TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.445312 %AT, 3848580 nt, 29895 terms. Intergenic: 0.555276 %AT, H2T: 450741 nt, 4220 terms; T2T: 141519 nt, 3413 terms; H2H: 185842 nt, 3095 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|127510935|ref|NC_009092.1| Shewanella loihica PV-4, complete genome (length 4602594) TERM 1 378 - 366 - g 77 -10.5 -3.72576 | CGCCCTGCGAGCAAA CCGGC AGC GCCGG CTGCCTCGACCAAGA dnaA 111 - 1490 + | chromosomal replication initiation protein Shew_0002 1511 - 2611 + | DNA polymerase III, beta subunit TERM 2 2620 - 2645 + F 100 -13.3 -3.67775 | opp_overlap 2622, overlap 2622 TCTCTAGTCTTAAGT TATGCACGCCC GCAA GGGCGTGCATC TTCTTAGATGGCCCT TERM 3 2643 - 2622 - f 100 -15.9 -2.53263 | opp_overlap 2620 2622 TCTAGTCTTAAGTTA TGCACGCCC GCAA GGGCGTGCA TCTTCTTAGATGGCC TERM 4 2622 - 2643 + F 100 -15.9 -3.41988 | opp_overlap 2622, overlap 2620 TCTAGTCTTAAGTTA TGCACGCCC GCAA GGGCGTGCA TCTTCTTAGATGGCC Shew_0003 2684 - 3766 + | DNA replication and repair protein RecF Shew_0004 3783 - 6200 + | DNA gyrase, B subunit TERM 5 6237 - 6220 - f 100 -14.1 -4.11692 | opp_overlap 6220 TAGCGAGTTTTAAAA GCCCCGG TCTT CCGGGGC TTTTTTGTATCTGTG TERM 6 6220 - 6237 + F 100 -14.1 -5.4492 | opp_overlap 6220 TAGCGAGTTTTAAAA GCCCCGG TCTT CCGGGGC TTTTTTGTATCTGTG TERM 7 6572 - 6537 - g 74 -10.5 -3.54741 | gap 1, opp_overlap 6540, overlap 6524 6538 GATCAGCCTGTCAAA CGGTCAGCCTGATGCT GATTT AGCATC-GGCAGACCA GCAGAATAGTTCGAC TERM 8 6571 - 6538 - g 71 -11.8 -2.7263 | gap 1, opp_overlap 6540, overlap 6524 6537 ATCAGCCTGTCAAAC GGTCAGCCTGATGCT GATTT AGCATC-GGCAGACC AGCAGAATAGTTCGA Shew_0005 6322 - 7041 + | hypothetical protein Shew_0006 7803 - 7075 - | LamB/YcsF family protein Shew_0007 8725 - 7793 - | urea amidolyase related protein Shew_0008 9408 - 8722 - | allophanate hydrolase subunit 1 TERM 9 9467 - 9484 + r 100 -6.9 -5.93252 | opp_overlap 9467 TCCGGACATAAAAAA CGCACCC CTGA GGATGCG TTTTTTGTTTTTAAG TERM 10 9484 - 9467 - R 100 -9.1 -5.36441 | opp_overlap 9467 TCCGGACATAAAAAA CGCACCC CTGA GGATGCG TTTTTTGTTTTTAAG glyS 11576 - 9507 - | glycyl-tRNA synthetase subunit beta glyQ 12494 - 11589 - | glycyl-tRNA synthetase subunit alpha TERM 11 12610 - 12600 - H 81 -3.2 -5.38348 | AAAAATAGGAAAAAA CACC ATG GATG TAAAGCGTTGTGGCT TERM 12 12781 - 12794 + G 73 -8.1 -4.10925 | CAGCAAAATTATGAG TCGGC CTTT GCCGA TTTTGACCCCTATGT TERM 13 12945 - 12962 + G 72 -6.3 -4.37886 | gap 1 GCAGGGCAACGACTT CTCC-GAG TTT CTCTGGAG TTTTGTCGGCGGTCA TERM 14 13108 - 13145 + G 86 -11.3 -4.1891 | gap 1, overlap 13084 TGCTATGCCTTCATG CAGGCGGTAGGTATGGTC AAC GACCACACC-GCCGACTG TTTCTGTTACCAAGA Shew_0011 12604 - 13173 + | DNA-3-methyladenine glycosylase I Shew_0012 13859 - 13179 - | hypothetical protein TERM 15 13977 - 13956 - R 100 -9.5 -5.80248 | opp_overlap 13956 CAAGATATAAAAAAA GGATGTTCC ACGT GAAACATCC TTTTTGCTTTTTAAG TERM 16 13956 - 13977 + r 91 -7.3 -5.18355 | opp_overlap 13956 CAAGATATAAAAAAA GGATGTTCC ACGT GAAACATCC TTTTTGCTTTTTAAG Shew_0013 17275 - 14072 - | amidohydrolase TERM 17 15195 - 15213 + g 100 -10.2 -4.95547 | overlap 15196 GGCACCTGAGTGTTG GCGTCGCC GAC GGCGACGA TTTTGTTATTCTCGA TERM 18 15196 - 15212 + g 84 -13.7 -3.56244 | overlap 15195 GCACCTGAGTGTTGG CGTCGCC GAC GGCGACG ATTTTGTTATTCTCG TERM 19 16217 - 16233 + g 71 -7.3 -4.19238 | GAAGCGCACCGAAGG CTGAACT GCC AGTTCGG TTTTCACCTTGAAGG TERM 20 17556 - 17538 - R 95 -11.7 -4.208 | GGTTAAAAGTATAAA GGCAGCC TAGGT GGCTGCC TGTGGAGGAGATAAA Shew_0014 18018 - 17578 - | hypothetical protein Shew_0015 18429 - 18184 - | SirA family protein TERM 21 18558 - 18537 - R 81 -9.5 -3.89346 | opp_overlap 18528 18537 18533, overlap 18554 18556 TTGTGATCCTATAAA GGATGTTTC ACGT GAAACACCC TGGATTATACCAGAG Shew_0016 19027 - 18563 - | ybaK/ebsC protein Shew_0017 19499 - 19011 - | GCN5-related N-acetyltransferase TERM 22 19824 - 19806 - R 100 -14.6 -5.64421 | opp_overlap 19806 ACGTGAAACAAAAAA GGAGCGAC CCA GTCGCTCC TTTTCTTAGGCAAAA TERM 23 19806 - 19824 + r 100 -14.6 -4.63218 | opp_overlap 19806 ACGTGAAACAAAAAA GGAGCGAC CCA GTCGCTCC TTTTCTTAGGCAAAA fadA 21017 - 19854 - | 3-ketoacyl-CoA thiolase fadB 23189 - 21039 - | multifunctional fatty acid oxidation complex subunit alpha TERM 24 23333 - 23348 + H 73 -4.8 -4.72029 | ATTTCAACACCCAAT TTAAAC ACTT GTTTAA TTTTGTTCGATTAGG Shew_0020 23495 - 24817 + | proline dipeptidase TERM 25 24872 - 24912 + G 79 -12.3 -3.65351 | gap 1, opp_overlap 24880, overlap 24880 CCAAGCCGATCACCA TAGAAGAAGAGATAAAGC ATAGCC GCTTTATCTCTT-TTCTA TTTCACTGCCCATCG TERM 26 24880 - 24905 + G 95 -10.6 -4.80455 | opp_overlap 24880, overlap 24872 ATCACCATAGAAGAA GAGATAAAGC ATAGCC GCTTTATCTC TTTTCTATTTCACTG TERM 27 24905 - 24880 - g 83 -11.3 -3.91332 | opp_overlap 24880 24872 ATCACCATAGAAGAA GAGATAAAGCA TAGC CGCTTTATCTC TTTTCTATTTCACTG TERM 28 25053 - 25081 + G 73 -12.3 -3.02144 | CAGCAGCGATGATGG TGAGCCGTCCGGC AGT GCCGGGCGTCCCA TGTTGGCCAGCCTGC Shew_0021 24832 - 25446 + | hypothetical protein TERM 29 25627 - 25646 + G 81 -4.2 -5.01553 | CCATTATAAGAATTA CAGGCCTA CTCA TGGGGCTG TTTTCTTTGTCGCTT Shew_0022 25599 - 27056 + | TrkH family potassium uptake protein Shew_0023 27056 - 27583 + | protoporphyrinogen oxidase TERM 30 27561 - 27592 + T 76 -11 -3.02461 | opp_overlap 27566, overlap 27566 AGGTGCAGGAGTTTG CGAAAGCCTTTAGC GAGC GTTAAAGGCTTTCA TCTTCGCAGGAATTA TERM 31 27566 - 27587 + T 81 -9.5 -3.92324 | opp_overlap 27566, overlap 27561 CAGGAGTTTGCGAAA GCCTTTAGC GAGC GTTAAAGGC TTTCATCTTCGCAGG Shew_0024 27910 - 27605 - | ArsR family transcriptional regulator Shew_0025 28183 - 28716 + | protoporphyrinogen oxidase Shew_0026 28832 - 29368 + | hypothetical protein Shew_0027 30028 - 29381 - | glutathione S-transferase domain-containing protein Shew_0028 31009 - 30110 - | LysR family transcriptional regulator TERM 32 31108 - 31097 - H 76 -5.8 -4.85782 | opp_overlap 31094 31097 TGTTGTAAAAATAAA CCCA TATA TGGG TTATTTATTGTTCAT TERM 33 31097 - 31108 + H 70 -5.8 -4.34486 | opp_overlap 31097, overlap 31094 TGTTGTAAAAATAAA CCCA TATA TGGG TTATTTATTGTTCAT TERM 34 31438 - 31457 + G 72 -10 -3.68222 | gap 1, opp_overlap 31437 31436 TCGTCGACAACAAGT GGCCAGCCT ATG AGGC-GGCC TTCTTCAACTTCGAG Shew_0029 31239 - 31928 + | 3-methyladenine DNA glycosylase TERM 35 32044 - 32027 - T 100 -12.7 -5.03314 | GCCATGTGCAAAAAA GCCAGCC CAAG GGCTGGC AAAGACGTGCAGAGA Shew_0030 32831 - 32076 - | hypothetical protein TERM 36 33209 - 33224 + H 81 -3.2 -5.45652 | overlap 33211 TACCCCATAGCGCCT TACCCG TGCA TGGGTG TTTTTTGTTGCGGCT Shew_0031 33256 - 34416 + | RND family efflux transporter MFP subunit Shew_0032 34426 - 37575 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 37 37591 - 37620 + F 93 -13.7 -3.17392 | opp_overlap 37597, overlap 37597 GCCTAGCCATTTCGT CAAAAAGCCCGGT AATA ACCGGGCTTTTTA TTGCCTTAGGGGCTG TERM 38 37597 - 37614 + F 100 -12.7 -5.13741 | opp_overlap 37597, overlap 37591 CCATTTCGTCAAAAA GCCCGGT AATA ACCGGGC TTTTTATTGCCTTAG TERM 39 37614 - 37597 - f 100 -12.7 -4.57569 | opp_overlap 37597 37591 CCATTTCGTCAAAAA GCCCGGT AATA ACCGGGC TTTTTATTGCCTTAG Shew_0033 37798 - 39639 + | peptidase M14, carboxypeptidase A TERM 40 39676 - 39636 - T 87 -13.5 -2.91264 | opp_overlap 39639 39649, overlap 39649 TCCCGTACTGAGAGA CTAAACAAAAAAAGCAGGC CTG GCCTGCTTTTTTTATGTCG GTTTATTCATCCCTA TERM 41 39639 - 39673 + T 77 -11.6 -2.77283 | opp_overlap 39636 39649, overlap 39649 CGTACTGAGAGACTA AACAAAAAAAGCAGGC CTG GCCTGCTTTTTTTATG TCGGTTTATTCATCC TERM 42 39649 - 39663 + T 100 -11.4 -5.72616 | opp_overlap 39636 39649, overlap 39639 GACTAAACAAAAAAA GCAGGC CTG GCCTGC TTTTTTTATGTCGGT TERM 43 39663 - 39649 - T 100 -11.4 -5.99154 | opp_overlap 39649 39639, overlap 39636 GACTAAACAAAAAAA GCAGGC CTG GCCTGC TTTTTTTATGTCGGT Shew_0034 40504 - 39701 - | methyltransferase type 12 TERM 44 40623 - 40606 - H 74 -4.1 -4.88711 | opp_overlap 40612 40614, overlap 40609 40610 40612 ATAACATAGCAAAAA CAACTAG ATAA CTTGTTG GCATGTTATCTGCTT Shew_0035 40708 - 41478 + | putative lipoprotein Shew_0036 42389 - 41568 - | phosphoesterase, PA-phosphatase related Shew_0037 43300 - 42482 - | phosphoesterase, PA-phosphatase related Shew_0038 43756 - 43463 - | excinuclease ABC subunit C TERM 45 43803 - 43775 - R 71 -9.6 -3.04263 | opp_overlap 43774 43798, overlap 43742 AGGCGAGTCCCAACA GGCCGAAGAAGA AGGCG TACTCTTCGGCC GTGTCCTCAAAGTGA Shew_0039 45818 - 43758 - | oligopeptidase B TERM 46 46593 - 46557 - g 70 -12.3 -2.71364 | CGAGCGGGTGAAGCA GCTGGAGCTACCGCCCA TGG TGGAAGACAACTCCAGC CAATACGGCACCGCC Shew_0040 46327 - 46980 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 47 47107 - 47093 - f 70 -10 -2.57274 | opp_overlap 47093, overlap 47083 47092 47091 GAAATCGATAAAATG GCCGAT CTC ATCGGC TTTTTTTGTGTCAAT TERM 48 47093 - 47107 + F 100 -10 -5.72616 | opp_overlap 47083 47093 47092 47091 GAAATCGATAAAATG GCCGAT CTC ATCGGC TTTTTTTGTGTCAAT TERM 49 47561 - 47576 + G 72 -6 -4.36914 | opp_overlap 47559, overlap 47562 CCCTGCAGAACGAGC GCGGCC TGTC GGCCGG TTTTGTCGCCAGCCA Shew_0041 47293 - 50577 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TERM 50 50748 - 50719 - T 72 -9.9 -3.24708 | gap 1, opp_overlap 50723 50727, overlap 50715 50729 50730 CATTTGGGAAACATA GCGGGGGAAAGGCG GGG CGCCATGCCCC-GC ATCTGGCTTATTCGC TERM 51 50749 - 50729 - T 75 -9.6 -3.5525 | opp_overlap 50727 50723, overlap 50719 50715 50730 ACATAGCGGGGGAAA GGCGGGGC GCCAT GCCCCGCA TCTGGCTTATTCGCC TERM 52 50748 - 50730 - T 85 -13.1 -2.72829 | opp_overlap 50727 50723, overlap 50719 50729 50715 CATAGCGGGGGAAAG GCGGGGC GCCAT GCCCCGC ATCTGGCTTATTCGC Shew_0042 51280 - 50756 - | Ferritin, Dps family protein Shew_0043 51408 - 51596 + | hypothetical protein TERM 53 54736 - 54774 + G 72 -10.2 -3.40403 | gap 1, overlap 54716 54773 CGCTGATGCTGGTGC CCGGCGTC-GGCAGCGA GATCTA TCGCGGCCTGGCGGCGG TTATCGTCGGCGGCA TERM 54 54890 - 54871 - g 71 -11.4 -3.1552 | opp_overlap 54870, overlap 54869 GCCCAGTTACCAATA GGCTGGCC GACG AGCCAGCC CTCTCATCCACCACA Shew_0044 51810 - 54920 + | acriflavin resistance protein Shew_0045 54917 - 55987 + | RND family efflux transporter MFP subunit TERM 55 56011 - 56037 + F 100 -14.4 -4.89009 | opp_overlap 56006 TTTGGAGATAGTCGA GCCGACATCCGC CCA GCTGGTGTCGGC TTTTTGGTTGAATCT TERM 56 56546 - 56535 - g 78 -5.8 -4.76041 | CAGATGCAGGAAAAA GTCG AGGT CGAC GGCGACAGCATAGTG Shew_0046 56169 - 57416 + | molybdenum cofactor synthesis domain-containing protein Shew_0047 57427 - 58194 + | molybdopterin biosynthesis protein MoeB TERM 57 58259 - 58242 - T 100 -12.7 -3.96068 | opp_overlap 58242 GTAGTTGAATAAGAA GCGAGGC TAAG GCCTCGC TTTTTTGTGTGTCAT TERM 58 58242 - 58259 + T 100 -12.7 -5.43414 | opp_overlap 58242 GTAGTTGAATAAGAA GCGAGGC TAAG GCCTCGC TTTTTTGTGTGTCAT Shew_0048 59020 - 58313 - | short chain dehydrogenase TERM 59 58504 - 58553 + g 75 -9.3 -4.07568 | gap 1, opp_overlap 58484 58482, overlap 58507 58532 GCGCCGGGGCGATGG CGTTGACCTTCACCTTTGGGGCCA ACT TGGCGGCGAAGGAGAGGGTCA-TG TTTTCCAGCGCGGCC TERM 60 58507 - 58551 + g 86 -14.3 -3.63744 | opp_overlap 58484 58482, overlap 58504 58532 CCGGGGCGATGGCGT TGACCTTCACCTTTGGGGCCA ACT TGGCGGCGAAGGAGAGGGTCA TGTTTTCCAGCGCGG Shew_0049 59401 - 60972 + | choline/carnitine/betaine transporter TERM 61 61015 - 60991 - T 78 -8.5 -4.11484 | opp_overlap 60995, overlap 60993 60995 GGGAATCGTGGAAAA TAGAGGAGGCC GTT GGCCTCCTTTT TTATTGGCAGCGCCT TERM 62 61013 - 60993 - T 83 -11.1 -3.6543 | opp_overlap 60995, overlap 60991 60995 GAATCGTGGAAAATA GAGGAGGCC GTT GGCCTCCTT TTTTATTGGCAGCGC TERM 63 60995 - 61011 + T 100 -13.7 -5.4505 | opp_overlap 60995 60993 60991 ATCGTGGAAAATAGA GGAGGCC GTT GGCCTCC TTTTTTATTGGCAGC TERM 64 61011 - 60995 - T 100 -13.7 -3.40175 | opp_overlap 60995, overlap 60993 60991 ATCGTGGAAAATAGA GGAGGCC GTT GGCCTCC TTTTTTATTGGCAGC Shew_0050 61795 - 61076 - | DNA polymerase III subunit epsilon Shew_0051 63692 - 61803 - | cyclic nucleotide-binding protein Shew_0052 64693 - 63788 - | DNA binding domain-containing protein Shew_0053 65562 - 64717 - | formate dehydrogenase, subunit FdhD TERM 65 65687 - 65697 + H 70 -6.8 -4.08692 | CCCTTTTCTGTCCCG GCCA AAA TGGC TTTTAGGACAAATTG Shew_0054 65858 - 66328 + | hypothetical protein Shew_0055 66328 - 66918 + | hypothetical protein Shew_0056 67100 - 68776 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 66 69222 - 69233 + G 71 -7.2 -4.07568 | overlap 69209 GAGGCGCCTGGCTTC CGCC AGTT GGCG TTTTACCAACGCCAC Shew_0057 68787 - 69452 + | cytoplasmic chaperone TorD family protein TERM 67 69471 - 69492 + F 79 -11.5 -3.01712 | GTGGTTTAGCTTAGT GGTCGGCGC CAAC GCGCCGACA TATTGAAACCGAGGG Shew_0058 69620 - 69820 + | twin-arginine translocation pathway signal Shew_0059 69872 - 72721 + | molybdopterin oxidoreductase Shew_0060 72749 - 73339 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 68 73376 - 73346 - f 70 -9.1 -3.27525 | gap 1, opp_overlap 73351, overlap 73348 73351 GGCGTTTAAAGTGAA TAGTACCGTAAGCC TTCG GGCTTACGGT-CTG TAAAGGAGTGACTAT TERM 69 73374 - 73348 - f 83 -11.7 -3.20349 | gap 1, opp_overlap 73351, overlap 73346 73351 CGTTTAAAGTGAATA GTACCGTAAGCC TTCG GGCTTACGGT-C TGTAAAGGAGTGACT TERM 70 73351 - 73372 + F 89 -14.5 -2.87564 | opp_overlap 73348 73346 73351 TTAAAGTGAATAGTA CCGTAAGCC TTCG GGCTTACGG TCTGTAAAGGAGTGA TERM 71 73372 - 73351 - f 87 -14.5 -2.79248 | opp_overlap 73351, overlap 73348 73346 TTAAAGTGAATAGTA CCGTAAGCC TTCG GGCTTACGG TCTGTAAAGGAGTGA Shew_0061 73390 - 74397 + | formate dehydrogenase, gamma subunit TERM 72 74485 - 74457 - f 80 -11 -3.32765 | opp_overlap 74458, overlap 74446 74458 74460 AAGCGCATAGATGAA GCACCCCACCTA GGCAT TAGGCGGGGTGT TTTTTTATGGTTAAA TERM 73 74458 - 74484 + F 100 -13 -5.71983 | opp_overlap 74446 74457 74458 74460 AGCGCATAGATGAAG CACCCCACCTAG GCA TTAGGCGGGGTG TTTTTTTATGGTTAA TERM 74 74484 - 74458 - f 87 -14.5 -2.59177 | opp_overlap 74458, overlap 74446 74457 74460 AGCGCATAGATGAAG CACCCCACCTA GGCAT TAGGCGGGGTG TTTTTTTATGGTTAA TERM 75 74482 - 74460 - f 77 -11.3 -2.83345 | opp_overlap 74458, overlap 74446 74458 74457 CGCATAGATGAAGCA CCCCACCTA GGCAT TAGGCGGGG TGTTTTTTTATGGTT Shew_0062 74889 - 75086 + | hypothetical protein TERM 76 76504 - 76488 - g 73 -9.4 -3.96327 | ACGGCGTATTAGAAA CGCCAG AGAAG CTGGCG CAGAAAGATCGCGTG TERM 77 77009 - 76963 - g 100 -15.8 -4.2349 | GCTGCACACCCAAAA CTGGGGCACCTTCAGCAACAAG ACG CTTGAAGCAGAAGGCGGCCCAG CCAAGGGCGAAACCT Shew_0063 75104 - 77959 + | molybdopterin oxidoreductase Shew_0064 77980 - 78549 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 78 78602 - 78577 - f 100 -19.1 -3.82592 | opp_overlap 78567 ATAAGGCCACAACAA TCCACACCGGG CTCG CCCGGTGTGGA CGATAAGGATGTAAT Shew_0065 78618 - 79610 + | formate dehydrogenase, gamma subunit TERM 79 79678 - 79653 - f 100 -12.5 -4.77036 | opp_overlap 79653 TGTTACCATGAAAAA CACCTCACCGG GTTG CCGGCGGGGTG TTTTTTTATGCCTGC TERM 80 79653 - 79678 + F 100 -12.5 -5.64274 | opp_overlap 79653 TGTTACCATGAAAAA CACCTCACCGG GTTG CCGGCGGGGTG TTTTTTTATGCCTGC Shew_0066 79885 - 80250 + | hypothetical protein Shew_0067 80761 - 80252 - | hypothetical protein Shew_0068 80976 - 82355 + | fumarate lyase Shew_0069 83503 - 82400 - | hypothetical protein TERM 81 83658 - 83641 - R 100 -11.3 -4.8048 | opp_overlap 83641 83627 GCGGCATAGCAAAAA GGCATCC CTGA GGATGCC TTTATCGTGTGATGT TERM 82 83641 - 83658 + r 91 -11.3 -4.0348 | opp_overlap 83641, overlap 83627 GCGGCATAGCAAAAA GGCATCC CTGA GGATGCC TTTATCGTGTGATGT Shew_0070 84845 - 83682 - | iron-containing alcohol dehydrogenase Shew_0071 85050 - 85916 + | AraC family transcriptional regulator Shew_0072 86445 - 85924 - | hypothetical protein Shew_0073 86819 - 88162 + | coproporphyrinogen III oxidase TERM 83 88239 - 88217 - T 89 -12 -3.65902 | opp_overlap 88219, overlap 88219 GCTATCCGAGCGAAA GAGGCCGATC ATA GATCGGCCTT TTTTATTGCCGGAGT TERM 84 88219 - 88237 + T 100 -14.6 -5.4505 | opp_overlap 88219 88217 TATCCGAGCGAAAGA GGCCGATC ATA GATCGGCC TTTTTTATTGCCGGA TERM 85 88237 - 88219 - T 100 -14.6 -3.41073 | opp_overlap 88219, overlap 88217 TATCCGAGCGAAAGA GGCCGATC ATA GATCGGCC TTTTTTATTGCCGGA Shew_0075 89097 - 88882 - | hypothetical protein TERM 86 89637 - 89651 + G 73 -12.8 -2.64806 | overlap 89639 TGTCACTATTCGCCG CGCCGC CGA GCGGCG GTTACTATTCGTTGG TERM 87 89639 - 89652 + G 70 -9.5 -3.42147 | overlap 89637 TCACTATTCGCCGCG CCGCC GAGC GGCGG TTACTATTCGTTGGC Shew_0076 89390 - 89677 + | antibiotic biosynthesis monooxygenase Shew_0077 89699 - 90652 + | GCN5-related N-acetyltransferase Shew_0078 90789 - 91649 + | ribokinase-like domain-containing protein TERM 88 91774 - 91790 + T 100 -9.4 -6.06723 | TTTTTCTGTTCTCTC GCCCCA TCTTC TGGGGC TTTTTTTTTGCCCGA TERM 89 91831 - 91814 - T 100 -9.1 -6.06723 | TGCCCGAAAAAAAAA CCCGACC TTTT GGTCAGG GCTTAGGCCGAACGC Shew_0079 93310 - 91853 - | TAP domain-containing protein Shew_0080 94866 - 93574 - | integral membrane sensor signal transduction histidine kinase TERM 90 94340 - 94328 - G 75 -9.1 -4.07568 | GCGCGGGCGCTAAAA TCGCC GTA GGCGA AGGCGATACAGGTCT Shew_0081 95607 - 94873 - | two component transcriptional regulator TERM 91 94916 - 94971 + g 70 -10.3 -3.33998 | gap 1, opp_overlap 94900 94901, overlap 94932 CCCCTGGCCCTGACG GTGATGATGCGCCGGG-GCAGGGCGG GGTTG TCGCCCAGCTTCTTGCGCAGCACCAC TATCTTGTTGTCTAT Shew_0082 96109 - 95660 - | hypothetical protein TERM 92 96652 - 96684 + G 72 -10.5 -3.50869 | overlap 96655 CATCCCGAGTTTGCC CTGGCCATGCAGACC AGC GGCCTGTGTGGCTGG TTCTATCGGGTGATC Shew_0083 96244 - 96936 + | MOSC domain-containing protein Shew_0084 97018 - 97338 + | hypothetical protein TERM 93 97384 - 97355 - T 100 -13.7 -4.07568 | opp_overlap 97362, overlap 97362 GCTTGTTCGGCAAAA TAAAAAAGCCCGC GATT GCGGGCTTTTTTG TGGCTGAAGCACTTT TERM 94 97377 - 97362 - T 100 -11.8 -5.79595 | opp_overlap 97362, overlap 97355 CGGCAAAATAAAAAA GCCCGC GATT GCGGGC TTTTTTGTGGCTGAA TERM 95 97362 - 97377 + T 100 -11.8 -5.28176 | opp_overlap 97362 97355 CGGCAAAATAAAAAA GCCCGC GATT GCGGGC TTTTTTGTGGCTGAA Shew_0085 99330 - 97414 - | methyl-accepting chemotaxis sensory transducer TERM 96 99553 - 99538 - R 100 -11.8 -4.87893 | opp_overlap 99538 AAGCGCAAGTAAAAA CGCGCC CTAA GGCGCG TTTGAATCTGTCTGT TERM 97 99538 - 99553 + r 93 -11.8 -3.75937 | opp_overlap 99538 AAGCGCAAGTAAAAA CGCGCC CTAA GGCGCG TTTGAATCTGTCTGT Shew_0086 101240 - 99591 - | electron-transferring-flavoprotein dehydrogenase TERM 98 101262 - 101280 + H 77 -4.4 -5.06472 | overlap 101264 101270 ACCTCTTTTAGCTTT CCCCCGAT TGA AACGGGTG TTTTATTCTTTGTCT moaA 101556 - 102569 + | molybdenum cofactor biosynthesis protein A Shew_0088 102681 - 103211 + | molybdenum cofactor biosynthesis protein B moaC 103204 - 103680 + | molybdenum cofactor biosynthesis protein C Shew_0090 103730 - 103981 + | molybdopterin converting factor, subunit 1 Shew_0091 103983 - 104450 + | molybdopterin biosynthesis MoaE Shew_0092 104484 - 105308 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Shew_0093 105308 - 105988 + | molybdate ABC transporter, inner membrane subunit Shew_0094 105969 - 107078 + | ABC transporter-related protein Shew_0095 107182 - 107541 + | hypothetical protein TERM 99 107628 - 107644 + F 79 -5.1 -5.1287 | CAAGCCCCTCGTCTA TCCCATT GGT ACTGGGA TTTTTTGCGTGTAAG Shew_0096 107692 - 108228 + | hypothetical protein Shew_0097 108232 - 108909 + | two component transcriptional regulator TERM 100 109069 - 109055 - g 70 -2.8 -4.82901 | opp_overlap 109046, overlap 109057 CTGGCGGCAGAAAAA CTGC GTTATCA GCAG ATGGCGCTCACCCTG Shew_0098 108959 - 110218 + | integral membrane sensor signal transduction histidine kinase TERM 101 110866 - 110851 - g 75 -2.6 -5.02074 | gap 1 GGATGGGGTAAAAAA CCA-GTT GCA AACATGG AGTAAGCCTGAGAAG Shew_0099 110231 - 110905 + | pseudouridine synthase Rlu family protein Shew_0100 110927 - 111094 + | hypothetical protein TERM 102 111131 - 111165 + F 72 -7.9 -3.92542 | overlap 111115 CAAAGTCTTAGTGAG GCTCAGTCTTAGCTT GTTAG AGGCTAAGTCTTAGC TTGTTTGAGACTACA TERM 103 111186 - 111203 + F 100 -10.5 -5.64274 | opp_overlap 111186 TGAGACTACATGATA GCGCGGC CTAG GCTGCGC TTTTTTTATGGCTGA TERM 104 111249 - 111259 + F 75 -4.6 -4.99035 | overlap 111247 TGAACTATGAGTTCA GGTG TCC CGCC TTTTTCTCTGCATCC Shew_0101 111320 - 111721 + | endoribonuclease L-PSP Shew_0102 111823 - 111978 + | hypothetical protein TERM 105 112010 - 112022 + F 70 -6.9 -4.08394 | AATTTATTTTCATTC GTCCC CTT GGGGC TTTTCGCCGACCTCT Shew_0103 112185 - 113408 + | sodium/glutamate symporter TERM 106 113433 - 113460 + T 93 -12.2 -4.0257 | opp_overlap 113440, overlap 113440 CTGAGCATCAAGCAT TAAAAAAGCACC CTAG GGTGCTTTTTTG TTATTGGTTTTTCGC TERM 107 113440 - 113453 + T 100 -8.1 -5.66229 | opp_overlap 113440, overlap 113433 TCAAGCATTAAAAAA GCACC CTAG GGTGC TTTTTTGTTATTGGT TERM 108 113453 - 113440 - T 91 -8.1 -5.2189 | opp_overlap 113433 113440 TCAAGCATTAAAAAA GCACC CTAG GGTGC TTTTTTGTTATTGGT Shew_0104 113712 - 113461 - | hypothetical protein Shew_0105 116325 - 113788 - | peptidase M14, carboxypeptidase A Shew_0106 116533 - 117111 + | putative DNA uptake protein TERM 109 117153 - 117130 - T 76 -11 -3.03443 | opp_overlap 117131 TGATGATTAGATACA GCGGGATGAC TTAG GTCATCCCGT TTTCGTTAGGGTCTT TERM 110 117131 - 117152 + T 100 -14.5 -4.42639 | opp_overlap 117130 GATGATTAGATACAG CGGGATGAC TTAG GTCATCCCG TTTTCGTTAGGGTCT Shew_0107 118491 - 117145 - | MATE efflux family protein TERM 111 118344 - 118305 - G 79 -8.6 -4.49337 | gap 1, opp_overlap 118338 CCAGAATCCATAAAA TCAGGGTGA-TCACCGTTG ACC CGACGGCGACTCCCCCTAA ATAATAGGCGTTACT TERM 112 119302 - 119288 - g 71 -11.4 -3.1855 | CCGCGCAATACCCAA CTGCCC CTG GGGCAG TGGCGGCCCGAGATG Shew_0108 118514 - 119560 + | polysaccharide deacetylase Shew_0109 120665 - 119619 - | response regulator receiver modulated CheB methylesterase Shew_0110 121560 - 120694 - | MCP methyltransferase, CheR-type Shew_0111 124227 - 121633 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 113 122266 - 122280 + g 73 -12.8 -2.62026 | overlap 122265 122268 CTGCTCCACCACCTT GCCGCC GTG GGCGGC CTTAGTGTTGGCCTC TERM 114 122338 - 122356 + g 71 -11 -3.10796 | overlap 122340 GTTTTGCGCGCTCTG GGTGACGG TTG CCGTCATC TCTTCCATGCTGGAG Shew_0112 124807 - 124250 - | CheW protein Shew_0113 126896 - 124836 - | CheA signal transduction histidine kinase Shew_0114 127280 - 126918 - | response regulator receiver protein Shew_0115 127576 - 127277 - | hypothetical protein TERM 115 127701 - 127679 - R 100 -14.9 -3.90291 | AGTTTTTTAACTAAA TGGGCTCCC AGGAG GGGAGCCCA TTAGCGGTGATGAGA Shew_0116 128375 - 127740 - | electron transport protein SCO1/SenC Shew_0117 129282 - 128380 - | protoheme IX farnesyltransferase Shew_0118 130278 - 129295 - | cytochrome oxidase assembly Shew_0119 130829 - 130278 - | hypothetical protein Shew_0120 131757 - 131002 - | hypothetical protein TERM 116 131740 - 131727 - G 75 -2.3 -5.09245 | CTAAAACGAGAAAAA TCGTG CCAC CGCGA ACCGTGGGAGCCTTC Shew_0121 131798 - 131974 + | hypothetical protein Shew_0122 132865 - 131990 - | cytochrome c oxidase, subunit III Shew_0123 133431 - 132862 - | cytochrome C oxidase assembly protein Shew_0124 135043 - 133433 - | cytochrome-c oxidase Shew_0125 136618 - 135053 - | cytochrome c oxidase, subunit II TERM 117 136973 - 136988 + r 81 -11.8 -2.98942 | opp_overlap 136973 AAACAGACACAAAAA CGCCCC TTGC GGGGCG TCTGTATGGAAAGGT TERM 118 136988 - 136973 - R 100 -11.8 -5.1104 | opp_overlap 136973 AAACAGACACAAAAA CGCCCC TTGC GGGGCG TCTGTATGGAAAGGT Shew_0126 137526 - 137017 - | hypothetical protein Shew_0127 138140 - 137523 - | LexA repressor Shew_0128 138933 - 138259 - | HAD family hydrolase TERM 119 139422 - 139395 - g 71 -11.4 -3.13522 | opp_overlap 139399 139401, overlap 139393 ACTTTGCCAGCAAGA TGCAGATCTTCG TCGC CGAAGATCTGTA TGAGAGTCGATTGCA nudE 139031 - 139576 + | ADP-ribose diphosphatase NudE Shew_0130 139630 - 140442 + | 3'(2'),5'-bisphosphate nucleotidase Shew_0131 140435 - 140890 + | GCN5-related N-acetyltransferase Shew_0132 140998 - 141654 + | TetR family transcriptional regulator Shew_0133 141645 - 143507 + | phospholipid/glycerol acyltransferase Shew_0134 144673 - 143555 - | tRNA 2-selenouridine synthase Shew_0135 145716 - 144673 - | selenide, water dikinase TERM 120 145847 - 145863 + r 100 -13.7 -4.59773 | opp_overlap 145847, overlap 145861 TCAGGGTGTAAAAAA GCCACCC CTG GGGTGGC TTTTTCGAGATCGGA TERM 121 145863 - 145847 - R 100 -13.7 -5.02074 | opp_overlap 145847 145861 TCAGGGTGTAAAAAA GCCACCC CTG GGGTGGC TTTTTCGAGATCGGA Shew_0136 146985 - 145879 - | stearoyl-CoA 9-desaturase TERM 122 146331 - 146341 + g 86 -6.8 -5.07275 | CCAGCACGCCGTTGT CACG CGC CGTG TTTTTGTCTGTGTAG TERM 123 146528 - 146546 + g 75 -6 -4.58466 | opp_overlap 146528 146527 AGCGGCAGATAATAT TTGTGCTG CCA CATCACAA TTTTCTCATTCTGCA TERM 124 146796 - 146768 - G 70 -3 -4.81359 | AAGGCAAACAGAAAA CGTACCGACCAG TGTGC CTTGTAGGTGCG ATGTGACCAGAGCCT TERM 125 147181 - 147159 - g 100 -3.2 -5.95286 | opp_overlap 147158 147159 147173 147174 AGCAAAAAGAAAAAA CGCGTCGCGC CTT GGTCGATGCG GCATTTAATCAATTA Shew_0137 147125 - 147742 + | DNA-binding transcriptional repressor FabR TERM 126 147772 - 147800 + T 85 -11.2 -3.48766 | gap 1, opp_overlap 147772 147779, overlap 147772 147779 GCGCAAGAGAGCAAC G-AAAAAAGGGCC ATCG GGCCCTTTTTTAC TGTTTGACTTATAGC TERM 127 147772 - 147799 + T 77 -11.4 -2.68778 | opp_overlap 147772 147779, overlap 147772 147779 GCGCAAGAGAGCAAC GAAAAAAGGGCC ATCG GGCCCTTTTTTA CTGTTTGACTTATAG TERM 128 147799 - 147772 - T 77 -11.4 -2.62175 | opp_overlap 147772 147772 147779, overlap 147779 GCGCAAGAGAGCAAC GAAAAAAGGGCC ATCG GGCCCTTTTTTA CTGTTTGACTTATAG TERM 129 147792 - 147779 - T 100 -9.5 -5.31059 | opp_overlap 147779 147772 147772, overlap 147772 AGAGCAACGAAAAAA GGGCC ATCG GGCCC TTTTTTACTGTTTGA TERM 130 147779 - 147792 + T 100 -9.5 -5.32699 | opp_overlap 147772 147779, overlap 147772 147772 AGAGCAACGAAAAAA GGGCC ATCG GGCCC TTTTTTACTGTTTGA Shew_0138 148920 - 147823 - | tRNA (uracil-5-)-methyltransferase Shew_0139 149128 - 149928 + | glutamate racemase Shew_0140 150455 - 149997 - | RNP-1-like RNA-binding protein TERM 131 150656 - 150642 - H 70 -5.7 -4.31379 | overlap 150633 ACGAAGCGATTAAAA GATCG ACTTG CGATC GCCGATCCTTGAAAA TERM 132 152973 - 152941 - H 75 -10.8 -2.88663 | opp_overlap 152942, overlap 152948 AGTTATGGTTAGAGA TGCCAAAGATAAAT GCAGA ATTTATCTTTGGCT TTTTTAAGCCCGCTC TERM 133 152942 - 152972 + H 100 -14.3 -5.00884 | opp_overlap 152941 152948 GTTATGGTTAGAGAT GCCAAAGATAAAT GCAGA ATTTATCTTTGGC TTTTTTAAGCCCGCT TERM 134 153633 - 153621 - H 82 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 135 154935 - 154924 - H 71 -4.4 -4.7254 | ACTGTTTATCAAAAA CACA GCAC TGTG CAAAATCGCAAGATG TERM 136 156297 - 156319 + H 100 -14.2 -5.37593 | opp_overlap 156297 CTAATAAACGATAAA TCCCCAGCAC CTA GTGTTGGGGA TTTTTTCGTTTAACA TERM 137 156319 - 156297 - H 95 -12 -4.20981 | opp_overlap 156297 CTAATAAACGATAAA TCCCCAGCAC CTA GTGTTGGGGA TTTTTTCGTTTAACA TERM 138 156662 - 156684 + H 83 -6.2 -5.04601 | opp_overlap 156662 CTAATAAAGCAAAAA GCCCTAGCGT TTT AGGCTAGCGC TTTTTGCTTTCTACG TERM 139 156684 - 156662 - H 83 -6.2 -5.09521 | opp_overlap 156662 CTAATAAAGCAAAAA GCCCTAGCGT TTT AGGCTAGCGC TTTTTGCTTTCTACG TERM 140 157664 - 157650 - g 70 -5.6 -4.42062 | TAGCGGTGAAATAAA GCGGCT AAA AGGCGC TGAATGCGAGTTTGC Shew_0141 157198 - 158238 + | UDP-N-acetylenolpyruvoylglucosamine reductase Shew_0142 158231 - 159190 + | biotin--protein ligase TERM 141 159215 - 159196 - T 100 -13.6 -4.77165 | opp_overlap 159196 TCCTGCATAACAAAA CGGCCATC TTTT GATGGCCG TTGATCTATCTATAG TERM 142 159196 - 159215 + T 100 -13.6 -3.36655 | opp_overlap 159196 TCCTGCATAACAAAA CGGCCATC TTTT GATGGCCG TTGATCTATCTATAG Shew_0143 160204 - 159254 - | pantothenate kinase TERM 143 160502 - 160515 + H 70 -6.7 -4.03413 | CCCGAGTTCGACTCT TGGTG CCGG CACCA TTTCTCTGGAGGGGT TERM 144 160829 - 160852 + H 95 -3.1 -5.62045 | overlap 160831 TCTTAATTAAATCGA TTCGATGAC ATAATA GGCATCGGA TTTTTTGTTGTATGT Shew_0144 160907 - 162091 + | elongation factor Tu TERM 145 162116 - 162145 + F 100 -12.3 -4.11216 | opp_overlap 162123, overlap 162123 ATTTTACAAACACAC TGAAAAAGGCAGC TTAG GCTGCCTTTTTTG TTTTAGAACTCCCAG TERM 146 162138 - 162123 - f 91 -10.4 -4.75356 | opp_overlap 162116 162123 AAACACACTGAAAAA GGCAGC TTAG GCTGCC TTTTTTGTTTTAGAA TERM 147 162123 - 162138 + F 100 -10.4 -5.79595 | opp_overlap 162123, overlap 162116 AAACACACTGAAAAA GGCAGC TTAG GCTGCC TTTTTTGTTTTAGAA TERM 148 162303 - 162317 + F 74 -2.1 -5.24129 | gap 1 TATGGACTGGGCAAT CTCAGC ACTT GC-GAG TTTTTTATGCCCGGC TERM 149 162410 - 162394 - g 71 -6.5 -4.34811 | opp_overlap 162393 162388, overlap 162387 AACAAATACTGAAAA CCAGGGA AGC TCTCTGG ATATCGTTAAATGGG secE 162374 - 162745 + | preprotein translocase subunit SecE Shew_0146 162755 - 163297 + | NusG antitermination factor TERM 150 163356 - 163326 - f 100 -17 -3.63266 | opp_overlap 163326 AAAACGTATTGGAAA TGGGTGCGGATTTT TGT ATAATCCGCACCCA TTATTTTCGGGGAGC TERM 151 163326 - 163356 + F 100 -17 -4.17048 | opp_overlap 163326 AAAACGTATTGGAAA TGGGTGCGGATTTT TGT ATAATCCGCACCCA TTATTTTCGGGGAGC rplK 163424 - 163852 + | 50S ribosomal protein L11 TERM 152 164437 - 164420 - g 74 -2.7 -4.94058 | opp_overlap 164426 TCAACTGAAAGAAAA CCTAG ACGCTCTG CTAGG CGCGCTTATCAAAGC Shew_0148 163857 - 164558 + | ribosomal protein L1 TERM 153 164576 - 164612 + F 81 -12.4 -2.52543 | opp_overlap 164579, overlap 164579 TCTTAGCTTGTTTTA CAAGGTGCGGGGATTA GTCTA TAATGCGCGCACCTTG TGGGTTGAGGACCAT rplJ 164826 - 165323 + | 50S ribosomal protein L10 Shew_0150 165377 - 165745 + | ribosomal protein L7/L12 TERM 154 165784 - 165765 - f 73 -9.2 -3.42354 | TACTCTAACTTACAA CCTCCCGA GTGA TCGGGCGG AGGCTGGCGGTTTTT TERM 155 165786 - 165811 + F 100 -13.3 -5.07567 | GAGTGATCGGGCGGA GGCTGGCGGTT TTTT AACCGTCGGCC TTTTTTGCGCTGTAA TERM 156 168167 - 168183 + G 71 -12.3 -2.75481 | TTACGTTGACTATGT CGATGCG AGC CGCATCG TGGTTAAGGTTAACG Shew_0151 165984 - 170015 + | DNA-directed RNA polymerase, beta subunit TERM 157 170072 - 170047 - f 82 -8.9 -4.15788 | opp_overlap 170046 170048, overlap 170048 AAGTTTGGCAATAAA CGGTGCTCTGC GAGA GCAGGGCACCT GGTTTAACTCCTTCA TERM 158 170071 - 170048 - f 83 -12.4 -3.08991 | opp_overlap 170046 170048, overlap 170047 AGTTTGGCAATAAAC GGTGCTCTGC GAGA GCAGGGCACC TGGTTTAACTCCTTC TERM 159 170048 - 170071 + F 89 -14.6 -2.9583 | opp_overlap 170048 170047, overlap 170046 AGTTTGGCAATAAAC GGTGCTCTGC GAGA GCAGGGCACC TGGTTTAACTCCTTC TERM 160 170240 - 170261 + G 70 -5.1 -4.38927 | CCATCAACTACCGTA CTTTCAAGC CTGA GCGTGAAGG TTTGTTCTGTGCGCG Shew_0152 170098 - 174312 + | DNA-directed RNA polymerase subunit beta' TERM 161 174359 - 174345 - f 100 -11.4 -5.08169 | opp_overlap 174345 174357 ATAGATTGTAAAAAA GGCACC TCG GGTGCC TTTTTTTTACTTAAA TERM 162 174345 - 174359 + F 100 -11.4 -5.95166 | opp_overlap 174345, overlap 174357 ATAGATTGTAAAAAA GGCACC TCG GGTGCC TTTTTTTTACTTAAA rpsL 174503 - 174877 + | 30S ribosomal protein S12 Shew_0154 174958 - 175428 + | 30S ribosomal protein S7 TERM 163 175432 - 175459 + F 95 -12 -4.19817 | overlap 175434 TACCGCTGGTAATCT TTTGGTGCAGGC GATT GCCTGCACCATG TTTTACATCACTAAG TERM 164 175434 - 175457 + F 100 -16.8 -3.6993 | overlap 175432 CCGCTGGTAATCTTT TGGTGCAGGC GATT GCCTGCACCA TGTTTTACATCACTA Shew_0155 175504 - 177600 + | elongation factor G TERM 165 177637 - 177655 + F 93 -11.8 -3.85698 | opp_overlap 177631 ATAATTGAATGCTAT TACTCAGC AAG GCTGAGTA TTTCTGAAAAGAAAG Shew_0156 177680 - 178864 + | elongation factor Tu TERM 166 178921 - 178886 - f 88 -12 -3.53733 | opp_overlap 178896, overlap 178889 178896 TTGATTTTACAAACA CACTGAAAAAGGCAGC TTAG GCTGCCTTTTTTATTG CCGGCGATTTGTTGG TERM 167 178918 - 178889 - f 81 -12.3 -2.60065 | opp_overlap 178896, overlap 178886 178896 ATTTTACAAACACAC TGAAAAAGGCAGC TTAG GCTGCCTTTTTTA TTGCCGGCGATTTGT TERM 168 178911 - 178896 - f 91 -10.4 -4.75356 | opp_overlap 178896, overlap 178889 178886 AAACACACTGAAAAA GGCAGC TTAG GCTGCC TTTTTTATTGCCGGC TERM 169 178896 - 178911 + F 100 -10.4 -5.4505 | opp_overlap 178896 178889 178886 AAACACACTGAAAAA GGCAGC TTAG GCTGCC TTTTTTATTGCCGGC TERM 170 179138 - 179120 - f 70 -10.3 -2.64356 | overlap 179119 CGTAAAATAATACAG CGACTCC GATTT GGAGTCG AACGGTTAAATCATC TERM 171 179152 - 179192 + F 79 -2.7 -5.4251 | gap 2, opp_overlap 179152, overlap 179155 CGAACGGTTAAATCA TCTCGCTCT-GCTT-TTCC AGTAA GGAAGAAGCTAGAGGGTGA TTTTTTATGTGTCCA rpsJ 179226 - 179537 + | 30S ribosomal protein S10 rplC 179565 - 180203 + | 50S ribosomal protein L3 rplD 180220 - 180825 + | 50S ribosomal protein L4 rplW 180822 - 181121 + | 50S ribosomal protein L23 rplB 181138 - 181965 + | 50S ribosomal protein L2 rpsS 181977 - 182255 + | 30S ribosomal protein S19 rplV 182271 - 182603 + | 50S ribosomal protein L22 rpsC 182613 - 183302 + | 30S ribosomal protein S3 rplP 183314 - 183724 + | 50S ribosomal protein L16 Shew_0166 183724 - 183915 + | 50S ribosomal protein L29 Shew_0167 183915 - 184163 + | ribosomal protein S17 TERM 172 184174 - 184158 - f 71 -3.7 -4.75219 | opp_overlap 184159, overlap 184159 GAAGTAGTAACAAAA GCCTAAT TTA ATTAGGT GATTAGCGAAACGGC TERM 173 184186 - 184206 + F 100 -8.9 -5.65496 | opp_overlap 184186 AGGTGATTAGCGAAA CGGCTCCTA GAT TTGGGGCCG TTTTTATTTTTAATA rplN 184343 - 184711 + | 50S ribosomal protein L14 rplX 184723 - 185037 + | 50S ribosomal protein L24 rplE 185050 - 185589 + | 50S ribosomal protein L5 rpsN 185600 - 185905 + | 30S ribosomal protein S14 rpsH 185929 - 186321 + | 30S ribosomal protein S8 rplF 186332 - 186862 + | 50S ribosomal protein L6 TERM 174 186926 - 186886 - g 74 -4.8 -4.79955 | gap 2, overlap 186888 ATATGGATAAGAAAA CATCTCGCTTACGCCGCGCG ACT CGCGCC-CGTAAG-AAGATC CAAGAGCTGGGCGTT rplR 186873 - 187223 + | 50S ribosomal protein L18 rpsE 187237 - 187740 + | 30S ribosomal protein S5 Shew_0176 187746 - 187928 + | ribosomal protein L30 rplO 187932 - 188366 + | 50S ribosomal protein L15 TERM 175 189719 - 189670 - g 71 -6.5 -4.24342 | gap 1, opp_overlap 189670 189688 TCTGTGATGAAGAAA GCTAACCTAGTGAATAAAGCGAAC TTA GATCGCTTTGGTCGCTAAGT-AGC TTTACGGAGTGATGA secY 188374 - 189714 + | preprotein translocase subunit SecY rpmJ 189736 - 189849 + | 50S ribosomal protein L36 TERM 176 189889 - 189853 - f 100 -17.5 -4.66833 | opp_overlap 189854 189855, overlap 189854 189855 CGTCAAGGCTAAAAA CTTTTTGACCAGCTCAG TTT CTGAGCTGGTCAAAATA TTATTTGCAAAATCG TERM 177 189854 - 189889 + F 100 -17.2 -3.91716 | gap 1, opp_overlap 189854 189853 189855, overlap 189855 GTCAAGGCTAAAAAC T-TTTTGACCAGCTCAG TTT CTGAGCTGGTCAAAATA TTATTTGCAAAATCG TERM 178 189888 - 189854 - f 100 -18.8 -3.39618 | opp_overlap 189854 189855, overlap 189853 189855 GTCAAGGCTAAAAAC TTTTTGACCAGCTCAG TTT CTGAGCTGGTCAAAAT ATTATTTGCAAAATC TERM 179 189887 - 189855 - f 100 -22.3 -2.63289 | opp_overlap 189855 189854, overlap 189854 189853 TCAAGGCTAAAAACT TTTTGACCAGCTCAG TTT CTGAGCTGGTCAAAA TATTATTTGCAAAAT TERM 180 189855 - 189887 + F 100 -22.3 -3.54755 | opp_overlap 189854 189853 189855, overlap 189854 TCAAGGCTAAAAACT TTTTGACCAGCTCAG TTT CTGAGCTGGTCAAAA TATTATTTGCAAAAT rpsM 189967 - 190323 + | 30S ribosomal protein S13 Shew_0181 190341 - 190733 + | 30S ribosomal protein S11 rpsD 190770 - 191390 + | 30S ribosomal protein S4 TERM 181 192385 - 192371 - g 77 -7.8 -4.3739 | opp_overlap 192371 TATGCGTCTAGAAAA CTGGCC TCC AGCCAG TTTAGCAGACGACCT Shew_0183 191415 - 192404 + | DNA-directed RNA polymerase subunit alpha rplQ 192444 - 192836 + | 50S ribosomal protein L17 TERM 182 192874 - 192858 - T 100 -15.1 -4.62336 | opp_overlap 192858 AGTTCATTGTAAAAA GCCGGGC ATT GCCCGGC TTTTTTATTGCTTCA TERM 183 192858 - 192874 + T 100 -15.1 -5.5604 | opp_overlap 192858 AGTTCATTGTAAAAA GCCGGGC ATT GCCCGGC TTTTTTATTGCTTCA Shew_0185 193870 - 192893 - | hypothetical protein TERM 184 193960 - 193975 + r 82 -10.4 -3.92659 | opp_overlap 193960, overlap 193954 ACAGGCAATAAAAAA GGCCTC AATT GAGGCC TTTAGCTTTTCACAC TERM 185 193975 - 193960 - R 100 -10.4 -5.49234 | opp_overlap 193960 193954 ACAGGCAATAAAAAA GGCCTC AATT GAGGCC TTTAGCTTTTCACAC Shew_0186 194490 - 194005 - | cytochrome c-type biogenesis protein CcmE Shew_0187 194687 - 194487 - | Heme exporter protein D (CcmD) Shew_0188 195433 - 194687 - | heme exporter protein CcmC Shew_0189 196121 - 195435 - | heme exporter protein CcmB Shew_0190 196783 - 196133 - | cytochrome c biogenesis protein CcmA TERM 186 196834 - 196845 + H 70 -7.2 -3.96093 | opp_overlap 196834 196833 196830 CGATATTAACATAAT CCCC TTGA GGGG TTTAGTCTTGCTATC Shew_0191 197116 - 197409 + | cytochrome c, class I TERM 187 197446 - 197429 - T 82 -6.9 -5.00884 | opp_overlap 197430, overlap 197430 ACTTCGTTGAAAAAA GCCGACC TTAT GGTCGGT TTTTTTATGCCTGTC TERM 188 197445 - 197430 - T 78 -10.4 -3.60048 | opp_overlap 197430, overlap 197429 CTTCGTTGAAAAAAG CCGACC TTAT GGTCGG TTTTTTTATGCCTGT TERM 189 197430 - 197445 + T 100 -10.4 -5.65177 | opp_overlap 197430 197429 CTTCGTTGAAAAAAG CCGACC TTAT GGTCGG TTTTTTTATGCCTGT TERM 190 197501 - 197482 - T 70 -6.4 -4.16016 | GTAGTTTTTAATAAA GAGGCTCT CGGA AGAGGCTC TCGCGATCAAGATAG TERM 191 197547 - 197532 - T 100 -11.8 -5.5112 | opp_overlap 197532 GTGAGCAATAAAAAA GCCGGC TAAT GCCGGC TTTTCTGTGCGATAC TERM 192 197532 - 197547 + T 100 -11.8 -4.54047 | opp_overlap 197532 GTGAGCAATAAAAAA GCCGGC TAAT GCCGGC TTTTCTGTGCGATAC Shew_0192 198851 - 197601 - | TPR repeat-containing protein TERM 193 199037 - 199012 - H 74 -5.5 -4.59773 | TTCTATTTTCAAAAA TTGGCTGAAAC TTAA GTTTCAAACAA GGGTCAGAGCATAAA Shew_0193 199263 - 201239 + | cytochrome c-type biogenesis protein CcmF TERM 194 201389 - 201368 - g 85 -14.5 -3.4072 | opp_overlap 201373, overlap 201373 GACTCTGCACTAGAA GGAAAGCCG ATAC CGGCTTTCC AACTGCAAAAGCTTG Shew_0194 201257 - 201814 + | periplasmic protein thiol--disulphide oxidoreductase DsbE Shew_0195 201814 - 202293 + | cytochrome C biogenesis protein Shew_0196 202290 - 202877 + | redoxin domain-containing protein TERM 195 202898 - 202880 - T 73 -5.2 -4.60746 | overlap 202882 TCAAAAACAGTAAAA CACGGCAA TAT TGGCCGTA AATCATACGAAAAAG TERM 196 202931 - 202945 + T 100 -5.7 -5.93809 | opp_overlap 202913 202931 CGCAATTGCCTAAAA GATCG GCATG CGATC TTTTTTTTGTAAAAA TERM 197 203151 - 203141 - T 75 -4.6 -5.01732 | AATCTTTTGAAAAAA GCGC TTG ACGC CGACAGGGAGAAGCG TERM 198 205679 - 205667 - T 82 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 199 206981 - 206970 - T 71 -4.4 -4.7254 | ACTGTTTATCAAAAA CACA GCAC TGTG CAAAATCGCAAGATG TERM 200 208427 - 208462 + T 100 -15.6 -3.19289 | opp_overlap 208434, overlap 208434 CTCCGCCAACATTAA GATGAAAGCCCTAGCA GCAA TGCTAGGGCTTTTTTC GTTTCTGTCTTTTCA TERM 201 208434 - 208455 + T 100 -14.5 -5.4387 | opp_overlap 208434, overlap 208427 AACATTAAGATGAAA GCCCTAGCA GCAA TGCTAGGGC TTTTTTCGTTTCTGT TERM 202 208455 - 208434 - T 100 -14.5 -3.96696 | opp_overlap 208434 208427 AACATTAAGATGAAA GCCCTAGCA GCAA TGCTAGGGC TTTTTTCGTTTCTGT Shew_0197 209021 - 208521 - | hypothetical protein Shew_0198 209239 - 210513 + | competence/damage-inducible protein CinA TERM 203 210546 - 210520 - T 82 -12.4 -2.92255 | opp_overlap 210513 210523, overlap 210523 GCAAGATAGACTAGA TAAGGCGCCA AGCATAA TGGCGCCTTA AATAGAGTTGATTAT TERM 204 210543 - 210523 - T 77 -9.7 -3.5951 | opp_overlap 210523 210513, overlap 210520 AGATAGACTAGATAA GGCGCCA AGCATAA TGGCGCC TTAAATAGAGTTGAT TERM 205 210523 - 210543 + T 71 -9.7 -3.08173 | opp_overlap 210520 210523, overlap 210513 AGATAGACTAGATAA GGCGCCA AGCATAA TGGCGCC TTAAATAGAGTTGAT Shew_0199 211110 - 210571 - | hypothetical protein Shew_0200 213746 - 211110 - | phosphoenolpyruvate carboxylase TERM 206 212040 - 212060 + g 76 -5.5 -4.7254 | GAGCTTGATGTCTGC CTGGTTA CAGACCT TAACCAG TTTTTCCTGCGCACT Shew_0201 215024 - 213864 - | acetylornithine deacetylase argC 215298 - 216278 + | N-acetyl-gamma-glutamyl-phosphate reductase Shew_0203 216307 - 217092 + | acetylglutamate kinase Shew_0204 217135 - 218040 + | ornithine carbamoyltransferase Shew_0205 218094 - 219317 + | argininosuccinate synthase TERM 207 219356 - 219332 - f 86 -13 -3.09834 | opp_overlap 219332 219336, overlap 219336 GAGTCGACTAGCTAA TAAAGGAGCG GCGAA CGCTCCTTTA TTTTAAGAGCAGATT TERM 208 219332 - 219356 + F 100 -13 -4.08064 | opp_overlap 219332 219336, overlap 219336 GAGTCGACTAGCTAA TAAAGGAGCG GCGAA CGCTCCTTTA TTTTAAGAGCAGATT TERM 209 219352 - 219336 - f 84 -9.4 -4.21974 | opp_overlap 219332 219336, overlap 219332 CGACTAGCTAATAAA GGAGCG GCGAA CGCTCC TTTATTTTAAGAGCA TERM 210 219336 - 219352 + F 91 -9.4 -4.64861 | opp_overlap 219336 219332, overlap 219332 CGACTAGCTAATAAA GGAGCG GCGAA CGCTCC TTTATTTTAAGAGCA Shew_0206 219411 - 220772 + | argininosuccinate lyase TERM 211 220830 - 220801 - T 74 -10.9 -2.60244 | opp_overlap 220809, overlap 220809 TGTCTAATCAATCGA TTAAAAAACCTGC AATC GCAGGTTTTTTTA CATCTAAAGTTTTAT TERM 212 220822 - 220809 - T 91 -8.1 -5.18357 | opp_overlap 220809, overlap 220801 CAATCGATTAAAAAA CCTGC AATC GCAGG TTTTTTTACATCTAA TERM 213 220809 - 220822 + T 100 -8.1 -5.50499 | opp_overlap 220809 220801 CAATCGATTAAAAAA CCTGC AATC GCAGG TTTTTTTACATCTAA Shew_0207 223529 - 220944 - | 1A family penicillin-binding protein TERM 214 222456 - 222479 + g 70 -12.4 -2.71681 | GCTCTGCTCGGCAAC CTCGAGCACG GCGG CGGGCTCGAG TCCTTGGAAGCCTTG Shew_0208 223714 - 224793 + | type IV pilus assembly protein PilM Shew_0209 224781 - 225362 + | fimbrial assembly family protein TERM 215 225948 - 225934 - g 74 -11.4 -3.35046 | overlap 225932 CTATCGTTTCAAAGA GGGAGC CCA GCTCCC GAAAGATAATGCGGC Shew_0210 225359 - 225982 + | pilus assembly protein, PilO Shew_0211 225979 - 226494 + | pilus assembly protein, PilQ Shew_0212 226517 - 228568 + | type IV pilus secretin PilQ TERM 216 228610 - 228591 - f 100 -13.6 -3.89822 | opp_overlap 228591 CACCTATCCGATAAA GCCAGCGT ATGA ACGCTGGC TTTTTTATGCCTGAG TERM 217 228591 - 228610 + F 100 -13.6 -5.28176 | opp_overlap 228591 CACCTATCCGATAAA GCCAGCGT ATGA ACGCTGGC TTTTTTATGCCTGAG Shew_0213 228784 - 229299 + | shikimate kinase I TERM 218 229546 - 229561 + G 71 -4.7 -4.67353 | CAATACAAGACACTG TCGCA GATGGA TGCGA TTTTTACCTCGCTGC TERM 219 229649 - 229679 + G 71 -4.7 -4.65916 | gap 1, overlap 229653 GCGACATGACGGGCT TTGCCGCCGC-TTG TTAT CAACGCGGTGTCGA TTTTATTCAGATCCC Shew_0214 229315 - 230391 + | 3-dehydroquinate synthase Shew_0215 230408 - 231943 + | sporulation domain-containing protein Shew_0216 231996 - 232835 + | DNA adenine methylase Shew_0217 233083 - 232910 - | hypothetical protein TERM 220 232994 - 233024 + g 70 -5.2 -4.41956 | overlap 232996 CACTATAAAGGGCAC CGGCGAGCGGGACT GAA AGTCGCGAACGCGG TTTTGCTCTGTCTGT Shew_0218 233436 - 233092 - | hypothetical protein TERM 221 233376 - 233399 + g 70 -11 -2.95787 | opp_overlap 233373, overlap 233375 AGGCAACAACAGCGG CGGTGACGGT AAAT ACCGTTGCCG ATTTCATCTTGGCTG Shew_0219 233648 - 234322 + | ribulose-phosphate 3-epimerase TERM 222 234432 - 234412 - g 71 -11.1 -3.05384 | opp_overlap 234417 GCCGCCGCCACCCAA GGCATGCTC GCC GAGCTTGCC TTGCCCCTGTGCGAC TERM 223 234550 - 234562 + G 70 -10.5 -3.34894 | overlap 234548 CAGGCCTATATCGAT GCGGC AAT GCCGC TGTTTAGCAAGCATT TERM 224 234942 - 234955 + G 77 -9.5 -3.88583 | opp_overlap 234932 AGATATTGGGCTCAG CGGCC CGAC GGCCG TTTGTAACACATTTA Shew_0220 234325 - 235020 + | phosphoglycolate phosphatase Shew_0221 235026 - 236024 + | tryptophanyl-tRNA synthetase TERM 225 236063 - 236034 - T 100 -13.7 -4.2528 | opp_overlap 236041, overlap 236039 CTCTAATCGAACAAA TAAAACAGCCGGC ATCA GCCGGCTTTTTTA ATGGATAAATATTAA TERM 226 236058 - 236039 - T 93 -9.2 -5.10665 | opp_overlap 236041, overlap 236034 ATCGAACAAATAAAA CAGCCGGC ATCA GCCGGCTT TTTTAATGGATAAAT TERM 227 236041 - 236056 + T 100 -11.8 -5.1675 | opp_overlap 236039 236034 CGAACAAATAAAACA GCCGGC ATCA GCCGGC TTTTTTAATGGATAA Shew_0222 236964 - 236089 - | LysR family transcriptional regulator Shew_0223 237090 - 237959 + | hypothetical protein TERM 228 237963 - 237987 + T 78 -10 -3.63627 | opp_overlap 237945 AGGCTCGCCTAGGCG CAGCAAGCAC CCGGC GTGCTAGCTG TTTGGCGTATCGAAG Shew_0224 238550 - 237981 - | transport-associated Shew_0225 239140 - 238547 - | phosphoheptose isomerase Shew_0226 239553 - 239209 - | hypothetical protein Shew_0227 241454 - 239550 - | LppC family lipoprotein Shew_0228 241543 - 242385 + | uroporphyrin-III C/tetrapyrrole methyltransferase TERM 229 242789 - 242777 - T 71 -7.7 -3.7732 | GGCCTAGATGAATAA CTGTC CAC GACAG GACCCGGCTTATCGG TERM 230 242851 - 242825 - T 90 -12.3 -3.28003 | opp_overlap 242825 TCAACACATTAGTAA GGCCCGTTTGT TTATG ACAGACGGGCC TTTTCTTTTTTACAG TERM 231 242825 - 242851 + T 100 -15.2 -5.42198 | opp_overlap 242825 TCAACACATTAGTAA GGCCCGTTTGTT TAT GACAGACGGGCC TTTTCTTTTTTACAG Shew_0229 243706 - 242897 - | extracellular solute-binding protein Shew_0230 245485 - 243776 - | hypothetical protein TERM 232 245379 - 245389 + g 73 -8.2 -4.08974 | TGAGTCGATGCATCT GCGG CTA CCGC TTTATCTGATGCGCT TERM 233 245655 - 245625 - R 71 -8.3 -3.54424 | TTTTACTTGCGCAAA TCCTGATGCAAGC GTCTA GACCGCATCAGGA CTTGGCTGGTCAATT Shew_0231 246940 - 245669 - | hypothetical protein TERM 234 247168 - 247186 + G 83 -8.8 -4.64766 | ATTTTATATTGCTCT CACGGCCA TCA TGGCGGTG TTTTTCACCTATCGC Shew_0232 247133 - 247528 + | hypothetical protein Shew_0233 247659 - 250001 + | hypothetical protein TERM 235 250051 - 250030 - f 74 -2.2 -5.25656 | opp_overlap 250030, overlap 250019 AAAACGATGAAAAAA GGGGAGTA TCTAAC CACTTCCC TTTTTTATTGCACAG TERM 236 250030 - 250051 + F 83 -3.7 -5.4505 | opp_overlap 250030 250019 AAAACGATGAAAAAA GGGGAGT ATCTAACC ACTTCCC TTTTTTATTGCACAG Shew_0234 250076 - 250435 + | hypothetical protein Shew_0235 251399 - 250449 - | isochorismatase hydrolase TERM 237 252421 - 252399 - g 77 -11.3 -3.59262 | overlap 252417 GTGGAGAGGTTGAAA GAGGCCTTC AGGCA GAAGGCCCC GGTAAGCGGCTGAGC Shew_0236 251517 - 252434 + | LysR family transcriptional regulator Shew_0237 254343 - 252445 - | methyl-accepting chemotaxis sensory transducer TERM 238 253652 - 253667 + g 70 -5.4 -4.4648 | TATTCCTGCATCACC TCGTCG CTAC CGATGA TTTTCTGCTGCACCT TERM 239 254396 - 254373 - R 93 -15.4 -3.0263 | opp_overlap 254376, overlap 254376 ATGAGGTGTGGAATA GAAGAGGCCA GAGA TGGCCTCTTC TGGAGGGAGCCTGGT TERM 240 254376 - 254393 + r 83 -11.3 -3.28791 | opp_overlap 254373 254376 AGGTGTGGAATAGAA GAGGCCA GAGA TGGCCTC TTCTGGAGGGAGCCT TERM 241 254393 - 254376 - R 87 -11.3 -3.65991 | opp_overlap 254376, overlap 254373 AGGTGTGGAATAGAA GAGGCCA GAGA TGGCCTC TTCTGGAGGGAGCCT Shew_0238 255507 - 254419 - | porin TERM 242 255636 - 255613 - R 89 -14.6 -3.11966 | opp_overlap 255612 255611 255610, overlap 255611 AAAAGGGAGTTAATA GGCCCATGAC ATCT GCCATGGGCC GGGTTTTGGTTAAAC Shew_0239 256626 - 255646 - | formate dehydrogenase, gamma subunit Shew_0240 257305 - 256691 - | cytoplasmic chaperone TorD family protein Shew_0241 257850 - 257305 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shew_0242 260074 - 257861 - | molydopterin dinucleotide-binding region TERM 243 259962 - 259972 + g 82 -8.2 -4.62336 | TTCAAGAGTTTGTCG GGCG CGC CGCC TTTTTCGCCTGCACT TERM 244 260094 - 260107 + r 82 -8.1 -4.58283 | GTTCCCCATCTTGAT GCGTC TTAA GACGC TTTTTACAGACATTG Shew_0243 261229 - 260264 - | LysR family transcriptional regulator TERM 245 261167 - 261190 + g 79 -8.2 -4.51197 | CTGATGACTCTGCCC GTGTTCATAG ACGG CGATGAACAC TTTTAATTGATTGTA TERM 246 261607 - 261627 + H 79 -4.1 -5.30616 | opp_overlap 261609 261612, overlap 261609 261617 TACCCGCTCTCTATA AATAATTTC ATA GAAATTATA TTTTTATTTGAATCG TERM 247 261609 - 261625 + H 72 -6.7 -4.2793 | opp_overlap 261609 261612, overlap 261607 261617 CCCGCTCTCTATAAA TAATTTC ATA GAAATTA TATTTTTATTTGAAT Shew_0244 261778 - 262473 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 248 262960 - 262945 - g 71 -7.5 -4.07687 | ACTCGGGTGCTAAAA CGCGC GGGCAA GCGCG GCGGTGGCGAGTGGG Shew_0245 262483 - 265521 + | molydopterin dinucleotide-binding region TERM 249 265595 - 265620 + F 100 -5.9 -5.80364 | overlap 265596 TATCCTGTAAACCTT TCCCCCGTCGC CTCG GCTTCGGGGGC TTTTTTTATTCAGCT TERM 250 265596 - 265619 + F 81 -9.4 -4.06592 | overlap 265595 ATCCTGTAAACCTTT CCCCCGTCGC CTCG GCTTCGGGGG CTTTTTTTATTCAGC TERM 251 266150 - 266139 - g 72 -2.2 -4.87803 | overlap 266141 266143 CAGCTTCAAACAAAA TGGA CTGA CCCA ATCGGTCACCAATGT Shew_0246 265675 - 266292 + | hypothetical protein Shew_0247 266599 - 266994 + | hypothetical protein Shew_0248 267039 - 267596 + | GCN5-related N-acetyltransferase Shew_0249 268594 - 268052 - | GCN5-related N-acetyltransferase Shew_0250 269783 - 268605 - | MerR family transcriptional regulator Shew_0251 270161 - 270757 + | phage integrase family protein TERM 252 270895 - 270860 - T 78 -8.4 -4.09117 | gap 1, opp_overlap 270862 270865, overlap 270862 CTTATCCACAAATAA GACAACCAAGCCGA-GT TAA ACGTAGGCTTGGTTGTT GTGACATTAAGTTCT TERM 253 270862 - 270893 + T 80 -11 -3.37236 | gap 1, opp_overlap 270860 270862, overlap 270865 TATCCACAAATAAGA CAACCAAGCCGA-GT TAA ACGTAGGCTTGGTTG TTGTGACATTAAGTT TERM 254 270893 - 270862 - T 83 -11 -3.63766 | gap 1, opp_overlap 270862 270865, overlap 270860 TATCCACAAATAAGA CAACCAAGCCGA-GT TAA ACGTAGGCTTGGTTG TTGTGACATTAAGTT Shew_0252 271894 - 270902 - | hypothetical protein TERM 255 271503 - 271525 + g 83 -7.7 -4.7497 | TTTAGCAGAGCCATG GGGATTTGC TCAAC GCTAATCCC TTTTTGCTGCGTAAA TERM 256 271557 - 271543 - G 71 -4.2 -4.56597 | opp_overlap 271529, overlap 271545 271552 TTTGCTGCGTAAAAA CAGCAA TCA TTGCGG TTGAGACAATCAGCA Shew_0253 272990 - 271884 - | secretion protein HlyD family protein TERM 257 272436 - 272453 + g 76 -4.1 -4.93296 | ATCAATTCCTCTCGG GCCAAAC TCTT GTTTCGC TTTTTCTAGTGCTGA Shew_0254 273519 - 273010 - | hypothetical protein TERM 258 274073 - 274083 + G 70 -3.2 -4.78572 | overlap 274067 TGGTTTAATGTGGGC GGTG GCT TACC TTTTGTTACTTGAGC Shew_0255 273651 - 274331 + | ion transport 2 domain-containing protein TERM 259 274849 - 274826 - T 78 -8.8 -4.15044 | overlap 274829 GGGGCCGGGAAGAAA GGAGGGAGCC ATCT GACTCCCTAC CAGATGCCCGCTATT Shew_0256 275438 - 274860 - | hypothetical protein TERM 260 275506 - 275537 + r 78 -11 -3.27022 | opp_overlap 275514, overlap 275514 GAAAACGGCTGTTGA TTAAAAAAGCGCCA AAAT TGGCGCTTTTTCGA TTGATGTCAGCTCGG TERM 261 275514 - 275529 + r 91 -10.4 -4.76892 | opp_overlap 275514, overlap 275506 CTGTTGATTAAAAAA GCGCCA AAAT TGGCGC TTTTTCGATTGATGT TERM 262 275529 - 275514 - R 93 -10.4 -5.14563 | opp_overlap 275514 275506 CTGTTGATTAAAAAA GCGCCA AAAT TGGCGC TTTTTCGATTGATGT Shew_0257 277652 - 275574 - | peptidase S9 prolyl oligopeptidase TERM 263 276861 - 276885 + g 70 -5.6 -4.3586 | overlap 276848 276864 GGGCGCCTGTTCGCG CCAGGCGCTG TCTTC CAGCACCTTG TTTTGCTGTGACTGG Shew_0258 278701 - 277754 - | hypothetical protein Shew_0259 279215 - 278814 - | hypothetical protein Shew_0260 279538 - 280386 + | hypothetical protein TERM 264 280457 - 280474 + F 87 -4.8 -5.36441 | opp_overlap 280457 AAGCAATACTAAAGA GGCGAT CTGAGT GTCGCC TTTTTTATGTCCGGA TERM 265 280581 - 280599 + F 75 -11 -2.84878 | overlap 280575 280580 280584 TTATGTCTCTGGTCG CAGGGCCA TAT TGGCCTTG GTTTAGGTTGGACAA TERM 266 280584 - 280596 + F 75 -9.1 -3.57106 | overlap 280575 280581 280580 TGTCTCTGGTCGCAG GGCCA TAT TGGCC TTGGTTTAGGTTGGA Shew_0261 280637 - 280948 + | hypothetical protein TERM 267 280992 - 281004 + G 71 -4.7 -4.63932 | GCAAGATTATTTCGA CCAGC TGA GCGGG TTTTATTCCCAGGTG TERM 268 281740 - 281766 + G 75 -8.7 -4.128 | GATTTCGGCCCCTTC GCCTTCCTCGA TACCT TCGAGGAGGAC TTTATCTGTAACCAT TERM 269 282109 - 282125 + G 70 -5.1 -4.45083 | CCAAACAGCCAACAT TCGTCTC TGA GGGATGA TTTTATCGATCTCGC Shew_0262 280966 - 282420 + | hypothetical protein Shew_0263 282491 - 282796 + | hypothetical protein Shew_0264 282793 - 283794 + | serine/threonine protein kinase Shew_0265 283924 - 284535 + | DSBA oxidoreductase TERM 270 284556 - 284569 + F 100 -9.5 -5.4505 | opp_overlap 284556 AGTCGGTTATCGAAA GGGGC TTAG GCCCC TTTTTTGTTGCCCAG TERM 271 284569 - 284556 - f 77 -9.5 -3.64822 | opp_overlap 284556 AGTCGGTTATCGAAA GGGGC TTAG GCCCC TTTTTTGTTGCCCAG TERM 272 284596 - 284624 + F 77 -9.7 -3.65046 | opp_overlap 284596 CCAGAATAAAAAAAA CCGTATTTCCG GTCGCTG TGGAAATACGG TTATTGAGCTAAAAA TERM 273 284624 - 284596 - f 100 -9 -6.17268 | opp_overlap 284596 CCAGAATAAAAAAAA CCGTATTTCC GGTCGCTGT GGAAATACGG TTATTGAGCTAAAAA TERM 274 284689 - 284702 + F 87 -6.7 -5.28942 | opp_overlap 284689 284688 CAGCGTGTCAAAAAT TTGGC AAGC GCCAA TTTTTATTTCGCCTA TERM 275 284710 - 284744 + F 74 -5.8 -4.61231 | overlap 284714 AGCGCCAATTTTTAT TTCGCCTAGTCTATTA GTC TGATAGACAAGGTAAA TTTTTAGCACTATGG Shew_0266 284873 - 285085 + | hypothetical protein Shew_0267 285361 - 285155 - | hypothetical protein Shew_0268 285829 - 285548 - | transcriptional antiterminator, Rof Shew_0269 285926 - 286813 + | hypothetical protein TERM 276 286862 - 286849 - T 100 -9.5 -5.4833 | opp_overlap 286849 TCACCCAATAAAAAA GCCCC TTGG GGGGC TTTCTCGTAAAGACT TERM 277 286849 - 286862 + T 81 -9.5 -3.96327 | opp_overlap 286849 TCACCCAATAAAAAA GCCCC TTGG GGGGC TTTCTCGTAAAGACT Shew_0270 287517 - 286882 - | hypothetical protein TERM 278 287614 - 287637 + H 75 -8.8 -3.72893 | opp_overlap 287613 GTGTGACGAAATGAG CGGGCTACTC CTGT GAGTGGGCCG TTTGATAAAGGAGTG Shew_0271 287658 - 289007 + | phospholipase TERM 279 289051 - 289003 - T 100 -16.1 -2.57564 | opp_overlap 289018 289040, overlap 289018 GGATCTCCCCAGAAG GTTAAGACTAAAAAAGCGGAGCC CTA GGCTCCGCTTTTTTAGGCATGGC TGCCGAGACTATTTC TERM 280 289036 - 289018 - T 100 -16 -5.27779 | opp_overlap 289018, overlap 289003 GTTAAGACTAAAAAA GCGGAGCC CTA GGCTCCGC TTTTTTAGGCATGGC TERM 281 289018 - 289036 + T 100 -16 -5.03314 | opp_overlap 289018 289003 GTTAAGACTAAAAAA GCGGAGCC CTA GGCTCCGC TTTTTTAGGCATGGC Shew_0272 289803 - 289060 - | cupin 2 domain-containing protein TERM 282 289127 - 289162 + g 83 -7.7 -4.6856 | gap 2, overlap 289128 CGCTTACGTATGGCA TCTACGCG--GTCGAAG GCTT CTTCGGCAACGCGTAGG TTTTTCACGTCTTTA TERM 283 289819 - 289836 + r 71 -10.5 -2.82666 | overlap 289818 289816 TCCTGTCCTATTTTT TGCGGCC CTTG GGCCGCG CTATTTTGGGTGTAA Shew_0273 291039 - 289975 - | hypothetical protein TERM 284 291094 - 291078 - R 100 -10.9 -5.38497 | AGGGAAATGAAAAAA GCCCTAT CAG ATAGGGC CAGATTTAAAATGCG Shew_0274 292340 - 291207 - | hypothetical protein Shew_0275 292750 - 292382 - | tetraheme cytochrome c, putative Shew_0276 294273 - 292756 - | flavocytochrome c TERM 285 294368 - 294393 + H 75 -4.8 -4.87273 | opp_overlap 294367 294368 TTCTGGGTGGCAAAC TTATTCGTGA ACCATG TCCCGAATAA TTTTTCTGAAATGTT TERM 286 294520 - 294502 - H 82 -8.9 -4.15788 | AAGCGGTGCAATAAA GACCTCA TTGCG TGAGGTC AGTCCCGATTAAATC Shew_0277 294605 - 295390 + | TetR family transcriptional regulator TERM 287 295414 - 295394 - f 100 -12.6 -5.1356 | overlap 295378 GCTTATCAATAAAAA GCCCTCGA TAGGG TCGAGGGC TGGGTCAAATTTGTC Shew_0278 295678 - 296769 + | branched-chain amino acid aminotransferase TERM 288 296808 - 296792 - T 100 -13.7 -4.80882 | opp_overlap 296792 ATCTGATATGAAAAA GGCGCCT ACG AGGCGCC TTTTTTAATTGAACA TERM 289 296792 - 296808 + T 100 -13.7 -5.26875 | opp_overlap 296792 ATCTGATATGAAAAA GGCGCCT ACG AGGCGCC TTTTTTAATTGAACA Shew_0279 297241 - 296813 - | hypothetical protein TERM 290 296879 - 296914 + g 76 -5.4 -4.7373 | opp_overlap 296882 296883, overlap 296882 296883 GTCGACTGTGGCGTT AAATCTCTGCTCGCTA AATC TGGCTAGCAGAGCTTC TTTTTGCTCGGGTGA TERM 291 296882 - 296911 + g 74 -7.1 -4.47707 | opp_overlap 296882 296883, overlap 296879 296883 GACTGTGGCGTTAAA TCTCTGCTCGCTA AATC TGGCTAGCAGAGC TTCTTTTTGCTCGGG TERM 292 296883 - 296910 + g 70 -10.6 -3.27901 | opp_overlap 296882 296883, overlap 296882 296879 ACTGTGGCGTTAAAT CTCTGCTCGCTA AATC TGGCTAGCAGAG CTTCTTTTTGCTCGG TERM 293 297404 - 297367 - R 100 -15.8 -3.38224 | opp_overlap 297372, overlap 297372 ATCTGATTTTAAAGA GAAAAGGCCTTGCC GGAAGGGAGG GGCAAGGCCTTTTC AAGTCGATGCCAACG TERM 294 297372 - 297399 + r 81 -9.9 -4.14739 | opp_overlap 297367 297372 ATTTTAAAGAGAAAA GGCCTTGCC GGAAGGGAGG GGCAAGGCC TTTTCAAGTCGATGC TERM 295 297399 - 297372 - R 91 -9.9 -4.79451 | opp_overlap 297372, overlap 297367 ATTTTAAAGAGAAAA GGCCTTGCC GGAAGGGAGG GGCAAGGCC TTTTCAAGTCGATGC Shew_0280 298150 - 297449 - | GntR family transcriptional regulator Shew_0281 299291 - 298344 - | phospholipid/glycerol acyltransferase TERM 296 299300 - 299284 - G 72 -2.3 -5.00616 | GGTCCGGGTAAAAAA TTTAGCA TCT TTCTAAA GCACCTTATCTGCGG Shew_0282 300200 - 299316 - | phospholipid/glycerol acyltransferase Shew_0283 301836 - 300316 - | Mg chelatase, subunit ChlI TERM 297 301840 - 301851 + H 76 -3 -5.29445 | opp_overlap 301840, overlap 301834 GGCGATGGCCATAAA CAAA TCCT TTTG TTTTTGTTATTAAAC Shew_0284 302166 - 303491 + | hypothetical protein Shew_0285 304401 - 303520 - | diguanylate cyclase Shew_0286 305408 - 304599 - | extracellular solute-binding protein TERM 298 305454 - 305468 + r 79 -4.2 -5.2189 | opp_overlap 305447, overlap 305447 305456 305464 TCAGTATAGCAGAGG CCTGCT TTA AGCAAG TTTTTTGCTAATTGA Shew_0287 306360 - 305476 - | DNA-binding transcriptional regulator IlvY Shew_0288 306553 - 308034 + | ketol-acid reductoisomerase TERM 299 308188 - 308201 + F 85 -8.1 -4.60487 | AGCGCTGCCCGAGAC GCCTG TGAA CAGGC TTTTTACAGATAGTC TERM 300 308475 - 308452 - f 100 -13.8 -3.96469 | opp_overlap 308452 AGATTGCAACAAGAA CCCCCGCTCC GAAA GGACCGGGGG TTTTTTGTTTTTAGC TERM 301 308452 - 308475 + F 100 -13.8 -5.93252 | opp_overlap 308452 AGATTGCAACAAGAA CCCCCGCTCC GAAA GGACCGGGGG TTTTTTGTTTTTAGC TERM 302 309947 - 309961 + G 78 -4.2 -5.00884 | CTGGGGATGGTGAAG CAGTGG CAA CAACTG TTTTTTGAAGAACGT Shew_0289 308543 - 310216 + | acetolactate synthase 2 catalytic subunit ilvM 310213 - 310482 + | acetolactate synthase 2 regulatory subunit Shew_0291 310509 - 311432 + | branched-chain amino acid aminotransferase TERM 303 311492 - 311467 - f 80 -7.5 -4.49167 | opp_overlap 311461, overlap 311461 AAGATAAGATTAAAA CCTCGGCGG TGGATTTG CCGTCGAGG TTCCAATTTAGCTCA Shew_0292 311545 - 313395 + | dihydroxy-acid dehydratase TERM 304 314242 - 314266 + G 86 -14.9 -3.35679 | opp_overlap 314238 CTTCGAGGATACCCG CGCCATCGCCG AAC CGGCGGGGGCG TTGTCACTGGCGGGG Shew_0293 313397 - 314947 + | threonine dehydratase TERM 305 314992 - 315005 + F 100 -3.7 -5.84432 | opp_overlap 314991 CTTTAACGTTAAAGG GACGC GATG GCGCC TTTTTTTATGTTATC Shew_0294 315341 - 316483 + | alanine--glyoxylate transaminase TERM 306 316498 - 316525 + T 100 -13.6 -3.62597 | opp_overlap 316505, overlap 316505 AACCAACTGCAAATT TAAAAAAGGGGC TTAG GCCCCTTTTTTG TTGTTAGCGCCTCCC TERM 307 316518 - 316505 - T 100 -9.5 -5.22039 | opp_overlap 316505 316498 TGCAAATTTAAAAAA GGGGC TTAG GCCCC TTTTTTGTTGTTAGC TERM 308 316505 - 316518 + T 100 -9.5 -5.64873 | opp_overlap 316505, overlap 316498 TGCAAATTTAAAAAA GGGGC TTAG GCCCC TTTTTTGTTGTTAGC Shew_0295 316989 - 316564 - | hypothetical protein Shew_0296 317368 - 317838 + | heat shock protein Hsp20 TERM 309 317906 - 317889 - T 95 -14.1 -3.19246 | opp_overlap 317889 CGAATGTGAATCGAA GGCGCCC AGTT GGGCGCC TTTTCACTGAATTAC TERM 310 317889 - 317906 + T 100 -14.1 -4.21275 | opp_overlap 317889 CGAATGTGAATCGAA GGCGCCC AGTT GGGCGCC TTTTCACTGAATTAC Shew_0297 319835 - 317928 - | hypothetical protein TERM 311 319373 - 319385 + g 74 -4.8 -4.82901 | TGTTTGTGAGTTGTG GCTG CGGAA CAGC TTTTTCTACGCGAAC Shew_0298 321049 - 319961 - | Zn-dependent hydrolase of the beta-lactamase fold TERM 312 320369 - 320381 + g 83 -7.7 -4.83169 | overlap 320366 320364 AATGACATAGCTGGC CCAGA GGG TCTGG TTTTTGTCCCAAAGT TERM 313 320700 - 320690 - G 71 -8.2 -3.89215 | GCCGATAAAGCTAAA GGGC GAG GCCC GGTCGCTAAAAACGG Shew_0299 321214 - 321822 + | TetR family transcriptional regulator TERM 314 321862 - 321887 + T 95 -12 -4.26188 | opp_overlap 321862 TTGCCCAAATAAAAA GCCTAGTCAT ATCCCA ATGACTAGGC TTTTGCGTATCTGAG TERM 315 321887 - 321862 - T 100 -12 -5.27335 | opp_overlap 321862 TTGCCCAAATAAAAA GCCTAGTCAT ATCCCA ATGACTAGGC TTTTGCGTATCTGAG Shew_0300 323311 - 321953 - | sodium:neurotransmitter symporter Shew_0301 324049 - 323549 - | AsnC family transcriptional regulator Shew_0302 324891 - 324124 - | phosphoesterase, PA-phosphatase related TERM 316 324528 - 324518 - G 74 -4.6 -4.82901 | CTGGCCTGATAAAAA CCGC TAA GCGA CAGCCCTTGGTTCTC Shew_0303 326350 - 324998 - | hypothetical protein TERM 317 326545 - 326504 - R 100 -12.5 -4.94147 | gap 1, opp_overlap 326518, overlap 326511 326518 AAGAAGAGAATAAAA CAGCCAACAAAAAAGAGCGC CGA GCGCTCTTTTTCAT-GGATG GACGACGCTTACGCG TERM 318 326539 - 326511 - R 95 -13.3 -3.32579 | opp_overlap 326518, overlap 326504 326518 GAATAAAACAGCCAA CAAAAAAGAGCGC CGA GCGCTCTTTTTCA TGGATGGACGACGCT TERM 319 326532 - 326518 - R 100 -11.4 -5.49234 | opp_overlap 326518, overlap 326511 326504 ACAGCCAACAAAAAA GAGCGC CGA GCGCTC TTTTTCATGGATGGA TERM 320 326518 - 326532 + r 100 -11.4 -4.7497 | opp_overlap 326518 326511 326504 ACAGCCAACAAAAAA GAGCGC CGA GCGCTC TTTTTCATGGATGGA Shew_0304 326833 - 326573 - | hypothetical protein Shew_0305 327074 - 329086 + | ATP-dependent DNA helicase Rep Shew_0306 331764 - 329116 - | diguanylate cyclase/phosphodiesterase with GAF sensor TERM 321 332501 - 332480 - R 100 -15.9 -3.52459 | opp_overlap 332480 332498 ACCAATCCTAGATAA GCCCCTCGA GTCA TCGAGGGGC TTTTTCTTTGCCCGT TERM 322 332480 - 332501 + r 100 -15.9 -5.27938 | opp_overlap 332480, overlap 332498 ACCAATCCTAGATAA GCCCCTCGA GTCA TCGAGGGGC TTTTTCTTTGCCCGT TERM 323 332592 - 332575 - R 100 -12.7 -5.86332 | opp_overlap 332575 TCAAGGTAAAAAAAA GCTGCCC AAGT GGGCAGC TTTGTCGTTTATAGC TERM 324 332575 - 332592 + r 100 -12.7 -4.17701 | opp_overlap 332575 TCAAGGTAAAAAAAA GCTGCCC AAGT GGGCAGC TTTGTCGTTTATAGC Shew_0307 334523 - 332601 - | diguanylate cyclase/phosphodiesterase Shew_0308 335239 - 334532 - | hypothetical protein Shew_0309 335861 - 335256 - | OmpA/MotB domain-containing protein Shew_0310 337273 - 335861 - | TolC family type I secretion outer membrane protein Shew_0311 338687 - 337305 - | HlyD family type I secretion membrane fusion protein Shew_0312 340860 - 338680 - | ABC transporter-related protein TERM 325 340985 - 340939 - R 82 -10.5 -3.88442 | gap 1, opp_overlap 340946, overlap 340946 CAAAACATCACCAAA GTAA-AAATGACACCAATTAGC CGAA ACTAGTTGGTGCCATTTGTTAC TGACCTTTATTAAGG TERM 326 340946 - 340977 + r 76 -8.1 -4.25458 | opp_overlap 340939 340946 TCACCAAAGTAAAAA TGACACCAATTAG CCGAAA CTAGTTGGTGCCA TTTGTTACTGACCTT TERM 327 340977 - 340946 - R 91 -8.8 -5.01811 | opp_overlap 340946, overlap 340939 TCACCAAAGTAAAAA TGACACCAATTAGC CGAA ACTAGTTGGTGCCA TTTGTTACTGACCTT Shew_0313 355505 - 340995 - | putative outer membrane adhesin like proteiin TERM 328 355174 - 355198 + g 74 -11.5 -3.36327 | overlap 355166 355180 GCATCAGCTTCAGCG GCCGAAGTTTC ATT GAGACTTTGGC TTGTAAATGAGGTGC TERM 329 355593 - 355564 - R 100 -12.3 -5.96219 | gap 1, overlap 355579 GATTGACAAAAAAAA GGCCAAACCACTAA TTG TTAG-GGCTTGGCC TTACAGGGTGTCGCG Shew_0314 360283 - 355622 - | putative outer membrane adhesin like proteiin TERM 330 357661 - 357689 + g 77 -12.4 -3.28924 | TCTCCTCATGGGTCT CGCCTTGGGCGA GGGCA TCGACCAGGGCG TTATCGGCCAGGGTG TERM 331 358021 - 358049 + g 77 -12.4 -3.28924 | opp_overlap 358042 TCTCCTCATGGGTCT CGCCTTGGGCGA GGGAA TCGACCAGGGCG TTATCGGCCAGGGTG TERM 332 358381 - 358409 + g 77 -12.4 -3.28924 | TCTCCTCATGGGTCT CGCCTTGGGCGA GGGCA TCGACCAGGGCG TTATCGGCCAGGGTG TERM 333 358741 - 358769 + g 77 -12.4 -3.28924 | TCTCCTCATGGGTCT CGCCTTGGGCGA GGGCA TCGACCAGGGCG TTATCGGCCAGGGTG TERM 334 360544 - 360515 - R 82 -10.2 -3.87815 | opp_overlap 360522, overlap 360522 GGGCATTTTTATAAA TAAAAAACCACC AGTAAA GGTGGTTTCTTA GTTGAAAACAGTATA TERM 335 360537 - 360522 - R 100 -6.1 -5.72622 | opp_overlap 360522, overlap 360515 TTTATAAATAAAAAA CCACC AGTAAA GGTGG TTTCTTAGTTGAAAA TERM 336 360522 - 360537 + r 73 -6.1 -4.3255 | opp_overlap 360522 360515 TTTATAAATAAAAAA CCACC AGTAAA GGTGG TTTCTTAGTTGAAAA TERM 337 360582 - 360565 - R 87 -5.5 -5.38321 | opp_overlap 360565 360576, overlap 360576 AAACAGTATAAAAAA GCGTCAA AAAA TTGCCGC TTTTCGGTAATTCTG TERM 338 360592 - 360576 - R 71 -2.2 -5.08011 | opp_overlap 360565 360576, overlap 360565 AAAAGCGTCAAAAAA TTGCCG CTTTT CGGTAA TTCTGCAGTGCCTGG Shew_0315 361734 - 360568 - | HemY domain-containing protein Shew_0316 362873 - 361731 - | protein of unknown function DUF513, hemX TERM 339 361900 - 361910 + g 70 -5.4 -4.37092 | opp_overlap 361900 TCGAGATCGAAATAC TGGA AGA TCCA TTTTCTGGCCAGCGT TERM 340 362849 - 362862 + g 74 -3.1 -4.94992 | TGGTGGCGACCGCTT TACTC TCTT GGGTA TTTTTGTCCATTTAG Shew_0317 363660 - 362929 - | uroporphyrinogen III synthase HEM4 hemC 364616 - 363663 - | porphobilinogen deaminase cyaA 364802 - 367222 + | adenylate cyclase Shew_0320 367604 - 367230 - | frataxin family protein Shew_0321 368094 - 368261 + | hypothetical protein Shew_0322 368267 - 369511 + | diaminopimelate decarboxylase dapF 369549 - 370388 + | diaminopimelate epimerase Shew_0324 370397 - 371023 + | hypothetical protein Shew_0325 371031 - 371924 + | tyrosine recombinase XerC TERM 341 372010 - 372030 + G 75 -9.7 -3.85698 | CCTATCATCATGGCG GCTGAGCAG CGC CTGCTAAGC TTTCTGGCACAAAGG Shew_0326 371917 - 372639 + | HAD family hydrolase Shew_0327 372741 - 373316 + | HupE/UreJ protein TERM 342 373306 - 373324 + T 73 -10.2 -3.05384 | GTGGTTATCTGATTG TCGGCGCC TAG GCCGCCGA TTGGATAGGGGCGCC TERM 343 373332 - 373353 + T 100 -12.9 -3.71998 | GCCGCCGATTGGATA GGGGCGCCG ATTG CTGCGCCCC TTCTCTTGCTAAGTG Shew_0328 374145 - 373429 - | hypothetical protein TERM 344 374382 - 374357 - R 100 -14.7 -4.54727 | opp_overlap 374357 CGGCTTAAAGCAAAA CGGGCCCACCA TCGC TGGCGAGCCCG TTCAATACAGCTGAC TERM 345 374357 - 374382 + r 73 -10.3 -3.06183 | opp_overlap 374357 CGGCTTAAAGCAAAA CGGGCCCACCA TCGC TGGCGAGCCCG TTCAATACAGCTGAC Shew_0329 374713 - 374408 - | Fis family transcriptional regulator TERM 346 374778 - 374756 - R 74 -7 -4.31379 | opp_overlap 374756 374759 374777, overlap 374759 374774 ACTAATTCATCAAAA TAACGCTCCA ACA TGGAACGTTG TTCTTCAACAGTTTC Shew_0330 375699 - 374731 - | nifR3 family TIM-barrel protein TERM 347 374775 - 374759 - G 79 -8.7 -4.2693 | opp_overlap 374759 374756, overlap 374756 374774 AATTCATCAAAATAA CGCTCCA ACA TGGAACG TTGTTCTTCAACAGT TERM 348 375816 - 375842 + r 76 -7.8 -4.15543 | opp_overlap 375816, overlap 375823 TTTGCGAGGTGAGAA GTCTGTGGCGGC CTT GCGGCCGCTGGC TTTTACCCCTATTTG TERM 349 375823 - 375838 + r 79 -11.8 -2.75081 | opp_overlap 375816, overlap 375816 GGTGAGAAGTCTGTG GCGGCC TTGC GGCCGC TGGCTTTTACCCCTA prmA 376732 - 375851 - | ribosomal protein L11 methyltransferase TERM 350 377174 - 377188 + G 77 -2.8 -5.14563 | opp_overlap 377162, overlap 377165 377162 ACAGAGTGCCACCGG CATCTT ATT GGGATG TTTTTTGCTGGCGCA Shew_0332 377079 - 377801 + | fumarate reductase cytochrome b-556 subunit TERM 351 377983 - 378023 + G 77 -10.6 -3.7732 | opp_overlap 377995 ATAATGTAAGCGGTT GGCTCGACATGA-GCCAGAG TGT CTCTGGCGTCATCTTG-GCC TTGTTCCTCTGGACA TERM 352 378011 - 377995 - g 70 -12.3 -2.62184 | opp_overlap 377983 GTTGGCTCGACATGA GCCAGAG TGT CTCTGGC GTCATCTTGGCCTTG Shew_0333 377946 - 378617 + | fumarate reductase respiratory complex, transmembrane subunit Shew_0334 378664 - 380670 + | fumarate reductase flavoprotein subunit TERM 353 381359 - 381336 - g 77 -11 -3.56099 | overlap 381358 GACAACTGTCCTAAA GACCTGCCGC ATAT GCAGCAGATC GCCTATCTCAGACGT sdhB 380667 - 381398 + | fumarate reductase iron-sulfur subunit TERM 354 381454 - 381439 - f 80 -10.4 -3.7941 | opp_overlap 381439 CATCCTTCACAAGAA GCCTGC CCGA GCAGGC TTTTTTATTGGCACC TERM 355 381439 - 381454 + F 100 -10.4 -5.4505 | opp_overlap 381439 CATCCTTCACAAGAA GCCTGC CCGA GCAGGC TTTTTTATTGGCACC TERM 356 381484 - 381520 + F 100 -14.1 -4.59109 | opp_overlap 381504, overlap 381485 CAAATCCACCACTTG GCTTACTTTTATCAAAA ATA TTTTGATAAAAGTAAGG TTTTTAGCCAGTCTA TERM 357 381485 - 381519 + F 100 -17.6 -3.34984 | opp_overlap 381504, overlap 381484 AAATCCACCACTTGG CTTACTTTTATCAAAA ATA TTTTGATAAAAGTAAG GTTTTTAGCCAGTCT Shew_0336 381590 - 382513 + | LysR family transcriptional regulator TERM 358 382534 - 382519 - T 100 -10.4 -5.64274 | opp_overlap 382490 382519 GCAGGCATAAAAAAA GCCGCA TCTT TGCGGC TTTTTTATCGATAAC TERM 359 382519 - 382534 + T 100 -10.4 -5.28176 | opp_overlap 382519, overlap 382490 GCAGGCATAAAAAAA GCCGCA TCTT TGCGGC TTTTTTATCGATAAC rho 383854 - 382589 - | transcription termination factor Rho Shew_0338 384411 - 384085 - | thioredoxin Shew_0339 384583 - 385890 + | ATP-dependent RNA helicase RhlB Shew_0340 385890 - 386822 + | Ppx/GppA phosphatase Shew_0341 387111 - 389840 + | TonB-dependent receptor TERM 360 389872 - 389857 - T 95 -11.8 -4.39568 | opp_overlap 389857 ATTTATAGAGCAAAA GGCCGC AGTT GCGGCC TTTTTTATTGGTGCG TERM 361 389857 - 389872 + T 100 -11.8 -5.5112 | opp_overlap 389857 ATTTATAGAGCAAAA GGCCGC AGTT GCGGCC TTTTTTATTGGTGCG Shew_0342 390427 - 389891 - | hypothetical protein Shew_0343 391235 - 390657 - | hypothetical protein Shew_0344 391653 - 393173 + | Na+/H+ antiporter NhaC TERM 362 393232 - 393220 - T 100 -5.5 -5.73339 | overlap 393221 AGAAGCATAAAAAAA TCCGC CCG GCGAA ATCACTGGCGTCGTG TERM 363 393277 - 393294 + T 90 -12.7 -3.40073 | TAAAGTGATGGTGGG TGGCGCC TAAG GGCGCCA TTGCTTAATGAAGAT Shew_0345 393934 - 393299 - | redoxin domain-containing protein Shew_0346 394377 - 393931 - | cytochrome C biogenesis protein Shew_0347 396371 - 394380 - | cytochrome c assembly protein Shew_0348 396809 - 398848 + | cytochrome c, putative TERM 364 398914 - 398886 - f 100 -13.8 -3.27774 | opp_overlap 398889, overlap 398889 TAGGTCAATCACTAA CCACCCGGCGCC TTTCC GGCGCCGGGTAT TAGAGGAGAGAGAAG TERM 365 398911 - 398889 - f 100 -17.7 -2.81815 | opp_overlap 398889, overlap 398886 GTCAATCACTAACCA CCCGGCGCC TTTCC GGCGCCGGG TATTAGAGGAGAGAG TERM 366 398889 - 398911 + F 100 -17.7 -3.01712 | opp_overlap 398889 398886 GTCAATCACTAACCA CCCGGCGCC TTTCC GGCGCCGGG TATTAGAGGAGAGAG Shew_0349 398930 - 399355 + | rhodanese domain-containing protein Shew_0350 399422 - 400225 + | peptidylprolyl isomerase, FKBP-type TERM 367 400353 - 400340 - g 70 -5.2 -4.43681 | overlap 400342 CATCCAAGAGGAAAA CGCC CTGGCT GGCG ATGCGACCATCCCTG Shew_0351 400254 - 400946 + | TPR repeat-containing protein Shew_0352 401064 - 401711 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 368 402360 - 402336 - g 71 -12.1 -2.75713 | overlap 402333 402329 402327 402323 AAGACAGACACAGCA GCGACATGCAG ATT CTGCACGGCGC CGAGTGGCCCATCAT Shew_0353 401714 - 402661 + | polysulphide reductase, NrfD TERM 369 402671 - 402695 + F 100 -15.8 -3.60792 | ATCTGACCATCTTGC TCAGCCCCTG GGTGA CAGGGGCTGA TTTCCAGCTTAGGAG Shew_0354 402716 - 403204 + | NosL family protein TERM 370 404250 - 404240 - g 71 -6.8 -4.25104 | TCTTGTCTATCAAAA CCAG TTT CTGG CCAATGCCACTCAGG Shew_0355 403215 - 404573 + | periplasmic copper-binding Shew_0356 404570 - 405499 + | ABC transporter-related protein TERM 371 405960 - 405993 + G 74 -11.7 -3.23216 | overlap 405957 405962 405965 ATCGTCATTCGCGCT GCTGATCGCCAGCAG CTGT CTGCTGGCGGTAATC TTCATCCTCATCAGC TERM 372 405962 - 405991 + G 75 -12.9 -3.18023 | overlap 405957 405960 405965 CGTCATTCGCGCTGC TGATCGCCAGCAG CTGT CTGCTGGCGGTAA TCTTCATCCTCATCA TERM 373 405965 - 405988 + G 79 -14.6 -2.78495 | overlap 405957 405962 405960 CATTCGCGCTGCTGA TCGCCAGCAG CTGT CTGCTGGCGG TAATCTTCATCCTCA Shew_0357 405496 - 406347 + | copper ABC transporter, permease protein TERM 374 407071 - 407061 - g 71 -8.2 -3.87815 | CGTGACGCTGATAAA CCCC AAG GGGG TCGATAGCCTGCACC Shew_0358 406528 - 407808 + | transcriptional regulator, CadC TERM 375 407865 - 407835 - T 85 -11.9 -3.34013 | overlap 407836 407839 TAGGGCTTGAATCAA GTTAGCCCCGGTC TCGCG GACCAGGGCTAAG CGCAGATGAGATTTA TERM 376 407864 - 407836 - T 93 -15.4 -2.60194 | overlap 407835 407839 AGGGCTTGAATCAAG TTAGCCCCGGTC TCGCG GACCAGGGCTAA GCGCAGATGAGATTT TERM 377 407861 - 407839 - T 81 -12.7 -2.60244 | overlap 407836 407835 GCTTGAATCAAGTTA GCCCCGGTC TCGCG GACCAGGGC TAAGCGCAGATGAGA fre 408576 - 407878 - | FMN reductase TERM 378 408604 - 408662 + r 79 -7.7 -4.35747 | gap 2, opp_overlap 408625, overlap 408594 408614 408647 CAGACCCTCTCTGTG GAGGTTTAGCACCTCTGAATACCCGATTA AAT TGTTCGGGTATTCAAAGG-GTT-GACTTC TTTGATTTATTTTTA TERM 379 408614 - 408654 + r 76 -10.5 -3.35183 | opp_overlap 408625, overlap 408604 408647 CTGTGGAGGTTTAGC ACCTCTGAATACCCGATTA AAT TGTTCGGGTATTCAAAGGG TTGACTTCTTTGATT Shew_0360 410192 - 408711 - | UbiD family decarboxylase TERM 380 409905 - 409893 - G 74 -10.5 -3.57462 | opp_overlap 409889 GATGGCATCTTTAAA GCCGC GTG GCGGC TCAGGTTCCTTGAGG Shew_0361 410360 - 410836 + | hypothetical protein TERM 381 410843 - 410811 - T 71 -9.9 -3.07043 | opp_overlap 410810 TCTATGATTGGAATA GCGACAGCTACGTCA AGC TTAAGTAGCTGTCAC CCTGTTGCTTCTCTT Shew_0362 411581 - 410865 - | signal peptidase I Shew_0363 411699 - 412376 + | nucleotidase Shew_0364 412879 - 412388 - | MshA, mannose-sensitive haemaglutinin TERM 382 412416 - 412446 + g 77 -11.8 -3.26031 | opp_overlap 412416, overlap 412414 412412 412418 412420 TCCACAATCTCGAAA CTTGGGCCCTGGGT AGT ACTCAGGGCCTGTG TGTATTTGAGGTAGC TERM 383 412418 - 412444 + g 75 -13 -3.19285 | opp_overlap 412416, overlap 412416 412414 412412 412420 CACAATCTCGAAACT TGGGCCCTGGGT AGT ACTCAGGGCCTG TGTGTATTTGAGGTA TERM 384 412420 - 412442 + g 85 -15.6 -3.15257 | opp_overlap 412416, overlap 412418 412416 412414 412412 CAATCTCGAAACTTG GGCCCTGGGT AGT ACTCAGGGCC TGTGTGTATTTGAGG TERM 385 413193 - 413172 - H 100 -14.5 -5.16841 | opp_overlap 413172 CCACATTAAGAAAAA GGGCTTCCA GAAA TGGAAGCCC TTTTTCGTTCTAGCC TERM 386 413172 - 413193 + H 100 -14.5 -4.93365 | opp_overlap 413172 CCACATTAAGAAAAA GGGCTTCCA GAAA TGGAAGCCC TTTTTCGTTCTAGCC TERM 387 413626 - 413638 + H 71 -4.7 -4.64861 | AATTTTAAACATCAG GCTGG ATT CCCGC TTTCTTTTACCGAGC Shew_0365 413659 - 414147 + | hypothetical protein Shew_0366 414288 - 415238 + | ubiquinol oxidase, subunit II Shew_0367 415238 - 417226 + | cytochrome-c oxidase Shew_0368 417223 - 417849 + | cytochrome c oxidase, subunit III Shew_0369 417846 - 418172 + | cytochrome C oxidase subunit IV TERM 388 418860 - 418911 + G 79 -10.3 -3.87994 | gap 2 CTTCTACATTGCCCT GTTCGCCCTGGTATCGACCCTGCTA CCCC TGGC-GGGTT-ATACCGGGGTGGGC TTTATGGCGGTGAGT Shew_0370 418183 - 419109 + | protoheme IX farnesyltransferase TERM 389 419194 - 419165 - T 70 -9.3 -3.26318 | opp_overlap 419170, overlap 419170 GCTTTAAGAAGAAAG CAAAAGGCGATCC ATCT GGGTCGCCTTTTT TATTGCCTGGCATCT TERM 390 419170 - 419189 + T 100 -11.4 -5.4833 | opp_overlap 419165 419170 AAGAAGAAAGCAAAA GGCGATCC ATCT GGGTCGCC TTTTTTATTGCCTGG TERM 391 419189 - 419170 - T 90 -9.2 -4.71708 | opp_overlap 419170, overlap 419165 AAGAAGAAAGCAAAA GGCGATCC ATCT GGGTCGCC TTTTTTATTGCCTGG Shew_0371 420100 - 419234 - | AraC family transcriptional regulator TERM 392 419838 - 419859 + g 71 -12.3 -2.77791 | opp_overlap 419837 419838, overlap 419836 419834 TCGCCGTTCTCAAAC CCGGCATCG AGGG CGATGTCGG TGATCTTGAGTTCGG Shew_0372 420629 - 420195 - | hypothetical protein Shew_0373 421046 - 420651 - | hypothetical protein TERM 393 421117 - 421088 - R 93 -10 -5.00616 | gap 1, opp_overlap 421090, overlap 421090 TCCCTGGTTAAAAAA GAGGGCCCG-CAG GGGAA CTGACGGGCCCTT TAAGTTTACAGGATG TERM 394 421090 - 421115 + r 100 -12.6 -3.84451 | gap 1, opp_overlap 421088 421090 CCTGGTTAAAAAAGA GGGCCCG-CAG GGGAA CTGACGGGCCC TTTAAGTTTACAGGA TERM 395 421115 - 421090 - R 100 -12.6 -4.13561 | gap 1, opp_overlap 421090, overlap 421088 CCTGGTTAAAAAAGA GGGCCCG-CAG GGGAA CTGACGGGCCC TTTAAGTTTACAGGA hslU 422448 - 421123 - | ATP-dependent protease ATP-binding subunit Shew_0375 423028 - 422504 - | ATP-dependent protease peptidase subunit Shew_0376 423623 - 425317 + | curlin-associated protein TERM 396 425369 - 425330 - T 79 -11.7 -2.57721 | gap 1, opp_overlap 425341, overlap 425335 425341 TAAGCGATTAACGCA GACAACAAAAA-GCCAGC ATCAA GCTGGCTTTTTTATTGCC TCAAGCATAAAAAAA TERM 397 425363 - 425335 - T 77 -10.4 -3.55814 | opp_overlap 425341, overlap 425330 425341 GATTAACGCAGACAA CAAAAAGCCAGC ATCAA GCTGGCTTTTTT ATTGCCTCAAGCATA TERM 398 425357 - 425341 - T 100 -9.4 -5.24796 | opp_overlap 425341, overlap 425335 425330 CGCAGACAACAAAAA GCCAGC ATCAA GCTGGC TTTTTTATTGCCTCA TERM 399 425341 - 425357 + T 100 -9.4 -5.4833 | opp_overlap 425341 425335 425330 CGCAGACAACAAAAA GCCAGC ATCAA GCTGGC TTTTTTATTGCCTCA TERM 400 425399 - 425386 - T 100 -5.2 -6.02345 | opp_overlap 425384 425386 CAAGCATAAAAAAAA CGGG TCAGGG CCCG TCTTTAGTCTGCTAA Shew_0377 425995 - 425417 - | sporulation domain-containing protein TERM 401 425908 - 425940 + g 70 -9.8 -3.43104 | gap 1, overlap 425907 AGGGGAAGCGTCTCG GCGCTGGTG-CCGGC TGAC GTCGGCCACCCGTGC TCTTCTTACGTCCTT argS 427755 - 426010 - | arginyl-tRNA synthetase TERM 402 427339 - 427361 + g 70 -10.6 -3.24411 | opp_overlap 427336 427335, overlap 427337 427336 GTCACCGATAATGGT TGAACGTAGG TGG CCTACGTGCA TCTCTTTGGCCAGGT TERM 403 427428 - 427462 + g 71 -11.4 -3.14881 | overlap 427440 TTGGCAGGGTTACAC CCAGGTGATCGTCGCT CAG GGCGGCCATCAGCTGG TTGGTCAGGGCGTTC TERM 404 427683 - 427704 + g 74 -7.3 -4.24404 | gap 1, opp_overlap 427683 TACGAGCCTCAAAAT CGGCAGG-GA TGA TCGCCTGCTG TTTTAGGGTTTGAAT Shew_0379 430073 - 427878 - | primosomal protein N' Shew_0380 430339 - 431115 + | hypothetical protein TERM 405 431165 - 431189 + F 74 -10.1 -3.25986 | opp_overlap 431165 GATAACGCAGGAGAA TAGTTGCAGGC TAT GCTTGTAACTA TTGATGGTATCCTGT rpmE 431296 - 431508 + | 50S ribosomal protein L31 TERM 406 431550 - 431534 - f 95 -10.8 -4.64144 | opp_overlap 431534 AAGAACTCTGAAAAA GGCGCC TATAT GGCGCC TTTTTTGTTGCCCGT TERM 407 431534 - 431550 + F 100 -10.8 -5.45652 | opp_overlap 431534 AAGAACTCTGAAAAA GGCGCC TATAT GGCGCC TTTTTTGTTGCCCGT Shew_0382 431735 - 432505 + | nuclease Shew_0383 432685 - 433932 + | malate dehydrogenase TERM 408 433934 - 433991 + F 76 -10.2 -3.37344 | gap 2, opp_overlap 433949 433952 433957, overlap 433957 ACTACATGGCCTAAT CGGCGATGGTAATGATAAGAAAAGGGCC TCAG GGCCCTTTT-TTATTG-TGCCATTACCG CTTTATTTGTATGGT TERM 409 433975 - 433952 - f 75 -9.6 -3.51825 | opp_overlap 433934 433957, overlap 433949 433957 CGATGGTAATGATAA GAAAAGGGCC TCAG GGCCCTTTTT TATTGTGCCATTACC TERM 410 433970 - 433957 - f 91 -9.5 -4.84492 | opp_overlap 433934 433957, overlap 433952 433949 GTAATGATAAGAAAA GGGCC TCAG GGCCC TTTTTTATTGTGCCA TERM 411 433957 - 433970 + F 100 -9.5 -5.55769 | opp_overlap 433957 433952 433949, overlap 433934 GTAATGATAAGAAAA GGGCC TCAG GGCCC TTTTTTATTGTGCCA Shew_0384 434107 - 436017 + | regulatory protein CsrD Shew_0385 436254 - 437132 + | biogenesis protein MshI TERM 412 437218 - 437231 + G 71 -6.7 -4.24745 | GGCGCCTACTACAGC TAGGC TTCG GCCTA TTTGTCTTGCTGCTG Shew_0386 437133 - 437738 + | fimbrial assembly family protein Shew_0387 437735 - 438391 + | MSHA biogenesis protein MshJ Shew_0388 438372 - 438698 + | MSHA biogenesis protein MshK Shew_0389 438699 - 440390 + | pilus (MSHA type) biogenesis protein MshL Shew_0390 440395 - 441300 + | MSHA biogenesis protein MshM TERM 413 441598 - 441579 - g 78 -4.2 -4.85599 | overlap 441581 CCGAGCGTAGAAAAA GTCGCTTC GAAT GAAACGGC ACTGGCAGCAGATGA Shew_0391 441297 - 442457 + | TPR repeat-containing protein Shew_0392 442454 - 444214 + | type II secretion system protein E Shew_0393 444217 - 445434 + | type II secretion system protein Shew_0394 445467 - 445958 + | hypothetical protein Shew_0395 446032 - 446667 + | methylation site containing protein Shew_0396 446757 - 447266 + | methylation site containing protein Shew_0397 447281 - 447772 + | methylation site containing protein TERM 414 447792 - 447808 + F 100 -13.7 -5.4251 | opp_overlap 447792 TTAGTACTATCTAAA GGCCTGC AAT GCAGGCC TTTTTTGTCTGTGGC TERM 415 447808 - 447792 - f 100 -13.7 -3.69323 | opp_overlap 447792 TTAGTACTATCTAAA GGCCTGC AAT GCAGGCC TTTTTTGTCTGTGGC Shew_0398 447919 - 448368 + | MSHA pilin protein MshC Shew_0399 448358 - 448909 + | methylation site containing protein Shew_0400 448909 - 449706 + | methylation site containing protein TERM 416 449811 - 449793 - g 70 -11 -3.01712 | CGGCGCTCGTCAATA TCGTCAGC GAT GCCGACGA GGGGGTAAACCTGGA Shew_0401 449696 - 450133 + | MSHA biogenesis protein MshP TERM 417 451416 - 451429 + G 75 -5.9 -4.67038 | overlap 451417 AGCGATAGCTTTACC TCGGC GCCC GCCGG TTTTCATTTTGCCAA Shew_0402 450126 - 452828 + | MSHA biogenesis protein MshQ TERM 418 453245 - 453228 - g 71 -8.3 -3.90291 | opp_overlap 453228, overlap 453230 ATTCGTCCAATGAAA GACGGCG TGAT CGCCGAC TTCTATGTGACCGAG TERM 419 453243 - 453230 - g 70 -9.5 -3.54146 | opp_overlap 453228, overlap 453228 TCGTCCAATGAAAGA CGGCG TGAT CGCCG ACTTCTATGTGACCG Shew_0403 452994 - 454043 + | cell shape determining protein MreB TERM 420 454424 - 454402 - g 71 -8.4 -3.8917 | overlap 454405 GGCCAAGCAGAACAA GCAGCTGCTG CGG CAGCAACTCC TGATGAGCGAGCGTC Shew_0404 454178 - 455059 + | rod shape-determining protein MreC Shew_0405 455056 - 455544 + | rod shape-determining protein MreD Shew_0406 455544 - 456134 + | maf protein TERM 421 456203 - 456182 - f 74 -8.1 -4.08692 | gap 1, opp_overlap 456182 456186 TAAGTTGTTCTAAAA TTAACGGTCC TTA GG-CCGTTAA TGCATTAATCATATT Shew_0407 456232 - 457734 + | ribonuclease G TERM 422 458671 - 458648 - gf 74 -9.6 -3.29109 | gap 1, overlap 458663 AAAATTTGAGATTAA GGCTGGCCAGC TAA ACTGGC-AGCC GCAGGTCTCGGGCTG Shew_0408 457734 - 462044 + | hypothetical protein Shew_0409 461968 - 462798 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 423 462825 - 462804 - f 78 -5.8 -4.91357 | overlap 462806 AAAGAGATAATAAAA TCGCGCCT TCATGC AGGCGCCA AAGAGAGAAAATTAA Shew_0410 462840 - 464288 + | peptidase U62, modulator of DNA gyrase Shew_0411 464481 - 465884 + | outer membrane efflux protein Shew_0412 465874 - 466845 + | secretion protein HlyD family protein Shew_0413 466858 - 468030 + | ABC-2 type transporter TERM 424 468091 - 468111 + G 70 -9.7 -3.42482 | opp_overlap 468080, overlap 468080 468077 468089 ACAAGGCGATCGCCA TCACCCTGT TTG GCGGGGTGA TCTTCTATTCGGTAC Shew_0414 468027 - 469172 + | ABC-2 type transporter TERM 425 469148 - 469194 + T 78 -10.2 -3.58343 | opp_overlap 469156 469162, overlap 469153 469155 469156 469160 469162 GCTGCGTCTCAGACT CGAGACAAGAAAAAGCCCGC ACTAGCG GCGGGCTGTTTCATCTTTCG TTTAAGGCTGGTGGC TERM 426 469186 - 469156 - T 85 -11.2 -3.51365 | opp_overlap 469156 469155 469153 469148 469160 469162, overlap 469162 TCAGACTCGAGACAA GAAAAAGCCCGC ACTAGCG GCGGGCTGTTTC ATCTTTCGTTTAAGG TERM 427 469156 - 469186 + T 77 -11.2 -2.7693 | opp_overlap 469156 469162, overlap 469155 469153 469148 469160 469162 TCAGACTCGAGACAA GAAAAAGCCCGC ACTAGCG GCGGGCTGTTTC ATCTTTCGTTTAAGG TERM 428 469162 - 469180 + T 72 -8.8 -3.59733 | opp_overlap 469156 469162, overlap 469160 469156 469155 469153 469148 TCGAGACAAGAAAAA GCCCGC ACTAGCG GCGGGC TGTTTCATCTTTCGT TERM 429 469180 - 469162 - T 95 -8.8 -5.24796 | opp_overlap 469162 469160 469156 469155 469153 469148, overlap 469156 TCGAGACAAGAAAAA GCCCGC ACTAGCG GCGGGC TGTTTCATCTTTCGT Shew_0415 469751 - 469209 - | hypothetical protein Shew_0416 469898 - 471238 + | peptidase U62, modulator of DNA gyrase TERM 430 471297 - 471280 - f 95 -12.7 -3.61178 | opp_overlap 471280 TTTAGCGACCTTAAA GCGAGCC CGAT GGCTCGC TTTTTTGTGCGTTAA TERM 431 471280 - 471297 + F 100 -12.7 -5.31456 | opp_overlap 471280 TTTAGCGACCTTAAA GCGAGCC CGAT GGCTCGC TTTTTTGTGCGTTAA Shew_0417 471407 - 471754 + | ArsR family transcriptional regulator TERM 432 471830 - 471844 + G 72 -10 -3.62096 | GTCGGCCTGGGTTAT CTGCTG CCG CAGCAG TTTGCCCTGATCGCC Shew_0418 471758 - 472792 + | arsenical-resistance protein Shew_0419 472828 - 473838 + | glyceraldehyde-3-phosphate dehydrogenase Shew_0420 473839 - 475071 + | major facilitator transporter TERM 433 475209 - 475224 + F 70 -9 -3.24188 | TAGTGACTCTAGGTT CAAGCG TGAC CGCTTG TTAATAGTAATCTGA Shew_0421 475257 - 475505 + | phage shock protein C, PspC TERM 434 475511 - 475487 - T 83 -10.8 -3.65351 | opp_overlap 475473 TCAGTTGCAGCGAAA GGCCAACCAA GCTCG TTGATTGGCC GATCCTGCACCTATG Shew_0422 476057 - 475572 - | hypothetical protein Shew_0423 476135 - 476557 + | MerR family transcriptional regulator TERM 435 476667 - 476683 + F 71 -5.1 -4.51777 | TTGTTAACAATCGCT GCTTTCA TTT TGAACGC TTTTCGTTGTACTCT Shew_0424 476762 - 478135 + | amino acid carrier protein TERM 436 478173 - 478188 + T 100 -11.8 -5.64274 | opp_overlap 478173 TGTTGAATTGAAGAA GCGCCC AAAA GGGCGC TTTTTTTGTACCTCA TERM 437 478188 - 478173 - T 93 -11.8 -3.73068 | opp_overlap 478173 TGTTGAATTGAAGAA GCGCCC AAAA GGGCGC TTTTTTTGTACCTCA Shew_0425 479313 - 478213 - | ABC-2 type transporter Shew_0426 480322 - 479300 - | ABC transporter-related protein Shew_0427 481275 - 480322 - | hypothetical protein TERM 438 481476 - 481446 - R 93 -11.8 -3.8377 | overlap 481420 AAGGTCGAGAGCAAA CGCCTGCATGGAGC CTG GCCCCATGCAGTGG TCGCGCGAAGGAGGC Shew_0428 481679 - 481506 - | hypothetical protein TERM 439 481713 - 481702 - R 70 -5.8 -4.41348 | opp_overlap 481702 TCCTCGTCAAATAAA GTGC TTGT GCAC TCATTTGGTGCCGCT TERM 440 481995 - 481966 - R 100 -13.1 -3.7732 | gap 1, opp_overlap 481966 TTTCTAGAGCAATAA TGAGTTGCCAGCTA AAT TAG-TGGCAACTCA TTTAAATTTAGATCA TERM 441 481966 - 481995 + r 100 -13.1 -3.85909 | gap 1, opp_overlap 481966 TTTCTAGAGCAATAA TGAGTTGCCAGCTA AAT TAG-TGGCAACTCA TTTAAATTTAGATCA Shew_0429 482700 - 482008 - | hypothetical protein TERM 442 482914 - 482900 - R 100 -7.1 -5.60993 | opp_overlap 482900 GGGTGCATAAAAAAA CCTCC ATGAA GGAGG TTTTTTCGACGGATT TERM 443 482900 - 482914 + r 84 -7.1 -5.01732 | opp_overlap 482900 GGGTGCATAAAAAAA CCTCC ATGAA GGAGG TTTTTTCGACGGATT Shew_0430 483212 - 482940 - | histone family protein DNA-binding protein Shew_0431 483877 - 483467 - | hypothetical protein TERM 444 484019 - 484037 + H 70 -10.2 -2.53876 | opp_overlap 484018 484019 GGCTAAATTGCAAAG GCCCTGCT GCC AGCCGGGC TGGCTTAGGGTAAGA TERM 445 484037 - 484019 - H 71 -10.2 -2.82668 | opp_overlap 484019, overlap 484018 GGCTAAATTGCAAAG GCCCTGCT GCC AGCCGGGC TGGCTTAGGGTAAGA TERM 446 484651 - 484625 - g 100 -10.9 -5.4505 | opp_overlap 484625 484646 484648 TCGCCCAAGAAAAAA CAGCTGAAGGC GACTT ACCCTCAGCTG TTTCAGCTATTTCCT Shew_0432 484163 - 484672 + | hypothetical protein Shew_0433 485083 - 484694 - | hypothetical protein TERM 447 485152 - 485132 - R 90 -4.7 -5.4756 | overlap 485146 AAGCTGAATAAAAAA CGAACAAAT CAA ATTGGCTCG CTGAGCGATGAAAGG Shew_0434 485487 - 485176 - | hypothetical protein TERM 448 485633 - 485616 - H 71 -9.9 -3.07051 | opp_overlap 485613, overlap 485613 CCAATAAGTAAATGA TGGCGAA AAGA TTCGCCA GGATTTTGCATTAAG Shew_0435 485735 - 486256 + | hypothetical protein Shew_0436 488043 - 486271 - | diguanylate cyclase/phosphodiesterase TERM 449 486331 - 486363 + g 100 -11.4 -5.40072 | opp_overlap 486331 GGGCGCGGGCGTAAA CAGGCTAAAGCC ATTCAATGC GGCTTTGGCCTG TTTTTTTGCCGCCGC TERM 450 486363 - 486331 - G 70 -9.9 -3.53012 | opp_overlap 486331 GGGCGCGGGCGTAAA CAGGCTAAAGCCA TTCAATG CGGCTTTGGCCTG TTTTTTTGCCGCCGC TERM 451 486470 - 486458 - G 71 -9.1 -3.74251 | opp_overlap 486458 486462 CACAGGCTGATTAAA GGGTG GGC CACCC TCTGTCCCTGTCTGT Shew_0437 488488 - 488177 - | hypothetical protein TERM 452 488691 - 488703 + G 76 -6.9 -4.58395 | overlap 488692 TGGGATCGATTCATA TCGGC CAG GCCGG TTTTTACCCCATGGC Shew_0438 488537 - 489421 + | GumN family protein TERM 453 489514 - 489492 - f 81 -12.1 -2.99319 | AACCTTGGAGAGATA TCGATGGAC GCTAA GTCCATCGA CGCAGGGAGGCAAGA Shew_0439 489529 - 490161 + | CheD, stimulates methylation of MCP proteins Shew_0440 491024 - 490170 - | methyltransferase type 12 Shew_0441 491155 - 491994 + | dehydratase TERM 454 492074 - 492103 + T 72 -10.2 -2.97653 | gap 1, opp_overlap 492074 492081, overlap 492081 GTTTTGAGATGAATA GAGAAAAGCCAGC TGATT GCTGGCTTTT-TC GTTTCTGATGCAGAT TERM 455 492103 - 492074 - T 74 -10.2 -3.19602 | gap 1, opp_overlap 492074 492081, overlap 492081 GTTTTGAGATGAATA GAGAAAAGCCAGC TGATT GCTGGCTTTT-TC GTTTCTGATGCAGAT TERM 456 492081 - 492097 + T 93 -9.4 -5.05505 | opp_overlap 492074 492081, overlap 492074 GATGAATAGAGAAAA GCCAGC TGATT GCTGGC TTTTTCGTTTCTGAT TERM 457 492097 - 492081 - T 91 -9.4 -4.6955 | opp_overlap 492081 492074, overlap 492074 GATGAATAGAGAAAA GCCAGC TGATT GCTGGC TTTTTCGTTTCTGAT TERM 458 492107 - 492117 + T 70 -5.4 -4.30014 | GCTGGCTTTTTCGTT TCTG ATG CAGA TTTTAGCTTCCTAAG Shew_0442 493018 - 492128 - | aldo/keto reductase Shew_0443 493192 - 494886 + | formate--tetrahydrofolate ligase TERM 459 494942 - 494923 - T 100 -15 -5.1104 | opp_overlap 494923 AAATAGATAGAAAAA GCGCCTGC AGTT GCAGGCGC TTTTTTGTTGATGAC TERM 460 494923 - 494942 + T 100 -15 -5.5112 | opp_overlap 494923 AAATAGATAGAAAAA GCGCCTGC AGTT GCAGGCGC TTTTTTGTTGATGAC Shew_0444 496653 - 495031 - | MscS mechanosensitive ion channel TERM 461 495258 - 495280 + g 71 -9 -3.71149 | overlap 495259 GATGCTCGTCGACTA TGCCGCGCAG CAC CTGCTCGGCC TTCTCTATGTTGTCG TERM 462 495259 - 495279 + g 74 -12.5 -2.81966 | overlap 495258 ATGCTCGTCGACTAT GCCGCGCAG CAC CTGCTCGGC CTTCTCTATGTTGTC Shew_0445 496778 - 497113 + | hypothetical protein Shew_0446 497660 - 497920 + | hypothetical protein TERM 463 498015 - 498028 + G 70 -9.5 -3.38786 | GATGAATTTCAATGC CCGCC TGTC GGCGG TTGCTCTTGCCTGTG Shew_0447 497998 - 499203 + | hypothetical protein Shew_0448 499187 - 500098 + | periplasmic solute binding protein TERM 464 500112 - 500134 + F 100 -18.4 -3.85159 | AGCCTGGTTTAGATC CGGCGCCCTC TTT GGGGGCGCCG TTGTTCGCTTTTTGG Shew_0449 500159 - 500950 + | ABC-3 protein TERM 465 500985 - 501014 + F 100 -9.2 -5.4505 | gap 1 GCACTTGTGAGTTGA GCGGGTAGGGGGC AACAG GCACCC-GCCCGC TTTTTTCTTAGCAGC Shew_0450 501186 - 501920 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase Shew_0451 501945 - 502352 + | hypothetical protein TERM 466 502375 - 502404 + T 86 -13.1 -2.99319 | gap 1, opp_overlap 502381, overlap 502381 GTATCTCGCATCGAG C-AAAAAGCCCATC ATA GATGGGCTTTTTCG TATCTGTCACGGCTT TERM 467 502381 - 502397 + T 100 -12.3 -4.86133 | opp_overlap 502381, overlap 502375 CGCATCGAGCAAAAA GCCCATC ATA GATGGGC TTTTTCGTATCTGTC TERM 468 502397 - 502381 - T 100 -12.3 -4.7497 | opp_overlap 502375 502381 CGCATCGAGCAAAAA GCCCATC ATA GATGGGC TTTTTCGTATCTGTC Shew_0452 503401 - 502430 - | diguanylate cyclase Shew_0453 504410 - 503415 - | response regulator receiver protein TERM 469 503824 - 503812 - G 81 -9.1 -4.36914 | CCTGCGCCGATAAAA CCCTG GCA CAGGG CCGATACCGTGCTGT Shew_0454 504816 - 505625 + | enoyl-CoA hydratase Shew_0455 505791 - 506294 + | hypothetical protein Shew_0456 507226 - 506342 - | hypothetical protein TERM 470 507335 - 507307 - R 100 -14.6 -3.88601 | overlap 507308 TAAAATGCAGAAGAA GCTGGCACCGAC TAGAG GTCGGTGCCAGT GGAAGAGGTGTAGCG TERM 471 507334 - 507308 - R 100 -18.1 -2.92076 | overlap 507307 AAAATGCAGAAGAAG CTGGCACCGAC TAGAG GTCGGTGCCAG TGGAAGAGGTGTAGC Shew_0457 510268 - 507362 - | ATP-dependent helicase HepA TERM 472 509468 - 509482 + g 91 -11.4 -4.44667 | opp_overlap 509468 CCAGTCGGCATCCAA CGCCTG GTC CAGGCG TTTCTTCTTACGCAG TERM 473 509482 - 509468 - G 71 -11.4 -3.05816 | opp_overlap 509468 CCAGTCGGCATCCAA CGCCTG GTC CAGGCG TTTCTTCTTACGCAG Shew_0458 510634 - 512028 + | PhoH family protein TERM 474 512056 - 512072 + F 72 -5.8 -4.54047 | opp_overlap 512056 CCACCGACGGCAAAA GGCTCC CTGGC GGAGTC TTTTGTCTAAAGTAA Shew_0459 512269 - 515961 + | PAS/PAC sensor hybrid histidine kinase TERM 475 515996 - 516009 + F 100 -9.5 -5.29782 | opp_overlap 515996 TGTGCGAGAACAGAA GGGGC CCTG GCCCC TTTTTTGTGGCTGTC TERM 476 516009 - 515996 - f 79 -9.5 -3.7511 | opp_overlap 515996 TGTGCGAGAACAGAA GGGGC CCTG GCCCC TTTTTTGTGGCTGTC Shew_0460 516184 - 518583 + | hypothetical protein TERM 477 518605 - 518621 + T 100 -15.1 -5.34555 | opp_overlap 518605 TTACATTAGCTAAAA GCCCCGC ATC GCGGGGC TTTTTTATGGTCTAA TERM 478 518621 - 518605 - T 100 -15.1 -4.22652 | opp_overlap 518605 TTACATTAGCTAAAA GCCCCGC ATC GCGGGGC TTTTTTATGGTCTAA Shew_0461 519195 - 518656 - | hypothetical protein Shew_0462 519508 - 519813 + | hypothetical protein TERM 479 519834 - 519850 + T 100 -9.4 -5.65177 | TTTTGATCTTGTGAA GGAGCC GCTTA GGCTCC TTTTTTTATGGCTGT Shew_0463 520315 - 519932 - | hypothetical protein Shew_0464 520751 - 520368 - | hypothetical protein TERM 480 520896 - 520877 - R 100 -15 -5.63103 | TGTGAAGCAAAAAAA CCACCGCC TCGG GGCGGTGG TCAGCAGGTGAAATC Shew_0465 521322 - 520912 - | hypothetical protein TERM 481 521492 - 521471 - R 100 -13.7 -5.38326 | overlap 521465 TGAACCAAAGAAAAA GCCCGACTC TCTC GAGCCGGGC ACGCCGGGAAGCGAA Shew_0466 524593 - 521519 - | acriflavin resistance protein TERM 482 522077 - 522094 + g 72 -6.3 -4.42386 | gap 1 GGGTAGGCTGATGGC CT-CGACC TTA GGTCGCAG TTTTCTAAATACCGA Shew_0467 525679 - 524597 - | RND family efflux transporter MFP subunit Shew_0468 525876 - 526820 + | LysR family transcriptional regulator Shew_0469 527494 - 526823 - | pentapeptide repeat-containing protein Shew_0470 528878 - 527511 - | MATE efflux family protein TERM 483 529022 - 529043 + H 70 -10.1 -2.60002 | overlap 529021 529020 TATATCGAACATCCC GCGGCGAAA GCTA TCTCGCCGC ACTTTTAATTTGATA groES 529106 - 529396 + | co-chaperonin GroES groEL 529453 - 531102 + | chaperonin GroEL TERM 484 531286 - 531251 - T 91 -10.5 -4.78149 | opp_overlap 531256, overlap 531256 CTTAGAACGTAAAAA TGAAAGCCCCGATAC TTAACC GTATCGGGGCTTTTT CATATGGATATGATT TERM 485 531281 - 531256 - T 100 -14.8 -4.34557 | opp_overlap 531256, overlap 531251 AACGTAAAAATGAAA GCCCCGATAC TTAACC GTATCGGGGC TTTTTCATATGGATA TERM 486 531256 - 531281 + T 100 -14.8 -4.81551 | opp_overlap 531256 531251 AACGTAAAAATGAAA GCCCCGATAC TTAACC GTATCGGGGC TTTTTCATATGGATA TERM 487 531500 - 531517 + T 83 -4.1 -5.40072 | AAAGAATAGAAGCCG CGGTATC GTCA GATAGCG TTTTTTTCAAGGCCA Shew_0473 532156 - 531629 - | hypothetical protein Shew_0474 532500 - 532153 - | hypothetical protein Shew_0475 533653 - 532487 - | hypothetical protein Shew_0476 534667 - 533870 - | hypothetical protein Shew_0477 535280 - 534699 - | hypothetical protein TERM 488 534814 - 534800 - G 82 -8.6 -4.60041 | opp_overlap 534797, overlap 534765 ACTTATTTTCAAAAA TTGCTG CCT CAGCAA TGATGATTAATAGGA Shew_0478 535900 - 536136 + | XRE family transcriptional regulator TERM 489 536439 - 536450 + G 72 -3.6 -4.77567 | overlap 536449 GGCCTAGATACTGCG GGTG CCAT CGCC TTTTCTTCTAAAGGT Shew_0479 536139 - 537440 + | HipA domain-containing protein TERM 490 537462 - 537472 + F 80 -6.8 -4.81083 | overlap 537454 ACAGGCCATCGGCAT CAGC CGA GCTG TTTTTAATGATTAGG TERM 491 538122 - 538147 + G 74 -11.1 -3.33696 | gap 1, opp_overlap 538112, overlap 538128 ATCGAGGTGCCCAAG GCGCAGCGCCAC GGC GAGGCGCTG-GC TTGCTTCACGGGGGC TERM 492 538316 - 538301 - g 71 -11.8 -2.78384 | opp_overlap 538294 TCTGCTGGCAGCAGA GGCCGG ATTG CCGGCC GCTCAGTATCGTCTG Shew_0480 537510 - 538568 + | Sel1 domain-containing protein Shew_0481 538703 - 539107 + | hypothetical protein Shew_0482 539397 - 540563 + | hypothetical protein Shew_0483 540566 - 541378 + | hypothetical protein TERM 493 541477 - 541437 - T 72 -6.9 -4.20025 | overlap 541424 AACGCCTAACATAAA CGCTCAAGATAAACGCCCA AGA TAAACGCCTAGCTTAAGCG ACTAATTTAACCCAA Shew_0484 542771 - 541500 - | hypothetical protein Shew_0485 543425 - 542808 - | cold-shock DNA-binding domain-containing protein Shew_0486 544534 - 543518 - | permease Shew_0487 544810 - 544562 - | redox-active disulfide protein 2 Shew_0488 545225 - 544821 - | ArsR family transcriptional regulator TERM 494 544995 - 545018 + g 72 -10.2 -3.53811 | ACTGGCGACTATGCC CGCCTGCCGC AGTA GCGCCAGGTG TTTGGAGACGGTGGA Shew_0489 545503 - 545931 + | hypothetical protein TERM 495 546697 - 546727 + G 76 -13.3 -2.85351 | gap 1, opp_overlap 546693 GCCCCTGAATATCGA GCTGCCACGCTCCT CCCA AGGTGCG-GGCAGC TATGATATCAGCCCG Shew_0490 546050 - 548077 + | peptidase S9 prolyl oligopeptidase TERM 496 548113 - 548138 + T 100 -14.1 -5.36441 | gap 1, opp_overlap 548113 GTCAGCAATAAAAAA GGCTGC-CCCAA TTA TTGGGTGCAGCC TTTTTTGTATAACAA TERM 497 548138 - 548113 - T 100 -14.1 -5.5112 | gap 1, opp_overlap 548113 GTCAGCAATAAAAAA GGCTGC-CCCAA TTA TTGGGTGCAGCC TTTTTTGTATAACAA Shew_0491 548413 - 548159 - | hypothetical protein Shew_0492 550135 - 548543 - | methyl-accepting chemotaxis sensory transducer TERM 498 548602 - 548616 + g 70 -11.4 -3.03124 | CCTCCTTCTGGATGT GCTGGC TGA GCCAGC TCTTCAGAAATGCCA TERM 499 550253 - 550217 - R 91 -8.6 -5.06816 | opp_overlap 550218 550221, overlap 550218 ATCCGCTAATAAAAA CCGCTCGGCCCGGC GCTGATTTA GCCGGGCCGAATGT TGGTCGAGTGCGGGC TERM 500 550252 - 550218 - R 89 -12.1 -3.63367 | opp_overlap 550218 550221, overlap 550217 TCCGCTAATAAAAAC CGCTCGGCCCGGC GCTGATTTA GCCGGGCCGAATG TTGGTCGAGTGCGGG TERM 501 550218 - 550252 + r 83 -12.1 -3.16564 | opp_overlap 550218 550217, overlap 550221 TCCGCTAATAAAAAC CGCTCGGCCCGGC GCTGATTTA GCCGGGCCGAATG TTGGTCGAGTGCGGG Shew_0493 550803 - 550297 - | hypothetical protein Shew_0494 551047 - 551799 + | hypothetical protein TERM 502 551861 - 551890 + F 100 -20.1 -4.90079 | gap 1 TGTCGGCGATCTCCG CCTGGGCC-CACCC TTA GGGTGTGGCCCAGG TTTTCTTCTTCCCCT TERM 503 552052 - 552015 - g 70 -3.3 -4.82901 | gap 1, opp_overlap 552018, overlap 552017 552018 TGCTTGCCAGAAAAA GAGGCCCCA-TGACCGCG ATG CGCCGTCAGCGAGGCTTT AGCGGAATGCAGATC Shew_0495 551984 - 552685 + | hypothetical protein TERM 504 552742 - 552724 - T 77 -4.5 -5.10933 | opp_overlap 552724 GGAGGCAAAATAAAA GCCGG TGATGAGGG CCGGC TTTCGATGCAGTGGT TERM 505 552983 - 553010 + T 87 -11.2 -3.62591 | overlap 552984 552986 TTTGTCGACTTGTTG TGATCGCCGCCG CGCG CGGCAGCGATCC TTTAAGCATTCTGGC TERM 506 552984 - 553009 + T 89 -14.7 -2.77233 | overlap 552983 552986 TTGTCGACTTGTTGT GATCGCCGCCG CGCG CGGCAGCGATC CTTTAAGCATTCTGG TERM 507 552986 - 553007 + T 78 -11.5 -2.92935 | overlap 552984 552983 GTCGACTTGTTGTGA TCGCCGCCG CGCG CGGCAGCGA TCCTTTAAGCATTCT Shew_0496 554413 - 553040 - | amino acid carrier protein TERM 508 554924 - 554903 - H 91 -12.9 -3.18274 | TTCATCCGAACGGAA TCCGGGGGC GGCA GCCCCCGGG GCCGTATAGCATGCG Shew_0497 555306 - 557003 + | putative sulfate transporter YchM Shew_0498 557638 - 557009 - | flavoprotein oxygenase Shew_0499 557784 - 559136 + | Xaa-Pro aminopeptidase family enzyme TERM 509 559146 - 559158 + F 71 -2 -5.07486 | opp_overlap 559146 AAGTGAGCGGACTAA TACA TTTGT TGTA TTTTTGTTGACACTC TERM 510 559181 - 559197 + F 79 -2.9 -5.33985 | TGACACTCGATTGGC CTGGCAG TAG CTTCTAG TTTCTTTTTTTTGAG TERM 511 559366 - 559345 - g 72 -10.1 -3.6215 | opp_overlap 559338 GTAAGCCAGTTTAAA CCTGAGGCG ACGC CGACTCAGG AGCAAACTTTCGTCT Shew_0500 559225 - 560241 + | hypothetical protein TERM 512 560286 - 560309 + F 100 -9.6 -5.75538 | opp_overlap 560286 CCTTGCCTCTCATAA GCGAATCACT CTTA GGTGGTTCGC TTTTTGTTTTTTAGC TERM 513 560414 - 560387 - f 79 -12.2 -2.58427 | overlap 560390 AAGATCTCCCACAAT TAAGTTATTGGC GTGA GCCAATAACTCA TCAACATTTAATCGA TERM 514 560411 - 560390 - f 88 -11.7 -3.44325 | overlap 560387 ATCTCCCACAATTAA GTTATTGGC GTGA GCCAATAAC TCATCAACATTTAAT Shew_0501 560444 - 560728 + | hypothetical protein Shew_0502 560738 - 561265 + | hypothetical protein Shew_0503 561612 - 561271 - | thioredoxin domain-containing protein TERM 515 562253 - 562267 + G 70 -10 -3.51235 | overlap 562227 562252 CGGTGTGGCTGCCCG GGCTGT TTG ACAGCC TCTTCTTGCTTCTGA Shew_0504 561877 - 563088 + | NnrS family protein Shew_0505 563145 - 564503 + | nitrite reductase (cytochrome; ammonia-forming) TERM 516 564561 - 564535 - T 100 -13.6 -4.43477 | opp_overlap 564536, overlap 564536 TTTACGTAATTAAAA GCGCCGACCTGG ATA CCGGGTCGGCGT TTTTTGTTGCTAGCG TERM 517 564560 - 564536 - T 100 -17.1 -3.25604 | opp_overlap 564536, overlap 564535 TTACGTAATTAAAAG CGCCGACCTGG ATA CCGGGTCGGCG TTTTTTGTTGCTAGC TERM 518 564536 - 564560 + T 100 -19.3 -5.5112 | opp_overlap 564536 564535 TTACGTAATTAAAAG CGCCGACCTGG ATA CCGGGTCGGCG TTTTTTGTTGCTAGC Shew_0506 565488 - 564571 - | LysR family transcriptional regulator TERM 519 565472 - 565496 + g 77 -2.9 -5.03715 | opp_overlap 565490, overlap 565474 ATCGCCAGTTGCAGA TCTTTGAGATG ATA CATATCAAAAA TTTTTTGAAAATGAT Shew_0507 565616 - 566707 + | NADH:flavin oxidoreductase/NADH oxidase Shew_0508 567938 - 566781 - | xanthine/uracil/vitamin C permease Shew_0509 568204 - 568629 + | hypothetical protein TERM 520 568670 - 568655 - T 93 -11.8 -3.85165 | opp_overlap 568655 TAGGTTAAATGCAAA GGCCCG CGAG CGGGCC TTTCTTATGCCTTAA TERM 521 568655 - 568670 + T 95 -11.8 -4.35604 | opp_overlap 568655 TAGGTTAAATGCAAA GGCCCG CGAG CGGGCC TTTCTTATGCCTTAA Shew_0510 577120 - 568682 - | putative outer membrane adhesin like proteiin TERM 522 570236 - 570283 + g 81 -15 -2.87132 | gap 1 TGCTATGCTTCTGCC CGCCTCGACGGCATTG-ACCAGA TTG TCTGGTGTGATGGCGTCGAGTCG TATCTGGGGGAGCGG Shew_0511 578455 - 577130 - | HlyD family type I secretion membrane fusion protein Shew_0512 580547 - 578448 - | ABC transporter-related protein Shew_0513 582205 - 580547 - | ABC transporter-related protein TERM 523 582431 - 582452 + r 80 -10.1 -3.72576 | opp_overlap 582431 GATGGGCAAAAAAAA GAGGCCTGG TGGA CCAGACCTC TTTGCTGCAGGGAGA TERM 524 582452 - 582431 - R 100 -12.3 -5.76949 | opp_overlap 582431 GATGGGCAAAAAAAA GAGGCCTGG TGGA CCAGACCTC TTTGCTGCAGGGAGA TERM 525 582494 - 582508 + r 71 -4.9 -4.58786 | GATTACAAATTACTT GGCGT GTTTA GCGCC TTTCTTGTTCTTCAT Shew_0514 583894 - 582488 - | cytochrome c, putative TERM 526 583904 - 583930 + r 70 -10.1 -2.60244 | gap 1, overlap 583900 TTTCATTGTCTGTTC CCTACCCCCGGC CTAG GCCGGGGG-AGA TAGCTTAGTTAGAAG Shew_0515 585651 - 583939 - | hypothetical protein TERM 527 585096 - 585112 + g 76 -3.6 -4.88736 | CGAAGACTTGAACAC CTGTGG AGTCA CCCCAG TTTTTGTACATGCTG Shew_0516 586045 - 585716 - | cytochrome c family protein TERM 528 586194 - 586184 - H 74 -4 -4.91712 | TCTAATTGATAAAAA TATC ATG GATA AAAATCTAATGAATA Shew_0517 586558 - 587754 + | putative plasmid transfer protein TERM 529 587805 - 587774 - T 95 -12.3 -3.61517 | opp_overlap 587780, overlap 587775 587780 ATGTTTCTCTAAGAA TGAAAAGGCCGGC TGTGAT GCCGGCCTTCTCT TGAGCCTAGGTGTTA TERM 530 587804 - 587775 - T 100 -15.8 -2.76696 | opp_overlap 587780, overlap 587774 587780 TGTTTCTCTAAGAAT GAAAAGGCCGGC TGTGAT GCCGGCCTTCTC TTGAGCCTAGGTGTT TERM 531 587799 - 587780 - T 100 -12.1 -4.56133 | opp_overlap 587780, overlap 587775 587774 CTCTAAGAATGAAAA GGCCGGC TGTGAT GCCGGCC TTCTCTTGAGCCTAG TERM 532 587780 - 587799 + T 89 -12.1 -3.66784 | opp_overlap 587780 587775 587774 CTCTAAGAATGAAAA GGCCGGC TGTGAT GCCGGCC TTCTCTTGAGCCTAG Shew_0518 588558 - 587818 - | hypothetical protein TERM 533 588590 - 588616 + r 74 -10.8 -2.59686 | opp_overlap 588592, overlap 588586 588594 AAGGTTGAAAACTAA AAGAGGGACCGC CTA GCGATCCCTCTA TCGATTCGTGTGTGA TERM 534 588614 - 588592 - R 100 -15.6 -4.67038 | opp_overlap 588590 588586 588594 GGTTGAAAACTAAAA GAGGGACCGC CTA GCGATCCCTC TATCGATTCGTGTGT TERM 535 588594 - 588612 + r 72 -10.2 -2.96152 | opp_overlap 588592, overlap 588590 588586 TTGAAAACTAAAAGA GGGACCGC CTA GCGATCCC TCTATCGATTCGTGT Shew_0519 588951 - 588637 - | transcriptional repressor protein MetJ TERM 536 590102 - 590114 + G 74 -4.8 -4.68424 | opp_overlap 590092 590091, overlap 590092 AAAAGGTGGCGAATC GGCA CTCGT TGCC TTTTTAGATGCGTTA Shew_0520 589176 - 590342 + | O-succinylhomoserine (thiol)-lyase TERM 537 590949 - 590969 + G 75 -8.9 -4.08064 | overlap 590950 GGGCGATACCCTGCT GCTGGGCCG TAA CGGCTCAGA TTTTAGCGCCACCTT TERM 538 590950 - 590968 + G 73 -12.4 -3.04517 | overlap 590949 GGCGATACCCTGCTG CTGGGCCG TAA CGGCTCAG ATTTTAGCGCCACCT metL 590362 - 592755 + | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 539 592763 - 592782 + F 100 -10 -5.49809 | AAGAATAATCTAATG GGTCGATG CGTG CATCGGCC TTTTTTTACCCTTTA TERM 540 592829 - 592852 + F 82 -12.4 -2.80443 | overlap 592845 CGCTTTTTCAGCCTG TTTCGCCGGG GTCA CCCGGCGGGA TCTGCTCGCCTGTGC metF 593019 - 593909 + | 5,10-methylenetetrahydrofolate reductase TERM 541 593937 - 593958 + F 100 -13.7 -5.30686 | opp_overlap 593929 CAGAATAGACTTCTA GCCCCGCCT CAAT AGGTGGGGC TTTTTTATACCTATT Shew_0523 594034 - 594633 + | cytochrome c family protein Shew_0524 594644 - 595705 + | cytochrome c, class I TERM 542 595732 - 595783 + F 77 -10.4 -3.48276 | gap 1, opp_overlap 595743, overlap 595737 595741 AAGCCTTAAGCTTGT TCCGCCAGAGACTGAGTGTTAAC GTTAACG GCTAACACTCAGTCTCTA-TGGA TTCTATGCGCACCAA TERM 543 595737 - 595779 + F 79 -12.2 -2.63079 | opp_overlap 595743, overlap 595732 595741 TTAAGCTTGTTCCGC CAGAGACTGAGTGTTAAC GTTAACG GCTAACACTCAGTCTCTA TGGATTCTATGCGCA TERM 544 595741 - 595775 + F 78 -11.6 -2.97425 | opp_overlap 595743, overlap 595737 595732 GCTTGTTCCGCCAGA GACTGAGTGTTAAC GTTAACG GCTAACACTCAGTC TCTATGGATTCTATG TERM 545 595773 - 595743 - f 75 -10.6 -2.87132 | opp_overlap 595741 595737 595732 TTGTTCCGCCAGAGA CTGAGTGTTAAC GTTAACG GCTAACACTCAG TCTCTATGGATTCTA Shew_0525 595779 - 596003 + | hypothetical protein Shew_0526 596035 - 596406 + | hypothetical protein TERM 546 596409 - 596439 + T 78 -10.7 -3.23393 | gap 1, opp_overlap 596409 596416, overlap 596409 596416 CGACGCCCTGTAAAA T-AAAAAAGAGGCG AATT CGCCTCTTTTTTCA TCTTATGAGCTAACG TERM 547 596409 - 596438 + T 81 -12.3 -2.53822 | opp_overlap 596409 596416, overlap 596409 596416 CGACGCCCTGTAAAA TAAAAAAGAGGCG AATT CGCCTCTTTTTTC ATCTTATGAGCTAAC TERM 548 596438 - 596409 - T 100 -12.3 -4.08216 | opp_overlap 596409 596409 596416, overlap 596416 CGACGCCCTGTAAAA TAAAAAAGAGGCG AATT CGCCTCTTTTTTC ATCTTATGAGCTAAC TERM 549 596416 - 596431 + T 100 -10.4 -5.30189 | opp_overlap 596409 596416, overlap 596409 596409 CTGTAAAATAAAAAA GAGGCG AATT CGCCTC TTTTTTCATCTTATG TERM 550 596431 - 596416 - T 100 -10.4 -5.79595 | opp_overlap 596416 596409 596409, overlap 596409 CTGTAAAATAAAAAA GAGGCG AATT CGCCTC TTTTTTCATCTTATG Shew_0527 597303 - 596449 - | Sel1 domain-containing protein Shew_0528 598222 - 597398 - | Sel1 domain-containing protein TERM 551 597491 - 597526 + g 74 -4.7 -4.72846 | opp_overlap 597479 ACATGCCCACAATTC GGCACAGGTTCTG CCTGCGATAT TGGATCCTGTGCC TTTTTCCGTATCTGG Shew_0529 599129 - 598302 - | Sel1 domain-containing protein TERM 552 600234 - 600246 + G 79 -9.1 -4.25283 | opp_overlap 600233 600234 ATCGGGTGCCAGAAG CGCTG CGC CAGCG TTTTCATCAGGCGAT Shew_0530 599363 - 600490 + | FAD dependent oxidoreductase TERM 553 600496 - 600511 + T 93 -10.4 -5.15969 | opp_overlap 600496 GACGCCATAAAAAAA GGAGCC GATA GGCTCC TTTTTTAAGTTCGCG TERM 554 600511 - 600496 - T 100 -10.4 -5.626 | opp_overlap 600496 GACGCCATAAAAAAA GGAGCC GATA GGCTCC TTTTTTAAGTTCGCG Shew_0531 602352 - 600553 - | DEAD/DEAH box helicase domain-containing protein TERM 555 601276 - 601294 + g 70 -11 -3.0094 | overlap 601278 GGTCGCACGCTCGAT GGTGCGCA GCA TGCGCATC TCTCTGTGGGTGACG TERM 556 602394 - 602380 - R 82 -10 -3.90112 | TGTGGTGTAACTAAA GTGCAG AGA CTGCAC CAAAAGATGTAAAAG Shew_0532 603628 - 602600 - | peptidase M28 TERM 557 603695 - 603714 + r 100 -13.6 -3.62046 | opp_overlap 603695 GAAGGAAACAAAAAA GCCAGCCT GTCG AGGCTGGC TTGTTAAGGCCGTCA TERM 558 603714 - 603695 - R 100 -13.6 -5.72053 | opp_overlap 603695 GAAGGAAACAAAAAA GCCAGCCT GTCG AGGCTGGC TTGTTAAGGCCGTCA Shew_0533 606586 - 603761 - | excinuclease ABC, A subunit Shew_0534 606789 - 608156 + | major facilitator transporter Shew_0535 608229 - 608891 + | single-strand binding protein TERM 559 608935 - 608920 - f 82 -10.4 -4.08064 | opp_overlap 608920 AATGTTTGCTTAAAA CCCTGC CTTG GCAGGG TTTTTCTTTTCTTAG TERM 560 608920 - 608935 + F 100 -10.4 -5.62288 | opp_overlap 608920 AATGTTTGCTTAAAA CCCTGC CTTG GCAGGG TTTTTCTTTTCTTAG Shew_0536 609087 - 610076 + | tRNA-dihydrouridine synthase A TERM 561 610114 - 610145 + F 100 -15.3 -3.72037 | opp_overlap 610120, overlap 610120 TGAACAAGATTATTG CAGAAAGCCGCTG ATACCA CAGCGGCTTTTTG TTGTCTGATTTTTAA TERM 562 610120 - 610139 + F 100 -10.7 -5.25699 | opp_overlap 610120, overlap 610114 AGATTATTGCAGAAA GCCGCTG ATACCA CAGCGGC TTTTTGTTGTCTGAT TERM 563 610139 - 610120 - f 86 -10.7 -3.90586 | opp_overlap 610120 610114 AGATTATTGCAGAAA GCCGCTG ATACCA CAGCGGC TTTTTGTTGTCTGAT TERM 564 610184 - 610163 - f 71 -10.3 -2.74144 | overlap 610162 GTCTGATTTTTAAAC TTTTCACCA AAGG TGGTGAAAA TTACCAGCCGGTAGT TERM 565 610194 - 610212 + F 71 -8.2 -3.79906 | opp_overlap 610186 TGAAAATTACCAGCC GGTAGTGA AAC TCACTATC TTCTTATCCAGCTGC Shew_0537 610364 - 610642 + | hypothetical protein Shew_0538 610824 - 611030 + | phage shock protein C, PspC TERM 566 611382 - 611418 + G 75 -5.7 -4.64048 | opp_overlap 611395, overlap 611383 CTGGCGGCCTGGGGC GTAGGTCAAGCTAGCCG GGT CGACTAGCCTGGCCCAA TTTCTTTATCTGCTC Shew_0539 611049 - 611408 + | hypothetical protein Shew_0540 612161 - 611424 - | enoyl-CoA hydratase/isomerase Shew_0541 612211 - 612678 + | hypothetical protein TERM 567 612720 - 612732 + G 76 -6.9 -4.53777 | opp_overlap 612709, overlap 612712 612719 GAAACGGGTCAGCCT GGCGG CCG CCGTC TTATTTTTGATTGGC Shew_0542 612691 - 613662 + | hypothetical protein Shew_0543 613667 - 614425 + | hypothetical protein TERM 568 614466 - 614452 - T 100 -11.4 -5.72616 | opp_overlap 614452 AGCGATATAAAAAAA CCGCCA TGA TGGCGG TTTTTTTGTGGCTAA TERM 569 614452 - 614466 + T 100 -11.4 -5.64274 | opp_overlap 614452 AGCGATATAAAAAAA CCGCCA TGA TGGCGG TTTTTTTGTGGCTAA tolC 615839 - 614493 - | outer membrane channel protein TERM 570 615857 - 615845 - H 75 -9.1 -3.65996 | opp_overlap 615843 615839 615850, overlap 615843 TTTTAGACATAAATA CTCCG AGG CGGAG CCATTTACTTAATAA TERM 571 615882 - 615913 + H 72 -8.8 -3.66178 | gap 1, opp_overlap 615883, overlap 615883 TAATAAAGTTAAGTG ATGCTTCAGCGCAAA TCA TTTGCGC-GAAGCGG TTTGCGCTTCCCGAC TERM 572 615912 - 615883 - H 70 -10.1 -2.59927 | gap 1, opp_overlap 615882 615883 AATAAAGTTAAGTGA TGCTTCAGCGCAAA TCA TTTGCGC-GAAGCG GTTTGCGCTTCCCGA TERM 573 615883 - 615912 + H 82 -12.3 -2.79492 | gap 1, opp_overlap 615883, overlap 615882 AATAAAGTTAAGTGA TGCTTCAGCGCAAA TCA TTTGCGC-GAAGCG GTTTGCGCTTCCCGA Shew_0545 616103 - 616711 + | ADP-ribose diphosphatase Shew_0546 616708 - 617154 + | hypothetical protein TERM 574 617223 - 617239 + G 70 -2.9 -4.77036 | CGTAAAGCTGGTCCA GGTGACG GAC CCTCATC TTTTTGCTGATCCCG Shew_0547 617164 - 618003 + | calcineurin phosphoesterase C-terminal domain-containing protein Shew_0548 618198 - 618776 + | hypothetical protein Shew_0549 618825 - 620711 + | DNA topoisomerase IV subunit B TERM 575 621219 - 621193 - g 80 -11.4 -3.82084 | opp_overlap 621186 621214 GGGTAAGACCAACAA GAGCCGCCGCGC CAT GCGCTTCGGCCC AGATGGTCGTCTCTA Shew_0550 620759 - 621925 + | L-sorbosone dehydrogenase, putative Shew_0551 621922 - 624189 + | DNA topoisomerase IV subunit A TERM 576 624213 - 624251 + T 81 -12.6 -2.66733 | opp_overlap 624225, overlap 624225 CAGACATAAAATCCG GATACAAAAAAAGCTGCC TTA GGCAGCTTTTTTGATGTC TGATGTAAGTTGGCC TERM 577 624225 - 624239 + T 100 -11.4 -5.24989 | opp_overlap 624225, overlap 624213 CCGGATACAAAAAAA GCTGCC TTA GGCAGC TTTTTTGATGTCTGA TERM 578 624239 - 624225 - T 100 -11.4 -5.71712 | opp_overlap 624225 624213 CCGGATACAAAAAAA GCTGCC TTA GGCAGC TTTTTTGATGTCTGA Shew_0552 624458 - 624267 - | BFD/(2Fe-2S)-binding domain-containing protein Shew_0553 625726 - 624800 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 579 626165 - 626145 - R 77 -3.1 -5.29782 | opp_overlap 626155, overlap 626146 626147 TACAGTGACAAAAAA TGGCAGAGG TGT CCACCGCTA GGGTGAACTTTGCTT Shew_0554 626928 - 626221 - | glycerophosphoryl diester phosphodiesterase Shew_0555 630110 - 626928 - | MscS mechanosensitive ion channel Shew_0556 631125 - 630235 - | hypothetical protein TERM 580 631079 - 631050 - G 70 -5.6 -4.37886 | gap 1, overlap 631051 TCAGCTTGGAGAAAA GGGCCGTACCACC AAACA GGAGG-ACGGCCA GATGCAGTTCGATTA Shew_0557 631994 - 631134 - | phosphatidylserine decarboxylase Shew_0558 633051 - 632038 - | ribosome-associated GTPase TERM 581 633183 - 633170 - H 100 -3.8 -5.63517 | GTCTTAAATAAAAAA GCCT GAATTT AGGC AAACACGCATTGATA Shew_0559 633209 - 633754 + | oligoribonuclease Shew_0560 635005 - 635460 + | hypothetical protein TERM 582 635539 - 635513 - f 100 -13.8 -3.33711 | opp_overlap 635519, overlap 635519 TAGTGAGAAACTTAA TAAAAAGGCGCC TTG GGCGCCTTTTTT CATTTATGCCGAGAC TERM 583 635533 - 635519 - f 100 -12.8 -5.16151 | opp_overlap 635519, overlap 635513 GAAACTTAATAAAAA GGCGCC TTG GGCGCC TTTTTTCATTTATGC TERM 584 635519 - 635533 + F 100 -12.8 -5.42514 | opp_overlap 635519 635513 GAAACTTAATAAAAA GGCGCC TTG GGCGCC TTTTTTCATTTATGC Shew_0561 635897 - 637375 + | carbohydrate kinase, YjeF-related protein Shew_0562 637476 - 637949 + | hypothetical protein Shew_0563 637936 - 639255 + | N-acetylmuramoyl-L-alanine amidase TERM 585 640432 - 640395 - g 70 -2.7 -4.70169 | overlap 640417 CGATACCGAAGAAAA CGCCTTATGGCT-TGCG AATGAA CGCCCAGCC-TATGGCG AGCGCGAAGCCAGTC Shew_0564 639265 - 641160 + | DNA mismatch repair protein MutL Shew_0565 641153 - 642079 + | tRNA delta(2)-isopentenylpyrophosphate transferase Shew_0566 642172 - 642450 + | RNA chaperone Hfq Shew_0567 642471 - 643769 + | GTP-binding protein, HSR1-related Shew_0568 643813 - 644955 + | HflK protein Shew_0569 644958 - 645836 + | HflC protein TERM 586 645864 - 645880 + F 100 -9.4 -5.3236 | opp_overlap 645864 ATTATTGAGATTAAA GCCCGA CGAGT TCGGGC TTTTTTATCGCTTAT TERM 587 645880 - 645864 - f 79 -9.4 -3.85092 | opp_overlap 645864 ATTATTGAGATTAAA GCCCGA CGAGT TCGGGC TTTTTTATCGCTTAT TERM 588 646104 - 646120 + F 83 -10.9 -3.61889 | overlap 646094 TTTGATTTTTGCGCT TTGGGGT AAA ACCCCAA TTTCAAAAATTTTTA Shew_0570 646171 - 646761 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Shew_0571 646761 - 647975 + | cytochrome b/b6 domain-containing protein Shew_0572 647975 - 648676 + | cytochrome c1 TERM 589 648714 - 648740 + F 100 -15.2 -5.25735 | opp_overlap 648718 ATTATCCGCATATTA TAAACGGGGGGC TTT GCCCCTCGTTTG TTTTTGCTTTTTTAG TERM 590 648736 - 648718 - f 91 -11.6 -4.0162 | opp_overlap 648714 TCCGCATATTATAAA CGGGGGGC TTT GCCCCTCG TTTGTTTTTGCTTTT sspA 648785 - 649414 + | stringent starvation protein A Shew_0574 649416 - 649874 + | ClpXP protease specificity-enhancing factor TERM 591 649915 - 649885 - f 83 -10.7 -3.6501 | gap 1, opp_overlap 649894, overlap 649886 649894 AATAACCAGCGCAAA CTAAAAAAACCAGC TTAG GCTGGTTTTTTT-G TGCCCGAGAAAAGAC TERM 592 649915 - 649886 - f 74 -10.9 -2.78283 | opp_overlap 649894, overlap 649885 649894 ATAACCAGCGCAAAC TAAAAAAACCAGC TTAG GCTGGTTTTTTTG TGCCCGAGAAAAGAC TERM 593 649894 - 649907 + F 100 -8.1 -5.60993 | opp_overlap 649885 649886 649894 CGCAAACTAAAAAAA CCAGC TTAG GCTGG TTTTTTTGTGCCCGA TERM 594 649907 - 649894 - f 100 -8.1 -5.72207 | opp_overlap 649894, overlap 649885 649886 CGCAAACTAAAAAAA CCAGC TTAG GCTGG TTTTTTTGTGCCCGA TERM 595 650047 - 650026 - f 71 -3.7 -4.82901 | gap 1 TCTGCGCCAGAAAAA TGCG-GCGTA ACT CACACCCGCA ACTCACACCCAATAT Shew_0575 650080 - 650667 + | glutamine amidotransferase of anthranilate synthase Shew_0576 650838 - 653324 + | peptidase S9 prolyl oligopeptidase TERM 596 653332 - 653349 + F 100 -12.7 -5.06414 | opp_overlap 653329 653326 TTAAATAACCGACCA GGGCCTC ATTC GAGGCCC TTTTTATTGCAAGGG Shew_0577 653435 - 654580 + | putative signal transduction protein argD 655195 - 656412 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 597 656425 - 656444 + F 95 -7.8 -5.36441 | opp_overlap 656425 TAAGCGACAGCATAA GCGCGG CATAACAA CCGCGC TTTTTTGTCTGAGAG TERM 598 656444 - 656425 - f 71 -8.5 -3.48288 | opp_overlap 656425 TAAGCGACAGCATAA GCGCGGC ATAACA ACCGCGC TTTTTTGTCTGAGAG TERM 599 656785 - 656806 + G 70 -5.1 -4.42653 | gap 1, overlap 656790 CTGTGGCCTCGAGGC CGCGGTCGGC ATG GTCGA-TGCG TTTTATCACTACCGT Shew_0579 656549 - 657568 + | arginine N-succinyltransferase TERM 600 657948 - 657995 + G 72 -10.4 -3.46647 | gap 1, opp_overlap 657945 657976, overlap 657946 CTGAAAACGACACCC CAGCCGGCCGCGCCGTGCTGCGT CAC AAGCCACACGGCGTGGT-GGCGG TATTTGGTCCCTACA Shew_0580 657575 - 659038 + | succinylglutamic semialdehyde dehydrogenase TERM 601 659049 - 659075 + F 100 -13 -4.84359 | opp_overlap 659049 659043 TTTAGTAAACAAGCA TGGGAGTGGGCG TCT TGCCTGCTCCCA TTTTTATAGGCGTAC TERM 602 659150 - 659132 - f 73 -4.5 -4.8743 | gap 1 GTGAAAACAAACAAA CCGG-CGC GATA ACGACCGG TAACACGATGATGTT TERM 603 659741 - 659729 - g 73 -9.1 -3.91911 | opp_overlap 659727 TTGAGGTGAACGAAA CCCTG AAG CAGGG CGATTTCGTGCTCAA Shew_0581 659179 - 659979 + | hypothetical protein TERM 604 660008 - 660026 + T 100 -14.6 -5.60993 | opp_overlap 660008 CTCTGACAGTAAAAA GCCGATGC ACT GCATCGGC TTTTTTTGTGGGCGA TERM 605 660026 - 660008 - T 100 -14.6 -4.8048 | opp_overlap 660008 CTCTGACAGTAAAAA GCCGATGC ACT GCATCGGC TTTTTTTGTGGGCGA Shew_0582 661414 - 660077 - | integral membrane sensor signal transduction histidine kinase Shew_0583 662085 - 661411 - | two component transcriptional regulator Shew_0584 662534 - 662196 - | hypothetical protein TERM 606 662553 - 662578 + r 89 -11.9 -3.66378 | opp_overlap 662554, overlap 662554 GGCTGTCCTAAAAAA ATGGCCTGACT AAGG AGTCAGGCCAC TTTAACTAAGATCTA TERM 607 662577 - 662554 - R 100 -15.4 -5.40072 | opp_overlap 662553 662554 GCTGTCCTAAAAAAA TGGCCTGACT AAGG AGTCAGGCCA CTTTAACTAAGATCT TERM 608 662554 - 662577 + r 93 -15.4 -2.79505 | opp_overlap 662554, overlap 662553 GCTGTCCTAAAAAAA TGGCCTGACT AAGG AGTCAGGCCA CTTTAACTAAGATCT Shew_0585 663251 - 662616 - | cAMP-regulatory protein TERM 609 663340 - 663329 - H 71 -2.2 -5.03715 | ATTAGGGCCAAAAAA CCTC GTCA GAGA TCAAATTATTGCAAT TERM 610 663742 - 663766 + G 75 -6.4 -4.52857 | gap 1 CCTACTGGCCCTGTT TGCC-GTGCAG CAGC CTGCCCTGGCA TTTTCTGTGCCCGCT Shew_0586 663695 - 664474 + | TPR repeat-containing protein TERM 611 664514 - 664531 + T 100 -9.1 -5.4251 | opp_overlap 664514 664512 TCCTAAAGATTAAGA CGTCGAC TCGG GTCGGCG TTTTTTATGTCTGAA Shew_0587 665698 - 664811 - | phosphoribulokinase TERM 612 665726 - 665741 + r 70 -10.4 -2.57564 | overlap 665725 ATAGCGCTAAGCTGA TGCCCG ATAA CGGGCA ATTGTGAACCAATAG Shew_0588 666045 - 665782 - | hypothetical protein Shew_0589 667031 - 666048 - | alpha/beta hydrolase fold Shew_0590 667166 - 667672 + | hypothetical protein TERM 613 669036 - 669055 + G 74 -10.6 -3.54424 | TGACCGACGCCTTCT GGCGGGCC GCAC GGCGCGCC TTTGCCAGCATGGCC Shew_0591 667823 - 669412 + | glucose-methanol-choline oxidoreductase Shew_0592 669918 - 669469 - | hypothetical protein Shew_0593 671896 - 669986 - | ABC transporter-related protein TERM 614 670091 - 670115 + g 80 -11.4 -3.79906 | ATGCTGGGTTCGCTC GGCCAGGATC TGGGT GAGCCTGGCC TTGTTATCGGCCTCA TERM 615 670755 - 670739 - G 71 -4.4 -4.60041 | gap 1, overlap 670740 670741 ATCCAGGCGCAAAAA CTCCAGC TGAT GCTGG-G CGAAGTAACCGATAT Shew_0594 672071 - 672271 + | hypothetical protein Shew_0595 672648 - 672337 - | hypothetical protein TERM 616 672693 - 672705 + r 79 -7.7 -4.36914 | opp_overlap 672693 672688 672702 672703 GTGGCACACATGATA GCGAT AAA ATCGC TTTTATACGAAGGCG TERM 617 672741 - 672717 - R 83 -12.1 -3.25823 | overlap 672703 672702 TCGCTTTTATACGAA GGCGCCGAG ATTATTG CCCGGCGCC TTCGAGATTAAAACT Shew_0596 674671 - 672749 - | methyl-accepting chemotaxis sensory transducer TERM 618 673623 - 673641 + g 71 -12.4 -2.82516 | ACAAACTGGTTATAG CTGGCAGC CAT GCTGCCGG TCTCATCCTGACGAC TERM 619 673803 - 673819 + g 86 -10.9 -4.24342 | ATCAGCCCCATCAGT GCCAGTT GCC AACTGGC TTTATTGATGGCGCC Shew_0597 674928 - 676355 + | major facilitator transporter TERM 620 676392 - 676415 + F 100 -16 -5.27476 | GGTTTAATCCTGAAT GCCGTCGCGA TCCC TCGCGGCGGC TTTTATTTTCTTCCC TERM 621 677784 - 677740 - g 75 -13.8 -2.62184 | CCCTGCTGGACACCA TGCCGCC-TCAACCCAGAATGG TCA CCATTC-AGATCGACGGCGGCA AGAAGCAGAAGGTGC Shew_0598 676581 - 677987 + | ATP-dependent RNA helicase DbpA TERM 622 678021 - 678042 + F 100 -8.7 -5.4833 | opp_overlap 678021 GCGGTGATTGGAAAA GGAGCTGAC TTAG GTTGGCTCC TTTTTTGTTGCCTGG TERM 623 678080 - 678094 + F 80 -7.2 -4.46112 | TGGTGGCTACTCATC GAGATA TCC TATCTC TTTGTTTGAGTAGCG TERM 624 678170 - 678182 + F 80 -9.1 -4.04206 | opp_overlap 678166 TCACTGAAAATTATT GCCTG CCG CAGGC TTTATGTGCAGATAC TERM 625 678571 - 678560 - g 70 -3 -4.71791 | ACATCAAGAAAGAAA TTCT GCGA AGAA TCAGAAACGCAGAAA Shew_0599 678532 - 679308 + | hypothetical protein Shew_0600 679374 - 679688 + | hypothetical protein TERM 626 680137 - 680150 + F 71 -4.5 -4.60041 | AATTATGCTACTTTT CTCCG GGAT TGGAG TTTTTGCCACTGGGT Shew_0601 680283 - 680669 + | hypothetical protein TERM 627 680967 - 680955 - f 73 -9.1 -3.48276 | TGTGTTTGCACATAA GCCTG CCG CAGGC AATTCAAAACCATGA TERM 628 681063 - 681050 - f 80 -6.7 -4.86862 | opp_overlap 681048 GCTAAAAAACCAAAA CCTTC ATTC GAAGG TCTAAATTCTTTTGT Shew_0602 681505 - 682158 + | methyltransferase type 12 Shew_0603 682602 - 682183 - | glutathione-dependent formaldehyde-activating, GFA TERM 629 682743 - 682726 - R 100 -11.3 -4.8048 | opp_overlap 682726 TGGGGATATGAAAAA GCCTGTC GGAT GACAGGC TTTTAGGCGTTCGTT TERM 630 682726 - 682743 + r 93 -11.3 -4.15508 | opp_overlap 682726 TGGGGATATGAAAAA GCCTGTC GGAT GACAGGC TTTTAGGCGTTCGTT Shew_0604 684251 - 682776 - | DEAD/DEAH box helicase domain-containing protein TERM 631 684343 - 684325 - H 79 -11.8 -2.55999 | overlap 684324 GCAGCTTACATTAAG CGATAGCA AAG TGCTATCG AATTCGCCAGTTATG TERM 632 684559 - 684533 - g 83 -7.3 -4.73973 | gap 1, overlap 684535 684554 ACACAAAACAAGAAA TACGGTCTTCGC GTGA GCGAAG-CCGAA GGCAGCTGGACCGCC TERM 633 684557 - 684535 - g 77 -9.9 -3.95309 | gap 1, overlap 684533 684554 ACAAAACAAGAAATA CGGTCTTCGC GTGA GCGAAG-CCG AAGGCAGCTGGACCG Shew_0605 684515 - 684850 + | hypothetical protein TERM 634 684911 - 684894 - T 100 -12.7 -5.42131 | opp_overlap 684894 CAAGTACATAAAAAA GCCCAGC AGAT GCTGGGC TTTTTGCGTTTATGG TERM 635 684894 - 684911 + T 100 -12.7 -4.84529 | opp_overlap 684894 CAAGTACATAAAAAA GCCCAGC AGAT GCTGGGC TTTTTGCGTTTATGG Shew_0606 685876 - 684935 - | polysulphide reductase, NrfD Shew_0607 686445 - 685873 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shew_0608 688740 - 686458 - | molybdopterin oxidoreductase TERM 636 688939 - 688921 - R 77 -4.6 -5.11033 | overlap 688911 CAGAATGTGAAAAAA GTGTGA CCTTTAT TCACAC CGGGCTTTGGGAATC Shew_0609 689630 - 689031 - | two component LuxR family transcriptional regulator Shew_0610 689834 - 691714 + | integral membrane sensor signal transduction histidine kinase TERM 637 692195 - 692181 - g 77 -2.8 -5.1287 | opp_overlap 692181 TTTATACGGAAAAAA GCAGTA TCT TACTCC TCTAATAGAGGGGGA Shew_0611 692107 - 692814 + | hypothetical protein TERM 638 692813 - 692797 - f 75 -10.9 -2.87931 | overlap 692799 TTTATCGGTGAGATA TATGCGC CAC GCGCATA ATAAGGTGGTGCAGT Shew_0612 692873 - 693304 + | hypothetical protein Shew_0613 693986 - 695749 + | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 639 696575 - 696606 + G 71 -8.6 -3.87815 | overlap 696577 GGGTGGGGGACAAGG TGCCGCCAGGGCCG CTGC TGGCGCTGGTGGTG TTTATGACCCTGGCC TERM 640 696577 - 696604 + G 75 -11.2 -3.52906 | overlap 696575 GTGGGGGACAAGGTG CCGCCAGGGCCG CTGC TGGCGCTGGTGG TGTTTATGACCCTGG Shew_0614 695749 - 697524 + | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 641 697605 - 697624 + T 100 -13.6 -5.72622 | opp_overlap 697605 ACGGGTAATAAAAAA GCCAGTGG AAAT CCACTGGC TTTTTTGTTTGTCGC TERM 642 697624 - 697605 - T 100 -13.6 -5.45652 | opp_overlap 697605 ACGGGTAATAAAAAA GCCAGTGG AAAT CCACTGGC TTTTTTGTTTGTCGC Shew_0615 700858 - 697679 - | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 643 697714 - 697736 + g 83 -12 -3.72324 | GAGAAAGCAGGGTGG CGTTACCGCC GAT GGCGGTGATG TTGTTGGTGCGCGTC TERM 644 699061 - 699092 + g 70 -11 -2.98986 | gap 1, overlap 699063 CCTGCTCGATCGCCT GATTGTTGGCGAAGG CGA CCTT-GCCGACGATC TGTGTGGTGTCGTAT TERM 645 699276 - 699291 + g 74 -3.2 -4.91084 | TCGGCGCCGAAGATG TCGATC GGCT GAACGA TTTTATTGTTGGCTA TERM 646 701137 - 701156 + r 75 -10.7 -2.86747 | opp_overlap 701104 701137, overlap 701134 TTAGCCATAAAAAAA GCCAGGG ACTCAG CCCTGGC TCATTATGCTCGCTC TERM 647 701156 - 701137 - R 100 -10.7 -5.64274 | opp_overlap 701137 701134, overlap 701104 TTAGCCATAAAAAAA GCCAGGG ACTCAG CCCTGGC TCATTATGCTCGCTC Shew_0616 701738 - 701190 - | SH3 domain-containing protein TERM 648 701942 - 701971 + r 100 -12.3 -3.76568 | opp_overlap 701948, overlap 701948 AGGATAAATGGAAAT AAAAAAGGAAGCC TTGA GGCTTCCTTTTTA TTCTCTTATGAATAG TERM 649 701965 - 701948 - R 100 -11.3 -5.67283 | opp_overlap 701948 701942 AATGGAAATAAAAAA GGAAGCC TTGA GGCTTCC TTTTTATTCTCTTAT TERM 650 701948 - 701965 + r 100 -11.3 -5.31072 | opp_overlap 701948, overlap 701942 AATGGAAATAAAAAA GGAAGCC TTGA GGCTTCC TTTTTATTCTCTTAT Shew_0617 703263 - 701995 - | phosphate transporter Shew_0618 703968 - 703288 - | hypothetical protein TERM 651 703671 - 703685 + g 79 -7.1 -4.70583 | GACCTGAAATGTCTT TCGCC TTGTT GGCGA TTTTATCTTGCTGGG TERM 652 703994 - 704049 + H 84 -7.5 -4.96848 | opp_overlap 704007 704008 704046, overlap 704007 CTATTTAGGTTATTC CACTGTTGGAAAATGCGGGCGCATG TTAACC CAAGCGTCCGCGTATTGAAACTGTG TTTTTATATAAAAAC TERM 653 705354 - 705396 + G 83 -12.1 -3.794 | gap 1, opp_overlap 705342 AGAGCCTGCAGGCCT TCGCCGATCGGCTG-CAGGA AGCC TCCTGGCAGCAGATTGTCGA TTTAATGCCTTCCAA Shew_0619 704222 - 705709 + | adenylate cyclase TERM 654 705726 - 705774 + T 80 -5.4 -5.04325 | gap 1, opp_overlap 705734, overlap 705730 705734 TGTCCAACAGGGCCA TCACTCAACGGATGACTCGGCGC AATC GCCCTGAGTCATCTGTT-ACTTA TTTTTCTCATTTAAC TERM 655 705730 - 705771 + T 89 -8.7 -4.59919 | opp_overlap 705734, overlap 705726 705734 CAACAGGGCCATCAC TCAACGGATGACTCGGCGC AATC GCCCTGAGTCATCTGTTAC TTATTTTTCTCATTT TERM 656 705734 - 705767 + T 100 -13.9 -3.77278 | opp_overlap 705734, overlap 705730 705726 AGGGCCATCACTCAA CGGATGACTCGGCGC AATC GCCCTGAGTCATCTG TTACTTATTTTTCTC TERM 657 705767 - 705734 - T 71 -9.5 -3.09635 | opp_overlap 705730 705726 705734 AGGGCCATCACTCAA CGGATGACTCGGCGC AATC GCCCTGAGTCATCTG TTACTTATTTTTCTC Shew_0620 706562 - 705768 - | ion transport 2 domain-containing protein Shew_0621 706975 - 706643 - | hypothetical protein TERM 658 707011 - 707027 + r 80 -10.8 -3.38699 | opp_overlap 707010 707009, overlap 707009 707005 TGAATCTTGCAAAGT GGGCGG CAAGA CCGCCC TGTGTTGTTTATAGC Shew_0622 707680 - 707036 - | hypothetical protein TERM 659 707836 - 707871 + r 77 -11.2 -2.71765 | gap 1, opp_overlap 707841, overlap 707835 707839 TTACCGTGATTGGCA CAAAAGCACCTTG-GGC AGA GCCGCAAGGTGCTATAG CTTGATTTAGCCTGT TERM 660 707839 - 707868 + r 77 -11.5 -2.6342 | gap 1, opp_overlap 707841, overlap 707836 707835 CCGTGATTGGCACAA AAGCACCTTG-GGC AGA GCCGCAAGGTGCTA TAGCTTGATTTAGCC TERM 661 707866 - 707841 - R 100 -14.1 -4.38712 | gap 1, opp_overlap 707839 707836 707835 GTGATTGGCACAAAA GCACCTTG-GGC AGA GCCGCAAGGTGC TATAGCTTGATTTAG Shew_0623 708574 - 707888 - | phage shock protein A, PspA Shew_0624 709058 - 708645 - | hypothetical protein TERM 662 709097 - 709126 + r 73 -2.9 -5.1167 | gap 1, opp_overlap 709097 709095, overlap 709091 GTCTGCGATTAAAGA TAGCACTGCGACAT AAT ATGTCA-AGCGCTA TTTTTGTGTTCCATT Shew_0625 710876 - 709149 - | spermidine synthase TERM 663 709320 - 709276 - G 81 -9.2 -4.37711 | gap 1, opp_overlap 709313 TTAGGAAATTCAAAA GCCGCCCTGATAAGCCCAGGC GTGA GCCAGGGGTCATC-GACCGGC AGCTCTGTCATACTC TERM 664 710834 - 710857 + g 74 -13.2 -2.7709 | opp_overlap 710837, overlap 710837 ACCAGCTTAATGATT TAACGCCTGC AGGA GCAGGCGTTG TGGTGTGTGTTGATT TERM 665 710837 - 710854 + g 79 -12.7 -3.52307 | opp_overlap 710837, overlap 710834 AGCTTAATGATTTAA CGCCTGC AGGA GCAGGCG TTGTGGTGTGTGTTG TERM 666 710854 - 710837 - G 75 -12.7 -3.13343 | opp_overlap 710837 710834 AGCTTAATGATTTAA CGCCTGC AGGA GCAGGCG TTGTGGTGTGTGTTG Shew_0626 711789 - 710890 - | hypothetical protein Shew_0627 712757 - 711801 - | hypothetical protein TERM 667 713355 - 713369 + G 83 -10 -4.27467 | CCGTCAGATGGTGCG TCTCGC CTG GCGAGA TTTCTTAGGTTATGC Shew_0628 713023 - 715893 + | (glutamate--ammonia-ligase) adenylyltransferase TERM 668 716093 - 716137 + G 84 -13.6 -3.57144 | gap 2, overlap 716095 TCAGCTTAAGGGGAT CG-CCGTGGA-TCTGCTGGCCG CGG CGGCCCGCAGGGTCGACGGTCG TTTCGACATCCACAG TERM 669 716095 - 716134 + G 82 -15 -2.91695 | gap 1, overlap 716093 AGCTTAAGGGGATCG CCGTGGA-TCTGCTGGCCG CGG CGGCCCGCAGGGTCGACGG TCGTTTCGACATCCA Shew_0629 715941 - 716714 + | extracellular solute-binding protein Shew_0630 717529 - 716717 - | hypothetical protein TERM 670 717392 - 717421 + g 71 -7 -4.27316 | opp_overlap 717377 CTGCGCCGTCATCCG CGCGGTGGCCAG CAGCAT CTCGCCGCCGAG TTTTAGGTTAAACAG TERM 671 717543 - 717555 + r 74 -10.5 -3.19018 | ATGGTTTAGGCCTCG CCCGC GGT GCGGG TTGCGTTCAGGTATT Shew_0631 718699 - 717533 - | AFG1 family ATPase TERM 672 718775 - 718755 - R 93 -11.8 -3.95852 | opp_overlap 718755 ATGTTATGAATTAAA CAGCGCCC GCAGG GGGCGCCG TTTTGATGGACTATT TERM 673 718755 - 718775 + r 84 -9.6 -4.28018 | opp_overlap 718755 ATGTTATGAATTAAA CAGCGCCC GCAGG GGGCGCCG TTTTGATGGACTATT Shew_0632 720231 - 718786 - | OmpA/MotB domain-containing protein Shew_0633 721741 - 720299 - | hypothetical protein TERM 674 721307 - 721328 + g 74 -2.9 -4.91712 | AAATTGTTCGAGTCG CTTGGGCTG ATAA CAGCTGGAG TTTTTGTCGATTCGG TERM 675 721792 - 721837 + r 72 -8.4 -3.57263 | overlap 721796 721797 CGTTAATCTTGCGAT TGAGCCGCCATGGCATAG AGGCTCGTGC CTATGCCATGGCGATTAA TTTAGAAGTAGAGGT TERM 676 721796 - 721833 + r 85 -11.4 -3.52204 | overlap 721792 721797 AATCTTGCGATTGAG CCGCCATGGCATAG AGGCTCGTGC CTATGCCATGGCGA TTAATTTAGAAGTAG TERM 677 721797 - 721832 + r 89 -14.9 -2.71001 | overlap 721796 721792 ATCTTGCGATTGAGC CGCCATGGCATAG AGGCTCGTGC CTATGCCATGGCG ATTAATTTAGAAGTA Shew_0634 722240 - 721839 - | hypothetical protein Shew_0635 723169 - 722474 - | hypothetical protein TERM 678 722970 - 722955 - G 79 -4 -5.09426 | gap 1 GGGAAGCGCAAAAAA TCGAACC TGG GGT-CGA CTGAAGGAATGAACA TERM 679 723261 - 723245 - R 75 -5.1 -4.87807 | CTAATACACCAAAAA GGGCA TTCAATT TGCCC AAGAAGATGCTGAAA Shew_0636 723765 - 723307 - | hypothetical protein Shew_0637 724472 - 723795 - | hypothetical protein TERM 680 724625 - 724650 + r 74 -10.5 -3.15129 | opp_overlap 724608 724630, overlap 724630 TTTTTATCAGGGATA AAAAATGGCCC CTAG GGGCCATTTTG TCCTTTATTGGTTGG TERM 681 724630 - 724645 + r 91 -10.4 -4.67256 | opp_overlap 724630, overlap 724625 ATCAGGGATAAAAAA TGGCCC CTAG GGGCCA TTTTGTCCTTTATTG TERM 682 724645 - 724630 - R 100 -10.4 -5.28778 | opp_overlap 724625 724630 ATCAGGGATAAAAAA TGGCCC CTAG GGGCCA TTTTGTCCTTTATTG Shew_0638 728878 - 724655 - | cell surface receptor IPT/TIG domain-containing protein Shew_0639 729604 - 728957 - | hypothetical protein Shew_0640 730119 - 729637 - | TPR repeat-containing protein Shew_0641 730451 - 730107 - | hypothetical protein TERM 683 730212 - 730248 + g 73 -5.3 -4.63592 | gap 1, overlap 730215 730215 ACAAGCACTGCTGCG CCAGG-GCTTAAGATT TCGGGT GATCTTAAGCACCTTG TTGTTTTTATTGAGG TERM 684 730215 - 730245 + g 70 -5.6 -4.40123 | gap 1, overlap 730215 730212 AGCACTGCTGCGCCA GG-GCTTAAGATT TCGGGT GATCTTAAGCACC TTGTTGTTTTTATTG Shew_0642 731316 - 730453 - | type II secretion system protein Shew_0643 732176 - 731325 - | type II secretion system protein Shew_0644 733878 - 732169 - | FHA domain-containing protein Shew_0645 735198 - 733888 - | type II and III secretion system protein TERM 685 734430 - 734440 + g 73 -8.2 -4.13945 | overlap 734427 GCTGGGCCAGTAGGC GGGC ATC GCCC TTTTCAGATAGCAAT Shew_0646 736091 - 735195 - | SAF domain-containing protein TERM 686 735893 - 735909 + g 71 -4.3 -4.57569 | CCGACATGTTGGCCT GGGAGAT GAT GTCGCCC TTTTTCAGAGGCTGG Shew_0647 736297 - 736106 - | hypothetical protein Shew_0648 736976 - 736305 - | hypothetical protein Shew_0649 737841 - 736981 - | hypothetical protein Shew_0650 739199 - 737841 - | hypothetical protein Shew_0651 739582 - 739274 - | hypothetical protein TERM 687 739608 - 739629 + r 100 -14.5 -3.36273 | opp_overlap 739608 TATGATTTATGGAAA GGCAAGTGC CTTG GCACTTGCC TTAGTCTTGACCCCA TERM 688 739629 - 739608 - R 100 -14.5 -3.67296 | opp_overlap 739608 TATGATTTATGGAAA GGCAAGTGC CTTG GCACTTGCC TTAGTCTTGACCCCA Shew_0652 739960 - 739685 - | hypothetical protein Shew_0653 740704 - 740084 - | LuxR family transcriptional regulator TERM 689 740177 - 740187 + g 76 -4 -4.88405 | CTTGATGGTATTTAT TGAA ACG TTCA TTTTATTTGCGGCTT TERM 690 740799 - 740812 + r 79 -3.9 -5.30189 | TTATGACTAAATTAT TAAAC GCTC GTTTA TTTTTTCATATTCTA TERM 691 741002 - 741024 + r 72 -7.6 -4.09243 | opp_overlap 741000 741003, overlap 741003 741005 AAAAATAAGCAACGC AGAGGCGACA GCT TGCCGCCTCA TTTTAGCGCCCTGTC TERM 692 741023 - 741003 - R 84 -13.3 -2.65174 | opp_overlap 741002 741003 741005, overlap 741000 AAAATAAGCAACGCA GAGGCGACA GCT TGCCGCCTC ATTTTAGCGCCCTGT TERM 693 741003 - 741023 + r 76 -11.1 -3.05224 | opp_overlap 741003 741000, overlap 741002 741005 AAAATAAGCAACGCA GAGGCGACA GCT TGCCGCCTC ATTTTAGCGCCCTGT Shew_0654 742550 - 741108 - | peptidase M16 domain-containing protein Shew_0655 743971 - 742547 - | peptidase M16 domain-containing protein TERM 694 743024 - 743045 + g 71 -7.9 -4.08216 | opp_overlap 743037 CGCCTTGAGGTTCAT CTGCTCCAG CATA CTGGTGCGG TTTTGCAGCAGATAA Shew_0656 745531 - 743996 - | anaerobic nitric oxide reductase transcription regulator TERM 695 745668 - 745684 + r 82 -10.1 -3.90586 | opp_overlap 745668 CTTTGAGGGTAAAAA GGGGTCG ATA TGACCCC TTTGTCGAGTGATGT TERM 696 745684 - 745668 - R 91 -9.4 -4.62069 | opp_overlap 745668 CTTTGAGGGTAAAAA GGGGTC GATAT GACCCC TTTGTCGAGTGATGT Shew_0657 747997 - 745706 - | putative nitric oxide reductase (subunit B) transmembrane protein TERM 697 748161 - 748147 - R 89 -8.6 -4.70879 | opp_overlap 748157, overlap 748138 GTTAAAGTGTAAAAA TGACAC CGC GTGTCA AAAAGACAGTGTGTG TERM 698 748237 - 748255 + r 81 -11.7 -3.01791 | opp_overlap 748237 GCGGCAAATAAAAAA GCCAGCC TAAAT GGCTGGC TGTTACCGAGCGACT TERM 699 748255 - 748237 - R 100 -11.7 -5.63517 | opp_overlap 748237 GCGGCAAATAAAAAA GCCAGCC TAAAT GGCTGGC TGTTACCGAGCGACT Shew_0658 749215 - 748289 - | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase Shew_0659 749321 - 750751 + | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase TERM 700 750773 - 750817 + G 81 -15 -2.88249 | gap 1, overlap 750773 AGACGTTATTGATCG CCAGTGCCTGGTTCTGGGCGC CTAT GC-CCCAAGGCCAGGCCCTGG TGTGTCAAACGTCTC Shew_0660 750748 - 751584 + | hypothetical protein TERM 701 751651 - 751625 - T 100 -12.4 -4.61868 | opp_overlap 751631, overlap 751631 GAGTCAGATAGAAAA TAAAAAGGAGCC AGA GGCTCCTTTTTT TGCTTATTGCTTTCG TERM 702 751645 - 751631 - T 100 -11.4 -5.58522 | opp_overlap 751631, overlap 751625 GATAGAAAATAAAAA GGAGCC AGA GGCTCC TTTTTTTGCTTATTG TERM 703 751631 - 751645 + T 100 -11.4 -5.71638 | opp_overlap 751625 751631 GATAGAAAATAAAAA GGAGCC AGA GGCTCC TTTTTTTGCTTATTG Shew_0661 751969 - 751655 - | hypothetical protein TERM 704 752163 - 752191 + r 84 -13.3 -2.54632 | opp_overlap 752163 752170, overlap 752170 ATTTTCAATAGGCAA TAAAAAAGGCCGT TAA ACGGCCTTTTTTC GATTTTGTGCGCTTA TERM 705 752191 - 752163 - R 91 -13.3 -3.18728 | opp_overlap 752163 752170, overlap 752170 ATTTTCAATAGGCAA TAAAAAAGGCCGT TAA ACGGCCTTTTTTC GATTTTGTGCGCTTA TERM 706 752170 - 752184 + r 100 -11.4 -5.28315 | opp_overlap 752163 752170, overlap 752163 ATAGGCAATAAAAAA GGCCGT TAA ACGGCC TTTTTTCGATTTTGT TERM 707 752184 - 752170 - R 100 -11.4 -5.49234 | opp_overlap 752170 752163, overlap 752163 ATAGGCAATAAAAAA GGCCGT TAA ACGGCC TTTTTTCGATTTTGT Shew_0662 753586 - 752204 - | NAD(P) transhydrogenase, beta subunit Shew_0663 753868 - 753593 - | oxidoreductase Shew_0664 755037 - 753868 - | NAD(P) transhydrogenase subunit alpha Shew_0665 755369 - 757153 + | sulfite reductase (NADPH) flavoprotein, alpha chain Shew_0666 757231 - 758928 + | sulfite reductase subunit beta Shew_0667 758921 - 759673 + | phosphoadenosine phosphosulfate reductase TERM 708 759915 - 759903 - f 71 -9.1 -3.30439 | overlap 759899 AAGATCGAAACCCAA CTCGC TTG GCGAG AGCTAGATGTTTGAT TERM 709 761634 - 761684 + G 76 -6.9 -4.52589 | opp_overlap 761633 761632 761651 ACGGGCGAAAAGAGC CAGGCGA-TCGCCGATAAGCTTGTC GCT GAGAAGCCAA-CGGCGAATGGCCTG TTTTCTATGACAGCC Shew_0668 760155 - 761870 + | hypothetical protein TERM 710 761910 - 761963 + T 85 -11.2 -3.53437 | gap 2, opp_overlap 761911 761924, overlap 761911 761913 761924 CATTGCACATAAGTC ATAGCGA-ATAAAAAGCCCCG-GGGC CTGA GCGCACGGGGCTTTTTTTATCGCTAC CTTTTTACTTACTCG TERM 711 761962 - 761911 - T 89 -14.7 -2.63257 | gap 2, opp_overlap 761910 761911 761913 761924, overlap 761924 ATTGCACATAAGTCA TAGCGA-ATAAAAAGCCCCG-GGGC CTGA GCGCACGGGGCTTTTTTTATCGCTA CCTTTTTACTTACTC TERM 712 761911 - 761962 + T 89 -14.7 -2.71339 | gap 2, opp_overlap 761911 761924, overlap 761910 761913 761924 ATTGCACATAAGTCA TAGCGA-ATAAAAAGCCCCG-GGGC CTGA GCGCACGGGGCTTTTTTTATCGCTA CCTTTTTACTTACTC TERM 713 761913 - 761960 + T 86 -12.9 -2.88788 | gap 2, opp_overlap 761911 761924, overlap 761911 761910 761924 TGCACATAAGTCATA GCGA-ATAAAAAGCCCCG-GGGC CTGA GCGCACGGGGCTTTTTTTATCGC TACCTTTTTACTTAC TERM 714 761924 - 761948 + T 100 -9.2 -5.64274 | gap 1, opp_overlap 761911 761924, overlap 761913 761911 761910 CATAGCGAATAAAAA GCCCCG-GGGC CTGA GCGCACGGGGC TTTTTTTATCGCTAC TERM 715 761948 - 761924 - T 93 -9.2 -5.12068 | gap 1, opp_overlap 761924 761913 761911 761910, overlap 761911 CATAGCGAATAAAAA GCCCCG-GGGC CTGA GCGCACGGGGC TTTTTTTATCGCTAC Shew_0669 762502 - 761972 - | redoxin domain-containing protein TERM 716 762300 - 762346 + g 86 -14.5 -3.54741 | gap 1, opp_overlap 762295 TTGCACTCAAGCGTA CAGCCTCGGGTATTGGCCATGG GGTA CCA-GGCCAGTACCAGGGTCTG TTTGCCCAGGTAGTC Shew_0670 764085 - 762619 - | hypothetical protein TERM 717 763834 - 763857 + g 70 -11.7 -2.93532 | gap 1, overlap 763834 763843 TAGCTGACGCTCACC GCCCAGGGGC AGCTG GCCCC-GGGC CTTGTTGATTTCGGT TERM 718 763834 - 763858 + g 71 -8.4 -3.90425 | overlap 763834 763843 TAGCTGACGCTCACC GCCCAGGGGC AGCTG GCCCCGGGCC TTGTTGATTTCGGTC TERM 719 764102 - 764124 + r 72 -10.4 -2.90392 | CTGCTTCCTAATGCG AGCGGCGGGC ATA GCGCGCCGCC TATGGTTAGAGAATG Shew_0671 765056 - 764130 - | phospholipase A(1) Shew_0672 765289 - 766110 + | uroporphyrin-III C-methyltransferase Shew_0673 766955 - 766119 - | hypothetical protein Shew_0674 768220 - 767054 - | major facilitator transporter Shew_0675 768423 - 769868 + | hypothetical protein Shew_0676 769906 - 771054 + | putative lipoprotein TERM 720 771083 - 771068 - f 75 -9 -3.68341 | opp_overlap 771068 AAGGCCAGTTAAGAA GAGAGC CCAG GCTCTC TTTTTCTTGCCTATA TERM 721 771068 - 771083 + F 93 -9 -5.12068 | opp_overlap 771068 AAGGCCAGTTAAGAA GAGAGC CCAG GCTCTC TTTTTCTTGCCTATA TERM 722 771143 - 771117 - f 100 -11 -4.96501 | CCTCATAAAAACAAA GGCTAAATGG CAAAAGC CCATTTAGCC TGACTGCAATAAAGT TERM 723 772252 - 772262 + G 71 -8.2 -3.91897 | opp_overlap 772252 ATGACAGCTACCTAA CCCG CAC CGGG TTTGTCGATACCGGC Shew_0677 771168 - 772799 + | hypothetical protein TERM 724 772821 - 772838 + F 100 -10.5 -5.24129 | opp_overlap 772810 772819 772812 772821 GAAAGACCATGAAGA GCGCGGT CTAG GCCGCGC TTTTTTATGACAAAA TERM 725 772838 - 772821 - f 72 -9.8 -3.21378 | opp_overlap 772821, overlap 772810 772819 772812 GAAAGACCATGAAGA GCGCGG TCTAGG CCGCGC TTTTTTATGACAAAA TERM 726 773220 - 773239 + G 74 -4.9 -4.68908 | GAGAACATCAAGGTG CTGCAGG AGAAGG CCAGCAG TTTCTTTTCGGTGAG Shew_0678 772995 - 773516 + | protoporphyrinogen oxidase Shew_0679 773581 - 774105 + | hypothetical protein Shew_0680 775065 - 774193 - | LysR family transcriptional regulator TERM 727 774564 - 774590 + g 71 -6.5 -4.2074 | overlap 774545 GTTGGGGCGCGCTCA CCAGCAGCCAT TTAAT ACGGCTGATGG TTTGTATGTTGACCC TERM 728 775197 - 775184 - g 81 -3.1 -5.1861 | GTTACCATGAAAAAA GTACT ACTA AGCAC CACTATCGCAGCCCT Shew_0681 775175 - 776254 + | penicillin V acylase-like protein TERM 729 776308 - 776291 - T 100 -14.1 -5.01732 | opp_overlap 776291 AATGGGTTTAAAAAA GCGCGGC TTAG GCCGCGC TTTTTTTATCTGCTC TERM 730 776291 - 776308 + T 100 -14.1 -5.74122 | opp_overlap 776291 AATGGGTTTAAAAAA GCGCGGC TTAG GCCGCGC TTTTTTTATCTGCTC Shew_0682 777433 - 776330 - | major facilitator superfamily permease Shew_0683 778487 - 777423 - | secretion protein HlyD family protein Shew_0684 778885 - 779292 + | hypothetical protein Shew_0685 779359 - 780066 + | hypothetical protein TERM 731 780105 - 780142 + T 81 -12.1 -3.04715 | opp_overlap 780110 780116, overlap 780116 GATTAATAACAACGA GAAACGAAAAAGGCGCC GTAG GGCGCCTTTTTTATGTC ATTTTGCCGAGCCTA TERM 732 780137 - 780110 - T 83 -12.8 -3.08434 | opp_overlap 780105 780116, overlap 780116 ATAACAACGAGAAAC GAAAAAGGCGCC GTAG GGCGCCTTTTTT ATGTCATTTTGCCGA TERM 733 780116 - 780131 + T 100 -11.8 -5.43487 | opp_overlap 780110 780116, overlap 780105 ACGAGAAACGAAAAA GGCGCC GTAG GGCGCC TTTTTTATGTCATTT TERM 734 780131 - 780116 - T 100 -11.8 -5.05505 | opp_overlap 780116 780105, overlap 780110 ACGAGAAACGAAAAA GGCGCC GTAG GGCGCC TTTTTTATGTCATTT Shew_0686 780817 - 780155 - | DSBA oxidoreductase Shew_0687 781661 - 781002 - | heat shock protein DnaJ domain-containing protein TERM 735 781797 - 781773 - R 100 -14.4 -4.50193 | AGCAACCAATGAAAA GGCGATGCAT GGCAT ATGCATCGCC CTATGGCAGATCATG Shew_0688 782477 - 781824 - | dihydropteridine reductase Shew_0689 782796 - 783626 + | hypothetical protein Shew_0690 783798 - 784871 + | endonuclease/exonuclease/phosphatase Shew_0691 785061 - 786194 + | hypothetical protein Shew_0692 786199 - 787119 + | hypothetical protein TERM 736 787122 - 787144 + F 89 -8.4 -4.63218 | overlap 787123 GGCCGAGGATTAGGA GGCGTTTTGC ATT GCAAAGCGCA TTTTCTTGACGCCGC TERM 737 787123 - 787143 + F 85 -11.9 -3.3761 | overlap 787122 GCCGAGGATTAGGAG GCGTTTTGC ATT GCAAAGCGC ATTTTCTTGACGCCG Shew_0693 787227 - 787514 + | hypothetical protein Shew_0694 788452 - 787511 - | hypothetical protein TERM 738 788695 - 788655 - R 87 -8.4 -4.57569 | gap 1, opp_overlap 788657 788662, overlap 788656 788657 788662 GCAGGGGCTTAAAAA GTCAAAAGGGGCAT-TGCC CTTC AGCATATGCCCCTTTTGTT GTTGGCGTTTGTATG TERM 739 788694 - 788656 - R 85 -11.9 -3.3422 | gap 1, opp_overlap 788657 788662, overlap 788655 788657 788662 CAGGGGCTTAAAAAG TCAAAAGGGGCAT-TGCC CTTC AGCATATGCCCCTTTTGT TGTTGGCGTTTGTAT TERM 740 788693 - 788657 - R 93 -15.4 -2.60211 | gap 1, opp_overlap 788657 788662, overlap 788656 788655 788662 AGGGGCTTAAAAAGT CAAAAGGGGCAT-TGCC CTTC AGCATATGCCCCTTTTG TTGTTGGCGTTTGTA TERM 741 788657 - 788693 + r 100 -14.7 -3.71991 | gap 1, opp_overlap 788656 788655 788657 788662, overlap 788662 AGGGGCTTAAAAAGT CAAAAGGGGCAT-TGC CCTTCA GCATATGCCCCTTTTG TTGTTGGCGTTTGTA Shew_0695 788849 - 788634 - | hypothetical protein TERM 742 788688 - 788662 - G 84 -9.5 -4.4874 | gap 1, opp_overlap 788657 788662, overlap 788657 788656 788655 CTTAAAAAGTCAAAA GGGGCAT-TGCC CTTC AGCATATGCCCC TTTTGTTGTTGGCGT TERM 743 788662 - 788688 + g 90 -8.8 -4.90079 | gap 1, opp_overlap 788662 788657 788656 788655, overlap 788657 CTTAAAAAGTCAAAA GGGGCAT-TGC CCTTCA GCATATGCCCC TTTTGTTGTTGGCGT TERM 744 789066 - 789026 - R 89 -14.9 -3.08679 | gap 1 GTGTTGGATGGAATA GGGTTGACCCCTA-CCTC AAAGAA GAGGGCAAGGGTCAACCC CAAAGCTTGCTAGAT Shew_0696 789990 - 789076 - | ribokinase TERM 745 790002 - 790031 + r 74 -9.4 -3.29325 | gap 2, overlap 790000 TCATAGTGTCCTCTC GCCTGAGGGGAGGG CGAA CCCTCCC-T-AGGC TATTAATTATAGGCG rihA 791041 - 790034 - | ribonucleoside hydrolase 1 TERM 746 790198 - 790219 + g 71 -7.9 -4.07568 | CGCCGACCCAGCACT CCTGGGCGG TGAA CAGCTCAGG TTTTAGCAGCCAGGC Shew_0698 791670 - 793052 + | Na+/H+ antiporter NhaC TERM 747 793106 - 793078 - T 100 -21.9 -4.20368 | opp_overlap 793078 GTACTGCAAGAGAAA GGGGCGTTGACTA GTC TAGTCAACGCCCC TTTTGATTAACCCAT TERM 748 793078 - 793106 + T 100 -21.9 -4.41047 | opp_overlap 793078 GTACTGCAAGAGAAA GGGGCGTTGACTA GTC TAGTCAACGCCCC TTTTGATTAACCCAT Shew_0699 794663 - 793188 - | Na+/H+ antiporter TERM 749 794928 - 794946 + r 89 -8.8 -4.65584 | opp_overlap 794929, overlap 794929 AATTTACATAAAAAA AGAGGACC CTG GGTCCTCG TTTTGTGTGGTTTAT TERM 750 794929 - 794945 + r 90 -12.3 -3.37724 | opp_overlap 794929, overlap 794928 ATTTACATAAAAAAA GAGGACC CTG GGTCCTC GTTTTGTGTGGTTTA TERM 751 794945 - 794929 - R 100 -12.3 -5.72616 | opp_overlap 794929 794928 ATTTACATAAAAAAA GAGGACC CTG GGTCCTC GTTTTGTGTGGTTTA Shew_0700 795830 - 794970 - | pirin domain-containing protein TERM 752 796253 - 796268 + G 75 -9 -4.18018 | opp_overlap 796250 TTTGGACAATAGGGA GCTGGT AAAG ACCAGC TTTTGGATCAGCCAG Shew_0701 796188 - 796769 + | hypothetical protein Shew_0702 796784 - 797866 + | rhomboid family protein TERM 753 797887 - 797906 + F 100 -11.4 -5.24129 | opp_overlap 797886 TTATGGTGATTTAAG GCCCCGTC TGTT GATGGGGC TTTTTTATGGGCGCG Shew_0703 798050 - 798412 + | response regulator receiver protein Shew_0704 798599 - 799195 + | hypothetical protein TERM 754 799245 - 799277 + F 90 -10.7 -4.40605 | gap 1, opp_overlap 799245 799243 GCCTAATCGATAACA GGCTCGGTACTGAA TTTGTC TTCAG-GCCGAGCC TTTCTCTTTATGGAT Shew_0705 799500 - 800441 + | hypothetical protein TERM 755 800449 - 800494 + T 100 -13.7 -3.89291 | opp_overlap 800455, overlap 800455 GTAACTAGGGGGTAA CAA-AAAGGCTCGGTACTGAA TTTGCC TTCAGT-CCGAGCCTTTGTTG TTCTTCTGCTGTTAG TERM 756 800455 - 800487 + T 100 -12.9 -4.60292 | gap 1, opp_overlap 800455, overlap 800449 AGGGGGTAACAAAAA GGCTCGGTACTGAA TTTGCC TTCAGT-CCGAGCC TTTGTTGTTCTTCTG TERM 757 800487 - 800455 - T 100 -12.9 -5.06816 | gap 1, opp_overlap 800449 800455 AGGGGGTAACAAAAA GGCTCGGTACTGAA TTTGCC TTCAGT-CCGAGCC TTTGTTGTTCTTCTG Shew_0706 801219 - 800542 - | short-chain dehydrogenase/reductase SDR TERM 758 801348 - 801331 - R 100 -11.3 -5.24129 | CCTGGGCAGAAAAAA GGGAAGC CGCG GCTTCCC CGATAAGTGGGTGCT Shew_0707 801841 - 801362 - | YbaK/prolyl-tRNA synthetase associated region Shew_0708 802786 - 801959 - | hypothetical protein TERM 759 803517 - 803491 - H 74 -10.9 -2.72558 | gap 1, overlap 803477 803480 AGAATCGCCTAACGA CTCGGATGGGAC TCCT GTCCC-CCCGAG CCTTAGCCATCGTCC TERM 760 803768 - 803782 + H 86 -7.2 -5.12068 | AATCTTTCTTATTTT CGATTA AGA TAATCG TTTTTATTCGATATA TERM 761 803935 - 803918 - H 77 -11.3 -2.52623 | overlap 803917 803915 CTGGGCTGACAACAG GCTTCGC CTCG GCGAAGC GCAATTAACCTGAAG TERM 762 804079 - 804068 - g 71 -7.2 -4.04318 | overlap 804075 CGCACAGATGACAAA GCCC AAAG GGGC TGCTGCCACTGGTAC TERM 763 804917 - 804903 - g 71 -11.4 -3.07816 | GCGGCAGGCATCGAA GCCCAG GGG CTGGGC TGGCACAACAAGTGT Shew_0709 803961 - 806231 + | catalase/peroxidase HPI TERM 764 806429 - 806407 - T 80 -8.4 -4.2123 | TAGTGACCGAAGAAA GTCGTGGGAT TCC ATCCCACACC CGGGCAAGGAGGACT TERM 765 806488 - 806478 - T 75 -4.6 -5.00616 | CTTCCTTGTAAAAAA GCCA GTT CGGC ATCCGTGCCTCTCGC TERM 766 806882 - 806908 + T 74 -10.9 -2.73123 | gap 1 GGATGATGGGCAAGG CTCGGG-GGGAC AGGA GTCCCATCCGAG TCGTTAGGCGATTTT TERM 767 807148 - 807161 + T 70 -9.5 -2.95476 | TCCCACGACTTACCT CGGCC GTAA GGCCG TATCTGCTAAGTGAT TERM 768 807355 - 807338 - T 84 -8.5 -4.36914 | GCTTGGCTCATAAAA GCGTAAA AAGG TTTACGC AGGAACCCTCTCCGT metH 811092 - 807370 - | B12-dependent methionine synthase Shew_0711 811422 - 812033 + | phosphoglycerate mutase TERM 769 812098 - 812072 - f 100 -15.1 -3.85522 | opp_overlap 812070 AATTTAGCATAATAA CCGGGCGCAGG GACCG CCTGCGCCGGG AGTATGGTGTCGAGA TERM 770 812462 - 812441 - g 71 -11.5 -3.19936 | overlap 812436 AAGGATCGAACCTAA GTGCAGGCG ATGG CGCCTGCGC GCGCCCGGCGCTGTC Shew_0712 812368 - 813342 + | ABC transporter-related protein TERM 771 814200 - 814216 + G 71 -11.5 -3.14344 | TGCGGCTATTGCTGC CGGGGCG TTT CGCCCTG TTGCTGACGGCCCTG Shew_0713 813329 - 814372 + | transport system permease protein TERM 772 815236 - 815216 - g 73 -12.5 -2.64422 | overlap 815206 AGATAGTGCAGATGA CCGGCGCCA TAT TGGCGGCGG CCGAGCTGAAGATGC cobT 814495 - 815523 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Shew_0715 815565 - 816332 + | cobalamin 5'-phosphate synthase Shew_0716 816329 - 816877 + | cobalbumin biosynthesis enzyme Shew_0717 816890 - 818494 + | cobyric acid synthase Shew_0718 818509 - 819138 + | cob(I)yrinic acid a,c-diamide adenosyltransferase Shew_0719 819519 - 820343 + | periplasmic binding protein Shew_0720 820401 - 820787 + | hypothetical protein TERM 773 821110 - 821098 - f 72 -7.7 -3.89614 | CCTAATGGGCAGAAA TCGAC TCG GTCGA GTAACGGACACTGTT Shew_0721 821137 - 822399 + | RND family efflux transporter MFP subunit Shew_0722 822411 - 822647 + | hypothetical protein TERM 774 822711 - 822701 - f 72 -3.2 -5.01422 | CGATACAAAAACAAA GGAT ACA ACCC ATGTTAACGATGAAA Shew_0723 822712 - 823434 + | ABC transporter-related protein Shew_0724 823446 - 824756 + | hypothetical protein Shew_0725 824767 - 825963 + | hypothetical protein TERM 775 826013 - 826050 + F 71 -7.8 -3.71527 | gap 1, opp_overlap 826013 GCTAAACAAGAGACA CCGAAAGCGTTTGCC CTTTTCATC GGCGG-CGCTTTCGG TTAGTTTGTTGCTCT Shew_0726 826091 - 827575 + | two component, sigma54 specific, Fis family transcriptional regulator Shew_0727 827575 - 828948 + | integral membrane sensor signal transduction histidine kinase TERM 776 828994 - 828965 - T 87 -13.7 -2.90688 | opp_overlap 828971, overlap 828971 CAAGCATTTTAGAGA CAAAAACACCGCC AGCT GGCGGTGTTTTTT TATCAGGCAAAGCCG TERM 777 828971 - 828988 + T 100 -12.7 -5.60993 | opp_overlap 828971 828965 TTTTAGAGACAAAAA CACCGCC AGCT GGCGGTG TTTTTTTATCAGGCA TERM 778 828988 - 828971 - T 100 -12.7 -5.03994 | opp_overlap 828971, overlap 828965 TTTTAGAGACAAAAA CACCGCC AGCT GGCGGTG TTTTTTTATCAGGCA Shew_0728 830051 - 829023 - | dihydroorotase Shew_0729 830300 - 832000 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 779 832032 - 832056 + F 100 -12.1 -4.54727 | opp_overlap 832034, overlap 832034 TGATTTAGTTATAGA TAGGCGGGGCA TCT TGCCCCGTCTC TTTTCCTTTGCGACA TERM 780 832054 - 832034 - f 83 -12.5 -3.01119 | opp_overlap 832032 832034 ATTTAGTTATAGATA GGCGGGGCA TCT TGCCCCGTC TCTTTTCCTTTGCGA TERM 781 832034 - 832054 + F 100 -14.7 -3.88396 | opp_overlap 832034, overlap 832032 ATTTAGTTATAGATA GGCGGGGCA TCT TGCCCCGTC TCTTTTCCTTTGCGA Shew_0730 832089 - 832517 + | protein of unknown function DUF395, YeeE/YedE Shew_0731 832526 - 832996 + | protein of unknown function DUF395, YeeE/YedE TERM 782 832994 - 833004 + F 74 -4 -4.9725 | GGGCCGATAGAGGCC TAAG CGG CTTA TTTTTATGTAAAAGT Shew_0732 833279 - 834619 + | diguanylate cyclase with PAS/PAC sensor Shew_0733 835405 - 834650 - | hypothetical protein Shew_0734 836095 - 835643 - | Fe-S metabolism associated SufE Shew_0735 837327 - 836116 - | SufS subfamily cysteine desulfurase TERM 783 836358 - 836329 - G 74 -10.6 -3.59979 | GCCGGTGAGGTTAAA GGCCACGGCGCC GACATT GTCGCCGTGGGC GCCATAGAGGCTGAT TERM 784 837390 - 837361 - R 100 -15.1 -5.63517 | GGTTCAAACAAAAAA GGCGCTCAGATCT TGGG AGATCTCAGCGCC TAATGCAAGTTCAAT Shew_0736 838472 - 837432 - | aldo/keto reductase TERM 785 838559 - 838541 - R 80 -9 -4.15197 | GAAACACTAGATAAA TTACTTCA TGG TGAAGTAA CAAAATATCTCAATG Shew_0737 839564 - 838596 - | MarR family transcriptional regulator TERM 786 839313 - 839358 + g 80 -11.1 -3.86346 | CAGCTGGCTCACGGC GCGGCTGGCATTGGACTTG TCGATATT CAGGGCCAGGGCCAGCTGC TTTATCGACAGCTCC Shew_0738 840318 - 839701 - | NTPase TERM 787 840688 - 840672 - H 90 -9.3 -4.59773 | CGCCAGGCGGAAAAA CGCCGCG GGG CGGGGCG TCGAAACACTCAGAT Shew_0739 840729 - 842000 + | aromatic amino acid permease TERM 788 842045 - 842005 - f 70 -10.4 -2.52464 | gap 1, opp_overlap 842042 TGCTCTCTTAATCGA CTCATGTTACGCCCGGCGA CTCT CCGCCGGGCGAATC-TAAG TGGAAGCATTTATGG TERM 789 842764 - 842780 + G 71 -11.5 -3.09327 | GCCGCTGCGGGTGCC GCGTCGG GCA CCGGCGC TGTTCCGTCAGCTGG TERM 790 842917 - 842941 + G 81 -13.5 -3.37556 | opp_overlap 842879 842878 842915, overlap 842936 CTCACCGACCAATGG CGCGGCGGGGA TCA TCCCGGCCGTG TTGGCTTATTTTGAC Shew_0740 842057 - 843424 + | L-serine dehydratase 1 TERM 791 843467 - 843498 + T 100 -13.2 -3.90588 | opp_overlap 843476, overlap 843476 TATGCGCCGGAGCCA TAAAAAAAACGCCC ATCA GGGCGTTTTTTATA TTTGGTTACCGGCTA TERM 792 843476 - 843489 + T 100 -9.5 -5.5762 | opp_overlap 843476, overlap 843467 GAGCCATAAAAAAAA CGCCC ATCA GGGCG TTTTTTATATTTGGT TERM 793 843489 - 843476 - T 100 -9.5 -5.96219 | opp_overlap 843476 843467 GAGCCATAAAAAAAA CGCCC ATCA GGGCG TTTTTTATATTTGGT Shew_0741 843954 - 843511 - | GCN5-related N-acetyltransferase Shew_0742 844096 - 844401 + | hypothetical protein TERM 794 844393 - 844410 + F 70 -9.1 -3.20573 | overlap 844391 GAATCTGCCTACTTC GAGGCCT GATG GGGCCTC TCTTGATATGAATCA Shew_0743 844566 - 845867 + | sodium:dicarboxylate symporter TERM 795 845955 - 845925 - T 78 -11.3 -2.88544 | opp_overlap 845933, overlap 845933 GCCGAGTTTTAGACA TAAAAAAACCGCC AATCA GGCGGTTTTTTTG TGTCGGCAATAGCGC TERM 796 845933 - 845947 + T 100 -8.5 -5.71712 | opp_overlap 845925 845933 TTAGACATAAAAAAA CCGCC AATCA GGCGG TTTTTTTGTGTCGGC TERM 797 845947 - 845933 - T 100 -8.5 -5.76633 | opp_overlap 845933, overlap 845925 TTAGACATAAAAAAA CCGCC AATCA GGCGG TTTTTTTGTGTCGGC Shew_0744 846384 - 845971 - | protein of unknown function DUF306, Meta and HslJ Shew_0745 846568 - 846807 + | hypothetical protein Shew_0746 847777 - 846833 - | diguanylate cyclase TERM 798 847906 - 847926 + r 74 -2 -5.22943 | gap 1, overlap 847890 847909 GAGAATGTAAATTTT CA-ATTTTG CGAG CAAAATCTG TTTTTTCGATTTCCT Shew_0747 848940 - 847984 - | GGDEF domain-containing protein TERM 799 849236 - 849256 + G 70 -11.1 -2.94218 | overlap 849254 TTGTTGCTGGCCGAA GTCGGCGGT GAG ATCGCCGGC TATGTGATCGCCGGT TERM 800 849470 - 849458 - g 74 -7.7 -4.20918 | GCCAAGCTCAAGAAA GAGGT GGC ACCTC AATATTCCTACATGG Shew_0748 849062 - 849622 + | acetyltransferase Shew_0749 849694 - 850038 + | hypothetical protein Shew_0750 850101 - 850538 + | hypothetical protein TERM 801 850588 - 850560 - T 82 -12.6 -2.91912 | gap 1, opp_overlap 850567, overlap 850567 TCATTGACCCAGATA CAAAAAAGCCGCC AAAG GGCGGCTTTTT-G CTGACTGGCAAAACC TERM 802 850567 - 850582 + T 100 -11.8 -4.7497 | opp_overlap 850560 850567 CCCAGATACAAAAAA GCCGCC AAAG GGCGGC TTTTTGCTGACTGGC TERM 803 850582 - 850567 - T 100 -11.8 -5.4251 | opp_overlap 850567, overlap 850560 CCCAGATACAAAAAA GCCGCC AAAG GGCGGC TTTTTGCTGACTGGC TERM 804 850618 - 850602 - T 72 -7.3 -4.11216 | TGCTGACTGGCAAAA CCAAGCT TAC AGCTTAG CGTCTGCGCGCAGGG Shew_0751 851759 - 850608 - | S-adenosylmethionine synthetase Shew_0752 852283 - 854277 + | transketolase TERM 805 854325 - 854296 - f 80 -9.3 -4.10657 | opp_overlap 854286 854305, overlap 854297 CTAGAGCCTGCAAAA GGGCATAGGGCAA GCAG TTGCTCTATGCCA TGATGACTCGGCTTA TERM 806 854324 - 854297 - f 83 -12.8 -3.06073 | opp_overlap 854286 854305, overlap 854296 TAGAGCCTGCAAAAG GGCATAGGGCAA GCAG TTGCTCTATGCC ATGATGACTCGGCTT TERM 807 854334 - 854357 + F 95 -13.2 -3.32844 | opp_overlap 854349, overlap 854286 TATGCCATGATGACT CGGCTTATCG ATAA CGATAGGCCG TTGTCGCATCAAGAA Shew_0753 854411 - 855427 + | erythrose 4-phosphate dehydrogenase pgk 855530 - 856705 + | phosphoglycerate kinase TERM 808 856747 - 856767 + F 72 -7.5 -4.07868 | opp_overlap 856735 856736 AACCGCCGATAGTCG GGTCGCAAG GAG TTCGCGACC TTTCTGTCGGTATCA TERM 809 856809 - 856840 + F 77 -11.6 -2.64759 | gap 1, overlap 856808 856807 AACGATAGTGACCTC GGTGGTTAAGCGGGC ATG GCCCGATT-GCCACC CTATTATTGGAGTTA Shew_0755 856859 - 857923 + | fructose-1,6-bisphosphate aldolase TERM 810 857971 - 857951 - f 80 -6.7 -4.88228 | opp_overlap 857952, overlap 857952 ACCCAATATGAAAAA GGCCCGCCA ATT TGGTGGGCT TTTTTTATGGTAAAA TERM 811 857970 - 857952 - f 77 -10.2 -3.51853 | opp_overlap 857952, overlap 857951 CCCAATATGAAAAAG GCCCGCCA ATT TGGTGGGC TTTTTTTATGGTAAA TERM 812 857952 - 857970 + F 100 -12.4 -5.67063 | opp_overlap 857951 857952 CCCAATATGAAAAAG GCCCGCCA ATT TGGTGGGC TTTTTTTATGGTAAA Shew_0756 858135 - 858875 + | hypothetical protein TERM 813 858899 - 858916 + F 100 -9.1 -5.71712 | opp_overlap 858899 858901 TTATTGGACTTAAGA GACGCCT TTCG GGGCGTC TTTTTTTGTCTGAAA Shew_0757 859122 - 859577 + | putative transcriptional regulator, CadC TERM 814 859747 - 859724 - T 100 -8.9 -5.71712 | gap 1 GCGGACATAAAAAAA GGGCCA-CAC GCTAG GTGATGGCCC TCAAAGTGGTGCAGT Shew_0758 860287 - 859766 - | hypothetical protein Shew_0759 861120 - 860299 - | cytochrome c, putative TERM 815 861272 - 861290 + H 79 -11.7 -2.74196 | overlap 861257 861259 861265 861271 GGCGCGCATCTGCCT GCGCCGA TTTTT TCGGCGC CTTGTATCGATTTAA Shew_0760 861579 - 862400 + | response regulator receiver protein Shew_0761 862393 - 862914 + | hypothetical protein TERM 816 863186 - 863204 + G 83 -12.4 -3.76224 | overlap 863187 CCTCCGGGCTGCATC TGCCCCTG GTG CAGGGGCG TTTCATCAGTCAGAA TERM 817 863187 - 863203 + G 76 -13.7 -2.8552 | overlap 863186 CTCCGGGCTGCATCT GCCCCTG GTG CAGGGGC GTTTCATCAGTCAGA Shew_0762 862984 - 864405 + | hypothetical protein TERM 818 864462 - 864472 + T 76 -4 -5.16572 | overlap 864468 TAGCTAGTCGTAGCC TTGA CCT TCAA TTTTTTGAATTGCCT TERM 819 866702 - 866712 + T 83 -5.4 -5.19261 | CTCCCTATTAAATGG CTGA TGC TCAG TTTTTTACTAAATTT TERM 820 866971 - 866945 - T 75 -11 -2.85297 | opp_overlap 866942 866964, overlap 866942 866940 CCAGTGTAAACACGA TTTTGGCCCT CGGCGGC AGGGCCAAAA ATGTTCCCTACATTT Shew_0763 869619 - 867403 - | putative PAS/PAC sensor protein Shew_0764 870408 - 869806 - | radical SAM domain-containing protein TERM 821 870126 - 870138 + g 76 -6.9 -4.68124 | overlap 870125 870127 TGTTGACCCGCACCC TGCCG CCG CGGCG TTTTATCTCTCTTGC TERM 822 870530 - 870514 - R 100 -13.7 -4.72272 | opp_overlap 870509 CTGCTGGATCAAAAA GGGAGGC TAA GCCTCCC TTCGAATTTAGATTG Shew_0765 873696 - 870547 - | acriflavin resistance protein Shew_0766 874919 - 873696 - | RND family efflux transporter MFP subunit TERM 823 875110 - 875093 - R 100 -10.5 -5.61596 | opp_overlap 875093 ATCGCCATAAAAAAA GCGCCCC CAAA GGGACGC TTAATTGCCGAGACG Shew_0767 876408 - 875149 - | ATP-dependent RNA helicase SrmB TERM 824 876058 - 876098 + g 77 -13.4 -2.91912 | gap 2, opp_overlap 876039, overlap 876060 876061 GCCCGTGATGATGGC GATAT-CCAGCC-CCAGGCC GGT GGCCAGGTGGCTGGCGTATC TGTGTACCTGGCTGG Shew_0768 877190 - 876459 - | methyltransferase small TERM 825 878000 - 878030 + G 74 -6.8 -4.37886 | overlap 878002 CCGCGCCTCGTGCCG GTCTGGTGGCCTAT GAG ATGGGCTACAAGCC TTTTATCCAAGATGC Shew_0769 877699 - 879030 + | branched-chain amino acid transport system II carrier protein TERM 826 879086 - 879058 - f 73 -10.3 -3.09785 | opp_overlap 879059 CCATAGCGTAAGATA GCGGTGTTAACTC TAA GAGTTAGCACCGT TTTTGTATCTAAAGG TERM 827 879059 - 879085 + F 100 -16 -5.03994 | opp_overlap 879058 CATAGCGTAAGATAG CGGTGTTAACTC TAA GAGTTAGCACCG TTTTTGTATCTAAAG Shew_0770 879109 - 880020 + | tyrosine recombinase XerD TERM 828 880336 - 880309 - g 71 -9.2 -3.73072 | gap 1, overlap 880312 AATGGCGGCATCAAA CAACGTGGTCGAC AAT GGCGACCA-GTTG AAGCAGAAATTATCA Shew_0771 880241 - 880966 + | thiol:disulfide interchange protein DsbC TERM 829 880987 - 881004 + F 100 -11.3 -5.76949 | opp_overlap 880987 TAATGCGCGAAACAA GGTGAGC CTGG GCTCACC TTTTTTTTGGCCATC TERM 830 881004 - 880987 - f 91 -11.3 -3.9243 | opp_overlap 880987 TAATGCGCGAAACAA GGTGAGC CTGG GCTCACC TTTTTTTTGGCCATC TERM 831 881518 - 881490 - g 70 -10.9 -3.30441 | overlap 881509 GATCACCGTCGATAA CGGCATCTCCTCC ATC GAAGGGGTTGCCG CGGCCAAGGCGCTGG Shew_0772 881086 - 882810 + | single-stranded-DNA-specific exonuclease RecJ TERM 832 882842 - 882802 - T 72 -9.7 -3.14468 | opp_overlap 882802, overlap 882807 GTGGAGCAGATCGAA CCTAAGTAGCTTCGGTAAT ATT ACTGCCGGCGCCACTTAGG GCACTGCTGGAATCA TERM 833 882920 - 882905 - T 100 -10.4 -5.4833 | opp_overlap 882905 882898 TGAGGCAATAAAAAA GTCGCC AATT GGCGAC TTTCTACTTTTTAAA TERM 834 882905 - 882920 + T 85 -10.4 -4.2687 | opp_overlap 882905, overlap 882898 TGAGGCAATAAAAAA GTCGCC AATT GGCGAC TTTCTACTTTTTAAA Shew_0773 883938 - 882949 - | fructose-1,6-bisphosphatase TERM 835 885056 - 885074 + G 74 -10.3 -3.64703 | GGTGAAGTGGTTGCC CGACAGC CTGCA GCTGTCG TTTCAATGGCAGAGC Shew_0774 884145 - 886397 + | peptidase S9B dipeptidylpeptidase IV subunit TERM 836 886462 - 886424 - T 100 -13.3 -4.2558 | opp_overlap 886429, overlap 886429 TAGGCCTTAGCAAAA CAAAAGCCCTGTTGCTT ATTGA AAGCAGCAGGGCTTTTT GTTGTGAGAGTCGTA TERM 837 886429 - 886457 + T 100 -15.4 -5.18726 | opp_overlap 886429 886424 CTTAGCAAAACAAAA GCCCTGTTGCTT ATTGA AAGCAGCAGGGC TTTTTGTTGTGAGAG TERM 838 886457 - 886429 - T 100 -13.2 -5.13722 | opp_overlap 886429, overlap 886424 CTTAGCAAAACAAAA GCCCTGTTGCTT ATTGA AAGCAGCAGGGC TTTTTGTTGTGAGAG Shew_0775 887099 - 886542 - | TetR family transcriptional regulator Shew_0776 887199 - 887735 + | deaminase-reductase domain-containing protein TERM 839 887863 - 887834 - T 75 -10.7 -2.90212 | opp_overlap 887833 CTAGGATTTTAGACA TTCCTCACTTCCC TGTG GGGCAGGGAGGAA ATGCCTTGAAATGTC TERM 840 887947 - 887964 + T 100 -11.3 -4.7373 | opp_overlap 887947 TCCATGTACAAAAAA GCCAGTC GTTA GACTGGC TTTTTAATCGAATCA TERM 841 887964 - 887947 - T 100 -11.3 -5.28176 | opp_overlap 887947 TCCATGTACAAAAAA GCCAGTC GTTA GACTGGC TTTTTAATCGAATCA Shew_0777 888722 - 888003 - | two-component response regulator Shew_0778 889300 - 889731 + | hypothetical protein Shew_0779 890141 - 891499 + | aspartate kinase III Shew_0780 891496 - 892602 + | succinylglutamate desuccinylase/aspartoacylase TERM 842 892676 - 892705 + T 87 -13.7 -3.05819 | opp_overlap 892682, overlap 892682 TTTCGCGTTATCAAT AAAAAAGGGAGCC AAGT GGCTCCCTTTTTC TGTTCAAGCTATCTG TERM 843 892682 - 892699 + T 100 -12.7 -5.0916 | opp_overlap 892682, overlap 892676 GTTATCAATAAAAAA GGGAGCC AAGT GGCTCCC TTTTTCTGTTCAAGC TERM 844 892699 - 892682 - T 100 -12.7 -5.5112 | opp_overlap 892676 892682 GTTATCAATAAAAAA GGGAGCC AAGT GGCTCCC TTTTTCTGTTCAAGC Shew_0781 896573 - 892722 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 845 896617 - 896597 - R 75 -8.4 -3.81488 | opp_overlap 896597 896595 CCTTGTCAAATAGAA GTGTTTTG AGACA CAAAACAC TATTGGTATTGCTGT TERM 846 896789 - 896758 - R 75 -11 -2.84325 | gap 1, opp_overlap 896758, overlap 896753 896755 896769 GGTTTTTAAATAGTA GTATCCACTAAGGCT GTA AGCCCCAGTGG-TAC TGGATTAAGGCTTCA Shew_0782 897255 - 896794 - | DNA-binding transcriptional regulator AsnC Shew_0783 898067 - 897390 - | pseudouridylate synthase Shew_0784 898448 - 898161 - | hypothetical protein Shew_0785 899004 - 898474 - | methyltransferase type 12 TERM 847 898504 - 898520 + gr 73 -10.1 -3.07013 | GCGGCCAATATATTG CGCCTTG AAG CAGGGCG TCTCTTCACAGCCTA Shew_0786 899395 - 898979 - | hypothetical protein Shew_0787 899614 - 900603 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 848 900642 - 900679 + F 70 -10.5 -2.53263 | ACCTCTTTAGTTTCA TCAGCCGGGTTTCACCT GACA AGGGGAGCCCAGGCTGA TAACTTAGGGATAAG Shew_0788 900718 - 901455 + | dienelactone hydrolase TERM 849 901517 - 901477 - T 100 -15.7 -3.45031 | opp_overlap 901488, overlap 901488 TGCGTAAAAAGTGAA TAGAACAAAAAGGCGAACC TAA GGTTCGCCTTTTTACTTTA GTCGAGACAATCTGC TERM 850 901488 - 901506 + T 100 -14.6 -5.01811 | opp_overlap 901488 901477 TGAATAGAACAAAAA GGCGAACC TAA GGTTCGCC TTTTTACTTTAGTCG TERM 851 901506 - 901488 - T 100 -14.6 -5.29716 | opp_overlap 901488, overlap 901477 TGAATAGAACAAAAA GGCGAACC TAA GGTTCGCC TTTTTACTTTAGTCG Shew_0789 902513 - 901545 - | Mg2+ transporter protein, CorA family protein Shew_0790 903081 - 902530 - | hypothetical protein Shew_0791 903429 - 904172 + | spermine synthase TERM 852 904165 - 904187 + F 77 -11.3 -2.56591 | opp_overlap 904163, overlap 904164 CCCGCTTCGAAACCT GGGAGTGAG AGCGA CTCGCTCCC CTTAATCGGTTTTAT Shew_0792 904370 - 904939 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 853 905025 - 905060 + F 86 -8.2 -4.75356 | CATCATTCTTTTTCA TTGCCGGTTCACCTCC CCCT GCATGCGAGCCGGCAA TTTTTCCCTATGTTT TERM 854 905076 - 905097 + F 85 -7.9 -4.73388 | overlap 905077 TTTTTCCCTATGTTT TTGGCTCCC TTAT GGGGGCCAC TTTTTCCTAGGAGTT TERM 855 905077 - 905096 + F 85 -11.4 -3.4331 | overlap 905076 TTTTCCCTATGTTTT TGGCTCCC TTAT GGGGGCCA CTTTTTCCTAGGAGT TERM 856 906042 - 906023 - g 71 -9.2 -3.72141 | AGATCCAGACCGAAA GCGGCGCA CTGC TGCGCAGC AAGACTGTACTACTG Shew_0793 905116 - 906681 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 857 906726 - 906706 - f 80 -6.8 -4.77775 | opp_overlap 906706 ATGCCACAAAATAAA CAGTCAGC TTTAT GCTGGCTG TTTTTTTTTTCGTCT TERM 858 906706 - 906726 + F 100 -9 -6.43839 | opp_overlap 906706 ATGCCACAAAATAAA CAGTCAGC TTTAT GCTGGCTG TTTTTTTTTTCGTCT Shew_0794 906794 - 907978 + | diguanylate cyclase TERM 859 907970 - 908009 + T 77 -11.5 -2.55565 | gap 1, overlap 907969 907967 907967 GTCGTCAGTTCCTAC CT-GTCTTGAGGGCGCCT CTGGA AGGCGCCCATAAGGCTAG CTGTATTTGGCGTCT Shew_0795 908410 - 908006 - | hypothetical protein TERM 860 908492 - 908512 + r 77 -9.7 -3.59979 | opp_overlap 908494 CTTGATATCTGTAAC CAGCTTTGG CGC CCAATGCTG TTTGAGATGCACGCC TERM 861 908692 - 908676 - R 100 -12.3 -5.61596 | opp_overlap 908676, overlap 908662 908659 AGGGCCATAAAAAAA GCCCTCA TGA TGAGGGC TTTGCGAAGTTCGCT TERM 862 908676 - 908692 + r 95 -12.3 -3.5774 | opp_overlap 908662 908659 908676 AGGGCCATAAAAAAA GCCCTCA TGA TGAGGGC TTTGCGAAGTTCGCT Shew_0796 908910 - 908713 - | hypothetical protein TERM 863 908938 - 908972 + r 79 -11.7 -2.62263 | opp_overlap 908926, overlap 908943 AAACTGGGTGAGAGC CTATAGTTAACCGAT TATGT ATAGGTTAACTATAG TGCTATCGGCAGCGT Shew_0797 910432 - 909014 - | hypothetical protein Shew_0798 911424 - 910987 - | hypothetical protein Shew_0799 911729 - 912214 + | MarR family transcriptional regulator Shew_0800 912248 - 913489 + | FAD dependent oxidoreductase rumB 913532 - 914671 + | 23S rRNA methyluridine methyltransferase TERM 864 914785 - 914759 - f 74 -7.2 -4.15565 | gap 1 GCCAGTATTTCAAAA GGCTGCG-CGC AACTTA GCGGCGCGGCC AAATCTCGGCTCGGG Shew_0802 914820 - 916028 + | chromate transporter Shew_0803 917301 - 916063 - | integral membrane sensor signal transduction histidine kinase Shew_0804 918002 - 917298 - | two component transcriptional regulator Shew_0805 918394 - 917999 - | hypothetical protein Shew_0806 919229 - 918384 - | MltA-interacting MipA family protein TERM 865 924817 - 924774 - g 79 -8.8 -4.30576 | opp_overlap 924776, overlap 924788 CGCCGATGAGCAAAA CAGCGTTAACCAGATCACCG TTAC CGGTGAGCACATTACCGCTG TGGTCGATGGCCATA Shew_0807 919978 - 925095 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 866 925233 - 925260 + F 100 -15 -5.47159 | opp_overlap 925231 ATTACTGAAGTGATT GCCAGTATTCCA GGGA TGGAATGCTGGC TTTTTTATGTTAGGC Shew_0808 925401 - 927065 + | methyl-accepting chemotaxis sensory transducer TERM 867 927148 - 927127 - T 100 -10.1 -5.38958 | opp_overlap 927127 AGCCACAAAGAAAAA GGCCACAAC TCCT GTTGGGGCC TTTTTTACTACGTTA TERM 868 927127 - 927148 + T 100 -10.1 -5.18357 | opp_overlap 927127 AGCCACAAAGAAAAA GGCCACAAC TCCT GTTGGGGCC TTTTTTACTACGTTA Shew_0809 931403 - 927171 - | formate dehydrogenase, alpha subunit TERM 869 927342 - 927392 + g 71 -11.9 -2.77344 | opp_overlap 927342, overlap 927328 927341 GCGGCGCGTGACGAA GGCGGCGATGTTGATGCTGCCG-CG TCT CGTCGACAGAGTCAGCA-CGTCGCC GTTGTTCACCCCTAG TERM 870 927437 - 927454 + g 75 -12.7 -3.02511 | opp_overlap 927434, overlap 927422 TGGCCGACATCATCA CCCTGGG CGAC CCCAGGG TATTGAGGCCGTCCG TERM 871 929052 - 929083 + g 71 -11.6 -3.14602 | gap 1, overlap 929050 929061 CAGCTCGCCATCTTT GCGCAGCAGCGGCTG GGT CAGACGTTGCTG-GC TGTTGATGAAGTCAA TERM 872 930956 - 930939 - G 73 -8.3 -4.11216 | GGCCGATTCGCAAAA GGCCGGG CAGA CACGGCC GATAGAGAGCGGTAG TERM 873 931122 - 931136 + g 71 -9.2 -3.72576 | overlap 931123 CAAAAGGTGTTTCAG TGCCGC CTG GCGGCG TTTGCTGAGGGCGGC Shew_0810 932649 - 931669 - | ion transport 2 domain-containing protein TERM 874 932701 - 932679 - H 80 -9 -4.08216 | CCAGCCTGCCGAAAA GGGGCGGGGA TTC TCCCCGCTGC CGGAGCCGGGCAAGA Shew_0811 933056 - 933937 + | peptide chain release factor 2 lysS 933950 - 935452 + | lysyl-tRNA synthetase TERM 875 935476 - 935491 + F 100 -10.4 -5.72616 | opp_overlap 935476 CGCTTAAGAAAAAAA CCAGCC CCAG GGCTGG TTTTTTTATCTGCGT TERM 876 935491 - 935476 - f 100 -10.4 -5.7946 | opp_overlap 935476 CGCTTAAGAAAAAAA CCAGCC CCAG GGCTGG TTTTTTTATCTGCGT TERM 877 935585 - 935608 + F 80 -4.4 -5.24531 | opp_overlap 935585 ATTTCTAGTATAAGA TGGGTTGGGC CGCT GCCCGCGCCA TTTTTTGTCGGGGCT TERM 878 936204 - 936189 - g 74 -11.8 -3.11207 | overlap 936187 CAGTTAATAGAGATA GCGCCG CAAG CGGCGC CGAATGTGGATCTGC TERM 879 936782 - 936746 - g 70 -9.9 -3.40403 | opp_overlap 936732 936755 CGGCCGTCACGACAA GGCCTTCTTCGAGCGCC TGT GGCGCTCGTTGCTGACC AACGGCAAGTGGCAC TERM 880 936755 - 936773 + G 85 -16 -3.14132 | opp_overlap 936746 CGACAAGGCCTTCTT CGAGCGCC TGT GGCGCTCG TTGCTGACCAACGGC Shew_0813 935718 - 938231 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Shew_0814 938824 - 938276 - | pseudouridine synthase Shew_0815 939182 - 939988 + | glucosamine-6-phosphate isomerase TERM 881 940010 - 940033 + F 87 -8.8 -4.51238 | opp_overlap 940010 CTATTGGTAAACAAA GGGCGTCTCT CACT GGAGGTGCCC TTTCTGTTTTGTGGC TERM 882 940046 - 940065 + F 100 -13.6 -3.99374 | CCCTTTCTGTTTTGT GGCCTTGC CATG GCAAGGCC TTGTTATTAATCGGC Shew_0816 940252 - 940788 + | hypothetical protein Shew_0817 940800 - 941117 + | cupin 2 domain-containing protein Shew_0818 941285 - 943198 + | peptidase U32 Shew_0819 943239 - 943613 + | hypothetical protein TERM 883 943655 - 943674 + T 100 -10.7 -5.08088 | CCTCGTTATTTTTAA GCCCAGG CCTAGC CCTGGGC TTTTTGTTGCCAGTT Shew_0820 944850 - 943663 - | hypothetical protein Shew_0821 945294 - 945007 - | mitomycin resistance protein TERM 884 945257 - 945227 - G 79 -7.6 -4.58395 | gap 1, opp_overlap 945214 CCGAGTTTGTAAAAA TCCTCCGACGTGG CCTTAC CCACGTTGG-GGA TCATGGTGAACTCTG Shew_0822 945954 - 945361 - | lysine exporter protein LysE/YggA Shew_0823 947106 - 946201 - | LysR family transcriptional regulator Shew_0824 947238 - 947879 + | NAD-dependent epimerase/dehydratase TERM 885 947935 - 947919 - T 100 -12.3 -5.93252 | opp_overlap 947919 CTGAAAAACAAAAAA GCCACTC TAT GAGTGGC TTTTTTAATGGCTTT TERM 886 947919 - 947935 + T 100 -12.3 -5.19261 | opp_overlap 947919 CTGAAAAACAAAAAA GCCACTC TAT GAGTGGC TTTTTTAATGGCTTT TERM 887 947965 - 948023 + T 71 -5 -4.55798 | overlap 947950 947946 947969 TTGGCTCAGCCTATG GCTTTTGGCTCAGCCTATGGCTTTTGGC TCA GCCTATGGCTTTTGGCTCAGCCTATGGC TTTTGATTTGGCCTA Shew_0825 948695 - 948036 - | ribose-5-phosphate isomerase A TERM 888 948105 - 948134 + g 73 -12.9 -2.59154 | opp_overlap 948107 948129, overlap 948104 948107 GCCGCGGTTGGCGAA CAGGCCGTTGGTG ACCA CACCAACGATCTG ATTGATCTGCTCTTC TERM 889 948655 - 948671 + g 90 -5 -5.40004 | overlap 948654 TCTACATACTCGAGC GCGGCC CATCC GGCGGC TTTTTTCATTTCATC TERM 890 949250 - 949268 + G 71 -8.1 -3.89346 | TATCTTGGTCCCGGC GGCGCTG CTGAT CAGTGCC TTTATCCCCTGGGCG TERM 891 949281 - 949293 + G 74 -6.9 -4.43681 | overlap 949280 GCCTTTATCCCCTGG GCGGT GAC GCCGC TTTTGATGTTCGGTG Shew_0826 949026 - 949949 + | hypothetical protein Shew_0827 950060 - 950707 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type Shew_0828 951605 - 950712 - | LysR family transcriptional regulator TERM 892 951312 - 951287 - G 74 -11.1 -3.35046 | gap 1, opp_overlap 951300 951302, overlap 951285 TGATGGGGGCAAACA GCTCGGCGCTGC CCA GCGGCGCC-AGC CCCAGTTTTAGTATG Shew_0829 951706 - 952125 + | LrgA family protein Shew_0830 952139 - 952828 + | LrgB family protein TERM 893 952820 - 952851 + T 71 -7.9 -3.76582 | overlap 952846 CTATTCGCCTATCTG CTGGTCTAGCCGG GCGTTA CCGGCTTGAGCGG TTGTCTGTTCTGTTG Shew_0831 953288 - 952869 - | CBS domain-containing protein Shew_0832 953647 - 955419 + | alkaline phosphatase TERM 894 955440 - 955456 + F 100 -10.8 -5.22039 | opp_overlap 955440 ATTTAAGCCGACAAA GCCGCC CTCGA GGCGGC TTTTTTACCTTTAAA TERM 895 955456 - 955440 - f 91 -11.5 -3.9279 | opp_overlap 955440 ATTTAAGCCGACAAA GCCGCCC TCG AGGCGGC TTTTTTACCTTTAAA Shew_0833 955682 - 956248 + | hypoxanthine-guanine phosphoribosyltransferase TERM 896 956264 - 956313 + T 100 -18.3 -3.77588 | opp_overlap 956271 956280, overlap 956280 CGCGTTAAGCCATGA TTAGTAACATAAAAAATGCCACT CTAG GGTGGCATTTTTTATGCTGCTAA TTCTTGCTCTAGCCT TERM 897 956306 - 956271 - T 100 -16.5 -3.23395 | opp_overlap 956264 956280, overlap 956280 AGCCATGATTAGTAA CATAAAAAATGCCAC TCTAGG GTGGCATTTTTTATG CTGCTAATTCTTGCT TERM 898 956280 - 956297 + T 95 -7.7 -5.32882 | opp_overlap 956271 956280, overlap 956264 TAGTAACATAAAAAA TGCCACT CTAG GGTGGCA TTTTTTATGCTGCTA TERM 899 956297 - 956280 - T 100 -7 -5.49569 | opp_overlap 956280 956264, overlap 956271 TAGTAACATAAAAAA TGCCAC TCTAGG GTGGCA TTTTTTATGCTGCTA Shew_0834 956543 - 956331 - | hypothetical protein Shew_0835 959337 - 956689 - | peptidase M1, membrane alanine aminopeptidase TERM 900 959566 - 959535 - R 86 -12.6 -3.20322 | gap 1, opp_overlap 959543, overlap 959543 GCCGATGACAAGAGA TA-AAAAAACCAGCC TTG GGCTGGTTTTTTATA GGAACTGCTGGCTTA TERM 901 959543 - 959557 + r 100 -11.4 -5.24531 | opp_overlap 959543 959535 CAAGAGATAAAAAAA CCAGCC TTG GGCTGG TTTTTTATAGGAACT TERM 902 959557 - 959543 - R 100 -11.4 -5.80248 | opp_overlap 959543, overlap 959535 CAAGAGATAAAAAAA CCAGCC TTG GGCTGG TTTTTTATAGGAACT Shew_0836 960172 - 959579 - | membrane lipoprotein lipid attachment site Shew_0837 961607 - 960198 - | TPR repeat-containing protein Shew_0838 961884 - 961672 - | SlyX family protein Shew_0839 962866 - 961898 - | WD-40 repeat-containing protein TERM 903 963788 - 963775 - g 71 -8.1 -3.91897 | CTTTCTATCGAGAAA GCTGC GCCA GCAGC AGAAGAAGCCGCAGC Shew_0840 963046 - 963813 + | peptidylprolyl isomerase, FKBP-type TERM 904 963806 - 963796 - f 71 -8.2 -3.85864 | CCAGCAGCAGAAGAA GCCG CAG CGGC TAAGTAAGCCATGCT TERM 905 963855 - 963838 - f 71 -8.3 -3.55071 | opp_overlap 963839, overlap 963839 CTATAGGTTTGGAAA GGGGCGC TTAG GCGCCCT TTTTTGTGGCCGAAA TERM 906 963839 - 963854 + F 100 -11.8 -5.24129 | opp_overlap 963838 963839 TATAGGTTTGGAAAG GGGCGC TTAG GCGCCC TTTTTTGTGGCCGAA TERM 907 963854 - 963839 - f 79 -11.8 -2.72829 | opp_overlap 963839, overlap 963838 TATAGGTTTGGAAAG GGGCGC TTAG GCGCCC TTTTTTGTGGCCGAA Shew_0841 964006 - 964380 + | hypothetical protein TERM 908 964409 - 964436 + T 77 -11.4 -2.51074 | opp_overlap 964400 964409 964415, overlap 964409 964415 GGGAAATCTTGCAAA GAAAAAGGCAGC TCAG GCTGCCTTTTTA CGTTTTAGCTGTTTT TERM 909 964436 - 964409 - T 87 -11.4 -3.5936 | opp_overlap 964409 964409 964415, overlap 964400 964415 GGGAAATCTTGCAAA GAAAAAGGCAGC TCAG GCTGCCTTTTTA CGTTTTAGCTGTTTT TERM 910 964409 - 964437 + T 81 -11.2 -3.20264 | gap 1, opp_overlap 964400 964409 964415, overlap 964409 964415 GGGAAATCTTGCAAA G-AAAAAGGCAGC TCAG GCTGCCTTTTTAC GTTTTAGCTGTTTTG TERM 911 964430 - 964415 - T 100 -10.4 -5.27335 | opp_overlap 964409 964409 964415, overlap 964409 TCTTGCAAAGAAAAA GGCAGC TCAG GCTGCC TTTTTACGTTTTAGC TERM 912 964415 - 964430 + T 91 -10.4 -4.87318 | opp_overlap 964415 964409, overlap 964409 964409 TCTTGCAAAGAAAAA GGCAGC TCAG GCTGCC TTTTTACGTTTTAGC Shew_0842 965101 - 964472 - | two component LuxR family transcriptional regulator Shew_0843 966866 - 965163 - | nitrate/nitrite sensor protein NarQ TERM 913 966836 - 966815 - G 71 -4.5 -4.55798 | CACTGGAAAGTAAAA TTAAGGCCA GCAT TAACCTTAA TATGGTGGAGGTGAG TERM 914 967010 - 967029 + H 76 -6.4 -4.58283 | overlap 967012 TCAAGTTTTGACCCG GATACCCC ATAA GGGGTATA TTTTTAACGGGGTTA TERM 915 967012 - 967027 + H 79 -9 -3.90316 | overlap 967010 AAGTTTTGACCCGGA TACCCC ATAA GGGGTA TATTTTTAACGGGGT nrfA 967114 - 968514 + | cytochrome c nitrite reductase TERM 916 968557 - 968540 - T 100 -14.1 -4.34402 | opp_overlap 968540 CCCTGCATAGTAAAA GCCCCGG TTAT CCGGGGC TTTTTTATCTCTTCA TERM 917 968540 - 968557 + T 100 -14.1 -5.47431 | opp_overlap 968540 CCCTGCATAGTAAAA GCCCCGG TTAT CCGGGGC TTTTTTATCTCTTCA Shew_0845 969131 - 968589 - | isochorismatase hydrolase Shew_0846 969384 - 969722 + | nitrogen regulatory protein P-II Shew_0847 969735 - 970985 + | Rh family protein/ammonium transporter TERM 918 971026 - 971059 + F 100 -17.5 -4.75289 | opp_overlap 971028, overlap 971028 ACTGATAGTAGAATT AACAGGGTCCGTACC TCAT GGTGCGGACCCTGTC TTTTGTATTATGCTA TERM 919 971057 - 971028 - f 100 -17.9 -3.4878 | opp_overlap 971026 971028 TGATAGTAGAATTAA CAGGGTCCGTACC TCAT GGTGCGGACCCTG TCTTTTGTATTATGC TERM 920 971028 - 971057 + F 100 -20.1 -3.98053 | opp_overlap 971028, overlap 971026 TGATAGTAGAATTAA CAGGGTCCGTACC TCAT GGTGCGGACCCTG TCTTTTGTATTATGC Shew_0848 971105 - 971431 + | hypothetical protein Shew_0849 971524 - 972705 + | TPR repeat-containing protein TERM 921 972802 - 972829 + T 79 -9.9 -3.74251 | opp_overlap 972802 TAAGTCTTCTATAAA CCAAGGCAAAC AGGCAC GTATGCCTTGG TTTAATGACCGTATA TERM 922 972829 - 972802 - T 86 -10.6 -3.86822 | opp_overlap 972802 TAAGTCTTCTATAAA CCAAGGCAAACA GGCA CGTATGCCTTGG TTTAATGACCGTATA Shew_0850 973717 - 972890 - | hypothetical protein Shew_0851 974065 - 975117 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 923 975224 - 975195 - T 82 -12.3 -2.75963 | opp_overlap 975201, overlap 975201 ATGCCGACCTGAAAT GAAAAAGGAAGCC AATT GGCTTCCTTTTTT GCGTTCTGCTGGCCT TERM 924 975218 - 975201 - T 100 -11.3 -4.99134 | opp_overlap 975201, overlap 975195 ACCTGAAATGAAAAA GGAAGCC AATT GGCTTCC TTTTTTGCGTTCTGC TERM 925 975201 - 975218 + T 100 -11.3 -5.1925 | opp_overlap 975201 975195 ACCTGAAATGAAAAA GGAAGCC AATT GGCTTCC TTTTTTGCGTTCTGC Shew_0852 975418 - 975242 - | hypothetical protein Shew_0853 975818 - 977593 + | ABC transporter-related protein Shew_0854 977669 - 977926 + | hypothetical protein Shew_0855 978166 - 977957 - | hypothetical protein Shew_0856 978816 - 978280 - | phosphoglycerate mutase Shew_0857 978951 - 979550 + | hypothetical protein TERM 926 979575 - 979605 + F 89 -12 -3.68988 | opp_overlap 979582, overlap 979582 ACTCCCATTTGATTT CGATAAACCCCTTA AGA TAAGGGGTTTTTTG TTGTCTTGACTCGGA TERM 927 979582 - 979598 + F 100 -10.9 -5.64304 | opp_overlap 979582, overlap 979575 TTTGATTTCGATAAA CCCCTTA AGA TAAGGGG TTTTTTGTTGTCTTG TERM 928 979598 - 979582 - f 86 -10.9 -3.87815 | opp_overlap 979582 979575 TTTGATTTCGATAAA CCCCTTA AGA TAAGGGG TTTTTTGTTGTCTTG Shew_0858 979680 - 980420 + | oxidoreductase FAD/NAD(P)-binding subunit Shew_0859 980431 - 981030 + | glutathione S-transferase domain-containing protein Shew_0860 981579 - 981109 - | hypothetical protein Shew_0861 981749 - 982756 + | extracellular solute-binding protein TERM 929 982777 - 982808 + F 91 -10.2 -4.83615 | opp_overlap 982780, overlap 982778 982780 GGCGGTCATTGTTCA AAAGATAGCCTTCC TTCG GGAAGGCTATCTCG TTTTTATGCCGCATG TERM 930 982778 - 982807 + F 100 -13.7 -3.49687 | opp_overlap 982780, overlap 982777 982780 GCGGTCATTGTTCAA AAGATAGCCTTCC TTCG GGAAGGCTATCTC GTTTTTATGCCGCAT TERM 931 982805 - 982780 - f 100 -16.3 -4.09685 | opp_overlap 982778 982777 982780 GGTCATTGTTCAAAA GATAGCCTTCC TTCG GGAAGGCTATC TCGTTTTTATGCCGC TERM 932 982780 - 982805 + F 100 -16.3 -3.31915 | opp_overlap 982780, overlap 982778 982777 GGTCATTGTTCAAAA GATAGCCTTCC TTCG GGAAGGCTATC TCGTTTTTATGCCGC TERM 933 984307 - 984327 + G 73 -5.3 -4.57837 | overlap 984309 984320 984321 TATCGCGGATCCATC TACCACTGC TTC GCAGCGGCA TTTTTGCCGCCATCT Shew_0862 982914 - 984545 + | binding-protein-dependent transport systems inner membrane component Shew_0863 984547 - 985575 + | ABC transporter-related protein Shew_0864 985762 - 986706 + | Dyp-type peroxidase family protein TERM 934 986801 - 986772 - T 76 -10.9 -3.06796 | opp_overlap 986779, overlap 986779 TTCTAGCTTACCCAA TAAAAAACACACC CTAA GGTGTGTTTTTTT GTGTCCGATTATCGG TERM 935 986794 - 986779 - T 100 -9 -5.4833 | opp_overlap 986779, overlap 986772 TTACCCAATAAAAAA CACACC CTAA GGTGTG TTTTTTTGTGTCCGA TERM 936 986779 - 986794 + T 100 -9 -5.71712 | opp_overlap 986779 986772 TTACCCAATAAAAAA CACACC CTAA GGTGTG TTTTTTTGTGTCCGA Shew_0865 987279 - 986821 - | cupin 2 domain-containing protein TERM 937 987173 - 987195 + g 72 -4.1 -4.7497 | gap 1, opp_overlap 987176 987177, overlap 987176 987177 ACGCCGATCTGCTGA CA-ACCGGCG GCAT CGCCGATATG TTTTTGATGGCTGGC TERM 938 987437 - 987409 - R 100 -10.4 -5.72616 | gap 1, opp_overlap 987409 987411 ACTTAGATAAAAAAA CACCCTTT-GCCC AAAC AGGCTAAAGGGTG TCTCTCGGGGGATGG TERM 939 987409 - 987437 + r 70 -9.7 -2.87564 | gap 1, opp_overlap 987409, overlap 987411 ACTTAGATAAAAAAA CACCCTTT-GCC CAAACA GGCTAAAGGGTG TCTCTCGGGGGATGG Shew_0866 987947 - 987477 - | arginine repressor TERM 940 987963 - 987990 + H 79 -6.6 -4.59853 | gap 1 ATCGAATTATTCTTA TATTCAAAA-AAC TGG GTTATTTTGAATA TTTTTGCGCCATTAG Shew_0867 988255 - 989190 + | malate dehydrogenase TERM 941 989212 - 989251 + T 82 -12.4 -2.77861 | opp_overlap 989224, overlap 989224 989250 GCCTTTAGTTCGTCC TTAATAAAAAAAGGAGCC AATT GGCTCCTTTTTTTATGGG TAACTTTTACCTTGA TERM 942 989224 - 989239 + T 100 -10.4 -5.64274 | opp_overlap 989224, overlap 989212 TCCTTAATAAAAAAA GGAGCC AATT GGCTCC TTTTTTTATGGGTAA TERM 943 989239 - 989224 - T 100 -10.4 -5.7946 | opp_overlap 989224 989212 TCCTTAATAAAAAAA GGAGCC AATT GGCTCC TTTTTTTATGGGTAA Shew_0868 990281 - 989310 - | trans-hexaprenyltranstransferase rplU 990557 - 990868 + | 50S ribosomal protein L21 rpmA 990884 - 991138 + | 50S ribosomal protein L27 TERM 944 991163 - 991189 + F 100 -13.8 -4.06687 | opp_overlap 991167, overlap 991167 ACCCAAGCTAGTTCC TAAAGCCCTGCC TCT GGTGGGGCTTTA TTGTTTATGAAGAAT TERM 945 991167 - 991185 + F 91 -10.2 -4.63048 | opp_overlap 991167, overlap 991163 AAGCTAGTTCCTAAA GCCCTGCC TCT GGTGGGGC TTTATTGTTTATGAA obgE 991355 - 992518 + | GTPase ObgE TERM 946 992933 - 992949 + G 70 -12.3 -2.66873 | overlap 992922 992932 992930 TGATCGGCCTCTCCT GTGGCAG TTT CTGCCAC CTGTTTGGTGGCGAT Shew_0872 992554 - 993315 + | hypothetical protein Shew_0873 993312 - 993782 + | hypothetical protein Shew_0874 993823 - 994305 + | dihydrofolate reductase Shew_0875 994392 - 994784 + | hypothetical protein TERM 947 994834 - 994818 - T 100 -10.1 -5.2189 | opp_overlap 994818 GTAAGCATTAAAAAA CCGGACC TTA AGTCCGG TTTTTTGTACCTGTT TERM 948 994818 - 994834 + T 100 -9.4 -5.30686 | opp_overlap 994818 GTAAGCATTAAAAAA CCGGAC CTTAA GTCCGG TTTTTTGTACCTGTT Shew_0876 996912 - 994888 - | methyl-accepting chemotaxis sensory transducer TERM 949 996968 - 996987 + r 83 -2.7 -5.60993 | overlap 996969 ACATATTCTCAGGGC AGGGCGG TGATAT CCGCTCA TTTTTTTATCGGCCA apaH 997841 - 997017 - | diadenosine tetraphosphatase apaG 998248 - 997868 - | ApaG ksgA 999109 - 998300 - | dimethyladenosine transferase Shew_0880 1000110 - 999112 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 950 1000011 - 1000041 + g 71 -11 -3.08133 | opp_overlap 1000014 GGTCGGCACAAACAA CAAGCTCAGCGGGC CAA GCGCGCTGAGCAAG TTGAATGACTAAGTC TERM 951 1000038 - 1000014 - G 100 -15.7 -4.15703 | opp_overlap 1000011 CGGCACAAACAACAA GCTCAGCGGGC CAA GCGCGCTGAGC AAGTTGAATGACTAA Shew_0881 1001420 - 1000116 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 952 1001446 - 1001471 + r 81 -11.9 -3.00774 | CCTTGGCATATTCAG GTCGGTCGACA CAGG TGTCGACCGAG TATCTAATTCGACTA Shew_0882 1003868 - 1001547 - | organic solvent tolerance protein TERM 953 1003943 - 1003920 - H 78 -11 -3.21924 | overlap 1003918 TTATCGGTGAGAATA GTTGCATCCC CCTT GGGAAGCAAC TTAGCAAAAGAGATA TERM 954 1003985 - 1004003 + H 90 -9 -4.77165 | ATTGCTGTTTCTATT TTGCTTTA TAA TAAAGCAA TTTTCTTCTAAGAGC Shew_0883 1004025 - 1005062 + | aminoglycoside phosphotransferase Shew_0884 1005062 - 1005811 + | nucleotidyl transferase djlA 1005808 - 1006584 + | DNA-J like membrane chaperone protein Shew_0886 1006607 - 1007236 + | hypothetical protein Shew_0887 1007257 - 1008210 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 955 1008275 - 1008244 - f 76 -8 -4.17698 | gap 1, opp_overlap 1008244 1008258 ATCTAGATAGACAAA GGGCGCCTGATTCAT GAG AAGAAG-AGGCGCCC TTTTTGTCATCGCTT TERM 956 1008244 - 1008275 + F 87 -8 -4.92783 | gap 1, opp_overlap 1008244, overlap 1008258 ATCTAGATAGACAAA GGGCGCCTGATTCAT GAG AAGAAG-AGGCGCCC TTTTTGTCATCGCTT TERM 957 1008282 - 1008317 + F 95 -11.9 -4.31379 | overlap 1008258 1008283 GAGGCGCCCTTTTTG TCATCGCTTTGCTGG TTTAAT CCAGCAAGGCGCTGG TTTTAGTGGATTAAT TERM 958 1008283 - 1008316 + F 91 -13.2 -3.18105 | overlap 1008258 1008282 AGGCGCCCTTTTTGT CATCGCTTTGCTGG TTTAAT CCAGCAAGGCGCTG GTTTTAGTGGATTAA TERM 959 1009506 - 1009517 + F 71 -2.2 -5.10767 | overlap 1009495 GGGTGTGCCTATCAT GGTG TGGG TACC TTTTTATCTTGAGTG Shew_0889 1009773 - 1010162 + | hypothetical protein TERM 960 1010254 - 1010242 - g 70 -5.5 -4.43208 | opp_overlap 1010249 ATACCCTTAAACAAA TGGAC AGT GCCCA CGGCGATTCTCGGCG Shew_0890 1010164 - 1011300 + | secretion protein HlyD family protein TERM 961 1011330 - 1011355 + T 86 -9.8 -4.33708 | opp_overlap 1011335, overlap 1011335 ATTATAAATCGTCAT TAAAAGGCCC CATGGT GGGCCTTTTG TTTTACTGGTGCTTT TERM 962 1011350 - 1011335 - T 74 -7.5 -4.27192 | opp_overlap 1011330 1011335 AAATCGTCATTAAAA GGCCC CATGGT GGGCC TTTTGTTTTACTGGT TERM 963 1011335 - 1011350 + T 86 -7.5 -5.14626 | opp_overlap 1011335, overlap 1011330 AAATCGTCATTAAAA GGCCC CATGGT GGGCC TTTTGTTTTACTGGT Shew_0891 1012728 - 1011415 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 964 1012102 - 1012091 - G 74 -7.2 -4.23758 | AGGCCAGACTGAAAA CGCC CCTT GGCG AGATCGGCCCAGAAG TERM 965 1012449 - 1012465 + g 95 -13.7 -4.07885 | AGGTGCCGTGATTGG CCTCGCC CAT GGCGAGG TTTTGCCAGAAGGTG Shew_0892 1013039 - 1014508 + | ATPase central domain-containing protein Shew_0893 1015060 - 1014521 - | hypothetical protein Shew_0894 1015252 - 1015524 + | hypothetical protein Shew_0895 1016886 - 1015603 - | integral membrane sensor signal transduction histidine kinase TERM 966 1016853 - 1016843 - G 70 -5.4 -4.45083 | CCTATACCGAGAAAA CTGA GGC TCAG TAGCAGGTATAGGCT Shew_0896 1017610 - 1016897 - | two component transcriptional regulator Shew_0897 1018011 - 1017610 - | hypothetical protein TERM 967 1017685 - 1017704 + g 73 -5 -4.65722 | gap 1, overlap 1017690 AACTTTTAATTTTAC GCCGGCCAA GGT TTGG-TGGC TTTCTTTGTCTATCA Shew_0898 1018961 - 1018026 - | MltA-interacting MipA family protein Shew_0899 1019917 - 1019081 - | LysR family transcriptional regulator Shew_0900 1020106 - 1021281 + | acyl-CoA dehydrogenase domain-containing protein TERM 968 1021296 - 1021320 + F 74 -9.9 -3.40403 | overlap 1021297 1021307 ATCCTTCTCCTTCAG CTCGGAGCGAC GGC GTCGCTCCGCC TTCTCGTCGCAGCGG TERM 969 1021297 - 1021319 + F 84 -13.4 -2.64099 | overlap 1021296 1021307 TCCTTCTCCTTCAGC TCGGAGCGAC GGC GTCGCTCCGC CTTCTCGTCGCAGCG TERM 970 1021729 - 1021696 - g 71 -12.3 -2.78384 | overlap 1021698 1021700 GCGGCCTTTATGATA GAGAGGGCGCGCCAG GTGC CCGGCGAGACCTCCC TGTGGGACATGCTGC TERM 971 1021727 - 1021698 - g 70 -11.3 -2.94099 | overlap 1021696 1021700 GGCCTTTATGATAGA GAGGGCGCGCCAG GTGC CCGGCGAGACCTC CCTGTGGGACATGCT TERM 972 1022863 - 1022841 - g 81 -13.4 -3.31144 | overlap 1022855 TGCCTATGTCCATAA CGCCGAGGAT CAG ATCCGCGGCG AGGCGGCGACCCTGC TERM 973 1022867 - 1022880 + G 78 -5.9 -4.83169 | opp_overlap 1022855, overlap 1022865 1022875 1022878 AGATCCGCGGCGAGG CGGCG ACCC TGCCG TTTTTCTCCAACGGT Shew_0901 1021390 - 1023681 + | transketolase, central region Shew_0902 1023678 - 1024772 + | (acyl-carrier-protein) S-malonyltransferase TERM 974 1024916 - 1024926 + F 74 -6.8 -4.30995 | GCATATTGATACTGT GGCA TAT TGCC TTCTTTTATAAGGAA Shew_0903 1024955 - 1025476 + | GCN5-related N-acetyltransferase TERM 975 1025586 - 1025617 + F 100 -5.9 -5.626 | opp_overlap 1025576 CAAAACTGATCTAGA TCAGCAGATGG TTAACTAAGC CCCTCTGCTGA TTTTTTTGTGGGCTG Shew_0904 1026007 - 1026573 + | GPR1/FUN34/yaaH family protein Shew_0905 1027754 - 1026570 - | response regulator receiver protein Shew_0906 1028089 - 1027751 - | Hpt protein Shew_0907 1030838 - 1028079 - | PAS/PAC sensor hybrid histidine kinase TERM 976 1028185 - 1028228 + g 71 -8.8 -3.77219 | TAGCAGTCGTCGAGT TCGGTGGCCATGGCGGCC CCTGTGAT GGCCACTATGGGCACAGA TTTACGTTGGGTACT TERM 977 1028972 - 1028949 - G 70 -11 -2.89742 | opp_overlap 1028948 1028947 1028952, overlap 1028939 1028952 GGGAAGCTCTACACA GAACTGGGCC CCCT GGCCAAGTTC GCTTTTAAGGCTAAT TERM 978 1030904 - 1030915 + r 70 -3 -5.00616 | CAATTTAGGGGAGGC GATT TGTG AATC TTTTTTGCGGAAGAG TERM 979 1030974 - 1030939 - R 83 -11.1 -3.57615 | overlap 1030940 GGAAGAGGGGGTAAA GCGTGTCCCTCAAGC AATAGG GCGCGAGGGACACGA TAGGATTAGGTGGTT TERM 980 1030973 - 1030940 - R 89 -14.6 -2.74248 | overlap 1030939 GAAGAGGGGGTAAAG CGTGTCCCTCAAGC AATAGG GCGCGAGGGACACG ATAGGATTAGGTGGT Shew_0908 1031674 - 1031000 - | OmpA/MotB domain-containing protein TERM 981 1031696 - 1031723 + r 70 -7 -4.06864 | gap 1 TCCATTATCAGGTTT GCCTT-AGGGCGG AGA TCGTCCTTAGGGC TTGTTGTTATGTGCG TERM 982 1031735 - 1031749 + r 70 -2.8 -4.9138 | GGGCTTGTTGTTATG TGCG CTATTGT CGCA TTTTGTTTGCATAAT Shew_0909 1032329 - 1031823 - | hypothetical protein Shew_0910 1032482 - 1032799 + | hypothetical protein TERM 983 1033288 - 1033301 + G 72 -5.9 -4.40311 | overlap 1033296 GTGATCATCTTTCTG CTCGC AGGC GCGGG TTTTGCGTTGTTTCT Shew_0911 1033033 - 1033335 + | hypothetical protein Shew_0912 1033341 - 1033589 + | hypothetical protein Shew_0913 1034076 - 1033654 - | glyoxalase/bleomycin resistance protein/dioxygenase Shew_0914 1034821 - 1034216 - | NADPH-dependent FMN reductase Shew_0915 1034962 - 1035618 + | putative transcriptional regulator Shew_0916 1035608 - 1036318 + | pseudouridine synthase TERM 984 1036821 - 1036837 + G 73 -5.1 -4.56597 | ACCCCGAGTATCATG GCCAG CCTTTCC CTGGC TTTTTCCCGCAGCAA Shew_0917 1036479 - 1037444 + | LysR family transcriptional regulator TERM 985 1037445 - 1037481 + F 93 -11.3 -4.24075 | opp_overlap 1037440 1037439 1037453, overlap 1037439 1037438 1037453 CTCGTTAAATGTTAA TTTCAAAATTTGAAA TTTACGC TTTCAAATTTTGAAA TTTCTGTTAATGAAT TERM 986 1037748 - 1037690 - g 100 -17.2 -3.66803 | opp_overlap 1037693 1037697, overlap 1037692 1037735 GGTGAAGATGGTAAA GATGGAGCACCGGGTGAACCTGGTGTTC CTG GTACTCCTGGAACACCCGGTGCACCAGC GGGATCTACCGTTGA TERM 987 1037746 - 1037692 - g 95 -18.4 -3.41302 | opp_overlap 1037693 1037697, overlap 1037690 1037735 TGAAGATGGTAAAGA TGGAGCACCGGGTGAACCTGGTGTTC CTG GTACTCCTGGAACACCCGGTGCACCA GCGGGATCTACCGTT Shew_0918 1037603 - 1039897 + | decaheme cytochrome c TERM 988 1039969 - 1039991 + F 100 -14.2 -5.24129 | opp_overlap 1039966 GATAGCAGTAATCTT GGGGAACCTG ATT TAGGTTCCCC TTTTTTATGCCCAGC TERM 989 1041233 - 1041277 + G 75 -2 -5.07275 | gap 1, overlap 1041240 ATGTGGCGGGCGGCA CCCTGGCGC-TGCCCCTGGTA CAGC TCTTATTGGTATGCGCCGGGG TTTTTATCTATCTGC Shew_0919 1040176 - 1042299 + | diguanylate phosphodiesterase TERM 990 1042391 - 1042415 + T 78 -8.5 -4.15044 | opp_overlap 1042395, overlap 1042393 1042395 CCGAGCAGCCAATAA AAAAGGGAGCC CTA GGCTCCCTCTC TTTATTAGGCGCGGG TERM 991 1042393 - 1042413 + T 83 -11.1 -3.6761 | opp_overlap 1042395, overlap 1042391 1042395 GAGCAGCCAATAAAA AAGGGAGCC CTA GGCTCCCTC TCTTTATTAGGCGCG TERM 992 1042411 - 1042395 - T 100 -13.7 -5.4833 | opp_overlap 1042393 1042391 1042395 GCAGCCAATAAAAAA GGGAGCC CTA GGCTCCC TCTCTTTATTAGGCG TERM 993 1042395 - 1042411 + T 100 -13.7 -3.41738 | opp_overlap 1042395, overlap 1042393 1042391 GCAGCCAATAAAAAA GGGAGCC CTA GGCTCCC TCTCTTTATTAGGCG Shew_0920 1043958 - 1042420 - | major facilitator transporter TERM 994 1044162 - 1044143 - R 100 -10.7 -5.82316 | AGCAGGTAAAAAAAA GGCGAGC ACTCCG GCTCGCC AAAAAGGGTGTGACA Shew_0921 1047228 - 1044259 - | hypothetical protein TERM 995 1047309 - 1047299 - H 73 -2.6 -5.13016 | AATGAAAATGAAAAA TTAT TCA ATAA AAACAATGGCTAAGT Shew_0922 1047740 - 1049458 + | methyl-accepting chemotaxis sensory transducer TERM 996 1049534 - 1049551 + T 100 -11.3 -4.84527 | opp_overlap 1049534 GCGGGTAAGAAAAAA GGCAGTC AACT GACTGCC TTTTTAGTATCTCAA TERM 997 1049551 - 1049534 - T 100 -11.3 -5.4505 | opp_overlap 1049534 GCGGGTAAGAAAAAA GGCAGTC AACT GACTGCC TTTTTAGTATCTCAA valS 1052452 - 1049573 - | valyl-tRNA synthetase Shew_0924 1052938 - 1052477 - | DNA polymerase III chi subunit, HolC TERM 998 1053598 - 1053567 - R 100 -15.2 -4.00934 | opp_overlap 1053565 ACCTTAAACACTAAA CGCAACGCATAGCA AAAA TGCCAAGCGTTGCG AATCACTTTTAAATA Shew_0925 1055085 - 1053619 - | hypothetical protein TERM 999 1054673 - 1054663 - G 73 -5.4 -4.57837 | ACATGGTGGTAAAAA CTTG AGC CAAG ACTCTTTTGCTGGCA TERM 1000 1054802 - 1054821 + g 72 -2.2 -4.93318 | gap 1, opp_overlap 1054783 GAGATCCCTGTAATA GAGAGATCT GAT AG-TTTCTC TTTTTCTGAATTCTC Shew_0926 1055828 - 1055175 - | hypothetical protein TERM 1001 1057034 - 1057050 + H 70 -9.5 -2.84878 | opp_overlap 1057034, overlap 1057033 GGCGTTAGGTAACAA TGAAGGT ACG ACCTTCA GTTTCACTTAGCCAA TERM 1002 1057050 - 1057034 - H 77 -9.5 -3.67597 | opp_overlap 1057034 1057033 GGCGTTAGGTAACAA TGAAGGT ACG ACCTTCA GTTTCACTTAGCCAA Shew_0927 1057371 - 1059119 + | amidohydrolase 3 TERM 1003 1059228 - 1059256 + F 76 -11.1 -3.08133 | opp_overlap 1059227 1059224 GGCCTTCGAAAGCAG GGCCGAAAATGTT CCC GACATTTTCGGCA TTCCCTCCATCCGTG Shew_0928 1059390 - 1060403 + | transposase IS116/IS110/IS902 family protein TERM 1004 1060930 - 1060949 + T 75 -9.3 -3.66874 | opp_overlap 1060930 TTGCGGCAAAAAAAA TCCCCCA GGGTGG TGGGGGA TTTGGGTGCCATTGA TERM 1005 1060949 - 1060930 - T 100 -9.3 -5.75342 | opp_overlap 1060930 TTGCGGCAAAAAAAA TCCCCCA GGGTGG TGGGGGA TTTGGGTGCCATTGA Shew_0929 1064111 - 1061034 - | Ig family protein Shew_0930 1065080 - 1064505 - | AMMECR1 domain-containing protein TERM 1006 1064828 - 1064838 + g 73 -8.2 -4.07568 | GATCCTTAAAGGCGG CGCC ATA GGCG TTTTCGCAGGCGCAC Shew_0931 1065858 - 1065058 - | hypothetical protein Shew_0932 1065921 - 1067009 + | radical SAM domain-containing protein Shew_0933 1067720 - 1067049 - | methyltransferase type 11 Shew_0934 1068750 - 1067836 - | TPR repeat-containing protein TERM 1007 1068342 - 1068356 + g 74 -11.4 -3.26933 | overlap 1068340 1068345 ATTGCAGCTGCTCGG CCGCCA ACT TGGCGG TGTTGGTCTTGATCT TERM 1008 1069092 - 1069070 - R 100 -7.6 -5.48825 | opp_overlap 1069070 GATGAGCTAAAAAAA CCGGCAAACG TCC CTGTTGCCGG TGGTTGGTTAAACGA Shew_0935 1072729 - 1069130 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 1009 1072782 - 1072755 - R 80 -10.6 -3.31248 | opp_overlap 1072755, overlap 1072756 TAATAGTGGCGAGAA GCGGGATAGCCA ACAT TGGCTATCCCAA TCATGTGAAGACTCA TERM 1010 1072781 - 1072756 - R 87 -14.1 -2.58427 | opp_overlap 1072755, overlap 1072755 AATAGTGGCGAGAAG CGGGATAGCCA ACAT TGGCTATCCCA ATCATGTGAAGACTC Shew_0936 1076561 - 1072806 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 1011 1076678 - 1076692 + r 100 -6.4 -5.51046 | TTATTCGCCGTTTTT TGCTCT ATG AGGGCA TTTTTTATCTCTTTA Shew_0937 1078833 - 1076743 - | transcriptional regulator, CadC Shew_0938 1079082 - 1079471 + | TonB-dependent receptor TERM 1012 1079561 - 1079542 - T 100 -12.2 -5.63504 | opp_overlap 1079542 AATCCCATAAAAAAA GGTGAAGC AATT GCTTCACC TTTTTTGTGTTAAAC TERM 1013 1079542 - 1079561 + T 100 -12.2 -5.47159 | opp_overlap 1079542 AATCCCATAAAAAAA GGTGAAGC AATT GCTTCACC TTTTTTGTGTTAAAC Shew_0939 1081116 - 1079608 - | leucyl aminopeptidase TERM 1014 1080449 - 1080469 + g 72 -6.2 -4.37527 | gap 1 GCCATCTGCTCTTCG CCT-ACCGT GGTG ACGGTGAGG TTTTCATGGTTCTCG TERM 1015 1081281 - 1081269 - H 73 -6.3 -4.43571 | overlap 1081260 ACAAAACTACCAAAA GTAGA CAG TCTAC ATGAAAAGTGGGCTG TERM 1016 1081401 - 1081425 + G 74 -4.3 -4.76075 | overlap 1081386 1081381 1081420 CAGTGCTTTTAGTAC TGTTAGCTATT TTT ATTAGCCAACA TTTTGTTCGTGTACT Shew_0940 1081337 - 1082449 + | permease YjgP/YjgQ family protein Shew_0941 1082446 - 1083504 + | permease YjgP/YjgQ family protein TERM 1017 1083532 - 1083560 + T 100 -13.3 -3.57797 | opp_overlap 1083539, overlap 1083539 AAAGATGAGCTCATT AAAAAAAGGACCC CTA GGGTCCTTTTTTC TTGTCTGAGTTTAGC TERM 1018 1083539 - 1083553 + T 100 -11.4 -5.60689 | opp_overlap 1083539, overlap 1083532 AGCTCATTAAAAAAA GGACCC CTA GGGTCC TTTTTTCTTGTCTGA TERM 1019 1083553 - 1083539 - T 100 -11.4 -5.52986 | opp_overlap 1083539 1083532 AGCTCATTAAAAAAA GGACCC CTA GGGTCC TTTTTTCTTGTCTGA Shew_0942 1084085 - 1083576 - | RDD domain-containing protein TERM 1020 1083982 - 1083964 - G 77 -12.4 -3.24411 | overlap 1083962 1083960 AGGGCGGTAAAGATA CCGAAGCC TAT GGCTCCGG CCACCATGTAGACGG Shew_0943 1084407 - 1084147 - | hypothetical protein Shew_0944 1084976 - 1084464 - | GCN5-related N-acetyltransferase Shew_0945 1085349 - 1085984 + | hypothetical protein TERM 1021 1086003 - 1085980 - f 77 -9 -3.85362 | gap 1, overlap 1085984 AATTTAACGATGAAA TTTA-GGCAGC CTT GCTGCCGTAAA ACCTGCTTATAACAA TERM 1022 1085998 - 1085984 - f 77 -11.4 -2.69489 | overlap 1085980 TAACGATGAAATTTA GGCAGC CTT GCTGCC GTAAAACCTGCTTAT Shew_0946 1086039 - 1087826 + | band 7 protein TERM 1023 1087886 - 1087906 + T 100 -16.9 -5.33026 | opp_overlap 1087886 TAATAGAAGAAAAAA GGCTAGCGC ATT GCGCTAGCC TTTTTGTTTGCCTTG TERM 1024 1087906 - 1087886 - T 100 -16.9 -5.64304 | opp_overlap 1087886 TAATAGAAGAAAAAA GGCTAGCGC ATT GCGCTAGCC TTTTTGTTTGCCTTG Shew_0947 1089449 - 1087950 - | carboxypeptidase Taq TERM 1025 1088598 - 1088650 + g 80 -15 -2.62184 | opp_overlap 1088587 AACAGGTTGGCCACG CCAGTCGATG-GGTAGGCCCTGCTCG TAG CGGGCATGGCCTACCTCGTGGA-TGG TGCTATAGAGGGAGG Shew_0948 1090220 - 1089588 - | hypothetical protein TERM 1026 1090329 - 1090306 - R 93 -10.3 -5.02323 | gap 1, opp_overlap 1090306 1090313 GCAGGATAAAGAAAA CCGCCGCAGC TTGTG GCTGCG-CGG CGGTCTGTCTAGCTG Shew_0949 1091126 - 1090458 - | redoxin domain-containing protein TERM 1027 1091225 - 1091240 + r 80 -9 -4.09321 | opp_overlap 1091225 GATGCGAACAAAAAA GGCACT GTTA AGTGCC TTATTTGATTAGATA TERM 1028 1091240 - 1091225 - R 100 -9 -5.46657 | opp_overlap 1091225 GATGCGAACAAAAAA GGCACT GTTA AGTGCC TTATTTGATTAGATA Shew_0950 1092577 - 1091279 - | DEAD/DEAH box helicase domain-containing protein TERM 1029 1092922 - 1092959 + G 72 -4.1 -4.77438 | gap 1, overlap 1092923 1092928 ATGTCTTGATCGTCG ATGATTCGCTGAGCGCCT GTC GGGTGCTCAGCC-GTCAC TTTTTGCTGCTGGAT Shew_0951 1092897 - 1094096 + | response regulator receiver modulated diguanylate phosphodiesterase TERM 1030 1094121 - 1094104 - T 100 -11.3 -5.06816 | opp_overlap 1094104 AGGCCTGAACAAAAA CAGCACC TTAG GGTGCTG TTTTTTATGGGGTAA TERM 1031 1094104 - 1094121 + T 100 -11.3 -5.26316 | opp_overlap 1094104 AGGCCTGAACAAAAA CAGCACC TTAG GGTGCTG TTTTTTATGGGGTAA Shew_0952 1095983 - 1094196 - | peptidase M24 Shew_0953 1096450 - 1097688 + | major facilitator transporter TERM 1032 1097941 - 1097929 - g 86 -9.1 -4.70583 | CCGAGCAATATAAAA TCGCC ACC GGCGA GCACTTCACCCTGGC Shew_0954 1097847 - 1098626 + | ROK family protein Shew_0955 1098944 - 1100182 + | peptidase M24 TERM 1033 1100376 - 1100347 - T 86 -13.7 -2.79183 | opp_overlap 1100354, overlap 1100354 GTGATTGGTATGATA CAAAAAACGCGCC TTAG GGCGCGTTTTTCA TGTCGTAAGTCACTG TERM 1034 1100354 - 1100369 + T 100 -11.8 -4.82667 | opp_overlap 1100347 1100354 GTATGATACAAAAAA CGCGCC TTAG GGCGCG TTTTTCATGTCGTAA TERM 1035 1100369 - 1100354 - T 100 -11.8 -5.39721 | opp_overlap 1100354, overlap 1100347 GTATGATACAAAAAA CGCGCC TTAG GGCGCG TTTTTCATGTCGTAA Shew_0956 1100868 - 1100395 - | peptidylprolyl isomerase, FKBP-type Shew_0957 1101491 - 1100955 - | hypothetical protein Shew_0958 1102990 - 1101533 - | hypothetical protein TERM 1036 1102538 - 1102569 + g 81 -8.8 -4.4891 | gap 1, overlap 1102538 1102539 AATTTCATAGCCCTT G-CTGTCATAGGCGG CTG CTGTCTGTGACAGGC TTTTATCATGCTCAC TERM 1037 1102539 - 1102567 + g 73 -12.5 -2.56836 | overlap 1102538 1102538 ATTTCATAGCCCTTG CTGTCATAGGCGG CTG CTGTCTGTGACAG GCTTTTATCATGCTC Shew_0959 1103614 - 1103138 - | hypothetical protein TERM 1038 1103567 - 1103546 - G 72 -2.1 -4.88736 | opp_overlap 1103549 1103550, overlap 1103550 CATGAGGGAGAAAAA CTTATGGCC CAGT GGCCACTTG GTTAGGCGGTGGTAG Shew_0960 1103827 - 1104777 + | hypothetical protein TERM 1039 1104816 - 1104834 + T 76 -11 -3.01924 | GTGGATACTGCTGGT GGCGCTTG GTT TAAGCGCC TGTTCGACAGGGATA TERM 1040 1105006 - 1105033 + T 73 -9.2 -3.53444 | overlap 1104994 1105012 1105029 GCGGCCTCTGCTTAG GCTAGGTCTAGC ATAG GCTAGGTTTAGC TTTGGGCGGGCCTAG TERM 1041 1105029 - 1105063 + T 71 -9.2 -3.33009 | overlap 1105006 1105058 TAGCATAGGCTAGGT TTAGCTTTGGGCGGGC CTA GCCTGCCTGACGCGAA TTATCGACGGTTTTC Shew_0961 1105389 - 1105045 - | hypothetical protein Shew_0962 1105515 - 1105685 + | hypothetical protein TERM 1042 1105767 - 1105752 - T 95 -7.5 -5.45652 | opp_overlap 1105742 1105752 ACCCCTAATAAAAAA CCGCC GATGAA GGCGG TTTTTTACAATCACT TERM 1043 1105752 - 1105767 + T 86 -7.5 -5.05782 | opp_overlap 1105752, overlap 1105742 ACCCCTAATAAAAAA CCGCC GATGAA GGCGG TTTTTTACAATCACT Shew_0963 1106522 - 1105803 - | hypothetical protein TERM 1044 1106609 - 1106596 - R 70 -6.7 -4.02051 | GATTAAGCCAAACAA CAGCT AGTT AGCTG AGACTACATGGCAAT Shew_0964 1106998 - 1106633 - | protein of unknown function DUF861, cupin_3 TERM 1045 1107017 - 1107052 + r 77 -6.9 -4.51743 | opp_overlap 1107022 1107027, overlap 1107018 1107021 1107022 1107044 TGCTCCAATTTACAG ATAGACTTAAGGCGC AGCGAG GCGCCTTAAGCTTAG TTTATTTCATGGTCG TERM 1046 1107018 - 1107051 + r 76 -10.4 -3.30323 | opp_overlap 1107022 1107027, overlap 1107017 1107021 1107022 1107044 GCTCCAATTTACAGA TAGACTTAAGGCGC AGCGAG GCGCCTTAAGCTTA GTTTATTTCATGGTC TERM 1047 1107021 - 1107048 + r 79 -9.9 -3.77491 | opp_overlap 1107022 1107027, overlap 1107018 1107017 1107022 1107044 CCAATTTACAGATAG ACTTAAGGCGC AGCGAG GCGCCTTAAGC TTAGTTTATTTCATG TERM 1048 1107047 - 1107022 - R 86 -13.4 -3.06708 | opp_overlap 1107021 1107018 1107017 1107022 1107044, overlap 1107027 CAATTTACAGATAGA CTTAAGGCGC AGCGAG GCGCCTTAAG CTTAGTTTATTTCAT TERM 1049 1107022 - 1107047 + r 86 -13.4 -2.8541 | opp_overlap 1107022 1107027, overlap 1107021 1107018 1107017 1107044 CAATTTACAGATAGA CTTAAGGCGC AGCGAG GCGCCTTAAG CTTAGTTTATTTCAT Shew_0965 1108544 - 1107054 - | methylmalonate-semialdehyde dehydrogenase TERM 1050 1107220 - 1107205 - G 71 -7.6 -4.09685 | TTCCAGCCGCCAAAA CTATGG AAGG CCATAG GGACTGGGATAGGTA Shew_0966 1109935 - 1108595 - | beta alanine--pyruvate transaminase TERM 1051 1109767 - 1109795 + g 83 -12.4 -3.72984 | opp_overlap 1109759 1109764 1109766 TACAGCACCAGAGAC CGGCTGTGCCGT CGAGT ACGGGACGGCCG TTTACATCCTTGTAG Shew_0967 1110182 - 1111678 + | aldehyde dehydrogenase TERM 1052 1111767 - 1111748 - f 75 -10.8 -2.90571 | opp_overlap 1111748 AACGCTTTAATCACA GCCCTTTA GCAA TAAAGGGC TTTTTTTATGCCAGT TERM 1053 1111748 - 1111767 + F 100 -10.8 -5.61596 | opp_overlap 1111748 AACGCTTTAATCACA GCCCTTTA GCAA TAAAGGGC TTTTTTTATGCCAGT Shew_0968 1111913 - 1112767 + | 3-mercaptopyruvate sulfurtransferase TERM 1054 1112804 - 1112780 - T 81 -11.5 -3.1372 | opp_overlap 1112785, overlap 1112785 TAGTCGTTACTAACA GAAAAGGTGCC TAG GGCACCTTTTT TTATGCTGACTATTT TERM 1055 1112785 - 1112799 + T 100 -11.4 -5.67063 | opp_overlap 1112780 1112785 GTTACTAACAGAAAA GGTGCC TAG GGCACC TTTTTTTATGCTGAC TERM 1056 1112799 - 1112785 - T 100 -11.4 -4.70583 | opp_overlap 1112785, overlap 1112780 GTTACTAACAGAAAA GGTGCC TAG GGCACC TTTTTTTATGCTGAC Shew_0969 1114135 - 1112831 - | FAD dependent oxidoreductase Shew_0970 1114319 - 1114867 + | XRE family transcriptional regulator Shew_0971 1115311 - 1116072 + | peptidase C26 Shew_0972 1116079 - 1117428 + | glutamate--ammonia ligase Shew_0973 1117707 - 1118807 + | extracellular solute-binding protein TERM 1057 1118818 - 1118842 + F 70 -6.4 -4.22375 | gap 1, overlap 1118819 1118821 TGTAATGCCTACACC CGG-GGGCAAG TTCG CTTGCCCTCCA TTTCTTAGATCATCT TERM 1058 1118819 - 1118841 + F 71 -9.9 -3.12702 | gap 1, overlap 1118818 1118821 GTAATGCCTACACCC GG-GGGCAAG TTCG CTTGCCCTCC ATTTCTTAGATCATC TERM 1059 1118821 - 1118838 + F 77 -11.3 -2.76539 | overlap 1118819 1118818 AATGCCTACACCCGG GGGCAAG TTCG CTTGCCC TCCATTTCTTAGATC Shew_0974 1118906 - 1120042 + | spermidine/putrescine ABC transporter ATPase subunit Shew_0975 1120053 - 1120958 + | binding-protein-dependent transport systems inner membrane component Shew_0976 1120955 - 1121782 + | binding-protein-dependent transport systems inner membrane component TERM 1060 1121828 - 1121804 - f 93 -15.7 -3.05963 | opp_overlap 1121794 1121809, overlap 1121807 AGCGTTAGCTCAAGA CGACAGGCGGC CGC GCCGCCTGTCT ACCCAAGCCATTATT TERM 1061 1121825 - 1121807 - f 100 -16 -2.75074 | opp_overlap 1121794 1121809, overlap 1121804 GTTAGCTCAAGACGA CAGGCGGC CGC GCCGCCTG TCTACCCAAGCCATT TERM 1062 1121809 - 1121823 + F 82 -12.8 -2.87132 | opp_overlap 1121807 1121804, overlap 1121794 TAGCTCAAGACGACA GGCGGC CGC GCCGCC TGTCTACCCAAGCCA Shew_0977 1121866 - 1123152 + | FAD dependent oxidoreductase TERM 1063 1123168 - 1123198 + T 95 -14.9 -3.24597 | opp_overlap 1123175, overlap 1123175 CCAGGTTATTGCCAT TAAAAAAGCCCGC TCGAT GCGGGCTTTTTTG TATTGATTAAGGCTT TERM 1064 1123175 - 1123191 + T 100 -10.8 -5.50925 | opp_overlap 1123175, overlap 1123168 ATTGCCATTAAAAAA GCCCGC TCGAT GCGGGC TTTTTTGTATTGATT TERM 1065 1123191 - 1123175 - T 100 -10.8 -5.14965 | opp_overlap 1123175 1123168 ATTGCCATTAAAAAA GCCCGC TCGAT GCGGGC TTTTTTGTATTGATT Shew_0978 1124187 - 1123249 - | band 7 protein Shew_0979 1126770 - 1124320 - | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1066 1124950 - 1124920 - G 71 -6.7 -4.20918 | opp_overlap 1124917 1124920, overlap 1124921 TGCAAGGGGAATAAA GTCCAGCGGCGAG ATCAG CTTGCCGCTGGGG TCGTATAATCGGGCC Shew_0980 1127012 - 1130527 + | multi-sensor hybrid histidine kinase Shew_0981 1130561 - 1131028 + | response regulator receiver protein TERM 1067 1131114 - 1131098 - f 100 -12.3 -5.64873 | opp_overlap 1131098 CCGAATAACAAAAAA GCCTGCA AGA TGCAGGC TTTTTTGTTTGAATT TERM 1068 1131098 - 1131114 + F 100 -12.3 -5.67283 | opp_overlap 1131098 CCGAATAACAAAAAA GCCTGCA AGA TGCAGGC TTTTTTGTTTGAATT Shew_0982 1131481 - 1133007 + | hypothetical protein Shew_0983 1133264 - 1134601 + | amidohydrolase TERM 1069 1135834 - 1135852 + G 76 -5.2 -4.82901 | GTTATCAATGGGACA TCGTCTTC CCC GACGGCGA TTTTTATAAAGGCGG Shew_0984 1134636 - 1135988 + | beta-lactamase TERM 1070 1137377 - 1137362 - g 88 -7.6 -5.06451 | TATGATTTGAAAAAA GTGAGA ATAG TCTCAC CATACCTGTTTCTTC Shew_0985 1136261 - 1138042 + | phospholipase D/transphosphatidylase TERM 1071 1138255 - 1138215 - f 100 -13 -3.73068 | gap 2, opp_overlap 1138228, overlap 1138217 1138219 1138228 GCGTTAACTGAACAA CAGATACAAAAAAGCCTGCA AGA TGCAGGCTTTTTTGT-T-TG AATTGGTGGCCCCTC TERM 1072 1138255 - 1138217 - f 100 -14.8 -3.44686 | opp_overlap 1138228, overlap 1138215 1138219 1138228 GTTAACTGAACAACA GATACAAAAAAGCCTGCA AGA TGCAGGCTTTTTTGTTTG AATTGGTGGCCCCTC TERM 1073 1138253 - 1138219 - f 100 -17.4 -3.28973 | opp_overlap 1138228, overlap 1138215 1138217 1138228 TAACTGAACAACAGA TACAAAAAAGCCTGCA AGA TGCAGGCTTTTTTGTT TGAATTGGTGGCCCC TERM 1074 1138244 - 1138228 - f 100 -12.3 -5.46276 | opp_overlap 1138228, overlap 1138219 1138215 1138217 AACAGATACAAAAAA GCCTGCA AGA TGCAGGC TTTTTTGTTTGAATT TERM 1075 1138228 - 1138244 + F 100 -12.3 -5.67283 | opp_overlap 1138228 1138219 1138215 1138217 AACAGATACAAAAAA GCCTGCA AGA TGCAGGC TTTTTTGTTTGAATT TERM 1076 1138389 - 1138373 - f 100 -13.7 -5.40072 | opp_overlap 1138369 TCTTTTCTAAAAAAA CCTGCCG GAA CGGCAGG TAAATCCCTTGTATT TERM 1077 1138407 - 1138436 + F 82 -9.3 -4.23758 | AATCCCTTGTATTTA CTGCCTCCGGAAC AACG GTTTTGGAAGCAG TTTTACGTCTGAAAT TERM 1078 1138630 - 1138652 + F 91 -11.2 -3.93695 | opp_overlap 1138626 1138625 GAACGCGAAAGCAAG CCTGTGGCCG AGT CGGCGGCAGG TTTGTACGTCCTCCC Shew_0986 1139244 - 1139588 + | hypothetical protein TERM 1079 1140253 - 1140232 - g 78 -13 -3.35438 | opp_overlap 1140231 1140230, overlap 1140245 GACGATAGTCGAGAA GGAGGCCC TTAAAC GGGCCTCC CATTTCGTCTGCGTA Shew_0987 1140182 - 1141375 + | hypothetical protein TERM 1080 1141442 - 1141461 + T 71 -9.4 -3.01791 | opp_overlap 1141428 1141446, overlap 1141446 AGATGACTGGAGCCA CCAAGTTT GGGA AAACTTGG TATTCAGCGGAGCGT Shew_0988 1144076 - 1141764 - | hypothetical protein TERM 1081 1142400 - 1142358 - G 70 -12 -2.62024 | overlap 1142355 1142354 GAGCATTACAAGCCA GCCAGCTACACCCATGATCC AGA GAATCATAGGGGTGGCTGGT AGATAAAATGCCAGC TERM 1082 1144628 - 1144638 + H 74 -5.4 -4.63218 | opp_overlap 1144628, overlap 1144636 ATGAAGAGCGCAATA CGAA AAC TTCG TTTTCTTGCGGCAGG TERM 1083 1144675 - 1144688 + H 82 -8.1 -4.57073 | opp_overlap 1144675, overlap 1144636 CCCTGCACCCCAAAA TCGGC TTAT GCCGA TTTTTAAAAACCATG TERM 1084 1144688 - 1144675 - H 74 -8.1 -4.13767 | opp_overlap 1144636 1144675 CCCTGCACCCCAAAA TCGGC TTAT GCCGA TTTTTAAAAACCATG TERM 1085 1144982 - 1144964 - g 86 -7.4 -4.90917 | overlap 1144965 AAATCCAAGGAAAAA TTCTCGTG TTG CACGAGAG ACCATTGTCGCCCTT TERM 1086 1144981 - 1144965 - g 72 -10.9 -3.52923 | overlap 1144964 AATCCAAGGAAAAAT TCTCGTG TTG CACGAGA GACCATTGTCGCCCT TERM 1087 1145598 - 1145551 - g 75 -2.4 -5.07567 | gap 1, opp_overlap 1145557, overlap 1145552 CGACACCTCAAAAAA CCGCGACCGCCTACGGTG-GTCT TGC AGCCTCTCAGGAGGCGGCTGAGG AAGCTCTGAAGCAGG TERM 1088 1146134 - 1146110 - g 80 -5.6 -4.89393 | overlap 1146111 CAAATTCGAGAAAAA TTCCGGCACG GCCAG CACGCCGGAT AACTCCAACTCTAGC Shew_0989 1144881 - 1146173 + | MobA/MobL protein Shew_0990 1146194 - 1146673 + | hypothetical protein TERM 1089 1146902 - 1146933 + T 100 -12.4 -3.81027 | opp_overlap 1146911, overlap 1146911 ATCTAAAATGTTTGA TGACTGAAACCGCA CCAG TGCGGTTTTCGTCA TTTAAATTCATTGAG TERM 1090 1146911 - 1146924 + T 79 -8.1 -4.39386 | opp_overlap 1146911, overlap 1146902 GTTTGATGACTGAAA CCGCA CCAG TGCGG TTTTCGTCATTTAAA Shew_0991 1147743 - 1147126 - | resolvase domain-containing protein Shew_0992 1148849 - 1147752 - | BsuBIPstI restriction endonuclease domain-containing protein TERM 1091 1147860 - 1147842 - G 70 -11 -2.9062 | overlap 1147839 CTCAGTAGAGAACCA GGCATAGG AGC CCCATGCC AGCTCAGAGATAGAT Shew_0993 1150633 - 1148846 - | Eco57I restriction endonuclease TERM 1092 1149937 - 1149921 - G 79 -8.7 -4.30416 | opp_overlap 1149920 ATTACCAAGTCAAAA GTGCCCA TAT TGGACAC GTTAAGTGCATCTCC Shew_0994 1150865 - 1151482 + | KfrAs Shew_0995 1151992 - 1152966 + | phage integrase family protein TERM 1093 1153443 - 1153426 - T 100 -8.4 -5.86976 | opp_overlap 1153421 1153426 GCATAAAATAAAAAA GCCAGC ACTGTG GCTGGC TTTTCTGCTCTGTTT TERM 1094 1153426 - 1153443 + T 87 -8.4 -4.55673 | opp_overlap 1153426, overlap 1153421 GCATAAAATAAAAAA GCCAGC ACTGTG GCTGGC TTTTCTGCTCTGTTT Shew_0996 1155327 - 1153477 - | RpoD family RNA polymerase sigma factor Shew_0997 1157249 - 1155444 - | DNA primase TERM 1095 1157248 - 1157225 - G 95 -11 -4.61852 | opp_overlap 1157225 1157228, overlap 1157228 AAGAGTAGAAACAAA CAAGCCGTGC GTAG GCACGGCTCA TTCATACATTGAACT TERM 1096 1157245 - 1157228 - G 95 -12.7 -4.39652 | opp_overlap 1157225 1157228, overlap 1157225 AGTAGAAACAAACAA GCCGTGC GTAG GCACGGC TCATTCATACATTGA TERM 1097 1157228 - 1157245 + g 74 -12.7 -2.8007 | opp_overlap 1157228 1157225, overlap 1157225 AGTAGAAACAAACAA GCCGTGC GTAG GCACGGC TCATTCATACATTGA Shew_0998 1157712 - 1157269 - | GatB/Yqey domain-containing protein TERM 1098 1157493 - 1157535 + g 71 -8.5 -3.95674 | CTGCTTGGGCTAGTT CGTCACGAC-CTGCCGCTTCA TAT TGA-GCGATAGAGTCGCGACG TTGTTTAACCATTTT TERM 1099 1157733 - 1157743 + r 74 -8.2 -4.07568 | opp_overlap 1157729 1157730 1157733, overlap 1157732 ATTAGTATAAACGTA CGCG ACG CGCG TTTTCGCGAGAAAGC rpsU 1157934 - 1157719 - | 30S ribosomal protein S21 Shew_1000 1158281 - 1159294 + | metalloendopeptidase glycoprotease family TERM 1100 1159324 - 1159341 + T 100 -11.3 -5.5762 | opp_overlap 1159324 ATCGTTGCGACAAAA GCCCTTC CTAC GAAGGGC TTTTTTGTATTTGGT TERM 1101 1159341 - 1159324 - T 93 -11.3 -4.37092 | opp_overlap 1159324 ATCGTTGCGACAAAA GCCCTTC CTAC GAAGGGC TTTTTTGTATTTGGT Shew_1001 1160070 - 1159459 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 1102 1159730 - 1159703 - G 75 -12.8 -3.052 | gap 1 AGTGCCAGAGACAGA TCGGCACCTATGG GCG CCAT-GGCGCCGA AGGCGGTCGCAACGC TERM 1103 1159836 - 1159795 - G 81 -15.1 -2.88249 | gap 1 GATATGCCCCAGACA GGCGGCGATGGCGATCACCC CGA GGGAGA-CGGCATCGACGCC GAGACGGAAAGCGAC Shew_1002 1160367 - 1160720 + | dihydroneopterin aldolase Shew_1003 1160725 - 1161216 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Shew_1004 1161251 - 1162051 + | undecaprenyl pyrophosphate phosphatase Shew_1005 1162084 - 1162908 + | rRNA (guanine-N(1)-)-methyltransferase Shew_1006 1163002 - 1163943 + | ErfK/YbiS/YcfS/YnhG family protein TERM 1104 1163981 - 1163997 + T 100 -11.5 -5.24531 | opp_overlap 1163981, overlap 1163993 GGTGAGTATATCTAA GGCGTCC ATT GGGCGCC TTTTTTGTGGGCGCT TERM 1105 1163997 - 1163981 - T 70 -9.3 -3.14468 | opp_overlap 1163981 1163993 GGTGAGTATATCTAA GGCGTCC ATT GGGCGCC TTTTTTGTGGGCGCT TERM 1106 1163993 - 1164011 + T 77 -5.2 -5.00884 | opp_overlap 1163981, overlap 1163981 TAAGGCGTCCATTGG GCGCCT TTTTTGT GGGCGC TTTTTTAGCGGAGGT TERM 1107 1164234 - 1164203 - T 100 -14.6 -4.08216 | overlap 1164205 GCAGTGGGGGGAAAA CATATCGGCAACAC AGAA GTGTTGCCGATACA GACAAATTACTTCTT TERM 1108 1164232 - 1164205 - T 100 -17.2 -3.63922 | overlap 1164203 AGTGGGGGGAAAACA TATCGGCAACAC AGAA GTGTTGCCGATA CAGACAAATTACTTC Shew_1007 1164507 - 1164241 - | major outer membrane lipoprotein, putative Shew_1008 1165958 - 1164717 - | metal dependent phosphohydrolase Shew_1009 1166146 - 1167909 + | peptidoglycan binding domain-containing protein Shew_1010 1167909 - 1169036 + | general secretion pathway protein B TERM 1109 1169100 - 1169120 + T 100 -14.1 -5.00138 | opp_overlap 1169100 ATTAGTAAGAAAAAA GGCGATGAA TCA TTCATCGCC TTTTTCGTTTGAGTC TERM 1110 1169120 - 1169100 - T 100 -14.1 -5.52023 | opp_overlap 1169100 ATTAGTAAGAAAAAA GGCGATGAA TCA TTCATCGCC TTTTTCGTTTGAGTC Shew_1011 1170430 - 1169183 - | citrate transporter TERM 1111 1170985 - 1171012 + r 80 -7 -4.87893 | opp_overlap 1170991, overlap 1170991 GTAAAGCCGGGCAAT AAAAAAGGACGC CTGG GCGTCCTTTCTG TTTTTCGTTACGATT TERM 1112 1171006 - 1170991 - R 100 -10.4 -5.4505 | opp_overlap 1170991 1170985 CCGGGCAATAAAAAA GGACGC CTGG GCGTCC TTTCTGTTTTTCGTT TERM 1113 1170991 - 1171006 + r 91 -10.4 -4.59653 | opp_overlap 1170991, overlap 1170985 CCGGGCAATAAAAAA GGACGC CTGG GCGTCC TTTCTGTTTTTCGTT Shew_1012 1172341 - 1171055 - | glutamate-1-semialdehyde-2,1-aminomutase TERM 1114 1171085 - 1171098 + g 77 -8.1 -4.21319 | opp_overlap 1171078 GGCGAAGACGCGATC CGCTG CGGC CAGCG TTTCTTCCAGTTCCT TERM 1115 1171849 - 1171830 - G 77 -8.6 -4.25104 | gap 1, opp_overlap 1171830, overlap 1171831 GTGTGCTTAGCAAAA TCTTCCGGG ATA CCCGG-AGA GCTTGGCTGACCTAG TERM 1116 1172363 - 1172380 + r 75 -4.9 -4.87665 | gap 1 TCCTTTAAAGTCGTC GCCAGATT AAA AATC-GGC TTTTTGTGAATACCA Shew_1013 1173388 - 1172369 - | aspartate carbamoyltransferase TERM 1117 1173695 - 1173707 + H 77 -10.5 -3.47975 | opp_overlap 1173686 1173685, overlap 1173693 CTAAAGGCGAGTCAC GCGCG TGT CGCGC TATTCTCTTGTCTGA Shew_1014 1173869 - 1174375 + | XRE family transcriptional regulator TERM 1118 1174424 - 1174394 - T 71 -9.7 -3.02626 | opp_overlap 1174392 TAAGATTCAGATATA GGCGTCAGTCTAA TGTCT TTAGGCTGGCGCC TGCTAAATCTGCCCT Shew_1015 1176136 - 1174427 - | Cl- channel, voltage-gated family protein TERM 1119 1176054 - 1176067 + g 71 -6.7 -4.33928 | AGCTGCACGCTGATC TTGGC CTGG GCCAA TTTGTCTTTGAGGTC Shew_1016 1176212 - 1177129 + | hypothetical protein Shew_1017 1177122 - 1177472 + | iron-sulfur cluster insertion protein ErpA TERM 1120 1177549 - 1177522 - T 91 -11.4 -3.89822 | opp_overlap 1177528, overlap 1177528 CATTGAGCGCATAAA GAAAAAGCCAGC AATA GCTGGCTTTTTT GTATCTGTGTCCTTT TERM 1121 1177528 - 1177543 + T 100 -10.4 -5.4492 | opp_overlap 1177522 1177528 GCGCATAAAGAAAAA GCCAGC AATA GCTGGC TTTTTTGTATCTGTG TERM 1122 1177543 - 1177528 - T 100 -10.4 -5.38054 | opp_overlap 1177528, overlap 1177522 GCGCATAAAGAAAAA GCCAGC AATA GCTGGC TTTTTTGTATCTGTG Shew_1018 1178074 - 1177601 - | hypothetical protein TERM 1123 1178005 - 1178020 + g 74 -6.8 -4.4715 | GCTTAGCCTTCACCG GCTGCT GGCT AGCGGC TTTTGTGAGTTCAGC Shew_1019 1178521 - 1178135 - | hypothetical protein anmK 1179773 - 1178664 - | anhydro-N-acetylmuramic acid kinase Shew_1021 1181286 - 1179811 - | peptidase M23B TERM 1124 1181512 - 1181500 - g 74 -4.8 -4.77757 | CTGGAAAAATTAAAA GAGG GACGT CCTC TGCGCATCAAGTTGG Shew_1022 1181413 - 1182609 + | tyrosyl-tRNA synthetase TERM 1125 1182636 - 1182654 + T 100 -11.7 -5.56264 | opp_overlap 1182636 CGAATCATTTCAAGA GGCCTGC TTAAT GCAGGCC TTTTTTATGTTTGGC TERM 1126 1182654 - 1182636 - T 81 -11.7 -3.08015 | opp_overlap 1182636 CGAATCATTTCAAGA GGCCTGC TTAAT GCAGGCC TTTTTTATGTTTGGC Shew_1023 1183235 - 1182756 - | hypothetical protein Shew_1024 1183857 - 1183237 - | hypothetical protein Shew_1025 1184243 - 1183854 - | hypothetical protein Shew_1026 1185342 - 1184359 - | cobalamin biosynthesis protein CbiB Shew_1027 1186072 - 1185380 - | methylthioadenosine nucleosidase TERM 1127 1186102 - 1186121 + r 76 -10.6 -3.09289 | GGTCTAGGTGGATCT GGCCGCGC GAAG GCGCAGCC TGTCTTAAGATAATG TERM 1128 1186168 - 1186192 + r 72 -8.5 -3.61398 | opp_overlap 1186191 TAAAGTGGTGTTGTG GCGAGGTTGCG GAT CGCAAGCTAGC TTGTTGGAAAACAAG Shew_1028 1187357 - 1186752 - | hypothetical protein Shew_1029 1187809 - 1187357 - | hypothetical protein TERM 1129 1187760 - 1187745 - G 88 -7.6 -5.0133 | opp_overlap 1187745 1187744 GAGCGCTTTAAAAAA CCGAAA AATG TTTCGG CATTCTTTTTTGTAA Shew_1030 1188503 - 1187802 - | hypothetical protein TERM 1130 1188803 - 1188793 - R 71 -8.2 -3.76224 | overlap 1188794 GTTTCAGGGATGAAA CCGC AGA GCGG CCAGGGATGGCGCAC TERM 1131 1189444 - 1189414 - R 100 -11.3 -6.11644 | CCAGGCAAAAAAAAA GCGCTTTAACTCT CACTC AAAGCTAAAGCGC CAATCACAAGCCAAA gltD 1190905 - 1189496 - | glutamate synthase subunit beta gltB 1195359 - 1190911 - | glutamate synthase subunit alpha TERM 1132 1194179 - 1194193 + g 78 -12.8 -3.29144 | opp_overlap 1194169 ACCAACAGCTCACCC GGGCCG ACA CGGCCC TTCTCGACCACCTCG TERM 1133 1195787 - 1195773 - H 73 -5 -4.60924 | overlap 1195777 GAAAGGCGCCAAAAA TTGATG TAG CACCAA GAATGGCGCCATCAA Shew_1033 1195790 - 1196782 + | putative radical SAM protein Shew_1034 1196956 - 1197321 + | Hpt protein TERM 1134 1197363 - 1197390 + F 100 -17.8 -5.42975 | opp_overlap 1197356 AGCTAAGATTGATAG CGCCCTCGATGA GAGA TCATCGGGGGCG TTTTTATTTGTGTAC Shew_1035 1197527 - 1198444 + | LysR family transcriptional regulator Shew_1036 1199466 - 1198447 - | putative adenylate/guanylate cyclase TERM 1135 1199865 - 1199829 - R 74 -9.6 -3.37259 | gap 1, overlap 1199827 AATCACCTTTAAATA GCGATTCGAA-TAGCCA CGAC TGGCCAGCTCAAATCGC CTAGAAATAGCGGCT Shew_1037 1200537 - 1199866 - | DNA mismatch repair protein TERM 1136 1200800 - 1200788 - H 87 -7.7 -4.95547 | opp_overlap 1200788 GGCAGAATAATAAAA CCCTT GTC AAGGG GATTTTGATGACATT TERM 1137 1200930 - 1200958 + H 81 -3.1 -5.38326 | opp_overlap 1200935 1200938, overlap 1200924 1200931 GATCTCTAAGTGTGA ACAAATGATCACA CTG TGTGAACAATTGA TTTTTATTTAATTAC TERM 1138 1200953 - 1200935 - H 70 -6 -4.183 | opp_overlap 1200924 1200931 1200930, overlap 1200938 CTAAGTGTGAACAAA TGATCACA CTG TGTGAACA ATTGATTTTTATTTA TERM 1139 1201090 - 1201066 - H 81 -11.6 -3.25204 | opp_overlap 1201061 1201062 1201070, overlap 1201064 1201062 TGAGTTTCAAACAGA GATATCCACA GATTT TGTGGATATC CTCGAGTTTGCCTGT Shew_1038 1201232 - 1201756 + | dinucleoside polyphosphate hydrolase Shew_1039 1201791 - 1204022 + | phosphoenolpyruvate-protein phosphotransferase PtsP Shew_1040 1204127 - 1204921 + | hypothetical protein TERM 1140 1205282 - 1205272 - g 70 -5.4 -4.4009 | overlap 1205254 GCCGATTTCAGAAAA TTGG GCG CCAA GACATGGGATGCCAA thyA 1205044 - 1205895 + | thymidylate synthase TERM 1141 1205928 - 1205965 + F 100 -13.6 -3.72784 | gap 1, opp_overlap 1205931, overlap 1205932 GAGGAATTTCTGAGG TAAGGCGCGGTAGACTC TTTGT GAGTC-GCCGCGCTTTA TTAATTTATTCTGCA TERM 1142 1205932 - 1205961 + F 100 -12.2 -4.45386 | gap 1, opp_overlap 1205931, overlap 1205928 AATTTCTGAGGTAAG GCGCGGTAGACTC TTTGT GAGTC-GCCGCGC TTTATTAATTTATTC TERM 1143 1206393 - 1206411 + G 74 -3.1 -4.89233 | gap 1, opp_overlap 1206374 1206372 GATCCACTGGATTAA CGACGGCC TGAT GGC-GTTG TTTTTCATGTTGATC Shew_1042 1206202 - 1207377 + | Na+/H+ antiporter NhaA Shew_1043 1207374 - 1207757 + | hypothetical protein TERM 1144 1207831 - 1207858 + G 71 -9 -3.81488 | opp_overlap 1207831 GATGGTGCATAAGAA GGGCTCGGTGGC CAAG GCCGCCGAAACC TTATGTTTGACCCCG TERM 1145 1207858 - 1207831 - g 71 -9 -3.7941 | opp_overlap 1207831 GATGGTGCATAAGAA GGGCTCGGTGGC CAAG GCCGCCGAAACC TTATGTTTGACCCCG nhaR 1207778 - 1208686 + | transcriptional activator NhaR Shew_1045 1208751 - 1209002 + | hypothetical protein TERM 1146 1209024 - 1209047 + G 78 -11.8 -3.54129 | gap 1, overlap 1209025 CCTGACAGCCTCCTT C-GACCAGCGA CTC TCGCTGGTCTG TTTCGCCGCCCTGTG TERM 1147 1209025 - 1209045 + G 87 -15.5 -3.34715 | overlap 1209024 CTGACAGCCTCCTTC GACCAGCGA CTC TCGCTGGTC TGTTTCGCCGCCCTG Shew_1046 1208983 - 1209438 + | hypothetical protein Shew_1047 1211060 - 1209447 - | L-aspartate oxidase TERM 1148 1210723 - 1210735 + g 76 -6.9 -4.63048 | overlap 1210722 1210724 GGCGCCTTGCTCTCG TCGCC GTC GGCGG TTTCTTCTTTATCGA TERM 1149 1211158 - 1211146 - H 75 -4.8 -4.77173 | opp_overlap 1211146 GCCGTAGAAAATAAA TGCG GATAT CGCA ATTTTTTTTAGAACT Shew_1048 1211260 - 1211838 + | RNA polymerase sigma factor RpoE Shew_1049 1211878 - 1212480 + | anti sigma-E protein, RseA TERM 1150 1212939 - 1212959 + G 75 -12.5 -3.15861 | GGTGGACGTTCGCGT CTGGCCGGG CGT CCCAGCCAG TTAGTGCGCATCATC Shew_1050 1212546 - 1213478 + | sigma E regulatory protein, MucB/RseB Shew_1051 1213486 - 1213962 + | positive regulator of sigma E, RseC/MucC Shew_1052 1214071 - 1215861 + | GTP-binding protein LepA TERM 1151 1215921 - 1215903 - f 86 -13.1 -2.84919 | opp_overlap 1215903, overlap 1215900 AGTGATTGATAATGA GCGCCGC GGTTT GCGGCGC TTTGTTTGTTACAGT TERM 1152 1215903 - 1215921 + F 100 -13.8 -4.68209 | opp_overlap 1215903 1215900 AGTGATTGATAATGA GCGCCGCG GTT TGCGGCGC TTTGTTTGTTACAGT TERM 1153 1216533 - 1216513 - g 73 -9 -3.95073 | gap 1, overlap 1216514 CTCTATATTCAGAAA GC-CTGCCC AGAG GGGCAGAGC GAGTGTCCTAAGCTA Shew_1053 1216015 - 1216932 + | signal peptidase I TERM 1154 1217541 - 1217530 - g 74 -7.2 -4.22883 | GAGCAGCTAAAAGAA GCCG TTAT CGGC GTGGCCAATTCCCGC Shew_1054 1216933 - 1217610 + | ribonuclease III era 1217607 - 1218602 + | GTP-binding protein Era TERM 1155 1218622 - 1218658 + F 91 -7.3 -5.25803 | ACAGATTAATGTTAA GCCGAGGTAGTCACG CTAACGT TGTGGTTGTCTCGGC TTTTTTGTCAGCATT Shew_1056 1218707 - 1219402 + | DNA repair protein RecO Shew_1057 1219531 - 1220268 + | pyridoxal phosphate biosynthetic protein PdxJ Shew_1058 1220313 - 1220714 + | holo-acyl-carrier-protein synthase Shew_1059 1220981 - 1221523 + | hypothetical protein TERM 1156 1221574 - 1221547 - T 90 -12.8 -3.32844 | opp_overlap 1221553, overlap 1221553 GTCGCTATGGGATAA CAAAAAGGCGCC TTAG GGCGCCTTTTTT GGTGAATTGTGAGGA TERM 1157 1221568 - 1221553 - T 100 -11.8 -5.19328 | opp_overlap 1221553, overlap 1221547 ATGGGATAACAAAAA GGCGCC TTAG GGCGCC TTTTTTGGTGAATTG TERM 1158 1221553 - 1221568 + T 100 -11.8 -5.18357 | opp_overlap 1221553 1221547 ATGGGATAACAAAAA GGCGCC TTAG GGCGCC TTTTTTGGTGAATTG Shew_1060 1222873 - 1221590 - | hypothetical protein TERM 1159 1222718 - 1222732 + g 73 -12.8 -2.60486 | opp_overlap 1222712, overlap 1222701 1222717 CTCTAGCAATCTGAT GGCGCG TTT CGCGCC CTTATGACCATTGTT Shew_1061 1223808 - 1223020 - | cytochrome c assembly protein TERM 1160 1223848 - 1223871 + H 72 -3.1 -5.00765 | gap 1, overlap 1223849 AGCTTTCTTGTGGTC ATCGACCTGC GCGAG GC-GGTCGAG TTTTTATCCTTAGTT Shew_1062 1224101 - 1225474 + | signal recognition particle protein TERM 1161 1225496 - 1225539 + F 100 -17.8 -4.65895 | gap 1, opp_overlap 1225503 1225512 GACTTTGTATAGATT TAGCTAAGTCCATTAAGGGTT TTC AGCCCTTAGTGGACTT-GCTA TTTTTGCGTGAAAAA TERM 1162 1225533 - 1225503 - f 79 -11.2 -3.09491 | opp_overlap 1225496, overlap 1225512 TATAGATTTAGCTAA GTCCATTAAGGGTT TTC AGCCCTTAGTGGAC TTGCTATTTTTGCGT TERM 1163 1225600 - 1225629 + F 89 -2.7 -5.67529 | opp_overlap 1225619 CGTGCGGCTTTCTAT CTGGGACTCTTCG CGAA CACGGGGTTCCAG TTTTTATTTTTGCTT rpsP 1225680 - 1225931 + | 30S ribosomal protein S16 rimM 1225952 - 1226482 + | 16S rRNA-processing protein trmD 1226498 - 1227244 + | tRNA (guanine-N(1)-)-methyltransferase TERM 1164 1227313 - 1227298 - g 77 -7.6 -4.36063 | overlap 1227287 ATAACATCATTAAAA TGCTCA ACGA TGAGCA AATGAAGCAAGACGT rplS 1227279 - 1227629 + | 50S ribosomal protein L19 TERM 1165 1227668 - 1227695 + F 100 -12 -4.61231 | opp_overlap 1227671 1227674, overlap 1227674 GATGCAGTGTTCGCA CAATGACCCGCC TTAT GGCGGGTTTTTG TTTTTAGGCATGTGC TERM 1166 1227674 - 1227689 + F 100 -11.8 -5.61881 | opp_overlap 1227671 1227674, overlap 1227668 GTGTTCGCACAATGA CCCGCC TTAT GGCGGG TTTTTGTTTTTAGGC TERM 1167 1227689 - 1227674 - f 79 -11.8 -2.82623 | opp_overlap 1227674 1227668, overlap 1227671 GTGTTCGCACAATGA CCCGCC TTAT GGCGGG TTTTTGTTTTTAGGC Shew_1067 1228034 - 1229125 + | phospho-2-dehydro-3-deoxyheptonate aldolase tyrA 1229125 - 1230279 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 1168 1230416 - 1230432 + F 91 -11.5 -3.72576 | CAAATACCGCTGTAA GCCTCGC CCT GCGGGGC TTTGATAGCAACACC TERM 1169 1230574 - 1230609 + F 100 -15.5 -4.64861 | gap 1 AGATTAAAACTCCCT GGCGGCGTCC-GAGTG ATTGA CACTCAGGGCGCCGTC TTTCTTTTGGGCCCC Shew_1069 1230817 - 1232481 + | hydroxylamine reductase TERM 1170 1232516 - 1232494 - f 78 -10.5 -3.57309 | opp_overlap 1232494 TAAAACGCCCCCAAA CGTCCACGG TACTG CCGTGGGCG TTTTTTCTTTTTGGT TERM 1171 1232494 - 1232516 + F 100 -13.4 -5.95286 | opp_overlap 1232494 TAAAACGCCCCCAAA CGTCCACGGT ACT GCCGTGGGCG TTTTTTCTTTTTGGT Shew_1070 1232541 - 1233626 + | oxidoreductase FAD-binding subunit Shew_1071 1233877 - 1234212 + | hypothetical protein TERM 1172 1234224 - 1234256 + T 100 -16.5 -2.53015 | opp_overlap 1234226 1234232, overlap 1234232 TTAAGCTTATCGGCA AAGAAAAAGAGGACC TCT GGTCCTCTTTTTCTA TGACTTAGCAGCTCT TERM 1173 1234254 - 1234226 - T 100 -19.1 -3.5764 | opp_overlap 1234224 1234232, overlap 1234232 AAGCTTATCGGCAAA GAAAAAGAGGACC TCT GGTCCTCTTTTTC TATGACTTAGCAGCT TERM 1174 1234232 - 1234248 + T 100 -12.3 -5.00642 | opp_overlap 1234226 1234232, overlap 1234224 ATCGGCAAAGAAAAA GAGGACC TCT GGTCCTC TTTTTCTATGACTTA TERM 1175 1234248 - 1234232 - T 100 -12.3 -5.27938 | opp_overlap 1234232 1234224, overlap 1234226 ATCGGCAAAGAAAAA GAGGACC TCT GGTCCTC TTTTTCTATGACTTA Shew_1072 1236253 - 1234289 - | chorismate mutase TERM 1176 1235485 - 1235507 + g 72 -12.6 -2.56271 | opp_overlap 1235473, overlap 1235484 1235471 1235489 ACAGGGCGCCCCCTT CGACGCTGCC GAT GGCGGCGACG CTGTTGTCGTCGGCC TERM 1177 1236331 - 1236313 - R 100 -12.4 -5.73978 | ACTACAAATAAAAAA GCCCCCCA TAA TGGGAGGC CTTGGAATTTTTACT TERM 1178 1236495 - 1236473 - R 83 -5.6 -5.26875 | opp_overlap 1236473, overlap 1236477 1236489 1236492 CTGTCAATCAAAAAA GGGACAAAGT GAG AATTTATCCC TTTGGGAATAAGCCG TERM 1179 1236565 - 1236546 - R 100 -13.6 -4.23674 | CGCTATTAATAGAAA GCGCACCT ATTG AGGTGCGC CGGGAGAGTAAAAGA Shew_1073 1237633 - 1237259 - | sigma 54 modulation protein/ribosomal protein S30EA Shew_1074 1237896 - 1238591 + | cytochrome B561 TERM 1180 1238702 - 1238664 - T 76 -8.4 -3.90112 | gap 1, opp_overlap 1238668 1238675 1238697, overlap 1238665 1238667 1238675 CCGCGCTGAAGCAAA GGATAAAAAAAGGGAGC TTAACT GCTCCC-TTTTTTATTC GTCTAACGAGTGATC TERM 1181 1238702 - 1238665 - T 72 -10 -2.93853 | opp_overlap 1238668 1238675 1238697, overlap 1238664 1238667 1238675 CGCGCTGAAGCAAAG GATAAAAAAAGGGAGC TTAACT GCTCCCTTTTTTATTC GTCTAACGAGTGATC TERM 1182 1238668 - 1238699 + T 74 -10.3 -3.2614 | opp_overlap 1238667 1238664 1238665 1238675, overlap 1238675 1238697 GCTGAAGCAAAGGAT AAAAAAAGGGAGC TTAACT GCTCCCTTTTTTA TTCGTCTAACGAGTG TERM 1183 1238692 - 1238675 - T 100 -8.4 -5.75599 | opp_overlap 1238668 1238675, overlap 1238667 1238664 1238665 CAAAGGATAAAAAAA GGGAGC TTAACT GCTCCC TTTTTTATTCGTCTA TERM 1184 1238675 - 1238692 + T 100 -8.4 -5.5353 | opp_overlap 1238675 1238667 1238664 1238665, overlap 1238668 CAAAGGATAAAAAAA GGGAGC TTAACT GCTCCC TTTTTTATTCGTCTA Shew_1075 1239222 - 1238761 - | cytochrome c, class II Shew_1076 1239375 - 1239728 + | Trp operon repressor Shew_1077 1240235 - 1239804 - | hypothetical protein TERM 1185 1240278 - 1240245 - R 95 -8.3 -5.22137 | gap 2, opp_overlap 1240245 1240247 AAGCATAAAATAAAA GAGTCGGCTTCACCT AATAAA AGGTG--GCCGACTC TCTTCAGAATCCTAC Shew_1078 1240980 - 1240366 - | peptidylprolyl isomerase, FKBP-type TERM 1186 1241661 - 1241637 - H 74 -9.9 -3.33037 | opp_overlap 1241638, overlap 1241638 ATTTGAAATGACTAA GCCCGCTCCCC ATC AAGGAGCGGGT TTTTTTGTTTCTGGG TERM 1187 1241638 - 1241660 + H 100 -12 -6.02919 | opp_overlap 1241637 1241638 TTTGAAATGACTAAG CCCGCTCC CCATCAA GGAGCGGG TTTTTTTGTTTCTGG TERM 1188 1241660 - 1241638 - H 84 -13.4 -2.5934 | opp_overlap 1241638, overlap 1241637 TTTGAAATGACTAAG CCCGCTCCCC ATC AAGGAGCGGG TTTTTTTGTTTCTGG TERM 1189 1242201 - 1242218 + G 73 -8.4 -4.10453 | ATCGGTTGTCGATAT CGCTGC CAGTAA GCAGCG TTTTGCCGAGCTTTC thrA 1241698 - 1244166 + | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 1190 1245036 - 1245046 + G 71 -4.6 -4.65838 | GCAAACTATGTTACC TCCG GCT CGGG TTTTTCCCATATATG Shew_1080 1244163 - 1245113 + | homoserine kinase TERM 1191 1245852 - 1245835 - g 75 -11.3 -3.46202 | opp_overlap 1245851 AAACAGACCAATCAA GGCGATC CTGT GATCGCC GTGCCCAGCGGTAAT Shew_1081 1245127 - 1246410 + | threonine synthase TERM 1192 1246437 - 1246458 + F 95 -8.7 -5.24531 | opp_overlap 1246437 TTATTCATGCTTAAA GCCAAGGCG ATAA TGCTTTGGC TTTTTTATGCCCGCT Shew_1082 1246769 - 1247065 + | hypothetical protein TERM 1193 1247071 - 1247086 + T 71 -9 -3.37493 | CCTGCTTTAGCGTGT CTGGCT ACGT AGCCAG TTGATCTCTTGGGGC Shew_1083 1247913 - 1247062 - | apurinic endonuclease Apn1 TERM 1194 1248939 - 1248903 - g 74 -7.9 -4.19704 | overlap 1248905 1248927 GAAGCTGATGCAAAA TACCATGGCCCGCACCC AGA AAATGCAGGCCATGGGT CAGCTGGTAGGGGGC TERM 1195 1248937 - 1248905 - g 90 -14.9 -3.69483 | overlap 1248903 1248927 AGCTGATGCAAAATA CCATGGCCCGCACCC AGA AAATGCAGGCCATGG GTCAGCTGGTAGGGG Shew_1084 1248034 - 1250070 + | PAS/PAC sensor hybrid histidine kinase Shew_1085 1250067 - 1251161 + | response regulator receiver protein TERM 1196 1251366 - 1251353 - g 79 -8.1 -4.41633 | TATTCTTAAAAATAA GCAGC AGCG GCTGC AACATGGCGAGGCCG Shew_1086 1251288 - 1251830 + | hemerythrin HHE cation binding domain-containing protein TERM 1197 1251886 - 1251858 - T 93 -15.5 -3.03854 | opp_overlap 1251858 1251864, overlap 1251864 AACAACCTATAGATA CAAAAATAGCGCC TAA GGCGCTATTTTTA TTGTTTATTTACATC TERM 1198 1251858 - 1251886 + T 100 -13.3 -4.34285 | opp_overlap 1251858 1251864, overlap 1251864 AACAACCTATAGATA CAAAAATAGCGCC TAA GGCGCTATTTTTA TTGTTTATTTACATC TERM 1199 1251880 - 1251864 - T 100 -12.3 -5.07275 | opp_overlap 1251858 1251864, overlap 1251858 CTATAGATACAAAAA TAGCGCC TAA GGCGCTA TTTTTATTGTTTATT TERM 1200 1251864 - 1251880 + T 100 -12.3 -5.44198 | opp_overlap 1251864 1251858, overlap 1251858 CTATAGATACAAAAA TAGCGCC TAA GGCGCTA TTTTTATTGTTTATT Shew_1087 1252086 - 1251895 - | hypothetical protein TERM 1201 1252296 - 1252267 - R 100 -15.3 -3.50869 | opp_overlap 1252274, overlap 1252274 TATTACTGCAGATAA TAAAAAAGCCAGT GAAA ACTGGCTTTTTTA ATCGGCTAAGGTTGC TERM 1202 1252274 - 1252289 + r 93 -9 -5.15634 | opp_overlap 1252274 1252267 GCAGATAATAAAAAA GCCAGT GAAA ACTGGC TTTTTTAATCGGCTA TERM 1203 1252289 - 1252274 - R 100 -9 -5.60689 | opp_overlap 1252274, overlap 1252267 GCAGATAATAAAAAA GCCAGT GAAA ACTGGC TTTTTTAATCGGCTA pgi 1253953 - 1252316 - | glucose-6-phosphate isomerase TERM 1204 1253666 - 1253690 + g 74 -7.7 -4.32048 | GTCGGCCTCGGCTCT GAGGGCCGTGT GCA GCACGGCGCGC TTTTCGGTGTTGTTG Shew_1089 1254923 - 1253967 - | transaldolase B TERM 1205 1255141 - 1255158 + r 100 -11.3 -4.7373 | opp_overlap 1255141 TGACAGGAAAAAAAA TCGCTGC CTAA GCAGCGA TTTTTAGTGAGGTCG TERM 1206 1255158 - 1255141 - R 100 -11.3 -5.90981 | opp_overlap 1255141 TGACAGGAAAAAAAA TCGCTGC CTAA GCAGCGA TTTTTAGTGAGGTCG Shew_1090 1256300 - 1255197 - | OmpA/MotB domain-containing protein TERM 1207 1255694 - 1255749 + g 77 -11 -3.55866 | gap 1, opp_overlap 1255687 1255685 CAACCACAGGTGCTG CTACAGCGG-CTGGTGCTGCGCGACCG AAG CGGTAGCTCAGCTCAAGACCCCAGTAG TTGCTTTCCATATCA TERM 1208 1256486 - 1256507 + r 100 -10.1 -5.31275 | opp_overlap 1256486 CTTGACAATAAAAAA GGCGTTTCC GCTA GGAATCGCC TTTTTTCTAGTAGAA TERM 1209 1256507 - 1256486 - R 100 -10.1 -5.55769 | opp_overlap 1256486 CTTGACAATAAAAAA GGCGTTTCC GCTA GGAATCGCC TTTTTTCTAGTAGAA Shew_1091 1258914 - 1256548 - | putative phosphoketolase Shew_1092 1259341 - 1260819 + | amino acid carrier protein TERM 1210 1260865 - 1260883 + F 100 -12.4 -5.24989 | opp_overlap 1260865 GTTCCATCTAAAAAA CCACGCTC CAA GGGCGTGG TTTTTTACTGTCTGC TERM 1211 1260883 - 1260865 - f 93 -10.2 -5.08824 | opp_overlap 1260865 GTTCCATCTAAAAAA CCACGCTC CAA GGGCGTGG TTTTTTACTGTCTGC Shew_1093 1260947 - 1261723 + | hypothetical protein TERM 1212 1261775 - 1261789 + T 100 -11.4 -5.63374 | opp_overlap 1261775 AACGCGATAAAAAAA GCAGCC ATA GGCTGC TTTTTTTAGTCTTAA TERM 1213 1261789 - 1261775 - T 100 -11.4 -5.63504 | opp_overlap 1261775 AACGCGATAAAAAAA GCAGCC ATA GGCTGC TTTTTTTAGTCTTAA Shew_1094 1263310 - 1261904 - | peptidase M28 Shew_1095 1263446 - 1263742 + | ArsR family transcriptional regulator TERM 1214 1263793 - 1263770 - T 70 -6.6 -4.13246 | opp_overlap 1263770 TAGCGCAGATAGAAA GCTGATGGGC GACT GGCCGTCAGC TTTTTTGTTTTTTTG TERM 1215 1263770 - 1263793 + T 100 -8.8 -6.12458 | opp_overlap 1263770 TAGCGCAGATAGAAA GCTGATGGGC GACT GGCCGTCAGC TTTTTTGTTTTTTTG TERM 1216 1263942 - 1263929 - T 100 -9.5 -5.61596 | opp_overlap 1263929 ACGGGCACAAAAAAA CCGGC CTAA GCCGG TTTTTTTATATCGCT TERM 1217 1263929 - 1263942 + T 100 -9.5 -5.72616 | opp_overlap 1263929 ACGGGCACAAAAAAA CCGGC CTAA GCCGG TTTTTTTATATCGCT rpsT 1264230 - 1263964 - | 30S ribosomal protein S20 TERM 1218 1264167 - 1264182 + g 73 -5.4 -4.66833 | TAGAACGACGGCTAG CGTTGT GCTG ACGACG TTTTTCAGATTGAAG Shew_1097 1264478 - 1266037 + | integral membrane protein MviN TERM 1219 1266654 - 1266634 - g 75 -13.3 -2.55074 | overlap 1266639 GCCAAGGGGAACCTA GAGCAGGCA AGG CGCCTGCTC GGCCATCCATATGCC Shew_1098 1266103 - 1267038 + | riboflavin biosynthesis protein RibF Shew_1099 1267071 - 1269893 + | isoleucyl-tRNA synthetase TERM 1220 1270266 - 1270280 + G 75 -5.7 -4.63218 | CAACATGGCTTTGTG GTCGA TTTTC TCGAC TTTTATTGGAAGACG Shew_1100 1269903 - 1270415 + | lipoprotein signal peptidase Shew_1101 1270419 - 1270841 + | peptidylprolyl isomerase, FKBP-type TERM 1221 1271656 - 1271683 + G 71 -11.2 -3.14463 | overlap 1271658 1271681 CGAGAAGGTTGCCGT TACCGCTGGCGC ATCG GCGCCGGAGGTG TTGGTACAACAGGTT TERM 1222 1271658 - 1271681 + G 71 -11.6 -3.13403 | overlap 1271656 AGAAGGTTGCCGTTA CCGCTGGCGC ATCG GCGCCGGAGG TGTTGGTACAACAGG Shew_1102 1270844 - 1271794 + | hydroxymethylbutenyl pyrophosphate reductase TERM 1223 1271835 - 1271820 - f 89 -10.4 -4.46212 | opp_overlap 1271820 GTTTTGATGAGAAAA GGAGGC TAAA GCCTCC TTTTTTGTTGCCTAA TERM 1224 1271820 - 1271835 + F 100 -10.4 -5.4833 | opp_overlap 1271820 GTTTTGATGAGAAAA GGAGGC TAAA GCCTCC TTTTTTGTTGCCTAA Shew_1103 1272026 - 1272547 + | type IV pilus modification protein PilV Shew_1104 1272548 - 1273534 + | prepilin-type cleavage/methylation-like protein Shew_1105 1273540 - 1273974 + | type IV pilus assembly protein PilX Shew_1106 1273979 - 1277527 + | type IV pilin biogenesis protein, putative Shew_1107 1277531 - 1277923 + | methylation site containing protein TERM 1225 1278235 - 1278252 + T 71 -7.7 -3.75332 | opp_overlap 1278235 TATTTTGGTATAGGA GTCCCTG CTAT TAGGGAC TTTAAATTAGCAGCT Shew_1108 1278750 - 1278259 - | methylation site containing protein Shew_1109 1279399 - 1278887 - | type IV pilus biogenesis protein, putative Shew_1110 1279650 - 1279988 + | nitrogen regulatory protein P-II TERM 1226 1280034 - 1279997 - T 77 -11.5 -2.79671 | opp_overlap 1279997 1280007, overlap 1280007 AGTTTAAGTCTAAAG TTATAAAAAACCGCTGA TATC TCAGCGGTTTTTTATTG TCTGTAGATAATCAT TERM 1227 1279997 - 1280034 + T 87 -13.7 -2.92642 | opp_overlap 1279997 1280007, overlap 1280007 AGTTTAAGTCTAAAG TTATAAAAAACCGCTGA TATC TCAGCGGTTTTTTATTG TCTGTAGATAATCAT TERM 1228 1280007 - 1280024 + T 100 -11.3 -5.62045 | opp_overlap 1280007 1279997, overlap 1279997 TAAAGTTATAAAAAA CCGCTGA TATC TCAGCGG TTTTTTATTGTCTGT TERM 1229 1280024 - 1280007 - T 100 -11.3 -5.33866 | opp_overlap 1279997 1280007, overlap 1279997 TAAAGTTATAAAAAA CCGCTGA TATC TCAGCGG TTTTTTATTGTCTGT Shew_1111 1281092 - 1280073 - | LacI family transcription regulator Shew_1112 1281505 - 1284129 + | TonB-dependent receptor TERM 1230 1284167 - 1284150 - f 76 -8.3 -3.90586 | opp_overlap 1284150 ACATTAGTGTACAAA GCCCGGC TTAA GCTGGGC TTTTTATTAGCACCA TERM 1231 1284150 - 1284167 + F 93 -10.5 -5.06414 | opp_overlap 1284150 ACATTAGTGTACAAA GCCCGGC TTAA GCTGGGC TTTTTATTAGCACCA Shew_1113 1284252 - 1285778 + | tryptophan halogenase TERM 1232 1285825 - 1285857 + T 86 -12.7 -3.17075 | opp_overlap 1285823, overlap 1285856 AGGGCACAATCGATT TGGCGGGGCGTAG TTTATTC CAACGTCCCGCCA TTAGCTTGCAGCGGA Shew_1114 1286595 - 1285876 - | SapC family protein Shew_1115 1287898 - 1290564 + | Beta-N-acetylhexosaminidase TERM 1233 1290644 - 1290669 + F 93 -11.9 -3.7948 | opp_overlap 1290638 1290642 1290640 GTAATTGAAGATAGC GCGGTTATCCG AGGT CCGATAACCGC TTTCCTCCCTGTTAA Shew_1116 1290876 - 1291775 + | ATPase, BadF/BadG/BcrA/BcrD type TERM 1234 1291972 - 1291992 + G 73 -9 -3.9777 | gap 1 GAGCCGATTCTGCTG GCC-GGCAC CCTG GTGCCTGGC TTTATCGATGTTCAG Shew_1117 1291843 - 1292973 + | N-acetylglucosamine-6-phosphate deacetylase Shew_1118 1293141 - 1294304 + | hypothetical protein TERM 1235 1294385 - 1294374 - f 71 -4.4 -4.66833 | opp_overlap 1294383, overlap 1294383 TGCTAAGGCTAAAAA GTCA AAAA TGAC AGCGTTGTCTTTTTT TERM 1236 1294383 - 1294394 + F 90 -4.4 -5.59879 | opp_overlap 1294374 1294383 TAAAAAGTCAAAAAT GACA GCGT TGTC TTTTTTCTGTTTATG TERM 1237 1294446 - 1294430 - f 74 -7.9 -4.01902 | opp_overlap 1294435 ACATCGATGAAACAA GGGGGCA ACT TGCGCCC AAGCTGTAATGTACC Shew_1119 1294566 - 1295822 + | glucose/galactose transporter TERM 1238 1295861 - 1295847 - f 77 -7.1 -4.43477 | opp_overlap 1295847 TTTATCGAATTAAAA GGAGC CGAGT GCTCC TTTTTTGTTGCCTAA TERM 1239 1295847 - 1295861 + F 100 -7.1 -5.4833 | opp_overlap 1295847 TTTATCGAATTAAAA GGAGC CGAGT GCTCC TTTTTTGTTGCCTAA TERM 1240 1295974 - 1296006 + F 79 -12.1 -2.78384 | opp_overlap 1295981, overlap 1295979 1295981 GGTAAATTTCCGATA TAAAAAAGCCCCGAC ATT GTCGAGGCTGTTTTA TATGGTGCCGGCACC TERM 1241 1295979 - 1296001 + F 80 -7.6 -4.57353 | opp_overlap 1295981, overlap 1295974 1295981 ATTTCCGATATAAAA AAGCCCCGAC ATT GTCGAGGCTG TTTTATATGGTGCCG TERM 1242 1295999 - 1295981 - f 100 -12.4 -5.36441 | opp_overlap 1295979 1295974 1295981 TTCCGATATAAAAAA GCCCCGAC ATT GTCGAGGC TGTTTTATATGGTGC TERM 1243 1295981 - 1295999 + F 82 -10.2 -3.89814 | opp_overlap 1295981, overlap 1295979 1295974 TTCCGATATAAAAAA GCCCCGAC ATT GTCGAGGC TGTTTTATATGGTGC TERM 1244 1296357 - 1296382 + F 79 -11.3 -3.03309 | overlap 1296375 TTTAGCACAGTGGCT GTGGTTAAAAC TCAG GTTTTAGCCAC TAATTGTTCTTAAGG TERM 1245 1296889 - 1296911 + G 91 -11.2 -4.43844 | CTATCTTATCTCGAC CGCCGACGGC AGG GCCATTGGCG TTTTCTCACTCATCG Shew_1120 1296554 - 1297108 + | cytochrome B561 Shew_1121 1297162 - 1297695 + | hypothetical protein TERM 1246 1297724 - 1297749 + T 91 -10.5 -4.82901 | opp_overlap 1297724 1297730, overlap 1297730 AACCCCCCCATTATA GAAAAAGCGCC AATA GGCGCTTTTTA TTTTTATAGAGCGAG TERM 1247 1297749 - 1297724 - T 71 -10.5 -2.78715 | opp_overlap 1297724 1297730, overlap 1297730 AACCCCCCCATTATA GAAAAAGCGCC AATA GGCGCTTTTTA TTTTTATAGAGCGAG TERM 1248 1297743 - 1297730 - T 93 -9.5 -5.00895 | opp_overlap 1297730 1297724, overlap 1297724 CCCATTATAGAAAAA GCGCC AATA GGCGC TTTTTATTTTTATAG TERM 1249 1297730 - 1297743 + T 100 -9.5 -5.69262 | opp_overlap 1297724 1297730, overlap 1297724 CCCATTATAGAAAAA GCGCC AATA GGCGC TTTTTATTTTTATAG Shew_1122 1298050 - 1297772 - | hypothetical protein Shew_1123 1299159 - 1298053 - | A/G-specific adenine glycosylase trmB 1299395 - 1300111 + | tRNA (guanine-N(7))-methyltransferase Shew_1125 1300142 - 1300465 + | hypothetical protein TERM 1250 1300507 - 1300476 - g 75 -11.6 -3.52459 | opp_overlap 1300475 1300472, overlap 1300479 ACTAATGCCACAGAA GGACCTGCTCGAGA CTAT TATCGAGCAGGTGC GTCCTCTGCTGGGAA TERM 1251 1300504 - 1300479 - g 73 -11.9 -2.89565 | opp_overlap 1300475 1300472, overlap 1300476 AATGCCACAGAAGGA CCTGCTCGAGA CTAT TATCGAGCAGG TGCGTCCTCTGCTGG TERM 1252 1300616 - 1300638 + G 87 -12 -4.18197 | opp_overlap 1300615 1300610 ATGGTCAAACCATAG GGGCTGGAGA CTA TCTCGAGCCC TTTTCGATCCAGAGT Shew_1126 1300465 - 1301379 + | glutaminase Shew_1127 1301679 - 1302509 + | hypothetical protein TERM 1253 1302549 - 1302575 + F 100 -9.4 -5.88565 | overlap 1302550 AGCAAGATCCACATT TCCCTGCACTTA CCT TGGGTGCAGGGC TTTTTTTATTCTGGA TERM 1254 1302550 - 1302574 + F 100 -12.9 -4.11512 | overlap 1302549 GCAAGATCCACATTT CCCTGCACTTA CCT TGGGTGCAGGG CTTTTTTTATTCTGG Shew_1128 1302855 - 1303796 + | LysR family transcriptional regulator TERM 1255 1303932 - 1303898 - f 77 -11.5 -2.68545 | opp_overlap 1303898, overlap 1303897 1303895 1303900 1303903 TTCTGATAACAAGAC GATAACCCCCGGTAT TTTTG ATGTCGGGGGTTATC TTTTTATAATCATGT TERM 1256 1303898 - 1303932 + F 100 -16.6 -4.93898 | opp_overlap 1303898 1303897 1303895 1303900 1303903 TTCTGATAACAAGAC GATAACCCCCGGTATT TTT GATGTCGGGGGTTATC TTTTTATAATCATGT TERM 1257 1304216 - 1304240 + F 100 -17.3 -5.45802 | ATCCTAGTTTTGGTT TACCCCAGCAA AGA TTGCTGGGGTA TTTTTCTTTTAGGGC Shew_1129 1304516 - 1305220 + | hypothetical protein TERM 1258 1305309 - 1305287 - T 100 -14.9 -5.1417 | opp_overlap 1305287 CGATAAAACTAAAAA GGCCGCTCT GGTTG AGAGCGGCC TTTCTTATGGCTAAC TERM 1259 1305287 - 1305309 + T 100 -14.9 -4.33417 | opp_overlap 1305287 CGATAAAACTAAAAA GGCCGCTCT GGTTG AGAGCGGCC TTTCTTATGGCTAAC Shew_1130 1307196 - 1305355 - | hypothetical protein TERM 1260 1306070 - 1306051 - G 88 -4.2 -5.45652 | overlap 1306053 1306054 AGGCTTAACAAAAAA CACCTCGT CCAG ACGAGAGG AGATGTTATCTATCA TERM 1261 1306068 - 1306053 - G 70 -5.4 -4.36592 | overlap 1306051 1306054 GCTTAACAAAAAACA CCTCGT CCAG ACGAGA GGAGATGTTATCTAT TERM 1262 1307141 - 1307118 - G 74 -10.2 -3.67792 | GTAGAGGGAGTGAAA CTGGCGCGGC GTGC ACTGCGCCAG AAAGGAGTGTCGCCA TERM 1263 1307305 - 1307331 + r 78 -10.3 -3.62046 | gap 1, opp_overlap 1307303, overlap 1307296 GTGTTAGAAAATGTT TCTGTTCCCCTC GAAT GAGGGGAA-AGA TTATTCGCAAAATAG Shew_1131 1308471 - 1307332 - | putative oxygen-independent coproporphyrinogen III oxidase Shew_1132 1309142 - 1308471 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 1264 1309177 - 1309161 - R 100 -15.1 -4.16033 | opp_overlap 1309155 CTTAAATAACAACAA GCCGCGC GGG GCGCGGC TTCAACTGGGTTTGA Shew_1133 1309646 - 1309212 - | hypothetical protein Shew_1134 1310023 - 1309733 - | hypothetical protein TERM 1265 1309931 - 1309963 + g 72 -9.9 -3.61654 | gap 1, opp_overlap 1309945 CACCTTAAGCTCGTC GCC-GTGGGGACCA ACAATC TGGTCCCGACTGGC TTTAGGCTGAATATA Shew_1135 1310572 - 1310024 - | protein of unknown function YGGT TERM 1266 1310408 - 1310393 - G 74 -11.8 -3.10164 | TGAGGCAGTATCTAA GCCGCC CAGC GGCGGC AGGAAGCGGCGCATG Shew_1136 1311451 - 1310633 - | pyrroline-5-carboxylate reductase Shew_1137 1312234 - 1311533 - | alanine racemase domain-containing protein TERM 1267 1312090 - 1312078 - G 78 -6.2 -4.7254 | opp_overlap 1312077 1312086 AGTTTTCACCAAAAA GCCG CTGCC CGGC ATCATATGCCGCTAC Shew_1138 1312270 - 1313307 + | twitching motility protein Shew_1139 1313320 - 1314432 + | twitching motility protein TERM 1268 1314474 - 1314456 - f 86 -7.5 -5.03314 | opp_overlap 1314456 TGCACTTTGAAAAAA CCGATAA TCCCT TTATCGG TTTTTTTATGTGTGG TERM 1269 1314456 - 1314474 + F 100 -7.5 -5.76633 | opp_overlap 1314456 TGCACTTTGAAAAAA CCGATAA TCCCT TTATCGG TTTTTTTATGTGTGG TERM 1270 1314586 - 1314576 - g 75 -2.4 -5.12987 | overlap 1314578 GCAAAGAAAAAGAAA GCGC GTT GGGC AACACAGACAAAAAC Shew_1140 1314559 - 1315626 + | ferrochelatase TERM 1271 1315751 - 1315763 + T 73 -9.1 -3.48395 | opp_overlap 1315749 TCACTTCTATCAATT GCCTG TGG CAGGC TTATGTGCAAGCACT Shew_1141 1317056 - 1316043 - | transposase IS116/IS110/IS902 family protein TERM 1272 1317465 - 1317454 - H 72 -7.2 -4.09511 | opp_overlap 1317454 1317453 AATAGGTTTGGAAAA CGCG CATG CGCG ATTTGACGGATGGTG Shew_1142 1317630 - 1319018 + | putative transcriptional regulator TERM 1273 1319067 - 1319028 - T 95 -11.7 -4.19678 | gap 3, opp_overlap 1319024 1319034 1319038, overlap 1319033 1319034 GCATAGGCTAACAAA TCAAAGCACTCGGACGCAGC AAA GCTGCG-CCG-GTG-TTTGA GGCGTTATACTTTTA TERM 1274 1319063 - 1319033 - T 80 -8.3 -4.21141 | gap 2, opp_overlap 1319024 1319034 1319038, overlap 1319028 1319034 GGCTAACAAATCAAA GCACTCGGACGCAGC AAA GCTGCG-CCG-GTGT TTGAGGCGTTATACT TERM 1275 1319034 - 1319062 + T 89 -11.8 -3.58533 | gap 2, opp_overlap 1319033 1319028 1319034, overlap 1319024 1319038 GCTAACAAATCAAAG CACTCGGACGCAGC AAA GCTGCG-CCG-GTG TTTGAGGCGTTATAC TERM 1276 1319062 - 1319034 - T 81 -11.8 -3.11962 | gap 2, opp_overlap 1319034 1319024 1319038, overlap 1319033 1319028 GCTAACAAATCAAAG CACTCGGACGCAGC AAA GCTGCG-CCG-GTG TTTGAGGCGTTATAC TERM 1277 1319038 - 1319059 + T 81 -12.3 -2.6162 | gap 1, opp_overlap 1319034 1319033 1319028, overlap 1319034 1319024 ACAAATCAAAGCACT CGGACGCAGC AAA GCTGCG-CCG GTGTTTGAGGCGTTA TERM 1278 1319845 - 1319835 - T 70 -5.4 -4.3255 | opp_overlap 1319828 1319835 TTGCTAAGGAACAAA CCAA GCT TTGG TTGTGTTCTCTCTAA TERM 1279 1320059 - 1320042 - T 91 -9.8 -4.72272 | opp_overlap 1320032 TCCGCGCAGCAAAAA GCGGCC TTGTTT GGCCGC CTTCGAACGTTCAAA Shew_1143 1320496 - 1320077 - | Holliday junction resolvase-like protein Shew_1144 1321075 - 1320518 - | hypothetical protein Shew_1145 1321421 - 1321092 - | translation initiation factor Sui1 TERM 1280 1321190 - 1321211 + g 86 -5.7 -5.11033 | overlap 1321192 TGTTGAACTCTTTTA CCGTGCCGC CGCA GCCGCACTG TTTTTTCAGCTTCTG TERM 1281 1321483 - 1321470 - R 72 -8.1 -3.87149 | TTTATCAAATTGAAA CTCCC TTGT GGGAG GAGTAATTCTTAGAT TERM 1282 1321526 - 1321509 - R 100 -11.3 -5.60864 | TAGATACGAAAAAAA GACCACC CTAG GGTGGTC ATGGATAAGCATAGA Shew_1146 1321952 - 1321638 - | hypothetical protein Shew_1147 1322126 - 1322689 + | hypothetical protein TERM 1283 1322720 - 1322735 + F 100 -11.8 -5.21709 | opp_overlap 1322720 AGAGTTAAGATGAAA GCGGCC AAGA GGCCGC TTTTTTAATGTCCCG TERM 1284 1322735 - 1322720 - f 93 -11.8 -3.94184 | opp_overlap 1322720 AGAGTTAAGATGAAA GCGGCC AAGA GGCCGC TTTTTTAATGTCCCG Shew_1148 1322950 - 1323399 + | hypothetical protein TERM 1285 1323421 - 1323447 + T 74 -10.9 -2.65081 | gap 1, overlap 1323420 1323417 ACTCAAGAGCCTATC GC-TGGCGAGTC ATCC GGCTCGCCACGC CTATCTTTTAACTCG Shew_1149 1324423 - 1323548 - | LysR family transcriptional regulator Shew_1150 1324509 - 1324931 + | transmembrane pair domain-containing protein TERM 1286 1325009 - 1325049 + F 87 -10 -4.41087 | gap 2, opp_overlap 1325022 TATTCTTATATTGGA GATGCAGGCAGAAGGATATA AAA TGTATCC--CTGTCTGCATC TTTATATTTGATTGT TERM 1287 1325466 - 1325454 - g 71 -9.1 -3.85698 | CCTGCCGCTCAGAAA GCCCA ATA TGGGC AAGCCAGACAGAATA Shew_1151 1325148 - 1325852 + | OmpA/MotB domain-containing protein Shew_1152 1325882 - 1326706 + | MscS mechanosensitive ion channel TERM 1288 1326749 - 1326732 - T 100 -12.7 -4.81551 | opp_overlap 1326732 GATGGACAGTAAAAA GGTCGGC ATTT GCCGACC TTTTTTGTGCCTGAA TERM 1289 1326732 - 1326749 + T 100 -12.7 -5.28176 | opp_overlap 1326732 GATGGACAGTAAAAA GGTCGGC ATTT GCCGACC TTTTTTGTGCCTGAA Shew_1154 1327611 - 1326958 - | hypothetical protein Shew_1155 1327929 - 1328936 + | threonine aldolase TERM 1290 1328970 - 1328999 + T 95 -13.1 -3.32844 | gap 1, opp_overlap 1328970 1328976, overlap 1328976 CAGCCATAGTGAAAG C-AAAAAGCCATCC TCT GGATGGCTTTTTTG TTATCAGGTAAACGG TERM 1291 1328998 - 1328970 - T 85 -13.3 -2.82803 | opp_overlap 1328970 1328976, overlap 1328976 CAGCCATAGTGAAAG CAAAAAGCCATCC TCT GGATGGCTTTTTT GTTATCAGGTAAACG TERM 1292 1328976 - 1328992 + T 100 -12.3 -5.55769 | opp_overlap 1328970 1328976, overlap 1328970 TAGTGAAAGCAAAAA GCCATCC TCT GGATGGC TTTTTTGTTATCAGG TERM 1293 1328992 - 1328976 - T 100 -12.3 -5.00138 | opp_overlap 1328976 1328970, overlap 1328970 TAGTGAAAGCAAAAA GCCATCC TCT GGATGGC TTTTTTGTTATCAGG Shew_1156 1329849 - 1329016 - | hypothetical protein TERM 1294 1329921 - 1329885 - R 100 -16.1 -4.0825 | gap 1, opp_overlap 1329916 TCTTTAACCAAATAA GCAGCCTGACAACCTA GTTTAA TAGGT-GTCAGGCTGC GGGTCGCTGCGCCTT Shew_1157 1331572 - 1329935 - | alkaline phosphatase Shew_1158 1333095 - 1331587 - | alkaline phosphatase Shew_1159 1333367 - 1333735 + | thioesterase superfamily protein TERM 1295 1333834 - 1333863 + T 72 -5.7 -4.47049 | opp_overlap 1333840, overlap 1333840 CCAGAAATAGCCAAT AAAAAAGAGGGCG GATA TGCCCTCTTTATC TTTATCTTTATCTTT TERM 1296 1333840 - 1333857 + T 88 -9.1 -4.47049 | opp_overlap 1333840, overlap 1333834 ATAGCCAATAAAAAA GAGGGCG GATA TGCCCTC TTTATCTTTATCTTT TERM 1297 1333857 - 1333840 - T 100 -8.4 -5.49234 | opp_overlap 1333840 1333834 ATAGCCAATAAAAAA GAGGGC GGATAT GCCCTC TTTATCTTTATCTTT Shew_1160 1334126 - 1333920 - | hypothetical protein TERM 1298 1334203 - 1334185 - R 100 -12.4 -3.78329 | GCCCATTAAGCGAAA GCCTCCCC AAA AGGGAGGC TCATAATGGCTAGGG Shew_1161 1335586 - 1334285 - | NADH dehydrogenase TERM 1299 1335057 - 1335072 + g 72 -6 -4.47259 | overlap 1335058 ACGCCTGTCGCCCCG GCGCCG ACCA CGGCGA TTTTGATCTTGTCGT Shew_1162 1336273 - 1335899 - | hypothetical protein TERM 1300 1336684 - 1336648 - H 71 -8.8 -3.53531 | opp_overlap 1336653, overlap 1336649 1336651 1336659 TTACTAATATGATAA GCAGTTGTAAATGACG CTGCC CGTCATTCACATCTGT CTGCCGTCTGATGAA TERM 1301 1336683 - 1336649 - H 82 -12.3 -2.71637 | opp_overlap 1336653, overlap 1336648 1336651 1336659 TACTAATATGATAAG CAGTTGTAAATGACG CTGCC CGTCATTCACATCTG TCTGCCGTCTGATGA Shew_1163 1336740 - 1337897 + | RND family efflux transporter MFP subunit Shew_1164 1337910 - 1341032 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 1302 1341089 - 1341073 - T 100 -12.3 -5.24129 | opp_overlap 1341073 TCTGGGCACAAAAAA GGCGACT TCA AGTCGCC TTTTTTATCGAACCG TERM 1303 1341073 - 1341089 + T 100 -12.3 -5.24129 | opp_overlap 1341073 TCTGGGCACAAAAAA GGCGACT TCA AGTCGCC TTTTTTATCGAACCG Shew_1165 1341319 - 1341110 - | cold-shock DNA-binding domain-containing protein TERM 1304 1341717 - 1341745 + r 88 -10.9 -4.19817 | opp_overlap 1341717 CAGGGAGAAGAAAAA GGCTCGCCGGCTA TAG TTGCTGACGAGCC TTTTAGCTAGCTGAA TERM 1305 1341745 - 1341717 - R 100 -10.9 -5.20333 | opp_overlap 1341717 CAGGGAGAAGAAAAA GGCTCGCCGGCTA TAG TTGCTGACGAGCC TTTTAGCTAGCTGAA TERM 1306 1341903 - 1341917 + r 71 -2.1 -5.05113 | overlap 1341900 1341899 AAGCCGGGTGTTTCA TCGCT AGATG AGTGA TTTTGTTTGTATCAC TERM 1307 1342227 - 1342209 - R 100 -16 -4.72272 | opp_overlap 1342202 1342201 GCTTGCCATTAAAAA GGCCCACC TGA GGTGGGCC TTGGGGAATTTCTAC Shew_1166 1343425 - 1342277 - | iron-containing alcohol dehydrogenase TERM 1308 1343718 - 1343745 + H 85 -10 -4.25104 | gap 1, overlap 1343720 GTGCATCGAATTAGG TC-GTCTGCACAA TAT TTGTGCAGGCTGA TTTTCGTCAAACGCC TERM 1309 1343720 - 1343742 + H 86 -12.8 -3.13504 | overlap 1343718 GCATCGAATTAGGTC GTCTGCACAA TAT TTGTGCAGGC TGATTTTCGTCAAAC TERM 1310 1345474 - 1345456 - g 74 -12.4 -3.05384 | opp_overlap 1345464 TGGTGGCCGAGTGAA CCCCAGGA GGC TCCCGGGG CCTATGTGTACTACC TERM 1311 1346137 - 1346164 + G 71 -7.6 -4.08767 | AGCGAGCAATTTTGC CGGGCAGGCGAG CATC TTCGTCAGCCTG TTTTCAGCCGATGAC Shew_1167 1343941 - 1346178 + | 4-alpha-glucanotransferase Shew_1168 1346226 - 1348523 + | glycogen branching enzyme Shew_1169 1348514 - 1350715 + | glycogen debranching enzyme GlgX TERM 1312 1352065 - 1352081 + G 70 -12.3 -2.61264 | overlap 1352064 ATCCGCATGGCTTAC CTGGCGA TCG TCGCCAG CTTCTCGGTGAACGG Shew_1170 1350712 - 1353222 + | glycogen/starch/alpha-glucan phosphorylase TERM 1313 1353939 - 1353957 + G 86 -6 -5.06414 | opp_overlap 1353942 GGCGTCTATGGGTAA CTATGTGT TTA ACACAGAG TTTTTGTTCGAGCAG Shew_1171 1353301 - 1354575 + | glucose-1-phosphate adenylyltransferase Shew_1172 1354568 - 1356217 + | starch synthase Shew_1173 1356734 - 1356261 - | hypothetical protein TERM 1314 1357288 - 1357272 - g 75 -10.1 -3.85698 | TCGCCTGGGCATAAA CGCCAGT CGC ACCGGCG ATATGACGACGGCCG Shew_1174 1356928 - 1358523 + | sulfotransferase TERM 1315 1358636 - 1358613 - T 100 -12.4 -4.29738 | opp_overlap 1358614, overlap 1358614 GCAGACTCAGTAAAA GGGGCGACAC ATTT GTGTCGCCCT TTGTGGTATGACTGA TERM 1316 1358635 - 1358614 - T 100 -15.9 -3.17361 | opp_overlap 1358614, overlap 1358613 CAGACTCAGTAAAAG GGGCGACAC ATTT GTGTCGCCC TTTGTGGTATGACTG TERM 1317 1358614 - 1358635 + T 100 -15.9 -4.02334 | opp_overlap 1358614 1358613 CAGACTCAGTAAAAG GGGCGACAC ATTT GTGTCGCCC TTTGTGGTATGACTG Shew_1175 1359846 - 1358695 - | SecC motif-containing protein Shew_1176 1360942 - 1359863 - | SecC motif-containing protein TERM 1318 1360949 - 1360964 + H 72 -5.4 -4.50841 | TTGATGCAACAGCGC CACCTT CTGT AGGGTG TTTTGATATTGTTAT Shew_1177 1361267 - 1362520 + | RND family efflux transporter MFP subunit Shew_1178 1362520 - 1365648 + | acriflavin resistance protein TERM 1319 1366157 - 1366145 - f 87 -6.3 -5.28942 | CATCTTAAAGAAAAA GTGAA TAT TTCAC AGGCTTTGTTGATTA Shew_1179 1366677 - 1370291 + | type IV pilin biogenesis protein, putative TERM 1320 1370353 - 1370330 - f 71 -9.6 -3.12895 | gap 1, overlap 1370326 1370328 TCGTTGACTAATAGA GGCTGAGC-GC CTA GCTACTCAGCC AAAGAGTGAGAGGAA TERM 1321 1370556 - 1370534 - g 79 -4.1 -5.1523 | gap 1, opp_overlap 1370540 GCCACAATATAAAAA GCAGCTCGTC GGTA GTC-AGCTGC CCGCGTTACTGCACA Shew_1180 1370373 - 1370684 + | hypothetical protein TERM 1322 1370752 - 1370781 + T 86 -13.7 -2.70022 | opp_overlap 1370758, overlap 1370758 TATCGAGGCGTCATA AAAAAAGCCGGGT TATT ACCCGGCTTTTTA CTTCTATCAAGTGCG TERM 1323 1370758 - 1370775 + T 100 -12.7 -4.96646 | opp_overlap 1370758, overlap 1370752 GGCGTCATAAAAAAA GCCGGGT TATT ACCCGGC TTTTTACTTCTATCA TERM 1324 1370775 - 1370758 - T 100 -12.7 -5.60993 | opp_overlap 1370758 1370752 GGCGTCATAAAAAAA GCCGGGT TATT ACCCGGC TTTTTACTTCTATCA Shew_1181 1371939 - 1370809 - | PepSY-associated TM helix domain-containing protein TERM 1325 1371787 - 1371808 + g 71 -7.3 -4.09864 | gap 1 GGTGAAACTCAGGCG GGT-CTCGCT GGC GGCGAGCACC TTTTCCGGCATCAAT TERM 1326 1372211 - 1372227 + r 77 -2.3 -5.42862 | opp_overlap 1372211 AGGTTGTTGAGTTAA GTCTA TGTTTTT TAGAC TTTTTTTGACGCTGT TERM 1327 1372348 - 1372310 - R 93 -11.7 -3.74184 | opp_overlap 1372307 AAGCTAAGTTAAGAA GTCGCCTAGCTAGTCAA AGCTG TAGACTGGCTAGGCGGC GGATATCATAGCGGT Shew_1182 1373472 - 1372354 - | metallophosphoesterase TERM 1328 1373533 - 1373551 + r 70 -3 -4.93288 | GTTGTTGGCGGATAG GCGTTCAA TCC TAGCACGC TTTTGTTTCCGTGTT TERM 1329 1373633 - 1373616 - R 100 -12.7 -5.84432 | opp_overlap 1373616 GAGAAGATAAAAAAA CGGAGGC TGCT GCCTCCG TTTGTATGTGCTTTG TERM 1330 1373616 - 1373633 + r 100 -12.7 -4.19024 | opp_overlap 1373616 GAGAAGATAAAAAAA CGGAGGC TGCT GCCTCCG TTTGTATGTGCTTTG Shew_1183 1375350 - 1373686 - | putative ABC transporter ATP-binding protein TERM 1331 1376739 - 1376725 - g 71 -11.4 -3.10344 | CGGGCATGGAATATA CCAGCC TGG GGCTGG AGCTGGATGAAGATT Shew_1184 1375662 - 1377287 + | hypothetical protein TERM 1332 1377360 - 1377378 + F 93 -10.3 -5.11063 | opp_overlap 1377360 ATTACTAATGCAAAA TGACGGC CCAGT GCCGTCA TTTTTGTTGGGTAAT TERM 1333 1377378 - 1377360 - f 87 -10.3 -4.30416 | opp_overlap 1377360 ATTACTAATGCAAAA TGACGGC CCAGT GCCGTCA TTTTTGTTGGGTAAT TERM 1334 1377431 - 1377417 - f 72 -7.1 -4.07568 | opp_overlap 1377417 1377416 TGTTTTCGTTCAAAA GGCTG TAAAC CAGCC ATTTTGTCCCTTGCA glyA 1377630 - 1378883 + | serine hydroxymethyltransferase TERM 1335 1378913 - 1378945 + F 100 -15 -5.1104 | TCGGGTAAACTCCGA TGGCCGCTACTGAT TTAAT ATTGGTAGCGGCCA TTTTTGTATCTATTT TERM 1336 1379306 - 1379284 - g 72 -4 -4.73864 | CTAAGCAAGATAAAA TCGACCCTGA GAG CCACGGGCGA GCGTGAAGTGACCTC Shew_1186 1379008 - 1379481 + | transcriptional regulator NrdR Shew_1187 1379520 - 1380680 + | riboflavin biosynthesis protein RibD TERM 1337 1380955 - 1380944 - g 71 -7.2 -4.1466 | opp_overlap 1380949, overlap 1380945 AGTCAACCTGGAAAA GGCG GTGA CGCC GACGACCCGCCTCGG Shew_1188 1380687 - 1381352 + | riboflavin synthase subunit alpha Shew_1189 1381435 - 1382538 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 1338 1382624 - 1382634 + F 76 -8.2 -4.19336 | TACCGCCTCTTTTTT CCCG TGC CGGG TTTGTTAAGCTAATT Shew_1190 1382662 - 1383138 + | riboflavin synthase nusB 1383153 - 1383557 + | transcription antitermination protein NusB TERM 1339 1383567 - 1383584 + F 100 -9.1 -5.47159 | opp_overlap 1383567 AAGTGATACAATTAA CGGCGTC CCAG GATGCCG TTTTTTATATTCAGG TERM 1340 1384308 - 1384326 + G 75 -6 -4.54449 | overlap 1384301 GATTGGCCTCGAGCG CCATCG ATCTCTC CGATGG TTTTGTCTCGGATAT Shew_1192 1383674 - 1384645 + | thiamine-monophosphate kinase Shew_1193 1384648 - 1385142 + | phosphatidylglycerophosphatase Shew_1194 1385352 - 1385789 + | glutathione-dependent formaldehyde-activating, GFA TERM 1341 1385792 - 1385805 + T 73 -2.5 -5.09426 | opp_overlap 1385792 TCTACCGGAATAACA TTTTA GCGC TAAAA TTTTTTGGCGTTAGA TERM 1342 1385844 - 1385823 - T 72 -10.2 -2.87132 | opp_overlap 1385819 TTTTGGCGTTAGACA TCCCCTGA AGCCGG TCAGGGGA TGAGCTGTGATGAAG Shew_1195 1387086 - 1385881 - | hypothetical protein TERM 1343 1386760 - 1386774 + g 78 -6.4 -4.80882 | opp_overlap 1386755 AGTGGGAATACCCCA TTCGGG GCG CTCGAA TTTTTCATGTGCCGT TERM 1344 1387151 - 1387165 + r 74 -10 -3.17075 | TTATCAGAGTCTCTT CGCTGT GCA ACAGCG TTACATTGGCGGCGC TERM 1345 1387239 - 1387217 - R 89 -10.5 -4.58773 | opp_overlap 1387217 CTTATGAAATGAAAA GCGCGGCTA AAATA TTGCCGCGC TTGCTCTCGTTAATC TERM 1346 1387217 - 1387239 + r 76 -10.5 -3.33361 | opp_overlap 1387217 CTTATGAAATGAAAA GCGCGGCTA AAATA TTGCCGCGC TTGCTCTCGTTAATC Shew_1196 1388950 - 1387289 - | recombination and repair protein TERM 1347 1387556 - 1387601 + g 72 -9.7 -3.63991 | gap 1, opp_overlap 1387582 1387585 GGCGGTCGGGCCTGA GATCCCCACGTCGAC-CTCGTC GAA GATGAGGGTCGGGGTGGCGACC TTCTTGGCGGTGATC TERM 1348 1388422 - 1388438 + g 71 -6.5 -4.19704 | overlap 1388425 CATGTTGCGACTGCT GTAGCTG GCT CAGCTCC TTTTGGATCAGCTTA Shew_1197 1390069 - 1389101 - | auxin efflux carrier Shew_1198 1390361 - 1390167 - | hypothetical protein Shew_1199 1390967 - 1390365 - | hypothetical protein Shew_1200 1393761 - 1390960 - | hybrid sensory histidine kinase BarA rumA 1393859 - 1395193 + | 23S rRNA 5-methyluridine methyltransferase TERM 1349 1395690 - 1395660 - g 77 -11.9 -3.28712 | GCTGTTTGGCGACAA GCTCACCACGCTA GTGAA CAGCGTGGTGACC ATGGACGCCATTGGC Shew_1202 1395358 - 1397562 + | (p)ppGpp synthetase I, SpoT/RelA TERM 1350 1397648 - 1397629 - f 73 -9.2 -3.43604 | opp_overlap 1397631, overlap 1397631 AGATGATAAGAGTAA GAGGCGGC CCAG GCCGCCTT TTTGATGAGGTAAGC TERM 1351 1397646 - 1397631 - f 85 -11.8 -3.28173 | opp_overlap 1397631, overlap 1397629 ATGATAAGAGTAAGA GGCGGC CCAG GCCGCC TTTTTGATGAGGTAA TERM 1352 1397631 - 1397646 + F 100 -11.8 -4.7373 | opp_overlap 1397631 1397629 ATGATAAGAGTAAGA GGCGGC CCAG GCCGCC TTTTTGATGAGGTAA mazG 1397665 - 1398462 + | nucleoside triphosphate pyrophosphohydrolase Shew_1204 1398573 - 1400210 + | CTP synthetase TERM 1353 1400250 - 1400222 - f 71 -8.7 -3.50447 | opp_overlap 1400224, overlap 1400223 CTAATCTTTATACAA GGGCCGCTTCCGA CTC TCGGAGGCGGCTT TTTTGTTTCAGATGA TERM 1354 1400249 - 1400223 - f 79 -12.2 -2.69947 | opp_overlap 1400224, overlap 1400222 TAATCTTTATACAAG GGCCGCTTCCGA CTC TCGGAGGCGGCT TTTTTGTTTCAGATG TERM 1355 1400224 - 1400248 + F 100 -17.9 -5.64421 | opp_overlap 1400223 1400222 AATCTTTATACAAGG GCCGCTTCCGA CTC TCGGAGGCGGC TTTTTTGTTTCAGAT Shew_1205 1400342 - 1401637 + | phosphopyruvate hydratase TERM 1356 1401683 - 1401666 - f 100 -12.7 -4.11484 | opp_overlap 1401666 GTTAATTTGGTAAAA GGCCACC ACTT GGTGGCC TTTTTTGTTGTAATA TERM 1357 1401666 - 1401683 + F 100 -12.7 -5.58179 | opp_overlap 1401666 GTTAATTTGGTAAAA GGCCACC ACTT GGTGGCC TTTTTTGTTGTAATA Shew_1206 1401737 - 1402039 + | septum formation initiator Shew_1207 1402081 - 1402809 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Shew_1208 1402813 - 1403298 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 1358 1404162 - 1404193 + G 74 -12.9 -2.82623 | opp_overlap 1404180, overlap 1404160 TCTTGCCGGCCTCGA GCAGGCGGGGCTC AATCAG GAGCGCCGCCCGC TGCTTCTCGCGCCGC Shew_1209 1403308 - 1404375 + | pseudouridylate synthase TERM 1359 1404587 - 1404601 + G 70 -5.6 -4.38712 | overlap 1404580 ACCGATTGCGTGCAT CTGGCG ATT CGCGAG TTTTATGCCCATGAA Shew_1210 1404368 - 1405117 + | stationary-phase survival protein SurE Shew_1211 1405099 - 1405749 + | protein-L-isoaspartate O-methyltransferase TERM 1360 1405973 - 1405957 - g 78 -4.3 -4.89393 | overlap 1405958 GAAAGCCTATAAAAA GGGAGGC CTC ACCTCCG ACCACTACAAGGTCA Shew_1212 1405799 - 1406731 + | peptidase M23B Shew_1213 1406809 - 1407783 + | RpoD family RNA polymerase sigma factor TERM 1361 1407980 - 1407961 - T 100 -10 -5.68023 | gap 1, opp_overlap 1407961 CCAGAATTAAAAAAA GCGCATCCC AAA GGG-TGCGC TTTTTTGCTGTCTAG TERM 1362 1407961 - 1407980 + T 100 -11.4 -5.24989 | opp_overlap 1407961 CCAGAATTAAAAAAA GCGCATCC CAAA GGGTGCGC TTTTTTGCTGTCTAG Shew_1214 1410610 - 1408043 - | DNA mismatch repair protein recA 1410941 - 1412002 + | recombinase A TERM 1363 1412132 - 1412103 - g 83 -14.9 -3.05463 | opp_overlap 1412104 ATGTCGGCGATGCAA GTCGCGGTGGGCC TCCT GGCCCGCCGCGAT TATTCCCGCTATCAG TERM 1364 1412104 - 1412131 + G 100 -20.6 -3.64487 | opp_overlap 1412103 TGTCGGCGATGCAAG TCGCGGTGGGCC TCCT GGCCCGCCGCGA TTATTCCCGCTATCA Shew_1216 1412082 - 1412534 + | regulatory protein RecX TERM 1365 1412711 - 1412736 + F 72 -5.4 -4.58773 | CTGCTTATAATGCTG GGCTAACTGA GCATCG TCGGTGAGCC TTTTGCTTTCATCGC TERM 1366 1412963 - 1412946 - g 74 -10.5 -3.65812 | overlap 1412957 CCTTGGGGAAGACAA GCGCGAC TACA GCCGCGC CACTACGGCACAACG Shew_1217 1412779 - 1415403 + | alanyl-tRNA synthetase TERM 1367 1415444 - 1415416 - f 86 -13.3 -3.02461 | opp_overlap 1415423, overlap 1415423 TAAGTTGCCTCAATA GAAAAAAGCGCTC CAT GAGCGCTTTTTTT GTGCCATATTGATTG TERM 1368 1415437 - 1415423 - f 100 -11.4 -5.47159 | opp_overlap 1415423, overlap 1415416 CCTCAATAGAAAAAA GCGCTC CAT GAGCGC TTTTTTTGTGCCATA TERM 1369 1415423 - 1415437 + F 100 -11.4 -5.626 | opp_overlap 1415423 1415416 CCTCAATAGAAAAAA GCGCTC CAT GAGCGC TTTTTTTGTGCCATA Shew_1218 1415710 - 1415907 + | carbon storage regulator, CsrA TERM 1370 1415940 - 1415957 + F 100 -7.7 -5.93252 | opp_overlap 1415938 1415940 CGTTACACTATAAGA GTCAGCA AGTT TGCTGGC TTTTTTGTTTTTGGC TERM 1371 1416556 - 1416537 - f 73 -4.9 -4.7173 | opp_overlap 1416538, overlap 1416538 TACCATATTTAAAAA TCGACGG TTTTGG CCGTCGT TTTGTTTGAAAGCCT TERM 1372 1416555 - 1416538 - f 71 -8.4 -3.42315 | opp_overlap 1416538, overlap 1416537 ACCATATTTAAAAAT CGACGG TTTTGG CCGTCG TTTTGTTTGAAAGCC TERM 1373 1416538 - 1416555 + F 90 -9.1 -4.86731 | opp_overlap 1416538 1416537 ACCATATTTAAAAAT CGACGGT TTTG GCCGTCG TTTTGTTTGAAAGCC TERM 1374 1416785 - 1416766 - f 100 -13.6 -4.30576 | opp_overlap 1416766 CCGCCATTATTAAAA CCCGCAAC TTAG GTTGCGGG TTTTTTTATGCCTGT TERM 1375 1416766 - 1416785 + F 100 -13.6 -5.65177 | opp_overlap 1416766 CCGCCATTATTAAAA CCCGCAAC TTAG GTTGCGGG TTTTTTTATGCCTGT Shew_1219 1417286 - 1417534 + | sodium pump decarboxylases, gamma subunit Shew_1220 1417554 - 1419359 + | pyruvate carboxylase subunit B TERM 1376 1419809 - 1419826 + G 71 -11.3 -3.16564 | ATCATTGGCGGCGCC GATGGCC CGAC GGCCATC TTCCTCGCCTCCAAG Shew_1221 1419368 - 1420501 + | sodium ion-translocating decarboxylase, beta subunit TERM 1377 1420537 - 1420558 + F 100 -12.3 -5.81412 | opp_overlap 1420536 1420537 GTTGAACTGATGAAG CGGTCGACA CCTG TGTCGGCCG TTTTTTTTGACTAAG TERM 1378 1420558 - 1420537 - f 70 -10.1 -2.52933 | opp_overlap 1420537, overlap 1420536 GTTGAACTGATGAAG CGGTCGACA CCTG TGTCGGCCG TTTTTTTTGACTAAG Shew_1222 1420865 - 1421050 + | hypothetical protein Shew_1223 1421265 - 1421080 - | hypothetical protein TERM 1379 1421354 - 1421374 + r 87 -6.8 -5.24129 | opp_overlap 1421357, overlap 1421357 GCAATTAGCAATAAA AAAGCCGC ATTAA GCGGCTTC TTTTTTATCGGACGG TERM 1380 1421357 - 1421371 + r 89 -8.5 -4.72201 | opp_overlap 1421357, overlap 1421354 ATTAGCAATAAAAAA GCCGC ATTAA GCGGC TTCTTTTTTATCGGA TERM 1381 1421371 - 1421357 - R 100 -8.5 -5.52023 | opp_overlap 1421354 1421357 ATTAGCAATAAAAAA GCCGC ATTAA GCGGC TTCTTTTTTATCGGA Shew_1224 1422648 - 1421398 - | sodium:dicarboxylate symporter TERM 1382 1421775 - 1421803 + g 72 -9.6 -3.70307 | gap 1, overlap 1421773 CGTCCATATTCATGG TGGCGCC-TAGTG GCAA CACGAAGGCGCCA TATTTCTTCGATACG TERM 1383 1422755 - 1422779 + H 70 -10.1 -2.60244 | overlap 1422751 TTCAACCTTAGCGAG TGAGCCAGATA TTG TATCTGGCTGA TGCCTTGCTTACCAA TERM 1384 1422784 - 1422799 + H 71 -4 -4.80959 | overlap 1422786 1422792 TATCTGGCTGATGCC TTGCTT ACCA AAGCGA TTTTGTTATAACTTA TERM 1385 1422834 - 1422848 + H 77 -4.4 -5.10154 | GATATAAGAGTTTGT TTTAAT AAG ATTAAA TTTTTACTTTTAGGT Shew_1225 1422926 - 1423348 + | hypothetical protein Shew_1226 1423434 - 1426268 + | peptidase M16 domain-containing protein TERM 1386 1426295 - 1426329 + F 76 -4.2 -5.15969 | overlap 1426299 CGCCCCAATATAGGC CCTAGCGGTGAGCA TTAACTC TGCTCACCGCTTTA TTTTTTCCCTTGCCA TERM 1387 1426299 - 1426325 + F 100 -13.8 -5.08015 | overlap 1426295 CCAATATAGGCCCTA GCGGTGAGCA TTAACTC TGCTCACCGC TTTATTTTTTCCCTT Shew_1227 1426467 - 1428038 + | glutamate--cysteine ligase Shew_1228 1428041 - 1428481 + | hypothetical protein Shew_1229 1428580 - 1429197 + | hypothetical protein TERM 1388 1429638 - 1429622 - g 70 -10.1 -3.38072 | overlap 1429618 1429627 GGTATTCAATACGAA GCCAAGG TGA CCTCGGC GCACCGTACGCCTGC Shew_1230 1429520 - 1430029 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 1389 1430084 - 1430103 + F 100 -12.8 -5.74122 | TTCATCAGCCTGAGA CGCCGCCC GTTC GGGTGGCG TTTTTTTATCTCATC Shew_1231 1430464 - 1431057 + | ECF subfamily RNA polymerase sigma-24 factor Shew_1232 1431057 - 1431824 + | hypothetical protein TERM 1390 1431847 - 1431874 + T 77 -9.9 -3.61398 | opp_overlap 1431852, overlap 1431852 TGAAACAATAGCATT GAAAACGGGGC CTTAGT GCCCCGTTTTG TTATTCAAACCAAGA TERM 1391 1431869 - 1431852 - T 84 -9.8 -4.23723 | opp_overlap 1431847 1431852 CAATAGCATTGAAAA CGGGGC CTTAGT GCCCCG TTTTGTTATTCAAAC TERM 1392 1431852 - 1431869 + T 93 -9.8 -4.89477 | opp_overlap 1431852, overlap 1431847 CAATAGCATTGAAAA CGGGGC CTTAGT GCCCCG TTTTGTTATTCAAAC Shew_1233 1432366 - 1431875 - | hypothetical protein TERM 1393 1434242 - 1434202 - g 71 -4.6 -4.60255 | overlap 1434191 1434241 AGAAGCGGCTAAAAA GCCCGCTAAGACCCAG GTTCAGTGG CAGGGGCTCAGCAAGC GCCTGTGGCAGGTGC Shew_1234 1432466 - 1435780 + | peptidase S41 TERM 1394 1435818 - 1435859 + F 95 -10.8 -4.83169 | opp_overlap 1435805 1435838, overlap 1435819 AACCCAAACCATTTT AGGGGGTTACCGACCAAG CAGTTC CCAGGTCGGTAACCTCCA TTTTTATGGGCGGCT TERM 1395 1435819 - 1435858 + F 100 -14.3 -3.49419 | opp_overlap 1435805 1435838, overlap 1435818 ACCCAAACCATTTTA GGGGGTTACCGACCAAG CAGTTC CCAGGTCGGTAACCTCC ATTTTTATGGGCGGC TERM 1396 1435870 - 1435881 + F 95 -3.6 -5.69473 | CTCCATTTTTATGGG CGGC TGTT GCTG TTTTTTTCTGCTGTA TERM 1397 1436093 - 1436110 + G 75 -2.6 -5.09762 | TTCTGCACAGTTAGC CCATGC CGAGCA GCAGGG TTTTTCTGTTACCCT Shew_1235 1435986 - 1436885 + | hypothetical protein Shew_1236 1437471 - 1436953 - | OsmC family protein Shew_1237 1437841 - 1437563 - | hypothetical protein Shew_1238 1438314 - 1437952 - | hypothetical protein Shew_1239 1440023 - 1438311 - | PepSY-associated TM helix domain-containing protein Shew_1240 1440336 - 1440028 - | hypothetical protein Shew_1241 1440748 - 1441104 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 1398 1441147 - 1441131 - T 100 -13.7 -4.07107 | opp_overlap 1441131 ATAAGAGACGAGAAA GCCACCC TTA GGGTGGC TTTTTTGCATCTGGA TERM 1399 1441131 - 1441147 + T 100 -13.7 -5.1287 | opp_overlap 1441131 ATAAGAGACGAGAAA GCCACCC TTA GGGTGGC TTTTTTGCATCTGGA Shew_1242 1441730 - 1441257 - | hypothetical protein TERM 1400 1441766 - 1441783 + r 86 -12.7 -3.17075 | opp_overlap 1441766 GCTAAACAAAAAAAA GGGCGGA TAAT TCCGCCC TTAGATTGACAAGAA TERM 1401 1441783 - 1441766 - R 100 -12.7 -6.23545 | opp_overlap 1441766 GCTAAACAAAAAAAA GGGCGGA TAAT TCCGCCC TTAGATTGACAAGAA Shew_1243 1442898 - 1441813 - | peptidyl-Lys metalloendopeptidase Shew_1244 1443417 - 1443851 + | OsmC family protein Shew_1245 1444859 - 1443918 - | LysR family transcriptional regulator TERM 1402 1444917 - 1444896 - H 74 -3.9 -4.99035 | opp_overlap 1444898, overlap 1444898 TTATCTATATAAAAA CATAAAAAT ATCT ATTTTTATA TATAAATTGTTTTTG Shew_1246 1444998 - 1445246 + | hypothetical protein Shew_1247 1445248 - 1446180 + | hypothetical protein Shew_1248 1446190 - 1446672 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit Shew_1249 1446672 - 1447769 + | phosphoribosylaminoimidazole carboxylase, ATPase subunit TERM 1403 1447870 - 1447848 - T 100 -13.4 -4.04579 | opp_overlap 1447848 CCGATAAAGAGGAAA GCCCCGACAA GAC CTGCCGGGGC TTTTTTATCTTTGAT TERM 1404 1447848 - 1447870 + T 100 -10.5 -5.5762 | opp_overlap 1447848 CCGATAAAGAGGAAA GCCCCGACA AGACC TGCCGGGGC TTTTTTATCTTTGAT TERM 1405 1447941 - 1447975 + T 72 -8.5 -3.62591 | opp_overlap 1447942, overlap 1447942 CGATAGATACAAAAA AGCCGCTAAACCCCT CTGGT AAGGGCTTAGCGGCC TTTGAAGGTTATCGC TERM 1406 1447942 - 1447974 + T 79 -12 -2.77233 | opp_overlap 1447942, overlap 1447941 GATAGATACAAAAAA GCCGCTAAACCCCT CTGGT AAGGGCTTAGCGGC CTTTGAAGGTTATCG TERM 1407 1447974 - 1447942 - T 100 -16.4 -5.4492 | opp_overlap 1447942 1447941 GATAGATACAAAAAA GCCGCTAAACCCCT CTGGT AAGGGCTTAGCGGC CTTTGAAGGTTATCG Shew_1250 1448908 - 1448222 - | hypothetical protein TERM 1408 1450135 - 1450117 - g 81 -4.6 -5.011 | opp_overlap 1450116, overlap 1450118 ACCTAAACAACAAAA TGGAAAAT GAG ATTTTCCG ATCGTTTATCATTAA TERM 1409 1450347 - 1450335 - g 74 -3.4 -4.98531 | opp_overlap 1450335 GGCTCAAATGAAAAA GCAT ACAAA ATGC TAGCTTCACATGTGT Shew_1251 1449024 - 1450490 + | hypothetical protein TERM 1410 1450954 - 1450972 + G 75 -8.9 -4.12279 | TCTTGATGAACATCC TCGTACC TTAAT GGTACGA TTTGATTTGCATTTG Shew_1252 1450808 - 1451473 + | transposase TERM 1411 1451513 - 1451535 + T 81 -12 -3.12895 | opp_overlap 1451515, overlap 1451513 1451510 1451508 TAATTTGCGGTATAT CAGGGGCG TCTGTTT CGCCCCTG TATCTTGCTCGAACA Shew_1253 1452288 - 1451563 - | retinol acyltransferase domain-containing protein TERM 1412 1452338 - 1452308 - R 100 -10.5 -5.28942 | gap 1 TACTCCAAATAAAAA GAGAGCAGC-GCCC GTTA AGGCTACTGCTCTC AAGTGAGGGATTAGT Shew_1254 1452921 - 1452361 - | phage integrase family protein Shew_1255 1453435 - 1453031 - | hypothetical protein TERM 1413 1453483 - 1453458 - R 100 -14.1 -5.18355 | gap 1 TCCAAAAAGTAAAAA GCCCGTAG-GTC AAA GACGCTACGGGC AATGCCGGGTGATTC Shew_1256 1453877 - 1453515 - | hypothetical protein TERM 1414 1453918 - 1453896 - R 79 -6.9 -4.64861 | opp_overlap 1453896 1453898, overlap 1453898 GTTCTCCAAAATAAA CTGGCTGCC AGAAG AGCAGCCTG TTATGCCGTGATGAG Shew_1257 1454426 - 1453953 - | DNA repair protein RadC Shew_1258 1454598 - 1454783 + | phage transcriptional regulator, AlpA TERM 1415 1454970 - 1454938 - f 100 -20.8 -3.60792 | CCTCGAATCTCCAAA CCATGTTGGCAGGT GCATT ACCTGCCAACATGG GGGAACGAAATTTGA Shew_1259 1455068 - 1455226 + | phage transcriptional regulator, AlpA TERM 1416 1455483 - 1455469 - f 73 -10 -3.11316 | TCATGACCGAATAGA CCGTTG CGC CAACGG AACAAATGAAACAAT TERM 1417 1456534 - 1456521 - g 86 -2.4 -5.55698 | opp_overlap 1456521 GAGAACTTAAAAAAA GTTG ATAAAA CAAC ATATTGGTTTTCATT Shew_1260 1455597 - 1457756 + | DNA methylase N-4/N-6 domain-containing protein TERM 1418 1458366 - 1458353 - g 79 -2.3 -5.30616 | overlap 1458354 GCAGTTAAAGAAAAA GGCAC CATA GTGCA GCGCTTAATTAATGG Shew_1261 1457762 - 1460347 + | type III restriction enzyme, res subunit TERM 1419 1460518 - 1460498 - T 74 -9.7 -3.30439 | opp_overlap 1460493, overlap 1460493 AATATCTAAATCCAA TGTGCTGGA ATT TCCAGCTCA AAGCTCCCCGCAACA Shew_1262 1460853 - 1460488 - | hypothetical protein TERM 1420 1460563 - 1460541 - G 74 -12.1 -3.19175 | opp_overlap 1460541 CCGCAACATACTGAA GCATCGTGA TGATC TCACGATGC TTTTTTTCATCATAA TERM 1421 1460541 - 1460563 + g 100 -12.1 -5.55664 | opp_overlap 1460541 CCGCAACATACTGAA GCATCGTGA TGATC TCACGATGC TTTTTTTCATCATAA Shew_1263 1461001 - 1461984 + | hypothetical protein Shew_1264 1461981 - 1464017 + | UvrD/REP helicase Shew_1265 1464632 - 1464090 - | hypothetical protein Shew_1266 1464637 - 1465020 + | XRE family transcriptional regulator Shew_1267 1466788 - 1465559 - | phage integrase family protein TERM 1422 1465889 - 1465900 + g 72 -5.8 -4.4009 | TATGTAATCTCTGTG CCCA CTTA TGGG TTTTATCGCGTCAAG TERM 1423 1466733 - 1466744 + g 72 -2.2 -5.00138 | ACGATATCCTTCGGA CCAG GTTT TTGG TTTTTGATTTGAGTA TERM 1424 1466953 - 1466982 + r 76 -7.9 -4.23674 | opp_overlap 1466960, overlap 1466960 ATTTGCTTCAGGCAA GAAAAAAGACGTC CTGA GACGTCTTGATTC TTTGTGTTGGTGGAG TERM 1425 1466960 - 1466975 + r 75 -9 -3.68209 | opp_overlap 1466960, overlap 1466953 TCAGGCAAGAAAAAA GACGTC CTGA GACGTC TTGATTCTTTGTGTT TERM 1426 1466975 - 1466960 - R 100 -9 -5.4833 | opp_overlap 1466960 1466953 TCAGGCAAGAAAAAA GACGTC CTGA GACGTC TTGATTCTTTGTGTT TERM 1427 1467448 - 1467464 + r 71 -8 -3.84406 | opp_overlap 1467447 1467448 TTTATGCCAGACAAG TCGCTG AATCA CAGCGA TTATTATCGTGCGGC smpB 1467959 - 1467468 - | SsrA-binding protein Shew_1269 1468162 - 1468593 + | cyclase/dehydrase Shew_1270 1468622 - 1468954 + | hypothetical protein TERM 1428 1469082 - 1469106 + T 100 -15.1 -5.27779 | opp_overlap 1469082 GCTAGATAGTAAAAA GGGTCTTAAGC AAT GCTTAGGACCC TTTTTTCGTCTTAAA TERM 1429 1469106 - 1469082 - T 100 -12.9 -4.84527 | opp_overlap 1469082 GCTAGATAGTAAAAA GGGTCTTAAGC AAT GCTTAGGACCC TTTTTTCGTCTTAAA TERM 1430 1469152 - 1469179 + T 71 -8.6 -3.43049 | overlap 1469160 1469175 ACTGGCCTGGCGTTA GTTAAAGCGTTT ATTC AAACTCTTTAAC TTCGTTGAGTTCTTG Shew_1271 1469710 - 1469162 - | SmpA/OmlA domain-containing protein Shew_1272 1470059 - 1470868 + | uroporphyrin-III C/tetrapyrrole methyltransferase Shew_1273 1470952 - 1471173 + | hypothetical protein Shew_1274 1471188 - 1472969 + | diguanylate cyclase TERM 1431 1474042 - 1474054 + F 91 -6.3 -5.34555 | GTTCAAAATCTCTGT TTGGT CTT ACCAA TTTTTTGTGATGTAA Shew_1275 1474273 - 1475907 + | malate synthase TERM 1432 1475940 - 1475930 - f 70 -6.8 -4.14397 | ATTTTATAAATGAAA GGGT AAT ACCC AAACCTATTTAGCGC Shew_1276 1475987 - 1477339 + | isocitrate lyase TERM 1433 1477374 - 1477405 + F 100 -10.9 -5.41941 | TTAGCAGCGGTTGTT CCTCGCACTGTGT TCCTAC GTGCAGTGCGAGG TTTTTCTTTCCTTTC TERM 1434 1477445 - 1477465 + F 100 -6 -5.86976 | ATTTTTGCTTGCTTT GGCGGTCC CTCTT GAGCCGCC TTTTTTATTTTGTGC TERM 1435 1478243 - 1478259 + G 71 -6.5 -4.29432 | opp_overlap 1478245 AACAATGTGGTTAGA GAGGTTC TGG GCACCTC TTTTACTCAGCTTTC Shew_1277 1477688 - 1479136 + | putative signal transduction protein Shew_1278 1479612 - 1479139 - | hypothetical protein Shew_1279 1480460 - 1479636 - | hypothetical protein TERM 1436 1480486 - 1480466 - R 72 -3.3 -4.91109 | TGGCTAGCATAAAAA TCTCCCTAT GAT ATAGCAAGA TATGGTGTTGCTTGC TERM 1437 1480747 - 1480705 - R 79 -11.6 -3.05816 | opp_overlap 1480704 1480714 1480717, overlap 1480713 1480717 1480731 CTATCGCTTACTCAA TCGACTAATTTAGTCGACTA ACT TAATCAACTAATTTAATCGA CTATGATGGATTGTT Shew_1280 1481165 - 1480740 - | CopG family transcriptional regulator Shew_1281 1481868 - 1481125 - | hypothetical protein Shew_1282 1482486 - 1482710 + | hypothetical protein TERM 1438 1483004 - 1482982 - g 71 -7.6 -4.04806 | GTTCAGATCAAAGAA GCCGACAAGA CCT TCTGGGCGGC CGGACCTCAGGCAGA Shew_1283 1482838 - 1483140 + | NrfJ-related protein TERM 1439 1483219 - 1483188 - f 71 -8.8 -3.50303 | opp_overlap 1483190, overlap 1483186 1483190 GAGCTAAACATAATA GATAGTGCCGCTAA CTTG TTATCGGCACTATT TTTTTGCCCGATGGA TERM 1440 1483190 - 1483217 + F 100 -11.4 -5.41143 | opp_overlap 1483190 1483188 1483186 GCTAAACATAATAGA TAGTGCCGCTAA CTTG TTATCGGCACTA TTTTTTTGCCCGATG TERM 1441 1483217 - 1483190 - f 83 -11.4 -3.31428 | opp_overlap 1483190, overlap 1483188 1483186 GCTAAACATAATAGA TAGTGCCGCTAA CTTG TTATCGGCACTA TTTTTTTGCCCGATG Shew_1284 1483404 - 1483904 + | GCN5-related N-acetyltransferase Shew_1285 1485806 - 1484046 - | 5'-nucleotidase TERM 1442 1485878 - 1485861 - R 100 -11.3 -4.98531 | opp_overlap 1485861 1485852 GGGGTAAATGAAAAA GGGAAGC ATTC GCTTCCC TTTGTTAACTTTTCT TERM 1443 1485861 - 1485878 + r 93 -11.3 -4.3351 | opp_overlap 1485861, overlap 1485852 GGGGTAAATGAAAAA GGGAAGC ATTC GCTTCCC TTTGTTAACTTTTCT Shew_1286 1487081 - 1485948 - | hypothetical protein TERM 1444 1487193 - 1487203 + H 74 -6.8 -4.43012 | overlap 1487187 1487189 TGTATAATTCGCCGC CCTG TGG CAGG TTTTGGTGTTGAGGT Shew_1287 1487227 - 1488348 + | hypothetical protein TERM 1445 1488406 - 1488395 - g 72 -2.2 -4.87893 | overlap 1488403 AATGTTAAGCAAAAA GCCA ACAT TGAC CCTGTTAGTCATCCT Shew_1288 1488381 - 1489169 + | type IV pilus biogenesis/stability protein PilW Shew_1289 1489169 - 1490179 + | hypothetical protein ispG 1490199 - 1491314 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 1446 1491338 - 1491354 + F 80 -10.1 -3.86015 | opp_overlap 1491338 1491336 1491339, overlap 1491339 TTGCTGCGCAGAAGA TGGGGCT TTT AGCCCCG TTTGTGGCGCAGCTC TERM 1447 1491339 - 1491353 + F 78 -11.4 -2.91395 | opp_overlap 1491338 1491336 1491339, overlap 1491338 TGCTGCGCAGAAGAT GGGGCT TTT AGCCCC GTTTGTGGCGCAGCT TERM 1448 1491353 - 1491339 - f 77 -11.4 -2.52623 | opp_overlap 1491339 1491338, overlap 1491338 1491336 TGCTGCGCAGAAGAT GGGGCT TTT AGCCCC GTTTGTGGCGCAGCT TERM 1449 1491371 - 1491387 + F 93 -11.5 -4.43755 | overlap 1491362 TTGTGGCGCAGCTCA CTGGCGC GCC GCGCCGG TTTTGCGTTTATTGT TERM 1450 1491407 - 1491426 + F 100 -6.4 -6.04324 | opp_overlap 1491417 GCGTTTATTGTTGAT GCGCCT ATAATGCG AGGCGC TTTTTTATTTTTTAC Shew_1291 1491468 - 1492739 + | histidyl-tRNA synthetase Shew_1292 1492754 - 1493377 + | tetratricopeptide TPR_4 Shew_1293 1493389 - 1494576 + | outer membrane protein assembly complex subunit YfgL TERM 1451 1494600 - 1494623 + F 91 -7.4 -5.28942 | gap 1, opp_overlap 1494600 1494601 TTAACAGTTTTTAAA GCCCCTGG-AC CTT GTGCTGGGGGC TTTTTATTTAAGATA engA 1494671 - 1496140 + | GTP-binding protein EngA TERM 1452 1496156 - 1496186 + F 91 -11.3 -3.78679 | opp_overlap 1496162, overlap 1496162 CTTTCTCTGTCTCAC TAAAAAGGTCAGC CTAGT GCTGGCCTTTTTG TTATCTTGGTGTTTT TERM 1453 1496162 - 1496180 + F 91 -8.1 -5.29716 | opp_overlap 1496162, overlap 1496156 CTGTCTCACTAAAAA GGTCAGC CTAGT GCTGGCC TTTTTGTTATCTTGG TERM 1454 1496180 - 1496162 - f 74 -5.9 -4.72272 | opp_overlap 1496162 1496156 CTGTCTCACTAAAAA GGTCAGC CTAGT GCTGGCC TTTTTGTTATCTTGG Shew_1295 1496331 - 1496864 + | hypothetical protein TERM 1455 1497065 - 1497078 + T 100 -9.5 -5.60993 | opp_overlap 1497065 AGGTTTTCTATTTAA CGCCC GCCA GGGCG TTTTTTTGTCGAAGG TERM 1456 1497078 - 1497065 - T 71 -9.5 -3.05463 | opp_overlap 1497065 AGGTTTTCTATTTAA CGCCC GCCA GGGCG TTTTTTTGTCGAAGG xseA 1498424 - 1497096 - | exodeoxyribonuclease VII large subunit Shew_1297 1498544 - 1500010 + | inositol-5-monophosphate dehydrogenase TERM 1457 1500023 - 1500049 + F 90 -8.9 -4.63218 | gap 1, opp_overlap 1500023 1500020 TAATTATTGAAATCA GGCAGTGTCATT GAAA AAT-ACACTGCC TTTTCTTAAGCCGGG guaA 1500113 - 1501690 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1458 1501724 - 1501741 + F 100 -9.9 -5.65927 | opp_overlap 1501723 1501722 TGAAAGATAGAAAGG GGGCATA GTGA TATGCCC TTTTTTATTTGAGTG Shew_1299 1501837 - 1502373 + | CMP/dCMP deaminase, zinc-binding TERM 1459 1502380 - 1502362 - T 100 -10.3 -5.94713 | opp_overlap 1502362 ATGGCAGAAAAAAAA CAAGGGC AATAG GCCCTTG TTTTTTATGCGTTGT TERM 1460 1502362 - 1502380 + T 100 -10.3 -5.3236 | opp_overlap 1502362 ATGGCAGAAAAAAAA CAAGGGC AATAG GCCCTTG TTTTTTATGCGTTGT Shew_1300 1504037 - 1502607 - | lytic transglycosylase, catalytic TERM 1461 1503293 - 1503310 + g 86 -5.5 -5.1861 | gap 1 ATTTTTCGTTCAGGT GGGCCAGG GTG CC-GGCTC TTTTTTCCTGATGCC TERM 1462 1504187 - 1504209 + H 80 -8.4 -4.20516 | opp_overlap 1504190, overlap 1504191 1504192 TTAAGTATGGGGCAT GAATTTGGCG CCG CGCCAGTTTC TTTGTTACGTAAAGC TERM 1463 1504191 - 1504205 + H 85 -7.8 -4.69214 | opp_overlap 1504190, overlap 1504187 1504192 GTATGGGGCATGAAT TTGGCG CCG CGCCAG TTTCTTTGTTACGTA TERM 1464 1504192 - 1504204 + H 71 -9.1 -3.40444 | opp_overlap 1504190, overlap 1504191 1504187 TATGGGGCATGAATT TGGCG CCG CGCCA GTTTCTTTGTTACGT TERM 1465 1506227 - 1506216 - g 71 -7.2 -4.07568 | CGTGGTGTCGCAAAA GGCG GACT CGCC TGCGCTGGCACAAGA TERM 1466 1506283 - 1506259 - g 72 -9.9 -3.62418 | ACAATTGAGCTCAAA GACGCGGTGCG CCG CGTACTGCGTC TGCCAACCGTTGCCG Shew_1301 1504363 - 1508244 + | phosphoribosylformylglycinamidine synthase TERM 1467 1508297 - 1508276 - f 100 -15.9 -4.68424 | opp_overlap 1508276 TAATTGATGCAAAAA GGGCCTCGA AAAT TCGAGGCCC TTTTTTTATACCCAT TERM 1468 1508276 - 1508297 + F 100 -15.9 -5.61596 | opp_overlap 1508276 TAATTGATGCAAAAA GGGCCTCGA AAAT TCGAGGCCC TTTTTTTATACCCAT TERM 1469 1508539 - 1508569 + F 71 -9.7 -3.08046 | opp_overlap 1508540, overlap 1508538 CGTTAGAAAGTAAAA AGCCACCGTCTTC GAGGA GAAAACGGTGGCC GTTTTGCGCTAACAA TERM 1470 1508568 - 1508540 - f 100 -15.4 -5.04601 | opp_overlap 1508539 1508538 GTTAGAAAGTAAAAA GCCACCGTCTTC GAGGA GAAAACGGTGGC CGTTTTGCGCTAACA TERM 1471 1509304 - 1509279 - f 73 -4.7 -4.77757 | overlap 1509274 1509281 GTTTAAAAACCAAAA GGTTTTGTGAG CCGC CTCTCAAAAAC TGGGGTGAGAGGGCC TERM 1472 1510053 - 1510083 + G 83 -9.7 -4.31433 | gap 1, overlap 1510068 1510070 GAAGTTTGTTCATAC CGTGGCGTCTGGCT ATGT GGCCGG-CGCCATG TTTGTTCTGGCCATC Shew_1302 1509487 - 1511043 + | cytochrome bd ubiquinol oxidase, subunit I Shew_1303 1511059 - 1512198 + | cytochrome d ubiquinol oxidase, subunit II Shew_1304 1512213 - 1512329 + | cyd operon protein YbgT TERM 1473 1512374 - 1512355 - f 71 -7.8 -3.73647 | opp_overlap 1512355 TCGATTGATGAATAA CCCCGTAT GAGA ATGCGGGG TTTTTTATTGCTCGT TERM 1474 1512355 - 1512374 + F 100 -10 -5.52023 | opp_overlap 1512355 TCGATTGATGAATAA CCCCGTAT GAGA ATGCGGGG TTTTTTATTGCTCGT TERM 1475 1512465 - 1512481 + F 70 -9.5 -2.87725 | overlap 1512464 1512462 TATTTGTTAGGGGAT TGAAGGT CGT ACCTTCA CTGTTATTTTTCGCC Shew_1305 1512902 - 1513342 + | HNH endonuclease TERM 1476 1513741 - 1513752 + F 82 -7.2 -4.60487 | opp_overlap 1513741, overlap 1513732 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTA TERM 1477 1513752 - 1513741 - f 72 -7.2 -4.09511 | opp_overlap 1513741 1513732 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTA TERM 1478 1514596 - 1514609 + G 75 -2.3 -5.05601 | CGTTCCTGTTAGTGT TGGCG AGAT CGCAA TTTTTGTATCTAATG Shew_1306 1513910 - 1514731 + | CMP/dCMP deaminase, zinc-binding Shew_1307 1514848 - 1516023 + | hypothetical protein Shew_1308 1516150 - 1517382 + | hypothetical protein TERM 1479 1518509 - 1518480 - T 83 -12.3 -3.10245 | opp_overlap 1518487, overlap 1518487 TGAGCCTAACAGACA TAAAAAAGCCGCT TGAT AGCGGCTTTTTTC GTTGAGATGAGCGGA TERM 1480 1518502 - 1518487 - T 100 -10.4 -5.46276 | opp_overlap 1518487, overlap 1518480 AACAGACATAAAAAA GCCGCT TGAT AGCGGC TTTTTTCGTTGAGAT TERM 1481 1518487 - 1518502 + T 100 -10.4 -5.27477 | opp_overlap 1518487 1518480 AACAGACATAAAAAA GCCGCT TGAT AGCGGC TTTTTTCGTTGAGAT Shew_1310 1520538 - 1518535 - | methyl-accepting chemotaxis sensory transducer TERM 1482 1520080 - 1520103 + g 78 -4.4 -5.00884 | overlap 1520078 1520077 CTTACCCAGGTAGGT GCCCAGGGCG CGTT TGCCGTCGGC TTTTTTCAGCGAGGT TERM 1483 1520510 - 1520524 + g 76 -3.5 -5.00765 | overlap 1520511 AGTGCGCCTATCTGT TTGGC GATAG GCCAG TTTTTATAGTTCATT TERM 1484 1520698 - 1520660 - R 77 -9.6 -3.63895 | opp_overlap 1520660 1520662, overlap 1520662 GGCAATTAGTCTAAA TATGCACTGGATCACC TTGGGCG GGCGAGCCAGTGCATC TTGTGATTAGCAAAT TERM 1485 1520662 - 1520696 + r 80 -10.7 -3.32946 | opp_overlap 1520660 1520662, overlap 1520660 CAATTAGTCTAAATA TGCACTGGATCACCT TGGGC GGGCGAGCCAGTGCA TCTTGTGATTAGCAA TERM 1486 1520696 - 1520662 - R 85 -12.2 -3.39732 | opp_overlap 1520662 1520660, overlap 1520660 CAATTAGTCTAAATA TGCACTGGATCACC TTGGGCG GGCGAGCCAGTGCA TCTTGTGATTAGCAA Shew_1311 1523808 - 1520737 - | acriflavin resistance protein Shew_1312 1524927 - 1523812 - | RND family efflux transporter MFP subunit TERM 1487 1524973 - 1525018 + H 74 -7.7 -4.14392 | opp_overlap 1524973 1524974 1525001, overlap 1524969 1524988 GAATAAATCGTTAAA CTAGACTTGTTAGTCTAATTT GCAA AAACTGGACTGTCTAGTCTAG TTTGTGTATAAATAT Shew_1313 1525070 - 1525681 + | TetR family transcriptional regulator Shew_1314 1525895 - 1526809 + | hypothetical protein TERM 1488 1526867 - 1526890 + T 100 -8.2 -5.77632 | opp_overlap 1526867 TGATGAACACAAAAA TGGCCTGA ACATACCG TCAGGCCA TTTTTTTATGATTTT TERM 1489 1526890 - 1526867 - T 87 -8.2 -5.1244 | gap 1, opp_overlap 1526867 TGATGAACACAAAAA TGGCCTGAACA TAC CGT-CAGGCCA TTTTTTTATGATTTT Shew_1315 1527521 - 1526949 - | hypothetical protein Shew_1316 1528033 - 1527554 - | hypothetical protein TERM 1490 1528134 - 1528102 - R 100 -19.1 -3.82484 | ACAGGACAAGGGAAA CGGCGCCGCGGGATA ATT TAGCCCCCGGCGCCG AAAAAACTTAGGGCC TERM 1491 1528163 - 1528141 - R 70 -2.6 -5.00616 | opp_overlap 1528148, overlap 1528145 CCGGCGCCGAAAAAA CTTAGGGC CTGAGCT GCCCCAGG TAGTTGAGCGCCGCC Shew_1317 1530622 - 1528142 - | TPR repeat-containing protein TERM 1492 1528865 - 1528900 + g 72 -2.1 -4.87626 | gap 3, overlap 1528862 1528865 1528866 1528868 CTGCATATCATTGTG CCA--TTGCTGACATAAG GCA CTTATGTC-GCAGTCTGG TTTTTCCTCTTCGAG TERM 1493 1529947 - 1529969 + g 74 -7 -4.45945 | CGACTCGCGATGCGG CGATGATGAC TAG GTCGTCGTTG TTTTGCTTAATCCAT TERM 1494 1531569 - 1531583 + G 88 -4.2 -5.41746 | overlap 1531565 TGTAGTCGGCTCGCG GGGATC TGT GGTTCC TTTTTTTCAGAAGTT Shew_1318 1531054 - 1532052 + | polysaccharide biosynthesis protein CapD Shew_1319 1532052 - 1533218 + | DegT/DnrJ/EryC1/StrS aminotransferase Shew_1320 1534407 - 1533202 - | methyltransferase type 12 Shew_1321 1535598 - 1534408 - | methyltransferase type 12 TERM 1495 1534807 - 1534790 - G 72 -6.3 -4.49556 | GCGGCATTAAATAAA GAAGGAA CCTG TTCCTCC AATGACGCGTTATGA Shew_1322 1536337 - 1535609 - | short-chain dehydrogenase/reductase SDR Shew_1323 1537479 - 1536337 - | acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein Shew_1324 1537724 - 1537479 - | hypothetical protein Shew_1325 1538287 - 1537721 - | acetyltransferase-like protein Shew_1326 1539058 - 1538297 - | short-chain dehydrogenase/reductase SDR Shew_1327 1539310 - 1539077 - | hypothetical protein Shew_1328 1540132 - 1539395 - | acylneuraminate cytidylyltransferase Shew_1329 1541209 - 1540133 - | N-acylneuraminate-9-phosphate synthase Shew_1330 1542320 - 1541211 - | Rieske (2Fe-2S) domain-containing protein Shew_1331 1543387 - 1542317 - | spore coat polysaccharide biosynthesis protein glycosyltransferase-like Shew_1332 1544117 - 1543365 - | short-chain dehydrogenase/reductase SDR TERM 1496 1543454 - 1543440 - G 77 -2.8 -5.06816 | ATCGCTTAATAAAAA GTAAAC ACT GTTTGC GACATCTTCTGGTGT Shew_1333 1545208 - 1544117 - | 3-oxoacyl-(acyl-carrier-protein) synthase TERM 1497 1544358 - 1544368 + g 71 -6.8 -4.2123 | AAGTATTTTTCTTCG GCCA CTT TGGC TTTCTTACGTAGATG Shew_1334 1545341 - 1546363 + | 3-oxoacyl-(acyl-carrier-protein) synthase Shew_1335 1546609 - 1546346 - | hypothetical protein Shew_1336 1547901 - 1546606 - | hypothetical protein TERM 1498 1546758 - 1546773 + g 81 -3.3 -5.27923 | CACGTTTGCCATGGC CATTG AGAACC CAATG TTTTTTCTGCAATTG TERM 1499 1546815 - 1546829 + g 74 -2.8 -4.90079 | CTAACATGCCGTCTT CCCA ATGGGCG TGGG TTTTATTATTGGGGT TERM 1500 1548082 - 1548103 + r 71 -8.9 -3.39521 | overlap 1548095 CTTTAGATTTAGTTG CTTAATTAG TGCA CTAATTAAG TTAGATTTTAATCGC Shew_1337 1549264 - 1548104 - | hypothetical protein TERM 1501 1549111 - 1549139 + g 70 -10.3 -3.21924 | opp_overlap 1549110 1549111 1549114, overlap 1549110 CACCCGATTGCAAAG TGACATAGCTCAG CGC CTGCGCTATGGCA TCTTCTCGCGCCTGG Shew_1338 1549666 - 1550292 + | hypothetical protein Shew_1339 1550289 - 1550735 + | hypothetical protein TERM 1502 1550776 - 1550747 - T 100 -13.1 -3.73224 | opp_overlap 1550754, overlap 1550754 CTAGGTGTCAGCAAA CAAAAAAGCCTCT ATTA AGAGGCTTTTTTA ATGTCTTCAGCTTGA TERM 1503 1550754 - 1550769 + T 100 -9 -5.27399 | opp_overlap 1550747 1550754 TCAGCAAACAAAAAA GCCTCT ATTA AGAGGC TTTTTTAATGTCTTC TERM 1504 1550769 - 1550754 - T 100 -9 -5.68438 | opp_overlap 1550754, overlap 1550747 TCAGCAAACAAAAAA GCCTCT ATTA AGAGGC TTTTTTAATGTCTTC Shew_1340 1551239 - 1550814 - | FlgN family protein Shew_1341 1551567 - 1551250 - | anti-sigma-28 factor, FlgM TERM 1505 1551469 - 1551486 + g 74 -4.8 -4.72272 | overlap 1551464 CTGCGCTGGTGCGCT GGTGGC CGCAGT GCTACC TTTTTGCTGCGAGGC flgA 1552395 - 1551688 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 1506 1552452 - 1552462 + H 74 -2.4 -5.24531 | TCGTTTTAAGAGCCA AGGC TTT GCCA TTTTTTGTGAGAAAT Shew_1343 1552605 - 1553525 + | response regulator receiver modulated CheW protein TERM 1507 1553547 - 1553569 + F 77 -10 -3.52668 | overlap 1553537 CTAAGTTGGGCCTGA GCCTAAATTT GGT AAGTTTAGGC TTGTATCAGTGAGTT Shew_1344 1553669 - 1554502 + | MCP methyltransferase, CheR-type TERM 1508 1554578 - 1554561 - f 87 -11.3 -3.62478 | opp_overlap 1554561 1554570 CAATCAAGTTTCAAA TGCCAGC AGTC GCTGGCA TTTTTTATGCCTGCC TERM 1509 1554561 - 1554578 + F 100 -11.3 -5.28176 | opp_overlap 1554561, overlap 1554570 CAATCAAGTTTCAAA TGCCAGC AGTC GCTGGCA TTTTTTATGCCTGCC flgB 1554691 - 1555089 + | flagellar basal body rod protein FlgB flgC 1555092 - 1555511 + | flagellar basal body rod protein FlgC flgD 1555522 - 1556304 + | flagellar basal body rod modification protein flgE 1556368 - 1557729 + | flagellar hook protein FlgE TERM 1510 1557748 - 1557785 + F 89 -12.2 -3.67498 | gap 1, opp_overlap 1557756, overlap 1557756 1557768 GCCGCTTAGTGGGAC GAGTGAAATGTGTTGCC CAGGC GGCAACACATTTC-CGC TTCTCTTGCCGCTTC TERM 1511 1557756 - 1557778 + F 93 -12.1 -3.71883 | opp_overlap 1557756, overlap 1557748 1557768 GTGGGACGAGTGAAA TGTGTTGCC CAGGC GGCAACACA TTTCCGCTTCTCTTG TERM 1512 1557778 - 1557756 - f 89 -12.1 -3.68351 | opp_overlap 1557756 1557748 1557768 GTGGGACGAGTGAAA TGTGTTGCC CAGGC GGCAACACA TTTCCGCTTCTCTTG flgF 1557929 - 1558672 + | flagellar basal body rod protein FlgF flgG 1558683 - 1559471 + | flagellar basal body rod protein FlgG flgH 1559481 - 1560185 + | flagellar basal body L-ring protein TERM 1513 1560717 - 1560727 + G 74 -6.8 -4.37092 | TCGTCGAGCGCACCG TGGC GAC GCCA TTTTCTACCGGCGAT TERM 1514 1560757 - 1560771 + G 73 -5.6 -4.57569 | TCATCTGACCTTTAA TCTGCG CCG CGCCGA TTTTTCGACGGCTAA flgI 1560197 - 1561288 + | flagellar basal body P-ring protein flgJ 1561336 - 1562361 + | peptidoglycan hydrolase TERM 1515 1563606 - 1563561 - g 74 -7.8 -4.31293 | gap 3 TTAGAGATCAAGAAA CCGG-CACCGTGAC-GCCACTTA CCT TAAATGGCAGTCA-GCTGACCGG TGGCGACGGCTTTAG Shew_1354 1562426 - 1564342 + | flagellar hook-associated protein FlgK TERM 1516 1565515 - 1565527 + G 74 -3.3 -4.9755 | opp_overlap 1565512, overlap 1565512 GTGTTTAGCAAAGTC GGGTC GAC GACAC TTTTTGATTATATCT flgL 1564354 - 1565544 + | flagellar hook-associated protein FlgL Shew_1356 1565632 - 1566453 + | flagellin domain-containing protein TERM 1517 1566509 - 1566475 - f 76 -10.2 -3.28791 | opp_overlap 1566480, overlap 1566480 AGTTTTGGCCCACAA TAAAACGGTGCAAA TTAGTTT TTTGCACCGTTTTT TTCGTCTCTGCGTGA TERM 1518 1566504 - 1566480 - f 91 -10.1 -4.77165 | opp_overlap 1566480, overlap 1566475 TGGCCCACAATAAAA CGGTGCAAA TTAGTTT TTTGCACCG TTTTTTTCGTCTCTG TERM 1519 1566480 - 1566504 + F 100 -10.1 -5.60864 | opp_overlap 1566480 1566475 TGGCCCACAATAAAA CGGTGCAAA TTAGTTT TTTGCACCG TTTTTTTCGTCTCTG TERM 1520 1566754 - 1566740 - g 84 -5 -5.07941 | AAAAGCACAGAAAAA CCTAAA CGC TTCAGG TAGCAACTTAGCGAC Shew_1357 1566690 - 1567508 + | flagellin domain-containing protein TERM 1521 1567545 - 1567568 + F 86 -11 -3.93057 | opp_overlap 1567545, overlap 1567536 GTTTGATGAAGACAA GGGAGGTTCG GCGA CGGATCTCCC TTTCGTGATTTTAAG Shew_1358 1567613 - 1568002 + | flagellar protein FlaG protein Shew_1359 1568033 - 1569406 + | flagellar hook-associated 2 domain-containing protein Shew_1360 1569434 - 1569754 + | hypothetical protein fliS 1569761 - 1570171 + | flagellar protein FliS TERM 1522 1570207 - 1570232 + F 87 -14.1 -2.8007 | overlap 1570204 AACAACAACTTTTTG TCAGGCGTCAA ACGA TTGGCGCCTGA TGCTTGATACGTTGA Shew_1362 1570438 - 1571871 + | sigma-54 dependent trancsriptional regulator TERM 1523 1571896 - 1571919 + F 85 -13.2 -2.70528 | opp_overlap 1571896 1571899, overlap 1571900 GCCGCACTCCATAAA CAAGGGCCCA TTTC TGGGCCTTTG TCGTATCTGACTCAT TERM 1524 1571919 - 1571896 - f 86 -11 -3.89346 | opp_overlap 1571896 1571900, overlap 1571899 GCCGCACTCCATAAA CAAGGGCCCA TTTC TGGGCCTTTG TCGTATCTGACTCAT TERM 1525 1571916 - 1571899 - f 70 -6.9 -4.07877 | opp_overlap 1571896 1571900, overlap 1571896 GCACTCCATAAACAA GGGCCCA TTTC TGGGCCT TTGTCGTATCTGACT TERM 1526 1571900 - 1571915 + F 82 -10.4 -4.04318 | opp_overlap 1571899 1571896, overlap 1571896 CACTCCATAAACAAG GGCCCA TTTC TGGGCC TTTGTCGTATCTGAC Shew_1363 1572027 - 1573115 + | PAS/PAC sensor signal transduction histidine kinase Shew_1364 1573108 - 1574451 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1527 1574539 - 1574565 + F 95 -8.1 -5.36364 | gap 2 TTTGAACGTTTCGAA GCCGAC--ACCCA ATC TGGGTTTGTCGGC TTTTTCTATTTTTGG Shew_1365 1574648 - 1574980 + | flagellar hook-basal body complex subunit FliE fliF 1575039 - 1576736 + | flagellar MS-ring protein TERM 1528 1577452 - 1577472 + G 73 -8.3 -4.1891 | overlap 1577455 GACGAAGAGATGGCG CAGCAGATC CAA GATCTGATG TTTGTCTTCGAAAAC fliG 1576729 - 1577772 + | flagellar motor switch protein G Shew_1368 1577772 - 1578791 + | flagellar assembly protein FliH TERM 1529 1579411 - 1579463 + GF 71 -9.5 -3.03771 | TTGGGCGCCGAGGGA CGTTCCCGCAGCGTGGTGGTGGCGG CGC CCGCCGATACCTCGCCGCTGATGCG TCTTCGAGCCTGTGA fliI 1578763 - 1580103 + | flagellum-specific ATP synthase Shew_1370 1580133 - 1580579 + | flagellar export protein FliJ TERM 1530 1581301 - 1581317 + G 71 -7.9 -4.07885 | overlap 1581304 GGATGAGGCGGAATT TGCCGCC GAC GGCGTCA TTTTGCCGCCGGGTG Shew_1371 1580960 - 1582666 + | flagellar hook-length control protein fliL 1582766 - 1583287 + | flagellar basal body-associated protein FliL TERM 1531 1583713 - 1583724 + G 71 -7.2 -4.07687 | overlap 1583711 GGATAACTTCTTCGG CGGC GACG GCCG TTTTCACGCCAAGAT fliM 1583330 - 1584355 + | flagellar motor switch protein FliM fliN 1584381 - 1584764 + | flagellar motor switch protein TERM 1532 1585034 - 1585059 + G 77 -10.4 -3.81339 | opp_overlap 1585034 1585032 CGATGGCCAACAATA CCTGCTGGGG GTTACG CCGCAGCAGG TTTCGCTTATCGATA TERM 1533 1585059 - 1585034 - g 72 -10.4 -3.39784 | opp_overlap 1585034, overlap 1585032 CGATGGCCAACAATA CCTGCTGGGG GTTACG CCGCAGCAGG TTTCGCTTATCGATA Shew_1375 1584774 - 1585151 + | flagellar biosynthesis protein, FliO fliP 1585148 - 1585915 + | flagellar biosynthesis protein FliP Shew_1377 1585924 - 1586193 + | flagellar biosynthetic protein FliQ fliR 1586236 - 1587033 + | flagellar biosynthesis protein FliR flhB 1587033 - 1588166 + | flagellar biosynthesis protein FlhB TERM 1534 1588364 - 1588352 - g 73 -5.5 -4.52589 | CTCGGTCAGATAAAA CAGGT AAA ACCCG CCAATTTTAAAGGGA TERM 1535 1588948 - 1588934 - g 79 -10 -4.11484 | opp_overlap 1588932 TCCAAGTTTGTAAAA GGCGAT GCC ATCGCC GGTATCATGATTCTG flhA 1588319 - 1590418 + | flagellar biosynthesis protein FlhA flhF 1590430 - 1591854 + | flagellar biosynthesis regulator FlhF Shew_1382 1591829 - 1592740 + | cobyrinic acid a,c-diamide synthase fliA 1592733 - 1593452 + | flagellar biosynthesis sigma factor TERM 1536 1593486 - 1593476 - f 71 -2.4 -5.1244 | TGAGCAATATAAAAA CAGC TCC GCGG AGGAAACCTTGGACA Shew_1384 1593495 - 1593878 + | response regulator receiver protein Shew_1385 1593892 - 1594629 + | chemotaxis phosphatase, CheZ TERM 1537 1595506 - 1595490 - g 74 -7.9 -4.20696 | CGATGAATTTGAAAA GCTGCTC GAT GAGCTGC ATGGCGCCGGTGCTG Shew_1386 1594645 - 1596885 + | CheA signal transduction histidine kinase TERM 1538 1596916 - 1596939 + F 100 -14.6 -4.41348 | opp_overlap 1596913 TGAGCTATAGGATCA GCGTGATGCC CAGA GGCGTCACGC TTTGTTTAGGCAAGG Shew_1387 1596979 - 1598088 + | chemotaxis-specific methylesterase TERM 1539 1598100 - 1598123 + G 74 -6.6 -4.38219 | opp_overlap 1598100 1598099, overlap 1598104 1598104 CTAGGCAGCGACAAG GCCTCAGCAC CACA GTGCTGTTGC TGTTTTTTCTCTTGT TERM 1540 1598104 - 1598125 + G 91 -4.4 -5.55695 | opp_overlap 1598100 1598099, overlap 1598104 1598100 GCAGCGACAAGGCCT CAGCACCA CAGTGC TGTTGCTG TTTTTTCTCTTGTTA Shew_1388 1598081 - 1598704 + | hypothetical protein Shew_1389 1598751 - 1599542 + | cobyrinic acid a,c-diamide synthase Shew_1390 1599526 - 1600515 + | CheW protein TERM 1541 1600560 - 1600540 - g 77 -3.2 -5.1287 | gap 1, overlap 1600542 GGCAGATGCAAAAAA CGTCGCGGC AGTT GCCGC-AGG TAAAGATGATGAAGT TERM 1542 1600714 - 1600730 + G 70 -10.9 -3.35798 | overlap 1600721 GATCATTAACCTGCG CGGTAAC GTG GTTACCG TTATCGATACCCGCT Shew_1391 1600523 - 1601017 + | CheW protein TERM 1543 1601062 - 1601099 + F 74 -10.1 -3.21924 | gap 1, opp_overlap 1601071, overlap 1601060 1601071 CGATATAGCCATTGA CGATAAAAAGCCGTCG CCTAGTT CGATGGCTTTTT-TCG TGTTGTAAAAGGTCG TERM 1544 1601091 - 1601071 - f 74 -3.9 -4.9218 | opp_overlap 1601062 1601060 1601071 CATTGACGATAAAAA GCCGTCG CCTAGTT CGATGGC TTTTTTCGTGTTGTA TERM 1545 1601071 - 1601091 + F 87 -6.1 -5.30189 | opp_overlap 1601071, overlap 1601062 1601060 CATTGACGATAAAAA GCCGTCG CCTAGTT CGATGGC TTTTTTCGTGTTGTA Shew_1392 1601149 - 1601556 + | hypothetical protein TERM 1546 1601547 - 1601562 + T 76 -8.2 -4.26953 | GCGCCTTCACGGTAA GGGGCG ATAG CGCTCC TTTATTGAATTAGTT Shew_1393 1601943 - 1601587 - | FlhB domain-containing protein Shew_1394 1604096 - 1601943 - | hypothetical protein Shew_1395 1604284 - 1605066 + | VacJ family lipoprotein Shew_1396 1605197 - 1606300 + | response regulator receiver protein TERM 1547 1606371 - 1606341 - T 100 -13.5 -4.67904 | opp_overlap 1606348, overlap 1606348 CACCAAGTCTAAAAA CAAAAAACGCCAC ATTGA GTGGCGTTTTTTA TGGAATTAAATTTTA TERM 1548 1606364 - 1606348 - T 100 -9.4 -5.93252 | opp_overlap 1606348, overlap 1606341 TCTAAAAACAAAAAA CGCCAC ATTGA GTGGCG TTTTTTATGGAATTA TERM 1549 1606348 - 1606364 + T 100 -9.4 -5.27923 | opp_overlap 1606348 1606341 TCTAAAAACAAAAAA CGCCAC ATTGA GTGGCG TTTTTTATGGAATTA Shew_1397 1607875 - 1606406 - | amino acid/peptide transporter Shew_1398 1608453 - 1608980 + | NusG antitermination factor TERM 1550 1609532 - 1609549 + F 80 -8.5 -4.2558 | opp_overlap 1609532 TGCCTGAAAGGCAAA GACAGAA CAGT TTCTGTC TTTTAGTGGAAGCTG TERM 1551 1609549 - 1609532 - f 75 -8.5 -3.84451 | opp_overlap 1609532 TGCCTGAAAGGCAAA GACAGAA CAGT TTCTGTC TTTTAGTGGAAGCTG TERM 1552 1609561 - 1609595 + F 100 -14.5 -3.68619 | overlap 1609552 TGTCTTTTAGTGGAA GCTGCTAATGATTGT CAGGA ACCATCATTAGCAGC TTTAGCTGGCTTGAA Shew_1399 1609752 - 1612514 + | polysaccharide export protein TERM 1553 1612527 - 1612556 + F 86 -8 -4.78597 | TAGCCTTTACTATGA GCACTTTGATGA GCTTAG TTATCGAAGTGC TTTGTTTCTTCTTAG Shew_1400 1612600 - 1613574 + | lipopolysaccharide biosynthesis protein Shew_1401 1613792 - 1614889 + | dTDP-glucose 4,6 dehydratase Shew_1402 1614889 - 1615764 + | glucose-1-phosphate thymidylyltransferase TERM 1554 1616438 - 1616449 + G 74 -4.4 -4.72986 | opp_overlap 1616438, overlap 1616414 TAAATTGGTATCAAT TTGC TGAC GCAA TTTTTACTAAAGCTG Shew_1403 1615774 - 1616640 + | dTDP-4-dehydrorhamnose reductase Shew_1404 1616643 - 1617188 + | dTDP-4-dehydrorhamnose 3,5-epimerase Shew_1405 1617188 - 1618246 + | glycosyl transferase, group 1 TERM 1555 1619189 - 1619203 + G 100 -2.8 -6.02546 | ACCATTCTGATTGAG GGGAGT AAG ATTTCC TTTTTTTTAGTTTGG TERM 1556 1619524 - 1619536 + G 74 -4.9 -4.75404 | GCTTTTTTTGAGACT TTGTA TTT TACAA TTTTTGATGGGCTTT Shew_1406 1618274 - 1619782 + | polysaccharide biosynthesis protein Shew_1407 1619923 - 1620663 + | short-chain dehydrogenase/reductase SDR Shew_1408 1620695 - 1622437 + | thiamine pyrophosphate binding domain-containing protein Shew_1409 1622440 - 1623570 + | hypothetical protein TERM 1557 1624035 - 1624023 - g 70 -3.4 -4.78848 | overlap 1624018 TTTCCAAATAGAAAA GCTT TCCTT AAGC GCCTTAAACGTTCAG TERM 1558 1624173 - 1624185 + G 74 -4.9 -4.77438 | opp_overlap 1624173 GATATTATTCAGAAA GAAAA TTA TTTTC TTTTTGCTGGTAGGT Shew_1410 1623567 - 1624721 + | glycosyl transferase, group 1 Shew_1411 1624733 - 1625311 + | hexapaptide repeat-containing transferase Shew_1412 1625289 - 1626407 + | tetratricopeptide TPR_2 TERM 1559 1626416 - 1626428 + G 95 -2.7 -5.72622 | overlap 1626414 1626417 TGTATAGAATTAGTA TCTAT AAG ATAGG TTTTTTATTTCTAGC TERM 1560 1627092 - 1627104 + G 88 -4.8 -5.43487 | CTTTGTGCTTTATGT GACC TTTCC GGTC TTTTTTGTGTGGTTT Shew_1413 1626400 - 1627377 + | hypothetical protein Shew_1414 1627377 - 1628186 + | glycosyl transferase family protein Shew_1416 1629679 - 1630746 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase Shew_1417 1630900 - 1631943 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 1561 1632698 - 1632681 - g 91 -12.7 -4.07687 | ACTTGCTGGCTAAAA CCCCTGC TGGT GCAGGGG ATGAAATCCAATTGA Shew_1418 1631972 - 1632892 + | UTP-glucose-1-phosphate uridylyltransferase GalU TERM 1562 1632911 - 1632938 + F 82 -7 -4.98531 | opp_overlap 1632911 TGCCCCGAGATTTAA TGCCCACTTTGG CTTG CTGAAATGGGCA TTTTTCATTTCAGGG TERM 1563 1634624 - 1634602 - g 93 -10.6 -4.60041 | AGGTAGCTTGAAAAA CTGCACGG CAATAGC CCGTGCAG TAAAAGAGGCCGGAG Shew_1420 1634084 - 1634827 + | putative hydrolase Shew_1421 1635111 - 1635779 + | hypothetical protein Shew_1422 1636162 - 1637067 + | sulfate adenylyltransferase subunit 2 TERM 1564 1637213 - 1637199 - g 70 -2.8 -4.72007 | CTTCACGAAAACAAA GATATG TTG CGTATC TTGACCTGTGGCAGC Shew_1423 1637085 - 1638542 + | sulfate adenylyltransferase, large subunit Shew_1424 1638702 - 1640429 + | TrkA domain-containing protein TERM 1565 1640431 - 1640461 + F 85 -13.3 -2.75481 | opp_overlap 1640434 TTTTCCCGTTTTAGA CGAGGGGCGAGAC GATCG GTTTCGCCCATCG TGATTGCAGTTAACC Shew_1425 1640492 - 1641121 + | adenylyl-sulfate kinase TERM 1566 1641217 - 1641244 + T 85 -9.1 -4.30833 | overlap 1641219 CCGAATCTAATCTTC TAGAGCGCCGA AACTAC TCGGCGCCCTG TTTATTCGTCATTTC TERM 1567 1641219 - 1641242 + T 79 -9.5 -3.74047 | overlap 1641217 GAATCTAATCTTCTA GAGCGCCGA AACTAC TCGGCGCCC TGTTTATTCGTCATT Shew_1426 1642765 - 1641299 - | hypothetical protein TERM 1568 1643550 - 1643570 + G 73 -12.5 -2.70932 | overlap 1643563 GATAAATGTTATTAC GGCGCCCAG CAT CTTGGCGCC TGGTTGGCCAGCGCC Shew_1427 1643151 - 1643945 + | 3'(2'),5'-bisphosphate nucleotidase Shew_1428 1643974 - 1644864 + | fructokinase Shew_1429 1644939 - 1645679 + | hypothetical protein Shew_1430 1645692 - 1646360 + | hypothetical protein TERM 1569 1646380 - 1646358 - T 76 -10.6 -3.08173 | overlap 1646360 AGCAACCTTAGGCAA TAGCAGGTCA TCC TGGCCTGCTA GAAAGCGACTGCTGA TERM 1570 1646471 - 1646452 - T 100 -9.3 -5.38047 | opp_overlap 1646452 GATGGATATAAAAAA GGCCACA CAATCC TGTGGCC TTATTTGTTAAAGCT TERM 1571 1646452 - 1646471 + T 82 -9.3 -4.20768 | opp_overlap 1646452 GATGGATATAAAAAA GGCCACA CAATCC TGTGGCC TTATTTGTTAAAGCT Shew_1431 1646988 - 1646533 - | hypothetical protein Shew_1432 1647575 - 1647099 - | ferredoxin-type protein NapF Shew_1433 1648633 - 1647620 - | UDP-glucose 4-epimerase Shew_1434 1649553 - 1648633 - | UTP-glucose-1-phosphate uridylyltransferase GalU phhA 1649972 - 1650805 + | phenylalanine 4-monooxygenase phhB 1650852 - 1651190 + | pterin-4-alpha-carbinolamine dehydratase TERM 1572 1651210 - 1651236 + F 100 -17.4 -5.66868 | opp_overlap 1651210 AAATTGATTTAAAAA CAGCGTCATAGC CTA GCTATGGCGCTG TTTTTTTGGTTGCTT TERM 1573 1651236 - 1651210 - f 100 -15.2 -4.69027 | opp_overlap 1651210 AAATTGATTTAAAAA CAGCGTCATAGC CTA GCTATGGCGCTG TTTTTTTGGTTGCTT TERM 1574 1652232 - 1652250 + G 79 -13.2 -3.48924 | overlap 1652226 TGCCTGACAGCGCCG CCGAAGAG GAG CTCTTCGG TTATGTCAGCGGTGG Shew_1437 1651424 - 1652968 + | transcriptional regulator, TyrR TERM 1575 1652976 - 1652993 + F 70 -5.5 -4.36914 | opp_overlap 1652953, overlap 1652977 1652978 GGATGTAAAACCTTA TTGCCAG TTGG CTGGCGG TTTTCTAGGCAGAGA Shew_1438 1653215 - 1654201 + | fumarylacetoacetate (FAA) hydrolase TERM 1576 1654224 - 1654245 + F 100 -13.7 -4.82901 | AAACTTTTGAGACTT CGGGGCGAC CAAG GTTGCCCCG TTTTTGTAACAGCCG Shew_1439 1654295 - 1654939 + | maleylacetoacetate isomerase Shew_1440 1655859 - 1654969 - | LysR family transcriptional regulator TERM 1577 1654999 - 1655025 + g 100 -18 -3.68024 | opp_overlap 1654999 CAAGAATTCGACAAA CGCCCTGTCGGC AAG GCCGATGGGGCG TTCTCTATTCCAGGC TERM 1578 1655025 - 1654999 - G 93 -13.6 -3.95051 | opp_overlap 1654999 CAAGAATTCGACAAA CGCCCTGTCGGC AAG GCCGATGGGGCG TTCTCTATTCCAGGC Shew_1441 1656060 - 1657277 + | major facilitator transporter Shew_1442 1658686 - 1657319 - | two component, sigma54 specific, Fis family transcriptional regulator Shew_1443 1660512 - 1658689 - | integral membrane sensor signal transduction histidine kinase TERM 1579 1660569 - 1660527 - R 100 -17.9 -4.74103 | opp_overlap 1660524 1660540 TGTCCAATTGAAAAA GCGAATCTGAAAGGGGACC GATTA GATCCCGTTTCAGACTCGC CCAATTGTTAAGCAA Shew_1444 1661993 - 1660596 - | TRAP dicarboxylate transporter, DctM subunit Shew_1445 1662631 - 1661993 - | tripartite ATP-independent periplasmic transporter DctQ Shew_1446 1663729 - 1662719 - | TRAP dicarboxylate transporter, DctP subunit TERM 1580 1663519 - 1663546 + g 73 -12.8 -2.57957 | opp_overlap 1663519, overlap 1663518 1663517 1663540 GAGAGTTTGGGAACA CGTTTACCTGGT ACTC ACCGGGTAGACG CTCTTCTACTAGTTG TERM 1581 1663935 - 1663952 + r 91 -11.3 -4.11484 | opp_overlap 1663949 TTGGTCTTATTTCAA TGGGTGG GAAT CCACCCA TTTTGCGGGGTTAAA Shew_1447 1665258 - 1663993 - | major facilitator transporter Shew_1448 1665594 - 1665367 - | hypothetical protein Shew_1449 1667390 - 1668799 + | glutamyl-tRNA synthetase TERM 1582 1670441 - 1670422 - f 74 -7.8 -4.11692 | opp_overlap 1670424, overlap 1670424 TAGTTACGCGGAAAA GACCACCC AATA GGGTGGTT TTTTTTCATCTGTAG TERM 1583 1670439 - 1670424 - f 78 -10.4 -3.65542 | opp_overlap 1670424, overlap 1670422 GTTACGCGGAAAAGA CCACCC AATA GGGTGG TTTTTTTTCATCTGT TERM 1584 1670424 - 1670439 + F 100 -10.4 -5.92337 | opp_overlap 1670422 1670424 GTTACGCGGAAAAGA CCACCC AATA GGGTGG TTTTTTTTCATCTGT Shew_1450 1670738 - 1671238 + | putative cytochrome P460 Shew_1451 1673201 - 1671372 - | ABC transporter-related protein Shew_1452 1673444 - 1674955 + | AraC family transcriptional regulator Shew_1453 1675021 - 1675608 + | methylated-DNA--protein-cysteine methyltransferase Shew_1454 1675723 - 1677048 + | DEAD/DEAH box helicase domain-containing protein TERM 1585 1677312 - 1677336 + G 77 -8.6 -4.26202 | gap 2 CGAGGCGCACTGCGT GGCTCAGCTGCC CAA GGC-GCTG-GCC TTTATTCGTCAGTGT Shew_1455 1677082 - 1677552 + | dual specificity protein phosphatase Shew_1456 1677608 - 1679176 + | phospholipase D/transphosphatidylase Shew_1457 1679220 - 1680164 + | response regulator receiver modulated CheW protein TERM 1586 1680537 - 1680559 + G 79 -7.6 -4.67904 | overlap 1680538 ATTATCTTGGGGATC ATTGCCGGGG TAG CCCTGGCGAG TTTTTCACCTTCCTC TERM 1587 1680538 - 1680558 + G 75 -11.1 -3.40019 | overlap 1680537 TTATCTTGGGGATCA TTGCCGGGG TAG CCCTGGCGA GTTTTTCACCTTCCT Shew_1458 1680465 - 1681688 + | serine/threonine transporter SstT TERM 1588 1681743 - 1681728 - f 76 -10.4 -3.41878 | opp_overlap 1681728 TTTTCGAATTGAGAA GGAGCC GCTT GGCTCC TTTTTTGCGCCCGGT TERM 1589 1681728 - 1681743 + F 93 -10.4 -5.00884 | opp_overlap 1681728 TTTTCGAATTGAGAA GGAGCC GCTT GGCTCC TTTTTTGCGCCCGGT Shew_1459 1682087 - 1682491 + | hypothetical protein TERM 1590 1682520 - 1682504 - T 93 -10.8 -4.4846 | opp_overlap 1682504 TAAGCTAAGAAGAAA GGCGCC AGATA GGCGCC TTTTTTGTGTCTAGC TERM 1591 1682504 - 1682520 + T 100 -10.8 -5.4251 | opp_overlap 1682504 TAAGCTAAGAAGAAA GGCGCC AGATA GGCGCC TTTTTTGTGTCTAGC Shew_1460 1683229 - 1682576 - | pseudouridine synthase Shew_1461 1683421 - 1684398 + | zinc carboxypeptidase-related protein Shew_1462 1685117 - 1684467 - | lysine exporter protein LysE/YggA TERM 1592 1684981 - 1685003 + g 75 -12.6 -2.96216 | GCCACCGCCAGGCCC AGCGCGGCGG CGA CCGCCGTGCG TCTGTGCTCCTGGGC Shew_1463 1686084 - 1685245 - | AraC family transcriptional regulator TERM 1593 1685356 - 1685380 + g 77 -11.3 -3.68302 | opp_overlap 1685342 ATAGGCGGTGCTGAT GGCGCTGTCGC CCC GCATCAGCGCC TTCTTGGCATATTCC nadE 1686260 - 1687126 + | NAD synthetase TERM 1594 1687170 - 1687195 + T 93 -11.9 -3.72695 | opp_overlap 1687176, overlap 1687176 ATAGCAAACAGAATC GATAAAGGCGC CTAG GCGCCTTTTTC TTTGGTGAGGCCGCT TERM 1595 1687189 - 1687176 - T 81 -9.5 -4.0174 | opp_overlap 1687176 1687170 AACAGAATCGATAAA GGCGC CTAG GCGCC TTTTTCTTTGGTGAG TERM 1596 1687176 - 1687189 + T 100 -9.5 -5.33405 | opp_overlap 1687176, overlap 1687170 AACAGAATCGATAAA GGCGC CTAG GCGCC TTTTTCTTTGGTGAG Shew_1465 1687776 - 1687270 - | hypothetical protein TERM 1597 1689155 - 1689134 - g 74 -10.9 -3.56568 | gap 1, overlap 1689122 1689136 GAACGAGCCGCTAAA GAGCCTCGAC GAG GTCGAGGC-C AACAGATATCGACCT TERM 1598 1689154 - 1689136 - g 83 -14.6 -3.35775 | overlap 1689122 1689134 ACGAGCCGCTAAAGA GCCTCGAC GAG GTCGAGGC CAACAGATATCGACC Shew_1466 1687890 - 1689467 + | hypothetical protein Shew_1467 1691794 - 1689626 - | diguanylate cyclase TERM 1599 1690075 - 1690049 - G 70 -10 -3.37975 | overlap 1690050 ATCTATGATGCAGAA CGCCAGCGCCGC ATA GCTGCGCTTGCA CATATCGTGAATATT TERM 1600 1691141 - 1691171 + g 71 -11 -3.06261 | TCCCTCGATAAAGCT CTCGGTGGCCTTGC CTA GGTGGGCCGCCGAG TCTTCCAGGTTGAGC TERM 1601 1692152 - 1692171 + H 100 -12.2 -5.31519 | opp_overlap 1692152 TACTGTATACAAAAA GGACTACC AACA GGTAGTCC TTTTTATTTGGCTAT TERM 1602 1692171 - 1692152 - H 100 -12.2 -4.9792 | opp_overlap 1692152 TACTGTATACAAAAA GGACTACC AACA GGTAGTCC TTTTTATTTGGCTAT Shew_1468 1692664 - 1693248 + | hypothetical protein TERM 1603 1693538 - 1693520 - g 100 -3.1 -5.92399 | opp_overlap 1693522, overlap 1693522 CAACAAAAGAAAAAA CACAGGA TTTGC TCCTGTT GAGTACAAGTCAACG TERM 1604 1693536 - 1693522 - g 75 -5.7 -4.55111 | opp_overlap 1693522, overlap 1693520 ACAAAAGAAAAAACA CAGGA TTTGC TCCTG TTGAGTACAAGTCAA Shew_1469 1693317 - 1694948 + | hypothetical protein TERM 1605 1695016 - 1694985 - T 74 -11 -2.6186 | gap 1, opp_overlap 1694985, overlap 1694984 ACCCAATCCCATAAG CCGAGACAATG-ACA TCA CGTTCACTGTCTCGG TTTTTTATGTGTGAC TERM 1606 1694985 - 1695016 + T 100 -8.8 -5.4251 | opp_overlap 1694984 1694985 ACCCAATCCCATAAG CCGAGACAATGA CATCACGT TCACTGTCTCGG TTTTTTATGTGTGAC TERM 1607 1695112 - 1695139 + T 78 -11.4 -2.87769 | opp_overlap 1695117, overlap 1695117 CAAATCCCAGACAGC AAAAAGCCAGCT TCTC AGCTGGCTTTTC TAGTATTTGGTCGGT TERM 1608 1695117 - 1695134 + T 100 -11.3 -4.58303 | opp_overlap 1695117, overlap 1695112 CCCAGACAGCAAAAA GCCAGCT TCTC AGCTGGC TTTTCTAGTATTTGG TERM 1609 1695134 - 1695117 - T 100 -11.3 -4.84527 | opp_overlap 1695112 1695117 CCCAGACAGCAAAAA GCCAGCT TCTC AGCTGGC TTTTCTAGTATTTGG Shew_1470 1697191 - 1695404 - | sulfatase Shew_1471 1697507 - 1697292 - | hypothetical protein Shew_1472 1697585 - 1698616 + | nucleoid-associated protein NdpA TERM 1610 1698649 - 1698665 + F 100 -8.7 -5.42514 | opp_overlap 1698649 CAGCGCCAGAAAAAA GCGTCTG TGT TAGACGC TTTTTTCGTTTATGA TERM 1611 1698665 - 1698649 - f 91 -8 -5.252 | opp_overlap 1698649 CAGCGCCAGAAAAAA GCGTCT GTGTT AGACGC TTTTTTCGTTTATGA Shew_1473 1698846 - 1699730 + | hypothetical protein TERM 1612 1699955 - 1699970 + G 77 -10.4 -3.79481 | opp_overlap 1699954 1699953 1699957, overlap 1699960 CGAGCCAGTAAAAGT CAGCCC CGAA GGGCTG TTTGCCTTCGGTTTC Shew_1474 1699794 - 1700657 + | peptidase M23B TERM 1613 1700729 - 1700745 + F 100 -13.7 -4.85129 | opp_overlap 1700729 CGAAATATCAGTTAA GGCGACC AAG GGTCGCC TTTTTCATGTCTCCT TERM 1614 1700745 - 1700729 - f 93 -13.7 -3.1489 | opp_overlap 1700729 CGAAATATCAGTTAA GGCGACC AAG GGTCGCC TTTTTCATGTCTCCT Shew_1475 1700959 - 1701648 + | hypothetical protein Shew_1476 1701706 - 1702344 + | RNA polymerase sigma factor Shew_1477 1702337 - 1703086 + | anti-ECFsigma factor, ChrR Shew_1478 1703136 - 1704080 + | hypothetical protein TERM 1615 1704723 - 1704741 + G 71 -8.8 -3.85698 | ACAGTGAGCAGGTGA TGGGCCAG CTG CTGCCCCA TTTCTGGCAAGACAA TERM 1616 1705273 - 1705291 + G 74 -10.2 -3.70051 | overlap 1705271 1705290 GTGGGCCGCCAGCAC GGGCTGCG ATG CCCAGCCC TATTTTAGGATCTTT Shew_1479 1704077 - 1705513 + | deoxyribodipyrimidine photo-lyase Shew_1480 1705515 - 1705958 + | hypothetical protein Shew_1481 1705968 - 1706690 + | short-chain dehydrogenase/reductase SDR Shew_1482 1706687 - 1707940 + | amine oxidase Shew_1483 1707937 - 1708740 + | hypothetical protein Shew_1484 1708852 - 1710132 + | cyclopropane-fatty-acyl-phospholipid synthase Shew_1485 1710110 - 1710619 + | hypothetical protein Shew_1486 1710668 - 1711156 + | hypothetical protein Shew_1487 1711153 - 1711686 + | hypothetical protein Shew_1488 1711941 - 1713326 + | FAD linked oxidase domain-containing protein TERM 1617 1713390 - 1713353 - T 100 -12.3 -4.98531 | gap 1, opp_overlap 1713351 1713350 GGTTGAAAGCAAAAA CCAAGTGACTGTTTATTT GCA AGATA-ACAGTCACTTGG CAGTTATCTGACTGC Shew_1489 1714035 - 1713445 - | hypothetical protein Shew_1490 1714694 - 1714110 - | ErfK/YbiS/YcfS/YnhG family protein Shew_1491 1714795 - 1715622 + | Ion transport protein Shew_1492 1715681 - 1717168 + | MATE efflux family protein TERM 1618 1717248 - 1717229 - T 100 -12.1 -4.89852 | TGAGAGGTACAAAAA CGGCGCC CGTGAT GGCGCCG CTTGGGGGAAGGACT Shew_1493 1717607 - 1717338 - | hypothetical protein Shew_1494 1717732 - 1718055 + | hypothetical protein Shew_1495 1718148 - 1718813 + | hypothetical protein TERM 1619 1718807 - 1718828 + T 84 -9.4 -4.20367 | TCATGGACGCTTTCA GCGCTGAG ATGTGA CTCGGCGC TTATTTGTTGGCAAA Shew_1496 1719362 - 1718829 - | putative lipoprotein TERM 1620 1719357 - 1719373 + g 70 -12.3 -2.66451 | opp_overlap 1719346, overlap 1719353 CCAATCGCCGGGGGA GGTCACC CCA GGTGACC TGACTTTACCTAAAT Shew_1497 1719558 - 1720292 + | hypothetical protein TERM 1621 1720737 - 1720749 + G 70 -5.5 -4.37502 | overlap 1720727 GGGTCGCCATGGGGA TAGCC CTG GGCTG TTTTCGTATCGTGGT Shew_1498 1720292 - 1721080 + | hypothetical protein Shew_1499 1721070 - 1721420 + | putative nitrogen regulatory protein P-II Shew_1500 1721417 - 1721821 + | signal transduction protein TERM 1622 1721862 - 1721845 - T 100 -12.7 -5.24796 | GCCAGACAATAAAAA GGGCACC CTAG GGTGCCC ATTGAGCTTAAGCGA Shew_1501 1722262 - 1721906 - | glutaredoxin TERM 1623 1722452 - 1722420 - R 100 -7.1 -5.63517 | gap 2 GCGGCAAATAAAAAA CGGCCAAGCTGTCCA TAAAC TGGA--GCCTGGCCG CCTGATGAGGTTAAC Shew_1502 1725834 - 1722475 - | hypothetical protein TERM 1624 1725438 - 1725450 + g 71 -7.7 -4.18494 | ACCTTAGCGCCTCGT CGCTT TCT AAGCG TTTTACCTCGGCGTG TERM 1625 1725555 - 1725571 + g 86 -2.2 -5.65513 | CGAGGCGTTTAAAGC CGACAA AGGGC TGGTCG TTTTTTTCCTTGATG Shew_1503 1726005 - 1726997 + | oxidoreductase FAD-binding subunit Shew_1504 1727129 - 1727560 + | GCN5-related N-acetyltransferase Shew_1505 1727632 - 1728336 + | hypothetical protein TERM 1626 1728405 - 1728419 + F 100 -11.4 -5.4833 | opp_overlap 1728405 CTCAATGATTCAGAA GGGAGC CAG GCTCCC TTTTTTGTTGGCTAA TERM 1627 1728419 - 1728405 - f 83 -11.4 -3.39595 | opp_overlap 1728405 CTCAATGATTCAGAA GGGAGC CAG GCTCCC TTTTTTGTTGGCTAA Shew_1506 1728569 - 1728919 + | glyoxalase/bleomycin resistance protein/dioxygenase Shew_1507 1728922 - 1729269 + | 5-carboxymethyl-2-hydroxymuconate isomerase Shew_1508 1729343 - 1730116 + | extracellular solute-binding protein TERM 1628 1730176 - 1730135 - T 100 -14.7 -4.61633 | opp_overlap 1730137 1730148, overlap 1730136 1730137 1730148 ACAGAGCGTTAAAAA GTGCATAAAAAAAGAGACC CTGT GGTCTCTTTTTTTATGCTT GTTCAAATGCAGTGA TERM 1629 1730175 - 1730136 - T 100 -18.2 -3.36256 | opp_overlap 1730137 1730148, overlap 1730135 1730137 1730148 CAGAGCGTTAAAAAG TGCATAAAAAAAGAGACC CTGT GGTCTCTTTTTTTATGCT TGTTCAAATGCAGTG TERM 1630 1730174 - 1730137 - T 100 -21.7 -2.61272 | opp_overlap 1730137 1730148, overlap 1730136 1730135 1730148 AGAGCGTTAAAAAGT GCATAAAAAAAGAGACC CTGT GGTCTCTTTTTTTATGC TTGTTCAAATGCAGT TERM 1631 1730137 - 1730174 + T 100 -21.7 -3.65224 | opp_overlap 1730137 1730136 1730135 1730148, overlap 1730148 AGAGCGTTAAAAAGT GCATAAAAAAAGAGACC CTGT GGTCTCTTTTTTTATGC TTGTTCAAATGCAGT TERM 1632 1730163 - 1730148 - T 100 -9 -5.63504 | opp_overlap 1730137 1730148, overlap 1730137 1730136 1730135 AAGTGCATAAAAAAA GAGACC CTGT GGTCTC TTTTTTTATGCTTGT TERM 1633 1730148 - 1730163 + T 100 -9 -5.73339 | opp_overlap 1730148 1730137 1730136 1730135, overlap 1730137 AAGTGCATAAAAAAA GAGACC CTGT GGTCTC TTTTTTTATGCTTGT asnB 1731850 - 1730192 - | asparagine synthetase B TERM 1634 1732139 - 1732165 + r 86 -12.4 -3.21912 | opp_overlap 1732144, overlap 1732144 GGCGGATAAATAAAC AAAAAGGCTTCC GAT GGAAGCCTTTTA TTCATGAGTTGCCGA TERM 1635 1732144 - 1732160 + r 100 -12.3 -4.731 | opp_overlap 1732144, overlap 1732139 ATAAATAAACAAAAA GGCTTCC GAT GGAAGCC TTTTATTCATGAGTT TERM 1636 1732160 - 1732144 - R 100 -12.3 -5.56573 | opp_overlap 1732144 1732139 ATAAATAAACAAAAA GGCTTCC GAT GGAAGCC TTTTATTCATGAGTT Shew_1510 1733851 - 1732190 - | peptidase M28 TERM 1637 1733348 - 1733330 - G 77 -10.2 -3.72576 | CGCCTTGCCATTAAA CTTGCCCG ACT CGGGCAGG GCAAAGCCGGGGTCG TERM 1638 1733851 - 1733862 + g 75 -2.2 -5.11254 | GTAGGGCAAAACGCA TGGG ACTT CCTA TTTGTTTTTGTTATT TERM 1639 1734041 - 1734022 - R 100 -15 -5.34555 | opp_overlap 1734020 GCATAGGATAAAAAA CGCGCGGT CTGG ACCGCGCG CCTTGGCTAGTGATT Shew_1511 1734831 - 1734073 - | UMP phosphatase TERM 1640 1735048 - 1735063 + r 93 -9 -5.09895 | opp_overlap 1735048 TACGCCAATAAAAAA GAGACC CTGA GGTCTC TTTTTTAGATAGCTG TERM 1641 1735063 - 1735048 - R 100 -9 -5.46657 | opp_overlap 1735048 TACGCCAATAAAAAA GAGACC CTGA GGTCTC TTTTTTAGATAGCTG Shew_1512 1735736 - 1735092 - | phosphoribosylglycinamide formyltransferase Shew_1513 1736773 - 1735736 - | phosphoribosylaminoimidazole synthetase TERM 1642 1736481 - 1736465 - G 72 -3.5 -4.74132 | overlap 1736467 ATAGTCGAGGAAAAA CAGGGGC TCT GCACCGG CAACAATCAGATCGT upp 1736985 - 1737611 + | uracil phosphoribosyltransferase TERM 1643 1737677 - 1737662 - T 100 -10.4 -5.1861 | opp_overlap 1737662 GTGAGCAGTAAAAAA GGAGCC TTAA GGCTCC TTTTTTTATGGATCT TERM 1644 1737662 - 1737677 + T 100 -10.4 -5.65177 | opp_overlap 1737662 GTGAGCAGTAAAAAA GGAGCC TTAA GGCTCC TTTTTTTATGGATCT Shew_1515 1739025 - 1737706 - | Na+/H+ antiporter NhaC TERM 1645 1739022 - 1739040 + g 85 -4.6 -5.24989 | overlap 1739039 CAATAACAACTGCAT TCATATTG ATT CAATCTGA TTTTTTAATCTGTAA Shew_1516 1739339 - 1739944 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 1646 1739992 - 1740007 + T 100 -10.4 -5.96219 | opp_overlap 1739992 AAATGTTAGCAAAAA GCTGCC CTAG GGCAGC TTTTTTTTATGGCTG TERM 1647 1740007 - 1739992 - T 91 -10.4 -4.75404 | opp_overlap 1739992 AAATGTTAGCAAAAA GCTGCC CTAG GGCAGC TTTTTTTTATGGCTG Shew_1517 1740661 - 1740080 - | putative adenylyl cyclase CyaB Shew_1518 1740943 - 1741689 + | hypothetical protein TERM 1648 1742002 - 1742017 + G 76 -5.4 -4.77925 | overlap 1741990 CGCTCCCGTCACCCT GATAGG ATTA CCTGTC TTTTTGGCATTTTTT Shew_1519 1741841 - 1742857 + | hypothetical protein TERM 1649 1742906 - 1742873 - T 89 -14.7 -2.71483 | opp_overlap 1742872 1742871 1742897 ATATCGGTTTAATTA TTGATAGCTCGCCGC ATCC GCTACGAGCTATCAA GCTCTTACTATTAAG Shew_1520 1743730 - 1742957 - | ribonuclease T Shew_1521 1743839 - 1744699 + | OmpA/MotB domain-containing protein TERM 1650 1744750 - 1744734 - f 83 -10.8 -3.68506 | opp_overlap 1744734, overlap 1744745 TAATATTTATGGAAA CCGGCC AACAA GGCCGG TTTTTTGTTATCGGC TERM 1651 1744734 - 1744750 + F 100 -10.8 -5.55769 | opp_overlap 1744734 1744745 TAATATTTATGGAAA CCGGCC AACAA GGCCGG TTTTTTGTTATCGGC TERM 1652 1744841 - 1744820 - f 100 -13.1 -5.85178 | AACAGGCAAAAAAAA GCCCACTTA ATCT TAAGTGGGC CGCAAATAAATCATT Shew_1522 1745372 - 1747462 + | prolyl oligopeptidase TERM 1653 1747498 - 1747480 - f 90 -8.9 -4.788 | opp_overlap 1747480 AAACCAACCTAAAAA GGGAAGT GAATA ACTTCCC TTTTTTATTAACAAA TERM 1654 1747480 - 1747498 + F 100 -8.9 -5.4505 | opp_overlap 1747480 AAACCAACCTAAAAA GGGAAGT GAATA ACTTCCC TTTTTTATTAACAAA Shew_1523 1747621 - 1748019 + | 4-hydroxybenzoyl-CoA thioesterase Shew_1524 1748009 - 1748698 + | MotA/TolQ/ExbB proton channel TERM 1655 1749109 - 1749085 - g 89 -8.5 -4.85599 | overlap 1749086 GTGACGTTACAAAAA GCAGGCGTACC TTC GGTAGGCCTGA TGACAGATTCGCCTG TERM 1656 1749108 - 1749086 - g 78 -12 -3.50877 | overlap 1749085 TGACGTTACAAAAAG CAGGCGTACC TTC GGTAGGCCTG ATGACAGATTCGCCT Shew_1525 1748698 - 1749132 + | biopolymer transport protein ExbD/TolR Shew_1526 1749136 - 1750071 + | TolA family protein Shew_1527 1750081 - 1751406 + | TolB domain-containing protein Shew_1528 1751441 - 1751983 + | OmpA domain-containing protein Shew_1529 1752003 - 1752725 + | TPR repeat-containing protein TERM 1657 1752759 - 1752745 - f 76 -2.8 -5.28481 | opp_overlap 1752745 TATTTAACCAAAAAA CATACT CTT AGTCTG TTTTTCATGCAAACA TERM 1658 1754942 - 1754956 + G 83 -10 -4.19735 | GTCGTAGATTTCCAA GCGAGA GAG TCTCGC TTTAATTTTAAGACA Shew_1530 1754711 - 1755853 + | porin TERM 1659 1755901 - 1755866 - T 81 -12.8 -2.52676 | gap 1, opp_overlap 1755870 1755876, overlap 1755876 TAGGGCGTGAACTGA GCATA-AAAAAGGAGGC TAA GCCTCCTTTTTCTTTGC CTCAATTACAGCAAA TERM 1660 1755870 - 1755896 + T 95 -12.4 -3.68619 | opp_overlap 1755866 1755876, overlap 1755876 GCGTGAACTGAGCAT AAAAAAGGAGGC TAA GCCTCCTTTTTC TTTGCCTCAATTACA TERM 1661 1755890 - 1755876 - T 100 -11.4 -5.31877 | opp_overlap 1755870 1755876, overlap 1755866 ACTGAGCATAAAAAA GGAGGC TAA GCCTCC TTTTTCTTTGCCTCA TERM 1662 1755876 - 1755890 + T 100 -11.4 -5.30616 | opp_overlap 1755876 1755866, overlap 1755870 ACTGAGCATAAAAAA GGAGGC TAA GCCTCC TTTTTCTTTGCCTCA grxA 1756164 - 1755907 - | glutaredoxin 1 Shew_1532 1757969 - 1756230 - | type III restriction enzyme, res subunit TERM 1663 1758062 - 1758046 - R 100 -13.7 -5.76633 | GGAGATATAAAAAAA GCCCCTC GAA GAGGGGC TAGAAGAGAGAATCT Shew_1533 1760045 - 1758093 - | acetyl-CoA synthetase TERM 1664 1760520 - 1760532 + G 75 -9.1 -4.15222 | opp_overlap 1760519 1760516 GGCGCAAAACATCAC GTCGG TGG CCGAC TTTATTGCCGCCCGT TERM 1665 1762480 - 1762466 - g 83 -11.4 -3.92178 | AGGAGGTCAACGAAA CCCTGG AGG CCAGGG TGAAGGAGCGTACCT Shew_1534 1760224 - 1763646 + | integral membrane sensor hybrid histidine kinase Shew_1535 1763680 - 1764291 + | fumarylacetoacetate (FAA) hydrolase TERM 1666 1764627 - 1764643 + G 72 -2.1 -4.96848 | opp_overlap 1764621, overlap 1764621 GCCATAGAAGCGACT GGGTCAG TAG CTTTCCC TTTTTCTATCAACAG Shew_1536 1764380 - 1765006 + | putative chloramphenicol acetyltransferase TERM 1667 1765012 - 1765040 + F 74 -9.4 -3.29421 | overlap 1765010 1765012 1765014 1765016 GACCCGTTAACGTCT GCAGCGCGCCGC AGTCA GCGGCGCGTATC TGCTTTTATATTTAC TERM 1668 1765012 - 1765043 + F 75 -5.2 -4.78848 | gap 3, overlap 1765012 1765010 1765014 1765016 GACCCGTTAACGTCT GCAG---CGCGCCGC AGTCA GCGGCGCGTATCTGC TTTTATATTTACCCG TERM 1669 1765014 - 1765038 + F 78 -10.6 -3.19285 | overlap 1765012 1765010 1765012 1765016 CCCGTTAACGTCTGC AGCGCGCCGC AGTCA GCGGCGCGTA TCTGCTTTTATATTT TERM 1670 1765016 - 1765036 + F 100 -15.4 -3.13323 | overlap 1765014 1765012 1765010 1765012 CGTTAACGTCTGCAG CGCGCCGC AGTCA GCGGCGCG TATCTGCTTTTATAT TERM 1671 1765301 - 1765286 - f 84 -7.5 -4.93812 | AAAATATAAAACAAA GCCGC ATCATG GCGGC GCAACCTAACGATTA Shew_1537 1765328 - 1766617 + | FAD dependent oxidoreductase Shew_1538 1766794 - 1767039 + | hypothetical protein TERM 1672 1767086 - 1767112 + T 100 -10.9 -5.27399 | opp_overlap 1767086 GTTAAACAAGAGAAA CGCGCCTTCAT ACCAG ATGAAGGGGCG TTTTTTACTGTCTTA TERM 1673 1767112 - 1767086 - T 90 -10.9 -4.40333 | opp_overlap 1767086 GTTAAACAAGAGAAA CGCGCCTTCAT ACCAG ATGAAGGGGCG TTTTTTACTGTCTTA Shew_1539 1768011 - 1767142 - | LysR family transcriptional regulator Shew_1540 1768212 - 1769342 + | alcohol dehydrogenase TERM 1674 1769362 - 1769387 + F 100 -13.3 -3.57263 | overlap 1769363 CATTTGGCTTAGCTT AGGTGCAGACG CCCG CGTCTGCACCC TTTAGGGATGAGAGT TERM 1675 1769363 - 1769386 + F 100 -16.8 -2.74144 | overlap 1769362 ATTTGGCTTAGCTTA GGTGCAGACG CCCG CGTCTGCACC CTTTAGGGATGAGAG Shew_1541 1769403 - 1770239 + | carboxylesterase TERM 1676 1770272 - 1770250 - T 87 -13.6 -3.04501 | opp_overlap 1770242, overlap 1770252 ATTAATTTTGCAAGA GACCCAAATA TAT TATTTGGGTC TCGCGGGGTGATTTG TERM 1677 1770270 - 1770252 - T 73 -10.4 -3.0782 | opp_overlap 1770242, overlap 1770250 TAATTTTGCAAGAGA CCCAAATA TAT TATTTGGG TCTCGCGGGGTGATT Shew_1542 1771800 - 1770262 - | major facilitator transporter TERM 1678 1771045 - 1771057 + g 88 -3.3 -5.5112 | overlap 1771046 GTCTAAATATTGTCC TCGTC CCC GGCGG TTTTTTATTGCTAAG Shew_1543 1772873 - 1771815 - | secretion protein HlyD family protein TERM 1679 1772337 - 1772351 + g 75 -10 -3.85165 | opp_overlap 1772330 CGAACTAAGCTGTAA CTGGCT CGC AGCCAG TTTCGCTTTCGCCTG Shew_1544 1772921 - 1773580 + | TetR family transcriptional regulator TERM 1680 1773727 - 1773706 - T 72 -7.3 -4.0827 | opp_overlap 1773705, overlap 1773707 AGACAGGGAGAGAAA GGGAAGATC ATAG GATCTTCCA CCTAGGTTAAAGCTC TERM 1681 1773726 - 1773707 - T 76 -10.8 -3.04239 | opp_overlap 1773705, overlap 1773706 GACAGGGAGAGAAAG GGAAGATC ATAG GATCTTCC ACCTAGGTTAAAGCT Shew_1545 1774393 - 1773734 - | two component LuxR family transcriptional regulator Shew_1546 1775069 - 1774644 - | thioesterase superfamily protein TERM 1682 1775127 - 1775102 - R 81 -2 -5.47821 | gap 2, overlap 1775103 ATGCATTGAAAAAAA CCGGCGGATTAT ACTG ATAATC-G-CGG CGTAATGACAGCGCT TERM 1683 1775206 - 1775174 - R 74 -10.8 -2.78384 | opp_overlap 1775182, overlap 1775182 GCGGCTTTCATGACA TTAAAAAAGGCTTC ACGAG GAAGCCTTTTTAAA ATAATCACATTAGGT TERM 1684 1775198 - 1775182 - R 91 -8 -5.23316 | opp_overlap 1775182, overlap 1775174 CATGACATTAAAAAA GGCTTC ACGAG GAAGCC TTTTTAAAATAATCA TERM 1685 1775182 - 1775198 + r 85 -8 -4.63527 | opp_overlap 1775174 1775182 CATGACATTAAAAAA GGCTTC ACGAG GAAGCC TTTTTAAAATAATCA Shew_1547 1776284 - 1775223 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1686 1775254 - 1775277 + g 74 -6.6 -4.42386 | ATGCGCGCCTTGGAG GCTGCAGCAA GGTC TCGCAGCAGC TTTTCTGAGTCGGCC TERM 1687 1775628 - 1775605 - G 74 -11 -3.2963 | opp_overlap 1775592 ATGATGTGGCCATAA GGGTTACCGC TGGT GCGGTAAACC GCCATGGCGCCATCT Shew_1548 1777274 - 1776462 - | hypothetical protein TERM 1688 1779740 - 1779696 - g 70 -10.3 -3.25823 | gap 1, opp_overlap 1779693 1779696 TGGTTGGTAGAGCAA GGCATCGA-CACTGTATC GCTTAACCCA GATACAGTGATCGATACC TGGTTATACCTGGGT Shew_1549 1777401 - 1779770 + | phosphoenolpyruvate synthase TERM 1689 1779805 - 1779820 + F 100 -10.4 -6.28967 | opp_overlap 1779805 AGCTAATTGACGAAA GCCGCT TTTT AGCGGC TTTTTTTTGTTTATA TERM 1690 1779820 - 1779805 - f 80 -10.4 -3.79668 | opp_overlap 1779805 AGCTAATTGACGAAA GCCGCT TTTT AGCGGC TTTTTTTTGTTTATA TERM 1691 1781511 - 1781529 + G 71 -12.4 -2.85351 | opp_overlap 1781496 1781511, overlap 1781513 GCTGGTGGCACCTAA GGGCAGCG GAC CGCTGCTC TATAATGTCGACAGC TERM 1692 1781513 - 1781527 + G 70 -11.4 -2.97747 | opp_overlap 1781511 1781496, overlap 1781511 TGGTGGCACCTAAGG GCAGCG GAC CGCTGC TCTATAATGTCGACA Shew_1550 1779880 - 1782960 + | FAD linked oxidase domain-containing protein Shew_1551 1783023 - 1783472 + | hypothetical protein Shew_1552 1783596 - 1784012 + | MarR family transcriptional regulator Shew_1553 1784052 - 1784534 + | hypothetical protein TERM 1693 1784525 - 1784544 + T 100 -8.6 -5.47431 | TGGGGAAAGCCTGAC GCTTTGCT AATA AGCAGAGC TTTTTTATGTATTGG Shew_1554 1785014 - 1784670 - | hypothetical protein TERM 1694 1785244 - 1785212 - R 89 -14.4 -3.05384 | opp_overlap 1785219, overlap 1785219 TTGGGTTGCAGGCAA TAAAAAACCACCGA ACCTG TCGGTGGTTTTTCA ATCCGGCTAGTACCA TERM 1695 1785237 - 1785219 - R 100 -10.3 -5.4833 | opp_overlap 1785219, overlap 1785212 GCAGGCAATAAAAAA CCACCGA ACCTG TCGGTGG TTTTTCAATCCGGCT TERM 1696 1785219 - 1785237 + r 91 -10.3 -4.66163 | opp_overlap 1785212 1785219 GCAGGCAATAAAAAA CCACCGA ACCTG TCGGTGG TTTTTCAATCCGGCT Shew_1555 1786308 - 1785277 - | Glu/Leu/Phe/Val dehydrogenase, dimerisation region TERM 1697 1785389 - 1785405 + g 84 -6.6 -4.88736 | GTGTTGTAGATCTCT TCTACC TTGGC GGTAGA TTTTTGTGCGTCGTA TERM 1698 1786465 - 1786482 + H 72 -8.5 -3.63656 | CAATTTTGCTTTCCA CTTTACG TTAA CGTAAAG TTGTGTGTGAATTTT Shew_1556 1786565 - 1787014 + | hypothetical protein TERM 1699 1787097 - 1787075 - T 79 -6.9 -4.65916 | opp_overlap 1787077, overlap 1787077 TTGAGCCTAATAAAA CAGCCGCCC ATCTG AGGCGGCTT TTTTGTGTTCTCAGC TERM 1700 1787095 - 1787077 - T 81 -9.5 -3.94438 | opp_overlap 1787077, overlap 1787075 GAGCCTAATAAAACA GCCGCCC ATCTG AGGCGGC TTTTTTGTGTTCTCA TERM 1701 1787077 - 1787095 + T 100 -8.8 -5.5208 | opp_overlap 1787077 1787075 GAGCCTAATAAAACA GCCGCC CATCTGA GGCGGC TTTTTTGTGTTCTCA Shew_1557 1788362 - 1787202 - | cupin 4 family protein TERM 1702 1787886 - 1787924 + g 79 -13 -3.53091 | overlap 1787887 1787916 CAGCGCCGTGTGGGT ATCGCCGCCGCGGGGCGA ATA TTGCCCCTTGGCGCCGAC TTTCCAGCGGCGCCT TERM 1703 1787887 - 1787923 + g 85 -16.5 -2.71712 | overlap 1787886 1787916 AGCGCCGTGTGGGTA TCGCCGCCGCGGGGCGA ATA TTGCCCCTTGGCGCCGA CTTTCCAGCGGCGCC TERM 1704 1788523 - 1788500 - R 100 -14.6 -5.38054 | opp_overlap 1788500 1788513 1788522 TTCCAGAAATAAAAA GGCGGTAAGC TGCT GCCTACCGCC TTTCATAAGGTGTTA TERM 1705 1788500 - 1788523 + r 100 -12.4 -3.76379 | opp_overlap 1788500, overlap 1788513 1788522 TTCCAGAAATAAAAA GGCGGTAAGC TGCT GCCTACCGCC TTTCATAAGGTGTTA Shew_1558 1789916 - 1788546 - | adenylosuccinate lyase TERM 1706 1789671 - 1789685 + g 77 -11.4 -3.68341 | GGCCTCGATGGTCTT GACGCG CAG CGCGTC TTCTTCGCTGAAGTT Shew_1559 1790566 - 1789949 - | hypothetical protein TERM 1707 1790441 - 1790495 + g 70 -5 -4.42653 | gap 1 ATTGGTCACCATGAT GGTACCCAGACAGGCGCCAAGCA TCTCATCGTC TGCCTGGC-CGTGTCTGGCAACC TTTTGTACCTGACCT trmU 1791685 - 1790570 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1708 1791069 - 1791048 - G 74 -6.5 -4.37658 | AAGGTGCGCAGAAAA TCGGTGAAC TTAC GCTCGCCGA TAAAGCAGATGCCTG Shew_1561 1792312 - 1791863 - | NUDIX hydrolase Shew_1562 1793118 - 1792324 - | pseudouridylate synthase TERM 1709 1792897 - 1792920 + g 86 -10.4 -4.32857 | overlap 1792884 1792878 TGGCTTAGGTTTGGA CCTAGGCTTA GCTT TAAGCTTAGG TTTGTGTTTGACACC Shew_1563 1793391 - 1795610 + | isocitrate dehydrogenase, NADP-dependent TERM 1710 1795621 - 1795656 + T 70 -6.2 -4.29508 | opp_overlap 1795624 1795631, overlap 1795617 1795622 1795624 1795631 GCTAATTTAGCCATA TAATAAAAAAGGGCGC CACG GCACCCTTTTTTATGC TTTGTTGGTGTCCGT TERM 1711 1795622 - 1795655 + T 72 -9.7 -3.16982 | opp_overlap 1795624 1795631, overlap 1795621 1795617 1795624 1795631 CTAATTTAGCCATAT AATAAAAAAGGGCGC CACG GCACCCTTTTTTATG CTTTGTTGGTGTCCG TERM 1712 1795653 - 1795624 - T 100 -14.5 -3.52668 | opp_overlap 1795622 1795621 1795617 1795624 1795631, overlap 1795631 AATTTAGCCATATAA TAAAAAAGGGCGC CACG GCACCCTTTTTTA TGCTTTGTTGGTGTC TERM 1713 1795624 - 1795653 + T 86 -12.3 -3.14013 | opp_overlap 1795624 1795631, overlap 1795622 1795621 1795617 1795631 AATTTAGCCATATAA TAAAAAAGGGCGC CACG GCACCCTTTTTTA TGCTTTGTTGGTGTC TERM 1714 1795646 - 1795631 - T 100 -8.2 -5.60689 | opp_overlap 1795624 1795622 1795621 1795617 1795631, overlap 1795624 CCATATAATAAAAAA GGGCGC CACG GCACCC TTTTTTATGCTTTGT TERM 1715 1795631 - 1795646 + T 91 -6 -5.43621 | opp_overlap 1795631 1795624, overlap 1795624 1795622 1795621 1795617 CCATATAATAAAAAA GGGCGC CACG GCACCC TTTTTTATGCTTTGT TERM 1716 1795726 - 1795689 - T 84 -12.9 -2.56601 | opp_overlap 1795699, overlap 1795699 GCGATTAAAAATCAG CAATAAAAAAGGCAGGG ATAA CCCTGCCTTTTTTGTTT TTTGACCCACTATTT TERM 1717 1795716 - 1795699 - T 100 -12.7 -5.52023 | opp_overlap 1795699, overlap 1795689 ATCAGCAATAAAAAA GGCAGGG ATAA CCCTGCC TTTTTTGTTTTTTGA TERM 1718 1795699 - 1795716 + T 100 -12.7 -6.04324 | opp_overlap 1795699 1795689 ATCAGCAATAAAAAA GGCAGGG ATAA CCCTGCC TTTTTTGTTTTTTGA Shew_1564 1795942 - 1795736 - | cold-shock DNA-binding domain-containing protein TERM 1719 1796307 - 1796321 + G 81 -4.2 -5.14965 | opp_overlap 1796287 1796320, overlap 1796287 ATGGACTTTGTCATC GAGGTG TTA CAACTC TTTTTTAATAAAAAT Shew_1565 1796187 - 1796495 + | ATP-dependent Clp protease adaptor protein ClpS Shew_1566 1796531 - 1798789 + | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 1720 1798830 - 1798803 - T 79 -11.4 -3.09759 | opp_overlap 1798809, overlap 1798809 AATACACTGACGTAA TAAAAAGGCTGC AGAT GCAGCCTTTTTT CATGATTTGGTTTAT TERM 1721 1798824 - 1798809 - T 93 -10.4 -5.10461 | opp_overlap 1798809, overlap 1798803 CTGACGTAATAAAAA GGCTGC AGAT GCAGCC TTTTTTCATGATTTG TERM 1722 1798809 - 1798824 + T 100 -10.4 -5.243 | opp_overlap 1798809 1798803 CTGACGTAATAAAAA GGCTGC AGAT GCAGCC TTTTTTCATGATTTG TERM 1723 1798966 - 1798990 + T 87 -11.5 -3.62046 | opp_overlap 1798972, overlap 1798972 TATCGATTAGGAACA AAAAAACCGGC ACT GCCGGTTTTTA TTATTCGCAAGCTAA TERM 1724 1798984 - 1798972 - T 100 -10.5 -5.84381 | opp_overlap 1798972 1798966 TTAGGAACAAAAAAA CCGGC ACT GCCGG TTTTTATTATTCGCA TERM 1725 1798972 - 1798984 + T 100 -10.5 -5.29445 | opp_overlap 1798972, overlap 1798966 TTAGGAACAAAAAAA CCGGC ACT GCCGG TTTTTATTATTCGCA Shew_1567 1799227 - 1799009 - | translation initiation factor IF-1 TERM 1726 1799318 - 1799333 + r 76 -4 -5.1471 | GTGTTCGTTATCTGG GCAAAT ATCT GTTTGC TTTATTTTTTCTCAT Shew_1568 1800062 - 1799358 - | arginyl-tRNA-protein transferase aat 1800762 - 1800052 - | leucyl/phenylalanyl-tRNA--protein transferase Shew_1570 1800815 - 1801306 + | 17 kDa surface antigen TERM 1727 1801403 - 1801366 - T 84 -12.9 -2.50077 | opp_overlap 1801377, overlap 1801370 1801377 GTCGTATAAAAGCAT TCAACAAAAAAGGAGCC ATGG GGCTCCTTTTTTTATGA CGATACGTTCTTATA TERM 1728 1801399 - 1801370 - T 86 -12.3 -3.20109 | opp_overlap 1801377, overlap 1801366 1801377 TATAAAAGCATTCAA CAAAAAAGGAGCC ATGG GGCTCCTTTTTTT ATGACGATACGTTCT TERM 1729 1801392 - 1801377 - T 100 -10.4 -5.4833 | opp_overlap 1801377, overlap 1801370 1801366 GCATTCAACAAAAAA GGAGCC ATGG GGCTCC TTTTTTTATGACGAT TERM 1730 1801377 - 1801392 + T 100 -10.4 -5.61596 | opp_overlap 1801377 1801370 1801366 GCATTCAACAAAAAA GGAGCC ATGG GGCTCC TTTTTTTATGACGAT Shew_1571 1801794 - 1801435 - | hypothetical protein TERM 1731 1801569 - 1801587 + g 76 -5.2 -4.7416 | overlap 1801562 1801570 TCGCAGGTGCGGCTT TCTTAGGC GCT GCCTTAGG TTTTTCCGCTTTTGC Shew_1572 1802005 - 1802757 + | hypothetical protein TERM 1732 1802826 - 1802799 - T 100 -12.8 -4.09685 | opp_overlap 1802804, overlap 1802804 GTCGAGTTTCTAAAA GAAAAGGCCGCT AGTT AGCGGCCTTTTT TGTGTCTTCTCGGTT TERM 1733 1802821 - 1802804 - T 100 -12.7 -5.07652 | opp_overlap 1802804, overlap 1802799 GTTTCTAAAAGAAAA GGCCGCT AGTT AGCGGCC TTTTTTGTGTCTTCT TERM 1734 1802804 - 1802821 + T 100 -12.7 -5.48787 | opp_overlap 1802804 1802799 GTTTCTAAAAGAAAA GGCCGCT AGTT AGCGGCC TTTTTTGTGTCTTCT metG 1804882 - 1802861 - | methionyl-tRNA synthetase TERM 1735 1802906 - 1802917 + g 78 -4.4 -5.00616 | overlap 1802892 TTCATGTGGCTCCAG GATC CACA GATC TTTTTTACCAGGACC TERM 1736 1805612 - 1805646 + G 70 -12 -2.52543 | overlap 1805639 ATCGTCAGCGGTGAT GAGGCCGCCGTATGGC GCG GCCCTATGGCGGCCGG TGCATTGGCGCAGCT Shew_1574 1805042 - 1806154 + | ATP-binding Mrp/Nbp35 family protein Shew_1575 1806167 - 1806802 + | uridine kinase dcd 1806830 - 1807414 + | deoxycytidine triphosphate deaminase Shew_1577 1807414 - 1808247 + | aminotransferase, class IV Shew_1578 1808244 - 1809251 + | aminodeoxychorismate lyase TERM 1737 1809391 - 1809349 - g 95 -14.9 -3.90766 | gap 1, overlap 1809344 1809350 TATCGAGAAACATAA CGGCGTACCGCCCGTGTGCA CCCG TGAAC-CAGGCGGCACGCCA CTGGCAGAGCGCATT TERM 1738 1809390 - 1809350 - g 83 -16.2 -2.93737 | gap 1, overlap 1809349 1809344 ATCGAGAAACATAAC GGCGTACCGCCCGTGTGCA CCCG TGAAC-CAGGCGGCACGCC ACTGGCAGAGCGCAT Shew_1579 1809248 - 1809880 + | dTMP kinase Shew_1580 1809898 - 1810812 + | DNA polymerase III, delta prime subunit Shew_1581 1810819 - 1811145 + | type IV pilus assembly PilZ Shew_1582 1811190 - 1811978 + | TatD family hydrolase TERM 1739 1812150 - 1812121 - T 100 -10.1 -5.75478 | AAGTAGATAAAAAAA GACCCAAAACTAT TCCA ATTGTTCTGGGTC TAGGGGAATGGCTCT yebU 1813790 - 1812330 - | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 1740 1814507 - 1814532 + G 71 -4.7 -4.52857 | gap 1, overlap 1814509 1814523 GATATGCGGCCTTGA TGCTGGCGGCGG TAT CTGCC-CTAGTA TTTTATCTGGGCACT Shew_1584 1813879 - 1815105 + | nucleoside recognition domain-containing protein TERM 1741 1815200 - 1815167 - T 86 -13.1 -3.0894 | opp_overlap 1815170 1815197, overlap 1815170 GAATTAGTGACGCAA GTAGGCCGCTAGGGG GGAT CTCCTAACGGCCTTC AATGGAAGATATTGT TERM 1742 1815170 - 1815197 + T 86 -13.4 -3.05935 | opp_overlap 1815170 1815167 TTAGTGACGCAAGTA GGCCGCTAGGGG GGAT CTCCTAACGGCC TTCAATGGAAGATAT TERM 1743 1815197 - 1815170 - T 85 -13.4 -2.75712 | opp_overlap 1815170, overlap 1815167 TTAGTGACGCAAGTA GGCCGCTAGGGG GGAT CTCCTAACGGCC TTCAATGGAAGATAT Shew_1585 1816120 - 1815221 - | hypothetical protein TERM 1744 1815903 - 1815881 - G 71 -4.8 -4.56597 | opp_overlap 1815881, overlap 1815883 GCTGGCCTCGAAAAA TGGCAGAAAC TGC GATTCTTCCA ATGCCAAGTCTTCTT TERM 1745 1816320 - 1816296 - R 100 -15.1 -5.42975 | opp_overlap 1816293 1816296 TTACAGAAATAAAAA GGCTCCCGATA GTG TATCGAGAGCC TGGTATTCAAGCTGG TERM 1746 1816296 - 1816320 + r 85 -12.9 -2.74523 | opp_overlap 1816296, overlap 1816293 TTACAGAAATAAAAA GGCTCCCGATA GTG TATCGAGAGCC TGGTATTCAAGCTGG Shew_1586 1816714 - 1816343 - | diacylglycerol kinase TERM 1747 1817149 - 1817118 - g 70 -10.1 -3.4252 | overlap 1817119 1817121 1817135 CTTGAGCCAGCACAA CGACTCCCGGGCA TACAGT TGGCCGGGAGTCT CGAGGCCGACCGACC TERM 1748 1817148 - 1817119 - g 75 -13.6 -2.65298 | overlap 1817118 1817121 1817135 TTGAGCCAGCACAAC GACTCCCGGGCA TACAGT TGGCCGGGAGTC TCGAGGCCGACCGAC Shew_1587 1817076 - 1817888 + | DNA ligase Shew_1588 1817918 - 1818382 + | protein tyrosine phosphatase rbgA 1819494 - 1818553 - | ribosomal biogenesis GTPase TERM 1749 1819227 - 1819261 + g 71 -11.5 -3.14051 | gap 1, overlap 1819234 GCACCTGGGCAGCCT GCAAGGTGGTGATGGC CATC GCCTTTACC-CCTTGC TCTTGCTCCAGATAG TERM 1750 1819560 - 1819589 + r 86 -12.3 -3.14463 | opp_overlap 1819562 1819568, overlap 1819562 1819568 GGCTTAAAAATCATA AATAAAAAGCGCC CTGA GGCGCTTTTTATC TTAGTCGAGGAGGTT TERM 1751 1819562 - 1819587 + r 95 -14.9 -3.13403 | opp_overlap 1819562 1819568, overlap 1819560 1819568 CTTAAAAATCATAAA TAAAAAGCGCC CTGA GGCGCTTTTTA TCTTAGTCGAGGAGG TERM 1752 1819587 - 1819562 - R 100 -14.9 -4.2687 | opp_overlap 1819562 1819560 1819568, overlap 1819568 CTTAAAAATCATAAA TAAAAAGCGCC CTGA GGCGCTTTTTA TCTTAGTCGAGGAGG TERM 1753 1819568 - 1819581 + r 93 -9.5 -5.1244 | opp_overlap 1819562 1819568, overlap 1819562 1819560 AATCATAAATAAAAA GCGCC CTGA GGCGC TTTTTATCTTAGTCG TERM 1754 1819581 - 1819568 - R 100 -9.5 -5.4182 | opp_overlap 1819568 1819562 1819560, overlap 1819562 AATCATAAATAAAAA GCGCC CTGA GGCGC TTTTTATCTTAGTCG Shew_1590 1820442 - 1819603 - | 2OG-Fe(II) oxygenase TERM 1755 1821056 - 1821039 - g 90 -8.5 -5.03994 | opp_overlap 1821038 CCTGACAGACAAAAA TTTACGC CACT GCGTAAA CTCTGTCTCCATGGT Shew_1591 1820734 - 1821651 + | bifunctional methionine sulfoxide reductase B/A protein TERM 1756 1821680 - 1821652 - T 95 -13.3 -3.28712 | opp_overlap 1821659, overlap 1821659 TCGGGCGGCGGATAA TAAAAAAGGCGCA TCA TGCGCCTTTTTTG TTGCCAAGGTTTAGC TERM 1757 1821673 - 1821659 - T 100 -11.4 -5.55769 | opp_overlap 1821659, overlap 1821652 GCGGATAATAAAAAA GGCGCA TCA TGCGCC TTTTTTGTTGCCAAG TERM 1758 1821659 - 1821673 + T 100 -11.4 -5.4505 | opp_overlap 1821659 1821652 GCGGATAATAAAAAA GGCGCA TCA TGCGCC TTTTTTGTTGCCAAG Shew_1592 1823278 - 1821719 - | sulphate transporter TERM 1759 1822010 - 1821998 - G 81 -3.3 -5.28481 | GACCGAACCAAAAAA CAGCG GGC CGTTG AGCTTATAAACTTTC TERM 1760 1822337 - 1822307 - G 71 -7.4 -4.06384 | GCCGAACAGGATAAA GGTGAGCAGGGCGA TGG CCGCCGTGATCCCC GAGAGTCTGCCGCGT TERM 1761 1823379 - 1823360 - R 100 -12.2 -5.62288 | opp_overlap 1823360 CCAATAAAATAAAAA GCCATGCA TTAT TGCATGGC TTTTTTGACTTAAGG TERM 1762 1823360 - 1823379 + r 100 -12.2 -5.15969 | opp_overlap 1823360 CCAATAAAATAAAAA GCCATGCA TTAT TGCATGGC TTTTTTGACTTAAGG Shew_1593 1826792 - 1823406 - | ribonuclease TERM 1763 1826616 - 1826596 - G 77 -9.7 -3.91911 | TTGAGGGGAAGGAAA CCATGACGC TCG GCGCCATAG TCGACGAAAGCCGCT Shew_1594 1827362 - 1828351 + | RluA family pseudouridine synthase TERM 1764 1828438 - 1828412 - g 71 -6.5 -4.25283 | overlap 1828414 ACTCGGTCAGCAAAA TAGTGGCCTGC ATGCA GCAGACCGCCA GGGAGCTGAGCATGA Shew_1595 1828348 - 1829007 + | HAD family hydrolase Shew_1596 1830361 - 1828988 - | diguanylate cyclase with PAS/PAC sensor TERM 1765 1830334 - 1830305 - G 74 -2.8 -5.00616 | overlap 1830307 GGCTCGCTGAAAAAA TCGCTCGTCG ATACAGGGGG CGGCGAGCAA GGCAAGCGCTTCTTC TERM 1766 1830534 - 1830548 + r 82 -10 -3.99405 | TGCGGGCTGCGGTAT GGCCTT GCG AAGGCC TTTATCCTGGATTCG TERM 1767 1830562 - 1830600 + r 73 -8.9 -3.42699 | CCTTTATCCTGGATT CGAATCTGCCAACCG TGGTGAAAC CGGTTGGCACATACG TTCTGATGAATAAGT Shew_1597 1831301 - 1830705 - | maf protein TERM 1768 1831230 - 1831241 + g 75 -5.8 -4.56597 | opp_overlap 1831230 GGCGCAGGTGTCAAA CTCG ATAG CGAG TTTTTGAAGCAAAGA Shew_1598 1831732 - 1832256 + | hypothetical protein rpmF 1832274 - 1832444 + | 50S ribosomal protein L32 TERM 1769 1832540 - 1832519 - g 79 -14.5 -2.78384 | opp_overlap 1832519 1832514 GGCCCCCGCATCACA GTGCCTGCA ACCC TGCAGGCAC TTCGCTTATATCCCT TERM 1770 1832519 - 1832540 + G 83 -14.5 -3.26717 | opp_overlap 1832519, overlap 1832514 GGCCCCCGCATCACA GTGCCTGCA ACCC TGCAGGCAC TTCGCTTATATCCCT TERM 1771 1833141 - 1833153 + G 73 -5.5 -4.63486 | overlap 1833137 1833142 GTAATGTCGACGTCA TCGTC TGT GACGG TTTTGTTGGCAACAT Shew_1600 1832459 - 1833487 + | putative glycerol-3-phosphate acyltransferase PlsX Shew_1601 1833497 - 1834456 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1772 1835147 - 1835177 + G 73 -12.6 -2.64726 | overlap 1835146 TGAACTGGCCAAGGC GCTGGACGCGCTAA GCT TTAGTGCGCCTAGC ATTCCTGTTGTCAAC Shew_1602 1834503 - 1835429 + | malonyl CoA-acyl carrier protein transacylase TERM 1773 1835954 - 1835941 - g 70 -5.3 -4.42653 | opp_overlap 1835930 1835946 ATTGGATTTACAAAA TCTCT TGCA AGAGA GGTTGCATCTCGTCA Shew_1603 1835440 - 1836186 + | 3-oxoacyl-(acyl-carrier-protein) reductase TERM 1774 1836556 - 1836532 - g 74 -7.2 -4.24123 | TGAAGAAGCTGAAAA GATCACTACT GTTCA AGCAGCGATC GATTACGTTTCTAAG Shew_1604 1836347 - 1836580 + | acyl carrier protein TERM 1775 1836592 - 1836625 + F 100 -18.3 -3.55444 | opp_overlap 1836598, overlap 1836598 GTAATACTGAATTCT CTAAAACAGGCGGCA ATTA TGCCGCCTGTTTTTG TTTGAGGGCTAGCAG TERM 1776 1836598 - 1836619 + F 100 -15.9 -5.27335 | opp_overlap 1836598, overlap 1836592 CTGAATTCTCTAAAA CAGGCGGCA ATTA TGCCGCCTG TTTTTGTTTGAGGGC TERM 1777 1836619 - 1836598 - f 100 -15.9 -4.11484 | opp_overlap 1836598 1836592 CTGAATTCTCTAAAA CAGGCGGCA ATTA TGCCGCCTG TTTTTGTTTGAGGGC Shew_1605 1836749 - 1837990 + | beta-ketoacyl synthase TERM 1778 1838013 - 1838027 + F 100 -7.1 -5.88197 | opp_overlap 1838013, overlap 1838006 TTTTTAAGTAAAAAA GCACC TTAAT GGTGC TTTTTTTATGTTTGA TERM 1779 1838027 - 1838013 - f 91 -7.1 -5.26875 | opp_overlap 1838013 1838006 TTTTTAAGTAAAAAA GCACC TTAAT GGTGC TTTTTTTATGTTTGA Shew_1606 1838176 - 1838508 + | hypothetical protein Shew_1607 1838586 - 1839074 + | thioesterase superfamily protein TERM 1780 1839220 - 1839246 + G 72 -10.8 -3.40403 | opp_overlap 1839227 CCAGGGGCAGCTAGT GGCTAAACGGCA GCA TGCCGTGCAGCC TTATCGTGACGGCGC TERM 1781 1840664 - 1840649 - g 72 -2.6 -4.87803 | gap 1, overlap 1840650 TACCCCCAAATAAAA CCTTTCT TCA AGA-AGG TGAACAGGCAGTATT Shew_1608 1839098 - 1840681 + | carbohydrate kinase, FGGY Shew_1609 1840705 - 1841580 + | 6-phosphogluconate dehydrogenase, NAD-binding TERM 1782 1841648 - 1841620 - T 100 -13.3 -3.48276 | opp_overlap 1841626, overlap 1841626 CTGCTTGTTAGATAA TAAAAAGGACTGC CAA GCAGTCCTTTTTT GATCCTTAAGGTGTG TERM 1783 1841642 - 1841626 - T 100 -12.3 -5.24796 | opp_overlap 1841626, overlap 1841620 GTTAGATAATAAAAA GGACTGC CAA GCAGTCC TTTTTTGATCCTTAA TERM 1784 1841626 - 1841642 + T 100 -12.3 -5.2189 | opp_overlap 1841626 1841620 GTTAGATAATAAAAA GGACTGC CAA GCAGTCC TTTTTTGATCCTTAA Shew_1610 1842564 - 1841674 - | cytidine deaminase sbcB 1844130 - 1842682 - | exonuclease I TERM 1785 1843763 - 1843744 - G 89 -6.4 -5.17353 | overlap 1843746 ATAGGGATCAAAAAA GTTACGGT AGAA ACCGTAGC GGGTCACCTCATCGT Shew_1612 1844259 - 1845077 + | hypothetical protein TERM 1786 1845074 - 1845097 + F 71 -9.6 -3.10474 | opp_overlap 1845074 GATGTTTTTAGACGA CTAGTCGGTT TATG ACCCGACTAG TATTGGAATATTGTA rrmA 1845113 - 1845925 + | 23S rRNA methyltransferase A TERM 1787 1845991 - 1845972 - f 87 -5 -5.40474 | opp_overlap 1845972 ATCCGCTTAAAAAAA CTTAGTGT TTTT ACACGAAG TTTTAGAAGGTTTTT Shew_1614 1846228 - 1846434 + | cold-shock DNA-binding domain-containing protein TERM 1788 1846480 - 1846503 + T 100 -14 -5.71712 | opp_overlap 1846469 1846482 AAAACAGAATTCCAA GAGCTGTGAT GAGT ATCACAGCTC TTTTTTTGTCTGCAA TERM 1789 1846501 - 1846482 - T 76 -10.8 -3.12407 | opp_overlap 1846480, overlap 1846469 AACAGAATTCCAAGA GCTGTGAT GAGT ATCACAGC TCTTTTTTTGTCTGC TERM 1790 1846836 - 1846858 + T 74 -7.8 -4.0641 | opp_overlap 1846840 1846852 GGCGCCGTGCCCTAA GTGACACT CTGCATA AGTGTCAC TTTATATGGGTGACA Shew_1615 1847818 - 1846913 - | ABC transporter-related protein Shew_1616 1848669 - 1847815 - | hypothetical protein TERM 1791 1848562 - 1848581 + g 86 -2.1 -5.53288 | overlap 1848552 1848563 GGCCAGGCCTATCAT GCCTCTT GTGCTA AAGAGGA TTTTTTTCAGTTCGA Shew_1617 1849373 - 1848726 - | hypothetical protein TERM 1792 1849398 - 1849425 + r 84 -8.4 -4.36914 | opp_overlap 1849398 ACCCAGATAAAAAAA GCATAGCCCTGT TATA ACAGAGCCATGC TTTTATGCAAAGACA TERM 1793 1849425 - 1849398 - R 100 -12.8 -5.72616 | opp_overlap 1849398 ACCCAGATAAAAAAA GCATAGCCCTGT TATA ACAGAGCCATGC TTTTATGCAAAGACA Shew_1618 1850306 - 1849473 - | hypothetical protein Shew_1619 1850856 - 1852769 + | arginine decarboxylase TERM 1794 1852793 - 1852823 + F 71 -9 -3.31144 | overlap 1852795 CTAGCCTGTTTCGCC TGGGATCTCGGC TAAGGCT GCCGGGATCCTG TTATACCAATCACGG TERM 1795 1852795 - 1852821 + F 81 -11.6 -3.22475 | overlap 1852793 AGCCTGTTTCGCCTG GGATCTCGGC TAAGGCT GCCGGGATCC TGTTATACCAATCAC TERM 1796 1853190 - 1853154 - g 74 -10.3 -3.5525 | gap 1 AGAGATCCTCTCAAA GCTGAGCA-GTGAGCA GTGCGA TGCTTACCTGCTCAGC GAATCTAGCCTGTTT TERM 1797 1853423 - 1853443 + G 70 -3.4 -4.84311 | gap 1, overlap 1853424 1853425 1853427 ACCGCATAGGCCATT TA-GATGGT CATC ACCATCATA TTTTCTTCTCTGGCA Shew_1620 1853026 - 1853946 + | adenosylmethionine decarboxylase Shew_1621 1853975 - 1854898 + | agmatinase Shew_1622 1854926 - 1855582 + | pyridoxamine 5'-phosphate oxidase TERM 1798 1855626 - 1855610 - T 100 -13.7 -5.93809 | opp_overlap 1855610 TCGCGATAAAAAAAA CCACCGC AAT GCGGTGG TTTTTTTGTCTTAGG TERM 1799 1855610 - 1855626 + T 100 -13.7 -5.80817 | opp_overlap 1855610 TCGCGATAAAAAAAA CCACCGC AAT GCGGTGG TTTTTTTGTCTTAGG Shew_1623 1856424 - 1855648 - | hypothetical protein cysB 1856663 - 1857637 + | transcriptional regulator CysB TERM 1800 1857679 - 1857713 + T 100 -13.9 -4.00348 | gap 1, opp_overlap 1857689, overlap 1857689 AAGCTGATGTGTAGC CATAAAAAAACTCGCC CTAG GGCGAG-TTTTTTATG TTTCATTCATTGCCG TERM 1801 1857704 - 1857689 - T 100 -10.4 -5.64274 | opp_overlap 1857679 1857689 GTAGCCATAAAAAAA CTCGCC CTAG GGCGAG TTTTTTATGTTTCAT TERM 1802 1857689 - 1857704 + T 100 -10.4 -5.5762 | opp_overlap 1857689, overlap 1857679 GTAGCCATAAAAAAA CTCGCC CTAG GGCGAG TTTTTTATGTTTCAT Shew_1625 1859106 - 1857730 - | L-serine dehydratase 1 TERM 1803 1857758 - 1857770 + g 81 -10.5 -4.04295 | ATGTTAACCGCCAGG CCGCC CTT GGCGG TTTCCTTGTACTTGC Shew_1626 1859477 - 1860478 + | beta-hexosaminidase Shew_1627 1860554 - 1861096 + | hypothetical protein TERM 1804 1861116 - 1861131 + F 100 -10.4 -5.71712 | opp_overlap 1861116 ATTCGTACCTAACAA GGAGCC AGCT GGCTCC TTTTTTTATGTGCAG TERM 1805 1861131 - 1861116 - f 78 -10.4 -3.67775 | opp_overlap 1861116 ATTCGTACCTAACAA GGAGCC AGCT GGCTCC TTTTTTTATGTGCAG TERM 1806 1861504 - 1861516 + F 76 -7.7 -4.17089 | opp_overlap 1861503 ATATTGCTACATGAT GGTCT TAC AGACC TTTTCCCAGTTTGCG TERM 1807 1861546 - 1861571 + F 100 -6.2 -6.08563 | GTATGTCGCCCGATG CAGCTAACCA CTTTAT TAGTTAGCTG TTTTTTTTGTCTATT TERM 1808 1861882 - 1861906 + G 86 -7.1 -5.09685 | opp_overlap 1861881 1861883, overlap 1861883 TGCTGGTGGAGGAAG ACGAGGCAGAT GAG ATCTACCTCGA TTTTTCTGTCTATTA TERM 1809 1861883 - 1861905 + G 74 -10.6 -3.64184 | opp_overlap 1861883 1861881, overlap 1861882 GCTGGTGGAGGAAGA CGAGGCAGAT GAG ATCTACCTCG ATTTTTCTGTCTATT TERM 1810 1861905 - 1861883 - g 75 -12.8 -3.13403 | opp_overlap 1861882 1861883, overlap 1861881 GCTGGTGGAGGAAGA CGAGGCAGAT GAG ATCTACCTCG ATTTTTCTGTCTATT Shew_1628 1861653 - 1861922 + | acylphosphatase Shew_1629 1862900 - 1861962 - | hypothetical protein Shew_1630 1866375 - 1862893 - | transcription-repair coupling factor Shew_1631 1867032 - 1866451 - | hypothetical protein TERM 1811 1867507 - 1867497 - g 73 -5.4 -4.59773 | CCCGAGCTTGAAAAA GACA ATC TGTC CCGTCTGAACCGTCA Shew_1632 1867128 - 1868360 + | LolC/E family lipoprotein releasing system, transmembrane protein Shew_1633 1868364 - 1869065 + | lipoprotein releasing system, ATP-binding protein Shew_1634 1869062 - 1870315 + | LolC/E family lipoprotein releasing system, transmembrane protein Shew_1635 1871698 - 1870343 - | diguanylate cyclase TERM 1812 1870387 - 1870421 + g 77 -12.2 -3.31792 | overlap 1870407 GTTGATACATCCGCT TGTCGGCATCTGAGAG CAA CTCTTTGATGTCGGCA TTCTGACCATCATAG TERM 1813 1871155 - 1871171 + g 71 -4.3 -4.63527 | overlap 1871158 TCACTACGCTCACCC CGCCCCA GTA TTGGGTG TTTTTGGGGTAGTCG TERM 1814 1871539 - 1871561 + g 70 -5.4 -4.49937 | overlap 1871540 CGAAGTTAAAGCGGA TCAGCGCCAG GTT CTTGCGCAGG TTTTCCTCTTCTTGC TERM 1815 1871694 - 1871710 + g 84 -3 -5.4111 | gap 1 CTATTTGAATTTAAG TGCATGG CCTT CC-TGCA TTTTTTGTGATTATT Shew_1636 1872537 - 1872031 - | hypothetical protein TERM 1816 1872745 - 1872755 + G 73 -5.4 -4.66609 | GAGTCTATTTTGCCA CCAA CTT TTGG TTTTTACGTCCGATA Shew_1637 1872569 - 1874854 + | DNA internalization-related competence protein ComEC/Rec2 TERM 1817 1875004 - 1875016 + G 70 -3.3 -4.70117 | AGTGCTTTACGGCTT GGTGG ACG CAACC TTTATTTATTCAATT TERM 1818 1876207 - 1876187 - g 73 -12.5 -2.69545 | opp_overlap 1876181, overlap 1876186 CTGAGAGATTACAAG CTGGCGGCG CTG CGCCGTCAG GTGGCATTGGTGTCA Shew_1638 1874888 - 1876702 + | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA Shew_1639 1876708 - 1877724 + | tetraacyldisaccharide 4'-kinase Shew_1640 1877726 - 1877905 + | hypothetical protein TERM 1819 1877968 - 1877996 + F 82 -10.4 -3.95456 | gap 1, opp_overlap 1877970 1877974, overlap 1877972 TATCGCGCGGCAAGC TAG-AGACGTGCC GATT GGCACGTCTTCTG TTTCATCTTCACTTT TERM 1820 1877993 - 1877970 - f 74 -11 -2.52464 | opp_overlap 1877968 1877972, overlap 1877974 TCGCGCGGCAAGCTA GAGACGTGCC GATT GGCACGTCTT CTGTTTCATCTTCAC TERM 1821 1877972 - 1877991 + F 100 -13.6 -3.90045 | opp_overlap 1877970 1877974, overlap 1877968 GCGCGGCAAGCTAGA GACGTGCC GATT GGCACGTC TTCTGTTTCATCTTC TERM 1822 1877989 - 1877974 - f 72 -10.4 -2.94912 | opp_overlap 1877972 1877968, overlap 1877970 GCGGCAAGCTAGAGA CGTGCC GATT GGCACG TCTTCTGTTTCATCT Shew_1641 1878141 - 1878860 + | Mn2+-dependent serine/threonine protein kinase TERM 1823 1879163 - 1879187 + F 79 -9.3 -3.90112 | opp_overlap 1879155, overlap 1879164 CTAGAATGCCCGTGT TCTCTGGGCTG TAG CAGCTTAGAGG TTTAGTTCGAAAGCA TERM 1824 1879164 - 1879186 + F 75 -10.6 -2.93853 | opp_overlap 1879155, overlap 1879163 TAGAATGCCCGTGTT CTCTGGGCTG TAG CAGCTTAGAG GTTTAGTTCGAAAGC Shew_1642 1879360 - 1882428 + | peptidase M11, gametolysin TERM 1825 1882468 - 1882448 - T 100 -16.9 -5.31855 | opp_overlap 1882448 TATCAATAATAAAAA GCCAAGGGC ATC GCCCTTGGC TTTTTTTGTGCGGAG TERM 1826 1882448 - 1882468 + T 100 -16.9 -5.60993 | opp_overlap 1882448 TATCAATAATAAAAA GCCAAGGGC ATC GCCCTTGGC TTTTTTTGTGCGGAG Shew_1643 1884800 - 1882512 - | hypothetical protein Shew_1644 1886140 - 1885352 - | DSBA oxidoreductase Shew_1645 1887544 - 1886174 - | sigma-54 dependent trancsriptional regulator TERM 1827 1886849 - 1886866 + g 77 -9.8 -3.96148 | TATGTATTGCCTGTC GGCGCC GGTGAA GGCGCC TTTCTCATGGCCGAA TERM 1828 1887915 - 1887936 + r 72 -7.2 -4.06864 | opp_overlap 1887915, overlap 1887909 GCTTAGGAAGGAAAA GGCGCAGT ACTTAA ACCGCGCC TTATTCTTCTATAGG TERM 1829 1887936 - 1887915 - R 89 -9.4 -4.45544 | opp_overlap 1887915 1887909 GCTTAGGAAGGAAAA GGCGCAGT ACTTAA ACCGCGCC TTATTCTTCTATAGG Shew_1646 1888899 - 1888021 - | beta-lactamase domain-containing protein TERM 1830 1888976 - 1888948 - R 76 -10.4 -3.32819 | opp_overlap 1888954, overlap 1888954 TATATAGTTGCATAA TAAAAAGGCTGC AAGAA GCAGCCTTTTTT AGTTTGTCTGATTTG TERM 1831 1888970 - 1888954 - R 100 -9.4 -5.18726 | opp_overlap 1888954, overlap 1888948 GTTGCATAATAAAAA GGCTGC AAGAA GCAGCC TTTTTTAGTTTGTCT TERM 1832 1888954 - 1888970 + r 100 -9.4 -5.4387 | opp_overlap 1888948 1888954 GTTGCATAATAAAAA GGCTGC AAGAA GCAGCC TTTTTTAGTTTGTCT Shew_1647 1892058 - 1889011 - | acriflavin resistance protein Shew_1648 1895303 - 1892055 - | acriflavin resistance protein TERM 1833 1892292 - 1892318 + g 76 -5 -4.68424 | GGGACGCAGACGTGA CTTGGCGGCCTC TTC GATGGCGCTGAG TTTTTCGATGCCTTG Shew_1649 1896382 - 1895318 - | RND family efflux transporter MFP subunit TERM 1834 1896258 - 1896284 + g 86 -5.9 -5.04082 | gap 1, overlap 1896253 1896260 TCACCTTGTATGACA GT-CGTCGTTTC AACG GGAACGGCGTAC TTTTCTTCTTCTTTC TERM 1835 1897110 - 1897095 - R 100 -10.4 -5.65177 | opp_overlap 1897095 AGAGGCATAAAAAAA GCACCC CATA GGGTGC TTTTTAAGACTAGGC TERM 1836 1897095 - 1897110 + r 91 -10.4 -4.59773 | opp_overlap 1897095 AGAGGCATAAAAAAA GCACCC CATA GGGTGC TTTTTAAGACTAGGC gltA 1898417 - 1897131 - | type II citrate synthase TERM 1837 1898837 - 1898824 - H 79 -6.7 -4.72127 | CAATAACAAAAATAA TGCTC AATG GAGCA GAGTGAGCAGAACGT Shew_1651 1898830 - 1899225 + | succinate dehydrogenase, cytochrome b subunit TERM 1838 1899239 - 1899262 + G 86 -7.4 -5.00467 | overlap 1899242 AACAAATGCAGCGAG TCTTGGACGC AGTG GCGTTCATGA TTTTATTCTTCTTCG Shew_1652 1899219 - 1899566 + | putative succinate dehydrogenase, hydrophobic subunit TERM 1839 1900542 - 1900554 + G 73 -9.1 -3.91858 | opp_overlap 1900532 1900542 GAGACGCTTGAAGCA CGCCT ACC AGGCG TTTGTGAACTGTCTC sdhA 1899567 - 1901333 + | succinate dehydrogenase flavoprotein subunit sdhB 1901344 - 1902051 + | succinate dehydrogenase iron-sulfur subunit TERM 1840 1902097 - 1902126 + F 89 -9.4 -4.57353 | opp_overlap 1902099, overlap 1902088 ATATAGCTCTTATGA GAGTCACTTCTT CTATGT GAGAAGTGGCTC TTTTATGTAATGGAA kgd 1902267 - 1905089 + | alpha-ketoglutarate decarboxylase TERM 1841 1905587 - 1905563 - g 75 -13.6 -2.56596 | gap 1, opp_overlap 1905559 1905582, overlap 1905559 1905578 1905581 GCCTTCATCAAGTCA GCGCCTGCTGC TAAA GCAGC-GGCGC CAGCCGTTGTTGCGC Shew_1656 1905122 - 1906312 + | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase TERM 1842 1906364 - 1906381 + F 86 -12.7 -3.20991 | CATCACCCCTCGCTA CCGGCTC TATT GAGCCGG TTGGATTAGATTAGA sucC 1906416 - 1907582 + | succinyl-CoA synthetase subunit beta Shew_1658 1907582 - 1908454 + | succinyl-CoA synthetase, alpha subunit TERM 1843 1908509 - 1908481 - T 100 -16.9 -3.78775 | opp_overlap 1908481 1908488, overlap 1908488 GTCTGTAGCATGAAA CAAAAAAGGCGCC TTG GGCGCCTTTTTTA TTACCTATCAAATTT TERM 1844 1908481 - 1908509 + T 95 -14.7 -3.13743 | opp_overlap 1908481 1908488, overlap 1908488 GTCTGTAGCATGAAA CAAAAAAGGCGCC TTG GGCGCCTTTTTTA TTACCTATCAAATTT TERM 1845 1908488 - 1908502 + T 100 -12.8 -5.49234 | opp_overlap 1908481 1908488, overlap 1908481 GCATGAAACAAAAAA GGCGCC TTG GGCGCC TTTTTTATTACCTAT TERM 1846 1908502 - 1908488 - T 100 -12.8 -5.68438 | opp_overlap 1908488 1908481, overlap 1908481 GCATGAAACAAAAAA GGCGCC TTG GGCGCC TTTTTTATTACCTAT Shew_1659 1910213 - 1908540 - | ferredoxin-dependent glutamate synthase Shew_1660 1910434 - 1910934 + | GCN5-related N-acetyltransferase TERM 1847 1911012 - 1910964 - T 95 -11.9 -4.24342 | opp_overlap 1910967 1910975 1910981, overlap 1910975 1910981 CTCTTGAGGAATAAA CCTTAGATAAAGAAAAACCAGCA TGA TGCTGGTTTTTCTTTATCGGCTG TTTGCCTGCGAATTA TERM 1848 1910967 - 1911009 + T 100 -18.8 -2.64144 | opp_overlap 1910964 1910975 1910981, overlap 1910975 1910981 TTGAGGAATAAACCT TAGATAAAGAAAAACCAGCA TGA TGCTGGTTTTTCTTTATCGG CTGTTTGCCTGCGAA TERM 1849 1911001 - 1910975 - T 100 -16.8 -4.07562 | opp_overlap 1910975 1910967 1910981, overlap 1910964 1910981 TAAACCTTAGATAAA GAAAAACCAGCA TGA TGCTGGTTTTTC TTTATCGGCTGTTTG TERM 1850 1910975 - 1911001 + T 100 -16.8 -3.93673 | opp_overlap 1910964 1910975 1910981, overlap 1910967 1910981 TAAACCTTAGATAAA GAAAAACCAGCA TGA TGCTGGTTTTTC TTTATCGGCTGTTTG TERM 1851 1910981 - 1910995 + T 100 -10 -5.38054 | opp_overlap 1910975 1910964 1910981, overlap 1910975 1910967 TTAGATAAAGAAAAA CCAGCA TGA TGCTGG TTTTTCTTTATCGGC TERM 1852 1910995 - 1910981 - T 100 -10 -5.42975 | opp_overlap 1910981 1910975 1910967, overlap 1910975 1910964 TTAGATAAAGAAAAA CCAGCA TGA TGCTGG TTTTTCTTTATCGGC fur 1911456 - 1911025 - | ferric uptake regulator Shew_1662 1911767 - 1912513 + | NAD-dependent deacetylase Shew_1663 1912571 - 1913092 + | hypothetical protein TERM 1853 1913276 - 1913259 - g 71 -11.3 -3.05384 | opp_overlap 1913258 1913256 1913267 GTTGCCGTCACCGAA GGCGATC AGGA GATCGCC ATCTCCTATTGGCGC Shew_1664 1913133 - 1913420 + | hypothetical protein Shew_1665 1913516 - 1914202 + | peptidase S51, dipeptidase E Shew_1666 1915551 - 1914214 - | putative esterase Shew_1667 1915940 - 1917130 + | acetyl-CoA acetyltransferase TERM 1854 1917141 - 1917162 + F 87 -14.5 -2.64803 | overlap 1917137 TGTAATTCCCTTATT TAGGCTCGC GAAA GCGAGCCTA TGCATTTACCCATGA Shew_1668 1917266 - 1918771 + | methylmalonate-semialdehyde dehydrogenase TERM 1855 1918794 - 1918831 + F 79 -12.1 -2.50994 | opp_overlap 1918801, overlap 1918793 1918796 1918801 CAAGAGACCTTGCAA GGTAAAAGCGATAAGGC CGGG GCCGAATCGCTTTTATC ATTACTAGCCTTCAA TERM 1856 1918796 - 1918829 + F 74 -11.1 -2.79023 | opp_overlap 1918801, overlap 1918794 1918793 1918801 AGAGACCTTGCAAGG TAAAAGCGATAAGGC CGGG GCCGAATCGCTTTTA TCATTACTAGCCTTC TERM 1857 1918801 - 1918824 + F 77 -6.6 -4.56607 | opp_overlap 1918801, overlap 1918796 1918794 1918793 CCTTGCAAGGTAAAA GCGATAAGGC CGGG GCCGAATCGC TTTTATCATTACTAG TERM 1858 1918824 - 1918801 - f 72 -6.6 -4.27316 | opp_overlap 1918796 1918794 1918793 1918801 CCTTGCAAGGTAAAA GCGATAAGGC CGGG GCCGAATCGC TTTTATCATTACTAG Shew_1669 1918934 - 1920091 + | butyryl-CoA dehydrogenase Shew_1670 1920107 - 1920880 + | enoyl-CoA hydratase Shew_1671 1920880 - 1922010 + | enoyl-CoA hydratase/isomerase Shew_1672 1922046 - 1922945 + | 3-hydroxyisobutyrate dehydrogenase TERM 1859 1923035 - 1923049 + G 70 -10 -3.39803 | AACTTGCCGCTGCGG GTGCCA AGT TGGCAC TTATCGATGTGGATC fabG 1922950 - 1923708 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1860 1923747 - 1923733 - f 71 -8.5 -3.54129 | opp_overlap 1923733 TATAGTTGTGCGAAA CGGGC CCTGT GCCCG TTTTTTTATGGCGAC TERM 1861 1923733 - 1923747 + F 100 -8.5 -5.60993 | opp_overlap 1923733 TATAGTTGTGCGAAA CGGGC CCTGT GCCCG TTTTTTTATGGCGAC Shew_1674 1923822 - 1924079 + | hypothetical protein TERM 1862 1925427 - 1925451 + G 74 -12.7 -2.74605 | overlap 1925423 1925422 ATCGTCATGTTGCAT GGCGGGCCCAC CTG GCGGGCCAGCC TGAGTTTTCGCCGGG Shew_1675 1924089 - 1926140 + | peptidase S9 prolyl oligopeptidase TERM 1863 1926761 - 1926751 - g 71 -8.2 -3.91144 | overlap 1926752 GTTACACCGCAGAAA GCCG CGC CGGC GAACTGCTGCTGGGT Shew_1676 1926354 - 1927949 + | ABC transporter-related protein TERM 1864 1927968 - 1928009 + T 100 -16.2 -2.71663 | opp_overlap 1927954 1927977, overlap 1927977 ATTAGGTATCTTGCC TAATAAAAAGCCCAAGTG ATTAAA CACTTGGGCTTTTTTTTA TCGTCTAACTTTTTT TERM 1865 1928000 - 1927977 - T 100 -12.5 -5.06414 | opp_overlap 1927968 1927977 CTTGCCTAATAAAAA GCCCAAGTG ATTAAA CACTTGGGC TTTTTTTTATCGTCT TERM 1866 1927977 - 1928000 + T 100 -12.5 -6.00086 | opp_overlap 1927977, overlap 1927968 CTTGCCTAATAAAAA GCCCAAGTG ATTAAA CACTTGGGC TTTTTTTTATCGTCT Shew_1677 1929465 - 1928104 - | leucyl aminopeptidase TERM 1867 1928167 - 1928139 - G 74 -11.8 -3.08934 | CCAGATAGTCGAACA CGGC-GCGAATGCC GAA GGC-TTCGCCGCCG ATAGGGCGACCCGGT Shew_1678 1929966 - 1929538 - | hypothetical protein Shew_1679 1930584 - 1930027 - | TetR family transcriptional regulator Shew_1680 1930713 - 1931183 + | HPP family protein+B94 Shew_1681 1931402 - 1932892 + | diguanylate cyclase with PAS/PAC sensor Shew_1682 1933699 - 1932935 - | ribonuclease H Shew_1683 1934305 - 1933730 - | hypothetical protein Shew_1684 1934933 - 1934337 - | lysine exporter protein LysE/YggA TERM 1868 1934988 - 1935003 + H 91 -6.2 -5.37593 | ATCTCAAGGCTTTTC TTTGCT GACC AGCAAA TTTTTTCATTTCCGA Shew_1685 1935281 - 1938187 + | collagenase TERM 1869 1938253 - 1938235 - f 91 -10.2 -4.74103 | opp_overlap 1938235 TCTTTAAGTTAAAAA CGTCGGCA TCT TGCCGGCG TTTTTTTATCTGCCT TERM 1870 1938235 - 1938253 + F 100 -12.4 -5.72616 | opp_overlap 1938235 TCTTTAAGTTAAAAA CGTCGGCA TCT TGCCGGCG TTTTTTTATCTGCCT Shew_1686 1938497 - 1939174 + | hypothetical protein Shew_1687 1939503 - 1940006 + | hypothetical protein TERM 1871 1940146 - 1940174 + T 100 -12.3 -4.4715 | opp_overlap 1940148, overlap 1940148 GCACGAGTCGGAAAA AAGCGCCGCCGGG TAA CTGGGCGGCGCTC TTTTATCGGTTAGAA TERM 1872 1940148 - 1940172 + T 100 -14.9 -3.84304 | opp_overlap 1940148, overlap 1940146 ACGAGTCGGAAAAAA GCGCCGCCGGG TAA CTGGGCGGCGC TCTTTTATCGGTTAG TERM 1873 1940172 - 1940148 - T 100 -12.7 -5.03715 | opp_overlap 1940148 1940146 ACGAGTCGGAAAAAA GCGCCGCCGGG TAA CTGGGCGGCGC TCTTTTATCGGTTAG Shew_1688 1942316 - 1940184 - | TonB-dependent receptor TERM 1874 1942635 - 1942609 - R 84 -9.4 -4.2558 | overlap 1942610 GATTGGCGATGAAAA TGCCTGCATAAC TTA GATATGCAGGCG CGGGCATCTGAGTCA TERM 1875 1942634 - 1942610 - R 91 -12.9 -3.15027 | overlap 1942609 ATTGGCGATGAAAAT GCCTGCATAAC TTA GATATGCAGGC GCGGGCATCTGAGTC Shew_1689 1943484 - 1942663 - | hypothetical protein TERM 1876 1943441 - 1943462 + g 74 -2.9 -4.8543 | TAATTGGCCAGGCCC TGCTCATCG AGCC TGGTGCGCA TTTTTCTCAAGGTTC TERM 1877 1943735 - 1943754 + H 77 -7 -4.48743 | opp_overlap 1943734 1943735, overlap 1943725 TCATGGCAACCAAAC GCCTGCCC AGCG GGGGGGGC TTTGTTTGCACTTTT TERM 1878 1944292 - 1944303 + H 82 -7.2 -4.60487 | opp_overlap 1944292, overlap 1944283 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGGTGGTA TERM 1879 1944303 - 1944292 - H 72 -7.2 -4.09511 | opp_overlap 1944292 1944283 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGGTGGTA TERM 1880 1945309 - 1945290 - g 72 -2.2 -4.87665 | gap 1, overlap 1945292 1945293 CCGTATTGAGAAAAA TATC-GGAT CAC ATCCAGACA TAGATGCGTTGCCAT Shew_1690 1944445 - 1945332 + | hypothetical protein TERM 1881 1945547 - 1945532 - g 85 -4.7 -5.22481 | TATAAAGAAACAAAA GCTCT TGCAAT AGAGC ATGCTCAAAAGGCCG Shew_1691 1945421 - 1945909 + | hypothetical protein Shew_1692 1946022 - 1946534 + | hypothetical protein TERM 1882 1947511 - 1947501 - g 70 -5.4 -4.42765 | TCCGAAAAAAGCAAA TTCC AAG GGAA AACATTCACTACAGA Shew_1693 1946595 - 1947542 + | hypothetical protein TERM 1883 1947614 - 1947557 - f 84 -8.6 -4.38114 | gap 3, opp_overlap 1947579 1947602 1947609, overlap 1947558 1947561 1947579 AAAATTTATAACAAA GCCAGCCAGAGGGACCCAAAAACCACCGC TTC GCTCTGGTTTTTCGG-CCC-CT-GCTAGC GGCGTTAGCTGTACT TERM 1884 1947616 - 1947558 - f 91 -13.3 -3.21242 | opp_overlap 1947579 1947602 1947609, overlap 1947557 1947561 1947579 AAATTTATAACAAAG CCAGCCAG-AGGGACCCAAAAACCACCGC TTC GCTCTGGTTTTTCGGCCCCTGCTAGC-GG CGTTAGCTGTACTGA TERM 1885 1947614 - 1947561 - f 89 -14.7 -2.78523 | gap 1, opp_overlap 1947579 1947602 1947609, overlap 1947557 1947558 1947579 TTTATAACAAAGCCA GCCAG-AGGGACCCAAAAACCACCGC TTC GCTCTGGTTTTTCGGCCCCTGCTAGC GGCGTTAGCTGTACT TERM 1886 1948256 - 1948266 + G 77 -3.2 -5.1675 | opp_overlap 1948249 1948232, overlap 1948232 CACGATAACCCTGAT GAGG AGG CTTC TTTTTTGCTCAGTGC Shew_1694 1948145 - 1948657 + | hypothetical protein Shew_1695 1948750 - 1949097 + | hypothetical protein TERM 1887 1949441 - 1949422 - f 100 -16.4 -6.02914 | TGCAGATAAAAAAAA GCCGCGGC GGGC GCCGCGGC AATGACCTCATCCAG Shew_1696 1949748 - 1950644 + | hypothetical protein TERM 1888 1950651 - 1950636 - T 91 -10.4 -4.7497 | opp_overlap 1950636 TCCAGGCACGAAAAA GCGGCA TGAC TGCCGC TTTTTTCTTGAACTA TERM 1889 1950636 - 1950651 + T 100 -10.4 -5.46657 | opp_overlap 1950636 TCCAGGCACGAAAAA GCGGCA TGAC TGCCGC TTTTTTCTTGAACTA Shew_1697 1951193 - 1950696 - | amino acid-binding ACT domain-containing protein Shew_1698 1951473 - 1953731 + | binding-protein-dependent transport systems inner membrane component Shew_1699 1953792 - 1955444 + | phosphate ABC transporter, inner membrane subunit PstA TERM 1890 1956329 - 1956307 - g 79 -2.6 -5.29445 | GCCGAAGAAGAAAAA GACCGAAGAT TAT ATCACGGGTC GTTACGGTTAATTGG Shew_1700 1955522 - 1956340 + | phosphate ABC transporter, ATPase subunit Shew_1701 1956389 - 1957090 + | transcriptional regulator PhoU TERM 1891 1957140 - 1957115 - f 80 -10.5 -3.73224 | opp_overlap 1957120, overlap 1957120 TGAGTCTTCATTAAA GAAAAGCAGCC TAAG GGCTGCTTTTT TGTGTCCGTTATACT TERM 1892 1957120 - 1957135 + F 100 -10.4 -5.38951 | opp_overlap 1957120 1957115 CTTCATTAAAGAAAA GCAGCC TAAG GGCTGC TTTTTTGTGTCCGTT TERM 1893 1957135 - 1957120 - f 93 -10.4 -4.93877 | opp_overlap 1957120, overlap 1957115 CTTCATTAAAGAAAA GCAGCC TAAG GGCTGC TTTTTTGTGTCCGTT TERM 1894 1957585 - 1957596 + F 72 -3.6 -4.92314 | TTTTCTATCTAACAT GGTG TGTT CGCC TTTTTATGAGTTGGT Shew_1702 1957602 - 1957907 + | TPR repeat-containing protein Shew_1703 1957950 - 1958477 + | hypothetical protein TERM 1895 1958678 - 1958653 - f 74 -10.5 -3.17723 | opp_overlap 1958658, overlap 1958658 TGAGTTTCAAGTTAA GAAAAGCAGCC TAAG GGCTGCTTTTT TGTGTCCGTTTTTGG TERM 1896 1958673 - 1958658 - f 91 -10.4 -4.72029 | opp_overlap 1958658, overlap 1958653 TTCAAGTTAAGAAAA GCAGCC TAAG GGCTGC TTTTTTGTGTCCGTT TERM 1897 1958658 - 1958673 + F 100 -10.4 -5.38951 | opp_overlap 1958658 1958653 TTCAAGTTAAGAAAA GCAGCC TAAG GGCTGC TTTTTTGTGTCCGTT TERM 1898 1959254 - 1959273 + G 88 -3.4 -5.63517 | overlap 1959244 1959255 TGCTGGTGCTGGTAG CGGCGCTG ATAT TGGCGCCA TTTTTTATTTAACAG Shew_1704 1958821 - 1959285 + | hypothetical protein Shew_1705 1959298 - 1959663 + | hypothetical protein Shew_1706 1959756 - 1960148 + | glutathione-dependent formaldehyde-activating, GFA TERM 1899 1960806 - 1960828 + G 79 -4 -5.09426 | overlap 1960808 TAAGCATAGCTTATG GCCCATTCGC GGC GCAGATGGAC TTTTTTACCATTGCC Shew_1707 1960484 - 1961410 + | hypothetical protein Shew_1708 1961524 - 1962102 + | hypothetical protein Shew_1709 1962233 - 1962598 + | hypothetical protein Shew_1710 1962854 - 1962609 - | hypothetical protein TERM 1900 1962680 - 1962694 + g 72 -2.1 -4.92777 | gap 1, overlap 1962669 1962667 1962682 GACGGCTGATGATCT GCTGGT TTTC ACC-GC TTTTTCCTTGCTGTT TERM 1901 1963470 - 1963457 - g 74 -6.7 -4.3739 | GAGCGTTCCATAAAA GGCTT CGTA AAGCC AAACGAGTTCGAGCA Shew_1711 1963016 - 1964173 + | methyl-accepting chemotaxis protein TERM 1902 1964242 - 1964267 + F 90 -9 -4.88293 | gap 1, opp_overlap 1964242, overlap 1964245 TTGGTTGACAATTAA CGCCCGGCGGT CGATC ATCGCCGG-CG TTTGTTTTTAGCCTT TERM 1903 1964245 - 1964265 + F 71 -10.4 -2.69725 | opp_overlap 1964242, overlap 1964242 GTTGACAATTAACGC CCGGCGGT CGATC ATCGCCGG CGTTTGTTTTTAGCC TERM 1904 1965015 - 1965064 + G 77 -9.7 -3.87505 | overlap 1965017 CTGCATCTCAGTTTG CTGCGCGGCGCGGCCAAGGCGAG AACT CGCGCCTTAGCGGTGGCGCCCTG TTGTTATCATCTGAT TERM 1905 1965017 - 1965062 + G 72 -10.9 -3.51879 | overlap 1965015 GCATCTCAGTTTGCT GCGCGGCGCGGCCAAGGCGAG AACT CGCGCCTTAGCGGTGGCGCCC TGTTGTTATCATCTG Shew_1712 1964325 - 1965611 + | hypothetical protein TERM 1906 1965815 - 1965800 - f 83 -6 -5.03314 | opp_overlap 1965801, overlap 1965801 TCGATGTCGAAAAAA GCCGCC CTAT GGCGGT TTTTTATTGAATCAT TERM 1907 1965814 - 1965801 - f 77 -9.5 -3.61506 | opp_overlap 1965801, overlap 1965800 CGATGTCGAAAAAAG CCGCC CTAT GGCGG TTTTTTATTGAATCA TERM 1908 1965801 - 1965814 + F 100 -9.5 -5.4833 | opp_overlap 1965801 1965800 CGATGTCGAAAAAAG CCGCC CTAT GGCGG TTTTTTATTGAATCA Shew_1713 1965922 - 1966971 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1909 1967032 - 1967007 - f 80 -11.7 -2.90725 | overlap 1967002 TGAAAGCACAGCATA GGGGCGACGCC GAGG GGCGGCGCCCA CTTAACGCATAATCA Shew_1714 1967062 - 1967934 + | alpha/beta hydrolase fold Shew_1715 1967988 - 1969679 + | peptide synthase Shew_1716 1969686 - 1970807 + | 3-beta hydroxysteroid dehydrogenase/isomerase Shew_1717 1971260 - 1970838 - | globin Shew_1718 1972764 - 1971424 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase Shew_1719 1972914 - 1973966 + | biotin synthase TERM 1910 1974077 - 1974095 + G 80 -11 -3.76224 | opp_overlap 1974076 AGCTACTGACTCAAT CGGTTGGC AGT GCTAACCG TTTAGTGCATCAGGG Shew_1720 1973989 - 1975137 + | 8-amino-7-oxononanoate synthase Shew_1721 1975224 - 1976153 + | methyltransferase type 11 Shew_1722 1976169 - 1976882 + | dethiobiotin synthase Shew_1723 1977199 - 1978062 + | heat shock protein HtpX TERM 1911 1978100 - 1978083 - f 100 -12.7 -4.42386 | opp_overlap 1978083 TGTCGATTGATAAAA CGGGAGC CTAG GCTCCCG TTTTTTGTATCTTTT TERM 1912 1978083 - 1978100 + F 100 -12.7 -5.53079 | opp_overlap 1978083 TGTCGATTGATAAAA CGGGAGC CTAG GCTCCCG TTTTTTGTATCTTTT Shew_1724 1978401 - 1978751 + | cytochrome c3 TERM 1913 1978779 - 1978797 + F 100 -14.6 -5.03994 | opp_overlap 1978779 AGGATAATCGACAAA CACCGGCA ACT TGCCGGTG TTTTTGTATCTGCCA TERM 1914 1978797 - 1978779 - f 100 -14.6 -4.00468 | opp_overlap 1978779 AGGATAATCGACAAA CACCGGCA ACT TGCCGGTG TTTTTGTATCTGCCA Shew_1725 1979156 - 1979707 + | curlin-associated protein TERM 1915 1980110 - 1980141 + G 77 -9.6 -3.89354 | gap 1 GCGCCCGCGTGGTAT TCTTGCA-CTATCCG AAA CAGATAGATGCAAGA TTCTTAATTTCCCCC Shew_1726 1979869 - 1980495 + | LuxR family transcriptional regulator TERM 1916 1980504 - 1980527 + G 70 -10.2 -3.34787 | GCAGTGAAATATCTG GGCCGCTTGC TCCT GTTAGCGGCC TTCTCGGCTCCTGTT Shew_1727 1980492 - 1980959 + | hypothetical protein Shew_1728 1980974 - 1981393 + | curli production assembly/transport component CsgF precursor TERM 1917 1981621 - 1981643 + G 81 -9 -4.42386 | AGTAACTTTTCTACC GCCGTGCCCC AGA GTGGCACCGC TTTTCTCGCTCAGGC Shew_1729 1981396 - 1982244 + | curli production assembly/transport component CsgG TERM 1918 1982348 - 1982365 + F 100 -8.5 -5.49579 | opp_overlap 1982348 ATCTATATTACTTAA GGTTAAC TTTG GTTAACC TTTTATTTTTTATAG Shew_1730 1982460 - 1983026 + | hypothetical protein TERM 1919 1983135 - 1983162 + F 93 -12 -3.9941 | CCCCCGCTTTTCATA GGGTCCACTTGG TTAT CCAGGTGGGCTC TTTCATTCTCCGAGC Shew_1731 1983289 - 1983639 + | histidine triad (HIT) protein Shew_1732 1983670 - 1984167 + | hypothetical protein Shew_1733 1984164 - 1984628 + | thioesterase superfamily protein Shew_1734 1984659 - 1985048 + | hypothetical protein TERM 1920 1985092 - 1985108 + F 100 -10.1 -5.64274 | opp_overlap 1985092 ATGATTTGATGAAAA CGTCAGC AAT GCTGGCG TTTTTTTATGGATCA TERM 1921 1985108 - 1985092 - f 76 -7.9 -4.2717 | opp_overlap 1985092 ATGATTTGATGAAAA CGTCAGC AAT GCTGGCG TTTTTTTATGGATCA Shew_1735 1985370 - 1987511 + | TonB-dependent receptor Shew_1736 1987576 - 1987836 + | hypothetical protein Shew_1737 1987880 - 1988527 + | nicotinamide mononucleotide transporter PnuC Shew_1738 1988567 - 1989706 + | aminoglycoside phosphotransferase Shew_1739 1989977 - 1990567 + | DoxX family protein TERM 1922 1990607 - 1990589 - f 75 -8.9 -3.67976 | opp_overlap 1990589 GTCATCAAGTGTAAA TCCCACT GTTTT AGTGGGA TTTTTTTTGCCAATT TERM 1923 1990589 - 1990607 + F 100 -9.6 -5.77853 | opp_overlap 1990589 GTCATCAAGTGTAAA TCCCACTG TTT TAGTGGGA TTTTTTTTGCCAATT Shew_1740 1990663 - 1991211 + | nitroreductase TERM 1924 1991352 - 1991370 + T 100 -11.7 -5.76633 | CCTAAGTGATTGTGT TGCCCGC TTGCT GCGGGCA TTTTTTTGTCTGTCA Shew_1741 1992200 - 1991469 - | beta-lactamase domain-containing protein Shew_1742 1992858 - 1992241 - | methyl-accepting chemotaxis protein TERM 1925 1992611 - 1992633 + g 70 -12 -2.5655 | opp_overlap 1992614, overlap 1992614 GTTTCGGTGGCGAGA CGACTGGCCT GGT GGGCCAGTTG GTTGATGTCGGTGGC TERM 1926 1992614 - 1992630 + g 70 -10.1 -3.43338 | opp_overlap 1992614, overlap 1992611 TCGGTGGCGAGACGA CTGGCCT GGT GGGCCAG TTGGTTGATGTCGGT Shew_1743 1992935 - 1993438 + | GCN5-related N-acetyltransferase Shew_1744 1993686 - 1994291 + | GCN5-related N-acetyltransferase TERM 1927 1994486 - 1994506 + G 91 -12.5 -4.10925 | overlap 1994503 TTCTTGATGTTAGAT GCCCAGGGC AAT GGCCTGGGC TTTTGCCAGCTCTAT Shew_1745 1994318 - 1994770 + | GCN5-related N-acetyltransferase Shew_1746 1994818 - 1995216 + | hypothetical protein TERM 1928 1995274 - 1995240 - f 79 -11.7 -2.61116 | gap 1, opp_overlap 1995249, overlap 1995249 GTCACAGACAAAATT TCAAGAAAAGAGTGCG CCAG CGCACTCTTTT-TCGA TCATGCATGAAACAG TERM 1929 1995266 - 1995249 - f 100 -11.3 -4.70613 | opp_overlap 1995249, overlap 1995240 AAAATTTCAAGAAAA GAGTGCG CCAG CGCACTC TTTTTCGATCATGCA TERM 1930 1995249 - 1995266 + F 100 -11.3 -4.68593 | opp_overlap 1995249 1995240 AAAATTTCAAGAAAA GAGTGCG CCAG CGCACTC TTTTTCGATCATGCA TERM 1931 1995692 - 1995727 + G 78 -4.6 -4.86001 | TGTTTCAGTGGATCT TCTTCGCCCTGGTGAG CGCC TTTACCCTGGCGGGGA TTTTTCTGGGCTAAT Shew_1747 1995352 - 1995741 + | hypothetical protein Shew_1748 1996301 - 1996065 - | hypothetical protein TERM 1932 1996465 - 1996475 + H 74 -5.4 -4.63218 | opp_overlap 1996465 TTATGTATGTAAAAA TGAC GCT GTCA TTTTATTAGCAAAGG TERM 1933 1996475 - 1996465 - H 74 -5.4 -4.67353 | opp_overlap 1996465 TTATGTATGTAAAAA TGAC GCT GTCA TTTTATTAGCAAAGG TERM 1934 1997004 - 1996985 - H 87 -5 -5.40072 | overlap 1996987 TTTTTGGCAAAAAAA GGCCATTT GTGG AAATGGTC AAATTAATCCTTCCT Shew_1749 1997076 - 1998575 + | hypothetical protein TERM 1935 1998676 - 1998693 + F 77 -7 -4.47786 | opp_overlap 1998676 AACAAATATGAATAA GTGTCG CGTAGC CGACAC TTTATTTGCCTGCTT Shew_1751 1999736 - 2001265 + | hypothetical protein TERM 1936 2001515 - 2001528 + G 90 -5.3 -5.38549 | CCAAGAATGCTTCAA GTTAC AATT GTAAC TTTTTATTCTTTACC Shew_1752 2001262 - 2005365 + | proprotein convertase, P TERM 1937 2005434 - 2005449 + G 79 -4 -5.15381 | overlap 2005394 2005391 2005392 ACAGTGCAGCGCCCG GAGATA CAGG TGTCTC TTTTTTCCCTATGTT Shew_1753 2005358 - 2005882 + | hypothetical protein TERM 1938 2006343 - 2006376 + T 100 -13.9 -3.66654 | GGCTAGACGGATCGA GACCGCGCTAGACTC TGGG GAGTCTAACGCTGTC TTTACGCTTAGGGTA Shew_1754 2006565 - 2006401 - | hypothetical protein Shew_1755 2006941 - 2006591 - | hydrogenase expression/synthesis, HypA Shew_1756 2007951 - 2006941 - | hydrogenase expression/formation protein HypE Shew_1757 2009069 - 2007954 - | hydrogenase expression/formation protein HypD Shew_1758 2009314 - 2009066 - | hydrogenase assembly chaperone hypC/hupF Shew_1759 2010150 - 2009317 - | hydrogenase accessory protein HypB Shew_1760 2012647 - 2010302 - | (NiFe) hydrogenase maturation protein HypF Shew_1761 2014460 - 2012673 - | hypothetical protein Shew_1762 2015004 - 2014441 - | hydrogenase expression/formation protein TERM 1939 2014970 - 2014943 - G 100 -14.3 -4.47551 | AGGTAATTGACAAAA TGTACGCCGAT CCCTTC ATCGGCGTACA GCACATTACCAATAC Shew_1763 2015687 - 2015016 - | Ni/Fe-hydrogenase, b-type cytochrome subunit Shew_1764 2017404 - 2015698 - | nickel-dependent hydrogenase, large subunit Shew_1765 2018545 - 2017409 - | hydrogenase (NiFe) small subunit HydA Shew_1766 2018888 - 2019304 + | signal transduction protein TERM 1940 2019420 - 2019432 + F 72 -5.5 -4.57514 | ATGGCGCGTTCCTTG GTAGG ATC CCTGC TTTGTGTTTTGTTAT Shew_1767 2019461 - 2023348 + | ATP-dependent helicase HrpA TERM 1941 2023372 - 2023388 + F 100 -13.7 -5.75342 | opp_overlap 2023362 2023372 ATAAAGACTGAAGAA GCACCCG CAA CGGGTGC TTTTTTTTACCCCAC TERM 1942 2023388 - 2023372 - f 100 -13.7 -3.7626 | opp_overlap 2023372, overlap 2023362 ATAAAGACTGAAGAA GCACCCG CAA CGGGTGC TTTTTTTTACCCCAC Shew_1768 2023767 - 2023925 + | periplasmic nitrate reductase NapE TERM 1943 2023999 - 2024015 + G 71 -7.3 -4.05747 | TCACCAGTTTAGTGG TTCAGGT TAA GCCTGAA TTTATGTCGAGTGTC Shew_1769 2023959 - 2024222 + | NapD family protein Shew_1770 2024219 - 2026714 + | nitrate reductase Shew_1771 2026726 - 2027205 + | nitrate reductase cytochrome c-type subunit (NapB) Shew_1772 2027216 - 2027803 + | NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome TERM 1944 2027856 - 2027878 + T 100 -7.7 -5.9667 | opp_overlap 2027856 ATCTCCAAGTAAAAA CGCCAGC ATTCATCTC GCTGGCG TTTTTTTATCTTTTT TERM 1945 2027878 - 2027856 - T 89 -8.4 -4.86621 | opp_overlap 2027856 ATCTCCAAGTAAAAA CGCCAGCA TTCATCT CGCTGGCG TTTTTTTATCTTTTT Shew_1773 2028824 - 2027904 - | LysR family transcriptional regulator TERM 1946 2029438 - 2029416 - g 71 -4.8 -4.57073 | overlap 2029419 2029432 GATTGCCCTTAAAAA TAGCGCATTG AAA CAAGGCGGTA ACGCCATAGTGAATA Shew_1774 2029126 - 2029623 + | excinuclease ATPase subunit TERM 1947 2029760 - 2029731 - T 86 -13.7 -2.78032 | opp_overlap 2029737, overlap 2029737 TTTCGTTCAAAATAG TAAAAACGCCAGC AAAT GCTGGCGTTTTTT GTGCTTATTGATTAG TERM 1948 2029737 - 2029754 + T 100 -12.7 -5.4111 | opp_overlap 2029731 2029737 TCAAAATAGTAAAAA CGCCAGC AAAT GCTGGCG TTTTTTGTGCTTATT TERM 1949 2029754 - 2029737 - T 100 -12.7 -4.98616 | opp_overlap 2029737, overlap 2029731 TCAAAATAGTAAAAA CGCCAGC AAAT GCTGGCG TTTTTTGTGCTTATT Shew_1775 2030291 - 2029797 - | acetolactate synthase 3 regulatory subunit Shew_1776 2032012 - 2030291 - | acetolactate synthase 3 catalytic subunit TERM 1950 2030968 - 2030984 + g 74 -4.4 -4.72272 | CGCTCCACCAATAGT CGATGG CGCCT TCATCG TTTTTCATCGACGGC TERM 1951 2032108 - 2032085 - R 78 -11.1 -3.24411 | overlap 2032083 2032081 ATCGCTCTAAACATA GAGTCTGGA AGGTAA TCCAGACTC GCGCTTCACCCGAAA TERM 1952 2032280 - 2032296 + r 71 -3.7 -4.8622 | GCGGTTTGGTGGGGG TTGAGGG TCG TCTTCAA TTTTTAATTGGGCGA Shew_1777 2033689 - 2032466 - | Bcr/CflA subfamily drug resistance transporter TERM 1953 2032620 - 2032644 + g 74 -7.8 -4.2461 | gap 1 CCAAATCTCAGGGTG CCGATCACCGC CGTC GCGGTGC-CGG TTTCTTGCTGAAACT Shew_1778 2034792 - 2033905 - | glutamine amidotransferase TERM 1954 2034230 - 2034242 + g 74 -10.5 -3.62046 | AAGGCGTTAGTGTCG GCGCC TGC GGCGC TTCTTAGGCGCATGA TERM 1955 2034253 - 2034283 + g 81 -10.4 -4.11692 | GGCGCTTCTTAGGCG CATGATGCAGGCGA TGG TCGCCTCCATCGCG TTTTCCAGCTGACTC TERM 1956 2034968 - 2034981 + H 79 -9.5 -3.81414 | TTATAGACTATTTAT CCGCC TTTT GGCGG TTCTTACTTAGGCGT Shew_1779 2035024 - 2036907 + | alkaline phosphatase TERM 1957 2036939 - 2036954 + T 100 -11.8 -5.39721 | opp_overlap 2036939 ATAGGGAAGGAAAAA GGCGCC TGAG GGCGCC TTTTTTGTATGCTCC TERM 1958 2036954 - 2036939 - T 100 -11.8 -4.89009 | opp_overlap 2036939 ATAGGGAAGGAAAAA GGCGCC TGAG GGCGCC TTTTTTGTATGCTCC Shew_1780 2037656 - 2036973 - | glutathione S-transferase domain-containing protein Shew_1781 2037965 - 2038945 + | hypothetical protein TERM 1959 2039131 - 2039157 + F 100 -8 -5.4833 | opp_overlap 2039131 GAGTAAGAAGCAAAG GCGAGTGTTGTG TTA TGCAATGCTCGC TTTTTTATTGGCTGC Shew_1782 2039709 - 2040188 + | MarR family transcriptional regulator Shew_1783 2040194 - 2041252 + | secretion protein HlyD family protein TERM 1960 2041520 - 2041536 + G 82 -2.2 -5.34055 | overlap 2041515 GGCTCGCACCCGATA GTGATG TCTAT CGTCGC TTTTTTGCTGTTTCT TERM 1961 2041807 - 2041831 + G 79 -14.3 -2.73735 | overlap 2041796 2041809 GCGTCACGAGGCGCT GATGGGGGCGA CTA TCGCCACCATC TCCTTCGCCGTGTTT TERM 1962 2041809 - 2041829 + G 70 -11.1 -2.90901 | overlap 2041807 2041796 GTCACGAGGCGCTGA TGGGGGCGA CTA TCGCCACCA TCTCCTTCGCCGTGT Shew_1784 2041262 - 2042290 + | hypothetical protein Shew_1785 2043090 - 2042287 - | band 7 protein Shew_1786 2044602 - 2043100 - | hypothetical protein TERM 1963 2044655 - 2044674 + H 70 -7 -4.08692 | overlap 2044671 CCATGGGCAATATTT GCGTCGGC ATTG GCGGGCGC TTTTGCAGGCGCTTG TERM 1964 2046093 - 2046107 + G 72 -10 -3.59262 | opp_overlap 2046093 CCTGAGACTGAGATA GTGGTC GGT GACCAC TTTGGCAGTGTGACC Shew_1787 2044776 - 2046161 + | putative chaperone Shew_1788 2046229 - 2046726 + | CreA family protein TERM 1965 2046871 - 2046844 - T 80 -7 -4.78077 | opp_overlap 2046849, overlap 2046849 2046851 GCTAATCAAAACAAA GAAAACGCCGTC ATCT GACGGTGTTTTT TTATGGGAATCCTCT TERM 1966 2046866 - 2046849 - T 87 -6.9 -5.26247 | opp_overlap 2046849, overlap 2046844 2046851 TCAAAACAAAGAAAA CGCCGTC ATCT GACGGTG TTTTTTTATGGGAAT TERM 1967 2046849 - 2046866 + T 100 -9.1 -5.61596 | opp_overlap 2046849 2046844 2046851 TCAAAACAAAGAAAA CGCCGTC ATCT GACGGTG TTTTTTTATGGGAAT Shew_1789 2048093 - 2046906 - | cystathionine beta-lyase TERM 1968 2047943 - 2047959 + g 80 -11.5 -3.7282 | opp_overlap 2047943 2047941 2047944, overlap 2047944 GGCGACCATAGAACA TCGCGCC ATT GGCGCGG TTCTTGGTGGCATGA TERM 1969 2047944 - 2047958 + g 74 -12.8 -2.83371 | opp_overlap 2047944 2047943 2047941, overlap 2047943 GCGACCATAGAACAT CGCGCC ATT GGCGCG GTTCTTGGTGGCATG TERM 1970 2047958 - 2047944 - G 73 -12.8 -2.6062 | opp_overlap 2047943 2047944, overlap 2047943 2047941 GCGACCATAGAACAT CGCGCC ATT GGCGCG GTTCTTGGTGGCATG Shew_1790 2050368 - 2048197 - | integral membrane sensor signal transduction histidine kinase Shew_1791 2051063 - 2050371 - | two component transcriptional regulator Shew_1792 2051283 - 2052038 + | OmpA/MotB domain-containing protein TERM 1971 2052120 - 2052137 + G 77 -10.5 -3.73995 | overlap 2052121 2052121 AACCAGACCGACCTT TGCCCCC CGAG GGGGGCG CTTTTTTCTCGCCAG TERM 1972 2052121 - 2052138 + G 95 -9.1 -5.24129 | gap 1, overlap 2052120 2052121 ACCAGACCGACCTTT GC-CCCCC GAG GGGGGCGC TTTTTTCTCGCCAGC TERM 1973 2052121 - 2052136 + G 71 -11.8 -2.83915 | overlap 2052120 2052121 ACCAGACCGACCTTT GCCCCC CGAG GGGGGC GCTTTTTTCTCGCCA TERM 1974 2054123 - 2054108 - g 74 -3.2 -4.88407 | GCAGCTAAGTAAAAA CGCC AAGAATCA GGCG GCGATAAAAGAGAGC TERM 1975 2054296 - 2054273 - g 75 -8.8 -4.18494 | opp_overlap 2054295 TATGCCGATGCAAAA TCAGTGGCCG CAGA CCGCCACCGA GAGTCGTCTCTACTT Shew_1793 2052078 - 2054408 + | vault protein inter-alpha-trypsin subunit Shew_1794 2054408 - 2055208 + | sortase family protein Shew_1795 2056315 - 2055296 - | diguanylate cyclase Shew_1796 2059096 - 2056472 - | hypothetical protein TERM 1976 2057926 - 2057952 + g 71 -8.6 -3.98842 | TCCCCGGATTCTCTT CGGCGCTTAGGC TGA GCATGAGCGGCG TTTGTGAGTGTTGTG Shew_1797 2059715 - 2059083 - | paraquat-inducible protein A Shew_1798 2060370 - 2059708 - | paraquat-inducible protein A Shew_1799 2060579 - 2060875 + | YebG family protein Shew_1800 2060893 - 2061351 + | putative GAF sensor protein Shew_1801 2061621 - 2062268 + | putative solute/DNA competence effector Shew_1802 2062300 - 2064345 + | carboxy-terminal protease TERM 1977 2064383 - 2064369 - f 89 -8.5 -4.78764 | opp_overlap 2064369 CAAATTTATTAAAAA CGCGC TATTG GCGCG TTTTTTTATAATCTT TERM 1978 2064369 - 2064383 + F 100 -9.2 -5.70829 | opp_overlap 2064369 CAAATTTATTAAAAA CGCGCT ATT GGCGCG TTTTTTTATAATCTT Shew_1803 2064418 - 2066979 + | aminopeptidase N TERM 1979 2067144 - 2067114 - f 81 -11.8 -3.10053 | opp_overlap 2067115, overlap 2067117 AGATAGTCTAAGAGA GTAGGGCGAGGTGC TTG GCATCTCGCCCCAT TTTAGAAAGCAAATT TERM 1980 2067115 - 2067143 + F 100 -15.3 -4.07687 | opp_overlap 2067114 2067117 GATAGTCTAAGAGAG TAGGGCGAGGTGC TTG GCATCTCGCCCCA TTTTAGAAAGCAAAT TERM 1981 2067141 - 2067117 - f 93 -15.7 -2.75826 | opp_overlap 2067115, overlap 2067114 TAGTCTAAGAGAGTA GGGCGAGGTGC TTG GCATCTCGCCC CATTTTAGAAAGCAA Shew_1804 2067124 - 2067378 + | hypothetical protein TERM 1982 2067731 - 2067712 - g 75 -2.2 -5.10154 | overlap 2067713 AGCTAAAATGAAAAA CGTTAAAA ATGG CTTTAACA AGTCAGCGCTAGCTT Shew_1805 2067704 - 2069752 + | hypothetical protein TERM 1983 2070329 - 2070312 - g 74 -10.5 -3.59262 | GCGTAGATGTGGAAA CCGCCCG TAGC CAGGCGG CGCCTACAGCATCTG Shew_1806 2069771 - 2071135 + | hypothetical protein TERM 1984 2071241 - 2071262 + F 85 -11.5 -3.53012 | overlap 2071242 2071244 TTAAAGAGTTAGCGT AGAGGGGCC TGTT GGCCCCTCA TTTCACGAAAGGAAG TERM 1985 2071242 - 2071261 + F 89 -15 -2.71712 | overlap 2071241 2071244 TAAAGAGTTAGCGTA GAGGGGCC TGTT GGCCCCTC ATTTCACGAAAGGAA TERM 1986 2071244 - 2071259 + F 80 -11.8 -2.90496 | overlap 2071242 2071241 AAGAGTTAGCGTAGA GGGGCC TGTT GGCCCC TCATTTCACGAAAGG Shew_1807 2071283 - 2072296 + | BNR repeat-containing protein Shew_1808 2072309 - 2074612 + | hypothetical protein TERM 1987 2074623 - 2074642 + F 100 -12.2 -5.49729 | opp_overlap 2074623 GATAGTGAACTGAAA GAGAGAGC ATTA GCTCTCTC TTTTTTTGCATAGTT TERM 1988 2074642 - 2074623 - f 93 -12.2 -3.77666 | opp_overlap 2074623 GATAGTGAACTGAAA GAGAGAGC ATTA GCTCTCTC TTTTTTTGCATAGTT Shew_1809 2074877 - 2079721 + | NAD-glutamate dehydrogenase TERM 1989 2079742 - 2079761 + F 100 -12.8 -5.1287 | AAAAATTAGTCATGA GCCCTGGC AATC GCCGGGGC TTTTTTCGGTCTAGG TERM 1990 2080525 - 2080550 + G 75 -9.7 -3.80858 | gap 1, opp_overlap 2080523 2080521 2080526, overlap 2080526 ATCGCCACCAACACC ACGCTGAC-CCG CGA CGGCGTCAGCGG TTTGGTGAATTCTAA TERM 1991 2080526 - 2080549 + G 74 -13.2 -2.88033 | gap 1, opp_overlap 2080523 2080521 2080526, overlap 2080525 TCGCCACCAACACCA CGCTGAC-CCG CGA CGGCGTCAGCG GTTTGGTGAATTCTA TERM 1992 2080549 - 2080526 - g 74 -13.2 -2.77523 | gap 1, opp_overlap 2080526 2080525, overlap 2080523 2080521 TCGCCACCAACACCA CGCTGAC-CCG CGA CGGCGTCAGCG GTTTGGTGAATTCTA Shew_1810 2079784 - 2080809 + | dihydroorotate dehydrogenase 2 TERM 1993 2080828 - 2080807 - f 73 -6 -4.32046 | CGCGTAAAAAGTAAA TAAGATCT TATTTT AGATCTTA AAACGATCGCGCGAT TERM 1994 2080838 - 2080858 + F 91 -11.2 -3.73775 | opp_overlap 2080832, overlap 2080833 ATCTTAAAACGATCG CGCGATCT TATTT AGATCGCG TTTGATCGCGATAAC TERM 1995 2080892 - 2080902 + F 100 -2.6 -5.94597 | opp_overlap 2080892 TTGTAATCTATATCA TATT TAT AATA TTTTTTTTGATATTG Shew_1811 2080969 - 2081502 + | hypothetical protein TERM 1996 2081534 - 2081553 + F 100 -13.6 -4.83615 | opp_overlap 2081530 AATAGATTAATTGGA TGGGGAGC GACT GCTCCCCA TTTTTATGCCCGCTG TERM 1997 2083378 - 2083390 + G 79 -9.1 -4.26076 | opp_overlap 2083377 2083376 TTAAAATAAAAGATG CGGTC GTC GACCG TTTTCGTGACGATGG Shew_1812 2083035 - 2085170 + | 23S rRNA m(2)G2445 methyltransferase Shew_1813 2085163 - 2085399 + | glutaredoxin 2 Shew_1814 2085401 - 2087320 + | ABC transporter ATPase component Shew_1815 2087345 - 2089198 + | hypothetical protein TERM 1998 2089259 - 2089211 - f 90 -12.8 -3.29461 | gap 1, opp_overlap 2089227, overlap 2089227 TAAGGGTTGTTAGAA CTTATCGAACTAAAAATCGGGGC GAAT GCCCCGATTTTTTATT-AATAAG GAACTCATGCGTTTA TERM 1999 2089244 - 2089227 - f 100 -12.7 -4.88407 | opp_overlap 2089227, overlap 2089211 TTATCGAACTAAAAA TCGGGGC GAAT GCCCCGA TTTTTTATTAATAAG TERM 2000 2089227 - 2089244 + F 100 -12.7 -5.5112 | opp_overlap 2089227 2089211 TTATCGAACTAAAAA TCGGGGC GAAT GCCCCGA TTTTTTATTAATAAG TERM 2001 2089410 - 2089400 - g 93 -5.4 -5.63645 | TGAAAAGACAAAAAA GAGA TCG TCTC GATAGAGCTTTTTCA Shew_1816 2089384 - 2089560 + | ribosome modulation factor TERM 2002 2089571 - 2089590 + T 95 -12.2 -4.2828 | AGTGATTTAGCTGTT TGCCCTCT GTTT AGAGGGCA TTTTCGTCAATGAGC Shew_1817 2090134 - 2089619 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase Shew_1818 2091911 - 2090202 - | ATP-dependent protease TERM 2003 2092143 - 2092160 + H 72 -5.5 -4.59027 | overlap 2092136 2092144 TAGATGACGGTTTAA TGACCTG GTGT CGGGTCG TTTTCTGTCCTGATT Shew_1819 2092309 - 2092977 + | GntR family transcriptional regulator prpB 2092990 - 2093868 + | 2-methylisocitrate lyase TERM 2004 2093903 - 2093869 - f 89 -12 -3.62255 | overlap 2093865 2093871 2093874 GGTAAGAACAAGTAA CACAGCCTGGCCCGCC AAG GGCGGGCCAGATTGAC AGCATACCCCCTACA TERM 2005 2093901 - 2093871 - f 100 -19 -3.37882 | overlap 2093869 2093865 2093874 TAAGAACAAGTAACA CAGCCTGGCCCGCC AAG GGCGGGCCAGATTG ACAGCATACCCCCTA TERM 2006 2093898 - 2093874 - f 100 -19.3 -2.53228 | overlap 2093871 2093869 2093865 GAACAAGTAACACAG CCTGGCCCGCC AAG GGCGGGCCAGA TTGACAGCATACCCC Shew_1821 2093970 - 2095094 + | 2-methylcitrate synthase/citrate synthase II TERM 2007 2095137 - 2095104 - f 75 -10.9 -2.92921 | opp_overlap 2095105, overlap 2095107 AGATAAGCCTAGATA CCAGCCCCTCTGCCT TTCA AGGCTCAGGGGCTGT TTTGGTTTGCTTGCT TERM 2008 2095105 - 2095136 + F 100 -14.4 -4.62054 | opp_overlap 2095104 2095107 GATAAGCCTAGATAC CAGCCCCTCTGCCT TTCA AGGCTCAGGGGCTG TTTTGGTTTGCTTGC TERM 2009 2095134 - 2095107 - f 77 -11.2 -2.70275 | opp_overlap 2095105, overlap 2095104 TAAGCCTAGATACCA GCCCCTCTGCCT TTCA AGGCTCAGGGGC TGTTTTGGTTTGCTT Shew_1822 2095181 - 2097769 + | aconitate hydratase TERM 2010 2097782 - 2097809 + F 72 -8.4 -3.62597 | opp_overlap 2097782 TAAGGGCAGTCAATA GCGGGTAGGG CGATTATA CCTTGCCCGC TTCTTAAAGGATAAG TERM 2011 2097867 - 2097884 + G 81 -4.8 -5.15969 | ACCTATATGCGCGGT GGCACC AGCAAG GGTGTC TTTTTTGCGTTAAAG Shew_1823 2097828 - 2098997 + | putative AcnD-accessory protein PrpF TERM 2012 2099014 - 2099041 + F 73 -10 -3.09018 | opp_overlap 2099020, overlap 2099020 GCGATACACTCTCGA TAAAAAGGATGC CTCG GCATCCTTTTTC GTTTTGAGATGATAG TERM 2013 2099020 - 2099035 + F 93 -9 -5.0925 | opp_overlap 2099020, overlap 2099014 CACTCTCGATAAAAA GGATGC CTCG GCATCC TTTTTCGTTTTGAGA TERM 2014 2099035 - 2099020 - f 90 -9 -4.83615 | opp_overlap 2099020 2099014 CACTCTCGATAAAAA GGATGC CTCG GCATCC TTTTTCGTTTTGAGA Shew_1824 2099222 - 2099911 + | response regulator uvrC 2099943 - 2101772 + | excinuclease ABC subunit C Shew_1826 2101820 - 2102377 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 2015 2102764 - 2102744 - f 72 -10.5 -2.89742 | overlap 2102747 TGGAATTGGTAGACA CAAGGGATT TAA AATCCCTCG CTGGTAACAGCGTGC TERM 2016 2102761 - 2102747 - f 72 -8.6 -3.5947 | overlap 2102744 AATTGGTAGACACAA GGGATT TAA AATCCC TCGCTGGTAACAGCG TERM 2017 2102853 - 2102814 - f 74 -10.8 -2.57795 | opp_overlap 2102823, overlap 2102823 GGTACCATCAATTGA TGACAAAAAGGCCTCAAC GCAA GTTGGGGCCTTTTTGTTT GTTCACTAAAAATCT TERM 2018 2102844 - 2102823 - f 93 -10.1 -4.92783 | opp_overlap 2102823, overlap 2102814 AATTGATGACAAAAA GGCCTCAAC GCAA GTTGGGGCC TTTTTGTTTGTTCAC TERM 2019 2102823 - 2102844 + F 100 -12.3 -5.47159 | opp_overlap 2102823 2102814 AATTGATGACAAAAA GGCCTCAAC GCAA GTTGGGGCC TTTTTGTTTGTTCAC Shew_1827 2103011 - 2103577 + | methylation site containing protein TERM 2020 2103581 - 2103591 + F 72 -6.8 -4.21438 | ACCCTCAGCTAACTC GGCT CCT AGCC TTCTTTCTTAACATG Shew_1828 2103707 - 2105083 + | peptidoglycan binding domain-containing protein Shew_1829 2105252 - 2105743 + | hypothetical protein Shew_1830 2105880 - 2106167 + | ribosomal protein L25 TERM 2021 2106178 - 2106216 + T 100 -11.9 -4.45117 | opp_overlap 2106182 2106190, overlap 2106182 2106190 CTTAATAGCGGATCT GAAATAAAAAAAGCGCC TTCGT GGCGCTTTTTTTATGCC TTTATTTCCCGTATC TERM 2022 2106212 - 2106182 - T 100 -15.7 -3.60805 | opp_overlap 2106182 2106178 2106190, overlap 2106190 ATAGCGGATCTGAAA TAAAAAAAGCGCC TTCGT GGCGCTTTTTTTA TGCCTTTATTTCCCG TERM 2023 2106182 - 2106212 + T 93 -15.7 -2.80589 | opp_overlap 2106182 2106190, overlap 2106178 2106190 ATAGCGGATCTGAAA TAAAAAAAGCGCC TTCGT GGCGCTTTTTTTA TGCCTTTATTTCCCG TERM 2024 2106190 - 2106204 + T 100 -8.5 -5.68039 | opp_overlap 2106182 2106190, overlap 2106182 2106178 TCTGAAATAAAAAAA GCGCC TTCGT GGCGC TTTTTTTATGCCTTT TERM 2025 2106204 - 2106190 - T 100 -8.5 -5.95539 | opp_overlap 2106190 2106182 2106178, overlap 2106182 TCTGAAATAAAAAAA GCGCC TTCGT GGCGC TTTTTTTATGCCTTT Shew_1831 2107797 - 2106265 - | hypothetical protein Shew_1832 2109074 - 2107806 - | hypothetical protein Shew_1833 2111056 - 2109122 - | putative serine protein kinase, PrkA TERM 2026 2111191 - 2111170 - R 77 -2.3 -5.35365 | opp_overlap 2111183 2111183 2111185, overlap 2111174 2111180 AAAAGACAATAAAAA CAATGACAA ACAG TTGCAATTG CAATTGTTGCAACTG TERM 2027 2111206 - 2111180 - R 72 -6.7 -4.21303 | opp_overlap 2111183 2111183 2111185, overlap 2111170 2111174 AAAAACAATGACAAA CAGTTGCAA TTGCAATTG TTGCAACTG TAGTGGCTTGTCTAG TERM 2028 2111473 - 2111488 + r 82 -10.4 -4.14511 | opp_overlap 2111473 CCGGGCAATAAAAAA GGAGCC GGGA GGCTCC TTTTCAAATCCGGTT TERM 2029 2111488 - 2111473 - R 100 -10.4 -5.4505 | opp_overlap 2111473 CCGGGCAATAAAAAA GGAGCC GGGA GGCTCC TTTTCAAATCCGGTT Shew_1834 2112096 - 2111512 - | superoxide dismutase TERM 2030 2112373 - 2112361 - g 70 -5.5 -4.47686 | GTAGAAAAAATCAAA CAGCA AAT CGCTG AAAATCCTATCATCG Shew_1835 2112328 - 2112678 + | glutaredoxin-like protein TERM 2031 2112752 - 2112723 - T 90 -12.3 -3.32844 | opp_overlap 2112729, overlap 2112729 CTTCCTACCCGATAA GAAAAAGCCCTTC AAAT GAAGGGCTTTTTT GTGTCTAAAATCCAT TERM 2032 2112746 - 2112729 - T 100 -11.3 -5.19328 | opp_overlap 2112729, overlap 2112723 ACCCGATAAGAAAAA GCCCTTC AAAT GAAGGGC TTTTTTGTGTCTAAA TERM 2033 2112729 - 2112746 + T 100 -11.3 -5.4251 | opp_overlap 2112723 2112729 ACCCGATAAGAAAAA GCCCTTC AAAT GAAGGGC TTTTTTGTGTCTAAA Shew_1836 2114033 - 2112798 - | uracil-xanthine permease TERM 2034 2114588 - 2114605 + G 74 -11.3 -3.36878 | opp_overlap 2114590 CCGGTTTGGGGCAAG CAGCGTC CACT GACGCTG TTGTGGCTAGCTCAG TERM 2035 2114892 - 2114914 + G 74 -10.6 -3.57561 | AGTTGTCCCTCTTCC CAGCGGCT AGCGAGC AGCCGCTG TTTAACCCCTTGACC Shew_1837 2114231 - 2115361 + | hypothetical protein TERM 2036 2115999 - 2115971 - g 73 -8.7 -3.99324 | overlap 2115972 GCCGATGAGGAGAAA CTGGCGGCGCTGC AAC GCAGGGCCGCGAT GCGCGGATTACAGCT TERM 2037 2115998 - 2115972 - g 73 -12.2 -2.99273 | overlap 2115971 CCGATGAGGAGAAAC TGGCGGCGCTGC AAC GCAGGGCCGCGA TGCGCGGATTACAGC Shew_1838 2115452 - 2116162 + | DNA replication initiation factor TERM 2038 2116261 - 2116245 - T 100 -9.4 -5.31877 | opp_overlap 2116245 ACTTACCACAAAAAA GGCACC TTATT GGTGCC TTTTGCGTTAGATGC TERM 2039 2116245 - 2116261 + T 84 -9.4 -4.28774 | opp_overlap 2116245 ACTTACCACAAAAAA GGCACC TTATT GGTGCC TTTTGCGTTAGATGC Shew_1839 2116664 - 2116293 - | hypothetical protein Shew_1840 2117041 - 2116679 - | arsenate reductase TERM 2040 2117074 - 2117104 + r 100 -13.3 -4.39696 | opp_overlap 2117074 CATTCTACTGCAAAA GGTGAGCCGAGTC ACAGG GCCTTGGCTCACC TTTATTGGTTTAAAG TERM 2041 2117104 - 2117074 - R 86 -11.1 -4.14243 | opp_overlap 2117074 CATTCTACTGCAAAA GGTGAGCCGAGTC ACAGG GCCTTGGCTCACC TTTATTGGTTTAAAG Shew_1841 2118571 - 2117114 - | peptidase M48, Ste24p Shew_1842 2118741 - 2118962 + | SirA family protein Shew_1843 2119132 - 2120232 + | hypothetical protein TERM 2042 2120267 - 2120252 - T 80 -10.4 -3.71649 | opp_overlap 2120252 TGTTTAAACGTTAAA GGAGCC TCTA GGCTCC TTTTTTGTGGAAGTA TERM 2043 2120252 - 2120267 + T 100 -10.4 -5.252 | opp_overlap 2120252 TGTTTAAACGTTAAA GGAGCC TCTA GGCTCC TTTTTTGTGGAAGTA Shew_1844 2121191 - 2120304 - | chromosome replication initiation inhibitor protein TERM 2044 2121862 - 2121851 - g 72 -2.2 -5.00616 | CCGCTGTTTAAAAAA CCAA AGGC CTGG TGCTACTTAGACAGA Shew_1845 2121305 - 2121949 + | lysine exporter protein LysE/YggA TERM 2045 2122032 - 2122004 - T 100 -14.7 -3.50447 | opp_overlap 2122011, overlap 2122011 CGAATCTTTAGATAA TAAAAAAGCCGGC ATT GCCGGCTTTTTTT GTCGAGGACTAACTA TERM 2046 2122011 - 2122025 + T 100 -12.8 -5.60993 | opp_overlap 2122011 2122004 TTAGATAATAAAAAA GCCGGC ATT GCCGGC TTTTTTTGTCGAGGA TERM 2047 2122025 - 2122011 - T 100 -12.8 -5.60689 | opp_overlap 2122011, overlap 2122004 TTAGATAATAAAAAA GCCGGC ATT GCCGGC TTTTTTTGTCGAGGA TERM 2048 2122046 - 2122057 + T 71 -4.4 -4.70772 | opp_overlap 2122046 TTGTCGAGGACTAAC TAGC ATTA GCTA TTTTCTTGAATATAT Shew_1846 2122521 - 2122051 - | redoxin domain-containing protein Shew_1847 2123072 - 2122518 - | amino acid-binding ACT domain-containing protein Shew_1848 2123316 - 2124200 + | dihydrodipicolinate synthase Shew_1849 2124205 - 2125326 + | NlpB/DapX family lipoprotein TERM 2049 2125363 - 2125378 + F 100 -10.4 -5.60993 | opp_overlap 2125363 GCTTAGATAAAGAAA GAGGCC AAAA GGCCTC TTTTTTTGTGCGCGC TERM 2050 2125378 - 2125363 - f 91 -10.4 -4.62441 | opp_overlap 2125363 GCTTAGATAAAGAAA GAGGCC AAAA GGCCTC TTTTTTTGTGCGCGC Shew_1850 2125619 - 2127991 + | diguanylate cyclase/phosphodiesterase with GAF sensor Shew_1851 2128155 - 2129240 + | RND family efflux transporter MFP subunit Shew_1852 2129237 - 2132365 + | acriflavin resistance protein TERM 2051 2132377 - 2132396 + F 100 -12.2 -5.38047 | opp_overlap 2132371 2132377 CTAGATAAATGAGAA GGCCAATC ACAA GATTGGCC TTTTTTGTATCCATA TERM 2052 2132396 - 2132377 - f 89 -12.2 -3.67102 | opp_overlap 2132377, overlap 2132371 CTAGATAAATGAGAA GGCCAATC ACAA GATTGGCC TTTTTTGTATCCATA TERM 2053 2132699 - 2132679 - g 74 -3.1 -4.87273 | overlap 2132681 AACACTGCAGAAAAA CGCCATTCG AGT CGATGGACG CCTCAGCATGAGTCG Shew_1853 2132614 - 2132931 + | hypothetical protein TERM 2054 2133069 - 2133091 + F 100 -6.9 -5.79595 | opp_overlap 2133064 2133069 TAGCACTAACTAAAA GGCGAGTCC TGTCT GGGCTGGCC TTTTTTGTTTTACCA Shew_1854 2133350 - 2134720 + | hypothetical protein TERM 2055 2134778 - 2134795 + T 89 -9.9 -4.53303 | opp_overlap 2134778 AAGGGCAATAAAAAA GGCTTAC CTGG GTAAGCC TTTTCTGTAGCGATG TERM 2056 2134795 - 2134778 - T 100 -9.9 -5.4756 | opp_overlap 2134778 AAGGGCAATAAAAAA GGCTTAC CTGG GTAAGCC TTTTCTGTAGCGATG Shew_1855 2135091 - 2134825 - | hypothetical protein TERM 2057 2134891 - 2134911 + g 70 -5.4 -4.45117 | GATAGCTTTGTCTGG GCTGGCTT TATCT GAGTCAGC TTTGTTTAGGCTATC Shew_1856 2135859 - 2135122 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 2058 2135923 - 2135905 - R 93 -11.7 -3.75824 | CAGTGCATAAGAGAA GGGGCTC ACTAG GAGCCCC TTACACCTTGAGCTT Shew_1857 2137014 - 2135944 - | iron-containing alcohol dehydrogenase TERM 2059 2137083 - 2137054 - R 75 -8.6 -3.81926 | gap 1, overlap 2137055 TAGTGTAAAAAGTAA CGTCGCAG-GACC GAGTT GGCCACTGCGACA GGGAATTTGAGAGAC TERM 2060 2137082 - 2137055 - R 70 -9.9 -2.88433 | gap 1, overlap 2137054 AGTGTAAAAAGTAAC GTCGCAG-GACC GAGTT GGCCACTGCGAC AGGGAATTTGAGAGA Shew_1858 2138291 - 2137104 - | DegT/DnrJ/EryC1/StrS aminotransferase Shew_1859 2139157 - 2138546 - | carbonate dehydratase Shew_1860 2140130 - 2139297 - | alpha/beta hydrolase fold TERM 2061 2139419 - 2139396 - G 72 -3.7 -4.70659 | overlap 2139398 GGGGATATGCAAAAA CTCGCTGCC GTCGAT GGCATCGTG CATCAGATAGGCCTC Shew_1861 2140889 - 2140137 - | peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin Shew_1862 2142013 - 2140883 - | succinyl-diaminopimelate desuccinylase TERM 2062 2141381 - 2141393 + g 70 -10.5 -3.36803 | CGCCAGTTCATCCAG GGCGG GGG CCGCC TTGTGGATAGGATTG Shew_1863 2142354 - 2142010 - | arsenate reductase and related TERM 2063 2142450 - 2142461 + r 86 -2.2 -5.71638 | overlap 2142436 GCTGGCAAGTGCAGT GACT TGCA GGTC TTTTTTTGGTTATTG TERM 2064 2142556 - 2142539 - R 100 -6.3 -5.75342 | CTGTTTGAAAAAAAA TCACCCA GGTT TAGGTGA GAAGCCGCTGCCCGG Shew_1864 2143150 - 2142641 - | glucose-specific PTS system component Shew_1865 2144923 - 2143217 - | phosphoenolpyruvate-protein phosphotransferase TERM 2065 2144043 - 2144033 - G 70 -5.4 -4.40003 | GTTCATAAACAGAAA TTCG GTG CGAA ACAGGCCAACCCCCT Shew_1866 2145192 - 2144935 - | phosphotransferase system, phosphocarrier protein HPr Shew_1867 2145616 - 2145224 - | hypothetical protein TERM 2066 2145784 - 2145767 - R 100 -12.7 -5.13722 | opp_overlap 2145767 TGCAGCAAAATAAAA GGGAGCC ATCT GGCTCCC TTCTTTATCTCTAGT TERM 2067 2145767 - 2145784 + r 100 -12.7 -4.19276 | opp_overlap 2145767 TGCAGCAAAATAAAA GGGAGCC ATCT GGCTCCC TTCTTTATCTCTAGT Shew_1868 2147469 - 2145832 - | methyl-accepting chemotaxis sensory transducer TERM 2068 2146140 - 2146150 + g 71 -6.8 -4.24204 | TGCTGTGCATCACGT TGGC GAC GCCA TTTTGAATATCAGTG TERM 2069 2147549 - 2147566 + H 71 -4.9 -4.51994 | opp_overlap 2147549 2147551, overlap 2147542 2147551 TGCGGTGGCAACGAA TAGTCAA TCGA TTGACTG TTTATTGTTAATTAA TERM 2070 2147829 - 2147839 + H 80 -5.4 -5.07567 | ATAGCGCGCAGAATG GAGT ATG ACTC TTTTTTGACATGTGA Shew_1869 2147862 - 2148554 + | hypothetical protein TERM 2071 2148567 - 2148590 + F 74 -8 -4.12532 | overlap 2148569 TAATCGAGCTTCTTA AGGGGCGGGC GTTG GCTCGCCCTG TTTGTGTATAACAAG TERM 2072 2148569 - 2148588 + F 95 -12.8 -3.65996 | overlap 2148567 ATCGAGCTTCTTAAG GGGCGGGC GTTG GCTCGCCC TGTTTGTGTATAACA TERM 2073 2149311 - 2149287 - g 76 -4.1 -4.96848 | overlap 2149289 GCCGCTACAGAAAAA CCTGCAGGTGG ATG CCATCAGCACG GAAAGCTCGGGCTTC Shew_1870 2148619 - 2149647 + | LacI family transcription regulator Shew_1871 2150258 - 2149644 - | DNA polymerase III, epsilon subunit TERM 2074 2150296 - 2150319 + r 91 -9.7 -4.72272 | opp_overlap 2150296 ACACAAAAGAAAAAA CCCTAACAA CATACA TTGTTAGGG TTTTTAGTAAAGAAA TERM 2075 2150319 - 2150296 - R 100 -10.4 -5.8901 | opp_overlap 2150296 ACACAAAAGAAAAAA CCCTAACAAC ATAC ATTGTTAGGG TTTTTAGTAAAGAAA TERM 2076 2150340 - 2150365 + r 74 -7.7 -4.02911 | AGTAAAGAAACTTCA GTTAAGGAGTA AGAT TACTTCTTAGC TTCTCTTTCTTTAAC Shew_1872 2152438 - 2150354 - | elongation factor G TERM 2077 2152918 - 2152900 - R 100 -10.3 -5.28942 | opp_overlap 2152900 2152900 CAGGGCAAAGAAAAA GCCAGTC GCTTG GACTGGC TTTGGGGACTGGCTT TERM 2078 2152900 - 2152918 + r 77 -10.3 -3.5594 | opp_overlap 2152900, overlap 2152900 CAGGGCAAAGAAAAA GCCAGTC GCTTG GACTGGC TTTGGGGACTGGCTT Shew_1873 2155483 - 2152982 - | glucan 1,4-alpha-glucosidase TERM 2079 2154796 - 2154848 + g 73 -12.8 -2.71144 | gap 1, overlap 2154798 2154815 GCACGCTGGAATCTT TATCGCCCGTGTAGGCGAAGA-GGC TGTT GCCATCTTGGCTCACGCTGGCGATA TCGTTGGCGCCGCTG TERM 2080 2154798 - 2154846 + g 70 -11 -2.90075 | gap 1, overlap 2154796 2154815 ACGCTGGAATCTTTA TCGCCCGTGTAGGCGAAGA-GGC TGTT GCCATCTTGGCTCACGCTGGCGA TATCGTTGGCGCCGC Shew_1874 2157148 - 2155574 - | major facilitator transporter TERM 2081 2157253 - 2157215 - R 84 -6.7 -5.08824 | overlap 2157217 GGTCGAGTGAAAAAA GAGGCGAATACACGCTT CCCTC AAACGGGTATTCGCCAA AAGCTAGGGTTCTAC TERM 2082 2157251 - 2157217 - R 100 -13.7 -4.17608 | overlap 2157215 TCGAGTGAAAAAAGA GGCGAATACACGCTT CCCTC AAACGGGTATTCGCC AAAAGCTAGGGTTCT TERM 2083 2157904 - 2157885 - R 100 -11.4 -5.94713 | opp_overlap 2157885 ATGGGATAAAAAAAA CAGGCCGC GATA GCGACCTG TTTTTAGCTTAGTTT TERM 2084 2157885 - 2157904 + r 90 -9.2 -4.788 | opp_overlap 2157885 ATGGGATAAAAAAAA CAGGCCGC GATA GCGACCTG TTTTTAGCTTAGTTT Shew_1875 2159513 - 2157984 - | peptidase M28 TERM 2085 2159822 - 2159857 + r 79 -11.9 -2.7314 | opp_overlap 2159822, overlap 2159824 2159828 TTGCCAGAATAAGAA GAGGATGCAAGCCTG CCTGCA CAGACTTGCTTCCTC TAATGTGGTTTAAGC TERM 2086 2159857 - 2159822 - R 100 -14.8 -4.02817 | opp_overlap 2159822 2159824 2159828 TTGCCAGAATAAGAA GAGGATGCAAGCCTGC CTGC ACAGACTTGCTTCCTC TAATGTGGTTTAAGC Shew_1876 2162024 - 2159901 - | alpha-glucosidase TERM 2087 2162013 - 2162034 + g 79 -2.2 -5.25772 | TGTTAAGTGAGTCGA GGTGCAAG ACATTC CGTGTACC TTTTTATTGTCGTTT Shew_1877 2162552 - 2162956 + | glutathione-dependent formaldehyde-activating, GFA TERM 2088 2163781 - 2163797 + G 70 -10.9 -3.34902 | overlap 2163779 GGCCAGCGCCGTGCA GATAGGC AGC GCCTATC TCTTGTGTGATGAGG Shew_1878 2163071 - 2164156 + | 2-nitropropane dioxygenase, NPD TERM 2089 2164280 - 2164270 - g 77 -3.2 -5.07275 | CCACAGACAGAAAAA CCAG AGA CTGA AAAACAGGCGCTTGA TERM 2090 2164659 - 2164677 + G 71 -8.8 -3.73775 | ACTTGGCTTTAGCGT CGCAGGCA TTA TCCCTGCG TTTGATGGCAGTCCA Shew_1879 2164195 - 2164740 + | GCN5-related N-acetyltransferase Shew_1880 2164791 - 2165231 + | hypothetical protein Shew_1881 2165424 - 2165825 + | hypothetical protein Shew_1882 2167113 - 2165827 - | metal dependent phosphohydrolase Shew_1883 2167725 - 2167489 - | hypothetical protein Shew_1884 2168190 - 2169656 + | DEAD/DEAH box helicase domain-containing protein TERM 2091 2169685 - 2169669 - f 82 -12.3 -2.93878 | opp_overlap 2169669, overlap 2169657 TAAGATTTAACGAGA GCCCTCA GAT TGAGGGC TTTTTTACATCTGCA TERM 2092 2169669 - 2169685 + F 100 -12.3 -5.1287 | opp_overlap 2169669 2169657 TAAGATTTAACGAGA GCCCTCA GAT TGAGGGC TTTTTTACATCTGCA TERM 2093 2169693 - 2169716 + F 83 -7.5 -4.87291 | opp_overlap 2169657 TTGAGGGCTTTTTTA CATCTGCAG CATTCA TTGCAGATG TTTTTGATTGGCCTC TERM 2094 2169804 - 2169815 + F 77 -7.2 -4.32177 | overlap 2169803 2169802 ACTTCTGGATTGATT GCCG TAGG CGGC TTTGTTATCGGCTAA TERM 2095 2170128 - 2170138 + F 84 -6.8 -5.04249 | CTTCTATTTAAACTT GCGA TTC TCGC TTTGTTTTTTAAAAA Shew_1885 2170419 - 2171285 + | hypothetical protein TERM 2096 2171443 - 2171484 + T 72 -8.1 -3.93262 | opp_overlap 2171443 GAGTCGAAATCAAAA GCGAGTAGGCTGAGCGT GGTAATTA ATGCTTAATCTACTCGC TTTGATATCTTGAAG Shew_1886 2173512 - 2171509 - | alpha amylase, catalytic region Shew_1887 2175476 - 2173512 - | alpha amylase, catalytic region TERM 2097 2175601 - 2175628 + r 100 -12.8 -4.66953 | opp_overlap 2175601 AGCTTAATATGAAAA CACCTGCTTCAA GGGA TCGAAGCAGGTG TTTTTCGGCTATTAC TERM 2098 2175628 - 2175601 - R 100 -15 -4.43012 | opp_overlap 2175601 AGCTTAATATGAAAA CACCTGCTTCAA GGGA TCGAAGCAGGTG TTTTTCGGCTATTAC Shew_1888 2178478 - 2175650 - | TonB-dependent receptor, plug TERM 2099 2177122 - 2177132 + g 76 -5.4 -4.73613 | GGTCGAGTTTGTAGG CGAT CAG ATCG TTTTGTTGATCATAA TERM 2100 2177657 - 2177671 + g 77 -2.8 -5.12068 | opp_overlap 2177649 CATGTAACCGTCACG GGTG TCGGTAC CACC TTTTTGTTGCATCTC TERM 2101 2178917 - 2178930 + H 72 -8.1 -3.87318 | GGTATGCAACCCAGG GGCAG GCAC CTGCC TTTAATATAGTCGTT Shew_1889 2178964 - 2180589 + | alpha amylase, catalytic region TERM 2102 2180645 - 2180668 + F 75 -8.9 -3.6608 | opp_overlap 2180645, overlap 2180638 AATAGCTTGTCAGAA TAGCTGGCT CTCGTT AGCCGGCTA TTTGCATGAAATGAT TERM 2103 2180760 - 2180748 - g 74 -7.7 -4.23045 | overlap 2180739 CAATGATGCAACAAA GTAGC ACG GCTAC CGGGGTTGGCGGTGA Shew_1890 2180729 - 2181994 + | glucose/galactose transporter TERM 2104 2182038 - 2182057 + F 100 -12.2 -5.46657 | opp_overlap 2182036 2182043 2182046 AACCTATAATTCAGA GGCAAGCA GCAA TGCTTGCC TTTTTTATTGCCATA Shew_1891 2182111 - 2183367 + | Fmu (Sun) domain-containing protein TERM 2105 2184382 - 2184401 + G 78 -4.9 -4.95758 | overlap 2184386 2184395 2184397 2184399 AACAGCAATGATAGT TCGGCGC AGCTTG GCGGCGA TTTTTATCGTCTGCT TERM 2106 2184423 - 2184434 + G 72 -5.8 -4.41616 | overlap 2184409 2184408 TCGTCTGCTGTTTGC CAGC GGTC GCTG TTTCTTTGGCAAGGT TERM 2107 2185958 - 2185919 - g 70 -10 -3.46144 | gap 1, opp_overlap 2185952, overlap 2185917 AGACCATCAAGAACA GTC-GCAGCCGTATCACTA AGT TGGTGAACCGGCTGCAGAC CCAGCATCGTCTCTG Shew_1892 2183542 - 2187027 + | SNF2-related protein Shew_1893 2187505 - 2187086 - | hypothetical protein TERM 2108 2188791 - 2188807 + G 70 -10.1 -3.53091 | overlap 2188804 ATGGAGGAGAGTGAG CGTCTGG TCG CCAGGCG TTTGCAGAAAAGCCT Shew_1894 2187732 - 2189663 + | hypothetical protein TERM 2109 2190299 - 2190318 + G 71 -9.2 -3.78419 | GCCGGCCACTTTAAT CTGCAGGG GATG CCCAGCAG TTATCTGTTTGATGC Shew_1895 2189873 - 2190442 + | redoxin domain-containing protein Shew_1896 2190432 - 2190650 + | putative lipoprotein TERM 2110 2191722 - 2191740 + G 74 -6.6 -4.3586 | GACCAAGGGTGCCTT GGATAGCG GCG CGCTGACC TTTTCCTATCGCTAC Shew_1897 2190811 - 2192133 + | hypothetical protein TERM 2111 2192163 - 2192193 + G 78 -11.9 -3.50393 | GGTCTTAAATTGTCG CCGCTTGCTGATC TAGAC GATCAACAGGCGG TTATCTCGGATGAAA Shew_1898 2192157 - 2193149 + | ApbE family lipoprotein TERM 2112 2193902 - 2193876 - g 70 -10.9 -3.36557 | gap 1, opp_overlap 2193866 2193879, overlap 2193853 2193879 2193881 AACCAGGCCAAGCAA TAG-GACCCGCG CAAG CGCGGGCCTCTA TTGGCGGCGTTATTG TERM 2113 2193898 - 2193879 - g 72 -12.8 -2.54574 | opp_overlap 2193866 2193879, overlap 2193876 2193881 CAGGCCAAGCAATAG GACCCGCG CAAG CGCGGGCC TCTATTGGCGGCGTT TERM 2114 2193896 - 2193881 - g 71 -11.8 -2.80699 | opp_overlap 2193879 2193866, overlap 2193879 2193876 GGCCAAGCAATAGGA CCCGCG CAAG CGCGGG CCTCTATTGGCGGCG Shew_1899 2193844 - 2194353 + | hypothetical protein TERM 2115 2194972 - 2194985 + T 100 -9.5 -5.40474 | opp_overlap 2194972 GCGCCCATAAAAAAA CGCCC CGTA GGGCG TTTTTTTGCAGAACT TERM 2116 2194985 - 2194972 - T 100 -9.5 -5.60993 | opp_overlap 2194972 GCGCCCATAAAAAAA CGCCC CGTA GGGCG TTTTTTTGCAGAACT asnC 2196405 - 2195005 - | asparaginyl-tRNA synthetase TERM 2117 2196317 - 2196296 - G 71 -4.4 -4.66987 | overlap 2196285 TATACGGCAAGAAAA GAGATGCC GGCCTT GGAATCTC GGCGAGTTCTTACCC Shew_1901 2196652 - 2196987 + | hypothetical protein Shew_1902 2197668 - 2197099 - | NUDIX hydrolase Shew_1903 2199119 - 2197686 - | para-aminobenzoate synthase, subunit I TERM 2118 2200199 - 2200181 - g 71 -12.4 -2.88427 | opp_overlap 2200184 AAGATTGGCCAGAGA TCACCCGC GAA GCGGGCGA GGGCGTACGCCGCGT TERM 2119 2200297 - 2200281 - g 72 -10.9 -3.53012 | CGTGCTGCTGCTAAA CGGTAAG ATG CTTACCG GTCGTGACGCGGCGC Shew_1904 2199247 - 2200770 + | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit TERM 2120 2200793 - 2200835 + F 77 -2.2 -5.35815 | gap 3, overlap 2200798 TAAAGCATGAAGAAG TGGGTGGGTTTTAGGTGAGTC AGGC GACTTGCTT--AACCC-CCCA TTTTTGTTTAGTGTC Shew_1905 2200934 - 2202991 + | peptidase S9 prolyl oligopeptidase TERM 2121 2203073 - 2203055 - T 100 -13.2 -5.58522 | opp_overlap 2203055 CATAGAAAATAAAAA GCCAGAAC TCA GTTCTGGC TTTTTTGTGTGTTTT TERM 2122 2203055 - 2203073 + T 100 -13.2 -5.53079 | opp_overlap 2203055 CATAGAAAATAAAAA GCCAGAAC TCA GTTCTGGC TTTTTTGTGTGTTTT Shew_1906 2203593 - 2203180 - | GCN5-related N-acetyltransferase Shew_1907 2203874 - 2204302 + | glutathione-dependent formaldehyde-activating, GFA Shew_1908 2205021 - 2204395 - | hypothetical protein Shew_1909 2206188 - 2205526 - | 2OG-Fe(II) oxygenase TERM 2123 2206362 - 2206378 + r 95 -12.3 -3.70037 | opp_overlap 2206362 GAGAGGCATAAAAAA GGTGCTC TAT GAGCACC TTTAGCTAATGATTA TERM 2124 2206378 - 2206362 - R 100 -12.3 -5.29782 | opp_overlap 2206362 GAGAGGCATAAAAAA GGTGCTC TAT GAGCACC TTTAGCTAATGATTA Shew_1910 2209055 - 2206437 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 2125 2208922 - 2208955 + g 70 -5.2 -4.3898 | gap 2, opp_overlap 2208919, overlap 2208923 GCCAGGGATATACGG GCAT-CG-GCCGCCGC CAGG GCGGCGGCGCGGAAGA TTTTATCGACCTGCT TERM 2126 2209102 - 2209077 - H 91 -6.3 -5.40474 | opp_overlap 2209077 ATCCTTGGAAAAAAA TTTAGCGAAAA TTGG TTTTGGCTAAA TTCTCTTTATGAAGG TERM 2127 2209207 - 2209186 - H 71 -4.5 -4.72029 | opp_overlap 2209204, overlap 2209189 2209204 GTTAATGTAATAAAA TAACATTGT GAGC ACAATGTGA CGGCTTTCACTGGGT TERM 2128 2209204 - 2209189 - H 76 -6.2 -4.45817 | overlap 2209186 AATGTAATAAAATAA CATTGT GAGC ACAATG TGACGGCTTTCACTG TERM 2129 2209381 - 2209399 + G 91 -4.7 -5.5074 | GGAGATGACATTGGA TTTAACA CTTTA TGTTAAA TTTTTTCTTGGCTTG Shew_1911 2209370 - 2210011 + | hypothetical protein TERM 2130 2210094 - 2210044 - T 77 -3.5 -5.27335 | opp_overlap 2210050 2210050 2210062, overlap 2210056 2210062 TCTGGTAAAGAAAAA GTCTCAGG-ATAAGAAAAACGCGCA CGG TGCGCGTTTTT-TTATGCCTATTTC CTTAGTGTCTCTTGG TERM 2131 2210050 - 2210087 + T 82 -12.3 -2.74026 | gap 1, opp_overlap 2210044 2210056 2210062, overlap 2210050 2210062 AAAGAAAAAGTCTCA GGATAAGAAAAACGCGCA CGG TGCGCGTTTTT-TTATGC CTATTTCCTTAGTGT TERM 2132 2210050 - 2210088 + T 89 -12.1 -3.57915 | opp_overlap 2210044 2210056 2210062, overlap 2210050 2210062 AAAGAAAAAGTCTCA GG-ATAAGAAAAACGCGCA CGG TGCGCGTTTTT-TTATGCC TATTTCCTTAGTGTC TERM 2133 2210082 - 2210056 - T 90 -12.4 -3.41795 | opp_overlap 2210050 2210050 2210062, overlap 2210044 2210062 AAAGTCTCAGGATAA GAAAAACGCGCA CGG TGCGCGTTTTTT TATGCCTATTTCCTT TERM 2134 2210076 - 2210062 - T 100 -11.4 -5.22006 | opp_overlap 2210050 2210050 2210062, overlap 2210056 2210044 TCAGGATAAGAAAAA CGCGCA CGG TGCGCG TTTTTTTATGCCTAT TERM 2135 2210062 - 2210076 + T 100 -11.4 -5.65177 | opp_overlap 2210062 2210056 2210044, overlap 2210050 2210050 TCAGGATAAGAAAAA CGCGCA CGG TGCGCG TTTTTTTATGCCTAT Shew_1912 2211443 - 2210118 - | deoxyguanosinetriphosphate triphosphohydrolase-like protein Shew_1913 2212059 - 2211472 - | hypothetical protein TERM 2136 2212310 - 2212337 + r 72 -5.6 -4.56702 | opp_overlap 2212316, overlap 2212315 2212316 TTGGTATTAAAAATA AAAAAAGCGATC CTGA GATCGCCTTTTC TTTGTTTAGTTACAG TERM 2137 2212315 - 2212332 + r 83 -5.5 -5.20222 | opp_overlap 2212316, overlap 2212310 2212316 ATTAAAAATAAAAAA AGCGATC CTGA GATCGCC TTTTCTTTGTTTAGT TERM 2138 2212316 - 2212331 + r 75 -9 -3.69693 | opp_overlap 2212316, overlap 2212315 2212310 TTAAAAATAAAAAAA GCGATC CTGA GATCGC CTTTTCTTTGTTTAG TERM 2139 2212331 - 2212316 - R 100 -9 -6.20267 | opp_overlap 2212316 2212315 2212310 TTAAAAATAAAAAAA GCGATC CTGA GATCGC CTTTTCTTTGTTTAG Shew_1914 2213576 - 2212362 - | aminotransferase AlaT TERM 2140 2213753 - 2213739 - R 79 -2.8 -5.42198 | TGTTAAAAAATAAAA CAGAGT ATT ATTCTG GCGTGTTTGCTGTTG TERM 2141 2213806 - 2213834 + r 85 -11.8 -3.36492 | opp_overlap 2213811, overlap 2213811 TCAGCTTAAGGCACA AAAAAGCCAGCG AATTA CGCTGGCTTTTA TTATCGAGTTAACGG TERM 2142 2213811 - 2213829 + r 100 -11.7 -4.78839 | opp_overlap 2213811, overlap 2213806 TTAAGGCACAAAAAA GCCAGCG AATTA CGCTGGC TTTTATTATCGAGTT TERM 2143 2213829 - 2213811 - R 100 -11.7 -5.31456 | opp_overlap 2213811 2213806 TTAAGGCACAAAAAA GCCAGCG AATTA CGCTGGC TTTTATTATCGAGTT Shew_1915 2214415 - 2213855 - | elongation factor P Shew_1916 2215632 - 2214463 - | hypothetical protein TERM 2144 2215804 - 2215818 + r 91 -8.5 -4.93898 | opp_overlap 2215804 TCAGGGCTAAAAAAA GCGGC TATTC GCCGC TTTTTATACTGATGT TERM 2145 2215818 - 2215804 - R 100 -8.5 -5.42259 | opp_overlap 2215804 TCAGGGCTAAAAAAA GCGGC TATTC GCCGC TTTTTATACTGATGT Shew_1917 2216371 - 2215844 - | flavodoxin FldA Shew_1918 2216694 - 2216422 - | LexA regulated protein Shew_1919 2216927 - 2216706 - | hypothetical protein TERM 2146 2216774 - 2216760 - G 73 -9.2 -3.91897 | GCCCTTAGCTATAAA CCCGGC ACA GCCGAG AAATAATACTAACCA Shew_1920 2217776 - 2217009 - | alpha/beta hydrolase fold Shew_1921 2218068 - 2218598 + | replication initiation regulator SeqA Shew_1922 2218643 - 2220322 + | phosphoglucomutase TERM 2147 2220416 - 2220432 + T 100 -12.3 -5.61596 | opp_overlap 2220416 AGACAAAATAATAAA GCCAGTG ATT CACTGGC TTTTTTTGTGGGCGT TERM 2148 2220432 - 2220416 - T 100 -12.3 -4.73973 | opp_overlap 2220416 AGACAAAATAATAAA GCCAGTG ATT CACTGGC TTTTTTTGTGGGCGT Shew_1923 2220960 - 2220481 - | peptide methionine sulfoxide reductase Shew_1924 2221280 - 2222347 + | succinylglutamate desuccinylase Shew_1925 2222531 - 2223709 + | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) Shew_1926 2223713 - 2224690 + | transketolase, central region Shew_1927 2224702 - 2226264 + | dihydrolipoamide acetyltransferase TERM 2149 2226289 - 2226306 + F 100 -8.4 -5.93809 | opp_overlap 2226289 GCAGTTCACTAATAA GAGCGC AATTTG GCGCTC TTTTTTTTCTCCAGA TERM 2150 2226306 - 2226289 - f 75 -8.4 -3.7282 | opp_overlap 2226289 GCAGTTCACTAATAA GAGCGC AATTTG GCGCTC TTTTTTTTCTCCAGA Shew_1928 2226384 - 2227451 + | quinolinate synthetase TERM 2151 2227508 - 2227494 - f 80 -8.5 -4.19238 | opp_overlap 2227494 TTGCTAACGTTAAAA GCGCC TTTAG GGCGC TTTTTTGTTGCCTAT TERM 2152 2227494 - 2227508 + F 100 -9.2 -5.49234 | opp_overlap 2227494 TTGCTAACGTTAAAA GCGCCT TTA GGGCGC TTTTTTGTTGCCTAT TERM 2153 2228635 - 2228594 - g 70 -9.5 -3.53224 | gap 1, opp_overlap 2228616, overlap 2228595 2228598 GACTGGTTTGCCAAA TCCACCGCCCGAATTGACGC CCT GCGTCAGTTCGAGC-GTCAA CTGTCACATCATCTG TERM 2154 2228632 - 2228598 - g 80 -15 -2.64155 | opp_overlap 2228616, overlap 2228594 2228595 GGTTTGCCAAATCCA CCGCCCGAATTGACGC CCT GCGTCAGTTCGAGCGT CAACTGTCACATCAT Shew_1929 2227766 - 2229754 + | methyl-accepting chemotaxis sensory transducer TERM 2155 2229992 - 2230007 + F 100 -10.4 -5.65177 | opp_overlap 2229992 ACATTCAATAAGAAA GACGCC TAAG GGCGTC TTTTTTTATGCCTGT TERM 2156 2230007 - 2229992 - f 89 -10.4 -4.47456 | opp_overlap 2229992 ACATTCAATAAGAAA GACGCC TAAG GGCGTC TTTTTTTATGCCTGT Shew_1930 2230307 - 2230504 + | CopG/DNA-binding domain-containing protein TERM 2157 2230653 - 2230639 - f 72 -7.2 -4.05926 | GAAGAAAGCCACAAA GTCATT CTA AATGAC AGGCCGGATACTTAG Shew_1931 2230705 - 2231049 + | alkylphosphonate utilization operon protein PhnA TERM 2158 2231112 - 2231131 + T 100 -11.4 -5.03994 | opp_overlap 2231112 AAGAATCAATAAAAA GACCTGCC AGCT GGCGGGTC TTTTTGTATCTAAGC TERM 2159 2231131 - 2231112 - T 100 -9.2 -5.23396 | opp_overlap 2231112 AAGAATCAATAAAAA GACCTGCC AGCT GGCGGGTC TTTTTGTATCTAAGC cls 2232814 - 2231216 - | cardiolipin synthetase TERM 2160 2232829 - 2232844 + H 78 -5.4 -4.95155 | overlap 2232831 TATAGGCTAAGCTGC TGGTGC TAAA GCACTA TTTTTATCATCTAGA Shew_1933 2232895 - 2233773 + | endonuclease/exonuclease/phosphatase Shew_1934 2234548 - 2233820 - | hypothetical protein TERM 2161 2235152 - 2235137 - g 74 -4.6 -4.75219 | GAATCATGAAGAAAA GCGTCA TTGC TGCCGC CATCGTCCTGGGGCT Shew_1935 2235127 - 2236905 + | hypothetical protein TERM 2162 2236924 - 2236939 + F 100 -11.8 -5.36441 | CAACTTGTCTTTAAG GGCCCC AAAA GGGGCC TTTTTTATGTCGCGA TERM 2163 2237036 - 2237062 + F 100 -14 -3.67597 | opp_overlap 2237036 GACGAGTTAATGTAA CCTTAATGATAA CTA TTATCATTAAGG TTCTTAAATGGAAAG TERM 2164 2237062 - 2237036 - f 93 -14 -3.19668 | opp_overlap 2237036 GACGAGTTAATGTAA CCTTAATGATAA CTA TTATCATTAAGG TTCTTAAATGGAAAG Shew_1936 2237070 - 2237750 + | two component transcriptional regulator Shew_1937 2237876 - 2239003 + | peptidase M14, carboxypeptidase A Shew_1938 2239013 - 2239330 + | hypothetical protein Shew_1939 2239327 - 2239608 + | hypothetical protein TERM 2165 2239618 - 2239635 + T 100 -12.7 -5.64421 | opp_overlap 2239618 CTCTAAGAGTGAAAA GCCCCTG ATGA CAGGGGC TTTTTTATTTCGCAT TERM 2166 2239635 - 2239618 - T 100 -12.7 -4.28254 | opp_overlap 2239618 CTCTAAGAGTGAAAA GCCCCTG ATGA CAGGGGC TTTTTTATTTCGCAT ansA 2240681 - 2239668 - | cytoplasmic asparaginase I TERM 2167 2240741 - 2240766 + r 79 -11.9 -2.81187 | opp_overlap 2240746, overlap 2240746 AGGATGGCGCCAATA AAAAAGCCCGC ATTG GCGGGCTTTTC TGTGATAGCGTCTTT TERM 2168 2240746 - 2240761 + r 100 -11.8 -4.57353 | opp_overlap 2240746, overlap 2240741 GGCGCCAATAAAAAA GCCCGC ATTG GCGGGC TTTTCTGTGATAGCG TERM 2169 2240761 - 2240746 - R 100 -11.8 -5.4505 | opp_overlap 2240741 2240746 GGCGCCAATAAAAAA GCCCGC ATTG GCGGGC TTTTCTGTGATAGCG Shew_1941 2242644 - 2240803 - | signal peptide peptidase SppA, 67K type TERM 2170 2244738 - 2244723 - g 74 -4.6 -4.82667 | CGATGAGATGAAAAA CACAGG TCTG CCAGTG CATCTGATTGGCGGT Shew_1942 2242810 - 2244825 + | NADH:flavin oxidoreductase/NADH oxidase TERM 2171 2244875 - 2244893 + F 100 -9.6 -5.70829 | opp_overlap 2244875 TGTTAAAGGTGAAAA GCTAATCC TTT GGGTTAGC TTTTTTTATGGTCTT TERM 2172 2244893 - 2244875 - f 74 -7.4 -4.24002 | opp_overlap 2244875 TGTTAAAGGTGAAAA GCTAATCC TTT GGGTTAGC TTTTTTTATGGTCTT TERM 2173 2245226 - 2245211 - g 70 -10.4 -3.22951 | overlap 2245209 CACACCTGGATAATA TCGGCC GACT GGCCGA GGAGGGTAAACTGGT Shew_1943 2244949 - 2245449 + | hypothetical protein Shew_1944 2246110 - 2245730 - | ferredoxin nrdB 2247209 - 2246079 - | ribonucleotide-diphosphate reductase subunit beta TERM 2174 2247243 - 2247229 - R 100 -12.8 -3.86346 | CTATCTTCCGATAAA GGGGGC AAA GCCCCC TGATAAAAGGTTAAA Shew_1946 2249557 - 2247269 - | ribonucleotide-diphosphate reductase subunit alpha TERM 2175 2249656 - 2249645 - R 77 -2.2 -5.46629 | AAGATGTTAAAAAAA GTAC CTGA GCAC TACTGCAGTTCTAGT TERM 2176 2249910 - 2249922 + r 85 -7.7 -4.65895 | CTAAAATATTGGCCA GATCC CCG GGATC TTTTTGCGTCGAAAA Shew_1947 2250757 - 2250038 - | HAD family hydrolase Shew_1948 2251538 - 2250750 - | 3-demethylubiquinone-9 3-methyltransferase Shew_1949 2251792 - 2254431 + | DNA gyrase, A subunit TERM 2177 2254448 - 2254469 + F 100 -13.7 -4.86731 | opp_overlap 2254444 2254448 GTTTAGCGAAATTAA CGGGCGTCC TTAT GGACGCTCG TTTTGTTTCGGCAAG TERM 2178 2254469 - 2254448 - f 85 -11.5 -3.54408 | opp_overlap 2254448, overlap 2254444 GTTTAGCGAAATTAA CGGGCGTCC TTAT GGACGCTCG TTTTGTTTCGGCAAG TERM 2179 2254915 - 2254898 - g 81 -3.3 -5.2166 | overlap 2254889 2254899 GAAGAAGCCAAAAAA CTGGCCG GCGA CGCCCAA ATAGATACATTAAAC TERM 2180 2254956 - 2254944 - g 77 -2.7 -5.02476 | ACATTGTCGAAAAAA CTAAT GGT ATCAG CCGTATCGTGGTGCC TERM 2181 2255438 - 2255428 - g 77 -8.2 -4.26076 | opp_overlap 2255428 CGATTTCTATGAAAA CCGC GTC GCGG TTGCTAACCGCTCGA Shew_1950 2254562 - 2255656 + | phosphoserine aminotransferase TERM 2182 2255749 - 2255720 - T 100 -13.7 -4.93547 | opp_overlap 2255726, overlap 2255726 TCAATGAATCAAAAA CAAAAAGGGGACC AAAT GGTCCCCTTTTTT TATGAGTTTTCAGGC TERM 2183 2255743 - 2255726 - T 100 -12.7 -5.67529 | opp_overlap 2255726, overlap 2255720 AATCAAAAACAAAAA GGGGACC AAAT GGTCCCC TTTTTTTATGAGTTT TERM 2184 2255726 - 2255743 + T 100 -12.7 -5.68039 | opp_overlap 2255720 2255726 AATCAAAAACAAAAA GGGGACC AAAT GGTCCCC TTTTTTTATGAGTTT Shew_1951 2256959 - 2255769 - | aromatic amino acid aminotransferase Shew_1952 2257349 - 2258629 + | 3-phosphoshikimate 1-carboxyvinyltransferase Shew_1953 2258806 - 2259498 + | cytidylate kinase rpsA 2259598 - 2261265 + | 30S ribosomal protein S1 Shew_1955 2261338 - 2261625 + | integration host factor, beta subunit TERM 2185 2261644 - 2261657 + F 100 -8.1 -5.64274 | opp_overlap 2261644 2261643 ACATTGTTTTAAAAG CCTCC GAAA GGAGG TTTTTTTATGCCTAA Shew_1956 2261736 - 2262065 + | hypothetical protein Shew_1957 2262067 - 2263227 + | hypothetical protein Shew_1958 2263263 - 2263958 + | orotidine 5'-phosphate decarboxylase Shew_1959 2264022 - 2264837 + | short chain dehydrogenase Shew_1960 2264876 - 2265418 + | hypothetical protein TERM 2186 2265453 - 2265473 + F 100 -7.5 -5.64421 | opp_overlap 2265453 GCTGTAACTTAAGAA GCCTCGC AAATTAC GCGGGGC TTTTTTATTTGCGAT TERM 2187 2265539 - 2265560 + F 70 -8.9 -3.27525 | opp_overlap 2265539 2265541 GCCGTAACTGAGATA GATTAAAAC GACT GTTTTAATC TTACGTTTGAGAGAG Shew_1961 2265581 - 2267332 + | acyl-CoA dehydrogenase domain-containing protein TERM 2188 2267391 - 2267346 - T 81 -11.3 -3.13728 | gap 1, opp_overlap 2267357, overlap 2267352 2267357 AGCAGCTAGATTTAA TAAAACGAAAACGCCCGGTTCC ATA GGC-CCGGGCGTTTTTATTTCA CCTATTTTACTAAGC TERM 2189 2267385 - 2267352 - T 76 -10.3 -3.41378 | gap 1, opp_overlap 2267357, overlap 2267346 2267357 TAGATTTAATAAAAC GAAAACGCCCGGTTCC ATA GGC-CCGGGCGTTTTT ATTTCACCTATTTTA TERM 2190 2267380 - 2267357 - T 91 -10.2 -4.78029 | gap 1, opp_overlap 2267357, overlap 2267352 2267346 TTAATAAAACGAAAA CGCCCGGTTCC ATA GGC-CCGGGCG TTTTTATTTCACCTA TERM 2191 2267357 - 2267380 + T 100 -11.6 -5.28942 | opp_overlap 2267357 2267352 2267346 TTAATAAAACGAAAA CGCCCGGTTC CATA GGCCCGGGCG TTTTTATTTCACCTA Shew_1962 2269071 - 2267440 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase Shew_1963 2269282 - 2269106 - | hypothetical protein Shew_1964 2269513 - 2269845 + | hypothetical protein pssA 2269857 - 2271170 + | phosphatidylserine synthase TERM 2192 2271247 - 2271224 - f 82 -6.7 -4.9218 | opp_overlap 2271226, overlap 2271226 GAGTTAGCATAAAAA CAGGCGAAC ATCATG GTTCGCCTT TTTTATGAATGAGAT TERM 2193 2271226 - 2271245 + F 100 -9.3 -5.28176 | opp_overlap 2271226 2271224 GTTAGCATAAAAACA GGCGAAC ATCATG GTTCGCC TTTTTTATGAATGAG TERM 2194 2271245 - 2271226 - f 80 -9.3 -4.08042 | opp_overlap 2271226, overlap 2271224 GTTAGCATAAAAACA GGCGAAC ATCATG GTTCGCC TTTTTTATGAATGAG Shew_1966 2271340 - 2272089 + | DTW domain-containing protein Shew_1967 2273950 - 2272733 - | amidohydrolase TERM 2195 2273381 - 2273368 - G 70 -5.2 -4.3739 | overlap 2273369 2273370 TACCCTTTGAGAAAA CGCC GCCGGT GGCG CAGATCTTAATGGCA Shew_1968 2275367 - 2274225 - | beta-lactamase TERM 2196 2274791 - 2274822 + g 71 -6.6 -4.29738 | gap 1 GGCCGCTTTCCTGCT CGATCGCCTGCTC GATAAAG GAGAAGGCGA-CG TTTTGATAGCTGTAA Shew_1969 2276211 - 2275612 - | two component LuxR family transcriptional regulator TERM 2197 2275851 - 2275867 + g 70 -3 -4.7254 | gap 1, opp_overlap 2275865 GCTGGTAGGCGTCAA GGC-TCA TCAA TGAAGCC TTTTTCATCAAGGCT TERM 2198 2275891 - 2275905 + g 70 -3.4 -4.83615 | overlap 2275892 2275893 CAAGGCTTGGAGTTT GTCGCC ATC GGCGGG TTTTTCTAAGAAGTC Shew_1970 2277934 - 2276204 - | histidine kinase TERM 2199 2278184 - 2278207 + r 76 -11.1 -3.08197 | opp_overlap 2278182, overlap 2278165 CTGATACCAATATCG GCTATCGCT TTTTCT AGCGATAGC TCTCTGTCTGTCGCA Shew_1971 2279660 - 2278482 - | ApbE family lipoprotein TERM 2200 2279722 - 2279736 + H 74 -3.6 -5.06414 | TCTTACTGTGAAATA TAAACA GGA TGTTTG TTTTTGTTAAGCAGA TERM 2201 2280804 - 2280794 - g 72 -2.4 -4.8622 | opp_overlap 2280794 CTCGTTAACGAAAAA GGCC GCT GGAC TGGTATCACGGCGAT Shew_1972 2279858 - 2281207 + | FMN-binding domain-containing protein Shew_1973 2281228 - 2282277 + | porin TERM 2202 2282303 - 2282318 + F 70 -10.4 -2.57211 | opp_overlap 2282295, overlap 2282302 ATTAAAATGCCCCCC GGCGCA TGGA TGCGCC ATTATCGACCCACCT Shew_1974 2282437 - 2283003 + | hypothetical protein Shew_1975 2283239 - 2284159 + | putative manganese-dependent inorganic pyrophosphatase TERM 2203 2284179 - 2284209 + T 85 -11.3 -3.44222 | opp_overlap 2284186, overlap 2284186 GGTAATCGCCCAGAT AAAAAAAGCCGGT CTCGT ACCGGCTTTTTTA TTGGTTAATGATTTG TERM 2204 2284202 - 2284186 - T 100 -9.4 -5.71712 | opp_overlap 2284186 2284179 GCCCAGATAAAAAAA GCCGGT CTCGT ACCGGC TTTTTTATTGGTTAA TERM 2205 2284186 - 2284202 + T 100 -9.4 -5.5604 | opp_overlap 2284186, overlap 2284179 GCCCAGATAAAAAAA GCCGGT CTCGT ACCGGC TTTTTTATTGGTTAA Shew_1976 2286653 - 2284251 - | putative ATP-dependent protease La-relatedprotein Shew_1977 2286966 - 2287901 + | diguanylate cyclase with PAS/PAC sensor Shew_1978 2288325 - 2289239 + | hypothetical protein TERM 2206 2289298 - 2289260 - f 76 -10.4 -3.38604 | opp_overlap 2289270, overlap 2289253 2289264 CACCAAAAGTATTAA CCAATAGAAAGGCTTAGT GCT ACTGGGCCTTTCTATCAG ATAAGGCTTTCATTA TERM 2207 2289294 - 2289264 - f 75 -9.8 -3.44825 | opp_overlap 2289270, overlap 2289260 2289253 AAAAGTATTAACCAA TAGAAAGGCTTAGT GCT ACTGGGCCTTTCTA TCAGATAAGGCTTTC TERM 2208 2289270 - 2289288 + F 72 -7.4 -4.05033 | opp_overlap 2289264 2289260 2289253 ATTAACCAATAGAAA GGCTTAGT GCT ACTGGGCC TTTCTATCAGATAAG Shew_1979 2289313 - 2290248 + | putative dienelactone hydrolase-related enzyme TERM 2209 2290270 - 2290306 + F 72 -5.9 -4.56597 | opp_overlap 2290253 2290269 2290270, overlap 2290272 CTTCTTACCAAAGAG GTGAACGTGTCCT GAACACTGCCG AGGGCACGTTCTC TTTTTACAAGGCAGC TERM 2210 2290272 - 2290304 + F 70 -7.1 -3.90048 | opp_overlap 2290270 2290269, overlap 2290270 TCTTACCAAAGAGGT GAACGTGTCCT GAACACTGCCG AGGGCACGTTC TCTTTTTACAAGGCA Shew_1980 2290386 - 2291042 + | hypothetical protein Shew_1981 2291029 - 2291928 + | AraC family transcriptional regulator TERM 2211 2293609 - 2293630 + T 100 -12.3 -3.81092 | overlap 2293618 GCTTTAGGCTCCCTA CCCGTGTCT GCCC GGACACGGG CTTTTTTGATTATTC TERM 2212 2293618 - 2293631 + T 100 -9.5 -5.39221 | overlap 2293609 TCCCTACCCGTGTCT GCCCG GACA CGGGC TTTTTTGATTATTCT Shew_1982 2294911 - 2293640 - | phage integrase family protein Shew_1983 2295234 - 2296805 + | response regulator receiver modulated metal dependent phosphohydrolase TERM 2213 2296940 - 2296950 + T 72 -6.8 -4.23213 | TAGATGAAGCTAGCT GCCT AAA AGGC TTTGTTCCATATAAG Shew_1984 2297495 - 2296998 - | hypothetical protein TERM 2214 2298457 - 2298468 + G 72 -5.8 -4.45738 | opp_overlap 2298457 2298456, overlap 2298410 TCGTACCTAAGCAAG CAGG TCGT CCTG TTTATTCTTACCGTC Shew_1985 2297760 - 2299187 + | cytochrome c oxidase, cbb3-type, subunit I Shew_1986 2299200 - 2299805 + | cytochrome c oxidase, cbb3-type, subunit II Shew_1987 2299821 - 2299988 + | Cbb3-type cytochrome oxidase component TERM 2215 2300090 - 2300080 - g 76 -6.8 -4.56597 | TGTTGTCTCTAAAAA CACC ACA GGTG TTGAAGAAGGCAAAT Shew_1988 2299988 - 2300959 + | cytochrome c oxidase, cbb3-type, subunit III TERM 2216 2300980 - 2301001 + F 100 -11.6 -5.82316 | opp_overlap 2300980 2300974 2300970 TATAAGTAACACCAA GGCCTCGA AACAGA TCGAGGCC TTTTTTTTAAGTGCT TERM 2217 2301001 - 2300980 - f 85 -11.6 -3.43218 | opp_overlap 2300980, overlap 2300974 2300970 TATAAGTAACACCAA GGCCTCGA AACAGA TCGAGGCC TTTTTTTTAAGTGCT TERM 2218 2301273 - 2301253 - g 77 -9.7 -3.92324 | opp_overlap 2301251, overlap 2301256 CTGCGTAAGATTAAA CACGCCAAG CAA CTTGGCTTG CAGTTTGAGTTGCAT Shew_1989 2301070 - 2301549 + | hypothetical protein TERM 2219 2303333 - 2303348 + G 71 -4.6 -4.63218 | ATGGCACCCGCTATT TCCTCG GCAG CGCGGA TTTTATTCGCCAAAA Shew_1990 2301556 - 2303979 + | heavy metal translocating P-type ATPase Shew_1991 2303976 - 2304161 + | cytochrome oxidase maturation protein, cbb3-type Shew_1992 2304158 - 2304850 + | hypothetical protein Shew_1993 2304906 - 2305655 + | fumarate/nitrate reduction transcriptional regulator TERM 2220 2305702 - 2305692 - f 72 -6.8 -4.21812 | opp_overlap 2305691 TTTGATCTAAAACAA GGCA ATT TGCC CTATATCGCTCATTA Shew_1994 2305750 - 2306682 + | universal stress protein UspE TERM 2221 2306728 - 2306757 + F 100 -8.5 -5.62045 | opp_overlap 2306728 TTTTAAGCTATACTA CGCGCCCAGAATT TTAC GATACTAGGCGCG TTTTTTATTATGTCT TERM 2222 2306757 - 2306728 - f 70 -10 -2.66733 | opp_overlap 2306728 TTTTAAGCTATACTA CGCGCCCAGAAT TTTACG ATACTAGGCGCG TTTTTTATTATGTCT TERM 2223 2306835 - 2306823 - g 88 -10.5 -4.51847 | AAACAAGCTACAAAA GCGCC TTA GGCGC GAAGTCGGTAGTGCC Shew_1995 2306767 - 2307720 + | PP-loop domain-containing protein TERM 2224 2307766 - 2307737 - T 89 -14.5 -2.89564 | opp_overlap 2307737 2307743 2307744, overlap 2307743 2307744 CGCTTATCTCAGATA TAAAAACGCCCTC AGTT GAGGGCATTTTTA TTATTCAGCTTCGCC TERM 2225 2307737 - 2307766 + T 95 -12.3 -3.68222 | opp_overlap 2307737 2307743 2307744, overlap 2307743 2307744 CGCTTATCTCAGATA TAAAAACGCCCTC AGTT GAGGGCATTTTTA TTATTCAGCTTCGCC TERM 2226 2307760 - 2307743 - T 93 -9.1 -5.03994 | opp_overlap 2307743 2307737 2307744, overlap 2307737 2307744 TCTCAGATATAAAAA CGCCCTC AGTT GAGGGCA TTTTTATTATTCAGC TERM 2227 2307743 - 2307760 + T 87 -6.9 -5.29445 | opp_overlap 2307737 2307743 2307744, overlap 2307737 2307744 TCTCAGATATAAAAA CGCCCTC AGTT GAGGGCA TTTTTATTATTCAGC TERM 2228 2307759 - 2307744 - T 78 -10.4 -3.61674 | opp_overlap 2307743 2307737 2307744, overlap 2307743 2307737 CTCAGATATAAAAAC GCCCTC AGTT GAGGGC ATTTTTATTATTCAG TERM 2229 2307744 - 2307759 + T 80 -10.4 -3.76582 | opp_overlap 2307744 2307743 2307737, overlap 2307743 2307737 CTCAGATATAAAAAC GCCCTC AGTT GAGGGC ATTTTTATTATTCAG Shew_1996 2308423 - 2307800 - | hypothetical protein Shew_1997 2309273 - 2308401 - | bax protein, putative Shew_1998 2309364 - 2310275 + | protein of unknown function UPF0052 and CofD TERM 2230 2310265 - 2310319 + T 74 -6.8 -4.30441 | gap 3, opp_overlap 2310281, overlap 2310279 2310281 CGCAAGCGCTCGATG CACTGGCATAA-AAAAACGCCACGTTA TTGC TAGCGTGGCGTCTTTGTTA-GTC-GTG TTTTACCTATTATAA TERM 2231 2310279 - 2310306 + T 88 -10.6 -4.28713 | opp_overlap 2310281, overlap 2310265 2310281 GCACTGGCATAAAAA AACGCCACGTTA TTGC TAGCGTGGCGTC TTTGTTAGTCGTGTT TERM 2232 2310304 - 2310281 - T 100 -11 -5.61596 | opp_overlap 2310281 2310279 2310265 ACTGGCATAAAAAAA CGCCACGTTA TTGC TAGCGTGGCG TCTTTGTTAGTCGTG TERM 2233 2310281 - 2310304 + T 100 -13.2 -3.73445 | opp_overlap 2310281, overlap 2310279 2310265 ACTGGCATAAAAAAA CGCCACGTTA TTGC TAGCGTGGCG TCTTTGTTAGTCGTG Shew_1999 2311531 - 2310338 - | aromatic amino acid aminotransferase TERM 2234 2311341 - 2311363 + g 74 -4.9 -4.7373 | ATACCCAGATAACTC TTGCTGG TTTCAGTTT CCAGCAA TTTTTGCTCGGCTAA TERM 2235 2311897 - 2311878 - R 82 -7.8 -4.52143 | opp_overlap 2311878 CCTAAATACAACAAA GCCCCACT TGTT AGCGAGGC TCTATTTAATCATAT TERM 2236 2311968 - 2311988 + r 72 -10.5 -2.89742 | overlap 2311952 2311971 TCACGCTGTTACCAG CGAGGGATT TTA AATCCCTTG TGTCTACCGATTCCA TERM 2237 2311971 - 2311985 + r 72 -8.6 -3.5947 | overlap 2311952 2311968 CGCTGTTACCAGCGA GGGATT TTA AATCCC TTGTGTCTACCGATT TERM 2238 2312140 - 2312158 + r 77 -10.4 -3.53563 | CTTTATCTGAAGCGG TTTACGGT GTC ACCGTAAA TTTGGAGCGACATAT TERM 2239 2312445 - 2312424 - R 100 -13.7 -5.76633 | opp_overlap 2312423 TTATAGATAAAAAAA CGCCCCGGT ACTT ACCGAGGCG CTTAGATTTATCTAG Shew_2000 2313906 - 2312470 - | glyceraldehyde-3-phosphate dehydrogenase Shew_2001 2314143 - 2314949 + | hypothetical protein TERM 2240 2314961 - 2314990 + F 89 -2.9 -5.75342 | gap 1, overlap 2314963 2314965 2314967 TTAATTGAGCCATTC TCCTTGCTGGCAAA ATG TTTGCCA-CTAGTA TTTTTTTTACAGAAA TERM 2241 2314963 - 2314988 + F 72 -5.5 -4.52949 | gap 1, overlap 2314961 2314965 2314967 AATTGAGCCATTCTC CTTGCTGGCAAA ATG TTTGCCA-CTAG TATTTTTTTTACAGA TERM 2242 2314993 - 2315027 + F 86 -13.2 -2.99719 | overlap 2315011 TTTGCCACTAGTATT TTTTTTACAGAAATCG GCT CGGTTTTTGTAAAAAA TCTGATCTTTGTAAA Shew_2002 2315161 - 2316171 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2243 2316205 - 2316221 + T 100 -9.4 -5.38047 | opp_overlap 2316205 TACATTCATAAAAAA GGAGCC TAAAT GGCTCC TTTTTTGTATCCGTC TERM 2244 2316221 - 2316205 - T 100 -9.4 -5.29782 | opp_overlap 2316205 TACATTCATAAAAAA GGAGCC TAAAT GGCTCC TTTTTTGTATCCGTC Shew_2003 2316621 - 2316289 - | hypothetical protein Shew_2004 2317099 - 2316824 - | hypothetical protein Shew_2005 2318545 - 2317214 - | FAD dependent oxidoreductase Shew_2006 2319172 - 2318606 - | GCN5-related N-acetyltransferase Shew_2007 2319294 - 2320373 + | hypothetical protein Shew_2008 2321150 - 2320455 - | short-chain dehydrogenase/reductase SDR Shew_2009 2321387 - 2322466 + | hypothetical protein Shew_2010 2323065 - 2324252 + | RND family efflux transporter MFP subunit TERM 2245 2325284 - 2325296 + G 70 -5.5 -4.46073 | CAGCATGAAAAGCGG CGCCA TCT TGGTG TTTATTATGTTGGCC Shew_2011 2324259 - 2327441 + | acriflavin resistance protein TERM 2246 2327493 - 2327462 - T 100 -16 -3.54741 | opp_overlap 2327469, overlap 2327420 2327467 2327469 TACCACTCGCTGAAA CAAAAGAGCCCGCT TTTT AGCGGGCTTTTTTG TAGCGCAGAGATAGC TERM 2247 2327488 - 2327467 - T 91 -10.1 -4.86731 | opp_overlap 2327469, overlap 2327420 2327462 2327469 CTCGCTGAAACAAAA GAGCCCGCT TTTT AGCGGGCTT TTTTGTAGCGCAGAG TERM 2248 2327469 - 2327486 + T 100 -12.7 -5.24129 | opp_overlap 2327420 2327467 2327462 2327469 CGCTGAAACAAAAGA GCCCGCT TTTT AGCGGGC TTTTTTGTAGCGCAG TERM 2249 2327486 - 2327469 - T 100 -12.7 -4.05678 | opp_overlap 2327469, overlap 2327420 2327467 2327462 CGCTGAAACAAAAGA GCCCGCT TTTT AGCGGGC TTTTTTGTAGCGCAG TERM 2250 2327588 - 2327609 + T 91 -8.7 -5.16841 | opp_overlap 2327589, overlap 2327589 AGCCATAACGAAAAA AGGCTTCCA TTTC TGGAAGCCC TTTTTCTTAATGTGG TERM 2251 2327608 - 2327589 - T 100 -12.2 -5.32944 | opp_overlap 2327589 2327588 GCCATAACGAAAAAA GGCTTCCA TTTC TGGAAGCC CTTTTTCTTAATGTG TERM 2252 2327589 - 2327608 + T 89 -12.2 -3.6902 | opp_overlap 2327589, overlap 2327588 GCCATAACGAAAAAA GGCTTCCA TTTC TGGAAGCC CTTTTTCTTAATGTG Shew_2012 2329085 - 2327793 - | inner membrane transport protein YdhC TERM 2253 2328508 - 2328523 + g 71 -7.6 -4.04394 | overlap 2328518 CTAATTGCCTCGTCG GCCTTA CTAT TAAGGC TTTCCTTGCTTTCGA Shew_2013 2329217 - 2330119 + | putative DNA-binding transcriptional regulator TERM 2254 2330495 - 2330516 + G 70 -5.1 -4.36716 | TCAGTCCTCTCATGT CTATCGGTC TGTC GATCGGTGG TTTCATTTTGTTGTT TERM 2255 2330559 - 2330547 - g 79 -10.5 -3.87815 | opp_overlap 2330555 TGTCACCCTGAGAAA GGCCG AGT CGGCC GCGGGGCTGTTTTGG Shew_2014 2330344 - 2331003 + | hypothetical protein TERM 2256 2331041 - 2331022 - f 100 -12.8 -3.87994 | opp_overlap 2331022 2331038 AGCTACGCTTAGAAA GCCCGCCC ACAT AGGCGGGC TTTTTTATGCCCTTT TERM 2257 2331022 - 2331041 + F 100 -12.1 -5.28826 | opp_overlap 2331022, overlap 2331038 AGCTACGCTTAGAAA GCCCGCC CACATA GGCGGGC TTTTTTATGCCCTTT TERM 2258 2331436 - 2331450 + G 83 -9.2 -4.52589 | opp_overlap 2331422, overlap 2331430 2331429 ACTGCGTATCGGCGG CGCTGC GCC GCGGCG TTTTATCTGCGGCCG Shew_2015 2331189 - 2331578 + | DsrE family protein Shew_2016 2331612 - 2331971 + | DsrE family protein Shew_2017 2331971 - 2332252 + | DsrH like protein Shew_2018 2332261 - 2332584 + | DsrC family protein TERM 2259 2332636 - 2332653 + T 100 -11.3 -5.71983 | opp_overlap 2332636 TTAGATAATAAAAAA CCTTCGC GATT GCGAAGG TTTTTTTGTGGTTAG TERM 2260 2332653 - 2332636 - T 100 -11.3 -5.60689 | opp_overlap 2332636 TTAGATAATAAAAAA CCTTCGC GATT GCGAAGG TTTTTTTGTGGTTAG Shew_2019 2332784 - 2332665 - | hypothetical protein Shew_2020 2334095 - 2332809 - | seryl-tRNA synthetase TERM 2261 2333732 - 2333742 + g 71 -6.8 -4.25104 | overlap 2333722 2333719 CCCAGCGGCGGATCT CGAC GTT GTCG TTTTCGTCCGCACCA Shew_2021 2334489 - 2334115 - | CrcB protein Shew_2022 2335813 - 2334482 - | recombination factor protein RarA TERM 2262 2335018 - 2335003 - G 83 -11.8 -3.84648 | opp_overlap 2335005 GGCAATACCAGTAAA GCGCCG CATC CGGCGC CGAGCCCCGAATCGA Shew_2023 2336498 - 2335872 - | outer membrane lipoprotein carrier protein LolA Shew_2024 2339181 - 2336656 - | cell divisionFtsK/SpoIIIE TERM 2263 2339341 - 2339325 - R 100 -9.4 -5.78622 | opp_overlap 2339325 CGAGGTGAAAAAAAA GGAGCC TTTAT GGCTCC TTTTTTACGACATAA TERM 2264 2339325 - 2339341 + r 93 -9.4 -5.02074 | opp_overlap 2339325 CGAGGTGAAAAAAAA GGAGCC TTTAT GGCTCC TTTTTTACGACATAA Shew_2025 2339867 - 2339364 - | leucine-responsive transcriptional regulator TERM 2265 2340007 - 2340021 + H 73 -2.8 -5.16151 | opp_overlap 2340007 2340011 AAAATAACAATTCAA CCCA GAATAAA TGGG TTTTTATTCAATTTG TERM 2266 2340093 - 2340079 - g 81 -4.2 -5.13137 | opp_overlap 2340080, overlap 2340080 TAAAGAAATCAAAAA CCACGA ATA TCGTGT TGGTATGGTGCCGTC TERM 2267 2340436 - 2340402 - g 71 -9.2 -3.73224 | opp_overlap 2340408, overlap 2340408 2340409 2340412 GTATCGCTTATGAAA CAGTAACCGATGCCCG TGG CGGCCTTCCGCTACTG GCGCCAATGTCTGAA Shew_2026 2340047 - 2341162 + | alanine dehydrogenase Shew_2027 2341219 - 2341938 + | NAD(P) transhydrogenase subunit alpha TERM 2268 2341977 - 2341961 - f 100 -13.7 -4.4572 | opp_overlap 2341961 AAGAGTGTAAACAAA GGGAGCC AAT GGCTCCC TTTTTCGATTAGAAC TERM 2269 2341961 - 2341977 + F 100 -13.7 -4.74103 | opp_overlap 2341961 AAGAGTGTAAACAAA GGGAGCC AAT GGCTCCC TTTTTCGATTAGAAC Shew_2028 2342070 - 2343020 + | thioredoxin reductase TERM 2270 2343041 - 2343057 + T 100 -9.4 -5.88197 | opp_overlap 2343041 ACACTTAATAAGAAA GCAGGC CGAGT GCCTGC TTTTTTTGTCTTTAG TERM 2271 2343057 - 2343041 - T 89 -9.4 -4.47456 | opp_overlap 2343041 ACACTTAATAAGAAA GCAGGC CGAGT GCCTGC TTTTTTTGTCTTTAG TERM 2272 2343184 - 2343168 - T 74 -3.7 -4.93365 | opp_overlap 2343177, overlap 2343169 TTCTACAATCAAAAA TGATAAC ACC GTTATCG GACGTTTTAACAAGC TERM 2273 2343274 - 2343289 + T 77 -10.4 -3.53091 | opp_overlap 2343274 TCGGGCACAAAAAAA GGGACC CTGG GGTCCC TTTCAAAGCAAAGCT TERM 2274 2343289 - 2343274 - T 100 -10.4 -5.60993 | opp_overlap 2343274 TCGGGCACAAAAAAA GGGACC CTGG GGTCCC TTTCAAAGCAAAGCT rplT 2343670 - 2343311 - | 50S ribosomal protein L20 rpmI 2343883 - 2343689 - | 50S ribosomal protein L35 TERM 2275 2343924 - 2343954 + r 79 -7.7 -4.37198 | opp_overlap 2343931, overlap 2343924 2343926 AATAAAACGCAAGGC G-AGCAGAGGCCCTC AGA GAGG-TCTCTGCTAC TTTTAAATTTGCCTT TERM 2276 2343926 - 2343951 + r 74 -10.5 -3.16093 | gap 1, opp_overlap 2343931, overlap 2343924 2343924 TAAAACGCAAGGCGA GCAGAGGCCCTC AGA GAGG-TCTCTGC TACTTTTAAATTTGC Shew_2031 2344492 - 2343971 - | translation initiation factor IF-3 TERM 2277 2344204 - 2344216 + g 74 -3.3 -4.99947 | AGTCGTTTTCGTCAG TACCG GGA CGGAA TTTTATTTCCTTCAC Shew_2032 2346445 - 2344517 - | threonyl-tRNA synthetase TERM 2278 2346648 - 2346623 - H 91 -11.3 -4.07568 | gap 1 CGCTTCGCCTTAAAA TAGCCG-CTAGT CTG ACTAGTCGGCTA CAACTCGTTAAATCT Shew_2033 2346761 - 2347036 + | hypothetical protein Shew_2034 2347187 - 2347933 + | short-chain dehydrogenase/reductase SDR Shew_2035 2347930 - 2348130 + | hypothetical protein Shew_2036 2348950 - 2348339 - | riboflavin synthase subunit alpha TERM 2279 2348829 - 2348846 + g 70 -5.6 -4.42639 | CCGTTATTGGCGACA CTTGCA CCTCGC TGCAAG TTTTCCTTCAGGTGT Shew_2037 2348979 - 2350364 + | MATE efflux family protein TERM 2280 2350373 - 2350422 + T 81 -9.4 -4.03978 | opp_overlap 2350352 2350371 2350369 2350379, overlap 2350376 CCTATAGCCAAGATC GACACAGGCAAGCTGATGTTTA GCTAAA TAATCATCATCTTGCCTGAATC TTTATGTAAACACTT TERM 2281 2350416 - 2350379 - T 72 -10 -2.9518 | opp_overlap 2350376 2350373, overlap 2350371 2350369 GCCAAGATCGACACA GGCAAGCTGATGTTTA GCTAAA TAATCATCATCTTGCC TGAATCTTTATGTAA TERM 2282 2350786 - 2350799 + T 100 -8.1 -5.65177 | opp_overlap 2350783 2350785 TTGTAAAAATATCAG CCAGC GTAA GCTGG TTTTTTTATGCCTGT Shew_2038 2351273 - 2350830 - | hypothetical protein Shew_2039 2351567 - 2354269 + | GCN5-related N-acetyltransferase TERM 2283 2354374 - 2354397 + T 93 -12.5 -3.55801 | opp_overlap 2354374 ACCCACTTACAGAAA GGCTAGCTC ACAACA GAGCTAGCC TTTGAAACAGTTACT TERM 2284 2354397 - 2354374 - T 100 -12.5 -4.06678 | opp_overlap 2354374 ACCCACTTACAGAAA GGCTAGCTC ACAACA GAGCTAGCC TTTGAAACAGTTACT Shew_2040 2355467 - 2354424 - | diguanylate cyclase Shew_2041 2357230 - 2355602 - | hypothetical protein TERM 2285 2355720 - 2355708 - G 71 -9.1 -3.86346 | TTATCGTGTGAGAAA CCACC TTT GGTGG CATGGTCACGCAGGC TERM 2286 2357031 - 2357009 - G 72 -3.5 -4.7871 | gap 1 AACGATGATGAAAAA CGGCTTAAGC AGAT ACTTAA-CCG AAAAAAGCGAGAAGA TERM 2287 2357207 - 2357177 - G 70 -5.5 -4.38141 | gap 1, overlap 2357178 2357179 GCCTACATAAAATAA CGCGGTG-ATCAGT GTAA ACTGATTCACCGAA AGGGTTTTAACGCGT TERM 2288 2357752 - 2357731 - R 74 -10.1 -3.24032 | overlap 2357729 AGTTTTGAATTAACA CTCGGGAGT TTAC ACACCCGAG GTGAAAAAAAAGTGT Shew_2042 2358210 - 2357797 - | MarR family transcriptional regulator Shew_2043 2359341 - 2358253 - | cation diffusion facilitator family transporter Shew_2044 2359742 - 2360299 + | ecotin precursor TERM 2289 2360375 - 2360342 - T 81 -11.9 -3.0281 | opp_overlap 2360344 2360350, overlap 2360350 CATATTAATCAGATA CAAAAAAACCTCTGC CTAG GCAGAGGTTTTTATA TTGCTATCTGTATTT TERM 2290 2360344 - 2360373 + T 86 -12.3 -3.24637 | opp_overlap 2360342 2360350, overlap 2360350 TATTAATCAGATACA AAAAAACCTCTGC CTAG GCAGAGGTTTTTA TATTGCTATCTGTAT TERM 2291 2360367 - 2360350 - T 100 -11.3 -5.76633 | opp_overlap 2360344 2360350, overlap 2360342 TCAGATACAAAAAAA CCTCTGC CTAG GCAGAGG TTTTTATATTGCTAT TERM 2292 2360350 - 2360367 + T 100 -11.3 -5.13344 | opp_overlap 2360350 2360342, overlap 2360344 TCAGATACAAAAAAA CCTCTGC CTAG GCAGAGG TTTTTATATTGCTAT Shew_2045 2361043 - 2360402 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase Shew_2046 2362891 - 2361065 - | phosphogluconate dehydratase TERM 2293 2361718 - 2361692 - G 72 -10.2 -3.40597 | opp_overlap 2361692, overlap 2361690 CTCTTTATCCAAAGA TTCGTTTGGGCC TTC GACCCAAACCAA TTCATTGTCGATAAG Shew_2047 2363599 - 2362901 - | 6-phosphogluconolactonase TERM 2294 2363308 - 2363318 + g 73 -8.2 -4.08216 | overlap 2363303 CGCGAAACTTGGCGC CCGC GGC GCGG TTTTGCAGCAGGTGC Shew_2048 2365084 - 2363612 - | glucose-6-phosphate 1-dehydrogenase TERM 2295 2363676 - 2363649 - G 83 -12 -3.76224 | opp_overlap 2363674 TCTTTAGCGATCAAA GCAACTGAGGCC ACAG GGCCCCAGCTAC CGGCTGGGTATGGCT Shew_2049 2365393 - 2366247 + | DNA-binding transcriptional regulator HexR TERM 2296 2366269 - 2366293 + F 100 -15 -5.91981 | opp_overlap 2366266 2366269 TTTGTAAGGATATTA GGCGGCCCTT GTATA AGGGGCCGCC TTTTTTTTCACTTTT TERM 2297 2366293 - 2366269 - f 82 -12.8 -2.69964 | opp_overlap 2366269, overlap 2366266 TTTGTAAGGATATTA GGCGGCCCTT GTATA AGGGGCCGCC TTTTTTTTCACTTTT Shew_2050 2366431 - 2367870 + | pyruvate kinase TERM 2298 2367951 - 2367923 - T 100 -13.3 -4.09739 | opp_overlap 2367929, overlap 2367929 TGAACCGCCTTAAAA GAAAAAGGTACGC AAT GCGTACCTTTTTT ATGCCAGACCTAGAT TERM 2299 2367929 - 2367945 + T 100 -12.3 -5.24129 | opp_overlap 2367923 2367929 GCCTTAAAAGAAAAA GGTACGC AAT GCGTACC TTTTTTATGCCAGAC TERM 2300 2367945 - 2367929 - T 100 -12.3 -5.45802 | opp_overlap 2367929, overlap 2367923 GCCTTAAAAGAAAAA GGTACGC AAT GCGTACC TTTTTTATGCCAGAC Shew_2051 2370287 - 2368011 - | acyl-CoA dehydrogenase TERM 2301 2370269 - 2370248 - G 71 -4.5 -4.62069 | gap 1 TTTTCACGCCAAAAA GCACTA-TGA TGA CCAATAGTGC CAGGATAAAGAGTGT Shew_2052 2370934 - 2370296 - | TetR family transcriptional regulator TERM 2302 2370683 - 2370703 + g 91 -11.2 -4.4078 | opp_overlap 2370665 CGAGAAGATCTCATT CAGGCTAG GTTCG CTAGCCTG TTTTAATTGCACCAC TERM 2303 2370877 - 2370866 - G 71 -7.2 -4.08216 | overlap 2370867 GGAGGTTTCTGAAAA GCCG CGCT CGGC GAATAGCTTTTCTGC TERM 2304 2371295 - 2371277 - g 71 -7.3 -4.14397 | ACTGCAGAAAGCAAA GCCCAGC AGGCA GCAGGGC AAGATGGTCTAAAAC Shew_2053 2371154 - 2373058 + | peptidyl-dipeptidase A TERM 2305 2373146 - 2373129 - T 100 -9.9 -5.73978 | opp_overlap 2373129 AGTAGAAACAAAAAA TCACCTC CTCG GAGGTGA TTTTTTTTAAACTAA TERM 2306 2373129 - 2373146 + T 100 -9.9 -5.78622 | opp_overlap 2373129 AGTAGAAACAAAAAA TCACCTC CTCG GAGGTGA TTTTTTTTAAACTAA Shew_2054 2373803 - 2373213 - | Smr protein/MutS2 TERM 2307 2373929 - 2373911 - H 70 -7.4 -3.95424 | AGTATTAATAGCAAA TCGGCAAG TCA CTTGCGGA GTCAAACACTCAGCC TERM 2308 2374689 - 2374662 - g 84 -9.8 -4.41616 | opp_overlap 2374662 ATCCGCCTAAAGAAA CCGAAGAACCCG TGAG CGAGTTCGCCGG TAAGTTTGTCACCGT Shew_2055 2374292 - 2374858 + | hypothetical protein Shew_2056 2374851 - 2375330 + | SecC motif-containing protein Shew_2057 2377643 - 2375454 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TERM 2309 2377697 - 2377679 - R 71 -2.4 -5.06414 | overlap 2377696 CTTTGCCAATAAAAA GGTTATCA AGG TAAAAACC GCCAAAGACGGTACA TERM 2310 2377708 - 2377696 - R 80 -6.9 -4.7629 | overlap 2377679 TTATCAAGGTAAAAA CCGCC AAA GACGG TACAACATAGATGTT Shew_2058 2378090 - 2377803 - | hypothetical protein Shew_2059 2378651 - 2378163 - | hypothetical protein TERM 2311 2379308 - 2379290 - H 71 -8.8 -3.47227 | opp_overlap 2379293 2379300, overlap 2379293 CTTCAATCATCACAA CAAGCGCC CTC GACGCTCG GTCGCATTTCTTTTC TERM 2312 2380127 - 2380141 + G 74 -7 -4.37092 | overlap 2380113 2380129 AGGCATAGGCCGTCC GCGGGC AGA GCCCTC TTTTATCCCAGGGGT Shew_2060 2379396 - 2380457 + | pyridoxal-5'-phosphate-dependent enzyme, beta subunit TERM 2313 2380555 - 2380566 + T 95 -3.6 -5.72616 | TTAACTGTTTACTCC CGGT TGGC GCCG TTTTTTTATGTGAAT Shew_2061 2381267 - 2380599 - | radical SAM domain-containing protein Shew_2062 2381452 - 2382135 + | exsB protein TERM 2314 2382656 - 2382674 + G 86 -7.4 -4.85129 | GCATCTAGTAGGCGT GATCAGCG GCG TGCTGGTC TTTTTGCTCTATCGT Shew_2063 2382129 - 2382713 + | rhomboid family protein TERM 2315 2382786 - 2382813 + T 93 -11.4 -4.21631 | opp_overlap 2382791, overlap 2382791 TGGCTCTGAAAAGAT AAAAAGGCTCAC CTAG GTGAGCCTTTTC TTTGTTGCATCGCTT TERM 2316 2382791 - 2382808 + T 100 -11.3 -5.10665 | opp_overlap 2382791, overlap 2382786 CTGAAAAGATAAAAA GGCTCAC CTAG GTGAGCC TTTTCTTTGTTGCAT TERM 2317 2382808 - 2382791 - T 100 -11.3 -5.28983 | opp_overlap 2382786 2382791 CTGAAAAGATAAAAA GGCTCAC CTAG GTGAGCC TTTTCTTTGTTGCAT Shew_2064 2384858 - 2382840 - | excinuclease ABC subunit B TERM 2318 2384796 - 2384823 + g 70 -11.3 -3.01712 | gap 1 GACAAGTTGCTTGAT TGCCCCAGGCTG ATCGC CAGCC-GGGGCG TATTGCGAAACGAGA TERM 2319 2385048 - 2385029 - H 74 -3.6 -5.03314 | gap 1 TTCATGGTCAAAAAA CAGGC-TAA AAC TCACGCCTG TAGCCAATTTAATAC TERM 2320 2387961 - 2387971 + G 71 -6.8 -4.19817 | AGCTTTTAGTGGACG GCCT GCA AGGC TTTTACATCGCTAAG Shew_2065 2386115 - 2388043 + | diguanylate cyclase/phosphodiesterase Shew_2066 2388127 - 2388705 + | Na(+)-translocating NADH-quinone reductase subunit E Shew_2067 2388708 - 2389277 + | electron transport complex, RnfABCDGE type, B subunit TERM 2321 2390459 - 2390479 + G 77 -11.9 -3.32844 | overlap 2390428 CAGGCCTGTCCGGCG CAGTTGCTG CCC CAGCAGCTG TTCTGGCATGCCAAG Shew_2068 2389271 - 2391883 + | electron transport complex protein RnfC TERM 2322 2391976 - 2391996 + G 70 -3.1 -4.74103 | overlap 2391979 CTGTGCGCCCTGCCC GGCGCGCTG GCC CAGTGCTAC TTTTTCGGTTGGGGA TERM 2323 2392325 - 2392304 - g 70 -12.3 -2.64616 | TCCCGATGCAGATGA CCACCTGGG TCGC CCCAAGTGG CGCCGCCCTGCATGA Shew_2069 2391886 - 2392938 + | electron transport complex, RnfABCDGE type, D subunit Shew_2070 2392959 - 2393597 + | electron transport complex protein RnfG Shew_2071 2393590 - 2394288 + | SoxR-reducing system protein RsxE Shew_2072 2394292 - 2394933 + | endonuclease III TERM 2324 2395044 - 2395015 - f 100 -13.7 -3.59649 | opp_overlap 2395023, overlap 2395016 2395023 AAATAAGCTCTCAAA GGAAAAAAGCCGC AGAT GCGGCTTTTTTCA GGCTCAGTAGCGAGG TERM 2325 2395043 - 2395016 - f 100 -17.2 -2.75066 | opp_overlap 2395023, overlap 2395015 2395023 AATAAGCTCTCAAAG GAAAAAAGCCGC AGAT GCGGCTTTTTTC AGGCTCAGTAGCGAG TERM 2326 2395036 - 2395023 - f 100 -9.5 -5.37593 | opp_overlap 2395023, overlap 2395016 2395015 TCTCAAAGGAAAAAA GCCGC AGAT GCGGC TTTTTTCAGGCTCAG TERM 2327 2395023 - 2395036 + F 93 -9.5 -5.03314 | opp_overlap 2395023 2395016 2395015 TCTCAAAGGAAAAAA GCCGC AGAT GCGGC TTTTTTCAGGCTCAG Shew_2073 2395525 - 2395935 + | lactoylglutathione lyase TERM 2328 2395952 - 2395979 + T 87 -11.4 -3.58522 | opp_overlap 2395959, overlap 2395959 CTTGATACTCACATA AAAAAAAGCGCC CTAG GGCGCTTTTTTA TTTCCAACTGCTCGT TERM 2329 2395972 - 2395959 - T 100 -9.5 -6.02914 | opp_overlap 2395959 2395952 CTCACATAAAAAAAA GCGCC CTAG GGCGC TTTTTTATTTCCAAC TERM 2330 2395959 - 2395972 + T 100 -9.5 -5.63517 | opp_overlap 2395959, overlap 2395952 CTCACATAAAAAAAA GCGCC CTAG GGCGC TTTTTTATTTCCAAC Shew_2074 2398504 - 2395994 - | TonB-dependent receptor TERM 2331 2399557 - 2399538 - R 100 -7.8 -5.55769 | opp_overlap 2399538 GGTGACAACAAAAAA GCGCAGTC TTTC GACCACGC TTTTTAACGCTCAAC ruvB 2400623 - 2399610 - | Holliday junction DNA helicase B Shew_2076 2401260 - 2400643 - | Holliday junction DNA helicase RuvA Shew_2077 2401778 - 2401257 - | crossover junction endodeoxyribonuclease RuvC Shew_2078 2402532 - 2401786 - | hypothetical protein TERM 2332 2402583 - 2402565 - R 100 -14.6 -4.56597 | opp_overlap 2402565 GTTTGCCTCGAAAAA GCCGAGCA AGA TGCTCGGC TTATTGGTTCAATCT TERM 2333 2402565 - 2402583 + r 100 -14.6 -3.83006 | opp_overlap 2402565 GTTTGCCTCGAAAAA GCCGAGCA AGA TGCTCGGC TTATTGGTTCAATCT aspS 2404381 - 2402603 - | aspartyl-tRNA synthetase TERM 2334 2404307 - 2404282 - G 72 -2.5 -4.94992 | gap 1, opp_overlap 2404285 2404296, overlap 2404285 GCAAATCCAGAAAAA CCAC-GCCGC CGAGATC GCGACTGCGG TTTACCCAACCTACG Shew_2080 2407355 - 2404551 - | diguanylate cyclase TERM 2335 2406705 - 2406726 + g 71 -8.7 -3.71848 | opp_overlap 2406686, overlap 2406723 CAGCCGTCCCTTGCT GACGGCG GGCACCAG CGCCGTC TTCTTGATAAGCAAA TERM 2336 2407549 - 2407527 - H 74 -7 -4.39002 | overlap 2407529 AAAGGGCTTATAAAA GGCAGCTTAT ATT ACAAGCTGGC TACAAAAAATAACCT TERM 2337 2408102 - 2408132 + G 73 -5.5 -4.56597 | CGAGATCCAAGATGC CTCCATGGTGA TCTTAAACT TCACCATGCAG TTTTTGGCCCCGGAA TERM 2338 2408397 - 2408374 - g 77 -10.4 -3.80573 | gap 1, opp_overlap 2408373 2408374 CCCAGCATCAGCAAA GGCTTAAAGCC CAG GGCTTT-AGCC ATTTCAGCGTCTGGT Shew_2081 2407722 - 2408453 + | putative methyltransferase Shew_2082 2408450 - 2409442 + | putative methyltransferase Shew_2083 2409468 - 2410205 + | hypothetical protein Shew_2084 2410221 - 2411726 + | gonadoliberin III-related protein TERM 2339 2411884 - 2411896 + GF 70 -10.5 -2.57344 | opp_overlap 2411883, overlap 2411883 2411886 CCTGGCGAACGATAT CGCCG TGC CGGCG CTTATCGGCACCGTC Shew_2085 2411729 - 2412685 + | alpha-L-glutamate ligase-like protein TERM 2340 2412723 - 2412737 + GF 72 -10 -2.90763 | opp_overlap 2412723 GCCTCTCCTATTACA CTGCTC AGC GAGCAG TGTATCGACTATCAG TERM 2341 2412737 - 2412723 - gf 71 -10 -2.78384 | opp_overlap 2412723 GCCTCTCCTATTACA CTGCTC AGC GAGCAG TGTATCGACTATCAG TERM 2342 2412791 - 2412776 - gf 70 -10.4 -2.64616 | overlap 2412778 GTCTCAGGCACAGGA GAGCGG CACG CCGCTC GATGCCAGTGTGCGA TERM 2343 2413776 - 2413763 - gf 71 -8.1 -3.78235 | GCATAAGGAACATAA GGCTC AGTT GAGCC CCCTGAGACAAACCG Shew_2086 2412648 - 2414423 + | hypothetical protein Shew_2087 2414398 - 2415549 + | hypothetical protein TERM 2344 2416252 - 2416272 + G 71 -6.7 -4.2828 | CATGAGGCCTTGGTG GTCCTGTCC AAG GGGCTGGGC TTTTGCTGGATCCCC Shew_2088 2415565 - 2416476 + | LysR family transcriptional regulator Shew_2089 2417850 - 2416453 - | SrpA-related protein TERM 2345 2416577 - 2416553 - G 71 -12.1 -2.88134 | opp_overlap 2416548, overlap 2416545 2416550 2416548 CTAAACAGAAGACCA TCGGCCGCCAG AAG CTGGCGACTGA TCCGCTCTATCGATT TERM 2346 2417821 - 2417792 - G 79 -10.7 -3.8917 | overlap 2417794 GTTGAAGCAGAAGAA GACGGCAATGCAC CGAG GCGCATCGCCGTT AAGGGGGGCGTAGTC TERM 2347 2417819 - 2417794 - G 82 -13.3 -3.52995 | overlap 2417792 TGAAGCAGAAGAAGA CGGCAATGCAC CGAG GCGCATCGCCG TTAAGGGGGGCGTAG Shew_2090 2418123 - 2417854 - | methyl-accepting chemotaxis protein thiH 2419344 - 2418226 - | thiamine biosynthesis protein ThiH Shew_2092 2420122 - 2419349 - | thiazole biosynthesis family protein Shew_2093 2420333 - 2420124 - | thiamine biosynthesis protein ThiS Shew_2094 2421174 - 2420326 - | UBA/THIF-type NAD/FAD binding protein Shew_2095 2422906 - 2421161 - | phosphomethylpyrimidine kinase TERM 2348 2421473 - 2421511 + g 71 -12.2 -2.85668 | opp_overlap 2421472, overlap 2421478 CGCCAACTCGAACAC GCCATGGCTGGAGACGCC AAG GGCGATCCCCGCCTTGGC TATCCTATCGAGATC TERM 2349 2422440 - 2422461 + g 72 -5.9 -4.40221 | overlap 2422429 2422441 TGCTTGGGCTCAGTT TTAAGCTCA GTTT TGGGCTTAG TTTTGAGTTTAGTTT TERM 2350 2422612 - 2422666 + g 74 -12.1 -3.13073 | gap 1, overlap 2422611 TCAGTGGCGCCATAT GGGTCGCCAGCCAATCGGCGACAAGA TTAA TCT-GACGCTGATTGGCAAGCAGCCC TATCTTGATCGCCCT TERM 2351 2422856 - 2422891 + g 71 -4.6 -4.56775 | overlap 2422860 AATGCCCGCACCGCC CCCGCTGTCTGAACCG GCAA TGGTCCAGACAATAGG TTTTTCAGCGGACAT Shew_2096 2424960 - 2422909 - | thiamine biosynthesis protein ThiC TERM 2352 2424013 - 2424067 + g 70 -10.2 -3.29144 | gap 1, opp_overlap 2424033, overlap 2423996 CTGCTCCGCCTGCTC GATCAG-GGTATCTCTGAAGATCTC CCAGGT GAGATCTTCGGCGATGCCATTGACC TTCTCCAGCGCCTGA Shew_2097 2426567 - 2425383 - | hypothetical protein TERM 2353 2426707 - 2426736 + H 71 -4.3 -4.64861 | opp_overlap 2426709 2426713, overlap 2426709 2426710 2426714 AACAAAACAAAATTC AACTTAGGCGTAC ACAT GTACGCTTAACTA TTTCTTTTGCACCAG TERM 2354 2426710 - 2426733 + H 72 -10.4 -2.95598 | opp_overlap 2426709 2426713, overlap 2426709 2426707 2426714 AAAACAAAATTCAAC TTAGGCGTAC ACAT GTACGCTTAA CTATTTCTTTTGCAC TERM 2355 2426714 - 2426729 + H 71 -9 -3.31416 | opp_overlap 2426713 2426709, overlap 2426710 2426709 2426707 CAAAATTCAACTTAG GCGTAC ACAT GTACGC TTAACTATTTCTTTT Shew_2098 2426803 - 2427513 + | hemolysin III family channel protein Shew_2099 2428056 - 2427487 - | DTW domain-containing protein Shew_2100 2431447 - 2428211 - | DNA polymerase III, alpha subunit Shew_2101 2433501 - 2431447 - | hypothetical protein TERM 2356 2432177 - 2432125 - G 74 -12 -3.14564 | gap 1, overlap 2432127 GGATGTCTGCACCAA TAGCGGCACCAGGGTATCGGCCTGA ATAG CCAGACTGAT-CACCGGCGCCGCCA GGATGAGGCTCTCTA TERM 2357 2432175 - 2432127 - G 74 -12.4 -3.13522 | gap 1, overlap 2432125 ATGTCTGCACCAATA GCGGCACCAGGGTATCGGCCTGA ATAG CCAGACTGAT-CACCGGCGCCGC CAGGATGAGGCTCTC Shew_2102 2434332 - 2433502 - | hypothetical protein TERM 2358 2434578 - 2434591 + r 74 -8.1 -4.02535 | opp_overlap 2434578 ACAGGCACAAAAAAA CCACC CTAG GGTGG TTTGATTGGTTATCG TERM 2359 2434591 - 2434578 - R 100 -8.1 -5.65177 | opp_overlap 2434578 ACAGGCACAAAAAAA CCACC CTAG GGTGG TTTGATTGGTTATCG def 2435125 - 2434634 - | peptide deformylase Shew_2104 2435305 - 2437026 + | major facilitator transporter Shew_2105 2437406 - 2437756 + | methylated-DNA-(protein)-cysteine S-methyltransferase Shew_2106 2437805 - 2438596 + | hypothetical protein TERM 2360 2438695 - 2438681 - T 100 -12.8 -4.93898 | opp_overlap 2438681 ACATCAGCATAAAAA GGGGCC TTA GGCCCC TTCTCTTTCTCCACA TERM 2361 2438681 - 2438695 + T 100 -12.8 -3.89695 | opp_overlap 2438681 ACATCAGCATAAAAA GGGGCC TTA GGCCCC TTCTCTTTCTCCACA TERM 2362 2438867 - 2438846 - T 74 -7.3 -4.18018 | gap 1, opp_overlap 2438846, overlap 2438849 CTTCTTGAGTTAAAA CTAGCTCGCC CCG GGCGAAC-AG TTTCCACTCTCCGGG TERM 2363 2438865 - 2438849 - T 73 -10.1 -3.11208 | opp_overlap 2438846, overlap 2438846 CTTGAGTTAAAACTA GCTCGCC CCG GGCGAAC AGTTTCCACTCTCCG Shew_2107 2439611 - 2438826 - | glutamine amidotransferase, class-II TERM 2364 2441034 - 2441017 - g 74 -6.9 -4.4078 | opp_overlap 2441019, overlap 2441001 CCGGCGGAATCAAAA CCGCGGC GGTG GCCACAG GCGCCTACGCCCGCA fadE 2439852 - 2442299 + | acyl-CoA dehydrogenase TERM 2365 2442323 - 2442352 + T 82 -12.3 -2.79183 | opp_overlap 2442330, overlap 2442330 CAATAACTGATCCGT AAAAAAAGGAGGC AATC GCCTCCTTTTTTA TCTCCTAAAACTGCC TERM 2366 2442345 - 2442330 - T 100 -10.4 -5.42259 | opp_overlap 2442323 2442330 TGATCCGTAAAAAAA GGAGGC AATC GCCTCC TTTTTTATCTCCTAA TERM 2367 2442330 - 2442345 + T 100 -10.4 -5.39721 | opp_overlap 2442330, overlap 2442323 TGATCCGTAAAAAAA GGAGGC AATC GCCTCC TTTTTTATCTCCTAA Shew_2109 2444337 - 2442406 - | sodium/hydrogen exchanger TERM 2368 2444719 - 2444740 + r 74 -10.1 -3.24423 | opp_overlap 2444719, overlap 2444712 AACAGATACAAAAAA GCCCCGTCA TTGC TGACGAGGC TTAAATGTTGTTGGC TERM 2369 2444740 - 2444719 - R 100 -12.3 -5.46276 | opp_overlap 2444712 2444719 AACAGATACAAAAAA GCCCCGTCA TTGC TGACGAGGC TTAAATGTTGTTGGC TERM 2370 2444930 - 2444891 - R 100 -18.8 -3.71991 | opp_overlap 2444900, overlap 2444900 TCAAAGAAAAACAGA TACAAAAAAGCCCCGTCA TTGC TGACGGGGCTTCTATGTA GTTGGCGGAGCAAAC TERM 2371 2444921 - 2444900 - R 100 -15.9 -5.46276 | opp_overlap 2444900, overlap 2444891 AACAGATACAAAAAA GCCCCGTCA TTGC TGACGGGGC TTCTATGTAGTTGGC TERM 2372 2444900 - 2444921 + r 100 -15.9 -3.646 | opp_overlap 2444900 2444891 AACAGATACAAAAAA GCCCCGTCA TTGC TGACGGGGC TTCTATGTAGTTGGC TERM 2373 2445102 - 2445081 - R 100 -12.3 -5.46276 | opp_overlap 2445081 AACAGATACAAAAAA GCCCCGTCA TTGC TGACGAGGC TTCGATGTAGTTGGC TERM 2374 2445081 - 2445102 + r 74 -10.1 -3.16267 | opp_overlap 2445081 AACAGATACAAAAAA GCCCCGTCA TTGC TGACGAGGC TTCGATGTAGTTGGC TERM 2375 2445263 - 2445284 + r 74 -10.1 -3.16267 | opp_overlap 2445263 AACAGATACAAAAAA GCCCCGTCA TTAC TGACGAGGC TTCGATGTAGTTGGC TERM 2376 2445284 - 2445263 - R 100 -12.3 -5.46276 | opp_overlap 2445263 AACAGATACAAAAAA GCCCCGTCA TTAC TGACGAGGC TTCGATGTAGTTGGC Shew_2110 2446938 - 2445616 - | hypothetical protein Shew_2111 2447677 - 2446949 - | DNA polymerase III, epsilon subunit Shew_2112 2447746 - 2448222 + | ribonuclease H Shew_2113 2448989 - 2448267 - | hypothetical protein TERM 2377 2448558 - 2448570 + g 79 -9.1 -4.2558 | GGTAAAGAAACGGCC GCTCC AGG GGAGC TTTTCCTGACGACTG Shew_2114 2449127 - 2449909 + | hydroxyacylglutathione hydrolase Shew_2115 2450005 - 2451540 + | lytic transglycosylase, catalytic TERM 2378 2451675 - 2451718 + T 82 -10.4 -3.86307 | opp_overlap 2451679 2451688, overlap 2451688 TTAAGCAGCAATTAC CACACACAAAAAAGCGATGC CTCG GCGTCGCTTTTTTATTAGTG CTTTTTTGTTAGCGC TERM 2379 2451688 - 2451705 + T 100 -9.1 -5.52023 | opp_overlap 2451679 2451688, overlap 2451675 ACCACACACAAAAAA GCGATGC CTCG GCGTCGC TTTTTTATTAGTGCT TERM 2380 2451705 - 2451688 - T 91 -6.9 -5.43414 | opp_overlap 2451688 2451675, overlap 2451679 ACCACACACAAAAAA GCGATGC CTCG GCGTCGC TTTTTTATTAGTGCT Shew_2116 2453602 - 2451758 - | AsmA family protein Shew_2117 2454134 - 2453640 - | ribonuclease activity regulator protein RraA TERM 2381 2454552 - 2454536 - g 75 -10.1 -3.71848 | CTGGTCGATGAAGAA CAGGCCA ATC TGGCCCG CCAGGAAAACATTCA Shew_2118 2454344 - 2454658 + | hypothetical protein TERM 2382 2454665 - 2454686 + T 80 -8.8 -4.27584 | opp_overlap 2454655 2454665 2454668 ACAAAGTAATCCAAA TAACCTGC CAGATA GCAGGTTA TTTTCCATTACAGCT TERM 2383 2454686 - 2454665 - T 79 -9.5 -3.83816 | opp_overlap 2454665, overlap 2454655 2454668 ACAAAGTAATCCAAA TAACCTGCC AGAT AGCAGGTTA TTTTCCATTACAGCT TERM 2384 2454683 - 2454668 - T 70 -6.8 -4.02653 | opp_overlap 2454665, overlap 2454665 2454655 AAGTAATCCAAATAA CCTGCC AGAT AGCAGG TTATTTTCCATTACA Shew_2119 2456340 - 2454694 - | methyl-accepting chemotaxis sensory transducer Shew_2120 2456566 - 2457546 + | hypothetical protein Shew_2121 2457561 - 2458919 + | diguanylate cyclase Shew_2122 2459533 - 2458916 - | putative sulfite oxidase subunit YedZ Shew_2123 2460582 - 2459572 - | putative sulfite oxidase subunit YedY Shew_2124 2460779 - 2462254 + | hypothetical protein TERM 2385 2462714 - 2462691 - g 72 -2.4 -4.8622 | gap 1, overlap 2462694 GCCGGTAAGCAAAAA CATTGGCAGGA TTT TCTCGCCA-TG AGCCCTGAACTGCCC TERM 2386 2463692 - 2463675 - g 72 -6.3 -4.4458 | gap 1 CATACACAGAACAAA CAGGCGCA GTA TGC-CCTG CTGGCCCAACGCAAC Shew_2125 2462346 - 2464283 + | lytic transglycosylase, catalytic Shew_2126 2464627 - 2465538 + | ATPase TERM 2387 2466021 - 2466009 - g 71 -9.1 -3.71848 | overlap 2466012 CCCCCTGAGCAACAA CCAGC GAG GCTGG ATCGCTCCCGGCCGC TERM 2388 2466482 - 2466452 - g 76 -3.8 -4.87133 | AGCTTCCAAACAAAA CCTTAGCGCCCGCC AGC GGCGAGCAACACAG ACGTTTAGTGCTCGC Shew_2127 2465557 - 2466561 + | hypothetical protein TERM 2389 2466939 - 2466929 - g 76 -5.4 -4.74504 | opp_overlap 2466929 ACCCTAATCGAAAAA CAGA GCC TCTG GTTTACCCTGCAACT Shew_2128 2466551 - 2468593 + | transglutaminase domain-containing protein TERM 2390 2468982 - 2469014 + G 71 -4.6 -4.52857 | opp_overlap 2468980, overlap 2468984 CAAGCAAAATCAGGT CGCGGCGGCGCTGG AGTTC CCCCTGCCGTCGAG TTTTATCTGGCAACT Shew_2129 2468812 - 2472390 + | exodeoxyribonuclease V, gamma subunit TERM 2391 2475705 - 2475688 - g 83 -9.8 -4.3129 | GAGTCACTATGAAAA GCCCGC CATGCT GCGGGC CATCGCAGGTCACCA Shew_2130 2472392 - 2476063 + | exodeoxyribonuclease V, beta subunit Shew_2131 2476060 - 2478048 + | exodeoxyribonuclease V, alpha subunit Shew_2132 2478045 - 2478968 + | hypothetical protein ddl 2479110 - 2480114 + | D-alanyl-alanine synthetase A TERM 2392 2480139 - 2480168 + T 100 -16.7 -3.12378 | opp_overlap 2480146, overlap 2480146 GTGAACGTTAGCCAT TAAAAAAGGGAGC CTAG GCTCCCTTTTTTA TTCGATGCTGTGCTT TERM 2393 2480146 - 2480161 + T 100 -10.4 -5.4833 | opp_overlap 2480146, overlap 2480139 TTAGCCATTAAAAAA GGGAGC CTAG GCTCCC TTTTTTATTCGATGC TERM 2394 2480161 - 2480146 - T 93 -10.4 -5.1675 | opp_overlap 2480139 2480146 TTAGCCATTAAAAAA GGGAGC CTAG GCTCCC TTTTTTATTCGATGC Shew_2134 2480646 - 2480209 - | heat shock protein Hsp20 TERM 2395 2480817 - 2480798 - R 71 -10 -2.73875 | gap 1, overlap 2480795 TCTTGGGTAACATCA GGGGC-CTC GAT GAGCGCCCC ATAATCACTATATGT TERM 2396 2481007 - 2481026 + r 80 -9.2 -4.09509 | opp_overlap 2481008, overlap 2481008 TCTTGGACATAAAAA AGGCAGCC CTGA GGCTGCCC TTTGTGTCGCTTAAT TERM 2397 2481008 - 2481025 + r 83 -12.7 -3.04983 | opp_overlap 2481008, overlap 2481007 CTTGGACATAAAAAA GGCAGCC CTGA GGCTGCC CTTTGTGTCGCTTAA TERM 2398 2481025 - 2481008 - R 100 -12.7 -5.36441 | opp_overlap 2481007 2481008 CTTGGACATAAAAAA GGCAGCC CTGA GGCTGCC CTTTGTGTCGCTTAA ushA 2482750 - 2481047 - | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 2399 2482909 - 2482899 - R 70 -6.8 -4.13945 | opp_overlap 2482898 2482893 2482899 ATGTTTATTTTAAAA GCGT TTT ACGC CTTTCATTGTTTCAT TERM 2400 2483294 - 2483275 - R 100 -12.8 -5.37345 | opp_overlap 2483272 2483268 2483275 TGCAAGCATAAAAAA GAGGCGCC AACT GGCGCCCC TCGCTTATTTTAATA TERM 2401 2483275 - 2483294 + r 74 -10.6 -2.76936 | opp_overlap 2483275, overlap 2483272 2483268 TGCAAGCATAAAAAA GAGGCGCC AACT GGCGCCCC TCGCTTATTTTAATA Shew_2136 2484029 - 2483355 - | carboxylesterase TERM 2402 2484132 - 2484167 + H 85 -10.6 -3.76379 | opp_overlap 2484121 2484131 2484130 2484143, overlap 2484143 ACTATTCGATAAAGT CGAATAAAAAACGCCA GTTT TCGCGTTTTTTATCCG TTTAGTCGACTGTTA TERM 2403 2484156 - 2484143 - H 81 -2.3 -5.4756 | opp_overlap 2484132 2484143, overlap 2484131 2484130 AAGTCGAATAAAAAA CGCCA GTTT TCGCG TTTTTTATCCGTTTA TERM 2404 2484143 - 2484156 + H 77 -2.3 -5.33866 | opp_overlap 2484143 2484131 2484130, overlap 2484132 AAGTCGAATAAAAAA CGCCA GTTT TCGCG TTTTTTATCCGTTTA Shew_2137 2484221 - 2485240 + | glutathione S-transferase domain-containing protein Shew_2138 2485509 - 2485285 - | hypothetical protein TERM 2405 2485556 - 2485537 - R 77 -9.2 -3.74077 | opp_overlap 2485535 2485537 CGTTAGATATGCAAA GACCCAGG AACA CCCGGGCC TCTATGGTTTTCGCT Shew_2139 2486089 - 2485607 - | peptidylprolyl isomerase, FKBP-type Shew_2140 2487036 - 2486164 - | hypothetical protein TERM 2406 2487266 - 2487244 - R 100 -15.6 -4.24342 | opp_overlap 2487241 GCTGTCATTAACAAA TGGCCGAGCA AAT TGCCCGGCCA AAATCTTAAGCTAAT Shew_2141 2488505 - 2487318 - | lytic murein transglycosylase TERM 2407 2487382 - 2487361 - G 71 -7.9 -4.08216 | overlap 2487362 TCATCGCTTGGAAAA CCGTCGGCC ACCA GGCCAACGC TGCGCTGAAAGGCCT TERM 2408 2487381 - 2487362 - G 70 -11.4 -3.04715 | overlap 2487361 CATCGCTTGGAAAAC CGTCGGCC ACCA GGCCAACG CTGCGCTGAAAGGCC TERM 2409 2488549 - 2488539 - H 83 -4 -5.4477 | AAACGGCTAAAAAAA TAAG AAA CTTA ATGATCTGCAGCCGG Shew_2142 2488761 - 2489135 + | hypothetical protein TERM 2410 2489200 - 2489175 - f 85 -13.3 -2.81547 | overlap 2489172 CGCTTATACCAAGTA GCAGACAGGGG ATAG CCCTTGTCTGC AAGCCTGCCCCTGGT Shew_2143 2489193 - 2489876 + | hypothetical protein Shew_2144 2490884 - 2489931 - | response regulator receiver modulated CheW protein Shew_2145 2492606 - 2490993 - | MscS mechanosensitive ion channel TERM 2411 2491199 - 2491220 + g 75 -9.5 -3.83026 | gap 1, overlap 2491190 2491201 GCTCTTTGAGCACCA GCTCATGCTC TTC GAGCATG-GC TTTAATCTCGGCGAC Shew_2146 2493096 - 2493269 + | hypothetical protein TERM 2412 2493414 - 2493366 - T 71 -9.8 -3.10164 | opp_overlap 2493363, overlap 2493368 CGACTCAGCAGGTAA CATTTGGCTCAGGT-TGTACCCCT TTC ACAGGTACCGACCTG-GCCAAATG GCATTTATCTCTCTA Shew_2147 2494345 - 2493419 - | hypothetical protein Shew_2148 2494575 - 2494982 + | hypothetical protein Shew_2149 2495929 - 2495069 - | ABC transporter TERM 2413 2496138 - 2496152 + G 71 -11.4 -3.21416 | overlap 2496118 GCGCTGGTGATCTTG CCAGGC CCG GCCTGG TTACTGCTGCCCATA Shew_2150 2496066 - 2496293 + | integral membrane protein TerC TERM 2414 2496419 - 2496409 - T 74 -3.2 -5.13741 | GCAAGCCAACAAAAA GCTA GGT CAGC ACAAAGAGGTCGCGC Shew_2151 2496787 - 2496410 - | hypothetical protein Shew_2152 2497142 - 2497486 + | hypothetical protein TERM 2415 2497567 - 2497550 - T 91 -8.4 -5.09895 | opp_overlap 2497550, overlap 2497533 TAGCCATTTAAAAAA GCGAGC TCAACG GCTCGC TTTTTAGATCTAAAA TERM 2416 2497550 - 2497567 + T 90 -9.1 -4.70659 | opp_overlap 2497533 2497550 TAGCCATTTAAAAAA GCGAGCT CAAC GGCTCGC TTTTTAGATCTAAAA Shew_2153 2498497 - 2497592 - | LysR family transcriptional regulator Shew_2154 2498652 - 2499812 + | homogentisate 1,2-dioxygenase TERM 2417 2500065 - 2500036 - g 82 -5.9 -4.95876 | gap 1 AAGCATAAGCAAAAA GATATCGTT-TACT ACA AGCAAAACGACATC AACTTCCTGCTAAAC Shew_2155 2499904 - 2500944 + | 4-hydroxyphenylpyruvate dioxygenase TERM 2418 2500980 - 2500996 + F 100 -9.4 -6.28631 | opp_overlap 2500980 ATGTGACACTAAAAA CCAGCC TCATC GGCTGG TTTTTTTTTGCTTTG TERM 2419 2500996 - 2500980 - f 91 -9.4 -4.80882 | opp_overlap 2500980 ATGTGACACTAAAAA CCAGCC TCATC GGCTGG TTTTTTTTTGCTTTG Shew_2156 2501071 - 2501688 + | lysine exporter protein LysE/YggA Shew_2157 2503096 - 2501729 - | hypothetical protein TERM 2420 2502531 - 2502558 + g 71 -7.8 -4.11216 | opp_overlap 2502504 GATGCCGAGCAGGCC TTGGTGAGCA AATCCAGA TGCTCGCCAA TTTTACCGATAAGCC Shew_2158 2503215 - 2504945 + | gamma-glutamyltransferase TERM 2421 2505007 - 2504963 - T 95 -13.1 -3.41051 | opp_overlap 2504977, overlap 2504977 TCATTCGCACTAGAA TGACCCACAAAAAAGGGAAGC TAA GCTTCCCTTTTTTTTAACTCA ATATTGCTACTCAAT TERM 2422 2504977 - 2504993 + T 100 -12.3 -5.81412 | opp_overlap 2504963 2504977 ATGACCCACAAAAAA GGGAAGC TAA GCTTCCC TTTTTTTTAACTCAA TERM 2423 2504993 - 2504977 - T 100 -12.3 -5.28778 | opp_overlap 2504977, overlap 2504963 ATGACCCACAAAAAA GGGAAGC TAA GCTTCCC TTTTTTTTAACTCAA Shew_2159 2506600 - 2505029 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Shew_2160 2508457 - 2506721 - | hypothetical protein TERM 2424 2507640 - 2507628 - G 70 -3.3 -4.84359 | GCACCGCCAGAAAAA CCATC TAG GCTGG CCGACGCGCTAGAGG TERM 2425 2507993 - 2507970 - G 81 -3.1 -5.30155 | gap 1 CGACCAATCAAAAAA CCTGG-CTGT GACTG ACTGTCCAGG GTAAAGGGGTCTTGC TERM 2426 2510813 - 2510768 - g 70 -10.5 -3.23274 | gap 1, overlap 2510763 TCTTCGACAAGGCAA CCGCCGACGCCTTCAGA-AACA ACG TGCTGTCTCAAGGCGGCAGCGA AGATCCTATGCTGCT Shew_2161 2508721 - 2510901 + | peptidyl-dipeptidase Dcp TERM 2427 2510926 - 2510941 + F 100 -10.4 -5.626 | opp_overlap 2510926 GTCAATCGACAAGAA GCACGC TCCG GCGTGC TTTTTTTATCCCGTC TERM 2428 2510941 - 2510926 - f 80 -10.4 -3.84808 | opp_overlap 2510926 GTCAATCGACAAGAA GCACGC TCCG GCGTGC TTTTTTTATCCCGTC cpdB 2511207 - 2513291 + | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 2429 2513342 - 2513329 - f 86 -9.5 -4.323 | opp_overlap 2513329, overlap 2513306 GCTAAATAGCCAAAA GCGCC TGCG GGCGC TTTTTTATTGGCTTG TERM 2430 2513329 - 2513342 + F 100 -9.5 -5.5074 | opp_overlap 2513306 2513329 GCTAAATAGCCAAAA GCGCC TGCG GGCGC TTTTTTATTGGCTTG Shew_2163 2513415 - 2514017 + | hypothetical protein TERM 2431 2514062 - 2514049 - T 93 -9.5 -5.1675 | opp_overlap 2514049 CTAGGCATTAAAAAA GGGCC TTAC GGCCC TTCTTGCTAGATCGA TERM 2432 2514049 - 2514062 + T 79 -9.5 -3.73647 | opp_overlap 2514049 CTAGGCATTAAAAAA GGGCC TTAC GGCCC TTCTTGCTAGATCGA Shew_2164 2515920 - 2514130 - | acyl-CoA dehydrogenase domain-containing protein TERM 2433 2516031 - 2516049 + H 72 -3.1 -4.9138 | opp_overlap 2516031 ATCTGCTCAAAAATA CAGCC CTTAAACTC GGCTG TTTTATTTCAATCGT Shew_2165 2516172 - 2517026 + | aldose 1-epimerase Shew_2166 2517223 - 2521146 + | hypothetical protein Shew_2167 2521273 - 2521473 + | hypothetical protein Shew_2168 2521495 - 2521815 + | hypothetical protein TERM 2434 2521912 - 2521944 + T 100 -20.8 -4.48299 | opp_overlap 2521916 2521919 ATGATGAGTGCCTAA CCAATAAGCGACGC CTAAT GCGTCGCTTATTGG TTTCTTTAACTCTCA TERM 2435 2521940 - 2521916 - T 100 -14.4 -3.34344 | opp_overlap 2521912, overlap 2521919 TGAGTGCCTAACCAA TAAGCGACGC CTAAT GCGTCGCTTA TTGGTTTCTTTAACT TERM 2436 2521937 - 2521919 - T 93 -11.7 -3.81146 | opp_overlap 2521912, overlap 2521916 GTGCCTAACCAATAA GCGACGC CTAAT GCGTCGC TTATTGGTTTCTTTA Shew_2169 2522944 - 2522015 - | hypothetical protein TERM 2437 2523191 - 2523208 + r 78 -8.3 -4.12902 | opp_overlap 2523191 ATTAAGCATAAAAAA GGCCACC CTAG GGCGGCC TTTTCAAGCTAATTA TERM 2438 2523208 - 2523191 - R 100 -10.5 -5.38249 | opp_overlap 2523191 ATTAAGCATAAAAAA GGCCACC CTAG GGCGGCC TTTTCAAGCTAATTA Shew_2170 2526069 - 2523232 - | endonuclease/exonuclease/phosphatase TERM 2439 2526449 - 2526418 - R 100 -12.3 -3.84394 | gap 1, opp_overlap 2526418 GAGATAGAAGCGAAA GCCAGATCCTGGGC TATAT GCCCAGG-CCCGGC TTCAAAACAAGCCAA Shew_2171 2527540 - 2526494 - | peptidase T2, asparaginase 2 Shew_2172 2527611 - 2529521 + | surface antigen (D15) TERM 2440 2530025 - 2530011 - g 73 -9.2 -4.015 | CTATTGACGAAACAA GCGAGC ATG GCCCGC TCACCCTGCCTATCG Shew_2173 2529518 - 2533417 + | hypothetical protein TERM 2441 2533459 - 2533476 + T 100 -9.1 -5.24129 | opp_overlap 2533459 GACGCCATAAAAAAA GCCGCTT CAAT GAGCGGC TTTTTTATCAAAGGG TERM 2442 2533476 - 2533459 - T 100 -8.4 -5.626 | opp_overlap 2533459 GACGCCATAAAAAAA GCCGCT TCAATG AGCGGC TTTTTTATCAAAGGG Shew_2174 2534268 - 2533507 - | fatty acid metabolism regulator TERM 2443 2533939 - 2533926 - G 82 -8.1 -4.52589 | overlap 2533928 TGCGGGCAGATAAAA GCTGC TCCA GCAGC ACAGGTTCACCGGCA nhaB 2534567 - 2536162 + | sodium/proton antiporter TERM 2444 2536228 - 2536208 - f 100 -11.2 -4.64657 | opp_overlap 2536208 GTAAAGTCTTAAAAA CGCCTCTA GCAGT TAGAGGCG TTTTTTTATAGGAGA TERM 2445 2536208 - 2536228 + F 100 -11.9 -5.60993 | opp_overlap 2536208 GTAAAGTCTTAAAAA CGCCTCTAG CAG TTAGAGGCG TTTTTTTATAGGAGA Shew_2176 2536250 - 2536765 + | disulphide bond formation protein DsbB TERM 2446 2536794 - 2536808 + T 100 -8.5 -5.64274 | opp_overlap 2536794 ATCGCTTATAAGAAA CGCCC TTAAT GGGCG TTTTTTTGTGGCTAG TERM 2447 2536808 - 2536794 - T 84 -8.5 -4.30987 | opp_overlap 2536794 ATCGCTTATAAGAAA CGCCC TTAAT GGGCG TTTTTTTGTGGCTAG Shew_2177 2538274 - 2537678 - | hypothetical protein Shew_2178 2538651 - 2538406 - | hypothetical protein TERM 2448 2538777 - 2538763 - R 79 -2.8 -5.38958 | overlap 2538765 ACGCAGAAACAAAAA TGCCAA GTG TTGGGA ATCGCTGTTAAATGT Shew_2179 2539717 - 2538800 - | hypothetical protein Shew_2180 2540279 - 2539707 - | hypothetical protein TERM 2449 2540255 - 2540242 - G 72 -3.8 -4.73613 | CCATCACCAACAAAA GGAG GAAGCA CTCC TGACTCTTCAAACTT TERM 2450 2540650 - 2540667 + r 79 -4.2 -5.27938 | AGATTCAACATCTCA TTTCAC ACTTTC GTGAAA TTTTTCTTTAGGAAT TERM 2451 2541346 - 2541334 - R 70 -9.1 -3.14051 | overlap 2541332 GCACCTGCACGAAGA GCCTG CCG CAGGC AATAAGTAACATTGA Shew_2181 2541911 - 2541432 - | hypothetical protein TERM 2452 2541840 - 2541850 + g 70 -3.2 -4.78848 | overlap 2541846 TTCCTGGGCACTCAA CTCT GCG AGGG TTTTCTCTTTCCAAA Shew_2182 2542976 - 2541987 - | putative transglycosylase Shew_2183 2543542 - 2543261 - | hypothetical protein TERM 2453 2543624 - 2543645 + H 84 -8.7 -4.36914 | opp_overlap 2543624 2543623 2543621 2543628, overlap 2543625 2543628 GGATTATAATAATAT CTAACCGGC CCAG GCCGGTTAA TTTTATCAAGAGCAA TERM 2454 2543645 - 2543624 - H 74 -10.9 -2.70003 | opp_overlap 2543624 2543625 2543628, overlap 2543623 2543621 2543628 GGATTATAATAATAT CTAACCGGC CCAG GCCGGTTAA TTTTATCAAGAGCAA TERM 2455 2543625 - 2543644 + H 83 -12.2 -3.21934 | opp_overlap 2543624 2543623 2543621 2543628, overlap 2543624 2543628 GATTATAATAATATC TAACCGGC CCAG GCCGGTTA ATTTTATCAAGAGCA TERM 2456 2543641 - 2543628 - H 72 -9.5 -3.25494 | opp_overlap 2543625 2543624 2543628, overlap 2543624 2543623 2543621 TATAATAATATCTAA CCGGC CCAG GCCGG TTAATTTTATCAAGA TERM 2457 2543628 - 2543641 + H 79 -9.5 -3.75115 | opp_overlap 2543628 2543624 2543623 2543621, overlap 2543625 2543624 TATAATAATATCTAA CCGGC CCAG GCCGG TTAATTTTATCAAGA Shew_2184 2543669 - 2544334 + | septum site-determining protein MinC TERM 2458 2544738 - 2544752 + G 75 -11.4 -3.39908 | opp_overlap 2544736 2544735, overlap 2544737 CGGGCATCGAAACCG GCGCCA TGA TGGCGC TCTATTTTGCCGACA Shew_2185 2544359 - 2545168 + | septum site-determining protein MinD Shew_2186 2545171 - 2545431 + | cell division topological specificity factor MinE TERM 2459 2545498 - 2545473 - T 72 -10.5 -2.95894 | opp_overlap 2545478, overlap 2545478 CAGAATATGCATACA GAAAAGCCCTC AATT GAGGGCTTTTT CATGGGCGCCGTTTG TERM 2460 2545478 - 2545493 + T 91 -10.4 -4.72272 | opp_overlap 2545478 2545473 TATGCATACAGAAAA GCCCTC AATT GAGGGC TTTTTCATGGGCGCC TERM 2461 2545493 - 2545478 - T 91 -10.4 -4.61868 | opp_overlap 2545478, overlap 2545473 TATGCATACAGAAAA GCCCTC AATT GAGGGC TTTTTCATGGGCGCC Shew_2187 2546647 - 2545541 - | ribonuclease D TERM 2462 2546702 - 2546686 - R 100 -13.7 -4.66537 | opp_overlap 2546686 TCGGTGAACACAAAA GCCGGCA TAA TGCCGGC TTTGAGTCACCTACA TERM 2463 2546686 - 2546702 + r 100 -13.7 -3.65902 | opp_overlap 2546686 TCGGTGAACACAAAA GCCGGCA TAA TGCCGGC TTTGAGTCACCTACA Shew_2188 2548411 - 2546738 - | long-chain-fatty-acid--CoA ligase Shew_2189 2549545 - 2548610 - | alpha/beta hydrolase fold Shew_2190 2550396 - 2549548 - | hypothetical protein Shew_2191 2551180 - 2550479 - | hypothetical protein Shew_2192 2551697 - 2551326 - | hypothetical protein Shew_2193 2552506 - 2551763 - | peptidase M22, glycoprotease TERM 2464 2553290 - 2553310 + G 75 -11.1 -3.38072 | TATCTCGCCCCCTTG GTCAGCGCC ATT GGCGCTCAC TTCCTCTTCCATGAG Shew_2194 2552936 - 2553853 + | hypothetical protein Shew_2195 2553866 - 2555167 + | NADH dehydrogenase Shew_2196 2557105 - 2555180 - | helicase c2 TERM 2465 2556859 - 2556848 - G 72 -5.8 -4.40963 | opp_overlap 2556848 2556847, overlap 2556850 ATCTTTGAAAAACAA CTGC TCCT GCAG GTTTTTACTGCCGGT TERM 2466 2557332 - 2557316 - H 70 -10.1 -2.68952 | TTTAAATACAACTTA GGGCAGA CAC CCTGCCC ACTGATACGCCATAA TERM 2467 2557477 - 2557498 + H 100 -12.3 -5.18355 | opp_overlap 2557477 2557475 AAAAGCGATCTAAGA CCCCTGGAA GGAA TTCCGGGGG TTTTTAGTTTTTAGC TERM 2468 2557498 - 2557477 - H 73 -10.1 -3.11966 | opp_overlap 2557477, overlap 2557475 AAAAGCGATCTAAGA CCCCTGGAA GGAA TTCCGGGGG TTTTTAGTTTTTAGC hisG 2557577 - 2558476 + | ATP phosphoribosyltransferase TERM 2469 2559077 - 2559054 - g 70 -11.6 -2.95774 | GATATCTATCAGATA GGCGGCGCCC AGGC GATCGCCGCC TTAGCGCAGGGGACA Shew_2198 2558481 - 2559812 + | histidinol dehydrogenase Shew_2199 2559814 - 2560896 + | histidinol-phosphate aminotransferase Shew_2200 2560961 - 2562031 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase TERM 2470 2562620 - 2562605 - g 88 -7.5 -5.03314 | opp_overlap 2562611 TCCACCCGGAAAAAA GCGCC GCGGTG GGCGC CACCATATTAAGAAA hisH 2562028 - 2562702 + | imidazole glycerol phosphate synthase subunit HisH Shew_2202 2562699 - 2563436 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Shew_2203 2563418 - 2564191 + | imidazole glycerol phosphate synthase subunit HisF Shew_2204 2564220 - 2564840 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2471 2564893 - 2564869 - f 75 -9.9 -3.50332 | opp_overlap 2564869, overlap 2564865 TAGCCATACAATCAA GGGCGTCCG GGAGAAG CGGCCGCCC TGATCTAAATCTTGC TERM 2472 2565261 - 2565243 - g 74 -7.4 -4.23999 | opp_overlap 2565243 2565242 TCACACTCAAAACAA CTACATGC TTT GCCTGTAG CTTAATACTACTGCT TERM 2473 2565731 - 2565718 - g 73 -8.1 -4.19238 | GCTGCAACTTGAAAA CCTGC GCCT GCAGG AGATGAGTCACAGAG TERM 2474 2566115 - 2566082 - g 74 -4.5 -4.83615 | gap 1 CACCTCGCAGAAAAA GTCCGTCACGCCATCG AGT CGATGGAG-ATCGAAC TCGACGCTAAGCGCA Shew_2205 2565206 - 2566408 + | diguanylate cyclase TERM 2475 2566481 - 2566504 + F 93 -9.7 -4.9792 | AGTGCTAGGTTTTAT GTTTAAGGC AGGGAA GCCTTAAAC TTTTTATCTCCCATC Shew_2206 2566806 - 2567546 + | two component transcriptional regulator TERM 2476 2567724 - 2567696 - g 71 -7.3 -4.14243 | GACGCTACCGGAAAA CCAACAGGGAGAG CTG CTCACCGCGCTGG TCAAACATTATCGCG Shew_2207 2567553 - 2569835 + | integral membrane sensor signal transduction histidine kinase TERM 2477 2570225 - 2570208 - f 74 -7.7 -4.03978 | overlap 2570196 2570195 AATCTTGCAGAGAAA TCCCCCT CAGC AAGGGGA GCGGCGCCATGAGCC Shew_2208 2570346 - 2572163 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 2478 2572357 - 2572341 - f 79 -5.1 -5.06414 | opp_overlap 2572341, overlap 2572350 GCTCGCTAAGAAAAA GCTCGTA AAG CACAAGC TGATTGAGCACAAAC TERM 2479 2572411 - 2572441 + F 100 -13.4 -4.91712 | opp_overlap 2572406 2572411 CGTAAGTAAATTGAA GGGCGGAGATCA TCTCATT TGATCTCTGCCC TTTTTCTCGATTAGA TERM 2480 2572441 - 2572411 - f 83 -11.2 -3.33399 | opp_overlap 2572411, overlap 2572406 CGTAAGTAAATTGAA GGGCGGAGATCA TCTCATT TGATCTCTGCCC TTTTTCTCGATTAGA Shew_2209 2572977 - 2576453 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 2481 2576490 - 2576465 - f 79 -11.9 -2.53911 | opp_overlap 2576466, overlap 2576470 GTAAGTTGTAACCCA GGGAAGGCTCT GCCA AGAGCCTTCCT TTTTTTCTATCTAAA TERM 2482 2576466 - 2576489 + F 100 -15.4 -5.76633 | opp_overlap 2576465 2576470 TAAGTTGTAACCCAG GGAAGGCTCT GCCA AGAGCCTTCC TTTTTTTCTATCTAA Shew_2210 2576535 - 2577746 + | proprotein convertase, P Shew_2211 2578022 - 2579128 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 2483 2579235 - 2579203 - f 85 -7.7 -4.68994 | opp_overlap 2579207, overlap 2579207 AGGATTAGCTAAAAA CTAAGGCCAGCGT TCAACAG ACGCTGGCCTTTT TATGCGTGTTTATCT TERM 2484 2579231 - 2579207 - f 100 -12.9 -3.83042 | opp_overlap 2579207, overlap 2579203 TTAGCTAAAAACTAA GGCCAGCGT TCAACAG ACGCTGGCC TTTTTATGCGTGTTT TERM 2485 2579207 - 2579231 + F 100 -13.6 -4.92363 | opp_overlap 2579203 2579207 TTAGCTAAAAACTAA GGCCAGCGTT CAACA GACGCTGGCC TTTTTATGCGTGTTT Shew_2212 2579958 - 2582120 + | peptidyl-dipeptidase Dcp TERM 2486 2582144 - 2582160 + T 100 -13.7 -5.65177 | opp_overlap 2582144 TTCAGGCATTAAAAA GCGGCTC ATA GAGCCGC TTTTTTTATCGCTAT TERM 2487 2582160 - 2582144 - T 100 -13.7 -4.7497 | opp_overlap 2582144 TTCAGGCATTAAAAA GCGGCTC ATA GAGCCGC TTTTTTTATCGCTAT Shew_2213 2583172 - 2582237 - | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2488 2582926 - 2582904 - G 72 -3.5 -4.71186 | gap 1, opp_overlap 2582904 2582906, overlap 2582906 AGGATCAATACAAAA CT-CTCGATA TTCT CATCGAGTAG CTTATCGATCTCAGC TERM 2489 2583278 - 2583246 - R 100 -14.3 -4.32177 | opp_overlap 2583248 2583253 2583254, overlap 2583248 2583254 CCAGTTCAGAAGAAA CAGAAAAAGCCACTC AAG GAGTGGCCTTCTCTA TGTATTAAGTCGGAT TERM 2490 2583276 - 2583248 - R 100 -14.7 -3.76219 | opp_overlap 2583248 2583253 2583254, overlap 2583246 2583254 AGTTCAGAAGAAACA GAAAAAGCCACTC AAG GAGTGGCCTTCTC TATGTATTAAGTCGG TERM 2491 2583248 - 2583276 + r 73 -10.3 -3.11072 | opp_overlap 2583248 2583246 2583254, overlap 2583253 2583254 AGTTCAGAAGAAACA GAAAAAGCCACTC AAG GAGTGGCCTTCTC TATGTATTAAGTCGG TERM 2492 2583253 - 2583271 + r 72 -8.8 -3.69083 | opp_overlap 2583248 2583246 2583254, overlap 2583248 2583254 AGAAGAAACAGAAAA AGCCACTC AAG GAGTGGCC TTCTCTATGTATTAA TERM 2493 2583254 - 2583270 + r 82 -12.3 -2.80727 | opp_overlap 2583254 2583248 2583246, overlap 2583253 2583248 GAAGAAACAGAAAAA GCCACTC AAG GAGTGGC CTTCTCTATGTATTA TERM 2494 2583270 - 2583254 - R 100 -12.3 -5.28414 | opp_overlap 2583253 2583248 2583254, overlap 2583248 2583246 GAAGAAACAGAAAAA GCCACTC AAG GAGTGGC CTTCTCTATGTATTA Shew_2214 2583589 - 2583293 - | integration host factor, alpha subunit pheT 2585981 - 2583594 - | phenylalanyl-tRNA synthetase subunit beta TERM 2495 2585260 - 2585270 + g 70 -3.2 -4.7497 | overlap 2585256 ATAGAGCGAATGCCG CTGC GAC GTAG TTTTTCCTGCATCCA pheS 2587007 - 2585997 - | phenylalanyl-tRNA synthetase subunit alpha Shew_2217 2587373 - 2588875 + | methyl-accepting chemotaxis sensory transducer TERM 2496 2588913 - 2588947 + F 79 -12.1 -2.50307 | overlap 2588912 AAGCTAGTCACTTTA ACGGCTTAGGGAGGC AACTC GTCACCCTAAGCCGA CTTCATAAGAGTTTA TERM 2497 2590165 - 2590183 + G 71 -6.6 -4.23674 | CCAGGCCAACGCCAT CGCGCTGA AGA TAGGCGCG TTTCTGTTGCTGGCG Shew_2218 2589005 - 2591644 + | signal transduction histidine kinase regulating citrate/malate metabolism TERM 2498 2591674 - 2591649 - T 100 -13.3 -5.3236 | opp_overlap 2591647 2591646 2591644 ATAAGGCATAAAAAA TCCCCGGAGGT AGCC ACTTCCGGGGA CGCTATTTTGTCTGC Shew_2219 2592629 - 2591703 - | hypothetical protein TERM 2499 2592675 - 2592659 - R 77 -9.4 -3.6187 | opp_overlap 2592658 ACCCAATGAAACGAA GCCGAC TGAGT GTCGGC CTATCTACAATCTTA Shew_2220 2593062 - 2592688 - | hypothetical protein Shew_2221 2593373 - 2593080 - | hypothetical protein Shew_2222 2593817 - 2593467 - | hypothetical protein TERM 2500 2593869 - 2593846 - R 75 -11.1 -2.9294 | opp_overlap 2593838 CACACGACTTATATA TGAGCATGG TATAGC CCATGCTCA ATATCCAGTTTCTAC Shew_2223 2594524 - 2593937 - | YceI family protein TERM 2501 2594651 - 2594673 + r 78 -10.6 -3.18912 | opp_overlap 2594653, overlap 2594653 TTTATCCCAATAAAA AAGCCCTAAC TCA GTTAGGGCTC TTGCTAGATAAATGA TERM 2502 2594671 - 2594653 - R 100 -13.2 -5.46657 | opp_overlap 2594653 2594651 TATCCCAATAAAAAA GCCCTAAC TCA GTTAGGGC TCTTGCTAGATAAAT TERM 2503 2594653 - 2594671 + r 91 -13.2 -3.15699 | opp_overlap 2594653, overlap 2594651 TATCCCAATAAAAAA GCCCTAAC TCA GTTAGGGC TCTTGCTAGATAAAT Shew_2224 2597396 - 2594700 - | DNA topoisomerase I TERM 2504 2596752 - 2596766 + g 84 -7 -5.00616 | opp_overlap 2596754, overlap 2596754 CACACGCCCTGCAGA GAGGCC ACG GGCCAC TTTTTTCCACAGCAG Shew_2225 2597707 - 2599044 + | succinylarginine dihydrolase TERM 2505 2599097 - 2599067 - T 78 -10.7 -3.17526 | gap 1, opp_overlap 2599067 2599073, overlap 2599073 TTACTAAGTTAAAAC TGAAAA-GCCATCT GAAA AGATGGCTTTTTCA CTTAATGCTAATATC TERM 2506 2599067 - 2599097 + T 74 -10.7 -2.54192 | gap 1, opp_overlap 2599067 2599073, overlap 2599073 TTACTAAGTTAAAAC TGAAAA-GCCATCT GAAA AGATGGCTTTTTCA CTTAATGCTAATATC TERM 2507 2599090 - 2599073 - T 86 -9.9 -4.43272 | opp_overlap 2599067 2599073, overlap 2599067 AGTTAAAACTGAAAA GCCATCT GAAA AGATGGC TTTTTCACTTAATGC TERM 2508 2599073 - 2599090 + T 91 -9.9 -4.7629 | opp_overlap 2599073 2599067, overlap 2599067 AGTTAAAACTGAAAA GCCATCT GAAA AGATGGC TTTTTCACTTAATGC TERM 2509 2599324 - 2599344 + T 100 -15.5 -4.20806 | opp_overlap 2599324 TTTGGGATGTAAAAA TCCACCTGC ATA GCAGGTGGA TTTGCTTTTGAGGTA TERM 2510 2599344 - 2599324 - T 100 -15.5 -4.65895 | opp_overlap 2599324 TTTGGGATGTAAAAA TCCACCTGC ATA GCAGGTGGA TTTGCTTTTGAGGTA TERM 2511 2599600 - 2599618 + T 100 -14.6 -3.66178 | opp_overlap 2599597 2599595 2599594 CAGAAGGAACGATCA CCACCTCC ATA GGAGGTGG TTTCAGATTGCCCAA TERM 2512 2599640 - 2599659 + T 73 -9.2 -3.51924 | opp_overlap 2599640 ATTGCCCAAAAAAAA GCGCACAG TAAA CTGCGCGC TTCTATAAATAACCA TERM 2513 2599659 - 2599640 - T 100 -11.4 -5.75945 | opp_overlap 2599640 ATTGCCCAAAAAAAA GCGCACAG TAAA CTGCGCGC TTCTATAAATAACCA Shew_2226 2602142 - 2599683 - | Ig domain-containing protein TERM 2514 2602440 - 2602450 + G 86 -6.8 -5.02074 | ATTTTAACCGGGCTA CTGC TAC GCAG TTTTTTCCCCGGTAG Shew_2227 2602359 - 2603678 + | sodium:dicarboxylate symporter TERM 2515 2603710 - 2603736 + T 100 -13.8 -3.61946 | opp_overlap 2603715, overlap 2603715 CAATCTGTAAAAAGG AAAAAGGCGTCC AAT GGACGCCTTTTA TATTTGTATACGGTA TERM 2516 2603731 - 2603715 - T 100 -13.7 -5.18355 | opp_overlap 2603710 2603715 TGTAAAAAGGAAAAA GGCGTCC AAT GGACGCC TTTTATATTTGTATA TERM 2517 2603715 - 2603731 + T 100 -13.7 -4.87328 | opp_overlap 2603715, overlap 2603710 TGTAAAAAGGAAAAA GGCGTCC AAT GGACGCC TTTTATATTTGTATA Shew_2228 2605120 - 2603816 - | inosine kinase Shew_2229 2606331 - 2605318 - | ferrochelatase TERM 2518 2606399 - 2606414 + r 91 -10.4 -4.64766 | opp_overlap 2606399 CCTTGCATAAAAAAA GCCCAC CTAG GTGGGC TTTTTCAAATATGAG TERM 2519 2606414 - 2606399 - R 100 -10.4 -5.60993 | opp_overlap 2606399 CCTTGCATAAAAAAA GCCCAC CTAG GTGGGC TTTTTCAAATATGAG Shew_2230 2607112 - 2606468 - | adenylate kinase TERM 2520 2607435 - 2607415 - R 73 -9.1 -3.53712 | opp_overlap 2607419, overlap 2607419 ATGGCGAACAACCAA GAAATCGTC TGG AACGATTTC TAACAGCATTGCTGA Shew_2231 2608495 - 2607656 - | thioredoxin domain-containing protein TERM 2521 2608511 - 2608521 + r 70 -5.4 -4.41348 | opp_overlap 2608518, overlap 2608519 AATATCTCTTTTATC GAGA GCA TCTC TTTGTTTGAGAGAGC TERM 2522 2608598 - 2608574 - R 100 -15.9 -2.73781 | opp_overlap 2608577, overlap 2608577 GATAAGTAGATAGCA TAAGAGGCAGT CAA ACTGCCTCTTA CTAACTCTAGCTTAG TERM 2523 2608595 - 2608577 - R 100 -13.2 -3.50893 | opp_overlap 2608577, overlap 2608574 AAGTAGATAGCATAA GAGGCAGT CAA ACTGCCTC TTACTAACTCTAGCT TERM 2524 2608577 - 2608595 + r 91 -13.2 -3.2056 | opp_overlap 2608577 2608574 AAGTAGATAGCATAA GAGGCAGT CAA ACTGCCTC TTACTAACTCTAGCT Shew_2232 2610535 - 2608616 - | heat shock protein 90 TERM 2525 2610645 - 2610665 + r 89 -8.3 -4.77567 | opp_overlap 2610645, overlap 2610640 ATTGGTCAAAAAAAA TCCAGCTCA AGA TGAACTGGA TTTTATTGTAGGACT TERM 2526 2610665 - 2610645 - R 100 -10.5 -5.75945 | opp_overlap 2610645 2610640 ATTGGTCAAAAAAAA TCCAGCTCA AGA TGAACTGGA TTTTATTGTAGGACT Shew_2233 2611290 - 2610691 - | recombination protein RecR TERM 2527 2611313 - 2611336 + r 70 -10.3 -2.60257 | overlap 2611310 2611311 AAGGCATCTTCATGC CAGGTGGCA ACTGCA TGCCGCCTG TGACTTCTGCCATCT Shew_2234 2611622 - 2611293 - | hypothetical protein TERM 2528 2611847 - 2611800 - R 74 -10 -3.16921 | opp_overlap 2611807, overlap 2611790 2611803 AGCAAGTCGTACTAA CAACTGACTCAAGCTATCGCTC ATGT AAGCGATAACTCGCGTGAGTTA AGACTCCTCTGTCGC TERM 2529 2611844 - 2611803 - R 79 -9.5 -3.72592 | opp_overlap 2611807, overlap 2611800 AAGTCGTACTAACAA CTGACTCAAGCTATCGCTC ATGT AAGCGATAACTCGCGTGAG TTAAGACTCCTCTGT Shew_2235 2615186 - 2611845 - | DNA polymerase III, subunits gamma and tau TERM 2530 2612149 - 2612169 + g 85 -14.7 -3.52539 | TCGAGCTGACTGATG GCGCCTGGC GCC GCCAGGTGC TTCTGATTGGGCTTA TERM 2531 2613010 - 2613024 + g 77 -2.7 -5.15634 | GCCCCAGGCTTCTTA GCGCC GACTA GGGGC TTTTTTGATGCGCTC TERM 2532 2613658 - 2613668 + g 73 -8.2 -4.06502 | overlap 2613616 TCAGCGCTAAGCTCA GGGC TGT GCCC TTTGCTTTGGGCCTG TERM 2533 2614145 - 2614120 - G 77 -10.4 -3.72576 | GCCTCGGGCACGAAA GCGATGGCGC GCAGCA GCGCCATCTC CAGGCCTGACTTAGG TERM 2534 2614942 - 2614929 - G 71 -8.1 -3.98842 | GATAAGATCGACAAA TCGCC CCTG GGCGA TCTCGACACAGCTGG TERM 2535 2615513 - 2615535 + r 73 -9 -3.54653 | opp_overlap 2615514, overlap 2615514 TGCCCAGATAGCAAA ATGCCGCGGC ATA GCCACGGCAC TTATATAATCGACAT TERM 2536 2615534 - 2615514 - R 100 -14.7 -4.39166 | opp_overlap 2615514 2615513 GCCCAGATAGCAAAA TGCCGCGGC ATA GCCACGGCA CTTATATAATCGACA TERM 2537 2615514 - 2615534 + r 82 -12.5 -2.72471 | opp_overlap 2615514, overlap 2615513 GCCCAGATAGCAAAA TGCCGCGGC ATA GCCACGGCA CTTATATAATCGACA Shew_2236 2616164 - 2615571 - | adenine phosphoribosyltransferase TERM 2538 2616179 - 2616150 - G 71 -4.9 -4.58395 | opp_overlap 2616157, overlap 2616157 TTGAGCCCTTAAAAA GGACAAACTGGCC ATAG GGCCAGTTTTGAC TAGAATTTTCGGCTA TERM 2539 2616157 - 2616172 + g 86 -10.4 -4.20106 | opp_overlap 2616157 2616150 CTTAAAAAGGACAAA CTGGCC ATAG GGCCAG TTTTGACTAGAATTT TERM 2540 2616172 - 2616157 - G 86 -10.4 -4.2687 | opp_overlap 2616157, overlap 2616150 CTTAAAAAGGACAAA CTGGCC ATAG GGCCAG TTTTGACTAGAATTT Shew_2237 2616653 - 2616285 - | hypothetical protein TERM 2541 2616691 - 2616674 - R 100 -9.9 -5.60993 | opp_overlap 2616674 CCTCGCATAAAAAAA CCACTCA AGAA TGAGTGG TTAGTATACCCGACT TERM 2542 2616674 - 2616691 + r 72 -9.9 -3.25942 | opp_overlap 2616674 CCTCGCATAAAAAAA CCACTCA AGAA TGAGTGG TTAGTATACCCGACT Shew_2238 2616870 - 2616748 - | hypothetical protein Shew_2239 2617716 - 2616973 - | hypothetical protein TERM 2543 2617529 - 2617516 - G 81 -3.1 -5.24531 | gap 1, overlap 2617517 2617518 ATGGGTCACAAAAAA CTGCTG CAC CAGC-G CCTGCCAGTCATCTT TERM 2544 2617633 - 2617669 + g 75 -11 -3.51778 | gap 2, overlap 2617632 ATAGATCCCCATACG CCTTTCGTCCGTCCCCTG AGG CAGGGG-CG-ATGAAGGG TCTTTGATGTAATCG Shew_2240 2618553 - 2617717 - | hypothetical protein TERM 2545 2618629 - 2618601 - R 100 -11.2 -4.66609 | gap 1, overlap 2618604 TACCTTATGTAAAAA GAATTAGGCCAGT ATTC ACTGGCCTAAT-C GACATGGGCAATTGC TERM 2546 2618627 - 2618604 - R 100 -14 -4.44608 | overlap 2618601 CTTATGTAAAAAGAA TTAGGCCAGT ATTC ACTGGCCTAA TCGACATGGGCAATT Shew_2241 2619096 - 2618656 - | hypothetical protein Shew_2242 2619538 - 2620467 + | dihydrouridine synthase, DuS Shew_2243 2620720 - 2621076 + | TraR/DksA family transcriptional regulator TERM 2547 2621238 - 2621266 + T 89 -14.7 -2.75064 | opp_overlap 2621243, overlap 2621243 TTAATAACCCCCATA AAAAAGCCTCCTG AAT CAGGAGGCTTTTA TCGTTAAGTCACAGG TERM 2548 2621261 - 2621243 - T 100 -14.6 -5.25803 | opp_overlap 2621238 2621243 AACCCCCATAAAAAA GCCTCCTG AAT CAGGAGGC TTTTATCGTTAAGTC TERM 2549 2621243 - 2621261 + T 100 -14.6 -4.55491 | opp_overlap 2621243, overlap 2621238 AACCCCCATAAAAAA GCCTCCTG AAT CAGGAGGC TTTTATCGTTAAGTC Shew_2244 2623976 - 2621298 - | TonB-dependent receptor TERM 2550 2624017 - 2623994 - R 70 -9 -3.21276 | gap 1, opp_overlap 2623993, overlap 2623999 GTTTCCCTCACAATA CGAAAC-CAGA CAA TCTGAGTTTCG ATCATTAATTTATTT TERM 2551 2624108 - 2624094 - R 71 -5 -4.5478 | AAAAAGATAAAATAA GTCAAC GCA GTTAAC ATGAAAATAACCACA TERM 2552 2624557 - 2624534 - R 74 -8.2 -4.01137 | opp_overlap 2624534 TACAGAAGTGATAAA GACCAAATGA TGTC TCACTCGGTC TTAAATAGGTTAAAG Shew_2245 2625481 - 2624567 - | hypothetical protein TERM 2553 2625678 - 2625694 + r 85 -11.5 -3.54638 | opp_overlap 2625672 TAAATACCACTGTAA GCCTCGC CCT GCGGGGC TTTGCGACGACTTGT TERM 2554 2625777 - 2625741 - R 72 -8.8 -3.57977 | opp_overlap 2625752, overlap 2625744 2625752 CAACACTAGAAAAAG GCATAAAAAAAGCCGC ACGAG GCGGCTTTTACTACAC ACTTTTTTAGCTGCG TERM 2555 2625766 - 2625752 - R 100 -8.5 -5.68039 | opp_overlap 2625752, overlap 2625744 2625741 AAAGGCATAAAAAAA GCCGC ACGAG GCGGC TTTTACTACACACTT TERM 2556 2625752 - 2625766 + r 80 -8.5 -4.25848 | opp_overlap 2625744 2625741 2625752 AAAGGCATAAAAAAA GCCGC ACGAG GCGGC TTTTACTACACACTT Shew_2246 2626665 - 2625784 - | pseudouridine synthase Shew_2247 2627275 - 2626643 - | putative transcriptional regulator Shew_2248 2628064 - 2627276 - | chromosome segregation and condensation protein ScpA Shew_2249 2628848 - 2628228 - | Sua5/YciO/YrdC/YwlC family protein Shew_2250 2629705 - 2628845 - | phosphotransferase domain-containing protein TERM 2557 2628961 - 2628948 - G 76 -6.7 -4.67038 | CCGGGAAAATGAAAA TCGCT TCCC AGCGA GGCATGCAGTTCATT TERM 2558 2630068 - 2630021 - H 100 -15.2 -3.8398 | gap 1, opp_overlap 2630028 2630035, overlap 2630035 ATGTAAAAGAGACAA GATTTAA-ACAAAAAGCCCGCAC TCG ATGCGGGCTTTTTGCATTTAATC GCCTAATTTTATTAA TERM 2559 2630028 - 2630060 + H 89 -15 -2.8478 | opp_overlap 2630021 2630035, overlap 2630035 AGAGACAAGATTTAA ACAAAAAGCCCGCA CTCGA TGCGGGCTTTTTGC ATTTAATCGCCTAAT TERM 2560 2630035 - 2630053 + H 100 -11.7 -4.82855 | opp_overlap 2630035 2630021, overlap 2630028 AGATTTAAACAAAAA GCCCGCA CTCGA TGCGGGC TTTTTGCATTTAATC TERM 2561 2630053 - 2630035 - H 100 -12.4 -5.31519 | opp_overlap 2630028 2630035, overlap 2630021 AGATTTAAACAAAAA GCCCGCAC TCG ATGCGGGC TTTTTGCATTTAATC TERM 2562 2630222 - 2630191 - g 81 -10.9 -4.06384 | CGTCAACACGATAAA GGAGCGGATCACC TATCAT GATGATCCTCTCC AGCTGTATCAGCACC TERM 2563 2630500 - 2630474 - g 75 -5.8 -4.57569 | TTAGGCCTGCAAAAA GACACCTCCCTC CTG GATGAAGATGCC AGATTAAAATCTACC Shew_2251 2630153 - 2631706 + | anthranilate synthase component I Shew_2252 2631703 - 2632311 + | anthranilate synthase component II Shew_2253 2632314 - 2633363 + | anthranilate phosphoribosyltransferase Shew_2254 2633363 - 2634814 + | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase Shew_2255 2634863 - 2636074 + | tryptophan synthase subunit beta TERM 2564 2636831 - 2636805 - g 75 -13 -3.2056 | opp_overlap 2636800 2636820 ATCGAGACCCACCAA GACGATGAGCAG GCC CTGCTCAGCGCC CTGGGTCAGTTTACC trpA 2636067 - 2636870 + | tryptophan synthase subunit alpha TERM 2565 2636926 - 2636909 - f 100 -12.7 -4.28774 | opp_overlap 2636909 TCATCCAATCTAAAA TCCCCGC ACCA GCGGGGA TTTTTTTTATCCACG TERM 2566 2636909 - 2636926 + F 100 -12.7 -5.93809 | opp_overlap 2636909 TCATCCAATCTAAAA TCCCCGC ACCA GCGGGGA TTTTTTTTATCCACG Shew_2257 2637166 - 2637789 + | HAD family hydrolase Shew_2258 2637883 - 2638413 + | NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 Shew_2259 2639775 - 2638573 - | metal dependent phosphohydrolase Shew_2260 2640162 - 2640707 + | intracellular septation protein A Shew_2261 2640707 - 2641006 + | YciI-like protein Shew_2262 2641030 - 2641839 + | exonuclease III TERM 2567 2641859 - 2641873 + T 100 -12.8 -5.4833 | opp_overlap 2641859 TGATGGATCGAAAAA GGCGCC GAG GGCGCC TTTTTTATTGAGTCA TERM 2568 2641873 - 2641859 - T 100 -12.8 -4.67353 | opp_overlap 2641859 TGATGGATCGAAAAA GGCGCC GAG GGCGCC TTTTTTATTGAGTCA Shew_2263 2643363 - 2641915 - | methyl-accepting chemotaxis sensory transducer Shew_2264 2643929 - 2643435 - | hypothetical protein TERM 2569 2644109 - 2644130 + r 91 -11.6 -3.81951 | opp_overlap 2644109, overlap 2644128 AACGGCGAGAAAAAA GCCAGTCG ATATAA CGACTGGC TTTAATGGTCTACAG TERM 2570 2644130 - 2644109 - R 100 -11.6 -5.25803 | opp_overlap 2644109 2644128 AACGGCGAGAAAAAA GCCAGTCG ATATAA CGACTGGC TTTAATGGTCTACAG Shew_2265 2646407 - 2644164 - | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding TERM 2571 2644274 - 2644240 - G 70 -11.2 -2.90194 | ATGGCGTTAACGATA CTGGGCGCGATGGGCG GTA CGCCCGGCTCGCCCAC CCCGGCGGGCGGCGC Shew_2266 2646910 - 2646404 - | 2Fe-2S iron-sulfur cluster binding domain-containing protein Shew_2267 2647736 - 2646990 - | hypothetical protein TERM 2572 2647234 - 2647217 - G 77 -9.8 -3.98842 | CATAATAGGCACAAA CCCGGG TGTTTG CCCGGG CGCGGGCGCGAAACA Shew_2268 2648830 - 2647733 - | hypothetical protein TERM 2573 2648957 - 2648936 - R 100 -12.3 -5.32944 | opp_overlap 2648936 TTCACAACGAAAAAA CGGCGATTC GAAT GAACCGCCG TCTTAAAACAAGCAT TERM 2574 2648936 - 2648957 + r 73 -10.1 -3.01791 | opp_overlap 2648936 TTCACAACGAAAAAA CGGCGATTC GAAT GAACCGCCG TCTTAAAACAAGCAT Shew_2269 2649651 - 2649007 - | beta-lactamase domain-containing protein Shew_2270 2649838 - 2651127 + | alpha/beta hydrolase fold TERM 2575 2651136 - 2651154 + F 80 -8.8 -4.16279 | CAGGTAAATCTTCTC GGGGCG TATCGCT CGCCCC TTTTCCCCTGCTCTA TERM 2576 2651279 - 2651295 + F 74 -9.5 -3.42147 | TTTGTTAGGGTGTTT TGAAGGT CGT ACCTTCA TTGCTGTTAATTGCC TERM 2577 2651308 - 2651320 + F 73 -9.1 -3.49475 | TCATTGCTGTTAATT GCCTG CGG CAGGC TTATGTGCAGATACG Shew_2271 2652156 - 2653775 + | hypothetical protein TERM 2578 2653802 - 2653854 + G 75 -11.3 -3.39995 | overlap 2653803 2653803 2653805 TTAGAGGCGTTGTGT TCGCTATTATTCGGCGCTGCACTGT TTT ACAGTGCAGCGCCCGGGGATACTGG TGTCTCTTTTTTCCC TERM 2579 2653803 - 2653853 + G 73 -12.6 -2.62912 | overlap 2653802 2653803 2653805 TAGAGGCGTTGTGTT CGCTATTATTCGGCGCTGCACTGT TTT ACAGTGCAGCGCCCGGGGATACTG GTGTCTCTTTTTTCC Shew_2272 2653796 - 2654341 + | hypothetical protein TERM 2580 2654584 - 2654600 + T 74 -9.5 -3.32022 | TTTGTTAAGGTGATT TGAAGGT CGT ACCTTCA TTGCTATCTAACGCC Shew_2273 2655991 - 2654978 - | transposase IS116/IS110/IS902 family protein Shew_2274 2656418 - 2658226 + | AAA ATPase TERM 2581 2658245 - 2658228 - T 79 -9.1 -3.92602 | overlap 2658229 TTAATAGTTTATAAA CTCCCCC CTCC GGGGAAG GGGGCACTCCAATAG TERM 2582 2658251 - 2658229 - T 70 -9.8 -2.95079 | overlap 2658228 TAATAGTTTATAAAC TCCCCCCTCC GGG GAAGGGGGCA CTCCAATAGTCACTC Shew_2275 2659058 - 2658261 - | extradiol ring-cleavage dioxygenase III subunit B TERM 2583 2659204 - 2659218 + r 74 -10 -3.17194 | opp_overlap 2659192 TAACCTGTGGGCCGA CAGGCA CTA TGCCTG TTGGGTTAAGGGCCT Shew_2276 2660155 - 2659181 - | glutathione S-transferase Shew_2277 2660674 - 2660234 - | DoxX family protein Shew_2278 2661850 - 2660936 - | LysR family transcriptional regulator TERM 2584 2661768 - 2661821 + g 70 -10.4 -3.25491 | gap 2, overlap 2661769 TGTGAGGAGAGCCCA AGCCTGTCTGCCGCCTTGGTGAAGGA ACCC TCCTGCACCACGGCGGTA-A-AGGCC TTCATGGTATCGATT TERM 2585 2661769 - 2661820 + g 75 -13.9 -2.54812 | gap 2, overlap 2661768 GTGAGGAGAGCCCAA GCCTGTCTGCCGCCTTGGTGAAGGA ACCC TCCTGCACCACGGCGGTA-A-AGGC CTTCATGGTATCGAT TERM 2586 2662027 - 2661985 - R 93 -10.7 -4.46652 | gap 1, opp_overlap 2661990 2661991, overlap 2661991 TAAAGAAAAAGCAAA GAAAAAGGCCACAGCAGC GGGAGCGT GC-GCTGTGGCCCTTGTC CCCAGACTCGGCACT TERM 2587 2661991 - 2662021 + r 77 -11.2 -2.57344 | gap 1, opp_overlap 2661991 2661985, overlap 2661990 AAAAGCAAAGAAAAA GGCCACAGCAGCG GGAGCG TGC-GCTGTGGCC CTTGTCCCCAGACTC TERM 2588 2662021 - 2661991 - R 100 -10.5 -5.43974 | gap 1, opp_overlap 2661990 2661991, overlap 2661985 AAAAGCAAAGAAAAA GGCCACAGCAGC GGGAGCGT GC-GCTGTGGCC CTTGTCCCCAGACTC Shew_2279 2662444 - 2662064 - | tetraheme cytochrome c Shew_2280 2664170 - 2662512 - | phenylalanine/histidine ammonia-lyase Shew_2281 2665766 - 2664207 - | flavocytochrome c TERM 2589 2666769 - 2666752 - g 77 -9.8 -3.96148 | TTTGGCTATGAGAAA GGCGCC TTCACC GGCGCC GAGCATCGCAAGGCA Shew_2282 2665963 - 2667486 + | Fis family transcriptional regulator TERM 2590 2667529 - 2667557 + T 78 -10.3 -3.70902 | overlap 2667530 ATACTTGGTGTTAAG TGCTTAGCGTTAG AAA CTGGCGCTAAGCC TTTAAATATCAGAGA TERM 2591 2667530 - 2667556 + T 86 -13.8 -2.82327 | overlap 2667529 TACTTGGTGTTAAGT GCTTAGCGTTAG AAA CTGGCGCTAAGC CTTTAAATATCAGAG TERM 2592 2667582 - 2667597 + T 75 -9 -3.60792 | opp_overlap 2667582 CAGAGACCAAAAAAA GCACTC CGAG GAGTGC TTTGAACCTTGCAGG TERM 2593 2667597 - 2667582 - T 100 -9 -5.60864 | opp_overlap 2667582 CAGAGACCAAAAAAA GCACTC CGAG GAGTGC TTTGAACCTTGCAGG Shew_2283 2668781 - 2667624 - | porin TERM 2594 2668798 - 2668811 + H 100 -4.5 -5.83226 | ACATTTTCCCTTTAT CAGTG TTTA CGCTG TTTTTTTGTTAGCTT TERM 2595 2668940 - 2668918 - H 72 -7.1 -4.02742 | gap 1, opp_overlap 2668924, overlap 2668931 TAGAATAAGATCAAA CGT-TCACGA AATA TCGTGATACG TCATCACTAAATATC Shew_2284 2669070 - 2669291 + | hypothetical protein Shew_2285 2670378 - 2669323 - | UDP-glucose 4-epimerase Shew_2286 2671921 - 2670362 - | SSS family solute/sodium (Na+) symporter Shew_2287 2673189 - 2672008 - | galactokinase TERM 2596 2672669 - 2672694 + g 70 -5.3 -4.4009 | gap 1, overlap 2672670 CCAACGAATTCATTC TCCGC-CTGCTG GCC CAGCTGCGCGGC TTTTATGCCGTCGAC Shew_2288 2674322 - 2673231 - | galactose-1-phosphate uridylyltransferase TERM 2597 2675179 - 2675145 - g 73 -5 -4.61199 | gap 1, overlap 2675147 2675174 AGGCTACAGAGAAAA CTTCTGCCTG-CGGG ATGTCG CCCATCAGACAGAGG GGGCGGCCCTGCTGA Shew_2289 2674801 - 2678010 + | glycosy hydrolase family protein TERM 2598 2678034 - 2678061 + T 100 -13.4 -4.7497 | CGGTATTGGCCATTT GGCGAGTGCGGC GATT GTCTCACTCGCC TTTTTACTGACTAAC Shew_2290 2678579 - 2678109 - | hypothetical protein Shew_2291 2679115 - 2678579 - | hypothetical protein Shew_2292 2679244 - 2680143 + | LysR family transcriptional regulator Shew_2293 2681839 - 2680226 - | tryptophan halogenase Shew_2294 2684159 - 2681952 - | hypothetical protein TERM 2599 2684214 - 2684198 - R 82 -6.6 -4.90471 | AGTCAAAATATAAAA TAAGCC GATAA GGCTTA ACCTAATAATCGAAG Shew_2295 2685344 - 2684469 - | AraC family transcriptional regulator Shew_2296 2685678 - 2688482 + | TonB-dependent receptor TERM 2600 2688535 - 2688558 + F 100 -13.2 -5.61596 | opp_overlap 2688519 GCAATCGTTTTGTTC GCCCATTACC ACTA GGTGATGGGC TTTTTTTATCCCCAT TERM 2601 2688668 - 2688639 - f 91 -11.5 -4.07687 | opp_overlap 2688647, overlap 2688642 AGTGTTTCTCGAAAA CTACTCAAGGGCT GATT AGCCCTTGAATGG GTCAGCCTGGATGGC TERM 2602 2688665 - 2688642 - f 81 -11.8 -3.08032 | opp_overlap 2688647, overlap 2688639 GTTTCTCGAAAACTA CTCAAGGGCT GATT AGCCCTTGAA TGGGTCAGCCTGGAT Shew_2297 2688763 - 2690337 + | PEGA domain-containing protein TERM 2603 2691887 - 2691865 - g 79 -8.4 -4.51812 | TTGGAGAACAACAAA TGGTCAGAGG TGA CCTCTACCCA CAACCTGCATCTGCC TERM 2604 2692373 - 2692355 - g 70 -3 -4.71828 | AGCTCATCAAGAAAA CCGTTACC AAG GGCGACAG CCTAGATCTCAACAT Shew_2298 2690488 - 2692431 + | putative alpha-glucosidase TERM 2605 2692441 - 2692487 + T 73 -4.5 -4.73864 | gap 1, overlap 2692442 2692443 2692446 CGTTAAACGTCCCAC TCCAAGGGTCTGAGTCGCAT CACACTCC ATGCG-TTCAGGCCCTTGCC TTTTCTCTTGCTTCC TERM 2606 2692443 - 2692485 + T 77 -11.5 -2.64856 | gap 1, overlap 2692442 2692441 2692446 TTAAACGTCCCACTC CAAGGGTCTGAGTCGCAT CACACTCC ATGCG-TTCAGGCCCTTG CCTTTTCTCTTGCTT Shew_2299 2694571 - 2692559 - | DNA topoisomerase III TERM 2607 2692587 - 2692607 + g 83 -9 -4.57073 | gap 1 TTAGCCCTTGTTTTA GAC-GCGGC TCTA GCCGCAGTC TTTTTCGCCCCGCTA Shew_2300 2694723 - 2694998 + | hypothetical protein TERM 2608 2695123 - 2695104 - T 100 -11.4 -5.31275 | opp_overlap 2695104 TCTGACCACAAAAAA GGCGCCTC CCAA GAGACGCC TATATTACAGATATG Shew_2301 2697268 - 2695151 - | methyl-accepting chemotaxis sensory transducer TERM 2609 2696408 - 2696447 + g 75 -9.9 -3.85864 | gap 1, opp_overlap 2696406 2696429 CCCGGTCAACTGACT GGCG-AGCGACGGGGCGA TAGAC TCGCCCAGTGGCCGCGCC TTCTTATCATAGTGA TERM 2610 2697133 - 2697158 + g 80 -5.3 -4.87665 | overlap 2697127 2697135 CATCATGCAGCGCAC CTTGCACCTGG CCCG CCAGTTGCGCG TTTTTATCGCTGAGC TERM 2611 2697413 - 2697430 + r 89 -8.4 -4.65895 | opp_overlap 2697413 TGCCCCATAAAAAAA CCGACC ACTAGG GGTCGG TTTTTAGCTGACGCA TERM 2612 2697430 - 2697413 - R 100 -8.4 -5.60993 | opp_overlap 2697413 TGCCCCATAAAAAAA CCGACC ACTAGG GGTCGG TTTTTAGCTGACGCA Shew_2302 2698971 - 2697457 - | amidophosphoribosyltransferase Shew_2303 2699547 - 2699059 - | colicin V production protein TERM 2613 2699731 - 2699710 - R 100 -13 -4.9792 | opp_overlap 2699710 TAGCGCAGACAAAAA CGCCCAGG ACAAAG CCTGGGCG TTTGGAAGTGATAAC TERM 2614 2699710 - 2699731 + r 100 -13 -3.58343 | opp_overlap 2699710 TAGCGCAGACAAAAA CGCCCAGG ACAAAG CCTGGGCG TTTGGAAGTGATAAC Shew_2304 2700431 - 2699766 - | sporulation domain-containing protein Shew_2305 2701724 - 2700432 - | FolC bifunctional protein Shew_2306 2702574 - 2701789 - | tRNA pseudouridine synthase A TERM 2615 2702783 - 2702768 - R 100 -8.2 -5.60993 | opp_overlap 2702768 GCCGCCATAAAAAAA CGGCGC CTAA GCACCG TTCTTCAAATCGCTT Shew_2307 2705509 - 2702822 - | hypothetical protein TERM 2616 2705674 - 2705642 - R 86 -12.9 -2.85021 | opp_overlap 2705650, overlap 2705650 AAACAAGTGATCACA CAAAAAAAGCCTGCA AAC TGCAGGCTTTTTCTC CACTTATGCGCTACT TERM 2617 2705666 - 2705650 - R 100 -12.3 -5.74122 | opp_overlap 2705650, overlap 2705642 GATCACACAAAAAAA GCCTGCA AAC TGCAGGC TTTTTCTCCACTTAT TERM 2618 2705650 - 2705666 + r 100 -12.3 -4.88388 | opp_overlap 2705642 2705650 GATCACACAAAAAAA GCCTGCA AAC TGCAGGC TTTTTCTCCACTTAT Shew_2308 2706726 - 2705710 - | aspartate-semialdehyde dehydrogenase Shew_2309 2707859 - 2706729 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 2619 2707975 - 2707960 - R 100 -10.4 -5.24129 | opp_overlap 2707960 2707951 TTCGGGCACAAAAAA GGAGCC CTAA GGCTCC TTTTCGAGAGTTTTG TERM 2620 2707960 - 2707975 + r 82 -10.4 -4.14013 | opp_overlap 2707960, overlap 2707951 TTCGGGCACAAAAAA GGAGCC CTAA GGCTCC TTTTCGAGAGTTTTG Shew_2310 2708435 - 2708004 - | nucleoside-diphosphate kinase Shew_2311 2708828 - 2708637 - | hypothetical protein TERM 2621 2708887 - 2708925 + r 100 -16.2 -3.2327 | opp_overlap 2708897, overlap 2708897 CTTGGCAGATGCCGG GATCAAAAAAGCCGGTCT GAT AGACCGGCTTTTTTGAGA TTGCTAATACATTAA TERM 2622 2708897 - 2708915 + r 100 -14.6 -5.10029 | opp_overlap 2708897, overlap 2708887 GCCGGGATCAAAAAA GCCGGTCT GAT AGACCGGC TTTTTTGAGATTGCT TERM 2623 2708915 - 2708897 - R 100 -14.6 -5.14563 | opp_overlap 2708887 2708897 GCCGGGATCAAAAAA GCCGGTCT GAT AGACCGGC TTTTTTGAGATTGCT Shew_2312 2709282 - 2708947 - | ferredoxin, 2Fe-2S type, ISC system hscA 2711153 - 2709291 - | chaperone protein HscA TERM 2624 2711212 - 2711174 - R 90 -4.5 -5.53288 | gap 1, overlap 2711178 TCCAACTTAAAAAAA TAAAGGCTCAGTCGACCG CAAT CGA-CGACAGAGCCATAA AAAACATTCGCGCTT TERM 2625 2711208 - 2711178 - R 100 -9.7 -5.21683 | gap 1, overlap 2711174 ACTTAAAAAAATAAA GGCTCAGTCGACCG CAAT CGA-CGACAGAGCC ATAAAAAACATTCGC hscB 2711747 - 2711226 - | co-chaperone HscB Shew_2315 2712086 - 2711763 - | iron-sulfur cluster assembly protein IscA TERM 2626 2711982 - 2711958 - G 77 -10 -3.92373 | GAGTTCATCGACAAA CTCCAGCACG TATGC CATGCCGGAG CAGCCGGACGTCTTC Shew_2316 2712484 - 2712101 - | scaffold protein Shew_2317 2713735 - 2712521 - | cysteine desulfurase IscS Shew_2318 2714274 - 2713813 - | BadM/Rrf2 family transcriptional regulator Shew_2319 2715292 - 2714471 - | serine O-acetyltransferase Shew_2320 2716055 - 2715297 - | RNA methyltransferase TERM 2627 2715356 - 2715387 + g 70 -10.9 -3.29947 | overlap 2715358 CCAATTCAACCTTCT TATCCACCGAGGT CAGGAT ACCTCGGAGGATG TTCATCTCCTGACTC TERM 2628 2715358 - 2715385 + g 71 -11.3 -3.214 | overlap 2715356 AATTCAACCTTCTTA TCCACCGAGGT CAGGAT ACCTCGGAGGA TGTTCATCTCCTGAC TERM 2629 2716170 - 2716158 - H 76 -7.7 -4.24963 | TATAACGATTGAAAA GCGTA TAA TACGC GCCGATTATTTATAT Shew_2321 2716213 - 2717016 + | inositol monophosphatase TERM 2630 2717049 - 2717063 + F 100 -8.5 -5.65177 | opp_overlap 2717049 2717047 ATCGCACGCTAAAGA CCGCC TTCAT GGCGG TTTTTTTATGCCTGT Shew_2322 2717361 - 2718533 + | NnrS family protein Shew_2323 2718642 - 2719046 + | phosphate-starvation-inducible E Shew_2324 2719363 - 2719665 + | type IV pilus assembly PilZ Shew_2325 2719779 - 2720447 + | hypothetical protein Shew_2326 2720434 - 2720778 + | RepA domain-containing protein Shew_2327 2721014 - 2720811 - | hypothetical protein TERM 2631 2721453 - 2721465 + G 74 -4.7 -4.72986 | overlap 2721428 2721454 CGGCCTGTTAGGCGG ACCGG TTA CCGGC TTTTTGGTGGGCCTA Shew_2328 2721211 - 2722908 + | signal transduction histidine kinase, LytS Shew_2329 2722905 - 2723615 + | putative two-component response-regulatory protein YehT Shew_2330 2723735 - 2725171 + | carbon starvation protein CstA TERM 2632 2725225 - 2725196 - T 74 -10.9 -2.74248 | opp_overlap 2725203, overlap 2725203 TAACATCCCCCAAAG TAAAAAACCAGTC GCAA GACTGGTTTTTTT ATGCCGGTTTCTGTG TERM 2633 2725203 - 2725218 + T 100 -9 -5.61596 | opp_overlap 2725203 2725196 CCCCAAAGTAAAAAA CCAGTC GCAA GACTGG TTTTTTTATGCCGGT TERM 2634 2725218 - 2725203 - T 100 -9 -5.37593 | opp_overlap 2725203, overlap 2725196 CCCCAAAGTAAAAAA CCAGTC GCAA GACTGG TTTTTTTATGCCGGT Shew_2331 2725824 - 2725285 - | YaeQ family protein TERM 2635 2725873 - 2725848 - R 80 -7.6 -4.44667 | opp_overlap 2725847 2725846, overlap 2725869 GTCGTTAACAATAAA GCGCCTAGTT TACCCT AATTAGGCGC CCTTTGAGCAAGAGA Shew_2332 2726804 - 2725893 - | siroheme synthase Shew_2333 2727192 - 2726875 - | hypothetical protein TERM 2636 2727333 - 2727318 - R 100 -10.4 -5.45652 | opp_overlap 2727318 ATTGGCAATAAAAAA GCCACG AAAT CGTGGC TTTTTCATAACACTG TERM 2637 2727318 - 2727333 + r 91 -10.4 -4.72986 | opp_overlap 2727318 ATTGGCAATAAAAAA GCCACG AAAT CGTGGC TTTTTCATAACACTG secF 2728312 - 2727365 - | preprotein translocase subunit SecF secD 2730176 - 2728326 - | preprotein translocase subunit SecD Shew_2336 2730491 - 2730216 - | preprotein translocase, YajC subunit tgt 2731700 - 2730576 - | queuine tRNA-ribosyltransferase TERM 2638 2731824 - 2731848 + r 81 -9.4 -4.07885 | gap 1, opp_overlap 2731824 AAATCTCTAAAAAAA TACCCACCTCA AGTG TG-GGTGGGTA TTTTAAAGCAAAATC TERM 2639 2731848 - 2731824 - R 100 -9.4 -5.4477 | gap 1, opp_overlap 2731824 AAATCTCTAAAAAAA TACCCACCTCA AGTG TG-GGTGGGTA TTTTAAAGCAAAATC Shew_2338 2732906 - 2731869 - | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase TERM 2640 2732373 - 2732397 + g 72 -9.9 -3.56593 | overlap 2732392 AAAGTGCAGACCCGC CGTTGGCGCGG CCA CTGCGCCAGGG TTCTGGTTGTAGACT Shew_2339 2733316 - 2733909 + | hypothetical protein Shew_2340 2733979 - 2734476 + | redoxin domain-containing protein Shew_2341 2735907 - 2734555 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 2641 2734733 - 2734718 - G 73 -5.4 -4.66537 | gap 1 TCGGGCAAGACAAAA CGCTTGG TAT CCA-GCG GCTGCGGCGCGGCGC TERM 2642 2734882 - 2734908 + g 74 -10.2 -3.54741 | overlap 2734877 GCTTAGCTTGGGCAC CTCCATGCCA TATTGAT TGGCGTGGAG TTTAAGAAAGTGCTC Shew_2342 2737541 - 2735907 - | integral membrane sensor signal transduction histidine kinase TERM 2643 2737731 - 2737698 - H 74 -10.4 -3.26471 | overlap 2737725 CCATGCCCAGACTAA GCCATGAATTTCCC CAAATC GGGAAATCCATGTC CCATATGGGGGTGAA TERM 2644 2738053 - 2738028 - g 77 -11.9 -3.34104 | CGACAAGGACACTAA GTTGACCCTGG ACCT CCAGGGTAAAC AGCACCACTACAGCT Shew_2343 2737879 - 2738655 + | hypothetical protein Shew_2344 2738752 - 2739087 + | hypothetical protein Shew_2345 2740677 - 2739163 - | binding-protein-dependent transport systems inner membrane component TERM 2645 2740125 - 2740104 - G 71 -11.5 -3.20723 | TGCCGATGAAGCCAA GCACTGCGC TGCT GCGCAGGGC ACACTCGAACCGGTA Shew_2346 2741398 - 2740733 - | ABC transporter-related protein TERM 2646 2741100 - 2741129 + g 72 -9.9 -3.58533 | AGCTTGGCCACCTCT TCACGCCTTGCCG CCAA TGGCCAGGCGAGA TTTAACAGGTTATAG Shew_2347 2742257 - 2741403 - | phosphonate ABC transporter, periplasmic phosphonate-binding protein TERM 2647 2742499 - 2742483 - H 71 -5.1 -4.47183 | GAGCACTTAAATAAA CATAGGC AAA GCATATG AGAATTTTGGTCGTT Shew_2348 2742497 - 2743171 + | two component transcriptional regulator Shew_2349 2743162 - 2744511 + | integral membrane sensor signal transduction histidine kinase Shew_2350 2745203 - 2744508 - | 2OG-Fe(II) oxygenase TERM 2648 2745476 - 2745465 - g 89 -5.8 -5.18357 | opp_overlap 2745463 2745465 GAACTGATTAAAAAA CTCG GTAT CGAG TATGTGTTTGTCGAC Shew_2351 2745324 - 2746589 + | metal dependent phosphohydrolase TERM 2649 2746976 - 2746949 - g 74 -12.9 -2.88544 | opp_overlap 2746954, overlap 2746951 2746954 CCCGACCTTTACACA GATAACAGAGC CAAGGT GCTCTGTTATC CGGGTAAATAACTCA Shew_2352 2746679 - 2746987 + | hypothetical protein Shew_2353 2748009 - 2747062 - | magnesium and cobalt transport protein CorA Shew_2354 2748539 - 2748171 - | hypothetical protein Shew_2355 2748704 - 2749474 + | hypothetical protein Shew_2356 2750600 - 2749563 - | patatin TERM 2650 2751320 - 2751357 + r 88 -10.7 -4.1552 | gap 1, opp_overlap 2751320 2751328, overlap 2751328 TCAAAGGCTGTTAAA CGAAAAAATCCCCAACAC TAG GTGCTGGGGA-TTCTTCG TTTATTAGGCGCCTG TERM 2651 2751357 - 2751320 - R 100 -15.1 -3.56594 | gap 1, opp_overlap 2751320 2751328, overlap 2751328 TCAAAGGCTGTTAAA CGAAAAAATCCCCAACAC TAG GTGCTGGGGATTCTT-CG TTTATTAGGCGCCTG TERM 2652 2751350 - 2751328 - R 100 -14.2 -5.37593 | opp_overlap 2751328 2751320, overlap 2751320 TGTTAAACGAAAAAA TCCCCAACAC TAG GTGCTGGGGA TTCTTCGTTTATTAG TERM 2653 2751328 - 2751350 + r 93 -12 -3.96681 | opp_overlap 2751320 2751328, overlap 2751320 TGTTAAACGAAAAAA TCCCCAACAC TAG GTGCTGGGGA TTCTTCGTTTATTAG TERM 2654 2752832 - 2752843 + r 71 -4.4 -4.7254 | CATCTTGCGATTTTG CACA GTGC TGTG TTTTTGATAAACAGT TERM 2655 2754134 - 2754146 + r 82 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 2656 2754653 - 2754617 - R 73 -10.3 -3.07816 | overlap 2754622 2754625 CGCTTAGTCACTTAA CCATACAACCCAAATGA GTT TCATTTGAGCTGCATCG CAACTAACGGTTTCT TERM 2657 2754648 - 2754622 - R 75 -11 -2.92371 | overlap 2754617 2754625 AGTCACTTAACCATA CAACCCAAATGA GTT TCATTTGAGCTG CATCGCAACTAACGG TERM 2658 2754645 - 2754625 - R 75 -9.1 -3.60661 | overlap 2754622 2754617 CACTTAACCATACAA CCCAAATGA GTT TCATTTGAG CTGCATCGCAACTAA TERM 2659 2754794 - 2754826 + r 75 -10.8 -2.88663 | opp_overlap 2754795, overlap 2754801 GAGCGGGCTTAAAAA AGCCAAAGATAAAT TCTGC ATTTATCTTTGGCA TCTCTAACCATAACT TERM 2660 2754825 - 2754795 - R 100 -14.3 -5.00884 | opp_overlap 2754794 2754801 AGCGGGCTTAAAAAA GCCAAAGATAAAT TCTGC ATTTATCTTTGGC ATCTCTAACCATAAC TERM 2661 2757424 - 2757401 - R 90 -11 -4.40993 | GATAAACGAGCAAAA GGGCGATTCT GACT AGATTCGCCC ATCAAAGGCATATAA Shew_2357 2758098 - 2757544 - | D,D-heptose 1,7-bisphosphate phosphatase TERM 2662 2758967 - 2758992 + G 75 -13.9 -2.59431 | opp_overlap 2758965, overlap 2758964 CTACCCCAACATAGT GGCGGCCGGCG ACAA CGCCTGCTGCC TGCATTATGAAGAGA Shew_2358 2758272 - 2759591 + | peptidase M24 Shew_2359 2760251 - 2759661 - | uracil-DNA glycosylase superfamily protein TERM 2663 2760004 - 2759994 - G 74 -4.6 -4.77165 | overlap 2759996 CCCCGGATAACAAAA CCCC ATG GGGA CTATGGCAAACAAGG Shew_2360 2761753 - 2760413 - | D-amino-acid dehydrogenase TERM 2664 2761294 - 2761261 - G 70 -10.4 -3.29837 | gap 1, overlap 2761256 2761259 GTTCAAACACCAAGA GACTGCCCTCGAGTT TGAGT AACTCG-GAGCAGCC ACACTCGCTCACCAA TERM 2665 2761511 - 2761493 - G 74 -10.2 -3.63694 | overlap 2761495 AGGCAGTTTGAATAA CATGGCCG GGT CGGCCAGG GGAAACATCTGCTCG TERM 2666 2761509 - 2761495 - G 75 -11.4 -3.39784 | overlap 2761493 GCAGTTTGAATAACA TGGCCG GGT CGGCCA GGGGAAACATCTGCT Shew_2361 2762790 - 2761750 - | proline racemase Shew_2362 2762994 - 2763908 + | dihydrodipicolinate synthase TERM 2667 2764055 - 2764036 - g 88 -15 -3.38272 | CACTATGAGCGAGAA GCGCCAGG ATTT CCTGGCGC AGTATGACTGGATCC Shew_2363 2763929 - 2764930 + | proline racemase Shew_2364 2764957 - 2766522 + | aldehyde dehydrogenase TERM 2668 2766561 - 2766536 - f 100 -13.5 -3.8594 | opp_overlap 2766536 2766540, overlap 2766540 AACAGGCATATTAAA TAAAGGGAAAC CACG GTTTCCCTTTA TTTATAGTGCTATAA TERM 2669 2766536 - 2766561 + F 100 -13.5 -4.00782 | opp_overlap 2766536 2766540, overlap 2766540 AACAGGCATATTAAA TAAAGGGAAAC CACG GTTTCCCTTTA TTTATAGTGCTATAA TERM 2670 2766557 - 2766540 - f 89 -9.9 -4.53602 | opp_overlap 2766540 2766536, overlap 2766536 GGCATATTAAATAAA GGGAAAC CACG GTTTCCC TTTATTTATAGTGCT TERM 2671 2766540 - 2766557 + F 91 -9.9 -4.59944 | opp_overlap 2766536 2766540, overlap 2766536 GGCATATTAAATAAA GGGAAAC CACG GTTTCCC TTTATTTATAGTGCT Shew_2365 2766629 - 2767300 + | GntR family transcriptional regulator TERM 2672 2767353 - 2767374 + F 100 -7.3 -5.61881 | opp_overlap 2767353 AGATTAGTTTGATAA GGCAGAG CTGATGTA CTCTGCC TTTTTATTTTTGAGA Shew_2366 2767400 - 2768467 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2673 2768513 - 2768485 - T 100 -13.3 -3.71913 | opp_overlap 2768490, overlap 2768490 GCCAGATTTAAAACA GAAAATGCCGACA TGA TGTCGGCATTTTT TTTTAGCTTAAGACT TERM 2674 2768490 - 2768508 + T 100 -13.2 -6.15259 | opp_overlap 2768485 2768490 ATTTAAAACAGAAAA TGCCGACA TGA TGTCGGCA TTTTTTTTTAGCTTA TERM 2675 2768508 - 2768490 - T 100 -13.2 -4.90471 | opp_overlap 2768490, overlap 2768485 ATTTAAAACAGAAAA TGCCGACA TGA TGTCGGCA TTTTTTTTTAGCTTA Shew_2367 2769160 - 2768570 - | hypothetical protein Shew_2368 2769979 - 2769299 - | exonuclease, RNase T and DNA polymerase III TERM 2676 2769430 - 2769461 + g 74 -12.2 -3.06315 | gap 1, opp_overlap 2769428 CGGGCAGACCATATC GGGCGCGGCTGCGCC CCA GGCGCAGACA-GCCC TCTTGCAGATGTTCC TERM 2677 2769650 - 2769635 - G 78 -4.6 -4.88067 | overlap 2769636 ACTCACGGATAAAAA CCAGGC CATC GCCTGC TCCGGGGTCAAGGCC Shew_2369 2771827 - 2769980 - | cyclic nucleotide-binding protein Shew_2370 2772607 - 2771948 - | methyltransferase type 11 TERM 2678 2772697 - 2772679 - R 100 -16 -5.99154 | TATGAAATAAAAAAA GGGAGCGC ATT GCGCTCCC TAGGCCGATAAGCTT Shew_2371 2774437 - 2772719 - | Na+/solute symporter Shew_2372 2774715 - 2774449 - | hypothetical protein TERM 2679 2774960 - 2774945 - R 100 -11.8 -5.26316 | GGATTGTACAAAAAA GCCGCC AAGC GGCGGC TGATGGGATAGAGAG Shew_2373 2775647 - 2775015 - | DSBA oxidoreductase TERM 2680 2775692 - 2775703 + r 71 -4.4 -4.68511 | overlap 2775683 TTTGCTCCCCAGGCT TAGC TGAG GCTA TTTATTTATCTTGCA Shew_2374 2776784 - 2775885 - | NAD-dependent epimerase/dehydratase TERM 2681 2776004 - 2776031 + g 70 -2.7 -4.74801 | gap 2, overlap 2776003 CCTCGATAAAGCTGG GCGGCG--TGAGC CCCT GCTGAGTCGCCGC TTTTTGATAAAATTC Shew_2375 2778071 - 2776848 - | metal dependent phosphohydrolase TERM 2682 2777183 - 2777163 - G 74 -10.5 -3.58343 | overlap 2777170 CGCATGATTCTTAAA CAGATAACC CAG GGCTATCTG AGGCGAGCGGCTCTC TERM 2683 2778516 - 2778534 + r 100 -14.6 -5.75342 | AAAGAGATATGCTTA GCGCTGCA TCT TGCAGCGC TTTTTTTTGCCCGCG Shew_2376 2779025 - 2778555 - | hypothetical protein TERM 2684 2779138 - 2779119 - R 100 -10 -5.71983 | opp_overlap 2779119 TGAACGATAAAAAAA GCGCCATC TCTC GATGACGC TCTCGTTTAGCTTCA Shew_2377 2781196 - 2779187 - | DNA ligase, NAD-dependent TERM 2685 2781217 - 2781244 + r 72 -9.8 -3.13475 | opp_overlap 2781219 2781221, overlap 2781219 2781221 TTATCCAGTTTAAGC AACAGAGGCCGC TGAT GCGGCCTCTATC TTGAATATCCGATTA TERM 2686 2781219 - 2781242 + r 83 -12.4 -3.12505 | opp_overlap 2781219 2781221, overlap 2781217 2781221 ATCCAGTTTAAGCAA CAGAGGCCGC TGAT GCGGCCTCTA TCTTGAATATCCGAT TERM 2687 2781242 - 2781219 - R 100 -14.6 -3.35992 | opp_overlap 2781219 2781217 2781221, overlap 2781221 ATCCAGTTTAAGCAA CAGAGGCCGC TGAT GCGGCCTCTA TCTTGAATATCCGAT TERM 2688 2781221 - 2781240 + r 89 -15 -3.12142 | opp_overlap 2781219 2781221, overlap 2781219 2781217 CCAGTTTAAGCAACA GAGGCCGC TGAT GCGGCCTC TATCTTGAATATCCG TERM 2689 2781240 - 2781221 - R 95 -15 -3.24825 | opp_overlap 2781221 2781219 2781217, overlap 2781219 CCAGTTTAAGCAACA GAGGCCGC TGAT GCGGCCTC TATCTTGAATATCCG Shew_2378 2782271 - 2781264 - | cell division protein ZipA Shew_2379 2785720 - 2782295 - | chromosome segregation protein SMC TERM 2690 2783105 - 2783119 + g 72 -3.6 -4.72696 | TTGAGTCAAGTGCTC TAACTT GCC AAGTTG TTGTTTTTGTTTGGC TERM 2691 2784872 - 2784892 + g 77 -10.5 -3.84825 | TTGCTGCTCCTGGCG CTCAAGCTC ATC GAGTTTGAG TTTAATCTCGGTCAA TERM 2692 2785934 - 2785921 - g 72 -2.3 -4.90869 | ACTATGAATCAAAAA GCAAG CAAG CCCGC TAAGAGTGGCGTGAA Shew_2380 2785909 - 2786682 + | putative sulfate transport protein CysZ TERM 2693 2786724 - 2786697 - T 100 -12.8 -4.14511 | opp_overlap 2786702, overlap 2786702 AAGCTCACTTCAAAA GAAAAGGCCTGC AGTT GCAGGCCTTTTT ATTACGAATCAGGCG TERM 2694 2786719 - 2786702 - T 100 -12.7 -5.09259 | opp_overlap 2786702, overlap 2786697 CACTTCAAAAGAAAA GGCCTGC AGTT GCAGGCC TTTTTATTACGAATC TERM 2695 2786702 - 2786719 + T 100 -12.7 -5.07486 | opp_overlap 2786702 2786697 CACTTCAAAAGAAAA GGCCTGC AGTT GCAGGCC TTTTTATTACGAATC Shew_2381 2787977 - 2786733 - | RDD domain-containing protein TERM 2696 2787321 - 2787341 + g 78 -6.1 -4.7497 | overlap 2787324 AGGGTAAGCCTGCTT TAGGCGCTG CAT CAGTGCTTG TTTTTCCTGACTCGG TERM 2697 2787324 - 2787338 + g 77 -7.8 -4.4831 | overlap 2787321 GTAAGCCTGCTTTAG GCGCTG CAT CAGTGC TTGTTTTTCCTGACT TERM 2698 2787740 - 2787726 - G 70 -5.6 -4.36554 | GACCAGGAGAATAAA CAGGGC GCC GGCCTG CTCAGCTAATACGCT Shew_2382 2788241 - 2789209 + | cysteine synthase A TERM 2699 2789244 - 2789270 + T 100 -16 -4.77173 | GTTAGCTAACTTGAG GCCCCGATAGTT TTA AACTATTGGGGC TTTATTTTATGGCGC Shew_2383 2789928 - 2789272 - | TetR family transcriptional regulator Shew_2384 2790184 - 2791251 + | O-methyltransferase family protein TERM 2700 2791979 - 2791990 + F 93 -3 -5.80003 | TTAACACCCATCTTG CAAT GTTA ATTG TTTTTTCTTTGTTAA Shew_2385 2792231 - 2794918 + | TonB-dependent receptor, plug TERM 2701 2794960 - 2794943 - T 100 -11.3 -5.27477 | opp_overlap 2794943 ACTTTAATGAAAAAA CGGCATC CTAG GATGCCG TTTTTTATTGCCAAA TERM 2702 2794943 - 2794960 + T 100 -11.3 -5.4505 | opp_overlap 2794943 ACTTTAATGAAAAAA CGGCATC CTAG GATGCCG TTTTTTATTGCCAAA Shew_2386 2796520 - 2794991 - | hypothetical protein TERM 2703 2796804 - 2796821 + H 74 -2.1 -5.20331 | gap 1, opp_overlap 2796806, overlap 2796804 2796806 TCAATATCACACAAG C-ATCAAT TTT ATTGATAG TTTTCTTTATTGTTT Shew_2387 2796863 - 2797777 + | LysR family transcriptional regulator TERM 2704 2797852 - 2797899 + T 100 -20.2 -2.74192 | opp_overlap 2797860 2797869, overlap 2797860 2797869 AATTCGGCTAGCTGT TCGGTAAACATTAAAAAGGGGC ATTC GCCCCTTTTTAATGTTTACAGC TGGTCTTGGACACTA TERM 2705 2797860 - 2797891 + T 100 -19 -3.59087 | opp_overlap 2797860 2797869, overlap 2797852 2797869 TAGCTGTTCGGTAAA CATTAAAAAGGGGC ATTC GCCCCTTTTTAATG TTTACAGCTGGTCTT TERM 2706 2797891 - 2797860 - T 100 -19 -3.53224 | opp_overlap 2797860 2797852 2797869, overlap 2797869 TAGCTGTTCGGTAAA CATTAAAAAGGGGC ATTC GCCCCTTTTTAATG TTTACAGCTGGTCTT TERM 2707 2797869 - 2797882 + T 93 -9.5 -4.93696 | opp_overlap 2797869 2797860, overlap 2797860 2797852 GGTAAACATTAAAAA GGGGC ATTC GCCCC TTTTTAATGTTTACA TERM 2708 2797882 - 2797869 - T 93 -9.5 -4.93696 | opp_overlap 2797860 2797852 2797869, overlap 2797860 GGTAAACATTAAAAA GGGGC ATTC GCCCC TTTTTAATGTTTACA Shew_2388 2799438 - 2797912 - | formate/nitrite transporter Shew_2389 2800399 - 2801931 + | hypothetical protein TERM 2709 2801947 - 2801970 + F 100 -11 -4.9792 | opp_overlap 2801947 2801948, overlap 2801948 TCGCGCAAACGACAA CGAAGAGGGC TTAG GCCCTCTTCA TTTTTATCTCCCCTA TERM 2710 2801970 - 2801947 - f 100 -13.2 -3.60151 | opp_overlap 2801947 2801948, overlap 2801948 TCGCGCAAACGACAA CGAAGAGGGC TTAG GCCCTCTTCA TTTTTATCTCCCCTA TERM 2711 2801948 - 2801969 + F 100 -14.5 -3.58029 | opp_overlap 2801947 2801948, overlap 2801947 CGCGCAAACGACAAC GAAGAGGGC TTAG GCCCTCTTC ATTTTTATCTCCCCT TERM 2712 2801969 - 2801948 - f 87 -14.5 -2.75769 | opp_overlap 2801948 2801947, overlap 2801947 CGCGCAAACGACAAC GAAGAGGGC TTAG GCCCTCTTC ATTTTTATCTCCCCT TERM 2713 2802034 - 2802022 - f 70 -9.1 -3.17206 | overlap 2802012 2802020 TAACAGGCATCAATA TGCCC TAT GGGCA TGGTGCTCATAACGC TERM 2714 2804161 - 2804151 - g 77 -8.2 -4.25848 | opp_overlap 2804151 2804148 2804155 AATTCGTGACGAAAA CGGC ATC GCCG TCGATTTCGACATCG Shew_2390 2802496 - 2804778 + | formate acetyltransferase TERM 2715 2804827 - 2804855 + F 72 -10.4 -2.95941 | opp_overlap 2804825 2804826 2804829, overlap 2804826 2804829 TTGGTGAATATAAGC TAGGCTGTGC ACTAATTTA GCACAGCCTA CTTTAATTGAAGTTT TERM 2716 2805037 - 2805075 + G 74 -6.8 -4.4009 | gap 1, opp_overlap 2805037 TGGACATGAAATCGA GGTCGACGTGCTGATGG AACAGA TCATCAGC-TATCGACC TTTTCTCGAGTCCAG pflA 2804882 - 2805622 + | pyruvate formate lyase-activating enzyme 1 Shew_2392 2806072 - 2805629 - | hypothetical protein Shew_2393 2806268 - 2807464 + | acetate kinase TERM 2717 2807547 - 2807522 - f 71 -8.9 -3.33737 | overlap 2807524 CACCAATTTTGACAA GACCCGGCC GTATGTCT GGCCGGGGC ATAAGAGGTAACTAT TERM 2718 2807545 - 2807524 - f 74 -10.1 -3.23447 | overlap 2807522 CCAATTTTGACAAGA CCCGGCC GTATGTCT GGCCGGG GCATAAGAGGTAACT TERM 2719 2809054 - 2809036 - g 79 -11.8 -3.66784 | GCAGCTGGAAGATAA CATGGTAC TGG GTACCATG ATGCTGGCACAGGGT Shew_2394 2807561 - 2809699 + | phosphate acetyltransferase TERM 2720 2809743 - 2809726 - f 100 -11.3 -4.76312 | opp_overlap 2809726 CATAAGATCGAAAAA GCCTGTC ACAA GACAGGC TTTTTTTATACTCAA TERM 2721 2809726 - 2809743 + F 100 -11.3 -5.67063 | opp_overlap 2809726 CATAAGATCGAAAAA GCCTGTC ACAA GACAGGC TTTTTTTATACTCAA Shew_2395 2810027 - 2810458 + | hypothetical protein TERM 2722 2810657 - 2810676 + F 100 -13.6 -4.12532 | opp_overlap 2810657 CACAACCACAAAAAA GAGCAGCC CTAG GGCTGCTC TTTCTGTCTGAAGAC TERM 2723 2810676 - 2810657 - f 100 -13.6 -5.39755 | opp_overlap 2810657 CACAACCACAAAAAA GAGCAGCC CTAG GGCTGCTC TTTCTGTCTGAAGAC TERM 2724 2811050 - 2811062 + F 93 -4.9 -5.55664 | ATTCAATGAACAGGG TGAAA GTC TTTCA TTTTTTTACTGCTGC TERM 2725 2811363 - 2811338 - g 100 -9.7 -5.14563 | TTCGGCATTAAAAAA CCTGGACCACC AACA GATAGCCCAGG TCATCGAATCTCACG Shew_2396 2811189 - 2811413 + | hypothetical protein Shew_2397 2812434 - 2811517 - | hypothetical protein Shew_2398 2813667 - 2812498 - | hypothetical protein folX 2813743 - 2814108 + | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase Shew_2400 2814205 - 2815134 + | hypothetical protein TERM 2726 2815249 - 2815225 - T 77 -11.4 -2.73542 | opp_overlap 2815225 2815219 TTGAACTTTGAACTA GCGGCGCG CTAACCACT CGCGCCGC TCTGCTCTTTTACTT TERM 2727 2815225 - 2815249 + T 79 -11.4 -3.03459 | opp_overlap 2815225, overlap 2815219 TTGAACTTTGAACTA GCGGCGCG CTAACCACT CGCGCCGC TCTGCTCTTTTACTT Shew_2401 2817719 - 2815269 - | hypothetical protein TERM 2728 2817228 - 2817216 - G 77 -10.5 -3.79668 | overlap 2817207 AGCGAAGGGATTAAA GCCCG CAT CGGGC AGCCTGGCTATCTCG Shew_2402 2818459 - 2817719 - | ABC transporter-related protein Shew_2403 2818494 - 2819087 + | arylesterase TERM 2729 2820377 - 2820337 - g 72 -2.6 -4.87803 | gap 1, overlap 2820370 2820371 CATCGCCAAAGAAAA CGTCGCCGGTATCGAGATT GAAA ACTCTAAATAC-GCCGACG TCTACGACAACGAAG Shew_2404 2819657 - 2822308 + | hypothetical protein TERM 2730 2822320 - 2822339 + F 100 -16.4 -4.82901 | opp_overlap 2822320 ATAATCCCAATCCAA GGGCCGCC ATCT GGCGGCCC TTTTTCTCACGAGCC TERM 2731 2822339 - 2822320 - f 100 -16.4 -3.19513 | opp_overlap 2822320 ATAATCCCAATCCAA GGGCCGCC ATCT GGCGGCCC TTTTTCTCACGAGCC Shew_2405 2822361 - 2823596 + | hypothetical protein TERM 2732 2823609 - 2823637 + T 72 -8.8 -3.59262 | opp_overlap 2823611, overlap 2823611 TAGATCTTGCGAATA AACTGGCCTGGC GGCAA GCCAAGCCAGTG TTTGAAGCTCTGACG TERM 2733 2823635 - 2823611 - T 100 -13.6 -4.1552 | opp_overlap 2823611 2823609 GATCTTGCGAATAAA CTGGCCTGGC GGCAA GCCAAGCCAG TGTTTGAAGCTCTGA TERM 2734 2823611 - 2823635 + T 83 -11.4 -3.37487 | opp_overlap 2823611, overlap 2823609 GATCTTGCGAATAAA CTGGCCTGGC GGCAA GCCAAGCCAG TGTTTGAAGCTCTGA Shew_2406 2824606 - 2823593 - | AraC family transcriptional regulator TERM 2735 2824725 - 2824697 - R 89 -14.7 -2.75876 | opp_overlap 2824704, overlap 2824687 2824704 AAAAGTTACAAATAT GTAAAAACCCGCC GAG GGCGGGTTTTTAT CCGGTGAAAGTCGCA TERM 2736 2824704 - 2824718 + r 100 -12.8 -4.85599 | opp_overlap 2824704 2824697 ACAAATATGTAAAAA CCCGCC GAG GGCGGG TTTTTATCCGGTGAA TERM 2737 2824718 - 2824704 - R 100 -12.8 -4.7889 | opp_overlap 2824704, overlap 2824697 ACAAATATGTAAAAA CCCGCC GAG GGCGGG TTTTTATCCGGTGAA Shew_2407 2825776 - 2824745 - | putative periplasmic protease TERM 2738 2825495 - 2825483 - G 74 -7.7 -4.33248 | opp_overlap 2825486, overlap 2825485 GAAGTCGATAACAAA TACGC GAG GCGTA GGCGCGGCTTCGCCA TERM 2739 2825732 - 2825699 - G 70 -10.3 -3.21747 | opp_overlap 2825718, overlap 2825707 2825718 CGATGCCAGCACCAA CACCACAACGGCGAC GATA GCCACCACTATGGTG ACGGCTTTTGCCAGA TERM 2740 2825855 - 2825881 + r 100 -12.4 -3.96337 | opp_overlap 2825861, overlap 2825861 ACAAATCCAGCCATA AAAAAACCCAGC CAG GCTGGGTTTTTA TTTAGTCCTTTTTGG TERM 2741 2825861 - 2825875 + r 100 -11.4 -5.34309 | opp_overlap 2825861, overlap 2825855 CCAGCCATAAAAAAA CCCAGC CAG GCTGGG TTTTTATTTAGTCCT TERM 2742 2825875 - 2825861 - R 100 -11.4 -5.64274 | opp_overlap 2825861 2825855 CCAGCCATAAAAAAA CCCAGC CAG GCTGGG TTTTTATTTAGTCCT Shew_2408 2828391 - 2825905 - | hypothetical protein TERM 2743 2827115 - 2827087 - G 79 -9.5 -4.13014 | opp_overlap 2827090 CTGAGAGGCGTAAAA CTGCGCCAGACGC TCG GCGTTTGGCATAG AGATCAACACTGGAA Shew_2409 2828652 - 2829389 + | short chain dehydrogenase TERM 2744 2829451 - 2829484 + T 73 -4.5 -4.87665 | opp_overlap 2829457, overlap 2829457 TTAAGCCTCAGTCAT CAAAAACACGCCCGT ATTT ATGGGCGTGTTTCAC TTTTTATCAGTAAGA TERM 2745 2829457 - 2829478 + T 100 -12.3 -4.03085 | opp_overlap 2829457, overlap 2829451 CTCAGTCATCAAAAA CACGCCCGT ATTT ATGGGCGTG TTTCACTTTTTATCA TERM 2746 2829478 - 2829457 - T 91 -10.1 -4.7497 | opp_overlap 2829451 2829457 CTCAGTCATCAAAAA CACGCCCGT ATTT ATGGGCGTG TTTCACTTTTTATCA TERM 2747 2829551 - 2829520 - T 86 -13.2 -2.96979 | opp_overlap 2829527, overlap 2829527 AGCAGAAGCTAGACA CAAAAAAGGGAAGC ATCT GCTTCCCTTTTCTA ATGACTGTCAAAACA TERM 2748 2829527 - 2829544 + T 100 -11.3 -4.48072 | opp_overlap 2829520 2829527 GCTAGACACAAAAAA GGGAAGC ATCT GCTTCCC TTTTCTAATGACTGT TERM 2749 2829544 - 2829527 - T 100 -11.3 -5.4251 | opp_overlap 2829527, overlap 2829520 GCTAGACACAAAAAA GGGAAGC ATCT GCTTCCC TTTTCTAATGACTGT Shew_2410 2830787 - 2829576 - | beta-ketoacyl synthase TERM 2750 2830604 - 2830591 - G 70 -5.3 -4.43844 | GCATCACCCATAAAA CGTAA TGCT TTACG GTCGATATGTTCTTT TERM 2751 2832039 - 2832024 - g 74 -10.4 -3.55453 | CACTAAGATAATCAA CGCCCA GCCC TGGGCG GAATCTATCGCTCGC TERM 2752 2832432 - 2832401 - g 73 -8.8 -3.91144 | gap 1, opp_overlap 2832406 GCCATATTCCAGAAA GAGCGCCA-CTTAAG GAT CTTAAGACGGTGCTC TGCGCCCACGGCTAC Shew_2411 2830891 - 2832951 + | FAD dependent oxidoreductase Shew_2412 2833558 - 2833034 - | tRNA/rRNA methyltransferase (SpoU) TERM 2753 2833501 - 2833475 - G 78 -13.6 -3.21395 | opp_overlap 2833464 2833463, overlap 2833473 ATCGGCGCGATAACA GCCGGCGGCGCG CAT CACGCCGCCCAC GTTCGTCGGGCTCTT Shew_2413 2833842 - 2833561 - | hypothetical protein Shew_2414 2835031 - 2833865 - | ATP-NAD/AcoX kinase Shew_2415 2836260 - 2835052 - | major facilitator transporter TERM 2754 2835567 - 2835550 - G 82 -2.6 -5.35459 | ATACAGCACAAAAAA GCCGTA GAAAGG TCCGGC GCTCATCTGCAATAA TERM 2755 2836406 - 2836427 + r 72 -8.7 -3.69283 | opp_overlap 2836406, overlap 2836409 ATGGCTCCCATAAAA GAAGGCACA TTTC TGTGCCCTC TTATTCGCTCAATTG TERM 2756 2836427 - 2836406 - R 90 -10.9 -4.37092 | opp_overlap 2836406 2836409 ATGGCTCCCATAAAA GAAGGCACA TTTC TGTGCCCTC TTATTCGCTCAATTG Shew_2416 2837541 - 2836447 - | chorismate synthase TERM 2757 2837635 - 2837613 - R 89 -12.1 -3.59262 | GGCTATATTCCTAAA TCGGCTTAG TCATT CTAAGCCGA CAAAACATTGGCCAA Shew_2417 2838617 - 2837673 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase Shew_2418 2838697 - 2839224 + | hypothetical protein TERM 2758 2839323 - 2839348 + T 82 -10.5 -4.08974 | opp_overlap 2839328, overlap 2839328 ATTTCTGTAGAGATC AAAAAGGACGC CGAG GCGTCCTTTTG TTTATGTGGTCAACT TERM 2759 2839343 - 2839328 - T 91 -10.4 -4.84527 | opp_overlap 2839323 2839328 TGTAGAGATCAAAAA GGACGC CGAG GCGTCC TTTTGTTTATGTGGT TERM 2760 2839328 - 2839343 + T 93 -10.4 -5.06016 | opp_overlap 2839328, overlap 2839323 TGTAGAGATCAAAAA GGACGC CGAG GCGTCC TTTTGTTTATGTGGT Shew_2419 2839868 - 2839398 - | phosphohistidine phosphatase, SixA TERM 2761 2839651 - 2839673 + g 72 -12.8 -2.53409 | opp_overlap 2839649 2839646, overlap 2839650 2839653 TCGTCTAATACCAGC CACTTTCTCG GTT CGGGAAAGTG CTTACTCACTTCCTG TERM 2762 2841404 - 2841394 - g 71 -6.8 -4.19483 | TTAGACACAGAGAAA CAGG CCT CCTG GTATCACTCACCCTA Shew_2420 2840092 - 2842869 + | peptidase M16 domain-containing protein TERM 2763 2843205 - 2843223 + F 76 -3.8 -5.16237 | TTACCCCAACGCCAG GACACTGA TTG TTAGCGTC TTTTTTGCTCCAATT TERM 2764 2846519 - 2846535 + G 71 -6.6 -4.19953 | opp_overlap 2846518 2846519 GGTGAAGAAAGATAC CCATCA CACCC TGATGG TTTTGGACTTAGATA Shew_2421 2843433 - 2847746 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Shew_2422 2847897 - 2848532 + | hypothetical protein Shew_2423 2848551 - 2848670 + | hypothetical protein TERM 2765 2848728 - 2848711 - T 91 -6.3 -5.4492 | gap 1, opp_overlap 2848711, overlap 2848700 CAGACACATAAAAAA GGAGCTCT AAC AG-GCTCC TTTTTTTATCTGACT TERM 2766 2848711 - 2848728 + T 100 -6.3 -5.72616 | gap 1, opp_overlap 2848700 2848711 CAGACACATAAAAAA GGAGCTCT AAC AG-GCTCC TTTTTTTATCTGACT Shew_2424 2849170 - 2848964 - | hypothetical protein TERM 2767 2849290 - 2849309 + r 75 -9.3 -3.7104 | opp_overlap 2849290 CTCAGGCAAAAAAAA TGCGGCA TTATGT TGCCGCA TTGTTAAATGTGAAT TERM 2768 2849309 - 2849290 - R 100 -9.3 -5.81412 | opp_overlap 2849290 CTCAGGCAAAAAAAA TGCGGCA TTATGT TGCCGCA TTGTTAAATGTGAAT fadJ 2851449 - 2849329 - | multifunctional fatty acid oxidation complex subunit alpha fadI 2852764 - 2851454 - | 3-ketoacyl-CoA thiolase TERM 2769 2851522 - 2851534 + g 74 -10.5 -3.59979 | TTGCCAGGCCGGTAC CGCCG CCA CGGCG TTTCAGCTCGCGACA Shew_2427 2853173 - 2854129 + | ATPase TERM 2770 2854231 - 2854203 - g 81 -10.4 -4.08767 | gap 2 GTTAGCCTGCCAAAA TCTTGC-C-CGGGC CCT GCCCGAGCGCAAGA GCAAGGCGCGCGCGG Shew_2428 2854129 - 2855058 + | hypothetical protein Shew_2429 2855059 - 2855553 + | hypothetical protein Shew_2430 2855541 - 2856560 + | von Willebrand factor, type A TERM 2771 2858611 - 2858594 - g 89 -8.3 -4.87626 | CTGGAATATCAAAAA CGCCGCC GTCA GGGGGCG ACCATAAAGGACAAT Shew_2431 2856557 - 2858638 + | TPR repeat-containing protein TERM 2772 2859016 - 2858982 - g 87 -16.4 -2.90763 | TTCAGAGCCCATAGA GCTCAAGGTGGCCGCC CCC GGCAGCCAACCCGAGC AGATGAAGAATCTGT TERM 2773 2860236 - 2860222 - g 71 -7.8 -4.14615 | AAAAATGCCCCAAAA GCTGCG CCC CACAGC ACACAATCTGCTTTA Shew_2432 2858632 - 2860272 + | hypothetical protein TERM 2774 2860396 - 2860384 - g 100 -4.8 -5.69793 | ATACGAAATAAAAAA CCGA AAAAG TCGG TCAATAGAGACATGC Shew_2433 2860357 - 2860920 + | RNA polymerase sigma factor TERM 2775 2861062 - 2861045 - g 77 -7.7 -4.41114 | overlap 2861038 CTATTAGACAAGAAA CTCGAGG CCGC CCTCAAG ATAGAGGTGCCTGAG Shew_2434 2860913 - 2861617 + | hypothetical protein TERM 2776 2861702 - 2861678 - f 72 -9.9 -3.13788 | opp_overlap 2861682, overlap 2861676 2861674 AGGTAAGCTAATACA GGGAGTCGACC ACA GGTTGGCTCCC TTGCACTTGCACTTG Shew_2435 2862004 - 2863455 + | sodium/proline symporter TERM 2777 2863528 - 2863497 - f 81 -11.8 -3.09131 | opp_overlap 2863505, overlap 2863505 AAAATGAGCGGAAGA TCAAAAAAGCGTAC AAGT GTACGCTTTTTTTA TACCGCATAAATTTT TERM 2778 2863505 - 2863520 + F 100 -9 -5.60993 | opp_overlap 2863505 2863497 CGGAAGATCAAAAAA GCGTAC AAGT GTACGC TTTTTTTATACCGCA TERM 2779 2863520 - 2863505 - f 100 -9 -5.27779 | opp_overlap 2863505, overlap 2863497 CGGAAGATCAAAAAA GCGTAC AAGT GTACGC TTTTTTTATACCGCA TERM 2780 2863789 - 2863762 - f 71 -4.8 -4.54821 | gap 1, overlap 2863766 ACGGGAATTATAAAA TGGACCTG-GCCG CCA CGACTCAGGCACA AGCATGAGCACAATA Shew_2436 2863837 - 2865153 + | membrane protein involved in aromatic hydrocarbon degradation TERM 2781 2865167 - 2865203 + F 95 -13.2 -3.2964 | gap 1, opp_overlap 2865176, overlap 2865169 2865176 AACTTGTACTACAGC CTCCAAAAA-GCCGCAG CCTA CTGCGGCTTTTTTGTAG TTATCGGAAAACTTT TERM 2782 2865169 - 2865200 + F 100 -16 -2.82623 | opp_overlap 2865176, overlap 2865167 2865176 CTTGTACTACAGCCT CCAAAAAGCCGCAG CCTA CTGCGGCTTTTTTG TAGTTATCGGAAAAC TERM 2783 2865193 - 2865176 - f 100 -12.7 -4.59109 | opp_overlap 2865169 2865167 2865176 TACAGCCTCCAAAAA GCCGCAG CCTA CTGCGGC TTTTTTGTAGTTATC TERM 2784 2865176 - 2865193 + F 100 -12.7 -5.39755 | opp_overlap 2865176, overlap 2865169 2865167 TACAGCCTCCAAAAA GCCGCAG CCTA CTGCGGC TTTTTTGTAGTTATC Shew_2437 2865259 - 2865645 + | hypothetical protein TERM 2785 2866411 - 2866389 - g 90 -12 -4.2704 | opp_overlap 2866389 2866388 2866386 CCGAGTATCAAGAAA GTCAGGGTGG TTT CGACCCTGAC CTATTACTTAAACGA TERM 2786 2866389 - 2866411 + G 70 -12 -2.54098 | opp_overlap 2866389, overlap 2866388 2866386 CCGAGTATCAAGAAA GTCAGGGTGG TTT CGACCCTGAC CTATTACTTAAACGA Shew_2438 2865720 - 2866430 + | hypothetical protein TERM 2787 2866458 - 2866438 - f 75 -9 -3.58522 | opp_overlap 2866438 2866433 ACGATTAGTTTTAAA GGGGCAAA GGATT TTCGCCCC TTCAATCGTATTTTT Shew_2439 2866545 - 2867561 + | RND family efflux transporter MFP subunit Shew_2440 2867592 - 2870846 + | acriflavin resistance protein Shew_2441 2870858 - 2871070 + | hypothetical protein Shew_2442 2871094 - 2871477 + | rhodanese domain-containing protein TERM 2788 2871498 - 2871486 - f 77 -4.8 -4.93296 | GCACTAGGATAAAAA GAGC TTAAC GCTC AGACATCCTTAAACC TERM 2789 2871520 - 2871535 + F 93 -10.4 -4.88407 | opp_overlap 2871520 2871512 CCTTAAACCGACTAA GGCACC CCAG GGTGCC TTTTTCATTGGCTGC TERM 2790 2871535 - 2871520 - f 74 -10.4 -3.25088 | opp_overlap 2871520, overlap 2871512 CCTTAAACCGACTAA GGCACC CCAG GGTGCC TTTTTCATTGGCTGC TERM 2791 2872954 - 2872944 - g 75 -2.4 -5.05601 | CACCACAGAGAAAAA CGCC CTA GCCG CTCACGCCAACAACG Shew_2443 2872114 - 2874537 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 2792 2874571 - 2874554 - f 82 -12.7 -2.92463 | opp_overlap 2874554 CGCATCATCTAGACA GGGGACC TCAG GGTCCCC TTTTTTATCGAAAAC TERM 2793 2874554 - 2874571 + F 100 -12.7 -5.24129 | opp_overlap 2874554 CGCATCATCTAGACA GGGGACC TCAG GGTCCCC TTTTTTATCGAAAAC Shew_2444 2874607 - 2874987 + | hypothetical protein Shew_2445 2875132 - 2875608 + | hypothetical protein Shew_2446 2876352 - 2875735 - | GTP cyclohydrolase II Shew_2447 2876943 - 2876587 - | hypothetical protein nrdG 2877575 - 2877102 - | anaerobic ribonucleotide reductase-activating protein TERM 2794 2877525 - 2877513 - G 75 -9.1 -4.04206 | opp_overlap 2877521 GCAGCCCGAGACAAA CAGGG TCG CCCTG GTGCCGGGTCCATTG Shew_2449 2879814 - 2877697 - | anaerobic ribonucleoside triphosphate reductase Shew_2450 2880802 - 2880065 - | hypothetical protein TERM 2795 2880874 - 2880852 - R 71 -4 -4.81083 | overlap 2880853 2880855 TGCAAGTAGCAAAAA CCAGGCCAGA GCT CCTAGCCAGA GCTCCTAAAGAGACA Shew_2451 2882064 - 2881033 - | patatin Shew_2452 2882168 - 2883550 + | DEAD/DEAH box helicase domain-containing protein TERM 2796 2883604 - 2883632 + F 87 -8.2 -5.06816 | gap 1 CTTAGCGGGCACTTA GCGGTCACTTAGT ATTC ACTGAG-GGCCGC TTTTTATTGCCCGCT TERM 2797 2884199 - 2884213 + G 70 -10 -3.53811 | GCAGCTCAAGCGCAA TCCACC TAT GGTGGA TTTCGAAGGACTGGA Shew_2453 2883867 - 2884307 + | hypothetical protein TERM 2798 2884314 - 2884336 + F 100 -14.1 -3.56161 | opp_overlap 2884308 2884309 2884302, overlap 2884315 AAAGATTAAGCCTAT TGCCGGGCG CATCC CGCCCGGCG TTATCTAATCGCTTC TERM 2799 2884315 - 2884335 + F 93 -15.4 -2.73214 | opp_overlap 2884308 2884309 2884302, overlap 2884314 AAGATTAAGCCTATT GCCGGGCG CATCC CGCCCGGC GTTATCTAATCGCTT Shew_2454 2884383 - 2884889 + | hypothetical protein TERM 2800 2884924 - 2884893 - T 82 -12.6 -2.77994 | gap 1, opp_overlap 2884894 2884900, overlap 2884900 GAGAAAGGCTAAGCA TA-AAAAACGCCACA TCA TGTGGCGTTTTTCTA TTCGATAAGCAGTTA TERM 2801 2884894 - 2884922 + T 86 -13.3 -3.08798 | opp_overlap 2884893 2884900, overlap 2884900 AGAAAGGCTAAGCAT AAAAAACGCCACA TCA TGTGGCGTTTTTC TATTCGATAAGCAGT TERM 2802 2884916 - 2884900 - T 100 -12.3 -5.37345 | opp_overlap 2884894 2884900, overlap 2884893 GCTAAGCATAAAAAA CGCCACA TCA TGTGGCG TTTTTCTATTCGATA TERM 2803 2884900 - 2884916 + T 100 -12.3 -5.10767 | opp_overlap 2884900 2884893, overlap 2884894 GCTAAGCATAAAAAA CGCCACA TCA TGTGGCG TTTTTCTATTCGATA Shew_2455 2886220 - 2884964 - | peptidase M23B TERM 2804 2886313 - 2886297 - R 80 -8.7 -4.17657 | CATTAGACCCCAAAA CCCCATA AAA CATGGGG TCGATGCCAAGTTAT TERM 2805 2886459 - 2886416 - R 100 -5.5 -5.82281 | gap 1, opp_overlap 2886422 2886423, overlap 2886417 2886423 AAACAGACAAAAAAA CTAAAAAGGTGCTGAAAATC CCACT GATA-TCAGCACCCTTTCAA TCCAGGTTAAGGTAA TERM 2806 2886458 - 2886417 - R 70 -6.8 -4.05708 | gap 1, opp_overlap 2886422 2886423, overlap 2886416 2886423 AACAGACAAAAAAAC TAAAAAGGTGCTGAAAATC CCACT GATA-TCAGCACCCTTTCA ATCCAGGTTAAGGTA TERM 2807 2886452 - 2886423 - R 83 -5.8 -5.31158 | gap 1, opp_overlap 2886422 2886423, overlap 2886417 2886416 CAAAAAAACTAAAAA GGTGCTGAAAATC CCACT GATA-TCAGCACC CTTTCAATCCAGGTT Shew_2456 2889522 - 2886466 - | SMC domain-containing protein Shew_2457 2890661 - 2889519 - | nuclease SbcCD, D subunit TERM 2808 2890779 - 2890764 - R 77 -10.4 -3.53761 | opp_overlap 2890768 CAAGGCTTTGTGAAA GCGGCT TAGC AGCCGC TCAGTATTAGAGCAA TERM 2809 2890849 - 2890870 + r 71 -7.9 -3.76232 | opp_overlap 2890849 CTTCTAATTAAAAAA GACCCACCT TAAC GGGTGGGCC TTCTCTATTTAACAA TERM 2810 2890870 - 2890849 - R 100 -9.4 -5.26875 | opp_overlap 2890849 CTTCTAATTAAAAAA GACCCACC TTAACG GGTGGGCC TTCTCTATTTAACAA Shew_2458 2891761 - 2890901 - | glutathione S-transferase domain-containing protein Shew_2459 2892352 - 2892005 - | hypothetical protein Shew_2460 2893502 - 2892459 - | hypothetical protein TERM 2811 2893523 - 2893539 + r 86 -10.9 -3.95725 | CCCGGCTCCAATTTT TTCGAGC AAA GCTCGAA TTCTTGTTCCGGCTT Shew_2461 2895931 - 2893613 - | MORN repeat-containing protein TERM 2812 2893765 - 2893739 - G 78 -13.1 -3.29144 | gap 1, opp_overlap 2893763, overlap 2893763 GTAGGCGCGCCACAA GCCTTCCTTGCG AGAG CGCA-GGAAGGC CCCCTGCTCGGCCTG Shew_2462 2897870 - 2896062 - | MORN repeat-containing protein Shew_2463 2900201 - 2897880 - | hypothetical protein TERM 2813 2897969 - 2897942 - G 72 -9.9 -3.6502 | gap 1, overlap 2897947 CATCGCCGATGGAAA GATAG-GCGGCG CTGCT CGCCGCGCCATC GACGCTAAGAAATCG TERM 2814 2898735 - 2898705 - G 79 -4.1 -5.0133 | gap 2, opp_overlap 2898714 2898716, overlap 2898707 2898708 CAGCTCGCGAAAAAA GAGCTCATCGAGCAA CAG TTGCTC--TGTGCTC GTCAGCCACTTAGGC Shew_2464 2901133 - 2900369 - | hypothetical protein TERM 2815 2900966 - 2900955 - G 82 -2.2 -5.4477 | opp_overlap 2900960 2900964 AAACTGGCAAAAAAA CTGC CGCC ACAG GCCTGTAGCTTGTTG TERM 2816 2901448 - 2901423 - g 72 -9.7 -3.57406 | opp_overlap 2901423 2901430, overlap 2901421 CCGCCAGCATAAACA GCTCAGCCTCA CGCC TGAGGGCGAGC GTTATCTGCGCCATA Shew_2465 2901238 - 2902167 + | LysR family transcriptional regulator Shew_2466 2904141 - 2902171 - | hypothetical protein TERM 2817 2903372 - 2903349 - G 81 -13.1 -3.63515 | overlap 2903330 2903329 CGCCATCTTGAATAA GCGGCGCGC ATTGCG GCACGCCGC TACAGCCCGCCAGAG TERM 2818 2904216 - 2904199 - R 100 -9.9 -5.78622 | opp_overlap 2904199 TTACCGCAAAAAAAA GCCACTA TAAA TAGTGGC TTATTAAATTAATCG TERM 2819 2904199 - 2904216 + r 79 -9.9 -3.74526 | opp_overlap 2904199 TTACCGCAAAAAAAA GCCACTA TAAA TAGTGGC TTATTAAATTAATCG Shew_2467 2904653 - 2904267 - | hypothetical protein Shew_2468 2904916 - 2904686 - | RNA-binding S4 domain-containing protein Shew_2469 2905513 - 2904965 - | GCN5-related N-acetyltransferase Shew_2470 2905796 - 2905518 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 2820 2905869 - 2905833 - R 93 -10.3 -4.93177 | opp_overlap 2905838, overlap 2905838 TAAAAATGAATAAAA TAAAACCCAGCAAGTAT AAA ACATTTGCTGGGTTTAA AAAGGTATAACGCTC TERM 2821 2905864 - 2905838 - R 100 -10.2 -5.28831 | opp_overlap 2905838, overlap 2905833 ATGAATAAAATAAAA CCCAGCAAGTAT AAA ACATTTGCTGGG TTTAAAAAGGTATAA TERM 2822 2905838 - 2905864 + r 77 -10.2 -3.55071 | opp_overlap 2905838 2905833 ATGAATAAAATAAAA CCCAGCAAGTAT AAA ACATTTGCTGGG TTTAAAAAGGTATAA Shew_2471 2907723 - 2905888 - | hypothetical protein TERM 2823 2905914 - 2905925 + g 85 -4.4 -5.18357 | CGCCCTGAGCTTTTA TCCA GCGG TGGA TTTTTTGCTCCATTA Shew_2472 2907803 - 2908312 + | diguanylate cyclase TERM 2824 2908337 - 2908362 + T 82 -10.5 -4.14392 | opp_overlap 2908343, overlap 2908343 TTATCTACAGGCATA AAAAAAGCCCC TTGC GGGGCTTTTTA TTTTAAGGCTTAAAG TERM 2825 2908343 - 2908356 + T 100 -9.5 -5.45802 | opp_overlap 2908343, overlap 2908337 ACAGGCATAAAAAAA GCCCC TTGC GGGGC TTTTTATTTTAAGGC TERM 2826 2908356 - 2908343 - T 100 -9.5 -5.65177 | opp_overlap 2908337 2908343 ACAGGCATAAAAAAA GCCCC TTGC GGGGC TTTTTATTTTAAGGC Shew_2473 2909619 - 2908372 - | tetratricopeptide domain-containing protein Shew_2474 2910239 - 2909622 - | TonB family protein TERM 2827 2910169 - 2910127 - G 75 -11.3 -3.39749 | overlap 2910130 TCAATAACCGGAGAA TCAGTGG-CAGTGTCGGCGCG TTT CGCGCCGCCACCGACCAA-GA AGGCCATGAAAACAA TERM 2828 2910167 - 2910130 - G 79 -14.1 -2.85061 | gap 1, overlap 2910127 ATAACCGGAGAATCA GTGG-CAGTGTCGGCGCG TTT CGCGCCGCCACCGACCAA GAAGGCCATGAAAAC Shew_2475 2910645 - 2910241 - | biopolymer transport protein ExbD/TolR Shew_2476 2911186 - 2910659 - | MotA/TolQ/ExbB proton channel Shew_2477 2912541 - 2911186 - | MotA/TolQ/ExbB proton channel Shew_2478 2913323 - 2912541 - | hypothetical protein TERM 2829 2913521 - 2913504 - R 84 -8.5 -4.40804 | opp_overlap 2913487 2913504 CATCATTTCACAAAA TGTTGAC CTGT GTCAACA TTTGGAAACGGCTAA TERM 2830 2913504 - 2913521 + r 71 -8.5 -3.53444 | opp_overlap 2913504, overlap 2913487 CATCATTTCACAAAA TGTTGAC CTGT GTCAACA TTTGGAAACGGCTAA Shew_2479 2914833 - 2913826 - | methyltransferase type 11 TERM 2831 2914746 - 2914727 - G 78 -4.2 -4.8543 | overlap 2914716 TAATTGCCAGAAAAA CTGTCACC AAAA GATGTCAG ATGTCCCTGTTGCCA TERM 2832 2914841 - 2914856 + r 91 -10.4 -4.87273 | opp_overlap 2914841 AATACCATAAAAAAA GGCCCT AAAT AGGGCC TTTTTATCAGATATT TERM 2833 2914856 - 2914841 - R 100 -10.4 -5.70829 | opp_overlap 2914841 AATACCATAAAAAAA GGCCCT AAAT AGGGCC TTTTTATCAGATATT Shew_2480 2917526 - 2914896 - | TonB-dependent receptor TERM 2834 2918309 - 2918333 + r 75 -8.6 -3.78329 | opp_overlap 2918314, overlap 2918314 TTTAGAAAGGTAATA AAAAAGCGCC AATTA GGCGCTTTTC TTTGAATTGGTCAGA TERM 2835 2918328 - 2918314 - R 100 -8.5 -5.52096 | opp_overlap 2918314 2918309 AAAGGTAATAAAAAA GCGCC AATTA GGCGC TTTTCTTTGAATTGG TERM 2836 2918314 - 2918328 + r 91 -8.5 -4.94058 | opp_overlap 2918314, overlap 2918309 AAAGGTAATAAAAAA GCGCC AATTA GGCGC TTTTCTTTGAATTGG Shew_2481 2919585 - 2918374 - | porin TERM 2837 2918512 - 2918484 - G 71 -6.8 -4.19624 | gap 1 GACCTTCAACATAAA GCACTGTGT-TGG CATC CCACACATAGTGC AGACCAACAACCACG Shew_2482 2922206 - 2919819 - | DNA polymerase II TERM 2838 2920918 - 2920905 - G 72 -2.3 -4.8622 | TGGGTCAATCAAAAA CGTTC TGAT GATCG AGGGATAAAGGCTCT dinG 2922369 - 2924441 + | ATP-dependent DNA helicase DinG TERM 2839 2924951 - 2924968 + G 75 -9.1 -4.09685 | gap 1 TACGACGGATTTGCC GGC-CCGG CGA CCGGCGCC TTTTGGACCATCAGC Shew_2484 2924480 - 2925253 + | hypothetical protein TERM 2840 2925756 - 2925743 - g 90 -5.3 -5.4505 | CCTTTGAACAAAAAA TTGCA CATT TGCAA TCTAAGCTTGAAAAC TERM 2841 2925801 - 2925791 - g 70 -5.4 -4.38154 | ATAGTGCTGACAAAA TTGC ACT GCAA AATGAAATACTTTTG Shew_2485 2925250 - 2925912 + | primosomal replication protein N'', putative Shew_2486 2925922 - 2926611 + | hypothetical protein Shew_2487 2926619 - 2927521 + | histone deacetylase superfamily protein Shew_2488 2927573 - 2927851 + | hypothetical protein TERM 2842 2928387 - 2928372 - T 100 -11.8 -4.99645 | ATTCTATAAACAAAA GCCCGC AAGT GCGGGC CAAATTCCATCGACA Shew_2489 2928712 - 2928413 - | helix-hairpin-helix repeat-containing competence protein ComEA TERM 2843 2928879 - 2928863 - H 71 -5.3 -4.48072 | opp_overlap 2928863 AGATGGATCACAAAA TAAATTA TTT TAATTTA TTTCAGTCTGTTATT TERM 2844 2929057 - 2929043 - H 72 -10 -2.97764 | opp_overlap 2929048 CACAGAAAAAATTTA GTTGCG CCA CGCAAC CGCTAGGCTAGTGTA Shew_2490 2929103 - 2930494 + | anion transporter TERM 2845 2930525 - 2930498 - T 79 -11.4 -3.12395 | opp_overlap 2930504, overlap 2930504 TGGACCATCTAAAAG TAAAAAGCCTGC AATC GCAGGCTTTTTT ATTGATCGAAGCTAA TERM 2846 2930519 - 2930504 - T 93 -10.4 -5.10154 | opp_overlap 2930504, overlap 2930498 ATCTAAAAGTAAAAA GCCTGC AATC GCAGGC TTTTTTATTGATCGA TERM 2847 2930504 - 2930519 + T 100 -10.4 -5.5112 | opp_overlap 2930504 2930498 ATCTAAAAGTAAAAA GCCTGC AATC GCAGGC TTTTTTATTGATCGA Shew_2491 2931752 - 2930577 - | methionine gamma-lyase Shew_2492 2932972 - 2931878 - | hypothetical protein Shew_2493 2934503 - 2933058 - | protein of unknown function DUF463, YcjX family protein Shew_2494 2934988 - 2934593 - | phage shock protein C, PspC pspB 2935214 - 2934975 - | phage shock protein B Shew_2496 2935918 - 2935235 - | phage shock protein A, PspA TERM 2848 2935616 - 2935631 + g 71 -4.6 -4.67038 | overlap 2935617 CTGCTCTAGGGTGCT TGCCAG CTCA CTGGCC TTTTGCTTTTCAAGC Shew_2497 2936096 - 2937166 + | sigma-54 dependent trancsriptional regulator TERM 2849 2938809 - 2938799 - g 89 -6.8 -5.27335 | GTGGTGAAACAAAAA TCGG TGA CCGA GGCTAAGCTGACCCC Shew_2498 2937254 - 2938897 + | extracellular solute-binding protein Shew_2499 2938897 - 2939928 + | binding-protein-dependent transport systems inner membrane component Shew_2500 2939915 - 2940805 + | binding-protein-dependent transport systems inner membrane component Shew_2501 2940818 - 2941831 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 2850 2942214 - 2942240 + GF 71 -8.7 -3.54951 | opp_overlap 2942174 GATACCCTGCGCAAG GTTGGCCTGCT GCCAG AGCACGCCGAC TTCTATCCTCACATG Shew_2502 2941806 - 2942591 + | ABC transporter-related protein TERM 2851 2943796 - 2943779 - g 71 -11.3 -3.08471 | overlap 2943769 GAGAACCTCAGCGAA CTCACGG ACTA CCGTGAG TACAAGGAAGAGTTC Shew_2503 2942696 - 2943898 + | trans-2-enoyl-CoA reductase TERM 2852 2943915 - 2943946 + T 100 -16 -4.17523 | opp_overlap 2943921, overlap 2943921 CCGCTCGCTCATCGA TGAAAAGCCACGGC CATT GCCGTGGCTTTTTG TTTTCCGGCTTATTT TERM 2853 2943921 - 2943940 + T 100 -15 -5.45802 | opp_overlap 2943921, overlap 2943915 GCTCATCGATGAAAA GCCACGGC CATT GCCGTGGC TTTTTGTTTTCCGGC TERM 2854 2943940 - 2943921 - T 100 -15 -4.2828 | opp_overlap 2943915 2943921 GCTCATCGATGAAAA GCCACGGC CATT GCCGTGGC TTTTTGTTTTCCGGC TERM 2855 2944341 - 2944359 + T 82 -10.3 -4.07885 | opp_overlap 2944341 CTTAGCAACAAAAAA GCCAGTC ACTAG GACTGGC TTTTGGCAACCCATC TERM 2856 2944359 - 2944341 - T 100 -10.3 -5.5112 | opp_overlap 2944341 CTTAGCAACAAAAAA GCCAGTC ACTAG GACTGGC TTTTGGCAACCCATC Shew_2504 2946256 - 2944391 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 2857 2946289 - 2946317 + r 79 -5.2 -5.06735 | gap 1, opp_overlap 2946290, overlap 2946290 GCAATAAAAATAAAA AGGCGCATC-ACC TATT GGAGGATGCGCCA TTTTTGTAATTTGTA TERM 2858 2946316 - 2946290 - R 100 -10.1 -5.74684 | opp_overlap 2946289 2946290 CAATAAAAATAAAAA GGCGCATCACC TATTG GAGGATGCGCC ATTTTTGTAATTTGT TERM 2859 2946290 - 2946316 + r 72 -8.7 -3.62414 | gap 1, opp_overlap 2946290, overlap 2946289 CAATAAAAATAAAAA GGCGCATC-ACC TATT GGAGGATGCGCC ATTTTTGTAATTTGT TERM 2860 2946414 - 2946431 + r 74 -9.9 -3.31792 | opp_overlap 2946414 CCCTACTCGTAAAAA GCACTGT CTAA ACAGTGC TTATCAAACTACTCG TERM 2861 2946431 - 2946414 - R 91 -9.9 -4.59773 | opp_overlap 2946414 CCCTACTCGTAAAAA GCACTGT CTAA ACAGTGC TTATCAAACTACTCG Shew_2505 2946754 - 2946482 - | histone family protein DNA-binding protein Shew_2506 2949371 - 2947014 - | ATP-dependent protease La TERM 2862 2949450 - 2949466 + r 82 -7.9 -4.50993 | opp_overlap 2949450 GCAAATATAAAAAAA GGAGCCC AGT GGACTCC TTTATGTTTATTTCG TERM 2863 2949466 - 2949450 - R 100 -10.1 -5.88197 | opp_overlap 2949450 GCAAATATAAAAAAA GGAGCCC AGT GGACTCC TTTATGTTTATTTCG clpX 2950778 - 2949498 - | ATP-dependent protease ATP-binding subunit clpP 2951474 - 2950863 - | ATP-dependent Clp protease proteolytic subunit TERM 2864 2951526 - 2951497 - R 100 -12.9 -5.27335 | opp_overlap 2951497 2951498, overlap 2951498 2951523 TTCCCTAAATAAAAA CGGCCCGCATGAG GAGC CTCATACGAGCCA TTATAAATGGCTAAC TERM 2865 2951525 - 2951498 - R 100 -14.2 -3.75678 | opp_overlap 2951498 2951497, overlap 2951497 2951523 TCCCTAAATAAAAAC GGCCCGCATGAG GAGC CTCATACGAGCC ATTATAAATGGCTAA TERM 2866 2951546 - 2951534 - R 72 -7.7 -3.98214 | opp_overlap 2951534, overlap 2951523 ACGAGCCATTATAAA TGGCT AAC AGCCA TTTAAGTCAAGCATA tig 2952868 - 2951564 - | trigger factor TERM 2867 2953082 - 2953096 + H 100 -11.4 -6.17669 | opp_overlap 2953082 ACGGACGTAAAAAAA GCGACC AGA GGTCGC TTTTTTTATTTTCTT TERM 2868 2953096 - 2953082 - H 100 -11.4 -5.47821 | opp_overlap 2953082 ACGGACGTAAAAAAA GCGACC AGA GGTCGC TTTTTTTATTTTCTT Shew_2510 2953769 - 2954623 + | methylenetetrahydrofolate dehydrogenase (NADP(+)) TERM 2869 2954734 - 2954718 - T 100 -12.3 -5.4492 | opp_overlap 2954718 GACAGATACAAAAAA GCCTGCA TAT TGCAGGC TTTTTTACGCGTGTT TERM 2870 2954718 - 2954734 + T 100 -12.3 -5.04987 | opp_overlap 2954718 GACAGATACAAAAAA GCCTGCA TAT TGCAGGC TTTTTTACGCGTGTT cysS 2956162 - 2954783 - | cysteinyl-tRNA synthetase Shew_2512 2956409 - 2956921 + | peptidylprolyl isomerase TERM 2871 2957079 - 2957103 + G 77 -8.5 -4.3467 | ATCTGTTTGAAGTCT GGGTGGGCGAT GAT ATCGCCGAGCC TTTTGCTCTGGAGCT Shew_2513 2956940 - 2957668 + | UDP-2,3-diacylglucosamine hydrolase Shew_2514 2958512 - 2957742 - | tRNA--hydroxylase TERM 2872 2958646 - 2958662 + H 71 -8.7 -3.54424 | ATAAATAAACTATGT CAGTCCT CAC AGGGCTG TTTGGGAGCCTGAGG Shew_2515 2958763 - 2959359 + | hypothetical protein TERM 2873 2959422 - 2959378 - T 100 -16.8 -3.18452 | opp_overlap 2959389, overlap 2959389 ATTAGGCTAACGCAA GATACAAAAAAGGCTTTAGG GTTCA CCTAAAGCCTTTTTAATATC AAGTTTAATACCAAG TERM 2874 2959411 - 2959389 - T 100 -12.1 -5.47431 | opp_overlap 2959389, overlap 2959378 GCAAGATACAAAAAA GGCTTTAGG GTTCA CCTAAAGCC TTTTTAATATCAAGT TERM 2875 2959389 - 2959411 + T 100 -12.1 -4.80882 | opp_overlap 2959378 2959389 GCAAGATACAAAAAA GGCTTTAGG GTTCA CCTAAAGCC TTTTTAATATCAAGT Shew_2516 2961113 - 2959443 - | glutaminyl-tRNA synthetase TERM 2876 2960012 - 2960031 + g 83 -10 -4.21194 | GTGCAGATAGCTTCT CTACCTGG CCTT CCGGGTAG TTTTCGATGATCACC TERM 2877 2961285 - 2961254 - R 100 -14.6 -4.62783 | opp_overlap 2961254 2961256 2961261, overlap 2961256 2961261 GATTTAGCGCAAAAA CAGAAAAGCAGCGA CTTA TCGCTGCTTTTCTC GGTTTAACAAGCTGT TERM 2878 2961254 - 2961286 + r 87 -14.4 -2.73007 | gap 1, opp_overlap 2961254 2961256 2961261, overlap 2961256 2961261 2961285 GATTTAGCGCAAAAA C-AGAAAAGCAGCGA CTTA TCGCTGCTTTTCTCG GTTTAACAAGCTGTT TERM 2879 2961256 - 2961283 + r 100 -17.2 -2.64274 | opp_overlap 2961256 2961254 2961261, overlap 2961254 2961261 TTTAGCGCAAAAACA GAAAAGCAGCGA CTTA TCGCTGCTTTTC TCGGTTTAACAAGCT TERM 2880 2961283 - 2961256 - R 100 -17.2 -3.92746 | opp_overlap 2961254 2961256 2961261, overlap 2961254 2961261 TTTAGCGCAAAAACA GAAAAGCAGCGA CTTA TCGCTGCTTTTC TCGGTTTAACAAGCT TERM 2881 2961278 - 2961261 - R 100 -11.3 -4.98672 | opp_overlap 2961256 2961254 2961261, overlap 2961256 2961254 CGCAAAAACAGAAAA GCAGCGA CTTA TCGCTGC TTTTCTCGGTTTAAC TERM 2882 2961261 - 2961278 + r 100 -11.3 -4.51196 | opp_overlap 2961261 2961256 2961254, overlap 2961256 2961254 CGCAAAAACAGAAAA GCAGCGA CTTA TCGCTGC TTTTCTCGGTTTAAC Shew_2517 2963613 - 2961319 - | ferrous iron transport protein B Shew_2518 2963845 - 2963606 - | FeoA family protein Shew_2519 2964239 - 2965207 + | cytochrome C family protein Shew_2520 2965223 - 2967334 + | outer membrane protein, putative Shew_2521 2967363 - 2969282 + | decaheme cytochrome c MtrF TERM 2883 2969318 - 2969284 - f 71 -4.9 -4.49958 | gap 1, overlap 2969292 ATCCCATCAAATAAA CCGGACAAGGCGCCAG CTCA CTGGCGCCG-ATTCGA CAACGCATTGAGAGA TERM 2884 2969311 - 2969292 - f 100 -15 -3.428 | overlap 2969284 AAATAAACCGGACAA GGCGCCAG CTCA CTGGCGCC GATTCGACAACGCAT TERM 2885 2970222 - 2970242 + G 70 -9.7 -3.53224 | GAAGGGATTGTACCC GCCCCCTAT AAG ATAGTGGGC TTTGGCGGCAGCCTG TERM 2886 2970351 - 2970323 - g 70 -10.1 -3.51934 | opp_overlap 2970321 2970326, overlap 2970321 CGCCTGTCACAAAGA GGGGGACGGCGCC CCA AGCGACGCCGCCC TGTTTAAGGCTGATA Shew_2522 2969343 - 2971505 + | decaheme cytochrome c TERM 2887 2971562 - 2971547 - f 87 -10.4 -4.43221 | opp_overlap 2971547 AAACACTGGATAAAA GGAGGC TGCG GCCTCC TTTTTTATCGCCCTA TERM 2888 2971547 - 2971562 + F 100 -10.4 -5.252 | opp_overlap 2971547 AAACACTGGATAAAA GGAGGC TGCG GCCTCC TTTTTTATCGCCCTA TERM 2889 2972235 - 2972220 - g 71 -6.8 -4.25437 | AAACCAAGATAGAAA GCGCCA GCTA TGACGC GGCGGCCAAGACCCT Shew_2523 2972045 - 2974318 + | hypothetical protein TERM 2890 2974393 - 2974353 - f 80 -8.3 -4.20932 | opp_overlap 2974361, overlap 2974356 2974361 AAGACCCATTTAAAA TAAGCTAAGAGTGTCAGGC CAT GCCTGGCACTCTTTTTTTA TCGCCGCTTTCTGTT TERM 2891 2974361 - 2974385 + F 100 -16.5 -5.60993 | opp_overlap 2974356 2974353 2974361 TTTAAAATAAGCTAA GAGTGTCAGGC CAT GCCTGGCACTC TTTTTTTATCGCCGC TERM 2892 2974385 - 2974361 - f 100 -14.3 -3.37556 | opp_overlap 2974361, overlap 2974356 2974353 TTTAAAATAAGCTAA GAGTGTCAGGC CAT GCCTGGCACTC TTTTTTTATCGCCGC Shew_2524 2974805 - 2976982 + | decaheme cytochrome c TERM 2893 2977030 - 2977055 + F 100 -15.5 -4.8048 | overlap 2977034 GGTCGACATCTACCT CGAAGGGAGGC ACTC GCCTCCCTTTG TTTTTACTGTAGAAC TERM 2894 2977034 - 2977051 + F 100 -12.7 -4.94262 | overlap 2977030 GACATCTACCTCGAA GGGAGGC ACTC GCCTCCC TTTGTTTTTACTGTA TERM 2895 2977120 - 2977097 - f 83 -4 -5.40014 | gap 1, opp_overlap 2977106, overlap 2977099 2977106 AAATAAGAACAAAAA TCGCAAAACTG TTT CA-TTTTGCAA CATTTTTTCCGTCAA TERM 2896 2977106 - 2977122 + F 76 -3.7 -5.08824 | opp_overlap 2977099 2977097 2977106 CAAAAATCGCAAAAC TGTTTCA TTT TGCAACA TTTTTTCCGTCAAGC Shew_2525 2977355 - 2979325 + | decaheme cytochrome c TERM 2897 2979376 - 2979341 - f 87 -11.2 -3.59979 | opp_overlap 2979348 2979349, overlap 2979342 2979348 2979349 TTTGCGCATCTCAAA TTGAAAACCGGGGGAG TCAC CTCCCCCACTTTTCAC GACTCATTTGTGCAA TERM 2898 2979375 - 2979342 - f 89 -14.7 -2.75844 | opp_overlap 2979348 2979349, overlap 2979341 2979348 2979349 TTGCGCATCTCAAAT TGAAAACCGGGGGAG TCAC CTCCCCCACTTTTCA CGACTCATTTGTGCA TERM 2899 2979369 - 2979348 - f 79 -7.9 -4.35926 | opp_overlap 2979348 2979349, overlap 2979342 2979341 2979349 ATCTCAAATTGAAAA CCGGGGGAG TCAC CTCCCCCAC TTTTCACGACTCATT TERM 2900 2979368 - 2979349 - f 81 -11.4 -3.20832 | opp_overlap 2979349 2979348, overlap 2979348 2979342 2979341 TCTCAAATTGAAAAC CGGGGGAG TCAC CTCCCCCA CTTTTCACGACTCAT Shew_2526 2979407 - 2980396 + | cytochrome C family protein Shew_2527 2980409 - 2982508 + | outer membrane protein precursor MtrB TERM 2901 2982553 - 2982537 - f 95 -10.8 -4.67755 | opp_overlap 2982537 ATAGCTAGCTAAAAA CCCGCG CCCGT CGCGGG TTTTTTATGCTCCAT TERM 2902 2982537 - 2982553 + F 100 -10.8 -5.31877 | opp_overlap 2982537 ATAGCTAGCTAAAAA CCCGCG CCCGT CGCGGG TTTTTTATGCTCCAT TERM 2903 2982594 - 2982604 + F 79 -6.8 -4.62069 | opp_overlap 2982594 2982592 CATCTCGCAAAAACA GCCT CCC AGGC TTTTTCCCGTCGGGC TERM 2904 2983091 - 2983081 - g 71 -8.2 -3.89346 | overlap 2983082 CCTGCAGCTGATAAA GCCC GAG GGGC GGGATCTCAATCACC TERM 2905 2983636 - 2983618 - g 80 -5.2 -4.89852 | opp_overlap 2983624, overlap 2983619 CGACAGGGATAAAAA CGCCCTGC TGC GCAAGACA CTGGCCAGCTATCTG Shew_2528 2982665 - 2983828 + | transcriptional regulator, CdaR Shew_2529 2985622 - 2983886 - | pseudouridine synthase Shew_2530 2986725 - 2985754 - | C4-dicarboxylate transporter/malic acid transport protein TERM 2906 2986123 - 2986099 - G 74 -12.8 -2.88544 | TGTCACCGTTAGATA GCCTGCCAGC GAGAG GCTGGCCGGC GCCGCCAGAATCGCC TERM 2907 2986564 - 2986552 - G 81 -2.7 -5.33405 | GTTATGAAAGAAAAA CTTAA CGC TCAAG ACGGCTAGCAAGACG TERM 2908 2987410 - 2987450 + G 76 -5.3 -4.72986 | overlap 2987411 ATCACCTCGAGGCCA GTCACTGGATCCTGCGC GAAGCCG GCTCAGGCTCCAGGGAA TTTTTCCTGCGAGTC Shew_2531 2986836 - 2987738 + | LysR family transcriptional regulator TERM 2909 2988276 - 2988294 + F 76 -3.8 -5.09426 | overlap 2988277 TTGTTGTTGGAATTG TCGGTG TGTTTTT CACCGG TTTTTTAGCCTTGAA TERM 2910 2989041 - 2989017 - g 70 -11.5 -2.90685 | overlap 2989014 AATCCAAACCAATTA TCTTGATGACC ATG GGTCAGCAAGA CAGGAACCAGCATCC Shew_2532 2988971 - 2989774 + | peptidase C26 Shew_2533 2990037 - 2991395 + | gluconate transporter TERM 2911 2991436 - 2991406 - f 70 -10.3 -2.63991 | gap 1, overlap 2991405 TCTAAGCTAAGCAAG CCGGCGCCATTGGC CTAG GCCTG-GGCGCCGG ACAACCCAACTCGTT TERM 2912 2992164 - 2992141 - g 76 -6.6 -4.56597 | TTCGGGCCGCAAAAA GGCGCCGATG AGAT CATGGTCGCC AGATTAGACAATGCC Shew_2534 2991493 - 2992638 + | glycerate kinase TERM 2913 2992663 - 2992688 + F 91 -9.7 -4.81551 | gap 1, opp_overlap 2992662 2992663 CGATTTGACCTAAAT GCCCTGACGCCG CCT TGGC-TCGGGGC TTTTTACTATCAGTA Shew_2535 2992865 - 2994505 + | pyridoxal-dependent decarboxylase Shew_2536 2995016 - 2994546 - | putative thiol-disulphide oxidoreductase DCC TERM 2914 2994898 - 2994888 - G 71 -8.2 -3.96148 | GCGCCTGACGATAAA GCGC ACC GCGC CGTGGCACAGGTTAC Shew_2537 2995324 - 2996262 + | AraC family transcriptional regulator Shew_2538 2996479 - 2997216 + | AzlC family protein Shew_2539 2997213 - 2997518 + | branched-chain amino acid transport Shew_2540 2997531 - 2997842 + | NIPSNAP family protein Shew_2541 2998553 - 2997867 - | helix-turn-helix, type 11 domain-containing protein Shew_2542 2999112 - 2998654 - | transcription activator, effector binding Shew_2543 2999665 - 2999246 - | glyoxalase family protein Shew_2544 3001588 - 2999834 - | phosphoglucomutase/phosphomannomutase alpha/beta/subunit Shew_2545 3002727 - 3001822 - | diguanylate cyclase TERM 2915 3002687 - 3002674 - G 78 -5.9 -4.77775 | overlap 3002675 ACTGGACAAAATAAA CGCCG GATC CGGCA GTGCCTCTAGCACGG Shew_2546 3003735 - 3002815 - | hypothetical protein TERM 2916 3002882 - 3002872 - G 76 -5.4 -4.82901 | GGTCTGTGACAAAAA TGGA TTA TCCA GGCGAAACACACGTC TERM 2917 3004063 - 3004082 + G 70 -10 -3.53012 | gap 1 GGACGCCTGCACCCT GCTGGC-CG AGG CGAGCCAGC TTTCCAAGCAGGAGA Shew_2547 3003986 - 3004849 + | pseudouridine synthase Shew_2548 3006845 - 3004857 - | potassium efflux system protein TERM 2918 3006006 - 3005969 - G 74 -2.7 -4.99043 | gap 1, overlap 3005970 3005971 3005982 3005983 CTGTGATAAAGAAAA GCCCCAACAGCAAGCCCT TGA AGGGGTCGATATTGG-AC TCAAGTTCATGGCGA TERM 2919 3006795 - 3006775 - G 73 -8.1 -4.15453 | overlap 3006763 GAACCCAGGCCAAAA CGCCTGGCC AGG GGCACGGCG ATCACGGCGGCGACC Shew_2549 3007468 - 3006851 - | NAD(P)H dehydrogenase (quinone) Shew_2550 3008244 - 3007699 - | GCN5-related N-acetyltransferase Shew_2551 3009202 - 3008237 - | homoserine O-succinyltransferase Shew_2552 3009677 - 3009276 - | hypothetical protein Shew_2553 3009796 - 3010566 + | short-chain dehydrogenase/reductase SDR TERM 2920 3010634 - 3010592 - T 100 -12.9 -4.84529 | gap 1, opp_overlap 3010600 3010606, overlap 3010595 3010606 GCAGAAAGTTAAAAA GCAGAGATGAAAAAGGAGCC GATT GGCTCCTTTTTCTTTTC-GC TATCTAGCGAGATTA TERM 2921 3010632 - 3010595 - T 100 -14.3 -3.30199 | opp_overlap 3010600 3010606, overlap 3010592 3010606 GAAAGTTAAAAAGCA GAGATGAAAAAGGAGCC GATT GGCTCCTTTTTCTTTTC GCTATCTAGCGAGAT TERM 2922 3010600 - 3010627 + T 100 -17.2 -4.26188 | opp_overlap 3010595 3010592 3010606, overlap 3010606 TTAAAAAGCAGAGAT GAAAAAGGAGCC GATT GGCTCCTTTTTC TTTTCGCTATCTAGC TERM 2923 3010621 - 3010606 - T 91 -10.4 -4.85129 | opp_overlap 3010600 3010606, overlap 3010595 3010592 AGCAGAGATGAAAAA GGAGCC GATT GGCTCC TTTTTCTTTTCGCTA TERM 2924 3010606 - 3010621 + T 100 -10.4 -5.48213 | opp_overlap 3010606 3010595 3010592, overlap 3010600 AGCAGAGATGAAAAA GGAGCC GATT GGCTCC TTTTTCTTTTCGCTA Shew_2554 3011288 - 3010647 - | outer membrane protein W TERM 2925 3011399 - 3011411 + r 72 -3.3 -4.99035 | opp_overlap 3011400, overlap 3011400 CCAAATCAATAAGCT AGGGT AAT ACCCC TTTTTGTATAGCTAG TERM 2926 3012490 - 3012475 - R 100 -10.4 -5.35459 | opp_overlap 3012474 3012475 ATAGAGCATAAAAAA GGAGCC CTGA GGCTCC CTTATCTATCCATTA TERM 2927 3012475 - 3012490 + r 71 -10.4 -2.76708 | opp_overlap 3012475, overlap 3012474 ATAGAGCATAAAAAA GGAGCC CTGA GGCTCC CTTATCTATCCATTA TERM 2928 3012547 - 3012562 + r 73 -9 -3.43751 | overlap 3012546 TTTGACCAGCTTCAT CACCAC TTCA GTGGTG TATTTGCCGTTGTTG Shew_2555 3012921 - 3012529 - | hypothetical protein TERM 2929 3012893 - 3012903 + g 71 -6.8 -4.26292 | opp_overlap 3012893 3012892 ATAAGCAGCAAAGAC GCCA ATA TGGC TTTCATTTTCATCTT Shew_2556 3013813 - 3012950 - | acyl-CoA thioesterase II Shew_2557 3014871 - 3013951 - | short-chain dehydrogenase/reductase SDR TERM 2930 3014180 - 3014147 - G 70 -12.3 -2.62184 | overlap 3014165 CCGTGGCTCACACTA CCGGCCGCGGCCAGC AGAT GCTGACCACTGCAGG CCGTCGATGAGCAGA TERM 2931 3014795 - 3014769 - G 85 -14.4 -3.42354 | TACCCGAATCGATAA TGGCCAAGCGCG CCC CGCGCTCGGCTA AGGCGATCGCGTAGG Shew_2558 3015276 - 3016148 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 2932 3016212 - 3016158 - T 100 -17.5 -3.63968 | gap 1, opp_overlap 3016177, overlap 3016166 3016177 GCCTAAAGCGGCAAA CCGACATAGCCATAAAAAATGCCAGC AATT GCTGGCATTTTTTATGGCGA-GTCAT CACACAATTTAGAGG TERM 2933 3016205 - 3016166 - T 100 -25.4 -2.98088 | opp_overlap 3016177, overlap 3016158 3016177 CGGCAAACCGACATA GCCATAAAAAATGCCAGC AATT GCTGGCATTTTTTATGGC GAGTCATCACACAAT TERM 2934 3016194 - 3016177 - T 100 -11.3 -5.29782 | opp_overlap 3016177, overlap 3016166 3016158 CATAGCCATAAAAAA TGCCAGC AATT GCTGGCA TTTTTTATGGCGAGT TERM 2935 3016177 - 3016194 + T 100 -11.3 -5.24531 | opp_overlap 3016166 3016158 3016177 CATAGCCATAAAAAA TGCCAGC AATT GCTGGCA TTTTTTATGGCGAGT Shew_2559 3016757 - 3016221 - | malate synthase TERM 2936 3017255 - 3017265 + G 70 -5.4 -4.3739 | overlap 3017240 3017250 3017261 GCATGGCGCTGGAGC CAAG CTT CTTG TTTTCTAACGAGATA Shew_2560 3016939 - 3018471 + | XRE family transcriptional regulator TERM 2937 3018518 - 3018498 - T 100 -8.3 -5.71712 | opp_overlap 3018498 GCCGAGATAAAAAAA CCGCTAG TCAATCG CTAGCGG TTTTTCTTTTCTATT TERM 2938 3018498 - 3018518 + T 100 -9 -5.60556 | opp_overlap 3018498 GCCGAGATAAAAAAA CCGCTAGT CAATC GCTAGCGG TTTTTCTTTTCTATT Shew_2561 3020091 - 3018550 - | 6-phosphogluconate dehydrogenase TERM 2939 3020286 - 3020302 + r 71 -4.4 -4.61566 | TCCAGGCTTACTGGC CGCTGT GCAGA ACAGTG TTTTCTCATTTAAAA Shew_2562 3020827 - 3020357 - | MarR family transcriptional regulator TERM 2940 3021058 - 3021087 + H 88 -9.3 -4.56367 | opp_overlap 3021056, overlap 3021054 TAAAAACACATTACT TTGCGCACAAAGC ATTT GCATTGTGCTCAA TTTGTTTGTAGAGTC Shew_2563 3021146 - 3022141 + | alcohol dehydrogenase TERM 2941 3022171 - 3022192 + F 100 -13.7 -5.24449 | opp_overlap 3022171 AGATAACGCCACAAA GACCGGCTC CATT GGGCCGGTC TTTTTTACCTTTATA TERM 2942 3022192 - 3022171 - f 100 -12.3 -3.94381 | gap 1, opp_overlap 3022171 AGATAACGCCACAAA GACCGGCTCC ATT GG-GCCGGTC TTTTTTACCTTTATA Shew_2564 3022340 - 3023152 + | MltA-interacting MipA family protein TERM 2943 3023191 - 3023166 - T 76 -5.5 -4.77925 | gap 1 AAAAAATTGGAAAAA TTAGGCCTAAAC CCC GCTC-GGCCTAA GGGCAAAGGATCTGC TERM 2944 3023315 - 3023299 - T 100 -9.4 -5.79595 | opp_overlap 3023299 CTGCAAAAGAAAAAA GCCTGC ATCAA GCAGGC TTTTCATCTAACAAG TERM 2945 3023299 - 3023315 + T 86 -9.4 -4.34402 | opp_overlap 3023299 CTGCAAAAGAAAAAA GCCTGC ATCAA GCAGGC TTTTCATCTAACAAG Shew_2565 3023628 - 3023374 - | hypothetical protein Shew_2566 3024239 - 3023766 - | hypothetical protein Shew_2567 3025259 - 3024276 - | MORN repeat-containing protein TERM 2946 3025623 - 3025596 - R 93 -13.6 -3.14963 | opp_overlap 3025603, overlap 3025603 GCGAGAAGCATGCAA CAAAAAAGGGCC AGAG GGCCCTTTTTTA ATAACAAGTAAAAGA TERM 2947 3025616 - 3025603 - R 100 -9.5 -5.4833 | opp_overlap 3025603, overlap 3025596 GCATGCAACAAAAAA GGGCC AGAG GGCCC TTTTTTAATAACAAG TERM 2948 3025603 - 3025616 + r 93 -9.5 -5.14563 | opp_overlap 3025596 3025603 GCATGCAACAAAAAA GGGCC AGAG GGCCC TTTTTTAATAACAAG Shew_2568 3027632 - 3025644 - | AMP-dependent synthetase and ligase Shew_2569 3027951 - 3028352 + | MerR family transcriptional regulator TERM 2949 3028835 - 3028806 - g 79 -4.1 -5.08088 | AATGCCGAACAAAAA GCCAAGTACCTGC CTAA GCTGGTAAGCGGC GAGCATATCGGCGCC Shew_2570 3028464 - 3029633 + | acyl-CoA dehydrogenase domain-containing protein TERM 2950 3029668 - 3029650 - f 100 -16 -2.63631 | CGAATGCGTAGAGTA GGCCGGAC CCA GTCCGGCC TCGGGCGGGCAATCG Shew_2571 3029723 - 3031330 + | propionyl-CoA carboxylase Shew_2572 3031379 - 3032179 + | enoyl-CoA hydratase/isomerase Shew_2573 3032237 - 3034270 + | carbamoyl-phosphate synthase L chain, ATP-binding TERM 2951 3034365 - 3034350 - g 74 -10.4 -3.56325 | CCTGCAGAACGAGAA GGCGGT CACC ACCGCC GACAAGCTGACCCTT Shew_2574 3034273 - 3035178 + | pyruvate carboxyltransferase Shew_2575 3035225 - 3035926 + | 3-oxoacid CoA-transferase, A subunit Shew_2576 3035939 - 3036595 + | 3-oxoacid CoA-transferase, B subunit TERM 2952 3036640 - 3036621 - T 100 -13.6 -5.03314 | opp_overlap 3036621 CGGACCCTCAAAAAA GCCCAGAG TGAA CTCTGGGC TTTTTCATTTCCGAT TERM 2953 3036621 - 3036640 + T 100 -13.6 -4.99134 | opp_overlap 3036621 CGGACCCTCAAAAAA GCCCAGAG TGAA CTCTGGGC TTTTTCATTTCCGAT Shew_2577 3038260 - 3036686 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 2954 3036987 - 3037005 + g 70 -11 -3.03159 | overlap 3036989 3036994 3036997 GCCTGAGTTGCCTGG CGCTGACC TGC GGTCAGTG TGTTCGCCGCATTGG Shew_2578 3038648 - 3039451 + | extracellular solute-binding protein TERM 2955 3039613 - 3039571 - T 100 -17.2 -2.76589 | opp_overlap 3039584, overlap 3039584 ATACTCAAGACATTA GGCCATTAAAAAAGCCACCC CGA GGGTGGCTTCTTTAATGGTG CGATCACCTAGGCGG TERM 2956 3039584 - 3039600 + T 100 -13.7 -4.0274 | opp_overlap 3039584 3039571 TAGGCCATTAAAAAA GCCACCC CGA GGGTGGC TTCTTTAATGGTGCG TERM 2957 3039600 - 3039584 - T 100 -13.7 -5.15634 | opp_overlap 3039584, overlap 3039571 TAGGCCATTAAAAAA GCCACCC CGA GGGTGGC TTCTTTAATGGTGCG Shew_2579 3040210 - 3039632 - | thymidine kinase TERM 2958 3042746 - 3042713 - g 75 -9.7 -3.78934 | gap 1, opp_overlap 3042712 3042721 GGCCTGTCACAACAA TGGTCAAGA-TCGCCG CGC CGGCAACTCTTCACCA GGTTTCGGCCCTATG Shew_2580 3041118 - 3043151 + | hypothetical protein TERM 2959 3043203 - 3043222 + F 91 -6.4 -5.4505 | opp_overlap 3043203 CTAGTTCCAACCAAA GGAGCC CTTCGCCA GGCTCC TTTTTTCTTGGCCCC TERM 2960 3043222 - 3043203 - f 70 -7.1 -3.91084 | opp_overlap 3043203 CTAGTTCCAACCAAA GGAGCCC TTCGCC AGGCTCC TTTTTTCTTGGCCCC Shew_2581 3043336 - 3045480 + | peptidyl-dipeptidase Dcp TERM 2961 3045522 - 3045556 + T 100 -17.4 -2.79831 | opp_overlap 3045530, overlap 3045530 ATGGGGAGTCACTCA TAAAAAAATGCCGCTC GAT GAGCGGCATTTTTATA TCTAATGAACCTTGA TERM 2962 3045548 - 3045530 - T 100 -14.6 -5.64274 | opp_overlap 3045522 3045530 TCACTCATAAAAAAA TGCCGCTC GAT GAGCGGCA TTTTTATATCTAATG TERM 2963 3045530 - 3045548 + T 100 -14.6 -5.05601 | opp_overlap 3045530, overlap 3045522 TCACTCATAAAAAAA TGCCGCTC GAT GAGCGGCA TTTTTATATCTAATG Shew_2582 3047152 - 3045587 - | Na+/H+ antiporter NhaC TERM 2964 3047136 - 3047122 - G 70 -5.6 -4.49556 | overlap 3047123 GCGGCAGCAAAGAAA GTGCCG AAT CGGCAT AACTCAAAGTTGTCA TERM 2965 3047533 - 3047493 - R 93 -9.9 -4.99035 | gap 1, opp_overlap 3047493 3047494 3047531, overlap 3047498 TGAGGCACATAAAAA CAC-AAGCGGCTTTAAGG ACGCTA CCTCAAAGCCGCTCCATG TGATCTATATCACAC TERM 2966 3047527 - 3047498 - R 100 -14.4 -4.16226 | opp_overlap 3047494 3047493, overlap 3047493 CACATAAAAACACAA GCGGCTTTAAGG ACGCTA CCTCAAAGCCGC TCCATGTGATCTATA Shew_2583 3048519 - 3047596 - | electron transfer flavoprotein, alpha subunit Shew_2584 3049269 - 3048520 - | electron transfer flavoprotein beta-subunit TERM 2967 3049477 - 3049467 - H 70 -2.6 -4.90525 | GAAGCTGAAATAAAA TTTA CAT TAAA GCGTCAAATATTCAT TERM 2968 3049850 - 3049840 - g 86 -6.8 -5.02074 | CCAGCTCCTAAAAAA CGTG CTC CACG CCCACCAAAATATAA Shew_2585 3049582 - 3049974 + | histone family protein nucleoid-structuring protein H-NS TERM 2969 3050027 - 3050010 - f 93 -11.3 -4.4078 | opp_overlap 3050010 GCGTCGCAAGCAAAA GCCAACC TCAA GGTTGGC TTTTTTATTTCTACT TERM 2970 3050010 - 3050027 + F 100 -11.3 -5.73978 | opp_overlap 3050010 GCGTCGCAAGCAAAA GCCAACC TCAA GGTTGGC TTTTTTATTTCTACT TERM 2971 3051940 - 3051927 - g 71 -4.5 -4.59773 | opp_overlap 3051917, overlap 3051928 3051929 GGTGATGGCCAAAAA CGCCA TTGA TGGCA GTGGTGAGAGTGATA Shew_2586 3050329 - 3053469 + | amidohydrolase Shew_2587 3053469 - 3054737 + | hypothetical protein TERM 2972 3054792 - 3054753 - f 77 -10.2 -3.53091 | gap 1, opp_overlap 3054754 3054763, overlap 3054756 3054763 ACTTTTGCTTCTAAA CGA-CTCAAAACTGGCC GGTTATT GGCCAGTTTTGAGCTCT CTTCCTAATACAGGC TERM 2973 3054754 - 3054791 + F 95 -15.1 -3.17051 | gap 1, opp_overlap 3054753 3054756 3054763, overlap 3054763 CTTTTGCTTCTAAAC GA-CTCAAAACTGGCCGG TTA TTGGCCAGTTTTGAGCTC TCTTCCTAATACAGG TERM 2974 3054788 - 3054756 - f 100 -16.5 -2.90496 | opp_overlap 3054754 3054763, overlap 3054753 3054763 TTTGCTTCTAAACGA CTCAAAACTGGCC GGTTATT GGCCAGTTTTGAG CTCTCTTCCTAATAC TERM 2975 3054763 - 3054781 + F 80 -8.8 -4.19472 | opp_overlap 3054756 3054753 3054763, overlap 3054754 CTAAACGACTCAAAA CTGGCCGG TTA TTGGCCAG TTTTGAGCTCTCTTC TERM 2976 3054781 - 3054763 - f 74 -7.4 -4.26079 | opp_overlap 3054763 3054754, overlap 3054756 3054753 CTAAACGACTCAAAA CTGGCC GGTTATT GGCCAG TTTTGAGCTCTCTTC Shew_2588 3054815 - 3055231 + | putative lipoprotein Shew_2589 3055273 - 3056010 + | hypothetical protein Shew_2590 3056013 - 3056642 + | hexapaptide repeat-containing transferase Shew_2591 3056915 - 3056652 - | hypothetical protein TERM 2977 3056760 - 3056776 + g 73 -5 -4.63486 | overlap 3056762 ATTATCCGGGTTATT GGGCCG CGACT CGGCGC TTTTCTTAACCCCAT Shew_2592 3057319 - 3058905 + | peptidase M28 TERM 2978 3058926 - 3058954 + F 78 -11.2 -2.93415 | gap 1, opp_overlap 3058933, overlap 3058933 GCCGTGATACTTACC GACAAAAGGAGGC CGCG GCCTCCTTTT-TC ATATTGTTTTTATTG TERM 2979 3058948 - 3058933 - f 87 -10.4 -4.431 | opp_overlap 3058933 3058926 TACTTACCGACAAAA GGAGGC CGCG GCCTCC TTTTTCATATTGTTT TERM 2980 3058933 - 3058948 + F 93 -10.4 -4.94672 | opp_overlap 3058933, overlap 3058926 TACTTACCGACAAAA GGAGGC CGCG GCCTCC TTTTTCATATTGTTT Shew_2593 3059120 - 3060844 + | acyl-CoA synthetase TERM 2981 3060863 - 3060891 + T 100 -7.4 -5.47218 | overlap 3060864 TCCCAGCTAGCCCTT CGCCAGCCTATT CCCTA AACAGGCTGGCA TTTTTTTGCCTGGCA TERM 2982 3060864 - 3060890 + T 86 -10.9 -3.87608 | overlap 3060863 CCCAGCTAGCCCTTC GCCAGCCTATT CCCTA AACAGGCTGGC ATTTTTTTGCCTGGC Shew_2594 3061225 - 3060953 - | hypothetical protein TERM 2983 3061333 - 3061310 - R 74 -7.5 -4.18164 | AACGGCCTAAAATAA CTGGCCTTA ATGACA TAAGACCAG AGCATGCATATCCCG Shew_2595 3061678 - 3061373 - | hypothetical protein TERM 2984 3062249 - 3062223 - g 79 -3.7 -5.0916 | gap 1, overlap 3062225 3062227 CTTTCAACACAAAAA GA-GACCCCAGC AAAC GCTGAGGTGGTC AGTCATCAATTAATG TERM 2985 3063574 - 3063560 - g 70 -10 -3.4252 | opp_overlap 3063558 TGCCATCGAGCAGAA CCACGA CGA TCGTGG CATCATCTGGCCAGC Shew_2596 3062187 - 3063896 + | prolyl-tRNA synthetase TERM 2986 3063961 - 3063932 - T 100 -16.5 -3.30338 | opp_overlap 3063937, overlap 3063937 ATAAGCTGCTTACAA GAAAACGCCCGGC AACT GCCGGGCGTTTTT ATTATCTACTAAAAA TERM 2987 3063937 - 3063956 + T 100 -16.4 -5.25699 | opp_overlap 3063932 3063937 CTGCTTACAAGAAAA CGCCCGGC AACT GCCGGGCG TTTTTATTATCTACT TERM 2988 3063956 - 3063937 - T 100 -16.4 -4.77165 | opp_overlap 3063937, overlap 3063932 CTGCTTACAAGAAAA CGCCCGGC AACT GCCGGGCG TTTTTATTATCTACT Shew_2597 3064725 - 3064009 - | hypothetical protein Shew_2598 3065479 - 3065072 - | hypothetical protein TERM 2989 3065477 - 3065465 - G 80 -5.5 -4.88222 | ACTAAAAGCTAAAAA GACCA AAG CGGTC ACTATTATCTTGGCG TERM 2990 3065979 - 3065963 - g 77 -2.9 -5.02476 | overlap 3065971 AGATTGTCGAAAAAA CAGAATC ATG GAGCCTG GATGGCCACAAGTGA Shew_2599 3065659 - 3065994 + | HxlR family transcriptional regulator Shew_2600 3066813 - 3066472 - | hypothetical protein Shew_2601 3067329 - 3066922 - | hypothetical protein TERM 2991 3067049 - 3067039 - G 71 -6.8 -4.25056 | TACCCCATCAATAAA CCAC AAT GTGG TGAATAGGATTTGAA TERM 2992 3067414 - 3067374 - R 77 -9.8 -3.6608 | gap 1, opp_overlap 3067378, overlap 3067377 AGCATCCGAGTGAAA CGAGGTCCAGCGAACAACG GGAA CGTTGCTCGCT-GACTTGG TTATAGCTTGCCATT TERM 2993 3067411 - 3067377 - R 72 -10.1 -2.94322 | gap 1, opp_overlap 3067378, overlap 3067374 ATCCGAGTGAAACGA GGTCCAGCGAACAACG GGAA CGTTGCTCGCT-GACT TGGTTATAGCTTGCC TERM 2994 3067378 - 3067410 + r 85 -11.4 -3.47403 | gap 1, opp_overlap 3067377 3067374 TCCGAGTGAAACGAG GTCCAGCGAACAACG GGAA CGTTGCTCGCTG-AC TTGGTTATAGCTTGC TERM 2995 3067421 - 3067440 + r 83 -2.8 -5.47159 | CTGACTTGGTTATAG CTTGCCAT TTAT ATTGCGAG TTTTTATTTCTTGAA TERM 2996 3067747 - 3067731 - R 90 -12.3 -3.37796 | opp_overlap 3067725 CCTCATGAGCTATAA CGCTCCA CTA TGGAGCG AGTAATAGTTGGCTA Shew_2602 3068666 - 3068367 - | hypothetical protein Shew_2603 3069088 - 3068762 - | hypothetical protein Shew_2604 3070024 - 3069224 - | restriction endonuclease TERM 2997 3070192 - 3070181 - R 82 -7.2 -4.60487 | opp_overlap 3070181, overlap 3070171 TACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 2998 3070181 - 3070192 + r 72 -7.2 -4.09511 | opp_overlap 3070171 3070181 TACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 2999 3070860 - 3070829 - R 77 -6.6 -4.47888 | GGAAGCCAAAAACAA CAATGCCCAACCCC ATCC AAGGTCGAGCATTA ACATTATTCAGAATT Shew_2605 3072132 - 3070906 - | putative phenylacetate-coenzyme A ligase TERM 3000 3071871 - 3071881 + g 73 -8.2 -4.18934 | GTGACTGAAAGATGC GCCC GCT GGGC TTTCTTGGCGTCATG Shew_2606 3072960 - 3072142 - | ABC transporter-related protein TERM 3001 3073012 - 3072982 - R 74 -11.1 -2.80612 | overlap 3072981 TCCAAGGTCAAGAAG CGGGCCGGGCAAG ATGGG CTTACCCGGCGCA GGGAAAAGAGATTAG Shew_2607 3074268 - 3073024 - | putative branched-chain amino acid ABC transporter Shew_2608 3075465 - 3074392 - | inner-membrane translocator Shew_2609 3076419 - 3075526 - | inner-membrane translocator Shew_2610 3078383 - 3076416 - | AMP-dependent synthetase and ligase TERM 3002 3077745 - 3077727 - G 77 -9.6 -3.87869 | GCAATGGTCGATAAA CTTACTGC CCT GCAGCAAG ACAATCTTAGGTTTA Shew_2611 3079180 - 3078383 - | ABC transporter-related protein TERM 3003 3079290 - 3079270 - R 100 -9 -5.4477 | gap 1, overlap 3079271 3079272 AAACGGGTAAAAAAA GCGGGGAGG AGGC CCTCCCC-C AAGAGCACTTACAAG TERM 3004 3079290 - 3079271 - R 77 -9.2 -3.85235 | overlap 3079270 3079272 AACGGGTAAAAAAAG CGGGGAGG AGGC CCTCCCCC AAGAGCACTTACAAG TERM 3005 3079289 - 3079272 - R 82 -12.7 -2.90056 | overlap 3079270 3079271 ACGGGTAAAAAAAGC GGGGAGG AGGC CCTCCCC CAAGAGCACTTACAA Shew_2612 3080339 - 3079299 - | hypothetical protein Shew_2613 3080597 - 3084097 + | integral membrane sensor hybrid histidine kinase TERM 3006 3084137 - 3084105 - T 84 -9.7 -4.23781 | opp_overlap 3084105, overlap 3084100 CCGATTAAAAGCAAA CGCCCCGCTTCAG ACATAAA CCGCTGCGGGGCG TTTTTATTAAATGTG TERM 3007 3084105 - 3084137 + T 86 -7.5 -5.12068 | opp_overlap 3084105 3084100 CCGATTAAAAGCAAA CGCCCCGCTTCAG ACATAAA CCGCTGCGGGGCG TTTTTATTAAATGTG Shew_2614 3084844 - 3084176 - | two component LuxR family transcriptional regulator Shew_2615 3085347 - 3086471 + | patatin Shew_2616 3087169 - 3086492 - | GDSL family lipase Shew_2617 3089189 - 3087240 - | potassium efflux system protein TERM 3008 3087378 - 3087332 - G 75 -12.8 -3.0894 | opp_overlap 3087377 GAATGAGCCAGTCAA GCTCAGGGCTTTCCACCTCGGC GCC GCTGCGGCGCACCGCCCTGAGC TCCACCCTGAGCTTG TERM 3009 3087958 - 3087925 - G 70 -5.2 -4.36914 | overlap 3087926 TCCGTCTTCATAAAA CGGGCTATGGTCTG CCCCAC CCGGCCATAACCCA GAATCAACACCAGGT TERM 3010 3088470 - 3088458 - G 79 -10.5 -3.87373 | CATACCGGCGATAAA GGCGC CCA GCGCC ATGGAGAGCCCCAGC TERM 3011 3088929 - 3088913 - G 70 -10.1 -3.51934 | overlap 3088911 CGGCGGTGACAAACA CCTGGGC GCT ACCCAGG CCAAATACGGTGCGG Shew_2618 3089489 - 3090376 + | diguanylate cyclase Shew_2619 3091973 - 3090549 - | tRNA(Ile)-lysidine synthetase dnaE 3095447 - 3091974 - | DNA polymerase III subunit alpha TERM 3012 3093903 - 3093917 + g 77 -11.4 -3.55622 | CGTCGGCGCGATCAC CACGCC CCC GGCGTG TTTACCCGCGTTACG TERM 3013 3095606 - 3095586 - R 73 -10.3 -3.01912 | opp_overlap 3095602, overlap 3095571 CCAGAGTCACACACA GGGCACCAG TCA CAGGCGCCC CCGCGAGGGCGGTTT Shew_2621 3096246 - 3095620 - | ribonuclease H lpxB 3097394 - 3096246 - | lipid-A-disaccharide synthase TERM 3014 3097441 - 3097426 - R 100 -6.8 -5.80951 | opp_overlap 3097421 3097426 ACTGAAAATAAAAAA GCCCGT GAAC ACGAGC TTTTCTTCGATAGCT TERM 3015 3097426 - 3097441 + r 71 -4.6 -4.68384 | opp_overlap 3097426, overlap 3097421 ACTGAAAATAAAAAA GCCCGT GAAC ACGAGC TTTTCTTCGATAGCT Shew_2623 3098257 - 3097490 - | UDP-N-acetylglucosamine acyltransferase TERM 3016 3098117 - 3098092 - G 85 -8.4 -4.74504 | overlap 3098114 AGGCGAACTGAAAAA TACGGTTACC CTTGCC GATAACCGTA GGGCCCTTGACCACC Shew_2624 3098715 - 3098254 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Shew_2625 3099771 - 3098746 - | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase TERM 3017 3099613 - 3099595 - G 85 -14.6 -3.51232 | opp_overlap 3099594 3099593 3099597, overlap 3099591 CTTGGGCGAAAGCAA CACGGCAG AGG CTGCCGTG CCTTCTAACTGACTC Shew_2626 3100272 - 3099778 - | outer membrane chaperone Skp (OmpH) Shew_2627 3102825 - 3100342 - | surface antigen (D15) Shew_2628 3104218 - 3102857 - | putative membrane-associated zinc metalloprotease Shew_2629 3105476 - 3104289 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 3018 3104774 - 3104796 + g 71 -9.1 -3.75738 | opp_overlap 3104773 CATTAAACAGCCAAC GGGCCTCGA TATAC TCGAGTCCC TTGTTCATCATACTG Shew_2630 3106264 - 3105479 - | phosphatidate cytidylyltransferase TERM 3019 3106303 - 3106279 - R 77 -3.5 -5.2853 | overlap 3106281 CAGGGAAAAAGAAAA TGGCTCCCATC ACC AATGGGATCAA CCATACTGCTGTTAT Shew_2631 3107148 - 3106357 - | undecaprenyl diphosphate synthase TERM 3020 3106413 - 3106403 - G 77 -8.2 -4.27316 | CCCGTCAATCCAAAA CGGC GCT GCCG GGTAGCAAATACGGC TERM 3021 3106882 - 3106864 - G 73 -5.3 -4.66264 | gap 1, opp_overlap 3106866 3106872 3106876, overlap 3106867 TAAAACGGTGAAAAA CAG-CTCC ATCA GGAGGCTG ACTTCTTTCTCGGGT TERM 3022 3107206 - 3107168 - R 71 -4.7 -4.63542 | gap 2, overlap 3107175 TACAACCCTTAAAAA TAGCAAACGCCGTGTAG TATACCC CTACACGGCG--TGCGA ACTCTAGTAACGAAA TERM 3023 3107201 - 3107175 - R 100 -13.8 -4.13748 | overlap 3107168 CTTAAAAATAGCAAA CGCCGTGTAG TATACCC CTACACGGCG TGCGAACTCTAGTAA Shew_2632 3107787 - 3107230 - | ribosome recycling factor pyrH 3108566 - 3107823 - | uridylate kinase TERM 3024 3108634 - 3108623 - R 100 -2.2 -6.06529 | gap 1, overlap 3108624 TATATAGAAAAAAAA GC-GC TGT GCAGC AATCTAATTGGCATA TERM 3025 3108678 - 3108651 - R 90 -12.8 -3.3344 | opp_overlap 3108656, overlap 3108656 ATCTAATTGGCATAA TAAAACCGCAGC GAAT GCTGCGGTTTTT AGGGTATCTTACAAC TERM 3026 3108656 - 3108673 + r 100 -12.7 -4.6644 | opp_overlap 3108651 3108656 ATTGGCATAATAAAA CCGCAGC GAAT GCTGCGG TTTTTAGGGTATCTT TERM 3027 3108673 - 3108656 - R 100 -12.7 -4.77567 | opp_overlap 3108656, overlap 3108651 ATTGGCATAATAAAA CCGCAGC GAAT GCTGCGG TTTTTAGGGTATCTT tsf 3109548 - 3108700 - | elongation factor Ts TERM 3028 3109613 - 3109594 - R 100 -15 -5.12707 | opp_overlap 3109596 TCAAATGTGAAAAAA CAGGGGCC TTAG GGCCCCTG TTCACCAATTATCTA TERM 3029 3109596 - 3109611 + r 81 -11.8 -3.04799 | opp_overlap 3109594 AAATGTGAAAAAACA GGGGCC TTAG GGCCCC TGTTCACCAATTATC rpsB 3110396 - 3109668 - | 30S ribosomal protein S2 TERM 3030 3110432 - 3110414 - H 73 -3 -5.0538 | overlap 3110415 TTTTACCTTAAAAAA TTGGGGGT TAG ACCTCCAC GCATCCCATATCTCC Shew_2636 3110676 - 3111473 + | methionine aminopeptidase TERM 3031 3111509 - 3111526 + F 82 -12.7 -2.82015 | opp_overlap 3111512 TGGTTTACTCCCATA GCAGGCC ATCC GGCCTGC TATGCTCGCTCTGAG Shew_2637 3111555 - 3114128 + | PII uridylyl-transferase dapD 3114164 - 3114988 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 3032 3115015 - 3115032 + F 100 -11.3 -5.1287 | opp_overlap 3115015 CCCTAACCTTAAAAA GCCAGGT ATTC ACCTGGC TTTTTTACCTCTAAA TERM 3033 3115032 - 3115015 - f 100 -11.3 -4.66833 | opp_overlap 3115015 CCCTAACCTTAAAAA GCCAGGT ATTC ACCTGGC TTTTTTACCTCTAAA Shew_2639 3115199 - 3115543 + | hypothetical protein TERM 3034 3115619 - 3115584 - T 100 -13.6 -4.11751 | opp_overlap 3115588 3115595, overlap 3115585 3115588 3115595 ACCAACTGCTTAAAA CCAATAAAAAAGAGCC TACA GGCTCTTTTTTATTAA CTATAAATTATAGGT TERM 3035 3115618 - 3115585 - T 89 -14.9 -3.06569 | opp_overlap 3115588 3115595, overlap 3115584 3115588 3115595 CCAACTGCTTAAAAC CAATAAAAAAGAGCC TACA GGCTCTTTTTTATTA ACTATAAATTATAGG TERM 3036 3115615 - 3115588 - T 100 -14.4 -3.67175 | opp_overlap 3115588 3115595, overlap 3115585 3115584 3115595 ACTGCTTAAAACCAA TAAAAAAGAGCC TACA GGCTCTTTTTTA TTAACTATAAATTAT TERM 3037 3115588 - 3115615 + T 95 -14.4 -3.1479 | opp_overlap 3115585 3115584 3115588 3115595, overlap 3115595 ACTGCTTAAAACCAA TAAAAAAGAGCC TACA GGCTCTTTTTTA TTAACTATAAATTAT TERM 3038 3115595 - 3115608 + T 100 -8.1 -5.49234 | opp_overlap 3115588 3115585 3115584 3115595, overlap 3115588 AAAACCAATAAAAAA GAGCC TACA GGCTC TTTTTTATTAACTAT TERM 3039 3115608 - 3115595 - T 100 -8.1 -5.61689 | opp_overlap 3115595 3115588, overlap 3115588 3115585 3115584 AAAACCAATAAAAAA GAGCC TACA GGCTC TTTTTTATTAACTAT purU 3116485 - 3115652 - | formyltetrahydrofolate deformylase Shew_2641 3117991 - 3116519 - | PTS system, glucose-like IIB subunint TERM 3040 3116822 - 3116810 - GR 75 -9.1 -3.59979 | GGTCTTGAGGTTAAA CGCCA AGA TGGCG CCGCGAAACACCAGA TERM 3041 3116950 - 3116936 - GR 70 -6.4 -4.15453 | overlap 3116938 TAAGCCATGGGAAAA CACCAC GCT ATGGTG GATATCCAGCGAAAT TERM 3042 3117859 - 3117825 - GR 84 -6.5 -4.86731 | gap 1, overlap 3117850 3117851 3117853 TCCGCCGAAATAAAA GGAATG-GGATTGGTC GCAA GACCAATCATCACCCC CGCAGCGGGCAAGAT Shew_2642 3118407 - 3117943 - | flavodoxin TERM 3043 3118698 - 3118740 + r 83 -12.6 -3.06796 | opp_overlap 3118698, overlap 3118704 GCGCTGGTCAAGTAA CCCTAAGGCCCGAACTTCGA GTA TCGAGTCACGGGCCTTTGGG TTGGGTGGCATAAAC TERM 3044 3118740 - 3118698 - R 100 -14.3 -3.33696 | opp_overlap 3118698 3118704 GCGCTGGTCAAGTAA CCCTAAGGCCCG-AACTTCGA GTA TCGA-GTCACGGGCCTTTGGG TTGGGTGGCATAAAC Shew_2643 3119602 - 3118781 - | pseudouridylate synthase Shew_2644 3119930 - 3119613 - | hypothetical protein Shew_2645 3120114 - 3121127 + | hypothetical protein Shew_2646 3121124 - 3121513 + | hypothetical protein TERM 3045 3121638 - 3121654 + T 71 -3.7 -4.77036 | opp_overlap 3121634, overlap 3121639 GCTTGTTAAAACGTC CGATAAC GGT GTTATCA TTTTTGATAGTAGAA TERM 3046 3121811 - 3121836 + T 72 -8.2 -3.89448 | opp_overlap 3121812, overlap 3121806 3121806 3121812 CCCAGATAAAGAAAA AGCGCGGCTC AATTAA GAGTCGCGCC TTCTATCTTTTTCGC TERM 3047 3121835 - 3121812 - T 100 -9.5 -5.42975 | opp_overlap 3121812 3121811 3121806 3121806 CCAGATAAAGAAAAA GCGCGGCTC AATTAA GAGTCGCGC CTTCTATCTTTTTCG TERM 3048 3121812 - 3121835 + T 80 -11.7 -2.92584 | opp_overlap 3121812, overlap 3121811 3121806 3121806 CCAGATAAAGAAAAA GCGCGGCTC AATTAA GAGTCGCGC CTTCTATCTTTTTCG TERM 3049 3122276 - 3122264 - T 71 -2 -5.09895 | TAGGGATGGAAAAAA TTCT GCTTA AGAA GTCACATTATTGCCA TERM 3050 3122526 - 3122545 + T 100 -13.6 -4.14193 | opp_overlap 3122526 AGCAGAAAAAGAAAA GGCGCACT ATAA AGTGCGCC TTTCTATACTCTTGT TERM 3051 3122545 - 3122526 - T 100 -13.6 -5.3658 | opp_overlap 3122526 AGCAGAAAAAGAAAA GGCGCACT ATAA AGTGCGCC TTTCTATACTCTTGT Shew_2647 3123563 - 3123264 - | hypothetical protein Shew_2648 3124206 - 3123556 - | GCN5-related N-acetyltransferase Shew_2649 3124347 - 3124577 + | hypothetical protein TERM 3052 3124685 - 3124705 + T 100 -13.3 -4.7254 | opp_overlap 3124685 GGCTTATACAAAAAA GGCAAGCCG AAC TGGCTTGCC TTTTTACTAAAGAGT TERM 3053 3124705 - 3124685 - T 100 -12.6 -5.36441 | opp_overlap 3124685 GGCTTATACAAAAAA GGCAAGCC GAACT GGCTTGCC TTTTTACTAAAGAGT Shew_2650 3125098 - 3124727 - | hypothetical protein Shew_2651 3125247 - 3125582 + | hypothetical protein TERM 3054 3126064 - 3126094 + G 71 -11.7 -3.09933 | opp_overlap 3126079, overlap 3126074 CGATGAGCTGCAGAT GGCGGCGGCCACC AAGGC GGAGTTCGCCGCC TTAGATGAATTGAGC Shew_2652 3125582 - 3126355 + | hypothetical protein Shew_2653 3127062 - 3126400 - | SecY interacting protein Syd queF 3127090 - 3127980 + | 7-cyano-7-deazaguanine reductase TERM 3055 3128001 - 3128017 + F 100 -10.8 -5.18726 | TGGATGAAGGATTGA GCCCGC ATTAA GCGGGC TTTTTGTTATAGAGA Shew_2655 3128303 - 3129493 + | hypothetical protein TERM 3056 3129558 - 3129595 + T 100 -15.7 -5.03314 | gap 1, opp_overlap 3129567 GTAACAACAGCTTTT GCGGGAAAACCATAGGTG CCA CGCCT-TGGTCTTCCCGC TTTTTTAGCGGTAAA Shew_2656 3130606 - 3129695 - | 4'-phosphopantetheinyl transferase TERM 3057 3129901 - 3129887 - G 83 -11.4 -3.96148 | TTCTTTGACGAGAAA CAGGCG CGC CGCCTG CTCGAGCCGGGCTTG TERM 3058 3130283 - 3130266 - G 84 -2.7 -5.40072 | gap 1 CTGCGCGCAAAAAAA GCCT-TAC TGA GCACAGGC TTACCCTTATCCAGG Shew_2657 3132051 - 3130786 - | hypothetical protein Shew_2658 3132778 - 3132095 - | ABC transporter-related protein Shew_2659 3134065 - 3132800 - | hypothetical protein Shew_2660 3135284 - 3134052 - | hypothetical protein TERM 3059 3134601 - 3134585 - G 73 -8 -4.12037 | CATAAAGATTAGAAA GCCTCT CGGTC AGAGGC GCCACCTCATCTAAG Shew_2661 3136206 - 3135394 - | hypothetical protein Shew_2662 3136702 - 3136343 - | cupin 2 domain-containing protein TERM 3060 3136854 - 3136824 - R 100 -16.4 -3.29263 | opp_overlap 3136831, overlap 3136831 ATAGCGCTGGCACAA GAAAAAAGGAGAAC TTA GTTCTCCTTTTTCC AGCTCATTTTCAATG TERM 3061 3136847 - 3136831 - R 100 -10.9 -5.55769 | opp_overlap 3136831, overlap 3136824 TGGCACAAGAAAAAA GGAGAAC TTA GTTCTCC TTTTTCCAGCTCATT TERM 3062 3136831 - 3136847 + r 95 -10.9 -4.60889 | opp_overlap 3136831 3136824 TGGCACAAGAAAAAA GGAGAAC TTA GTTCTCC TTTTTCCAGCTCATT Shew_2663 3138964 - 3136916 - | elongation factor G Shew_2664 3139363 - 3140217 + | transcriptional regulator, putative TERM 3063 3141314 - 3141279 - g 71 -11 -3.05816 | opp_overlap 3141293, overlap 3141262 TTAGGGCTGATGGAA GCCCACGGCACGGGCA CGGC CGCCGGTGACGTGGCC GAGTTTAACGGCCTC TERM 3064 3143722 - 3143706 - g 78 -5.7 -4.75309 | overlap 3143710 CCAAACCCAATAAAA GCCACTG TGC CTGCGGC CGCGCCAGCAGTTAC TERM 3065 3143953 - 3143938 - g 80 -5.4 -5.00616 | overlap 3143939 TGGTGGCCGAAAAAA CCGGTT ACCC AACCGA GATGCTGGCCCTTGA TERM 3066 3147208 - 3147164 - g 86 -6.9 -5.16237 | overlap 3147166 AAGCTCAGTAAAAAA GCCTGATGCGGATGAGGTGCA CGT TGCACAGCATCCGCTGCCGCC TGTCACCTTAACGCG Shew_2665 3140217 - 3148076 + | beta-ketoacyl synthase TERM 3067 3148297 - 3148319 + G 72 -9.8 -3.6682 | overlap 3148300 TGAGCAGGCAGTGAG CTGGGTCGCC ACA GGCGATCTGG TTTGCCTGCATGGCG TERM 3068 3149922 - 3149945 + G 70 -9.5 -3.52906 | opp_overlap 3149932, overlap 3149920 AGTCGCTCATCCAGA GCGCAACCC ATCAGG GGGCTGCGC TATTTGTCGAGGTCG Shew_2666 3148073 - 3150223 + | omega-3 polyunsaturated fatty acid synthase PfaB TERM 3069 3150753 - 3150709 - g 70 -2.9 -4.84017 | gap 2, overlap 3150672 3150669 3150710 3150720 AAGGCGGTAGAAAAA GCC-CTTAAGCAGAAG-CTGG CCTGC CCAGACTTCAGCCTGAGCGAC TATAACGCCCATAGT TERM 3070 3150950 - 3150977 + G 82 -8.2 -4.55697 | overlap 3150951 AGGCCGATCTCATGT TGGCGGGCGCCG TCTC CGGCGCCGACCC TTTCTTTATCAACAT TERM 3071 3150951 - 3150976 + G 74 -11.7 -3.32695 | overlap 3150950 GGCCGATCTCATGTT GGCGGGCGCCG TCTC CGGCGCCGACC CTTTCTTTATCAACA TERM 3072 3152556 - 3152540 - g 75 -10.1 -3.74693 | CCTCATCCCACCAAA GCCAGCG TGG CGCTAGC GCCTATGGCAAGATA Shew_2667 3150223 - 3156009 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ TERM 3073 3156121 - 3156069 - f 77 -4.8 -4.91285 | gap 1, opp_overlap 3156086, overlap 3156071 AGCAACATAAGAAAA TCGGTCGATACGGG-TCATGCCT TATAAAAC AGGCATGTTCCCGGGTCGCCCAA GACGAAAAAGGTCTT Shew_2668 3156144 - 3157781 + | 2-nitropropane dioxygenase, NPD TERM 3074 3157848 - 3157833 - T 100 -10.4 -5.28176 | opp_overlap 3157833 TGTATCGACAAAAAA GCCACC TCAA GGTGGC TTTTTTATCGGCTTA TERM 3075 3157833 - 3157848 + T 100 -10.4 -5.27923 | opp_overlap 3157833 TGTATCGACAAAAAA GCCACC TCAA GGTGGC TTTTTTATCGGCTTA Shew_2669 3160238 - 3157890 - | penicillin amidase TERM 3076 3160039 - 3160002 - G 75 -2.6 -5.05782 | gap 1, opp_overlap 3160037, overlap 3160003 3160036 ATCCATCTGAAAAAA CCTGTCCTGACCATGGG CAAAT CCCAGGGTAAAGGC-GG CATCCTGACGATTCT Shew_2670 3161273 - 3160362 - | LysR family transcriptional regulator TERM 3077 3161491 - 3161456 - R 74 -10.4 -3.1875 | gap 1 CAGACGGCAACTTAA GTGGGGGGTGACAGCAG ATC CTGCGGCCAACCCC-AC TCCTCACGATGCTCG Shew_2671 3162494 - 3161532 - | alpha/beta hydrolase domain-containing protein TERM 3078 3162640 - 3162607 - R 95 -14.7 -3.23335 | gap 1, opp_overlap 3162606 3162605, overlap 3162611 GCTGATAAAGATACA GAAATGGAGG-CGCCT ATT AGGCGACCTCCATCCC AATTTGCGTCTATTG TERM 3079 3162636 - 3162611 - R 100 -14.1 -4.25527 | gap 1, opp_overlap 3162606 3162605, overlap 3162607 ATAAAGATACAGAAA TGGAGG-CGCCT ATT AGGCGACCTCCA TCCCAATTTGCGTCT Shew_2672 3163445 - 3162660 - | carnitinyl-CoA dehydratase caiC 3165059 - 3163503 - | putative crotonobetaine/carnitine-CoA ligase TERM 3080 3163635 - 3163617 - G 70 -5.2 -4.36914 | opp_overlap 3163601 GTTGGCGCTACAAAA CGCCAAGA TCT CCTCGACG GTCAGTGACATGCCG TERM 3081 3164204 - 3164181 - G 70 -3.2 -4.76041 | gap 1, opp_overlap 3164189 GATATGCATGAAAAA CAGCA-TATCC CGC AGACAGTGCTG GTCTTCCCCCTCGGC Shew_2674 3166294 - 3165068 - | crotonobetainyl-CoA:carnitine CoA-transferase Shew_2675 3167591 - 3166455 - | crotonobetainyl-CoA dehydrogenase Shew_2676 3169187 - 3167643 - | L-carnitine/gamma-butyrobetaine antiporter TERM 3082 3168892 - 3168908 + g 72 -3.6 -4.72272 | opp_overlap 3168884 AAGAAGATCCAGCTT CCTGTG CTGAA CTCAGG TTTTTCCTGACCCAG TERM 3083 3169525 - 3169514 - H 74 -2.2 -5.29782 | CACAGTCACAAAAAA CATG TGCT CACG ATATCAAATTAGAAA Shew_2677 3170094 - 3170867 + | putative electron transfer flavoprotein FixA Shew_2678 3170882 - 3171823 + | electron transfer flavoprotein, alpha subunit TERM 3084 3171867 - 3171833 - f 83 -11.2 -3.2794 | GGCTAGGCAGATCAA GGCGGAGAGCCGGGCC TAG GGCTCGGCCTCCCTCC CCCAACACAAGAGTG TERM 3085 3172932 - 3172909 - g 71 -11 -3.13403 | overlap 3172907 GCGCGCCCAGCAAGA CTTCTCAGCC CAGG GGCTGAGCAG CTACCAGAGCCTGCT Shew_2679 3171890 - 3173182 + | FAD dependent oxidoreductase Shew_2680 3173179 - 3173466 + | putative ferredoxin Shew_2681 3173838 - 3175154 + | general substrate transporter Shew_2682 3175416 - 3176543 + | hypothetical protein TERM 3086 3176551 - 3176602 + F 89 -11.8 -3.60627 | gap 1, overlap 3176544 3176552 ATTTCTAACCGCCAG TGTGGTCTATCGACTATCGGACG CCACCCT CATTCGATAGTCGAT-GACCACC TTTAGGGTCGGCTCC TERM 3087 3176552 - 3176601 + F 93 -15.3 -2.76162 | gap 1, overlap 3176544 3176551 TTTCTAACCGCCAGT GTGGTCTATCGACTATCGGACG CCACCCT CATTCGATAGTCGAT-GACCAC CTTTAGGGTCGGCTC TERM 3088 3176655 - 3176674 + F 100 -9.3 -5.60993 | ATAGCTTTTGGCCCA GCCTTCG CCCCGT CGAAGGC TTTTTTTCTCAGCCG Shew_2683 3176734 - 3176985 + | hypothetical protein Shew_2684 3177228 - 3178094 + | hypothetical protein TERM 3089 3178510 - 3178484 - T 76 -10.9 -3.05963 | opp_overlap 3178488 3178500, overlap 3178488 ATCCTCAGGCTAACA TCAATCGCCAG ACGCG CTGGCGATTGT CTCGGCAAGGCAGAG TERM 3090 3178488 - 3178506 + T 77 -10.3 -3.48276 | opp_overlap 3178484 3178488, overlap 3178500 TCAGGCTAACATCAA TCGCCAG ACGCG CTGGCGA TTGTCTCGGCAAGGC TERM 3091 3178506 - 3178488 - T 76 -10.3 -3.37245 | opp_overlap 3178488 3178500, overlap 3178484 TCAGGCTAACATCAA TCGCCAG ACGCG CTGGCGA TTGTCTCGGCAAGGC Shew_2685 3179114 - 3178527 - | putative lipoprotein TERM 3092 3179564 - 3179522 - R 75 -10.7 -2.95448 | gap 2, opp_overlap 3179533, overlap 3179517 TGAAAGTTAATCAGA CTCGCC-TG-CAATCGCCAGT CAG ACTGGCGATTGCCTTGGCCAG ATAGCCGCTACTTAT TERM 3093 3179533 - 3179551 + r 91 -13.2 -3.17194 | opp_overlap 3179522 3179517 CAGACTCGCCTGCAA TCGCCAGT CAG ACTGGCGA TTGCCTTGGCCAGAT Shew_2686 3180159 - 3179572 - | putative lipoprotein TERM 3094 3180124 - 3180137 + g 77 -8.1 -4.2558 | TGTTACCAAGATAGC CGCCA TAAA TGGCG TTTTCATCGACAATG TERM 3095 3180504 - 3180484 - H 80 -11.1 -3.27704 | ACTTGGTAAATCCAA GGCGCGACA TTT TGTCTCGCC CACCACTTAATTCAG Shew_2687 3180622 - 3181428 + | hypothetical protein TERM 3096 3181505 - 3181486 - T 100 -15 -4.8048 | opp_overlap 3181486 TCCTTACAGCAAAAA GGGCTGGC ACAT GCCAGCCC TACCTTAAACACTTC TERM 3097 3181486 - 3181505 + T 89 -15 -2.53213 | opp_overlap 3181486 TCCTTACAGCAAAAA GGGCTGGC ACAT GCCAGCCC TACCTTAAACACTTC Shew_2688 3182889 - 3181552 - | amidohydrolase Shew_2689 3183112 - 3183957 + | sulfotransferase TERM 3098 3183969 - 3183998 + T 86 -12.3 -3.16475 | opp_overlap 3183976, overlap 3183976 CTAGGATTTACCCAC AAAAAAACGCAGC CTGG GCTGCGTTTTTTA TTACCTATCTAGCTG TERM 3099 3183976 - 3183991 + T 100 -10.4 -5.49234 | opp_overlap 3183976, overlap 3183969 TTACCCACAAAAAAA CGCAGC CTGG GCTGCG TTTTTTATTACCTAT TERM 3100 3183991 - 3183976 - T 100 -10.4 -5.64274 | opp_overlap 3183976 3183969 TTACCCACAAAAAAA CGCAGC CTGG GCTGCG TTTTTTATTACCTAT Shew_2690 3186465 - 3184027 - | TonB-dependent receptor, plug TERM 3101 3186647 - 3186668 + r 72 -8.7 -3.5947 | opp_overlap 3186649, overlap 3186649 ACTTAAAGCGCAAAA AATGCAGCC CTGG GGCTGCATC TTATCTATCGACATT TERM 3102 3186649 - 3186666 + r 83 -11.3 -3.37198 | opp_overlap 3186649, overlap 3186647 TTAAAGCGCAAAAAA TGCAGCC CTGG GGCTGCA TCTTATCTATCGACA TERM 3103 3186666 - 3186649 - R 100 -11.3 -5.12707 | opp_overlap 3186647 3186649 TTAAAGCGCAAAAAA TGCAGCC CTGG GGCTGCA TCTTATCTATCGACA Shew_2691 3187310 - 3186780 - | OmpA domain-containing protein TERM 3104 3187471 - 3187456 - R 100 -9 -5.26316 | opp_overlap 3187456 CCAGGGCATAAAAAA TGCAGC CTGG GCTGCA TTTTTCTCATACTTG TERM 3105 3187456 - 3187471 + r 93 -9 -4.94902 | opp_overlap 3187456 CCAGGGCATAAAAAA TGCAGC CTGG GCTGCA TTTTTCTCATACTTG Shew_2692 3188341 - 3187556 - | cytochrome B561 Shew_2693 3189448 - 3188495 - | hypothetical protein Shew_2694 3189711 - 3190028 + | peptidase Shew_2695 3190051 - 3190731 + | two component transcriptional regulator Shew_2696 3190749 - 3192203 + | integral membrane sensor signal transduction histidine kinase TERM 3106 3193357 - 3193332 - g 72 -10.4 -3.47227 | overlap 3193350 3193351 GGCCAAGCACTATAA CGCGGCGC AGGTTCAAAA GCGCCGCG AGCAGAACTTCAGCC Shew_2697 3192364 - 3193740 + | hypothetical protein TERM 3107 3193839 - 3193821 - T 85 -11.7 -3.30212 | opp_overlap 3193820 3193817 3193816 AAGAGCAAGCATTAA GGCGGTG GCAAT CACCGCC GTCACTTTTCTCGAA Shew_2698 3194420 - 3193908 - | hypothetical protein Shew_2699 3195220 - 3194642 - | cyclic nucleotide-binding protein Shew_2700 3195374 - 3195763 + | antibiotic biosynthesis monooxygenase TERM 3108 3195789 - 3195826 + T 100 -15.1 -4.78764 | opp_overlap 3195790 3195792 3195800, overlap 3195790 3195800 AATCCTCGCCTCAAG AGATGAAAAAACGCAGC CTAG GCTGCGTTTTTTTATCG TTTTTCGTGGCTTTC TERM 3109 3195790 - 3195825 + T 100 -18.6 -3.46174 | opp_overlap 3195790 3195792 3195800, overlap 3195789 3195800 ATCCTCGCCTCAAGA GATGAAAAAACGCAGC CTAG GCTGCGTTTTTTTATC GTTTTTCGTGGCTTT TERM 3110 3195825 - 3195790 - T 100 -16.4 -3.01791 | opp_overlap 3195790 3195789 3195800, overlap 3195792 3195800 ATCCTCGCCTCAAGA GATGAAAAAACGCAGC CTAG GCTGCGTTTTTTTATC GTTTTTCGTGGCTTT TERM 3111 3195823 - 3195792 - T 86 -13.2 -3.06696 | opp_overlap 3195790 3195789 3195800, overlap 3195790 3195800 CCTCGCCTCAAGAGA TGAAAAAACGCAGC CTAG GCTGCGTTTTTTTA TCGTTTTTCGTGGCT TERM 3112 3195815 - 3195800 - T 100 -10.4 -5.27399 | opp_overlap 3195800 3195790 3195789, overlap 3195792 3195790 CAAGAGATGAAAAAA CGCAGC CTAG GCTGCG TTTTTTTATCGTTTT TERM 3113 3195800 - 3195815 + T 100 -10.4 -5.77632 | opp_overlap 3195792 3195790 3195800, overlap 3195790 3195789 CAAGAGATGAAAAAA CGCAGC CTAG GCTGCG TTTTTTTATCGTTTT Shew_2701 3196913 - 3195846 - | hypothetical protein Shew_2702 3198260 - 3197490 - | hypothetical protein TERM 3114 3199584 - 3199605 + G 84 -6.5 -5.00616 | opp_overlap 3199583 GAACACGGTTAAACG GGACAGAGC TAAA GCCTTGTCC TTTTTTCAACAAGCA TERM 3115 3200026 - 3200016 - g 73 -5.4 -4.56775 | AGGCGTGGCTAAAAA CATG CAA CATG GCCTTGAACTCTACT Shew_2703 3198442 - 3200523 + | Sel1 domain-containing protein TERM 3116 3200534 - 3200562 + T 89 -14.7 -3.02144 | opp_overlap 3200540, overlap 3200540 TATGATTGCCCCATA AAAAAACGCAGCC ATT GGCTGCGTTTTTG TCTTAGAAAGACTAA TERM 3117 3200540 - 3200556 + T 100 -13.7 -5.0916 | opp_overlap 3200540, overlap 3200534 TGCCCCATAAAAAAA CGCAGCC ATT GGCTGCG TTTTTGTCTTAGAAA TERM 3118 3200556 - 3200540 - T 100 -13.7 -5.60993 | opp_overlap 3200540 3200534 TGCCCCATAAAAAAA CGCAGCC ATT GGCTGCG TTTTTGTCTTAGAAA Shew_2704 3201798 - 3200581 - | Na(+)-translocating NADH-quinone reductase subunit F Shew_2705 3202448 - 3201840 - | Na(+)-translocating NADH-quinone reductase subunit E TERM 3119 3202132 - 3202106 - G 71 -11.6 -3.14051 | opp_overlap 3202101 3202106, overlap 3202104 GTAGCGGTAGGAAGA TCCCCAGGCTGT CAT ACAGGCTGGGAA TATACTTATCCAGAA Shew_2706 3203076 - 3202453 - | Na(+)-translocating NADH-quinone reductase subunit D Shew_2707 3203848 - 3203078 - | Na(+)-translocating NADH-quinone reductase subunit C Shew_2708 3205171 - 3203957 - | Na(+)-translocating NADH-quinone reductase subunit B Shew_2709 3206541 - 3205171 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 3120 3206951 - 3206926 - H 87 -7.7 -5.01811 | TCAGCAAATTAAAAA CATTTAGACAT CTAG AAGTCTAAATG CCATGGTCATTTTTC TERM 3121 3207750 - 3207768 + G 77 -8 -4.258 | overlap 3207738 TGTGGTCTATACCCA GGCCTTCG GTC CGGCGGCC TTTATTGGTCGCTGC Shew_2710 3207004 - 3208293 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 3122 3208418 - 3208361 - f 72 -5.6 -4.59089 | gap 2, opp_overlap 3208368, overlap 3208362 3208364 3208366 3208368 CAAGCCAGAAAGAAA CCAGATATCGGCCCCAA-G-CACCGCCC TACG AGGCGCTGTCGTTGGGGCCGATTTTTTA TCTCCACCTTGAGTC TERM 3123 3208415 - 3208364 - f 72 -9.5 -3.22499 | gap 2, opp_overlap 3208368, overlap 3208362 3208361 3208366 3208368 GCCAGAAAGAAACCA GATATCGGCCCCAA-G-CACCGCCC TACG AGGCGCTGTCGTTGGGGCCGATTTT TTATCTCCACCTTGA TERM 3124 3208413 - 3208366 - f 83 -12.1 -3.16414 | gap 2, opp_overlap 3208368, overlap 3208364 3208362 3208361 3208368 CAGAAAGAAACCAGA TATCGGCCCCAA-G-CACCGCCC TACG AGGCGCTGTCGTTGGGGCCGATT TTTTATCTCCACCTT TERM 3125 3208368 - 3208411 + F 100 -14.6 -5.36441 | gap 1, opp_overlap 3208368 3208366 3208364 3208362 3208361 GAAAGAAACCAGATA TCGGCCCCAAGCACCGC-CCT ACG AGGCGCTGTCGTTGGGGCCGA TTTTTTATCTCCACC TERM 3126 3208411 - 3208368 - f 89 -14.7 -3.12261 | gap 2, opp_overlap 3208368, overlap 3208366 3208364 3208362 3208361 GAAAGAAACCAGATA TCGGCCCCAA-G-CACCGCCC TACG AGGCGCTGTCGTTGGGGCCGA TTTTTTATCTCCACC Shew_2711 3208607 - 3209395 + | AraC family transcriptional regulator Shew_2712 3209487 - 3210416 + | peptidase S15 Shew_2713 3210601 - 3211713 + | metal dependent phosphohydrolase TERM 3127 3211877 - 3211849 - T 100 -9.6 -5.31072 | gap 1, opp_overlap 3211849 AGAAGATAAGAAAAA GGCCTGCCAA-GC CAGG GCGCTAGCAGGCC TTTGTTACTCACTAT TERM 3128 3211849 - 3211877 + T 72 -6.7 -4.26202 | gap 1, opp_overlap 3211849 AGAAGATAAGAAAAA GGCCTGCCAAGC CAGGGC GCTAG-CAGGCC TTTGTTACTCACTAT Shew_2714 3212773 - 3212018 - | hypothetical protein Shew_2715 3213945 - 3213214 - | hypothetical protein TERM 3129 3214520 - 3214504 - g 70 -10.9 -3.28791 | opp_overlap 3214503 3214501 ATGCTCTGTTTACAA GCCTGAT CGC ATCAGGC CTCTTGCTCACTGGC Shew_2716 3214473 - 3216041 + | peptidase S41 Shew_2717 3216050 - 3216439 + | hypothetical protein TERM 3130 3216484 - 3216512 + F 100 -19 -4.75372 | GATGAGTCTTCTCCA CGACGGCTGCTT ACCCA AAGCAGCCGTCG TTTTTCATGGCTAAT Shew_2718 3216809 - 3219220 + | TonB-dependent receptor TERM 3131 3219263 - 3219246 - f 93 -11.3 -4.15565 | opp_overlap 3219246 TTCATCACCCTAAAA CAGGCCA TTTA TGGCCTG TTTTTTTATTCAGCC TERM 3132 3219246 - 3219263 + F 100 -11.3 -5.7946 | opp_overlap 3219246 TTCATCACCCTAAAA CAGGCCA TTTA TGGCCTG TTTTTTTATTCAGCC Shew_2719 3219369 - 3219554 + | hypothetical protein TERM 3133 3219683 - 3219668 - T 100 -10.4 -5.71983 | opp_overlap 3219668 TTAACCATAAAAAAA CGCAGC CTAG GCTGCG TTTTTAGTGTTACTC TERM 3134 3219668 - 3219683 + T 93 -10.4 -4.89233 | opp_overlap 3219668 TTAACCATAAAAAAA CGCAGC CTAG GCTGCG TTTTTAGTGTTACTC Shew_2720 3221550 - 3219709 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 3135 3221854 - 3221840 - H 74 -7.8 -4.07568 | TGTCGGCTGGTAAAA GCGCTG TTG CAACGC GCCAAGGCTGGTATA Shew_2721 3221882 - 3222154 + | hypothetical protein TERM 3136 3222222 - 3222188 - f 100 -12.8 -3.80516 | AAGTAACCCATTAAA CACCGGCAATGTCGCT ACA AGCGCCGTTCCCGGTG ACGAGCCTCCCCTTT Shew_2722 3222236 - 3222943 + | hypothetical protein Shew_2723 3222990 - 3223526 + | NUDIX hydrolase TERM 3137 3223597 - 3223582 - T 100 -10.4 -5.68039 | opp_overlap 3223582 AAACCCACAAAAAAA GAGCGC CGCA GCGCTC TTTTTAATACCGATA TERM 3138 3223582 - 3223597 + T 91 -10.4 -4.72986 | opp_overlap 3223582 AAACCCACAAAAAAA GAGCGC CGCA GCGCTC TTTTTAATACCGATA Shew_2724 3224535 - 3223621 - | indigoidine synthase A family protein Shew_2725 3225620 - 3224529 - | ribokinase-like domain-containing protein TERM 3139 3225741 - 3225701 - R 79 -2.6 -5.38326 | opp_overlap 3225702 3225709 3225714, overlap 3225702 3225709 GCAAGCAAATAAAAA GCGACAAACAAATGTTTG CATAC CAAACTTTTGTTTTACGT TAATCGATTTCGCCA TERM 3140 3225709 - 3225733 + r 70 -5.8 -4.30014 | opp_overlap 3225709 3225702 3225701, overlap 3225702 3225714 ATAAAAAGCGACAAA CAAATGTTTG CATAC CAAACTTTTG TTTTACGTTAATCGA TERM 3141 3225714 - 3225728 + r 77 -4.3 -5.13343 | opp_overlap 3225709 3225702 3225701, overlap 3225709 3225702 AAGCGACAAACAAAT GTTTG CATAC CAAAC TTTTGTTTTACGTTA TERM 3142 3225899 - 3225885 - R 100 -8.5 -5.67063 | opp_overlap 3225885 3225882 TCGAGCATAAAAAAA GCGCC GAATA GGCGC TCATTAATTGACGGA Shew_2726 3226403 - 3225951 - | hypothetical protein TERM 3143 3226299 - 3226276 - G 79 -7.4 -4.66318 | gap 1, opp_overlap 3226276 ACCAGCTGAATAAAA CGCGATGGCGG GAT CCG-CATGGCG TGGTTGGCCACTAAG Shew_2727 3226571 - 3227269 + | hypothetical protein TERM 3144 3227923 - 3227912 - g 78 -5.8 -4.77173 | opp_overlap 3227913 3227915, overlap 3227914 GCGGTAGAAAAGAAA CTGG CCGC CCAG CAGCTGTTGTCGGAG Shew_2728 3227282 - 3228163 + | hypothetical protein TERM 3145 3228207 - 3228183 - T 100 -12.2 -4.83759 | gap 1 AACGAAACCCAAAAA GCCTGTCGTCC TTTA GG-CGACAGGC ACTAGAAGCGTCAGA Shew_2729 3228877 - 3228287 - | TetR family transcriptional regulator TERM 3146 3229599 - 3229578 - g 74 -6.5 -4.3898 | ATGAGCTTCATAAAA CACCTGGAG ATCA CCCCAAGCG ACGACCAGCCCCACC Shew_2730 3229038 - 3229673 + | glutathione S-transferase domain-containing protein TERM 3147 3229741 - 3229706 - T 73 -4.6 -4.75954 | overlap 3229709 AAAAGCTAAAACAAA CAAGGCGAGCCCAAGC CAAA GCTCAAACTCGCCCCC TATTAACGCCCCGCT TERM 3148 3229738 - 3229709 - T 90 -10.7 -4.44301 | overlap 3229706 AGCTAAAACAAACAA GGCGAGCCCAAGC CAAA GCTCAAACTCGCC CCCTATTAACGCCCC TERM 3149 3229846 - 3229858 + T 88 -4.1 -5.58454 | ATCATTAGTATTTGA CTACT GCC GGTAG TTTTTTTGATATCCC Shew_2731 3230395 - 3229835 - | hypothetical protein Shew_2732 3230904 - 3230428 - | hypothetical protein Shew_2733 3231358 - 3231014 - | GCN5-related N-acetyltransferase TERM 3150 3231718 - 3231708 - R 71 -8.2 -3.76224 | overlap 3231709 GTTTCAGGGATGAAA CCGC AGA GCGG CCATGGATGGCGCAC TERM 3151 3231807 - 3231791 - R 72 -9.5 -3.15708 | ATAGATCACAGTGAA GGTTTGA CAT TCAAACC CACTCAACAGATGAA TERM 3152 3231868 - 3231854 - R 87 -8.6 -4.49958 | ACCTGAGCAAATAAA GGGATT GCC AATCCC TACTCCCCTTCCTGC Shew_2734 3232251 - 3231868 - | 4-carboxymuconolactone decarboxylase Shew_2735 3233423 - 3232509 - | patatin Shew_2736 3233948 - 3233472 - | MarR family transcriptional regulator Shew_2737 3234939 - 3234151 - | AraC family transcriptional regulator Shew_2738 3235421 - 3234978 - | alkylhydroperoxidase Shew_2739 3235811 - 3237238 + | Fmu (Sun) domain-containing protein TERM 3153 3237256 - 3237284 + T 86 -11 -3.92373 | gap 1, opp_overlap 3237257, overlap 3237257 TTCCCATCTCTCAAC ACGCAGCGCCGCA CTCT TGCGGCG-TGCGC TTTCTCCGTGCGCTG TERM 3154 3237257 - 3237283 + T 89 -14.5 -2.95102 | gap 1, opp_overlap 3237257, overlap 3237256 TCCCATCTCTCAACA CGCAGCGCCGCA CTCT TGCGGCG-TGCG CTTTCTCCGTGCGCT TERM 3155 3237283 - 3237257 - T 89 -14.5 -3.03124 | gap 1, opp_overlap 3237257 3237256 TCCCATCTCTCAACA CGCAGCGCCGCA CTCT TGCGGCG-TGCG CTTTCTCCGTGCGCT TERM 3156 3237630 - 3237612 - T 76 -10.3 -3.41051 | TGATGCCCAGGATAA GCTACGC AACAA GCGTAGC AAGCAGAGACGTCGC Shew_2740 3238333 - 3237800 - | YfaZ family protein Shew_2741 3238632 - 3239120 + | glutathione peroxidase TERM 3157 3239281 - 3239299 + T 100 -10.3 -5.61596 | CTAGATGGATCGACA GGCAACC TCCTT GGTTGCC TTTTTTTATAAAAAT TERM 3158 3239686 - 3239704 + T 100 -13.2 -6.13 | CACTTATTTGATTCA TGGCAACC TTT GGTTGCCA TTTTTTTTTGCCTGT TERM 3159 3239767 - 3239777 + T 79 -2.6 -5.32565 | CGGGAAAAATCGGCC TTTT TCG AAAA TTTTTTAATTAATTG TERM 3160 3239949 - 3239969 + T 100 -15.5 -5.67967 | opp_overlap 3239945 3239946, overlap 3239948 CCAAATAGATAGTTG TGGCAACCC CTT GGGTTGCCA TTTTTTTATCCTGCT Shew_2742 3241833 - 3240013 - | peptidase M1, membrane alanine aminopeptidase TERM 3161 3240297 - 3240319 + g 70 -12 -2.61144 | overlap 3240296 AGTCGATCAACGCCT CTTGCTCGAG CAC CTCGGGCAGG CTATTTAGGAAATAC Shew_2743 3242067 - 3242948 + | collagenase Shew_2744 3243902 - 3242973 - | putative esterase TERM 3162 3244202 - 3244220 + r 100 -8.1 -5.9873 | opp_overlap 3244202 GAATTTGGAACTTAA GCGACCT CATCA GGGTCGC TTTTTTTTATCCTGA TERM 3163 3244347 - 3244359 + r 73 -9.1 -3.48276 | TCAAGGTCTTGAATT GCCTG CGG CAGGC TTATGTGCAAACACA Shew_2745 3245404 - 3244646 - | hypothetical protein TERM 3164 3244732 - 3244721 - G 70 -3 -4.71382 | opp_overlap 3244721 ATAACTATCGAAAAA TATC ACTG GATA GTCTTTAAGATCGAA TERM 3165 3245444 - 3245468 + r 82 -7.8 -4.51763 | gap 1, opp_overlap 3245445, overlap 3245445 CTAACGTTAGCAACA AGC-GGCGCAG GTCA CTGCGCCCGCC TTTGTTGTATTGTTA TERM 3166 3245467 - 3245445 - R 91 -11.3 -3.73534 | gap 1, opp_overlap 3245444 3245445 TAACGTTAGCAACAA GC-GGCGCAG GTCA CTGCGCCCGC CTTTGTTGTATTGTT TERM 3167 3245445 - 3245467 + r 83 -11.3 -3.29431 | gap 1, opp_overlap 3245445, overlap 3245444 TAACGTTAGCAACAA GC-GGCGCAG GTCA CTGCGCCCGC CTTTGTTGTATTGTT Shew_2746 3246135 - 3245455 - | hypothetical protein TERM 3168 3246359 - 3246370 + r 72 -7.2 -4.09511 | opp_overlap 3246349 3246359 ATCCATCTGGAATAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 3169 3246741 - 3246731 - R 71 -8.2 -3.76224 | overlap 3246732 GTTTCAGGGATGAAA CCGC AGA GCGG CCAGGGATGGCGCAC TERM 3170 3246992 - 3247004 + r 70 -9.1 -3.18274 | TTCCCACATTCCCCC CGCCT GGT AGGCG TTAGATTGCCATGAA TERM 3171 3247126 - 3247096 - R 73 -10.5 -3.05844 | opp_overlap 3247103 3247124, overlap 3247080 3247079 3247077 3247103 GTCTTCATTTGAAGA CAAAAAAGGCCTC ACTAG GAGGCCTTTTCAG TTCAAGCTGTCGTCT TERM 3172 3247119 - 3247103 - R 100 -9.4 -5.47159 | opp_overlap 3247103, overlap 3247096 TTTGAAGACAAAAAA GGCCTC ACTAG GAGGCC TTTTCAGTTCAAGCT TERM 3173 3247103 - 3247119 + r 84 -9.4 -4.27584 | opp_overlap 3247103 3247096 TTTGAAGACAAAAAA GGCCTC ACTAG GAGGCC TTTTCAGTTCAAGCT Shew_2747 3248112 - 3247141 - | phosphate binding protein TERM 3174 3248355 - 3248374 + r 85 -10.7 -3.71649 | opp_overlap 3248355 AAGGCCCATAAAAAA CGCCGTC ATTATC GACGGCG TTTAAGCTTTGCAAG TERM 3175 3248374 - 3248355 - R 100 -11.4 -5.25803 | opp_overlap 3248355 AAGGCCCATAAAAAA CGCCGTCA TTAT CGACGGCG TTTAAGCTTTGCAAG Shew_2748 3249728 - 3248436 - | PAS/PAC sensor signal transduction histidine kinase Shew_2749 3250770 - 3250045 - | two component transcriptional regulator TERM 3176 3250876 - 3250859 - R 100 -12.7 -4.80882 | opp_overlap 3250859 ATCTTACATCAAAAA GGGAGGC ATAA GCCTCCC TTTAGTCAGCACTCG TERM 3177 3250859 - 3250876 + r 100 -12.7 -3.73224 | opp_overlap 3250859 ATCTTACATCAAAAA GGGAGGC ATAA GCCTCCC TTTAGTCAGCACTCG Shew_2750 3251872 - 3250922 - | porin TERM 3178 3252127 - 3252149 + H 72 -3.3 -4.96773 | overlap 3252129 GCGGTTTACCCGCGC GGCGCAATG GCTTA CACTGCGGC TTTATTTTTGATTGA rdgC 3252174 - 3253085 + | recombination associated protein TERM 3179 3253131 - 3253168 + T 89 -15.1 -2.53911 | opp_overlap 3253135 3253142, overlap 3253135 3253142 CTTTTAAGTTGCCAA GGAATAAAAAACCACCC AAGC GGGTGGTTTTTTGTTCA TGGGTTCAGCATTCA TERM 3180 3253164 - 3253135 - T 90 -12.3 -3.3482 | opp_overlap 3253131 3253135 3253142, overlap 3253142 TAAGTTGCCAAGGAA TAAAAAACCACCC AAGC GGGTGGTTTTTTG TTCATGGGTTCAGCA TERM 3181 3253135 - 3253164 + T 95 -14.5 -3.21912 | opp_overlap 3253135 3253142, overlap 3253131 3253142 TAAGTTGCCAAGGAA TAAAAAACCACCC AAGC GGGTGGTTTTTTG TTCATGGGTTCAGCA TERM 3182 3253157 - 3253142 - T 100 -10.4 -5.5604 | opp_overlap 3253135 3253131 3253142, overlap 3253135 CCAAGGAATAAAAAA CCACCC AAGC GGGTGG TTTTTTGTTCATGGG TERM 3183 3253142 - 3253157 + T 100 -10.4 -5.5112 | opp_overlap 3253142 3253135, overlap 3253135 3253131 CCAAGGAATAAAAAA CCACCC AAGC GGGTGG TTTTTTGTTCATGGG Shew_2752 3255042 - 3253246 - | peptidase M61 domain-containing protein TERM 3184 3253298 - 3253311 + g 71 -6.7 -4.33258 | TCAATTCCCAGCCAG GCCTT GAAG AAGGC TTTCTGTTTCCGGCT TERM 3185 3256785 - 3256774 - g 72 -2.2 -4.9792 | CATGCGACAGAAAAA TGAG ATTG CCCA GCTGGCGCTGCTCTC Shew_2753 3255170 - 3257326 + | TPR repeat-containing protein Shew_2754 3257518 - 3259074 + | diguanylate cyclase TERM 3186 3259075 - 3259093 + F 74 -11 -2.76009 | overlap 3259074 ATTATTGACGCCTAA TCCTGGGG CTA TCCCAGGA GTTTCCACCCTTTTC Shew_2755 3259149 - 3260501 + | hypothetical protein TERM 3187 3261077 - 3261056 - g 72 -10.1 -3.64487 | CGACAGCGGCAACAA GATCCCCGG CATT CCGGGTATC GGCCCTAAGTCGGCC xni 3260520 - 3261290 + | exonuclease IX Shew_2757 3261443 - 3261829 + | hypothetical protein TERM 3188 3261868 - 3261844 - T 100 -14.3 -3.68292 | opp_overlap 3261841 3261841 3261837, overlap 3261839 3261859 ACCGCCAAGATAGAA CAGGCGCTGTT ATA ACCAGCGCCTG ACACTCTTTAAATAC Shew_2758 3262335 - 3261853 - | hypothetical protein TERM 3189 3262420 - 3262466 + r 100 -18.1 -3.89291 | opp_overlap 3262420 3262422 3262450, overlap 3262442 ACACGCCATAAAAAA GCCGGGCTAGGCCCGGCTT AAGGTATAC AAGCTGGGCTTAGCCCGCC TTCTTATACTCTTGA TERM 3190 3262436 - 3262420 - R 100 -15.1 -5.26918 | opp_overlap 3262420, overlap 3262422 ACACGCCATAAAAAA GCCGGGC TAG GCCCGGC TTAAGGTATACAAGC TERM 3191 3262464 - 3262422 - R 93 -15.6 -2.84317 | opp_overlap 3262420 3262442, overlap 3262420 3262450 ACGCCATAAAAAAGC CGGGCTAGGCCCGGCTTA AGGTATA CAAGCTGGGCTTAGCCCG CCTTCTTATACTCTT Shew_2759 3265270 - 3262457 - | peptidase S9 prolyl oligopeptidase TERM 3192 3264950 - 3264967 + g 74 -4.7 -4.77036 | overlap 3264933 GGCCTTAAGTTTCTT GCGGGCC TTGA GGCTGGC TTTTTCCTGCTCGAG TERM 3193 3265438 - 3265423 - H 95 -3.2 -5.71712 | opp_overlap 3265424, overlap 3265424 GCCTACACAAAAAAA CGTGAG ATTG CTCACT ATTTCCTGTGAAATT TERM 3194 3265437 - 3265424 - H 70 -6.7 -4.01943 | opp_overlap 3265424, overlap 3265423 CCTACACAAAAAAAC GTGAG ATTG CTCAC TATTTCCTGTGAAAT Shew_2760 3265570 - 3266577 + | isocitrate dehydrogenase TERM 3195 3266640 - 3266611 - T 100 -15.1 -4.36127 | opp_overlap 3266617, overlap 3266617 GCGAATAAGCTAAAA CAAAAAGCCCCGC AATC GCGGGGCTTTTTT TATCCGATATTTCTT TERM 3196 3266634 - 3266617 - T 100 -14.1 -5.49568 | opp_overlap 3266617, overlap 3266611 AAGCTAAAACAAAAA GCCCCGC AATC GCGGGGC TTTTTTTATCCGATA TERM 3197 3266617 - 3266634 + T 100 -14.1 -5.626 | opp_overlap 3266617 3266611 AAGCTAAAACAAAAA GCCCCGC AATC GCGGGGC TTTTTTTATCCGATA Shew_2761 3267845 - 3266754 - | putative RNA 2'-O-ribose methyltransferase TERM 3198 3267797 - 3267753 - G 77 -10.6 -3.85817 | opp_overlap 3267774 ATTGGTCTTTACAAA GCCGCCAACATTCAGCTCCG CGGCT CGCTGCTGGATCTCGGCGGC GCAGTCTTTCTCGTA TERM 3199 3267892 - 3267867 - R 100 -10.4 -5.45652 | opp_overlap 3267867 ATCCTGAATAAAAAA TGGCGACCCA TATCAT TGGGGCGCCA TTCTACACTTTCTCG TERM 3200 3267867 - 3267892 + r 76 -10.4 -3.41126 | opp_overlap 3267867 ATCCTGAATAAAAAA TGGCGACCCA TATCAT TGGGGCGCCA TTCTACACTTTCTCG Shew_2762 3268326 - 3267937 - | hypothetical protein Shew_2763 3269041 - 3268319 - | dienelactone hydrolase TERM 3201 3268484 - 3268458 - G 71 -7.2 -4.08064 | AATTTGGCCTTAAAA GGTGCAAGCCAA GGT TCGACCTGCCCC TTGGCGCCAAATTTA Shew_2764 3270013 - 3269102 - | DNA-binding transcriptional activator GcvA Shew_2765 3270196 - 3270426 + | hypothetical protein TERM 3202 3270479 - 3270450 - T 71 -9.3 -3.41988 | overlap 3270448 CGGCAGCTAATAATA GTCTGCAGCTACC GATA GCCAGCTGCAAAC ACTAAGCAACAAGCC TERM 3203 3270511 - 3270492 - T 77 -9.2 -3.85518 | opp_overlap 3270492 AACACTAAGCAACAA GCCGCGTC TTAT GATGCGGC TTTTTTATGCCCGCA TERM 3204 3270492 - 3270511 + T 100 -11.4 -5.24129 | opp_overlap 3270492 AACACTAAGCAACAA GCCGCGTC TTAT GATGCGGC TTTTTTATGCCCGCA TERM 3205 3270690 - 3270673 - T 100 -10.5 -5.26918 | opp_overlap 3270673 ACAGTCCATAAAAAA GGCCGCC CGAA GGCAGCC TTAATCTCGAATGCT Shew_2766 3272255 - 3270798 - | thiamine biosynthesis protein ThiI TERM 3206 3272444 - 3272465 + r 77 -10.1 -3.50219 | opp_overlap 3272445, overlap 3272445 CTGGTAGAAATGAAA AGCGTCCAC CGAT GTGGACGCC TTATCTGAAACTATT TERM 3207 3272464 - 3272445 - R 100 -13.6 -4.61873 | opp_overlap 3272444 3272445 TGGTAGAAATGAAAA GCGTCCAC CGAT GTGGACGC CTTATCTGAAACTAT TERM 3208 3272445 - 3272464 + r 86 -13.6 -2.69649 | opp_overlap 3272445, overlap 3272444 TGGTAGAAATGAAAA GCGTCCAC CGAT GTGGACGC CTTATCTGAAACTAT motB 3273454 - 3272510 - | flagellar motor protein MotB TERM 3209 3273415 - 3273376 - G 77 -12.2 -3.28265 | gap 1, overlap 3273374 3273368 3273395 3273409 AGAAACACATCAATA GCG-ACATGAGGTCGGCAA AGG TTGCCAACCACATGGGCGC CCCGGCGGGCGGGCA Shew_2768 3274226 - 3273459 - | flagellar motor protein PomA TERM 3210 3273701 - 3273681 - G 74 -10.4 -3.61715 | gap 1, overlap 3273657 GAGTGTGGTCAACAA GGCCACCGC CATG GCGG-GGCC GATAGACTTAGGGTC Shew_2769 3274622 - 3274861 + | exodeoxyribonuclease VII, small subunit TERM 3211 3274979 - 3274957 - g 74 -11.2 -3.24245 | opp_overlap 3274957, overlap 3274953 3274952 3274972 CGAGCCACAACTCAA GGCCGCCATG GAA CACGGCGCCC TGATTGGCGGCAAAC Shew_2770 3274862 - 3275743 + | polyprenyl synthetase TERM 3212 3276904 - 3276936 + G 74 -12.7 -2.79831 | CACTCGCCGCCGGCT TCGCCTGTGAAGGCT ACA AGCCTGTACTGGCGA TCTACTCCACCTTCC Shew_2771 3275766 - 3277634 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 3213 3277647 - 3277686 + T 100 -16 -4.7261 | gap 1, opp_overlap 3277659, overlap 3277659 TAAAATCCATTTTAT GCGAACAAAAAAGGCCTCA TAT TGAGGCCTTTTTTAT-CGC TTTCTTTTACTGACT TERM 3214 3277675 - 3277659 - T 100 -12.3 -5.46657 | opp_overlap 3277647 3277659 TATGCGAACAAAAAA GGCCTCA TAT TGAGGCC TTTTTTATCGCTTTC TERM 3215 3277659 - 3277675 + T 100 -12.3 -5.33866 | opp_overlap 3277659, overlap 3277647 TATGCGAACAAAAAA GGCCTCA TAT TGAGGCC TTTTTTATCGCTTTC Shew_2772 3278337 - 3277720 - | GrpE protein Shew_2773 3278438 - 3279316 + | NAD(+) kinase TERM 3216 3279331 - 3279361 + T 85 -12 -3.38326 | opp_overlap 3279337, overlap 3279337 AGCCGCCAGTATCAT TAAAAAGCCCGC ATCTTTC GCGGGCTTTTTG TTAGTTGACCTTGTA TERM 3217 3279337 - 3279355 + T 95 -8.8 -5.1963 | opp_overlap 3279337, overlap 3279331 CAGTATCATTAAAAA GCCCGC ATCTTTC GCGGGC TTTTTGTTAGTTGAC TERM 3218 3279355 - 3279337 - T 91 -9.5 -4.78107 | opp_overlap 3279337 3279331 CAGTATCATTAAAAA GCCCGCA TCTTT CGCGGGC TTTTTGTTAGTTGAC Shew_2774 3280426 - 3279362 - | TonB family protein Shew_2775 3282026 - 3280656 - | MATE efflux family protein TERM 3219 3280988 - 3280976 - G 74 -7.7 -4.27886 | overlap 3280983 CGGCAAAGATATAAA CCAGA TAT TCTGG CGCCCAGTAGATAAA Shew_2776 3283212 - 3282139 - | cobalamin synthesis protein, P47K Shew_2777 3284653 - 3283298 - | DEAD/DEAH box helicase domain-containing protein Shew_2778 3287770 - 3284738 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Shew_2779 3288098 - 3288907 + | amino acid ABC transporter Shew_2780 3288994 - 3289434 + | thioesterase superfamily protein Shew_2781 3290954 - 3289458 - | diguanylate cyclase/phosphodiesterase Shew_2782 3291868 - 3291026 - | putative signal transduction protein TERM 3220 3292224 - 3292204 - g 75 -2.6 -5.0538 | opp_overlap 3292219, overlap 3292207 CGGGACCCTAAAAAA TATGCG TTATGCCTT CGCATA TGGCGCCGATGCGGT Shew_2783 3292157 - 3293518 + | peptidase U32 TERM 3221 3293554 - 3293574 + F 100 -16.9 -5.40072 | opp_overlap 3293554 AACACAGCCTCTAAA CAGCCCGAG ACC CTCGGGCTG TTTTTTTACCCCCAG TERM 3222 3293574 - 3293554 - f 100 -16.9 -3.57387 | opp_overlap 3293554 AACACAGCCTCTAAA CAGCCCGAG ACC CTCGGGCTG TTTTTTTACCCCCAG Shew_2784 3294030 - 3295358 + | phosphoesterase, PA-phosphatase related TERM 3223 3295389 - 3295417 + F 89 -11.7 -3.5764 | opp_overlap 3295387 3295390, overlap 3295390 AAATACATATAACCT ATCGATTGGCTCC ATT GGAGCCGGTCGAA TTTCACCCTCACCTT TERM 3224 3295416 - 3295390 - f 74 -10.8 -2.65993 | opp_overlap 3295389 3295390, overlap 3295387 AATACATATAACCTA TCGATTGGCTCC ATT GGAGCCGGTCGA ATTTCACCCTCACCT TERM 3225 3295390 - 3295416 + F 93 -15.2 -2.74263 | opp_overlap 3295390 3295387, overlap 3295389 AATACATATAACCTA TCGATTGGCTCC ATT GGAGCCGGTCGA ATTTCACCCTCACCT Shew_2785 3295591 - 3295848 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 3226 3295915 - 3295886 - T 100 -13.7 -4.78326 | opp_overlap 3295892 3295914, overlap 3295892 CTCCAAATAAATAAA CAAAAAGCGAAGC CTTA GCTTCGCTTGTTG ATGCCTCATCATGAG TERM 3227 3295892 - 3295909 + T 91 -11.3 -3.73914 | opp_overlap 3295886 3295892 ATAAATAAACAAAAA GCGAAGC CTTA GCTTCGC TTGTTGATGCCTCAT TERM 3228 3295909 - 3295892 - T 100 -11.3 -5.56573 | opp_overlap 3295892, overlap 3295886 ATAAATAAACAAAAA GCGAAGC CTTA GCTTCGC TTGTTGATGCCTCAT Shew_2786 3296461 - 3295949 - | sterol-binding domain-containing protein TERM 3229 3296812 - 3296796 - g 71 -4.4 -4.58395 | TTTACGCCGGAAAAA TTAGCC CAGGC GGCCAA GCTCACCCAGCAGGC Shew_2787 3296658 - 3297659 + | peptidase U32 Shew_2788 3297692 - 3298537 + | peptidase U32 Shew_2789 3299348 - 3298623 - | hypothetical protein Shew_2790 3299791 - 3301146 + | nucleoside recognition domain-containing protein TERM 3230 3301186 - 3301169 - f 100 -12.7 -4.62069 | opp_overlap 3301169 GCGTTAGCTTAAAAA GGGCAGC TCAG GCTGCCC TTTCTTATGGCCGCA TERM 3231 3301169 - 3301186 + F 100 -12.7 -4.30719 | opp_overlap 3301169 GCGTTAGCTTAAAAA GGGCAGC TCAG GCTGCCC TTTCTTATGGCCGCA Shew_2791 3301398 - 3305078 + | PAS/PAC sensor signal transduction histidine kinase Shew_2792 3305141 - 3306958 + | phospholipid/glycerol acyltransferase TERM 3232 3307048 - 3307019 - T 82 -12.3 -2.72344 | opp_overlap 3307026, overlap 3307026 GGCTATCTTCAAGCA TAAAAAAGACGCC TCAG GGCGTCTTTTTTG TCGCAAGCTTTTGTG TERM 3233 3307041 - 3307026 - T 100 -10.4 -5.37345 | opp_overlap 3307026, overlap 3307019 TTCAAGCATAAAAAA GACGCC TCAG GGCGTC TTTTTTGTCGCAAGC TERM 3234 3307026 - 3307041 + T 100 -10.4 -5.24129 | opp_overlap 3307026 3307019 TTCAAGCATAAAAAA GACGCC TCAG GGCGTC TTTTTTGTCGCAAGC Shew_2793 3308333 - 3307200 - | succinyl-diaminopimelate desuccinylase Shew_2794 3308689 - 3309117 + | CBS domain-containing protein TERM 3235 3309148 - 3309138 - T 74 -5.4 -4.71382 | ACAAGTATTGAAAAA TGAG TCA CTCA ACAGCCTTGCTTAAC TERM 3236 3309218 - 3309186 - T 100 -15.8 -3.60006 | gap 1, opp_overlap 3309187 3309189 3309193, overlap 3309189 3309193 AACGACAGCCTTAAA CGACAAACCCAGGTC AAAT GACCTGGGTTTGT-G TTATTTGAGGTGCAG TERM 3237 3309187 - 3309218 + T 100 -16 -3.9392 | opp_overlap 3309186 3309189 3309193, overlap 3309189 3309193 ACGACAGCCTTAAAC GACAAACCCAGGTC AAAT GACCTGGGTTTGTG TTATTTGAGGTGCAG TERM 3238 3309189 - 3309216 + T 100 -18.6 -3.55946 | opp_overlap 3309186 3309189 3309193, overlap 3309187 3309193 GACAGCCTTAAACGA CAAACCCAGGTC AAAT GACCTGGGTTTG TGTTATTTGAGGTGC TERM 3239 3309216 - 3309189 - T 100 -18.6 -2.92171 | opp_overlap 3309189 3309187 3309193, overlap 3309186 3309193 GACAGCCTTAAACGA CAAACCCAGGTC AAAT GACCTGGGTTTG TGTTATTTGAGGTGC TERM 3240 3309212 - 3309193 - T 100 -13.6 -4.13654 | opp_overlap 3309189 3309187 3309193, overlap 3309189 3309186 GCCTTAAACGACAAA CCCAGGTC AAAT GACCTGGG TTTGTGTTATTTGAG TERM 3241 3309193 - 3309212 + T 100 -13.6 -4.40333 | opp_overlap 3309193 3309189 3309186, overlap 3309189 3309187 GCCTTAAACGACAAA CCCAGGTC AAAT GACCTGGG TTTGTGTTATTTGAG Shew_2795 3310621 - 3309263 - | xanthine/uracil/vitamin C permease Shew_2796 3311100 - 3311300 + | periplasmic nitrate reductase NapE Shew_2797 3311331 - 3312509 + | trimethylamine-N-oxide reductase c-type cytochrome TorC Shew_2798 3312522 - 3315008 + | trimethylamine-N-oxide reductase TorA TERM 3242 3315274 - 3315293 + G 71 -11.4 -3.17051 | opp_overlap 3315271 3315286, overlap 3315271 3315272 CTCCCTACTGAATCT GGCCGCAG ATTA TTGCGGCC TCTTCCTGGTAGGCG TERM 3243 3315429 - 3315402 - g 71 -12 -2.83715 | CTCAGCATCAGGAGA TGCTTGCCCTGC TCAA GCAGAGCAAGCT GGGAGTGCAGAGCGA TERM 3244 3315620 - 3315651 + G 78 -13 -3.30159 | overlap 3315621 TTCTATCAGGCCCTC GCCAGGCTCACCCA AATC TGGGTCAGCCTGGA TTGTGAGGCGCTTGG TERM 3245 3315621 - 3315650 + G 85 -16.5 -2.57881 | overlap 3315620 TCTATCAGGCCCTCG CCAGGCTCACCCA AATC TGGGTCAGCCTGG ATTGTGAGGCGCTTG torD 3315038 - 3315673 + | chaperone protein TorD TERM 3246 3315658 - 3315670 + T 70 -10.5 -2.62616 | CAGCCTGGATTGTGA GGCGC TTG GCGCC TGATATCAGAGCTAC TERM 3247 3315703 - 3315722 + T 75 -10.6 -2.91395 | overlap 3315707 GCGTCTACCACCCTG ACCGCGCC GCTT GGCGCGGC GTTTCTGCGCCGCCT TERM 3248 3315707 - 3315723 + T 86 -10.8 -3.86194 | overlap 3315703 CTACCACCCTGACCG CGCCGC TTGGC GCGGCG TTTCTGCGCCGCCTT Shew_2800 3316911 - 3315685 - | DEAD/DEAH box helicase domain-containing protein TERM 3249 3316669 - 3316689 + g 71 -7.6 -4.0492 | gap 1 TTCGCGGGTGGGCAC CAGCACCAG GGCT CTGG-GCTG TTTATCTGACCCTTC Shew_2801 3320205 - 3317080 - | multi-sensor hybrid histidine kinase TERM 3250 3317571 - 3317600 + g 79 -7.9 -4.56597 | gap 1, overlap 3317573 CTTTCTCTTTGACGT CTTCGGCTTCT-TC GGC GACAGGAGCCGATG TTTTTGACGCCCGCC TERM 3251 3317573 - 3317598 + g 73 -9.1 -3.90048 | gap 1, overlap 3317571 TTCTCTTTGACGTCT TCGGCTTCT-TC GGC GACAGGAGCCGA TGTTTTTGACGCCCG TERM 3252 3318221 - 3318188 - G 74 -11 -3.34244 | overlap 3318186 3318184 TAGGCGATAAACAGA CGGGCCTTGGCATC TTCGGG GATCCCAAGGCCAG TATCGCTCACGGTAA TERM 3253 3319162 - 3319194 + g 74 -11.3 -3.36515 | overlap 3319159 CATGGCCCCATCCAC CTGAGTGTTGAGCTG ACT CAGCTTGTCGCTCAG TGTTTGAAGCTGCGC TERM 3254 3320336 - 3320352 + G 70 -2.9 -4.71061 | overlap 3320334 3320333 GCTTGCCTCCATGGG CTGGC AATCGCC GCCGG TTTTTCCATATCGGT TERM 3255 3320855 - 3320840 - g 70 -5.4 -4.371 | overlap 3320842 CGCACCACAGCAAAA CAGCCT GGCA AGGCTA ACACCGAGCAAGCTA Shew_2802 3320273 - 3321436 + | periplasmic sensory protein associated with the TorRS two-component regulatory system Shew_2803 3322171 - 3321446 - | DNA-binding transcriptional regulator TorR Shew_2804 3322456 - 3322824 + | type IV pilus assembly PilZ TERM 3256 3322889 - 3322905 + F 85 -10.1 -4.2349 | opp_overlap 3322889 3322883 TGAAAGCAACACAAA GGGGACC TAG GGTCCTC TTTTCGATCTGGCGC TERM 3257 3322905 - 3322889 - f 79 -7.9 -4.31 | opp_overlap 3322889, overlap 3322883 TGAAAGCAACACAAA GGGGACC TAG GGTCCTC TTTTCGATCTGGCGC Shew_2805 3323306 - 3324391 + | choloylglycine hydrolase TERM 3258 3324429 - 3324412 - T 100 -12.7 -5.09426 | opp_overlap 3324412 CCTAAGCGCAAAAAA GCCTCCG ATAT CGGAGGC TTTTTTTATCTAAAC TERM 3259 3324412 - 3324429 + T 100 -12.7 -5.71712 | opp_overlap 3324412 CCTAAGCGCAAAAAA GCCTCCG ATAT CGGAGGC TTTTTTTATCTAAAC Shew_2806 3324975 - 3324475 - | GCN5-related N-acetyltransferase Shew_2807 3326375 - 3325002 - | DNA repair protein RadA TERM 3260 3326796 - 3326817 + G 77 -7.3 -4.4648 | gap 1 TTGAACATCTGACCT CGGG-CGAGT CTA ATTCGACCCG TTTTCTGCTCAAGAT Shew_2808 3326705 - 3329095 + | type IV pilus assembly PilZ Shew_2809 3330031 - 3329105 - | alpha/beta hydrolase fold TERM 3261 3330260 - 3330236 - R 82 -7.8 -4.54449 | opp_overlap 3330239, overlap 3330239 ATAGTCGAGATAAAA TAAGGCCCGC ACTAG GCGAGCCTTT TGATGCTGTGTTAGA TERM 3262 3330239 - 3330257 + r 77 -7.3 -4.34947 | opp_overlap 3330239 3330236 GTCGAGATAAAATAA GGCCCGC ACTAG GCGAGCC TTTTGATGCTGTGTT TERM 3263 3330257 - 3330239 - R 86 -9.5 -4.38141 | opp_overlap 3330239, overlap 3330236 GTCGAGATAAAATAA GGCCCGC ACTAG GCGAGCC TTTTGATGCTGTGTT Shew_2810 3331277 - 3330294 - | phosphoserine phosphatase SerB TERM 3264 3330342 - 3330366 + g 71 -9.1 -3.76839 | TCTTAGATCCAACTT GGCGATCGCCG CAT CGGCTGCCGCC TTTAGCTTAGGCTTG TERM 3265 3332011 - 3331969 - g 75 -6.1 -4.6635 | overlap 3331970 AAATCGGTAAGAAAA TCGCCGCCACCCTGGGAGC GGATG ACGCGCAGGAAAGCGACGA CTCGGCCCCAGATGC Shew_2811 3331320 - 3332054 + | membrane protein TERM 3266 3332205 - 3332177 - T 72 -3.2 -4.99035 | gap 1 CTAGTCAGACAAAAA CCTTGATCAGAGG GAAG CCT-TGATCACAG TAATACCCTGGTCAG TERM 3267 3332272 - 3332240 - T 91 -13 -3.18839 | gap 1, opp_overlap 3332248, overlap 3332248 ACCTTGAAACAGACA TAA-AAAAACGGGCC AATT GGCCCGTTTTTATTA AACACTCGCGTGATA TERM 3268 3332263 - 3332248 - T 100 -11.8 -5.77988 | opp_overlap 3332248, overlap 3332240 ACAGACATAAAAAAA CGGGCC AATT GGCCCG TTTTTATTAAACACT TERM 3269 3332248 - 3332263 + T 100 -11.8 -5.06816 | opp_overlap 3332240 3332248 ACAGACATAAAAAAA CGGGCC AATT GGCCCG TTTTTATTAAACACT deoD 3332999 - 3332289 - | purine nucleoside phosphorylase TERM 3270 3332552 - 3332564 + g 74 -7.7 -4.20368 | overlap 3332543 ATACGTTACCAACGC GGTAC TTA GTACC TTTCTCTTCGGCTGC TERM 3271 3333083 - 3333101 + r 75 -8.9 -3.67597 | CATAATATTGTAGCA GGATGAC CTTAA GTCATCC TTATTGCCTAGGCGA Shew_2813 3334326 - 3333109 - | phosphopentomutase deoA 3335669 - 3334338 - | thymidine phosphorylase TERM 3272 3334718 - 3334695 - G 71 -8.8 -3.86524 | gap 1 ATAGTTTTCGATAAA GTCGG-CTGGG CCA CCCAGGCCGGC AATCATGCGGCCGAA Shew_2815 3336600 - 3335827 - | deoxyribose-phosphate aldolase TERM 3273 3336686 - 3336717 + r 76 -5.8 -4.7878 | overlap 3336713 CATCTTCTGATTATA TTTATGGCCGGGCC TTCA GGCGTTGCCGTAAA TTTGTTTTATCGGTA TERM 3274 3337035 - 3337004 - R 83 -12.2 -3.13601 | overlap 3337002 3336998 3337000 3337006 3337009 CAAACCTAAGAGAGA GATGAGGAGCCGCC TTCA GGCGGCTCCCAAAC CTACAAAATTCTGAA TERM 3275 3337032 - 3337006 - R 89 -14.5 -3.11609 | gap 1, overlap 3337004 3337002 3336998 3337000 3337009 AACCTAAGAGAGAGA TGAGGAGCCGCC TTCA GGCGGCTCC-CA AACCTACAAAATTCT TERM 3276 3337030 - 3337009 - R 100 -17.3 -2.76055 | overlap 3337006 3337004 3337002 3336998 3337000 CTAAGAGAGAGATGA GGAGCCGCC TTCA GGCGGCTCC CAAACCTACAAAATT Shew_2816 3337885 - 3337052 - | nucleoside-specific channel-forming protein, Tsx TERM 3277 3338192 - 3338161 - R 89 -14.4 -3.06312 | opp_overlap 3338164 3338190 AAATGGTTGAGTTAA CGCTGACTCTGCCC TGCT GGGCAGAGTCGTCG TTCAGGGGCATCCCC TERM 3278 3338164 - 3338189 + r 93 -15.5 -2.71144 | opp_overlap 3338161 TGGTTGAGTTAACGC TGACTCTGCCC TGCT GGGCAGAGTCG TCGTTCAGGGGCATC Shew_2817 3339486 - 3338227 - | nucleoside transporter Shew_2818 3340494 - 3339664 - | TatD-related deoxyribonuclease TERM 3279 3339866 - 3339885 + g 79 -2.2 -5.30575 | gap 1 TGTTCTAACGGTAAC TTGACAAGG GTT TCTTG-CAA TTTTTTCGCTTTTTC Shew_2819 3340765 - 3340475 - | hypothetical protein TERM 3280 3341009 - 3340996 - R 100 -8.1 -5.61596 | opp_overlap 3340996 3340990 ATGTGCATAAAAAAA GCAGC CTAG GCTGC TTTTTCATTTGATTA TERM 3281 3340996 - 3341009 + r 87 -8.1 -5.04222 | opp_overlap 3340996, overlap 3340990 ATGTGCATAAAAAAA GCAGC CTAG GCTGC TTTTTCATTTGATTA prfC 3342602 - 3341022 - | peptide chain release factor 3 TERM 3282 3342736 - 3342715 - R 100 -10.8 -4.90013 | opp_overlap 3342715 TAACCTAAGTAAAAA GGCCCGCC GAAAAT GGCGAGCC TTATATAGTGATAGC TERM 3283 3342715 - 3342736 + r 73 -9.3 -3.56273 | opp_overlap 3342715 TAACCTAAGTAAAAA GGCCCGCCG AAAA TGGCGAGCC TTATATAGTGATAGC Shew_2821 3343688 - 3342798 - | lipoprotein NlpI TERM 3284 3343796 - 3343779 - R 100 -11.3 -5.61689 | opp_overlap 3343779 AAAACCAATAAAAAA GGAGACC TAAT GGTCTCC TTTCAAATTTCACTC TERM 3285 3343779 - 3343796 + r 91 -11.3 -3.72363 | opp_overlap 3343779 AAAACCAATAAAAAA GGAGACC TAAT GGTCTCC TTTCAAATTTCACTC Shew_2822 3345928 - 3343826 - | polynucleotide phosphorylase/polyadenylase Shew_2823 3346124 - 3348157 + | diguanylate cyclase/phosphodiesterase TERM 3286 3348236 - 3348222 - T 100 -11.4 -5.64274 | opp_overlap 3348222 TCAGGCATAAAAAAA GGAGGC TTA GCCTCC TTTTTTCACTACAGC TERM 3287 3348222 - 3348236 + T 100 -11.4 -5.08824 | opp_overlap 3348222 TCAGGCATAAAAAAA GGAGGC TTA GCCTCC TTTTTTCACTACAGC rpsO 3348534 - 3348265 - | 30S ribosomal protein S15 Shew_2825 3349577 - 3348630 - | tRNA pseudouridine synthase B rbfA 3349999 - 3349577 - | ribosome-binding factor A TERM 3288 3350115 - 3350098 - R 100 -14.1 -5.06816 | ATGCCTGAACAAAAA GGGCGGC TTAC GCCGCCC CCTGCTACTTATAAG infB 3352781 - 3350124 - | translation initiation factor IF-2 nusA 3354307 - 3352808 - | transcription elongation factor NusA TERM 3289 3353565 - 3353547 - G 70 -9.6 -3.49475 | CGCATGCCCACACAA GCACCGAT AGG ATCGATGC GACGGTCATTAGACT Shew_2829 3354820 - 3354335 - | hypothetical protein TERM 3290 3354827 - 3354815 - G 100 -6.2 -5.93252 | CCGAAAAACAAAAAA GGGC ATAAA GCCC CAGTACGACATCATC TERM 3291 3354894 - 3354879 - R 100 -6.8 -5.60689 | opp_overlap 3354879 CCAGATAACAAAAAA CCCCGT AATC ACGAGG TCATATCATTCAGAA TERM 3292 3354937 - 3354923 - R 80 -8.6 -4.20025 | opp_overlap 3354932 AACCTGTAACAGAAA TGAAGC GCT GCTTCA TCACTGGGAAGCTGG TERM 3293 3355090 - 3355075 - R 80 -9 -4.05714 | opp_overlap 3355074 ATTTGCAATGATAAA GGCAGA AACC TCTGCC ACTTTATCGATTCAG secG 3355682 - 3355338 - | preprotein translocase subunit SecG Shew_2831 3356466 - 3355684 - | Triose-phosphate isomerase TERM 3294 3356569 - 3356619 + r 74 -10.7 -2.62184 | gap 1, opp_overlap 3356590 3356592 TCGAAGCGATTACTT TTTATCCTCGCGCGGGATAAAT AGCACAGG ATTTAACCCG-GCGAGGCTAAA TCCTGTACAAGGGCC TERM 3295 3356629 - 3356590 - R 91 -11.6 -3.85698 | opp_overlap 3356569, overlap 3356592 CTCGCGCGGGATAAA TAGCACAGGATTTAACCC GGCG AGGCTAAATCCTGTACAA GGGCCTTAAACTAGC TERM 3296 3356627 - 3356592 - R 100 -14.2 -3.51934 | opp_overlap 3356569, overlap 3356590 CGCGCGGGATAAATA GCACAGGATTTAACCC GGCG AGGCTAAATCCTGTAC AAGGGCCTTAAACTA Shew_2832 3357966 - 3356635 - | phosphoglucosamine mutase Shew_2833 3358895 - 3358047 - | dihydropteroate synthase TERM 3297 3358958 - 3358930 - R 100 -12.6 -3.81137 | opp_overlap 3358938, overlap 3358933 3358938 CGCTAAAGACGTAAA CAAGAAAACCCC GTTAA GGGGTTTTCTTA GACAATGCAATTAAT TERM 3298 3358955 - 3358933 - R 93 -12.1 -4.02707 | opp_overlap 3358938, overlap 3358930 3358938 TAAAGACGTAAACAA GAAAACCCC GTTAA GGGGTTTTC TTAGACAATGCAATT TERM 3299 3358950 - 3358938 - R 81 -6.2 -5.011 | opp_overlap 3358938, overlap 3358933 3358930 ACGTAAACAAGAAAA CCCC GTTAA GGGG TTTTCTTAGACAATG TERM 3300 3358938 - 3358950 + r 78 -6.2 -4.63932 | opp_overlap 3358933 3358930 3358938 ACGTAAACAAGAAAA CCCC GTTAA GGGG TTTTCTTAGACAATG TERM 3301 3359002 - 3359015 + r 72 -6.7 -4.22214 | opp_overlap 3359002 GGTTACTTAACTACA GGTGA TTCA TCACC TTCTTTTGGCTCACT Shew_2834 3360956 - 3358989 - | ATP-dependent metalloprotease FtsH TERM 3302 3359731 - 3359774 + g 72 -9.6 -3.59262 | gap 1, opp_overlap 3359735 3359738, overlap 3359736 3359739 TCTTTCTCTTCTTCA GACATTACCATGGTGCGGCGC TCG GCGCC-CATCATGATCTTGTC TTTGGCGCTCTCGAA TERM 3303 3359739 - 3359766 + g 73 -12.8 -2.69057 | gap 1, opp_overlap 3359738 3359735, overlap 3359736 3359731 TTCTTCAGACATTAC CATGGTGCGGCGC TCG GCGCC-CATCATG ATCTTGTCTTTGGCG rrmJ 3361631 - 3361002 - | 23S rRNA methyltransferase J TERM 3304 3361484 - 3361497 + g 72 -2.4 -4.88495 | CTGTCATGCCGGGGC GGAT CAGCTT ATCC TTTTGTTGTATCTCT Shew_2836 3361714 - 3362022 + | hypothetical protein TERM 3305 3362048 - 3362065 + T 100 -11.3 -5.252 | opp_overlap 3362048 CATGCCCACAAAAAA GCCGCTA TCGA TAGCGGC TTTTTTGTGGGCATG TERM 3306 3362065 - 3362048 - T 100 -11.3 -5.252 | opp_overlap 3362048 CATGCCCACAAAAAA GCCGCTA TCGA TAGCGGC TTTTTTGTGGGCATG Shew_2837 3362575 - 3362099 - | transcription elongation factor GreA TERM 3307 3362320 - 3362330 + g 71 -6.8 -4.29325 | opp_overlap 3362320 TGGTGCCGAAAATAA CACG ACC CGTG TTTTCCATCTTGGTG TERM 3308 3362837 - 3362852 + r 95 -11.8 -4.2679 | opp_overlap 3362837 AACGCCCATAAAAAA GGCCGC TTGC GCGGCC TTTTCGTAAGGGTTA TERM 3309 3362852 - 3362837 - R 100 -11.8 -5.25803 | opp_overlap 3362837 AACGCCCATAAAAAA GGCCGC TTGC GCGGCC TTTTCGTAAGGGTTA carB 3366093 - 3362872 - | carbamoyl phosphate synthase large subunit Shew_2839 3367286 - 3366114 - | carbamoyl phosphate synthase small subunit TERM 3310 3366522 - 3366543 + g 70 -10.1 -3.53224 | overlap 3366523 GATGGCGTAGTCACA TGGCTCTGG GTCA CCAGGGCCG TTTGACAGGAAGATG TERM 3311 3367421 - 3367433 + r 100 -9.1 -5.82316 | opp_overlap 3367421 TCTTTCAAAAAAAAA CGCCA AAT TGGCG TTTTTTTTAAATACT TERM 3312 3367433 - 3367421 - R 100 -9.1 -6.06723 | opp_overlap 3367421 TCTTTCAAAAAAAAA CGCCA AAT TGGCG TTTTTTTTAAATACT Shew_2840 3368262 - 3367447 - | dihydrodipicolinate reductase TERM 3313 3367523 - 3367513 - G 71 -6.8 -4.20084 | overlap 3367514 ATCACCCAGCCAAAA TGCG GCG CGCA TGGCACCGTTGGCAA TERM 3314 3368331 - 3368350 + r 100 -12.2 -4.75174 | opp_overlap 3368331 TCATTTCAAAAAAAA GCCTAAGC AAAC GCTTAGGC TTTTTCGATTAGATA TERM 3315 3368350 - 3368331 - R 100 -12.2 -5.78622 | opp_overlap 3368331 TCATTTCAAAAAAAA GCCTAAGC AAAC GCTTAGGC TTTTTCGATTAGATA Shew_2841 3368976 - 3368359 - | peptidylprolyl isomerase, FKBP-type Shew_2842 3369845 - 3369057 - | peptidase M48, Ste24p TERM 3316 3370077 - 3370103 + r 82 -12.4 -2.75022 | opp_overlap 3370083, overlap 3370083 AAACATATAGCGATA AAAAAACCTCGC ATC GCGAGGTTTTTC ATTGTGTATCAGCAA TERM 3317 3370097 - 3370083 - R 100 -11.4 -5.65177 | opp_overlap 3370077 3370083 ATAGCGATAAAAAAA CCTCGC ATC GCGAGG TTTTTCATTGTGTAT TERM 3318 3370083 - 3370097 + r 100 -11.4 -4.9755 | opp_overlap 3370083, overlap 3370077 ATAGCGATAAAAAAA CCTCGC ATC GCGAGG TTTTTCATTGTGTAT Shew_2843 3371252 - 3370122 - | chaperone protein DnaJ TERM 3319 3371275 - 3371286 + r 70 -5.8 -4.40221 | overlap 3371280 TACTTTCTGCGCTAG GGTC TGTT GACC TTTTAGGTTTACTTT TERM 3320 3371280 - 3371298 + r 76 -3.8 -5.12068 | overlap 3371275 TCTGCGCTAGGGTCT GTTGACCT TTT AGGTTTAC TTTTTGTTCAATCTA TERM 3321 3371373 - 3371345 - R 85 -11.8 -3.29739 | gap 1 CTTAAGTTATACGAA CGGGCGTTA-GAG TTAC CCCATAACGCCCG CTGGAAATAATTTAG TERM 3322 3371381 - 3371403 + r 100 -10 -5.38321 | opp_overlap 3371381 3371384 AACGCCCGCTGGAAA TAATTTAGGC TGG GCCTGAATTA TTTTTTGTCGTCTTT Shew_2844 3373314 - 3371401 - | chaperone protein DnaK TERM 3323 3373562 - 3373587 + H 100 -6.1 -5.69379 | gap 1, opp_overlap 3373562, overlap 3373564 CAATCGAAGTAAAAC TCCCTCTGTGCC CCA GGCGCAT-GGGA TTTTTTTAGTTGTCT TERM 3324 3373564 - 3373586 + H 70 -7.6 -3.99187 | opp_overlap 3373562, overlap 3373562 ATCGAAGTAAAACTC CCTCTGTGCC CCA GGCGCATGGG ATTTTTTTAGTTGTC TERM 3325 3373849 - 3373864 + G 74 -4.6 -4.76087 | GTTCTACCTGCAGAC CGGGCT ACTG AACCCG TTTCTTTATTATCTG Shew_2845 3373622 - 3374548 + | hypothetical protein TERM 3326 3374587 - 3374627 + T 93 -12.2 -3.97102 | gap 1, opp_overlap 3374600, overlap 3374588 3374600 CAGAGATAGACGCCC TTGCATAAAAAAACCGACC CTAG GGTCGGTTTTTTTAT-CAC TTATTGATTTTCGGT TERM 3327 3374588 - 3374626 + T 93 -15.7 -2.97177 | gap 1, opp_overlap 3374600, overlap 3374587 3374600 AGAGATAGACGCCCT TGCATAAAAAAACCGACC CTAG GGTCGGTTTTTTTAT-CA CTTATTGATTTTCGG TERM 3328 3374600 - 3374615 + T 100 -10.4 -5.66684 | opp_overlap 3374600, overlap 3374588 3374587 CCTTGCATAAAAAAA CCGACC CTAG GGTCGG TTTTTTTATCACTTA TERM 3329 3374615 - 3374600 - T 100 -10.4 -5.60993 | opp_overlap 3374600 3374588 3374587 CCTTGCATAAAAAAA CCGACC CTAG GGTCGG TTTTTTTATCACTTA Shew_2846 3375346 - 3374645 - | hypothetical protein TERM 3330 3375550 - 3375523 - R 77 -4.8 -4.98857 | opp_overlap 3375529, overlap 3375529 AGCGAAGCAGAAAAA CGAAAAGGAGCC CTAG GGCTCCTTTGTA AACTCACTGTCGGTT TERM 3331 3375544 - 3375529 - R 91 -10.4 -4.82678 | opp_overlap 3375529, overlap 3375523 GCAGAAAAACGAAAA GGAGCC CTAG GGCTCC TTTGTAAACTCACTG TERM 3332 3375529 - 3375544 + r 82 -10.4 -3.89822 | opp_overlap 3375523 3375529 GCAGAAAAACGAAAA GGAGCC CTAG GGCTCC TTTGTAAACTCACTG proA 3376863 - 3375574 - | gamma-glutamyl phosphate reductase Shew_2848 3378022 - 3376898 - | gamma-glutamyl kinase TERM 3333 3378155 - 3378137 - R 100 -9.6 -5.28826 | opp_overlap 3378137 AAAGCCCATAAAAAA GGCCATAC ATT GTATGACC TTTAATCTAAGCTGA Shew_2849 3379533 - 3378244 - | xanthine/uracil/vitamin C permease TERM 3334 3379477 - 3379459 - G 76 -6.6 -4.59773 | opp_overlap 3379459 GGCCATGGTTAAAAA GGTGGTCA ATC CGGCCACC ACCTCTTGTTTTAAC TERM 3335 3379647 - 3379634 - R 71 -8.1 -3.72231 | overlap 3379626 3379612 TTATATACGCAATAA TCGCG CAAA CGCGA GCCAGTTTAGAGCCA TERM 3336 3379769 - 3379751 - R 100 -14.6 -5.81412 | TTCAGGCAAAAAAAA GCCTGCTC AAA GAGCAGGC GAGACATGTTTCAAG Shew_2850 3380050 - 3379946 - | hypothetical protein TERM 3337 3380378 - 3380357 - R 100 -15.9 -4.83169 | ATCCGGCGACAAAAA GGGGCAAGC CTAT GCTTGCCCC GGTCAAATTTTGCGC Shew_2851 3381951 - 3380419 - | peptidase M17, leucyl aminopeptidase domain-containing protein Shew_2852 3382375 - 3383835 + | aminoacyl-histidine dipeptidase TERM 3338 3383868 - 3383885 + T 100 -11.3 -5.4505 | opp_overlap 3383868 3383882 TAACTGATGAGAAAA GGCGTCT AACA AGACGCC TTTTTTGTTGGCGAA TERM 3339 3383885 - 3383868 - T 100 -11.3 -4.48741 | opp_overlap 3383868, overlap 3383882 TAACTGATGAGAAAA GGCGTCT AACA AGACGCC TTTTTTGTTGGCGAA TERM 3340 3384352 - 3384333 - T 93 -10.6 -4.53705 | overlap 3384335 AACGCCCACATAAAA GGCGCGCC GTCA GGCGCGTC CAGCGTAACGAAGTG TERM 3341 3384350 - 3384335 - T 79 -11.8 -2.58418 | overlap 3384333 CGCCCACATAAAAGG CGCGCC GTCA GGCGCG TCCAGCGTAACGAAG Shew_2853 3384748 - 3384389 - | hypothetical protein TERM 3342 3384769 - 3384809 + r 100 -9.9 -5.21236 | gap 3, opp_overlap 3384779, overlap 3384781 ATGAGTACACCTAAC GC-CAAGCTAAGCGGCGCGC GTTA GCGCGTC-CTT-GCTTGAGC TTTTTGTTATACGTT TERM 3343 3384781 - 3384798 + r 70 -10.5 -2.63361 | opp_overlap 3384779, overlap 3384769 AACGCCAAGCTAAGC GGCGCGC GTTA GCGCGTC CTTGCTTGAGCTTTT Shew_2854 3385272 - 3384775 - | hypothetical protein Shew_2855 3385858 - 3385397 - | hypothetical protein TERM 3344 3386060 - 3386070 + r 76 -5.4 -4.78764 | CTCCCTATTAAATGG CTGA TGC TCAG TTTTTACTAAATTTA Shew_2856 3387568 - 3386915 - | ThiJ/PfpI domain-containing protein TERM 3345 3387930 - 3387920 - R 100 -4 -5.63103 | TGCTAATCAAAAAAA CTTT TGG AAAG CCGAACCTTCATTCC TERM 3346 3388388 - 3388368 - R 78 -8.3 -4.0371 | opp_overlap 3388367 3388368, overlap 3388370 3388374 CAGGCGTTAGATAAA GATGAAGGT GTG ACCTTCAAC CTTTCAGCCAATAAA TERM 3347 3388386 - 3388370 - R 77 -9.5 -3.61232 | opp_overlap 3388368 3388367, overlap 3388368 3388374 GGCGTTAGATAAAGA TGAAGGT GTG ACCTTCA ACCTTTCAGCCAATA Shew_2857 3389362 - 3388466 - | LysR family transcriptional regulator TERM 3348 3389440 - 3389454 + H 70 -2.8 -5.00616 | opp_overlap 3389426 3389440 AGTACGTAAATATTA GTACAG CCA CTATAC TTTTTTCAACGCAAA Shew_2858 3389550 - 3390734 + | acetyl-CoA acetyltransferase Shew_2859 3390755 - 3391429 + | phosphoglycerate mutase Shew_2860 3391405 - 3392703 + | acyl-CoA dehydrogenase domain-containing protein Shew_2861 3392700 - 3393737 + | aminoglycoside phosphotransferase Shew_2862 3393742 - 3394509 + | short chain dehydrogenase Shew_2863 3394524 - 3395270 + | short-chain dehydrogenase/reductase SDR Shew_2864 3395303 - 3397429 + | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding TERM 3349 3397511 - 3397492 - T 86 -10.6 -4.07877 | opp_overlap 3397493, overlap 3397493 TCAGCTGATAAACAA GGCGCGCC CTAG GGCGCGCT TTCGTCGTGATCGGA TERM 3350 3397493 - 3397510 + T 100 -14.1 -3.80573 | opp_overlap 3397492 3397493 CAGCTGATAAACAAG GCGCGCC CTAG GGCGCGC TTTCGTCGTGATCGG TERM 3351 3397510 - 3397493 - T 89 -14.1 -3.04244 | opp_overlap 3397493, overlap 3397492 CAGCTGATAAACAAG GCGCGCC CTAG GGCGCGC TTTCGTCGTGATCGG Shew_2865 3398365 - 3397601 - | TetR family transcriptional regulator Shew_2866 3398900 - 3400609 + | acyl-CoA synthetase Shew_2867 3400606 - 3403890 + | pyruvate carboxylase, propionyl-CoA carboxylase TERM 3352 3403941 - 3403967 + T 100 -18.8 -5.65177 | opp_overlap 3403941 TCAGATAAGCCCAAA GCCAGTCTGTGC GAC GCACAGGCTGGC TTTTTTTATCCCTGT TERM 3353 3403967 - 3403941 - T 100 -16.6 -3.70811 | opp_overlap 3403941 TCAGATAAGCCCAAA GCCAGTCTGTGC GAC GCACAGGCTGGC TTTTTTTATCCCTGT TERM 3354 3404328 - 3404300 - T 100 -10.4 -5.55698 | gap 1, opp_overlap 3404300 CAGAAGGTAAAAAAA TGCCAGCCTGAGA TCCC TCTC-GACTGGCA TTGCTACTGGTTCTG Shew_2868 3406223 - 3404415 - | acyl-CoA dehydrogenase domain-containing protein TERM 3355 3406317 - 3406265 - R 71 -9.8 -3.05715 | gap 1 AATTGGCCTAGTGAA CCG-CACTCTGGCACAGCGCCCTCA CGAG TGAGGGCGCTGTGGCGCAGGGACAA GATCTGCCCGGCCGA Shew_2869 3408375 - 3406441 - | peptidase S15 Shew_2870 3411158 - 3408585 - | TonB-dependent receptor TERM 3356 3411430 - 3411448 + r 70 -10.3 -2.62111 | opp_overlap 3411430, overlap 3411429 3411427 3411433 TAGCTCCCCTAAAAA CCCCTAC CCCTT GTAGGGG CTCGTTTTTTAAGCA TERM 3357 3411448 - 3411430 - R 89 -10.3 -4.57073 | opp_overlap 3411430 3411429 3411427 3411433 TAGCTCCCCTAAAAA CCCCTAC CCCTT GTAGGGG CTCGTTTTTTAAGCA TERM 3358 3411433 - 3411452 + r 70 -2.8 -5.02074 | gap 1, opp_overlap 3411430, overlap 3411430 3411429 3411427 CTCCCCTAAAAACCC CTA-CCCCT TGT AGGGGCTCG TTTTTTAAGCAATGC Shew_2871 3412909 - 3411830 - | DNA polymerase IV TERM 3359 3413007 - 3413022 + r 85 -10.4 -4.24623 | opp_overlap 3412996 3413007 GACAGGCAGCAAAAA GCCACC CTAA GGTGGC TTTATCTCTGTTTCG TERM 3360 3413022 - 3413007 - R 91 -10.4 -4.76041 | opp_overlap 3413007, overlap 3412996 GACAGGCAGCAAAAA GCCACC CTAA GGTGGC TTTATCTCTGTTTCG Shew_2872 3413544 - 3413077 - | bacterioferritin Shew_2873 3414028 - 3413555 - | bacterioferritin TERM 3361 3413907 - 3413927 + g 72 -2.5 -4.88067 | TTGTAGCACTTCTCA TTGAGCTCT TCC AGACCCCAA TTTTTGTACATGCGT TERM 3362 3414285 - 3414270 - R 100 -8.2 -5.7946 | opp_overlap 3414270 GGGGTAACAAAAAAA GGCCCC GAAT GGGACC TTTAATAATGACGCC Shew_2874 3414538 - 3414314 - | hypothetical protein TERM 3363 3414687 - 3414654 - R 72 -6.6 -4.19258 | overlap 3414640 3414676 AGACTGCATTCAAAA TGCGCCTAGCCACT ATATTA AGCGGGCCGGCGCA CCGATGGACGCTATT Shew_2875 3415722 - 3414706 - | ApbE family lipoprotein TERM 3364 3415700 - 3415678 - G 100 -10.6 -5.63517 | GGCCGAAATAAAAAA GGCTAGTCCC GCC AGGACTAACC CCTTGATAAAGGTCT TERM 3365 3415789 - 3415759 - R 100 -16.3 -3.0782 | gap 1, opp_overlap 3415760, overlap 3415747 TAACCCGGTAACACA CTCCCTAAGG-GCC TTTG GGCGCCTTAGGGAG CACGATAATCACGGC TERM 3366 3415842 - 3415855 + r 74 -6.7 -4.4261 | CTTAGCCGCCGAAGT CATCC AGCA GGATG TTTTCATCTTCAACA Shew_2876 3417075 - 3415828 - | Na(+)-translocating NADH-quinone reductase subunit F Shew_2877 3417732 - 3417124 - | Na(+)-translocating NADH-quinone reductase subunit E Shew_2878 3418370 - 3417738 - | Na(+)-translocating NADH-quinone reductase subunit D Shew_2879 3419164 - 3418370 - | Na(+)-translocating NADH-quinone reductase subunit C TERM 3367 3419027 - 3419041 + g 86 -7.2 -4.96427 | TTCAAGAATGTACTT TTGCTT ATC AAGCAA TTTGTTTTCTTGTTG Shew_2880 3420356 - 3419157 - | Na(+)-translocating NADH-quinone reductase subunit B Shew_2881 3421690 - 3420356 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 3368 3422068 - 3422054 - R 76 -2.7 -5.31456 | overlap 3422055 TTAACGCATAAAAAA TCGGC GAAAA GCCGG ACTGTTCGACTAAAG TERM 3369 3422195 - 3422208 + r 87 -8.1 -4.90296 | opp_overlap 3422195 ACAGATAGCCAAAAA GCAGC CTAA GCTGC TTTTTATGACATTTT TERM 3370 3422208 - 3422195 - R 85 -8.1 -4.73448 | opp_overlap 3422195 ACAGATAGCCAAAAA GCAGC CTAA GCTGC TTTTTATGACATTTT Shew_2882 3422778 - 3422269 - | S-ribosylhomocysteinase TERM 3371 3422948 - 3422976 + r 70 -6.7 -4.03413 | opp_overlap 3422950, overlap 3422950 GCCTAGAAACCAAAA AACCACAGCGG CGGTTAC CTGCTGTGGTC TTTGTATGGCGCAAT TERM 3372 3422950 - 3422974 + r 75 -9.3 -3.61232 | opp_overlap 3422950, overlap 3422948 CTAGAAACCAAAAAA CCACAGCGG CGGTTAC CTGCTGTGG TCTTTGTATGGCGCA TERM 3373 3422974 - 3422950 - R 100 -8.6 -5.42514 | gap 1, opp_overlap 3422950 3422948 CTAGAAACCAAAAAA CCACAGC-GGC GGTT ACCTGCTGTGG TCTTTGTATGGCGCA Shew_2883 3423337 - 3423038 - | BolA family protein Shew_2884 3423966 - 3423463 - | glycine cleavage system regulatory protein-like protein Shew_2885 3424743 - 3424096 - | 2OG-Fe(II) oxygenase TERM 3374 3426027 - 3426009 - g 79 -8.8 -4.31379 | overlap 3426011 ATCAAGTCAGCAAAA GAGCCGGT TAA ACCGGCTA AAGATGTGAACGAGC TERM 3375 3426025 - 3426011 - g 80 -11.4 -3.75571 | overlap 3426009 CAAGTCAGCAAAAGA GCCGGT TAA ACCGGC TAAAGATGTGAACGA Shew_2886 3424854 - 3426059 + | rRNA (guanine-N(2)-)-methyltransferase TERM 3376 3426141 - 3426112 - T 83 -12.3 -3.04322 | opp_overlap 3426119, overlap 3426119 CTTAACTTGCGAACA CAAAAAACAGGGC CTGG GCCCTGTTTTTTT TTATGAGTCGAGCTT TERM 3377 3426134 - 3426119 - T 100 -10.4 -5.47159 | opp_overlap 3426119, overlap 3426112 TGCGAACACAAAAAA CAGGGC CTGG GCCCTG TTTTTTTTTATGAGT TERM 3378 3426119 - 3426134 + T 100 -10.4 -6.24157 | opp_overlap 3426119 3426112 TGCGAACACAAAAAA CAGGGC CTGG GCCCTG TTTTTTTTTATGAGT Shew_2887 3427148 - 3426234 - | sterol desaturase family protein Shew_2888 3428264 - 3427212 - | hypothetical protein TERM 3379 3428295 - 3428318 + H 80 -6.7 -4.75404 | gap 2 TTATCTTTGTTATCT GGCTGACGGCC ACTT GGCCG-C-GCC TTTTTAGTGGAATTT Shew_2889 3428466 - 3429032 + | uncharacterized lipoprotein Shew_2890 3429052 - 3429636 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type Shew_2891 3429823 - 3430155 + | hypothetical protein TERM 3380 3430193 - 3430214 + F 91 -8.7 -5.14563 | opp_overlap 3430193 TCGTCAAAAAGCCAA GCTCAGTCT TTCG GGACTGGGC TTTTTTCATGACGGA Shew_2892 3430301 - 3431719 + | major facilitator transporter TERM 3381 3431792 - 3431761 - T 100 -17.5 -3.81019 | opp_overlap 3431767, overlap 3431767 ATAAACAACAGACAA TAAAAAGCCCCGC TCACCG GCGGGGCTTTTTA ATCAGAGCTTGACGC TERM 3382 3431786 - 3431767 - T 100 -12.1 -5.28561 | opp_overlap 3431767, overlap 3431761 AACAGACAATAAAAA GCCCCGC TCACCG GCGGGGC TTTTTAATCAGAGCT TERM 3383 3431767 - 3431786 + T 100 -12.8 -4.7254 | opp_overlap 3431767 3431761 AACAGACAATAAAAA GCCCCGCT CACC GGCGGGGC TTTTTAATCAGAGCT Shew_2893 3432317 - 3431832 - | nucleotide-binding protein Shew_2894 3432475 - 3432855 + | VanZ family protein Shew_2895 3432852 - 3433772 + | 2-dehydropantoate 2-reductase Shew_2896 3433919 - 3435430 + | sodium:neurotransmitter symporter TERM 3384 3435526 - 3435554 + T 90 -12.4 -3.32769 | opp_overlap 3435526 AAGCGCAAACAAAAA GAGGAGGCCGAC GATTA GCCGGTCTCCTC TTACTCATTTCACCA TERM 3385 3435554 - 3435526 - T 100 -12.4 -5.29846 | opp_overlap 3435526 AAGCGCAAACAAAAA GAGGAGGCCGAC GATTA GCCGGTCTCCTC TTACTCATTTCACCA Shew_2897 3436471 - 3435587 - | LysR family transcriptional regulator TERM 3386 3435844 - 3435822 - G 70 -3.3 -4.79352 | overlap 3435823 TTATCCAGAATAAAA TCCAGCGCG ATACG CCCGGTGGA GGTACGCAGATAAGG TERM 3387 3436642 - 3436658 + G 88 -3 -5.52384 | TCAGAAGATTCATTT CGTTTT GGTCA AAAGCG TTTTTTTGATGACAA TERM 3388 3436939 - 3436899 - g 79 -2.5 -5.26875 | overlap 3436914 3436917 CCGCGAACCAAAAAA GTTCCACACCCTAAACAGC ACG ACTAATAAGCGTGTTGAAC AGTATGAATATGTGG Shew_2898 3436624 - 3436983 + | hypothetical protein Shew_2899 3436987 - 3438021 + | glutathione synthetase Shew_2900 3438008 - 3439999 + | hypothetical protein TERM 3389 3440020 - 3440058 + F 95 -12.5 -3.62002 | gap 1, overlap 3440015 3440021 CCCTTTCTCGGTCGC TCGTCATGGCGGCAAGGT TAAT GCC-TGCCGTCATGACGC TTACTTATTCTCTTC TERM 3390 3440021 - 3440057 + F 100 -16 -2.76117 | gap 1, overlap 3440020 3440015 CCTTTCTCGGTCGCT CGTCATGGCGGCAAGGT TAAT GCC-TGCCGTCATGACG CTTACTTATTCTCTT Shew_2901 3440234 - 3440908 + | phosphoesterase, PA-phosphatase related Shew_2902 3441052 - 3442491 + | methyl-accepting chemotaxis sensory transducer Shew_2903 3443431 - 3442499 - | hypothetical protein TERM 3391 3443603 - 3443586 - R 100 -14.1 -4.82154 | opp_overlap 3443579 AACGGACATCAAAAA GCCCCGC ACAG GCGGGGC TTCAGCATTATGTCG Shew_2904 3444501 - 3443653 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 3392 3444538 - 3444522 - R 83 -10.8 -3.61398 | CTTCTCTCTTAAGAA GCCGGG GCAAG CCCGGC AGGAATCAAATTCTT Shew_2905 3445841 - 3444564 - | hypothetical protein TERM 3393 3444702 - 3444675 - G 71 -11.2 -3.05596 | gap 1 CAGGGCCGGATGGAA GGCCGCGGCCACC ACG GGCG-CCGAGGCC GCACCGCCGACGTTG TERM 3394 3445727 - 3445707 - G 73 -5.3 -4.64076 | opp_overlap 3445710, overlap 3445709 AATGAAACGATAAAA CTTCACCCA GAA TGGGTGCTG GCTGCTATTGGTATA Shew_2906 3446756 - 3445968 - | hypothetical protein TERM 3395 3446709 - 3446733 + g 77 -13.6 -2.92613 | opp_overlap 3446709, overlap 3446706 CTCGGAAATATCAAA GGCGCTCTCT GGAAG GGAGAGCGCC TCGTTTAAGATCAGG TERM 3396 3446733 - 3446709 - G 89 -12.9 -4.00532 | opp_overlap 3446709 3446706 CTCGGAAATATCAAA GGCGCTCTC TGGAAGG GAGAGCGCC TCGTTTAAGATCAGG Shew_2907 3447142 - 3446756 - | invasion gene expression up-regulator, SirB Shew_2908 3448204 - 3447269 - | LysR family transcriptional regulator Shew_2909 3448269 - 3448682 + | GCN5-related N-acetyltransferase TERM 3397 3448712 - 3448692 - T 76 -8.4 -4.00348 | CTCTAAGCAATTAAA TCTAAGCT AACCA AGCTTAGA GAATCAATTTTGACC Shew_2910 3449012 - 3448770 - | hypothetical protein TERM 3398 3448926 - 3448952 + g 70 -10.9 -3.23216 | GGCCGCCTCGGTCTG CTCGCTGAGCA CAGGT TGCTTGGCGAG TTGCTGATAATACAA TERM 3399 3449143 - 3449110 - R 100 -12.5 -4.36063 | opp_overlap 3449115, overlap 3449115 ACAATATTACGAAAA GAAAACGCCACAGGC TCAG GCCCATGGCGTTTTT AGTGTCGCGCGGTGA TERM 3400 3449138 - 3449115 - R 100 -12.4 -5.14626 | opp_overlap 3449115, overlap 3449110 ATTACGAAAAGAAAA CGCCACAGGC TCAG GCCCATGGCG TTTTTAGTGTCGCGC TERM 3401 3449115 - 3449138 + r 86 -8 -4.8048 | opp_overlap 3449115 3449110 ATTACGAAAAGAAAA CGCCACAGGC TCAG GCCCATGGCG TTTTTAGTGTCGCGC Shew_2911 3450044 - 3449202 - | HemK family modification methylase prfA 3451168 - 3450083 - | peptide chain release factor 1 hemA 3452432 - 3451182 - | glutamyl-tRNA reductase TERM 3402 3451989 - 3452013 + g 75 -9.3 -4.09243 | opp_overlap 3451947, overlap 3451962 3451991 CTCTGTCTCGGTGCG CACCTTCTTGG CCA CCGAGAAGGTA TTTTGGAACAGTCTG TERM 3403 3451991 - 3452011 + g 79 -11.9 -3.6422 | opp_overlap 3451947, overlap 3451962 3451989 CTGTCTCGGTGCGCA CCTTCTTGG CCA CCGAGAAGG TATTTTGGAACAGTC TERM 3404 3452635 - 3452609 - H 71 -8.1 -3.72576 | gap 1, overlap 3452627 CTTTTTTCTATTAAA CCTGAG-GCTTA AAAT CAAGCCCTCAGG CCCTTGCGAAAATTA TERM 3405 3453132 - 3453157 + G 91 -15.5 -3.60296 | gap 1 GATACCGGTCGACAC CCTGCCCCTGTG GAT CAC-GGGGCAGG TTTCCGCTCAGGATG Shew_2914 3452752 - 3453402 + | outer membrane lipoprotein LolB TERM 3406 3453734 - 3453677 - g 83 -4.1 -5.24129 | gap 2, overlap 3453679 TGGCTGGATAAAAAA CTGCCAATG-GGCGGCGGCATAGG-TG GCGGCT CATCCGATGCGGCCACCACACTGGTCG CCCTGAATCATCTGT Shew_2915 3453389 - 3454243 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Shew_2916 3454282 - 3455256 + | ribose-phosphate pyrophosphokinase TERM 3407 3455285 - 3455302 + T 100 -11.3 -5.4251 | opp_overlap 3455285 AGGGTAACGAAAAAA GCCACTC AATC GAGTGGC TTTTTTGTATCTAGC TERM 3408 3455302 - 3455285 - T 100 -11.3 -5.27477 | opp_overlap 3455285 AGGGTAACGAAAAAA GCCACTC AATC GAGTGGC TTTTTTGTATCTAGC Shew_2917 3455763 - 3455356 - | hypothetical protein Shew_2918 3456282 - 3455776 - | hypothetical protein TERM 3409 3456484 - 3456468 - R 100 -8 -5.77988 | opp_overlap 3456467 3456468, overlap 3456452 ACAGATACAAAAAAA CCTGTC ACTTG GACAGG CTCTTTGCAATCTTA TERM 3410 3457238 - 3457252 + r 71 -4.2 -4.78572 | CCGGTGCCTTACCGC TTGGCG ATA CCCCAA TTTTCTTGCTTAAGA TERM 3411 3457752 - 3457730 - R 100 -11.3 -4.61873 | opp_overlap 3457724 TGGGATAAAGCAAAA CGGCCCGAT GGAGT ATCGAGCCG CTTAAGCGTTTATTG Shew_2919 3458888 - 3457797 - | translation-associated GTPase Shew_2920 3459546 - 3458959 - | peptidyl-tRNA hydrolase Shew_2921 3460843 - 3459650 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase TERM 3412 3461267 - 3461245 - g 73 -5.5 -4.62069 | opp_overlap 3461257, overlap 3461248 GCGTCAGGCCAAAAA CAGCAGCCA GGCGA TGGCCGATG CCTTCTTTACTCAGA Shew_2922 3461042 - 3461344 + | hypothetical protein TERM 3413 3461645 - 3461617 - g 72 -2.3 -4.85177 | overlap 3461610 3461620 3461621 AAAGCACAGGAAAAA GTATTCCACCAGC TGG GTCGCTGGAAGAC GCTAAAAGACAAGAA Shew_2923 3461443 - 3462867 + | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 3414 3462892 - 3462907 + F 100 -10.4 -5.45652 | opp_overlap 3462892 3462880 AAATGCGAATTGAAA GCGACC CCAG GGTCGC TTTTTTATTGCACAT TERM 3415 3462907 - 3462892 - f 80 -10.4 -3.77241 | opp_overlap 3462892, overlap 3462880 AAATGCGAATTGAAA GCGACC CCAG GGTCGC TTTTTTATTGCACAT Shew_2924 3463109 - 3464152 + | PhoH family protein TERM 3416 3464570 - 3464551 - g 70 -5 -4.3953 | opp_overlap 3464551, overlap 3464553 GCGAAGCAGAAGAAA TGGAGTCT TTAG AGACTCAA CTTATTGAAAGTTTG Shew_2925 3464142 - 3464615 + | putative metalloprotease Shew_2926 3464643 - 3465518 + | CBS domain-containing protein TERM 3417 3466683 - 3466696 + G 79 -3.7 -5.0538 | opp_overlap 3466683 TGGAAGATCTATTAA GGCCG CTGG CGCCC TTTTTTAACCTGCCC Shew_2927 3465545 - 3467158 + | apolipoprotein N-acyltransferase TERM 3418 3467231 - 3467202 - T 87 -13.7 -2.94595 | opp_overlap 3467208, overlap 3467208 AATTTCGAGCAGATA CAAAAATCCCCGC ATTG GCGGGGATTTTTT ATGAGCCGGTCAGAC TERM 3419 3467225 - 3467208 - T 100 -12.7 -5.05601 | opp_overlap 3467208, overlap 3467202 GAGCAGATACAAAAA TCCCCGC ATTG GCGGGGA TTTTTTATGAGCCGG TERM 3420 3467208 - 3467225 + T 100 -12.7 -5.24129 | opp_overlap 3467208 3467202 GAGCAGATACAAAAA TCCCCGC ATTG GCGGGGA TTTTTTATGAGCCGG Shew_2928 3467805 - 3467305 - | hypothetical protein TERM 3421 3468272 - 3468256 - g 76 -5.1 -4.82667 | opp_overlap 3468256 CGATTACATGAAAAA CCAGC TGAAGAT GCTGG GTTTCGGCTACGACT leuS 3467927 - 3470518 + | leucyl-tRNA synthetase TERM 3422 3470529 - 3470555 + F 100 -16.6 -3.30124 | opp_overlap 3470520 3470519, overlap 3470531 ACTAACTGCCCGCTT TACTCGGCCACC TCT GGTGGCCGAGTC TTATCAAACATGGAA TERM 3423 3470531 - 3470553 + F 100 -19.2 -3.21924 | opp_overlap 3470520 3470519, overlap 3470529 TAACTGCCCGCTTTA CTCGGCCACC TCT GGTGGCCGAG TCTTATCAAACATGG Shew_2930 3470587 - 3471081 + | rare lipoprotein B TERM 3424 3471658 - 3471633 - g 82 -13.3 -3.50869 | GATCAGGCGATACAA CTGCTGGTGCT ACTC AGCCCCAGCAG CCAGATCACCAGCGA Shew_2931 3471081 - 3472112 + | DNA polymerase III, delta subunit Shew_2932 3472124 - 3472765 + | nicotinate (nicotinamide) nucleotide adenylyltransferase Shew_2933 3472893 - 3473240 + | iojap-like protein Shew_2934 3473240 - 3473710 + | SPOUT methyltransferase superfamily protein TERM 3425 3473981 - 3473999 + G 75 -9.5 -3.83026 | GCATCCGCGTCGTGC CCGTGGC GCCAA GCCGCGG TTTGATCTACGACAG Shew_2935 3473788 - 3475671 + | peptidoglycan glycosyltransferase TERM 3426 3476326 - 3476315 - g 72 -2.2 -4.87665 | gap 1, opp_overlap 3476320, overlap 3476317 CTGGATCCAGAAAAA GACCC GCT GGG-C GCCGGCTATCATATT Shew_2936 3475658 - 3476764 + | rod shape-determining protein RodA TERM 3427 3477585 - 3477561 - g 78 -12.9 -3.29461 | GAAGCTCTCCTACAA GGTTGCCGACA TCC TGTCGCCAACC ATCTCCCTGGCGCAG Shew_2937 3476776 - 3477783 + | lytic murein transglycosylase B Shew_2938 3477764 - 3478561 + | rare lipoprotein A Shew_2939 3478697 - 3479869 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 3428 3479903 - 3479918 + F 100 -9 -5.93252 | opp_overlap 3479903 ATGAGATAGTAAAAA GTCACC TAAG GGTGAC TTTTTTGTTTTTAGC TERM 3429 3479918 - 3479903 - f 90 -9 -4.85129 | opp_overlap 3479903 ATGAGATAGTAAAAA GTCACC TAAG GGTGAC TTTTTTGTTTTTAGC Shew_2940 3480004 - 3480270 + | hypothetical protein Shew_2941 3480360 - 3481016 + | lipoate-protein ligase B Shew_2942 3481018 - 3481983 + | lipoyl synthase TERM 3430 3482062 - 3482032 - T 91 -11.3 -3.89614 | opp_overlap 3482038, overlap 3482005 3482038 TTCAACGCTTAGAAA CAAAAATAGCGCC CTTGC GGCGCTATTTTTT TATTCCCGAGTACAA TERM 3431 3482038 - 3482056 + T 100 -10.3 -5.7946 | opp_overlap 3482032 3482038 GCTTAGAAACAAAAA TAGCGCC CTTGC GGCGCTA TTTTTTTATTCCCGA TERM 3432 3482056 - 3482038 - T 100 -10.3 -5.38054 | opp_overlap 3482038, overlap 3482032 GCTTAGAAACAAAAA TAGCGCC CTTGC GGCGCTA TTTTTTTATTCCCGA Shew_2943 3482537 - 3482088 - | ribosomal-protein-alanine acetyltransferase TERM 3433 3482282 - 3482268 - G 71 -11.4 -3.15544 | TGCCAGCTCGATTAA CGCCTC GGT GAGGCG CTTACCCAAACCTTG Shew_2944 3482838 - 3482515 - | hypothetical protein TERM 3434 3482999 - 3482980 - R 100 -12.2 -5.1417 | opp_overlap 3482980 TCAGAAAAGCAAAAA GCCGTTCA TTTC TGAACGGC TTCTCTAGAATGTGG TERM 3435 3482980 - 3482999 + r 88 -12.2 -3.51365 | opp_overlap 3482980 TCAGAAAAGCAAAAA GCCGTTCA TTTC TGAACGGC TTCTCTAGAATGTGG TERM 3436 3483889 - 3483875 - R 71 -4.2 -4.85653 | TACACATAAAAGAAA GGCATT TGC ATTGCC AGATCCTACGCAGAT TERM 3437 3484314 - 3484280 - R 82 -12.3 -2.84126 | opp_overlap 3484288, overlap 3484288 TCATAAACCTCAAAC GCAAAAAAGCCACCT TATTC AGGTGGCTTCTTCAC TTAATTAGGCGCCTG TERM 3438 3484288 - 3484306 + r 80 -10.3 -3.75598 | opp_overlap 3484280 3484288 CTCAAACGCAAAAAA GCCACCT TATTC AGGTGGC TTCTTCACTTAATTA TERM 3439 3484306 - 3484288 - R 100 -10.3 -5.22039 | opp_overlap 3484288, overlap 3484280 CTCAAACGCAAAAAA GCCACCT TATTC AGGTGGC TTCTTCACTTAATTA TERM 3440 3485719 - 3485730 + r 71 -4.4 -4.7254 | CATCTTGCGATTTTG CACA GTGC TGTG TTTTTGATAAACAGT TERM 3441 3487021 - 3487033 + r 82 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3442 3489555 - 3489565 + r 75 -4.6 -5.01732 | CGCCTCTCCCTGTCG GCGT CAA GCGC TTTTTTCAAAAGATT TERM 3443 3489922 - 3489906 - R 71 -3.7 -4.83169 | AGTTTGGCACAAAAA TTTCGAC TCT GCCAAAA ATCTGAGCTGCCTGA Shew_2945 3490973 - 3490137 - | CDP-diacylglycerol--serine O-phosphatidyltransferase Shew_2946 3491095 - 3491550 + | hypothetical protein TERM 3444 3491618 - 3491659 + T 71 -3.9 -4.81249 | gap 1, opp_overlap 3491618 3491620 3491622, overlap 3491622 GAAGCAGAGAAAAAA TAGAGAAGCGACAACC CAAATGACTCT GGCTGTCGCTTCT-TA TTTTTAGGTTTACCG TERM 3445 3491659 - 3491618 - T 100 -8.9 -5.42131 | gap 1, opp_overlap 3491618 3491622, overlap 3491620 3491622 GAAGCAGAGAAAAAA TAGAGAAGCGACAACCCAAA TGA CTCTGGCTGTCGCTTCT-TA TTTTTAGGTTTACCG TERM 3446 3491658 - 3491620 - T 86 -9.6 -4.32846 | opp_overlap 3491618 3491622, overlap 3491618 3491622 AGCAGAGAAAAAATA GAGAAGCGACAACCCAAA TGA CTCTGGCTGTCGCTTCTT ATTTTTAGGTTTACC TERM 3447 3491622 - 3491656 + T 80 -7.2 -4.50298 | opp_overlap 3491620 3491618 3491622, overlap 3491618 CAGAGAAAAAATAGA GAAGCGACAACC CAAATGACTCT GGCTGTCGCTTC TTATTTTTAGGTTTA TERM 3448 3491656 - 3491622 - T 93 -12.2 -3.74646 | opp_overlap 3491622 3491618, overlap 3491620 3491618 CAGAGAAAAAATAGA GAAGCGACAACCCAAA TGA CTCTGGCTGTCGCTTC TTATTTTTAGGTTTA Shew_2947 3492017 - 3491700 - | hypothetical protein TERM 3449 3492143 - 3492124 - R 100 -12.2 -5.64274 | opp_overlap 3492124 CCAGTGATAAAAAAA GCCCAAAC CTAG GTTTGGGC TTCTTGCATAAGGCT TERM 3450 3492124 - 3492143 + r 89 -12.2 -3.67775 | opp_overlap 3492124 CCAGTGATAAAAAAA GCCCAAAC CTAG GTTTGGGC TTCTTGCATAAGGCT Shew_2948 3494737 - 3492164 - | ATPase TERM 3451 3494775 - 3494761 - R 72 -8.6 -3.57457 | opp_overlap 3494760 3494758, overlap 3494757 CTAAAAATTAACGAA TGAAGG AAA CCTTCA GTGCTTTGTTACCAG Shew_2949 3495571 - 3494852 - | hypothetical protein Shew_2950 3496542 - 3495571 - | RluA family pseudouridine synthase Shew_2951 3496666 - 3497424 + | putative lipoprotein TERM 3452 3497467 - 3497448 - f 78 -10.6 -3.27511 | opp_overlap 3497449, overlap 3497446 3497449 ATAATTGAATTAAGA GGCCCCGC AACT GCGGGGCT TTTTTTGATCTGTTT TERM 3453 3497449 - 3497466 + F 100 -14.1 -5.62219 | opp_overlap 3497448 3497446 3497449 TAATTGAATTAAGAG GCCCCGC AACT GCGGGGC TTTTTTTGATCTGTT TERM 3454 3497466 - 3497449 - f 87 -14.1 -2.55784 | opp_overlap 3497449, overlap 3497448 3497446 TAATTGAATTAAGAG GCCCCGC AACT GCGGGGC TTTTTTTGATCTGTT TERM 3455 3497923 - 3497961 + F 100 -16.2 -3.25073 | opp_overlap 3497902 3497934, overlap 3497934 GGGTGCCTAGCGCAC CACACAAAAAAGCCTCGC ACT GCGAGGCTTTTTTGTTTC TATTCATCTTACCCA TERM 3456 3497950 - 3497934 - f 100 -13.7 -5.39721 | opp_overlap 3497923 3497934 GCACCACACAAAAAA GCCTCGC ACT GCGAGGC TTTTTTGTTTCTATT TERM 3457 3497934 - 3497950 + F 100 -13.7 -5.7827 | opp_overlap 3497934, overlap 3497923 GCACCACACAAAAAA GCCTCGC ACT GCGAGGC TTTTTTGTTTCTATT Shew_2952 3498055 - 3499680 + | methyl-accepting chemotaxis sensory transducer Shew_2953 3501262 - 3499682 - | diguanylate cyclase TERM 3458 3501376 - 3501363 - R 100 -9.5 -6.10489 | opp_overlap 3501363 3501363 AATTTCAAAAAAAAA GGGGC CTAA GCCCC CTTTCTAAATCAACC TERM 3459 3501363 - 3501376 + r 70 -9.5 -2.94924 | opp_overlap 3501363, overlap 3501363 AATTTCAAAAAAAAA GGGGC CTAA GCCCC CTTTCTAAATCAACC Shew_2954 3503256 - 3501394 - | methyl-accepting chemotaxis sensory transducer Shew_2955 3503518 - 3504462 + | ornithine cyclodeaminase TERM 3460 3504482 - 3504530 + F 100 -12.5 -4.25848 | gap 1, opp_overlap 3504479 3504482, overlap 3504484 TATAAGATGACATCA TGGGGCGGCTAAGCTAGTACAG CTAATC CAGTAC-AGCTAAGCCGCCCTG TTTTCATAGCCCCTT TERM 3461 3504484 - 3504528 + F 100 -15.1 -3.73042 | gap 1, opp_overlap 3504482 3504479, overlap 3504482 TAAGATGACATCATG GGGCGGCTAAGCTAGTACAG CTAATC CAGTAC-AGCTAAGCCGCCC TGTTTTCATAGCCCC Shew_2956 3504734 - 3505306 + | ECF subfamily RNA polymerase sigma-24 factor Shew_2957 3505306 - 3505818 + | hypothetical protein Shew_2958 3505815 - 3506762 + | hypothetical protein TERM 3462 3506795 - 3506822 + T 100 -12.8 -4.25053 | opp_overlap 3506800, overlap 3506800 CGAATCTTCGCATCA AAAAAGGGCCTG ATAT CAGGCCCTTTTG TTATTTCTCTTATCA TERM 3463 3506800 - 3506817 + T 100 -12.7 -5.06472 | opp_overlap 3506800, overlap 3506795 CTTCGCATCAAAAAA GGGCCTG ATAT CAGGCCC TTTTGTTATTTCTCT TERM 3464 3506817 - 3506800 - T 100 -12.7 -5.14563 | opp_overlap 3506800 3506795 CTTCGCATCAAAAAA GGGCCTG ATAT CAGGCCC TTTTGTTATTTCTCT Shew_2959 3507763 - 3506843 - | LysR family transcriptional regulator TERM 3465 3509052 - 3509036 - g 77 -3 -5.02074 | TCAGCCTGGAAAAAA TGTATG AGTTG CACACA GACGTGGGACCTAAA Shew_2960 3508399 - 3513378 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 3466 3513410 - 3513428 + T 100 -16 -5.24531 | TTCGACCTTGTCTTT GGGCCCTC TTT GAGGGCCC TTTTTTATGCCACCT Shew_2961 3513693 - 3513460 - | hypothetical protein TERM 3467 3513957 - 3513928 - R 100 -15.9 -3.17325 | opp_overlap 3513935, overlap 3513935 ATCTTGTATAAGACA CAAAAAAGCCGCC CTGA GGCGGCTTTTTTA AAGCGCAAACGGCTA TERM 3468 3513950 - 3513935 - R 100 -11.8 -5.48787 | opp_overlap 3513935, overlap 3513928 ATAAGACACAAAAAA GCCGCC CTGA GGCGGC TTTTTTAAAGCGCAA TERM 3469 3513935 - 3513950 + r 100 -11.8 -5.00616 | opp_overlap 3513935 3513928 ATAAGACACAAAAAA GCCGCC CTGA GGCGGC TTTTTTAAAGCGCAA Shew_2962 3515672 - 3513984 - | malate dehydrogenase TERM 3470 3515845 - 3515864 + r 73 -9.2 -3.5627 | opp_overlap 3515847, overlap 3515847 CGCCAGGCATAAAAA AACGCGGC CTGA GCCGCGTC TTTAGCGAATGATAT TERM 3471 3515862 - 3515847 - R 100 -11.8 -5.64274 | opp_overlap 3515845 3515847 CCAGGCATAAAAAAA CGCGGC CTGA GCCGCG TCTTTAGCGAATGAT TERM 3472 3515847 - 3515862 + r 85 -11.8 -3.35775 | opp_overlap 3515847, overlap 3515845 CCAGGCATAAAAAAA CGCGGC CTGA GCCGCG TCTTTAGCGAATGAT Shew_2963 3516347 - 3515883 - | hypothetical protein Shew_2964 3517545 - 3516403 - | beta-lactamase Shew_2965 3518836 - 3517568 - | putative manganese transporter TERM 3473 3518108 - 3518084 - G 100 -14.3 -4.06678 | ACCGAGCGAGAGAAA CACCACGGCCA GTA TCGCCGTGGTG ATGAAGCCCAGATTA Shew_2966 3519486 - 3518956 - | membrane-flanked domain-containing protein Shew_2967 3519716 - 3522289 + | TonB-dependent receptor TERM 3474 3522489 - 3522470 - f 100 -12.2 -4.84761 | opp_overlap 3522470 ACACTGTCACAAAAA TGGCATCC AAAT GGATGCCA TTTTTATTTACACTC TERM 3475 3522470 - 3522489 + F 100 -12.2 -5.28942 | opp_overlap 3522470 ACACTGTCACAAAAA TGGCATCC AAAT GGATGCCA TTTTTATTTACACTC TERM 3476 3523160 - 3523140 - g 74 -3.1 -5.00616 | opp_overlap 3523155 GCGCGCTGGAAAAAA CCGAAGCCG TCG CCGCTCAGG CAGCAGAGTAGTTAG Shew_2968 3522536 - 3523171 + | glutathione S-transferase domain-containing protein TERM 3477 3523188 - 3523227 + T 70 -9.5 -2.88544 | opp_overlap 3523185 TAGGCGTAAAAGGTT TAGCAGCATAATGTCTA ACGCTA TAGAGATTATGCTGCCA TCTATAGCCATGAGG Shew_2969 3523908 - 3523288 - | hypothetical protein TERM 3478 3524018 - 3523997 - R 100 -9.4 -5.3671 | opp_overlap 3523997 AAGATAATTAAAAAA GCCCCGCT TTAACG AGCAGGGC TTTTTTATCGAATCA TERM 3479 3523997 - 3524018 + r 91 -7.9 -5.26316 | opp_overlap 3523997 AAGATAATTAAAAAA GCCCCGCTT TAAC GAGCAGGGC TTTTTTATCGAATCA Shew_2970 3524543 - 3524043 - | hypothetical protein Shew_2971 3524981 - 3524580 - | hypothetical protein TERM 3480 3524710 - 3524694 - G 70 -5.1 -4.39568 | ATCGATACAGTAAAA GTCATCA CCC TGCTGAC AGATGGCGATATATT Shew_2972 3526125 - 3525343 - | hypothetical protein TERM 3481 3526253 - 3526238 - R 100 -10.4 -5.77988 | opp_overlap 3526238 ACAGACATAAAAAAA GAGCGC CAAG GCGCTC TTTTTCATCGAGAAA TERM 3482 3526238 - 3526253 + r 91 -10.4 -4.72272 | opp_overlap 3526238 ACAGACATAAAAAAA GAGCGC CAAG GCGCTC TTTTTCATCGAGAAA Shew_2973 3528360 - 3526276 - | endothelin-converting protein 1 TERM 3483 3527263 - 3527281 + g 74 -12.4 -3.14051 | overlap 3527260 GTTTACCGTGCTCAC GCCGCGCT TCC AGCGTGGC TGTTGCTCAGCCTGG TERM 3484 3528240 - 3528251 + g 74 -7.2 -4.2074 | TCAGGGCCTGTTGTA CCGC TACT GCGG TTTCTGTCTTGGCGG Shew_2974 3529103 - 3528561 - | hexapaptide repeat-containing transferase TERM 3485 3529936 - 3529983 + G 73 -12.8 -2.66711 | gap 1, opp_overlap 3529953, overlap 3529935 CTGGCACCGGGTGAA TG-GCGCTACCTGACAGAGGCTG AGA TAGCCTCGGTAAAGTAGCGCACA GTTATCAATTATCGG Shew_2975 3529285 - 3529977 + | pseudouridine synthase Shew_2976 3530429 - 3529992 - | hypothetical protein TERM 3486 3530031 - 3530049 + g 71 -8.8 -3.70751 | GATGCTGTTGAGCAG GGCGCG GTCGGTG CGCGCC TTCTTCAGCTTCTTC TERM 3487 3531437 - 3531420 - g 83 -11.3 -3.87373 | GATACCGGCGATAAA GATGGCG CCAA CGCCATC AAGACGGAGATAGGC Shew_2977 3530664 - 3532616 + | diguanylate cyclase Shew_2978 3533427 - 3532681 - | extracellular solute-binding protein Shew_2979 3533864 - 3535027 + | putative iron-sulfur cluster binding protein Shew_2980 3535441 - 3535238 - | hypothetical protein TERM 3488 3535517 - 3535539 + r 90 -12.8 -3.35996 | opp_overlap 3535517, overlap 3535521 CTATTACCGAAAAAA GAAACCACCT CTA GGGTGGTTTC TTATCCATAGGCCTG TERM 3489 3535539 - 3535517 - R 100 -12.1 -5.1101 | opp_overlap 3535517 3535521 CTATTACCGAAAAAA GAAACCACC TCTAG GGTGGTTTC TTATCCATAGGCCTG TERM 3490 3535521 - 3535535 + r 79 -7.8 -4.33417 | opp_overlap 3535517, overlap 3535517 TACCGAAAAAAGAAA CCACCT CTA GGGTGG TTTCTTATCCATAGG Shew_2981 3537531 - 3535567 - | beta-lactamase domain-containing protein Shew_2982 3539376 - 3537658 - | glucose-methanol-choline oxidoreductase Shew_2983 3540067 - 3539414 - | Tat pathway signal sequence domain-containing protein TERM 3491 3540221 - 3540197 - H 71 -4.1 -4.76075 | overlap 3540198 AGGAGATTAACAAAA GGTAGCGAGGC GGC GACCCGCCACA AAAGCGCCTAGACTA TERM 3492 3540890 - 3540872 - g 73 -12.4 -3.01712 | CGCCCTGTCGGAAGA GGCCAAGG TCG CCCTGGCC AAGGGGGCCGAACTT Shew_2984 3540273 - 3541823 + | ferredoxin-dependent glutamate synthase Shew_2985 3542173 - 3543687 + | Sel1 domain-containing protein TERM 3493 3543817 - 3543794 - T 100 -9.4 -5.20154 | opp_overlap 3543794 ACATAAGCCAAAAAA GGGTGGCCAG TAAG CAGGCCCCCC TTAGTCTAAAAACGG TERM 3494 3543794 - 3543817 + T 72 -9.4 -3.25823 | opp_overlap 3543794 ACATAAGCCAAAAAA GGGTGGCCAG TAAG CAGGCCCCCC TTAGTCTAAAAACGG Shew_2986 3546125 - 3543846 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 3495 3544254 - 3544242 - G 74 -10.5 -3.61178 | CGCACTGAGTTTAAA GGCGG CCA CCGCC CAGTCGAGGTAATGC Shew_2987 3546326 - 3547225 + | LysR family transcriptional regulator TERM 3496 3547261 - 3547285 + T 77 -7.2 -4.4009 | opp_overlap 3547266, overlap 3547266 TAAAATTAAGGCACA AAAAACCTGC ACTCG GCAGGTTTTC TTTTATCAAGTGACA TERM 3497 3547280 - 3547266 - T 91 -7.1 -5.31456 | opp_overlap 3547261 3547266 TTAAGGCACAAAAAA CCTGC ACTCG GCAGG TTTTCTTTTATCAAG TERM 3498 3547266 - 3547280 + T 91 -7.1 -5.18371 | opp_overlap 3547266, overlap 3547261 TTAAGGCACAAAAAA CCTGC ACTCG GCAGG TTTTCTTTTATCAAG Shew_2988 3548030 - 3547305 - | putative signal transduction protein Shew_2989 3548883 - 3548272 - | GDSL family lipase TERM 3499 3548957 - 3548938 - R 100 -12.2 -5.4505 | opp_overlap 3548938 GCGGGCAATAAAAAA GCCAGTCA GATC TGACTGGC TTTTAAGGCTAAAGC TERM 3500 3548938 - 3548957 + r 93 -12.2 -4.11216 | opp_overlap 3548938 GCGGGCAATAAAAAA GCCAGTCA GATC TGACTGGC TTTTAAGGCTAAAGC Shew_2990 3550947 - 3548977 - | TonB-dependent receptor TERM 3501 3549437 - 3549473 + g 75 -12.9 -3.05384 | opp_overlap 3549449 3549452 TCGGCGTTCACGTTG GCGCCGGGAAAACTACC ACC GGCAGGTGTCTCGGCGC TTGGATCGAAGACGA TERM 3502 3551470 - 3551441 - R 91 -11.5 -3.87075 | opp_overlap 3551448, overlap 3551448 ATTACTCCCTAGAAA CAACAAAGGAGGC CTAA GCCTCCTTCATCG CAGATAGGGGAAAGT TERM 3503 3551463 - 3551448 - R 91 -10.4 -4.63048 | opp_overlap 3551448, overlap 3551441 CCTAGAAACAACAAA GGAGGC CTAA GCCTCC TTCATCGCAGATAGG TERM 3504 3551448 - 3551463 + r 74 -10.4 -3.14931 | opp_overlap 3551448 3551441 CCTAGAAACAACAAA GGAGGC CTAA GCCTCC TTCATCGCAGATAGG Shew_2991 3551835 - 3551485 - | hypothetical protein Shew_2992 3553278 - 3551977 - | amidohydrolase Shew_2993 3554120 - 3553467 - | hypothetical protein TERM 3505 3554505 - 3554492 - g 79 -2.3 -5.17353 | ACATGCACGAAAAAA CCGTG AAGA CACTG CTCAACCGCCTGGTG Shew_2994 3554374 - 3554748 + | CopY family transcriptional regulator Shew_2995 3554748 - 3556001 + | TonB family protein Shew_2996 3556266 - 3557951 + | hypothetical protein Shew_2997 3557941 - 3558597 + | acetyltransferase-like protein Shew_2998 3558692 - 3559504 + | uroporphyrin-III C/tetrapyrrole methyltransferase Shew_2999 3559546 - 3559812 + | hypothetical protein TERM 3506 3560250 - 3560264 + G 74 -2.8 -5.00616 | CGGTTCAGAGCGGAC TGGC CATCGCC GCCA TTTTTTACAACCAGA TERM 3507 3560380 - 3560347 - g 70 -3.1 -4.68908 | overlap 3560362 3560377 GCCATCTAAAAGAAA CACCTGTCTAGCCAA TGGC TTAGCCATAGAGGCG CAGCTTGGCCTCAAT TERM 3508 3560678 - 3560664 - g 81 -2.8 -5.252 | TATTGGCAGAAAAAA TTGTCA ACC TGGCAA AAGGCTTAGGCAATA Shew_3000 3559832 - 3561589 + | diguanylate cyclase Shew_3001 3561763 - 3563940 + | extracellular solute-binding protein Shew_3002 3564755 - 3563943 - | hypothetical protein TERM 3509 3564393 - 3564414 + g 82 -5.7 -5.00884 | opp_overlap 3564387 3564388, overlap 3564388 3564402 3564406 GTGCCAGAACTCGTG TGCCAGGGC GCCG GCACCGGCA TTTTTTGCCAGGGCT TERM 3510 3564886 - 3564901 + r 81 -11.8 -3.06492 | opp_overlap 3564886 TCGGCACACAAAAAA GCCGCC CTAG GGCGGC TCTTGGCATCGATGC TERM 3511 3564901 - 3564886 - R 100 -11.8 -5.36441 | opp_overlap 3564886 TCGGCACACAAAAAA GCCGCC CTAG GGCGGC TCTTGGCATCGATGC fadE 3567184 - 3564950 - | acyl-CoA dehydrogenase TERM 3512 3566064 - 3566086 + g 80 -11.2 -3.76568 | GCGGTCACCACTGAT GGCTTGAGCC CCA GGCCCAGGCC TTCTGTTGTCAGTAC TERM 3513 3567989 - 3568004 + G 71 -9 -3.75629 | TGTGGCACCGATCCC CGCCTT CAAC AAGGCG TTTAACTTCAAGATC Shew_3004 3567633 - 3568376 + | hypothetical protein TERM 3514 3568902 - 3568882 - g 72 -6.1 -4.46514 | overlap 3568885 ATCCACCTAAAGAAA GAGGAAGTC GGC GACCTCTTC CACGACAAGTTAGGC Shew_3005 3568387 - 3569775 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shew_3006 3569777 - 3570346 + | hypothetical protein TERM 3515 3570414 - 3570436 + T 100 -11.3 -5.81412 | GCCTCAAACTGCCTG GCCACCACG ATCAC TGTGGTGGC TTTTTTTTGCCTGAA Shew_3007 3571525 - 3570632 - | LysR family transcriptional regulator TERM 3516 3571591 - 3571575 - H 83 -7.2 -4.84492 | GGAATTATAACAAAA CCGCGC ACATA GCGCAG TAGAAAAGCCAGAGG Shew_3008 3571739 - 3572017 + | PpiC-type peptidyl-prolyl cis-trans isomerase Shew_3009 3573467 - 3572454 - | transposase IS116/IS110/IS902 family protein TERM 3517 3573913 - 3573930 + G 74 -11.3 -3.28912 | overlap 3573908 TGGTCTTGATGGCTT CGTCAGC CTGT GCTGACG TTGGTGTGCGTCTCG Shew_3010 3573906 - 3574649 + | hypothetical protein Shew_3011 3574936 - 3576291 + | magnesium transporter Shew_3012 3577191 - 3576298 - | MscS mechanosensitive ion channel Shew_3013 3577976 - 3579472 + | sodium/proline symporter TERM 3518 3579609 - 3579642 + G 78 -12.3 -3.48276 | TCGCGAACTGCCGCG CCCAAGGCGTCCAGG TCGT CCTGGTCTCCTCGGG TTCTGTGGCCGCCGG TERM 3519 3579942 - 3579977 + G 74 -13.2 -2.79133 | opp_overlap 3579932 ACAACCTGTCGGCCA TGGTCGCGGCGGCGGC CGAT GCCGACGCCCTGATCA TCTGCTCCGACGTTA Shew_3014 3579485 - 3580585 + | gamma-glutamyl kinase Shew_3015 3580588 - 3581835 + | gamma-glutamyl phosphate reductase Shew_3016 3581922 - 3582716 + | pyrroline-5-carboxylate reductase TERM 3520 3582706 - 3582724 + T 70 -5.8 -4.3467 | overlap 3582707 GGGCCAAGGAGCTGG CGCTCGGC TAA GCCGCGCC TTTTACTGTACCGCT TERM 3521 3582707 - 3582723 + T 70 -9.3 -3.2032 | overlap 3582706 GGCCAAGGAGCTGGC GCTCGGC TAA GCCGCGC CTTTTACTGTACCGC TERM 3522 3582777 - 3582743 - T 100 -15.1 -3.57462 | gap 1, opp_overlap 3582748, overlap 3582748 TACTGTACCGCTAAA GCGAAGAGGCGCGCTC ATTT GAGCGCGCCTCTT-GT TTAATCGCCTTGAAG TERM 3523 3582748 - 3582773 + T 100 -20.5 -4.01158 | opp_overlap 3582743 3582748 TACCGCTAAAGCGAA GAGGCGCGCTC ATTT GAGCGCGCCTC TTGTTTAATCGCCTT TERM 3524 3582773 - 3582748 - T 100 -20.5 -3.28001 | opp_overlap 3582748, overlap 3582743 TACCGCTAAAGCGAA GAGGCGCGCTC ATTT GAGCGCGCCTC TTGTTTAATCGCCTT Shew_3017 3584091 - 3582796 - | glycerophosphoryl diester phosphodiesterase Shew_3018 3584949 - 3584161 - | alpha/beta hydrolase fold Shew_3019 3585968 - 3584946 - | zinc carboxypeptidase-related protein TERM 3525 3586102 - 3586145 + H 80 -6.2 -4.87133 | overlap 3586111 3586116 3586125 AACCTTAATTTAAGC GCTTTTATTTAAGAGCTTTT ATTT AAGAGCTTTTATTTAAGAGC TTTTATTTAAGAGCT Shew_3020 3586280 - 3586807 + | hypothetical protein TERM 3526 3586846 - 3586827 - T 100 -9.2 -5.24129 | opp_overlap 3586827 TTTGGGCATAAAAAA GCGCAGCC CTGA GGTTGCGC TTTTCATCAAACGGA TERM 3527 3586827 - 3586846 + T 93 -11.4 -4.25104 | opp_overlap 3586827 TTTGGGCATAAAAAA GCGCAGCC CTGA GGTTGCGC TTTTCATCAAACGGA Shew_3021 3588537 - 3586876 - | endonuclease I Shew_3022 3589474 - 3588794 - | hypothetical protein TERM 3528 3589802 - 3589818 + G 71 -12.3 -2.84961 | overlap 3589804 TTGATCGGCCATACC CTGCTGC TCA GCAGCAG CTTCTTCCTGGTGCT TERM 3529 3589804 - 3589819 + G 71 -9 -3.7614 | overlap 3589802 GATCGGCCATACCCT GCTGCT CAGC AGCAGC TTCTTCCTGGTGCTT Shew_3023 3589718 - 3590806 + | diguanylate cyclase TERM 3530 3590822 - 3590835 + F 77 -9.5 -3.65529 | opp_overlap 3590821 3590822 ACATCAGCAATTAAG GCCGC TACT GCGGC TTTAGCTCAGGCTGT Shew_3024 3590943 - 3592613 + | amidohydrolase 3 TERM 3531 3592645 - 3592664 + T 87 -6.3 -5.31275 | opp_overlap 3592627 3592646, overlap 3592646 ATCAGCCAAGAAAAA ACCCGGC TTGATT GCCGGGC TTTTTTATCCTCGCG TERM 3532 3592646 - 3592663 + T 79 -9.8 -3.78042 | opp_overlap 3592627 3592646, overlap 3592645 TCAGCCAAGAAAAAA CCCGGC TTGATT GCCGGG CTTTTTTATCCTCGC TERM 3533 3592663 - 3592646 - T 100 -9.8 -5.4833 | opp_overlap 3592646 3592645, overlap 3592627 TCAGCCAAGAAAAAA CCCGGC TTGATT GCCGGG CTTTTTTATCCTCGC Shew_3025 3594180 - 3592669 - | hypothetical protein Shew_3026 3595832 - 3594180 - | hypothetical protein TERM 3534 3594900 - 3594948 + g 71 -11.7 -3.08996 | opp_overlap 3594912 ACCGACCGCGCCGGC CTTGGCCGATAACTCCTTCATGC CAC GCTTGAGGGCGTCATCGGTAAAG TCTTCCCTGAGCATG TERM 3535 3595897 - 3595863 - H 79 -4.8 -5.03747 | AAATGCCGGAAAAAA GGTGGCTAGGTCGAAC TCT GCCCGACCAAACGCCC GCTTGATTGGCACCC TERM 3536 3596327 - 3596317 - g 73 -8.2 -4.04206 | TGAGCCTGAGACAAA GGGC ACT GCCC CTAATCGAGTTATTC Shew_3027 3596082 - 3596381 + | hypothetical protein Shew_3028 3597044 - 3598489 + | phospholipase D/transphosphatidylase TERM 3537 3598533 - 3598510 - T 93 -15.2 -3.06796 | opp_overlap 3598510 CGCTAGGTGAGTTAA GGCGCGGCCC GCTT GGGTCGCGCC TTTTCGAAATAGCCC TERM 3538 3598510 - 3598533 + T 100 -17.4 -4.11216 | opp_overlap 3598510 CGCTAGGTGAGTTAA GGCGCGGCCC GCTT GGGTCGCGCC TTTTCGAAATAGCCC Shew_3029 3599025 - 3598555 - | hypothetical protein TERM 3539 3599224 - 3599202 - R 100 -6.9 -5.64421 | opp_overlap 3599197 3599195 3599202, overlap 3599195 AGCCTAAATAAAAAA GCCCAGAGC GTTAG GCCTTGGGC TTTTATTATCTTTAC TERM 3540 3599202 - 3599224 + r 82 -6.9 -4.95302 | opp_overlap 3599202 3599195, overlap 3599197 3599195 AGCCTAAATAAAAAA GCCCAGAGC GTTAG GCCTTGGGC TTTTATTATCTTTAC Shew_3030 3599520 - 3599254 - | hypothetical protein Shew_3031 3601114 - 3599732 - | phosphoesterase, PA-phosphatase related TERM 3541 3600310 - 3600287 - G 70 -5.2 -4.48903 | opp_overlap 3600305, overlap 3600289 CAAAAGATAGGAAAA CGGCTGATGA TCGT CCACCAGCTG ACTATCTGGCAGCAG Shew_3032 3601300 - 3601785 + | hypothetical protein TERM 3542 3601880 - 3601849 - T 82 -12.5 -2.87822 | opp_overlap 3601856, overlap 3601856 ACCAAACAGCAAGCA CAAAAAAGCGAGC ACCAAG GCTCGCTTTTTTA ACTCGTTATCTGTAA TERM 3543 3601873 - 3601856 - T 100 -8.4 -5.38249 | opp_overlap 3601856, overlap 3601849 AGCAAGCACAAAAAA GCGAGC ACCAAG GCTCGC TTTTTTAACTCGTTA TERM 3544 3601856 - 3601873 + T 91 -8.4 -5.12617 | opp_overlap 3601856 3601849 AGCAAGCACAAAAAA GCGAGC ACCAAG GCTCGC TTTTTTAACTCGTTA Shew_3033 3604112 - 3601926 - | hypothetical protein TERM 3545 3603188 - 3603174 - G 70 -10 -3.38046 | opp_overlap 3603185, overlap 3603172 GTTCGATGGGAAATA GACGGT CTC ACCGTC CGAGCGGCGCTTGTA TERM 3546 3604244 - 3604232 - R 78 -6.2 -4.7078 | TTAATTACCGAAAAA GGCC AAATG GGCC GAATTAACCACCGGG TERM 3547 3604248 - 3604292 + r 100 -17.1 -3.55761 | opp_overlap 3604252 3604271 GCCAAATGGGCCGAA TTAACCACCGGGGCGACGAAG AAG CAGCGCCGCGCCGGTGGTTAA TTTAGAAAATAGATA TERM 3548 3604288 - 3604252 - R 100 -15.7 -3.34192 | opp_overlap 3604248, overlap 3604271 AATGGGCCGAATTAA CCACCGGGGCGACGAAG AAG CAGCGCCGCGCCGGTGG TTAATTTAGAAAATA Shew_3034 3605905 - 3604337 - | diguanylate cyclase TERM 3549 3604576 - 3604556 - G 74 -11.9 -3.16564 | overlap 3604568 3604572 GTCGCAGTCCACGAA GACGATGAG AAA CTCATCGCC GCCGATGCGGGCAGC Shew_3035 3606375 - 3606127 - | hypothetical protein TERM 3550 3606249 - 3606263 + g 72 -10 -3.67141 | TAATGCCGGTCACCC CCATGG CCT CCATGG TTTCACTAAAGTTGT TERM 3551 3606314 - 3606300 - G 74 -7.8 -4.26344 | AGATCCCCAGCAAAA TCAGGC AAA GCCCGA TGACGATACAGGTCT Shew_3036 3607366 - 3606539 - | hypothetical protein TERM 3552 3607014 - 3607031 + g 70 -2.7 -4.74103 | gap 1, overlap 3607015 TCGCTGACATGACCA TTGTGCTG AAA CAGC-CAG TTTTTAAATTGAAAC TERM 3553 3607345 - 3607333 - G 84 -3.3 -5.47821 | AGGTATCCAAAAAAA TGGGG CGC CCCGA ATAGGCTAGCCATCG Shew_3037 3608304 - 3607351 - | alpha-L-glutamate ligase Shew_3038 3608511 - 3610283 + | asparagine synthase (glutamine-hydrolyzing) Shew_3039 3610882 - 3610313 - | hypothetical protein Shew_3040 3611450 - 3613165 + | hypothetical protein TERM 3554 3614061 - 3614091 + G 91 -11 -4.371 | TTCACCCTGATGGGC GGCGCCTGGCGC AGACTGA GCGCCTAGCGCC TTTTAGTCTGATCCA Shew_3041 3613158 - 3614087 + | hypothetical protein TERM 3555 3614113 - 3614144 + T 100 -13.9 -3.97368 | gap 1, opp_overlap 3614116, overlap 3614115 3614116 TCTGATCCATAATCA CAA-GGGGATAGCC AAATA GGCTATCCCCCTTG TTTCTAAATTAAAAA TERM 3556 3614115 - 3614141 + T 100 -12.3 -4.11304 | opp_overlap 3614116, overlap 3614113 3614116 TGATCCATAATCACA AGGGGATAGCC AAATA GGCTATCCCCC TTGTTTCTAAATTAA TERM 3557 3614140 - 3614116 - T 100 -15.8 -3.57039 | opp_overlap 3614115 3614113 3614116 GATCCATAATCACAA GGGGATAGCC AAATA GGCTATCCCC CTTGTTTCTAAATTA TERM 3558 3614116 - 3614140 + T 100 -15.8 -3.06059 | opp_overlap 3614116, overlap 3614115 3614113 GATCCATAATCACAA GGGGATAGCC AAATA GGCTATCCCC CTTGTTTCTAAATTA Shew_3042 3614552 - 3614166 - | hypothetical protein Shew_3043 3614743 - 3614991 + | hypothetical protein TERM 3559 3615025 - 3615042 + F 90 -9.1 -4.7497 | opp_overlap 3615025 AGACACGACACTAAA GGGGAGC CTAG GCTTCCC TTTTTCATGCCTGCA TERM 3560 3617318 - 3617278 - g 91 -13.2 -4.07885 | GACCCTGCTGCAAAA CGGCCAGCAGACACTGGA AAGCA CCCAGAGCCTGTCGGCCG CCAATCAACAGCTAA Shew_3044 3615299 - 3617365 + | methyl-accepting chemotaxis sensory transducer TERM 3561 3617369 - 3617406 + F 88 -12 -3.55801 | opp_overlap 3617395, overlap 3617357 3617370 AAGCTAGCCTAGGCC AGTTTCGGCGCCTCTG CTCTGA TAGAGGCGCCGACACC TTTAGCCCGCTTAGT TERM 3562 3617370 - 3617405 + F 93 -15.5 -2.73159 | opp_overlap 3617395, overlap 3617369 AGCTAGCCTAGGCCA GTTTCGGCGCCTCTG CTCTGA TAGAGGCGCCGACAC CTTTAGCCCGCTTAG Shew_3045 3617527 - 3618633 + | sugar-binding protein, putative TERM 3563 3618638 - 3618618 - f 72 -9.7 -3.16191 | overlap 3618601 3618600 CGAGACCTGCACCAA GAGCGTCAG CGA CTGAGGCTC AGGTTCAGGCTCAGG Shew_3046 3618821 - 3619141 + | carboxymuconolactone decarboxylase Shew_3047 3619428 - 3620495 + | putative signal peptide protein Shew_3048 3620607 - 3621653 + | alcohol dehydrogenase TERM 3564 3621753 - 3621738 - T 87 -8.2 -5.00138 | opp_overlap 3621738, overlap 3621732 GATCCAAACTAAAAA GGCGCC CATC AGCGCC TTTTTTATCACTTGC TERM 3565 3621738 - 3621753 + T 91 -7.5 -5.31456 | opp_overlap 3621738 3621732 GATCCAAACTAAAAA GGCGC CCATCA GCGCC TTTTTTATCACTTGC Shew_3049 3623010 - 3621793 - | major facilitator transporter TERM 3566 3621873 - 3621857 - G 71 -11.5 -3.09557 | AATGATGTCAACATA GCGGCGA TGG CCGCCGC CACTCCCAGAACCAC TERM 3567 3622977 - 3622967 - G 85 -8.2 -4.73094 | AACACCAAGATAAAA GCCG TTG CGGC AATCACAAATGCACT Shew_3050 3623420 - 3623064 - | hypothetical protein Shew_3051 3624007 - 3623519 - | cupin 2 domain-containing protein TERM 3568 3624974 - 3624954 - g 80 -5.4 -4.87626 | CTGCAATATCAAAAA CGCCTC AGGCTGTTA GAGGCG CGCCGCCTCATGCTG Shew_3052 3624222 - 3625118 + | AraC family transcriptional regulator Shew_3053 3626402 - 3625140 - | Serine-type D-Ala-D-Ala carboxypeptidase Shew_3054 3626609 - 3627187 + | hypothetical protein TERM 3569 3627217 - 3627228 + F 71 -4.4 -4.72272 | opp_overlap 3627208 GGAAAATAGCCAATG CCAT CCCC ATGG TTTTTAATGAGCCAG Shew_3055 3627443 - 3627892 + | CMP/dCMP deaminase, zinc-binding Shew_3056 3628033 - 3628605 + | hypothetical protein Shew_3057 3628635 - 3628967 + | hypothetical protein Shew_3058 3629157 - 3630353 + | beta-lactamase Shew_3059 3630911 - 3630516 - | hypothetical protein Shew_3060 3631146 - 3633872 + | hypothetical protein Shew_3061 3634107 - 3634916 + | hypothetical protein TERM 3570 3634992 - 3634974 - T 100 -10.3 -5.82172 | opp_overlap 3634974 ACGAATATAAAAAAA GCGAACC ACGTG GGTTCGC TTTTTTATTTTGGTC TERM 3571 3634974 - 3634992 + T 100 -10.3 -5.83211 | opp_overlap 3634974 ACGAATATAAAAAAA GCGAACC ACGTG GGTTCGC TTTTTTATTTTGGTC TERM 3572 3635115 - 3635059 - T 100 -14.6 -3.57171 | gap 1, overlap 3635052 3635060 AGATAAGACAAGGAA GCCTGCTGTTTTCGCCGCGCAGTTGAC TCTA GTCAA-TGAGCAGCGAAAACAACGGGA TGACGCCGTGCTATA TERM 3573 3635114 - 3635060 - T 100 -18.1 -2.73218 | gap 1, overlap 3635052 3635059 GATAAGACAAGGAAG CCTGCTGTTTTCGCCGCGCAGTTGAC TCTA GTCAA-TGAGCAGCGAAAACAACGGG ATGACGCCGTGCTAT TERM 3574 3635177 - 3635147 - T 79 -11.3 -3.10908 | opp_overlap 3635153, overlap 3635153 AAACTGATTAGCCAA CAAAAAGCGAACC ACAAG GGTTCGCTTTTTT ATCAGTTAGTCGATC TERM 3575 3635153 - 3635171 + T 100 -10.3 -5.31456 | opp_overlap 3635147 3635153 ATTAGCCAACAAAAA GCGAACC ACAAG GGTTCGC TTTTTTATCAGTTAG TERM 3576 3635171 - 3635153 - T 93 -10.3 -5.11063 | opp_overlap 3635153, overlap 3635147 ATTAGCCAACAAAAA GCGAACC ACAAG GGTTCGC TTTTTTATCAGTTAG TERM 3577 3635347 - 3635317 - T 79 -11.3 -3.10908 | opp_overlap 3635323, overlap 3635323 AAACTGATTAGCCAA CAAAAAGCGAACC ACAAG GGTTCGCTTTTTT ATCAGTTAGCTAATC TERM 3578 3635341 - 3635323 - T 93 -10.3 -5.11063 | opp_overlap 3635323, overlap 3635317 ATTAGCCAACAAAAA GCGAACC ACAAG GGTTCGC TTTTTTATCAGTTAG TERM 3579 3635323 - 3635341 + T 100 -10.3 -5.31456 | opp_overlap 3635323 3635317 ATTAGCCAACAAAAA GCGAACC ACAAG GGTTCGC TTTTTTATCAGTTAG Shew_3062 3638373 - 3635485 - | glycine dehydrogenase TERM 3580 3636093 - 3636124 + g 71 -8 -3.8969 | gap 1 TAGGCAGGATGCTGG CGCTGCCGTAT-GGC GCT GCCGATACCGCACCG TTGTTGTCTGACTCA TERM 3581 3638196 - 3638164 - G 70 -11.9 -2.52896 | overlap 3638169 GTACTTGCGAATTGA GGCAAGGCCTTCGGC TTC GCCACAGGCGCTGCC AACGGCAAGATCGCG TERM 3582 3638528 - 3638496 - R 100 -16.4 -3.44146 | opp_overlap 3638500, overlap 3638500 CGGGCTTATAACGAA CGAAGCCCCATCTC TTTGC GATATGGGGCTTCG TAGGCATCGACAATT TERM 3583 3638500 - 3638524 + r 74 -10 -3.15544 | opp_overlap 3638496 3638500 CTTATAACGAACGAA GCCCCATCTC TTTGC GATATGGGGC TTCGTAGGCATCGAC TERM 3584 3638524 - 3638500 - R 77 -10 -3.48064 | opp_overlap 3638500, overlap 3638496 CTTATAACGAACGAA GCCCCATCTC TTTGC GATATGGGGC TTCGTAGGCATCGAC Shew_3063 3638931 - 3638542 - | glycine cleavage system protein H gcvT 3640219 - 3639125 - | glycine cleavage system aminomethyltransferase T Shew_3065 3641904 - 3640696 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase TERM 3585 3640796 - 3640806 + g 75 -2.4 -5.01732 | AGATTGAGACCCAGA TCCC GCA GGGC TTTTTTCACCGGATT TERM 3586 3641420 - 3641402 - G 71 -11 -3.18264 | opp_overlap 3641408 3641408 TCGCGCACCCAGGAA TTGGCACC ATC GGCGCCAA TCACCAGTGCCGCCG Shew_3066 3643157 - 3641916 - | 2-polyprenyl-6-methoxyphenol 4-hydroxylase Shew_3067 3643790 - 3643218 - | yecA family protein Shew_3068 3644074 - 3644382 + | hypothetical protein TERM 3587 3644654 - 3644680 + F 100 -9.5 -5.39721 | opp_overlap 3644654 AATTCAAATTAGAGA GGCTGAAAGGT ATAAC ACTTTTCGGCC TTTTTTATATCCTCA TERM 3588 3644912 - 3644887 - f 70 -2.7 -4.93365 | gap 1, opp_overlap 3644893, overlap 3644890 3644893 TTCTACAATCAAAAA TAATAACGCC GTTATCG GGCGTT-TTA ACAAGCTAGCATGAT Shew_3069 3644976 - 3645587 + | 5-formyltetrahydrofolate cyclo-ligase Shew_3070 3646467 - 3645607 - | extracellular solute-binding protein Shew_3071 3646825 - 3647334 + | lipoprotein Shew_3072 3647943 - 3647350 - | cold-shock protein, DNA-binding Shew_3073 3648794 - 3648126 - | uracil-DNA glycosylase Shew_3074 3648928 - 3649464 + | pilin, putative Shew_3075 3649584 - 3649901 + | hypothetical protein TERM 3589 3649962 - 3649929 - T 100 -16.9 -4.56358 | opp_overlap 3649932, overlap 3649932 CATAGCCAGATAAAA CAATGCGGCTAAGGA ATAT TCCTTAGCCGCATTT TTATGACTTCTTCAA TERM 3590 3649959 - 3649932 - T 100 -18.6 -4.38744 | opp_overlap 3649932, overlap 3649929 AGCCAGATAAAACAA TGCGGCTAAGGA ATAT TCCTTAGCCGCA TTTTTATGACTTCTT TERM 3591 3649932 - 3649959 + T 100 -18.6 -4.94222 | opp_overlap 3649932 3649929 AGCCAGATAAAACAA TGCGGCTAAGGA ATAT TCCTTAGCCGCA TTTTTATGACTTCTT Shew_3076 3650624 - 3650010 - | lysine exporter protein LysE/YggA Shew_3077 3652247 - 3650646 - | peptidase S10, serine carboxypeptidase TERM 3592 3651387 - 3651375 - G 70 -10.5 -3.32844 | CCTGTCATGGTAGAA GGCGG TGG CCGCC ATGGTCGGCAGGAAG Shew_3078 3653940 - 3652393 - | Ppx/GppA phosphatase TERM 3593 3652863 - 3652874 + g 71 -7.2 -4.08216 | opp_overlap 3652863 CCACCGACTCGAACA GCGC CATG GCGC TTTTACACACCCTGG Shew_3079 3656132 - 3653958 - | polyphosphate kinase Shew_3080 3656458 - 3656997 + | thiol:disulfide interchange protein, putative TERM 3594 3657118 - 3657098 - T 100 -15.5 -5.81622 | opp_overlap 3657098 3657101 ACAAAAGCAAAAAAA GAAGGCTGC AAG GCAGCCTTC TTATCATTTCAATTG TERM 3595 3657098 - 3657118 + T 100 -15.5 -3.6268 | opp_overlap 3657098, overlap 3657101 ACAAAAGCAAAAAAA GAAGGCTGC AAG GCAGCCTTC TTATCATTTCAATTG TERM 3596 3657101 - 3657115 + T 91 -11.4 -3.93216 | opp_overlap 3657098, overlap 3657098 AAAGCAAAAAAAGAA GGCTGC AAG GCAGCC TTCTTATCATTTCAA Shew_3081 3659751 - 3657178 - | TonB-dependent receptor TERM 3597 3660055 - 3660037 - H 71 -4.6 -4.69464 | overlap 3660038 3660054 AAAAGATGCGAAAAA CGTTAACC GAC GATTAACA TCTACCTCTAAGGAG TERM 3598 3660803 - 3660787 - g 84 -13.7 -3.65671 | CAGAAGCAGACAGAA GCCTCCC TCA GGGAGGC ACTGAAACAGGTACA TERM 3599 3660959 - 3660943 - g 82 -8 -4.57755 | overlap 3660956 ATCCAGCAGATAAAA CTGGTG GCCAA CACCAG CAGTACCGTGCTGAT Shew_3082 3660367 - 3661815 + | sigma-54 dependent trancsriptional regulator TERM 3600 3661877 - 3661842 - f 93 -12.1 -4.05033 | GTGATCGCATACAAA TTAGCGATATATCGC CAAAGC ACGATATATCGCCAA TCACAAATAGGTCAA TERM 3601 3663010 - 3662983 - g 77 -12.2 -3.32268 | opp_overlap 3662981, overlap 3662986 GAACGAGCTGCAGAA GAAGGAAGTAAA ACGT TTTACCTCCTTC AAGTTTGTCGGTTAT Shew_3083 3661997 - 3663439 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 3602 3663447 - 3663485 + F 74 -10.9 -2.70215 | overlap 3663446 CCTTCTAAGGGTGCA AGTCTGCCTCGGTGGTG TTACT TGCCACCGGGGCCGACA CTTATATGCACGTTT Shew_3084 3663756 - 3665351 + | AMP-dependent synthetase and ligase TERM 3603 3665391 - 3665410 + T 100 -12.8 -5.4505 | opp_overlap 3665382 3665391 CGAAAGGCCTAAAAA GGGCGCCT TCTC GGGCGCCC TTTTTTATTCAACCC TERM 3604 3665410 - 3665391 - T 100 -12.1 -4.64657 | opp_overlap 3665391, overlap 3665382 CGAAAGGCCTAAAAA GGGCGCC TTCTCG GGCGCCC TTTTTTATTCAACCC Shew_3085 3666013 - 3665501 - | Lipocalin family protein Shew_3086 3666372 - 3667352 + | hypothetical protein TERM 3605 3667395 - 3667373 - T 89 -8.4 -4.68593 | opp_overlap 3667373 TTTAGGAGTTAAAAA GGGCAGATTA AGC CAGTCTGCCC TTATCTCGCTCTCTT TERM 3606 3667373 - 3667395 + T 75 -9.9 -3.54838 | opp_overlap 3667373 TTTAGGAGTTAAAAA GGGCAGATT AAGCC AGTCTGCCC TTATCTCGCTCTCTT Shew_3087 3669276 - 3667414 - | lipid ABC transporter ATPase/inner membrane protein TERM 3607 3669352 - 3669325 - R 93 -12.1 -3.9644 | opp_overlap 3669325 3669330, overlap 3669330 TGGCTAACAGAATAA CAAAACCCGCC GGGAAA AGCGGGTTTTG TTTGTTTGCGGAGAT TERM 3608 3669325 - 3669352 + r 93 -11.4 -4.41616 | opp_overlap 3669325 3669330, overlap 3669330 TGGCTAACAGAATAA CAAAACCCGC CGGGAAAA GCGGGTTTTG TTTGTTTGCGGAGAT TERM 3609 3669347 - 3669330 - R 81 -6.2 -4.99312 | opp_overlap 3669325 3669330, overlap 3669325 AACAGAATAACAAAA CCCGCC GGGAAA AGCGGG TTTTGTTTGTTTGCG TERM 3610 3669330 - 3669347 + r 83 -5.5 -5.18866 | opp_overlap 3669330 3669325, overlap 3669325 AACAGAATAACAAAA CCCGC CGGGAAAA GCGGG TTTTGTTTGTTTGCG Shew_3088 3670696 - 3669386 - | short chain fatty acid transporter TERM 3611 3670358 - 3670333 - G 70 -10.3 -3.34398 | overlap 3670300 3670331 GCGCCTTGGCAAACA GGGCGCCGACC ACCA GGCCGAAGCCC CAGTTGATCCAGCTG Shew_3089 3670884 - 3671207 + | hypothetical protein Shew_3090 3671585 - 3671271 - | hypothetical protein Shew_3091 3671697 - 3672320 + | membrane-flanked domain-containing protein TERM 3612 3673440 - 3673471 + G 74 -11.5 -3.29511 | GGCCGATTCGATAGC CTGGCGGCCAAGG CCAACA CCCTGCCCGCCAG TTATCAGGGGATAAA Shew_3092 3672324 - 3673892 + | membrane-flanked domain-containing protein Shew_3093 3673945 - 3674499 + | hypothetical protein Shew_3094 3674543 - 3675304 + | hypothetical protein Shew_3095 3675723 - 3675334 - | hypothetical protein TERM 3613 3675674 - 3675700 + g 70 -10.8 -3.35775 | opp_overlap 3675675, overlap 3675672 3675675 CTCCCCCACAAACAA AGGCCTATGGCG AAA CACCATAGGCCC TGTTTCAAAAGTGAT TERM 3614 3675675 - 3675699 + g 78 -14.3 -2.61144 | opp_overlap 3675675, overlap 3675674 3675672 TCCCCCACAAACAAA GGCCTATGGCG AAA CACCATAGGCC CTGTTTCAAAAGTGA TERM 3615 3675699 - 3675675 - G 100 -16.5 -4.55295 | opp_overlap 3675675 3675674 3675672 TCCCCCACAAACAAA GGCCTATGGCG AAA CACCATAGGCC CTGTTTCAAAAGTGA Shew_3096 3676711 - 3675728 - | metalloprotease MEP1-like protein TERM 3616 3676195 - 3676232 + g 81 -4.7 -5.0432 | gap 1, overlap 3676197 GTTTCATCGCACGCT CGGCG-CTGGTGCCCGGC CCC GCAGTGTACCAGGCATCG TTTTCTGTTTTTGTT TERM 3617 3676800 - 3676788 - H 80 -10.5 -3.75332 | ACTTGCTAATGCAAA GGCCG AAG CGGCC GCCAGGCATGAAAAA Shew_3097 3676984 - 3679155 + | TonB-dependent siderophore receptor TERM 3618 3679176 - 3679224 + T 100 -17.8 -2.7487 | gap 1, opp_overlap 3679187, overlap 3679187 AGTTAAAAGCTAACA GGC-ACTAAAAAGGGCATATCGC CGAC GCGATATGCCCTTTTTATTTGTC TCAATTATTTGTCTC TERM 3619 3679212 - 3679187 - T 100 -17.7 -4.76644 | opp_overlap 3679187 3679176 AACAGGCACTAAAAA GGGCATATCGC CGAC GCGATATGCCC TTTTTATTTGTCTCA TERM 3620 3679187 - 3679212 + T 100 -17.7 -5.42975 | opp_overlap 3679187, overlap 3679176 AACAGGCACTAAAAA GGGCATATCGC CGAC GCGATATGCCC TTTTTATTTGTCTCA Shew_3098 3680341 - 3679301 - | NADH:flavin oxidoreductase/NADH oxidase TERM 3621 3680684 - 3680671 - g 73 -5.2 -4.57353 | opp_overlap 3680671 GGGCAGGACAGAAAA GCCG AGCTAA CGGC CTGTTTCGGCTCGGC Shew_3099 3680473 - 3681051 + | TetR family transcriptional regulator Shew_3100 3681496 - 3681053 - | UspA domain-containing protein Shew_3101 3682118 - 3681687 - | UspA domain-containing protein Shew_3102 3682790 - 3682413 - | hypothetical protein TERM 3622 3682929 - 3682944 + H 93 -9 -5.09426 | opp_overlap 3682929 CCCCCTAACATTAGA CCGACT AATC AGTCGG TTTTTTAAGGTTGGC TERM 3623 3683577 - 3683631 + G 80 -14.3 -2.97021 | gap 1, overlap 3683591 AGACCCAGGTGGCTG TCGTCGAAGGCGAG-GCCGAGGTCGC CGCC GCTTTCTCGGCGCTCCCCTTCGACCA TCTGCTGTTTACCGG TERM 3624 3684449 - 3684466 + G 73 -5.5 -4.62069 | overlap 3684443 GGCAATGCCATTCAG CAGCTGC TGAT GAAGCTG TTTTTACGCTAACGG Shew_3103 3683054 - 3684478 + | aldehyde dehydrogenase TERM 3625 3684651 - 3684668 + G 83 -11.3 -3.87815 | opp_overlap 3684650 TTCCCCTCCAAGGAG CAGCTGC TCGA GCAGCTG TTTCTAGGCGTAAAA Shew_3104 3684492 - 3685076 + | TetR family transcriptional regulator Shew_3105 3685959 - 3685078 - | LysR family transcriptional regulator Shew_3106 3686070 - 3686741 + | ThiJ/PfpI domain-containing protein TERM 3626 3687326 - 3687343 + G 70 -5.5 -4.36914 | opp_overlap 3687326 AGCATAAATCAAGAT CTCAACC AGGT GGATGAG TTTTATGAGCGCGGC Shew_3107 3686903 - 3688060 + | peptidase M19, renal dipeptidase Shew_3108 3689875 - 3689318 - | hypothetical protein TERM 3627 3689493 - 3689503 + g 72 -4 -4.71791 | opp_overlap 3689479 3689493, overlap 3689479 AGTTTCTGAATCATA GAAA CTG TTTC TTTATTTATTAATAT TERM 3628 3689559 - 3689571 + g 74 -2.7 -4.89567 | TATTTTTTACTACGA CTTTT ATT AAGAG TTTTATGTTTTAGCC TERM 3629 3690231 - 3690221 - H 71 -8.2 -3.76224 | GTTTCAGGGATGAAA CCGC AGA GCGG CCAGGGATGGCGAAC TERM 3630 3690317 - 3690301 - H 72 -9.5 -3.18264 | opp_overlap 3690300 GGCGTTAGGTAGCAA TGAAGGT TCA ACCTTCA ATTCACTCAATAAAT TERM 3631 3691180 - 3691194 + G 78 -12.8 -3.2794 | AGCGTACCCATTATT GCCGCC TTC GGCGGC TTCATCTGGATCGGC Shew_3109 3690445 - 3691314 + | hypothetical protein TERM 3632 3691471 - 3691461 - T 71 -8.2 -3.76224 | GTTTCAGGGATGAAA CCGC AGA GCGG CCAGGGATGGCGTAA Shew_3110 3691868 - 3691659 - | hypothetical protein Shew_3111 3692801 - 3691980 - | NAD-dependent epimerase/dehydratase TERM 3633 3693165 - 3693184 + r 100 -15 -3.5594 | opp_overlap 3693165, overlap 3693177 TCCCTATACAAAAAA GCCACGGC GGTG GCCGTGGC TTTCAGCGGTGGCTT TERM 3634 3693184 - 3693165 - R 100 -15 -5.36441 | opp_overlap 3693165 3693177 TCCCTATACAAAAAA GCCACGGC GGTG GCCGTGGC TTTCAGCGGTGGCTT TERM 3635 3693192 - 3693209 + r 93 -11.3 -4.1964 | overlap 3693177 GCCGTGGCTTTCAGC GGTGGCT TCCT AGCCACC TTTTGGAGTGTTAAC Shew_3112 3695050 - 3693260 - | flavocytochrome c TERM 3636 3694414 - 3694424 + g 80 -5.4 -4.92239 | overlap 3694402 3694395 ACATGATCTCTGGGT CATC TTT GATG TTTTTCGCTTTTTGC TERM 3637 3695555 - 3695534 - g 71 -7.9 -4.13767 | overlap 3695535 GCGTCCACTCGAAAA CTGCGCCGC TGGA GTGGCGCAA CAACGGTGTGGATCA Shew_3113 3695449 - 3697413 + | histidine kinase Shew_3114 3697423 - 3698811 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 3638 3698836 - 3698854 + T 100 -13.2 -5.37593 | opp_overlap 3698836 ATAGGCATAAAAAAA GCCTCTCA TCA TGAGAGGC TTTTTTCATTTAAAG TERM 3639 3698854 - 3698836 - T 100 -13.2 -5.65177 | opp_overlap 3698836 ATAGGCATAAAAAAA GCCTCTCA TCA TGAGAGGC TTTTTTCATTTAAAG Shew_3115 3700186 - 3698873 - | sodium:dicarboxylate symporter TERM 3640 3700155 - 3700171 + g 93 -5.8 -5.56673 | TTGCCTTGTTTTGTT GCGCAT CTATC GTGCGC TTTTTTCTTCTCCAT TERM 3641 3700632 - 3700594 - R 91 -6.8 -5.42975 | opp_overlap 3700594 GCAGATAAACAAAAA CCGCTAAACCAGCATTTT TAT AAGCTACTGATTTAACGG TTTTAAGTGATTTTT Shew_3116 3701943 - 3700723 - | hypothetical protein Shew_3117 3702598 - 3701945 - | hypothetical protein TERM 3642 3702044 - 3702017 - G 71 -11.4 -3.18264 | gap 1, overlap 3702018 GGTTTCATCGATGAA GC-GGATCACCTC GTA GAGGTAATCCAGC TTGCCGGTGGCGATA Shew_3118 3706270 - 3702599 - | hypothetical protein TERM 3643 3704128 - 3704141 + g 77 -8.1 -4.3129 | overlap 3704116 TCTCCATGCGCGCCT CGAGC GCCT GCTCG TTTTGCTCATCGATC TERM 3644 3705597 - 3705573 - G 85 -15.7 -3.05384 | CTCTCGCGGATCCAA GCCTCGACCCG CTG CGGGTTGAGGC GTGAGCTCGGCGGGT TERM 3645 3706426 - 3706414 - R 71 -4.8 -4.57837 | opp_overlap 3706414 3706415 3706423 3706424, overlap 3706415 ATAGTCGTTTAAAAA GCGT GCGTA ACGC CCGATTTCAGGCGGT TERM 3646 3706637 - 3706618 - R 93 -11.4 -4.41609 | opp_overlap 3706618 3706614 GAGCAGAAATAGAAA GGGCCGAC CAGC GTCGACCC TAACTTAGATTTTCA Shew_3119 3707411 - 3706698 - | hypothetical protein TERM 3647 3708567 - 3708536 - g 82 -5.8 -4.85599 | gap 1, overlap 3708539 CCCAGTTGAGAAAAA CATCCTGCCTGCCAC TTG GTGGGAAGCGGG-TG CCAACCTGAACATCA Shew_3120 3707988 - 3709160 + | phosphate-selective porin O and P TERM 3648 3709215 - 3709166 - f 78 -11 -3.17723 | gap 2, opp_overlap 3709163 CCAGTTCTAAGCCAA TAGCCCATATCGCAGTGCTCAACG CTCC CTTTGAGCACTGCC-TATGG-CTA AGGTACTTCCCGAGG Shew_3121 3709313 - 3709828 + | FMN-binding domain-containing protein TERM 3649 3709886 - 3709904 + F 87 -10.3 -4.34402 | TATATGATGGCCAGC GAGCAGG CGAGC CCTGCTC TTTTCGTATCCAACA Shew_3122 3709997 - 3710797 + | PepSY-associated TM helix domain-containing protein TERM 3650 3710898 - 3710882 - T 100 -12.3 -5.64873 | opp_overlap 3710882 CTTAACAATAAAAAA GCTCACC TAA GGTGAGC TTTTTTATTGAGGCG TERM 3651 3710882 - 3710898 + T 100 -12.3 -5.4505 | opp_overlap 3710882 CTTAACAATAAAAAA GCTCACC TAA GGTGAGC TTTTTTATTGAGGCG Shew_3123 3713299 - 3710930 - | penicillin-binding protein 1B TERM 3652 3713312 - 3713348 + r 80 -4.4 -5.20534 | gap 1, opp_overlap 3713316, overlap 3713313 3713314 CATCGTGTTTCCAGT CA-AACAGCTAAGGGGC TAGA GCCCCTTAGCTGACATC TTTTTCTTGGTTAAT TERM 3653 3713313 - 3713346 + r 84 -9.5 -4.21997 | opp_overlap 3713316, overlap 3713312 3713314 ATCGTGTTTCCAGTC AAACAGCTAAGGGGC TAGA GCCCCTTAGCTGACA TCTTTTTCTTGGTTA TERM 3654 3713314 - 3713345 + r 86 -13 -3.11572 | opp_overlap 3713316, overlap 3713313 3713312 TCGTGTTTCCAGTCA AACAGCTAAGGGGC TAGA GCCCCTTAGCTGAC ATCTTTTTCTTGGTT TERM 3655 3713343 - 3713316 - R 100 -20 -3.64703 | opp_overlap 3713314 3713313 3713312 GTGTTTCCAGTCAAA CAGCTAAGGGGC TAGA GCCCCTTAGCTG ACATCTTTTTCTTGG Shew_3124 3715858 - 3713327 - | ATP-dependent helicase HrpB TERM 3656 3714591 - 3714603 + g 72 -10.5 -3.41125 | opp_overlap 3714572 3714577 AGCCGATAGGCGGCG CGGCC ATG GGCCG TTATGCGTCTGTCGC TERM 3657 3714676 - 3714648 - G 87 -17.5 -2.78715 | AAGGCTTGCAGCAGA TCCGAGGCTACCG TCT CGTTAGCCTCGGA GGGGGGCGAGATCAA TERM 3658 3715938 - 3715910 - R 85 -10.9 -3.84451 | opp_overlap 3715923 3715924, overlap 3715912 GGCGGCAAAGCTAAA CAGACGAGTCCCC GCT GGGGGCTCGTCCC AGGTTAATATCTCTT TERM 3659 3715936 - 3715912 - R 100 -15.7 -3.50832 | opp_overlap 3715923 3715924, overlap 3715910 CGGCAAAGCTAAACA GACGAGTCCCC GCT GGGGGCTCGTC CCAGGTTAATATCTC Shew_3125 3718147 - 3715952 - | diguanylate cyclase/phosphodiesterase TERM 3660 3717683 - 3717632 - G 83 -15 -3.05463 | gap 1 ACTCTTGGCATTTAA GC-GCTGGCGCGCCGCCTCCTGCGC CAG GCCCAGCAGGCTGCCGGCCAGCAGC AGGTTAAGACGAATC TERM 3661 3718113 - 3718098 - G 85 -4.6 -5.24129 | opp_overlap 3718083, overlap 3718099 TGTTCGCATAAAAAA GCGAGC GTCT GCTCGA GCGATTGGGATCCCT Shew_3126 3718384 - 3718914 + | 2'-5' RNA ligase TERM 3662 3718943 - 3718912 - T 83 -12.4 -3.08211 | opp_overlap 3718914 3718920, overlap 3718920 ACGGCCCCAAAAGCA TAAAAAAACGCGCC AATT GGCGCGTTTTTCTC ATTCACTACAGCTTA TERM 3663 3718914 - 3718941 + T 82 -12.8 -2.75183 | opp_overlap 3718912 3718920, overlap 3718920 GGCCCCAAAAGCATA AAAAAACGCGCC AATT GGCGCGTTTTTC TCATTCACTACAGCT TERM 3664 3718935 - 3718920 - T 100 -11.8 -5.77632 | opp_overlap 3718914 3718920, overlap 3718912 AAAAGCATAAAAAAA CGCGCC AATT GGCGCG TTTTTCTCATTCACT TERM 3665 3718920 - 3718935 + T 100 -11.8 -4.98857 | opp_overlap 3718920 3718912, overlap 3718914 AAAAGCATAAAAAAA CGCGCC AATT GGCGCG TTTTTCTCATTCACT Shew_3127 3720233 - 3718956 - | aminopeptidase B TERM 3666 3721078 - 3721097 + G 77 -3.4 -5.02323 | GATGGAGATGGTCAA GCAGGGAC ACAG GGCCGTGC TTTTATTTGTGGTGC Shew_3128 3720572 - 3721276 + | sugar fermentation stimulation protein Shew_3129 3721436 - 3721879 + | TraR/DksA family transcriptional regulator TERM 3667 3721891 - 3721907 + F 100 -15.1 -5.37043 | opp_overlap 3721891 TTAAGCTGGCGAGAA GCGGGGC TTA GCCCCGC TTTTTTGTATCCAGT TERM 3668 3721907 - 3721891 - f 100 -15.1 -3.30159 | opp_overlap 3721891 TTAAGCTGGCGAGAA GCGGGGC TTA GCCCCGC TTTTTTGTATCCAGT Shew_3130 3721930 - 3722889 + | glutamate--tRNA ligase Shew_3131 3722971 - 3724413 + | poly(A) polymerase Shew_3132 3724413 - 3724901 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Shew_3133 3724997 - 3725791 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase Shew_3134 3725808 - 3726656 + | pantoate--beta-alanine ligase TERM 3669 3726732 - 3726762 + F 100 -13.3 -5.0925 | CTTTAACCTCTAATT TCGCTTCTCTGGC CCAAT GCCTGGGAAGCGA TTTTTCATTTTAGGC TERM 3670 3726964 - 3726945 - f 80 -8.6 -4.29326 | opp_overlap 3726944 GCGAAAGCCAATAAA GTGACCTG GATC CAGATCAC CTGCATTTCATTTAC Shew_3135 3727506 - 3729149 + | L-lactate permease Shew_3136 3729217 - 3732021 + | FAD linked oxidase domain-containing protein TERM 3671 3732063 - 3732091 + F 100 -12.5 -5.4251 | opp_overlap 3732062 3732061 CCACCCAAGCAAACT CCGCGGTGTGA CATCAGC TCACATCGCGG TTTTTTATCTCTGCC Shew_3137 3732390 - 3732950 + | hypothetical protein Shew_3138 3733101 - 3733517 + | hypothetical protein Shew_3139 3733514 - 3733828 + | hypothetical protein TERM 3672 3733886 - 3733869 - T 100 -12.7 -5.29782 | opp_overlap 3733869 TACAGCCATAAAAAA GCCCCAC CAAG GTGGGGC TTTTTAGTTGGGTTT TERM 3673 3733869 - 3733886 + T 100 -12.7 -4.90917 | opp_overlap 3733869 TACAGCCATAAAAAA GCCCCAC CAAG GTGGGGC TTTTTAGTTGGGTTT Shew_3140 3734706 - 3733918 - | ABC-2 type transporter Shew_3141 3735644 - 3734703 - | ABC transporter-related protein TERM 3674 3735724 - 3735706 - R 100 -8.1 -5.77571 | opp_overlap 3735706 ATGAAAAAACAAAAA CTCCCGC ACAAA GCAGGAG TTTAAAATCTTAACG Shew_3142 3736279 - 3735749 - | hypoxanthine phosphoribosyltransferase Shew_3143 3736957 - 3736298 - | aromatic acid decarboxylase TERM 3675 3736451 - 3736436 - G 77 -7.5 -4.4891 | opp_overlap 3736436 3736435 GGGATCATGATAAAA GCCGG GAGCCG CCGGC ATTATGGTGGCGCCG TERM 3676 3737009 - 3736978 - R 71 -9.5 -3.04144 | opp_overlap 3736997 3737005 TCTCTATGTTGAAGA CCCGAGTCTAACC CTTACT GGCTAGACTCAAG CCTTGATCTCTTCCA Shew_3144 3738444 - 3737005 - | UDP-N-acetylmuramate TERM 3677 3737506 - 3737518 + g 75 -9.1 -4.1585 | ACGGGCCGCGGCGAT CGCCA TGG TGGCG TTTTCCACGTTGTGC TERM 3678 3737929 - 3737917 - G 77 -10.5 -3.75024 | CTCCACCACGAAGAA GGGGG AAT CCCCC AACCGCGCCGACACA TERM 3679 3738645 - 3738661 + r 74 -9.5 -3.29649 | GGCCTGAATTACGTT TCCAAAC TTC GTTTGGA TTAATGTCGTGGGAT TERM 3680 3738781 - 3738744 - R 78 -10.6 -3.25823 | opp_overlap 3738750, overlap 3738745 TCCGTTCCACACCAA GGGCAAGAGGGGGATC TCCAGC AATCCCCCTCTTGCAT CTCCCCGTGCCGCCT TERM 3681 3738780 - 3738745 - R 87 -14.1 -2.55351 | opp_overlap 3738750, overlap 3738744 CCGTTCCACACCAAG GGCAAGAGGGGGATC TCCAGC AATCCCCCTCTTGCA TCTCCCCGTGCCGCC TERM 3682 3738750 - 3738775 + r 73 -10.5 -3.12668 | opp_overlap 3738745 3738744 CCACACCAAGGGCAA GAGGGGGAT CTCCAGCA ATCCCCCTC TTGCATCTCCCCGTG Shew_3145 3739715 - 3739119 - | hypothetical protein TERM 3683 3739790 - 3739748 - R 77 -10 -3.43564 | gap 3, opp_overlap 3739746 3739761 3739761 3739763 3739789, overlap 3739741 CAATGTAAGCTATAA CGC-CAAGCTAAGCGGCGCGC GATA GCGCGTC-CTT-GCTTGAGCG CCTTGTTAAGCGTTT TERM 3684 3739761 - 3739778 + r 70 -10.5 -2.60194 | opp_overlap 3739741 3739748, overlap 3739746 3739761 3739763 AACGCCAAGCTAAGC GGCGCGC GATA GCGCGTC CTTGCTTGAGCGCCT TERM 3685 3739763 - 3739776 + r 70 -9.5 -2.84098 | opp_overlap 3739741 3739748, overlap 3739761 3739761 3739746 CGCCAAGCTAAGCGG CGCGC GATA GCGCG TCCTTGCTTGAGCGC TERM 3686 3740441 - 3740464 + r 77 -11.6 -2.65106 | opp_overlap 3740442, overlap 3740440 3740435 3740435 3740434 TATAACGCTTCAAGA AGGGGCGCCG GTTA CGGCGTCCCG CTTGCTTGACTTGTT TERM 3687 3740463 - 3740442 - R 100 -12.9 -3.63837 | opp_overlap 3740441 3740440 3740435 3740435 3740434 ATAACGCTTCAAGAA GGGGCGCCG GTTA CGGCGTCCC GCTTGCTTGACTTGT Shew_3146 3740916 - 3740452 - | hypothetical protein TERM 3688 3740651 - 3740663 + g 78 -6.3 -4.70879 | TGTTTCTTCCAGTTT TGTAC GCC GTACA TTTTTAGAGTTTCGA Shew_3147 3742889 - 3742317 - | hypothetical protein TERM 3689 3743027 - 3743038 + r 72 -7.2 -4.09511 | opp_overlap 3743027 TACCATCTGCAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 3690 3743038 - 3743027 - R 82 -7.2 -4.60487 | opp_overlap 3743027 TACCATCTGCAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 3691 3743445 - 3743492 + r 93 -9.3 -5.06816 | gap 2, opp_overlap 3743455, overlap 3743446 3743447 TAGCCATCATGGACG ATGGCTAA-GACTCGGA-GGGAC AGGA GTCCCATCCGAGTCGTTAGGCGA TTTTTATTGAAGCAT TERM 3692 3743446 - 3743491 + r 95 -12.8 -3.63367 | gap 2, opp_overlap 3743455, overlap 3743445 3743447 AGCCATCATGGACGA TGGCTAA-GACTCGGA-GGGAC AGGA GTCCCATCCGAGTCGTTAGGCG ATTTTTATTGAAGCA TERM 3693 3743447 - 3743490 + r 87 -14.1 -2.77538 | gap 2, opp_overlap 3743455, overlap 3743446 3743445 GCCATCATGGACGAT GGCTAA-GACTCGGA-GGGAC AGGA GTCCCATCCGAGTCGTTAGGC GATTTTTATTGAAGC TERM 3694 3743481 - 3743455 - R 86 -13.1 -3.04792 | gap 1, opp_overlap 3743447 3743446 3743445 GGACGATGGCTAAGA CTCGGA-GGGAC AGGA GTCCCATCCGAG TCGTTAGGCGATTTT TERM 3695 3743651 - 3743674 + r 74 -10.4 -3.14132 | gap 1 AGTCCTCCTTGCCCG CGT-GTGGGAT GGA ATCCCACGACG TTAATCCAAACGAAG Shew_3148 3744224 - 3743787 - | MarR family transcriptional regulator TERM 3696 3744284 - 3744245 - H 100 -13.8 -3.79113 | opp_overlap 3744246, overlap 3744246 3744258 ATCTCTCCAGAACAA TTTGACAGCATAATGTCA AATA TGACAATGTGCTGTCAAA TATGACAATATGCTG TERM 3697 3744303 - 3744246 - H 100 -18.1 -2.87146 | opp_overlap 3744246 3744287 3744296, overlap 3744245 3744258 3744285 3744293 TCTCTCCAGAACAAT TTGACAGCATAATGTCAAATATGACAA TGTG CTGTCAAATATGACAATATGCTGTCAA ATGTTGACAACTTGT TERM 3698 3744246 - 3744304 + H 79 -11.4 -3.05066 | gap 1, opp_overlap 3744245 3744246 3744258 3744285 3744293, overlap 3744287 3744296 TCTCTCCAGAACAAT -TTGACAGCATAATGTCAAATATGACA ATGTGC TGTCAAATATGACAATATGCTGTCAAA TGTTGACAACTTGTT TERM 3699 3744325 - 3744285 - H 88 -12.1 -3.53761 | opp_overlap 3744246 3744287 3744296, overlap 3744258 3744246 3744293 3744306 CAATGTGCTGTCAAA TATGACAATATGCTGTCAA ATG TTGACAACTTGTTGTCATA CTCTACCCCAAAAGA TERM 3700 3744287 - 3744323 + H 70 -10.3 -2.62184 | opp_overlap 3744258 3744246 3744285 3744293 3744306, overlap 3744246 3744296 ATGTGCTGTCAAATA TGACAATATGCTGTCAA ATG TTGACAACTTGTTGTCA TACTCTACCCCAAAA Shew_3149 3744379 - 3744837 + | putative lipoprotein Shew_3150 3744852 - 3745148 + | antibiotic biosynthesis monooxygenase TERM 3701 3745262 - 3745309 + F 85 -9.3 -4.41047 | gap 2, opp_overlap 3745272, overlap 3745263 3745264 3745272 TAGCCATCATGGACG ATGGCTAA-GACTCGGA-GGGAC AGGA GTCCCATCCGAGTCGTTAGGCGA TTTTCATTGAAGCAT TERM 3702 3745263 - 3745308 + F 86 -12.8 -3.24146 | gap 2, opp_overlap 3745272, overlap 3745262 3745264 3745272 AGCCATCATGGACGA TGGCTAA-GACTCGGA-GGGAC AGGA GTCCCATCCGAGTCGTTAGGCG ATTTTCATTGAAGCA TERM 3703 3745264 - 3745307 + F 87 -14.1 -2.54166 | gap 2, opp_overlap 3745272, overlap 3745263 3745262 3745272 GCCATCATGGACGAT GGCTAA-GACTCGGA-GGGAC AGGA GTCCCATCCGAGTCGTTAGGC GATTTTCATTGAAGC TERM 3704 3745272 - 3745298 + F 85 -13.1 -2.73123 | gap 1, opp_overlap 3745272, overlap 3745264 3745263 3745262 GGACGATGGCTAAGA CTCGGA-GGGAC AGGA GTCCCATCCGAG TCGTTAGGCGATTTT TERM 3705 3745298 - 3745272 - f 86 -13.1 -3.04792 | gap 1, opp_overlap 3745272 3745264 3745263 3745262 GGACGATGGCTAAGA CTCGGA-GGGAC AGGA GTCCCATCCGAG TCGTTAGGCGATTTT TERM 3706 3745466 - 3745488 + F 76 -8.4 -3.86897 | opp_overlap 3745456 AACAACCATTCCCTT GGTGTGGAAC AGA GTTCCACGAC TTTCTCGGCCGTAAG TERM 3707 3746663 - 3746683 + G 70 -9.6 -3.44527 | CCATCATCGCCCTGT GCGGCGGC TCGCT GGCGCCGC TTATGCTGCTCGATG TERM 3708 3747429 - 3747445 + G 74 -12.3 -3.16564 | CTGCGCAGCCTGTTA TCAGGCG ATA CGCCTGA TTGATGCCCTGGGGG TERM 3709 3747495 - 3747508 + G 79 -9.5 -4.1899 | GCGACTGCTGCGCCG CGCCC TGCA GGGCG TTTTGGGTCAGCTGC Shew_3151 3745672 - 3748866 + | hypothetical protein TERM 3710 3748911 - 3748942 + T 86 -13.2 -2.84878 | opp_overlap 3748918, overlap 3748918 CCAAGATTACTGGCA TAAAAAAGAGGAGC CTAG GCTCCTCTTTTTCA CTTTAGCTTCAAGCA TERM 3711 3748918 - 3748935 + T 100 -11.3 -4.81851 | opp_overlap 3748918, overlap 3748911 TACTGGCATAAAAAA GAGGAGC CTAG GCTCCTC TTTTTCACTTTAGCT TERM 3712 3748935 - 3748918 - T 100 -11.3 -5.252 | opp_overlap 3748918 3748911 TACTGGCATAAAAAA GAGGAGC CTAG GCTCCTC TTTTTCACTTTAGCT TERM 3713 3748952 - 3748982 + T 100 -13.4 -3.60431 | opp_overlap 3748958, overlap 3748955 TTTTCACTTTAGCTT CAAGCATCTTGGGT CAT ACCCGAAATGCTTG TTTGGCCATACTTTT TERM 3714 3748955 - 3748979 + T 79 -9.3 -3.9281 | opp_overlap 3748958, overlap 3748952 TCACTTTAGCTTCAA GCATCTTGGGT CAT ACCCGAAATGC TTGTTTGGCCATACT Shew_3152 3753968 - 3749031 - | peptidase S8 and S53, subtilisin, kexin, sedolisin Shew_3153 3754528 - 3755532 + | LysR family transcriptional regulator Shew_3154 3756656 - 3755682 - | LysR family transcriptional regulator Shew_3155 3757039 - 3757548 + | hypothetical protein Shew_3156 3757647 - 3758111 + | hypothetical protein Shew_3157 3758122 - 3758814 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shew_3158 3758811 - 3759752 + | polysulphide reductase, NrfD TERM 3715 3759758 - 3759742 - T 81 -12.3 -2.62735 | ATACCGGCCAGATGA CGGGGAT CTA ATCCCCG CTGGCCATTCAATCA Shew_3159 3760828 - 3759767 - | uncharacterized FlgJ-related protein-like TERM 3716 3760164 - 3760176 + g 71 -9.1 -3.72695 | opp_overlap 3760161 3760157 ACGGTAAAGCGAGAG GTGGC CCA GCCAC TTTCCTCCGCCGCCT Shew_3160 3761384 - 3761872 + | hypothetical protein TERM 3717 3762693 - 3762672 - g 71 -12.3 -2.80935 | opp_overlap 3762676 ACTTCATCGAGCACA GCATCAGCC TGCT GGCCGATGC CACCTGGCAGTTCAT Shew_3161 3762008 - 3762955 + | hypothetical protein Shew_3162 3762993 - 3766559 + | hypothetical protein TERM 3718 3766614 - 3766584 - f 81 -11.3 -3.1372 | opp_overlap 3766590, overlap 3766590 TATCGTTCAGCAATA GAAAAAGAAGCCG CTCGT CGGCTTCTTTTTT GCTTTAGGGCTAATG TERM 3719 3766608 - 3766590 - f 93 -10.3 -5.1244 | opp_overlap 3766590, overlap 3766584 TCAGCAATAGAAAAA GAAGCCG CTCGT CGGCTTC TTTTTTGCTTTAGGG TERM 3720 3766590 - 3766608 + F 100 -10.3 -5.37593 | opp_overlap 3766590 3766584 TCAGCAATAGAAAAA GAAGCCG CTCGT CGGCTTC TTTTTTGCTTTAGGG Shew_3163 3766819 - 3767886 + | diguanylate cyclase with PAS/PAC sensor Shew_3164 3768672 - 3767947 - | ABC transporter-related protein Shew_3165 3769345 - 3768665 - | polar amino acid ABC transporter, inner membrane subunit Shew_3166 3770080 - 3769352 - | extracellular solute-binding protein TERM 3721 3770181 - 3770168 - H 75 -5.3 -4.85599 | opp_overlap 3770168 CTTATGCGATAAAAA TGACT ATTT AGTCA TTTCGTTTGCTTTTT Shew_3167 3770609 - 3770854 + | hypothetical protein TERM 3722 3771194 - 3771225 + F 100 -16.8 -5.80951 | gap 1, opp_overlap 3771184 CCAAAGGCGCTTTCG CCTGGTGATAG-GCA GGA TGCTCTATCACCAGG TTTTTTCTTTTAAGT Shew_3168 3771371 - 3772087 + | hypothetical protein TERM 3723 3772194 - 3772217 + F 100 -13.1 -4.28977 | GGCTTAGCCCTTCAG GCCCGCTGG CTGACA CCGGCGGGC TTTTACATGTGTTAT Shew_3169 3772275 - 3773273 + | WD-40 repeat-containing protein Shew_3170 3774493 - 3773303 - | sodium/hydrogen exchanger TERM 3724 3774632 - 3774615 - R 100 -8.4 -5.86332 | opp_overlap 3774615 TTAATTGAAAAAAAA GCCCGA ACTGAG TCGGGC TTACTTATCGCTATT TERM 3725 3774615 - 3774632 + r 71 -8.4 -3.4706 | opp_overlap 3774615 TTAATTGAAAAAAAA GCCCGA ACTGAG TCGGGC TTACTTATCGCTATT Shew_3171 3775407 - 3774643 - | prolipoprotein diacylglyceryl transferase TERM 3726 3775554 - 3775575 + r 93 -11.5 -4.33105 | opp_overlap 3775554 TACAGATACAAAAAA GCCCGGGAG AAAT CTCCCAGGC TTTTGGTGATGGTTC TERM 3727 3775575 - 3775554 - R 100 -13.7 -5.4492 | opp_overlap 3775554 TACAGATACAAAAAA GCCCGGGAG AAAT CTCCCAGGC TTTTGGTGATGGTTC Shew_3172 3776915 - 3775635 - | 4-aminobutyrate aminotransferase Shew_3173 3778390 - 3776933 - | succinic semialdehyde dehydrogenase Shew_3174 3778538 - 3779500 + | LysR family transcriptional regulator TERM 3728 3779526 - 3779482 - T 100 -9.4 -5.28481 | gap 1 CAGTGAATCAAAAAA GGCTGCGG-CCACACCTTAGA TCTC CCCAAGATATAGACCACAGCC AAGATGTCTTATGAC TERM 3729 3779597 - 3779581 - T 79 -11.5 -3.00128 | overlap 3779578 CATTAAATATAATCA GCGGCCA TCC CGGCCGC GCAAGCACAAACAAT Shew_3175 3780957 - 3779695 - | outer membrane porin Shew_3176 3781321 - 3782049 + | regulatory protein GntR, HTH Shew_3177 3782624 - 3782100 - | hypothetical protein TERM 3730 3784167 - 3784203 + G 79 -8.5 -4.36914 | CCATGCTGGTCGGTG GCCTGGCGGCCCTGATG CAG CAACAGGGTGGACTGGC TTTTGTGAGCAAGCA Shew_3178 3783257 - 3784588 + | Na+/H+ antiporter NhaC TERM 3731 3784760 - 3784780 + G 91 -6.9 -5.47159 | opp_overlap 3784760 TGCGTCGAAACGAAA GGAGTAC CAAAAAT GTACTCC TTTTTTATATTCAAA Shew_3179 3784744 - 3785520 + | hypothetical protein Shew_3180 3785529 - 3786245 + | pseudouridine synthase Shew_3181 3786798 - 3788465 + | fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein Shew_3182 3788532 - 3788888 + | hypothetical protein TERM 3732 3788924 - 3788942 + F 70 -6.7 -4.13767 | opp_overlap 3788924 TCTCTGTAAGCAAAA CCACCTT GCTAA GAGGTGG TTTTCCCCTCGAAAA TERM 3733 3788942 - 3788924 - f 73 -6 -4.4078 | opp_overlap 3788924 TCTCTGTAAGCAAAA CCACCT TGCTAAG AGGTGG TTTTCCCCTCGAAAA TERM 3734 3788973 - 3788959 - f 72 -5.6 -4.56597 | TTTCCCCTCGAAAAA GGCGAG CCA CTCCCC CAAACCCCATCATCT TERM 3735 3789036 - 3789054 + F 73 -6 -4.38712 | overlap 3789017 CCTTTTATCAAGACA CGCGCTTT ATC AAAGTGTG TTTTATCAAAGTGCG Shew_3183 3789252 - 3789635 + | hypothetical protein Shew_3184 3790354 - 3790872 + | hypothetical protein Shew_3185 3791417 - 3792193 + | hypothetical protein Shew_3186 3792254 - 3793255 + | AraC family transcriptional regulator TERM 3736 3793712 - 3793689 - T 100 -11.8 -5.60689 | opp_overlap 3793689 CTAGATAACAAAAAA GGGCCTAGAT TCTC ATCTAAGCCC TTTTGACCTTAACGC TERM 3737 3793689 - 3793712 + T 84 -9.6 -4.19238 | opp_overlap 3793689 CTAGATAACAAAAAA GGGCCTAGAT TCTC ATCTAAGCCC TTTTGACCTTAACGC Shew_3187 3795933 - 3793777 - | hypothetical protein TERM 3738 3796028 - 3796045 + r 100 -12.7 -3.99806 | opp_overlap 3796015 3796028 AAGCCCTACAAAAAA GTCGGGC AATG GCCCGAC TTTATCATAAATTCT TERM 3739 3796045 - 3796028 - R 100 -12.7 -5.25803 | opp_overlap 3796028, overlap 3796015 AAGCCCTACAAAAAA GTCGGGC AATG GCCCGAC TTTATCATAAATTCT Shew_3188 3797344 - 3796157 - | aromatic amino acid permease TERM 3740 3797827 - 3797806 - H 81 -11.7 -3.09834 | opp_overlap 3797808 3797809, overlap 3797809 CAGGGGAGTAGCTAA CAAGGCAAA GCCA TTTGCCTTG AGTGAGTGTCAACAT Shew_3189 3797974 - 3798528 + | hypothetical protein TERM 3741 3798576 - 3798597 + T 100 -13.1 -4.45168 | opp_overlap 3798576 GCTGGATAGCAAAAA GCCAGTGAT TCAG ATCACTGGC TTTCTATTTTCAGGC TERM 3742 3798597 - 3798576 - T 100 -13.1 -4.8048 | opp_overlap 3798576 GCTGGATAGCAAAAA GCCAGTGAT TCAG ATCACTGGC TTTCTATTTTCAGGC Shew_3190 3800116 - 3798656 - | catalase Shew_3191 3801079 - 3800828 - | hypothetical protein Shew_3192 3801683 - 3801234 - | hypothetical protein TERM 3743 3802324 - 3802302 - R 100 -10.6 -5.64274 | opp_overlap 3802306, overlap 3802287 GCAGGCATAAAAAAA GCCAGCTG GGGAGAA CAGCTGGC TTGGGAGAGACTTGG Shew_3193 3804959 - 3802344 - | endonuclease/exonuclease/phosphatase TERM 3744 3804919 - 3804942 + g 72 -3.8 -4.6902 | overlap 3804920 GGCAAAGCCGCGGCT ATTGACAGTG CAAG CACTGACAAC TTTTTAACATTATCC Shew_3194 3806286 - 3805624 - | LuxR family transcriptional regulator TERM 3745 3805806 - 3805822 + g 73 -8 -4.09685 | ACTGTATGATGGTGC GCTCAC GAGTG GTGAGC TTTTGCAGCATGGCG TERM 3746 3806535 - 3806482 - R 70 -6.8 -4.07124 | opp_overlap 3806502, overlap 3806491 TATTAGTTATATAAA GCTAACTCATCACATCATTAGCAT ATAATA ATGCTTCTGATGTGATAGGCAAGC TACAGATTATTATTG Shew_3195 3807150 - 3806545 - | hypothetical protein Shew_3196 3807583 - 3808812 + | D-3-phosphoglycerate dehydrogenase TERM 3747 3808868 - 3808850 - f 91 -8.8 -5.00884 | opp_overlap 3808850 3808866 AGCGTCGCGAAAAAA GGCATCAC TCT GTGGTGCC TTTTTCTTTTACAAG TERM 3748 3808850 - 3808868 + F 100 -11 -5.45802 | opp_overlap 3808850, overlap 3808866 AGCGTCGCGAAAAAA GGCATCAC TCT GTGGTGCC TTTTTCTTTTACAAG Shew_3197 3808954 - 3809496 + | hypothetical protein Shew_3198 3809680 - 3810648 + | glycine cleavage T protein (aminomethyl transferase) TERM 3749 3810682 - 3810668 - T 100 -12.8 -4.7373 | opp_overlap 3810668 TGATTTCACCAAAAA GGCGCC AAT GGCGCC TTTTTTAATGCACTT TERM 3750 3810668 - 3810682 + T 100 -12.8 -5.16237 | opp_overlap 3810668 TGATTTCACCAAAAA GGCGCC AAT GGCGCC TTTTTTAATGCACTT Shew_3199 3811795 - 3810776 - | response regulator receiver modulated metal dependent phosphohydrolase Shew_3200 3817317 - 3812011 - | multi-sensor hybrid histidine kinase TERM 3751 3813242 - 3813218 - G 70 -5 -4.36914 | gap 1 GCCTTGTCGATAAAA TCACCGTCGGC ATGG GCCGA-GACGA TCAGCGTCTTGGGCG TERM 3752 3814792 - 3814828 + g 73 -12.1 -2.94747 | CCCAGAGGCGCTCTC GCCGGAGAGGGCGCGAA TGA TGCGGGCCCGCTCCGAC TCTATGATGCAGTCG TERM 3753 3815869 - 3815838 - G 74 -10.2 -3.65351 | gap 1 GCATCTCGATGGAAA GCAGCTCGCCGTTGT CCG ACAATAGCG-GCTGC ATGAAGAGATCCAGG TERM 3754 3818399 - 3818382 - g 74 -11.3 -3.28712 | opp_overlap 3818370 GGCCCTGGCCCACAA GCCAGCA TTAT TGCTGGC GGACGAACCCACGGG Shew_3201 3817906 - 3818571 + | ABC transporter-related protein TERM 3755 3819992 - 3819975 - g 73 -5.5 -4.52589 | opp_overlap 3819978, overlap 3819978 GCCTGCTACAGAAAA TCAGCCC CAAG GGGCTTA TCGGCTATCAGATCA Shew_3202 3818564 - 3821116 + | hypothetical protein Shew_3203 3821113 - 3822351 + | hypothetical protein Shew_3204 3822966 - 3822388 - | cytochrome B561 Shew_3205 3823342 - 3823611 + | NapD family protein Shew_3206 3823608 - 3826091 + | nitrate reductase napG 3826150 - 3826881 + | quinol dehydrogenase periplasmic component TERM 3756 3827505 - 3827529 + G 70 -9.9 -3.39018 | overlap 3827500 3827521 GAACGGGCCTGGTGT GGTCACCTGTG TCC CACAGGCGCCC TGTTTGCCCTGCTGG napH 3826878 - 3827777 + | quinol dehydrogenase membrane component Shew_3209 3827774 - 3828196 + | nitrate reductase cytochrome c-type subunit (NapB) TERM 3757 3828274 - 3828243 - f 93 -12.5 -3.55563 | opp_overlap 3828250, overlap 3828250 ATTTGACGCTGCAAA CAAAAAACCACCC GATAAT GGGTGGTTTTTTA TTGCCTGGCGGCAAT TERM 3758 3828267 - 3828250 - f 100 -8.4 -5.63517 | opp_overlap 3828250, overlap 3828243 GCTGCAAACAAAAAA CCACCC GATAAT GGGTGG TTTTTTATTGCCTGG TERM 3759 3828250 - 3828267 + F 100 -9.1 -5.4833 | opp_overlap 3828250 3828243 GCTGCAAACAAAAAA CCACCCG ATAA TGGGTGG TTTTTTATTGCCTGG Shew_3210 3828726 - 3829013 + | hypothetical protein Shew_3211 3829066 - 3829662 + | glutathione S-transferase domain-containing protein Shew_3212 3829732 - 3830226 + | cell division protein ZipA TERM 3760 3830962 - 3830984 + T 71 -4.8 -4.4767 | AATTTCGCTTTCAGT TGCATTGGGT ATT ACTCAGAGCA TTTTCTGGTCGCTAG TERM 3761 3831490 - 3831478 - T 73 -6.3 -4.32201 | opp_overlap 3831477, overlap 3831481 CCAAGCAATTCAAAA CAATG AAG CATTG GTCTTCAGCAGGCAA Shew_3213 3832264 - 3831854 - | glyoxalase/bleomycin resistance protein/dioxygenase Shew_3214 3832483 - 3832743 + | hypothetical protein Shew_3215 3832865 - 3835471 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 3762 3835465 - 3835449 - T 76 -10.9 -3.07935 | overlap 3835451 AGGTTAGGCAGGCAA CAGCTGA TCG TCAGCTG GAATAATCAACACAT Shew_3216 3836336 - 3835437 - | hypothetical protein Shew_3217 3836432 - 3837625 + | sodium/hydrogen exchanger TERM 3763 3837660 - 3837679 + T 100 -13.6 -3.55563 | opp_overlap 3837660 CCTCAGGCAAAAAAA TACCCGCC AGAA GGCGGGTA TTTAGCAGCTAGCGT TERM 3764 3837679 - 3837660 - T 100 -13.6 -5.47218 | opp_overlap 3837660 CCTCAGGCAAAAAAA TACCCGCC AGAA GGCGGGTA TTTAGCAGCTAGCGT Shew_3218 3842251 - 3837701 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 3765 3842532 - 3842561 + G 79 -3.5 -5.01732 | gap 1 TGCAACGCGATACCC GCAATCTCAGCCTG ACT CAGGTTG-GAGCGC TTTTTTACCAGCATT Shew_3219 3842372 - 3843283 + | LysR family transcriptional regulator Shew_3220 3844132 - 3843326 - | Beta-lactamase TERM 3766 3844504 - 3844490 - H 73 -10 -3.03441 | CATCATTGCCCAACA TCAGCC TTA GGCTGA GTGTAAGGTTAAGAG Shew_3221 3844542 - 3845702 + | hypothetical protein TERM 3767 3845739 - 3845719 - f 86 -11.1 -4.07885 | opp_overlap 3845719 CACTCCTCCTGAAAA CGCCCGC TCTCTTG GCGGGCG TCTATCACCTAACGC TERM 3768 3845719 - 3845739 + F 80 -11.8 -2.89564 | opp_overlap 3845719 CACTCCTCCTGAAAA CGCCCGCT CTCTT GGCGGGCG TCTATCACCTAACGC Shew_3222 3845775 - 3846386 + | protein of unknown function DUF335, SprT Shew_3223 3846562 - 3847317 + | deoxyribonuclease I Shew_3224 3847321 - 3848052 + | hypothetical protein TERM 3769 3848162 - 3848193 + G 78 -13 -3.22618 | overlap 3848160 CTCCAGCTTCGCCAT GTTGATGGCGGCGC AGTC GCGCGGCTATCAGC TCTATTATATGGAGA Shew_3225 3848091 - 3849038 + | glutathione synthetase Shew_3226 3849051 - 3850682 + | alkaline phosphatase Shew_3227 3853213 - 3850736 - | diguanylate cyclase/phosphodiesterase Shew_3228 3854414 - 3853218 - | hypothetical protein Shew_3229 3854838 - 3854398 - | hypothetical protein Shew_3230 3855021 - 3856049 + | rRNA (guanine-N(2)-)-methyltransferase TERM 3770 3856086 - 3856101 + F 81 -6 -5.00616 | overlap 3856088 AATCTGTTGTTTAAC GCCGGG ATCG CCCGAC TTTTTTCGCACGAGA TERM 3771 3856534 - 3856510 - g 70 -10 -3.4252 | overlap 3856527 CCTCAGCGACGACAA GATGAGCGCC GAGAT GACGCTCACC GCCCCCTGGGGGGGC Shew_3231 3856235 - 3857905 + | hypothetical protein TERM 3772 3857955 - 3857928 - f 81 -11.2 -3.25719 | opp_overlap 3857929, overlap 3857929 3857931 TGATTAGACGACTAA GGAGGCCCGGCA AAAT TGTCGGGCCTCT TTTCTTTGCCATGGC TERM 3773 3857954 - 3857929 - f 89 -14.7 -2.5511 | opp_overlap 3857929, overlap 3857928 3857931 GATTAGACGACTAAG GAGGCCCGGCA AAAT TGTCGGGCCTC TTTTCTTTGCCATGG TERM 3774 3857929 - 3857954 + F 100 -16.9 -4.88918 | opp_overlap 3857928 3857929 3857931 GATTAGACGACTAAG GAGGCCCGGCA AAAT TGTCGGGCCTC TTTTCTTTGCCATGG TERM 3775 3857952 - 3857931 - f 77 -11.5 -2.80988 | opp_overlap 3857929, overlap 3857929 3857928 TTAGACGACTAAGGA GGCCCGGCA AAAT TGTCGGGCC TCTTTTCTTTGCCAT Shew_3232 3857943 - 3859121 + | peptidase M50 TERM 3776 3859397 - 3859376 - f 81 -2.3 -5.47218 | TTTTAGTCAAAAAAA CAGCAAATA TAGG TATTTTCCG ATCCCCACCTAGGGA Shew_3233 3859531 - 3860301 + | Crp/FNR family transcriptional regulator TERM 3777 3860346 - 3860320 - T 83 -7.3 -4.75372 | gap 1, opp_overlap 3860323 3860324 3860325, overlap 3860324 ATCATTCATCAAAAA CTAA-GGCACCC ATCT GGGTGCCATTTG GTGCTTCATTTTAGT TERM 3778 3860323 - 3860342 + T 79 -9.2 -3.87378 | opp_overlap 3860320 3860324, overlap 3860324 3860325 ATTCATCAAAAACTA AGGCACCC ATCT GGGTGCCA TTTGGTGCTTCATTT TERM 3779 3860324 - 3860341 + T 82 -12.7 -2.91342 | opp_overlap 3860320 3860324, overlap 3860323 3860325 TTCATCAAAAACTAA GGCACCC ATCT GGGTGCC ATTTGGTGCTTCATT TERM 3780 3860341 - 3860324 - T 100 -12.7 -3.84901 | opp_overlap 3860324 3860323 3860325, overlap 3860320 TTCATCAAAAACTAA GGCACCC ATCT GGGTGCC ATTTGGTGCTTCATT TERM 3781 3860449 - 3860436 - T 71 -8.1 -3.75153 | CTGCGCTAATTTAAA GTGCC TTTG GGCAC TAGGCCATAGATAGC Shew_3234 3861277 - 3860426 - | hypothetical protein Shew_3235 3862770 - 3861274 - | integral membrane sensor signal transduction histidine kinase Shew_3236 3863353 - 3862928 - | hypothetical protein TERM 3782 3863377 - 3863402 + r 72 -10.5 -2.92667 | opp_overlap 3863382, overlap 3863382 ACCTCTCTACAGGTA AAAAAGGTGCC CGAA GGCACCTTTTA TCGTTTAACGATTCA TERM 3783 3863382 - 3863397 + r 91 -10.4 -4.61566 | opp_overlap 3863382, overlap 3863377 TCTACAGGTAAAAAA GGTGCC CGAA GGCACC TTTTATCGTTTAACG TERM 3784 3863397 - 3863382 - R 93 -10.4 -5.1287 | opp_overlap 3863382 3863377 TCTACAGGTAAAAAA GGTGCC CGAA GGCACC TTTTATCGTTTAACG Shew_3237 3867945 - 3863407 - | Na-Ca exchanger/integrin-beta4 TERM 3785 3867886 - 3867871 - G 70 -3.2 -4.77165 | GGCTGCACAAGAAAA GGCG CTGACCGT CGCC AATAATCCCGCTAGC Shew_3238 3868778 - 3868128 - | hypothetical protein TERM 3786 3868837 - 3868814 - R 100 -18.2 -4.81249 | opp_overlap 3868806 3868814 TGCTAAAGGTAAAAA GCCAGCGCGA GGCT TCGCGCTGGC TTAATCACACTTATG TERM 3787 3868814 - 3868837 + r 100 -18.2 -3.17219 | opp_overlap 3868814, overlap 3868806 TGCTAAAGGTAAAAA GCCAGCGCGA GGCT TCGCGCTGGC TTAATCACACTTATG Shew_3239 3873455 - 3868848 - | Na-Ca exchanger/integrin-beta4 TERM 3788 3873658 - 3873635 - R 83 -3.8 -5.40072 | gap 1, opp_overlap 3873647, overlap 3873637 GTTTGGCGAAAAAAA GCGCCG-GC TCACTCG GCTCGGCAC GCAGGAACGCCGTCG TERM 3789 3873815 - 3873789 - R 74 -6.6 -4.43477 | overlap 3873792 3873806 TCGATGTAACGAAAA CTATCTTAGCTT AGA AAGCCAAGACGG TTAGCGAATGAATGA TERM 3790 3873812 - 3873792 - R 70 -9.1 -3.1867 | overlap 3873789 3873806 ATGTAACGAAAACTA TCTTAGCTT AGA AAGCCAAGA CGGTTAGCGAATGAA Shew_3240 3874480 - 3873857 - | two component LuxR family transcriptional regulator Shew_3241 3874687 - 3876579 + | TonB-dependent receptor Shew_3242 3876957 - 3877919 + | LysR family transcriptional regulator TERM 3791 3877960 - 3877930 - T 100 -4.9 -5.93252 | opp_overlap 3877930, overlap 3877956 GCTAAAAAGAAAAAA CTCTATCTATC AAAGCTAAG GATAAATAGAG TATCTAGGTAAAACC TERM 3792 3878087 - 3878061 - T 71 -9.3 -3.41726 | opp_overlap 3878062, overlap 3878059 3878062 AACAGCGTAATAAGA TGCGCCGCCTC GAAAT GACGCGGCGCT TTCTTTGGGTCAGAC TERM 3793 3878086 - 3878062 - T 81 -12.8 -2.64313 | opp_overlap 3878062, overlap 3878061 3878059 ACAGCGTAATAAGAT GCGCCGCCTC GAAAT GACGCGGCGC TTTCTTTGGGTCAGA TERM 3794 3878062 - 3878086 + T 100 -13.5 -4.46112 | opp_overlap 3878062 3878061 3878059 ACAGCGTAATAAGAT GCGCCGCCTCG AAA TGACGCGGCGC TTTCTTTGGGTCAGA Shew_3243 3881171 - 3878097 - | molydopterin dinucleotide-binding region Shew_3244 3881892 - 3881176 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shew_3245 3882798 - 3881902 - | polysulphide reductase, NrfD TERM 3795 3883158 - 3883168 + H 72 -5.4 -4.56597 | opp_overlap 3883158 TATTCTCCTGCAAGA TGCA AAT TGCA TTTTTACCAAAACAG Shew_3246 3883355 - 3884032 + | hypothetical protein TERM 3796 3884092 - 3884064 - f 72 -8.7 -3.694 | opp_overlap 3884064 3884066, overlap 3884060 3884066 3884068 AGTTAAAATAAGCAA GAGATGGGGCGCC GAA GGCGCTCCAGCTG TTTAGGCTAGAGGCT TERM 3797 3884064 - 3884092 + F 83 -10.9 -3.60098 | opp_overlap 3884060 3884064 3884066 3884068, overlap 3884066 AGTTAAAATAAGCAA GAGATGGGGCGCC GAA GGCGCTCCAGCTG TTTAGGCTAGAGGCT TERM 3798 3884066 - 3884090 + F 100 -13.5 -3.38046 | opp_overlap 3884064 3884060 3884066 3884068, overlap 3884064 TTAAAATAAGCAAGA GATGGGGCGCC GAA GGCGCTCCAGC TGTTTAGGCTAGAGG TERM 3799 3884090 - 3884066 - f 83 -11.3 -3.41416 | opp_overlap 3884066 3884064, overlap 3884064 3884060 3884068 TTAAAATAAGCAAGA GATGGGGCGCC GAA GGCGCTCCAGC TGTTTAGGCTAGAGG TERM 3800 3884088 - 3884068 - f 86 -12.5 -3.25762 | opp_overlap 3884066 3884064, overlap 3884066 3884064 3884060 AAAATAAGCAAGAGA TGGGGCGCC GAA GGCGCTCCA GCTGTTTAGGCTAGA TERM 3801 3884218 - 3884233 + F 79 -9 -3.98649 | opp_overlap 3884218 TCAGGCATAAAAAAA CCTGCT ATTA AGCAGG TTCTTATCTCTTCTA TERM 3802 3884233 - 3884218 - f 100 -9 -5.64274 | opp_overlap 3884218 TCAGGCATAAAAAAA CCTGCT ATTA AGCAGG TTCTTATCTCTTCTA TERM 3803 3884464 - 3884450 - f 76 -8.6 -3.90588 | opp_overlap 3884447 3884450 CACTCCCGAAGGAAA CGGATT TTG AATCCG TCGTGTCTACCAATT Shew_3247 3884805 - 3884933 + | hypothetical protein TERM 3804 3884974 - 3884993 + T 100 -9.2 -5.71712 | opp_overlap 3884975, overlap 3884975 ATATTTCTAATGCAA ATGGGGGC TTAT GCCCCCAC TTTTTTTATCTAGCG TERM 3805 3884975 - 3884992 + T 100 -12.7 -4.01943 | opp_overlap 3884975, overlap 3884974 TATTTCTAATGCAAA TGGGGGC TTAT GCCCCCA CTTTTTTTATCTAGC TERM 3806 3884992 - 3884975 - T 100 -12.7 -3.75629 | opp_overlap 3884975 3884974 TATTTCTAATGCAAA TGGGGGC TTAT GCCCCCA CTTTTTTTATCTAGC Shew_3248 3885677 - 3885066 - | hypothetical protein TERM 3807 3885725 - 3885700 - H 76 -4 -5.03314 | overlap 3885701 3885710 CCTAGTGTCAAAAAA CCTGCAGTAA GCAGAA TAACTGCAAG TAAAATGCCAACACG Shew_3249 3885907 - 3887547 + | integral membrane sensor signal transduction histidine kinase Shew_3250 3888784 - 3887555 - | peptidase T Shew_3251 3889709 - 3888897 - | UBA/THIF-type NAD/FAD binding protein TERM 3808 3890046 - 3890030 - H 93 -5.2 -5.47218 | overlap 3890035 CGTTAGCTAAAAAAA TCAAAG GCCCT CTTTGA GATGGCCATAATCGC TERM 3809 3890053 - 3890035 - H 87 -8.8 -4.5187 | overlap 3890030 GCTAAAAAAATCAAA GGCCCTCT TTG AGATGGCC ATAATCGCTACAGGA Shew_3252 3890077 - 3891135 + | porin TERM 3810 3891155 - 3891172 + T 100 -14.1 -4.28774 | opp_overlap 3891155 ATCAGCTTAAGAAAA GGCGGCC CCAA GGCCGCC TTTTACGTTACATGA TERM 3811 3891172 - 3891155 - T 100 -14.1 -4.66318 | opp_overlap 3891155 ATCAGCTTAAGAAAA GGCGGCC CCAA GGCCGCC TTTTACGTTACATGA Shew_3253 3891512 - 3891249 - | hypothetical protein Shew_3254 3892235 - 3891675 - | cytochrome c family protein Shew_3255 3892760 - 3892287 - | hypothetical protein TERM 3812 3892734 - 3892716 - G 71 -8 -3.91357 | overlap 3892719 CGACAATGACAATAA GAGCGCCG ATA CGGCGACC AGGGAAGTGTGTATG Shew_3256 3893749 - 3892793 - | copper resistance B precursor TERM 3813 3892878 - 3892863 - G 74 -10.4 -3.65812 | opp_overlap 3892863 3892862 3892860 GCCGCTTCAAGATAA TCGGCG GTTG CGCCGA ATGTTTCTCTGCGCT Shew_3257 3895491 - 3893746 - | CopA family copper resistance protein Shew_3258 3895743 - 3896459 + | two component heavy metal response transcriptional regulator Shew_3259 3896461 - 3897849 + | heavy metal sensor signal transduction histidine kinase TERM 3814 3898013 - 3898030 + F 74 -5.5 -4.62904 | overlap 3898014 TCAGCGCGCCAATAT TTGTGCG TAAG CGCACAC TTTTTAAACATATTT TERM 3815 3898014 - 3898029 + F 71 -9 -3.36658 | overlap 3898013 CAGCGCGCCAATATT TGTGCG TAAG CGCACA CTTTTTAAACATATT TERM 3816 3898371 - 3898361 - f 72 -5.4 -4.5366 | TTAAAAAATGGAAAA GAAC TCA GTTC TTGGGAGCACAATAC TERM 3817 3898996 - 3898986 - g 70 -5.4 -4.4715 | GTTCAAGGCACAAAA CTAC TAT GTAG CAGTAGCTTACAACA Shew_3260 3898387 - 3899415 + | porin TERM 3818 3899439 - 3899468 + T 100 -14.5 -3.89881 | gap 1, opp_overlap 3899445, overlap 3899439 3899445 GCCTCAGGCTCTGAT G-AAAAAGGCGACC TCT GGTCGCCTTTTTGC TTTCTAACGCTTAAT TERM 3819 3899439 - 3899467 + T 89 -14.7 -2.93447 | opp_overlap 3899445, overlap 3899439 3899445 GCCTCAGGCTCTGAT GAAAAAGGCGACC TCT GGTCGCCTTTTTG CTTTCTAACGCTTAA TERM 3820 3899461 - 3899445 - T 100 -13.7 -4.72272 | opp_overlap 3899445 3899439 3899439 GGCTCTGATGAAAAA GGCGACC TCT GGTCGCC TTTTTGCTTTCTAAC TERM 3821 3899445 - 3899461 + T 100 -13.7 -5.04601 | opp_overlap 3899445, overlap 3899439 3899439 GGCTCTGATGAAAAA GGCGACC TCT GGTCGCC TTTTTGCTTTCTAAC Shew_3261 3900180 - 3899524 - | thiopurine S-methyltransferase TERM 3822 3900235 - 3900285 + r 77 -9.7 -3.70773 | overlap 3900249 ACTCTAATCTCTCGT CGGCCAAGATGCCAGCTTACCGA TTATT TCGGCAAGCTTTTCTCTTGGTCG TTATTGAATATCCAG TERM 3823 3900249 - 3900271 + r 85 -7.7 -4.71186 | overlap 3900235 TCGGCCAAGATGCCA GCTTACCGA TTATT TCGGCAAGC TTTTCTCTTGGTCGT Shew_3262 3900630 - 3900286 - | hypothetical protein Shew_3263 3900842 - 3902677 + | serine/threonine protein kinase Shew_3264 3903304 - 3902711 - | FxsA cytoplasmic membrane protein TERM 3824 3903030 - 3903018 - G 74 -7.7 -4.33153 | GTTAATAGCAATAAA CCGAT AAA ATCGG TCACGAAGCCAGGGA Shew_3265 3903830 - 3904153 + | CutA1 divalent ion tolerance protein TERM 3825 3905806 - 3905796 - g 70 -3.2 -4.7373 | CGACGTGACCAAAAA CGAC GCC ATCG ATATCGAGCTGCTGG dipZ 3904150 - 3905958 + | thiol:disulfide interchange protein precursor TERM 3826 3906004 - 3905991 - f 85 -8.1 -4.68424 | opp_overlap 3905991 TAAGCTACCTAAAAA CCTCC TGCG GGAGG TTTTTTATTAAGGGC TERM 3827 3905991 - 3906004 + F 95 -8.1 -5.4505 | opp_overlap 3905991 TAAGCTACCTAAAAA CCTCC TGCG GGAGG TTTTTTATTAAGGGC Shew_3267 3906111 - 3907739 + | sodium/hydrogen exchanger TERM 3828 3907792 - 3907828 + F 70 -10.3 -2.62184 | opp_overlap 3907786 3907785 CCCAAATATCTTGTA TTGTACTTGCCATCCTG CGA TAAGATGGGAAGTACAA TACTGTGCCGACAAA Shew_3268 3907833 - 3908834 + | hypothetical protein TERM 3829 3910867 - 3910847 - g 74 -3.2 -4.85599 | overlap 3910849 TGGACGCTACAAAAA GATGGCAA GATCA TCGCCAGC AAGCGCCAGGCCATG Shew_3269 3908831 - 3912061 + | Beta-galactosidase Shew_3270 3912080 - 3913504 + | SSS family solute/sodium (Na+) symporter TERM 3830 3913733 - 3913718 - f 77 -10.4 -3.45742 | overlap 3913716 CCACCATGAACAAGA CTGCCC ACAG GGGCAG AGAACGCTAACTTTT Shew_3271 3913768 - 3914934 + | galactokinase Shew_3272 3915046 - 3916086 + | aldose 1-epimerase TERM 3831 3916164 - 3916125 - T 74 -10.9 -2.5155 | gap 1, opp_overlap 3916132 3916134, overlap 3916124 GAGAAGTAAAATGAT TTAGGTA-GGGGTTCCAG AGGGA CCGGAACCTCTTACCTAA GAATGGCGGCGAACT Shew_3273 3916637 - 3916203 - | hypothetical protein Shew_3274 3917961 - 3916948 - | alcohol dehydrogenase TERM 3832 3917327 - 3917338 + g 71 -7.2 -4.03234 | AGATCTACCCCTTGA GGCG CCAC CGCC TTTATCTGAGCCAGC Shew_3275 3918244 - 3918708 + | CheC domain-containing protein Shew_3276 3920024 - 3918735 - | hypothetical protein TERM 3833 3919439 - 3919414 - G 78 -6.1 -4.82901 | opp_overlap 3919428 3919432 TGCTCGGTATAAAAA GGGGTCAGC TCTATGCT GCTCACCCC AGAGGTGAGTGGGTT TERM 3834 3919992 - 3919962 - G 100 -10.4 -5.03145 | overlap 3919950 3919966 CAAGCCTGTAAAAAA CAGACGGCTAGCCC GAG AAGCTAGCCGCGTG AGAGATATTTTCGCC TERM 3835 3919988 - 3919966 - G 79 -12 -3.66166 | overlap 3919962 CCTGTAAAAAACAGA CGGCTAGCCC GAG AAGCTAGCCG CGTGAGAGATATTTT alr 3921105 - 3920029 - | alanine racemase Shew_3278 3922621 - 3921215 - | replicative DNA helicase TERM 3836 3924344 - 3924328 - g 79 -6.5 -4.7373 | CTAGCCCAGGAAAAA GCCAAGA AGA CCCTGGC CGGAAAGCTGTCTAA Shew_3279 3922738 - 3924942 + | hypothetical protein TERM 3837 3924986 - 3925004 + F 100 -14.6 -5.68023 | opp_overlap 3924986 TACCCAATCGACAAA TACCCGGC CTC GCCGGGTA TTTTTTTACTTGTCG TERM 3838 3925004 - 3924986 - f 100 -14.6 -3.98083 | opp_overlap 3924986 TACCCAATCGACAAA TACCCGGC CTC GCCGGGTA TTTTTTTACTTGTCG Shew_3280 3925049 - 3925486 + | hypothetical protein TERM 3839 3925510 - 3925536 + T 100 -13.8 -4.74518 | opp_overlap 3925510 TCAGGCATAAAAAAA CACCGCACTAAT CAG ATTAGCGCGGTG TTTCTTTTAATCGTT TERM 3840 3925536 - 3925510 - T 100 -16 -5.64274 | opp_overlap 3925510 TCAGGCATAAAAAAA CACCGCACTAAT CAG ATTAGCGCGGTG TTTCTTTTAATCGTT rplI 3926016 - 3925564 - | 50S ribosomal protein L9 Shew_3282 3926271 - 3926044 - | ribosomal protein S18 Shew_3283 3926502 - 3926284 - | single-strand binding protein/primosomal replication protein N rpsF 3927005 - 3926598 - | 30S ribosomal protein S6 TERM 3841 3927176 - 3927191 + H 76 -4 -5.1523 | CCCGGTGAAACGGTA TGATAG TCCG CTGTCA TTTTTGTGTTCTAGA Shew_3285 3927228 - 3927971 + | hypothetical protein Shew_3286 3929334 - 3928777 - | hypothetical protein Shew_3287 3929801 - 3929466 - | hypothetical protein TERM 3842 3930031 - 3930041 + r 83 -5.4 -5.19261 | CTCCCTATTAAATGG CTGA TGC TCAG TTTTTTACTAAATTT TERM 3843 3930099 - 3930089 - R 87 -6.8 -5.20328 | TTTTAAAAAAACAAA GCGA GAA TCGC AAGATACATAGTAGG TERM 3844 3930765 - 3930790 + r 83 -11.9 -3.16742 | opp_overlap 3930765 CATCGGATACAAAAA TGCCGATGAAG TCTC CCTCATCGGCA TTCATCAACCTTGAG TERM 3845 3930790 - 3930765 - R 100 -14.1 -4.9792 | opp_overlap 3930765 CATCGGATACAAAAA TGCCGATGAAG TCTC CCTCATCGGCA TTCATCAACCTTGAG Shew_3288 3931580 - 3930840 - | 23S rRNA (guanosine-2'-O-)-methyltransferase Shew_3289 3934069 - 3931595 - | ribonuclease R TERM 3846 3931758 - 3931781 + g 72 -9.5 -3.58565 | GCATCGCTGCGTCTG GCGGAGCGG CGCTTA CCGCTCGGC TTGTCATCTTCTTTA Shew_3290 3934813 - 3934127 - | Sel1 domain-containing protein TERM 3847 3935050 - 3935066 + r 74 -10.8 -2.7127 | opp_overlap 3935050, overlap 3935049 CCCTAAAAATAAAAA GGCCGC TTAAC GCGGCC CTTATGATTAACTGA TERM 3848 3935066 - 3935050 - R 100 -10.8 -5.61881 | opp_overlap 3935050 3935049 CCCTAAAAATAAAAA GGCCGC TTAAC GCGGCC CTTATGATTAACTGA Shew_3291 3936369 - 3935074 - | adenylosuccinate synthetase Shew_3292 3936624 - 3936436 - | hypothetical protein TERM 3849 3936705 - 3936689 - R 100 -9.4 -5.65177 | opp_overlap 3936689 ACAGCCATAAAAAAA CCCAGC ACAAG GCTGGG TTTTTCCAATCTTCG TERM 3850 3936689 - 3936705 + r 91 -9.4 -4.66953 | opp_overlap 3936689 ACAGCCATAAAAAAA CCCAGC ACAAG GCTGGG TTTTTCCAATCTTCG rpsI 3937123 - 3936731 - | 30S ribosomal protein S9 rplM 3937570 - 3937139 - | 50S ribosomal protein L13 Shew_3295 3938950 - 3937844 - | AFG1 family ATPase TERM 3851 3939126 - 3939113 - H 74 -3.9 -4.92777 | AAGACTAACGAAAAA TTAAC CTTT GTTAA TCACCTGAACTTTAT Shew_3296 3939261 - 3940613 + | protease Do TERM 3852 3940623 - 3940661 + F 100 -12.6 -5.01553 | gap 1, opp_overlap 3940614 3940625 3940635 AGATAAGCCGCACTA GAGGCCATGACA-GGGT TTACAC ACCCGTGTTGTGGCCTC TTTTATTTCTAGCTT Shew_3297 3940751 - 3941830 + | periplasmic serine protease DegS TERM 3853 3941881 - 3941906 + T 91 -10.5 -4.72127 | opp_overlap 3941886, overlap 3941886 CAAAGTCCGCAGACA AAAAAGCCAGC ATTC GCTGGCTTTTC TTTTATCTATTCTCT TERM 3854 3941886 - 3941901 + T 100 -10.4 -5.24647 | opp_overlap 3941886, overlap 3941881 TCCGCAGACAAAAAA GCCAGC ATTC GCTGGC TTTTCTTTTATCTAT TERM 3855 3941901 - 3941886 - T 100 -10.4 -5.36441 | opp_overlap 3941886 3941881 TCCGCAGACAAAAAA GCCAGC ATTC GCTGGC TTTTCTTTTATCTAT TERM 3856 3942239 - 3942224 - T 100 -10.4 -5.28176 | opp_overlap 3942224 TTCAGGCACAAAAAA GCCACC CTAA GGTGGC TTTGTAAGATAAAGC TERM 3857 3942224 - 3942239 + T 82 -10.4 -3.89346 | opp_overlap 3942224 TTCAGGCACAAAAAA GCCACC CTAA GGTGGC TTTGTAAGATAAAGC Shew_3298 3943519 - 3942260 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 3858 3943481 - 3943499 + g 78 -14.6 -2.69957 | overlap 3943478 3943477 AATCACCACGTCACC GGCCAGTG CAC CACTGGCC TGAATTGTTAATTTA Shew_3299 3943786 - 3943535 - | BolA family protein TERM 3859 3943808 - 3943828 + r 76 -10.5 -3.38768 | ATAACCCTTTTATTT GGCTTCTTC GGT GAAGAAGTC TTGTAAATCATATAA Shew_3300 3944095 - 3943802 - | anti-sigma-factor antagonist Shew_3301 3944748 - 3944095 - | toluene tolerance family protein Shew_3302 3945233 - 3944760 - | hypothetical protein TERM 3860 3945185 - 3945174 - G 71 -7.2 -4.07455 | CACCAACACCAGAAA GGCC ATCA GGCC CGACAGAATAAACAA Shew_3303 3946090 - 3945305 - | hypothetical protein Shew_3304 3946955 - 3946077 - | ABC transporter-related protein Shew_3305 3947121 - 3948080 + | CaCA family Na(+)/Ca(+) antiporter Shew_3306 3948114 - 3949091 + | KpsF/GutQ family protein Shew_3307 3949093 - 3949644 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase TERM 3861 3949736 - 3949718 - g 75 -5.9 -4.62069 | GGTTCAGTCGAAAAA GGGCAGC GAAGA GCTGGCC CTGGATAATGTCGAT Shew_3308 3949641 - 3950198 + | hypothetical protein Shew_3309 3950185 - 3950730 + | OstA family protein Shew_3310 3950727 - 3951458 + | ABC transporter-related protein Shew_3311 3951593 - 3953080 + | RNA polymerase factor sigma-54 Shew_3312 3953111 - 3953398 + | sigma 54 modulation protein/ribosomal protein S30EA Shew_3313 3953401 - 3953844 + | PTS IIA-like nitrogen-regulatory protein PtsN TERM 3862 3953838 - 3953850 + F 73 -6.3 -4.34402 | CTATCAGGTGATCAC CCAAT GAA ATTGG TTTTGGTATCCGGAC Shew_3314 3953841 - 3954689 + | hypothetical protein Shew_3315 3954682 - 3954957 + | phosphotransferase system, phosphocarrier protein HPr Shew_3316 3955058 - 3956425 + | magnesium transporter Shew_3317 3956530 - 3957213 + | two component transcriptional regulator Shew_3318 3957225 - 3958487 + | integral membrane sensor signal transduction histidine kinase Shew_3319 3958607 - 3958855 + | hypothetical protein TERM 3863 3959242 - 3959257 + T 74 -10.4 -3.20723 | opp_overlap 3959237 ACTTAAGCCAGTCAG CCCCCT CGAG AGGGGG TTACGTTAGTGAGAG Shew_3320 3960985 - 3959396 - | FG-GAP repeat-containing protein TERM 3864 3959730 - 3959744 + g 79 -12.8 -3.42996 | CTCATGTTTGGCTTG GCGGCG AAA CGCCGC TTATCGTCCATGGTA Shew_3321 3961922 - 3961149 - | hypothetical protein TERM 3865 3962299 - 3962312 + Gr 70 -9.5 -2.88236 | CTCCTTTCTGCTGTG GGGGC TACT GCCCC TCTACTATCAGTTTC Shew_3323 3963715 - 3963080 - | lipase-like Shew_3322 3962234 - 3963160 + | transporter DMT superfamily protein TERM 3866 3963763 - 3963747 - fH 73 -10.1 -3.06133 | opp_overlap 3963744 3963747 3963760 TAACGCCTGAGTTAA TCGCCCC CAA GGGGCAA ATATTTGCTATGATC Shew_3324 3963773 - 3964834 + | hypothetical protein TERM 3867 3965500 - 3965513 + G 73 -8.1 -4.12037 | TGATCGCCAAAATGG GCCAC AGAC GTGGC TTTGTGCTATTTCTC Shew_3325 3965280 - 3966449 + | major facilitator transporter Shew_3326 3967687 - 3966446 - | sodium/hydrogen exchanger Shew_3327 3969211 - 3967766 - | RNA-metabolising metallo-beta-lactamase TERM 3868 3969453 - 3969442 - H 76 -5.8 -4.8048 | TGCCCACACCAAAAA GGCT AATG AGCC TGACTAGGAGTAGAC Shew_3328 3969688 - 3972324 + | Ig domain-containing protein TERM 3869 3972354 - 3972382 + F 100 -8.9 -5.79595 | opp_overlap 3972348 3972354 3972349 3972356 CGGCAAGAACGAAAA GGCTCGATGAG ATAACCA CTCATCGGGTC TTTTTTGTTTTCAGC Shew_3329 3972575 - 3974506 + | diguanylate cyclase/phosphodiesterase with GAF sensor TERM 3870 3975158 - 3975184 + G 95 -11.6 -4.62069 | TCGCCGTGATCCTCT TGAGCCCCATCG CTC TGATGGGGGTCA TTTTTGGCCTCAGGG TERM 3871 3975588 - 3975612 + G 71 -8.6 -4.01853 | gap 1, overlap 3975587 CCGCGCCATGGATAT CTTCT-GCCGC CTCG GCGGCGAGGAG TTTCTGCTGGTGTTA Shew_3330 3974683 - 3975888 + | diguanylate cyclase Shew_3331 3976648 - 3975872 - | Crp/FNR family transcriptional regulator TERM 3872 3976709 - 3976686 - R 71 -8.2 -3.75153 | CTCCGTTAATCTAAA TCACAACCTG ATAA CAAGTCGTGA TCTAGATCATAATGA Shew_3332 3977223 - 3976771 - | hypothetical protein Shew_3333 3977882 - 3977244 - | electron transport protein SCO1/SenC Shew_3334 3978734 - 3977898 - | hypothetical protein TERM 3873 3978792 - 3978762 - R 80 -11.1 -3.40403 | opp_overlap 3978763, overlap 3978763 TCGTTGCGACGATAA TGGGCTCGAGCCT CACCT AGACCCGAGCCCT TTTTGCCTAAGCCCT TERM 3874 3978763 - 3978791 + r 91 -10.2 -4.65895 | opp_overlap 3978762 3978763 CGTTGCGACGATAAT GGGCTCGAGCCT CACCT AGACCCGAGCCC TTTTTGCCTAAGCCC TERM 3875 3978791 - 3978763 - R 89 -14.6 -2.64099 | opp_overlap 3978763, overlap 3978762 CGTTGCGACGATAAT GGGCTCGAGCCT CACCT AGACCCGAGCCC TTTTTGCCTAAGCCC Shew_3335 3980013 - 3978835 - | nitrite reductase, copper-containing TERM 3876 3980260 - 3980231 - R 93 -5.5 -5.53079 | overlap 3980232 AAAACAGACAAAAAA TCCCTGCTATCCC AGAT GGGACGGCGGGGT TAAAAGGACAATAGG TERM 3877 3980259 - 3980232 - R 79 -9 -3.88187 | overlap 3980231 AAACAGACAAAAAAT CCCTGCTATCCC AGAT GGGACGGCGGGG TTAAAAGGACAATAG Shew_3336 3980921 - 3980421 - | MarR family transcriptional regulator Shew_3337 3981099 - 3981995 + | hypothetical protein Shew_3338 3982084 - 3982293 + | TOBE domain-containing protein Shew_3339 3982839 - 3982465 - | glutathione-dependent formaldehyde-activating, GFA TERM 3878 3983492 - 3983480 - H 74 -7.7 -4.13767 | overlap 3983462 3983458 3983488 3983489 CTGGCGAGCCTAAAA GCCAA GAA TTGGC TGCCAAACCACTCAG TERM 3879 3983519 - 3983537 + H 86 -13.2 -2.9186 | opp_overlap 3983503 3983500, overlap 3983508 3983518 TCAGGCGCGCACCGG GTGCGACA CCT TGTCGCAC TATCTGAGATTGCCT Shew_3340 3983615 - 3985672 + | TonB-dependent receptor TERM 3880 3985712 - 3985738 + T 100 -12.3 -5.71712 | TCCACTGCGCTCCCG GCCCCGAGC ACCCTGCAC GCTCGGGGC TTTTTTTATCTACAA Shew_3341 3986728 - 3985748 - | diguanylate cyclase with GAF sensor TERM 3881 3986633 - 3986603 - G 85 -13.2 -3.7282 | GTATTGCACCAAGAA GCTGGCCGGCGCGT TAA ACACGTGGGCCAGC AGGTTAACGGTTTTC TERM 3882 3986929 - 3986901 - R 80 -10.3 -3.75437 | opp_overlap 3986902, overlap 3986902 AATTATGGGATGAAA TGCTCACTAGAGC AAT GCTCTAGCAAGCT TATTGACTGATATCT TERM 3883 3986928 - 3986902 - R 87 -13.8 -2.8478 | opp_overlap 3986902, overlap 3986901 ATTATGGGATGAAAT GCTCACTAGAGC AAT GCTCTAGCAAGC TTATTGACTGATATC TERM 3884 3986902 - 3986928 + r 77 -9.4 -3.70109 | opp_overlap 3986902 3986901 ATTATGGGATGAAAT GCTCACTAGAGC AAT GCTCTAGCAAGC TTATTGACTGATATC Shew_3342 3987465 - 3986929 - | two component Fis family transcriptional regulator Shew_3343 3988709 - 3987462 - | integral membrane sensor signal transduction histidine kinase Shew_3344 3989642 - 3988719 - | dTDP-4-dehydrorhamnose reductase Shew_3345 3990565 - 3989642 - | lipid kinase Shew_3346 3990767 - 3991450 + | hypothetical protein Shew_3347 3991453 - 3993333 + | hypothetical protein Shew_3348 3994309 - 3993368 - | pseudouridine synthase Shew_3349 3994921 - 3994343 - | ATP-dependent protease La Shew_3350 3996187 - 3995132 - | hypothetical protein Shew_3351 3996305 - 3996745 + | hypothetical protein Shew_3352 3996816 - 3997832 + | hypothetical protein Shew_3353 3997922 - 3998383 + | hypothetical protein TERM 3885 3998411 - 3998431 + F 100 -15.4 -4.3208 | CTTGCTGTTTGTTAA CGCCCGCG CCTGT CGCGGGCG TTTTGCCTTCTCGCA Shew_3354 3998747 - 4001026 + | aminotransferase, class V TERM 3886 4001053 - 4001094 + T 81 -11.7 -3.05596 | opp_overlap 4001055 4001065, overlap 4001065 ACGCCTTACCTAACC GACACAAAAAAACCGCATC AAAT GATGCGGTTTTTTATTGGC TTAACTAGACCACTA TERM 3887 4001092 - 4001055 - T 84 -12.9 -2.54896 | opp_overlap 4001053 4001065, overlap 4001065 GCCTTACCTAACCGA CACAAAAAAACCGCATC AAAT GATGCGGTTTTTTATTG GCTTAACTAGACCAC TERM 3888 4001065 - 4001082 + T 100 -11.3 -5.5074 | opp_overlap 4001055 4001065, overlap 4001053 ACCGACACAAAAAAA CCGCATC AAAT GATGCGG TTTTTTATTGGCTTA TERM 3889 4001082 - 4001065 - T 100 -11.3 -5.72616 | opp_overlap 4001065 4001053, overlap 4001055 ACCGACACAAAAAAA CCGCATC AAAT GATGCGG TTTTTTATTGGCTTA Shew_3355 4002327 - 4001107 - | hypothetical protein TERM 3890 4002914 - 4002896 - R 100 -16 -4.68424 | opp_overlap 4002911 TAACCGAGCGAAAAA GCGCGGCA TCC TGCCGCGC GTGCTCACTAAAGGG Shew_3356 4006332 - 4003102 - | CzcA family heavy metal efflux protein Shew_3357 4007574 - 4006345 - | RND family efflux transporter MFP subunit Shew_3358 4008936 - 4007656 - | outer membrane efflux family protein, putative Shew_3359 4009579 - 4009148 - | hypothetical protein Shew_3360 4009902 - 4009720 - | hypothetical protein Shew_3361 4010335 - 4009952 - | hypothetical protein Shew_3362 4010448 - 4010858 + | hypothetical protein Shew_3363 4010975 - 4011427 + | 3-dehydroquinate dehydratase, type II Shew_3364 4011434 - 4011865 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein Shew_3365 4011906 - 4013258 + | acetyl-CoA carboxylase, biotin carboxylase TERM 3891 4013261 - 4013302 + T 72 -9.6 -3.14132 | gap 1, opp_overlap 4013260 GCCTAGACGATAAGC GCCTGGATGCT-ACCTTTC TACCT GAAAGATGAGTGTCCAGGC TTCCTCCGCGCGCGA Shew_3366 4016526 - 4013329 - | metal dependent phosphohydrolase TERM 3892 4014695 - 4014685 - G 71 -6.8 -4.31412 | AAACACCCAGGAAAA TGGC AGC GCCA ACAGCAGACAGAGGC TERM 3893 4014823 - 4014790 - G 100 -9.5 -5.11033 | gap 1, overlap 4014792 CAGAATGGCAAAAAA CTC-CTGCTCGGCGGC GTG ACTGCCGAGCGGCGAG ACATAGACAAAACTG TERM 3894 4016217 - 4016191 - G 71 -7.2 -4.0371 | opp_overlap 4016211, overlap 4016192 GATGGCGTAGATAAA CCTAGCCGAGCG CAT CGCCTGGCTAAA CACCCGCTTGGCCTC Shew_3367 4017659 - 4016607 - | hypothetical protein Shew_3368 4018215 - 4017685 - | phosphoesterase, PA-phosphatase related TERM 3895 4018251 - 4018220 - R 100 -13.1 -4.78848 | GTCTGAAACATAAAA GGCTCCGGATCAT GATGAT ATGATCAGGAGCC TAAAAACTCGCTATG Shew_3369 4018574 - 4018320 - | hypothetical protein TERM 3896 4018805 - 4018820 + H 77 -3.2 -5.26119 | opp_overlap 4018785 4018805, overlap 4018788 CTATTATCGCCAATA GCGTGA GTTA TAACGC TTTTCTTTTTAAGAA Shew_3370 4018911 - 4019396 + | ribonuclease activity regulator protein RraA TERM 3897 4019449 - 4019467 + T 100 -14.6 -5.26918 | opp_overlap 4019449 CATTTAATCGTAAAA GGACGACC ACA GGTCGTCC TTTTTTGTGGCCTGT TERM 3898 4019467 - 4019449 - T 100 -14.6 -4.19953 | opp_overlap 4019449 CATTTAATCGTAAAA GGACGACC ACA GGTCGTCC TTTTTTGTGGCCTGT TERM 3899 4019625 - 4019637 + T 73 -9.1 -3.49653 | opp_overlap 4019623 TATGGTGTATCAATT GCCTG CGG CAGGC TTATGTGCAGGTACT Shew_3371 4020363 - 4019944 - | hypothetical protein TERM 3900 4020835 - 4020819 - H 81 -9.5 -4.08557 | GGCGTTAAATAACAA TGAAGGT GCA ACCTTCA AACACCCTCCCAACA TERM 3901 4021457 - 4021446 - g 71 -7.2 -4.15565 | overlap 4021447 GTTATGAGGGCAAAA CGCC ACTC GGCG AGCAGCTGGCGAGTG Shew_3372 4021340 - 4022383 + | arginase/agmatinase/formiminoglutamase TERM 3902 4022473 - 4022486 + F 71 -3.8 -4.77896 | CTCTGGTTGAAACTC TGCG CTATCA CGCA TTTTTCAATTAATTG Shew_3373 4022609 - 4023364 + | ubiquinone/menaquinone biosynthesis methyltransferase TERM 3903 4023399 - 4023418 + F 95 -8.5 -5.19328 | opp_overlap 4023399 4023397 TCTTATATCGAAAGA GGCCCCG CACAGT TGGGGCC TTTTTGTTGTCGCCT TERM 3904 4023657 - 4023642 - g 77 -3.2 -5.09225 | overlap 4023644 ACCGCACTCAAAAAA GTGACT CAGC AGTCTC CCGGCGCCTACGCCA Shew_3374 4023585 - 4024208 + | hypothetical protein TERM 3905 4024234 - 4024218 - g 81 -8.7 -4.51777 | AGATGACAATCAAAA GCATGCG GCG CGCATAC CAAGTCGTAAAGACG Shew_3375 4024205 - 4025854 + | 2-polyprenylphenol 6-hydroxylase TERM 3906 4026104 - 4026093 - g 79 -2.2 -5.26316 | CCAGCGCAGAAAAAA CAGC TCAG ACTG AAGAGAAAAAGACTG Shew_3376 4025915 - 4026145 + | twin arginine-targeting protein translocase Shew_3377 4026152 - 4026550 + | twin-arginine translocation protein, TatB subunit TERM 3907 4026771 - 4026784 + G 85 -4.5 -5.25803 | opp_overlap 4026771 CTCCCTTTAAACTGA CGCTG ATCC TAGCG TTTTTTATCGCCATT Shew_3378 4026554 - 4027309 + | Sec-independent protein translocase, TatC subunit TERM 3908 4027328 - 4027353 + F 100 -16.3 -4.21772 | opp_overlap 4027321 4027335 AACAGAATCTTGCTG CAAGCTATCCG GCAA CGGATAGCTTG TTGTTATTTATTACC Shew_3379 4027421 - 4027960 + | hypothetical protein Shew_3380 4027960 - 4028769 + | TatD-related deoxyribonuclease Shew_3381 4028756 - 4030624 + | diguanylate cyclase Shew_3382 4030716 - 4031732 + | delta-aminolevulinic acid dehydratase TERM 3909 4031755 - 4031776 + T 100 -12.3 -5.72622 | opp_overlap 4031755 TCTTTAAACAAAAAA GCCAGTGAC GCGA GTCGCTGGC TTTTTTGTTTCTGCG TERM 3910 4031776 - 4031755 - T 100 -10.1 -5.63517 | opp_overlap 4031755 TCTTTAAACAAAAAA GCCAGTGAC GCGA GTCGCTGGC TTTTTTGTTTCTGCG Shew_3383 4032372 - 4031812 - | hypothetical protein TERM 3911 4032575 - 4032542 - R 76 -3.7 -5.1675 | opp_overlap 4032542 GCAGGCATTAAAAAA GCCATGGCGCCGCTC CTAT AAGCAGTGTAATGGC TTTGTTTTTCATCCT TERM 3912 4032542 - 4032575 + r 77 -5.2 -4.92756 | opp_overlap 4032542 GCAGGCATTAAAAAA GCCATGGCGCCGCT CCTATA AGCAGTGTAATGGC TTTGTTTTTCATCCT ubiA 4033458 - 4032598 - | 4-hydroxybenzoate octaprenyltransferase TERM 3913 4033204 - 4033220 + g 71 -11.5 -3.14602 | overlap 4033189 GACCGTCACCTCGCC GCTGGCC AGG GGCCGGC TCTTGGTGCGCTCCA uvrD 4035756 - 4033576 - | DNA-dependent helicase II TERM 3914 4035878 - 4035897 + r 100 -15 -4.12902 | opp_overlap 4035878 GATGAACTATAAAAA GCCCAGGC AAGG GCCTGGGC TTTTGGGGATAGTTA TERM 3915 4035897 - 4035878 - R 100 -15 -4.99861 | opp_overlap 4035878 GATGAACTATAAAAA GCCCAGGC AAGG GCCTGGGC TTTTGGGGATAGTTA Shew_3386 4036864 - 4035929 - | band 7 protein Shew_3387 4037787 - 4036861 - | band 7 protein Shew_3388 4038278 - 4037817 - | hypothetical protein Shew_3389 4038577 - 4039332 + | hypothetical protein TERM 3916 4039377 - 4039362 - T 100 -11.8 -5.24129 | opp_overlap 4039362 TTTGCTCACAAAAAA GGCGCC TTCA GGCGCC TTTTTTAATCTCGCG TERM 3917 4039362 - 4039377 + T 100 -11.8 -5.21709 | opp_overlap 4039362 TTTGCTCACAAAAAA GGCGCC TTCA GGCGCC TTTTTTAATCTCGCG Shew_3390 4040167 - 4039409 - | uridine phosphorylase TERM 3918 4039659 - 4039638 - G 75 -8.7 -4.1466 | overlap 4039639 4039653 ATCGAACCGGCAAAA CGACGAGTC ACAC GACCCGTCA CGGTATCGTAACGCT Shew_3391 4040611 - 4040826 + | hypothetical protein TERM 3919 4040844 - 4040869 + T 89 -11.9 -3.68292 | opp_overlap 4040849, overlap 4040849 CGGACATCGGACATT AAAAAGGGCGC CTAG GCGCCCTTTTC TTATCTCTTAGAAAT TERM 3920 4040849 - 4040864 + T 100 -11.8 -4.90002 | opp_overlap 4040849, overlap 4040844 ATCGGACATTAAAAA GGGCGC CTAG GCGCCC TTTTCTTATCTCTTA TERM 3921 4040864 - 4040849 - T 100 -11.8 -4.80882 | opp_overlap 4040849 4040844 ATCGGACATTAAAAA GGGCGC CTAG GCGCCC TTTTCTTATCTCTTA Shew_3392 4042068 - 4040893 - | ornithine decarboxylase TERM 3922 4042148 - 4042165 + r 74 -4.1 -4.99861 | AGTAAACGCTATTTT TTCGTCG AGAT CAACGAA TTTTTATGCTTAATA Shew_3393 4042747 - 4042292 - | hypothetical protein Shew_3394 4042979 - 4043812 + | MscS mechanosensitive ion channel TERM 3923 4043871 - 4043843 - T 100 -13.8 -3.82202 | gap 1 TAGCGCCAAAGATAA GGCGGCGCCGGCC TAGA GGCC-GCGCTGCC ACTCCTGGCGCAGGG Shew_3395 4044733 - 4043855 - | radical SAM domain-containing protein TERM 3924 4044914 - 4044893 - H 86 -10.9 -4.11751 | gap 1 ATTAATCTTTTAAAA CTG-GCTGGC GGT GCCAGCACAG AAAGAAATATTGGCT Shew_3396 4044903 - 4045205 + | hypothetical protein TERM 3925 4045279 - 4045253 - T 93 -15.3 -3.08015 | opp_overlap 4045253, overlap 4045255 4045257 TTAATTACCCGAACA TAGAGGAGCAC GCCCT GTGCTCCTCTA TTTGCACGTCTCTCT TERM 3926 4045253 - 4045279 + T 100 -16 -3.60502 | opp_overlap 4045253 4045255 4045257 TTAATTACCCGAACA TAGAGGAGCACG CCC TGTGCTCCTCTA TTTGCACGTCTCTCT TERM 3927 4045277 - 4045255 - T 87 -13.5 -3.09557 | opp_overlap 4045253, overlap 4045253 4045257 AATTACCCGAACATA GAGGAGCAC GCCCT GTGCTCCTC TATTTGCACGTCTCT TERM 3928 4045275 - 4045257 - T 73 -10.3 -3.10245 | opp_overlap 4045253, overlap 4045255 4045253 TTACCCGAACATAGA GGAGCAC GCCCT GTGCTCC TCTATTTGCACGTCT Shew_3397 4045831 - 4045361 - | GCN5-related N-acetyltransferase TERM 3929 4045838 - 4045852 + H 95 -8.5 -5.1848 | CTCATTCATTAATTC CGGCG CCTAT CGCCG TTTTTTCAATTACTT Shew_3398 4046198 - 4046494 + | cytochrome c, class I TERM 3930 4046533 - 4046566 + F 73 -6.5 -4.30885 | opp_overlap 4046532, overlap 4046535 4046538 GCACTCTCCCAACAG GTCGCGCCCCGTCGC TCAG GTGACGCGGCCTGTC TTTTCCCTGTCTTTT TERM 3931 4046535 - 4046564 + F 71 -7.7 -3.73587 | opp_overlap 4046532, overlap 4046533 4046538 ACTCTCCCAACAGGT CGCGCCCCGTCGC TCAG GTGACGCGGCCTG TCTTTTCCCTGTCTT TERM 3932 4046538 - 4046561 + F 70 -10.2 -2.65483 | opp_overlap 4046532, overlap 4046535 4046533 CTCCCAACAGGTCGC GCCCCGTCGC TCAG GTGACGCGGC CTGTCTTTTCCCTGT TERM 3933 4046986 - 4046969 - g 91 -12.7 -4.05033 | CGCATCTCAGACAAA CAGGGCG AGCC CGCCCTG TGGACCATCTACAAA TERM 3934 4048891 - 4048874 - g 91 -9.1 -5.02074 | CCACCGCTGAAAAAA CTGGCGC GCAA ACGCCAG CAATACAAAGACCAA Shew_3399 4046792 - 4048933 + | FMN-binding domain-containing protein TERM 3935 4049100 - 4049056 - g 80 -14.2 -3.04263 | opp_overlap 4049053 AGTTTATGGGCAAGA CGGCCCTGCTGGGGGCGG GTGCAGTGG CCGCCCCCATGAGCGCCG CCATGTTCGCCTCGA Shew_3400 4048986 - 4050872 + | nitrous-oxide reductase TERM 3936 4050914 - 4050879 - f 100 -13.2 -4.43309 | opp_overlap 4050883, overlap 4050880 GAAGCCTAAGTAAAA TGCAGGCGTCTGATGC CCCC GCGTCAGGCGCCTGCC TTAACCCAGCGCTAG TERM 3937 4050913 - 4050880 - f 100 -16.7 -3.25262 | opp_overlap 4050883, overlap 4050879 AAGCCTAAGTAAAAT GCAGGCGTCTGATGC CCCC GCGTCAGGCGCCTGC CTTAACCCAGCGCTA TERM 3938 4050883 - 4050910 + F 93 -15.6 -2.52464 | opp_overlap 4050880 4050879 CCTAAGTAAAATGCA GGCGTCTGATGC CCCC GCGTCAGGCGCC TGCCTTAACCCAGCG TERM 3939 4051057 - 4051083 + G 73 -5.1 -4.58395 | opp_overlap 4051049 CCATAATGGCCTTGA GGCTTAGGCTA GCTCA TGGCCTGGGTC TTTTTCACCAGTGCA Shew_3401 4051047 - 4052420 + | periplasmic copper-binding TERM 3940 4052863 - 4052898 + G 70 -10.5 -3.23395 | overlap 4052861 4052863 GGGATGCGTCAGCGG C-TGGGGCTGGCCCAGG CCTT CCTCGGC-AGCCCCAAG TTGCTGCTGCTGGAT Shew_3402 4052425 - 4053393 + | ABC transporter-related protein TERM 3941 4053551 - 4053578 + G 85 -12 -3.96624 | ATCGCTGTCGTCCAC CATCGCCAGCCT GTCG AGCCTGGCGGTG TTTCTGATCCCGCTG Shew_3403 4053390 - 4054208 + | ABC-2 type transporter Shew_3404 4054208 - 4054729 + | NosL family protein Shew_3405 4056392 - 4054776 - | EmrB/QacA family drug resistance transporter Shew_3406 4057465 - 4056389 - | secretion protein HlyD family protein TERM 3942 4057791 - 4057773 - g 70 -9.6 -3.43264 | overlap 4057776 4057778 4057783 AAGCATCTATTACAA CAAGATCC AAC GGATCCTG ATGGATCTGCAGAGC Shew_3407 4057576 - 4058511 + | LysR family transcriptional regulator TERM 3943 4059294 - 4059277 - g 73 -5.6 -4.59773 | opp_overlap 4059276 GCTCAGTTCGAAAAA TTCCAG GCCGCA CTGGAA GATTGTGACGACGTA Shew_3408 4058620 - 4059345 + | hypothetical protein TERM 3944 4059425 - 4059459 + F 93 -10.1 -5.02476 | opp_overlap 4059426, overlap 4059426 GTCGAAATAAAACCA AGAGCGATTCGTCGA ACCCG TTGATGAATCGCTCC TTTTTTAGCCAATCT TERM 3945 4059458 - 4059426 - f 79 -9.2 -3.88331 | opp_overlap 4059426 4059425 TCGAAATAAAACCAA GAGCGATTCGTCGA ACCCG TTGATGAATCGCTC CTTTTTTAGCCAATC TERM 3946 4059426 - 4059458 + F 100 -13.6 -3.60762 | opp_overlap 4059426, overlap 4059425 TCGAAATAAAACCAA GAGCGATTCGTCGA ACCCG TTGATGAATCGCTC CTTTTTTAGCCAATC TERM 3947 4059507 - 4059522 + F 75 -9 -3.61356 | AAGTTTTTTGACTCT CGCCAA GGCC TTGGCG TTTAGAGTAAGTGCT TERM 3948 4060343 - 4060330 - g 72 -9.5 -3.62224 | ACAGCTGGTCAACAA CGCCG AAGT CGGCG CCATTCACGGCATGG Shew_3409 4059737 - 4060768 + | putative lipoprotein TERM 3949 4060845 - 4060816 - T 83 -12.3 -3.12083 | opp_overlap 4060822, overlap 4060822 CCAATATACAGAAAG CAAAAAGGCACTC TCAT GAGTGCCTTTTTT ATTGACCGAAGCTAA TERM 3950 4060822 - 4060839 + T 100 -11.3 -5.4505 | opp_overlap 4060816 4060822 TACAGAAAGCAAAAA GGCACTC TCAT GAGTGCC TTTTTTATTGACCGA TERM 3951 4060839 - 4060822 - T 100 -11.3 -5.07011 | opp_overlap 4060822, overlap 4060816 TACAGAAAGCAAAAA GGCACTC TCAT GAGTGCC TTTTTTATTGACCGA Shew_3410 4062288 - 4060864 - | permease zntR 4062768 - 4062292 - | zinc-responsive transcriptional regulator TERM 3952 4064641 - 4064592 - g 71 -12.1 -2.77148 | gap 1, opp_overlap 4064588 4064593 4064608 4064611, overlap 4064589 4064587 GCGATGAAGAGATCA TCGCA-GCCGCCGACGAGCATGGC ATG GCCATGGTCTTCACCGGCATGCGT CACTTCCGTCATTAA TERM 3953 4064593 - 4064640 + G 75 -13.4 -2.5602 | gap 1, opp_overlap 4064592 4064589 4064587, overlap 4064588 4064608 4064611 CGATGAAGAGATCAT CGCA-GCCGCCGACGAGCATGGC ATG GCCATGGTCTTCACCGGCATGCG TCACTTCCGTCATTA purH 4063067 - 4064656 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 3954 4064665 - 4064692 + F 80 -9.1 -4.13014 | gap 1, overlap 4064665 TCATTAATTTGCTTT C-GCGCCTGGGC CACAA GTCCGGGCGCCG TTTTAAGGATATAGC Shew_3413 4064708 - 4066009 + | phosphoribosylamine--glycine ligase TERM 3955 4066114 - 4066085 - f 87 -8.7 -4.46581 | gap 1, opp_overlap 4066085, overlap 4066075 TAAAATCGCATAAAA GCACCT-ATACCCC ATA AGAGTATTAGGTGC TTTTTTATACAACTC TERM 3956 4066085 - 4066114 + F 83 -5.8 -5.252 | gap 1, opp_overlap 4066085 4066075 TAAAATCGCATAAAA GCACCT-ATACCC CATAA GAGTATTAGGTGC TTTTTTATACAACTC Shew_3414 4066298 - 4069300 + | hypothetical protein TERM 3957 4069321 - 4069350 + T 93 -12.3 -3.44876 | opp_overlap 4069327, overlap 4069327 ACTTTACTCCTTACA CAAAAAGCCCAGT TTAG ACTGGGCTTTTTA TTGCTCTTCTGCTTT TERM 3958 4069327 - 4069344 + T 100 -11.3 -5.19251 | opp_overlap 4069327, overlap 4069321 CTCCTTACACAAAAA GCCCAGT TTAG ACTGGGC TTTTTATTGCTCTTC TERM 3959 4069344 - 4069327 - T 100 -11.3 -4.96848 | opp_overlap 4069321 4069327 CTCCTTACACAAAAA GCCCAGT TTAG ACTGGGC TTTTTATTGCTCTTC TERM 3960 4069424 - 4069442 + T 80 -11 -3.35798 | opp_overlap 4069414 TCAATGCCCTGAGGC GATCGCCT TGC GGGCGATC TTATCGATCAGGCCT Shew_3415 4070215 - 4069409 - | short chain dehydrogenase Shew_3416 4072878 - 4070305 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Shew_3417 4073181 - 4073903 + | hypothetical protein TERM 3961 4074180 - 4074143 - g 79 -9.8 -4.08216 | gap 1 TCATGCCTGGCAAAA CGGCGAGCC-CGCCAGC CTGGC GCTGGAGCAGCTGGCCG AGGGCGGCGATCAGT Shew_3418 4073913 - 4074641 + | hypothetical protein Shew_3419 4074739 - 4075467 + | two component transcriptional regulator TERM 3962 4076942 - 4076909 - g 78 -14 -2.54523 | gap 1, opp_overlap 4076875 GCAGAGTGCAACCGA TCGGGGCAGC-CGAT TCATG ATCGCACTGCCCCGA TATCGATGAGGTGGG Shew_3420 4075470 - 4076951 + | integral membrane sensor signal transduction histidine kinase Shew_3421 4077235 - 4076960 - | hypothetical protein TERM 3963 4077303 - 4077332 + r 74 -10.7 -2.76737 | opp_overlap 4077304, overlap 4077302 4077306 4077328 TTCACGGGCAAAAAA ATAGCCAGTCGAG TTGC CCCGACTGGCTAG CTTTCAAGCTTAATG TERM 3964 4077331 - 4077304 - R 100 -16.4 -5.42259 | opp_overlap 4077303 4077302 4077306 4077328 TCACGGGCAAAAAAA TAGCCAGTCGAG TTGC CCCGACTGGCTA GCTTTCAAGCTTAAT TERM 3965 4077306 - 4077329 + r 81 -12.4 -2.65279 | opp_overlap 4077304, overlap 4077303 4077302 4077328 ACGGGCAAAAAAATA GCCAGTCGAG TTGC CCCGACTGGC TAGCTTTCAAGCTTA Shew_3422 4078416 - 4077352 - | uroporphyrinogen decarboxylase TERM 3966 4078733 - 4078694 - H 70 -10 -2.60508 | opp_overlap 4078693 4078699 4078700, overlap 4078693 4078692 GAGCCCGCAAAAACT TTACTCGCCCAGCGATAG ATTT CTATCGCTGGGCATTTTA TTTCTGCCCCTCTCA TERM 3967 4078699 - 4078728 + H 100 -16.5 -4.99043 | opp_overlap 4078694 4078693 4078692, overlap 4078693 4078700 CGCAAAAACTTTACT CGCCCAGCGATAG ATTT CTATCGCTGGGCA TTTTATTTCTGCCCC TERM 3968 4078700 - 4078727 + H 100 -20 -3.58703 | opp_overlap 4078694 4078693 4078692, overlap 4078693 4078699 GCAAAAACTTTACTC GCCCAGCGATAG ATTT CTATCGCTGGGC ATTTTATTTCTGCCC Shew_3423 4078894 - 4079364 + | anti-RNA polymerase sigma 70 factor TERM 3969 4079433 - 4079452 + T 100 -13.6 -4.21936 | opp_overlap 4079433 CGCAGACATAAAAAA GGCCAGCT AATC AGCTGGCC TTTTCGCGTTATCAA TERM 3970 4079452 - 4079433 - T 100 -13.6 -5.4251 | opp_overlap 4079433 CGCAGACATAAAAAA GGCCAGCT AATC AGCTGGCC TTTTCGCGTTATCAA Shew_3424 4082071 - 4079474 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Shew_3425 4082485 - 4083156 + | 2-deoxyglucose-6-phosphatase TERM 3971 4083182 - 4083209 + T 77 -7 -4.51765 | opp_overlap 4083187, overlap 4083187 AGGGATTCAGACAAT AAAAAGCCCATC CTAG GATGGGCTTTCG TTTGTTTAGATTGTA TERM 3972 4083204 - 4083187 - T 100 -11.3 -5.24796 | opp_overlap 4083187 4083182 TTCAGACAATAAAAA GCCCATC CTAG GATGGGC TTTCGTTTGTTTAGA TERM 3973 4083187 - 4083204 + T 93 -11.3 -4.27211 | opp_overlap 4083187, overlap 4083182 TTCAGACAATAAAAA GCCCATC CTAG GATGGGC TTTCGTTTGTTTAGA Shew_3426 4085298 - 4083244 - | endothelin-converting protein 1 Shew_3427 4087643 - 4085430 - | patatin TERM 3974 4086298 - 4086316 + g 73 -12.4 -3.0371 | AGCTCGTTGCGCCAC TCGCCGCC ATA GGCGGTGA TATCTGTCATGGTAT Shew_3428 4092193 - 4087739 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TERM 3975 4092314 - 4092300 - R 100 -11.4 -6.11644 | opp_overlap 4092300 CCAGCCAAAAAAAAA GCGCTC AAT GAGCGC TTTTTCGGATTTCAG TERM 3976 4092300 - 4092314 + r 100 -11.4 -4.70879 | opp_overlap 4092300 CCAGCCAAAAAAAAA GCGCTC AAT GAGCGC TTTTTCGGATTTCAG Shew_3429 4093763 - 4092336 - | dihydrolipoamide dehydrogenase TERM 3977 4093909 - 4093889 - R 100 -14.1 -4.9138 | opp_overlap 4093889 AGGAGTTAAACAAAA GGCTACTCA TGG TGAGTAGCC TTCATCATTACAAAA TERM 3978 4093889 - 4093909 + r 95 -14.1 -3.27298 | opp_overlap 4093889 AGGAGTTAAACAAAA GGCTACTCA TGG TGAGTAGCC TTCATCATTACAAAA Shew_3430 4095869 - 4093917 - | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 3979 4095236 - 4095250 + g 71 -11.4 -3.21099 | TGGCAGCGGCCGCTG GCGCAG CCT CTGCGC TTGGTGCTGGAGCCG aceE 4098547 - 4095881 - | pyruvate dehydrogenase subunit E1 TERM 3980 4097112 - 4097143 + g 70 -11.8 -2.57132 | gap 1, opp_overlap 4097110, overlap 4097111 ATAGAGTCGAAGATC TTCAGTGAAGGCACT TCG AG-GTCTTCACTGAA CTTCTGACGGCGAGC TERM 3981 4098627 - 4098598 - R 83 -5.8 -5.30348 | opp_overlap 4098598, overlap 4098592 ATTGAATAATAAAAA GTGGCAGC-TAGAC CTAA GCCTACGC-GCCAC TCTTCAAACGGCGCA pdhR 4099369 - 4098617 - | transcriptional regulator PdhR Shew_3433 4100459 - 4099608 - | regulatory protein AmpE Shew_3434 4101076 - 4100522 - | N-acetyl-anhydromuranmyl-L-alanine amidase TERM 3982 4100792 - 4100776 - G 73 -9.4 -3.8901 | CTGCAAACGAGGAAA CGCCTG CGTGC CAGGCG CGATCATCACAGCTA TERM 3983 4101211 - 4101232 + H 77 -7.3 -4.33153 | opp_overlap 4101211 4101209 GCGTAGCGCTAAATA TCCCTGCTT TTTC AATCAGGGA TTTGTTACTATTAAC Shew_3435 4101353 - 4102234 + | nicotinate-nucleotide pyrophosphorylase TERM 3984 4102443 - 4102460 + F 71 -4.3 -4.63486 | opp_overlap 4102442 4102443, overlap 4102443 TAATTACGCTATAAC TTTTTTT ACAA AAAAAAA TTTTATTAGACAAAT TERM 3985 4102604 - 4102588 - f 85 -10.9 -3.79043 | TACCATGAAGGTAAA CCGACTT AGT AAGTCGG AAGCATTAATTATCG Shew_3436 4103142 - 4103495 + | methylation site containing protein TERM 3986 4103531 - 4103516 - T 86 -7.5 -5.10077 | opp_overlap 4103516 AAAGATCTGAAAAAA GGCCG CTAGCT CGGCC TTTTTTTTTACTGCG TERM 3987 4103516 - 4103531 + T 100 -7.5 -6.15828 | opp_overlap 4103516 AAAGATCTGAAAAAA GGCCG CTAGCT CGGCC TTTTTTTTTACTGCG TERM 3988 4103611 - 4103599 - T 70 -6.3 -4.17762 | TACTCTGCAAAATAA TTGCA TGA TGCAA AAATCTGCATAAAAC Shew_3437 4105033 - 4103663 - | O-antigen polymerase TERM 3989 4104251 - 4104235 - G 72 -3.8 -4.79223 | opp_overlap 4104235 TTACATTATCAAAAA GATAAT AAGGA ATTATC TTAATTAGTAACAAC TERM 3990 4104294 - 4104284 - G 71 -8.2 -3.94333 | CAGCAAGATACCAAA GGCC AAT GGCC GTAACACCTCATAAA Shew_3438 4105375 - 4107084 + | type IV-A pilus assembly ATPase PilB TERM 3991 4107372 - 4107357 - g 80 -5.4 -4.89063 | TGATCCAAAAATAAA GGCAAT GGAT ATCGCC ATGATCACACGCCAG Shew_3439 4107121 - 4108389 + | type II secretion system protein TERM 3992 4108464 - 4108479 + G 74 -3.2 -4.91778 | overlap 4108455 ATGGCTCAGTACCCT TTGCTG TTTG CCGCAA TTTCTTTTGTCTTTG TERM 3993 4108494 - 4108511 + G 74 -4.7 -4.7173 | ATTTCTTTTGTCTTT GCAGCCG TGAT TGGCAGC TTTTTAAATGTAGTC Shew_3440 4108428 - 4109339 + | prepilin peptidase Shew_3441 4109360 - 4109965 + | dephospho-CoA kinase TERM 3994 4110517 - 4110528 + G 72 -5.8 -4.37886 | overlap 4110514 4110512 4110511 TATAACCCTGCAACG GCCA CCGC TGGC TTTTATCAAGGGTCG Shew_3442 4109974 - 4110708 + | hypothetical protein Shew_3443 4110745 - 4110969 + | hypothetical protein Shew_3444 4110970 - 4111359 + | mutator MutT protein TERM 3995 4112225 - 4112247 + T 100 -17.8 -4.20981 | opp_overlap 4112225 TGTTAAACGAAAAAA TCCCCAGCAC AAG GTGCTGGGGA TTTATCGTTTATTAG TERM 3996 4112247 - 4112225 - T 100 -17.8 -5.37593 | opp_overlap 4112225 TGTTAAACGAAAAAA TCCCCAGCAC AAG GTGCTGGGGA TTTATCGTTTATTAG TERM 3997 4113600 - 4113611 + T 71 -4.4 -4.7254 | CATCTTGCGATTTTG CACA GTGC TGTG TTTTTGATAAACAGT TERM 3998 4114902 - 4114914 + T 82 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3999 4117436 - 4117446 + T 75 -4.6 -5.01732 | CGCTTCTCCCTGTCG GCGT CAA GCGC TTTTTTCAAAAGATT TERM 4000 4118778 - 4118800 + T 100 -12 -4.87807 | opp_overlap 4118778 TGTAGAAAGTAAAAA GCCCTAGCGT TTT AGGCTAGGGC TTTTTGCTATATTAG TERM 4001 4118800 - 4118778 - T 100 -12 -5.04601 | opp_overlap 4118778 TGTAGAAAGTAAAAA GCCCTAGCGT TTT AGGCTAGGGC TTTTTGCTATATTAG TERM 4002 4120437 - 4120448 + T 71 -4.4 -4.7254 | CATCTTGCGATTTTG CACA GTGC TGTG TTTTTGATAAACAGT TERM 4003 4121739 - 4121751 + T 82 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 4004 4122398 - 4122430 + T 75 -10.8 -2.88663 | opp_overlap 4122399, overlap 4122405 GAGCGGGCTTAAAAA AGCCAAAGATAAAT TCTGC ATTTATCTTTGGCA TCTCTAACCATAACT TERM 4005 4122429 - 4122399 - T 100 -14.3 -5.00884 | opp_overlap 4122398 4122405 AGCGGGCTTAAAAAA GCCAAAGATAAAT TCTGC ATTTATCTTTGGC ATCTCTAACCATAAC TERM 4006 4124940 - 4124968 + T 100 -13.3 -3.52652 | opp_overlap 4124946, overlap 4124946 GGAACCTCGAGGATC AAAAAAGCCATCC TAA GGATGGCTTTTTA TTATGCTTGGCTAAA TERM 4007 4124962 - 4124946 - T 100 -12.3 -5.1861 | opp_overlap 4124946 4124940 TCGAGGATCAAAAAA GCCATCC TAA GGATGGC TTTTTATTATGCTTG TERM 4008 4124946 - 4124962 + T 100 -12.3 -5.24416 | opp_overlap 4124946, overlap 4124940 TCGAGGATCAAAAAA GCCATCC TAA GGATGGC TTTTTATTATGCTTG Shew_3445 4127843 - 4125120 - | preprotein translocase subunit SecA TERM 4009 4126727 - 4126737 + g 79 -6.8 -4.68645 | overlap 4126723 GGAAGGTGATAGATG CCAG CGT CTGG TTTTCATTTTGAATA Shew_3446 4128801 - 4127902 - | peptidase M23B TERM 4010 4128849 - 4128837 - g 70 -3.3 -4.7373 | TTATGTTATGAAAAA GCCCC CGC AGGAC CTCAGTCAATTACTG TERM 4011 4128913 - 4128901 - g 71 -4.8 -4.58395 | overlap 4128910 TCTATCGCCGAAAAA GCAG AACTA CTGC TTCACCTGGATCACC TERM 4012 4129271 - 4129237 - g 100 -15.1 -4.62069 | overlap 4129243 TCCCTAGGCCAAAAA CTAAAACGGCTGGCT GCTTT AGCCAGCCGTTCAAG GCAATCCAAATAGGC TERM 4013 4129265 - 4129243 - g 100 -14.9 -4.77757 | overlap 4129237 GGCCAAAAACTAAAA CGGCTGGCT GCTTT AGCCAGCCG TTCAAGGCAATCCAA Shew_3447 4128829 - 4129284 + | hypothetical protein lpxC 4130208 - 4129288 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Shew_3449 4131562 - 4130387 - | cell division protein FtsZ Shew_3450 4132832 - 4131597 - | cell division protein FtsA Shew_3451 4133600 - 4132836 - | cell division protein FtsQ Shew_3452 4135198 - 4133744 - | UDP-N-acetylmuramate--alanine ligase Shew_3453 4136285 - 4135191 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 4014 4136308 - 4136320 + r 73 -9.1 -3.44844 | ACCTTACCTTGTACT GCCTG GAT CAGGC TTAATCTTCTCTCAT Shew_3454 4137500 - 4136286 - | cell division protein FtsW TERM 4015 4136914 - 4136902 - G 70 -3.3 -4.76802 | overlap 4136903 4136904 4136906 GCTAAAAACAACAAA CCGAC GGT GCCGA CAAACAACACCACCA Shew_3455 4138824 - 4137493 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 4016 4137560 - 4137542 - G 74 -7.4 -4.25283 | ACCTGGGCACGAAAA TCATCGCC CCT GGCCATGA AGTTGGCGTACATAT Shew_3456 4139913 - 4138831 - | phospho-N-acetylmuramoyl-pentapeptide-transferase Shew_3457 4141283 - 4139913 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase TERM 4017 4140320 - 4140310 - G 71 -6.8 -4.2704 | TCTATCAGCAAGAAA CGTC CCA GACG CGTCGGCTGCATACG Shew_3458 4142746 - 4141280 - | UDP-N-acetylmuramyl-tripeptide synthetase TERM 4018 4142095 - 4142077 - G 75 -11.6 -3.47184 | overlap 4142069 4142075 AACTGAATCTAAACA GGCGCTGC TTA GCCGCGCC ATAGGCATCCATAGA Shew_3459 4144482 - 4142746 - | peptidoglycan glycosyltransferase Shew_3460 4144793 - 4144479 - | cell division protein FtsL mraW 4145772 - 4144831 - | S-adenosyl-methyltransferase MraW TERM 4019 4145515 - 4145478 - G 72 -9.9 -3.7014 | gap 1, opp_overlap 4145478 CAAAGTCGAACAGAA TGCCGTCGATCT-TGCCT CTG AGGCCGAGATCGTCGACA TATTGGGCCAGCTGG Shew_3462 4146264 - 4145806 - | cell division protein MraZ Shew_3463 4146679 - 4147389 + | PepSY-associated TM helix domain-containing protein Shew_3464 4147386 - 4148513 + | ferredoxin Shew_3465 4148680 - 4148988 + | hypothetical protein Shew_3466 4150527 - 4149031 - | glycerol kinase Shew_3467 4151036 - 4150539 - | hypothetical protein TERM 4020 4151190 - 4151209 + r 82 -7.8 -4.5852 | opp_overlap 4151190, overlap 4151185 ATTCAGATAAAAAAA TGCCCCAC ATAG GTGAGGCA TTTTCGTTTAACTTA TERM 4021 4151209 - 4151190 - R 100 -10 -5.72616 | opp_overlap 4151190 4151185 ATTCAGATAAAAAAA TGCCCCAC ATAG GTGAGGCA TTTTCGTTTAACTTA Shew_3468 4152618 - 4151263 - | membrane protein involved in aromatic hydrocarbon degradation TERM 4022 4153042 - 4153067 + r 86 -13.3 -3.10344 | opp_overlap 4153042 TAATGTAAACAAAAA GCCGACCACAG CAAA CTGTGATCGGC TCTATTCGATAACCC TERM 4023 4153067 - 4153042 - R 100 -15.5 -5.33026 | opp_overlap 4153042 TAATGTAAACAAAAA GCCGACCACAG CAAA CTGTGATCGGC TCTATTCGATAACCC Shew_3469 4153787 - 4153182 - | isopropylmalate isomerase small subunit Shew_3470 4155197 - 4153797 - | isopropylmalate isomerase large subunit Shew_3471 4156291 - 4155197 - | 3-isopropylmalate dehydrogenase Shew_3472 4157918 - 4156347 - | 2-isopropylmalate synthase TERM 4024 4157349 - 4157361 + g 74 -7.7 -4.21194 | ATCGATATTCGGTAC CCTGT CGA ACAGG TTTTGAATGATGCCG TERM 4025 4157984 - 4158005 + H 91 -11.5 -3.93695 | opp_overlap 4157984 CCATAAACAAAAAAA CCCCGCGTT GTTG GGCGCGGGG TTTATGAATGATGGG TERM 4026 4158005 - 4157984 - H 100 -10.1 -6.02919 | opp_overlap 4157984 CCATAAACAAAAAAA CCCCGCG TTGTTGGG CGCGGGG TTTATGAATGATGGG TERM 4027 4159447 - 4159427 - g 73 -12.5 -2.61582 | opp_overlap 4159441, overlap 4159426 GAGCTGATGCAGAAG GCGATCGCC ATC GGCGAGCGC ACCAATCAGTTTGAC Shew_3473 4158437 - 4160185 + | response regulator receiver protein Shew_3474 4162087 - 4160255 - | ATP-dependent DNA helicase RecQ TERM 4028 4161091 - 4161074 - G 71 -7.7 -4.06786 | gap 1 ATCGAACAGCATAAA GGCCTCGG CAT CC-AGGCC ATCACGGCCGGCGCG TERM 4029 4161580 - 4161566 - G 75 -10 -3.74693 | GGGCACCCGAGGAAA CAGCTG CTT CAGCTG ACCAAGGGCCGCATA TERM 4030 4162126 - 4162142 + H 82 -12.3 -2.88999 | opp_overlap 4162129, overlap 4162129 GCCGCTTATTCTAAT CAAGCCG GCT CGGCTTG TCTCATCTATCCGGG Shew_3475 4162326 - 4162790 + | hypothetical protein Shew_3476 4162947 - 4163834 + | transporter DMT superfamily protein Shew_3477 4164344 - 4163805 - | hypothetical protein TERM 4031 4164507 - 4164489 - R 100 -12.4 -5.03994 | opp_overlap 4164487 4164489 TTGGACACACAAAAA GACCACCC CAA GGGTGGCC TCTTTCATCGGATGG TERM 4032 4164489 - 4164507 + r 77 -10.2 -3.4582 | opp_overlap 4164489, overlap 4164487 TTGGACACACAAAAA GACCACCC CAA GGGTGGCC TCTTTCATCGGATGG Shew_3478 4165853 - 4164531 - | N-acetylglutamate synthase TERM 4033 4166133 - 4166150 + r 87 -8.4 -4.56597 | opp_overlap 4166121 4166133 TTAGGGCAAAAAAAA GCCCCT GCTATG AGGGGC TTTTTCCAAAAAACG TERM 4034 4166150 - 4166133 - R 100 -8.4 -5.78622 | opp_overlap 4166133, overlap 4166121 TTAGGGCAAAAAAAA GCCCCT GCTATG AGGGGC TTTTTCCAAAAAACG TERM 4035 4166190 - 4166164 - R 74 -3.7 -5.00616 | opp_overlap 4166164 4166170 GCTTTTTCCAAAAAA CGTGAATCAAG AATTA CTTGATTTTCG CTTCTTTGTAGATAA rpmG 4166350 - 4166177 - | 50S ribosomal protein L33 TERM 4036 4166251 - 4166267 + g 74 -2.9 -4.88736 | TGATCTCCATCTTTT CAGGCAT GTT ACGCTTG TTTTTCTCAGTCGTG Shew_3480 4166593 - 4166357 - | ribosomal protein L28 TERM 4037 4166523 - 4166511 - G 81 -4.8 -5.09225 | opp_overlap 4166514, overlap 4166514 AGGTTAGGTAAAAAA CGAC GACGA GTCG CGTTCTTAGCGTGCG Shew_3481 4167418 - 4166717 - | DNA repair protein RadC TERM 4038 4166889 - 4166899 + g 79 -2.4 -5.24129 | TTGTGGCACACAATT ACCG CTG CGGC TTTTTTCTCAAGCAC TERM 4039 4167339 - 4167349 + g 84 -6.8 -4.96848 | opp_overlap 4167339, overlap 4167325 AGCTGAGCGACACCA CTGC GCA GCAG TTTTTCTCTGGGCCC TERM 4040 4168413 - 4168403 - g 70 -5.4 -4.48176 | GAGAAAATTAAGAAA TCTG CCA CAGA GATGTCACTTGCGCT Shew_3482 4167530 - 4168726 + | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 4041 4168996 - 4169019 + G 74 -11.8 -3.13403 | overlap 4168994 4169017 GGTCTTATCGACTCT GACTATCAGG GTCC CCTGATGGTC TCTTGCTGGAACCGC dut 4168723 - 4169181 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 4042 4169253 - 4169284 + F 72 -10.2 -2.8664 | gap 1, opp_overlap 4169254 4169256, overlap 4169246 4169256 GCATAGAATAATTAG AGAGTC-ATGGGCAG CGC CTGCCCATCGGCTCC TGTAGTAATTAAGTA TERM 4043 4169283 - 4169254 - f 79 -11.5 -3.05514 | gap 1, opp_overlap 4169253 4169246 4169256, overlap 4169256 CATAGAATAATTAGA GAGTC-ATGGGCAG CGC CTGCCCATCGGCTC CTGTAGTAATTAAGT TERM 4044 4169256 - 4169281 + F 70 -10.5 -2.68487 | gap 1, opp_overlap 4169254 4169256, overlap 4169253 4169246 TAGAATAATTAGAGA GTC-ATGGGCAG CGC CTGCCCATCGGC TCCTGTAGTAATTAA slmA 4169312 - 4169905 + | nucleoid occlusion protein TERM 4045 4169920 - 4169950 + F 75 -5.3 -4.82901 | opp_overlap 4169922, overlap 4169922 ACTAATATCAATAAA AACAGCGACCTGT AATAC ACTGGTCGCCGTG TTTTTCTAGACAAAA TERM 4046 4169922 - 4169948 + F 74 -7.9 -4.03995 | opp_overlap 4169922, overlap 4169920 TAATATCAATAAAAA CAGCGACCTGT AATAC ACTGGTCGCCG TGTTTTTCTAGACAA TERM 4047 4169948 - 4169922 - f 100 -10.8 -5.19251 | opp_overlap 4169922 4169920 TAATATCAATAAAAA CAGCGACCTGTA ATA CACTGGTCGCCG TGTTTTTCTAGACAA Shew_3485 4170055 - 4172019 + | peptidase S9 prolyl oligopeptidase TERM 4048 4172058 - 4172040 - f 100 -13.2 -4.21827 | opp_overlap 4172040 TTAAATACCCCAAAA GCCGATTG CCA CAATCGGC TTTTTTGTTAATCCC TERM 4049 4172040 - 4172058 + F 100 -13.2 -5.5112 | opp_overlap 4172040 TTAAATACCCCAAAA GCCGATTG CCA CAATCGGC TTTTTTGTTAATCCC folE 4172245 - 4172889 + | GTP cyclohydrolase I TERM 4050 4172948 - 4172919 - T 83 -12.3 -3.06183 | opp_overlap 4172926, overlap 4172926 GCGAGCTCCACTCAA TAAAAAACGCTGC CTAG GCAGCGTTTTTTT GTTTCACGACAATTG TERM 4051 4172926 - 4172941 + T 100 -10.4 -5.95539 | opp_overlap 4172919 4172926 CCACTCAATAAAAAA CGCTGC CTAG GCAGCG TTTTTTTGTTTCACG TERM 4052 4172941 - 4172926 - T 100 -10.4 -5.4833 | opp_overlap 4172926, overlap 4172919 CCACTCAATAAAAAA CGCTGC CTAG GCAGCG TTTTTTTGTTTCACG pyrE 4173612 - 4172971 - | orotate phosphoribosyltransferase TERM 4053 4173678 - 4173663 - R 100 -10.4 -5.47218 | TTCGATTTAAAAAAA GGACCC CGTA GGGTCC TGATCAAAAAATAAT Shew_3488 4174409 - 4173696 - | ribonuclease PH Shew_3489 4174591 - 4175454 + | hypothetical protein TERM 4054 4175496 - 4175471 - f 88 -12 -3.45634 | opp_overlap 4175471, overlap 4175466 CTCAATAAAATGCAA GCTCTAGCTT TATTCC AAGCTAGAGC TTTTCTCCATTCCCT TERM 4055 4175471 - 4175496 + F 100 -12 -4.47551 | opp_overlap 4175471 4175466 CTCAATAAAATGCAA GCTCTAGCTT TATTCC AAGCTAGAGC TTTTCTCCATTCCCT Shew_3490 4175634 - 4175864 + | XRE family transcriptional regulator Shew_3491 4175857 - 4177812 + | hypothetical protein Shew_3492 4177949 - 4178560 + | paraquat-inducible protein A TERM 4056 4178631 - 4178661 + T 80 -8.4 -4.23213 | gap 1, opp_overlap 4178631, overlap 4178633 TAACGCAATAAAAAA GCCCCCTTATTGT TATAAC GCAATA-GGGGGC TTTGTTCGATATAGG TERM 4057 4178661 - 4178631 - T 100 -7.7 -5.5074 | gap 1, opp_overlap 4178631 4178633 TAACGCAATAAAAAA GCCCCCTTATTG TTATAACG CAATA-GGGGGC TTTGTTCGATATAGG Shew_3493 4179967 - 4178681 - | acetyl-CoA hydrolase/transferase TERM 4058 4179734 - 4179696 - G 72 -10.3 -3.50219 | gap 2, overlap 4179697 AAGATGGGCACATAA TC-GGCGTCCC-CCTGCTG CAG CAGCAGGCGGGTCGGCAGA CCACCGAAGAAACAG TERM 4059 4179732 - 4179697 - G 70 -11.8 -2.69649 | gap 1, overlap 4179696 AGATGGGCACATAAT CGGCGTCCC-CCTGCTG CAG CAGCAGGCGGGTCGGCA GACCACCGAAGAAAC TERM 4060 4180118 - 4180135 + r 100 -14.1 -3.86524 | opp_overlap 4180100 4180118 GATGGCCACAAAAAA GGGGGCC CAAC GGCCCCC TTTATCACGCACTAT TERM 4061 4180135 - 4180118 - R 100 -14.1 -5.252 | opp_overlap 4180118, overlap 4180100 GATGGCCACAAAAAA GGGGGCC CAAC GGCCCCC TTTATCACGCACTAT Shew_3494 4181211 - 4180147 - | aminoglycoside phosphotransferase TERM 4062 4181180 - 4181195 + g 70 -10.4 -3.33492 | opp_overlap 4181176 4181177, overlap 4181178 GTTACGCCAAAGTGC GGCAGC ACCT GCTGCC TTATAAAATCAATCA Shew_3495 4182148 - 4181204 - | hypothetical protein TERM 4063 4181477 - 4181450 - G 71 -11.2 -3.0806 | opp_overlap 4181448 4181447, overlap 4181397 4181396 4181441 GGTAAAGCCCCAACA GGTCATCGAGGC CATC GCCTCGAGGGCC AAATTGCTCTGTCGT TERM 4064 4182158 - 4182172 + r 79 -11.4 -3.08679 | opp_overlap 4182153 4182158 CGACATCTAACCACA CGAGCC AAT GGCTCG TCTTAAATAAGAAAG TERM 4065 4182172 - 4182158 - R 78 -11.4 -2.93164 | opp_overlap 4182158, overlap 4182153 CGACATCTAACCACA CGAGCC AAT GGCTCG TCTTAAATAAGAAAG Shew_3496 4183430 - 4182237 - | hypothetical protein Shew_3497 4183670 - 4184293 + | guanylate kinase rpoZ 4184353 - 4184634 + | DNA-directed RNA polymerase subunit omega Shew_3499 4184648 - 4186753 + | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase Shew_3500 4186788 - 4187171 + | putative endoribonuclease L-PSP TERM 4066 4187187 - 4187210 + F 100 -16.8 -3.72592 | opp_overlap 4187191, overlap 4187191 GCTCTAAGTTGACAC CAAAGGGCGC TGCG GCGCCCTTTG TTCTTGATAAACATT TERM 4067 4187206 - 4187191 - f 93 -11.8 -3.84712 | opp_overlap 4187191 4187187 TAAGTTGACACCAAA GGGCGC TGCG GCGCCC TTTGTTCTTGATAAA TERM 4068 4187191 - 4187206 + F 100 -11.8 -4.48713 | opp_overlap 4187191, overlap 4187187 TAAGTTGACACCAAA GGGCGC TGCG GCGCCC TTTGTTCTTGATAAA Shew_3501 4187240 - 4187944 + | tRNA guanosine-2'-O-methyltransferase Shew_3502 4188286 - 4189941 + | AMP-dependent synthetase and ligase TERM 4069 4189998 - 4189983 - f 91 -10.4 -4.71382 | opp_overlap 4189983 ACAATGACCTAAAAA CACGCC ATCT GGCGTG TTTTTTATGGGGCAA TERM 4070 4189983 - 4189998 + F 100 -10.4 -5.24129 | opp_overlap 4189983 ACAATGACCTAAAAA CACGCC ATCT GGCGTG TTTTTTATGGGGCAA Shew_3503 4190118 - 4191050 + | CaCA family Na(+)/Ca(+) antiporter Shew_3504 4191250 - 4191915 + | TPR repeat-containing protein Shew_3505 4192016 - 4193107 + | integral membrane sensor signal transduction histidine kinase Shew_3506 4193115 - 4193711 + | two component LuxR family transcriptional regulator Shew_3507 4193856 - 4195931 + | ATP-dependent DNA helicase RecG Shew_3508 4196058 - 4196930 + | hypothetical protein Shew_3509 4197123 - 4197857 + | hypothetical protein TERM 4071 4198000 - 4198044 + G 95 -14.9 -3.80114 | overlap 4198003 TTCTGGCCCGGCAGC CAGCAGGTGCGCATCGCCCGG GTG CAGCGCGCTGTGCACCTGATG TTTCGTGGCTTCGTG TERM 4072 4198003 - 4198041 + G 80 -15.2 -2.68381 | overlap 4198000 TGGCCCGGCAGCCAG CAGGTGCGCATCGCCCGG GTG CAGCGCGCTGTGCACCTG ATGTTTCGTGGCTTC Shew_3510 4197850 - 4198671 + | phospholipid/glycerol acyltransferase Shew_3511 4198649 - 4198903 + | acyl carrier protein, putative Shew_3512 4198912 - 4199160 + | acyl carrier protein Shew_3513 4199160 - 4199708 + | hypothetical protein TERM 4073 4200583 - 4200571 - g 71 -9.1 -3.84406 | TCGTCAGCAGAACAA CCAGC AGA GCTGG CGCGCCTTTGCCACC Shew_3514 4199705 - 4201066 + | hypothetical protein Shew_3515 4201059 - 4201430 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ Shew_3516 4201430 - 4203148 + | glycosyl transferase family protein Shew_3517 4203149 - 4204711 + | histidine ammonia-lyase Shew_3518 4204722 - 4205156 + | thioesterase superfamily protein Shew_3519 4205153 - 4205926 + | outer membrane lipoprotein carrier protein LolA Shew_3520 4205923 - 4208448 + | hypothetical protein TERM 4074 4208937 - 4208953 + G 72 -10.1 -3.70417 | CTGAGCGCCGACTAC CTGCTGG ATG CCAGCGG TTTCGGTCGTGTGCT TERM 4075 4209060 - 4209044 - g 72 -9.5 -3.70446 | CCATATCCAAGACAA TATCGAC AGC GTCGATA TGGGTGACTATCACT Shew_3521 4208445 - 4209719 + | tryptophan halogenase Shew_3522 4209710 - 4210282 + | hypothetical protein Shew_3523 4210315 - 4211520 + | 3-oxoacyl-(acyl carrier protein) synthase I Shew_3524 4211520 - 4212113 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ fabG 4212110 - 4212835 + | 3-ketoacyl-(acyl-carrier-protein) reductase Shew_3526 4212835 - 4214076 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 4076 4214143 - 4214088 - f 100 -12.7 -4.011 | opp_overlap 4214138, overlap 4214085 4214091 CTAACATCGAAACAA CCA-CCACGGATGATCGCGATCGAGTC ATAA GACTC-ATCGCGGTCGTCGGCGGCTGG CACAGGCTTTGCTGA TERM 4077 4214139 - 4214091 - f 86 -13.2 -3.04231 | gap 1, opp_overlap 4214138, overlap 4214085 4214088 ACATCGAAACAACCA CCACGGATGATCGCGATCGAGTC ATAA GACTC-ATCGCGGTCGTCGGCGG CTGGCACAGGCTTTG Shew_3527 4214194 - 4214649 + | GCN5-related N-acetyltransferase Shew_3528 4214793 - 4215131 + | rhodanese domain-containing protein TERM 4078 4215348 - 4215330 - T 100 -14.6 -5.95539 | CGCTAAATAAAAAAA GGCGCTCA AAC TGAGCGCC CTAACCTAGAGATGG Shew_3529 4216006 - 4215413 - | azoreductase Shew_3530 4216330 - 4218753 + | glycerol-3-phosphate acyltransferase TERM 4079 4219775 - 4219790 + G 76 -5.4 -4.73388 | overlap 4219783 AACTGTGTTAGGTCT GCTGTT CCCC AACGGC TTTTTGATCGCCATT Shew_3531 4218753 - 4220009 + | aromatic amino acid transporter TERM 4080 4220061 - 4220033 - T 100 -16.1 -2.71731 | opp_overlap 4220033 4220039, overlap 4220039 GTTATCTCTTAAGCA GAAAAAGGCGCTC GAT GGGCGCCTTTTTC TTTATTAAAGTCACA TERM 4081 4220033 - 4220061 + T 100 -18.3 -4.1822 | opp_overlap 4220033 4220039, overlap 4220039 GTTATCTCTTAAGCA GAAAAAGGCGCTC GAT GGGCGCCTTTTTC TTTATTAAAGTCACA TERM 4082 4220055 - 4220039 - T 93 -9.3 -4.98255 | opp_overlap 4220033 4220039, overlap 4220033 TCTTAAGCAGAAAAA GGCGCTC GAT GGGCGCC TTTTTCTTTATTAAA TERM 4083 4220039 - 4220055 + T 100 -11.5 -5.47159 | opp_overlap 4220039 4220033, overlap 4220033 TCTTAAGCAGAAAAA GGCGCTC GAT GGGCGCC TTTTTCTTTATTAAA Shew_3532 4220492 - 4220079 - | globin Shew_3533 4220653 - 4221432 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 4084 4221674 - 4221659 - T 73 -10.4 -3.09116 | overlap 4221656 4221670 CTGATACAGAAACCA CTGCCG ACAA CGGCAG CACCAAGGCTAGCCA TERM 4085 4221766 - 4221783 + T 100 -11.3 -5.96219 | opp_overlap 4221766 CCAGATAGAAAAAAA GCACTGC GATT GCAGTGC TTTTTTTTGTACCTA TERM 4086 4221783 - 4221766 - T 100 -11.3 -5.76633 | opp_overlap 4221766 CCAGATAGAAAAAAA GCACTGC GATT GCAGTGC TTTTTTTTGTACCTA Shew_3534 4224960 - 4221817 - | CzcA family heavy metal efflux protein TERM 4087 4221908 - 4221932 + g 79 -3.5 -5.09225 | gap 1, opp_overlap 4221894, overlap 4221909 AGCGGCGCTGTGATC ATGCCGC-CC ACCATA GGCGCGGCAA TTTTTTGCATCACAT Shew_3535 4226558 - 4224969 - | RND family efflux transporter MFP subunit Shew_3536 4227115 - 4226582 - | hypothetical protein Shew_3537 4227792 - 4227385 - | hypothetical protein Shew_3538 4228335 - 4227898 - | hypothetical protein Shew_3539 4228978 - 4228454 - | hypothetical protein Shew_3540 4229319 - 4229882 + | NapC/NirT cytochrome c domain-containing protein TERM 4088 4229913 - 4229929 + T 100 -12.3 -5.4251 | opp_overlap 4229913 GCTAGTTAGTAAAAA GCCTCAC ACT GTGAGGC TTTTTTGTATATGAC TERM 4089 4229929 - 4229913 - T 100 -12.3 -4.7497 | opp_overlap 4229913 GCTAGTTAGTAAAAA GCCTCAC ACT GTGAGGC TTTTTTGTATATGAC Shew_3541 4230499 - 4230029 - | thioesterase domain-containing protein Shew_3542 4230939 - 4230502 - | D-tyrosyl-tRNA deacylase Shew_3543 4231532 - 4230969 - | hypothetical protein Shew_3544 4232631 - 4231681 - | alpha/beta hydrolase fold rbn 4233485 - 4232628 - | ribonuclease BN TERM 4090 4232859 - 4232849 - G 73 -8.2 -4.03413 | opp_overlap 4232849 ACTCGGTGAGATAAA GGGC AAA GCCC TTCTTACCCAGCTCA Shew_3546 4233641 - 4233862 + | hypothetical protein Shew_3547 4233887 - 4234537 + | hypothetical protein TERM 4091 4234547 - 4234566 + F 100 -12.2 -5.07652 | opp_overlap 4234547 AAGTAACGCCCTAAA GCCCTAAC CCTG GTTAGGGC TTTTCTTTTACCGCA TERM 4092 4234566 - 4234547 - f 89 -12.2 -3.58305 | opp_overlap 4234547 AAGTAACGCCCTAAA GCCCTAAC CCTG GTTAGGGC TTTTCTTTTACCGCA Shew_3548 4234838 - 4235455 + | hypothetical protein TERM 4093 4235467 - 4235488 + F 100 -12.3 -5.24531 | ATAACCTCTCCCTTT GGCTGGCAC ACGA GTGTCAGCC TTTTTTATCACCGCT Shew_3549 4235678 - 4236892 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shew_3550 4238753 - 4237977 - | AraC family transcriptional regulator Shew_3551 4238853 - 4239992 + | Bcr/CflA subfamily drug resistance transporter Shew_3552 4240694 - 4241707 + | transposase IS116/IS110/IS902 family protein TERM 4094 4242230 - 4242255 + T 83 -11.1 -3.62096 | opp_overlap 4242231, overlap 4242231 CGCCAGATACAAAAA ACCCCGGCCAT CTGC ATGGTCGGGGC TTTGGGCTAATCGAC TERM 4095 4242231 - 4242254 + T 89 -14.6 -2.77043 | opp_overlap 4242231, overlap 4242230 GCCAGATACAAAAAA CCCCGGCCAT CTGC ATGGTCGGGG CTTTGGGCTAATCGA TERM 4096 4242254 - 4242231 - T 100 -12.4 -5.4251 | opp_overlap 4242231 4242230 GCCAGATACAAAAAA CCCCGGCCAT CTGC ATGGTCGGGG CTTTGGGCTAATCGA Shew_3553 4244118 - 4242295 - | GTP-binding protein TypA TERM 4097 4244166 - 4244145 - H 74 -3.1 -5.1101 | gap 1 TTACCATCGAAAAAA TAGGG-TATT GAT AACAGCCCTA ATAATAGCTGTTGCA glnA 4244487 - 4245896 + | glutamine synthetase TERM 4098 4245932 - 4245949 + F 100 -9.8 -5.33866 | opp_overlap 4245932 TTAGTGCTCAAAGAA GCCGCC ACTTAA GGCGGC TTTTTTATGGCTTTC TERM 4099 4245949 - 4245932 - f 81 -9.8 -3.91716 | opp_overlap 4245932 TTAGTGCTCAAAGAA GCCGCC ACTTAA GGCGGC TTTTTTATGGCTTTC TERM 4100 4246130 - 4246113 - f 77 -9.8 -3.62046 | opp_overlap 4246113 TTAGTGCTCGAAGAA GCCGCC ACTTAA GGCGGC TTTTTTATGCCCTTT TERM 4101 4246113 - 4246130 + F 100 -9.8 -5.28826 | opp_overlap 4246113 TTAGTGCTCGAAGAA GCCGCC ACTTAA GGCGGC TTTTTTATGCCCTTT TERM 4102 4246670 - 4246659 - g 77 -7.2 -4.36914 | CTTCGTGTTAGAAAA CGGC CGTG GCCG TAGCAATCAGGACAC Shew_3555 4246258 - 4247082 + | hypothetical protein TERM 4103 4247157 - 4247187 + T 81 -12.7 -2.55585 | opp_overlap 4247163, overlap 4247163 GCTCCCCCTTAGATA AAAAAAGCCAGGC ACTCG GCCTGGCTTTTTG CTATCTGTTTTACGG TERM 4104 4247163 - 4247181 + T 100 -11.7 -4.87037 | opp_overlap 4247163, overlap 4247157 CCTTAGATAAAAAAA GCCAGGC ACTCG GCCTGGC TTTTTGCTATCTGTT TERM 4105 4247181 - 4247163 - T 100 -11.7 -5.71712 | opp_overlap 4247163 4247157 CCTTAGATAAAAAAA GCCAGGC ACTCG GCCTGGC TTTTTGCTATCTGTT Shew_3556 4248363 - 4247251 - | aminotransferase, class V Shew_3557 4249539 - 4248367 - | hypothetical protein TERM 4106 4248930 - 4248913 - G 86 -6.3 -5.0133 | gap 1, opp_overlap 4248927 4248929 CACGCTGTTAAAAAA CGCCT-GA GTG TCGAGGCG CTCGAATAGCGTCTG Shew_3558 4249727 - 4250188 + | AsnC family transcriptional regulator Shew_3559 4250249 - 4250797 + | hypothetical protein TERM 4107 4251373 - 4251352 - g 70 -2.9 -4.82667 | gap 1, opp_overlap 4251355, overlap 4251353 CCATGAGATCAAAAA CCCCCTG-GG CGG CCTCAGAGGC GCGGCCCAGCTGCTG Shew_3560 4250924 - 4251979 + | signal transduction histidine kinase, nitrogen specific, NtrB TERM 4108 4253225 - 4253187 - g 88 -16.6 -3.20382 | GCTGACACCCAGCAA CAGCCACGACAGCTCGCC CCA GGCGGGCAGCGGTGGCTG GCAGGAGGCTCTGAC Shew_3561 4252021 - 4253430 + | nitrogen metabolism transcriptional regulator, NtrC, Fis family TERM 4109 4253458 - 4253437 - f 100 -15.9 -3.66999 | opp_overlap 4253437 ATGGATTGAGTGAAA GCACCCAGC CTAG GCTGGGTGC TTTGGCGCCTCTTCC TERM 4110 4253437 - 4253458 + F 100 -15.9 -3.57615 | opp_overlap 4253437 ATGGATTGAGTGAAA GCACCCAGC CTAG GCTGGGTGC TTTGGCGCCTCTTCC Shew_3562 4253687 - 4254577 + | LysR family transcriptional regulator TERM 4111 4254749 - 4254776 + F 77 -3.4 -5.27335 | gap 1, opp_overlap 4254736 4254735, overlap 4254751 ACGCGGGCCATGGCC GCTGACGCACC ATAATTA GGTGCG-CACC TTTTTGTTTAAAACA TERM 4112 4254879 - 4254905 + F 93 -15.2 -3.03028 | opp_overlap 4254881, overlap 4254870 4254881 GTTAGTTTCCCTTAA GAGGTCTGACGT CCG ACGTCTGACCTC TGTGTCTGAATATTT TERM 4113 4254903 - 4254881 - f 81 -12 -3.01924 | opp_overlap 4254879 4254870 4254881 TAGTTTCCCTTAAGA GGTCTGACGT CCG ACGTCTGACC TCTGTGTCTGAATAT TERM 4114 4254881 - 4254903 + F 81 -12 -3.06261 | opp_overlap 4254881, overlap 4254879 4254870 TAGTTTCCCTTAAGA GGTCTGACGT CCG ACGTCTGACC TCTGTGTCTGAATAT Shew_3563 4255044 - 4255901 + | hypothetical protein Shew_3564 4255912 - 4257198 + | hypothetical protein TERM 4115 4257251 - 4257212 - T 100 -13.6 -4.1721 | opp_overlap 4257218, overlap 4257218 AGCTATATGCTAAAA GCGAAAGCGCCCGCTATG GTCA CATAGCGGGCGCTTTTTT ATTTTCTATTTAACG TERM 4116 4257245 - 4257218 - T 100 -21.4 -3.93061 | opp_overlap 4257218, overlap 4257212 ATGCTAAAAGCGAAA GCGCCCGCTATG GTCA CATAGCGGGCGC TTTTTTATTTTCTAT TERM 4117 4257218 - 4257245 + T 100 -21.4 -5.8901 | opp_overlap 4257212 4257218 ATGCTAAAAGCGAAA GCGCCCGCTATG GTCA CATAGCGGGCGC TTTTTTATTTTCTAT Shew_3565 4260379 - 4257269 - | acriflavin resistance protein TERM 4118 4259357 - 4259345 - G 78 -4.8 -4.87665 | overlap 4259348 GCGCAGGGAGAAAAA CAGC CACAT GCTG AGGAAGACCAGGATG Shew_3566 4261683 - 4260376 - | RND family efflux transporter MFP subunit Shew_3567 4262329 - 4261676 - | TetR family transcriptional regulator TERM 4119 4262350 - 4262335 - R 83 -7.6 -4.82901 | opp_overlap 4262335 CTTCTGCCATAAAAA TTCCTC AGTA GAGGAA TTAATACTAGAAGAA Shew_3568 4263332 - 4262463 - | cation diffusion facilitator family transporter Shew_3569 4263841 - 4263398 - | protein of unknown function, Spy-related Shew_3570 4264116 - 4264799 + | two component transcriptional regulator TERM 4120 4264867 - 4264837 - g 71 -11.1 -3.15544 | CCGCATCTTCATCAA GCTGCTGCTGAGC TTCTG GCTCTGTAGCAGC CTGATCATCGCCATC TERM 4121 4265739 - 4265722 - g 72 -9.9 -3.58864 | overlap 4265720 TCATGAGCACAAACA TCGGCTA TCGC TAGCCGA GACCCTGGGCCAGGT Shew_3571 4264799 - 4266166 + | integral membrane sensor signal transduction histidine kinase TERM 4122 4266213 - 4266228 + T 87 -10.4 -4.38927 | opp_overlap 4266213 AGCAGGCAAAAAAAA GTGGCC AAAT GGCCAC TTTGTTATCTGAGAG TERM 4123 4266228 - 4266213 - T 100 -10.4 -5.82316 | opp_overlap 4266213 AGCAGGCAAAAAAAA GTGGCC AAAT GGCCAC TTTGTTATCTGAGAG Shew_3572 4267230 - 4266250 - | alcohol dehydrogenase TERM 4124 4266804 - 4266778 - G 81 -14.4 -3.14931 | GGCACCTGTCACTAA GACGTCACCCTG CTC CGGGGTGACGCC GGCCTGTTGCAGCGC Shew_3573 4269109 - 4267334 - | Fis family GAF modulated sigma54 specific transcriptional regulator TERM 4125 4267984 - 4267973 - G 77 -7.2 -4.40003 | overlap 4267975 GTCGAGAAACAGAAA GCCG CCAT CGGC CTGACGTATCTTGCC Shew_3574 4269448 - 4270968 + | aldehyde dehydrogenase TERM 4126 4271026 - 4270987 - T 100 -22.4 -4.07885 | gap 1, opp_overlap 4270988 4270990 4271015 4271019, overlap 4270990 4270992 CACTCTCCGTTAAAA GCATAGAGCCTGCCGGGAC ACA ATCCCGGCAGGCTCTAT-C TTTTCATAAAGATAC TERM 4127 4270988 - 4271026 + T 100 -21.9 -4.26076 | opp_overlap 4270987 4270990 4270992, overlap 4270990 4271015 4271019 ACTCTCCGTTAAAAG CATAGAGCCTGCCGGGA CACAA TCCCGGCAGGCTCTATC TTTTCATAAAGATAC TERM 4128 4271024 - 4270990 - T 100 -25.2 -3.08032 | opp_overlap 4270990 4270988 4271015 4271019, overlap 4270987 4270992 TCTCCGTTAAAAGCA TAGAGCCTGCCGGGAC ACA ATCCCGGCAGGCTCTA TCTTTTCATAAAGAT TERM 4129 4270990 - 4271024 + T 100 -24.5 -3.7331 | opp_overlap 4270987 4270990 4270992, overlap 4270988 4271015 4271019 TCTCCGTTAAAAGCA TAGAGCCTGCCGGGA CACAA TCCCGGCAGGCTCTA TCTTTTCATAAAGAT TERM 4130 4271022 - 4270992 - T 100 -23.4 -3.09823 | opp_overlap 4270990 4270988 4271015 4271019, overlap 4270990 4270987 TCCGTTAAAAGCATA GAGCCTGCCGGGAC ACA ATCCCGGCAGGCTC TATCTTTTCATAAAG TERM 4131 4271062 - 4271042 - T 70 -10.5 -2.59797 | opp_overlap 4271019 4271015 4271057, overlap 4271041 4271039 TTTTCATAAAGATAC CGCTAGCTT AGT AAGCTAGCA TCAAACTGATTTTAG TERM 4132 4271403 - 4271385 - T 72 -3.1 -4.98128 | ATAACTAAAAATAAA GGCTATT ACCCA AAAAGCC ATTAAACCTGTGAAT Shew_3575 4272143 - 4271694 - | hypothetical protein TERM 4133 4271972 - 4271988 + g 73 -5.1 -4.63932 | CTTGGGCGACATAGC TGTACCT TTC AGGTTCA TTTTGTTGCCAAATC TERM 4134 4273494 - 4273484 - R 71 -8.2 -3.76224 | overlap 4273485 GTTTCAGGGATGAAA CCGC AGA GCGG CCAGGGATGGCGCAC TERM 4135 4273868 - 4273856 - R 73 -9.1 -3.48395 | opp_overlap 4273858 AGTGCTTGCACATAA GCCTG CCG CAGGC AATTGATGAAGGTGA Shew_3576 4274614 - 4273940 - | cysteine dioxygenase type I Shew_3577 4274919 - 4275383 + | RNA methyltransferase Shew_3578 4275909 - 4275400 - | hypothetical protein Shew_3579 4276444 - 4275893 - | hypothetical protein TERM 4136 4276614 - 4276589 - R 100 -12.5 -5.28176 | opp_overlap 4276589 TTGACCGATAAAAAA GGCCCGCCAGC GTTA GCCGACGAGCC TTTATGATTTAGCCT Shew_3580 4278104 - 4276656 - | peptidase M16 domain-containing protein Shew_3581 4279486 - 4278101 - | peptidase M16 domain-containing protein TERM 4137 4280141 - 4280155 + G 70 -11.4 -3.01001 | opp_overlap 4280130 GAGATTGAGGGAGGC GCCCTG AAT CAGGGC TATCGTTTACAGGTC Shew_3582 4279646 - 4280356 + | hypothetical protein Shew_3583 4281052 - 4280417 - | methyltransferase type 12 Shew_3584 4281411 - 4281064 - | hypothetical protein TERM 4138 4281238 - 4281253 + g 71 -8.2 -3.9398 | overlap 4281247 CTGCTCTCTCGCCTG GGTGGC GTTG GCCGCC TTTCTGGCCTTCTCC Shew_3585 4281680 - 4283785 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Shew_3586 4284575 - 4283973 - | DTW domain-containing protein Shew_3587 4284800 - 4285753 + | hypothetical protein TERM 4139 4285797 - 4285771 - T 100 -10.3 -5.42259 | gap 1 TCAGCCCCAAAAAAA GCCTGCATTGAG GTCA CT-AATGCAGGC TAAAAGGGTGTTGCT Shew_3588 4287035 - 4285833 - | Bcr/CflA subfamily drug resistance transporter Shew_3589 4287146 - 4288138 + | LysR family transcriptional regulator Shew_3590 4288280 - 4288630 + | hypothetical protein Shew_3591 4289939 - 4288620 - | hypothetical protein Shew_3592 4291398 - 4289980 - | Sel1 domain-containing protein TERM 4140 4290644 - 4290629 - G 74 -6.8 -4.36903 | overlap 4290631 CCGACCAAATAGAAA TAGCCC AGCA GGGCCA TGGCATTCACTACCC Shew_3593 4292172 - 4291447 - | hypothetical protein TERM 4141 4292467 - 4292454 - g 71 -6.7 -4.24204 | CACCCAGACTCAAAA CAACG ATCT CGTTG GCACTGTGATGTCTC Shew_3594 4292326 - 4292844 + | hypothetical protein TERM 4142 4292855 - 4292889 + F 75 -8.7 -3.74251 | opp_overlap 4292858, overlap 4292858 4292860 TCTAAAGCCTCGATG AAACAGAGTTCATCT ATACA AGATGAACTCTGTCC TTTCCTGGGACTCTA TERM 4143 4292886 - 4292858 - f 100 -14.8 -3.73968 | opp_overlap 4292858 4292855 4292860 AAAGCCTCGATGAAA CAGAGTTCATCT ATACA AGATGAACTCTG TCCTTTCCTGGGACT TERM 4144 4292858 - 4292886 + F 89 -14.8 -2.96873 | opp_overlap 4292858, overlap 4292855 4292860 AAAGCCTCGATGAAA CAGAGTTCATCT ATACA AGATGAACTCTG TCCTTTCCTGGGACT TERM 4145 4292860 - 4292884 + F 79 -11.6 -3.03701 | opp_overlap 4292858, overlap 4292858 4292855 AGCCTCGATGAAACA GAGTTCATCT ATACA AGATGAACTC TGTCCTTTCCTGGGA Shew_3595 4292936 - 4293388 + | hypothetical protein Shew_3596 4294226 - 4293501 - | methyltransferase type 11 Shew_3597 4295642 - 4294383 - | inner membrane protein YjeH TERM 4146 4295764 - 4295778 + H 71 -10 -2.70936 | overlap 4295761 ATTTTTATCGATTTA CCGACA CTT TGTCGG TCATATGCTTGGTCA Shew_3598 4295812 - 4296240 + | AsnC family transcriptional regulator TERM 4147 4297483 - 4297524 + G 71 -8 -3.91897 | gap 1, opp_overlap 4297521 GAGTTTGGCGAGGCT CAGGTGGTGCGCACCATCG CGGGC CG-TGGTGAGCAACAGCTG TTTATCGGTAACAGC Shew_3599 4296340 - 4298043 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase Shew_3600 4298043 - 4298840 + | alpha/beta hydrolase fold Shew_3601 4298837 - 4299895 + | O-succinylbenzoate synthase Shew_3602 4299892 - 4301406 + | O-succinylbenzoate-CoA ligase TERM 4148 4301391 - 4301420 + T 78 -10.9 -3.19065 | opp_overlap 4301398, overlap 4301398 CCATGGATTAGTTAC AAAAAAACCTGCT TGAT AGCAGGTTTTTTC ATTCTTTGTTATTCA TERM 4149 4301398 - 4301413 + T 100 -9 -5.4148 | opp_overlap 4301398, overlap 4301391 TTAGTTACAAAAAAA CCTGCT TGAT AGCAGG TTTTTTCATTCTTTG TERM 4150 4301413 - 4301398 - T 100 -9 -5.64274 | opp_overlap 4301391 4301398 TTAGTTACAAAAAAA CCTGCT TGAT AGCAGG TTTTTTCATTCTTTG Shew_3603 4302303 - 4301446 - | RNA polymerase factor sigma-32 Shew_3604 4303563 - 4302598 - | hypothetical protein Shew_3605 4304279 - 4303578 - | cell division ATP-binding protein FtsE TERM 4151 4304228 - 4304215 - G 71 -6.7 -4.34402 | CGTTTCAGATGAAAA CTCAC ATCG GTGAG GGCCTTCTGACCACC Shew_3606 4306048 - 4304363 - | signal recognition particle-docking protein FtsY Shew_3607 4306297 - 4306884 + | putative methyltransferase Shew_3608 4306884 - 4307174 + | hypothetical protein TERM 4152 4307206 - 4307237 + T 72 -9.7 -3.25073 | gap 1, opp_overlap 4307214, overlap 4307207 4307214 AAAAAAAAGCAGTCA T-TAAAAAAGCCCC ATATA GGGGCTTTTTTATA TCTTAATCTTAACCA TERM 4153 4307207 - 4307235 + T 95 -14.8 -3.18768 | opp_overlap 4307214, overlap 4307206 4307214 AAAAAAAGCAGTCAT TAAAAAAGCCCC ATATA GGGGCTTTTTTA TATCTTAATCTTAAC TERM 4154 4307228 - 4307214 - T 91 -8.5 -5.1675 | opp_overlap 4307207 4307206 4307214 GCAGTCATTAAAAAA GCCCC ATATA GGGGC TTTTTTATATCTTAA TERM 4155 4307214 - 4307228 + T 100 -8.5 -5.47431 | opp_overlap 4307214, overlap 4307207 4307206 GCAGTCATTAAAAAA GCCCC ATATA GGGGC TTTTTTATATCTTAA Shew_3609 4308014 - 4307253 - | type II secretion system protein N Shew_3610 4308511 - 4308035 - | general secretion pathway M protein Shew_3611 4309703 - 4308513 - | general secretion pathway protein L Shew_3612 4310786 - 4309788 - | general secretion pathway protein K Shew_3613 4311558 - 4310779 - | general secretion pathway protein J TERM 4156 4311423 - 4311436 + g 78 -4.5 -4.91873 | overlap 4311422 GCTGGGCAAACTCGG CGGTG ACCT CATCG TTTTTCATTACTGTG Shew_3614 4311943 - 4311539 - | general secretion pathway protein I Shew_3615 4312514 - 4311936 - | general secretion pathway protein H TERM 4157 4312394 - 4312374 - G 71 -8.9 -3.85698 | opp_overlap 4312378 4312385 4312386 GGTGGCCGCCATAAA CTGACGCGC CGT GCGCTCCAG CGCCTTGTGTTGGTC Shew_3616 4312969 - 4312535 - | general secretion pathway protein G Shew_3617 4314261 - 4313041 - | general secretion pathway protein F Shew_3618 4315835 - 4314264 - | general secretory pathway protein E Shew_3619 4317951 - 4315828 - | general secretion pathway protein D TERM 4158 4316656 - 4316691 + g 70 -11.8 -2.61383 | overlap 4316648 4316655 4316667 GACCTTGCCCAGCGC CTGGGCCAGCAGGGTG ATGT CACCCTTCTTGTCCGG ATTATCGGTACAGGT TERM 4159 4317910 - 4317935 + g 78 -4.7 -5.00467 | gap 1, opp_overlap 4317894, overlap 4317912 CGAGGCGCCCATCAC GACGCTCGCGAT AAG ATTGCG-GCGTA TTTTCTTGTTGTTCA TERM 4160 4317912 - 4317933 + g 71 -7.3 -4.10348 | gap 1, opp_overlap 4317894, overlap 4317910 AGGCGCCCATCACGA CGCTCGCGAT AAG ATTGCG-GCG TATTTTCTTGTTGTT Shew_3620 4318891 - 4317974 - | general secretion pathway protein C TERM 4161 4318834 - 4318867 + g 70 -9.6 -3.40102 | opp_overlap 4318837, overlap 4318832 4318839 AGAATACGGCCGAAC TCAGAGGCTTCTGC GGCACG GCAGAGGCCTTAGA TATTACTTTGTCTAA TERM 4162 4318839 - 4318862 + g 70 -10.3 -3.22877 | opp_overlap 4318837, overlap 4318834 4318832 ACGGCCGAACTCAGA GGCTTCTGC GGCACG GCAGAGGCC TTAGATATTACTTTG TERM 4163 4319399 - 4319364 - g 86 -2.4 -5.61596 | overlap 4319376 4319384 ATCGTCATAAAAAAA TTATCCGAGCAACGCC AGAA GGCGGTGGTCGCCCAA ACCTTATATGAAGAG Shew_3621 4319154 - 4319546 + | RNA-binding S4 domain-containing protein TERM 4164 4320012 - 4320052 + G 71 -11.7 -3.14527 | opp_overlap 4320042, overlap 4320011 TGAGCAGCTGCCTAC CGCCATCCGCCTGTTTGCC AAC GGCAAGCAGGCCGCCGGCA TGTTGCTACAGGTTC hslO 4319560 - 4320420 + | Hsp33-like chaperonin TERM 4165 4320448 - 4320469 + F 100 -10.2 -5.4477 | opp_overlap 4320448 4320446 4320435 AATTCATGATTAATA GAGGATGC CTGTGC GCATCCTC TTTTTTTCACGATTT TERM 4166 4320469 - 4320448 - f 74 -10.2 -3.17794 | opp_overlap 4320448, overlap 4320446 4320435 AATTCATGATTAATA GAGGATGC CTGTGC GCATCCTC TTTTTTTCACGATTT TERM 4167 4320739 - 4320759 + G 70 -11.1 -2.97475 | opp_overlap 4320726 4320727, overlap 4320738 AACCGGCGAGCGTAC CGGGCGTTC ACC GAACGACCG CTTTATCGTGAAAGA Shew_3623 4320611 - 4322152 + | phosphoenolpyruvate carboxykinase TERM 4168 4322196 - 4322181 - f 87 -10.4 -4.30441 | opp_overlap 4322181 TGACAATATTTAAAA TGGCCC GTCG GGGCCA TTTTTTATTGCCTAA TERM 4169 4322181 - 4322196 + F 100 -10.4 -5.4833 | opp_overlap 4322181 TGACAATATTTAAAA TGGCCC GTCG GGGCCA TTTTTTATTGCCTAA Shew_3624 4322361 - 4324166 + | hypothetical protein TERM 4170 4324256 - 4324235 - f 93 -10.2 -4.99035 | opp_overlap 4324235 TCAGCTACATAAAAA GAGGATGG TGAATG CCATCCTC TTTTTATTCCCCAAC TERM 4171 4324235 - 4324256 + F 100 -10.9 -5.06414 | opp_overlap 4324235 TCAGCTACATAAAAA GAGGATGGT GAAT GCCATCCTC TTTTTATTCCCCAAC Shew_3625 4324508 - 4325734 + | sodium:dicarboxylate symporter TERM 4172 4325749 - 4325779 + F 91 -9.6 -4.72272 | opp_overlap 4325749, overlap 4325751 4325753 ACGGGCTAATAATAT CTTGGCCGGGTGCC GTT GGCATCCGGCTATC TTTTTCCTGCGACCA TERM 4173 4325751 - 4325777 + F 100 -16.6 -3.98256 | opp_overlap 4325749, overlap 4325749 4325753 GGGCTAATAATATCT TGGCCGGGTGCC GTT GGCATCCGGCTA TCTTTTTCCTGCGAC TERM 4174 4325753 - 4325775 + F 100 -17 -3.57901 | opp_overlap 4325749, overlap 4325751 4325749 GCTAATAATATCTTG GCCGGGTGCC GTT GGCATCCGGC TATCTTTTTCCTGCG Shew_3626 4326037 - 4326462 + | hypothetical protein Shew_3627 4326459 - 4326656 + | XRE family transcriptional regulator TERM 4175 4326648 - 4326676 + F 71 -10.4 -2.69799 | gap 2, opp_overlap 4326647 4326645 4326650 ATCTTCGAGGAAGAC G-AGGCCT-AGGCC TCA GGCCTCAGGCCTAC TAATATATCCCATGG TERM 4176 4326673 - 4326650 - f 85 -13.2 -2.77523 | gap 1, opp_overlap 4326648, overlap 4326647 4326645 CTTCGAGGAAGACGA GGCCT-AGGCC TCA GGCCTCAGGCC TACTAATATATCCCA TERM 4177 4326690 - 4326711 + F 80 -8.7 -4.18197 | ACTAATATATCCCAT GGCCCCT ATTGACTC AGGGGCC TTTTAGATCGACACT Shew_3628 4326813 - 4327295 + | MgtC/SapB transporter TERM 4178 4327337 - 4327303 - T 80 -10.7 -3.36878 | gap 1, overlap 4327336 GCTATTGATCCATAA GGTGGGGCGCCTCGGC GCGC GCC-AGACACCACACC TGCACCTGGATGTAG Shew_3629 4328047 - 4327289 - | competence protein ComF TERM 4179 4327482 - 4327457 - G 71 -7.4 -4.08485 | opp_overlap 4327458, overlap 4327458 GTCACTTAAACGAAA GGCGCCGGCG AGATTG CGCCGTCGCT GCTTACCCGTCAGCC Shew_3630 4328079 - 4328858 + | bioH protein TERM 4180 4329233 - 4329190 - g 73 -8.8 -3.96449 | overlap 4329191 4329226 CAACAGGCGAAACAA GGCGCAGCCGCCATCATAAG GCCG CTGATGATGAAGCCTGCGCT GGCGCGCCGCGACAT TERM 4181 4329232 - 4329191 - g 73 -12.3 -2.97146 | overlap 4329190 4329226 AACAGGCGAAACAAG GCGCAGCCGCCATCATAAG GCCG CTGATGATGAAGCCTGCGC TGGCGCGCCGCGACA TERM 4182 4329393 - 4329365 - g 81 -15.3 -2.78816 | CCAGCTTCTACCAGA CTCAGACCCTCCC CAA GGGAGAGCCCGAG CTATCCACCTTTATC Shew_3631 4328917 - 4329411 + | hypothetical protein Shew_3632 4331392 - 4329404 - | sulfatase Shew_3633 4331885 - 4332103 + | hypothetical protein TERM 4183 4332169 - 4332154 - T 100 -11.8 -5.28176 | opp_overlap 4332154 TCTAGGCATAAAAAA GGCCGC AAAT GCGGCC TTTAAAAACGGTAAA TERM 4184 4332154 - 4332169 + T 88 -11.8 -3.53811 | opp_overlap 4332154 TCTAGGCATAAAAAA GGCCGC AAAT GCGGCC TTTAAAAACGGTAAA Shew_3634 4334554 - 4332191 - | RNA-binding S1 domain-containing protein TERM 4185 4332290 - 4332300 + g 77 -8.2 -4.31085 | CTTAGCCTGGCTCTT GCCC TGT GGGC TTTTACCTTGATGTC TERM 4186 4332851 - 4332869 + g 70 -10.2 -3.31144 | GGTCTCTGGGTGTAC CGCGCTGG CAT CCAGCGGG TTGTCACCCTCACGA Shew_3635 4336493 - 4334682 - | thiamine pyrophosphate binding domain-containing protein TERM 4187 4336540 - 4336553 + r 72 -9.5 -3.15861 | TAGCCTAGGGGCTGT GGCGC ATCT GCGCC TTGATCGAGATCATC Shew_3636 4337210 - 4336728 - | transcription elongation factor GreB TERM 4188 4336834 - 4336848 + g 70 -11.4 -2.97188 | overlap 4336838 TTGCCGATCAGCGCC CTCGCC ATG GGCGAG TCTATGGTGATATAA TERM 4189 4337259 - 4337235 - H 72 -8.6 -3.69395 | gap 1 GTCACGACTCAACAA GATGC-CAGGC GACC GCCCGCGCATC GAATGATTTTCGGCT ompR 4337617 - 4338342 + | osmolarity response regulator envZ 4338364 - 4339674 + | osmolarity sensor protein Shew_3639 4339825 - 4341783 + | methyl-accepting chemotaxis sensory transducer TERM 4190 4341812 - 4341833 + F 100 -11.6 -4.49981 | opp_overlap 4341804 GAGCAAACTGGAATC TGGCCAGC AGAAAA GCTGGCCA TTTTATGCTAATGTG TERM 4191 4342302 - 4342268 - g 75 -11.4 -3.42574 | CGAAGGCCACTACAA CAGCCAGCAGCTAGAA GAG TTCGAACAGCTGGCCG TCGCCGGGCTGTCAC Shew_3640 4341888 - 4342733 + | hypothetical protein TERM 4192 4342821 - 4342848 + T 90 -12.8 -3.3579 | opp_overlap 4342826, overlap 4342826 TAACAACTAGCCACA AAAAAGGGAGCC TTAG GGCTCCCTTTTC TATTTGCAGCGGTTT TERM 4193 4342826 - 4342843 + T 100 -12.7 -4.78848 | opp_overlap 4342826, overlap 4342821 ACTAGCCACAAAAAA GGGAGCC TTAG GGCTCCC TTTTCTATTTGCAGC TERM 4194 4342843 - 4342826 - T 100 -12.7 -5.28778 | opp_overlap 4342826 4342821 ACTAGCCACAAAAAA GGGAGCC TTAG GGCTCCC TTTTCTATTTGCAGC Shew_3641 4343398 - 4342862 - | redoxin domain-containing protein Shew_3642 4344013 - 4343468 - | hypothetical protein Shew_3643 4344258 - 4344040 - | hypothetical protein Shew_3644 4345375 - 4344752 - | hypothetical protein Shew_3645 4345882 - 4345388 - | hypothetical protein TERM 4195 4345704 - 4345716 + g 76 -3.5 -4.88918 | CAATGTGAACTTTTA TAAAT ACT ATTTA TTTTATTTGAAATAA TERM 4196 4346671 - 4346660 - R 72 -5.8 -4.58466 | GCTAGAAGCATAAAA TGGC ATAG GCCA CCTCTAGCTTTCAAT TERM 4197 4348266 - 4348248 - R 93 -10.3 -5.13741 | TCAAGGCAAGAAAAA GCCCCAA GATTA TTGGGGC ATATACACAATAAAG Shew_3646 4348700 - 4348350 - | hypothetical protein TERM 4198 4348891 - 4348916 + r 100 -9.7 -5.24551 | overlap 4348893 ACTCGCTCTTCATCG CGGCTTTGACG TAGA CGTCGAAGCGG TTTTTCTTGGTTTCG TERM 4199 4348893 - 4348914 + r 74 -10.9 -2.82235 | overlap 4348891 TCGCTCTTCATCGCG GCTTTGACG TAGA CGTCGAAGC GGTTTTTCTTGGTTT Shew_3647 4349653 - 4348874 - | hypothetical protein Shew_3648 4349816 - 4350655 + | hypothetical protein TERM 4200 4350711 - 4350693 - T 91 -11.6 -3.82824 | TAGTACTTAGAAGAA GGGCGCGC AGG GCGTGCCC TGATGATAGATCATC Shew_3649 4351046 - 4350684 - | hypothetical protein Shew_3650 4351783 - 4351052 - | lytic transglycosylase, catalytic Shew_3651 4352793 - 4351783 - | hypothetical protein Shew_3652 4353379 - 4352810 - | LemA family protein Shew_3653 4353491 - 4353730 + | hypothetical protein TERM 4201 4354035 - 4354056 + F 100 -9.5 -5.81412 | gap 1 ATCATCCTTTCATTG GCCC-GCTTA GAC TAAGCTGGGC TTTTTTTTGCCTGAA Shew_3654 4354255 - 4355868 + | AbgT putative transporter TERM 4202 4355878 - 4355903 + T 100 -14.7 -3.71672 | opp_overlap 4355875 4355876, overlap 4355876 CCTTAATACCAACTG CGAGGCCGGTG AAAC CGCCGGTCTCG TTCATTTTGCTAGGC Shew_3655 4356827 - 4355955 - | LysR family transcriptional regulator Shew_3656 4356921 - 4357424 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 4203 4357449 - 4357474 + T 87 -10.4 -4.37534 | opp_overlap 4357449 CTAGCCCATAAAAAA GGCCAACCCT AATCAC AGGGCTGGCC TTTTGGTATCGGTTT TERM 4204 4357474 - 4357449 - T 100 -13.3 -5.26316 | opp_overlap 4357449 CTAGCCCATAAAAAA GGCCAACCCTA ATCA CAGGGCTGGCC TTTTGGTATCGGTTT TERM 4205 4357518 - 4357503 - T 71 -9 -3.36327 | overlap 4357506 TTAGGCTAGTCAGAA CAAGGC ATTA GCCTTG AATGCCCGAGTGTCT Shew_3657 4359549 - 4357510 - | oligopeptidase A Shew_3658 4359876 - 4360652 + | hypothetical protein TERM 4206 4360753 - 4360733 - f 83 -12.6 -3.06302 | opp_overlap 4360732 ACTAGCTTTATCTAA GGCTGGCA AGGAG TGCCAGCC CTGACTTGGAGGACA TERM 4207 4361089 - 4361079 - g 74 -4.6 -4.788 | overlap 4361086 AAACTAAGTCAAAAA CAGC TAA GCCG TAAACAGCAGCTGGC TERM 4208 4361140 - 4361094 - g 79 -12.4 -3.61268 | gap 2, opp_overlap 4361109, overlap 4361086 CAGCTAAGCCGTAAA CAGCAGCTGGCCAGTCGCCAGC ATGTG GCCGACGACC--CCAGCTGCCG TTGGCTCGACAAGCG Shew_3659 4360773 - 4361315 + | hypothetical protein Shew_3660 4361447 - 4362802 + | glutathione reductase TERM 4209 4362860 - 4362831 - T 86 -13.7 -2.59793 | opp_overlap 4362836, overlap 4362836 TGATTGAGAGAACAG CAAAAGGCCAGAC AACT GTCTGGCCTTTTT AATGCTGCCGCGATG TERM 4210 4362855 - 4362836 - T 100 -13.6 -4.48263 | opp_overlap 4362836, overlap 4362831 GAGAGAACAGCAAAA GGCCAGAC AACT GTCTGGCC TTTTTAATGCTGCCG TERM 4211 4362836 - 4362855 + T 100 -13.6 -4.77036 | opp_overlap 4362836 4362831 GAGAGAACAGCAAAA GGCCAGAC AACT GTCTGGCC TTTTTAATGCTGCCG Shew_3661 4363409 - 4363041 - | hypothetical protein TERM 4212 4363229 - 4363247 + g 70 -3.1 -4.70353 | GCTTGTCTTCCAGTT CAAGATC TAACT GCTCTTG TTTTGCTTTATTATC TERM 4213 4363958 - 4363975 + r 78 -5.6 -4.94962 | overlap 4363955 GTTTGTTAGGTTTAC TCCAGA GTATCA TCTGGA TTTTCTTTAAATTCT Shew_3662 4364625 - 4363954 - | hypothetical protein Shew_3663 4365734 - 4364742 - | hypothetical protein TERM 4214 4365415 - 4365398 - G 74 -2.7 -5.00616 | TCCGCTTTGAAAAAA TTGACGC ATAA ACATCAA CTGCCTCAACAAGCG TERM 4215 4365852 - 4365834 - H 70 -5.4 -4.33928 | CATCTGAAATATAAA TAATAACA GTA TGTCATTA CTAAAATAAAGTGAT TERM 4216 4366397 - 4366427 + H 71 -7.7 -3.84451 | gap 1, overlap 4366372 CCTAGCGCCGTCGCT GTCGATTGTTCGCC CTGA GGCCAACAATC-AC TTTGAATTTGAAAGC Shew_3664 4366486 - 4367391 + | alpha-L-glutamate ligase Shew_3665 4367392 - 4368414 + | succinylglutamate desuccinylase/aspartoacylase Shew_3666 4368445 - 4368870 + | hypothetical protein Shew_3667 4368994 - 4370364 + | MgtE integral membrane region TERM 4217 4370513 - 4370486 - f 70 -6.9 -4.13767 | opp_overlap 4370487 4370489, overlap 4370487 CCCGGCATTCGAAAA CGGTGGGCAGG ATAAAA CCTGCCCATCT GGTTAAACAAGATAT TERM 4218 4370487 - 4370512 + F 82 -12.6 -2.71144 | opp_overlap 4370486 4370487, overlap 4370489 CCGGCATTCGAAAAC GGTGGGCAGG ATAAAA CCTGCCCATC TGGTTAAACAAGATA TERM 4219 4370512 - 4370487 - f 73 -10.4 -3.08046 | opp_overlap 4370487 4370489, overlap 4370486 CCGGCATTCGAAAAC GGTGGGCAGG ATAAAA CCTGCCCATC TGGTTAAACAAGATA TERM 4220 4370489 - 4370510 + F 78 -11.6 -2.90075 | opp_overlap 4370487 4370486, overlap 4370487 GGCATTCGAAAACGG TGGGCAGG ATAAAA CCTGCCCA TCTGGTTAAACAAGA TERM 4221 4371199 - 4371239 + G 71 -4.6 -4.61852 | gap 1, overlap 4371180 4371179 4371201 4371213 GTGGCGCTGGTGAGT GCCATGGCG-TTTGGCGGC AATC GACGCAAGATCGCCGTGCC TTTCTTTATCCTCTT Shew_3668 4370527 - 4371483 + | hypothetical protein Shew_3669 4372470 - 4371745 - | ThiJ/PfpI domain-containing protein TERM 4222 4372445 - 4372421 - G 83 -15.7 -2.89683 | overlap 4372434 AGCTTAGGGGAGAGA CCGGCGGCG AATACCG CGCCGCCGG CCAGGATAAATTCTC Shew_3670 4373805 - 4372600 - | metal dependent phosphohydrolase TERM 4223 4373921 - 4373907 - R 71 -9.2 -3.28712 | CTGGGCGCGGCAGAA CGCCAG AGG CCGGCG AGGATAGTTTCAGGC Shew_3671 4374218 - 4374012 - | hypothetical protein Shew_3672 4375006 - 4374251 - | hypothetical protein TERM 4224 4374604 - 4374627 + g 71 -11 -3.10028 | overlap 4374608 TGCCAAGCAGCTCGG CCAGGGCGTA GGCT TGCGCCTTGG TCTTCACCTCTTCCT Shew_3673 4375548 - 4375009 - | hypothetical protein Shew_3674 4376216 - 4375563 - | cobalt transport protein Shew_3675 4377588 - 4376224 - | ABC transporter-related protein TERM 4225 4377545 - 4377529 - G 84 -13.7 -3.61328 | opp_overlap 4377531 ATTAAGATCCTCAAA CAGCGGC TGC GCCGCTG TCTGGAAGTTAAAAT Shew_3676 4379805 - 4377598 - | TonB-dependent receptor, plug Shew_3677 4380196 - 4381554 + | isochorismate synthase Shew_3678 4382311 - 4381556 - | hypothetical protein Shew_3679 4382549 - 4383217 + | hypothetical protein Shew_3680 4383298 - 4383759 + | GCN5-related N-acetyltransferase TERM 4226 4383918 - 4383942 + T 100 -9.4 -5.37043 | gap 1, overlap 4383919 TCACACACTCTTTGT G-GCCGGAATA TTAG TATTCCGGCTC TTTTTTATCTAAAGT TERM 4227 4383919 - 4383940 + T 100 -13.1 -4.31943 | overlap 4383918 CACACACTCTTTGTG GCCGGAATA TTAG TATTCCGGC TCTTTTTTATCTAAA Shew_3681 4386163 - 4384022 - | integral membrane sensor signal transduction histidine kinase TERM 4228 4385803 - 4385822 + g 70 -5.6 -4.4078 | overlap 4385804 TCAGCCTGAGGAAGT CCAGGTCG AGCT CGGCCTGC TTTTGCTTGAGCAGC Shew_3682 4387596 - 4386166 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 4229 4386863 - 4386833 - G 83 -9.6 -4.20918 | GCGAAGCTGAATAAA CCTTCACGGTTGCC CTT GGCGCCGGTGAAGG AACCAGCCGCATGAC Shew_3683 4387826 - 4388638 + | extracellular solute-binding protein TERM 4230 4388682 - 4388662 - g 75 -12.6 -3.04144 | opp_overlap 4388662, overlap 4388664 TGGTTAGCCCTAATA CAGCAGGC GTTGA GCCTGCTG TTTTCATTAGATCCC TERM 4231 4388662 - 4388682 + G 95 -12.6 -4.43477 | opp_overlap 4388662 4388664 TGGTTAGCCCTAATA CAGCAGGC GTTGA GCCTGCTG TTTTCATTAGATCCC Shew_3684 4388635 - 4389342 + | binding-protein-dependent transport systems inner membrane component TERM 4232 4389761 - 4389741 - g 73 -11.8 -3.00298 | opp_overlap 4389755, overlap 4389737 CTGCTCAACCAGAGA GCCGCCAG CCTCT CCGGCGGC GAGCGCCAACGTCTT Shew_3685 4389345 - 4390061 + | ABC transporter-related protein TERM 4233 4390548 - 4390534 - g 72 -10 -3.59979 | opp_overlap 4390528 TTCTGGTACGCCAAA CACCAC TGC GTGGTG TGTGACTTCTCCGAT Shew_3686 4390045 - 4390635 + | molybdopterin-guanine dinucleotide biosynthesis protein A Shew_3687 4390650 - 4392449 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 4234 4392550 - 4392579 + G 74 -7.9 -4.27259 | gap 1, opp_overlap 4392550 4392575, overlap 4392552 4392576 CCGCACCGTGGAATA TCTGCGTCTCTCGG TGA CCGACAGATGC-GA TTTTCGCTGTGTCTA Shew_3688 4392509 - 4393495 + | molybdenum cofactor biosynthesis protein A Shew_3689 4393559 - 4394011 + | hypothetical protein TERM 4235 4394821 - 4394803 - g 76 -6.7 -4.55287 | gap 1, opp_overlap 4394801 4394803 4394814, overlap 4394813 4394814 CTGAGCGAGATAAAA CTG-GGCC AAAG GGCCACAG TCTTCTGCGGCCTGT Shew_3690 4394035 - 4394850 + | formamidopyrimidine-DNA glycosylase TERM 4236 4394941 - 4394910 - T 100 -14 -4.56597 | gap 1, opp_overlap 4394917, overlap 4394917 TCCCTGCCGCAAAAA GCAAAAAGGCTGACA AGA TGTCAGCCTTTTT-C TTTACTCGTTTTCAG TERM 4237 4394917 - 4394935 + T 100 -13.2 -5.34309 | opp_overlap 4394910 4394917 CGCAAAAAGCAAAAA GGCTGACA AGA TGTCAGCC TTTTTCTTTACTCGT TERM 4238 4394935 - 4394917 - T 100 -13.2 -5.18355 | opp_overlap 4394917, overlap 4394910 CGCAAAAAGCAAAAA GGCTGACA AGA TGTCAGCC TTTTTCTTTACTCGT Shew_3691 4396507 - 4395002 - | hypothetical protein coaD 4396994 - 4396518 - | phosphopantetheine adenylyltransferase TERM 4239 4397384 - 4397367 - g 71 -7.7 -4.15565 | TCTATGAGCTTAAAA TGGCGCT GCCC AACGCCA GCATTGAGGTCTTCG Shew_3693 4397285 - 4398310 + | ADP-heptose--lipooligosaccharide heptosyltransferase III Shew_3694 4398356 - 4399309 + | ADP-L-glycero-D-manno-heptose-6-epimerase TERM 4240 4399337 - 4399373 + T 100 -15.3 -3.31726 | opp_overlap 4399345, overlap 4399345 AAGTTATCGATCAGC AAAAGAAAGCCCCGGGT GAT ACCTGGGGCTTTTTTTA TCTTATCTCCCGCAC TERM 4241 4399365 - 4399345 - T 100 -12.5 -4.73614 | opp_overlap 4399337 4399345 GATCAGCAAAAGAAA GCCCCGGGT GAT ACCTGGGGC TTTTTTTATCTTATC TERM 4242 4399345 - 4399365 + T 100 -14.7 -5.84432 | opp_overlap 4399345, overlap 4399337 GATCAGCAAAAGAAA GCCCCGGGT GAT ACCTGGGGC TTTTTTTATCTTATC Shew_3695 4399763 - 4399371 - | cytidyltransferase-like protein Shew_3696 4400776 - 4399760 - | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase TERM 4243 4401052 - 4401084 + H 74 -5.4 -4.60797 | opp_overlap 4401069 GAGCAAACTCATAGT CCCGGGTCACTGGC AAATA GCCATTGGCCAAGG TTTTCTCTGTCACCA Shew_3697 4401146 - 4402318 + | glycosyl transferase family protein TERM 4244 4402716 - 4402689 - g 72 -12.8 -2.55351 | gap 1, overlap 4402688 GTCGGGGAGATCAAT GCC-GCCTTCGAC GCC GTCGAAAGCTGGC CGCAAACCGATGGCC Shew_3698 4402335 - 4403189 + | glycosyl transferase family protein TERM 4245 4403239 - 4403266 + F 76 -7.8 -4.25283 | gap 1 ATCACTTAAGTTTTA GGGCTGCATAC ACTAACA GT-TGCAGCCC TTTTCATGCCACAGT Shew_3699 4403439 - 4404230 + | glycosyl transferase family protein Shew_3700 4405327 - 4404227 - | glycosyl transferase, group 1 TERM 4246 4405275 - 4405293 + g 70 -11.6 -2.98823 | overlap 4405279 AGGACAATCTTCTCT GCCCCGCC ACC GGCGAGGC TATCTATGGCCAAGC Shew_3701 4406393 - 4405317 - | hypothetical protein Shew_3702 4407591 - 4406512 - | glycosyl transferase family protein Shew_3703 4407727 - 4408275 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 4247 4408541 - 4408516 - g 75 -12.7 -3.08798 | AGCCCTCAGGCAATA CCAGATAGATC TGGT GATCCATCTGG CAGCGGAGACCCATG Shew_3704 4408268 - 4409338 + | dTDP-glucose 4,6-dehydratase Shew_3705 4409367 - 4410296 + | dTDP-4-dehydrorhamnose reductase TERM 4248 4410387 - 4410374 - g 78 -4.5 -4.90778 | opp_overlap 4410374 4410377 4410379, overlap 4410378 TCTATGCAAATAAAA CCTAC CGAT GCAGG TTGCATCGTCTTTAG TERM 4249 4410379 - 4410395 + G 70 -10.9 -3.34894 | opp_overlap 4410374 4410378, overlap 4410374 4410377 GCAAATAAAACCTAC CGATGCA GGT TGCATCG TCTTTAGCCAAGCTT Shew_3706 4410362 - 4411087 + | 3-deoxy-D-manno-octulosonic-acid kinase Shew_3707 4412380 - 4411115 - | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein TERM 4250 4411190 - 4411220 + g 70 -9.6 -3.41527 | overlap 4411191 CTCAACCACCTCGAG CCCGGCCTCTCTGG CGA CCAGATAGGCCGCC TTATCGTCAAACTTA TERM 4251 4411191 - 4411219 + g 73 -13.1 -2.64595 | overlap 4411190 TCAACCACCTCGAGC CCGGCCTCTCTGG CGA CCAGATAGGCCGC CTTATCGTCAAACTT Shew_3708 4412666 - 4413319 + | TetR family transcriptional regulator Shew_3709 4413736 - 4414929 + | 2-amino-3-ketobutyrate coenzyme A ligase tdh 4414940 - 4415965 + | L-threonine 3-dehydrogenase Shew_3711 4416054 - 4416359 + | rhodanese domain-containing protein Shew_3712 4416377 - 4417213 + | rhomboid family protein TERM 4252 4417260 - 4417284 + T 100 -17.3 -3.69702 | opp_overlap 4417260 4417263, overlap 4417263 AGGTCACGAGATCAA TAAGGGCCCAT TAA ATGGGCCCTTA TTCTATTAGCTAATA TERM 4253 4417284 - 4417260 - T 100 -17.3 -3.29649 | opp_overlap 4417260 4417263, overlap 4417263 AGGTCACGAGATCAA TAAGGGCCCAT TAA ATGGGCCCTTA TTCTATTAGCTAATA TERM 4254 4417281 - 4417263 - T 100 -14.6 -3.78778 | opp_overlap 4417260 4417263, overlap 4417260 TCACGAGATCAATAA GGGCCCAT TAA ATGGGCCC TTATTCTATTAGCTA TERM 4255 4417263 - 4417281 + T 100 -14.6 -3.97511 | opp_overlap 4417263 4417260, overlap 4417260 TCACGAGATCAATAA GGGCCCAT TAA ATGGGCCC TTATTCTATTAGCTA Shew_3713 4417999 - 4417346 - | isoprenoid biosynthesis protein Shew_3714 4418346 - 4421138 + | DNA polymerase I TERM 4256 4421223 - 4421242 + T 100 -15 -5.69473 | opp_overlap 4421212 AAAATGCCTCGACTA TGCCCCGG CAGA CCGGGGCA TTTTTTTATGCTGTG TERM 4257 4421403 - 4421419 + T 77 -4.4 -5.055 | TTAGATCAAAAACCT GTGCTT TTATT GAGCAC TTTTTTAGACATTGC TERM 4258 4421580 - 4421604 + T 100 -20.1 -5.58454 | opp_overlap 4421573 AAGCCAAATTCTGGC GCCCCAGCAAG TTA CTTGCTGGGGC TTTTTTTCGTCTGAA TERM 4259 4421757 - 4421779 + T 100 -12 -5.75342 | AGCTAATGTATTTTT TGCCGATGGT GTA GCCGTCGGCA TTTTTTTTACCCACC TERM 4260 4421895 - 4421877 - T 100 -12.4 -5.64274 | opp_overlap 4421876 CCAGGCATAAAAAAA CGCCCCCA ATC TGGAGGCG CTCTCTAATCACAAG Shew_3715 4422576 - 4421920 - | GTPase EngB Shew_3716 4422745 - 4423365 + | cytochrome c, class I TERM 4261 4423386 - 4423403 + F 100 -11.3 -4.56597 | opp_overlap 4423386 CGCTGGATAACGAAA GGGTGGT TTAT ACCACCC TTTTTAACACCCCAA TERM 4262 4423403 - 4423386 - f 91 -11.3 -3.9941 | opp_overlap 4423386 CGCTGGATAACGAAA GGGTGGT TTAT ACCACCC TTTTTAACACCCCAA TERM 4263 4423437 - 4423420 - f 72 -8.5 -3.66803 | opp_overlap 4423420 TTTTAACACCCCAAA GTTTACG TTTA CGTAAAC TGTTGAAAATTGGTG TERM 4264 4423742 - 4423732 - f 70 -5.4 -4.37886 | opp_overlap 4423732 TTACGGTTCAGAAAA CAGT TGA ACTG CTTACTGCTGAACTT TERM 4265 4423992 - 4424004 + F 82 -7.7 -4.56597 | opp_overlap 4423992 TGGAATCAGAATTGA GTACC TTT GGTAC TTTTTGGAAGGCGAC TERM 4266 4424014 - 4424034 + F 100 -15.5 -5.71712 | TGGTACTTTTTGGAA GGCGACAGT GAT ACTGTCGCC TTTTTTTATATCCGG Shew_3717 4424140 - 4424808 + | hypothetical protein Shew_3718 4424856 - 4425389 + | hypothetical protein TERM 4267 4425402 - 4425384 - f 74 -7.4 -4.24745 | overlap 4425387 GATTATCAAGATAAA GACTAGCC TCA GGCTAACC CAAATGGCATCGATT TERM 4268 4425425 - 4425407 - f 100 -13.2 -3.76125 | opp_overlap 4425407 TCAGGCTAACCCAAA TGGCATCG ATT CGATGCCA TTTCTCTATCTCGCC TERM 4269 4425407 - 4425425 + F 100 -13.2 -4.17296 | opp_overlap 4425407 TCAGGCTAACCCAAA TGGCATCG ATT CGATGCCA TTTCTCTATCTCGCC TERM 4270 4425598 - 4425588 - g 72 -2.4 -4.91511 | ACCGCACGACAAAAA GCGC AAC GCGA AGCCCAACAAGCCGC Shew_3719 4425483 - 4425950 + | hypothetical protein TERM 4271 4425997 - 4425971 - f 71 -3.8 -4.82901 | GTCGGTGCACAAAAA CGGCTTAA GACCAAGACAT TTAAGCCG AAAACAAGGATATTC Shew_3720 4426159 - 4427499 + | coproporphyrinogen III oxidase TERM 4272 4427536 - 4427517 - T 100 -12.2 -4.93696 | opp_overlap 4427517 CCCAAACATGAAAAA GCCGATGA ATCA TCATCGGC TTTTTTGTTTATGCT TERM 4273 4427517 - 4427536 + T 100 -12.2 -5.73978 | opp_overlap 4427517 CCCAAACATGAAAAA GCCGATGA ATCA TCATCGGC TTTTTTGTTTATGCT Shew_3721 4428550 - 4427555 - | adenosine deaminase TERM 4274 4428300 - 4428286 - G 70 -11.4 -2.9006 | opp_overlap 4428285 4428287 AATCCAGGCCAGAGA TCGCCG CAT CGGCGA CGTTCTCATAGGCCA Shew_3722 4428785 - 4430569 + | hypothetical protein TERM 4275 4430587 - 4430616 + F 72 -9.4 -3.15544 | opp_overlap 4430587 CCTCCAGCGTATTAA TGGCTTGAGG AACTTAGCCC CCTCAAGCCA TTAATCGCCATAAGA TERM 4276 4430616 - 4430587 - f 78 -10.8 -3.16564 | opp_overlap 4430587 CCTCCAGCGTATTAA TGGCTTGAGGAA CTTAGC CCCCTCAAGCCA TTAATCGCCATAAGA Shew_3723 4430676 - 4431665 + | alpha/beta hydrolase fold Shew_3724 4434146 - 4431654 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4277 4434361 - 4434326 - H 93 -15.6 -3.00797 | opp_overlap 4434333, overlap 4434333 GTGAAAGCCAGAAAC GAAAAAAGCCCTAGCA TTGC TGCTAGGGCTTTCATC TTAATGTTGGTGGGC TERM 4278 4434333 - 4434354 + H 100 -14.5 -3.96696 | opp_overlap 4434326 4434333 CCAGAAACGAAAAAA GCCCTAGCA TTGC TGCTAGGGC TTTCATCTTAATGTT TERM 4279 4434354 - 4434333 - H 100 -14.5 -5.42514 | opp_overlap 4434333, overlap 4434326 CCAGAAACGAAAAAA GCCCTAGCA TTGC TGCTAGGGC TTTCATCTTAATGTT TERM 4280 4434571 - 4434536 - H 84 -13.4 -2.68823 | opp_overlap 4434543, overlap 4434543 CTTTTTGCACACAAC GAAAAAAGCCCCAGCA TTGC TGCTAGGGCTTTCGTC TTAATGTTGGCGGAG TERM 4281 4434564 - 4434543 - H 100 -12.3 -5.35354 | opp_overlap 4434543, overlap 4434536 CACACAACGAAAAAA GCCCCAGCA TTGC TGCTAGGGC TTTCGTCTTAATGTT TERM 4282 4434543 - 4434564 + H 82 -10.1 -3.96696 | opp_overlap 4434543 4434536 CACACAACGAAAAAA GCCCCAGCA TTGC TGCTAGGGC TTTCGTCTTAATGTT TERM 4283 4436017 - 4436028 + H 71 -4.4 -4.7254 | CATCTTGCGATTTTG CACA GTGC TGTG TTTTTGATAAACAGT TERM 4284 4437319 - 4437331 + H 82 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 4285 4439853 - 4439863 + H 75 -4.6 -5.01732 | CGCTTCTCCCTGTCG GCGT CAA GCGC TTTTTTCAAAAGATT Shew_3725 4440161 - 4440718 + | carbonic anhydrase TERM 4286 4440787 - 4440806 + T 91 -11.4 -3.86897 | opp_overlap 4440773 AGCCTAGATTTAGAT GGCGTCGA TATC TCGGCGCC TTTATGACGACTAGA Shew_3726 4441125 - 4440853 - | hypothetical protein Shew_3727 4442078 - 4441164 - | shikimate 5-dehydrogenase TERM 4287 4442034 - 4442049 + g 83 -9 -4.65895 | ATTTGATTCGATTGC GCTCAG TCTA CTGAGC TTTTTCGGTGAAGCA TERM 4288 4442392 - 4442419 + G 71 -9 -3.73953 | GCTGTTCGAGTTCCT CAGCGGCTGGCT GGGC GGCCCGCAGCTG TTTCATCAACGTCAT Shew_3728 4442180 - 4442608 + | globin TERM 4289 4442628 - 4442660 + T 85 -11.6 -3.46659 | gap 1, opp_overlap 4442636, overlap 4442629 4442636 TTGCCATTGTCCTGA T-TAAAAAAGGGCTC ATTC GAGCCCTTTTTTATA TTCCTTATGCCTCTA TERM 4290 4442629 - 4442658 + T 100 -16.7 -3.30039 | opp_overlap 4442636, overlap 4442628 4442636 TGCCATTGTCCTGAT TAAAAAAGGGCTC ATTC GAGCCCTTTTTTA TATTCCTTATGCCTC TERM 4291 4442651 - 4442636 - T 93 -10.4 -5.14563 | opp_overlap 4442629 4442628 4442636 GTCCTGATTAAAAAA GGGCTC ATTC GAGCCC TTTTTTATATTCCTT TERM 4292 4442636 - 4442651 + T 100 -10.4 -5.50925 | opp_overlap 4442636, overlap 4442629 4442628 GTCCTGATTAAAAAA GGGCTC ATTC GAGCCC TTTTTTATATTCCTT Shew_3729 4443576 - 4442665 - | coproporphyrinogen III oxidase Shew_3730 4444152 - 4443595 - | Sua5/YciO/YrdC/YwlC family protein TERM 4293 4444184 - 4444202 + r 74 -11 -2.57132 | overlap 4444183 TGTTCAACGGGTCGA CTTGACCC TAT GGGTCGAG ATTATACAGACAAAG Shew_3731 4444817 - 4444254 - | DNA topoisomerase type IA Zn finger domain-containing protein Shew_3732 4444955 - 4446766 + | collagenase TERM 4294 4446782 - 4446797 + T 91 -10.4 -4.68908 | opp_overlap 4446782 TCAAGCATTAAAAAA GGAGGC TCAG GCCTCC TTTCTTTTAAATCCG TERM 4295 4446797 - 4446782 - T 100 -10.4 -5.2189 | opp_overlap 4446782 TCAAGCATTAAAAAA GGAGGC TCAG GCCTCC TTTCTTTTAAATCCG Shew_3733 4447297 - 4446824 - | hypothetical protein Shew_3734 4448319 - 4447300 - | DNA protecting protein DprA Shew_3735 4449505 - 4448408 - | peptidoglycan-binding LysM Shew_3736 4449631 - 4450143 + | peptide deformylase Shew_3737 4450151 - 4451125 + | methionyl-tRNA formyltransferase Shew_3738 4451122 - 4452405 + | sun protein trkA 4452415 - 4453824 + | potassium transporter peripheral membrane component Shew_3740 4453855 - 4455297 + | TrkH family potassium uptake protein Shew_3741 4456515 - 4455319 - | putative SAM-dependent methyltransferase TERM 4296 4456389 - 4456407 + g 79 -7.4 -4.5852 | GTGGTTTCGATTCTG GCTTAGCT TTT GGCTGAGC TTTTGATTTAGATTG Shew_3742 4456967 - 4456560 - | flagellar basal body-associated protein FliL-like protein Shew_3743 4457143 - 4457709 + | chorismate lyase TERM 4297 4457708 - 4457738 + T 91 -11.3 -3.80625 | opp_overlap 4457715, overlap 4457715 TCGACCGGCTGGCAT AAAAAAACGCCTC TTAAT GAGGCGTTTTTTG TTTAGCTTCTGCGGC TERM 4298 4457731 - 4457715 - T 100 -9.4 -5.60993 | opp_overlap 4457708 4457715 GCTGGCATAAAAAAA CGCCTC TTAAT GAGGCG TTTTTTGTTTAGCTT TERM 4299 4457715 - 4457731 + T 100 -9.4 -5.67283 | opp_overlap 4457715, overlap 4457708 GCTGGCATAAAAAAA CGCCTC TTAAT GAGGCG TTTTTTGTTTAGCTT Shew_3744 4460595 - 4457740 - | peptidase M6, immune inhibitor A TERM 4300 4458742 - 4458772 + g 75 -12.5 -3.05596 | ATCGACGCCGTTGTA GCTGCGCAGCTGC ACCAG GTAGCGGCGCGGC TTGCCTGGACGGGTG TERM 4301 4460930 - 4460958 + r 80 -10.1 -3.75578 | opp_overlap 4460926 4460935 CAGCGGCTAAATAGC GAGAAGCGCGGCG AAT CGCCACGCCACTC TTATCTCTTCTCTCT TERM 4302 4460953 - 4460935 - R 100 -13.8 -3.452 | opp_overlap 4460930, overlap 4460926 GCTAAATAGCGAGAA GCGCGGCG AAT CGCCACGC CACTCTTATCTCTTC Shew_3745 4463200 - 4460984 - | glycoside hydrolase family protein TERM 4303 4463388 - 4463352 - R 71 -9.3 -3.31248 | opp_overlap 4463348 4463352 CAAGACGCGCCAGAA GGGTTAAGCGCAGGCCA GTT CGGCGAGTGCCTAACCC TTACCTTAGATTTTG Shew_3746 4463997 - 4463404 - | multiple antibiotic resistance (MarC)-related protein Shew_3747 4464226 - 4465848 + | hypothetical protein Shew_3748 4465911 - 4466717 + | hypothetical protein Shew_3749 4467136 - 4466714 - | hypothetical protein Shew_3750 4467245 - 4467796 + | phospholipid/glycerol acyltransferase Shew_3751 4467872 - 4468495 + | lysine exporter protein LysE/YggA Shew_3752 4469742 - 4468492 - | MscS mechanosensitive ion channel TERM 4304 4469304 - 4469290 - G 72 -5.7 -4.3587 | GACGAAGAACATAAA CAGCT TGAGC AGCTG CACGAAACTCTTGAT Shew_3753 4469926 - 4470450 + | hypothetical protein Shew_3754 4470544 - 4471221 + | hypothetical protein TERM 4305 4471260 - 4471286 + T 74 -9.5 -3.29511 | opp_overlap 4471265, overlap 4471265 TCGTTAGTCGAAAAG AAAAACAGGCC TTAAT GGCCTGTTTTA TTATGCGGACGTAGC TERM 4306 4471281 - 4471265 - T 100 -9.4 -5.46706 | opp_overlap 4471260 4471265 AGTCGAAAAGAAAAA CAGGCC TTAAT GGCCTG TTTTATTATGCGGAC TERM 4307 4471265 - 4471281 + T 91 -9.4 -4.77165 | opp_overlap 4471265, overlap 4471260 AGTCGAAAAGAAAAA CAGGCC TTAAT GGCCTG TTTTATTATGCGGAC Shew_3755 4471766 - 4471287 - | thioesterase superfamily protein TERM 4308 4471882 - 4471895 + r 84 -9.5 -4.18018 | opp_overlap 4471882 CCATCCAATAAAAAA GGGCC CTAA GGCCC TTTTCGCTCACAGCA TERM 4309 4471895 - 4471882 - R 100 -9.5 -5.4833 | opp_overlap 4471882 CCATCCAATAAAAAA GGGCC CTAA GGCCC TTTTCGCTCACAGCA Shew_3756 4473449 - 4471917 - | histidine ammonia-lyase TERM 4310 4473409 - 4473429 + g 85 -12.5 -3.79747 | ATGGCTCTTAGCTGT GCCAGGCTC AGG GTGCCTGGC TTTAATACTAGATGA Shew_3757 4475147 - 4473477 - | urocanate hydratase Shew_3758 4475978 - 4475271 - | histidine utilization repressor Shew_3759 4476162 - 4477388 + | imidazolonepropionase TERM 4311 4477407 - 4477425 + F 75 -8.9 -3.61356 | TGTTAGACGCCTGAG CGATGAG GTGTA CTCATCG TTTAGGATGGCTCCT TERM 4312 4477892 - 4477866 - g 88 -13.7 -3.82946 | overlap 4477868 CCACTTCAAACAGAA GACGGCAGGGA GAACT TCCCTGCCGAC CAGCTAGATCGCGCA TERM 4313 4477890 - 4477868 - g 88 -14.9 -3.49634 | overlap 4477866 ACTTCAAACAGAAGA CGGCAGGGA GAACT TCCCTGCCG ACCAGCTAGATCGCG TERM 4314 4479120 - 4479105 - g 72 -2.6 -4.88067 | AGTGACCCAGAAAAA TTAAGT TTCA ACCTAA AGCCGAGTAATTTAT Shew_3760 4477818 - 4479446 + | KAP P-loop domain-containing protein Shew_3761 4480053 - 4479829 - | hypothetical protein TERM 4315 4480100 - 4480088 - H 70 -10.5 -2.54193 | CATCACCTCAAGTTA CGCCC ATC GGGCG CAAATAAACAGCGCC TERM 4316 4480754 - 4480744 - g 73 -5.4 -4.63527 | CTACCACTTTAAAAA CGAT CTT ATCG CCTTCGTGAGCGACC Shew_3762 4480367 - 4481443 + | hypothetical protein Shew_3763 4482005 - 4481475 - | LuxR family transcriptional regulator TERM 4317 4482159 - 4482134 - H 71 -10.5 -2.7056 | opp_overlap 4482132 4482131, overlap 4482127 4482131 4482148 AAAATCAATAAGTTA GCTTATGGTAC ATAT GTACCATAGGC CGCTTTATGATACAT TERM 4318 4482827 - 4482850 + G 71 -7.4 -4.16943 | gap 1, opp_overlap 4482824 4482830 4482832, overlap 4482835 ATCCAGCTCAAACAG CAAC-AGGCCG AGG CGGCCTCGCTG TTTTACCGTCTCACG TERM 4319 4482844 - 4482832 - g 70 -10.5 -3.29837 | opp_overlap 4482827 4482835, overlap 4482830 4482824 GCTCAAACAGCAACA GGCCG AGG CGGCC TCGCTGTTTTACCGT TERM 4320 4483265 - 4483234 - g 83 -14.4 -3.31461 | GACCCAGGCGGAGAA GCTGGCCAAGCAGC AAGA GACGCTCGGCCAGC AGCAGCGACTGCTCA Shew_3764 4482242 - 4483474 + | hypothetical protein Shew_3765 4483471 - 4484511 + | hypothetical protein Shew_3766 4484513 - 4487566 + | CzcA family heavy metal efflux protein Shew_3767 4487563 - 4487868 + | hypothetical protein Shew_3768 4488872 - 4487925 - | hypothetical protein TERM 4321 4488981 - 4488965 - R 85 -9.3 -4.4296 | GAAGACAGAGGAAAA CGCCGCG CCA CGGGGCG AAAACCCAGGCAGGA Shew_3769 4490297 - 4489146 - | hypothetical protein Shew_3770 4491147 - 4490341 - | Sel1 domain-containing protein Shew_3771 4491388 - 4492065 + | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase TERM 4322 4492087 - 4492102 + F 100 -10.4 -5.4505 | opp_overlap 4492087 GCTTTGGAAAATAAA GGCACC CTAG GGTGCC TTTTTTGTTGCCCGC TERM 4323 4492102 - 4492087 - f 91 -10.4 -4.64861 | opp_overlap 4492087 GCTTTGGAAAATAAA GGCACC CTAG GGTGCC TTTTTTGTTGCCCGC Shew_3772 4492259 - 4492687 + | thioesterase superfamily protein Shew_3773 4493745 - 4492705 - | hypothetical protein Shew_3774 4493765 - 4494091 + | acetyltransferase-like Shew_3775 4494501 - 4494097 - | thioesterase superfamily protein TERM 4324 4494613 - 4494646 + r 77 -9.5 -3.695 | opp_overlap 4494616 4494619, overlap 4494604 4494614 4494640 GATACTGGCCCCATA GAATAAGGGCGCCTC TGAT GAGGCGCCCTTAACA TTTAAGCTATTTCGC TERM 4325 4494614 - 4494645 + r 85 -13 -2.81218 | opp_overlap 4494616 4494619, overlap 4494604 4494613 4494640 ATACTGGCCCCATAG AATAAGGGCGCCTC TGAT GAGGCGCCCTTAAC ATTTAAGCTATTTCG TERM 4326 4494643 - 4494616 - R 100 -20 -3.48395 | opp_overlap 4494604 4494614 4494613 4494640, overlap 4494619 ACTGGCCCCATAGAA TAAGGGCGCCTC TGAT GAGGCGCCCTTA ACATTTAAGCTATTT TERM 4327 4494640 - 4494619 - R 100 -17.3 -3.88232 | opp_overlap 4494604 4494614 4494613, overlap 4494616 GGCCCCATAGAATAA GGGCGCCTC TGAT GAGGCGCCC TTAACATTTAAGCTA Shew_3776 4496457 - 4494661 - | AMP-dependent synthetase and ligase TERM 4328 4496570 - 4496531 - R 73 -5.2 -4.61482 | gap 1, overlap 4496533 4496534 4496568 GCGGCCAAAAAATAA GAGTTTT-TGCTCCAATAA TGT TAATTGGAGCACAAAAGCC AGGCGCTAGCAGGAT TERM 4329 4496580 - 4496568 - R 72 -5.5 -4.47328 | overlap 4496531 4496572 AATTGGAGCACAAAA GCCAG GCG CTAGC AGGATCAGGCCAGGG Shew_3777 4497847 - 4496585 - | hypothetical protein TERM 4330 4496656 - 4496645 - G 79 -7.2 -4.57353 | CGTTAGCAGAGAAAA GGCC ACCA GGCC GATATCCAGAGTCAC Shew_3778 4498695 - 4497844 - | ABC transporter-related protein Shew_3779 4499084 - 4498704 - | GntR family transcriptional regulator TERM 4331 4500116 - 4500133 + G 86 -11.3 -4.07124 | GCGCCAAGTTTATGG GCGCCAT CCGT ATGGCGC TTTATATGCCTAATG Shew_3780 4499200 - 4500753 + | TAP domain-containing protein Shew_3781 4500746 - 4501480 + | ABC transporter-related protein TERM 4332 4501878 - 4501857 - g 77 -12.3 -3.28712 | overlap 4501872 4501874 CCGTCGGCTGGAGAA GGCGCTGCA GCAA TACAGCGCC GAGATCGGCAGCCTG Shew_3782 4501477 - 4502613 + | ABC-2 type transporter TERM 4333 4502653 - 4502634 - f 80 -10.6 -3.35798 | ACTTGTCATCGACAA GGGCCGCC ATCG GGTGGCCC TACAAGGAGCATGCT TERM 4334 4502828 - 4502818 - g 74 -6.8 -4.39166 | overlap 4502819 TCTGAGACAGGAAAA CCAG CGA CTGG CCGAGCGCGTCAGCG Shew_3783 4502669 - 4502917 + | hypothetical protein Shew_3784 4503119 - 4503370 + | hypothetical protein TERM 4335 4503403 - 4503371 - T 95 -14.1 -3.2247 | opp_overlap 4503370 4503374, overlap 4503376 AAAGATACCCACTAA CTTAAGACGGGCGCC CTA AGCGCCCGCCTCTAG CTTCCTGCCACCAGT TERM 4336 4503398 - 4503376 - T 95 -14.8 -3.21199 | opp_overlap 4503374 4503370, overlap 4503371 TACCCACTAACTTAA GACGGGCGCC CTA AGCGCCCGCC TCTAGCTTCCTGCCA Shew_3785 4504482 - 4503475 - | AraC family transcriptional regulator Shew_3786 4504608 - 4504787 + | hypothetical protein TERM 4337 4504810 - 4504829 + T 86 -10.6 -3.95986 | opp_overlap 4504799 4504811, overlap 4504811 GCCATGGGCATAAAA AGCCCGGC ATGA GCCGGGCC TTTCCTTGAGTTGAC TERM 4338 4504828 - 4504811 - T 100 -14.1 -4.84359 | opp_overlap 4504810 4504811, overlap 4504799 CCATGGGCATAAAAA GCCCGGC ATGA GCCGGGC CTTTCCTTGAGTTGA TERM 4339 4504811 - 4504828 + T 89 -14.1 -2.97109 | opp_overlap 4504799 4504811, overlap 4504810 CCATGGGCATAAAAA GCCCGGC ATGA GCCGGGC CTTTCCTTGAGTTGA mogA 4505391 - 4504858 - | molybdenum cofactor biosynthesis protein TERM 4340 4505565 - 4505555 - R 76 -8.2 -4.24404 | AGCCAAACGGGAAAA CCGC GGC GCGG ATCAGTGACAGCAGG Shew_3788 4508695 - 4505567 - | multi-sensor hybrid histidine kinase Shew_3789 4509661 - 4508699 - | ABC-type nitrate/sulfonate/bicarbonate transport system protein Shew_3790 4510577 - 4509675 - | response regulator receiver modulated diguanylate cyclase TERM 4341 4510792 - 4510767 - R 76 -10.5 -3.29995 | opp_overlap 4510773, overlap 4510773 GCAAAGGCACAAAAT GAAAAAGGGCC AACA GGCCCTTTTTT TAAATCATGAATGCT TERM 4342 4510773 - 4510786 + r 100 -9.5 -5.48825 | opp_overlap 4510767 4510773 GCACAAAATGAAAAA GGGCC AACA GGCCC TTTTTTTAAATCATG TERM 4343 4510786 - 4510773 - R 93 -9.5 -5.1417 | opp_overlap 4510773, overlap 4510767 GCACAAAATGAAAAA GGGCC AACA GGCCC TTTTTTTAAATCATG Shew_3791 4511463 - 4510807 - | hypothetical protein Shew_3792 4512614 - 4512243 - | hypothetical protein Shew_3793 4513786 - 4512647 - | hypothetical protein TERM 4344 4513598 - 4513576 - G 72 -10.4 -3.42256 | overlap 4513574 4513579 ACTCATGGAAGAACA GCAGGGCGGC GCC GCCGCCCACC CCTACCGCAGGCTCG TERM 4345 4513595 - 4513579 - G 81 -15.1 -2.86259 | overlap 4513576 4513574 CATGGAAGAACAGCA GGGCGGC GCC GCCGCCC ACCCCTACCGCAGGC TERM 4346 4513814 - 4513843 + r 86 -13.1 -2.87132 | gap 1 CGGGAGTTGGGATGA CCTTAGCGA-GAAA CCC TTTCGTCGCTAAGG TCTATGCGGGAAGCG Shew_3794 4514213 - 4513866 - | hypothetical protein TERM 4347 4514070 - 4514102 + g 71 -11.1 -3.05384 | TTCACCACCGTCGGC GATGGCCCCGGCGGC GGT GCCGATGAGGCCACC TTCGATGGCACCGGC TERM 4348 4514345 - 4514324 - R 75 -9.3 -3.57144 | overlap 4514325 GTGGGGATGCGCAAA GCGCGAGGC CTTA GCCCCGCGA CGCGTAGAAAAATTT TERM 4349 4514344 - 4514325 - R 82 -12.8 -2.74144 | overlap 4514324 TGGGGATGCGCAAAG CGCGAGGC CTTA GCCCCGCG ACGCGTAGAAAAATT Shew_3795 4514756 - 4514334 - | transmembrane pair domain-containing protein Shew_3796 4517982 - 4514854 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein Shew_3797 4519119 - 4517989 - | RND family efflux transporter MFP subunit Shew_3798 4520431 - 4519559 - | LysR family transcriptional regulator Shew_3799 4520536 - 4521231 + | hypothetical protein TERM 4350 4521270 - 4521239 - T 87 -11.6 -3.66356 | opp_overlap 4521240 4521244, overlap 4521240 4521244 ACTTCTAAGTCGAAA CGAGACAGCCACCT AATG AGGTGGCTGTTTCT TTATGCGTTGTAAAT TERM 4351 4521269 - 4521240 - T 89 -15.1 -2.79492 | opp_overlap 4521240 4521244, overlap 4521239 4521244 CTTCTAAGTCGAAAC GAGACAGCCACCT AATG AGGTGGCTGTTTC TTTATGCGTTGTAAA TERM 4352 4521240 - 4521269 + T 100 -17.3 -4.00066 | opp_overlap 4521240 4521239 4521244, overlap 4521244 CTTCTAAGTCGAAAC GAGACAGCCACCT AATG AGGTGGCTGTTTC TTTATGCGTTGTAAA TERM 4353 4521265 - 4521244 - T 89 -14.5 -3.02211 | opp_overlap 4521244 4521240, overlap 4521240 4521239 TAAGTCGAAACGAGA CAGCCACCT AATG AGGTGGCTG TTTCTTTATGCGTTG TERM 4354 4521244 - 4521265 + T 100 -14.5 -4.59089 | opp_overlap 4521240 4521239 4521244, overlap 4521240 TAAGTCGAAACGAGA CAGCCACCT AATG AGGTGGCTG TTTCTTTATGCGTTG Shew_3800 4522394 - 4521294 - | hypothetical protein TERM 4355 4522474 - 4522462 - R 87 -7.7 -5.0133 | opp_overlap 4522462, overlap 4522473 GATCTCGCGAAAAAA CCTGT TAA ACAGG TAAGTTACCGCCAGC Shew_3801 4524925 - 4522682 - | peptidase S41 Shew_3802 4526259 - 4525075 - | hypothetical protein TERM 4356 4526367 - 4526338 - R 73 -5.1 -4.72497 | gap 1, overlap 4526339 CACGGATGAAGAAAA TGCCATTTGATGTC GGG AACATCAAA-GGCC TGGACACCGGGGATA TERM 4357 4526366 - 4526339 - R 71 -8.6 -3.42775 | gap 1, overlap 4526338 ACGGATGAAGAAAAT GCCATTTGATGTC GGG AACATCAAA-GGC CTGGACACCGGGGAT TERM 4358 4526462 - 4526480 + r 89 -8.8 -4.76802 | opp_overlap 4526462 TCCATATACAAAAAA GGGCGCTA TTT TAGCACCC TTTGTTATTTTTAGC TERM 4359 4526480 - 4526462 - R 100 -11 -5.4251 | opp_overlap 4526462 TCCATATACAAAAAA GGGCGCTA TTT TAGCACCC TTTGTTATTTTTAGC TERM 4360 4526527 - 4526538 + r 80 -5.8 -5.03994 | CACTATTCGCTGTCA GTCG TCTC CGAC TTTTTCTCTCTCGCC gpsA 4527533 - 4526514 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase Shew_3804 4528028 - 4527540 - | preprotein translocase subunit SecB Shew_3805 4528748 - 4528236 - | rhodanese domain-containing protein TERM 4361 4528600 - 4528586 - G 78 -6.4 -4.7173 | TACTAGACTTAAAAA CGCTCA CAA TAAGCG CAGCAAACAAGCCCA TERM 4362 4530429 - 4530407 - g 71 -8.4 -3.89346 | overlap 4530386 CCTTGATGGGACAAA CCGTGCCATC AGA GATGACAGGG CACTCAATCATTACC Shew_3806 4528912 - 4530456 + | phosphoglyceromutase TERM 4363 4530508 - 4530491 - f 91 -11.3 -3.85698 | opp_overlap 4530491 TCCGGTTTCTATAAA GCCAGCA TACT TGCTGGC TTTATCATGCTCTCT TERM 4364 4530491 - 4530508 + F 91 -11.3 -4.01184 | opp_overlap 4530491 TCCGGTTTCTATAAA GCCAGCA TACT TGCTGGC TTTATCATGCTCTCT Shew_3807 4530515 - 4531600 + | peptidase M23B TERM 4365 4531671 - 4531688 + G 71 -11.3 -3.05765 | TTTCACCTGTGTCGC CCTAGGG CTGA CCCTAGG TCTCTCTATCACCTT Shew_3808 4531636 - 4532841 + | carboxyl-terminal protease TERM 4366 4533430 - 4533414 - g 77 -12.3 -3.27907 | overlap 4533409 TGAGAGACAATTTAA CCAGCTG ATC CAGCTGG CAAACAAGGAGGGGC Shew_3809 4532857 - 4533612 + | protein of unknown function DUF610, YibQ Shew_3810 4534086 - 4533634 - | BadM/Rrf2 family transcriptional regulator Shew_3811 4534351 - 4534097 - | hypothetical protein TERM 4367 4535007 - 4535044 + r 100 -16.5 -4.1552 | gap 1, opp_overlap 4535007 4535015, overlap 4535015 TCAAAAGCTGTTAAA CGAAAAAATCCCCAGCAC GTA GTGCTGGGGATTCTT-CG TTTATTAGGCGCCTG TERM 4368 4535044 - 4535007 - R 100 -18.7 -3.60818 | gap 1, opp_overlap 4535007 4535015, overlap 4535015 TCAAAAGCTGTTAAA CGAAAAAATCCCCAGCAC GTA GTGCTGGGGATTCTT-CG TTTATTAGGCGCCTG TERM 4369 4535015 - 4535037 + r 100 -17.8 -3.96681 | opp_overlap 4535007 4535015, overlap 4535007 TGTTAAACGAAAAAA TCCCCAGCAC GTA GTGCTGGGGA TTCTTCGTTTATTAG TERM 4370 4535037 - 4535015 - R 100 -17.8 -5.37593 | opp_overlap 4535015 4535007, overlap 4535007 TGTTAAACGAAAAAA TCCCCAGCAC GTA GTGCTGGGGA TTCTTCGTTTATTAG TERM 4371 4536380 - 4536391 + r 71 -4.4 -4.7254 | CATCTTGCGATTTTG CACA GTGC TGTG TTTTTGATAAACAGT TERM 4372 4537682 - 4537694 + r 82 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 4373 4540521 - 4540546 + r 70 -10.5 -2.56391 | opp_overlap 4540526, overlap 4540526 TAGGCATTACGTACA AAAAAGGGGCT AAAA AGCCCCTTTTC CTATCTTTCGCTACT TERM 4374 4540526 - 4540541 + r 89 -10.4 -4.46493 | opp_overlap 4540526, overlap 4540521 ATTACGTACAAAAAA GGGGCT AAAA AGCCCC TTTTCCTATCTTTCG TERM 4375 4540541 - 4540526 - R 100 -10.4 -5.28778 | opp_overlap 4540526 4540521 ATTACGTACAAAAAA GGGGCT AAAA AGCCCC TTTTCCTATCTTTCG Shew_3812 4542022 - 4540595 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shew_3813 4542111 - 4542464 + | hypothetical protein TERM 4376 4542471 - 4542517 + F 74 -9.5 -3.34088 | overlap 4542472 4542474 CTCAGATAATCCCTC ATAGGCTACAGAAAGCTTTGC CCAGC GCACGGTTTTCTGCAGCCTAA TTGATCTCTACTCAT TERM 4377 4542472 - 4542516 + F 84 -13 -2.59971 | overlap 4542471 4542474 TCAGATAATCCCTCA TAGGCTACAGAAAGCTTTGC CCAGC GCACGGTTTTCTGCAGCCTA ATTGATCTCTACTCA TERM 4378 4542474 - 4542514 + F 77 -11.2 -2.83613 | overlap 4542472 4542471 AGATAATCCCTCATA GGCTACAGAAAGCTTTGC CCAGC GCACGGTTTTCTGCAGCC TAATTGATCTCTACT TERM 4379 4543109 - 4543094 - g 72 -6.1 -4.46112 | overlap 4543098 CGGTATTTAAACAAA CCGAC CCGGAT GTCGG CAGCTTCGACTCAGG Shew_3814 4542586 - 4543488 + | naphthoate synthase TERM 4380 4543565 - 4543601 + F 75 -9.4 -3.50877 | overlap 4543565 4543566 AAATCATACCTATCG TCCCAGAGTGCCAGTT AAGGC ATCTGTCACTCTGGGC ATTTTTCTCGACTCG TERM 4381 4543565 - 4543602 + F 86 -7.8 -4.85599 | gap 1, overlap 4543565 4543566 AAATCATACCTATCG T-CCCAGAGTGCCAGTT AAGGC ATCTGTCACTCTGGGCA TTTTTCTCGACTCGC TERM 4382 4543566 - 4543600 + F 85 -12.9 -2.70044 | overlap 4543565 4543565 AATCATACCTATCGT CCCAGAGTGCCAGTT AAGGC ATCTGTCACTCTGGG CATTTTTCTCGACTC Shew_3815 4543723 - 4543914 + | hypothetical protein Shew_3816 4544107 - 4544649 + | OmpA domain-containing protein TERM 4383 4544696 - 4544666 - T 100 -9.2 -5.26316 | gap 1, opp_overlap 4544665 4544663 4544666 4544668, overlap 4544654 TCACCCGATAAAAAA TAGGGCAAAC-CT GACAAT AGCGTTTGCCCTA CTATTTATACTAAAT Shew_3817 4545102 - 4544752 - | plastocyanin domain-containing putative protein Shew_3818 4547355 - 4545112 - | copper-translocating P-type ATPase Shew_3819 4547819 - 4547358 - | MerR family transcriptional regulator TERM 4384 4547884 - 4547866 - R 79 -8.9 -3.96148 | TGCCTTGACTATAAA CCTGTGT GTTAG ACACAGG TCAAGGAACTCGAGA TERM 4385 4547946 - 4547965 + r 81 -6.4 -4.95758 | opp_overlap 4547946, overlap 4547940 CAGGCATAAAAAAAA GCAGCC GTTAGAGA GGCTGC TTTTTCTGGTATGGT TERM 4386 4547965 - 4547946 - R 100 -6.4 -5.96219 | opp_overlap 4547946 4547940 CAGGCATAAAAAAAA GCAGCC GTTAGAGA GGCTGC TTTTTCTGGTATGGT Shew_3820 4548615 - 4548184 - | hypothetical protein Shew_3821 4551297 - 4548685 - | hypothetical protein TERM 4387 4549864 - 4549880 + g 79 -10.9 -3.92602 | GTCATGTTCGGTCAC GCCTTCT AAG AGAAGGC TTTGTGACATATTGC Shew_3822 4552284 - 4551316 - | ATPase central domain-containing protein TERM 4388 4552191 - 4552211 + g 73 -5.4 -4.63218 | overlap 4552191 GACGAGCCGAGGCTT CAGCAGCA ATAGC TTCTGCTG TTTTCTTAAAACGAG Shew_3823 4552430 - 4552723 + | XRE family transcriptional regulator Shew_3824 4554352 - 4552754 - | hypothetical protein Shew_3825 4555854 - 4554310 - | transposition protein TERM 4389 4554897 - 4554914 + gr 70 -2.7 -4.79451 | opp_overlap 4554897 TTTGATTTATATAAT GAATAAC TTGA GATATTC TTTTATATTTAGGGT Shew_3826 4557492 - 4555855 - | transposon Tn7 transposition protein TnsC Shew_3827 4559579 - 4557489 - | transposon Tn7 transposition protein TnsB TERM 4390 4559314 - 4559299 - G 83 -4 -5.30155 | TTAGGAAGGAAAAAA TCATCG CTCT CAATGA TTGGGCCAATCAGCT Shew_3828 4560390 - 4559563 - | transposon Tn7 transposition protein TnsA TERM 4391 4559679 - 4559668 - G 81 -4.4 -5.16132 | CATATCAAAATAAAA GCAA CGAT TTGC GAGTAACTGCCTAAT Shew_3829 4560548 - 4560856 + | transposase IS3/IS911 family protein TERM 4392 4561170 - 4561149 - g 80 -5.1 -4.84761 | gap 1 ACATCGCTACAAAAA GGCAGACAAG GAG CATGTC-GCC ATCCCTAACCTCCTT Shew_3830 4560988 - 4561722 + | integrase catalytic subunit TERM 4393 4561944 - 4561954 + F 72 -6.8 -4.27441 | TATTTAAGTTAATGC TGGC TTT GCCA TTTATTCGTCGTCAT TERM 4394 4562165 - 4562184 + F 81 -10.8 -3.5594 | TGCTCCAAATGCCGG TTGGTCTC AGTA GAGACCAA TTTGGAAGCTGAATT Shew_3832 4562232 - 4564238 + | putative hydrolase TERM 4395 4564273 - 4564291 + T 100 -16 -3.05384 | GAAGCTATAGGCTCA GCCCTCCG AAA CGGAGGGC TTCAATAGCAACGCG TERM 4396 4564375 - 4564395 + T 100 -11.9 -4.57474 | opp_overlap 4564377 TTTCTAAGTTGAGAG GAGGATGCA ATT TGCGTCCTC TTTTCTATCGGTTAG TERM 4397 4564876 - 4564859 - T 100 -12.7 -4.74706 | GGCAATATCGAAAAA TGCCGCC ATGC GGCGGCA AGAGCCGTGATAAGC Shew_3835 4565800 - 4565624 - | ISPpu15, transposase Orf2 Shew_3836 4566213 - 4565860 - | IS66 Orf2 family protein TERM 4398 4565947 - 4565961 + g 84 -2.8 -5.48063 | TAAGTCAAATTGAGT CAGG GTGTATA CCTG TTTTTTCTCTTGAGT Shew_3837 4566530 - 4566210 - | hypothetical protein TERM 4399 4566668 - 4566684 + r 75 -9.4 -3.54307 | GAATCTTGGTCCTAT TCCGGG TTATT CCCGGA TTTCAGACAGATCTT Shew_3838 4567667 - 4566687 - | transposase, IS4 family protein TERM 4400 4567015 - 4567003 - G 70 -10.5 -3.28712 | opp_overlap 4567014 TGTGCGCCTTGATAA CCGGC ATC GCCGG AAACGAATTCCTCTT TERM 4401 4567997 - 4568008 + r 72 -7.2 -4.09511 | opp_overlap 4567997 4567987 CACCATTCGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 4402 4568008 - 4567997 - R 82 -7.2 -4.60487 | opp_overlap 4567997, overlap 4567987 CACCATTCGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 4403 4568118 - 4568101 - R 71 -8.5 -3.5332 | overlap 4568097 AAACGCGCAAACTAA TGAGTGT AAAA ACACTCA AAAGCATCTAAATTT TERM 4404 4568423 - 4568400 - R 100 -13.2 -4.14392 | opp_overlap 4568399 4568394 4568390 ACATGTAGATAGAAA TGAGCCTCGC ATTC GCAAGGCTCA ATAATATTTATTTGT TERM 4405 4568899 - 4568929 + r 82 -10.5 -3.87318 | gap 1, opp_overlap 4568900, overlap 4568900 ATTTTCGATTTAGAA ATGGCAGCGTATCG ACTG CGAT-CGCTGCCAC TTTAGTATGATACTT TERM 4406 4568928 - 4568900 - R 100 -14 -3.91897 | gap 1, opp_overlap 4568899 4568900 TTTTCGATTTAGAAA TGGCAGCGTATCG ACTG CGAT-CGCTGCCA CTTTAGTATGATACT TERM 4407 4568900 - 4568928 + r 87 -14 -2.91668 | gap 1, opp_overlap 4568900, overlap 4568899 TTTTCGATTTAGAAA TGGCAGCGTATCG ACTG CGAT-CGCTGCCA CTTTAGTATGATACT Shew_3839 4570855 - 4569026 - | glucosamine--fructose-6-phosphate aminotransferase, isomerizing Shew_3840 4571661 - 4570891 - | DeoR family transcriptional regulator TERM 4408 4571762 - 4571782 + r 100 -15.5 -3.18582 | opp_overlap 4571762 CTAAAAACGCAAAAA GCCGCTATC ACA GATAGCGGC TTAATGAGTGAAATG TERM 4409 4571782 - 4571762 - R 100 -15.5 -4.92239 | opp_overlap 4571762 CTAAAAACGCAAAAA GCCGCTATC ACA GATAGCGGC TTAATGAGTGAAATG Shew_3841 4573945 - 4571807 - | TonB-dependent siderophore receptor TERM 4410 4574119 - 4574135 + r 81 -9.4 -4.0911 | opp_overlap 4574106 4574119, overlap 4574110 ACTCGCATAAAAAAA GCGACC ATAGA GGTCGC TTCTTCTTACTTTTG TERM 4411 4574135 - 4574119 - R 100 -9.4 -5.61596 | opp_overlap 4574110 4574119, overlap 4574106 ACTCGCATAAAAAAA GCGACC ATAGA GGTCGC TTCTTCTTACTTTTG Shew_3842 4575520 - 4574156 - | UDP-N-acetylglucosamine pyrophosphorylase Shew_3843 4575985 - 4575632 - | DsrE family protein TERM 4412 4576128 - 4576106 - R 100 -9 -5.46276 | opp_overlap 4576106 AACAGATACAAAAAA GGCGGTCACC CTA GGGCACCGCC TTTTATCATCAAACA TERM 4413 4576106 - 4576128 + r 88 -9 -4.46212 | opp_overlap 4576106 AACAGATACAAAAAA GGCGGTCACC CTA GGGCACCGCC TTTTATCATCAAACA Shew_3844 4576578 - 4576150 - | F0F1 ATP synthase subunit epsilon Shew_3845 4577988 - 4576612 - | F0F1 ATP synthase subunit beta Shew_3846 4578884 - 4578024 - | F0F1 ATP synthase subunit gamma TERM 4414 4578778 - 4578790 + g 79 -9.1 -4.2828 | GCTGCCATGCGATCC TGCGC CTT GCGCA TTTTGCTGGCTGCAA Shew_3847 4580475 - 4578934 - | F0F1 ATP synthase subunit alpha Shew_3848 4581023 - 4580490 - | F0F1 ATP synthase subunit delta Shew_3849 4581508 - 4581038 - | F0F1 ATP synthase subunit B Shew_3850 4581797 - 4581546 - | F0F1 ATP synthase subunit C Shew_3851 4582662 - 4581868 - | F0F1 ATP synthase subunit A Shew_3852 4583058 - 4582675 - | ATP synthase I chain TERM 4415 4582887 - 4582877 - G 76 -6.8 -4.62069 | overlap 4582878 CCCGTATGGGAAAAA GCGA GGG TCGC GAATACAAAATTAGG Shew_3853 4584162 - 4583284 - | parB-like partition protein Shew_3854 4584961 - 4584173 - | cobyrinic acid a,c-diamide synthase gidB 4585762 - 4585058 - | glucose-inhibited division protein B TERM 4416 4585213 - 4585200 - G 72 -2.3 -4.91712 | TTCAAGGCATAAAAA CAGCC AGTG GGCTT TGGCAGATGGTGGCA Shew_3856 4587673 - 4585784 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 4417 4587847 - 4587862 + r 72 -3.3 -4.95302 | opp_overlap 4587847, overlap 4587835 TAAGATCTTTATATA GATCT TTATAT AGATC TTTTGTTATGTTTAC Shew_3857 4588605 - 4588165 - | flavodoxin Shew_3858 4589518 - 4588736 - | ubiquinone biosynthesis O-methyltransferase Shew_3859 4589730 - 4590698 + | inosine/uridine-preferring nucleoside hydrolase Shew_3860 4591377 - 4590736 - | lysine exporter protein LysE/YggA TERM 4418 4591921 - 4591904 - g 83 -9.1 -4.55697 | opp_overlap 4591904 4591906 ATCTTGATAAAGAAA GAGGGCG TTTT CACCCTC TGCTTAAGCGCAGTT Shew_3861 4591588 - 4592277 + | hypothetical protein TERM 4419 4592819 - 4592843 + F 100 -15.9 -3.56092 | opp_overlap 4592811 AGTATAACTTTTTGG TTTAGATCCCG TCG CGGGATCTAAA TTTAGCAGCTCGTAA TERM 4420 4593003 - 4593032 + F 87 -8.7 -4.47183 | gap 1, opp_overlap 4593002 4593005 4593010, overlap 4593005 4593005 4593010 TTTATGCACCAAAAT GAG-GAAAGATCCC GCT GGGATCTTTCGCTG TTTGTTTAAATAATC TERM 4421 4593029 - 4593005 - f 81 -11.5 -3.14218 | opp_overlap 4593003 4593005 4593005 4593010, overlap 4593002 4593010 TATGCACCAAAATGA GGAAAGATCCC GCT GGGATCTTTCG CTGTTTGTTTAAATA TERM 4422 4593005 - 4593030 + F 91 -11.3 -3.83744 | gap 1, opp_overlap 4593005 4593002 4593010, overlap 4593003 4593005 4593010 TATGCACCAAAATGA G-GAAAGATCCC GCT GGGATCTTTCGC TGTTTGTTTAAATAA TERM 4423 4593005 - 4593029 + F 78 -11.5 -2.89523 | opp_overlap 4593005 4593002 4593010, overlap 4593005 4593003 4593010 TATGCACCAAAATGA GGAAAGATCCC GCT GGGATCTTTCG CTGTTTGTTTAAATA TERM 4424 4593024 - 4593010 - f 82 -10 -3.93659 | opp_overlap 4593005 4593005 4593003 4593010, overlap 4593005 4593002 ACCAAAATGAGGAAA GATCCC GCT GGGATC TTTCGCTGTTTGTTT TERM 4425 4593010 - 4593024 + F 80 -10 -3.85835 | opp_overlap 4593010 4593005 4593002, overlap 4593005 4593005 4593003 ACCAAAATGAGGAAA GATCCC GCT GGGATC TTTCGCTGTTTGTTT Shew_3862 4593900 - 4594484 + | resolvase domain-containing protein TERM 4426 4594604 - 4594624 + G 84 -6.7 -4.87807 | opp_overlap 4594600 GCTTTTAAAGAGTCA CGCTGCACG TGA CGATCAGCG TTTTTACTCTGTTGC TERM 4427 4595458 - 4595472 + G 72 -5.7 -4.44277 | GATCTTGTGAAGACG CAGCT AAAGA AGCTG TTTTGAATTTTAATG TERM 4428 4595513 - 4595494 - g 74 -4.4 -4.74504 | gap 1 ATTTTAATGCAAAAA TAACAAGTG AAA CACT-GTTA AAGGCCTTTTCTAGA Shew_3863 4594563 - 4595552 + | ATPase central domain-containing protein TERM 4429 4598116 - 4598089 - g 74 -4.2 -4.71186 | AGTAGCAATAGAAAA TCAGGTTGAAAT AGAA ATTACAACTTGA AGATTTGCATCAAAA Shew_3864 4595573 - 4598116 + | hypothetical protein trmE 4599795 - 4598434 - | tRNA modification GTPase TrmE TERM 4430 4599875 - 4599850 - R 100 -9.1 -5.1971 | gap 1, opp_overlap 4599850 ATTAAAAAGCAAAAA GCGGTC-AATAC TGA GTATCCGACCGC TTTTTCATTAGTTGG TERM 4431 4599850 - 4599875 + r 82 -6.9 -4.93547 | gap 1, opp_overlap 4599850 ATTAAAAAGCAAAAA GCGGTC-AATAC TGA GTATCCGACCGC TTTTTCATTAGTTGG TERM 4432 4599897 - 4599911 + r 76 -2.8 -5.24129 | overlap 4599898 ATTAGTTGGAGCTAG AGGTTA TTT TAACCC TTTTTTCTCCAAACC Shew_3866 4601528 - 4599900 - | 60 kDa inner membrane insertion protein TERM 4433 4600869 - 4600900 + g 70 -3.1 -4.74215 | gap 2, overlap 4600878 4600880 4600880 CGAGAAGGCGGCGCC GCGATAGGTCGGCAT CATC ATGCTG-CTT-TCGC TTTTCTTGATGCTGT Shew_3867 4601786 - 4601532 - | hypothetical protein Shew_3868 4602115 - 4601753 - | ribonuclease P protein component rpmH 4602262 - 4602125 - | 50S ribosomal protein L34