5 -5.36441 | TCTTCATATAAAAAA CCCGC TTAAT GCGGG CCATTTTACACCAAT Shewana3_2380 2861379 - 2860378 - | putative transglycosylase TERM 3389 2861177 - 2861187 + g 86 -6.8 -5.03747 | overlap 2861185 2861186 TGGCTTGGCGCTGCG GCCA CAT TGGC TTTTTTAAAGCGTTT Shewana3_2381 2861682 - 2861404 - | hypothetical protein Shewana3_2382 2861806 - 2862471 + | septum site-determining protein MinC Shewana3_2383 2862499 - 2863308 + | septum site-determining protein MinD Shewana3_2384 2863311 - 2863568 + | cell division topological specificity factor MinE TERM 3390 2863580 - 2863606 + T 100 -14.5 -3.98236 | overlap 2863570 ATAAGTCGAGCGTTG GCGTCATCCTC ATCGC GGGGATGACGC TTTCTGCTGCGCTTT Shewana3_2385 2864897 - 2863731 - | ribonuclease D TERM 3391 2864888 - 2864904 + g 73 -10.8 -3.1855 | opp_overlap 2864888 TCCATAAAAACAAAA GCCGGC TCATT GCCGGC TTCAATCTTACGCGC TERM 3392 2864904 - 2864888 - G 100 -10.8 -5.35224 | opp_overlap 2864888 TCCATAAAAACAAAA GCCGGC TCATT GCCGGC TTCAATCTTACGCGC Shewana3_2386 2866585 - 2864912 - | long-chain-fatty-acid--CoA ligase TERM 3393 2865830 - 2865802 - G 73 -3.3 -4.98531 | gap 1, overlap 2865804 CTGTTAAAGCAAAAA TATGGTAA-AGC GGCAAG GCTGTTACCACA AATTCGTTGCCATCA TERM 3394 2866351 - 2866367 + g 74 -7.9 -4.24404 | GGTTCGGCATCATCA GGGCGAC ACG GTCACCC TTTTGGAGTTTCAAT Shewana3_2387 2867651 - 2866785 - | alpha/beta hydrolase fold Shewana3_2388 2868485 - 2867673 - | hypothetical protein Shewana3_2389 2869323 - 2868616 - | hypothetical protein Shewana3_2390 2869624 - 2869316 - | hypothetical protein TERM 3395 2869408 - 2869449 + g 78 -13.2 -2.62718 | gap 2, overlap 2869403 CGATAGCCCCTTGAT GACCTCGGGTGCTTTGCTCG TACT CGAGCAGGGCACC-GAG-TC TGGATTGTAGGTTTT TERM 3396 2869728 - 2869702 - R 74 -10.2 -2.68886 | opp_overlap 2869700, overlap 2869698 CTAACTAAGAATTGA TGTCTGCATCGA GAA CCCATGCAGACA ATCTAGATTCTAACG Shewana3_2391 2870477 - 2869767 - | peptidase M22, glycoprotease TERM 3397 2870409 - 2870390 - G 70 -2.8 -4.77157 | CTAACTCAGCAAAAA CCTGTCCT TGAT AATACAGG GCAGCCGAACAAGCT Shewana3_2392 2870854 - 2871852 + | delta-aminolevulinic acid dehydratase TERM 3398 2871919 - 2871890 - T 76 -10.8 -2.67166 | opp_overlap 2871895, overlap 2871895 AGGCAAGCAATTAAC GAAAACGCCACC CTAATT GGTGGCGTTTTT TATCCGTCATTTTGC TERM 3399 2871895 - 2871914 + T 100 -10.7 -5.28778 | opp_overlap 2871895 2871890 AGCAATTAACGAAAA CGCCACC CTAATT GGTGGCG TTTTTTATCCGTCAT TERM 3400 2871914 - 2871895 - T 100 -10.7 -4.50193 | opp_overlap 2871895, overlap 2871890 AGCAATTAACGAAAA CGCCACC CTAATT GGTGGCG TTTTTTATCCGTCAT Shewana3_2393 2872853 - 2871948 - | bifunctional methionine sulfoxide reductase B/A protein TERM 3401 2873577 - 2873564 - g 74 -4.5 -4.77036 | GCCTACTATGAAAAA GCCAA TGCG CTGGC CTCTGAACTGTTAGA Shewana3_2394 2873231 - 2874070 + | 2OG-Fe(II) oxygenase TERM 3402 2874123 - 2874136 + F 100 -9.5 -5.63504 | opp_overlap 2874123 GATTAAGCAATTAAA GCGCC TTCG GGCGC TTTTTTTATGACATT TERM 3403 2874136 - 2874123 - f 83 -9.5 -4.01419 | opp_overlap 2874123 GATTAAGCAATTAAA GCGCC TTCG GGCGC TTTTTTTATGACATT rbgA 2874207 - 2875148 + | ribosomal biogenesis GTPase TERM 3404 2875289 - 2875311 + T 100 -12 -5.33405 | CAGTTTGATGTATCA GCCAGCGC CATCTCA GCGCTGGC TTTTTATTTGCTCCC Shewana3_2396 2875888 - 2875448 - | hypothetical protein Shewana3_2397 2876732 - 2876175 - | hypothetical protein TERM 3405 2876697 - 2876669 - G 74 -4.6 -4.79223 | gap 1, opp_overlap 2876669 TCACATCATCAAAAA CTCTATC-CGTGC TGGA GCACATGAAAGAG TCGTTATCATTAACG TERM 3406 2876813 - 2876757 - R 100 -15.2 -3.69256 | opp_overlap 2876758, overlap 2876758 2876780 ATTTAGGGAACATAA CGCC-GCCAGCAGGGGCAGACAAAGCGC GCA GCGGTTTGGCTGTCCCT-CTGGCTGGCT TTGTTACGTGCAGAT TERM 3407 2876812 - 2876758 - R 100 -18.7 -2.81072 | opp_overlap 2876758, overlap 2876757 2876780 TTTAGGGAACATAAC GCC-GCCAGCAGGGGCAGACAAAGCGC GCA GCGGTTTGGCTGTCCCT-CTGGCTGGC TTTGTTACGTGCAGA TERM 3408 2876758 - 2876812 + r 100 -20.9 -4.20516 | opp_overlap 2876758 2876757 2876780 TTTAGGGAACATAAC GCC-GCCAGCAGGGGCAGACAAAGCGC GCA GCGGTTTGGCTGTCCCT-CTGGCTGGC TTTGTTACGTGCAGA Shewana3_2398 2877422 - 2876817 - | hypothetical protein TERM 3409 2877569 - 2877558 - R 81 -7.2 -4.60487 | opp_overlap 2877558, overlap 2877548 TACCATCTGGAAAAA CGCG CATG CGCG TTTTTCAAACCTATT TERM 3410 2877558 - 2877569 + r 81 -7.2 -4.59511 | opp_overlap 2877558 2877548 TACCATCTGGAAAAA CGCG CATG CGCG TTTTTCAAACCTATT Shewana3_2399 2878547 - 2878032 - | protein tyrosine phosphatase Shewana3_2400 2879590 - 2878568 - | hypothetical protein Shewana3_2401 2880606 - 2879692 - | DNA ligase TERM 3411 2880561 - 2880549 - G 70 -4.7 -4.7268 | AAAGACCGAAGAAAA CAGCG ACA CGCAG CACAAATGCAAATGT Shewana3_2402 2880859 - 2881230 + | diacylglycerol kinase TERM 3412 2881319 - 2881371 + T 100 -19.6 -3.65314 | gap 1, opp_overlap 2881332, overlap 2881332 TCTTAACTGATTGTT CTGC-TGTAAAAAACGCCTTTGAGA TATC TCCCAAAGGCGTTTTTTATATGCAG TTGTTACAGATTAGC TERM 3413 2881332 - 2881357 + T 100 -11.9 -5.37043 | opp_overlap 2881332, overlap 2881319 TTCTGCTGTAAAAAA CGCCTTTGAGA TATC TCCCAAAGGCG TTTTTTATATGCAGT TERM 3414 2881357 - 2881332 - T 100 -14.1 -5.00616 | opp_overlap 2881332 2881319 TTCTGCTGTAAAAAA CGCCTTTGAGA TATC TCCCAAAGGCG TTTTTTATATGCAGT Shewana3_2403 2882239 - 2881382 - | LysR family transcriptional regulator TERM 3415 2882527 - 2882513 - g 72 -10 -3.35522 | overlap 2882511 GAACTGCTTGAAATA CATGGC CAT GCCATG AAAAATCTCGACGAA Shewana3_2404 2882348 - 2882800 + | hypothetical protein TERM 3416 2883062 - 2883077 + G 70 -9 -3.55622 | overlap 2883056 CCACTTACTTTGCGT TGGCGA TCAT TCGCCA TTTAGAACGCTTAGG Shewana3_2405 2882821 - 2883837 + | alpha-L-glutamate ligase TERM 3417 2883861 - 2883886 + F 100 -19.1 -5.05782 | CCTTAAGCTCTTATC TGCGGCCCAGT CTTT ACTGGGCCGCA TTTTTTGGCCTGACT Shewana3_2406 2884077 - 2885000 + | hypothetical protein TERM 3418 2885014 - 2885045 + T 100 -11 -4.97158 | opp_overlap 2885015 2885022, overlap 2885015 2885022 AATAGATTGATAAGC ATAAAAAAGGACGC CTAG GCGTCCTTTTTTGC TTTTGTTTAATATGA TERM 3419 2885044 - 2885015 - T 89 -12.3 -2.8598 | opp_overlap 2885015 2885014 2885022, overlap 2885022 ATAGATTGATAAGCA TAAAAAAGGACGC CTAG GCGTCCTTTTTTG CTTTTGTTTAATATG TERM 3420 2885015 - 2885044 + T 100 -14.5 -3.5721 | opp_overlap 2885015 2885022, overlap 2885014 2885022 ATAGATTGATAAGCA TAAAAAAGGACGC CTAG GCGTCCTTTTTTG CTTTTGTTTAATATG TERM 3421 2885022 - 2885037 + T 100 -10.4 -5.52347 | opp_overlap 2885022 2885015, overlap 2885015 2885014 GATAAGCATAAAAAA GGACGC CTAG GCGTCC TTTTTTGCTTTTGTT TERM 3422 2885037 - 2885022 - T 100 -10.4 -5.39755 | opp_overlap 2885015 2885014 2885022, overlap 2885015 GATAAGCATAAAAAA GGACGC CTAG GCGTCC TTTTTTGCTTTTGTT Shewana3_2407 2886686 - 2885061 - | peptidase M28 TERM 3423 2885597 - 2885609 + g 75 -9.1 -3.9122 | TCGAACGCTCAAGCG GCGCA CTT TGCGC TTGTTTAGCAAAGTA Shewana3_2408 2886847 - 2887872 + | diguanylate cyclase TERM 3424 2887916 - 2887872 - T 100 -16.8 -2.80016 | gap 1, opp_overlap 2887885, overlap 2887885 GCCGATGAGCAACTA GCTCGAACAAAAAGGCAGAAC TCTG GTTCTGCCTTTTTGTTC-ATC ACGCCAGTTTTCACG TERM 3425 2887904 - 2887885 - T 100 -12.2 -5.07486 | opp_overlap 2887885, overlap 2887872 TAGCTCGAACAAAAA GGCAGAAC TCTG GTTCTGCC TTTTTGTTCATCACG TERM 3426 2887885 - 2887904 + T 100 -12.2 -5.1356 | opp_overlap 2887872 2887885 TAGCTCGAACAAAAA GGCAGAAC TCTG GTTCTGCC TTTTTGTTCATCACG Shewana3_2409 2888700 - 2888107 - | sortase family protein Shewana3_2410 2891055 - 2888800 - | vault protein inter-alpha-trypsin subunit TERM 3427 2890168 - 2890191 + g 82 -6.6 -4.75372 | opp_overlap 2890171, overlap 2890171 AGGCACGCGATTAGC CAAGGCCACC GTCA GTTGGCCCTG TTTTTCATCAATCGT Shewana3_2411 2891895 - 2891101 - | OmpA/MotB domain-containing protein TERM 3428 2892219 - 2892246 + G 80 -10.6 -3.74251 | gap 1, opp_overlap 2892215 2892219, overlap 2892220 CAGTGTGCAAACCTA TGCCGACA-GGCC ATC GGCCATGTTGGCG TTTAATACCCGTCTG TERM 3429 2892220 - 2892245 + G 74 -11.9 -2.84229 | gap 1, opp_overlap 2892215 2892219, overlap 2892219 AGTGTGCAAACCTAT GCCGACA-GGCC ATC GGCCATGTTGGC GTTTAATACCCGTCT Shewana3_2412 2892127 - 2892819 + | two component transcriptional regulator TERM 3430 2894109 - 2894071 - g 74 -7.5 -4.15044 | opp_overlap 2894053, overlap 2894074 TGGTGGCCGAAGAAA CCA-CCCACGGTATTCGCA CCC TGCGTA-ACCGTGCGCTGG AAAAACTGTTTAACG TERM 3431 2894548 - 2894512 - g 77 -11.5 -3.39784 | overlap 2894510 2894539 TGATTTTGAACAATA TGAGTGAGGCAACGCGC CTC GAGCAGAGCCTCACTCA GGCCGATGTGGCTAA TERM 3432 2894906 - 2894882 - g 74 -11.5 -3.11178 | opp_overlap 2894882 2894886, overlap 2894875 2894886 CAATCAAGCCCAAGA CAAACCTCACC TCG GGTTAGGTTTG TATATTGCGAGGCTC TERM 3433 2894882 - 2894906 + G 74 -11.5 -3.07013 | opp_overlap 2894875 2894882 2894886, overlap 2894886 CAATCAAGCCCAAGA CAAACCTCACC TCG GGTTAGGTTTG TATATTGCGAGGCTC TERM 3434 2894902 - 2894886 - g 71 -6.5 -4.21439 | opp_overlap 2894886 2894882, overlap 2894875 2894882 CAAGCCCAAGACAAA CCTCACC TCG GGTTAGG TTTGTATATTGCGAG TERM 3435 2894886 - 2894902 + G 71 -6.5 -4.2074 | opp_overlap 2894875 2894882 2894886, overlap 2894882 CAAGCCCAAGACAAA CCTCACC TCG GGTTAGG TTTGTATATTGCGAG Shewana3_2413 2892852 - 2895011 + | ATPase domain-containing protein TERM 3436 2895400 - 2895416 + G 71 -5 -4.46576 | TATCCCTCGGGTGCG GCAGCG ATTAG CGCGGC TTTGTTATCGTTTTT TERM 3437 2895829 - 2895842 + G 76 -8.1 -4.20367 | opp_overlap 2895816 AAGCACTGGCCGCAG CTGCG TGAG CGCAG TTATTTATTGGGGCA TERM 3438 2896106 - 2896096 - g 70 -8.2 -3.73534 | opp_overlap 2896098 CAAGGGGATCAAGAA GCGG TCA CCGC CCTCGTTGAAAATAT Shewana3_2414 2895136 - 2896335 + | cystathionine beta-lyase TERM 3439 2896388 - 2896363 - T 86 -9.7 -3.95378 | opp_overlap 2896367, overlap 2896367 TTATATGTTAAACAA CGAAGGCGGGA ACTC TCCCGCCTTTA TTTTGCCCCGCCTTC TERM 3440 2896384 - 2896367 - T 100 -12.7 -3.62054 | opp_overlap 2896367, overlap 2896363 ATGTTAAACAACGAA GGCGGGA ACTC TCCCGCC TTTATTTTGCCCCGC TERM 3441 2896367 - 2896384 + T 100 -12.7 -4.64861 | opp_overlap 2896367 2896363 ATGTTAAACAACGAA GGCGGGA ACTC TCCCGCC TTTATTTTGCCCCGC Shewana3_2415 2896963 - 2896448 - | CreA family protein Shewana3_2416 2898427 - 2896973 - | putative chaperone TERM 3442 2897282 - 2897305 + g 71 -10.4 -3.06796 | gap 1, overlap 2897284 TTCAAAGCCCGTGCG GC-TCACTTCG GCC CGAAGTGATGC TTCAATAAAGTCCAG TERM 3443 2897284 - 2897302 + g 74 -11.8 -2.75382 | overlap 2897282 CAAAGCCCGTGCGGC TCACTTCG GCC CGAAGTGA TGCTTCAATAAAGTC TERM 3444 2898223 - 2898233 + g 70 -8.2 -3.66018 | opp_overlap 2898207, overlap 2898222 GGGCGCGGCTCAATT GCGC GGC GCGC TTCTTGGCATAATCC TERM 3445 2899705 - 2899726 + G 82 -11.5 -3.72576 | opp_overlap 2899704 2899703 CGAAAACGAGAAATT GCCCGCGCT CAAT AGCTCGGGC TTTGGTCGCAGCGCC Shewana3_2417 2898752 - 2900914 + | polyphosphate kinase TERM 3446 2900906 - 2900921 + F 89 -10.4 -4.00782 | opp_overlap 2900906 GAATTACAGGCCAAA GCCAGC TAAC GCTGGC TTTATCATCGTCTCG TERM 3447 2900921 - 2900906 - f 82 -10.4 -3.65313 | opp_overlap 2900906 GAATTACAGGCCAAA GCCAGC TAAC GCTGGC TTTATCATCGTCTCG Shewana3_2418 2900957 - 2902513 + | Ppx/GppA phosphatase Shewana3_2419 2903468 - 2902599 - | Ion transport protein Shewana3_2420 2903581 - 2904141 + | hypothetical protein TERM 3448 2904174 - 2904191 + F 100 -8.4 -5.38054 | opp_overlap 2904174 CCCTATGCGACTCAA CGCCCA GTCAAA TGGGCG TTTTTGTTTGTACCC Shewana3_2421 2904223 - 2904831 + | hypothetical protein TERM 3449 2905020 - 2905046 + F 70 -7.3 -3.78934 | gap 1, opp_overlap 2905020 2905022, overlap 2905023 TTTTGTGTTATCGAA CACGGGAATGCC AGCA GGC-TTCCCCTG TTATTATAAGGACGC Shewana3_2422 2905067 - 2905327 + | hypothetical protein TERM 3450 2905369 - 2905344 - T 100 -10.3 -4.5442 | overlap 2905346 CGCTCAAGCATAAAA CAGGGCGCCAA TGAT TAGGCGCCCAG TTAGGAGATAAGAGA TERM 3451 2905367 - 2905346 - T 95 -11.5 -3.8823 | overlap 2905344 CTCAAGCATAAAACA GGGCGCCAA TGAT TAGGCGCCC AGTTAGGAGATAAGA TERM 3452 2905399 - 2905420 + T 81 -7.3 -4.72486 | gap 1, opp_overlap 2905387 2905399 2905397, overlap 2905415 ATAGACTAAGAGATA GTCGCGGGAG TTA CTTC-GCGAC TTTTTGCGCTTTCTG Shewana3_2423 2906329 - 2905409 - | peptidase M23B TERM 3453 2905991 - 2906011 + g 70 -8.3 -3.78409 | overlap 2905992 CTGAATATTGTATTC ACGCTTAGT GAC ACTAAGCGG TTTGACTTCGGTTAA TERM 3454 2905992 - 2906010 + g 74 -11.8 -2.86564 | overlap 2905991 TGAATATTGTATTCA CGCTTAGT GAC ACTAAGCG GTTTGACTTCGGTTA TERM 3455 2906380 - 2906356 - R 100 -15.9 -3.96216 | opp_overlap 2906359, overlap 2906359 TCCTTATTCAAACAA TAACGCCCTAA AGA TTAGGGCGTTA TAAAAAATCGACGGG TERM 3456 2906377 - 2906359 - R 100 -13.2 -4.10744 | opp_overlap 2906359, overlap 2906356 TTATTCAAACAATAA CGCCCTAA AGA TTAGGGCG TTATAAAAAATCGAC TERM 3457 2906359 - 2906377 + r 100 -13.2 -3.30124 | opp_overlap 2906359 2906356 TTATTCAAACAATAA CGCCCTAA AGA TTAGGGCG TTATAAAAAATCGAC Shewana3_2424 2907271 - 2906396 - | isocitrate dehydrogenase (NADP(+)) Shewana3_2425 2907852 - 2908853 + | di-haem cytochrome c peroxidase TERM 3458 2908903 - 2908924 + T 100 -15.9 -5.34309 | opp_overlap 2908903 CGCGCAAAAGAGAAA GGCCGAGGA TTCA TCCTCGGCC TTTTTGTTTAATGCT TERM 3459 2908924 - 2908903 - T 100 -15.9 -4.45168 | opp_overlap 2908903 CGCGCAAAAGAGAAA GGCCGAGGA TTCA TCCTCGGCC TTTTTGTTTAATGCT Shewana3_2426 2910020 - 2908992 - | nucleoid-associated protein NdpA Shewana3_2427 2910098 - 2910316 + | hypothetical protein TERM 3460 2910436 - 2910400 - g 78 -3.7 -5.08824 | overlap 2910405 GGTCGAGCGAAAAAA GCAAATGAGCCGCGA TCGCGTG TCACGACTCATCAAC TGGGGACATTGGTTC TERM 3461 2910431 - 2910405 - g 76 -6.6 -4.43669 | overlap 2910400 AGCGAAAAAAGCAAA TGAGCCGCGA TCGCGTG TCACGACTCA TCAACTGGGGACATT Shewana3_2428 2910383 - 2912173 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 3462 2912263 - 2912294 + T 90 -11.7 -3.6502 | opp_overlap 2912263 2912269, overlap 2912269 AAAATAAACAATAAA CAAAAAGCCCCAC TTCATC GTGGGGCTTTTTA TTTGGCTAAGAACTA TERM 3463 2912294 - 2912263 - T 100 -13.9 -4.73617 | opp_overlap 2912263 2912269, overlap 2912269 AAAATAAACAATAAA CAAAAAGCCCCAC TTCATC GTGGGGCTTTTTA TTTGGCTAAGAACTA TERM 3464 2912288 - 2912269 - T 100 -10.7 -5.52807 | opp_overlap 2912269 2912263, overlap 2912263 AACAATAAACAAAAA GCCCCAC TTCATC GTGGGGC TTTTTATTTGGCTAA TERM 3465 2912269 - 2912288 + T 100 -10.7 -5.30616 | opp_overlap 2912263 2912269, overlap 2912263 AACAATAAACAAAAA GCCCCAC TTCATC GTGGGGC TTTTTATTTGGCTAA Shewana3_2429 2913424 - 2912312 - | NADH:flavin oxidoreductase/NADH oxidase Shewana3_2430 2913525 - 2914391 + | LysR family transcriptional regulator TERM 3466 2914642 - 2914681 + G 71 -6.6 -4.1897 | gap 1, opp_overlap 2914645, overlap 2914645 GATACCAACCATAGT CAAGC-CATTGATACTATT TTA AATAGTCTCGATGCGCTGG TTTATGTCTCTGATT Shewana3_2431 2914549 - 2915538 + | diguanylate cyclase Shewana3_2432 2915813 - 2915562 - | hypothetical protein Shewana3_2433 2916238 - 2916957 + | hypothetical protein TERM 3467 2917802 - 2917792 - g 95 -5.4 -5.65177 | ACATGGATAAAAAAA TGTG GTT CACA ACTATTAAAGGATTT TERM 3468 2918054 - 2918035 - g 91 -5 -5.41143 | TATTGTTCAAAAAAA CATACTCC GATA GGATTATG AAAATGATTATGGAA Shewana3_2434 2917779 - 2918522 + | hypothetical protein TERM 3469 2919036 - 2918997 - f 72 -9.5 -3.08344 | gap 1, opp_overlap 2918997 2919004, overlap 2919004 TGCAAATCACAGACA CAAAAAAGCCCGCAA-CT GATTA AGATTGCAGGCTTTATTG TTTATGAATTTGGTC TERM 3470 2918997 - 2919036 + F 72 -7.3 -4.03204 | gap 1, opp_overlap 2918997 2919004, overlap 2919004 TGCAAATCACAGACA CAAAAAAGCCCGCAA-CT GATTA AGATTGCAGGCTTTATTG TTTATGAATTTGGTC TERM 3471 2919029 - 2919004 - f 91 -6.2 -5.4492 | gap 1, opp_overlap 2919004 2918997, overlap 2918997 CACAGACACAAAAAA GCCCGCAA-CT GATTA AGATTGCAGGC TTTATTGTTTATGAA Shewana3_2435 2919485 - 2921665 + | diguanylate cyclase Shewana3_2436 2923128 - 2921662 - | hypothetical protein Shewana3_2437 2923293 - 2923814 + | hypothetical protein TERM 3472 2923923 - 2923952 + T 100 -15.9 -3.58726 | opp_overlap 2923923 2923930, overlap 2923924 2923930 TTAAGCATTCACACA TGAAAAAGCACCC ACTA GGGTGCTTTTTCG TTATGTCTCAGACGG TERM 3473 2923952 - 2923923 - T 100 -13.7 -2.93435 | opp_overlap 2923923 2923924 2923930, overlap 2923930 TTAAGCATTCACACA TGAAAAAGCACCC ACTA GGGTGCTTTTTCG TTATGTCTCAGACGG TERM 3474 2923924 - 2923951 + T 100 -17.2 -2.75022 | opp_overlap 2923923 2923930, overlap 2923923 2923930 TAAGCATTCACACAT GAAAAAGCACCC ACTA GGGTGCTTTTTC GTTATGTCTCAGACG TERM 3475 2923930 - 2923945 + T 100 -10.4 -4.9755 | opp_overlap 2923930 2923923, overlap 2923924 2923923 TTCACACATGAAAAA GCACCC ACTA GGGTGC TTTTTCGTTATGTCT TERM 3476 2923945 - 2923930 - T 100 -10.4 -4.84527 | opp_overlap 2923924 2923923 2923930, overlap 2923923 TTCACACATGAAAAA GCACCC ACTA GGGTGC TTTTTCGTTATGTCT nadE 2924871 - 2923981 - | NAD synthetase TERM 3477 2924535 - 2924553 + g 74 -4.5 -4.82855 | overlap 2924531 2924537 TAAATTGGCAAGCTT GCTGAGC TTCGT GCTCATC TTTTTGAATTTGATA TERM 3478 2924745 - 2924734 - G 74 -7.2 -4.23213 | TTTAGATTTAATAAA CGCC ACAC GGCG CTGCACTTCGAACTC TERM 3479 2925003 - 2924964 - R 100 -15.2 -5.00616 | opp_overlap 2924970, overlap 2924967 GTCTGTTCCAAAAAA CAACAAGGGCAATAACGG TTTG CCGCTATTGCCCTTATTT ACTCAAGCCAGTACT TERM 3480 2925000 - 2924967 - R 100 -16.9 -4.61482 | opp_overlap 2924970, overlap 2924964 TGTTCCAAAAAACAA CAAGGGCAATAACGG TTTG CCGCTATTGCCCTTA TTTACTCAAGCCAGT TERM 3481 2924970 - 2924997 + r 100 -14.2 -4.00042 | opp_overlap 2924967 2924964 TCCAAAAAACAACAA GGGCAATAACGG TTTG CCGCTATTGCCC TTATTTACTCAAGCC Shewana3_2439 2926326 - 2925022 - | inosine-guanosine kinase TERM 3482 2925262 - 2925238 - G 77 -10.7 -3.64283 | opp_overlap 2925258, overlap 2925248 CAAATCGTGCAATAA CGCCGATAACG CAC CATCACCGGCG CCGTTAGTGTTGCCG Shewana3_2440 2927562 - 2926516 - | ferrochelatase TERM 3483 2927389 - 2927373 - G 77 -8.7 -4.08216 | TTATCCCTTGCAAAA TCGGCTG CCA CAGCCAA GGGGACAAATCGACG TERM 3484 2927582 - 2927597 + r 100 -10.4 -4.79223 | opp_overlap 2927582 TCGCCAATAAAAAAA GCCTGC AATA GCAGGC TTTTTCCTAATATGA TERM 3485 2927597 - 2927582 - R 100 -10.4 -5.7946 | opp_overlap 2927582 TCGCCAATAAAAAAA GCCTGC AATA GCAGGC TTTTTCCTAATATGA Shewana3_2441 2928286 - 2927642 - | adenylate kinase Shewana3_2442 2929291 - 2928428 - | thioredoxin domain-containing protein TERM 3486 2929406 - 2929365 - R 72 -7.4 -4.07568 | gap 2, opp_overlap 2929366 2929367 2929369 2929370, overlap 2929370 TTGCGGTGCCTAAAA CGGAATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAAT--G TCTTACTTCAGGTTC TERM 3487 2929366 - 2929408 + r 89 -12.1 -3.37612 | gap 1, opp_overlap 2929365 2929370, overlap 2929367 2929369 2929370 TGCGGTGCCTAAAAC GG-AATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAATGTC TTACTTCAGGTTCGC TERM 3488 2929367 - 2929406 + r 100 -13.6 -3.25539 | opp_overlap 2929365 2929370, overlap 2929366 2929369 2929370 GCGGTGCCTAAAACG GAATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAATG TCTTACTTCAGGTTC TERM 3489 2929369 - 2929404 + r 100 -16.2 -3.18634 | opp_overlap 2929365 2929370, overlap 2929367 2929366 2929370 GGTGCCTAAAACGGA ATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAA TGTCTTACTTCAGGT TERM 3490 2929370 - 2929403 + r 100 -19.7 -2.50699 | opp_overlap 2929370 2929365, overlap 2929369 2929367 2929366 GTGCCTAAAACGGAA TCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGA ATGTCTTACTTCAGG TERM 3491 2929403 - 2929370 - R 100 -19.7 -3.36823 | opp_overlap 2929369 2929367 2929366 2929370, overlap 2929365 GTGCCTAAAACGGAA TCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGA ATGTCTTACTTCAGG Shewana3_2443 2931322 - 2929409 - | heat shock protein 90 TERM 3492 2929980 - 2929998 + g 71 -11 -2.83255 | CTGTTGGCCGCGGCT TCGTGGCT GTC GGCCACGA TATAGTAAATCTTGT TERM 3493 2930622 - 2930646 + g 86 -7.1 -5.04385 | overlap 2930624 GCCTTGTTCATGACT TTCCAGTAACC TTC GGTTGCGGGGA TTTTTTCACCGTCTG TERM 3494 2931589 - 2931621 + r 77 -10.6 -3.09878 | opp_overlap 2931594, overlap 2931594 CTGCGCCCATAAAAT AAAAACCCGCGAGC ACTGG GCTGGCGGGTTTTA TCTTGAGTCCATCAC TERM 3495 2931594 - 2931616 + r 100 -10.5 -4.68724 | opp_overlap 2931594, overlap 2931589 CCCATAAAATAAAAA CCCGCGAGC ACTGG GCTGGCGGG TTTTATCTTGAGTCC TERM 3496 2931616 - 2931594 - R 100 -10.5 -5.54907 | opp_overlap 2931594 2931589 CCCATAAAATAAAAA CCCGCGAGC ACTGG GCTGGCGGG TTTTATCTTGAGTCC Shewana3_2444 2932239 - 2931640 - | DNA replication and repair protein RecR TERM 3497 2932190 - 2932153 - G 82 -10.5 -3.81027 | overlap 2932154 CTCAAGCAATTGAAA CGCCATACGTTGAGCCG ATTT CGGCCCAACCCCTGGCA AACAGCGCAGGGACT TERM 3498 2932189 - 2932154 - G 76 -11.8 -2.88134 | overlap 2932153 TCAAGCAATTGAAAC GCCATACGTTGAGCCG ATTT CGGCCCAACCCCTGGC AAACAGCGCAGGGAC Shewana3_2445 2932587 - 2932252 - | hypothetical protein TERM 3499 2932304 - 2932314 + g 91 -6.8 -5.17786 | overlap 2932291 2932294 CCGCCGGTCACTTCG GCCA TTT TGGC TTTTTGGTTTTCTTC Shewana3_2446 2935873 - 2932751 - | DNA polymerase III, subunits gamma and tau TERM 3500 2934641 - 2934657 + g 100 -3.6 -6.06723 | AGTCTGTGAGTCACG CTCAGC GGTTA GCGGAG TTTTTTTTTCAGCCA TERM 3501 2935929 - 2935916 - R 81 -5.2 -5.24129 | opp_overlap 2935921 TGTTGGTACAAAAAA GGGG ATCGCG CCCC GAGATAGTTGCAAGA Shewana3_2447 2936554 - 2936003 - | adenine phosphoribosyltransferase TERM 3502 2936628 - 2936608 - R 100 -11.2 -5.26119 | opp_overlap 2936606 GCGGTAAAAACAAAA CGTCCACA GCGAG TGTGGACG AGCTTTAATAATTCG Shewana3_2448 2937394 - 2937026 - | hypothetical protein TERM 3503 2937175 - 2937191 + g 77 -11.5 -3.42069 | overlap 2937174 CTCGGCGTTTAAGGC CGGGGCG CAT CGCCCTG TGTTGTTGCCATTGG TERM 3504 2937480 - 2937464 - R 100 -12.3 -5.43553 | ACCTAAAAAACAAAA GCCACTC TAA GAGTGGC CAGTAGTATACTCAA Shewana3_2449 2938533 - 2937793 - | hypothetical protein TERM 3505 2938040 - 2938021 - G 95 -6.4 -5.51402 | gap 1, opp_overlap 2938021 2938026 ATAGAGGCAAAAAAA CACCGGCTG CGG CAGC-GGCG TTGTGGGGCGATAAT TERM 3506 2938347 - 2938334 - G 78 -3.8 -5.08824 | TGTTGACTGAAAAAA GCCT GCACTA AGGC TTGCCACTGTGAATC Shewana3_2450 2939372 - 2938533 - | hypothetical protein TERM 3507 2939480 - 2939463 - R 100 -12.7 -4.48902 | overlap 2939451 ATACAGCTAAACAAA GGCCAGC TGAG GCTGGCC AAGTGTAGAATTGAG Shewana3_2451 2939948 - 2939517 - | hypothetical protein Shewana3_2452 2940208 - 2941155 + | dihydrouridine synthase, DuS Shewana3_2453 2941319 - 2941678 + | TraR/DksA family transcriptional regulator TERM 3508 2941744 - 2941725 - T 100 -12.2 -5.1356 | opp_overlap 2941725 GTTCATCAATAAAAA TGCCACTC AAAT GAGTGGCA TTTTTTTACGATAAT TERM 3509 2941725 - 2941744 + T 100 -12.2 -5.44721 | opp_overlap 2941725 GTTCATCAATAAAAA TGCCACTC AAAT GAGTGGCA TTTTTTTACGATAAT ushA 2943494 - 2941773 - | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 3510 2943801 - 2943835 + r 78 -5.8 -4.86033 | opp_overlap 2943801 GTTCTGAATAAAAAA CATCAAACGGTAAA AACACAC TTTACCGCATGATG TTTTTATCAGCATTT TERM 3511 2943835 - 2943801 - R 100 -8.7 -5.4505 | opp_overlap 2943801 GTTCTGAATAAAAAA CATCAAACGGTAAAA ACACA CTTTACCGCATGATG TTTTTATCAGCATTT Shewana3_2455 2944524 - 2943859 - | phospholipase/carboxylesterase Shewana3_2456 2944846 - 2944577 - | hypothetical protein Shewana3_2457 2945191 - 2947119 + | peptidase M1, membrane alanine aminopeptidase TERM 3512 2947286 - 2947305 + T 100 -12.2 -5.98781 | opp_overlap 2947286 ATTAGCGCACAAAAA GCCCAAAC CTAG GTTTGGGC TTTTTTTTACTTATC TERM 3513 2947305 - 2947286 - T 100 -12.2 -4.86001 | opp_overlap 2947286 ATTAGCGCACAAAAA GCCCAAAC CTAG GTTTGGGC TTTTTTTTACTTATC Shewana3_2458 2947869 - 2947381 - | peptidylprolyl isomerase, FKBP-type Shewana3_2459 2949370 - 2948078 - | lytic murein transglycosylase TERM 3514 2948962 - 2948980 + g 76 -3 -5.08824 | overlap 2948964 2948965 ATTCCTGCGCCAATT TATCGAGC AGC GCGCGGTG TTTTTTCAGTAAACG TERM 3515 2949212 - 2949194 - G 70 -8.8 -3.57119 | opp_overlap 2949193 CACACAGGTCGGAAA CGCCGC AGCATGG GCGGCG ATGGTGTCACTGAGC TERM 3516 2949708 - 2949697 - H 75 -3 -5.1615 | CCAACAGCGAAAAAA TCTT AGCA AAGA ATCCCTTGGACTATC TERM 3517 2949851 - 2949828 - g 79 -8.2 -4.31549 | GAAAACGTAAAAGAA CATCAAACAC TCTG GGGTTTGATG GATGAAACTGGCGAA Shewana3_2460 2949777 - 2950136 + | hypothetical protein TERM 3518 2950161 - 2950201 + F 75 -8.3 -3.83323 | opp_overlap 2950146, overlap 2950162 CCAAAACCGCATGTT TAGGGCATCAAGGGCTGAG GTA TTTAGCTCTTGATGTCCGC TTTCCCTTGTATCGA TERM 3519 2950162 - 2950200 + F 83 -11.8 -2.89511 | opp_overlap 2950146, overlap 2950161 CAAAACCGCATGTTT AGGGCATCAAGGGCTGAG GTA TTTAGCTCTTGATGTCCG CTTTCCCTTGTATCG Shewana3_2461 2950194 - 2950835 + | hypothetical protein Shewana3_2462 2951959 - 2951015 - | response regulator receiver modulated CheW protein Shewana3_2463 2952786 - 2952172 - | methyltransferase type 11 Shewana3_2464 2952883 - 2953440 + | peptidase S16, lon domain-containing protein Shewana3_2465 2953556 - 2954224 + | ECF subfamily RNA polymerase sigma-24 factor TERM 3520 2954822 - 2954812 - g 71 -6.8 -4.20084 | opp_overlap 2954820 2954821 ATCATTCACCCAAAA CCCA GTC TGGG TGCCTCTGCTACACA Shewana3_2466 2954217 - 2954912 + | anti-ECFsigma factor, ChrR TERM 3521 2954992 - 2955027 + F 74 -6.3 -4.47259 | gap 1, overlap 2955019 TACCAACAAACCTAT TTCCCGCTGAGTAA AAAATAAAC TTGC-CAGCGGGAA TTTTGCTGTTATACT Shewana3_2467 2955438 - 2955620 + | hypothetical protein Shewana3_2468 2955898 - 2956158 + | hypothetical protein Shewana3_2469 2957090 - 2956155 - | hypothetical protein Shewana3_2470 2957393 - 2957800 + | hypothetical protein TERM 3522 2957892 - 2957853 - T 78 -8.9 -3.77241 | gap 2, opp_overlap 2957853 2957849, overlap 2957856 AAAGCGTAAGGCAAA TCACTCAGCACTACTCTAC GTCA GTAG-GTAGTGCTGA-TAA ATAGTTTGGCAGTGA TERM 3523 2957890 - 2957856 - T 79 -10.9 -2.9732 | gap 1, opp_overlap 2957853 2957849, overlap 2957853 GCGTAAGGCAAATCA CTCAGCACTACTCTAC GTCA GTAG-GTAGTGCTGAT AAATAGTTTGGCAGT Shewana3_2471 2958732 - 2957863 - | alpha/beta fold family hydrolase TERM 3524 2957958 - 2957932 - G 73 -9.4 -3.72576 | opp_overlap 2957920, overlap 2957917 CCTTGCCTCATGAAA GGCGGTTTCCTC ATC GAGCAAATCGCC ACAATCTGCAAACGA TERM 3525 2958040 - 2958020 - G 85 -12.6 -3.68292 | opp_overlap 2958020 ATTTCGAATAGATAA TGCGCCAG TTTAG CTGGCGCA TCTATGGTGATGTCA TERM 3526 2958020 - 2958040 + g 80 -13.3 -2.97188 | opp_overlap 2958020 ATTTCGAATAGATAA TGCGCCAGT TTA GCTGGCGCA TCTATGGTGATGTCA Shewana3_2472 2959757 - 2958732 - | oxoglutarate dehydrogenase (succinyl-transferring) Shewana3_2473 2960595 - 2959864 - | succinate dehydrogenase (ubiquinone) Shewana3_2474 2960883 - 2961149 + | hypothetical protein TERM 3527 2961200 - 2961169 - T 70 -8.1 -3.68827 | opp_overlap 2961171, overlap 2961171 GAGTCACCACCTAAA CATCAACCCAAGC ACTCGA ACTTGGGTTGATT TATCTTAATGTGCCC TERM 3528 2961171 - 2961198 + T 93 -10 -4.2586 | opp_overlap 2961169 2961171 GTCACCACCTAAACA TCAACCCAAG CACTCGAA CTTGGGTTGA TTTATCTTAATGTGC TERM 3529 2961198 - 2961171 - T 83 -10.7 -3.42395 | opp_overlap 2961171, overlap 2961169 GTCACCACCTAAACA TCAACCCAAGC ACTCGA ACTTGGGTTGA TTTATCTTAATGTGC Shewana3_2475 2963104 - 2961380 - | acyl-CoA synthetase Shewana3_2476 2963613 - 2963233 - | hypothetical protein Shewana3_2477 2963901 - 2964362 + | hypothetical protein Shewana3_2478 2964438 - 2964776 + | hypothetical protein TERM 3530 2964799 - 2964828 + T 100 -18.1 -4.564 | opp_overlap 2964796 2964793 TTGCAAACAGATTCC TGCGCACACTTAA GCAG TTAAGTGTGCGCA TTTTCGTTTAGGGTT Shewana3_2479 2965636 - 2964842 - | hypothetical protein TERM 3531 2965472 - 2965460 - G 76 -4.7 -5.03145 | CAACTTGCCAAAAAA GCCAG ATT CAGGC TCGGAGCCATCACCC Shewana3_2480 2966711 - 2965797 - | LysR family transcriptional regulator TERM 3532 2967378 - 2967358 - g 71 -6.1 -4.31293 | CTAGAGATCAAGAAA TGGGACTAC TTA GTGATCCCA CGCGGCACCACACAT TERM 3533 2967954 - 2967922 - g 74 -4.8 -4.80882 | gap 2 ACCCTACATCAAAAA GGCGTGGCACATGGCC CAC AGCCA-G-GCCGCACC GAAGCCTCGATTGGC Shewana3_2481 2966926 - 2968086 + | homogentisate 1,2-dioxygenase TERM 3534 2968105 - 2968083 - f 82 -8.4 -4.36914 | overlap 2968088 CTCTTGGCTAGAAAA CTAACGCTGC ACC GCAGCATGAG TGAATGGCTTAACTA Shewana3_2482 2968200 - 2969240 + | 4-hydroxyphenylpyruvate dioxygenase TERM 3535 2969271 - 2969289 + T 100 -14.6 -5.74122 | opp_overlap 2969271 CATAAGAAACAAAAA CGGTACGC ACT GCGTACCG TTTTTTTATGTCCTA TERM 3536 2969289 - 2969271 - T 100 -14.6 -5.50774 | opp_overlap 2969271 CATAAGAAACAAAAA CGGTACGC ACT GCGTACCG TTTTTTTATGTCCTA Shewana3_2483 2970840 - 2969437 - | diguanylate cyclase TERM 3537 2970958 - 2970937 - R 80 -10.3 -3.42574 | opp_overlap 2970928 2970941, overlap 2970941 TTAATGGCAGTACAA CCAAGTTTA CATA TAAACTTGG TGGCGGCTTTAACCT Shewana3_2484 2971581 - 2971024 - | hexapaptide repeat-containing transferase Shewana3_2485 2971905 - 2972528 + | lysine exporter protein LysE/YggA Shewana3_2486 2973906 - 2972641 - | hypothetical protein TERM 3538 2973782 - 2973798 + g 70 -10.9 -2.88861 | opp_overlap 2973782 GCACAGGCCGACAAA CTCAGCT CTA AGCTGAG TATATAGGCATGCTG TERM 3539 2973798 - 2973782 - G 82 -10.9 -3.88787 | opp_overlap 2973782 GCACAGGCCGACAAA CTCAGCT CTA AGCTGAG TATATAGGCATGCTG Shewana3_2487 2974016 - 2975755 + | gamma-glutamyltransferase 1 TERM 3540 2975932 - 2975902 - T 84 -9.9 -3.75738 | gap 1, opp_overlap 2975902 CAGCAGCATCAACAA GCCCTG-ATATACA CCAC TGTATACGCAGGGC TTTTTACTCTTTGAG TERM 3541 2975902 - 2975932 + T 95 -7.7 -4.93696 | gap 1, opp_overlap 2975902 CAGCAGCATCAACAA GCCCTG-ATATACA CCAC TGTATACGCAGGGC TTTTTACTCTTTGAG Shewana3_2488 2977404 - 2976766 - | hypothetical protein Shewana3_2489 2979672 - 2977867 - | hypothetical protein Shewana3_2490 2980094 - 2979789 - | hypothetical protein TERM 3542 2980062 - 2980030 - G 72 -3.5 -4.84359 | overlap 2980052 GTAGTTGCACAAAAA TCTAATCCTGCCTTT TTT AAAAGCAAACTCAGA ATCTGCACTTCCTTT TERM 3543 2980246 - 2980216 - R 72 -9.9 -2.7535 | gap 1, opp_overlap 2980226, overlap 2980226 TTGTTTAATACACCA TCTGGAAAAACGCG CATG CGCGT-TTTCCAAA CCTATTAACTAAAAC TERM 3544 2980237 - 2980226 - R 81 -7.2 -4.60487 | opp_overlap 2980226, overlap 2980216 CACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 3545 2980226 - 2980237 + r 73 -7.2 -4.09511 | opp_overlap 2980226 2980216 CACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 3546 2980586 - 2980548 - R 75 -8.3 -3.84246 | gap 1, opp_overlap 2980551 2980554, overlap 2980550 2980551 2980554 GTTTTAACGATTAAA TAG-TAATGGCGGCTATT TCGG ATTAGCCGCCATTATCTT ATAAACCGATGAGTC TERM 3547 2980583 - 2980550 - R 83 -11.1 -3.50722 | opp_overlap 2980551 2980554, overlap 2980548 2980551 2980554 TTTAACGATTAAATA GTAATGGCGGCTATT TCGG ATTAGCCGCCATTAT CTTATAAACCGATGA TERM 3548 2980582 - 2980551 - R 100 -14.6 -2.69951 | opp_overlap 2980551 2980554, overlap 2980550 2980548 2980554 TTAACGATTAAATAG TAATGGCGGCTATT TCGG ATTAGCCGCCATTA TCTTATAAACCGATG TERM 3549 2980551 - 2980582 + r 100 -14.6 -3.21593 | opp_overlap 2980550 2980548 2980551 2980554, overlap 2980554 TTAACGATTAAATAG TAATGGCGGCTATT TCGG ATTAGCCGCCATTA TCTTATAAACCGATG TERM 3550 2980554 - 2980579 + r 100 -11.9 -3.7511 | opp_overlap 2980554 2980551 2980550 2980548, overlap 2980551 ACGATTAAATAGTAA TGGCGGCTATT TCGG ATTAGCCGCCA TTATCTTATAAACCG TERM 3551 2980579 - 2980554 - R 91 -11.9 -3.48671 | opp_overlap 2980551 2980554, overlap 2980551 2980550 2980548 ACGATTAAATAGTAA TGGCGGCTATT TCGG ATTAGCCGCCA TTATCTTATAAACCG Shewana3_2491 2982278 - 2980677 - | hypothetical protein TERM 3552 2981195 - 2981224 + g 73 -6.4 -4.57837 | overlap 2981196 ACCCCACTAACTCAT TCATGGCGGC GACGGTTAAA GCCGCCGTGG TTTTTGGCCAAGTGT Shewana3_2492 2982552 - 2984780 + | peptidyl-dipeptidase Dcp TERM 3553 2984816 - 2984834 + T 100 -14.6 -4.64676 | opp_overlap 2984816 GCGAACAGATAAAAA TGGGGAGC TAA GCTCCCCA TTTTATTGCGCGTAA TERM 3554 2984834 - 2984816 - T 100 -14.6 -5.10064 | opp_overlap 2984816 GCGAACAGATAAAAA TGGGGAGC TAA GCTCCCCA TTTTATTGCGCGTAA Shewana3_2493 2985375 - 2984878 - | GCN5-related N-acetyltransferase Shewana3_2494 2985958 - 2985410 - | nitroreductase TERM 3555 2986056 - 2986039 - R 89 -7 -5.30686 | AAGAGGTACAAAAAA TCCCAC GCAAAA GTGGGA TTGAAAATGTTGCAA Shewana3_2495 2986680 - 2986087 - | DoxX family protein TERM 3556 2986741 - 2986754 + r 86 -8.1 -4.66609 | AAGGATTAATCTTTC GTGGC TTCT GCCAC TTTTTCGATCCCCTC Shewana3_2496 2987603 - 2986731 - | hypothetical protein Shewana3_2497 2989018 - 2987714 - | aminoglycoside phosphotransferase Shewana3_2498 2989774 - 2989109 - | nicotinamide mononucleotide transporter PnuC Shewana3_2499 2990103 - 2989843 - | hypothetical protein Shewana3_2500 2992472 - 2990199 - | TonB-dependent receptor TERM 3557 2991568 - 2991546 - G 70 -9 -3.53444 | overlap 2991547 GTAGGTTGCTTTAAA TCCAGCGCCC GTG GTGCGCTGGC TATCGACACCCGGCT TERM 3558 2991567 - 2991547 - G 77 -12.5 -2.71924 | overlap 2991546 TAGGTTGCTTTAAAT CCAGCGCCC GTG GTGCGCTGG CTATCGACACCCGGC TERM 3559 2991683 - 2991698 + g 70 -10.4 -2.90496 | opp_overlap 2991682, overlap 2991679 CAAGTTGCAGATTAT CGCTGG CATA CCAGCG TAATTTAGCGCGACC Shewana3_2501 2992851 - 2993531 + | cyclic nucleotide-binding protein TERM 3560 2993548 - 2993508 - T 70 -7.6 -3.6682 | opp_overlap 2993546, overlap 2993545 2993547 CTGGATGCACTTAAA GCTTTTGTCGAAGCAGGC ATTTA ACCCACTTCGACAACACC CATACTCGGCAGATA TERM 3561 2993578 - 2993547 - T 84 -11.6 -3.22475 | opp_overlap 2993546, overlap 2993508 2993545 CCCACTTCGACAACA CCCATACTCGGCAG ATAA CAACCAAGTATGGG CCTTTAGCTTAACTT Shewana3_2502 2994771 - 2993587 - | hypothetical protein Shewana3_2503 2995517 - 2994813 - | purine-nucleoside phosphorylase TERM 3562 2995778 - 2995754 - R 91 -7.9 -4.75518 | opp_overlap 2995754 TAGATAAAAGCAAAA GACTTACGCCC TGA AAACGTAAGTC TTTATAAATGGAGCG Shewana3_2504 2996272 - 2995880 - | hypothetical protein Shewana3_2505 2996867 - 2996403 - | thioesterase superfamily protein Shewana3_2506 2997381 - 2996854 - | hypothetical protein Shewana3_2507 2997734 - 2997378 - | histidine triad (HIT) protein Shewana3_2508 2997880 - 2999646 + | peptidase M61 domain-containing protein TERM 3563 2999745 - 2999710 - T 100 -17.8 -3.04203 | opp_overlap 2999715, overlap 2999715 TTAACCCATAAAGCA CAAAAGGGGCAATCGT ATCG ACGATTGCCCCTTTTT ATTTAATTCTTTGTT TERM 3564 2999740 - 2999715 - T 100 -17.7 -4.64846 | opp_overlap 2999715, overlap 2999710 CCATAAAGCACAAAA GGGGCAATCGT ATCG ACGATTGCCCC TTTTTATTTAATTCT TERM 3565 2999715 - 2999740 + T 100 -17.7 -5.39681 | opp_overlap 2999715 2999710 CCATAAAGCACAAAA GGGGCAATCGT ATCG ACGATTGCCCC TTTTTATTTAATTCT Shewana3_2509 3000437 - 2999802 - | LuxR family transcriptional regulator TERM 3566 3000778 - 3000798 + G 71 -10.4 -3.08992 | overlap 3000775 3000781 AATGCAGTCCTATCG CGTGTGGG ACAGA CCCACGCG TCTGTTCCACTGGAT TERM 3567 3000781 - 3000808 + G 73 -12.1 -2.5919 | overlap 3000778 3000775 GCAGTCCTATCGCGT GTGGGACAGAC CCACGC GTCTGTTCCAC TGGATTAATCTCATC Shewana3_2510 3000734 - 3001480 + | cytochrome B561 TERM 3568 3001520 - 3001503 - T 100 -12.7 -5.252 | opp_overlap 3001503 CATGCCTATAAAAAA CGCCAGC AATT GCTGGCG TTTTTTATCAAACTG TERM 3569 3001503 - 3001520 + T 100 -12.7 -5.252 | opp_overlap 3001503 CATGCCTATAAAAAA CGCCAGC AATT GCTGGCG TTTTTTATCAAACTG Shewana3_2511 3001900 - 3001550 - | cytochrome c3 TERM 3570 3002185 - 3002201 + r 100 -12.3 -4.90296 | opp_overlap 3002185 AGCCCCAATAAAAAA GGAGACC CTA GGTCTCC TTTTTGTGAACTTTT TERM 3571 3002201 - 3002185 - R 100 -12.3 -5.45652 | opp_overlap 3002185 AGCCCCAATAAAAAA GGAGACC CTA GGTCTCC TTTTTGTGAACTTTT Shewana3_2512 3003088 - 3002225 - | heat shock protein HtpX TERM 3572 3002798 - 3002811 + g 71 -6.7 -4.25848 | opp_overlap 3002797 3002798, overlap 3002783 3002782 3002806 TGGCGATTGGTAAAT TGCCA CTTC TGGCA TTTTAATCCCAGCTT TERM 3573 3003618 - 3003628 + G 74 -6.8 -4.2828 | opp_overlap 3003616 3003618 CCAAGCGATTAAAGA TGCC GAC GGCA TTTTGATCGGTGGCG Shewana3_2513 3003376 - 3004086 + | peptidase E TERM 3574 3004744 - 3004732 - g 86 -9.1 -4.51847 | opp_overlap 3004726 AAAGAAGCGAGAAAA GCTCC CAA GGAGC TAATCGATCTTGATT TERM 3575 3004810 - 3004794 - g 76 -5 -4.75219 | opp_overlap 3004803, overlap 3004796 CAATTATCAAGAAAA CGCCGC GATTT GGGGCG GAACCCCCACTAAGT TERM 3576 3006050 - 3006034 - g 70 -2.1 -4.93696 | opp_overlap 3006037 3006040, overlap 3006036 CGTAAAGATGAAAAA CCTGTGG CCG CCACTTG GCTGTATCGCTGGAA mdoG 3004504 - 3006084 + | glucan biosynthesis protein G TERM 3577 3006119 - 3006134 + F 95 -7.5 -5.46657 | opp_overlap 3006119 3006113 GTTAAACCATAAAAA CGCCG AACTTA CGGCG TTTTTTATTACGCTA TERM 3578 3006134 - 3006119 - f 89 -7.5 -5.04325 | opp_overlap 3006119, overlap 3006113 GTTAAACCATAAAAA CGCCG AACTTA CGGCG TTTTTTATTACGCTA TERM 3579 3007280 - 3007319 + G 71 -10.2 -3.03661 | overlap 3007279 AATAATGCCATTATG CTTTATGTTGGTTATCAA TTAT TTGAGAACCAACATCAGG GTTTATCCTTAGGTG Shewana3_2515 3006785 - 3007753 + | hypothetical protein TERM 3580 3007786 - 3007801 + T 95 -3.2 -6.02914 | opp_overlap 3007779 3007776 CTCAATAACAAAAAA GAGGTT GTAT GGCCTC TTTTTTTTATATCAC bioD 3008529 - 3007834 - | dithiobiotin synthetase Shewana3_2517 3009412 - 3008585 - | biotin biosynthesis protein BioC Shewana3_2518 3010808 - 3009588 - | aminotransferase, class I and II TERM 3581 3009892 - 3009902 + g 76 -5.4 -4.87291 | opp_overlap 3009890 3009892 TTGAACAATAAGATA TTGC GCT GCAA TTTTTGCTTAAGCTC TERM 3582 3010228 - 3010215 - G 70 -9.5 -3.32294 | GCAAAGTGCGGATAA CGCCG AAAT CGGCG CAATATCACCATCCA TERM 3583 3010793 - 3010807 + g 87 -4.3 -5.5112 | AACCCAGTTTTGAGG TGAGT GGTGA ACTCA TTTTTTCTTACTCAA Shewana3_2519 3012095 - 3011043 - | biotin synthase Shewana3_2520 3012218 - 3013576 + | aminotransferase TERM 3584 3013756 - 3013716 - f 75 -9 -3.70076 | opp_overlap 3013719, overlap 3013718 3013719 3013721 TTAAACTCAGCCAAA TATCAGTTCAACCGAGTG AGTAA CACTCGGCTGGACTGTTT CTCTAAGGCCTCTGA TERM 3585 3013754 - 3013718 - f 89 -11.6 -3.42684 | opp_overlap 3013719, overlap 3013716 3013719 3013721 AAACTCAGCCAAATA TCAGTTCAACCGAGTG AGTAA CACTCGGCTGGACTGT TTCTCTAAGGCCTCT TERM 3586 3013719 - 3013753 + F 100 -15.1 -4.0371 | opp_overlap 3013718 3013716 3013719 3013721 AACTCAGCCAAATAT CAGTTCAACCGAGTG AGTAA CACTCGGCTGGACTG TTTCTCTAAGGCCTC TERM 3587 3013753 - 3013719 - f 100 -15.1 -2.64888 | opp_overlap 3013719, overlap 3013718 3013716 3013721 AACTCAGCCAAATAT CAGTTCAACCGAGTG AGTAA CACTCGGCTGGACTG TTTCTCTAAGGCCTC TERM 3588 3013751 - 3013721 - f 83 -11.9 -2.86124 | opp_overlap 3013719, overlap 3013719 3013718 3013716 CTCAGCCAAATATCA GTTCAACCGAGTG AGTAA CACTCGGCTGGAC TGTTTCTCTAAGGCC TERM 3589 3015246 - 3015228 - g 77 -9.5 -3.80573 | overlap 3015241 TTTATTAGCATTAAA CGCCGCC ATTGA AGCGGCG CGTGCCGGTGAGCAG TERM 3590 3015632 - 3015620 - g 79 -9.1 -4.15222 | opp_overlap 3015620 ATCTCGCTCAAGAAA GCGAG AGC CTCGC CGAGCTATCGCTTAA Shewana3_2521 3014080 - 3015681 + | methyl-accepting chemotaxis sensory transducer TERM 3591 3015740 - 3015709 - T 86 -11.6 -3.28912 | opp_overlap 3015712, overlap 3015684 3015683 3015711 3015712 TCAGAGTGATATCAA TATGGGGCCAACAT CCTG ATGTTGGCCCCTTC TTTAACGACTCGCCT TERM 3592 3015738 - 3015711 - T 100 -14.2 -3.20841 | opp_overlap 3015712, overlap 3015684 3015683 3015709 3015712 AGAGTGATATCAATA TGGGGCCAACAT CCTG ATGTTGGCCCCT TCTTTAACGACTCGC TERM 3593 3015712 - 3015737 + T 100 -17.7 -3.91716 | opp_overlap 3015683 3015711 3015709 3015712 GAGTGATATCAATAT GGGGCCAACAT CCTG ATGTTGGCCCC TTCTTTAACGACTCG TERM 3594 3015737 - 3015712 - T 100 -17.7 -2.52023 | opp_overlap 3015712, overlap 3015683 3015711 3015709 GAGTGATATCAATAT GGGGCCAACAT CCTG ATGTTGGCCCC TTCTTTAACGACTCG Shewana3_2522 3019182 - 3015742 - | multi-sensor hybrid histidine kinase Shewana3_2523 3019358 - 3021310 + | acetyl-CoA synthetase TERM 3595 3021318 - 3021355 + F 100 -13.5 -3.70149 | opp_overlap 3021312, overlap 3021319 ACGAGTAATCGTTAT CCCGCGCTTAATCGTGA TTTA TCACGGTTAAGCGCAGC TTTAGCTCCTGTACG TERM 3596 3021319 - 3021354 + F 100 -17 -2.81768 | opp_overlap 3021312, overlap 3021318 CGAGTAATCGTTATC CCGCGCTTAATCGTGA TTTA TCACGGTTAAGCGCAG CTTTAGCTCCTGTAC TERM 3597 3021456 - 3021476 + F 100 -8.3 -5.69379 | CCCCTTTCTCTTAGT TGCCCCT CCAACCA AGGGGCA TTTTTTTGGTTCTGT TERM 3598 3022542 - 3022558 + G 76 -7.9 -4.41616 | overlap 3022544 ATTGCGATTTTACGC CCCACCG CAT CGGTGAG TTTGTTTCAGCAAAT Shewana3_2524 3021537 - 3023309 + | type III restriction enzyme, res subunit grxA 3023370 - 3023630 + | glutaredoxin 1 TERM 3599 3023672 - 3023644 - T 100 -17.7 -3.9344 | opp_overlap 3023644 3023650, overlap 3023650 AATCCTAATACCAAA TAAAAAGGAGACC TCA GGTCTCCTTTTTA TTTATTACATCAAAC TERM 3600 3023644 - 3023672 + T 100 -17.7 -4.20516 | opp_overlap 3023644 3023650, overlap 3023650 AATCCTAATACCAAA TAAAAAGGAGACC TCA GGTCTCCTTTTTA TTTATTACATCAAAC TERM 3601 3023650 - 3023666 + T 100 -12.3 -5.47159 | opp_overlap 3023644 3023650, overlap 3023644 AATACCAAATAAAAA GGAGACC TCA GGTCTCC TTTTTATTTATTACA TERM 3602 3023666 - 3023650 - T 100 -12.3 -5.37171 | opp_overlap 3023650 3023644, overlap 3023644 AATACCAAATAAAAA GGAGACC TCA GGTCTCC TTTTTATTTATTACA Shewana3_2526 3024852 - 3023689 - | hypothetical protein TERM 3603 3026039 - 3026089 + r 78 -4.2 -5.0925 | gap 4, opp_overlap 3026060, overlap 3026046 AACGACCCATTTACT GGTATT-T-TGCGCCC-C-GAACGAC CTC GCCGTTCCGAGGGCGCCTATAATACC TTTTTCATTTTCCCA TERM 3604 3026147 - 3026161 + r 76 -2.8 -5.32565 | opp_overlap 3026147, overlap 3026140 3026139 CGTTTGCATGAAAAA CAGACT AAG AGTATG TTTTTTAGTTAATTA Shewana3_2529 3026926 - 3026174 - | hypothetical protein TERM 3605 3026898 - 3026850 - G 76 -11 -3.18737 | gap 1, overlap 3026848 3026859 GAACCACCAGCAATA TCTTCAACAGGAGCAGGAGCTGC CACT GCAGCTCCTGCGCC-GAAGAACA TTGCCGTAATTAAGA TERM 3606 3026890 - 3026859 - G 100 -20.2 -3.06315 | overlap 3026850 3026848 GCAATATCTTCAACA GGAGCAGGAGCTGC CACT GCAGCTCCTGCGCC GAAGAACATTGCCGT Shewana3_2530 3027487 - 3026951 - | OmpA/MotB domain-containing protein Shewana3_2531 3028862 - 3027534 - | TolB domain-containing protein TERM 3607 3027923 - 3027888 - G 70 -9 -3.57918 | opp_overlap 3027888, overlap 3027889 ATCTACACGATATAA CTGTGGTCTACCACCG CGCT CGGAGGTAAACAACAA TGACTTGCCATCGGG TERM 3608 3028872 - 3028903 + r 70 -5.4 -4.49958 | gap 1, opp_overlap 3028881, overlap 3028876 TTTCATGGGACTCCT TTAA-TTAAACGTTG GTT CAACGATTAAGTTAA TTTCTTTCATCAAGT TERM 3609 3028893 - 3028881 - R 72 -7.7 -3.90291 | opp_overlap 3028876 3028872 ACTCCTTTAATTAAA CGTTG GTT CAACG ATTAAGTTAATTTCT Shewana3_2532 3029894 - 3028872 - | TolA family protein Shewana3_2533 3030329 - 3029895 - | biopolymer transport protein ExbD/TolR Shewana3_2534 3031015 - 3030329 - | MotA/TolQ/ExbB proton channel Shewana3_2535 3031406 - 3031005 - | 4-hydroxybenzoyl-CoA thioesterase TERM 3610 3031558 - 3031541 - R 100 -11.3 -4.08958 | opp_overlap 3031541 ATTTGTAAATAACAA TGGGGTC AAAC GACCCCA TTTCATTAACATAGT TERM 3611 3031541 - 3031558 + r 100 -11.3 -3.92178 | opp_overlap 3031541 ATTTGTAAATAACAA TGGGGTC AAAC GACCCCA TTTCATTAACATAGT Shewana3_2536 3033757 - 3031577 - | prolyl oligopeptidase TERM 3612 3031814 - 3031830 + g 79 -9.4 -4.22338 | opp_overlap 3031812 CGTCATCACCATAGT CGCAGG ATAGG CCTGCG TTTTAACGTTATGGT TERM 3613 3033740 - 3033726 - G 83 -10 -4.24342 | GTGGCCACTAATAAA CCTTGC TGG GCAAGG CGAAATCTTAATGCC TERM 3614 3034209 - 3034229 + r 100 -15.5 -6.02914 | AATGCATTTTTTGCG GCCCGCTTA GTT TAAGCGGGC TTTTTTTTATCTCGA TERM 3615 3034269 - 3034281 + r 85 -4.1 -5.4833 | ACAGCTAAACTCTAG CGATT TTC AGTCG TTTTTTGTTACATAA Shewana3_2537 3035361 - 3034462 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Shewana3_2538 3035478 - 3035891 + | BadM/Rrf2 family transcriptional regulator TERM 3616 3035956 - 3035921 - T 100 -11.2 -4.73677 | opp_overlap 3035921 GTGAGAAGAAAGAAA CCAATAACGCCAAGTC AGAA GGCTTGGCATTGTTGG TTTATATGAAGTGCA TERM 3617 3035921 - 3035956 + T 100 -13.4 -4.05033 | opp_overlap 3035921 GTGAGAAGAAAGAAA CCAATAACGCCAAGTC AGAA GGCTTGGCATTGTTGG TTTATATGAAGTGCA Shewana3_2539 3036880 - 3036008 - | OmpA/MotB domain-containing protein TERM 3618 3036499 - 3036482 - G 70 -3.4 -4.77567 | gap 1 ATCGGCATAATAAAA CGTCGGC TCCAT GCC-ACG GCTCAGTTCGCTCAA Shewana3_2540 3037023 - 3037691 + | ribonuclease T TERM 3619 3037724 - 3037739 + T 100 -10.4 -4.44667 | opp_overlap 3037724 CCGTCCAATAAAAAA GCTGCC CTAG GGCAGC TTTATTATTACGCGA TERM 3620 3037739 - 3037724 - T 100 -10.4 -5.4505 | opp_overlap 3037724 CCGTCCAATAAAAAA GCTGCC CTAG GGCAGC TTTATTATTACGCGA Shewana3_2541 3038371 - 3037766 - | alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen TERM 3621 3038463 - 3038415 - H 73 -5.3 -4.59376 | gap 1, opp_overlap 3038416 3038417, overlap 3038417 ACTATTAAAGTAAAA CATCCCTTAAACACGCTTGCGC TGATTT GCGCGAGTGTCTTTGAGGGA-G TTTACCAATCAAATC TERM 3622 3038416 - 3038463 + H 93 -12.1 -3.57462 | opp_overlap 3038415 3038417, overlap 3038417 CTATTAAAGTAAAAC ATCCCTTAAACACGCTTGCGC TGATTT GCGCGAGTGTCTTTGAGGGAG TTTACCAATCAAATC TERM 3623 3038417 - 3038462 + H 100 -15.6 -2.74263 | opp_overlap 3038417 3038415, overlap 3038416 TATTAAAGTAAAACA TCCCTTAAACACGCTTGCGC TGATTT GCGCGAGTGTCTTTGAGGGA GTTTACCAATCAAAT TERM 3624 3038462 - 3038417 - H 78 -9 -3.90002 | opp_overlap 3038416 3038417, overlap 3038415 TATTAAAGTAAAACA TCCCTTAAACACGCTTGCGC TGATTT GCGCGAGTGTCTTTGAGGGA GTTTACCAATCAAAT Shewana3_2542 3038742 - 3040061 + | Na+/H+ antiporter NhaC TERM 3625 3040067 - 3040111 + T 100 -10.2 -4.84527 | opp_overlap 3040070 3040081, overlap 3040068 3040070 3040081 GGTGCTCTAGGGCAG ATAGCAATAAAAAAGCGTGG CAAGA CCACGCTTTTTTATGCCTAA TTTTTAATGTCTAGC TERM 3626 3040068 - 3040110 + T 100 -13.7 -3.49993 | opp_overlap 3040070 3040081, overlap 3040067 3040070 3040081 GTGCTCTAGGGCAGA TAGCAATAAAAAAGCGTGG CAAGA CCACGCTTTTTTATGCCTA ATTTTTAATGTCTAG TERM 3627 3040107 - 3040070 - T 100 -15.9 -2.89564 | gap 1, opp_overlap 3040068 3040067 3040070 3040081, overlap 3040081 GCTCTAGGGCAGATA GCAATAAAAAAGCGTGGC AAG ACCACGCTTTTTTAT-GC CTAATTTTTAATGTC TERM 3628 3040070 - 3040107 + T 100 -15.2 -2.57672 | gap 1, opp_overlap 3040070 3040081, overlap 3040068 3040067 3040081 GCTCTAGGGCAGATA GCAATAAAAAAGCGTGG CAAGA CCACGCTTTTTTAT-GC CTAATTTTTAATGTC TERM 3629 3040097 - 3040081 - T 100 -10.1 -5.5353 | opp_overlap 3040081 3040070 3040068 3040067, overlap 3040070 GATAGCAATAAAAAA GCGTGGC AAG ACCACGC TTTTTTATGCCTAAT TERM 3630 3040081 - 3040097 + T 100 -9.4 -5.28778 | opp_overlap 3040070 3040081, overlap 3040070 3040068 3040067 GATAGCAATAAAAAA GCGTGG CAAGA CCACGC TTTTTTATGCCTAAT Shewana3_2543 3041566 - 3040145 - | diguanylate cyclase TERM 3631 3040922 - 3040910 - G 75 -9.1 -3.89346 | TCCCGATGCCATAAA TGCCG TAT CGGCA ATCACATCCCCCCAC TERM 3632 3041717 - 3041702 - R 100 -10.4 -5.61881 | CGCCAAAAACAAAAA GGGAGC CTAA GCTCCC CTATCGAATCTTAAT upp 3042380 - 3041754 - | uracil phosphoribosyltransferase TERM 3633 3042958 - 3042945 - g 80 -3.1 -5.31877 | gap 1, opp_overlap 3042954, overlap 3042947 3042948 3042950 3042952 3042954 ATCGATTACAAAAAA CACGAC ACA GTCG-G TATCGACTTAGTGGC TERM 3634 3042957 - 3042947 - g 74 -6.8 -4.29153 | opp_overlap 3042954, overlap 3042945 3042948 3042950 3042952 3042954 CGATTACAAAAAACA CGAC ACA GTCG GTATCGACTTAGTGG Shewana3_2545 3042708 - 3043745 + | phosphoribosylaminoimidazole synthetase TERM 3635 3044009 - 3043987 - g 71 -10.6 -3.15579 | opp_overlap 3043993, overlap 3043984 3043985 AACAATTGAAAAGTA CCAACCCGAT TTG ATCGTGTTGG CCGGATTTATGCGTA Shewana3_2546 3043745 - 3044389 + | phosphoribosylglycinamide formyltransferase TERM 3636 3044399 - 3044435 + F 100 -13.9 -3.27475 | opp_overlap 3044409, overlap 3044409 GATTAAACACAGCCT CGCGAAAAAAGAGACCT TAA GGGTCTCTTTTTTTTCG TCTTGTCATACAAAA TERM 3637 3044409 - 3044425 + F 100 -8.7 -5.94597 | opp_overlap 3044409, overlap 3044399 AGCCTCGCGAAAAAA GAGACCT TAA GGGTCTC TTTTTTTTCGTCTTG TERM 3638 3044425 - 3044409 - f 95 -8 -5.00884 | opp_overlap 3044409 3044399 AGCCTCGCGAAAAAA GAGACC TTAAG GGTCTC TTTTTTTTCGTCTTG TERM 3639 3044732 - 3044751 + G 70 -2.1 -5.02074 | overlap 3044739 GAATGTTTTTACACC TCGGC CATGGCCACC GCCGA TTTTTTAAAGCATCA TERM 3640 3045149 - 3045173 + G 70 -9.3 -3.50853 | overlap 3045150 ACCGATATTCTGGCG GGGTTTCAAGC GGG GCTTGAGACCA TTCTGGTTACCAGCG TERM 3641 3045150 - 3045172 + G 76 -12.8 -2.70298 | overlap 3045149 CCGATATTCTGGCGG GGTTTCAAGC GGG GCTTGAGACC ATTCTGGTTACCAGC Shewana3_2547 3044528 - 3045274 + | UMP phosphatase TERM 3642 3045714 - 3045728 + G 70 -2.1 -5.00884 | gap 1, overlap 3045714 3045715 AATGGGACTCAAAGG C-GCCT ATCA AGGCAG TTTTTTACAACCAGT Shewana3_2548 3045472 - 3047145 + | peptidase M28 TERM 3643 3047184 - 3047207 + F 100 -14 -4.17048 | opp_overlap 3047187, overlap 3047187 GCTAAAACATCCCTA TAAGGCACCT TGAG AGGTGCCTTA TTATTTTACCAGCCG TERM 3644 3047204 - 3047187 - f 86 -11.3 -3.34431 | opp_overlap 3047184 3047187 AAAACATCCCTATAA GGCACCT TGAG AGGTGCC TTATTATTTTACCAG TERM 3645 3047187 - 3047204 + F 100 -11.3 -4.20868 | opp_overlap 3047187, overlap 3047184 AAAACATCCCTATAA GGCACCT TGAG AGGTGCC TTATTATTTTACCAG TERM 3646 3048143 - 3048121 - g 71 -7.6 -4.07568 | TGCCTGTCTGTAAAA CCGTGGCCGA ATT CCAGCCAGGG CAATATCTGTACTCA asnB 3047610 - 3049274 + | asparagine synthetase B TERM 3647 3049324 - 3049295 - T 100 -18.1 -3.16881 | opp_overlap 3049295 3049302, overlap 3049302 GACGCATGCCATCAA GATAAAAGCCACC CTAG GGTGGCTTTTATC TTTAACTATCTAACT TERM 3648 3049295 - 3049324 + T 100 -18.1 -3.74345 | opp_overlap 3049295 3049302, overlap 3049302 GACGCATGCCATCAA GATAAAAGCCACC CTAG GGTGGCTTTTATC TTTAACTATCTAACT TERM 3649 3049302 - 3049317 + T 100 -10.4 -4.80455 | opp_overlap 3049295 3049302, overlap 3049295 GCCATCAAGATAAAA GCCACC CTAG GGTGGC TTTTATCTTTAACTA TERM 3650 3049317 - 3049302 - T 100 -10.4 -4.70583 | opp_overlap 3049302 3049295, overlap 3049295 GCCATCAAGATAAAA GCCACC CTAG GGTGGC TTTTATCTTTAACTA Shewana3_2550 3050431 - 3049424 - | patatin TERM 3651 3049791 - 3049801 + g 72 -8.2 -3.88787 | ACGACCACAATTTTA CGGG CGC CCCG TTTGTACGCCTCTCG TERM 3652 3050686 - 3050655 - R 100 -12.4 -3.44622 | TATCTTGATAAGCAA TCTATGCCCACG AATCATCA CGCGGGCATAGA TGACACTTGGAAGCT Shewana3_2551 3052923 - 3050707 - | TonB-dependent siderophore receptor TERM 3653 3051982 - 3051965 - G 70 -4.2 -4.65895 | GTTTTTACCGAAAAA TCATCA CTAAAT TGATGA TCGAGAATCGCTTGC TERM 3654 3053167 - 3053186 + r 78 -9.3 -3.72984 | opp_overlap 3053167 CATCTTAATAAAAAA GCCAGCA TCACGC TGCTGGC TTTGACTGGTTGTAA TERM 3655 3053186 - 3053167 - R 100 -9.3 -5.46657 | opp_overlap 3053167 CATCTTAATAAAAAA GCCAGCA TCACGC TGCTGGC TTTGACTGGTTGTAA Shewana3_2552 3055008 - 3053218 - | acyl-CoA dehydrogenase domain-containing protein Shewana3_2553 3055236 - 3056084 + | aldose 1-epimerase TERM 3656 3056132 - 3056114 - T 100 -10.3 -4.68593 | opp_overlap 3056114, overlap 3056086 CCCATCAGTGAAAAA GCCCAGT GCATG ACTGGGC TTTTTTATGCCATCA TERM 3657 3056114 - 3056132 + T 100 -10.3 -5.26316 | opp_overlap 3056086 3056114 CCCATCAGTGAAAAA GCCCAGT GCATG ACTGGGC TTTTTTATGCCATCA Shewana3_2554 3057054 - 3056179 - | 6-phosphogluconate dehydrogenase, NAD-binding TERM 3658 3057282 - 3057269 - R 71 -2.3 -5.14965 | ATCCGTAGCAAAAAA CGCTG GCGG CAGTG TAGCACTCGCTTAGG TERM 3659 3057326 - 3057316 - R 82 -6.8 -4.8048 | GCGTCAGAGTAAAAA TGCC CTC GGCA GCAAACGCAGTGTTC TERM 3660 3057352 - 3057377 + r 100 -9 -4.82901 | opp_overlap 3057353 3057357, overlap 3057353 TGTTCGACAGAAACA ACAAAGGCGC ACATTG GCGCCTTTGC TTTTTATCACGAGCC TERM 3661 3057376 - 3057353 - R 100 -12.5 -4.14627 | opp_overlap 3057352 3057353, overlap 3057357 GTTCGACAGAAACAA CAAAGGCGC ACATTG GCGCCTTTG CTTTTTATCACGAGC TERM 3662 3057353 - 3057376 + r 100 -12.5 -3.49419 | opp_overlap 3057353 3057357, overlap 3057352 GTTCGACAGAAACAA CAAAGGCGC ACATTG GCGCCTTTG CTTTTTATCACGAGC TERM 3663 3057372 - 3057357 - R 81 -7.5 -4.65458 | opp_overlap 3057353 3057352, overlap 3057353 GACAGAAACAACAAA GGCGC ACATTG GCGCC TTTGCTTTTTATCAC Shewana3_2555 3057876 - 3057397 - | thioesterase superfamily protein Shewana3_2556 3058361 - 3057993 - | hypothetical protein TERM 3664 3058502 - 3058517 + r 100 -10.4 -5.61596 | opp_overlap 3058502 CGAGCATAAAAAAAA TGCGCC CATA GGCGCA TTTTTTTATCGGGCT TERM 3665 3058517 - 3058502 - R 100 -10.4 -5.9873 | opp_overlap 3058502 CGAGCATAAAAAAAA TGCGCC CATA GGCGCA TTTTTTTATCGGGCT Shewana3_2557 3059780 - 3058542 - | 3-oxoacyl-[acyl-carrier-protein] synthase II TERM 3666 3058831 - 3058841 + g 72 -8.2 -3.86346 | ACAGATTTCACCGCT GCCG CTT CGGC TTTATCGCCCGCTGG TERM 3667 3059970 - 3059949 - R 100 -15.9 -5.45802 | opp_overlap 3059949 GGGCTAAAACAAAAA CAGGCGGCA TATT TGCCGCCTG TTCTCTAGAATTCAG TERM 3668 3059949 - 3059970 + r 100 -15.9 -3.52192 | opp_overlap 3059949 GGGCTAAAACAAAAA CAGGCGGCA TATT TGCCGCCTG TTCTCTAGAATTCAG TERM 3669 3060012 - 3060036 + r 73 -7.2 -4.24123 | CTTAGAAACGTAATC GATCGCTGCT TGAAC AGTAGTGATC TTTTCAGCTTCTTCA TERM 3670 3060257 - 3060242 - R 70 -7.6 -3.64703 | TCTTTCCTATTCAAA TTACGC ACTT GCGTAA GATTGCGAGTAGTTT TERM 3671 3060303 - 3060323 + r 100 -12.7 -3.53761 | opp_overlap 3060296 CAATGCAAGCTTAGT TTTCGTGGT CTA ACCACGAAA TTTAGCGACCAATTG Shewana3_2558 3061130 - 3060384 - | 3-oxoacyl-[acyl-carrier-protein] reductase Shewana3_2559 3062066 - 3061140 - | [Acyl-carrier-protein] S-malonyltransferase TERM 3672 3061464 - 3061407 - G 73 -9.3 -3.72576 | GCTTGGCGCATTAAA CTGCACATCATTTAAAGCTACCGCTAA TTTA TCAGCAGCAGGTTTCATTAATGCGCAG TGTGATGGCACGCTG TERM 3673 3062139 - 3062108 - R 83 -9.6 -3.93782 | opp_overlap 3062108, overlap 3062109 3062134 TTATTGAACACTAAA CCGTTATCTTGG ACAGCAAA CCAAGATAACGA TAGTTAGGAATTTAG TERM 3674 3062138 - 3062109 - R 79 -10.9 -2.95787 | opp_overlap 3062108, overlap 3062108 3062134 TATTGAACACTAAAC CGTTATCTTGG ACAGCAAA CCAAGATAACG ATAGTTAGGAATTTA Shewana3_2560 3063130 - 3062171 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 3675 3063046 - 3063057 + g 76 -4.4 -5.04987 | CAATCCATTGGTCAC TGGT TTCC ACCA TTTTTTCCAAATCTT Shewana3_2561 3064168 - 3063140 - | putative glycerol-3-phosphate acyltransferase PlsX rpmF 3064354 - 3064184 - | 50S ribosomal protein L32 Shewana3_2563 3064896 - 3064372 - | hypothetical protein TERM 3676 3064946 - 3064976 + H 71 -8.4 -3.48276 | opp_overlap 3064954, overlap 3064949 TCAAAGAAAAATTTC TAACTTAAGTCCCA GTT TGCGACTTAAGTGA TTCTCTAGCCCCAAC TERM 3677 3064949 - 3064973 + H 72 -10.1 -2.88822 | opp_overlap 3064954, overlap 3064946 AAGAAAAATTTCTAA CTTAAGTCCCA GTT TGCGACTTAAG TGATTCTCTAGCCCC Shewana3_2564 3065183 - 3065770 + | maf protein Shewana3_2565 3066665 - 3065931 - | HAD family hydrolase Shewana3_2566 3067706 - 3066717 - | ribosomal large subunit pseudouridine synthase C TERM 3678 3068455 - 3068469 + G 79 -7 -4.59773 | overlap 3068449 TTCGTTGATTATGGT GCCGAG CGC CACGGC TTTTTACCGCTAAAA TERM 3679 3070022 - 3070008 - g 76 -2.8 -5.07011 | CACAGAAACCAAAAA GTCTGA CAG CCAAAC GGCCAATGCGAACCG Shewana3_2567 3068272 - 3071568 + | RNAse E TERM 3680 3071608 - 3071591 - f 100 -11.3 -5.08824 | opp_overlap 3071591 CCTGTAGTGAAAAAA GCCATGC ACTT GCATGGC TTTTTTATTTTCAGC TERM 3681 3071591 - 3071608 + F 100 -11.3 -5.79595 | opp_overlap 3071591 CCTGTAGTGAAAAAA GCCATGC ACTT GCATGGC TTTTTTATTTTCAGC TERM 3682 3071843 - 3071857 + G 74 -7 -4.33248 | GTCGAACCTATGGTC GGCCTC TAT GCGGCC TTTATTATGGGATTG TERM 3683 3072057 - 3072075 + G 71 -6 -4.42653 | TTATCCGTATTGTGC CCTATCCT GTG ATGATAGG TTTTGTGAATGGCCT Shewana3_2568 3071714 - 3073273 + | sulphate transporter TERM 3684 3073664 - 3073641 - T 100 -9.6 -5.42975 | opp_overlap 3073641 CTACACAAATAAAAA GAGCCATGGT ATCA ACCACAGCTC TTAAATCCATTGCTA Shewana3_2569 3073916 - 3073707 - | cold-shock DNA-binding protein family protein rrmA 3075038 - 3074223 - | 23S rRNA methyltransferase A Shewana3_2571 3075878 - 3075072 - | hypothetical protein TERM 3685 3076831 - 3076818 - g 74 -2.3 -5.1963 | opp_overlap 3076818 TCCAAGCAACAAAAA CGCCA TTAT TTGCG TTAACTTAGCCATGG sbcB 3076054 - 3077466 + | exonuclease I TERM 3686 3077623 - 3077592 - f 91 -13.2 -2.64155 | opp_overlap 3077601, overlap 3077588 3077600 CTGGCGTTAAATTGA GGTATAAACGCGAA CTAA CTCGCATTTATACC GTAACAAAATTACTA Shewana3_2573 3077679 - 3078569 + | cytidine deaminase Shewana3_2574 3078868 - 3078653 - | hypothetical protein Shewana3_2575 3079196 - 3078849 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3687 3079230 - 3079245 + r 86 -10.4 -3.8647 | opp_overlap 3079230 TTAATCAAACAAAAA GGGAGC CAAT GCTCCC TTTAGTATGCTGGCT TERM 3688 3079245 - 3079230 - R 100 -10.4 -5.38326 | opp_overlap 3079230 TTAATCAAACAAAAA GGGAGC CAAT GCTCCC TTTAGTATGCTGGCT Shewana3_2576 3079974 - 3079270 - | hypothetical protein TERM 3689 3080126 - 3080101 - H 75 -9 -3.58731 | opp_overlap 3080116 AAAACATTGTGCAAA CCCAGCTAAC TCAAGC GCTAGCCGGG CAAGCCTTACATCGC Shewana3_2577 3080325 - 3080705 + | glyoxalase family protein TERM 3690 3081513 - 3081495 - g 73 -6 -4.47328 | opp_overlap 3081499, overlap 3081482 AATTTGATGATAAAA TCACCCAA GCC TTGGTTGA TTACCCCAATATCAA Shewana3_2578 3080936 - 3084166 + | hypothetical protein TERM 3691 3084199 - 3084218 + F 100 -10 -4.87665 | opp_overlap 3084199 3084194 ACATGGATAATAAAA CGCCTAGT GACC ACTGGGCG TTTTTATAGCTAAAG TERM 3692 3084218 - 3084199 - f 91 -7.8 -4.79955 | opp_overlap 3084199, overlap 3084194 ACATGGATAATAAAA CGCCTAGT GACC ACTGGGCG TTTTTATAGCTAAAG Shewana3_2579 3084400 - 3084756 + | glutaredoxin TERM 3693 3084781 - 3084762 - T 100 -10.6 -4.41348 | opp_overlap 3084763, overlap 3084763 CTTTGCCTAAATAAA TGCGCGCC CTAT GGCGCGCT TTTTATTTGCGCCTT TERM 3694 3084763 - 3084780 + T 100 -14.1 -5.27938 | opp_overlap 3084762 3084763 TTTGCCTAAATAAAT GCGCGCC CTAT GGCGCGC TTTTTATTTGCGCCT TERM 3695 3084780 - 3084763 - T 100 -14.1 -3.24488 | opp_overlap 3084763, overlap 3084762 TTTGCCTAAATAAAT GCGCGCC CTAT GGCGCGC TTTTTATTTGCGCCT Shewana3_2580 3085504 - 3084815 - | hypothetical protein Shewana3_2581 3085670 - 3086134 + | putative lipoprotein TERM 3696 3086198 - 3086176 - T 100 -12.1 -6.12458 | opp_overlap 3086176 3086179 TAAAAAAAGAAAAAA TAAGGGCGA GGTTA TCGCCCTTA TTTCAACGCTTTACT TERM 3697 3086176 - 3086198 + T 93 -12.1 -3.59627 | opp_overlap 3086176, overlap 3086179 TAAAAAAAGAAAAAA TAAGGGCGA GGTTA TCGCCCTTA TTTCAACGCTTTACT TERM 3698 3086179 - 3086195 + T 83 -9.4 -3.92832 | opp_overlap 3086176, overlap 3086176 AAAAAGAAAAAATAA GGGCGA GGTTA TCGCCC TTATTTCAACGCTTT Shewana3_2582 3086444 - 3086265 - | hypothetical protein Shewana3_2583 3087441 - 3086434 - | lipid-A-disaccharide synthase TERM 3699 3087417 - 3087379 - G 86 -8.2 -4.61147 | gap 1, overlap 3087380 GAATAGCACAGAAAA CGGCAGCAAGAGCCACC GCAATG GGTGGCCCTCG-TACCA AATTTTATTTACCAG TERM 3700 3087416 - 3087380 - G 72 -9.5 -3.35604 | gap 1, overlap 3087379 AATAGCACAGAAAAC GGCAGCAAGAGCCACC GCAATG GGTGGCCCTCG-TACC AAATTTTATTTACCA Shewana3_2584 3089244 - 3087442 - | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA Shewana3_2585 3091598 - 3089277 - | DNA internalization-related competence protein ComEC/Rec2 TERM 3701 3090856 - 3090868 + g 71 -10.5 -3.14132 | opp_overlap 3090841 CGCCTGCTCGGATGC GCCGC GAA GCGGC TTAATAGAAACAGCG TERM 3702 3091450 - 3091478 + g 76 -3 -5.09225 | GTAAGCCAACACATC GCGAAGAGTATG CCAGA CAAACTCGGCGC TTTTTTGAATAAGAT TERM 3703 3091597 - 3091586 - G 70 -3 -4.82855 | opp_overlap 3091594, overlap 3091594 CACTAAAGCCAAAAA TGAA TCCA TTCA TAGTGAATTAAGTTA Shewana3_2586 3091631 - 3092140 + | hypothetical protein TERM 3704 3092204 - 3092233 + F 74 -9.4 -3.25896 | opp_overlap 3092203 3092201 3092206 3092211, overlap 3092203 AAACGCATCCAATAG CATCTAAGCACT TTGATT AGCGCTTAGATG TCTTATAAGTGATCC TERM 3705 3092967 - 3092984 + G 71 -6.3 -4.40003 | gap 1, overlap 3092979 ATTTCGGTGATTGAG GTT-CGCC AGT GGCGCAAC TTTGTGTTTATCCCC TERM 3706 3093524 - 3093544 + G 73 -5.4 -4.59376 | GCGCACACTGACACC GCC-GCGGCC AAT GGC-GCTGGC TTTTGCTTTAATCCT Shewana3_2587 3092547 - 3093719 + | NnrS family protein TERM 3707 3093814 - 3093824 + F 75 -5.4 -4.89233 | CACGCCTCTTTTCCC TACC TAA GGTA TTTTTACTGTTACTA Shewana3_2588 3093869 - 3094273 + | phosphate-starvation-inducible E TERM 3708 3094279 - 3094315 + F 100 -13.7 -3.63515 | opp_overlap 3094306, overlap 3094281 3094282 CGATAATTAACCTTC CTGCGCGCCATTGCC AGCCAAA GGCAATGGCGCGATG TTCTTGCCAGTAAAA TERM 3709 3094281 - 3094313 + F 100 -14.9 -3.39784 | opp_overlap 3094306, overlap 3094279 3094282 ATAATTAACCTTCCT GCGCGCCATTGCC AGCCAAA GGCAATGGCGCGA TGTTCTTGCCAGTAA TERM 3710 3094282 - 3094312 + F 100 -18.4 -2.63549 | opp_overlap 3094306, overlap 3094281 3094279 TAATTAACCTTCCTG CGCGCCATTGCC AGCCAAA GGCAATGGCGCG ATGTTCTTGCCAGTA Shewana3_2589 3094425 - 3094727 + | type IV pilus assembly PilZ Shewana3_2590 3094805 - 3095473 + | hypothetical protein Shewana3_2591 3095460 - 3095801 + | RepA domain-containing protein TERM 3711 3095827 - 3095850 + T 71 -8.2 -3.41587 | opp_overlap 3095827 TATGCATTGATATTA GCGGTTATCG GGAG TGATAACTGC TTAAGTTTTCTGCAA TERM 3712 3095941 - 3095918 - T 93 -12.5 -3.17797 | opp_overlap 3095915 3095918 TTTAGAGAGATTTAA TTGGCCGCA ACCTAA TGCGGCCAA TGGTTCTGAACCTGA TERM 3713 3095918 - 3095941 + T 89 -12.5 -2.83271 | opp_overlap 3095918, overlap 3095915 TTTAGAGAGATTTAA TTGGCCGCA ACCTAA TGCGGCCAA TGGTTCTGAACCTGA Shewana3_2592 3096334 - 3096176 - | hypothetical protein TERM 3714 3096714 - 3096726 + G 76 -5.5 -4.76041 | TGGCTTACTCGGCGG TCCTG TCA CGGGA TTTTTAGTCGGTATC TERM 3715 3097096 - 3097058 - g 91 -6.7 -5.14563 | overlap 3097095 TCCGTGACCAAAAAA CCATGTTCGATAAGCTA TCCTC CAGCTTCTCGACCAAGG CGCTCAAGATTGCCG TERM 3716 3097897 - 3097881 - g 76 -8 -4.21462 | ACCGATCATTGAAAA TGCCGT CAAAC ACGGCA CCTCCCATATGATTG Shewana3_2593 3096472 - 3098154 + | signal transduction histidine kinase, LytS Shewana3_2594 3098151 - 3098861 + | putative two-component response-regulatory protein YehT Shewana3_2595 3099057 - 3100511 + | carbon starvation protein CstA TERM 3717 3100553 - 3100572 + F 100 -12.2 -5.64274 | opp_overlap 3100553 3100548 GCGACTCAAATTGAA CGGACACT CATC AGTGTCCG TTTTTTTATCCATCG TERM 3718 3100572 - 3100553 - f 89 -12.2 -3.29324 | opp_overlap 3100553, overlap 3100548 GCGACTCAAATTGAA CGGACACT CATC AGTGTCCG TTTTTTTATCCATCG Shewana3_2596 3100650 - 3101018 + | hypothetical protein TERM 3719 3101061 - 3101099 + T 100 -15.5 -5.13521 | opp_overlap 3101064, overlap 3101064 CACAAGAACAGACAA AAATGCGCGGGATAATT CACTC GATTATCCCGCGCATTA TTTTTTAAGTGGTTT TERM 3720 3101096 - 3101064 - T 100 -16.5 -5.1383 | opp_overlap 3101061 3101064 AAGAACAGACAAAAA TGCGCGGGATAAT TCACTCG ATTATCCCGCGCA TTATTTTTTAAGTGG TERM 3721 3101064 - 3101096 + T 100 -17.2 -4.64763 | opp_overlap 3101064, overlap 3101061 AAGAACAGACAAAAA TGCGCGGGATAATT CACTC GATTATCCCGCGCA TTATTTTTTAAGTGG Shewana3_2597 3102292 - 3101150 - | L-sorbosone dehydrogenase (SNDH) TERM 3722 3101467 - 3101437 - G 80 -9.6 -3.98991 | CCAAATAAAAATGAA TGCCGAGCGGCGCA ACA TGCGCCCCTAGGGA GAGTGCCGGTGCAGT TERM 3723 3101674 - 3101644 - G 71 -7.6 -4.06502 | overlap 3101640 TATCGCTAAACCAAA GGGTTTGAGTGCCA GGC TGAAAATCAAACCC GACGGAATTACGAAC TERM 3724 3103034 - 3103022 - g 74 -4.8 -4.80959 | TAATGGATAAGAAAA TGCG GGATG CGCA AAAATCTGCAGGCTA Shewana3_2598 3102604 - 3103050 + | hypothetical protein Shewana3_2599 3103984 - 3103115 - | hypothetical protein Shewana3_2600 3104710 - 3104099 - | GTP cyclohydrolase II Shewana3_2601 3105330 - 3104974 - | hypothetical protein nrdG 3105917 - 3105456 - | anaerobic ribonucleotide reductase-activating protein TERM 3725 3105992 - 3105966 - R 100 -13.8 -4.00532 | GGGCTAAAGATCAAA GCACAGTCGC CACCAGT GCGACTGTGC CAGTGTAACAAAACA Shewana3_2603 3108140 - 3106023 - | anaerobic ribonucleoside triphosphate reductase TERM 3726 3108414 - 3108389 - R 100 -11.9 -4.02022 | opp_overlap 3108389 GCTAATCACGACAAA GGACCTTGGCC CTAA AGCCAAAGTCC TTGTAATAAAAAATC TERM 3727 3108389 - 3108414 + r 73 -9 -3.4072 | opp_overlap 3108389 GCTAATCACGACAAA GGACCTTGGC CCTAAA GCCAAAGTCC TTGTAATAAAAAATC Shewana3_2604 3109205 - 3108510 - | hypothetical protein TERM 3728 3108849 - 3108864 + g 71 -6.1 -4.38712 | overlap 3108832 GCTCGGCTTTTGGCT CGGCA AATTAA TGCCG TTTTGTGACAGTCGC Shewana3_2605 3110317 - 3109370 - | patatin TERM 3729 3111948 - 3111927 - g 87 -7.2 -5.03314 | CCCATGCGTAAAAAA CCTGCGGC GCCTCT GCTGCAGG ATCATGACGACGAGC Shewana3_2606 3110619 - 3111968 + | DEAD/DEAH box helicase domain-containing protein Shewana3_2607 3112067 - 3112504 + | hypothetical protein TERM 3730 3112511 - 3112541 + F 100 -13.4 -3.53444 | overlap 3112512 AAAGCTTAAAGCCTG TGAGCTTAGCGC GGCTGTA GCGCTAAGCTCG TTTCCCCACAGCTCA TERM 3731 3112512 - 3112540 + F 100 -14.7 -2.71924 | overlap 3112511 AAGCTTAAAGCCTGT GAGCTTAGCGC GGCTGTA GCGCTAAGCTC GTTTCCCCACAGCTC Shewana3_2608 3112562 - 3113071 + | hypothetical protein TERM 3732 3113586 - 3113572 - g 73 -3.4 -5.00616 | opp_overlap 3113579, overlap 3113573 CGTCCCTTTAAAAAA TCCCCC TGC GGAGGT TGCCCTGCTTTAAAA Shewana3_2609 3113197 - 3113655 + | hypothetical protein TERM 3733 3113987 - 3113930 - T 81 -11.5 -2.89602 | opp_overlap 3113946, overlap 3113933 3113946 GCGGTTATACTAAAC GCAGCGCAAATAAAAACGCCGATGA GGTCAGAT TCATCGGCGTTTTTATATTCGGTTC GCGCGGATTAATGAA TERM 3734 3113984 - 3113933 - T 83 -11.8 -2.69601 | opp_overlap 3113946, overlap 3113930 3113946 GTTATACTAAACGCA GCGCAAATAAAAACGCCGATGA GGTCAGAT TCATCGGCGTTTTTATATTCGG TTCGCGCGGATTAAT TERM 3735 3113946 - 3113971 + T 100 -11.2 -5.1167 | opp_overlap 3113933 3113930 3113946 CAGCGCAAATAAAAA CGCCGATGAG GTCAGA TTCATCGGCG TTTTTATATTCGGTT TERM 3736 3113971 - 3113946 - T 100 -10.5 -5.28942 | opp_overlap 3113946, overlap 3113933 3113930 CAGCGCAAATAAAAA CGCCGATGA GGTCAGAT TCATCGGCG TTTTTATATTCGGTT Shewana3_2610 3115302 - 3114007 - | peptidase M23B Shewana3_2611 3118625 - 3115569 - | exonuclease SbcC, putative TERM 3737 3116764 - 3116779 + g 71 -5.4 -4.43815 | overlap 3116765 TGCGTCAATGTCGAC TCTTGC TGTT GCAAGG TTTTGATCTGTTCCT Shewana3_2612 3119824 - 3118622 - | exodeoxyribonuclease I subunit D Shewana3_2613 3120914 - 3120105 - | hypothetical protein TERM 3738 3120706 - 3120696 - G 70 -2.4 -5.03145 | overlap 3120697 CAAGCTCGCAAAAAA GCTG CCA CCGC AGGCCTGTAATTTGT TERM 3739 3121704 - 3121732 + G 88 -3.7 -5.60993 | opp_overlap 3121695, overlap 3121705 AGTCAAGCCGCAGCC AGTGGCATGGGCG CAG CGCTGATCCCACG TTTTTTTATCGAAGA Shewana3_2614 3120963 - 3121925 + | LysR family transcriptional regulator TERM 3740 3121959 - 3121929 - T 73 -9.9 -2.91239 | opp_overlap 3121937, overlap 3121937 GACAGAGCCTAGAGA GTAAAAAACCACC TGAGC GGTGGTTTTTTAA CGGCTTATCCGGAGA TERM 3741 3121951 - 3121937 - T 91 -7.1 -5.24989 | opp_overlap 3121937, overlap 3121929 CTAGAGAGTAAAAAA CCACC TGAGC GGTGG TTTTTTAACGGCTTA TERM 3742 3121937 - 3121951 + T 89 -7.1 -5.03145 | opp_overlap 3121937 3121929 CTAGAGAGTAAAAAA CCACC TGAGC GGTGG TTTTTTAACGGCTTA Shewana3_2615 3122366 - 3121980 - | hypothetical protein Shewana3_2616 3122619 - 3122389 - | RNA-binding S4 domain-containing protein Shewana3_2617 3123226 - 3122690 - | GCN5-related N-acetyltransferase TERM 3743 3123261 - 3123279 + r 80 -10.3 -3.48276 | opp_overlap 3123261 GACGAACTAAAAAAA TGGCAGC TAAAC GCTGCCA TTGTCTCGGCAAGGA TERM 3744 3123279 - 3123261 - R 100 -10.3 -5.65513 | opp_overlap 3123261 GACGAACTAAAAAAA TGGCAGC TAAAC GCTGCCA TTGTCTCGGCAAGGA Shewana3_2618 3123578 - 3123300 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3745 3123752 - 3123697 - R 78 -5.7 -4.8622 | gap 2, opp_overlap 3123700, overlap 3123705 CTGTTTAATTAAAAA GTC--TTAAACTGCGCCGTCATTAATT TTGT AATCGATAACGGCGCAGCATAATTGAC TCGGTATTAAGCCTT TERM 3746 3123742 - 3123705 - R 100 -14.3 -3.68853 | opp_overlap 3123700, overlap 3123697 TTAAAAAGTCTTAAA CTGCGCCGTCATTAATT TTGT AATCGATAACGGCGCAG CATAATTGACTCGGT Shewana3_2619 3125594 - 3123759 - | hypothetical protein TERM 3747 3124596 - 3124572 - G 70 -4.4 -4.64598 | TAAGGAGGCGAAAAA GGCTTTTAAA TCCCC TTTAAAACCC ACTTGCTCACGGACT Shewana3_2620 3125675 - 3126184 + | diguanylate cyclase TERM 3748 3126211 - 3126186 - T 91 -10.5 -4.19371 | opp_overlap 3126192, overlap 3126192 TAAAGCTTCAATAAA GAAAAAGCCCC TTAC GGGGCTTTTTA GATCTGTATCGCGAA TERM 3749 3126192 - 3126205 + T 100 -9.5 -4.73448 | opp_overlap 3126186 3126192 TTCAATAAAGAAAAA GCCCC TTAC GGGGC TTTTTAGATCTGTAT TERM 3750 3126205 - 3126192 - T 100 -9.5 -5.47159 | opp_overlap 3126192, overlap 3126186 TTCAATAAAGAAAAA GCCCC TTAC GGGGC TTTTTAGATCTGTAT TERM 3751 3126251 - 3126262 + T 80 -3.6 -5.35815 | TTACAGTTCGACGTT GTGC ATAC GCGC TTTTTCTTTGATATA Shewana3_2621 3127483 - 3126236 - | TPR repeat-containing protein Shewana3_2622 3128109 - 3127486 - | TonB family protein Shewana3_2623 3128515 - 3128111 - | biopolymer transport protein ExbD/TolR TERM 3752 3128358 - 3128368 + g 73 -5.4 -4.70353 | overlap 3128355 GAAGGCTTAGAAGTC GCTT GTG AAGC TTTTGGTTTGTTATA TERM 3753 3128552 - 3128569 + r 71 -4.9 -4.67641 | GCGGCATGCTGTCTT TTAGCTT TTCT AAGCTGA TTTTCATTTTGGCAT Shewana3_2624 3129056 - 3128529 - | MotA/TolQ/ExbB proton channel Shewana3_2625 3130411 - 3129056 - | MotA/TolQ/ExbB proton channel Shewana3_2626 3131193 - 3130411 - | hypothetical protein TERM 3754 3130743 - 3130757 + g 70 -2.8 -4.77986 | overlap 3130725 CTAAAGTTACTTCAG CAGTGT TTA ACAGTG TTTTTAACTCTTTAA TERM 3755 3131235 - 3131225 - R 85 -4 -5.5074 | GAAGTGAATAAAAAA GTTA ACT TAAC AGCAACATCACTTTA TERM 3756 3131387 - 3131370 - R 82 -8.5 -4.40804 | opp_overlap 3131353 CATCATTTCACAAAA TGTTGAC CTGT GTCAACA TTCGGGACACGTAAA TERM 3757 3131709 - 3131728 + r 100 -10.8 -5.10968 | opp_overlap 3131709 ATCTACCGAAAAAAA GGCTTACT ACAT AGTAAGCC TTTTTATATGTTGGT TERM 3758 3131728 - 3131709 - R 100 -10.8 -5.47821 | opp_overlap 3131709 ATCTACCGAAAAAAA GGCTTACT ACAT AGTAAGCC TTTTTATATGTTGGT Shewana3_2627 3134592 - 3131779 - | TonB-dependent receptor TERM 3759 3133340 - 3133354 + g 70 -4.3 -4.71426 | AGACCAACCATCGCA CGATA AGTCA TATCG TTTTGTTCATAGCGA TERM 3760 3134607 - 3134619 + r 72 -6.3 -4.35483 | TTGTCTATCTCCCTG GACAT ATT ATGTC TTTATTATAATCCGC TERM 3761 3134792 - 3134835 + r 100 -14.8 -4.96646 | opp_overlap 3134796 3134803, overlap 3134796 3134803 GGAGAAGCGTCGGTA AAAACAAGAAACGCCAGTCA TTGC TGACTGGCGTTTTTTGTTAA TTTTTAGTTATCTAG TERM 3762 3134831 - 3134796 - R 100 -17.8 -4.57341 | opp_overlap 3134796 3134792 3134803, overlap 3134803 AAGCGTCGGTAAAAA CAAGAAACGCCAGTCA TTGC TGACTGGCGTTTTTTG TTAATTTTTAGTTAT TERM 3763 3134796 - 3134831 + r 100 -20 -3.89085 | opp_overlap 3134796 3134803, overlap 3134792 3134803 AAGCGTCGGTAAAAA CAAGAAACGCCAGTCA TTGC TGACTGGCGTTTTTTG TTAATTTTTAGTTAT TERM 3764 3134824 - 3134803 - R 100 -14.5 -4.76802 | opp_overlap 3134803 3134796 3134792, overlap 3134796 GGTAAAAACAAGAAA CGCCAGTCA TTGC TGACTGGCG TTTTTTGTTAATTTT TERM 3765 3134803 - 3134824 + r 100 -14.5 -5.61689 | opp_overlap 3134796 3134803, overlap 3134796 3134792 GGTAAAAACAAGAAA CGCCAGTCA TTGC TGACTGGCG TTTTTTGTTAATTTT Shewana3_2628 3136081 - 3134873 - | porin Shewana3_2629 3138734 - 3136302 - | DNA polymerase II TERM 3766 3137309 - 3137293 - G 73 -2.9 -5.00616 | overlap 3137294 CGCGCGCCCAAAAAA CCCGGAA CAG TTTCAGG CTCATCTAATGCAGA TERM 3767 3138808 - 3138792 - H 75 -5.1 -4.87592 | overlap 3138793 GGACACAGAATAAAA TTGCCAT AAA ATGGCAG AAAAGTTTCTTAGGC TERM 3768 3138807 - 3138793 - H 71 -8.6 -3.5147 | overlap 3138792 GACACAGAATAAAAT TGCCAT AAA ATGGCA GAAAAGTTTCTTAGG TERM 3769 3138922 - 3138966 + G 73 -6.4 -4.46212 | gap 1, opp_overlap 3138920 3138922 3138924, overlap 3138924 CGCTATCTATAAAGA TATTGC-CGCCGCTTTGCCTA ATTT TAGGCCACGCCGCGAGCAAAA TTTTATGGTGGCAGA TERM 3770 3139151 - 3139114 - g 83 -5.5 -5.1356 | gap 1, opp_overlap 3139142, overlap 3139116 CGCGAGTAAGAAAAA GGT-CTGTATCGCCACGG CGA CCGTGGCACTGCAGGAGC AGTTACTGCACAAAG dinG 3138875 - 3140947 + | ATP-dependent DNA helicase DinG Shewana3_2631 3140957 - 3141730 + | hypothetical protein Shewana3_2632 3141721 - 3142389 + | primosomal replication protein N'', putative Shewana3_2633 3142399 - 3143091 + | hypothetical protein Shewana3_2634 3143097 - 3143999 + | histone deacetylase superfamily protein Shewana3_2635 3144033 - 3144320 + | hypothetical protein Shewana3_2636 3146663 - 3145167 - | hypothetical protein TERM 3771 3146256 - 3146266 + g 76 -5.4 -4.8066 | CATAACCCCTTGAAT CTCA GAC TGAG TTTTTGAATTGTATT TERM 3772 3146324 - 3146305 - G 71 -5 -4.46656 | TCTACAACACCAAAA CCCTCATC AATA AATAAGGG AAATTTAAGACCATT TERM 3773 3146741 - 3146692 - R 71 -8.9 -3.36505 | opp_overlap 3146699, overlap 3146699 AGATGCCATCCACAA TTAACAATGTACCCTAGCCTACA TTAA TATAGGTTAAAGTACATCATTAA TTCACATAAAAAACT Shewana3_2637 3147925 - 3147377 - | resolvase domain-containing protein Shewana3_2638 3149577 - 3148198 - | KAP P-loop domain-containing protein TERM 3774 3150169 - 3150156 - g 70 -8.1 -3.70902 | TCGGCCAGAGCTAAA CCAGG TTAT CCTGG AGCTTATCTGTGAAA Shewana3_2639 3149659 - 3151272 + | IS4 family transposase TERM 3775 3153575 - 3153589 + G 72 -10 -3.42459 | overlap 3153564 ATGTGGAGATTTTCC CCTTGC TAA GCAAGG TTACTCTTGTACCTG Shewana3_2640 3151732 - 3154080 + | hypothetical protein Shewana3_2641 3155380 - 3154100 - | phage integrase family protein TERM 3776 3155148 - 3155132 - G 79 -8.1 -4.41206 | AACTACTTGAGAAAA TTCAGAA TCA TTCTGAA CGTGTCCCTCAATAA TERM 3777 3155725 - 3155694 - R 100 -17.6 -4.93547 | opp_overlap 3155697 3155702, overlap 3155702 CCAACCAAGTAAAAA TAATAAAAGCCTGC TATT GCAGGCTTTTATTA TAAGGGCTTCAGCAG TERM 3778 3155697 - 3155722 + r 100 -14.9 -3.31322 | opp_overlap 3155694 3155702, overlap 3155702 ACCAAGTAAAAATAA TAAAAGCCTGC TATT GCAGGCTTTTA TTATAAGGGCTTCAG TERM 3779 3155717 - 3155702 - R 100 -10.4 -5.16681 | opp_overlap 3155702 3155697, overlap 3155694 GTAAAAATAATAAAA GCCTGC TATT GCAGGC TTTTATTATAAGGGC TERM 3780 3155702 - 3155717 + r 100 -10.4 -4.77165 | opp_overlap 3155694 3155702, overlap 3155697 GTAAAAATAATAAAA GCCTGC TATT GCAGGC TTTTATTATAAGGGC Shewana3_2642 3156130 - 3155765 - | helix-hairpin-helix repeat-containing competence protein ComEA TERM 3781 3156313 - 3156295 - R 79 -8.1 -4.39571 | opp_overlap 3156295, overlap 3156289 TCTAGAAAGCCAAAA GGACGCC GTTAA GGCATCC TTTCGCGAAGTACCA Shewana3_2643 3157529 - 3156336 - | methionine gamma-lyase TERM 3782 3157799 - 3157773 - R 100 -14.6 -5.52023 | opp_overlap 3157768 ATCAGCAATAAAAAA TGCGCTAATAAC AGG GTCATTAGCGCA TTAGCATTTAGCCTA Shewana3_2644 3159050 - 3157848 - | hypothetical protein TERM 3783 3158335 - 3158356 + g 100 -6.5 -5.41746 | gap 1, opp_overlap 3158325 AGCAACACTGCAGAC TCGGCCG-CG TAT CGACGGACGA TTTTTTTCGCGAGTT Shewana3_2645 3160507 - 3159047 - | protein of unknown function DUF463, YcjX family protein TERM 3784 3159780 - 3159767 - G 86 -5.9 -5.09173 | TAACAGCGGAAAAAA CGCCA GCAG CGGCG CGCCTTCCCACTCCC TERM 3785 3160591 - 3160574 - R 84 -9.8 -3.84915 | opp_overlap 3160574 GAGATTAAGCAACAA GGGCGG ACATGG CCGCCC TTTAGAGGGATTACA TERM 3786 3160574 - 3160591 + r 78 -9.8 -3.55622 | opp_overlap 3160574 GAGATTAAGCAACAA GGGCGG ACATGG CCGCCC TTTAGAGGGATTACA Shewana3_2646 3160988 - 3160602 - | phage shock protein C, PspC pspB 3161208 - 3160975 - | phage shock protein B Shewana3_2648 3161915 - 3161232 - | phage shock protein A, PspA TERM 3787 3161451 - 3161482 + g 71 -5.8 -4.41348 | overlap 3161447 TTTGCTTGAGTCTAA CTGCTTCTTCACTT CTAA ACGTGATGAGGCGG TTTGTTTACGCAAAA TERM 3788 3161936 - 3161973 + H 100 -8.5 -5.2894 | gap 1, opp_overlap 3161935 TATCCTCAAATTGAT GTTGGTCTCGCTTAGGGT AAT ACACTAAGTGTG-CCAAC TTTTATTTTATGTTT TERM 3789 3162099 - 3162089 - H 81 -4 -5.32699 | CGAAAGACTAAAAAA TATC GTG GATA ATAAATTTCAGCAAG Shewana3_2649 3162093 - 3163181 + | Fis family transcriptional regulator TERM 3790 3163759 - 3163775 + G 74 -4.4 -4.8667 | gap 1, overlap 3163761 TGATCTTTCGCCTAG CG-CGCA AAGA TGCGTCG TTTTTATCGAATCTC TERM 3791 3163930 - 3163919 - g 70 -4.4 -4.63527 | GCACTACGCTAAAAA CGAA TATA TTCG CTATCGCCGCAATCC Shewana3_2650 3163251 - 3164876 + | acetate kinase Shewana3_2651 3164876 - 3165907 + | binding-protein-dependent transport systems inner membrane component Shewana3_2652 3165894 - 3166784 + | binding-protein-dependent transport systems inner membrane component Shewana3_2653 3166788 - 3167795 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Shewana3_2654 3167776 - 3168561 + | ABC transporter related Shewana3_2655 3168607 - 3169869 + | trans-2-enoyl-CoA reductase TERM 3792 3169914 - 3169897 - f 100 -12.7 -3.57462 | opp_overlap 3169897 CACCTTACCTTTAAA CGCCACC CTCG GGTGGCG TTTTTATTTGCTGCA TERM 3793 3169897 - 3169914 + F 100 -12.7 -5.33405 | opp_overlap 3169897 CACCTTACCTTTAAA CGCCACC CTCG GGTGGCG TTTTTATTTGCTGCA Shewana3_2656 3169988 - 3170200 + | molybdenum-pterin binding TERM 3794 3170286 - 3170246 - T 100 -14.4 -3.02043 | gap 1, opp_overlap 3170251 3170256, overlap 3170256 AACTCGGTTTCAATA CAAACA-AAAAGGCCAAGT AAAC ACTTGGCCTTTTCTATTTG CTTCGCGAAAGCTTT TERM 3795 3170251 - 3170280 + T 100 -12.3 -3.54146 | opp_overlap 3170246 3170256, overlap 3170256 GGTTTCAATACAAAC AAAAAGGCCAAGT AAAC ACTTGGCCTTTTC TATTTGCTTCGCGAA TERM 3796 3170275 - 3170256 - T 100 -12.2 -5.4659 | opp_overlap 3170251 3170256, overlap 3170246 CAATACAAACAAAAA GGCCAAGT AAAC ACTTGGCC TTTTCTATTTGCTTC TERM 3797 3170256 - 3170275 + T 100 -12.2 -4.84539 | opp_overlap 3170256 3170246, overlap 3170251 CAATACAAACAAAAA GGCCAAGT AAAC ACTTGGCC TTTTCTATTTGCTTC TERM 3798 3170343 - 3170318 - T 73 -9.9 -3.01791 | gap 1, opp_overlap 3170321, overlap 3170298 3170321 ATTGCTTCGCCAATA TAAGGGATAAGC TCA GCT-ATCCCTTA TCATCATTAACCTTC Shewana3_2657 3172215 - 3170350 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3799 3172191 - 3172152 - G 76 -5 -4.90471 | gap 1, opp_overlap 3172186 3172190 ATGCAAAAGATAAAA TCACAAGTACGAGAATGCC TTT AGCAATCACGC-CTTGCGA ACCGTCGCGGATCTT TERM 3800 3172274 - 3172252 - R 100 -10.6 -5.62288 | opp_overlap 3172252 TTAACAAAATAAAAA GGCGCATC AACTTGA GATGCGCC TTTCTGTAATTTATG TERM 3801 3172252 - 3172274 + r 91 -10.6 -4.19123 | opp_overlap 3172252 TTAACAAAATAAAAA GGCGCATC AACTTGA GATGCGCC TTTCTGTAATTTATG TERM 3802 3172400 - 3172383 - R 100 -9.9 -4.62471 | opp_overlap 3172383 TTCAATTCGTAAAAA GCACTGT TTAA ACAGTGC TTATCATTACGAACG TERM 3803 3172383 - 3172400 + r 78 -9.9 -3.50853 | opp_overlap 3172383 TTCAATTCGTAAAAA GCACTGT TTAA ACAGTGC TTATCATTACGAACG Shewana3_2658 3172714 - 3172442 - | histone family protein DNA-binding protein TERM 3804 3172468 - 3172488 + g 72 -3.9 -4.77036 | overlap 3172470 CGTCTTTCAGAGCTT TACCAGCTT TGA ATGCTGGAA TTTTTGCTGCTGCGA TERM 3805 3172888 - 3172857 - R 90 -11.6 -3.65425 | overlap 3172850 TGGATACAGCTCAAA GCCAGTTGCGCCAA GGGC TTGGAGCAACCGAC TCTCCACAGACCTAG Shewana3_2659 3175332 - 3172975 - | Lon-A peptidase TERM 3806 3175433 - 3175417 - R 100 -10.1 -6.09196 | opp_overlap 3175417 3175413 GGCAAAATAAAAAAA GGAGCCC GAT GGACTCC TTGATTTTCAGATTA TERM 3807 3175417 - 3175433 + r 70 -7.9 -3.69437 | opp_overlap 3175417, overlap 3175413 GGCAAAATAAAAAAA GGAGCCC GAT GGACTCC TTGATTTTCAGATTA clpX 3176745 - 3175465 - | ATP-dependent protease ATP-binding subunit clpP 3177454 - 3176846 - | ATP-dependent Clp protease proteolytic subunit TERM 3808 3177146 - 3177128 - G 80 -4.4 -5.06414 | overlap 3177129 GCCCGCTAATAAAAA CGCGCCCA TGC TGGCCGCT TGACCAATACACACA TERM 3809 3177477 - 3177506 + r 100 -15.1 -3.35679 | opp_overlap 3177477 3177503 TTCCCTAAATAAAAA TGGCTCGCATGAG GAGC CTCATACGAGCCA TTATAAATGGCGAAC TERM 3810 3177506 - 3177477 - R 100 -17.3 -5.27335 | opp_overlap 3177477, overlap 3177503 TTCCCTAAATAAAAA TGGCTCGCATGAG GAGC CTCATACGAGCCA TTATAAATGGCGAAC tig 3178848 - 3177544 - | trigger factor TERM 3811 3177642 - 3177661 + g 74 -7.8 -4.19258 | opp_overlap 3177632, overlap 3177645 CAACAGCTTGCTCTT CAAGCGCA ACAT TGCGCATG TTTTGCATCAGCTCT TERM 3812 3179077 - 3179063 - H 100 -11.4 -5.626 | opp_overlap 3179063 TAGGGTATAAAAAAA GCGACC AGA GGTCGC TTTTTTTATTTTGTA TERM 3813 3179063 - 3179077 + H 100 -11.4 -6.14618 | opp_overlap 3179063 TAGGGTATAAAAAAA GCGACC AGA GGTCGC TTTTTTTATTTTGTA TERM 3814 3179575 - 3179590 + H 100 -10.4 -4.94992 | opp_overlap 3179574 TAGATGCTGAATTAT CAGGCG AATA CGCCTG TTTTTATCCATTTCG Shewana3_2663 3179719 - 3180573 + | methenyltetrahydrofolate cyclohydrolase TERM 3815 3180748 - 3180719 - T 86 -11.7 -3.27215 | gap 1, opp_overlap 3180720 3180727, overlap 3180727 AAAGCGTGAGACCAA TAAAAAAACCTGCC ATT GGCAGGTTTTTT-A TTATCGATGCGAATC TERM 3816 3180720 - 3180748 + T 100 -13.3 -3.35996 | opp_overlap 3180719 3180727, overlap 3180727 AAGCGTGAGACCAAT AAAAAAACCTGCC ATT GGCAGGTTTTTTA TTATCGATGCGAATC TERM 3817 3180741 - 3180727 - T 100 -11.4 -5.85737 | opp_overlap 3180720 3180727, overlap 3180719 AGACCAATAAAAAAA CCTGCC ATT GGCAGG TTTTTTATTATCGAT TERM 3818 3180727 - 3180741 + T 100 -11.4 -5.56673 | opp_overlap 3180727 3180719, overlap 3180720 AGACCAATAAAAAAA CCTGCC ATT GGCAGG TTTTTTATTATCGAT cysS 3182183 - 3180798 - | cysteinyl-tRNA synthetase TERM 3819 3182553 - 3182539 - g 70 -8.6 -3.762 | opp_overlap 3182533, overlap 3182531 AAACGAAGCCAACAA CGGTTT ATC AAACCG TACTGGTACTATCGC Shewana3_2665 3182318 - 3182809 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type Shewana3_2666 3182819 - 3183538 + | UDP-2,3-diacylglucosamine hydrolase Shewana3_2667 3184417 - 3183647 - | tRNA hydroxylase TERM 3820 3183887 - 3183872 - G 77 -10.4 -3.57561 | overlap 3183856 CGCTAATTTGGCAAA GCGCTC ACAG GAGCGC GCCTCAATGTACGCT TERM 3821 3184777 - 3184742 - g 76 -8.3 -4.22214 | overlap 3184768 ACTCATCCAAAACAA GAGTGGCACGCGATT GAGAAG AATCACGAGGCACTC AAAAGTAGTTTAAGT Shewana3_2668 3184697 - 3185293 + | hypothetical protein TERM 3822 3185424 - 3185386 - T 70 -3.9 -4.80396 | gap 1, opp_overlap 3185391, overlap 3185391 TAAAAGATGTAAAAA GCAAAGGCCCTTAG-GTT TTAT ATCACTAAGGGCCTTTTT ATTCGTTGATGCTGT TERM 3823 3185391 - 3185419 + T 100 -8.2 -5.20534 | gap 1, opp_overlap 3185386 3185391 GATGTAAAAAGCAAA GGCCCTTAG-GTT TTAT ATCACTAAGGGCC TTTTTATTCGTTGAT TERM 3824 3185419 - 3185391 - T 82 -8.2 -4.33653 | gap 1, opp_overlap 3185391, overlap 3185386 GATGTAAAAAGCAAA GGCCCTTAG-GTT TTAT ATCACTAAGGGCC TTTTTATTCGTTGAT Shewana3_2669 3187173 - 3185503 - | glutaminyl-tRNA synthetase TERM 3825 3185799 - 3185818 + g 71 -5 -4.57073 | gap 1 GGATTACGCCTTTTA CCTTG-CGA CCA TCGGCAGGG TTTTTACCCAAGGTA TERM 3826 3187321 - 3187289 - R 72 -6.4 -4.3586 | opp_overlap 3187290 3187292 3187297, overlap 3187292 3187297 GCATGGATAGTAAAA CAATAAAAGCAGCC ATGAA AGCTGCTTTTATCT TTGTCATTACTAAGC TERM 3827 3187290 - 3187320 + r 71 -7 -4.08144 | opp_overlap 3187289 3187292 3187297, overlap 3187292 3187297 CATGGATAGTAAAAC AATAAAAGCAGC CATGAAA GCTGCTTTTATC TTTGTCATTACTAAG TERM 3828 3187292 - 3187318 + r 78 -9.6 -3.63241 | opp_overlap 3187289 3187292 3187297, overlap 3187290 3187297 TGGATAGTAAAACAA TAAAAGCAGC CATGAAA GCTGCTTTTA TCTTTGTCATTACTA TERM 3829 3187318 - 3187292 - R 100 -10.3 -4.29302 | opp_overlap 3187292 3187290 3187297, overlap 3187289 3187297 TGGATAGTAAAACAA TAAAAGCAGCC ATGAA AGCTGCTTTTA TCTTTGTCATTACTA TERM 3830 3187313 - 3187297 - R 85 -5.8 -5.10656 | opp_overlap 3187297 3187292 3187290, overlap 3187292 3187289 AGTAAAACAATAAAA GCAGCC ATGAA AGCTGC TTTTATCTTTGTCAT TERM 3831 3187297 - 3187313 + r 75 -5.1 -4.85822 | opp_overlap 3187292 3187289 3187297, overlap 3187292 3187290 AGTAAAACAATAAAA GCAGC CATGAAA GCTGC TTTTATCTTTGTCAT Shewana3_2670 3189651 - 3187357 - | ferrous iron transport protein B Shewana3_2671 3189883 - 3189644 - | FeoA family protein TERM 3832 3190358 - 3190341 - g 76 -8.5 -4.24002 | opp_overlap 3190341 GGTTAAAGTTCAAAA GCATAAC TCAG GTTATGC TTGCTGTGATGTTAT Shewana3_2672 3190310 - 3191275 + | cytochrome C family protein TERM 3833 3192302 - 3192271 - g 71 -5.8 -4.3129 | overlap 3192272 CAGGTATCAGCAAAA TGTCACAGGATGAA GCTT TTCTTCCCGCGACC ATTAATGGCCCCTCC TERM 3834 3193355 - 3193328 - g 73 -5.6 -4.67038 | gap 1, opp_overlap 3193334, overlap 3193331 CTGGCAAAACCAAAA CACCACTTGGGAC ACA GTCCCCAATG-TG CTCAGTTTTGGCGAT Shewana3_2673 3191289 - 3193427 + | outer membrane protein, putative TERM 3835 3193573 - 3193555 - g 79 -13.2 -2.73681 | CAGTGACGGTAACGA TGGCTCAC CCG GTGAGCCA GGTAAACCACCCGCG Shewana3_2674 3193463 - 3195382 + | decaheme cytochrome c MtrF TERM 3836 3196013 - 3196003 - g 74 -2.4 -5.10029 | opp_overlap 3196003 ATCAATGCCAAAAAA GAGC CAG GCAC TGTTCCATCAGGTGT Shewana3_2675 3195628 - 3197802 + | decaheme cytochrome c TERM 3837 3197843 - 3197863 + F 100 -11.2 -5.79595 | opp_overlap 3197843 GAGACTGGACAAAAA GAGAGAGG TCCCC CCTCTCTC TTTTTTATTTTCCAC TERM 3838 3197863 - 3197843 - f 100 -11.2 -4.8667 | opp_overlap 3197843 GAGACTGGACAAAAA GAGAGAGG TCCCC CCTCTCTC TTTTTTATTTTCCAC Shewana3_2676 3198135 - 3200087 + | decaheme cytochrome c TERM 3839 3200100 - 3200117 + F 100 -12.7 -4.3351 | opp_overlap 3200100, overlap 3200092 TAATTTGCCCAAGCA GGGGGAG TTCG CTCCCCC TTTCTTGAATTTTGT TERM 3840 3200117 - 3200100 - f 88 -12.7 -2.71681 | opp_overlap 3200092 3200100 TAATTTGCCCAAGCA GGGGGAG TTCG CTCCCCC TTTCTTGAATTTTGT TERM 3841 3200389 - 3200363 - g 80 -3.1 -5.24531 | overlap 3200365 3200376 ATGTGCCATAAAAAA TCCGAAAAAGT TATGG ACCTTTTCAAA GGTGTCCACGGCGCC Shewana3_2677 3200156 - 3201145 + | cytochrome C family protein Shewana3_2678 3201158 - 3203245 + | outer membrane protein precursor MtrB TERM 3842 3203269 - 3203283 + F 100 -12.8 -5.57396 | opp_overlap 3203269 TATTGATAGTCAAAA GCCCGC ACT GCGGGC TTTTTTATTGGTTAT TERM 3843 3203283 - 3203269 - f 100 -12.8 -4.24204 | opp_overlap 3203269 TATTGATAGTCAAAA GCCCGC ACT GCGGGC TTTTTTATTGGTTAT Shewana3_2679 3203471 - 3204085 + | hypothetical protein TERM 3844 3204444 - 3204423 - g 70 -4.3 -4.67234 | overlap 3204427 ACGCAATGGTAAAAA GCAGGGTGA TAAG CCACCACGC CCTGAATGCGCCGCA Shewana3_2680 3204085 - 3204798 + | phage SPO1 DNA polymerase domain-containing protein TERM 3845 3204837 - 3204823 - T 100 -8.5 -5.11112 | AAATCCCAATAAAAA GCCCC ATTAA GGGGC TTCGAAATTAGAACT Shewana3_2681 3206428 - 3204926 - | vibriolysin TERM 3846 3205002 - 3205027 + g 88 -10.3 -4.16842 | GAACCTTTGGCACTC GCCGCCTGCTG AACC CCGCAGGCCGC TTTGTTAAAGGTCGA Shewana3_2682 3206661 - 3207893 + | CdaR family transcriptional regulator Shewana3_2683 3208133 - 3209131 + | catalase domain-containing protein TERM 3847 3209231 - 3209194 - f 100 -20.9 -2.54523 | overlap 3209184 3209226 3209227 TTACATTCGAATTCA CGGCCATTATTTTGTGC GCAC GCACAAAATAATGGCCA ATTCGGCCCGTAATT TERM 3848 3209341 - 3209305 - f 73 -8.2 -3.60296 | opp_overlap 3209301 TAGGCTGACCTTAAA GCAACCTTTATTTGAC TTGGG GTTAAATAAAGACTGC GCCCTACAAAAACAG Shewana3_2684 3209402 - 3210760 + | gluconate transporter TERM 3849 3210749 - 3210767 + F 93 -8.8 -4.51097 | opp_overlap 3210744, overlap 3210737 TATGTACTAAGCTTA GTGCTGCT CTA AGCCGCAC TTTTCTCATCCTTGG TERM 3850 3210958 - 3210934 - g 73 -5.5 -4.64766 | overlap 3210935 3210936 GTGAGATTGTAAAAA TCCCCGTCGCC GAT GGCGGCGAAGG CACTGTGCAATCTAT TERM 3851 3211504 - 3211464 - g 71 -5.4 -4.56597 | overlap 3211465 TTTGGTCCGCAAAAA GGCGCAACATCCGAGATG GTGAG CACCTTAGATGCTGCACT AAGTCACTATGCCGA Shewana3_2685 3210819 - 3211964 + | glycerate kinase TERM 3852 3212001 - 3212026 + F 100 -11.9 -4.38927 | opp_overlap 3212005, overlap 3212005 GCTCACGACATACAC CCAAGGCGCTA TTCA TAGCGCCTTTG TTTATTCTGTAACCC TERM 3853 3212005 - 3212022 + F 100 -11.3 -4.76087 | opp_overlap 3212005, overlap 3212001 ACGACATACACCCAA GGCGCTA TTCA TAGCGCC TTTGTTTATTCTGTA TERM 3854 3212022 - 3212005 - f 84 -11.3 -3.18065 | opp_overlap 3212005 3212001 ACGACATACACCCAA GGCGCTA TTCA TAGCGCC TTTGTTTATTCTGTA Shewana3_2686 3212207 - 3213856 + | pyridoxal-dependent decarboxylase TERM 3855 3213907 - 3213940 + T 100 -16.9 -3.54424 | opp_overlap 3213913, overlap 3213913 ATACAGAGTGTTAAT CACAAACAGCCGCAA ATAT TTGCGGCTGTTTTTG TTTGCAAAGCTGGGA TERM 3856 3213913 - 3213934 + T 100 -14.5 -5.27335 | opp_overlap 3213913, overlap 3213907 AGTGTTAATCACAAA CAGCCGCAA ATAT TTGCGGCTG TTTTTGTTTGCAAAG TERM 3857 3213934 - 3213913 - T 100 -14.5 -4.05714 | opp_overlap 3213913 3213907 AGTGTTAATCACAAA CAGCCGCAA ATAT TTGCGGCTG TTTTTGTTTGCAAAG Shewana3_2687 3215249 - 3214353 - | NAD-dependent DNA ligase TERM 3858 3215704 - 3215714 + H 73 -8.2 -3.6215 | opp_overlap 3215693 ATAAGGACGCTTAAT GCCC AAG GGGC TTTCAACTCCGTTGG TERM 3859 3215780 - 3215802 + H 72 -7.6 -3.88823 | overlap 3215776 AGTCCTCCTTGGTCG GGTGTGGGGT GAA GCCCCACGAC TTTGACTTTGCTCTT TERM 3860 3215925 - 3215951 + H 87 -5.1 -5.49579 | gap 2, overlap 3215927 AGGCTTAATGGGATT CGGGG-CG-GGGG AAG CCCCACGGCCTTG TTTTGTTTTTTATGC TERM 3861 3215927 - 3215948 + H 91 -7.9 -4.75934 | gap 1, overlap 3215925 GCTTAATGGGATTCG GGGCG-GGGG AAG CCCCACGGCC TTGTTTTGTTTTTTA TERM 3862 3216434 - 3216420 - g 70 -10 -3.19653 | opp_overlap 3216420 3216419 3216417 3216422, overlap 3216412 3216411 GGACAATGGCAGCAA GAGCAG CCC CTGCTC GTCTTATTTGGCTTT Shewana3_2688 3216033 - 3216488 + | hypothetical protein TERM 3863 3216583 - 3216570 - f 71 -6.7 -4.21631 | AAGCCATTGAATAAA GGTGT TAAT ACACC TCACAAGACAAGGAA Shewana3_2689 3216571 - 3216978 + | hypothetical protein Shewana3_2690 3217121 - 3217888 + | short chain dehydrogenase Shewana3_2691 3217902 - 3218795 + | DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada Shewana3_2692 3218902 - 3219576 + | streptogramin A acetyl transferase TERM 3864 3219692 - 3219682 - f 71 -6.8 -4.17762 | opp_overlap 3219682 3219681 TATCTGGCAAAACAA GCGT TAA ACGC CTTGGTCTTGATAAA Shewana3_2693 3219746 - 3220582 + | AraC family transcriptional regulator TERM 3865 3220983 - 3220996 + G 76 -3.1 -5.06816 | gap 1, overlap 3220985 TACCACTAAAATGGC GCCTCA CTC TG-GGC TTTTTATTGACCGAT Shewana3_2694 3220649 - 3221416 + | AzlC family protein TERM 3866 3221495 - 3221517 + G 74 -4.2 -4.8143 | gap 1, opp_overlap 3221485, overlap 3221495 3221510 CCAAACTGCCGCTAA GG-CTGAGT AAAAAC ACTCAGACC TTTTTGAGTTATTCG Shewana3_2695 3221413 - 3221715 + | branched-chain amino acid transport Shewana3_2696 3223063 - 3221705 - | major facilitator transporter Shewana3_2697 3224369 - 3223185 - | N-acetylglucosamine 6-phosphate deacetylase Shewana3_2698 3225285 - 3224359 - | N-acetylglucosamine kinase TERM 3867 3224993 - 3224966 - G 76 -8.4 -4.16943 | overlap 3224968 TCGGAGAGGGCAAAA CAGCGGCAATCA TTAC CGATTGCCACGG TCCGATTGAGCAACT TERM 3868 3224991 - 3224968 - G 77 -9.6 -3.68378 | overlap 3224966 GGAGAGGGCAAAACA GCGGCAATCA TTAC CGATTGCCAC GGTCCGATTGAGCAA Shewana3_2699 3226466 - 3225306 - | sugar isomerase (SIS) Shewana3_2700 3227760 - 3226474 - | tagatose-bisphosphate aldolase noncatalytic subunit Shewana3_2701 3229136 - 3227766 - | oxidoreductase domain-containing protein Shewana3_2702 3229934 - 3229149 - | DeoR family transcriptional regulator TERM 3869 3229350 - 3229361 + g 76 -5.8 -4.60041 | ACACATCATTCGGTT GAGG CTGG CCTC TTTTTCAAAGTGAGT TERM 3870 3230321 - 3230289 - g 79 -12 -3.27476 | gap 1 ACTCTTAACCACCAA GCCTGCCGCGATTGC CCTA GCTATCGCAGC-GGC TCTGACAGCAACTCA Shewana3_2703 3230269 - 3233124 + | TonB-dependent receptor TERM 3871 3233174 - 3233150 - T 100 -15.9 -4.01101 | opp_overlap 3233150 3233154, overlap 3233154 TAAATTTAACAACAA TAAAGCCACTC AAT GAGTGGCTTTA TTTTTCAGCTTCACG TERM 3872 3233150 - 3233174 + T 100 -15.9 -4.66833 | opp_overlap 3233150 3233154, overlap 3233154 TAAATTTAACAACAA TAAAGCCACTC AAT GAGTGGCTTTA TTTTTCAGCTTCACG TERM 3873 3233170 - 3233154 - T 100 -12.3 -4.57882 | opp_overlap 3233154 3233150, overlap 3233150 TTTAACAACAATAAA GCCACTC AAT GAGTGGC TTTATTTTTCAGCTT TERM 3874 3233154 - 3233170 + T 100 -12.3 -4.88293 | opp_overlap 3233150 3233154, overlap 3233150 TTTAACAACAATAAA GCCACTC AAT GAGTGGC TTTATTTTTCAGCTT Shewana3_2704 3233870 - 3233172 - | helix-turn-helix, type 11 domain-containing protein Shewana3_2705 3234429 - 3233980 - | transcription activator, effector binding TERM 3875 3234587 - 3234566 - R 95 -12.3 -3.28146 | AAAAATCAGTACCAA GAGCCGTGC CAAG GCACGACTC TGCAGGGTTTACATT Shewana3_2706 3234984 - 3234601 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3876 3235101 - 3235068 - R 100 -12.6 -5.01823 | opp_overlap 3235071, overlap 3235071 ACAACAAGAATAAAA CAAGGCTACTGACA ACATCA TGTCAGTAGCCTTT GAGTGAAGCGATTTT TERM 3877 3235071 - 3235098 + r 100 -14.3 -3.64822 | opp_overlap 3235071 3235068 ACAAGAATAAAACAA GGCTACTGACA ACATCA TGTCAGTAGCC TTTGAGTGAAGCGAT TERM 3878 3235098 - 3235071 - R 100 -14.3 -4.55653 | opp_overlap 3235071, overlap 3235068 ACAAGAATAAAACAA GGCTACTGACA ACATCA TGTCAGTAGCC TTTGAGTGAAGCGAT Shewana3_2707 3236858 - 3235137 - | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 3879 3235961 - 3235974 + g 79 -6.7 -4.74103 | overlap 3235956 CATTGGCACAGGCGA GCATG GCGC CATGC TTTTTCGCTTCGGCA Shewana3_2708 3237436 - 3237131 - | hypothetical protein TERM 3880 3237827 - 3237866 + r 95 -12.3 -3.24329 | opp_overlap 3237831 3237837, overlap 3237831 3237837 CATCTTTGGGATAAC CGAATAAAAACTGGCGC ACTATG GCGCCAGTTTTTGCTTG TATTGATTGGGGCTA TERM 3881 3237862 - 3237831 - R 84 -11.7 -3.23274 | opp_overlap 3237827 3237831 3237837, overlap 3237837 TTTGGGATAACCGAA TAAAAACTGGCGC ACTATG GCGCCAGTTTTTG CTTGTATTGATTGGG TERM 3882 3237831 - 3237862 + r 95 -13.9 -2.85147 | opp_overlap 3237831 3237837, overlap 3237827 3237837 TTTGGGATAACCGAA TAAAAACTGGCGC ACTATG GCGCCAGTTTTTG CTTGTATTGATTGGG TERM 3883 3237856 - 3237837 - R 100 -10.7 -5.14645 | opp_overlap 3237837 3237831 3237827, overlap 3237831 ATAACCGAATAAAAA CTGGCGC ACTATG GCGCCAG TTTTTGCTTGTATTG TERM 3884 3237837 - 3237856 + r 100 -10.7 -4.99056 | opp_overlap 3237831 3237837, overlap 3237831 3237827 ATAACCGAATAAAAA CTGGCGC ACTATG GCGCCAG TTTTTGCTTGTATTG Shewana3_2709 3239454 - 3237925 - | hypothetical protein TERM 3885 3238494 - 3238507 + g 82 -3.8 -5.28983 | GTCCAAGGGGTGAGA TCCG GTTCCA CGGA TTTTTCTCTTTTGCC TERM 3886 3238900 - 3238910 + g 74 -6.8 -4.35518 | ATAAAAGCCTACAGC CCAC ATG GTGG TTTTAATATCGCCTT TERM 3887 3239269 - 3239241 - G 72 -3.7 -4.75174 | opp_overlap 3239241, overlap 3239243 CACTTAACTGAAAAA TCGGCCCCTTCCA ACC TGGATAGGCCTGA TTGATGATTACTTGG TERM 3888 3239595 - 3239572 - R 100 -14 -5.24989 | GTAGATAGTAAAAAA GCCATTTAGC ATGG GCTAAATGGC CTTGAGACATCAAAA Shewana3_2710 3240599 - 3239622 - | integral membrane protein TerC TERM 3889 3240640 - 3240623 - R 79 -3.3 -5.2696 | overlap 3240625 CTAAAACCTAAAAAA TACCGAG TTTT CTCGGCT CCATCGCCACATTCG TERM 3890 3240638 - 3240625 - R 79 -8.1 -4.24654 | overlap 3240623 AAAACCTAAAAAATA CCGAG TTTT CTCGG CTCCATCGCCACATT TERM 3891 3240852 - 3240875 + r 71 -8.2 -3.53012 | opp_overlap 3240851, overlap 3240833 3240832 GTGAGTAAAATAATC GCGTGAGT TCATCACT ACTCACGC TTTAGCAGACACAAA TERM 3892 3241104 - 3241072 - R 89 -6.3 -5.33848 | gap 1, overlap 3241073 3241076 ATGAGAAGTAAAAAA CTATTCGCGC-CCG AGTAGA CGGCGCGCGACTAA TACCACAAGATGCAG TERM 3893 3241103 - 3241073 - R 72 -7.6 -3.78682 | gap 1, overlap 3241072 3241076 TGAGAAGTAAAAAAC TATTCGCGC-CCG AGTAGA CGGCGCGCGACTA ATACCACAAGATGCA Shewana3_2711 3241356 - 3241072 - | hypothetical protein Shewana3_2712 3242567 - 3241383 - | 3-beta hydroxysteroid dehydrogenase/isomerase Shewana3_2713 3244479 - 3242653 - | peptide synthase TERM 3894 3244265 - 3244277 + g 79 -7.7 -4.55295 | GCATTGAGCGCGAAG GCGAT GGC ATCGC TTTGTTTATCGAGGC Shewana3_2714 3245441 - 3244479 - | alpha/beta hydrolase fold TERM 3895 3245593 - 3245555 - R 100 -9.7 -5.03945 | gap 1, overlap 3245546 CAATAAGCATAAAAA TGCCCTAGCAAAC-CTTG CTCT CAAGCGTCGGCTAAGGCA GATAACAATCTTGGA Shewana3_2715 3246661 - 3245612 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 3896 3246691 - 3246707 + r 89 -7.3 -5.03201 | opp_overlap 3246686 3246691, overlap 3246686 CGCTCACTAAGATCA CTGATCT TTT AGGTCAG TTTTTAGTTGTTATT Shewana3_2716 3248286 - 3246916 - | hypothetical protein Shewana3_2717 3248618 - 3248851 + | hypothetical protein TERM 3897 3248839 - 3248868 + T 100 -12.3 -4.45517 | opp_overlap 3248846, overlap 3248846 CGAGGCTCGACTTGC GAAAAAAGCCTGA AAGT TCAGGCTTTTTAC TTTTATCACTACTTT TERM 3898 3248846 - 3248861 + T 100 -9 -5.1417 | opp_overlap 3248846, overlap 3248839 CGACTTGCGAAAAAA GCCTGA AAGT TCAGGC TTTTTACTTTTATCA TERM 3899 3248861 - 3248846 - T 100 -9 -5.02074 | opp_overlap 3248839 3248846 CGACTTGCGAAAAAA GCCTGA AAGT TCAGGC TTTTTACTTTTATCA Shewana3_2718 3249239 - 3248877 - | hypothetical protein TERM 3900 3249270 - 3249306 + r 76 -9.6 -3.51934 | gap 1, opp_overlap 3249270 3249271, overlap 3249268 3249271 ATGACCCCTAAAAAA GTGCCCCAAGG-ATAAT CCGA GTTATTCCTTGGGGCAA TATTTCTGACACGCA TERM 3901 3249306 - 3249270 - R 100 -8.9 -5.03715 | gap 1, opp_overlap 3249270 3249268 3249271, overlap 3249271 ATGACCCCTAAAAAA GTGCCCCAAGG-ATAA TCCGAG TTATTCCTTGGGGCAA TATTTCTGACACGCA TERM 3902 3249271 - 3249305 + r 91 -13.1 -2.70946 | gap 1, opp_overlap 3249271 3249270, overlap 3249270 3249268 TGACCCCTAAAAAAG TGCCCCAAGG-ATAAT CCGA GTTATTCCTTGGGGCA ATATTTCTGACACGC TERM 3903 3249305 - 3249271 - R 100 -12.4 -3.61506 | gap 1, opp_overlap 3249270 3249268 3249271, overlap 3249270 TGACCCCTAAAAAAG TGCCCCAAGG-ATAA TCCGAG TTATTCCTTGGGGCA ATATTTCTGACACGC Shewana3_2719 3251304 - 3249328 - | choline/carnitine/betaine transporter TERM 3904 3251893 - 3251873 - R 100 -9.7 -5.32882 | GATCAGCATAAAAAA TGGCGACCT ATT AAGCCGCCA TCGGATTGTATCACA TERM 3905 3251927 - 3251913 - R 70 -2.8 -4.91511 | ATTGTATCACAAAAA CGTC TCTATTT GACG CAAAAAACTGACGCA Shewana3_2720 3252563 - 3251958 - | hypothetical protein TERM 3906 3252615 - 3252597 - H 82 -2.4 -5.63504 | overlap 3252598 3252608 AATGGGATAAAAAAA GGCATAAA TTA TTTACGCT AAAAAGCGCGTTAAA Shewana3_2721 3252719 - 3253114 + | glyoxalase/bleomycin resistance protein/dioxygenase Shewana3_2722 3254054 - 3253167 - | LysR family transcriptional regulator Shewana3_2723 3254148 - 3255077 + | hypothetical protein TERM 3907 3255095 - 3255125 + F 100 -16.4 -3.1247 | opp_overlap 3255098 3255102, overlap 3255098 3255102 AATCCTCAAATTACG TAATAAAGGCGGGA ACT TCTCGCCTTTATTA TTCGCTATAGCGCCT TERM 3908 3255098 - 3255122 + F 100 -13.7 -3.70773 | opp_overlap 3255098 3255102, overlap 3255095 3255102 CCTCAAATTACGTAA TAAAGGCGGGA ACT TCTCGCCTTTA TTATTCGCTATAGCG TERM 3909 3255122 - 3255098 - f 84 -11.5 -3.1634 | opp_overlap 3255095 3255098 3255102, overlap 3255102 CCTCAAATTACGTAA TAAAGGCGGGA ACT TCTCGCCTTTA TTATTCGCTATAGCG TERM 3910 3255102 - 3255118 + F 100 -10.1 -4.47456 | opp_overlap 3255102 3255098, overlap 3255098 3255095 AAATTACGTAATAAA GGCGGGA ACT TCTCGCC TTTATTATTCGCTAT TERM 3911 3255118 - 3255102 - f 76 -7.9 -4.23647 | opp_overlap 3255098 3255095 3255102, overlap 3255098 AAATTACGTAATAAA GGCGGGA ACT TCTCGCC TTTATTATTCGCTAT TERM 3912 3255359 - 3255347 - f 78 -10.5 -3.38522 | overlap 3255322 3255345 CATGGATGTGAAAGA GCGGC CAT GCCGC CAACGGTCACAGTTG TERM 3913 3255678 - 3255708 + F 72 -9.9 -2.80821 | gap 1, opp_overlap 3255687, overlap 3255687 GTTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TGGTGTATTTGGCAG TERM 3914 3255687 - 3255698 + F 81 -7.2 -4.60487 | opp_overlap 3255687, overlap 3255678 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 3915 3255698 - 3255687 - f 73 -7.2 -4.09511 | opp_overlap 3255687 3255678 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG Shewana3_2724 3255834 - 3256268 + | GCN5-related N-acetyltransferase TERM 3916 3256337 - 3256288 - f 75 -7.1 -4.30719 | gap 1, opp_overlap 3256287 3256335, overlap 3256289 3256298 CGGGCTTATAACAAA CGCCTCAAGAGGGACTGTCAACGC GTG GCGTTTCCAGTCCCA-TTGAGCTG CGGTGGTTGCAGTTG TERM 3917 3256328 - 3256298 - f 100 -14 -3.05562 | opp_overlap 3256287, overlap 3256289 3256288 ACAAACGCCTCAAGA GGGACTGTCAACGC GTG GCGTTTCCAGTCCC ATTGAGCTGCGGTGG Shewana3_2725 3256420 - 3257145 + | hypothetical protein Shewana3_2726 3257285 - 3258676 + | hypothetical protein Shewana3_2727 3258711 - 3259052 + | hypothetical protein Shewana3_2728 3259143 - 3259592 + | hypothetical protein Shewana3_2729 3259609 - 3260208 + | hypothetical protein TERM 3918 3260241 - 3260273 + F 93 -12.7 -3.22409 | opp_overlap 3260213, overlap 3260235 GCTCACTGCGTTCGC TGGACAGTCAAACGC TAC GCGTTTGCCTGCCCG TTAGCTTAATCGTTA TERM 3919 3260431 - 3260451 + G 82 -11.3 -3.65902 | overlap 3260427 CCAGTTGGCAGTTCA TGCATTGAA TTC TTCAATGCA TTTGCATCAAATCAC Shewana3_2730 3260288 - 3260740 + | hypothetical protein TERM 3920 3260785 - 3260773 - T 75 -9.1 -3.63805 | opp_overlap 3260759 ACGTGACAGCCCAAA GCTGC TTC GCAGC TCCGGCAGCACGTTA TERM 3921 3260841 - 3260866 + T 71 -4.1 -4.82901 | gap 1, opp_overlap 3260841, overlap 3260842 TTTATCCGAAAATGA CGAGTTAGAGTT AAT AAC-CTAACTCA TTTTTGTCCCAAAGC TERM 3922 3261125 - 3261092 - T 100 -11.8 -4.80455 | opp_overlap 3261098, overlap 3261098 CAGTTAAACACAAAA CAAAAACGCTCTGC GGTTAG GCAGAGCGTTTGCG GATAAAGCCGTGTGA TERM 3923 3261098 - 3261119 + T 89 -11.6 -3.57144 | opp_overlap 3261092 3261098 AACACAAAACAAAAA CGCTCTGC GGTTAG GCAGAGCG TTTGCGGATAAAGCC TERM 3924 3261119 - 3261098 - T 100 -11.6 -5.60556 | opp_overlap 3261098, overlap 3261092 AACACAAAACAAAAA CGCTCTGC GGTTAG GCAGAGCG TTTGCGGATAAAGCC Shewana3_2731 3261861 - 3261151 - | transcriptional regulator PhoU TERM 3925 3261459 - 3261472 + g 71 -6.7 -4.21462 | opp_overlap 3261456 GCAGCATACGAATCG CATGG CGGC CCATG TTTTCAATGCTGACT Shewana3_2732 3262807 - 3261989 - | phosphate ABC transporter, ATPase subunit Shewana3_2733 3264499 - 3262841 - | phosphate ABC transporter, inner membrane subunit PstA TERM 3926 3263442 - 3263494 + g 83 -5.6 -5.09173 | gap 2, opp_overlap 3263441 CCGTACACAATCGAT GGCACACCCGCTAAGTTGATTACCGC AAT GCGG-A-TCATCTTAGTGATTGGGCC TTTTTTGGCATATTC Shewana3_2734 3266817 - 3264559 - | binding-protein-dependent transport systems inner membrane component Shewana3_2735 3267017 - 3267517 + | ACT domain-containing protein TERM 3927 3267541 - 3267563 + T 100 -8.3 -5.31275 | opp_overlap 3267541 3267542, overlap 3267542 ACCTTTAACAAAAAA CGCCGCGGG CAAAA CCTGCGGCA TTTTTTATGGTGAGC TERM 3928 3267563 - 3267541 - T 100 -9 -5.45652 | opp_overlap 3267541 3267542, overlap 3267542 ACCTTTAACAAAAAA CGCCGCGGGC AAA ACCTGCGGCA TTTTTTATGGTGAGC TERM 3929 3267542 - 3267562 + T 100 -11.8 -3.78042 | opp_overlap 3267541 3267542, overlap 3267541 CCTTTAACAAAAAAC GCCGCGGG CAAAA CCTGCGGC ATTTTTTATGGTGAG TERM 3930 3267562 - 3267542 - T 86 -10.3 -3.86307 | opp_overlap 3267542 3267541, overlap 3267541 CCTTTAACAAAAAAC GCCGCGGGC AAA ACCTGCGGC ATTTTTTATGGTGAG Shewana3_2736 3268465 - 3267578 - | hypothetical protein TERM 3931 3267753 - 3267773 + g 71 -7.5 -4.07568 | CTTAAAATAATCGCC GCGTGCGCA GGA TGAGCATGC TTTTGCGCCAGCACC Shewana3_2737 3269721 - 3268561 - | putative esterase TERM 3932 3269523 - 3269509 - G 70 -4.2 -4.67755 | ATAGCTACTTAAAAA GCCG ACATTCG CGGC AATATGCTCAAATTG TERM 3933 3270015 - 3269987 - g 78 -3.8 -5.10029 | gap 1 AGGAACGCTAAAAAA GCTGCGCGCACAC TTAG ATGAG-GCGCAAC AAGTACAGTATCAAC Shewana3_2738 3269967 - 3270791 + | hypothetical protein Shewana3_2739 3271044 - 3271616 + | hypothetical protein TERM 3934 3271635 - 3271614 - T 73 -5.1 -4.74539 | opp_overlap 3271617, overlap 3271617 AATAAGGCAAGAAAA TAAGCCAGC TTAA GCTAGCTTG ATTAGGAATAGCGGC TERM 3935 3271632 - 3271617 - T 76 -6.8 -4.45817 | opp_overlap 3271617, overlap 3271614 AAGGCAAGAAAATAA GCCAGC TTAA GCTAGC TTGATTAGGAATAGC TERM 3936 3271641 - 3271689 + T 86 -11.8 -3.06302 | gap 1, opp_overlap 3271644 3271646 3271661, overlap 3271644 AGCTAGCTTGATTAG GAATAGCG-GCGTTGTGTAAAGC ATAA GCCCTACGCAACGCTCGCCATTC TTGGATAAGCCTGAT TERM 3937 3271686 - 3271644 - T 86 -12.1 -3.21416 | gap 1, opp_overlap 3271644 3271641, overlap 3271646 3271661 TAGCTTGATTAGGAA TAGCG-GCGTTGTGTAAAGC ATAA GCCCTACGCAACGCTCGCCA TTCTTGGATAAGCCT TERM 3938 3271644 - 3271686 + T 70 -7.7 -3.67775 | gap 1, opp_overlap 3271644 3271646 3271661, overlap 3271641 TAGCTTGATTAGGAA TAGCG-GCGTTGTGTAAAGC ATAA GCCCTACGCAACGCTCGCCA TTCTTGGATAAGCCT TERM 3939 3271684 - 3271646 - T 93 -12.5 -3.17051 | gap 1, opp_overlap 3271644 3271641, overlap 3271644 3271661 GCTTGATTAGGAATA GCG-GCGTTGTGTAAAGC ATAA GCCCTACGCAACGCTCGC CATTCTTGGATAAGC Shewana3_2740 3272140 - 3271742 - | hypothetical protein TERM 3940 3272299 - 3272269 - R 100 -15.6 -3.22951 | opp_overlap 3272275, overlap 3272270 3272272 3272275 TATATTCCCACAAGA GCATAAGGCGAGTA TCT TACTCGCCTTATGA GGATACCTTATGACA TERM 3941 3272298 - 3272270 - R 100 -19.1 -2.53449 | opp_overlap 3272275, overlap 3272269 3272272 3272275 ATATTCCCACAAGAG CATAAGGCGAGTA TCT TACTCGCCTTATG AGGATACCTTATGAC TERM 3942 3272296 - 3272272 - R 100 -15.9 -2.80252 | opp_overlap 3272275, overlap 3272270 3272269 3272275 ATTCCCACAAGAGCA TAAGGCGAGTA TCT TACTCGCCTTA TGAGGATACCTTATG TERM 3943 3272275 - 3272293 + r 100 -13.2 -3.3164 | opp_overlap 3272272 3272270 3272269 3272275 CCCACAAGAGCATAA GGCGAGTA TCT TACTCGCC TTATGAGGATACCTT TERM 3944 3272293 - 3272275 - R 100 -13.2 -3.54771 | opp_overlap 3272275, overlap 3272272 3272270 3272269 CCCACAAGAGCATAA GGCGAGTA TCT TACTCGCC TTATGAGGATACCTT Shewana3_2741 3273046 - 3272444 - | hypothetical protein TERM 3945 3273790 - 3273802 + G 73 -2.7 -5.03994 | overlap 3273794 GCCGCAAGTGGTCAC TATTG CCA CAGTA TTTTTATGTGTGGCC Shewana3_2742 3273362 - 3273955 + | lysine exporter protein LysE/YggA Shewana3_2743 3273983 - 3274531 + | hypothetical protein TERM 3946 3274575 - 3274562 - T 74 -6.7 -4.31837 | overlap 3274558 AATAAACCCAACAAA GCCTA AGCT TAGGC ATTGGGAAAGGTCGC Shewana3_2744 3275080 - 3274760 - | hypothetical protein TERM 3947 3276369 - 3276352 - g 79 -5.5 -5.00616 | opp_overlap 3276351 3276361 GGTCGTGGTAAAAAA GCCGTCA ACGA TGATGGC ATCTGTGTTGAAGTG Shewana3_2745 3275449 - 3277014 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 3948 3277034 - 3277071 + T 100 -18.1 -2.87881 | opp_overlap 3277045, overlap 3277045 TAGCCAAGATAATCC CAGTAAAAAAACCAGCA CTTG TGCTGGTTTTTTTATTG TCTATCGGAAGATTA TERM 3949 3277045 - 3277060 + T 100 -9 -5.9218 | opp_overlap 3277045, overlap 3277034 ATCCCAGTAAAAAAA CCAGCA CTTG TGCTGG TTTTTTTATTGTCTA TERM 3950 3277060 - 3277045 - T 100 -9 -5.52986 | opp_overlap 3277034 3277045 ATCCCAGTAAAAAAA CCAGCA CTTG TGCTGG TTTTTTTATTGTCTA Shewana3_2746 3277914 - 3277084 - | hypothetical protein TERM 3951 3278121 - 3278090 - R 100 -15.2 -2.81133 | overlap 3278077 CAGGCACTTAGCACA GTACCGAGCCTGCG CAGT CGCAAACTCGGCAC TCATGAGTAACTGAC Shewana3_2747 3279431 - 3278145 - | acetyl-CoA hydrolase/transferase TERM 3952 3279664 - 3279648 - R 72 -6.5 -4.27316 | TGCGTTAAGTCAAAA CTCGCAT TCA AAGCGAG AGCCGTTAATCCAAA Shewana3_2748 3280791 - 3279670 - | ABC-2 type transporter Shewana3_2749 3281821 - 3280781 - | ABC transporter related TERM 3953 3281069 - 3281113 + g 89 -10.6 -4.3739 | gap 1, overlap 3281067 CACTTCAACGACCCG CGCGCCCATGGC-CGCCATTA ATTG TTGCGGCGAGCCGTCGGCGCG TTTTATCCCACGCTC TERM 3954 3281460 - 3281494 + g 82 -7.8 -4.69664 | GCCACAAACTCGAGG TTTTCCCGCACCGACA GGT TGTCGTAGAGGGAGAA TTTTTGCGTCATATA Shewana3_2750 3282831 - 3281818 - | secretion protein HlyD family protein Shewana3_2751 3283529 - 3282831 - | TetR family transcriptional regulator Shewana3_2752 3284073 - 3283705 - | hypothetical protein TERM 3955 3285335 - 3285325 - g 86 -6.8 -5.0065 | TACCGATAAACAAAA GACC CGA GGTC AAGAACCATTAAGCC Shewana3_2753 3284552 - 3285409 + | hypothetical protein TERM 3956 3286492 - 3286510 + G 73 -8.8 -3.6608 | opp_overlap 3286488, overlap 3286487 TTGAGCTAAATGTCG CCGAGGCG GGA CGCTTTGG TTTAAGTGGCGTGCT Shewana3_2754 3285420 - 3286748 + | hypothetical protein TERM 3957 3286802 - 3286821 + F 100 -13.6 -5.54192 | CTTCCCAACCGTTTT GAGTGCCC ACCC GGGCACTC TTTTTTTAGCTTGAT TERM 3958 3286971 - 3286953 - f 77 -10.4 -3.11634 | overlap 3286955 TGCCACAGGACGCAA TATCGTCA CAA TGACGATA TAAAATTTACATTGA TERM 3959 3287540 - 3287505 - g 77 -12.6 -2.75074 | gap 1, opp_overlap 3287516 3287517, overlap 3287490 3287502 3287507 GCCAGCGCAACACCA CAGGCTTGGCAA-GGCG GCT CGCCGTTTCCAGGCCTG CAAGCCTACAGCGCC TERM 3960 3288091 - 3288101 + G 74 -6.8 -4.40804 | TAATTTTAAGTGCCT GTCG CAA CGAC TTTTATCCGCTGCTA TERM 3961 3288181 - 3288147 - g 70 -8.4 -3.65902 | opp_overlap 3288147 3288180 CTGATGGCAGGCAAA GCGCGCGGCGCCCATT TCG ACTTAGCGCCGCCCAC TCGCACCGAGCTGTT TERM 3962 3289005 - 3288995 - g 71 -6.8 -4.19953 | TATCGAAGCCGAAAA GCTG GCC CAGC AAAAACGCCTCGCCG TERM 3963 3289332 - 3289343 + G 76 -7.2 -4.43477 | overlap 3289336 CTGCTAAAAACCTTA GGCG CCAA CGCC TTTTGGTTGGGTCAG Shewana3_2755 3287109 - 3290351 + | transcriptional regulator Shewana3_2756 3290388 - 3290765 + | hypothetical protein TERM 3964 3290777 - 3290797 + F 93 -11.1 -4.21098 | opp_overlap 3290767 3290778, overlap 3290778 CTAATCTTTGTTGAA AGGGACTGC TGA GCAGTCCCC TTTTCCCCTTCCTGT TERM 3965 3290796 - 3290778 - f 100 -14.6 -3.53761 | opp_overlap 3290778 3290777 TAATCTTTGTTGAAA GGGACTGC TGA GCAGTCCC CTTTTCCCCTTCCTG TERM 3966 3290778 - 3290796 + F 100 -14.6 -3.11936 | opp_overlap 3290778, overlap 3290777 TAATCTTTGTTGAAA GGGACTGC TGA GCAGTCCC CTTTTCCCCTTCCTG TERM 3967 3291066 - 3291056 - f 82 -8.2 -4.38712 | GTCATCCTCAGAAAA GCGC CTA GCGC AGATGATTAAAGTTC Shewana3_2757 3291098 - 3292117 + | diguanylate cyclase TERM 3968 3292802 - 3292832 + G 70 -3.3 -4.77036 | opp_overlap 3292808, overlap 3292805 AACTTAATGCCAGCG CAATTAGCAAGAC AGGAA GTCATGCTGATTA TTTTTAATGATACCG TERM 3969 3292805 - 3292829 + G 71 -5 -4.49314 | opp_overlap 3292808, overlap 3292802 TTAATGCCAGCGCAA TTAGCAAGAC AGGAA GTCATGCTGA TTATTTTTAATGATA Shewana3_2758 3292178 - 3294868 + | FAD linked oxidase domain-containing protein Shewana3_2759 3295045 - 3295941 + | hypothetical protein TERM 3970 3296042 - 3296013 - T 100 -13.7 -3.2048 | opp_overlap 3296019, overlap 3296019 TTCAAACCTCAGCAA CAAAAACGCCGCT AATA AGCGGCGTTTTTT ATCTGAATACTTAAG TERM 3971 3296036 - 3296019 - T 100 -12.7 -5.1356 | opp_overlap 3296019, overlap 3296013 CCTCAGCAACAAAAA CGCCGCT AATA AGCGGCG TTTTTTATCTGAATA TERM 3972 3296019 - 3296036 + T 100 -12.7 -5.38047 | opp_overlap 3296013 3296019 CCTCAGCAACAAAAA CGCCGCT AATA AGCGGCG TTTTTTATCTGAATA Shewana3_2760 3297711 - 3296071 - | ABC transporter related TERM 3973 3298069 - 3298045 - R 100 -18.7 -3.92542 | opp_overlap 3298035 3298049 TTTATGTTCAAACAA TACAGCCCGCA AAA TGCGGGCTGTA TCAGGAGTACTTACT TERM 3974 3298049 - 3298065 + r 93 -13.7 -2.8805 | opp_overlap 3298045, overlap 3298035 TGTTCAAACAATACA GCCCGCA AAA TGCGGGC TGTATCAGGAGTACT Shewana3_2761 3300400 - 3298139 - | copper-translocating P-type ATPase TERM 3975 3300323 - 3300335 + g 71 -6.2 -4.4267 | ACTCACATTCGGCTC GGCC GCAAA GGCC TTTTCAATTTTGGCC Shewana3_2762 3300537 - 3300926 + | MerR family transcriptional regulator TERM 3976 3300982 - 3300965 - T 100 -8.4 -5.28176 | opp_overlap 3300954 3300965 CGCAGTTATAAAAAA GCCTGC TTGGAT GCAGGC TTTTTTATGGGGTTA TERM 3977 3300965 - 3300982 + T 100 -8.4 -5.27923 | opp_overlap 3300965, overlap 3300954 CGCAGTTATAAAAAA GCCTGC TTGGAT GCAGGC TTTTTTATGGGGTTA Shewana3_2763 3303062 - 3301029 - | peptidase S9 prolyl oligopeptidase TERM 3978 3303108 - 3303120 + r 80 -6.2 -4.90519 | overlap 3303106 CCGAAATATGCCACT GCCC TTTGC GGGC TTATTTTTTTACTTT Shewana3_2764 3303363 - 3303121 - | hypothetical protein TERM 3979 3303522 - 3303547 + r 86 -10.5 -3.84825 | opp_overlap 3303527, overlap 3303527 AATCTTTACCCAATA AAAAACCGAGC AAAT GCTCGGTTTTC TTTAATATCAATAAG TERM 3980 3303527 - 3303542 + r 100 -10.4 -4.97158 | opp_overlap 3303527, overlap 3303522 TTACCCAATAAAAAA CCGAGC AAAT GCTCGG TTTTCTTTAATATCA TERM 3981 3303542 - 3303527 - R 100 -10.4 -5.4833 | opp_overlap 3303527 3303522 TTACCCAATAAAAAA CCGAGC AAAT GCTCGG TTTTCTTTAATATCA fabG 3304329 - 3303571 - | 3-ketoacyl-(acyl-carrier-protein) reductase Shewana3_2766 3305251 - 3304349 - | 3-hydroxyisobutyrate dehydrogenase TERM 3982 3305120 - 3305137 + g 74 -11.3 -3.05816 | opp_overlap 3305118 GCTCGACACTAAGGC GCCTTGG TCGG CCAAGGC TTGCATGGCGGCTGG TERM 3983 3305313 - 3305342 + r 100 -15.1 -2.57192 | opp_overlap 3305313, overlap 3305305 TATTCCAGACAAAAA TGGCAGGCAAAGC GCTC GCTTTACCTGCCA TCGATTGGCTTAGCT TERM 3984 3305342 - 3305313 - R 100 -17.3 -4.9792 | opp_overlap 3305313 3305305 TATTCCAGACAAAAA TGGCAGGCAAAGC GCTC GCTTTACCTGCCA TCGATTGGCTTAGCT Shewana3_2767 3306503 - 3305352 - | enoyl-CoA hydratase/isomerase TERM 3985 3306039 - 3306020 - G 75 -9.2 -3.88787 | opp_overlap 3306007 CCACATCGGGATAAA GCCCGATG GTGA CTTCGGGC ATGGCGATACGGGAG TERM 3986 3306466 - 3306452 - G 76 -5.7 -4.59853 | opp_overlap 3306440 CTAAGGTTTGAAAAA CCACA TTTTG TGTGG TGGACGTGTGTGCAG Shewana3_2768 3307276 - 3306503 - | enoyl-CoA hydratase Shewana3_2769 3308498 - 3307341 - | acyl-CoA dehydrogenase domain-containing protein Shewana3_2770 3310161 - 3308662 - | methylmalonate-semialdehyde dehydrogenase [acylating] TERM 3987 3309393 - 3309403 + g 73 -3.2 -5.00616 | TCGCATCAGGCATGA TCAC GCA GTGG TTTTTTGCCCCAGCA TERM 3988 3309578 - 3309567 - G 71 -7.2 -4.12188 | overlap 3309568 GTACCAGCTGTAAAA CGCC CTTT GGCG CGCCCGCTTCGACAA Shewana3_2771 3311487 - 3310297 - | acetyl-CoA acetyltransferases TERM 3989 3311277 - 3311249 - G 74 -9.5 -3.60502 | overlap 3311239 3311260 ACAGACAGGGGTAAA CCTGCACCTAAGG TCG CCTGACGCGCAGG CGCTTGGCCCAGACC TERM 3990 3311806 - 3311779 - R 95 -12.8 -3.09272 | opp_overlap 3311778 3311781, overlap 3311776 3311781 ACAGTTTGAAAAGCA GAGTGACCTTGG TTAG CCAAAGCCACTC GATTTAAGAGAGCAG TERM 3991 3311804 - 3311781 - R 72 -9.6 -3.10091 | opp_overlap 3311778 3311781, overlap 3311779 3311776 AGTTTGAAAAGCAGA GTGACCTTGG TTAG CCAAAGCCAC TCGATTTAAGAGAGC TERM 3992 3311855 - 3311843 - R 72 -6.3 -4.33851 | AAACGCCAGAACAAA CACTA AAA TAGTG CTAAGCCGAATGCGT Shewana3_2772 3312820 - 3311879 - | homoserine O-succinyltransferase Shewana3_2773 3313324 - 3312890 - | hypothetical protein Shewana3_2774 3313409 - 3314185 + | short chain dehydrogenase family protein TERM 3993 3314218 - 3314254 + T 100 -13.9 -3.60627 | opp_overlap 3314222 3314229, overlap 3314222 3314229 CTTTATAAACTGCGA AAAACAAAAAAGGAGCC ACT GGCTCCTTTTTTGTTAC TTTAAAATCAGATGA TERM 3994 3314222 - 3314250 + T 100 -19.1 -3.53031 | opp_overlap 3314222 3314229, overlap 3314218 3314229 ATAAACTGCGAAAAA CAAAAAAGGAGCC ACT GGCTCCTTTTTTG TTACTTTAAAATCAG TERM 3995 3314250 - 3314222 - T 100 -19.1 -4.6526 | opp_overlap 3314218 3314222 3314229, overlap 3314229 ATAAACTGCGAAAAA CAAAAAAGGAGCC ACT GGCTCCTTTTTTG TTACTTTAAAATCAG TERM 3996 3314229 - 3314243 + T 100 -11.4 -5.59655 | opp_overlap 3314229 3314222, overlap 3314222 3314218 GCGAAAAACAAAAAA GGAGCC ACT GGCTCC TTTTTTGTTACTTTA TERM 3997 3314243 - 3314229 - T 100 -11.4 -5.93252 | opp_overlap 3314222 3314218 3314229, overlap 3314222 GCGAAAAACAAAAAA GGAGCC ACT GGCTCC TTTTTTGTTACTTTA Shewana3_2775 3314926 - 3314270 - | outer membrane protein W TERM 3998 3314934 - 3314950 + r 84 -3.7 -5.49568 | overlap 3314936 TTCATCATCATACTC CATATGT ACA ACATAGG TTTTTGTTTTACATT Shewana3_2776 3315972 - 3315385 - | hypothetical protein Shewana3_2777 3316721 - 3316071 - | maleylacetoacetate isomerase TERM 3999 3316446 - 3316468 + g 75 -10.5 -3.41341 | overlap 3316445 ATGGGCACGTTCAAG CGCCGATGC AGGCA GCAGCGGCG TCTTTGGATAAAGTT TERM 4000 3316770 - 3316754 - R 100 -13.7 -5.42259 | opp_overlap 3316751 3316750 TCATCCTGAAAAAAA CGGGGCT AAA AGCCCCG TCAATATTATCTGTC Shewana3_2778 3317792 - 3316806 - | fumarylacetoacetate (FAA) hydrolase Shewana3_2779 3319669 - 3318131 - | transcriptional regulator, TyrR TERM 4001 3318862 - 3318842 - G 73 -11.9 -2.52464 | opp_overlap 3318827 3318826 GCCTTGGCTAACGTA GCCAAAGAG TTC CTCTTCGGC GGCGCTATCGGGCAG TERM 4002 3319927 - 3319899 - R 82 -3.2 -5.54885 | opp_overlap 3319899 AACAGGAAGAAAAAA TCAGCGCT AACACACAATTAA AGCGCTGA TTTTAAAATTGAATT phhB 3320283 - 3319945 - | pterin-4-alpha-carbinolamine dehydratase TERM 4003 3320358 - 3320374 + r 70 -5.8 -4.33153 | AATTCGTTTTTAACG GTCAGC CATTA GCTGGC TTTCTTGGTCTTGGG phhA 3321181 - 3320366 - | phenylalanine 4-monooxygenase TERM 4004 3321426 - 3321413 - H 73 -3.8 -4.91459 | opp_overlap 3321413 TAATATGCAGAAAAA CCGA CAAATT TCGG TGTTTGCAAATGGCT Shewana3_2782 3321505 - 3322413 + | UDP-glucose pyrophosphorylase Shewana3_2783 3322413 - 3323426 + | UDP-galactose 4-epimerase TERM 4005 3323436 - 3323459 + F 90 -7.5 -5.21236 | gap 1, opp_overlap 3323436 GGCTAAGCGTCTAAA TGGCTTGCGG TAACT CC-CAAGCCA TTTTTATTATCCCTT Shewana3_2784 3323500 - 3323985 + | ferredoxin-type protein NapF Shewana3_2785 3324079 - 3324522 + | hypothetical protein Shewana3_2786 3324641 - 3325654 + | LysR family transcriptional regulator TERM 4006 3326114 - 3326129 + G 77 -10.4 -3.58726 | ATCTCTACTGGCACT GGCGCT CACC AGCGCC TTGTGTCTAACCGCC TERM 4007 3326216 - 3326171 - g 89 -14.7 -3.07029 | overlap 3326162 3326160 3326205 CAAAGACGGGCAAGA TGGTGCACCAGGTACCCCTGG CACA CCAGGAACACCCGGCACGCCA GGAACACCCGGACTT Shewana3_2787 3326079 - 3328367 + | decaheme cytochrome c TERM 4008 3328425 - 3328443 + T 100 -16 -5.4251 | opp_overlap 3328423 TCTCTGCAACTTATT GGGGCTCC TTC GGAGCCCC TTTTTTATGTATAGC Shewana3_2788 3329154 - 3328480 - | hypothetical protein Shewana3_2789 3329893 - 3329159 - | hypothetical protein TERM 4009 3329976 - 3329944 - R 100 -10 -4.77698 | gap 1, opp_overlap 3329950, overlap 3329950 TAACATCAAAAGAAA GCAA-AACGCATCGC CAAG GCGATGCGTTGTCAC GAGTGAAAACCTAAC TERM 4010 3329950 - 3329969 + r 100 -13.6 -3.30124 | opp_overlap 3329950 3329944 CAAAAGAAAGCAAAA CGCATCGC CAAG GCGATGCG TTGTCACGAGTGAAA TERM 4011 3329969 - 3329950 - R 100 -13.6 -4.76478 | opp_overlap 3329950, overlap 3329944 CAAAAGAAAGCAAAA CGCATCGC CAAG GCGATGCG TTGTCACGAGTGAAA Shewana3_2790 3330921 - 3330001 - | fructokinase Shewana3_2791 3331790 - 3330984 - | 3'(2'),5'-bisphosphate nucleotidase Shewana3_2792 3332076 - 3331780 - | hypothetical protein Shewana3_2793 3333232 - 3332138 - | dTDP-4-dehydrorhamnose reductase TERM 4012 3332376 - 3332400 + g 79 -11.5 -3.53343 | opp_overlap 3332375 3332376 GCTTTATCTAATAAC TTCAGTGCCAA GGC TTGGCGCTGGA TTTCGAGGGCAAATT TERM 4013 3333135 - 3333107 - G 72 -8.2 -3.83026 | overlap 3333108 CGCGTGCACACGAAA GGCGCGGCC-ATCG AAT CGATAAGCCGC-CC TGGCAAGCACTCGCA Shewana3_2794 3334028 - 3333270 - | putative hydrolase TERM 4014 3333894 - 3333880 - G 70 -2.7 -4.75063 | overlap 3333881 ACAAAATGCCAAAAA TGCGG TGCAT CCGCC ATCGCCGGGCCATGG Shewana3_2795 3337351 - 3334103 - | SNF2-related protein TERM 4015 3334404 - 3334414 + g 70 -8.2 -3.66028 | opp_overlap 3334403 CTGATTAAAAATACC GGCG TAT CGCC TTCTTGGAACTTATC TERM 4016 3337520 - 3337493 - R 76 -9.9 -3.32521 | gap 1, opp_overlap 3337494 3337497, overlap 3337495 3337497 ACGAGAGCCGGATAA CATACCCGCAGG GCTCG CCTGCGGGT-CG TTAGCTCATGCAAGC TERM 4017 3337519 - 3337495 - R 84 -11.4 -3.22951 | opp_overlap 3337494 3337497, overlap 3337493 3337497 GAGAGCCGGATAACA TACCCGCAGG GCTCG CCTGCGGGTC GTTAGCTCATGCAAG TERM 4018 3337517 - 3337497 - R 100 -14 -3.17622 | opp_overlap 3337494 3337497, overlap 3337495 3337493 GAGCCGGATAACATA CCCGCAGG GCTCG CCTGCGGG TCGTTAGCTCATGCA TERM 4019 3337497 - 3337517 + r 95 -14 -2.76263 | opp_overlap 3337497 3337495 3337493, overlap 3337494 GAGCCGGATAACATA CCCGCAGG GCTCG CCTGCGGG TCGTTAGCTCATGCA Shewana3_2796 3339359 - 3337536 - | hypothetical protein TERM 4020 3338266 - 3338278 + g 76 -3.3 -5.1861 | overlap 3338267 TCTAAGCCCGCATTC ACCTC GTC GAGGA TTTTTTGGTAATCCA Shewana3_2797 3341571 - 3339625 - | potassium efflux system protein TERM 4021 3340852 - 3340840 - G 82 -10.5 -3.86015 | CATTCCCGCCATAAA GGCGC CGA GCGCC ATAGACAAACCTAAC TERM 4022 3341444 - 3341428 - G 82 -12.3 -3.53012 | TTGCTGCTGGGTAAA CCAGTGG AAT CCACTGG GGCCACTCACCACTC Shewana3_2798 3341742 - 3342632 + | diguanylate cyclase Shewana3_2799 3344080 - 3342683 - | tRNA(Ile)-lysidine synthetase TERM 4023 3343785 - 3343807 + g 88 -14.2 -3.47227 | opp_overlap 3343785 GCCTCGGCCTCAATA CTCACTCTCG GCC CGAGGGTGAG TTGTACTCGTTCCAC TERM 4024 3343807 - 3343785 - G 76 -12 -3.01712 | opp_overlap 3343785 GCCTCGGCCTCAATA CTCACTCTCG GCC CGAGGGTGAG TTGTACTCGTTCCAC dnaE 3347634 - 3344158 - | DNA polymerase III subunit alpha TERM 4025 3347727 - 3347679 - R 71 -2.4 -5.22794 | gap 1, opp_overlap 3347692, overlap 3347688 3347692 ACAATCACTAAAAAA GCAGACTAACAAAGTCAC-AGCC CTTG GGCTAGTGACTTTGCTCTCAAGC TGAAGTGAAAACACC TERM 4026 3347718 - 3347688 - R 100 -13.5 -3.40042 | gap 1, opp_overlap 3347692, overlap 3347679 3347692 AAAAAAGCAGACTAA CAAAGTCAC-AGCC CTTG GGCTAGTGACTTTG CTCTCAAGCTGAAGT TERM 4027 3347692 - 3347714 + r 75 -8.5 -3.83502 | gap 1, opp_overlap 3347692 3347688 3347679 AAGCAGACTAACAAA GTCAC-AGCC CTTG GGCTAGTGAC TTTGCTCTCAAGCTG TERM 4028 3347714 - 3347692 - R 82 -8.5 -4.3078 | gap 1, opp_overlap 3347692, overlap 3347688 3347679 AAGCAGACTAACAAA GTCAC-AGCC CTTG GGCTAGTGAC TTTGCTCTCAAGCTG Shewana3_2801 3348381 - 3347752 - | RNase HII lpxB 3349538 - 3348381 - | lipid-A-disaccharide synthase TERM 4029 3348738 - 3348728 - G 71 -6.8 -4.26903 | CCGACGCCAGTAAAA TGCC ATC GGCA GCGGCCATCACTTCG TERM 4030 3349065 - 3349053 - G 74 -7.7 -4.16842 | opp_overlap 3349049, overlap 3349057 GGTATGGCCAACAAA GGTAC AAG GTACC TGATGCTTATCGTAA TERM 4031 3349506 - 3349481 - G 91 -11.1 -4.18762 | overlap 3349483 AACCTGCACCTAAAA TATCGCCGGAG AGTT CTCCGGCGACC ATTGCAAACACTAAT TERM 4032 3349504 - 3349483 - G 100 -15.9 -3.69216 | overlap 3349481 CCTGCACCTAAAATA TCGCCGGAG AGTT CTCCGGCGA CCATTGCAAACACTA Shewana3_2803 3350425 - 3349655 - | UDP-N-acetylglucosamine acyltransferase Shewana3_2804 3350874 - 3350422 - | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase TERM 4033 3350918 - 3350905 - R 71 -6.7 -4.08767 | opp_overlap 3350905 3350915 CCTAGTTCCTCAAAA TTGCC TTGG GGCAA TTACTCTGGTGTATT TERM 4034 3350940 - 3350969 + r 72 -9.4 -3.18681 | TGGTGTATTTGCATT CTTTTCCAACGT TTTCAC ACGTTGGAACAG TTCATCCAATTGACG Shewana3_2805 3351944 - 3350919 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 4035 3351768 - 3351806 + g 87 -12.5 -3.93782 | gap 1, opp_overlap 3351768 3351770, overlap 3351770 TTTAGCCGACAATAA CACCGCGCTC-GCTTGAG TTGA CTCAAGCTGAGCACGGTA TTTGCTGTTGGCTAA TERM 4036 3351806 - 3351768 - G 100 -16.9 -3.80733 | gap 1, opp_overlap 3351768 3351770, overlap 3351770 TTTAGCCGACAATAA CACCGCGCTC-GCTTGAG TTGA CTCAAGCTGAGCACGGTA TTTGCTGTTGGCTAA TERM 4037 3351804 - 3351770 - G 100 -17.3 -3.48824 | gap 1, opp_overlap 3351770 3351768, overlap 3351768 TAGCCGACAATAACA CCGCGCTC-GCTTGAG TTGA CTCAAGCTGAGCACGG TATTTGCTGTTGGCT TERM 4038 3351770 - 3351804 + g 91 -15.1 -3.55486 | gap 1, opp_overlap 3351768 3351770, overlap 3351768 TAGCCGACAATAACA CCGCGCTC-GCTTGAG TTGA CTCAAGCTGAGCACGG TATTTGCTGTTGGCT Shewana3_2806 3352445 - 3351948 - | outer membrane chaperone Skp (OmpH) Shewana3_2807 3354991 - 3352511 - | surface antigen (D15) Shewana3_2808 3356393 - 3355023 - | peptidase RseP TERM 4039 3355740 - 3355760 + g 70 -3.2 -4.87665 | gap 1, overlap 3355742 3355742 ATACACGCCCAGCCC CAG-CGCCG TAAT CGGCGACTC TTTTTCTGGGTCGAA Shewana3_2809 3357635 - 3356445 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Shewana3_2810 3358497 - 3357640 - | phosphatidate cytidylyltransferase Shewana3_2811 3359345 - 3358518 - | undecaprenyl pyrophosphate synthetase TERM 4040 3358959 - 3358945 - G 74 -4.2 -4.86033 | AAACGTGCAGAAAAA CGGC TGATATC GCCG ATGATATTCAATCTG TERM 4041 3359399 - 3359373 - R 100 -13.8 -4.33956 | TTTAAAATAGACAAA CGCCGTGTAG TATACCC CTACACGGCG TAGCAACTCTAGCTT Shewana3_2812 3359985 - 3359428 - | ribosome recycling factor pyrH 3360743 - 3360015 - | uridylate kinase TERM 4042 3360762 - 3360797 + r 71 -8.2 -3.41222 | opp_overlap 3360766 3360769, overlap 3360760 3360771 TTTTATATCCTGGTC ATAACAAGACCGCAGC CATT GCTGCGGTCTTGGGGG TATTTAGCGTTGGCG TERM 4043 3360793 - 3360766 - R 100 -20 -3.29263 | opp_overlap 3360762 3360760 3360771, overlap 3360769 ATATCCTGGTCATAA CAAGACCGCAGC CATT GCTGCGGTCTTG GGGGTATTTAGCGTT TERM 4044 3360790 - 3360769 - R 100 -15.9 -3.78934 | opp_overlap 3360762 3360760 3360771, overlap 3360766 TCCTGGTCATAACAA GACCGCAGC CATT GCTGCGGTC TTGGGGGTATTTAGC TERM 4045 3360771 - 3360788 + r 93 -12.7 -3.07029 | opp_overlap 3360769 3360766, overlap 3360762 3360760 CTGGTCATAACAAGA CCGCAGC CATT GCTGCGG TCTTGGGGGTATTTA tsf 3361665 - 3360814 - | elongation factor Ts TERM 4046 3361382 - 3361356 - G 76 -11 -3.24411 | overlap 3361354 3361352 3361357 AGTCTTCTAAAGACA CTTTAGACGCTG CAG CAACGTCTAAAA CAGCGTTAGCAAAAC TERM 4047 3361381 - 3361357 - G 73 -12.3 -2.54325 | overlap 3361356 3361354 3361352 GTCTTCTAAAGACAC TTTAGACGCTG CAG CAACGTCTAAA ACAGCGTTAGCAAAA TERM 4048 3361614 - 3361635 + g 80 -10.1 -4.0098 | TACAATCCATCATGC CTGCGCCAG TACG CTCGCGCAG TTCTTTAACTTGGGC TERM 4049 3361729 - 3361710 - R 100 -15 -4.60797 | opp_overlap 3361712 TTTGCAGATATAAAA CAGGGGCC GAAT GGCCCCTG TTAACCAATCAAAAT TERM 4050 3361712 - 3361727 + r 86 -11.8 -3.03124 | opp_overlap 3361710 TGCAGATATAAAACA GGGGCC GAAT GGCCCC TGTTAACCAATCAAA TERM 4051 3361751 - 3361784 + r 75 -9.1 -3.6968 | gap 1, opp_overlap 3361757 3361758, overlap 3361754 3361757 AATCAAAATCTTGGT TAATAAGG-GTGATGA GAC TCATCCCGCCTTATTA TTATTCGGCTTCTAC rpsB 3362513 - 3361785 - | 30S ribosomal protein S2 TERM 4052 3363312 - 3363281 - g 73 -5.2 -4.70266 | gap 1, overlap 3363285 AATACTATCGAAAAA TTCATCAAAGCCAGC AAA ACAGGCCTTGA-GAA ATATTCCATCGTGCA Shewana3_2816 3362783 - 3363619 + | methionine aminopeptidase TERM 4053 3364294 - 3364308 + G 79 -11.4 -3.55444 | opp_overlap 3364286 3364284 3364283 CAAACCATCGCCTGG GTGGCG ATG CGCCAC TTTGGCGCCTCACGG TERM 4054 3365572 - 3365560 - g 83 -3.4 -5.45802 | GGCGTAAAAGAAAAA GAGT TAGAT ACTC TCTGGCAACGCTTTA TERM 4055 3365806 - 3365784 - g 76 -3.4 -5.18726 | overlap 3365786 3365790 GCTCGATAATAAAAA CATCAACGTC CAC GACGCTAACA TTATGACATCGAAGG Shewana3_2817 3363688 - 3366273 + | PII uridylyl-transferase dapD 3366292 - 3367116 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 4056 3367147 - 3367166 + F 100 -10 -5.24531 | opp_overlap 3367147, overlap 3367158 CACGCAATCCTAAAA TGCCAGGC AAAT GCTTGGCA TTTTTTATGGAAAAT TERM 4057 3367166 - 3367147 - f 76 -7.8 -4.19953 | opp_overlap 3367147 3367158 CACGCAATCCTAAAA TGCCAGGC AAAT GCTTGGCA TTTTTTATGGAAAAT TERM 4058 3367158 - 3367212 + F 100 -13.2 -5.24531 | opp_overlap 3367147, overlap 3367147 AAAATGCCAGGCAAA TGCTTGGCATTTTTTATGGAAAATGC TTG GCATTTTTTATGGAAAATGCTTGGCA TTTTTTATGGAAAAT Shewana3_2819 3367385 - 3367738 + | hypothetical protein TERM 4059 3367762 - 3367778 + T 100 -9.4 -5.08601 | opp_overlap 3367761 GATTGCCAATATTAG GGCGTC TAACT GACGCC TTTTTATTACCATAA Shewana3_2820 3369741 - 3367813 - | metal dependent phosphohydrolase TERM 4060 3369793 - 3369766 - R 74 -10 -3.17051 | opp_overlap 3369766 3369768, overlap 3369764 CTTCCATGAGTAATA CACTTTGAATGG CATA CAATTCAAAGTG TCATGTGACTAGATG TERM 4061 3369766 - 3369793 + r 71 -10 -2.64933 | opp_overlap 3369764 3369766, overlap 3369768 CTTCCATGAGTAATA CACTTTGAATGG CATA CAATTCAAAGTG TCATGTGACTAGATG purU 3370829 - 3369927 - | formyltetrahydrofolate deformylase Shewana3_2822 3372317 - 3370959 - | PTS system, glucose-like IIB subunint TERM 4062 3371598 - 3371614 + g 85 -7.9 -4.85599 | TATGGCTAGCGCCGC TGCGGGG AGT CCCCACA TTTTTATCAAATAAC TERM 4063 3372169 - 3372148 - G 71 -5.8 -4.28018 | AATACGGCAGTAAAA GCGGCGAT GCCTTG ATCGCGGC AAAACCCTATCGCCA TERM 4064 3372356 - 3372336 - R 71 -9 -3.37612 | CGCAATCGGAATTAA CAGCGCCT GACTT AAGCGCTG GGCAAATTTAAACCA Shewana3_2823 3372856 - 3372392 - | flavodoxin TERM 4065 3373275 - 3373253 - R 73 -10.6 -2.53382 | AGTATCTTTAAGTTA GTAGTCGCCT CTT AAGCGACCAC AGGCCCTAAATGCCC Shewana3_2824 3374159 - 3373305 - | tRNA pseudouridine synthase C Shewana3_2825 3374481 - 3374146 - | dTDP-4-dehydrorhamnose 3,5-epimerase Shewana3_2826 3374613 - 3375626 + | hypothetical protein Shewana3_2827 3375623 - 3376009 + | hypothetical protein TERM 4066 3376167 - 3376137 - T 100 -16.3 -5.79595 | gap 1, opp_overlap 3376141, overlap 3376141 TGTGAAAATAAAAAA GAAAGGGCGTGGTC ATAA GACCACGCCCTT-C TGTTCTCTGTTAAGC TERM 4067 3376141 - 3376164 + T 100 -18.2 -3.83668 | opp_overlap 3376141 3376137 AAAATAAAAAAGAAA GGGCGTGGTC ATAA GACCACGCCC TTCTGTTCTCTGTTA TERM 4068 3376164 - 3376141 - T 100 -18.2 -5.29208 | opp_overlap 3376141, overlap 3376137 AAAATAAAAAAGAAA GGGCGTGGTC ATAA GACCACGCCC TTCTGTTCTCTGTTA TERM 4069 3376940 - 3376962 + T 80 -9 -4.0162 | opp_overlap 3376941, overlap 3376941 GAATAGCAAAAAGAA AGGGGCGCAC TAT GTGCACCCCA TTTATCCTCTGCAAG TERM 4070 3376961 - 3376941 - T 100 -14.7 -4.95618 | opp_overlap 3376940 3376941 AATAGCAAAAAGAAA GGGGCGCAC TAT GTGCACCCC ATTTATCCTCTGCAA TERM 4071 3376941 - 3376961 + T 93 -12.5 -3.00651 | opp_overlap 3376941, overlap 3376940 AATAGCAAAAAGAAA GGGGCGCAC TAT GTGCACCCC ATTTATCCTCTGCAA Shewana3_2828 3377971 - 3377666 - | hypothetical protein Shewana3_2829 3378602 - 3377964 - | GCN5-related N-acetyltransferase TERM 4072 3378437 - 3378449 + g 78 -4.1 -5.1356 | TCAACTCTTCACGGA TTGCG GCG CGTAA TTTTTGTTCGTAGGC Shewana3_2830 3378747 - 3378980 + | hypothetical protein TERM 4073 3378991 - 3378974 - T 93 -9.9 -4.3255 | TGTGCAATTAAGAAA GCCCTAA TAGT TTAGGGC TGACACTGAACCACT Shewana3_2831 3379428 - 3379030 - | hypothetical protein TERM 4074 3379472 - 3379460 - H 80 -6.3 -4.83615 | TACTTGTTATAAAAA TGCTT AAA AAGCA AAATCAATGCCAAAC Shewana3_2832 3379576 - 3379959 + | hypothetical protein Shewana3_2833 3379959 - 3380732 + | hypothetical protein TERM 4075 3380789 - 3380749 - T 100 -13.4 -3.18912 | gap 1, opp_overlap 3380743 3380756, overlap 3380756 TGACCCATTGATGAA TGGCAAACTCGGC-AGGCA AAAT TGCCGAGCCGAGTTTGCGA AACAGGTTTGCAAGA TERM 4076 3380756 - 3380782 + T 73 -8.7 -3.53343 | gap 1, opp_overlap 3380756 3380749, overlap 3380743 TTGATGAATGGCAAA CTCGGC-AGGCA AAAT TGCCGAGCCGAG TTTGCGAAACAGGTT TERM 4077 3380782 - 3380756 - T 75 -8.7 -3.67976 | gap 1, opp_overlap 3380743 3380756, overlap 3380749 TTGATGAATGGCAAA CTCGGC-AGGCA AAAT TGCCGAGCCGAG TTTGCGAAACAGGTT Shewana3_2834 3381385 - 3380840 - | SecY interacting protein Syd queF 3381517 - 3382410 + | 7-cyano-7-deazaguanine reductase TERM 4078 3382445 - 3382428 - T 100 -11.3 -4.73388 | opp_overlap 3382428 AACTTGTAGCAAAAA GCCCTGA GTAA TCAGGGC TTTTTTATTGTCTGT TERM 4079 3382428 - 3382445 + T 100 -11.3 -5.62045 | opp_overlap 3382428 AACTTGTAGCAAAAA GCCCTGA GTAA TCAGGGC TTTTTTATTGTCTGT Shewana3_2836 3383245 - 3382505 - | SpoOM family protein Shewana3_2837 3383828 - 3383307 - | putative lipoprotein TERM 4080 3383454 - 3383472 + g 71 -5.8 -4.37658 | CAAGCTTTTGGCATA GGCCGCCG CAT CCGCGCCC TTTTGTAACAGGCTT Shewana3_2838 3385085 - 3384087 - | 4'-phosphopantetheinyl transferase TERM 4081 3384569 - 3384555 - G 91 -7 -5.12707 | opp_overlap 3384554 CCAAAGGTCAAAAAA GCGCTG CCG CTGCGC ATCTTCACCTTCAAG TERM 4082 3385138 - 3385156 + H 78 -10.3 -3.29687 | overlap 3385136 3385135 CTATTCTACTCAGTT CTGCTCG CCTGA CGAGCAG TATCTTAATTTTGTT Shewana3_2839 3385466 - 3386335 + | transcriptional regulator, putative TERM 4083 3387250 - 3387229 - g 77 -8.7 -4.07687 | gap 1, opp_overlap 3387243, overlap 3387209 ATGGTCGCCTTAAAA CGC-CTCGAC GAT GCCGAGCGCG ATGGCGACCGTATCT TERM 4084 3387822 - 3387787 - g 70 -9.7 -3.31248 | gap 1 GAATACCGCCCAGAA CACGCGCGCGATGACG CCTAT CGCCAACGCA-GCGTG GCACAAAGCTGGCTG TERM 4085 3387891 - 3387881 - g 70 -4.6 -4.65895 | overlap 3387858 3387882 3387883 TGGGCGAGTTAAAAA CCGC GCT GCAG CAAGCAACCGCCGCC TERM 4086 3388370 - 3388358 - g 77 -10.5 -3.57144 | opp_overlap 3388358 CCCTTTATGCTCAAA GCGCC ATC GGCGC GCTCTCTATGGCGCA TERM 4087 3390058 - 3390047 - g 76 -7.2 -4.36914 | TGGTTGCCGATAAAA CGGG TTAT CCCG TTGAAATGTTAGAAC TERM 4088 3390610 - 3390590 - g 76 -7.5 -4.34866 | opp_overlap 3390599 AGTCAATAACACAAA CCGCAGTAG CCA CCAATGCGG CGGTTTCTAATGATG TERM 4089 3390829 - 3390801 - g 81 -13.9 -3.03243 | opp_overlap 3390791 3390801 ACTCAGCCCGGAAGA TCTCGCCGAGTGT CGC ACCCTCGGCGAAA TTGTGGCGCTATTTA TERM 4090 3390801 - 3390829 + G 80 -11.7 -3.34029 | opp_overlap 3390801, overlap 3390791 ACTCAGCCCGGAAGA TCTCGCCGAGTGT CGC ACCCTCGGCGAAA TTGTGGCGCTATTTA TERM 4091 3390915 - 3390897 - g 70 -4.6 -4.68724 | overlap 3390901 CCATGCAACACAAAA TGCACT ACTCGCA AGTGCA GTAGCTGCAAGCGCG TERM 4092 3390997 - 3390986 - g 76 -7.2 -4.36914 | TCGTGGCCGACAAAA CGGG CTAT CCCG TGGAAATGCTGGAAC Shewana3_2840 3386332 - 3394206 + | beta-ketoacyl synthase TERM 4093 3394658 - 3394675 + G 76 -8.4 -4.27316 | TACAAATACAGTCGA GCGCTG CTTAAA CAGCGC TTTTACCTTGGCGAA TERM 4094 3396331 - 3396304 - g 87 -9.8 -4.431 | opp_overlap 3396304 CACTTATCGATAAAA TCGGCCGCCAAC TTGA GTTGGGTGCCGA TGGCACTCAAACACA Shewana3_2841 3394311 - 3396575 + | omega-3 polyunsaturated fatty acid synthase PfaB TERM 4095 3397752 - 3397727 - g 71 -6.7 -4.1891 | opp_overlap 3397728, overlap 3397728 TTTTTCGAAGATAAA CTCGGCGGCAC TCAG GCGCCGCTGAT AGGTTCGGCTAAATC TERM 4096 3397751 - 3397728 - g 71 -10.2 -3.11024 | opp_overlap 3397728, overlap 3397727 TTTTCGAAGATAAAC TCGGCGGCAC TCAG GCGCCGCTGA TAGGTTCGGCTAAAT TERM 4097 3401312 - 3401297 - g 80 -10.4 -3.69338 | AACCAAGCGGAACAA GCGCCA CTGA TGGCGC AAATCCCTGATGTTG Shewana3_2842 3396584 - 3402553 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ TERM 4098 3402863 - 3402843 - g 76 -6.1 -4.60889 | overlap 3402833 3402845 AATCATGCCGAAAAA GGTTTAGGC ATA GCCCAAAGC GCCGAGGTGGTGGGT TERM 4099 3404148 - 3404165 + G 70 -8.3 -3.76224 | TACCAGATTTGGGCA GGCCCCG CCCT CGGCGCC TTTAATGCCTGGGCC Shewana3_2843 3402696 - 3404342 + | 2-nitropropane dioxygenase, NPD TERM 4100 3404366 - 3404391 + F 100 -16.3 -5.53288 | opp_overlap 3404358 GCTAAACCTTATTGA GCGGGTTAAGT GAAA ACTTAACCCGC TTTTTTTGACTTCAA Shewana3_2844 3404957 - 3405271 + | hypothetical protein Shewana3_2845 3405443 - 3405871 + | hypothetical protein TERM 4101 3405990 - 3406012 + T 76 -2.7 -5.33785 | gap 1, opp_overlap 3405990 AACACCTTAATCTAA GCCGATACTC AAAA GAC-ATCGGC TTTTTTATGCTGCTT Shewana3_2846 3408093 - 3406480 - | IS4 family transposase TERM 4102 3407583 - 3407596 + g 70 -8.1 -3.70902 | TTTCACAGATAAGCT CCAGG ATAA CCTGG TTTAGCTCTGGCCGA Shewana3_2847 3408271 - 3408465 + | hypothetical protein TERM 4103 3408541 - 3408578 + F 70 -9.3 -2.78996 | opp_overlap 3408540 3408576, overlap 3408540 GTGAGTACCACAGAG CCACTTTATCGCGAC AGACATTG GTTACGATAAAGTGG GTTTCCCTGAGGCTC TERM 4104 3409510 - 3409496 - g 80 -4.2 -5.16572 | ACCCAAGCGAAAAAA GCCC GACTTCA GGGC GCCGATATCATCATC Shewana3_2848 3408620 - 3410317 + | hypothetical protein Shewana3_2849 3411812 - 3410403 - | sigma-54 dependent trancsriptional regulator TERM 4105 3412471 - 3412446 - g 70 -3.3 -4.89009 | gap 1 ACAGTTAATTAAAAA GGCCAATC-ACC CAA GGTTAATCAGCC AATTGGCCGAGGATA Shewana3_2850 3412066 - 3412542 + | hypothetical protein TERM 4106 3412558 - 3412588 + F 93 -12.6 -3.07622 | opp_overlap 3412564, overlap 3412564 GACAGCAATGCCATC CAATAACGCGGCCA ACT TAGCCGCGTTTTTG TTGCCTGCGATCTAT TERM 4107 3412564 - 3412582 + F 100 -10.2 -5.10461 | opp_overlap 3412564, overlap 3412558 AATGCCATCCAATAA CGCGGCCA ACT TAGCCGCG TTTTTGTTGCCTGCG TERM 4108 3412582 - 3412564 - f 100 -12.4 -3.68341 | opp_overlap 3412564 3412558 AATGCCATCCAATAA CGCGGCCA ACT TAGCCGCG TTTTTGTTGCCTGCG Shewana3_2851 3412814 - 3413362 + | transport-associated TERM 4109 3413496 - 3413469 - T 86 -11.4 -3.3422 | opp_overlap 3413471 3413476, overlap 3413471 3413476 CACTCGGGCAAAAAC CACAAAACCAGC TTCG GCTGGTTTTGTT TTATTGGAGCAATGT TERM 4110 3413471 - 3413494 + T 100 -14 -4.63486 | opp_overlap 3413471 3413469 3413476, overlap 3413476 CTCGGGCAAAAACCA CAAAACCAGC TTCG GCTGGTTTTG TTTTATTGGAGCAAT TERM 4111 3413494 - 3413471 - T 100 -14 -3.23708 | opp_overlap 3413471 3413476, overlap 3413469 3413476 CTCGGGCAAAAACCA CAAAACCAGC TTCG GCTGGTTTTG TTTTATTGGAGCAAT TERM 4112 3413489 - 3413476 - T 86 -8.1 -4.72556 | opp_overlap 3413476 3413471, overlap 3413471 3413469 GCAAAAACCACAAAA CCAGC TTCG GCTGG TTTTGTTTTATTGGA TERM 4113 3413476 - 3413489 + T 100 -8.1 -5.27476 | opp_overlap 3413471 3413469 3413476, overlap 3413471 GCAAAAACCACAAAA CCAGC TTCG GCTGG TTTTGTTTTATTGGA Shewana3_2852 3413937 - 3413527 - | hypothetical protein TERM 4114 3414030 - 3414009 - R 100 -13.1 -4.44046 | opp_overlap 3414006 GCTAGGTGAAATAAA TACCTCAGC CGTA GCTGAGGTA AAATTAACTTAGCAT Shewana3_2853 3414871 - 3414062 - | hypothetical protein TERM 4115 3414815 - 3414805 - G 71 -6.8 -4.208 | TGTTAAAACGATAAA TGCC CGC GGCA AGAATACTGAGCACA Shewana3_2854 3415127 - 3415369 + | hypothetical protein Shewana3_2855 3415866 - 3415366 - | hypothetical protein TERM 4116 3415913 - 3415889 - R 83 -10.9 -3.45571 | overlap 3415907 TCCTTTAAATATCAA TATCAGCTTAT AAA ATAAGCCGATA CATCAGCTGCGACTC Shewana3_2856 3416607 - 3415999 - | cyclic nucleotide-binding protein Shewana3_2857 3417238 - 3416612 - | fumarylacetoacetate (FAA) hydrolase TERM 4117 3416935 - 3416952 + g 74 -6.9 -4.40221 | AGGCCTTGGCCTTTT CCCAGGG TAAT CCCTTGG TTTTCAGTTTACTTT Shewana3_2858 3418305 - 3417292 - | succinylglutamate desuccinylase/aspartoacylase TERM 4118 3417726 - 3417713 - G 72 -8.1 -3.87627 | opp_overlap 3417712, overlap 3417711 GCCTCATACAAAATA CAGGG AATG CCCTG CTGGTTCGCATAGCC Shewana3_2859 3418969 - 3418376 - | MarR family transcriptional regulator TERM 4119 3418564 - 3418576 + g 76 -6.2 -4.67048 | CCTTACTGTGCTCAC GGGC AATCA GCCC TTTATTTTCAAGTCG Shewana3_2860 3419079 - 3420275 + | major facilitator transporter TERM 4120 3420320 - 3420295 - T 100 -16.3 -5.42131 | TAAGCACATAAAAAA CCGCCCAATTT GTAA AAATTGGGCGG TTCAGGTATCAAGCT Shewana3_2861 3420920 - 3420357 - | PhnA protein Shewana3_2862 3423268 - 3421055 - | TonB-dependent heme/hemoglobin receptor family protein TERM 4121 3421555 - 3421575 + g 71 -11.1 -2.78596 | GATTGGGGTCGGACT TTGCCCCGC GGC GCTGGGCAA TATCATCCCGCCCTA TERM 4122 3423348 - 3423330 - H 75 -8.2 -3.87149 | opp_overlap 3423330 GGCATCAAAGCCAAA GATGAGAA TAA TTCTCACC TAGCTTTACATGTAA Shewana3_2863 3423499 - 3424206 + | hypothetical protein TERM 4123 3424218 - 3424248 + T 74 -6.2 -4.4518 | gap 1, overlap 3424218 3424220 TTAGTTTTTGCTGTT G-ACGAGGCCAAG CATTCA CTTGGCCTCATGC TTTTCGGTTTTGCTT Shewana3_2864 3424880 - 3424269 - | TetR family transcriptional regulator TERM 4124 3424443 - 3424411 - G 84 -4.7 -5.2189 | TGAAGCACTAAAAAA GCCGCGAGCGACTCA GGT TGAACCGATTGAGGC AACTCGCCCTGCAGC Shewana3_2865 3425036 - 3425662 + | glutathione S-transferase domain-containing protein TERM 4125 3425976 - 3425959 - g 81 -6.3 -5.00884 | ATCTGGCGGAAAAAA CCGGTAA GTTC TTACCAG CCGATCCTAAAAAGC Shewana3_2866 3425724 - 3426392 + | glutathione S-transferase domain-containing protein TERM 4126 3426429 - 3426449 + F 100 -8.3 -5.1861 | opp_overlap 3426429 CGTTTTCCCCATCAA GCCCCAA CTCAGCA TTGGGGC TTTTTTACTGCTAGC TERM 4127 3427755 - 3427793 + G 100 -15.5 -3.68853 | opp_overlap 3427790, overlap 3427748 GAAGCTTAGTCTATG CCACTTGCTCATTGTCG CCTGT TGAAAATGAGCAAGTGG TTTCCGCCTTTTTAC Shewana3_2867 3426533 - 3427942 + | Fmu (Sun) domain-containing protein TERM 4128 3428232 - 3428262 + F 71 -4.2 -4.88407 | gap 2, opp_overlap 3428235 3428236, overlap 3428237 CCTTATTTTTTATCA GAACTTGGCACTCA TATTT TGAGTGCC-A-TTC TTTTTGCTTCCATAC TERM 4129 3428237 - 3428259 + F 100 -12.1 -4.53777 | opp_overlap 3428236 3428235, overlap 3428232 TTTTTTATCAGAACT TGGCACTCA TATTT TGAGTGCCA TTCTTTTTGCTTCCA Shewana3_2868 3428491 - 3428655 + | hypothetical protein TERM 4130 3428744 - 3428710 - f 70 -7.9 -3.69734 | opp_overlap 3428712 3428715 3428719, overlap 3428711 AATAAGCCAGTCAAA TCCCAGCAAGTTGGA TAACC TCCAACTTGCTAGTT AGTCCAAGTTATCTT TERM 4131 3428743 - 3428711 - f 81 -11.4 -2.81118 | opp_overlap 3428712 3428715 3428719, overlap 3428710 ATAAGCCAGTCAAAT CCCAGCAAGTTGGA TAACC TCCAACTTGCTAGT TAGTCCAAGTTATCT TERM 4132 3428712 - 3428742 + F 93 -12.7 -3.17219 | opp_overlap 3428711 3428710, overlap 3428715 3428719 TAAGCCAGTCAAATC CCAGCAAGTTGGA TAACC TCCAACTTGCTAG TTAGTCCAAGTTATC TERM 4133 3428715 - 3428739 + F 91 -13 -2.78395 | opp_overlap 3428711 3428710, overlap 3428712 3428719 GCCAGTCAAATCCCA GCAAGTTGGA TAACC TCCAACTTGC TAGTTAGTCCAAGTT Shewana3_2869 3428896 - 3432021 + | hypothetical protein TERM 4134 3432018 - 3432001 - T 72 -7.7 -3.78775 | overlap 3432012 CCGGCGATTATCAAA GGCGAAA AAGA CTTCGCC TAAATGCAAAGGGGC TERM 4135 3432029 - 3432049 + T 100 -14.7 -4.84761 | opp_overlap 3432029 TCGCCTAAATGCAAA GGGGCTGCG TTA TGCAGCCCC TTTTTATCCAGATAT TERM 4136 3432049 - 3432029 - T 100 -14 -3.84451 | opp_overlap 3432029 TCGCCTAAATGCAAA GGGGCTGC GTTAT GCAGCCCC TTTTTATCCAGATAT Shewana3_2870 3433793 - 3432126 - | diguanylate cyclase TERM 4137 3433468 - 3433431 - G 78 -4.1 -5.13741 | opp_overlap 3433437 3433438, overlap 3433433 GTAATCGAATAAAAA TTCATAGGGCGCATAGT AACC ACTATGGGCCGTTTGCA CTGAGCCATCACTGC TERM 4138 3433776 - 3433761 - G 70 -3.2 -4.83593 | AAGAAGCAGCAAAAA GCACCA AAAA TGTTGC AAGTTAGGTTTACTC Shewana3_2871 3433991 - 3434842 + | hypothetical protein TERM 4139 3434829 - 3434853 + T 90 -11.4 -3.60296 | opp_overlap 3434829 3434843 AAGCCAAATGGAAAA GCCGGCGAAG TTAAC CTTGGCCGGC TTTGAAATCAAAGTG TERM 4140 3434853 - 3434829 - T 100 -11.4 -4.37198 | opp_overlap 3434829, overlap 3434843 AAGCCAAATGGAAAA GCCGGCGAAG TTAAC CTTGGCCGGC TTTGAAATCAAAGTG TERM 4141 3434880 - 3434866 - T 100 -11.4 -4.05788 | overlap 3434843 GGCTTTGAAATCAAA GTGGCC ACG GGCCAC TCAATAAAGGCGAGA Shewana3_2872 3435435 - 3434896 - | YfaZ family protein Shewana3_2873 3436108 - 3435599 - | GCN5-related N-acetyltransferase TERM 4142 3436049 - 3436070 + g 91 -13 -4.07568 | opp_overlap 3436044, overlap 3436044 ATCGATTAATGCCGC CGCAGCCG CTAATT CGGCTGCG TTTTGGCAAAGGACA Shewana3_2874 3437507 - 3436137 - | MgtE intracellular region Shewana3_2875 3437655 - 3438140 + | glutathione peroxidase TERM 4143 3438322 - 3438339 + T 100 -11.3 -5.65177 | opp_overlap 3438314 AGGAATAGGTCACTA GGCAACC GATT GGTTGCC TTTTTTTATGCCTAT TERM 4144 3438705 - 3438723 + T 100 -13.2 -5.77988 | ACTTTGATTCTTTTA TGGCAACC TTA GGTTGCCA TTTTTTTATCTGTAT Shewana3_2876 3440555 - 3438741 - | response regulator receiver protein TERM 4145 3440774 - 3440745 - R 79 -3.1 -5.38958 | opp_overlap 3440747, overlap 3440747 ATGCATAAAGAAAAA CATAAAAAATATT TTCA AATATTTTCTATT TTTGCTGAACTAATT TERM 4146 3440772 - 3440747 - R 70 -5.7 -4.31946 | opp_overlap 3440747, overlap 3440745 GCATAAAGAAAAACA TAAAAAATATT TTCA AATATTTTCTA TTTTTGCTGAACTAA TERM 4147 3440909 - 3440926 + r 100 -9.9 -5.72616 | opp_overlap 3440907 GAATTGGAATTTACA GCAACCT TATT AGGTTGC TTTTTTTATGTCCAT TERM 4148 3441026 - 3441009 - R 100 -9.1 -5.61881 | GCCCAAAAACAAAAA GGGCCTC CGAA GAGACCC TTAAGGTTTAGCGAT Shewana3_2877 3442019 - 3441048 - | phosphate binding protein TERM 4149 3442214 - 3442188 - R 100 -11 -5.03314 | opp_overlap 3442188 3442193, overlap 3442193 TTGAGGTTTAAAAAA CAAAACAGACCA TAA TGGCCTGTTTTA TATGTAAAAATAATA TERM 4150 3442193 - 3442209 + r 77 -6.5 -4.60797 | opp_overlap 3442193 3442188, overlap 3442188 GTTTAAAAAACAAAA CAGACCA TAA TGGCCTG TTTTATATGTAAAAA TERM 4151 3442209 - 3442193 - R 100 -8.7 -5.42198 | opp_overlap 3442188 3442193, overlap 3442188 GTTTAAAAAACAAAA CAGACCA TAA TGGCCTG TTTTATATGTAAAAA Shewana3_2878 3443544 - 3442246 - | PAS/PAC sensor signal transduction histidine kinase TERM 4152 3442437 - 3442424 - G 74 -4.5 -4.85599 | opp_overlap 3442414 TCGACGCGATAAAAA CGCTC GGTT AAGCG GCTAATATGCTGCGG Shewana3_2879 3444314 - 3443625 - | two component transcriptional regulator TERM 4153 3444461 - 3444476 + r 78 -10.4 -3.35867 | opp_overlap 3444461 TATCGCAATAAAAAA GGAGGC CTAA GCCTCC TTAATTCAACCTTAA TERM 4154 3444476 - 3444461 - R 100 -10.4 -5.46657 | opp_overlap 3444461 TATCGCAATAAAAAA GGAGGC CTAA GCCTCC TTAATTCAACCTTAA Shewana3_2880 3445444 - 3444500 - | porin TERM 4155 3445009 - 3445025 + g 74 -7.3 -4.24002 | overlap 3445000 GTGACAGGTAAGTTG CCGTTTG GCC TAAACGG TTTTCACCTTTGAAC TERM 4156 3446516 - 3446487 - g 71 -6.5 -4.14243 | opp_overlap 3446496, overlap 3446496 GATGCCAGCGTAAAA CGCTTAAAATTCT CCGA AGAATTTAGAGCG GGGAATGATGAGCTG rdgC 3445737 - 3446651 + | recombination associated protein TERM 4157 3446769 - 3446737 - T 100 -23.5 -4.8384 | opp_overlap 3446737 GAAATAATGTAAAAA GGCGCCGCAGTGGAC TCA GTTCACTGCGGCGCC TTTTTAGACTCTATA TERM 4158 3446737 - 3446769 + T 100 -25.7 -4.65838 | opp_overlap 3446737 GAAATAATGTAAAAA GGCGCCGCAGTGGAC TCA GTTCACTGCGGCGCC TTTTTAGACTCTATA Shewana3_2882 3448679 - 3446868 - | peptidase M61 domain-containing protein TERM 4159 3446926 - 3446939 + g 70 -3.1 -4.81685 | TCAATGCCAAGCCAG GCTTT GAAG AAGGC TTTTTGCTGCTTAGT Shewana3_2883 3448820 - 3450982 + | TPR repeat-containing protein Shewana3_2884 3451132 - 3452688 + | diguanylate cyclase TERM 4160 3452830 - 3452818 - g 100 -6.9 -5.40474 | ATCGCCTCAAAAAAA GCGCC AAG AGCGC CCTATATCAACTGTA TERM 4161 3453772 - 3453749 - g 87 -8.1 -4.8143 | overlap 3453750 GGAACAAGTGAAAAA CCATCGCCG CGCCAC CGGCGATGC CTATCAATATCAATG TERM 4162 3453771 - 3453750 - g 77 -11.6 -3.47773 | overlap 3453749 GAACAAGTGAAAAAC CATCGCCG CGCCAC CGGCGATG CCTATCAATATCAAT Shewana3_2885 3452745 - 3454100 + | hypothetical protein xni 3454115 - 3454897 + | exonuclease IX Shewana3_2887 3455008 - 3455436 + | hypothetical protein Shewana3_2888 3456203 - 3456859 + | hypothetical protein TERM 4163 3457057 - 3457040 - T 100 -12.7 -5.61596 | opp_overlap 3457040 ATTTCCATAAAAAAA CGCCACC TTAT GGTGGCG TTTGCTTATGAATAA TERM 4164 3457040 - 3457057 + T 100 -12.7 -4.00868 | opp_overlap 3457040 ATTTCCATAAAAAAA CGCCACC TTAT GGTGGCG TTTGCTTATGAATAA Shewana3_2889 3459904 - 3457088 - | peptidase S9 prolyl oligopeptidase TERM 4165 3458243 - 3458259 + g 70 -2.3 -5.00616 | ATTATCGACTAAGCC TTCAACA CGA TATTGAA TTTTTTGAGCGCGCC Shewana3_2890 3460159 - 3461169 + | isocitrate dehydrogenase TERM 4166 3461214 - 3461185 - T 100 -12.3 -3.53012 | opp_overlap 3461192, overlap 3461192 TCGCTTTGCGCGAAA CAAAAAACGCACC CTAG GGTGCGTTTTTTT ATGGCCGCAATCTAG TERM 4167 3461207 - 3461192 - T 100 -10.4 -5.63517 | opp_overlap 3461192, overlap 3461185 GCGCGAAACAAAAAA CGCACC CTAG GGTGCG TTTTTTTATGGCCGC TERM 4168 3461192 - 3461207 + T 100 -10.4 -5.60993 | opp_overlap 3461192 3461185 GCGCGAAACAAAAAA CGCACC CTAG GGTGCG TTTTTTTATGGCCGC TERM 4169 3461269 - 3461249 - T 84 -5.4 -5.31519 | opp_overlap 3461249 ACAGCCAAATAAAAA GCCCCA GACATGACT TGGGGC TTCACTCACTAACAG TERM 4170 3461336 - 3461297 - T 71 -5 -4.63542 | gap 1, opp_overlap 3461287 3461310, overlap 3461287 CAGAACGGCCAAAAA CCGCCGATTAGTTCCAAGC CTG GCTCGGT-CTAATCCACAG GTGAACAGTCACTTC Shewana3_2891 3462389 - 3461304 - | putative RNA 2'-O-ribose methyltransferase TERM 4171 3461977 - 3461993 + g 74 -2.1 -5.06451 | overlap 3461978 TTAGGATTTTCCTGT GCCAGCA AAC TGCCGGA TTTTTTCAAATGCTG TERM 4172 3462504 - 3462455 - R 100 -13.2 -3.29471 | gap 1, opp_overlap 3462463 3462465 3462470, overlap 3462463 3462465 3462470 GCGCCAGTATAGCAA TTTCAAT-ACACAAAAGCCCGAT TTGCT ATCGGGCTTTTGTGTGATTGGCA GCATGAACGCACAGC TERM 4173 3462463 - 3462495 + r 100 -19.4 -2.71364 | opp_overlap 3462463 3462455 3462465 3462470, overlap 3462465 3462470 ATAGCAATTTCAATA CACAAAAGCCCGAT TTGCT ATCGGGCTTTTGTG TGATTGGCAGCATGA TERM 4174 3462495 - 3462463 - R 100 -19.4 -3.10732 | opp_overlap 3462463 3462465 3462470, overlap 3462455 3462465 3462470 ATAGCAATTTCAATA CACAAAAGCCCGAT TTGCT ATCGGGCTTTTGTG TGATTGGCAGCATGA TERM 4175 3462493 - 3462465 - R 100 -16.2 -3.10879 | opp_overlap 3462463 3462465 3462470, overlap 3462463 3462455 3462470 AGCAATTTCAATACA CAAAAGCCCGAT TTGCT ATCGGGCTTTTG TGTGATTGGCAGCAT TERM 4176 3462465 - 3462493 + r 100 -16.2 -2.90194 | opp_overlap 3462465 3462463 3462455 3462470, overlap 3462463 3462470 AGCAATTTCAATACA CAAAAGCCCGAT TTGCT ATCGGGCTTTTG TGTGATTGGCAGCAT TERM 4177 3462488 - 3462470 - R 100 -10.3 -4.67943 | opp_overlap 3462470 3462465 3462463, overlap 3462465 3462463 3462455 TTTCAATACACAAAA GCCCGAT TTGCT ATCGGGC TTTTGTGTGATTGGC TERM 4178 3462470 - 3462488 + r 100 -10.3 -4.614 | opp_overlap 3462465 3462463 3462455 3462470, overlap 3462465 3462463 TTTCAATACACAAAA GCCCGAT TTGCT ATCGGGC TTTTGTGTGATTGGC Shewana3_2892 3462935 - 3462543 - | hypothetical protein TERM 4179 3462884 - 3462874 - G 76 -8.2 -4.26076 | CCATGGGCACCAAAA GCGC CTA GCGC AACCGCAAAAAATCC TERM 4180 3462911 - 3462897 - G 76 -2.7 -5.09426 | overlap 3462898 CGCAACCGCAAAAAA TCCGC TTACC GCGGC GAGTAACAACAATCC Shewana3_2893 3463694 - 3463023 - | hypothetical protein TERM 4181 3463448 - 3463467 + g 70 -4.2 -4.62069 | gap 1, overlap 3463423 AGGCAAGCAGCTTTG GCGCTCTGT CAG GCGG-GCGC TTTTTACCATCCACG Shewana3_2894 3464586 - 3463675 - | DNA-binding transcriptional activator GcvA TERM 4182 3464580 - 3464603 + g 70 -2.5 -4.97312 | GTGGTGGTAAGCGTC TTGACATAG TGATCT CTATCTCAA TTTTTAATTAGTTTT Shewana3_2895 3464763 - 3464996 + | hypothetical protein TERM 4183 3465046 - 3465019 - T 100 -11.4 -4.30576 | opp_overlap 3465024, overlap 3465024 TGCTGATCAGTAAAA TAAAAGCCGCAT TCCA ATGCGGCTTTTT TGTATTCGTTTACCT TERM 4184 3465041 - 3465024 - T 100 -11.3 -5.14626 | opp_overlap 3465024, overlap 3465019 ATCAGTAAAATAAAA GCCGCAT TCCA ATGCGGC TTTTTTGTATTCGTT TERM 4185 3465024 - 3465041 + T 100 -11.3 -5.50925 | opp_overlap 3465024 3465019 ATCAGTAAAATAAAA GCCGCAT TCCA ATGCGGC TTTTTTGTATTCGTT Shewana3_2896 3466602 - 3465148 - | thiamine biosynthesis protein ThiI TERM 4186 3466767 - 3466787 + r 82 -6.8 -4.85599 | opp_overlap 3466768, overlap 3466768 AATCACAAATAAAAA AGCCGTGA GCAAG TCACGGCG TTTTTATCGAGTCAC TERM 4187 3466786 - 3466768 - R 100 -10.3 -5.73978 | opp_overlap 3466767 3466768 ATCACAAATAAAAAA GCCGTGA GCAAG TCACGGC GTTTTTATCGAGTCA TERM 4188 3466768 - 3466786 + r 80 -10.3 -3.50877 | opp_overlap 3466768, overlap 3466767 ATCACAAATAAAAAA GCCGTGA GCAAG TCACGGC GTTTTTATCGAGTCA motB 3467739 - 3466819 - | flagellar motor protein MotB TERM 4189 3467315 - 3467325 + g 74 -8.2 -4.09685 | TTATCCTGCGCCGCT GCGG CTT CCGC TTTTACCGCATCCGC Shewana3_2898 3468510 - 3467743 - | flagellar motor protein PomA TERM 4190 3468103 - 3468087 - G 79 -6.6 -4.60924 | CAAAGGCCCTAAAAA TCGCAA TGCCG TTGCGA TGGCGCTCTTCGGTG Shewana3_2899 3468825 - 3469064 + | exodeoxyribonuclease VII small subunit Shewana3_2900 3469067 - 3469948 + | farnesyl-diphosphate synthase TERM 4191 3470091 - 3470115 + G 74 -7.8 -4.23758 | overlap 3470092 GGGAGTTTCTTCTTA AGTCCGTTGG CATGT CCAGCGGACA TTTTGCCTCTGGACT TERM 4192 3470092 - 3470114 + G 74 -11.3 -3.13773 | overlap 3470091 GGAGTTTCTTCTTAA GTCCGTTGG CATGT CCAGCGGAC ATTTTGCCTCTGGAC TERM 4193 3471662 - 3471649 - g 73 -5.2 -4.66987 | CACAGTGGAAGAAAA CGCC ATTATG GGCG GCGCTGGCTCTGGTG Shewana3_2901 3469970 - 3471838 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 4194 3471914 - 3471943 + T 100 -16.7 -3.08966 | opp_overlap 3471914 3471920, overlap 3471920 CAAAAAACAGACAAA TAAAAAGGACTGC ATCT GCAGTCCTTTTTA TTACGTAACCTTTAA TERM 4195 3471943 - 3471914 - T 100 -16.7 -4.42491 | opp_overlap 3471914 3471920, overlap 3471920 CAAAAAACAGACAAA TAAAAAGGACTGC ATCT GCAGTCCTTTTTA TTACGTAACCTTTAA TERM 4196 3471920 - 3471937 + T 100 -11.3 -5.10461 | opp_overlap 3471914 3471920, overlap 3471914 ACAGACAAATAAAAA GGACTGC ATCT GCAGTCC TTTTTATTACGTAAC TERM 4197 3471937 - 3471920 - T 100 -11.3 -5.4433 | opp_overlap 3471920 3471914, overlap 3471914 ACAGACAAATAAAAA GGACTGC ATCT GCAGTCC TTTTTATTACGTAAC Shewana3_2902 3472606 - 3471986 - | GrpE protein TERM 4198 3472331 - 3472342 + g 70 -4.4 -4.62069 | opp_overlap 3472331 TAACACTGGCAGTAA TTCG TTGG CGAA TTTTTCCAATGCAAA Shewana3_2903 3472655 - 3473584 + | ATP-NAD/AcoX kinase TERM 4199 3474445 - 3474463 + G 71 -5.9 -4.42062 | opp_overlap 3474422 3474444 3474445 3474447 CATCTCCATGATAAT CACAGCG CTGGC CGCCGTG TTTATTTGGCAAATG Shewana3_2904 3474335 - 3475978 + | L-lactate permease TERM 4200 3475988 - 3476017 + F 77 -6.3 -4.66833 | opp_overlap 3475990 3475991, overlap 3475991 3475995 TTCTAAGCCAATCTA AACCTAAGGCCGC GTTG GCGGCCTTAGTCA TTTTTAGCGTTGAGA TERM 4201 3476015 - 3475990 - f 100 -13.3 -3.78409 | opp_overlap 3475988 3475991 3475995, overlap 3475991 CTAAGCCAATCTAAA CCTAAGGCCGC GTTG GCGGCCTTAGT CATTTTTAGCGTTGA TERM 4202 3476014 - 3475991 - f 100 -16.8 -2.86564 | opp_overlap 3475991 3475988 3475995, overlap 3475990 TAAGCCAATCTAAAC CTAAGGCCGC GTTG GCGGCCTTAG TCATTTTTAGCGTTG TERM 4203 3475991 - 3476014 + F 100 -16.8 -3.26237 | opp_overlap 3475990 3475991, overlap 3475988 3475995 TAAGCCAATCTAAAC CTAAGGCCGC GTTG GCGGCCTTAG TCATTTTTAGCGTTG TERM 4204 3475995 - 3476010 + F 91 -11.8 -3.4158 | opp_overlap 3475991 3475990, overlap 3475991 3475988 CCAATCTAAACCTAA GGCCGC GTTG GCGGCC TTAGTCATTTTTAGC TERM 4205 3477961 - 3477938 - g 70 -3.2 -4.75372 | gap 1 ACCACTGAGCAAAAA GTGTT-GGATT TCC AAGCCAAACAC TTCGGCGCAGTCAAC TERM 4206 3478052 - 3478023 - g 71 -5.7 -4.431 | gap 1 GAGTCATCCATAAAA TCACCGGCGATGGT ATC ACCAACG-CGCTGA TGAAAACCGGTCGCT Shewana3_2905 3476042 - 3478846 + | FAD linked oxidase domain-containing protein TERM 4207 3478860 - 3478879 + F 100 -13.6 -4.86731 | opp_overlap 3478860 AAAACACTGAATAAA CGGGGCTA GGGT TAGCCCCG TTTTCTTTAGAAGAA TERM 4208 3478879 - 3478860 - f 100 -13.6 -4.27911 | opp_overlap 3478860 AAAACACTGAATAAA CGGGGCTA GGGT TAGCCCCG TTTTCTTTAGAAGAA TERM 4209 3478879 - 3478897 + F 71 -9 -3.39897 | opp_overlap 3478892 GCTAGGGTTAGCCCC GTTTTCTT TAG AAGAAAAC TATTCTCATTTATCG Shewana3_2906 3479116 - 3479892 + | hypothetical protein Shewana3_2907 3479903 - 3481297 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_2908 3481299 - 3481868 + | hypothetical protein TERM 4210 3481894 - 3481912 + T 100 -9.5 -5.13741 | opp_overlap 3481894 GCTAAACCTTTAAGA GCCGCCT TTAAT GGGCGGC TTTTTATTGGATTGC TERM 4211 3482099 - 3482126 + T 88 -12.6 -2.65264 | TCCATCCTTGGATGC TCGACCGCCCCG TCCA TGGGGCGGACGG TCGTCTCGCTAATCA Shewana3_2909 3483914 - 3482337 - | hypothetical protein TERM 4212 3482490 - 3482501 + g 73 -5.8 -4.46212 | AACTATTCTTTTCTC GACG ATTA CGTC TTTTATAATCAACCG TERM 4213 3483945 - 3483986 + H 100 -15.9 -3.18511 | opp_overlap 3483939 GTGCTAACATTTTAT TCGTGCGCGTTTACATCGC TGGA GCAGTGAAAACGCGCACGG TTAACTATCTGTATG TERM 4214 3484046 - 3484057 + H 73 -7.2 -4.09243 | opp_overlap 3484046 CACCATCTGCAAAAA CGCG TATG CGCG TTTTCCAAAGCTATA TERM 4215 3484057 - 3484046 - H 81 -7.2 -4.60487 | opp_overlap 3484046 CACCATCTGCAAAAA CGCG TATG CGCG TTTTCCAAAGCTATA TERM 4216 3485133 - 3485110 - g 70 -9.6 -3.32946 | overlap 3485108 GCGTGAATCAGAATA CCCTTGAGGT CCCA ACCCCAAAGG AAAGCATTGCCAATA TERM 4217 3485444 - 3485454 + G 70 -8.2 -3.77588 | AACCATTCGTGCTGT CGCC TTA GGCG TTATTGGTGTGGCCT Shewana3_2910 3484779 - 3485888 + | hypothetical protein TERM 4218 3486134 - 3486165 + F 84 -11.6 -3.1355 | gap 1, overlap 3486123 CCGATGTGCGGATCG CTGGGC-TGCGCATT CTC GAAGCGCAAGCCCAG TTGGGTATCGCTGAA Shewana3_2912 3487437 - 3488531 + | secretion protein HlyD family protein Shewana3_2913 3488666 - 3489565 + | hypothetical protein Shewana3_2914 3489567 - 3489977 + | Ion transport 2 domain-containing protein TERM 4219 3490110 - 3490125 + F 100 -9 -5.10461 | opp_overlap 3490110 TATATTGTGTATTAA GGCAGA AGAA TCTGCC TTTTTATTGACTGAG Shewana3_2915 3490175 - 3491653 + | phage integrase family protein TERM 4220 3494084 - 3494074 - g 91 -6.8 -5.1675 | opp_overlap 3494073 GTATTGATGAAAAAA GGCT TTG AGCC GATTTTCATGGAAAT Shewana3_2916 3491653 - 3494322 + | hypothetical protein Shewana3_2917 3494322 - 3494999 + | hypothetical protein Shewana3_2918 3494999 - 3495436 + | hypothetical protein TERM 4221 3496732 - 3496719 - g 82 -6.7 -4.77173 | opp_overlap 3496719 TGTCGAGAAAACAAA TCACC TACT GGTGA TTGATGAGGCAAGCA TERM 4222 3497042 - 3497024 - g 71 -6 -4.39989 | opp_overlap 3497024 3497040 ACGAAACCAGTAAAA CAGACATT GCC AAAGTCTG TTGTGAGCTTTACCA Shewana3_2919 3495433 - 3497598 + | DNA helicase/exodeoxyribonuclease V, alpha subunit TERM 4223 3497904 - 3497893 - f 84 -3.6 -5.43487 | AAACTATATAAAAAA CCGC TACC GCGA AAAAGCAAATTCCTA TERM 4224 3498009 - 3497972 - f 71 -5 -4.66833 | gap 1, overlap 3497976 GGCCAAGTCCAAAAA GCGATTTATGCCCTGCA AACAG CGCAGCGCATAAAT-AC TAAGACGTTAAGCGG Shewana3_2920 3498045 - 3499076 + | hypothetical protein TERM 4225 3499158 - 3499111 - f 100 -9.9 -4.56597 | gap 2, opp_overlap 3499110 3499111, overlap 3499112 TTTTTCGTTTAAAAA GGCCTTCCAACGGACGCAGTCGC TAAC GCGCCTGC-TCCGATG-AAGGCA ACTTTATGTACTGAG TERM 4226 3499157 - 3499112 - f 100 -13.4 -3.33744 | gap 2, opp_overlap 3499110 3499111, overlap 3499111 TTTTCGTTTAAAAAG GCCTTCCAACGGACGCAGTCGC TAAC GCGCCTGC-TCCGATG-AAGGC AACTTTATGTACTGA TERM 4227 3499411 - 3499395 - g 82 -6.5 -4.8066 | AAGACAATGGAAAAA GCTGGTA TGG TTCCAGC ACCTTATTATTTTGA Shewana3_2921 3499176 - 3499628 + | hypothetical protein TERM 4228 3500550 - 3500580 + T 100 -19.2 -3.16742 | opp_overlap 3500538 GTACCCTTTTGGCAG GGAGATGGTTTCAC GCA GTGAGACCATCTCC TTGCTAAGCCTTCAG TERM 4229 3500606 - 3500636 + T 73 -9.1 -3.4285 | opp_overlap 3500606 TTCAGGGACAAAAAA GCGTACACACTAT TATAC ATGGTATGTACGC TTATGAGTTCCATAA TERM 4230 3500636 - 3500606 - T 100 -9.1 -5.28176 | opp_overlap 3500606 TTCAGGGACAAAAAA GCGTACACACTAT TATAC ATGGTATGTACGC TTATGAGTTCCATAA TERM 4231 3500809 - 3500823 + T 83 -11.4 -3.05498 | opp_overlap 3500809 CCGCGGGATCGAAAA CCGCCA TGG TGGCGG TATCTGTGTCAAATC TERM 4232 3500823 - 3500809 - T 100 -11.4 -4.18018 | opp_overlap 3500809 CCGCGGGATCGAAAA CCGCCA TGG TGGCGG TATCTGTGTCAAATC TERM 4233 3500971 - 3500939 - T 71 -3.4 -4.93595 | AGAAAAATCGAAAAA GCCAAGTGACTG AGACCATTA CGACCACTTGGC GATAAGCATCCGCTA Shewana3_2922 3502495 - 3500984 - | hypothetical protein TERM 4234 3501763 - 3501786 + g 73 -5.4 -4.72029 | gap 1, overlap 3501766 AGACCGACCTAAAGG TGTTATAACCC AAT GGGTTA-GACA TTTTATTACGTTCAG Shewana3_2923 3504075 - 3502723 - | multi anti extrusion protein MatE TERM 4235 3504704 - 3504687 - g 70 -9.1 -3.63627 | gap 1 GGTTTATATGCCAAA GCCC-CCG AGT CGGCGGGC GGTCTGGGGATCAGC TERM 4236 3504875 - 3504889 + G 74 -7.1 -4.30719 | GACCATGGCGTTTTT CCCCA CCTTT TGGGG TTTCTTATCGGGGGC TERM 4237 3505444 - 3505428 - g 70 -8.7 -3.61652 | GGGTTAAATAACGAA GGCACCA AGG TGATGCC AGAAGGCATGCTGAA Shewana3_2924 3504516 - 3506060 + | major facilitator transporter TERM 4238 3506174 - 3506155 - T 100 -12.2 -5.055 | opp_overlap 3506155 GTAAGTTCGAAAAAA GTGAGTGC GTAG GCACTCAC TTTTTTTATTGGGTT TERM 4239 3506155 - 3506174 + T 100 -12.2 -5.83226 | opp_overlap 3506155 GTAAGTTCGAAAAAA GTGAGTGC GTAG GCACTCAC TTTTTTTATTGGGTT Shewana3_2925 3506727 - 3506206 - | hypothetical protein TERM 4240 3507263 - 3507252 - g 74 -4.4 -4.87626 | GCCGAACAGCAAAAA GTGA CGAT TCAC TATCAACTTGCGCCT Shewana3_2926 3507066 - 3507842 + | extracellular solute-binding protein Shewana3_2927 3508992 - 3507880 - | cobalamin synthesis protein, P47K TERM 4241 3509071 - 3509055 - R 100 -15.1 -5.11112 | AAAGCTCAACAAAAA GCGCGCC AAT GGCGCGC TGATAAATGGATAAG Shewana3_2928 3510564 - 3509101 - | DEAD/DEAH box helicase domain-containing protein Shewana3_2929 3513761 - 3510732 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4242 3512087 - 3512073 - G 71 -5.6 -4.55023 | CGTAATATCAGAAAA CAGCGC CAC ACGCCG GTAAGGTTGGCCATC Shewana3_2930 3515460 - 3513871 - | starch synthase catalytic subunit TERM 4243 3514294 - 3514276 - G 73 -3 -5.04987 | overlap 3514279 AAGAGTTTGAAAAAA CAGCCCTA TCT CAGGGTCG CCACTGCCCAGTAGT Shewana3_2931 3516790 - 3515528 - | glucose-1-phosphate adenylyltransferase TERM 4244 3516164 - 3516146 - G 86 -6 -5.06414 | opp_overlap 3516149 CTGTTCGAACAAAAA CTCTGTGT TAA ACACATAG TTGCCCATCGAGGCG Shewana3_2932 3519422 - 3516909 - | glycogen/starch/alpha-glucan phosphorylases TERM 4245 3517205 - 3517231 + g 82 -11.6 -3.68886 | opp_overlap 3517205 3517223, overlap 3517194 GGGACTCGGCGATAA TCCGCTGCGGTT GAT AATCGCAGCGCA TTTGGGTCACTTGCT TERM 4246 3519353 - 3519368 + g 70 -2.5 -5.00616 | gap 1 TTGGCTTACTCGGCG CG-GCC TTAGT GGCACG TTTTTTGGGGGGAAC Shewana3_2933 3521683 - 3519425 - | glycogen debranching enzyme GlgX TERM 4247 3520992 - 3520979 - G 72 -3.8 -4.82901 | GGGCTCGGAGAAAAA TGCC TGAACC GGCA GTAACTCGACGCAAT TERM 4248 3521209 - 3521227 + g 75 -8.8 -3.92659 | opp_overlap 3521209, overlap 3521202 TAGCGGCATCCAAAA GGGGTCGA GTA TCGACCAC TTTGCATTTTGGGAC TERM 4249 3521227 - 3521209 - G 79 -8.8 -4.18494 | opp_overlap 3521209 3521202 TAGCGGCATCCAAAA GGGGTCGA GTA TCGACCAC TTTGCATTTTGGGAC TERM 4250 3521588 - 3521570 - G 77 -8.8 -4.08767 | GGCATGGGCCGAAAA CAGGGCGA AAT TCACCCCG CCATCATCGACCGTC Shewana3_2934 3523917 - 3521680 - | glycogen branching enzyme TERM 4251 3521881 - 3521867 - G 70 -2.7 -4.88067 | overlap 3521868 3521869 AGGTACTCACAAAAA TCCCC GCCTT GGGGC AAGCCGATACGAAAT TERM 4252 3523213 - 3523230 + g 73 -3.3 -5.02476 | overlap 3523186 CATCCATTGTGTATC CGCCCAC GGGT GTTGGTG TTTTTTCGGCACTAT TERM 4253 3523296 - 3523312 + g 74 -7.9 -4.25104 | CCATAGGGTCGGATT TGGCGTG GCG CTCGCCA TTTTGATAAACCAAA TERM 4254 3523824 - 3523787 - G 70 -2.6 -5.00616 | overlap 3523790 GCGTTGCGTAAAAAA CAGCGCACCACCAAGG CCTTAC CCTCGTTGATGCTGTG CATACCGAGCAGGGA Shewana3_2935 3526340 - 3523935 - | 4-alpha-glucanotransferase TERM 4255 3524250 - 3524261 + g 72 -3.6 -4.77036 | GGAGATTAAGCACTG CGCC AGCT GGTG TTTTTCCTGCTCACG TERM 4256 3526503 - 3526517 + H 81 -11.4 -2.78463 | TTATCGCCCAAGCCT TGGCCC ACG GGGCCA TCTCGTAAACGCACT TERM 4257 3527216 - 3527197 - g 73 -5.6 -4.72272 | overlap 3527173 3527198 3527201 CGCGCCGATTAAAAA CGAGGCCG CCGT CGGCATCA GCAACAAACGCGGCA Shewana3_2936 3526850 - 3527485 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 4258 3527499 - 3527516 + T 100 -9.9 -4.79752 | opp_overlap 3527499 3527511 3527513 AGCAAAAATAACAAA GCACTGT AGAT ACAGTGC TTTTATATTATTAGC TERM 4259 3527516 - 3527499 - T 100 -9.9 -4.78157 | opp_overlap 3527499, overlap 3527511 3527513 AGCAAAAATAACAAA GCACTGT AGAT ACAGTGC TTTTATATTATTAGC Shewana3_2937 3528041 - 3527544 - | MarR family transcriptional regulator Shewana3_2938 3528348 - 3529496 + | iron-containing alcohol dehydrogenase TERM 4260 3529625 - 3529589 - f 91 -13.2 -2.70708 | gap 1, opp_overlap 3529594, overlap 3529592 3529593 3529602 AAGCTAACGACATGA GAATCGGCCCAAACAAG GGAG CTTGTTTGGGCCT-TTC TTTTGGGCTGATTCA TERM 4261 3529623 - 3529592 - f 89 -11.6 -3.49858 | opp_overlap 3529594, overlap 3529589 3529593 3529602 CTAACGACATGAGAA TCGGCCCAAACAAG GGAG CTTGTTTGGGCCTT TCTTTTGGGCTGATT TERM 4262 3529622 - 3529593 - f 100 -15.1 -2.69433 | opp_overlap 3529594, overlap 3529592 3529589 3529602 TAACGACATGAGAAT CGGCCCAAACAAG GGAG CTTGTTTGGGCCT TTCTTTTGGGCTGAT TERM 4263 3529594 - 3529621 + F 100 -18.6 -4.67048 | opp_overlap 3529593 3529592 3529589 3529602 AACGACATGAGAATC GGCCCAAACAAG GGAG CTTGTTTGGGCC TTTCTTTTGGGCTGA TERM 4264 3529629 - 3529645 + F 77 -6.5 -4.65895 | overlap 3529631 TTTGGGCCTTTCTTT TGGGCTG ATT CAGCCAA TTTTTCACTACGCCA TERM 4265 3529823 - 3529860 + F 100 -12.7 -4.25104 | opp_overlap 3529821 3529820 3529824, overlap 3529824 3529827 GCAAAAGATGAAGCC AGCTCAGAGGCCCATTC TAAG GAATGGGCCTCTGTCCC TTTTAGTGCCCGCCC TERM 4266 3529824 - 3529859 + F 100 -16.2 -3.14848 | opp_overlap 3529821 3529820 3529824, overlap 3529823 3529827 CAAAAGATGAAGCCA GCTCAGAGGCCCATTC TAAG GAATGGGCCTCTGTCC CTTTTAGTGCCCGCC TERM 4267 3529859 - 3529824 - f 100 -16.2 -2.63041 | opp_overlap 3529824 3529823 3529827, overlap 3529821 3529820 CAAAAGATGAAGCCA GCTCAGAGGCCCATTC TAAG GAATGGGCCTCTGTCC CTTTTAGTGCCCGCC TERM 4268 3529827 - 3529856 + F 100 -20.9 -2.77781 | opp_overlap 3529824 3529821 3529820, overlap 3529824 3529823 AAGATGAAGCCAGCT CAGAGGCCCATTC TAAG GAATGGGCCTCTG TCCCTTTTAGTGCCC Shewana3_2939 3530192 - 3530566 + | hypothetical protein TERM 4269 3530627 - 3530648 + F 100 -13.1 -5.13722 | opp_overlap 3530627 GTGAAATAGCAACAA TGCCAGAGT TTAT ACTCTGGCA TTTTGTTTTACTCAC TERM 4270 3530648 - 3530627 - f 100 -13.1 -3.8613 | opp_overlap 3530627 GTGAAATAGCAACAA TGCCAGAGT TTAT ACTCTGGCA TTTTGTTTTACTCAC Shewana3_2940 3530884 - 3531129 + | hypothetical protein TERM 4271 3531148 - 3531121 - T 71 -9.8 -2.60508 | opp_overlap 3531121 3531122 3531124, overlap 3531120 3531118 GAACTGACAGAAGAT TCGGAGTGACGC CCAT GCGTCACTCTGC TTTATCGGGTCTCAA TERM 4272 3531121 - 3531148 + T 100 -12 -3.91144 | opp_overlap 3531121 3531120 3531118, overlap 3531122 3531124 GAACTGACAGAAGAT TCGGAGTGACGC CCAT GCGTCACTCTGC TTTATCGGGTCTCAA TERM 4273 3531122 - 3531147 + T 100 -15.5 -2.94365 | opp_overlap 3531121 3531120 3531118, overlap 3531121 3531124 AACTGACAGAAGATT CGGAGTGACGC CCAT GCGTCACTCTG CTTTATCGGGTCTCA TERM 4274 3531124 - 3531145 + T 100 -14.5 -3.02186 | opp_overlap 3531121 3531120 3531118, overlap 3531122 3531121 CTGACAGAAGATTCG GAGTGACGC CCAT GCGTCACTC TGCTTTATCGGGTCT Shewana3_2941 3531535 - 3531167 - | thioesterase superfamily protein TERM 4275 3531729 - 3531709 - R 100 -11.9 -5.75478 | overlap 3531711 AATTAGATAAAAAAA TAGCGACTC AAA GAGTCGCCA AGCTCAGGCAAGCAA TERM 4276 3531727 - 3531711 - R 100 -12.3 -4.50122 | overlap 3531709 TTAGATAAAAAAATA GCGACTC AAA GAGTCGC CAAGCTCAGGCAAGC TERM 4277 3531822 - 3531791 - R 100 -10.1 -4.65895 | overlap 3531776 GGTTTGACTTAAAAA CCCGTGCAGCACA TGTAGG CGAACTGCACGGG GGACAACAGCTGCAA TERM 4278 3531845 - 3531829 - R 71 -8.7 -3.30124 | overlap 3531831 CTGCACGGGGGACAA CAGCTGC AAT GCAGCTA AACACAGGGCTTACG Shewana3_2942 3533232 - 3531910 - | isocitrate lyase TERM 4279 3533288 - 3533266 - R 77 -10.6 -3.14931 | overlap 3533271 GTGATGTTGTAGCAA GTGAAGCTGC CCC ACAGCCTCAC CCTGCCCATTGGTTT Shewana3_2943 3535025 - 3533376 - | malate synthase TERM 4280 3534308 - 3534295 - G 73 -5.3 -4.63218 | CTTTCTTCAACAAAA GCAAA CACT TTTGC CCACCAACGCGCTTC TERM 4281 3535237 - 3535225 - H 77 -6.3 -4.67168 | AAAAACCTCTAAAAA TTGGT CTG ACCAA GACAAGAAGTTCAAT TERM 4282 3535662 - 3535640 - H 89 -7.2 -5.08015 | AACCCAAAAAATAAA TCACTTTTTT ATA AAAAAAATGA AACAAATTAGAATTC TERM 4283 3536426 - 3536402 - g 70 -2.9 -4.81359 | gap 1, overlap 3536405 AATCCAAACACAAAA TCACCACTGA AGTTGG CCAGTGG-GA TACCTACTCGCTCGC Shewana3_2944 3535861 - 3538332 + | TonB-dependent receptor TERM 4284 3538381 - 3538358 - T 100 -15.4 -4.08948 | opp_overlap 3538358, overlap 3538361 TAAGCCCATAAACAA CAAGAGAGCC CATC GGCTCTCTTG TTTGTTTTAGCCAGC TERM 4285 3538358 - 3538381 + T 100 -15.4 -4.64861 | opp_overlap 3538358 3538361 TAAGCCCATAAACAA CAAGAGAGCC CATC GGCTCTCTTG TTTGTTTTAGCCAGC TERM 4286 3538378 - 3538361 - T 100 -11.3 -4.15703 | opp_overlap 3538358, overlap 3538358 GCCCATAAACAACAA GAGAGCC CATC GGCTCTC TTGTTTGTTTTAGCC Shewana3_2945 3540170 - 3538401 - | potassium efflux system protein TERM 4287 3538503 - 3538518 + g 81 -6.1 -4.93296 | ATGTTGATGGGCCGA GCTGG CTATCA CCAGC TTTTTATCGTGCTCG Shewana3_2946 3542121 - 3540394 - | diguanylate cyclase Shewana3_2947 3542397 - 3542185 - | hypothetical protein Shewana3_2948 3543233 - 3542442 - | uroporphyrin-III C/tetrapyrrole methyltransferase TERM 4288 3543667 - 3543651 - g 83 -5.1 -5.16071 | opp_overlap 3543664 AATGATCAATAAAAA GCAAAGT CTT ACCCTGC TGAGCGCCATTGCGC Shewana3_2949 3543604 - 3544128 + | SmpA/OmlA domain-containing protein TERM 4289 3544184 - 3544156 - T 80 -10.4 -3.54307 | opp_overlap 3544158 3544164, overlap 3544158 3544164 AACACTTGCCTTAAA CACAAAAAGCGC TCATG GCGCTTTTTGTT TGTTCGTGTTGCGGA TERM 4290 3544182 - 3544158 - T 100 -13 -3.34715 | opp_overlap 3544158 3544164, overlap 3544156 3544164 CACTTGCCTTAAACA CAAAAAGCGC TCATG GCGCTTTTTG TTTGTTCGTGTTGCG TERM 4291 3544158 - 3544182 + T 100 -13.7 -4.33153 | opp_overlap 3544158 3544156 3544164, overlap 3544164 CACTTGCCTTAAACA CAAAAAGCGCT CAT GGCGCTTTTTG TTTGTTCGTGTTGCG TERM 4292 3544176 - 3544164 - T 87 -6.2 -5.19879 | opp_overlap 3544158 3544164, overlap 3544158 3544156 CCTTAAACACAAAAA GCGC TCATG GCGC TTTTTGTTTGTTCGT TERM 4293 3544164 - 3544176 + T 91 -6.9 -5.48514 | opp_overlap 3544164 3544158 3544156, overlap 3544158 CCTTAAACACAAAAA GCGCT CAT GGCGC TTTTTGTTTGTTCGT Shewana3_2950 3544539 - 3544204 - | hypothetical protein Shewana3_2951 3544966 - 3544529 - | cyclase/dehydrase TERM 4294 3545257 - 3545244 - g 100 -5.9 -5.63857 | overlap 3545246 AAAAACTCAAAAAAA GCCGC GCCT GCGAC AATCGCACGCAATAA smpB 3545220 - 3545711 + | SsrA-binding protein TERM 4295 3546146 - 3546175 + F 78 -10.1 -3.50393 | opp_overlap 3546149 3546153, overlap 3546153 CTCCACCAAATGTAA GAACGAAGACGTC TCAG GACGTCTTTTTTC TTATCTAAAATAAGA TERM 4296 3546168 - 3546153 - f 73 -9 -3.56576 | opp_overlap 3546146 3546153, overlap 3546149 AAATGTAAGAACGAA GACGTC TCAG GACGTC TTTTTTCTTATCTAA TERM 4297 3546153 - 3546168 + F 100 -9 -5.60689 | opp_overlap 3546153 3546149, overlap 3546146 AAATGTAAGAACGAA GACGTC TCAG GACGTC TTTTTTCTTATCTAA Shewana3_2953 3546379 - 3547605 + | phage integrase family protein Shewana3_2954 3547630 - 3548439 + | hypothetical protein Shewana3_2955 3549000 - 3549626 + | hypothetical protein Shewana3_2956 3550760 - 3549897 - | hypothetical protein Shewana3_2957 3551529 - 3550768 - | HNH endonuclease TERM 4298 3550809 - 3550826 + g 70 -8.3 -3.70902 | ATTCTTTGAGTTTAT CGACCGC CATC GCGGGCG TTTCAGTATGCAGCA Shewana3_2958 3552383 - 3551574 - | hypothetical protein Shewana3_2959 3553984 - 3552383 - | hypothetical protein TERM 4299 3553245 - 3553229 - G 71 -5 -4.57073 | overlap 3553231 TAGCTCGTCCAAAAA GCGGCG AACAA CGCCCC GCGCACCCCAAAACA TERM 4300 3553431 - 3553445 + g 82 -11.4 -3.65351 | opp_overlap 3553430 3553429 3553427 TTAGCATAGAACAGC GGGCGA ATA TCGCCC TTTAAATCCAACTCA Shewana3_2960 3555768 - 3554005 - | restriction modification system DNA specificity subunit TERM 4301 3554244 - 3554254 + g 100 -3.2 -6.35605 | TCTGCTTACTCATAT GGCT ACC AGTC TTTTTTTTTATGTTG TERM 4302 3554447 - 3554463 + g 74 -4.4 -4.75372 | gap 1, opp_overlap 3554425, overlap 3554443 AGGTTATTCACCCGC GCCAGCG CAGC CG-TGGC TTTTTGCTCAATGCT TERM 4303 3554845 - 3554821 - G 77 -10.8 -3.62518 | opp_overlap 3554821 3554819 3554818 TGAAAGACTTTGAAA CGCAGAACTT GTTGT AAGTCCTGCG TCATTTATATTTACG Shewana3_2961 3557360 - 3555768 - | N-6 DNA methylase TERM 4304 3556380 - 3556400 + g 79 -8.1 -4.2803 | GTTGTCGGGCAGCAC CACGGCGGC GCG GCCACCGGG TTTTAGGTTGCGGTA TERM 4305 3556781 - 3556764 - G 70 -3.3 -4.8622 | gap 1, overlap 3556765 3556766 GGCGGCAATCAAAAA GCCTGCGG TGC CCGCTG-C TGGGTCCTGAATGTA Shewana3_2962 3558514 - 3557387 - | filamentation induced by cAMP protein Fic TERM 4306 3558034 - 3558066 + g 74 -8.5 -3.97042 | GGATCACCGCTTCAC CTGCTGGTGGGGT GTAAATG ACTTCACCAGTAG TTTGATTGCTGATCG TERM 4307 3558199 - 3558185 - G 77 -10 -3.80858 | opp_overlap 3558195 3558197, overlap 3558197 TGATAATTGATGAAA GCCTTG ATT CAAGGC ACTACGGTAACGAAG TERM 4308 3558558 - 3558523 - R 85 -5.6 -5.21236 | gap 1, opp_overlap 3558548 AATCCATAAGAAAAA TCGACACGAAATTACGT GGT ACGCAGTTT-ATGTCGA TGCCATCGACATATC TERM 4309 3558618 - 3558644 + r 74 -9.6 -3.35992 | opp_overlap 3558618, overlap 3558610 ATCGACACATTATAA GTTAATGTCGAT TAC ATAGACATTAAC TTGCTTCCCATAAAT TERM 4310 3558644 - 3558618 - R 76 -9.6 -3.50045 | opp_overlap 3558610 3558618 ATCGACACATTATAA GTTAATGTCGAT TAC ATAGACATTAAC TTGCTTCCCATAAAT hsdR 3562143 - 3558640 - | type I restriction enzyme EcoKI subunit R Shewana3_2964 3562388 - 3563338 + | hypothetical protein TERM 4311 3563335 - 3563349 + T 73 -2.9 -5.14563 | opp_overlap 3563335 CAAAGAACAAAATCA TTAGT GATTG ACTAA TTTTTTAGTAACACA TERM 4312 3563485 - 3563456 - T 100 -12.3 -4.86731 | opp_overlap 3563459, overlap 3563459 CCGCCCCAAATAAAA TAAGGACTTAGCA GAAA TGCTAAGTCCTTT TTCTTTTCAGTGTCC TERM 4313 3563459 - 3563482 + T 100 -14 -5.48213 | opp_overlap 3563456 3563459 CCCCAAATAAAATAA GGACTTAGCA GAAA TGCTAAGTCC TTTTTCTTTTCAGTG TERM 4314 3563482 - 3563459 - T 100 -14 -4.54026 | opp_overlap 3563459, overlap 3563456 CCCCAAATAAAATAA GGACTTAGCA GAAA TGCTAAGTCC TTTTTCTTTTCAGTG TERM 4315 3563955 - 3563920 - T 75 -8.2 -3.85165 | overlap 3563942 TAGCTCAAATCCAAA CTGACCGCGGCACACT AAAA AATGGGCTACGGCCAG TTCCAGTCTGAGCGA TERM 4316 3563954 - 3563942 - T 75 -3.3 -5.21709 | overlap 3563920 CGGCACACTAAAAAA TGGGC TAC GGCCA GTTCCAGTCTGAGCG Shewana3_2965 3565682 - 3563982 - | hypothetical protein TERM 4317 3564366 - 3564355 - G 70 -2.2 -5.00616 | gap 1, opp_overlap 3564355 CCTCGCTGTAAAAAA GC-GC CAT GCAGC TTATCGTTTTTATAA TERM 4318 3567500 - 3567520 + r 73 -8.9 -3.5394 | CTGCTCGAGCTCAAG GCCGCGCTC TGC GAGCATGGC TTTCCAGGCGGGTTT TERM 4319 3568636 - 3568657 + r 82 -6.6 -4.75174 | opp_overlap 3568636 TCCGCTAATAAAAAA GCACAATC CAATTA GGTTGTGC TTTTTAGATTAAATA TERM 4320 3568657 - 3568636 - R 87 -5.2 -5.4505 | gap 1, opp_overlap 3568636 TCCGCTAATAAAAAA GCACAATCC AATTA GG-TTGTGC TTTTTAGATTAAATA Shewana3_2967 3568994 - 3568695 - | heavy metal transport/detoxification protein Shewana3_2968 3569353 - 3568991 - | mercuric transport protein MerT, putative TERM 4321 3569167 - 3569155 - GR 72 -6.3 -4.35675 | AAAAACCCAGCAAAA TCAAC CCG GTTGA TAGAAGCAACATGGG TERM 4322 3569304 - 3569284 - GR 79 -11.1 -3.13743 | overlap 3569296 AAAGGCTAGAGGCAA CCGCCGC AACAACG GCGGCGG CCATGGTGGCAAGCA Shewana3_2969 3570464 - 3569325 - | transglutaminase domain-containing protein TERM 4323 3570690 - 3570665 - R 100 -12.7 -5.20154 | opp_overlap 3570665 3570680 ATAGAAGCCAAAAAA CAGGTACAGCA CGAC TGCTATACCTG TTTGTAAAGGAGGTA TERM 4324 3570665 - 3570690 + r 86 -10.5 -3.86015 | opp_overlap 3570665, overlap 3570680 ATAGAAGCCAAAAAA CAGGTACAGCA CGAC TGCTATACCTG TTTGTAAAGGAGGTA Shewana3_2970 3571982 - 3570711 - | HAAAP family transport protein TERM 4325 3572072 - 3572053 - H 73 -3.6 -4.9448 | overlap 3572055 3572056 ACTCAGCAAACAAAA TACTCAAC TTTT GTTGAACA AAGTGCCGTCGCTCA Shewana3_2971 3572238 - 3572621 + | putative endoribonuclease L-PSP Shewana3_2972 3572642 - 3573916 + | hypothetical protein Shewana3_2973 3573958 - 3574638 + | YheO domain-containing protein TERM 4326 3574636 - 3574679 + T 100 -18.6 -3.21466 | opp_overlap 3574646, overlap 3574642 GACAAAAGCCTCGCT TAAAGATAAAGGGCTAAGAT GAAC ATCTTAGCCCTTTGTTTTTA TTAGCTTGATAGCTT TERM 4327 3574642 - 3574673 + T 100 -15.4 -5.13741 | opp_overlap 3574646, overlap 3574636 AGCCTCGCTTAAAGA TAAAGGGCTAAGAT GAAC ATCTTAGCCCTTTG TTTTTATTAGCTTGA TERM 4328 3574669 - 3574646 - T 100 -14 -4.32857 | opp_overlap 3574642 3574636 TCGCTTAAAGATAAA GGGCTAAGAT GAAC ATCTTAGCCC TTTGTTTTTATTAGC Shewana3_2974 3576446 - 3574716 - | hypothetical protein TERM 4329 3576283 - 3576272 - G 78 -5.8 -4.75174 | overlap 3576273 GACCTAAGGCAAAAA TGGC TAGC GCCA CGCCAACCCAGGGAA TERM 4330 3576292 - 3576302 + g 100 -6.8 -5.75342 | AGCGCCACGCCAACC CAGG GAA CCTG TTTTTTTTCCACAAC TERM 4331 3576493 - 3576463 - R 100 -14.2 -4.08216 | opp_overlap 3576470, overlap 3576465 3576470 CCATTGGCCTTAAAA CATAAAAGCAGCGA ATA TCGCTGCTTTTATT CACATCATCCACAGG TERM 4332 3576491 - 3576465 - R 100 -16.8 -3.63922 | opp_overlap 3576470, overlap 3576463 3576470 ATTGGCCTTAAAACA TAAAAGCAGCGA ATA TCGCTGCTTTTA TTCACATCATCCACA TERM 4333 3576470 - 3576486 + r 100 -12.3 -4.66318 | opp_overlap 3576465 3576463 3576470 CCTTAAAACATAAAA GCAGCGA ATA TCGCTGC TTTTATTCACATCAT TERM 4334 3576486 - 3576470 - R 100 -12.3 -4.89567 | opp_overlap 3576470, overlap 3576465 3576463 CCTTAAAACATAAAA GCAGCGA ATA TCGCTGC TTTTATTCACATCAT Shewana3_2975 3577429 - 3576515 - | hypothetical protein Shewana3_2976 3577667 - 3578161 + | hypothetical protein TERM 4335 3578428 - 3578396 - g 95 -11.9 -4.30719 | opp_overlap 3578393, overlap 3578397 CGCGGCCATAACAAA CGCGTGCAGCAAGGC AGC GCCGTGCTGCATGCC GAAATGGATTGCCTC TERM 4336 3578427 - 3578397 - g 89 -15.4 -3.1811 | opp_overlap 3578393, overlap 3578396 GCGGCCATAACAAAC GCGTGCAGCAAGGC AGC GCCGTGCTGCATGC CGAAATGGATTGCCT Shewana3_2977 3578276 - 3578713 + | CMP/dCMP deaminase, zinc-binding TERM 4337 3578701 - 3578719 + F 73 -3.9 -5.04987 | opp_overlap 3578701 ACTGTGGAACGAAGA TATTGGT GAATA GCCAATA TTTTTTAAGCCTATT TERM 4338 3579168 - 3579181 + F 70 -8.1 -3.67622 | ATCAACTCAATCTCG CCGAG CAGA CTCGG TTCATTTTCCCAATA Shewana3_2978 3579205 - 3580449 + | hypothetical protein Shewana3_2979 3580427 - 3580945 + | hypothetical protein Shewana3_2980 3581562 - 3580954 - | TetR family transcriptional regulator Shewana3_2981 3581814 - 3582293 + | HPP family protein TERM 4339 3582402 - 3582377 - T 100 -10.6 -4.90296 | opp_overlap 3582381, overlap 3582381 AAAAGTGCATAAAAA TAAAGGGCAA GTGAGA TTGCCCTTTA TCAAAAACCGTAAGC TERM 4340 3582398 - 3582381 - T 86 -7 -4.96501 | opp_overlap 3582381, overlap 3582377 GTGCATAAAAATAAA GGGCAA GTGAGA TTGCCC TTTATCAAAAACCGT Shewana3_2982 3583752 - 3582424 - | short chain fatty acid transporter TERM 4341 3584129 - 3584101 - g 85 -3.8 -5.46706 | gap 1, overlap 3584105 3584108 3584119 AGCGCAAAACAAAAA CCAAGAAGG-GGT GAAA ACCACCGCCTCGG GATTGCAATATCAAG Shewana3_2983 3583973 - 3584443 + | peptidylprolyl isomerase, FKBP-type TERM 4342 3584486 - 3584470 - T 100 -13.7 -5.08088 | opp_overlap 3584470 AATCCTTAATAAAAA GCCCTGC ATT GCAGGGC TTTTTTAATGTATTT TERM 4343 3584470 - 3584486 + T 100 -13.7 -5.28755 | opp_overlap 3584470 AATCCTTAATAAAAA GCCCTGC ATT GCAGGGC TTTTTTAATGTATTT Shewana3_2984 3587120 - 3584514 - | glycosyl hydrolase family chitinase TERM 4344 3586223 - 3586249 + g 71 -5.9 -4.36914 | gap 1 GTAAAAACTCCTTCA CTGAG-GCGACA AAGG TGTCGCGCTTGG TTTTATCCCCCAAAA TERM 4345 3587286 - 3587301 + r 74 -7.6 -3.93061 | CGGAGGCTTTGCGTC CCAATC TTTC GATTGG TTTGCCTTTTACACT Shewana3_2985 3588600 - 3587809 - | ROK family protein TERM 4346 3588216 - 3588200 - G 74 -8 -4.07568 | GTTGCCCCCGTAAAA GCCTTG CCGCT CAAGGC GATCGACATGCCAAT TERM 4347 3588506 - 3588518 + g 70 -3.3 -4.82162 | TCAATTTTAAAGCCT TCACC CGT GGGGA TTTTATATTGTTCTG TERM 4348 3589850 - 3589828 - g 76 -7.6 -4.36914 | opp_overlap 3589830, overlap 3589831 CGCTTGGGCACAAAA TATCGCCCGC GAT GCTGGCGCTA AGTTAATCGCCGGTA Shewana3_2986 3588962 - 3590776 + | peptidase M24 TERM 4349 3590823 - 3590794 - f 88 -9.3 -4.4017 | opp_overlap 3590799, overlap 3590799 TTAAGTGGCACAAAA CTAAAGCCCAAGC CAAT GCTTGGGCTTTTT ATTTAGAGTCGCTTC TERM 4350 3590818 - 3590799 - f 100 -13.6 -4.26881 | opp_overlap 3590799, overlap 3590794 TGGCACAAAACTAAA GCCCAAGC CAAT GCTTGGGC TTTTTATTTAGAGTC TERM 4351 3590799 - 3590818 + F 100 -13.6 -5.28942 | opp_overlap 3590799 3590794 TGGCACAAAACTAAA GCCCAAGC CAAT GCTTGGGC TTTTTATTTAGAGTC TERM 4352 3591068 - 3591056 - f 80 -6.3 -4.90917 | AAAGCGAATTAAAAA TGCAA TAT TTGCA GAAACTTACAAAATT TERM 4353 3591159 - 3591146 - f 73 -3.9 -4.99638 | overlap 3591154 ATACCCACACAAAAA TGATA CCAT TATCA CATAATAAGCCGACT TERM 4354 3592656 - 3592644 - g 71 -6.9 -4.25104 | overlap 3592645 CTTTGCCCAGCAAAA CGCGG TGG CCGCA GATCAGCAGCGCCAA Shewana3_2987 3591250 - 3592818 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 4355 3592827 - 3592858 + F 100 -15.3 -2.66291 | TGGCTAGTACTCCCG TCGCGCCATTATC AACTAA GATGATGGCGCGA TACTCTCCCTCTATG Shewana3_2988 3593167 - 3594468 + | DEAD/DEAH box helicase domain-containing protein TERM 4356 3594494 - 3594523 + T 100 -16.7 -3.12351 | opp_overlap 3594494 3594501, overlap 3594501 CTATCACCTATCCAA TAAAAAAGCGTCC TAGT GGACGCTTTTTTA TTGAGTCTAAACGAC TERM 4357 3594523 - 3594494 - T 100 -16.7 -3.08464 | opp_overlap 3594494 3594501, overlap 3594501 CTATCACCTATCCAA TAAAAAAGCGTCC TAGT GGACGCTTTTTTA TTGAGTCTAAACGAC TERM 4358 3594501 - 3594516 + T 100 -10.4 -5.49234 | opp_overlap 3594494 3594501, overlap 3594494 CTATCCAATAAAAAA GCGTCC TAGT GGACGC TTTTTTATTGAGTCT TERM 4359 3594516 - 3594501 - T 100 -10.4 -5.4833 | opp_overlap 3594501 3594494, overlap 3594494 CTATCCAATAAAAAA GCGTCC TAGT GGACGC TTTTTTATTGAGTCT Shewana3_2989 3595844 - 3594549 - | hypothetical protein Shewana3_2990 3597044 - 3596157 - | hypothetical protein Shewana3_2991 3597334 - 3597981 + | redoxin domain-containing protein TERM 4360 3597999 - 3598032 + F 72 -9.8 -2.84602 | gap 2, opp_overlap 3597999, overlap 3597998 3598001 CATCCACCGTCCAAA CAGCCGCTAAGAATCG TTAT CGATT-T-AGCGGCTG CTTTGCTAAACTAGC TERM 4361 3598032 - 3597999 - f 78 -9.8 -3.55761 | gap 2, opp_overlap 3597999 3597998 3598001 CATCCACCGTCCAAA CAGCCGCTAAGAATCG TTAT CGATT-T-AGCGGCTG CTTTGCTAAACTAGC Shewana3_2992 3598110 - 3598745 + | hypothetical protein TERM 4362 3598891 - 3598906 + G 72 -3.9 -4.82756 | overlap 3598892 CGTATTCTCTATCGT TGGCG AGCGCA CGCCG TTTTATTACTTCTGT Shewana3_2993 3598864 - 3599613 + | amino acid ABC transporter periplasmic protein Shewana3_2994 3600021 - 3599713 - | hypothetical protein Shewana3_2995 3600972 - 3600412 - | PfpI family intracellular peptidase TERM 4363 3601095 - 3601108 + r 81 -9.5 -3.83205 | opp_overlap 3601095 TCAGGCATAAAAAAA GCGCC CGCA GGCGC TTTAATCTAAACCAT TERM 4364 3601108 - 3601095 - R 100 -9.5 -5.64274 | opp_overlap 3601095 TCAGGCATAAAAAAA GCGCC CGCA GGCGC TTTAATCTAAACCAT Shewana3_2996 3602907 - 3601129 - | band 7 protein TERM 4365 3601877 - 3601899 + g 85 -7.6 -4.79223 | overlap 3601879 3601881 GCAGACTCTTCTTCC GACTTCGCGG CTA CCGCGATGTG TTTTTCCTGCTCTGC TERM 4366 3601879 - 3601897 + g 84 -10.2 -4.01045 | overlap 3601877 3601881 AGACTCTTCTTCCGA CTTCGCGG CTA CCGCGATG TGTTTTTCCTGCTCT TERM 4367 3601881 - 3601895 + g 79 -11.4 -3.58504 | overlap 3601879 3601877 ACTCTTCTTCCGACT TCGCGG CTA CCGCGA TGTGTTTTTCCTGCT TERM 4368 3602361 - 3602374 + g 72 -3.7 -4.84359 | TCAAAGAAACGGATT CGAGC TCTA GCCCG TTTTTCTCGAGATCG Shewana3_2997 3603576 - 3602941 - | hypothetical protein TERM 4369 3603703 - 3603693 - R 84 -2.6 -5.63517 | TTTCCAAACAAAAAA TTTA CCC TAAA ACGGATTTTGACTAA Shewana3_2998 3604265 - 3603699 - | hypothetical protein Shewana3_2999 3604335 - 3605840 + | peptidase M32, carboxypeptidase Taq metallopeptidase Shewana3_3000 3605960 - 3606454 + | GCN5-related N-acetyltransferase Shewana3_3001 3606451 - 3606804 + | hypothetical protein Shewana3_3002 3606842 - 3607099 + | hypothetical protein Shewana3_3003 3607139 - 3607648 + | RDD domain-containing protein TERM 4370 3607718 - 3607733 + T 100 -10.4 -5.7946 | opp_overlap 3607718 TGCCCCAATAAAAAA CGACGC CATG GCGTCG TTTTTTTATTACCCG TERM 4371 3607733 - 3607718 - T 100 -10.4 -5.4505 | opp_overlap 3607718 TGCCCCAATAAAAAA CGACGC CATG GCGTCG TTTTTTTATTACCCG Shewana3_3004 3608813 - 3607755 - | permease YjgP/YjgQ family protein Shewana3_3005 3609922 - 3608810 - | permease YjgP/YjgQ family protein TERM 4372 3611333 - 3611356 + G 70 -11 -2.56271 | opp_overlap 3611345, overlap 3611332 3611345 GGCGCCTGTGTGATT GCCTTAGGCA AACA TGCCTCAGGC CTGTTCTCATCACAC Shewana3_3006 3610178 - 3611686 + | leucyl aminopeptidase TERM 4373 3611706 - 3611724 + F 100 -13.2 -5.46657 | opp_overlap 3611706 TAATAGCACTGAAAA GGCGAAGA ATT TCTTCGCC TTTTTTATTGGGCTC TERM 4374 3611724 - 3611706 - f 100 -13.2 -4.23723 | opp_overlap 3611706 TAATAGCACTGAAAA GGCGAAGA ATT TCTTCGCC TTTTTTATTGGGCTC TERM 4375 3611978 - 3611950 - f 82 -5.9 -5.05577 | opp_overlap 3611956, overlap 3611956 AAACGAAAGTAAAAA TCCAAAGCCTCCC ACT GGGAGGCTTTTTC GTCTTAAACGCTCGA TERM 4376 3611956 - 3611972 + F 100 -13.7 -4.87626 | opp_overlap 3611950 3611956 AAGTAAAAATCCAAA GCCTCCC ACT GGGAGGC TTTTTCGTCTTAAAC TERM 4377 3611972 - 3611956 - f 100 -13.7 -4.02315 | opp_overlap 3611956, overlap 3611950 AAGTAAAAATCCAAA GCCTCCC ACT GGGAGGC TTTTTCGTCTTAAAC Shewana3_3007 3612019 - 3614022 + | chorismate mutase / prephenate dehydratase TERM 4378 3614077 - 3614049 - T 80 -10.3 -3.44186 | opp_overlap 3614051 3614053, overlap 3614051 3614053 AAGGATACTAAGGAA CATACAGCCACGA ATA TCGTGGCTGTCTT GTTTAGAACTTAGGC TERM 4379 3614051 - 3614075 + T 100 -12.9 -3.94 | opp_overlap 3614051 3614049 3614053, overlap 3614053 GGATACTAAGGAACA TACAGCCACGA ATA TCGTGGCTGTC TTGTTTAGAACTTAG TERM 4380 3614075 - 3614051 - T 100 -12.9 -3.28487 | opp_overlap 3614051 3614053, overlap 3614049 3614053 GGATACTAAGGAACA TACAGCCACGA ATA TCGTGGCTGTC TTGTTTAGAACTTAG TERM 4381 3614073 - 3614053 - T 100 -15.5 -3.20226 | opp_overlap 3614051 3614053, overlap 3614051 3614049 ATACTAAGGAACATA CAGCCACGA ATA TCGTGGCTG TCTTGTTTAGAACTT TERM 4382 3614053 - 3614073 + T 100 -15.5 -3.55603 | opp_overlap 3614053 3614051 3614049, overlap 3614051 ATACTAAGGAACATA CAGCCACGA ATA TCGTGGCTG TCTTGTTTAGAACTT Shewana3_3008 3615476 - 3614307 - | methyl-accepting chemotaxis sensory transducer Shewana3_3009 3615857 - 3615522 - | hypothetical protein TERM 4383 3615882 - 3615906 + r 70 -7.9 -3.67864 | gap 1 CCAGCCAGACGATGG GAC-AGGGCG TTACTC CGCCCTCGTC TTTAACCTTACGTTC Shewana3_3010 3617163 - 3616021 - | oxidoreductase FAD-binding subunit TERM 4384 3617195 - 3617166 - R 100 -16.6 -3.35679 | TCTTTGTATCCATAA CACTGCGGCTTT AACGCG AAAGCCGCAGTG ACTCCATGCATAAAT Shewana3_3011 3618879 - 3617215 - | hydroxylamine reductase TERM 4385 3619053 - 3619071 + r 100 -8.8 -5.47821 | opp_overlap 3619054, overlap 3619054 AAAAACCTAAAAAAA AGCCCATC AAA GATGGGCA TTTTTTTGGCTAACT TERM 4386 3619054 - 3619070 + r 100 -12.3 -3.87608 | opp_overlap 3619054, overlap 3619053 AAAACCTAAAAAAAA GCCCATC AAA GATGGGC ATTTTTTTGGCTAAC TERM 4387 3619070 - 3619054 - R 100 -12.3 -5.91981 | opp_overlap 3619054 3619053 AAAACCTAAAAAAAA GCCCATC AAA GATGGGC ATTTTTTTGGCTAAC tyrA 3620235 - 3619096 - | bifunctional chorismate mutase/prephenate dehydrogenase TERM 4388 3619924 - 3619936 + g 70 -3.3 -4.77896 | opp_overlap 3619914 ACCAACAATCACGAC CGAAC CGA GATCG TTTTTCACTTGCTTA Shewana3_3013 3621389 - 3620298 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 4389 3621512 - 3621487 - R 74 -9.9 -3.09834 | overlap 3621489 GAGGCCACCACGTAA CATTGTAATGA TACA CCATTACAATG AGCGACCAATATGCC TERM 4390 3621649 - 3621621 - R 100 -14 -3.09234 | opp_overlap 3621628, overlap 3621628 ACAAACTGCAGGCAA CAAAAAACCGCC ACGAG GGCGGTTTTCTG TGCGAACACTACGTC TERM 4391 3621642 - 3621628 - R 100 -8.5 -5.4833 | opp_overlap 3621628, overlap 3621621 GCAGGCAACAAAAAA CCGCC ACGAG GGCGG TTTTCTGTGCGAACA TERM 4392 3621628 - 3621642 + r 87 -8.5 -4.52589 | opp_overlap 3621628 3621621 GCAGGCAACAAAAAA CCGCC ACGAG GGCGG TTTTCTGTGCGAACA rplS 3622040 - 3621687 - | 50S ribosomal protein L19 TERM 4393 3622006 - 3622021 + g 76 -7.6 -4.36063 | overlap 3622010 ACGTCTTGTTTCATT TGCTCA TCGT TGAGCA TTTTAATGATGTTGT trmD 3622821 - 3622075 - | tRNA (guanine-N(1)-)-methyltransferase TERM 4394 3622329 - 3622301 - G 77 -9.5 -3.75665 | opp_overlap 3622320, overlap 3622302 GGACAGTCCAGTAAA CCGTCGGAGAAAG AAT CTTGCTCCGCCGA AGCTTGTTTTCCTAG rimM 3623367 - 3622837 - | 16S rRNA-processing protein rpsP 3623636 - 3623388 - | 30S ribosomal protein S16 TERM 4395 3623623 - 3623639 + g 71 -6.5 -4.22652 | opp_overlap 3623623 CCACCACGAGCTAAA CGAATGG TAA CCATGCG TTTTCAATCCTCTAA TERM 4396 3623710 - 3623681 - R 84 -2.7 -5.67529 | opp_overlap 3623681 AAGCAAAAATAAAAA CTGGAACCCCGTG TTCG CGAAGAGTCCCAG ATAGAAAGCCGGAAG Shewana3_3018 3625228 - 3623855 - | signal recognition particle protein TERM 4397 3623918 - 3623939 + g 76 -5.1 -4.81734 | gap 1 GCGCATCATCTTCTG GATG-CCGCC CTT GGCCGACATC TTTTTCATCATCTTT TERM 4398 3624040 - 3624056 + g 73 -5.1 -4.6856 | GGCGCTTACGTGAGC CCTTGAT TAA ATCGGGG TTTTTGCGCTCTTTG TERM 4399 3624188 - 3624200 + g 70 -3.4 -4.83269 | TTCAATCATGCTCAT CATG CCGCC CATG TTTTTCATCTGCTGT Shewana3_3019 3625517 - 3626305 + | cytochrome c assembly protein TERM 4400 3626351 - 3626309 - f 78 -9.3 -3.67775 | opp_overlap 3626307 3626321 ATTCTTAGTTAATAA TTTCAAGTCAGCTTAGG CGCTAATTC CCTGAGCTGACTTGACA CCCTGTTTATTTCTC TERM 4401 3627507 - 3627496 - g 71 -5.8 -4.30977 | overlap 3627492 AATAAAGAAATGAAA TGGG ATTT CCCA ACCGATGGCCCTAAA Shewana3_3020 3626407 - 3627678 + | hypothetical protein TERM 4402 3627696 - 3627723 + T 100 -16.4 -3.9941 | opp_overlap 3627696 TTTGTAGATAAAAAA TCGGCTGGTTCC AAAT GGAATCAGCCGA TTTCCTTCTCCCCCA TERM 4403 3627723 - 3627696 - T 100 -14.2 -5.36441 | opp_overlap 3627696 TTTGTAGATAAAAAA TCGGCTGGTTCC AAAT GGAATCAGCCGA TTTCCTTCTCCCCCA Shewana3_3021 3628280 - 3627744 - | hypothetical protein TERM 4404 3628414 - 3628429 + r 89 -10.4 -3.96327 | opp_overlap 3628414 TAAGGCAATAAAAAA GGGAGC TAAA GCTCCC TTTATAGTAACGGGT TERM 4405 3628429 - 3628414 - R 100 -10.4 -5.5074 | opp_overlap 3628414 TAAGGCAATAAAAAA GGGAGC TAAA GCTCCC TTTATAGTAACGGGT Shewana3_3022 3628834 - 3628451 - | holo-acyl-carrier-protein synthase Shewana3_3023 3629571 - 3628834 - | pyridoxal phosphate biosynthetic protein PdxJ TERM 4406 3629266 - 3629280 + g 73 -5.7 -4.57569 | overlap 3629255 TAACCCACCTTCGGT CGTCA CTTCT TGACG TTTTTCAGGGACTAA Shewana3_3024 3630362 - 3629661 - | DNA repair protein RecO TERM 4407 3630216 - 3630206 - G 76 -5.4 -4.81249 | CGCTAAATTCAAAAA TCAG CGG CTGA AAGGGTTGGAGAATA era 3631431 - 3630412 - | GTP-binding protein Era TERM 4408 3630969 - 3630987 + g 75 -8.8 -3.90291 | ACACGGTTTTACGTT CTTCACCG CCA CGGCGAAG TTTGCTTAACACCAT Shewana3_3026 3632108 - 3631428 - | RNAse III Shewana3_3027 3633027 - 3632110 - | signal peptidase I TERM 4409 3633176 - 3633158 - R 100 -16 -3.97057 | opp_overlap 3633148 3633145 3633144, overlap 3633168 GATAAGCTAAGTAAA GCGCCGCA AAC TGCGGCGC AATAATAGCTAAATT TERM 4410 3633201 - 3633213 + r 72 -7.7 -3.76952 | TAAATTGTGTTATCT CGAGT GTT ACTCG TTTAGCTTAAGTACC Shewana3_3028 3634997 - 3633207 - | GTP-binding protein LepA TERM 4411 3633346 - 3633368 + g 71 -7.1 -4.13767 | gap 1, overlap 3633335 CCACCGTAACACTTA GCCGTTACGT CTTT ACGTAA-GGC TTTTACGGTAGAACG TERM 4412 3634582 - 3634600 + g 76 -6 -4.64676 | GCTACGCGCTCAGGA TCGGCTTG GGG TAAGTCGA TTTTGTTCAGGATAG Shewana3_3029 3635638 - 3635165 - | positive regulator of sigma(E), RseC/MucC Shewana3_3030 3636582 - 3635650 - | sigma E regulatory protein, MucB/RseB TERM 4413 3636442 - 3636425 - G 76 -8.4 -4.21322 | TGAAGATAAACCAAA GGCCGA ATATGG TCGGCC TGAAGTTGTATAATC Shewana3_3031 3637218 - 3636595 - | anti sigma-E protein, RseA TERM 4414 3637251 - 3637268 + r 81 -4.1 -5.31456 | overlap 3637252 TTAAGGGTGTTACTC TTCCAGT AATG GCTGGAG TTTTTTATCGATTGC Shewana3_3032 3637823 - 3637245 - | RNA polymerase sigma factor RpoE Shewana3_3033 3638013 - 3639626 + | L-aspartate oxidase TERM 4415 3639653 - 3639680 + T 100 -17.2 -4.88918 | AAGGGACATTTTTGA CGGGCTAAATCT ACTC AGATTTAGCCCG TTTTATTTAGGCTGA Shewana3_3034 3640157 - 3639717 - | hypothetical protein TERM 4416 3640116 - 3640094 - G 100 -14.2 -5.4433 | opp_overlap 3640106 AGACACAAACAAAAA CGACCAACGA GAG TCGCTGGTCG CTAGAGGCTTTTACG Shewana3_3035 3640377 - 3640138 - | hypothetical protein nhaR 3641377 - 3640469 - | transcriptional activator NhaR TERM 4417 3641426 - 3641402 - R 100 -15.8 -2.52464 | opp_overlap 3641404 GCTTCCTCTAATGGA TACCGCAGCC TCAAG GGCTGCGGTA TGTCGGATCGCAGTG TERM 4418 3641404 - 3641424 + r 100 -14.7 -2.89564 | opp_overlap 3641402 TTCCTCTAATGGATA CCGCAGCCT CAA GGGCTGCGG TATGTCGGATCGCAG Shewana3_3037 3641859 - 3641473 - | hypothetical protein Shewana3_3038 3643031 - 3641862 - | Na+/H+ antiporter NhaA TERM 4419 3643101 - 3643138 + r 74 -9.3 -3.35867 | gap 1, opp_overlap 3643092 3643110 GTATAATCGATAGTT TCGACAAAACACCTCG ATAATTC CGAGGTG-TTAGTCGA TTAATTCGCCATTAA TERM 4420 3643130 - 3643110 - R 86 -9 -4.38154 | opp_overlap 3643101 ATAGTTTCGACAAAA CACCTCGA TAATT CCGAGGTG TTAGTCGATTAATTC thyA 3643944 - 3643150 - | thymidylate synthase TERM 4421 3643522 - 3643501 - G 82 -7.3 -4.69622 | gap 1, opp_overlap 3643501, overlap 3643505 ATAGAATTGGAAAAA GGCA-TGGCA AGG TGCCAGCGCC ATTTTATCCAGTTCA Shewana3_3040 3644750 - 3643944 - | prolipoprotein diacylglyceryl transferase TERM 4422 3643997 - 3643981 - G 74 -6.5 -4.41087 | AGAATTAAATATAAA CCGAAGA GGA TCATCGG CACAGAGAGGATCTG Shewana3_3041 3645596 - 3644796 - | hypothetical protein TERM 4423 3645111 - 3645093 - G 70 -4.5 -4.69464 | overlap 3645107 AAAATAGGTTAAAAA CGGCACT AACAA AACGCCG CCGCCGATCCCCATC Shewana3_3042 3647889 - 3645655 - | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 4424 3647527 - 3647538 + g 85 -7.2 -4.75372 | opp_overlap 3647526, overlap 3647526 CTGCACCACAATTAC GCCG ACGA CGGC TTTTTGATAAATAAT Shewana3_3043 3648437 - 3647913 - | dinucleoside polyphosphate hydrolase TERM 4425 3648093 - 3648078 - G 70 -9 -3.60971 | ACGCCAATCGTCAAA CTCAGG GTGG CCTGAG GAACTTAAATTAATC TERM 4426 3648577 - 3648609 + H 80 -10 -3.57462 | overlap 3648577 3648579 CAAGGGGTTCAAGCT TGGGGATATCCACA TTTTC TGTGGATATCTCTG TTTGAAACTCGGGTA TERM 4427 3648579 - 3648607 + H 95 -12.6 -3.36515 | overlap 3648577 3648577 AGGGGTTCAAGCTTG GGGATATCCACA TTTTC TGTGGATATCTC TGTTTGAAACTCGGG TERM 4428 3648767 - 3648748 - H 79 -6.6 -4.65895 | CCGGTGATTCAAAAA TTAAAAAG CTCA CTTTTTAA CCTAATGCAAATTAA Shewana3_3044 3649129 - 3649800 + | DNA mismatch repair protein Shewana3_3045 3649984 - 3650991 + | adenylate cyclase-related protein Shewana3_3046 3651930 - 3651019 - | LysR family transcriptional regulator Shewana3_3047 3652514 - 3652149 - | Hpt protein TERM 4429 3652595 - 3652616 + r 78 -5.9 -4.86731 | opp_overlap 3652597 3652612, overlap 3652598 CAGTGCAACTTATAG CAGCATTTG TGGT CAAATGATG TTTTATTTAACAAAA Shewana3_3048 3653629 - 3652700 - | putative radical SAM protein TERM 4430 3653503 - 3653492 - G 73 -5.8 -4.50976 | GGCCACATTACAAAA GGTG CAAC CACC ACGTCCTAGAGTGCC TERM 4431 3654296 - 3654278 - g 75 -8.8 -3.89346 | opp_overlap 3654275 3654278 GCTTGATTGCACAAA TGGATGGC GAA GCCAGCCA TCGTATCGTGCGCAC TERM 4432 3655396 - 3655384 - g 100 -10.5 -4.68424 | opp_overlap 3655392, overlap 3655386 GAAGTGATTGAAAAA GGCCG CGT CGGCC CGGGTGAGCTGTTAG gltB 3654217 - 3658665 + | glutamate synthase subunit alpha gltD 3658672 - 3660078 + | glutamate synthase subunit beta TERM 4433 3660154 - 3660173 + F 100 -9.2 -6.10295 | overlap 3660155 TTGCTTGTGAATTTT GGCGCACC TTAG GGTGCGCA TTTTTTTTATCTTCC TERM 4434 3660155 - 3660172 + F 100 -12.7 -4.23737 | overlap 3660154 TGCTTGTGAATTTTG GCGCACC TTAG GGTGCGC ATTTTTTTTATCTTC Shewana3_3052 3660326 - 3661036 + | methylthioadenosine nucleosidase TERM 4435 3661476 - 3661466 - g 73 -3.2 -5.0538 | overlap 3661475 TGCCAGCGCAAAAAA GCTA TTA CAGC CGTGGATTGTCCGTG TERM 4436 3661577 - 3661541 - g 79 -7.9 -4.57353 | opp_overlap 3661541, overlap 3661526 3661527 3661543 GGCCACGATAGAAAA GCTCGCTACCGCGCC GATTTAT GGCACGGCATCGACC ATCTTCTTCTTTGCG Shewana3_3053 3661068 - 3662057 + | cobalamin biosynthesis protein CbiB Shewana3_3054 3662113 - 3662490 + | hypothetical protein Shewana3_3055 3662487 - 3663113 + | hypothetical protein TERM 4437 3663349 - 3663378 + G 77 -12.1 -3.03038 | overlap 3663345 3663371 TTTATTATCGATTTC CTCGAGCGCGCCC ACGA GGGTGTGCTCGAA TATGATTTCAATATC Shewana3_3056 3663115 - 3663606 + | hypothetical protein TERM 4438 3663923 - 3663939 + G 70 -9.5 -3.30124 | CAGCAGCCAATATGC GGGTAAA AAG TTTACCC TTGTCCGCACTCAGC Shewana3_3057 3663729 - 3664157 + | hypothetical protein TERM 4439 3664243 - 3664211 - T 100 -14.4 -3.54903 | gap 1, opp_overlap 3664211 3664218 3664240 3664241, overlap 3664218 AGATAAAAGGCAGAA GT-AAAAAGAGCGCC CTTA GGCGCTCTTTTTTAC TTGCTTGGTAAGTAC TERM 4440 3664211 - 3664243 + T 100 -14.4 -3.40867 | gap 1, opp_overlap 3664211 3664218, overlap 3664218 3664240 3664241 AGATAAAAGGCAGAA GT-AAAAAGAGCGCC CTTA GGCGCTCTTTTTTAC TTGCTTGGTAAGTAC TERM 4441 3664218 - 3664235 + T 100 -12.7 -5.32565 | opp_overlap 3664218 3664211, overlap 3664211 AGGCAGAAGTAAAAA GAGCGCC CTTA GGCGCTC TTTTTTACTTGCTTG TERM 4442 3664235 - 3664218 - T 100 -12.7 -4.93968 | opp_overlap 3664211 3664218, overlap 3664211 AGGCAGAAGTAAAAA GAGCGCC CTTA GGCGCTC TTTTTTACTTGCTTG Shewana3_3058 3665512 - 3664316 - | tyrosyl-tRNA synthetase Shewana3_3059 3665640 - 3667040 + | peptidase M23B TERM 4443 3667747 - 3667727 - g 70 -9.7 -3.27786 | GGCAAAACCGACCAA CAGCTACTG GCG CAGTTGCTG TCGCACCCATATTTT TERM 4444 3667916 - 3667933 + G 71 -6.9 -4.15029 | opp_overlap 3667916 CGCGATATCCTTAAA CTCGCCC CTGT GGGAGAG TTATTTGTCTGCGGT anmK 3667061 - 3668170 + | anhydro-N-acetylmuramic acid kinase Shewana3_3061 3670330 - 3668180 - | transcriptional regulator domain-containing protein TERM 4445 3670486 - 3670476 - H 71 -4 -4.88407 | TTAGCTAATTAAAAA TCTA AAA TAGA GATTTAAACAATATA Shewana3_3062 3670640 - 3673048 + | glutamyl peptidase TERM 4446 3673488 - 3673465 - T 100 -11 -5.45652 | ATTGGCAATAAAAAA CCGCATGCAG GGAG CCACATGCGG TTGAACAAACTTAAG Shewana3_3063 3676550 - 3673527 - | phosphatidylglycerophosphatase TERM 4447 3674330 - 3674316 - G 78 -10 -3.8377 | AACCGCCAGATTAAA GCCTTC GAG GAAGGC TGGCGCCATAGTAAA TERM 4448 3674372 - 3674382 + g 74 -6.8 -4.4078 | AGGTATCCGCAGTTT CCTC GGT GAGG TTTTCGTTACCAGCG TERM 4449 3675934 - 3675946 + g 70 -9.1 -3.53012 | GTGGTTTCACGACCA CCACC TTC GGTGG TTTCACCGCCACGGG TERM 4450 3677297 - 3677326 + G 77 -10.7 -3.55622 | gap 1 TGGCTCGTTCTCGGC GGCTG-CGGCAGCG CAG TGCTGGCGGCAGCC TTTCCGGAAGTTGGG TERM 4451 3677868 - 3677888 + G 70 -9.7 -3.30771 | TGTGGATATTCTGGG TCGCTCCTA TCG TAGGTGCGA TTCTCGCCGGTATGA Shewana3_3064 3677237 - 3677932 + | aquaporin Z TERM 4452 3677939 - 3677971 + F 73 -5.7 -4.56597 | gap 2, opp_overlap 3677947, overlap 3677944 3677947 3677950 GCTGAGTAATTCCCC GCTAGCAACAGCGCC TTCGC GGCGTTGTTG-T-GC TTTTTCAAACCCCGC TERM 4453 3677944 - 3677968 + F 86 -12.2 -3.23708 | opp_overlap 3677947, overlap 3677939 3677947 3677950 GTAATTCCCCGCTAG CAACAGCGCC TTCGC GGCGTTGTTG TGCTTTTTCAAACCC TERM 4454 3677947 - 3677965 + F 72 -8.1 -3.75505 | opp_overlap 3677947, overlap 3677944 3677939 3677950 ATTCCCCGCTAGCAA CAGCGCC TTCGC GGCGTTG TTGTGCTTTTTCAAA Shewana3_3065 3678088 - 3678468 + | hypothetical protein Shewana3_3066 3678488 - 3678943 + | hypothetical protein TERM 4455 3678951 - 3678970 + T 70 -7.8 -3.58343 | opp_overlap 3678951 TGAATTAACTCCAAA GCAACGCG CTTA CGCCTTGC TTTGCCAATCCTAGC TERM 4456 3678970 - 3678951 - T 70 -7.8 -3.69434 | opp_overlap 3678951 TGAATTAACTCCAAA GCAACGCG CTTA CGCCTTGC TTTGCCAATCCTAGC TERM 4457 3679004 - 3679034 + T 86 -11.3 -3.38314 | opp_overlap 3679011, overlap 3679011 ACAGGAAAGACCAAC AAAAAAAGCCGTC ATCTC GACGGCTTTTTTA TCTTCTATATCAGTT TERM 4458 3679011 - 3679027 + T 100 -9.4 -5.53436 | opp_overlap 3679011, overlap 3679004 AGACCAACAAAAAAA GCCGTC ATCTC GACGGC TTTTTTATCTTCTAT TERM 4459 3679027 - 3679011 - T 100 -10.1 -5.85737 | opp_overlap 3679011 3679004 AGACCAACAAAAAAA GCCGTCA TCT CGACGGC TTTTTTATCTTCTAT Shewana3_3067 3679421 - 3679071 - | iron-sulfur cluster insertion protein ErpA Shewana3_3068 3680220 - 3679414 - | hypothetical protein TERM 4460 3680674 - 3680687 + G 70 -2.3 -5.0133 | opp_overlap 3680646, overlap 3680675 AAATTCCACTGCAAT CTGCC GCAG GGCAA TTTTTTCAGGCGCTG TERM 4461 3681686 - 3681675 - g 100 -7.2 -5.36441 | GCGCTACAGAAAAAA GGCG TGCG CGCC CTGATGGATAAACGT Shewana3_3069 3680295 - 3682019 + | Cl- channel, voltage-gated family protein Shewana3_3070 3682211 - 3683230 + | aspartate carbamoyltransferase Shewana3_3071 3683258 - 3684550 + | glutamate-1-semialdehyde 2,1-aminomutase TERM 4462 3684594 - 3684565 - T 73 -7.1 -4.1721 | opp_overlap 3684571, overlap 3684567 3684571 AGCGATAGCTTAAAA CACTAAGGGACGC ATTT GCGTCCCTTTTTA TTGCTTGGCGTTTGA TERM 4463 3684571 - 3684588 + T 100 -12.7 -5.1963 | opp_overlap 3684567 3684565 3684571 AGCTTAAAACACTAA GGGACGC ATTT GCGTCCC TTTTTATTGCTTGGC TERM 4464 3684588 - 3684571 - T 100 -12.7 -3.54181 | opp_overlap 3684571, overlap 3684567 3684565 AGCTTAAAACACTAA GGGACGC ATTT GCGTCCC TTTTTATTGCTTGGC Shewana3_3072 3684834 - 3684637 - | hypothetical protein TERM 4465 3684922 - 3684932 + H 75 -5.4 -4.82901 | overlap 3684912 ATCCAGTCAATATTT TGAC TTG GTCA TTTTTGTGACACAGC TERM 4466 3685564 - 3685580 + G 74 -4.3 -4.8048 | opp_overlap 3685564 3685565, overlap 3685566 AAAACTTGCTCGAAA TTGCCAC CCT GTGGCTG TTTTTGATGTCGACA TERM 4467 3685566 - 3685578 + G 77 -9.1 -4.02302 | opp_overlap 3685565 3685564, overlap 3685564 AACTTGCTCGAAATT GCCAC CCT GTGGC TGTTTTTGATGTCGA Shewana3_3073 3685305 - 3686615 + | citrate transporter TERM 4468 3686633 - 3686662 + T 100 -15.9 -4.0162 | opp_overlap 3686633 3686640, overlap 3686640 TTTGATTTTAAGCGA TAAAAAAGGCGCC CATC GGCGCCTTTTTTG TTTGTAATATAACAA TERM 4469 3686662 - 3686633 - T 91 -13.7 -2.53876 | opp_overlap 3686633 3686640, overlap 3686640 TTTGATTTTAAGCGA TAAAAAAGGCGCC CATC GGCGCCTTTTTTG TTTGTAATATAACAA TERM 4470 3686640 - 3686655 + T 100 -11.8 -5.73978 | opp_overlap 3686633 3686640, overlap 3686633 TTAAGCGATAAAAAA GGCGCC CATC GGCGCC TTTTTTGTTTGTAAT TERM 4471 3686655 - 3686640 - T 100 -11.8 -5.31456 | opp_overlap 3686640 3686633, overlap 3686633 TTAAGCGATAAAAAA GGCGCC CATC GGCGCC TTTTTTGTTTGTAAT Shewana3_3074 3687779 - 3686679 - | general secretion pathway protein B Shewana3_3075 3689467 - 3687779 - | peptidoglycan binding domain-containing protein TERM 4472 3689507 - 3689493 - H 71 -5 -4.74504 | ATCCTAAGCTAAAAA TAACGC CCC ACGTTA AAACGTCCCAGAGAT Shewana3_3076 3689642 - 3690892 + | metal dependent phosphohydrolase Shewana3_3077 3691127 - 3691393 + | major outer membrane lipoprotein, putative Shewana3_3078 3692856 - 3692017 - | ribosomal RNA large subunit methyltransferase A, putative TERM 4473 3692610 - 3692630 + g 86 -6.7 -5.0538 | overlap 3692611 CATCCGCTTTGAGAT GGGGGGCGA TCA TCGCCGCCA TTTTTTCAACTAAAG TERM 4474 3692611 - 3692629 + g 77 -10.2 -3.62746 | overlap 3692610 ATCCGCTTTGAGATG GGGGGCGA TCA TCGCCGCC ATTTTTTCAACTAAA TERM 4475 3692691 - 3692713 + g 76 -6.9 -4.49311 | overlap 3692705 GCTTTGCCCGCACTT GCTGACGGG AGTCG CCAGTCGGC TTTTGTCGTGCTGGT TERM 4476 3692922 - 3692894 - R 78 -9 -3.90048 | opp_overlap 3692900, overlap 3692900 CCGCGCCTAAAAACA CAAAAATCGGGT ACTAG ACCCGATTTTTT AGCCATGACGCCCCT TERM 4477 3692916 - 3692900 - R 100 -8 -5.36364 | opp_overlap 3692900, overlap 3692894 CTAAAAACACAAAAA TCGGGT ACTAG ACCCGA TTTTTTAGCCATGAC TERM 4478 3692900 - 3692916 + r 95 -8 -5.03314 | opp_overlap 3692900 3692894 CTAAAAACACAAAAA TCGGGT ACTAG ACCCGA TTTTTTAGCCATGAC Shewana3_3079 3693741 - 3692941 - | undecaprenyl pyrophosphate phosphatase Shewana3_3080 3694269 - 3693760 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Shewana3_3081 3694669 - 3694319 - | dihydroneopterin aldolase TERM 4479 3694532 - 3694552 + g 79 -8.2 -4.30719 | GAGCGCGTATTGATA GTCGTCGC TTGCC GCGGCGGC TTTATTGTCCCAAGC TERM 4480 3695303 - 3695319 + G 70 -8 -3.7744 | overlap 3695290 3695294 3695292 ATTGGCGATGACTTG GCCATC TGCTT GATGGC TTCTTGGGTTGTCTT TERM 4481 3695494 - 3695476 - g 70 -2.5 -4.99043 | gap 1, overlap 3695478 CCGTCATAAAGAAAA TATTCAGC GGTT GCTGAA-A GGTGAAGAGTCTAAG TERM 4482 3695493 - 3695478 - g 71 -7.6 -4.11748 | overlap 3695476 GTCATAAAGAAAATA TTCAGC GGTT GCTGAA AGGTGAAGAGTCTAA Shewana3_3082 3694931 - 3695542 + | putative glycerol-3-phosphate acyltransferase PlsY TERM 4483 3695708 - 3695669 - T 91 -13.2 -2.82931 | gap 1, opp_overlap 3695680, overlap 3695680 ACAATCCAAGATAAC CATAA-AAAAAACAGCGCA TTA TGCGCTGTTTTTTATTTTG CTGACTTAGCTTGCG TERM 4484 3695680 - 3695696 + T 100 -12.3 -5.83211 | opp_overlap 3695669 3695680 TAACCATAAAAAAAA CAGCGCA TTA TGCGCTG TTTTTTATTTTGCTG TERM 4485 3695696 - 3695680 - T 100 -12.3 -6.02345 | opp_overlap 3695680, overlap 3695669 TAACCATAAAAAAAA CAGCGCA TTA TGCGCTG TTTTTTATTTTGCTG Shewana3_3083 3696745 - 3695729 - | O-sialoglycoprotein endopeptidase TERM 4486 3696314 - 3696298 - G 75 -8.7 -3.92602 | opp_overlap 3696298 CTAAGACTTCATAAA GGCCGAT ACC ATCGACC TTTACTAACATGGAG rpsU 3696960 - 3697175 + | 30S ribosomal protein S21 TERM 4487 3697165 - 3697151 - f 74 -7.8 -4.07568 | opp_overlap 3697151 GCTTTCTCGCGAAAA CGCACG TCG CGTACG TTTATACTAATCTCT Shewana3_3085 3697182 - 3697625 + | GatB/Yqey domain-containing protein TERM 4488 3697669 - 3697646 - f 93 -12.4 -3.21912 | opp_overlap 3697646, overlap 3697649 GTTTCAATGTATGAA CAAGCCGTGC CTAT GCGCGGCTTG TTTGTTTAAATTCGC TERM 4489 3697646 - 3697669 + F 100 -14.6 -4.50159 | opp_overlap 3697646 3697649 GTTTCAATGTATGAA CAAGCCGTGC CTAT GCGCGGCTTG TTTGTTTAAATTCGC TERM 4490 3697666 - 3697649 - f 75 -8.3 -3.75105 | opp_overlap 3697646, overlap 3697646 TCAATGTATGAACAA GCCGTGC CTAT GCGCGGC TTGTTTGTTTAAATT Shewana3_3086 3697709 - 3699433 + | DNA primase Shewana3_3087 3699560 - 3701419 + | RNA polymerase, sigma 70 subunit, RpoD TERM 4491 3701442 - 3701458 + T 100 -15.1 -5.06816 | opp_overlap 3701432 AAGCATCGATTCTAA GCCCCGC CTA GCGGGGC TTTTTATTGCCCAAT TERM 4492 3701795 - 3701830 + T 100 -15 -2.99545 | opp_overlap 3701804, overlap 3701804 CCACCACCCCAATTC AACAAAAAAGCCCATT TCTT AATGGGCTTTTTTGTG TCTGTCATCTGTCGA TERM 4493 3701821 - 3701804 - T 100 -9.9 -5.5074 | opp_overlap 3701795 3701804 CAATTCAACAAAAAA GCCCATT TCTT AATGGGC TTTTTTGTGTCTGTC TERM 4494 3701804 - 3701821 + T 100 -9.9 -5.4492 | opp_overlap 3701804, overlap 3701795 CAATTCAACAAAAAA GCCCATT TCTT AATGGGC TTTTTTGTGTCTGTC TERM 4495 3701974 - 3701939 - T 100 -12.8 -4.94672 | gap 1, opp_overlap 3701939 3701935 3701943, overlap 3701943 AAATAAGACCAAAAA CAAAGGCGCTTAA-TGA AAT TCACTTAAGCGCCTTGG TGACTTTCCCTTGTG TERM 4496 3701939 - 3701974 + T 91 -12.8 -2.68785 | gap 1, opp_overlap 3701939 3701943, overlap 3701935 3701943 AAATAAGACCAAAAA CAAAGGCGCTTAA-TGA AAT TCACTTAAGCGCCTTGG TGACTTTCCCTTGTG TERM 4497 3701943 - 3701970 + T 89 -12.2 -3.25356 | gap 1, opp_overlap 3701939 3701943, overlap 3701939 3701935 AAGACCAAAAACAAA GGCGCTTAA-TGA AAT TCACTTAAGCGCC TTGGTGACTTTCCCT TERM 4498 3701970 - 3701943 - T 100 -12.2 -4.95618 | gap 1, opp_overlap 3701943 3701939 3701935, overlap 3701939 AAGACCAAAAACAAA GGCGCTTAA-TGA AAT TCACTTAAGCGCC TTGGTGACTTTCCCT Shewana3_3088 3704133 - 3702013 - | methyl-accepting chemotaxis sensory transducer Shewana3_3089 3704553 - 3706103 + | amino acid/peptide transporter TERM 4499 3706142 - 3706167 + F 100 -14.1 -5.68039 | gap 1, opp_overlap 3706142 TGTGAGCGCTAAAAA CTGCCGACAAGC CCC GCTTG-CGGCAG TTTTTTTATACCTTT TERM 4500 3706167 - 3706142 - f 100 -14.1 -4.59773 | gap 1, opp_overlap 3706142 TGTGAGCGCTAAAAA CTGCCGACAAGC CCC GCTTG-CGGCAG TTTTTTTATACCTTT Shewana3_3090 3706474 - 3707523 + | luciferase family protein TERM 4501 3707575 - 3707533 - T 89 -12.3 -2.76261 | gap 1, opp_overlap 3707536 3707538 3707540 3707547, overlap 3707535 3707547 TCTTAAGCGTTAAAC CACGCCATAAAAAATCCCGC CTAA GCGGGATTTTTTATATC-TG TTAACCTTTTAACAC TERM 4502 3707574 - 3707535 - T 83 -11.6 -2.92667 | opp_overlap 3707536 3707538 3707540 3707547, overlap 3707533 3707547 TTAAGCGTTAAACCA CGCCATAAAAAATCCCGC CTAA GCGGGATTTTTTATATCT GTTAACCTTTTAACA TERM 4503 3707536 - 3707573 + T 95 -12.9 -3.15366 | opp_overlap 3707535 3707533 3707547, overlap 3707538 3707540 3707547 TAAGCGTTAAACCAC GCCATAAAAAATCCCGC CTAA GCGGGATTTTTTATATC TGTTAACCTTTTAAC TERM 4504 3707538 - 3707571 + T 100 -14.1 -3.13141 | opp_overlap 3707535 3707533 3707547, overlap 3707536 3707540 3707547 AGCGTTAAACCACGC CATAAAAAATCCCGC CTAA GCGGGATTTTTTATA TCTGTTAACCTTTTA TERM 4505 3707540 - 3707569 + T 100 -16.7 -3.11361 | opp_overlap 3707535 3707533 3707547, overlap 3707538 3707536 3707547 CGTTAAACCACGCCA TAAAAAATCCCGC CTAA GCGGGATTTTTTA TATCTGTTAACCTTT TERM 4506 3707562 - 3707547 - T 100 -10.4 -5.26316 | opp_overlap 3707540 3707538 3707536 3707547, overlap 3707535 3707533 CCACGCCATAAAAAA TCCCGC CTAA GCGGGA TTTTTTATATCTGTT TERM 4507 3707547 - 3707562 + T 100 -10.4 -5.46276 | opp_overlap 3707547 3707535 3707533, overlap 3707540 3707538 3707536 CCACGCCATAAAAAA TCCCGC CTAA GCGGGA TTTTTTATATCTGTT Shewana3_3091 3708853 - 3707576 - | 4-aminobutyrate aminotransferase Shewana3_3092 3710404 - 3708956 - | succinate semialdehyde dehydrogenase Shewana3_3093 3711747 - 3710461 - | FAD dependent oxidoreductase TERM 4508 3711330 - 3711346 + g 73 -5.9 -4.45544 | ATTGCTTTTGATGGC GTAAATG GCC CATTTGC TTTTCGTTCATCGCC TERM 4509 3711968 - 3711943 - R 71 -6.9 -4.09117 | opp_overlap 3711943 TGGAGGGAGAAAGAA GGATGACCT TGGCAATC AGGCCATCC TTTTGTCGCTAAGCA Shewana3_3094 3712842 - 3712027 - | binding-protein-dependent transport systems inner membrane component Shewana3_3095 3713744 - 3712839 - | binding-protein-dependent transport systems inner membrane component TERM 4510 3713414 - 3713384 - G 71 -10.4 -3.18023 | opp_overlap 3713394, overlap 3713382 GTAGCATCACCAATA GCAGCAGCACGGTT TGC AACCTTGCTGGCGC ACGGGCAATGGCATA Shewana3_3096 3714877 - 3713741 - | spermidine/putrescine ABC transporter ATPase subunit TERM 4511 3715006 - 3715032 + r 76 -10.8 -2.6563 | opp_overlap 3715009, overlap 3715003 3715003 ATGTCTGCGTTATTA AAAGGGGCAAGC AAT GCTTGCCCCATC TCGATTATTGGCCAG TERM 4512 3715029 - 3715009 - R 100 -16.9 -4.25104 | opp_overlap 3715006 3715003 3715003 TCTGCGTTATTAAAA GGGGCAAGC AAT GCTTGCCCC ATCTCGATTATTGGC Shewana3_3097 3716200 - 3715037 - | extracellular solute-binding protein TERM 4513 3716764 - 3716746 - R 71 -3.1 -5.06816 | overlap 3716748 3716755 AGTTTTGAACAAAAA CAGTGCA AATTA CACACTG AGTAACAGGAACTCC Shewana3_3098 3718110 - 3716755 - | L-glutamine synthetase TERM 4514 3717282 - 3717301 + g 82 -7.2 -4.64657 | ATGGGCTTTGAGTTC CGTCTTCA TTAG TGAAGATG TTTTTGCCCGTTTCC TERM 4515 3717719 - 3717729 + g 82 -6.8 -4.79223 | opp_overlap 3717717, overlap 3717717 3717716 TCAGGTGCAATGACT GGCT CCC AGCC TTTTTGCTCGTATAG Shewana3_3099 3718873 - 3718112 - | peptidase C26 TERM 4516 3718823 - 3718811 - G 71 -7.7 -4.01737 | opp_overlap 3718810 ACCAACAATATTAAA GGGAT GTG ATCCC AATTGTTGATTACAC Shewana3_3100 3719903 - 3719277 - | XRE family transcriptional regulator Shewana3_3101 3720060 - 3721367 + | FAD dependent oxidoreductase Shewana3_3102 3721924 - 3721412 - | hypothetical protein Shewana3_3103 3722867 - 3722010 - | rhodanese domain-containing protein TERM 4517 3722327 - 3722310 - G 86 -8.3 -4.66609 | opp_overlap 3722314 CACTTGACCTAAAAA GCGCGCG GCGC CGCGGGC ATCGATAATCGCGCT Shewana3_3104 3723408 - 3723013 - | rare lipoprotein A TERM 4518 3723534 - 3723522 - R 80 -6.3 -4.82863 | overlap 3723526 TAACCAGAAAATAAA GAAAG CCC CTTTC GCATCGGCGTAAAGA TERM 4519 3723552 - 3723526 - R 100 -9.5 -4.91046 | gap 1, overlap 3723522 CAGAAAATAAAGAAA GCCCCTTT-CGC ATCG GCGTAAAGAGGC TTGAGAGGGAGTAAA Shewana3_3105 3725070 - 3723574 - | aldehyde dehydrogenase (acceptor) TERM 4520 3724194 - 3724214 + g 79 -13.9 -2.75844 | opp_overlap 3724184 3724189 3724188, overlap 3724196 TAAAAGCAATGGCTT CGGCGGCCG CCA CCGCCGCCG CTTTAAGATCGGGCG TERM 4521 3724196 - 3724215 + g 77 -10.6 -3.59979 | opp_overlap 3724184 3724189 3724188, overlap 3724194 AAAGCAATGGCTTCG GCGGCCGC CACC GCCGCCGC TTTAAGATCGGGCGC TERM 4522 3724315 - 3724325 + g 76 -3.2 -5.06414 | CGCATAAATCATTAA TTGC TTA GCGA TTTTTGTTGAGCCAG Shewana3_3106 3725351 - 3726691 + | beta alanine--pyruvate transaminase Shewana3_3107 3726742 - 3728232 + | methylmalonate-semialdehyde dehydrogenase [acylating] TERM 4523 3728521 - 3728531 + G 76 -6.8 -4.48713 | overlap 3728518 CACAAACCTTCACTG TCGG CGA CCGA TTTATTATTCCTGCG Shewana3_3108 3728256 - 3728615 + | protein of unknown function DUF861, cupin_3 Shewana3_3109 3728801 - 3729523 + | hypothetical protein TERM 4524 3729569 - 3729542 - T 80 -11.4 -2.60615 | opp_overlap 3729548, overlap 3729548 ACGCCCTGCAAATAC TAAAAAGCCCTC TGAT GAGGGCTTTTTT ACATCGCTTGGTAAC TERM 4525 3729548 - 3729563 + T 100 -10.4 -5.10497 | opp_overlap 3729542 3729548 TGCAAATACTAAAAA GCCCTC TGAT GAGGGC TTTTTTACATCGCTT TERM 4526 3729563 - 3729548 - T 100 -10.4 -4.93696 | opp_overlap 3729548, overlap 3729542 TGCAAATACTAAAAA GCCCTC TGAT GAGGGC TTTTTTACATCGCTT Shewana3_3110 3730886 - 3729588 - | glucose/galactose transporter TERM 4527 3731060 - 3731049 - R 78 -4.4 -5.23765 | opp_overlap 3731049 CAAACAACACAAAAA GACA ACGC TGTC ATTTGCGATTTAGCC TERM 4528 3731180 - 3731201 + r 80 -10.2 -3.53811 | opp_overlap 3731180 GCTAGAAATAAAAAA GCCACAGA GGTGAG TCTGTGGC TTTAAGAAAAATCAG TERM 4529 3731201 - 3731180 - R 100 -10.2 -5.72622 | opp_overlap 3731180 GCTAGAAATAAAAAA GCCACAGA GGTGAG TCTGTGGC TTTAAGAAAAATCAG Shewana3_3111 3732413 - 3731226 - | hypothetical protein TERM 4530 3731452 - 3731439 - G 70 -2.3 -4.98911 | opp_overlap 3731439 CACCACAAAAATAAA GGCGA GCTT TTGCC ATTTCAGCACATCCA TERM 4531 3731527 - 3731543 + g 76 -8 -4.15222 | opp_overlap 3731527 GTGACCAACACAAAA GAGCTG GTCCA CAGCTC TTTATTGACGGGAAT TERM 4532 3731543 - 3731527 - G 86 -8 -4.70583 | opp_overlap 3731527 GTGACCAACACAAAA GAGCTG GTCCA CAGCTC TTTATTGACGGGAAT TERM 4533 3732524 - 3732489 - R 100 -12.7 -5.88565 | TGTACAATAAAAAAA CTTAGCCCCTGTCAT CAAAAT ACGACAAGGGCCAAG GTTAACGCTTTACTG Shewana3_3112 3733688 - 3732552 - | N-acetylglucosamine 6-phosphate deacetylase TERM 4534 3733559 - 3733540 - G 86 -9.2 -4.45083 | TGTACATCGATAAAA CCTGGCAC TAGG GTGCCTGG GTAGCGAATTTCCTT Shewana3_3113 3734730 - 3733732 - | sugar isomerase (SIS) TERM 4535 3734408 - 3734383 - G 76 -6.8 -4.55118 | gap 1, overlap 3734371 TAACGCCACACAAAA CGCGC-CGGCG TTTTT CGCCATACGCG CCTGGGCTAAAATAT Shewana3_3114 3735697 - 3734789 - | ATPase, BadF/BadG/BcrA/BcrD type TERM 4536 3735809 - 3735796 - R 75 -5.3 -4.80882 | opp_overlap 3735796 ATGTTACAGCAAAAA TGACA GCGT TGTCA TTTACTTTTTGAAGC TERM 4537 3735905 - 3735878 - R 100 -11.5 -5.63236 | AGTGAAAAAGAAAAA GGCTGTATTTT TATTTT AAAATACAGCC AGATATAACTATTTG Shewana3_3115 3738729 - 3735922 - | beta-N-acetylhexosaminidase Shewana3_3116 3740245 - 3738758 - | methyl-accepting chemotaxis sensory transducer TERM 4538 3739689 - 3739707 + g 71 -6 -4.30719 | opp_overlap 3739689 AATCTGTGGCTAAGA TCGCCA TCACCAT TGGCGA TTTCTTCTAACGCAG Shewana3_3117 3741234 - 3740245 - | hypothetical protein TERM 4539 3741368 - 3741339 - H 100 -18.7 -5.47218 | opp_overlap 3741335 3741362, overlap 3741361 CTCTACCTAAAAAAA TGGCTGGGCACTG CTTA CAGTACCCAGCCA ACGCTAGTTTCTGGG Shewana3_3118 3741723 - 3742625 + | hypothetical protein Shewana3_3119 3743322 - 3742663 - | hypothetical protein Shewana3_3120 3744866 - 3743334 - | tryptophan halogenase TERM 4540 3744891 - 3744908 + r 100 -11.3 -4.19238 | opp_overlap 3744891 CTCATCTATAAAAAA GCCCAGT CGAG ACTGGGC TTTTAGACTTAACAA TERM 4541 3744908 - 3744891 - R 100 -11.3 -5.28176 | opp_overlap 3744891 CTCATCTATAAAAAA GCCCAGT CGAG ACTGGGC TTTTAGACTTAACAA Shewana3_3121 3747591 - 3744928 - | TonB-dependent receptor Shewana3_3122 3748018 - 3749034 + | LacI family transcription regulator TERM 4542 3749052 - 3749094 + T 100 -14.5 -3.2048 | gap 1, opp_overlap 3749036 3749058 3749061, overlap 3749058 3749063 TTTAGCTCAGCAAGG CT-AAAACAACACAGAGAGC CAAG GCTCTCTGTTTTGTTTTCAG TTAATGCAATTTCAG TERM 4543 3749087 - 3749058 - T 100 -13.7 -4.20696 | opp_overlap 3749052 3749058 3749063, overlap 3749061 TCAGCAAGGCTAAAA CAACACAGAGAGC CAAG GCTCTCTGTTTTG TTTTCAGTTAATGCA TERM 4544 3749058 - 3749087 + T 100 -13.7 -4.30014 | opp_overlap 3749058 3749061, overlap 3749052 3749063 TCAGCAAGGCTAAAA CAACACAGAGAGC CAAG GCTCTCTGTTTTG TTTTCAGTTAATGCA TERM 4545 3749084 - 3749061 - T 85 -9.6 -4.21933 | opp_overlap 3749058 3749052 3749063, overlap 3749058 GCAAGGCTAAAACAA CACAGAGAGC CAAG GCTCTCTGTT TTGTTTTCAGTTAAT TERM 4546 3749063 - 3749082 + T 100 -12.2 -5.13343 | opp_overlap 3749061 3749058, overlap 3749058 3749052 AAGGCTAAAACAACA CAGAGAGC CAAG GCTCTCTG TTTTGTTTTCAGTTA Shewana3_3123 3750384 - 3749095 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 4547 3750558 - 3750545 - R 100 -9.5 -5.5604 | opp_overlap 3750543 3750541 3750545 TTAAGCAACAAAAAA GGGCC TAAT GGCCC TCTCTTTAAACGGAT TERM 4548 3750545 - 3750558 + r 74 -9.5 -3.24411 | opp_overlap 3750545, overlap 3750543 3750541 TTAAGCAACAAAAAA GGGCC TAAT GGCCC TCTCTTTAAACGGAT Shewana3_3124 3750915 - 3750577 - | nitrogen regulatory protein P-II Shewana3_3125 3751153 - 3751665 + | methylation site containing protein Shewana3_3126 3751819 - 3752301 + | methylation site containing protein Shewana3_3127 3752629 - 3752330 - | hypothetical protein Shewana3_3128 3753024 - 3752626 - | methylation site containing protein TERM 4549 3752808 - 3752792 - G 73 -5.1 -4.63218 | opp_overlap 3752802 TGCTCTGTAACAAAA GGACTAG CGG CTAACCC CAGCTTAGTCATATC Shewana3_3129 3756539 - 3753033 - | type IV pilin biogenesis protein, putative Shewana3_3130 3757004 - 3756543 - | type IV pilus assembly protein PilX Shewana3_3131 3758012 - 3757020 - | prepilin-type cleavage/methylation-like protein Shewana3_3132 3758573 - 3758013 - | type IV pilus modification protein PilV TERM 4550 3758739 - 3758765 + r 95 -12.4 -3.29038 | opp_overlap 3758745, overlap 3758745 GTGAATTTTGATAAT AAAAAAGAGGCC ATT GGCCTCTTTTTA TTCATCATATTGATT TERM 4551 3758745 - 3758759 + r 100 -11.4 -5.15167 | opp_overlap 3758745, overlap 3758739 TTTGATAATAAAAAA GAGGCC ATT GGCCTC TTTTTATTCATCATA TERM 4552 3758759 - 3758745 - R 100 -11.4 -5.55769 | opp_overlap 3758745 3758739 TTTGATAATAAAAAA GAGGCC ATT GGCCTC TTTTTATTCATCATA Shewana3_3133 3759745 - 3758789 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Shewana3_3134 3760169 - 3759747 - | peptidylprolyl isomerase, FKBP-type Shewana3_3135 3760681 - 3760169 - | signal peptidase II TERM 4553 3760266 - 3760252 - G 76 -5.6 -4.82901 | opp_overlap 3760252 CGGCGCCGATAAAAA TCGCGG AAT CGGCGA TATTAAAGGCGGGAT TERM 4554 3760565 - 3760551 - G 89 -2.1 -5.72207 | GTGAAATTAAAAAAA GGTAA TAACT TCACC GATTCGAACAAATCA Shewana3_3136 3763513 - 3760691 - | isoleucyl-tRNA synthetase Shewana3_3137 3764481 - 3763546 - | riboflavin kinase / FMN adenylyltransferase TERM 4555 3763930 - 3763950 + g 79 -13.3 -2.73676 | overlap 3763928 3763928 GGTAAAAGGATGACC GAGTAGGCG TCT CGCCTGCTC TAGGTTTCCTTTAGC Shewana3_3138 3766106 - 3764547 - | integral membrane protein MviN TERM 4556 3765567 - 3765552 - G 74 -4 -5.00616 | overlap 3765554 CGTCGGCGCAAAAAA CATTGC CGCC GCAATA ATAGCCACGTTTAAG Shewana3_3139 3766275 - 3766171 - | hypothetical protein TERM 4557 3766423 - 3766406 - g 74 -7.7 -4.19238 | overlap 3766386 GCTTCAATCTGAAAA GCGTCGT CAGC ACAACGC CAGCCGTCGCTCAAT TERM 4558 3766490 - 3766461 - g 78 -3.6 -5.08169 | gap 1 ACATACGTTAAAAAA GTAATCG-CTGCT ATCAA AGCTGGCGATCAC AAAACAGCAACTGAA TERM 4559 3766518 - 3766495 - g 76 -6.8 -4.46212 | gap 1 CTGGCGATCACAAAA CAGCAACTGAA GCT TTC-GCTGCTG CACAACCAATCGTTG rpsT 3766359 - 3766625 + | 30S ribosomal protein S20 TERM 4560 3766671 - 3766639 - T 83 -11.6 -3.05715 | gap 1, opp_overlap 3766640 3766648, overlap 3766648 AATTTTCTTAGTGAA TA-AAAAAAACCGGC AATT GCCGGTTTTTTTATA TCTGATGATTACCAT TERM 4561 3766640 - 3766669 + T 93 -12.3 -2.98015 | opp_overlap 3766639 3766648, overlap 3766648 ATTTTCTTAGTGAAT AAAAAAAACCGGC AATT GCCGGTTTTTTTA TATCTGATGATTACC TERM 4562 3766661 - 3766648 - T 100 -9.5 -6.11243 | opp_overlap 3766648 3766640, overlap 3766639 AGTGAATAAAAAAAA CCGGC AATT GCCGG TTTTTTTATATCTGA TERM 4563 3766648 - 3766661 + T 100 -9.5 -5.76633 | opp_overlap 3766639 3766648, overlap 3766640 AGTGAATAAAAAAAA CCGGC AATT GCCGG TTTTTTTATATCTGA Shewana3_3141 3766982 - 3766686 - | ArsR family transcriptional regulator TERM 4564 3767582 - 3767571 - g 71 -5.8 -4.28254 | opp_overlap 3767571 CCTGAAGATGTAAAA GGCA AGAT TGCC TTTATCGATCAAAAA Shewana3_3142 3767118 - 3768524 + | peptidase M28 TERM 4565 3768580 - 3768551 - T 100 -16.7 -3.54129 | opp_overlap 3768551 3768557, overlap 3768557 CACATCCTTCGTAAA TAAAAAGAGCAGC CTAG GCTGCTCTTTTTA TTTCACGCATTATGA TERM 4566 3768551 - 3768580 + T 100 -16.7 -3.58533 | opp_overlap 3768551 3768557, overlap 3768557 CACATCCTTCGTAAA TAAAAAGAGCAGC CTAG GCTGCTCTTTTTA TTTCACGCATTATGA TERM 4567 3768574 - 3768557 - T 100 -11.3 -5.27335 | opp_overlap 3768551 3768557, overlap 3768551 CTTCGTAAATAAAAA GAGCAGC CTAG GCTGCTC TTTTTATTTCACGCA TERM 4568 3768557 - 3768574 + T 100 -11.3 -5.27335 | opp_overlap 3768557 3768551, overlap 3768551 CTTCGTAAATAAAAA GAGCAGC CTAG GCTGCTC TTTTTATTTCACGCA Shewana3_3143 3769370 - 3768597 - | hypothetical protein TERM 4569 3769444 - 3769426 - R 95 -6 -5.73339 | opp_overlap 3769426 ACAAGCATAAAAAAA CCACGT ACGGATG ACGTGG TTTTTCCGATAGCGC TERM 4570 3769426 - 3769444 + r 75 -6 -4.62069 | opp_overlap 3769426 ACAAGCATAAAAAAA CCACGT ACGGATG ACGTGG TTTTTCCGATAGCGC Shewana3_3144 3770944 - 3769478 - | amino acid carrier protein TERM 4571 3773391 - 3773379 - g 80 -3.4 -5.34381 | AAATTTAAAGAAAAA CCAT GGATG ATGG ATGAAATATTTACCC Shewana3_3145 3771375 - 3773741 + | putative phosphoketolase TERM 4572 3773801 - 3773772 - f 100 -12.3 -3.94482 | opp_overlap 3773778, overlap 3773778 ACAAATTAAATACAA TTAAAAGGCATCC TTCG GGATGCCTTTTTA ACATCAATCAAAAGT TERM 4573 3773795 - 3773778 - f 100 -11.3 -4.58724 | opp_overlap 3773778, overlap 3773772 TAAATACAATTAAAA GGCATCC TTCG GGATGCC TTTTTAACATCAATC TERM 4574 3773778 - 3773795 + F 100 -11.3 -4.62783 | opp_overlap 3773778 3773772 TAAATACAATTAAAA GGCATCC TTCG GGATGCC TTTTTAACATCAATC Shewana3_3146 3773981 - 3775102 + | OmpA/MotB domain-containing protein TERM 4575 3775119 - 3775148 + F 100 -12.3 -4.8667 | opp_overlap 3775125, overlap 3775125 TGCACTCTTAAGAAT AAAAAAGTCGCTG CTTG CAGCGACTTTTTA TTTTTATAACATCTA TERM 4576 3775125 - 3775142 + F 100 -11.3 -5.69262 | opp_overlap 3775125, overlap 3775119 CTTAAGAATAAAAAA GTCGCTG CTTG CAGCGAC TTTTTATTTTTATAA TERM 4577 3775142 - 3775125 - f 100 -11.3 -5.64873 | opp_overlap 3775125 3775119 CTTAAGAATAAAAAA GTCGCTG CTTG CAGCGAC TTTTTATTTTTATAA Shewana3_3147 3775351 - 3776307 + | transaldolase B TERM 4578 3776614 - 3776592 - g 70 -4.8 -4.70266 | overlap 3776593 AACACCACCGAAAAA CGTGCAGTAC TGC ATACCGCACT GCGCAGCACCGCCGA pgi 3776328 - 3777965 + | glucose-6-phosphate isomerase TERM 4579 3777998 - 3777971 - f 84 -11.4 -3.09681 | opp_overlap 3777977, overlap 3777977 TAAAATCTGATCGAA CAAAAAGCCAGC AATC GCTGGCTTTTTT ATTTTATCTTATTAA TERM 4580 3777992 - 3777977 - f 100 -10.4 -5.10461 | opp_overlap 3777977, overlap 3777971 CTGATCGAACAAAAA GCCAGC AATC GCTGGC TTTTTTATTTTATCT TERM 4581 3777977 - 3777992 + F 100 -10.4 -5.8901 | opp_overlap 3777977 3777971 CTGATCGAACAAAAA GCCAGC AATC GCTGGC TTTTTTATTTTATCT Shewana3_3149 3778182 - 3778367 + | hypothetical protein TERM 4582 3778393 - 3778421 + T 100 -14.7 -3.93136 | opp_overlap 3778395 3778401, overlap 3778395 3778401 GATAAACAGCATATA AAGAAAAAGCGCC AAT GGCGCTTTTTCTG TTTCTACGTACCTCT TERM 4583 3778395 - 3778419 + T 100 -17.3 -3.55378 | opp_overlap 3778395 3778401, overlap 3778393 3778401 TAAACAGCATATAAA GAAAAAGCGCC AAT GGCGCTTTTTC TGTTTCTACGTACCT TERM 4584 3778419 - 3778395 - T 100 -17.3 -4.15197 | opp_overlap 3778395 3778393 3778401, overlap 3778401 TAAACAGCATATAAA GAAAAAGCGCC AAT GGCGCTTTTTC TGTTTCTACGTACCT TERM 4585 3778413 - 3778401 - T 100 -10.5 -5.42975 | opp_overlap 3778395 3778393 3778401, overlap 3778395 GCATATAAAGAAAAA GCGCC AAT GGCGC TTTTTCTGTTTCTAC TERM 4586 3778401 - 3778413 + T 100 -10.5 -5.24799 | opp_overlap 3778401 3778395, overlap 3778395 3778393 GCATATAAAGAAAAA GCGCC AAT GGCGC TTTTTCTGTTTCTAC Shewana3_3150 3778971 - 3778435 - | hemerythrin HHE cation binding domain-containing protein Shewana3_3151 3779901 - 3779194 - | hypothetical protein TERM 4587 3779279 - 3779259 - G 70 -9.7 -3.21747 | opp_overlap 3779259 3779260, overlap 3779260 TCATCTTAGCATCAA CCGACACTG GCT CAGTGTCGC TTTTTGCCAACTCAG TERM 4588 3779259 - 3779279 + g 90 -9.7 -4.58395 | opp_overlap 3779259 3779260, overlap 3779260 TCATCTTAGCATCAA CCGACACTG GCT CAGTGTCGC TTTTTGCCAACTCAG TERM 4589 3779260 - 3779278 + g 84 -13.2 -3.34716 | opp_overlap 3779260 3779259, overlap 3779259 CATCTTAGCATCAAC CGACACTG GCT CAGTGTCG CTTTTTGCCAACTCA TERM 4590 3779278 - 3779260 - G 77 -13.2 -2.52834 | opp_overlap 3779259 3779260, overlap 3779259 CATCTTAGCATCAAC CGACACTG GCT CAGTGTCG CTTTTTGCCAACTCA Shewana3_3152 3780496 - 3779894 - | ECF subfamily RNA polymerase sigma-24 factor Shewana3_3153 3782382 - 3780541 - | von Willebrand factor, type A TERM 4591 3781588 - 3781566 - G 77 -12 -3.10796 | CTGCACCATCTAACA CTACACCAGC GGC GCCGGCGTAG ACGACAATCGATACC TERM 4592 3781622 - 3781634 + g 71 -7.7 -4.0896 | opp_overlap 3781621 TCCTGAGCATCCAAT TGCTG GGT CAGCA TTTTCAAGGCAGTTT TERM 4593 3782221 - 3782232 + g 71 -5.8 -4.4078 | ACGCTCGGCCTGTTG CTCG GCGG CGAG TTTTGCTTGAGCGGC Shewana3_3154 3782596 - 3784368 + | putative sulfate transporter YchM TERM 4594 3784396 - 3784425 + F 91 -12.2 -3.55622 | opp_overlap 3784392 CGCTTATTATACCTG TCCCCTGAAACC TTTAAT GGTCTCAGGGGA TTTAAGCCCATTCAG Shewana3_3155 3784624 - 3785115 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit Shewana3_3156 3785115 - 3786212 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 4595 3786225 - 3786262 + F 100 -6.3 -5.82172 | opp_overlap 3786228 3786235, overlap 3786226 3786228 TAACCGAGCCGCAGA CCACTGATAAGGGAGCA AAAT TGTTCCCTTATCCGTCA TTTTTTTATCTTCGT TERM 4596 3786226 - 3786261 + F 86 -9.8 -4.06863 | opp_overlap 3786228 3786235, overlap 3786225 3786228 AACCGAGCCGCAGAC CACTGATAAGGGAGCA AAAT TGTTCCCTTATCCGTC ATTTTTTTATCTTCG TERM 4597 3786259 - 3786228 - f 74 -10.2 -2.62983 | opp_overlap 3786228 3786226 3786225, overlap 3786235 CCGAGCCGCAGACCA CTGATAAGGGAGCA AAAT TGTTCCCTTATCCG TCATTTTTTTATCTT TERM 4598 3786228 - 3786259 + F 100 -12.4 -3.59802 | opp_overlap 3786228 3786235, overlap 3786226 3786225 CCGAGCCGCAGACCA CTGATAAGGGAGCA AAAT TGTTCCCTTATCCG TCATTTTTTTATCTT TERM 4599 3787602 - 3787586 - g 71 -6.5 -4.18763 | overlap 3787599 AAGAAAGCGGTAAAA GCACTCG AAG CGATTGC GGCCAATAACCAATT Shewana3_3157 3786365 - 3787627 + | diguanylate cyclase with GAF sensor Shewana3_3158 3788295 - 3787678 - | hypothetical protein TERM 4600 3788375 - 3788401 + r 81 -10.9 -3.28791 | opp_overlap 3788360, overlap 3788377 GCGCCAATCCTGTTT TTGGCGCTAAG ATCAC CTTAGCGCCTA TTATCAGGCCAAACT TERM 4601 3788377 - 3788399 + r 100 -13.5 -3.21276 | opp_overlap 3788360, overlap 3788375 GCCAATCCTGTTTTT GGCGCTAAG ATCAC CTTAGCGCC TATTATCAGGCCAAA Shewana3_3159 3788913 - 3788452 - | hypothetical protein Shewana3_3160 3790562 - 3788913 - | glutamate-cysteine ligase TERM 4602 3790082 - 3790096 + g 71 -5.7 -4.4261 | AACGGTAGGTTAAGC CCTTG CGATA CAAGG TTTTCATCTTACCCG TERM 4603 3790666 - 3790630 - R 100 -12.4 -4.36914 | gap 1, opp_overlap 3790627 3790634, overlap 3790631 3790634 TCTTCTGCGATAAAA CGC-AGACGGTGACAGC TAAT GCTGTCACCGTCTTACT CGTTAATACTTTAGA TERM 4604 3790665 - 3790631 - R 100 -15.9 -3.21934 | gap 1, opp_overlap 3790627 3790634, overlap 3790630 3790634 CTTCTGCGATAAAAC GC-AGACGGTGACAGC TAAT GCTGTCACCGTCTTAC TCGTTAATACTTTAG TERM 4605 3790634 - 3790661 + r 100 -20 -3.29364 | opp_overlap 3790631 3790630 3790634, overlap 3790627 CTGCGATAAAACGCA GACGGTGACAGC TAAT GCTGTCACCGTC TTACTCGTTAATACT TERM 4606 3790661 - 3790634 - R 100 -20 -2.80077 | opp_overlap 3790634 3790627, overlap 3790631 3790630 CTGCGATAAAACGCA GACGGTGACAGC TAAT GCTGTCACCGTC TTACTCGTTAATACT Shewana3_3161 3793595 - 3790746 - | peptidase M16 domain-containing protein TERM 4607 3791714 - 3791724 + g 70 -3.2 -4.78237 | CCTCGTTAAACGCAG GTTG GAA CAGC TTTTCTTCTAAAATG TERM 4608 3793770 - 3793755 - R 71 -9 -3.26998 | overlap 3793750 ACTAAACCAATGTAA TGTGGC GGCC GCCACA ATAAGGTAACGCAGG Shewana3_3162 3794162 - 3793737 - | hypothetical protein Shewana3_3163 3794450 - 3795703 + | sodium:dicarboxylate symporter TERM 4609 3795736 - 3795767 + T 100 -14.7 -3.45602 | opp_overlap 3795728 3795736 3795743, overlap 3795743 TTAAGAGTTATCCAA TAAAAAAGACCGC TTAGAT GCGGTCTTTTTTA TTATCCGTATTTCAT TERM 4610 3795767 - 3795736 - T 100 -14.7 -3.09987 | opp_overlap 3795736 3795743, overlap 3795728 3795743 TTAAGAGTTATCCAA TAAAAAAGACCGC TTAGAT GCGGTCTTTTTTA TTATCCGTATTTCAT TERM 4611 3795743 - 3795760 + T 100 -8.4 -5.56673 | opp_overlap 3795736 3795743, overlap 3795736 TTATCCAATAAAAAA GACCGC TTAGAT GCGGTC TTTTTTATTATCCGT TERM 4612 3795760 - 3795743 - T 100 -8.4 -5.4833 | opp_overlap 3795743 3795736, overlap 3795736 TTATCCAATAAAAAA GACCGC TTAGAT GCGGTC TTTTTTATTATCCGT TERM 4613 3796034 - 3796054 + T 84 -9.8 -3.83026 | opp_overlap 3796034 3796052, overlap 3796025 GTTAACGGCTTAAAA GCCTATTG TTAAC CAATAGGC TTTGCTCTAGCCACC TERM 4614 3796054 - 3796034 - T 88 -9.8 -4.11484 | opp_overlap 3796025 3796034, overlap 3796052 GTTAACGGCTTAAAA GCCTATTG TTAAC CAATAGGC TTTGCTCTAGCCACC Shewana3_3164 3797211 - 3796081 - | sodium ion-translocating decarboxylase, beta subunit Shewana3_3165 3799055 - 3797220 - | pyruvate carboxylase subunit B Shewana3_3166 3799324 - 3799067 - | sodium pump decarboxylases, gamma subunit TERM 4615 3799869 - 3799851 - R 100 -10.3 -6.20267 | opp_overlap 3799851 CGAAAAACAAAAAAA GCCAGCT TATTC AGCTGGC TTTCTGCTCTCTTAT TERM 4616 3799851 - 3799869 + r 89 -10.3 -4.07107 | opp_overlap 3799851 CGAAAAACAAAAAAA GCCAGCT TATTC AGCTGGC TTTCTGCTCTCTTAT TERM 4617 3800087 - 3800099 + r 72 -6.3 -4.3277 | AGCTGGTTTGAGTTG CACTT CTT AAGTG TTTGTATTCTATCTA TERM 4618 3801349 - 3801321 - R 72 -8.1 -3.85698 | TGTGTTTTTGATAAA CAGTTGCAGCCAC CTG GTATCTGCGACTG CCGTCAGCTTAGGGA TERM 4619 3801803 - 3801819 + r 85 -9.4 -4.08546 | overlap 3801785 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 4620 3802601 - 3802613 + r 83 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 4621 3803181 - 3803221 + r 76 -2.7 -5.27779 | opp_overlap 3803188 3803193 3803195 3803197, overlap 3803195 GGACTCGCCTTAGAC TTGAATATTCAAGACACTT AAA AAGTGTTTTAAGAACTCAA TTTTTTCGTATTAAC TERM 4622 3805056 - 3805078 + r 70 -7.1 -3.76952 | gap 1 TGATGTAAATTTTGA TTACTC-GCC AAAC GGCAGAGTAA TTTCGATTAACTCAA TERM 4623 3805183 - 3805197 + r 71 -8.6 -3.55563 | TCAGCGGGTCAGGGC TGCGTA TTC TACGCA TTTCCCCAGTCGCGT TERM 4624 3805209 - 3805240 + r 75 -8.8 -3.60627 | overlap 3805219 CGCATTTCCCCAGTC GCGTCAAGGCGTTT TTGC AAACTTCTTGATGC TTTCGAATCAAGTGC TERM 4625 3805591 - 3805557 - R 86 -7.9 -4.71828 | ATCGGATGAAGAAAA CGGTTCAAGAGTAAC GAATA GCGATTCTTGAACCG TAGAACTAACTCATG Shewana3_3167 3806458 - 3805640 - | CDP-diacylglycerol--serine O-phosphatidyltransferase Shewana3_3168 3806550 - 3807014 + | hypothetical protein TERM 4626 3807147 - 3807129 - T 100 -13.2 -5.77988 | opp_overlap 3807129 ATAGATATAAAAAAA CCGAAGTC TAA GACTTCGG TTTTTTATTTAGGTT TERM 4627 3807129 - 3807147 + T 100 -13.2 -5.67283 | opp_overlap 3807129 ATAGATATAAAAAAA CCGAAGTC TAA GACTTCGG TTTTTTATTTAGGTT Shewana3_3169 3809770 - 3807197 - | ATPase Shewana3_3170 3810676 - 3809888 - | hypothetical protein TERM 4628 3809993 - 3810007 + g 71 -6.4 -4.41348 | overlap 3809994 ATCGGCGCTGTAGAC TTGGGT AAT ACCCAG TTTCTTTAAGCGCAA Shewana3_3171 3811651 - 3810680 - | ribosomal large subunit pseudouridine synthase D Shewana3_3172 3811687 - 3812535 + | putative lipoprotein TERM 4629 3812543 - 3812561 + F 100 -13.2 -5.9362 | opp_overlap 3812543 CGAACTAAGCGTAAA TGCCCCTT TAT AAGGGGCA TTTTTTTATCTTTTG TERM 4630 3812561 - 3812543 - f 100 -13.2 -3.69434 | opp_overlap 3812543 CGAACTAAGCGTAAA TGCCCCTT TAT AAGGGGCA TTTTTTTATCTTTTG TERM 4631 3813009 - 3812993 - f 70 -5.1 -4.56914 | overlap 3812995 CGATTCAAATTAAAA TTCGACA CAA TGTCGGA TACCATTGCAGATGT TERM 4632 3813113 - 3813127 + F 100 -11.4 -5.76633 | opp_overlap 3813113 GTACCAACATTTAAA CCTCGC TTA GCGAGG TTTTTTTGTATCTGC TERM 4633 3813127 - 3813113 - f 95 -11.4 -3.77831 | opp_overlap 3813113 GTACCAACATTTAAA CCTCGC TTA GCGAGG TTTTTTTGTATCTGC TERM 4634 3813599 - 3813616 + G 76 -6.9 -4.49556 | opp_overlap 3813592 3813591 GGAAGAATCGCAACT CGCGCAG CAAG CTGAGCG TTTATTTACTCCCGC TERM 4635 3814694 - 3814668 - g 76 -8 -4.14392 | GGCCAAGCGTTAAAA GAGATTGTCGCC TCC GTCGACAATATC ACCGAGTTAAATACT Shewana3_3173 3813267 - 3814892 + | methyl-accepting chemotaxis sensory transducer TERM 4636 3814899 - 3814929 + F 100 -14.1 -3.40867 | opp_overlap 3814895, overlap 3814900 AGGCTTTAACACTTC TTCGTAGGCACAG GTTCA CTGTGCCTACGAC TTCATTACTCAATAC TERM 4637 3814900 - 3814928 + F 100 -17.6 -2.64199 | opp_overlap 3814895, overlap 3814899 GGCTTTAACACTTCT TCGTAGGCACAG GTTCA CTGTGCCTACGA CTTCATTACTCAATA TERM 4638 3814984 - 3814960 - f 100 -11.6 -4.84359 | opp_overlap 3814960 CTATCTTCACAAAAA TCACACCTAA CAGTT TTAGGTGTGA TTTTTATTGATCCAA TERM 4639 3814960 - 3814984 + F 100 -11.6 -5.1356 | opp_overlap 3814960 CTATCTTCACAAAAA TCACACCTAA CAGTT TTAGGTGTGA TTTTTATTGATCCAA Shewana3_3174 3815059 - 3816252 + | globin TERM 4640 3816334 - 3816287 - T 75 -10.6 -2.89212 | opp_overlap 3816288 3816291, overlap 3816291 3816298 ATCATCGATAATAAC TCAAGCACAAAGCCATCTTCCC GTAA GGCAAGGTGGCTTAATGCTTGT TCCATAAACGCTGAA TERM 4641 3816288 - 3816333 + T 100 -14.1 -3.05816 | opp_overlap 3816287 3816291 3816298, overlap 3816291 TCATCGATAATAACT CAAGCACAAAGCCATCTTCCC GTAA GGCAAGGTGGCTTAATGCTTG TTCCATAAACGCTGA TERM 4642 3816291 - 3816330 + T 80 -10 -3.67597 | opp_overlap 3816287 3816291 3816298, overlap 3816288 TCGATAATAACTCAA GCACAAAGCCATCTTCCC GTAA GGCAAGGTGGCTTAATGC TTGTTCCATAAACGC TERM 4643 3816330 - 3816291 - T 76 -10 -3.31443 | opp_overlap 3816291 3816288, overlap 3816287 3816298 TCGATAATAACTCAA GCACAAAGCCATCTTCCC GTAA GGCAAGGTGGCTTAATGC TTGTTCCATAAACGC TERM 4644 3816323 - 3816298 - T 73 -7.5 -4.07975 | opp_overlap 3816291 3816288, overlap 3816291 3816287 TAACTCAAGCACAAA GCCATCTTCCC GTAA GGCAAGGTGGC TTAATGCTTGTTCCA Shewana3_3175 3817075 - 3816350 - | pseudouridine synthase, Rsu Shewana3_3176 3817710 - 3817090 - | transcriptional regulator Shewana3_3177 3817857 - 3818471 + | NADPH-dependent FMN reductase Shewana3_3178 3818522 - 3818938 + | glyoxalase/bleomycin resistance protein/dioxygenase Shewana3_3179 3819083 - 3819553 + | hypothetical protein TERM 4645 3819579 - 3819607 + T 100 -17.7 -3.09635 | opp_overlap 3819579 3819585, overlap 3819585 ACAGGCATTCAAAAA CAAAAAGGCTGAA TCA TTCAGCCTTTTTG TTAAATACTCAACAT TERM 4646 3819607 - 3819579 - T 100 -17.7 -4.67755 | opp_overlap 3819579 3819585, overlap 3819585 ACAGGCATTCAAAAA CAAAAAGGCTGAA TCA TTCAGCCTTTTTG TTAAATACTCAACAT TERM 4647 3819585 - 3819601 + T 100 -10.9 -5.11063 | opp_overlap 3819579 3819585, overlap 3819579 ATTCAAAAACAAAAA GGCTGAA TCA TTCAGCC TTTTTGTTAAATACT TERM 4648 3819601 - 3819585 - T 100 -10.9 -5.63236 | opp_overlap 3819585 3819579, overlap 3819579 ATTCAAAAACAAAAA GGCTGAA TCA TTCAGCC TTTTTGTTAAATACT Shewana3_3180 3820204 - 3819635 - | GPR1/FUN34/yaaH family protein TERM 4649 3820238 - 3820260 + H 72 -6.3 -4.26938 | overlap 3820235 3820241 AATAAGTTAATCTCA GCACCTAGA TACAC TCTAGGTAC TTATTATTTTATAAA TERM 4650 3820544 - 3820522 - H 82 -7.7 -4.44608 | overlap 3820519 3820524 CCCACCTAAAAATAA CGTTAGCCC ACATA GGGCTAAAG CCTAAAAAACATTAA Shewana3_3181 3820931 - 3821167 + | hypothetical protein TERM 4651 3821224 - 3821246 + F 100 -10.7 -5.06414 | AGCGCCTTGTCCTTA TGCCATTCA CATTC TGAATGGCA TTTTTATTGGGCAGA Shewana3_3182 3821466 - 3822380 + | MltA-interacting MipA family protein Shewana3_3183 3822407 - 3822799 + | hypothetical protein Shewana3_3184 3822799 - 3823512 + | two component transcriptional regulator TERM 4652 3824295 - 3824285 - g 74 -6.8 -4.39318 | opp_overlap 3824291 TAAGGAAATGGAAAA CCTG CTG CAGG AACTGCTGACTTACG Shewana3_3185 3823521 - 3824789 + | ATPase domain-containing protein Shewana3_3186 3825126 - 3824818 - | hypothetical protein Shewana3_3187 3825284 - 3825820 + | hypothetical protein TERM 4653 3825950 - 3825912 - T 100 -17.7 -3.08679 | opp_overlap 3825923, overlap 3825917 3825923 GTGGCTTATGCAATA GCCAATAAAAATGGGCG ATTAA CGCCCATTTTTATTGCC AAAGGAAGGTCAAAC TERM 4654 3825945 - 3825917 - T 100 -14.8 -3.19522 | opp_overlap 3825923, overlap 3825912 3825923 TTATGCAATAGCCAA TAAAAATGGGCG ATTAA CGCCCATTTTTA TTGCCAAAGGAAGGT TERM 4655 3825923 - 3825939 + T 100 -9.4 -5.06414 | opp_overlap 3825917 3825912 3825923 AATAGCCAATAAAAA TGGGCG ATTAA CGCCCA TTTTTATTGCCAAAG TERM 4656 3825939 - 3825923 - T 100 -9.4 -5.12971 | opp_overlap 3825923, overlap 3825917 3825912 AATAGCCAATAAAAA TGGGCG ATTAA CGCCCA TTTTTATTGCCAAAG cysM 3826867 - 3825989 - | cysteine synthase B TERM 4657 3827849 - 3827836 - g 70 -3.1 -4.82901 | CGTCGTTGAGAAAAA CGCTA AGCG TAACG GCACACAAGAATTAG Shewana3_3189 3827075 - 3828082 + | sulfate ABC transporter, periplasmic sulfate-binding protein TERM 4658 3828114 - 3828141 + F 81 -11.3 -2.88822 | opp_overlap 3828112 3828119, overlap 3828119 CTAAGTCACCAAATC CACAACCCGGG CAATGT CCCGGGTTTTG TGGTTATATCGCGGC TERM 4659 3828136 - 3828119 - f 78 -9.8 -3.48807 | opp_overlap 3828114 3828119, overlap 3828112 TCACCAAATCCACAA CCCGGG CAATGT CCCGGG TTTTGTGGTTATATC TERM 4660 3828119 - 3828136 + F 100 -9.8 -4.60073 | opp_overlap 3828119 3828112, overlap 3828114 TCACCAAATCCACAA CCCGGG CAATGT CCCGGG TTTTGTGGTTATATC Shewana3_3190 3828266 - 3829111 + | sulfate ABC transporter, inner membrane subunit CysT Shewana3_3191 3829121 - 3829990 + | sulfate ABC transporter, inner membrane subunit CysW Shewana3_3192 3829987 - 3831117 + | sulfate ABC transporter, ATPase subunit TERM 4661 3831176 - 3831155 - T 100 -14.5 -5.62045 | opp_overlap 3831155 ACACATAACAAAAAA GCGCTGACA AAAT TGTCAGCGC TTTTTATTCACTCTT TERM 4662 3831155 - 3831176 + T 100 -14.5 -5.12971 | opp_overlap 3831155 ACACATAACAAAAAA GCGCTGACA AAAT TGTCAGCGC TTTTTATTCACTCTT Shewana3_3193 3832385 - 3831240 - | secretion protein HlyD family protein Shewana3_3194 3832803 - 3832387 - | hypothetical protein TERM 4663 3832670 - 3832698 + g 83 -5.4 -5.07107 | gap 1, overlap 3832671 3832694 ACCCAGCCCGCGATA TGCAATGCATCCT GCTG GGGATG-ATTGCG TTTTTTCGCAATTTC TERM 4664 3832786 - 3832776 - G 100 -6.8 -5.49579 | TGACAAAAAACAAAA TGCC TAA GGCA AAATAATCCAAAAAC Shewana3_3195 3833759 - 3833304 - | hypothetical protein Shewana3_3196 3835550 - 3833991 - | ATPase central domain-containing protein TERM 4665 3835695 - 3835684 - H 71 -2.2 -5.09762 | ATCCCAATATAAAAA GGTA CCCA CACC ATGATAGGAACTCCC purT 3835696 - 3836871 + | phosphoribosylglycinamide formyltransferase 2 TERM 4666 3836930 - 3836955 + F 100 -20.5 -3.64283 | overlap 3836952 TACTGTGATCAGCAC CGCGCCCAGCA CTAT TGCTGGGCGCG TTATTAAGGCGTTTA TERM 4667 3837354 - 3837343 - g 70 -2.2 -4.9218 | CATCGAGCATAAAAA CAGA CACC TCCG CCCCGCGTGAATTAA TERM 4668 3837442 - 3837418 - g 75 -9.3 -3.91911 | opp_overlap 3837400 3837417 3837418 GCGATGCTAATCAAA GCGCCTTGG TCGAAAG CCAAAGCGC GTTTAATGGCGTGCG Shewana3_3198 3837033 - 3838613 + | hypothetical protein Shewana3_3199 3838603 - 3840882 + | tetratricopeptide domain-containing protein TERM 4669 3840920 - 3840892 - f 100 -13.3 -4.58297 | overlap 3840886 CAGTAAAAACACAAA GCGCCTTTCTT ATCACCA AAGAAAGGCGC TAAAGCAGAGCTGAT TERM 4670 3841345 - 3841375 + F 72 -9.9 -2.80821 | gap 1, opp_overlap 3841354, overlap 3841354 ATTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TAGTGTATTTGGCAG TERM 4671 3841365 - 3841354 - f 73 -7.2 -4.09511 | opp_overlap 3841345 3841354 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATAGTG TERM 4672 3841354 - 3841365 + F 81 -7.2 -4.60487 | opp_overlap 3841354, overlap 3841345 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATAGTG TERM 4673 3841972 - 3841982 + F 70 -5.4 -4.44187 | AAATATTTGTCGATT CCAA TTT TTGG TTTATCTTTCTATGT TERM 4674 3842400 - 3842364 - f 70 -5.9 -4.35604 | gap 1, opp_overlap 3842372, overlap 3842367 TTAACGCATAACAAA TAAGGATA-GGCCGCG CGTAGC CGCGACCTTATCCCAA GTGTTGAACAAGCCC TERM 4675 3842397 - 3842367 - f 93 -9.8 -4.28115 | gap 1, opp_overlap 3842372, overlap 3842364 ACGCATAACAAATAA GGATA-GGCCGCG CGTAGC CGCGACCTTATCC CAAGTGTTGAACAAG TERM 4676 3842778 - 3842816 + F 100 -9.7 -5.24129 | gap 1 TGATGCTAATTCAAC GCCCTTCTACCAT-GTGA TAAA TCGCTGTGTTAGAAGGGC TTTTTTGTGCGGCGA TERM 4677 3842979 - 3843017 + G 100 -9.7 -5.24129 | gap 1 TGATGCTAATTCAAC GCCCTTCTACCAT-GTGA TAAA TCGCTGTGTTAGAAGGGC TTTTTTGTGCGGCGA Shewana3_3200 3842938 - 3843972 + | hypothetical protein TERM 4678 3844037 - 3844072 + T 100 -13.5 -4.43877 | opp_overlap 3844039, overlap 3844039 GATAATTTCGCGCAA AACATAGCACGCTTT TGTCCC AAAGCGTGCTATGTA TTTCTTTAAAACTTA TERM 4679 3844070 - 3844039 - T 100 -16.1 -4.08692 | opp_overlap 3844037 3844039 TAATTTCGCGCAAAA CATAGCACGCTTT TGTCCC AAAGCGTGCTATG TATTTCTTTAAAACT TERM 4680 3844039 - 3844070 + T 100 -16.1 -3.81958 | opp_overlap 3844039, overlap 3844037 TAATTTCGCGCAAAA CATAGCACGCTTT TGTCCC AAAGCGTGCTATG TATTTCTTTAAAACT TERM 4681 3844164 - 3844137 - T 88 -12.6 -2.62263 | AGGTTTGCGAGACGA CCGTCCGCCCCA TGGA CGGGGCGGTCGA GCATCCACGGACGGA Shewana3_3201 3845311 - 3844358 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Shewana3_3202 3846002 - 3845358 - | hypothetical protein TERM 4682 3845461 - 3845450 - G 84 -4.4 -5.31275 | CTTCATTACAAAAAA GTGA GGTG TCAC TGTCAATAAAGGTCG djlA 3846846 - 3846058 - | DNA-J like membrane chaperone protein TERM 4683 3846410 - 3846425 + g 72 -8.2 -3.86311 | GCGGCATCGAGCTCA CCGTCC GATA GGGCGG TTTGAATTTGGATCT Shewana3_3204 3847617 - 3846952 - | nucleotidyl transferase Shewana3_3205 3848705 - 3847614 - | aminoglycoside phosphotransferase TERM 4684 3849764 - 3849747 - g 74 -4.8 -4.87665 | opp_overlap 3849747, overlap 3849748 CGCCATCGATAAAAA CTGGCG GGTACT CGCCAA CTTTACTGAAGTGTC TERM 4685 3850693 - 3850668 - g 71 -7.6 -4.03888 | GAGCGATAACAAGAA GACCGAAGTC ACCTTA GACTTCCGTC CCGAAGCCAATAAAC Shewana3_3206 3848821 - 3851118 + | organic solvent tolerance protein TERM 4686 3851165 - 3851153 - f 70 -7.7 -3.68222 | GCTGAACCTCAACAA GGACT GAG AGTCC AAACAGGTTAATGAA TERM 4687 3851762 - 3851750 - g 74 -7.7 -4.15788 | AACTGCGTGAAGAAA TCACC CTA GGTGA AATTCAACGTATCCA Shewana3_3207 3851338 - 3852642 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 4688 3852715 - 3852751 + G 100 -15.9 -3.87815 | overlap 3852722 CCCGATTTAGTCGTG CAACTCGCTCAGCAGGC TTG GCCTGCTGAGTTAGTCG TTTGTGCGGATCCCG TERM 4689 3852722 - 3852744 + G 100 -17.8 -3.35467 | overlap 3852715 TAGTCGTGCAACTCG CTCAGCAGGC TTG GCCTGCTGAG TTAGTCGTTTGTGCG TERM 4690 3853304 - 3853290 - g 73 -11.4 -3.02263 | ACACGCGGGTGAAGA CGGCCA CCT TGGCCG GGAAGAAATCGATGT Shewana3_3208 3852649 - 3853635 + | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 4691 3853643 - 3853632 - f 71 -3 -5.03314 | GTTATCCTCAAAAAA CTAA ACGA TTAG ATATTAATGAGTAGC TERM 4692 3854262 - 3854247 - g 70 -3.2 -4.87665 | CCCTATGCAGAAAAA CCTTTC CCCT GTAAGG ATGTGAATGTACTGC ksgA 3853650 - 3854456 + | dimethyladenosine transferase TERM 4693 3854473 - 3854490 + F 71 -9.1 -3.26444 | overlap 3854470 CAATATCAGTTTGAT GGGCACT TTAG GGTGCCC TATCTTATTCAAGGG apaG 3854512 - 3854892 + | ApaG apaH 3854914 - 3855738 + | diadenosine tetraphosphatase TERM 4694 3855746 - 3855732 - f 73 -2.8 -5.16472 | AAAAAGGTTAAAAAA GGGTTA AAC TAAGCC CGAGAGTGGTCGATA TERM 4695 3856375 - 3856353 - g 71 -6.2 -4.36485 | overlap 3856370 AGAAAACAGCCAAAA CCCCGATGCT CAG AGTATCGCGG CCTCTGCCAGCGCTA Shewana3_3212 3855835 - 3857856 + | methyl-accepting chemotaxis sensory transducer TERM 4696 3857873 - 3857900 + T 100 -12 -3.83154 | opp_overlap 3857863 3857876 3857878, overlap 3857878 CAAACGCTCAAGTAT GAACAGGGTCGC AATT GCGGCCCTTTTC TTTGGATTGTGATTG TERM 4697 3857878 - 3857895 + T 100 -10.5 -4.94962 | opp_overlap 3857876 3857878, overlap 3857873 GCTCAAGTATGAACA GGGTCGC AATT GCGGCCC TTTTCTTTGGATTGT TERM 4698 3858164 - 3858146 - T 100 -13.2 -5.252 | opp_overlap 3858146 GACGCCCATAAAAAA TGCCGAAC TCA GTTCGGCA TTTTAAGCATCATTC TERM 4699 3858146 - 3858164 + T 100 -13.2 -4.12902 | opp_overlap 3858146 GACGCCCATAAAAAA TGCCGAAC TCA GTTCGGCA TTTTAAGCATCATTC Shewana3_3213 3858635 - 3858222 - | hypothetical protein Shewana3_3214 3859320 - 3858838 - | dihydrofolate reductase Shewana3_3215 3859816 - 3859343 - | hypothetical protein TERM 4700 3859630 - 3859620 - G 70 -8.2 -3.73402 | ATAGTTCCCACTAAA GCCG CGG CGGC AAAGGTCGCCCATTC Shewana3_3216 3860574 - 3859813 - | hypothetical protein obgE 3861768 - 3860602 - | GTPase ObgE TERM 4701 3861542 - 3861553 + g 71 -7.2 -4.08216 | TGGCCGGTACAGTCA CGGC CACG GCCG TTTTCACCGCGCTCA TERM 4702 3861961 - 3861930 - R 100 -11.6 -5.39755 | gap 1, opp_overlap 3861936, overlap 3861936 TAGAAGCATAAAAAA CAG-AAAGCCCCACC AAT GGCGGGGCTTTACAG TATAAGCTAGACTCG TERM 4703 3861936 - 3861954 + r 90 -11.6 -3.63805 | opp_overlap 3861930 3861936 CATAAAAAACAGAAA GCCCCACC AAT GGCGGGGC TTTACAGTATAAGCT TERM 4704 3861954 - 3861936 - R 100 -13.8 -4.68607 | opp_overlap 3861936, overlap 3861930 CATAAAAAACAGAAA GCCCCACC AAT GGCGGGGC TTTACAGTATAAGCT rpmA 3862235 - 3861981 - | 50S ribosomal protein L27 rplU 3862561 - 3862250 - | 50S ribosomal protein L21 TERM 4705 3862408 - 3862423 + g 70 -4.6 -4.59773 | opp_overlap 3862410, overlap 3862410 CGCCAGCTACTAAAG GAGCAC CAAC GTGCAC TTTTTCACCGTCAGC TERM 4706 3862502 - 3862528 + g 75 -9.4 -3.90922 | opp_overlap 3862500 3862504, overlap 3862504 3862526 TAATTTTTCTAAACG AACTGTGTGGCC TGG GGCTACACGGTG TTGTTTACCACCACT TERM 4707 3862504 - 3862526 + g 82 -12 -3.54488 | opp_overlap 3862504 3862500, overlap 3862502 ATTTTTCTAAACGAA CTGTGTGGCC TGG GGCTACACGG TGTTGTTTACCACCA TERM 4708 3863522 - 3863512 - g 73 -5.4 -4.67755 | overlap 3863514 AGAGTTAGGTAAAAA CATC GGT GATG ACCTCGCCGAAGGTA Shewana3_3220 3862811 - 3863806 + | polyprenyl synthetase TERM 4709 3863859 - 3863821 - T 100 -14.8 -3.85817 | opp_overlap 3863831, overlap 3863786 3863784 3863822 3863831 ATTGGCTGCGATAAA CCAATAAAAAGGCCTTGC TTA GCAAGGCCTTTTTATTTT TAACGTTCTTTATCA TERM 4710 3863858 - 3863822 - T 100 -18.3 -2.91276 | opp_overlap 3863831, overlap 3863786 3863784 3863821 3863831 TTGGCTGCGATAAAC CAATAAAAAGGCCTTGC TTA GCAAGGCCTTTTTATTT TTAACGTTCTTTATC TERM 4711 3863849 - 3863831 - T 100 -14.6 -5.25906 | opp_overlap 3863831, overlap 3863822 3863821 ATAAACCAATAAAAA GGCCTTGC TTA GCAAGGCC TTTTTATTTTTAACG TERM 4712 3863831 - 3863849 + T 100 -14.6 -5.61881 | opp_overlap 3863831 3863822 3863821 ATAAACCAATAAAAA GGCCTTGC TTA GCAAGGCC TTTTTATTTTTAACG Shewana3_3221 3864548 - 3863883 - | uracil-DNA glycosylase TERM 4713 3864019 - 3864038 + g 76 -3.4 -5.15634 | AGTATTTGATGCTGT GGCGCAGT AATC ACCGCCCC TTTTTTGATGGCATG Shewana3_3222 3865276 - 3864842 - | hypothetical protein Shewana3_3223 3865673 - 3865987 + | hypothetical protein TERM 4714 3866025 - 3866060 + T 100 -15 -3.04792 | opp_overlap 3866034, overlap 3866034 CACCTGCTAAAATCC CATAAAAAACGCCATC TTGT GATGGCGTTTTTTATC TCTTCGCACTCATCA TERM 4715 3866034 - 3866051 + T 100 -11.3 -5.47431 | opp_overlap 3866034, overlap 3866025 AAATCCCATAAAAAA CGCCATC TTGT GATGGCG TTTTTTATCTCTTCG TERM 4716 3866051 - 3866034 - T 100 -11.3 -5.28826 | opp_overlap 3866025 3866034 AAATCCCATAAAAAA CGCCATC TTGT GATGGCG TTTTTTATCTCTTCG Shewana3_3224 3866707 - 3866093 - | lysine exporter protein LysE/YggA TERM 4717 3866747 - 3866732 - R 100 -10.4 -5.04325 | TTTAAAGCATAAAAA GGCCCT CAAT AGGGCC TTCACAGGAGTGGCA Shewana3_3225 3868344 - 3866794 - | peptidase S10, serine carboxypeptidase TERM 4718 3866860 - 3866822 - G 74 -3.7 -4.93296 | overlap 3866854 TTAGGATGATAAAAA GCGCGGATATCTTGCAC CAGTT GTGCAAGCGACGCGGGC TCCACATACATCATA TERM 4719 3867502 - 3867516 + g 71 -6.4 -4.35483 | GAGCCCTAAGGCCTT GTCAGC ATC GTTGAC TTTATTGTGATAAAA TERM 4720 3868019 - 3867979 - G 74 -9.5 -3.53091 | opp_overlap 3867981, overlap 3867965 ACGCTTTGGCCCAAA GAGTCCCATGTGCAGCCAC AGC GAGGCAGAACCTGGGCCTC CGTTGAAAATAAACG Shewana3_3226 3868548 - 3869093 + | thiol:disulfide interchange protein, putative TERM 4721 3869159 - 3869173 + F 100 -11.4 -4.59853 | opp_overlap 3869159 TCGCGCAATAAAAAA GGCTGC ATC GCAGCC TTTTTGCACACTTCA TERM 4722 3869173 - 3869159 - f 100 -11.4 -5.4505 | opp_overlap 3869159 TCGCGCAATAAAAAA GGCTGC ATC GCAGCC TTTTTGCACACTTCA Shewana3_3227 3869605 - 3871071 + | Fis family transcriptional regulator TERM 4723 3871113 - 3871082 - f 100 -18.2 -4.59511 | opp_overlap 3871079 3871091 3871110 AATAGCCTTTAAAAA CGCGATATATCGCC AATT AGCGATATATCGCG ACATGCGTTAAATCA TERM 4724 3871836 - 3871848 + G 71 -10.5 -3.04715 | overlap 3871835 ATTTGGATATTTTTA CCGGC AAC GCCGG CTTTTGGACGACCTG Shewana3_3228 3871232 - 3872665 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 4725 3872791 - 3872819 + F 100 -9.5 -5.16237 | ACTTCTATGAATGAT GCCCGTTGGATCA CTG TGGTTCGCCGGGC TTTTTTACTCACCTT Shewana3_3229 3873063 - 3873287 + | hypothetical protein TERM 4726 3873460 - 3873448 - g 79 -9.1 -4.23892 | GTCAATGAGCTAAAA TCGCG TCC CGCGA GTAAAGGTCAGTATG Shewana3_3230 3873280 - 3874062 + | methionine aminopeptidase, type I Shewana3_3231 3874299 - 3875903 + | AMP-dependent synthetase and ligase TERM 4727 3875949 - 3875979 + T 100 -12.7 -3.65902 | opp_overlap 3875949 3875954, overlap 3875954 GTCTTAAATCCAAAA CAAAACCCCAGAG CAACA CTCTGGGGTTTTA TTTACATGACATCCC TERM 4728 3875979 - 3875949 - T 100 -15.6 -4.35524 | opp_overlap 3875949 3875954, overlap 3875954 GTCTTAAATCCAAAA CAAAACCCCAGAGC AAC ACTCTGGGGTTTTA TTTACATGACATCCC TERM 4729 3875954 - 3875974 + T 100 -12.6 -4.90778 | opp_overlap 3875949 3875954, overlap 3875949 AAATCCAAAACAAAA CCCCAGAG CAACA CTCTGGGG TTTTATTTACATGAC TERM 4730 3875974 - 3875954 - T 100 -13.3 -5.14698 | opp_overlap 3875954 3875949, overlap 3875949 AAATCCAAAACAAAA CCCCAGAGC AAC ACTCTGGGG TTTTATTTACATGAC Shewana3_3232 3877862 - 3876006 - | lipid ABC transporter ATPase/inner membrane protein TERM 4731 3877571 - 3877531 - G 87 -7.4 -5.00895 | overlap 3877539 GTCATCAGATAAAAA CGGCAAAACACCGCTGTG CCACT CACGGCGGTGATCAGCAG CACTAACAGAATAAT TERM 4732 3877563 - 3877539 - G 91 -11.4 -4.32233 | overlap 3877531 ATAAAAACGGCAAAA CACCGCTGTG CCACT CACGGCGGTG ATCAGCAGCACTAAC TERM 4733 3878034 - 3878058 + r 72 -10.1 -2.73542 | opp_overlap 3878034 3878038, overlap 3878038 TGAGGAATATAACAA TAAACCCGC CTAGAGA GCGGGTTTA TGCTTGCGCCTTGAG TERM 4734 3878058 - 3878034 - R 90 -10.8 -3.98627 | opp_overlap 3878034 3878038, overlap 3878038 TGAGGAATATAACAA TAAACCCGCC TAGAG AGCGGGTTTA TGCTTGCGCCTTGAG TERM 4735 3878054 - 3878038 - R 78 -7.2 -4.57503 | opp_overlap 3878038 3878034, overlap 3878034 GAATATAACAATAAA CCCGCC TAGAG AGCGGG TTTATGCTTGCGCCT TERM 4736 3878061 - 3878095 + r 79 -8.6 -4.08767 | opp_overlap 3878082, overlap 3878062 GAGAGCGGGTTTATG CTTGCGCCTTGAGT CGATCAA GCTCAAGGCGCAGA TTTTCAAAACATAAG TERM 4737 3878062 - 3878094 + r 86 -12.1 -3.05046 | opp_overlap 3878082, overlap 3878061 AGAGCGGGTTTATGC TTGCGCCTTGAGT CGATCAA GCTCAAGGCGCAG ATTTTCAAAACATAA Shewana3_3233 3878703 - 3878146 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding Shewana3_3234 3879288 - 3878722 - | heme utilization protein HuvX TERM 4738 3879149 - 3879109 - G 74 -2.3 -5.19879 | overlap 3879111 CGTTAAAGACAAAAA CACCCGCTGCGCTTGCGGC AGT GCCGCGACCACATCAAGCT CGGCAATCCCTAATT TERM 4739 3879147 - 3879111 - G 71 -7.1 -4.22132 | overlap 3879109 TTAAAGACAAAAACA CCCGCTGCGCTTGCGGC AGT GCCGCGACCACATCAAG CTCGGCAATCCCTAA Shewana3_3235 3881397 - 3879310 - | TonB-dependent heme/hemoglobin receptor family protein TERM 4740 3881213 - 3881223 + g 73 -5.4 -4.65895 | GCAACACTGCGGCTC GTCT GGG AGAC TTTTTCACTCAAGCG TERM 4741 3882460 - 3882431 - g 71 -11.5 -2.79831 | TCAAGCGGCATTAGA GGCGGTTGAAACC TGGG AGTTTCAAGCGCC CACCAACAAACTGGC Shewana3_3236 3881646 - 3882521 + | TonB family protein Shewana3_3237 3882611 - 3883342 + | MotA/TolQ/ExbB proton channel Shewana3_3238 3883339 - 3883776 + | biopolymer transport protein ExbD/TolR TERM 4742 3884451 - 3884433 - g 73 -10.2 -3.29649 | overlap 3884434 3884436 ATGTTATTACAGGAA GGACGCGG CGC CCGCGTCG GCGGTAAAGGCACTG TERM 4743 3884450 - 3884434 - g 78 -13.7 -2.57468 | overlap 3884433 3884436 TGTTATTACAGGAAG GACGCGG CGC CCGCGTC GGCGGTAAAGGCACT Shewana3_3239 3883869 - 3884789 + | periplasmic binding protein TERM 4744 3885711 - 3885722 + G 79 -7.2 -4.56597 | overlap 3885695 3885695 GCACTTGCCGATATC GGCG CGCG CGCC TTTTTACCCCCAGCG Shewana3_3240 3884808 - 3885824 + | transport system permease protein Shewana3_3241 3885836 - 3886654 + | hemin importer ATP-binding subunit Shewana3_3242 3886737 - 3887078 + | hypothetical protein Shewana3_3243 3887440 - 3887075 - | hypothetical protein Shewana3_3244 3889027 - 3887552 - | FAD dependent oxidoreductase TERM 4745 3888345 - 3888320 - G 70 -11.1 -2.64099 | opp_overlap 3888320 3888338, overlap 3888319 TGCGGGCACCACAAT CGCCGCACGAA CATT TCCTTGCGGCG TCTGTAATTGAGTAA Shewana3_3245 3889359 - 3889024 - | hypothetical protein Shewana3_3246 3889558 - 3890109 + | hypothetical protein Shewana3_3247 3890234 - 3891091 + | extracellular solute-binding protein Shewana3_3248 3891543 - 3891094 - | UspA domain-containing protein TERM 4746 3891656 - 3891675 + r 74 -9.2 -3.32294 | opp_overlap 3891658, overlap 3891658 3891673 TAGCAATCAAAAACA AAGGGCGC CTTA GCGCCCTC TTATCAGAGCTTTAA TERM 4747 3891658 - 3891673 + r 86 -11.8 -3.22668 | opp_overlap 3891658, overlap 3891656 GCAATCAAAAACAAA GGGCGC CTTA GCGCCC TCTTATCAGAGCTTT TERM 4748 3891673 - 3891658 - R 100 -11.8 -4.96773 | opp_overlap 3891658 3891656 GCAATCAAAAACAAA GGGCGC CTTA GCGCCC TCTTATCAGAGCTTT Shewana3_3249 3892125 - 3891694 - | UspA domain-containing protein Shewana3_3250 3892543 - 3892145 - | hypothetical protein TERM 4749 3892661 - 3892684 + H 100 -10.4 -4.82901 | opp_overlap 3892665, overlap 3892665 CGCTGTTCGCTAGGA TAAACCGACT AATC AGTCGGTTTG TTTTTATACACCACA TERM 4750 3892680 - 3892665 - H 80 -9 -3.96148 | opp_overlap 3892661 3892665 GTTCGCTAGGATAAA CCGACT AATC AGTCGG TTTGTTTTTATACAC TERM 4751 3892665 - 3892680 + H 100 -9 -4.96501 | opp_overlap 3892665, overlap 3892661 GTTCGCTAGGATAAA CCGACT AATC AGTCGG TTTGTTTTTATACAC Shewana3_3251 3892741 - 3894165 + | aldehyde dehydrogenase TERM 4752 3894689 - 3894699 + G 78 -2.4 -5.28778 | opp_overlap 3894669 3894670, overlap 3894669 3894669 ACGGCCAATACTTGG CCGC CAC GCGC TTTTTTATCGATAAT Shewana3_3252 3894187 - 3894789 + | TetR family transcriptional regulator TERM 4753 3894801 - 3894826 + T 86 -11.9 -2.98545 | opp_overlap 3894801, overlap 3894798 TTAACCATAAAAAAA CCGAGCCAG ACATGTCG CTGGCTCGG TGCTTGTTATCGCAA TERM 4754 3894826 - 3894801 - T 100 -11.9 -5.71983 | gap 1, opp_overlap 3894801 3894798 TTAACCATAAAAAAA CCGAGCCAGACA TGT CG-CTGGCTCGG TGCTTGTTATCGCAA Shewana3_3253 3895654 - 3894848 - | curli production assembly/transport component CsgG Shewana3_3254 3896049 - 3895654 - | curli production assembly/transport component CsgF, putative Shewana3_3255 3896470 - 3896060 - | curli production assembly/transport component CsgE, putative Shewana3_3256 3898358 - 3896703 - | ATPase domain-containing protein TERM 4755 3897584 - 3897569 - G 74 -4.7 -4.8048 | CTTTGATATGAAAAA GATGC CGCGCC GCATC GTTGGCATACATGAG Shewana3_3257 3899835 - 3898399 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 4756 3898758 - 3898794 + g 70 -8 -3.73775 | gap 2, overlap 3898766 GCTCCCGCACATTGC CCGGC-CAGC-GGTGCTG CAA CAGGGCTTGCTGCGCCGG TTTACTCAGGCTAAA TERM 4757 3899109 - 3899091 - G 72 -8.1 -3.94812 | gap 1, opp_overlap 3899095, overlap 3899089 TTTCATCCAAAAACA GCGTGCCG CCAT CGGC-CGC CTCAAAGCGACCAAT TERM 4758 3899214 - 3899226 + g 73 -3.4 -5.04249 | AGGCGCCCACATTCA CCTT GATAA AAGG TTTGTTTTTTAAGGG TERM 4759 3899531 - 3899541 + g 70 -8.2 -3.6682 | opp_overlap 3899529 TTACCCATATAATCG GCGG CGC CCGC TTTCACTAGCTCGAC TERM 4760 3899646 - 3899674 + g 72 -9.5 -3.38207 | ACAACTGCCGCCCTT CTTCCCCCGAGGT GGT ATCGCGGGTGAAG TTCATATCTTGGATA TERM 4761 3899912 - 3899885 - R 100 -9.3 -5.4593 | opp_overlap 3899885 TTAAAATAACAAAAA GTGCAATAACA TCCTAC TGTTATCGCAC TTAATGCCCTTCAAC Shewana3_3258 3901131 - 3899932 - | hypothetical protein Shewana3_3259 3902447 - 3901143 - | hypothetical protein Shewana3_3260 3903196 - 3902456 - | ABC transporter related TERM 4762 3902727 - 3902715 - G 76 -6.9 -4.46212 | TCGGCGAGCAGAAAA CGAGG CTC CCCCG CTAAAGCGCGAGCAA Shewana3_3261 3903663 - 3903292 - | hypothetical protein Shewana3_3262 3904925 - 3903663 - | RND family efflux transporter MFP subunit TERM 4763 3905083 - 3905070 - H 79 -6.7 -4.71234 | opp_overlap 3905072, overlap 3905072 AAATTCAAGATAAAA GTGTC CGCG GACAC CGAGGGCTTTATTAA TERM 4764 3905072 - 3905090 + H 76 -8 -4.16284 | opp_overlap 3905070 3905072 ATTCAAGATAAAAGT GTCCGCGG ACA CCGAGGGC TTTATTAAAAAGTGT TERM 4765 3905128 - 3905141 + H 74 -8.1 -3.91897 | TTTTCGCGAAAGTGT CCGCT GAAA AGCGG TTTGTGAATAAAGGA Shewana3_3263 3905284 - 3906327 + | dihydroorotase TERM 4766 3906394 - 3906409 + F 100 -10.4 -5.24531 | opp_overlap 3906394 TTGAAACCGTTAAGA GTCGCC TTAA GGCGAC TTTTTTATAACCAGT TERM 4767 3906409 - 3906394 - f 77 -10.4 -3.0806 | opp_overlap 3906394 TTGAAACCGTTAAGA GTCGCC TTAA GGCGAC TTTTTTATAACCAGT TERM 4768 3906976 - 3906965 - g 72 -3.6 -4.84017 | AACGGCCCACAAAAA GGCA TTCC CGCC ATTAATCAGTGGCTT TERM 4769 3907016 - 3907000 - g 100 -8.7 -5.06414 | overlap 3906982 GTGGCTTAAGAAAAA GCTCACC GAT GATGAGC AGCTGGCACAGACCT Shewana3_3264 3906464 - 3907510 + | hypothetical protein Shewana3_3265 3907665 - 3908021 + | hypothetical protein TERM 4770 3908246 - 3908227 - f 78 -9.2 -3.67517 | opp_overlap 3908225 3908227 TAGCAACAGCCTAAA GGGCGATG CACT CAACGCCC TCTTCACTTTACCCA TERM 4771 3908227 - 3908246 + F 72 -9.2 -3.20349 | opp_overlap 3908227, overlap 3908225 TAGCAACAGCCTAAA GGGCGATG CACT CAACGCCC TCTTCACTTTACCCA Shewana3_3266 3908278 - 3908571 + | hypothetical protein TERM 4772 3908934 - 3908902 - T 95 -12.9 -3.03771 | overlap 3908905 CTACAGGCGCGAACA TAACTGTCGCTAGAA TAA TTCCAGCAACAGTCA GCATAAATCCAAAAA TERM 4773 3908931 - 3908905 - T 100 -12.4 -3.66288 | overlap 3908902 CAGGCGCGAACATAA CTGTCGCTAGAA TAA TTCCAGCAACAG TCAGCATAAATCCAA TERM 4774 3909345 - 3909307 - T 89 -11.9 -3.34005 | gap 1, opp_overlap 3909313 3909315, overlap 3909298 3909315 AATGAAGGCTCATAA GCCCAAGAGGGGCAAATA GGAT TATTTGCCCCTCT-AGTC TGACACTGTGGCGAA TERM 4775 3909313 - 3909340 + T 100 -17.2 -2.63301 | opp_overlap 3909307 3909315, overlap 3909315 GGCTCATAAGCCCAA GAGGGGCAAATA GGAT TATTTGCCCCTC TAGTCTGACACTGTG TERM 4776 3909338 - 3909315 - T 100 -14 -3.11291 | opp_overlap 3909315 3909313, overlap 3909307 CTCATAAGCCCAAGA GGGGCAAATA GGAT TATTTGCCCC TCTAGTCTGACACTG TERM 4777 3909315 - 3909338 + T 95 -14 -2.85668 | opp_overlap 3909307 3909315, overlap 3909313 CTCATAAGCCCAAGA GGGGCAAATA GGAT TATTTGCCCC TCTAGTCTGACACTG TERM 4778 3909402 - 3909392 - T 70 -5.4 -4.48713 | CGCAGCAAGAACAAA GATG ATA CATC GCCGTTATTGAGTGC Shewana3_3267 3909631 - 3909407 - | hypothetical protein Shewana3_3268 3910290 - 3910168 - | hypothetical protein Shewana3_3269 3910727 - 3910344 - | hypothetical protein Shewana3_3270 3911167 - 3910772 - | GCN5-related N-acetyltransferase Shewana3_3271 3911732 - 3911178 - | cell division protein ZipA Shewana3_3272 3912628 - 3911804 - | periplasmic binding protein TERM 4779 3912422 - 3912438 + g 89 -2.1 -5.77853 | opp_overlap 3912420 3912422 CTGGATCCCATAATA TCCACCG ATA CTGGGGA TTTTTTTTGCCGCTT Shewana3_3273 3913681 - 3912644 - | hypothetical protein TERM 4780 3913456 - 3913466 + g 76 -5.4 -4.82901 | CTATGTAGCGGTAAC CATC CAT GATG TTTTTGTGCAGCCCA TERM 4781 3913750 - 3913728 - R 75 -3.4 -5.1356 | CGCTATCAATAAAAA CGCTAACG ATAGAGA CGCTAACG GATTTTACCGAGGAA Shewana3_3274 3914465 - 3913830 - | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 4782 3914427 - 3914444 + g 73 -3.3 -4.96646 | overlap 3914429 GGCCTTGATTTGCGC TTGCTCG TTGT CGAGCTG TTTTTCGTTCTCTAC TERM 4783 3914429 - 3914442 + g 74 -8.1 -4.09586 | overlap 3914427 CCTTGATTTGCGCTT GCTCG TTGT CGAGC TGTTTTTCGTTCTCT Shewana3_3275 3916119 - 3914494 - | cobyric acid synthase Shewana3_3276 3916809 - 3916207 - | adenosylcobinamide kinase TERM 4784 3916503 - 3916460 - G 76 -8 -4.18401 | opp_overlap 3916459 3916491, overlap 3916461 CGAGAGAGGGCAAAA TCCAAGGCAAAGTCCGATTC CGTT GAAGCGGGCTCGGCCTCGGG GCTTTGTGCAAGTAG TERM 4785 3916502 - 3916461 - G 74 -11.5 -3.10558 | opp_overlap 3916459 3916491, overlap 3916460 GAGAGAGGGCAAAAT CCAAGGCAAAGTCCGATTC CGTT GAAGCGGGCTCGGCCTCGG GGCTTTGTGCAAGTA TERM 4786 3916791 - 3916753 - G 79 -13.1 -3.14683 | gap 1, opp_overlap 3916759 ATACTGGCGCACTAA GGCTTCGC-CGTAGCGGC TCTT ACCGCTACGCGCGCCGCC TAGCACTAAATGGAT cobS 3917594 - 3916806 - | cobalamin synthase cobT 3918743 - 3917691 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Shewana3_3279 3920051 - 3918906 - | transport system permease protein TERM 4787 3919377 - 3919365 - G 74 -7.7 -4.2142 | AAGACTCCAAAACAA TACCG ATG CGGTA GCCTGCGGGCTGGCA Shewana3_3280 3921028 - 3920048 - | ABC transporter related TERM 4788 3920766 - 3920756 - G 70 -8.2 -3.71378 | opp_overlap 3920764 CACTTTACAGGCAAA CGCC TTG GGCG ACAGCTCGCTAATAT Shewana3_3281 3922223 - 3921501 - | phosphoglycerate mutase TERM 4789 3925466 - 3925454 - g 74 -4.8 -4.75372 | opp_overlap 3925462, overlap 3925444 ATCATCGATGAAAAA TGGC TCACC GCCA AGGGCGTGATTGGGC metH 3922433 - 3926167 + | B12-dependent methionine synthase TERM 4790 3926268 - 3926242 - T 100 -10.2 -4.29493 | opp_overlap 3926243, overlap 3926243 3926246 CAGTAAATAGATAAA GTAAGGGGCTAA ATC CTAGCCCCTTAT TTTTTGGTTTAATTT TERM 4791 3926267 - 3926243 - T 100 -13.7 -3.16611 | opp_overlap 3926243, overlap 3926242 3926246 AGTAAATAGATAAAG TAAGGGGCTAA ATC CTAGCCCCTTA TTTTTTGGTTTAATT TERM 4792 3926243 - 3926267 + T 100 -13 -5.41359 | opp_overlap 3926243 3926242 3926246 AGTAAATAGATAAAG TAAGGGGCTA AATCC TAGCCCCTTA TTTTTTGGTTTAATT TERM 4793 3926264 - 3926246 - T 84 -11 -3.69992 | opp_overlap 3926243, overlap 3926243 3926242 AAATAGATAAAGTAA GGGGCTAA ATC CTAGCCCC TTATTTTTTGGTTTA TERM 4794 3926336 - 3926314 - T 72 -7.6 -3.79203 | AGATAAAAGCTTAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAGGAGGACT Shewana3_3283 3927225 - 3926707 - | hypothetical protein Shewana3_3284 3927902 - 3927222 - | hypothetical protein Shewana3_3285 3928653 - 3927910 - | hypothetical protein TERM 4795 3929499 - 3929487 - R 83 -9.1 -4.1964 | opp_overlap 3929485 TGTAACAGTGCAAAA GCCTG CGG CAGGC AATTAGCTACACTGA TERM 4796 3930005 - 3929993 - R 75 -9.1 -3.71883 | opp_overlap 3929991, overlap 3929986 TAAGAGAATGCCAAA GCCTG CGG CAGGC AATGAGTTACAAAAT Shewana3_3286 3931141 - 3930179 - | dienelactone hydrolase TERM 4797 3930850 - 3930810 - G 73 -10.4 -3.29511 | overlap 3930811 TCCAGGGTCTTAGAA TCGCCAGCCTCTTTGCCG GGAAT CAGCATAGAAGCTGGCAT CACTAAATAACCGCG TERM 4798 3930849 - 3930811 - G 78 -13.9 -2.57564 | overlap 3930810 CCAGGGTCTTAGAAT CGCCAGCCTCTTTGCCG GGAAT CAGCATAGAAGCTGGCA TCACTAAATAACCGC TERM 4799 3931325 - 3931335 + H 78 -2.4 -5.43414 | GCATGAGCTTTTTAT TCCC TAG GGGC TTTTTTGTGTATAAT Shewana3_3287 3931413 - 3933701 + | hypothetical protein TERM 4800 3934183 - 3934168 - g 73 -5.4 -4.65078 | overlap 3934179 ATATCCGCAACAAAA CCACCT ATAA AGATGG CCAAGCCGTCGGTAT TERM 4801 3934471 - 3934483 + G 74 -7.7 -4.18506 | AGAATTATAAGGTCG GTGAG CAG CTCAC TTATTTTGAAAATGG Shewana3_3288 3933711 - 3935444 + | MORN repeat-containing protein Shewana3_3289 3935604 - 3937916 + | MORN repeat-containing protein Shewana3_3290 3938127 - 3939224 + | sodium/calcium exchanger membrane region TERM 4802 3939257 - 3939275 + T 100 -11.7 -5.08601 | opp_overlap 3939254 TAGGAAAACCCATTA GCCGAGG ATTTA CCTCGGC TTTTTATTGGCCTGC Shewana3_3291 3940843 - 3939266 - | rhomboid family protein TERM 4803 3940418 - 3940429 + g 84 -4.4 -5.29782 | CTCAATATTACGCTG CACA CCTA TGTG TTTTTTATCAATATA TERM 4804 3940910 - 3940863 - R 84 -6.2 -4.96848 | opp_overlap 3940896 3940897 3940899, overlap 3940864 3940896 TCCTTGAGAGAAAAA TCCCGCCAATGATACGGCGTAT CGCC ACACAACGCACCCTTAGCGGGG TGATTGCTTGGTTTT TERM 4805 3940909 - 3940864 - R 80 -9.7 -3.57627 | opp_overlap 3940896 3940897 3940899, overlap 3940863 3940896 CCTTGAGAGAAAAAT CCCGCCAATGATACGGCGTAT CGCC ACACAACGCACCCTTAGCGGG GTGATTGCTTGGTTT TERM 4806 3940980 - 3940998 + r 100 -13.2 -5.10461 | opp_overlap 3940980 CCATACCAACAAAAA GGCCAGAA CGA TTCTGGCC TTTTTGTTGAGTGGA TERM 4807 3940998 - 3940980 - R 100 -13.2 -5.16841 | opp_overlap 3940980 CCATACCAACAAAAA GGCCAGAA CGA TTCTGGCC TTTTTGTTGAGTGGA pbpG 3941988 - 3941032 - | D-alanyl-D-alanine endopeptidase TERM 4808 3941871 - 3941885 + g 73 -3.4 -4.91109 | overlap 3941871 3941872 TTACAGGGGCTTTTT TCGCCG TGG CGGTGC TTTTTGTAGTGACAG Shewana3_3293 3943205 - 3942279 - | LysR family transcriptional regulator TERM 4809 3943275 - 3943251 - H 82 -3 -5.52807 | opp_overlap 3943251, overlap 3943238 AATAATAAACAAAAA TTATCAAAAT AAGAA AATTTGATAA TTTTTAATTGTTAAT TERM 4810 3943251 - 3943275 + H 71 -3 -5.00339 | opp_overlap 3943251 3943238 AATAATAAACAAAAA TTATCAAAAT AAGAA AATTTGATAA TTTTTAATTGTTAAT TERM 4811 3943735 - 3943717 - g 73 -3 -5.01732 | AACTTGCCGAAAAAA TTGTCGCC GCT GGCGGTAA GAAACGTATGAAGGA Shewana3_3294 3943374 - 3943877 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 4812 3944060 - 3944046 - f 72 -7.2 -3.98484 | AATTTAAGCTACAAA TCAATG GCC CATTGA TACAACTTAAGTTAT TERM 4813 3944225 - 3944241 + F 89 -6.5 -5.38549 | overlap 3944217 3944226 AACGAGTTGATGTCT ACAGTGG ACA CCACTGG TTTTTATTATTTCAA TERM 4814 3944226 - 3944240 + F 84 -10 -3.81503 | overlap 3944217 3944225 ACGAGTTGATGTCTA CAGTGG ACA CCACTG GTTTTTATTATTTCA TERM 4815 3944566 - 3944534 - g 74 -7.2 -4.15222 | gap 1, opp_overlap 3944534 3944533 AGCCGGGTGAACAAA TGTTGTCGACTGAAT CTGA ATTCAG-CGAAAACA ATTTAACCGTAAAAA Shewana3_3295 3944269 - 3944712 + | hypothetical protein TERM 4816 3944732 - 3944767 + T 100 -20.8 -3.07816 | opp_overlap 3944742, overlap 3944735 3944742 TATTTATTCTTTGGC CAATAAAAAACCAGCC ATTA GGCTGGTTTTTTATTG TTCGCTAAATGCAGG TERM 4817 3944735 - 3944764 + T 100 -16.7 -3.68569 | opp_overlap 3944742, overlap 3944732 3944742 TTATTCTTTGGCCAA TAAAAAACCAGCC ATTA GGCTGGTTTTTTA TTGTTCGCTAAATGC TERM 4818 3944742 - 3944757 + T 100 -10.4 -5.64873 | opp_overlap 3944742, overlap 3944735 3944732 TTGGCCAATAAAAAA CCAGCC ATTA GGCTGG TTTTTTATTGTTCGC TERM 4819 3944757 - 3944742 - T 100 -10.4 -5.4505 | opp_overlap 3944742 3944735 3944732 TTGGCCAATAAAAAA CCAGCC ATTA GGCTGG TTTTTTATTGTTCGC lysS 3946317 - 3944815 - | lysyl-tRNA synthetase TERM 4820 3946118 - 3946130 + g 77 -9.1 -4.09685 | TTTGCCATGATACGG CCAGC GAT GCTGG TTTTAAAACCTAAGG Shewana3_3297 3947405 - 3946347 - | peptide chain release factor 2 TERM 4821 3947612 - 3947600 - H 79 -6.9 -4.63527 | overlap 3947603 TTATCAGCCTAAAAA GCACC GCT GGCGC CAGCAGATTAACAGA TERM 4822 3948215 - 3948200 - g 74 -11.8 -2.73635 | overlap 3948199 TAAAGCCTGTGAAAC GCCCGC CGAA GCGGGC TTAAAAGTCATCACA TERM 4823 3949028 - 3948987 - g 100 -14.3 -5.01732 | overlap 3948989 AAGTTGGGCAAAAAA GTCGCCGTCATTGGCGGCG GCAA CACCGCCATCGACTGCGCC CGCACCGCGGTGCGT TERM 4824 3949026 - 3948989 - g 88 -15.5 -2.75708 | overlap 3948987 GTTGGGCAAAAAAGT CGCCGTCATTGGCGGCG GCAA CACCGCCATCGACTGCG CCCGCACCGCGGTGC TERM 4825 3949490 - 3949518 + G 77 -11.7 -3.17212 | overlap 3949492 TGCCGTAGCCGCCAT TGGCGATGGCCGT AAA GCGGCAATCGCTA TTGATAAGATGCTAA TERM 4826 3949492 - 3949516 + G 77 -12.1 -3.1478 | overlap 3949490 CCGTAGCCGCCATTG GCGATGGCCGT AAA GCGGCAATCGC TATTGATAAGATGCT TERM 4827 3950060 - 3950072 + G 73 -9.1 -3.72893 | opp_overlap 3950047 3950038 3950045 CATGGAGCGCCGCGC GCCGA GAG TCGGC TTTAGTGCGAGCATG TERM 4828 3950420 - 3950393 - g 73 -5.5 -4.60041 | overlap 3950394 ACTGATCCGTAAAAA CGGCGAGCTAC AACCGA GTAGCTGGCCC GAAGCCATCGCCTAT TERM 4829 3950486 - 3950469 - g 95 -5.5 -5.58522 | overlap 3950472 3950481 GAGATAAAACAAAAA GATGGCA GCAA TGCCCTC GCCAGCCTCGCCTCG TERM 4830 3952127 - 3952110 - g 70 -8.3 -3.72576 | opp_overlap 3952109 3952107 3952112 GCCTTTGTGACTAAA CGCGCCC AGGC GGGCGTG CTGTTCCTGCCGTTC Shewana3_3298 3947973 - 3952271 + | formate dehydrogenase, alpha subunit TERM 4831 3952325 - 3952343 + T 100 -14.6 -4.8622 | opp_overlap 3952325 GCTGGATATAAAAAA CGGGAGAC AAT GTCTCCCG TTTTTCATTCGCGAA TERM 4832 3952343 - 3952325 - T 100 -14.6 -5.36441 | opp_overlap 3952325 GCTGGATATAAAAAA CGGGAGAC AAT GTCTCCCG TTTTTCATTCGCGAA Shewana3_3299 3954050 - 3952386 - | methyl-accepting chemotaxis sensory transducer TERM 4833 3953686 - 3953698 + g 78 -4.1 -5.10163 | TTAGTACCGCGAGGG TCGGT CAT ATCGA TTTTGTTTTGCCCTT Shewana3_3300 3955358 - 3954186 - | chromate transporter TERM 4834 3955472 - 3955450 - R 100 -13.5 -5.76237 | opp_overlap 3955446 CATAGAAACAAAAAA GCCGGCAAA ATCCA TTTGCCGGC ATCCTAAATTCAGGA Shewana3_3301 3960531 - 3955522 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 4835 3956965 - 3956977 + g 82 -7.7 -4.74504 | GTTCGGTTGAACGCC GCTGA TGG TCAGC TTTTTACCTTCAACT TERM 4836 3957096 - 3957082 - G 70 -9.2 -3.59979 | TGCTTCGATGCTAAA GGCGCG GTC CGCACC CGAGTCGTTTGGCTG TERM 4837 3959208 - 3959220 + g 74 -4.8 -4.82819 | opp_overlap 3959208 CTGTTGAACCACCAA CTGG ATTTA CCAG TTTTGTTGTAATATC Shewana3_3302 3960558 - 3960950 + | ISPsy11, transposase OrfA TERM 4838 3960959 - 3960942 - f 87 -4.9 -5.4505 | gap 1, overlap 3960943 3960944 CGCTCCAAGAAAAAA CGGCCATA GGT TATGGC-G TCACCCAATGCTGTC TERM 4839 3961288 - 3961322 + G 74 -11.5 -3.17797 | opp_overlap 3961283 3961293, overlap 3961290 TGAGCAGCAAGTGGA CATCAGCCGCTCAGA ACAAG TCTGGGTGGCTGATA TTACCTATCTGTCAC TERM 4840 3961290 - 3961320 + G 86 -14.1 -3.14839 | opp_overlap 3961283 3961293, overlap 3961288 AGCAGCAAGTGGACA TCAGCCGCTCAGA ACAAG TCTGGGTGGCTGA TATTACCTATCTGTC TERM 4841 3961773 - 3961741 - g 100 -16.5 -3.63744 | opp_overlap 3961746, overlap 3961746 TTTGGCCTTAAAATA CAAAACGCCCGATGA GGT TCATCGAGCGTTTTA GGTGGAAATAAGTGT TERM 4842 3961768 - 3961746 - g 100 -14.2 -4.89567 | opp_overlap 3961746, overlap 3961741 CCTTAAAATACAAAA CGCCCGATGA GGT TCATCGAGCG TTTTAGGTGGAAATA TERM 4843 3961746 - 3961768 + G 95 -12 -4.18494 | opp_overlap 3961746 3961741 CCTTAAAATACAAAA CGCCCGATGA GGT TCATCGAGCG TTTTAGGTGGAAATA Shewana3_3303 3961055 - 3961774 + | integrase catalytic subunit TERM 4844 3962196 - 3962227 + T 77 -4.6 -4.96848 | gap 1, overlap 3962196 3962192 GGCCAATCCCACAGT GTTACATTGTGTAAC TCA GTTTCA-AATGTGAC TTTTTGTATCGAAAA TERM 4845 3962398 - 3962377 - T 100 -14.5 -5.8901 | opp_overlap 3962373 AGACAAAACAAAAAA GCCGGCAAA TCCC TTTGCCGGC ATCCTAAATTCAGGA Shewana3_3304 3967569 - 3962449 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 4846 3964840 - 3964858 + g 73 -3.1 -5.00846 | GTGAGCCTTAGCATT CAGCATG GAAGG CATACTG TTTTTGTCGTATTTG TERM 4847 3967338 - 3967367 + g 80 -13.7 -2.974 | opp_overlap 3967347, overlap 3967336 CACCCGTTAACCCCT CCTCGTAAACGAA TTTG TTCGTTTGCGGGG TAATTTGCATGTTAA Shewana3_3305 3967862 - 3968704 + | MltA-interacting MipA family protein Shewana3_3306 3968694 - 3969113 + | hypothetical protein TERM 4848 3969624 - 3969655 + G 78 -3.6 -5.06414 | gap 1 TGCTGTGGATCTTCG CTCTGCACGCCGGCA AAG TGCTGTCGCG-GGAG TTTTTGTTCGAGCAA Shewana3_3307 3969110 - 3969832 + | two component transcriptional regulator TERM 4849 3970778 - 3970758 - g 71 -7.5 -4.0896 | AAACCTTGTCCAAAA TGCTATGCG TTT CGCCCAGCA TGACATCCATGTCCA Shewana3_3308 3969838 - 3971067 + | ATPase domain-containing protein rumB 3972236 - 3971082 - | 23S rRNA methyluridine methyltransferase TERM 4850 3971237 - 3971225 - G 70 -4.7 -4.66938 | overlap 3971226 AGCTGGAATACAAAA TCGCC TTA GGCGC AAACTCACTTAAGGA Shewana3_3310 3973605 - 3972415 - | FAD dependent oxidoreductase Shewana3_3311 3974168 - 3973671 - | MarR family transcriptional regulator Shewana3_3312 3974298 - 3974723 + | OsmC family protein TERM 4851 3974750 - 3974777 + F 100 -15.8 -3.48395 | opp_overlap 3974724 3974757, overlap 3974757 AACAGTCACTATCGT CTAAAAAGCACC TCAG GGTGCTTTTTAG TTATCTGCCGCGAAT TERM 4852 3974770 - 3974757 - f 86 -8.1 -4.58663 | opp_overlap 3974750 3974757, overlap 3974724 ACTATCGTCTAAAAA GCACC TCAG GGTGC TTTTTAGTTATCTGC TERM 4853 3974757 - 3974770 + F 95 -8.1 -4.96646 | opp_overlap 3974724 3974757, overlap 3974750 ACTATCGTCTAAAAA GCACC TCAG GGTGC TTTTTAGTTATCTGC TERM 4854 3975883 - 3975870 - g 72 -8.1 -3.86346 | TTACTTCTTCACAAA GGGTG ATGT CACCC TGTCAATGTCGGCGG Shewana3_3313 3974950 - 3976374 + | hypothetical protein Shewana3_3314 3976473 - 3976658 + | hypothetical protein TERM 4855 3976715 - 3976695 - T 100 -12.5 -5.29782 | opp_overlap 3976695 GAGATTGATAAAAAA GCGCCCCGA ATA TTGGGGCGC TTTTTTGTTTAAGGC TERM 4856 3976695 - 3976715 + T 100 -14.7 -5.63517 | opp_overlap 3976695 GAGATTGATAAAAAA GCGCCCCGA ATA TTGGGGCGC TTTTTTGTTTAAGGC Shewana3_3315 3977079 - 3976789 - | hypothetical protein Shewana3_3316 3977664 - 3977140 - | methyltransferase type 12 Shewana3_3317 3978071 - 3977661 - | hypothetical protein TERM 4857 3978616 - 3978600 - g 80 -4.4 -5.18561 | GAAAGATTCAAAAAA CAGCAC TAGCC ATGCTG ATCTCTGGCGCAATG TERM 4858 3979619 - 3979603 - g 71 -5.1 -4.56597 | overlap 3979606 TGGTTTTGCGAAAAA CAACGAC CGC GTCGCTA AGTACGATCCTAAGT TERM 4859 3979616 - 3979606 - g 74 -6.8 -4.40561 | overlap 3979603 TTTTGCGAAAAACAA CGAC CGC GTCG CTAAGTACGATCCTA TERM 4860 3979805 - 3979828 + G 72 -8.2 -3.86015 | gap 1 GGTAACGGTGCTATC GTGGTTAACCG TGA CGGT-AACCGC TTTATGAACGAAATC Shewana3_3318 3978575 - 3980365 + | flavocytochrome c TERM 4861 3980458 - 3980477 + F 100 -10.7 -6.04378 | opp_overlap 3980458 AGCTTATCAGTACAA GCGAGCC GTCAGG GGCTCGC TTTTTTTTATGATTT TERM 4862 3980477 - 3980458 - f 83 -10.7 -3.44229 | opp_overlap 3980458 AGCTTATCAGTACAA GCGAGCC GTCAGG GGCTCGC TTTTTTTTATGATTT Shewana3_3319 3980612 - 3981601 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 4863 3981654 - 3981629 - f 100 -16.3 -3.57462 | overlap 3981616 3981648 TACCTGACTGCTAAA GTGAGGCTTCA ACAT TGAAGCCTCAC AGAGGAAACTAAATA Shewana3_3320 3981669 - 3982406 + | dienelactone hydrolase TERM 4864 3982461 - 3982426 - T 100 -12.8 -5.74086 | opp_overlap 3982431 3982456 AAACGAAAGAAAAAA GCCAACTCATTAATCA ATCG TAATTAATGGGTTGGC TTAGCCAAATGCTTA Shewana3_3321 3983043 - 3982516 - | hypothetical protein TERM 4865 3983293 - 3983304 + r 78 -5.8 -4.87389 | opp_overlap 3983289 AAAGGAGAATAGTTA CTCG AGGT CGAG TTTCTTTTTGCCATC Shewana3_3322 3983835 - 3983290 - | hypothetical protein TERM 4866 3984495 - 3984478 - g 71 -6.3 -4.28375 | gap 1 GGAACACAGCCAAAA TC-GCGAG TTG CTCGCCGA TCTGCAGCACCATTT Shewana3_3323 3983936 - 3984679 + | spermine synthase Shewana3_3324 3984769 - 3986304 + | peptidase M17, leucyl aminopeptidase domain-containing protein TERM 4867 3986360 - 3986378 + F 100 -11.8 -5.46657 | opp_overlap 3986360 GAGAAGAGAGATTAA GGGATATC GTC GATATCCC TTTTTTATTGCCCTG TERM 4868 3986378 - 3986360 - f 89 -11.8 -3.38966 | opp_overlap 3986360 GAGAAGAGAGATTAA GGGATATC GTC GATATCCC TTTTTTATTGCCCTG TERM 4869 3986639 - 3986629 - g 71 -5.4 -4.56093 | opp_overlap 3986629 AATGGAAGCATAAAA TGAC TCA GTCA ATTATCAACAGCACA Shewana3_3325 3986628 - 3987197 + | alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen Shewana3_3326 3987431 - 3989008 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 4870 3989032 - 3989059 + T 100 -11.4 -4.4261 | opp_overlap 3989038, overlap 3989038 GATTATTCCCCTCAC GAAAAAGCCAGC TGAT GCTGGCTTTTTG TTTTAGTGTTAACAA TERM 4871 3989053 - 3989038 - T 100 -10.4 -4.72272 | opp_overlap 3989038 3989032 TCCCCTCACGAAAAA GCCAGC TGAT GCTGGC TTTTTGTTTTAGTGT TERM 4872 3989038 - 3989053 + T 100 -10.4 -5.52079 | opp_overlap 3989038, overlap 3989032 TCCCCTCACGAAAAA GCCAGC TGAT GCTGGC TTTTTGTTTTAGTGT Shewana3_3327 3989501 - 3989082 - | GCN5-related N-acetyltransferase Shewana3_3328 3989844 - 3989515 - | hypothetical protein Shewana3_3329 3991607 - 3989883 - | single-stranded-DNA-specific exonuclease RecJ TERM 4873 3991669 - 3991651 - R 100 -11 -5.29716 | opp_overlap 3991651 CTAAGATAACAAAAA GGTGAGCC TTA AGCTCACC TTTAATGGCATAAAT TERM 4874 3991651 - 3991669 + r 86 -10.3 -3.74872 | opp_overlap 3991651 CTAAGATAACAAAAA GGTGAGC CTTAA GCTCACC TTTAATGGCATAAAT Shewana3_3330 3992425 - 3991700 - | thiol:disulfide interchange protein DsbC Shewana3_3331 3993478 - 3992576 - | tyrosine recombinase XerD TERM 4875 3993519 - 3993497 - R 100 -6.3 -5.63504 | gap 1, opp_overlap 3993497 AACTCCATAAAAAAA CGGCGCA-CT CTAA AGATACGCCG TTGATATTAACTCAA Shewana3_3332 3994963 - 3993560 - | branched-chain amino acid transport system II carrier protein TERM 4876 3994228 - 3994218 - G 76 -3.2 -5.07523 | GACACATAAACAAAA GCAA GCC CTGC CGCCGCGATAAAGGC TERM 4877 3995713 - 3995703 - g 86 -8.2 -4.72986 | GAGTTGGAGGAAAAA GCCG CCG CGGC GTGCCAATACAATAT Shewana3_3333 3995499 - 3996224 + | methyltransferase small TERM 4878 3996237 - 3996259 + T 72 -7.8 -3.79687 | opp_overlap 3996237 3996240, overlap 3996235 TAATTCGAGTAGCAA TAAGGCTC GCATCAA GAGCCTTA TCTTTTGTAGCGAAT Shewana3_3334 3997276 - 3996281 - | response regulator receiver modulated metal dependent phosphohydrolase Shewana3_3335 4000647 - 3997279 - | multi-sensor hybrid histidine kinase TERM 4879 3997838 - 3997824 - G 74 -10 -3.52113 | overlap 3997822 ATTCTTTGATAAATA GGGGTT TAG AACCCC ACAATTTCACGCCCT TERM 4880 3999005 - 3999042 + g 71 -10.5 -3.05054 | gap 1, opp_overlap 3999013, overlap 3999004 TCGTGGCTCATATTG GCCAAGAAGGCCGCACGC GCC GC-TGCCGCCTGCTCGGC ATTATTCTTTGCCGT TERM 4881 3999654 - 3999668 + g 80 -2.1 -5.47399 | gap 1 CGTGGTGCGGCCGAA TCG-CC TCAG GGACGA TTTTTTTCACATTCG Shewana3_3336 4001048 - 4002307 + | ATP-dependent RNA helicase SrmB TERM 4882 4002324 - 4002338 + F 100 -11.4 -5.60993 | opp_overlap 4002324 ACAGCTACGAGAAAA GCCGCA TAA TGCGGC TTTTTTTATGGGCGG TERM 4883 4002338 - 4002324 - f 100 -11.4 -4.48072 | opp_overlap 4002324 ACAGCTACGAGAAAA GCCGCA TAA TGCGGC TTTTTTTATGGGCGG TERM 4884 4002936 - 4002914 - g 70 -9.8 -3.19192 | GCCGATTTAATGCAA GCCGAAGCCA CCT TGGCTCAGGC AACCGCGGCACTGAA TERM 4885 4002972 - 4002960 - g 83 -9.1 -4.33621 | CACTGAATGAAGAAA TCGCC CGT GGCGA AGTCGCTAAAATCGA Shewana3_3337 4002575 - 4003792 + | RND family efflux transporter MFP subunit TERM 4886 4004097 - 4004041 - g 76 -3.1 -5.16237 | gap 3, overlap 4004062 4004094 AACGGCATTAAAAAA GTCA-CTTCG-GTT-GCCAGTGAAGGCG TCGG CGCCATCACGGTCGAAGTCGAAGATGAC TACGACGTGCAAACC TERM 4887 4005102 - 4005084 - g 71 -7.4 -4.07568 | opp_overlap 4005077 CCGCGGCGCGCAAAA GGTGGC TATGCCC GCCACC TTCGGGGTGTTAACC TERM 4888 4005269 - 4005294 + G 70 -8.3 -3.794 | gap 1, opp_overlap 4005273 4005274, overlap 4005274 4005274 CCCACATGAAGTTTA GAAAGCCG-GGG GAA CCCACGGGTTTC TTTGGTCGCTTCAAG TERM 4889 4006197 - 4006183 - g 73 -5.6 -4.66833 | GCTGAAGTCGAAAAA GGCGAA TCC TACGCC TCAATCACCCGTGTC TERM 4890 4006364 - 4006334 - g 71 -6.8 -4.17023 | CCAAGTATCCGAAAA TCCAAACCACCCTC GAT GGCGGCAGTTTGGA TGAGCAGAATGCCAT Shewana3_3338 4003792 - 4006995 + | acriflavin resistance protein TERM 4891 4007026 - 4007055 + F 100 -15.3 -2.90941 | opp_overlap 4007033, overlap 4007033 AACATCCTAACCCCA TAAAAAAGAGAGC CTAG GCTCTCTTTTTTA TCTCTAGCCTGTCCT TERM 4892 4007048 - 4007033 - f 100 -9 -5.27923 | opp_overlap 4007026 4007033 TAACCCCATAAAAAA GAGAGC CTAG GCTCTC TTTTTTATCTCTAGC TERM 4893 4007033 - 4007048 + F 100 -9 -5.4251 | opp_overlap 4007033, overlap 4007026 TAACCCCATAAAAAA GAGAGC CTAG GCTCTC TTTTTTATCTCTAGC Shewana3_3339 4007172 - 4007891 + | radical SAM domain-containing protein TERM 4894 4010191 - 4010175 - g 70 -10.1 -3.20345 | overlap 4010173 4010162 AAGCCTAGAGCAATA CCTCAGC AAT GCCGAGG TGGCGCTCAAACGGG Shewana3_3340 4008025 - 4010259 + | putative PAS/PAC sensor protein Shewana3_3341 4011640 - 4010243 - | hypothetical protein Shewana3_3342 4012255 - 4011725 - | hypothetical protein Shewana3_3343 4012991 - 4012248 - | lysine decarboxylase transcriptional regulator, CadC Shewana3_3344 4013434 - 4014258 + | cytochrome c, putative TERM 4895 4014501 - 4014485 - g 77 -11.5 -3.35992 | ACCGATGCTAACCAA GCGGCGA TTA CCGCCGC CAAGAGCTATGATAT Shewana3_3345 4014269 - 4014793 + | hypothetical protein TERM 4896 4014822 - 4014851 + T 93 -12.3 -3.19157 | opp_overlap 4014828, overlap 4014817 4014828 CCCTTCATCGTGCCC AAAAAAGGCATCC TGTG GGATGCCTTTTTA TTGCTGACATTAATG TERM 4897 4014845 - 4014828 - T 100 -11.3 -5.00884 | opp_overlap 4014817 4014828 4014822 ATCGTGCCCAAAAAA GGCATCC TGTG GGATGCC TTTTTATTGCTGACA TERM 4898 4014828 - 4014845 + T 100 -11.3 -5.1356 | opp_overlap 4014828, overlap 4014817 4014822 ATCGTGCCCAAAAAA GGCATCC TGTG GGATGCC TTTTTATTGCTGACA Shewana3_3346 4015409 - 4014861 - | hypothetical protein TERM 4899 4015269 - 4015287 + g 80 -11.8 -3.36749 | opp_overlap 4015273, overlap 4015273 GTACAGCTTAGCCAG GCAACTCA AGT TGAGTTGC TTACTGTTAAAGCTC Shewana3_3347 4016151 - 4015402 - | transcriptional regulator TERM 4900 4015604 - 4015581 - G 74 -7.4 -4.27584 | overlap 4015596 ATTGCCAAGGGAAAA TGGCACAAGC CGAA ACCTGCGCCA GAAAGTGGTCGACTA TERM 4901 4016303 - 4016291 - R 71 -4.1 -4.88293 | opp_overlap 4016295, overlap 4016295 AATGCTAAAAACAAA CAACG ATA CATTG TGTTTCATTTGTTTT Shewana3_3348 4017787 - 4016318 - | Na+/H+ antiporter TERM 4902 4018014 - 4017974 - R 100 -10.8 -4.63184 | gap 1, opp_overlap 4017981 4017988, overlap 4017976 4017977 4017981 4017988 AAGTTAGTCCAAAAA CAGCCAATAAAAAAGCACC TCTC GGTGCTTTTTTATTGA-TA TCAATCACATTGATT TERM 4903 4018013 - 4017976 - R 100 -13.7 -3.92746 | opp_overlap 4017981 4017988, overlap 4017974 4017977 4017981 4017988 GTTAGTCCAAAAACA GCCAATAAAAAAGCACC TCTC GGTGCTTTTTTATTGAT ATCAATCACATTGAT TERM 4904 4018012 - 4017977 - R 100 -17.2 -2.95166 | opp_overlap 4017981 4017988, overlap 4017976 4017974 4017981 4017988 TTAGTCCAAAAACAG CCAATAAAAAAGCACC TCTC GGTGCTTTTTTATTGA TATCAATCACATTGA TERM 4905 4017981 - 4018008 + r 100 -14.4 -3.2794 | opp_overlap 4017977 4017976 4017974 4017981 4017988, overlap 4017988 TCCAAAAACAGCCAA TAAAAAAGCACC TCTC GGTGCTTTTTTA TTGATATCAATCACA TERM 4906 4018008 - 4017981 - R 100 -14.4 -3.32832 | opp_overlap 4017981 4017988, overlap 4017977 4017976 4017974 4017988 TCCAAAAACAGCCAA TAAAAAAGCACC TCTC GGTGCTTTTTTA TTGATATCAATCACA TERM 4907 4018001 - 4017988 - R 100 -8.1 -5.49234 | opp_overlap 4017981 4017988, overlap 4017981 4017977 4017976 4017974 ACAGCCAATAAAAAA GCACC TCTC GGTGC TTTTTTATTGATATC TERM 4908 4017988 - 4018001 + r 100 -8.1 -5.5353 | opp_overlap 4017988 4017981 4017977 4017976 4017974, overlap 4017981 ACAGCCAATAAAAAA GCACC TCTC GGTGC TTTTTTATTGATATC Shewana3_3349 4018765 - 4018028 - | hypothetical protein TERM 4909 4018882 - 4018865 - R 100 -12.7 -5.24129 | opp_overlap 4018865 TTTTTGCATAAAAAA GCCCGCT AATC AGCGGGC TTTTAACAGTGCTTT TERM 4910 4018865 - 4018882 + r 100 -12.7 -4.13304 | opp_overlap 4018865 TTTTTGCATAAAAAA GCCCGCT AATC AGCGGGC TTTTAACAGTGCTTT Shewana3_3350 4019970 - 4018903 - | fructose-1,6-bisphosphate aldolase TERM 4911 4019428 - 4019442 + g 72 -10 -3.34043 | opp_overlap 4019427 4019428 ATGGGTATCAGCAAC GAAGCG TGC CGCTTC TTCTGGGCTGGTCAG pgk 4021345 - 4020170 - | phosphoglycerate kinase Shewana3_3352 4022494 - 4021478 - | erythrose 4-phosphate dehydrogenase TERM 4912 4022535 - 4022562 + r 76 -9.8 -3.33261 | opp_overlap 4022537, overlap 4022536 TACTGCATATACAAA AACGGCCTGCAA ACGA TTGCAGGCCGCA TTATACAGATTAACC TERM 4913 4022536 - 4022561 + r 93 -13.3 -2.59742 | opp_overlap 4022537, overlap 4022535 ACTGCATATACAAAA ACGGCCTGCAA ACGA TTGCAGGCCGC ATTATACAGATTAAC TERM 4914 4022560 - 4022537 - R 100 -16.8 -5.03994 | opp_overlap 4022536 4022535 CTGCATATACAAAAA CGGCCTGCAA ACGA TTGCAGGCCG CATTATACAGATTAA Shewana3_3353 4024617 - 4022623 - | transketolase TERM 4915 4024312 - 4024328 + g 79 -6.5 -4.71061 | overlap 4024313 AGGGGTGTAGCCGTA TTCTGGG TGA CCCGGAG TTTTTGAATGTAACT TERM 4916 4025584 - 4025550 - g 74 -10 -3.51597 | opp_overlap 4025561, overlap 4025559 AAGCGTCAATCAGAA GTGCGTAAAGATGGCA CTC TGCCATGGTTACGCCC AGATGCGAAAAGCCA Shewana3_3354 4025097 - 4026248 + | S-adenosylmethionine synthetase TERM 4917 4026296 - 4026283 - f 100 -9.5 -5.00616 | opp_overlap 4026283 TTCGCTTGTAAAAAA CCGCC TAAG GGCGG TTTCTTTTATGCTTA TERM 4918 4026283 - 4026296 + F 100 -9.5 -4.82863 | opp_overlap 4026283 TTCGCTTGTAAAAAA CCGCC TAAG GGCGG TTTCTTTTATGCTTA Shewana3_3355 4026380 - 4026829 + | hypothetical protein Shewana3_3356 4027177 - 4026836 - | hypothetical protein Shewana3_3357 4029002 - 4027170 - | diguanylate phosphodiesterase TERM 4919 4028690 - 4028677 - G 70 -3.1 -4.77983 | AACAGACCAATAAAA CCAAT CACT ATCGG GAAAAATAAATTTAA TERM 4920 4028828 - 4028798 - G 77 -10.4 -3.6164 | overlap 4028807 AATAGGCAGAGATAA TTGGCAAAACCGCA ATT CGCGGATCCGCCAA AATGGCGCGTACATA TERM 4921 4028819 - 4028807 - G 71 -6.9 -4.16251 | overlap 4028798 AGATAATTGGCAAAA CCGCA ATT CGCGG ATCCGCCAAAATGGC Shewana3_3358 4029850 - 4029302 - | acetyltransferase Shewana3_3359 4030024 - 4031037 + | GGDEF domain-containing protein Shewana3_3360 4031284 - 4031051 - | hypothetical protein Shewana3_3361 4031355 - 4031771 + | protein of unknown function DUF306, Meta and HslJ TERM 4922 4031783 - 4031817 + T 100 -17.5 -3.10112 | opp_overlap 4031786 4031793, overlap 4031786 4031793 ATAAGCTAGCTTCGA TAATAAAAAACCGCC TAGTT GGCGGTTTTTTATTA TTAGATGAATTAGCT TERM 4923 4031814 - 4031786 - T 100 -14.8 -3.30243 | opp_overlap 4031783 4031786 4031793, overlap 4031793 AGCTAGCTTCGATAA TAAAAAACCGCC TAGTT GGCGGTTTTTTA TTATTAGATGAATTA TERM 4924 4031786 - 4031814 + T 100 -14.8 -3.69283 | opp_overlap 4031786 4031793, overlap 4031783 4031793 AGCTAGCTTCGATAA TAAAAAACCGCC TAGTT GGCGGTTTTTTA TTATTAGATGAATTA TERM 4925 4031807 - 4031793 - T 100 -8.5 -5.55769 | opp_overlap 4031786 4031783 4031793, overlap 4031786 TTCGATAATAAAAAA CCGCC TAGTT GGCGG TTTTTTATTATTAGA TERM 4926 4031793 - 4031807 + T 100 -8.5 -5.64873 | opp_overlap 4031793 4031786, overlap 4031786 4031783 TTCGATAATAAAAAA CCGCC TAGTT GGCGG TTTTTTATTATTAGA Shewana3_3362 4033149 - 4031827 - | sodium:dicarboxylate symporter Shewana3_3363 4033607 - 4033311 - | hypothetical protein Shewana3_3364 4033828 - 4034271 + | GCN5-related N-acetyltransferase TERM 4927 4034300 - 4034280 - T 100 -13.3 -5.9003 | opp_overlap 4034280 AAAGTAATAAAAAAA GGATCGGGC ATC ACCCGATCC TTTCGTTTCAAACCG TERM 4928 4034280 - 4034300 + T 100 -12.6 -4.05788 | opp_overlap 4034280 AAAGTAATAAAAAAA GGATCGGG CATCA CCCGATCC TTTCGTTTCAAACCG Shewana3_3365 4035623 - 4034331 - | serine transporter, putative TERM 4929 4034506 - 4034520 + g 76 -5.7 -4.72272 | AGCGCCTCAATCATC CCCAA AATAC TTGGG TTTTTAATCGCAACG TERM 4930 4035917 - 4035883 - R 86 -8.7 -4.2928 | gap 1 GATAAAAACTACAAA GCCGCATTAAGTCGCA AAAA TGC-ACTAAATGCGAC CAGCTTCAATTAAGC TERM 4931 4036023 - 4036044 + r 70 -10.1 -2.52464 | opp_overlap 4036025 AGAAAGCCAATAAAA AAGGCCCAC CTAA GTGGGCCTA TCGATTAACGACAAC TERM 4932 4036042 - 4036025 - R 100 -12.7 -5.52096 | opp_overlap 4036023 AAAGCCAATAAAAAA GGCCCAC CTAA GTGGGCC TATCGATTAACGACA Shewana3_3366 4038634 - 4036067 - | methyl-accepting chemotaxis sensory transducer TERM 4933 4036567 - 4036539 - G 71 -5.9 -4.28774 | GCATCTAAGGCAAAA CCTGCGGCTTCAA GAT TCAAGGCCGCATG GGCAAGCGCCACTAA TERM 4934 4038832 - 4038810 - H 71 -4 -4.89567 | overlap 4038811 4038812 4038814 TGGCAAAATAGAAAA CCCAGAGGCG AGA CACCTCCGAC CATTTAAGCAATGAT Shewana3_3367 4038890 - 4039429 + | NTPase Shewana3_3368 4039495 - 4040517 + | MarR family transcriptional regulator TERM 4935 4040604 - 4040641 + T 80 -10.1 -3.58343 | opp_overlap 4040602 4040601 4040604 4040607, overlap 4040607 4040610 CAACGAAAGAAACCA GAATAAGGCTCCA ATTAACAAATCG TGGAGCCTTATTC TTTCGAAGTCATAGC TERM 4936 4040641 - 4040604 - T 74 -10.1 -3.22246 | opp_overlap 4040604 4040607 4040610, overlap 4040602 4040601 4040607 CAACGAAAGAAACCA GAATAAGGCTCCA ATTAACAAATCG TGGAGCCTTATTC TTTCGAAGTCATAGC TERM 4937 4040782 - 4040761 - T 70 -9.5 -2.75993 | overlap 4040760 TTATGCAGAGATAAT GTAGTCAGC AGCA ACTGACTAC GAATGATTTGACGTA Shewana3_3369 4041932 - 4040739 - | beta-lactamase TERM 4938 4041999 - 4042017 + r 73 -8.2 -3.60475 | opp_overlap 4041993 CTTATCACAGGCACA CCTTAAGT GTG ACTTGAGG TTTGGAGTGCCAGTT Shewana3_3370 4042370 - 4042053 - | hypothetical protein TERM 4939 4042700 - 4042686 - H 80 -2.8 -5.45813 | GACGAAAAAACAAAA TTGAGC CAT GTTCAA GTTAACCTGACACAG Shewana3_3371 4042959 - 4043522 + | hypothetical protein TERM 4940 4043916 - 4043964 + T 93 -12.5 -3.11291 | opp_overlap 4043921, overlap 4043921 AAAAGCCAGATAAAC AAAAATCGCGTTAGGCTCAGCTG TAC TAGCCCTGCCTAACGCGATTTTC TATTCCACTTATCGC TERM 4941 4043959 - 4043921 - T 100 -13.9 -5.42975 | opp_overlap 4043921 4043916 CCAGATAAACAAAAA TCGCGTTAGGCTCAGCT GTACT AGCCCTGCCTAACGCGA TTTTCTATTCCACTT TERM 4942 4043921 - 4043959 + T 100 -12.4 -4.6821 | opp_overlap 4043921, overlap 4043916 CCAGATAAACAAAAA TCGCGTTAGGCTCAGCTG TAC TAGCCCTGCCTAACGCGA TTTTCTATTCCACTT Shewana3_3373 4045197 - 4043980 - | Na(+)-translocating NADH-quinone reductase subunit F Shewana3_3374 4045857 - 4045249 - | Na(+)-translocating NADH-quinone reductase subunit E Shewana3_3375 4046487 - 4045867 - | Na(+)-translocating NADH-quinone reductase subunit D Shewana3_3376 4047278 - 4046484 - | Na(+)-translocating NADH-quinone reductase subunit C Shewana3_3377 4048482 - 4047268 - | Na(+)-translocating NADH-quinone reductase subunit B TERM 4943 4048449 - 4048461 + g 80 -4.8 -5.20154 | TGGCGTAATAGTCGT CCTG TAAAT CAGG TTTTTTAGGTTGTGT Shewana3_3378 4049852 - 4048482 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 4944 4050598 - 4050580 - g 71 -10.3 -3.14051 | overlap 4050578 TGATCGCCACTAAGA TTGCCGC ACCCG GCGGCAA GAGTGACTATATTCG TERM 4945 4050913 - 4050900 - g 73 -5.9 -4.58283 | CAACTGGCGGAAAAA CACGG CCTG CCGCG CATTGTGACTGTGCA Shewana3_3379 4050318 - 4051358 + | aldo/keto reductase TERM 4946 4051449 - 4051408 - f 74 -8 -3.91716 | opp_overlap 4051417, overlap 4051417 4051431 TGAGTTTTTAAACAA GCCTCTAAAGTGAGTGGC CAAAGT GCCACTCACTTGAGTCAC AGATTGATTGTCCAT TERM 4947 4051417 - 4051440 + F 93 -12.5 -3.06133 | opp_overlap 4051417 4051408 4051431 AAACAAGCCTCTAAA GTGAGTGGC CAAAGT GCCACTCAC TTGAGTCACAGATTG TERM 4948 4051440 - 4051417 - f 100 -12.5 -3.59649 | opp_overlap 4051417, overlap 4051408 4051431 AAACAAGCCTCTAAA GTGAGTGGC CAAAGT GCCACTCAC TTGAGTCACAGATTG TERM 4949 4051556 - 4051597 + G 73 -3.2 -4.99035 | gap 2, opp_overlap 4051547, overlap 4051561 GAAACAGGCCATTGT CCATATTGCACTCGTCGTAA GAGA TTACGATGAG-GCGAT-TGA TTTTTATGTCAATAA TERM 4950 4051561 - 4051593 + G 72 -8.6 -3.91281 | gap 1, overlap 4051556 AGGCCATTGTCCATA TTGCACTCGTCGTAA GAGA TTACGATGAG-GCGA TTGATTTTTATGTCA Shewana3_3380 4051539 - 4051961 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 4951 4052600 - 4052589 - g 71 -5.8 -4.28548 | opp_overlap 4052592 ATCTAGCTACCAAAA GGGT GGCA ACCC GGCCATTTACAAATT Shewana3_3381 4052137 - 4052664 + | hypothetical protein Shewana3_3382 4052865 - 4053155 + | hypothetical protein TERM 4952 4053173 - 4053183 + F 76 -2.6 -5.35354 | opp_overlap 4053173, overlap 4053166 AGCAAATTCAAAAAC TTAA AAA TTAA TTTTTTGCTTATCTA TERM 4953 4054090 - 4054036 - g 86 -6.5 -4.99035 | GCACCCACAGAAAAA CCGAGGAT-GTCGACATTCCCGGTAAT GCC ATTGCCGAT-ATGCCGACCACCCACGG CACCTTAGCCAATAG TERM 4954 4054227 - 4054196 - g 70 -10 -3.19192 | overlap 4054199 GCGCACCGAATCCAA CTACGGCATCCCCA GTCG TGGGGAAGCCGATG CACCCAATATCAGCA TERM 4955 4054224 - 4054199 - g 84 -14.7 -2.79188 | overlap 4054196 CACCGAATCCAACTA CGGCATCCCCA GTCG TGGGGAAGCCG ATGCACCCAATATCA TERM 4956 4054279 - 4054258 - g 90 -5.7 -5.28176 | opp_overlap 4054258 4054271 TCGACTTACAAAAAA CCGCTTGGC AGTT GCATAGCGG GCTACTCGACCCCTT Shewana3_3383 4053213 - 4055489 + | TonB-dependent receptor, plug TERM 4957 4055511 - 4055530 + T 100 -13.6 -5.13741 | opp_overlap 4055511 GCCATAAACCAAAAA GCGAAGCC ATTT GGCTTCGC TTTTTATTCACTTAA TERM 4958 4055530 - 4055511 - T 100 -13.6 -5.04601 | opp_overlap 4055511 GCCATAAACCAAAAA GCGAAGCC ATTT GGCTTCGC TTTTTATTCACTTAA Shewana3_3384 4056992 - 4055553 - | ATP-dependent RNA helicase DbpA TERM 4959 4057260 - 4057277 + r 79 -8.4 -4.08945 | opp_overlap 4057260, overlap 4057256 CGCTTAACCACCAAA GCAGGC TTTGTT GCCTGC TTTTAAGAGAGTCAT TERM 4960 4057277 - 4057260 - R 75 -8.4 -3.84246 | opp_overlap 4057256 4057260 CGCTTAACCACCAAA GCAGGC TTTGTT GCCTGC TTTTAAGAGAGTCAT TERM 4961 4057334 - 4057317 - R 100 -12.7 -5.1356 | opp_overlap 4057317 GTGCACTAACAAAAA GCCCTGC GTTT GCAGGGC TTAGTGGCTGTGACT TERM 4962 4057317 - 4057334 + r 93 -12.7 -3.2056 | opp_overlap 4057317 GTGCACTAACAAAAA GCCCTGC GTTT GCAGGGC TTAGTGGCTGTGACT Shewana3_3385 4058276 - 4057419 - | hypoxanthine phosphoribosyltransferase Shewana3_3386 4058736 - 4058843 + | hypothetical protein TERM 4963 4058853 - 4058828 - T 74 -4.1 -4.94992 | gap 1, opp_overlap 4058828, overlap 4058829 GCAAATGGACAAAAA TGAGTTAG-GTT ATT AACTCTAACTCG TCATTTTCGGATAAA TERM 4964 4058909 - 4058921 + T 75 -9.1 -3.63805 | opp_overlap 4058897 TAACGTGCTGCCGGA GCTGC GAA GCAGC TTTGGGCTGTCACGT Shewana3_3387 4059406 - 4058954 - | hypothetical protein TERM 4965 4059263 - 4059243 - G 82 -11.3 -3.65902 | overlap 4059255 GTGATTTGATGCAAA TGCATTGAA GAA TTCAATGCA TGAACTGCCAACTGG TERM 4966 4059442 - 4059432 - R 71 -6.8 -4.08692 | opp_overlap 4059432 TAAGGGGCCGGAAAA CTGC GCA GCAG TTTGGAGGTCCCAGT Shewana3_3388 4059850 - 4059497 - | hypothetical protein TERM 4967 4059665 - 4059632 - G 70 -10.3 -2.87132 | gap 1, opp_overlap 4059631 4059633 TTGCTCGTTGAGATA GGCCAAGGTGTCGTGG ATG CCA-GACTCCTTGGCG CCTTGGATCATTGAG TERM 4968 4059737 - 4059759 + g 74 -12 -2.74144 | opp_overlap 4059750, overlap 4059736 CTGGTTGATGTGCTC GTTGCCCGGA ACA TCCGGGAAAC CTTTACCCGTAACCC TERM 4969 4059908 - 4059922 + r 74 -7 -4.26076 | overlap 4059909 ACTTGTTGCGAGTCG AGCCGC GAA GCGGCG TTTTGATGGCGATGG TERM 4970 4059909 - 4059921 + r 77 -10.5 -3.15324 | overlap 4059908 CTTGTTGCGAGTCGA GCCGC GAA GCGGC GTTTTGATGGCGATG Shewana3_3389 4060219 - 4059938 - | putative lipoprotein TERM 4971 4060011 - 4060027 + g 80 -3 -5.24449 | TCTGTTTCTGCAATT GCTAAG TCAAT TTTAGC TTTTTTACATTTATC Shewana3_3390 4060774 - 4060301 - | hypothetical protein TERM 4972 4060796 - 4060819 + r 77 -10.2 -3.11619 | gap 1, opp_overlap 4060796, overlap 4060787 4060809 4060810 TAACGCCTGAATTAA GCCG-CACCGC GAA GCGGCGTCGGC TTGAATGAATTGTTA TERM 4973 4060819 - 4060796 - R 95 -12.4 -3.3482 | gap 1, opp_overlap 4060796 4060787 4060809 4060810 TAACGCCTGAATTAA GCCG-CACCGC GAA GCGGCGTCGGC TTGAATGAATTGTTA Shewana3_3391 4061092 - 4060832 - | hypothetical protein TERM 4974 4061250 - 4061220 - R 72 -9.9 -2.80821 | gap 1, opp_overlap 4061230, overlap 4061230 CTGCCAAATACACCA TCTGGAAAAACGCG CATG CGCGT-TTTCCAAA CCTATTAACTAAAAC TERM 4975 4061230 - 4061241 + r 73 -7.2 -4.09511 | opp_overlap 4061220 4061230 CACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 4976 4061241 - 4061230 - R 81 -7.2 -4.60487 | opp_overlap 4061230, overlap 4061220 CACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 4977 4061791 - 4061772 - R 75 -7.2 -4.37013 | overlap 4061773 AACTAACGAGCAAAA CTAAGCCT AGTC AGGCTTAA ACACCCCTATCACGG Shewana3_3392 4061978 - 4061778 - | hypothetical protein TERM 4978 4061876 - 4061889 + g 72 -3.8 -4.86731 | AGTCGGTGCATTCTA CGGT TTCGAT ACCG TTTTCTTTAAACAGC Shewana3_3393 4062366 - 4064279 + | ABC transporter related Shewana3_3394 4064315 - 4064776 + | hypothetical protein Shewana3_3395 4065198 - 4064788 - | glutathione-dependent formaldehyde-activating, GFA TERM 4979 4065219 - 4065238 + r 73 -5.6 -4.46212 | CTCCACGCTATTGCG GCTCGCGG CCAT CGGTGAGC TTTTGTGCTAACGCC Shewana3_3396 4066812 - 4065211 - | glucose-methanol-choline oxidoreductase Shewana3_3397 4067365 - 4066859 - | hypothetical protein Shewana3_3398 4067477 - 4068460 + | alpha/beta hydrolase fold Shewana3_3399 4068470 - 4068715 + | hypothetical protein TERM 4980 4068733 - 4068753 + F 77 -8.4 -3.9534 | ACCAGTATCCCTGTG CCGTATAA ATAGC TTATACGG TTTATCGCTCTAGAT TERM 4981 4068930 - 4068908 - g 70 -9.9 -3.18912 | opp_overlap 4068908 4068907 CCAGCTAGGGATTAA TGCCGCCTT TGTAG AAGGCGACA GTTTTCATCACTTTA TERM 4982 4069685 - 4069659 - g 82 -6.5 -4.75174 | gap 1, overlap 4069675 GATTTAATGGAAAAA CGCCAGC-AGCT GAAT AGCCCGCAGGCG AACTGAGATAGAGTG Shewana3_3400 4068804 - 4069691 + | phosphoribulokinase/uridine kinase Shewana3_3401 4070557 - 4070045 - | GCN5-related N-acetyltransferase TERM 4983 4070699 - 4070686 - R 100 -9.5 -5.4833 | opp_overlap 4070686 TTATGCAATAAAAAA CCGCC CGTA GGCGG TTTTAATACAATAAG TERM 4984 4070686 - 4070699 + r 88 -9.5 -4.26903 | opp_overlap 4070686 TTATGCAATAAAAAA CCGCC CGTA GGCGG TTTTAATACAATAAG Shewana3_3402 4072061 - 4070769 - | aminopeptidase B Shewana3_3403 4072293 - 4072997 + | sugar fermentation stimulation protein Shewana3_3404 4073160 - 4073603 + | TraR/DksA family transcriptional regulator TERM 4985 4073616 - 4073633 + F 100 -14.1 -3.07537 | opp_overlap 4073594, overlap 4073613 TAATCGGCCATCTCG GGCGGGG ATTT CCCCGCC TACTTGTTTGTGCGT TERM 4986 4073638 - 4073660 + F 71 -9.2 -2.90685 | ATTTCCCCGCCTACT TGTTTGTGCG TCT CGCATGAACA TCCTTCGTTTCACTT Shewana3_3405 4073739 - 4074638 + | glutamyl-tRNA synthetase, class Ic Shewana3_3406 4074921 - 4076228 + | poly(A) polymerase TERM 4987 4076316 - 4076276 - g 70 -8.1 -3.66803 | opp_overlap 4076281 4076290, overlap 4076291 CTTGAAGATCCTAAA GCTCAGCTGGACAATGCCG TTG CGGCCTTGTCCGCCTTGGC TGAACATCAGAGTCT TERM 4988 4076281 - 4076311 + G 77 -11.8 -3.06183 | opp_overlap 4076276 4076291, overlap 4076290 AGATCCTAAAGCTCA GCTGGACAATGCCG TTG CGGCCTTGTCCGCC TTGGCTGAACATCAG Shewana3_3407 4076228 - 4076716 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Shewana3_3408 4076773 - 4077567 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 4989 4078251 - 4078238 - g 83 -5.2 -5.06816 | overlap 4078239 4078240 ACGGCGGAAGAAAAA GCCG CGGCGC CGGC GCTGAAAAAAGCTAT Shewana3_3409 4077644 - 4078489 + | pantothenate synthetase TERM 4990 4078510 - 4078523 + F 100 -8.1 -5.63517 | opp_overlap 4078510 TTAGCGCAAGAAAAA GGAGC TTAG GCTCC TTTTTTGTTTGCGCA TERM 4991 4078523 - 4078510 - f 95 -8.1 -5.08601 | opp_overlap 4078510 TTAGCGCAAGAAAAA GGAGC TTAG GCTCC TTTTTTGTTTGCGCA Shewana3_3410 4078781 - 4079302 + | hypothetical protein TERM 4992 4079321 - 4079350 + T 95 -9.3 -4.48823 | opp_overlap 4079327, overlap 4079324 4079327 4079347 TCGAGTTTAGATAAC AAAAAAGGCGACC CTAG GGTCGCCTTGTTA TTTTATGACTTCATT TERM 4993 4079324 - 4079347 + T 100 -11 -4.34789 | opp_overlap 4079327, overlap 4079321 4079327 AGTTTAGATAACAAA AAAGGCGACC CTAG GGTCGCCTTG TTATTTTATGACTTC TERM 4994 4079327 - 4079344 + T 100 -12.7 -4.26938 | opp_overlap 4079327, overlap 4079324 4079321 TTAGATAACAAAAAA GGCGACC CTAG GGTCGCC TTGTTATTTTATGAC TERM 4995 4079344 - 4079327 - T 100 -12.7 -5.60689 | opp_overlap 4079327 4079324 4079321 TTAGATAACAAAAAA GGCGACC CTAG GGTCGCC TTGTTATTTTATGAC Shewana3_3411 4081871 - 4079364 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 4996 4081454 - 4081464 + g 74 -6.8 -4.42619 | CGATATCCGCATCGA CGGT GCC ACCG TTTTGTCCCGTGTTA TERM 4997 4082130 - 4082111 - H 70 -9.4 -2.81133 | GACTGATTTATCATA GGATTAAC AAAA GTTAATCC AACCTAGCAGGCTAT Shewana3_3412 4082273 - 4082692 + | curlin-associated protein Shewana3_3413 4082707 - 4084215 + | curlin-associated protein TERM 4998 4084257 - 4084279 + T 100 -16.4 -5.31519 | opp_overlap 4084257 ACGGCTCAATAAAAA CGGGAACATG AAT CATGTTCCCG TTTTTATTTGCGTAT TERM 4999 4084279 - 4084257 - T 100 -16.4 -5.06816 | opp_overlap 4084257 ACGGCTCAATAAAAA CGGGAACATG AAT CATGTTCCCG TTTTTATTTGCGTAT Shewana3_3414 4085081 - 4084416 - | LuxR family transcriptional regulator TERM 5000 4085400 - 4085426 + r 100 -19.6 -4.76644 | opp_overlap 4085400 TTTGAGGAATAAAAA TCCCCTCTAAGG AAG CCTTAGAGGGGA TTTTTGGTAAGTGTT TERM 5001 4085426 - 4085400 - R 100 -19.6 -5.1356 | opp_overlap 4085400 TTTGAGGAATAAAAA TCCCCTCTAAGG AAG CCTTAGAGGGGA TTTTTGGTAAGTGTT Shewana3_3415 4086055 - 4085447 - | hypothetical protein TERM 5002 4087299 - 4087282 - g 73 -6.3 -4.46669 | overlap 4087278 4087297 ATCAAAATCAACAAA GCCTTCT CTGA AAAAGGC ATCAACATTGCCGCT Shewana3_3416 4086211 - 4087440 + | D-3-phosphoglycerate dehydrogenase TERM 5003 4087468 - 4087509 + F 93 -11 -4.08064 | opp_overlap 4087471 4087474, overlap 4087471 4087474 TCAGCTTGAGTGAAT TTATAAGGCGCACATTTC ATTCAA GATATGTGCGCCTTATGC TTTTGAGCGCCGCTT TERM 5004 4087471 - 4087506 + F 100 -14.9 -3.08032 | opp_overlap 4087471 4087474, overlap 4087468 4087474 GCTTGAGTGAATTTA TAAGGCGCACATTTC ATTCAA GATATGTGCGCCTTA TGCTTTTGAGCGCCG TERM 5005 4087506 - 4087471 - f 100 -14.9 -2.54896 | opp_overlap 4087471 4087468 4087474, overlap 4087474 GCTTGAGTGAATTTA TAAGGCGCACATTTC ATTCAA GATATGTGCGCCTTA TGCTTTTGAGCGCCG TERM 5006 4087474 - 4087503 + F 93 -12.2 -3.68359 | opp_overlap 4087471 4087474, overlap 4087471 4087468 TGAGTGAATTTATAA GGCGCACATTTC ATTCAA GATATGTGCGCC TTATGCTTTTGAGCG TERM 5007 4087503 - 4087474 - f 91 -12.2 -3.4285 | opp_overlap 4087474 4087471 4087468, overlap 4087471 TGAGTGAATTTATAA GGCGCACATTTC ATTCAA GATATGTGCGCC TTATGCTTTTGAGCG Shewana3_3417 4087578 - 4088534 + | glycine cleavage T protein (aminomethyl transferase) TERM 5008 4088554 - 4088580 + T 100 -15.2 -4.3129 | opp_overlap 4088560, overlap 4088560 TAAACGAGTCGTATT GAAAAAGGCGCC CTA GGCGCCTTTTGC TTTTAATGCTCGATA TERM 5009 4088574 - 4088560 - T 100 -12.8 -4.66163 | opp_overlap 4088554 4088560 AGTCGTATTGAAAAA GGCGCC CTA GGCGCC TTTTGCTTTTAATGC TERM 5010 4088560 - 4088574 + T 100 -12.8 -4.70319 | opp_overlap 4088560, overlap 4088554 AGTCGTATTGAAAAA GGCGCC CTA GGCGCC TTTTGCTTTTAATGC Shewana3_3418 4089599 - 4088583 - | response regulator receiver modulated metal dependent phosphohydrolase Shewana3_3419 4094965 - 4089662 - | multi-sensor hybrid histidine kinase Shewana3_3420 4096475 - 4095117 - | amino acid carrier protein TERM 5011 4096908 - 4096875 - H 86 -12.7 -2.53876 | opp_overlap 4096883, overlap 4096883 CTTCATCCGAACGGA TTGTTAAATCGATAG TCCG CTATCGATTTAACAG GGCGCACAGCATGCA TERM 5012 4096900 - 4096883 - H 73 -8.5 -3.58269 | opp_overlap 4096883, overlap 4096875 GAACGGATTGTTAAA TCGATAG TCCG CTATCGA TTTAACAGGGCGCAC TERM 5013 4096883 - 4096900 + H 71 -8.5 -3.53012 | opp_overlap 4096883 4096875 GAACGGATTGTTAAA TCGATAG TCCG CTATCGA TTTAACAGGGCGCAC Shewana3_3421 4097120 - 4097791 + | ABC transporter related TERM 5014 4097902 - 4097925 + G 83 -8.8 -4.43309 | gap 1, overlap 4097903 TCGCCCACTATCGCC ACGCG-CCGCT GCA AGCGGGCGCGA TTTTGCTTGGCCTTG TERM 5015 4097903 - 4097924 + G 79 -12.3 -3.25262 | gap 1, overlap 4097902 CGCCCACTATCGCCA CGCG-CCGCT GCA AGCGGGCGCG ATTTTGCTTGGCCTT TERM 5016 4098629 - 4098609 - g 70 -8.3 -3.7104 | overlap 4098611 AGTTACAGTCAACAA GATCAAGGC CAA GCCTTGATG GCGCTTACCCGCAGC TERM 5017 4098627 - 4098611 - g 75 -10.9 -3.43446 | overlap 4098609 TTACAGTCAACAAGA TCAAGGC CAA GCCTTGA TGGCGCTTACCCGCA TERM 5018 4099651 - 4099630 - g 76 -6.5 -4.48299 | opp_overlap 4099630, overlap 4099612 GCACACTCAAACAAA GCTTGCCGG ATCT CTGGCAAAC TTACTTTGAAGGGCG Shewana3_3422 4097796 - 4100459 + | hypothetical protein Shewana3_3423 4100456 - 4101706 + | hypothetical protein Shewana3_3424 4101941 - 4102312 + | methylation site containing protein TERM 5019 4102487 - 4102473 - g 78 -10 -3.92075 | ATCTCCAGTTATAAA TTCGCC CGT GGCGAA GCCATCAAGCGCAAT Shewana3_3425 4102314 - 4102748 + | methylation site containing protein Shewana3_3426 4102739 - 4103146 + | prepilin-type cleavage/methylation-like protein Shewana3_3427 4103149 - 4103691 + | prepilin-type cleavage/methylation-like protein Shewana3_3428 4103707 - 4105332 + | hypothetical protein TERM 5020 4105365 - 4105386 + F 75 -8.7 -3.57797 | AACTCACTCGCTGGC TCCCTCTCC AAAG GGATAGGGA TTGTGTAAATTTCAA Shewana3_3429 4105574 - 4105843 + | NapD family protein TERM 5021 4107735 - 4107715 - g 86 -8.3 -4.59773 | overlap 4107733 TTCTATCTGCAAAAA GGCATTTTC GAA GAATATGCC GCCTTTGGTCGCGGC TERM 5022 4108196 - 4108186 - g 76 -8.2 -4.17132 | opp_overlap 4108187 4108195, overlap 4108174 4108187 AAAGGCCGTAACAAA CCGC CAC GCGG CGTGGTGTTTATGCC TERM 5023 4108187 - 4108203 + G 78 -10.1 -3.95051 | opp_overlap 4108174 4108186 4108187, overlap 4108195 AAGGCCGTAACAAAC CGCCACG CGG CGTGGTG TTTATGCCCTTCTTC Shewana3_3430 4105840 - 4108320 + | nitrate reductase napG 4108372 - 4109106 + | quinol dehydrogenase periplasmic component TERM 5024 4109163 - 4109145 - g 74 -6.6 -4.30416 | overlap 4109147 ACCATGAACTCAAAA GCCCGCAT GCA AGGCGAGC ATGCCGCAGCCATTG TERM 5025 4109740 - 4109762 + G 79 -12 -3.18912 | overlap 4109730 4109746 GGTGTGGTCACCTGT GCCCAACAGG CGC CCTGTTTGGC TTAATCGGTAAATGG napH 4109103 - 4110086 + | quinol dehydrogenase membrane component TERM 5026 4110390 - 4110377 - g 70 -8.1 -3.76224 | overlap 4110381 GCCCCACGGATGAAA GCCAC GCCA GTGGC GAAGTCCCACGTAAT Shewana3_3433 4110083 - 4110514 + | periplasmic nitrate reductase subunit NapB TERM 5027 4110539 - 4110558 + T 100 -9.3 -5.45802 | opp_overlap 4110539 TCCCTGCCCACAAAA GCCACTG CTAACC CAGTGGC TTTTTATTTTCCGCA TERM 5028 4110558 - 4110539 - T 88 -9.3 -4.36914 | opp_overlap 4110539 TCCCTGCCCACAAAA GCCACTG CTAACC CAGTGGC TTTTTATTTTCCGCA TERM 5029 4110753 - 4110778 + T 72 -6.1 -4.27914 | opp_overlap 4110758, overlap 4110745 4110758 AAACGATTAAAAAGT AAAAACCCAGC CTAG GCTGGGTTTAC TTGTTGTTTTGCTTT TERM 5030 4110773 - 4110758 - T 100 -10.4 -5.1971 | opp_overlap 4110753 4110745 4110758 ATTAAAAAGTAAAAA CCCAGC CTAG GCTGGG TTTACTTGTTGTTTT TERM 5031 4110758 - 4110773 + T 91 -10.4 -4.18711 | opp_overlap 4110758, overlap 4110753 4110745 ATTAAAAAGTAAAAA CCCAGC CTAG GCTGGG TTTACTTGTTGTTTT Shewana3_3434 4110916 - 4110764 - | hypothetical protein Shewana3_3435 4111011 - 4111898 + | LysR family transcriptional regulator TERM 5032 4112035 - 4112009 - T 100 -13.1 -5.64274 | gap 1, opp_overlap 4112009 TCACCCATAAAAAAA CCGCTGC-AAGC CTTG GCTTAGCAGCGG TTTCTATTTAGAGGA TERM 5033 4112009 - 4112035 + T 100 -13.1 -4.32857 | gap 1, opp_overlap 4112009 TCACCCATAAAAAAA CCGCTGC-AAGC CTTG GCTTAGCAGCGG TTTCTATTTAGAGGA Shewana3_3436 4114153 - 4112060 - | elongation factor G Shewana3_3437 4116095 - 4114644 - | diguanylate cyclase TERM 5034 4115536 - 4115516 - G 73 -9 -3.75051 | opp_overlap 4115516 4115515, overlap 4115514 CATTAACGGAAAACA TCGACCCC ACAAA GAGGTCGA CCTTTTTCTCGAGCA TERM 5035 4116507 - 4116526 + r 100 -13.6 -3.83724 | opp_overlap 4116507 ATTCAGATAAAAAAA TACCCGCC GATT GGCGGGTA TTTCGATTCTGTCAT TERM 5036 4116526 - 4116507 - R 100 -13.6 -5.72616 | opp_overlap 4116507 ATTCAGATAAAAAAA TACCCGCC GATT GGCGGGTA TTTCGATTCTGTCAT Shewana3_3438 4121108 - 4116555 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 5037 4119755 - 4119767 + g 80 -2.6 -5.4588 | opp_overlap 4119740 CGATGTTAAATAACA GCGC CTTAC GTGC TTTTTTGTAGTTTTC TERM 5038 4120318 - 4120303 - G 71 -7.6 -4.10164 | TCACCAGGAGAGAAA TCGATG ATGC CATCGA TACAACCCGCGGTGT Shewana3_3439 4121231 - 4122142 + | LysR family transcriptional regulator TERM 5039 4122257 - 4122238 - T 95 -5.7 -5.60689 | opp_overlap 4122238, overlap 4122231 TGAGATAACAAAAAA GCCTAGC GAATTG ACTAGGC TTTTTGCGTTTAGGA TERM 5040 4122238 - 4122257 + T 74 -5 -4.81249 | gap 1, opp_overlap 4122238 4122231 TGAGATAACAAAAAA GCCTAG-CG AAT TGACTAGGC TTTTTGCGTTTAGGA Shewana3_3440 4123240 - 4122443 - | penicillin-binding protein, transpeptidase TERM 5041 4123368 - 4123349 - H 70 -5.6 -4.40561 | opp_overlap 4123349 4123350, overlap 4123346 4123350 TTGTGGCAAAAATAA GGCAGGCA CTTA TGCCCGCG TTTCTCGCCACTCAA TERM 5042 4123367 - 4123350 - H 71 -9.1 -3.23855 | opp_overlap 4123350 4123349, overlap 4123349 4123346 TGTGGCAAAAATAAG GCAGGCA CTTA TGCCCGC GTTTCTCGCCACTCA Shewana3_3441 4123590 - 4124747 + | hypothetical protein Shewana3_3442 4124928 - 4125533 + | hypothetical protein TERM 5043 4125632 - 4125618 - f 84 -11.4 -3.18945 | overlap 4125616 4125614 TTCAGGCATAAGAGA CGAGCC ACA GGCTCG CGTAGTACAGATTAC TERM 5044 4125828 - 4125841 + G 76 -3.1 -5.20333 | gap 1 AGTCGCCAAGGCACC CTG-CC CGC GGTCAG TTTTTATTGTGGCTG Shewana3_3443 4125663 - 4126436 + | endonuclease I Shewana3_3444 4126445 - 4127176 + | hypothetical protein Shewana3_3445 4127283 - 4128230 + | glutathione synthetase TERM 5045 4128282 - 4128266 - f 84 -11.5 -3.08642 | opp_overlap 4128261 4128260 ATATTATTCATTGAA GGCGCCC ACA GAGCGCC TACGACTTCTAGGGA TERM 5046 4129026 - 4129006 - g 74 -4.7 -4.7497 | GCTATTGATGAAAAA GATGCTAAA AAA CTCAGCACC TTGACTCAAAAAGCC Shewana3_3446 4128304 - 4129698 + | alkaline phosphatase TERM 5047 4129712 - 4129762 + F 100 -12.9 -3.90112 | gap 1, opp_overlap 4129726, overlap 4129726 AATTTGCTGCGATTA GCTAATAGATGAAAGGCAACCGTG TTAA CACTGTTGCCTTTT-TTTATTGGC TTTCATTCCACACCA TERM 5048 4129726 - 4129749 + F 100 -11 -5.83226 | opp_overlap 4129726, overlap 4129712 AGCTAATAGATGAAA GGCAACCGTG TTAA CACTGTTGCC TTTTTTTATTGGCTT TERM 5049 4129749 - 4129726 - f 90 -11 -3.93664 | opp_overlap 4129726 4129712 AGCTAATAGATGAAA GGCAACCGTG TTAA CACTGTTGCC TTTTTTTATTGGCTT TERM 5050 4130638 - 4130589 - g 73 -12 -2.5655 | overlap 4130588 TGTATTGATATCAAT GCCATGGCGCTGGCCTCCTGCG AACTTA CGCTGGCGGCAAACGGCATGAC GGCCAAGGTCTATCC Shewana3_3447 4129854 - 4130915 + | 16S rRNA m(2)G 1207 methyltransferase TERM 5051 4130921 - 4130946 + F 100 -13.3 -2.90283 | overlap 4130918 ACAGGCCTAATCTTT CGCCCCACTCA ATTG TGAGTGGGGCA TCCTTAATTTGACTC Shewana3_3448 4131429 - 4131998 + | hypothetical protein TERM 5052 4132388 - 4132372 - g 70 -2.9 -4.81863 | overlap 4132373 AAACTTACAATAAAA CCACGCT GCC AGCATGC AAAGATTGTAATTCA Shewana3_3449 4132077 - 4132910 + | hypothetical protein Shewana3_3450 4133043 - 4133441 + | hypothetical protein TERM 5053 4135342 - 4135326 - g 79 -5.1 -4.94058 | overlap 4135327 CGAACTCAAACAAAA TCTCAAG CAG CTTGAGG AGAGCGTGCATGCAA Shewana3_3451 4134028 - 4135719 + | hypothetical protein TERM 5054 4135735 - 4135778 + F 71 -9.6 -2.91873 | opp_overlap 4135735 4135737, overlap 4135734 4135747 CGGGGCAATCATCAA CACCCGCTAAGGGTTCATTC CATT GAGTGAACTCTTAGCGTGAA TGCTTTGCCACTCAT TERM 5055 4135776 - 4135737 - f 86 -12.2 -3.20227 | opp_overlap 4135735 4135734 4135747, overlap 4135735 GGGCAATCATCAACA CCCGCTAAGGGTTCATTC CATT GAGTGAACTCTTAGCGTG AATGCTTTGCCACTC Shewana3_3452 4135947 - 4136324 + | hypothetical protein TERM 5056 4136376 - 4136362 - f 77 -3.6 -5.22006 | CGATCACAATAAAAA TTAAGA TGA TCCTAA AAGCTAATATCCTCA TERM 5057 4136423 - 4136434 + F 72 -7.2 -4.07568 | opp_overlap 4136423, overlap 4136433 ATAATTTGTCATACA CGGC TCAG GCCG TTTTGCCCAAAGCGA Shewana3_3453 4136514 - 4137638 + | peptidase M50 TERM 5058 4137668 - 4137711 + T 100 -13.4 -3.20236 | gap 1, opp_overlap 4137678, overlap 4137678 AAGATAAAAGCGAGA TAATAAAAAACCGCGATAGCC TTA GGC-ATCGCGGTTTTTATTTA TTAACTATTCAATTA TERM 5059 4137678 - 4137701 + T 100 -13.2 -5.47159 | gap 1, opp_overlap 4137678, overlap 4137668 CGAGATAATAAAAAA CCGCGATAGCC TTA GGC-ATCGCGG TTTTTATTTATTAAC TERM 5060 4137701 - 4137678 - T 100 -13.2 -5.60689 | gap 1, opp_overlap 4137678 4137668 CGAGATAATAAAAAA CCGCGATAGCC TTA GGC-ATCGCGG TTTTTATTTATTAAC Shewana3_3454 4139157 - 4137724 - | outer membrane efflux protein TERM 5061 4138620 - 4138605 - G 71 -10.4 -3.0782 | opp_overlap 4138615, overlap 4138603 CAATCTGCCAATAGA GCGACG CCGT CGTCGC AACGAGACTCTGCGC Shewana3_3455 4141132 - 4139162 - | ABC transporter related Shewana3_3456 4142364 - 4141135 - | RND family efflux transporter MFP subunit TERM 5062 4141321 - 4141350 + g 82 -10.7 -3.8709 | TTGATACTGCGGCCC GCGGGATTGGCGA TCGC TTGCCGATGCCGC TTTATCCCGCGGTTT Shewana3_3457 4142698 - 4143624 + | PHB depolymerase family esterase Shewana3_3458 4143817 - 4146093 + | TonB-dependent receptor TERM 5063 4146116 - 4146147 + F 100 -13.2 -3.5936 | opp_overlap 4146117 4146120 4146123, overlap 4146117 4146120 4146123 TGTTATTGACAAATA ATAATAACCGACTC CCAT GAGTCGGTTATTAA TTTAACGGCTTTAAA TERM 5064 4146117 - 4146146 + F 100 -16.7 -2.75294 | opp_overlap 4146117 4146120 4146123, overlap 4146116 4146120 4146123 GTTATTGACAAATAA TAATAACCGACTC CCAT GAGTCGGTTATTA ATTTAACGGCTTTAA TERM 5065 4146146 - 4146117 - f 100 -16.7 -4.09117 | opp_overlap 4146117 4146116 4146120 4146123, overlap 4146120 4146123 GTTATTGACAAATAA TAATAACCGACTC CCAT GAGTCGGTTATTA ATTTAACGGCTTTAA TERM 5066 4146143 - 4146120 - f 100 -14 -4.16305 | opp_overlap 4146120 4146117 4146116 4146123, overlap 4146117 4146123 ATTGACAAATAATAA TAACCGACTC CCAT GAGTCGGTTA TTAATTTAACGGCTT TERM 5067 4146120 - 4146143 + F 100 -14 -3.51976 | opp_overlap 4146117 4146120 4146123, overlap 4146117 4146116 4146123 ATTGACAAATAATAA TAACCGACTC CCAT GAGTCGGTTA TTAATTTAACGGCTT TERM 5068 4146140 - 4146123 - f 100 -11.3 -4.18443 | opp_overlap 4146120 4146117 4146116 4146123, overlap 4146120 4146117 GACAAATAATAATAA CCGACTC CCAT GAGTCGG TTATTAATTTAACGG TERM 5069 4146123 - 4146140 + F 95 -11.3 -3.89354 | opp_overlap 4146123 4146120 4146117, overlap 4146120 4146117 4146116 GACAAATAATAATAA CCGACTC CCAT GAGTCGG TTATTAATTTAACGG TERM 5070 4146802 - 4146785 - g 85 -3.5 -5.44721 | gap 1, opp_overlap 4146788, overlap 4146788 ACCACGGTAAAAAAA CACGTATC GGC GATAC-TG GTTAAACTCGAAGTC Shewana3_3459 4146224 - 4146895 + | two component LuxR family transcriptional regulator TERM 5071 4146932 - 4146950 + T 100 -6 -5.93809 | opp_overlap 4146926 4146932 AAACCTAAAGAAAAA CAGTGG AACTAAG CCACTG TTTTTTTTATCAGCA TERM 5072 4146950 - 4146932 - T 86 -6 -5.34381 | opp_overlap 4146932, overlap 4146926 AAACCTAAAGAAAAA CAGTGG AACTAAG CCACTG TTTTTTTTATCAGCA Shewana3_3460 4150524 - 4146997 - | multi-sensor hybrid histidine kinase TERM 5073 4148400 - 4148421 + g 71 -5 -4.57073 | AATGGTGTGGGCTGC CGCTACGC ATATGG GCGAGGCG TTTTTCAACCAGCTC TERM 5074 4149270 - 4149259 - G 70 -2.2 -5.00616 | GGCGGCGGGAAAAAA CTGC GACA ACAG CACAAAGGATAATAA TERM 5075 4149948 - 4149958 + g 79 -5.4 -4.93877 | opp_overlap 4149948 AGGCAATCGCTAATA CCAA GCC TTGG TTTTGTTTACTGGCC TERM 5076 4151342 - 4151353 + G 74 -4.4 -4.80455 | GCCCTCACCTACTCG GGAT TATT ATCC TTTTATATTTGCCTA TERM 5077 4151644 - 4151674 + G 79 -8.4 -4.2828 | opp_overlap 4151643 GCTACCTAAGATGAC CAGTCAAAAAATCA CAG TGATTTTTAGCCTG TTTTGGTCAATCAGC Shewana3_3461 4150670 - 4151845 + | major facilitator transporter Shewana3_3462 4151848 - 4152837 + | alpha/beta hydrolase domain-containing protein TERM 5078 4152861 - 4152897 + T 88 -6.6 -5.08824 | opp_overlap 4152864, overlap 4152864 TTCAAACTCTCCCTC AAAGCACCTACACCCA AGATA TGTTTGTAGGTGCTTA TTTTTTAAGTAGCAA TERM 5079 4152864 - 4152894 + T 91 -8.3 -4.64763 | opp_overlap 4152864, overlap 4152861 AAACTCTCCCTCAAA GCACCTACACCCA AGATA TGTTTGTAGGTGC TTATTTTTTAAGTAG TERM 5080 4152894 - 4152864 - T 71 -8.3 -3.5394 | opp_overlap 4152864 4152861 AAACTCTCCCTCAAA GCACCTACACCCA AGATA TGTTTGTAGGTGC TTATTTTTTAAGTAG Shewana3_3463 4153410 - 4152955 - | hypothetical protein TERM 5081 4153475 - 4153510 + r 100 -17.8 -3.57639 | opp_overlap 4153480, overlap 4153480 AGAGATTAACGCGAA AAAAACGGGATGGGTA TTTT TACCCATCCCGTTTTG TATTTCTCAGTCTTA TERM 5082 4153505 - 4153480 - R 100 -17.7 -5.47399 | opp_overlap 4153480 4153475 TTAACGCGAAAAAAA CGGGATGGGTA TTTT TACCCATCCCG TTTTGTATTTCTCAG TERM 5083 4153480 - 4153505 + r 100 -17.7 -4.84918 | opp_overlap 4153480, overlap 4153475 TTAACGCGAAAAAAA CGGGATGGGTA TTTT TACCCATCCCG TTTTGTATTTCTCAG Shewana3_3464 4155243 - 4153537 - | amidase Shewana3_3465 4156433 - 4155321 - | agmatine deiminase TERM 5084 4156391 - 4156378 - G 86 -6.7 -4.96848 | opp_overlap 4156378 4156377 GCGGGCATATAAAAA CCATC TTCT GATGG CTTAGTCGTTAACTG TERM 5085 4156744 - 4156763 + r 100 -13.6 -4.45738 | opp_overlap 4156744 AAGCCAATGCGAAAA GGCGAACC ATAA GGTTCGCC TTTGTTATTAACGTC TERM 5086 4156763 - 4156744 - R 100 -13.6 -4.20354 | opp_overlap 4156744 AAGCCAATGCGAAAA GGCGAACC ATAA GGTTCGCC TTTGTTATTAACGTC Shewana3_3466 4157707 - 4156829 - | short-chain dehydrogenase/reductase SDR TERM 5087 4158097 - 4158073 - g 91 -2.7 -5.77856 | overlap 4158076 AACAAATCAAAAAAA TGATCGCCTCC TAT GTAGGCGAGAA TGCTAACTTCGAGGC TERM 5088 4158094 - 4158076 - g 70 -8.8 -3.57012 | overlap 4158073 AAATCAAAAAAATGA TCGCCTCC TAT GTAGGCGA GAATGCTAACTTCGA TERM 5089 4158195 - 4158175 - g 70 -2.4 -5.00616 | opp_overlap 4158188, overlap 4158177 CGCTGGCGGAAAAAA TGCGTGCG GCGGG CGCGGGCA TTCCAGCGTTTTATA TERM 5090 4158188 - 4158203 + G 71 -6 -4.37092 | opp_overlap 4158177 4158175 AATGCGTGCGGCGGG CGCGGG CATT CCAGCG TTTTATACCGCAACT Shewana3_3467 4157847 - 4158554 + | 3-oxoacid CoA-transferase, A subunit Shewana3_3468 4158564 - 4159226 + | butyryl-CoA:acetate CoA transferase TERM 5091 4159315 - 4159291 - T 95 -7.1 -5.45652 | opp_overlap 4159292, overlap 4159292 ATCGCCAATAAAAAA GCAGGGATATC TTA GGTATCCCTGT TTTTTACGCTATGCC TERM 5092 4159314 - 4159292 - T 86 -10.6 -3.86307 | opp_overlap 4159292, overlap 4159291 TCGCCAATAAAAAAG CAGGGATATC TTA GGTATCCCTG TTTTTTACGCTATGC TERM 5093 4159292 - 4159314 + T 100 -12.8 -5.07567 | opp_overlap 4159292 4159291 TCGCCAATAAAAAAG CAGGGATATC TTA GGTATCCCTG TTTTTTACGCTATGC Shewana3_3469 4161633 - 4159363 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Shewana3_3470 4161834 - 4162739 + | LysR family transcriptional regulator TERM 5094 4162788 - 4162753 - T 86 -10.6 -3.90316 | opp_overlap 4162763, overlap 4162756 4162763 AGCGCCGTAAAAACA GCATAAAAAAGCCTGC AATC GCAGGCTTTTTTATTA AAGGCACATTCCTAG TERM 5095 4162785 - 4162756 - T 100 -16.7 -3.01831 | opp_overlap 4162763, overlap 4162753 4162763 GCCGTAAAAACAGCA TAAAAAAGCCTGC AATC GCAGGCTTTTTTA TTAAAGGCACATTCC TERM 5096 4162763 - 4162778 + T 100 -10.4 -5.4505 | opp_overlap 4162756 4162753 4162763 AAACAGCATAAAAAA GCCTGC AATC GCAGGC TTTTTTATTAAAGGC TERM 5097 4162778 - 4162763 - T 100 -10.4 -5.38321 | opp_overlap 4162763, overlap 4162756 4162753 AAACAGCATAAAAAA GCCTGC AATC GCAGGC TTTTTTATTAAAGGC Shewana3_3471 4163528 - 4162800 - | putative signal transduction protein TERM 5098 4163739 - 4163709 - R 76 -7.7 -4.11304 | CGAACTTATAAAGAA TACACCGAGAAAA TGGAT TTTTCTCTGCGTA TAGCCAAACAACGGA TERM 5099 4163758 - 4163786 + r 100 -14.7 -2.53911 | opp_overlap 4163760 4163763, overlap 4163763 CCAAACAACGGAAAT AATAAGGCCAGAC TAA GTCTGGCCTTATA TAGATTAACGATTAG TERM 5100 4163784 - 4163760 - R 100 -17.3 -4.05677 | opp_overlap 4163758 4163763, overlap 4163763 AAACAACGGAAATAA TAAGGCCAGAC TAA GTCTGGCCTTA TATAGATTAACGATT TERM 5101 4163781 - 4163763 - R 100 -14.6 -4.1235 | opp_overlap 4163758 4163763, overlap 4163760 CAACGGAAATAATAA GGCCAGAC TAA GTCTGGCC TTATATAGATTAACG TERM 5102 4163763 - 4163781 + r 100 -14.6 -3.551 | opp_overlap 4163763 4163760, overlap 4163758 CAACGGAAATAATAA GGCCAGAC TAA GTCTGGCC TTATATAGATTAACG Shewana3_3472 4165771 - 4163810 - | TonB-dependent siderophore receptor TERM 5103 4164954 - 4164936 - G 73 -10.2 -3.31263 | opp_overlap 4164933 4164919 4164936 4164952 AGCTGATGCTGATAA CCGCTGCG CGC CGCAGTGG TCATCTCATGAACAT TERM 5104 4164936 - 4164954 + g 73 -12.4 -2.66435 | opp_overlap 4164936, overlap 4164933 4164919 4164952 AGCTGATGCTGATAA CCGCTGCG CGC CGCAGTGG TCATCTCATGAACAT TERM 5105 4165383 - 4165365 - G 77 -11.8 -3.12005 | GATAGAATTTCAACA CGCTCAAT TAA ATTGAGCG GAATCGCATTCAGGC Shewana3_3473 4166905 - 4166237 - | hypothetical protein TERM 5106 4167120 - 4167097 - R 84 -11.1 -3.73647 | GTGATGGATTAACAA GCTGGTGAA TGGGTC TTCACCAGC TGAGAAATGCCTTAC Shewana3_3474 4168587 - 4167151 - | hypothetical protein TERM 5107 4167955 - 4167966 + g 74 -3.6 -5.00884 | opp_overlap 4167954, overlap 4167954 CTCCCCCCAAACTAC GGCG CTGG CGTC TTTTTTCAGGGCAAT Shewana3_3475 4169865 - 4168591 - | hypothetical protein TERM 5108 4169930 - 4169915 - H 71 -4.6 -4.60889 | AACCAGCCCCAAAAA CGCGTG GGTG CACTCG AGGTTAATTGACTGC rihA 4170160 - 4171116 + | ribonucleoside hydrolase 1 Shewana3_3477 4171135 - 4172046 + | ribokinase Shewana3_3478 4172215 - 4172691 + | blue (type1) copper domain-containing protein TERM 5109 4172730 - 4172777 + T 100 -14.4 -3.18054 | gap 1, opp_overlap 4172733 4172745, overlap 4172745 4172769 AGGGAATACCTTAAG TG-AGACGACAAAAAAGCGGACC TCT GGTCCGCTTTTTTGTTGAGTGCA TATTGGCTTATAAGC TERM 5110 4172773 - 4172733 - T 93 -14.1 -2.55 | opp_overlap 4172730 4172745 4172769, overlap 4172745 GAATACCTTAAGTGA GACGACAAAAAAGCGGACC TCT GGTCCGCTTTTTTGTTGAG TGCATATTGGCTTAT TERM 5111 4172761 - 4172745 - T 100 -13.7 -5.34555 | opp_overlap 4172730 4172745, overlap 4172733 TGAGACGACAAAAAA GCGGACC TCT GGTCCGC TTTTTTGTTGAGTGC TERM 5112 4172745 - 4172761 + T 100 -13.7 -5.4833 | opp_overlap 4172745 4172733, overlap 4172730 TGAGACGACAAAAAA GCGGACC TCT GGTCCGC TTTTTTGTTGAGTGC Shewana3_3479 4173145 - 4172840 - | hypothetical protein Shewana3_3480 4173500 - 4174765 + | glycerophosphoryl diester phosphodiesterase TERM 5113 4174829 - 4174807 - T 100 -12.8 -5.72622 | opp_overlap 4174807 CCGAGAAACAAAAAA GCGTTAGCAA ATA CTGCTAACGC TTTTTATTAACAGAT TERM 5114 4174807 - 4174829 + T 100 -12.1 -5.06816 | opp_overlap 4174807 CCGAGAAACAAAAAA GCGTTAGCA AATAC TGCTAACGC TTTTTATTAACAGAT Shewana3_3481 4175416 - 4174850 - | hypoxanthine-guanine phosphoribosyltransferase TERM 5115 4175594 - 4175584 - R 85 -2.4 -5.90981 | TTATACCAAAAAAAA CCGC CGT GCTG CAGTTATAGTCATAA TERM 5116 4175692 - 4175675 - R 100 -12.7 -5.28826 | AAAGCGTACAAAAAA GGCCACC CAAA GGTGGCC AACAAGGAACGAGCA Shewana3_3482 4177516 - 4175750 - | alkaline phosphatase TERM 5117 4176106 - 4176122 + g 76 -5.1 -4.81249 | GGGTGTCACCGGCAA TCACCAC TAG GTTGTGA TTTTTCGATTTAGCG TERM 5118 4177233 - 4177261 + g 70 -9.8 -3.31144 | gap 1 TAATCACGGTTAGCA TTAGTGACCATCT CCCC AG-TGGTCACTAA TTGTGAGAATGCCGC TERM 5119 4177404 - 4177391 - G 79 -6.7 -4.67011 | opp_overlap 4177390 AACCCCATGTAAAAA CTGTG CGGG CACAG AGTTATCATCATCAC Shewana3_3483 4177778 - 4178203 + | CBS domain-containing protein TERM 5120 4178566 - 4178576 + G 79 -8.2 -4.30177 | opp_overlap 4178553 4178551 CACCCACTCTGCGAT GCGG GTA CCGC TTTATTGCTCTACTG Shewana3_3484 4178287 - 4178892 + | hypothetical protein Shewana3_3485 4180304 - 4178943 - | MATE efflux family protein TERM 5121 4178987 - 4178977 - G 71 -6.8 -4.14472 | GGAATACGGGTAAAA CGCT GCC AGCG ACCCGAGCGCCAACG Shewana3_3486 4180632 - 4181546 + | alpha/beta hydrolase domain-containing protein TERM 5122 4181584 - 4181556 - T 95 -13.2 -3.18681 | opp_overlap 4181554 GTTTAACCTCAGTAA GCCGCATGCC TTAATGCGG GGCATGCGGC GATTGAATCCATTCA Shewana3_3487 4182122 - 4181640 - | hypothetical protein TERM 5123 4181848 - 4181829 - G 74 -4.8 -4.7497 | overlap 4181809 4181831 CTTAGGCACTAAAAA CTGCGGTC TTTC GCCCGCGG CTAAATCCAGCCCCA Shewana3_3488 4182368 - 4183276 + | diguanylate cyclase TERM 5124 4183333 - 4183304 - T 81 -10.9 -3.35467 | opp_overlap 4183311, overlap 4183311 CCGACAAATCACCAA TAAAAAAGCGAAC CTAG GTTCGCTTTTTTT ATATACATCACACGC TERM 5125 4183326 - 4183311 - T 100 -9 -5.52023 | opp_overlap 4183311, overlap 4183304 ATCACCAATAAAAAA GCGAAC CTAG GTTCGC TTTTTTTATATACAT TERM 5126 4183311 - 4183326 + T 100 -9 -5.72616 | opp_overlap 4183311 4183304 ATCACCAATAAAAAA GCGAAC CTAG GTTCGC TTTTTTTATATACAT Shewana3_3489 4185589 - 4183361 - | hypothetical protein TERM 5127 4184308 - 4184291 - G 70 -8.3 -3.72576 | opp_overlap 4184290 TGGGTGGGCACCAAA GGAGGCG AATA CGCCGCC GGTTTTCGGGTTCAT Shewana3_3490 4186008 - 4185766 - | hypothetical protein TERM 5128 4186648 - 4186636 - g 72 -4.1 -4.77567 | AGGGGCAGAATAAAA TCGAT ATG ACCGA TCCCCGCGGCACCAA Shewana3_3491 4186284 - 4187948 + | methyl-accepting chemotaxis sensory transducer TERM 5129 4188060 - 4188041 - T 86 -12.2 -3.13164 | opp_overlap 4188041 TCTTTAACCACCTAA GGCCTCAA GCAA TTGAGGCC TTTTTCTTGGGTGCT TERM 5130 4188041 - 4188060 + T 100 -12.2 -5.11063 | opp_overlap 4188041 TCTTTAACCACCTAA GGCCTCAA GCAA TTGAGGCC TTTTTCTTGGGTGCT Shewana3_3492 4188515 - 4188126 - | hypothetical protein Shewana3_3493 4188792 - 4189037 + | hypothetical protein TERM 5131 4189108 - 4189072 - T 100 -16.9 -2.54193 | opp_overlap 4189081, overlap 4189081 TAGCAGCTTAATGGA TAATAAAAACGGCCAAT TCG ATTGGCCGTTTTTATTT GCCCTACGTAACACC TERM 5132 4189099 - 4189081 - T 100 -13.2 -5.21236 | opp_overlap 4189081, overlap 4189072 AATGGATAATAAAAA CGGCCAAT TCG ATTGGCCG TTTTTATTTGCCCTA TERM 5133 4189081 - 4189099 + T 100 -13.2 -5.28942 | opp_overlap 4189081 4189072 AATGGATAATAAAAA CGGCCAAT TCG ATTGGCCG TTTTTATTTGCCCTA Shewana3_3494 4191307 - 4190297 - | hypothetical protein TERM 5134 4190733 - 4190758 + g 71 -11.1 -2.7185 | overlap 4190731 4190733 TTGCACCTTGCTACT GCTGCGGCAGC TCTT GCTACTGCAGC TCGTTCAGCCGTGGT Shewana3_3495 4191579 - 4191310 - | hypothetical protein Shewana3_3496 4194899 - 4191837 - | cell divisionFtsK/SpoIIIE TERM 5135 4191928 - 4191951 + g 77 -11.8 -3.12595 | overlap 4191927 4191933 TTACTGACTGTGTTG GCGAACAGCT CTTC AGCTGTTTGC TCTTCGCTACTTACA TERM 5136 4193988 - 4194012 + g 73 -11.6 -2.87132 | ACCTGCACGAGCTCC GTTGTTAGCT ATTTG AGCTAACAAC TCTATCGACCGACGG TERM 5137 4194460 - 4194446 - G 73 -5 -4.63218 | CCTTTGTGAAGAAAA CGAATA TTT CATTCG CTAGAATATTTTGTG TERM 5138 4194592 - 4194607 + g 82 -7.6 -4.65819 | TGATTCTTGGCACTT TGGATC AGTT GATCCA TTTTGCTTTGATTTT Shewana3_3497 4195426 - 4194899 - | hypothetical protein Shewana3_3498 4197252 - 4195456 - | hypothetical protein TERM 5139 4198121 - 4198140 + r 91 -7.8 -4.84359 | opp_overlap 4198122, overlap 4198122 AACAAGTAACAAAAA AGCGAACC GAAA GGTTCGCC TTTTTCTGGAGGTAA TERM 5140 4198139 - 4198122 - R 100 -11.3 -5.57396 | opp_overlap 4198122 4198121 ACAAGTAACAAAAAA GCGAACC GAAA GGTTCGC CTTTTTCTGGAGGTA TERM 5141 4198122 - 4198139 + r 89 -11.3 -3.50133 | opp_overlap 4198122, overlap 4198121 ACAAGTAACAAAAAA GCGAACC GAAA GGTTCGC CTTTTTCTGGAGGTA Shewana3_3499 4201132 - 4198244 - | glycine dehydrogenase TERM 5142 4201245 - 4201218 - R 100 -14.2 -4.0896 | opp_overlap 4201226 4201240, overlap 4201222 AAACTTGCGCTAAAA CAAACGAAGCCC CTTG GGGCTTCGTTAG CGTCGACGATTATTC TERM 5143 4201241 - 4201222 - R 100 -13.6 -4.64861 | opp_overlap 4201226 4201240, overlap 4201218 TTGCGCTAAAACAAA CGAAGCCC CTTG GGGCTTCG TTAGCGTCGACGATT Shewana3_3500 4201644 - 4201255 - | glycine cleavage system protein H gcvT 4202764 - 4201670 - | glycine cleavage system aminomethyltransferase T TERM 5144 4201885 - 4201897 + g 100 -9.1 -5.10461 | opp_overlap 4201884 ATACTGGCATATCAT GGCGT AAC ACGCC TTTTTCTTCCATCAC TERM 5145 4203136 - 4203118 - R 73 -8.2 -3.6502 | opp_overlap 4203093 4203110 4203118, overlap 4203095 CAGCCTGCAGCCAAA TCGCTGAT ATT ATCAGCAA TTATGATTACATTAG Shewana3_3502 4204386 - 4203163 - | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Shewana3_3503 4205628 - 4204423 - | 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 5146 4205736 - 4205720 - R 100 -12.3 -3.82097 | opp_overlap 4205720 TTGAAACTTATCAAA GGCGGAA TGA TTCCGCC TCTCTCGTTAGTGAT TERM 5147 4205720 - 4205736 + r 93 -12.3 -3.02364 | opp_overlap 4205720 TTGAAACTTATCAAA GGCGGAA TGA TTCCGCC TCTCTCGTTAGTGAT Shewana3_3504 4206326 - 4205751 - | yecA family protein TERM 5148 4206819 - 4206787 - g 76 -6.9 -4.54205 | opp_overlap 4206788, overlap 4206788 ACTATATGAAACAAA TGGATGACCGCATCA GCC TGTTGCAGTCAACCT TGGAAAACGCCTTAG TERM 5149 4206818 - 4206788 - g 73 -10.4 -3.31438 | opp_overlap 4206788, overlap 4206787 CTATATGAAACAAAT GGATGACCGCATCA GCC TGTTGCAGTCAACC TTGGAAAACGCCTTA Shewana3_3505 4206552 - 4206854 + | cell division protein ZapA TERM 5150 4207633 - 4207654 + G 73 -11.7 -2.62983 | TGATCACCCCGCTGG TTGCCTTTG ATAT CAAAGGCAA TCGTATGGGAATGGG Shewana3_3506 4207158 - 4207835 + | 5-formyltetrahydrofolate cyclo-ligase Shewana3_3507 4208716 - 4207997 - | short chain dehydrogenase Shewana3_3508 4208927 - 4209316 + | putative thiol-disulphide oxidoreductase DCC TERM 5151 4209375 - 4209358 - T 100 -12.7 -5.626 | opp_overlap 4209358 TAGCGCATAAAAAAA CGGAGCC ATTA GGCTCCG TTCTCTCATAATCCA TERM 5152 4209358 - 4209375 + T 100 -12.7 -3.56273 | opp_overlap 4209358 TAGCGCATAAAAAAA CGGAGCC ATTA GGCTCCG TTCTCTCATAATCCA Shewana3_3509 4210332 - 4209397 - | malate dehydrogenase TERM 5153 4209940 - 4209967 + g 70 -8.4 -3.80114 | opp_overlap 4209942 4209960 ACCGGCTTTCTTCAA CACTTCTGCTGC GATA GCAACAGTAGTG TTTACTGGGTTAGTG TERM 5154 4210145 - 4210116 - G 70 -8.5 -3.65986 | opp_overlap 4210119 4210130, overlap 4210119 CAGCAGAAATTAGAA CAACGTCAGCACC TTCC AGTGCAGGCGTTG GATCTTCACCAGCAA Shewana3_3510 4210623 - 4211093 + | arginine repressor TERM 5155 4211094 - 4211123 + T 86 -7.9 -4.61199 | opp_overlap 4211070 4211099, overlap 4211099 AACTACGCAGAATAA AAAAACAGGTCAG CTTG CTGACCTGTTCTC TTTTATCTGTACGCT TERM 5156 4211118 - 4211099 - T 100 -12.2 -5.88565 | opp_overlap 4211094 4211099 CGCAGAATAAAAAAA CAGGTCAG CTTG CTGACCTG TTCTCTTTTATCTGT TERM 5157 4211099 - 4211118 + T 100 -12.2 -4.06765 | opp_overlap 4211099, overlap 4211094 CGCAGAATAAAAAAA CAGGTCAG CTTG CTGACCTG TTCTCTTTTATCTGT Shewana3_3511 4211949 - 4211317 - | NAD-dependent epimerase/dehydratase TERM 5158 4211685 - 4211705 + g 70 -4.7 -4.59773 | opp_overlap 4211685, overlap 4211669 TTGCCTGTGGCAACA CGGCTAATA GAT TATTGACCG TTTTTGCCACTAAGC Shewana3_3512 4212053 - 4212955 + | transcriptional regulator TERM 5159 4212971 - 4212997 + T 100 -15.2 -3.07307 | opp_overlap 4212971 GCCCACAAACAAAAA CGCACTGAGGCT TTA AGGCTCAGTGCG TTGAGTCGCGGTTTG TERM 5160 4212997 - 4212971 - T 100 -15.2 -5.38054 | opp_overlap 4212971 GCCCACAAACAAAAA CGCACTGAGGCT TTA AGGCTCAGTGCG TTGAGTCGCGGTTTG Shewana3_3513 4213961 - 4213020 - | Dyp-type peroxidase family protein TERM 5161 4214092 - 4214117 + r 100 -13.4 -3.36273 | opp_overlap 4214092 ACTGGAATATAAAAA TTGACGAGGC CATTAC GCCTCGTCAA TTCGTCTTACGCAAG TERM 5162 4214117 - 4214092 - R 100 -13.4 -5.09762 | opp_overlap 4214092 ACTGGAATATAAAAA TTGACGAGGC CATTAC GCCTCGTCAA TTCGTCTTACGCAAG Shewana3_3514 4215880 - 4214168 - | gamma-glutamyltransferase 2 TERM 5163 4214654 - 4214642 - G 71 -6.9 -4.19177 | ATCCTGCAATACAAA GCCGA GAT CCGGC GGCGTCATACCCGAG TERM 5164 4215656 - 4215688 + g 71 -11.3 -2.84218 | gap 1, overlap 4215655 4215652 GCCCAGCATGGCATT GGCGGCAATTGCCG CATCTA CGGCACT-GCCGCC CTGTTTTAATACATC Shewana3_3515 4217069 - 4216020 - | ABC transporter related Shewana3_3516 4218700 - 4217066 - | binding-protein-dependent transport systems inner membrane component TERM 5165 4218225 - 4218215 - G 72 -8.2 -3.86346 | GGATTGCTCCATAAA CGCG GTG CGCG CCAACAGATAAATAT TERM 5166 4218719 - 4218738 + r 100 -10.7 -4.44277 | opp_overlap 4218719 GATCCTTTAACCTAA GTGCGCC AATTAA GGCGCAC TTTTCACTTTTACTA TERM 5167 4218738 - 4218719 - R 79 -10.7 -3.17392 | opp_overlap 4218719 GATCCTTTAACCTAA GTGCGCC AATTAA GGCGCAC TTTTCACTTTTACTA Shewana3_3517 4219785 - 4218778 - | extracellular solute-binding protein TERM 5168 4220397 - 4220354 - g 74 -6.7 -4.32177 | gap 1 TTACGGCATAACAAA GGATCTCTACGGCGCGTTTG GTGAA CATAATCGCCGT-GAGACCC ATAGAGGCCGCCGCT Shewana3_3518 4220004 - 4220426 + | hypothetical protein Shewana3_3519 4221029 - 4220433 - | glutathione S-transferase domain-containing protein Shewana3_3520 4221850 - 4221101 - | oxidoreductase FAD/NAD(P)-binding subunit TERM 5169 4221931 - 4221915 - R 100 -8.7 -5.06414 | overlap 4221916 TCTGCGCAACAAAAA CCCCTTA TTG CAAGGGG CTTAAAACAAGGGAA Shewana3_3521 4222588 - 4221995 - | hypothetical protein Shewana3_3522 4222759 - 4223352 + | phosphoglycerate mutase Shewana3_3523 4223364 - 4224854 + | ferredoxin-dependent glutamate synthase Shewana3_3524 4224999 - 4225205 + | hypothetical protein TERM 5170 4225194 - 4225221 + T 79 -8.6 -4.18644 | opp_overlap 4225196, overlap 4225196 AAGGCTGGAAAACCA AAGGGAATATAA TTTC TTATATTCCCTA TTTCGTTTATCTCAT TERM 5171 4225219 - 4225196 - T 93 -11.2 -4.19735 | opp_overlap 4225196 4225194 GGCTGGAAAACCAAA GGGAATATAA TTTC TTATATTCCC TATTTCGTTTATCTC TERM 5172 4225196 - 4225219 + T 84 -11.2 -3.68007 | opp_overlap 4225196, overlap 4225194 GGCTGGAAAACCAAA GGGAATATAA TTTC TTATATTCCC TATTTCGTTTATCTC Shewana3_3525 4225497 - 4225240 - | hypothetical protein Shewana3_3526 4227376 - 4225580 - | ABC transporter related TERM 5173 4227618 - 4227591 - H 80 -5 -5.10029 | gap 1 ATTAAGGTGAAAAAA TTCTGAAACAAGC TTG GCTT-TATCAGAA CAGTAACCGTTAAAA Shewana3_3527 4227826 - 4228002 + | hypothetical protein TERM 5174 4228009 - 4228033 + T 100 -10.1 -4.87626 | opp_overlap 4228009, overlap 4228013 AAGAAATAATAAAAA TAAAGGCGC CGGGATA GCGCCTTTA TTTTTGATCTTAAAC TERM 5175 4228033 - 4228009 - T 100 -10.8 -5.44198 | opp_overlap 4228009 4228013 AAGAAATAATAAAAA TAAAGGCGCC GGGAT AGCGCCTTTA TTTTTGATCTTAAAC TERM 5176 4228013 - 4228029 + T 84 -6.5 -4.95618 | opp_overlap 4228009, overlap 4228009 AATAATAAAAATAAA GGCGC CGGGATA GCGCC TTTATTTTTGATCTT Shewana3_3528 4229111 - 4228053 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 5177 4228335 - 4228347 + g 70 -3.3 -4.8143 | GATCATTATGTTATC GACCA GCT TGGCC TTTTTCAGTTGTTCG TERM 5178 4229408 - 4229373 - R 100 -4 -5.93252 | gap 1 GCCAAAAATAAAAAA CCTCCTTTGCCAGTAGT CAA ACG-CAAACAAAGGAGG TTGAGTAAAGGATTA Shewana3_3529 4230608 - 4229421 - | TPR repeat-containing protein Shewana3_3530 4231074 - 4230727 - | hypothetical protein TERM 5179 4231124 - 4231142 + r 86 -10.3 -3.88731 | opp_overlap 4231124 AGACCCATAAAAAAA GCAGAGC ACTTG GCTCTGC TTTACTATCCTCTTA TERM 5180 4231142 - 4231124 - R 100 -10.3 -5.65177 | opp_overlap 4231124 AGACCCATAAAAAAA GCAGAGC ACTTG GCTCTGC TTTACTATCCTCTTA Shewana3_3531 4232441 - 4231191 - | Rh family protein/ammonium transporter Shewana3_3532 4232790 - 4232452 - | nitrogen regulatory protein P-II TERM 5181 4232933 - 4232917 - H 75 -5.1 -4.77157 | TTAACCGATTAAAAA TGCACCA GAC TTGTGCA AGCATGAGGGCGACG TERM 5182 4232939 - 4232953 + H 70 -5.6 -4.25848 | opp_overlap 4232938 GACTTGTGCAAGCAT GAGGGC GAC GCACTC TTTTAGTGAGCAATT Shewana3_3533 4233100 - 4233642 + | isochorismatase hydrolase TERM 5183 4233651 - 4233670 + T 70 -7.2 -3.78775 | opp_overlap 4233651 TAAATAAGGTGAGAA GAGAGTTT GTTC AAGCTCTC TTTCGTAATCAAAAC Shewana3_3534 4234413 - 4233679 - | hypothetical protein Shewana3_3535 4235316 - 4234507 - | hypothetical protein Shewana3_3536 4236155 - 4235451 - | lysine exporter protein LysE/YggA TERM 5184 4235879 - 4235869 - G 80 -4.6 -5.08824 | GGTTTACTGAAAAAA GCCA CCG CGGC CTTAAGCGCACCAAA Shewana3_3537 4237097 - 4236267 - | AraC family transcriptional regulator TERM 5185 4237234 - 4237204 - R 100 -14.9 -4.56597 | gap 1, opp_overlap 4237211, overlap 4237206 CGTCCTCCCCAAAAA TG-CAAAACGCCCG AATG CGGGCGTTTTGTCA GATCCAACATGCAGG TERM 5186 4237231 - 4237206 - R 100 -17.7 -2.60032 | opp_overlap 4237211, overlap 4237204 TCCTCCCCAAAAATG CAAAACGCCCG AATG CGGGCGTTTTG TCAGATCCAACATGC TERM 5187 4237211 - 4237226 + r 100 -11.8 -4.4009 | opp_overlap 4237206 4237204 CCCAAAAATGCAAAA CGCCCG AATG CGGGCG TTTTGTCAGATCCAA Shewana3_3538 4237997 - 4237251 - | hypothetical protein TERM 5188 4238066 - 4238103 + r 100 -19.3 -2.93853 | opp_overlap 4238070, overlap 4238070 TTACAGACAGTTAGA TAAATGCCGATGGCAGG ACAG CCCGCCATCGGCATTTG GTTTACTTCGCCGCC TERM 5189 4238099 - 4238070 - R 100 -20.1 -4.0827 | opp_overlap 4238066 4238070 AGACAGTTAGATAAA TGCCGATGGCAGG ACAG CCCGCCATCGGCA TTTGGTTTACTTCGC TERM 5190 4238070 - 4238099 + r 100 -17.9 -4.14598 | opp_overlap 4238070, overlap 4238066 AGACAGTTAGATAAA TGCCGATGGCAGG ACAG CCCGCCATCGGCA TTTGGTTTACTTCGC Shewana3_3539 4239746 - 4238106 - | alkaline phosphatase TERM 5191 4239771 - 4239788 + r 76 -9.9 -3.35467 | opp_overlap 4239768, overlap 4239765 CAAAAGTGAGAACTG TAGGTCG CAAC CGACCTA TTAGTACTTTGTGCC Shewana3_3540 4241285 - 4239789 - | peptidoglycan glycosyltransferase TERM 5192 4240452 - 4240472 + g 100 -9.7 -5.24129 | GTGATCGGTATTGGC GGCATCGAT AGC ATCGAAGCC TTTTTTGTCCCACAC TERM 5193 4241475 - 4241440 - R 100 -17.2 -4.80729 | gap 1 AAACAGAATAGAAAA CGCTAAGTTTATTCTCG TTG CG-GAATAAACTTAGCG TATCGGCTGGTGCTA Shewana3_3541 4243599 - 4241521 - | TonB-dependent receptor TERM 5194 4243586 - 4243598 + g 72 -4.1 -4.8622 | TTTCCTGCTACTGTC TGGAG CGA CTTCA TTTTTCCTTCCCGAG TERM 5195 4243766 - 4243754 - H 79 -7.7 -4.32034 | TTATTATGAGCAAAA GGACA AAA TGTCC GTATCGAGATCACGG TERM 5196 4244580 - 4244564 - g 74 -6.5 -4.43213 | opp_overlap 4244572, overlap 4244565 TCCAACACAGTAAAA TTCACCC CGT GGGTGAG TTGGAGGAACTCATC TERM 5197 4244579 - 4244565 - g 70 -10 -3.25205 | opp_overlap 4244572, overlap 4244564 CCAACACAGTAAAAT TCACCC CGT GGGTGA GTTGGAGGAACTCAT Shewana3_3542 4243942 - 4244742 + | hypothetical protein TERM 5198 4246025 - 4246037 + G 82 -7.7 -4.65895 | overlap 4245997 CCATGTGCCCGTCAT GCTTG GTG CAAGC TTTTTAAATAGCAGC Shewana3_3543 4244988 - 4246967 + | diguanylate cyclase with PAS/PAC sensor TERM 5199 4247239 - 4247217 - g 74 -4.9 -4.80455 | CACCGAAATACAAAA TGATGGC AAAGTGAAA GCCATCA AGGCCTCTATCGAAG Shewana3_3544 4247053 - 4247631 + | cold-shock DNA-binding protein family protein TERM 5200 4247673 - 4247632 - T 100 -21.9 -3.16742 | opp_overlap 4247642, overlap 4247637 4247642 TGTAATGGCTATTAA CGAAATAAAAGCCCCTGTT GGTT AACAGGGGCTTTTACCTCG GATGAAGTGACAGCA TERM 5201 4247668 - 4247637 - T 100 -19 -3.95584 | opp_overlap 4247642, overlap 4247632 4247642 TGGCTATTAACGAAA TAAAAGCCCCTGTT GGTT AACAGGGGCTTTTA CCTCGGATGAAGTGA TERM 5202 4247642 - 4247663 + T 100 -14.5 -4.1899 | opp_overlap 4247642 4247637 4247632 ATTAACGAAATAAAA GCCCCTGTT GGTT AACAGGGGC TTTTACCTCGGATGA TERM 5203 4247663 - 4247642 - T 100 -14.5 -5.00851 | opp_overlap 4247642, overlap 4247637 4247632 ATTAACGAAATAAAA GCCCCTGTT GGTT AACAGGGGC TTTTACCTCGGATGA Shewana3_3545 4252655 - 4247736 - | hypothetical protein TERM 5204 4248236 - 4248246 + g 71 -6.8 -4.24404 | CTTCACTGTCGGCAC CCAC TAA GTGG TTTTCAACTTTGAGT TERM 5205 4253246 - 4253229 - g 77 -10.5 -3.59979 | opp_overlap 4253227 4253224 4253223 CTCGGCGAGCTCAAA GGGGCGA TTGC CCGCCCC TATGGATTAATCGAT Shewana3_3546 4252923 - 4253276 + | hypothetical protein Shewana3_3547 4254862 - 4253372 - | ABC transporter related Shewana3_3548 4255699 - 4254959 - | arginine N-succinyltransferase TERM 5206 4255862 - 4255824 - R 100 -13.3 -2.9062 | opp_overlap 4255829, overlap 4255829 GTGAGGATAGAATGA TAAAAGTCCACCCATGC ACAGG GCACGGATGGACTTATA AGAGCTGAACTCACG TERM 5207 4255829 - 4255857 + r 71 -8.8 -3.30124 | opp_overlap 4255824 4255829 GATAGAATGATAAAA GTCCACCCATGC ACAGG GCACGGATGGAC TTATAAGAGCTGAAC TERM 5208 4255857 - 4255829 - R 100 -13.2 -4.60073 | opp_overlap 4255829, overlap 4255824 GATAGAATGATAAAA GTCCACCCATGC ACAGG GCACGGATGGAC TTATAAGAGCTGAAC Shewana3_3549 4258124 - 4255905 - | catalase/peroxidase HPI TERM 5209 4257877 - 4257896 + g 73 -2.8 -5.0133 | overlap 4257865 4257879 CAATCCTGAGATTCA GTCATCAG GGCT TTGATGTC TTTTTTAACGGCGTC Shewana3_3550 4258507 - 4258758 + | hypothetical protein TERM 5210 4258807 - 4258785 - f 100 -15 -4.57569 | opp_overlap 4258785 CCACTGGCTTAAAAA GGTAAAGCGA TGT TCGCTTTACC TTTATCTCCTGTTCC TERM 5211 4258785 - 4258807 + F 100 -15 -4.13591 | opp_overlap 4258785 CCACTGGCTTAAAAA GGTAAAGCGA TGT TCGCTTTACC TTTATCTCCTGTTCC Shewana3_3551 4258927 - 4259457 + | hypothetical protein Shewana3_3552 4260042 - 4259638 - | 4-carboxymuconolactone decarboxylase TERM 5212 4260138 - 4260187 + r 73 -5.8 -4.57569 | gap 1, opp_overlap 4260149, overlap 4260138 4260149 ATGCTCGAAATCACT G-GCGCAAAAAATGGGTTTATCC CGATT GGATAAACCCATTCAATGCGAAC TTTTTCAAGCGATGA TERM 5213 4260149 - 4260175 + r 100 -13.9 -3.06312 | opp_overlap 4260149, overlap 4260138 4260138 CACTGGCGCAAAAAA TGGGTTTATCC CGATT GGATAAACCCA TTCAATGCGAACTTT TERM 5214 4260175 - 4260149 - R 100 -13.9 -5.0133 | opp_overlap 4260138 4260138 4260149 CACTGGCGCAAAAAA TGGGTTTATCC CGATT GGATAAACCCA TTCAATGCGAACTTT Shewana3_3553 4261216 - 4260233 - | putative nonspecific acid phosphatase precursor TERM 5215 4260725 - 4260743 + g 74 -4.5 -4.76312 | overlap 4260728 CTCTAACATAGGTTG GAACACC ATTTC GGTGTAC TTTTTCCCTGTTGTC Shewana3_3554 4262669 - 4261251 - | hypothetical protein Shewana3_3555 4264387 - 4262666 - | von Willebrand factor, type A Shewana3_3556 4265387 - 4264380 - | von Willebrand factor, type A Shewana3_3557 4265892 - 4265374 - | hypothetical protein Shewana3_3558 4266881 - 4265889 - | hypothetical protein TERM 5216 4266178 - 4266152 - G 73 -3.1 -5.05601 | gap 1, opp_overlap 4266177, overlap 4266154 4266156 GATCAGAGATAAAAA TACA-CAGCACA TCAT TATGCTGCTGCA GGTACTTTAACTGTT Shewana3_3559 4267888 - 4266887 - | ubiquinol--cytochrome-c reductase TERM 5217 4267270 - 4267286 + g 76 -7.9 -4.2828 | TGGTTTGTGGTTTGT CGGCGCT AAA AACGCCG TTTTCCTCACTGCGA Shewana3_3560 4269179 - 4267872 - | radical SAM domain-containing protein TERM 5218 4267985 - 4267996 + g 71 -7.2 -4.07687 | AATTGAGCCCTTCTT CCCC ATCT GGGG TTTTCAGCAGGCGAT TERM 5219 4269195 - 4269224 + H 100 -15.2 -4.32857 | GCAGACTTCCTTGTA TTGGCTGACGTT CAGATA AACGTCAGCCAA TTTCTATTTAAAAAC TERM 5220 4271290 - 4271275 - g 73 -5.4 -4.66537 | opp_overlap 4271275, overlap 4271276 TGCGCCAAGAGAAAA CCGACA TTAT TGTCGA TAGTATGTTGACTCG TERM 5221 4271745 - 4271721 - g 74 -2.1 -5.16038 | opp_overlap 4271744, overlap 4271728 AGAGAAGAAATAAAA GCCAAGATAAA GGC TTTACATAGGC AATAATTGCTAATTC Shewana3_3562 4270905 - 4271750 + | transcriptional regulator TERM 5222 4271798 - 4271774 - f 70 -9.4 -2.77895 | gap 1, overlap 4271773 TCGAGCTTCAACAAT GGGTGTCAATG TAAC CATTG-CACCC GTAAAACACTTCCCA Shewana3_3563 4272109 - 4273395 + | hypothetical protein TERM 5223 4274320 - 4274330 + G 86 -6.8 -4.98531 | CAGAGCCTTAGCCGA CGGT AAA ACCG TTTTTGGTTTCGGAG Shewana3_3564 4273979 - 4274785 + | hypothetical protein TERM 5224 4275404 - 4275391 - g 70 -8.1 -3.70902 | TCGGCCAGAGCTAAA CCAGG TTAT CCTGG AGCTTATCTGTGAAA Shewana3_3565 4274894 - 4276507 + | IS4 family transposase TERM 5225 4277669 - 4277649 - g 73 -3.4 -4.96427 | TAACAAGAAAATAAA TCTATCAA AAAGA TTAATAGA AGAATACACCCATAA Shewana3_3566 4276585 - 4278051 + | hypothetical protein TERM 5226 4278395 - 4278360 - T 100 -17.8 -4.60889 | opp_overlap 4278365, overlap 4278365 AATCAGCGCCAAAAA CAAAACCCCGATACTG TTGC CAGTATCGGGGTTTTT ATTTATAAGAATTTG TERM 5227 4278365 - 4278390 + T 100 -17.7 -5.38054 | opp_overlap 4278360 4278365 GCGCCAAAAACAAAA CCCCGATACTG TTGC CAGTATCGGGG TTTTTATTTATAAGA TERM 5228 4278390 - 4278365 - T 100 -17.7 -5.26119 | opp_overlap 4278365, overlap 4278360 GCGCCAAAAACAAAA CCCCGATACTG TTGC CAGTATCGGGG TTTTTATTTATAAGA groEL 4280190 - 4278553 - | chaperonin GroEL TERM 5229 4278990 - 4279011 + g 84 -2.2 -5.5762 | gap 1, overlap 4278972 4278972 4278970 4278993 CAGCACGAGTTGCGT GCAGCGCGT CTTCT ACGCGA-GC TTTTTTCTCTTTCAT TERM 5230 4279558 - 4279570 + g 73 -9.1 -3.73088 | ATCTAATTCAACGCT GCCAG TTT CTGGC TTGTTGATGAAGTAT groES 4280538 - 4280248 - | co-chaperonin GroES TERM 5231 4280860 - 4280878 + G 88 -3.8 -5.64274 | TTATGACCATTCTAG GTTTTAGC CTC GCTGACAC TTTTTTTATCAGTCA TERM 5232 4282026 - 4282060 + G 71 -7.9 -4.06864 | overlap 4282030 AAAGGCTTGTTGCTC GCGCTCCCCATCA CCAACCTCT TGATGGGGATTGC TTGTTATTATCTGGC Shewana3_3569 4280766 - 4282124 + | MATE efflux family protein Shewana3_3570 4283116 - 4282121 - | LysR family transcriptional regulator TERM 5233 4283685 - 4283663 - g 74 -9.8 -3.61103 | overlap 4283664 CAAGCGCAGCTTAAA TCGGCCAAAG CGG CCTTGGCCGC CGCCCGTGATCAGTT TERM 5234 4283684 - 4283664 - g 79 -13.3 -2.7634 | overlap 4283663 AAGCGCAGCTTAAAT CGGCCAAAG CGG CCTTGGCCG CCGCCCGTGATCAGT Shewana3_3571 4283246 - 4284328 + | RND family efflux transporter MFP subunit TERM 5235 4286330 - 4286314 - g 83 -9.3 -4.32048 | opp_overlap 4286325, overlap 4286308 CAAGAATATGGAAAA CGGCCCG TCT CCGGCCG CGAAGATTGAGGCGC Shewana3_3572 4284332 - 4287415 + | acriflavin resistance protein TERM 5236 4287446 - 4287481 + T 93 -9.8 -4.25681 | gap 1, overlap 4287447 AAACGCTTCCCGGCG TGGCCGATCGATGTGGT ATG ACT-CATCGATTGGCCC TTTCTTCCCTTCAAT TERM 5237 4287447 - 4287480 + T 100 -13.3 -3.14686 | gap 1, overlap 4287446 AACGCTTCCCGGCGT GGCCGATCGATGTGGT ATG ACT-CATCGATTGGCC CTTTCTTCCCTTCAA TERM 5238 4287561 - 4287523 - T 100 -10.5 -5.61881 | opp_overlap 4287525 CCTCAAAAACAAAAA CGCCTAGATTTCATC TTGGTTATC GACAAAATCTAGGCG CAGTAAGGGCGGATG Shewana3_3573 4287973 - 4287593 - | hypothetical protein TERM 5239 4287780 - 4287796 + g 73 -2.9 -4.95155 | overlap 4287779 4287778 TCTTTAGCATCTTTC GCCGT ACGTTCG GCGGC TTTTTCTGGTGTACA TERM 5240 4288106 - 4288073 - R 100 -13.9 -4.8543 | opp_overlap 4288076 CAACGCGCATAAAAA CAAGCTCCCAGAGGT TTGC ACCAGTGGGAGCTTG TAGAATATTGCGTGA TERM 5241 4288076 - 4288103 + r 76 -9.8 -3.3676 | opp_overlap 4288073 CGCGCATAAAAACAA GCTCCCAGAGGT TTGC ACCAGTGGGAGC TTGTAGAATATTGCG Shewana3_3574 4288771 - 4288151 - | FxsA cytoplasmic membrane protein TERM 5242 4288574 - 4288588 + g 78 -5.7 -4.84274 | TTCCTGCCCAGGCGC CTCAC CTCGC GTGAG TTTTTGCTGTACTTG Shewana3_3575 4288995 - 4289318 + | CutA1 divalent ion tolerance protein dipZ 4289315 - 4291156 + | thiol:disulfide interchange protein precursor TERM 5243 4291213 - 4291238 + F 100 -12 -5.252 | opp_overlap 4291213 TAAAACCAATAAAAA GCGGACTTTT TTCATT AAAAGTCCGC TTTTTTATCACGCTG TERM 5244 4291238 - 4291213 - f 100 -12 -5.28166 | opp_overlap 4291213 TAAAACCAATAAAAA GCGGACTTTT TTCATT AAAAGTCCGC TTTTTTATCACGCTG TERM 5245 4291755 - 4291774 + G 79 -6.5 -4.63928 | CCGTGTCGCCATTGG TATCCTG ATTATG CAGGATA TTTTTGCCGTCATCT Shewana3_3577 4291309 - 4292952 + | sodium/hydrogen exchanger TERM 5246 4293065 - 4293031 - f 84 -11.5 -3.19192 | opp_overlap 4293032 TCTTATTTAAGCTAA TGTTGGCTCAGGAAA GCAAA CCTCCTGAGCCAACT TATTTCTCACCTCAA TERM 5247 4293032 - 4293064 + F 100 -13.6 -4.07877 | opp_overlap 4293031 CTTATTTAAGCTAAT GTTGGCTCAGGA AAGCAAACC TCCTGAGCCAAC TTATTTCTCACCTCA Shewana3_3578 4293280 - 4294425 + | galactokinase TERM 5248 4294454 - 4294501 + F 93 -8.9 -4.56597 | gap 2, opp_overlap 4294462, overlap 4294458 4294462 CTCTATCCATTCTTC CAGACAAATACCATACGAATTCA ACCT TGAATCC-TATGGTATTTGT-TG TTTTTAAGAGGCAAA TERM 5249 4294458 - 4294498 + F 100 -10.8 -4.40561 | gap 1, opp_overlap 4294462, overlap 4294454 4294462 ATCCATTCTTCCAGA CAAATACCATACGAATTCA ACCT TGAATCC-TATGGTATTTG TTGTTTTTAAGAGGC TERM 5250 4294494 - 4294462 - f 74 -8 -4.03413 | gap 1, opp_overlap 4294462 4294458 4294454 ATTCTTCCAGACAAA TACCATACGAATTCA ACCT TGAATCC-TATGGTA TTTGTTGTTTTTAAG TERM 5251 4294462 - 4294494 + F 78 -5.8 -4.76802 | gap 1, opp_overlap 4294462, overlap 4294458 4294454 ATTCTTCCAGACAAA TACCATACGAATTCA ACCT TGAATCC-TATGGTA TTTGTTGTTTTTAAG Shewana3_3579 4294551 - 4295582 + | aldose 1-epimerase TERM 5252 4295661 - 4295628 - T 73 -5.6 -4.53774 | gap 2, overlap 4295629 4295630 ATAAAGGAAGGAAAA GCTGGTAAGGAATAAA GTGG TTTATTCCTTACC--C TAACCCAATTTGCAC TERM 5253 4295661 - 4295630 - T 83 -11.8 -2.57298 | overlap 4295628 4295629 AAAGGAAGGAAAAGC TGGTAAGGAATAAA GTGG TTTATTCCTTACCC TAACCCAATTTGCAC Shewana3_3580 4296096 - 4295692 - | hypothetical protein TERM 5254 4296120 - 4296134 + r 73 -2.8 -5.22312 | opp_overlap 4296120 4296122, overlap 4296122 ATACCCTTAAATCAA CACATA CAC TATGAG TTTTTTAGTCTGAAT TERM 5255 4296362 - 4296389 + r 71 -9.8 -2.64274 | overlap 4296361 4296360 GTTTTAATTCGGTTG CCCGCCTCCATC AAAG GATTGAGGCGAG TGCGTTTACACAGAT Shewana3_3581 4297417 - 4296419 - | response regulator receiver protein Shewana3_3582 4299368 - 4297593 - | hypothetical protein TERM 5256 4297818 - 4297853 + g 80 -9.6 -4.09243 | AACCACTTTTTCGAG CCAGGTACGCGCTTTG TGCG CATCGCGCGTATCGGG TTTTAACAGAATATC TERM 5257 4298857 - 4298847 - G 86 -6.8 -4.90778 | CTGACTCAAATAAAA CCCA TCA TGGG GTGAGGCTTTAGTCG Shewana3_3583 4300823 - 4299462 - | serine/threonine protein kinase TERM 5258 4302241 - 4302223 - g 74 -7.4 -4.24002 | overlap 4302216 4302224 CGGCAAAGGCTAAAA CCAGCAGT AAA ACCGCTGA CAAGCCCACCGCGAA Shewana3_3584 4300980 - 4302404 + | MltD domain-containing protein TERM 5259 4302441 - 4302424 - T 100 -9.9 -4.87626 | opp_overlap 4302424 GGCTAAGACGAAAAA GCACTAC CAAG GTAGTGC TTTTTTATTGCCCTA TERM 5260 4302424 - 4302441 + T 100 -9.9 -5.46657 | opp_overlap 4302424 GGCTAAGACGAAAAA GCACTAC CAAG GTAGTGC TTTTTTATTGCCCTA Shewana3_3585 4303843 - 4302470 - | hypothetical protein Shewana3_3586 4305259 - 4304294 - | DNA-binding transcriptional regulator YidZ Shewana3_3587 4306424 - 4305234 - | multidrug efflux system protein MdtL TERM 5261 4306579 - 4306552 - R 100 -12.8 -4.33854 | ATCAATAAAACCAAA CCTCCTGTGAAA CGAG TATCACAGGAGG GAGATCTTCAAAGGG Shewana3_3588 4309442 - 4306611 - | peptidase M16 domain-containing protein TERM 5262 4308297 - 4308339 + g 71 -7.1 -4.26327 | gap 2, overlap 4308294 ACCAAATTCCAGCGC CTGAC-GCAAGG-TTTGCTCT AAT AGTGCAAGTCCTTGCTGCCAG TTGTTTTCCTGCGTC TERM 5263 4309242 - 4309255 + g 70 -2.3 -5.00196 | opp_overlap 4309241 4309242 CATACGGACGATAAC CGCCT GTTC AGGGG TTTTATTGTTTACCA TERM 5264 4309702 - 4309720 + r 100 -8.9 -4.80959 | opp_overlap 4309702 ATTGGCAATTCAGAA CAGGCTT AATTA AAGCCTG TTTTATTCTAAATTA TERM 5265 4309720 - 4309702 - R 73 -8.9 -3.42056 | opp_overlap 4309702 ATTGGCAATTCAGAA CAGGCTT AATTA AAGCCTG TTTTATTCTAAATTA Shewana3_3589 4310326 - 4309733 - | hypothetical protein TERM 5266 4310327 - 4310337 + r 73 -5.4 -4.73614 | opp_overlap 4310319, overlap 4310319 TATTACATCTTCCAT GGAA GAA TTCC TTTCTTTTAGTAGTA TERM 5267 4310511 - 4310490 - R 100 -10.9 -5.4433 | gap 1, opp_overlap 4310490 ATATATAAACAAAAA GCCCTGCACA ATA TG-GCAGGGC TTTTAAAAAACGATT TERM 5268 4310490 - 4310511 + r 93 -10.9 -4.08064 | gap 1, opp_overlap 4310490 ATATATAAACAAAAA GCCCTGCACA ATA TG-GCAGGGC TTTTAAAAAACGATT Shewana3_3590 4311258 - 4310551 - | single-strand binding protein Shewana3_3591 4312733 - 4311366 - | major facilitator transporter TERM 5269 4311865 - 4311845 - G 74 -3.9 -5.00616 | overlap 4311847 GGTTGTTCGAAAAAA TCGCCATCG CCG CAAGGGCAA ACATCATGATCACTA TERM 5270 4312537 - 4312526 - G 71 -5.8 -4.37092 | ACTTGTCGGATAAAA TCCC CATA GGGA TCTGCAAAACGGCCT TERM 5271 4313903 - 4313913 + G 70 -8.2 -3.67597 | GCAAATTTTGCCTGT CCGC ACT GCGG TTATTCGATGGCAGA Shewana3_3592 4313144 - 4315996 + | excinuclease ABC subunit A TERM 5272 4316012 - 4316034 + F 83 -11.3 -2.90392 | TATAAAGTGTCAGTA GTGCCTTGG TATCT CCAAGGCGC TGTAATTACACCCTA Shewana3_3593 4316105 - 4316446 + | hypothetical protein Shewana3_3594 4316530 - 4317570 + | peptidase M28 Shewana3_3595 4317768 - 4319627 + | DEAD/DEAH box helicase domain-containing protein TERM 5273 4319704 - 4319671 - f 70 -9.7 -2.56231 | opp_overlap 4319674 4319681, overlap 4319681 AGATTTAAACAAACG CATTAAAAAAGGAGC CTAG GCTCCTTTTTTGTTG TCTTAAAATCACTCA TERM 5274 4319674 - 4319701 + F 93 -12.2 -3.67611 | opp_overlap 4319671 4319681, overlap 4319681 TTTAAACAAACGCAT TAAAAAAGGAGC CTAG GCTCCTTTTTTG TTGTCTTAAAATCAC TERM 5275 4319694 - 4319681 - f 95 -8.1 -5.19261 | opp_overlap 4319674 4319681, overlap 4319671 AAACGCATTAAAAAA GGAGC CTAG GCTCC TTTTTTGTTGTCTTA TERM 5276 4319681 - 4319694 + F 100 -8.1 -5.64304 | opp_overlap 4319681 4319671, overlap 4319674 AAACGCATTAAAAAA GGAGC CTAG GCTCC TTTTTTGTTGTCTTA Shewana3_3596 4320013 - 4320384 + | hypothetical protein TERM 5277 4320403 - 4320434 + T 73 -10.1 -3.02511 | opp_overlap 4320397 CACTAGATACTGTAA TGGGCTTGCAAGC ACTGTG GCCAGCAAGCCCA TATTGCAACGATAAA Shewana3_3597 4321646 - 4320450 - | major facilitator transporter TERM 5278 4321184 - 4321170 - G 76 -6.4 -4.62872 | overlap 4321172 AGCAACGGCTAAAAA GGTTGA TTG CCAACC AAAACTCTGGCCGAT TERM 5279 4322661 - 4322674 + G 80 -9.5 -4.08689 | CCTCAACCGTAGCTC GGCGG ATCT CCGCC TTTATCGATTTTATT Shewana3_3598 4321829 - 4322710 + | LysR family transcriptional regulator Shewana3_3599 4322843 - 4323685 + | aldo/keto reductase Shewana3_3600 4324322 - 4323702 - | HAD family hydrolase TERM 5280 4324075 - 4324059 - G 70 -4.3 -4.59773 | CCGCATCTTTAAAAA CGCAATC AGC GCCTGCG CCCCTTCAATCCAGC Shewana3_3601 4325320 - 4324331 - | hypothetical protein TERM 5281 4324545 - 4324526 - G 78 -10 -3.84451 | overlap 4324528 GGCGCTAAAGCTAAA TACTGGCG TTAA CGCCAGCA TGGCGCTCACCTGCG TERM 5282 4324543 - 4324528 - G 77 -10.4 -3.50832 | overlap 4324526 CGCTAAAGCTAAATA CTGGCG TTAA CGCCAG CATGGCGCTCACCTG Shewana3_3602 4325639 - 4326454 + | hydratase/decarboxylase family protein TERM 5283 4326516 - 4326493 - f 78 -9.6 -3.57418 | opp_overlap 4326496, overlap 4326496 TAGCCAGCAAAGTAA GAAGGTAGGC AAAG GCTTACCTTC TAAAATCCCCAGAGT Shewana3_3603 4326613 - 4327728 + | TonB family protein TERM 5284 4327771 - 4327798 + T 100 -12.8 -5.1523 | CTCGACCTCATATCC CAGCCCATCG CCTAATCC CGATGGGCTG TTTTTATCTTCTGAA Shewana3_3604 4328112 - 4327753 - | hypothetical protein Shewana3_3605 4329695 - 4329321 - | hypothetical protein TERM 5285 4329765 - 4329745 - R 73 -5.4 -4.63218 | overlap 4329746 GCTCTTCTAATAAAA CCCAACCC GAATA GAGTTGGA CATGGGGATAAATGA TERM 5286 4330270 - 4330243 - R 88 -12.6 -2.65264 | TGATTAGCGAGACGA CCGTCCGCCCCA AGGA CGGGGCGGTCGA GCATCCACGGATGGA TERM 5287 4330446 - 4330471 + r 88 -9.8 -4.1399 | gap 1, opp_overlap 4330446 TTACCCAATAAAAAA GCCAGCAAAGC TAAAT GCTT-GCTGGC TTTCTGTCTAACTAA TERM 5288 4330471 - 4330446 - R 100 -9.8 -5.4833 | gap 1, opp_overlap 4330446 TTACCCAATAAAAAA GCCAGCAAAGC TAAAT GCTT-GCTGGC TTTCTGTCTAACTAA Shewana3_3606 4331589 - 4330531 - | cytochrome c family protein Shewana3_3607 4332226 - 4331600 - | cytochrome c family protein Shewana3_3608 4333444 - 4332416 - | response regulator receiver protein Shewana3_3609 4334519 - 4333461 - | secretion protein HlyD family protein TERM 5289 4334323 - 4334311 - G 77 -9.1 -4.00934 | ACTTGAAACAGTAAA TCGCC CTT GGCGA CCACTTGGTTATTCT TERM 5290 4334545 - 4334570 + r 71 -9.1 -3.39595 | gap 1, overlap 4334546 ACTCAAGAATTTCTG TGCTCTTAGCCA ACT TGGCTAAG-GCG TTATCACTGATTAGG TERM 5291 4334546 - 4334569 + r 74 -10.4 -2.63435 | gap 1, overlap 4334545 CTCAAGAATTTCTGT GCTCTTAGCCA ACT TGGCTAAG-GC GTTATCACTGATTAG Shewana3_3610 4335004 - 4334528 - | MarR family transcriptional regulator TERM 5292 4335012 - 4335062 + H 74 -10.1 -3.14132 | opp_overlap 4335061, overlap 4335014 4335016 TGCATCATGCTTACT CATTTACTTAGCCTGCTAA GCATTATACTTAG TTAGCAGGCTAAGTAAATA TTCGTCACGAAAAAA TERM 5293 4335014 - 4335060 + H 93 -12.7 -3.13403 | overlap 4335012 4335016 CATCATGCTTACTCA TTTACTTAGCCTGCTAA GCATTATACTTAG TTAGCAGGCTAAGTAAA TATTCGTCACGAAAA TERM 5294 4335672 - 4335656 - g 74 -4.3 -4.75308 | overlap 4335659 ACTAACACGCAAAAA CAACCGC TTA GCGGCTT AGAATATGGAGTGGA TERM 5295 4335669 - 4335659 - g 82 -8.2 -4.47118 | overlap 4335656 AACACGCAAAAACAA CCGC TTA GCGG CTTAGAATATGGAGT Shewana3_3611 4335221 - 4337125 + | methyl-accepting chemotaxis sensory transducer TERM 5296 4337188 - 4337161 - T 100 -12.8 -4.7078 | opp_overlap 4337166, overlap 4337166 GGAATTAGCCAAAAA CAAAACGCCGCT CAGT AGCGGCGTTTTT ATGGATGTTGACTGC TERM 5297 4337183 - 4337166 - T 100 -12.7 -5.2853 | opp_overlap 4337166, overlap 4337161 TAGCCAAAAACAAAA CGCCGCT CAGT AGCGGCG TTTTTATGGATGTTG TERM 5298 4337166 - 4337183 + T 100 -12.7 -4.91459 | opp_overlap 4337161 4337166 TAGCCAAAAACAAAA CGCCGCT CAGT AGCGGCG TTTTTATGGATGTTG metF 4338098 - 4337205 - | 5,10-methylenetetrahydrofolate reductase TERM 5299 4337845 - 4337861 + g 73 -5.1 -4.68424 | GTTAAATGCGGCGCG GCAACCA GAT TGGTTTC TTTTTGAATACGTTC TERM 5300 4338326 - 4338311 - R 91 -6.8 -5.4833 | opp_overlap 4338311 TTAGCCAACAAAAAA GGACTC GAAT GAGCCC TTTAAGTCTATGAAT metL 4340794 - 4338401 - | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 5301 4340829 - 4340816 - R 74 -9.5 -3.35679 | TTCCTCTACTGACAA GCCGC GACG GCGGC CAATCCTGCTTGAAT Shewana3_3614 4341987 - 4340806 - | cystathionine gamma-synthase Shewana3_3615 4342192 - 4342506 + | transcriptional repressor protein MetJ TERM 5302 4342543 - 4342593 + F 77 -3.5 -5.13722 | gap 1 GCCGTAACTAATTAT TAGGGATCGTTAATACTCATCT TGCCTGAT GGGTTAG-AGTAACGATCCCTA TTTTGTTTTGATGGA TERM 5303 4343041 - 4343067 + G 100 -10.8 -4.63932 | overlap 4343042 TCTTCGGTAATATTG CCGCCATTGGTG GTC CGCCGATGGCGA TTTTGTTAGCGGGTA TERM 5304 4343042 - 4343066 + G 88 -14.3 -3.37877 | overlap 4343041 CTTCGGTAATATTGC CGCCATTGGTG GTC CGCCGATGGCG ATTTTGTTAGCGGGT Shewana3_3616 4342614 - 4343357 + | hypothetical protein TERM 5305 4343422 - 4343407 - T 100 -10.4 -5.24129 | opp_overlap 4343407 TGCCGCCATAAAAAA GCACCG TTAC CGGTGC TTTTTGCTTGCAGGG TERM 5306 4343407 - 4343422 + T 100 -10.4 -4.8622 | opp_overlap 4343407 TGCCGCCATAAAAAA GCACCG TTAC CGGTGC TTTTTGCTTGCAGGG Shewana3_3617 4344424 - 4343480 - | polysulphide reductase, NrfD TERM 5307 4344058 - 4344042 - G 76 -2.9 -5.17353 | ATAGGCACTAAAAAA CCTAAGC CCC ACTTTGG CAGTTCGTCACGCAG TERM 5308 4344242 - 4344229 - G 70 -8.1 -3.66874 | CCAAGCCTAGGCAAA TGGCC ACAG GGCCA ATAATGGCGGCGGCC Shewana3_3618 4344993 - 4344427 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_3619 4347300 - 4345006 - | molybdopterin oxidoreductase Shewana3_3620 4348306 - 4347680 - | pentapeptide repeat-containing protein TERM 5309 4348277 - 4348290 + g 73 -5.2 -4.72846 | CTCGGAGGCGGCGCG CGCC ATCATC GGCG TTTTTACATCTGTCA TERM 5310 4348957 - 4348927 - g 80 -2.7 -5.29445 | gap 2 GGTCAATAATAAAAA GGTG-GCA-AAGC ATTTACG GCTTATGCACACC GCAACGAATAAAAAA Shewana3_3621 4348712 - 4349023 + | hypothetical protein Shewana3_3622 4349010 - 4350113 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 5311 4350154 - 4350181 + F 100 -11.4 -4.60041 | opp_overlap 4350161, overlap 4350161 ACCCTCAACCTAAAT TGAAAAAGGCGC TTAG GCGCCTTTTTTG TTTTTCAAACTGGGT TERM 5312 4350174 - 4350161 - f 100 -9.5 -4.81851 | opp_overlap 4350161 4350154 ACCTAAATTGAAAAA GGCGC TTAG GCGCC TTTTTTGTTTTTCAA TERM 5313 4350161 - 4350174 + F 100 -9.5 -5.93252 | opp_overlap 4350161, overlap 4350154 ACCTAAATTGAAAAA GGCGC TTAG GCGCC TTTTTTGTTTTTCAA TERM 5314 4350270 - 4350248 - f 74 -7.6 -4.00882 | TAAGACAAGATCAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAGGAGGACT TERM 5315 4350346 - 4350336 - f 73 -8.2 -3.6215 | opp_overlap 4350335 4350326 4350336 CCAACGGAGTTGAAA GCCC CTT GGGC ATTTAGCGTCCTTAT TERM 5316 4350464 - 4350441 - f 71 -8.9 -3.29739 | gap 1, opp_overlap 4350463 CGCAACGGACACCAA TCCCCTGCGG CAACT CCG-AGGGGA GGTGAACTTCTCTTA TERM 5317 4350589 - 4350601 + F 89 -3.5 -5.64304 | overlap 4350587 4350594 ATGATAATTTCCATT TATTT TAA AAATA TTTTTTATTCTCTTA Shewana3_3623 4350651 - 4351577 + | hypothetical protein TERM 5318 4351879 - 4351868 - T 75 -5.8 -4.63218 | GGGCGCTGAAGAAAA TCGC GTGA GCGA GGCATGGATGCCGAG TERM 5319 4352008 - 4352028 + T 72 -6.1 -4.27617 | opp_overlap 4352008 GGGGGATTTCCAAAA GGGGAACAG GCG TTTTTCCCC TTTTGGTCGGGTGTG TERM 5320 4352038 - 4352060 + T 74 -7.6 -3.91911 | TTCCCCTTTTGGTCG GGTGTGGGGT GAA GCCCCACGAC TTTGATTCACCTCGG TERM 5321 4353260 - 4353237 - T 100 -12.4 -5.04175 | CCAAGCATATAAAAA TGGGCTGCTC AGTT GAGCGGCCCA TTGCGATAGAGAGCC Shewana3_3626 4354003 - 4353293 - | hypothetical protein TERM 5322 4354181 - 4354191 + H 73 -2.6 -5.08824 | ATAAAAAGGGTTAAT TTTT TTG AAAA TTTTTTAAATCGGCG Shewana3_3627 4354424 - 4355866 + | MiaB-like tRNA modifying enzyme YliG TERM 5323 4355985 - 4355930 - T 100 -16.7 -4.72986 | gap 2, opp_overlap 4355938, overlap 4355938 TAGCCGGATTAAAAA CAT-AAATAGCGAGCCCTTGA-TATTA ATAC TAATAGTCAAGGGCTCGCTTTTTTATG GGCAATCGTTACCAG TERM 5324 4355976 - 4355938 - T 100 -18.5 -3.87576 | gap 1, opp_overlap 4355938, overlap 4355930 TTAAAAACATAAATA GCGAGCCCTTGA-TATTA ATAC TAATAGTCAAGGGCTCGC TTTTTTATGGGCAAT TERM 5325 4355938 - 4355976 + T 100 -18.5 -5.24531 | gap 1, opp_overlap 4355938 4355930 TTAAAAACATAAATA GCGAGCCCTTGA-TATTA ATAC TAATAGTCAAGGGCTCGC TTTTTTATGGGCAAT Shewana3_3628 4356396 - 4356139 - | hypothetical protein TERM 5326 4356239 - 4356199 - G 75 -9.1 -3.89614 | gap 1, opp_overlap 4356200 4356201, overlap 4356200 GGCAAGCCCCATAAA GTCGAAAGGGGTATC-GC CCCTGT GCTGATACCCCTTTCGGT TTGCTGCTTTACGGT TERM 5327 4356238 - 4356200 - G 78 -12.6 -2.93447 | gap 1, opp_overlap 4356200 4356201, overlap 4356199 GCAAGCCCCATAAAG TCGAAAGGGGTATC-GC CCCTGT GCTGATACCCCTTTCGG TTTGCTGCTTTACGG TERM 5328 4356200 - 4356238 + g 95 -14.8 -3.8901 | gap 1, opp_overlap 4356200 4356199, overlap 4356201 GCAAGCCCCATAAAG TCGAAAGGGGTATC-GC CCCTGT GCTGATACCCCTTTCGG TTTGCTGCTTTACGG TERM 5329 4356201 - 4356237 + g 90 -16.1 -2.92924 | gap 1, opp_overlap 4356200 4356199, overlap 4356200 CAAGCCCCATAAAGT CGAAAGGGGTATC-GC CCCTGT GCTGATACCCCTTTCG GTTTGCTGCTTTACG TERM 5330 4357341 - 4357321 - g 83 -3.2 -5.40072 | overlap 4357322 GGTTTTCGAAAAAAA GCCGCC ATTTTCGCG GGCAGC ATAACCCCAATTACC Shewana3_3629 4356651 - 4357496 + | hypothetical protein TERM 5331 4358605 - 4358591 - g 90 -6.4 -5.26316 | overlap 4358593 TCACCCCAGAAAAAA TCGGCA AGA TGCCAA TGAATACAGAGGGTC TERM 5332 4358920 - 4358906 - g 70 -10 -3.1978 | overlap 4358904 AGGCTTACAGCAATA TGCCCA TGA TGGGCA TGCCGAATGTGGATG Shewana3_3630 4357678 - 4359819 + | TonB-dependent receptor TERM 5333 4359873 - 4359906 + T 100 -15.5 -3.58269 | opp_overlap 4359878, overlap 4359878 CGGCGCAATTAAAGC AAAAAGGGCAAATGC ATTA GCATTTGCCCTTTTG TTTAAAGCTCACTTG TERM 5334 4359901 - 4359878 - T 100 -15.4 -5.04222 | opp_overlap 4359878 4359873 CAATTAAAGCAAAAA GGGCAAATGC ATTA GCATTTGCCC TTTTGTTTAAAGCTC TERM 5335 4359878 - 4359901 + T 100 -15.4 -4.87803 | opp_overlap 4359878, overlap 4359873 CAATTAAAGCAAAAA GGGCAAATGC ATTA GCATTTGCCC TTTTGTTTAAAGCTC Shewana3_3631 4361308 - 4359965 - | microcin-processing peptidase 1 TERM 5336 4360152 - 4360137 - G 81 -6 -4.96848 | overlap 4360138 TTTTCCACATAAAAA CCGGCG GCGC CGCGGG AATAATCCCCCGTTA Shewana3_3632 4361484 - 4362017 + | hypothetical protein Shewana3_3633 4362046 - 4364535 + | Ig domain-containing protein TERM 5337 4364540 - 4364567 + T 95 -12.8 -2.954 | opp_overlap 4364540 4364545, overlap 4364545 CTACACTGTAAAAAC CAAAAGACCCGC AACT GCGGGTCTTTTA CTTTCTAGCTCAATC TERM 5338 4364567 - 4364540 - T 100 -15 -3.38378 | opp_overlap 4364540 4364545, overlap 4364545 CTACACTGTAAAAAC CAAAAGACCCGC AACT GCGGGTCTTTTA CTTTCTAGCTCAATC TERM 5339 4364545 - 4364562 + T 100 -12.7 -4.62475 | opp_overlap 4364540 4364545, overlap 4364540 CTGTAAAAACCAAAA GACCCGC AACT GCGGGTC TTTTACTTTCTAGCT TERM 5340 4364562 - 4364545 - T 100 -12.7 -4.77757 | opp_overlap 4364545 4364540, overlap 4364540 CTGTAAAAACCAAAA GACCCGC AACT GCGGGTC TTTTACTTTCTAGCT Shewana3_3634 4365920 - 4364589 - | amino acid permease-associated region TERM 5341 4366140 - 4366104 - H 100 -12.5 -5.07275 | opp_overlap 4366109, overlap 4366109 CTATACACACAAAAA GAAAATAACCGGGATAC TGA ATACCCCGGTTATTTTT GCGGCGCGCATTCTC TERM 5342 4366135 - 4366109 - H 100 -12.4 -5.38839 | opp_overlap 4366109, overlap 4366104 CACACAAAAAGAAAA TAACCGGGATAC TGA ATACCCCGGTTA TTTTTGCGGCGCGCA TERM 5343 4366109 - 4366135 + H 95 -9.5 -4.56597 | opp_overlap 4366109 4366104 CACACAAAAAGAAAA TAACCGGGATA CTGAA TACCCCGGTTA TTTTTGCGGCGCGCA TERM 5344 4366291 - 4366277 - H 70 -7.2 -3.90048 | opp_overlap 4366277, overlap 4366275 CTTCGCTTAAAAAGA GTACAA ATT TTGTAC TTATCTATGTGAGTT TERM 5345 4366816 - 4366826 + G 79 -6.8 -4.60797 | opp_overlap 4366816 AAAGTCTCAGGCAAA TCGG CAA CCGA TTTTGTATATGGCGG Shewana3_3635 4366444 - 4366983 + | hypothetical protein TERM 5346 4367010 - 4367038 + T 100 -6 -6.34424 | overlap 4367008 4367011 CCCTCATTATTTTCT TGGAGTACCTAG TTTAT TTGGGTACTCCC TTTTTTTTTTAAACA TERM 5347 4367011 - 4367037 + T 88 -9.5 -4.39028 | overlap 4367008 4367010 CCTCATTATTTTCTT GGAGTACCTAG TTTAT TTGGGTACTCC CTTTTTTTTTTAAAC Shewana3_3636 4367530 - 4367129 - | hypothetical protein TERM 5348 4367575 - 4367560 - R 86 -3.2 -5.626 | overlap 4367561 GATGCGATAAAAAAA TGAAGC AACT GCTTCG AAATTAAACGGCCCC TERM 5349 4367579 - 4367597 + r 86 -6.8 -5.00616 | opp_overlap 4367579 GCAACTGCTTCGAAA TTAAACGG CCC CTGTTTAA TTTTTTGCCGGACGA Shewana3_3637 4368850 - 4367699 - | hypothetical protein Shewana3_3638 4370147 - 4368852 - | ABC-2 type transporter Shewana3_3639 4371127 - 4370153 - | secretion protein HlyD family protein TERM 5350 4370580 - 4370590 + g 74 -8.2 -4.05788 | overlap 4370578 ATGCGAGCATTACCC GCCG CAG CGGC TTTGGTTTCGACCCG TERM 5351 4370795 - 4370825 + g 73 -8.8 -3.66286 | overlap 4370796 4370819 GAGCCATTGTTCCTT AGCCGCCCTCACCT CTT GGGTGCGGGCGCCG TTATTCGCCTCCTGT TERM 5352 4370796 - 4370824 + g 74 -12.3 -2.79289 | overlap 4370795 4370819 AGCCATTGTTCCTTA GCCGCCCTCACCT CTT GGGTGCGGGCGCC GTTATTCGCCTCCTG Shewana3_3640 4372586 - 4371117 - | outer membrane efflux protein Shewana3_3641 4374142 - 4372649 - | microcin-processing peptidase 2 TERM 5353 4373673 - 4373694 + g 84 -2.3 -5.57054 | gap 1, overlap 4373658 4373657 CTGCGGATATAGGCA TCGGCCT-CT TTC AGCAGGTTGA TTTTTTTCACTTCTT Shewana3_3642 4375016 - 4374222 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Shewana3_3643 4379247 - 4374994 - | hypothetical protein Shewana3_3644 4380755 - 4379247 - | ribonuclease G Shewana3_3645 4381475 - 4380891 - | maf protein Shewana3_3646 4381966 - 4381478 - | rod shape-determining protein MreD Shewana3_3647 4383027 - 4381966 - | rod shape-determining protein MreC TERM 5354 4383055 - 4383039 - R 74 -9.4 -3.32159 | overlap 4383034 TCATAGGAAAGCTAA GGCGGT GATTA ACCGCC CCATACCGAAGTTAG Shewana3_3648 4384121 - 4383072 - | rod shape-determining protein MreB TERM 5355 4384217 - 4384231 + r 85 -2.1 -5.79526 | CGTTGAGGTTAACAA TCGCT AATGG AGTGA TTTTTTTTCAAATGT TERM 5356 4384431 - 4384400 - R 86 -8.8 -4.28548 | ACCGAGTGAGTAAAA TAAGTCAGCAGCGA TAAA TCACCACTGACTCA TTCCAATTCAGCAAA Shewana3_3649 4388211 - 4384465 - | MSHA biogenesis protein MshQ TERM 5357 4385024 - 4385013 - G 76 -5.8 -4.72846 | CCACATAGCTAAAAA GTCC ATTT GGAC GAGGATCGTTATCCA TERM 5358 4386747 - 4386785 + g 100 -15.4 -4.38712 | TATTACGCTCAACCT TCACTATCGACTTACCGG ATA CCTGCGAGTCGATAGTGA TTTTATAGCGGTGCG Shewana3_3650 4388698 - 4388240 - | MSHA biogenesis protein MshP TERM 5359 4388603 - 4388591 - G 76 -2.7 -5.06414 | GGCGGCCAATAAAAA CATCA CGG TAATG ACAAAAATACCTATG Shewana3_3651 4389551 - 4388688 - | methylation site containing protein Shewana3_3652 4390126 - 4389551 - | methylation site containing protein Shewana3_3653 4390604 - 4390116 - | methylation site containing protein TERM 5360 4390786 - 4390802 + r 100 -13.7 -4.25848 | opp_overlap 4390786 CTGACCTAAAAAAAA GGCCTGC TAG GCAGGCC TTTTAATGGAAAATT TERM 5361 4390802 - 4390786 - R 100 -13.7 -5.81412 | opp_overlap 4390786 CTGACCTAAAAAAAA GGCCTGC TAG GCAGGCC TTTTAATGGAAAATT Shewana3_3655 4392724 - 4391111 - | IS4 family transposase TERM 5362 4392214 - 4392227 + g 70 -8.1 -3.70902 | TTTCACAGATAAGCT CCAGG ATAA CCTGG TTTAGCTCTGGCCGA Shewana3_3656 4393579 - 4393070 - | methylation site containing protein Shewana3_3657 4394249 - 4393632 - | methylation site containing protein TERM 5363 4394355 - 4394345 - R 79 -3.2 -5.40474 | overlap 4394348 AGTTCGTCAAAAAAA TGAC CCT GCCA GAGTTTAGTTGATAG Shewana3_3658 4394822 - 4394325 - | hypothetical protein TERM 5364 4394531 - 4394568 + g 79 -8.5 -4.3534 | GCGGCCATCCCTGCG CGCTCATGATCACCAGC GTTT GCTGCTCATTATGAGTG TTTTGCTCATTAAAC Shewana3_3659 4396081 - 4394861 - | type II secretion system protein Shewana3_3660 4397844 - 4396084 - | type II secretion system protein E Shewana3_3661 4399184 - 4397841 - | TPR repeat-containing protein Shewana3_3662 4400110 - 4399181 - | MSHA biogenesis protein MshM Shewana3_3663 4401802 - 4400117 - | pilus (MSHA type) biogenesis protein MshL Shewana3_3664 4402134 - 4401817 - | MSHA biogenesis protein MshK Shewana3_3665 4402771 - 4402121 - | MSHA biogenesis protein MshJ TERM 5365 4402313 - 4402328 + g 76 -3.2 -5.0916 | CATGCGTATTCCATG GCTGTA GAGA TTCAGC TTTTTCTCTTCACCC Shewana3_3666 4403370 - 4402768 - | fimbrial assembly family protein Shewana3_3667 4404245 - 4403367 - | biogenesis protein MshI Shewana3_3668 4406394 - 4404484 - | regulatory protein CsrD TERM 5366 4406346 - 4406364 + g 73 -6.1 -4.54821 | opp_overlap 4406346 4406350 TAGCGGCCAAGGACA TTAACCA AAAAC TGGTTAA TTTTGTAGTTAACAT TERM 5367 4406481 - 4406457 - R 73 -5.8 -4.47183 | CACGAGTTAAACAAA TGCTACTCAA GATTA TTCAGTAGCA TAAGCCAAAAGGCAA TERM 5368 4406584 - 4406569 - R 100 -9 -5.95286 | opp_overlap 4406569 AGTAAAAACAAAAAA GAGGCT AATT AGCCTC TTTTAGGTTAGTCGA TERM 5369 4406569 - 4406584 + r 86 -9 -4.30014 | opp_overlap 4406569 AGTAAAAACAAAAAA GAGGCT AATT AGCCTC TTTTAGGTTAGTCGA Shewana3_3669 4407852 - 4406608 - | malic enzyme, NAD-binding TERM 5370 4408140 - 4408127 - R 82 -4.5 -5.33921 | AAAGCAATGAAAAAA CGCCT AATA AAGCG AGAAATGTTGATTAA TERM 5371 4408322 - 4408340 + r 91 -10.2 -4.09739 | opp_overlap 4408324, overlap 4408324 AGACCAGAAAGCAAA AAGGCGCC ATA GGCGCCTC TTTTAGAAACATTGC TERM 5372 4408324 - 4408338 + r 100 -12.8 -3.64488 | opp_overlap 4408324, overlap 4408322 ACCAGAAAGCAAAAA GGCGCC ATA GGCGCC TCTTTTAGAAACATT TERM 5373 4408338 - 4408324 - R 100 -12.8 -5.05505 | opp_overlap 4408324 4408322 ACCAGAAAGCAAAAA GGCGCC ATA GGCGCC TCTTTTAGAAACATT rpmE 4408576 - 4408364 - | 50S ribosomal protein L31 TERM 5374 4408730 - 4408692 - R 71 -9.2 -2.91912 | gap 1, opp_overlap 4408728 4408729, overlap 4408695 TCACCCACGCAGACA CAAGTAGATTATC-TGA GCATTT TCACGATAATCTACTCG TCCACTGACGCTTAT Shewana3_3671 4409917 - 4408742 - | response regulator receiver protein TERM 5375 4409475 - 4409520 + g 70 -9.1 -3.51232 | gap 2, opp_overlap 4409480, overlap 4409471 4409480 GTTTTGTCACTTTTA GCAGAGCTTGCCGCCAGCTGA CTGGTC TCGGCTG-CGGCC-GCTTTGC TTGATTTCACAACCG TERM 5376 4410454 - 4410441 - g 71 -5.9 -4.39166 | overlap 4410421 CCTGAGACATTAAAA CGCGC TCCG GCGCA AAAACGCTTACTCGA TERM 5377 4411246 - 4411229 - g 74 -4.7 -4.81551 | TATCGATATCAAAAA CCTGCCC CTCA AGGCGGG AATGTCGGCGCCACT Shewana3_3672 4410021 - 4412231 + | primosomal protein N' argS 4412343 - 4414088 + | arginyl-tRNA synthetase TERM 5378 4414154 - 4414122 - g 79 -6.9 -4.67608 | gap 1, overlap 4414123 4414140 4414142 TACGCCAACAGAAAA CCGCAAGCGGGCGC GAAACA GCGCCC-CATGCGC GCAACACGAGCGAGG TERM 5379 4414153 - 4414123 - g 75 -10.4 -3.39842 | gap 1, overlap 4414122 4414140 4414142 ACGCCAACAGAAAAC CGCAAGCGGGCGC GAAACA GCGCCC-CATGCG CGCAACACGAGCGAG Shewana3_3674 4414092 - 4414787 + | sporulation domain-containing protein TERM 5380 4414852 - 4414805 - f 74 -9.8 -3.08032 | opp_overlap 4414814, overlap 4414802 4414814 CCGCTCGCAAAATCA GTCTGAACATCGCGGCGCGTGA CCCA TCACGCGCCGCGATTTTTTTAT CTTCTGGCCAACTGA TERM 5381 4414814 - 4414843 + F 100 -23.7 -5.84432 | opp_overlap 4414805 4414802 4414814 AAATCAGTCTGAACA TCGCGGCGCGTGA CCCA TCACGCGCCGCGA TTTTTTTATCTTCTG TERM 5382 4414843 - 4414814 - f 100 -23.7 -3.05536 | opp_overlap 4414814, overlap 4414805 4414802 AAATCAGTCTGAACA TCGCGGCGCGTGA CCCA TCACGCGCCGCGA TTTTTTTATCTTCTG Shewana3_3675 4415091 - 4415315 + | hypothetical protein TERM 5383 4415438 - 4415469 + T 73 -7.4 -4.20918 | opp_overlap 4415440, overlap 4415443 TGCTAAACCGCAAAA AATAAGGCCAAATA TCAC TATTTGGCCTTAGG TTTATTGGGCTTAAA TERM 5384 4415467 - 4415440 - T 100 -14.4 -5.12707 | opp_overlap 4415438 4415443 CTAAACCGCAAAAAA TAAGGCCAAATA TCAC TATTTGGCCTTA GGTTTATTGGGCTTA TERM 5385 4415443 - 4415464 + T 86 -11.7 -3.37761 | opp_overlap 4415440, overlap 4415438 AACCGCAAAAAATAA GGCCAAATA TCAC TATTTGGCC TTAGGTTTATTGGGC Shewana3_3676 4416454 - 4415522 - | SPFH domain-containing protein/band 7 family protein Shewana3_3677 4417389 - 4416454 - | SPFH domain-containing protein/band 7 family protein Shewana3_3678 4417871 - 4417401 - | hypothetical protein TERM 5386 4418380 - 4418367 - g 79 -5.3 -5.03201 | AATAACAATGAAAAA GACAT GCCT ATGTC TAGCATTAATGCTTT Shewana3_3679 4418359 - 4419111 + | hypothetical protein TERM 5387 4419183 - 4419144 - T 100 -20.4 -2.87132 | gap 1, opp_overlap 4419156, overlap 4419149 4419156 GCCTTGGCGGATACA GCG-AATAAAAAAGGTGCC TAG GGCACCTTTTTTATTACGC ACGCAACACTCGCTT TERM 5388 4419177 - 4419149 - T 100 -17.7 -3.15999 | opp_overlap 4419156, overlap 4419144 4419156 GGCGGATACAGCGAA TAAAAAAGGTGCC TAG GGCACCTTTTTTA TTACGCACGCAACAC TERM 5389 4419170 - 4419156 - T 100 -11.4 -5.49234 | opp_overlap 4419156, overlap 4419149 4419144 ACAGCGAATAAAAAA GGTGCC TAG GGCACC TTTTTTATTACGCAC TERM 5390 4419156 - 4419170 + T 100 -11.4 -5.4505 | opp_overlap 4419149 4419144 4419156 ACAGCGAATAAAAAA GGTGCC TAG GGCACC TTTTTTATTACGCAC Shewana3_3680 4419979 - 4419221 - | uridine phosphorylase Shewana3_3681 4420392 - 4420604 + | hypothetical protein TERM 5391 4420644 - 4420621 - T 79 -6.6 -4.62069 | opp_overlap 4420625, overlap 4420625 TGGTGACGCCAAAAA CGAAGGGCGC CTAA GCGCCCTTTT TGTTGCCTTGCGGTC TERM 5392 4420625 - 4420640 + T 100 -11.8 -5.13741 | opp_overlap 4420621 4420625 GACGCCAAAAACGAA GGGCGC CTAA GCGCCC TTTTTGTTGCCTTGC TERM 5393 4420640 - 4420625 - T 100 -11.8 -3.81926 | opp_overlap 4420625, overlap 4420621 GACGCCAAAAACGAA GGGCGC CTAA GCGCCC TTTTTGTTGCCTTGC Shewana3_3682 4421839 - 4420664 - | ornithine decarboxylase Shewana3_3683 4422748 - 4422269 - | hypothetical protein Shewana3_3684 4422917 - 4423753 + | MscS mechanosensitive ion channel TERM 5394 4423767 - 4423790 + F 74 -10.4 -2.62515 | gap 1, opp_overlap 4423757 4423755 4423754 AAGCACCTCCATCGA GGCGAATGGCT TCA AGC-ATTCGCC TCATCTGGCACAGTT TERM 5395 4424546 - 4424524 - g 71 -7.7 -3.98224 | ACACGCAAAAGATAA CTTAGGCCA TATGC TGGCCTCAG GCCAAGGCGGCCCTA Shewana3_3685 4423871 - 4425409 + | Sel1 domain-containing protein TERM 5396 4425479 - 4425462 - T 100 -12.7 -4.2349 | opp_overlap 4425462 CCCCTACACTTAAAA CCACGGC TTAA GCCGTGG TTTTGCTCAAATGCC TERM 5397 4425462 - 4425479 + T 100 -12.7 -4.26903 | opp_overlap 4425462 CCCCTACACTTAAAA CCACGGC TTAA GCCGTGG TTTTGCTCAAATGCC Shewana3_3686 4426308 - 4425469 - | LysR family transcriptional regulator Shewana3_3687 4426470 - 4427201 + | short-chain dehydrogenase/reductase SDR TERM 5398 4427253 - 4427243 - f 79 -6.8 -4.64598 | overlap 4427244 GAATCATGGGAAAAA CGCA GTG TGCG AGTGCCGCTGCGTTA Shewana3_3688 4427687 - 4428016 + | cytochrome c family protein TERM 5399 4428768 - 4428752 - g 72 -3.6 -4.88736 | GAGCATGTATAAAAA CTGGGG CGACT CCACAG GTGTACAAGTGTTCG Shewana3_3689 4428195 - 4429925 + | hypothetical protein Shewana3_3690 4429973 - 4431361 + | cytochrome c, putative TERM 5400 4431429 - 4431458 + F 100 -12.3 -5.32882 | CCCCTGCAAACCTTT GAGAGCTTAGC ACCCGCTG GCTAAGCTCTC TTTTTTATCGTGCTA Shewana3_3691 4431640 - 4432800 + | sulphate transporter TERM 5401 4432823 - 4432856 + T 86 -12.6 -2.55 | opp_overlap 4432828, overlap 4432828 TATCTCCAAGAAAGT AAAAACCACAGCAC ATCTCA GTGCTGTGGTTTTA TCCCTTAAAATGTTC TERM 5402 4432828 - 4432851 + T 100 -12.5 -4.4715 | opp_overlap 4432828, overlap 4432823 CCAAGAAAGTAAAAA CCACAGCAC ATCTCA GTGCTGTGG TTTTATCCCTTAAAA TERM 5403 4432851 - 4432828 - T 100 -12.5 -5.09521 | opp_overlap 4432828 4432823 CCAAGAAAGTAAAAA CCACAGCAC ATCTCA GTGCTGTGG TTTTATCCCTTAAAA Shewana3_3692 4433865 - 4432861 - | polysaccharide deacetylase Shewana3_3693 4434506 - 4433862 - | hypothetical protein TERM 5404 4435338 - 4435318 - H 76 -6.7 -4.56597 | CCCCCTGCTGAAAAA TGGGATGGG ACA CCCGGCCCA CATGCCAGATTTGAT TERM 5405 4436246 - 4436223 - g 74 -6.6 -4.2803 | overlap 4436224 GATTCCAATCTAAAA CGGCGCCAAC TGTC GATGACGCCA AGAGTGCTCGTCGCC TERM 5406 4436315 - 4436331 + G 74 -7.3 -4.21194 | ACTGAACGAACTGAG TCAGCAC CAA GTGTTGA TTTTAAATCGTGGCG Shewana3_3695 4435761 - 4436672 + | LysR family transcriptional regulator Shewana3_3696 4438536 - 4436758 - | histidine kinase TERM 5407 4437992 - 4437959 - G 100 -9.5 -4.91712 | opp_overlap 4437959 4437959, overlap 4437960 TCTAAGGTACAAAAA GGCGCAATGGCAGCG TCGG CATTGCCATCGCGCA CTTGGTAGATTAACG TERM 5408 4437991 - 4437960 - G 83 -13 -3.54304 | opp_overlap 4437959 4437959, overlap 4437959 CTAAGGTACAAAAAG GCGCAATGGCAGCG TCGG CATTGCCATCGCGC ACTTGGTAGATTAAC TERM 5409 4438059 - 4438048 - G 76 -5.8 -4.66609 | CACGTCACCGAAAAA CTGC TCCG GCAG ATAACCCATTTTATG TERM 5410 4438524 - 4438505 - G 74 -8.6 -4.0162 | TCGGCATAGGACAAA TTGAGCCC CATT AGGCTCAA GATGCAACTCACTAC TERM 5411 4439054 - 4439073 + G 73 -2.8 -5.00616 | gap 1, opp_overlap 4439048, overlap 4439055 TGGCATTAAGCGCCT TTCGCAAGG GCG CCT-GCGAC TTTTTTCAAAAACCC Shewana3_3697 4438771 - 4439376 + | two component LuxR family transcriptional regulator TERM 5412 4439464 - 4439482 + F 100 -13.2 -4.02534 | opp_overlap 4439460 4439452, overlap 4439466 ACACAAAACAGCCCC CTGCGACA AGC TGTCGCAG TTTGTCACTTTGGCT TERM 5413 4439466 - 4439490 + F 81 -9.3 -3.89617 | opp_overlap 4439460 4439452, overlap 4439464 4439486 ACAAAACAGCCCCCT GCGACAAGCTG TCG CAGTTTGTCAC TTTGGCTTTGTCGCT TERM 5414 4439587 - 4439615 + F 100 -11 -5.63517 | overlap 4439588 CTGCTTTAGAACCTT CCCCCGAGAACG GCCAG TGTTCTCGGGGC TTTTTTATTTCCCCA TERM 5415 4439588 - 4439614 + F 100 -14.5 -3.97026 | overlap 4439587 TGCTTTAGAACCTTC CCCCGAGAACG GCCAG TGTTCTCGGGG CTTTTTTATTTCCCC Shewana3_3698 4439799 - 4440377 + | methylation site containing protein TERM 5416 4440390 - 4440423 + F 100 -9.6 -4.70879 | TAATATCCGTTATCA GCCACAGGGCAT AAAATCCCCA ACGCCCTGTGGC TTTTTACGCTTTCAC Shewana3_3699 4440522 - 4441046 + | ATP-dependent protease peptidase subunit hslU 4441065 - 4442393 + | ATP-dependent protease ATP-binding subunit TERM 5417 4442461 - 4442500 + F 89 -10.2 -3.9644 | gap 1, overlap 4442462 TCGTGCAAAATTGTG ACTGTGGCTAAGGCTTACA CTT TGTAA-CCTTAGCCACAAA TTGTTATGTTACAGC TERM 5418 4442462 - 4442499 + F 100 -13.7 -2.97382 | gap 1, overlap 4442461 CGTGCAAAATTGTGA CTGTGGCTAAGGCTTACA CTT TGTAA-CCTTAGCCACAA ATTGTTATGTTACAG TERM 5419 4442787 - 4442775 - g 74 -7.7 -4.20084 | ACTACGCAGTTAAAA TCGTC TTC GACGA TGGCCACGATACCGG Shewana3_3701 4442549 - 4442935 + | hypothetical protein TERM 5420 4442968 - 4442946 - f 74 -7.6 -3.96387 | ACTAATCGAATTAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAGGAGGACT TERM 5421 4443044 - 4443034 - f 73 -8.2 -3.6215 | opp_overlap 4443034 4443039 CCAACGGAGTTGAAA GCCC CTT GGGC TCATTGCCAAATTTG Shewana3_3702 4443313 - 4443900 + | hypothetical protein Shewana3_3703 4444328 - 4445383 + | hypothetical protein TERM 5422 4445571 - 4445597 + F 73 -8.7 -3.53012 | overlap 4445575 GTTGAAGAAAATCGT GTGACGCAGAC AGGAC GTCTGCGTAGC TTTCGGGGGAAGGGA TERM 5423 4445575 - 4445593 + F 74 -10.3 -2.64155 | overlap 4445571 AAGAAAATCGTGTGA CGCAGAC AGGAC GTCTGCG TAGCTTTCGGGGGAA TERM 5424 4445735 - 4445757 + F 74 -7.6 -3.91846 | overlap 4445731 AGTCCTCCTTGGTCG GGTGTGGGGT GAA GCCCCACGAC TTTGACTTTGCTTTT TERM 5425 4446092 - 4446110 + G 76 -6 -4.66609 | overlap 4446093 CTATGTGACACACCA TGTGCAAA AGA TTTGCGCG TTTTTCAGTGCCATG Shewana3_3704 4445925 - 4447502 + | deoxyribodipyrimidine photolyase-related protein Shewana3_3705 4447529 - 4448239 + | C factor cell-cell signaling protein Shewana3_3706 4448756 - 4448280 - | hypothetical protein Shewana3_3707 4449339 - 4448788 - | response regulator receiver protein Shewana3_3708 4450625 - 4449336 - | ATPase domain-containing protein Shewana3_3709 4451547 - 4450618 - | dTDP-4-dehydrorhamnose reductase Shewana3_3710 4451674 - 4453575 + | hypothetical protein Shewana3_3711 4453942 - 4453577 - | hypothetical protein Shewana3_3712 4455007 - 4454090 - | pseudouridine synthase TERM 5426 4454397 - 4454414 + g 76 -6.3 -4.59773 | gap 1 ATGGTGAAACTCGGC TCGC-TGC GTT GCATGCGA TTTTTCACCGTCCAA TERM 5427 4454954 - 4454933 - G 83 -3 -5.45813 | overlap 4454935 4454936 GATCAAAAAAGAAAA TACGGTTG GTTTAT CAACCACA TCTAAGGGAAGAACC TERM 5428 4455017 - 4455038 + r 73 -7.3 -4.18802 | opp_overlap 4455017 4455016 4455013 AGTCATAAAAACAAC TAGCGGC GATAATGA GCCGCTA TTTTAGCCTCTGTGT Shewana3_3713 4455635 - 4455060 - | ATP-dependent protease La Shewana3_3714 4456834 - 4455779 - | hypothetical protein Shewana3_3715 4457096 - 4459534 + | TonB-dependent receptor TERM 5429 4459574 - 4459547 - f 83 -11.4 -2.95918 | opp_overlap 4459552, overlap 4459552 TAAGCCGCAAACAAT GAAAACAGGCCA TTTA TGGCCTGTTTTT TTATGTCTATCGCTT TERM 5430 4459569 - 4459552 - f 100 -11.3 -4.62203 | opp_overlap 4459552, overlap 4459547 CGCAAACAATGAAAA CAGGCCA TTTA TGGCCTG TTTTTTTATGTCTAT TERM 5431 4459552 - 4459569 + F 100 -11.3 -5.77988 | opp_overlap 4459552 4459547 CGCAAACAATGAAAA CAGGCCA TTTA TGGCCTG TTTTTTTATGTCTAT Shewana3_3716 4459662 - 4460123 + | hypothetical protein TERM 5432 4460460 - 4460448 - g 90 -9.1 -4.73682 | CGCCAGAATACAAAA CCAGC TAT GCTGG TGAGCAGGTCTATAT Shewana3_3717 4460267 - 4461187 + | putative manganese-dependent inorganic pyrophosphatase TERM 5433 4461239 - 4461208 - f 100 -14 -3.04461 | gap 1, opp_overlap 4461208 4461216, overlap 4461210 4461216 CATTTAGTTGTAATA CATAAAAAGCCGAAC TCA GTTCGGCTTTTT-TG TGCTTTCGATTTAGT TERM 5434 4461208 - 4461239 + F 100 -14 -3.00419 | gap 1, opp_overlap 4461208 4461210 4461216, overlap 4461216 CATTTAGTTGTAATA CATAAAAAGCCGAAC TCA GTTCGGCTTTTT-TG TGCTTTCGATTTAGT TERM 5435 4461238 - 4461210 - f 100 -13.3 -3.07895 | opp_overlap 4461208 4461216, overlap 4461208 4461216 TTTAGTTGTAATACA TAAAAAGCCGAAC TCA GTTCGGCTTTTTT GTGCTTTCGATTTAG TERM 5436 4461232 - 4461216 - f 100 -12.3 -5.10064 | opp_overlap 4461208 4461216, overlap 4461210 4461208 TGTAATACATAAAAA GCCGAAC TCA GTTCGGC TTTTTTGTGCTTTCG TERM 5437 4461216 - 4461232 + F 100 -12.3 -5.42265 | opp_overlap 4461216 4461210 4461208, overlap 4461208 TGTAATACATAAAAA GCCGAAC TCA GTTCGGC TTTTTTGTGCTTTCG Shewana3_3718 4461356 - 4461967 + | DedA family protein TERM 5438 4461986 - 4462014 + T 100 -13.9 -3.45366 | GAGTACGATCCTTTA CTCAGTCTCTACC TTA GGTTGAGGCTGAG TTGGTTCATTCGACG Shewana3_3719 4463518 - 4461983 - | hypothetical protein TERM 5439 4463497 - 4463483 - G 76 -4.3 -4.93316 | CAACAACATTAAAAA CAGTA ACTTG TACTG CGTAAACTTCTTAAG Shewana3_3720 4464698 - 4463658 - | hypothetical protein TERM 5440 4464126 - 4464114 - G 76 -4.8 -5.03747 | opp_overlap 4464117 AAATGGCTTAAAAAA TGCG GCGAT CGCA TCCGCCTCTTCGAAG TERM 5441 4464242 - 4464226 - G 70 -4.3 -4.67641 | overlap 4464227 ATCGGAAAACCAAAA TGATGCC AAT GGCACCC CAGTGCCACATCTAC Shewana3_3721 4465284 - 4464772 - | phosphoesterase, PA-phosphatase related TERM 5442 4465296 - 4465315 + r 72 -10 -2.79679 | opp_overlap 4465292 4465289 ACATAAAACAGGCTC CTTGCTGG CATG CCAGCGAG TATCATGGCGATGTT TERM 5443 4465629 - 4465595 - R 89 -12.3 -2.87132 | gap 2, overlap 4465597 CGTGCGGGGGAGATA CAGTGCTGCCCTGATGC TAA GC-TC-GGGCAACACTG TCAGAAAACCTTCAA Shewana3_3722 4465895 - 4465641 - | uroporphyrinogen decarboxylase Shewana3_3723 4466213 - 4466698 + | ribonuclease activity regulator protein RraA TERM 5444 4466709 - 4466746 + F 83 -11.5 -2.96405 | gap 1, opp_overlap 4466721, overlap 4466721 AGTAATGACAAATTA CCTATCAAGAAAGCCAGC TAA GCTGGCTTTTTT-ATTGG CTGTTTTTCGCTAAG TERM 5445 4466735 - 4466721 - f 100 -11.4 -4.258 | opp_overlap 4466721 4466709 TTACCTATCAAGAAA GCCAGC TAA GCTGGC TTTTTTATTGGCTGT TERM 5446 4466721 - 4466735 + F 100 -11.4 -5.49234 | opp_overlap 4466721, overlap 4466709 TTACCTATCAAGAAA GCCAGC TAA GCTGGC TTTTTTATTGGCTGT TERM 5447 4467201 - 4467161 - g 78 -12.6 -2.90723 | gap 1 GGATCTGCAATTACA GGCGCAGGATGGCGAAGGC GCAA GCCTACCCCAT-CTACGCC AGGCGGTTGAGCAAC Shewana3_3724 4466829 - 4467881 + | arginase/agmatinase/formiminoglutamase TERM 5448 4467890 - 4467914 + F 86 -12.2 -3.0263 | gap 1, opp_overlap 4467884 CCAATAGCATGTTAA GCTT-GCGCCC TTGT GGGCGCTAAGC TATTCACCAAATCCT TERM 5449 4468019 - 4467995 - f 73 -8.5 -3.66178 | opp_overlap 4467994 TTGGCCAATGCCAAA CGCCTCAAGCC AAC GCCTTGAGGAG AGTTTACTAACTCGA TERM 5450 4468257 - 4468268 + G 73 -5.8 -4.58283 | TGACGTTATGTCCTT CGGT ATTC ACCG TTTTTGGAAGCGTTA Shewana3_3725 4468123 - 4468878 + | demethylmenaquinone methyltransferase Shewana3_3726 4468878 - 4469498 + | hypothetical protein TERM 5451 4470940 - 4470923 - g 70 -8.5 -3.78312 | opp_overlap 4470915 AAATTAGGCAGGAAA TTGCTGA GTTC TCAGCAA CAAATGCTAGATAAG Shewana3_3727 4469495 - 4471144 + | 2-octaprenylphenol hydroxylase Shewana3_3728 4471204 - 4471461 + | twin arginine-targeting protein translocase Shewana3_3729 4471468 - 4471911 + | twin-arginine translocation protein, TatB subunit TERM 5452 4472247 - 4472259 + G 72 -4.1 -4.87803 | GCCGCTACTCTTCAG TAGCA CAG TGCTG TTTTATTTAGGGATC Shewana3_3730 4471915 - 4472664 + | Sec-independent protein translocase TatC Shewana3_3731 4472709 - 4473239 + | hypothetical protein Shewana3_3732 4473239 - 4474042 + | Sec-independent protein translocase TatD Shewana3_3733 4474035 - 4475912 + | diguanylate cyclase Shewana3_3734 4475922 - 4476932 + | delta-aminolevulinic acid dehydratase TERM 5453 4476961 - 4476979 + T 100 -11.7 -5.06414 | opp_overlap 4476961 ACAATTCTAAGCATA GGGCAGC CATAC GCTGCCC TTTTTATTGGCCCGA TERM 5454 4476979 - 4476961 - T 83 -11.7 -2.92513 | opp_overlap 4476961 ACAATTCTAAGCATA GGGCAGC CATAC GCTGCCC TTTTTATTGGCCCGA TERM 5455 4477118 - 4477136 + T 89 -10.3 -4.06505 | opp_overlap 4477118 AACAAAAACAAAAAA GCCAGCT TATTC AGCTGGC TTTCTGCTCTCTTCA TERM 5456 4477136 - 4477118 - T 100 -10.3 -6.01725 | opp_overlap 4477118 AACAAAAACAAAAAA GCCAGCT TATTC AGCTGGC TTTCTGCTCTCTTCA TERM 5457 4477354 - 4477366 + T 72 -6.3 -4.3277 | AGCTGCTTTGAGTTA CACTT CTT AAGTG TTTGTATTCTATCTA TERM 5458 4478565 - 4478537 - T 72 -8.1 -3.85698 | TGTGTTTTTGATAAA CAGTTGCAGCCAC CTG GTATCTGCGACTG CCGTCAGCTTAGGGA TERM 5459 4479019 - 4479035 + T 85 -9.4 -4.08546 | overlap 4479001 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 5460 4479817 - 4479829 + T 83 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 5461 4480397 - 4480437 + T 84 -2.7 -5.63374 | opp_overlap 4480404 4480409 4480411 4480413, overlap 4480411 GGACTCGCCTTAGAC TTGAATATTCAAGACACTT AAA AAGTGTTTTAAGAACTCAA TTTTTTTCGTATTAA TERM 5462 4482264 - 4482286 + T 70 -7.1 -3.76952 | gap 1 TGATGTAAATTTTGA TTACTC-GCC AAAC GGCAGAGTAA TTTCGATTAACTCAA TERM 5463 4482392 - 4482406 + T 73 -8.6 -3.5774 | TCAGCGGGTCAGGGC TGCGTA TTC TACGCA TTTCCCGAGTTGCGT TERM 5464 4482418 - 4482449 + T 70 -8 -3.60627 | overlap 4482428 CGCATTTCCCGAGTT GCGTCAAGGCGTTT TTGC AAACTTCTTGCCGC TTTCGAATCAAGTGC TERM 5465 4483123 - 4483150 + T 71 -8.4 -3.5556 | opp_overlap 4483127, overlap 4483125 4483127 AACTCTCGGAAAGCA AAAAGGCCACCT TATT AGGTGGCCTCTC TTAATTTAGCGTTTG TERM 5466 4483125 - 4483148 + T 81 -11 -3.34267 | opp_overlap 4483127, overlap 4483123 4483127 CTCTCGGAAAGCAAA AAGGCCACCT TATT AGGTGGCCTC TCTTAATTTAGCGTT TERM 5467 4483127 - 4483146 + T 100 -13.6 -3.2313 | opp_overlap 4483127, overlap 4483125 4483123 CTCGGAAAGCAAAAA GGCCACCT TATT AGGTGGCC TCTCTTAATTTAGCG TERM 5468 4483146 - 4483127 - T 100 -13.6 -4.98531 | opp_overlap 4483127 4483125 4483123 CTCGGAAAGCAAAAA GGCCACCT TATT AGGTGGCC TCTCTTAATTTAGCG TERM 5469 4483608 - 4483620 + T 72 -6.3 -4.3277 | AGCTGCTTTGAGTTA CACTT CTT AAGTG TTTGTATTCTATCTA TERM 5470 4484819 - 4484791 - T 72 -8.1 -3.85698 | TGTGTTTTTGATAAA CAGTTGCAGCCAC CTG GTATCTGCGACTG CCGTCAGCTTAGGGA TERM 5471 4485273 - 4485289 + T 85 -9.4 -4.08546 | overlap 4485255 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 5472 4486071 - 4486083 + T 83 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 5473 4486651 - 4486691 + T 84 -2.7 -5.63374 | opp_overlap 4486658 4486663 4486665 4486667, overlap 4486665 GGACTCGCCTTAGAC TTGAATATTCAAGACACTT AAA AAGTGTTTTAAGAACTCAA TTTTTTTCGTATTAA TERM 5474 4486806 - 4486776 - T 100 -8.5 -5.00884 | opp_overlap 4486775 AGCGGGCTTAAAAAA GCCAAAGATAA TTTTTCAGT TTATCTTTGGC ATCTCTAACCAGATT TERM 5475 4488758 - 4488780 + T 70 -7.1 -3.76952 | gap 1 TGATGTAAATTTTGA TTACTC-GCC ATAC GGCAGAGTAA TTTCGATTAACTCAA TERM 5476 4488880 - 4488906 + T 81 -7.2 -4.66609 | overlap 4488882 GTGATTTCAGCGGGT CAGGGCTGCGTA TTC TACGCATTCCCG TTTTTGCGTCAAGTA TERM 5477 4489263 - 4489245 - T 100 -11 -4.75372 | opp_overlap 4489245 AGCAGGCATGAAAAA GGCGACTA TTT CAGTCGCC TTTTAAATTGAGCTT TERM 5478 4489245 - 4489263 + T 100 -10.3 -4.28432 | opp_overlap 4489245 AGCAGGCATGAAAAA GGCGACT ATTTC AGTCGCC TTTTAAATTGAGCTT Shewana3_3735 4492014 - 4489288 - | preprotein translocase subunit SecA TERM 5479 4489971 - 4489981 + g 70 -3.2 -4.79826 | CCGCACTGATCACAT CGTC TTG GATG TTTTTGATGGTGTCT Shewana3_3736 4492974 - 4492075 - | peptidase M23B TERM 5480 4493438 - 4493416 - g 100 -19.2 -4.77757 | GGCGAAAAACTAAAA CGGCTGGCCA CAT TGGCCAGCCG TAATAAGTAAACATC Shewana3_3737 4493002 - 4493448 + | hypothetical protein lpxC 4494382 - 4493462 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Shewana3_3739 4495750 - 4494563 - | cell division protein FtsZ Shewana3_3740 4497013 - 4495778 - | cell division protein FtsA Shewana3_3741 4497743 - 4496994 - | polypeptide-transport-associated domain-containing protein Shewana3_3742 4499361 - 4497895 - | UDP-N-acetylmuramate--L-alanine ligase Shewana3_3743 4500452 - 4499364 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Shewana3_3744 4501663 - 4500452 - | cell division protein FtsW Shewana3_3745 4502972 - 4501653 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase Shewana3_3746 4504061 - 4502979 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 5481 4503553 - 4503537 - G 74 -8 -4.06384 | opp_overlap 4503550, overlap 4503542 CGCCAATACGATAAA CACAGC GCCAA GCTGTG GCATCACGTCCTTAA Shewana3_3747 4505444 - 4504062 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Shewana3_3748 4506922 - 4505441 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 5482 4505942 - 4505928 - G 71 -7.8 -4.0031 | ACGGGCACTAAATAA GGCACC TTG GATGCC AGTGCACGCATATCC TERM 5483 4506645 - 4506631 - G 70 -11.4 -2.60555 | overlap 4506628 4506627 CAACGGGATAACGCA CTGCGG CGA CCGCAG ACACTTGCCTAGCTA TERM 5484 4506834 - 4506818 - G 73 -5.1 -4.59773 | opp_overlap 4506820 4506824, overlap 4506820 4506822 TGGCAGCGCTAAAAA CACATCG CCG CGACGTA TTGCGCGGCTATCTA Shewana3_3749 4508670 - 4506919 - | peptidoglycan synthetase FtsI Shewana3_3750 4508998 - 4508684 - | cell division protein FtsL mraW 4509952 - 4509011 - | S-adenosyl-methyltransferase MraW TERM 5485 4509351 - 4509367 + g 70 -2.2 -4.92756 | opp_overlap 4509338, overlap 4509331 4509338 AACACCCGAGTTGCA GGGTGT TTATT ACGCTC TTTATTTTTGGTGAT Shewana3_3752 4510441 - 4509983 - | cell division protein MraZ Shewana3_3753 4510959 - 4511663 + | hypothetical protein TERM 5486 4511882 - 4511856 - g 73 -6.4 -4.43844 | overlap 4511857 GCACTACTCATAAAA CGGCGAGTCCCG CTA CTGCACTCGCCC CCACGGAAAACCTAC TERM 5487 4511881 - 4511857 - g 70 -9.9 -3.25824 | overlap 4511856 CACTACTCATAAAAC GGCGAGTCCCG CTA CTGCACTCGCC CCCACGGAAAACCTA Shewana3_3754 4511660 - 4512739 + | PepSY-associated TM helix domain-containing protein Shewana3_3755 4512835 - 4513155 + | hypothetical protein TERM 5488 4513173 - 4513203 + T 95 -12.6 -3.35597 | opp_overlap 4513175 4513178, overlap 4513175 4513178 TACTGCGATTAAATG AATAAGGCGCAACC TAA GGGTGCGCCTTATG TGTTTCAAACCTAAA TERM 5489 4513201 - 4513175 - T 100 -15.2 -3.56704 | opp_overlap 4513173 4513175 4513178, overlap 4513178 CTGCGATTAAATGAA TAAGGCGCAACC TAA GGGTGCGCCTTA TGTGTTTCAAACCTA TERM 5490 4513175 - 4513201 + T 100 -15.2 -3.24708 | opp_overlap 4513175 4513178, overlap 4513173 4513178 CTGCGATTAAATGAA TAAGGCGCAACC TAA GGGTGCGCCTTA TGTGTTTCAAACCTA TERM 5491 4513198 - 4513178 - T 100 -12.5 -3.91541 | opp_overlap 4513175 4513173 4513178, overlap 4513175 CGATTAAATGAATAA GGCGCAACC TAA GGGTGCGCC TTATGTGTTTCAAAC TERM 5492 4513178 - 4513198 + T 100 -12.5 -3.76232 | opp_overlap 4513178 4513175, overlap 4513175 4513173 CGATTAAATGAATAA GGCGCAACC TAA GGGTGCGCC TTATGTGTTTCAAAC Shewana3_3756 4514708 - 4513224 - | glycerol kinase TERM 5493 4514859 - 4514876 + r 100 -11.3 -4.7373 | opp_overlap 4514859 TTTAGGCACAAAAAA GCCCTGA AGAT TCAGGGC TTTTTCATCAGCTAG TERM 5494 4514876 - 4514859 - R 100 -11.3 -5.28176 | opp_overlap 4514859 TTTAGGCACAAAAAA GCCCTGA AGAT TCAGGGC TTTTTCATCAGCTAG Shewana3_3757 4516245 - 4514896 - | membrane protein involved in aromatic hydrocarbon degradation TERM 5495 4516730 - 4516709 - R 100 -13.1 -5.24796 | opp_overlap 4516709 TGTAGATAATAAAAA CGCCTAGTT TTCG AACTAGGCG TTTAAGATTAACATC TERM 5496 4516709 - 4516730 + r 100 -13.1 -3.66654 | opp_overlap 4516709 TGTAGATAATAAAAA CGCCTAGTT TTCG AACTAGGCG TTTAAGATTAACATC Shewana3_3758 4517379 - 4516774 - | isopropylmalate isomerase small subunit Shewana3_3759 4518828 - 4517404 - | isopropylmalate isomerase large subunit TERM 5497 4517469 - 4517432 - G 79 -7.5 -4.45083 | overlap 4517433 CGGATATCGACAAAA TGCCCCGCGATCGCCGC CGCT GCCGCCATCGCTGGACT CACCAAATGGGTACG TERM 5498 4517468 - 4517433 - G 76 -11 -3.26568 | overlap 4517432 GGATATCGACAAAAT GCCCCGCGATCGCCGC CGCT GCCGCCATCGCTGGAC TCACCAAATGGGTAC Shewana3_3760 4519922 - 4518828 - | 3-isopropylmalate dehydrogenase Shewana3_3761 4521542 - 4519974 - | 2-isopropylmalate synthase TERM 5499 4520477 - 4520466 - G 74 -4.4 -4.81249 | GGCCAAATGTAAAAA CTGT TCGT ACAG GGCATCCAGATTGAA TERM 5500 4521606 - 4521626 + H 100 -12.5 -4.01564 | opp_overlap 4521606, overlap 4521597 TTCAGATACAAAAAA CCCCGCAAC ATT GGTGCGGGG TTTATGAGTGTTTTG TERM 5501 4521626 - 4521606 - H 100 -12.5 -5.4251 | opp_overlap 4521606 4521597 TTCAGATACAAAAAA CCCCGCAAC ATT GGTGCGGGG TTTATGAGTGTTTTG Shewana3_3762 4522039 - 4523817 + | response regulator receiver protein Shewana3_3763 4525622 - 4523799 - | ATP-dependent DNA helicase RecQ Shewana3_3764 4525896 - 4526360 + | hypothetical protein TERM 5502 4526363 - 4526377 + F 74 -4.2 -5.06103 | TATGGTTGGCTAGTC CGTTGT CAC ACATCG TTTTTTAGAAATTGT TERM 5503 4526416 - 4526456 + F 75 -5.6 -4.7254 | gap 1, opp_overlap 4526416 4526421 4526427, overlap 4526417 4526421 TTCAACATCGATAAC CTAAAGGGAAACACCTTGA TTAC TCA-GGTGTTTCTCTCTAA TTTTTGCTGAGCACT TERM 5504 4526417 - 4526455 + F 73 -9.1 -3.43042 | gap 1, opp_overlap 4526416 4526421 4526427, overlap 4526416 4526421 TCAACATCGATAACC TAAAGGGAAACACCTTGA TTAC TCA-GGTGTTTCTCTCTA ATTTTTGCTGAGCAC TERM 5505 4526451 - 4526421 - f 72 -7.7 -3.81339 | gap 1, opp_overlap 4526417 4526416 4526421, overlap 4526416 4526427 CATCGATAACCTAAA GGGAAACACCTTGA TTAC TCA-GGTGTTTCTC TCTAATTTTTGCTGA TERM 5506 4526421 - 4526451 + F 74 -9.9 -3.20218 | gap 1, opp_overlap 4526421 4526416 4526427, overlap 4526417 4526416 CATCGATAACCTAAA GGGAAACACCTTGA TTAC TCA-GGTGTTTCTC TCTAATTTTTGCTGA TERM 5507 4526673 - 4526687 + G 79 -8.6 -4.2828 | AACTACTCCACCATG TTTCGG CGA CCGAAA TTTTACTGCATCGGG Shewana3_3765 4526576 - 4527463 + | transporter DMT superfamily protein TERM 5508 4527473 - 4527453 - T 100 -13.3 -4.39571 | overlap 4527469 CCTATAAACGCAAAA CGGCGCGAT AAC ATCACGCCG CAGCCGACAGTTGCA Shewana3_3766 4528041 - 4527523 - | hypothetical protein TERM 5509 4528106 - 4528124 + r 77 -10.3 -3.22102 | opp_overlap 4528106, overlap 4528104 TTATGTCAACAAAAA TGCCAGC GCTAG GCTGGCA TCTTATCAAGCGTGT TERM 5510 4528124 - 4528106 - R 100 -10.3 -5.08601 | opp_overlap 4528106 4528104 TTATGTCAACAAAAA TGCCAGC GCTAG GCTGGCA TCTTATCAAGCGTGT Shewana3_3767 4529482 - 4528145 - | N-acetylglutamate synthase TERM 5511 4528577 - 4528593 + g 71 -7.9 -4.05322 | opp_overlap 4528571 4528560 GCTAATCGACGCGCG GCGCAGA CGC TCAGCGC TTTCTGTCACGATTT TERM 5512 4529763 - 4529746 - R 100 -11.3 -5.9663 | opp_overlap 4529746 AAAGACCAAAAAAAA GCCCCTT AGAT AAGGGGC TTTTCTCGAAACACT TERM 5513 4529746 - 4529763 + r 100 -11.3 -4.37092 | opp_overlap 4529746 AAAGACCAAAAAAAA GCCCCTT AGAT AAGGGGC TTTTCTCGAAACACT rpmG 4529961 - 4529788 - | 50S ribosomal protein L33 Shewana3_3769 4530204 - 4529968 - | 50S ribosomal protein L28P TERM 5514 4530134 - 4530122 - G 80 -4.8 -5.09225 | opp_overlap 4530122 4530125, overlap 4530125 AGGTTAGGTAAAAAA CGAC GACGG GTCG CGTTTTTTGCGTGCG TERM 5515 4530125 - 4530136 + g 74 -2.2 -5.08824 | gap 1, opp_overlap 4530122 4530125, overlap 4530122 TTAGGTAAAAAACGA CGACG GGT CG-CG TTTTTTGCGTGCGAA Shewana3_3770 4531004 - 4530327 - | DNA repair protein RadC TERM 5516 4531898 - 4531879 - g 70 -11.4 -2.67803 | overlap 4531875 GGTCCAGTAAATTTA GCCACCCC AGAG GGGGTGAC GCGAATCGATGTCGA Shewana3_3771 4531126 - 4532355 + | phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase dut 4532356 - 4532814 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 5517 4533279 - 4533266 - g 74 -3.8 -5.00616 | TTCTGCGGGAAAAAA CCCT ACGTGA AGGG AAAGGCTTTAATTTA slmA 4532845 - 4533438 + | nucleoid occlusion protein TERM 5518 4533473 - 4533456 - f 100 -11.3 -4.19177 | opp_overlap 4533456 ATTTTTCAATACAAA GGACGGT AATC ACCGTCC TTTCTTTTATCCCCC TERM 5519 4533456 - 4533473 + F 100 -11.3 -4.77173 | opp_overlap 4533456 ATTTTTCAATACAAA GGACGGT AATC ACCGTCC TTTCTTTTATCCCCC Shewana3_3774 4533574 - 4535559 + | peptidase S9 prolyl oligopeptidase TERM 5520 4535618 - 4535643 + F 91 -7.6 -4.87626 | opp_overlap 4535627 TTAGCGCCCCGAGGA GCCGATAATC GATAAG GACTATCGGC TTTTTCATCTTCAGC TERM 5521 4536235 - 4536245 + G 74 -6.8 -4.30719 | opp_overlap 4536216 4536213 4536234 4536235, overlap 4536212 TTATCAAAGATTAAC CGCA TAG TGCG TTTCTTCTCCCAGCG folE 4535827 - 4536477 + | GTP cyclohydrolase I TERM 5522 4536533 - 4536507 - T 100 -10.9 -5.626 | opp_overlap 4536507 CAGGGCATAAAAAAA CGCTGCCATTC TTGAT GAATCGCAGCG TTTTTGTTTTAGCGG TERM 5523 4536507 - 4536533 + T 100 -10.9 -5.45802 | opp_overlap 4536507 CAGGGCATAAAAAAA CGCTGCCATTC TTGAT GAATCGCAGCG TTTTTGTTTTAGCGG pyrE 4537218 - 4536571 - | orotate phosphoribosyltransferase TERM 5524 4537314 - 4537269 - R 84 -11.5 -3.19602 | gap 1, opp_overlap 4537284, overlap 4537278 4537284 TGGGTTATAGCAATA TTGAT-TTAATAAAAAGCCCCA TAA TGGGGCTTCTTATCAACAACAA TTAATTTAATGCGGC TERM 5525 4537304 - 4537278 - R 100 -14.6 -3.09987 | opp_overlap 4537284, overlap 4537269 4537284 GCAATATTGATTTAA TAAAAAGCCCCA TAA TGGGGCTTCTTA TCAACAACAATTAAT TERM 5526 4537298 - 4537284 - R 100 -11.4 -5.10461 | opp_overlap 4537284, overlap 4537278 4537269 TTGATTTAATAAAAA GCCCCA TAA TGGGGC TTCTTATCAACAACA TERM 5527 4537284 - 4537298 + r 95 -11.4 -3.78934 | opp_overlap 4537284 4537278 4537269 TTGATTTAATAAAAA GCCCCA TAA TGGGGC TTCTTATCAACAACA Shewana3_3777 4538028 - 4537315 - | RNAse PH TERM 5528 4538966 - 4538945 - g 74 -3.5 -5.03314 | opp_overlap 4538946, overlap 4538924 4538946 CGCATCCTCAAAAAA GGCGGCAGC GAAG GCCGTCGCT TAGATTTTATGATGC Shewana3_3778 4538243 - 4539106 + | hypothetical protein TERM 5529 4539171 - 4539139 - f 79 -8.6 -4.17762 | gap 1, opp_overlap 4539141 4539143, overlap 4539143 4539148 CATTGTTTAAAATAA CCAATTAAACCCAGC ACTT GCTGGGTTTAAT-GT TTTTACAGGTTCGAG TERM 5530 4539141 - 4539170 + F 100 -12.3 -4.62471 | opp_overlap 4539139 4539143 4539148, overlap 4539143 TTGTTTAAAATAACC AATTAAACCCAGC ACTT GCTGGGTTTAATG TTTTTACAGGTTCGA TERM 5531 4539143 - 4539168 + F 100 -14.9 -3.92577 | opp_overlap 4539139 4539143 4539148, overlap 4539141 GTTTAAAATAACCAA TTAAACCCAGC ACTT GCTGGGTTTAA TGTTTTTACAGGTTC TERM 5532 4539168 - 4539143 - f 100 -14.9 -3.68798 | opp_overlap 4539143 4539141, overlap 4539139 4539148 GTTTAAAATAACCAA TTAAACCCAGC ACTT GCTGGGTTTAA TGTTTTTACAGGTTC TERM 5533 4539163 - 4539148 - f 89 -10.4 -4.05045 | opp_overlap 4539143 4539141, overlap 4539143 4539139 AAATAACCAATTAAA CCCAGC ACTT GCTGGG TTTAATGTTTTTACA TERM 5534 4539206 - 4539257 + F 93 -13.4 -2.67803 | opp_overlap 4539212 4539225, overlap 4539212 TTTGCTATTGTAAGC TATGAAGTGGTTACTAAAATGGTT ACTA AATCATTCAAGTAACCACTTTATA TAGGTTTAGTAACCA TERM 5535 4539251 - 4539212 - f 77 -10.2 -3.22091 | opp_overlap 4539206 4539212, overlap 4539225 ATTGTAAGCTATGAA GTGGTTACTAAAATGGTT ACTA AATCATTCAAGTAACCAC TTTATATAGGTTTAG TERM 5536 4539212 - 4539251 + F 91 -10.2 -4.11295 | opp_overlap 4539212 4539225, overlap 4539206 ATTGTAAGCTATGAA GTGGTTACTAAAATGGTT ACTA AATCATTCAAGTAACCAC TTTATATAGGTTTAG Shewana3_3779 4539288 - 4540502 + | phage integrase family protein Shewana3_3780 4540573 - 4541397 + | hypothetical protein TERM 5537 4541507 - 4541478 - f 81 -10.7 -3.38272 | opp_overlap 4541505 CATCATTAGCCATAA TCACTCCCGAACA ACAT TGAACGGGAGTGA GCATGAACTCATTAA Shewana3_3781 4541504 - 4541731 + | hypothetical protein TERM 5538 4541964 - 4541978 + F 100 -11.4 -5.41143 | opp_overlap 4541964 ACTTTCTGGTGTAAA GCAGGC TTC GCCTGC TTTTTTTAACGAGTG TERM 5539 4541978 - 4541964 - f 89 -11.4 -3.53091 | opp_overlap 4541964 ACTTTCTGGTGTAAA GCAGGC TTC GCCTGC TTTTTTTAACGAGTG Shewana3_3782 4542160 - 4542978 + | hypothetical protein TERM 5540 4543587 - 4543608 + G 79 -11.7 -3.25823 | opp_overlap 4543567 CAGAGGCACTGCTTT TGATCCAGT CCGC ACTGGATCA TTACTATAAAGACAC Shewana3_3783 4543196 - 4543846 + | hypothetical protein Shewana3_3784 4544562 - 4543903 - | hypothetical protein TERM 5541 4546547 - 4546523 - g 73 -10.8 -3.18383 | opp_overlap 4546527 ATCTGGAGCCATCAA GTCAGCTGTA GACAG CACAGCTGAC TTGGCGAATCAAAAT Shewana3_3785 4544823 - 4546913 + | hypothetical protein Shewana3_3786 4546917 - 4547648 + | chemotaxis protein MotB-related protein Shewana3_3787 4547669 - 4549096 + | hypothetical protein TERM 5542 4549876 - 4549865 - g 100 -7.2 -5.26875 | TCTTCAATGAAAAAA CGGC TAAA GCCG CAAAAGAGATTATCA TERM 5543 4550859 - 4550879 + G 75 -9 -3.85165 | overlap 4550860 CTCTCTTAAATTCGG TGAGCAGC ATGGG GCTGCTCG TTTAGATTTGCCCTG TERM 5544 4550860 - 4550878 + G 70 -10.3 -2.90617 | overlap 4550859 TCTCTTAAATTCGGT GAGCAGC ATGGG GCTGCTC GTTTAGATTTGCCCT Shewana3_3788 4549096 - 4552542 + | SNF2-related protein TERM 5545 4552545 - 4552591 + T 100 -15.3 -3.48276 | overlap 4552539 TGTAGTTCGTTAGAC CGTCTAATTGCTGGTGGAGTA AATTC TACACCACCAGCAATTGAGCG TTATCTCGCAACCAC Shewana3_3789 4553277 - 4552570 - | hypothetical protein Shewana3_3790 4556450 - 4553289 - | HsdR family type I site-specific deoxyribonuclease TERM 5546 4554857 - 4554868 + g 82 -7.2 -4.65895 | opp_overlap 4554848 CATCAAGCGATTCGC CCGC CACA GCGG TTTTTACCTCACGAC TERM 5547 4555990 - 4555968 - G 71 -7 -4.12532 | overlap 4555988 CGGCGTAGAGATAAA CGGCGATTTA CAC TCAATCACCG CCAGCGGCAGGCCAT Shewana3_3791 4557121 - 4556447 - | hypothetical protein Shewana3_3792 4557960 - 4557109 - | hypothetical protein TERM 5548 4557795 - 4557769 - G 86 -12.3 -3.82097 | opp_overlap 4557769 CTCAAAGTCATCAAA CGCTGGCTCAG TCACT CCAAGCCAGCG TTGCATTAAGGTCGC Shewana3_3793 4559250 - 4557973 - | restriction modification system DNA specificity subunit TERM 5549 4558491 - 4558481 - G 79 -5.4 -4.92385 | GATACGTAAAGAAAA GGAA TAG TTCC ATCTGGCGAGGTCTT Shewana3_3794 4560967 - 4559243 - | type I restriction-modification system, M subunit TERM 5550 4559705 - 4559716 + g 78 -5.8 -4.88646 | GATTTTCTCAATATC CTGC GGGC GCAG TTTGTTTTGGTTTTT Shewana3_3795 4561118 - 4561792 + | HNH endonuclease Shewana3_3796 4561828 - 4562625 + | hypothetical protein TERM 5551 4562756 - 4562722 - T 88 -3.3 -5.85425 | gap 1, opp_overlap 4562730 4562737, overlap 4562724 TAAACAAATAAAAAA CATTAAAAT-AATTTA TCAA TAAATTGATTTTAATA ACATTTACCCATATA TERM 5552 4562823 - 4562849 + T 100 -15.3 -5.02074 | opp_overlap 4562823 4562829 TTGTGTTATCTAAAA CCAAAAGCCCT TTTTT AGGGCTTTTGG TTTTTTGAAAGCTAG TERM 5553 4562849 - 4562823 - T 100 -15.3 -4.18018 | opp_overlap 4562823, overlap 4562829 TTGTGTTATCTAAAA CCAAAAGCCCT TTTTT AGGGCTTTTGG TTTTTTGAAAGCTAG TERM 5554 4562843 - 4562829 - T 81 -7.1 -4.68645 | opp_overlap 4562823, overlap 4562823 TATCTAAAACCAAAA GCCCT TTTTT AGGGC TTTTGGTTTTTTGAA Shewana3_3797 4563577 - 4562861 - | nucleotidase Shewana3_3798 4564215 - 4563754 - | hypothetical protein Shewana3_3799 4564729 - 4564238 - | hypothetical protein TERM 5555 4564293 - 4564276 - G 70 -4.9 -4.63218 | opp_overlap 4564276 TGGCTCCCAACAAAA TCATTAC CATA GCAATGA CTTCTGTGAATCGAA Shewana3_3800 4564982 - 4565878 + | LysR family transcriptional regulator TERM 5556 4566426 - 4566405 - g 90 -8.8 -4.68511 | opp_overlap 4566402 4566405 4566409 CTCAAGACAAACAAA TCAAGGTC TTTAGT GACCTTGA TGAATTTATTAGTTT Shewana3_3801 4565981 - 4566457 + | hypothetical protein TERM 5557 4566483 - 4566464 - T 100 -10 -4.67123 | opp_overlap 4566464 TCAAAATAACCAAAA GGGTCGAA CAAT TCCGACCC TTTCTTTTACTAAAC TERM 5558 4566464 - 4566483 + T 86 -7.8 -4.72007 | opp_overlap 4566464 TCAAAATAACCAAAA GGGTCGAA CAAT TCCGACCC TTTCTTTTACTAAAC Shewana3_3802 4568448 - 4566493 - | hypothetical protein TERM 5559 4566857 - 4566847 - G 70 -4.6 -4.68994 | opp_overlap 4566855 AGCACCACTTAAAAA CCAC TTA GCGG GGTCTATCTCGTTCT Shewana3_3803 4568675 - 4568445 - | XRE family transcriptional regulator Shewana3_3804 4569951 - 4568836 - | filamentation induced by cAMP protein Fic TERM 5560 4568875 - 4568886 + g 74 -7.2 -4.25104 | overlap 4568873 4568884 CCTCGTACTTCGGCC GCCG GCGT CGGC TTTTACTAAAAAGCC TERM 5561 4569680 - 4569705 + g 74 -3.9 -5.00616 | overlap 4569681 4569682 TGCGCAGTGGTCGGA TACGGTTTGTC TTCG GACACACCGAG TTTTTTAGCCAAGGA TERM 5562 4570043 - 4570013 - H 72 -6.2 -4.33621 | opp_overlap 4570017, overlap 4570009 4570014 4570015 4570032 GAGTCAATTAACAAA CCTATTTGCCTCAC AAG ACGAGGCAAATAAT ATCAACAATCGCCTC TERM 5563 4570042 - 4570014 - H 74 -9.7 -3.1945 | opp_overlap 4570017, overlap 4570009 4570013 4570015 4570032 AGTCAATTAACAAAC CTATTTGCCTCAC AAG ACGAGGCAAATAA TATCAACAATCGCCT TERM 5564 4570041 - 4570015 - H 76 -11 -2.50947 | opp_overlap 4570017, overlap 4570009 4570014 4570013 4570032 GTCAATTAACAAACC TATTTGCCTCAC AAG ACGAGGCAAATA ATATCAACAATCGCC TERM 5565 4570150 - 4570124 - H 70 -7.2 -3.86015 | overlap 4570139 GATTGCCTCTACAAA GCAATACCGACG CAA CGCCAGCTTTGC GCTGCCAAAACCGAC Shewana3_3805 4570262 - 4571080 + | hypothetical protein Shewana3_3806 4572588 - 4571101 - | major facilitator transporter TERM 5566 4572077 - 4572064 - G 74 -3.7 -5.00616 | overlap 4572065 GCGCGCCGCAAAAAA GGCGC CACG GCGAC GCTCGGGCACGATAG TERM 5567 4572598 - 4572613 + r 100 -11.8 -3.90588 | opp_overlap 4572598 AAGCAAAAAACAAAA CGCCCC AAAT GGGGCG TTTGATTAGGGCGTG TERM 5568 4572613 - 4572598 - R 100 -11.8 -5.47846 | opp_overlap 4572598 AAGCAAAAAACAAAA CGCCCC AAAT GGGGCG TTTGATTAGGGCGTG Shewana3_3807 4573707 - 4572643 - | aminoglycoside phosphotransferase TERM 5569 4572816 - 4572831 + g 73 -5.4 -4.60041 | gap 1, opp_overlap 4572807 AAATCACTCGCGCCC CG-AGCC AGA GGCTACG TTTTTCGACCTCAGT Shewana3_3808 4574572 - 4573700 - | hypothetical protein Shewana3_3809 4576214 - 4574718 - | hypothetical protein TERM 5570 4575571 - 4575601 + g 76 -2.8 -5.06816 | gap 2, opp_overlap 4575564, overlap 4575575 TCGAGTAACGCATCT TGCACGACAAAATC AGCAG GATTTTG-CGT-CA TTTTTGTTAACGCAT TERM 5571 4576110 - 4576098 - G 72 -4.1 -4.87037 | overlap 4576099 4576100 AAGATACATTAAAAA GTTCG CCC CAAAC GCGGCGACAGCCAGT TERM 5572 4577088 - 4577100 + G 71 -7.7 -4.07687 | AATATGATTTTATTA TCGTC AAT GACGA TTTTGACACAGCACT Shewana3_3810 4576589 - 4577212 + | guanylate kinase rpoZ 4577271 - 4577549 + | DNA-directed RNA polymerase subunit omega Shewana3_3812 4577593 - 4579695 + | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase Shewana3_3813 4579718 - 4580101 + | putative endoribonuclease L-PSP TERM 5573 4580121 - 4580134 + F 100 -9.5 -5.4833 | CCACCAATTTTACGA GGCGC TTAG GCGCC TTTTTTATTGCCTAA TERM 5574 4581517 - 4581532 + G 80 -4.6 -5.1101 | AAGCAACAGCAGCGG CCTTCG ATCC CGATGG TTTTTTCCATACTGG Shewana3_3814 4580334 - 4581998 + | AMP-dependent synthetase and ligase TERM 5575 4582054 - 4582036 - f 82 -10.3 -3.57971 | opp_overlap 4582036 ACACTCACCTCTAAA GCACACC TTTTC GGTGTGC TTTTTTATGACATAT TERM 5576 4582036 - 4582054 + F 100 -10.3 -5.26918 | opp_overlap 4582036 ACACTCACCTCTAAA GCACACC TTTTC GGTGTGC TTTTTTATGACATAT Shewana3_3815 4582169 - 4583119 + | CaCA family Na(+)/Ca(+) antiporter TERM 5577 4583139 - 4583167 + F 100 -14.7 -3.06515 | opp_overlap 4583144, overlap 4583144 CTGCGCCTTGCCTTA CAAAACACCGGAG CTT CTCCGGTGTTTTA CTTTTAGGCCTAAGA TERM 5578 4583144 - 4583162 + F 100 -14.6 -4.67038 | opp_overlap 4583144, overlap 4583139 CCTTGCCTTACAAAA CACCGGAG CTT CTCCGGTG TTTTACTTTTAGGCC TERM 5579 4583162 - 4583144 - f 100 -14.6 -4.36914 | opp_overlap 4583144 4583139 CCTTGCCTTACAAAA CACCGGAG CTT CTCCGGTG TTTTACTTTTAGGCC Shewana3_3816 4583296 - 4584000 + | TPR repeat-containing protein Shewana3_3817 4584084 - 4585163 + | putative signal transduction histidine kinase TERM 5580 4585327 - 4585295 - g 71 -7.2 -4.08557 | gap 1 CTGCTGAAACAACAA CATTTCGATCTACTG CTAA CAG-ATATCGAAATG CCAGGAAGAACAGGT Shewana3_3818 4585163 - 4585759 + | two component LuxR family transcriptional regulator Shewana3_3819 4586880 - 4585765 - | hypothetical protein Shewana3_3820 4587097 - 4588623 + | Mg chelatase, subunit ChlI Shewana3_3821 4588724 - 4589617 + | phospholipid/glycerol acyltransferase Shewana3_3822 4589625 - 4590566 + | phospholipid/glycerol acyltransferase Shewana3_3823 4591100 - 4590627 - | hypothetical protein TERM 5581 4591727 - 4591711 - g 82 -10.9 -3.95219 | TGCAAACCTTAGAAA GACAACG CCT CGTTGTC CGCGCCCCTCATGTA Shewana3_3824 4591449 - 4592237 + | GntR family transcriptional regulator TERM 5582 4592239 - 4592218 - f 73 -5.9 -4.41348 | CCGCCGCGAAAGAAA CCTTAGCCA ATAT TAACTAAGG CGTTGCGGCCCATAA prpB 4592304 - 4593182 + | 2-methylisocitrate lyase TERM 5583 4593654 - 4593638 - g 82 -7.9 -4.65819 | AAAACCAAATTAAAA GGCATGC GCG GCCTGCC ACAGGCATTAAAAGA TERM 5584 4593929 - 4593917 - g 77 -10.5 -3.59979 | CTGCTGCACGGCAAA GCGCC ATC GGCGC TGCACGCTAAGGTAA Shewana3_3826 4593416 - 4594543 + | methylcitrate synthase TERM 5585 4594581 - 4594553 - f 71 -8.2 -3.551 | gap 1, opp_overlap 4594559, overlap 4594554 4594559 CGTTAATCGACACAA CTGAAACTGGCGC TTAG GCGTCAGTTTC-G CCAACAGAACCCAGT TERM 5586 4594559 - 4594576 + F 73 -9.1 -3.53012 | opp_overlap 4594559 4594553 4594554 TCGACACAACTGAAA CTGGCGC TTAG GCGTCAG TTTCGCCAACAGAAC Shewana3_3827 4594667 - 4597258 + | aconitate hydratase TERM 5587 4597341 - 4597296 - f 73 -9.1 -3.41416 | gap 2, opp_overlap 4597305 4597327, overlap 4597294 4597290 4597305 GCAAAACAAGTAACA TCGCACAAGGGGCGGCGGCTC GACACT GAGGCGCCGCGC-TT-TGCGA CTAACGCAGCGTTTA TERM 5588 4597305 - 4597334 + F 89 -11.3 -3.57144 | opp_overlap 4597296 4597294 4597290 4597305, overlap 4597327 GTAACATCGCACAAG GGGCGGCGGCTCG ACAC TGAGGCGCCGCGC TTTGCGACTAACGCA TERM 5589 4597334 - 4597305 - f 74 -10.6 -2.61735 | opp_overlap 4597305 4597327, overlap 4597296 4597294 4597290 GTAACATCGCACAAG GGGCGGCGGCTC GACACT GAGGCGCCGCGC TTTGCGACTAACGCA TERM 5590 4598429 - 4598407 - g 74 -11.2 -3.06796 | CGGCACTCTAGTCAA CCTCGCCGCC GGC GGTGGCGAGA AGGAAGCTGTGCGCT Shewana3_3828 4597388 - 4598581 + | methylitaconate delta2-delta3-isomerase TERM 5591 4598605 - 4598634 + F 93 -2.9 -6.04953 | overlap 4598620 AAGAGTTCAACCAAA GACCTTGCT TCTCCCCCTTCC GGCAAGGTC TTTTTTTATTTGTCT TERM 5592 4599657 - 4599671 + G 70 -4.3 -4.63218 | GGCAGAGGACGATAT TCCTT ACCTC AAGGA TTTTATTCAAACACC Shewana3_3829 4598860 - 4603377 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 5593 4603414 - 4603392 - T 100 -12.8 -5.43487 | opp_overlap 4603392 4603395 AAACCAGATAAAAAA TAAGGCTCCC TAA AGGAGCCTTA TTTCATTGAATCATT TERM 5594 4603392 - 4603414 + T 100 -12.1 -3.94404 | opp_overlap 4603392, overlap 4603395 AAACCAGATAAAAAA TAAGGCTCC CTAAA GGAGCCTTA TTTCATTGAATCATT TERM 5595 4603395 - 4603411 + T 85 -9.4 -4.09321 | opp_overlap 4603392, overlap 4603392 CCAGATAAAAAATAA GGCTCC CTAAA GGAGCC TTATTTCATTGAATC Shewana3_3830 4604527 - 4603436 - | branched-chain amino acid aminotransferase TERM 5596 4604228 - 4604252 + g 76 -2.7 -5.1356 | AATACAGACAATATC CGCAGAACG ATTCATA CGCTCGGCG TTTTTGTTGATACGG Shewana3_3831 4605541 - 4604684 - | uncharacterized secreted protein Shewana3_3832 4605570 - 4605836 + | transcriptional antiterminator, Rof Shewana3_3833 4605854 - 4606189 + | hypothetical protein TERM 5597 4606298 - 4606324 + T 77 -11 -2.78547 | opp_overlap 4606303, overlap 4606296 4606303 TATGGTTGAGGGCGT GTAAAGCCAAGT TCA ACTTAGCTTTAC TACTTACTGAGATAA Shewana3_3834 4606704 - 4606348 - | endoribonuclease L-PSP Shewana3_3835 4608266 - 4606761 - | Na+/H+ antiporter NhaC Shewana3_3836 4608446 - 4608667 + | hypothetical protein Shewana3_3837 4608876 - 4608664 - | hypothetical protein TERM 5598 4608722 - 4608743 + g 83 -5.1 -5.07486 | opp_overlap 4608722 TTCAGCTCTAAGATA GCCTGCT TCACTTTT GGCAGGC TTTTTCTTGGCAATA TERM 5599 4609076 - 4609043 - R 73 -5.3 -4.73677 | opp_overlap 4609044, overlap 4609039 TTTACAATAAACAAA CGTCAAAAAATTGAC TATT GACATTATTTTGACG CATCGTTAAATTAGC TERM 5600 4609127 - 4609112 - R 100 -9 -4.62783 | TACTCAGGGTAAAAA TGAGCC CTCT GGCTCA AGTCCGTACTTTCCG TERM 5601 4609131 - 4609158 + r 100 -13.6 -6.21477 | gap 1 CCCTCTGGCTCAAGT CCGTACTTTCCGA TTA TCGGAA-GTACGG TTTTTTTTTACTCTT TERM 5602 4609265 - 4609251 - R 95 -7.1 -5.4833 | opp_overlap 4609251 TCAGCCAATAAAAAA GGAGC GCTAG GCTCC TTAAATTTTATGCTC Shewana3_3838 4609950 - 4609339 - | DSBA oxidoreductase Shewana3_3839 4611070 - 4610078 - | serine/threonine protein kinase Shewana3_3840 4611443 - 4611126 - | hypothetical protein Shewana3_3841 4612885 - 4611431 - | hypothetical protein TERM 5603 4612056 - 4612046 - G 70 -8.2 -3.72576 | opp_overlap 4612045 4612046 GGGCTGCTGACCAAA GGCG TAA CGCC CTTCTGGGTCGGAAT TERM 5604 4612560 - 4612576 + g 70 -9.3 -3.6502 | opp_overlap 4612559 4612557 4612560 CCATGGCGAGAATAG GGCGTCG GCC CGCCGCC TTTGAGTGCCACATC Shewana3_3842 4613247 - 4612897 - | hypothetical protein TERM 5605 4613283 - 4613268 - R 100 -9 -5.626 | opp_overlap 4613267 4613268 TAGCCCATAAAAAAA GCGAAC CTTA GTTCGC CTTTTGCGCGGTAAG Shewana3_3843 4614334 - 4613423 - | hypothetical protein TERM 5606 4614694 - 4614705 + G 70 -3 -4.80882 | ACAGAGCAACAAGTT GATT TAAA AATC TTTTTAATGTCAGAT TERM 5607 4614847 - 4614830 - g 74 -8.3 -4.09685 | TTTTACTCTGTAAAA CCTGCGC CCAA GCGCGGG GCGTTAACCCCGAAA Shewana3_3844 4614586 - 4614945 + | DsrE family protein Shewana3_3845 4615050 - 4615451 + | hypothetical protein TERM 5608 4615971 - 4616000 + G 80 -2.1 -5.45726 | overlap 4615973 4615974 GAGTCTGGCCTTGCC TCTGTTGCTGTTT ATCC AAACGGCGACCTA TTTTTTTGCACTCTG Shewana3_3846 4615507 - 4616439 + | hypothetical protein Shewana3_3847 4616578 - 4617159 + | hypothetical protein TERM 5609 4617185 - 4617219 + F 100 -13 -4.37886 | opp_overlap 4617190, overlap 4617190 ATGTCGTCCCCATTA AAAAACCTCCTATTCC ACA GGATTAGGAGGTTTTC TTTTATCCCCGATAG TERM 5610 4617190 - 4617214 + F 100 -12.9 -5.18371 | opp_overlap 4617190, overlap 4617185 GTCCCCATTAAAAAA CCTCCTATTCC ACA GGATTAGGAGG TTTTCTTTTATCCCC TERM 5611 4617214 - 4617190 - f 100 -12.9 -5.14563 | opp_overlap 4617190 4617185 GTCCCCATTAAAAAA CCTCCTATTCC ACA GGATTAGGAGG TTTTCTTTTATCCCC TERM 5612 4617623 - 4617633 + F 95 -2.6 -6.10295 | opp_overlap 4617608, overlap 4617628 TTCACATAACAAGTG TTTT GTA AAAA TTTTTTTTGTATTAG Shewana3_3848 4618877 - 4619962 + | RND family efflux transporter MFP subunit Shewana3_3849 4619966 - 4622995 + | acriflavin resistance protein TERM 5613 4623046 - 4622989 - T 100 -17.9 -4.24404 | opp_overlap 4623003, overlap 4623001 4623003 ATTTAAAGCTGAAAA TCCTTAGCACAACACTTGCCGTGTGAC ATTA GTCACACGGCAAGTTGTGGACTAATGA GGCTAAGTATACCTT TERM 5614 4623034 - 4623001 - T 100 -18.3 -3.41795 | opp_overlap 4623003, overlap 4622989 4623003 AAATCCTTAGCACAA CACTTGCCGTGTGAC ATTA GTCACACGGCAAGTT GTGGACTAATGAGGC TERM 5615 4623032 - 4623003 - T 100 -20.9 -3.27653 | opp_overlap 4623003, overlap 4623001 4622989 ATCCTTAGCACAACA CTTGCCGTGTGAC ATTA GTCACACGGCAAG TTGTGGACTAATGAG TERM 5616 4623003 - 4623032 + T 100 -20.9 -3.34043 | opp_overlap 4623001 4622989 4623003 ATCCTTAGCACAACA CTTGCCGTGTGAC ATTA GTCACACGGCAAG TTGTGGACTAATGAG Shewana3_3850 4623644 - 4623021 - | TetR family transcriptional regulator TERM 5617 4623764 - 4623744 - H 77 -3.9 -5.13473 | opp_overlap 4623745 4623748, overlap 4623748 AGCACACTCAAAAAA GCAAGCTGA ATT TCAGCATGT TTCGCACTAACATTA TERM 5618 4623760 - 4623748 - H 74 -7.7 -3.94773 | opp_overlap 4623748 4623745, overlap 4623744 CACTCAAAAAAGCAA GCTGA ATT TCAGC ATGTTTCGCACTAAC Shewana3_3851 4624559 - 4625701 + | diguanylate cyclase TERM 5619 4626098 - 4626123 + T 72 -6.1 -4.34771 | opp_overlap 4626098 ATTGAAAATAAAAAA CCTCTCCCCAT AATA ATGGAAAGAGG TTTTGCTGCCTTTTC TERM 5620 4626123 - 4626098 - T 100 -10.5 -5.80951 | opp_overlap 4626098 ATTGAAAATAAAAAA CCTCTCCCCAT AATA ATGGAAAGAGG TTTTGCTGCCTTTTC Shewana3_3852 4627190 - 4626579 - | CRISPR-associated Csy4 family protein Shewana3_3853 4628241 - 4627192 - | CRISPR-associated Csy3 family protein Shewana3_3854 4630356 - 4628251 - | hypothetical protein Shewana3_3855 4631582 - 4630350 - | hypothetical protein TERM 5621 4631611 - 4631597 - R 80 -5 -5.1675 | TCACCCACCAAAAAA CTAAGA AAT CCTTAG CAAAACAACATAGAG TERM 5622 4631791 - 4631818 + r 75 -7.1 -4.38927 | gap 1, opp_overlap 4631787 4631788, overlap 4631788 CTATAGATTAACGCC GTATT-CAGCGG CTTGT CCGCTGCAATGC TTTGTTATGTAAGGA Shewana3_3856 4633280 - 4631838 - | hypothetical protein Shewana3_3857 4634691 - 4633270 - | hypothetical protein Shewana3_3858 4635972 - 4635670 - | hypothetical protein Shewana3_3859 4636524 - 4636213 - | XRE family transcriptional regulator TERM 5623 4636432 - 4636449 + g 82 -7.7 -4.68593 | overlap 4636434 GCCCACTTCCATACC TAGCTGG ATGC CCAGCTG TTTTTGACTAATCCC TERM 5624 4636434 - 4636447 + g 72 -8.1 -3.95883 | overlap 4636432 CCACTTCCATACCTA GCTGG ATGC CCAGC TGTTTTTGACTAATC TERM 5625 4636553 - 4636567 + H 73 -2.8 -5.15969 | opp_overlap 4636553 TTTGTCCTTTGATAA CTCAGA TTG TCTTAG TTTTTTGACTTAAGG TERM 5626 4636586 - 4636602 + H 78 -5.1 -5.00765 | opp_overlap 4636585, overlap 4636587 TTTGACTTAAGGTAT ACTAAGG AAT CCTTAGC TTTTTATCGTTAGTT TERM 5627 4636587 - 4636601 + H 73 -8.6 -3.58832 | opp_overlap 4636585, overlap 4636586 TTGACTTAAGGTATA CTAAGG AAT CCTTAG CTTTTTATCGTTAGT Shewana3_3860 4636729 - 4637265 + | hypothetical protein Shewana3_3861 4638337 - 4637378 - | hypothetical protein Shewana3_3862 4640247 - 4638394 - | integrase catalytic subunit Shewana3_3863 4640873 - 4640244 - | hypothetical protein TERM 5628 4640975 - 4641003 + r 95 -7.6 -5.04175 | opp_overlap 4640975 4640977, overlap 4640977 TAATATTAAAGAAAA TAGCTTTTGTAA CATGA TTACAAAAGCCA TTTTTATGTCATTGA TERM 5629 4641003 - 4640975 - R 100 -10.5 -4.99568 | opp_overlap 4640975 4640977, overlap 4640977 TAATATTAAAGAAAA TAGCTTTTGTAAC ATG ATTACAAAAGCCA TTTTTATGTCATTGA TERM 5630 4640977 - 4641001 + r 75 -10.2 -2.75768 | opp_overlap 4640975 4640977, overlap 4640975 ATATTAAAGAAAATA GCTTTTGTAA CATGA TTACAAAAGC CATTTTTATGTCATT TERM 5631 4641001 - 4640977 - R 93 -10.9 -4.09862 | opp_overlap 4640977 4640975, overlap 4640975 ATATTAAAGAAAATA GCTTTTGTAAC ATG ATTACAAAAGC CATTTTTATGTCATT Shewana3_3864 4641688 - 4641038 - | hypothetical protein TERM 5632 4641756 - 4641707 - R 91 -8.1 -4.75404 | gap 1, opp_overlap 4641717, overlap 4641709 4641710 4641717 AAATTCGATGAAAAA CACGCTAACACAGGGGAATAAATT TAA ACTTAATTCCCCTGT-TTAGCTTA AAGGCGTTACCAACC TERM 5633 4641754 - 4641709 - R 77 -8.5 -3.98658 | gap 1, opp_overlap 4641717, overlap 4641707 4641710 4641717 ATTCGATGAAAAACA CGCTAACACAGGGGAATAAATT TAA ACTTAATTCCCCTGT-TTAGCT TAAAGGCGTTACCAA TERM 5634 4641753 - 4641710 - R 86 -12 -2.98472 | gap 1, opp_overlap 4641717, overlap 4641709 4641707 4641717 TTCGATGAAAAACAC GCTAACACAGGGGAATAAATT TAA ACTTAATTCCCCTGT-TTAGC TTAAAGGCGTTACCA TERM 5635 4641747 - 4641717 - R 74 -9.8 -3.12892 | opp_overlap 4641717, overlap 4641710 4641709 4641707 AAAAACACGCTAACA CAGGGGAATAAATT TAA ACTTAATTCCCCTG TTTAGCTTAAAGGCG TERM 5636 4641717 - 4641747 + r 84 -9.8 -3.75153 | opp_overlap 4641717 4641710 4641709 4641707 AAAAACACGCTAACA CAGGGGAATAAATT TAA ACTTAATTCCCCTG TTTAGCTTAAAGGCG Shewana3_3865 4642800 - 4641763 - | acyltransferase 3 Shewana3_3866 4644199 - 4642802 - | hypothetical protein TERM 5637 4644253 - 4644237 - R 72 -8 -3.79419 | overlap 4644235 TGGGTTCACAAAACA GCGCTA GCATA TAGCGC AATTAACCAATAGTG Shewana3_3867 4644728 - 4644378 - | hypothetical protein Shewana3_3868 4645518 - 4644760 - | AraC family transcriptional regulator TERM 5638 4644790 - 4644804 + g 79 -11.4 -3.55444 | ATACGCGGCGGGTGT CAGGCC AAA GGCCTG TTTAAAGCGTGCCGA Shewana3_3869 4646084 - 4645536 - | PBP family phospholipid-binding protein TERM 5639 4646214 - 4646169 - H 76 -9.3 -3.53091 | opp_overlap 4646179, overlap 4646178 AGTTTCTTCCCTAAA TGCTCAAAATTGAGAAAAAGT GTCG ACTTTTTGTCATCTTTAAGCA CTCGAGTGATTTTGT Shewana3_3870 4646566 - 4646670 + | hypothetical protein TERM 5640 4648444 - 4648413 - g 72 -3.8 -4.8543 | gap 1, opp_overlap 4648428 GAACCCGGACAAAAA TGGCACTCCTTCG ACGGTTA CGAAAAAG-GCCA ATATTTCGTAGACCC Shewana3_3871 4646982 - 4649144 + | ornithine decarboxylase TERM 5641 4649265 - 4649252 - g 70 -2.4 -4.96388 | opp_overlap 4649252 AATCAGCAAATAAAA TTGG TGTCGT CCAA TTAACTATTATCACC Shewana3_3872 4649230 - 4650549 + | putrescine transporter TERM 5642 4650650 - 4650603 - f 72 -8 -3.84852 | gap 2 GAAACATAAAACCAA TCCGTCTTCAGGGACCTTAAGC CACAGT GCTTAAGGTCCCC--AGACAAA ACTTGCCTATTTTCG TERM 5643 4651274 - 4651261 - g 70 -2.3 -5.0538 | TGTCACCTTAAAAAA CGATG ACGG CAGCG AAATGACCAACTCTG Shewana3_3873 4650674 - 4651828 + | porin TERM 5644 4651991 - 4652019 + T 95 -7.5 -5.43866 | TACCATCATCTCTAC GCCACTCCA AATAGGTTTAC TGGAGTGGC TTTTTTTCGCCGTTA TERM 5645 4652050 - 4652061 + T 73 -5.8 -4.41348 | CTTGGCGTGCTGACG GCCT GAAG AGGC TTTGTTTCCGCGGCC Shewana3_3874 4654377 - 4652032 - | hypothetical protein TERM 5646 4652145 - 4652132 - G 87 -9.5 -4.2828 | opp_overlap 4652141 CCCGACTGACCAAAA GGCGC CTTA GCGCC CGGACGGCTGCTCTT Shewana3_3875 4654988 - 4654590 - | hypothetical protein TERM 5647 4655960 - 4655972 + G 70 -9.1 -3.51924 | CGCTGGGCAATTTGG TCGGC GGT GCCGA TTCTCTCGATGGCGC TERM 5648 4656279 - 4656289 + G 79 -5.4 -4.96106 | opp_overlap 4656270, overlap 4656286 ACCAATCCCATATTG GATC GCA GATC TTTTTGATCTTTATG Shewana3_3876 4655144 - 4656364 + | hypothetical protein TERM 5649 4656374 - 4656400 + F 75 -8.7 -3.61517 | gap 1 CTGTAACATCCCCTC TCAGGGCTGGTG CCAA CTCCAGCCC-GA TTCTTAAAGCAACCT TERM 5650 4658028 - 4658059 + G 76 -7.2 -4.29508 | opp_overlap 4658019, overlap 4658029 TAACGAGGTCAGCGG CCCGCTTGCCAGTA TAGG TATTGGCGCGCGGA TTTATTCCTCTCGCT TERM 5651 4658029 - 4658058 + G 71 -10.7 -3.16982 | opp_overlap 4658019, overlap 4658028 AACGAGGTCAGCGGC CCGCTTGCCAGTA TAGG TATTGGCGCGCGG ATTTATTCCTCTCGC Shewana3_3877 4656538 - 4658178 + | hypothetical protein Shewana3_3878 4658311 - 4658817 + | hypothetical protein TERM 5652 4658841 - 4658851 + T 75 -5.4 -4.75472 | CGACAGATAGATAGG GAAG ACT CTTC TTTTATTGCTATCCA TERM 5653 4658920 - 4658894 - T 100 -19.6 -5.33405 | opp_overlap 4658894 CTCAGCAAATAAAAA GCCCGTTTACCT AAA AGGTAAACGGGC TTTTTATTGAATTTA TERM 5654 4658894 - 4658920 + T 100 -19.6 -5.16151 | opp_overlap 4658894 CTCAGCAAATAAAAA GCCCGTTTACCT AAA AGGTAAACGGGC TTTTTATTGAATTTA Shewana3_3879 4660207 - 4659362 - | hypothetical protein TERM 5655 4661659 - 4661638 - g 73 -5.9 -4.46656 | gap 1, overlap 4661643 GCGACAAGATGAAAA CCACAGTGCA GGA TGCACT-CGG TGTCCGTGATAGCCA TERM 5656 4661688 - 4661676 - g 71 -10.5 -3.12351 | GTCCGTGATAGCCAA GCGCG TAT CGCGC GGATAAAGGAGCTGC Shewana3_3880 4660296 - 4662179 + | LppC family lipoprotein Shewana3_3881 4662176 - 4662502 + | hypothetical protein Shewana3_3882 4662609 - 4663202 + | phosphoheptose isomerase Shewana3_3883 4663199 - 4663765 + | transport-associated TERM 5657 4663769 - 4663801 + T 71 -9.1 -3.33261 | opp_overlap 4663767 4663770, overlap 4663770 TACATCGAATAACCG ATTGAGCCTAAGCCC TTA GGGTTTAGGCTCGCC TTCTACCGCTTCCAG TERM 5658 4663770 - 4663800 + T 88 -12.6 -2.59742 | opp_overlap 4663770 4663767, overlap 4663769 ACATCGAATAACCGA TTGAGCCTAAGCCC TTA GGGTTTAGGCTCGC CTTCTACCGCTTCCA Shewana3_3884 4664704 - 4663784 - | hypothetical protein TERM 5659 4664495 - 4664467 - G 100 -9.6 -5.71638 | CAATAATTAAAAAAA GCGCGCCAAC CGAGCCTAT GTTGGCACGC CAAAGGTGGACCGAA Shewana3_3885 4664825 - 4665697 + | LysR family transcriptional regulator TERM 5660 4666012 - 4666033 + T 93 -12.3 -3.19003 | opp_overlap 4666012 AACAGACATAAAAAA GCCGACCTA AGAA TGGGTCGGC TTCATCGAGTGTTAT TERM 5661 4666033 - 4666012 - T 100 -10.1 -5.46276 | opp_overlap 4666012 AACAGACATAAAAAA GCCGACCTA AGAA TGGGTCGGC TTCATCGAGTGTTAT Shewana3_3886 4667069 - 4666071 - | tryptophanyl-tRNA synthetase Shewana3_3887 4667789 - 4667106 - | phosphoglycolate phosphatase Shewana3_3888 4668466 - 4667789 - | ribulose-5-phosphate 3-epimerase TERM 5662 4667904 - 4667886 - G 73 -10.2 -3.3353 | opp_overlap 4667886, overlap 4667884 4667882 CCGGCGACAAACATA TCGGCGCC TGC GGCGGCGA TTTCAGCAATGTTAT TERM 5663 4667886 - 4667904 + g 77 -10.2 -3.57883 | opp_overlap 4667886 4667884 4667882 CCGGCGACAAACATA TCGGCGCC TGC GGCGGCGA TTTCAGCAATGTTAT Shewana3_3889 4668729 - 4669094 + | hypothetical protein Shewana3_3890 4669094 - 4669279 + | hypothetical protein Shewana3_3891 4670143 - 4669304 - | DNA adenine methylase TERM 5664 4669668 - 4669678 + g 79 -8.2 -4.42806 | ATGCACTTAAACTCG GCGC GCT GCGC TTTCTTTGAAAATGC TERM 5665 4669910 - 4669935 + g 71 -5.4 -4.48902 | gap 1 GACGAATAGCTTCTT GGCC-GCCG CAATGTACT CGGCAGGCC TTTCTTTCACTATGT Shewana3_3892 4671607 - 4670192 - | sporulation domain-containing protein Shewana3_3893 4672705 - 4671626 - | 3-dehydroquinate synthase Shewana3_3894 4673226 - 4672711 - | shikimate kinase I TERM 5666 4673426 - 4673400 - R 100 -13.9 -3.59698 | opp_overlap 4673404, overlap 4673404 GTATTTCAGACACAA TAAAGCCAGCA AGGAA TGCTGGCTTTA TTCGACTCGTAACAA TERM 5667 4673404 - 4673422 + r 91 -10.3 -4.18934 | opp_overlap 4673400 4673404 TTCAGACACAATAAA GCCAGCA AGGAA TGCTGGC TTTATTCGACTCGTA TERM 5668 4673422 - 4673404 - R 100 -10.3 -4.42974 | opp_overlap 4673404, overlap 4673400 TTCAGACACAATAAA GCCAGCA AGGAA TGCTGGC TTTATTCGACTCGTA Shewana3_3895 4675500 - 4673446 - | type IV pilus secretin PilQ TERM 5669 4675484 - 4675465 - G 74 -2.2 -5.0916 | overlap 4675471 GCCTGAAGATAAAAA CGATAA CGGGATTT TTATCG CGGCAGAAGATTTCA Shewana3_3896 4676037 - 4675522 - | methyl-accepting chemotaxis sensory transducer TERM 5670 4675792 - 4675804 + g 70 -3.3 -4.79223 | overlap 4675801 ACGGCGTTTCAAATC CGGCT GTA AGCAG TTTTTGCTAGTATCA Shewana3_3897 4676663 - 4676037 - | pilus assembly protein, PilO Shewana3_3898 4677244 - 4676660 - | fimbrial assembly family protein Shewana3_3899 4678311 - 4677232 - | type IV pilus assembly protein PilM Shewana3_3900 4678503 - 4681022 + | 1A family penicillin-binding protein TERM 5671 4681035 - 4681074 + T 81 -10.9 -3.3482 | opp_overlap 4681023 4681046, overlap 4681039 4681046 TAAGCCTCTGTGACA GAAACAAAAAACGCGAC CCTAGA GTCGCGTTTTTTATTAC TTGATTAAAGCATTA TERM 5672 4681039 - 4681070 + T 80 -10.3 -3.45366 | opp_overlap 4681046, overlap 4681035 4681046 CCTCTGTGACAGAAA CAAAAAACGCGAC CCTAGA GTCGCGTTTTTTA TTACTTGATTAAAGC TERM 5673 4681063 - 4681046 - T 100 -9.1 -5.76237 | opp_overlap 4681039 4681035 4681046 GACAGAAACAAAAAA CGCGACC CTAG AGTCGCG TTTTTTATTACTTGA TERM 5674 4681046 - 4681063 + T 100 -8.4 -5.5604 | opp_overlap 4681046, overlap 4681039 4681035 GACAGAAACAAAAAA CGCGAC CCTAGA GTCGCG TTTTTTATTACTTGA Shewana3_3901 4682454 - 4681087 - | argininosuccinate lyase TERM 5675 4682532 - 4682518 - R 100 -12.8 -5.47431 | opp_overlap 4682518 4682524 TTAAGATATAAAAAA GGGCGC TAG GCGCCC TTTGAGTCTGCCTAT TERM 5676 4682518 - 4682532 + r 100 -12.8 -3.72141 | opp_overlap 4682518, overlap 4682524 TTAAGATATAAAAAA GGGCGC TAG GCGCCC TTTGAGTCTGCCTAT Shewana3_3902 4683770 - 4682547 - | argininosuccinate synthase Shewana3_3903 4684736 - 4683831 - | ornithine carbamoyltransferase TERM 5677 4684211 - 4684191 - G 77 -9.7 -3.79747 | opp_overlap 4684191 GTAGCCATCAGGAAA GTGACCCGC AGG GCAGATCAC TGTCATGGTGGCACC TERM 5678 4684687 - 4684705 + g 70 -9.6 -3.30972 | opp_overlap 4684682 4684687 GCTAAGGTAATCAGA TCCAGCAA CTG TTGCTGGG TTAACTCTTTTATCG Shewana3_3904 4685531 - 4684749 - | acetylglutamate kinase argC 4686543 - 4685563 - | N-acetyl-gamma-glutamyl-phosphate reductase TERM 5679 4686885 - 4686902 + H 74 -4.1 -5.06414 | opp_overlap 4686886, overlap 4686886 TTATCTATGGATGAA AGACTGA AAAA TCAGTCC TTTTTATTAACACCG TERM 5680 4686901 - 4686886 - H 72 -7.6 -3.767 | opp_overlap 4686885 4686886 TATCTATGGATGAAA GACTGA AAAA TCAGTC CTTTTTATTAACACC TERM 5681 4686886 - 4686901 + H 70 -7.6 -3.63367 | opp_overlap 4686886, overlap 4686885 TATCTATGGATGAAA GACTGA AAAA TCAGTC CTTTTTATTAACACC TERM 5682 4687125 - 4687176 + H 72 -9.6 -3.10589 | gap 1, opp_overlap 4687127 TGCTAGCGGGCTATA TACCCAAGCGACCTGAAGAT-AGGA TTC TCATCACCTACAGGTTGTTTGGGTA TATTGCGGATTTTTA Shewana3_3906 4687214 - 4689883 + | phosphoenolpyruvate carboxylase Shewana3_3907 4689883 - 4690428 + | hypothetical protein TERM 5683 4690456 - 4690483 + T 74 -10 -3.15544 | opp_overlap 4690462, overlap 4690462 CAAACCATTCACCAT AAAAAATGCTCC CTCG GGAGCATTTTTG TTAATCCAGCTAGAC TERM 5684 4690462 - 4690477 + T 100 -9 -5.1356 | opp_overlap 4690462, overlap 4690456 ATTCACCATAAAAAA TGCTCC CTCG GGAGCA TTTTTGTTAATCCAG TERM 5685 4690477 - 4690462 - T 100 -9 -5.31877 | opp_overlap 4690456 4690462 ATTCACCATAAAAAA TGCTCC CTCG GGAGCA TTTTTGTTAATCCAG Shewana3_3908 4691803 - 4690526 - | competence/damage-inducible protein CinA TERM 5686 4690634 - 4690654 + g 73 -5.3 -4.62168 | opp_overlap 4690635, overlap 4690635 TAAGCTACGCACTAA ATCCCGCGA ACG TCGCGGCAG TTTTATCATTTGGCT TERM 5687 4690653 - 4690635 - G 73 -8.8 -3.76968 | opp_overlap 4690635 4690634 AAGCTACGCACTAAA TCCCGCGA ACG TCGCGGCA GTTTTATCATTTGGC TERM 5688 4692012 - 4692001 - R 78 -5.8 -4.82333 | ATAACAATCTAAAAA TGGC AAAC GCCA AATGCAAAAAAGCCA TERM 5689 4692017 - 4692049 + r 83 -9.2 -3.90856 | opp_overlap 4692024, overlap 4692020 4692024 GGCAAACGCCAAATG CAAAAAAGCCAGCT TATGC AGCTGGCTTCATTG TTTAATTAGGCGCTT TERM 5690 4692042 - 4692024 - R 100 -10.3 -5.22039 | opp_overlap 4692020 4692017 4692024 GCCAAATGCAAAAAA GCCAGCT TATGC AGCTGGC TTCATTGTTTAATTA TERM 5691 4692024 - 4692042 + r 82 -10.3 -3.65446 | opp_overlap 4692024, overlap 4692020 4692017 GCCAAATGCAAAAAA GCCAGCT TATGC AGCTGGC TTCATTGTTTAATTA TERM 5692 4693461 - 4693433 - R 72 -8.1 -3.85698 | TGTGTTTTTGATAAA CAGTTGCAGCCAC CTG GTATCTGCGACTG CCGTCAGCTTAGGGA TERM 5693 4693915 - 4693931 + r 85 -9.4 -4.08546 | overlap 4693897 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 5694 4694713 - 4694725 + r 83 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 5695 4695293 - 4695333 + r 84 -2.7 -5.63374 | opp_overlap 4695300 4695305 4695307 4695309, overlap 4695307 GGACTCGCCTTAGAC TTGAATATTCAAGACACTT AAA AAGTGTTTTAAGAACTCAA TTTTTTTCGTATTAA TERM 5696 4697160 - 4697182 + r 70 -7.1 -3.76952 | gap 1 TGATTTAAATTTTGA TTACTC-GCC AAAC GGCAGAGTAA TTTCGATTAACTCAA TERM 5697 4697288 - 4697302 + r 73 -8.6 -3.71917 | TCAGCGGGTCAGGGC TGCGTA TTC TACGCA TTTCCCATTTGGCGT TERM 5698 4697743 - 4697697 - R 91 -11.9 -3.42659 | gap 1, opp_overlap 4697738, overlap 4697691 4697698 AGGTAAATAGAGGAA GCCGCGACCTTATACTTATATA GCTA TATAAAAGTATAAGGTCGTG-C AACGCGCGCTCACTT TERM 5699 4697743 - 4697698 - R 83 -12.1 -2.64872 | opp_overlap 4697738, overlap 4697691 4697697 GGTAAATAGAGGAAG CCGCGACCTTATACTTATATA GCTA TATAAAAGTATAAGGTCGTGC AACGCGCGCTCACTT Shewana3_3909 4698670 - 4697765 - | DNA binding domain-containing protein TERM 5700 4698143 - 4698164 + g 72 -9.5 -3.41325 | overlap 4698141 ACTGACCCAACGCCA GGGTAAGGT GAGT ACCTTATCC TCTTCTTGGCATCTG Shewana3_3910 4699623 - 4698727 - | formate dehydrogenase accessory protein FdhD, putative Shewana3_3911 4699920 - 4700384 + | hypothetical protein TERM 5701 4701036 - 4701010 - g 79 -8.7 -4.14739 | TGACCTACCCCAAAA TGCACCAGAGC CAGTC GCTCAGATGCA AAAGCCTGTTGTTTA Shewana3_3912 4700384 - 4701052 + | hypothetical protein Shewana3_3913 4701239 - 4702900 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_3914 4702911 - 4703588 + | cytoplasmic chaperone TorD family protein TERM 5702 4703697 - 4703682 - f 100 -9 -4.82901 | CCTTTGCCACAAAAA GGAAGC TTAG GCTTCC ACAGTAACCGAGGTG Shewana3_3915 4703756 - 4703953 + | hypothetical protein Shewana3_3916 4703971 - 4706823 + | formate dehydrogenase alpha subunit TERM 5703 4707282 - 4707267 - g 76 -7.6 -4.35483 | opp_overlap 4707267, overlap 4707263 GCCGAGCACAAGAAA TACGGT GCAA ACCGTA TTGCTGAAGGCAAGC Shewana3_3917 4706850 - 4707446 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 5704 4707478 - 4707457 - f 95 -13.1 -3.16534 | ACTAAGCAGAGTGAA GGTTAGGGA GTCA TCCCTAACC TCTGGCAAGGAGTGA Shewana3_3918 4707496 - 4708524 + | formate dehydrogenase gamma subunit TERM 5705 4708555 - 4708573 + F 100 -12.4 -5.47218 | opp_overlap 4708555 TTACCCCAATAAAAA CACCTCGC AGT GCGGGGTG TTTTTTTACCTAGAC TERM 5706 4708573 - 4708555 - f 100 -10.2 -5.08601 | opp_overlap 4708555 TTACCCCAATAAAAA CACCTCGC AGT GCGGGGTG TTTTTTTACCTAGAC Shewana3_3919 4708905 - 4709105 + | hypothetical protein TERM 5707 4709885 - 4709866 - g 78 -3.6 -5.19879 | gap 1 CGCCAAAGAGAAAAA CAACG-CGA AAA TCATCGTTG TTGACCCACGTTTCT TERM 5708 4710844 - 4710830 - g 79 -7.1 -4.62069 | CGTTTAGCGCAAAAA CTCGG TATCG CCGAG CAATACACTAAACGC Shewana3_3920 4709123 - 4711975 + | formate dehydrogenase alpha subunit TERM 5709 4712098 - 4712079 - g 76 -6.4 -4.66609 | CACCGCATGTAAAAA CGAAAACG ATTC CGCTCTCG AGTGGGGTATCCAAC TERM 5710 4712203 - 4712223 + G 79 -11.9 -3.28712 | opp_overlap 4712220, overlap 4712192 4712191 GACGCGCCATGTATG GCGGTTTGC CCA GCAAACTGC TTCTACAGAACCGAA Shewana3_3921 4712005 - 4712574 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 5711 4712634 - 4712601 - f 77 -11.2 -2.87564 | gap 2 GGATCTGTCCACAGA CTTAGCTTGGCGCCTG CTAG CAGGCGCCA--CTAAG CGAGAGAGGATGTAT Shewana3_3922 4712651 - 4713634 + | formate dehydrogenase gamma subunit TERM 5712 4713655 - 4713676 + T 100 -14.5 -5.64274 | opp_overlap 4713655 GCTGAAAACAAAAAA CCTCCACAG CATG CTGTGGAGG TTTTTTTATCGGTAA TERM 5713 4713676 - 4713655 - T 100 -14.5 -5.79595 | opp_overlap 4713655 GCTGAAAACAAAAAA CCTCCACAG CATG CTGTGGAGG TTTTTTTATCGGTAA Shewana3_3923 4715772 - 4713715 - | TonB-dependent receptor TERM 5714 4716100 - 4716119 + H 73 -2.9 -5.1615 | gap 1 ACATTTGTAAGTTTT GCGATCTG CCTCA CA-ATCGC TTTTTTGCCTGTTAA TERM 5715 4717385 - 4717371 - g 70 -4.2 -4.6902 | opp_overlap 4717383, overlap 4717373 4717383 TGATAAGTCGAAAAA GGCTGT CGA ACAGGC GGCAAATACTGTCGT Shewana3_3924 4716400 - 4717983 + | methyl-accepting chemotaxis sensory transducer TERM 5716 4718034 - 4718009 - T 74 -10.5 -2.58579 | opp_overlap 4718007 4718006, overlap 4718008 CTAAGTCGTTACAAT GGCCTAATATC GCAA GATGTTAGGCC GAACTTTTTTAGAGC Shewana3_3925 4719012 - 4718083 - | bile acid:sodium symporter TERM 5717 4718379 - 4718361 - G 74 -7.4 -4.26344 | ACACCGCGAGTAAAA TCACAGGC CCC ACCTGCGA AAATTGCCCTGCATT TERM 5718 4719705 - 4719725 + G 77 -9.7 -3.75535 | AAAGAGATGGAGATG GTCAAAGCC TTA GGCTATGAC TTTGAATCTATGTAC Shewana3_3926 4719399 - 4720736 + | coproporphyrinogen III oxidase TERM 5719 4720776 - 4720752 - f 80 -11.5 -2.71483 | opp_overlap 4720757, overlap 4720757 ATATCGGTTGAACCA CAAAAGGCCCA TGA TGGGCCTTTTT GTTAGCGCCATTTCA TERM 5720 4720757 - 4720771 + F 100 -11.4 -5.06414 | opp_overlap 4720752 4720757 GGTTGAACCACAAAA GGCCCA TGA TGGGCC TTTTTGTTAGCGCCA TERM 5721 4720771 - 4720757 - f 100 -11.4 -4.5442 | opp_overlap 4720757, overlap 4720752 GGTTGAACCACAAAA GGCCCA TGA TGGGCC TTTTTGTTAGCGCCA Shewana3_3927 4720852 - 4721085 + | hypothetical protein Shewana3_3928 4721114 - 4722052 + | hypothetical protein TERM 5722 4722077 - 4722061 - T 100 -9.4 -5.37865 | opp_overlap 4722061 TGAATAATCAAAAAA GCCAGC TAAAT GCTGGC TTTCTGTATTAAGCG TERM 5723 4722061 - 4722077 + T 85 -9.4 -4.2074 | opp_overlap 4722061 TGAATAATCAAAAAA GCCAGC TAAAT GCTGGC TTTCTGTATTAAGCG Shewana3_3929 4724101 - 4722110 - | enterobactin receptor protein Shewana3_3930 4724223 - 4725185 + | LysR family transcriptional regulator Shewana3_3931 4725265 - 4726137 + | patatin Shewana3_3932 4727065 - 4726130 - | transcriptional regulator TERM 5724 4726852 - 4726823 - G 73 -8.7 -3.72576 | gap 1, overlap 4726844 GTCTGGCCGAGTAAA TTGCGCTAATTGCT GTA AGCA-TTGGCGCAA GTCGGGCGCCAGCGA Shewana3_3933 4727920 - 4727066 - | hypothetical protein TERM 5725 4728259 - 4728247 - g 87 -4.7 -5.47159 | opp_overlap 4728247 TTTGAAGAGAAAAAA CTGCG CCG CGCGG GCCTAGATTATGCCG Shewana3_3934 4728118 - 4728582 + | RNA methyltransferase TERM 5726 4728841 - 4728872 + T 73 -8.2 -3.64103 | gap 1, opp_overlap 4728829 4728851 AATGCCGCGTTCACA TGGC-CAATGATGTT CCC AACATCATTGTGGCA TTTCCCATATCCCTA Shewana3_3935 4729150 - 4728836 - | hypothetical protein TERM 5727 4728918 - 4728906 - G 75 -10.5 -3.39844 | overlap 4728904 GTCAGATGTGAAAGA GCGGC CAT GCCGC CAACGGTCACTGGTG TERM 5728 4729420 - 4729451 + H 100 -16.8 -2.80821 | opp_overlap 4729418 4729430, overlap 4729417 4729430 ATTTTAGTTAATAGG TTTGGAAAAACGCG CATG CGCGTTTTTCCAGA TGGTGTATTTGGCAG TERM 5729 4729441 - 4729430 - H 78 -7.2 -4.57837 | opp_overlap 4729420 4729417 4729430, overlap 4729418 ATAGGTTTGGAAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 5730 4729430 - 4729441 + H 81 -7.2 -4.60487 | opp_overlap 4729430 4729418, overlap 4729420 4729417 ATAGGTTTGGAAAAA CGCG CATG CGCG TTTTTCCAGATGGTG Shewana3_3936 4729582 - 4731465 + | hypothetical protein TERM 5731 4731469 - 4731442 - T 100 -10.7 -4.27474 | gap 1, opp_overlap 4731458 4731460, overlap 4731458 AAAGCGATTAACAAA GCATTGCAGCGG ACAAG CCGCTG-AATGC GGCGTTATGTGTAAT Shewana3_3937 4732673 - 4732119 - | hypothetical protein Shewana3_3938 4732900 - 4734945 + | peptidase S9 prolyl oligopeptidase TERM 5732 4734998 - 4734970 - T 100 -13.3 -5.04597 | opp_overlap 4734975, overlap 4734975 ACTCACAGATAAAAA CAAAAGGTCTGCA CTA TGCAGACCTTTTT ATTGGGCGAAATACA TERM 5733 4734975 - 4734993 + T 100 -13.2 -5.06414 | opp_overlap 4734975 4734970 CAGATAAAAACAAAA GGTCTGCA CTA TGCAGACC TTTTTATTGGGCGAA TERM 5734 4734993 - 4734975 - T 100 -13.2 -5.38839 | opp_overlap 4734975, overlap 4734970 CAGATAAAAACAAAA GGTCTGCA CTA TGCAGACC TTTTTATTGGGCGAA Shewana3_3939 4736490 - 4735027 - | DNA-directed RNA polymerase Shewana3_3940 4737818 - 4736487 - | peptidase M16 domain-containing protein TERM 5735 4737873 - 4737901 + r 80 -3.8 -5.26316 | gap 1, opp_overlap 4737873 4737877, overlap 4737876 AAATTGCCTAGCAAA TCAAGCGCGGGAA GGCC TTCCCACGCC-GA TTTTTTGTAAGCTCA TERM 5736 4737901 - 4737873 - R 73 -8.2 -3.73968 | gap 1, opp_overlap 4737873 4737876, overlap 4737877 AAATTGCCTAGCAAA TCAAGCGCGGGAA GGCC TTCCCACGCC-GA TTTTTTGTAAGCTCA TERM 5737 4737898 - 4737877 - R 100 -12.3 -3.56704 | opp_overlap 4737876 4737873, overlap 4737873 TGCCTAGCAAATCAA GCGCGGGAA GGCC TTCCCACGC CGATTTTTTGTAAGC Shewana3_3941 4739368 - 4737956 - | carboxypeptidase TERM 5738 4739613 - 4739645 + H 71 -9.9 -2.59154 | opp_overlap 4739613 4739618 4739619, overlap 4739612 4739617 4739618 TTTTCACACACCATA CAAAACCTGCGACAG CTT TTGTCGCAGCCTTTG ATTAATATACTGTTA TERM 5739 4739645 - 4739613 - H 81 -11.4 -2.88999 | opp_overlap 4739613 4739612 4739617 4739618, overlap 4739618 4739619 TTTTCACACACCATA CAAAACCTGCGACA GCTTT TGTCGCAGCCTTTG ATTAATATACTGTTA TERM 5740 4739640 - 4739618 - H 86 -7.7 -4.60143 | opp_overlap 4739618 4739617 4739613 4739612, overlap 4739613 4739619 ACACACCATACAAAA CCTGCGACA GCTTT TGTCGCAGC CTTTGATTAATATAC TERM 5741 4739639 - 4739619 - H 81 -11.2 -3.35001 | opp_overlap 4739618 4739617 4739613 4739612, overlap 4739618 4739613 CACACCATACAAAAC CTGCGACA GCTTT TGTCGCAG CCTTTGATTAATATA Shewana3_3942 4739687 - 4740682 + | hypothetical protein TERM 5742 4740997 - 4740975 - g 78 -9.9 -3.91197 | gap 1 CCACAAACGACGAAA GGCTTAGGCG CAGG CGCC-AAGCC CGATGTCGGCTGCGC Shewana3_3943 4740699 - 4741901 + | cell division protein FtsZ Shewana3_3944 4742556 - 4741918 - | methyltransferase type 11 Shewana3_3945 4742968 - 4742615 - | hypothetical protein TERM 5743 4743577 - 4743557 - g 70 -11.2 -2.53382 | ACCATGTTGAATTTA GTTGGCTC CACCT GAGCCAAC AGGGTAAAGAACTCC TERM 5744 4743896 - 4743878 - g 71 -6.7 -4.16943 | TTTTAGAGGCCAAAA TCCTGCC GTCAG GGCAAGA AACCGATTGCCAAGC TERM 5745 4744081 - 4744065 - g 76 -5.1 -4.78107 | overlap 4744076 TATCAGCACCAAAAA GCTGC TCGAAAC GCAGC TCACTACCCGCGCCA Shewana3_3946 4743262 - 4745382 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Shewana3_3947 4746252 - 4745650 - | DTW domain-containing protein TERM 5746 4746345 - 4746313 - R 100 -11.5 -5.28778 | gap 1 ATTATGGATAAAAAA TGCCCGTAGC-TAT GGTCAA ATAAGCTACGGGCA AAGGGTGTTTCTTTG Shewana3_3948 4747588 - 4746380 - | Bcr/CflA subfamily drug resistance transporter Shewana3_3949 4747704 - 4748663 + | LysR family transcriptional regulator TERM 5747 4748707 - 4748682 - T 100 -15.5 -5.35222 | AAAAGCCATAAAAAA GCCCAGAGTAC AAAC GTACCCTGGGC CGATTCAACTCAACA Shewana3_3950 4750597 - 4748726 - | methyl-accepting chemotaxis sensory transducer TERM 5748 4749369 - 4749389 + g 74 -7.5 -4.14392 | overlap 4749371 CTACTCGCGGCCGAC TGCTGCGCC GCT GTCGCAGTA TTTTCCGCATTGGCA Shewana3_3951 4751031 - 4751366 + | hypothetical protein Shewana3_3952 4752826 - 4751369 - | Sel1 domain-containing protein Shewana3_3953 4753570 - 4752863 - | hypothetical protein TERM 5749 4753885 - 4753872 - g 73 -3.1 -4.92239 | gap 1, overlap 4753873 GCAAAAACGGAAAAA GTGGCC ACA GGC-AC AGCGACTCAAGCTAA TERM 5750 4754048 - 4754022 - g 73 -11.6 -3.00585 | overlap 4754019 GATTACACCAAATTA GCCGCCAGCATT CCG AATGCCGACAGC CTATTAGCTGCAGCG Shewana3_3954 4753761 - 4754288 + | hypothetical protein TERM 5751 4754296 - 4754326 + F 100 -17 -3.54424 | overlap 4754297 4754312 TGCTGTAATCCTCGC TTTCACCCTAAGCC CAT GGCTTAGGGTGAAC TTTAGCACCGTAAAC TERM 5752 4754297 - 4754325 + F 100 -20.5 -2.72511 | overlap 4754296 4754312 GCTGTAATCCTCGCT TTCACCCTAAGCC CAT GGCTTAGGGTGAA CTTTAGCACCGTAAA Shewana3_3955 4754385 - 4754846 + | hypothetical protein TERM 5753 4754891 - 4754864 - T 100 -11.4 -5.26316 | opp_overlap 4754864 GCACTCCATAAAAAA GCATGAATCGCA GTGT TGCCATTCATGC TTTTGAATCAAGGCT TERM 5754 4754864 - 4754891 + T 100 -11.4 -4.18197 | opp_overlap 4754864 GCACTCCATAAAAAA GCATGAATCGCA GTGT TGCCATTCATGC TTTTGAATCAAGGCT Shewana3_3956 4755760 - 4754936 - | putative signal transduction protein Shewana3_3957 4756056 - 4756667 + | TonB family protein TERM 5755 4756708 - 4756673 - T 74 -9.8 -3.20878 | gap 1, opp_overlap 4756675 4756677 4756685, overlap 4756675 GAAGATTTAAGGCAA GAGACCAGAACGCGCTA TGG TTG-GCGTTCTGGTCTG TCATTCAGTGATAGT TERM 5756 4756706 - 4756675 - T 93 -12.4 -3.16117 | gap 1, opp_overlap 4756675 4756677 4756685, overlap 4756673 AGATTTAAGGCAAGA GACCAGAACGCGCTA TGG TTG-GCGTTCTGGTC TGTCATTCAGTGATA TERM 5757 4756675 - 4756706 + T 93 -12.4 -2.92668 | gap 1, opp_overlap 4756675 4756673, overlap 4756677 4756685 AGATTTAAGGCAAGA GACCAGAACGCGCTA TGG TTG-GCGTTCTGGTC TGTCATTCAGTGATA TERM 5758 4756677 - 4756704 + T 71 -9.2 -3.0127 | gap 1, opp_overlap 4756675 4756673, overlap 4756675 4756685 ATTTAAGGCAAGAGA CCAGAACGCGCTA TGG TTG-GCGTTCTGG TCTGTCATTCAGTGA Shewana3_3958 4758007 - 4756739 - | inner membrane protein YjeH TERM 5759 4757071 - 4757087 + g 73 -2.9 -5.00616 | overlap 4757073 CCGCCAAGGCACGGA TTGGCAC ACC GTGACGA TTTTTTACCGCAAAG TERM 5760 4757954 - 4757930 - G 79 -8.5 -4.30719 | TTGCGGGAGAATAAA CACCCCTGTGC CCA GCAAAGTGGTG GCCATCAAGCCTGCG TERM 5761 4758192 - 4758202 + G 76 -4.6 -5.00884 | overlap 4758187 GCCTGCCTTGGCGAT GTGC CTC GCGC TTTTTTACAACCCGT Shewana3_3959 4758190 - 4758666 + | AsnC family transcriptional regulator TERM 5762 4758718 - 4758692 - T 100 -10.9 -4.56978 | opp_overlap 4758714, overlap 4758713 4758714 CCCCCAAACAAGAAA CGCCACCCCTA AGGAA TAAAGGTGGCG AGGCCCTTGTGGAGG Shewana3_3960 4759878 - 4758937 - | polysulphide reductase, NrfD Shewana3_3961 4760561 - 4759875 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewana3_3962 4761030 - 4760566 - | formate-dependent nitrite reductase TERM 5763 4760799 - 4760811 + g 76 -2.7 -5.06451 | TTAATCCAAAAACCA CTAAA TCA TTTGG TTTTTTAGGGTGATC TERM 5764 4761099 - 4761071 - R 100 -14 -3.40082 | gap 1, overlap 4761075 GGAAATACAGAGGAA GTCAGGGTTCGGA AGGC TCCGAACCC-GAC AGTCGTGGTCAGACG TERM 5765 4761096 - 4761075 - R 100 -14.5 -2.59954 | overlap 4761071 ATACAGAGGAAGTCA GGGTTCGGA AGGC TCCGAACCC GACAGTCGTGGTCAG Shewana3_3963 4761581 - 4761108 - | hypothetical protein TERM 5766 4761422 - 4761405 - G 78 -4.1 -5.09895 | overlap 4761407 GAGTGATTTAAAAAA GCTGAAG CTTT CTTCATC AAATAACACTGGTTT TERM 5767 4762193 - 4762207 + G 74 -7.2 -4.13591 | opp_overlap 4762193 CGGTTTATTTCCAAA TGAGTT TGT AACTCA TTTATATCCTATTGC Shewana3_3964 4761996 - 4762964 + | LysR family transcriptional regulator Shewana3_3965 4763139 - 4764860 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase TERM 5768 4765474 - 4765488 + G 83 -2.8 -5.52384 | TGTACCTGAAAGCCT TGGC TATGAAT GCCA TTTTTTTGCTGGCAG Shewana3_3966 4764860 - 4765663 + | alpha/beta hydrolase fold TERM 5769 4766243 - 4766267 + G 80 -10.7 -3.75153 | GAGGCCCGATCTCAA GCTGCGCTTAG ATG CTAATCGCGGC TTTAGCTTAGAACAG Shewana3_3967 4765686 - 4766735 + | O-succinylbenzoate synthase TERM 5770 4766765 - 4766737 - f 76 -11.1 -2.53715 | opp_overlap 4766760, overlap 4766736 4766760 CGCAGCAGGATTAAT CGCCAATGTCCGA ATC TCAAACATTGGCA CCATCCCAATCCATT TERM 5771 4767799 - 4767783 - g 70 -4.4 -4.67011 | gap 1, opp_overlap 4767784 4767793, overlap 4767771 4767784 4767786 AAGGGGATCGAAAAA CCACTCG ATGC CGAG-GG TTGGTTTTATACCAA Shewana3_3968 4766742 - 4768205 + | O-succinylbenzoate-CoA ligase TERM 5772 4768213 - 4768246 + T 100 -14.1 -3.28712 | opp_overlap 4768223, overlap 4768223 CCTGTTGATTTCAGC CACAAAAAAACCTGC CGTA GCAGGTTTTTTTATG TTCTCACGCCGAGCC TERM 5773 4768223 - 4768236 + T 100 -8.1 -5.84432 | opp_overlap 4768223, overlap 4768213 TCAGCCACAAAAAAA CCTGC CGTA GCAGG TTTTTTTATGTTCTC TERM 5774 4768236 - 4768223 - T 100 -8.1 -5.64274 | opp_overlap 4768223 4768213 TCAGCCACAAAAAAA CCTGC CGTA GCAGG TTTTTTTATGTTCTC Shewana3_3969 4769122 - 4768265 - | RNA polymerase factor sigma-32 Shewana3_3970 4770318 - 4769353 - | cell division protein FtsX TERM 5775 4769894 - 4769908 + g 76 -5.6 -4.84359 | opp_overlap 4769895, overlap 4769895 GGCGTTACGGTAATG ACCGCT GGC AGCGGG TTTTTATCGAGATAG TERM 5776 4769895 - 4769907 + g 70 -9.1 -3.50133 | opp_overlap 4769895, overlap 4769894 GCGTTACGGTAATGA CCGCT GGC AGCGG GTTTTTATCGAGATA TERM 5777 4770280 - 4770259 - G 80 -2.2 -5.52023 | overlap 4770269 ATGACGAATAAAAAA CATCACGA TACGCC CCGAGATG GGCAACTTGCTGCGC Shewana3_3971 4771016 - 4770315 - | cell division ATP-binding protein FtsE Shewana3_3972 4772708 - 4771020 - | signal recognition particle-docking protein FtsY TERM 5778 4772537 - 4772555 + g 73 -5.8 -4.56597 | overlap 4772543 CTAATTTGTCGGCTA GCGCCTGC TCG GCTGCCGC TTTTTCAGCCGCGAG TERM 5779 4772993 - 4772982 - g 79 -7.2 -4.45068 | ACGGCCAATAAGAAA GCCG GTAG CGGC CAAGTGCGGATCATT TERM 5780 4773553 - 4773537 - g 72 -10.1 -3.40907 | TTATACCAATACCAA GCCGAAG ACT CTCCGGC TAACACCGAGGAATA Shewana3_3973 4772922 - 4773569 + | putative methyltransferase TERM 5781 4773769 - 4773747 - g 70 -4.8 -4.66609 | TATGCTATTTAAAAA CTTGCTGACA CTA CGCAAGCAAG ATTATCTGCAAGTGT Shewana3_3974 4773571 - 4773843 + | hypothetical protein Shewana3_3975 4774813 - 4773800 - | transcriptional regulator TERM 5782 4775092 - 4775104 + G 73 -3.3 -5.00616 | opp_overlap 4775088 CGCCGATACGACTCA GGGTG AGG TGCCC TTTTTTAACCCAAAC Shewana3_3976 4774898 - 4775434 + | isochorismatase hydrolase TERM 5783 4775445 - 4775472 + T 90 -11.4 -3.7108 | opp_overlap 4775451, overlap 4775451 TATAAGGCCAGATAG CAAAAAGCCCTC TTTC GAGGGCTTTTTA TTTGAATATCACGCT TERM 5784 4775451 - 4775466 + T 100 -10.4 -5.31519 | opp_overlap 4775451, overlap 4775445 GCCAGATAGCAAAAA GCCCTC TTTC GAGGGC TTTTTATTTGAATAT TERM 5785 4775466 - 4775451 - T 100 -10.4 -4.84527 | opp_overlap 4775451 4775445 GCCAGATAGCAAAAA GCCCTC TTTC GAGGGC TTTTTATTTGAATAT Shewana3_3977 4776067 - 4775504 - | NapC/NirT cytochrome c domain-containing protein TERM 5786 4776098 - 4776114 + H 77 -4.5 -5.06052 | opp_overlap 4776098, overlap 4776105 AAATATTGTCAAAAT TAGTTTT TAT AAGACTA TTTTATATTTTTTCA TERM 5787 4776105 - 4776121 + H 82 -3.1 -5.46129 | opp_overlap 4776098, overlap 4776098 GTCAAAATTAGTTTT TATAAGA CTA TTTTATA TTTTTTCATTTATTA Shewana3_3978 4776500 - 4776877 + | hypothetical protein Shewana3_3979 4776973 - 4777431 + | hypothetical protein Shewana3_3980 4777503 - 4777979 + | hypothetical protein Shewana3_3981 4778160 - 4778462 + | copper-transporting ATPase domain-containing protein Shewana3_3982 4778484 - 4779986 + | RND family efflux transporter MFP subunit TERM 5788 4780947 - 4780936 - g 76 -5.8 -4.74706 | TCGAAGAGTTAAAAA CTGG TCTG CCAG ACGGCGTGGAAATCA TERM 5789 4781453 - 4781465 + G 76 -4.7 -5.03994 | overlap 4781452 4781454 CAAAACCTTTGCCAT GGCGG CGG CCGCA TTTTTATCTATCACC TERM 5790 4782142 - 4782129 - g 72 -8.1 -3.88498 | GTGCCACACACTAAA TCGGC CTAC GCCGA ACGCAGTGGTGGCGG TERM 5791 4783045 - 4783024 - g 91 -6.5 -5.09225 | gap 1, opp_overlap 4783024, overlap 4783025 ATGTGATGCAAAAAA TCGCCGCACC TAT GGT-CGGCGG TATGGTCACAGCACC TERM 5792 4783044 - 4783025 - g 74 -10 -3.64812 | gap 1, opp_overlap 4783024, overlap 4783024 TGTGATGCAAAAAAT CGCCGCACC TAT GGT-CGGCG GTATGGTCACAGCAC Shewana3_3983 4779996 - 4783133 + | CzcA family heavy metal efflux protein TERM 5793 4783151 - 4783187 + F 100 -24 -4.81851 | opp_overlap 4783151 4783157 CTTTGCTTTAATTCA GCATAACCCCTAGCGT GATTA ACGCTAGGGGTTATGC TTTTTGAATTTGAAT TERM 5794 4783187 - 4783151 - f 100 -24 -2.52464 | opp_overlap 4783151, overlap 4783157 CTTTGCTTTAATTCA GCATAACCCCTAGCGT GATTA ACGCTAGGGGTTATGC TTTTTGAATTTGAAT TERM 5795 4783181 - 4783157 - f 100 -15.8 -3.44319 | opp_overlap 4783151, overlap 4783151 TTTAATTCAGCATAA CCCCTAGCGT GATTA ACGCTAGGGG TTATGCTTTTTGAAT TERM 5796 4783506 - 4783490 - g 73 -3 -4.94811 | CTAAAAATAAACAAA CCAATC CCGAT AATTGG CAGAGCAATATTGGC Shewana3_3984 4783312 - 4784469 + | ribonuclease T2 TERM 5797 4784476 - 4784510 + F 86 -12.2 -3.01712 | gap 1, opp_overlap 4784466 4784471, overlap 4784478 CCAAACTAACCGCAT AC-GGCCAGTGGCGA GGTATA TCGCCACTGGCCTGC TCTTACAAACCAAGG TERM 5798 4784478 - 4784507 + F 100 -19.4 -2.73875 | opp_overlap 4784466 4784471, overlap 4784476 AAACTAACCGCATAC GGCCAGTGGCGA GGTATA TCGCCACTGGCC TGCTCTTACAAACCA TERM 5799 4785716 - 4785704 - g 75 -9.1 -3.90112 | CGCTGCTGAATGAAA TCGCC GAT GGCGA GGCCGATCTCACCCA Shewana3_3985 4784692 - 4786653 + | methyl-accepting chemotaxis sensory transducer TERM 5800 4786733 - 4786697 - T 73 -9.7 -2.96183 | opp_overlap 4786694 4786702, overlap 4786702 CGACATAAGACCATA TAAAACCTAGGTATA ACCTCAA TAAACCTAGGTTTTA TGATCGCTTATGCCG TERM 5801 4786702 - 4786728 + T 70 -5.2 -4.48741 | opp_overlap 4786702 4786697, overlap 4786694 TAAGACCATATAAAA CCTAGGTATA ACCTCAA TAAACCTAGG TTTTATGATCGCTTA TERM 5802 4786728 - 4786702 - T 73 -5.2 -4.61147 | opp_overlap 4786694 4786702, overlap 4786697 TAAGACCATATAAAA CCTAGGTATA ACCTCAA TAAACCTAGG TTTTATGATCGCTTA Shewana3_3986 4787543 - 4786767 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 5803 4787095 - 4787080 - G 76 -6.1 -4.62336 | ACTTGAGTGTAAAAA CTGGC TTCGGC GCCAG GTTCACGACAGGCCA TERM 5804 4787655 - 4787639 - R 100 -12.3 -5.4659 | opp_overlap 4787639 GAATATAAAGAAAAA GCCCTCA ATT TGAGGGC TTGATTCGGAGACGA TERM 5805 4787639 - 4787655 + r 95 -12.3 -3.33696 | opp_overlap 4787639 GAATATAAAGAAAAA GCCCTCA ATT TGAGGGC TTGATTCGGAGACGA Shewana3_3987 4788932 - 4787676 - | aromatic amino acid transporter Shewana3_3988 4791355 - 4788932 - | glycerol-3-phosphate acyltransferase TERM 5806 4790002 - 4790014 + g 83 -3.4 -5.45652 | CAAAGACTTGCCATA CAGA TTCTT TCTG TTTTTTCTTACCACT TERM 5807 4790318 - 4790301 - G 79 -6.9 -4.67607 | CGGCGAATAAAGAAA GCCCCGC CACG GCGGAAC AGCGGCCCCGCTGGC TERM 5808 4791057 - 4791045 - G 73 -6.3 -4.53707 | AACAAACGCATAAAA CATTC GAG GAATG GCTCATTGCTGGCAC Shewana3_3989 4791517 - 4792137 + | LexA repressor Shewana3_3990 4792134 - 4792646 + | hypothetical protein TERM 5809 4792680 - 4792701 + F 100 -6.5 -5.77853 | TTAGCCTTGAAAGCC GCCTCACCT GTGA ATGTGGGGC TTTTTTTTGGCAATT TERM 5810 4793849 - 4793815 - g 73 -5.5 -4.72127 | opp_overlap 4793836, overlap 4793817 GAAGAACAAAAACAA GCCGCCAATGCCGCC GCGCA AGCCGCACAGGCCGC GTTATCGCAAACATT TERM 5811 4794256 - 4794236 - g 74 -7.5 -4.19817 | overlap 4794237 CCGATGCACCCAAAA CGGCGACAG AAC CTACCGCCA GCGTCGATCCCGCGA Shewana3_3991 4793053 - 4794594 + | cytochrome c oxidase, subunit II TERM 5812 4795535 - 4795563 + G 80 -2.4 -5.39721 | gap 1 CGCACCATATGTTCA CAAC-CGGTATGC CTGT GTTTGCCGAGTTG TTTTTTATGTACTGC Shewana3_3992 4794604 - 4796196 + | cytochrome c oxidase, subunit I Shewana3_3993 4796198 - 4796779 + | cytochrome C oxidase assembly protein TERM 5813 4796823 - 4796844 + G 76 -6.5 -4.53777 | overlap 4796807 CGCCCAGAGTGCTTG GCCGATTGT TGGT GCTATCGGC TTGTTTTTAATTGCC Shewana3_3994 4796776 - 4797651 + | cytochrome c oxidase, subunit III TERM 5814 4797909 - 4797895 - g 74 -4.3 -4.75356 | AAACACACTTAAAAA TGAAC GGGAT GTTCA TACGCTATCCTTATG Shewana3_3995 4797855 - 4798766 + | hypothetical protein Shewana3_3996 4798834 - 4799379 + | hypothetical protein Shewana3_3997 4799379 - 4800437 + | cytochrome oxidase assembly TERM 5815 4800772 - 4800786 + G 73 -6.4 -4.49981 | overlap 4800766 GTTGTTCGCGGCACT CTTAGG CTG CCTAGG TTTTGTGATCCTCTA Shewana3_3998 4800455 - 4801357 + | protoheme IX farnesyltransferase Shewana3_3999 4801382 - 4802041 + | electron transport protein SCO1/SenC Shewana3_4000 4803099 - 4802053 - | polysaccharide deacetylase TERM 5816 4804082 - 4804064 - g 72 -3.8 -4.87665 | overlap 4804076 GCCTACGGACAAAAA CGCACA CAACCAC TGCGCG AAGCAGTACTCCTGG Shewana3_4001 4803122 - 4804489 + | MATE efflux family protein TERM 5817 4804967 - 4804946 - T 100 -10.1 -4.64598 | overlap 4804937 TAACCACGCGAAAAA CCACGAGCG TGCT CGCCCGTAG CGTCATCGACCGACT TERM 5818 4806543 - 4806526 - T 100 -8.4 -5.67967 | opp_overlap 4806526 AGTACCATAAAAAAA CGCGAC TCATTG GTCGCG TTTTTTATTAAGTTC TERM 5819 4806526 - 4806543 + T 100 -9.1 -5.5074 | opp_overlap 4806526 AGTACCATAAAAAAA CGCGACT CATT GGTCGCG TTTTTTATTAAGTTC Shewana3_4003 4807146 - 4806568 - | putative DNA uptake protein TERM 5820 4807335 - 4807350 + r 70 -6 -4.4078 | opp_overlap 4807335 TTTAAAAGCAAAAAA GCGACC GAAA GGCCGC TTTTACTTGGGACAA TERM 5821 4807350 - 4807335 - R 100 -8.2 -5.46698 | opp_overlap 4807335 TTTAAAAGCAAAAAA GCGACC GAAA GGCCGC TTTTACTTGGGACAA Shewana3_4004 4809122 - 4807374 - | flavocytochrome c Shewana3_4005 4809976 - 4809212 - | hypothetical protein Shewana3_4006 4811405 - 4810164 - | histidine kinase A domain-containing protein TERM 5822 4810911 - 4810899 - G 73 -6.3 -4.52589 | GCTCTGCATATAAAA TGCAA GGC TTGCA CTTGCACAAAAGGTT Shewana3_4007 4812069 - 4811392 - | two component transcriptional regulator Shewana3_4008 4812818 - 4812072 - | LuxR family transcriptional regulator TERM 5823 4812597 - 4812580 - G 84 -4.8 -5.30616 | TGATTTAAATAAAAA CGCTGC AATTGA GCAACG ATGGGTGAAGAAGCT Shewana3_4009 4813775 - 4812987 - | competence protein ComF Shewana3_4010 4813801 - 4814595 + | bioH protein Shewana3_4011 4814657 - 4815211 + | hypothetical protein TERM 5824 4815236 - 4815277 + T 100 -12.5 -3.90744 | opp_overlap 4815242 4815248, overlap 4815237 4815241 4815248 GTTTAAAGACAAGTT TCAAAATAAAAATGCCGCT AATC AGCGGCATTTTTAATTCGG TTATTTACCCGAGCG TERM 5825 4815237 - 4815276 + T 100 -13.8 -2.94232 | opp_overlap 4815242 4815248, overlap 4815236 4815241 4815248 TTTAAAGACAAGTTT CAAAATAAAAATGCCGCT AATC AGCGGCATTTTTAATTCG GTTATTTACCCGAGC TERM 5826 4815241 - 4815272 + T 100 -13.2 -3.33509 | opp_overlap 4815242 4815248, overlap 4815237 4815236 4815248 AAGACAAGTTTCAAA ATAAAAATGCCGCT AATC AGCGGCATTTTTAA TTCGGTTATTTACCC TERM 5827 4815271 - 4815242 - T 100 -16.7 -4.16251 | opp_overlap 4815241 4815237 4815236 4815248, overlap 4815248 AGACAAGTTTCAAAA TAAAAATGCCGCT AATC AGCGGCATTTTTA ATTCGGTTATTTACC TERM 5828 4815248 - 4815265 + T 100 -11.3 -4.90013 | opp_overlap 4815242 4815248, overlap 4815241 4815237 4815236 GTTTCAAAATAAAAA TGCCGCT AATC AGCGGCA TTTTTAATTCGGTTA TERM 5829 4815265 - 4815248 - T 100 -11.3 -5.45802 | opp_overlap 4815248 4815241 4815237 4815236, overlap 4815242 GTTTCAAAATAAAAA TGCCGCT AATC AGCGGCA TTTTTAATTCGGTTA Shewana3_4012 4817242 - 4815278 - | sulfatase TERM 5830 4815329 - 4815344 + g 70 -3.2 -4.82901 | opp_overlap 4815341, overlap 4815341 TAGGCTGCCCCACAG GGCC CAACCTAA GGCC TTTTTCTCCAGCGCC TERM 5831 4815341 - 4815381 + g 71 -10.3 -3.10343 | opp_overlap 4815341, overlap 4815329 CAGGGCCCAACCTAA GGCCTTTTTCTCCAGCGCC TGC GCCGCTGGGGCATAAGGCG TTAAGTGCTCAGTCT TERM 5832 4815451 - 4815473 + g 73 -2.7 -4.98436 | GCAGGATAACCACAT CTTTACCTT CCATC AGGGCAAAG TTTTTATCGTATTGC TERM 5833 4817451 - 4817416 - R 100 -9 -5.71638 | opp_overlap 4817446, overlap 4817417 TAACAAGTAAAAAAA TGTCGGCTCGCACACA AGTG TATATTCGAGCCGACC TAGTCAGATTACTTT TERM 5834 4817450 - 4817417 - R 100 -12.5 -4.00543 | opp_overlap 4817446, overlap 4817416 AACAAGTAAAAAAAT GTCGGCTCGCACACA AGTG TATATTCGAGCCGAC CTAGTCAGATTACTT Shewana3_4013 4819799 - 4817460 - | RNA-binding S1 domain-containing protein Shewana3_4014 4820432 - 4819929 - | transcription elongation factor GreB Shewana3_4015 4821438 - 4820491 - | response regulator receiver modulated diguanylate cyclase Shewana3_4016 4826318 - 4821438 - | putative PAS/PAC sensor protein TERM 5835 4826022 - 4826008 - G 73 -5.6 -4.73108 | CTGATAAAACCAAAA CCCCGA GCA CCAGGG AACTCCTCATCCACA TERM 5836 4827170 - 4827184 + G 77 -10 -3.66803 | AATGAGGCCATCGCC CTCACC AGT GGTGAG TTTGCGGTATTAAAA ompR 4826687 - 4827412 + | osmolarity response regulator envZ 4827452 - 4828768 + | osmolarity sensor protein Shewana3_4019 4828885 - 4830861 + | methyl-accepting chemotaxis sensory transducer TERM 5837 4830903 - 4830874 - T 95 -12.3 -3.28708 | opp_overlap 4830880, overlap 4830880 TAAACTTGATACCAA TAAAAATGGGAGC CTAG GCTCCCATTTTTT TCTAATCAGGCATTA TERM 5838 4830897 - 4830880 - T 100 -11.3 -5.16841 | opp_overlap 4830880, overlap 4830874 TGATACCAATAAAAA TGGGAGC CTAG GCTCCCA TTTTTTTCTAATCAG TERM 5839 4830880 - 4830897 + T 100 -11.3 -5.67063 | opp_overlap 4830880 4830874 TGATACCAATAAAAA TGGGAGC CTAG GCTCCCA TTTTTTTCTAATCAG Shewana3_4020 4831389 - 4830916 - | redoxin domain-containing protein Shewana3_4021 4831938 - 4831588 - | hypothetical protein TERM 5840 4832040 - 4832060 + r 71 -4.7 -4.67353 | overlap 4832041 TGCCGATGTCATTAT TGAAATTCC CAC GGGATTTCC TTTTTGAATAGATCA Shewana3_4022 4832266 - 4832036 - | hypothetical protein TERM 5841 4833266 - 4833289 + r 78 -5.2 -5.01811 | opp_overlap 4833266 TTTCGACGTAAAAAA GCAGCGCATC GATA GATACACTGC TTTTTAATTTAGTCG TERM 5842 4833289 - 4833266 - R 100 -9.6 -5.08824 | opp_overlap 4833266 TTTCGACGTAAAAAA GCAGCGCATC GATA GATACACTGC TTTTTAATTTAGTCG Shewana3_4023 4834289 - 4833345 - | hypothetical protein Shewana3_4024 4834657 - 4834959 + | peptidase Shewana3_4025 4834961 - 4835644 + | two component transcriptional regulator TERM 5843 4835696 - 4835708 + G 76 -5.5 -4.77698 | overlap 4835685 AACTCGGCTCGTCCT CAGCG CGC TGCTG TTTATTTTGGTATTA Shewana3_4026 4835637 - 4837001 + | ATPase domain-containing protein Shewana3_4027 4837151 - 4838656 + | hypothetical protein TERM 5844 4838673 - 4838692 + T 100 -13.6 -5.47159 | opp_overlap 4838673 CTTTACCAATAAAAA GAGCGCGA ATAT TCGCGCTC TTTTTTATGTTCAAC TERM 5845 4838692 - 4838673 - T 100 -13.6 -5.1356 | opp_overlap 4838673 CTTTACCAATAAAAA GAGCGCGA ATAT TCGCGCTC TTTTTTATGTTCAAC Shewana3_4028 4839187 - 4838711 - | hypothetical protein TERM 5846 4838877 - 4838867 - G 73 -3.2 -4.91459 | TAACAGGTATAAAAA CCCA GCA TAGG TCGGTGTATCGGCGG Shewana3_4029 4842950 - 4839264 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) TERM 5847 4840328 - 4840341 + g 74 -3.9 -5.00616 | GCGCGACGATATCGT CATTA CCCA TAATG TTTTTTAAGCGCCGC TERM 5848 4840376 - 4840410 + g 73 -5 -4.63527 | opp_overlap 4840374 4840376 4840379 CTTCGAGCAACAACA TATCACCGACATGGTG GCC CAAGGTGTCGTTGATA TTTTTGAAATGATCC TERM 5849 4842839 - 4842813 - G 84 -11 -3.8186 | TAGGGCAATCAACAA GCCTATTTTGCC AAC GACAAAATAAGC CAAGGCAACGAGGAT Shewana3_4030 4843538 - 4843858 + | hypothetical protein Shewana3_4031 4844048 - 4845076 + | ubiquinol oxidase, subunit II TERM 5850 4846675 - 4846662 - g 76 -8.1 -4.26076 | overlap 4846673 TGACCGCGACCAAAA CCGTG ACAC CACGG GCGACCCATGGAATG Shewana3_4032 4845079 - 4847058 + | cytochrome c oxidase, subunit I TERM 5851 4847119 - 4847148 + G 70 -4.4 -4.71061 | gap 2, opp_overlap 4847127, overlap 4847125 4847128 GGAGCACCACGAGCA CCATGACACGGGTG GCAA CACCC-TGTT-TGG TTTTTGGCTCTACCT TERM 5852 4847128 - 4847141 + G 70 -8.1 -3.7557 | opp_overlap 4847127, overlap 4847125 4847119 CGAGCACCATGACAC GGGTG GCAA CACCC TGTTTGGTTTTTGGC Shewana3_4033 4847060 - 4847680 + | cytochrome c oxidase, subunit III Shewana3_4034 4847680 - 4848021 + | cytochrome C oxidase subunit IV TERM 5853 4848290 - 4848276 - g 76 -5.7 -4.67755 | ATATTGACGCAAAAA TGCAG CGCAC CTGCA AACGCGTCACCGTCA TERM 5854 4848858 - 4848873 + G 76 -5.4 -4.8143 | ATATGCCACGTTGGG CCAGAC AAGT GTTTGG TTTTTCAATTATTAC Shewana3_4035 4848035 - 4848967 + | protoheme IX farnesyltransferase TERM 5855 4849017 - 4848988 - f 100 -12.3 -4.66163 | opp_overlap 4848993, overlap 4848974 4848993 ACCTTTATTCAAAAA CAAAAGCGCTAAC CTAG GTTAGCGCTTTTT ATTGCCGTATGACTA TERM 5856 4848993 - 4849012 + F 100 -12.2 -5.09204 | opp_overlap 4848988 4848993 TATTCAAAAACAAAA GCGCTAAC CTAG GTTAGCGC TTTTTATTGCCGTAT TERM 5857 4849012 - 4848993 - f 100 -12.2 -5.2853 | opp_overlap 4848993, overlap 4848988 TATTCAAAAACAAAA GCGCTAAC CTAG GTTAGCGC TTTTTATTGCCGTAT Shewana3_4036 4849150 - 4850955 + | amidohydrolase 3 TERM 5858 4850970 - 4851000 + T 100 -12.8 -4.77173 | opp_overlap 4850970 AACTTGGCGGTAAAA TGTCGATAGAAG ACTTGCG CTTCTATCGACA TTTCTTTTATACGCC TERM 5859 4851000 - 4850970 - T 100 -12.8 -4.08064 | opp_overlap 4850970 AACTTGGCGGTAAAA TGTCGATAGAAG ACTTGCG CTTCTATCGACA TTTCTTTTATACGCC Shewana3_4037 4851829 - 4851044 - | hypothetical protein Shewana3_4038 4851980 - 4852825 + | hypothetical protein TERM 5860 4852886 - 4852861 - T 89 -12.7 -2.80935 | gap 1, opp_overlap 4852861 ATCGCATGTAGCAGA GCAGCGTCACCT CCT AGGT-ACGCTGC TTTTGTTTTTTAAGC TERM 5861 4852861 - 4852886 + T 100 -12.7 -5.42198 | gap 1, opp_overlap 4852861 ATCGCATGTAGCAGA GCAGCGTCACCT CCT AGGT-ACGCTGC TTTTGTTTTTTAAGC Shewana3_4039 4853699 - 4852980 - | lytic transglycosylase, catalytic Shewana3_4040 4854727 - 4853699 - | hypothetical protein TERM 5862 4854769 - 4854738 - R 79 -10.9 -3.09878 | TTCATTCAGTTAATA TGTTTGCGGAGCC TATCTT GGCCCCGCAAATA TCGAAGGATTACAGA Shewana3_4041 4855344 - 4854778 - | LemA family protein TERM 5863 4855177 - 4855187 + g 71 -6.8 -4.14472 | opp_overlap 4855177 TTCATGATCCATAAA TCGC TTG GCGA TTTTGAGGATATTGG TERM 5864 4855572 - 4855590 + H 100 -8.9 -5.40072 | opp_overlap 4855571 TTTGCTCGTGAATAC TGGACTC CTAGT GAGTCCA TTTTTTTACCCCGCA TERM 5865 4857301 - 4857325 + G 70 -2.8 -4.88407 | AGGCACGCTTATCGC CACTATGCTG CCGTA CACCTTAGTG TTTTTCGTTGGCTGG Shewana3_4042 4855811 - 4857418 + | AbgT putative transporter TERM 5866 4857449 - 4857474 + T 100 -15.5 -4.93696 | gap 1, opp_overlap 4857449 CATCCCTAACCCAAA GGGCGTCGAAGC TAA GCT-CGACGCCC TTTTTGATGTTTGAA TERM 5867 4857474 - 4857449 - T 100 -15.5 -3.75629 | gap 1, opp_overlap 4857449 CATCCCTAACCCAAA GGGCGTCGAAGC TAA GCT-CGACGCCC TTTTTGATGTTTGAA Shewana3_4043 4857810 - 4857511 - | hypothetical protein Shewana3_4044 4858154 - 4857858 - | hypothetical protein TERM 5868 4857959 - 4857944 - G 70 -2.6 -5.00851 | gap 1, overlap 4857946 ACCAACCAAATAAAA TA-CCTG CCG CAGGATA AAGATAGAGTGCCCG TERM 5869 4858243 - 4858226 - R 100 -12.7 -5.17744 | opp_overlap 4858226 ATACACCAACAAAAA GCCCTGC ATGT GCAGGGC TTTAAGAGTGTTAGG TERM 5870 4858226 - 4858243 + r 100 -12.7 -3.6106 | opp_overlap 4858226 ATACACCAACAAAAA GCCCTGC ATGT GCAGGGC TTTAAGAGTGTTAGG TERM 5871 4858271 - 4858282 + r 89 -7.2 -5.011 | overlap 4858269 AGGTTAGATTACTCC GCCG AGGT CGGC TTTTCTTCTTTACCT Shewana3_4045 4861398 - 4858264 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein Shewana3_4046 4862556 - 4861408 - | RND family efflux transporter MFP subunit TERM 5872 4864096 - 4864080 - g 71 -7.3 -3.98661 | GACAGTGACCATAAA GTCTATG GCA CACAGAC TGAAATCTTCGATGA Shewana3_4047 4863399 - 4864145 + | hypothetical protein TERM 5873 4864217 - 4864239 + T 100 -12 -5.38047 | overlap 4864218 TGAAATATCGAGCCT TGACCAGCCA ATT TGGCTGGTCC TTTTTTATCTAAATA TERM 5874 4864218 - 4864238 + T 100 -15.5 -3.81744 | overlap 4864217 GAAATATCGAGCCTT GACCAGCCA ATT TGGCTGGTC CTTTTTTATCTAAAT Shewana3_4048 4864937 - 4864248 - | 3-methyladenine DNA glycosylase TERM 5875 4864481 - 4864496 + g 71 -6 -4.42806 | overlap 4864482 GTCCAGTATTGCCGC CGAGGC GAGC GCCGCG TTTCTTTAAGAGTGC TERM 5876 4865716 - 4865698 - g 74 -11.6 -3.04263 | opp_overlap 4865689 ACGCTACTGGCAACA GGCGCAGC TGC GCGGCGCC TGGATGCTGGTGCTT Shewana3_4049 4865141 - 4865788 + | glutathione S-transferase domain-containing protein Shewana3_4050 4866595 - 4866065 - | hypothetical protein TERM 5877 4866675 - 4866690 + r 100 -11.8 -4.91109 | opp_overlap 4866675 CTGGCTCACAAAAAA GGCGCC AAAT GGCGCC TTTTTATGCTCAAGC TERM 5878 4866690 - 4866675 - R 100 -11.8 -5.24129 | opp_overlap 4866675 CTGGCTCACAAAAAA GGCGCC AAAT GGCGCC TTTTTATGCTCAAGC Shewana3_4051 4868763 - 4866724 - | oligopeptidase A TERM 5879 4868895 - 4868882 - H 88 -3.1 -5.80003 | TCAACAAAGAAAAAA GCGAA CCAG TTCAC AATTAAGATTTACAC Shewana3_4052 4869032 - 4869820 + | hypothetical protein Shewana3_4053 4869914 - 4870429 + | hypothetical protein Shewana3_4054 4870597 - 4871952 + | glutathione reductase TERM 5880 4872012 - 4872036 + F 100 -7.8 -5.5208 | opp_overlap 4872012 TTACATTTTATCGAA GCGGTTCTGA TATTC TCAGCGCCGC TTTTTTATGTTCTAC Shewana3_4055 4872457 - 4873953 + | sodium/proline symporter TERM 5881 4874025 - 4873999 - g 77 -10.8 -3.53811 | CGTATCGTCGTCAAA GTGGGGAGCG CCTTAAT CGCGCCCCAC AAGCAAGGTTGCAGT TERM 5882 4874196 - 4874184 - g 79 -6.9 -4.59773 | overlap 4874186 TGTCACGGTCAAAAA GGCCA TGG CGGCC GCGGGTCAGGCGGAT Shewana3_4056 4873963 - 4875069 + | gamma-glutamyl kinase Shewana3_4057 4875081 - 4876328 + | glutamate-5-semialdehyde dehydrogenase TERM 5883 4876491 - 4876503 + T 71 -4.9 -4.74103 | AATTTCGGTGTATTT TTGTA GCT TACAA TTTTTACATTAACAC Shewana3_4058 4878098 - 4876578 - | KAP P-loop domain-containing protein Shewana3_4059 4879873 - 4878341 - | XRE family transcriptional regulator TERM 5884 4878527 - 4878547 + g 83 -9.6 -4.21194 | AATCGCGACTGAGCC GCCGCCAG AGACA CAGGCGGC TTTTAAATCATGGGC TERM 5885 4879040 - 4879022 - G 73 -3 -5.00616 | GGCTCCGGCAAAAAA GCTGGACT CAA AGTCGCGC CACGCATGCAAAATA TERM 5886 4879565 - 4879553 - G 83 -3.3 -5.46706 | ATTTGAAAACAAAAA GCTGG GTT CGAGC GCCATGCCGCTAATC TERM 5887 4879677 - 4879663 - G 76 -7.1 -4.56597 | CGTCCTTTTGAAAAA CCGTG GCAAT CACGG CCAACATTTCAGCAC TERM 5888 4879801 - 4879821 + g 78 -3.9 -5.1356 | overlap 4879809 CCATGGTTAAATTGT TACGTTTCC GTA GGTTACGTA TTTTTGTTCCTAGGA Shewana3_4060 4880082 - 4880645 + | malate synthase TERM 5889 4880664 - 4880688 + F 100 -12.1 -5.53288 | CCGCGTATTTTCACC GGAGAGTCGCC GTC GGCAGCTCTCC TTTTTTTAGCTTCAA Shewana3_4061 4880912 - 4881862 + | hypothetical protein Shewana3_4062 4882064 - 4881912 - | hypothetical protein Shewana3_4063 4882716 - 4882171 - | LuxR family transcriptional regulator TERM 5890 4882476 - 4882490 + g 100 -8.6 -5.61596 | CGGAACGCATTTGGG TCGACA TAT TGTCGA TTTTTTTATCGGCGT Shewana3_4064 4882861 - 4884063 + | hypothetical protein Shewana3_4065 4884060 - 4885088 + | hypothetical protein Shewana3_4066 4885090 - 4888143 + | CzcA family heavy metal efflux protein Shewana3_4067 4888140 - 4888445 + | hypothetical protein TERM 5891 4888453 - 4888478 + T 90 -11.2 -3.94746 | opp_overlap 4888453 TTTCCTAACGATAAA GGGCATACGG AACCTG CTGTATGCCC TTTGATTAACTATAG TERM 5892 4888478 - 4888453 - T 80 -9 -4.05446 | opp_overlap 4888453 TTTCCTAACGATAAA GGGCATACGG AACCTG CTGTATGCCC TTTGATTAACTATAG Shewana3_4068 4889123 - 4888488 - | hypothetical protein Shewana3_4069 4890415 - 4889225 - | metal dependent phosphohydrolase TERM 5893 4890610 - 4890598 - R 78 -4.1 -5.15634 | opp_overlap 4890598 GAGTTGATCAAAAAA CCAAC CAA ATTGG GAGGTTAATATTTCT Shewana3_4070 4892157 - 4890793 - | ABC transporter related TERM 5894 4891726 - 4891714 - G 73 -9.1 -3.75292 | ATCGAGCAGCAATAA GTGCG GCT CGCAC ACCAACTGAGCGGCG TERM 5895 4891977 - 4892011 + g 73 -9.3 -3.74872 | gap 1, opp_overlap 4891973 4891974, overlap 4891973 GACGCCAAATATCTC CCT-CATGCGGGCG ATTCTGTA CGCCCGCAAGCAGG TTTAATAGACTCGAT TERM 5896 4892567 - 4892554 - H 74 -4.5 -4.87665 | CGGTATCGACAAAAA GACCC ATAT AGGTC ACATTTTTTTGCACC Shewana3_4071 4892786 - 4894144 + | isochorismate synthases Shewana3_4072 4894884 - 4894159 - | hypothetical protein Shewana3_4073 4895133 - 4895786 + | hypothetical protein TERM 5897 4895832 - 4895866 + F 82 -7.9 -4.52589 | gap 1, overlap 4895864 TGAGCAGTTTTTAGT TCAGCCCC-ACTGTGT TTAT GCGCATTTGGGGCTGA TTTTCTGTGAGAGAA TERM 5898 4896199 - 4896181 - g 89 -10.2 -4.33153 | overlap 4896173 TGGAATACCAAGAAA CCTGGGCG AGC CGCCAAGG CTACAAGCTGATCCA TERM 5899 4896358 - 4896321 - g 71 -7.2 -3.97947 | gap 2, opp_overlap 4896321 4896322, overlap 4896322 CTGATCGACCATAAA CTGCATTTAAGCAAGTCG ATTG CGACT-GCTTAAAAGC-G ATTTACATAAAAATG Shewana3_4074 4895886 - 4896353 + | acetyltransferase TERM 5900 4896533 - 4896551 + T 100 -10.3 -6.11019 | ACACACTCTTTTGTG GCCGGAT TCATC ATCCGGC TTTTTTTTGCTTTTT Shewana3_4075 4898744 - 4896609 - | ATPase domain-containing protein TERM 5901 4896855 - 4896833 - G 72 -4 -4.77759 | overlap 4896823 4896835 AGAAGGGATCAAAAA TCCGCCCTAG TTG CTCAGGCGCA ATCCCCGAACCTTCG Shewana3_4076 4900127 - 4898745 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 5902 4899302 - 4899312 + g 79 -8.2 -4.371 | TCTCACTGCCGACGG GGCG AAT CGCC TTTTGCTCTAATACC TERM 5903 4900002 - 4900016 + g 76 -4.2 -5.00616 | AATACTGCCCGCCGT TTCGAC TAA GGCGAA TTTTTTCGAGAGCGC Shewana3_4077 4900412 - 4901236 + | extracellular solute-binding protein TERM 5904 4901260 - 4901280 + G 100 -12.6 -4.4078 | TGGTTAGCACTGTTA CAGCAGGC GTTAA GCCTGCTG TTTTCATTGGACCCC Shewana3_4078 4901233 - 4901940 + | binding-protein-dependent transport systems inner membrane component Shewana3_4079 4901944 - 4902651 + | ABC transporter related Shewana3_4080 4902635 - 4903228 + | molybdenum cofactor guanylyltransferase TERM 5905 4903875 - 4903858 - g 76 -5.5 -4.87665 | opp_overlap 4903865 4903866 GGGCAGCGATAAAAA CCTCAGC GTGA GCCAAGG CTTGGCGCAGATTTT Shewana3_4081 4903259 - 4905058 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 5906 4905221 - 4905239 + G 80 -10.3 -3.74693 | GCACCTCGAAGAGTT GGCTTGG ATTGC CCAAGCC TTTACTGAACTGGGG Shewana3_4082 4905075 - 4906058 + | molybdenum cofactor biosynthesis protein A TERM 5907 4906285 - 4906271 - g 77 -11.4 -3.41602 | GTTATTTGATGACAA TGCGCC GCT GGCGCA ATTGCAGCTAGATGG Shewana3_4083 4906140 - 4906595 + | hypothetical protein Shewana3_4084 4906620 - 4907435 + | formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase TERM 5908 4907443 - 4907476 + T 100 -15.5 -3.7104 | opp_overlap 4907451, overlap 4907451 CGCGTTAATCTCGCC GATAAAAATGCCTGC AATT GCAGGCATTTTTAGC TTCTTCGATATGGCT TERM 5909 4907468 - 4907451 - T 100 -11.3 -4.82901 | opp_overlap 4907443 4907451 TCTCGCCGATAAAAA TGCCTGC AATT GCAGGCA TTTTTAGCTTCTTCG TERM 5910 4907451 - 4907468 + T 100 -11.3 -4.8143 | opp_overlap 4907451, overlap 4907443 TCTCGCCGATAAAAA TGCCTGC AATT GCAGGCA TTTTTAGCTTCTTCG Shewana3_4085 4909221 - 4907497 - | glycosyl transferase family protein Shewana3_4086 4909894 - 4909235 - | hypothetical protein TERM 5911 4909877 - 4909862 - G 73 -5.4 -4.73614 | opp_overlap 4909862 CACCAGCAAAATAAA GACGAT AAAA ATCGCC TTATAGAGTCGCTTC TERM 5912 4909915 - 4909936 + r 83 -8.7 -4.11216 | TCGTGCCAGCTGGTT TCGCTACGG GCGA CCTTAGCGA TTTTCGCCCTACGAC Shewana3_4087 4910627 - 4909896 - | glycosyl transferase family protein TERM 5913 4910243 - 4910256 + g 70 -4.5 -4.62069 | overlap 4910223 GGAATCGCTTCCACG CCGTG TCTT TACGG TTTTTGCGATAACCG Shewana3_4088 4910795 - 4912024 + | phosphoglycerate mutase Shewana3_4089 4912049 - 4913056 + | NAD-dependent epimerase/dehydratase TERM 5914 4913075 - 4913098 + T 79 -8.1 -4.2528 | opp_overlap 4913077, overlap 4913077 CTCTGAGAAAACCAA AAGGCCTGC TGATTT GCAGGCCTC TTTATTGGATTAGCG TERM 5915 4913096 - 4913077 - T 100 -10.7 -4.73108 | opp_overlap 4913075 4913077 CTGAGAAAACCAAAA GGCCTGC TGATTT GCAGGCC TCTTTATTGGATTAG TERM 5916 4913077 - 4913096 + T 84 -10.7 -3.72494 | opp_overlap 4913077, overlap 4913075 CTGAGAAAACCAAAA GGCCTGC TGATTT GCAGGCC TCTTTATTGGATTAG Shewana3_4090 4914587 - 4913115 - | hypothetical protein TERM 5917 4913275 - 4913298 + g 79 -12.4 -3.19449 | overlap 4913276 4913277 4913278 TCTTCCTTCGGTGGC TGTGGCGCCC ATGT GGTCGCCACA TTGGTGCCGTCTTTA TERM 5918 4913276 - 4913309 + g 88 -10.3 -4.20918 | gap 1, overlap 4913275 4913277 4913278 CTTCCTTCGGTGGCT G-TGGCGCCCATGTGG TCG CCACATTGGTGCCGTC TTTATTCAACTTGGC TERM 5919 4913277 - 4913307 + g 93 -14 -3.70139 | overlap 4913275 4913276 4913278 TTCCTTCGGTGGCTG TGGCGCCCATGTGG TCG CCACATTGGTGCCG TCTTTATTCAACTTG TERM 5920 4913278 - 4913306 + g 84 -15.3 -2.8136 | overlap 4913275 4913277 4913276 TCCTTCGGTGGCTGT GGCGCCCATGTGG TCG CCACATTGGTGCC GTCTTTATTCAACTT coaD 4915145 - 4914654 - | phosphopantetheine adenylyltransferase Shewana3_4092 4915388 - 4915179 - | hypothetical protein TERM 5921 4915522 - 4915552 + G 87 -9.8 -4.36914 | overlap 4915524 AAGCCGGGCAAGATG TTCACCTCTTTGTG TTC CATAAAGAGGGGGA TTTTATGCCGCCAGA Shewana3_4093 4915422 - 4916492 + | glycosyl transferase, group 1 Shewana3_4094 4916524 - 4916904 + | capsule biosynthesis phosphatase TERM 5922 4917027 - 4917016 - g 91 -4.4 -5.5762 | ATCAAATACAAAAAA TTCC TAAG GGAA AGAGTATTTATCTTT TERM 5923 4917849 - 4917836 - g 72 -3.9 -4.77925 | AAAAAATGTTAAAAA TGAAA AATT TTTCA ATGAATTACTAACCG Shewana3_4095 4916895 - 4918460 + | hypothetical protein TERM 5924 4918594 - 4918572 - g 74 -4.3 -4.75372 | gap 1, overlap 4918573 4918574 AGCACTCAGTAAAAA GC-TTTGAAA AATA TTTCAAAAGC GAAGAGTTTATTTTT Shewana3_4096 4918457 - 4919185 + | hypothetical protein TERM 5925 4919185 - 4919232 + T 90 -5.9 -5.57054 | gap 1, opp_overlap 4919180 4919189 4919190 4919191, overlap 4919191 4919195 ATCAAAAAATGATTA AAAATCTTAGCCTACAATGCAT AAAAC ATGCATTGTAGGTTTA-ATTTA TTTTTTTAACTTATT TERM 5926 4919229 - 4919189 - T 75 -5.5 -4.88129 | opp_overlap 4919185 4919191 4919195, overlap 4919180 4919190 4919191 AAAAATGATTAAAAA TCTTAGCCTACAATGCATA AAA CATGCATTGTAGGTTTAAT TTATTTTTTTAACTT TERM 5927 4919228 - 4919190 - T 73 -9 -3.50437 | opp_overlap 4919185 4919191 4919195, overlap 4919189 4919191 AAAATGATTAAAAAT CTTAGCCTACAATGCATA AAA CATGCATTGTAGGTTTAA TTTATTTTTTTAACT TERM 5928 4919191 - 4919228 + T 100 -10.2 -5.21683 | gap 1, opp_overlap 4919190 4919189 4919191, overlap 4919185 4919195 AAATGATTAAAAATC TT-AGCCTACAATGCAT AAAAC ATGCATTGTAGGTTTAA TTTATTTTTTTAACT TERM 5929 4919227 - 4919191 - T 74 -10.3 -2.68636 | opp_overlap 4919191 4919185 4919195, overlap 4919190 4919189 AAATGATTAAAAATC TTAGCCTACAATGCATA AAA CATGCATTGTAGGTTTA ATTTATTTTTTTAAC TERM 5930 4919195 - 4919223 + T 100 -14.8 -4.3778 | opp_overlap 4919191 4919190 4919189, overlap 4919191 4919185 GATTAAAAATCTTAG CCTACAATGCAT AAAAC ATGCATTGTAGG TTTAATTTATTTTTT Shewana3_4097 4920120 - 4919230 - | hypothetical protein Shewana3_4098 4921239 - 4920166 - | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase Shewana3_4099 4922344 - 4921259 - | glycosyl transferase, group 1 Shewana3_4100 4923419 - 4922397 - | glycosyl transferase family protein Shewana3_4101 4923529 - 4924281 + | 3-deoxy-D-manno-octulosonic-acid kinase Shewana3_4102 4925621 - 4924296 - | coproporphyrinogen oxidase Shewana3_4103 4925816 - 4926463 + | TetR family transcriptional regulator Shewana3_4104 4926723 - 4927916 + | 2-amino-3-ketobutyrate coenzyme A ligase tdh 4927928 - 4928953 + | L-threonine 3-dehydrogenase Shewana3_4106 4929052 - 4929357 + | rhodanese domain-containing protein Shewana3_4107 4929354 - 4930196 + | rhomboid family protein TERM 5931 4930226 - 4930261 + T 82 -10.4 -3.66874 | opp_overlap 4930230, overlap 4930227 4930230 TTCCATGCTCGATTA AAAAGCAGGGTAAGCC TTAA GGCTTACCCTGCTGCA TTTAGGTGCCGTTAC TERM 5932 4930227 - 4930260 + T 95 -13.9 -2.79803 | opp_overlap 4930230, overlap 4930226 4930230 TCCATGCTCGATTAA AAAGCAGGGTAAGCC TTAA GGCTTACCCTGCTGC ATTTAGGTGCCGTTA TERM 5933 4930257 - 4930230 - T 100 -20 -4.7254 | opp_overlap 4930227 4930226 4930230 ATGCTCGATTAAAAA GCAGGGTAAGCC TTAA GGCTTACCCTGC TGCATTTAGGTGCCG TERM 5934 4930230 - 4930257 + T 100 -20 -2.66272 | opp_overlap 4930230, overlap 4930227 4930226 ATGCTCGATTAAAAA GCAGGGTAAGCC TTAA GGCTTACCCTGC TGCATTTAGGTGCCG Shewana3_4108 4930929 - 4930273 - | isoprenoid biosynthesis protein TERM 5935 4931935 - 4931913 - g 74 -4 -5.00616 | GTGTTGGCGAAAAAA CCGCATTAGC TAT GCTCACGGGG GCGGGTAGTGTCGCC TERM 5936 4933108 - 4933098 - g 80 -2.4 -5.52384 | CGGTCATCAAAAAAA CCCC TAA GGGC GCCCCCTCTACCGCG TERM 5937 4933884 - 4933868 - g 74 -2.2 -5.20216 | opp_overlap 4933875 GATATTATTAAAAAA GCCATG ATCAG CATTGC CGATTGGATAAAAAC Shewana3_4109 4931315 - 4934083 + | DNA polymerase I TERM 5938 4934135 - 4934158 + T 88 -9.6 -4.36903 | opp_overlap 4934135 GCTAACACTTACTAA GGCTCATTCT TTAC AGGATGGGCC TTTATATTTGGTGCG TERM 5939 4934726 - 4934750 + T 100 -15.8 -5.9663 | opp_overlap 4934719, overlap 4934715 GAGCCAAATTCTGGC GCCCCAGCAA CTTGT TTGCTGGGGC TTTTTTTTGCTCTTT TERM 5940 4934930 - 4934955 + T 100 -8.3 -5.40072 | overlap 4934932 AAAGAGCTAAAATTT TGGCCGGTGAC TAAT GTTATCGGCTA TTTTTTTGCCCCAAA TERM 5941 4934932 - 4934953 + T 86 -8.7 -4.34482 | overlap 4934930 AGAGCTAAAATTTTG GCCGGTGAC TAAT GTTATCGGC TATTTTTTTGCCCCA TERM 5942 4935047 - 4935019 - T 93 -8.9 -4.56367 | TATTGCAGAAAGAAA TGGCCGAATGC ACTCAAG GCATCCGACCA TAAAGCAAAAGACTT Shewana3_4110 4935720 - 4935061 - | GTPase EngB TERM 5943 4935699 - 4935685 - G 78 -6.4 -4.7497 | overlap 4935686 TGCACTGATTAAAAA CTTCGC CCT GCGAAA ATCTATATGAGATTC Shewana3_4111 4935890 - 4936513 + | cytochrome c, class I TERM 5944 4936563 - 4936514 - T 74 -10.2 -2.61695 | opp_overlap 4936514 4936515 4936531, overlap 4936513 4936531 GCTAGCCTGAAATAG GTTTTAGCGATAAAAAAGGGTG CACTGT CACCCTTTTTTATCGCCGCAAA GTTTACGTTAACGTA TERM 5945 4936514 - 4936564 + T 75 -8.6 -3.76125 | gap 1, opp_overlap 4936514 4936513 4936531, overlap 4936515 4936531 GCTAGCCTGAAATAG GTTT-TAGCGATAAAAAAGGGTG CACTGT CACCCTTTTTTATCGCCGCAAAG TTTACGTTAACGTAA TERM 5946 4936515 - 4936563 + T 83 -12.1 -2.85354 | gap 1, opp_overlap 4936514 4936513 4936531, overlap 4936514 4936531 CTAGCCTGAAATAGG TTT-TAGCGATAAAAAAGGGTG CACTGT CACCCTTTTTTATCGCCGCAAA GTTTACGTTAACGTA TERM 5947 4936546 - 4936531 - T 89 -6.1 -5.28176 | opp_overlap 4936515 4936514 4936531, overlap 4936514 4936513 TTTAGCGATAAAAAA GGGTG CACTGT CACCC TTTTTTATCGCCGCA TERM 5948 4936531 - 4936546 + T 87 -6.1 -5.24129 | opp_overlap 4936531 4936514 4936513, overlap 4936515 4936514 TTTAGCGATAAAAAA GGGTG CACTGT CACCC TTTTTTATCGCCGCA TERM 5949 4936581 - 4936564 - T 71 -8.5 -3.54424 | TTTTATCGCCGCAAA GTTTACG TTAA CGTAAAC TGATAAAGATTCATG Shewana3_4112 4936915 - 4936622 - | hypothetical protein TERM 5950 4936909 - 4936889 - G 71 -11.3 -2.82516 | overlap 4936891 TGCCCCATCAGGACA CAGTTTGAA TGA TTCAAACTG TAGCAAAGGAAGCTA TERM 5951 4937190 - 4937204 + H 73 -10 -2.91276 | opp_overlap 4937189 4937187 4937190, overlap 4937189 TTGGAATCAGAATAG GGTGCA AAA TGCACC GTTTGTAAGGCGGCA TERM 5952 4937204 - 4937190 - H 71 -10 -2.59447 | opp_overlap 4937190 4937189, overlap 4937189 4937187 TTGGAATCAGAATAG GGTGCA AAA TGCACC GTTTGTAAGGCGGCA TERM 5953 4937213 - 4937233 + H 100 -16.9 -5.73978 | ATGCACCGTTTGTAA GGCGGCAGT TTA ACTGCCGCC TTTTTTCTTTGTGAT TERM 5954 4937862 - 4937875 + G 76 -6.7 -4.56597 | opp_overlap 4937861 4937862 CATTATAAAAACAAT CTCAC TCAC GTGAG TTTTTACCAAAGACA Shewana3_4113 4937337 - 4937975 + | hypothetical protein Shewana3_4114 4938058 - 4938612 + | hypothetical protein TERM 5955 4938663 - 4938622 - f 76 -9.7 -3.39668 | gap 1, opp_overlap 4938634, overlap 4938624 4938634 TTTTAAATCTTAGAA TATGCATAAAAACAAAGCGC TCA GC-CTTTGTTTTTATGCAGT CTAAACAAGGAGTTT TERM 5956 4938661 - 4938624 - f 100 -16.7 -3.2665 | gap 1, opp_overlap 4938634, overlap 4938622 4938634 TTAAATCTTAGAATA TGCATAAAAACAAAGCGC TCA GC-CTTTGTTTTTATGCA GTCTAAACAAGGAGT TERM 5957 4938634 - 4938651 + F 74 -4.9 -4.8667 | gap 1, opp_overlap 4938624 4938622 4938634 GAATATGCATAAAAA CAAAGCGC TCA GC-CTTTG TTTTTATGCAGTCTA TERM 5958 4938651 - 4938634 - f 77 -4.9 -4.91459 | gap 1, opp_overlap 4938634, overlap 4938624 4938622 GAATATGCATAAAAA CAAAGCGC TCA GC-CTTTG TTTTTATGCAGTCTA TERM 5959 4938788 - 4938777 - g 74 -7.2 -4.24283 | overlap 4938774 AAGCAACAGAAACAA CGCC AACA GGCG CTCACTGCCGAACGT Shewana3_4115 4938681 - 4939148 + | hypothetical protein TERM 5960 4939190 - 4939163 - f 100 -12.8 -3.42013 | opp_overlap 4939170 AGCTGACAACATTAA CCTCAAGGCCAA AACC TTGGCTTTGAGG CCCAATCGCTCCCGC Shewana3_4116 4939443 - 4940783 + | coproporphyrinogen III oxidase TERM 5961 4940825 - 4940808 - T 91 -7 -5.45652 | opp_overlap 4940808 ATCTCCAATAAAAAA TCCGAC TCTAAT GTCGGA TTTTTTTATTGGGCA TERM 5962 4940808 - 4940825 + T 100 -7 -5.7946 | opp_overlap 4940808 ATCTCCAATAAAAAA TCCGAC TCTAAT GTCGGA TTTTTTTATTGGGCA Shewana3_4117 4941850 - 4940855 - | adenosine deaminase TERM 5963 4942164 - 4942150 - g 90 -10 -4.5123 | AATCCACCAAACAAA CAACGG TAG CCGTTG CGCAGTCCACGGCCA Shewana3_4118 4942062 - 4943867 + | hypothetical protein TERM 5964 4943879 - 4943902 + F 90 -11.7 -3.72576 | TTAAGCTCATCCCAA GGGAGCGGG TATTTT CCTGCTCCC TTTCCTGCCCCCCCA Shewana3_4119 4943969 - 4944982 + | alpha/beta hydrolase fold Shewana3_4120 4947389 - 4944939 - | diguanylate phosphodiesterase TERM 5965 4945587 - 4945554 - G 71 -6 -4.39696 | GGCTAAATCAATAAA TTTAGCGACCGGGA CAATTT CCCCATCCGCTAAA TGCCAGCGAGACAGA TERM 5966 4946723 - 4946705 - G 77 -11 -3.37198 | overlap 4946703 TTTGTAGAGACAAGA CCTCGGAG GCA CTCCAAGG CACTTGGGTCGAAAA TERM 5967 4947610 - 4947569 - R 89 -10.4 -3.9716 | gap 1, opp_overlap 4947581 4947607, overlap 4947581 TAAGTTAATAAAATA GAAAACAAAAAAGCCAGCT TATTC AGCTGGC-TTTCTGCTCTC TTTCGAGACTGTTTG TERM 5968 4947599 - 4947581 - R 100 -10.3 -5.8901 | opp_overlap 4947581, overlap 4947569 ATAGAAAACAAAAAA GCCAGCT TATTC AGCTGGC TTTCTGCTCTCTTTC TERM 5969 4947581 - 4947599 + r 91 -10.3 -4.08111 | opp_overlap 4947581 4947569 ATAGAAAACAAAAAA GCCAGCT TATTC AGCTGGC TTTCTGCTCTCTTTC TERM 5970 4949105 - 4949077 - R 72 -8.1 -3.85698 | TGTGTTTTTGATAAA CAGTTGCAGCCAC CTG GTATCTGCGACTG CCGTCAGCTTAGGGA TERM 5971 4949560 - 4949576 + r 85 -9.4 -4.08546 | overlap 4949542 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 5972 4950358 - 4950370 + r 83 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 5973 4950938 - 4950978 + r 84 -2.7 -5.63374 | opp_overlap 4950945 4950950 4950952 4950954, overlap 4950952 GGACTCGCCTTAGAC TTGAATATTCAAGACACTT AAA AAGTGTTTTAAGAACTCAA TTTTTTTCGTATTAA TERM 5974 4952805 - 4952827 + r 70 -7.1 -3.76952 | gap 1 TGATTTAAATTTTGA TTACTC-GCC AAAC GGCAGAGTAA TTTCGATTAACTCAA TERM 5975 4952933 - 4952947 + r 73 -8.6 -3.63805 | TCAGCGGGTCAGGGC TGCGTA TTC TACGCA TTTCCCCTATCGCGT TERM 5976 4953197 - 4953156 - R 100 -14.7 -3.21354 | opp_overlap 4953158 4953169, overlap 4953158 4953162 4953168 4953169 CTAGATATCCAGCAA CATGAATAAAAAGGGGGCT AAAC AGCCCCTTTTTTATTCATT TGGTTAACGAAACAG TERM 5977 4953195 - 4953158 - R 100 -17.3 -3.1676 | opp_overlap 4953158 4953169, overlap 4953156 4953162 4953168 4953169 AGATATCCAGCAACA TGAATAAAAAGGGGGCT AAAC AGCCCCTTTTTTATTCA TTTGGTTAACGAAAC TERM 5978 4953158 - 4953195 + r 100 -19.5 -3.90112 | opp_overlap 4953156 4953158 4953162 4953168 4953169, overlap 4953169 AGATATCCAGCAACA TGAATAAAAAGGGGGCT AAAC AGCCCCTTTTTTATTCA TTTGGTTAACGAAAC TERM 5979 4953191 - 4953162 - R 95 -12.3 -3.39717 | opp_overlap 4953158 4953169, overlap 4953158 4953156 4953168 4953169 ATCCAGCAACATGAA TAAAAAGGGGGCT AAAC AGCCCCTTTTTTA TTCATTTGGTTAACG TERM 5980 4953185 - 4953168 - R 88 -6.9 -5.19251 | opp_overlap 4953158 4953169, overlap 4953162 4953158 4953156 4953169 CAACATGAATAAAAA GGGGGCT AAAC AGCCCCT TTTTTATTCATTTGG TERM 5981 4953169 - 4953184 + r 100 -10.4 -5.59655 | opp_overlap 4953168 4953162 4953158 4953156 4953169, overlap 4953158 AACATGAATAAAAAG GGGGCT AAAC AGCCCC TTTTTTATTCATTTG TERM 5982 4953184 - 4953169 - R 82 -10.4 -3.69924 | opp_overlap 4953169 4953158, overlap 4953168 4953162 4953158 4953156 AACATGAATAAAAAG GGGGCT AAAC AGCCCC TTTTTTATTCATTTG Shewana3_4121 4954643 - 4953216 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 5983 4953482 - 4953498 + g 76 -5.9 -4.61199 | GGGTGAAGGTGTTTT CAATCAG CCC TTGATTG TTTTCTCTATAGAGT Shewana3_4122 4954735 - 4955085 + | hypothetical protein TERM 5984 4955931 - 4955919 - g 73 -9.1 -3.6869 | opp_overlap 4955915 GAGATTAACTCCAAA TCGCC GAC GGCGA TGCGTATGCTGAAGT Shewana3_4123 4955202 - 4956104 + | naphthoate synthase TERM 5985 4956121 - 4956148 + F 100 -15.8 -5.06103 | opp_overlap 4956127 CGAAGCTAATTGCTA TATAAAGCCCTC ATTT GAGGGCTTTATA TTTTTTAGCGCTTAT TERM 5986 4956142 - 4956127 - f 89 -10.4 -4.0492 | opp_overlap 4956121 TAATTGCTATATAAA GCCCTC ATTT GAGGGC TTTATATTTTTTAGC Shewana3_4124 4956272 - 4956475 + | hypothetical protein TERM 5987 4956550 - 4956508 - T 93 -10.7 -4.2008 | opp_overlap 4956515 4956522, overlap 4956522 ATATACTCTAATAAA GCCCCAATAAAAAACCGCC ATTTA GGCGGTTTTTTATTGCTTC CGATTTATTCCACCG TERM 5988 4956515 - 4956543 + T 100 -14.8 -3.39471 | opp_overlap 4956508 4956522, overlap 4956522 CTAATAAAGCCCCAA TAAAAAACCGCC ATTTA GGCGGTTTTTTA TTGCTTCCGATTTAT TERM 5989 4956536 - 4956522 - T 100 -8.5 -5.45652 | opp_overlap 4956522 4956515, overlap 4956508 AGCCCCAATAAAAAA CCGCC ATTTA GGCGG TTTTTTATTGCTTCC TERM 5990 4956522 - 4956536 + T 100 -8.5 -5.5604 | opp_overlap 4956508 4956522, overlap 4956515 AGCCCCAATAAAAAA CCGCC ATTTA GGCGG TTTTTTATTGCTTCC Shewana3_4125 4958384 - 4956555 - | glutamine--fructose-6-phosphate transaminase Shewana3_4126 4959230 - 4958460 - | DeoR family transcriptional regulator TERM 5991 4959244 - 4959264 + r 84 -11.3 -3.21276 | opp_overlap 4959236 4959247, overlap 4959247 ATAAAACCTTTCAGT TAACTTTCG ATT CGAAAGTTA TATTATAGAGAAACG TERM 5992 4959247 - 4959261 + r 75 -8.6 -3.7511 | opp_overlap 4959236 4959247, overlap 4959244 AAACCTTTCAGTTAA CTTTCG ATT CGAAAG TTATATTATAGAGAA TERM 5993 4959374 - 4959397 + r 76 -9.6 -3.53811 | opp_overlap 4959374 AAAAGCAATAAAAAA GCAGTTCACC TATC GATGAACTGC TTTGAGCGAGCTAAA TERM 5994 4959397 - 4959374 - R 100 -11.8 -5.61689 | opp_overlap 4959374 AAAAGCAATAAAAAA GCAGTTCACC TATC GATGAACTGC TTTGAGCGAGCTAAA Shewana3_4127 4961542 - 4959434 - | TonB-dependent siderophore receptor TERM 5995 4960764 - 4960779 + g 70 -4.6 -4.69326 | TTATCTAACCAACCG CCGGCA TCAA TTCCGG TTTTATCTTGGGTAT TERM 5996 4961782 - 4961756 - R 100 -9.5 -5.24531 | opp_overlap 4961758 4961762, overlap 4961758 AGCTTTGACAAAAAA CATAAAGCGGC AATAA GCCGCTTTATT TTTACTGAGAACAGA TERM 5997 4961758 - 4961780 + r 100 -12.1 -4.72272 | opp_overlap 4961756 4961758, overlap 4961762 CTTTGACAAAAAACA TAAAGCGGC AATAA GCCGCTTTA TTTTTACTGAGAACA TERM 5998 4961780 - 4961758 - R 100 -12.1 -4.25873 | opp_overlap 4961758 4961762, overlap 4961756 CTTTGACAAAAAACA TAAAGCGGC AATAA GCCGCTTTA TTTTTACTGAGAACA TERM 5999 4961762 - 4961776 + r 100 -8.5 -4.91852 | opp_overlap 4961758 4961756, overlap 4961758 GACAAAAAACATAAA GCGGC AATAA GCCGC TTTATTTTTACTGAG Shewana3_4128 4963166 - 4961802 - | glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase TERM 6000 4963291 - 4963314 + r 100 -11 -4.36914 | opp_overlap 4963291 AAAACCAACAAAAAA GGCGGGTATC TTTC GATAACCGCC TTTTATCACAAACAA TERM 6001 4963314 - 4963291 - R 100 -11 -5.61689 | opp_overlap 4963291 AAAACCAACAAAAAA GGCGGGTATC TTTC GATAACCGCC TTTTATCACAAACAA Shewana3_4129 4963764 - 4963336 - | F0F1 ATP synthase subunit epsilon TERM 6002 4963776 - 4963807 + r 80 -4.6 -5.16151 | opp_overlap 4963783, overlap 4963780 4963783 CCATCCCGTTCTCCT TAAAAAACTAAGTA TGAC TACTTAGTTATTTC TTTTTGTTAGCTTTC TERM 6003 4963780 - 4963803 + r 78 -5.4 -5.05606 | opp_overlap 4963783, overlap 4963776 4963783 CCCGTTCTCCTTAAA AAACTAAGTA TGAC TACTTAGTTA TTTCTTTTTGTTAGC TERM 6004 4963783 - 4963800 + r 81 -7.1 -4.5815 | opp_overlap 4963783, overlap 4963780 4963776 GTTCTCCTTAAAAAA CTAAGTA TGAC TACTTAG TTATTTCTTTTTGTT TERM 6005 4963800 - 4963783 - R 89 -7.1 -5.00616 | opp_overlap 4963783 4963780 4963776 GTTCTCCTTAAAAAA CTAAGTA TGAC TACTTAG TTATTTCTTTTTGTT Shewana3_4130 4965192 - 4963801 - | F0F1 ATP synthase subunit beta Shewana3_4131 4966088 - 4965228 - | F0F1 ATP synthase subunit gamma TERM 6006 4965982 - 4965994 + g 83 -9.1 -4.2828 | GCAGCCATGCGTTCC TGCGC TCT GCGCA TTTTGCTGGCTGCCA Shewana3_4132 4967680 - 4966139 - | F0F1 ATP synthase subunit alpha TERM 6007 4967380 - 4967362 - G 74 -12.4 -2.72991 | overlap 4967364 CCAGAGTGTTAACTA CACGGCCT AAC AGGCCGCG ACCGACTGGAACTTC TERM 6008 4967378 - 4967364 - G 73 -11.4 -2.90901 | overlap 4967362 AGAGTGTTAACTACA CGGCCT AAC AGGCCG CGACCGACTGGAACT Shewana3_4133 4968228 - 4967695 - | F0F1 ATP synthase subunit delta Shewana3_4134 4968715 - 4968245 - | F0F1 ATP synthase subunit B Shewana3_4135 4969005 - 4968754 - | F0F1 ATP synthase subunit C Shewana3_4136 4969870 - 4969076 - | F0F1 ATP synthase subunit A TERM 6009 4969678 - 4969705 + g 70 -2.6 -5.00884 | gap 1, overlap 4969682 TCTCGATAAAGCATT GCAGCTTACCGGG AAC CCCTG-AAGTCGC TTTTTTACCAACACT Shewana3_4137 4970266 - 4969883 - | ATP synthase I chain TERM 6010 4969966 - 4969951 - G 100 -6.8 -5.50774 | CATAACAAACAAAAA GCGGCA AAAA TGCCAC CTCAAGCTTGCTAAA Shewana3_4138 4971370 - 4970492 - | chromosome segregation DNA-binding protein Shewana3_4139 4972168 - 4971380 - | chromosome segregation ATPase