TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.476625 %AT, 3399713 nt, 29030 terms. Intergenic: 0.530383 %AT, H2T: 745142 nt, 6012 terms; T2T: 270553 nt, 4810 terms; H2H: 315144 nt, 4455 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|82775382|ref|NC_007606.1| Shigella dysenteriae Sd197, complete genome (length 4369232) thrL 190 - 255 + | thr operon leader peptide TERM 1 280 - 301 + F 100 -13 -5.75342 | opp_overlap 280 GAAACACAGAAAAAA GCCCGCAC CTGACA GTGCGGGC TTTTTTTTCGACCAA TERM 2 301 - 280 - f 100 -13.7 -5.51046 | opp_overlap 280 GAAACACAGAAAAAA GCCCGCACC TGAC AGTGCGGGC TTTTTTTTCGACCAA TERM 3 654 - 642 - g 71 -3.4 -4.86731 | TTTGCCCAAATAAAA CATG TCCTG CATG GCATTAGTTTGTTAG TERM 4 2667 - 2654 - g 73 -3.7 -4.81249 | overlap 2655 GTTCAAAGTGAAAAA TGGCG AAAA CGCCC TGGCCTTTTATAGCC thrA 336 - 2798 + | bifunctional aspartokinase I/homeserine dehydrogenase I thrB 2800 - 3732 + | homoserine kinase TERM 5 4449 - 4420 - g 81 -12.9 -2.72661 | gap 1, opp_overlap 4417 TACTACTTTGAAGCA GTTGCGCAGCTGCC GCA GGAAGC-GCGCAAC CAGCTGGTTGTCTCG thrC 3733 - 5019 + | threonine synthase TERM 6 5043 - 5069 + F 91 -8 -5.24129 | gap 1, opp_overlap 5042 CATTATCTCAATCAG GCCGGGTTTGC TTTTAT GCAG-CCCGGC TTTTTTGTGAAGAAA SDY_0005 5233 - 5529 + | hypothetical protein TERM 7 5557 - 5538 - T 73 -7.8 -4.13654 | overlap 5551 CCGCTAAATGACAAA TGCCGGGT AACA ATCCGGCA TTCAGCGCCTGATGC TERM 8 5638 - 5669 + T 70 -10 -3.06133 | opp_overlap 5648 CTGCATGCTTTTGTA GGCCGGATAAGGCG TTCA CGCCGCATCCGGCA TTGACTACAAACTTA yaaA 6458 - 5682 - | hypothetical protein yaaJ 7951 - 6749 - | inner membrane transport protein TERM 9 7720 - 7704 - G 75 -11.5 -3.02144 | CCACCGGCGGTAATA GCCAGCG CAA CGCCGGC CAGGTTGCCGCTACC talB 8230 - 9183 + | transaldolase B TERM 10 9189 - 9220 + F 83 -13 -3.22102 | opp_overlap 9187, overlap 9187 9190 TCTGCTGTAATCATT CTTAGCGTGACCGG GAAG CCGGTCACGCTACC TCTTCTGAAGCCTGT TERM 11 9190 - 9219 + F 95 -16.5 -2.5294 | opp_overlap 9187, overlap 9189 9187 CTGCTGTAATCATTC TTAGCGTGACCGG GAAG CCGGTCACGCTAC CTCTTCTGAAGCCTG mogA 9298 - 9885 + | molybdenum cofactor biosynthesis protein TERM 12 9908 - 9891 - T 100 -12.7 -5.8187 | TAGCGAATAAAAAAA TCCCCCC GAGC GGGGGGA TCTCAAGACAATTAG yaaH 10486 - 9920 - | hypothetical protein TERM 13 10370 - 10360 - G 75 -6.8 -4.36914 | TGCCGCCGTAGAAAA TGCC CAT GGCA AGAATAATACCGTCC SDY_0011 11348 - 10635 - | hypothetical protein TERM 14 10780 - 10740 - G 72 -11.2 -3.07994 | TTTAACCCCATTTAA TGCTGCGC-CCACAGGGCCT CCC AGACCC-GCGCCGCGCAGCA AACCATGCCCAAGCA TERM 15 11102 - 11136 + g 90 -14.4 -2.96274 | opp_overlap 11134, overlap 11096 ATTTACCGTGTCCGC GCAGTTTGTTGGCGAT ACT ATCGCCACCAAAATGC TGTAATTCTCCAGCA TERM 16 11234 - 11246 + g 80 -5.5 -4.93968 | overlap 11225 TCAGTACGCTGGAGA GGCGA GTT TTGCC TTTTTCATTATGGGT yaaI 11733 - 11374 - | hypothetical protein TERM 17 11840 - 11866 + H 75 -3 -5.11112 | TTTACTGCTGATAAA GAGAAGATTCAG GCA CGTAATCTTTTC TTTTTATTACAATTT TERM 18 12855 - 12798 - g 79 -4.1 -5.03314 | gap 1, overlap 12821 TTGACGGCGAAAAAA CCTTCGAAGTCCTGGCAACCAACGGTGA TAC CCACC-TGGGTGGTGAAGACTTCGACAG CCGTCTGATCAACTA dnaK 12155 - 14071 + | molecular chaperone DnaK TERM 19 14135 - 14096 - f 84 -13.6 -2.91467 | gap 1, opp_overlap 14097 AAACGGGTAATTATA CTGACACGGGCGAAGGGGA ATT TCCTCTCCGCCCGTG-CAT TCATCTAGGGGCAAT TERM 20 14097 - 14134 + F 100 -17.1 -3.25823 | gap 1, opp_overlap 14096 AACGGGTAATTATAC TGACACGGGCGAAGGGGA ATT TCCTCTCCGCCCGTG-CA TTCATCTAGGGGCAA TERM 21 14241 - 14228 - g 71 -2.3 -4.98531 | GCGTGAAATCAAAAA GGCCT ACAA ACGCC TGGCCATGAAATACC TERM 22 15235 - 15245 + G 70 -6.8 -4.03811 | overlap 15237 AGCACAACAGCCCGC GCTC AAA GAGC TTCTTTGATGGTGTG dnaJ 14160 - 15290 + | chaperone protein DnaJ TERM 23 15319 - 15302 - T 95 -12.7 -4.09739 | CTAACCTCCCCAAAA GCCTGCC CGTG GGCAGGC CTGGGTAAAAATAGG TERM 24 15366 - 15387 + T 90 -13.7 -3.39449 | opp_overlap 15365 15366, overlap 15367 CGAGCACCTGTAAAG TGGCGGGGA TCAC TCCCCGCCG TTGCTCTTACTCGGA TERM 25 15387 - 15366 - T 73 -11.5 -2.74792 | opp_overlap 15366 15367, overlap 15365 CGAGCACCTGTAAAG TGGCGGGGA TCAC TCCCCGCCG TTGCTCTTACTCGGA TERM 26 15367 - 15386 + T 90 -15 -2.63348 | opp_overlap 15366 15365, overlap 15366 GAGCACCTGTAAAGT GGCGGGGA TCAC TCCCCGCC GTTGCTCTTACTCGG gef 15603 - 15394 - | Gef TERM 27 15611 - 15643 + r 72 -4.9 -4.64844 | gap 1, opp_overlap 15579 TTCAGCATATAGGGG GCCTCGGGTTGATG GTAAAA TATC-ACTCGGGGC TTTTCTCTATCTGCC SDY_0016 16080 - 15865 - | iso-IS1 ORF2 SDY_0017 16259 - 16077 - | iso-IS1 ORF2 TERM 28 16937 - 16950 + G 70 -6.7 -4.06611 | overlap 16934 ATTCTTTAGCAGTGA TGCCT CGGG AGGCA TTATTCTTATCATTG nhaA 16905 - 18071 + | pH-dependent sodium/proton antiporter TERM 29 18087 - 18106 + F 93 -10.7 -4.59414 | CAGGACGGTTTACCG GGGAGCC ATAAAC GGCTCCC TTTTCATTGTTATCA nhaR 18131 - 19036 + | transcriptional activator NhaR SDY_0020 19601 - 19074 - | hypothetical protein SDY_0021 19816 - 19592 - | hypothetical protein SDY_0022 20011 - 20406 + | iso-IS1 ORF2 insB 20889 - 20512 - | IS1 ORF2 insA 21209 - 20934 - | IS1 ORF1 TERM 30 21563 - 21551 - H 76 -7.7 -4.258 | GGATTCATTAAGAAA GGTGA TTA TCACC ATGCGAATTAACGAA TERM 31 21906 - 21895 - g 77 -7.2 -4.57837 | overlap 21896 21897 AGAGCTGCTGAAAAA CCCG CCCG CGGG CGAAGAAGAATTCCT acnB 21788 - 24385 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 32 24446 - 24421 - f 93 -12.7 -3.66897 | gap 1, opp_overlap 24421, overlap 24413 GCATAAACGACATAA TGCCCGGTGAAT GAG ATTC-CCGGGCA TTTTTTATTTCTAAA TERM 33 24421 - 24446 + F 100 -12.7 -5.72622 | gap 1, opp_overlap 24421 24413 GCATAAACGACATAA TGCCCGGTGAAT GAG ATTC-CCGGGCA TTTTTTATTTCTAAA yacL 24560 - 24922 + | hypothetical protein TERM 34 24955 - 24928 - T 100 -12 -4.59982 | GCAGAAGTAAATAAA TCTGGCTGAGCC TGGG AGCTCCGCCAGA GCCGTTAAACAGCTG speD 25754 - 24960 - | S-adenosylmethionine decarboxylase speE 26636 - 25770 - | spermidine synthase TERM 35 26718 - 26693 - R 74 -10.5 -3.24255 | opp_overlap 26693 26695, overlap 26686 26695 CAACATAATAGCTAA CATTGACCGCG GATG CACGGTCAATA TTTCTACAAAAAGGT TERM 36 26716 - 26695 - R 77 -10.9 -3.17362 | opp_overlap 26695 26693, overlap 26693 26686 ACATAATAGCTAACA TTGACCGCG GATG CACGGTCAA TATTTCTACAAAAAG yacC 27212 - 26742 - | hypothetical protein TERM 37 27209 - 27219 + g 76 -4 -4.88918 | GGGGAAGGACTATGC TCAA CGT TTGA TTTTGTTTCGCCTGC TERM 38 28640 - 28628 - g 70 -5.5 -4.3739 | overlap 28635 TATCTTGTCAGAAAA TGGCA AAC CGCCA GCGGCTCATCGCGCG yacK 27255 - 28805 + | multicopper oxidase TERM 39 28847 - 28824 - f 82 -11 -3.57462 | opp_overlap 28821 28826, overlap 28826 GACCGTATTCGGAAA TATGCCCGGA TCTC TCCGGGCATT ATGGTTATTTCACAT TERM 40 28826 - 28845 + F 93 -13.6 -3.65135 | opp_overlap 28824 28826, overlap 28821 CCGTATTCGGAAATA TGCCCGGA TCTC TCCGGGCA TTATGGTTATTTCAC TERM 41 28845 - 28826 - f 90 -13.6 -3.36515 | opp_overlap 28826 28821, overlap 28824 CCGTATTCGGAAATA TGCCCGGA TCTC TCCGGGCA TTATGGTTATTTCAC TERM 42 29496 - 29478 - f 79 -11 -3.40597 | overlap 29476 CGCCCCATTCAAACA TTCCCAGG TTA CCCGGGAA GACCAGCGTGCCCTG insA 29799 - 30074 + | IS1 ORF1 insB 30119 - 30496 + | IS1 ORF2 TERM 43 31179 - 31189 + F 76 -8.2 -4.15328 | overlap 31180 31186 ATCCGCCATCACTTC CGGC GAA GCCG TTTCTGCTTTGGCTT hpt 32224 - 32760 + | hypoxanthine phosphoribosyltransferase TERM 44 32764 - 32797 + T 79 -3.1 -5.4182 | gap 1, overlap 32767 32768 CTGGACGAGTAAGTG TGAAGTTGCCGGATGT GTT GCATCCGGCA-TGGCA TTTTTATTTGTGGTT yadF 33463 - 32801 - | carbonic anhydrase TERM 45 34086 - 34102 + G 70 -3.5 -4.60924 | TGGATATTGAACTTC GCCGCTC AAT GTGGGGC TTTTTGAAGGATTTA yadG 33572 - 34498 + | putative ATP-binding component of a transport system yadH 34495 - 35265 + | hypothetical protein TERM 46 35272 - 35301 + F 79 -9.3 -4.10657 | overlap 35273 CGTAGCTAAGGCTAT TTCCTCTCCTCTG GATT TGGGGGAGAGGAG TTTTGACGGCTATCA TERM 47 35273 - 35300 + F 73 -10.6 -3.06073 | overlap 35272 GTAGCTAAGGCTATT TCCTCTCCTCTG GATT TGGGGGAGAGGA GTTTTGACGGCTATC yadI 35370 - 35810 + | putative PTS enzyme II B component SDY_0039 35874 - 36287 + | hypothetical protein yadE 36265 - 37104 + | hypothetical protein panD 37488 - 37108 - | aspartate alpha-decarboxylase TERM 48 37187 - 37171 - G 73 -9.4 -3.63744 | opp_overlap 37155 37181, overlap 37169 GTCGCCTTCAAAATA GGCGAC GTTGG GTCGCC AGGTGCGAGCTTCTT TERM 49 37535 - 37521 - H 79 -11.4 -3.33696 | opp_overlap 37521 CCTGTCGTTAACGAA GCAGGC GGT GCCTGC TTTGAGGAAATTCTC TERM 50 37521 - 37535 + H 82 -11.4 -3.56099 | opp_overlap 37521 CCTGTCGTTAACGAA GCAGGC GGT GCCTGC TTTGAGGAAATTCTC yadD 37762 - 38562 + | hypothetical protein insA 38591 - 38866 + | IS1 ORF1 insB 38911 - 39288 + | IS1 ORF2 TERM 51 39559 - 39574 + T 74 -6 -4.57341 | opp_overlap 39560, overlap 39560 AGCAGGCATAAAAAA ACCCGC TTGC GCGGGC TTTTTCACAAAGCTT TERM 52 39573 - 39560 - T 100 -9.5 -5.64274 | opp_overlap 39559 39560 GCAGGCATAAAAAAA CCCGC TTGC GCGGG CTTTTTCACAAAGCT TERM 53 39560 - 39573 + T 73 -9.5 -3.33922 | opp_overlap 39560, overlap 39559 GCAGGCATAAAAAAA CCCGC TTGC GCGGG CTTTTTCACAAAGCT TERM 54 39589 - 39620 + T 72 -10.3 -2.89683 | opp_overlap 39598, overlap 39593 39597 CTTTTTCACAAAGCT TCAGCAAATTGGC GATTAA GCCAGTTTGTTGA TCTGTGCAGTCAGGT rpsT 39867 - 39604 - | 30S ribosomal protein S20 SDY_0046 39970 - 40188 + | hypothetical protein TERM 55 41087 - 41075 - g 76 -9.1 -3.78329 | CTGGACGAACTGAAA GCGCA GAT TGCGC GTGATGAATTAACCG ribF 40196 - 41137 + | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 56 41346 - 41328 - g 100 -3.1 -5.63857 | AAAAAGGCAAAAAAA CCTTCAT TCTGC ATGATGG CCCTCCTTATGCGAA TERM 57 42335 - 42314 - g 71 -9.5 -3.55622 | gap 1 GTGAACGTCTTCAAA GCG-AACGAC ATC GTCGTTGCGC TGCTGCAGGAAAAAG TERM 58 42398 - 42375 - g 81 -8.8 -4.38712 | overlap 42376 TGCACGTTGAGAAAA TGCAGCACAG CTAT CCGTGCTGCT GGCGTCACAAAACGC TERM 59 42397 - 42376 - g 81 -12.3 -3.22906 | overlap 42375 GCACGTTGAGAAAAT GCAGCACAG CTAT CCGTGCTGC TGGCGTCACAAAACG TERM 60 43829 - 43804 - g 71 -10.5 -2.88069 | gap 1, overlap 43801 TGCAGACTATAACGA CGCACCTGCTGA TGC TCAGCAGA-GCG AAGTACTCAAAGGGC ileS 41180 - 43996 + | isoleucyl-tRNA synthetase TERM 61 44113 - 44079 - g 71 -9.2 -3.44848 | opp_overlap 44103, overlap 44077 TCTGGGCAGCAAATA CCTGATCCTCCAGAAC TTT GCTCTGGGGGATACGG TCCCGCTGTTCCCGT lspA 43996 - 44490 + | lipoprotein signal peptidase TERM 62 44550 - 44495 - f 100 -15.6 -4.68451 | gap 1, overlap 44496 44497 AAAAACAATAATAAA CCCTGCCGGATAAGGCCTACAGATTGC TGC GAAATC-GTAGGCCGCATCCGGCAAAA ATCCTCAAAATATAA TERM 63 44549 - 44496 - f 100 -16.9 -3.37411 | gap 1, overlap 44495 44497 AAAACAATAATAAAC CCTGCCGGATAAGGCCTACAGATTGC TGC GAAATC-GTAGGCCGCATCCGGCAAA AATCCTCAAAATATA TERM 64 44548 - 44497 - f 100 -18.2 -2.60006 | gap 1, overlap 44496 44495 AAACAATAATAAACC CTGCCGGATAAGGCCTACAGATTGC TGC GAAATC-GTAGGCCGCATCCGGCAA AAATCCTCAAAATAT TERM 65 44655 - 44632 - g 88 -11 -4.14243 | CACTTCACGCTAAAA CTCGACGATG GCAC CACCGCCGAG TCTACCCGCAACAAC slpA 44578 - 45027 + | FKBX-type 16KD peptidyl-prolyl cis-trans isomerase ispH 45029 - 45979 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 66 46008 - 46027 + F 100 -9.3 -5.24129 | opp_overlap 46008, overlap 46025 TAAGTTATGCGAAAA TGCCGGT CTTGTT ACCGGCA TTTTTTATGGAGAAA TERM 67 46027 - 46008 - f 79 -9.3 -4.15453 | opp_overlap 46008 46025 TAAGTTATGCGAAAA TGCCGGT CTTGTT ACCGGCA TTTTTTATGGAGAAA yaaF 46045 - 46959 + | ribonucleoside hydrolase RihC dapB 47126 - 47947 + | dihydrodipicolinate reductase TERM 68 48003 - 48021 + F 82 -3.1 -5.61277 | opp_overlap 48003 TTTATTGAATATAAA GGGCT TTAATTTTT AGCCC TTTTATTTTTTTGTG TERM 69 49331 - 49313 - g 71 -3 -4.84761 | overlap 49314 AGATGTGGAGAAAAA CGTGGTGA TGA TCACCGCC CAGAACCATGGTTTT carA 48405 - 49553 + | carbamoyl phosphate synthase small subunit TERM 70 52155 - 52136 - g 71 -9.2 -3.53012 | CCGTTCGTCTCCAAA GCCACCGG CGTA CCGCTGGC AAAAGTGGCGGCGCG carB 49571 - 52792 + | carbamoyl phosphate synthase large subunit TERM 71 52846 - 52865 + F 100 -10 -5.77853 | opp_overlap 52844 52846 ATCGAATAACTAATA CGGTTCTC TGAT GAGGACCG TTTTTTTTGCCCATT caiF 53053 - 53409 + | DNA-binding transcriptional activator CaiF TERM 72 53557 - 53579 + T 79 -8.4 -4.33165 | overlap 53572 TAGGCGTCACATCCG TCGTCCCC TGCAAAC GGGGGCGA TTTTCCTCCATTTGC caiE 54145 - 53534 - | carnitine operon protein CaiE caiD 55023 - 54130 - | carnitinyl-CoA dehydratase TERM 73 54997 - 55017 + g 85 -10.4 -4.27211 | overlap 54992 54998 AGCGTGATTATTAGC TGGCAGGG TAGTT CCCTGCCG TTTCATTTATTTCAG TERM 74 54998 - 55016 + g 77 -11.7 -3.15242 | overlap 54997 54992 GCGTGATTATTAGCT GGCAGGG TAGTT CCCTGCC GTTTCATTTATTTCA caiC 56592 - 55024 - | putative crotonobetaine/carnitine-CoA ligase TERM 75 55655 - 55636 - G 70 -10 -3.19003 | opp_overlap 55648, overlap 55625 ATAAGACGTCAGCAA GCGAACGC CGAA GCGTTCAC AAAATGCGTCTTTTT TERM 76 56481 - 56507 + g 75 -7.2 -4.38712 | ACCGGTTAACGACTC CGCCGCTGGATT CAC AAATCAGCGCCG TTTTATGACCGTAAA caiB 57868 - 56651 - | crotonobetainyl-CoA:carnitine CoA-transferase caiA 59139 - 57997 - | crotonobetainyl-CoA dehydrogenase TERM 77 58277 - 58293 + g 73 -3.6 -4.7497 | overlap 58278 ATGGAGTTTAATTTG ATCGCC ATGTG GGCGAA TTTTTCCTGAATCAA caiT 60684 - 59170 - | L-carnitine/gamma-butyrobetaine antiporter TERM 78 60824 - 60839 + H 83 -4 -5.28942 | CAATAAGTTGTGCTC TGTGAT TGGT GTCACA TTTTTGTTTCGGGTG TERM 79 60990 - 61026 + H 73 -9.7 -3.35695 | overlap 60984 TTTTGCTACGCCATG TTTTCAATATTGGTGAG GAA CTTAACAATATTGAAAG TTGGATTTATCTGCG fixA 61156 - 61926 + | putative electron transfer flavoprotein FixA fixB 61941 - 62882 + | putative electron transfer flavoprotein FixB fixC 63169 - 64218 + | hypothetical protein fixX 64215 - 64502 + | putative ferredoxin TERM 80 64826 - 64862 + G 77 -7.3 -4.49556 | opp_overlap 64831, overlap 64828 64832 AATGTTCCTCATTGA TATCATCGCCATCGG CGTGATA TCGGTGGCGACGATG TTTGTTTCATCCCCC yaaU 64560 - 65480 + | putative transport protein SDY_0068 65490 - 65723 + | hypothetical protein yabF 66002 - 66532 + | glutathione-regulated potassium-efflux system ancillary protein KefF kefC 66525 - 68192 + | K+ efflux antiporter, glutathione-regulated folA 68384 - 68863 + | dihydrofolate reductase TERM 81 69060 - 69034 - g 83 -12.3 -3.36694 | overlap 69032 ATGCAGGCTTAAATA TGAGCGCCACC CTTAC GGTTGCGCTCA ATGCTGAACTTAAAA SDY_0072 68949 - 69182 + | putative antitoxin of gyrase inhibiting toxin-antitoxin system TERM 82 69448 - 69415 - g 72 -10.9 -3.05715 | AACTGTCCCAGTTAA CGCGCTGGGAACGAA ATTT TGCGATGCCAGCGCG CACCGAACGTTGATT SDY_0073 69185 - 69499 + | putative toxin of gyrase inhibiting toxin-antitoxin system apaH 70344 - 69496 - | diadenosine tetraphosphatase apaG 70728 - 70351 - | ApaG TERM 83 70439 - 70460 + g 72 -8.7 -3.71527 | gap 1, overlap 70452 ATCATTTCGTAGTGA CCCTGCATGG TGC CCA-GCGGGG TTTCAATGATTGCAC TERM 84 70530 - 70512 - G 76 -11 -3.30124 | opp_overlap 70512 70498 CGCCAGGCGCGATAA GTGGCTGG ACG CCAACCAC TCCTTCGCCCTGGAC ksgA 71552 - 70731 - | dimethyladenosine transferase pdxA 72538 - 71549 - | 4-hydroxythreonine-4-phosphate dehydrogenase surA 73824 - 72538 - | peptidyl-prolyl cis-trans isomerase SurA imp 76231 - 73877 - | organic solvent tolerance protein TERM 85 75729 - 75752 + g 70 -6.8 -4.10007 | gap 1, opp_overlap 75719 75729, overlap 75719 CAGGAGGTAAAGCTA CCGTTAT-CCA GAA TGGTATAGCGG TTTTCGCCACGTTGT TERM 86 76621 - 76607 - g 70 -7.1 -4.11216 | CCCGTAGCCGTAAAA TGGCG TGGTT CGCCA ACCAGCGTGAGCGTC TERM 87 76624 - 76644 + G 74 -3.1 -5.00884 | opp_overlap 76626, overlap 76632 GCGTGGTTCGCCAAC CAGCGTGAG CGT CAGGCGCTG TTTTTTGCCACCACT djlA 76486 - 77301 + | DNA-J like membrane chaperone protein TERM 88 77340 - 77359 + F 87 -11.4 -3.90744 | opp_overlap 77339 77340 TGCCCACGATTAAAG GTGGCCGC CTTG GCGGTCAC TTCTTTGAGAAAAGG yabP 77596 - 78312 + | hypothetical protein TERM 89 78353 - 78313 - T 100 -21.3 -3.83226 | AATGATCCAGAATAA GCTAAGGTTGAAGGGGTAG GAA CGGCCCCTTCAACCTTAGC AGTAGCGTAGGATGA TERM 90 78651 - 78666 + T 87 -10.4 -4.03234 | opp_overlap 78651 GGCAGAAACAAAAAA TCCCCG GACT CGGGGA TTTATGTACAAGAGG TERM 91 78666 - 78651 - T 100 -10.4 -5.72622 | opp_overlap 78651 GGCAGAAACAAAAAA TCCCCG GACT CGGGGA TTTATGTACAAGAGG yabO 79378 - 78719 - | 23S rRNA/tRNA pseudouridine synthase A TERM 92 79060 - 79036 - G 71 -10.7 -2.91695 | overlap 79033 79053 GCCAGTCGCAAATCA GCGGCAGATCT ACC AGACCTTCCGC AGGGGATGGATGCCC TERM 93 79111 - 79147 + g 72 -8.6 -3.72576 | gap 1, overlap 79113 GCTTTTTCGGCTCGC GCTCGCGGAACTGGCGT TTTA ACTCCCGCTCCGCG-GC TTTGGTCAGCGCCAC hepA 82296 - 79390 - | ATP-dependent helicase HepA TERM 94 79439 - 79451 + g 76 -9.1 -3.77219 | TCCAGACGCCAGCCT GCCTG ATC CAGGC TTTCCATTACCTGCT TERM 95 79857 - 79875 + g 78 -5.3 -4.85782 | gap 1, opp_overlap 79857 79855 TCAGTTCCACCAACA GCG-TACC TACC GGTAACGC TTTGTTTTTCAACAG TERM 96 81158 - 81182 + g 70 -10 -3.16944 | overlap 81156 AGCGGCTCGATATCC TGCTCGCCGA TCATC TCGCCGAGCA TGTTCAGTTCGTCAT TERM 97 82526 - 82515 - R 74 -5.8 -4.64676 | overlap 82516 TTATCCTCAATAAAA GGGA GTAT TCCC TCCGCCACGGGTTGT TERM 98 83616 - 83581 - R 73 -7.5 -4.06904 | overlap 83606 GCACCGAATCATAAA GCCCTGGCTGCGA ATCCATCACA TAGCCGCCAGGGC TGGCGTGCGGCGGCA TERM 99 83735 - 83709 - R 70 -10.1 -3.05715 | gap 1, opp_overlap 83710, overlap 83697 83696 AACGCCGCCACTGAA CCGCCGTGCCGG TCCA CCGGCA-GGCCG TTTACCGTTGCTCGT TERM 100 83710 - 83735 + r 83 -10.3 -3.68244 | opp_overlap 83697 83696 83709 ACGCCGCCACTGAAC CGCCGTGCCGG TCCA CCGGCAGGCCG TTTACCGTTGCTCGT SDY_0084 84332 - 83937 - | iso-IS1 ORF2 insA 85070 - 85345 + | IS1 ORF1 insB 85390 - 85767 + | IS1 ORF2 TERM 101 86383 - 86403 + T 76 -8.3 -4.14598 | opp_overlap 86383 AAATCCATCAAAAAA CCAGGCT TGATTAT AGCCTGG TTTCATTTGATTGGC TERM 102 86403 - 86383 - T 100 -8.3 -5.19261 | opp_overlap 86383 AAATCCATCAAAAAA CCAGGCT TGATTAT AGCCTGG TTTCATTTGATTGGC araD 87132 - 86437 - | L-ribulose-5-phosphate 4-epimerase TERM 103 87245 - 87278 + r 70 -9.5 -3.08464 | opp_overlap 87233 87255 87257, overlap 87266 AAATCGGAACGTGTA GGCCTGATAAGACGC GCCA GCGTCGCATCAGGCG TTACATACCTGATGC TERM 104 87266 - 87296 + r 78 -12.6 -2.70932 | opp_overlap 87255 87233 87257, overlap 87245 ATAAGACGCGCCAGC GTCGCATCAGGCGT TAC ATACCTGATGCGGC TACTTAGCGACGAAA araA 88802 - 87300 - | L-arabinose isomerase araB 90513 - 88813 - | ribulokinase TERM 105 89128 - 89152 + g 77 -9.9 -3.61715 | GACCTGGTTTTTCCG CGCGATGCCGC CCA GCGCCATCACG TTATTAACGGCGATC TERM 106 89875 - 89852 - G 72 -5.3 -4.49958 | gap 2, opp_overlap 89855, overlap 89854 AGCTCATCAAAGAAA CTGGCTGGCGG CAGG CCGCC--CCAG CTTTCGTGCCATAGC TERM 107 90622 - 90608 - H 82 -7.2 -4.87665 | TCTTATGGATAAAAA TGCTAT GGC ATAGCA AAGTGTGACGCCGTG TERM 108 92257 - 92278 + G 85 -8.6 -4.45544 | opp_overlap 92256 CACGCCGAATATTAT CGGCTGCC TGCTGT GGCCGCCG TTTTACTTCCTGCCG yabI 91820 - 92584 + | hypothetical protein TERM 109 92672 - 92646 - T 75 -6.5 -4.3898 | overlap 92669 ATCAGGCCTACAAAA CGCACTACCCG TAGGT CGGATAAGGCG TTCACGCCGCATCCG thiQ 93396 - 92698 - | thiamine transporter ATP-binding subunit thiP 94990 - 93380 - | thiamine transporter membrane protein TERM 110 93470 - 93458 - G 78 -10.5 -3.48036 | TAGCAGCAGAATTAA CGCGG TGA CCGCG CCGTCCTGGCTGCGA TERM 111 94479 - 94446 - G 81 -4.3 -5.10029 | opp_overlap 94471, overlap 94447 ACGAAGCGGAAAAAA TGCCAGCCGCGCATC CCAA GCTGGGCGGCAAGCT GACGTTGTTCGCCGG TERM 112 94937 - 94901 - G 74 -8.6 -3.88787 | gap 1, overlap 94891 CCACAGGGCGAGAAA CGCCGCCAGCGCAACCG CTAC CACCAGCG-TGGCGGCG CTTACACCTAGAATT tbpA 95949 - 94966 - | thiamine transporter substrate binding subunit TERM 113 95813 - 95823 + g 74 -3.2 -5.00616 | TCGCAATTACAGTCG GCTT CAA AGGC TTTTTTAACCACCGG insA 96924 - 96649 - | IS1 ORF1 TERM 114 97308 - 97323 + r 73 -7.5 -4.11363 | opp_overlap 97308 97306 TCAGAATATGAAAGA GGGGC TGGAAT GCCCC TTCTTTAATCTTATT yabN 99105 - 97447 - | transcriptional regulator SgrR TERM 115 98576 - 98564 - G 71 -2.6 -4.89063 | GGACGCAAAAAGAAA CGCC AGTGA AGCG GTGATATTTGCTGCC TERM 116 99370 - 99392 + r 100 -10.6 -5.93252 | GGTGTTAATCGCCAC GCCAGCAG TGATTAT CTGCTGGC TTTTTTCTTTTTGGC leuD 100038 - 99433 - | isopropylmalate isomerase small subunit TERM 117 99869 - 99879 + g 72 -4.6 -4.72272 | ACGAAGTCCGGGTTT GGCT GTT GGCC TTTTTCATCCAGAAA leuC 101449 - 100049 - | isopropylmalate isomerase large subunit TERM 118 100968 - 100980 + g 76 -9.1 -3.75629 | ATGGTCTTTGCGCGG CCCTG TTT CAGGG TTTGCGTTGCCAGTA leuB 102543 - 101452 - | 3-isopropylmalate dehydrogenase leuA 104114 - 102543 - | 2-isopropylmalate synthase TERM 119 103248 - 103259 + g 72 -5.8 -4.41616 | TGCGAATGCGCCGCT GCCA ACAA TGGC TTTGTTTGCCGGGAT TERM 120 104182 - 104165 - R 100 -14.1 -5.60993 | opp_overlap 104165 TCGGGCATAAAAAAA CCCGCGC AATG GCGCGGG TTTTTTGTTTGACTG TERM 121 104165 - 104182 + r 100 -14.1 -5.65927 | opp_overlap 104165 TCGGGCATAAAAAAA CCCGCGC AATG GCGCGGG TTTTTTGTTTGACTG leuL 104290 - 104207 - | leu operon leader peptide SDY_0103 104941 - 105156 + | iso-IS1 ORF2 insB 105781 - 105404 - | IS1 ORF2 insA 106101 - 105826 - | IS1 ORF1 TERM 122 106242 - 106254 + H 83 -6.3 -5.08824 | AGATCGGACGGTTAA TGTGT TTT ACACA TTTTTTCCGTCAAAC TERM 123 107596 - 107586 - g 70 -6.8 -4.07885 | CACTGGGCGTCAAAA TGGC GTT GCCA GAAGAAACCGTGGTT ilvI 106283 - 108007 + | acetolactate synthase 3 catalytic subunit ilvH 108010 - 108501 + | acetolactate synthase 3 regulatory subunit TERM 124 108527 - 108547 + G 100 -9.7 -5.41143 | opp_overlap 108525 AATGCGCAATTTACA GCCCAACAT GTC ACGTTGGGC TTTTTTTGCGAAATC fruL 108513 - 108599 + | fruR leader peptide fruR 108681 - 109685 + | DNA-binding transcriptional regulator FruR TERM 125 109731 - 109700 - f 100 -12.4 -5.06816 | gap 1 AGCTGCGAACAAAAA TACGTGCCAG-GTGA ATT TCACTCTGGCGCGTA GAGTACGGGACTGGA yabB 110288 - 110746 + | cell division protein MraZ TERM 126 110987 - 111015 + G 76 -12.4 -2.52623 | overlap 110986 CCACGGACCTTTTTC CGCGCTGGGCGA ATACG TTGCCGAGCGCG ATCTTATCGGCAAGA TERM 127 111081 - 111092 + G 70 -3.6 -4.61873 | CCGCAACTTGATGAT GCTG AACG CGGC TTTTCCTTTATGCGC mraW 110748 - 111689 + | S-adenosyl-methyltransferase MraW TERM 128 112010 - 111997 - g 76 -8.1 -4.18494 | opp_overlap 111996 111994 GATCGCCACGGAAAA GCTGC AAAT GCAGC ATGTTGATCCGTCAC ftsL 111686 - 112051 + | cell division protein FtsL TERM 129 112114 - 112134 + G 78 -7.6 -4.37734 | opp_overlap 112112 112114 112115, overlap 112115 ACGTCAGGAAGAACA TGCCAACT TTATC AGTTGGCG TTTTGCGTTGTTATG TERM 130 113633 - 113654 + G 72 -8.7 -3.7941 | gap 1, overlap 113636 GTTGCACCTGCGAGT CAGCC-GCGC TTC GCGCTGGTTG TTGTTATCAACGATC TERM 131 113636 - 113651 + G 70 -6.8 -4.02817 | gap 1, overlap 113633 GCACCTGCGAGTCAG CC-GCGC TTC GCGCTGG TTGTTGTTATCAACG TERM 132 113692 - 113710 + G 73 -11.6 -2.67171 | opp_overlap 113689 113686, overlap 113689 113691 113690 113706 GGGTAAATACTACGG CGGCGCCG TTT CCGCGCCG GTCTTTGGTGCCATC ftsI 112067 - 113833 + | penicillin-binding protein 3 TERM 133 114931 - 114921 - g 81 -6.8 -4.62783 | overlap 114922 GATGCACTGGAAAAA GCCT TAC AGGC GGCGCGCCTGCACTG murE 113820 - 115307 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 134 115744 - 115705 - g 75 -11.4 -3.07443 | opp_overlap 115713, overlap 115714 TTATACGGCAGGCAA TCTCAACAACGACATCGG TGTA CCGATGACGCTGTTGCGC TTAACGCCAGAATAC TERM 135 115735 - 115714 - g 77 -10.1 -3.6849 | opp_overlap 115713, overlap 115705 AGGCAATCTCAACAA CGACATCGG TGTA CCGATGACG CTGTTGCGCTTAACG TERM 136 116502 - 116484 - g 70 -5.2 -4.41348 | opp_overlap 116498, overlap 116488 GCGTGGGTAAACAAA GCCATGCT ATC AGCACCGC CAGCGGCGTTGGCGA murF 115304 - 116662 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 137 117249 - 117271 + G 74 -9.9 -3.5241 | gap 1, opp_overlap 117231, overlap 117247 GACCGATGGTCTTGA CGGTCTGGCA ATTA TGCC-GACCG TATTTGTCGCCGGTG mraY 116656 - 117738 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 138 117820 - 117840 + G 72 -10.3 -3.35996 | TGGACTTTTTCCTCG CTCGCGGTG TGA CGCCGCGCG TTATGGATACGCGTA murD 117741 - 119057 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase ftsW 119057 - 120301 + | cell division protein FtsW TERM 139 120545 - 120511 - g 70 -4.3 -4.54477 | gap 1, opp_overlap 120522 GGAAAAGGTATAAAA GCACTGATAGCTGCGC CGCT GCGTATCT-TCAATGC CTGGCGTCAGGCGCG TERM 140 120806 - 120821 + G 73 -9 -3.65351 | ATGTGTTGGCGCTAC CGTTGC CGCA GCAACG TTTGGCTGGACGTGA murG 120298 - 121365 + | N-acetylglucosaminyl transferase TERM 141 122733 - 122775 + G 72 -10.7 -3.03124 | gap 2 AAAATAGATCCCATT CTGGTGCCGG-ATC-CGGC GCAGGTA GCCGAGATGCTGGCACCGG TATTAACCGGTAACG murC 121419 - 122894 + | UDP-N-acetylmuramate--L-alanine ligase ddl 122887 - 123807 + | D-alanine--D-alanine ligase ftsQ 123809 - 124639 + | cell division protein FtsQ ftsA 124636 - 125898 + | cell division protein FtsA ftsZ 125959 - 127110 + | cell division protein FtsZ lpxC 127211 - 128128 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 142 128155 - 128198 + F 100 -4.5 -5.91981 | opp_overlap 128155 128167 CTGTCGTATAAAATT CGACTGGCAAATCTGGC ACTCTCTCCG GCCAGGTGAACCAGTCG TTTTTTTTGAATTTT yacA 128358 - 128870 + | SecA regulator SecM TERM 143 130707 - 130720 + G 72 -4.5 -4.72272 | opp_overlap 130707 CCTGTCGATGGAAGA TGCGC TGAT GCGTA TTTTTGCTCCCGACC secA 128932 - 131637 + | preprotein translocase subunit SecA TERM 144 131676 - 131659 - f 100 -12.7 -4.41047 | opp_overlap 131659 ACTGTTGAAGTAAAA GGCGCAG GATT CTGCGCC TTTTTTATAGGTTTA TERM 145 131659 - 131676 + F 100 -12.7 -5.33866 | opp_overlap 131659 ACTGTTGAAGTAAAA GGCGCAG GATT CTGCGCC TTTTTTATAGGTTTA TERM 146 131924 - 131907 - g 70 -4.1 -4.62069 | overlap 131909 TCGCTATTTGAAAAA CTGGAAT ATGA ATTCCCG GACAGGCATATAACT mutT 131697 - 132095 + | nucleoside triphosphate pyrophosphohydrolase SDY_0130 132234 - 132100 - | hypothetical protein TERM 147 132161 - 132129 - GT 76 -12 -2.53449 | opp_overlap 132136 132138, overlap 132128 132126 ACATTTGCACAAGAT GCCTGATGCGACGC TGTCC GCGTCTTATCAGGC CTACGTGCGGCATCA yacG 132382 - 132185 - | zinc-binding protein yacF 133135 - 132392 - | hypothetical protein TERM 148 132747 - 132737 - G 70 -6.8 -4.08485 | TGTAGGTAAATCAAA GCTG CAA CAGC CGCCTGGGATGCTCA TERM 149 132817 - 132847 + g 70 -11.1 -2.80975 | overlap 132816 GAAATTGCCCGATAC GCGGCGCGGAG ATTAATACG CTCCCCGCCGC CTTTAACTGCTGAAT coaE 133755 - 133135 - | dephospho-CoA kinase TERM 150 133459 - 133510 + g 74 -2.3 -5.0916 | gap 2, opp_overlap 133485 AGTTGCTTGCTGGAT CTGGTGTTGCGTCTCTTGCTGAATC AGCG GATGCAGCA-GGG-CGTTAAGCCAG TTTTTCTCTTCCGGG TERM 151 133728 - 133693 - G 76 -9 -3.81951 | overlap 133694 TCCGAGATCAGCAAA CGCATTGGCAACGGTA CTCT TGCCACTGCCAATGCC TCCCGTTAAGGCAAC TERM 152 133727 - 133694 - G 78 -12.5 -2.88849 | overlap 133693 CCGAGATCAGCAAAC GCATTGGCAACGGTA CTCT TGCCACTGCCAATGC CTCCCGTTAAGGCAA SDY_0135 135050 - 134943 - | hypothetical protein guaC 133980 - 135023 + | guanosine 5'-monophosphate oxidoreductase TERM 153 135032 - 135057 + gT 85 -12.6 -3.32963 | CCTGTAATCTTCCAA CGCTGGTGTG GAGCAA CACGCCAGCG TTATCCCATCCCACT TERM 154 135727 - 135713 - TR 73 -4.2 -4.77165 | TCCGGCAGAACAAAA TGCAGC ATT GCCACA ACCACCATGATTGCC hofB 137631 - 136297 - | hypothetical protein TERM 155 136340 - 136364 + g 71 -9.2 -3.55622 | TTTTCAAAAAGCGTT CGCATACCCG CCTGT CGGGCGTGCG TTTCCAGCGATTCAA ppdD 138081 - 137641 - | putative major pilin subunit TERM 156 138034 - 138021 - G 70 -6.7 -4.08692 | CAATGGCGCTTAAAA TGGCA ATGA TGCCA ATAACCACCATCAGT nadC 139177 - 138284 - | quinolinate phosphoribosyltransferase ampD 139265 - 139816 + | N-acetyl-anhydromuranmyl-L-alanine amidase ampE 139813 - 140667 + | regulatory protein AmpE TERM 157 140702 - 140674 - T 72 -10.2 -2.84325 | overlap 140671 TTGGTGTAAAGATTA TTGCCCTCACCC TGCAC GGGTGAGGGCGT AGAGAGATTAATGCG aroP 142083 - 140710 - | aromatic amino acid transporter TERM 158 141876 - 141841 - G 74 -7.6 -4.00868 | gap 1, opp_overlap 141854 GTATTTATAAGCAAA GTGGCTGAAGGAGCCTG CAA CAGGTTC-TTCGACCAC CATTTCACCTAGCTG TERM 159 143106 - 143116 + G 77 -6.8 -4.4773 | CGTCACCGAAGCGGC CCAC AAT GTGG TTTTGCTTCATCTGC pdhR 142624 - 143388 + | transcriptional regulator PdhR TERM 160 143513 - 143458 - f 74 -8.4 -3.90291 | opp_overlap 143479, overlap 143462 AGCGCGGCAACTAAA TGTAGAACCTGTCTTATTGAGCTTTC CGGC GAGAGTTCAATGGGACAGGTTCCAGA AAACTCAACGTTATT TERM 161 143509 - 143462 - f 73 -11.4 -2.70979 | opp_overlap 143479, overlap 143458 CGGCAACTAAATGTA GAACCTGTCTTATTGAGCTTTC CGGC GAGAGTTCAATGGGACAGGTTC CAGAAAACTCAACGT TERM 162 143768 - 143756 - g 78 -9.1 -3.9461 | opp_overlap 143755 CCCGTTGAAGAACAA CCGGA GTA TCCGG GTAATCTGGAACTGG aceE 143549 - 146212 + | pyruvate dehydrogenase subunit E1 aceF 146227 - 148107 + | dihydrolipoamide acetyltransferase TERM 163 148135 - 148114 - f 95 -11.5 -4.43477 | opp_overlap 148116, overlap 148116 GTGATGTAAGTAAAA GAGCCGGCC CAAC GGCCGGCTT TTTTCTGGTAATCTC TERM 164 148133 - 148116 - f 100 -14.1 -3.82321 | opp_overlap 148116, overlap 148114 GATGTAAGTAAAAGA GCCGGCC CAAC GGCCGGC TTTTTTCTGGTAATC TERM 165 148116 - 148133 + F 100 -14.1 -5.32882 | opp_overlap 148116 148114 GATGTAAGTAAAAGA GCCGGCC CAAC GGCCGGC TTTTTTCTGGTAATC TERM 166 149179 - 149151 - g 75 -5.1 -4.66833 | GCCGAACGGTAAAAA CCTCGACGCAGGC AAA GCTGGCGTGGAAG TTGACGACCGTGGTT lpdA 148315 - 149739 + | dihydrolipoamide dehydrogenase TERM 167 149774 - 149740 - T 72 -9.4 -3.62255 | opp_overlap 149730 GCGAAGAAGAAGTAA TTTTTCGTTTGCCGGA ACA TCCGGCAATTAAAAAA GCGGCTAACCACGCC TERM 168 149775 - 149791 + T 91 -6.5 -5.51402 | opp_overlap 149775 CCGGCAATTAAAAAA GCGGC TAACCAC GCCGC TTTTTTTACGTCTGT TERM 169 149791 - 149775 - T 85 -6.5 -5.26875 | opp_overlap 149775 CCGGCAATTAAAAAA GCGGC TAACCAC GCCGC TTTTTTTACGTCTGT SDY_0147 150850 - 149810 - | hypothetical protein TERM 170 149962 - 149947 - G 70 -4.7 -4.56597 | CTTTCTCCCGAAAAA CCTGA CGTTGT TCAGG TGATGCTGATTGAAC TERM 171 150008 - 150028 + g 73 -3.9 -4.8622 | overlap 150011 ATCACGTTGCTGTTG GTTCAGTGG GCG CTGCTGTAC TTTTTCCTTAAACAC SDY_0148 151263 - 150847 - | hypothetical protein insB 151781 - 151404 - | IS1 ORF2 insA 152101 - 151826 - | IS1 ORF1 SDY_0151 152643 - 152152 - | hypothetical protein SDY_0152 153016 - 152621 - | iso-IS1 ORF2 TERM 172 153402 - 153424 + G 74 -6.2 -4.50358 | opp_overlap 153403 153407, overlap 153403 AGTGCAGAACAAATC AGAAACGGTG CCA CACCGGTTCC TTTTGATATTTCACT TERM 173 153403 - 153423 + G 72 -9.7 -3.2913 | opp_overlap 153403 153407, overlap 153402 GTGCAGAACAAATCA GAAACGGTG CCA CACCGGTTC CTTTTGATATTTCAC TERM 174 153423 - 153403 - g 70 -9.7 -3.15008 | opp_overlap 153403 153402, overlap 153407 GTGCAGAACAAATCA GAAACGGTG CCA CACCGGTTC CTTTTGATATTTCAC TERM 175 153419 - 153407 - g 82 -9.1 -4.21885 | opp_overlap 153403 153402, overlap 153403 AGAACAAATCAGAAA CGGTG CCA CACCG GTTCCTTTTGATATT SDY_0153 153211 - 153459 + | hypothetical protein TERM 176 153849 - 153813 - f 79 -10.8 -3.63694 | opp_overlap 153815 153818, overlap 153814 ACCTACCCTTAATAA GCCCACCGCACCGCCA TCATC TGGCGGTGCGGTAATT GATAAATCATTGCCC TERM 177 153848 - 153814 - f 87 -14.3 -2.77895 | opp_overlap 153815 153818, overlap 153813 CCTACCCTTAATAAG CCCACCGCACCGCCA TCATC TGGCGGTGCGGTAAT TGATAAATCATTGCC TERM 178 153815 - 153847 + F 83 -13.4 -3.20435 | opp_overlap 153814 153813, overlap 153818 CTACCCTTAATAAGC CCACCGCACCGCCA TCATC TGGCGGTGCGGTAA TTGATAAATCATTGC TERM 179 153818 - 153844 + F 100 -19.5 -2.79276 | opp_overlap 153814 153813, overlap 153815 CCCTTAATAAGCCCA CCGCACCGCCA TCATC TGGCGGTGCGG TAATTGATAAATCAT panB 153922 - 154716 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase panC 154728 - 155579 + | pantoate--beta-alanine ligase TERM 180 155587 - 155611 + F 76 -9.3 -3.81146 | TGGCGTAATACTTTA CTGGCGCTA CGGCTGA TGGCGCCAG TTATTCATTGACACG insB 156192 - 156569 + | IS1 ORF2 TERM 181 156659 - 156623 - f 71 -9.9 -3.1706 | opp_overlap 156623 156629, overlap 156629 AAGTTACTTGAGCAA TTTAAATTTACTTAA ATCAGGG TTAAGTAAATTTAAA TTTCAAAATGGAGAT TERM 182 156623 - 156659 + F 75 -9.9 -3.57263 | opp_overlap 156623 156629, overlap 156629 AAGTTACTTGAGCAA TTTAAATTTACTTAA ATCAGGG TTAAGTAAATTTAAA TTTCAAAATGGAGAT SDY_0157 157117 - 157512 + | iso-IS1 ORF2 folK 158061 - 157582 - | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase pcnB 159476 - 158058 - | poly(A) polymerase I yadB 160411 - 159515 - | glutamyl-Q tRNA(Asp) synthetase TERM 183 159803 - 159793 - G 81 -6.8 -4.65895 | CTTTCCAGCCAAAAA GCTG GTA CAGC GAGATTTGCCGCACT TERM 184 160452 - 160428 - R 85 -5.6 -5.4505 | opp_overlap 160431, overlap 160431 TCTTCGAACAAAAAA TAAGGCGGGA GCATT TCCCGCCTGT GGTAAACGTGATGGA TERM 185 160431 - 160449 + r 79 -12.4 -2.79302 | opp_overlap 160428 160431 TCGAACAAAAAATAA GGCGGGAG CAT TTCCCGCC TGTGGTAAACGTGAT TERM 186 160449 - 160431 - R 100 -11.7 -4.81306 | opp_overlap 160431, overlap 160428 TCGAACAAAAAATAA GGCGGGA GCATT TCCCGCC TGTGGTAAACGTGAT dksA 160933 - 160478 - | DnaK transcriptional regulator DksA sfsA 161815 - 161111 - | sugar fermentation stimulation protein A TERM 187 161458 - 161479 + g 77 -7.3 -4.48175 | gap 1, opp_overlap 161458 161453, overlap 161472 GCAACATAAAGTCAA TACGGCTGCG TTC TGC-GCCGTA TTTTACTTCGCTTTT TERM 188 161773 - 161763 - G 83 -5.4 -5.02476 | ACATCGGCTAAAAAA CGTT TGT AACG CTGAATTAGCGTCGC yadP 162369 - 161830 - | hypothetical protein TERM 189 162198 - 162177 - G 70 -7.3 -4.07568 | opp_overlap 162177 162183, overlap 162183 TCCGTCCGGCTAAAA GAGAAAGCG CCTT CTCTTTCTC GGCGCTCACTTCGCC TERM 190 165362 - 165374 + G 78 -9.1 -3.86346 | GGCAAGGTCTGGCAA CTGCC TGC GGCAG TTTATGGCCGAATGG TERM 191 166429 - 166415 - g 71 -3.4 -4.83615 | GACGCGGCAGAAAAA GCCGCC GTG GAAGGC ATTCCGGCACTTAAG TERM 192 166459 - 166448 - g 70 -5.8 -4.20516 | CCGGCACTTAAGAAA CAGC GTAA GCTG AGCGATCTGGAAACC mrcB 165059 - 167593 + | penicillin-binding protein 1b TERM 193 167635 - 167609 - f 100 -16.7 -3.60792 | CGTCTAAGCGTGAAA TACCGGATGGC GAGTT GCCATCCGGTA AAATAACATCCCACC TERM 194 167718 - 167737 + F 76 -9.2 -3.69934 | overlap 167711 GCTCAGATTGCGTAC CGCTTGCG AACC CGCCAGCG TTTCGAATATTATTT fhuA 167813 - 170056 + | ferrichrome outer membrane transporter TERM 195 170067 - 170088 + F 82 -11.5 -3.5774 | overlap 170068 TCTAATTTCTCTTTT GGGGCACGG ATAT CCGTGCCCG TTTCACAAGTTGGCT TERM 196 170068 - 170087 + F 90 -15 -2.74322 | overlap 170067 CTAATTTCTCTTTTG GGGCACGG ATAT CCGTGCCC GTTTCACAAGTTGGC fhuC 170107 - 170904 + | iron-hydroxamate transporter ATP-binding subunit TERM 197 170927 - 170955 + G 88 -11 -4.02856 | gap 1 CTTACCTCTTATTTC GCGCCGTCGACTG TTAA CGG-CGATGGCGC TTTCTCCGTTGTTAT fhuD 170904 - 171794 + | iron-hydroxamate transporter substrate-binding subunit TERM 198 171933 - 171947 + G 72 -4.3 -4.66163 | CGCCGGATATTAACG TCATC GAGCA GATGA TTTTTCACTACAGCT fhuB 171791 - 173773 + | iron-hydroxamate transporter permease subunit TERM 199 173777 - 173803 + T 78 -12.2 -2.58579 | opp_overlap 173778, overlap 173776 CAGAGCCGTTAATTG AGTGCCTCGCCC GGT GGGCGAGGCAAA ATTATCACAACTTCG TERM 200 173802 - 173778 - T 90 -15.7 -2.53015 | opp_overlap 173777 173776 AGAGCCGTTAATTGA GTGCCTCGCCC GGT GGGCGAGGCAA AATTATCACAACTTC hemL 175088 - 173808 - | glutamate-1-semialdehyde aminotransferase TERM 201 173957 - 173947 - G 72 -6.8 -4.23615 | overlap 173943 ATCATATGGAAGAAA CGCT TAA AGCG TTCCACGTCACAGGC TERM 202 175365 - 175341 - g 88 -11.4 -3.85698 | overlap 175344 CTCCCTCTTTAGAAA CACCGCAGGC CGCGC GCCTGCGACG CAGACAACTGATTCG TERM 203 175362 - 175344 - g 73 -11.7 -2.70946 | overlap 175341 CCTCTTTAGAAACAC CGCAGGC CGCGC GCCTGCG ACGCAGACAACTGAT TERM 204 175883 - 175901 + G 81 -4.4 -5.14682 | overlap 175868 175885 CTGGCGGCGGCCTTT AACGCGCC GCT GGCGGGTA TTTTGTTTATTATCG TERM 205 175885 - 175899 + G 72 -7 -4.18024 | overlap 175868 175883 GGCGGCGGCCTTTAA CGCGCC GCT GGCGGG TATTTTGTTTATTAT yadQ 175313 - 176734 + | chloride channel protein TERM 206 177022 - 177008 - g 75 -5.6 -4.68994 | opp_overlap 177008 ATGACCATCGAAAAA CAGGGC GTT GGCCTG GTGGTTGATCCGATG yadR 176816 - 177160 + | iron-sulfur cluster insertion protein ErpA TERM 207 177170 - 177198 + T 86 -11.1 -3.68024 | overlap 177172 ATCTAATCTGTTGTT CATGTGCCGGATA AAC TATCTGGCACATC TTCTCTCTTCAACGC TERM 208 177172 - 177196 + T 90 -13.7 -3.41962 | overlap 177170 CTAATCTGTTGTTCA TGTGCCGGATA AAC TATCTGGCACA TCTTCTCTCTTCAAC yadS 177830 - 177207 - | hypothetical protein yadT 178668 - 177868 - | vitamin B12-transporter protein BtuF TERM 209 178047 - 178035 - G 71 -9.1 -3.50853 | CGCCTGTAATGACAA TCGCC TGT GGCGA GCGTGCTAACACCTG TERM 210 178651 - 178633 - G 88 -11.7 -3.79419 | overlap 178631 TGGCGCGAGAAAAGA CAGGGCG ACCAG CGCCCTG AACAGTGACTTAGCC pfs 179359 - 178661 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase SDY_0177 180797 - 181192 + | iso-IS1 ORF2 TERM 211 182195 - 182215 + G 70 -11.1 -2.78216 | opp_overlap 182195 182192, overlap 182192 AGCAACAGAAATTCA TGGCGCTGG GTT CCGGCGTCA TCATTGATGCCGATA htrA 181864 - 183288 + | serine endoprotease TERM 212 183299 - 183322 + F 95 -14.6 -3.52093 | AGTAATCTCCCTCAA CCCCTTCCTG AAAA CGGGAAGGGG TTCTCCTTACAATCT yaeG 183466 - 184266 + | hypothetical protein TERM 213 184454 - 184470 + G 78 -8.7 -4.27441 | ATGTGCAACCGCTGG CAACGTC AAA GGCGTTG TTTATTCATCGTAAT SDY_0180 184270 - 184596 + | hypothetical protein yaeH 185071 - 184685 - | hypothetical protein TERM 214 184943 - 184957 + g 75 -7.1 -4.40003 | AAACTTAACGCTCTT GGCGA AAAAC TCGCC TTTGTCTTTCTGGAA TERM 215 185344 - 185382 + r 83 -9.4 -4.28994 | opp_overlap 185334 185348 185353, overlap 185347 AATTATTCTGAACCA GAAAGCAATCGGGCAGCG TCG TGCTGCCCGTGTGCATAC TTTTAGTCGATGGTA TERM 216 185347 - 185379 + r 71 -9.7 -3.14218 | opp_overlap 185348 185353, overlap 185344 TATTCTGAACCAGAA AGCAATCGGGCAGCG TCG TGCTGCCCGTGTGCA TACTTTTAGTCGATG TERM 217 185378 - 185348 - R 95 -12.5 -4.05714 | opp_overlap 185347 185344, overlap 185353 ATTCTGAACCAGAAA GCAATCGGGCAGC GTCGT GCTGCCCGTGTGC ATACTTTTAGTCGAT TERM 218 185373 - 185353 - R 84 -14 -2.78526 | opp_overlap 185347 185344, overlap 185348 GAACCAGAAAGCAAT CGGGCAGC GTCGT GCTGCCCG TGTGCATACTTTTAG dapD 186209 - 185385 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 219 186054 - 186064 + g 76 -4 -5.00616 | overlap 186040 CTGATGCGTCACCCA TTGA CCG TCAA TTTTTTCCGCAACAC glnD 188912 - 186240 - | PII uridylyl-transferase TERM 220 188952 - 188967 + r 82 -11.8 -3.4758 | opp_overlap 188952, overlap 188946 TATCGCATTAAAAAA GCCGGC ATTC GCCGGC TTCATCTTATTCGTC TERM 221 188967 - 188952 - R 100 -11.8 -5.15634 | opp_overlap 188952 188946 TATCGCATTAAAAAA GCCGGC ATTC GCCGGC TTCATCTTATTCGTC map 189768 - 188974 - | methionine aminopeptidase TERM 222 189718 - 189728 + g 74 -2.4 -5.15381 | overlap 189707 GGCAGCCAGTCGGCC AGCG ACG CGCA TTTTTTCGATATCTT TERM 223 190546 - 190535 - g 72 -7.2 -4.24413 | overlap 190532 CTGACCAAGAAAGAA GCGC TGAT GCGC ACTCGTGAGCTGGAG rpsB 190136 - 190861 + | 30S ribosomal protein S2 TERM 224 190854 - 190842 - f 73 -7.7 -4.16842 | CCCAGGCGGAAGAAA GCTTC GTA GAAGC TGAGTAATAAGGCTT TERM 225 191036 - 191056 + F 100 -11.1 -4.89729 | GTACACGTTTGGTTA GGGGGCC TGCATAT GGCCCCC TTTTTCACTTTTATA TERM 226 191291 - 191275 - g 77 -3 -5.13521 | gap 1, overlap 191276 191279 AAAGCAGCGAAAAAA GCAGGCA ACGT TGC-TGC TGACGGCGTGATCAA tsf 191119 - 191970 + | elongation factor Ts TERM 227 192002 - 191981 - f 100 -11.5 -4.81083 | opp_overlap 191981, overlap 191984 CTTAATTATCAAAAA GGAGCCGCC TGAG GGCGGCTTC TTTTTGTGCCCATCT TERM 228 191981 - 192002 + F 100 -13.7 -4.84761 | opp_overlap 191981 191984 CTTAATTATCAAAAA GGAGCCGCC TGAG GGCGGCTTC TTTTTGTGCCCATCT TERM 229 191999 - 191984 - f 82 -11.8 -3.30145 | opp_overlap 191981, overlap 191981 AATTATCAAAAAGGA GCCGCC TGAG GGCGGC TTCTTTTTGTGCCCA pyrH 192117 - 192842 + | uridylate kinase frr 193134 - 193691 + | ribosome recycling factor TERM 230 193671 - 193691 + F 76 -8.3 -4.15044 | opp_overlap 193671 193672 193674, overlap 193672 193674 CTGGCAGACAAAGAA GCAGAACTG ATG CAGTTCTGA TTTCTTGAACGACAA TERM 231 193691 - 193671 - f 76 -8.3 -4.14627 | opp_overlap 193671 193672 193674, overlap 193672 193674 CTGGCAGACAAAGAA GCAGAACTG ATG CAGTTCTGA TTTCTTGAACGACAA TERM 232 193690 - 193672 - f 78 -11.8 -3.08294 | opp_overlap 193672 193671 193674, overlap 193671 193674 TGGCAGACAAAGAAG CAGAACTG ATG CAGTTCTG ATTTCTTGAACGACA TERM 233 193672 - 193690 + F 78 -11.8 -3.08812 | opp_overlap 193671 193672 193674, overlap 193671 193674 TGGCAGACAAAGAAG CAGAACTG ATG CAGTTCTG ATTTCTTGAACGACA TERM 234 193704 - 193752 + F 100 -11.8 -5.27206 | gap 1, opp_overlap 193710, overlap 193705 193710 TGATTTCTTGAACGA CAAAAACGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCGTTTTGC TTTTTATTCTGTCTC TERM 235 193705 - 193751 + F 100 -15.3 -3.74697 | gap 1, opp_overlap 193710, overlap 193704 193710 GATTTCTTGAACGAC AAAAACGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCGTTTTG CTTTTTATTCTGTCT TERM 236 193746 - 193710 - f 100 -13 -4.98255 | gap 1, opp_overlap 193705 193704 193710 CTTGAACGACAAAAA CGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCG TTTTGCTTTTTATTC TERM 237 193710 - 193746 + F 100 -15.2 -4.86293 | gap 1, opp_overlap 193710, overlap 193705 193704 CTTGAACGACAAAAA CGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCG TTTTGCTTTTTATTC yaeM 193783 - 194979 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 238 195084 - 195101 + F 100 -8.4 -6.02914 | TATAAGGTCAGGTAT GCCGTG GTTTTA CACGGC TTTTTTTTGTATAGG yaeS 195165 - 195926 + | undecaprenyl pyrophosphate synthase cdsA 195939 - 196796 + | CDP-diglyceride synthase yaeL 196808 - 198160 + | zinc metallopeptidase TERM 239 198699 - 198688 - g 70 -5.8 -4.18018 | CGTGTTGACCTAAAA CTGG TGTT CCAG GAAGGTGTGTCAGCT TERM 240 199423 - 199399 - g 70 -9.9 -3.14026 | opp_overlap 199395 GATACCGATACCCAA CGTGTTCCGGG TAG CCCGGACCAGG TAGATGTAGTCTACA yaeT 198190 - 200622 + | outer membrane protein assembly factor YaeT TERM 241 200721 - 200704 - f 71 -7.7 -3.96216 | overlap 200705 GGGCCACGCAAAGAA CTGCACC CTCC GGTGCAA ATGGGATGGTAAGGA TERM 242 201206 - 201178 - g 80 -11.8 -3.28712 | overlap 201164 201163 201194 CGCCGTTGCTTACAA CAGCAGCGATGT AAAAG ACATCACTGCCG ACGTACTGAAACAGG hlpA 200744 - 201229 + | periplasmic chaperone TERM 243 201311 - 201286 - g 82 -13.3 -2.97245 | opp_overlap 201284, overlap 201281 GGATGCAGAACTACA CGGTGATGGCG ATAT CGTCATCACCG GCGTTGCGTCCATGC lpxD 201233 - 202258 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 244 202285 - 202322 + F 95 -12.7 -4.07515 | overlap 202287 TTGTTCGCCAAACTT TACGGCCTGTCTCATTC TTAC GATTGCGGCAGGCCGTG TTATTATTGTCGTTT TERM 245 202287 - 202320 + F 90 -13.1 -3.60967 | overlap 202285 GTTCGCCAAACTTTA CGGCCTGTCTCATTC TTAC GATTGCGGCAGGCCG TGTTATTATTGTCGT fabZ 202363 - 202818 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 202822 - 203610 + | UDP-N-acetylglucosamine acyltransferase TERM 246 203644 - 203665 + G 95 -15.9 -2.78384 | TAACGATTGCCCTGG TCGCCGGAG AAAC CTCCGGCGA TATCCTGGGGGCCGG lpxB 203610 - 204758 + | lipid-A-disaccharide synthase TERM 247 204922 - 204911 - g 81 -7.2 -4.67011 | opp_overlap 204910 AAGCTGAGCGAAAAA CGCC GTCT GGCG CTCTATGAAGAGATC rnhB 204755 - 205351 + | ribonuclease HII dnaE 205388 - 208870 + | DNA polymerase III subunit alpha TERM 248 209036 - 209022 - g 74 -2.8 -5.00616 | GTCTGCGTGAAAAAA GCGT AGAACTG ACGC GTAAAATCTTCGCCG accA 208883 - 209842 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 249 209863 - 209880 + F 100 -9.1 -5.24129 | opp_overlap 209863 AAAAGTTCTGAAAAA GGGTCAC TTCG GTGGCCC TTTTTTATCGCCACG TERM 250 209880 - 209863 - f 80 -6.9 -4.61527 | opp_overlap 209863 AAAAGTTCTGAAAAA GGGTCAC TTCG GTGGCCC TTTTTTATCGCCACG insA 210154 - 210429 + | IS1 ORF1 insB 210474 - 210851 + | IS1 ORF2 TERM 251 211714 - 211730 + F 76 -8 -4.27617 | CACTTCGATTCTGCC TGGGTG CCGTA CACCCA TTTTCATCCGATCTA yaeR 212959 - 213291 + | hypothetical protein TERM 252 213314 - 213334 + F 83 -13.3 -3.24925 | opp_overlap 213295 TGTCATCGCGGCATT TGCCCGGTA ACG TGCCGGGCA TTGCTACTGTAAAAT tilS 213359 - 214654 + | tRNA(Ile)-lysidine synthetase TERM 253 214698 - 214664 - T 79 -12.1 -3.19192 | GCTTAGTTAAGTGAA GGCCGGATATGACGC ATTAA GCGTCGCATCCGGCG AAAGTCAATCAGGAC yaeO 214967 - 214707 - | Rho-binding antiterminator yaeP 215172 - 214954 - | hypothetical protein TERM 254 214991 - 215004 + g 84 -8.1 -4.65895 | ACCAGTAAGTTTGCC GCAGC GTAT GCTGC TTTTTCCCTGACAGC TERM 255 215615 - 215602 - g 76 -8.1 -4.24342 | CGGCGGATTAAGAAA GCCTG CACC CAGGC CGCAGAAGTGGTGCT yaeQ 215320 - 215865 + | hypothetical protein yaeJ 215862 - 216284 + | hypothetical protein cutF 216298 - 217008 + | lipoprotein involved with copper homeostasis and adhesion TERM 256 217097 - 217128 + T 87 -10 -4.36914 | opp_overlap 217107, overlap 217098 TAGCATGATTTTGTA GGCCGGATAAGGCG TTCA CGCCGCATCCGGCA TTTTGTGCACGAGGC TERM 257 217098 - 217127 + T 83 -13.5 -3.21934 | opp_overlap 217107, overlap 217097 AGCATGATTTTGTAG GCCGGATAAGGCG TTCA CGCCGCATCCGGC ATTTTGTGCACGAGG yaeF 217976 - 217152 - | hypothetical protein TERM 258 217999 - 218019 + r 87 -11.1 -3.89346 | opp_overlap 217999 AATCCATGTAAAAAA GGGCCCTGA AAT TCAGGACCC TTTCTGGCATCAGCC TERM 259 218019 - 217999 - R 100 -13.3 -5.10497 | opp_overlap 217999 AATCCATGTAAAAAA GGGCCCTGA AAT TCAGGACCC TTTCTGGCATCAGCC proS 219747 - 218029 - | prolyl-tRNA synthetase TERM 260 219795 - 219777 - R 79 -11 -3.42056 | AGTTGGAAGGTAGAA CAGGCTCA AGG CGAGCCTG GGACAAAAAAAGTGA yaeB 220565 - 219858 - | hypothetical protein TERM 261 220412 - 220437 + g 83 -12.6 -3.28924 | gap 1 AATGGCTGAATGCTT CCAGGCCG-CG AACGG CGTCGGCCTGG TTGTAGGGAGCAATG TERM 262 220462 - 220474 + g 70 -4.7 -4.57073 | overlap 220463 GCAATGAGATGCAGT TCGCC GTT GGCGC TTTTTACCAGACCTG rcsF 220966 - 220562 - | outer membrane lipoprotein TERM 263 220830 - 220840 + g 74 -8.2 -3.92659 | overlap 220823 220834 ATTCGGACCGGCGTG GCGC GCG GCGC TTTCGGTTTTGCAGG metQ 221899 - 221084 - | DL-methionine transporter substrate-binding subunit yaeE 222592 - 221939 - | DL-methionine transporter permease subunit TERM 264 222299 - 222287 - G 72 -6.9 -4.17556 | overlap 222288 CATACGGGCAATAAA CGGCG CTG CGCCA ACGGTTAACGGAACA metN 223616 - 222585 - | DL-methionine transporter ATP-binding subunit TERM 265 222906 - 222916 + g 77 -8.2 -4.13767 | overlap 222914 CTGAATAAACTTCTG CGCC AGC GGCG TTTTCGGATGCGAGA TERM 266 224140 - 224151 + G 75 -4.4 -4.82901 | opp_overlap 224140 GACTGTCGCAAACCA CATC CGGG GATG TTTTTGTCAGCACGC yaeD 223804 - 224376 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 267 224531 - 224517 - f 89 -4.2 -5.80817 | overlap 224518 224525 TTGAAGAGAAAAAAA TCCTGA AAT TCAGGG GTGACTCTGAAAGAG TERM 268 224530 - 224518 - f 73 -7.7 -4.06863 | overlap 224517 224525 TGAAGAGAAAAAAAT CCTGA AAT TCAGG GGTGACTCTGAAAGA TERM 269 224563 - 224551 - f 71 -7.7 -4.00532 | overlap 224561 CTCTGAAAGAGGAAA GCGTA ATA TACGC AACCTCGCGACAGTG TERM 270 226610 - 226573 - f 93 -6.3 -5.68438 | opp_overlap 226575 226603, overlap 226575 TGATTAAATAAAAAA TACTTCAGAGTGTACCT CCAA AGGTTCACTGCGAAGTT TTGCTCTTTAAAAAT TERM 271 226608 - 226575 - f 86 -8.9 -4.47052 | opp_overlap 226575 226603, overlap 226573 ATTAAATAAAAAATA CTTCAGAGTGTACCT CCAA AGGTTCACTGCGAAG TTTTGCTCTTTAAAA TERM 272 226575 - 226608 + F 75 -6.7 -4.49756 | opp_overlap 226575 226573, overlap 226603 ATTAAATAAAAAATA CTTCAGAGTGTACCT CCAA AGGTTCACTGCGAAG TTTTGCTCTTTAAAA TERM 273 227218 - 227206 - f 72 -6.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGCGA GGGG AGTGAAAAAGAACCT TERM 274 229704 - 229683 - f 74 -8.7 -3.91196 | opp_overlap 229700 CTGATACAGATTAAA TCAGAACGC AGAA GCGGTCTGA TAAAACAGAATTTGC TERM 275 229978 - 229997 + F 100 -10 -5.90981 | opp_overlap 229977 229978 CCACTTATTAAGAAG CCTCGAGT TATC GCTCGAGG TTTTTTTTCGTCTAC TERM 276 230891 - 230862 - g 100 -10 -5.0916 | TGCCGAAGATAAAAA GCGATCGCCGCA CTGGAT TGCAACGACCGC CTAGTTAGCCCGGAA dkgB 230128 - 230895 + | 2,5-diketo-D-gluconate reductase B TERM 277 230941 - 230958 + T 95 -11.3 -4.68593 | ATTAAGCCTCTCTGA CAGCTCC TCTG GGAGCTG TTTTTACATGCTCGC yafC 231841 - 230927 - | putative transcriptional regulator LYSR-type TERM 278 232052 - 232033 - H 82 -11.4 -3.54771 | opp_overlap 232017, overlap 232016 CCTATAACAGTAGAA CCCTCCCG AGTG CGGAAGGG TTGACGTAATAGAGG TERM 279 232148 - 232124 - g 72 -9.9 -3.28924 | opp_overlap 232123 232119 TATGTTGCCGGACAA CCTGCGGAAAG GAT CTTACCGCCGG GGTCTTTTGCGAGCA TERM 280 232747 - 232770 + G 82 -3.1 -5.18371 | overlap 232741 232742 232747 232745 CGATGATCAGCGCCG TCGGGCG TTTGGTCGCC CGCTCGA TTTTGTTTTCTACCG yafD 232082 - 232882 + | hypothetical protein TERM 281 232903 - 232928 + F 81 -8.3 -4.46926 | gap 1, opp_overlap 232887 232915, overlap 232888 232887 GTCAGGTCTGCCACA GGGCAG-ACCAA CGT TTGGCGCTGCCC TTTTATACTCAAATA yafE 233151 - 233714 + | putative biotin synthesis protein TERM 282 233723 - 233743 + T 100 -10.4 -5.25699 | opp_overlap 233723 GGCATAAATAAAAAA GGCACCGG GGGAA TCGGTGCC TTTTTATTATCTGGT TERM 283 233743 - 233723 - T 100 -9.7 -5.72622 | opp_overlap 233723 GGCATAAATAAAAAA GGCACCG GGGGAAT CGGTGCC TTTTTATTATCTGGT dniR 235120 - 233762 - | membrane-bound lytic murein transglycosylase D TERM 284 234461 - 234498 + g 72 -5.6 -4.45664 | gap 1, opp_overlap 234470, overlap 234470 CTGCGGCAACGGTAA CGACCAGAAGTCCGTGG ATTTC CCACGCGCTT-TGTTCG TTTTAATTGCCTTCA TERM 285 234470 - 234490 + g 70 -4.6 -4.46669 | opp_overlap 234470, overlap 234461 CGGTAACGACCAGAA GTCCGTGG ATTTC CCACGCGC TTTGTTCGTTTTAAT gloB 235947 - 235192 - | hydroxyacylglutathione hydrolase TERM 286 235573 - 235561 - G 77 -6.9 -4.48072 | ACACCCACCAGAAAA CAGCG TGT CGCCG CAAAATAGATAAGGT yafS 235963 - 236703 + | hypothetical protein rnhA 237167 - 236700 - | ribonuclease H dnaQ 237232 - 237963 + | DNA polymerase III subunit epsilon TERM 287 238204 - 238224 + T 100 -6.9 -5.88197 | opp_overlap 238203 238204 ATGAGTTCAGAGAAC CGCAATATT TTT AATTTTGCG TTTTTTTGTATTTGA insB 238781 - 238404 - | IS1 ORF2 insA 239101 - 238826 - | IS1 ORF1 SDY_0238 239412 - 239152 - | hypothetical protein TERM 288 239267 - 239281 + g 70 -4.3 -4.57569 | opp_overlap 239278 TTAAGTGTAATAGTG CTCAT AATAA ATGAG TTTTTAACACAATCA SDY_0239 239765 - 239550 - | iso-IS1 ORF2 SDY_0240 239944 - 239762 - | iso-IS1 ORF2 SDY_0241 240901 - 240296 - | hypothetical protein TERM 289 240559 - 240570 + g 72 -5.8 -4.42118 | CTTTGATATTCTCTT CTGG AGAG CCAG TTATTTGTTCTTTTG SDY_0242 241741 - 242136 + | iso-IS1 ORF2 SDY_0243 242114 - 242605 + | hypothetical protein SDY_0244 242699 - 243361 + | transposase TERM 290 243425 - 243449 + T 88 -3.6 -5.72254 | gap 1, overlap 243420 243425 243426 CATGCTCTTGCCCTG C-GGGGGGATT ATTA AATCTTCCCAG TTTTTTATTATTTAA yafV 244295 - 243525 - | hypothetical protein TERM 291 244008 - 243988 - G 74 -3.1 -4.91109 | overlap 243992 CGCTTATCATAAAAA TGTACCGTG CCG CCCGGCTCA ACCAGCAAAAAGCGG ykfE 244449 - 244922 + | vertebrate C-lysozyme inhibitor TERM 292 244956 - 244939 - f 100 -12.7 -4.56367 | opp_overlap 244939 TAGCGGATAAAGAAA CGGAGCC TTTC GGCTCCG TTATTCAATTACGCG TERM 293 244939 - 244956 + F 93 -12.7 -3.73068 | opp_overlap 244939 TAGCGGATAAAGAAA CGGAGCC TTTC GGCTCCG TTATTCAATTACGCG TERM 294 246950 - 246968 + F 79 -11.7 -3.15249 | opp_overlap 246949 246948 GGTACGCTCACAACT CTGGCGG CAGAT CCGCCAG TTCATGGGGGATCTG TERM 295 247886 - 247867 - g 74 -7.8 -4.11216 | gap 1, opp_overlap 247861, overlap 247868 TCGCTACCGTGAAAA CCGTCCGGG CTA CCCGG-CGA TTGCCATTTCTGACG gmhA 247649 - 248227 + | phosphoheptose isomerase TERM 296 248301 - 248250 - f 71 -10 -3.21924 | opp_overlap 248239 248238 248249 248250 248292, overlap 248248 GTAGGCCGGATAAGA CGTTTACGCCGCATCCGGCATTTG TGCG CTGATGCCTGATGCGACGCTGACG CGTCTTATCATGCCT TERM 297 249160 - 249139 - g 74 -8.7 -3.91084 | opp_overlap 249154 TGACGGGCAATGAAA CCTGGCAAA AGAT TATGCCAGG CGAATGGCGCTTATT yafJ 248433 - 249200 + | putative amidotransferase yafK 249911 - 249171 - | hypothetical protein yafQ 250345 - 250067 - | hypothetical protein dinJ 250608 - 250348 - | damage-inducible protein J TERM 298 250407 - 250417 + g 86 -6.8 -4.93547 | TATGAACACCAACGC CAGC TTC GCTG TTTTTGATTGATTGA yafL 250818 - 251567 + | putative lipoprotein yafM 251743 - 252081 + | hypothetical protein SDY_0255 252416 - 252811 + | iso-IS1 ORF2 sfmC 253042 - 253407 + | putative chaperone insA 253441 - 253716 + | IS1 ORF1 insB 253761 - 254138 + | IS1 ORF2 TERM 299 254307 - 254277 - T 76 -11.8 -2.60079 | overlap 254287 TGACCGTATAATTCA CGCGATTACACCGC ATT GCGGTATCAACGCG CCCTTAGCTCAGTTG SDY_0260 255048 - 254653 - | iso-IS1 ORF2 TERM 300 255792 - 255810 + H 72 -5.2 -4.63184 | opp_overlap 255775, overlap 255793 CATGACAGATTTCGC TGCCGTGA CTG TCACCGCG TTTTTCAGCTCACTT SDY_0261 256001 - 256396 + | iso-IS1 ORF2 TERM 301 256910 - 256880 - T 86 -11.2 -3.727 | opp_overlap 256892, overlap 256882 CTGACGAGAGCGAAA GAGGTAAGCCAGGT CGT ACCCGACTTACCTG GAGGAGATTTAATAC TERM 302 256908 - 256882 - T 90 -13.8 -3.44487 | opp_overlap 256892, overlap 256880 GACGAGAGCGAAAGA GGTAAGCCAGGT CGT ACCCGACTTACC TGGAGGAGATTTAAT SDY_0263 257167 - 256919 - | hypothetical protein ybcH 257809 - 257216 - | hypothetical protein TERM 303 260667 - 260652 - R 76 -4 -5.05116 | gap 1, opp_overlap 260665, overlap 260654 GGATAAATAACAAAA TG-GCGA TAA TCGCTCA GCCCCAGCTCTTCTG nfrB 262859 - 260895 - | bacteriophage N4 receptor TERM 304 261714 - 261686 - G 78 -7.4 -4.36914 | gap 1 GGTTGCCCCAGAAAA GACGCAGG-ACGG AAAG CAGCCCCTGCGTC AGGCCGTAGTAGCCA TERM 305 261894 - 261878 - G 72 -5.1 -4.44797 | overlap 261870 CCAGCAACAGCAAAA GCTGG ATCATCA CCAGC ATCGCGAGGAAGCTG TERM 306 262007 - 262025 + g 71 -3 -4.82901 | opp_overlap 262007, overlap 262009 AGCCCTGGAAAACAA TGCCGATG ATC CAGCGGGA TTTTTGTCGAACCGC insB 263221 - 263598 + | IS1 ORF2 TERM 307 263698 - 263675 - f 72 -6.1 -4.27861 | overlap 263677 AACATACAGGGAAAA TATCTGGAT TATGTG ATCCAGACA GGCAAAAAAATATAG TERM 308 264426 - 264415 - g 75 -7.2 -4.30448 | AAATCCAACTCAAAA CCCG CGCG CGGG AAAAAGGCTTGCTGG fdrA 263934 - 265604 + | membrane protein FdrA ylbE 265872 - 266873 + | hypothetical protein ylbF 266884 - 267699 + | putative carboxylase insB 268345 - 267968 - | IS1 ORF2 insA 268665 - 268390 - | IS1 ORF1 TERM 309 268804 - 268820 + r 82 -7.9 -4.56597 | CGCGCATTGAGGTTT CGCCTGA TGA TCCGGCG TTTTTGCAGCCAGAG purK 270572 - 269505 - | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 310 270071 - 270048 - G 70 -5.2 -4.4009 | CGTCAGCGGATAAAA CACGGTGCTG CCAT CAAAACCGCG CGCGCCAACCAGCGA purE 271078 - 270569 - | AIR carboxylase, catalytic subunit ybbF 271918 - 271196 - | UDP-2,3-diacylglucosamine hydrolase TERM 311 271691 - 271677 - G 74 -6.4 -4.46212 | TTGCCGAGCAGAAAA TCACGG TTG CCATGA ATGAAATAACAGGGA TERM 312 271883 - 271848 - G 100 -12.7 -5.00616 | gap 1, opp_overlap 271857 TCCCCCGCTAAAAAA CGCAGAA-AACCGGCG GTGAT CGCCGGTTCTTCCACG CAGAGATGAAGATCT TERM 313 271857 - 271873 + g 85 -11.5 -3.61398 | opp_overlap 271848 AAAAAACGCAGAAAA CCGGCGG TGA TCGCCGG TTCTTCCACGCAGAG ppiB 272415 - 271921 - | peptidyl-prolyl cis-trans isomerase B (rotamase B) TERM 314 272172 - 272182 + g 72 -5.4 -4.58283 | GGGCCATTGCCAGCG TACC ACG GGTA TTTTTCAGACCGTTG cysS 272589 - 273974 + | cysteinyl-tRNA synthetase TERM 315 273986 - 274009 + T 100 -16.8 -3.46602 | opp_overlap 273976 GTAATTGCGCAATTG CCGGATGCGA GTTT TCGCATCCGG TTATCGTCTGCGCCA ybcI 274531 - 274187 - | hypothetical protein TERM 316 274388 - 274372 - GT 78 -5.1 -4.77036 | opp_overlap 274374 CGCGATGACCAAAAA CATTGCC GTA AGCAACG CCAAATTTAAACGAC ybcJ 274872 - 274483 - | hypothetical protein TERM 317 274630 - 274609 - GR 100 -15.9 -3.95836 | AGTCTGAAAAGAGAA CCGGCCTGT TGAT ACAGGCCGG GAAAGGGAGCAGGCA folD 275719 - 274853 - | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase TERM 318 274884 - 274898 + g 72 -7.1 -4.18494 | opp_overlap 274882 274886 TCATGATATTCAACG CACGC CTGTA GCGTG TTTTCAATCAGCGTG TERM 319 275118 - 275135 + g 70 -4.1 -4.72272 | AACAGATCGGCATTT TCTACGT GATG ACGCAGA TTTTTAGTGAAGCGG TERM 320 275869 - 275879 + r 73 -4 -4.75372 | TGAGGTCGCTGAGAT TGAA AGC TTCA TTTTTCGTCCATGAT insA 276603 - 276328 - | IS1 ORF1 SDY_0283 277427 - 276714 - | IS600 ORF2 SDY_0284 277870 - 277568 - | IS600 ORF1 TERM 321 278560 - 278544 - g 76 -10.8 -3.33261 | opp_overlap 278535 278524 CTCGAACCGCTACAA CCGGGC TTTTT GCCCGG CCGTGCCGAGCAGCA TERM 322 279491 - 279473 - g 79 -2.2 -5.1925 | overlap 279474 279475 TCATAACGCAAAAAA CTGGGACG ACA CGACCCTA CTGGCACACGCAGAC ybaE 278268 - 279563 + | hypothetical protein TERM 323 279864 - 279878 + F 88 -8.6 -4.89477 | CCGGGTTAATCGCAG GCGTTA CCA TAACGC TTTTATTGTTCAAGC TERM 324 280275 - 280249 - g 72 -7.3 -4.21194 | gap 1 GCGTATCAGGTAAAA GCAGAAGCC-GT AATT ACTGGCGTCTGC GAAACGGATTTCTCC ybaX 279904 - 280599 + | queuosine biosynthesis protein QueC ybaW 281049 - 280651 - | hypothetical protein TERM 325 280759 - 280735 - G 77 -5.8 -4.69415 | gap 1 ATCAATACAAACAAA GGTAATAAGCG CATC CGCT-ACTACC TGCCCTTCCGGCTCC SDY_0288 281443 - 281087 - | iso-IS1 ORF2 TERM 326 281692 - 281674 - H 72 -5.2 -4.63184 | opp_overlap 281684, overlap 281675 AAGTGAGCTGAAAAA CGCGGTGA CAG TCACGGCA GCGAAATCTGTCATG TERM 327 281893 - 281871 - g 71 -10.7 -2.96452 | opp_overlap 281871, overlap 281866 281873 ACTGTTATAAGTACA GAGGTCATA ACTGG TATGACCTC TTCAGTCTGGCAAAA TERM 328 281871 - 281893 + G 72 -10.7 -3.12351 | opp_overlap 281871 281866 281873 ACTGTTATAAGTACA GAGGTCATA ACTGG TATGACCTC TTCAGTCTGGCAAAA SDY_0289 281678 - 281929 + | hypothetical protein TERM 329 281924 - 281911 - T 70 -2.4 -5.0133 | opp_overlap 281911 CAGTCTGGCAAAAAA TTGC CACTAT GCAA ATTAATTACAGGGTT ybaV 282301 - 281930 - | hypothetical protein TERM 330 282409 - 282382 - R 72 -10.6 -2.93447 | opp_overlap 282383 282388, overlap 282388 GCAATGTTCAGAAAT GGAAAAGGCCGC GAAA GCGACCTTTTCT TGTTACAGCTGCAAA TERM 331 282383 - 282408 + r 86 -11.9 -3.63515 | opp_overlap 282382 282388, overlap 282388 CAATGTTCAGAAATG GAAAAGGCCGC GAAA GCGACCTTTTC TTGTTACAGCTGCAA TERM 332 282403 - 282388 - R 81 -8.2 -4.39571 | opp_overlap 282383 282388, overlap 282382 TTCAGAAATGGAAAA GGCCGC GAAA GCGACC TTTTCTTGTTACAGC TERM 333 282388 - 282403 + r 78 -6 -4.89477 | opp_overlap 282388 282382, overlap 282383 TTCAGAAATGGAAAA GGCCGC GAAA GCGACC TTTTCTTGTTACAGC ybaU 284323 - 282452 - | peptidyl-prolyl cis-trans isomerase (rotamase D) TERM 334 282534 - 282565 + g 86 -3.6 -5.36965 | gap 1 TCAAAGACGATTTGT GCG-TTGTTCTGGGT GAT ACCCTGCACCATCGC TTTTTTCTGATCTTC TERM 335 284479 - 284460 - R 93 -6.4 -5.7827 | AATACAAATAAAAAA GGCACATC AGTA GATGCACC CTTGAACTTCGTCAC hupB 284787 - 284515 - | transcriptional regulator HU subunit beta lon 287359 - 284921 - | DNA-binding ATP-dependent protease La TERM 336 286066 - 286077 + g 70 -4.4 -4.45485 | opp_overlap 286074 CCGGATCGCCACGCA TGTC AGAA GACA TTTTGTCGATCTCAT TERM 337 286408 - 286424 + g 82 -9.4 -4.17355 | overlap 286413 286423 CGGTATCAAGGATTT CCTGCG CCTGA CGCAGG TCTTTTTTGACCTTG TERM 338 286413 - 286426 + g 77 -3.1 -5.10029 | gap 1, overlap 286408 286423 TCAAGGATTTCCTGC G-CCTG ACG CAGGTC TTTTTTGACCTTGCT TERM 339 287518 - 287490 - R 80 -6.7 -4.88711 | opp_overlap 287495, overlap 287495 AGAATAGAGGAAAAA TGAAAGGGGAGAT AAA ATCCCCCCTTTTT GGTTAACTGACTGTA TERM 340 287513 - 287495 - R 91 -11 -4.3623 | opp_overlap 287495, overlap 287490 AGAGGAAAAATGAAA GGGGAGAT AAA ATCCCCCC TTTTTGGTTAACTGA TERM 341 287495 - 287513 + r 93 -8.8 -4.88407 | opp_overlap 287495 287490 AGAGGAAAAATGAAA GGGGAGAT AAA ATCCCCCC TTTTTGGTTAACTGA clpX 288821 - 287547 - | ATP-dependent protease ATP-binding subunit clpP 289570 - 288947 - | ATP-dependent Clp protease proteolytic subunit TERM 342 289780 - 289757 - R 100 -12.4 -5.67063 | opp_overlap 289756 289757 TTCATGACAAAAAAA GCCCACCACC TGGC GGTGACGGGC CTTTGTGCGAATTTA tig 291113 - 289815 - | trigger factor SDY_0297 291523 - 291260 - | hypothetical protein TERM 343 291298 - 291313 + gr 90 -6.8 -5.055 | overlap 291300 GTCGAGAACGGTTAT TGCGCG CTGT CGCGTA TTTTTTCACAATTCC TERM 344 291300 - 291311 + gr 72 -7.2 -4.15235 | overlap 291298 CGAGAACGGTTATTG CGCG CTGT CGCG TATTTTTTCACAATT TERM 345 291403 - 291380 - GR 93 -9.6 -4.59984 | opp_overlap 291385 291400, overlap 291385 AAAATCCAGACAAAA CAAAACGGCC CGCA GGCCGTTTTT CATAAAATCTTTAGC TERM 346 291385 - 291398 + gr 100 -9.5 -4.74132 | opp_overlap 291385 291380 CCAGACAAAACAAAA CGGCC CGCA GGCCG TTTTTCATAAAATCT TERM 347 291398 - 291385 - GR 100 -9.5 -5.23292 | opp_overlap 291385, overlap 291380 CCAGACAAAACAAAA CGGCC CGCA GGCCG TTTTTCATAAAATCT bolA 291774 - 291457 - | transcriptional regulator BolA yajG 292079 - 292657 + | hypothetical protein TERM 348 292862 - 292878 + G 71 -2.9 -4.76892 | overlap 292863 TGGTTTCTTCTCTCT GGTAGGC CAG GCTTACG TTTTTAAATTCCTCT TERM 349 293040 - 293053 + G 75 -4.5 -4.81551 | TGGATGGCGGCGCTG GCGGT GGTG ATCGC TTTTTGCTCTGCCTC TERM 350 293513 - 293497 - g 73 -3.6 -4.86731 | opp_overlap 293511 GCGTGGTAAACAAAA CGCTTG GCTTA CTAGCG ACCATTGTTGGCGCA ampG 292701 - 294176 + | muropeptide transporter TERM 351 294233 - 294187 - T 77 -10.5 -3.38314 | overlap 294185 CGTAATCTGTAAATA TTATTTAGCTGTAGTAATCAC TCGCC GTAATTATTACGGCTAAATAA ACATCAGCATCGCTT SDY_0301 294668 - 294273 - | iso-IS1 ORF2 SDY_0302 294863 - 295081 + | hypothetical protein TERM 352 295238 - 295254 + G 77 -6.5 -4.67234 | overlap 295239 TGCCATTGGTATTTA TGGTCTG ACT CAGGCCG TTTTTCAGATTCCGT yajR 295062 - 296432 + | putative transport protein TERM 353 296543 - 296514 - T 73 -11.5 -2.72344 | TTGTAGGCCGAATTA GCTGTTCATGCCG TATT CGGCATGAACAAA ACGCACATTGTCGCG yajQ 297051 - 296560 - | nucleotide-binding protein TERM 354 297127 - 297113 - H 73 -10 -3.38135 | opp_overlap 297109 297125, overlap 297111 GTTAAATAACCAACA GTCCTG CAC CAGGAC GTATCCCTTAATTGT TERM 355 297125 - 297179 + H 88 -12.5 -3.61398 | gap 2, opp_overlap 297113 297111 297168, overlap 297109 297128 ACAGTCCTGCACCAG GACGTATCCCTTAATTGTGCATAGTCG CAA CAGC-ATGCACAATTAAGGGATA-GCC TTATTGAACACCCGG TERM 356 297128 - 297178 + H 84 -13.7 -2.76696 | opp_overlap 297168, overlap 297109 297125 GTCCTGCACCAGGAC G-TATCCCTTAATTGTGCATAGTCG CAA CAGC-ATGCACAATTAAGGGATAGC CTTATTGAACACCCG apbA 297219 - 298130 + | 2-dehydropantoate 2-reductase thiJ 298087 - 298683 + | hypothetical protein TERM 357 298723 - 298700 - T 100 -15.4 -3.55444 | GTCGGATGCGGCAAA CGTCGCATCT GACC AGATGCGACG TAAAAACTACAAATT yajK 300185 - 298737 - | thiamine biosynthesis protein ThiI xseB 300391 - 300633 + | exodeoxyribonuclease VII small subunit ispA 300633 - 301532 + | geranyltranstransferase TERM 358 303123 - 303109 - g 73 -11.4 -2.59564 | overlap 303108 CGCTGATGCCAGAAG CGGCGA AAG TCGCCG AATCGCTGAACGCCA TERM 359 303246 - 303233 - g 78 -5.2 -4.78237 | TACCGTAGAAGAAAA CGCC ATTATG GGCG GTGCAGGCAGCGGAG dxs 301557 - 303419 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 360 304000 - 303990 - g 81 -6.8 -4.66833 | CTGGAACTCCAAAAA CAGC ACG GCTG GGCGCAGTTTGTCAG yajO 303474 - 304448 + | putative NAD(P)H-dependent xylose reductase SDY_0312 304825 - 305220 + | iso-IS1 ORF2 SDY_0313 305221 - 305625 + | hypothetical protein SDY_0314 306017 - 305622 - | iso-IS1 ORF2 SDY_0315 306388 - 306627 + | hypothetical protein TERM 361 306701 - 306679 - T 77 -10.6 -3.37755 | opp_overlap 306695 306696, overlap 306677 ATACACCTTGAAATA TCGCCGCATA GTA TATTCGGCGA TGTCGGGTTTTACTT TERM 362 306722 - 306745 + T 82 -11 -3.61988 | opp_overlap 306724, overlap 306717 306724 GGTTTTACTTTAACA GAGTGCCCCA AAAT TGGGGCACTG TTCATTTATAAATCA TERM 363 306743 - 306724 - T 85 -13.6 -3.08813 | opp_overlap 306724 306722 306717 TTTTACTTTAACAGA GTGCCCCA AAAT TGGGGCAC TGTTCATTTATAAAT TERM 364 306724 - 306743 + T 90 -13.6 -3.38317 | opp_overlap 306724, overlap 306722 306717 TTTTACTTTAACAGA GTGCCCCA AAAT TGGGGCAC TGTTCATTTATAAAT pgpA 307320 - 306805 - | phosphatidylglycerophosphatase A thiL 308275 - 307298 - | thiamine monophosphate kinase TERM 365 307569 - 307556 - G 70 -4.5 -4.47328 | overlap 307557 AAGCGCATCAGAAAA CGGCA GCAA TGCCA GGTCAATACGTGCGC TERM 366 308346 - 308306 - R 95 -7.7 -5.43553 | gap 2 AGGTAAAAAAGAAAA GGCCGGC-GAT-CATGGAA CGGTC TTCCGTGAATCTACCGGCC TGGATATTACTTTTT nusB 308772 - 308353 - | transcription antitermination protein NusB TERM 367 308501 - 308526 + g 76 -3.9 -4.89852 | gap 1, overlap 308502 308503 CTACGTTTAGACAGT TC-GTACAGCGC AAT GCGCAGTACTGC TTTTTCTACCTGTCC TERM 368 308503 - 308523 + g 76 -11.1 -3.32986 | overlap 308502 308501 ACGTTTAGACAGTTC GTACAGCGC AAT GCGCAGTAC TGCTTTTTCTACCTG ribH 309262 - 308792 - | riboflavin synthase subunit beta ribD 310454 - 309351 - | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ybaD 310907 - 310458 - | transcriptional regulator NrdR TERM 369 311165 - 311150 - g 71 -9 -3.53018 | overlap 311148 311152 GCGACAGATGAAACA CAGCGT CAGC ACGCTG AACCAGGAGATGACG TERM 370 311262 - 311219 - g 76 -7.4 -4.29396 | opp_overlap 311235, overlap 311207 311206 AATCACTCAGCAAAA CAGGCTGAATGCAAAATCCA GCAG TGGGGTTTACTTTCTGCCTG GCACGAAAACACCGG yajI 311058 - 311597 + | hypothetical protein tsx 311896 - 312780 + | nucleoside channel TERM 371 312810 - 312790 - T 95 -12.6 -4.30576 | opp_overlap 312790 TTCTGATTATGAAAA TGCCGGGA TTTAT TCCCGGCA TTTCAGATTGTTAAC TERM 372 312790 - 312810 + T 93 -12.6 -3.72051 | opp_overlap 312790 TTCTGATTATGAAAA TGCCGGGA TTTAT TCCCGGCA TTTCAGATTGTTAAC yajD 313304 - 312957 - | hypothetical protein TERM 373 313389 - 313408 + r 73 -7.8 -4.11216 | opp_overlap 313389 ATACATCAAAAAAAA TCCCGATC TTCT GACCGGGA TTTTCAACATCAACG TERM 374 313408 - 313389 - R 100 -10 -5.92337 | opp_overlap 313389 ATACATCAAAAAAAA TCCCGATC TTCT GACCGGGA TTTTCAACATCAACG secF 314404 - 313433 - | preprotein translocase subunit SecF secD 316262 - 314415 - | preprotein translocase subunit SecD TERM 375 315168 - 315183 + g 71 -9 -3.54029 | CACAAACAGGGTTGC CATCGG TTTG CCGATG TTGTCCTTAGTGAAG TERM 376 315701 - 315747 + g 73 -3.8 -4.86731 | opp_overlap 315690, overlap 315704 315704 315706 GATACGCAATGGCTT CATC-ACGAGCTTTAGCATCGC GGAAA GTGATGCTCAGGC-CGTAGTTG TTTTCTTTACGAACG yajC 316622 - 316290 - | preprotein translocase subunit YajC tgt 317772 - 316645 - | queuine tRNA-ribosyltransferase TERM 377 317709 - 317693 - G 70 -5.1 -4.33785 | overlap 317690 ACAGGCATAAAACAA GGCGT TTCCACT ACGCC ACGATCAAAGACCAG queA 318897 - 317827 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 378 318078 - 318088 + g 72 -5.4 -4.57569 | CGTCAAAGAACGGTT CGAT GAG ATCG TTTTTCGCCGCCTGA TERM 379 318370 - 318347 - G 70 -6.6 -4.0896 | opp_overlap 318361 318361 318363, overlap 318351 318356 AAAGGTTCGTCAAAA TGCAGACCAG CGGT CGGGGCTGCA ACCGCGCCCGGTTTT TERM 380 318361 - 318381 + g 72 -4.6 -4.70659 | gap 1, opp_overlap 318347 318356, overlap 318361 318363 ATGCAGACCAGCGGT CGGGGCTGC AACC GC-GCCCGG TTTTTCGCTATAAAC TERM 381 318584 - 318600 + g 74 -10.1 -3.53091 | overlap 318581 CCCAGCAGCAGTTCT GCGCCAG GTT TTGGCGC TTTCGAGGCGCGAAT yajB 319157 - 319588 + | putative glycoprotein TERM 382 319674 - 319661 - T 81 -5.3 -5.10208 | CAACTGTAAGAAAAA CATTC GCTG GAATG ATTGGCGATATCTTT SDY_0331 320149 - 319904 - | hypothetical protein SDY_0332 320344 - 320529 + | iso-IS1 ORF2 SDY_0333 320526 - 320741 + | iso-IS1 ORF2 TERM 383 322205 - 322177 - T 88 -14.6 -3.03338 | opp_overlap 322163, overlap 322166 ATAACTTTCGGAATA GCCGGATCAGGA TTTCC TCCTGAACCGGC TTACAGAACGCAAGT proY 323595 - 322222 - | putative proline-specific permease TERM 384 323649 - 323626 - R 100 -15.3 -5.64304 | opp_overlap 323629 CAACACAATAAAAAA CCACGGGGC ATCGCA GCCCCGTGG TTAAAACAAATGTTC brnQ 324990 - 323671 - | branched chain amino acid transport system II carrier protein TERM 385 325370 - 325349 - R 100 -13.1 -4.88918 | opp_overlap 325352 TGACTGCAAAGAAAA TAAGCCAGC ATTG GCTGGCTTA TGGCAATAAAAGATG TERM 386 325352 - 325367 + r 77 -10.4 -3.31144 | opp_overlap 325349 CTGCAAAGAAAATAA GCCAGC ATTG GCTGGC TTATGGCAATAAAAG TERM 387 326642 - 326616 - R 79 -2.8 -5.29385 | overlap 326618 326632 AAGGTAACCAAAAAA TGCACCCAGGAT GAA AGCCGGGAGGCA GCAAAGTAGCAGCTC phoB 327440 - 326751 - | transcriptional regulator PhoB TERM 388 328223 - 328207 - R 72 -6.5 -4.25104 | opp_overlap 328207 328206 328202, overlap 328211 TGGGGGCCAGTAAAA GTGACGC CGT GCGTGAC ATTTATATTGGCACG TERM 389 328406 - 328435 + r 89 -9.3 -4.59109 | overlap 328398 328408 TGTCCATCTGGTGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 390 328408 - 328433 + r 100 -16.3 -3.90762 | overlap 328398 328406 TCCATCTGGTGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SDY_0340 329763 - 328417 - | IS4 orf TERM 391 329753 - 329778 + g 73 -9.1 -3.61398 | opp_overlap 329753 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 392 329778 - 329753 - G 100 -9.8 -5.61596 | opp_overlap 329753 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 393 330995 - 330966 - g 83 -5.1 -5.14163 | gap 1, overlap 330967 ACTGACGAAGAAAAA CTGTTACTTACCGC GCA GCAGCAAG-AACAA CAATCACTAAACTGG TERM 394 331113 - 331092 - g 87 -5 -5.29445 | opp_overlap 331092 GCCGAAGAAGAAAAA GCGCAACC TCAACT GGCGGCGC TTAGTCTGGCACAAC TERM 395 333060 - 333046 - g 73 -11.4 -2.77962 | overlap 333045 TGTTACAGCGCAAAG CCAGCG AGG CGCTGG AAGTCGAGGTTGTTG sbcC 330267 - 333404 + | exonuclease subunit SbcC TERM 396 333838 - 333850 + F 74 -3.3 -5.0538 | CCTGGTTTCCGGCTT TCCGC ATG GCGCA TTTTTTGGCGTCGGC TERM 397 333996 - 334006 + F 73 -2.4 -5.14163 | GTCAGGAATTTAGCT GGCG CTA CACC TTTTTATTGATCGCT TERM 398 334123 - 334093 - f 79 -9 -4.07246 | CGAGGCGAAAGGAAA GCTGCGCGAACAAT TTC ACTTTTTGCGCAGC CCGGCCCCGTGGTTA SDY_0343 334611 - 335006 + | iso-IS1 ORF2 TERM 399 335584 - 335625 + T 89 -5.7 -5.6473 | opp_overlap 335582 335584, overlap 335586 335587 GTAAGCCTGATAAGA CGCGGCAAGCGTCGCATCA GGCA TGATGCGCCAATTGCCTGG TTTTTTTACTCTTGT TERM 400 335587 - 335622 + T 79 -10.4 -3.5415 | opp_overlap 335582 335584, overlap 335586 335584 AGCCTGATAAGACGC GGCAAGCGTCGCATCA GGCA TGATGCGCCAATTGCC TGGTTTTTTTACTCT yajF 336539 - 335631 - | fructokinase TERM 401 337114 - 337102 - g 77 -3.3 -5.03314 | overlap 337110 GCCAGTGCCAAAAAA GCGGA AGA TACGC TGGCACTGCTGCGTA rdgC 336664 - 337575 + | recombination associated protein SDY_0346 338108 - 337653 - | hypothetical protein SDY_0347 338644 - 338249 - | iso-IS1 ORF2 SDY_0348 339904 - 338996 - | hypothetical protein SDY_0349 340068 - 340433 + | insertion sequence 2 OrfA protein SDY_0350 340391 - 341296 + | insertion element IS2 transposase InsD SDY_0351 342028 - 342243 + | iso-IS1 ORF2 TERM 402 342323 - 342299 - T 80 -6.3 -4.8667 | overlap 342279 342300 GATATTTCAGAAAAA TGCCCTCCCGT TCA AGGGGAAGGCG AGGAATTACAGATAG TERM 403 342322 - 342300 - T 75 -9.8 -3.51279 | overlap 342279 342299 ATATTTCAGAAAAAT GCCCTCCCGT TCA AGGGGAAGGC GAGGAATTACAGATA yaiE 342613 - 342329 - | hypothetical protein aroM 343362 - 342685 - | hypothetical protein yaiA 343811 - 343620 - | hypothetical protein aroL 344385 - 343861 - | shikimate kinase II TERM 404 344502 - 344486 - R 89 -5.9 -5.64421 | ATTGTAAAGAAAAAA TTCCACT TAA AGTGAAA GTCTCAATACATCCC yaiI 345026 - 344568 - | hypothetical protein proC 345146 - 345955 + | pyrroline-5-carboxylate reductase TERM 405 345964 - 346004 + T 93 -9.9 -4.65182 | gap 3 ATCCTGATGACTTTC GCCGGACGTCAGGCCGCCAC TTCG GTG-CGGT-T-ACGTCCGGC TTTCTTTGCTTTGTA yaiC 347087 - 345972 - | diguanylate cyclase AdrA TERM 406 346678 - 346662 - G 81 -10.1 -3.87373 | overlap 346651 346649 346664 CAGACCCGCGACAAA CAGACGG GGG CCGCCTG CCCCCATCAAATTCA TERM 407 346686 - 346664 - G 86 -12.7 -3.5241 | overlap 346651 346649 346662 GACCCGCGACAAACA GACGGGGGC CGCCT GCCCCCATC AAATTCAGACACATA TERM 408 347175 - 347142 - R 71 -7.4 -3.86944 | GGCAGAAGTATGAAA TTTCGGGTGAGCCA TTTTCG TAGCTCACCCGTTA GCACTATCAGGTATC SDY_0359 347982 - 347269 - | IS600 ORF2 TERM 409 348124 - 348166 + r 91 -2.1 -5.92337 | gap 1, overlap 348128 TCGCCATTGTTCGAT TAAC-GCGTATTTTTCAGCG ACTC CTGTGCAAAATACGCTGTTG TTTTTTTTAATATAT psiF 348794 - 348519 - | induced by phosphate starvation TERM 410 348890 - 348859 - H 100 -10.8 -5.63374 | opp_overlap 348859 348859 348881, overlap 348860 348863 CTAACAGCAAAAAAA CCACCCGGCAGCGA AAAT TCACTGCCGGACGC GGTATTATTTCAGCC TERM 411 348889 - 348860 - H 100 -14.3 -3.96398 | opp_overlap 348859 348859 348881, overlap 348859 348863 TAACAGCAAAAAAAC CACCCGGCAGCGA AAAT TCACTGCCGGACG CGGTATTATTTCAGC TERM 412 348886 - 348863 - H 86 -14.6 -2.70863 | opp_overlap 348859 348859 348881, overlap 348860 348859 CAGCAAAAAAACCAC CCGGCAGCGA AAAT TCACTGCCGG ACGCGGTATTATTTC TERM 413 349955 - 349966 + H 93 -7.2 -5.7946 | AATCGGTGACGTAGT CCGG TTTG CCGG TTTTTTTATTCAGCG TERM 414 350066 - 350034 - H 85 -6.9 -5.04385 | GATACCTTTAAAAAA GCCGCCCGCACCT TCGGCAT AATTGCGTGCGGC AGTAATTTCCGAGTC TERM 415 350187 - 350173 - H 72 -9.2 -3.56092 | TGATCACCCGTTAAA CGGCGA GCA CCGCCG GGTGCAGTAATATCG SDY_0362 350676 - 351071 + | iso-IS1 ORF2 TERM 416 351141 - 351127 - T 79 -4.2 -5.21459 | overlap 351129 351137 AAAAATAAAAACAAA GCGACT ATA AGTCTC GGCCGTGACAACTTT yaiB 351444 - 351184 - | hypothetical protein SDY_0364 351891 - 351496 - | iso-IS1 ORF2 TERM 417 352790 - 352780 - g 75 -6.8 -4.42653 | opp_overlap 352779 352780 ATGCCATTGATAAAA GTCG CTT CGAC GTTGTGCTGCTGGGC TERM 418 353575 - 353588 + G 70 -4.5 -4.56597 | GATGCGCAGGCATGG CGCGT GTAG ACGTG TTTTTAACCCCAGAG ddl 352680 - 353774 + | D-alanyl-alanine synthetase A TERM 419 353783 - 353807 + T 93 -10.8 -4.42851 | AATGTAATATTTTAA CGCCCGATAA TATTC TTATTGGGCG TTTTCAGTTTCTTCA SDY_0366 354142 - 353798 - | hypothetical protein TERM 420 354328 - 354356 + G 77 -8.2 -4.13711 | gap 1, overlap 354331 ATCGCAATGCCTCTT CAACGCCT-GGCA ACAT TGCCTATGCGTTG TTTGTGCTGTTTTGC TERM 421 354497 - 354509 + G 81 -6.2 -4.7373 | TGCCGGCACCATTTT CGGG CTGAT CCCG TTTTTAGTAGGCTGC SDY_0367 354270 - 354578 + | hypothetical protein yaiW 355731 - 354637 - | hypothetical protein sbmA 356964 - 355744 - | transport protein TERM 422 358466 - 358439 - g 75 -11.4 -3.07816 | gap 1, opp_overlap 358438 TGGTGACCGAGCTAA GCGGGAATAAACC GTT GGTT-ATCCCCGC ATCCTTATTAATACT yaiH 357316 - 358485 + | beta-lactamase/D-alanine carboxypeptidase TERM 423 358483 - 358519 + T 86 -11.8 -3.55866 | gap 1, opp_overlap 358494, overlap 358487 TCCTTATTAATACTC TGAAGGCAAAC-GGTTG ATAG CGACCAGTTTGCCTTTA TTCATTTCGATATAG TERM 424 358487 - 358515 + T 93 -10.4 -4.40298 | gap 1, opp_overlap 358494, overlap 358483 TATTAATACTCTGAA GGCAAAC-GGTTG ATAG CGACCAGTTTGCC TTTATTCATTTCGAT SDY_0371 358707 - 358474 - | hypothetical protein SDY_0372 359170 - 359565 + | iso-IS1 ORF2 yaiV 359916 - 359575 - | hypothetical protein TERM 425 359889 - 359918 + g 100 -18.1 -3.78409 | opp_overlap 359892, overlap 359892 GCGCGTCCTTTGCAG TAATGCCCGTCAA ATCC TTGACGGGCATTA TTTAGATTAAATTAC TERM 426 359915 - 359892 - G 100 -15.4 -3.14132 | opp_overlap 359889 359892 CGTCCTTTGCAGTAA TGCCCGTCAA ATCC TTGACGGGCA TTATTTAGATTAAAT TERM 427 359892 - 359915 + g 100 -15.4 -4.01381 | opp_overlap 359892, overlap 359889 CGTCCTTTGCAGTAA TGCCCGTCAA ATCC TTGACGGGCA TTATTTAGATTAAAT insB 360382 - 360005 - | IS1 ORF2 insA 360702 - 360427 - | IS1 ORF1 SDY_0377 361480 - 361875 + | iso-IS1 ORF2 TERM 428 362036 - 362058 + T 83 -9 -4.24569 | opp_overlap 362035 362037, overlap 362032 362037 TTCCTTACGCGAAAT ACGGGCAGAC ATG GCCTGCCCGG TTATTATTATTTTTG TERM 429 362057 - 362037 - T 93 -14.7 -3.38046 | opp_overlap 362037 362036 362032, overlap 362035 TCCTTACGCGAAATA CGGGCAGAC ATG GCCTGCCCG GTTATTATTATTTTT TERM 430 362037 - 362057 + T 81 -12.5 -3.12301 | opp_overlap 362035 362037, overlap 362036 362032 TCCTTACGCGAAATA CGGGCAGAC ATG GCCTGCCCG GTTATTATTATTTTT lacZ 364974 - 362065 - | beta-D-galactosidase TERM 431 364581 - 364591 + g 81 -8.2 -4.37092 | AGCGCAGCACCATCA CCGC GAG GCGG TTTTCTCCGGCGCGT lacI 366345 - 365263 - | lac repressor SDY_0380 366864 - 366382 - | hypothetical protein TERM 432 367181 - 367139 - g 100 -2.1 -5.92337 | gap 1, overlap 367144 ATATATTAAAAAAAA CAACAGCGTATTTTGCACAG GAGT CGCTGAAAAATACGC-GTTA ATCGAACAATGGCGA SDY_0381 366880 - 367182 + | IS600 ORF1 SDY_0382 367323 - 368036 + | IS600 ORF2 TERM 433 368115 - 368104 - g 95 -5.8 -5.44119 | overlap 368105 TCGATGTCAAAAAAA TGCC ACTC GGCA GCGTCACCAAGATCT cof 368064 - 368510 + | hypothetical protein TERM 434 368528 - 368543 + F 100 -6 -5.86332 | AGATCCCTTCCAGCA CCGGAC AATT GCCCGG TTTTTTTTGCGTTGA TERM 435 368657 - 368646 - g 100 -4.4 -5.9362 | overlap 368636 368648 TAAAAGAGAAAAAAA TTCC CTGT GGAA GGGCTATGTTAGATA TERM 436 368854 - 368841 - g 74 -2.3 -5.03314 | TGGATCCGGAAAAAA TAGGC CTCG GCCTG ACCGCCTTTGTGCTG ybaO 368576 - 369121 + | putative LRP-like transcriptional regulator mdlA 369151 - 370923 + | putative multidrug transporter membrane\ATP-binding components mdlB 370916 - 372697 + | putative multidrug transporter membrane\ATP-binding components TERM 437 372734 - 372757 + F 89 -8.9 -4.67038 | opp_overlap 372729 372734 GGTGCAAAAATGTAA CGCACTGTG CACTGT CATAGTGCG TTTTCATTTTCAAAC glnK 372878 - 373216 + | nitrogen regulatory protein P-II 2 TERM 438 373388 - 373401 + G 70 -5.9 -4.15453 | overlap 373399 TGTTTATGACTATTC CGGGG ATTG CCCTG TTTTACGGTGGGTTG amtB 373246 - 374532 + | ammonium transporter TERM 439 374575 - 374549 - T 100 -9.5 -5.07053 | gap 1, opp_overlap 374549 374551, overlap 374551 AAGCACTGCAAAAAA CAGCCGGACGGT TTTC ACC-TCCGGCTA TTTTTTTAATTGTGA TERM 440 374549 - 374575 + T 93 -7.3 -5.68023 | gap 1, opp_overlap 374549 374551, overlap 374551 AAGCACTGCAAAAAA CAGCCGGACGGT TTTC ACC-TCCGGCTA TTTTTTTAATTGTGA TERM 441 374551 - 374573 + T 90 -9.9 -4.46828 | gap 1, opp_overlap 374549 374551, overlap 374549 GCACTGCAAAAAACA GCCGGACGGT TTTC ACC-TCCGGC TATTTTTTTAATTGT TERM 442 374573 - 374551 - T 83 -9.9 -4.15748 | gap 1, opp_overlap 374551 374549, overlap 374549 GCACTGCAAAAAACA GCCGGACGGT TTTC ACC-TCCGGC TATTTTTTTAATTGT tesB 375441 - 374581 - | acyl-CoA thioesterase II TERM 443 375471 - 375461 - R 74 -6.8 -4.24342 | overlap 375462 CTCTCCAGTAACAAA GCTG CCG CAGC AAGCCAAAGTGAGTT TERM 444 376238 - 376265 + r 90 -15 -2.71364 | opp_overlap 376236 376233 376232, overlap 376242 CAATATTAAGCGACG TTAACCCTCTCC GCCC GGAGAGGGTTAG TAGTTCCAGCGATAA TERM 445 376242 - 376261 + r 86 -13.6 -3.27298 | opp_overlap 376236 376233 376232, overlap 376238 ATTAAGCGACGTTAA CCCTCTCC GCCC GGAGAGGG TTAGTAGTTCCAGCG ybaZ 376651 - 376262 - | hypothetical protein TERM 446 376655 - 376645 - G 72 -6.8 -4.16016 | GCATTGCGCAAGAAA CCAG CAT CTGG CACGCAATGGGTTGC ybaA 376952 - 377305 + | hypothetical protein ylaB 378660 - 377347 - | hypothetical protein TERM 447 377765 - 377783 + g 80 -5.2 -5.02074 | TAGTGATTGATCATT TCACGCAG CAA TTGCGGGA TTTTTTCCGAGGTGA insA 378730 - 379005 + | IS1 ORF1 gcl 380921 - 379362 - | glyoxylate carboligase TERM 448 380484 - 380536 + g 70 -6.1 -4.25848 | opp_overlap 380484 ACGCATCAAGTGAAA TGCCTGTTGCAGCACGCGAGGCACC AGC GCCGCTTCACGTACTGTAACCGCCA TTTTGCTGACCGGTT TERM 449 380536 - 380484 - G 72 -8.3 -3.78597 | opp_overlap 380484 ACGCATCAAGTGAAA TGCCTGTTGCAGCACGCGAGGCACC AGC GCCGCTTCACGTACTGTAACCGCCA TTTTGCTGACCGGTT TERM 450 380998 - 380981 - R 100 -12.7 -5.40474 | ATTTTGTCAAAAAAA CCCGCTC CGCA GAGCGGG ATGCGACAGACATTA ybbU 381826 - 381011 - | DNA-binding transcriptional repressor AllR ybbT 382386 - 381904 - | ureidoglycolate hydrolase TERM 451 382594 - 382579 - H 73 -4 -4.82819 | gap 1, opp_overlap 382579, overlap 382582 CAGAGGATAAGAAAA TCACGCA ACT TGCG-GA TTTAAAAGGGATACC ybbS 382615 - 383541 + | DNA-binding transcriptional activator AllS TERM 452 384230 - 384217 - g 72 -4.5 -4.70879 | CCGAAATGCTAAAAA CCGAC GCCC GTCAG AATTTGCGCCTGTGG ybbB 383610 - 384704 + | tRNA 2-selenouridine synthase SDY_0400 384784 - 385191 + | hypothetical protein TERM 453 385378 - 385393 + F 78 -6.2 -4.67048 | GGCAAGAATTTATTT TAATCC GGAA GGATTA TTTATTTTCAGATAG insA 385896 - 386171 + | IS1 ORF1 insB 386216 - 386593 + | IS1 ORF2 TERM 454 386779 - 386765 - Tf 73 -11.4 -2.6999 | overlap 386756 386760 386757 CGAAAAGCGACAGCA GCAGCG CAC CGCTGC ACGGCAGAACAATCC TERM 455 388623 - 388613 - Tf 76 -8.2 -4.11484 | opp_overlap 388613 TGGAAGGGGTTAAAA CCGG AAT CCGG TTCCTGAATCACTTC ybbA 389786 - 389100 - | putative ABC transporter ATP-binding protein YbbA TERM 456 389539 - 389510 - Gf 72 -4.3 -4.72386 | gap 1, opp_overlap 389525 389526 TAAACGACTGAAAAA CAAAGCCTACGTGC TTC GCGCGCAA-CTTTG CCCGCGCTTCTTCGT TERM 457 389820 - 389840 + GH 78 -9 -3.86312 | gap 1 GTCCTGTTAACCTTC CGTG-CCGC CGCA GCGGACACG TTATTGATTCTGGGT TERM 458 390084 - 390053 - gH 78 -12.4 -2.71011 | gap 1, opp_overlap 390044, overlap 390083 ACTGGGCGGCAATGA CGGTTTGC-GTGGTT TTC AGCCACAGCAAACCG AGCAAACGCTGCGCC tesA 389754 - 390380 + | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 ybbO 390370 - 391179 + | short chain dehydrogenase ybbN 391204 - 392094 + | putative thioredoxin-like protein TERM 459 392154 - 392121 - T 100 -16.8 -2.81547 | opp_overlap 392128 392129, overlap 392124 TCGGCACATGAACCA CAACGCCGGATGCG ATGCTG CGCATCCGGCATCG CATCATTTCTTCTTC TERM 460 392151 - 392124 - T 95 -14.9 -3.55487 | opp_overlap 392128 392129, overlap 392121 GCACATGAACCACAA CGCCGGATGCG ATGCTG CGCATCCGGCA TCGCATCATTTCTTC TERM 461 392128 - 392159 + T 95 -10.9 -4.4846 | opp_overlap 392124 392121, overlap 392129 ATGAACCACAACGCC GGATGCGATGCTG CGCATC CGGCATCGCATCA TTTCTTCTTCAATTG TERM 462 392129 - 392158 + T 90 -14.4 -3.27992 | opp_overlap 392124 392121, overlap 392128 TGAACCACAACGCCG GATGCGATGCTG CGCATC CGGCATCGCATC ATTTCTTCTTCAATT TERM 463 392172 - 392198 + T 73 -10.9 -2.59742 | overlap 392171 TCATTTCTTCTTCAA TTGCGTCACCA CCAAC TGGTGGCGCGA ATTATAAAACTTACG ybbM 392963 - 392157 - | putative metal resistance protein ybbL 393600 - 392923 - | putative ABC transporter ATP-binding protein YbbL TERM 464 393865 - 393842 - g 72 -9.7 -3.33969 | CAATGGACGGTAGAA CGTTTTGGT CGCTAT ACCAAAACG TTACAGCCGGGGCTC ybbK 393746 - 394663 + | putative protease ybbJ 394660 - 395118 + | hypothetical protein SDY_0412 395560 - 395198 - | hypothetical protein SDY_0413 396165 - 395950 - | iso-IS1 ORF2 SDY_0414 396652 - 397047 + | iso-IS1 ORF2 ybbI 397603 - 397196 - | DNA-binding transcriptional regulator CueR TERM 465 397560 - 397578 + g 73 -3.8 -4.7497 | TAGAAGCGAATGGCT TTGCTGGT CAG GCCGGTAA TTTTTGCTACATCGC SDY_0416 398775 - 397600 - | putative membrane spanning export protein SDY_0417 400298 - 398772 - | putative cytoplasmic membrane export protein TERM 466 399004 - 399020 + g 70 -10.1 -3.14132 | GCTTCCGCCATTTCG TCCAGCG AGG CGCTGGG TTCATCAAGCAGCAC SDY_0418 400677 - 400306 - | hypothetical protein TERM 467 400544 - 400577 + g 74 -6.5 -4.4648 | overlap 400545 CGCGCGTCAGGGATG GCGCTGAGCGGGCGC AGTA GCGCCAGTTCGACGA TTTTATCCTCAACAT TERM 468 400545 - 400576 + g 70 -10 -3.27406 | overlap 400544 GCGCGTCAGGGATGG CGCTGAGCGGGCGC AGTA GCGCCAGTTCGACG ATTTTATCCTCAACA SDY_0419 400932 - 400720 - | hypothetical protein TERM 469 400898 - 400859 - G 75 -5 -4.82901 | gap 1, overlap 400861 TTCTCCTGAGAAAAA TCGAGCCGATAATAGCGCG CCA CG-GCGATCATCGCCTCCA GCCAGGCTTCCACGG SDY_0420 402270 - 400936 - | hypothetical protein TERM 470 401075 - 401099 + g 72 -10.1 -3.35597 | opp_overlap 401096, overlap 401074 GTGTCGCTGCCGCTC TGGGTGACTTT GAC AAAGTCACCGA TGTTTCCGGCCTGCG SDY_0421 402999 - 402334 - | hypothetical protein SDY_0422 407500 - 403103 - | hypothetical protein TERM 471 403212 - 403232 + g 70 -6.2 -4.2803 | gap 1, overlap 403212 TTCGCCGCTTCCGGG C-TGGTGGT ATCG ACCACCACG TTTTGCGTTGCGGTC SDY_0423 411472 - 407525 - | hypothetical protein TERM 472 407928 - 407961 + g 79 -10.2 -3.72576 | ACGGTGACCGTATCG CCATCGGCGGCGCG AGTCAC CACCCCGCTGATGG TTTGATCGGCCCCCG TERM 473 408185 - 408199 + g 73 -3.5 -4.73388 | ACTGCTACCGCTAAT GGTCA ACGGC TGGCC TTTTTCATCGGCGTT TERM 474 408594 - 408607 + g 78 -9.5 -3.91897 | opp_overlap 408593 408589 TTGTGATTAACCGAG GCCGG GTTT CCGGC TTTGTCGCTCACCGC TERM 475 408915 - 408957 + g 82 -13.2 -2.94099 | opp_overlap 408909 CCGTTAACATTGCTG ACGCTGGCCTGCGCGCTGGC ATC GCCATCGCGCAGGGCTGCCA TATCTGCTGCCGGAA TERM 476 410479 - 410517 + g 70 -10.9 -2.71364 | gap 1, overlap 410488 TCAGATTCACGGTGA CCG-TGCGGCTGGCGTCA TCGC TGTTGCCTGCCGCGTCGG TAATTGCCGCAGTGA SDY_0424 412979 - 411486 - | hypothetical protein TERM 477 412004 - 412024 + gr 82 -11.1 -3.53444 | TATTACCCGCCGCAT CAGTCACCG TGG CGGTGACAG TTTGCGGGCCGCTAC TERM 478 412688 - 412716 + gr 72 -5.1 -4.56597 | overlap 412688 412691 412697 CGGTGGCAGTCCAGC TACCATCGCCCGC CAC GCTGGCGGTGTAA TTTTTACCGCCAAAG TERM 479 412691 - 412713 + gr 77 -11.2 -3.23708 | overlap 412688 412688 412697 TGGCAGTCCAGCTAC CATCGCCCGC CAC GCTGGCGGTG TAATTTTTACCGCCA TERM 480 412697 - 412711 + gr 77 -11.4 -3.18031 | overlap 412691 412688 412688 TCCAGCTACCATCGC CCGCCA CGC TGGCGG TGTAATTTTTACCGC SDY_0425 415765 - 412889 - | hypothetical protein TERM 481 413150 - 413193 + gr 77 -10.5 -3.40173 | gap 3, opp_overlap 413149 413147, overlap 413147 413189 GTTAATACCAATCAC CGGAGCGG-CAGT-GTTGACCG TGA CGGTCAATGACTGGCTGC-CCG TGTTTCCGGCTTTGT TERM 482 413980 - 414009 + gr 84 -13.7 -2.66316 | opp_overlap 413978 413977, overlap 413962 413977 TGCTACCGATAAGGG TCAGTGGCGCA CCTTTTTC TGCGCCACTGA TAATGTCATCGCCGG TERM 483 414792 - 414810 + gr 76 -7.4 -4.24002 | overlap 414781 CAGGCACCGTTAGCG CCTACGCT GGT GGTGTAGG TTTTGCCGTTTAGCG SDY_0426 416036 - 415836 - | hypothetical protein SDY_0427 416231 - 416626 + | iso-IS1 ORF2 SDY_0428 416936 - 416643 - | hypothetical protein SDY_0429 417566 - 416946 - | hypothetical protein TERM 484 417055 - 417029 - G 81 -10 -3.86346 | opp_overlap 417018, overlap 417030 GCACCTGGGCAGAAA CCGCGCCGCCCT GAT ACAGCGGCGCGT TAACGTTCAGTTGTA TERM 485 417054 - 417030 - G 82 -13.5 -2.91593 | opp_overlap 417018, overlap 417029 CACCTGGGCAGAAAC CGCGCCGCCCT GAT ACAGCGGCGCG TTAACGTTCAGTTGT insA 417654 - 417929 + | IS1 ORF1 insB 417974 - 418351 + | IS1 ORF2 TERM 486 418501 - 418477 - T 90 -10 -4.40184 | overlap 418478 TGAATTAAAGACAAA GGCGCAGTAC AGGCA GTACTGCGCG CAGAGAGGTGTTATA TERM 487 418500 - 418478 - T 83 -13.5 -3.23026 | overlap 418477 GAATTAAAGACAAAG GCGCAGTAC AGGCA GTACTGCGC GCAGAGAGGTGTTAT ybaT 419804 - 418512 - | putative amino acid/amine transport protein ybaR 421002 - 423506 + | copper exporting ATPase ybaQ 424015 - 423620 - | hypothetical protein TERM 488 424297 - 424278 - g 73 -3.5 -4.7657 | CAAAAAGCTCAAAAA CGCCGAT GCGCTG ATCGTCG AGGCGGATGTTTCCA ybaP 424099 - 424893 + | putative ligase TERM 489 424920 - 424899 - f 90 -7.3 -5.40072 | overlap 424900 GTTGCGCTAAAAAAA TGGCCAATA TCAC TATTGGCCC GTCAAAGAGGAATTT TERM 490 424919 - 424900 - f 83 -10.8 -3.83561 | overlap 424899 TTGCGCTAAAAAAAT GGCCAATA TCAC TATTGGCC CGTCAAAGAGGAATT TERM 491 425438 - 425427 - g 79 -2.2 -5.24129 | CTGGGGCAGAAAAAA CGTC TGCC AACG ATTATCGACGCCCCT ybaK 425097 - 425576 + | hypothetical protein TERM 492 425582 - 425605 + T 95 -13.2 -3.67976 | opp_overlap 425580 425577 425598, overlap 425598 CCGCGATTAAGCATT GTGCCGGATG CAAA TATCCGGCAC TTTCGGATTACTGCC ushA 427265 - 425613 - | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 493 427517 - 427502 - R 74 -6.8 -4.23045 | gap 1, overlap 427503 427506 CAATGAGTGAACAAA CCCAGCC TGT GGC-GGG CGCGGCTGCGTCAAC TERM 494 427698 - 427727 + r 89 -9.3 -4.59109 | overlap 427700 CACCTTCCAGCTCTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 495 427700 - 427725 + r 100 -16.3 -3.90762 | overlap 427698 CCTTCCAGCTCTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SDY_0440 429055 - 427709 - | IS4 orf TERM 496 429045 - 429070 + g 73 -9.1 -3.61398 | opp_overlap 429045 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 497 429070 - 429045 - G 100 -9.8 -5.61596 | opp_overlap 429045 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 498 429237 - 429256 + H 73 -7.8 -4.10007 | TTAAGTGGTCTGGTG CTGCTTGC GCTG GCGGGCAG TTTTGGCGCAGTTCT TERM 499 429824 - 429836 + H 83 -10.5 -3.66424 | TTGGGGCTCTATCCT CGGCG TTG CGCCG TTTACGCTGATTTTA TERM 500 430146 - 430178 + H 87 -10.6 -4.13945 | opp_overlap 430137, overlap 430149 CATAAAGACTGATTT CATTGCAGCCAAAG GCAAA CTTTGGCTGCATCG TTTTACAGTCGCCAT TERM 501 430149 - 430175 + H 93 -15.3 -3.09831 | opp_overlap 430137, overlap 430146 AAAGACTGATTTCAT TGCAGCCAAAG GCAAA CTTTGGCTGCA TCGTTTTACAGTCGC ybaL 430380 - 432056 + | putative cation:proton antiport protein TERM 502 432171 - 432142 - T 77 -12.1 -2.7814 | opp_overlap 432107 432151, overlap 432107 432106 432141 ATCGAGATGCCAAAT GCCAGATGCGGCG TGAA CGCCTTATCTGGC CTACGAACCGACGAT gsk 433494 - 432190 - | inosine-guanosine kinase TERM 503 432563 - 432584 + g 78 -7.9 -4.37198 | opp_overlap 432551 AATTCCGCTATAGCG CCCGGCAGC AGCG GATGCTGGG TTTTACGTTTCGCTT hemH 435564 - 434602 - | ferrochelatase TERM 504 434634 - 434679 + g 76 -4.1 -5.00616 | overlap 434636 434640 CAAGATTAGCCATCA TTTCGATATGTTCCGGCGT GGCATTAA GCGCCGGAATATATTCATA TTTTTTCCCGCCGGC TERM 505 434636 - 434677 + g 70 -6.7 -4.13561 | overlap 434634 434640 AGATTAGCCATCATT TCGATATGTTCCGGCGT GGCATTAA GCGCCGGAATATATTCA TATTTTTTCCCGCCG TERM 506 434640 - 434673 + g 77 -9.7 -3.66995 | overlap 434636 434634 TAGCCATCATTTCGA TATGTTCCGGCGT GGCATTAA GCGCCGGAATATA TTCATATTTTTTCCC adk 436340 - 435696 - | adenylate kinase TERM 507 436488 - 436515 + r 93 -15.7 -3.05384 | opp_overlap 436488 TAATGAAAAGAAAAA TGCCGGATGAC ACGAAG GTCATCCGGCA TTACATCAGGAAACC TERM 508 436515 - 436488 - R 100 -15.7 -5.54338 | opp_overlap 436488 TAATGAAAAGAAAAA TGCCGGATGAC ACGAAG GTCATCCGGCA TTACATCAGGAAACC htpG 438395 - 436521 - | heat shock protein 90 TERM 509 437269 - 437285 + g 81 -7.3 -4.60487 | overlap 437271 ACCAGGCCAAACTGT TGCCAGA AGG TCTGGTA TTTTTCCGCGTCGTC TERM 510 437271 - 437283 + g 72 -7.7 -3.91506 | overlap 437269 CAGGCCAAACTGTTG CCAGA AGG TCTGG TATTTTTCCGCGTCG TERM 511 437934 - 437954 + g 70 -4 -4.62069 | TTCGCCAGCCGATTC CCAGAACA CGCCA TTTTCTGG TTTTTCGCCTGCCGC TERM 512 438505 - 438470 - R 72 -10.4 -2.90804 | opp_overlap 438476 438497, overlap 438469 438479 ACAAGGGAGAATAAT TTCAAGCGAGAGCAGG TGAT CCTGCTCTCGTTTGCT TAAAAACGAATCTTA TERM 513 438476 - 438499 + r 100 -16.8 -3.90112 | opp_overlap 438470 438469 438479, overlap 438497 GAGAATAATTTCAAG CGAGAGCAGG TGAT CCTGCTCTCG TTTGCTTAAAAACGA TERM 514 438496 - 438479 - R 73 -11.3 -2.55818 | opp_overlap 438476, overlap 438470 438469 AATAATTTCAAGCGA GAGCAGG TGAT CCTGCTC TCGTTTGCTTAAAAA recR 439110 - 438505 - | recombination protein RecR TERM 515 438690 - 438701 + g 87 -4.4 -5.21709 | GGTTGGTGGCGAGGA TCAC TTCA GTGA TTTTTTCCTCTGCCA TERM 516 439033 - 439071 + g 73 -11.7 -2.75382 | gap 1, overlap 439030 CGTGAACGCCATACG CTGTGCCGACT-TCGGGC CCAC GCCCGACAGACAGCGCAG TGCTTCCATAAGCTG ybaB 439439 - 439110 - | hypothetical protein TERM 517 439366 - 439378 + g 91 -3.4 -5.49234 | TGCGCGATCTCTTCC TGCA TTTTC TGCA TTTTTTCTTGCATCT TERM 518 439490 - 439474 - R 77 -10.9 -3.25015 | GTTAAGGATGACGAA CGTAAGC TGT GCTTACG ATCAAATGGGGCGGA dnaX 441423 - 439492 - | DNA polymerase III subunits gamma and tau TERM 519 439576 - 439593 + g 95 -6.9 -5.17744 | opp_overlap 439576 439573 ATCCGCAATAATGGA CTCGCGC GCCT GCGCAAG TTTTTCTTCGTATAT TERM 520 439748 - 439788 + g 100 -15.7 -3.56594 | gap 2, opp_overlap 439740 439760 TTCAAATGCCGCTGA GAGGAGCGC-A-AACGCAG ACATA CTGCGTTGTCGCGCTCCTC TTTCCAGGCATTTAA TERM 521 439891 - 439907 + g 93 -6.5 -5.27779 | TTCTGCCGCTAGCTT CGCCG CCAGTTC CGGCG TTTTTTCATGTTCCA TERM 522 439943 - 439959 + g 75 -4.3 -4.7497 | overlap 439946 TTTTTCAGCGCCTTC GGCGTGG CGA CCACTTC TTTTTGCTGCATCAC TERM 523 439946 - 439956 + g 77 -6.8 -4.4831 | overlap 439943 TTCAGCGCCTTCGGC GTGG CGA CCAC TTCTTTTTGCTGCAT TERM 524 440100 - 440127 + g 76 -10.5 -3.36112 | gap 1 GCGCAGCGTTATTCA CCGGCCGCGCGC AGGTA GCG-GCTGCCGG TTCACTCTTTTTTGC TERM 525 440181 - 440201 + g 74 -10.4 -3.53224 | overlap 440179 GCAACTGCTGGCGCG CCGCCAGC ACCTG GCTGGTGG TTTCCGGGAGCGGTA TERM 526 440989 - 440999 + g 78 -5.4 -4.77438 | AACGTGCTCCGGCGG CTCT TCA AGAG TTTTTAATAGTGCGT TERM 527 441241 - 441269 + g 72 -5.2 -4.56597 | gap 1 GGTTTCGCAGTTTAG CCCCT-TCGCCAG CAGT CGGGCGATAGAGG TTTTTCCGACGCCAC TERM 528 441500 - 441476 - R 70 -9.9 -3.09492 | opp_overlap 441499, overlap 441461 441478 441490 GGGGTAATGCTAACA CAGCCCCGTCA GAA CGGCGAGGCTG AATGCACATCTTGTG apt 442103 - 441552 - | adenine phosphoribosyltransferase ybaN 442633 - 442256 - | hypothetical protein priC 442703 - 443230 + | primosomal replication protein N'' ybaM 443244 - 443408 + | hypothetical protein TERM 529 443413 - 443440 + T 100 -15 -3.51825 | opp_overlap 443413, overlap 443417 AAAGCGAGTAAAAAA TAAAGGGCGGCA TCAC TGTCGCCCTTTA TTGTCCTTACCCTAC TERM 530 443440 - 443413 - T 100 -12.8 -5.19261 | opp_overlap 443413 443417 AAAGCGAGTAAAAAA TAAAGGGCGGCA TCAC TGTCGCCCTTTA TTGTCCTTACCCTAC TERM 531 443417 - 443436 + T 95 -11.4 -4.3953 | opp_overlap 443413, overlap 443413 CGAGTAAAAAATAAA GGGCGGCA TCAC TGTCGCCC TTTATTGTCCTTACC aefA 446809 - 443447 - | potassium efflux protein KefA TERM 532 444973 - 444983 + g 93 -8.2 -4.86001 | TACCAAAGTGACGCA CGGC AAC GCCG TTTTTCTCCAATACT TERM 533 445993 - 446007 + g 79 -4.2 -5.15969 | overlap 445971 CTTCATCCGGGGAGA CGGC TTCCTGC GCCG TTTTTTCGGTTAAAG TERM 534 446514 - 446527 + g 70 -3.7 -4.62783 | overlap 446519 TGGCGCATTTTTTCC GGCGC TTCA GCGAC TTTTTGCCGTAGCTG acrR 447584 - 446937 - | DNA-binding transcriptional repressor AcrR TERM 535 447755 - 447737 - g 93 -6 -5.17744 | opp_overlap 447747 ACATATGAACAAAAA CAGAGG GTTTACG CCTCTG GCGGTCGTTCTGATG acrA 447726 - 448919 + | acridine efflux pump TERM 536 449068 - 449029 - g 100 -15.8 -3.57144 | CTGGCGATCCTCAAA CTGCCGGTGGCGCAAT ATCCTACG ATTGCACCGCCGGCAG TAACGATCTCCGCCT TERM 537 450771 - 450750 - g 79 -4.4 -4.93877 | TCTGACCAAAGAAAA GAACAACG TTGAGT CGGTGTTC GCCGTTAACGGCTTC TERM 538 452020 - 452037 + G 71 -9.1 -3.53091 | GTTCCGGTATTCTTT GTGGTGG TTCG CCACCGC TTTAGCCGCAAGAAT acrB 448942 - 452091 + | acridine efflux pump TERM 539 452111 - 452126 + F 100 -11.8 -5.28176 | opp_overlap 452111 ACGTGTAATCACTAA GGCCGC GTAA GCGGCC TTTTTTATGCATAAC TERM 540 452126 - 452111 - f 79 -11.8 -3.27476 | opp_overlap 452111 ACGTGTAATCACTAA GGCCGC GTAA GCGGCC TTTTTTATGCATAAC ybaJ 452637 - 453011 + | hypothetical protein hha 453037 - 453255 + | hemolysin expression-modulating protein ylaD 453427 - 453978 + | maltose O-acetyltransferase TERM 541 454453 - 454467 + G 77 -11.4 -3.13403 | opp_overlap 454443, overlap 454452 AGCCATCTTGAACTC TCCGCG TGT CGCGGA TGTTCATAAGGAACA ylaC 454055 - 454564 + | hypothetical protein SDY_0462 454728 - 454928 + | hypothetical protein SDY_0463 455017 - 455382 + | insertion sequence 2 OrfA protein SDY_0464 455340 - 456245 + | insertion element IS2 transposase InsD insB 456688 - 456311 - | IS1 ORF2 insA 457008 - 456733 - | IS1 ORF1 SDY_0467 457321 - 457623 + | IS911 ORF1 TERM 542 457729 - 457709 - gf 72 -4.6 -4.65838 | CAGATACTGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT SDY_0468 457650 - 458000 + | IS911 ORF2 TERM 543 458082 - 458071 - gf 77 -5.8 -4.63218 | opp_overlap 458076 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SDY_0469 457969 - 458490 + | IS911 ORF2 SDY_0470 458968 - 459363 + | iso-IS1 ORF2 SDY_0471 460157 - 459360 - | hypothetical protein TERM 544 460532 - 460586 + r 88 -8.4 -4.86731 | opp_overlap 460520 460532 CAAGGTTAAAACTAA CCGGGCGATGCGTCAATGGCCTTGTG AAT CAAATGGCTACTTTTGCATCACCCGG TTTTATTTACGCACG TERM 545 460586 - 460532 - R 72 -8.4 -3.69437 | opp_overlap 460532, overlap 460520 CAAGGTTAAAACTAA CCGGGCGATGCGTCAATGGCCTTGTG AAT CAAATGGCTACTTTTGCATCACCCGG TTTTATTTACGCACG proA 461846 - 460593 - | gamma-glutamyl phosphate reductase proB 462961 - 461858 - | gamma-glutamyl kinase insA 463189 - 463464 + | IS1 ORF1 insB 463509 - 463886 + | IS1 ORF2 TERM 546 463929 - 463953 + T 72 -10.7 -2.78679 | opp_overlap 463926, overlap 463929 CAGTTTTAATGATTA TTGCCGGATGT GAT GCATCCGGCAC ATTTCACTCACGCCG TERM 547 463929 - 463954 + T 72 -9.1 -3.64822 | gap 1, opp_overlap 463926, overlap 463929 CAGTTTTAATGATTA T-TGCCGGATGT GAT GCATCCGGCACA TTTCACTCACGCCGT crl 464362 - 463961 - | DNA-binding transcriptional regulator Crl frsA 465664 - 464420 - | fermentation/respiration switch protein TERM 548 465139 - 465116 - G 72 -4.4 -4.70659 | overlap 465117 CGGCATATGCAAAAA GCCGGTGATG GGCG CACCGCCGGG TACGGTAAACTCCAT TERM 549 465752 - 465722 - R 84 -7.4 -4.74103 | overlap 465725 GCCTGAAGTTAAAAA GAACAACGCCCGGC AGT GCCAGGCGTTGAAA AGATTAGCGACCGGA TERM 550 465749 - 465725 - R 100 -17.9 -4.47888 | overlap 465722 TGAAGTTAAAAAGAA CAACGCCCGGC AGT GCCAGGCGTTG AAAAGATTAGCGACC gpt 466214 - 465756 - | xanthine-guanine phosphoribosyltransferase TERM 551 466494 - 466517 + G 90 -9 -4.57837 | gap 1, opp_overlap 466496 CTGAACTGTCTCAAT TATCTCCACAG CCG CTGTGG-GATA TTTTTGCCAAAATCT TERM 552 466877 - 466867 - g 72 -6.8 -4.25104 | TCTGGCTGACGAAAA CGTG GTT CACG GTCCGCTGGAAGTGC TERM 553 467813 - 467792 - g 71 -2.2 -5.00616 | opp_overlap 467792 GGTCTGTTCAAAAAA CCGTATCC GGAAAT GGACATGG TTTCTATCGGGCCAA pepD 466475 - 467932 + | aminoacyl-histidine dipeptidase TERM 554 467945 - 467976 + T 100 -17.3 -3.86776 | TAATTATTTGATTTG CTGCCGGATGGCG TTTAAT CGCCTTCCGGCAG TTTCATCCTTCATTA prfH 468489 - 467989 - | peptide chain release factor-like protein SDY_0482 468724 - 468458 - | hypothetical protein dinP 470535 - 469480 - | DNA polymerase IV mbhA 471385 - 470606 - | hypothetical protein SDY_0485 472275 - 471532 - | putative flagellar motor transmembrane channel protein SDY_0486 472497 - 472892 + | iso-IS1 ORF2 insA 473162 - 473449 + | IS1 ORF1 SDY_0488 473945 - 475327 + | hypothetical protein TERM 555 475660 - 475695 + G 84 -11.2 -3.71873 | gap 1, opp_overlap 475671 CAGCTCGGCGAGATG GTGGTCGAA-GAGCCGG TAT CCGGTTCATTTGCCCAC TTTGCCTATAAATAC pheP 475429 - 476805 + | phenylalanine transporter TERM 556 476837 - 476863 + T 100 -16.7 -5.65513 | opp_overlap 476835 476834 476832 CCGACAAAACGATGT CCGCTCTCATC CATTC GATGAGAGCGG TTTTTTTAATTACTG ybdG 478120 - 476873 - | putative transport TERM 557 478220 - 478199 - R 82 -11.5 -3.61103 | overlap 478201 GAATCTGAGGGGAAA TAGCCGGGC AGAT GCCCGGCAA GAGAGAATTACACTT TERM 558 478218 - 478201 - R 90 -14.1 -3.38224 | overlap 478199 ATCTGAGGGGAAATA GCCGGGC AGAT GCCCGGC AAGAGAGAATTACAC nfnB 478881 - 478228 - | dihydropteridine reductase ybdF 479343 - 478975 - | hypothetical protein ybdJ 479656 - 479408 - | hypothetical protein ybdK 480840 - 479722 - | carboxylate-amine ligase TERM 559 480412 - 480399 - G 82 -8.1 -4.49556 | CGTGCAGCAAATAAA TGGCG TCAT CGCCA CTGGCACAGCCAACA TERM 560 481432 - 481463 + r 71 -10.8 -2.59564 | opp_overlap 481431, overlap 481432 GAACCGAAGAAGTAG CCGTTGTGCGGGGA GTAA TCCCCGCATATCCG GTTGTCAGGTCAGGA TERM 561 481432 - 481464 + r 77 -10.6 -3.32963 | gap 1, opp_overlap 481431, overlap 481432 GAACCGAAGAAGTAG CC-GTTGTGCGGGGA GTAA TCCCCGCATATCCGG TTGTCAGGTCAGGAT TERM 562 481503 - 481532 + r 100 -17.9 -4.19735 | ACCTGCTTTACACTT TCGCCCGCGGTCA GTGA TGGCTGCGGGCGA TTTCGTTTTAAGAGC SDY_0495 482669 - 481764 - | insertion element IS2 transposase InsD SDY_0496 482992 - 482627 - | insertion sequence 2 OrfA protein SDY_0497 483003 - 483995 + | hypothetical protein SDY_0498 484134 - 484817 + | hypothetical protein insA 484868 - 485143 + | IS1 ORF1 insB 485188 - 485565 + | IS1 ORF2 hemB 485847 - 486854 + | delta-aminolevulinic acid dehydratase tauD 487812 - 486961 - | taurine dioxygenase TERM 563 487637 - 487625 - G 81 -9.1 -4.08767 | opp_overlap 487618 TGCAGTTCGCCAAAA CGCTG GGC CAGCG CGCGTTGCTGCTGCG tauC 488636 - 487809 - | taurine transporter subunit TERM 564 487908 - 487878 - G 88 -8.2 -4.65933 | CAGTTCTAAAAGAAA GGCGATAATCGCAA TCA CCGCGATCCCCGCC AGCACCACGTCAGTC TERM 565 487975 - 487963 - G 84 -10.5 -3.74749 | ACCATAAATCCTAAA CCGCG CGT CGCGG CAATCAGCTCCGCCG tauB 489400 - 488633 - | taurine transporter ATP-binding subunit TERM 566 488995 - 488954 - G 84 -10.8 -3.71848 | TTCGTCGAGTAATAA CAGCTGGGGATTCGCCGC CAGCGC GCGGGCAATCCCCACCCG CTGACGTTGACCACC tauA 490375 - 489413 - | taurine transporter substrate binding subunit SDY_0506 490678 - 491307 + | putative response regulator TERM 567 491378 - 491393 + GT 70 -4.6 -4.52857 | AACCGGCTGGCTGAT GCTGTG GACG CTCAGC TTTTATCTGACCAAT TERM 568 491433 - 491445 + GT 81 -9.1 -4.0492 | CAGGCAGTGTTGTTT CTCCC GCA GGGAG TTTATCTCGCCCTTG TERM 569 491753 - 491771 + GT 76 -7.4 -4.22949 | GACCTCATTTACCGG CGGCGT ATTACTG ACGCCG TTTGTCTATCTTATC SDY_0508 493018 - 492398 - | IS2 ORF2 SDY_0507 491307 - 492470 + | putative sensor kinase SDY_0509 493268 - 493023 - | IS2 ORF2 SDY_0510 493591 - 493226 - | insertion sequence 2 OrfA protein TERM 570 493870 - 493901 + r 71 -10.8 -2.59564 | opp_overlap 493869, overlap 493870 GAACCGAAGAAGTAG CCGTTGTGCGGGGA GCAA TCCCCGCATATCCG GTTGTCAGGTCAGAG TERM 571 493870 - 493902 + r 77 -10.6 -3.32963 | gap 1, opp_overlap 493869, overlap 493870 GAACCGAAGAAGTAG CC-GTTGTGCGGGGA GCAA TCCCCGCATATCCGG TTGTCAGGTCAGAGT entD 494620 - 493991 - | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex TERM 572 494334 - 494317 - G 73 -9.1 -3.59979 | TCGGTTGACGGGAAA CCACGGC CAAT GCCGTAG CCCCGCAGTGGCTAA TERM 573 494755 - 494726 - R 93 -14.3 -3.30124 | TTGTAGGCCGGATAA GGCGTTCACGCCG CATC CGGCATGAACGAC GCGCACTTTGTCAAC fepA 497026 - 494786 - | outer membrane receptor FepA TERM 574 497534 - 497544 + G 72 -6.8 -4.15044 | ATGCCAACTGGCGCG GCAG CTA CTGC TTTATTCCCACCGAA TERM 575 497641 - 497623 - g 77 -8.2 -4.08692 | GAAGGCTGGCGAAAA CTATTACC CCA GGCAATAG CCGATCCGCTGAATC fes 497347 - 498471 + | enterobactin/ferric enterobactin esterase ybdZ 498474 - 498692 + | hypothetical protein TERM 576 500107 - 500091 - g 95 -10.1 -4.64144 | overlap 500082 AACAAGCGGCAAAAA CACCGGA TGC TCCGGCG CTGGCAGATGCGCGT TERM 577 500766 - 500785 + G 76 -7.8 -4.2123 | opp_overlap 500754 CGACCACGCACTTTG TGCCGTCG ATGC TGGCGGCA TTTGTTGCATCGCTG TERM 578 500955 - 500967 + G 70 -6.9 -4.07687 | CGGCGGTGGATGTGA GCTGG TAT CCGGC TTTTGGCGAGGAACT TERM 579 501905 - 501915 + G 78 -8.2 -4.18762 | CTGTTTTGTTTCCAC CCGG CAT CCGG TTTTGCCTGGCAGTT entF 498689 - 502570 + | enterobactin synthase subunit F insB 503167 - 502790 - | IS1 ORF2 insA 503487 - 503212 - | IS1 ORF1 fepE 503562 - 504695 + | ferric enterobactin transport protein FepE fepC 505507 - 504692 - | iron-enterobactin transporter ATP-binding protein fepG 506496 - 505504 - | iron-enterobactin transporter permease TERM 580 506288 - 506262 - G 70 -4.2 -4.67353 | overlap 506263 TCAGCGACTGAAAAA TCGCGCCGCTGA CGC CCAGTGCCGCGC CAATCAACAGCGCCA fepD 507497 - 506493 - | iron-enterobactin transporter membrane protein ybdA 507608 - 508858 + | enterobactin exporter EntS fepB 509904 - 508939 - | iron-enterobactin transporter periplasmic binding protein entC 510093 - 511268 + | isochorismate hydroxymutase 2 TERM 581 511955 - 512013 + G 100 -13.9 -3.6761 | opp_overlap 511944 511948 ACAACAGACACGCTA CCTGTGCGCGATCCCGGCG-GCTCATAAC TAC GCCATGAGCTCGCCGGGATCGC-TGGGGG TATTTCTTGCCGGAG TERM 582 512488 - 512503 + G 71 -3.2 -4.87626 | AGCACAATGCCAGTG CCTTTG ATGC CAACGG TTTTTACTGTTCCGG TERM 583 512873 - 512853 - g 70 -3.9 -4.72201 | overlap 512856 GTCGATAAAAAACAA TTACGTCAG TGG CTGGCGTCA CGCGCATCAGCCTGA entE 511278 - 512888 + | enterobactin synthase subunit E entB 512902 - 513759 + | 2,3-dihydro-2,3-dihydroxybenzoate synthetase TERM 584 513815 - 513830 + G 70 -6.1 -4.15044 | TAAAGGTATCGGCTA CGCCA CGGCGC TGGCG TTTGTTAAGGCGGGA entA 513759 - 514505 + | 2,3-dihydroxybenzoate-2,3-dehydrogenase ybdB 514508 - 514921 + | hypothetical protein TERM 585 516244 - 516266 + F 73 -9.8 -3.41366 | overlap 516232 516243 516241 TATGGCGCTGGTTTC CGCCTGTATC ATC GATCCGGGCG TGTATTTTGCCATGA TERM 586 516574 - 516586 + F 71 -6.9 -4.19177 | overlap 516573 GGTGGATGCAGGTAC GCGTG CTG CGCGC TTTATGTTGCAGGAT TERM 587 517325 - 517357 + F 73 -9.8 -3.34715 | gap 1, opp_overlap 517335, overlap 517325 517323 TTGATAGCATTTGTA G-GCCGGATAAGGCG TTCA CGCCGCATCCGGCAC TCTTTCAGCAACATG ybdD 517389 - 517586 + | hypothetical protein ybdH 518684 - 517596 - | hypothetical protein ybdL 519006 - 519953 + | putative aminotransferase TERM 588 519981 - 520015 + T 77 -9.4 -3.90112 | opp_overlap 519981 CCAGGCGCGGGAATA TTGACGGTCGGCAA ACAGCTC TTGCAGACCGTTAA TTTGCTTCAGGCGCA ybdM 520583 - 520080 - | hypothetical protein SDY_0534 521143 - 520556 - | hypothetical protein SDY_0535 521209 - 521511 + | IS600 ORF1 SDY_0536 521652 - 522365 + | IS600 ORF2 ybdN 523043 - 522390 - | hypothetical protein SDY_0538 523815 - 524210 + | iso-IS1 ORF2 TERM 589 525657 - 525635 - g 88 -8.4 -4.67353 | CCAGGCATTCAAAAA CGGCGAATTC ATC GAAATCACCG AAAAAGATACCGAAG ahpC 525582 - 526145 + | alkyl hydroperoxide reductase subunit C TERM 590 526167 - 526186 + F 100 -13.6 -4.63218 | opp_overlap 526167 CAATCGCGTAATTAA TCGGGTGC TGCG GCACCCGA TTTTCTTCCCCGCAC TERM 591 526186 - 526167 - f 90 -13.6 -3.3482 | opp_overlap 526167 CAATCGCGTAATTAA TCGGGTGC TGCG GCACCCGA TTTTCTTCCCCGCAC TERM 592 526199 - 526252 + F 72 -8.9 -3.53012 | gap 1, opp_overlap 526212, overlap 526202 CGATTTTCTTCCCCG CACCATGATGCAAGCTGCATCCA-GG TAG CCGTAGAGGCCGCTTGCATGATGATG TTTAAAGCCCAGGAG TERM 593 526318 - 526301 - g 72 -9.9 -3.41195 | AATATGAAAACTCAA CTCAAGG CTTA CCTTGAG AAATTGACCAAGCCT ahpF 526244 - 527839 + | alkyl hydroperoxide reductase, F52a subunit TERM 594 527870 - 527893 + T 100 -13.1 -5.252 | opp_overlap 527885 ACCTGCAATCGCTTA GCCGCCGGG GTCAAA CCTGGCGGC TTTTTTATGGCAATA TERM 595 527940 - 527913 - T 100 -14.8 -5.08601 | opp_overlap 527926, overlap 527885 TTATGGCAATAAAAA GCCCCGCCGGGA TGGC TCCGGGCAGGGC TGGAGACTTATTCTG ybdQ 528388 - 527960 - | hypothetical protein insA 528601 - 528876 + | IS1 ORF1 insB 528921 - 529298 + | IS1 ORF2 TERM 596 529447 - 529424 - f 89 -4.5 -5.73978 | overlap 529425 ACGACAAAGAAAAAA CCGATCGCT ATAACG AGCGACCGT GGGGGGGCGGTTTTG TERM 597 529446 - 529425 - f 73 -8 -4.01946 | overlap 529424 CGACAAAGAAAAAAC CGATCGCT ATAACG AGCGACCG TGGGGGGGCGGTTTT SDY_0545 529510 - 529782 + | palmitoyl transferase for Lipid A TERM 598 529915 - 529931 + F 71 -7.3 -4.02302 | opp_overlap 529917 GGTGTACTGGTAACC GACACAG CAT TTGTGTC TATTTTTCATGTAAA cspE 529957 - 530166 + | cold shock protein CspE TERM 599 530190 - 530206 + T 100 -9.4 -6.11019 | opp_overlap 530190 AGCAAGAATTCAAAA CCCGCT TAATC AGCGGG TTTTTTTTGGTTTTT TERM 600 530206 - 530190 - T 83 -9.4 -4.36729 | opp_overlap 530190 AGCAAGAATTCAAAA CCCGCT TAATC AGCGGG TTTTTTTTGGTTTTT crcB 530603 - 530220 - | hypothetical protein ybeM 530696 - 531328 + | putative amidase tatE 531613 - 531816 + | twin arginine translocase protein E TERM 601 531813 - 531799 - T 72 -5 -4.59773 | CTTCAGGCTGAAAAA CTCTCT CAT AAAGAG TGACGTGGCGAGCAG TERM 602 531863 - 531880 + T 82 -5.5 -5.24129 | opp_overlap 531864, overlap 531864 GTTCGATACAAAAAA ACCGCTT CAAA AAGCGGG TTTTTTATCAGACAG TERM 603 531879 - 531864 - T 100 -9 -5.71712 | opp_overlap 531864 531863 TTCGATACAAAAAAA CCGCTT CAAA AAGCGG GTTTTTTATCAGACA TERM 604 531864 - 531879 + T 76 -9 -3.73995 | opp_overlap 531864, overlap 531863 TTCGATACAAAAAAA CCGCTT CAAA AAGCGG GTTTTTTATCAGACA lipA 532882 - 531917 - | lipoyl synthase TERM 605 532772 - 532805 + g 74 -6 -4.57073 | gap 1, overlap 532774 TTTCATCCATTCCGG CTTGCGCAGCAGGGC TTCGC GCTCTGTTGC-CACG TTTTTAACCGGGATA ybeF 534026 - 533091 - | putative DNA-binding transcriptional regulator lipB 535080 - 534439 - | lipoyltransferase ybeD 535443 - 535180 - | hypothetical protein TERM 606 535499 - 535472 - R 75 -9.8 -3.56675 | opp_overlap 535476, overlap 535470 535476 TAACGTAATTAAATA GCAACTCCCGCC AGAA GGCGGGAGTTTT TTACTGATGCTTAGT TERM 607 535495 - 535476 - R 100 -15 -3.50456 | opp_overlap 535476, overlap 535472 535470 GTAATTAAATAGCAA CTCCCGCC AGAA GGCGGGAG TTTTTTACTGATGCT TERM 608 535476 - 535495 + r 100 -15 -5.19212 | opp_overlap 535476 535472 535470 GTAATTAAATAGCAA CTCCCGCC AGAA GGCGGGAG TTTTTTACTGATGCT dacA 536764 - 535553 - | D-alanyl-D-alanine carboxypeptidase fraction A TERM 609 536447 - 536432 - G 77 -10.4 -3.64049 | CGAAGAACCTTTAAA CACCGG GTTA CCGGTG GCCCATGCGTCGTTG rlpA 537992 - 536904 - | rare lipoprotein A TERM 610 537584 - 537560 - G 83 -10 -4.06633 | opp_overlap 537559 537557 GAGAAAGCGAAATAA CGCGGTCGTT GCCGT AAGGACCGCG ATCATTAATGCGCAC mrdB 539115 - 538003 - | cell wall shape-determining protein TERM 611 539056 - 539090 + g 100 -6.5 -5.80364 | CAGTAAAATCAGCAG CATTGTGGGATCGAG ATGGA CTTTATCCCAGAATG TTTTTTTATTCGGAT mrdA 541019 - 539118 - | penicillin-binding protein 2 TERM 612 539683 - 539696 + g 74 -2.3 -5.03747 | opp_overlap 539694, overlap 539674 539694 ACCGGAATGGTGTCA CCCTG ATAC CACGG TTTTTTAAAGCGTTT TERM 613 540960 - 540948 - G 77 -6.2 -4.66264 | overlap 540950 CAAAATCCCCAAAAA GGCG ACTAG CGCC CGGCGCACAAACAGC ybeA 541517 - 541050 - | SPOUT methyltransferase superfamily protein ybeB 541730 - 541521 - | hypothetical protein nadD 543382 - 542741 - | nicotinic acid mononucleotide adenylyltransferase TERM 614 543084 - 543074 - G 70 -4.6 -4.48713 | overlap 543076 CTGACCAATAATAAA CGCC AGC GGCA CGTCCGGTCCTTGTT holA 544415 - 543384 - | DNA polymerase III subunit delta TERM 615 544394 - 544352 - G 100 -12 -4.45544 | gap 1, opp_overlap 544356, overlap 544354 544356 CGTTACCAAGTAAAA GATACGCCGCGCGCAGCCC TTCATT GAGCTGCGCGCGGAGT-TG TTCCGGGTACAACCG TERM 616 544393 - 544354 - G 100 -17.1 -3.83437 | opp_overlap 544356, overlap 544352 544356 TTACCAAGTAAAAGA TACGCCGCGCGCAGCCC TTCATT GAGCTGCGCGCGGAGTT GTTCCGGGTACAACC TERM 617 544356 - 544391 + g 100 -17.5 -3.63515 | opp_overlap 544354 544352 544356 ACCAAGTAAAAGATA CGCCGCGCGCAGCCC TTCATT GAGCTGCGCGCGGAG TTGTTCCGGGTACAA TERM 618 544391 - 544356 - G 100 -19.7 -3.49321 | opp_overlap 544356, overlap 544354 544352 ACCAAGTAAAAGATA CGCCGCGCGCAGCCC TTCATT GAGCTGCGCGCGGAG TTGTTCCGGGTACAA rlpB 544996 - 544415 - | LPS-assembly lipoprotein RplB TERM 619 544765 - 544797 + g 70 -4.7 -4.55295 | opp_overlap 544770 CGATGCTCACTTTAC CCAAACGCAGGGATG GAA CGTCCTTACGCGTGG TTTCTTTATCAAGCA TERM 620 544931 - 544912 - G 72 -10 -3.36785 | overlap 544913 TCATAGTGGAAGGAA CCTGCGTG GTAT CACGCAGA TGCCAGCCACACCCG TERM 621 544930 - 544913 - G 73 -11.3 -2.6175 | overlap 544912 CATAGTGGAAGGAAC CTGCGTG GTAT CACGCAG ATGCCAGCCACACCC leuS 547593 - 545011 - | leucyl-tRNA synthetase TERM 622 547248 - 547264 + g 78 -5.1 -4.8048 | opp_overlap 547246 AGTCATAACCAAAGC CCAGC ATTTTGA GCTGG TTTTTCATATACGCG TERM 623 547353 - 547378 + g 74 -6.2 -4.57073 | gap 2, opp_overlap 547352 CAGGCAGACCAAACG CGTCC--CAGCC GATC GGCTGCAGGACG TTTTTGCCCAGCATA SDY_0565 547792 - 548094 + | IS911 ORF1 TERM 624 548200 - 548180 - g 72 -4.6 -4.65838 | CAGATATTGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT TERM 625 548552 - 548541 - g 77 -5.8 -4.63218 | opp_overlap 548546 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SDY_0566 548121 - 548960 + | IS911 ORF2 ybeL 549081 - 549563 + | hypothetical protein ybeQ 550616 - 549633 - | hypothetical protein TERM 626 549716 - 549734 + g 76 -11 -3.30039 | opp_overlap 549705, overlap 549713 GATACAGGTCGAGAG CCTGTCGG AGA TCGACAGG TCTTCCTTCTCCGTA TERM 627 550040 - 550050 + g 70 -6.8 -4.08394 | overlap 550049 AATACCAGAATGCGG CGAG TGT CTCG TTTTGAGCAACGTCT TERM 628 550531 - 550515 - G 73 -3.7 -4.81212 | GCGATTATAATAAAA CCCAACA ATA TATTGAG CCTCACTATCGCCTT insB 551222 - 550845 - | IS1 ORF2 insA 551542 - 551267 - | IS1 ORF1 SDY_0571 551807 - 551571 - | iso-IS1 ORF2 SDY_0572 551986 - 551804 - | iso-IS1 ORF2 TERM 629 552957 - 552942 - R 100 -7.5 -5.64274 | opp_overlap 552942 TCAGGCATAAAAAAA CCCGC TCAATG GCGGG TTCTGGTAAAGTTCA SDY_0577 553612 - 553055 - | putative bacteriophage protein TERM 630 553113 - 553103 - G 72 -5.4 -4.44667 | overlap 553110 TCTGCGAACAACAAA CCAA CCA TTGG CTCTCGCCAGTTCCA TERM 631 553795 - 553782 - R 100 -8.1 -5.2422 | opp_overlap 553782 AACGATATGAAAAAA GACGC GGGC GCGTC TCATATCGCTCCGTA SDY_0578 554439 - 553885 - | hypothetical protein TERM 632 554213 - 554232 + g 82 -2.8 -5.1861 | overlap 554214 AAAAAAGCCTCAAGT TCAGGTTT GTCC AGACCTGC TTTTTTCATCCTCCG SDY_0579 554726 - 554436 - | putative bacteriophage protein SDY_0580 555538 - 554933 - | hypothetical protein SDY_0581 555864 - 555577 - | hypothetical protein SDY_0582 556175 - 555930 - | hypothetical protein SDY_0583 556305 - 556081 - | IS600 ORF2 SDY_0584 556913 - 556386 - | IS600 ORF2 SDY_0585 557251 - 556949 - | IS600 ORF1 SDY_0586 557290 - 557649 + | IS911 ORF1 TERM 633 557755 - 557735 - g 72 -4.6 -4.65838 | CAGATACTGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT TERM 634 558107 - 558096 - g 77 -5.8 -4.63218 | opp_overlap 558101 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SDY_0587 557676 - 558515 + | IS911 ORF2 gltK 559356 - 558682 - | glutamate/aspartate transport system permease TERM 635 559776 - 559759 - H 70 -2 -5.01811 | GGATGAAAGGAAAAA CTGAAT ATTGGG ATCCAG CTCGGCCTTAAACCA SDY_0590 560013 - 560315 + | IS600 ORF1 SDY_0591 560456 - 561268 + | IS600 ORF2 TERM 636 561401 - 561374 - T 100 -16.4 -5.26316 | CTACTCCAGAAAAAA GAGGGTAGCAGC GTTA ACTGCTACCCTC GAAGATTGTTACCCA ybeJ 562432 - 561524 - | glutamate and aspartate transporter subunit TERM 637 561767 - 561778 + g 70 -5.8 -4.29326 | CTTGCCGACGATATC CCAG TTGT CTGG TTTCTTCGCTTTCGC TERM 638 561982 - 562010 + g 81 -7.3 -4.72272 | overlap 561971 CGGCTTTGCCTTTCA GGTCGGCAAAATC TTT GATATCGCCGCCC TTTTTGGTCAACAGG lnt 564367 - 562829 - | apolipoprotein N-acyltransferase TERM 639 564343 - 564317 - G 81 -10.2 -3.97307 | gap 1, opp_overlap 564317 GGCACCGAATAATAA CGCCAGCAGCA GGCGAA TGC-GCTGGCG TTCAATTAATGAGGC TERM 640 564317 - 564343 + g 70 -10.2 -3.20723 | gap 1, opp_overlap 564317 GGCACCGAATAATAA CGCCAGCAGCA GGCGAA TGC-GCTGGCG TTCAATTAATGAGGC ybeX 565270 - 564392 - | putative transport protein TERM 641 565329 - 565306 - R 86 -8.8 -4.43477 | overlap 565308 565325 GTTAGTTAATCAAAA CGCCGTCGTT AATC ACCAACGGCG GGGACGTCTGCCAGT ybeY 565827 - 565360 - | putative metalloprotease ybeZ 566903 - 565824 - | putative ATP-binding protein in pho regulon TERM 642 566503 - 566522 + g 82 -9.2 -4.26292 | overlap 566484 GCCTGGTTTGGCGTG CGCGGCTT AATT ACGCCGCG TTTGGTTTTGATATT TERM 643 567012 - 566987 - R 100 -9.7 -5.51046 | gap 1, overlap 566990 TAAAGAGAGAAAAAA CAAGGCCCACCG GAA CGGCAGGCC-TG AGAATTACGGCTGAT TERM 644 567010 - 566990 - R 100 -12.5 -4.78477 | overlap 566987 AGAGAGAAAAAACAA GGCCCACCG GAA CGGCAGGCC TGAGAATTACGGCTG yleA 568441 - 567017 - | hypothetical protein TERM 645 568092 - 568069 - G 72 -10.2 -3.39505 | gap 1, opp_overlap 568068 568081 AGCTGATATCTACAA CCGGGCTGCGG TCG CCGC-GCACGG AGTTGATCATCTCCG ubiF 568587 - 569762 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 646 569911 - 569884 - T 77 -11.4 -3.28209 | opp_overlap 569890, overlap 569890 ATGAACGCAGAAAAG CAAAAAGCTCGC CGAA GCGAGCTTTTTT AATGTGGCTGGGGTA TERM 647 569905 - 569890 - T 100 -10.4 -5.1417 | opp_overlap 569890, overlap 569884 GCAGAAAAGCAAAAA GCTCGC CGAA GCGAGC TTTTTTAATGTGGCT TERM 648 569890 - 569905 + T 100 -10.4 -5.22312 | opp_overlap 569890 569884 GCAGAAAAGCAAAAA GCTCGC CGAA GCGAGC TTTTTTAATGTGGCT TERM 649 569988 - 569999 + T 73 -4.4 -4.81249 | CCGCTTGGCGATACC CCAA CAAA TTGG TTTTTGAATTTGCCG TERM 650 570845 - 570882 + T 95 -12 -4.36596 | opp_overlap 570846 570847 570852, overlap 570846 570847 570852 ACAAGCACCTCAATA ACTGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTCGCA TTTCTTACTTATACG TERM 651 570880 - 570846 - T 100 -16.6 -3.66732 | gap 1, opp_overlap 570845 570846 570847 570852, overlap 570847 570852 CAAGCACCTCAATAA CTGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTC-G CATTTCTTACTTATA TERM 652 570846 - 570881 + T 100 -15.5 -3.21235 | opp_overlap 570846 570847 570852, overlap 570845 570847 570852 CAAGCACCTCAATAA CTGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTCGC ATTTCTTACTTATAC TERM 653 570880 - 570847 - T 100 -16.8 -2.79557 | opp_overlap 570846 570845 570847 570852, overlap 570846 570852 AAGCACCTCAATAAC TGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTCG CATTTCTTACTTATA TERM 654 570847 - 570880 + T 100 -19 -2.52018 | opp_overlap 570846 570847 570852, overlap 570846 570845 570852 AAGCACCTCAATAAC TGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTCG CATTTCTTACTTATA TERM 655 570875 - 570852 - T 100 -15.3 -3.85389 | opp_overlap 570847 570846 570845 570852, overlap 570846 570847 CCTCAATAACTGAAA CAGCCCCGG ATTTCA CCGGGGCTG TTTCGCATTTCTTAC TERM 656 570852 - 570875 + T 100 -15.3 -3.76534 | opp_overlap 570852 570846 570847, overlap 570847 570846 570845 CCTCAATAACTGAAA CAGCCCCGG ATTTCA CCGGGGCTG TTTCGCATTTCTTAC asnB 572551 - 570887 - | asparagine synthetase B TERM 657 571251 - 571261 + g 71 -3.2 -4.74706 | overlap 571245 GACTCAAAACATTCA CGCA GGA TGTG TTTTTCCATCTTGCC TERM 658 572622 - 572608 - R 95 -7.8 -5.40072 | overlap 572617 572620 GCTTGTTTAAAAAAA TGCCGC AAA GCAGCA CTGTGCGCAAGCGAT TERM 659 572804 - 572779 - R 100 -13.3 -4.42235 | opp_overlap 572779 572783, overlap 572783 AATGGGTAAAAATAA GAAACCACGCC CTGA GGCGTGGTTGC TATTCAGATAACGTC TERM 660 572779 - 572804 + r 82 -13.3 -3.06162 | opp_overlap 572779 572783, overlap 572783 AATGGGTAAAAATAA GAAACCACGCC CTGA GGCGTGGTTGC TATTCAGATAACGTC TERM 661 572800 - 572783 - R 100 -12.7 -4.76802 | opp_overlap 572779 572783, overlap 572779 GGTAAAAATAAGAAA CCACGCC CTGA GGCGTGG TTGCTATTCAGATAA TERM 662 572783 - 572800 + r 85 -12.7 -3.37245 | opp_overlap 572783 572779, overlap 572779 GGTAAAAATAAGAAA CCACGCC CTGA GGCGTGG TTGCTATTCAGATAA nagD 573560 - 572808 - | UMP phosphatase nagC 574828 - 573608 - | transcriptional repressor of N-acetylglucosamine operon nagA 575985 - 574837 - | N-acetylglucosamine-6-phosphate deacetylase TERM 663 575140 - 575130 - G 70 -4 -4.59773 | TTTTACCCGCAAAAA TGAA CTG TTCA ATGTTGGCACCTGCT nagB 576845 - 576045 - | glucosamine-6-phosphate deaminase TERM 664 576459 - 576472 + g 100 -6.7 -5.52023 | AAACAGATGAATTTT TCCGT AAGA ACGGA TTTTTTCTTCATACT TERM 665 577033 - 577055 + H 76 -8.6 -4.09243 | CACAAAAGACACGCG TTTAATTTGC GAT GCGAATTAAA TTTTCACACACTCTG TERM 666 577234 - 577256 + G 85 -13.4 -3.1886 | overlap 577246 TACAGCTCCCCATCG CGGTGCTGCC GGT GGCGGCACTG TTGCTGCGATTCGGT nagE 577179 - 579125 + | N-acetyl glucosamine specific PTS system components IIABC TERM 667 579176 - 579198 + F 100 -12 -6.15828 | opp_overlap 579127 579176 ATCCAACAATGACAA GCGGTGGAGA TCT TCTCTGCCGC TTTTTTTTTCATCAA TERM 668 579226 - 579236 + F 72 -5.4 -4.43272 | opp_overlap 579226 CAATCATCCCCATAA TCTC AGT GAGA TTTTCGATTTTCACT TERM 669 580356 - 580344 - g 86 -9.1 -4.42639 | opp_overlap 580338 580348, overlap 580346 AGATCTCAACGAAAA TGCGC CGC GCGCA ATGGCGGTTATCGAT glnS 579328 - 580992 + | glutaminyl-tRNA synthetase TERM 670 581086 - 581056 - T 100 -15.5 -4.02707 | opp_overlap 581063, overlap 581057 581063 GAAATATGCAAACAA TCCAAAACGCCGC GTTCA GCGGCGTTTTGGT AATGACTCTAACTTA TERM 671 581085 - 581057 - T 100 -19 -3.0054 | opp_overlap 581063, overlap 581056 581063 AAATATGCAAACAAT CCAAAACGCCGC GTTCA GCGGCGTTTTGG TAATGACTCTAACTT TERM 672 581079 - 581063 - T 93 -10.8 -4.39407 | opp_overlap 581063, overlap 581057 581056 GCAAACAATCCAAAA CGCCGC GTTCA GCGGCG TTTTGGTAATGACTC TERM 673 581063 - 581079 + T 90 -10.8 -4.3129 | opp_overlap 581057 581056 581063 GCAAACAATCCAAAA CGCCGC GTTCA GCGGCG TTTTGGTAATGACTC insB 581476 - 581099 - | IS1 ORF2 insA 581826 - 581521 - | IS1 ORF1 SDY_0617 582091 - 582486 + | iso-IS1 ORF2 SDY_0618 582716 - 583078 + | hypothetical protein insA 583129 - 583404 + | IS1 ORF1 SDY_0621 585065 - 584286 - | hypothetical protein TERM 674 584345 - 584325 - Gg 74 -8.3 -3.86897 | opp_overlap 584324 584331 GGTACCTGCGATAAA GTTGACGAT CGC AGCGTCAAC GATCTTTATGACGGC SDY_0620 583992 - 584663 + | hypothetical protein TERM 675 584908 - 584932 + gT 70 -9.2 -3.37283 | overlap 584901 584897 584906 584909 TCTTCTGATGCCCGA CGCGGCAGGT TTTGT GCCTGCCGCA TATTTGAGGAATTTG TERM 676 584909 - 584931 + gT 78 -12.7 -2.61888 | overlap 584901 584897 584908 584906 CTTCTGATGCCCGAC GCGGCAGGT TTTGT GCCTGCCGC ATATTTGAGGAATTT SDY_0622 585327 - 585109 - | hypothetical protein TERM 677 585277 - 585296 + g 80 -5.7 -5.011 | opp_overlap 585274 585277 585279 AGTAATAACAAATAA GTGAGAG CTGTAA CTCTCGC TTTTCTTATTTCCCT TERM 678 585317 - 585346 + g 77 -12.3 -2.72463 | opp_overlap 585323, overlap 585323 TTATTTCCCTTGCAT AAAAAAGCCAACC TGCA GGTTGGCTTTTTC TCATTCAGGCTGGCT TERM 679 585323 - 585340 + g 100 -11.3 -4.98255 | opp_overlap 585323, overlap 585317 CCCTTGCATAAAAAA GCCAACC TGCA GGTTGGC TTTTTCTCATTCAGG TERM 680 585340 - 585323 - G 100 -11.3 -5.24129 | opp_overlap 585323 585317 CCCTTGCATAAAAAA GCCAACC TGCA GGTTGGC TTTTTCTCATTCAGG fur 585807 - 585361 - | ferric uptake regulator TERM 681 586090 - 586063 - R 100 -16.4 -3.19463 | overlap 586065 GGCATTATCTATTAA TACGGCGTAGAC ATGA GTCTACGCCGCA TCACATCAGGCATTG TERM 682 586088 - 586065 - R 100 -16.8 -3.15996 | overlap 586063 CATTATCTATTAATA CGGCGTAGAC ATGA GTCTACGCCG CATCACATCAGGCAT fldA 586626 - 586096 - | flavodoxin FldA ybfE 587128 - 586766 - | LexA regulated protein ybfF 587963 - 587199 - | hypothetical protein TERM 683 588352 - 588370 + G 81 -11 -3.60865 | opp_overlap 588352 588351, overlap 588347 ACGATTAAAGACAAG GTTCGCGC AAT GCGTGAAC TTCTGCTTTCGGATG seqA 588148 - 588693 + | replication initiation regulator SeqA TERM 684 588754 - 588733 - g 78 -10.9 -3.42621 | opp_overlap 588728 AATGGCAATCCACAA TCGTGCAGG CCAA CCTGCACAA CAGAGTGATTTGATT pgm 588719 - 590359 + | phosphoglucomutase TERM 685 590398 - 590379 - T 100 -9.2 -5.39905 | opp_overlap 590379 ATTAAATAAGAAAAA GGGCGGTC GGAA GATCGCCC TTTTTTACTTATGAC TERM 686 590379 - 590398 + T 100 -11.4 -5.32944 | opp_overlap 590379 ATTAAATAAGAAAAA GGGCGGTC GGAA GATCGCCC TTTTTTACTTATGAC kdpE 591200 - 590523 - | DNA-binding transcriptional activator KdpE TERM 687 593411 - 593381 - R 70 -2.5 -5.08824 | gap 1, opp_overlap 593387, overlap 593384 GCGGCATCGAAAAAA GGAT-CGGGCACGG TTTC CCGTACCTGAATTC CGGTGACGCCGCTGA TERM 688 593407 - 593384 - R 70 -8.8 -3.39842 | opp_overlap 593387, overlap 593381 GCATCGAAAAAAGGA TCGGGCACGG TTTC CCGTACCTGA ATTCCGGTGACGCCG TERM 689 593556 - 593535 - R 76 -11.6 -2.66692 | opp_overlap 593535, overlap 593534 TAGGATGACGAGAAC CTGGCGCA TTACTG TGCGCCAG TTCGTCCATTAAGAG TERM 690 593535 - 593556 + r 81 -12.3 -3.21912 | opp_overlap 593535 593534 TAGGATGACGAGAAC CTGGCGCAT TACT GTGCGCCAG TTCGTCCATTAAGAG kdpC 594452 - 593880 - | potassium-transporting ATPase subunit C TERM 691 594759 - 594742 - R 75 -9.9 -3.61517 | opp_overlap 594740 ACGCCGCCGGAATAA TGGCGAA ATAT TTCGCCA CATCGTTGGCAATGC TERM 692 595477 - 595493 + r 73 -2.2 -5.14563 | gap 1, overlap 595478 CAGCGAAGCCAGTTG TGC-GGC GTCA GCCAGCG TTTTTTCATCCACGC TERM 693 595781 - 595765 - R 73 -7.9 -4.11216 | overlap 595766 GCCCCACGCGGAAAA CGGCCAC AGC GTGGCGG TTGCCAGTAAAAAGA kdpF 598272 - 598183 - | KdpF protein TERM 694 598385 - 598374 - H 82 -5.8 -5.14894 | opp_overlap 598374 AAAAAAGTATAAAAA TGGC AAAA GCCA TGATTTAACTAATGT ybfA 598585 - 598791 + | hypothetical protein TERM 695 598839 - 598818 - f 100 -17.3 -4.28375 | opp_overlap 598818 TGAATACATTGAAAA CCGCCAGCG GAAA CGCTGGCGG TTTTTTGTATCAGGA TERM 696 598818 - 598839 + F 100 -17.3 -5.36441 | opp_overlap 598818 TGAATACATTGAAAA CCGCCAGCG GAAA CGCTGGCGG TTTTTTGTATCAGGA TERM 697 599830 - 599848 + G 75 -6.7 -4.30844 | gap 1, opp_overlap 599809, overlap 599833 AGCAGGCCTCTTCCG GCGGGACG GAAC CGTCC-GC TTTTCCTGATACCCT rhsC 599034 - 602297 + | rhsC protein in rhs element SDY_0637 602702 - 602307 - | iso-IS1 ORF2 SDY_0638 602897 - 603133 + | hypothetical protein SDY_0639 603207 - 603710 + | hypothetical protein SDY_0640 604102 - 603707 - | iso-IS1 ORF2 SDY_0641 604297 - 604551 + | hypothetical protein ybgA 604976 - 605485 + | hypothetical protein TERM 698 606456 - 606446 - g 81 -8.2 -4.30014 | opp_overlap 606445 606446 GGCAGGAAGGCAAAA CGGG ATA CCCG ATTGTCGATGCTGCC phrB 605482 - 606900 + | deoxyribodipyrimidine photolyase TERM 699 607038 - 606997 - f 77 -10.2 -3.46936 | gap 1, overlap 606995 AAATTGCAGGAAATA CGTAGGCCTGATAAGACGC GTCAA GCGTCGCATCAGGCAT-CG GTGCTGGCCTATTAA TERM 700 609343 - 609367 + G 70 -3.5 -4.71426 | gap 1, overlap 609342 609346 AAAGTTTTATCGATA GCG-CCGCGC GTTTTG GCGTGGATGC TTTTATTACTGGCGA ybgI 608802 - 609545 + | putative hydrolase-oxidase TERM 701 609800 - 609825 + G 72 -6.7 -4.20918 | opp_overlap 609800 GCTGGTGGGAGGAGA GCGAGGCCCTG GAAC CTGAGTCTCGC TTTATTGAACTTCCG ybgJ 609568 - 610224 + | putative carboxylase ybgK 610218 - 611150 + | putative carboxylase TERM 702 611316 - 611333 + G 78 -8.5 -4.25104 | TGGCGCTCATCCGAG TTTTCCC GACA GGGAAAA TTTTGGTCGCAGCGC ybgL 611140 - 611874 + | hypothetical protein nei 611910 - 612701 + | endonuclease VIII abrB 613759 - 612698 - | putative transport protein TERM 703 613881 - 613860 - R 93 -12.3 -3.75598 | overlap 613852 CAATTAACCGAAGAA GCCCTCTCC GGCT GGAAAGGGC AATAGGCTAAATCAG ybgO 614954 - 613893 - | hypothetical protein TERM 704 613950 - 613984 + g 74 -2.1 -5.15634 | gap 1, overlap 613952 613973 ACCAACGTCGATGGG CGTACCCGGCGTGGAT GACA ATTC-TGCCGTGTAGG TTTTTTCATACACTA ybgP 615646 - 614951 - | putative chaperone TERM 705 615471 - 615489 + g 75 -5.2 -4.59984 | overlap 615476 TGGATAGGCGGCAGG GCGACGAG AAA TTCATCGC TTTTCTCTCCCTTTT TERM 706 615659 - 615677 + H 72 -5.2 -4.63184 | opp_overlap 615642, overlap 615660 CATGACAGATTTCGC TGCCGTGA CTG TCACCGCG TTTTTCAGCTCACTT SDY_0653 615868 - 616263 + | iso-IS1 ORF2 TERM 707 618969 - 618952 - T 95 -12.7 -4.14874 | opp_overlap 618968 ACAATATTCGCAAAA GGCGGCT AATC AGCCGCC TTAAAAAGGATTATT TERM 708 618992 - 618977 - T 78 -6.2 -4.57073 | opp_overlap 618968 CAGCCGCCTTAAAAA GGATTA TTGG TAATCC AGAACGTAAGTTGCG ybgD 619546 - 618980 - | putative fimbrial-like protein insB 619949 - 619572 - | IS1 ORF2 insA 620269 - 619994 - | IS1 ORF1 TERM 709 620681 - 620659 - R 100 -14.8 -5.3321 | AACGAACAAGAAAAA GCCCGCCAGA TAT TCAGGCGGGC TAAACGATATATGGT gltA 621993 - 620710 - | type II citrate synthase TERM 710 622801 - 622812 + G 70 -5.8 -4.1822 | CTCCATCGCGTTTCC GGTG TGAT CACC TTTGTTGCAGTGGGC sdhC 622702 - 623091 + | succinate dehydrogenase cytochrome b556 large membrane subunit sdhD 623085 - 623432 + | succinate dehydrogenase cytochrome b556 small membrane subunit TERM 711 624192 - 624145 - g 70 -11.2 -2.83299 | gap 1, overlap 624138 624144 GCAGGATATGGAAAT GTGGCAATTCCACCCG-ACCGGC ATT GCCGGTGCGGGCGTACTGGTCAC CGAAGGTTGCCGTGG sdhA 623432 - 625198 + | succinate dehydrogenase flavoprotein subunit sdhB 625214 - 625930 + | succinate dehydrogenase iron-sulfur subunit TERM 712 625950 - 625996 + F 70 -10.7 -2.57931 | opp_overlap 625947 625932 625950 625949 625972 625975, overlap 625949 625972 TAGGCCTGATAAGAC GCGCAAGCGTCGCATCAGGCA ACCAG TGCCGGATGCGGCGTGAACGC CTTATCCGGCCTACA TERM 713 626121 - 626064 - g 72 -4.3 -4.67607 | gap 1, opp_overlap 626073 626074, overlap 626065 626073 626074 626112 GGCGTAACAAAGAAA TGCAGGAAATCTTTAAAAACTGCCCCTG ACA CTAAGACAGTTTTTAAAGG-TTCCTTCG CGAGCCACTACGTAG TERM 714 626112 - 626074 - g 71 -11.2 -2.89178 | opp_overlap 626074 626073, overlap 626073 626065 626064 AGAAATGCAGGAAAT CTTTAAAAACTGCCCCTG ACA CTAAGACAGTTTTTAAAG GTTCCTTCGCGAGCC SDY_0663 625989 - 626249 + | hypothetical protein TERM 715 626790 - 626774 - g 83 -5.1 -5.11063 | AGCACCGAAGAAAAA CGCTG GATCCAA CAGCG TATCGAGTCTGGTCG TERM 716 626846 - 626834 - g 100 -7.7 -5.48063 | AGCGAAGAGAAAAAA CGCTT CTT AAGCG AACTGACCGCCGCTG TERM 717 627080 - 627053 - g 71 -2 -5.00616 | gap 1, opp_overlap 627061, overlap 627055 GTGCTGGGTAAAAAA CCGCAAGACTTGT TCG ACGAGT-TTGCCG GTAAGCATAAAGAAC kgd 626231 - 629032 + | alpha-ketoglutarate decarboxylase TERM 718 629594 - 629578 - g 70 -3.6 -4.67353 | GCACGTAGTGAAAAA CGTGTC CCGAT GACTCG CCTGCGTAAGCGTGT sucB 629047 - 630264 + | dihydrolipoamide acetyltransferase TERM 719 630285 - 630319 + F 79 -10.8 -3.55444 | TAAGTTTCACCTGCA CTGTAGACCGACGT GGATAGG GTGTCGGTCTACGG TTTAAAAGATAACGA TERM 720 630783 - 630763 - g 73 -4 -4.81249 | gap 1 GTGGAAATCGAAAAA GTGGCGGAA GAAA CTCCGC-AC CTGATCCACAAAGTT TERM 721 631026 - 631003 - g 77 -10.2 -3.59979 | opp_overlap 631005 TGCCTCGACGGCAAA CTGGGCGCTG ATGG CAACGCCCTG TTCCGCCAGCCTGAT TERM 722 631429 - 631416 - g 76 -9.5 -3.73068 | TCTGGAAGGTAACAA CGCCG AACT CGGCG CGAAGAAACTGGCTG sucC 630358 - 631524 + | succinyl-CoA synthetase subunit beta sucD 631524 - 632393 + | succinyl-CoA synthetase subunit alpha TERM 723 632469 - 632486 + F 100 -11.3 -5.47431 | GGTTTCGACATGGTT GGCCATC GTAT GATGGCC TTTTTTATGTCTTAA TERM 724 632874 - 632904 + F 84 -10.6 -3.93117 | opp_overlap 632877, overlap 632877 TAATGTGATTCCGGA TAATTCGAAAGGCG CTG TGCTTTTCGGATTA TTATTATCTGATTAA TERM 725 632877 - 632901 + F 73 -7.9 -4.07466 | opp_overlap 632877, overlap 632874 TGTGATTCCGGATAA TTCGAAAGGCG CTG TGCTTTTCGGA TTATTATTATCTGAT insA 633099 - 633374 + | IS1 ORF1 insB 633419 - 633796 + | IS1 ORF2 insA 633874 - 634149 + | IS1 ORF1 insB 634194 - 634571 + | IS1 ORF2 SDY_0672 636045 - 634675 - | hypothetical protein SDY_0673 637290 - 636049 - | putative methylaspartate ammonia-lyase TERM 726 637095 - 637108 + g 81 -9.5 -4.09685 | opp_overlap 637087 CAGTACAGTCACCTA CGGCG ACCG CGCCG TTTTCCAGAATCAAC SDY_0674 638654 - 637290 - | putative glutamate mutase subumit E SDY_0675 640061 - 638673 - | putative glutamate mutase L TERM 727 639114 - 639094 - G 71 -2.3 -4.98857 | opp_overlap 639098 AGGTAATGATAAAAA GCGTCCAGC TGT GCGGGTTGC TGAGCAAAATTCACA SDY_0676 640573 - 640061 - | methylaspartate mutase subunit S TERM 728 641182 - 641172 - H 82 -5.4 -5.17054 | ACAATATCGAAAAAA TGAC TGT GTCA GAATTAATTTCAATT SDY_0677 641581 - 641763 + | iso-IS1 ORF2 SDY_0678 641760 - 641975 + | iso-IS1 ORF2 SDY_0679 643280 - 642591 - | hypothetical protein TERM 729 643735 - 643748 + H 74 -3.9 -4.99435 | CATATTTGGTTGGTT TTGAT ATAA ATCAA TTTTTAATTCTTGAA cydA 644083 - 645654 + | cytochrome d terminal oxidase, polypeptide subunit I cydB 645670 - 646809 + | cytochrome d terminal oxidase polypeptide subunit II ybgT 646824 - 646937 + | putative outer membrane lipoprotein TERM 730 646972 - 646999 + G 81 -12.1 -3.21595 | gap 1, opp_overlap 646978, overlap 646978 646991 CTTGTATGCGGTAAT GGACAAGCGCCC CCTGC GGGCGCTT-TCC TTCGTGATGGCGCTT TERM 731 646978 - 646994 + G 86 -10.8 -3.97042 | opp_overlap 646978, overlap 646972 646991 TGCGGTAATGGACAA GCGCCC CCTGC GGGCGC TTTCCTTCGTGATGG TERM 732 646994 - 646978 - g 76 -10.8 -3.41878 | opp_overlap 646972 646978 646991 TGCGGTAATGGACAA GCGCCC CCTGC GGGCGC TTTCCTTCGTGATGG ybgE 646937 - 647230 + | hypothetical protein TERM 733 647251 - 647276 + F 82 -7.6 -4.63184 | opp_overlap 647252, overlap 647252 AATTCTCTTTAAAAA ATTATGGGCC GCGTCA GGCCCATAAA TTTTTACGCTCCCTT TERM 734 647252 - 647275 + F 79 -11.1 -3.37188 | opp_overlap 647252, overlap 647251 ATTCTCTTTAAAAAA TTATGGGCC GCGTCA GGCCCATAA ATTTTTACGCTCCCT TERM 735 647275 - 647252 - f 100 -11.1 -5.00884 | opp_overlap 647251 647252 ATTCTCTTTAAAAAA TTATGGGCC GCGTCA GGCCCATAA ATTTTTACGCTCCCT ybgC 647380 - 647784 + | acyl-CoA thioester hydrolase YbgC tolQ 647781 - 648473 + | colicin uptake protein TolQ tolR 648477 - 648905 + | colicin uptake protein TolR TERM 736 649340 - 649323 - g 74 -3.4 -4.93296 | gap 1, overlap 649326 TCAGGAGCAGAAAAA GCAGGCT GAAGA AGCC-GC AAAACAGGCCGAGTT TERM 737 649544 - 649525 - g 87 -4.8 -5.27923 | overlap 649501 GAAGCGCAGAAAAAA GCCGAGGC AGCC GCTGCGGC ACTGAAGAAGAAAGC TERM 738 649583 - 649558 - g 70 -4.5 -4.46854 | overlap 649573 649574 GCACTGAAGAAGAAA GCGGAAGCGGC AGAA GCAGCTGCAGC TGAAGCAAGAAAGAA TERM 739 649703 - 649681 - g 72 -6.2 -4.32177 | overlap 649663 649662 649682 GCAGCTGATAAGAAA GCGGCAGC AGAGAAA GCTGCAGC CGACAAAAAAGCAGC TERM 740 649733 - 649714 - g 87 -4.9 -5.26316 | overlap 649715 649726 649727 GCAGCCGACAAAAAA GCAGCAG AAAAAG CGGCTGC TGAAAAGGCAGCAGC TERM 741 649748 - 649726 - g 83 -6.2 -4.95806 | overlap 649714 649715 649727 649744 AAAGCAGCAGAAAAA GCGGCTGC TGAAAAG GCAGCAGC TGATAAGAAAGCAGC TERM 742 649781 - 649759 - g 90 -9.8 -4.32177 | overlap 649744 649774 649776 GCAGCTGATAAGAAA GCAGCGGC AGAAAAA GCCGCCGC AGACAAAAAAGCGGC TERM 743 649799 - 649774 - g 85 -6.8 -4.84359 | overlap 649759 649776 649792 GCAGCGGCAGAAAAA GCCGCCGC AGACAAAAAA GCGGCAGC GGCAAAAGCTGCAGC TERM 744 649814 - 649792 - g 95 -6.2 -5.36441 | overlap 649774 649776 649807 GCCGCAGACAAAAAA GCGGCAGC GGCAAAA GCTGCAGC TGAAAAAGCCGCTGC TERM 745 649832 - 649807 - g 83 -10.4 -4.11216 | overlap 649792 649822 GCGGCAGCGGCAAAA GCTGCAGCTG AAAAAG CCGCTGCAGC AAAAGCTGCCGCAGA TERM 746 649850 - 649822 - g 100 -13.1 -4.62069 | opp_overlap 649837, overlap 649807 649837 649838 GCTGCAGCTGAAAAA GCCGCTGCAGCAA AAG CTGCCGCAGAGGC AGATGATATTTTCGG tolA 648970 - 650235 + | cell envelope integrity inner membrane protein TolA tolB 650368 - 651660 + | translocation protein TolB pal 651695 - 652216 + | peptidoglycan-associated outer membrane lipoprotein TERM 747 652280 - 652296 + G 100 -15.1 -4.25104 | TTATTGGTTGGTATA GCGGCCC CTT GGGCCGC TTTTGCTCAGGCACC TERM 748 652478 - 652465 - g 70 -5.3 -4.29738 | TCAGATTCAGGAAAA TCAGT ATCA ACTGA ATCAGGTCGTGGAGC ybgF 652226 - 653017 + | hypothetical protein TERM 749 653060 - 653025 - f 70 -9.1 -3.4285 | opp_overlap 653029, overlap 653027 CGATGTAATGCATAA CACACGACCAGAAGT CGCATT ATTTCTGGTCGTGTC GTGCGAATCATAAGC TERM 750 653058 - 653027 - f 79 -11.7 -3.28368 | opp_overlap 653029, overlap 653025 ATGTAATGCATAACA CACGACCAGAAGT CGCATT ATTTCTGGTCGTG TCGTGCGAATCATAA TERM 751 653029 - 653056 + F 72 -10.7 -2.79302 | opp_overlap 653027 653025 GTAATGCATAACACA CGACCAGAAGT CGCATT ATTTCTGGTCG TGTCGTGCGAATCAT TERM 752 653312 - 653297 - f 72 -9 -3.51597 | overlap 653311 AAGCGTGAAGGATAA CGTTGC GCCA GCAACG GCCCGTAGGGCGAGC TERM 753 653622 - 653590 - f 71 -9.9 -3.19463 | opp_overlap 653591 653599, overlap 653591 653599 TGCACGACCCACCAA TGTAAAAAAGCGCCC TAA AGGCGCTTTTTTGCT ATTCAGGCATCTCTC TERM 754 653621 - 653591 - f 80 -13.4 -2.51464 | opp_overlap 653591 653599, overlap 653590 653599 GCACGACCCACCAAT GTAAAAAAGCGCCC TAA AGGCGCTTTTTTGC TATTCAGGCATCTCT TERM 755 653591 - 653621 + F 88 -14.9 -3.0395 | opp_overlap 653591 653590 653599, overlap 653599 GCACGACCCACCAAT GTAAAAAAGCGCC CTAAA GGCGCTTTTTTGC TATTCAGGCATCTCT TERM 756 653599 - 653613 + F 100 -8.5 -5.27779 | opp_overlap 653591 653590 653599, overlap 653591 CACCAATGTAAAAAA GCGCC CTAAA GGCGC TTTTTTGCTATTCAG TERM 757 653613 - 653599 - f 100 -9.2 -5.17576 | opp_overlap 653599 653591, overlap 653591 653590 CACCAATGTAAAAAA GCGCCC TAA AGGCGC TTTTTTGCTATTCAG nadA 653866 - 654909 + | quinolinate synthetase TERM 758 655655 - 655629 - g 70 -10.1 -3.14051 | overlap 655627 GGATGTGGATCAATA GCGCACGCGAA AGAGG CTCACGCGCGC TGTCCCATTAATGGT pnuC 654947 - 655666 + | required for NMN transport ybgR 656604 - 655663 - | zinc transporter ZitB TERM 759 656309 - 656298 - G 70 -4.4 -4.53034 | overlap 656307 CCCAGACAATCAAAA TGGT AATC ACCA CCAGGGCGATGGCAT TERM 760 656696 - 656677 - R 93 -9.3 -4.78661 | opp_overlap 656677 656676 AGGGAAAAATTAAAA GGGAGAG ACTCCG CTCTCCC ATTATTGGCTATTTT SDY_0697 657098 - 656718 - | putative homeobox protein SDY_0698 657468 - 657184 - | hypothetical protein TERM 761 657277 - 657289 + g 77 -3.3 -5.16071 | AGATCTCGTTTTTCG CGACA ATC TGGCG TTTTTCTTGCTAATT SDY_0699 657663 - 657845 + | iso-IS1 ORF2 SDY_0700 657842 - 658057 + | iso-IS1 ORF2 TERM 762 658489 - 658453 - g 77 -12.3 -2.7497 | overlap 658452 658477 AGATGAGCTGGAAAT CGTAATGCGCGTCTATT TTG AAAAGCCGCGCACCACG GTGGGCTGGAAAGGG aroG 658187 - 659239 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 763 659324 - 659292 - T 79 -12.7 -2.87136 | opp_overlap 659291 659280, overlap 659302 659304 CGATGAATCACCATA GGCCTGATAAGACGC GCA GCGTCGCATCAGGCA ATGTGCTCCATTGTT TERM 764 659314 - 659302 - T 70 -9.1 -3.30771 | opp_overlap 659291 659280, overlap 659292 659304 CCATAGGCCTGATAA GACGC GCA GCGTC GCATCAGGCAATGTG TERM 765 659352 - 659372 + T 79 -8.3 -4.2687 | opp_overlap 659352 GTTAGCAACAAAAAA GCCGACT CACTTGC AGTCGGC TTTCTCATTTTTAAA TERM 766 659372 - 659352 - T 100 -8.3 -5.5112 | opp_overlap 659352 GTTAGCAACAAAAAA GCCGACT CACTTGC AGTCGGC TTTCTCATTTTTAAA gpmA 660150 - 659398 - | phosphoglyceromutase 1 TERM 767 660018 - 660033 + g 74 -6.1 -4.45664 | overlap 660016 AACCTTCCTCTTTCA GCAGC TTACCT GCTGC TTTTGCTTCGCTTAC TERM 768 660350 - 660326 - R 75 -11.5 -2.95751 | overlap 660330 TGAGCAATATAAGGA TAAAGCCCTCA TTA CGAGGGCTTCA GGTGCTACTCAGCAA TERM 769 660346 - 660330 - R 83 -10.1 -4.14004 | overlap 660326 CAATATAAGGATAAA GCCCTCA TTA CGAGGGC TTCAGGTGCTACTCA galM 661395 - 660355 - | aldose 1-epimerase galK 662537 - 661389 - | galactokinase galT 663587 - 662541 - | galactose-1-phosphate uridylyltransferase TERM 770 663374 - 663390 + g 100 -10.1 -4.8667 | opp_overlap 663373 TAGTGAAAACGTAAG CCCCGGT GTA ATCGGGG TTTTTATCGCCTGTC galE 664613 - 663597 - | UDP-galactose-4-epimerase TERM 771 663851 - 663866 + g 77 -6.1 -4.65895 | TGTAGATGTGTACGC CTGGC TTGTTC GCCAG TTTTTCCATCGCCAC TERM 772 664101 - 664118 + g 70 -4.1 -4.60041 | gap 1, overlap 664103 664104 GCGCAGCAGGGCAAT GCTCCAGT CCG GCTGG-GC TTTTTGCAGATCGGT modF 666347 - 664875 - | putative molybdenum transport ATP-binding protein ModF TERM 773 665908 - 665883 - G 86 -11.1 -3.90559 | opp_overlap 665903 ATCAAGAATCAACAA GTCAGGCTCCG ACAT CAGCGCCTGAC ACAGCAGGGTTTTTC modE 667203 - 666415 - | DNA-binding transcriptional regulator ModE TERM 774 666505 - 666521 + g 81 -10.9 -3.57462 | CGCTTCATTTACCGG CACTGTG GCG CACAGTG TTTGCCCGTCCGGTA SDY_0709 667332 - 667481 + | hypothetical protein TERM 775 667491 - 667508 + F 100 -8.4 -5.35224 | CATTGATTCCCTGAA TGCCCG CTTAGT CGGGCA TTTTCTTTTTCTCAA TERM 776 668273 - 668263 - g 72 -6.8 -4.17491 | AGCAAAGGGGTAAAA GTGG TTG CCAC CTTCCCGGAAGATTC modA 667648 - 668421 + | molybdate transporter periplasmic protein TERM 777 668808 - 668826 + G 79 -4.4 -4.97158 | opp_overlap 668805, overlap 668809 GCCGCAAGAACACTG GGTGCCGG GCG CTGGCGCG TTTTCTTTACTATCA modB 668421 - 669110 + | molybdate ABC transporter permease protein modC 669113 - 670171 + | molybdate transporter ATP-binding protein SDY_0714 672439 - 671726 - | IS600 ORF2 SDY_0715 672882 - 672580 - | IS600 ORF1 SDY_0716 673348 - 672953 - | iso-IS1 ORF2 SDY_0717 673543 - 673767 + | hypothetical protein SDY_0718 674467 - 673946 - | IS911 ORF2 TERM 778 674354 - 674365 + gT 77 -5.8 -4.63218 | opp_overlap 674350 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SDY_0719 674786 - 674436 - | IS911 ORF2 TERM 779 674707 - 674727 + gr 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_0720 675115 - 674813 - | IS911 ORF1 SDY_0721 675696 - 675172 - | IS911 ORF2 TERM 780 675283 - 675294 + g 77 -5.8 -4.63218 | opp_overlap 675279 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG TERM 781 675635 - 675655 + g 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_0722 676100 - 675741 - | IS911 ORF1 SDY_0723 676139 - 676441 + | IS600 ORF1 SDY_0724 676582 - 677478 + | IS600 ORF2 TERM 782 679098 - 679070 - gf 78 -6.1 -4.57569 | GCAGGTTTGCAAAAA TGGTACGCA AAAAAGGAAAG TGCGTACCA GCAGAAAGCCTGCCA TERM 783 679195 - 679173 - gf 71 -7.7 -3.84266 | overlap 679174 ACACCGGATACGAAA CCGATACGC GGAAT GCGTACCGA TCCCCCGACTAACCC SDY_0725 678909 - 679673 + | putative bacteriophage protein SDY_0727 681171 - 680338 - | IS600 ORF2 SDY_0726 679597 - 680415 + | putative bacteriophage protein SDY_0728 681614 - 681312 - | IS600 ORF1 SDY_0729 682616 - 681711 - | insertion element IS2 transposase InsD SDY_0730 682939 - 682574 - | insertion sequence 2 OrfA protein SDY_0731 683003 - 683404 + | putative bacteriophage protein TERM 784 683532 - 683512 - gf 86 -3.9 -5.37593 | overlap 683514 683515 GTCGAAAGTAAAAAA GACCTCGCA AAA CGCGAGATA CCGTCACCAAACGTT TERM 785 683530 - 683514 - gf 72 -6.5 -4.31698 | overlap 683512 683515 CGAAAGTAAAAAAGA CCTCGCA AAA CGCGAGA TACCGTCACCAAACG SDY_0732 683332 - 683625 + | hypothetical protein SDY_0733 683625 - 683945 + | hypothetical protein insA 683996 - 684271 + | IS1 ORF1 insB 684316 - 684693 + | IS1 ORF2 TERM 786 684906 - 684859 - T 100 -16.6 -3.30173 | opp_overlap 684861 684864 684865, overlap 684861 684864 AAAAATAGAGCAATA TATAACCGTGATCGATCGGTTA TTAT TAATCGATCGATCACGATTATT ATTTTGAGTGAATAG TERM 787 684904 - 684861 - T 100 -19.2 -3.19202 | opp_overlap 684861 684864 684865, overlap 684859 684864 AAATAGAGCAATATA TAACCGTGATCGATCGGTTA TTAT TAATCGATCGATCACGATTA TTATTTTGAGTGAAT TERM 788 684861 - 684904 + T 100 -19.2 -4.22214 | opp_overlap 684859 684861 684864, overlap 684864 684865 AAATAGAGCAATATA TAACCGTGATCGATCGGTTA TTAT TAATCGATCGATCACGATTA TTATTTTGAGTGAAT TERM 789 684864 - 684901 + T 100 -16.5 -4.22475 | opp_overlap 684864 684861 684859, overlap 684861 684865 TAGAGCAATATATAA CCGTGATCGATCGGTTA TTAT TAATCGATCGATCACGA TTATTATTTTGAGTG TERM 790 684901 - 684864 - T 100 -16.5 -3.71793 | opp_overlap 684861 684864 684865, overlap 684861 684859 TAGAGCAATATATAA CCGTGATCGATCGGTTA TTAT TAATCGATCGATCACGA TTATTATTTTGAGTG TERM 791 684865 - 684900 + T 100 -20 -3.124 | opp_overlap 684864 684861 684859, overlap 684864 684861 AGAGCAATATATAAC CGTGATCGATCGGTTA TTAT TAATCGATCGATCACG ATTATTATTTTGAGT rumB 686081 - 684954 - | 23S rRNA methyluridine methyltransferase ybjO 686610 - 686122 - | hypothetical protein TERM 792 686640 - 686616 - R 95 -12.2 -4.25104 | opp_overlap 686619, overlap 686619 CGTCTTCCATGAAAA CAATGCCGCG ACATG CGCGGCATTA TGTATGCCAGGTTGG TERM 793 686637 - 686619 - R 95 -11.7 -4.25256 | opp_overlap 686619, overlap 686616 CTTCCATGAAAACAA TGCCGCG ACATG CGCGGCA TTATGTATGCCAGGT TERM 794 686619 - 686637 + r 86 -11.7 -3.58905 | opp_overlap 686619 686616 CTTCCATGAAAACAA TGCCGCG ACATG CGCGGCA TTATGTATGCCAGGT TERM 795 686643 - 686659 + r 70 -5.1 -4.43213 | overlap 686645 ATGCGCGGCATTATG TATGCCA GGT TGGCAAA TTTTAGTGTCTTCAG potI 687516 - 686671 - | putrescine ABC transporter membrane protein TERM 796 686975 - 686965 - G 71 -3.2 -4.81083 | CGTAATGACGAAAAA CACT TTC AGCG GCGTCGCACCGAGAT potH 688466 - 687513 - | putrescine ABC transporter membrane protein potG 689609 - 688476 - | putrescine transporter ATP-binding subunit TERM 797 689042 - 689061 + g 73 -3.5 -4.82901 | TATCCACCACTTCAA GCTGCAT CCGGTC ACGCAGC TTTTTATCCAGCGCG potF 690816 - 689704 - | putrescine ABC transporter periplasmic substrate-binding protein TERM 798 689848 - 689858 + g 72 -4.6 -4.68103 | TTCCGCACTCACCAG CGGC GTG GCTG TTTTATTGGCGTTAG TERM 799 690874 - 690892 + r 75 -3.2 -5.24129 | opp_overlap 690874 TGTCACACTGAAAGA TATGCA ATAAACG TGCATA TTTTTTATCGGCGCG TERM 800 691159 - 691116 - R 86 -11.8 -3.65046 | gap 1, opp_overlap 691113, overlap 691117 AAAAAGAGCAGATAA TTTTGCAGCGCGCAGCCACTG CAT CAGCGACTGCGTGCT-CGAAA GGAGTTATCAGTGGA TERM 801 691159 - 691117 - R 77 -12 -2.77401 | opp_overlap 691113, overlap 691116 AAAAGAGCAGATAAT TTTGCAGCGCGCAGCCACTG CAT CAGCGACTGCGTGCTCGAAA GGAGTTATCAGTGGA ybjN 691643 - 691167 - | putative sensory transduction regulator rimK 692633 - 691731 - | ribosomal protein S6 modification protein TERM 802 692171 - 692114 - G 95 -14.2 -3.40522 | gap 1, opp_overlap 692137, overlap 692116 692117 692137 ATTCCTGCACCAGAA TATGCGCGTTCAGACCGCGGAAAGCGT CAATC ACGCTTTCCGCCGCCTGA-CGCGTCTC CGCCAGCACGACGCC TERM 803 692169 - 692116 - G 100 -16.8 -3.27475 | gap 1, opp_overlap 692137, overlap 692114 692117 692137 TCCTGCACCAGAATA TGCGCGTTCAGACCGCGGAAAGCGT CAATC ACGCTTTCCGCCGCCTGA-CGCGTC TCCGCCAGCACGACG TERM 804 692168 - 692117 - G 100 -20.3 -2.56271 | gap 1, opp_overlap 692137, overlap 692116 692114 692137 CCTGCACCAGAATAT GCGCGTTCAGACCGCGGAAAGCGT CAATC ACGCTTTCCGCCGCCTGA-CGCGT CTCCGCCAGCACGAC mdaA 693416 - 692694 - | nitroreductase A ybjC 693687 - 693400 - | hypothetical protein grxA 693847 - 694104 + | glutaredoxin 1 TERM 805 694104 - 694092 - T 71 -3.3 -4.86731 | opp_overlap 694092 CTGGGTGAAAGAAAA TCTGG ACG CCTGA TCGTCTGACAAGCCC TERM 806 694108 - 694140 + T 90 -6.9 -5.40625 | opp_overlap 694116, overlap 694116 CTGGACGCCTGATCG TCTGACAAGCCCTCG CGT TGAGGGCTTTACTGA TTTTTTCTGTGCTGT TERM 807 694116 - 694132 + T 80 -10.1 -3.98747 | opp_overlap 694116, overlap 694108 CTGATCGTCTGACAA GCCCTCG CGT TGAGGGC TTTACTGATTTTTTC ybjM 694511 - 694134 - | hypothetical protein TERM 808 695616 - 695577 - g 72 -7.8 -3.85817 | ATGCCGTGCTACAAA TGGGCGATGAAATAGCGT TGGT AGGCTATCCCGACGCCCA TGCCCGACTCGATCC TERM 809 695869 - 695853 - g 73 -11.5 -2.5955 | overlap 695849 ACGTTTTACAAGTCA GCGGCGA TGC CCGCCGC GTAAAAACCATCGCC TERM 810 695882 - 695896 + G 83 -10 -4.09108 | opp_overlap 695881 695880 695878 CGCGTAAAAACCATC GCCGAT CGC ATCGGC TTTATCTCGATTCAC SDY_0748 694781 - 696466 + | hypothetical protein TERM 811 696520 - 696550 + F 74 -3.3 -4.97158 | gap 1, opp_overlap 696505 CCGCAGAACTTTTCC GCAG-GGCATCAGT CTTA ATTAGTGCCACTGC TTTTCTTTGATGTCC SDY_0749 696799 - 697350 + | hypothetical protein SDY_0750 697946 - 697410 - | putative DEOR-type transcriptional regulator TERM 812 698450 - 698463 + G 71 -3.1 -4.85599 | gap 1 AATAAAACGGTTTTG CCGATG ATG CA-CGG TTTTTATAGCCTGGG SDY_0751 698030 - 699238 + | putative DEOR-type transcriptional regulator SDY_0752 699238 - 699498 + | hypothetical protein insB 699869 - 699492 - | IS1 ORF2 insA 700189 - 699914 - | IS1 ORF1 SDY_0755 701193 - 700282 - | putative transport system permease protein SDY_0756 702116 - 701196 - | putative transport system permease protein TERM 813 701291 - 701279 - G 70 -5.5 -4.42653 | ATTCCAGCGAGAAAA GCAGA ATT TCCGC CTGAATCACCGGGTA TERM 814 701536 - 701522 - G 70 -7.1 -4.08064 | overlap 701532 701533 701535 AATCTTCGCTTAAAA CGTCG ACAAA CGACG CGCGGGTAAAGCGCG SDY_0757 703672 - 702134 - | putative transport protein TERM 815 702204 - 702220 + g 71 -3 -4.82901 | gap 1, overlap 702167 CCGGTCAGGTTTTTA CTGTGTG CCGA CAC-CAG TTTTTCTACCACCAG SDY_0758 705530 - 703692 - | glutathione transporter ATP-binding protein TERM 816 705035 - 705059 + g 77 -11.4 -3.15544 | opp_overlap 705017 705032 CCATCGCAATCATCA CTCGCTGGCG CATCC CGCCAGAGAG TTGATGCGGATAACG ybiK 706515 - 705550 - | L-asparaginase TERM 817 705851 - 705837 - G 70 -5.6 -4.30719 | opp_overlap 705838, overlap 705838 TGCCGGTACAAGAAA CCGCCA CAC TGGCGT TATTGGCGTAGCATC TERM 818 705838 - 705850 + g 73 -9.1 -3.65224 | opp_overlap 705837 705838 GCCGGTACAAGAAAC CGCCA CAC TGGCG TTATTGGCGTAGCAT TERM 819 706810 - 706822 + G 78 -7.7 -4.36063 | CCCAGGAAACGCTGC CACTG GTA CAGTG TTTTGGTCGTATTCT TERM 820 707416 - 707426 + G 72 -6.8 -4.15044 | ACGATCCCCATGCCC TGCG CGC CGCA TTTATTGAAGCCGAC TERM 821 707610 - 707622 + G 78 -10.5 -3.53444 | TGGTTCTGCGGCCTG CCGGG CAA CCCGG TTTCAGCGACGCTGA moeA 706719 - 707954 + | molybdopterin biosynthesis protein MoeA TERM 822 708615 - 708584 - g 79 -10.1 -3.79668 | opp_overlap 708576 ATGGAAGCGATCAAA CTGCTGGCAGGTT ATGGCA AACCGGCCAGCGG GAAAATCGTCATGTA moeB 707954 - 708703 + | molybdopterin biosynthesis protein MoeB mipB 709441 - 708779 - | fructose-6-phosphate aldolase TERM 823 710206 - 710193 - g 79 -3.7 -5.11033 | GATAATCTGAAAAAA CTCGC TGCG GCGGG GAAAAAAATCATCAT ybiY 709545 - 710471 + | putative pyruvate formate-lyase 2 activating enzyme TERM 824 710926 - 710912 - g 71 -2.8 -4.77438 | ACCGATGAGCAAAAA GGTC TGCTGGC GACC GGAATCATTAAAGCG TERM 825 712622 - 712610 - g 71 -9.1 -3.55444 | opp_overlap 712608 GGCTCAGTGGGTAAA CTGCC TAC GGCAG CGATTCTCGGCGGCG ybiW 710477 - 712909 + | putative formate acetyltransferase TERM 826 712956 - 712902 - f 80 -12.8 -3.10344 | opp_overlap 712914 CCCGTACTGAACATA TGTTGTAATCTTCTCAGCCCGGCGGC GTC GCCGCCGGGCTAAATCATTCACATCA TCAATTTCATCCTTA TERM 827 712914 - 712944 + F 95 -16.8 -2.74012 | opp_overlap 712902 ATATGTTGTAATCTT CTCAGCCCGGCGGC GTC GCCGCCGGGCTAAA TCATTCACATCATCA SDY_0765 713055 - 713711 + | hypothetical protein SDY_0766 714103 - 713708 - | iso-IS1 ORF2 SDY_0767 715228 - 714683 - | putative regulatory protein TERM 828 714709 - 714729 + g 70 -6.2 -4.16284 | TCGATTTTACACTAC TTGAGAGT TTGCT GCTCTCAA TTTCTTCCAAAATCT SDY_0768 715646 - 716053 + | hypothetical protein SDY_0769 716763 - 716050 - | IS600 ORF2 SDY_0770 717206 - 716904 - | IS600 ORF1 SDY_0771 717245 - 717574 + | hypothetical protein TERM 829 717612 - 717589 - g 85 -10.3 -4.25848 | gap 1, overlap 717603 AAGGTGTGATTAAAA CGCCCA-CGG GAGAA CCGCTGGGCG GCGCAACCATTACAC TERM 830 717633 - 717654 + G 100 -14.5 -3.2964 | opp_overlap 717627 ACCATTACACTGACC TCCCTGCAC AACC GTGCAGGGA TTCTGAAAGGCGTTT TERM 831 717716 - 717687 - g 73 -11.5 -2.79915 | gap 1, opp_overlap 717692, overlap 717689 717691 AGCCACGTCACCACA CAGAGCGGGG-AGT ATG ACTTCCCCGTTCTG CCGGGCGTGTACAGC TERM 832 717794 - 717814 + G 74 -10.5 -3.1733 | opp_overlap 717794 717792, overlap 717792 717791 TCGCGTTTATGAAGA TTCAGCGGA CGG TTCGCTGAA TGATTTTCTGGGCGC SDY_0772 717561 - 718613 + | putative phage tail fiber protein TERM 833 718929 - 718943 + G 79 -4.2 -5.06816 | ATGCTCATGTCTCTG GCGCAA TGC TTGGGC TTTTTATTCGCACAT SDY_0773 718914 - 719540 + | hypothetical protein TERM 834 719561 - 719592 + F 72 -8.1 -3.66378 | overlap 719562 CAGTTTGTATAGTTT ATGACGATCGATA GCATCA TATCGATCGTCGG TTTGCATCAAGTGTG TERM 835 719562 - 719591 + F 77 -11.6 -2.79505 | overlap 719561 AGTTTGTATAGTTTA TGACGATCGATA GCATCA TATCGATCGTCG GTTTGCATCAAGTGT TERM 836 720254 - 720264 + G 70 -4 -4.63218 | GTTGTGTATCAGGCG TCAA ATT TTGA TTTTATTGGCAGCCA SDY_0774 719801 - 720517 + | putative DNA modification protein TERM 837 720744 - 720765 + F 90 -14.5 -3.15182 | overlap 720742 GTTGATCTTCCCCCT GGCCGAAGT GACC ACTTCGGCC TCTCTCCTTTTTGCT TERM 838 721521 - 721536 + G 72 -4.6 -4.61633 | overlap 721500 721523 GAACGGTGGTTATTA CCCGCT TATC AGCGCG TTTTTGCCAATGTGT TERM 839 722041 - 722031 - g 88 -8.2 -4.62069 | GCCGCACTGGAAAAA GGCG CAT CGCC GGGCGACTTCCCGCG ybiU 720885 - 722144 + | hypothetical protein TERM 840 722300 - 722324 + T 72 -8.5 -3.79633 | overlap 722297 ACAGGTACTGCGTAG GCCTGATAAGC GTA GCGCATCAGGC TATTTTGCATTTGTC ybiT 723977 - 722385 - | putative ATP-binding component of a transport system TERM 841 723185 - 723200 + g 70 -4.6 -4.4634 | opp_overlap 723178, overlap 723182 TAACGAAAGATTGCA GCTCAG CAAT CTGCGC TTTCTTCTTGGCGTT ybiS 724196 - 725116 + | hypothetical protein TERM 842 725155 - 725137 - T 100 -11 -4.75954 | opp_overlap 725137 AAAACGTAAAACAAA GGCGGACT CAT AATCCGCC TTTTTTATTTGCCAG TERM 843 725137 - 725155 + T 100 -8.8 -5.63517 | opp_overlap 725137 AAAACGTAAAACAAA GGCGGACT CAT AATCCGCC TTTTTTATTTGCCAG ybiR 726139 - 725174 - | hypothetical protein SDY_0779 726757 - 726290 - | manganese transport regulator MntR TERM 844 727092 - 727069 - H 74 -8.1 -3.8709 | opp_overlap 727071, overlap 727071 AAACCTTCCGATAAA TAGCGGCGT CGCGGT ACGCCGCTT CCCTCCTGCTTTCAT TERM 845 727071 - 727090 + H 74 -10.7 -3.12402 | opp_overlap 727071 727069 ACCTTCCGATAAATA GCGGCGT CGCGGT ACGCCGC TTCCCTCCTGCTTTC TERM 846 727090 - 727071 - H 79 -10.7 -3.52113 | opp_overlap 727071, overlap 727069 ACCTTCCGATAAATA GCGGCGT CGCGGT ACGCCGC TTCCCTCCTGCTTTC TERM 847 727372 - 727387 + G 71 -9 -3.55563 | CAAAGAATCGCTTGT TACCCG TAGC CGGGTA TTTAGCCCGTGGACT TERM 848 728527 - 728502 - g 70 -4.7 -4.50159 | TGCAATCGAAAGAAA CGTCGTGCTAT CTCT ATACCATGACG CAAACGGACGATTTA ybiP 727343 - 728926 + | putative enzyme TERM 849 728959 - 728930 - T 93 -10.1 -4.62471 | opp_overlap 728936, overlap 728936 CCGAAGCCTTAAAAA CAAAAATCCGCCC CGAG AGGCGGATTTTTT ATATCACCAAAGTGA TERM 850 728953 - 728936 - T 100 -9.1 -5.61881 | opp_overlap 728936, overlap 728930 CCTTAAAAACAAAAA TCCGCCC CGAG AGGCGGA TTTTTTATATCACCA TERM 851 728936 - 728953 + T 100 -8.4 -5.36441 | opp_overlap 728930 728936 CCTTAAAAACAAAAA TCCGCC CCGAGA GGCGGA TTTTTTATATCACCA ompX 729490 - 728975 - | outer membrane protein X TERM 852 729651 - 729667 + H 79 -9.5 -3.72315 | opp_overlap 729651 729650, overlap 729650 ACTTTTTCAGAGAAC TGCGTAA GTA TTACGCA TGTTTTCCCTGTCAT TERM 853 730294 - 730316 + H 76 -9 -3.69373 | opp_overlap 730286 GATTTAACCGGCTGT GCGCTGGCTC TGG GGGCCGGGGC TTGTTGGGCTATTTA TERM 854 730772 - 730737 - H 71 -10.6 -2.71693 | opp_overlap 730740, overlap 730734 CATTAATTAAATTTA CATTTCTGCATGGTTA TGCA TAACCATGCAGAATTT CTCGCTACTTTTCCT TERM 855 730740 - 730769 + H 100 -16.7 -3.96827 | opp_overlap 730737 730734 TAATTAAATTTACAT TTCTGCATGGTTA TGCA TAACCATGCAGAA TTTCTCGCTACTTTT TERM 856 730872 - 730858 - H 72 -5.8 -4.50627 | TAGCGAGCAAATAAA TAAGAA TTG TTCTTA TCAATATATCTAACT TERM 857 731126 - 731111 - g 87 -4.7 -5.29782 | GACAGCGAGAAAAAA GCAAC AGTAGA GTTGC TGAATCGCCAGGTTA dps 731030 - 731533 + | DNA starvation/stationary phase protection protein Dps TERM 858 731596 - 731574 - T 73 -7.6 -4.17657 | opp_overlap 731575, overlap 731575 TAGTACACGGTAAAA GCGGCTTCCT GAC AGGAGGCCGT TTTGTTTTGCAGCCC TERM 859 731595 - 731575 - T 75 -11.1 -3.10112 | opp_overlap 731575, overlap 731574 AGTACACGGTAAAAG CGGCTTCCT GAC AGGAGGCCG TTTTGTTTTGCAGCC TERM 860 731575 - 731595 + T 100 -13.3 -5.07652 | opp_overlap 731574 731575 AGTACACGGTAAAAG CGGCTTCCT GAC AGGAGGCCG TTTTGTTTTGCAGCC insA 732209 - 731934 - | IS1 ORF1 TERM 861 732336 - 732355 + H 77 -3.6 -5.16237 | ATCCACATCATCACT CAATCGTT ACAT AAAGATTG TTTTTTCATCAGGTT TERM 862 732397 - 732439 + H 80 -12.8 -3.06315 | opp_overlap 732385 732404, overlap 732388 AATCACTGTGTTGAG TGCACAATTTTAGCGCACCA GTT TGGTGCCCCAGAATGGTGCA TCTTCAGGGTATTGC TERM 863 732464 - 732474 + H 80 -6.8 -4.59109 | opp_overlap 732464 732463 TATTGCCCTATAAAT CGTG CAT CACG TTTTTGCCGCATCTC glnH 732583 - 733329 + | glutamine ABC transporter periplasmic protein glnP 733468 - 734127 + | glutamine ABC transporter permease protein glnQ 734124 - 734846 + | glutamine ABC transporter ATP-binding protein TERM 864 735114 - 735101 - T 100 -4.5 -6.11243 | gap 1, overlap 735102 ATCGAACAAAAAAAA GCGGCC TAT GGC-GC ACTGGCGGATGTGCT TERM 865 735613 - 735588 - T 77 -11.1 -3.18264 | overlap 735595 TCGGCTAGGTATTAA GCGACAACCTG AATG CAGGCAGTCGC ACCATCGCTTTCCAA SDY_0789 736727 - 736332 - | iso-IS1 ORF2 ybiN 738966 - 737959 - | putative SAM-dependent methyltransferase TERM 866 739179 - 739169 - g 71 -3.2 -4.78107 | TATCATTATGAAAAA GTGC CTC ACAC TACTGATTGCCACCG TERM 867 739353 - 739335 - g 71 -3 -4.86033 | overlap 739336 AAACTGGCAGAAAAA GCGCGC GAGCAAG GCGCGA AAGGTTATGTCATTA ybiM 739017 - 739421 + | hypothetical protein TERM 868 739436 - 739457 + F 74 -7.3 -4.23434 | opp_overlap 739436 ACCCCACCAACGTAA CTGCATTCG CCTC TGGATGCAG TTTTCGCCTGTTTTG TERM 869 739591 - 739546 - f 75 -6.4 -4.52857 | gap 1, overlap 739547 739548 ATGGGTGATAGAAAA TTGCGCCAAGTGATAATGCTT ATCAA AATCATTATCACTTG-CACGA ACACTATCACGAGAT SDY_0792 739686 - 740018 + | hypothetical protein TERM 870 740042 - 740067 + F 100 -9.8 -5.61596 | opp_overlap 740042 GTGGTTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 871 740067 - 740042 - f 72 -9.1 -3.61398 | opp_overlap 740042 GTGGTTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SDY_0793 740057 - 741403 + | IS4 orf TERM 872 741414 - 741385 - f 89 -9.3 -4.59109 | overlap 741387 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACCCCGGCGTGGGT TERM 873 741412 - 741387 - f 100 -16.3 -3.90762 | overlap 741385 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACCCCGGCGTGG TERM 874 741465 - 741475 + F 71 -6.8 -4.0371 | CGGTAACTCCACCAC TGGC AAC GCCA TTTATATGCGCGGTG TERM 875 741797 - 741782 - g 71 -2.4 -5.02074 | TGATGGGCGAAAAAA CGCACG ATGC CGGACG CGACAAAGTCAAAAA TERM 876 742573 - 742554 - g 73 -11.4 -2.65007 | overlap 742551 TACTGAATATAACAG TGCCACCG CCTG CGGCGGCA GCGGACGCGGTGCCA TERM 877 742839 - 742819 - g 70 -3.9 -4.70879 | TTTAAACCGCAAAAA GCCAACACC AGC GAGATTGGC ACCAAATGGCAGGTT SDY_0794 741577 - 743406 + | catecholate siderophore receptor Fiu TERM 878 743414 - 743431 + F 100 -12.7 -4.58283 | ATTTCTGATTCAGAT GTGGGGC GCAA GCCCCAC TTTTTGGAGAACTTG TERM 879 744045 - 744029 - g 73 -3.7 -4.87786 | overlap 744031 TGAACTGGACAAAAA TATTCAG TCG CTGAAAA GCCGCTATGGTGAAA ybiX 743448 - 744125 + | putative hydroxylase ybiI 744199 - 744465 + | hypothetical protein TERM 880 744680 - 744665 - f 83 -4 -5.40072 | overlap 744666 TCTCTCGTAAAAAAA CGTGAT ACTC ATCACA TCGACGAAACAACGT TERM 881 744858 - 744840 - g 71 -3.1 -4.79657 | opp_overlap 744843, overlap 744842 AGAACATGAATAAAA TCGGC GTGGTTTCT GCCGA TGGCGCATCCACCCT ybiJ 744731 - 744991 + | hypothetical protein TERM 882 745056 - 745008 - T 82 -11.6 -3.37796 | opp_overlap 745008 745009 745045, overlap 745009 745035 TCGTAGGACGGATAA GGCGTTTACGCCGCATCCGGCA ACAGA TGCCTGATGCGACGCTACCGCG TCTTATCAGGCCTAC TERM 883 745055 - 745009 - T 90 -15.1 -2.62463 | opp_overlap 745008 745009 745045, overlap 745008 745035 CGTAGGACGGATAAG GCGTTTACGCCGCATCCGGCA ACAGA TGCCTGATGCGACGCTACCGC GTCTTATCAGGCCTA TERM 884 745009 - 745055 + T 70 -10.7 -2.5294 | opp_overlap 745009 745008 745035, overlap 745008 745045 CGTAGGACGGATAAG GCGTTTACGCCGCATCCGGCA ACAGA TGCCTGATGCGACGCTACCGC GTCTTATCAGGCCTA TERM 885 745068 - 745035 - T 70 -9.5 -3.07344 | opp_overlap 745009 745008 745045, overlap 745009 745008 GCATCCGGCAACAGA TGCCTGATGCGACGC TACC GCGTCTTATCAGGCC TACAAAATCCGAACC TERM 886 745192 - 745213 + T 100 -13.7 -5.47821 | ATGTTACCCTTGTTT GCCCGTCCG TTAC TGGACGGGC TTTTTTTAGCTGGCT ybiC 746304 - 745219 - | hypothetical protein TERM 887 746433 - 746410 - R 95 -12.5 -4.07568 | TGCGGTGGGGTAAAA GCCGGATGA CATGGC TCATCCGGC TGAGATAAAAATTAG ybiB 747407 - 746445 - | hypothetical protein TERM 888 747379 - 747352 - G 71 -9.1 -3.53444 | gap 1, opp_overlap 747329 747352 747350 747348 GTATCCCGGTCTAAA TCGCGCGCGTGG TTTTT CC-CGCGCCCGA TCTCTTTAATGATTT TERM 889 747452 - 747439 - R 71 -9.5 -3.25223 | opp_overlap 747435 GACTCACATCATTAA CGCCG CCGA CGGCG TGGGGATTTCGTTTT dinG 749585 - 747435 - | ATP-dependent DNA helicase DinG TERM 890 748028 - 748040 + g 72 -7.7 -3.86312 | AAAAGGCCGCCATTT CAGCA ATA TGCTG TTCTTCGTTGTCGAT TERM 891 749330 - 749353 + g 100 -8.8 -5.27779 | GATCCTGCAATGCCA CGTTGGCGGT GCTC ACCACCAGCG TTTTTTGCTCTTCGC SDY_0801 750377 - 749982 - | iso-IS1 ORF2 SDY_0802 750572 - 750787 + | hypothetical protein SDY_0804 751406 - 751077 - | hypothetical protein SDY_0803 750928 - 751266 + | hypothetical protein SDY_0805 751601 - 751996 + | iso-IS1 ORF2 TERM 892 752158 - 752136 - T 100 -10.7 -5.10656 | ATTAAAACAATAAAA TCAGACATG TCATG CATGTCTGA CCGTGTTACCTGAAT rhlE 753580 - 752216 - | ATP-dependent RNA helicase RhlE TERM 893 752262 - 752299 + g 85 -6.9 -4.86033 | gap 1, overlap 752244 752243 752263 CGGCGACGTTGTTGT TCGCCT-GCCGGTTTGGC ATC GCCGAGGCGGCGAGACGG TTTTTCTGCAGGTTT TERM 894 753796 - 753773 - H 73 -9.8 -3.37354 | CATATGGAGTCATAA TCTTAATCAA TCAT TTGATTAAGA ATGGACTGTGCGATG TERM 895 753866 - 753854 - g 81 -4.8 -5.09173 | opp_overlap 753862 753864 GAACAGGCGAAAAAA CAGC TGATT GCTG CCGCACTGGCGCAGT ybiH 753797 - 754480 + | putative DNA-binding transcriptional regulator SDY_0808 754480 - 755478 + | hypothetical protein TERM 896 755713 - 755692 - g 93 -8.7 -4.7373 | gap 1, opp_overlap 755708, overlap 755693 755695 TGATCCGATCAAAAA CGACGGCGCG CTG CACGCCGT-G CTCGGCTATATGCCG TERM 897 755711 - 755695 - g 80 -11.5 -3.28472 | opp_overlap 755708, overlap 755692 755693 TCCGATCAAAAACGA CGGCGCG CTG CACGCCG TGCTCGGCTATATGC TERM 898 756351 - 756367 + G 70 -5.1 -4.41302 | TCAACGAAACTACGC CGCGTTT TGA AGATGCG TTTATTGATTTACTG ybhF 755456 - 757207 + | putative ATP-binding component of a transport system ybhS 757200 - 758333 + | hypothetical protein TERM 899 758518 - 758484 - g 70 -10 -3.21912 | GCTGGAAGTGACCAA CGCCACCATCGCCATC TAC GATGAAGATAACGGCG AGCATTCGGTGGAGC ybhR 758344 - 759450 + | hypothetical protein ybhQ 759822 - 759412 - | hypothetical protein TERM 900 759517 - 759475 - G 71 -9 -3.44848 | overlap 759473 759477 759480 TTTCGCCAGCAAAGA CACTACCGCCGGGCCGGCAA GGA TTGCCAGCCCTGCAATTGCC AGCAAAAAGTTGTTT TERM 901 759515 - 759477 - G 95 -13.8 -3.29704 | overlap 759473 759475 759480 TCGCCAGCAAAGACA CTACCGCCGGGCCGGCAA GGA TTGCCAGCCCTGCAATTG CCAGCAAAAAGTTGT TERM 902 759512 - 759480 - G 85 -14.1 -2.82279 | overlap 759477 759473 759475 CCAGCAAAGACACTA CCGCCGGGCCGGCAA GGA TTGCCAGCCCTGCAA TTGCCAGCAAAAAGT TERM 903 760663 - 760626 - g 77 -6.2 -4.62783 | gap 1, overlap 760627 760628 GATCTACGTCAAAAA TGC-CAGCGCCAGCGCG CCAAC CGCGTTGCCGCTGCGGA CATGGCGACACCTTT ybhP 759955 - 760716 + | hypothetical protein ybhO 760713 - 761945 + | cardiolipin synthase 2 TERM 904 762196 - 762182 - g 90 -11.4 -3.86015 | opp_overlap 762191 762193 TACTGCGGTCACAAA CTGGCG AAG CGCCAG ATGATGCTGGTGTCG ybhN 761945 - 762685 + | hypothetical protein SDY_0816 762995 - 762669 - | iso-IS1 ORF1 ybhL 763602 - 763048 - | hypothetical protein SDY_0818 764109 - 763714 - | iso-IS1 ORF2 SDY_0819 764468 - 764833 + | insertion sequence 2 OrfA protein SDY_0820 764791 - 765696 + | insertion element IS2 transposase InsD MoaE 766454 - 766002 - | molybdopterin synthase large subunit moaD 766701 - 766456 - | molybdopterin synthase small subunit moaC 767179 - 766694 - | molybdenum cofactor biosynthesis protein C moaB 767694 - 767182 - | molybdopterin biosynthesis, protein B moaA 768705 - 767716 - | molybdenum cofactor biosynthesis protein A ybhK 769102 - 770010 + | putative structural protein TERM 905 770110 - 770053 - T 74 -7 -4.21607 | gap 2, opp_overlap 770055 770077, overlap 770054 CCTATTGAAGACAAA GTGCGCGTTGTTTATGCCGGATGCGGCG TGAA CGCCTTATCCGGCCTACA-AAC-CGCGC TAATTCAATGTATTG TERM 906 770111 - 770054 - T 77 -11.1 -3.12482 | opp_overlap 770055 770077, overlap 770053 CTATTGAAGACAAAG TGCGCGTTGTTTATGCCGGATGCGGCG TGAA CGCCTTATCCGGCCTACAAACCGCGCT AATTCAATGTATTGC TERM 907 770055 - 770110 + T 100 -16.8 -2.78868 | opp_overlap 770053 770054, overlap 770077 TATTGAAGACAAAGT GCGCGTTGTTTATGCCGGATGCGGCG TGAA CGCCTTATCCGGCCTACAAACCGCGC TAATTCAATGTATTG uvrB 772222 - 770201 - | excinuclease ABC subunit B TERM 908 771371 - 771385 + g 75 -5.7 -4.67697 | overlap 771358 771380 ACGCTGGGTCAGCCG CTGCT CTTCC AGCAG TTTGTTGTTTTCCAA TERM 909 772005 - 772020 + g 72 -4.6 -4.63218 | opp_overlap 772006, overlap 772006 TTCATTTCGCCATAC AGCTGG GCCG CCAGCG TTTTGTTGGGCGCAA bioD 773478 - 772801 - | dithiobiotin synthetase bioC 774226 - 773471 - | biotin biosynthesis protein BioC bioF 775367 - 774213 - | 8-amino-7-oxononanoate synthase TERM 910 775324 - 775344 + g 76 -9.6 -3.77302 | overlap 775321 AGGGCATCGGCAGCA CGCCGCGC ATCGA GCGCCGCG TTGATTTTCTCCTGC bioB 776404 - 775364 - | biotin synthesis TERM 911 776242 - 776256 + g 72 -7.1 -4.25104 | AGTATTTGCAATCTT CCGGA CAAGC TCCGG TTTTAATCGACAGCA TERM 912 777466 - 777454 - g 76 -9.1 -3.78775 | opp_overlap 777454 777453 CTGCGCAGCAGCAAA CGCCA GCC TGGCG ATTCTCGAATCTGGC bioA 776492 - 777781 + | adenosylmethionine--8-amino-7-oxononanoate transaminase ybhB 777840 - 778316 + | putative kinase inhibitor protein TERM 913 778323 - 778349 + F 83 -13.8 -2.53759 | opp_overlap 778320, overlap 778328 778330 TTTAGTTAATCACTC TGCCAGATGGCG CAA TGCCATCTGGTA TCACTTAAAGGTATT TERM 914 778568 - 778602 + F 100 -10.1 -5.24129 | opp_overlap 778568 ACCTGATACAGAGCA TTAGCGCAAGGTGAT TTTTT GTCCTCTTGCGCTAA TTTTTTGTCAACGCA ipaH_1 778896 - 780659 + | invasion plasmid antigen TERM 915 780724 - 780701 - f 100 -13.8 -4.58395 | opp_overlap 780713 780714, overlap 780702 CTGACTCCGGAAAAA CGGAGGCCCG CCCC CGGGCCTCCC CGGATTCATCCGTTT TERM 916 780723 - 780702 - f 100 -17.3 -3.34716 | opp_overlap 780713 780714, overlap 780701 TGACTCCGGAAAAAC GGAGGCCCG CCCC CGGGCCTCC CCGGATTCATCCGTT SDY_0835 780984 - 781286 + | IS600 ORF1 SDY_0836 781427 - 782140 + | IS600 ORF2 SDY_0837 782152 - 782379 + | hypothetical protein yliJ 783008 - 782376 - | putative transferase SDY_0839 783633 - 783238 - | iso-IS1 ORF2 TERM 917 784056 - 784071 + G 87 -4.7 -5.30199 | TCTCCTTCGTGGTCT TGCAG CGGGTT CTGCA TTTTTATTCCTTTTT SDY_0840 783828 - 784121 + | hypothetical protein dacC 784024 - 785226 + | D-alanyl-D-alanine carboxypeptidase fraction C TERM 918 785235 - 785265 + T 93 -16.3 -2.85896 | opp_overlap 785238, overlap 785238 CTCTTAATCTTCTGA TAACCGGATGGCG CGAAA CGTCATCCGGTTA TACTTCATTAATACA TERM 919 785238 - 785262 + T 93 -13.6 -3.57128 | opp_overlap 785238, overlap 785235 TTAATCTTCTGATAA CCGGATGGCG CGAAA CGTCATCCGG TTATACTTCATTAAT TERM 920 785262 - 785238 - T 82 -12.1 -3.30159 | opp_overlap 785238 785235 TTAATCTTCTGATAA CCGGATGGCGC GAA ACGTCATCCGG TTATACTTCATTAAT deoR 786031 - 785273 - | DNA-binding transcriptional repressor DeoR TERM 921 785783 - 785794 + g 79 -3.6 -5.06414 | overlap 785785 CGTCGCAGCCAGTTT TGCC GCCC GGCG TTTTTCTTCCACCAG ybjG 786685 - 786089 - | undecaprenyl pyrophosphate phosphatase TERM 922 786467 - 786457 - G 72 -5.4 -4.56597 | overlap 786459 GGTCGTGCGGAAAAA GATG TCC CATC GTCCAGGACACAAAC TERM 923 786574 - 786553 - G 72 -7.9 -3.9941 | GCCCCCACAACCAAA GTACCGCGG CCAG CAGCGGCAC CACGGTAATCAAATC SDY_0845 788515 - 788817 + | IS911 ORF1 TERM 924 788923 - 788903 - g 72 -4.6 -4.65838 | CAGATACTGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT TERM 925 789275 - 789264 - g 77 -5.8 -4.63218 | opp_overlap 789269 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SDY_0846 788862 - 789683 + | IS911 ORF2 SDY_0847 790070 - 790783 + | IS600 ORF2 SDY_0848 790780 - 791334 + | hypothetical protein TERM 926 791449 - 791472 + F 93 -10.2 -4.58395 | opp_overlap 791446 791445, overlap 791451 AAACGGATGAATCCG GGGAGGCCCG GGGG CGGGCCTCTG TTTTTCCGGAGTCAG TERM 927 791451 - 791470 + F 100 -15 -3.90762 | opp_overlap 791446 791445, overlap 791449 ACGGATGAATCCGGG GAGGCCCG GGGG CGGGCCTC TGTTTTTCCGGAGTC SDY_0849 792549 - 792851 + | IS600 ORF1 SDY_0850 792992 - 793795 + | IS600 ORF2 TERM 928 794877 - 794843 - f 100 -10.1 -5.24129 | opp_overlap 794843 TGCGTTGATAAAAAA TTAGCGCAAGAGGAC AAAAA ATCACCTTGCGCTAA TGCTCTGTTACAGGT TERM 929 795694 - 795678 - g 70 -6.5 -4.15106 | CAGCAAGGGGTAAAA CTGGAAG GCG CATCCAG CAATTTCATCTCGCC TERM 930 796016 - 796029 + G 71 -2.3 -4.96848 | overlap 796017 CATTCTGGGTAAGGA TGCTG AAGG CGGCG TTTTTGTCTCCGAGA TERM 931 798544 - 798523 - g 70 -10.9 -2.79679 | AATACTGGCAGCATA TGCTCGACA GTTA TGCCGAGCA GGCAGATAACATGCC yfaSR 795138 - 799652 + | large extracellular alpha-helical protein TERM 932 800694 - 800707 + G 74 -3.1 -5.00616 | gap 1, opp_overlap 800685, overlap 800679 GCGAAAGCCATGACT GTGGCG ATT CGC-AC TTTTTTACAGCAAAA TERM 933 801064 - 801049 - g 95 -6 -5.40072 | opp_overlap 801049, overlap 801050 GGCTGGCGAAAAAAA TGCCGC AGTG GCGGCG TATATTACAAGGCGA TERM 934 801063 - 801050 - g 76 -9.5 -3.83561 | opp_overlap 801049, overlap 801049 GCTGGCGAAAAAAAT GCCGC AGTG GCGGC GTATATTACAAGGCG SDY_0853 799653 - 801302 + | hypothetical protein TERM 935 801405 - 801434 + G 70 -3.6 -4.60041 | gap 2 CGCACCGCTCTCAGG CTGGCATC--CGGC AGAG GGCGAAGATGCCAG TTTTTCACAATCGAT SDY_0854 801307 - 801831 + | hypothetical protein TERM 936 801848 - 801836 - g 82 -7.7 -4.57073 | CACCGTGCTGAAAAA CAGTG GTG CACTG GATATGGATGTCACG SDY_0855 801825 - 802082 + | hypothetical protein TERM 937 802131 - 802186 + F 78 -6 -4.78157 | overlap 802135 TTCAGATAAGACTGC TGGGCGATCTGCCGACGCCAGGATAT AACC ATTAACAAGCGTCGGCAGATTGGTCA TTTCTTATTTTTCGT TERM 938 802640 - 802659 + G 82 -11.4 -3.55815 | opp_overlap 802640, overlap 802655 802657 CGCGTGGACGAGAAA CGCAGGCG GATG TGCCTGCG TTTGAACCGCTGTTT TERM 939 802659 - 802640 - g 86 -10.7 -3.96148 | opp_overlap 802640 802655 802657 CGCGTGGACGAGAAA CGCAGGC GGATGT GCCTGCG TTTGAACCGCTGTTT TERM 940 802739 - 802760 + G 75 -4.5 -4.8543 | gap 1, overlap 802742 AGTCATTGGCGTGGT TTAT-GCGCT ACT GGCGCGATAA TTTTTCTGCGGCTTA rcsC 802357 - 805206 + | hybrid sensory kinase in two-component regulatory system with RcsB and YojN TERM 941 805214 - 805272 + T 82 -11 -3.51137 | opp_overlap 805216 805217 805249 805250, overlap 805216 805217 805246 805249 AATCGTAGGACGGAT AAGGCGTTTACGCCGCATCTGGCATT CAGTGCA AATGCCAGATGCGACGCTGACGCGTC TTATCTGGCCTACTT TERM 942 805216 - 805270 + T 90 -13.6 -3.32698 | opp_overlap 805216 805217 805249 805250, overlap 805214 805217 805246 805249 TCGTAGGACGGATAA GGCGTTTACGCCGCATCTGGCATT CAGTGCA AATGCCAGATGCGACGCTGACGCG TCTTATCTGGCCTAC TERM 943 805270 - 805216 - T 100 -17.2 -3.37796 | opp_overlap 805214 805216 805217 805246 805249, overlap 805217 805249 805250 TCGTAGGACGGATAA GGCGTTTACGCCGCATCTGGCATTCA GTG CAAATGCCAGATGCGACGCTGACGCG TCTTATCTGGCCTAC TERM 944 805269 - 805217 - T 100 -20.7 -2.62463 | opp_overlap 805217 805216 805214 805246 805249, overlap 805216 805249 805250 CGTAGGACGGATAAG GCGTTTACGCCGCATCTGGCATTCA GTG CAAATGCCAGATGCGACGCTGACGC GTCTTATCTGGCCTA TERM 945 805217 - 805269 + T 100 -17.1 -2.59298 | opp_overlap 805216 805217 805249 805250, overlap 805216 805214 805246 805249 CGTAGGACGGATAAG GCGTTTACGCCGCATCTGGCATT CAGTGCA AATGCCAGATGCGACGCTGACGC GTCTTATCTGGCCTA TERM 946 805282 - 805249 - T 75 -9.5 -3.61178 | opp_overlap 805217 805216 805214 805249 805246, overlap 805217 805216 805250 GGCATTCAGTGCAAA TGCCAGATGCGACGC TGAC GCGTCTTATCTGGCC TACTTTAATGTAATC TERM 947 805249 - 805282 + T 78 -11.7 -3.00585 | opp_overlap 805217 805216 805249 805250, overlap 805217 805216 805214 805246 GGCATTCAGTGCAAA TGCCAGATGCGACGC TGAC GCGTCTTATCTGGCC TACTTTAATGTAATC TERM 948 805281 - 805250 - T 82 -13 -2.76492 | opp_overlap 805217 805216 805214 805249 805246, overlap 805217 805216 805249 GCATTCAGTGCAAAT GCCAGATGCGACGC TGAC GCGTCTTATCTGGC CTACTTTAATGTAAT TERM 949 805396 - 805363 - T 95 -14.7 -3.55622 | opp_overlap 805373, overlap 805331 805364 GGCAATCGGTGCAAA TGCCAGATAAGACAC TAAC GCGTCTTATCTGGCC TACAGGTGATTAGTC TERM 950 805395 - 805364 - T 100 -18.2 -2.73159 | opp_overlap 805373, overlap 805331 805363 GCAATCGGTGCAAAT GCCAGATAAGACAC TAAC GCGTCTTATCTGGC CTACAGGTGATTAGT rcsB 806056 - 805406 - | transcriptional regulator RcsB yojN 808745 - 806073 - | phosphotransfer intermediate protein in two-component regulatory system with RcsBC TERM 951 807378 - 807404 + g 70 -5 -4.56978 | opp_overlap 807386 CCCCTGCTGGTTTTT CTCATACAGACG CTG CGCCTGCTTGAG TTTCTTGTTTACCAG TERM 952 809083 - 809065 - R 100 -14.6 -5.81032 | GAAGGGTAAAAAAAA CCGGATGC GAG GCATCCGG TTGAAGTAGGGGTAA SDY_0859 809577 - 809182 - | iso-IS1 ORF2 SDY_0860 809772 - 809999 + | hypothetical protein ompC 810258 - 811385 + | outer membrane porin protein C TERM 953 811400 - 811427 + F 80 -12.8 -3.10622 | opp_overlap 811407, overlap 811407 ATCTCGATTGATATC GAACAAAGGGCC TGCG GGCCCTTTTTTC ATTGTTTTCAGCGTA TERM 954 811407 - 811420 + F 100 -9.5 -5.43514 | opp_overlap 811407, overlap 811400 TTGATATCGAACAAA GGGCC TGCG GGCCC TTTTTTCATTGTTTT TERM 955 811420 - 811407 - f 87 -9.5 -4.23213 | opp_overlap 811407 811400 TTGATATCGAACAAA GGGCC TGCG GGCCC TTTTTTCATTGTTTT yojL 811497 - 812552 + | thiamine biosynthesis lipoprotein ApbE TERM 956 813663 - 813649 - g 82 -11.4 -3.53012 | GGCGCGTCGCGCAAA GCGCAG CTG CTGCGC CGCGAAGCTGAAAAT ada 812626 - 813690 + | O6-methylguanine-DNA methyltransferase alkB 813690 - 814340 + | DNA repair system specific for alkylated DNA TERM 957 815794 - 815784 - g 79 -2.4 -5.28826 | opp_overlap 815783 815784, overlap 815773 AAAGGGCAGAAAAAA CGCG TGG CGCT GTTGCTGGCGCTGGC yojI 814416 - 816059 + | multidrug transporter membrane component/ATP-binding component TERM 958 816645 - 816675 + G 78 -9.6 -3.92641 | overlap 816646 816649 CTGGGCGCACCAGGT CGAGCGCGGCGTGC TGC GTACTCCGCGTTCA TTTATCAATACCGTT TERM 959 816646 - 816674 + G 82 -13.1 -2.95102 | overlap 816645 816649 TGGGCGCACCAGGTC GAGCGCGGCGTGC TGC GTACTCCGCGTTC ATTTATCAATACCGT TERM 960 816649 - 816671 + G 81 -11.2 -3.61988 | overlap 816646 816645 GCGCACCAGGTCGAG CGCGGCGTGC TGC GTACTCCGCG TTCATTTATCAATAC TERM 961 816869 - 816859 - g 72 -6.8 -4.19624 | GATCCGCAACAGAAA GTGG CAG CCAC GCGTACGGAAATTGG yojH 816277 - 817923 + | malate:quinone oxidoreductase TERM 962 817963 - 817927 - T 100 -18.1 -2.71011 | opp_overlap 817929 817958 ATTGCGTTGTAATGA TGTGCCACATCCGGCAT GGT ATGCCGGATGTGGCGTA TGCTGATAAGACGCG TERM 963 817929 - 817961 + T 100 -22.9 -2.82516 | opp_overlap 817927, overlap 817958 TGCGTTGTAATGATG TGCCACATCCGGCAT GGT ATGCCGGATGTGGCG TATGCTGATAAGACG SDY_0867 819395 - 818619 - | IS600 ORF2 SDY_0868 819838 - 819536 - | IS600 ORF1 TERM 964 819936 - 819968 + H 74 -3.4 -5.05782 | GAATCACCTGACGCT TCATGCCTTTTTCA GCTTG TGGATAAGGCGCGA TTTTTTCCAGTGGCT TERM 965 820320 - 820330 + H 74 -6.8 -4.19817 | CGCCACTCTTTTGAT CCTG CTA CAGG TTTTACCTCGATCGG napF 820463 - 820957 + | ferredoxin-type protein napD 820947 - 821210 + | assembly protein for periplasmic nitrate reductase napA 821207 - 823693 + | nitrate reductase TERM 966 823838 - 823807 - g 81 -12.4 -3.21276 | gap 1, overlap 823812 GCTGGGGTTACAACA GCAAACCGCACGC GCATCTG GCGTGCGG-TTGC GCCCGCCCGGAGCCA TERM 967 823834 - 823812 - g 90 -12 -3.97088 | overlap 823807 GGTTACAACAGCAAA CCGCACGC GCATCTG GCGTGCGG TTGCGCCCGCCCGGA napG 823700 - 824395 + | quinol dehydrogenase periplasmic component TERM 968 824905 - 824919 + G 88 -11.4 -3.80174 | overlap 824909 TGGTAATGGGCTTCG GCAGCG GCG CGCTGC TTATTCTCGCGCTGT TERM 969 824909 - 824933 + G 86 -3.5 -5.35815 | overlap 824905 AATGGGCTTCGGCAG CGGCGCG CTGCTTATTCT CGCGCTG TTTTTATTTGATCTA napH 824382 - 825245 + | quinol dehydrogenase membrane component TERM 970 825577 - 825600 + G 70 -5.9 -4.18674 | overlap 825578 CAGCGACGGCAAAGT GGGCGCGGA AGTGGC TCCGCGTCG TTATTTCTGTCTGCA napB 825242 - 825691 + | diheme cytochrome c550 TERM 971 825877 - 825851 - g 73 -3.7 -4.74504 | ACCGGAATGGAAAAA GCCAATACCGA GGAGT TCTGCATTAGC TGCCACGAAATGCGT napC 825701 - 826303 + | cytochrome c-type protein NapC ccmA 826322 - 826939 + | cytochrome c biogenesis protein CcmA TERM 972 827467 - 827483 + G 81 -10.8 -3.57797 | CTCATCTTTGCCACC GCCGCG ATGGA CGCGGC TTCTATGCATTTGCC ccmB 826936 - 827598 + | heme exporter protein B TERM 973 827917 - 827943 + G 71 -9.4 -3.54626 | overlap 827915 827918 TGGCCAACCTGGCGG TGGCGGCAATGG CCC CCATTGGTGCCG TGTTTACCTTTATTG TERM 974 827918 - 827942 + G 70 -10.7 -2.71691 | overlap 827917 827915 GGCCAACCTGGCGGT GGCGGCAATGG CCC CCATTGGTGCC GTGTTTACCTTTATT TERM 975 828220 - 828255 + G 90 -7.5 -4.8143 | gap 1, opp_overlap 828220 GAATGCAGCAAAGTA TCGATCCGGCGATGCG TTCGC CGCTGCGCTGG-TCGA TTTTTGGCTTCTTGC ccmC 827640 - 828377 + | heme exporter protein C TERM 976 828416 - 828427 + G 95 -7.2 -5.38047 | GAATTTTTCGCAATG GGCG GTTA CGCC TTTTTTGTCTGGCTG ccmD 828374 - 828583 + | heme exporter protein C ccmE 828580 - 829059 + | cytochrome c-type biogenesis protein CcmE ccmF 829056 - 830999 + | cytochrome c-type biogenesis protein dsbE 830996 - 831553 + | disulfide oxidoreductase TERM 977 831543 - 831555 + F 74 -3.3 -5.07486 | AATACAGTAAGGAGG CCGCA CAA TGAGG TTTTTATTGGGCGTG TERM 978 832324 - 832314 - g 72 -4.6 -4.62069 | CCTCGATCCTAAAAA CAGC GAT GCCG CACTGGGTTATGCTG ccmH 831550 - 832602 + | subunit of heme lyase TERM 979 832634 - 832606 - T 100 -11 -5.35815 | overlap 832607 GAGAGTAAATAAAAA GTGGCCCGATGG TGATT CCATCAGGCCAG ACTGATGACAAAGTG TERM 980 832633 - 832607 - T 100 -14.5 -3.79862 | overlap 832606 AGAGTAAATAAAAAG TGGCCCGATGG TGATT CCATCAGGCCA GACTGATGACAAAGT TERM 981 832654 - 832699 + T 73 -11.1 -2.66912 | overlap 832671 ATGACAAAGTGCGCT TAGTTTATGCCGGATGCGGCG TGAA CGCCTTATCCGGCCTACACAA TCGTGTGAATTCAAT TERM 982 832783 - 832809 + T 91 -8 -5.18726 | opp_overlap 832781, overlap 832785 GTTTGTCATAAATCT CAGCCCGATG ATAAATC CATCGGGCTA TTTTTATTGTGCCCC TERM 983 832785 - 832807 + T 90 -10.6 -4.22377 | opp_overlap 832781, overlap 832783 TTGTCATAAATCTCA GCCCGATG ATAAATC CATCGGGC TATTTTTATTGTGCC narP 833460 - 832813 - | transcriptional regulator NarP SDY_0886 834484 - 834089 - | iso-IS1 ORF2 insB 835344 - 835141 - | IS1 ORF2 insA 835664 - 835389 - | IS1 ORF1 TERM 984 837182 - 837155 - g 70 -9.8 -3.23853 | overlap 837153 GTTCGGCAATTAACA CCCGCAACAACG TGAC CACTGATGCGGG AGCTGGTTTTGAGCA yejO 835867 - 837921 + | putative ATP-binding component of a transport system TERM 985 837966 - 837929 - T 79 -12.1 -3.17146 | opp_overlap 837936, overlap 837932 837936 CGTTCTGATAACAGA CAATAAACAGGCCGTGA TGTG TCGCGGTCTGTTTATCG AATTAAATGCAGATA TERM 986 837963 - 837932 - T 83 -10.2 -3.72788 | opp_overlap 837936, overlap 837929 837936 TCTGATAACAGACAA TAAACAGGCCGTGA TGTG TCGCGGTCTGTTTA TCGAATTAAATGCAG TERM 987 837959 - 837936 - T 75 -6.6 -4.47158 | opp_overlap 837936, overlap 837932 837929 ATAACAGACAATAAA CAGGCCGTGA TGTG TCGCGGTCTG TTTATCGAATTAAAT TERM 988 837936 - 837959 + T 87 -11 -3.9279 | opp_overlap 837936 837932 837929 ATAACAGACAATAAA CAGGCCGTGA TGTG TCGCGGTCTG TTTATCGAATTAAAT TERM 989 838006 - 837990 - T 100 -8 -5.76633 | opp_overlap 837990 GCAGATATAAAAAAA CCAACC TTTAC GGTTGG TTTTTTTTGGGATTT TERM 990 837990 - 838006 + T 100 -8 -5.82388 | opp_overlap 837990 GCAGATATAAAAAAA CCAACC TTTAC GGTTGG TTTTTTTTGGGATTT yejM 839934 - 838174 - | putative sulfatase TERM 991 838587 - 838607 + g 70 -9.7 -3.2665 | overlap 838585 GTGGAATACCCCGAC CGGCAGTGA TAA TCACTACCG TATTGTCCAGTTTGC TERM 992 839097 - 839084 - G 76 -8.1 -4.25104 | opp_overlap 839086 839093, overlap 839067 TTTTGCTCAGCAAAA CCTGC CAGC GCAGG CATCTGCTTCTCGAA TERM 993 839536 - 839502 - G 81 -6.5 -4.78572 | gap 1, overlap 839505 GTTCAAGCAATAAAA TAACCGGCACGCTGAT GAAC ATCAGC-TGCCAGTCG CGCGCCATCTCATTT TERM 994 839533 - 839505 - G 93 -10.4 -4.48997 | gap 1, overlap 839502 CAAGCAATAAAATAA CCGGCACGCTGAT GAAC ATCAGC-TGCCAG TCGCGCGCCATCTCA yejL 840181 - 839954 - | hypothetical protein TERM 995 840221 - 840232 + H 100 -5.8 -6.04378 | opp_overlap 840209 840221 AAGGGCAACATATTA CCGT AGCA ACGG TTTTTTTTCTGCTTT TERM 996 841333 - 841374 + G 90 -7.4 -4.74285 | gap 2, opp_overlap 841318 841341, overlap 841334 CGCCGCCGAATTTGC GCGATCAATTGCAGCGCCGG ACGT CCGGCG--GCAATTAATCGG TTTTGTGTTATGAAT TERM 997 841334 - 841373 + G 78 -10.9 -3.43486 | gap 2, opp_overlap 841318 841341, overlap 841333 GCCGCCGAATTTGCG CGATCAATTGCAGCGCCGG ACGT CCGGCG--GCAATTAATCG GTTTTGTGTTATGAA yejK 840363 - 841370 + | nucleoid-associated protein NdpA TERM 998 841493 - 841464 - T 93 -15.9 -2.90219 | opp_overlap 841471, overlap 841471 CATAATCTGCAGATA CAAAAAACCCCGC CGGA GCGGGGTTTTTTA CAACTTATTCAGCAA TERM 999 841486 - 841471 - T 100 -11.8 -5.4251 | opp_overlap 841471, overlap 841464 TGCAGATACAAAAAA CCCCGC CGGA GCGGGG TTTTTTACAACTTAT TERM 1000 841471 - 841486 + T 100 -11.8 -5.06103 | opp_overlap 841471 841464 TGCAGATACAAAAAA CCCCGC CGGA GCGGGG TTTTTTACAACTTAT rplY 841793 - 841509 - | 50S ribosomal protein L25 yejH 843678 - 841918 - | putative ATP-dependent helicase rsuA 843828 - 844523 + | 16S rRNA pseudouridylate synthase A TERM 1001 845059 - 845073 + G 80 -11.4 -3.41878 | ACATCTTCTGGATCC TCGCCG TGG CGGCGA TTCTGGCTTCGGCAA bcr 844551 - 845741 + | bicyclomycin/multidrug efflux system TERM 1002 845757 - 845774 + F 76 -7.7 -4.26202 | opp_overlap 845757 TCTATTGCACAACGA GGAAGCT AAAA GGCTTCC TTTGTTGATGCATGT yejG 846074 - 846418 + | hypothetical protein yejF 848011 - 846422 - | putative ATP-binding component of a transport system yejE 849038 - 848013 - | putative transport system permease protein TERM 1003 848173 - 848153 - G 70 -11.2 -2.73875 | overlap 848150 TCCCTTGTAACAGCA GTTCACCG AGTGA CGGTGAAC CGAGCGGCAGACCGA yejB 850132 - 849038 - | putative transport system permease protein TERM 1004 849287 - 849242 - G 80 -5.3 -5.02074 | overlap 849255 CGAGCCGGTAAAAAA CATGCTGATAAACGTCGCCGG AAAA CCGGCAATCACCAGCAGCATG GCGTTGCGGAACACA yejA 851947 - 850133 - | hypothetical protein TERM 1005 851052 - 851071 + g 79 -2.2 -5.25803 | gap 1, overlap 851054 851055 GCTGATTCGTTCTTT TGC-TCATC TTT GATGATGTA TTTTTTATCGAAATT rtn 853585 - 852029 - | hypothetical protein TERM 1006 852303 - 852285 - G 71 -9.6 -3.50447 | overlap 852267 852297 TCAATTTTCAGATAA TCGAGCGT AAA ACGCTCAA GATAGATAAGCGCGC TERM 1007 852881 - 852869 - G 70 -4.1 -4.72272 | GCCGCCCAGTAAAAA TGCGT ACC ACACA TCGTTCCATGTCCAG TERM 1008 853093 - 853112 + g 70 -4.9 -4.56597 | overlap 853095 TCAGGTTGAGATTCA GAGCGGC AAAGAC GCCGCTA TTTTTCAGCAAAGGG TERM 1009 853095 - 853110 + g 72 -7.5 -3.90048 | overlap 853093 AGGTTGAGATTCAGA GCGGC AAAGAC GCCGC TATTTTTCAGCAAAG TERM 1010 853716 - 853699 - R 100 -11.3 -5.85244 | opp_overlap 853699 AATGAAAACAAAAAA GCACTGC CTAA GCAGTGC TTTCAGTTAACTCGT TERM 1011 853699 - 853716 + r 86 -11.3 -3.77219 | opp_overlap 853699 AATGAAAACAAAAAA GCACTGC CTAA GCAGTGC TTTCAGTTAACTCGT spr 854332 - 853766 - | putative outer membrane lipoprotein TERM 1012 853856 - 853843 - G 70 -6.7 -4.08557 | overlap 853845 TGCTGGAAATAATAA CACCA CTGC TGGTG GAAGCATGGACAAAC TERM 1013 854395 - 854384 - R 79 -2.2 -5.61596 | ATCGTTATAAAAAAA TGCC AGGC GACA CGAGACTAATTACCT SDY_0905 855493 - 854744 - | hypothetical protein TERM 1014 855196 - 855206 + g 75 -4.6 -4.86731 | TCACGATACGTCGTC TGCC AGG GGCG TTTTCTTTCAGCCAG TERM 1015 855436 - 855446 + g 73 -4 -4.81734 | opp_overlap 855436 TATTCAACAACACTA TTTG CGG CAAA TTTTTAATCATATTT yeiR 856482 - 855496 - | hypothetical protein TERM 1016 856589 - 856551 - R 76 -8.1 -4.02581 | opp_overlap 856558 CGGCAGAAAAGAGAA GGGGAGAGCGGACGAAG GCGAG CTTCATCCGCTTTAACC GCAGAAATCGTTAAA TERM 1017 856558 - 856582 + r 75 -10 -3.53091 | opp_overlap 856551 AAAGAGAAGGGGAGA GCGGACGAAG GCGAG CTTCATCCGC TTTAACCGCAGAAAT yeiQ 858066 - 856657 - | putative oxidoreductase TERM 1018 858268 - 858249 - R 100 -10 -5.46129 | opp_overlap 858249 TAATAAATTAAAAAA GGGACAGC CTGA GCTATCCC TTTTCTGCATGCGGC TERM 1019 858249 - 858268 + r 79 -7.8 -4.42386 | opp_overlap 858249 TAATAAATTAAAAAA GGGACAGC CTGA GCTATCCC TTTTCTGCATGCGGC yeiP 858861 - 858289 - | elongation factor P TERM 1020 859037 - 859056 + r 71 -10 -3.27525 | gap 1, overlap 859025 859033 TGCCGTCCGGGTTGC GGGGC-GTG TTG CACTGCCCC TTCAATTTCCAGCCC yeiO 860448 - 859267 - | putative transport SDY_0910 860803 - 860588 - | iso-IS1 ORF2 SDY_0911 861177 - 861503 + | hypothetical protein TERM 1021 862173 - 862157 - g 72 -4.4 -4.71463 | gap 1, opp_overlap 862157 AATGAAAACAACAAA GCAG-GG TATA CCGCTGC GTTTTGGCGCGATAG SDY_0912 861552 - 862385 + | hypothetical protein SDY_0913 862959 - 863174 + | iso-IS1 ORF2 SDY_0914 863152 - 864219 + | FimH-like protein SDY_0915 864263 - 864772 + | putative fimbrial-like protein SDY_0916 864732 - 865295 + | putative fimbrial-like protein ycbF 865261 - 865998 + | hypothetical protein TERM 1022 866720 - 866709 - g 74 -3 -4.91852 | GCGATTAAAAATAAA CAAA ATGA TTTG CAAGCGATGCACCAT TERM 1023 866951 - 866932 - g 70 -4.2 -4.65895 | overlap 866936 CGCTTCAGTTAAAAA GCACCGAA ATTA TTCGCCGC TTGTCACTGGAATTA pyrD 866109 - 867119 + | dihydroorotate dehydrogenase 2 TERM 1024 867141 - 867184 + F 74 -10.6 -3.22448 | opp_overlap 867151 867152 867154, overlap 867148 867152 CTTCGAATTCCTCTT TATAAGATAATCAGGGCT TTATTTTC AGCCCTGGTTGTTTTATA TTCATCACTGTTGCT TERM 1025 867148 - 867177 + F 78 -6.5 -4.70583 | opp_overlap 867151 867152 867154, overlap 867141 867152 TTCCTCTTTATAAGA TAATCAGGGCT TTATTTTC AGCCCTGGTTG TTTTATATTCATCAC TERM 1026 867567 - 867582 + G 71 -2.5 -4.88918 | ATCTCAAACCGCAAA TGCCG AAAAGC TGGCA TTTTGTTTCCCATGG ycbW 867257 - 867835 + | hypothetical protein SDY_0920 868941 - 867832 - | hypothetical protein TERM 1027 868422 - 868439 + g 75 -5.5 -4.62069 | opp_overlap 868413 868414 CGGAAACCACCAGAT TGGGGCG GAAT TGCTCCA TTTTTACACTGGCCG TERM 1028 870667 - 870651 - g 70 -3.7 -4.6902 | CCAGAAGGGCAAAAA CCAGT ACCAGAA ACTGG GCGAGAAGGGCGAGT ycbY 869185 - 871293 + | 23S rRNA m(2)G2445 methyltransferase uup 871305 - 873212 + | ABC transporter ATPase component TERM 1029 873286 - 873258 - f 83 -8.9 -4.21936 | overlap 873259 CTGACAACGGTAAAA TTGCCTGATGAAC TGG GTTTATCAGGCAT GAAAACCAACACTTT TERM 1030 873285 - 873259 - f 81 -12.4 -3.1268 | overlap 873258 TGACAACGGTAAAAT TGCCTGATGAAC TGG GTTTATCAGGCA TGAAAACCAACACTT TERM 1031 873740 - 873756 + G 72 -4.3 -4.62069 | opp_overlap 873740 GGTCCGTTTAAAAGA GCAACTG GCA CGGGTGC TTTTTCAACTCAAAA pqiA 873342 - 874595 + | paraquat-inducible protein A TERM 1032 874688 - 874699 + G 82 -2.2 -5.37345 | overlap 874677 874676 TCACGGCGCTCATTG GAGC CTGG GTTC TTTTTTATCATTACA TERM 1033 874782 - 874768 - g 70 -10 -3.23899 | overlap 874763 GCGGAAGGAATTGAA GGTGGT AAA ACCACC ATTAAAAGCCGTAGC TERM 1034 875390 - 875404 + G 70 -4.3 -4.58424 | GGCAGCCAGTGGCAC CGAAA ACAGC TTTCG TTTTGTATGATGATC pqiB 874600 - 876240 + | paraquat-inducible protein B ymbA 876252 - 876800 + | hypothetical protein TERM 1035 876823 - 876849 + F 100 -10.8 -6.02919 | opp_overlap 876823 GATTTGTAAATATAA CCGTCTCCGGTA TGT TGCCTGAGGCGG TTTTTTTGTTTCTAA TERM 1036 876989 - 877015 + F 72 -3 -5.07652 | overlap 876990 876991 CGCGGTATTGCTTAA CTGTGATTGC ACATTTA GTAATCACTG TTTTCTTTTCCACCA rmf 877056 - 877223 + | ribosome modulation factor TERM 1037 877238 - 877268 + T 79 -8.2 -4.34345 | opp_overlap 877241 877245, overlap 877240 877245 ATTCTGTCTCTTTAA AAAGAAACCTCCGC ATT GCGGAGGTTTCGCC TTTTGATACTCTGTC TERM 1038 877240 - 877266 + T 90 -15.2 -2.51207 | opp_overlap 877241 877245, overlap 877238 877245 TCTGTCTCTTTAAAA AGAAACCTCCGC ATT GCGGAGGTTTCG CCTTTTGATACTCTG TERM 1039 877265 - 877241 - T 100 -18.7 -4.56597 | opp_overlap 877240 877238 877245, overlap 877245 CTGTCTCTTTAAAAA GAAACCTCCGC ATT GCGGAGGTTTC GCCTTTTGATACTCT TERM 1040 877261 - 877245 - T 100 -13.7 -4.85782 | opp_overlap 877245 877240 877238, overlap 877241 CTCTTTAAAAAGAAA CCTCCGC ATT GCGGAGG TTTCGCCTTTTGATA TERM 1041 877245 - 877261 + T 100 -13.7 -3.77484 | opp_overlap 877241 877245, overlap 877240 877238 CTCTTTAAAAAGAAA CCTCCGC ATT GCGGAGG TTTCGCCTTTTGATA fabA 877811 - 877293 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase ycbG 879851 - 880303 + | hypothetical protein TERM 1042 880358 - 880343 - T 100 -11.8 -5.82388 | opp_overlap 880343 AAAGGCGAAAAAAAA CCCCGC AGCT GCGGGG TTTTTCTACCAGACG TERM 1043 880343 - 880358 + T 100 -11.8 -4.82901 | opp_overlap 880343 AAAGGCGAAAAAAAA CCCCGC AGCT GCGGGG TTTTTCTACCAGACG ompA 881431 - 880379 - | outer membrane protein A SDY_0931 882087 - 882389 + | IS600 ORF1 SDY_0932 882530 - 883315 + | IS600 ORF2 SDY_0934 883786 - 884415 + | hypothetical protein SDY_0935 886540 - 884378 - | hypothetical protein TERM 1044 885133 - 885107 - G 77 -2.9 -5.16572 | gap 1, overlap 885109 885112 885124 885125 885127 ACGGAAGGCAAAAAA GAGCACGCCGGT AATA ACCAGCA-GCAC CAGCTGCCCTTCCAG TERM 1045 885275 - 885264 - G 72 -4.4 -4.62441 | TGGCAGACAAACAAA CTTG TCAG CAAG ATCCAATACCCGTGA TERM 1046 885685 - 885660 - G 72 -8.3 -3.745 | gap 1, overlap 885662 TGACGCAGTAAAATA CA-GCGTGACAG TTG CTGGCACGCCTG GCCCTGCATCGACAT TERM 1047 885682 - 885662 - G 78 -11.1 -3.45073 | overlap 885660 ACGCAGTAAAATACA GCGTGACAG TTG CTGGCACGC CTGGCCCTGCATCGA yccF 886996 - 886550 - | hypothetical protein TERM 1048 886582 - 886594 + g 71 -9.1 -3.52906 | overlap 886579 GTGCATTGGCTTCAC GCGCA GCT TGCGC TGTTTCTACCGATAC TERM 1049 886917 - 886903 - G 75 -5 -4.75174 | GAGGTAAGGTAAAAA TCAGCA CAA TACTGA CCAGAGTCGCCAACA helD 887119 - 889173 + | DNA helicase IV TERM 1050 889197 - 889178 - T 100 -13.6 -4.24711 | opp_overlap 889174 889171 GAAAACCGTAAGAAA CAGGTGGC GTTT GCCACCTG TGCAATATTACTTCA mgsA 889663 - 889205 - | methylglyoxal synthase TERM 1051 889749 - 889736 - R 88 -8.1 -4.77986 | overlap 889738 TTAAAGACCGAAAAA GCCTG CGCA CAGGC ACAAAAATCTCAGGA SDY_0939 890421 - 889759 - | hypothetical protein TERM 1052 890772 - 890754 - g 77 -8.8 -4.08064 | AAGTTGCCGGCAAAA CGCTGCTG GGC CAGCAGGG GTATGGCACGCTGGC SDY_0940 890513 - 891007 + | hypothetical protein TERM 1053 891039 - 891012 - T 100 -17.8 -5.63517 | opp_overlap 891012 TGGCCAAATAAAAAA TCCCCGGAAGGC AAAA ACCTTCCGGGGA TTTGTTCAGGGATTA TERM 1054 891012 - 891039 + T 100 -17.1 -4.1673 | opp_overlap 891012 TGGCCAAATAAAAAA TCCCCGGAAGG CAAAAA CCTTCCGGGGA TTTGTTCAGGGATTA yccV 891420 - 891052 - | hypothetical protein yccW 892623 - 891427 - | hypothetical protein TERM 1055 891548 - 891569 + g 72 -5.9 -4.40358 | gap 1, opp_overlap 891552, overlap 891552 ACATCACGGCCGGCA TCAATTGCGG CAT CCGCGAT-GA TTTTCTGAAATAAAT SDY_0943 892718 - 892996 + | hypothetical protein yccK 893322 - 892993 - | sulfurtransferase TusE TERM 1056 893057 - 893088 + g 91 -8 -5.06414 | opp_overlap 893062 TTAGCCGGACCTTTC GGAAACAGTCGGTA TAAA TAGCGGCTGTTACC TTTTTCTTCGCCAAA TERM 1057 893393 - 893367 - R 100 -10.1 -5.46657 | CAGTGTAACAAAAAA CAAAGCCCCGC ATAAA GCGAGGCTATG ACAGTGTTAGCGGGT yccA 894072 - 893413 - | hypothetical protein TERM 1058 893854 - 893867 + g 70 -5.2 -4.42386 | GGAGATAATCCCGGT CGGC TTATTC GCCG TTTTATAGGTCAGGA TERM 1059 894275 - 894249 - H 100 -6.5 -6.37666 | opp_overlap 894246 894251, overlap 894250 894251 ACAAAAGAAAAAAAA GGGGGGTTAGC ATTTA GCTAACCCCTT ATCTTATTTGGCGGA TERM 1060 894274 - 894250 - H 87 -10 -4.37109 | opp_overlap 894246 894251, overlap 894249 894251 CAAAAGAAAAAAAAG GGGGGTTAGC ATTTA GCTAACCCCT TATCTTATTTGGCGG TERM 1061 894273 - 894251 - H 83 -13.5 -3.18605 | opp_overlap 894246 894251, overlap 894250 894249 AAAAGAAAAAAAAGG GGGGTTAGC ATTTA GCTAACCCC TTATCTTATTTGGCG TERM 1062 894251 - 894273 + H 95 -13.5 -3.90464 | opp_overlap 894251 894250 894249, overlap 894246 AAAAGAAAAAAAAGG GGGGTTAGC ATTTA GCTAACCCC TTATCTTATTTGGCG hyaA 894797 - 895915 + | hydrogenase-1 small subunit TERM 1063 896100 - 896121 + G 72 -10.1 -3.35371 | gap 1, overlap 896120 CATCCTGCAAGGGCG CGACCCGCGC GAT GCGTGGG-CG TTCGTTGAACGTATC TERM 1064 897123 - 897109 - g 72 -8.5 -3.72893 | overlap 897110 TACTCGTGGATCAAA GCGCC CCGCT GGCGC GGTAACGCGATGGAA hyaB 895912 - 897618 + | hydrogenase 1 large subunit hyaC 897710 - 898417 + | hydrogenase 1 b-type cytochrome subunit hyaD 898414 - 899001 + | hydrogenase 1 maturation protease hyaE 898998 - 899396 + | hydrogenase-1 operon protein HyaE TERM 1065 900821 - 900856 + G 70 -5.4 -4.34402 | gap 1, opp_overlap 900821 ATTGTGGATATTGAA TGC-CAACGGTTGGATG CAA TACCCGACCGGTGCGCA TTTTGATATCGACAC TERM 1066 901300 - 901290 - g 77 -8.2 -4.0942 | CACTCATTAGATAAA CCCG TGC CGGG TCTGAAGAATTTGAT appC 900384 - 901928 + | third cytochrome oxidase, subunit I appB 901940 - 903076 + | third cytochrome oxidase, subunit II yccB 903089 - 903181 + | hypothetical protein TERM 1067 903572 - 903557 - g 72 -4.6 -4.7254 | opp_overlap 903564 903565, overlap 903558 ATTGCTGACGAAAAA GGGCTG CCCG CAGCCT GGTCAGGTCGCGATT TERM 1068 903734 - 903721 - g 72 -4.5 -4.59853 | overlap 903722 TTAATCCTCTAAAAA CTGGC GTTT GCCAA CTGGATAACGCGAAC appA 903261 - 904565 + | phosphoanhydride phosphorylase TERM 1069 904600 - 904577 - T 100 -14 -5.31456 | opp_overlap 904582 GTAATGTATAAAAAA GAGCATTCAG CTAC CTGAATGCTC TGAGGCTGATGACAA yccC 906865 - 904685 - | cryptic autophosphorylating protein tyrosine kinase Etk TERM 1070 905810 - 905824 + g 72 -5.6 -4.56597 | overlap 905812 GCGTTTGCGTTCTTG CTCCAG CGT CTGGCG TTTTTCCAGCAGCGC TERM 1071 906446 - 906469 + g 70 -5.2 -4.40184 | TTGTGGAATATGCAT CCAGCTGATC GCCA GCTCACCTGG TTTCTCTTTGGTTAA etp 907331 - 906885 - | phosphotyrosine-protein phosphatase TERM 1072 906972 - 906986 + g 70 -6.4 -4.1891 | opp_overlap 906972, overlap 906968 CTGACTTTTACGATA GGGATC CGG GATCTC TTTCTGTTCCAGCCA TERM 1073 907277 - 907258 - G 72 -11.4 -2.50816 | overlap 907257 CGTTTACGCAGCAAG CGCTCGCC AATG GGCGAACG GCAAATGTTGCCGGT yccZ 908458 - 907319 - | putative function in exopolysaccharide production ymcA 910600 - 908504 - | hypothetical protein ymcB 911346 - 910600 - | hypothetical protein ymcC 911987 - 911343 - | putative regulator ymcD 912417 - 912094 - | hypothetical protein cspH 913053 - 912841 - | cold shock-like protein SDY_0965 913725 - 913330 - | iso-IS1 ORF2 yccM 914620 - 914060 - | hypothetical protein TERM 1074 914583 - 914604 + g 71 -2.9 -4.84311 | gap 1, overlap 914587 914588 CCGCCCGTCGTGCCT GGCCGCCGCT GCC AGCGG-GTTC TTTTATTCTCTGCCA TERM 1075 914587 - 914601 + g 72 -5.6 -4.51787 | overlap 914583 914588 CCGTCGTGCCTGGCC GCCGCT GCC AGCGGG TTCTTTTATTCTCTG TERM 1076 915122 - 915134 + H 76 -9.1 -3.76402 | AATAGTGAACTGGTA CGCTG GCG CAGCG TTTCGTCAATGACAT TERM 1077 917637 - 917659 + G 72 -7.6 -3.86346 | opp_overlap 917638, overlap 917638 GCCGCTTAAAGCCAA ACGCGCATGG AAA CTGTGCGCGC TTTATCCGAGCCTGA TERM 1078 917638 - 917658 + G 71 -11.1 -2.91593 | opp_overlap 917638, overlap 917637 CCGCTTAAAGCCAAA CGCGCATGG AAA CTGTGCGCG CTTTATCCGAGCCTG TERM 1079 918173 - 918143 - g 72 -8.2 -3.7456 | overlap 918167 ATAACGATATTGAAA TCCAGCGTAACCTG TTG CAGGAGATGCTGGA ACGCCATCCAGAAAT TERM 1080 918400 - 918427 + G 72 -5.6 -4.48987 | gap 1 CAATTACAGGGGCAA TCGGT-GTCTGAT AAT GTCAGCCCACCGA TTTTAGTTCTGACGC TERM 1081 918486 - 918450 - g 77 -6.5 -4.59773 | opp_overlap 918474 TCTGACGCCGAAAAA TGCCGACCGCGAACA TATCCGC CGCTCGCTGTCGCCA GGGGGATTTCGTCCG torT 917512 - 918540 + | periplasmic sensory protein associated with the TorRS two-component regulatory system torR 919205 - 918513 - | DNA-binding transcriptional regulator TorR TERM 1082 920814 - 920825 + H 72 -5.8 -4.38712 | CGACACCTCCCAGCG CGGT GATA ACCG TTTTGTGCGCGTGAG TERM 1083 923148 - 923130 - g 89 -13.1 -3.36823 | overlap 923125 TTGCTGAAAAGCGAA CCGCCGC TCACT GCGGCGG TGAATGAGCTGGAAA torD 922989 - 923588 + | chaperone protein TorD TERM 1084 923761 - 923791 + T 83 -14 -2.73364 | opp_overlap 923759 923758 923766, overlap 923767 ATGAGCTACAAACCG GGAAAGCCGCTGGC GCA GCAGGCGGTTTTCC TGCTTCAGGTGCGCA yccD 924045 - 923740 - | chaperone-modulator protein CbpM TERM 1085 923767 - 923785 + g 78 -8 -4.3534 | opp_overlap 923766 923759 923758, overlap 923761 TACAAACCGGGAAAG CCGCTGGC GCA GCAGGCGG TTTTCCTGCTTCAGG cbpA 924965 - 924045 - | curved DNA-binding protein CbpA TERM 1086 924165 - 924179 + g 77 -2.8 -5.14563 | overlap 924167 924174 TTTCAGTACCGCATA TAGATC GCC GGTCTG TTTTTTGCTCACCAG TERM 1087 924685 - 924665 - G 72 -6.9 -4.18494 | overlap 924680 CATGCTGACCGAAAA TTGACGAGA AGA TATCGTCAA AATCTTCGGCGTTAA SDY_0975 925531 - 925815 + | iso-IS1 ORF2 insB 926186 - 925809 - | IS1 ORF2 TERM 1088 927158 - 927174 + G 85 -2.9 -5.45056 | overlap 927152 927143 TTCAGGGTGTGGGTA GTCCCAT GTC ATGGAGC TTTCTTTTTTTTTAA SDY_0977 926614 - 927189 + | hypothetical protein TERM 1089 927705 - 927733 + F 93 -10.3 -4.61633 | opp_overlap 927707 GAGGCAGGGGCTAAT CAGGCATAGTTTG CGT CAAACCTTGCCTG TTTTTGAAGATATAT TERM 1090 928294 - 928278 - g 87 -4.3 -5.19212 | ATCACCAGGAAAAAA TGGGCAC CAT GGACCCA ACCTTTAACCCGGTG agp 927854 - 929095 + | glucose-1-phosphatase/inositol phosphatase TERM 1091 929125 - 929103 - T 100 -16.3 -4.84673 | opp_overlap 929099 TGAAATAACAGAAAA CTCCCCCGC GAGAA GCGGGGGAG TCACTGATTAAACGT yccJ 929360 - 929133 - | hypothetical protein wrbA 929977 - 929381 - | TrpR binding protein WrbA TERM 1092 930297 - 930282 - R 76 -7.6 -4.19817 | opp_overlap 930289 CCCACGTAGCGAAAA TATGGC AGCC GCCATA CGCCGCGTTAATTCT TERM 1093 930579 - 930597 + r 100 -13.1 -4.84918 | opp_overlap 930576 GTCAAAAAGTCATCA CCGCCGG TAATC CCGGCGG TTTTCTGTTTATGGC ycdG 932000 - 930606 - | putative transport protein SDY_0982 932413 - 931955 - | hypothetical protein SDY_0983 933050 - 932460 - | hypothetical protein TERM 1094 932619 - 932608 - G 75 -7.2 -4.30576 | overlap 932609 932610 TGTTGACGATCAAAA CCCG ACAT CGGG CCGGTATCCAGCCCC SDY_0984 933734 - 933060 - | putative acetyltransferase SDY_0985 934128 - 933742 - | hypothetical protein TERM 1095 934246 - 934233 - R 72 -8.1 -3.70773 | TTCGATATTGAACAA CGCAG CTTT CTGCG CAAATTCCGGCCCCG TERM 1096 934329 - 934311 - R 73 -2.2 -5.26918 | opp_overlap 934318, overlap 934312 934313 ATACTCCAGAAAAAA GCCGTCGC GTA GCGTCGAT TCGACGCAGACGTTG TERM 1097 934733 - 934752 + r 72 -6.4 -4.2349 | gap 1, opp_overlap 934731 CGAGATCTAAGTAGC CGCCTG-GC GTG GCATAGGCG TTTTGCATATCCACC SDY_0987 935980 - 934832 - | hypothetical protein TERM 1098 936288 - 936275 - g 88 -2.3 -5.4756 | overlap 936262 AACGCGAAGAAAAAA GCGAT TCTT AGCGC AGCACTGGACACTTT ycdC 936212 - 936850 + | putative tet operon regulator TERM 1099 936924 - 936909 - f 83 -10.4 -3.73775 | opp_overlap 936918 CCGATCGTCATTAAA CTGGCG TTAC CGCCAG CGGCAGCGGTATTCA TERM 1100 940423 - 940433 + F 79 -2.4 -5.63103 | opp_overlap 940416 GGACCATACCTGCGC GGCC ACT GGCA TTTTTTTGATTACGC TERM 1101 940546 - 940530 - f 74 -10.9 -2.82516 | overlap 940534 TGTTCCAGCAGCATA GAAACCG CTT CGGTTTC CGGGCGGCGATAGGC TERM 1102 940612 - 940600 - f 72 -6.3 -4.19817 | CCGACTGAGGCAAAA TTTGC TCG GCAAA GTCGAGGAATGGCTG TERM 1103 941115 - 941098 - f 71 -3.5 -4.74801 | gap 1 CAACCTGATGAAAAA TAGTG-TC GCT GAGCACTA AAATTTAATGTAAAT putP 941275 - 942783 + | major sodium/proline symporter TERM 1104 942826 - 942861 + T 73 -10.4 -3.02043 | TTTTTAACCCGAATG TTCCCTGCCATGCCGT ATAA ATTGCCTGGCAGGGAG TGTTCGGGGGCAATT SDY_0991 943825 - 942932 - | hypothetical protein TERM 1105 943746 - 943770 + g 72 -4.9 -4.70319 | overlap 943748 TGCTGGGCCGGGGAG TAGCGAGCATG CTT CATGCACCCTG TTTTGATTTTCATCC SDY_0992 944698 - 944561 - | iso-IS1 ORF2 insA 944740 - 945015 + | IS1 ORF1 insB 945060 - 945437 + | IS1 ORF2 SDY_0995 945732 - 945448 - | iso-IS1 ORF2 TERM 1106 946460 - 946440 - H 72 -3.2 -5.04385 | GATAGCCGTAAAAAA CCGGACAC AAGCG GTTTCCAG GGCAAACGATAACCT csgE 946490 - 946879 + | curli assembly protein CsgE csgF 946904 - 947320 + | curli assembly protein CsgF TERM 1107 947454 - 947497 + G 85 -11.8 -3.70902 | opp_overlap 947458, overlap 947458 TCGTGCTCAGAGCTA CAAAGATTTGACCCATCTGC CAAC GCCGACGGGTAAGATCTTTG TTTCGGTATACAACA TERM 1108 947458 - 947493 + G 77 -6.8 -4.48299 | opp_overlap 947458, overlap 947454 GCTCAGAGCTACAAA GATTTGACCCATCTGC CAAC GCCGACGGGTAAGATC TTTGTTTCGGTATAC TERM 1109 947710 - 947697 - g 75 -4.5 -4.78237 | opp_overlap 947697, overlap 947698 TACGGCACAAGAAAA CGGCA CGGT TGCCA TTAATAACCGAATCC csgG 947347 - 948180 + | curli production assembly/transport component TERM 1110 948210 - 948192 - f 95 -7.4 -5.4251 | opp_overlap 948192 948191 948208 CTGACAGATAAAAAA GCCGGA ATTATCA TCCGGC ATTTGGTGATGCCTC SDY_1000 948571 - 948966 + | iso-IS1 ORF2 TERM 1111 949001 - 949027 + T 100 -9.5 -5.01811 | opp_overlap 949005, overlap 949005 TTTTACTGCTTAAGC GAAAGCGTGAG TGCCC CTCACGCTTTA TTTTTGATTTCCTGC TERM 1112 949023 - 949005 - T 83 -10.3 -3.75332 | opp_overlap 949005 949001 ACTGCTTAAGCGAAA GCGTGAG TGCCC CTCACGC TTTATTTTTGATTTC TERM 1113 949005 - 949023 + T 100 -10.3 -5.00388 | opp_overlap 949005, overlap 949001 ACTGCTTAAGCGAAA GCGTGAG TGCCC CTCACGC TTTATTTTTGATTTC ycdZ 949557 - 949018 - | hypothetical protein TERM 1114 949072 - 949090 + g 71 -2.2 -4.88407 | overlap 949070 CTTTGCACTACGCGC CGCCAGCC ACA GGCCGCTG TTTTTCATTGCGTAA ycdY 950165 - 949611 - | putative oxidoreductase component ycdX 950926 - 950189 - | putative hydrolase TERM 1115 950634 - 950617 - G 72 -5.5 -4.57073 | CATGTGGCGCAAAAA CCGGCTC ATGA AAACCGG CAATAATCAGATCCA ycdW 951958 - 950981 - | putative dehydrogenase TERM 1116 952249 - 952273 + r 93 -7.2 -5.73978 | opp_overlap 952246 ACCGCCAGATTACGA GCGCATATTA TTGTT TAACATGCGC TTTTTTATTTATCCT SDY_1006 953232 - 952390 - | hypothetical protein TERM 1117 953287 - 953265 - R 89 -9.1 -4.61873 | opp_overlap 953265 GTTTATAAACGAAAA CGCCAGCCC TGTTC AGGCTGACG TCATTGGAATGAAGT SDY_1007 953526 - 953329 - | hypothetical protein SDY_1008 954029 - 953538 - | hypothetical protein yeeV 954400 - 954026 - | hypothetical protein TERM 1118 954178 - 954193 + g 70 -4.7 -4.56597 | overlap 954167 ATCCCGGCTGGTCGG TACGC ACCAGC GCGTA TTTTTCCACGAGAAA yeeU 954824 - 954447 - | putative structural protein TERM 1119 954571 - 954608 + g 74 -8.5 -4.00042 | gap 1 ACGGTATGCTGATGG CGGGGATTCA-GTTCACC GCT GGTGAGCATGAGTTCCAG TTGTTTCATCAGCAG SDY_1011 955518 - 954874 - | hypothetical protein yeeT 955758 - 955537 - | hypothetical protein SDY_1013 956279 - 955827 - | putative radC-like protein yeeS SDY_1014 956840 - 956295 - | hypothetical protein TERM 1120 957015 - 956986 - R 100 -16.5 -3.34455 | gap 1, opp_overlap 956981 956992, overlap 956981 TCATCAGAAATGGAA CGACACCCCGGCAG CGC CT-CCGGGGCGTCG GGTGATTCTGGTACC SDY_1015 957869 - 957048 - | hypothetical protein TERM 1121 957946 - 957921 - R 100 -13.3 -5.46129 | TAATAAATGAAAAAA GCCACGTCTCC CGGA GAAGACGCGGC CTGATGGACGAAATT SDY_1016 958526 - 958263 - | hypothetical protein SDY_1017 959644 - 959177 - | hypothetical protein TERM 1122 959770 - 959730 - RH 77 -12 -2.85545 | gap 1, opp_overlap 959752, overlap 959727 959725 959741 TTTTCAATAACACCA GCCAGGAAAAACACCACCA CAGG CGATGGCGTTTCTCC-GGC GCGTATTTATTTCAG TERM 1123 959757 - 959741 - RH 80 -6.5 -4.75372 | opp_overlap 959752, overlap 959730 959727 959725 ACCAGCCAGGAAAAA CACCACC ACA GGCGATG GCGTTTCTCCGGCGC SDY_1019 962162 - 961257 - | insertion element IS2 transposase InsD SDY_1018 960581 - 961423 + | IS600 ORF2 SDY_1020 962485 - 962120 - | insertion sequence 2 OrfA protein SDY_1021 963592 - 963197 - | iso-IS1 ORF2 TERM 1124 965944 - 965929 - g 79 -4.6 -4.9792 | TATGGCAGACAAAAA CCGCGT ACTC ATGCGG AAACCCGCAGTGAAG iroN 963985 - 966162 + | outer membrane receptor FepA TERM 1125 966180 - 966205 + T 100 -16.2 -3.79668 | GTAGTGTTTCAGGCG CACTGCCCGC GTAAAA GCGGGCAGTG TTTAGTGGCTTAACT iroE 967163 - 966207 - | hypothetical protein TERM 1126 966825 - 966835 + g 82 -3.2 -5.25803 | CCCGACAGCCACGAT CACT GGC GGTG TTTTTTCTGACAATT TERM 1127 966923 - 966911 - G 91 -9.1 -4.64591 | CAAGCATATATAAAA TCGGG TAA CCCGA TGCCGGTGCGGTTGT iroD 968477 - 967248 - | putative ferric enterochelin esterase TERM 1128 967775 - 967791 + g 81 -9.3 -4.06419 | opp_overlap 967771 TGCCCAGTACAGCCA CGGGCAC GAT GCGCCCG TTATTTATGGCGGCG iroC 972240 - 968581 - | putative ABC transporter protein TERM 1129 969945 - 969955 + g 77 -8.2 -4.07568 | opp_overlap 969932 GACTGGTGGCCGCAC CGGC AAG GCCG TTTTGCAGAAAGCGG TERM 1130 970449 - 970466 + g 70 -9.9 -3.21924 | overlap 970432 970429 970447 TCGCTGGTTCAGCCG GCCACAA TTCG TTGTGGC TATTGTGGGACGTGG TERM 1131 970973 - 970955 - G 71 -3.1 -4.78848 | overlap 970950 CCGGCAAACAGAAAA GCATCTT CAAAT ACGATGC CTACCCTGCGACGAA TERM 1132 971815 - 971852 + g 74 -10.7 -3.1552 | gap 1, opp_overlap 971792, overlap 971816 TGCCAGCGGCACCGG GCACATCTGCAGCAGG GTATGCA CCTGCTGCAGATC-GC TGTTGGTCCGTGAAA iroB 973495 - 972380 - | putative glycosyl transferase TERM 1133 973356 - 973369 + g 73 -3.7 -4.8543 | opp_overlap 973327 973356, overlap 973357 TCAAACACCACCAAC CCGGC CTCT GCCGC TTTTTGTGCGAATTG TERM 1134 973753 - 973733 - H 72 -8.2 -3.66803 | opp_overlap 973735 GTTGAACAGCCCAAA CGGCGTCG GACAG CTACGCCG GGATGTTCTGACGCA SDY_1027 974037 - 974246 + | hypothetical protein SDY_1028 974776 - 974255 - | IS911 ORF2 TERM 1135 974663 - 974674 + gT 77 -5.8 -4.63218 | opp_overlap 974659 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SDY_1029 975095 - 974745 - | IS911 ORF2 TERM 1136 975016 - 975036 + gr 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_1030 975424 - 975122 - | IS911 ORF1 TERM 1137 975851 - 975836 - R 72 -4.8 -4.65895 | TGTCTTACTGAAAAA TGAATA TAGA TATTCA TCTGGCGATTTGAGA TERM 1138 976014 - 976024 + r 79 -2.6 -5.4505 | AACGTTTTACGGATA TAAA AAG TTTA TTTTTTGTTAAGAGA SDY_1031 976452 - 976057 - | iso-IS1 ORF2 SDY_1032 976647 - 976859 + | hypothetical protein TERM 1139 977012 - 976980 - T 83 -13 -3.14602 | gap 1, opp_overlap 976978 976986, overlap 976978 GTTAGCTTATTAATA TACAGACACG-TCAT AGTG ATGAGCGTGTCTGTA GCTAGCTTGCGTTCA SDY_1033 977753 - 977103 - | hypothetical protein SDY_1034 978645 - 978010 - | putative sulfite oxidase subunit YedZ SDY_1035 979650 - 978646 - | putative sulfite oxidase subunit YedY SDY_1036 980271 - 979876 - | iso-IS1 ORF2 SDY_1038 980936 - 980610 - | hypothetical protein SDY_1037 980466 - 980765 + | hypothetical protein yedW 981069 - 981719 + | transcriptional regulatory protein YedW SDY_1040 982089 - 981694 - | iso-IS1 ORF2 SDY_1041 982284 - 982514 + | hypothetical protein TERM 1140 982553 - 982538 - g 70 -4 -4.62471 | TCCAATGTGGAAAAA TGTGAC TTTT ATCACA TAATAGTACTAAGTC SDY_1042 982511 - 982894 + | hypothetical protein SDY_1043 982934 - 983182 + | hypothetical protein yedJ 983190 - 983618 + | hypothetical protein TERM 1141 983656 - 983676 + F 83 -13.3 -3.15999 | AATTATGTTAACCTG TCGGCCATC TCA GATGGCCGG TTAAATCTATGCAGG dcm 983685 - 985103 + | DNA cytosine methylase vsr 985084 - 985554 + | DNA mismatch endonuclease, patch repair protein yedA 986463 - 985543 - | hypothetical protein yedI 986636 - 987553 + | hypothetical protein SDY_1049 987632 - 987814 + | hypothetical protein TERM 1142 987857 - 987829 - f 100 -17.5 -3.22491 | opp_overlap 987825 987834, overlap 987831 AAAGGGTATCATTAA GACCAGGCCGGAT CAC ATCCGGCCTGGTG TGCCAATGTCTGCAA TERM 1143 987855 - 987831 - f 100 -20.1 -3.17229 | opp_overlap 987825 987834, overlap 987829 AGGGTATCATTAAGA CCAGGCCGGAT CAC ATCCGGCCTGG TGTGCCAATGTCTGC TERM 1144 987834 - 987852 + F 86 -14.6 -2.63301 | opp_overlap 987831 987829, overlap 987825 GTATCATTAAGACCA GGCCGGAT CAC ATCCGGCC TGGTGTGCCAATGTC TERM 1145 989611 - 989623 + G 81 -9.1 -4.0641 | opp_overlap 989600 CAACTCCAGTCACTG GCCGA CCG TCGGC TTTATCTCGCTAAAC SDY_1050 988003 - 989679 + | hypothetical protein SDY_1051 990491 - 989676 - | mannosyl-3-phosphoglycerate phosphatase TERM 1146 990750 - 990772 + r 100 -14.9 -5.88565 | opp_overlap 990745 CTTAAGCAAGTTTCA TCCCGACCC CCTCA GGGTCGGGA TTTTTTTATTGTGCA SDY_1052 991031 - 990789 - | hypothetical protein dsrB 991165 - 991353 + | hypothetical protein TERM 1147 991361 - 991394 + F 85 -13.9 -3.09648 | opp_overlap 991355 991354, overlap 991363 CAGAGTAATCTTATT CAGCCTGACTGGTGG GAAA CCACCAGTCAGAATG TGTTAGCGTATGTTG TERM 1148 991363 - 991392 + F 73 -10.7 -3.10053 | opp_overlap 991355 991354, overlap 991361 GAGTAATCTTATTCA GCCTGACTGGTGG GAAA CCACCAGTCAGAA TGTGTTAGCGTATGT SDY_1054 991992 - 992387 + | iso-IS1 ORF2 insB 992839 - 992462 - | IS1 ORF2 insA 993159 - 992884 - | IS1 ORF1 SDY_1057 993888 - 993493 - | iso-IS1 ORF2 SDY_1058 994083 - 994295 + | hypothetical protein SDY_1059 994556 - 995281 + | putative integrase TERM 1149 995477 - 995463 - f 78 -5.8 -4.77986 | opp_overlap 995462 TCAAAGAGTTAAAAA TTTTTC TTG GAAAAA ATGTCTTAAAATCGT TERM 1150 995728 - 995760 + F 100 -8.4 -5.63236 | gap 1, opp_overlap 995728 AAGTTCACCAGCCAA CCGCAG-CACGTCCT GCAT ACGTCGTGTCTGCGG TTTTTCTTTTTCGCT SDY_1060 996338 - 996769 + | hypothetical protein TERM 1151 996809 - 996777 - f 86 -13.6 -3.16564 | gap 1, opp_overlap 996777 AAAAATAGCATCCAA CCGCAGCACGTTCTT GCTT AAGA-CGTGCTACGG TTTCCTTTACGATTT TERM 1152 996777 - 996809 + F 89 -11.4 -4.08919 | gap 1, opp_overlap 996777 AAAAATAGCATCCAA CCGCAGCACGTTCTT GCTT AAGA-CGTGCTACGG TTTCCTTTACGATTT SDY_1061 997432 - 997827 + | iso-IS1 ORF2 ipaH_3 998209 - 999369 + | invasion plasmid antigen SDY_1063 1000109 - 999324 - | IS600 ORF2 SDY_1064 1000552 - 1000250 - | IS600 ORF1 TERM 1153 1000832 - 1000809 - R 100 -13.8 -4.56597 | opp_overlap 1000821 1000822, overlap 1000810 CTGGCTCCGGAAAAA CGGAGGCCCG CCCC CGGGCCTCCC CGGATTCATCCGTTT TERM 1154 1000831 - 1000810 - R 100 -17.3 -3.33744 | opp_overlap 1000821 1000822, overlap 1000809 TGGCTCCGGAAAAAC GGAGGCCCG CCCC CGGGCCTCC CCGGATTCATCCGTT SDY_1065 1002129 - 1001080 - | putative tail fiber protein TERM 1155 1002171 - 1002153 - R 73 -7.4 -4.13995 | overlap 1002156 TCGCGATAAATTAAA TCAGGAAG AAC CTTCCGGA GAGACGGACCATTCA SDY_1066 1002641 - 1002153 - | putative tail fiber assembly protein SDY_1067 1002814 - 1002701 - | putative phage tail fiber protein SDY_1068 1002853 - 1003155 + | IS600 ORF1 SDY_1069 1003296 - 1004009 + | IS600 ORF2 SDY_1070 1004660 - 1004265 - | iso-IS1 ORF2 SDY_1072 1005276 - 1006112 + | hypothetical protein TERM 1156 1006378 - 1006404 + F 100 -15.9 -4.34402 | overlap 1006393 TTTTAACATCTTAAG CGCCCTCGACC TTTAT GGTTGAGGGCG TTTTGCTATGGCGCC SDY_1074 1006574 - 1006978 + | hypothetical protein SDY_1075 1007089 - 1007865 + | hypothetical protein SDY_1076 1007889 - 1008107 + | hypothetical protein SDY_1077 1008318 - 1008851 + | hypothetical protein SDY_1078 1009727 - 1008822 - | insertion element IS2 transposase InsD SDY_1079 1010050 - 1009685 - | insertion sequence 2 OrfA protein SDY_1080 1011220 - 1010435 - | hypothetical protein TERM 1157 1010936 - 1010952 + g 100 -6.5 -5.58454 | overlap 1010937 ATTGCTGACAGTGAC GTCGCTC CAG GAGCGAG TTTTTTTGCTCTGAA TERM 1158 1010937 - 1010951 + g 81 -10 -3.93988 | overlap 1010936 TTGCTGACAGTGACG TCGCTC CAG GAGCGA GTTTTTTTGCTCTGA SDY_1081 1011639 - 1011244 - | iso-IS1 ORF2 SDY_1082 1011834 - 1012043 + | hypothetical protein SDY_1083 1012478 - 1012083 - | iso-IS1 ORF2 TERM 1159 1012687 - 1012669 - R 72 -5.2 -4.63184 | opp_overlap 1012679, overlap 1012670 AAGTGAGCTGAAAAA CGCGGTGA CAG TCACGGCA GCGAAATCTGTCATG TERM 1160 1012843 - 1012875 + r 77 -7.1 -4.41047 | CATCACCGGCGCAAT TGTGTCACTGGAA TAGAGGT TTCTTGTGACACA TTTTAGTTCACCAAT yedK 1013573 - 1012902 - | hypothetical protein TERM 1161 1013641 - 1013685 + r 70 -8.8 -3.4285 | gap 2, opp_overlap 1013640 1013645 1013650, overlap 1013643 1013644 CTATGTGATACAAAG GTAA-CGAT-ATTCCCGCTGTG GGC CACAGCGGGAATGAGGGATTAC TTCTGAATTAAATAA TERM 1162 1013679 - 1013645 - R 79 -11.4 -3.35695 | opp_overlap 1013644 1013643 1013641, overlap 1013640 1013650 GTGATACAAAGGTAA CGATATTCCCGCTGTG GGC CACAGCGGGAATGAGG GATTACTTCTGAATT TERM 1163 1013674 - 1013650 - R 100 -18.7 -2.9585 | opp_overlap 1013644 1013643 1013641, overlap 1013645 1013640 ACAAAGGTAACGATA TTCCCGCTGTG GGC CACAGCGGGAA TGAGGGATTACTTCT yedF 1013915 - 1013682 - | hypothetical protein yedE 1015117 - 1013912 - | putative inner membrane protein TERM 1164 1014795 - 1014811 + g 72 -8.7 -3.72051 | ATAATGCGGATACGG CTACGCG GCA TGCGTAG TTTGACATTGTTGGC TERM 1165 1015706 - 1015691 - g 72 -8.2 -3.85698 | GCCGCGCTGGATAAA GCGCCG TTAC CGACGC CACTGCCGTAATGAA yedD 1015304 - 1015717 + | hypothetical protein TERM 1166 1015723 - 1015748 + T 74 -11.2 -2.79505 | gap 1, opp_overlap 1015723, overlap 1015722 1015725 ACTGCCGTAATGAAA TC-TCCCCGGC TTGCC GCCGGGGATGA ATTTAAATCACCTCT TERM 1167 1015748 - 1015723 - T 87 -11.2 -3.90291 | gap 1, opp_overlap 1015722 1015723 1015725 ACTGCCGTAATGAAA TC-TCCCCGGC TTGCC GCCGGGGATGA ATTTAAATCACCTCT TERM 1168 1015725 - 1015745 + T 83 -14 -2.66272 | opp_overlap 1015723, overlap 1015723 1015722 TGCCGTAATGAAATC TCCCCGGC TTGCC GCCGGGGA TGAATTTAAATCACC amyA 1017238 - 1015751 - | cytoplasmic alpha-amylase fliS 1018091 - 1017681 - | flagellar protein FliS fliD 1019513 - 1018116 - | flagellar capping protein TERM 1169 1020247 - 1020231 - R 75 -9.5 -3.53444 | TCAGGTCGGCGCAAA TGATGGT GAA ACCATCA CGATTGACCTGAAAA insB 1021511 - 1021134 - | IS1 ORF2 insA 1021831 - 1021556 - | IS1 ORF1 TERM 1170 1022395 - 1022411 + H 100 -15.1 -5.47159 | GTCAGCAACGTGCTT CCCCGCC ACC GGCGGGG TTTTTTCTGTTCGCA TERM 1171 1022581 - 1022593 + G 71 -9.1 -3.49653 | opp_overlap 1022580 1022579 TAATGGATAAACACT CGCTG TGG CAGCG TTATGTCCCGCTGGT TERM 1172 1023143 - 1023120 - g 72 -4.6 -4.59773 | CCGGAGCGCGAAAAA CTGGTATTAA CCCT CTATTACCAG GAAGAGCTGAATCTC fliA 1022538 - 1023257 + | flagellar biosynthesis sigma factor fliZ 1023267 - 1023854 + | protein FliZ TERM 1173 1024418 - 1024395 - g 79 -2.3 -5.22039 | CTGAAAGGCAAAAAA GTGGGTGTC GGTCTG GGCACCAAC TATGAAGAGTGGCTG TERM 1174 1024578 - 1024564 - g 84 -7.8 -4.63486 | ATCTGGTGAAGAAAA CCAACG ATA CGCTGG CAGTAACCGGTGAAG fliY 1023942 - 1024742 + | cystine transporter subunit TERM 1175 1024781 - 1024762 - f 84 -4.9 -5.39755 | opp_overlap 1024763, overlap 1024763 CATAATGACAAAAAA GGGCGCT TTCACT AGCGCCT TTTTTATTTACGTGT TERM 1176 1024780 - 1024763 - f 72 -8.4 -3.82226 | opp_overlap 1024763, overlap 1024762 ATAATGACAAAAAAG GGCGCT TTCACT AGCGCC TTTTTTATTTACGTG TERM 1177 1024763 - 1024780 + F 100 -8.4 -5.65927 | opp_overlap 1024763 1024762 ATAATGACAAAAAAG GGCGCT TTCACT AGCGCC TTTTTTATTTACGTG yedO 1024847 - 1025833 + | D-cysteine desulfhydrase TERM 1178 1025998 - 1026015 + G 81 -6.9 -4.67354 | TCGCCAATCTGGCCC GTGCGCT GGCT GGCGCGC TTTTATATCTCTATT TERM 1179 1026291 - 1026303 + G 72 -7.7 -3.88291 | TGTGGCGTTGCCGAC GCTGT CGA ACAGC TTTATCAGCCTGGTA TERM 1180 1026345 - 1026322 - g 70 -6.8 -4.08945 | gap 1, overlap 1026326 1026327 1026344 ATCAGCCTGGTAAAA GATACGTCGCT GGC AGCGACA-ATC CAGGTGCCGGAGCTG yecS 1025848 - 1026516 + | putative transport system permease protein yecC 1026513 - 1027265 + | putative amino-acid ABC transporter ATP-binding protein YecC TERM 1181 1027306 - 1027276 - f 89 -5.3 -5.70522 | gap 1, opp_overlap 1027300 1027301, overlap 1027277 1027279 AATAATAAGAAAAAA TCAGCCCCGAC-GA TTCA CCTGTCGGGGCGGG ACGCCATTTCAAGCC TERM 1182 1027305 - 1027277 - f 77 -8.8 -3.98653 | gap 1, opp_overlap 1027300 1027301, overlap 1027276 1027279 ATAATAAGAAAAAAT CAGCCCCGAC-GA TTCA CCTGTCGGGGCGG GACGCCATTTCAAGC TERM 1183 1027303 - 1027279 - f 75 -10 -3.54636 | gap 1, opp_overlap 1027300 1027301, overlap 1027277 1027276 AATAAGAAAAAATCA GCCCCGAC-GA TTCA CCTGTCGGGGC GGGACGCCATTTCAA SDY_1102 1028407 - 1028802 + | iso-IS1 ORF2 TERM 1184 1029020 - 1029056 + T 81 -12.4 -3.14051 | opp_overlap 1029025, overlap 1029025 CTGCGTGCCAGATGC AAAAACCGGCTGAAAG GCACG CTATCAGCCGGTTTTA TATTACTGACGGTAG TERM 1185 1029025 - 1029051 + T 100 -12.3 -4.70583 | opp_overlap 1029025, overlap 1029020 TGCCAGATGCAAAAA CCGGCTGAAAG GCACG CTATCAGCCGG TTTTATATTACTGAC TERM 1186 1029051 - 1029025 - T 100 -12.3 -4.70659 | opp_overlap 1029025 1029020 TGCCAGATGCAAAAA CCGGCTGAAAG GCACG CTATCAGCCGG TTTTATATTACTGAC yecF 1029283 - 1029059 - | hypothetical protein TERM 1187 1029131 - 1029142 + g 81 -5.8 -4.77986 | GGTTTCGTCTTCGAT CAGC GCAA GCTG TTTTTCCATCTTTAA TERM 1188 1029492 - 1029503 + H 73 -4.4 -4.80167 | ATTAATGTTACATAT TCAG CGGG CTGA TTTTCATTTTTGCTG uvrY 1029742 - 1030398 + | response regulator uvrC 1030395 - 1032122 + | excinuclease ABC subunit C pgsA 1032286 - 1032834 + | phosphatidylglycerophosphate synthetase TERM 1189 1033028 - 1033012 - f 73 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 1190 1033092 - 1033070 - f 73 -7.7 -4.13767 | CGCTCCAGTTTAAAA GACATCGGC GTCAA GCGGATGTC TGGCTGAAAGGCCTG TERM 1191 1033247 - 1033227 - f 72 -10.5 -2.89742 | overlap 1033230 TGGAATCGGTAGACA CAAGGGATT TAA AATCCCTCG GCGTTCGCGCTGTGC TERM 1192 1033335 - 1033348 + F 100 -8.1 -5.64274 | opp_overlap 1033335 AGCAGTGTCGTGAAA CCACC TTCG GGTGG TTTTTTTGTGCCTGC TERM 1193 1033430 - 1033418 - f 78 -6.3 -4.69027 | AAAGCCACTCAAAAA GTATC TCT GATAC GGACCGGCATGTAAG yecA 1033484 - 1034149 + | hypothetical protein TERM 1194 1034188 - 1034159 - T 71 -7.9 -3.8646 | CATTAAGAAGTCAAA TTGGGTGTCAG CGTTAATT CTGGCACCCAA TAAGGAATTTGAGGC tyrP 1035422 - 1034211 - | tyrosine-specific transport system TERM 1195 1034461 - 1034451 - G 72 -8.2 -3.7229 | overlap 1034452 ATAAAACAGTGCAAA CGCC AAC GGCG GCAGAAAGGTAATTG TERM 1196 1035409 - 1035398 - G 79 -4.4 -4.91109 | opp_overlap 1035398 CCGCCACGATAAAAA CACT TCCC AGTG TTCTGTTTTTCACGC yecH 1035614 - 1035853 + | hypothetical protein TERM 1197 1035883 - 1035861 - T 82 -11.2 -3.61178 | overlap 1035862 GTCACTGATTTGAAA CGGCGGCAGA AAA CCTGCCGCCT GAGAGCATTAGTTTT TERM 1198 1035882 - 1035862 - T 87 -14.7 -2.76492 | overlap 1035861 TCACTGATTTGAAAC GGCGGCAGA AAA CCTGCCGCC TGAGAGCATTAGTTT ftn 1036388 - 1035891 - | ferritin TERM 1199 1036522 - 1036555 + r 73 -9.7 -3.34398 | opp_overlap 1036531, overlap 1036520 1036523 GCATTACCGCTATTT CTTTAATCAGCGAAG ATCC CCTCGCTGATTAAAA TATTTAGAGAAAGAC TERM 1200 1036523 - 1036554 + r 81 -13.2 -2.60496 | opp_overlap 1036531, overlap 1036522 1036520 CATTACCGCTATTTC TTTAATCAGCGAAG ATCC CCTCGCTGATTAAA ATATTTAGAGAAAGA SDY_1114 1036882 - 1036559 - | hypothetical protein TERM 1201 1036965 - 1036953 - R 72 -9.1 -3.64488 | opp_overlap 1036952 1036949 1036940 1036953, overlap 1036951 AATGGCCGGAAAAGA CGCCT GGC AGGCG CTATTTCTTGCCATC SDY_1115 1037488 - 1037093 - | iso-IS1 ORF2 TERM 1202 1038691 - 1038668 - g 70 -5.2 -4.41633 | GATCTGGAAAAAGAA CAGCAGCATG ATGG CCTGTTGCTG CAAACCATTCTTGAT yecI 1038290 - 1038793 + | ferritin-like protein TERM 1203 1038796 - 1038828 + T 78 -6.2 -4.56597 | opp_overlap 1038799 1038801, overlap 1038797 CCAGCTGCATTGATC ATACATCGGCGCTA ATGCA TTGCGCCGATGAAG TTTTTGAGAAACCGC TERM 1204 1038797 - 1038827 + T 73 -9.7 -3.33744 | opp_overlap 1038799 1038801, overlap 1038796 CAGCTGCATTGATCA TACATCGGCGCTA ATGCA TTGCGCCGATGAA GTTTTTGAGAAACCG TERM 1205 1038825 - 1038799 - T 79 -12.3 -2.80816 | opp_overlap 1038797 1038796, overlap 1038801 GCTGCATTGATCATA CATCGGCGCTA ATGCA TTGCGCCGATG AAGTTTTTGAGAAAC TERM 1206 1038867 - 1038840 - T 80 -9.9 -3.86822 | opp_overlap 1038840 GAAGTTTTTGAGAAA CCGCTGCCTCA TCTTTT TGAAGCAACGG TTTTTTAATGGGATT TERM 1207 1038840 - 1038867 + T 82 -5.5 -5.16237 | opp_overlap 1038840 GAAGTTTTTGAGAAA CCGCTGCCTCA TCTTTT TGAAGCAACGG TTTTTTAATGGGATT SDY_1117 1039123 - 1038872 - | hypothetical protein TERM 1208 1039210 - 1039237 + rH 73 -10 -3.30007 | opp_overlap 1039209 1039217, overlap 1039217 CCGTCATCAGGACAC AAAAAAACCTGC CGGA GCAGGTTTTTTG TTATCGGAACATATT TERM 1209 1039217 - 1039230 + rH 100 -8.1 -5.55769 | opp_overlap 1039209 1039217, overlap 1039210 CAGGACACAAAAAAA CCTGC CGGA GCAGG TTTTTTGTTATCGGA TERM 1210 1039230 - 1039217 - RH 100 -8.1 -5.74122 | opp_overlap 1039217 1039210, overlap 1039209 CAGGACACAAAAAAA CCTGC CGGA GCAGG TTTTTTGTTATCGGA SDY_1119 1039807 - 1039412 - | iso-IS1 ORF2 SDY_1118 1039778 - 1040167 + | hypothetical protein TERM 1211 1040168 - 1040180 + FH 78 -6.3 -4.62069 | opp_overlap 1040168 AGAGGCATCATCTAA CGAAT GTC ATTCG TTTTTGCCCTACACA araF 1040222 - 1041211 + | L-arabinose-binding periplasmic protein TERM 1212 1041251 - 1041225 - f 93 -10.8 -4.57341 | overlap 1041226 1041227 AATTTGCCGGAAAAA TTCCCCTCTGCA TGA TGCAGAGGGGGT GTGAACGACCAGTGA TERM 1213 1041250 - 1041226 - f 93 -14.3 -3.33922 | overlap 1041225 1041227 ATTTGCCGGAAAAAT TCCCCTCTGCA TGA TGCAGAGGGGG TGTGAACGACCAGTG TERM 1214 1041249 - 1041227 - f 100 -17.8 -2.60032 | overlap 1041226 1041225 TTTGCCGGAAAAATT CCCCTCTGCA TGA TGCAGAGGGG GTGTGAACGACCAGT araG 1041281 - 1042795 + | L-arabinose transporter ATP-binding protein araH 1042807 - 1043796 + | L-arabinose transporter permease protein SDY_1123 1044340 - 1044642 + | IS600 ORF1 SDY_1124 1044783 - 1045496 + | IS600 ORF2 TERM 1215 1045756 - 1045742 - T 79 -2.7 -5.31275 | CGGGATTAGAAAAAA CAGCC CTGAC GGCAG CATTCACCCGGACGG TERM 1216 1045821 - 1045803 - T 72 -6 -4.42386 | opp_overlap 1045807, overlap 1045807 GTCGCAGCCAGAAAA TTAACAGG TAT CCTGTTCA GTGAAAACCCACCAA TERM 1217 1046137 - 1046111 - T 100 -11 -5.64006 | ATGCAATGAAAAAAA GACCGAATAC GATTCCT GTATTCGGTC CAGGGAAATGGCTCT TERM 1218 1046300 - 1046327 + T 95 -2.8 -6.09888 | gap 2, opp_overlap 1046300 TTAAATGTTAAAAAC CGCC-C-GTTCT GGTGAA AGAACTGAGGCG TTTTTTTTATTGGAA SDY_1125 1046706 - 1046365 - | hypothetical protein SDY_1126 1047387 - 1046719 - | putative resistance protein TERM 1219 1047573 - 1047563 - R 71 -6.8 -4.02132 | GGTGAAATGGATAAA TCGC AGC GCGA TCCAGGTAAACGCCA SDY_1127 1047970 - 1047596 - | hypothetical protein holE 1048109 - 1048339 + | DNA polymerase III subunit theta SDY_1129 1048441 - 1049097 + | hypothetical protein TERM 1220 1049160 - 1049146 - g 70 -7.1 -4.1399 | overlap 1049142 TTATCGATACAGAAA CCTGC GGTTT GCAGG GAGGGATCGTTGAGA SDY_1130 1049121 - 1049783 + | exodeoxyribonuclease X ptrB 1051840 - 1049780 - | protease 2 TERM 1221 1051074 - 1051058 - G 71 -2.2 -4.96501 | gap 1, opp_overlap 1051059, overlap 1051059 CGGCAGAAAAACAAA CGGCTCG GCAT CG-GCCA TTTCCGCGTCCAGCA TERM 1222 1051476 - 1051466 - G 75 -5.4 -4.67982 | opp_overlap 1051474 GCCCATCGAATAAAA CTCA CTA TGAG CCGCGCGCTTGTTGG yebE 1052708 - 1052049 - | hypothetical protein TERM 1223 1052455 - 1052467 + g 74 -3.3 -4.88684 | overlap 1052455 TGCGGTTCGTCCTGA TGCGC CGC GCGAA TTTTATCTTTGTATT yebF 1053400 - 1053032 - | hypothetical protein TERM 1224 1053215 - 1053227 + g 75 -4.7 -4.73613 | overlap 1053216 TTGATCATCTGCCCA GCGCG CCA CGCGA TTTTGTTGATAATCA yebG 1053745 - 1053455 - | DNA damage-inducible protein YebG purT 1053879 - 1055057 + | phosphoribosylglycinamide formyltransferase 2 TERM 1225 1055083 - 1055103 + T 100 -15.5 -4.4267 | opp_overlap 1055083 AAAACGCTACAAAAA TGCCCGATC CTC GATCGGGCA TTTTAACTTTTACAG TERM 1226 1055103 - 1055083 - T 100 -15.5 -4.90296 | opp_overlap 1055083 AAAACGCTACAAAAA TGCCCGATC CTC GATCGGGCA TTTTAACTTTTACAG eda 1055754 - 1055113 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 1227 1055709 - 1055697 - G 76 -9.1 -3.84406 | opp_overlap 1055705 1055706, overlap 1055706 TTTTTACCACAATAA CCGGT ACA ACCGG GCCGGTGGTCAGGAT TERM 1228 1055815 - 1055832 + r 82 -7.7 -4.56597 | GATACAGGTTGCTCC CTGTTCG GCAC CGGACAG TTTTTCACGCAAGGC edd 1057602 - 1055791 - | phosphogluconate dehydratase TERM 1229 1057757 - 1057732 - R 100 -11.2 -5.80364 | gap 1 AGTGTAATAAAAAAA GCCTCGTG-GG TGAAT CCGCACGAGGC CTGAAAGTGTAAAAA zwf 1059312 - 1057837 - | glucose-6-phosphate 1-dehydrogenase TERM 1230 1059272 - 1059238 - G 89 -13.6 -3.22388 | overlap 1059242 CAGGGAAGGCAGCAA TTTACGACGCGCAAGG TCG CCTTTCGCGCCGAAAA TGACCAGGTCACAGG TERM 1231 1059268 - 1059242 - G 90 -14.4 -2.57721 | overlap 1059238 GAAGGCAGCAATTTA CGACGCGCAAGG TCG CCTTTCGCGCCG AAAATGACCAGGTCA TERM 1232 1059684 - 1059669 - g 81 -4.7 -5.02476 | overlap 1059658 ATATGCTGGAAAAAA TCCAG TCTCAG CTGGA ACATTTGAGCAAATC SDY_1139 1059650 - 1060057 + | hypothetical protein SDY_1140 1060087 - 1060518 + | hypothetical protein TERM 1233 1060531 - 1060505 - f 79 -11.6 -3.19371 | opp_overlap 1060505, overlap 1060491 1060521 AGTTACTTAATTTAA GTGACGATCGCT AAA AGCGACTGTCAC TGTCCTAATCTTATA TERM 1234 1060505 - 1060531 + F 77 -11.6 -2.87146 | opp_overlap 1060491 1060505 1060521 AGTTACTTAATTTAA GTGACGATCGCT AAA AGCGACTGTCAC TGTCCTAATCTTATA TERM 1235 1060984 - 1060973 - g 95 -5.8 -5.38054 | GGCGACAAAGAAAAA GTCG GTAT CGAC TACAAAGGCCTGCCT pykA 1060646 - 1062088 + | pyruvate kinase TERM 1236 1062134 - 1062089 - T 77 -11.2 -3.27994 | gap 2, opp_overlap 1062092, overlap 1062092 TTAACGGTAGAGTAA GTAC-GTTG-CCGGATGCGGCG AAAA CGCCACATCCGGCCTACAGTTC AATGATAGTTCAACA TERM 1237 1062130 - 1062092 - T 84 -13.9 -2.81725 | gap 1, opp_overlap 1062092, overlap 1062089 ACGGTAGAGTAAGTA CGTTG-CCGGATGCGGCG AAAA CGCCACATCCGGCCTACA GTTCAATGATAGTTC TERM 1238 1062196 - 1062214 + T 100 -10.3 -5.68438 | TATCATCAGGCGAAG GCCTCTC CTCGC GAGAGGC TTTTTTATTTGATGG msbB 1063190 - 1062219 - | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 1239 1062701 - 1062689 - G 79 -4.7 -4.9755 | opp_overlap 1062689 AGACATAATCAAAAA CCGGG TTG CCCTG ATTATGGAACATCGC TERM 1240 1063293 - 1063271 - R 100 -10.6 -5.99154 | CACCAAATAAAAAAA GCCGGTAC TGACTGC GTACCGGC TGCGAATGGATGTTA yebA 1064632 - 1063310 - | hypothetical protein TERM 1241 1064011 - 1064027 + g 81 -10.1 -3.87815 | opp_overlap 1064022, overlap 1063998 CTGCGCTCACTTCGG CGCTGGT TAA ACCGGCG TTTCTGGCGCTGGCA znuA 1065580 - 1064648 - | high-affinity zinc transporter periplasmic component TERM 1242 1064924 - 1064935 + g 72 -4.4 -4.59773 | ATGACCAAGCGGTGT CAGT CCGA ACTG TTTTTCGAAATAGCC TERM 1243 1065176 - 1065189 + g 77 -3.1 -5.03715 | overlap 1065174 GAAATCTCCGTGATG GTGAT CTTC GTCAC TTTTTTCCGCGTGGT TERM 1244 1065289 - 1065307 + g 75 -5.3 -4.65895 | TTACCTGCTTCGCTT CTGGTAA TTTGC TTACCGG TTTTTGCATAAACGC znuC 1065659 - 1066414 + | high-affinity zinc transporter ATPase znuB 1066411 - 1067196 + | high-affinity zinc transporter membrane component ruvB 1068353 - 1067343 - | Holliday junction DNA helicase B ruvA 1068973 - 1068362 - | Holliday junction DNA helicase motor protein TERM 1245 1068477 - 1068487 + g 74 -8.2 -3.95324 | CCCAGCGCCACCAGC GCGG CAA CCGC TTCTTGTTCAGCATC TERM 1246 1069042 - 1069023 - H 93 -6.4 -5.67063 | overlap 1069024 TGTATGATAAAAAAA TGCTGGAT AGAT ATCCAGCG AAGGATGAAGAAAAC TERM 1247 1069041 - 1069024 - H 80 -9.9 -3.99153 | overlap 1069023 GTATGATAAAAAAAT GCTGGAT AGAT ATCCAGC GAAGGATGAAGAAAA TERM 1248 1069205 - 1069195 - H 72 -2.6 -5.00616 | opp_overlap 1069195 CGCCTCCTGAAAAAA TAAA TTT TTTA TGCTATTACGTATAT TERM 1249 1069530 - 1069518 - g 85 -3.4 -5.35721 | ACAGAACAACAAAAA CAAC GAATT GTTG AACAGGTTCCCTCCC TERM 1250 1069844 - 1069819 - g 77 -10.4 -3.61178 | opp_overlap 1069835 CGGAGGTAGTGGAAA CGCCTCAGCC GGAACT GACCGAGGCG GTATAACTTAACGCA yebB 1069248 - 1069850 + | hypothetical protein ruvC 1070373 - 1069852 - | Holliday junction resolvase TERM 1251 1069986 - 1070015 + g 86 -7.1 -5.02074 | opp_overlap 1069990 TAGCGGGCAGTTTCA GCAAGGTGCGG ACCATATG CTGCACCTGGC TTTTTTCGGCACTAC yebC 1071148 - 1070408 - | hypothetical protein ntpA 1071629 - 1071177 - | dATP pyrophosphohydrolase aspS 1073519 - 1071747 - | aspartyl-tRNA synthetase SDY_1154 1073829 - 1074083 + | hypothetical protein TERM 1252 1074438 - 1074413 - g 71 -3.3 -4.74518 | gap 1, opp_overlap 1074421, overlap 1074414 1074428 AACGACGAAAACAAA CTCAGGTC-GCT AAT ATCTGACCTGAA ACAACATGGTCAGAT TERM 1253 1075418 - 1075446 + G 71 -3.2 -4.82901 | AGACGACGCTGCGAC GTTCTGTTCGC-CA TGA TGCGCGA-CGGGAC TTTTTATACCCCGCA SDY_1155 1074275 - 1075471 + | ISSfl2 ORF insA 1075974 - 1076249 + | IS1 ORF1 insB 1076271 - 1076669 + | IS1 ORF2 SDY_1158 1077771 - 1078073 + | IS911 ORF1 TERM 1254 1078179 - 1078159 - gf 72 -4.6 -4.65838 | CAGATACTGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT SDY_1159 1078100 - 1078450 + | IS911 ORF2 TERM 1255 1078532 - 1078521 - gT 77 -5.8 -4.63218 | opp_overlap 1078526 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SDY_1160 1078419 - 1078940 + | IS911 ORF2 insB 1079918 - 1079466 - | IS1 ORF2 SDY_1162 1080808 - 1079903 - | insertion element IS2 transposase InsD SDY_1163 1081131 - 1080766 - | insertion sequence 2 OrfA protein insA 1081499 - 1081224 - | IS1 ORF1 SDY_1165 1082255 - 1081860 - | iso-IS1 ORF2 SDY_1166 1083207 - 1082590 - | hypothetical protein TERM 1256 1083524 - 1083500 - g 72 -10 -3.31915 | opp_overlap 1083499 1083500, overlap 1083498 1083497 TGGTTACAAAAATTA GCGCAGTGGC ATCAG ACCACTACGC CTTATCTTTTTTTAC SDY_1167 1083311 - 1083658 + | hypothetical protein yecN 1083711 - 1084106 + | hypothetical protein yecO 1084147 - 1084890 + | hypothetical protein yecP 1084887 - 1085858 + | putative enzyme TERM 1257 1085995 - 1086012 + T 85 -14.1 -3.0976 | opp_overlap 1085991 GTTTGCATAACCTCT GCGCCCG TTTC CGGGCGC TATTCACGTCTTACG bisZ 1088383 - 1086023 - | biotin sulfoxide reductase 2 TERM 1258 1088317 - 1088333 + g 71 -9.4 -3.48105 | overlap 1088316 TCACCACCAGCGCTC CAGCGG CAATA CCGCTG TGTTTAATAAATTCA SDY_1172 1089111 - 1088896 - | iso-IS1 ORF2 SDY_1173 1089290 - 1089108 - | iso-IS1 ORF2 SDY_1174 1090439 - 1090044 - | iso-IS1 ORF2 SDY_1176 1091740 - 1091345 - | iso-IS1 ORF2 SDY_1177 1091935 - 1092138 + | hypothetical protein TERM 1259 1092151 - 1092127 - T 100 -10 -5.64274 | TCAGGGATAAAAAAA GGCCCCTG TTGAAATTG CAGGGGCC TGGTACGAGCAAGCA cutC 1092945 - 1092199 - | copper homeostasis protein CutC yecM 1093531 - 1092959 - | hypothetical protein TERM 1260 1093356 - 1093376 + g 78 -8.9 -4.25104 | opp_overlap 1093350 TGTTCAAACCCGCGA CGCCAGCGT TCA GCGGTGGCG TTTTGATGGCAACGC TERM 1261 1093700 - 1093718 + H 77 -11 -3.20382 | ATTTCTTTAACTGGT GCGGGCAA TTT TTGCTCGC TTCATCAATGTAAGG TERM 1262 1093801 - 1093822 + G 70 -10.1 -3.18264 | ATTGCGGCAGGCGCG CCTGCGGAT TGCG AACCGCAGG TTCGTCAGTCAGCAA TERM 1263 1095061 - 1095051 - g 70 -4.6 -4.57569 | overlap 1095033 GGATCTCTCCAAAAA CCGC ACC ACGG ACTACATCTTCGACT argS 1093741 - 1095474 + | arginyl-tRNA synthetase TERM 1264 1095496 - 1095521 + F 100 -9.8 -5.46657 | gap 1, opp_overlap 1095496 TTTCGTGAGAGTGAA GCCTGATCAGG GTTAG CC-GATCAGGC TTTTTTATTGCCATC TERM 1265 1095521 - 1095496 - f 77 -11.2 -3.12351 | opp_overlap 1095496 TTTCGTGAGAGTGAA GCCTGATCAG GGTTAG CCGATCAGGC TTTTTTATTGCCATC insA 1095709 - 1095984 + | IS1 ORF1 insB 1096029 - 1096406 + | IS1 ORF2 TERM 1266 1096929 - 1096983 + T 73 -11.3 -2.63476 | gap 2, overlap 1096928 1096927 ATAATTCACATATTT TTGGCATGTTTTGTTGCAATCTATT CCTGATA AAT-GATTGCAACAAAACAT-CCAG CCTTTTTCACTGAGT flhE 1097430 - 1097038 - | flagellar protein TERM 1267 1097269 - 1097247 - G 76 -10.6 -3.28712 | GTGTCGGGCCGATAA GCTGATAACG CCA CGCTACCAGC GTCATCAATCCTGAA SDY_1185 1099440 - 1099045 - | iso-IS1 ORF2 SDY_1186 1099853 - 1100155 + | IS600 ORF1 SDY_1187 1100296 - 1101009 + | IS600 ORF2 TERM 1268 1101000 - 1100989 - T 79 -4.4 -5.14563 | GCCTTCAGGAAAAAA CATC ATCA GATG GCTGCTTGAAAAAAG TERM 1269 1101441 - 1101453 + T 71 -6.9 -4.11216 | overlap 1101442 ATATAGGGTTCGACA TCGGC ACT GCCGG TTTTAAACATCGGGC motA 1102824 - 1101937 - | flagellar motor protein MotA TERM 1270 1102111 - 1102089 - G 74 -7.6 -4.0162 | opp_overlap 1102088 1102086 1102101 CGTTCAGATTAGAAA GCAGTGTGAC TTT GACGCACTGC ATCATTTTGCTGGTT TERM 1271 1102208 - 1102188 - G 70 -3.9 -4.72029 | CGTAAGCCAATAAAA TGCCGAGGA AAG TCCCCACCA TCGCATGTGCGATAA TERM 1272 1102640 - 1102659 + g 72 -8.6 -3.82097 | gap 1, opp_overlap 1102639 1102640 CGACGAAACAGCAAC GGCAGCGCT TTC AGCG-TGCC TTTAATCGCTTTGCC TERM 1273 1102923 - 1102900 - R 100 -12.5 -5.40474 | ATTGGGGCAAAAAAA GCAGCGGTA CGTCGT TACCGCTGC TGGAATGTTGCGCCA flhC 1103495 - 1102950 - | transcriptional activator FlhC flhD 1103857 - 1103498 - | transcriptional activator FlhD TERM 1274 1104127 - 1104108 - H 72 -9.4 -3.63515 | TGCGATTTTCAATAA TGTGTGAT GCAG ATCACACA AAACACTCAATTACT TERM 1275 1104970 - 1105003 + G 85 -14.1 -2.75382 | gap 1, opp_overlap 1104968, overlap 1104967 AATCACAATCACAGT TTCTTTTCGC-GAGCA TCC TGCTCGGCGAAAAGAG TGATTGCCTCAAGTG yecG 1104628 - 1105056 + | universal stress protein UspC otsA 1106487 - 1105063 - | trehalose-6-phosphate synthase TERM 1276 1106696 - 1106683 - R 75 -9.5 -3.5241 | overlap 1106670 1106681 CATCGCCCAGAAATA CGGGC GTTC GCCCG ATAAAGGGAGCTTCC SDY_1195 1107867 - 1107028 - | IS911 ORF2 TERM 1277 1107436 - 1107447 + g 77 -5.8 -4.63218 | opp_overlap 1107432 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG TERM 1278 1107788 - 1107808 + g 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_1196 1108220 - 1107894 - | IS911 ORF1 SDY_1197 1108963 - 1108193 - | IS600 ORF2 SDY_1198 1109406 - 1109104 - | IS600 ORF1 insA 1109483 - 1109758 + | IS1 ORF1 insB 1109803 - 1110180 + | IS1 ORF2 SDY_1201 1111027 - 1111422 + | iso-IS1 ORF2 SDY_1202 1111815 - 1112834 + | hypothetical protein SDY_1203 1113204 - 1112809 - | iso-IS1 ORF2 TERM 1279 1114278 - 1114268 - g 72 -6.8 -4.27316 | TGGTGCAATGCAAAA CCTG GGT CAGG ACTCCGCTACAAAGG TERM 1280 1114432 - 1114448 + G 81 -12.3 -3.14132 | CATCGGTCAGTGGCG CGACAGG AAG CCTGTCG TTAATGACGCCACGG ypjA 1113426 - 1116020 + | putative ATP-binding component of a transport system TERM 1281 1116051 - 1116036 - T 84 -10.4 -3.85704 | opp_overlap 1116036 CCATCAACGATTAAA CTGCGC TTCG GCGCAG TTTTCGTTTACAGGA TERM 1282 1116036 - 1116051 + T 93 -10.4 -4.54727 | opp_overlap 1116036 CCATCAACGATTAAA CTGCGC TTCG GCGCAG TTTTCGTTTACAGGA TERM 1283 1116115 - 1116098 - T 84 -4.7 -5.40072 | overlap 1116099 TCTGGGGTAAAAAAA TCCGCCA GTTA CGGCGGG AAACCTCATCCTATG TERM 1284 1116114 - 1116099 - T 72 -8.2 -3.83561 | overlap 1116098 CTGGGGTAAAAAAAT CCGCCA GTTA CGGCGG GAAACCTCATCCTAT TERM 1285 1116366 - 1116339 - T 100 -15 -4.76041 | overlap 1116340 1116355 GAGAGGGATGAAAAA CTCAAGGCAGAG ATGA CTCTGCCTTGAA GAGAAATGCGCTTTT TERM 1286 1116365 - 1116340 - T 100 -16.3 -3.44902 | overlap 1116339 1116355 AGAGGGATGAAAAAC TCAAGGCAGAG ATGA CTCTGCCTTGA AGAGAAATGCGCTTT minE 1116657 - 1116391 - | cell division topological specificity factor MinE minD 1117473 - 1116661 - | cell division inhibitor MinD minC 1118192 - 1117497 - | septum formation inhibitor SDY_1208 1119227 - 1118832 - | iso-IS1 ORF2 ycgJ 1119754 - 1120038 + | hypothetical protein TERM 1287 1120132 - 1120146 + T 73 -11.4 -2.56046 | overlap 1120124 1120123 1120118 CGTTAACGTTTATGA CGGGGA GAG TCCCCG TCGGTTGACATTTAC ycgK 1120559 - 1120158 - | hypothetical protein TERM 1288 1120726 - 1120712 - H 75 -6.4 -4.50627 | opp_overlap 1120712, overlap 1120708 CATGGACTAAACAAA CCGTAG AAT CTACAG TTGGCTGGCTTGTGG ycgL 1120766 - 1121092 + | hypothetical protein SDY_1212 1121164 - 1121823 + | hypothetical protein ycgN 1121915 - 1122361 + | hypothetical protein insA 1122444 - 1122719 + | IS1 ORF1 insB 1122764 - 1123141 + | IS1 ORF2 SDY_1216 1123671 - 1124066 + | iso-IS1 ORF2 SDY_1217 1124327 - 1124118 - | hypothetical protein SDY_1218 1124522 - 1124917 + | iso-IS1 ORF2 umuD 1125536 - 1125955 + | DNA polymerase V subunit UmuD umuC 1125955 - 1127214 + | DNA polymerase V subunit UmuC TERM 1289 1127251 - 1127234 - T 100 -12.7 -5.14965 | AGCGGCAGGAAAAAA GCGCTCC CGCA GGAGCGC CGAATGGATTAGCGA dsbB 1127790 - 1127260 - | disulfide bond formation protein B TERM 1290 1127417 - 1127384 - G 81 -4.5 -5.1287 | gap 1, overlap 1127386 TCCAGACCTAAAAAA TC-CCACTGACGCTCG GCG CAATCGCCAGAGGCGA CAAACACTTGCGGCA TERM 1291 1127902 - 1127929 + r 79 -9.8 -3.79113 | opp_overlap 1127900 1127906, overlap 1127906 TATCGGGCGAAAAGG CAAACCGGGCAT TTAT ATGCCCGGTAAG TTGTTATCAAAGCGT TERM 1292 1127906 - 1127925 + r 83 -13.6 -2.68806 | opp_overlap 1127900 1127906, overlap 1127902 GGGCGAAAAGGCAAA CCGGGCAT TTAT ATGCCCGG TAAGTTGTTATCAAA TERM 1293 1127925 - 1127906 - R 100 -13.6 -3.92659 | opp_overlap 1127906 1127902, overlap 1127900 GGGCGAAAAGGCAAA CCGGGCAT TTAT ATGCCCGG TAAGTTGTTATCAAA nhaB 1129477 - 1127936 - | sodium/proton antiporter TERM 1294 1128419 - 1128401 - G 80 -5.3 -4.88736 | gap 1 GACTACCGAGAAAAA CACCGTCA ACAG TG-CGGTG AATGGCAGAGATTCG fadR 1129699 - 1130418 + | fatty acid metabolism regulator TERM 1295 1130441 - 1130456 + T 100 -10.4 -5.80727 | opp_overlap 1130441 CGTTTAAAAAACAAA CCCCTC AAAC GAGGGG TTTTTTGTTGTTTTT TERM 1296 1130456 - 1130441 - T 100 -10.4 -5.04249 | opp_overlap 1130441 CGTTTAAAAAACAAA CCCCTC AAAC GAGGGG TTTTTTGTTGTTTTT ycgB 1132002 - 1130470 - | hypothetical protein TERM 1297 1131413 - 1131425 + g 84 -4.1 -5.25803 | TGCCGGGCTTTCTCT TCTTG CAG CGAGA TTTTTTGTGGGCGTT dadA 1132332 - 1133630 + | D-amino acid dehydrogenase small subunit TERM 1298 1134816 - 1134842 + T 90 -13.2 -3.53224 | opp_overlap 1134818 AGCCATTGCCCATGA TAGTGTCCATTA AAA TGATGGACACTA TTTCCCCGGAACCTG SDY_1228 1136010 - 1134877 - | hypothetical protein TERM 1299 1136235 - 1136251 + H 70 -10.1 -3.01924 | opp_overlap 1136226 1136225, overlap 1136237 GAAGAGCCGCCTTGG CGGGCGT CGT ACGCCTG TGTTAACGGAAGATG SDY_1229 1136572 - 1136859 + | hypothetical protein SDY_1230 1138698 - 1136962 - | potassium/proton antiporter ldcA 1139707 - 1138793 - | L,D-carboxypeptidase A mltE 1139693 - 1140418 + | murein transglycosylase E ycgR 1141154 - 1140420 - | hypothetical protein ymgE 1141355 - 1141609 + | hypothetical protein TERM 1300 1141652 - 1141621 - T 70 -9.4 -3.33583 | opp_overlap 1141622, overlap 1141622 ATAAGATTTTCATAA GGCGGATAGCGATA CAGA TGCCGCTATCCGCT TTCACATCAGAACGT TERM 1301 1141622 - 1141651 + T 90 -12.9 -3.59979 | opp_overlap 1141621 1141622 TAAGATTTTCATAAG GCGGATAGCGATA CAGA TGCCGCTATCCGC TTTCACATCAGAACG TERM 1302 1141651 - 1141622 - T 81 -12.9 -2.59668 | opp_overlap 1141622, overlap 1141621 TAAGATTTTCATAAG GCGGATAGCGATA CAGA TGCCGCTATCCGC TTTCACATCAGAACG prrA 1143629 - 1141659 - | putative outer membrane receptor TERM 1303 1141804 - 1141823 + g 71 -2.7 -4.83615 | overlap 1141808 TCGGCTCGAATGTGG GTCACCG CAAAAC CGGCGGC TTTTTGTGAACCGTC TERM 1304 1142675 - 1142687 + g 100 -4.7 -5.93252 | opp_overlap 1142675 TGTAATCGGAATAAT GGCTG TAG CTGCC TTTTTTATTTTTCAA TERM 1305 1142821 - 1142849 + g 72 -4.6 -4.59511 | gap 1 TAAAAACTTTCTTTG TCATACT-CTGGC CACT GCCAGTAGCGTGA TTTTTGACCACTATT modD 1144509 - 1143655 - | molybdenum transport protein ModD SDY_1237 1145087 - 1144506 - | hypothetical protein SDY_1238 1145309 - 1145704 + | iso-IS1 ORF2 SDY_1239 1146092 - 1145679 - | hypothetical protein SDY_1240 1146860 - 1146102 - | putative iron compound ABC transporter, ATP-binding protein TERM 1306 1146651 - 1146598 - G 70 -5.8 -4.16392 | gap 2, opp_overlap 1146596, overlap 1146628 CTAAAAGCAAAAATA CCGTCGTGCGCCTGCGGCACCCAGGC AATA GCCTGCGCGC-GCTGGCG-ATGGCTG AGTGTCTGCACAGGG SDY_1241 1147837 - 1146857 - | putative iron compound ABC transporter, permease protein TERM 1307 1147698 - 1147715 + g 88 -8.5 -4.63218 | opp_overlap 1147697 TGCCAGAAGACAATT TGTTCCT GCAC AGGAACA TTTTCTTGACGAAGA SDY_1242 1148442 - 1147837 - | putative ATP-binding protein of ABC transporter SDY_1243 1148859 - 1148491 - | hypothetical protein TERM 1308 1148908 - 1148883 - R 79 -7.7 -4.48987 | TCCTGATAATTAAAA CCGCTATATAT TTAC ATATATATCGG AAAAAATCATGTTTG SDY_1244 1149324 - 1149109 - | iso-IS1 ORF2 TERM 1309 1149951 - 1149915 - RH 91 -8.2 -5.00616 | gap 1 TTCGTGGCGAAAAAA GAGCAATGCCAATTTTA TGCA CATAAT-GGCATTGCTC GATATACAGCAAAGT treA 1151663 - 1149966 - | trehalase SDY_1245 1151608 - 1151823 + | hypothetical protein TERM 1310 1152889 - 1152874 - TR 74 -8.2 -4.00066 | opp_overlap 1152886, overlap 1152877 TCTATAAGGTATAAA CCAGCC GGGA GGCCGG ACGGACGTGCAGGCC SDY_1248 1153748 - 1153413 - | putative dihydroxyacetone kinase SDY_1249 1153779 - 1154210 + | hypothetical protein SDY_1251 1158239 - 1157844 - | iso-IS1 ORF2 TERM 1311 1158729 - 1158756 + r 77 -11.4 -3.12352 | opp_overlap 1158734, overlap 1158734 GGACTCGGTGAAATG AAAAATCCACGC AATT GCGTGGATTTTA TATACTTTTGCGTTC TERM 1312 1158751 - 1158734 - R 100 -11.3 -4.98531 | opp_overlap 1158734 1158729 CGGTGAAATGAAAAA TCCACGC AATT GCGTGGA TTTTATATACTTTTG TERM 1313 1158734 - 1158751 + r 95 -11.3 -4.6709 | opp_overlap 1158734, overlap 1158729 CGGTGAAATGAAAAA TCCACGC AATT GCGTGGA TTTTATATACTTTTG ychF 1159903 - 1158812 - | translation-associated GTPase TERM 1314 1159368 - 1159382 + g 70 -7.1 -4.11216 | CTTAAATCCAGCGCG CGCAG CATAC CTGCG TTTTCCAGCTGGGGC TERM 1315 1159442 - 1159453 + g 72 -5.8 -4.38927 | TTTCGCGTCTTTATC GCCA CCTT TGGC TTTCTTCTGTACGCG pth 1160604 - 1160020 - | peptidyl-tRNA hydrolase TERM 1316 1160690 - 1160674 - H 73 -2.2 -5.24129 | CCGCTTGACAAAAAA CTGCGT ATCAA ATGCAG ATAACGTAATAATTG ychH 1160882 - 1161160 + | hypothetical protein ychM 1162867 - 1161215 - | putative sulfate transporter YchM TERM 1317 1163000 - 1162987 - R 100 -9.5 -5.76633 | opp_overlap 1162985 1162987 TTACAGACAAAAAAA CCCGC CGCA GCGGG TCTTTGAGCCGGGTT TERM 1318 1162987 - 1163000 + r 73 -9.5 -3.34894 | opp_overlap 1162987, overlap 1162985 TTACAGACAAAAAAA CCCGC CGCA GCGGG TCTTTGAGCCGGGTT prsA 1163966 - 1163019 - | ribose-phosphate pyrophosphokinase TERM 1319 1164097 - 1164083 - R 75 -10 -3.62522 | CAACGTCTGGAACAA GGTGAC GTT GTCACC GAAACTCAGCTTGCC ychB 1164968 - 1164117 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase lolB 1165591 - 1164968 - | outer membrane lipoprotein LolB TERM 1320 1165043 - 1165053 + g 75 -6.8 -4.371 | overlap 1165039 CATATTGGCTGGCAT CGCA GGT TGCG TTTTGGTGTCATAAC TERM 1321 1166209 - 1166195 - g 75 -5.6 -4.59773 | overlap 1166207 GCCGATTCGCAAAAA GGCCAT ATG AAGGCC AGCGAACTGGAACGC hemA 1165805 - 1167061 + | glutamyl-tRNA reductase TERM 1322 1167917 - 1167900 - g 79 -4.1 -5.1523 | TTCACAACATAAAAA CAAAGCG AAGG CGCTTTC AGTGCTCGGTGCTCG prfA 1167103 - 1168185 + | peptide chain release factor 1 hemK 1168185 - 1169018 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase SDY_1262 1169015 - 1169407 + | putative transcriptional regulator ychA 1169411 - 1170220 + | putative transcriptional regulator kdsA 1170256 - 1171110 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 1323 1171133 - 1171155 + T 100 -9.2 -5.1675 | opp_overlap 1171133 TGCTTGAAAAATAAA GTCTTAGCGT TCT GCGTTAAGAC TTTTTTCATGGGTGC TERM 1324 1171155 - 1171133 - T 80 -6.3 -4.85782 | opp_overlap 1171133 TGCTTGAAAAATAAA GTCTTAGCG TTCTG CGTTAAGAC TTTTTTCATGGGTGC TERM 1325 1171183 - 1171209 + T 78 -12.2 -2.72263 | opp_overlap 1171184, overlap 1171182 1171202 TGCCGGATACAAAAA AGGCCGCAGGCT GTT ACCCTGCGGCCG GTTTCGGGCGCATAT TERM 1326 1171208 - 1171184 - T 100 -15.7 -5.36441 | opp_overlap 1171183 1171182 1171202 GCCGGATACAAAAAA GGCCGCAGGCT GTT ACCCTGCGGCC GGTTTCGGGCGCATA TERM 1327 1171214 - 1171249 + T 76 -7.5 -4.21768 | gap 1, overlap 1171202 CCCTGCGGCCGGTTT CGGGCG-CATATTGCC ATCAC GGCAGCCTGACGCCCG TTTTCGCCTTACTTC SDY_1265 1171392 - 1171258 - | hypothetical protein TERM 1328 1171431 - 1171472 + r 80 -6.5 -4.78848 | gap 1, overlap 1171396 1171395 1171394 TGGTTTCAAGATTAG CCCCCGTTTTGTTGTCAGGT TTT ACCTCTCAACGTG-CGGGGG TTTTCTCTTTCCAGC TERM 1329 1171761 - 1171733 - R 73 -11.1 -2.67209 | CAGGAATTTATATTA TCTCCCCCGAT TTCCGTC ATCGGAGGAGA TATAACTGTCAGGCA chaA 1172870 - 1171770 - | calcium/sodium:proton antiporter insA 1173140 - 1173415 + | IS1 ORF1 insB 1173460 - 1173654 + | IS1 ORF2 TERM 1330 1174058 - 1174037 - g 72 -6.5 -4.30253 | overlap 1174040 TATAAAGATAAAGAA GATCGGCGT GATG ACGCCAGTC GCGAAGAAACCGCGC chaB 1173917 - 1174147 + | cation transport regulator TERM 1331 1174260 - 1174248 - f 73 -4.1 -4.7871 | overlap 1174257 AATGAGCAGTAAAAA TGTCC AGA AGACA CCAAAAAGTTGTCGC chaC 1174284 - 1174940 + | cation transport regulator ychN 1175397 - 1175044 - | hypothetical protein SDY_1272 1175933 - 1175718 - | hypothetical protein SDY_1273 1176128 - 1176523 + | iso-IS1 ORF2 narL 1178388 - 1177738 - | transcriptional regulator NarL narX 1180177 - 1178381 - | nitrate/nitrite sensor protein NarX TERM 1332 1178455 - 1178432 - G 70 -6 -4.15044 | gap 1, opp_overlap 1178432 TTTTTCGGGAATAAA GGTGACCACCA CTT CGGT-GCCACC TGATTCACGACGGCG TERM 1333 1178962 - 1178937 - G 74 -8.3 -3.92542 | TGCATCTGTAAACAA CTCACCTGCAT CTTC ATGCAAGAGAG AGATTGGGCAATAGA TERM 1334 1179144 - 1179120 - G 79 -12.1 -3.04792 | TGATCATGGCTAAGA TGACGCCCCTG CGG CAGGGTCGCCA GCAAAATACCGTACT TERM 1335 1180383 - 1180365 - g 75 -5.4 -4.60487 | opp_overlap 1180341, overlap 1180367 CAGCACCGTGAAAAA TCTCATAA TTT TTATGAAA TCACTGTACTCACTA SDY_1277 1180203 - 1180421 + | hypothetical protein TERM 1336 1180702 - 1180712 + G 81 -6.8 -4.67038 | opp_overlap 1180702 GTTGCGGTGAACTTA CCGA AAG TCGG TTTTAATTTTACGAC narK 1180516 - 1181907 + | nitrite extrusion protein TERM 1337 1181931 - 1181949 + F 100 -12.4 -5.64274 | ATTTGATTATCCTTT GCGCGGCA TGA TGTCGCGC TTTTTTTATGCGTCA TERM 1338 1182114 - 1182134 + F 73 -11.3 -2.57988 | opp_overlap 1182117, overlap 1182113 1182111 ATAAAACGTCTTAAT TTACAGCAT GTT ATGCTGTAA CTGTTAATTATCCTA TERM 1339 1182586 - 1182567 - g 76 -10.6 -3.32769 | opp_overlap 1182585, overlap 1182560 CTGCCAAACCATGAA CCTCGCGG CTGC CCGCGCGG TGCCAGCTACTCCTG TERM 1340 1184701 - 1184714 + G 72 -6.7 -4.1552 | ACGACATGAATACTT CGGAT ATGC ATCCG TTTATTCACCCGCTG narG 1182300 - 1186043 + | nitrate reductase 1, alpha subunit TERM 1341 1186137 - 1186123 - g 75 -5.6 -4.60041 | AGTTACCTGTAAAAA CGTCTG GAC CAGCCG TGAAGGCGTGGAATA narH 1186040 - 1187578 + | nitrate reductase 1, beta subunit TERM 1342 1187691 - 1187707 + G 76 -8 -4.25848 | opp_overlap 1187691 1187686 TCTGCCAAAAGAGGA TGCCCA TGTGC TGGGCA TTTTCCTGCGCGATT narJ 1187575 - 1188285 + | nitrate reductase 1, delta subunit, assembly function narI 1188285 - 1188962 + | nitrate reductase 1, cytochrome b(NR), gamma subunit TERM 1343 1188984 - 1188999 + T 100 -8.2 -5.60993 | opp_overlap 1188984 TTTAGTTCACATAGA CCCTGC TTCG GCGGGG TTTTTTTATGGGCAC purU 1190409 - 1189567 - | formyltetrahydrofolate deformylase TERM 1344 1189612 - 1189600 - G 77 -6.9 -4.44448 | ATTACCGTAAACAAA GACGC GCT GCGCC AGTACTTTGTAAAGC ychJ 1190917 - 1190459 - | hypothetical protein ychK 1191030 - 1191770 + | hypothetical protein hnr 1192028 - 1193041 + | response regulator of RpoS TERM 1345 1193867 - 1193855 - g 71 -3.3 -4.77757 | GTTGAAAAACCAAAA GCGGA TGT TGCGC CGTCTAATCTCGCTA TERM 1346 1193944 - 1193934 - g 70 -4.6 -4.56597 | CGTTGCTGGCAAAAA CCCC TCC GGGA GCTGGTGATGAAATT galU 1193243 - 1194151 + | UTP--glucose-1-phosphate uridylyltransferase subunit GalU TERM 1347 1194199 - 1194178 - T 79 -10.1 -3.76224 | opp_overlap 1194178, overlap 1194155 GTGTTATCCACGAAA CGGCGTTGA GCAA TCGACGCCG TTTTTTTATAGCTTA TERM 1348 1194178 - 1194199 + T 100 -12.3 -5.66684 | opp_overlap 1194155 1194178 GTGTTATCCACGAAA CGGCGTTGA GCAA TCGACGCCG TTTTTTTATAGCTTA TERM 1349 1194267 - 1194251 - T 100 -13.7 -5.55769 | opp_overlap 1194251 CCGGACAATAAAAAA TCCCGCC GAT GGCGGGA TTTTAAGCAAGTGCA TERM 1350 1194251 - 1194267 + T 100 -13.7 -4.08767 | opp_overlap 1194251 CCGGACAATAAAAAA TCCCGCC GAT GGCGGGA TTTTAAGCAAGTGCA hns 1194708 - 1194295 - | global DNA-binding transcriptional dual regulator H-NS TERM 1351 1194372 - 1194386 + g 77 -7.1 -4.55128 | CAGCTGGAGTACGGC CCTGG CCAGT CCAGG TTTTAGTTTCGCCGT tdk 1195312 - 1195929 + | thymidine kinase SDY_1291 1196350 - 1195955 - | iso-IS1 ORF2 TERM 1352 1197051 - 1197026 - H 72 -9.1 -3.61398 | opp_overlap 1197026 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT TERM 1353 1197026 - 1197051 + H 100 -9.8 -5.61596 | opp_overlap 1197026 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT SDY_1292 1197041 - 1198174 + | IS4 orf insA 1198225 - 1198500 + | IS1 ORF1 insB 1198545 - 1198739 + | IS1 ORF2 TERM 1354 1199162 - 1199133 - T 89 -9.3 -4.59109 | overlap 1199135 1199156 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACCCCAGAAGGGGC TERM 1355 1199160 - 1199135 - T 100 -16.3 -3.90762 | overlap 1199133 1199156 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACCCCAGAAGGG TERM 1356 1199210 - 1199223 + T 83 -4.5 -5.28826 | opp_overlap 1199210 AGCCCTACTGATTAA GCGGA TTTT TTCGC TTTTTTCTCAGCTTT adhE 1201881 - 1199206 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 1357 1199240 - 1199250 + g 88 -8.2 -4.64763 | overlap 1199243 TTTTTCTCAGCTTTA GCCG GAG CGGC TTCTTTTTTCGCTGC TERM 1358 1199243 - 1199253 + g 77 -3.2 -5.09225 | overlap 1199240 TTCTCAGCTTTAGCC GGAG CGG CTTC TTTTTTCGCTGCAGT SDY_1296 1202588 - 1202983 + | iso-IS1 ORF2 insA 1203112 - 1203387 + | IS1 ORF1 insB 1203432 - 1203809 + | IS1 ORF2 SDY_1299 1204461 - 1204066 - | iso-IS1 ORF2 TERM 1359 1204856 - 1204839 - g 77 -8.4 -4.05788 | opp_overlap 1204839, overlap 1204824 TCCTTTCAAATGAAA CGGAGC TGCCAT GCTCCG TTTACTTCGTCATTA TERM 1360 1204839 - 1204856 + G 74 -8.4 -3.98113 | opp_overlap 1204824 1204839 TCCTTTCAAATGAAA CGGAGC TGCCAT GCTCCG TTTACTTCGTCATTA SDY_1300 1204656 - 1204919 + | hypothetical protein TERM 1361 1205382 - 1205360 - f 73 -7.8 -4.08958 | ATCGCGAAAGAATAA TGTGTCTC GACAGGG GAGACACA GTACGAATCGACATA oppA 1205560 - 1207191 + | hypothetical protein TERM 1362 1207194 - 1207234 + F 76 -4.8 -4.87786 | gap 2, opp_overlap 1207200, overlap 1207195 1207198 1207199 TGTGAAGCACTGATG GCA-ATA-CGTGGGGCAGGG GCT TCCTGCTCCACGGTGTCTGA TTTTTATCGCATTAC TERM 1363 1207198 - 1207229 + F 74 -10.2 -3.22077 | gap 1, opp_overlap 1207200, overlap 1207195 1207194 1207199 AAGCACTGATGGCAA TA-CGTGGGGCAGGG GCT TCCTGCTCCACGGTG TCTGATTTTTATCGC TERM 1364 1207199 - 1207227 + F 83 -13.1 -3.16187 | opp_overlap 1207200, overlap 1207198 1207195 1207194 AGCACTGATGGCAAT ACGTGGGGCAGGG GCT TCCTGCTCCACGG TGTCTGATTTTTATC TERM 1365 1207226 - 1207200 - f 85 -13.7 -3.06492 | opp_overlap 1207199 1207198 1207195 1207194 GCACTGATGGCAATA CGTGGGGCAGG GGCTT CCTGCTCCACG GTGTCTGATTTTTAT TERM 1366 1207686 - 1207704 + G 70 -4.4 -4.5442 | opp_overlap 1207686, overlap 1207671 1207688 TGGGGCTGGCAATGA CCGGGGTT GTT ATCCCCAG TTTTGTGGTTGCGCC TERM 1367 1208118 - 1208135 + G 74 -2.7 -4.93877 | overlap 1208108 1208106 TAAGCCTGACCATCT TGGTTGG TGCT TTAACCA TTTTGTTTAATGCCA oppB 1207277 - 1208197 + | oligopeptide transporter permease TERM 1368 1208244 - 1208232 - g 100 -9.1 -5.1963 | GTTAAGTAAGAAAAA CAGCG AGA CGCTG GAAAATTTCAGTGAA oppC 1208212 - 1209120 + | hypothetical protein oppD 1209132 - 1210145 + | oligopeptide transporter ATP-binding component oppF 1210142 - 1211146 + | hypothetical protein TERM 1369 1211175 - 1211156 - T 100 -13.6 -5.19879 | opp_overlap 1211156 CTTTAAACACAAAAA GGGCTGAC AGTT GTCAGCCC TTTTTCACGCCGAAA TERM 1370 1211156 - 1211175 + T 100 -13.6 -4.56597 | opp_overlap 1211156 CTTTAAACACAAAAA GGGCTGAC AGTT GTCAGCCC TTTTTCACGCCGAAA SDY_1306 1211528 - 1211199 - | dsDNA-mimic protein cls 1213023 - 1211563 - | cardiolipin synthetase TERM 1371 1211604 - 1211592 - G 78 -9.1 -3.88577 | overlap 1211590 TGAAGAAGTAAAACA GTCGC TCG GCGAC ACGTTGCCATAATGG TERM 1372 1212230 - 1212201 - G 78 -8.5 -4.2461 | opp_overlap 1212203, overlap 1212204 1212205 AGTCGCAGGAATAAA TAATCCCCATCGC GGTG GCGATGGGGCCTT CCATACGCGCCATCA TERM 1373 1212227 - 1212204 - G 95 -12.4 -4.24413 | opp_overlap 1212203, overlap 1212201 1212205 CGCAGGAATAAATAA TCCCCATCGC GGTG GCGATGGGGC CTTCCATACGCGCCA TERM 1374 1212226 - 1212205 - G 100 -15.9 -3.13925 | opp_overlap 1212203, overlap 1212204 1212201 GCAGGAATAAATAAT CCCCATCGC GGTG GCGATGGGG CCTTCCATACGCGCC TERM 1375 1212490 - 1212467 - G 80 -5.2 -5.00616 | GGGCTGCGGAAAAAA GCTACACTCC CGGC GGAGTCGAGC ATCAATCGGCAATGA kch 1214646 - 1213393 - | voltage-gated potassium channel TERM 1376 1214929 - 1214899 - R 76 -9.1 -3.74178 | opp_overlap 1214902, overlap 1214905 TAAGGAAAGGCCAAA CAAGAACACGGTT GCAAA AACCGTGCCCTTA AATATTGAATCTCTA TERM 1377 1214923 - 1214905 - R 79 -8.9 -4.1023 | opp_overlap 1214902, overlap 1214899 AAGGCCAAACAAGAA CACGGTT GCAAA AACCGTG CCCTTAAATATTGAA yciI 1215242 - 1214946 - | YciI-like protein SDY_1310 1216727 - 1217092 + | insertion sequence 2 OrfA protein SDY_1311 1217050 - 1217928 + | insertion element IS2 transposase InsD SDY_1312 1218133 - 1218684 + | DNA invertase-like protein SDY_1313 1218765 - 1219067 + | IS911 ORF1 TERM 1378 1219173 - 1219153 - g 72 -4.6 -4.65838 | CAGATACTGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT SDY_1314 1219094 - 1219312 + | IS911 ORF2 TERM 1379 1219528 - 1219517 - g 77 -5.8 -4.63218 | opp_overlap 1219522 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SDY_1315 1219415 - 1219936 + | IS911 ORF2 TERM 1380 1220824 - 1220814 - g 81 -6.8 -4.62069 | GCGTGAGGTGAAAAA TGCG ATG CGCA GATGGCGTTATGAGC tonB 1220191 - 1220910 + | transport protein TonB TERM 1381 1220947 - 1220918 - T 100 -13.7 -4.08144 | opp_overlap 1220919 1220925, overlap 1220919 1220925 TTCAGTAAGCATAAA GTCAAAAGCCTCC GACC GGAGGCTTTTGAT TATTACTCAACAGGT TERM 1382 1220946 - 1220919 - T 100 -17.2 -3.04404 | opp_overlap 1220919 1220925, overlap 1220918 1220925 TCAGTAAGCATAAAG TCAAAAGCCTCC GACC GGAGGCTTTTGA TTATTACTCAACAGG TERM 1383 1220919 - 1220946 + T 100 -17.2 -3.71848 | opp_overlap 1220919 1220918 1220925, overlap 1220925 TCAGTAAGCATAAAG TCAAAAGCCTCC GACC GGAGGCTTTTGA TTATTACTCAACAGG TERM 1384 1220940 - 1220925 - T 93 -10.4 -4.40173 | opp_overlap 1220919 1220925, overlap 1220919 1220918 AGCATAAAGTCAAAA GCCTCC GACC GGAGGC TTTTGATTATTACTC TERM 1385 1220925 - 1220940 + T 93 -10.4 -4.5774 | opp_overlap 1220925 1220919 1220918, overlap 1220919 AGCATAAAGTCAAAA GCCTCC GACC GGAGGC TTTTGATTATTACTC yciA 1221348 - 1220950 - | acyl-CoA thioester hydrolase TERM 1386 1221401 - 1221367 - R 90 -10.8 -4.22948 | overlap 1221373 AAAACCGACTTAAAA GGAAAATCACAGGCGC GAT GCTACTATGATTTTCC TGAGGAGAACAGAGG yciB 1221992 - 1221453 - | intracellular septation protein A TERM 1387 1221683 - 1221699 + g 72 -4.3 -4.7254 | overlap 1221684 GTTCTTTACCCAGCA TCCGCTG AAT TAGCGGC TTTTTCATCACCCAT yciC 1222765 - 1222022 - | hypothetical protein TERM 1388 1223181 - 1223199 + G 82 -3 -5.28176 | overlap 1223183 CTCTGGCAGTGCCTT TGCGCATG AAG CAGGCGAA TTTTTTATGCGTGCA yciD 1223122 - 1223760 + | outer membrane protein W TERM 1389 1223796 - 1223774 - T 100 -14.2 -4.84017 | overlap 1223751 1223775 AATTCCGCACAAAAA CGACCCCGTA ATA TACGGGGTCA ATAAGGACATGGCAT TERM 1390 1223795 - 1223775 - T 100 -15.5 -3.49687 | overlap 1223751 1223774 ATTCCGCACAAAAAC GACCCCGTA ATA TACGGGGTC AATAAGGACATGGCA yciE 1224329 - 1223820 - | hypothetical protein TERM 1391 1224158 - 1224174 + g 71 -2.2 -5.00138 | GATCAAGAATAGTTT CCAGTT GAACA ATCTGG TTTTTGGTTTCACTA SDY_1322 1224572 - 1224357 - | IS600 ORF2 insA 1224614 - 1224889 + | IS1 ORF1 insB 1224934 - 1225311 + | IS1 ORF2 SDY_1325 1225795 - 1226142 + | iso-IS1 ORF2 SDY_1326 1226204 - 1226506 + | IS600 ORF1 SDY_1327 1226647 - 1227360 + | IS600 ORF2 TERM 1392 1227666 - 1227644 - T 95 -11.2 -4.45261 | overlap 1227645 TAAAGAAAGTTAAAA TGCCGCCAGC GGA ACTGGCGGCT GTGGGATTAACTGCG TERM 1393 1227665 - 1227645 - T 90 -14.7 -3.2553 | overlap 1227644 AAAGAAAGTTAAAAT GCCGCCAGC GGA ACTGGCGGC TGTGGGATTAACTGC trpA 1228479 - 1227673 - | tryptophan synthase subunit alpha trpB 1229672 - 1228479 - | tryptophan synthase subunit beta TERM 1394 1229543 - 1229561 + g 82 -7.4 -4.58395 | opp_overlap 1229545, overlap 1229546 GCAGGTCGTTGAACT GAGCCTGA AAT TCAGGATC TTTTTGCGCGCTGAC trpC 1231045 - 1229684 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase TERM 1395 1229775 - 1229787 + g 86 -10.5 -3.89614 | opp_overlap 1229774 1229773 1229770 GAATTAAAATCAAGT CCGGC GCA GCCGG TTTGTGCCGCTTCCA TERM 1396 1230655 - 1230642 - G 78 -8.1 -4.30833 | GAAAGCATTAATAAA CAGGC ATCA GCCTG GTAATAGCGCGCCAG trpD 1232641 - 1231046 - | bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase TERM 1397 1231176 - 1231203 + g 71 -10.6 -2.88054 | gap 1, opp_overlap 1231160, overlap 1231173 1231173 1231175 1231201 ATGGCGACGTTCGCC GCGACGGCTGCTT CAT GGGCAGC-GTCGC CTTTACCTTGTAACA TERM 1398 1231513 - 1231536 + g 74 -3 -4.90266 | GGTTAATCAATGGCC CCAGCACATT GAAC AGGGTGCGGG TTTTTAGTTGCTGGC trpE 1234203 - 1232641 - | anthranilate synthase component I TERM 1399 1233641 - 1233665 + g 71 -9.4 -3.53811 | overlap 1233642 ATGCGGGTGCTTTTT TTCTGATGGT CAATC ACCATCAGAG TTTCAGCGAGATAAA TERM 1400 1233642 - 1233664 + g 70 -10.7 -2.72144 | overlap 1233641 TGCGGGTGCTTTTTT TCTGATGGT CAATC ACCATCAGA GTTTCAGCGAGATAA TERM 1401 1234178 - 1234188 + g 82 -3.2 -5.20783 | TCGCAGGTTAGTAGT TCGA GAG TCGG TTTTTGTGTTTGCAT TERM 1402 1234251 - 1234233 - R 100 -8.8 -5.75342 | TTTGTTCAAAAAAAA GCCCGC TCATTAG GCGGGC TGGGTATCTGATTGC trpL 1234339 - 1234295 - | trp operon leader peptide yciV 1234477 - 1235358 + | putative enzymes yciO 1235319 - 1235975 + | hypothetical protein insA 1236040 - 1236315 + | IS1 ORF1 insB 1236360 - 1236737 + | IS1 ORF2 SDY_1338 1236766 - 1237191 + | hypothetical protein TERM 1403 1237323 - 1237349 + F 75 -11 -3.01712 | opp_overlap 1237313 1237312 CAGACTTTACTATCA GTGAGTCAGA TGTAAGT TCTGACTCAC TGTTGCACAAAAGCA TERM 1404 1237711 - 1237695 - g 74 -7.9 -4.07885 | opp_overlap 1237697 GACCGTCTGCCAAAA CTGCGTG GCG CACGCTG GATTGCCGTGGGGCG yciL 1237404 - 1238276 + | 23S rRNA pseudouridylate synthase B TERM 1405 1238285 - 1238305 + T 84 -8.3 -4.62872 | opp_overlap 1238282 1238285 CGGTTAATCAAAGTA TGCCGGA CGTCATA TCCGGCA TTTTTACAGATTAAT btuR 1238906 - 1238316 - | cob(I)yrinic acid a,c-diamide adenosyltransferase yciK 1239661 - 1238903 - | short chain dehydrogenase TERM 1406 1239992 - 1239980 - g 82 -9.1 -4.2528 | GCTCAACGTAATAAA CGCCA GCG TGGCG AGTTACGGGTCAACA sohB 1239881 - 1240921 + | putative periplasmic protease TERM 1407 1240930 - 1240949 + T 93 -10.7 -4.58773 | opp_overlap 1240930 GATGTAAAAGACAAA CGCGAGG GTAAGA CCTCGCG TTTTGCTTTAATCAA TERM 1408 1240949 - 1240930 - T 93 -10.7 -4.46775 | opp_overlap 1240930 GATGTAAAAGACAAA CGCGAGG GTAAGA CCTCGCG TTTTGCTTTAATCAA yciN 1241208 - 1240957 - | hypothetical protein TERM 1409 1241736 - 1241725 - g 70 -4.4 -4.58395 | CTCAGCTGCCAAAAA GAGT GCCG ACTC TACCTCCACCAAGAC TERM 1410 1242392 - 1242377 - g 74 -6 -4.56775 | AGTCTGCTGGAAAAA GCGCGC TACA GCGTGC TGGAACGTGAAGACA TERM 1411 1242509 - 1242498 - g 90 -4.4 -5.40072 | TTGGCGTGAAAAAAA CCAT GATG ATGG CGCAGCGTTTGTATG TERM 1412 1243868 - 1243847 - g 74 -8.7 -3.96216 | overlap 1243849 GCCCCACCGAAAGAA GATCCGGTA CCAT TACCGGAGC TGCCGTGCGAAAAAT TERM 1413 1243866 - 1243849 - g 77 -9.9 -3.57185 | overlap 1243847 CCCACCGAAAGAAGA TCCGGTA CCAT TACCGGA GCTGCCGTGCGAAAA topA 1241588 - 1244185 + | DNA topoisomerase I TERM 1414 1244209 - 1244241 + F 74 -10.8 -3.29121 | gap 1, opp_overlap 1244217, overlap 1244217 TCTATCAGGTTTTTA TAAACAAAGGGTCGC GAAA GCGGCCCTTT-TTTA TTGCATATTATTTTT TERM 1415 1244234 - 1244217 - f 81 -8.3 -4.55295 | opp_overlap 1244209 1244217 GTTTTTATAAACAAA GGGTCGC GAAA GCGGCCC TTTTTTATTGCATAT TERM 1416 1244217 - 1244234 + F 100 -10.5 -5.49234 | opp_overlap 1244217, overlap 1244209 GTTTTTATAAACAAA GGGTCGC GAAA GCGGCCC TTTTTTATTGCATAT cysB 1244395 - 1245369 + | transcriptional regulator CysB TERM 1417 1245380 - 1245420 + T 91 -8.6 -5.00851 | gap 1, overlap 1245383 AATAATTTCTTGCGT TAT-TTTCGGCACCTTT TTTGTAGC GAAGGTGCCGAAATATA TTTTCTTTCGTTACT TERM 1418 1245383 - 1245416 + T 86 -11.9 -3.62235 | overlap 1245380 AATTTCTTGCGTTAT TTTCGGCACCTTT TTTGTAGC GAAGGTGCCGAAA TATATTTTCTTTCGT insB 1246006 - 1245629 - | IS1 ORF2 insA 1246326 - 1246051 - | IS1 ORF1 SDY_1348 1246440 - 1246604 + | hypothetical protein yciX 1246586 - 1246774 + | hypothetical protein TERM 1419 1246991 - 1247006 + T 93 -11.8 -3.66643 | CTCACTGATCCTTGA CCCCGC TGCG GCGGGG TTGTCATTTGCTTTG TERM 1420 1247511 - 1247550 + T 74 -7.3 -4.32034 | gap 2, overlap 1247510 TTAACCCGCTCTCAC CGGTCGACCTGGTCATTGA CCAC TCGGTGACC-G-TCGATCG TTTTGGTGATGATGA SDY_1351 1249952 - 1249161 - | IS600 ORF2 SDY_1352 1250395 - 1250093 - | IS600 ORF1 TERM 1421 1250710 - 1250700 - R 72 -8.2 -3.82433 | opp_overlap 1250699, overlap 1250690 ATAAGCAGGAGCAAA CGCC GCT GGCG GTGATTGCCGGGAAA TERM 1422 1251132 - 1251098 - R 78 -11.6 -2.98947 | opp_overlap 1251098, overlap 1251095 TTGAAGTAACAAGTA TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA TGAATTACACAATGC TERM 1423 1251098 - 1251132 + r 76 -11.6 -2.52896 | opp_overlap 1251098 1251095 TTGAAGTAACAAGTA TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA TGAATTACACAATGC ribA 1251745 - 1251155 - | GTP cyclohydrolase II pgpB 1251915 - 1252679 + | phosphatidylglycerophosphatase B yciS 1252828 - 1253136 + | hypothetical protein TERM 1424 1253950 - 1253936 - g 70 -7.1 -4.08945 | AGCAGTTGGGTAAAA CTGCC GAATG GGCAG AATTCCTGCAACGCG yciM 1253143 - 1254312 + | hypothetical protein pyrF 1254505 - 1255242 + | orotidine 5'-phosphate decarboxylase yciH 1255239 - 1255568 + | translation initiation factor Sui1 TERM 1425 1255577 - 1255596 + T 100 -13.6 -3.71687 | opp_overlap 1255577, overlap 1255570 CGGTTAACATAAAAA GCCACGGA TATA TCCGTGGC TTTCGAATATTTTAC TERM 1426 1255596 - 1255577 - T 100 -13.6 -5.0916 | opp_overlap 1255577 1255570 CGGTTAACATAAAAA GCCACGGA TATA TCCGTGGC TTTCGAATATTTTAC insB 1256243 - 1255866 - | IS1 ORF2 insA 1256563 - 1256288 - | IS1 ORF1 SDY_1361 1257478 - 1256729 - | putative DEOR-type transcriptional regulator SDY_1362 1257741 - 1257568 - | hypothetical protein insA 1259930 - 1260205 + | IS1 ORF1 insB 1260250 - 1260627 + | IS1 ORF2 TERM 1427 1260820 - 1260783 - T 74 -5.7 -4.57569 | gap 1 CTAGTTTTGGAAAAA CGCCAGTTTTCAAAC-GA AAG TCAGTTAAAAAACTGCCG GGATATGATGAAGGT TERM 1428 1260876 - 1260852 - T 100 -15.8 -4.42062 | GAGCGGGGAAATAAA CGGCCCATTC ATAAG GAATGGGCCG TGAAAGGAGATTACG rnb 1262821 - 1260887 - | exoribonuclease II TERM 1429 1261072 - 1261061 - G 72 -7.2 -4.2461 | opp_overlap 1261060 1261061 AGGTGCAGGAATAAA GGCG ATAG CGCC GTTATCAACCAAACG TERM 1430 1262527 - 1262540 + g 72 -4.5 -4.62336 | opp_overlap 1262527 GATGATCAGGAACGA TGGCC AGAC GGTCA TTTTTGCCCTGAACT yciW 1263890 - 1262889 - | putative oxidoreductase TERM 1431 1263525 - 1263514 - G 75 -4.4 -4.75309 | opp_overlap 1263514 TGAAAGCCAATAAAA CCAA TGAT TTGG TTAATGATCACACAG TERM 1432 1264122 - 1264102 - R 76 -8.9 -3.71149 | opp_overlap 1264102 1264103, overlap 1264103 GTATAACAGAGATAA CGGGCGGCA GAA CGCCACCCA TCTTTACCAACAGAA TERM 1433 1264121 - 1264103 - R 72 -10.2 -2.81966 | opp_overlap 1264103 1264102, overlap 1264102 TATAACAGAGATAAC GGGCGGCA GAA CGCCACCC ATCTTTACCAACAGA fabI 1264929 - 1264141 - | enoyl-(acyl carrier protein) reductase TERM 1434 1265056 - 1265086 + r 70 -10.5 -2.51179 | opp_overlap 1265074, overlap 1265055 1265055 GGCTATAGTTGCGCT TTCTGTACCGGAG AGAAG CTGCGGTACAGAG CATTTTGCGTTATCT SDY_1369 1265761 - 1265366 - | iso-IS1 ORF2 TERM 1435 1266155 - 1266138 - g 75 -4.9 -4.8269 | TATAATCAGCAAAAA TGAGAAC GATC ATTCTCA CCAAGTGATAGGCCA SDY_1370 1265956 - 1266249 + | hypothetical protein SDY_1371 1266641 - 1266246 - | iso-IS1 ORF2 TERM 1436 1268608 - 1268634 + G 74 -10.8 -3.22102 | opp_overlap 1268593, overlap 1268606 1268611 CAATGGGCGAGATTT CTGGCGCACTGG TTG CCATTGCGCTGG TGTTGTCAGCCGTAT TERM 1437 1268611 - 1268631 + G 70 -11.1 -2.80074 | opp_overlap 1268593, overlap 1268608 1268606 TGGGCGAGATTTCTG GCGCACTGG TTG CCATTGCGC TGGTGTTGTCAGCCG TERM 1438 1268952 - 1268962 + G 72 -6.8 -4.16016 | opp_overlap 1268952 CTGATGATGTGGAAA CTGC CGG GCAG TTTCTTACCCACTGA SDY_1372 1267290 - 1270391 + | putative multidrug-efflux transport protein SDY_1373 1270401 - 1270898 + | hypothetical protein SDY_1374 1270947 - 1271774 + | putative outer membrane channel protein SDY_1375 1271783 - 1272934 + | putative membrane transport protein SDY_1376 1274179 - 1272983 - | ISSfl2 ORF TERM 1439 1273036 - 1273008 - G 71 -3.2 -4.82901 | TGCGGGGTATAAAAA GTCCCG-TCGCGCA TCA TG-GCGAACAGAAC GTCGCAGCGTCGTCT TERM 1440 1274016 - 1274041 + g 71 -3.3 -4.74518 | gap 1, opp_overlap 1273996, overlap 1274002 1274017 ATCTGACCATGTTGT TTCAGGTCAGAT ATT AGC-GACCTGAG TTTGTTTTCGTCGTT sapF 1275244 - 1274438 - | putative ATP-binding protein of peptide transport system TERM 1441 1275187 - 1275204 + g 77 -6.9 -4.45664 | opp_overlap 1275183 1275182 1275186 1275187 GGCGACGAAACCAAC CGGTCCG GTAG CGGAACG TTTTACTTAAATTAC sapD 1276238 - 1275246 - | putative ATP-binding protein of peptide transport system TERM 1442 1275638 - 1275660 + g 73 -12 -2.81088 | overlap 1275637 1275655 GGTTGAGGCGCGTCA GCAGGCGAAA GAT TTGCGCCTGC GTTGTTGGCTCCATT TERM 1443 1275869 - 1275856 - G 70 -4.5 -4.52589 | opp_overlap 1275836 TTGCGCCAGACAAAA CGCTG CCAC CAACG GCCTTTATAGGTCCA sapC 1277128 - 1276238 - | SapC TERM 1444 1276844 - 1276823 - G 86 -10.9 -3.96892 | gap 1 AAGTGTCACCACAAA TGCGCC-ACC CAC GGTTGGCGCA GCTCCGCTCAGTAAA TERM 1445 1277085 - 1277099 + g 82 -9.2 -4.26188 | CAGGCGGTACGCAGC GTGCCC GGC GGGCGC TTTTCGCTGTATACG TERM 1446 1277304 - 1277264 - g 74 -2.5 -5.13741 | opp_overlap 1277264, overlap 1277265 1277277 CCAATTTAAGAAAAA TGTGTACACTAAAGTGTAT ACG AAACACGAGGGTGTACACA TTGCTCACCGATACA TERM 1447 1277751 - 1277737 - g 80 -5.7 -4.90002 | opp_overlap 1277736 1277737 1277742 GAACAGACAACAAAA GCTCA CTGGC TGAGC CTGTTTGATTCGATG int 1277263 - 1278492 + | integrase insA 1278706 - 1278981 + | IS1 ORF1 TERM 1448 1279523 - 1279510 - T 93 -9.5 -4.7078 | opp_overlap 1279510 TTAATCATCGAAAAA CCGCC CGAA GGCGG TTGTCAGTTGATTGA TERM 1449 1279510 - 1279523 + T 73 -9.5 -3.45134 | opp_overlap 1279510 TTAATCATCGAAAAA CCGCC CGAA GGCGG TTGTCAGTTGATTGA TERM 1450 1279547 - 1279572 + T 70 -4.7 -4.50661 | overlap 1279539 TGATTGATGTGCGGC GCATTTTGCGA AGGC TGGCAATATGC TTTTCCTTCTCAATT SDY_1382 1280507 - 1279827 - | exonuclease bet 1281289 - 1280504 - | recombination protein Bet TERM 1451 1280622 - 1280611 - G 70 -4.4 -4.56597 | TGTTGCGGCGAAAAA TCTG GGAA CAGA GCGGCAACAGGTCGT gam 1281591 - 1281295 - | putative host-nuclease inhibitor protein Gam SDY_1385 1282082 - 1281588 - | hypothetical protein TERM 1452 1281949 - 1281975 + g 85 -2.9 -5.42259 | gap 1, overlap 1281951 TCAGGGCAGTTACCC CCGCC-AGTCTG ACCA CAGACGCGGCAG TTTTTTTCCAGCTCC TERM 1453 1281983 - 1282010 + g 73 -11.3 -2.56181 | overlap 1281982 1281980 CGCGGCAGTTTTTTT CCAGCTCCGGT TGCGCT ACTGGGGCTGG CTGTTGCTCTTCTGG TERM 1454 1282053 - 1282072 + g 70 -6.4 -4.23104 | overlap 1282044 1282065 CGTATCCGGGCTGTT TTGTCCCG CTTC TGGGGCAA TTTGTTCCACTTTGG SDY_1386 1282475 - 1282777 + | IS600 ORF1 SDY_1387 1282813 - 1283229 + | IS600 ORF2 SDY_1388 1283258 - 1283692 + | IS600 ORF2 stxA 1283865 - 1284812 + | Shiga toxin subunit A precursor stxB 1284822 - 1285091 + | Shiga toxin subunit B precursor TERM 1455 1285350 - 1285367 + F 95 -12.7 -4.30719 | TAGCGCCACTCTCCA GCCCCTC TCCG GAGGGGC TTTCTTATGGACAAA TERM 1456 1285407 - 1285386 - f 100 -12.3 -5.28176 | gap 1 CTTATGGACAAAAAA GCCCGCG-CT GGG AGACGCGGGC GGCAAGGAATAAACA TERM 1457 1286651 - 1286633 - g 72 -8.8 -3.72593 | opp_overlap 1286633 1286630 1286645, overlap 1286624 1286635 AACAAACCGGAAGAA GACCCGGA CAT TCCGGGTA TCGGTTATTACGGTT TERM 1458 1286649 - 1286635 - g 82 -11.4 -3.4314 | opp_overlap 1286633 1286630 1286645, overlap 1286624 1286633 CAAACCGGAAGAAGA CCCGGA CAT TCCGGG TATCGGTTATTACGG yjhS 1285601 - 1287511 + | hypothetical protein TERM 1459 1287504 - 1287494 - f 80 -6.8 -4.62772 | GTTAAAGCAAACAAA GCTG GAG CAGC CGCATAATTGCTAAA TERM 1460 1287535 - 1287524 - f 90 -7.2 -5.43866 | overlap 1287525 TAATTGCTAAAAAAA GCCG CCAG CGGC AGGAATGGAAGCTGG SDY_1392 1287698 - 1288105 + | hypothetical protein TERM 1461 1288118 - 1288141 + F 95 -11 -4.37544 | opp_overlap 1288120 TAAGCATGCGCAAGG GACCATCGGT GTGT GCCGGTGGTC TTTATATTGTTGTGA SDY_1393 1288182 - 1288397 + | lysis protein S TERM 1462 1288518 - 1288507 - g 70 -4.4 -4.47707 | overlap 1288512 1288517 CTTGACGAAAAAGAA GGTA ACCA TACC ACGGCATACCGTGAT SDY_1394 1288402 - 1288935 + | putative endolysin TERM 1463 1289025 - 1289059 + T 90 -13 -3.55191 | opp_overlap 1289030, overlap 1289030 TAAGTGAGTAAAAGT AAAAACCCCGTTTGTT GGC AGCAAGCGGGGTTTTG TGTTTCTGACCTTGA TERM 1464 1289030 - 1289054 + T 100 -12.9 -4.84918 | opp_overlap 1289030, overlap 1289025 GAGTAAAAGTAAAAA CCCCGTTTGTT GGC AGCAAGCGGGG TTTTGTGTTTCTGAC TERM 1465 1289054 - 1289030 - T 100 -8.5 -5.1166 | opp_overlap 1289030 1289025 GAGTAAAAGTAAAAA CCCCGTTTGTT GGC AGCAAGCGGGG TTTTGTGTTTCTGAC SDY_1395 1289998 - 1289159 - | IS911 ORF2 TERM 1466 1289567 - 1289578 + g 77 -5.8 -4.63218 | opp_overlap 1289563 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG TERM 1467 1289919 - 1289939 + g 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG insA 1290194 - 1290469 + | IS1 ORF1 insB 1290514 - 1290891 + | IS1 ORF2 TERM 1468 1290991 - 1290981 - f 76 -4.6 -4.98522 | AACTTCAGAGAAAAA CGGA TTA CCCG CCGTAGTTTTGGTCG TERM 1469 1291312 - 1291333 + F 100 -4.5 -6.00086 | overlap 1291313 AATGGCCTGGCCCCC ACATTCATA TCCT TATGAATGA TTTTTTTTCTGGTCT TERM 1470 1291313 - 1291332 + F 73 -8 -4.17611 | overlap 1291312 ATGGCCTGGCCCCCA CATTCATA TCCT TATGAATG ATTTTTTTTCTGGTC ycjX 1291370 - 1292767 + | putative YcjX TERM 1471 1293754 - 1293742 - g 86 -10.5 -3.99592 | opp_overlap 1293741 1293728 1293727 1293742 ATTGACGATGACAAA CCCCG CCT CGGGG ATTTCCGTCGTCAGC TERM 1472 1293742 - 1293754 + G 70 -10.5 -2.80796 | opp_overlap 1293742, overlap 1293741 1293728 1293727 ATTGACGATGACAAA CCCCG CCT CGGGG ATTTCCGTCGTCAGC ycjF 1292764 - 1293798 + | hypothetical protein tyrR 1293973 - 1295514 + | DNA-binding transcriptional regulator TyrR TERM 1473 1295563 - 1295509 - T 72 -8.9 -3.63862 | gap 2, opp_overlap 1295511 1295517 1295522, overlap 1295515 1295524 CAGAAGAAGAACGAA GAGTAAGCGCGAATATGCCTGATGGTG CAA CACCATCAGGCATATT-A-ACTTATGC TTTCAGTACAGCCAG TERM 1474 1295511 - 1295563 + T 86 -12.1 -3.64703 | opp_overlap 1295509 1295515 1295524, overlap 1295517 1295522 GAAGAAGAACGAAGA GTAAGCGCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAACTTATGC TTTCAGTACAGCCAG TERM 1475 1295559 - 1295515 - T 90 -13.7 -3.4382 | opp_overlap 1295511 1295517 1295522, overlap 1295509 1295524 AAGAACGAAGAGTAA GCGCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAACTT ATGCTTTCAGTACAG TERM 1476 1295517 - 1295557 + T 100 -18.5 -3.61609 | opp_overlap 1295515 1295509 1295524, overlap 1295511 1295522 GAACGAAGAGTAAGC GCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAAC TTATGCTTTCAGTAC TERM 1477 1295522 - 1295552 + T 100 -21.4 -3.27601 | opp_overlap 1295515 1295509 1295524, overlap 1295517 1295511 AAGAGTAAGCGCGAA TATGCCTGATGGTG CAA CACCATCAGGCATA TTAACTTATGCTTTC TERM 1478 1295550 - 1295524 - T 100 -19.6 -3.06737 | opp_overlap 1295522 1295517 1295511, overlap 1295515 1295509 GAGTAAGCGCGAATA TGCCTGATGGTG CAA CACCATCAGGCA TATTAACTTATGCTT tpx 1296064 - 1295558 - | thiol peroxidase ycjG 1296141 - 1297148 + | putative muconate cycloisomerase I ycjI 1297911 - 1297123 - | murein peptide amidase A TERM 1479 1297832 - 1297817 - G 73 -11.8 -2.71712 | overlap 1297816 GTTCCGGGCGGAAAT GCGCCG CGTT CGGCGC GTGGGCGAGTTACGG TERM 1480 1297902 - 1297915 + g 75 -5.3 -4.63932 | TTGTGCAAATTTTGC GGATT ATCA AATCC TTTTCTTCAACGCTA TERM 1481 1298122 - 1298098 - R 100 -13.7 -4.22591 | AATAAGTTTAATAAA TCGTACTGCAC ATA GTACAGTACGA TGGTAGCTATATAAT SDY_1405 1298694 - 1298299 - | iso-IS1 ORF2 SDY_1406 1298889 - 1299365 + | hypothetical protein SDY_1407 1299704 - 1300099 + | iso-IS1 ORF2 ycjZ 1300229 - 1301128 + | putative transcriptional regulator LYSR-type TERM 1482 1301704 - 1301690 - g 70 -7.1 -4.11884 | AATCAGAACGAGAAA GGGGA GATTG TCCCC GGCGTTGCGACTCAG TERM 1483 1302470 - 1302460 - g 70 -6.8 -4.09864 | opp_overlap 1302459 1302460 AGGGACGGGCGAAAA GCCA GCG TGGC ATTTTACACCAGATA SDY_1409 1301444 - 1303078 + | putative transport periplasmic protein TERM 1484 1303090 - 1303117 + T 83 -14.2 -2.74525 | overlap 1303085 1303087 TTGATGTGATGGGAA CTGGCGTTACCC TTGT GGATAACGCCAG TGATGTCTGATTTAG SDY_1410 1304160 - 1303129 - | hypothetical protein TERM 1485 1303257 - 1303236 - G 70 -5.1 -4.43877 | overlap 1303237 TAATCTTCAAATAAA CGTCTTGCT GTGC AGCAAGCCA CTCAGCCCATACCGT insB 1304918 - 1304541 - | IS1 ORF2 insA 1305238 - 1304963 - | IS1 ORF1 TERM 1486 1305468 - 1305447 - R 100 -10.1 -5.30155 | opp_overlap 1305449, overlap 1305449 GCAGTAAGTAAAAAA TAGGCCCGA TAAC TCGGGCCTT GTCAATTATTGAATA TERM 1487 1305466 - 1305449 - R 95 -12.7 -4.27681 | opp_overlap 1305449, overlap 1305447 AGTAAGTAAAAAATA GGCCCGA TAAC TCGGGCC TTGTCAATTATTGAA TERM 1488 1305449 - 1305466 + r 88 -12.7 -3.47751 | opp_overlap 1305449 1305447 AGTAAGTAAAAAATA GGCCCGA TAAC TCGGGCC TTGTCAATTATTGAA ydaA 1306438 - 1305488 - | universal stress protein UspE SDY_1414 1306927 - 1306532 - | iso-IS1 ORF2 TERM 1489 1307342 - 1307294 - R 79 -12 -3.18912 | overlap 1307273 TCACCCAGTGATGAA CCTTCTGCCAGATCAATAAATC AGAAA AATTTAATGATATGACAGAAGG ATAGTGAGTTATGCG fnr 1308116 - 1307364 - | fumarate/nitrate reduction transcriptional regulator TERM 1490 1308263 - 1308246 - R 76 -8.5 -4.14739 | opp_overlap 1308246 1308243 CTATCTATTTGAAAA CCCTTAA GTTG TTAAGGG TGGCTTTACATAAAA ogt 1308826 - 1308311 - | O-6-alkylguanine-DNA:cysteine-protein methyltransferase TERM 1491 1309241 - 1309213 - R 100 -10.3 -5.9003 | AAATGAATAAAAAAA TAGAGCCTGTCGA CAT CCGCCAGACTCTA CAGTACACACAGCAG SDY_1417 1309550 - 1309269 - | hypothetical protein SDY_1418 1309745 - 1310140 + | iso-IS1 ORF2 TERM 1492 1310936 - 1310961 + G 72 -10.4 -3.34227 | opp_overlap 1310931 GCGTAACCAACGTGC GCCGCAGCGT ATCGAC ACGCTGCAGC TTGATAATTTCCTCA ydaL 1310832 - 1311395 + | hypothetical protein SDY_1420 1311715 - 1311416 - | hypothetical protein TERM 1493 1311997 - 1311983 - g 73 -11.4 -2.70704 | opp_overlap 1311982, overlap 1311982 1311978 AGGCGTTAAATGAAG CTCGCC TTG GGCGAG ATATATTAAAAAAAG SDY_1421 1311754 - 1312056 + | IS600 ORF1 SDY_1423 1313916 - 1312936 - | hypothetical protein SDY_1422 1312197 - 1313003 + | IS600 ORF2 TERM 1494 1313148 - 1313187 + gF 71 -3.4 -4.75372 | gap 1, overlap 1313172 GTAATCCGGTCATCG CGTCATGGTGAGCAGCATG TTC CA-GCTGCTCCTCCAGCCG TTTTTGCTCAGTAAT TERM 1495 1313547 - 1313518 - Gf 82 -2.9 -5.28176 | gap 1, opp_overlap 1313518, overlap 1313519 1313520 GTTAGTCAGAAAAAA GCGCGCATAAAAAC CTT GTTTTT-TGCGCTG ATAATTTGCCGAGCG zntB 1314171 - 1315154 + | zinc transporter TERM 1496 1315207 - 1315190 - T 72 -2.7 -4.96848 | gap 1 CTCTGTATACAAAAA CGCCGCAA AGT TTG-AGCG AAGTCAATAAACTCT TERM 1497 1315344 - 1315363 + T 100 -10 -5.85178 | ATTGATTCGTACGAC GCCGACTT TGAT GAGTCGGC TTTTTTTTGCCTGTT TERM 1498 1316524 - 1316501 - T 87 -14.6 -2.80074 | opp_overlap 1316498 1316490, overlap 1316498 1316496 GCCTCCATAAGAGTA GCCCGATACG CTTG CGCATCGGGC GCTATCCTGGTTATT ydaO 1317470 - 1316535 - | C32 tRNA thiolase TERM 1499 1317215 - 1317227 + g 84 -10.5 -3.71672 | CGAGCAGAACGTGTT CCGGG AAG CCCGG TTGCTTTTGATCGAG TERM 1500 1317389 - 1317410 + g 83 -5.7 -5.0809 | opp_overlap 1317344 1317383 AGTCAGCAATGGCTT CGCCCACGT TACG ACGCAGGCG TTTTTGTAATTTGTT SDY_1427 1317761 - 1317522 - | hypothetical protein SDY_1428 1318502 - 1317789 - | IS600 ORF2 insB 1318978 - 1318580 - | IS1 ORF2 insA 1319275 - 1319000 - | IS1 ORF1 SDY_1431 1320100 - 1320495 + | iso-IS1 ORF2 TERM 1501 1320951 - 1320901 - f 93 -9.9 -4.64844 | gap 1, opp_overlap 1320947 GGCAGATAGAGAAAA GCCCCAG-TTAACACTACGCGTCC TGCA AGACGCTTAACATTAATCTGAGGC CAATTTCATGCTAGA TERM 1502 1321045 - 1321030 - g 86 -9 -4.36411 | TATGAAGCAGCAAAA GGCGAT GTTA ATCGCC CTGATCGTCATCTGT relF 1321016 - 1321171 + | polypeptide destructive to membrane potential TERM 1503 1321205 - 1321174 - f 74 -10.8 -3.17229 | opp_overlap 1321174 1321176, overlap 1321172 1321192 ACCTGAGGAGTAAGA GACCCGGCGAGGGA GAAA TCCCTCGCCACCTC TGATGTGGCAGGCAT TERM 1504 1321242 - 1321255 + F 100 -9.5 -5.77734 | opp_overlap 1321242 CGCACCCGCACTTAA CCCGC TTCG GCGGG TTTTTGTTTTTATTT TERM 1505 1321255 - 1321242 - f 70 -9.5 -3.06183 | opp_overlap 1321242 CGCACCCGCACTTAA CCCGC TTCG GCGGG TTTTTGTTTTTATTT rem 1321388 - 1321639 + | hypothetical protein TERM 1506 1321714 - 1321685 - f 77 -11.4 -3.13403 | overlap 1321683 TCCCGCTGAGTAACA CCGTGCCACCGG AGAAAA CCGATGGCACGC AACGCAAAATATTAC SDY_1434 1321986 - 1323035 + | hypothetical protein SDY_1435 1323048 - 1323422 + | putative endonuclease of prophage CP-933O SDY_1436 1323419 - 1324240 + | antitermination protein Q homolog of cryptic prophage TERM 1507 1324327 - 1324338 + F 76 -2.2 -5.4505 | gap 1, opp_overlap 1324323, overlap 1324327 AGTTTCTACAACCCG CC-GC CGA GCAGG TTTTTTATTGCGGAA insA 1324726 - 1325001 + | IS1 ORF1 insB 1325046 - 1325423 + | IS1 ORF2 SDY_1441 1326018 - 1325794 - | hypothetical protein SDY_1442 1326213 - 1326608 + | iso-IS1 ORF2 SDY_1443 1326609 - 1326815 + | hypothetical protein SDY_1444 1326985 - 1327287 + | IS600 ORF1 SDY_1445 1327428 - 1328141 + | IS600 ORF2 TERM 1508 1328307 - 1328328 + T 100 -15.9 -4.3341 | CATAGCGCCACTCTC CAGCCCCTC TCCG GAGGGGCTG TTTATATTGATTTTG SDY_1446 1328930 - 1328535 - | iso-IS1 ORF2 SDY_1447 1329125 - 1329325 + | hypothetical protein SDY_1448 1329300 - 1329542 + | hypothetical protein TERM 1509 1329743 - 1329773 + F 95 -12.7 -4.03219 | opp_overlap 1329747, overlap 1329747 GCTTGCATTAGTTAT CAGAGCCATCAGT AGTTA ACTGGTGGCTTTG TTATTGTTGTCAGCT TERM 1510 1329747 - 1329769 + F 93 -9.9 -4.60292 | opp_overlap 1329747, overlap 1329743 GCATTAGTTATCAGA GCCATCAGT AGTTA ACTGGTGGC TTTGTTATTGTTGTC SDY_1449 1329900 - 1330265 + | insertion sequence 2 OrfA protein SDY_1450 1330223 - 1331128 + | insertion element IS2 transposase InsD SDY_1451 1332306 - 1331593 - | IS600 ORF2 SDY_1452 1332749 - 1332447 - | IS600 ORF1 TERM 1511 1333184 - 1333198 + H 76 -4.2 -5.06816 | ATACATATGTCTCTG GCGCAA TGC TTGGGC TTTTTATTCGCACAT SDY_1453 1333431 - 1333796 + | hypothetical protein TERM 1512 1333803 - 1333835 + T 73 -10.6 -3.10012 | gap 1, opp_overlap 1333802 1333803 GTGGAATAACAGAAG CTGCGGCACG-TCGT ATGC AGGAACGTGCCGCGG TTGGCTGGTAAACTT sitD 1334854 - 1333997 - | Iron transport protein, inner membrane component sitC 1335708 - 1334851 - | iron transport protein, inner membrane component sitB 1336532 - 1335705 - | Iron transport protein, ATP-binding component sitA 1337446 - 1336532 - | Iron transport protein, periplasmic-binding protein TERM 1513 1337482 - 1337497 + r 79 -7.6 -4.4009 | opp_overlap 1337482 1337491 CAAAATTAGAACAAA CATAGC AACG GCTATG TTTTATAGCATAACC TERM 1514 1337497 - 1337482 - R 79 -7.6 -4.4522 | opp_overlap 1337482, overlap 1337491 CAAAATTAGAACAAA CATAGC AACG GCTATG TTTTATAGCATAACC TERM 1515 1338025 - 1338006 - R 100 -10.7 -4.95957 | opp_overlap 1338005 1338006 GAAATGAATCAAAAA GCCCGCA GCAATG TGCGGGC GTTAGTGTCAGCGCA TERM 1516 1338006 - 1338025 + r 70 -10.7 -2.55351 | opp_overlap 1338006, overlap 1338005 GAAATGAATCAAAAA GCCCGCA GCAATG TGCGGGC GTTAGTGTCAGCGCA ynaF 1338539 - 1338033 - | putative filament protein TERM 1517 1338599 - 1338581 - R 76 -4.4 -5.03945 | GAATAAGCAGAAAAA GCCAGCCA TAA CAGCGGGC AGGAGGATTTAGAAC SDY_1460 1340696 - 1339983 - | IS600 ORF2 TERM 1518 1341332 - 1341303 - R 87 -7.1 -5.10064 | opp_overlap 1341308, overlap 1341305 1341308 TCCAACATATAAAAA GACAAGCCCGAAC AGTC GTCCGGGCTTTTT TTTAGAATTGGATAA TERM 1519 1341330 - 1341305 - R 83 -9.7 -4.16832 | opp_overlap 1341308, overlap 1341303 1341308 CAACATATAAAAAGA CAAGCCCGAAC AGTC GTCCGGGCTTT TTTTTAGAATTGGAT TERM 1520 1341308 - 1341327 + r 100 -9.2 -5.81032 | opp_overlap 1341305 1341303 1341308 CATATAAAAAGACAA GCCCGAAC AGTC GTCCGGGC TTTTTTTTAGAATTG TERM 1521 1341327 - 1341308 - R 89 -11.4 -4.16226 | opp_overlap 1341308, overlap 1341305 1341303 CATATAAAAAGACAA GCCCGAAC AGTC GTCCGGGC TTTTTTTTAGAATTG ydbK 1344888 - 1341364 - | putative oxidoreductase, Fe-S subunit TERM 1522 1343208 - 1343195 - G 77 -3.1 -5.1287 | overlap 1343196 GTCAGATGGAAAAAA GCCAT CTGC ATGAC GGTATTAATACGGGC TERM 1523 1343892 - 1343904 + g 70 -6.9 -4.13903 | GATAGAGCGGTTCTG CCTGG GCA CCGGG TTCTTTGGTTCTGTC TERM 1524 1345081 - 1345066 - H 83 -4.6 -5.27769 | opp_overlap 1345070 ATAAAAAAGTAAAAA TGCGGG GCAA CGCGCA GGACAGCTCTCGACG SDY_1462 1345150 - 1345416 + | hypothetical protein TERM 1525 1345641 - 1345686 + T 71 -3.3 -4.88736 | overlap 1345642 AAAGCGGTTACACAT GCTGCCGGAAATCATCATT TTTTCACC AAAGCTGATTTCTGGCGGA TTTTTATCGCTGGTC TERM 1526 1345927 - 1345905 - T 86 -14.9 -2.74012 | GGATTATCTGAATCA GCTCCCCTG GATTG CAGGGGAGC GGCAAGATTAAACCA ldhA 1346924 - 1345935 - | fermentative D-lactate dehydrogenase, NAD-dependent TERM 1527 1346702 - 1346727 + g 70 -3.9 -4.66953 | opp_overlap 1346692, overlap 1346700 TGAAACCGGCACAGC GCAGGGCGATA TATT TAACGCTGTGC TTTTTCAGCTCTTCC TERM 1528 1348131 - 1348106 - g 89 -13.3 -3.39862 | ATTAAGCATGGATAA CAGCCAGCTGC CTCT GCAGCTGACCG GTGAAGCGAAACAGG ydbH 1347132 - 1349771 + | hypothetical protein ynbE 1349768 - 1349953 + | hypothetical protein ydbL 1349880 - 1350209 + | YdbL SDY_1468 1350544 - 1350939 + | iso-IS1 ORF2 TERM 1529 1350999 - 1350989 - f 70 -2.4 -4.98758 | opp_overlap 1350989 AAAAATTGAGAAAAA CAGC AAC GCGG TAATTAATAACACCG insA 1351167 - 1351442 + | IS1 ORF1 insB 1351487 - 1351864 + | IS1 ORF2 SDY_1471 1352005 - 1352562 + | hypothetical protein TERM 1530 1352905 - 1352915 + G 71 -2.4 -4.89852 | CCTCTTTTTGCTATT GCCC ATC GTGC TTTTTATCCGTATGG SDY_1472 1352732 - 1353346 + | hypothetical protein SDY_1473 1353716 - 1353321 - | iso-IS1 ORF2 TERM 1531 1354342 - 1354375 + r 80 -9.6 -3.86312 | overlap 1354345 TTGAATATATTTTTT TAGTTCGGCGGGGG AGGATA TTCCCGCCGAAATA TTATTGCTTATGCCT TERM 1532 1354345 - 1354372 + r 73 -11.3 -2.70018 | overlap 1354342 AATATATTTTTTTAG TTCGGCGGGGG AGGATA TTCCCGCCGAA ATATTATTGCTTATG aroD 1355141 - 1354383 - | 3-dehydroquinate dehydratase TERM 1533 1354436 - 1354451 + g 91 -5.4 -5.40072 | gap 1 CATTTACCGAGATTT GCC-CTG GCG CAGAGGC TTTTTTTACCGCACC ydiB 1356065 - 1355172 - | quinate/shikimate dehydrogenase TERM 1534 1355575 - 1355587 + g 70 -3.5 -4.66535 | opp_overlap 1355582 AACTCATCCCGACGG TTAAA GAG TTTAA TTTCTTTTAAACCTT SDY_1476 1356258 - 1356043 - | iso-IS1 ORF2 SDY_1477 1357176 - 1356823 - | hypothetical protein insB 1357650 - 1357273 - | IS1 ORF2 insA 1357970 - 1357695 - | IS1 ORF1 TERM 1535 1358004 - 1357987 - R 72 -4.9 -4.63527 | gap 1 GGAGCACCTCAAAAA CACCATCA TAC TGA-GGTG TACTGGCAATAGCGG SDY_1480 1358754 - 1358041 - | IS600 ORF2 SDY_1481 1359197 - 1358895 - | IS600 ORF1 insA 1359291 - 1359566 + | IS1 ORF1 SDY_1483 1360801 - 1359923 - | putative transport system permease protein TERM 1536 1360075 - 1360064 - G 70 -3.6 -4.72986 | CAGTGCCAGTAAAAA GCCG ATGG CAGC GATGGCGGTATCGAA SDY_1484 1361174 - 1360779 - | iso-IS1 ORF2 yeaF 1361643 - 1362389 + | hypothetical protein TERM 1537 1362425 - 1362441 + F 100 -13.7 -4.2803 | opp_overlap 1362425 TTTTGTGCATAAAAA CAGGGCG TCA CGCCCTG TTTTGCATTACGGTG TERM 1538 1362441 - 1362425 - f 100 -13.7 -4.82901 | opp_overlap 1362425 TTTTGTGCATAAAAA CAGGGCG TCA CGCCCTG TTTTGCATTACGGTG SDY_1486 1362479 - 1363330 + | putative aldehyde reductase yeaD 1364286 - 1363381 - | hypothetical protein TERM 1539 1364305 - 1364322 + r 95 -11.3 -4.66163 | opp_overlap 1364305 ATCAGGTAAAAAAAA GAGCGAC CGAA GTCGCTC TTTTTAGATCACAGT TERM 1540 1364322 - 1364305 - R 100 -11.3 -5.82316 | opp_overlap 1364305 ATCAGGTAAAAAAAA GAGCGAC CGAA GTCGCTC TTTTTAGATCACAGT gapA 1365344 - 1364349 - | glyceraldehyde-3-phosphate dehydrogenase A TERM 1541 1365416 - 1365400 - H 72 -2.9 -5.09245 | GTAAAATTACAAAAA CCTTACG CAG CGTCAAG CGGAATCGTGTCAAT yeaA 1365686 - 1366099 + | methionine sulfoxide reductase B SDY_1490 1366096 - 1366413 + | hypothetical protein TERM 1542 1366672 - 1366705 + F 73 -10.5 -2.95341 | opp_overlap 1366671 1366680, overlap 1366663 1366671 1366680 TAATTGTGATCTAAG TTGTAAAACACAGAT CATT ACCTGTGTTTTACAG ATTTAATGTTGACCT TERM 1543 1366901 - 1366884 - g 77 -8.3 -4.08485 | GTGATTGAAATTAAA GCCGCGG CAAT CTGCGGC GCAGACATGAAGCAC SDY_1491 1366782 - 1367858 + | putative oxidoreductase TERM 1544 1367913 - 1367903 - g 71 -2.4 -4.90002 | GAACAGATAACAAAA CCGC ATT GTGG TGCACGGCTGGATCG SDY_1492 1367885 - 1369264 + | putative transport protein ydjJ 1369320 - 1370327 + | putative oxidoreductase insA 1370959 - 1370684 - | IS1 ORF1 SDY_1495 1371015 - 1371659 + | putative kinase SDY_1496 1371669 - 1371902 + | hypothetical protein TERM 1545 1371906 - 1371892 - f 86 -4.2 -5.47821 | AGGCAGTTAAAAAAA CTGCCC CGT GAACAG GTTGTAGTAGAAACC TERM 1546 1372021 - 1371993 - f 76 -5.2 -4.84359 | GCAGTTGTATAAAAA CCTTTCCCCGGA ATCTA TCCGCGAAGAGG TAGAAGCCAGCTTGC TERM 1547 1372078 - 1372095 + G 74 -3.3 -5.0133 | ATCTATATGACGCAC TGGCAGT CGGT GCCGCCA TTTTTTACGCCGATA SDY_1497 1372033 - 1372650 + | hypothetical protein SDY_1498 1372787 - 1373545 + | putative DEOR-type transcriptional regulator SDY_1500 1374653 - 1375006 + | iso-IS1 ORF2 insA 1375040 - 1375315 + | IS1 ORF1 insB 1375360 - 1375737 + | IS1 ORF2 SDY_1503 1376355 - 1375960 - | iso-IS1 ORF2 TERM 1548 1376711 - 1376722 + G 70 -7.2 -4.03234 | overlap 1376710 AATTAGAGGCATCAC CCGC GTCG GCGG TTTATATCCCGGAGC SDY_1504 1376550 - 1376780 + | hypothetical protein ydjB 1377698 - 1377057 - | nicotinamidase/pyrazinamidase ansA 1378725 - 1377709 - | cytoplasmic asparaginase I TERM 1549 1377946 - 1377972 + g 73 -3.7 -4.77173 | overlap 1377948 AATACCGCGATCGCT GGCTTCTTGTA ATTCC TGCAGGAAGGC TTTGTTTTGTGGCGC TERM 1550 1378867 - 1378843 - R 84 -7.8 -4.8083 | overlap 1378845 GAAGAGGATTAAAAA TATGGCCGAC GATCT GTCGGCCACT CAGTACAAGACTTAA TERM 1551 1378865 - 1378845 - R 95 -12.6 -4.01045 | overlap 1378843 AGAGGATTAAAAATA TGGCCGAC GATCT GTCGGCCA CTCAGTACAAGACTT sppA 1380735 - 1378879 - | protease 4 TERM 1552 1380725 - 1380706 - G 77 -2.8 -5.08824 | overlap 1380708 CGTCCATTTAAAAAA TCCGGCAA TAAA TCGCCAAA GGGTTCGCATGTATT TERM 1553 1381008 - 1380981 - g 72 -8.3 -3.71291 | overlap 1380979 AACAACTGCAAAACA TCCTGCGTGCG GGTATG CGCGCGCCGGA CCATAAGTCCATGCA ydjA 1380896 - 1381447 + | hypothetical protein selD 1381564 - 1382607 + | selenophosphate synthetase TERM 1554 1383035 - 1382986 - g 77 -8.5 -4.13945 | gap 1, opp_overlap 1382992 1383031, overlap 1382972 1382987 ACTGGCACCGGAAAA GCGCCAGCAGGTGCAGCGTTGCTT GAT AAACGAC-CTGAACCCGCAGGCGG TTGAGCGGGCGATCG TERM 1555 1383034 - 1382987 - g 75 -12 -3.08046 | gap 1, opp_overlap 1382992 1383031, overlap 1382972 1382986 CTGGCACCGGAAAAG CGCCAGCAGGTGCAGCGTTGCTT GAT AAACGAC-CTGAACCCGCAGGCG GTTGAGCGGGCGATC TERM 1556 1383755 - 1383742 - g 74 -3.1 -4.91109 | gap 1 TTGGGATGACAAAAA GGT-CG ATG CGCACC ACGCCATCATTCCGA topB 1382612 - 1384573 + | DNA topoisomerase III SDY_1511 1384908 - 1384570 - | hypothetical protein TERM 1557 1384614 - 1384644 + g 100 -7 -5.47821 | opp_overlap 1384614 AGTCATATTCTGAAA TATCCAGCGGAT CATGAAA ATTCGTTGGATA TTTTTTTGCATGGAT TERM 1558 1384723 - 1384709 - G 79 -3.6 -5.16237 | AATGTGATGAAAAAA GTTTTA TTA CAAAAC CATCCTGGGTGCGAG TERM 1559 1384894 - 1384912 + g 75 -5.2 -4.63184 | opp_overlap 1384877, overlap 1384895 CATGACAGATTTCGC TGCCGTGA CTG TCACCGCG TTTTTCAGCTCACTT SDY_1512 1385746 - 1385351 - | iso-IS1 ORF2 SDY_1513 1386335 - 1387288 + | hypothetical protein gdhA 1388748 - 1387405 - | glutamate dehydrogenase TERM 1560 1388673 - 1388701 + g 70 -6.7 -4.12902 | gap 1 CTTCACGAACGGCTT GCGCGAACTCGG TTTGAT TCGGGT-CGCGC TTTTGGACATGGTTG TERM 1561 1389108 - 1389131 + G 93 -12.4 -3.87815 | overlap 1389098 1389127 CAGGCGGGCAGTCAG CGCAGCCCTG TACT CAGTGCTGCG TTTATCAGGATAAAA SDY_1515 1388984 - 1389256 + | hypothetical protein SDY_1516 1389629 - 1389222 - | pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase TERM 1562 1389870 - 1389887 + G 75 -5.5 -4.63218 | CGCTGGGCTGGTATC TGGCGGC GCTA GTCGTCA TTTTGTTGAACAGGC SDY_1517 1389710 - 1390177 + | putative cytochrome oxidase TERM 1563 1390306 - 1390332 + T 90 -15.2 -2.75803 | GTGTGGAGTGGGTAT CTGACGCTGAAG TCG CTCCAGCGTCAG TAATTGCAATGTTAT TERM 1564 1390371 - 1390386 + T 79 -4.6 -5.09895 | overlap 1390372 GTCCGGGCCGCGTTC ACCGGT TGCT ACCGGA TTTTTTGGATCGCTG TERM 1565 1390985 - 1391000 + T 71 -6.8 -4.08767 | opp_overlap 1390973 1390976 GAATGACCGTGGTGT CATGGC GAAT GCCGTG TTTTGCCAGCATCGC TERM 1566 1391217 - 1391237 + T 73 -4.5 -4.82901 | opp_overlap 1391219, overlap 1391219 CCATTGCGGATAAAC CAGCTGCTC AAA GTGCGGCAG TTTTTGTAGACGGGA SDY_1519 1392371 - 1391718 - | putative ATP-binding component of a transport system SDY_1520 1393931 - 1392513 - | putative transport system permease protein TERM 1567 1393185 - 1393196 + gr 74 -7.2 -4.22748 | opp_overlap 1393170 CATCAGCAGCAGGCT GGCG AGTG CGCC TTTCGTTTGTTGATC SDY_1521 1394449 - 1393880 - | hypothetical protein TERM 1568 1393997 - 1394011 + gr 81 -7.1 -4.59773 | TTGCAATGTTTCGCG CTGCC CATCA GGCAG TTTTTGCGGATCGAG TERM 1569 1394208 - 1394220 + gr 100 -9.1 -5.14965 | opp_overlap 1394208, overlap 1394195 CTGCTTGCAGGCAAA TCGCC GCT GGCGA TTTTTTGCTGCGCAT TERM 1570 1394220 - 1394208 - GR 73 -9.1 -3.64703 | opp_overlap 1394195 1394208 CTGCTTGCAGGCAAA TCGCC GCT GGCGA TTTTTTGCTGCGCAT SDY_1522 1395049 - 1394603 - | hypothetical protein TERM 1571 1394687 - 1394640 - G 72 -4.9 -4.67353 | gap 2, opp_overlap 1394639 1394675 1394679 GTAGGCACTGAAAAA TCTTCCCGCACCGGCAGCTGTGT GTCG ACATAGC-GCCAGTT-GGGCAGA GTCTCTGCCCAGTCG TERM 1572 1394675 - 1394703 + g 85 -11.7 -3.6215 | opp_overlap 1394640, overlap 1394639 1394679 TGTGTCGACATAGCG CCAGTTGGGCAGA GTC TCTGCCCAGTCGG TTTGCAGTAAATTGG TERM 1573 1394679 - 1394699 + g 73 -11.9 -2.65354 | opp_overlap 1394640, overlap 1394639 1394675 TCGACATAGCGCCAG TTGGGCAGA GTC TCTGCCCAG TCGGTTTGCAGTAAA ynjA 1395604 - 1395056 - | hypothetical protein TERM 1574 1395204 - 1395183 - G 83 -10.1 -4.11216 | GCCTGAGCGTCAAAA TGCGCAGCC AGTC GGGTGCGCA GGGCATCATCGACCG ydjZ 1396311 - 1395604 - | hypothetical protein TERM 1575 1395990 - 1395973 - G 88 -5.5 -5.24129 | gap 1, overlap 1395976 1395978 TCTGGCGATAAAAAA GCACAGCG CCG CGCCG-GC CATCGAACTGGTCCA ydjY 1397003 - 1396326 - | hypothetical protein TERM 1576 1396482 - 1396492 + g 71 -2.4 -4.92791 | GCTATCCAGACACAC CAGG CAA CCCG TTTTCTTCTCTTCTG ydjX 1397571 - 1397008 - | hypothetical protein xthA 1398544 - 1397738 - | exonuclease III TERM 1577 1399918 - 1399900 - R 72 -10.4 -2.91735 | TCAATACGCCAGAGA TGCTTAAC GGG GTTAAGCA ACGTCACGACTGGTT insA 1400677 - 1400378 - | IS1 ORF1 TERM 1578 1401339 - 1401357 + G 79 -10.2 -3.85698 | opp_overlap 1401332 CGATCACACCGGCAG CAGCGAGC TGT GCACGCTG TTTCTCGACCCGGAC SDY_1530 1400983 - 1402017 + | arginine succinyltransferase TERM 1579 1402407 - 1402433 + G 100 -14.4 -3.56821 | opp_overlap 1402381 GCGGCGAGCCTGCGA CATCGCCCGCAC GGC GTGCTGGCGGTG TTTGGGCCGTATAAT SDY_1531 1402014 - 1403015 + | putative aldehyde dehydrogenase TERM 1580 1404219 - 1404200 - g 72 -7 -4.25104 | opp_overlap 1404200 1404212 TTTCGCCCAGCAAAA CCCGGACG TTAT CGACCAGG GCGTTTTTCATAATG SDY_1532 1403484 - 1404830 + | succinylarginine dihydrolase ydjS 1404950 - 1405780 + | succinylglutamate desuccinylase TERM 1581 1405811 - 1405784 - f 78 -12.8 -2.53642 | opp_overlap 1405780 1405785 1405807, overlap 1405783 1405781 1405776 AAAATAAGCTAATAC TTACCCGCAGAA ATCT TTCTGCGGGTAT TAAGTTACCTTCTTA TERM 1582 1405785 - 1405810 + F 100 -16.3 -3.22106 | opp_overlap 1405784 1405783 1405781 1405776, overlap 1405780 1405807 AAATAAGCTAATACT TACCCGCAGAA ATCT TTCTGCGGGTA TTAAGTTACCTTCTT spy 1406110 - 1406595 + | periplasmic protein TERM 1583 1406671 - 1406617 - f 86 -12.1 -3.52779 | opp_overlap 1406619, overlap 1406619 AGCCAAAAAACTTAA GACCGCCGGTCTTGTCCACTACCTT GCAGT AATGCGGTGGACAGGATCGGCGGTT TTCTTTTCTCTTCTC TERM 1584 1406669 - 1406619 - f 93 -14.7 -3.3244 | opp_overlap 1406619, overlap 1406617 CCAAAAAACTTAAGA CCGCCGGTCTTGTCCACTACCTT GCAGT AATGCGGTGGACAGGATCGGCGG TTTTCTTTTCTCTTC TERM 1585 1406619 - 1406669 + F 100 -19.8 -5.26907 | opp_overlap 1406619 1406617 CCAAAAAACTTAAGA CCGCCGGTCTTGTCCACTACCTTG CAG TAATGCGGTGGACAGGATCGGCGG TTTTCTTTTCTCTTC SDY_1535 1406798 - 1407073 + | hypothetical protein SDY_1536 1407224 - 1407048 - | iso-IS1 ORF2 SDY_1537 1407443 - 1407243 - | iso-IS1 ORF2 SDY_1538 1407638 - 1407919 + | hypothetical protein SDY_1539 1408974 - 1408108 - | nucleotide excision repair endonuclease TERM 1586 1409132 - 1409173 + r 84 -8.7 -4.57569 | opp_overlap 1409135 1409138 1409139, overlap 1409135 1409139 ATAGTTTTGTAGATC GAATAAGGCGTTCACGCCG CATC CGGCGTGAACAAATTACTC TTTTTCGCACAATCC TERM 1587 1409170 - 1409135 - R 77 -11.2 -3.12351 | opp_overlap 1409135 1409132 1409139, overlap 1409138 1409139 GTTTTGTAGATCGAA TAAGGCGTTCACGCCG CATC CGGCGTGAACAAATTA CTCTTTTTCGCACAA TERM 1588 1409167 - 1409138 - R 72 -8.5 -3.70773 | opp_overlap 1409135 1409132 1409139, overlap 1409135 1409139 TTGTAGATCGAATAA GGCGTTCACGCCG CATC CGGCGTGAACAAA TTACTCTTTTTCGCA TERM 1589 1409166 - 1409139 - R 77 -12 -2.82142 | opp_overlap 1409139 1409135 1409132, overlap 1409138 1409135 TGTAGATCGAATAAG GCGTTCACGCCG CATC CGGCGTGAACAA ATTACTCTTTTTCGC nadE 1410031 - 1409204 - | NAD synthetase TERM 1590 1409290 - 1409306 + g 71 -3 -4.74103 | gap 1 TCTCTATTGTTCTGG CG-ACCT GTTC AGGTACG TTTTTCCCTTCCAGA TERM 1591 1409993 - 1410005 + g 72 -4.7 -4.69324 | overlap 1409994 ATTAATCTGCGGTTT TGCGC CCA GCGCC TTTATTATTTGTTGT osmE 1410233 - 1410571 + | DNA-binding transcriptional activator OsmE TERM 1592 1410606 - 1410621 + F 100 -7.5 -5.90981 | opp_overlap 1410606 GAGTAACAACGGAAA CCGGC CATTGC GCCGG TTTTTTTTGGTCTGA TERM 1593 1410621 - 1410606 - f 71 -7.5 -3.8646 | opp_overlap 1410606 GAGTAACAACGGAAA CCGGC CATTGC GCCGG TTTTTTTTGGTCTGA SDY_1542 1411099 - 1411494 + | iso-IS1 ORF2 SDY_1543 1412897 - 1411737 - | kinase fragment TERM 1594 1412569 - 1412555 - G 70 -3.6 -4.59853 | overlap 1412545 GGAATGCGGCAAAAA TTACCA CGC TGATAA TTGACGTCGGATTGG insA 1413278 - 1413553 + | IS1 ORF1 insB 1413598 - 1413975 + | IS1 ORF2 ydgC 1414088 - 1414423 + | hypothetical protein ydgB 1415142 - 1414420 - | short chain dehydrogenase TERM 1595 1414486 - 1414506 + g 77 -8.3 -4.06419 | opp_overlap 1414475 1414486 1414490 GCAACTGGTAAGTAA GTAATCGAC TAG GTCGATCAC TTCTTTCTCGCCAGG TERM 1596 1414506 - 1414486 - G 76 -10.5 -3.35867 | opp_overlap 1414486, overlap 1414475 1414490 GCAACTGGTAAGTAA GTAATCGAC TAG GTCGATCAC TTCTTTCTCGCCAGG TERM 1597 1414901 - 1414919 + g 75 -4.5 -4.81685 | opp_overlap 1414901, overlap 1414916 GCGTTATGCAAAATA GCACGCA GACCA TGGGTGC TTTTTAGTACTTCAT SDY_1548 1416561 - 1415179 - | putative arginine/ornithine antiporter TERM 1598 1416148 - 1416136 - G 73 -4.1 -4.77036 | GCGCAGGATCAAAAA GTGAA CAA TCCAC AATAAAGCCGATGCA TERM 1599 1416726 - 1416710 - R 83 -10.8 -3.81062 | opp_overlap 1416710, overlap 1416703 ACTAAAAATGCGAAA GGCGGC ATCAA GCCGCC TTATAGGAGTAACTG TERM 1600 1416710 - 1416726 + r 77 -10.8 -3.31461 | opp_overlap 1416710 1416703 ACTAAAAATGCGAAA GGCGGC ATCAA GCCGCC TTATAGGAGTAACTG SDY_1549 1417691 - 1416747 - | hypothetical protein TERM 1601 1416781 - 1416816 + g 73 -12 -2.72855 | gap 1, overlap 1416771 CTGACGGTCAGGTTA TTACCACGTT-CCTGCC ACT GGCGGGTGATGTGGTAA TACTTAGCACCTTTC TERM 1602 1417890 - 1417856 - H 74 -3.6 -5.03314 | overlap 1417858 TCTATGCTTAAAAAA CAGCCGTATCAGCA TCATTAC TACTGAAACAACTG AATTGTATAAGTTAA pntA 1418215 - 1419747 + | NAD(P) transhydrogenase subunit alpha TERM 1603 1419876 - 1419902 + G 74 -5.8 -4.57073 | overlap 1419877 ACTTCGGTATCGCCG GGATGGCGATTG CGC TAATCGCCACCA TTTTTGGACCGGATA pntB 1419758 - 1421146 + | pyridine nucleotide transhydrogenase TERM 1604 1421149 - 1421174 + T 95 -13.3 -3.69068 | overlap 1421147 1421150 GAAAGCTCTGTAACC CTGACGGCCTC TGCG GAGGCCGTCAC TCTTTATTGAGATCG TERM 1605 1421150 - 1421173 + T 100 -16.8 -2.80958 | overlap 1421149 1421147 AAAGCTCTGTAACCC TGACGGCCTC TGCG GAGGCCGTCA CTCTTTATTGAGATC tqsA 1422205 - 1421171 - | putative transport protein TERM 1606 1421336 - 1421321 - G 74 -3.2 -5.00765 | overlap 1421323 AATCAACGACAAAAA TACCAC CAAT GTGGAA AGACCCAGCCCACGC TERM 1607 1422495 - 1422505 + H 74 -8.2 -3.92804 | overlap 1422494 AGGTGAGCAGCACTG GCGC AAC GCGC TTTAGTCCTTTCTTC TERM 1608 1422792 - 1422780 - g 90 -4.7 -5.40072 | opp_overlap 1422781, overlap 1422781 TCGCCGTTAAAAAAA TCGCC TTA GGCGT AGCTTATGCGCTGTG TERM 1609 1422791 - 1422781 - g 72 -8.2 -3.83561 | opp_overlap 1422781, overlap 1422780 CGCCGTTAAAAAAAT CGCC TTA GGCG TAGCTTATGCGCTGT SDY_1553 1422617 - 1422982 + | multidrug efflux system protein MdtJ SDY_1554 1422969 - 1423298 + | multidrug efflux system protein MdtI TERM 1610 1423296 - 1423336 + T 86 -9.1 -4.40561 | gap 1, opp_overlap 1423303 1423305, overlap 1423296 1423305 ATGGTGAAACTTACC TGATGAAGACGCTGCCCG CGCTGT CGGGCAGCGT-TTGAACA TTATTTTTGCGACAG TERM 1611 1423330 - 1423303 - T 81 -12.7 -3.1706 | opp_overlap 1423296 1423296 1423305, overlap 1423305 AACTTACCTGATGAA GACGCTGCCCG CGCTGT CGGGCAGCGTT TGAACATTATTTTTG TERM 1612 1423328 - 1423305 - T 100 -15.3 -3.14602 | opp_overlap 1423296 1423296 1423305, overlap 1423303 CTTACCTGATGAAGA CGCTGCCCG CGCTGT CGGGCAGCG TTTGAACATTATTTT TERM 1613 1423305 - 1423328 + T 100 -15.3 -3.65722 | opp_overlap 1423305 1423303, overlap 1423296 1423296 CTTACCTGATGAAGA CGCTGCCCG CGCTGT CGGGCAGCG TTTGAACATTATTTT SDY_1555 1424158 - 1423337 - | hypothetical protein TERM 1614 1424389 - 1424359 - R 76 -11.9 -2.71924 | opp_overlap 1424357 1424360, overlap 1424358 TACCCTCCGCTAAAG GCGGTGCTAAACG TTACC CGCTTAGCACCGT AATTTTCAGGCGCGA TERM 1615 1424360 - 1424388 + r 82 -13.2 -3.08032 | opp_overlap 1424359 1424358, overlap 1424357 ACCCTCCGCTAAAGG CGGTGCTAAACG TTACC CGCTTAGCACCG TAATTTTCAGGCGCG asr 1424742 - 1424434 - | acid shock protein precursor TERM 1616 1424582 - 1424592 + g 72 -6.8 -4.17477 | overlap 1424565 1424562 GCCTGCGCTTTCTGG GCAG GTG CTGC TTTATGCTGTTTTTT SDY_1557 1425233 - 1424988 - | hypothetical protein SDY_1558 1425468 - 1425824 + | iso-IS1 ORF2 TERM 1617 1425936 - 1425901 - T 78 -12.1 -3.09516 | gap 2, opp_overlap 1425901, overlap 1425904 GGTTTGAGCAGGCAA TAAGTCCGGAC-G-GGT ATTT ACCGCAGTCCGGACTTA TTTTTCAGGCGTGCA TERM 1618 1425901 - 1425936 + T 100 -12.1 -4.58395 | gap 2, opp_overlap 1425901 1425904 GGTTTGAGCAGGCAA TAAGTCCGGAC-G-GGT ATTT ACCGCAGTCCGGACTTA TTTTTCAGGCGTGCA TERM 1619 1425933 - 1425904 - T 76 -9.4 -3.69395 | gap 2, opp_overlap 1425901, overlap 1425901 TTGAGCAGGCAATAA GTCCGGAC-G-GGT ATTT ACCGCAGTCCGGAC TTATTTTTCAGGCGT ynfM 1427192 - 1426119 - | putative transport protein insB 1427626 - 1428003 + | IS1 ORF2 TERM 1620 1428133 - 1428158 + G 76 -11.1 -3.34398 | overlap 1428132 GCGGAAGAGCTGCAT TTCGGGCGCGC CGCT GCCCGCCTGAA TATTTCGCAACCGCC ynfL 1428076 - 1428969 + | putative transcriptional regulator LYSR-type TERM 1621 1429366 - 1429392 + G 70 -4.4 -4.4773 | overlap 1429368 1429388 AAGCCTGGCACTATC TTTCTCTGCG CATTAGT CGCGGGGAGA TTTTCCTTGCTCTGC TERM 1622 1429660 - 1429671 + G 72 -7.2 -4.19624 | opp_overlap 1429660 CTCTGGAGCAGCATA CCGG CGTT CCGG TTTATATTCAGCATG mlc 1429104 - 1430324 + | putative NAGC-like transcriptional regulator SDY_1563 1430449 - 1431144 + | putative dithiobiotin synthetase SDY_1564 1432434 - 1431097 - | putative voltage-gated ClC-type chloride channel ClcB TERM 1623 1431185 - 1431215 + g 77 -9.7 -3.64599 | opp_overlap 1431188, overlap 1431188 ACGCAGGCAATCAAT AAACCGGGGAGTA GCTGA TACTCCCCGGTCA TTTCACATATCATCA TERM 1624 1431188 - 1431212 + g 95 -15.8 -2.93585 | opp_overlap 1431188, overlap 1431185 CAGGCAATCAATAAA CCGGGGAGTA GCTGA TACTCCCCGG TCATTTCACATATCA TERM 1625 1431212 - 1431188 - G 100 -15.8 -4.33621 | opp_overlap 1431188 1431185 CAGGCAATCAATAAA CCGGGGAGTA GCTGA TACTCCCCGG TCATTTCACATATCA TERM 1626 1432185 - 1432161 - G 78 -5.6 -4.73613 | gap 1, overlap 1432163 CCATCAGCAACAAAA CCGCCGC-CAG TCCG CCGAGCGCCGG AGTTAGCAGCCGTCG TERM 1627 1432571 - 1432559 - R 70 -9.1 -3.41073 | overlap 1432557 GATCCTATCGAAACA GCGGT TTA ACCGC GACAGGAATTAACAG TERM 1628 1432693 - 1432681 - R 76 -4.8 -4.82518 | AAAACATCAAGAAAA CGTG TTGAC CACG GAAAAAGGTGCCATG TERM 1629 1433011 - 1432986 - R 71 -6.9 -4.07885 | gap 1, opp_overlap 1432987 1432988, overlap 1432987 CACTGTGTCTGAAAA GCCGTCACCAGC GGC GCTAATGACG-C TTCTGGTAGAGACCA TERM 1630 1433086 - 1433065 - R 73 -10.9 -2.74012 | gap 1, opp_overlap 1433068, overlap 1433067 TGAGTACCGCAACCA GAG-GTGCGG CTT CCGCACTCTC TGGAGCGTAATAAAA TERM 1631 1433068 - 1433082 + r 74 -11.4 -2.8805 | opp_overlap 1433067 1433065 GTACCGCAACCAGAG GTGCGG CTT CCGCAC TCTCTGGAGCGTAAT TERM 1632 1433124 - 1433102 - R 93 -9.8 -4.65916 | overlap 1433116 TGGAGCGTAATAAAA CAGCGCGC CCAACAC GCGCGCCG CAACAGAAAAATTAT TERM 1633 1433197 - 1433178 - R 72 -9.2 -3.6106 | opp_overlap 1433177 1433179, overlap 1433179 CCTAACATCCTGAAA TGTGCGGG TTGC CCCGCACT AATTTGTTAACCTGC TERM 1634 1433196 - 1433179 - R 79 -12.7 -2.76315 | opp_overlap 1433177 1433179, overlap 1433178 CTAACATCCTGAAAT GTGCGGG TTGC CCCGCAC TAATTTGTTAACCTG TERM 1635 1433179 - 1433196 + r 80 -12.7 -3.10958 | opp_overlap 1433179 1433178, overlap 1433177 CTAACATCCTGAAAT GTGCGGG TTGC CCCGCAC TAATTTGTTAACCTG SDY_1566 1434058 - 1433204 - | putative DMSO reductase anchor subunit TERM 1636 1433694 - 1433680 - G 78 -7.8 -4.3586 | TCATCCAGACGAAAA TGACGC CGA GCGCCA TGCTGACAAGTAACC TERM 1637 1433937 - 1433951 + g 72 -5.7 -4.56597 | overlap 1433935 CCACGAACAATGTGC TGACG GTCTG CGTCA TTTTTGGCGGCGAAC SDY_1567 1434677 - 1434060 - | putative oxidoreductase, Fe-S subunit TERM 1638 1435119 - 1435134 + r 79 -4 -5.15969 | TATACGCAGGAAGGG GATGGA TAAT TTCATC TTTTTTCAATTCCCA TERM 1639 1435240 - 1435272 + r 82 -2.8 -5.45652 | overlap 1435266 TGGATCTTCACGGAA TGCGCGGAA-AGCGAC GTA GT-GTTCTTCCGGGCA TTTTTTCTTAAAGAT TERM 1640 1435734 - 1435717 - R 76 -4.1 -4.93296 | opp_overlap 1435711 1435717 GTAGCACCATAAAAA CTTGATG GGGA CATCCAG TTTTTCTTTTCCACG TERM 1641 1435717 - 1435734 + r 86 -4.1 -5.45802 | opp_overlap 1435717, overlap 1435711 GTAGCACCATAAAAA CTTGATG GGGA CATCCAG TTTTTCTTTTCCACG TERM 1642 1437750 - 1437776 + r 82 -3.1 -5.54192 | gap 1 CGACAAAATGACCAT TGGG-ATCTTTA CGCT TATAGATACCCA TTTTTTTCAGTTCGT TERM 1643 1438545 - 1438558 + r 72 -5.9 -4.47328 | overlap 1438544 TTGCGAAGCCCACTG CGGCG TTTT CGCTG TTTTATCGTCACCTT TERM 1644 1439755 - 1439731 - R 75 -9.9 -3.59262 | opp_overlap 1439732, overlap 1439732 TGTTATATGTTCAAA TCGCCGGATGC GTC GTATCCGGCGT TCAGTCGATAATGTA TERM 1645 1439732 - 1439754 + r 93 -15.6 -3.08642 | opp_overlap 1439732 1439731 GTTATATGTTCAAAT CGCCGGATGC GTC GTATCCGGCG TTCAGTCGATAATGT TERM 1646 1439754 - 1439732 - R 81 -13.4 -2.75343 | opp_overlap 1439732, overlap 1439731 GTTATATGTTCAAAT CGCCGGATGC GTC GTATCCGGCG TTCAGTCGATAATGT SDY_1570 1440118 - 1439771 - | hypothetical protein ynfC 1440184 - 1440894 + | hypothetical protein SDY_1573 1441246 - 1441019 - | hypothetical protein SDY_1572 1440894 - 1441106 + | hypothetical protein SDY_1574 1441441 - 1441836 + | iso-IS1 ORF2 SDY_1576 1442607 - 1442266 - | hypothetical protein SDY_1577 1442742 - 1443068 + | hypothetical protein SDY_1580 1445609 - 1445214 - | iso-IS1 ORF2 SDY_1581 1445804 - 1446061 + | hypothetical protein SDY_1582 1446435 - 1447718 + | putative transport protein TERM 1647 1447727 - 1447750 + T 100 -9.6 -5.16841 | TCTGTAAATCCTCAA TCCCTTCTCT TACC GGAGAGGGGA TTTTTCTTCATATAA TERM 1648 1449296 - 1449273 - T 100 -11.8 -5.63103 | gap 1, overlap 1449277 CGTGAAGTAAAAAAA GCAATGCCGCC ATC GGCGGCATT-C ACACGCTTAGTTCAT TERM 1649 1449293 - 1449277 - T 100 -13.7 -4.07651 | overlap 1449273 AAGTAAAAAAAGCAA TGCCGCC ATC GGCGGCA TTCACACGCTTAGTT SDY_1584 1449506 - 1449303 - | hypothetical protein TERM 1650 1449674 - 1449651 - R 90 -13.2 -3.63922 | overlap 1449638 1449649 AGGCGGGGGAAAAGA CTCTCACCCC GGAT GGGATGAGAG GAAATGAATTACTCT ydfH 1450369 - 1449683 - | hypothetical protein TERM 1651 1450449 - 1450432 - R 84 -10.5 -3.8591 | TGTGACAAGCAATAA CCCGGCA GTTA CGCCGGG TATAAAAATTACTGA ydfG 1451204 - 1450458 - | 3-hydroxy acid dehydrogenase dcp 1451341 - 1453386 + | dipeptidyl carboxypeptidase II TERM 1652 1453435 - 1453388 - T 74 -7.1 -4.2074 | gap 2, opp_overlap 1453394 1453398, overlap 1453390 1453397 1453398 GCTTGAACATATAAA CACCACCAATGGCTGGACTGGAG ATAT CGCCAGTCCAGCC--TGGTTATA GCAGTAATTGCAGCA TERM 1653 1453394 - 1453430 + T 82 -11.6 -3.32268 | gap 1, opp_overlap 1453390 1453388 1453397 1453398, overlap 1453398 ACATATAAACACCAC CAATGGCTGGACTGGAG ATAT CGCCAGTCCAGCC-TGG TTATAGCAGTAATTG TERM 1654 1453428 - 1453397 - T 93 -14.4 -3.31691 | opp_overlap 1453394 1453398, overlap 1453390 1453388 1453398 TATAAACACCACCAA TGGCTGGACTGGAG ATAT CGCCAGTCCAGCCT GGTTATAGCAGTAAT TERM 1655 1453427 - 1453398 - T 100 -17.9 -2.58292 | opp_overlap 1453394 1453398, overlap 1453397 1453390 1453388 ATAAACACCACCAAT GGCTGGACTGGAG ATAT CGCCAGTCCAGCC TGGTTATAGCAGTAA TERM 1656 1453398 - 1453427 + T 100 -17.9 -2.83271 | opp_overlap 1453398 1453397 1453390 1453388, overlap 1453394 ATAAACACCACCAAT GGCTGGACTGGAG ATAT CGCCAGTCCAGCC TGGTTATAGCAGTAA ydeJ 1453949 - 1453431 - | competence damage-inducible protein A TERM 1657 1454330 - 1454303 - g 74 -7.6 -4.07885 | overlap 1454306 CAGGGCGGTTTAAAA CAGGATGCAGCG CCAC CGCCGCCTCATG CAATAGAAGATGGCT ydeI 1454225 - 1454617 + | hypothetical protein ydeH 1454872 - 1455762 + | hypothetical protein TERM 1658 1455880 - 1455897 + F 100 -10.5 -5.42259 | CCATGCAAGCATTCA CCGCCGG TTTA CTGGCGG TTTTTTTCGCCGTCA TERM 1659 1455955 - 1455919 - f 100 -10.2 -4.82901 | gap 1, opp_overlap 1455920, overlap 1455920 1455922 TCGCCGTCATAAAAA TCAGGCCCCTTG-TACA CAAC TGTAACAAGGGGCCGGT TAGGTGAGGGATTAT TERM 1660 1455954 - 1455920 - f 93 -13.7 -3.49419 | gap 1, opp_overlap 1455920, overlap 1455919 1455922 CGCCGTCATAAAAAT CAGGCCCCTTG-TACA CAAC TGTAACAAGGGGCCGG TTAGGTGAGGGATTA TERM 1661 1455920 - 1455954 + F 85 -13.7 -3.06133 | gap 1, opp_overlap 1455919 1455920 1455922 CGCCGTCATAAAAAT CAGGCCCCTTG-TACA CAAC TGTAACAAGGGGCCGG TTAGGTGAGGGATTA TERM 1662 1455952 - 1455922 - f 93 -14.9 -3.31915 | gap 1, opp_overlap 1455920, overlap 1455920 1455919 CCGTCATAAAAATCA GGCCCCTTG-TACA CAAC TGTAACAAGGGGCC GGTTAGGTGAGGGAT insA 1456170 - 1456445 + | IS1 ORF1 insB 1456490 - 1456867 + | IS1 ORF2 TERM 1663 1457003 - 1456987 - T 72 -5.7 -4.40298 | opp_overlap 1456988, overlap 1456988 ACTTAAATCAACAAA GCGCGGG CTG CCCCCAC GGTTTTGCACGAATC ydeF 1458166 - 1456979 - | putative MFS-type transporter YdeE TERM 1664 1458483 - 1458504 + G 84 -3.6 -5.24129 | overlap 1458485 CGGTTTGCGCTTTAT GCTGGTCG CTTTTC CGGCCATC TTTTTTGTCGCACGA TERM 1665 1458663 - 1458675 + G 70 -6.9 -4.08485 | GGCGTTTTTTACTAT CGTGC TTG GCGCG TTTACTTTCGGTGAG TERM 1666 1458719 - 1458730 + G 77 -5.8 -4.63527 | opp_overlap 1458710 AACAATTGGCGGGGA TCGC CTTA GCGA TTTTTGGCGTAGTGG ydeD 1458361 - 1459260 + | O-acetylserine/cysteine export protein TERM 1667 1459412 - 1459367 - T 72 -8.3 -3.65902 | gap 1, overlap 1459372 1459401 1459404 1459409 CCCATGTGATTTAAA TCGA-ACGGTGGTTGTTCCTGC GAT GGGGGAACAACCACCACATCGC CACAGGAAGTAACGA TERM 1668 1459406 - 1459372 - T 86 -13.6 -3.29324 | overlap 1459367 1459401 1459404 GTGATTTAAATCGAA CGGTGGTTGTTCCTGC GAT GGGGGAACAACCACCA CATCGCCACAGGAAG marA 1459923 - 1459540 - | DNA-binding transcriptional activator MarA TERM 1669 1459585 - 1459573 - G 72 -4.7 -4.68424 | TAATGGATGTAAAAA GCGCG ATT CGCCC TGCATATTGGTCATC marR 1460377 - 1459943 - | DNA-binding transcriptional repressor MarR ydeB 1460589 - 1461254 + | multiple drug resistance protein MarC TERM 1670 1461272 - 1461259 - T 100 -9.5 -5.1861 | opp_overlap 1461259 CGTATCATTAAAAAA GGCCC GAAT GGGCC TTTCAACTATTGCGT TERM 1671 1461259 - 1461272 + T 79 -9.5 -3.6707 | opp_overlap 1461259 CGTATCATTAAAAAA GGCCC GAAT GGGCC TTTCAACTATTGCGT ydeA 1462337 - 1461279 - | sugar efflux transporter SDY_1600 1462623 - 1462384 - | hypothetical protein SDY_1601 1462818 - 1463213 + | iso-IS1 ORF2 SDY_1602 1463442 - 1463188 - | hypothetical protein TERM 1672 1463753 - 1463781 + r 100 -13.9 -4.07687 | opp_overlap 1463756, overlap 1463756 CGGAATTTATCTGAT TAACTGTCGGGCC GTA GACCCGGCAGTTA TTTTAACCACGACGT TERM 1673 1463756 - 1463778 + r 89 -11.2 -4.17048 | opp_overlap 1463756, overlap 1463753 AATTTATCTGATTAA CTGTCGGGCC GTA GACCCGGCAG TTATTTTAACCACGA TERM 1674 1463778 - 1463756 - R 77 -11.2 -3.1706 | opp_overlap 1463756 1463753 AATTTATCTGATTAA CTGTCGGGCC GTA GACCCGGCAG TTATTTTAACCACGA yddG 1464665 - 1463784 - | hypothetical protein TERM 1675 1465118 - 1465106 - H 72 -2.6 -5.02074 | overlap 1465116 TGATGGCGCAAAAAA CGCC AGAGA AGCG ATTTATCACATTGAA TERM 1676 1465671 - 1465643 - H 84 -7.6 -4.75174 | gap 1 GATGGAAGCGAAAAA CAACAACGATGCA ACCT TG-ATCGTTGTCG ATCCCCGTTTTACGC TERM 1677 1465832 - 1465817 - H 70 -9 -3.31157 | opp_overlap 1465814 1465811 TAAGCATTACACCAA CACCAG CCTG CTGGTG CGTGATGATTTTGCT TERM 1678 1468755 - 1468743 - g 71 -9.1 -3.5394 | opp_overlap 1468742 1468745, overlap 1468732 AAAGGCGCGTTGAAA CCGCT GGC AGCGG CTGGCTTTATTGCCA fdnH 1467969 - 1468853 + | formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit fdnI 1468846 - 1469499 + | formate dehydrogenase-N subunit gamma TERM 1679 1469519 - 1469550 + T 84 -13.9 -2.78463 | opp_overlap 1469525, overlap 1469525 TTTTGAACTTTAAGC TGAAAATGGCGCT GTAAAA GGCGCCATTTTCA TATAGTAGACAACGT TERM 1680 1469525 - 1469544 + T 74 -7.1 -4.371 | opp_overlap 1469525, overlap 1469519 ACTTTAAGCTGAAAA TGGCGCT GTAAAA GGCGCCA TTTTCATATAGTAGA TERM 1681 1469703 - 1469722 + T 91 -6.4 -5.4833 | GTCATCAGTTTCAAA TGGCGCTT TATA AGGTGCCA TTTTTTATTGCGTAA yddM 1470089 - 1469727 - | hypothetical protein adhP 1471168 - 1470071 - | alcohol dehydrogenase TERM 1682 1471296 - 1471271 - H 74 -11.1 -2.83071 | opp_overlap 1471280, overlap 1471270 AAGGGAGAGGGAAAT TGCCCGGTAGC CTTC ACTACCGGGCG CAGGCTTAGATGGAG TERM 1683 1472640 - 1472619 - H 100 -13.1 -5.71295 | opp_overlap 1472619 AGATAAAAACAAAAA CACCATTGC GCAG GCAATGGTG TTTAATCGTCATTGA TERM 1684 1472619 - 1472640 + H 95 -13.1 -3.82031 | opp_overlap 1472619 AGATAAAAACAAAAA CACCATTGC GCAG GCAATGGTG TTTAATCGTCATTGA osmC 1472720 - 1473151 + | osmotically inducible protein TERM 1685 1473167 - 1473194 + T 86 -11.3 -3.67558 | AGCGTTGCCGGATGA CGCGTCAGGCG CGTGAA TGCCTGATGCG TTGTTAGCATCTCTA SDY_1611 1474133 - 1473207 - | putative ATP-binding component of a transport system TERM 1686 1473323 - 1473313 - G 71 -2.4 -5.00616 | opp_overlap 1473321 CGTTCGCGGAAAAAA CAGC CTT GCGG CAACGTGCGGTTTCC TERM 1687 1475280 - 1475270 - R 74 -6.8 -4.27062 | GGAATCAAAACGAAA CGCA ACG TGCG AGATCGACTAACTGC TERM 1688 1475480 - 1475442 - R 73 -10.4 -3.07962 | opp_overlap 1475451, overlap 1475451 TGGGATATTTCAAGA GGGTAACAAGCCAGTG GGTAAAG CACTGGCTTGTTACAA AGTAAAAATGGGAGT TERM 1689 1475471 - 1475451 - R 72 -8.3 -3.68302 | opp_overlap 1475451, overlap 1475442 TCAAGAGGGTAACAA GCCAGTG GGTAAAG CACTGGC TTGTTACAAAGTAAA SDY_1613 1476815 - 1475496 - | hypothetical protein TERM 1690 1476898 - 1476920 + r 100 -14.2 -3.75378 | opp_overlap 1476898 AGCAAGCACGAAAAA GGGAGCGATG AAT TATCGCTCCC TTATCTTATAACCAT TERM 1691 1476920 - 1476898 - R 100 -13.5 -4.81685 | opp_overlap 1476898 AGCAAGCACGAAAAA GGGAGCGAT GAATT ATCGCTCCC TTATCTTATAACCAT xasA 1478481 - 1476946 - | acid sensitivity protein, putative transporter TERM 1692 1478348 - 1478331 - G 75 -5.5 -4.67256 | GAATAAACCATAAAA TCCCGCC TAAT AGCAGGA AGAAGACTAATGAAA TERM 1693 1478523 - 1478551 + r 76 -7.6 -4.30416 | overlap 1478525 TCGGAACCGCACCTG TTTTGTTCTGAA GCGTA TTCAGAACAATA TTTTCCGTTGCTAAT TERM 1694 1478525 - 1478549 + r 83 -10.2 -3.75051 | overlap 1478523 GGAACCGCACCTGTT TTGTTCTGAA GCGTA TTCAGAACAA TATTTTCCGTTGCTA TERM 1695 1478618 - 1478589 - R 100 -15.1 -3.57387 | opp_overlap 1478593 1478595, overlap 1478590 AACAGACTTTGGAAA TTGTCCCGAAACG GGTT CGTTTCGGGACAC CGTTACCGTTAAACG TERM 1696 1478617 - 1478590 - R 100 -18.6 -2.7395 | opp_overlap 1478593 1478595, overlap 1478589 ACAGACTTTGGAAAT TGTCCCGAAACG GGTT CGTTTCGGGACA CCGTTACCGTTAAAC gadB 1480037 - 1478637 - | glutamate decarboxylase isozyme insA 1480357 - 1480632 + | IS1 ORF1 insB 1480677 - 1481054 + | IS1 ORF2 SDY_1618 1481079 - 1481507 + | hypothetical protein TERM 1697 1481517 - 1481541 + F 73 -9.9 -3.36452 | opp_overlap 1481517 1481514 1481509 TGGTAAACAGTATAA GCCGCATGTCG AGA TGGCCTGCGGC TTAATATTGCCAACT SDY_1619 1482022 - 1482285 + | hypothetical protein insA 1482640 - 1482915 + | IS1 ORF1 insB 1482960 - 1483337 + | IS1 ORF2 SDY_1622 1483733 - 1484128 + | iso-IS1 ORF2 yneB 1484106 - 1484918 + | aldolase SDY_1624 1484942 - 1485232 + | autoinducer-2 (AI-2) modifying protein LsrG SDY_1625 1485289 - 1486047 + | trans-aconitate 2-methyltransferase SDY_1626 1486698 - 1486051 - | hypothetical protein TERM 1698 1486638 - 1486658 + g 74 -6.2 -4.44608 | gap 1, overlap 1486638 1486641 GGGCAAACTCCCTTA CACTTGCCG AATC CGGCAA-TG TTGTTTTTACCTCGC TERM 1699 1486641 - 1486656 + g 76 -9 -3.82353 | overlap 1486638 1486638 CAAACTCCCTTACAC TTGCCG AATC CGGCAA TGTTGTTTTTACCTC SDY_1627 1487015 - 1486698 - | hypothetical protein TERM 1700 1486782 - 1486769 - G 79 -2.3 -5.28166 | GAAAACCAAGAAAAA TGGCG ATGG CGACA CCGAGAATGCTGAAC TERM 1701 1487090 - 1487057 - R 93 -11.9 -3.72405 | opp_overlap 1487063, overlap 1487051 CCTACAAAATTACAA CATTAACAGGCGC TGCATGTG GCACCTGTTAATG ATAAAGGCTCATAGG TERM 1702 1487151 - 1487136 - R 93 -10.4 -4.42721 | TAATGACATAAGAAA CCCGGT CGAA ACCGGG TTCAGAGTGTTAGCA TERM 1703 1487315 - 1487292 - R 71 -6.8 -4.17048 | gap 1 TTTCTGCCAAAACAA TCGCTA-CCAG TTC CTGGGTAACGA TAACACGGTCACGAT SDY_1629 1490177 - 1488678 - | hypothetical protein TERM 1704 1489460 - 1489423 - G 70 -9.9 -3.14404 | overlap 1489426 ATATCAATCACCGAA TTAGCCACCAGTACGAT TTCC ACCGCACCGGTGACAAA GGTCAACAGACATGT TERM 1705 1489457 - 1489426 - G 73 -11.6 -2.77235 | overlap 1489423 TCAATCACCGAATTA GCCACCAGTACGAT TTCC ACCGCACCGGTGAC AAAGGTCAACAGACA TERM 1706 1490118 - 1490108 - G 75 -5.4 -4.62069 | opp_overlap 1490108 TGGTTAGCGCAAAAA TAGC GAT GCTA TTACGTAGCAGATGA SDY_1630 1490675 - 1490316 - | hypothetical protein TERM 1707 1490449 - 1490431 - G 82 -11.7 -3.524 | CACTTAGCCAGACAA CCGCGAC AGCAG GTCGCGG TGGCGTGCTGAGCGA yneH 1491601 - 1490675 - | glutaminase TERM 1708 1491616 - 1491640 + r 72 -10.8 -2.87931 | gap 1 CTTTCTACTCCTGGA C-CGCAGGTCT GAAA AGACCTGCGAG TATATCAGAGCTAAA SDY_1632 1493077 - 1491665 - | putative aldehyde dehydrogenase TERM 1709 1492065 - 1492077 + g 86 -9.1 -4.3898 | opp_overlap 1492060 1492059 AGTAACAAACGCGCA CCCTG CGC CAGGG TTTTCTCCACCTGAT TERM 1710 1493529 - 1493551 + G 85 -14.2 -2.78384 | overlap 1493510 TCACTTTCCACCGGC CCTTCCGGCA CTA TGCTGGAAGG TGTGCTGGAGGGAAA yneJ 1493154 - 1494035 + | putative transcriptional regulator LYSR-type SDY_1634 1494113 - 1494754 + | hypothetical protein SDY_1635 1495146 - 1494751 - | iso-IS1 ORF2 TERM 1711 1495902 - 1495883 - g 71 -2.9 -4.81082 | gap 1, opp_overlap 1495884 1495885, overlap 1495884 1495885 AAGGAATGAATAAAA GCTGGAAG GATCA CTTCCA-C TATTTGCTGATGCCG SDY_1636 1495597 - 1496088 + | hypothetical protein TERM 1712 1496097 - 1496138 + F 90 -14.6 -3.12351 | gap 1, opp_overlap 1496089, overlap 1496097 AACGTAATAGTCGGA TG-CGCGCCGCATTATCCT GCCTG AGGGTAATGCGCCGCGCCA TTAACTATAAAAAGA ymjA 1496222 - 1496467 + | hypothetical protein TERM 1713 1496676 - 1496644 - f 100 -15.7 -3.16039 | opp_overlap 1496653, overlap 1496631 AATCACGGGTACGAA TGTTGAACAGATGGC GAC GCCACCTGTTCAACG ACCAACCACACGGCC TERM 1714 1496872 - 1496883 + G 81 -7.2 -4.68545 | overlap 1496876 CCCGCATGCTGATAT CCGC GACA GCGG TTTTGTCTATTGCGT sapA 1496780 - 1498423 + | SapA sapB 1498420 - 1499385 + | hypothetical protein TERM 1715 1499482 - 1499509 + T 100 -16.4 -3.71552 | overlap 1499484 CACTGATTGTACTGT TATGCCCCGTAC AAAA GTACGGGGCATG TTCTGTTACTCCACT TERM 1716 1499484 - 1499507 + T 100 -16.8 -3.43722 | overlap 1499482 CTGATTGTACTGTTA TGCCCCGTAC AAAA GTACGGGGCA TGTTCTGTTACTCCA SDY_1640 1504281 - 1499515 - | hypothetical protein TERM 1717 1500705 - 1500730 + g 74 -6.1 -4.56775 | overlap 1500708 GCGCTCCCTGCTCAC CACGACGGTTA AAGT TCACCGTCATG TTTTTGGCAAGAGAT SDY_1641 1504709 - 1504482 - | hypothetical protein SDY_1642 1505105 - 1504710 - | iso-IS1 ORF2 SDY_1643 1506098 - 1505457 - | hypothetical protein SDY_1644 1506137 - 1506439 + | IS600 ORF1 SDY_1645 1507735 - 1506830 - | insertion element IS2 transposase InsD SDY_1646 1508058 - 1507693 - | insertion sequence 2 OrfA protein TERM 1718 1508957 - 1508979 + r 72 -8.5 -3.79021 | gap 1 CTGCTGTTCCTTACC TTACCGG-GC ACAG GCTCCGGTAA TTTCATCGCCTTTTA TERM 1719 1509156 - 1509134 - R 88 -12.6 -3.60412 | opp_overlap 1509122 CAAGCTCAGAGAGAA GCCGTCACCG AAA CGGCGGCGGC TCTGAGCTTTATCTC TERM 1720 1509179 - 1509193 + r 72 -2.7 -5.06414 | TTTATCTCAGCCATT GGCGC AGTGA GCGGC TTTTTATTCCGCAGG TERM 1721 1509717 - 1509698 - R 74 -10.6 -3.27298 | opp_overlap 1509692 CTGCCCAATCATGAA CCTCGCGG CTGC CCGCGTGG CGCAAGTTACTCCTG TERM 1722 1510348 - 1510328 - R 87 -9.7 -4.25104 | opp_overlap 1510347, overlap 1510331 TGGCTGGCACCAAAA CAAGGCACT GAT AGCGCCCTG GCAATGGGCCATGTG TERM 1723 1510345 - 1510331 - R 76 -7.8 -4.25256 | overlap 1510328 CTGGCACCAAAACAA GGCACT GAT AGCGCC CTGGCAATGGGCCAT TERM 1724 1510638 - 1510612 - R 73 -4.5 -4.82901 | gap 1 CGCTGGGGAGAAAAA GGCAAATGGAAT CTGG AATCCATT-GCC GCCGGTAAGGAAACC SDY_1649 1511822 - 1511427 - | iso-IS1 ORF2 SDY_1650 1512017 - 1512244 + | hypothetical protein TERM 1725 1512541 - 1512554 + F 72 -6.7 -4.25458 | opp_overlap 1512532 ACGATATGAATACCT CGGAT ATGC ATCCG TTTATTCATCCGCTT TERM 1726 1513977 - 1513963 - g 75 -5.6 -4.59773 | GGTGACCTGTAAAAA CGTCTG GAC CGGACG CGAAGGCATGGAGTA narY 1513880 - 1515403 + | cryptic nitrate reductase 2, beta subunit narW 1515403 - 1516098 + | cryptic nitrate reductase 2, delta subunit, assembly function narV 1516095 - 1516775 + | cryptic nitrate reductase 2, gamma subunit yddE 1516855 - 1517748 + | hypothetical protein TERM 1727 1517834 - 1517796 - f 73 -10.3 -3.10905 | gap 1, overlap 1517800 1517810 CTACAACCGAGCTAA TGTATGCCGGATAAGGCG TTTA CGCCGCATCCGGCA-ACC TGACATAAATTATTT TERM 1728 1517831 - 1517800 - f 95 -16.6 -2.55392 | overlap 1517796 1517810 AACCGAGCTAATGTA TGCCGGATAAGGCG TTTA CGCCGCATCCGGCA ACCTGACATAAATTA SDY_1656 1518861 - 1519217 + | iso-IS1 ORF2 TERM 1729 1519761 - 1519724 - g 71 -3.4 -4.74103 | gap 1, overlap 1519743 TGCGTAATGGAAAAA TACTGGCTAC-GGGAGA AAATG TCTCCCTGGGGACAGTA AATAAAAGCAAAGTA SDY_1657 1519195 - 1519872 + | putative adhesin TERM 1730 1520114 - 1520095 - f 72 -5 -4.58297 | opp_overlap 1520097, overlap 1520097 GATTAAAAATAGAAA GAGAGTAG TCCA CTACTCTT ATATATCCATGTTGG TERM 1731 1520112 - 1520097 - f 71 -7.6 -3.87576 | opp_overlap 1520097, overlap 1520095 TTAAAAATAGAAAGA GAGTAG TCCA CTACTC TTATATATCCATGTT SDY_1658 1520206 - 1522485 + | putative oxidoreductase TERM 1732 1522498 - 1522530 + F 85 -13.7 -2.95987 | overlap 1522495 TAATGCCTCTTCTCA TTTCTTCTGCTGT CGCCCGC ACAGCAGAAGAAA TCCTTATTGACTATT SDY_1659 1522734 - 1522931 + | hypothetical protein SDY_1660 1523006 - 1523785 + | transcriptional regulator YdeO TERM 1733 1523839 - 1523817 - f 85 -6.2 -5.18355 | opp_overlap 1523817 1523816, overlap 1523818 CGTAAAAATTAAAAA TGGGGCAG TCATTCC CTGCCCCG CGTTGTTTTTAGGCG TERM 1734 1523838 - 1523818 - f 79 -9.7 -3.69386 | opp_overlap 1523817 1523816, overlap 1523817 GTAAAAATTAAAAAT GGGGCAG TCATTCC CTGCCCC GCGTTGTTTTTAGGC SDY_1661 1524172 - 1524657 + | hypothetical protein SDY_1662 1525300 - 1524905 - | iso-IS1 ORF2 SDY_1663 1525712 - 1526020 + | hypothetical protein TERM 1735 1526034 - 1526053 + F 100 -10.7 -5.00138 | AACATCCTCTCCTGA CCAGCCC TTCTCT GGGCTGG TTTTTGATTTAAGTG SDY_1664 1526379 - 1527401 + | hypothetical protein insB 1527706 - 1527915 + | IS1 ORF2 SDY_1666 1528320 - 1528066 - | hypothetical protein SDY_1667 1528515 - 1528910 + | iso-IS1 ORF2 TERM 1736 1528988 - 1528974 - f 70 -2.2 -4.91573 | opp_overlap 1528975, overlap 1528975 AAAACAGAGCAAAAA CTTAAA TTT TTTAAA TGTTTCTGGGAAGAA SDY_1668 1529017 - 1529355 + | hypothetical protein SDY_1669 1531258 - 1529522 - | hypothetical protein TERM 1737 1530159 - 1530180 + g 70 -6.6 -4.14472 | opp_overlap 1530175, overlap 1530177 ATTACGCCCTGTTCT GTGGCATT TCTGAT AATGCCGC TTTTAACGGTATTCG TERM 1738 1530503 - 1530522 + g 100 -4.3 -5.60993 | gap 1 ATGGGTGATCAGGCC TGCCTGGA AAAAA TCC-GGCA TTTTTTTATCGACAG TERM 1739 1530570 - 1530589 + g 82 -2.8 -5.24129 | overlap 1530564 1530572 GTGGCTCTTTCCGGC TGCATCCC TGCC GCGATGTA TTTTTTCTCCAGCCC SDY_1670 1532576 - 1531311 - | hypothetical protein SDY_1671 1533409 - 1532696 - | IS600 ORF2 TERM 1740 1533163 - 1533185 + g 88 -12 -3.81951 | opp_overlap 1533161 GTGTGGCAACATACG TCAGGTCCGG CAC CCAGACCTGA TTTGGTGCTGTAGGA SDY_1672 1533852 - 1533550 - | IS600 ORF1 TERM 1741 1534128 - 1534098 - R 100 -17 -5.05116 | opp_overlap 1534098 TCAGAAATAAGAAAA CCCTTAAGTCTGTG CGA CACAGGCTTAAGGG TTTCTACCCCATCCG TERM 1742 1534098 - 1534128 + r 100 -19.2 -3.86897 | opp_overlap 1534098 TCAGAAATAAGAAAA CCCTTAAGTCTGTG CGA CACAGGCTTAAGGG TTTCTACCCCATCCG SDY_1673 1534623 - 1534354 - | hypothetical protein TERM 1743 1534599 - 1534564 - G 74 -9.8 -3.48276 | overlap 1534566 1534567 CTCGCTTTTAGACAA GACCTGCACAGTATAC CACC GTTTACTGTGCAGATA ATGACCAAAAGCAAT TERM 1744 1534597 - 1534566 - G 83 -12.4 -3.31726 | overlap 1534564 1534567 CGCTTTTAGACAAGA CCTGCACAGTATAC CACC GTTTACTGTGCAGA TAATGACCAAAAGCA TERM 1745 1534596 - 1534567 - G 84 -13.7 -2.58822 | overlap 1534566 1534564 GCTTTTAGACAAGAC CTGCACAGTATAC CACC GTTTACTGTGCAG ATAATGACCAAAAGC TERM 1746 1534677 - 1534650 - R 70 -4.8 -4.43859 | overlap 1534652 GACAACGTCACAAAA TGGCGGTCGTCA ATCG TGACGAACAGCA CAAACGCCCTTTCTC SDY_1674 1535052 - 1534642 - | hypothetical protein ydiJ 1538105 - 1535049 - | putative oxidase TERM 1747 1537707 - 1537686 - G 76 -3.7 -5.00616 | opp_overlap 1537700 TTCCGGCGCAAAAAA GTAGCCGAA CGGT TTCAGGTAC TGATTGAGTTGATCT SDY_1676 1538494 - 1539606 + | putative inner membrane protein TERM 1748 1539614 - 1539634 + T 100 -16.9 -3.61517 | opp_overlap 1539608 1539603 ATAAGTAATTTCTCA TCAGGCGGC TCT GCCGCCTGA TTGTTAACCACCGCT TERM 1749 1539870 - 1539889 + T 100 -9.3 -5.82388 | CTGTGTGTAGTCTTT GCCCATC TCCCAC GATGGGC TTTTTTTTAACATTT SDY_1677 1540751 - 1540221 - | IS600 ORF2 SDY_1678 1541194 - 1540892 - | IS600 ORF1 TERM 1750 1541430 - 1541417 - g 72 -6.7 -4.19238 | opp_overlap 1541417 GCGTCAATGGGAAAA TGGCA AGTG TGCCA TTCCTGATTGTGTAG SDY_1679 1541277 - 1541660 + | hypothetical protein SDY_1680 1542182 - 1541787 - | iso-IS1 ORF2 SDY_1681 1542377 - 1542577 + | hypothetical protein SDY_1682 1542606 - 1542986 + | hypothetical protein SDY_1683 1543365 - 1543721 + | iso-IS1 ORF2 SDY_1684 1543799 - 1544161 + | hypothetical protein yeaK 1544204 - 1544707 + | hypothetical protein SDY_1686 1544860 - 1544708 - | hypothetical protein yeaL 1544982 - 1545428 + | hypothetical protein yeaM 1546206 - 1545385 - | putative ARAC-type regulatory protein TERM 1751 1545447 - 1545468 + g 93 -11.5 -4.1711 | opp_overlap 1545445, overlap 1545464 1545465 ATCCCGCAATATATC GGCCTGGCG TTTG CCCCAGGCC TTTCTTAAACATAGT TERM 1752 1546278 - 1546264 - H 76 -4.2 -4.99312 | AACATAACAATAAAA GCGGTA AGG TACAGC CTCGTTTGTAACTAT yeaN 1546303 - 1547484 + | putative amino acid/amine transport protein TERM 1753 1547859 - 1547835 - g 86 -6.5 -5.1675 | gap 1 CTACTCAGCAAAAAA CACCA-CGCA GAACCA TGCGCTGGTG CTGGCCGACTGGCTA yeaO 1547518 - 1547886 + | hypothetical protein yoaF 1548162 - 1547908 - | hypothetical protein yeaP 1548216 - 1549370 + | hypothetical protein SDY_1693 1549924 - 1549529 - | iso-IS1 ORF2 SDY_1694 1550119 - 1550352 + | hypothetical protein TERM 1754 1550399 - 1550369 - T 78 -4.8 -5.03314 | gap 1, opp_overlap 1550376, overlap 1550371 1550372 1550376 GTCACCTCTAAAAAA TAGCAAAGGCTGC CTGTGT GCAGCCTTTG-TG CAATTTAAGCGTTAA TERM 1755 1550398 - 1550371 - T 83 -9.9 -4.14633 | opp_overlap 1550376, overlap 1550369 1550372 1550376 CACCTCTAAAAAATA GCAAAGGCTGC CTGTGT GCAGCCTTTGT GCAATTTAAGCGTTA TERM 1756 1550397 - 1550372 - T 82 -13.4 -3.08056 | opp_overlap 1550376, overlap 1550371 1550369 1550376 ACCTCTAAAAAATAG CAAAGGCTGC CTGTGT GCAGCCTTTG TGCAATTTAAGCGTT TERM 1757 1550376 - 1550393 + T 74 -8.4 -3.95219 | opp_overlap 1550372 1550371 1550369 1550376 CTAAAAAATAGCAAA GGCTGC CTGTGT GCAGCC TTTGTGCAATTTAAG TERM 1758 1550393 - 1550376 - T 76 -8.4 -4.18668 | opp_overlap 1550376, overlap 1550372 1550371 1550369 CTAAAAAATAGCAAA GGCTGC CTGTGT GCAGCC TTTGTGCAATTTAAG yeaQ 1550659 - 1550411 - | hypothetical protein yoaG 1550989 - 1550807 - | hypothetical protein yeaR 1551352 - 1550993 - | hypothetical protein yeaS 1552163 - 1551525 - | leucine export protein LeuE TERM 1759 1552123 - 1552112 - G 79 -2.2 -5.29716 | CCAACACAATAAAAA TGGC CCCA ACCA GATAGGTCCAGTAAT SDY_1699 1552658 - 1552263 - | iso-IS1 ORF2 yeaT 1553971 - 1553027 - | putative transcriptional regulator LYSR-type TERM 1760 1553948 - 1553958 + g 71 -3.2 -4.78848 | CAGCGGTAAATTATT CATG ATT CGTG TTTTATGTTTCACCA yeaU 1554053 - 1555138 + | putative tartrate dehydrogenase TERM 1761 1555160 - 1555176 + TF 100 -13.7 -5.87996 | ACCAGTTTATTTGAA CCGCGTC ACT GACGCGG TTTTTTTATTCGTTC TERM 1762 1555504 - 1555488 - gT 79 -10.1 -3.78934 | CTTTTCCCAGAACAA TCGGCCG ACG CGGCCAA CGCAATATACACTTT SDY_1703 1555748 - 1555533 - | hypothetical protein SDY_1702 1555389 - 1555604 + | hypothetical protein SDY_1704 1555926 - 1556321 + | iso-IS1 ORF2 yeaW 1557775 - 1558899 + | hypothetical protein TERM 1763 1558900 - 1558935 + F 80 -6.7 -4.7373 | opp_overlap 1558900 1558905, overlap 1558903 1558904 GTATTTAAGGACTAA TGACATCGGCGGCGG TATTTT CCGCCGCCGGGCTGA TTTTTGATGGAGTAC TERM 1764 1558904 - 1558931 + F 76 -11.9 -2.56601 | opp_overlap 1558900 1558905, overlap 1558903 1558900 TTAAGGACTAATGAC ATCGGCGGCGG TATTTT CCGCCGCCGGG CTGATTTTTGATGGA TERM 1765 1558930 - 1558905 - f 82 -13.2 -2.95409 | opp_overlap 1558904 1558903 1558900, overlap 1558900 TAAGGACTAATGACA TCGGCGGCGG TATTTT CCGCCGCCGG GCTGATTTTTGATGG TERM 1766 1559199 - 1559209 + G 88 -8.2 -4.65895 | opp_overlap 1559191 1559192 AAGAAAACTCGCGCG GCGG TTC CCGC TTTTTGCATCAGCAG yeaX 1558955 - 1559920 + | putative diogenase beta subunit TERM 1767 1559921 - 1559971 + T 100 -18.3 -4.26344 | GTGTTGGATTTGTAG TTTGCCGAAGCCGGATGTGGCGC TGAGC GCGCCCAGTCCGGCTTCGGAAGA TTTTACTGCAGATAT rnd 1561101 - 1559974 - | ribonuclease D TERM 1768 1561150 - 1561134 - R 100 -10.8 -5.75342 | opp_overlap 1561147, overlap 1561145 GGGCGTCAAAAAAAA CGCCGG ATTAA CCGGCG TCTGACGACTGACTT fadD 1562856 - 1561171 - | long-chain-fatty-acid--CoA ligase TERM 1769 1561901 - 1561889 - G 72 -7.7 -3.91144 | opp_overlap 1561888 1561885, overlap 1561875 1561874 TGCAGACTGGAGAAA TCCAG CTG CTGGA ACTCTTTATTGTTCA TERM 1770 1563039 - 1563015 - R 86 -14.4 -2.66106 | opp_overlap 1563015 1563034, overlap 1563019 TACCGTAAGAATGCA GAAACAGCGG ACCAG CCGCTGTTTC TTTTTCTTTAAAAAC TERM 1771 1563015 - 1563039 + r 100 -14.4 -5.27335 | opp_overlap 1563015 1563019, overlap 1563034 TACCGTAAGAATGCA GAAACAGCGG ACCAG CCGCTGTTTC TTTTTCTTTAAAAAC TERM 1772 1563035 - 1563019 - R 79 -9.4 -4.02253 | opp_overlap 1563015 1563034, overlap 1563015 GTAAGAATGCAGAAA CAGCGG ACCAG CCGCTG TTTCTTTTTCTTTAA SDY_1710 1563642 - 1563061 - | putative outer membrane protein yeaZ 1564377 - 1563682 - | hypothetical protein SDY_1712 1566345 - 1564435 - | putative enzyme TERM 1773 1564957 - 1564946 - G 72 -4.4 -4.64846 | opp_overlap 1564946 GTACAAAGCATAAAA CAAC GACC GTTG TTAGCTTCGATGATC TERM 1774 1565524 - 1565504 - G 83 -6.1 -4.9725 | AGTTGCAGACAAAAA TCCTGCGCA CTC TGGGCAAGA CGATCAGCGCACTTT SDY_1713 1566429 - 1566821 + | hypothetical protein TERM 1775 1566893 - 1566867 - f 71 -9.5 -3.25668 | overlap 1566865 AATTTATCGATAATA CTGGTCGCTTT TACAT AAATCGACCAG AGAATGAGATATTAC insA 1567023 - 1567298 + | IS1 ORF1 insB 1567343 - 1567720 + | IS1 ORF2 SDY_1716 1567960 - 1568241 + | hypothetical protein TERM 1776 1568349 - 1568379 + T 100 -11.3 -4.84359 | opp_overlap 1568346 1568343 AGCATAAATGGATCA GGACGCTTTTAAT CACAT ATAAAAAGCGTCC TTTTTCTCACAATCA SDY_1717 1568618 - 1568439 - | hypothetical protein TERM 1777 1568798 - 1568826 + G 72 -8.1 -3.98159 | overlap 1568799 CGATGCTTTTACACT CCGGCTATGCCGA TCA TCCGTATAGCCGC TTTGATATTGTGGTC TERM 1778 1568799 - 1568825 + G 75 -11.6 -2.98173 | overlap 1568798 GATGCTTTTACACTC CGGCTATGCCGA TCA TCCGTATAGCCG CTTTGATATTGTGGT TERM 1779 1569406 - 1569419 + G 83 -5.2 -5.1615 | AATCAGGCCAACCGC GCGC CATTTA GCGC TTTTTTACGTCTTGA TERM 1780 1569457 - 1569468 + G 70 -3.6 -4.63952 | GCAATTTTGAGCCTT TCGC CAGA GCGG TTTATTCTTTGTGAT pabB 1568692 - 1570053 + | p-aminobenzoate synthetase, component I yeaB 1570057 - 1570635 + | hypothetical protein sdaA 1570819 - 1572183 + | L-serine deaminase TERM 1781 1572193 - 1572219 + F 95 -13 -3.88583 | overlap 1572194 GACTAATACTTCTTA CTCGCCCATCTG CAA CGGATGGGCGAA TTTATCCCCGCTTTC TERM 1782 1572194 - 1572218 + F 100 -16.5 -2.92668 | overlap 1572193 ACTAATACTTCTTAC TCGCCCATCTG CAA CGGATGGGCGA ATTTATCCCCGCTTT insA 1572553 - 1572828 + | IS1 ORF1 SDY_1723 1573496 - 1573185 - | hypothetical protein insB 1572873 - 1573250 + | IS1 ORF2 yncB 1574824 - 1573694 - | putative oxidoreductase SDY_1725 1574909 - 1575427 + | putative resistance protein TERM 1783 1575840 - 1575867 + G 78 -8.4 -4.25283 | gap 1, overlap 1575842 AATTTTACTTGTGGT TG-GCGCCTGGCT GGT GGCCAGACGCTCA TTTTAATCACAGGAT TERM 1784 1575842 - 1575864 + G 74 -11.2 -3.13504 | overlap 1575840 TTTTACTTGTGGTTG GCGCCTGGCT GGT GGCCAGACGC TCATTTTAATCACAG SDY_1726 1575424 - 1575873 + | hypothetical protein SDY_1727 1576448 - 1576053 - | iso-IS1 ORF2 TERM 1785 1576657 - 1576639 - H 72 -5.2 -4.63184 | opp_overlap 1576649, overlap 1576640 AAGTGAGCTGAAAAA CGCGGTGA CAG TCACGGCA GCGAAATCTGTCATG SDY_1728 1576643 - 1576894 + | hypothetical protein SDY_1729 1577215 - 1576967 - | hypothetical protein SDY_1730 1578951 - 1577527 - | gamma-aminobutyraldehyde dehydrogenase TERM 1786 1577661 - 1577648 - G 70 -6.7 -4.02108 | CTTACCAGAATGAAA TGGGT ATTG ACCCA GGTACAACCATATTG TERM 1787 1578315 - 1578335 + g 72 -6.7 -4.2349 | overlap 1578333 GCACTTTAGGATGTC CGGTCAGCG GAT CGCCCACCG TTTTGCCTCTGCCAA TERM 1788 1579356 - 1579343 - R 74 -3.8 -5.05079 | ACAACTACACAAAAA GTCG CATGAC CGAC CACGATGGTGAAAAA SDY_1733 1581623 - 1580610 - | putative ATP-binding component of a transport system SDY_1734 1582786 - 1581641 - | putative transport protein TERM 1789 1581761 - 1581772 + g 72 -4.4 -4.63527 | opp_overlap 1581749 1581750 1581758, overlap 1581758 ATAGTTAAAACCGTT GGTT TCAC AACC TTTTTCGCCTAATAA TERM 1790 1582414 - 1582428 + g 72 -7 -4.19238 | opp_overlap 1582414 AGTCGCCTTTAACCA CGCGCG GAT CGAGCG TTTTCCAGTTGGGAA SDY_1735 1584437 - 1583031 - | putative transcriptional regulator TERM 1791 1583289 - 1583312 + g 72 -8.2 -3.75153 | gap 1, opp_overlap 1583288 1583287 1583291, overlap 1583293 1583294 CGCAGGCAGATAACG CAGCAGTGCCT GCC AGGCAC-GTTG TTTACGTTCCGCAAG TERM 1792 1583540 - 1583528 - G 70 -5.5 -4.31688 | opp_overlap 1583533 1583534, overlap 1583529 AAGAGCAATGCAAAA CGCCA TCG TGGCA ATCCCACGCTTTCGC TERM 1793 1584482 - 1584499 + r 70 -4.9 -4.44548 | opp_overlap 1584482 CGGCAGTCTATATCA GTTGTTA AAAA TGACAAC TTTTCGTTAACTGTA SDY_1736 1584953 - 1584516 - | hypothetical protein SDY_1737 1584993 - 1585190 + | hypothetical protein TERM 1794 1585204 - 1585187 - T 74 -7.1 -4.30177 | opp_overlap 1585186 1585187 GAGTATATCAACAAA GTAAACA TTAG TGTTTAC CTTCGTGTGTAATTT SDY_1738 1585641 - 1585246 - | iso-IS1 ORF2 SDY_1739 1585836 - 1586093 + | hypothetical protein ydcP 1587835 - 1586198 - | putative collagenase TERM 1795 1587837 - 1587817 - G 77 -6.1 -4.63527 | overlap 1587819 CCAGTAGCTGAAAAA TGGCGGCTA TTT TAGCCACAA GCGCGACGTTGCGAA ydcN 1588402 - 1587866 - | hypothetical protein TERM 1796 1588769 - 1588779 + H 73 -2.4 -5.18726 | ACTAACACTTAACGA AGCC ATC GGCG TTTTTATTGTCACCA TERM 1797 1589353 - 1589366 + H 71 -3.8 -4.82128 | opp_overlap 1589336, overlap 1589344 ACGTTGGCTGGCAGC TGCC GTTGCA GGCA TTTTCTATTTGCTCG TERM 1798 1589673 - 1589654 - H 100 -13.6 -5.21236 | AACCGATAATAAAAA GCGCCATC TAAC GATGGCGC GTCTGGAACTACTTT SDY_1743 1589667 - 1589888 + | hypothetical protein insB 1590279 - 1589902 - | IS1 ORF2 insA 1590599 - 1590324 - | IS1 ORF1 SDY_1746 1590966 - 1590628 - | hypothetical protein TERM 1799 1590824 - 1590813 - G 70 -5.8 -4.28774 | CTAGCCAACGTAAAA CAGG TTTA CCTG TAGCCGAGGTTGTTT TERM 1800 1590885 - 1590869 - G 79 -3.7 -5.03145 | TAATTGTTTAAAAAA CCAGA ATATTTA TCTGG CTGGGTGATTTTAGA TERM 1801 1591233 - 1591253 + r 70 -5.3 -4.44667 | CAGTAAACCATCTCA GCGTGGGGA ATT TTCACGCGC TTTGTTCTTACCGGG tehB 1591862 - 1591269 - | tellurite resistance protein TehB TERM 1802 1591323 - 1591352 + g 73 -9.2 -3.58428 | AATACGATTACCGTT GGCGTCGGTGCG GTGCAG CTCGCCGACGTC TTCATTGTATTTCAC tehA 1592839 - 1591859 - | potassium-tellurite ethidium and proflavin transporter TERM 1803 1592357 - 1592339 - G 72 -5.3 -4.56597 | gap 1, overlap 1592341 GCCTGCTCCTAAAAA CACCAGAC CGGC GTC-GGTG TAGCCCAACGCACCA SDY_1749 1593031 - 1593465 + | hypothetical protein TERM 1804 1593511 - 1593523 + F 74 -3.3 -5.0925 | opp_overlap 1593511 TATGCTTTTATTGAA CATCG CGC CGAAG TTTTTGATTTTGCCA SDY_1750 1593696 - 1593944 + | hypothetical protein rimL 1594475 - 1593936 - | ribosomal-protein-L7/L12-serine acetyltransferase TERM 1805 1594527 - 1594511 - R 100 -10.8 -5.02074 | GCAGTTGTTAAAAAA GCCGCC TGGCT GGCGGC TTAGGAAAGTTTACA TERM 1806 1594557 - 1594569 + r 73 -7.7 -4.13282 | ACCTCTTTGACGCTC TCCTG CTG CAGGA TTTTGAGCATCTCAT ydcH 1594705 - 1594538 - | hypothetical protein insA 1594803 - 1595078 + | IS1 ORF1 insB 1595123 - 1595500 + | IS1 ORF2 TERM 1807 1595666 - 1595643 - gT 90 -14.6 -2.90075 | TCGTGTTTAACCAGA CGGCACCTCC CGAA GAAGGTGCCG AAGAAAAAACAATTA mdoD 1597334 - 1595679 - | glucan biosynthesis protein D SDY_1755 1595555 - 1595758 + | hypothetical protein TERM 1808 1596868 - 1596856 - GT 74 -6.9 -4.21827 | opp_overlap 1596857 1596858, overlap 1596857 TTAAACACGCGAAAA CCGGC AAA GCCGA GATCGCTTTGCCCTT SDY_1757 1598902 - 1597559 - | hypothetical protein TERM 1809 1598544 - 1598527 - G 75 -5.5 -4.67353 | GTAGGGAGGTAAAAA CGCGGAA GGGA TTACGCG CCAGAGAAGCATCAT SDY_1758 1598978 - 1600033 + | putative transcriptional regulator LYSR-type SDY_1759 1600368 - 1600763 + | iso-IS1 ORF2 trg 1602269 - 1600836 - | methyl-accepting chemotaxis protein III TERM 1810 1601529 - 1601558 + g 86 -10.8 -3.97307 | gap 1, overlap 1601531 AGTGAGTTGCTCCAT GCTGGCGGCAGTT TGTTC AATTGCCGCC-GC TTGTTCTTCGGTGCG TERM 1811 1601531 - 1601557 + g 71 -10.9 -2.97902 | overlap 1601529 TGAGTTGCTCCATGC TGGCGGCAGTT TGTTC AATTGCCGCCG CTTGTTCTTCGGTGC TERM 1812 1601746 - 1601758 + g 95 -9.1 -5.10497 | TCATTCATCGTCAGA TCGCC ACT GGCGA TTTTTTCAATCCGTT TERM 1813 1601894 - 1601871 - G 70 -6.6 -4.05446 | overlap 1601874 CGCGCCAATCATAAA CATCCCACCC AGGC GGGTGCGCTG ATGGGCCAGTTCCGC SDY_1761 1602715 - 1602320 - | iso-IS1 ORF2 TERM 1814 1603589 - 1603550 - H 72 -9.2 -3.6217 | overlap 1603548 1603554 CGGGAATCAGAAAGA CGAAGGCCCCGACCGATA TTTC TATCAACCGAGGCCAACG AATGAACCAAGCAAT TERM 1815 1603585 - 1603554 - H 86 -11.6 -3.52009 | overlap 1603550 1603548 AATCAGAAAGACGAA GGCCCCGACCGATA TTTC TATCAACCGAGGCC AACGAATGAACCAAG SDY_1762 1603591 - 1603758 + | hypothetical protein ydcA 1604043 - 1603870 - | hypothetical protein TERM 1816 1604014 - 1603999 - G 70 -5.4 -4.38712 | GGCATCGGCATAAAA GGAAAC AAGC GTTCCC ATAAACAAAATAAGT TERM 1817 1604238 - 1604270 + r 78 -4.9 -4.92385 | overlap 1604237 1604240 TAGACCCGTATTCTT CGCCTGTACCA CGGGTCGGTTT TAGTACAGGCG TTTTCTTTAAATATC cybB 1604818 - 1604288 - | cytochrome b561 TERM 1818 1606016 - 1606041 + r 84 -10.4 -3.85389 | overlap 1606018 AAACTCTGACGCGCA CAGGCGGAGG AAAAAA CCTCCGCCTC TTTCACTTATTAAGA TERM 1819 1606018 - 1606039 + r 90 -13 -3.50953 | overlap 1606016 ACTCTGACGCGCACA GGCGGAGG AAAAAA CCTCCGCC TCTTTCACTTATTAA SDY_1767 1607821 - 1607108 - | IS600 ORF2 SDY_1768 1608264 - 1607962 - | IS600 ORF1 TERM 1820 1608439 - 1608449 + r 74 -6.8 -4.30844 | TCTCGCCATCGCGAA CCAG ACA CTGG TTTTAGTCATACACT SDY_1769 1609227 - 1609012 - | iso-IS1 ORF2 SDY_1770 1610159 - 1609746 - | hypothetical protein TERM 1821 1610096 - 1610107 + g 88 -2.2 -5.5112 | AGATTTGCCGACGCA TTCG CCAG CGGA TTTTTTCTTCATAAA TERM 1822 1610135 - 1610125 - G 78 -5.4 -4.82901 | TTTTCTTCATAAAAA GACA AGT TGTC GAATTTGACATTACG insA 1610390 - 1610665 + | IS1 ORF1 SDY_1773 1611291 - 1611022 - | hypothetical protein insB 1610710 - 1611087 + | IS1 ORF2 hrpA 1615682 - 1611837 - | ATP-dependent RNA helicase HrpA TERM 1823 1614086 - 1614107 + g 71 -2.9 -4.7373 | overlap 1614091 CGAGGAAGTCAGACT CTTTGTCGT GGAA GCGACGATG TTTTTCGTCCGATGC TERM 1824 1615744 - 1615770 + H 75 -3.1 -5.10933 | gap 1, overlap 1615750 TGTTCTGTCATAACG TTAGT-GGGCAG TAGT CTGCCTGATTAA TTTTCTTTTAAATGA acpD 1615940 - 1616545 + | azoreductase ynbD 1617624 - 1616599 - | YnbD TERM 1825 1617392 - 1617368 - G 71 -2.7 -4.76075 | overlap 1617369 1617372 ATGACATCAATAAAA TGATGCTGCCA GGT TGTCAGCGTCG AAATGGCGATGAGTA SDY_1777 1617860 - 1617624 - | hypothetical protein SDY_1778 1618055 - 1618450 + | iso-IS1 ORF2 SDY_1779 1620436 - 1618679 - | hypothetical protein TERM 1826 1620496 - 1620484 - R 100 -3.3 -5.92399 | GAATAAAATAAAAAA TACCG GAG CGGTG AAAATTAATGAGTCA SDY_1781 1621746 - 1621399 - | iso-IS1 ORF2 TERM 1827 1622163 - 1622150 - g 81 -6.7 -4.62069 | opp_overlap 1622156, overlap 1622152 CTTTCAGCGGAAAAA TCGCT CTCG AGCGA GGGCTGGATGTTCGT SDY_1782 1621941 - 1622189 + | hypothetical protein TERM 1828 1622509 - 1622497 - g 70 -6.2 -4.2558 | overlap 1622506 CACCTGCGATCAAAA CGGG ACATA CCCG CGTGAATTTATGCGG SDY_1783 1622393 - 1623544 + | putative acyl-CoA dehydrogenase TERM 1829 1623549 - 1623584 + T 73 -11.2 -2.71712 | gap 1, opp_overlap 1623546, overlap 1623546 1623548 AGAACAAATAATCTG CAGGCGGCGCAGCTT CTTAACA AAG-TGCGCCGCCAG ATTTACCCGGCAAGA SDY_1784 1624720 - 1623587 - | IS600 ORF2 SDY_1785 1625163 - 1624861 - | IS600 ORF1 SDY_1786 1625767 - 1625225 - | putative ARAC-type regulatory protein TERM 1830 1625832 - 1625800 - R 80 -6.3 -4.90869 | opp_overlap 1625807 1625831, overlap 1625808 ATGAGCAAGCAAAAA CAATATATGCCGGAT AAA ATACGGCGTGTATTG CGGTTATACAACCGC SDY_1788 1627345 - 1626632 - | IS600 ORF2 SDY_1789 1627788 - 1627486 - | IS600 ORF1 ydiS 1629127 - 1630416 + | hypothetical protein ydiT 1630413 - 1630706 + | hypothetical protein TERM 1831 1630717 - 1630742 + T 86 -11.2 -3.81755 | gap 1, opp_overlap 1630714 1630712, overlap 1630719 GCTAATCATACATCC CA-CAGGCCCG CATCT CGGGCCTGATG TTCTGTTTCGAGAGT TERM 1832 1630719 - 1630739 + T 83 -14 -2.69057 | opp_overlap 1630714 1630712, overlap 1630717 TAATCATACATCCCA CAGGCCCG CATCT CGGGCCTG ATGTTCTGTTTCGAG TERM 1833 1631608 - 1631620 + T 87 -10.5 -4.16904 | TTGCACCTGTATGCT CGGCG CAA CGCCG TTTGTCTATGATCTT TERM 1834 1631729 - 1631745 + T 81 -12.3 -3.29459 | overlap 1631724 AAAGTGGCGCGTGAA TGCCAGC AGC GCTGGCA TTAAATTATTAAGTG TERM 1835 1632430 - 1632464 + T 82 -5.5 -5.10665 | opp_overlap 1632435, overlap 1632434 1632435 CATCTTCGGGGATCA CATAACCCCGGCGAC TGAAC GCCGCCGGGGATTTA TTTTATTTCTTCAGT TERM 1836 1632434 - 1632460 + T 100 -10.7 -5.02645 | opp_overlap 1632435, overlap 1632430 1632435 TTCGGGGATCACATA ACCCCGGCGAC TGAAC GCCGCCGGGGA TTTATTTTATTTCTT TERM 1837 1632459 - 1632435 - T 100 -16.4 -3.54475 | opp_overlap 1632434 1632430 1632435 TCGGGGATCACATAA CCCCGGCGAC TGAAC GCCGCCGGGG ATTTATTTTATTTCT TERM 1838 1632435 - 1632459 + T 93 -14.2 -3.57927 | opp_overlap 1632435, overlap 1632434 1632430 TCGGGGATCACATAA CCCCGGCGAC TGAAC GCCGCCGGGG ATTTATTTTATTTCT ppsA 1634845 - 1632467 - | phosphoenolpyruvate synthase TERM 1839 1633157 - 1633139 - G 78 -8 -4.36914 | opp_overlap 1633138, overlap 1633123 1633120 GCGCTTTGGATAAAA CGCGGCAC CCA GCGTCGCG ATCCCTTCAGTCAGA SDY_1795 1635073 - 1635438 + | insertion sequence 2 OrfA protein SDY_1796 1635593 - 1636303 + | IS2 ORF2 ydiA 1636515 - 1637348 + | hypothetical protein TERM 1840 1637336 - 1637365 + F 76 -4.3 -4.98468 | opp_overlap 1637345, overlap 1637337 CATGGGCCTTAGTCG CCGAATGTACTAG AGAA CTAGTGCATTAGC TTATTTTTTTGTTAT TERM 1841 1638159 - 1638146 - g 86 -6.7 -4.96848 | opp_overlap 1638146, overlap 1638148 CTCGCCAGACAAAAA TGGTC AGAT GACCA TCTATCAGACCAGCG aroH 1637505 - 1638551 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1842 1638557 - 1638580 + F 100 -15.4 -3.86822 | opp_overlap 1638575 CCGCTTCTGAATGCG TGCCCATTCC TGAC GGAATGGGCA TTTCTGCGCAACTTG ydiE 1638683 - 1638874 + | hypothetical protein SDY_1800 1639729 - 1638878 - | hypothetical protein SDY_1801 1640312 - 1639722 - | hypothetical protein SDY_1802 1641088 - 1640375 - | hypothetical protein TERM 1843 1641295 - 1641323 + r 100 -17.5 -4.12188 | opp_overlap 1641296, overlap 1641296 TGTATTCTGGAGTAA ATGGACGGCGATG TAT CATCGCCGTCCAA TTTTCGACATACTAG TERM 1844 1641322 - 1641296 - R 100 -21 -3.73224 | opp_overlap 1641295 1641296 GTATTCTGGAGTAAA TGGACGGCGATG TAT CATCGCCGTCCA ATTTTCGACATACTA TERM 1845 1641296 - 1641322 + r 100 -21 -3.06991 | opp_overlap 1641296, overlap 1641295 GTATTCTGGAGTAAA TGGACGGCGATG TAT CATCGCCGTCCA ATTTTCGACATACTA nlpC 1641799 - 1641335 - | lipoprotein btuD 1642626 - 1641877 - | vitamin B12-transporter ATPase btuE 1643177 - 1642626 - | putative glutathione peroxidase btuC 1644220 - 1643240 - | vtamin B12-transporter permease TERM 1846 1643384 - 1643363 - G 70 -10.1 -3.21218 | overlap 1643350 ATCGGCCAGCAGCAA TGCGCTCGC CCCT GCCAGCGCA CAGCCGGGAAGTAAT TERM 1847 1644103 - 1644092 - G 74 -5.8 -4.4891 | overlap 1644096 GCCACGAGGAGAAAA CCAG TCAC CTGG CGAGATCCATTGTTC TERM 1848 1644303 - 1644289 - R 100 -12.8 -5.80951 | opp_overlap 1644289 AGTGAAAAGAAAAAA GGCCGC AGA GCGGCC TTTTTAGTTAGATCA TERM 1849 1644289 - 1644303 + r 100 -12.8 -4.88407 | opp_overlap 1644289 AGTGAAAAGAAAAAA GGCCGC AGA GCGGCC TTTTTAGTTAGATCA ihfA 1644620 - 1644321 - | integration host factor subunit alpha pheT 1647012 - 1644625 - | phenylalanyl-tRNA synthetase subunit beta pheS 1648010 - 1647027 - | phenylalanyl-tRNA synthetase subunit alpha TERM 1850 1647893 - 1647905 + g 71 -2.6 -5.0133 | GGGTCGTCATCTGAA GGGT TAAGT GCCC TTTTTTACCCAAATA TERM 1851 1648181 - 1648195 + r 82 -2.7 -5.61881 | GGCTGCGACAATTAC GCCTG ATAGA CTGGC TTTTTATTTTTCAAA TERM 1852 1648228 - 1648243 + r 79 -10.4 -3.55815 | opp_overlap 1648228 GCGCATACAAAAAAA GCCTCC ACTG GGAGGC TTTCAGGCGCTGTTT TERM 1853 1648243 - 1648228 - R 100 -10.4 -5.71712 | opp_overlap 1648228 GCGCATACAAAAAAA GCCTCC ACTG GGAGGC TTTCAGGCGCTGTTT SDY_1810 1648337 - 1648293 - | phenylalanyl-tRNA synthetase operon leader peptide TERM 1854 1648430 - 1648448 + r 79 -10.3 -3.62418 | opp_overlap 1648430 GCGTTGAAACGAAAA GAGGGAG ACTAG CTCCCTC TTTCAACTGGCTTAT TERM 1855 1648448 - 1648430 - R 93 -10.3 -4.54727 | opp_overlap 1648430 GCGTTGAAACGAAAA GAGGGAG ACTAG CTCCCTC TTTCAACTGGCTTAT rplT 1648816 - 1648460 - | 50S ribosomal protein L20 rpmI 1649066 - 1648869 - | 50S ribosomal protein L35 infC 1649594 - 1649160 - | translation initiation factor IF-3 TERM 1856 1649302 - 1649326 + g 72 -6.4 -4.39571 | gap 1 TGCTGGTGCGCCATC TCACGACCGCG GAAA CGCAG-CGTGA TTTTGGCTTTATCAC thrS 1651634 - 1649706 - | threonyl-tRNA synthetase TERM 1857 1650705 - 1650715 + g 71 -2.4 -5.00616 | ATCTTTGTAGTTGTC CCAG TGA CCGG TTTTTTCCCACAGGA TERM 1858 1650906 - 1650920 + g 73 -9.2 -3.61715 | ACCGATTTTACGGTG GTCGCG TTT CGCGGC TTCTTCCAGGCGCTG TERM 1859 1650943 - 1650953 + g 90 -4.6 -5.36441 | AGGCGCTGCAGGTAA GCGT TAA GCGC TTTTTTGTCTGCCCA SDY_1815 1652378 - 1652773 + | iso-IS1 ORF2 pfkB 1652940 - 1653869 + | 6-phosphofructokinase 2 TERM 1860 1653899 - 1653876 - f 100 -9.6 -5.06414 | overlap 1653878 TCCCGCTAACAAAAA CATTCCCCCA GTAT TGGGGGAATC ATCACCAACCTGTCG TERM 1861 1653897 - 1653878 - f 95 -12.2 -4.16307 | overlap 1653876 CCGCTAACAAAAACA TTCCCCCA GTAT TGGGGGAA TCATCACCAACCTGT SDY_1817 1653970 - 1654260 + | hypothetical protein TERM 1862 1654662 - 1654674 + G 90 -9.1 -4.48713 | ACCTCGTCCGCTGGA TGCGC ATA GCGCA TTTATTCTTGGTCAG SDY_1818 1654366 - 1655226 + | hypothetical protein TERM 1863 1655244 - 1655260 + T 93 -10.8 -4.43477 | opp_overlap 1655243 1655244 TGGGTTGAGGATAAT GGCCGC TCCGT GCGGCC TTTTGATTAAATAAA TERM 1864 1655260 - 1655244 - T 71 -10.8 -2.64099 | opp_overlap 1655244, overlap 1655243 TGGGTTGAGGATAAT GGCCGC TCCGT GCGGCC TTTTGATTAAATAAA SDY_1819 1655803 - 1655267 - | hypothetical protein TERM 1865 1655541 - 1655521 - G 81 -6.1 -4.84359 | overlap 1655524 CCAGTCCGACAAAAA TCAGGATGA AAA TCACCCAGA ACATAACGTTCACGC TERM 1866 1655618 - 1655607 - G 90 -7.2 -5.15381 | AATAGATTCAAAAAA GGCG TATT CGCC TGCATCATATCGATC yniC 1655950 - 1656618 + | 2-deoxyglucose-6-phosphatase TERM 1867 1656650 - 1656622 - f 73 -11 -2.70932 | gap 1, opp_overlap 1656622 1656626 CTTCTCGGTTAATGA CCAGGGGGCAGTG ATCA CGCTGCCCC-TGG TTCTTTATCTGAATT TERM 1868 1656622 - 1656650 + F 95 -13.2 -4.16301 | gap 1, opp_overlap 1656622, overlap 1656626 CTTCTCGGTTAATGA CCAGGGGGCAGTG ATCA CGCTGCCCC-TGG TTCTTTATCTGAATT TERM 1869 1656626 - 1656647 + F 85 -13.7 -3.09322 | opp_overlap 1656622, overlap 1656622 TCGGTTAATGACCAG GGGGCAGTG ATCA CGCTGCCCC TGGTTCTTTATCTGA TERM 1870 1656790 - 1656805 + G 73 -4 -4.74767 | gap 1, overlap 1656791 TTTTATCATGACGGC G-GAAGG TCA CCTTCTC TTTTCTATTGCTTGT TERM 1871 1656791 - 1656803 + G 72 -7.7 -3.97283 | overlap 1656790 TTTATCATGACGGCG GAAGG TCA CCTTC TCTTTTCTATTGCTT SDY_1821 1656782 - 1657372 + | hypothetical protein insB 1657812 - 1657435 - | IS1 ORF2 insA 1658132 - 1657857 - | IS1 ORF1 rstA 1658219 - 1658935 + | DNA-binding transcriptional regulator RstA TERM 1872 1659891 - 1659855 - g 73 -3.6 -4.87665 | CGGTACGGATAAAAA CGCTCATGCAAGGCCA TTATG CGGCGTTGGATATGCG CTTAATGGAGCGCGT rstB 1658939 - 1660240 + | sensor protein RstB tus 1660316 - 1661245 + | DNA replication terminus site-binding protein fumC 1662645 - 1661242 - | fumarate hydratase TERM 1873 1661762 - 1661731 - G 76 -12.2 -2.50443 | gap 1, opp_overlap 1661730, overlap 1661730 TGAGATTTCACCAAT TCCGCAGCGCGGGCC AGA GGCCAGC-CAGCGGA CATCATTGGCGATTT TERM 1874 1662765 - 1662780 + r 76 -11.8 -2.68607 | opp_overlap 1662765, overlap 1662764 1662762 1662760 GTGCCATGTAAAAAA CCGCCC CGAA GGGCGG CTCTGTTTATTTCAC TERM 1875 1662780 - 1662765 - R 100 -11.8 -5.08824 | opp_overlap 1662765 1662764 1662762 1662760 GTGCCATGTAAAAAA CCGCCC CGAA GGGCGG CTCTGTTTATTTCAC fumA 1664433 - 1662787 - | fumarase A TERM 1876 1662987 - 1663005 + g 74 -3 -5.0133 | overlap 1662990 GACCACCGATACTGC CAAGGTAG AAG CCACCGTG TTTTTTACAGGCATC TERM 1877 1663407 - 1663422 + g 72 -4.7 -4.66163 | CCGGGATATATTTGC CTGGA TTATGT TCCAG TTTTTCGATCCAGAT TERM 1878 1664367 - 1664385 + g 74 -2.4 -5.08824 | opp_overlap 1664367 GTTCGCTGGTTAACA GGTAATAC TCA GTATCATC TTTTTTGAGTGGAAA TERM 1879 1664842 - 1664881 + G 95 -15.2 -3.06583 | gap 1, opp_overlap 1664834, overlap 1664847 AAATCGACTCTACTC GGAGAGGCCGTT-GCCAAA CGC TTTGGCGAACTGCCTTTCC TGTTCAAAGTATTAT TERM 1880 1664847 - 1664876 + G 81 -10.1 -3.92592 | gap 1, opp_overlap 1664834, overlap 1664842 GACTCTACTCGGAGA GGCCGTT-GCCAAA CGC TTTGGCGAACTGCC TTTCCTGTTCAAAGT manA 1664632 - 1665807 + | mannose-6-phosphate isomerase TERM 1881 1665865 - 1665885 + F 95 -12.6 -4.27483 | opp_overlap 1665860 1665863 1665862 AGGCTTATAACACCT TCAGGCGG CCAGT CCGCCTGA TTTCATTTTATGGAT TERM 1882 1666435 - 1666418 - g 73 -4 -4.86773 | overlap 1666419 1666420 CAAAAGGATGAAAAA GTCGCC TTTAGC GGCGGC GAGTTCCAGTTAAAT TERM 1883 1667084 - 1667066 - g 74 -8.1 -4.04927 | gap 1 GCAACGACTAAAGAA GCGCC-GC AAAC GCTGGCGC AGGAAGTAGATCGTT ydgA 1665908 - 1667416 + | hypothetical protein TERM 1884 1667427 - 1667456 + F 87 -10 -4.3255 | opp_overlap 1667430, overlap 1667430 AGTAATTCACAGCCA AAACGCCGGAGG TTTTTC TCTCCGGCGTTA TTTCTTACTTCAGCA TERM 1885 1667430 - 1667453 + F 95 -11.7 -4.27694 | opp_overlap 1667430, overlap 1667427 AATTCACAGCCAAAA CGCCGGAGG TTTTTC TCTCCGGCG TTATTTCTTACTTCA TERM 1886 1667453 - 1667430 - f 91 -11 -4.24606 | opp_overlap 1667427 1667430 AATTCACAGCCAAAA CGCCGGAG GTTTTTCT CTCCGGCG TTATTTCTTACTTCA SDY_1832 1668947 - 1669342 + | iso-IS1 ORF2 SDY_1833 1669855 - 1669544 - | hypothetical protein SDY_1834 1669879 - 1670094 + | iso-IS1 ORF2 uidB 1671405 - 1670104 - | glucuronide transporter TERM 1887 1671026 - 1671060 + g 100 -14.3 -3.69395 | gap 1, opp_overlap 1671017 1671018 AATGAAGCGGCAATC CCACGAGC-CGCGCCC AGAC GGGCGCGGGATTGTGG TTGTTGGGTCATCGC TERM 1888 1671259 - 1671241 - G 74 -3 -4.88228 | overlap 1671242 1671243 ACCGAAGAGTAAAAA CGGGCGAA ATT TTCCCCAG CGGGTATTCACACTG TERM 1889 1672073 - 1672086 + r 71 -3.8 -4.83169 | opp_overlap 1672073, overlap 1672071 CAATACTCCACATCA CCAC GCTTGG GTGG TTTTTGTCACGCGCT TERM 1890 1673663 - 1673637 - R 71 -8 -3.90684 | AATTAAAGTATGAAA CGCGGGCT CAATTGTCACC AGCCCGCG GAAAGAGAGAGAGAA uidR 1674269 - 1673679 - | repressor for uid operon TERM 1891 1674378 - 1674401 + r 70 -9.6 -2.94144 | overlap 1674376 CGTATGCTTTTCATC CAGCTATTGG TTAA CCAATAGCCG TGATTTGGCTGCCAG TERM 1892 1674455 - 1674485 + r 73 -9.8 -3.456 | opp_overlap 1674472 ATTGCACACGCTATC CCGGTAAACAAC ACATACG GCTGTTTACCGG TTCGTTAGTGTATTA hdhA 1675265 - 1674498 - | 7-alpha-hydroxysteroid dehydrogenase TERM 1893 1675316 - 1675345 + r 89 -9.3 -4.59109 | overlap 1675318 CACCGCCTGTGTGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 1894 1675318 - 1675343 + r 100 -16.3 -3.90762 | overlap 1675316 CCGCCTGTGTGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SDY_1839 1676129 - 1675458 - | IS4 orf SDY_1840 1676658 - 1676071 - | IS4 orf TERM 1895 1676648 - 1676673 + gr 73 -9.1 -3.61398 | opp_overlap 1676648 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 1896 1676673 - 1676648 - GR 100 -9.8 -5.61596 | opp_overlap 1676648 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 1897 1676731 - 1676741 + r 85 -5.4 -5.37345 | TCGGCATTAACCGCC TGTG TGC CACA TTTTTTATCATTAAC malI 1677828 - 1676800 - | DNA-binding transcriptional repressor MalI TERM 1898 1678370 - 1678360 - g 72 -6.8 -4.24342 | TGGTTGACCAATAAA GGCA TTC TGCC AACCACAGACGCCGC TERM 1899 1678874 - 1678893 + G 74 -8.6 -3.87373 | gap 1 CCACGCGTTTCCTTT CGCAAGGCA AAA TGCCT-GCG TTTCTCGGCGGTCTG malX 1678003 - 1679403 + | PTS system, maltose and glucose-specific II ABC SDY_1843 1679773 - 1679378 - | iso-IS1 ORF2 SDY_1844 1679950 - 1680168 + | hypothetical protein malY 1680362 - 1681534 + | MalY TERM 1900 1681534 - 1681575 + F 84 -8.7 -4.652 | overlap 1681535 CCGCGCTGTTCGCTA ACCCCAATTGCGCAACG TAAAAAAT CGTTGCGCAATCGTGGA TTTTTACCCTGCTTT TERM 1901 1681535 - 1681574 + F 85 -12.2 -3.38036 | overlap 1681534 CGCGCTGTTCGCTAA CCCCAATTGCGCAACG TAAAAAAT CGTTGCGCAATCGTGG ATTTTTACCCTGCTT TERM 1902 1681915 - 1681895 - g 74 -11.1 -3.20387 | opp_overlap 1681894 1681895 1681896, overlap 1681893 TGAAAACATTGAAGA TGCAGCCCG TCA CGGCCTGCA CTATGTCGAGCTGCG TERM 1903 1682619 - 1682607 - g 75 -4.7 -4.80882 | AGCGCAGAGGAAAAA CGCGC ACT GCGAG AAAAAGTCGCTGCGA add 1681638 - 1682639 + | adenosine deaminase TERM 1904 1682646 - 1682670 + T 95 -11.5 -4.56597 | opp_overlap 1682646 1682648, overlap 1682648 GCGAAGTAACAAAAA TAGATGGTGCA AAT TGCACCATCCA TTTTTCACGCAAGGC TERM 1905 1682670 - 1682646 - T 100 -13.7 -5.1963 | opp_overlap 1682646 1682648, overlap 1682648 GCGAAGTAACAAAAA TAGATGGTGCA AAT TGCACCATCCA TTTTTCACGCAAGGC TERM 1906 1682648 - 1682668 + T 83 -14.1 -2.60032 | opp_overlap 1682646 1682648, overlap 1682646 GAAGTAACAAAAATA GATGGTGCA AAT TGCACCATC CATTTTTCACGCAAG TERM 1907 1682668 - 1682648 - T 100 -14.1 -4.21997 | opp_overlap 1682648 1682646, overlap 1682646 GAAGTAACAAAAATA GATGGTGCA AAT TGCACCATC CATTTTTCACGCAAG SDY_1847 1683715 - 1682675 - | putative oxidoreductase TERM 1908 1683344 - 1683330 - G 70 -6.4 -4.16842 | TTTAGCGTCAAGAAA TCGCTA TCC CAGCGA CGGTTATGGAATACA TERM 1909 1684110 - 1684132 + H 79 -8.5 -4.3208 | gap 1 GCGCTTGTAGAGCGA CATGCTACCC GTCA GGGT-GCATG TTTTCACTTGTCGGA SDY_1848 1684362 - 1684577 + | oriC-binding nucleoid-associated protein TERM 1910 1684693 - 1684712 + F 83 -9.2 -4.3014 | TATTGGAGGCTGGTT GCTTGGCC CGTT GGCCTAGC TTTTAGTCGCTCTGT SDY_1849 1684745 - 1685095 + | hypothetical protein SDY_1850 1685172 - 1685753 + | Na(+)-translocating NADH-quinone reductase subunit E SDY_1851 1685753 - 1686331 + | electron transport complex protein RnfB TERM 1911 1686372 - 1686356 - g 87 -4.5 -5.28176 | overlap 1686362 TGCATTCAGAAAAAA TAAAATC TGG GATTTCA ACGGCGGCATCCATC TERM 1912 1686421 - 1686448 + G 100 -12.7 -4.54821 | overlap 1686423 AGTCCAACGGTACAC CCCTGCGCCAG GTACCA CTGGCGCAGCG TTTTGTCATTCCACT TERM 1913 1686423 - 1686446 + G 84 -13.9 -2.5882 | overlap 1686421 TCCAACGGTACACCC CTGCGCCAG GTACCA CTGGCGCAG CGTTTTGTCATTCCA TERM 1914 1688581 - 1688568 - g 71 -9.5 -3.54424 | opp_overlap 1688568 GTTGATCCGCGCAAA GCGGC AGTT GCCGC GGCTATTGCCCGCGT SDY_1852 1686324 - 1688642 + | electron transport complex protein RnfC TERM 1915 1688737 - 1688753 + G 79 -2.2 -5.27477 | opp_overlap 1688737, overlap 1688738 CAGCCGTGCCAGGAA TCGCAG CGCAA CTGTGG TTTTTTGGTTGGGGT TERM 1916 1689524 - 1689543 + G 70 -6.4 -4.17048 | overlap 1689523 1689526 CCCGGTTACCGCTTC TACGACCA ATCG TGGTCGTC TTATTTTCGGCGCGC TERM 1917 1689526 - 1689541 + G 73 -9 -3.68435 | overlap 1689523 1689524 CGGTTACCGCTTCTA CGACCA ATCG TGGTCG TCTTATTTTCGGCGC rnfD 1688643 - 1689701 + | electron transport complex protein RnfD SDY_1854 1689705 - 1690325 + | electron transport complex protein RnfG TERM 1918 1690719 - 1690695 - g 90 -7.8 -5.00616 | opp_overlap 1690695 1690694, overlap 1690696 TTCGCCGCCAAAAAA GGTCCAGCGC TTTCG GCACTGGACG GCTTTTCAATTGGTA TERM 1919 1690718 - 1690696 - g 85 -11.3 -3.60048 | opp_overlap 1690695 1690694, overlap 1690695 TCGCCGCCAAAAAAG GTCCAGCGC TTTCG GCACTGGAC GGCTTTTCAATTGGT TERM 1920 1690737 - 1690751 + G 72 -11.4 -2.50195 | overlap 1690736 1690733 1690738 1690744 TTTTCAATTGGTATG GGCGCA ACC TGCGCC ATGTTCGTGCTGGGT ydgQ 1690329 - 1691024 + | SoxR-reducing system protein RsxE nth 1691024 - 1691659 + | endonuclease III TERM 1921 1691685 - 1691666 - f 84 -8.6 -4.66987 | opp_overlap 1691666 1691665 GACATCTGAAGAAAA GGGGTAAC ACCG ATTACCCC ATTGATAACCTTTCT TERM 1922 1692325 - 1692292 - g 82 -2.5 -5.37593 | gap 1, opp_overlap 1692295 1692301 1692311 1692314, overlap 1692295 1692296 1692302 CTGCAAACCAAAAAA CAACTGAAAGCG-TCA GTT TGAACGCTTTCAAACA ACCGAAGGCGTTCTA TERM 1923 1692322 - 1692295 - g 93 -8.6 -4.76088 | gap 1, opp_overlap 1692295 1692301 1692311 1692314, overlap 1692292 1692296 1692302 CAAACCAAAAAACAA CTGAAAGCG-TCA GTT TGAACGCTTTCAA ACAACCGAAGGCGTT TERM 1924 1692321 - 1692296 - g 74 -9.9 -3.43212 | gap 1, opp_overlap 1692295 1692301 1692311 1692314, overlap 1692295 1692292 1692302 AAACCAAAAAACAAC TGAAAGCG-TCA GTT TGAACGCTTTCA AACAACCGAAGGCGT TERM 1925 1692717 - 1692701 - g 76 -3.5 -4.91511 | opp_overlap 1692716 ATGCTATGAGAAAAA CGACCCG CGT CTGGACG GTGCATTCACCATGT tppB 1692270 - 1693772 + | putative tripeptide transporter permease TERM 1926 1693818 - 1693796 - f 86 -13.5 -3.30635 | opp_overlap 1693796 GAAACTCTTTTACAA GCCGCTAAC TTTTC GTTAGCGGC TTTTTTTTTGTTCAG TERM 1927 1693796 - 1693818 + F 100 -13.5 -6.36459 | opp_overlap 1693796 GAAACTCTTTTACAA GCCGCTAAC TTTTC GTTAGCGGC TTTTTTTTTGTTCAG TERM 1928 1693995 - 1693983 - g 84 -4.1 -5.28481 | opp_overlap 1693983 GATTTAATGAAAAAA CGTCT CGA AAACG GTGACGATTACTTTG TERM 1929 1694168 - 1694158 - g 70 -5.4 -4.36914 | TTTCCCGCTATAAAA CCAT CGA ATGG CTGAATTACATCGCC gst 1693878 - 1694483 + | glutathionine S-transferase pdxY 1695390 - 1694527 - | pyridoxamine kinase TERM 1930 1695436 - 1695407 - R 100 -10.7 -4.82901 | opp_overlap 1695410, overlap 1695408 1695410 TTCCCTGTATAAAAA CCAGGGGGAGTGA TTTC TCACTCCCCCTTT CCACTTAATGCATTA TERM 1931 1695435 - 1695408 - R 93 -14.2 -3.49419 | opp_overlap 1695410, overlap 1695407 1695410 TCCCTGTATAAAAAC CAGGGGGAGTGA TTTC TCACTCCCCCTT TCCACTTAATGCATT TERM 1932 1695410 - 1695433 + r 100 -16.8 -3.67976 | opp_overlap 1695410 1695408 1695407 CCTGTATAAAAACCA GGGGGAGTGA TTTC TCACTCCCCC TTTCCACTTAATGCA TERM 1933 1695433 - 1695410 - R 100 -16.8 -3.31915 | opp_overlap 1695410, overlap 1695408 1695407 CCTGTATAAAAACCA GGGGGAGTGA TTTC TCACTCCCCC TTTCCACTTAATGCA tyrS 1696723 - 1695449 - | tyrosyl-tRNA synthetase TERM 1934 1695831 - 1695848 + g 84 -4.1 -5.21506 | gap 1, overlap 1695806 1695803 1695828 1695832 AGTACATACTGGGCG C-GCGGTG CTT TACCGCTG TTTTTATCTTCTTCT TERM 1935 1695832 - 1695846 + g 76 -7.8 -4.20977 | overlap 1695806 1695803 1695828 1695831 GTACATACTGGGCGC GCGGTG CTT TACCGC TGTTTTTATCTTCTT pdxH 1697508 - 1696852 - | pyridoxamine 5'-phosphate oxidase TERM 1936 1697256 - 1697277 + g 81 -5.9 -4.78107 | gap 1, overlap 1697259 CTTTACGGCTGCCGA GGT-TGGTGT AAA ACACCATGCC TTTTTCGTCGTAATG TERM 1937 1697436 - 1697451 + g 72 -7.5 -3.93262 | overlap 1697448 CGGCGGGAAGATCGC GGCGG CGTAAC CCGCC TTTGGTGTATTCACG ydhA 1697815 - 1697567 - | hypothetical protein anmK 1699103 - 1697994 - | anhydro-N-acetylmuramic acid kinase TERM 1938 1698120 - 1698158 + g 100 -16.8 -3.51924 | opp_overlap 1698134 AGCCAATGCTTCCAT GTCATCGCCACTAATGCC AAC GGCATCGGTGGTGGTGAC TTCTGTGCCTGGCAG slyB 1699377 - 1699844 + | putative outer membrane protein TERM 1939 1699849 - 1699884 + T 86 -11.8 -3.5332 | opp_overlap 1699849, overlap 1699846 1699838 CTCCGCGCTAAATAA GTTTGCGAGTGGTCAG GTTA CTGACCACTCGCCCCC TTCATTTCACCCTTT TERM 1940 1699884 - 1699849 - T 95 -11.8 -3.90744 | opp_overlap 1699849 1699846 1699838 CTCCGCGCTAAATAA GTTTGCGAGTGGTCAG GTTA CTGACCACTCGCCCCC TTCATTTCACCCTTT slyA 1700325 - 1699891 - | transcriptional regulator SlyA SDY_1866 1700526 - 1700762 + | hypothetical protein TERM 1941 1701431 - 1701417 - gf 73 -4.2 -4.79955 | opp_overlap 1701417 ATAGTGATAACAAAA CGTTAC AGG GTCACG TTTCCAGTATCGGTC SDY_1867 1700723 - 1701622 + | hypothetical protein SDY_1868 1701636 - 1701962 + | hypothetical protein TERM 1942 1703555 - 1703576 + G 73 -11.5 -2.6914 | opp_overlap 1703554 1703553, overlap 1703554 1703556 CCGTCATCATCAACC TGCCGCCCG TGAG CTGGCGGCA ATTGTCTGGCGGCTG SDY_1869 1702041 - 1703648 + | hypothetical protein sodC 1704170 - 1703649 - | superoxide dismutase TERM 1943 1703686 - 1703696 + g 72 -8.2 -3.78329 | TAGTGTTCACCGCCA CCGC CCA GCGG TTTAGGTTGATCGGA TERM 1944 1703897 - 1703924 + g 81 -11.2 -3.69902 | gap 1, opp_overlap 1703896 1703894, overlap 1703919 1703921 TTTGTGGATCAAGAT GCCCGC-CTGCGG ATT CCGCGGCGCTGGC TTTGCCATCTTTGGT SDY_1871 1705147 - 1704251 - | hypothetical protein SDY_1873 1705573 - 1705196 - | hypothetical protein SDY_1872 1705538 - 1706137 + | hypothetical protein TERM 1945 1706124 - 1706143 + Tr 81 -4.9 -5.24129 | overlap 1706125 AAACCATTATTGCGA CGCCTGC CGTTTA GCAGGCA TTTTTTATCACCAGA TERM 1946 1706125 - 1706142 + Tr 72 -8.4 -3.73995 | overlap 1706124 AACCATTATTGCGAC GCCTGC CGTTTA GCAGGC ATTTTTTATCACCAG SDY_1874 1706647 - 1706252 - | iso-IS1 ORF2 SDY_1875 1706842 - 1707045 + | hypothetical protein nemA 1707014 - 1708045 + | N-ethylmaleimide reductase TERM 1947 1708404 - 1708391 - g 71 -2.3 -5.01732 | overlap 1708392 AAGCGTGCGAAAAAA TCCGT CAAA ACGGG GGTAACGTGACCCGT gloA 1708126 - 1708533 + | glyoxalase I TERM 1948 1708539 - 1708566 + F 73 -9.9 -3.46647 | gap 1, overlap 1708537 GGGCAACTAATCTCC TGCCGGGCGTGA ACTCC TCGCGCCCG-CA TCTTTACTGCATCGA TERM 1949 1708659 - 1708673 + G 77 -7.1 -4.45077 | opp_overlap 1708658 TAACGCTCAACTTAC CGGTC TGTGC GACCG TTTTCGTGGTTTTTA rnt 1708636 - 1709283 + | ribonuclease T TERM 1950 1710573 - 1710585 + T 74 -6.9 -4.19624 | GATCTGGTGATTCAG GTGGC AAC GCCGC TTTCTGTTGCCAGTG TERM 1951 1712406 - 1712418 + T 75 -6.3 -4.46112 | opp_overlap 1712397 1712405 GTACAACTACCAGAG TCTCT GCC AGAGA TTTATTTGCATAGAG TERM 1952 1713645 - 1713623 - T 73 -11.3 -2.73338 | overlap 1713612 1713622 1713636 1713639 ACAAGCCGCGCAAAC GCGCCACTA TACAC CAGTGGCGC TCTCCGCCAACGATC TERM 1953 1714031 - 1713998 - T 83 -9.6 -4.12532 | opp_overlap 1714001 1714012 1714021, overlap 1714001 TTGGGGATAGAGAAA GGACTGACGGATGC CCGTTC GCATCCGTCAGTAT TGCGAGACGGATTAT TERM 1954 1714028 - 1714001 - T 93 -15.7 -3.09116 | opp_overlap 1714001 1714012 1714021, overlap 1713998 GGGATAGAGAAAGGA CTGACGGATGC CCGTTC GCATCCGTCAG TATTGCGAGACGGAT TERM 1955 1714001 - 1714028 + T 93 -15.7 -3.01791 | opp_overlap 1713998 1714001, overlap 1714012 1714021 GGGATAGAGAAAGGA CTGACGGATGC CCGTTC GCATCCGTCAG TATTGCGAGACGGAT ydhD 1714390 - 1714043 - | hypothetical protein TERM 1956 1715043 - 1715032 - g 70 -3.6 -4.65078 | overlap 1715020 ATACCGTCAATAAAA CGGC CTCA GCCA GCTTTACCGAAAAGT TERM 1957 1715134 - 1715105 - g 75 -4.3 -4.81249 | gap 1, overlap 1715109 TGTGAAAGTCAAAAA TGCAGCGTCAGGAA CCC TTGCCGACGC-ACA CAAAGCGAAGGTGCA TERM 1958 1715167 - 1715154 - g 84 -8.1 -4.62471 | GCGAAGGTGCAAAAA GCCAC AAAA GTGGC AATGAATAAGCTGAT ydhO 1714725 - 1715552 + | putative lipoprotein TERM 1959 1715585 - 1715555 - f 79 -9.2 -4.09511 | gap 1, opp_overlap 1715551 1715556 1715557, overlap 1715556 AACACTTCGCTAAAA CTTTACCCTGTTG TTACGG CAACAGGGT-AAG TTCATCTTTTGTCTC TERM 1960 1715556 - 1715585 + F 88 -12.3 -3.59432 | opp_overlap 1715555 1715556, overlap 1715551 1715557 ACACTTCGCTAAAAC TTTACCCTGTTGT TACG GCAACAGGGTAAG TTCATCTTTTGTCTC TERM 1961 1715557 - 1715584 + F 83 -13.6 -2.74575 | opp_overlap 1715555 1715556, overlap 1715556 1715551 CACTTCGCTAAAACT TTACCCTGTTGT TACG GCAACAGGGTAA GTTCATCTTTTGTCT sodB 1715680 - 1716261 + | superoxide dismutase TERM 1962 1716374 - 1716395 + T 100 -14.5 -5.38326 | opp_overlap 1716368 TGTCAGCAACTGTAA CGCAGAAGG TTAT CCTTCTGCG TTTTTGTTTAATTAG TERM 1963 1716423 - 1716439 + T 70 -5.1 -4.42653 | overlap 1716413 1716411 TAGCTGTTAGCAACG CAAACTG TTT CAGGTTG TTTTCTGGCTGACAT SDY_1883 1717576 - 1716407 - | putative transport protein TERM 1964 1717693 - 1717659 - H 72 -3 -4.96276 | ACAAAAAAATGAAAA TAACAAAAAGAGAAAA CAC TTTTGCCATTTTGCTA ACAAACAGGAAGGAG TERM 1965 1718179 - 1718145 - g 79 -4.4 -4.90079 | gap 1, opp_overlap 1718145, overlap 1718147 ATGGCAACAATAAAA GATGTAGC-GAAACG AGCAAA CGTTTCCACTACAAC TGTGTCACACGTGAT TERM 1966 1718227 - 1718203 - g 91 -9.3 -4.71828 | overlap 1718224 ACGTGATCAACAAAA CACGTTTCGTC GCT GAAGAAACGCG CAACGCCGTGTGGGC TERM 1967 1718667 - 1718655 - g 72 -10.5 -3.06796 | CGTTATCTGATTGAA CGCGG TCA CCGCG AAATCGGCGTCATCC TERM 1968 1718704 - 1718725 + G 81 -8.7 -4.37092 | gap 1, opp_overlap 1718704 1718702 CGCTGGAACGTAACA CCGGCGCAGG CCG CCT-TGCCGG TTTTATGAAGGCGAT TERM 1969 1718954 - 1718974 + G 74 -7.5 -4.07687 | opp_overlap 1718957 1718958, overlap 1718957 1718958 GCTGATCGGTTATGA TAACGTGCG CAA CGCGCGCTA TTTTACGCCGGCGCT TERM 1970 1718958 - 1718972 + G 73 -9.2 -3.63744 | opp_overlap 1718957 1718958, overlap 1718957 1718954 ATCGGTTATGATAAC GTGCGC AAC GCGCGC TATTTTACGCCGGCG purR 1718130 - 1719155 + | DNA-binding transcriptional repressor PurR ydhB 1720084 - 1719152 - | putative DNA-binding transcriptional regulator ydhC 1720197 - 1721408 + | inner membrane transport protein YdhC cfa 1721699 - 1722847 + | cyclopropane fatty acyl phospholipid synthase TERM 1971 1722859 - 1722879 + T 93 -14 -3.60475 | opp_overlap 1722849 CTAAAGGCTATTCTA TCGCCCCC TCTCC GGGGGCGA TTTCAGATCAGGCTT ribE 1723528 - 1722887 - | riboflavin synthase subunit alpha TERM 1972 1723086 - 1723062 - G 70 -3.5 -4.69027 | gap 1, overlap 1723054 1723063 1723064 AAATGGACGCAAAAA CGCGTTGGCG TGACTT CGCCGACG-G TCAGGCTAATACCGT SDY_1889 1723978 - 1724373 + | iso-IS1 ORF2 TERM 1973 1724459 - 1724476 + F 80 -6.2 -4.85129 | overlap 1724474 CTGCTTCTTCTTTTT GCTGCC CATTCA GGCGGC TTTTTAGTCTCTCAT ydhE 1724517 - 1725890 + | multidrug efflux protein TERM 1974 1725897 - 1725927 + T 80 -6.9 -4.57073 | gap 1, opp_overlap 1725895 1725900, overlap 1725900 TCCCGCTAATAAAGA CA-AGGCGCAACCT TCGC GGGTTGCACCTGTG TTTTTACGCAGGCTG TERM 1975 1725900 - 1725923 + T 72 -8.8 -3.53855 | opp_overlap 1725895 1725900, overlap 1725897 CGCTAATAAAGACAA GGCGCAACCT TCGC GGGTTGCACC TGTGTTTTTACGCAG TERM 1976 1725923 - 1725900 - T 84 -10.3 -3.96841 | opp_overlap 1725900 1725897, overlap 1725895 CGCTAATAAAGACAA GGCGCAACC TTCGCG GGTTGCACC TGTGTTTTTACGCAG SDY_1891 1727187 - 1725931 - | hypothetical protein TERM 1977 1727364 - 1727353 - R 70 -2.2 -5.07486 | overlap 1727336 GATCCTGAATAAAAA TCGC CTTT GCAA ATCAACAAAATATAG TERM 1978 1727623 - 1727654 + r 80 -6.7 -4.76075 | gap 2, overlap 1727648 1727650 TTGACATGGTGGGGG TC-GGTG-GTTCGAG TCCA CTCGGACGCACCAGA TTTTCTTAATCTGGT SDY_1894 1728664 - 1727951 - | IS600 ORF2 TERM 1979 1728806 - 1728848 + r 91 -2.1 -5.92337 | gap 1, overlap 1728810 TCGCCATTGTTCGAT TAAC-GCGTATTTTTCAGCG ACTC CTGTGCAAAATACGCTGTTG TTTTTTTTAATATAT SDY_1895 1729107 - 1728805 - | IS600 ORF1 TERM 1980 1729286 - 1729302 + H 75 -10.9 -3.05844 | opp_overlap 1729284 1729282 1729281 AACTCAAAAATGATG CTGGCAA ATA TTGCCAG TATTGAAATACCGCC TERM 1981 1730537 - 1730520 - g 72 -4.9 -4.6391 | gap 1, opp_overlap 1730523, overlap 1730523 AACAATTACAGAAAA CAGGGGAT GAA ATCCC-TG ATGTTGGTGAAGATT SDY_1896 1729496 - 1730653 + | hypothetical protein SDY_1897 1731541 - 1730729 - | hypothetical protein ydhU 1732330 - 1731545 - | hypothetical protein SDY_1899 1733046 - 1732327 - | putative oxidoreductase, Fe-S subunit SDY_1900 1733706 - 1733059 - | hypothetical protein SDY_1901 1733875 - 1734177 + | IS600 ORF1 SDY_1902 1734651 - 1734833 + | iso-IS1 ORF2 SDY_1903 1734830 - 1735045 + | iso-IS1 ORF2 TERM 1982 1735125 - 1735094 - T 77 -8.9 -3.83675 | gap 1, opp_overlap 1735091, overlap 1735096 CAACTGAAGCAAGAA TATCAGGATGAAGC TTACC GCCTCATCCTGA-A TGGTCATTTTACCAG TERM 1983 1735124 - 1735096 - T 93 -14 -3.4945 | opp_overlap 1735091, overlap 1735094 ACTGAAGCAAGAATA TCAGGATGAAGC TTACC GCCTCATCCTGA ATGGTCATTTTACCA SDY_1904 1735338 - 1735129 - | hypothetical protein TERM 1984 1736855 - 1736867 + G 81 -9.1 -4.08706 | opp_overlap 1736855 1736854 1736852 GCAAAAGGTAAATAC CCGCT GGA AGCGG TTTCTATCATGGCGA pykF 1735895 - 1737307 + | pyruvate kinase TERM 1985 1737340 - 1737355 + F 100 -11.8 -5.99154 | opp_overlap 1737340 AATTTGTATATCGAA GCGCCC TGAT GGGCGC TTTTTTTATTTAATC TERM 1986 1737355 - 1737340 - f 79 -11.8 -3.12847 | opp_overlap 1737340 AATTTGTATATCGAA GCGCCC TGAT GGGCGC TTTTTTTATTTAATC insA 1737495 - 1737770 + | IS1 ORF1 insB 1737982 - 1738191 + | IS1 ORF2 TERM 1987 1738556 - 1738531 - g 70 -9.7 -3.17212 | gap 1 TGACCAGCTGAGCAA CGACGTGAACGC AAT GCGTTC-CGACG TTCAGGCTGCTAAAG lpp 1738394 - 1738630 + | murein lipoprotein TERM 1988 1738670 - 1738652 - T 100 -14.6 -4.74103 | opp_overlap 1738652 CTGTGAAGTGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTCTGCTA TERM 1989 1738652 - 1738670 + T 100 -14.6 -5.74122 | opp_overlap 1738652 CTGTGAAGTGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTCTGCTA ynhG 1739697 - 1738693 - | hypothetical protein ynhA 1740262 - 1739846 - | cysteine desufuration protein SufE SDY_1911 1741264 - 1740275 - | hypothetical protein TERM 1990 1740942 - 1740953 + g 77 -5.8 -4.66938 | GCAAGCGTGATCATT TCCG CCAG CGGA TTTTCTGTTCCCAGT ynhC 1742763 - 1741492 - | cysteine desulfurase activator complex subunit SufD TERM 1991 1742523 - 1742505 - GR 77 -3 -5.1356 | opp_overlap 1742508, overlap 1742506 1742508 GTCCATCAACAAAAA CCAGCCGC ACA GCGTCTAA TGTTAACGCTAAGAC sufC 1743484 - 1742738 - | cysteine desulfurase ATPase component ynhE 1744261 - 1743494 - | hypothetical protein SDY_1915 1745287 - 1744550 - | phage Mu Mom-like protein TERM 1992 1744804 - 1744794 - G 70 -4 -4.63218 | TGGCTGCCAATAAAA TCAA AAT TTGA CGCCTGATACACAAC SDY_1916 1746072 - 1745479 - | putative DNA-invertase SDY_1917 1746264 - 1746758 + | hypothetical protein SDY_1918 1747631 - 1746783 - | IS600 ORF2 TERM 1993 1748403 - 1748424 + r 100 -12.3 -5.28176 | gap 1 TGTTTATTCCTTGCC GCCCGCGTCT CCC AG-CGCGGGC TTTTTTGTCCATAAG TERM 1994 1748460 - 1748443 - R 95 -12.7 -4.30719 | TTTGTCCATAAGAAA GCCCCTC CGGA GAGGGGC TGGAGAGTGGCGCGA TERM 1995 1748724 - 1748702 - R 100 -14.8 -5.72616 | ACGGATACAAAAAAA GCCAGCCACC AGG GGAGGCTGGC AAACTCGTAGAGCAA TERM 1996 1748927 - 1748912 - R 100 -7.5 -5.60993 | CTGGGTACAAAAAAA CCCGC GCATCG GCGGG TTCGGCTGCGTGGCA SDY_1919 1750015 - 1749620 - | iso-IS1 ORF2 SDY_1920 1750428 - 1750730 + | IS600 ORF1 TERM 1997 1750921 - 1750896 - g 74 -9.7 -3.55444 | overlap 1750900 TCCGCACTCGCGAAA CATATGGAGCC CGGC GGCTCCAGACG GAGCTGGCAGAGAAT TERM 1998 1750917 - 1750900 - g 77 -11.3 -3.24708 | overlap 1750896 CACTCGCGAAACATA TGGAGCC CGGC GGCTCCA GACGGAGCTGGCAGA SDY_1921 1750871 - 1751584 + | IS600 ORF2 SDY_1922 1752287 - 1751625 - | hypothetical protein SDY_1923 1752652 - 1752281 - | hypothetical protein TERM 1999 1752971 - 1752956 - R 72 -10.4 -2.87564 | opp_overlap 1752958 1752966, overlap 1752958 GTACTTCTGGACATA CACCCG TAAC CGGGTG TTGGCGCTCCGTCTT SDY_1924 1753402 - 1753199 - | hypothetical protein TERM 2000 1753682 - 1753652 - g 72 -11.2 -3.07816 | overlap 1753634 1753675 CTGTTAGTCAGCTAA TGGCTGGCATCAAC GCC ATAAATGCCAGCCA CGCAGCACAGCTCGC SDY_1925 1753498 - 1754211 + | repressor protein CI SDY_1926 1754305 - 1755774 + | site-specific DNA-methyltransferase TERM 2001 1755842 - 1755859 + G 72 -6.3 -4.36903 | overlap 1755833 CCTGCCCAGAGCGCA GCAGAAT GAGC GTTCTGC TTTGTGTTTGCTGGC TERM 2002 1756082 - 1756095 + G 72 -8.1 -3.89346 | opp_overlap 1756082 CGATCGCCCAGTGAA CAGCC CGAA GGCTG TTTATCAGATCGAAC SDY_1927 1755771 - 1756724 + | type II site-specific deoxyribonuclease TERM 2003 1756745 - 1756762 + F 100 -9.8 -5.31519 | opp_overlap 1756730 1756744 1756742 1756745 GGACCAGATAAATAG CCCGGC CCATGC GCCGGG TTTTTCTTTGCATAT TERM 2004 1757397 - 1757410 + F 100 -8.1 -5.71712 | opp_overlap 1757388 1757397 AATCGAGGCGATACA GACGC GCCA GCGTC TTTTTTTGTATCGAC SDY_1928 1757618 - 1758034 + | hypothetical protein SDY_1929 1758031 - 1758264 + | hypothetical protein SDY_1930 1758938 - 1758417 - | IS911 ORF2 TERM 2005 1758825 - 1758836 + gT 77 -5.8 -4.63218 | opp_overlap 1758821 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SDY_1931 1759257 - 1758907 - | IS911 ORF2 TERM 2006 1759178 - 1759198 + gr 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_1932 1759586 - 1759284 - | IS911 ORF1 SDY_1933 1759633 - 1759800 + | prophage Kil protein insA 1759856 - 1760131 + | IS1 ORF1 TERM 2007 1761829 - 1761814 - T 100 -11.8 -5.71712 | TGTGACAGAAAAAAA CGGCGC ATAA GCGCCG CTCATGGTGAATTCT pspE 1762160 - 1761846 - | thiosulfate:cyanide sulfurtransferase (rhodanese) pspD 1762456 - 1762235 - | peripheral inner membrane phage-shock protein pspC 1762824 - 1762465 - | DNA-binding transcriptional activator PspC pspB 1763048 - 1762824 - | phage shock protein B pspA 1763770 - 1763102 - | phage shock protein PspA TERM 2008 1763187 - 1763197 + g 82 -3.2 -5.27335 | opp_overlap 1763183 AGTTCGGCAAACTGA TCGT CCA GCGA TTTTTGTTTACCGAA TERM 2009 1763695 - 1763707 + g 81 -9.1 -4.03234 | overlap 1763705 GACGCACCAGTTTCT GCGGA TCT TCCGC TTTCTCTAACAGAGC TERM 2010 1764732 - 1764705 - g 74 -9.8 -3.54543 | opp_overlap 1764705 ATTGATCCCTTTAAA CGGCGTCCGCCT GAAG AAGCCAACGCCG TTTCAGAAAACACCT TERM 2011 1764815 - 1764801 - g 93 -8.6 -4.77438 | opp_overlap 1764800 1764803, overlap 1764804 ATGCAGCAGGAAAAA GAGTTG CTG CAACTC AGTTTGCAACAAGGG pspF 1763937 - 1764914 + | phage shock protein operon transcriptional activator TERM 2012 1765267 - 1765292 + T 90 -9.7 -4.44046 | gap 1, opp_overlap 1765258 CATAGACCCCAGACC GCGTACC-GCCA CGA TGGCCGGAACGC TTTCTTTGGCATCAA TERM 2013 1765958 - 1765999 + T 89 -10.9 -4.13767 | overlap 1765943 CGCGGGCGATTTTCA CCGCGTTTTCCACCGCT TCCGCACC GGTGGTGAAGAACGCGG TTTTAGCCTGCCCGC ordL 1767627 - 1766347 - | oxidoreductase TERM 2014 1768953 - 1768965 + r 73 -7.7 -4.07885 | TCGATATCGACGCTC TTGCC GCG GGCAA TTTTCGCCAGCGGTG ycjC 1769823 - 1769266 - | DNA-binding transcriptional repressor PuuR TERM 2015 1769927 - 1769912 - H 70 -9 -3.38991 | overlap 1769910 AGCCCTCGAACAATA TACGCG AAAG CGCGTA CTCGCTACTGTTCCA TERM 2016 1771618 - 1771608 - g 70 -5.4 -4.4009 | TCTGATGGCAGAAAA GCAT AAG ATGC ACGCCACTTTTATGG SDY_1947 1770973 - 1772244 + | putative glutamine synthetase SDY_1949 1773764 - 1773369 - | iso-IS1 ORF2 SDY_1950 1774498 - 1774286 - | hypothetical protein SDY_1951 1775182 - 1774574 - | putative transferase TERM 2017 1776317 - 1776327 + G 80 -5.4 -4.9792 | AGGCGGGGCAAAGTC CGTT CGT AACG TTTTTCTCTAAACTG ansP 1775398 - 1776948 + | L-asparagine permease TERM 2018 1776979 - 1776957 - T 100 -14.9 -4.19953 | opp_overlap 1776950 GAGTTAATTGCAAAA TTGCCCGGC TACGT GCCGGGCAA ATTCAGATTACTGAC SDY_1953 1778122 - 1777061 - | putative receptor TERM 2019 1777941 - 1777964 + g 72 -4.4 -4.72497 | overlap 1777942 TCCAGTTTGCGGCTT TGCGAAGTGG CGAG CCACAGCGCG TTTTCTTGCTGGCTA TERM 2020 1779035 - 1779020 - g 76 -4 -4.96848 | TGGCGCACAGAAAAA TTTAGC CAAT GCCAAA CTGGGCGTACGCATT TERM 2021 1779244 - 1779187 - g 88 -8.5 -4.65168 | opp_overlap 1779190, overlap 1779194 ACGACACGCGAAAAA CCATCAAGCAAACTCAGGCTGGGTT GCGCTATG AACGTAGCCTGAGTTCGCGGGATGA TATGAGTGTGATGAT TERM 2022 1779237 - 1779194 - g 72 -10.4 -3.4158 | opp_overlap 1779190, overlap 1779187 GCGAAAAACCATCAA GCAAACTCAGGCTGGGTT GCGCTATG AACGTAGCCTGAGTTCGC GGGATGATATGAGTG SDY_1954 1778364 - 1780067 + | putative outer membrane receptor for iron transport SDY_1955 1780465 - 1780265 - | hypothetical protein SDY_1956 1780660 - 1781055 + | iso-IS1 ORF2 TERM 2023 1781250 - 1781269 + T 89 -11.4 -4.06903 | GAGTAATTACCTTGA TGCCCGGT ATTT GCCGGGCA TTTACTTTAACGATT SDY_1957 1781713 - 1781276 - | hypothetical protein insA 1781775 - 1782050 + | IS1 ORF1 insB 1782095 - 1782472 + | IS1 ORF2 SDY_1960 1782522 - 1783202 + | hypothetical protein TERM 2024 1783873 - 1783839 - g 100 -14.9 -3.54424 | opp_overlap 1783869 CGTGATTTTCCCAAA TGGCTGGCGGGCAGC CAACC GCCGCCCGCCCGGCA TAATGGACATATCAC TERM 2025 1783869 - 1783901 + G 85 -13.5 -3.18199 | opp_overlap 1783839 1783877, overlap 1783899 1783900 CAACCGCCGCCCGCC CGGCATAATGGACAT ATC ACGCCCATTATGCCG TTACGTTAACGCTTA SDY_1961 1783218 - 1783910 + | hypothetical protein yoaE 1785464 - 1783914 - | putative transport protein TERM 2026 1784300 - 1784289 - G 72 -5.8 -4.35483 | GGTCACGATAACAAA GCTC CCGC GAGC ACGACGCAGCACGCC TERM 2027 1784777 - 1784763 - G 85 -10 -4.24342 | opp_overlap 1784762 CTGGTGACGAATAAA GTTGCG ACG CGCAAC CTGGTTAAACACTTC TERM 2028 1785682 - 1785659 - H 72 -8.2 -3.67588 | opp_overlap 1785663 TAAACGGGAGTTAAA CATATCAGAG ACGC CTCTGATTTG GCAAAGATTTACCTT TERM 2029 1786361 - 1786336 - g 100 -12.5 -4.58685 | AAACCGGTTGAAAAA GCCGCGCCAGC ACCC GCTGCCGCAGC ACCAAAAGCGGCTCC manX 1785928 - 1786899 + | PTS enzyme IIAB, mannose-specific TERM 2030 1787826 - 1787812 - g 82 -2.8 -5.28778 | opp_overlap 1787813, overlap 1787813 ACCACCGAGAAAAAA CTCACT CAA AGTGAT ATTCGTGGCGTCTTC manZ 1787767 - 1788627 + | mannose-specific PTS system protein IID TERM 2031 1788662 - 1788643 - f 71 -10.6 -2.62396 | opp_overlap 1788644 GACTGTTGTACACTA CCGGGGCC TTTT GGCCCCGT TTTTTTATCTGGAGG TERM 2032 1788644 - 1788661 + F 100 -14.1 -5.71712 | opp_overlap 1788643 ACTGTTGTACACTAC CGGGGCC TTTT GGCCCCG TTTTTTTATCTGGAG SDY_1966 1788682 - 1789140 + | hypothetical protein TERM 2033 1789151 - 1789202 + F 71 -9.8 -3.1577 | gap 1, opp_overlap 1789149 1789153, overlap 1789149 1789151 AATAAGTTATGAATT TAGCCAAAGCTATGTTTAGTGTATT TTT AATA-ATCAGACATAGCTTAGGCTA TATTACCTCTTCCCT SDY_1967 1789515 - 1790135 + | hypothetical protein rrmA 1790941 - 1790132 - | 23S rRNA methyltransferase A TERM 2034 1791058 - 1791040 - R 88 -8.1 -4.85177 | opp_overlap 1791040 AAAGCATAGTAAAAA GCCTCGC ATTCG ACGAGGC TTTATAGCGAGATTG TERM 2035 1791040 - 1791058 + r 71 -7.4 -3.86822 | opp_overlap 1791040 AAAGCATAGTAAAAA GCCTCG CATTCGA CGAGGC TTTATAGCGAGATTG TERM 2036 1791130 - 1791114 - R 70 -9.5 -2.94747 | opp_overlap 1791105 GGATTCGATCAGATA GCTGTTA CGT TAACAGC TGCCGGACCTTTCTG cspC 1791316 - 1791107 - | cold shock-like protein CspC SDY_1970 1791472 - 1791329 - | hypothetical protein SDY_1971 1792350 - 1792745 + | iso-IS1 ORF2 SDY_1972 1793049 - 1792762 - | hypothetical protein SDY_1973 1793267 - 1793124 - | hypothetical protein SDY_1974 1793426 - 1793665 + | hypothetical protein TERM 2037 1793799 - 1793769 - T 77 -6.9 -4.44046 | opp_overlap 1793769 1793772 CTCATGCTAAATAAA GAACCTGTCTG TTTAATATT CCGACAGGTTC TTACTCTCATCAGAA SDY_1975 1794600 - 1793809 - | putative regulator SDY_1976 1794666 - 1796048 + | putative transport protein TERM 2038 1796145 - 1796176 + T 76 -11.7 -2.74026 | opp_overlap 1796151, overlap 1796151 AAGATCCAAGGCATA AAAAAAGCGCGTC GAGCAG GACGCGCTTTTTA GTATTTACTTCATAT TERM 2039 1796151 - 1796170 + T 100 -10.7 -4.946 | opp_overlap 1796151, overlap 1796145 CAAGGCATAAAAAAA GCGCGTC GAGCAG GACGCGC TTTTTAGTATTTACT TERM 2040 1796170 - 1796151 - T 100 -10.7 -5.66684 | opp_overlap 1796151 1796145 CAAGGCATAAAAAAA GCGCGTC GAGCAG GACGCGC TTTTTAGTATTTACT htpX 1797072 - 1796191 - | heat shock protein HtpX TERM 2041 1797112 - 1797102 - R 80 -6.8 -4.65916 | opp_overlap 1797109, overlap 1797104 1797109 1797110 CTCAGTTTAACAAAA CGCA ATA TGCG ATACCCACATCGTAT TERM 2042 1797234 - 1797257 + r 90 -14 -3.42147 | opp_overlap 1797234 GCCGCTGTTAAAAAA TCAGGCACAA TTTC TTGTGCCTGA TTGATATTACTTGAC TERM 2043 1797257 - 1797234 - R 100 -14 -5.00616 | opp_overlap 1797234 GCCGCTGTTAAAAAA TCAGGCACAA TTTC TTGTGCCTGA TTGATATTACTTGAC prc 1799312 - 1797264 - | carboxy-terminal protease TERM 2044 1797736 - 1797746 + g 72 -8.2 -3.77219 | GGCATGATGATGTCT GGCG TTA CGCC TTTACGTTGCGTACT TERM 2045 1798887 - 1798905 + g 74 -8.1 -4.13767 | GTTATAAGTGTCGTT GCCGGTG AAATC CATCGGC TTTTCCAGTACCGAC proQ 1800030 - 1799332 - | putative solute/DNA competence effector TERM 2046 1799622 - 1799634 + g 70 -6.9 -4.06419 | overlap 1799587 GTGGCTTGCGTTCGC GGCGC GGT GCGTC TTCTTTCTCACCAGC SDY_1980 1800678 - 1800127 - | hypothetical protein TERM 2047 1800696 - 1800672 - G 72 -6.6 -4.26903 | opp_overlap 1800675 GCCAGCCTATTAAAA TAAGCATTAA ATGCG TTAATGCTCA AGATCATTCCCATCA SDY_1981 1800754 - 1801074 + | hypothetical protein SDY_1982 1801111 - 1801611 + | hypothetical protein SDY_1983 1801950 - 1802345 + | iso-IS1 ORF2 TERM 2048 1802614 - 1802632 + GF 79 -8.8 -4.08111 | overlap 1802616 GACCTGGATTGGTCG CTGGTCGA TGC TCGACCTG TTTGTCATATCTTTA TERM 2049 1802616 - 1802630 + GF 77 -10 -3.61777 | overlap 1802614 CCTGGATTGGTCGCT GGTCGA TGC TCGACC TGTTTGTCATATCTT SDY_1984 1802375 - 1802812 + | hypothetical protein SDY_1985 1802775 - 1805402 + | hypothetical protein TERM 2050 1805410 - 1805435 + F 100 -14.7 -3.9712 | overlap 1805411 1805430 1805430 CCAAATAATGCCCTC TGCTCCGGCGT GCCT GCGCCGGAGCG TTTATGCTAAACTGC TERM 2051 1805411 - 1805434 + F 93 -16 -2.97951 | overlap 1805410 1805430 1805430 CAAATAATGCCCTCT GCTCCGGCGT GCCT GCGCCGGAGC GTTTATGCTAAACTG TERM 2052 1806127 - 1806117 - g 86 -6.8 -5.02074 | CGATGCGCTAAAAAA CTGG TCA CCAG AAAGCAATCAGGAAA yebU 1805476 - 1806921 + | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 2053 1807053 - 1807064 + G 70 -7.2 -4.13767 | GATGAAAACCAGTGT GCGC ATAG GCGC TTTTGAAATCGACGA SDY_1987 1807024 - 1807275 + | hypothetical protein TERM 2054 1807306 - 1807284 - f 71 -3.3 -4.74103 | opp_overlap 1807287, overlap 1807287 TGCCTAATCCAAAAA GAACCCGTC GGCAT GGCGGGTTA TTTGTCCTGGTTATT TERM 2055 1807287 - 1807303 + F 73 -7.9 -4.12857 | opp_overlap 1807284 1807287 CTAATCCAAAAAGAA CCCGTCG GCA TGGCGGG TTATTTGTCCTGGTT TERM 2056 1807303 - 1807287 - f 70 -5 -4.47888 | opp_overlap 1807287, overlap 1807284 CTAATCCAAAAAGAA CCCGTC GGCAT GGCGGG TTATTTGTCCTGGTT TERM 2057 1807493 - 1807504 + G 72 -7.2 -4.21933 | opp_overlap 1807492 GAGCGATCAACGGAT CCGC CATG GCGG TTGTTTTCCGATTGA SDY_1988 1807296 - 1807571 + | hypothetical protein TERM 2058 1807872 - 1807851 - T 77 -7.3 -4.45738 | TACTTCAAGAATAAA GGGCAAATG CTGA CATTTCCCC AGCGCCGTTTTCGCT SDY_1990 1808691 - 1807900 - | IS600 ORF2 SDY_1991 1808751 - 1809053 + | IS911 ORF1 TERM 2059 1809159 - 1809139 - g 72 -4.6 -4.65838 | CAGATACTGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT TERM 2060 1809511 - 1809500 - g 77 -5.8 -4.63218 | opp_overlap 1809505 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SDY_1992 1809080 - 1809919 + | IS911 ORF2 TERM 2061 1809956 - 1809966 + T 72 -5.4 -4.44667 | overlap 1809946 TGGAACTGGCGAGAG CCAA TGG TTGG TTTGTTGTTCGCAGA SDY_1993 1810203 - 1809934 - | hypothetical protein TERM 2062 1810116 - 1810128 + g 100 -6.2 -5.64274 | opp_overlap 1810116 1810115 GACACTTGAAAGAAC CCGC TTTAT GCGG TTTTTTTGTGCCTGA TERM 2063 1810885 - 1810895 + G 72 -4.6 -4.64598 | opp_overlap 1810848, overlap 1810873 1810872 1810880 CCTCCGCCGGCAGTG CCGG CTA CTGG TTTTTGCAGTGGTTG ybcR 1810827 - 1811042 + | hypothetical protein TERM 2064 1811528 - 1811486 - g 100 -2.1 -5.92337 | gap 1, overlap 1811491 ATATATTAAAAAAAA CAACAGCGTATTTTGCACAG GAGT CGCTGAAAAATACGC-GTTA ATCGAACAATGGCGA SDY_1999 1811227 - 1811529 + | IS600 ORF1 SDY_2000 1811670 - 1812200 + | IS600 ORF2 TERM 2065 1812624 - 1812647 + T 93 -10.2 -4.58395 | opp_overlap 1812621 1812620, overlap 1812626 AAACGGATGAATCCG GGGAGGCCCG GGGG CGGGCCTCTG TTTTTCCGGAGTCAG TERM 2066 1812626 - 1812645 + T 100 -15 -3.90762 | opp_overlap 1812621 1812620, overlap 1812624 ACGGATGAATCCGGG GAGGCCCG GGGG CGGGCCTC TGTTTTTCCGGAGTC ipaH_4 1814404 - 1812689 - | invasion plasmid antigen TERM 2067 1814716 - 1814684 - H 87 -10.6 -4.08919 | AAATCGTAAAGGAAA CCGTAGCACGTCGT ATGCA AGAACGTGCCACGG CTGGCTGATGGATGT TERM 2068 1814952 - 1814970 + H 74 -5.9 -4.63184 | CATGACAGATTTCGC CGCCGTG ACTGC CACCGCG TTTTTCAGCTCACTT SDY_2002 1815161 - 1815556 + | iso-IS1 ORF2 TERM 2069 1815739 - 1815724 - f 72 -6.1 -4.26076 | GCAGTCTCAGCAAAA CACCG ACCAGA CGGTG AGAAGACAAAAAGAT ipaH_5 1816133 - 1817884 + | invasion plasmid antigen TERM 2070 1817949 - 1817926 - T 93 -10.2 -4.58395 | opp_overlap 1817938 1817939, overlap 1817928 CTGACTCCGGAAAAA CAGAGGCCCG CCCC CGGGCCTCCC CGGATTCATCCGTTT TERM 2071 1817947 - 1817928 - T 100 -15 -3.90762 | opp_overlap 1817938 1817939, overlap 1817926 GACTCCGGAAAAACA GAGGCCCG CCCC CGGGCCTC CCCGGATTCATCCGT SDY_2004 1818903 - 1818373 - | IS600 ORF2 SDY_2005 1819346 - 1819095 - | IS600 ORF1 SDY_2006 1819680 - 1819408 - | hypothetical protein SDY_2007 1820076 - 1819681 - | iso-IS1 ORF2 SDY_2008 1820489 - 1820791 + | IS600 ORF1 SDY_2009 1820932 - 1821462 + | IS600 ORF2 SDY_2010 1821551 - 1821796 + | hypothetical protein TERM 2072 1822860 - 1822846 - g 85 -7 -4.7373 | overlap 1822848 CTACTGCATGAAAAA GGCCGC TAC GCGGTC GGGCAGGGACCAATG ybhE 1821904 - 1822899 + | 6-phosphogluconolactonase TERM 2073 1822912 - 1822935 + T 93 -15.3 -3.10053 | TAACCGCTGATTTAC CCGGCGCAG TCTCTC CTGCGCCGG TGTATTAACCTATCT SDY_2012 1823392 - 1822940 - | hypothetical protein SDY_2013 1823839 - 1823444 - | iso-IS1 ORF2 SDY_2014 1824034 - 1824237 + | hypothetical protein ycgW 1824467 - 1824790 + | hypothetical protein TERM 2074 1824785 - 1824768 - T 71 -3.3 -4.91109 | overlap 1824770 1824771 GTTGTATTATAAAAA TATGCCC GTAT GGGCTCA AGTAATGGGTTTTAT TERM 2075 1824870 - 1824846 - T 100 -10 -5.05113 | opp_overlap 1824849, overlap 1824849 TCCACATAAATAAAA CAACGGGCGT GTTAT ACGCCCGTTT AAATATTTAACACAT TERM 2076 1824867 - 1824849 - T 100 -11.7 -4.60302 | opp_overlap 1824849, overlap 1824846 ACATAAATAAAACAA CGGGCGT GTTAT ACGCCCG TTTAAATATTTAACA TERM 2077 1824849 - 1824867 + T 93 -12.4 -3.81137 | opp_overlap 1824849 1824846 ACATAAATAAAACAA CGGGCGTG TTA TACGCCCG TTTAAATATTTAACA icdA 1826143 - 1824893 - | isocitrate dehydrogenase ymfC 1826345 - 1826968 + | 23S rRNA pseudouridine synthase E SDY_2018 1826978 - 1827439 + | putative phosphohydrolase TERM 2078 1827583 - 1827597 + G 72 -7.8 -3.86346 | opp_overlap 1827585 CAACAACAGGGATAT CAGGTC GAA GGCCTG TTTATGAAGAACTGG trmU 1827493 - 1828599 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2079 1828775 - 1828794 + G 75 -5.7 -4.59773 | gap 1, opp_overlap 1828775, overlap 1828775 TATTATTGATATGAA CC-CCAGC TCGAC GCTGGCGG TTTTTGGCGGTAGCG ycfC 1828635 - 1829276 + | hypothetical protein purB 1829280 - 1830650 + | adenylosuccinate lyase TERM 2080 1830658 - 1830689 + F 76 -9.4 -3.6968 | gap 1, overlap 1830659 1830662 TGAAATAAACTCGTA TCAGTGCCGGATGGC GAT GCTGTCCGGC-CTGC TTATTAAGATTATCC TERM 2081 1830659 - 1830688 + F 82 -12.9 -2.81326 | gap 1, overlap 1830658 1830662 GAAATAAACTCGTAT CAGTGCCGGATGGC GAT GCTGTCCGGC-CTG CTTATTAAGATTATC TERM 2082 1830662 - 1830686 + F 70 -9.9 -2.94759 | overlap 1830659 1830658 ATAAACTCGTATCAG TGCCGGATGGC GAT GCTGTCCGGCC TGCTTATTAAGATTA phoP 1830819 - 1831490 + | DNA-binding transcriptional regulator PhoP TERM 2083 1832341 - 1832331 - g 77 -8.2 -4.13014 | CCCATAGTCTGAAAA CGCC ACT GGCG GTGCTGCAAAGTACG phoQ 1831490 - 1832950 + | sensor protein PhoQ ycfD 1833017 - 1834147 + | hypothetical protein TERM 2084 1834162 - 1834188 + T 100 -15.2 -4.32201 | opp_overlap 1834160, overlap 1834163 AGTTTGGATTTAAGC CGGATGCGGCAT CAC ATGCCGCATCCC TTTTCGCTTACTTCC TERM 2085 1834163 - 1834187 + T 100 -18.7 -3.18598 | opp_overlap 1834160, overlap 1834162 GTTTGGATTTAAGCC GGATGCGGCAT CAC ATGCCGCATCC CTTTTCGCTTACTTC pepT 1835422 - 1834196 - | peptidase T potA 1835672 - 1836808 + | putrescine/spermidine ABC transporter ATPase protein potB 1836822 - 1837649 + | spermidine/putrescine ABC transporter membrane protein potC 1837646 - 1838440 + | spermidine/putrescine ABC transporter membrane protein potD 1838437 - 1839483 + | spermidine/putrescine ABC transporter periplasmic substrate-binding protein TERM 2086 1839515 - 1839492 - T 71 -9.5 -3.22091 | opp_overlap 1839493, overlap 1839493 ACGTTAATTCAGCAA GCGGGCGGT GGTATT ACCGCCCGT TTTTTAGTTAGCAAG TERM 2087 1839514 - 1839493 - T 80 -13 -2.52933 | opp_overlap 1839493, overlap 1839492 CGTTAATTCAGCAAG CGGGCGGT GGTATT ACCGCCCG TTTTTTAGTTAGCAA TERM 2088 1839493 - 1839514 + T 100 -13.7 -5.26875 | opp_overlap 1839493 1839492 CGTTAATTCAGCAAG CGGGCGGTG GTAT TACCGCCCG TTTTTTAGTTAGCAA cobB 1840460 - 1839639 - | NAD-dependent deacetylase TERM 2089 1840393 - 1840382 - G 82 -2.2 -5.41143 | overlap 1840384 1840386 TATCTCTGAAAAAAA TACG CTGA CGCA AACGCTCGCGCAGGC TERM 2090 1840396 - 1840412 + g 81 -5.8 -4.85782 | gap 1, opp_overlap 1840386 1840384 1840396 ATACGCTGACGCAAA CGCTCGC GCAG GCG-GCG TTTATTTTTACGAAA ycfX 1841387 - 1840476 - | N-acetyl-D-glucosamine kinase ycfW 1842660 - 1841416 - | outer membrane-specific lipoprotein transporter subunit LolE lolD 1843361 - 1842660 - | lipoprotein transporter ATP-binding subunit ycfU 1844553 - 1843354 - | outer membrane-specific lipoprotein transporter subunit LolC TERM 2091 1843729 - 1843717 - G 84 -10.5 -3.72051 | GGTAATAATGTTAAA CGCCG CAA CGGCG ACAATCAGGCTCAGC TERM 2092 1843823 - 1843836 + g 90 -8.1 -4.77157 | overlap 1843833 CAGTCCTGCCATTTG CTGCC TTCA GGCAG TTTTTGCTGACTTAA TERM 2093 1845470 - 1845485 + G 78 -9 -4.0031 | opp_overlap 1845454, overlap 1845455 AGGTGCCGTTGCGCC GCCATC TGCT GATGGC TTCTTTGCTGACCGT ycfT 1844815 - 1845888 + | hypothetical protein TERM 2094 1845910 - 1845893 - f 78 -12.7 -2.52543 | opp_overlap 1845893 ACTCCCGCTAAGCCA TCGCCCC AGCC GGGGCGA TTCAATTTGCTAAAC TERM 2095 1845893 - 1845910 + F 85 -12.7 -3.30701 | opp_overlap 1845893 ACTCCCGCTAAGCCA TCGCCCC AGCC GGGGCGA TTCAATTTGCTAAAC TERM 2096 1847135 - 1847120 - g 82 -3.2 -5.20333 | opp_overlap 1847121, overlap 1847121 CAGGCACAACAAAAA GCGC CGCTGGAT GCGC TGCGTAAGTTCCTCG TERM 2097 1847245 - 1847235 - g 70 -5.4 -4.4078 | opp_overlap 1847244 TCGCGCGAATTAAAA TTGC TCC GCAA CGCATTATGCGTCTT TERM 2098 1848500 - 1848488 - g 70 -6.9 -4.01564 | GAAAACATTCAGAAA GCCGC CGA ACGGC TGGCAGAACTGGTGC mfd 1846016 - 1849462 + | transcription-repair coupling factor TERM 2099 1849725 - 1849685 - g 70 -6.8 -4.11216 | gap 1, opp_overlap 1849690 1849693, overlap 1849686 1849690 1849693 GCGCTACCGGCAAAA GCCA-ACACCTGGCCGCTG CCGC CAGCGGGCAGTCGTCTGGT TGGCGAAAACAAATT TERM 2100 1849719 - 1849690 - g 72 -9.9 -3.37091 | opp_overlap 1849690 1849693, overlap 1849686 1849685 1849693 ACCGGCAAAAGCCAA CACCTGGCCGCTG CCGC CAGCGGGCAGTCG TCTGGTTGGCGAAAA TERM 2101 1849693 - 1849716 + G 77 -12.4 -2.69964 | opp_overlap 1849690 1849686 1849685 1849693, overlap 1849690 GGCAAAAGCCAACAC CTGGCCGCTG CCGC CAGCGGGCAG TCGTCTGGTTGGCGA TERM 2102 1849716 - 1849693 - g 76 -12.4 -2.54586 | opp_overlap 1849693 1849690, overlap 1849690 1849686 1849685 GGCAAAAGCCAACAC CTGGCCGCTG CCGC CAGCGGGCAG TCGTCTGGTTGGCGA ycfS 1849604 - 1850566 + | hypothetical protein TERM 2103 1850610 - 1850584 - T 100 -18.8 -5.93809 | CCTGGATAAAAAAAA TCCCCGCGACAC GGC ATGTCGCGGGGA AAAAATCAGCAGTAG ycfR 1850906 - 1850649 - | hypothetical protein TERM 2104 1850884 - 1850873 - G 70 -5.8 -4.15006 | opp_overlap 1850876 ACATGGAGCTTAAAA TCGC CGCA GCGA TGAGGGTTTTTACGT TERM 2105 1851191 - 1851181 - g 100 -2.4 -5.77853 | AATGTGTAAAAAAAA GCCG TGG CCGC CCAAAAGTGTTCGAC ycfQ 1851069 - 1851779 + | hypothetical protein TERM 2106 1851818 - 1851792 - T 100 -10.1 -5.43866 | TAAGTCGCAAAAAAA GCCCCTCAGCC TGAGC GAATGAGGGGC CAAATTGCAGAGTAC ycfJ 1852380 - 1851841 - | hypothetical protein TERM 2107 1852540 - 1852508 - R 76 -12 -2.60723 | opp_overlap 1852517, overlap 1852507 GGAGTCTGAAGGAAT GCCTGATGCGACGC TTAAC GCGTCTTATCAGGC CTACCGCTCGTACCA ndh 1853911 - 1852607 - | respiratory NADH dehydrogenase ycfP 1854859 - 1854317 - | hypothetical protein ycfO 1855907 - 1854882 - | beta-hexosaminidase TERM 2108 1855013 - 1855003 - G 70 -6.8 -4.08706 | opp_overlap 1855003 CCTTTATGATACAAA CGTG TAA CACG TTCTGCCTTGATCGG thiK 1856742 - 1855918 - | thiamine kinase TERM 2109 1856713 - 1856692 - G 91 -9.4 -4.58685 | AAACTGCGGGAAAAA GCGCGACA GCAATT CGTCGCGC GTGATGGGATTATTG ycfM 1857364 - 1856723 - | hypothetical protein ycfL 1857755 - 1857378 - | hypothetical protein ycfF 1858117 - 1857758 - | purine nucleoside phosphoramidase TERM 2110 1857893 - 1857903 + g 75 -5.4 -4.59773 | TTCGGCAATACCTTC TTGC TCA GCAA TTTTTGCCGCTACGG TERM 2111 1859934 - 1859909 - g 76 -4 -4.88736 | gap 1, opp_overlap 1859909 1859912 CAGCATGGAGAAAAA CCACACCACGC CTTAT GC-TGGTCTGG TGTTTGACATCAATG fhuE 1858440 - 1860629 + | ferric-rhodotorulic acid outer membrane transporter TERM 2112 1860647 - 1860664 + T 81 -12.7 -3.25823 | opp_overlap 1860647 AACACCTGTAAAAAA GGCAGCC ATCT GGCTGCC TTAGTCTCCCCAACG TERM 2113 1860664 - 1860647 - T 100 -12.7 -5.04987 | opp_overlap 1860647 AACACCTGTAAAAAA GGCAGCC ATCT GGCTGCC TTAGTCTCCCCAACG ptsG 1862122 - 1860689 - | glucose-specific PTS system IIBC components TERM 2114 1862345 - 1862372 + r 74 -8.4 -3.93057 | overlap 1862346 ATTTCAAACGTGGTT ATTCACCGCCCA ATTT TCGGCGGTGAAC TTTACTCGTTTTAGC TERM 2115 1862346 - 1862371 + r 78 -11.9 -2.95111 | overlap 1862345 TTTCAAACGTGGTTA TTCACCGCCCA ATTT TCGGCGGTGAA CTTTACTCGTTTTAG ycfH 1863214 - 1862417 - | putative metallodependent hydrolase holB 1864229 - 1863225 - | DNA polymerase III subunit delta' TERM 2116 1863446 - 1863458 + g 81 -9.1 -4.09864 | TGGTCACCTGCGCAG CGCCA TGA TGGCG TTTTAGCGCATCCAT TERM 2117 1863648 - 1863621 - G 72 -7.7 -3.90922 | gap 1 ATCTCCCTGAAACAA CGCCAGTGCCGC GCCAG GCGA-ACCGGCG CTTAAGCGCAATGCG TERM 2118 1863824 - 1863810 - G 71 -2.8 -4.7497 | opp_overlap 1863800 GGTAGCCAGGAAAAA CCAG GTTTCTG CTGG TGGCTCTTCAAGCGT TERM 2119 1864180 - 1864190 + g 81 -6.8 -4.59773 | CTTCCGGCCTGATAG CTGG CTA CCAG TTTTTCGAAATCAGG tdk 1864867 - 1864226 - | thymidylate kinase TERM 2120 1864408 - 1864423 + g 91 -11.8 -4.08692 | TACGATCCAGCTCGC CGCGCG CACG CGCGCG TTTTAAGCCAACTTC yceG 1865879 - 1864857 - | hypothetical protein pabC 1866691 - 1865882 - | 4-amino-4-deoxychorismate lyase TERM 2121 1866785 - 1866770 - R 100 -8.2 -5.52096 | opp_overlap 1866770 AAAGCTAAGAAAAAA GGCCCG CAAG CGGACC TTTTATATGGGTGGA TERM 2122 1866770 - 1866785 + r 72 -6 -4.55287 | opp_overlap 1866770 AAAGCTAAGAAAAAA GGCCCG CAAG CGGACC TTTTATATGGGTGGA fabF 1868052 - 1866811 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2123 1867383 - 1867408 + g 74 -10.3 -3.51329 | CATCACGCTCTTTAT CCCACGGGCGG CTCG CCGCTTGCGGG TTATCATTGCGGGTA TERM 2124 1867679 - 1867699 + g 70 -3.9 -4.68384 | overlap 1867684 ATCTTACGTGGACCA CCGTTCATC AGA GATGTGTGG TTTTCTTCGATCAGT TERM 2125 1868135 - 1868097 - R 80 -6.7 -4.84359 | gap 1, opp_overlap 1868100 1868102 1868134, overlap 1868103 1868105 CTAGTGGGACAAAAA GATAAACT-CAGGCGGTC GAAC GACCGCCTGGAGATGTTC ACTTACGCCTGGTGG TERM 2126 1868102 - 1868130 + r 71 -9.6 -3.15056 | gap 1, opp_overlap 1868097 1868103 1868105, overlap 1868100 GGGACAAAAAGATAA ACT-CAGGCGGTC GAAC GACCGCCTGGAGA TGTTCACTTACGCCT TERM 2127 1868129 - 1868103 - R 100 -13.1 -4.60808 | gap 1, opp_overlap 1868102 1868100, overlap 1868097 1868105 GGACAAAAAGATAAA CT-CAGGCGGTC GAAC GACCGCCTGGAG ATGTTCACTTACGCC TERM 2128 1868126 - 1868105 - R 90 -15.9 -2.59288 | opp_overlap 1868102 1868100, overlap 1868103 1868097 ACAAAAAGATAAACT CAGGCGGTC GAAC GACCGCCTG GAGATGTTCACTTAC acpP 1868374 - 1868138 - | acyl carrier protein fabG 1869319 - 1868585 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 2129 1869280 - 1869300 + g 90 -7.5 -4.86621 | overlap 1869282 GGCCAATTCCGCGGC TTGCACCGG TTA CCAGTGCGA TTTTTCCTTCAAAAT fabD 1870261 - 1869332 - | malonyl-CoA-[acyl-carrier-protein] transacylase TERM 2130 1869874 - 1869891 + g 73 -11.3 -2.80522 | overlap 1869873 TTGCCGCCATAGCGC CCGTACC TTCC GGTACGG CTTCTTGCATGAACT fabH 1871230 - 1870277 - | 3-oxoacyl-(acyl carrier protein) synthase III plsX 1872368 - 1871298 - | putative glycerol-3-phosphate acyltransferase PlsX TERM 2131 1872312 - 1872283 - G 78 -10.7 -3.51032 | overlap 1872284 1872287 AGTTGCGAATTAGAA TTCAGTGCCTGCA ATGC TGCAGGCACTGTC ACGGAAGGGCCAAAA TERM 2132 1872311 - 1872284 - G 85 -14.2 -2.70298 | overlap 1872283 1872287 GTTGCGAATTAGAAT TCAGTGCCTGCA ATGC TGCAGGCACTGT CACGGAAGGGCCAAA TERM 2133 1872308 - 1872287 - G 90 -14.5 -2.63347 | overlap 1872284 1872283 GCGAATTAGAATTCA GTGCCTGCA ATGC TGCAGGCAC TGTCACGGAAGGGCC TERM 2134 1872433 - 1872448 + r 70 -9 -3.34895 | opp_overlap 1872417 CCTCACTAAGCTTCA TCACGC AGAC GCGTGA TTACTTAGCGATGAC rpmF 1872622 - 1872449 - | 50S ribosomal protein L32 yceD 1873195 - 1872674 - | hypothetical protein TERM 2135 1873263 - 1873235 - R 83 -10.3 -3.74077 | opp_overlap 1873241, overlap 1873241 CGTCATAGAGTCAAA GAAAAAGGCAGCC TGT GGTTGCCTTTTGC CAATAATTCGCACAC TERM 2136 1873257 - 1873241 - R 95 -7.9 -5.31519 | opp_overlap 1873241, overlap 1873235 AGAGTCAAAGAAAAA GGCAGCC TGT GGTTGCC TTTTGCCAATAATTC TERM 2137 1873241 - 1873257 + r 83 -10.1 -4.12902 | opp_overlap 1873241 1873235 AGAGTCAAAGAAAAA GGCAGCC TGT GGTTGCC TTTTGCCAATAATTC TERM 2138 1873282 - 1873293 + r 71 -3.6 -4.78077 | overlap 1873267 1873264 TAATTCGCACACATT GCGG GTTA CTGC TTTATTTTCGTTCAG SDY_2063 1874163 - 1873768 - | iso-IS1 ORF2 SDY_2064 1874358 - 1874558 + | hypothetical protein TERM 2139 1874793 - 1874840 + T 76 -11.8 -2.60219 | opp_overlap 1874819 1874820, overlap 1874768 1874792 CGCATCCGGCAATCG GTGCTGGCGGCCTGATGCGGCG TAAA CGCCTTATCAGGCCAACCGCCC ATTATCAGGCTTATA yceC 1875823 - 1874864 - | 23S rRNA pseudouridylate synthase C SDY_2066 1876315 - 1875941 - | hypothetical protein TERM 2140 1876998 - 1876984 - g 88 -5.6 -5.18357 | GAAGCCATCAAAAAA GCCGCT GAA AGCCGC CCGGCCCCGTTCCTG TERM 2141 1878673 - 1878638 - g 72 -6.9 -4.15044 | gap 1, overlap 1878657 CGGTGGTTGAAGAAA CTGCAGCTGCC-GAAC CAATT GTTCAGGAAGCTCCAG CTCCACGCACAGAAC rne 1876396 - 1879581 + | ribonuclease E TERM 2142 1879621 - 1879602 - T 77 -10.7 -3.45634 | opp_overlap 1879602 AGCTCAAGTAATCAA GCCCTGG TAACTG CCAGGGC TTTTTTATTTCATCT TERM 2143 1879602 - 1879621 + T 100 -11.4 -5.69793 | opp_overlap 1879602 AGCTCAAGTAATCAA GCCCTGGT AACT GCCAGGGC TTTTTTATTTCATCT TERM 2144 1879734 - 1879706 - T 100 -12.4 -5.54264 | overlap 1879696 AAATAGGCAAAAAAA TGCCCGCCCCGG CGATC CCAGAGCAGGCA GACAAAACATACCCA flgL 1880721 - 1879825 - | flagellar hook-associated protein FlgL TERM 2145 1880050 - 1880038 - G 72 -10.5 -3.05384 | opp_overlap 1880038 1880040 1880048 GTTGGTTTTATCTAA CGCCG CAG CGGCG GTTTCTTTATCCGCT TERM 2146 1880038 - 1880050 + g 76 -10.5 -3.33097 | opp_overlap 1880038, overlap 1880040 1880048 GTTGGTTTTATCTAA CGCCG CAG CGGCG GTTTCTTTATCCGCT TERM 2147 1880040 - 1880051 + g 77 -7.2 -4.56969 | opp_overlap 1880038, overlap 1880038 1880048 TGGTTTTATCTAACG CCGC AGCG GCGG TTTCTTTATCCGCTT flgJ 1883368 - 1882427 - | peptidoglycan hydrolase flgI 1884465 - 1883368 - | flagellar basal body P-ring protein flgH 1885175 - 1884477 - | flagellar basal body L-ring protein TERM 2148 1885220 - 1885202 - R 81 -8.1 -4.50686 | opp_overlap 1885202 TCAAAAATCAATAAA CCGGTGA ACCTG CCACCGG TTATGCCTTAGAGTT TERM 2149 1886099 - 1886119 + r 82 -7.6 -4.66987 | gap 1 CCTCTCCCCAAAGGG GCGAG-GGA ATAG TCCGCTCGC TTTTATTGCAATGTC TERM 2150 1886829 - 1886845 + r 70 -9.3 -3.35371 | opp_overlap 1886829, overlap 1886831 GCATTGGCCAGATTA CTGGCGG TTA CCGCCTG TTGATTCAGCGTCTG TERM 2151 1886831 - 1886843 + r 74 -10.5 -3.24329 | opp_overlap 1886829, overlap 1886829 ATTGGCCAGATTACT GGCGG TTA CCGCC TGTTGATTCAGCGTC flgE 1888127 - 1886919 - | flagellar hook protein FlgE TERM 2152 1887193 - 1887205 + g 70 -5.5 -4.32951 | opp_overlap 1887189 1887188, overlap 1887189 GCCAGTACAATCTGC CCCAG CAG TTGGG TTTGTTCATTGGAAT TERM 2153 1887911 - 1887854 - G 89 -13.7 -3.21593 | opp_overlap 1887836, overlap 1887852 1887859 TACGGCTGTAGAACA CCGAACCGTTGCTATCTACCAG-ACGG AAAAAA CCGTTCTGGCTGATAGCAACG-TCCAG ACCACGCCCGGTGTT TERM 2154 1887907 - 1887859 - G 85 -13.3 -3.21726 | gap 1, opp_overlap 1887836, overlap 1887852 1887854 CTGTAGAACACCGAA CCGTTGCTATCTACCAG-ACGG AAAAAA CCGTTCTGGCTGATAGCAACGT CCAGACCACGCCCGG flgD 1888847 - 1888152 - | flagellar basal body rod modification protein TERM 2155 1888400 - 1888419 + g 86 -7.1 -4.88736 | opp_overlap 1888400 GTTCACCAATATCAA TGGTGCG CACAAC CGCGCCA TTTTTATCGGTGATG flgC 1889263 - 1888859 - | flagellar basal body rod protein FlgC TERM 2156 1889237 - 1889225 - G 72 -10.5 -3.05816 | GGACTGGGCAGTTAA CGCCG ACC CGGCG ATATCAAAAATATTC flgB 1889683 - 1889267 - | flagellar basal body rod protein FlgB TERM 2157 1889509 - 1889493 - G 70 -10.9 -2.82834 | GAGGTCATCATCAGA GCAACCA CAC TGGTTGC ATCCCGTCCACGTTG TERM 2158 1889624 - 1889642 + g 72 -10.2 -3.38991 | overlap 1889623 CACTTCCTGACGCTG GGCGCGCA GAT TGAGCGCC TCTTGTTGAAAACGT SDY_2079 1890066 - 1890461 + | iso-IS1 ORF2 flgA 1890612 - 1891271 + | flagellar basal body P-ring biosynthesis protein FlgA TERM 2159 1891603 - 1891576 - g 73 -4 -4.86621 | overlap 1891577 1891580 ACGGTGAACTAAAAA TGGACACCGGCA AAAT TGCCGATGCGCT GATCAACGAAGCGCA flgM 1891347 - 1891640 + | anti-sigma28 factor FlgM TERM 2160 1891880 - 1891839 - T 100 -17.6 -3.3458 | opp_overlap 1891848, overlap 1891834 1891841 1891848 CAGGAAAGAACCCAA TACAGCAAATAGCGTTGA TATTAG TCAACGCTATTTGCTGTG AAAACGCAGCAACTA TERM 2161 1891878 - 1891841 - T 100 -20.2 -3.22938 | opp_overlap 1891848, overlap 1891839 1891834 1891848 GGAAAGAACCCAATA CAGCAAATAGCGTTGA TATTAG TCAACGCTATTTGCTG TGAAAACGCAGCAAC TERM 2162 1891871 - 1891848 - T 80 -9.7 -3.93664 | opp_overlap 1891848, overlap 1891841 1891839 1891834 ACCCAATACAGCAAA TAGCGTTGA TATTAG TCAACGCTA TTTGCTGTGAAAACG TERM 2163 1891848 - 1891871 + T 83 -10.4 -3.83026 | opp_overlap 1891848 1891841 1891839 1891834 ACCCAATACAGCAAA TAGCGTTGAT ATTA GTCAACGCTA TTTGCTGTGAAAACG TERM 2164 1892057 - 1892088 + T 72 -10.2 -2.77344 | gap 1, opp_overlap 1892060, overlap 1892056 1892061 GATTTCGATCTGAAG ATATCTCCGGCCTGC ACT GCAGGCCGGA-ATGC ATTGTTACACCGTCC TERM 2165 1892086 - 1892060 - T 88 -14.4 -3.08813 | opp_overlap 1892057 1892056 1892061 TTCGATCTGAAGATA TCTCCGGCCTGC ACT GCAGGCCGGAAT GCATTGTTACACCGT TERM 2166 1892061 - 1892085 + T 90 -15.7 -2.6563 | opp_overlap 1892060, overlap 1892057 1892056 TCGATCTGAAGATAT CTCCGGCCTGC ACT GCAGGCCGGAA TGCATTGTTACACCG mviN 1893628 - 1892093 - | putative virulence factor TERM 2167 1893675 - 1893659 - R 100 -13.7 -4.11692 | GACCCACGGGCAAAA CGCCTGC AAG GCAGGCG CTGAAAGAGGCGAAT mviM 1894661 - 1893738 - | putative virulence factor yceH 1895310 - 1894663 - | hypothetical protein rimJ 1895905 - 1895321 - | ribosomal-protein-S5-alanine N-acetyltransferase TERM 2168 1895640 - 1895628 - G 84 -7.7 -4.67556 | opp_overlap 1895628 ACAACATTGGAAAAA TTGGC AAC GCCAA TAATCTCTTTTTCGT TERM 2169 1896058 - 1896028 - R 71 -3.4 -4.8667 | overlap 1896017 1896029 CATATTTGATAAAAA CTCTCTATCAAAGC GAC GTTTTGATAAAAAA ATGGTGATGCTTCCA SDY_2087 1896470 - 1896075 - | iso-IS1 ORF2 TERM 2170 1897410 - 1897426 + G 72 -7.9 -3.92485 | CGACTTTCGCCTGGT CTGCGCC ACA GGGGCAG TTCTATTTGTGCTGT TERM 2171 1898096 - 1898086 - g 74 -8.2 -3.92373 | opp_overlap 1898086 1898086, overlap 1898087 CAGTTTAGCCAGAAA CGCG CCG CGCG TCGTTTGCTGGAACG yceL 1897333 - 1898121 + | hypothetical protein grxB 1898185 - 1898832 + | glutaredoxin 2 TERM 2172 1898835 - 1898881 + F 89 -6.5 -5.31275 | gap 1, overlap 1898843 1898845 AATGGCGATTTAATC CTGACCCGCTGCGGCAGCCTGT ATTC GCAGGTTGCCGCCGTTT-TCAG TTTTTTCTGCTGGCG TERM 2173 1898843 - 1898874 + F 100 -14.4 -4.55016 | overlap 1898835 1898845 TTTAATCCTGACCCG CTGCGGCAGCCTGT ATTC GCAGGTTGCCGCCG TTTTCAGTTTTTTCT TERM 2174 1898845 - 1898872 + F 90 -15.6 -2.56715 | overlap 1898843 1898835 TAATCCTGACCCGCT GCGGCAGCCTGT ATTC GCAGGTTGCCGC CGTTTTCAGTTTTTT yceB 1898966 - 1899526 + | hypothetical protein TERM 2175 1899533 - 1899548 + F 100 -11.8 -4.91852 | opp_overlap 1899530 ATTGATTAATCACGA GGGCGC ATTC GCGCCC TTTATTTTTCGTGCA pyrC 1899632 - 1900678 + | dihydroorotase dinI 1900752 - 1900997 + | DNA damage-inducible protein I TERM 2176 1901019 - 1901034 + T 100 -11.8 -5.85244 | GTGATTTTTGTTTTT GCCGGG TCGC CCCGGC TTTTTTATTTTACTT SDY_2093 1901468 - 1901073 - | iso-IS1 ORF2 SDY_2094 1901663 - 1901890 + | hypothetical protein TERM 2177 1902086 - 1902075 - g 71 -3 -4.8236 | GATGGAAAAAAATAA TGAA GTCA TTCA GACTCATCCGCTCGT bssS 1902061 - 1902315 + | biofilm formation regulatory protein BssS TERM 2178 1902340 - 1902356 + F 76 -9.4 -3.74347 | opp_overlap 1902340, overlap 1902351 ACCATCCACCCAAAA GGCACC TCACC GGTGCC TTTACCATTTCTGGG TERM 2179 1902356 - 1902340 - f 83 -9.4 -4.20084 | opp_overlap 1902340 1902351 ACCATCCACCCAAAA GGCACC TCACC GGTGCC TTTACCATTTCTGGG TERM 2180 1902445 - 1902431 - g 100 -3.6 -5.76633 | GCAGAGAGAAAAAAA TGAAAT ACG ATCTCA TCATTATTGGCAGCG solA 1902430 - 1903548 + | N-methyltryptophan oxidase TERM 2181 1903558 - 1903577 + F 84 -8.6 -4.57837 | gap 1 CAATAATCATCATTA CGGCCTTCA GAA TGA-GGCCG TTTTTACAGGAGTAT TERM 2182 1903637 - 1903647 + G 75 -5.4 -4.62163 | CAATAATATTCGCGA GCAT CTG ATGC TTTATCTTTTTCTCT yceO 1903569 - 1903709 + | hypothetical protein SDY_2098 1904308 - 1903913 - | iso-IS1 ORF2 yeiL 1905392 - 1904733 - | DNA-binding transcriptional activator YeiL TERM 2183 1905290 - 1905276 - G 76 -7.8 -4.18018 | TCGCGTCAGGTAAAA CAGCCA GGA CGGCTG TTGCCCTTCCTGCAC TERM 2184 1905354 - 1905328 - G 71 -2.1 -5.02074 | opp_overlap 1905328, overlap 1905333 TCACGCGCTAAAAAA TGAAACAGCCG CGTAT CGGCTGAAACA TCCGTTAAAAAGCAA TERM 2185 1905349 - 1905333 - G 86 -9.4 -4.42765 | opp_overlap 1905328, overlap 1905328 CGCTAAAAAATGAAA CAGCCG CGTAT CGGCTG AAACATCCGTTAAAA SDY_2100 1905811 - 1905416 - | iso-IS1 ORF2 SDY_2101 1906006 - 1906239 + | hypothetical protein insB 1906707 - 1906498 - | IS1 ORF2 insA 1907195 - 1906920 - | IS1 ORF1 TERM 2186 1907998 - 1907975 - g 90 -11.8 -3.92324 | opp_overlap 1907975 1907972 CCCGCCAATACCAAA GTCGGCATCA CTAT TGATACCGAC TGGTTCTGGGGATTA yeiK 1907237 - 1908052 + | hypothetical protein TERM 2187 1908064 - 1908099 + F 95 -11.8 -3.85698 | opp_overlap 1908066, overlap 1908066 TTAAGTGTTGATAAC AAGCCGGGTCAGTATC GCAA GATGCAGGCCCGGCTA TTTCTGAGGGGCAGA TERM 2188 1908066 - 1908097 + F 95 -14.4 -3.51934 | opp_overlap 1908066, overlap 1908064 AAGTGTTGATAACAA GCCGGGTCAGTATC GCAA GATGCAGGCCCGGC TATTTCTGAGGGGCA TERM 2189 1908097 - 1908066 - f 79 -10 -3.79678 | opp_overlap 1908066 1908064 AAGTGTTGATAACAA GCCGGGTCAGTATC GCAA GATGCAGGCCCGGC TATTTCTGAGGGGCA TERM 2190 1908778 - 1908793 + G 78 -9 -3.9122 | GGCATCGTTAATGGC GATCCC CGGC GGGATC TTGTTTGCCCGCATG TERM 2191 1908948 - 1908968 + G 70 -9.8 -3.23899 | overlap 1908943 GTGTGGCAACAGTGG TGATGGCA TTTGT TGCCATCA TTGCGTTAATTAACG yeiJ 1908152 - 1909402 + | putative transport system permease protein yeiI 1910546 - 1909458 - | hypothetical protein TERM 2192 1910145 - 1910161 + g 82 -9.3 -4.15044 | opp_overlap 1910129 1910143 GCAGCCGGAGACATT CACGCCG GCG CGGCGCG TTTCTTCCAGGAGCA nfo 1911406 - 1910549 - | endonuclease IV yeiH 1912529 - 1911480 - | hypothetical protein TERM 2193 1911560 - 1911578 + g 71 -2.2 -5.00884 | GTACCAGTGCCATCA GCAGAGGT TTC GCCCCGGC TTTTTTCAGCGCGCT yeiE 1912628 - 1913509 + | putative DNA-binding transcriptional regulator TERM 2194 1914286 - 1914321 + G 70 -6.8 -4.08945 | gap 1, opp_overlap 1914297 1914298, overlap 1914298 GCCTGCGGGCTGGAG CAACTGGACAATCGGCG AAG CGCCGTTTG-CTGGTGG TTTTGCGGCGATGAT TERM 2195 1914298 - 1914310 + G 84 -10.5 -3.83705 | opp_overlap 1914297 1914298, overlap 1914286 GAGCAACTGGACAAT CGGCG AAG CGCCG TTTGCTGGTGGTTTT TERM 2196 1914846 - 1914858 + G 72 -6.2 -4.40358 | GGCTGCTGAACACCT CCGG GATGA CCGG TTTTATCGCCTGGCT lysP 1913714 - 1915183 + | lysine transporter TERM 2197 1915205 - 1915224 + T 100 -13.6 -4.75776 | TCCCTTCCTTGCTAA GCCCTCTC AACC GAGAGGGC TTTTTCAATTCCATT TERM 2198 1917481 - 1917466 - T 76 -11.8 -2.56271 | opp_overlap 1917463 1917463, overlap 1917465 TTCTGATGAGAAGAT GCCCGG CGAA CCGGGC GGACTTTCACTTCAG yeiG 1918324 - 1917488 - | putative esterase TERM 2199 1918035 - 1918022 - GT 70 -3.7 -4.70583 | GGCATTAAGATAAAA GCCTG CGCT CTGGC CTAAATCGTAGCCAT TERM 2200 1918043 - 1918063 + gT 72 -5.3 -4.56597 | GCTCTGGCCTAAATC GTAGCCATC GCC GTTGGCAAC TTTTTCGCCGCGCGG SDY_2113 1918536 - 1918252 - | hypothetical protein SDY_2114 1918771 - 1919127 + | iso-IS1 ORF2 SDY_2115 1919627 - 1919220 - | putative bacteriophage protein TERM 2201 1919750 - 1919740 - R 71 -6.8 -4.15222 | overlap 1919741 ACGGCCTTTAACAAA CTCG CGC CGAG AACCGTCGGGAAGCG SDY_2116 1920797 - 1919856 - | putative bacteriophage protein SDY_2117 1921069 - 1920809 - | putative bacteriophage protein SDY_2118 1921315 - 1921070 - | putative bacteriophage protein SDY_2119 1922191 - 1921319 - | putative bacteriophage protein SDY_2120 1922532 - 1922269 - | hypothetical protein SDY_2121 1924252 - 1923170 - | putative bacteriophage protein insB 1924722 - 1924345 - | IS1 ORF2 TERM 2202 1925402 - 1925383 - g 72 -5.6 -4.57569 | GGAGCTGCTTAAAAA GGCGGGGA TCTA TACCCACC TGATAAGCGATCATT SDY_2123 1925132 - 1926613 + | putative sulfatase TERM 2203 1927018 - 1927042 + F 77 -7.2 -4.46757 | TTTTCCATCCCAATG CGTTTGCC TTTCAGGTC GGCAAACG TTTTGTAGGTATCTT SDY_2124 1927443 - 1927691 + | iso-IS1 ORF2 insB 1928079 - 1927702 - | IS1 ORF2 SDY_2126 1928441 - 1928614 + | iso-IS1 ORF2 folE 1928844 - 1929512 + | GTP cyclohydrolase I TERM 2204 1929626 - 1929596 - g 71 -9.1 -3.44848 | gap 1, opp_overlap 1929599 1929599, overlap 1929594 1929599 1929618 TCCTGCTATTAAACA TCAG-CGCCTTTGG GCTA CCAAAGGCGGCTTA TCTTAATCCCGCCTG TERM 2205 1929599 - 1929622 + G 70 -11 -2.82449 | opp_overlap 1929596 1929594 1929599 1929618, overlap 1929599 TGCTATTAAACATCA GCGCCTTTGG GCTA CCAAAGGCGG CTTATCTTAATCCCG TERM 2206 1929622 - 1929599 - g 71 -11 -2.87501 | opp_overlap 1929599 1929599, overlap 1929596 1929594 1929618 TGCTATTAAACATCA GCGCCTTTGG GCTA CCAAAGGCGG CTTATCTTAATCCCG TERM 2207 1929599 - 1929623 + G 84 -10.8 -3.71284 | gap 1, opp_overlap 1929596 1929594 1929599 1929618, overlap 1929599 TGCTATTAAACATCA G-CGCCTTTGG GCTA CCAAAGGCGGC TTATCTTAATCCCGC TERM 2208 1929933 - 1929917 - g 70 -3.6 -4.59773 | CGCCATCGGTAAAAA GCCTGT TTAAT ACCGGC GTCATGCTTTATCTG yeiB 1929529 - 1930455 + | hypothetical protein galS 1930827 - 1931867 + | DNA-binding transcriptional regulator GalS mglB 1932147 - 1933145 + | galactose-binding transport protein TERM 2209 1933154 - 1933176 + T 100 -14.9 -3.88232 | opp_overlap 1933146, overlap 1933150 GAAATAAGACTGATT GGGCGCAGT CTATT ACTGCGCCC TTATTGTATGGCCAA SDY_2131 1933578 - 1933324 - | hypothetical protein SDY_2132 1933756 - 1934151 + | iso-IS1 ORF2 TERM 2210 1934400 - 1934385 - f 79 -7.6 -4.38154 | opp_overlap 1934385 1934384 ATATCTCGCATAAAA TGGAAG AAAT CTTCCA GTTATGTGATGAAGT insB 1935402 - 1935779 + | IS1 ORF2 TERM 2211 1936048 - 1936011 - T 91 -8.5 -4.96848 | opp_overlap 1936015 1936017 TTGTCGACACAAAAA CAACAACGCAAAACGAA ATTC TGCGTCTTGCGTCTTTG CACCTTTAAGATTAG insB 1936530 - 1936153 - | IS1 ORF2 insA 1936850 - 1936575 - | IS1 ORF1 mglC 1936984 - 1937877 + | beta-methylgalactoside transporter inner membrane component TERM 2212 1937895 - 1937945 + T 71 -7 -4.11484 | gap 3, overlap 1937905 TGATTGCGGATATTG CCGGATGCAGCGCATCCGGCAATCG GTGC CAAATGCCGGATGCG-T-C-TCTGG TTTTACAACGTTACC TERM 2213 1937905 - 1937938 + T 93 -15.3 -3.10533 | overlap 1937895 TATTGCCGGATGCAG CGCATCCGGCAATCG GTGC CAAATGCCGGATGCG TCTCTGGTTTTACAA SDY_2138 1938540 - 1938145 - | iso-IS1 ORF2 TERM 2214 1939303 - 1939314 + r 72 -5.8 -4.54821 | opp_overlap 1939303, overlap 1939312 ATTTTCCGTTAACGA TCGG CATA CCGA TTTTCTGATTAAGAT SDY_2140 1941189 - 1940092 - | putative oxidoreductase TERM 2215 1940290 - 1940274 - G 85 -11.5 -3.68827 | CATCGATGATCGAAA CGCCCAG CTC CCGGGCG CTGGCAAACTCTTTT TERM 2216 1940557 - 1940568 + g 77 -7.2 -4.45544 | opp_overlap 1940536, overlap 1940536 GGTGACCAGTACCGC GCGG TTTT CCGC TTTTAGTTGCTCCAG TERM 2217 1940892 - 1940882 - G 85 -6.8 -4.76123 | AAATCAGTAACAAAA CGCT GTA AGCG GCCGATATCAATGGG SDY_2141 1941563 - 1941958 + | iso-IS1 ORF2 SDY_2142 1942396 - 1942157 - | hypothetical protein TERM 2218 1942266 - 1942283 + g 75 -5.5 -4.60924 | opp_overlap 1942268, overlap 1942268 TTTGCTCGCCAGACA TACACCG GTTC CGGTGCA TTTTTAACCCGTTTA sanA 1943118 - 1942399 - | hypothetical protein TERM 2219 1942527 - 1942517 - G 79 -4.6 -5.00884 | opp_overlap 1942517 AGCGGCCCTAAAAAA CGCG GTT CACG TTTAAAAATATAAAG TERM 2220 1943200 - 1943184 - R 89 -10.9 -4.15044 | opp_overlap 1943182 GTTTTGCGCAAGAAA CGGCAAA CTG TTTGCCG GGATTTTCGACACCA cdd 1944152 - 1943268 - | cytidine deaminase TERM 2221 1944272 - 1944262 - R 82 -6.8 -4.82154 | overlap 1944264 AACTTACATCAAAAA TGCG CGA CGCA TCGCAAATTTTAGCC yohK 1944977 - 1944282 - | hypothetical protein yohJ 1945372 - 1944974 - | hypothetical protein TERM 2222 1945316 - 1945297 - G 90 -9.3 -4.4959 | GGGAAGCAATGAAAA TGCCTGC ATACAG GCAGGCA TAAATCAGGACGAAA TERM 2223 1945548 - 1945509 - H 73 -9.5 -3.32993 | gap 2, opp_overlap 1945516, overlap 1945516 1945518 TCAGGCATACATCAA GCATAGAGAGGGATTGCAG TTTG CAGCAATCCCTCT-T-TGC AGACCTTTAATCCGC TERM 2224 1945516 - 1945543 + H 93 -14.2 -3.56594 | opp_overlap 1945516 1945509 1945518 TACATCAAGCATAGA GAGGGATTGCAG TTTG CAGCAATCCCTC TTTGCAGACCTTTAA TERM 2225 1945543 - 1945516 - H 85 -14.2 -3.0281 | opp_overlap 1945516, overlap 1945509 1945518 TACATCAAGCATAGA GAGGGATTGCAG TTTG CAGCAATCCCTC TTTGCAGACCTTTAA TERM 2226 1945541 - 1945518 - H 75 -11 -3.06361 | opp_overlap 1945516, overlap 1945516 1945509 CATCAAGCATAGAGA GGGATTGCAG TTTG CAGCAATCCC TCTTTGCAGACCTTT TERM 2227 1945570 - 1945590 + H 80 -9.7 -3.84633 | opp_overlap 1945572, overlap 1945570 1945572 TTAATCCGCTGACCA TAGGCGCTA ACA TAGCGCCTC ATTTTTTTGCGGGTG TERM 2228 1945570 - 1945591 + H 100 -8.1 -5.42259 | gap 1, opp_overlap 1945572, overlap 1945570 1945572 TTAATCCGCTGACCA T-AGGCGCTA ACA TAGCGCCTCA TTTTTTTGCGGGTGA TERM 2229 1945588 - 1945572 - H 79 -12.3 -2.78715 | opp_overlap 1945570 1945570 1945572 AATCCGCTGACCATA GGCGCTA ACA TAGCGCC TCATTTTTTTGCGGG TERM 2230 1945572 - 1945588 + H 88 -12.3 -3.49966 | opp_overlap 1945572, overlap 1945570 1945570 AATCCGCTGACCATA GGCGCTA ACA TAGCGCC TCATTTTTTTGCGGG yohI 1945818 - 1946393 + | putative regulator protein TERM 2231 1946538 - 1946499 - T 100 -17.2 -2.71364 | CCACTGGCGCAAGGA GCGCGCAGGGGGAGGA CAATCGCC TCCTCCCCCTGCACCC CCGGGCTCTGGCGAA SDY_2148 1947274 - 1946879 - | iso-IS1 ORF2 yohH 1947773 - 1948117 + | hypothetical protein TERM 2232 1948618 - 1948590 - g 72 -6.6 -4.28361 | overlap 1948579 TTAATGCCAGCAAAA CCCGGCAACAGC TCAAT GATGTCGCGGGG GAAATGAAAATTATT TERM 2233 1948810 - 1948825 + G 70 -4.6 -4.46926 | GTTAAGCACTATTGA TGCGGC AAAA GCGGCA TTTTATCCTGACATC yohG 1948211 - 1949131 + | putative channel/filament proteins TERM 2234 1949212 - 1949226 + F 72 -9.2 -3.61398 | opp_overlap 1949196 CCCGCGCTGCGTGAG CGGGCC AAT GGCCTG TTATTGCAAGGGCAG yohF 1949351 - 1950112 + | acetoin dehydrogenase TERM 2235 1950246 - 1950260 + T 80 -5.6 -5.06414 | GGGCAATGGTTTTAC GCCTGA TTA TCCGGC TTTTTCTTCCCGCGC yohD 1950856 - 1950242 - | hypothetical protein yohC 1950966 - 1951577 + | hypothetical protein TERM 2236 1951590 - 1951625 + F 86 -11.2 -3.75015 | overlap 1951591 TAGAAAGTTCTTTGA CGTTGCATTGCTGGCG TAAA TGTCAGCAATGCAGCA TTTCCTCACGATTCT TERM 2237 1951591 - 1951624 + F 87 -14.7 -2.84527 | overlap 1951590 AGAAAGTTCTTTGAC GTTGCATTGCTGGCG TAAA TGTCAGCAATGCAGC ATTTCCTCACGATTC TERM 2238 1952138 - 1952128 - g 81 -8.2 -4.3739 | opp_overlap 1952134, overlap 1952129 GATGTCTTCAGAAAA CCGC GCG GCGG CAAGCCTTGCGCACC TERM 2239 1952655 - 1952639 - g 100 -10.8 -5.8096 | overlap 1952649 TATAAAAAACAAAAA GCCGCC CAAAT GGCGGC GGCGGGGCAGACGGC pbpG 1951742 - 1952683 + | D-alanyl-D-alanine endopeptidase TERM 2240 1952718 - 1952689 - T 90 -14.5 -3.22409 | gap 1, opp_overlap 1952689, overlap 1952684 GAACGATTAAGTGAA TTACGGATGGC-GA TAC TCTGCCATCCGTAA TTTTTACTCCACTTC TERM 2241 1952689 - 1952718 + T 100 -14.5 -4.74801 | gap 1, opp_overlap 1952689 1952684 GAACGATTAAGTGAA TTACGGATGGC-GA TAC TCTGCCATCCGTAA TTTTTACTCCACTTC dld 1954437 - 1952722 - | D-lactate dehydrogenase TERM 2242 1953441 - 1953425 - G 70 -3.6 -4.61162 | opp_overlap 1953421 1953425 AGATTAAAGAAGAAA GGCATC TTGTC GGTGCC TAACTTATCAATCAT TERM 2243 1953704 - 1953691 - G 70 -6.7 -4.01703 | opp_overlap 1953690, overlap 1953695 AGAAGATTCAAATAA CCGAT CCGG ATCGG CGTTATAACGTGCGG TERM 2244 1955882 - 1955860 - g 76 -4 -5.02074 | overlap 1955861 1955864 TTACCGCTGAAAAAA TCAGCCACCA TTG CGGTGGTTGG GCCACTGGCGGACAG TERM 2245 1956782 - 1956764 - g 75 -6.6 -4.37658 | AAGGCTTTGAGAAAA TCACCCTG AAA CCGGGCGA AACTCAGACTGTTAG bglX 1954633 - 1956930 + | beta-D-glucoside glucohydrolase, periplasmic TERM 2246 1956942 - 1956960 + F 76 -8.8 -3.71607 | opp_overlap 1956942 GTAATGCTTTAGTAA GGGCGTGA CAT TTGCGCCC TTTGCCTGATGTTCA TERM 2247 1957048 - 1957018 - f 73 -9.7 -3.30124 | gap 1 TTGTAGGCCGGATAA GGCGC-TCGTGCCG CATC CGGCAGGAAACGCC GGACCGAATATGCCT TERM 2248 1958022 - 1958005 - g 70 -3.5 -4.65895 | gap 1, overlap 1958016 GCCTCGATGCAAAAA CATTGCAG CAA CTG-AATG CCAGCATTGCAGTGG yehZ 1957182 - 1958099 + | putative transport system permease protein TERM 2249 1958131 - 1958177 + F 74 -8.6 -3.89346 | overlap 1958132 TACGTATTAATCCTG TTCTGGCGCTGCTGCTGTTGCT GAC GGCAATCGCAGCAGCGCTGCCG TTTATCAGCTACGCG TERM 2250 1958279 - 1958293 + F 74 -5.6 -4.64676 | overlap 1958281 1958287 GGGCTTTGGTTGCGC CTGGCT GAC AGCCTG TTTTATTCCCGCTAA yehW 1960183 - 1960914 + | putative transport system permease protein SDY_2161 1961002 - 1960895 - | hypothetical protein yehV 1961793 - 1961062 - | putative transcriptional regulator yehU 1962015 - 1963700 + | putative 2-component sensor protein yehT 1963682 - 1964416 + | putative two-component response-regulatory protein YehT yehS 1964463 - 1964933 + | hypothetical protein yehR 1965448 - 1964975 - | hypothetical protein TERM 2251 1965317 - 1965343 + g 76 -8 -4.29073 | ATAGGTAATGGCAAT TTCAGTGCCGTT CAG ATTGGCGCTGAA TTTCTTCGATTCTTC TERM 2252 1965482 - 1965466 - R 79 -10.9 -3.46081 | opp_overlap 1965462 TATTTAATCAAGGAA CTGGTGA CTC TCACCAG GGGCTATATAGGATA SDY_2167 1966532 - 1965561 - | hypothetical protein TERM 2253 1965701 - 1965688 - G 75 -4.5 -4.85599 | opp_overlap 1965692, overlap 1965692 GCCAGCCGATAAAAA CCCAC CGCG GTGAG GTCATTCGCCAGCAA TERM 2254 1965955 - 1965943 - G 75 -5.5 -4.71426 | TGCCCATCAACAAAA CTGAC AAA GCCAG AAACCAGACACACGG SDY_2168 1967465 - 1966560 - | insertion element IS2 transposase InsD SDY_2169 1967788 - 1967423 - | insertion sequence 2 OrfA protein SDY_2170 1968921 - 1967830 - | hypothetical protein TERM 2255 1968849 - 1968830 - GR 70 -4.2 -4.63218 | opp_overlap 1968840 1968841 1968844, overlap 1968831 CTGCGCTTAACAAAA CCGGCATT GCTT AACGCCGT CAGTGCCTGCGGTGT SDY_2171 1969352 - 1968894 - | hypothetical protein yehP 1970029 - 1969337 - | hypothetical protein SDY_2173 1971080 - 1970022 - | hypothetical protein SDY_2174 1972318 - 1971092 - | hypothetical protein SDY_2175 1972540 - 1972935 + | iso-IS1 ORF2 SDY_2176 1974807 - 1973200 - | hypothetical protein TERM 2256 1973699 - 1973719 + g 79 -3.9 -5.10767 | CAGTATTCATCGCGT GCTTTTTGC TGG GCAGGCAGC TTTTTGTCTTCGATG molR_D 1976175 - 1974817 - | putative regulator TERM 2257 1975117 - 1975134 + g 70 -5.5 -4.42386 | overlap 1975119 ATTCGCCAGCCCCAT TACCCGA CCGC TCGGGCA TTTTCTGCCTGCCCA TERM 2258 1975599 - 1975613 + g 74 -2.1 -5.04868 | CAGCATCGTTCGCCT GTGAT TCATC ATCGC TTTTGTTTGGTTTGG SDY_2178 1976651 - 1976253 - | iso-IS1 ORF2 SDY_2179 1977411 - 1976986 - | hypothetical protein SDY_2180 1978459 - 1977371 - | hypothetical protein TERM 2259 1977418 - 1977405 - G 71 -9.5 -3.50326 | opp_overlap 1977414, overlap 1977414 AGCAAAGTAGCATAA GCGGC AAGA GCCGC AGCGGGATGTTTTTG TERM 2260 1978801 - 1978782 - R 100 -10.7 -5.01553 | AATTTATAAAGAAAA GGCGCTG TCGATG CAGCGCC TTGAAGGGGGATTAT metG 1980846 - 1978813 - | methionyl-tRNA synthetase TERM 2261 1979805 - 1979817 + g 76 -9.1 -3.73775 | opp_overlap 1979801 CGTCAAAATGATTCA GCCAG GTG CTGGC TTTAATAAAGGTACC TERM 2262 1980434 - 1980447 + g 70 -3.8 -4.60487 | opp_overlap 1980429 TTCACAAAACGGTCC GGCA GGAACA TGCC TTTTTCCGGATCGTA TERM 2263 1980479 - 1980496 + g 93 -8.5 -4.86731 | AGCTGAGAGATGGTG CGGTTTT TAAT AAAACCG TTTTCTTTCAGGCGA mrp 1980978 - 1982087 + | putative ATPase TERM 2264 1982117 - 1982149 + F 100 -9.9 -4.85782 | opp_overlap 1982121, overlap 1982130 TCTGGTTATTCTTCA TACACCGCAGAGATG TTA CATTGATGCGGTGTA TTTGTTTTTGCCGCA yehE 1982350 - 1982613 + | hypothetical protein SDY_2184 1982665 - 1982967 + | IS600 ORF1 SDY_2185 1983108 - 1983923 + | IS600 ORF2 baeR 1985060 - 1984338 - | DNA-binding transcriptional regulator BaeR TERM 2265 1984428 - 1984440 + g 78 -5.5 -4.81551 | overlap 1984409 GTCGAGAGATTCCAG CTTGC GGC GCAGG TTTTTAATGTGGCTG TERM 2266 1984626 - 1984615 - G 70 -5.8 -4.15106 | CATGAAGCCTGAAAA CGAC CTTC GTCG ATAATCAATGGGCTT TERM 2267 1984777 - 1984789 + g 71 -3.4 -4.8048 | AGCCCCAGCAGGCGG TCGA TCTCT TCGA TTTTTGCTGTCACCA baeS 1986460 - 1985057 - | signal transduction histidine-protein kinase BaeS TERM 2268 1986175 - 1986143 - GR 77 -10.6 -3.39862 | gap 1, opp_overlap 1986138 1986171, overlap 1986133 ATCAACCACCCAGAA CTGGGTACGCCAGCC GTGC GG-TGGCATACCCGG GCCGGGTTTATCTTC TERM 2269 1986171 - 1986181 + gr 79 -8.2 -4.20025 | opp_overlap 1986143, overlap 1986138 CCGTGCGGTGGCATA CCCG GGC CGGG TTTATCTTCCGAATT yegB 1987400 - 1986354 - | putative transport protein TERM 2270 1987424 - 1987374 - GR 90 -8.1 -4.73388 | AATGTTGATCAAAAA GATCCAGTGCCAGGAGGCGTACT CCACC AGCAGGCCGCCGAGCGCCGGACC GACCTGACCAGGTAA SDY_2189 1988663 - 1987467 - | ISSfl2 ORF TERM 2271 1988500 - 1988525 + g 71 -3.3 -4.74518 | gap 1, opp_overlap 1988480, overlap 1988486 1988501 ATCTGACCATGTTGT TTCAGGTCAGAT ATT AGC-GACCTGAG TTTGTTTTCGTCGTT TERM 2272 1989287 - 1989277 - g 72 -5.4 -4.56597 | CGCTGGCTTTAAAAA GAGT GGA ACTC GGCATTGTGACGTTC SDY_2190 1989099 - 1989758 + | hypothetical protein TERM 2273 1989743 - 1989770 + F 74 -8.4 -3.92373 | overlap 1989746 GGAAGCGCCAAAAGG CTGGACGTCAGT GTGA GCTGGCGTCTGG TTTATGCATCCGCTG TERM 2274 1990019 - 1990040 + G 72 -5.2 -4.56597 | gap 1, overlap 1990020 CTCGCCACGGATATT GT-GCTGAC CATTC GTCAGCGAC TTTTTGCCGAGGCGG TERM 2275 1990250 - 1990266 + G 71 -9.5 -3.53444 | ACCGATGAAGATGCC GTTTCCA GAC TGGAAAC TTTCGCCAGCACTGA SDY_2191 1989755 - 1990516 + | hypothetical protein TERM 2276 1991825 - 1991815 - g 78 -5.4 -4.77567 | AGTCTGACAAGAAAA GCTT ATA AAGC AGAAATCCAGCAACG TERM 2277 1992458 - 1992418 - g 71 -3.2 -4.83615 | gap 1, opp_overlap 1992419, overlap 1992419 CAGGCGGCAGAAAAA CTGGCTCAGGCGCAGGC AGATTTAA GCC-GCTGCTGAGCCAT TTTCTTTTAACGAAA TERM 2278 1992419 - 1992457 + G 90 -6.7 -5.07652 | gap 1, opp_overlap 1992418 1992419 AGGCGGCAGAAAAAC TGGCTCAGGCGCAGGC AGATTTAA GCC-GCTGCTGAGCCA TTTTCTTTTAACGAA SDY_2192 1990513 - 1992453 + | putative chaperonin yegD 1993817 - 1992465 - | putative chaperone TERM 2279 1992976 - 1992989 + g 73 -3.8 -4.81249 | CACCACGGCAGAATC GGCA GGGCGA TGCC TTTTTCGGTTTCGCC TERM 2280 1993713 - 1993731 + g 72 -5.2 -4.4874 | opp_overlap 1993714, overlap 1993714 CGCGCAAAGCATTGA AGGCAGCA GCG TGCTGTCG TTTTCCATTTTTAGC alkA 1993951 - 1994799 + | 3-methyl-adenine DNA glycosylase II TERM 2281 1997660 - 1997646 - f 93 -10 -4.67353 | GCAGCGACTCAAAAA GCAACC GTG GGTTGC GATGGCGCAGCAGAT TERM 2282 1998068 - 1998049 - f 70 -5 -4.38712 | gap 1, overlap 1998051 GGCATGGCGATAAAA CG-CCACCA TCA TGATGGACG TCGGGAACCACAGTG TERM 2283 1999134 - 1999124 - g 70 -4.6 -4.56597 | opp_overlap 1999102 1999100 GCGCGGCGGGAAAAA CCGC ATC GCGA TCGATATATTGAAAG udk 1998534 - 1999175 + | uridine kinase dcd 1999267 - 1999848 + | deoxycytidine triphosphate deaminase TERM 2284 2000049 - 2000008 - g 74 -10.8 -3.14931 | opp_overlap 2000008 2000007 CGTAGCGGTTATCAA TTGCAGCTCGACGGGCCA CTGCGT TGGCACGTCTGGCCGCAA CTTAGTATCCTCTCC TERM 2285 2000736 - 2000707 - g 88 -10.7 -4.128 | overlap 2000688 ACGCTGACAGAGAAA CCGGAATGGCAGC TGAG GCTGCAATTCCCG CAACTGAATCTTGAC TERM 2286 2001091 - 2001072 - g 74 -8.6 -3.8709 | overlap 2001061 2001073 AAATCCGCGGATAAA CTTCCAGC CACG GCTGGAAA ACGTTGAGATTGGCA asmA 1999870 - 2001723 + | putative assembly protein TERM 2287 2001733 - 2001766 + T 95 -11.8 -3.87815 | opp_overlap 2001733, overlap 2001735 ATGTAAAACAAGTTA TGCAGATGGCGGCG TCAATT TGTCGCCATCTGTA TTTATAGCACTAAGC TERM 2288 2001735 - 2001764 + T 88 -12.2 -3.52906 | opp_overlap 2001733, overlap 2001733 GTAAAACAAGTTATG CAGATGGCGGCG TCAATT TGTCGCCATCTG TATTTATAGCACTAA SDY_2199 2002066 - 2001776 - | hypothetical protein SDY_2200 2002277 - 2002056 - | hypothetical protein yegH 2004237 - 2002615 - | putative transport protein TERM 2289 2002782 - 2002794 + g 70 -4.1 -4.72272 | overlap 2002783 ACAGCCCGGCAATGG TGTGA TAT TCACG TTTTTCATCCAGCGG TERM 2290 2003424 - 2003468 + g 75 -11.3 -2.90075 | opp_overlap 2003433, overlap 2003460 CATCTTCTTTTTGCC CGCTAAGCAGGCGCATTACCG CTT CGGTAGTCCGCTGGCGCAGCG TCTGGTTAGCGGAAA SDY_2202 2004903 - 2005298 + | iso-IS1 ORF2 galF 2005517 - 2006410 + | UTP--glucose-1-phosphate uridylyltransferase subunit GalF TERM 2291 2006450 - 2006505 + F 93 -10.7 -4.52857 | gap 1, opp_overlap 2006465 TTGATAAGAAAATTA TAACGGCAGTGAAGATTCGTGGCGAA AGTAA TTTGTTGCGAATATTC-CTGCCGTTG TTTTATATAAACAAT rfbB 2006782 - 2007867 + | dTDP-glucose 4,6 dehydratase rfbD 2007867 - 2008766 + | dTDP-4-dehydrorhamnose reductase rfbA 2008824 - 2009702 + | glucose-1-phosphate thymidylyltransferase TERM 2292 2009742 - 2009756 + G 75 -5 -4.77036 | opp_overlap 2009742 2009743, overlap 2009743 TTCCAGATGTATTAA TTTTCG AGC CGAAAG TTTTTGGTGATGAAC TERM 2293 2010148 - 2010138 - g 79 -4 -5.03145 | CAAGTTTTGAAAAAA GTAT TTC ATAC TCAGATCCTACCATT rfbC 2009705 - 2010262 + | dTDP-4-dehydrorhamnose 3,5-epimerase rfbX 2010259 - 2011449 + | putative O-antigen transporter rfc 2011446 - 2012588 + | O-antigen polymerase rfbR 2012581 - 2013429 + | rhamnosyl transferase II rfbQ 2013454 - 2014365 + | rhamnosyl transferase I TERM 2294 2015161 - 2015178 + F 83 -9.1 -4.31688 | CGATATTATTTGCCA GCCATCC AATT GGGTGGC TTTTGGCTTAGTATT TERM 2295 2016814 - 2016851 + G 72 -6.4 -4.42386 | gap 2, opp_overlap 2016839, overlap 2016812 CCGGTTCCGACCTTC GCTGCTGCGGTTGCCTAT TACG ATAG-CTACCGT-GCAGC TTTTCTGCCTGCGAA gnd 2015551 - 2016957 + | 6-phosphogluconate dehydrogenase TERM 2296 2016985 - 2017007 + F 100 -11.2 -5.75945 | opp_overlap 2016984 AACAATAAAATTGAG GCCCGGCGTA TAT TGCACCGGGC TTTTTTTTGGCCAAT TERM 2297 2017555 - 2017571 + G 77 -8.7 -4.07687 | opp_overlap 2017555 2017556, overlap 2017556 GTTATGGTCATCAAA TCAACGG TTC CCGTTGG TTTTACCGAAGCGAT ugd 2017207 - 2018373 + | UDP-glucose 6-dehydrogenase TERM 2298 2018384 - 2018404 + F 100 -15.5 -3.83921 | opp_overlap 2018374, overlap 2018374 ACTAACATCCTGTTA TCAGGGCGA TTT TCGCCCTGA TTCTCTTATGTTCCC TERM 2299 2018695 - 2018684 - g 81 -5.8 -4.86731 | opp_overlap 2018684 CGTTGCCAAAGAAAA GTGG ACTT CCAC TGCTATCGTTACTCA wzzB 2018463 - 2019497 + | regulator of length of O-antigen component of lipopolysaccharide chains TERM 2300 2019549 - 2019514 - T 72 -9 -3.53012 | opp_overlap 2019519 2019520, overlap 2019519 2019520 CTTTTCGTTTTTAAA GAAAATGGGCAGGGTG CTGA CACCTTGCCCGTTTTT TTTGCCGGATGCGAC TERM 2301 2019544 - 2019519 - T 93 -8.9 -4.86731 | opp_overlap 2019519 2019520, overlap 2019514 2019520 CGTTTTTAAAGAAAA TGGGCAGGGTG CTGA CACCTTGCCCG TTTTTTTTGCCGGAT TERM 2302 2019519 - 2019544 + T 100 -13.3 -5.75945 | opp_overlap 2019514 2019519 2019520, overlap 2019520 CGTTTTTAAAGAAAA TGGGCAGGGTG CTGA CACCTTGCCCG TTTTTTTTGCCGGAT TERM 2303 2019520 - 2019543 + T 100 -14.6 -4.04482 | opp_overlap 2019519 2019514 2019520, overlap 2019519 GTTTTTAAAGAAAAT GGGCAGGGTG CTGA CACCTTGCCC GTTTTTTTTGCCGGA TERM 2304 2019543 - 2019520 - T 88 -12.4 -3.51557 | opp_overlap 2019520 2019519, overlap 2019519 2019514 GTTTTTAAAGAAAAT GGGCAGGGTG CTGA CACCTTGCCC GTTTTTTTTGCCGGA hisI 2020205 - 2019594 - | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein hisF 2020975 - 2020199 - | imidazole glycerol phosphate synthase subunit HisF hisA 2021694 - 2020957 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisH 2022284 - 2021694 - | imidazole glycerol phosphate synthase subunit HisH hisB 2023351 - 2022284 - | imidazole glycerol-phosphate dehydratase/histidinol phosphatase TERM 2305 2022600 - 2022587 - G 70 -5.9 -4.28487 | opp_overlap 2022587, overlap 2022582 CAGCACAAAACCAAA GCGGC AAAT ACCGC GTTTGTCGCCAAGAG hisC 2024421 - 2023351 - | histidinol-phosphate aminotransferase TERM 2306 2023562 - 2023548 - G 81 -7.1 -4.70659 | opp_overlap 2023547 2023552 TTTCAGAGTCAAAAA CCTGC TCCAC GCAGG AGATTTCTTTCAGTG hisD 2025722 - 2024418 - | histidinol dehydrogenase hisG 2026627 - 2025728 - | ATP phosphoribosyltransferase TERM 2307 2026682 - 2026708 + H 100 -20.2 -3.99405 | opp_overlap 2026682 CCGCGCAATAAAAAA GCCCCCGGAAGG TGA TCTTCCGGGGGC TTTCTCATGCGTTCA TERM 2308 2026708 - 2026682 - H 100 -19.5 -5.4505 | opp_overlap 2026682 CCGCGCAATAAAAAA GCCCCCGGAAG GTGAT CTTCCGGGGGC TTTCTCATGCGTTCA SDY_2223 2027230 - 2028054 + | putative enzyme of sugar metabolism yeeY 2028100 - 2028642 + | putative transcriptional regulator LYSR-type SDY_2225 2028694 - 2029029 + | hypothetical protein TERM 2309 2029115 - 2029141 + F 87 -7.3 -5.26875 | opp_overlap 2029118, overlap 2029118 TCAAAAAATGACTAA AAACCGACGTT TCATC AGCGTCGGTTA TTTTTTGCTTCAAAC TERM 2310 2029138 - 2029118 - f 82 -6.8 -4.88129 | opp_overlap 2029118 2029115 AAAAATGACTAAAAA CCGACGTT TCATC AGCGTCGG TTATTTTTTGCTTCA TERM 2311 2029118 - 2029138 + F 89 -9 -4.72473 | opp_overlap 2029118, overlap 2029115 AAAAATGACTAAAAA CCGACGTT TCATC AGCGTCGG TTATTTTTTGCTTCA yeeF 2029290 - 2030654 + | putative amino acid/amine transport protein TERM 2312 2030675 - 2030702 + T 100 -12.8 -6.04419 | opp_overlap 2030675 TTTTCTAATAATAAA CCGGAGTCGAAT GAAC ATTTGGCTCCGG TTTTTTTATTCTTTT TERM 2313 2030702 - 2030675 - T 81 -8.4 -4.44667 | opp_overlap 2030675 TTTTCTAATAATAAA CCGGAGTCGAAT GAAC ATTTGGCTCCGG TTTTTTTATTCTTTT SDY_2228 2032079 - 2031174 - | insertion element IS2 transposase InsD SDY_2229 2032402 - 2032037 - | insertion sequence 2 OrfA protein yeeD 2033229 - 2033456 + | hypothetical protein sbcB 2034926 - 2033499 - | exonuclease I SDY_2232 2035572 - 2035177 - | iso-IS1 ORF2 TERM 2314 2035918 - 2035936 + H 70 -5.2 -4.50686 | opp_overlap 2035918 AGATTCAACTAATTA GAGGCATC ACC GCTGCTTC TTTGTTCGTTTTTAA TERM 2315 2035973 - 2035984 + G 72 -4.4 -4.62069 | overlap 2035963 GTCTGGTTTTGCGGC GGAA AACA TTCC TTTTTCACCTCAGCC TERM 2316 2036784 - 2036750 - g 100 -10.8 -4.63218 | overlap 2036751 TTGGGGGCAACAAAA CTTTACTACGGTGCAA ATT TTGCACCGTGGGAAAA AGGTCGGTACGGAAC TERM 2317 2036783 - 2036751 - g 83 -12.1 -3.3761 | overlap 2036750 TGGGGGCAACAAAAC TTTACTACGGTGCAA ATT TTGCACCGTGGGAAA AAGGTCGGTACGGAA dacD 2035938 - 2037074 + | D-alanyl-D-alanine carboxypeptidase SDY_2235 2037890 - 2038285 + | iso-IS1 ORF2 yeeA 2038639 - 2039697 + | hypothetical protein TERM 2318 2039890 - 2039907 + G 70 -5.6 -4.329 | ACTACCAAGCCTTCA TTCCAG GACGTA CTGGAA TTTGTTCGTCTGTTC yeeX 2039803 - 2040198 + | hypothetical protein TERM 2319 2040212 - 2040240 + T 100 -16.1 -3.52762 | opp_overlap 2040215, overlap 2040215 AATTCCTGTTTTATT CAATGAGGGGTGC CTG GCAACCCTCATTG TTCATTGATTCTTTT TERM 2320 2040215 - 2040237 + T 95 -12 -3.86634 | opp_overlap 2040215, overlap 2040212 TCCTGTTTTATTCAA TGAGGGGTGC CTG GCAACCCTCA TTGTTCATTGATTCT TERM 2321 2040237 - 2040215 - T 78 -12 -3.05384 | opp_overlap 2040215 2040212 TCCTGTTTTATTCAA TGAGGGGTGC CTG GCAACCCTCA TTGTTCATTGATTCT SDY_2238 2040822 - 2040427 - | iso-IS1 ORF2 SDY_2239 2041017 - 2041358 + | hypothetical protein cobU 2041772 - 2042317 + | adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase cobS 2042314 - 2043057 + | cobalamin synthase cobT 2043069 - 2044148 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase erfK 2044213 - 2045145 + | hypothetical protein TERM 2322 2045195 - 2045166 - f 80 -12.3 -3.02946 | opp_overlap 2045172, overlap 2045172 TTGGTAATTAGAAAG CAAAAAGCCTGCT AGAA AGCAGGCTTTTTT GAATTTGGCTCCTCT TERM 2323 2045189 - 2045172 - f 100 -11.3 -5.05505 | opp_overlap 2045172, overlap 2045166 ATTAGAAAGCAAAAA GCCTGCT AGAA AGCAGGC TTTTTTGAATTTGGC TERM 2324 2045172 - 2045189 + F 100 -11.3 -5.22039 | opp_overlap 2045166 2045172 ATTAGAAAGCAAAAA GCCTGCT AGAA AGCAGGC TTTTTTGAATTTGGC TERM 2325 2045547 - 2045530 - f 81 -4.9 -5.10163 | gap 1, opp_overlap 2045530 AACGCCAAAATAAAA CTGGCAAG CAT CTTGC-AG TCTGGTTGTAAGTAA TERM 2326 2046048 - 2046010 - g 78 -5.4 -4.8622 | GTGCTTAACGAAAAA CTGATAAATCACCAAC TCGATAT GGCGGTGATTTATGAG CATTCCCCTGTGGCT nac 2045602 - 2046519 + | nitrogen assimilation transcriptional regulator cbl 2046621 - 2047571 + | transcriptional regulator Cbl TERM 2327 2047579 - 2047595 + F 74 -5.8 -4.60924 | opp_overlap 2047569 2047567 2047579 2047580, overlap 2047580 AGATATAGCAAAAAG TCCGCT ATAAA AGCGGG TTTTTCAGAAATTTG TERM 2328 2048103 - 2048113 + G 85 -3.2 -5.42862 | GACAGCTTCAATATG GTCA TTA TGGC TTTTTTTGCAGCTAT TERM 2329 2048439 - 2048419 - g 72 -6.2 -4.43681 | CAGGGAATACGAAAA TACCGCTA CTGAT TAACGGTA GCCTGAATATTCTTA SDY_2248 2048019 - 2048519 + | hypothetical protein SDY_2249 2048510 - 2049358 + | hypothetical protein TERM 2330 2049553 - 2049539 - f 79 -4.4 -5.19916 | AAAACAGTTAAAAAA TAAAAA TTA TTTTTA CCCGGTTACCGGTGA insA 2049619 - 2049894 + | IS1 ORF1 insB 2049939 - 2050316 + | IS1 ORF2 amn 2051806 - 2050352 - | AMP nucleosidase TERM 2331 2050493 - 2050479 - G 73 -4.2 -4.82901 | GCGCCTTCATAAAAA CGGTTA GCC TGACCG GGAAGTTTAATCTCG TERM 2332 2051028 - 2051016 - G 72 -7.7 -3.90112 | opp_overlap 2051014 2051012 2051011 2051016 TCGGCGGTAATTAAA TGCCA TGC TGGCA TCTGGTGTTTTTTCC TERM 2333 2051286 - 2051268 - G 84 -7.4 -4.65895 | overlap 2051270 CGTGCGAGGGAAAAA TCGACGCG GCG CGCATCAA AATGCGATAGCGGGG TERM 2334 2051907 - 2051872 - R 73 -4.6 -4.90525 | opp_overlap 2051903, overlap 2051873 2051874 GAATGTGAAACAAAA GTGTAAGGCGAAGATC GGAT GATCTTCGCCAGACTA TCAAGCGCGTTGATT TERM 2335 2051905 - 2051874 - R 76 -11.6 -2.70854 | opp_overlap 2051903, overlap 2051873 2051872 ATGTGAAACAAAAGT GTAAGGCGAAGATC GGAT GATCTTCGCCAGAC TATCAAGCGCGTTGA shiA 2053224 - 2051908 - | shikimate transporter TERM 2336 2052740 - 2052754 + g 74 -2.2 -5.16237 | TGTACACCGCTACTG TAAAAG GCT TTTTTA TTTTTTGGTGCACTT SDY_2255 2053901 - 2053686 - | iso-IS1 ORF2 SDY_2256 2054080 - 2053898 - | iso-IS1 ORF2 SDY_2257 2054303 - 2054554 + | hypothetical protein SDY_2258 2054574 - 2054852 + | putative plasmid stabilization protein TERM 2337 2055701 - 2055687 - g 73 -9.2 -3.69395 | overlap 2055684 TTTATGATCGAAGAA GCCCAG CGT CCGGGC GAGTATATGACCGCG TERM 2338 2056185 - 2056175 - g 78 -8.2 -4.24948 | TGAGCACATGGAAAA CGCC AAA GGCG AAGCTATGCCGGTAG yegQ 2054955 - 2056316 + | hypothetical protein TERM 2339 2056450 - 2056481 + T 100 -8.1 -5.28176 | overlap 2056453 CTAGGAACCACCTCC TTAGCCTGTGTAA TCTCCC TTACACGGGCTTA TTTTTTATGCATAAG TERM 2340 2056453 - 2056478 + T 93 -9.8 -4.73105 | overlap 2056450 GGAACCACCTCCTTA GCCTGTGTAA TCTCCC TTACACGGGC TTATTTTTTATGCAT SDY_2260 2056978 - 2056646 - | hypothetical protein TERM 2341 2057859 - 2057845 - g 71 -2.7 -4.77757 | opp_overlap 2057849 CCGGAAAAATTAAAA GCCGC GCTGG GTGGC GTCTCTTACATCATT SDY_2261 2057377 - 2058276 + | lipid kinase TERM 2342 2058351 - 2058307 - T 86 -13 -3.39595 | gap 1, opp_overlap 2058324 TTGAACCAGGGAGAA TCCGTAATGCCGGATGCGGTG TAAA CACCTTATCCGGCA-TACAGA ACAATACTACACCGT gatR 2059137 - 2058358 - | galactitol utilization operon repressor TERM 2343 2058980 - 2058993 + g 74 -2.3 -5.06414 | opp_overlap 2058979, overlap 2058981 GCACCACCATGAAAG CGCGT AACC ACGCC TTTTTGTTCGAGAAA TERM 2344 2059207 - 2059234 + r 72 -9.1 -3.54424 | gap 1, opp_overlap 2059206 2059208 2059209, overlap 2059208 TCTGTTTTGCACAAT AC-CGGGCCAGC ATCAC GCTGGCCCGCGG TTTCAGGGAATGAGC TERM 2345 2059208 - 2059233 + r 78 -12.6 -2.72511 | gap 1, opp_overlap 2059208 2059206 2059209, overlap 2059207 CTGTTTTGCACAATA C-CGGGCCAGC ATCAC GCTGGCCCGCG GTTTCAGGGAATGAG TERM 2346 2059232 - 2059208 - R 83 -13.5 -3.21276 | opp_overlap 2059207 2059208, overlap 2059206 2059209 CTGTTTTGCACAATA CCGGGCCAGCA TCA CGCTGGCCCGC GGTTTCAGGGAATGA TERM 2347 2059231 - 2059209 - R 95 -17 -2.52623 | opp_overlap 2059208 2059207, overlap 2059208 2059206 TGTTTTGCACAATAC CGGGCCAGCA TCA CGCTGGCCCG CGGTTTCAGGGAATG gatD 2060277 - 2059237 - | galactitol-1-phosphate dehydrogenase TERM 2348 2059387 - 2059411 + g 70 -9.9 -3.15544 | overlap 2059384 CGCCGTTTCCCACTC CTGCCCCGGCC AAG GGCTGGAGTAG TTCATCCAACTGCCG gatB 2061969 - 2061709 - | galactitol-specific PTS system component IIB SDY_2267 2062981 - 2062586 - | iso-IS1 ORF2 gatY 2065217 - 2064363 - | tagatose-bisphosphate aldolase TERM 2349 2064668 - 2064649 - G 71 -3.4 -4.85599 | overlap 2064653 2064654 TCCAGTCGAGAAAAA TCAAGCGC CGGT GCGCTGGC ATACATCCCATGAGC TERM 2350 2065362 - 2065341 - R 100 -13.7 -5.58209 | TGAAAGGCAAAAAAA CGGCCTCCC GATA GGGAAGCCG TAGCAAAGTGCGCGT SDY_2270 2066499 - 2065447 - | fructose-bisphosphate aldolase TERM 2351 2066600 - 2066612 + H 76 -4.1 -5.08011 | overlap 2066598 ACGGGCGAGTTTTTC CATCT TTT GGATG TTTTTTCAGCGTTTT TERM 2352 2066779 - 2066763 - g 85 -8.7 -4.56729 | opp_overlap 2066763 2066766 ATTAAAAGATGAAAA CAACAGC AAA GCTGTCG TTCATGATGTTTGTT TERM 2353 2067502 - 2067484 - g 72 -4.5 -4.7254 | opp_overlap 2067493, overlap 2067470 AGTTGGCATGAAAAA CGCCACC GGCTG GATGACG CTCGGCCAGTTCTCT TERM 2354 2067534 - 2067544 + G 72 -4.6 -4.65895 | overlap 2067543 AAATCTTCTTTATGC TGGC ATT GCCG TTTTTCACTAAACGC TERM 2355 2067773 - 2067740 - g 87 -4.5 -5.252 | overlap 2067742 TATGTCGATAAAAAA GCCCCCGTGCA TATGCGTACCGC TGCGCAGGGGC TGATCACGCTCTGCT TERM 2356 2067909 - 2067938 + G 77 -11.5 -3.21981 | overlap 2067907 GGATGTGGACTTTTG GCGCGGTGATGAT TGCC ATTATCGCCGTGC TGTTCATGATCTTTT yegT 2066756 - 2068033 + | putative nucleoside permease protein SDY_2272 2068030 - 2069034 + | hypothetical protein TERM 2357 2069098 - 2069128 + G 80 -11.9 -3.33162 | gap 1, overlap 2069089 CGGTGATGGTCGTCG GCG-CGGCGGTCAT TGAT GTGATCGCCGACGC TTATGCCCTCCCCTG SDY_2273 2069031 - 2069996 + | putative kinase yegW 2070716 - 2069970 - | putative transcriptional regulator TERM 2358 2070031 - 2070079 + g 93 -11 -4.39568 | opp_overlap 2070031, overlap 2070033 ATGCTGTATTCAATA GGCCGTTGCTGTTGGTCAAGCG CCACT TGCTTGATCACCAGCACCGGTA TTTTGCTATCTAACT TERM 2359 2070033 - 2070077 + g 100 -15.8 -3.79993 | opp_overlap 2070031, overlap 2070031 GCTGTATTCAATAGG CCGTTGCTGTTGGTCAAGCG CCACT TGCTTGATCACCAGCACCGG TATTTTGCTATCTAA TERM 2360 2070584 - 2070615 + g 83 -5.1 -5.12707 | gap 1, opp_overlap 2070584 2070583 CACCGGGCAAAATAT TGCCATGCTCCAGC ACCCC GCTGC-GCACGGCA TTTTTTACCGTTTCG TERM 2361 2070665 - 2070647 - G 78 -8.8 -4.25401 | CAAACTTAATATAAA GCGGCG TGTTATC CGCCGC TAAAATACGCTCGTT yegX 2071265 - 2070768 - | hypothetical protein SDY_2276 2071586 - 2071278 - | hypothetical protein thiD 2072451 - 2071651 - | phosphomethylpyrimidine kinase TERM 2362 2072117 - 2072103 - G 73 -9.2 -3.66178 | opp_overlap 2072104 2072106, overlap 2072088 CCGCCGAAGGTGAAA GCAGCG GGT CGCCGC TTTTTGCCAGCATAA TERM 2363 2072106 - 2072117 + g 77 -7.2 -4.57569 | opp_overlap 2072088 2072103, overlap 2072104 CCGAAGGTGAAAGCA GCGG GTCG CCGC TTTTTGCCAGCATAA thiM 2073236 - 2072448 - | hydroxyethylthiazole kinase yohL 2073731 - 2073459 - | hypothetical protein TERM 2364 2073967 - 2073935 - g 70 -4 -4.66609 | overlap 2073938 CAGGGCACTCAAAAA CGATGATGGCGGCG TTTAT CATCGCCATCAAAG GCACCATTAAACAGG yohM 2073829 - 2074686 + | nickel/cobalt efflux protein RcnA SDY_2281 2074724 - 2075242 + | hypothetical protein TERM 2365 2075268 - 2075248 - T 100 -8.2 -5.42259 | overlap 2075249 TCATCGCTAAAAAAA GCCCCCTC GGAGA GAGGGGGA AATGCAGACACCTTA TERM 2366 2075267 - 2075249 - T 95 -11.7 -3.84633 | overlap 2075248 CATCGCTAAAAAAAG CCCCCTC GGAGA GAGGGGG AAATGCAGACACCTT SDY_2282 2075584 - 2075324 - | hypothetical protein SDY_2283 2075779 - 2075961 + | iso-IS1 ORF2 SDY_2284 2075958 - 2076173 + | iso-IS1 ORF2 SDY_2285 2077158 - 2076763 - | iso-IS1 ORF2 SDY_2286 2077353 - 2077556 + | hypothetical protein yehB 2079334 - 2077541 - | putative outer membrane protein insB 2079832 - 2079455 - | IS1 ORF2 insA 2080152 - 2079877 - | IS1 ORF1 SDY_2290 2080807 - 2080181 - | IS600 ORF2 SDY_2291 2081250 - 2080948 - | IS600 ORF1 TERM 2367 2081359 - 2081393 + r 72 -5.7 -4.46675 | opp_overlap 2081362 2081363, overlap 2081361 2081364 GCAGAAGTAAGAGTG AAATGTTGCCGGATG GCACG CATCCGGCAATGATA TTTATTCTGTTGGCT TERM 2368 2081361 - 2081391 + r 72 -8.3 -3.83144 | opp_overlap 2081362 2081363, overlap 2081359 2081364 AGAAGTAAGAGTGAA ATGTTGCCGGATG GCACG CATCCGGCAATGA TATTTATTCTGTTGG TERM 2369 2081389 - 2081363 - R 74 -10.9 -2.86618 | opp_overlap 2081361 2081359 2081364, overlap 2081362 AAGTAAGAGTGAAAT GTTGCCGGATG GCACG CATCCGGCAAT GATATTTATTCTGTT TERM 2370 2081364 - 2081388 + r 88 -14.4 -2.9735 | opp_overlap 2081363 2081362, overlap 2081361 2081359 AGTAAGAGTGAAATG TTGCCGGATG GCACG CATCCGGCAA TGATATTTATTCTGT yceA 2082447 - 2081395 - | hypothetical protein TERM 2371 2081744 - 2081720 - G 70 -4.1 -4.63218 | opp_overlap 2081741 2081743 TTTTTGCCAATAAAA CGCACCGGCAA GCC CTGCTCGCGCG CCTTACGGGCGTATT TERM 2372 2082392 - 2082405 + g 70 -6.7 -4.10429 | overlap 2082381 CGCGGTTCGCTCTCA GCCAA CATT TTGGC TTTTAACGCGTCGTT TERM 2373 2082853 - 2082831 - g 72 -8.4 -3.73224 | TTACGTTTTATGAAA CGACGCGCAA AAA TTGTGCATCG CAACCTGGAACTGTG TERM 2374 2083204 - 2083194 - g 70 -5.4 -4.41348 | TTGCGCTCAAATAAA TCGA TGC TCGA CCGCAAAGATTTAAA htrB 2082672 - 2083592 + | lipid A biosynthesis lauroyl acyltransferase SDY_2294 2084792 - 2084292 - | IS911 ORF2 TERM 2375 2084679 - 2084690 + gT 77 -5.8 -4.63218 | opp_overlap 2084675 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SDY_2295 2085111 - 2084761 - | IS911 ORF2 TERM 2376 2085032 - 2085052 + gr 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_2296 2085440 - 2085138 - | IS911 ORF1 TERM 2377 2085555 - 2085580 + H 70 -4.8 -4.38712 | opp_overlap 2085555 CGAATCATCTAGATA GCGCTATATA ACCCTG TATATAGAGC TTTTCTAGGAGTCAA yceE 2085936 - 2086907 + | putative transport protein SDY_2298 2086862 - 2086960 + | hypothetical protein msyB 2086987 - 2087364 + | hypothetical protein yceK 2087592 - 2087365 - | hypothetical protein TERM 2378 2087610 - 2087640 + r 77 -11.3 -3.18094 | opp_overlap 2087616, overlap 2087616 GATACCTCTTCCGTA AAAAAATACCGGC ATAAC GCCGGTATTTTTA TTGGCTCATTGTTTT TERM 2379 2087616 - 2087634 + r 100 -10.3 -5.11063 | opp_overlap 2087616, overlap 2087610 TCTTCCGTAAAAAAA TACCGGC ATAAC GCCGGTA TTTTTATTGGCTCAT TERM 2380 2087634 - 2087616 - R 100 -11 -5.40072 | opp_overlap 2087610 2087616 TCTTCCGTAAAAAAA TACCGGCA TAA CGCCGGTA TTTTTATTGGCTCAT mdoH 2090308 - 2087765 - | glucosyltransferase MdoH mdoG 2091836 - 2090301 - | glucan biosynthesis protein G TERM 2381 2091392 - 2091402 + g 88 -5.4 -5.22289 | CCCCGAGCATGCTGA CGAT TTC ATCG TTTTTATCTTTGCTG TERM 2382 2092750 - 2092773 + G 100 -3.2 -5.64274 | gap 1, overlap 2092752 2092753 AAACGAATAAAAAAT TC-TCGATGGT AAA ACTATCGGTGA TTTTTTTGTGCCTCG mdoC 2092230 - 2093387 + | glucans biosynthesis protein ymdC 2094876 - 2093395 - | putative synthase TERM 2383 2093439 - 2093469 + gT 100 -11.8 -5.03715 | opp_overlap 2093442, overlap 2093442 ACGCCAGTCTGACCA TAACCCGCTTCCAG AAA CTGGTGGCGGGTTC TTTTTTGAGAATAAT TERM 2384 2093466 - 2093442 - GT 80 -11.3 -3.41051 | opp_overlap 2093439 2093442 CCAGTCTGACCATAA CCCGCTTCCAG AAA CTGGTGGCGGG TTCTTTTTTGAGAAT TERM 2385 2093442 - 2093466 + gT 100 -13.5 -4.62085 | opp_overlap 2093442, overlap 2093439 CCAGTCTGACCATAA CCCGCTTCCAG AAA CTGGTGGCGGG TTCTTTTTTGAGAAT TERM 2386 2093476 - 2093487 + gT 70 -4.4 -4.46112 | GGCGGGTTCTTTTTT GAGA ATAA TCTC TTTCTTTGCATGACG SDY_2305 2095351 - 2094818 - | hypothetical protein SDY_2306 2095757 - 2095446 - | hypothetical protein insA 2096116 - 2096391 + | IS1 ORF1 insB 2096436 - 2096813 + | IS1 ORF2 SDY_2309 2096849 - 2097142 + | IS600 ORF1 SDY_2310 2097272 - 2097985 + | IS600 ORF2 yceI 2098569 - 2097982 - | hypothetical protein SDY_2312 2099139 - 2098573 - | putative cytochrome TERM 2387 2098741 - 2098706 - G 77 -6 -4.66609 | gap 1, overlap 2098707 CATGCGAGCCAAAAA TGCAGG-GCACCGGCAA AGT CTGCCTGTGCGCCAGCG TCGGCAAGGGGCGCG SDY_2313 2099380 - 2099117 - | hypothetical protein SDY_2314 2099575 - 2099970 + | iso-IS1 ORF2 TERM 2388 2100242 - 2100223 - T 100 -9.3 -5.28683 | ATGAACACTAAAAAA GGGCAGA AAAGAA TCTGCCC TTGAGGAAATAACCT TERM 2389 2100390 - 2100358 - T 82 -13.5 -3.05384 | opp_overlap 2100356 2100355, overlap 2100361 TTTGCGCTCATCCAA TGATACAGGGCAGTA AAT TTCTGCCCTGTAACA CACCTTTTATTACGC TERM 2390 2100387 - 2100361 - T 83 -13.8 -2.75064 | opp_overlap 2100356 2100355, overlap 2100358 GCGCTCATCCAATGA TACAGGGCAGTA AAT TTCTGCCCTGTA ACACACCTTTTATTA fruA 2102091 - 2100400 - | fructose-specific PTS system IIBC component fruK 2103046 - 2102108 - | 1-phosphofructokinase fruB 2104176 - 2103046 - | bifunctional fructose-specific PTS IIA/HPr protein TERM 2391 2104191 - 2104211 + r 79 -10.5 -3.48276 | TAGTTCTCCTCTCCT GCTGAATTG AAA CGATTCAGC TTCTATGAGAAAAAA SDY_2318 2104843 - 2104448 - | iso-IS1 ORF2 ycbP 2105310 - 2105885 + | NAD(P)H-dependent FMN reductase ycbO 2105878 - 2106870 + | alkanesulfonate transporter substrate-binding subunit SDY_2321 2106830 - 2107378 + | hypothetical protein TERM 2392 2107503 - 2107466 - g 70 -10.5 -2.75769 | gap 1, overlap 2107465 TCGCCAAAGCACAAG CCGCATTCGCCCGCACGG ATT CCGTG-GGGCAACAGCGA ATGGCAGCGCTACAT SDY_2322 2107375 - 2107833 + | hypothetical protein TERM 2393 2108031 - 2108059 + G 81 -5.9 -4.74103 | overlap 2108032 2108035 2108035 2108040 2108041 TTGTGGCAGCATCTG GCGATCAGCTCCT GGC GGGCGCTGATTGG TTTTTCAATTGGCGG TERM 2394 2108032 - 2108058 + G 71 -9.4 -3.4398 | overlap 2108031 2108035 2108035 2108040 2108041 TGTGGCAGCATCTGG CGATCAGCTCCT GGC GGGCGCTGATTG GTTTTTCAATTGGCG ssuC 2107845 - 2108636 + | alkanesulfonate transporter permease subunit ycbE 2108866 - 2109384 + | putative ATP-binding component of a transport system TERM 2395 2109434 - 2109376 - T 79 -8.19999 -4.37092 | gap 1, opp_overlap 2109387 2109432, overlap 2109387 ACTCGCCTGAGAAAA CAGGGGTA-AAATCCCCGAATGGCGGC GCTATT GCCGCCATTCGGGGATTTATTAAGCCA GTGCTTTGGTGATCT TERM 2396 2109422 - 2109387 - T 100 -24.9 -4.16146 | opp_overlap 2109387, overlap 2109376 AAAACAGGGGTAAAA TCCCCGAATGGCGGC GCTATT GCCGCCATTCGGGGA TTTATTAAGCCAGTG TERM 2397 2109387 - 2109422 + T 100 -25.6 -4.1552 | opp_overlap 2109376 2109387 AAAACAGGGGTAAAA TCCCCGAATGGCGGCG CTAT TGCCGCCATTCGGGGA TTTATTAAGCCAGTG pepN 2112039 - 2109427 - | aminopeptidase N TERM 2398 2109497 - 2109509 + g 70 -4.7 -4.47328 | overlap 2109498 CCTTTCAACTGTTCC AGCGC CGC GCGCA TTTTCTCCTGACGTT TERM 2399 2109903 - 2109891 - G 78 -9.1 -3.86822 | CAACCGCCGCAGAAA GCGCT GCC AGCGC ATCGGTCATATTGTT TERM 2400 2109998 - 2110008 + g 72 -6.8 -4.19472 | CGCAGGCAGGCATTA CGCA GAG TGCG TTTTGCAATATCTTC pncB 2112305 - 2113507 + | nicotinate phosphoribosyltransferase TERM 2401 2113516 - 2113533 + F 100 -9.1 -5.58209 | opp_overlap 2113513 CAGTTAATATCATCA GGGAGCT AATC GGCTCCC TTTTTTTACCTTTAA asnC 2113677 - 2115077 + | asparaginyl-tRNA synthetase TERM 2402 2115092 - 2115111 + F 100 -13.6 -5.43621 | opp_overlap 2115092 ATTTAGCGTCTACAA GAGCCAGC ACCC GCTGGCTC TTTTTTATCCTTTCT TERM 2403 2115111 - 2115092 - f 90 -13.6 -3.30243 | opp_overlap 2115092 ATTTAGCGTCTACAA GAGCCAGC ACCC GCTGGCTC TTTTTTATCCTTTCT TERM 2404 2115227 - 2115253 + F 86 -4.4 -5.4833 | opp_overlap 2115228 2115232, overlap 2115228 2115231 ATTTACGCACAAAAA ATAATCCGCATT CTT ATTGCGGGTTAG TTTTTTCTTAGCTGA TERM 2405 2115252 - 2115228 - f 85 -5.7 -5.28176 | opp_overlap 2115227 2115228 2115231, overlap 2115232 TTTACGCACAAAAAA TAATCCGCATT CTT ATTGCGGGTTA GTTTTTTCTTAGCTG TERM 2406 2115228 - 2115252 + F 71 -7.9 -3.87914 | opp_overlap 2115228 2115232, overlap 2115227 2115231 TTTACGCACAAAAAA TAATCCGCATT CTT ATTGCGGGTTA GTTTTTTCTTAGCTG TERM 2407 2116248 - 2116228 - g 70 -4.7 -4.57569 | gap 1, opp_overlap 2116228 2116239, overlap 2116231 GTACCTGGGTAAAAA CGAGCGTG ACTCTG CACGC-CG TTCTAACGGCGACGG ompF 2115680 - 2116768 + | outer membrane protein F TERM 2408 2116815 - 2116800 - f 100 -9 -5.07107 | opp_overlap 2116800 TAAATGCCGAAAAAA CAGGAC GTTG GTCCTG TTTTTTTTATGCCTT TERM 2409 2116800 - 2116815 + F 100 -9 -5.97575 | opp_overlap 2116800 TAAATGCCGAAAAAA CAGGAC GTTG GTCCTG TTTTTTTTATGCCTT TERM 2410 2117466 - 2117444 - g 89 -14.2 -3.18912 | opp_overlap 2117433 CGATGCACTGATTAA CAGCCTGAAC GAA GCTCAGGCTG GCGACGTAGTGCTGT aspC 2116953 - 2118143 + | aromatic amino acid aminotransferase TERM 2411 2118185 - 2118154 - T 82 -8 -4.62471 | opp_overlap 2118161, overlap 2118161 TGTAAGCGTTAAAAA CAATGAAGCCCGCT GAAA AGCGGGCTTTTTTA TGCGCCTTTACCAGA TERM 2412 2118161 - 2118178 + T 100 -12.7 -5.25803 | opp_overlap 2118154 2118161 GTTAAAAACAATGAA GCCCGCT GAAA AGCGGGC TTTTTTATGCGCCTT TERM 2413 2118178 - 2118161 - T 93 -12.7 -3.74868 | opp_overlap 2118161, overlap 2118154 GTTAAAAACAATGAA GCCCGCT GAAA AGCGGGC TTTTTTATGCGCCTT ycbL 2118840 - 2118193 - | hypothetical protein ycbK 2119415 - 2118867 - | hypothetical protein ycbB 2121443 - 2119596 - | hypothetical protein SDY_2333 2122024 - 2121629 - | iso-IS1 ORF2 TERM 2414 2122389 - 2122414 + r 73 -7.5 -4.1899 | opp_overlap 2122393, overlap 2122393 CATCACCCGAAAAAG AAAAGGCGGCA TTGC TGCCGCCTTCA TTTTAACTCGCCTAG TERM 2415 2122410 - 2122393 - R 100 -12.7 -5.27023 | opp_overlap 2122389 2122393 ACCCGAAAAAGAAAA GGCGGCA TTGC TGCCGCC TTCATTTTAACTCGC TERM 2416 2122393 - 2122410 + r 93 -12.7 -3.69605 | opp_overlap 2122393, overlap 2122389 ACCCGAAAAAGAAAA GGCGGCA TTGC TGCCGCC TTCATTTTAACTCGC mukB 2126877 - 2122426 - | cell division protein MukB TERM 2417 2123483 - 2123497 + g 72 -8.5 -3.82202 | TCACGACGGTGTAAT CGGCG CTCAA CGCCG TTATCTTTCACCATG TERM 2418 2125490 - 2125505 + g 81 -4.7 -5.10497 | GCCATGCTCATTTTC TGCTC AAGAGA GAGCA TTTTTTCAGTCGCTT TERM 2419 2125642 - 2125688 + g 70 -6.5 -4.15565 | gap 1, opp_overlap 2125683, overlap 2125646 GTTATACTGGATCGC GCGCGTTTGCTGGACGTCCAGC GCCT GCTGGTAGTC-AGCAAGCTGGC TTTTCAGCTCGTCCA mukE 2127554 - 2126877 - | condesin subunit E TERM 2420 2127510 - 2127495 - G 70 -10.4 -3.17075 | GCGGCCTGAACGTAA GGCGCT GTCC AGCGCC GGAAATAACGGATTC mukF 2128884 - 2127562 - | condesin subunit F TERM 2421 2127716 - 2127687 - G 78 -9.3 -3.99374 | gap 1, opp_overlap 2127685, overlap 2127688 2127704 CCTGATCAATAACAA TGCGCGCAACGTCA AAG TGACGT-GCACGCG GATACTGTGACAGAT TERM 2422 2127715 - 2127688 - G 79 -12.8 -2.99142 | gap 1, opp_overlap 2127685, overlap 2127687 2127704 CTGATCAATAACAAT GCGCGCAACGTCA AAG TGACGT-GCACGC GGATACTGTGACAGA TERM 2423 2127744 - 2127773 + g 70 -5.7 -4.36914 | gap 1, opp_overlap 2127704 GATATTCGCGTACCA CCAGACCAAGATCC AGC GGCACTTG-TCTGG TTTTGTACACAGCAA smtA 2129666 - 2128881 - | putative metallothionein SmtA TERM 2424 2129120 - 2129135 + g 100 -2.4 -5.93252 | overlap 2129122 GGTCGCGTGGATAAT CTGGCG AAAG CGTCCG TTTTTTCTTTTTCGG ycbC 2129804 - 2130583 + | hypothetical protein SDY_2339 2131453 - 2130560 - | hypothetical protein kdsB 2132353 - 2131607 - | 3-deoxy-manno-octulosonate cytidylyltransferase ycaR 2132532 - 2132350 - | hypothetical protein ycaQ 2133816 - 2132584 - | hypothetical protein TERM 2425 2132858 - 2132848 - G 70 -6.8 -4.00512 | opp_overlap 2132848 2132847 CGGCAGAACAAAATA GCCA TAC TGGC GTTTCGGCGCTGGAG TERM 2426 2132918 - 2132907 - G 74 -2.2 -5.10154 | gap 1, opp_overlap 2132907 AGCTAAAATCAAAAA GCTGC TCT GC-GC GTTTGCGATCCCAGA lpxK 2134839 - 2133853 - | tetraacyldisaccharide 4'-kinase TERM 2427 2134433 - 2134443 + g 70 -6.8 -4.09685 | ACATCAGGGTGTTGC GCCA GAA TGGC TTTTACCGCATCAGA TERM 2428 2134704 - 2134728 + g 70 -4.1 -4.61873 | CCACGACAACCGGTA CTGGGGCACGC CAG GCACGCTTCAG TTTTAGTTTATAGCA TERM 2429 2134804 - 2134785 - G 75 -11.4 -2.88677 | overlap 2134746 CATACAACCAGGAGA GTGGCAGC AATA GCCGCCAC AAAGGGGATTCACCA msbA 2136584 - 2134836 - | lipid transporter ATP-binding/permease protein TERM 2430 2135742 - 2135729 - G 77 -6.7 -4.44211 | TTGAAGAGAAAACAA CGGTA ATCG TACCG GCAGTCAGGCTATCC ycaI 2138885 - 2136621 - | hypothetical protein TERM 2431 2138231 - 2138244 + g 79 -3.9 -5.13137 | AATGCGCCGTTCCAG TATCA CGCA TGATA TTTTTGATTTCTTTA TERM 2432 2139070 - 2139040 - R 83 -9.8 -4.11404 | opp_overlap 2139048, overlap 2139041 2139048 TCCAGATTAGATAAA TGAAAAAAGCACCC GAC AGGTGCTTTTCTCT CGCTCAAGTTTGAGT TERM 2433 2139069 - 2139041 - R 82 -13.3 -3.0636 | opp_overlap 2139048, overlap 2139040 2139048 CCAGATTAGATAAAT GAAAAAAGCACCC GAC AGGTGCTTTTCTC TCGCTCAAGTTTGAG TERM 2434 2139048 - 2139062 + r 77 -7.1 -4.55287 | opp_overlap 2139041 2139040 2139048 AGATAAATGAAAAAA GCACC CGACA GGTGC TTTTCTCTCGCTCAA TERM 2435 2139062 - 2139048 - R 95 -7.8 -5.4387 | opp_overlap 2139048, overlap 2139041 2139040 AGATAAATGAAAAAA GCACCC GAC AGGTGC TTTTCTCTCGCTCAA ihfB 2139376 - 2139092 - | integration host factor subunit beta TERM 2436 2139427 - 2139457 + r 93 -14.9 -3.33696 | gap 1, opp_overlap 2139433, overlap 2139429 TGCTGTTGCTGCATT G-ATTAAGGGCGGC CGTA GCCGCCCTTAATGC TTGATTACAGGACGA TERM 2437 2139429 - 2139454 + r 100 -17.7 -2.84098 | opp_overlap 2139433, overlap 2139427 CTGTTGCTGCATTGA TTAAGGGCGGC CGTA GCCGCCCTTAA TGCTTGATTACAGGA TERM 2438 2139450 - 2139433 - R 86 -14.1 -3.18264 | opp_overlap 2139429 2139427 TGCTGCATTGATTAA GGGCGGC CGTA GCCGCCC TTAATGCTTGATTAC TERM 2439 2139525 - 2139504 - R 87 -9.5 -4.29929 | overlap 2139520 AGTAAACTCAACAAA CTTCGGAAT AAAA ATCCCGAAG AGTCAGAGAATTACT rpsA 2141209 - 2139536 - | 30S ribosomal protein S1 TERM 2440 2141035 - 2141045 + g 88 -8.2 -4.63527 | overlap 2141028 2141032 CCTGGATTTCCAGCT CGCC CTG GGCG TTTTTGAACTGCTCA cmk 2142003 - 2141320 - | cytidylate kinase TERM 2441 2141451 - 2141463 + g 70 -6.9 -4.04806 | CCGCTCGGTTACGAT CGCGG TCG TCGCG TTCTTTGATCTCGGC TERM 2442 2141684 - 2141647 - G 81 -10.5 -3.57561 | opp_overlap 2141669 2141682, overlap 2141669 2141679 TGGTAATTCGCGAAA CGCGCGTTGGCGACGCA ATAA TGCTTCACGAACGCGTG GGAATGCCGCGACTT TERM 2443 2142060 - 2142040 - R 76 -8.9 -3.66784 | opp_overlap 2142023, overlap 2142023 GTACCGTTAACATAA CCGCGCGCA TTA TACGCGCCG ACGCCACAAATCGTT ycaL 2142940 - 2142176 - | putative heat shock protein SDY_2350 2142994 - 2143404 + | insertion sequence 2 OrfA protein SDY_2351 2143362 - 2144267 + | insertion element IS2 transposase InsD TERM 2444 2144450 - 2144475 + F 100 -9.8 -5.61596 | opp_overlap 2144450 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 2445 2144475 - 2144450 - f 72 -9.1 -3.61398 | opp_overlap 2144450 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SDY_2352 2144465 - 2145811 + | IS4 orf TERM 2446 2145822 - 2145793 - T 100 -9.3 -5.04385 | overlap 2145795 CACAGCCCCAAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACGGCAATGTGCCG TERM 2447 2145820 - 2145795 - T 100 -16.3 -4.14633 | overlap 2145793 CAGCCCCAAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACGGCAATGTGC aroA 2147167 - 2145893 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2448 2147218 - 2147198 - R 100 -12.6 -5.4659 | CAACAGAAATAAAAA CCCCACAG GCTGG CTGTGGGG ATTAAGCAAAATTTC serC 2148326 - 2147238 - | phosphoserine aminotransferase TERM 2449 2147709 - 2147730 + g 73 -3.7 -4.82901 | gap 1, opp_overlap 2147702, overlap 2147711 ACGAACGATGACGAT TGTCAGGCCT GCC GGGCC-GATA TTTTTCTGCGCGCCA ycaP 2149217 - 2148525 - | hypothetical protein TERM 2450 2149191 - 2149174 - G 77 -6.3 -4.62054 | CCAAGGAAATCAAAA GGCACTT TATC AAATGCC ATACGGTGGAGATCG TERM 2451 2149827 - 2149845 + G 76 -7.4 -4.20368 | overlap 2149812 CTGCCGTTTACACGT CAGTCTGA TAA TCAGACCG TTTATATTCCGATGA TERM 2452 2150761 - 2150751 - g 75 -6.8 -4.41047 | overlap 2150752 ATCGGTGAATTAAAA GCCA TGC TGGC GCTGGCTGGTGGCAA TERM 2453 2150981 - 2150993 + G 70 -4.7 -4.4715 | opp_overlap 2150980, overlap 2150980 CAGTGCGGCAATGAG CGGCG AAG CGGCG TTTTATGGCTTGCAA ycaO 2149464 - 2151107 + | hypothetical protein TERM 2454 2151140 - 2151110 - f 70 -2.5 -5.07652 | opp_overlap 2151110 2151117, overlap 2151115 2151117 CTGGGCAAAATAAAA TCAAATAGCCTAC GTAAT GTAGGCTTAATGA TTCGTCTGAGTTATA TERM 2455 2151135 - 2151115 - f 72 -5.4 -4.41486 | opp_overlap 2151110 2151117, overlap 2151110 2151117 CAAAATAAAATCAAA TAGCCTAC GTAAT GTAGGCTT AATGATTCGTCTGAG TERM 2456 2151159 - 2151181 + F 74 -11.3 -2.86654 | opp_overlap 2151159, overlap 2151158 GTCTGAGTTATATTA CGGGGCGTT TTTTT AATGCCCCG CTTTACATATATTTG focA 2151514 - 2152371 + | formate transporter pflB 2152426 - 2154708 + | formate acetyltransferase 1 TERM 2457 2154783 - 2154739 - f 82 -7.2 -4.80882 | gap 1, opp_overlap 2154751, overlap 2154740 2154751 ATCGTACAGTAAAAA GCGTAC-AATAAAGGCTCCAC GAAA GTGGGGCCTTTTTTAGCACGA GAGCCTTTTTTGTCA TERM 2458 2154782 - 2154740 - f 79 -10.7 -3.47806 | gap 1, opp_overlap 2154751, overlap 2154739 2154751 TCGTACAGTAAAAAG CGTAC-AATAAAGGCTCCAC GAAA GTGGGGCCTTTTTTAGCACG AGAGCCTTTTTTGTC TERM 2459 2154751 - 2154770 + F 100 -11.4 -5.00616 | opp_overlap 2154751 2154740 2154739 AAAGCGTACAATAAA GGCTCCAC GAAA GTGGGGCC TTTTTTAGCACGAGA TERM 2460 2154770 - 2154751 - f 83 -9.2 -4.33851 | opp_overlap 2154751, overlap 2154740 2154739 AAAGCGTACAATAAA GGCTCCAC GAAA GTGGGGCC TTTTTTAGCACGAGA TERM 2461 2155077 - 2155094 + G 72 -7.7 -3.87869 | opp_overlap 2155077 GATTTGATGAAGGAA GTGGTGA CCTA TCGCCAC TTTATGAACGCTTCC TERM 2462 2155205 - 2155222 + G 71 -2.7 -4.75219 | gap 1 AGAAGGCATTCATAC CTGTCTGG ACA CCA-ACGG TTTTGTTCGTCGTTA TERM 2463 2155576 - 2155554 - g 72 -6.3 -4.34263 | overlap 2155555 GGTGAAGAATACAAA CTCGATGGT GTTAA ACCACCGAA GAAAGAAACCATGGA pflA 2154900 - 2155640 + | pyruvate formate lyase-activating enzyme 1 TERM 2464 2155676 - 2155653 - f 88 -12.5 -3.53761 | opp_overlap 2155653 TAATTTCCCCGTAAA GCGGCAACT TTATTG AGTTGCCGC TTTTTTATTCCGCGC TERM 2465 2155653 - 2155676 + F 100 -13.2 -5.4505 | opp_overlap 2155653 TAATTTCCCCGTAAA GCGGCAACTT TATT GAGTTGCCGC TTTTTTATTCCGCGC SDY_2360 2156512 - 2156907 + | iso-IS1 ORF2 SDY_2361 2159043 - 2158741 - | IS600 ORF1 TERM 2466 2159222 - 2159203 - R 77 -3.6 -5.17353 | overlap 2159206 2159209 ACACCCATGAAAAAA CAACCA CCAGCCCC TGGTTG GCATAGTTATTAACA TERM 2467 2159222 - 2159206 - R 78 -6.5 -4.67552 | overlap 2159203 2159209 CCCATGAAAAAACAA CCACCAG CCC CTGGTTG GCATAGTTATTAACA TERM 2468 2159522 - 2159491 - R 100 -13.2 -5.82036 | opp_overlap 2159486 2159491 AGAAGAAACAAAAAA GCAGAGTGTGAA ACAGTAAG TTCACACTCTGC TTGAATTCATTTACA TERM 2469 2159491 - 2159522 + r 83 -13.2 -3.26596 | opp_overlap 2159491, overlap 2159486 AGAAGAAACAAAAAA GCAGAGTGTGAA ACAGTAAG TTCACACTCTGC TTGAATTCATTTACA ycaD 2160681 - 2159533 - | MFS family transporter ycaC 2160996 - 2161451 + | hypothetical protein TERM 2470 2161652 - 2161625 - T 83 -6.2 -5.04733 | opp_overlap 2161630, overlap 2161630 GAAGCAGAAATAAAA GAGAACCGGGGC CGAA ACCCCGGTTGTT ACTGATTAGCTTGCG TERM 2471 2161630 - 2161647 + T 79 -9.8 -3.77722 | opp_overlap 2161630 2161625 AGAAATAAAAGAGAA CCGGGG CCGAAA CCCCGG TTGTTACTGATTAGC TERM 2472 2161647 - 2161630 - T 87 -10.5 -4.14927 | opp_overlap 2161630, overlap 2161625 AGAAATAAAAGAGAA CCGGGGC CGAA ACCCCGG TTGTTACTGATTAGC dmsC 2162521 - 2161658 - | anaerobic dimethyl sulfoxide reductase subunit C dmsA 2165507 - 2163150 - | anaerobic dimethyl sulfoxide reductase subunit A TERM 2473 2165807 - 2165794 - R 100 -9.5 -5.72616 | opp_overlap 2165794 AGGGAGACAAAAAAA GCGCC CGCA GGCGC TTTTTAGATTCAGAA TERM 2474 2165794 - 2165807 + r 100 -9.5 -4.74103 | opp_overlap 2165794 AGGGAGACAAAAAAA GCGCC CGCA GGCGC TTTTTAGATTCAGAA serS 2167125 - 2165833 - | seryl-tRNA synthetase ycaJ 2168559 - 2167216 - | recombination factor protein RarA lolA 2169184 - 2168570 - | outer-membrane lipoprotein carrier protein ftsK 2173442 - 2169336 - | DNA translocase FtsK TERM 2475 2171734 - 2171771 + g 74 -3.2 -5.00616 | opp_overlap 2171727 2171729, overlap 2171733 2171731 2171730 2171761 AGACTGAAGACTGGC GCGGCAACGGTTGCGG CAGCCC CCGTCGCCAGTGTCGC TTTTTTCACGCCAGA TERM 2476 2173523 - 2173487 - R 79 -8.8 -4.13767 | gap 1, opp_overlap 2173490 2173494, overlap 2173491 2173494 TGCCCGATGCTAAAA CGGACAACAGTACCAGG TTAC CCCAGTACTGTTG-CTG TATGGATTAACAGGA TERM 2477 2173520 - 2173491 - R 83 -13.7 -2.75577 | opp_overlap 2173490 2173494, overlap 2173487 2173494 CGATGCTAAAACGGA CAACAGTACCAGG TTAC CCCAGTACTGTTG CTGTATGGATTAACA TERM 2478 2173517 - 2173494 - R 75 -9.6 -3.52113 | opp_overlap 2173494 2173490, overlap 2173491 2173487 TGCTAAAACGGACAA CAGTACCAGG TTAC CCCAGTACTG TTGCTGTATGGATTA lrp 2174071 - 2173577 - | leucine-responsive transcriptional regulator TERM 2479 2174753 - 2174736 - g 81 -6.9 -4.66163 | overlap 2174749 ACCGGCATGGAAAAA GGCGGCC AACT GACCACC ACCACGGAAGTGGAA trxB 2174616 - 2175581 + | thioredoxin reductase TERM 2480 2175607 - 2175641 + F 83 -6.5 -5.06103 | gap 1, opp_overlap 2175608 2175611, overlap 2175611 CAGTAACAAAAGTAA AGAAGGCGACACCATG CGAC TATGG-GTCGCCTTTA TTTTTTCCCCGTTGT TERM 2481 2175640 - 2175608 - f 74 -7.1 -4.33854 | gap 1, opp_overlap 2175607 2175611, overlap 2175611 AGTAACAAAAGTAAA GAAGGCGACACCAT GCGACT ATGG-GTCGCCTTT ATTTTTTCCCCGTTG TERM 2482 2175637 - 2175611 - f 83 -8.8 -4.25231 | gap 1, opp_overlap 2175607 2175611, overlap 2175608 AACAAAAGTAAAGAA GGCGACACCAT GCGACT ATGG-GTCGCC TTTATTTTTTCCCCG TERM 2483 2175611 - 2175637 + F 100 -9.5 -5.04249 | gap 1, opp_overlap 2175611 2175608, overlap 2175607 AACAAAAGTAAAGAA GGCGACACCATG CGAC TATGG-GTCGCC TTTATTTTTTCCCCG cydD 2175704 - 2177470 + | cysteine/glutathione ABC transporter membrane/ATP-binding component cydC 2177471 - 2179192 + | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 2484 2179357 - 2179369 + G 81 -6.3 -4.7329 | overlap 2179340 CGCCTGTTAATGGCT TACCA GCG TGGTA TTTTTCCGTGGTTTT aat 2179234 - 2179938 + | leucyl/phenylalanyl-tRNA--protein transferase infA 2180223 - 2180441 + | translation initiation factor IF-1 TERM 2485 2180484 - 2180500 + T 100 -10.1 -5.56263 | opp_overlap 2180484 AAAGAACGAGTAAAA GGTCGGT TTA ACCGGCC TTTTTATTTTGTGAT TERM 2486 2180500 - 2180484 - T 79 -7.9 -4.40037 | opp_overlap 2180484 AAAGAACGAGTAAAA GGTCGGT TTA ACCGGCC TTTTTATTTTGTGAT TERM 2487 2180796 - 2180815 + T 100 -10 -5.82388 | opp_overlap 2180796 2180794 CATATTTAAAGAAGA GCTCGTAC GAAA GTACGGGC TTTTTTTTCGCATTT TERM 2488 2181099 - 2181072 - T 100 -12.8 -5.38054 | CCCCATAAATAAAAA GTCCGTAACCCC TGAC GAGATTACGGAC TTCACCAACCTACCT clpA 2183401 - 2181125 - | ATP-dependent Clp protease ATP-binding subunit TERM 2489 2183423 - 2183436 + r 88 -8.1 -4.85599 | CTCCCCAATTTTTAT GCCTG CATT CAGGC TTTTTCTAGCGTACA clpS 2183751 - 2183431 - | ATP-dependent Clp protease adaptor protein ClpS TERM 2490 2183639 - 2183629 - G 77 -6.8 -4.45738 | opp_overlap 2183629 CACGTCAATAACAAA CTCC ATC GGAG TGTAATCATCATTGA cspD 2184074 - 2184298 + | stationary phase/starvation inducible regulatory protein CspD TERM 2491 2184355 - 2184335 - T 95 -12.6 -4.35926 | opp_overlap 2184335 ATCCTAAAGGCAAAA TGCCAGCC CGATC GGCTGGCA TTTTTATCTCAAAAA TERM 2492 2184335 - 2184355 + T 100 -12.6 -4.96848 | opp_overlap 2184335 ATCCTAAAGGCAAAA TGCCAGCC CGATC GGCTGGCA TTTTTATCTCAAAAA ybjZ 2186323 - 2184371 - | macrolide transporter ATP-binding /permease protein TERM 2493 2185056 - 2185024 - G 85 -13.5 -3.25823 | CTTCCGCCACACCAA TGACTCTGGCGGGCA TAT TGCCGACCAGAATCA CCTCGCCAACCACAT TERM 2494 2185288 - 2185300 + g 75 -5.5 -4.66163 | CAGGTGTGGCTGAAG CGACC CAC GGTTG TTTTTGGATGGCGAT TERM 2495 2186095 - 2186057 - G 70 -3.7 -4.65263 | ACGCTGGAAAATAAA GCCGAAATGCTCGCG GTGCAGTTG CGCCAGCGCATCGGC GTCCAGCGTGGCAAC SDY_2383 2187369 - 2186320 - | macrolide transporter subunit MacA TERM 2496 2187643 - 2187654 + G 71 -3 -4.7373 | TGGCATCGCCGTAGT TTTC GCCA GAAA TTTTTGCTGCGCTCG TERM 2497 2188451 - 2188402 - g 90 -6.6 -5.14965 | gap 3, overlap 2188403 2188404 ATCGCCAGTAAAAAA CG-GGCTGAATACCGTCG-GC-GCT ATG AGATGCTCGACGCTATTCAGCCACA AATGGCCACGATGTT TERM 2498 2188448 - 2188404 - g 73 -11.6 -2.80472 | gap 2, overlap 2188403 2188402 CGCCAGTAAAAAACG GGCTGAATACCGTCG-GC-GCT ATG AGATGCTCGACGCTATTCAGCC ACAAATGGCCACGAT ybjX 2187484 - 2188476 + | putative enzyme ybjD 2190131 - 2188473 - | hypothetical protein insB 2190681 - 2190304 - | IS1 ORF2 insA 2191001 - 2190726 - | IS1 ORF1 aqpZ 2191334 - 2192011 + | aquaporin Z TERM 2499 2193014 - 2193029 + G 74 -3.2 -4.99035 | overlap 2193016 TCTTAGCCTGTTAGT GCCGAT CCTC ATCGCC TTTTTCTCTGCGTAA ybjE 2192145 - 2193044 + | putative surface protein TERM 2500 2193382 - 2193394 + G 95 -9.1 -4.83615 | CGATGTAGACAGCTT TGCGC CAC GCGCA TTTTTCTCAACCCTG ybjW 2193188 - 2194840 + | hydroxylamine reductase TERM 2501 2195214 - 2195226 + G 70 -10.5 -2.71119 | overlap 2195213 GCTGGCGGCAGGCTG CGGCG TCA CGCCG ATTATGTCGATGCGT SDY_2391 2194852 - 2195820 + | HCP oxidoreductase, NADH-dependent TERM 2502 2195830 - 2195855 + F 82 -11.9 -3.38581 | overlap 2195827 GCATAATCGCCTTAT GCCCGATGATA TTCC TTTCATCGGGC TATTTAACCGTTAGT poxB 2195953 - 2197671 + | pyruvate dehydrogenase ybjU 2197708 - 2198709 + | L-threonine aldolase TERM 2503 2199633 - 2199620 - g 84 -3.8 -5.20606 | AAAGAGGAAGAAAAA CTGG TCAACT CCAG CGACTGGGGCTACGA TERM 2504 2199940 - 2199929 - g 72 -4.4 -4.66833 | opp_overlap 2199929 GTTGAACCGGAAAAA CAAC TTAC GTTG TTATTTGGCATGAAA TERM 2505 2200026 - 2200057 + G 72 -5.9 -4.30809 | gap 1, overlap 2200028 CTATCGATGTTCGCG CA-TTCTGGCATCC GCACG GGATGCCGGGGCTG TTTTACTGGGTATTG TERM 2506 2200134 - 2200119 - g 70 -4 -4.68655 | gap 1, overlap 2200120 2200121 GAATGGCAAAACAAA TC-GCCA GAC TGGCAGA ACAAAGCACAGATTA ybjT 2198720 - 2200150 + | putative dTDP-glucose enzyme SDY_2395 2200213 - 2201262 + | putative nucleotide di-P-sugar epimerase or dehydratase SDY_2396 2202089 - 2201259 - | putative regulator SDY_2397 2202409 - 2202086 - | hypothetical protein insA 2203083 - 2203358 + | IS1 ORF1 SDY_2399 2204317 - 2203715 - | hypothetical protein SDY_2400 2204728 - 2204333 - | iso-IS1 ORF2 SDY_2401 2205846 - 2205067 - | hypothetical protein SDY_2402 2206469 - 2206864 + | iso-IS1 ORF2 TERM 2507 2207505 - 2207480 - g 72 -7.5 -3.92373 | TATTTGAGTGACAAA CTGGCAACCCT ACTT AGCGATGCCAG CCGCGATAATAGTCA ybjP 2207399 - 2207785 + | putative lipoprotein artP 2208003 - 2208731 + | arginine transporter ATP-binding subunit artI 2208749 - 2209480 + | arginine 3rd transport system periplasmic binding protein TERM 2508 2209531 - 2209541 + G 74 -8.2 -3.99898 | opp_overlap 2209512, overlap 2209507 CGCCGGGATGACCGT CGGC CTT GCCG TTTGTGCATTGATTG artQ 2209487 - 2210203 + | arginine transporter permease subunit ArtQ artM 2210203 - 2210871 + | arginine transporter permease subunit ArtM TERM 2509 2210973 - 2210917 - T 70 -10.8 -2.5294 | gap 2, overlap 2210914 2210916 TAGGTCTGATAAGAC GCGCCAGCGTCGCATCAGACATCAGTGC GGT GC-CTG-TGCCGGATGCGGCGTGGACGC CTTACCCGGCCTACA TERM 2510 2211039 - 2211013 - T 77 -10.2 -3.4489 | opp_overlap 2211013 AATTCTTATAATGAA GACGGACAACTC ACT AAGTTGTCTGTC TTTTTTTATTTCATT TERM 2511 2211013 - 2211039 + T 100 -11.7 -6.01187 | opp_overlap 2211013 AATTCTTATAATGAA GACGGACAACT CACTA AGTTGTCTGTC TTTTTTTATTTCATT SDY_2409 2211713 - 2211498 - | iso-IS1 ORF2 SDY_2410 2212519 - 2211710 - | IS600 ORF2 SDY_2411 2212962 - 2212660 - | IS600 ORF1 SDY_2412 2213162 - 2213019 - | iso-IS1 ORF2 SDY_2413 2213357 - 2213557 + | hypothetical protein SDY_2414 2214424 - 2213696 - | putative DNA-binding protein Roi of bacteriophage BP-933W TERM 2512 2214473 - 2214458 - R 100 -10.4 -5.5112 | opp_overlap 2214455 2214458 TTCAGCAATAAAAAA CCCAGC CGAA GCTGGG TCGTTGCGTTGGCAA TERM 2513 2214458 - 2214473 + r 72 -10.4 -2.78712 | opp_overlap 2214458, overlap 2214455 TTCAGCAATAAAAAA CCCAGC CGAA GCTGGG TCGTTGCGTTGGCAA SDY_2415 2215356 - 2214493 - | putative antirepressor protein TERM 2514 2215055 - 2215070 + g 74 -2.6 -5.12068 | TTGTTCAGAAAATTA TCAGAA ATGT TTTTGA TTTTTGTTCCGTATA TERM 2515 2215352 - 2215339 - G 100 -8.1 -5.43487 | opp_overlap 2215339 AAACGATATAAAAAA GACGC GGGC GCGTC TCATATCGCTCCGTA SDY_2416 2215810 - 2216118 + | hypothetical protein ninB 2216743 - 2216333 - | putative recombination protein SDY_2418 2217584 - 2216796 - | IS600 ORF2 SDY_2419 2218027 - 2217725 - | IS600 ORF1 TERM 2516 2218510 - 2218500 - g 72 -8.2 -3.82083 | GTAGCAGAAGGTAAA GCGG CTT CCGC AAAATTAATCAGGTC TERM 2517 2218522 - 2218539 + G 70 -4.1 -4.72272 | opp_overlap 2218522, overlap 2218523 CCGCAAAATTAATCA GGTCAAC CCTT GTTGACG TTTTTCGTGAAGCAA SDY_2420 2218110 - 2219165 + | integrase SDY_2421 2219783 - 2219223 - | hypothetical protein TERM 2518 2219377 - 2219391 + g 91 -11.4 -4.08706 | opp_overlap 2219370 AAAAAAATCATATCG CCAGGC AGC GCCTGG TTTATGTCCTGGCCA SDY_2422 2220256 - 2219780 - | hypothetical protein TERM 2519 2220305 - 2220284 - R 81 -8.7 -4.55023 | opp_overlap 2220284, overlap 2220279 CCTAATACGACAAAA GCCCAGACT TTGC AGCCTGGAC TTTTCAATTCAAACA TERM 2520 2220335 - 2220322 - R 74 -8.1 -4.0098 | opp_overlap 2220322 TTTCAATTCAAACAA GGGAG ATAG CTCCC TTTTGGCATGAAGAA TERM 2521 2220322 - 2220335 + r 76 -8.1 -4.13767 | opp_overlap 2220322 TTTCAATTCAAACAA GGGAG ATAG CTCCC TTTTGGCATGAAGAA gyrA 2222984 - 2220357 - | DNA gyrase subunit A TERM 2522 2222112 - 2222132 + g 82 -2.4 -5.45802 | overlap 2222104 AGACTCGTCACGCAG CGCGCTGA TGCCT TCCACGCG TTTTTCTTTTACCAG ubiG 2223131 - 2223853 + | 3-demethylubiquinone-9 3-methyltransferase TERM 2523 2223899 - 2223913 + T 73 -10 -3.30124 | overlap 2223894 2223910 GCCAATGCCTGATGC GACGCT TGC AGCGTC TTATCAGGCCTACAA TERM 2524 2223910 - 2223954 + T 88 -12.3 -3.53811 | overlap 2223899 ATGCGACGCTTGCAG CGTCTTATCAGGCCTAC AAATGCTCTCC GTAGGCCTGATTAGGCG TTTACGCCGCATCCA yfaL 2226156 - 2223994 - | putative ATP-binding component of a transport system TERM 2525 2224034 - 2224021 - G 73 -3.7 -4.87665 | overlap 2224022 2224023 CGTCATCGACAAAAA CCCTG CCGT CTGGG CAAAATCATCACTCC SDY_2426 2226945 - 2226292 - | hypothetical protein SDY_2427 2227698 - 2227168 - | hypothetical protein nrdA 2228442 - 2230727 + | ribonucleotide-diphosphate reductase subunit alpha TERM 2526 2230797 - 2230754 - f 100 -17.7 -3.53811 | opp_overlap 2230746 2230761 2230762, overlap 2230794 2230796 CGGATGCGGCGTAAA CGCCTTATCAGGCCTAC GGCTCGGTTT GTAGGCCTGATAAGACG CGCCAGCGTCGCATC nrdB 2230873 - 2232003 + | ribonucleotide-diphosphate reductase subunit beta yfaE 2232003 - 2232257 + | 2Fe-2S ferredoxin YfaE TERM 2527 2232260 - 2232310 + T 82 -13.5 -3.07113 | gap 1, overlap 2232279 AATCGAGATGTGAAT TGGTTGTAGTGCCAGATACAACGC TTAT GCGTCTTATCTGGC-CTACAACGA TTACATGGCGTAGTA inaA 2232871 - 2232311 - | hypothetical protein SDY_2432 2234232 - 2233042 - | putative antibiotic resistance protein TERM 2528 2233860 - 2233826 - G 90 -4.8 -5.4251 | GCCAGAGAGAAAAAA CTGATGCCCTCCCCAC GTC GGGAGGCCGGGATCAG CCGCGCGGAAATCGT SDY_2433 2234615 - 2235268 + | putative transcriptional regulator TERM 2529 2235305 - 2235273 - T 70 -9.8 -3.07487 | opp_overlap 2235273 2235266, overlap 2235272 GCATATTGTGAAAAG GGCATCCGGTCAGG TTTTG CCTTCCCAGATGCC TGTGTCATTAATTAT glpQ 2236392 - 2235313 - | glycerophosphodiester phosphodiesterase glpT 2237755 - 2236397 - | sn-glycerol-3-phosphate transporter TERM 2530 2236602 - 2236618 + g 79 -3.5 -5.08824 | AGACCGGTAAAGCCC GCTGCCG TTC CTGCCGC TTTTTTCGGTGCCAG TERM 2531 2237034 - 2237053 + g 76 -4.2 -4.94972 | gap 1 ATGAAGATTTGCTTC GCGG-TCAG CTC CTGTTCCGC TTTTTCGTTATAGTC TERM 2532 2237491 - 2237476 - G 70 -6 -4.25104 | CTGCGGGCAGGAAAA CGCGCG GATT CGAGCG ATCCGATACCGAACC glpA 2238028 - 2239656 + | sn-glycerol-3-phosphate dehydrogenase subunit A TERM 2533 2239730 - 2239715 - g 72 -4.6 -4.59773 | opp_overlap 2239718, overlap 2239718 CTGCAGCTGCAAAAA CACGGC CTGC GCAGTG CCATTGTCACGCGTG TERM 2534 2240668 - 2240658 - g 74 -8.2 -3.86897 | TTGATGTGCTACAAA CCGC CAC GCGG GGTGAATGGTATAAG glpB 2239646 - 2240905 + | anaerobic glycerol-3-phosphate dehydrogenase subunit B glpC 2240902 - 2242092 + | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 2535 2242105 - 2242132 + F 100 -14.2 -4.65895 | TAAACTCCTTTCTGA TGCCCGGTAAGC ATGT GGTTACCGGGCA TTTTTGCGTACACGA yfaD 2242285 - 2243211 + | hypothetical protein SDY_2440 2244055 - 2243252 - | putative aldolase insB 2245527 - 2245904 + | IS1 ORF2 TERM 2536 2245978 - 2245996 + T 70 -5.2 -4.46212 | GATTCGCTGTTTCGA CAGCCGGT GAA ATGGGCTG TTTTATCGTCGAAAA TERM 2537 2247151 - 2247167 + T 72 -3 -5.03227 | gap 1 GAGTAATGAAGCTTA TGCGCTG GGAG CAG-GCA TTTTCTTTGTGGTAT insB 2247604 - 2247227 - | IS1 ORF2 insA 2247924 - 2247649 - | IS1 ORF1 SDY_2446 2248602 - 2248192 - | putative regulator SDY_2447 2248813 - 2248589 - | hypothetical protein SDY_2448 2249008 - 2249403 + | iso-IS1 ORF2 SDY_2449 2249487 - 2250014 + | hypothetical protein SDY_2450 2250018 - 2250794 + | putative sugar transferase TERM 2538 2251207 - 2251219 + G 77 -3.4 -5.0432 | overlap 2251201 CGCATTGCCCAACTG TCAC CAGAT GTGA TTTTCTCTTTTTATT TERM 2539 2252445 - 2252425 - g 70 -4 -4.59773 | GCCTATGGCGAAAAA GAGGGT TTACAGTTC ACCCTC TTCCGCCCGTTTAAC SDY_2451 2250985 - 2252619 + | putative transformylase SDY_2452 2252964 - 2253854 + | hypothetical protein TERM 2540 2254076 - 2254037 - g 75 -5.7 -4.59773 | opp_overlap 2254035 2254037 2254038 2254075, overlap 2254038 CGTTATTTTGAAAAA CCCATTGCCGGATACTG GATTAA CAGCATTGGGCAATGGC TATTTGGCGCGAATA TERM 2541 2254886 - 2254864 - g 81 -4.8 -5.14563 | opp_overlap 2254867 GCTGGCAGCAAAAAA TAATCCTCTG GCG CTGCGGATTA ATGGCTGGATTAACA arnT 2253854 - 2255506 + | 4-amino-4-deoxy-L-arabinose transferase TERM 2542 2255706 - 2255686 - f 73 -11.1 -2.59431 | opp_overlap 2255685 2255682, overlap 2255682 GTCTTGCAGAACGTA CCGGTAGGC ATT GCCTACCCG ATGTTAAATCTGAAT TERM 2543 2255771 - 2255796 + F 72 -8.9 -3.56142 | opp_overlap 2255764 GGCACGAACCGGTAT CGCCGCGTCAC TGGT GTGGGGTGGCG TTCATTATTGGTGGC TERM 2544 2256114 - 2256136 + G 75 -5.5 -4.65895 | TGGATTGCTTCAATG GTACTTCCC GGCTG GGGAGGGAC TTTTTCGCTGAAAGC SDY_2454 2255838 - 2256224 + | hypothetical protein pmrD 2256512 - 2256252 - | polymyxin resistance protein B menE 2257947 - 2256592 - | O-succinylbenzoic acid--CoA ligase menC 2258906 - 2257944 - | O-succinylbenzoate synthase TERM 2545 2258306 - 2258323 + g 81 -9.1 -4.09511 | opp_overlap 2258305 TTTCACGGGCAAACG CTCGCGA ATCA TCGCGGG TTTTGCACGGCTCTT TERM 2546 2258820 - 2258830 + g 85 -8.2 -4.57837 | opp_overlap 2258817 CAGGCAAACGTACAG CCCG TCG CGGG TTTTTAACCGCCTGT menB 2259763 - 2258906 - | naphthoate synthase TERM 2547 2259808 - 2259785 - R 84 -10.4 -3.91897 | gap 1, opp_overlap 2259798 TCCTTTAGTCAGAAA CGCAAGATCTG CGC CAGA-CTTGCG ATTACGCCAGCGGGA yfbB 2260536 - 2259778 - | acyl-CoA thioester hydrolase YfbB TERM 2548 2259813 - 2259838 + g 74 -9.7 -3.48276 | gap 1, overlap 2259798 CCAGACTTGCGATTA CGC-CAGCGGGA TTT TCCCGATGCGCG TTATGTCCGGCGCGA TERM 2549 2259945 - 2259934 - G 86 -5.8 -5.06472 | ACATAAATAATAAAA CGCA AATG TGCG GGCGCTAAGGTTAGC TERM 2550 2260252 - 2260230 - G 72 -7.6 -3.95051 | CAATAACCCCACAAA GCCCCGCCAG CCC CTGGCAAGCC GCCATCATCGCCACC TERM 2551 2260507 - 2260485 - G 85 -3.3 -5.41746 | opp_overlap 2260489 2260490 2260493, overlap 2260488 2260489 AACCGTGCAAAAAAA CCAGCCAGG GTAAA CCTGGTTTG CCGTGTTTTGTCTGC TERM 2552 2260490 - 2260512 + g 77 -7 -4.53303 | opp_overlap 2260489 2260488 2260485, overlap 2260489 2260493 TGCAAAAAAACCAGC CAGGGTAAAC CTG GTTTGCCGTG TTTTGTCTGCGCGTG menD 2262203 - 2260533 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase TERM 2553 2261563 - 2261573 + g 71 -3.2 -4.81249 | TGCCGCCAGAAGAAC CAGT CGC GCTG TTTTTCACTTTCCAG TERM 2554 2262186 - 2262164 - G 74 -7.6 -4.09739 | opp_overlap 2262167, overlap 2262167 TTAATGCTTCCAAAA TGACCGCCGC CCA GCGTCGGTTA AATGCGCTTACTGAC menF 2263587 - 2262292 - | isochorismate hydroxymutase 2, menaquinone biosynthesis TERM 2555 2262726 - 2262745 + g 78 -5.6 -4.82901 | AGATATCTTCCACCA CCAGCATG TTCT CGCGCTGG TTTTTATCAGCCGCC TERM 2556 2263652 - 2263622 - R 82 -13.4 -2.85847 | opp_overlap 2263610 AAGCCTCACATTATA CGGGGTACTACA AAAAAAA TGCAGTACCCCG GTGTAGGGAGGTTTT elaB 2263971 - 2263666 - | hypothetical protein elaA 2264487 - 2264026 - | hypothetical protein elaC 2264552 - 2265469 + | ribonuclease Z TERM 2557 2265507 - 2265489 - f 93 -8.8 -4.77036 | opp_overlap 2265489 GCTTATTATTAAAAA CAGGGCGA AAC TTGCCCTG TTATCGCAACCCGCG TERM 2558 2265489 - 2265507 + F 77 -11 -3.28712 | opp_overlap 2265489 GCTTATTATTAAAAA CAGGGCGA AAC TTGCCCTG TTATCGCAACCCGCG insA 2266277 - 2266552 + | IS1 ORF1 insB 2266597 - 2266974 + | IS1 ORF2 SDY_2468 2267306 - 2266968 - | iso-IS1 ORF2 TERM 2559 2267797 - 2267774 - H 83 -4 -5.38249 | gap 1 AGCAATTAGAAAAAA CAGTTCGT-TA TCT TACACAAACTG TGCATCCACGTAATG SDY_2469 2268383 - 2268778 + | iso-IS1 ORF2 SDY_2470 2268779 - 2269063 + | hypothetical protein yfbM 2269166 - 2269669 + | hypothetical protein TERM 2560 2269692 - 2269712 + T 74 -8.2 -3.97368 | opp_overlap 2269693, overlap 2269693 AGAGCGCCAAAAAAA ACCGCCGA ACATG TCGGCGGC TTTCTGACTTACAAA TERM 2561 2269693 - 2269711 + T 78 -11.7 -2.981 | opp_overlap 2269693, overlap 2269692 GAGCGCCAAAAAAAA CCGCCGA ACATG TCGGCGG CTTTCTGACTTACAA TERM 2562 2269711 - 2269693 - T 100 -11.7 -5.76949 | opp_overlap 2269692 2269693 GAGCGCCAAAAAAAA CCGCCGA ACATG TCGGCGG CTTTCTGACTTACAA nuoN 2271193 - 2269736 - | NADH dehydrogenase subunit N nuoM 2272729 - 2271200 - | NADH dehydrogenase subunit M TERM 2563 2272521 - 2272509 - G 75 -6.9 -4.41956 | ATAGAGATACCAAAA CGCGG GAT CCACG GCATGTCGAATTCAG TERM 2564 2272922 - 2272938 + r 93 -15.1 -3.10344 | opp_overlap 2272922 TTCTTAGTTCACAGA CCCGGCG CAA CGCCGGG TATATTCACTCAGCC TERM 2565 2272938 - 2272922 - R 93 -15.1 -2.89564 | opp_overlap 2272922 TTCTTAGTTCACAGA CCCGGCG CAA CGCCGGG TATATTCACTCAGCC nuoL 2274801 - 2272960 - | NADH dehydrogenase subunit L TERM 2566 2273456 - 2273474 + g 72 -4.6 -4.68601 | overlap 2273454 CTGTGAGTTACCCCT TTCACG GCGTGAG CGTGAA TTTGTTCTTTTCCGT nuoK 2275100 - 2274798 - | NADH dehydrogenase subunit K nuoJ 2275651 - 2275097 - | NADH dehydrogenase subunit J nuoI 2276205 - 2275663 - | NADH dehydrogenase subunit I TERM 2567 2275939 - 2275967 + g 79 -4.5 -5.00616 | opp_overlap 2275938 GATGCGGAAAAATTC CGGATACCAGCGA CCG TCTTTGGTTTCTG TTTTTTGCAGCGAGA nuoH 2277197 - 2276220 - | NADH dehydrogenase subunit H TERM 2568 2276590 - 2276566 - G 77 -12.1 -2.71712 | overlap 2276565 TCCGGCTGGTCAAAC GGGTGACGGTG ACA CACCGCCACGC CCGCGATGGCAAAGG TERM 2569 2277040 - 2277020 - G 70 -11.1 -2.71364 | TCATGTCCGCAACCA GCTGGAGCG AAC CACCCCAGC CAACACGGTTAGGTC nuoG 2279926 - 2277194 - | NADH dehydrogenase subunit G TERM 2570 2279157 - 2279168 + g 70 -5.8 -4.18018 | TAGTGGTTTACCGTA CCGT TGTA ACGG TTTTCGATACGACGC TERM 2571 2279812 - 2279793 - G 73 -11.4 -2.71144 | CACTGGCGGCAAGCA CCGACGCT TCCC AGCGCCGG ATGCCAGCAAAAGTA TERM 2572 2279937 - 2279957 + r 74 -10.5 -3.16742 | AGCATGCTTCCAGTT TTCTCAGTC AGA GACTGAGAG TTAATCGAAATTCGG nuoF 2281310 - 2279973 - | NADH dehydrogenase I subunit F TERM 2573 2280432 - 2280446 + g 88 -11.4 -3.84451 | GTCAGTCCCCGCGCC GCCTGG CTG CCAGGC TTTAAATTTCAGACC TERM 2574 2281233 - 2281247 + g 81 -10 -3.96148 | overlap 2281232 GCTGCGGTATTCGTC CAGCCA CAC TGGCTG TTTGTCATCGCGCAG nuoE 2281807 - 2281307 - | NADH dehydrogenase subunit E nuoC 2283612 - 2281810 - | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 2575 2283332 - 2283321 - G 72 -5.8 -4.41548 | opp_overlap 2283330, overlap 2283329 2283330 TCAGATGGTAGAAAA CGGA AAAA TCCG CGGCAGGTAACCCTT TERM 2576 2283353 - 2283329 - G 74 -3.3 -4.89729 | opp_overlap 2283330, overlap 2283321 2283330 TAGAAAACGGAAAAA TCCGCGGCAGG TAA CCCTTCGCGGT GTGTGCGCAGACGTT nuoB 2284368 - 2283706 - | NADH dehydrogenase subunit B nuoA 2284827 - 2284384 - | NADH dehydrogenase subunit A TERM 2577 2284529 - 2284515 - G 100 -2.8 -5.71295 | ACACAAAAATAAAAA TTGCAG CTT CCACAA AGCCTACCCAGCCGC TERM 2578 2285381 - 2285416 + r 100 -8.9 -5.09173 | opp_overlap 2285384, overlap 2285382 2285384 GTTCTTTACTAAAAA AAAGCCGCTGGGGTT TAAAAC ATCCCCAGCGGCTCG TTTTTTACACTATTG TERM 2579 2285382 - 2285415 + r 88 -12.4 -3.6442 | opp_overlap 2285384, overlap 2285381 2285384 TTCTTTACTAAAAAA AAGCCGCTGGGGTT TAAAAC ATCCCCAGCGGCTC GTTTTTTACACTATT TERM 2580 2285384 - 2285413 + r 100 -15 -3.38726 | opp_overlap 2285384, overlap 2285382 2285381 CTTTACTAAAAAAAA GCCGCTGGGGTT TAAAAC ATCCCCAGCGGC TCGTTTTTTACACTA TERM 2581 2285413 - 2285384 - R 100 -15 -5.86061 | opp_overlap 2285384 2285382 2285381 CTTTACTAAAAAAAA GCCGCTGGGGTT TAAAAC ATCCCCAGCGGC TCGTTTTTTACACTA lrhA 2286397 - 2285459 - | LysR family NADH dehydrogenase transcriptional regulator TERM 2582 2285680 - 2285706 + g 77 -12.2 -2.78679 | overlap 2285679 GACTCATCATCTCGA CCGGCCTTGCCG TCA CGCCAAGACCGG CTTTCACTGCCGCAC TERM 2583 2286167 - 2286150 - G 72 -6.3 -4.30576 | gap 1, overlap 2286152 GCCTCATCATTAAAA CG-CAGGA TTT TCCTGGCG TAACCAAGAAGTTGA SDY_2486 2287311 - 2288528 + | aminotransferase AlaT TERM 2584 2288538 - 2288564 + F 86 -13.8 -3.28791 | CTGTAATCTTAATTT CACTGCCGGA GATTGCA TCCGGCAGTG TTATCCCGCCACAAT TERM 2585 2289120 - 2289093 - g 95 -10.6 -4.56597 | gap 1 TCTTGCTGGCAAAAA CGCGACTGGAAGC GAC GCTTGCAG-CGCG TCGCAGCCAGGAGAT SDY_2487 2288612 - 2289211 + | hypothetical protein TERM 2586 2289219 - 2289266 + T 74 -10.6 -3.28712 | gap 1, opp_overlap 2289215 2289244 CGCTGTAAGCAGCCG GAGTCTG-CGTCGCATCAGGC AATAACC GCCGGATGCGACATCAGCCTC TTGTCAAAACGGAAA yfbS 2291102 - 2289270 - | putative transport protein TERM 2587 2291169 - 2291152 - R 100 -9.8 -5.24129 | TTCTGCCATAAAAAA GCCCCG ACGAGA CGGGGC TAAATCATGATCAGG yfbT 2291839 - 2291189 - | putative phosphatase TERM 2588 2291465 - 2291484 + g 72 -6.4 -4.3739 | gap 1, opp_overlap 2291459, overlap 2291469 GGTCACAAACACCTC TGGCGCGGG AAG CCC-CGCTA TTTTATGGCGCGCTC TERM 2589 2291469 - 2291482 + g 76 -9.5 -3.79419 | overlap 2291465 ACAAACACCTCTGGC GCGGG AAGC CCCGC TATTTTATGGCGCGC SDY_2490 2292344 - 2291850 - | hypothetical protein TERM 2590 2292383 - 2292401 + r 74 -6 -4.55689 | opp_overlap 2292383 TACGGTGAAAAAAAA GAAGGC TGAGTAT GCCTTC TTTTATATGCGTAAT TERM 2591 2292401 - 2292383 - R 89 -6 -5.76949 | opp_overlap 2292383 TACGGTGAAAAAAAA GAAGGC TGAGTAT GCCTTC TTTTATATGCGTAAT SDY_2491 2292882 - 2292427 - | hypothetical protein ackA 2293220 - 2294422 + | acetate kinase TERM 2592 2294426 - 2294453 + F 100 -16.4 -4.36914 | gap 1, overlap 2294428 CTGACTGCCTGATTT CA-CACCGCCAGC TCA GCTGGCGGTGCTG TTTTGTAACCCGCCA TERM 2593 2294428 - 2294450 + F 100 -19.2 -2.8733 | overlap 2294426 GACTGCCTGATTTCA CACCGCCAGC TCA GCTGGCGGTG CTGTTTTGTAACCCG TERM 2594 2295468 - 2295483 + G 78 -9 -3.96148 | CAAACGTGCTTTCGC TACCGG CCTG CCGGTA TTTATGGTGAACACC pta 2294497 - 2296641 + | phosphate acetyltransferase TERM 2595 2296653 - 2296673 + F 79 -12.6 -2.87132 | GTAACCTCGTCATCA TCCGCAGC TTTGC GCTGCGGA TATCTGAACCGGAAA TERM 2596 2296682 - 2296704 + F 100 -15 -5.64304 | CTGCGGATATCTGAA CCGGAAATAG TCA CTATTTCCGG TTTTTTATTCTCTTA TERM 2597 2297654 - 2297673 + G 74 -8.6 -3.87149 | overlap 2297626 TTCGTGAAAAGCAGG CGGATGTT GAAC AACGTCCG TTTACCTTTGGTGAC yfcC 2296831 - 2298351 + | hypothetical protein TERM 2598 2298361 - 2298378 + T 100 -12.7 -5.32944 | opp_overlap 2298356 2298363 CACTAAAAATGTTAA GAGCCGC AATT GCGGCTC TTTTTTCATTCTGCC TERM 2599 2298376 - 2298363 - T 71 -9.5 -3.17553 | opp_overlap 2298361, overlap 2298356 CTAAAAATGTTAAGA GCCGC AATT GCGGC TCTTTTTTCATTCTG SDY_2495 2298926 - 2298384 - | putative regulator TERM 2600 2298472 - 2298490 + g 82 -9.6 -4.16016 | opp_overlap 2298471 GAGTCTGGAGTGAAC TCATCGCA GCG TGCGGTGA TTTCTTCCGGCGTCA yfcE 2299538 - 2298984 - | phosphodiesterase SDY_2497 2299911 - 2299591 - | hypothetical protein TERM 2601 2299927 - 2299942 + r 86 -9 -4.42386 | CTAGGCCTGAATCTG TCGTGC ACGC GCACGA TTTTCTAAATCAAGC yfcF 2300235 - 2299912 - | hypothetical protein TERM 2602 2300211 - 2300198 - G 79 -2.3 -5.27923 | TAAGGGGAGAAAAAA TGGGC ATCT GACCA AAGCGTGATAGCGGG yfcG 2300371 - 2301018 + | putative S-transferase folX 2301075 - 2301437 + | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase TERM 2603 2301915 - 2301875 - g 93 -12.6 -3.93583 | gap 1, overlap 2301860 GAATTTACCCATAAA CTCTGCGCCC-GCTGGGAA GAAA TTGCCTGCCGGGCGCAAAG TGACAAAACGCGAGT TERM 2604 2301950 - 2301924 - g 70 -4.3 -4.51196 | CGCAAAGTGACAAAA CGCGAGTATGC CTGCT GCGTACCGGCG TAGTGCTGGCACCGG SDY_2501 2301458 - 2302351 + | putative sugar nucleotide epimerase yfcI 2303019 - 2302399 - | hypothetical protein TERM 2605 2302627 - 2302609 - G 70 -5.9 -4.25056 | opp_overlap 2302622, overlap 2302613 TATCTCACCAATAAA TGCACGG AAACG CCGGGCA TCTCCCGTTTGTAAT SDY_2503 2303391 - 2303573 + | iso-IS1 ORF2 SDY_2504 2303570 - 2303785 + | iso-IS1 ORF2 TERM 2606 2304236 - 2304210 - T 71 -7.3 -4.08064 | gap 1, overlap 2304212 AATTCCCCTTGAAAA TACTCCGGCAGC GTTA GCCACCGGAG-A GGCAATTATTTCAGC TERM 2607 2304235 - 2304212 - T 88 -12.4 -3.63744 | overlap 2304210 TTCCCCTTGAAAATA CTCCGGCAGC GTTA GCCACCGGAG AGGCAATTATTTCAG hisP 2305015 - 2304242 - | histidine/lysine/arginine/ornithine transporter subunit hisM 2305739 - 2305023 - | histidine transport, membrane protein M TERM 2608 2305048 - 2305061 + g 72 -4.5 -4.64766 | opp_overlap 2305039, overlap 2305049 GAAGAAGGTTTCACA TGCTG CAAC CAGCG TTTTTCCGCTCTGCG hisQ 2306422 - 2305736 - | histidine transport system permease protein TERM 2609 2306458 - 2306492 + r 70 -4.9 -4.42062 | gap 1, overlap 2306438 2306459 TGGTGAATTACCGCC TCTTGTCTCCCTCCGG TTAC CCGAAGGGAG-CGGGC TTTCTTTCACCGATG hisJ 2307294 - 2306512 - | histidine-binding periplasmic protein of high-affinity histidine transport system TERM 2610 2307154 - 2307166 + g 93 -6.3 -5.27477 | opp_overlap 2307153 ATCGAAGCCAACCAG TTCAC CTT GTGAA TTTTTTGATTCAAAT argT 2308297 - 2307515 - | lysine-, arginine-, ornithine-binding periplasmic protein TERM 2611 2307641 - 2307664 + g 100 -5.2 -5.63645 | ATCTTTACGTAGCCC TACACCGGTG CCAT CACCGAAGTA TTTTTTGTCTTTTAC TERM 2612 2308553 - 2308535 - R 95 -13.2 -4.07687 | overlap 2308546 ATCGCGGTTGCAAAA TTGCCCTG AAA CAGGGCAA CAGCGGAGTTATGCG ubiX 2309131 - 2308562 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 2613 2309213 - 2309195 - R 78 -12.4 -2.53263 | GGGAGTTGCAAGTCA GGGTGCCA GAT CGGCACCC TGAGCGAAGGCATCA purF 2310743 - 2309226 - | amidophosphoribosyltransferase TERM 2614 2309645 - 2309658 + g 73 -3.7 -4.82901 | GGACGATGGAGTCGT CGACC AGCA GGACG TTTTTATCGCGGAAC TERM 2615 2310514 - 2310480 - G 72 -7.2 -4.28774 | gap 2 GGAGTTAACGTAAAA CGGCTG-C-GCTTCAG AGGCG CTGGAGCTGCCAGCCG TGGGGTAACGCACAT cvpA 2311268 - 2310780 - | colicin V production protein TERM 2616 2311396 - 2311371 - R 100 -9.8 -5.1356 | GCGCATCAATAAAAA TGGCGCTGAA AAAATA TTCAACGCCA TCGACTTTTTATGCC TERM 2617 2311498 - 2311451 - R 75 -10 -3.53811 | opp_overlap 2311443 2311431 2311430, overlap 2311495 CGGATGCGGCGTAAA CGCCTTATCCGACCTACG GTTCTACCCCTG CGTAGGCCTGATAAGACG CACCAGCGTCGCATC dedD 2312371 - 2311709 - | hypothetical protein TERM 2618 2311944 - 2311963 + g 79 -4.2 -5.06414 | AGTTGCACAACATAG GCTTTACC CGTC GGTGCAGC TTTTTCTTCCACGAC folC 2313629 - 2312361 - | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase TERM 2619 2313028 - 2313041 + g 70 -3.7 -4.65895 | opp_overlap 2313013 GGCATTTCCGGCTCA CCGAC AATT GCCGG TTTTTCGCTGCGAAA TERM 2620 2313605 - 2313581 - G 77 -6.9 -4.56978 | TTTCCAAATAAGAAA GCCACGAAGCC AGA GGCGACGAGGC TTGAGGAGTGCGTTT TERM 2621 2313666 - 2313688 + r 93 -14.8 -3.45054 | opp_overlap 2313666 GTGAGAATAGCAAAA GGGCAGAGCC AGT GGCCCTGCCC TTATCAGTTATCAGG TERM 2622 2313688 - 2313666 - R 100 -17 -4.46656 | opp_overlap 2313666 GTGAGAATAGCAAAA GGGCAGAGCC AGT GGCCCTGCCC TTATCAGTTATCAGG accD 2314613 - 2313699 - | acetyl-CoA carboxylase subunit beta TERM 2623 2313871 - 2313893 + g 74 -6.3 -4.56775 | gap 1, opp_overlap 2313871 TCGATCAGGAATTCA CTG-CGCTGG AATC CTAGCGGCAG TTTTTCGCGAACGGT TERM 2624 2314635 - 2314649 + r 71 -3.5 -4.78848 | CCTTTCTGTCTGAAC CTGGT TCGAT GCCAG TTTTATCTTTGGGGA TERM 2625 2314757 - 2314745 - R 77 -3.3 -5.24531 | ACTTTGGATAAAAAA GTGGT CGA ACCGC AGAGTTACTTTTTAT dedA 2315428 - 2314769 - | hypothetical protein TERM 2626 2315445 - 2315501 + r 80 -9.5 -3.90241 | overlap 2315456 2315496 TTTGCCTATGCCTTG TACTCGTCATCTTTCAGGCTGTAACTA CGT TGGCTACAGCCTGAAATGTTCCGAGCA TTATTCTCGTTAGTC TERM 2627 2315456 - 2315490 + r 93 -15.2 -3.03338 | overlap 2315445 CTTGTACTCGTCATC TTTCAGGCTGTAACTA CGT TGGCTACAGCCTGAAA TGTTCCGAGCATTAT truA 2316323 - 2315511 - | tRNA pseudouridine synthase A TERM 2628 2316075 - 2316100 + g 93 -12.5 -3.92542 | opp_overlap 2316072 ATTTACACCCAACGT CCACGCAGCGT CTTT GCGCTGCGCGG TTGTTTCGAAATGCA usg 2317336 - 2316323 - | putative semialdehyde dehydrogenase TERM 2629 2317389 - 2317362 - R 73 -7.7 -4.04579 | TCCAGAAATAGCAAA GCTCCCTGCCA ATGTTA CAGCAGAGAGC ATGAAGAAGAGATTA pdxB 2318538 - 2317402 - | erythronate-4-phosphate dehyrogenase TERM 2630 2317681 - 2317695 + g 72 -7.8 -3.86897 | GGGCAGTAATGTATC CAGCGC AAC GTGCTG TTTATGCCCAATAAA TERM 2631 2318068 - 2318031 - G 82 -12 -3.48063 | overlap 2318033 TATGGAAAGTCAGAA TATCCGCGCGCTGGAC TAACTC ATCCAGCGAGCGGAAA TCACCCTCATCCCCA TERM 2632 2318066 - 2318033 - G 100 -14.6 -3.30797 | overlap 2318031 TGGAAAGTCAGAATA TCCGCGCGCTGGAC TAACTC ATCCAGCGAGCGGA AATCACCCTCATCCC div 2318637 - 2319632 + | flagella biosynthesis regulator SDY_2521 2320081 - 2319629 - | hypothetical protein TERM 2633 2320149 - 2320133 - R 76 -5.1 -4.85599 | TGTAGGTGAGAAAAA CCGCA AAAGCGA TGCGG AAGAGCGAAAAATTG TERM 2634 2320370 - 2320387 + r 86 -11.3 -3.67976 | opp_overlap 2320370 CAATGATGTGAAAAA GGGAACC ATCG GGTTCCC TTTGGCGTTAGTGCC TERM 2635 2320387 - 2320370 - R 95 -11.3 -4.64598 | opp_overlap 2320370 CAATGATGTGAAAAA GGGAACC ATCG GGTTCCC TTTGGCGTTAGTGCC TERM 2636 2320457 - 2320424 - R 71 -9.5 -3.29511 | opp_overlap 2320416 2320415 2320434, overlap 2320425 CGCATTGGCGCATAA CGTCGGATGCGACGC TGGC GCGTCTTATCCGACC TACTCCGGCCTACTG TERM 2637 2320456 - 2320425 - R 80 -13 -2.57564 | opp_overlap 2320416 2320415 2320434, overlap 2320424 GCATTGGCGCATAAC GTCGGATGCGACGC TGGC GCGTCTTATCCGAC CTACTCCGGCCTACT fabB 2321697 - 2320477 - | 3-oxoacyl-(acyl carrier protein) synthase I mnmC 2321856 - 2323862 + | 5-methylaminomethyl-2-thiouridine methyltransferase SDY_2524 2324261 - 2323983 - | hypothetical protein SDY_2525 2324843 - 2324295 - | putative transporting ATPase TERM 2638 2325176 - 2325158 - R 79 -8.8 -4.09685 | overlap 2325144 2325159 2325161 GGCCAGCGCGTAAAA CGATCCGG CTG CCGGACCA AAGAATCCGTCATAA TERM 2639 2325175 - 2325159 - R 70 -10.1 -3.05597 | overlap 2325144 2325158 2325161 GCCAGCGCGTAAAAC GATCCGG CTG CCGGACC AAAGAATCCGTCATA TERM 2640 2325210 - 2325195 - R 73 -4.6 -4.84017 | AATCCGTCATAAAAA CCGACG CAGC CACCGG CAATTAACGCGAAGG mepA 2326476 - 2325652 - | penicillin-insensitive murein endopeptidase TERM 2641 2325677 - 2325721 + g 85 -8.5 -4.45068 | TGCTCATCCAGTAGC GCCTGGCAGGAAGGCGGCAAC GGA GGTGGTGTCTTCTTCTCAGGC TTTGTTGTTCCCGGT TERM 2642 2326382 - 2326397 + g 72 -4.6 -4.61482 | ATCGATTGTGCGCTA CCCGGC ACAG GTTGGG TTATTTTTTGCCACG TERM 2643 2326453 - 2326466 + g 76 -3.7 -4.95211 | GGCAAGCAGGGCCAG CAGCG CAAT CGCGG TTTTGTTCATTTTTT aroC 2327565 - 2326480 - | chorismate synthase TERM 2644 2327122 - 2327136 + g 77 -2.8 -5.03314 | opp_overlap 2327122, overlap 2327124 GATTTCAATACCAAA TTTCTC GGC GAGATA TTTTTTGGCAATCGC yfcB 2328865 - 2327600 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase SDY_2529 2328698 - 2329249 + | hypothetical protein TERM 2645 2329408 - 2329384 - TR 100 -7.9 -5.74122 | opp_overlap 2329384 2329396 TATGAGAGAAAAAAA GCCTGGTAA ACTCCTG TCACCAGGC TGGTATGTGCTAGAA SDY_2531 2329927 - 2329418 - | hypothetical protein TERM 2646 2329867 - 2329839 - G 72 -10.4 -3.41602 | GGCACGGTAGCAGAA TGGCTGATAACA CGTAC CGTTACCAGCCA CGGGCACCCGCTGAC SDY_2532 2330797 - 2330258 - | putative fimbrial-like protein SDY_2533 2331282 - 2330794 - | hypothetical protein TERM 2647 2330857 - 2330833 - G 70 -6.5 -4.19238 | gap 1, opp_overlap 2330826 2330832 2330850 GGCGTAAGCGGAAAA CGAT-CCGTC ATTCAG GACGGCATCG CTCGCTTTTACCGGC SDY_2534 2331785 - 2331279 - | putative fimbrial protein yfcS 2332550 - 2331801 - | putative chaperone SDY_2536 2333172 - 2332573 - | hypothetical protein SDY_2537 2334881 - 2333151 - | putative fimbrial usher TERM 2648 2334983 - 2334995 + r 72 -4.7 -4.56702 | AAATATCGTATTCTT CCGCC AGC GGCTG TTTATTTAGTTGAAC TERM 2649 2335285 - 2335262 - R 100 -13.2 -4.67011 | opp_overlap 2335259 AATTCCATTTAAAAA CCCCATAGCC CGAA AGCTATGGGG ATATCACTTAGAGAT SDY_2538 2335856 - 2335368 - | putative fimbrial-like protein TERM 2650 2335826 - 2335837 + g 77 -5.8 -4.59853 | CCATTACCATTGTTG CAGC AATA GCTG TTTTTACAAACTTAC TERM 2651 2336144 - 2336132 - R 79 -2.7 -5.3472 | AAAAAACAAATAAAA TGCTT AGA AAACA TCTTTTACATAATTA insB 2336619 - 2336242 - | IS1 ORF2 insA 2336939 - 2336664 - | IS1 ORF1 TERM 2652 2337289 - 2337251 - R 100 -11.9 -4.63928 | opp_overlap 2337257, overlap 2337257 ATACTATTGCAAAAA GACAAATGCCCGATGTA CAGCT TACATCGGGCATTTTTT CAAACAAATCAAATA TERM 2653 2337283 - 2337257 - R 100 -15.3 -4.55887 | opp_overlap 2337257, overlap 2337251 TTGCAAAAAGACAAA TGCCCGATGTA CAGCT TACATCGGGCA TTTTTTCAAACAAAT TERM 2654 2337257 - 2337283 + r 100 -15.3 -5.00884 | opp_overlap 2337251 2337257 TTGCAAAAAGACAAA TGCCCGATGTA CAGCT TACATCGGGCA TTTTTTCAAACAAAT SDY_2541 2337783 - 2337298 - | phosphohistidine phosphatase fadJ 2340130 - 2337986 - | multifunctional fatty acid oxidation complex subunit alpha TERM 2655 2338333 - 2338345 + g 100 -4.8 -5.46698 | overlap 2338294 TGAGCGGGTAAATGG CAGG ATCGA CCTG TTTTTTGCTTTTACG TERM 2656 2338679 - 2338691 + g 70 -6.9 -4.13963 | opp_overlap 2338678 2338679, overlap 2338668 GTCACGCACGACAAT GGGCG TTT TGCCC TGTTTTTTCGCCAGT fadI 2341440 - 2340130 - | 3-ketoacyl-CoA thiolase TERM 2657 2340215 - 2340196 - G 74 -7.8 -4.10552 | opp_overlap 2340198, overlap 2340197 2340200 GGTCACTAAACCAAA TCCACCGC CGCG GCGGCGAA GTTCATGCAATGTCT TERM 2658 2340598 - 2340623 + g 81 -13.3 -2.73875 | gap 1, overlap 2340595 2340612 AGTCATCAGGATCAC CGCCGCTGCGCC ATC GGT-CAGCGGCG TACTGTTCGCCGCCG TERM 2659 2341603 - 2341577 - R 100 -15.9 -5.26907 | GAAGAGAAAAGAAAA CGCCCCTGCCA GCAAT TGACAGGGGCG TACGTACCCGAGAGG SDY_2544 2341929 - 2341621 - | hypothetical protein fadL 2342270 - 2343616 + | long-chain fatty acid outer membrane transporter TERM 2660 2343638 - 2343658 + T 82 -11.1 -3.64822 | opp_overlap 2343638 GTTCGCCTGGATAAA GCCACCTGC TAT GCAGGTGAC TTTAACTCCCCCACT TERM 2661 2343658 - 2343638 - T 95 -13.3 -3.85698 | opp_overlap 2343638 GTTCGCCTGGATAAA GCCACCTGC TAT GCAGGTGAC TTTAACTCCCCCACT SDY_2546 2343987 - 2343748 - | hypothetical protein SDY_2547 2344168 - 2344452 + | iso-IS1 ORF2 insB 2344933 - 2344556 - | IS1 ORF2 insA 2345253 - 2344978 - | IS1 ORF1 TERM 2662 2346181 - 2346171 - R 73 -4 -4.73682 | opp_overlap 2346171 CTTGAGAATACAAAA GAAA TAG TTTC TACTTTATTCGGTAA TERM 2663 2346521 - 2346482 - R 77 -10.3 -3.3785 | opp_overlap 2346492, overlap 2346492 GTAATTGAGGGATAA CAACAAAAAAGGTGAGT ATTGCG ACTCACCTTTTTTATTT GTTTCTTATTCAGAA TERM 2664 2346511 - 2346492 - R 100 -7.9 -5.68489 | opp_overlap 2346492, overlap 2346482 GATAACAACAAAAAA GGTGAGT ATTGCG ACTCACC TTTTTTATTTGTTTC TERM 2665 2346492 - 2346511 + r 100 -7.9 -5.85425 | opp_overlap 2346492 2346482 GATAACAACAAAAAA GGTGAGT ATTGCG ACTCACC TTTTTTATTTGTTTC vacJ 2347282 - 2346527 - | lipoprotein precursor yfdC 2347575 - 2348507 + | putative transport TERM 2666 2348515 - 2348498 - T 77 -3.3 -5.1286 | GAAAAATGATAAAAA CCCGGCA TAAA TGGCGAG GGTTTAAGCAATCGA insB 2349501 - 2349124 - | IS1 ORF2 insA 2349821 - 2349546 - | IS1 ORF1 SDY_2555 2350792 - 2351187 + | iso-IS1 ORF2 TERM 2667 2353862 - 2353875 + G 82 -8.1 -4.58395 | AATACCCGGAATGTG GTCGC CAGG GCGAC TTTTTGCACAATCCG SDY_2558 2353098 - 2354531 + | sucrose hydrolase SDY_2559 2355534 - 2354539 - | sucrose operon repressor SDY_2560 2355777 - 2355995 + | D-serine permease dsdA 2356013 - 2357341 + | D-serine dehydratase emrY 2358987 - 2357449 - | multidrug resistance protein Y TERM 2668 2358558 - 2358569 + g 82 -2.2 -5.31877 | TTGACCATAATGCCA GAGC AAAT GTTC TTTTTTCTGGTGGAT emrK 2360150 - 2358987 - | multidrug resistance protein K TERM 2669 2359642 - 2359658 + g 93 -12.3 -3.89131 | TTATAAGCCTGGATA GCGGCAT TCA ATGCCGC TTTGCTACTTATTAA TERM 2670 2359772 - 2359799 + g 83 -10 -4.1337 | gap 1, opp_overlap 2359772, overlap 2359775 ATTGTTGATACTGAA TAC-GTGCTGAAG CGA CTTCGGCACTGTA TTGTTTATCCTGTAA TERM 2671 2359775 - 2359795 + g 80 -11.9 -3.39301 | opp_overlap 2359772, overlap 2359772 GTTGATACTGAATAC GTGCTGAAG CGA CTTCGGCAC TGTATTGTTTATCCT SDY_2565 2361236 - 2361631 + | iso-IS1 ORF2 TERM 2672 2362258 - 2362233 - T 74 -5.5 -4.60924 | overlap 2362222 TAAATCTTTTAAAAA GAGCGTTAAAT ATCA AATTAACACTC CGGGAATACGCCGAT SDY_2567 2363587 - 2363192 - | iso-IS1 ORF2 insA 2364986 - 2364711 - | IS1 ORF1 TERM 2673 2365204 - 2365230 + r 79 -10.9 -3.34517 | opp_overlap 2365201 2365202, overlap 2365202 AATGACTAAATAGCG GCTCCCACAAT GTTCA AATGTGGGAGC TATTTACCAGCACAT yfdE 2366437 - 2365253 - | hypothetical protein TERM 2674 2366443 - 2366419 - G 83 -6.5 -5.0133 | gap 1, opp_overlap 2366419 2366418 TATGCCTCGAAAAAA GCCGAAG-GT GAAAAG ACACTTCGGC ATTTATGTAAAATCA SDY_2570 2367416 - 2366472 - | putative transporter YfdV SDY_2571 2369180 - 2367486 - | putative oxalyl-CoA decarboxylase TERM 2675 2368509 - 2368482 - G 76 -7.9 -4.16842 | gap 1, opp_overlap 2368490 GGCACTTTCAATAAA TTCACGAAGCTG TTCGT CAGCTT-GTGAA TACGCCGCGCCTTTG TERM 2676 2369002 - 2368987 - G 77 -6.1 -4.63218 | overlap 2368988 2368989 TTTTGGGTAAGAAAA CCGCT TGCCGC AGCGG CATAGCCTGCCGACT SDY_2572 2370484 - 2369234 - | formyl-coenzyme A transferase TERM 2677 2370941 - 2370905 - R 95 -11.9 -3.92542 | opp_overlap 2370904 2370903 GCGAGCGCCAAATAA TTTTATGACCACAAC CTGTCGT ATTGTGGTCATAAAA AATTGTCGGCTGGAG SDY_2573 2371628 - 2370996 - | hypothetical protein TERM 2678 2371978 - 2371992 + G 72 -4.3 -4.59069 | GTCTCTATTATGGCA TGCAA TGTTT TTGCA TTTTCTAATTCTGGT SDY_2574 2371924 - 2372199 + | hypothetical protein SDY_2575 2372518 - 2372276 - | hypothetical protein ddg 2372871 - 2373791 + | lipid A biosynthesis palmitoleoyl acyltransferase TERM 2679 2373852 - 2373825 - T 82 -11.4 -3.48593 | opp_overlap 2373825 TACCTCCTCACATAA GCCATAATAACC TCAT GGTTTTTATGGC TTTTTTCTTAAGGTT TERM 2680 2373825 - 2373852 + T 100 -11.4 -5.4756 | opp_overlap 2373825 TACCTCCTCACATAA GCCATAATAACC TCAT GGTTTTTATGGC TTTTTTCTTAAGGTT TERM 2681 2374222 - 2374279 + T 87 -14.3 -2.80512 | opp_overlap 2374226 2374241, overlap 2374241 CTGATGATCTAAAAG CAAACTGTGCAATGAAAAACAGGAGCC ATCA GGCTCCTGTTTTTCATTTCTGAGGTCG GTGTTTATTCCGCGT TERM 2682 2374275 - 2374226 - T 100 -18.1 -4.21922 | opp_overlap 2374222 2374241, overlap 2374241 TGATCTAAAAGCAAA CTGTGCAATGAAAAACAGGAGCC ATCA GGCTCCTGTTTTTCATTTCTGAG GTCGGTGTTTATTCC TERM 2683 2374260 - 2374241 - T 100 -13.6 -4.8622 | opp_overlap 2374241 2374222, overlap 2374226 CTGTGCAATGAAAAA CAGGAGCC ATCA GGCTCCTG TTTTTCATTTCTGAG TERM 2684 2374241 - 2374260 + T 100 -13.6 -5.04601 | opp_overlap 2374226 2374241, overlap 2374222 CTGTGCAATGAAAAA CAGGAGCC ATCA GGCTCCTG TTTTTCATTTCTGAG SDY_2577 2375522 - 2374284 - | aminotransferase TERM 2685 2374730 - 2374741 + g 77 -5.8 -4.63218 | TAATACGTGCCAGGG CGCT GACC AGCG TTTTGTTGCCAACCA TERM 2686 2375567 - 2375584 + r 71 -6.9 -4.11394 | overlap 2375569 2375580 ACCGTCCGAGCGACG CTGCCAC GATG GTGGCTG TTTTGAAAATAGCCT SDY_2578 2375847 - 2375602 - | hypothetical protein TERM 2687 2376506 - 2376493 - g 70 -3.7 -4.66833 | overlap 2376495 2376496 GTTGAAGGCGAAAAA GAGGC CAGC GCCGC GCGGCAGGCCAAGCT TERM 2688 2376516 - 2376495 - g 72 -7.9 -3.94933 | gap 1, overlap 2376493 2376496 TGAAGGCGAAAAAGA GGCCAG-CGC CGC GCGGCAGGCC AAGCTGGCGCTGGAT TERM 2689 2376767 - 2376746 - g 81 -6.7 -4.7078 | TGAATTACGGAAAAA TCATCATTA AAAA CAATGATGA AGCCCACCGCACACC SDY_2579 2375899 - 2377596 + | putative sensor protein TERM 2690 2378830 - 2378846 + T 82 -7.9 -4.60797 | opp_overlap 2378829 ATGCCGCCGAGCAAT TCGCAGC CGC GCGGCGA TTTTCTCTATCACAG TERM 2691 2380498 - 2380478 - T 76 -8.9 -3.66018 | opp_overlap 2380484 2380485 2380488 2380491, overlap 2380482 TTATCACGGGAATAA GCCAGCTGC GCG GCAGCCTGC GCCTGTTGTTTTTGG TERM 2692 2381419 - 2381457 + T 72 -10.3 -2.88054 | gap 1, opp_overlap 2381416, overlap 2381418 GTCATTAAATAGGGT GCCGGTGCCAATCAGCGC CAGC GAGCTT-TTGGCATCGGC CTTTGCGTTCTGGCG SDY_2583 2382648 - 2381611 - | exoaminopeptidase SDY_2584 2383562 - 2382648 - | putative peptidase TERM 2693 2383094 - 2383053 - G 100 -15.4 -3.22298 | gap 2 GCCATTCACCAGCAA GGTGCGCGTCATATCAGAGC AGTA GCCCTGATA-GA-GCGCACC GAAATCGAGAGTGAC SDY_2585 2384824 - 2383577 - | putative transport protein TERM 2694 2384251 - 2384279 + g 74 -11.1 -3.25088 | opp_overlap 2384254 2384259, overlap 2384252 2384254 2384259 TGGTTTTGTACGCTA ACAGGAAATCCAG TAA CTGGATTTTCTGG TTCATCCATTTCACA TERM 2695 2384252 - 2384278 + g 90 -14.6 -2.54732 | opp_overlap 2384254 2384259, overlap 2384251 2384254 2384259 GGTTTTGTACGCTAA CAGGAAATCCAG TAA CTGGATTTTCTG GTTCATCCATTTCAC TERM 2696 2384254 - 2384276 + g 73 -11.4 -2.80784 | opp_overlap 2384254 2384259, overlap 2384252 2384251 2384259 TTTTGTACGCTAACA GGAAATCCAG TAA CTGGATTTTC TGGTTCATCCATTTC TERM 2697 2384271 - 2384259 - G 72 -7.7 -3.93038 | opp_overlap 2384259 2384254 2384252 2384251, overlap 2384254 TACGCTAACAGGAAA TCCAG TAA CTGGA TTTTCTGGTTCATCC TERM 2698 2384259 - 2384271 + g 82 -7.7 -4.56607 | opp_overlap 2384254 2384259, overlap 2384254 2384252 2384251 TACGCTAACAGGAAA TCCAG TAA CTGGA TTTTCTGGTTCATCC SDY_2586 2385172 - 2384846 - | putative PTS system enzyme IIB component TERM 2699 2385378 - 2385353 - R 72 -8.3 -3.70674 | overlap 2385351 2385354 2385356 GTATGATTTAAAAGA TTATCGGGAGA GTTA CCTCCCGATAT AACAGGAAGGATTTA TERM 2700 2385377 - 2385354 - R 77 -11.8 -2.81922 | overlap 2385353 2385351 2385356 TATGATTTAAAAGAT TATCGGGAGA GTTA CCTCCCGATA TAACAGGAAGGATTT TERM 2701 2385375 - 2385356 - R 70 -10 -2.95081 | overlap 2385354 2385353 2385351 TGATTTAAAAGATTA TCGGGAGA GTTA CCTCCCGA TATAACAGGAAGGAT glk 2386356 - 2385391 - | glucokinase TERM 2702 2386707 - 2386676 - R 78 -12.2 -2.66316 | opp_overlap 2386693, overlap 2386686 CTCGGTATTACAGTA GGGCGGATAAGGCG TTTA CGCCGCATCCGCCA ATAGTGCCAGATGCG SDY_2588 2387973 - 2386735 - | manganese transport protein MntH TERM 2703 2388004 - 2387989 - H 73 -7.6 -4.07568 | opp_overlap 2387989 CTTGTGCCTCTAAAA CATAGC CTTT GCTATG TTTCATGCTACGCCA SDY_2589 2388271 - 2388681 + | insertion sequence 2 OrfA protein SDY_2590 2388705 - 2389433 + | IS2 ORF2 SDY_2591 2389645 - 2389430 - | iso-IS1 ORF2 SDY_2592 2390020 - 2390292 + | hypothetical protein TERM 2704 2391013 - 2391034 + G 70 -7.3 -4.00782 | TGTCGTTGCAGCGCT GGTACTGAA TATG TTCAGCACC TTTATCGTGCTGTCG nupC 2390420 - 2391622 + | permease of transport system for 3 nucleosides TERM 2705 2391657 - 2391638 - f 100 -9.2 -5.05601 | opp_overlap 2391639, overlap 2391639 GACCATACATAAAAA GCCGGGGA TAAT TCCCCGGT TTTTTTACGCCTGTT TERM 2706 2391656 - 2391639 - f 88 -12.7 -3.62276 | opp_overlap 2391639, overlap 2391638 ACCATACATAAAAAG CCGGGGA TAAT TCCCCGG TTTTTTTACGCCTGT TERM 2707 2391639 - 2391656 + F 100 -12.7 -5.42862 | opp_overlap 2391639 2391638 ACCATACATAAAAAG CCGGGGA TAAT TCCCCGG TTTTTTTACGCCTGT TERM 2708 2393049 - 2393033 - f 80 -6.5 -4.74215 | AGATGATGAAGAAAA CGGGTAC CAG GTAACCG GCAATAAAGTCGTTT TERM 2709 2393965 - 2393946 - f 100 -11.4 -5.06505 | opp_overlap 2393946 AAGCAGAGACAAAAA CCCCCGCT TTGC AGCGAGGG TTTGAAATTTGGTGG TERM 2710 2393946 - 2393965 + F 76 -9.2 -3.73107 | opp_overlap 2393946 AAGCAGAGACAAAAA CCCCCGCT TTGC AGCGAGGG TTTGAAATTTGGTGG TERM 2711 2394391 - 2394379 - g 82 -9.1 -4.28762 | overlap 2394369 ACAACGTCACCAAAA CCTGG CGT CCAGG GTGGCAAAGCCCGAC yfeC 2394271 - 2394630 + | hypothetical protein TERM 2712 2394757 - 2394743 - g 71 -2.8 -4.87318 | overlap 2394735 TGGAAAACGGAAAAA TTTCCC GGC GTGAAA GGCGGTCGTGCCAGA yfeD 2394632 - 2395024 + | hypothetical protein TERM 2713 2395063 - 2395080 + T 70 -9.9 -2.94888 | overlap 2395061 2395076 AGGATCCCTGCTACG TTCAGGC TGTC GCCTGAA TCATTTCGGTGGGTT SDY_2598 2396272 - 2395064 - | putative virulence protein TERM 2714 2395639 - 2395652 + g 73 -3.8 -4.83615 | overlap 2395627 GTCGCTGAAGTCTCG CCAG CTTCTT CTGG TTTTTCTGAAAACTG TERM 2715 2395927 - 2395958 + g 95 -10.2 -4.65895 | gap 1 CGAGCTTAACGCCCT GCGGGTAGCGGAATG CAT CATTCTG-TCCCCGC TTTTTGAATCGGGGA TERM 2716 2395985 - 2395997 + g 71 -3.4 -4.82901 | GGGAAAAGCAGCCCG CTTC CGGAA GAAG TTTTTGTAAGCCCGC TERM 2717 2396765 - 2396720 - g 91 -11.7 -4.11216 | opp_overlap 2396733, overlap 2396721 GGGTCAGGTGGAAAA CCGCGCCTTATATCCCCGCCC TGAA GGACGGGGTTTTACGGCGCAC CGGATAAATAAAAAA TERM 2718 2396764 - 2396721 - g 95 -15.2 -3.06515 | opp_overlap 2396733, overlap 2396720 GGTCAGGTGGAAAAC CGCGCCTTATATCCCCGCCC TGAA GGACGGGGTTTTACGGCGCA CCGGATAAATAAAAA TERM 2719 2396733 - 2396752 + G 88 -10.6 -4.07568 | opp_overlap 2396721 2396720 AACCGCGCCTTATAT CCCCGCCC TGAA GGACGGGG TTTTACGGCGCACCG TERM 2720 2396781 - 2396803 + G 77 -6.9 -4.51238 | opp_overlap 2396781, overlap 2396783 CGGATAAATAAAAAA CAGCAGGGG TATTT CTCCTGCCG TTTATCTTTTATGCG TERM 2721 2396803 - 2396781 - g 100 -6.9 -5.72622 | opp_overlap 2396781 2396783 CGGATAAATAAAAAA CAGCAGGGG TATTT CTCCTGCCG TTTATCTTTTATGCG SDY_2599 2396280 - 2396822 + | putative transposase TnA gltX 2398238 - 2396823 - | glutamyl-tRNA synthetase TERM 2722 2398781 - 2398795 + H 100 -8.5 -5.24989 | opp_overlap 2398780 2398781 CCACCAATGTAAAAG GCGCC CTAAA GGCGC TTTTTTGCTATCTGC TERM 2723 2398845 - 2398823 - H 77 -10.6 -3.43773 | overlap 2398821 2398824 TGCGATACTCAAAGA TTCGAACCTG CAG CAGGTTCGAG TTGAGCGCAGCGAAA TERM 2724 2398844 - 2398824 - H 83 -14.1 -2.65942 | overlap 2398823 2398821 GCGATACTCAAAGAT TCGAACCTG CAG CAGGTTCGA GTTGAGCGCAGCGAA TERM 2725 2398929 - 2398959 + H 75 -11.3 -2.94194 | opp_overlap 2398929 2398928 2398937, overlap 2398937 GCACGACCCACCAAT GTAAAAAAGCGCC CTAAA GGTGCTTTTTTGC TATCTGCGATTTGTA TERM 2726 2398937 - 2398951 + H 81 -4.9 -5.24989 | opp_overlap 2398937 2398929 2398928, overlap 2398929 CACCAATGTAAAAAA GCGCC CTAAA GGTGC TTTTTTGCTATCTGC TERM 2727 2398951 - 2398937 - H 77 -3.4 -5.17576 | opp_overlap 2398929 2398937, overlap 2398929 2398928 CACCAATGTAAAAAA GCGCCC TAA AGGTGC TTTTTTGCTATCTGC flxA 2399046 - 2399387 + | hypothetical protein TERM 2728 2400612 - 2400627 + G 76 -9 -3.72453 | TTTGTGGGTAATGTG CAGCAC CTTC GTGCTG TTTCCGATTCTTGGT yfeH 2400394 - 2401392 + | putative cytochrome oxidase SDY_2607 2401607 - 2401389 - | hypothetical protein ligA 2403624 - 2401609 - | NAD-dependent DNA ligase LigA TERM 2729 2403663 - 2403647 - R 93 -10.8 -4.67904 | CATCAATGCTAAAAA CCCCCG ACAAG CGGGGG TTCGAAGAGGAGTTA zipA 2404693 - 2403695 - | cell division protein ZipA TERM 2730 2404794 - 2404828 + H 72 -2.8 -5.02476 | CACTATTAACTTTCA CAGCACAAAGATAGAT GAA ATCGTGCTTTTTGCTG TTTTTTCGAACATAT TERM 2731 2404947 - 2404957 + G 71 -2.4 -4.98616 | TCATTCACATCTGCC CCAC GCA GCGG TTTTTACTATTTTGC TERM 2732 2405226 - 2405236 + G 72 -6.8 -4.20516 | AACTGGATTGCCGCT CCGT TTA ACGG TTTATTGGCTGAACA cysZ 2404923 - 2405684 + | putative sulfate transport protein CysZ TERM 2733 2405743 - 2405724 - f 77 -10.6 -3.34398 | opp_overlap 2405724, overlap 2405722 CGTTTGTGTGAAACA GGGGTGGC TTAT GCCGCCCC TTATTCCATCTTGCA TERM 2734 2405724 - 2405743 + F 93 -12.8 -3.7347 | opp_overlap 2405724 2405722 CGTTTGTGTGAAACA GGGGTGGC TTAT GCCGCCCC TTATTCCATCTTGCA TERM 2735 2406349 - 2406335 - g 82 -3.4 -5.19261 | overlap 2406336 AAATTCACGAAAAAA CCACCG GTC CGGAGA TCTGGGAAGGTACCG cysK 2405869 - 2406840 + | cysteine synthase A TERM 2736 2406884 - 2406869 - f 100 -9 -5.08011 | opp_overlap 2406869, overlap 2406860 AAAATGCGTAAAAAA GCACCT TTTT AGGTGC TTTTTTGTGGCCTGC TERM 2737 2406869 - 2406884 + F 100 -9 -5.26316 | opp_overlap 2406869 2406860 AAAATGCGTAAAAAA GCACCT TTTT AGGTGC TTTTTTGTGGCCTGC ptsH 2407224 - 2407481 + | phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) TERM 2738 2407843 - 2407814 - g 72 -6.5 -4.36903 | gap 1, opp_overlap 2407814 2407814, overlap 2407816 CTGATTAAAGATAAA CACATGA-CAGCTG ACG CAGCTGCTCATGAA GTTATCGAAGGTCAG TERM 2739 2407841 - 2407816 - g 88 -11.3 -3.78193 | gap 1, opp_overlap 2407814 2407814, overlap 2407814 GATTAAAGATAAACA CATGA-CAGCTG ACG CAGCTGCTCATG AAGTTATCGAAGGTC ptsI 2407526 - 2409253 + | phosphoenolpyruvate-protein phosphotransferase crr 2409294 - 2409803 + | glucose-specific PTS system component TERM 2740 2409840 - 2409823 - T 100 -12.7 -4.65895 | opp_overlap 2409823 TGCCGCAGTGAAAAA TGGCGCC CATC GGCGCCA TTTTTTTATGCTTCC TERM 2741 2409823 - 2409840 + T 100 -12.7 -5.71983 | opp_overlap 2409823 TGCCGCAGTGAAAAA TGGCGCC CATC GGCGCCA TTTTTTTATGCTTCC pdxK 2410697 - 2409846 - | pyridoxal kinase TERM 2742 2410137 - 2410150 + g 77 -6.7 -4.56597 | CACCCATTTTAATGT GTCTG AAAG CAGAC TTTTTGCGGCAGCAA TERM 2743 2411019 - 2411029 + G 72 -6.8 -4.25458 | opp_overlap 2411017 2411019 GTAACCGCATTAACA CTGC CGA GCAG TTTATTGATAAGGTT yfeK 2410802 - 2411170 + | hypothetical protein cysM 2412084 - 2411173 - | cysteine synthase B TERM 2744 2411246 - 2411230 - G 76 -12.3 -2.64155 | overlap 2411226 CCCGGTGGAAAGGTA GCGATCG CCA CGATCGC AGATGATCGCTACCA TERM 2745 2412196 - 2412169 - R 89 -9.1 -4.72272 | gap 1, opp_overlap 2412169 2412186 CCTTGCCATTAAAAA GCCCGGA-TCGC GGGAA GCGCCTCCGGGC GTTTAACATTCACTC cysA 2413315 - 2412218 - | sulfate/thiosulfate transporter subunit cysW 2414180 - 2413305 - | sulfate/thiosulfate transporter permease subunit cysU 2415013 - 2414180 - | sulfate/thiosulfate transporter subunit cysP 2416029 - 2415013 - | thiosulfate transporter subunit TERM 2746 2415103 - 2415132 + g 79 -5 -4.92828 | gap 1 GGAGCCAAATTTGTC TTCCACGCGGAAC AGCTC GGTCTGCG-GGAA TTTGTTTTTCAGTTT TERM 2747 2416320 - 2416297 - R 87 -11 -3.93038 | TAGTTCAAGACGAAA TCCTCCCCAC AAAT GCAGGGAGGA AACAGAGGTGAATCA ucpA 2417124 - 2416333 - | short chain dehydrogenase yfeT 2418110 - 2417253 - | hypothetical protein TERM 2748 2417739 - 2417764 + g 79 -9.7 -3.72576 | gap 1, opp_overlap 2417757 2417758, overlap 2417739 AATGATTTTTTGCAG CC-GCGCGTAGT CAA ACAACGCGCAGG TTTGCTCCAGCGCCA TERM 2749 2419138 - 2419120 - g 79 -2.4 -5.1925 | gap 1 GCAGAAGCTAAAAAA CGCC-TG GATCAA CACGGCG GCTTTATTCGTCAGG murQ 2418274 - 2419170 + | N-acetylmuramic acid-6-phosphate etherase TERM 2750 2419353 - 2419369 + G 84 -7.9 -4.60487 | CGTCATTTTGACCAG CGACCAG GTG CAGGTCG TTTTTGGGCCTGGTA TERM 2751 2420001 - 2420013 + G 71 -10.5 -2.93252 | overlap 2419997 CTACCTGATCATTAT GCCGC TGG GCGGC TGGTTATTCGAAGGT murP 2419174 - 2420598 + | N-acetylmuramic acid phosphotransfer permease TERM 2752 2420746 - 2420786 + T 73 -9.6 -3.30441 | opp_overlap 2420753, overlap 2420747 2420749 2420782 2420783 GGATCGCTGGATTAG CCAGCAAGTGGACGCCGG TTATC CCGGCGTAAACCTGCTGA TTATAAAAGATAATC TERM 2753 2420747 - 2420785 + T 81 -13.1 -2.5805 | opp_overlap 2420753, overlap 2420746 2420749 2420782 2420783 GATCGCTGGATTAGC CAGCAAGTGGACGCCGG TTATC CCGGCGTAAACCTGCTG ATTATAAAAGATAAT SDY_2627 2421739 - 2421524 - | iso-IS1 ORF2 SDY_2628 2421960 - 2421736 - | iso-IS1 ORF2 TERM 2754 2422687 - 2422714 + r 100 -14.2 -3.767 | opp_overlap 2422687 CAAAAGTAATAAAAA GGCCAGTCAGTA ATGT TACTGCCTGGCC TTTAATCAATGAATC TERM 2755 2422714 - 2422687 - R 100 -14.2 -5.28166 | opp_overlap 2422687 CAAAAGTAATAAAAA GGCCAGTCAGTA ATGT TACTGCCTGGCC TTTAATCAATGAATC TERM 2756 2422745 - 2422735 - R 71 -6.8 -4.10331 | TCAATGAATCAGAAA CGCT TAT AGCG CCATCAACTTGTCCA SDY_2629 2423664 - 2422738 - | hypothetical protein TERM 2757 2422784 - 2422794 + g 72 -8.2 -3.72576 | GCGAAATAATAGCCG CCGG TTA CCGG TTTGGTGAAACGCAA TERM 2758 2423659 - 2423677 + g 77 -10.3 -3.63341 | opp_overlap 2423659 TCCTGAAAATAATAA TGCCACG CAATC CGTGGCA TTGTTGGGCGCTATT TERM 2759 2423677 - 2423659 - G 85 -10.3 -4.20868 | opp_overlap 2423659 TCCTGAAAATAATAA TGCCACG CAATC CGTGGCA TTGTTGGGCGCTATT SDY_2630 2424308 - 2423733 - | hypothetical protein TERM 2760 2424080 - 2424060 - G 77 -3.1 -5.06451 | CATCACTTCAAAAAA GCGCACCAC GTT GCCGTTCGC GGTTTTCATTCCGCT SDY_2631 2424824 - 2424369 - | hypothetical protein TERM 2761 2424613 - 2424597 - G 74 -2.1 -5.06816 | overlap 2424598 2424599 ACCGCTCAACAAAAA CGCCAGC ACC GCCGGAA TGCCAGGAATCAGCC SDY_2632 2425230 - 2424805 - | putative acetyltransferase TERM 2762 2426245 - 2426234 - g 72 -5.8 -4.36914 | opp_overlap 2426234, overlap 2426235 CGTTTCGTCAGAAAA TCGC CACA GCGA TTGCTGAAGGCGTGA amiA 2425444 - 2426313 + | N-acetylmuramoyl-l-alanine amidase I TERM 2763 2426541 - 2426587 + G 100 -17.5 -4.10164 | gap 2 GCCTGCTTCCGCCAC CGCTCATCGCC-CGGAACT-TGC CGG GCGCAGTTTCGAGGCGATGGGCG TTTCTCTGGTAGTGC hemF 2426317 - 2427216 + | coproporphyrinogen III oxidase yfeG 2428274 - 2427222 - | transcriptional regulator EutR TERM 2764 2427703 - 2427737 + g 70 -7.1 -4.02456 | gap 2, opp_overlap 2427723, overlap 2427731 2427733 TTCTCGCAAAACGTC GCCAGCGCCTGTTGGAC AAA GCCCCACAG-CGC-GGC TTTATGCTGCTCTTT SDY_2636 2428826 - 2428320 - | hypothetical protein TERM 2765 2428368 - 2428400 + g 70 -4.8 -4.56597 | overlap 2428370 TTTACGTAACGTCCC GGCAGAAAAGAGCT GTTCG AGCGCATTTCTGGC TTTTTCCAGCGGCCA SDY_2637 2429492 - 2428833 - | hypothetical protein eutC 2430389 - 2429502 - | ethanolamine ammonia-lyase small subunit TERM 2766 2430425 - 2430455 + H 72 -8.9 -3.62096 | gap 1, opp_overlap 2430422 TCAGAAGAACAGTGA CGGATCGCCCGCCC GTTT GGTCAGGCGA-CCG TTTGCCATAATGCCC SDY_2640 2431509 - 2431691 + | iso-IS1 ORF2 SDY_2641 2431688 - 2431903 + | iso-IS1 ORF2 SDY_2642 2432190 - 2431984 - | hypothetical protein TERM 2767 2432132 - 2432117 - G 70 -5.4 -4.39002 | overlap 2432105 AAACGGTCGAGAAAA CCGATA TGCA CATCGG CGGCTTTCAGTGCTA TERM 2768 2432154 - 2432168 + g 82 -11.4 -3.53761 | opp_overlap 2432153 TCAGTGCTAAATCAC CGGCGA TCA TCGCCG TTTCGCCAGGAGTTA SDY_2643 2432648 - 2432253 - | iso-IS1 ORF2 SDY_2644 2432843 - 2433073 + | hypothetical protein TERM 2769 2433367 - 2433338 - T 100 -15.1 -3.66378 | overlap 2433339 TATATTGCAGCCAAA CCGCTTACCCTGA ATAT TCAGGGTAAGCGT GAGAGTTAAAAAAGA TERM 2770 2433366 - 2433339 - T 100 -18.6 -2.79505 | overlap 2433338 ATATTGCAGCCAAAC CGCTTACCCTGA ATAT TCAGGGTAAGCG TGAGAGTTAAAAAAG SDY_2645 2435663 - 2433384 - | malic enzyme TERM 2771 2433820 - 2433799 - G 70 -5.1 -4.4261 | gap 1, overlap 2433800 GGCTCAATACCAAAA CGACGGACAG TTT CTG-CCGCCA TCAAGGTGATCTCCG TERM 2772 2434457 - 2434436 - G 72 -10.1 -3.32769 | CGTCGAAATCAGCAA TCGGACGCG TCGC CACGCCCGA CTCCATCGCCGCTTT TERM 2773 2434821 - 2434834 + g 70 -3.8 -4.6635 | overlap 2434799 CAGCGCCAGGATCAT TGGC GCTCGA GCCA TTTTCTTCACCATTT TERM 2774 2435102 - 2435112 + g 71 -3.2 -4.82901 | AAACCACCATCCGCA CGTC AGA GATG TTTTTCTCCACCACG TERM 2775 2435727 - 2435699 - R 78 -6.1 -4.55697 | gap 1, opp_overlap 2435717 ACGTTCACAAATAAA GTGTGTGGGCAA CAGCCC CTGCCCACA-AC GTGGCGCACATTATT TERM 2776 2436421 - 2436462 + r 100 -10.9 -5.04325 | opp_overlap 2436404, overlap 2436422 GCAACCTGACGCTGC TGTTTTCTTTTGCACAGGC GCGG GCCTGTGCAGAAGCGGGCG TTTTTCTGATTTCGC TERM 2777 2436422 - 2436461 + r 88 -12.2 -3.6151 | overlap 2436421 CAACCTGACGCTGCT GTTTTCTTTTGCACAGGC GCGG GCCTGTGCAGAAGCGGGC GTTTTTCTGATTTCG SDY_2648 2438298 - 2437903 - | iso-IS1 ORF2 SDY_2649 2440846 - 2439779 - | hypothetical protein TERM 2778 2439844 - 2439821 - G 83 -12.4 -3.35798 | opp_overlap 2439835 ACGGGTGATCCACAA CGTGGGCCAG GCGT CTGGCCCATG CCAGTTATCGCAGGT TERM 2779 2440845 - 2440834 - G 77 -5.8 -4.6008 | AAAAGAGAAGGAAAA TGCG ATAG CGCA TGGACGGTACGACCC yffH 2441547 - 2440972 - | hypothetical protein yffG 2443594 - 2441615 - | putative oxidoreductase Fe-S binding subunit SDY_2652 2444021 - 2443626 - | iso-IS1 ORF2 TERM 2780 2444592 - 2444615 + G 100 -5.2 -5.55698 | gap 1, opp_overlap 2444589, overlap 2444592 ATTGTTAAACGACCC GTCTC-GGCCA GTC TGGCCCGGGCC TTTTTTTACATTGTG TERM 2781 2444592 - 2444614 + G 72 -7.6 -3.91792 | opp_overlap 2444589, overlap 2444592 ATTGTTAAACGACCC GTCTCGGCCA GTC TGGCCCGGGC CTTTTTTTACATTGT TERM 2782 2445291 - 2445281 - g 71 -3.2 -4.81212 | overlap 2445283 GTCAGTAGAAGAAAA GACC CGC GATC TCCACGAGGCCAAGC TERM 2783 2445545 - 2445601 + G 72 -6.7 -4.15841 | gap 2, opp_overlap 2445545 2445564 2445565, overlap 2445565 GCACTGGCAAAATAG CCACGTTTCATCATC-A-GAACCGCTG CTTAA CAGCGTTTCGTCGATGCTGGGACGCGG TTTGTACTTTAATCA narQ 2444574 - 2446274 + | nitrate/nitrite sensor protein NarQ TERM 2784 2446497 - 2446516 + G 82 -2.8 -5.26875 | gap 1, overlap 2446499 2446500 GGCAATCCTGTTGTG TCTGACAGG GAC CCTGGC-GA TTTTTTCATTGCCCG TERM 2785 2448432 - 2448415 - g 70 -6.9 -4.11363 | AACAAGATTAAAGAA GCTCGCG TTAT CGCCAGC AGCCCGCCAGCAATT acrD 2446438 - 2449551 + | aminoglycoside/multidrug efflux system TERM 2786 2449591 - 2449556 - f 82 -11.4 -3.53444 | opp_overlap 2449563, overlap 2449563 GCCCGGAATAAGCAA TAAAAAAGGCGACA TGCTAATG TGTCGCCTTTTTCA ACTTTCCGATTAAGA TERM 2787 2449563 - 2449584 + F 84 -8.7 -4.70879 | opp_overlap 2449563 2449556 ATAAGCAATAAAAAA GGCGACATG CTAA TGTGTCGCC TTTTTCAACTTTCCG TERM 2788 2449584 - 2449563 - f 91 -7.3 -5.57396 | opp_overlap 2449563, overlap 2449556 ATAAGCAATAAAAAA GGCGACA TGCTAATG TGTCGCC TTTTTCAACTTTCCG TERM 2789 2449605 - 2449623 + F 75 -9.6 -3.52009 | opp_overlap 2449605 2449608, overlap 2449602 2449601 2449608 2449614 CAACTTTCCGATTAA GAACTTGC TCA GCAGGTTC TTGCTGTTTGTACTT TERM 2790 2450339 - 2450307 - g 72 -4.8 -4.64676 | opp_overlap 2450314 CCACCCGCAATAAAA TCACCGATGCGGCC TCTGC GGCGGCATTAATGA CTGAAATGCCTGCAA yffB 2450090 - 2450446 + | hypothetical protein dapE 2450450 - 2451577 + | succinyl-diaminopimelate desuccinylase SDY_2657 2451581 - 2451805 + | hypothetical protein TERM 2791 2451851 - 2451806 - T 75 -9.8 -3.55973 | opp_overlap 2451813 2451817 2451820, overlap 2451802 2451811 CAACCGAAGAAGTAA GC-TAAGTGGCCGGATAAGGCG TTAA CGCCGCATCCGGCCA-TGATGC CTGATACTGTCTTAT TERM 2792 2451846 - 2451811 - T 100 -15.4 -3.26428 | opp_overlap 2451813 2451817 2451820, overlap 2451806 2451802 GAAGAAGTAAGCTAA GTGGCCGGATAAGGCG TTAA CGCCGCATCCGGCCAT GATGCCTGATACTGT ypfH 2452272 - 2451886 - | hypothetical protein SDY_2659 2452585 - 2452319 - | hypothetical protein SDY_2660 2453062 - 2452667 - | iso-IS1 ORF2 ypfI 2455448 - 2453433 - | hypothetical protein TERM 2793 2453582 - 2453592 + g 86 -6.8 -4.96848 | opp_overlap 2453577 TGGTACATAACTGCG CGTC GCT GACG TTTTTCTGTAAACGC TERM 2794 2455059 - 2455048 - G 72 -5.8 -4.39002 | AAATGCTGGACAAAA TGCG GCGT CGCA ATAGGGTCAGGGCAA SDY_2662 2455678 - 2455463 - | hypothetical protein SDY_2663 2456257 - 2455712 - | hypothetical protein purC 2457207 - 2456494 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 2795 2456558 - 2456594 + g 72 -5.7 -4.55295 | opp_overlap 2456571, overlap 2456560 ATCAGGCCACCGAGG CTCTGGCGGAAACGGTC TTT GTCCATTTTCTCCAGTG TTTCTTTGTCCCACA TERM 2796 2457389 - 2457416 + Gr 76 -4 -4.90266 | opp_overlap 2457393, overlap 2457391 2457393 CGTATCATATCAGAA AAAAGGGCCGGA TGAT TCCAGCCCTGTA TTTTTACTTGCTAAA TERM 2797 2457391 - 2457414 + Gr 70 -6.6 -4.07008 | opp_overlap 2457393, overlap 2457389 2457393 TATCATATCAGAAAA AAGGGCCGGA TGAT TCCAGCCCTG TATTTTTACTTGCTA TERM 2798 2457412 - 2457393 - gR 100 -11.4 -5.34555 | opp_overlap 2457393 2457391 2457389 TCATATCAGAAAAAA GGGCCGGA TGAT TCCAGCCC TGTATTTTTACTTGC TERM 2799 2457393 - 2457412 + Gr 73 -9.2 -3.61182 | opp_overlap 2457393, overlap 2457391 2457389 TCATATCAGAAAAAA GGGCCGGA TGAT TCCAGCCC TGTATTTTTACTTGC nlpB 2458457 - 2457420 - | lipoprotein SDY_2665 2457258 - 2457509 + | hypothetical protein TERM 2800 2457594 - 2457612 + gT 79 -11 -3.41878 | GCCCAGTTCCTGCCA GTCGCTGT CAG ACAGCGGC TTATAAGTTACGGCC TERM 2801 2458043 - 2458071 + gT 77 -6 -4.62069 | opp_overlap 2458024, overlap 2458046 TGGTCAGTGTCTGAC CAGCATCATCAC GTTGG GTGATGGTGTAG TTTTTCGCCTGCAGC dapA 2459349 - 2458471 - | dihydrodipicolinate synthase gcvR 2459495 - 2460067 + | glycine cleavage system transcriptional repressor bcp 2460067 - 2460537 + | thioredoxin-dependent thiol peroxidase TERM 2802 2461348 - 2461336 - g 82 -2.6 -5.35815 | opp_overlap 2461339 CAGATGAAAGAAAAA CAGC GCCTT GCCG CAAGCTGGTTTGCCA TERM 2803 2461369 - 2461381 + G 73 -9.1 -3.6682 | TGGTTTGCCAATGGC GGGGA GGA TCCCC TTTCCCTCACTCAGG hyfA 2460751 - 2461407 + | hydrogenase 4 Fe-S subunit TERM 2804 2462562 - 2462544 - g 70 -6.6 -4.11216 | opp_overlap 2462545, overlap 2462545 2462548 GGGGCACTGGCAAAA CGGATGCC GTG GACAGCCG CAGCATGCCTGATTG TERM 2805 2462621 - 2462648 + G 76 -10.6 -3.37056 | GCTGAATGGTTTTAT CAGCGAATGGTA CACC TGCCAGTCGCTG TTCTCACTAAGTCGT hyfB 2461407 - 2463425 + | hydrogenase 4 subunit B TERM 2806 2464026 - 2464038 + G 72 -7.7 -3.95022 | CTGCTTCATTGAGAT GGGAA AAA TTCCC TTTGATGTTGCTGAA TERM 2807 2464286 - 2464301 + G 79 -2.4 -5.2189 | opp_overlap 2464284 CTATCGCAGAAAACA CGCTGG CACG CGGGCG TTTTTTACTCATTCA hyfC 2463415 - 2464383 + | hydrogenase 4 membrane subunit TERM 2808 2465560 - 2465572 + F 76 -9.1 -3.69283 | GATTACCGGCGTACC GCCGT TCA ACGGC TTCTTCAGTAAATTC hyfE 2465851 - 2466501 + | hydrogenase 4 membrane subunit TERM 2809 2467396 - 2467408 + G 95 -9.1 -4.94972 | CGGCATGTTGTCGGT TGCCG TGG CGGCA TTTTTCATTCTGGTA hyfF 2466506 - 2468086 + | hydrogenase 4 subunit F TERM 2810 2468945 - 2468959 + G 71 -2.8 -4.75309 | TCATTTGCTCAACCT TGGC CTCTCCT GCCA TTTTGTTGGATTTGA hyfG 2468076 - 2469791 + | hydrogenase 4 subunit TERM 2811 2470253 - 2470238 - f 86 -9 -4.39002 | overlap 2470226 AAATGCGCCACAAAA CCGCAA AATG TTGCGG GCGCAAGCGAGCGTC hyfI 2470343 - 2471101 + | hydrogenase 4 Fe-S subunit TERM 2812 2471494 - 2471472 - gf 77 -11.3 -3.16055 | GAAATTGTGCAGGAA CCGGCCATC TATCT GATGGCCAG AAAAATTGCGTGAGA SDY_2679 2471031 - 2471507 + | putative protein processing element TERM 2813 2473641 - 2473616 - g 93 -10.5 -4.38712 | gap 1 TTGAGCGCCAGAAAA GCGGCAAT-CGC TGA ACGGATTGCCGC CCATAAAATTGCCCG focB 2473571 - 2474419 + | putative formate transporter TERM 2814 2474453 - 2474424 - T 100 -12.9 -4.62872 | opp_overlap 2474422 2474421 AGGAACTCTGAAAAA TCAGCCCGGCAAA ACAG TTCGTCGGGCTGA AGATTATTCTTGCGC perM 2475518 - 2474457 - | putative permease TERM 2815 2476211 - 2476185 - g 100 -16.6 -3.09933 | opp_overlap 2476194 2476201, overlap 2476187 GCGCAAGCGATGGAA GATCAGCAGCGC AGC GCGCCGCTGACC TGGGTCGGCGCGTTA TERM 2816 2476209 - 2476187 - g 95 -15.6 -3.1085 | opp_overlap 2476194 2476201, overlap 2476185 GCAAGCGATGGAAGA TCAGCAGCGC AGC GCGCCGCTGA CCTGGGTCGGCGCGT SDY_2683 2475732 - 2477195 + | hypothetical protein SDY_2684 2477216 - 2477575 + | putative oxidoreductase SDY_2685 2478459 - 2477713 - | DNA replication initiation factor TERM 2817 2478469 - 2478511 + r 76 -7.7 -4.26393 | overlap 2478475 TACCACAGAATGCCA TGATGTTTGAACCGGGCAG CAACA CTGCCCGGTCGGTACATTA TTTGTCTGTTATATC uraA 2479798 - 2478509 - | uracil transporter TERM 2818 2479018 - 2479033 + g 79 -4 -5.04987 | gap 1 AACGGTGCAGACCTG GATC-GC GCA GCAGATC TTTTTTGACGATATT TERM 2819 2479839 - 2479873 + r 83 -4.3 -5.44198 | opp_overlap 2479847, overlap 2479842 2479847 ATAGGCGCTTTACTC AAAAAAAAGCCGACT CTTAA AGTCGGCTTTAATTA TTTTTATTCTTTATT TERM 2820 2479842 - 2479870 + r 78 -6 -4.74161 | opp_overlap 2479847, overlap 2479839 2479847 GGCGCTTTACTCAAA AAAAAGCCGACT CTTAA AGTCGGCTTTAA TTATTTTTATTCTTT TERM 2821 2479865 - 2479847 - R 100 -11 -5.81412 | opp_overlap 2479847 2479842 2479839 TTTACTCAAAAAAAA GCCGACTC TTA AAGTCGGC TTTAATTATTTTTAT TERM 2822 2479847 - 2479865 + r 90 -10.3 -4.2711 | opp_overlap 2479847, overlap 2479842 2479839 TTTACTCAAAAAAAA GCCGACT CTTAA AGTCGGC TTTAATTATTTTTAT upp 2480510 - 2479884 - | uracil phosphoribosyltransferase TERM 2823 2480018 - 2480045 + g 72 -8.4 -3.80573 | overlap 2480019 CCAGCGCAGCGATAC CTTCTGGTGCAG CTAC CAGCACCAGAAC TTTGATGCTGCTGCA TERM 2824 2480019 - 2480044 + g 75 -11.9 -2.88023 | overlap 2480018 CAGCGCAGCGATACC TTCTGGTGCAG CTAC CAGCACCAGAA CTTTGATGCTGCTGC purM 2480836 - 2481873 + | phosphoribosylaminoimidazole synthetase TERM 2825 2482014 - 2481983 - g 100 -13.7 -3.72027 | opp_overlap 2482009, overlap 2481980 AGTTTTCAGCAATAA GGCCGACGCGTTC GGCCTT GAACGCGCCCGCC AGGCGGGTATTGCAA TERM 2826 2482009 - 2482021 + G 72 -10.5 -3.02144 | opp_overlap 2481983 TCGGCCTTGAACGCG CCCGC CAG GCGGG TATTGCAACGCATAC purN 2481873 - 2482511 + | phosphoribosylglycinamide formyltransferase TERM 2827 2482528 - 2482547 + F 100 -10.7 -4.74504 | opp_overlap 2482527 2482528 GCCCCGTAGTTAAAG CGCCAGC TCTGCC GCTGGCG TTTTTCAATTCACCT TERM 2828 2482547 - 2482528 - f 72 -10.7 -2.78679 | opp_overlap 2482528, overlap 2482527 GCCCCGTAGTTAAAG CGCCAGC TCTGCC GCTGGCG TTTTTCAATTCACCT TERM 2829 2484518 - 2484481 - g 70 -6.9 -4.10657 | overlap 2484482 TTATATTTTTGAAAA TGGCGGCGATAAAAAGG TCTA CCTTTCTTCCGCCGACT GGATGACGCGCAATA ppk 2482682 - 2484748 + | polyphosphate kinase ppx 2484753 - 2486294 + | exopolyphosphatase TERM 2830 2486300 - 2486328 + T 88 -12.4 -3.6279 | CGCCGCTTAATGCTT TACGGGCCGACG AGAAA TGTCGGCCCGCA TTATTCAGGCACTTT TERM 2831 2487922 - 2487933 + T 79 -4.4 -5.19261 | TAATGCCAGCAGCCA GAGT GCGA ACTC TTTTTTGGTGACTTT TERM 2832 2488460 - 2488449 - T 76 -2.2 -5.32599 | overlap 2488441 GATAAAAGAGAAAAA CCTC ACCG GAAG AAATATGCGCGAAAG SDY_2693 2488976 - 2488581 - | iso-IS1 ORF2 SDY_2694 2489171 - 2489440 + | hypothetical protein SDY_2695 2489883 - 2489488 - | iso-IS1 ORF2 SDY_2696 2490459 - 2490650 + | hypothetical protein SDY_2697 2491125 - 2490871 - | hypothetical protein SDY_2698 2491320 - 2491715 + | iso-IS1 ORF2 SDY_2699 2491735 - 2492265 + | putative outer membrane lipoprotein SDY_2700 2493141 - 2492236 - | insertion element IS2 transposase InsD SDY_2701 2493464 - 2493099 - | insertion sequence 2 OrfA protein SDY_2702 2493605 - 2494144 + | hypothetical protein TERM 2833 2494184 - 2494213 + T 85 -12.3 -3.41693 | opp_overlap 2494189, overlap 2494189 TGATTCTTGAAGATA AAAAACCCTCTGT AGTA ACAGAGGGTTTTG TTCATTCATAGTGCA TERM 2834 2494189 - 2494208 + T 100 -12.2 -4.80178 | opp_overlap 2494189, overlap 2494184 CTTGAAGATAAAAAA CCCTCTGT AGTA ACAGAGGG TTTTGTTCATTCATA TERM 2835 2494208 - 2494189 - T 100 -12.2 -5.47159 | opp_overlap 2494189 2494184 CTTGAAGATAAAAAA CCCTCTGT AGTA ACAGAGGG TTTTGTTCATTCATA guaA 2495814 - 2494237 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 2836 2495876 - 2495854 - R 100 -14.9 -4.33674 | AACAGATAATATAAA TCGCCCGAC ATGAA GTCGGGCGA AGAGAATCAGGAGCC guaB 2497349 - 2495883 - | inositol-5-monophosphate dehydrogenase TERM 2837 2496801 - 2496815 + g 73 -4.2 -4.79667 | overlap 2496812 GTCATCAACCACCAG CGCTTT TTC AACGCG TTTTTCGTGCATTTT xseA 2497511 - 2498881 + | exodeoxyribonuclease VII large subunit SDY_2706 2499114 - 2498878 - | hypothetical protein engA 2500634 - 2499162 - | GTP-binding protein EngA TERM 2838 2500732 - 2500701 - R 100 -13.8 -3.90048 | opp_overlap 2500707, overlap 2500702 2500707 TCGTTGTTAAAAACA GGAAAACGGCCCCT GTCC AGGAGCCGTTTTCA AAGTGAACGACAGAG TERM 2839 2500731 - 2500702 - R 100 -17.3 -2.93708 | opp_overlap 2500707, overlap 2500701 2500707 CGTTGTTAAAAACAG GAAAACGGCCCCT GTCC AGGAGCCGTTTTC AAAGTGAACGACAGA TERM 2840 2500726 - 2500707 - R 95 -11.4 -4.60746 | opp_overlap 2500707, overlap 2500702 2500701 TTAAAAACAGGAAAA CGGCCCCT GTCC AGGAGCCG TTTTCAAAGTGAACG TERM 2841 2500707 - 2500726 + r 79 -9.2 -4.11216 | opp_overlap 2500707 2500702 2500701 TTAAAAACAGGAAAA CGGCCCCT GTCC AGGAGCCG TTTTCAAAGTGAACG SDY_2708 2501930 - 2500752 - | outer membrane protein assembly complex subunit YfgL TERM 2842 2501178 - 2501162 - G 78 -8.7 -4.18506 | overlap 2501174 CCAGCGCGAAAACAA CGCCGTT AAC AACGACG GGAGTCGTGTCAACA SDY_2709 2502561 - 2501941 - | hypothetical protein TERM 2843 2502104 - 2502122 + g 77 -8.2 -4.07687 | GCAGCCCACCCTTCA CCTTTGAT GGT ATCAAGGG TTTTCAGCGCGGCAT TERM 2844 2502373 - 2502385 + g 82 -9.1 -4.25104 | TTTGCCTTCGCTCAC TGCGG TAA CCGCA TTTTGATAGGCAAGA hisS 2503853 - 2502579 - | histidyl-tRNA synthetase TERM 2845 2503817 - 2503842 + g 86 -6.1 -5.03747 | CGCTAGGCAGGTAAT CGTTCATGCCG CGAA TGGCTTGAATG TTTTTTGCCACGTTT TERM 2846 2503926 - 2503880 - R 91 -8.1 -5.0916 | gap 2, opp_overlap 2503884 TTCTGAATATAAAAA TGAACCCTCAACGCTTCCCTCAA TGT TTG-GGGA-GCCATGCGGGTTCA ATCATACACGGGAAA TERM 2847 2503955 - 2503935 - R 70 -9.7 -3.00298 | GGGTTCAATCATACA CGGGAAACG AGG CGCTTCCCA TCACGTTATTATTTT ispG 2505082 - 2503964 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase yfgA 2506122 - 2505109 - | hypothetical protein TERM 2848 2506402 - 2506365 - R 100 -18 -4.42653 | gap 1 ATTTCATTCATAAAA CATTACGCCACGG-TAC ATAAA GTAACCGTGGCGTAATG GCTATCAGACCGCTT yfgB 2507561 - 2506407 - | hypothetical protein TERM 2849 2507323 - 2507343 + g 71 -9 -3.50832 | gap 1 TCTTCAACCACTTCC GGTGCGCGG ATCT CCGC-CACC TCTTTCAGTTTGCCG TERM 2850 2507650 - 2507619 - R 91 -8.7 -5.04249 | gap 2, opp_overlap 2507618 2507615 2507614, overlap 2507621 GGTTGAAAAAAGAAA CG-CCCCGG-TGAGC GGCT GCTCGTCCGGGGGCG CTGCATTGTACAAAT ndk 2508142 - 2507711 - | nucleoside diphosphate kinase TERM 2851 2508513 - 2508500 - H 72 -8.1 -3.66772 | GTAAACGTTTAATAA TCGCG CCAT CGCGA ACGCCTGTCAGCTGC TERM 2852 2508677 - 2508693 + H 76 -8 -4.25104 | opp_overlap 2508676 CCTGAGGGCAATCAG CGGCAA CACGT TTGCCG TTTTCATCCAGCCAG TERM 2853 2510435 - 2510412 - H 73 -9.6 -3.32963 | gap 1 ATTGTTACCGGATAA CGCCAGATGCC GTC AGCATC-GGCG AAGCGCCAGAGCTGC TERM 2854 2510878 - 2510888 + H 71 -6.8 -4.19238 | overlap 2510862 2510861 TGGCGCTACCGTTCG CCAG ATT CTGG TTTTCCAGTTCCAGA TERM 2855 2511588 - 2511601 + H 84 -8.1 -4.72272 | CAGATTTCACGCAGC GCACC CAGT GGTGC TTTTTGCTGACGGGC TERM 2856 2511754 - 2511710 - H 70 -9.4 -3.35597 | opp_overlap 2511720, overlap 2511708 CGGATCTTGTAAATA GCGCAG-CAGACGCTCATTACC CCG GTTAATG-GCGTCTGTCGGCAC GCTGTAACCCTGTTC TERM 2857 2513140 - 2513098 - H 95 -10.9 -4.46112 | gap 2 GCGTACTCAAATAAA GATCATGACGATTCCAGGT TTTATCG ACC-GGAATCGTCA-GATC CAGCCCTTGAGCCGG TERM 2858 2513971 - 2513943 - H 79 -8.1 -4.27316 | overlap 2513951 TCGCCGAATTCAAAA CCAGGTAAGGCTG ACA CAGCCTCACGCAG TGGGTGCAGGAAAAG TERM 2859 2516481 - 2516509 + G 75 -5.3 -4.64676 | gap 1, overlap 2516484 ACCGATTATCGTCAG CTGCGGCT-CTG GTGTAA CAGCAGCCGTGG TTTTGTTGGCACTCG sseA 2515771 - 2516616 + | 3-mercaptopyruvate sulfurtransferase TERM 2860 2517004 - 2516990 - T 89 -11.4 -4.10744 | opp_overlap 2516984 CGAGGTAAATAATAA CCGGAG TCT CTCCGG TAACAATTTACTGGT TERM 2861 2517053 - 2517076 + T 95 -12.4 -4.3208 | opp_overlap 2517048, overlap 2517055 CAGCAGGTAAGCCCG AATGCCGCCC TTTG GGGCGGCATA TTTTAGATTATCCGA TERM 2862 2517055 - 2517074 + T 100 -15 -3.76167 | opp_overlap 2517048, overlap 2517053 GCAGGTAAGCCCGAA TGCCGCCC TTTG GGGCGGCA TATTTTAGATTATCC TERM 2863 2517311 - 2517281 - T 100 -9.8 -5.00616 | opp_overlap 2517288, overlap 2517288 CTTTTCTTTAAAAAA CAAAAAACCGCC AAAATCA GGCGGTTATTTG TTGCCGGTTTGGTTC TERM 2864 2517304 - 2517288 - T 100 -6.5 -6.04324 | opp_overlap 2517288, overlap 2517281 TTAAAAAACAAAAAA CCGCC AAAATCA GGCGG TTATTTGTTGCCGGT TERM 2865 2517288 - 2517304 + T 72 -6.5 -4.20768 | opp_overlap 2517288 2517281 TTAAAAAACAAAAAA CCGCC AAAATCA GGCGG TTATTTGTTGCCGGT TERM 2866 2517737 - 2517760 + T 95 -12.4 -4.3208 | opp_overlap 2517732, overlap 2517739 CAGCAGGTAAGCCCG AATGCCGCCC TTTG GGGCGGCATA TTTTAGATTATCCGG TERM 2867 2517739 - 2517758 + T 100 -15 -3.76167 | opp_overlap 2517732, overlap 2517737 GCAGGTAAGCCCGAA TGCCGCCC TTTG GGGCGGCA TATTTTAGATTATCC sseB 2518539 - 2517763 - | enhanced serine sensitivity protein SseB TERM 2868 2518268 - 2518297 + g 83 -13 -3.02263 | opp_overlap 2518265, overlap 2518272 ATCTCAAACAATGTG CGAACGGGCATT ACGACA AATGCCTGTTCG TCTTCAACCGCCTGT TERM 2869 2518601 - 2518574 - R 74 -10.6 -3.28791 | gap 1, overlap 2518575 ACGTTCGGGGCACAA GTGCCTGATGCGC TAG GCGTATCAGGC-C TACAAGGGAGTCGCA TERM 2870 2518601 - 2518575 - R 70 -10.8 -2.57132 | overlap 2518574 CGTTCGGGGCACAAG TGCCTGATGCGC TAG GCGTATCAGGCC TACAAGGGAGTCGCA TERM 2871 2518641 - 2518676 + r 86 -11.8 -3.51976 | opp_overlap 2518653, overlap 2518637 2518644 ATTTGCAATACTTTG TAGGCCGGATAAGGCG TTTA CGCCGCATCCGGCATA TTAGTTTACGCCGTT TERM 2872 2518644 - 2518673 + r 81 -13.5 -2.59569 | opp_overlap 2518653, overlap 2518641 2518637 TGCAATACTTTGTAG GCCGGATAAGGCG TTTA CGCCGCATCCGGC ATATTAGTTTACGCC pepB 2519965 - 2518682 - | aminopeptidase B TERM 2873 2520008 - 2519989 - R 95 -12.8 -4.07568 | TCCTTCTTTGTAAAA GGGCCGCC AGTT GGCAGCCC CAGGATTTTTCCGCT yfhJ 2520343 - 2520143 - | hypothetical protein fdx 2520690 - 2520355 - | [2FE-2S] ferredoxin, electron carrer protein hscA 2522542 - 2520692 - | chaperone protein HscA TERM 2874 2522023 - 2522035 + g 76 -9.1 -3.74693 | CGTGAAGGCCCGCCA GACGC GCC GCGTC TTTGGTGCCCTGACG hscB 2523074 - 2522559 - | co-chaperone HscB TERM 2875 2523154 - 2523128 - R 84 -8.7 -4.6951 | gap 1, opp_overlap 2523128 ATCAGGTAAAACAAA CCCCACGCGCAG GCGA CCACG-GTGGGG TTATCGGTATGCGCA iscA 2523493 - 2523170 - | iron-sulfur cluster assembly protein SDY_2725 2523896 - 2523510 - | scaffold protein yfhO 2525162 - 2523924 - | putative aminotransferase SDY_2727 2525738 - 2525250 - | DNA-binding transcriptional regulator IscR TERM 2876 2525634 - 2525624 - G 75 -6.8 -4.38927 | GTTCCAGATAAGAAA GGGA AAT TCCC TGACGTTCGGAAATA TERM 2877 2525761 - 2525773 + r 91 -6.2 -5.55769 | TTCACCTCAAACTCG CCCC TGCCC GGGG TTTTTTATTGTAAAA TERM 2878 2525823 - 2525870 + r 72 -8.6 -3.6715 | overlap 2525825 GGGTCAAGTCTGACA TTCCCGAGTAAATTGGTCAACT ATTT ACTTGACTGATTTAGTCGGGTA TTTAACCTTCAGTGC TERM 2879 2525825 - 2525868 + r 79 -11.2 -3.4149 | overlap 2525823 GTCAAGTCTGACATT CCCGAGTAAATTGGTCAACT ATTT ACTTGACTGATTTAGTCGGG TATTTAACCTTCAGT SDY_2728 2526775 - 2526038 - | putative ATP synthase beta subunit TERM 2880 2526621 - 2526652 + g 71 -9.2 -3.5594 | overlap 2526649 ATCACATCGCTGGCC CCCGCCGCCAGGGC AATC GCCTGGGAGTCGGG TTTCACCAGTGGATT TERM 2881 2526659 - 2526696 + g 76 -7.9 -4.25104 | gap 1, overlap 2526649 2526662 GGAGTCGGGTTTCAC CAGT-GGATTAACCAGCC ACA GATTGGTTAATCCCATTG TTTTCATGGCACGGG TERM 2882 2526662 - 2526693 + g 70 -6 -4.25256 | gap 1, overlap 2526659 GTCGGGTTTCACCAG T-GGATTAACCAGCC ACA GATTGGTTAATCCCA TTGTTTTCATGGCAC TERM 2883 2526912 - 2526940 + G 79 -12.3 -3.02166 | opp_overlap 2526913, overlap 2526908 CATCCGATGCTGAAC ATCGCCGTGCGCG CAG CGCGCAAGGCGGG TAATTTAATTGCCAA TERM 2884 2526939 - 2526913 - g 87 -13.6 -3.04263 | opp_overlap 2526912 2526908 ATCCGATGCTGAACA TCGCCGTGCGCG CAG CGCGCAAGGCGG GTAATTTAATTGCCA suhB 2526894 - 2527697 + | inositol monophosphatase TERM 2885 2527699 - 2527734 + F 72 -8.9 -3.55548 | opp_overlap 2527701, overlap 2527730 CTCTGAAGCGTTAAT GACTCAGGCGGGTGA TATCAC TCACCCGCCTCCGCC TTTCAGGCGCTATTC SDY_2730 2527815 - 2528696 + | putative enzyme csiE 2528887 - 2530167 + | stationary phase inducible protein CsiE hcaT 2531298 - 2530159 - | putative 3-phenylpropionic acid transporter TERM 2886 2530704 - 2530681 - G 86 -11 -3.9009 | overlap 2530672 2530701 AACGCAGGCCAGAAA GCGCCAGTTC TGGC GAACCAGCGC CAACCACGCTGACCA SDY_2734 2531748 - 2531458 - | hypothetical protein SDY_2735 2531970 - 2532365 + | iso-IS1 ORF2 SDY_2737 2534109 - 2532697 - | hypothetical protein yphG 2536038 - 2534122 - | hypothetical protein TERM 2887 2534374 - 2534386 + g 95 -9.1 -5.06414 | AATCAAACTCGCCTG TCCGC ACT GCGGA TTTTTGTTCAGCGCA SDY_2739 2536411 - 2536016 - | iso-IS1 ORF2 yphH 2536864 - 2538063 + | putative NAGC-like transcriptional regulator TERM 2888 2538083 - 2538100 + T 95 -11.3 -4.58283 | opp_overlap 2538083 GCGATAACGTAGAAA GGCTTCC CGAA GGAAGCC TTTTTCAACAGATTA TERM 2889 2538100 - 2538083 - T 87 -11.3 -4.00066 | opp_overlap 2538083 GCGATAACGTAGAAA GGCTTCC CGAA GGAAGCC TTTTTCAACAGATTA glyA 2539379 - 2538126 - | serine hydroxymethyltransferase TERM 2890 2538865 - 2538881 + g 70 -5.1 -4.40333 | opp_overlap 2538865 TATGCAGAGAAGCCA CCGATAA TCA TTTTCGG TTTGTGTTCTTTGGC TERM 2891 2540147 - 2540131 - g 72 -5.7 -4.50661 | opp_overlap 2540133, overlap 2540133 AATCTATAACGAAAA CGCCAGC AAA GCCGGTG GTTGGGAAGGTACTC hmpA 2539706 - 2540896 + | nitric oxide dioxygenase glnB 2541279 - 2540941 - | nitrogen regulatory protein P-II 1 yfhA 2542674 - 2541340 - | putative 2-component transcriptional regulator TERM 2892 2542049 - 2542039 - G 72 -8.2 -3.74251 | overlap 2542040 GACAGCGCCAGTAAA CGCG CCA CGCG CATGACCAAACAGCT TERM 2893 2542274 - 2542304 + g 70 -11 -2.76815 | opp_overlap 2542269, overlap 2542251 2542250 2542273 CGGGTGACAATCGCC TCGCGCCAGCGTTC GTC GGTGGCTGGCGCGG ATTGTTCCAGCGCAT TERM 2894 2542402 - 2542377 - G 76 -4 -5.01811 | gap 1, overlap 2542378 TGAGGAAACTAAAAA CGCC-CTGCTG TGTTG CAGCAACGGCA TCGGGAATAGAACCA yfhG 2543377 - 2542664 - | hypothetical protein yfhK 2545032 - 2543542 - | putative 2-component sensor protein TERM 2895 2544172 - 2544182 + g 93 -8.2 -4.90266 | overlap 2544157 GCCCTCGCGCATACT CGCC AGT GGCG TTTTTAATTCATGAG TERM 2896 2545057 - 2545027 - G 100 -16.3 -2.91681 | opp_overlap 2545030 2545034, overlap 2545030 2545034 GGGGAAGTTCAGATA CAACAAAGCCGGG AATTA CCCGGCTTTGTTA TGGAATAAGGCGGTG TERM 2897 2545054 - 2545030 - G 100 -15.8 -3.60412 | opp_overlap 2545030 2545034, overlap 2545027 2545034 GAAGTTCAGATACAA CAAAGCCGGG AATTA CCCGGCTTTG TTATGGAATAAGGCG TERM 2898 2545030 - 2545054 + g 100 -15.8 -3.32844 | opp_overlap 2545027 2545030 2545034, overlap 2545034 GAAGTTCAGATACAA CAAAGCCGGG AATTA CCCGGCTTTG TTATGGAATAAGGCG TERM 2899 2545050 - 2545034 - R 93 -10.8 -4.42974 | opp_overlap 2545030 2545034, overlap 2545030 2545027 TTCAGATACAACAAA GCCGGG AATTA CCCGGC TTTGTTATGGAATAA TERM 2900 2545034 - 2545050 + r 90 -10.8 -4.32177 | opp_overlap 2545034 2545030 2545027, overlap 2545030 TTCAGATACAACAAA GCCGGG AATTA CCCGGC TTTGTTATGGAATAA TERM 2901 2545397 - 2545378 - R 73 -10 -3.31877 | overlap 2545373 AAATCAATAATTTAA GTGTCGCC AGGA AGCGACAC AGTAAACCACCCATT TERM 2902 2545454 - 2545437 - R 100 -8.4 -5.4492 | opp_overlap 2545437 TACAGACACAAAAAA GCTCCC TGAGTT GGGAGC TTATAATAGCGGTTG purL 2549420 - 2545533 - | phosphoribosylformylglycinamidine synthase TERM 2903 2548224 - 2548235 + g 74 -2.2 -5.14163 | overlap 2548218 CAGCTCTTCGCCGTT GTGG CTGT TCAC TTTTTCTTCATAAGT TERM 2904 2549538 - 2549527 - H 73 -4.4 -4.86731 | TGCGTGGAAATAAAA TCAC CATC GTGA ATTAGCAACGCGTGC TERM 2905 2549701 - 2549691 - H 75 -2.6 -5.1848 | opp_overlap 2549691 AACTAATTGAAAAAA TTAA AGA TTAA TTATCTGTTCATCGG yfhD 2549820 - 2551238 + | putative transglycosylase yfhC 2551771 - 2551235 - | tRNA-specific adenosine deaminase yfhB 2552431 - 2551796 - | hypothetical protein TERM 2906 2552427 - 2552405 - G 74 -2.6 -5.16572 | overlap 2552408 2552410 ATCTAAGTCAAAAAA CACCACACGA CGC TCATGAGTTG CCAAACCATACTCCT yfhH 2552640 - 2553488 + | putative DNA-binding transcriptional regulator SDY_2752 2554819 - 2554379 - | DNA-invertase TERM 2907 2554897 - 2554922 + H 79 -2.7 -5.40072 | gap 1, opp_overlap 2554897 2554911 2554916, overlap 2554910 2554920 TTCCATGGGAATACA CAGT-CATTATA AAA TAGAATGTACTG TTTTTTTAAAGAAAA TERM 2908 2554951 - 2554911 - H 79 -8 -4.48072 | gap 1, opp_overlap 2554897 2554910 2554920, overlap 2554897 2554916 ACAGTCATTATAAAA TAGAATGTACTGTTTTTTT AAAG AAAAAAACAGTACATTG-A GATATGATTTAGATC TERM 2909 2554947 - 2554916 - H 100 -14.8 -4.04187 | opp_overlap 2554897 2554910 2554920, overlap 2554897 2554911 CATTATAAAATAGAA TGTACTGTTTTTTT AAAG AAAAAAACAGTACA TTGAGATATGATTTA ipaH_6 2555309 - 2557135 + | invasion plasmid antigen TERM 2910 2557200 - 2557177 - T 100 -13.8 -4.58395 | opp_overlap 2557189 2557190, overlap 2557178 CTGACTCCGGAAAAA CGGAGGCCCG CCCC CGGGCCTCCC CGGATTCATCCGTTT TERM 2911 2557199 - 2557178 - T 100 -17.3 -3.34716 | opp_overlap 2557189 2557190, overlap 2557177 TGACTCCGGAAAAAC GGAGGCCCG CCCC CGGGCCTCC CCGGATTCATCCGTT SDY_2754 2558008 - 2557295 - | IS600 ORF2 SDY_2755 2558451 - 2558149 - | IS600 ORF1 SDY_2756 2558467 - 2558766 + | IS600 ORF2 SDY_2757 2559231 - 2558866 - | hypothetical protein TERM 2912 2559478 - 2559464 - R 76 -4.2 -5.06816 | ATGTGCGAATAAAAA GCCCAA GCA TTGCGC CAGAGACATATGTAT SDY_2758 2560319 - 2559444 - | putative tail fiber protein TERM 2913 2559836 - 2559824 - G 72 -4.7 -4.59081 | GAAATCCAGATAAAA GCCGG CAG CAGGC GTGATAAATGGGGCC SDY_2759 2560680 - 2560408 - | hypothetical protein TERM 2914 2560722 - 2560704 - R 73 -7.4 -4.13995 | overlap 2560707 TCGCGATAAATTAAA TCAGGAAG AAC CTTCCGGA GAGACGGGCCATTCA SDY_2760 2561203 - 2560844 - | hypothetical protein SDY_2761 2561398 - 2561793 + | iso-IS1 ORF2 yfiL 2562136 - 2561768 - | hypothetical protein insA 2562219 - 2562494 + | IS1 ORF1 insB 2562539 - 2562916 + | IS1 ORF2 aroF 2563123 - 2564193 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2915 2565030 - 2565016 - g 71 -2.8 -4.77165 | CCTGGCAGAAGAAAA TGTTCA GCT TGAGCA ACTTCTGGCGCTCTC tyrA 2564204 - 2565325 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 2916 2565332 - 2565361 + T 100 -15.1 -4.28361 | opp_overlap 2565330 2565329 2565326, overlap 2565333 CGCCAGTAATAATCC TGTGCCGGATGAT TCAC ATCATCCGGCACC TTTTCATCAGGTTGG TERM 2917 2565333 - 2565360 + T 100 -18.6 -3.16534 | opp_overlap 2565330 2565329 2565326, overlap 2565332 GCCAGTAATAATCCT GTGCCGGATGAT TCAC ATCATCCGGCAC CTTTTCATCAGGTTG pheA 2566528 - 2565368 - | bifunctional chorismate mutase/prephenate dehydratase TERM 2918 2566558 - 2566578 + r 87 -10.3 -4.03167 | opp_overlap 2566558 GTTATCAATAAAAAA GGCCCCCCG ATT TGGGAGGCC TTATTGTTCGTCTTC TERM 2919 2566578 - 2566558 - R 100 -11.8 -5.5112 | opp_overlap 2566558 GTTATCAATAAAAAA GGCCCCCC GATTT GGGAGGCC TTATTGTTCGTCTTC TERM 2920 2566753 - 2566738 - R 100 -11.8 -5.4505 | GCTGTCAACAAAAAA CGCGCC CGAA GGCGCG TTGGCGATACACTCA yfiA 2567120 - 2566779 - | translation inhibitor protein RaiA TERM 2921 2566826 - 2566859 + g 72 -6.7 -4.1822 | gap 1, overlap 2566827 CGTCTTTCACCGATG TTGCGGCACGACGTGC TTC GC-CTTTGTGCTGCAG TTTATTGAGCTGCCG TERM 2922 2567369 - 2567398 + r 89 -9.3 -4.59109 | overlap 2567371 AGCTCAAGGGCTGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 2923 2567371 - 2567396 + r 100 -16.3 -3.90762 | overlap 2567369 CTCAAGGGCTGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SDY_2769 2568713 - 2567511 - | IS4 orf TERM 2924 2568703 - 2568728 + g 73 -9.1 -3.61398 | opp_overlap 2568703 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 2925 2568728 - 2568703 - G 100 -9.8 -5.61596 | opp_overlap 2568703 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 2926 2568914 - 2568887 - H 86 -12.1 -3.61398 | CCTGTCTGGCAACAA TCGTGCCCATC TATATT GATGGACACGA ACGATGAATTCCCAG SDY_2770 2569222 - 2569524 + | IS600 ORF1 SDY_2771 2569665 - 2570378 + | IS600 ORF2 SDY_2772 2570452 - 2571057 + | hypothetical protein SDY_2773 2571250 - 2571927 + | putative tail fiber protein SDY_2774 2571971 - 2572381 + | insertion sequence 2 OrfA protein SDY_2775 2572405 - 2573133 + | IS2 ORF2 SDY_2776 2573525 - 2573130 - | iso-IS1 ORF2 SDY_2777 2573720 - 2574028 + | hypothetical protein yfiN 2574436 - 2575233 + | hypothetical protein yfiB 2575249 - 2575662 + | putative outer membrane protein TERM 2927 2575776 - 2575755 - T 100 -11.5 -5.82281 | opp_overlap 2575755 2575773 2575775 AAACAGATAAAAAAA GGGCCAGCC AATT GGCCAGCCC TTCTTAACAGGATGT rplS 2576154 - 2575807 - | 50S ribosomal protein L19 trmD 2576963 - 2576196 - | tRNA (guanine-N(1)-)-methyltransferase rimM 2577542 - 2576994 - | 16S rRNA-processing protein rpsP 2577809 - 2577561 - | 30S ribosomal protein S16 TERM 2928 2577865 - 2577833 - R 89 -9.2 -4.63218 | gap 1, opp_overlap 2577836, overlap 2577836 CTTGTGTGAATAAAA CAACCGGACCCCATC GAGG AACGGAGTCCGG-TG TCATATTAAAAGCCC TERM 2929 2577863 - 2577836 - R 100 -12 -4.43307 | opp_overlap 2577836, overlap 2577833 GTGTGAATAAAACAA CCGGACCCCATC GAGG AACGGAGTCCGG TGTCATATTAAAAGC ffh 2579307 - 2577946 - | signal recognition particle protein TERM 2930 2579568 - 2579554 - g 85 -2.7 -5.40072 | overlap 2579556 TCTGCTGCAAAAAAA CGGCG GCTGG CGGCG CATGGCTATTATTTC SDY_2785 2579399 - 2580265 + | hypothetical protein yfjD 2580376 - 2581572 + | hypothetical protein TERM 2931 2581579 - 2581604 + T 86 -14.7 -2.6563 | opp_overlap 2581579, overlap 2581576 2581575 GCGGAGTAACGAAAA CGGCCCGGCAT TCGC ATGCAGGGCCG TGAATTATTACGAAA TERM 2932 2581604 - 2581579 - T 100 -14.7 -4.45544 | opp_overlap 2581576 2581575 2581579 GCGGAGTAACGAAAA CGGCCCGGCAT TCGC ATGCAGGGCCG TGAATTATTACGAAA grpE 2582220 - 2581627 - | heat shock protein GrpE ppnK 2582343 - 2583221 + | inorganic polyphosphate/ATP-NAD kinase recN 2583307 - 2584968 + | recombination and repair protein smpA 2585117 - 2585458 + | hypothetical protein TERM 2933 2585490 - 2585506 + T 100 -12.3 -5.38951 | opp_overlap 2585490 AAAGACGTTAAAAAA GGTGCTC AAT GAGCACC TTTTTTCTGTCCGTT TERM 2934 2585506 - 2585490 - T 100 -12.3 -5.10077 | opp_overlap 2585490 AAAGACGTTAAAAAA GGTGCTC AAT GAGCACC TTTTTTCTGTCCGTT SDY_2791 2585810 - 2585520 - | hypothetical protein TERM 2935 2585636 - 2585654 + g 74 -3 -4.96773 | overlap 2585638 CGCTTAGTTTTGCCG GACGGC TGTAAAT GCCGAC TTTGTTTTTAGTTAA SDY_2792 2586276 - 2585800 - | hypothetical protein TERM 2936 2586799 - 2586787 - g 70 -5.5 -4.35524 | GGTGCAAAGTGAAAA TCGGC GTC GCCAA AGGTAAGAAACAGCA smpB 2586408 - 2586890 + | SsrA-binding protein TERM 2937 2587204 - 2587189 - T 72 -3.2 -5.08011 | overlap 2587191 AAAAGCCGCAAAAAA TAGTCG CAAA CGACGA AAACTACGCTTTAGC TERM 2938 2587598 - 2587613 + T 100 -10.4 -4.90869 | opp_overlap 2587598 CCTGGCGACATGAAA GCCCAC AGAT GTGGGC TTTTTCGTTGATGGT TERM 2939 2587613 - 2587598 - T 83 -10.4 -3.83026 | opp_overlap 2587598 CCTGGCGACATGAAA GCCCAC AGAT GTGGGC TTTTTCGTTGATGGT SDY_2794 2587840 - 2587628 - | hypothetical protein TERM 2940 2588578 - 2588599 + rH 72 -6.5 -4.26622 | overlap 2588579 2588590 2588591 GCGTTGGATCGGGAG TCGGGTCTG GTTT CGGATCCGG TTTTGGGTCTGGTTT TERM 2941 2589228 - 2589212 - RH 81 -12.3 -3.14132 | CCGTGGCGTCATTAA CGACAGG CTT CCTGTCG CGCCACTGACCGATG TERM 2942 2589382 - 2589392 + rH 74 -6.8 -4.27316 | CCTTTGTGGCGGAGT CCTG ACC CAGG TTTTGCATTGCCCCA SDY_2796 2590198 - 2589911 - | hypothetical protein SDY_2795 2589778 - 2590041 + | IS600 ORF1 SDY_2797 2590393 - 2590788 + | iso-IS1 ORF2 TERM 2943 2591345 - 2591335 - g 70 -5.4 -4.35524 | TCGTGAAATGGAAAA GGAA ATG TTCC TCGAGCTGAATGGCG SDY_2798 2590988 - 2591923 + | hypothetical protein TERM 2944 2592072 - 2592089 + T 80 -6.9 -4.63932 | AGTAGTTCGTTATGA GCGCCGA AATG TCGACGC TTTTATTCAAAAATG SDY_2799 2592629 - 2592117 - | hypothetical protein TERM 2945 2592420 - 2592440 + g 81 -11.2 -3.64488 | overlap 2592418 ATGTTTTATTCCTTT TACAGCCC CGTCC GGGCTGTA TGTTTTCACCAGCTT TERM 2946 2592546 - 2592603 + g 100 -13.6 -4.91977 | gap 2, opp_overlap 2592567 AACTGAATCACGCCA GGCTTTCTGCTCGTCGATAATCCGCCGG ATCT CAGGC-G-TTATCGGCAGGCGGAAAGCC TTTTGTGTTTTCATA SDY_2800 2593513 - 2592728 - | hypothetical protein TERM 2947 2593225 - 2593244 + g 78 -5.7 -4.81249 | gap 1 CCAGCTGGATAGCGA GCTCCGGC CACTC GCCG-AGC TTTTTACCTTTGAGG TERM 2948 2593322 - 2593333 + g 79 -4.4 -4.93696 | GCTGAAATCGATACG GAGA TAGT TCTC TTTTTCGTATTTGGA yfhL 2593728 - 2593988 + | hypothetical protein TERM 2949 2593985 - 2594015 + T 74 -7.1 -4.30995 | opp_overlap 2593985 CCACGCGGATAAAAT TTAATATTCTGCT CCTGA AGTAGAGTATTAA TTATTTTATAGGGAA TERM 2950 2594134 - 2594163 + T 83 -12.9 -3.11999 | gap 1, opp_overlap 2594134, overlap 2594125 TTTATAGTTATTAAA GGTGCGTCCGACTG GTT CAC-CGGACGCACC TTAAGTACGTTTCCT TERM 2951 2594163 - 2594134 - T 100 -15.1 -3.78022 | gap 1, opp_overlap 2594125 2594134 TTTATAGTTATTAAA GGTGCGTCCGACTG GTT CA-CCGGACGCACC TTAAGTACGTTTCCT SDY_2802 2594863 - 2594468 - | iso-IS1 ORF2 SDY_2803 2595058 - 2595351 + | hypothetical protein TERM 2952 2595441 - 2595389 - T 83 -10 -4.10552 | opp_overlap 2595397 2595403, overlap 2595390 2595397 2595403 CTGCACTAAATTAAA GTTACAAAGTAAAACCCCCGTTCC TTACC AGTTCGGGGGTTTTACTTTTTAAA GAGAACGGTATTATT TERM 2953 2595440 - 2595390 - T 82 -13.5 -3.05849 | opp_overlap 2595397 2595403, overlap 2595389 2595397 2595403 TGCACTAAATTAAAG TTACAAAGTAAAACCCCCGTTCC TTACC AGTTCGGGGGTTTTACTTTTTAA AGAGAACGGTATTAT TERM 2954 2595433 - 2595397 - T 95 -11.6 -4.03806 | opp_overlap 2595397 2595403, overlap 2595390 2595389 2595403 AATTAAAGTTACAAA GTAAAACCCCCGTTCC TTACC AGTTCGGGGGTTTTAC TTTTTAAAGAGAACG TERM 2955 2595397 - 2595433 + T 95 -10.9 -4.56597 | opp_overlap 2595397 2595390 2595389 2595403, overlap 2595403 AATTAAAGTTACAAA GTAAAACCCCCGTTC CTTACCA GTTCGGGGGTTTTAC TTTTTAAAGAGAACG TERM 2956 2595427 - 2595403 - T 72 -4.8 -4.62475 | opp_overlap 2595397 2595403, overlap 2595397 2595390 2595389 AGTTACAAAGTAAAA CCCCCGTTCC TTACC AGTTCGGGGG TTTTACTTTTTAAAG TERM 2957 2595403 - 2595427 + T 73 -4.1 -4.77757 | opp_overlap 2595403 2595397 2595390 2595389, overlap 2595397 AGTTACAAAGTAAAA CCCCCGTTC CTTACCA GTTCGGGGG TTTTACTTTTTAAAG acpS 2595838 - 2595458 - | 4'-phosphopantetheinyl transferase TERM 2958 2595696 - 2595714 + g 76 -8.1 -4.17089 | opp_overlap 2595680 2595696 CGTTTCGCCAGAAAA CGCACCG GCTGG TGGTGCG TTTTCCAAATTTCCC TERM 2959 2595714 - 2595696 - G 78 -7.4 -4.36914 | opp_overlap 2595696, overlap 2595680 CGTTTCGCCAGAAAA CGCACC GGCTGGT GGTGCG TTTTCCAAATTTCCC pdxJ 2596569 - 2595838 - | pyridoxal phosphate biosynthetic protein PdxJ recO 2597309 - 2596581 - | DNA repair protein RecO TERM 2960 2596732 - 2596742 + g 72 -6.8 -4.21275 | TCAGGAAATTCCCGT GCGT TTA ACGC TTTTAACTGCCTTCC era 2598226 - 2597321 - | GTP-binding protein Era TERM 2961 2597665 - 2597655 - G 75 -6.8 -4.41548 | TCAGACGCCATAAAA CGCT GTG AGCG ATCGGTGATGTAATC TERM 2962 2598134 - 2598145 + g 70 -5.8 -4.16284 | AGTGATGGAAATTTT CTGC CCCA GCAG TTTGTTCAACAATGT rnc 2598903 - 2598223 - | ribonuclease III TERM 2963 2599162 - 2599130 - R 100 -21.5 -4.07877 | opp_overlap 2599118 TTATCTCATAAATAA TTCACGTTGTCGCCA TAA CGGCGACAACGTGAA CGAAGATGAGCTATT lepB 2600150 - 2599176 - | lsignal peptidase I TERM 2964 2599712 - 2599728 + g 76 -9.5 -3.76373 | overlap 2599690 GTAAACCCACCGCGC GCTTGAT GTA ATCAAGC TTTGGATCTTCCGGA lepA 2601965 - 2600166 - | GTP-binding protein LepA TERM 2965 2600264 - 2600277 + g 74 -2.3 -5.07486 | overlap 2600262 TCTTACCTTCTTTCT GCTTC TGCA GCAGC TTTTTCTTACGGCTG TERM 2966 2602170 - 2602153 - R 91 -11.3 -4.32607 | GCAAAATGCAACAAA GCCAGTG AAAT CACTGGC TCGCGTCTTCCGAAG rseC 2602642 - 2602163 - | SoxR reducing system protein RseC rseB 2603595 - 2602639 - | periplasmic negative regulator of sigmaE TERM 2967 2603536 - 2603509 - G 77 -10.4 -3.61715 | CATCTGCTGTAATAA CGCCCCGGACGC AGGA GTGGCCGAGGCG TTAGCAGAGAATAAC rseA 2604245 - 2603595 - | anti-RNA polymerase sigma factor SigE TERM 2968 2603971 - 2603983 + g 78 -7.7 -4.43189 | opp_overlap 2603979, overlap 2603979 CACGGACGTACTTTC TGCCA GAA TGGCA TTTTCTGCCATTGAT rpoE 2604853 - 2604278 - | RNA polymerase sigma factor RpoE TERM 2969 2605284 - 2605262 - g 84 -3.5 -5.20222 | opp_overlap 2605283 ATTAAACAAAGAAAA TGAATACTC TCCCT GAACATTCA TGTGACGTGTTGATT nadB 2605261 - 2606883 + | L-aspartate oxidase TERM 2970 2606900 - 2606887 - T 75 -3.1 -5.1634 | gap 1 ATAAACAGATAAAAA GC-CTG GGT CAGTGC CGTATACGCTTCGGA yfiC 2607725 - 2606868 - | putative enzyme TERM 2971 2606984 - 2606958 - G 88 -12.4 -3.58269 | TAAGCGATCGCTAAA GCATTCTCCC GCCTTCG GGGAGAATGC CAGCAGGACCCGATG TERM 2972 2607643 - 2607630 - G 77 -5.9 -4.7254 | ACCTTGCAGGAAAAA CGGCG ATAG CACCG GGTGAGAACAATACC TERM 2973 2608174 - 2608163 - g 72 -4.4 -4.67943 | CTGCAATACATAAAA GAAG AGAA CTTC GATTGCCGCGCGGTT srmB 2607737 - 2609071 + | ATP-dependent RNA helicase SrmB TERM 2974 2609075 - 2609100 + T 100 -9.7 -4.82901 | opp_overlap 2609073, overlap 2609078 ACAGAAGAGTAATCT CAATGCCGGGT TTAA GCCCGGCATTA TTTTTATCCCGGCAA TERM 2975 2609078 - 2609097 + T 95 -11.4 -4.52873 | opp_overlap 2609073, overlap 2609075 GAAGAGTAATCTCAA TGCCGGGT TTAA GCCCGGCA TTATTTTTATCCCGG yfiE 2610030 - 2609104 - | putative transcriptional regulator LYSR-type TERM 2976 2609672 - 2609654 - G 74 -7.4 -4.07568 | opp_overlap 2609654, overlap 2609655 GCGCGTTGCCGAAAA CGCTGCAA CAC CTGCAGCA TTCGGTAAGAGAGCA TERM 2977 2609899 - 2609913 + g 70 -5 -4.57569 | AAAAGTCACCGTCGA TTGTGT ACA GCACAA TTTTTGCGAAGCTCG TERM 2978 2609934 - 2609914 - G 82 -11.3 -3.46602 | TTGTGTACAGCACAA TTTTTGCGA AGC TCGCAAAAA GGAACCCTCTTCCAC TERM 2979 2610016 - 2610033 + g 91 -2.7 -5.52909 | opp_overlap 2610017, overlap 2610017 2610032 GAAAATATCGAATTT AGAATGT AAAA ACATTCA TTTTTTTAAATGTTC SDY_2819 2610310 - 2610612 + | IS600 ORF1 SDY_2820 2610753 - 2611466 + | IS600 ORF2 yfiK 2611478 - 2611867 + | hypothetical protein TERM 2980 2611844 - 2611856 + T 72 -4.8 -4.70583 | CTGCTGCTGATCTAT TGCG CGGTA CGCA TTTTCTATTAATGAA TERM 2981 2611877 - 2611900 + T 100 -16.8 -3.22884 | opp_overlap 2611877, overlap 2611869 TATTAATGAAAAAAA GCGGAAGAGG TCGC CCTCTTCCGC TTAGTAACTTGCTAC TERM 2982 2611900 - 2611877 - T 100 -16.8 -5.65513 | opp_overlap 2611869 2611877 TATTAATGAAAAAAA GCGGAAGAGG TCGC CCTCTTCCGC TTAGTAACTTGCTAC yfiD 2612306 - 2611923 - | autonomous glycyl radical cofactor GrcA TERM 2983 2612208 - 2612228 + g 70 -3.9 -4.70659 | opp_overlap 2612198, overlap 2612210 AAAACCTGCTTTCGC AACGATGCA ACG TGCTTCGTC TTTTTCGCTGTCCAG TERM 2984 2612450 - 2612434 - H 77 -3.7 -5.24551 | TTAAATCAATAAAAA CCACA CATCGAT TGTGG TCGCAAATGGATTTT TERM 2985 2613072 - 2613089 + G 88 -5.5 -5.18726 | AGCCTGATTAACCAG CATCGCG AAGG CGTGGTG TTTTTGTTGTGGGGA ung 2612610 - 2613299 + | uracil-DNA glycosylase TERM 2986 2613340 - 2613313 - T 95 -13.4 -4.0896 | opp_overlap 2613311 2613314 2613337 2613339, overlap 2613314 AAATTTGCGGGAAAA TGCCGGATGGCA GAGT TGCCACCCGGCT GATTTATCAGGCTTT TERM 2987 2613339 - 2613314 - T 100 -16.9 -3.04894 | opp_overlap 2613311 2613314 2613337, overlap 2613313 AATTTGCGGGAAAAT GCCGGATGGCA GAGT TGCCACCCGGC TGATTTATCAGGCTT TERM 2988 2613314 - 2613339 + T 88 -14.7 -3.0169 | opp_overlap 2613314 2613313, overlap 2613311 2613337 AATTTGCGGGAAAAT GCCGGATGGCA GAGT TGCCACCCGGC TGATTTATCAGGCTT yfiF 2614384 - 2613347 - | putative methyltransferase TERM 2989 2614183 - 2614171 - G 71 -9.1 -3.53012 | opp_overlap 2614151 CCGGCGCGCGGGAAA CCGTG CGC CACGG CGAATCTTCCCACTT trxC 2614591 - 2615010 + | thioredoxin 2 TERM 2990 2615017 - 2615037 + F 95 -11.1 -4.50976 | TCTCTTTAATCTTAC CGGGGCGCA TCT TGTGTCCCG TTTTCTCCTCTGCGA TERM 2991 2615050 - 2615060 + F 70 -2.4 -5.02476 | overlap 2615058 CCGTTTTCTCCTCTG CGAC AAT GGCG TTTTTTCGACGCTCT TERM 2992 2615112 - 2615137 + G 70 -3.9 -4.71426 | overlap 2615115 CTCCAGTTACGCGCC GAGCGTATTGC GCGC GCAACACGTCC TTTTCTTGCTCGCGG TERM 2993 2615292 - 2615276 - g 72 -10.1 -3.3782 | opp_overlap 2615275 2615273 CACCGAGCCAATGAA GCCCAGT AAT ACCGGGC GTCTGATTGCTGATA yfiP 2615055 - 2615777 + | hypothetical protein TERM 2994 2616219 - 2616261 + G 70 -5.5 -4.42806 | overlap 2616204 2616215 CTGGCAAGGTCTGAA TGCCAGCTTTTCGCCTGTG CCGAT TAAACGCGGCAAGCTGGCG TTTATTTCACAATCG yfiQ 2615809 - 2618469 + | hypothetical protein pssA 2618580 - 2619938 + | phosphatidylserine synthase TERM 2995 2619945 - 2619961 + F 100 -9.4 -5.04249 | opp_overlap 2619945 ATCCTGTAATCACAA CCCCGT CCTGT ACGGGG TTTGTTTTTTGGAGG TERM 2996 2619961 - 2619945 - f 72 -9.4 -3.51032 | opp_overlap 2619945 ATCCTGTAATCACAA CCCCGT CCTGT ACGGGG TTTGTTTTTTGGAGG yfiM 2620011 - 2620307 + | hypothetical protein kgtP 2621602 - 2620304 - | alpha-ketoglutarate transporter TERM 2997 2621857 - 2621845 - R 70 -9.1 -3.4072 | overlap 2621847 TATGTGGGAGTATAA GACGC GCA GCGTC GCATCAGGCATTTTT TERM 2998 2621883 - 2621915 + r 95 -11.4 -4.50627 | gap 1, opp_overlap 2621890, overlap 2621890 TTTTTTTGCACCAAC GCAAAAAGGCCATCC GTCA GGATGGCCTTTC-GC TTTATTTGATGCCTG TERM 2999 2621890 - 2621909 + r 100 -13.6 -3.96542 | opp_overlap 2621890, overlap 2621883 GCACCAACGCAAAAA GGCCATCC GTCA GGATGGCC TTTCGCTTTATTTGA TERM 3000 2621909 - 2621890 - R 100 -13.6 -4.7629 | opp_overlap 2621883 2621890 GCACCAACGCAAAAA GGCCATCC GTCA GGATGGCC TTTCGCTTTATTTGA TERM 3001 2622056 - 2622077 + r 74 -8.7 -3.91196 | opp_overlap 2622047 GCAAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 3002 2624542 - 2624554 + r 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 3003 2625313 - 2625327 + r 72 -5.7 -4.41177 | overlap 2625304 2625301 GTATCAGTCTGCTTC GCAAG ACTGC CTTGC TTTTCACTTTCTATC TERM 3004 2627337 - 2627364 + r 80 -12.8 -2.96695 | opp_overlap 2627314 2627342, overlap 2627342 GTCTAACTTATAGAC AAAAACGAGCCC CGAA GGGCTCGTTTTA TCATTTACTGGACGG TERM 3005 2627359 - 2627342 - R 100 -12.7 -5.04597 | opp_overlap 2627337 2627342, overlap 2627314 ACTTATAGACAAAAA CGAGCCC CGAA GGGCTCG TTTTATCATTTACTG TERM 3006 2627342 - 2627359 + r 100 -12.7 -4.63172 | opp_overlap 2627314 2627342, overlap 2627337 ACTTATAGACAAAAA CGAGCCC CGAA GGGCTCG TTTTATCATTTACTG clpB 2629942 - 2627369 - | protein disaggregation chaperone TERM 3007 2629138 - 2629118 - G 72 -7.5 -3.86822 | opp_overlap 2629118 TAATTCGTCGATAAA CAGGATGAC GTT GCCTTCCTG TTTGGCAAGATCGTT yfiH 2630803 - 2630072 - | hypothetical protein rluD 2631780 - 2630800 - | 23S rRNA pseudouridine synthase D TERM 3008 2631815 - 2631825 + H 74 -8.2 -3.8766 | ATCGTTGGGGTTTTA CGGC TTT GCCG TTTAATATAGTGTGC SDY_2838 2631915 - 2632652 + | outer membrane protein assembly complex subunit YfiO TERM 3009 2632692 - 2632721 + T 89 -9.3 -4.59109 | overlap 2632694 AGCCCTTGAGCTGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 3010 2632694 - 2632719 + T 100 -16.3 -3.90762 | overlap 2632692 CCCTTGAGCTGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SDY_2839 2634049 - 2632703 - | IS4 orf TERM 3011 2634064 - 2634039 - G 100 -9.8 -5.61596 | opp_overlap 2634039 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 3012 2634039 - 2634064 + g 73 -9.1 -3.61398 | opp_overlap 2634039 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 3013 2634354 - 2634336 - g 71 -3.1 -4.77567 | gap 1, overlap 2634337 2634338 AGCCGGATAATAAAA TCCCG-GC TCCG GCACAGGA ACCAGAGCAGATAAA SDY_2840 2634188 - 2634493 + | hypothetical protein SDY_2841 2634493 - 2634813 + | ISSfl4 ORF2 SDY_2842 2635881 - 2635051 - | IS600 ORF2 SDY_2843 2636324 - 2636022 - | IS600 ORF1 TERM 3014 2636455 - 2636423 - R 84 -8.6 -4.58466 | gap 1, overlap 2636415 2636418 GGCAGAAGGACAAAA GCCCCGT-AGTTAAT TTTC ATTAACCCACGAGGC CTCTGCATGTCTAGT SDY_2844 2637271 - 2636660 - | IS911 ORF2 TERM 3015 2636691 - 2636708 + g 100 -14.1 -4.10161 | opp_overlap 2636685 AAGTAGCAACCTGGA GGCGGGC GCAG GCCCGCC TTTTCAGGGCTGATG TERM 3016 2636840 - 2636851 + g 77 -5.8 -4.63218 | opp_overlap 2636836 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG TERM 3017 2637192 - 2637212 + g 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_2845 2637600 - 2637298 - | IS911 ORF1 SDY_2846 2638437 - 2637670 - | hypothetical protein SDY_2847 2638937 - 2638542 - | iso-IS1 ORF2 SDY_2848 2639802 - 2639272 - | hypothetical protein insB 2640216 - 2639839 - | IS1 ORF2 insA 2640536 - 2640261 - | IS1 ORF1 TERM 3018 2642161 - 2642173 + H 70 -9.1 -3.30124 | overlap 2642170 TCCTATGCCGGAGGC GACGC TGT GCGTC TTGTCCGGCCTACGG gabP 2642377 - 2643777 + | gamma-aminobutyrate transporter TERM 3019 2644003 - 2644026 + G 70 -6.8 -4.07568 | gap 1, overlap 2644005 ATCGGGTGGCGTCTA TGTCAGAGCAG GAG CTGCTC-GATA TTTTCGACGCCCGCG TERM 3020 2644368 - 2644393 + G 73 -11.8 -2.56596 | opp_overlap 2644351, overlap 2644364 CTGACTGCGGCGGTA CTGGCGCGAG ATACCG CGCGCGCCAG TGAGTTAATGCGCCA ygaE 2643798 - 2644460 + | DNA-binding transcriptional regulator CsiR ygaU 2644910 - 2644461 - | hypothetical protein TERM 3021 2644488 - 2644510 + g 100 -10.6 -4.63184 | overlap 2644489 2644505 AATACGCAACACTTG CCCCGGATAA ATT TTATCCGGGC TTTTTAGCATCGGTT TERM 3022 2644489 - 2644509 + g 95 -14.1 -3.37188 | overlap 2644488 2644505 ATACGCAACACTTGC CCCGGATAA ATT TTATCCGGG CTTTTTAGCATCGGT TERM 3023 2644526 - 2644540 + g 71 -2.8 -4.77567 | overlap 2644528 TTTTTAGCATCGGTT TATTCG CTT CGAAGA TTTTATTGTACAGAT TERM 3024 2644978 - 2644959 - R 81 -12.8 -3.29649 | AGTGTAGCAGAGGAA CGCGGCGC GTTA ACGCCGCG GGGGTGAGCACAGGT SDY_2856 2645152 - 2644994 - | hypothetical protein TERM 3025 2645203 - 2645191 - H 78 -6.3 -4.58395 | CTCATTGTTTAAAAA GAGAT TTT ATCTC TTAAGCGTAGTAATT SDY_2857 2645335 - 2645634 + | hypothetical protein ygaP 2645644 - 2646162 + | hypothetical protein stpA 2646619 - 2646215 - | DNA binding protein, nucleoid-associated TERM 3026 2646305 - 2646325 + g 81 -8.3 -4.32857 | GGTCCAGGTTTTAGT TTCACCGTT AAC ATCGGTGAA TTTATATTTCGCCGG TERM 3027 2646335 - 2646352 + g 83 -6.2 -5.00616 | overlap 2646334 GGTGAATTTATATTT CGCCGG ACGCGG CTGGCG TTTTTTACCAGCGCG TERM 3028 2646923 - 2646899 - H 78 -5.1 -4.92791 | opp_overlap 2646908 TATAACAGAATAAAA GAAAACATC CATCACT GATGCTTTC TGCTGTTAATGTACA SDY_2860 2647288 - 2647737 + | hypothetical protein TERM 3029 2647748 - 2647770 + F 93 -14.9 -3.42283 | overlap 2647746 CCTGACTCTTCTTTT CGCGACTGG CATCA CCAGTCGCG TCTTTAACTGGCTTC SDY_2861 2648157 - 2648426 + | iso-IS1 ORF2 ygaC 2648893 - 2648528 - | hypothetical protein TERM 3030 2648715 - 2648725 + g 70 -5.4 -4.43681 | GGTTCAGCCAGTGTC GAAC TGC GTTC TTTTAATGTTGGATG ygaM 2649033 - 2649374 + | hypothetical protein TERM 3031 2649520 - 2649500 - T 95 -16.9 -2.63102 | opp_overlap 2649500 ACCAGTCTTATAGGA CCCCGAAGC CTG GCTTCGGGG TTATTAATTTAAAGC TERM 3032 2649500 - 2649520 + T 100 -16.9 -3.89354 | opp_overlap 2649500 ACCAGTCTTATAGGA CCCCGAAGC CTG GCTTCGGGG TTATTAATTTAAAGC SDY_2864 2650858 - 2649524 - | putative transcriptional regulator TERM 3033 2650522 - 2650500 - G 72 -5.6 -4.564 | gap 1, overlap 2650502 AATGCCAAATCAAAA CG-CGTCTG GGTACG CAGACGGCG GCCCATCACCCGCGC SDY_2865 2650946 - 2651377 + | hypothetical protein nrdH 2651587 - 2651832 + | glutaredoxin-like protein nrdI 2651829 - 2652239 + | ribonucleotide reductase stimulatory protein TERM 3034 2653506 - 2653533 + G 95 -14.2 -3.54129 | gap 1, opp_overlap 2653521, overlap 2653506 ATTCCCCCGATTTTG CC-CGCACGGTAG AGA CTGCCGTGCGCGG TTTAACGGCAGTATC TERM 3035 2653506 - 2653532 + G 90 -14.4 -2.72263 | opp_overlap 2653521, overlap 2653506 ATTCCCCCGATTTTG CCCGCACGGTAG AGA CTGCCGTGCGCG GTTTAACGGCAGTAT nrdE 2652251 - 2654101 + | ribonucleoside-diphosphate reductase 2, alpha subunit nrdF 2654366 - 2655334 + | ribonucleotide-diphosphate reductase subunit beta insB 2655705 - 2655328 - | IS1 ORF2 insA 2656025 - 2655750 - | IS1 ORF1 proV 2656201 - 2657226 + | ATP-binding component of transport system for glycine, betaine and proline proW 2657219 - 2658283 + | glycine betaine transporter membrane protein TERM 3036 2658293 - 2658311 + T 85 -12.4 -3.31144 | AAGTAACTCTGCACT TGCCCGGT GAC GCCGGGCA TTATCACCCTGCCCA SDY_2874 2658791 - 2658396 - | iso-IS1 ORF2 TERM 3037 2660116 - 2660147 + H 75 -10 -3.48924 | opp_overlap 2660126, overlap 2660117 AAGTAATTTTTATTC GGGCGGATAAGGCG TTTA CGCCGCATCCGCCG TTCTGTACACAATGC TERM 3038 2660117 - 2660146 + H 81 -13.5 -2.6914 | opp_overlap 2660126, overlap 2660116 AGTAATTTTTATTCG GGCGGATAAGGCG TTTA CGCCGCATCCGCC GTTCTGTACACAATG SDY_2876 2660298 - 2661482 + | permease TERM 3039 2661948 - 2661934 - g 77 -7 -4.4874 | opp_overlap 2661935, overlap 2661935 TGCAAAAATCGAAAA CCGCCC TGT GGGCGT TTGGCCTGACGGATG TERM 3040 2661935 - 2661947 + G 81 -10.5 -3.60098 | opp_overlap 2661934 2661935 GCAAAAATCGAAAAC CGCCC TGT GGGCG TTTGGCCTGACGGAT TERM 3041 2661947 - 2661935 - g 76 -10.5 -3.28159 | opp_overlap 2661935, overlap 2661934 GCAAAAATCGAAAAC CGCCC TGT GGGCG TTTGGCCTGACGGAT SDY_2877 2661606 - 2662343 + | hypothetical protein TERM 3042 2662570 - 2662580 + G 70 -6.8 -4.03234 | GTCGGCTTCGCGGTA CTGG GTG CCAG TTTCTATAAAACACG ygaH 2662333 - 2662668 + | hypothetical protein emrR 2662759 - 2663289 + | transcriptional repressor MprA TERM 3043 2663337 - 2663360 + F 100 -12.5 -4.56597 | opp_overlap 2663336 2663335 2663333 2663353 AAAGAAAAAATGACT GGCCAGCAT CGCAAC ATGCTGGCC TTTTTGGCAAGCAGG TERM 3044 2663827 - 2663816 - g 86 -5.8 -5.03314 | TTGAGGTGCAAAAAA TCGC CCTC GCGA AAGCACAAAGCGACT emrA 2663416 - 2664588 + | multidrug resistance secretion protein TERM 3045 2666154 - 2666169 + F 100 -10.4 -5.34309 | opp_overlap 2666154 ACTAAGGTTGTCAAA GGGAGC TGCG GCTCCC TTTTTATTTGCTCAT TERM 3046 2666169 - 2666154 - f 79 -10.4 -3.55801 | opp_overlap 2666154 ACTAAGGTTGTCAAA GGGAGC TGCG GCTCCC TTTTTATTTGCTCAT TERM 3047 2666263 - 2666280 + F 71 -7.7 -3.90608 | overlap 2666264 TCACCATTAACCGGT TCTGAGC ATTC GCTCAGG TTGTTAATTCTCTTT TERM 3048 2666544 - 2666533 - g 74 -2.2 -5.03994 | GTGCACACAGAAAAA CTCG ACGG CGAA AATAACTGCCTTAAC SDY_2882 2666401 - 2667108 + | hypothetical protein TERM 3049 2667493 - 2667526 + G 72 -8.9 -3.78775 | gap 1 GTCTGCATGGGTTAC CGCTATGGTTACTGGA ACG TCCGG-AACCGGAGCG TTTGCTGCTCACGGC SDY_2883 2667174 - 2668217 + | hypothetical protein TERM 3050 2668219 - 2668251 + T 84 -8.4 -4.65916 | gap 1, opp_overlap 2668223, overlap 2668222 2668223 TGATTGAAAGGTAAA AAAACCGGGC-GGTG GTGT CACCTGCCCGGCTTC TTTTGTTCCACTGAC TERM 3051 2668222 - 2668248 + T 90 -10.1 -4.43909 | gap 1, opp_overlap 2668223, overlap 2668219 2668223 TTGAAAGGTAAAAAA ACCGGGC-GGTG GTGT CACCTGCCCGGC TTCTTTTGTTCCACT TERM 3052 2668223 - 2668247 + T 86 -13.6 -3.25261 | gap 1, opp_overlap 2668223, overlap 2668222 2668219 TGAAAGGTAAAAAAA CCGGGC-GGTG GTGT CACCTGCCCGG CTTCTTTTGTTCCAC TERM 3053 2668247 - 2668223 - T 100 -13.6 -5.58209 | gap 1, opp_overlap 2668222 2668219 2668223 TGAAAGGTAAAAAAA CCGGGC-GGTG GTGT CACCTGCCCGG CTTCTTTTGTTCCAC ygaG 2668781 - 2668266 - | S-ribosylhomocysteinase TERM 3054 2668900 - 2668917 + r 100 -11.3 -5.58522 | CAGAGATGAAATTTT GGCCACT CACG AGTGGCC TTTTTCTTTTCTGTC gshA 2670487 - 2668931 - | glutamate--cysteine ligase SDY_2886 2670987 - 2670655 - | hypothetical protein yqaB 2671550 - 2670984 - | fructose-1-phosphatase TERM 3055 2671867 - 2671885 + r 71 -9.5 -3.14211 | overlap 2671884 GGATTACTCGCCTCG CGGCTCG CCCTT CGGGCCG TTGCTAAAGCAACGT TERM 3056 2671884 - 2671899 + r 70 -9 -3.42996 | overlap 2671867 GCTCGCCCTTCGGGC CGTTGC TAAA GCAACG TTATCCTCCCTGGTG TERM 3057 2672140 - 2672158 + r 71 -9.5 -3.14211 | overlap 2672157 GGATTACTCGCCTTG CGGCTCG CCCTT CGGGCCG TTGCTAAAGCAACGT TERM 3058 2672157 - 2672172 + r 70 -9 -3.42996 | overlap 2672140 GCTCGCCCTTCGGGC CGTTGC TAAA GCAACG TTATCCTCCCTGGTG csrA 2672918 - 2672733 - | carbon storage regulator alaS 2675783 - 2673153 - | alanyl-tRNA synthetase TERM 3059 2675859 - 2675811 - R 74 -8.3 -3.96387 | gap 3, opp_overlap 2675814, overlap 2675813 ATCAAGCTAACGAAA TATC-GCCACCAGCTCCGGCGTGT CTTA AC-CGCCGG-GCTGGTAACTGAAA AGTGGGAATAAGATA TERM 3060 2675857 - 2675813 - R 82 -10.9 -3.56675 | gap 3, opp_overlap 2675814, overlap 2675811 CAAGCTAACGAAATA TC-GCCACCAGCTCCGGCGTGT CTTA AC-CGCCGG-GCTGGTAACTGA AAAGTGGGAATAAGA recX 2676411 - 2675911 - | recombination regulator RecX TERM 3061 2676459 - 2676442 - R 88 -8.3 -4.86862 | opp_overlap 2676441 CTTAAAAAAGCAAAA GGGCCGC AGAT GCGCCCC AGGTTTTGCTGATAA recA 2677715 - 2676654 - | recombinase A TERM 3062 2677456 - 2677495 + g 100 -14.4 -4.08064 | gap 1, opp_overlap 2677440, overlap 2677457 GCACAGGTTTTACCT TCACGCTG-CGCTGCGG CGATCAC CTGCAGCGTCAGCGTGG TTTTACCGGAAGATT TERM 3063 2677457 - 2677494 + g 95 -15.7 -3.04517 | gap 1, opp_overlap 2677440, overlap 2677456 CACAGGTTTTACCTT CACGCTG-CGCTGCGG CGATCAC CTGCAGCGTCAGCGTG GTTTTACCGGAAGAT ygaD 2678292 - 2677795 - | competence damage-inducible protein A mltB 2679523 - 2678438 - | murein hydrolase B TERM 3064 2679993 - 2680006 + G 82 -8.1 -4.45771 | overlap 2680001 GTTACCTGCTGCTAC CGTGC ATTG GCACG TTTGTCTTTTGCAAT srlA 2679779 - 2680342 + | PTS system, glucitol/sorbitol-specific IIC component TERM 3065 2680705 - 2680686 - T 77 -3.6 -5.093 | CGTAAAAGAAGAAAA CATCAC TGTAGTGG GTGATG CGACACCACACCCCT SDY_2900 2681508 - 2681170 - | iso-IS1 ORF2 srlB 2682083 - 2682454 + | glucitol/sorbitol-specific PTS system component IIA srlD 2682458 - 2683237 + | sorbitol-6-phosphate dehydrogenase TERM 3066 2683269 - 2683242 - f 74 -10.7 -3.14564 | gap 1, overlap 2683262 TGATGTTCTGATCAA CAGCGGAGATCC GTTAA GGATCTCCG-TG AGACTAATAGAATGC TERM 3067 2683308 - 2683282 - f 100 -21 -3.73982 | GTGAGACTAATAGAA TGCCTGATGCGC TAC GCGCATCAGGCA TACAGGACTTCCGCC gutM 2683343 - 2683702 + | DNA-binding transcriptional activator GutM TERM 3068 2684463 - 2684439 - g 78 -10.8 -3.55444 | opp_overlap 2684461 TTTGCAGTCTTGAAA GCGTCGATAA GCTAA TTACCGACGC AGGTATCGATCCGGC srlR 2683769 - 2684542 + | DNA-bindng transcriptional repressor SrlR TERM 3069 2684733 - 2684746 + G 100 -3.7 -5.64274 | overlap 2684734 GCAACACTTGCCAGT ACCGG CACA CCGGC TTTTTTTGTCCATCC gutQ 2684535 - 2685500 + | D-arabinose 5-phosphate isomerase ygaA 2687011 - 2685497 - | anaerobic nitric oxide reductase transcription regulator TERM 3070 2687297 - 2687283 - g 84 -7.8 -4.68724 | overlap 2687284 GCACGGAATATAAAA CGCTGC GCG GCAGCA GCTACAACAGCTACC SDY_2907 2687198 - 2688637 + | anaerobic nitric oxide reductase flavorubredoxin TERM 3071 2688809 - 2688830 + G 77 -12.3 -2.72043 | overlap 2688808 AACGTGCCGATGACC TTACCCGCC AGAC GGCGGGTGA ATTTGCCGAGCAGTT ygbD 2688634 - 2689767 + | nitric oxide reductase TERM 3072 2689821 - 2689788 - T 83 -9.5 -4.08216 | opp_overlap 2689795 2689796 2689798 2689808, overlap 2689789 CTACTGTGCCCAAAA TGTCGGATGCGACGC TGGC GCGTCTTATCCGACC TACGGGGTGCGCATG TERM 3073 2689820 - 2689789 - T 82 -13 -3.04715 | opp_overlap 2689795 2689796 2689798 2689808, overlap 2689788 TACTGTGCCCAAAAT GTCGGATGCGACGC TGGC GCGTCTTATCCGAC CTACGGGGTGCGCAT TERM 3074 2689808 - 2689854 + T 87 -11 -3.86897 | opp_overlap 2689789 2689788, overlap 2689795 2689798 GATGCGACGCTGGCG CGTCTTATCCGACCTACG GGGTGCGCATG TGTAGGCCGGATAAGGCG TTTATGCCGCATCCG hypF 2692151 - 2689899 - | transcriptional regulatory protein TERM 3075 2690498 - 2690484 - G 90 -11.4 -3.86346 | opp_overlap 2690492 2690493 CCACTCCGGCACAAA GCGCAG GCA CTGCGC CAGCAGGTTTCGCCA TERM 3076 2692130 - 2692140 + g 77 -3.2 -5.09426 | opp_overlap 2692117 TACGCAGTTGGACAC CGCA AGA TGTG TTTTTTGACATTGAG TERM 3077 2692316 - 2692330 + r 93 -9.2 -4.85599 | opp_overlap 2692313 2692315 TTTTTAGAACATCAG CGCCGT ACG GCGGCG TTTTTCTGCGCTCAG ascG 2693725 - 2692712 - | ascBF operon repressor TERM 3078 2693356 - 2693326 - G 70 -9.8 -3.17688 | overlap 2693327 CAATGATGTCATCAA TTTCATCCACGCTT AAA AAGCGCGGATAAAT CATAATGGCGTCGCA TERM 3079 2693355 - 2693327 - G 80 -13.3 -2.50291 | overlap 2693326 AATGATGTCATCAAT TTCATCCACGCTT AAA AAGCGCGGATAAA TCATAATGGCGTCGC TERM 3080 2694530 - 2694553 + H 72 -5.2 -4.66318 | opp_overlap 2694512, overlap 2694516 2694532 GCTGGCGATTGCCAT CGCGGGTGTG CTGG TACATCCGAG TTTTATTGAACTAAT TERM 3081 2695617 - 2695628 + G 84 -3.6 -5.29782 | GCGCTGGAGAAAGAT CGGG AAAA CCTG TTTTTTATCAATGTG ascB 2694840 - 2696264 + | cryptic 6-phospho-beta-glucosidase SDY_2913 2696864 - 2696379 - | hypothetical protein TERM 3082 2696569 - 2696579 + g 74 -8.2 -3.88787 | opp_overlap 2696551 2696550 ACGCCAACCGGCATT GCCG CAA CGGC TTTGTCGAACTCTGC hycI 2697501 - 2697034 - | hydrogenase 3 maturation protease TERM 3083 2697357 - 2697367 + g 70 -6.8 -4.14243 | GCAGTTCGCGGATAG CGAC AAT GTCG TTTTCCGGTGCGCTA hycH 2697904 - 2697494 - | HycH hycF 2699209 - 2698667 - | formate hydrogenlyase complex iron-sulfur subunit TERM 3084 2698776 - 2698823 + g 74 -9.9 -3.51934 | gap 1, overlap 2698776 2698778 2698779 TCGCGGTGGTTTTCC GCGCGGCTGTCGCCATTGTGCT TAAGC AGCGCAATGGCG-TAGTCGATC TCTTTCTGGACGGCG TERM 3085 2698778 - 2698821 + g 76 -11.1 -3.3353 | gap 1, overlap 2698776 2698776 2698779 GCGGTGGTTTTCCGC GCGGCTGTCGCCATTGTGCT TAAGC AGCGCAATGGCG-TAGTCGA TCTCTTTCTGGACGG TERM 3086 2698779 - 2698820 + g 90 -14.6 -2.59797 | gap 1, overlap 2698778 2698776 2698776 CGGTGGTTTTCCGCG CGGCTGTCGCCATTGTGCT TAAGC AGCGCAATGGCG-TAGTCG ATCTCTTTCTGGACG hycE 2700928 - 2699219 - | large subunit of hydrogenase 3 hycD 2701755 - 2700946 - | membrane-spanning protein of hydrogenase 3 hycB 2704348 - 2703737 - | small subunit of hydrogenase-3, iron-sulfur protein TERM 3087 2704199 - 2704216 + g 71 -2.7 -4.86621 | gap 1, opp_overlap 2704201, overlap 2704201 2704202 TTCACAGTGGTGACA GAG-CTGC GGC GCAGATTC TTTTTCATTCAGCAT TERM 3088 2704424 - 2704386 - R 79 -8.3 -4.2558 | gap 1 CATTTTTGACGAAAA CATGCCGATGAAATGTCA TTTT CGACACT-CATCGACACG CCCATCCCCAAACAG TERM 3089 2704451 - 2704437 - R 82 -11.4 -3.57263 | opp_overlap 2704449 ACGCCCATCCCCAAA CAGGCG TAA CGCCTG CAAAACGGGCAAAGC hycA 2704934 - 2704473 - | formate hydrogenlyase regulatory protein HycA hypA 2705146 - 2705496 + | hydrogenase nickel incorporation protein hypB 2705500 - 2706372 + | hydrogenase nickel incorporation protein HypB TERM 3090 2706491 - 2706516 + G 72 -9.7 -3.28497 | overlap 2706485 AAACGGTCAGCCGCG CGTGGGCCAGT GGGT ACTGGTACACG TTGGCTTTGCCATGA hypC 2706363 - 2706635 + | hydrogenase isoenzymes formation protein TERM 3091 2706984 - 2706974 - g 72 -6.8 -4.18018 | CTGTTGCAGGCAAAA GCAC GCG GTGC CGATGTGCGCATCGT TERM 3092 2707278 - 2707311 + G 82 -11.7 -3.54459 | CCTACAATTTTATCG CCAGCGATTTTCAGC GTCC GCTGGTGGTCGCTGG TTTCGAACCCCTTGA hypD 2706635 - 2707756 + | pleiotrophic effects on 3 hydrogenase isozymes hypE 2707795 - 2708763 + | hypothetical protein TERM 3093 2708803 - 2708819 + T 76 -9.4 -3.72576 | AGTCAATGATCTTTT GCACCG CTTTA CGGTGC TTTCCTGGAAGAACA TERM 3094 2708918 - 2708934 + T 73 -10.1 -3.35775 | overlap 2708917 CAGCAGCCCGATCTG GCCTCGC TGT GTGAGGC TCTTTCGCAACTGGT TERM 3095 2709005 - 2708953 - T 95 -14.4 -3.60792 | gap 2, opp_overlap 2708964 2708966 2709001 TTCGCAACTGGTAAA GAGTTCTGCGCTCGCCGACAACGC GGCTATT GTGTTGT-GGCAAGCGCAGA-CTC AACGTGCGTCTTATT TERM 3096 2710421 - 2710409 - T 81 -3.3 -5.44119 | opp_overlap 2710409, overlap 2710410 GCGATCTGAAAAAAA TGGTC GCC GACCG TGAGTTCCGTAGCGA SDY_2929 2711355 - 2710642 - | IS600 ORF2 TERM 3097 2711305 - 2711330 + g 74 -9.7 -3.55444 | overlap 2711309 ATTCTCTGCCAGCTC CGTCTGGAGCC GCCG GGCTCCATATG TTTCGCGAGTGCGGA TERM 3098 2711309 - 2711326 + g 77 -11.3 -3.24708 | overlap 2711305 TCTGCCAGCTCCGTC TGGAGCC GCCG GGCTCCA TATGTTTCGCGAGTG SDY_2930 2711798 - 2711496 - | IS600 ORF1 SDY_2931 2712202 - 2712645 + | molybdenum-pterin-binding-protein TERM 3099 2712654 - 2712682 + T 100 -10.3 -4.78326 | overlap 2712656 AGCGTAAACGCCTTA TTTGCCGGAGAGT ATG GCTCTCCAGCAGA TTTATTTCTTTGGAC TERM 3100 2712656 - 2712680 + T 71 -10.7 -2.66462 | overlap 2712654 CGTAAACGCCTTATT TGCCGGAGAGT ATG GCTCTCCAGCA GATTTATTTCTTTGG ygbA 2713028 - 2712684 - | hypothetical protein TERM 3101 2713900 - 2713888 - g 74 -10.5 -3.17194 | ATGTCGTTAATTGAA GGCCG TCG CGGCC TGCGCCGTCGCCCGC TERM 3102 2715796 - 2715779 - g 76 -7.7 -4.1822 | gap 1 CCGTACCGGAAGAAA CCTCG-CC TGC GGTCGAGG CACTGGAAAACCTCG mutS 2713315 - 2715876 + | DNA mismatch repair protein TERM 3103 2715909 - 2715883 - T 87 -11 -3.9461 | opp_overlap 2715883 CTGGTGTAATAATAA TTCCCGATAG TCTTTTG CTATCGGGAA TATTAACGATAACTG TERM 3104 2715883 - 2715909 + T 78 -11.7 -3.04461 | opp_overlap 2715883 CTGGTGTAATAATAA TTCCCGATAGT CTTTT GCTATCGGGAA TATTAACGATAACTG insB 2716317 - 2715940 - | IS1 ORF2 insA 2716637 - 2716362 - | IS1 ORF1 SDY_2936 2716970 - 2716734 - | hypothetical protein SDY_2937 2718225 - 2716981 - | hypothetical protein SDY_2938 2719000 - 2718407 - | phenylacrylic acid decarboxylase-like protein TERM 3105 2719017 - 2719032 + H 71 -7.6 -3.96068 | GCTTACTCTCTTGAT TGTTCG TATA CGAACA TTATTATTAAAATAC TERM 3106 2719123 - 2719109 - H 93 -10 -4.65895 | TTCGTCACTGAAAAA CCGCTA CGA TAGCGG CAGATAGTTTGCCCG TERM 3107 2719382 - 2719407 + G 74 -7.5 -4.06678 | opp_overlap 2719383 2719386, overlap 2719383 TAGTCAGACGTGAAC ATGATGCCGCT GACA AGCGGCGTCGC TTTGTCTGGCTGACT TERM 3108 2719383 - 2719406 + G 72 -11 -3.03525 | opp_overlap 2719383 2719386, overlap 2719382 AGTCAGACGTGAACA TGATGCCGCT GACA AGCGGCGTCG CTTTGTCTGGCTGAC SDY_2939 2719147 - 2719554 + | putative transcriptional regulator TERM 3109 2719632 - 2719655 + T 95 -12.4 -3.87075 | opp_overlap 2719632 CAAACAAAAGAAAAA GGCCAGCCTC GCTT GAGACTGGCC TTTCTGACAGATGCT TERM 3110 2719655 - 2719632 - T 100 -14.6 -5.67711 | opp_overlap 2719632 CAAACAAAAGAAAAA GGCCAGCCTC GCTT GAGACTGGCC TTTCTGACAGATGCT rpoS 2720666 - 2719674 - | RNA polymerase sigma factor RpoS nlpD 2721868 - 2720729 - | lipoprotein NlpD TERM 3111 2720990 - 2720971 - G 70 -7 -4.07133 | opp_overlap 2720970 TACCGGCATAAACAA CGCGGCCA TCTG CGGTCGCG ATAATTGCCTGTCCT TERM 3112 2721193 - 2721207 + g 72 -5 -4.65078 | TGGTCGCAGTTGGCT TGTTGT TCG GCAACA TTTTGTTAGCACTCT TERM 3113 2721464 - 2721487 + g 83 -5.3 -5.04385 | GTTGCCAGTAATCCA GGCGATATA GAAAAG TGTGTCGCC TTTTTTCACGGTATA TERM 3114 2721837 - 2721825 - G 86 -10.5 -3.96224 | GAAACCAGTGACAAA GCCGC AAT GCGGC GAACGGTGAATTTTG pcm 2722634 - 2722008 - | protein-L-isoaspartate O-methyltransferase TERM 3115 2722147 - 2722173 + g 70 -10.9 -2.72511 | overlap 2722146 AGAATCCCGCCTTCG TCCAGCTGCGT CATTA GCGCAGTTGGA ATTTCCGGCGGTGCC surE 2723389 - 2722628 - | stationary phase survival protein SurE truD 2724419 - 2723370 - | tRNA pseudouridine synthase D ispF 2724895 - 2724416 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 2725605 - 2724895 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 3116 2725570 - 2725558 - G 73 -9.1 -3.57462 | CATTCGACGGCCAAA TCCGG CCG CCGGA ACCACGGCGCAAACA ftsB 2725935 - 2725624 - | cell division protein FtsB TERM 3117 2726018 - 2726040 + r 74 -11.4 -2.82142 | opp_overlap 2726016, overlap 2726017 ATACCGCGACAACGC GGGCAAATGT ACC ACATTTGTCC ATTGTTACGTATACC ygbE 2726452 - 2726129 - | hypothetical protein cysC 2727107 - 2726502 - | adenylylsulfate kinase TERM 3118 2727047 - 2727017 - G 79 -12.6 -3.00525 | opp_overlap 2727017 2727013, overlap 2727012 2727020 GGCCGGTAAACCACA GCACTACACCACGA TGA CCGTGGTGTAGCTC GCGTTGTTGCACAGT TERM 3119 2727044 - 2727020 - G 90 -15.1 -2.7314 | opp_overlap 2727017 2727013, overlap 2727017 2727012 CGGTAAACCACAGCA CTACACCACGA TGA CCGTGGTGTAG CTCGCGTTGTTGCAC cysN 2728534 - 2727107 - | sulfate adenylyltransferase subunit 1 TERM 3120 2727670 - 2727654 - G 72 -5.8 -4.32034 | opp_overlap 2727654 CGATCACCATCAAAA GTCACG ATCCG CGCGAC GTTTGATTCCACACC cysD 2729444 - 2728536 - | sulfate adenylyltransferase subunit 2 TERM 3121 2729074 - 2729098 + g 75 -7.1 -4.33274 | overlap 2729079 TCAAAACCGTATTTG TTCAGGGCCTG TTT CAGGCCTTCAG TTTTCATAATATCGG TERM 3122 2729079 - 2729093 + g 80 -11.4 -3.39923 | overlap 2729074 ACCGTATTTGTTCAG GGCCTG TTT CAGGCC TTCAGTTTTCATAAT TERM 3123 2729597 - 2729585 - H 76 -4.8 -4.88228 | opp_overlap 2729594 AGCTAATATCAAAAA GTGC TTAAG GCAC CGGATTTCGGGCGTT iap 2729697 - 2730734 + | alkaline phosphatase isozyme conversion aminopeptidase ygbF 2731417 - 2731133 - | hypothetical protein SDY_2954 2732105 - 2731419 - | hypothetical protein TERM 3124 2731709 - 2731695 - G 85 -8.6 -4.4572 | opp_overlap 2731695 AATATCGTAAACAAA GGAAAG AGG CTTTCC TGTATGCACAAACCC SDY_2955 2732951 - 2732352 - | hypothetical protein TERM 3125 2732476 - 2732487 + g 75 -4.4 -4.74103 | opp_overlap 2732467, overlap 2732467 TCAAAGCAAACCGTT TGGA TTTT TCCA TTTTTACCTTCCCCA TERM 3126 2733171 - 2733143 - H 72 -3 -5.0133 | opp_overlap 2733133 CATGTCCCCAAAAAA GCGGGGGTGTTA GTGGG TAACTTCTCCGC CCCAGGTAGGGTGTA insA 2733329 - 2733604 + | IS1 ORF1 insB 2733649 - 2734026 + | IS1 ORF2 SDY_2958 2734797 - 2734276 - | IS911 ORF2 TERM 3127 2734684 - 2734695 + gT 77 -5.8 -4.63218 | opp_overlap 2734680 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SDY_2959 2735116 - 2734766 - | IS911 ORF2 TERM 3128 2735037 - 2735057 + gH 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_2960 2735185 - 2735487 + | IS600 ORF1 TERM 3129 2736435 - 2736410 - g 100 -9.7 -5.45802 | opp_overlap 2736410 CTCGCAAAATAAAAA CGCCCCCATCA TTTC TGACAGAGGCG TTTAATTTATCCGGC SDY_2961 2735628 - 2736440 + | IS600 ORF2 insB 2736846 - 2736469 - | IS1 ORF2 insA 2737166 - 2736891 - | IS1 ORF1 cysH 2737967 - 2737233 - | phosphoadenosine phosphosulfate reductase cysI 2739753 - 2738041 - | sulfite reductase subunit beta TERM 3130 2738425 - 2738396 - G 95 -11.5 -4.37092 | gap 1, overlap 2738408 2738409 ATGTTGTCGATAAAA GACGGCAGGAAACG CTC CGCTTCC-GCCATC GCCAGCGGGCAAGTC cysJ 2741552 - 2739753 - | sulfite reductase subunit alpha TERM 3131 2741461 - 2741447 - G 70 -7.1 -4.0056 | overlap 2741439 AGAAATAGCCAGAAA CCCAG GCAAG CTGGG TGGGAGTTAAATCGG TERM 3132 2741779 - 2741799 + H 72 -6.2 -4.21194 | ATTAAGATAAATCAG CGATTTTG CGCAA CAAAGTCG TTTTAGATAATGCGA TERM 3133 2742211 - 2742199 - g 72 -4.7 -4.67048 | opp_overlap 2742180 2742199 TGATGGTAAAAGAAA CCTGC ACC GCTGG TTGTATCTATCGCGG ygcM 2741868 - 2742233 + | putative 6-pyruvoyl tetrahydrobiopterin synthase TERM 3134 2742359 - 2742390 + GF 91 -11.5 -4.08689 | overlap 2742360 2742387 GCCGGTATTGCAGGC ACCGCTTGCGCGT TACGCT GCGCGCGAGCGGG TTTATCCGTTTTGTT TERM 3135 2742360 - 2742389 + GF 93 -15 -3.03587 | overlap 2742359 2742387 CCGGTATTGCAGGCA CCGCTTGCGCGT TACGCT GCGCGCGAGCGG GTTTATCCGTTTTGT TERM 3136 2742387 - 2742398 + GF 70 -3.6 -4.71426 | overlap 2742360 2742359 TACGCTGCGCGCGAG CGGG TTTA TCCG TTTTGTTACTGGAAC TERM 3137 2743047 - 2743063 + GF 75 -10.1 -3.53811 | GTCGTGTTCCGGCAA GCGAGCT GCT GGCTCGC TTTAAAACGCATCCG ygcN 2742281 - 2743582 + | hypothetical protein ygcO 2743537 - 2743833 + | hypothetical protein TERM 3138 2744320 - 2744295 - g 79 -3.9 -5.08824 | opp_overlap 2744277, overlap 2744296 GGGTGACGGAAAAAA TCCGCCAAC CGCTGATT GCTGGCGGG CTGGTATGCGATGAA ygcP 2743850 - 2744425 + | putative anti-terminator regulatory protein ygcS 2747596 - 2746187 - | putative transport protein TERM 3139 2746915 - 2746905 - G 77 -8.2 -4.08216 | opp_overlap 2746905, overlap 2746906 TGAGCTTCTGCAAAA CGCC CCT GGCG CAGTAGCCAGCGTGG TERM 3140 2747113 - 2747098 - G 78 -8.2 -4.25283 | overlap 2747101 ATGCGCCCAGCAAAA CACCGC GATG GCGGCG CGGGGAAAATTCAGT TERM 3141 2747576 - 2747555 - G 100 -14.5 -3.94877 | ATCCGGTAATAAGAA CGGCTTCTC GCCT GAGAAGCCG AAAAGGCAACGCCCC SDY_2974 2749072 - 2747699 - | hypothetical protein TERM 3142 2748187 - 2748203 + g 70 -10.1 -3.17392 | TCCCTTCGCCCGTCG CCTTCGC AAT GCGAGGG TTACCTTCAGCCATA TERM 3143 2748473 - 2748497 + g 90 -7.8 -4.76041 | gap 1 GATGTGACGAATGTC CGGGCCA-GCC GCGC GGCGTGGCACG TTTTTAATGCGTGTG SDY_2975 2749510 - 2749115 - | iso-IS1 ORF2 ygcW 2750701 - 2749916 - | putative oxidoreductase TERM 3144 2750734 - 2750771 + H 100 -20.1 -2.92712 | opp_overlap 2750734, overlap 2750738 GTAAGGCAAAAAAAA GAAAGGTAACTTCCCCC GCGA GAGGGAAGTTACCTTTC TCATTATCTCTGGTA TERM 3145 2750771 - 2750734 - H 100 -22.3 -5.86332 | opp_overlap 2750734 2750738 GTAAGGCAAAAAAAA GAAAGGTAACTTCCCCC GCGA GAGGGAAGTTACCTTTC TCATTATCTCTGGTA TERM 3146 2750738 - 2750767 + H 100 -15.1 -4.13 | opp_overlap 2750734, overlap 2750734 GGCAAAAAAAAGAAA GGTAACTTCCCCC GCGA GAGGGAAGTTACC TTTCTCATTATCTCT TERM 3147 2750775 - 2750797 + H 82 -7.8 -4.62069 | AAGTTACCTTTCTCA TTATCTCTGG TAA CTGGAGATAA TTTTTAGCATAAGGA TERM 3148 2750947 - 2750986 + H 100 -13 -5.80248 | opp_overlap 2750954 AATTACTAGAGACCT GAGAAAAGTAATCCACCT GAAA GGGCGGCTTACTTTTCTC TTTTTTTGTCTATTA TERM 3149 2750979 - 2750954 - H 72 -5.4 -4.4195 | opp_overlap 2750947 AGAGACCTGAGAAAA GTAATCCACC TGAAAG GGCGGCTTAC TTTTCTCTTTTTTTG TERM 3150 2752673 - 2752692 + G 70 -4.2 -4.69622 | overlap 2752676 AAACACACTAATCCT GACGTGGC ATAT GTCACCTC TTTTTCGGGTTATCT TERM 3151 2752913 - 2752928 + G 83 -10.4 -4.06419 | CTGGCGACACATTTC CCGGCA GGGC TGCCGG TTGTTTGTACCACCA ygcE 2752322 - 2753800 + | putative kinase TERM 3152 2753832 - 2753809 - T 79 -11.6 -3.21912 | TGCGTAAGTGAGGAA GACCGGGCGG GAAA CTGCCCGGCC AGAACATACCTGAAT SDY_2979 2754878 - 2753973 - | insertion element IS2 transposase InsD SDY_2980 2755201 - 2754836 - | insertion sequence 2 OrfA protein TERM 3153 2755523 - 2755543 + r 72 -8.5 -3.72893 | TTTACAGGTTCCACC CATTTATAA CGC TTATAAATG TTTAATCAGGCAATA ygcF 2756220 - 2755549 - | hypothetical protein TERM 3154 2756072 - 2756061 - G 70 -5.8 -4.1585 | CCAGAATGCTGAAAA GGGA GACT TCCC GATCCTCAAGCTTTT TERM 3155 2756164 - 2756151 - G 84 -3.7 -5.24551 | overlap 2756152 GTAAACGAATAAAAA TGGCG GGGA CGCCG GTAAAGTAACCCTCA SDY_2982 2756568 - 2756308 - | hypothetical protein SDY_2983 2756763 - 2757158 + | iso-IS1 ORF2 SDY_2984 2757182 - 2757400 + | hypothetical protein SDY_2985 2757414 - 2757704 + | hypothetical protein SDY_2986 2758122 - 2757727 - | iso-IS1 ORF2 SDY_2987 2758535 - 2758837 + | IS600 ORF1 SDY_2988 2758873 - 2759271 + | IS600 ORF2 SDY_2989 2760009 - 2759296 - | IS600 ORF2 SDY_2990 2760452 - 2760150 - | IS600 ORF1 SDY_2991 2760491 - 2760742 + | hypothetical protein SDY_2992 2760757 - 2761467 + | hypothetical protein insB 2761838 - 2761461 - | IS1 ORF2 insA 2762158 - 2761883 - | IS1 ORF1 TERM 3156 2762349 - 2762387 + G 70 -3.7 -4.67173 | overlap 2762347 CCAATTTAATCGTTG CCTGCGGTATGTTAACA CCTTT TGCGATCGTACCGCTGG TTATTTTTTGGCTTA SDY_2995 2762297 - 2762563 + | hypothetical protein TERM 3157 2762579 - 2762598 + T 89 -9.2 -4.66609 | opp_overlap 2762579 2762580, overlap 2762580 CTCAACCATAAAAAA CGCCAGCC CGAA GGCTGGCA TTTTTAAATCAGATA TERM 3158 2762598 - 2762579 - T 100 -11.4 -5.37345 | opp_overlap 2762579 2762580, overlap 2762580 CTCAACCATAAAAAA CGCCAGCC CGAA GGCTGGCA TTTTTAAATCAGATA TERM 3159 2762597 - 2762580 - T 93 -12.7 -3.81322 | opp_overlap 2762580 2762579, overlap 2762579 TCAACCATAAAAAAC GCCAGCC CGAA GGCTGGC ATTTTTAAATCAGAT TERM 3160 2762580 - 2762597 + T 85 -12.7 -3.39483 | opp_overlap 2762579 2762580, overlap 2762579 TCAACCATAAAAAAC GCCAGCC CGAA GGCTGGC ATTTTTAAATCAGAT eno 2763921 - 2762623 - | phosphopyruvate hydratase TERM 3161 2763964 - 2763992 + r 76 -11.7 -2.7458 | opp_overlap 2763966 2763969, overlap 2763963 CTGAAACTCCAGACA AACAACGCGTACC TAG GGTACGCGTTGCC GTTCTAACTTTTTTA TERM 3162 2763990 - 2763966 - R 100 -18.7 -4.07562 | opp_overlap 2763964 2763963, overlap 2763969 GAAACTCCAGACAAA CAACGCGTACC TAG GGTACGCGTTG CCGTTCTAACTTTTT TERM 3163 2763987 - 2763969 - R 100 -14.6 -4.15029 | opp_overlap 2763964 2763963, overlap 2763966 ACTCCAGACAAACAA CGCGTACC TAG GGTACGCG TTGCCGTTCTAACTT pyrG 2765646 - 2764009 - | CTP synthetase TERM 3164 2765316 - 2765337 + g 90 -11.5 -3.90744 | TAACCTGTACGGTTG CGCCGAGGT AGTC ACCGCGGCG TTCTTTACGCAGAAC TERM 3165 2765855 - 2765819 - R 100 -18.3 -3.64703 | opp_overlap 2765824 TGTTTTTGACGCAAA TCAAGCGCTTGTCATTT AAA AAATGACAAGCGTTTGA CCGCGTAATTCCCTT TERM 3166 2765824 - 2765850 + r 100 -16.8 -3.54919 | opp_overlap 2765819 TTGACGCAAATCAAG CGCTTGTCATTT AAA AAATGACAAGCG TTTGACCGCGTAATT mazG 2766660 - 2765869 - | nucleoside triphosphate pyrophosphohydrolase TERM 3167 2766198 - 2766210 + g 74 -7.7 -4.11869 | opp_overlap 2766198 TCCAGTCGAAGCCAA CGTTG GCG CAACG TTTCTGGATTTTTTG chpA 2767066 - 2766731 - | toxin ChpA TERM 3168 2766993 - 2766973 - G 78 -11.1 -3.42699 | opp_overlap 2766975, overlap 2766975 ACGGACTCAGGACAA CAGCCGGAC GAT GTCCGGCTT GCTCGCTACCTTTTG TERM 3169 2766975 - 2766991 + g 89 -13.7 -3.19656 | opp_overlap 2766973 2766975 GGACTCAGGACAACA GCCGGAC GAT GTCCGGC TTGCTCGCTACCTTT TERM 3170 2766991 - 2766975 - G 95 -13.7 -3.28447 | opp_overlap 2766975, overlap 2766973 GGACTCAGGACAACA GCCGGAC GAT GTCCGGC TTGCTCGCTACCTTT chpR 2767314 - 2767066 - | antitoxin MazE relA 2769626 - 2767392 - | GDP/GTP pyrophosphokinase rumA 2770975 - 2769674 - | 23S rRNA 5-methyluridine methyltransferase TERM 3171 2771571 - 2771586 + G 72 -5.4 -4.56961 | AGAGATCTTTATTTC CAGCGT GATG ATGCTG TTTTGTATCGGTATT TERM 3172 2773009 - 2772996 - g 71 -2.3 -5.02323 | overlap 2772991 TCATCACAAACAAAA CACGC TTTT GCCTG TAACCGATGAAAGTA barA 2771032 - 2773788 + | hybrid sensory histidine kinase BarA TERM 3173 2773979 - 2774010 + T 95 -10.9 -4.67943 | opp_overlap 2773985, overlap 2773985 GCGTTTAGCATCAGT CTCAAACCGGCTC CAGATA GAGCCGGTTTTGG TTTTCTGTCTTAACG TERM 3174 2774004 - 2773985 - T 82 -11.4 -3.58522 | opp_overlap 2773979 2773985 AGCATCAGTCTCAAA CCGGCTCC AGAT AGAGCCGG TTTTGGTTTTCTGTC TERM 3175 2773985 - 2774004 + T 100 -10.7 -4.75518 | opp_overlap 2773985, overlap 2773979 AGCATCAGTCTCAAA CCGGCTC CAGATA GAGCCGG TTTTGGTTTTCTGTC TERM 3176 2774839 - 2774863 + T 72 -10.7 -2.83403 | opp_overlap 2774842, overlap 2774838 ATGACGCAGGCGATA CCAGTCGCATG AGT CATCCGGCTGG CTTTGATACGGCAGA TERM 3177 2776386 - 2776368 - T 77 -8.8 -3.94634 | TAGCAGGTCAAACAA GGCGGC TTCCAGC GCCGCC ACGGCGTTAACGCGC TERM 3178 2776658 - 2776681 + T 84 -10.4 -3.85092 | gap 1, opp_overlap 2776652 ATTGAGCAACATGCT GTCATGTCCGG CGG CCGGA-ATGAC TTTCATATCAGTAAT TERM 3179 2778234 - 2778216 - T 76 -4.4 -4.93898 | ATAGCAGTATAAAAA GCGCGCCA TAG CGGCTCAC CGTGCAACAACACAA SDY_3007 2778947 - 2778498 - | flavodoxin yqcB 2779747 - 2778965 - | tRNA pseudouridine synthase C SDY_3009 2780076 - 2779747 - | hypothetical protein TERM 3180 2780127 - 2780156 + r 79 -10.7 -3.51411 | opp_overlap 2780129, overlap 2780123 2780128 TAGCAGGAATAAAAA AAGGGAGCACTGT ATTC ACAGTGCTCCCGG TTAGTTTCGCAGCAT TERM 3181 2780128 - 2780155 + r 83 -14.2 -2.70525 | opp_overlap 2780129, overlap 2780127 2780123 AGCAGGAATAAAAAA AGGGAGCACTGT ATTC ACAGTGCTCCCG GTTAGTTTCGCAGCA TERM 3182 2780154 - 2780129 - R 100 -17.7 -5.84381 | opp_overlap 2780128 2780127 2780123 GCAGGAATAAAAAAA GGGAGCACTGT ATTC ACAGTGCTCCC GGTTAGTTTCGCAGC syd 2781243 - 2780698 - | SecY interacting protein Syd TERM 3183 2782013 - 2781991 - g 71 -10.6 -2.86271 | opp_overlap 2781989 2782003 2782004, overlap 2781988 2782003 CCGTCATCACAACGA GTTCCACGAA CAG TGCGTGGAAC GCATCTTTAATGACC queF 2781311 - 2782159 + | 7-cyano-7-deazaguanine reductase ygdH 2782271 - 2783635 + | hypothetical protein TERM 3184 2783646 - 2783667 + F 93 -10.1 -4.72556 | overlap 2783664 CGTAATCTCCCCTCC CCCGGTGAC GTTT GTTGCCGGG TTTTCTCGTTTTTGG TERM 3185 2783664 - 2783675 + F 71 -3.6 -4.77157 | overlap 2783646 GGTGACGTTTGTTGC CGGG TTTT CTCG TTTTTGGTCACTTAC TERM 3186 2783921 - 2783946 + F 76 -8.5 -4.06527 | gap 1, overlap 2783927 AGAAGTCAGATGTCG TTTAATGGGCAA ATA TTGCCC-TTAAA TTCTCTTTTACTTTT TERM 3187 2783927 - 2783941 + F 73 -10 -3.32941 | overlap 2783921 CAGATGTCGTTTAAT GGGCAA ATA TTGCCC TTAAATTCTCTTTTA sdaC 2784192 - 2785481 + | serine transporter TERM 3188 2785490 - 2785509 + F 81 -12.8 -3.27786 | overlap 2785502 2785504 CGGCTAAGTCCTTTC GCGCCGCT TTCG GGCGGCGC TTCCTCCGTTTTAAC TERM 3189 2786316 - 2786296 - g 72 -5.3 -4.4767 | opp_overlap 2786296 TCAGCCAGGATAAAA CCACCACTG ACC CGATGGCGG TTGTTGACTGGATCA TERM 3190 2786373 - 2786363 - g 72 -8.2 -3.7645 | AGTGAACGAAGAGAA CGCC GCT GGCG GTCGCGTGGTGACTG sdaB 2785539 - 2786906 + | L-serine dehydratase TERM 3191 2786919 - 2786937 + F 80 -12.4 -3.08774 | overlap 2786911 TAATCGCTCTCCAGA GGCCTCGT TTT GCGAGGCC TCTTCCCGATTTCTC TERM 3192 2787187 - 2787176 - g 75 -7.2 -4.30576 | overlap 2787178 TTTTGATGATGAAAA CCGC AGTA GCGG CTGGCGTCATCAGCG xni 2786928 - 2787773 + | exonuclease IX TERM 3193 2787779 - 2787810 + T 93 -14.4 -3.32844 | overlap 2787780 GGTACGGTAACGGCG AGCCGGATACGCCG CAAA CGTCGTATCCGGCA TTATCACATCAGCGC TERM 3194 2787780 - 2787809 + T 100 -17.9 -2.59564 | overlap 2787779 GTACGGTAACGGCGA GCCGGATACGCCG CAAA CGTCGTATCCGGC ATTATCACATCAGCG fucO 2788979 - 2787828 - | L-1,2-propanediol oxidoreductase fucA 2789651 - 2789004 - | L-fuculose phosphate aldolase TERM 3195 2789875 - 2789842 - H 71 -3.9 -4.74801 | TAATCCCATTAAAAA TGACCGCTCTTAAAA ATAT TTATCAAAACGGTCA TTCTTCTATTCCTCC TERM 3196 2790388 - 2790405 + H 78 -6.3 -4.62957 | gap 1 ACAAATTTCCAGGCT GGCCTGAT CCA ATC-GGCC TTTTACTTTGGTTAT SDY_3019 2791116 - 2791511 + | iso-IS1 ORF2 TERM 3197 2792343 - 2792332 - g 93 -2.2 -5.63103 | CTGTAATGAAAAAAA TCAG CTTA CCGA AAATTAGTATCCGCC TERM 3198 2793048 - 2793032 - g 71 -3 -4.82901 | gap 1, overlap 2793034 CTGGGCTGATAAAAA CTTCCGC TATG GCG-AAG ATGAAAATAACAAAC fucI 2792322 - 2794097 + | L-fucose isomerase fucK 2794176 - 2795624 + | L-fuculokinase fucU 2795626 - 2796048 + | protein of fucose operon TERM 3199 2796044 - 2796034 - f 76 -2.4 -5.40474 | ATTCTTTTAAAAAAA GGGG TAA CACC GTAATCTCATACCGG TERM 3200 2796061 - 2796081 + F 73 -9.6 -3.34043 | overlap 2796062 TAATCTCATACCGGT ACGCCCGC ATGAC GCGGGCGG TTATCGAATGATGGG TERM 3201 2796062 - 2796080 + F 81 -13.1 -2.60212 | overlap 2796061 AATCTCATACCGGTA CGCCCGC ATGAC GCGGGCG GTTATCGAATGATGG TERM 3202 2796354 - 2796372 + G 72 -11.6 -2.52464 | opp_overlap 2796353 GCATAAAGCAGATAT CGCGCGCG AGG CGCTCGCG TGGATTGAAGAAGGG fucR 2796106 - 2796837 + | DNA-binding transcriptional activator FucR ygdE 2797981 - 2796881 - | putative RNA 2'-O-ribose methyltransferase ygdD 2798369 - 2797974 - | hypothetical protein TERM 3203 2798342 - 2798328 - G 74 -8.5 -3.88001 | TGCCACAAAAATGAA GCCGC TAATG GCGGC GAAAATCAGCATAAA gcvA 2799305 - 2798388 - | DNA-binding transcriptional activator GcvA TERM 3204 2799547 - 2799561 + r 100 -10 -5.17576 | opp_overlap 2799546 TGCGATTCAGACCAT GGTAGC AAA GCTACC TTTTTTCACTTCCTG TERM 3205 2799612 - 2799631 + r 100 -10.7 -5.86332 | opp_overlap 2799612 ATAGTGATTAATGTA GCACCGC CTAATT GCGGTGC TTTTTTTTACCTTGC TERM 3206 2799631 - 2799612 - R 70 -10.7 -2.57423 | opp_overlap 2799612 ATAGTGATTAATGTA GCACCGC CTAATT GCGGTGC TTTTTTTTACCTTGC SDY_3027 2799886 - 2799656 - | hypothetical protein SDY_3028 2800075 - 2801280 + | cysteine sulfinate desulfinase ygdK 2801280 - 2801723 + | hypothetical protein TERM 3207 2801732 - 2801769 + T 95 -12.7 -3.92542 | opp_overlap 2801732 2801733, overlap 2801733 2801735 GGTTTAAGCACAGAA CCAGGTCGGATAAGACG TTCG CGTCGCATCCGACCTGA TTGTTTACCCCTGAC TERM 3208 2801769 - 2801732 - T 100 -17.1 -3.59946 | opp_overlap 2801732 2801733 2801735, overlap 2801733 GGTTTAAGCACAGAA CCAGGTCGGATAAGACG TTCG CGTCGCATCCGACCTGA TTGTTTACCCCTGAC TERM 3209 2801733 - 2801768 + T 93 -16.2 -2.95204 | opp_overlap 2801732 2801733, overlap 2801732 2801735 GTTTAAGCACAGAAC CAGGTCGGATAAGACG TTCG CGTCGCATCCGACCTG ATTGTTTACCCCTGA TERM 3210 2801768 - 2801733 - T 100 -18.4 -2.75647 | opp_overlap 2801733 2801732 2801735, overlap 2801732 GTTTAAGCACAGAAC CAGGTCGGATAAGACG TTCG CGTCGCATCCGACCTG ATTGTTTACCCCTGA TERM 3211 2801735 - 2801766 + T 82 -13 -3.02639 | opp_overlap 2801733 2801732, overlap 2801733 2801732 TTAAGCACAGAACCA GGTCGGATAAGACG TTCG CGTCGCATCCGACC TGATTGTTTACCCCT ygdL 2802580 - 2801774 - | putative enzyme TERM 3212 2802620 - 2802600 - R 100 -10.4 -4.93365 | CCTCAGAATTAAAAA GGGCGAGG TTATC CCTCACCC TAAACGCATAAATGC TERM 3213 2802739 - 2802710 - R 77 -10.7 -3.30124 | TTGTAGGCTGGATAA GGCGTTCACGCCG CATC CGGCATGAACAAC GCGCACTTAGTCAAT mltA 2803916 - 2802819 - | murein transglycosylase A TERM 3214 2804321 - 2804334 + r 100 -8.1 -6.02919 | opp_overlap 2804321 CAACCAATTATTGAA CACCC TAAC GGGTG TTTTTTTGTTTCTGG TERM 3215 2804377 - 2804364 - R 82 -5.9 -5.24129 | opp_overlap 2804364 GTCTCCTATAAAAAA GCGCC ATTC AGCGC CTTTTTATCATCCCC SDY_3034 2805728 - 2804385 - | putative amidase TERM 3216 2804697 - 2804707 + g 78 -8.2 -4.25104 | opp_overlap 2804697 GGTGTGGTCGACATA GCGG TCA CCGC TTTTGCTCACGCCAC TERM 3217 2804978 - 2805002 + g 70 -3.5 -4.61527 | TCAGAGAGCGCAGAC GGCGAGCTATT TGC AATACCACGTC TTTTTCGCGCGTTTT TERM 3218 2807162 - 2807147 - g 73 -4 -4.8048 | GCCCGAGAGCAAAAA GCAGTT GTAC AACTAC CAGCGTAAATCCAAA argA 2805870 - 2807201 + | N-acetylglutamate synthase TERM 3219 2807206 - 2807261 + T 87 -11.2 -3.87815 | gap 1, opp_overlap 2807212 2807214, overlap 2807212 ATTTAGGGTAAGCGA CGAAAATCGCCGGATGCGACATGCG TAACACT CGTGCGTCGCATCCGGCAATTA-CG TTTATCCCCGTGAAC TERM 3220 2807256 - 2807212 - T 100 -14.3 -4.30978 | opp_overlap 2807206 2807212, overlap 2807214 GGTAAGCGACGAAAA TCGCCGGATGCGACATGCG TAACACT CGTGCGTCGCATCCGGCAA TTACGTTTATCCCCG TERM 3221 2807212 - 2807256 + T 93 -14.3 -3.32997 | opp_overlap 2807212 2807214, overlap 2807206 GGTAAGCGACGAAAA TCGCCGGATGCGACATGCG TAACACT CGTGCGTCGCATCCGGCAA TTACGTTTATCCCCG TERM 3222 2807254 - 2807214 - T 86 -14.7 -2.50381 | opp_overlap 2807212 2807206, overlap 2807212 TAAGCGACGAAAATC GCCGGATGCGACATGCG TAACACT CGTGCGTCGCATCCGGC AATTACGTTTATCCC RecD 2809089 - 2807263 - | exonuclease V subunit alpha TERM 3223 2808001 - 2808017 + g 79 -4.3 -5.00616 | opp_overlap 2807999 ACCAATGCCAGAATC GCTGCCG AAA CGATAGC TTTTTTGCAGCAGGC TERM 3224 2808793 - 2808771 - G 70 -4.8 -4.46112 | TGCGATTCAAATAAA GACGATCGCC ACA GAGGATCATC GGCGTTGGTTCATCT RecB 2812631 - 2809089 - | exonuclease V subunit beta TERM 3225 2809235 - 2809220 - G 70 -6 -4.21954 | overlap 2809217 2809221 GGAACAGATAAATAA CGCCGC CAAA GTGGCG CTCATAGTCGTAATC TERM 3226 2811590 - 2811602 + g 74 -6.2 -4.57569 | overlap 2811589 2811597 CATCAAAACCCAATT CGCC ACGGC GGCG TTTTTCACGCGCTAC TERM 3227 2811778 - 2811757 - G 70 -5.8 -4.16016 | CGATCTTCTAAGAAA CGCTGGGA GAATTT TTCCAGCG ACTCCGGCAACTGAT TERM 3228 2812600 - 2812574 - G 90 -14.4 -2.72049 | CAGAGGCTTCAATCA GGCGCTCGCCCT GTA AGGGCAAGCGCA AAGGATCTAGTGTCT ptr 2815512 - 2812624 - | protease III TERM 3229 2813248 - 2813265 + g 72 -5.5 -4.58395 | CGCTGCCAGTGCGGA GTCGGTG CTGT TACCGGC TTTTTCAAAGATGAC TERM 3230 2814698 - 2814726 + g 84 -3.7 -5.28755 | overlap 2814693 2814699 2814706 ATGCCCTTTTGCGCG TCGGTGACTACCG GCA CGGTGATTTCCGG TTTTTTGCTCTCTTT TERM 3231 2815144 - 2815130 - G 70 -7.1 -4.128 | ACTTCCAGATAGAAA GCCGT GCGAT ACGGC GCAGTGCTGGCATTG recC 2819056 - 2815688 - | exonuclease V subunit gamma TERM 3232 2816077 - 2816065 - G 78 -5.5 -4.82901 | CTTTGCGTAGAAAAA GGCGA CTT TCACC ATTACCACCGCTGGC ppdC 2819392 - 2819069 - | hypothetical protein ygdB 2819784 - 2819377 - | hypothetical protein TERM 3233 2819458 - 2819445 - G 74 -3.1 -5.00616 | CGCGTGGCGAAAAAA CAATG TTTC CATCG ATGACTTCACCTGTT TERM 3234 2819576 - 2819606 + g 85 -8.2 -4.56597 | opp_overlap 2819580 GCGTACTGCGAGCAC TGAACTGCTGGCTG CGT CTGCCAGGAGTGCA TTTTTCCCCACGCCA ppdB 2820344 - 2819781 - | hypothetical protein ppdA 2820805 - 2820335 - | hypothetical protein TERM 3235 2820968 - 2820949 - R 100 -10.7 -5.75342 | GGTGGGTAAAAAAAA CCGACGC ACACTG GCGTCGG CTCTGGCAGGATGTT thyA 2821784 - 2820990 - | thymidylate synthase TERM 3236 2821657 - 2821627 - G 72 -11.1 -3.09516 | opp_overlap 2821643 TCGTGGATGATGGAA CGCAGGTGGCAAC GTTTG GTTGTCACCAGCG GGAATCCCTCCTGCA lgt 2822666 - 2821791 - | prolipoprotein diacylglyceryl transferase ptsP 2825064 - 2822818 - | fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein TERM 3237 2824370 - 2824410 + g 81 -10.6 -3.61398 | gap 2, opp_overlap 2824346 2824344 2824378 TCTTTTTGTGCACCG GCGGCAAA-GCGTTT-GCTG TAG CGGCGAAACTCGTTTGCCGC TTCTTCCAGCGCCCC ygdP 2825607 - 2825077 - | dinucleoside polyphosphate hydrolase TERM 3238 2826249 - 2826264 + H 70 -2.5 -5.04249 | TACACTGCGAATATT CGGCA CATAAT TGCTG TTTATTTTTTAACCA TERM 3239 2826545 - 2826530 - g 76 -7.6 -4.27316 | opp_overlap 2826530 2826528 GCGTGGAACTTAAAA CTATCC CTGT GGATAG TCTTGGTCGTCCGCT TERM 3240 2826909 - 2826921 + G 85 -6.9 -4.86731 | CGAACGGATTCTGAC GCTGC CGC GCGGC TTTTATTTGAAGAAA mutH 2826292 - 2826981 + | DNA mismatch repair protein SDY_3049 2827050 - 2827763 + | putative transport protein SDY_3050 2827901 - 2828119 + | hypothetical protein TERM 3241 2829053 - 2829043 - g 93 -8.2 -4.82855 | opp_overlap 2829042 2829040, overlap 2829045 GAGCAAACGCAAAAA GCCG TCG CGGC GTATGTTGATATCGC SDY_3051 2828227 - 2829267 + | putative aldo-keto reductase TERM 3242 2829269 - 2829296 + T 81 -12.8 -3.13403 | opp_overlap 2829270 2829274 2829286, overlap 2829274 ATCCTGCACCATAAG ATTAACGCCGGT TAAA ACCGGCGTTAAA TATTAATGACGGCGC TERM 3243 2829295 - 2829270 - T 100 -16.3 -3.27475 | opp_overlap 2829269 2829274, overlap 2829274 2829286 TCCTGCACCATAAGA TTAACGCCGGT TAAA ACCGGCGTTAA ATATTAATGACGGCG TERM 3244 2829274 - 2829291 + T 81 -12.7 -3.20348 | opp_overlap 2829274 2829270 2829286, overlap 2829269 GCACCATAAGATTAA CGCCGGT TAAA ACCGGCG TTAAATATTAATGAC TERM 3245 2829291 - 2829274 - T 85 -12.7 -3.43203 | opp_overlap 2829269 2829274, overlap 2829270 2829286 GCACCATAAGATTAA CGCCGGT TAAA ACCGGCG TTAAATATTAATGAC TERM 3246 2829333 - 2829303 - T 70 -9 -3.45571 | opp_overlap 2829306, overlap 2829286 2829297 2829306 GGCGTTAAATATTAA TGACGGCGCTGC CAGATCC ACAGCGCCGTTA TTGCCAGCGCAAACA TERM 3247 2829306 - 2829330 + T 75 -10 -3.61398 | opp_overlap 2829286 2829306 2829303 2829297 GTTAAATATTAATGA CGGCGCTG CCAGATCCA CAGCGCCG TTATTGCCAGCGCAA TERM 3248 2829330 - 2829306 - T 72 -10.7 -2.8742 | opp_overlap 2829306, overlap 2829286 2829303 2829297 GTTAAATATTAATGA CGGCGCTGC CAGATCC ACAGCGCCG TTATTGCCAGCGCAA ygeD 2830492 - 2829299 - | hypothetical protein TERM 3249 2829829 - 2829816 - G 75 -6.7 -4.30719 | GCTCCCCAGAATAAA CTGGT GCCC ACCAG CGAAAAACGCGTTTC aas 2832644 - 2830485 - | bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase TERM 3250 2832740 - 2832757 + H 81 -12.7 -3.14132 | opp_overlap 2832740 AGGTGCGAAAAAAAA CCTGCGC ATCC GCGCAGG TTGGTGCAAGAGACA TERM 3251 2832757 - 2832740 - H 100 -12.7 -5.75945 | opp_overlap 2832740 AGGTGCGAAAAAAAA CCTGCGC ATCC GCGCAGG TTGGTGCAAGAGACA TERM 3252 2832960 - 2832943 - H 100 -12.7 -6.07627 | opp_overlap 2832942 2832939 2832949 ACCGGCAAAAAAAAA CCTGCGC ATCT GCGCAGG CTGGTGTAATTCATG galR 2833230 - 2834261 + | DNA-binding transcriptional regulator GalR lysA 2835530 - 2834268 - | diaminopimelate decarboxylase lysR 2835652 - 2836587 + | DNA-binding transcriptional regulator LysR ygeA 2837257 - 2836574 - | putative racemase TERM 3253 2837379 - 2837353 - R 100 -18.8 -5.30155 | CTATTAACGAAAAAA GGGCCGGATGTA CAG CACATCCGGCCC GTGAAATCAGACGCC araE 2838615 - 2837386 - | low-affinity L-arabinose transport system proton symport protein insB 2839240 - 2838863 - | IS1 ORF2 insA 2839560 - 2839285 - | IS1 ORF1 TERM 3254 2839747 - 2839717 - R 73 -7.4 -4.10429 | overlap 2839718 AATGATTTCTGAAAA GTCCGGTAGCGGAA CAT TACCGCCACCGGGA GAATTTGCACGTTAG TERM 3255 2839746 - 2839718 - R 75 -10.9 -3.05775 | overlap 2839717 ATGATTTCTGAAAAG TCCGGTAGCGGAA CAT TACCGCCACCGGG AGAATTTGCACGTTA dkgA 2840586 - 2839759 - | 2,5-diketo-D-gluconate reductase A TERM 3256 2840604 - 2840633 + rH 77 -10.7 -3.36968 | opp_overlap 2840607, overlap 2840606 2840607 GTTCCTCCTTTATAT GAACTCACCGGAG CAGG CTCCGGTGAGGTG TTGTGAACTTAAGTC TERM 3257 2840606 - 2840631 + rH 83 -13.3 -3.25192 | opp_overlap 2840607, overlap 2840604 2840607 TCCTCCTTTATATGA ACTCACCGGAG CAGG CTCCGGTGAGG TGTTGTGAACTTAAG TERM 3258 2840630 - 2840607 - RH 100 -16.8 -3.25823 | opp_overlap 2840606 2840604 2840607 CCTCCTTTATATGAA CTCACCGGAG CAGG CTCCGGTGAG GTGTTGTGAACTTAA TERM 3259 2840607 - 2840630 + rH 95 -16.8 -2.54794 | opp_overlap 2840607, overlap 2840606 2840604 CCTCCTTTATATGAA CTCACCGGAG CAGG CTCCGGTGAG GTGTTGTGAACTTAA yqhD 2841854 - 2840691 - | putative oxidoreductase TERM 3260 2840951 - 2840966 + gH 75 -4.6 -4.8622 | ATTGCAGCAGCTTAG CGCGCT TGGT ATCGCG TTTTTCATTCCACAG yqhC 2841820 - 2842947 + | putative ARAC-type regulatory protein TERM 3261 2842976 - 2842951 - TR 82 -11.2 -3.5486 | overlap 2842949 2842952 CAGGGGAATTAAATA CGTTCCCGGT ACAGCA ACCGGGAACA GGGAAAATCGTCAGG TERM 3262 2842975 - 2842952 - TR 78 -12.5 -2.72434 | overlap 2842951 2842949 AGGGGAATTAAATAC GTTCCCGGT ACAGCA ACCGGGAAC AGGGAAAATCGTCAG yghB 2843646 - 2842987 - | hypothetical protein TERM 3263 2843284 - 2843258 - G 73 -4.2 -4.76213 | ACAAATGCAAGAAAA CGTCCAGCCAGC AGC GCCAGCAGACCG TGGCGGTCAAACATG metC 2844974 - 2843787 - | cystathionine beta-lyase TERM 3264 2844834 - 2844846 + g 85 -6.9 -4.75174 | overlap 2844827 GCCATTGGCGCGATT GCGCG TCG CGTGC TTTTTGGCTTCCATA TERM 3265 2844977 - 2844987 + H 73 -4.6 -4.89852 | TTTTGTCCGCCATGT CGGG ATT CCTG TTTTTATACGTCTGG SDY_3066 2845078 - 2845233 + | hypothetical protein exbB 2845226 - 2845960 + | biopolymer transport protein ExbB exbD 2845967 - 2846392 + | biopolymer transport protein ExbD TERM 3266 2846428 - 2846396 - T 100 -8.4 -5.34381 | opp_overlap 2846399, overlap 2846397 2846399 2846420 AAAGCGAAATAAAAA TGATGCCCGGTTGC TTTTC ACAACCGGGCATTT TTTTAACCTAAATGC TERM 3267 2846427 - 2846397 - T 93 -11.9 -3.78189 | opp_overlap 2846399, overlap 2846396 2846399 2846420 AAGCGAAATAAAAAT GATGCCCGGTTGC TTTTC ACAACCGGGCATT TTTTTAACCTAAATG TERM 3268 2846425 - 2846399 - T 93 -14.5 -3.45131 | opp_overlap 2846399, overlap 2846397 2846396 2846420 GCGAAATAAAAATGA TGCCCGGTTGC TTTTC ACAACCGGGCA TTTTTTTAACCTAAA TERM 3269 2846399 - 2846425 + T 100 -13.8 -5.44119 | opp_overlap 2846397 2846396 2846399 2846420 GCGAAATAAAAATGA TGCCCGGTTG CTTTTCA CAACCGGGCA TTTTTTTAACCTAAA yghA 2847315 - 2846431 - | oxidoreductase TERM 3270 2846570 - 2846588 + g 76 -9.6 -3.85698 | opp_overlap 2846569 2846570, overlap 2846537 2846536 2846584 GTTTGCTGACCAAAC TGCGGGAT CTT ATCCTGCA TTTGTCCGCCGGAAA yqhA 2847506 - 2848000 + | hypothetical protein TERM 3271 2848008 - 2848028 + T 100 -16.1 -3.62775 | overlap 2848025 ATCACTGATCTGATT CGGGCGCGG TTC TCGCGCCCG TTATTAACAGGTCAT insB 2848677 - 2848300 - | IS1 ORF2 insA 2848997 - 2848722 - | IS1 ORF1 SDY_3073 2849857 - 2849048 - | putative reductase TERM 3272 2851009 - 2850981 - H 71 -7 -4.07568 | gap 1, overlap 2850983 GTTCTTTGCCTAAAA TATCGCTATATAT GGTA ATATATAGCGA-A TGAGGTGAACGATGA TERM 3273 2851008 - 2850983 - H 86 -12.1 -3.63744 | overlap 2850981 TCTTTGCCTAAAATA TCGCTATATAT GGTA ATATATAGCGA ATGAGGTGAACGATG SDY_3075 2851021 - 2851308 + | hypothetical protein SDY_3076 2851497 - 2852615 + | hydrogenase 2 small subunit TERM 3274 2852961 - 2852948 - g 72 -6.7 -4.29106 | GCGTACATTAAGAAA CAGTG TATG CACTG CGTCGATCCGAACTG hybA 2852618 - 2853604 + | hydrogenase 2 protein HybA TERM 3275 2854750 - 2854739 - g 81 -4.4 -5.07652 | overlap 2854742 2854748 TCCTTTAAAACAAAA CGAT CATA ATCG TCATGAGGCGAGCAA hybB 2853594 - 2854772 + | putative hydrogenase 2 b cytochrome subunit TERM 3276 2854923 - 2854909 - g 72 -4.9 -4.61633 | opp_overlap 2854915, overlap 2854897 2854910 AGAGATCGTGAAAAA CCGCG ATCCG CGCGA TGCATGGATGATTGT hybC 2854769 - 2856472 + | hydrogenase 2 large subunit TERM 3277 2856825 - 2856810 - g 70 -4.6 -4.57569 | opp_overlap 2856809 CGAGTTTCCGAAAAA GCTGAC CCTG GTCGGC GTAATTCCGGAATCA hybD 2856472 - 2856966 + | hydrogenase 2 maturation endopeptidase TERM 3278 2857394 - 2857417 + G 100 -13.2 -3.72695 | gap 1, opp_overlap 2857381 2857396, overlap 2857397 AATCCGGATGTACCA CACGCAGGGCG TCG CGCCCTGC-TG TTTGGTCGCAGGAGT TERM 3279 2857416 - 2857396 - g 77 -12.5 -2.80816 | opp_overlap 2857394 2857397, overlap 2857381 TCCGGATGTACCACA CGCAGGGCG TCG CGCCCTGCT GTTTGGTCGCAGGAG TERM 3280 2857397 - 2857415 + G 100 -16 -3.44848 | opp_overlap 2857396 2857381, overlap 2857394 CCGGATGTACCACAC GCAGGGCG TCG CGCCCTGC TGTTTGGTCGCAGGA hybE 2856959 - 2857447 + | hydrogenase 2-specific chaperone TERM 3281 2857538 - 2857573 + G 77 -6.2 -4.67641 | gap 2, opp_overlap 2857538, overlap 2857539 2857539 2857541 CGTGTGGCTGGAAAT TGG-C-GCGCTCTCCT GCGTTG AGGGGAGCGCCGTCCG TTTTAGTTTTGAAAT hybF 2857440 - 2857781 + | hydrogenase nickel incorporation protein HybF hybG 2857794 - 2858042 + | hydrogenase 2 accessory protein HypG TERM 3282 2858058 - 2858091 + T 73 -9.5 -3.44319 | opp_overlap 2858068, overlap 2858059 TGATTAGCTTTTGTA GGCCTGATAAGACGC GACA GCGTCGCATCAGGCA TTGTGCTCGATTGCC TERM 3283 2858059 - 2858090 + T 81 -13 -2.6627 | opp_overlap 2858068, overlap 2858058 GATTAGCTTTTGTAG GCCTGATAAGACGC GACA GCGTCGCATCAGGC ATTGTGCTCGATTGC TERM 3284 2858086 - 2858068 - T 79 -11 -3.30124 | opp_overlap 2858059 2858058 TTGTAGGCCTGATAA GACGCGAC AGC GTCGCATC AGGCATTGTGCTCGA SDY_3084 2859079 - 2858165 - | putative glutathione S-transferase YghU TERM 3285 2858371 - 2858345 - G 81 -10.1 -3.91897 | TCCCGCATCCAGAAA CTCTGCGGCAT CATAC ACGCCGCCGAG CACCACGTTGCCAAA gsp 2859236 - 2861095 + | bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase TERM 3286 2861110 - 2861146 + F 77 -11 -3.16668 | opp_overlap 2861101 2861100 2861111 ATACATGTTGTAGCA ACCCCATACTGATTAT GAAGA ATAATCAGTACGGGGA TTAATCAAAATATTC TERM 3287 2861145 - 2861111 - f 100 -16.7 -3.15249 | opp_overlap 2861110, overlap 2861100 TACATGTTGTAGCAA CCCCATACTGATTAT GAAGA ATAATCAGTACGGGG ATTAATCAAAATATT TERM 3288 2861542 - 2861560 + G 86 -3.8 -5.32608 | CATGCAGCCACAGCT TGCCGT GGTGATG GCGGCA TTTTTTAACTTTTTT pitB 2861387 - 2862886 + | low-affinity phosphate transport TERM 3289 2862893 - 2862927 + T 100 -13.7 -4.68994 | opp_overlap 2862899 TTGATTTAACCTTCC TGAAAATGCCCGGTC CTGGC GATCGGGCATTTCCA TTTTTGACTAGTGAT TERM 3290 2862921 - 2862899 - T 79 -9.1 -4.08692 | opp_overlap 2862893 TAACCTTCCTGAAAA TGCCCGGTC CTGGC GATCGGGCA TTTCCATTTTTGACT yghT 2863639 - 2862935 - | hypothetical protein TERM 3291 2863372 - 2863399 + g 93 -2.6 -5.69023 | opp_overlap 2863364 2863375, overlap 2863380 2863396 CGACAAACGCTGTAA TTACCAGCGCCG GAAC TGGTCCTGGCAA TTTTTTTGCTGTTTT insA 2863681 - 2863956 + | IS1 ORF1 SDY_3089 2865290 - 2864313 - | hypothetical protein SDY_3090 2866975 - 2865287 - | acyl-CoA synthetase TERM 3292 2865552 - 2865540 - G 70 -4.1 -4.63218 | TGGGCGGTAACAAAA GCAAT CGC ATCGC CAGAATGAATTTCCG SDY_3091 2867416 - 2867021 - | iso-IS1 ORF2 TERM 3293 2867882 - 2867896 + H 76 -8.6 -4.13872 | TGGCGCGGGTTGTTT TTCGTG ACG CACGAA TTTATCTCATTCAAT gspC 2867995 - 2868825 + | putative type II secretion protein GspC TERM 3294 2868928 - 2868950 + F 77 -10.6 -3.36492 | opp_overlap 2868922 2868921 CAAAAAAGCGTTTAC TGCCGCTG GTGCTGG CAGCGGCA TTATGCAGTTCACCG TERM 3295 2869565 - 2869538 - g 73 -4.1 -4.73388 | gap 1, overlap 2869550 2869551 AAGCCTGACGAAAAA CAGCGGCG-AGA ACCAG CCTGCGACGCTG AAATCTCAAATTGTC gspD 2869065 - 2870900 + | putative type II secretion protein TERM 3296 2871168 - 2871181 + G 82 -3.1 -5.22312 | TGATGGAAGAGCTCG GTTCT GCTG AGGAC TTTTTTACTCTCGCT TERM 3297 2871584 - 2871571 - g 90 -8.1 -4.83169 | overlap 2871574 2871575 ACTGCTGGACAAAAA CCAGG CCAG CCTGG CGCAGGAGCGTCTGG gspE 2870900 - 2872393 + | putative type II secretion protein gspF 2872393 - 2873592 + | putative type II secretion protein gspG 2873633 - 2874088 + | putative type II secretion protein TERM 3298 2874325 - 2874341 + G 81 -10.1 -3.85817 | overlap 2874339 TATGCAGCGTCGTCA CGGGCAG TGG TTGCCCG TTTCTGCGACCCGGT gspH 2874125 - 2874655 + | putative type II secretion protein TERM 3299 2874686 - 2874697 + G 77 -5.8 -4.62783 | TGCTGGAAGTGATGC TCGC ACTG GCGA TTTTTGCGCTGGCTG gspI 2874652 - 2875023 + | putative type II secretion protein TERM 3300 2875063 - 2875074 + G 77 -5.8 -4.67353 | TACTGGAAATGCTGG TGGC AATT GCCA TTTTTGCCTCGCTGG gspJ 2875056 - 2875625 + | putative type II secretion protein TERM 3301 2875857 - 2875875 + G 91 -8 -5.03314 | overlap 2875850 TGCATCTGGCACAGT CGTGGGCT TCT GGCCCTCG TTTTTTCCCACTGCC TERM 3302 2876472 - 2876454 - g 73 -3.8 -4.81752 | AAAAACAGCTAAAAA CCGTCC TGAGCGT GGACAG CAATTACTTCTGGCT gspK 2875622 - 2876599 + | putative type II secretion protein TERM 3303 2877526 - 2877505 - g 71 -2.3 -5.00884 | overlap 2877507 ATGGCGCTGAAAAAA TATCGCC CACAGGCC GACGATA CCCGGCTGCTCGCCG gspL 2876914 - 2877774 + | GspL-like protein gspM 2877890 - 2878312 + | putative secretion pathway protein TERM 3304 2878366 - 2878340 - f 80 -6.7 -4.78753 | opp_overlap 2878343 TTAATATCAATAAAA TTACTCTCG TTGACGTGG CGAGAGTAA TTCCCCAGACTTTAT TERM 3305 2878445 - 2878429 - f 81 -5 -5.10154 | opp_overlap 2878429, overlap 2878423 ATCCAAAAGCAAAAA CCCGCC TTGGG GGCTGG TTCTTAAGAATTAGT TERM 3306 2878493 - 2878509 + F 73 -10.9 -2.62616 | opp_overlap 2878492 2878490 2878487 TCGAACCAAGGACAC GGGGATT TTC AATCCCC TGCTCTACCGACTGA insA 2879112 - 2879387 + | IS1 ORF1 insB 2879432 - 2879809 + | IS1 ORF2 TERM 3307 2880410 - 2880380 - f 73 -9.9 -3.41602 | opp_overlap 2880379 2880382 2880389 TTCACTGCAGGACAA CAGTAAAATCAGA GCGTT TCTGCTTTTACTG ATGTCTGGCGGTCGG TERM 3308 2880495 - 2880505 + F 79 -8.2 -4.21936 | CGGTATTCTTACTTC CCCG AAA CGGG TTTTGCGCTTATGAA TERM 3309 2880674 - 2880695 + G 90 -7.3 -5.0916 | overlap 2880661 TACGTTGCTTAAGCG CACCGGT TTTCATCT ACCGGTG TTTTTGTATTCCGAA TERM 3310 2880923 - 2880908 - g 77 -6.8 -4.56597 | opp_overlap 2880908 TGCGTTCTTTAAAAA GCATCC TGCC GGACGC CATTTTTACGATTTC TERM 3311 2881610 - 2881599 - g 82 -3 -5.29782 | CAGATCCATAAAAAA GATA ACCA TATC CGCGGACAGGCGCGT TERM 3312 2881611 - 2881624 + G 72 -5.2 -4.57569 | overlap 2881621 AAAGATAACCATATC CGCG GACAGG CGCG TTTTTGCCCGCATAA TERM 3313 2882342 - 2882331 - g 76 -3.6 -4.92363 | AAAGACCTACAAAAA GCGA TGTT CCGC CAGCAGAGTTTCCCG speC 2880516 - 2882651 + | ornithine decarboxylase TERM 3314 2882694 - 2882655 - T 100 -15.2 -3.81146 | opp_overlap 2882664, overlap 2882664 GTGTTGAAGTAAGAA TAAAAAAAACGGGTCACC TTCT GGCGACCCGTTTTTCTTT GCGTAATTAGCGGCT TERM 3315 2882664 - 2882685 + T 100 -11.5 -5.30616 | opp_overlap 2882655 2882664 TAAGAATAAAAAAAA CGGGTCACC TTCT GGCGACCCG TTTTTCTTTGCGTAA TERM 3316 2882685 - 2882664 - T 100 -13.7 -6.22691 | opp_overlap 2882664, overlap 2882655 TAAGAATAAAAAAAA CGGGTCACC TTCT GGCGACCCG TTTTTCTTTGCGTAA nupG 2884005 - 2882701 - | transport of nucleosides TERM 3317 2884125 - 2884148 + r 70 -10.3 -2.51471 | overlap 2884124 TATGGATAACATTTT TGCCCCTGA GCATCG TCAGGGGCG GTTAGTGGAATTATC mltC 2885241 - 2884159 - | murein transglycosylase C TERM 3318 2885272 - 2885299 + r 93 -6.3 -5.8096 | gap 1, opp_overlap 2885274, overlap 2885275 2885276 TGTTTGTTTTTATGC AAGTTGCCGGAG GCGTG CTCCGGC-ACTG TTTTTATTTTTTATC TERM 3319 2885275 - 2885297 + r 86 -9.1 -4.48934 | opp_overlap 2885274, overlap 2885272 2885276 TTGTTTTTATGCAAG TTGCCGGAG GCGTG CTCCGGCAC TGTTTTTATTTTTTA TERM 3320 2885276 - 2885296 + r 81 -12.6 -3.257 | opp_overlap 2885274, overlap 2885275 2885272 TGTTTTTATGCAAGT TGCCGGAG GCGTG CTCCGGCA CTGTTTTTATTTTTT yggX 2885578 - 2885303 - | hypothetical protein TERM 3321 2885396 - 2885416 + g 73 -4 -4.78981 | overlap 2885389 CAGCAGCTTGCGGTG CTCGGCAT TCATC ATGTTGAG TTTCTTTTCATTAAT mutY 2886658 - 2885606 - | adenine DNA glycosylase TERM 3322 2885830 - 2885853 + g 70 -6 -4.24342 | gap 1, opp_overlap 2885824, overlap 2885830 CGGCAGCAATCTGCC GT-TGCGCCAG CCA CTGCCGCAAAC TTTCTTCGTCGGCAA trmB 2886819 - 2887538 + | tRNA (guanine-N(7))-methyltransferase yggL 2887538 - 2887864 + | hypothetical protein TERM 3323 2888002 - 2888027 + F 70 -4.8 -4.44667 | gap 2, opp_overlap 2888002 2888005, overlap 2888005 2888007 GTACTTTGTTATCAA TCAGGGGCCAGC AAAT GCTGGCC--TGA TTTGTTCTTGAGGGA TERM 3324 2888007 - 2888024 + F 81 -12.7 -3.19055 | opp_overlap 2888005 2888002, overlap 2888005 2888002 TTGTTATCAATCAGG GGCCAGC AAAT GCTGGCC TGATTTGTTCTTGAG TERM 3325 2888077 - 2888061 - g 74 -8 -4.12188 | opp_overlap 2888060 2888061 CTATGATGCGCAAAA TGCTGC TGGCG GCAGCA CTTTCAGTGACGGCA TERM 3326 2888119 - 2888141 + G 73 -12 -2.82623 | overlap 2888116 2888121 CGCCGACTACCAGTG CAGCGTCACG CCG CGTGACGATG TGATTGTCAGCCCGC TERM 3327 2888690 - 2888671 - g 77 -6.4 -4.63184 | opp_overlap 2888670 AACCGAGTGGAAAAA GCAGGAAA AAGA TTTCCAGC AGTTTGGCAAAGATG yggN 2888048 - 2888767 + | hypothetical protein TERM 3328 2888783 - 2888805 + F 79 -9.2 -4.12315 | opp_overlap 2888783 TCCTCTATTTTAAGA CGGCATAATA CTT TTTTATGCCG TTTAATTCTTCGTTT TERM 3329 2889640 - 2889654 + G 83 -10 -4.09117 | opp_overlap 2889639 2889640 2889648 CTAAGCTGAATGAAC TGCCGA AAG TCGGCA TTGTTTATAACTACG ansB 2888943 - 2889989 + | L-asparaginase II TERM 3330 2889997 - 2890017 + F 100 -14.7 -4.74103 | opp_overlap 2889993 AGTACTAATCACCTC GCCCCGGTA TCG TGCCGGGGC TTTTTCACTTCAGAC TERM 3331 2890228 - 2890216 - g 71 -3.3 -4.76892 | opp_overlap 2890216 AGATCAATTCAAAAA GCAGT ATC ACAGC ATTCTCAAGCTTGAT yggM 2890106 - 2891113 + | putative alpha helix chain TERM 3332 2891207 - 2891176 - T 76 -11.6 -2.60392 | opp_overlap 2891185, overlap 2891175 CATCCGGCAATCAAC GTCTGATGCGACGC TAGC GCGTCTTATCAGAC CTACAACAGCTGCCA yggW 2892401 - 2891265 - | coproporphyrinogen III oxidase TERM 3333 2891539 - 2891551 + g 72 -6.2 -4.30576 | opp_overlap 2891537 2891539 CCTTGCATAAAACCA CGCG GATGA CGCG TTTTGGTGGTACGCA yggV 2892987 - 2892394 - | putative deoxyribonucleotide triphosphate pyrophosphatase TERM 3334 2892761 - 2892741 - G 84 -11.1 -3.73072 | overlap 2892728 AACGCGCGGAGTAAA TGCCCGGCG CGC CGCCAAGCA CATCTACCGCCAGAC yggU 2893285 - 2892995 - | hypothetical protein TERM 3335 2893060 - 2893075 + g 70 -3.9 -4.65895 | TTTTAATTTGTTTGT GGCGG CCAAGT TCGCC TTTTTCGATCACCAC yggT 2893848 - 2893282 - | putative resistance protein yggS 2894570 - 2893866 - | hypothetical protein TERM 3336 2893930 - 2893943 + gH 71 -9.5 -3.14468 | ACCATCGTGCTACCT GCCGC AATG GCGGC TTCCATATCGTCCGA TERM 3337 2894290 - 2894302 + gH 72 -4.7 -4.65916 | opp_overlap 2894285, overlap 2894288 2894300 CAGTCGAAATGCTCT GCCAC CAG GCGGC TTTTATTAGACTGCA TERM 3338 2894437 - 2894456 + gH 83 -5.7 -5.13722 | overlap 2894438 CCGGCATCAATGGCT TCTGCGA TGGCGC TCGCAGG TTTTGTTTTACTGAC TERM 3339 2894521 - 2894500 - GH 83 -12.3 -3.28791 | ATTTCTTCTGGAGAA CGGCCGCAA CGCG TTGCAGCCG CTGAGATTTTGTCCC yggR 2894543 - 2895568 + | putative protein transport TERM 3340 2895651 - 2895618 - TR 79 -8.1 -4.30933 | opp_overlap 2895628, overlap 2895619 TACAAAGGCAATAAA CGTCTGATGCGACGC TTGC GCGTCTTATCAGACC TACAACCGCTGCCAC TERM 3341 2895650 - 2895619 - TR 79 -11.6 -3.17475 | opp_overlap 2895628, overlap 2895618 ACAAAGGCAATAAAC GTCTGATGCGACGC TTGC GCGTCTTATCAGAC CTACAACCGCTGCCA yqgF 2896173 - 2895757 - | Holliday junction resolvase-like protein TERM 3342 2895802 - 2895819 + g 76 -7.7 -4.15044 | opp_overlap 2895795 AATAATAACCGCAGA GGCAGAG TCGA CTTTGCC TTTGTTGAGCGCCCG yqgE 2896736 - 2896173 - | hypothetical protein TERM 3343 2896808 - 2896768 - R 70 -2.3 -5.00616 | TCCTGGTTCAAAAAA GCAACAGCGCCCAGTATGC GTG GAAAGAAGGGCGCTGTCAC TCAGAGTCTCAACGA gshB 2897795 - 2896845 - | glutathione synthetase TERM 3344 2896906 - 2896886 - G 74 -11.2 -3.1552 | opp_overlap 2896884, overlap 2896884 TGGCATCCATTAACA TTCCGGTG ATCGA CACCGGAA ACTCTGCTTCAATCT yggJ 2898539 - 2897808 - | hypothetical protein TERM 3345 2898571 - 2898549 - R 72 -4.7 -4.71061 | opp_overlap 2898550, overlap 2898550 ACGCATAGTTAAAAA TCCGCGTCG TCTCC CCACGCGGT TGTTCGCGTGGGGTA endA 2899326 - 2898619 - | DNA-specific endonuclease I TERM 3346 2898830 - 2898846 + g 87 -4.3 -5.28942 | opp_overlap 2898799, overlap 2898815 GCACCGCGTGCACGC GCTGGTG GTT CGGCAGC TTTTTCTTTGAAATC TERM 3347 2899088 - 2899102 + g 71 -2.7 -4.77757 | overlap 2899089 ACGTGTTCCCACTCT ACGCG GCTGG CGCGG TTTTCATTTTTGCGC sprT 2899918 - 2899421 - | hypothetical protein galP 2901389 - 2899995 - | galactose-proton symport of transport system TERM 3348 2901470 - 2901451 - R 78 -6.5 -4.68994 | overlap 2901469 AGTACGACGTAAAAA GATGTGA AGCAAA TCACATC AGTGTAATCGCTTAC TERM 3349 2901803 - 2901785 - R 100 -11.7 -5.48213 | opp_overlap 2901785 GAGGTAAAAGAAAAA GGCCAGC GCGAG GCTGGCC TTTGAAAGCAGGTGA TERM 3350 2901785 - 2901803 + r 86 -11.7 -3.53444 | opp_overlap 2901785 GAGGTAAAAGAAAAA GGCCAGC GCGAG GCTGGCC TTTGAAAGCAGGTGA TERM 3351 2901840 - 2901869 + r 72 -2.7 -5.00616 | gap 1, overlap 2901847 ATTACTTCAGACCGG CAG-CATCGCGCAG CAG CTGCGCTTTGTCGG TTTTTTCCCACGGGA TERM 3352 2901847 - 2901861 + r 89 -11.4 -4.11869 | overlap 2901840 CAGACCGGCAGCATC GCGCAG CAG CTGCGC TTTGTCGGTTTTTTC metK 2902980 - 2901826 - | S-adenosylmethionine synthetase TERM 3353 2901905 - 2901917 + g 72 -5.5 -4.57482 | opp_overlap 2901905 TCACGACCAAAGTGA CCGTA TGC TGCGG TTTCTTTGTAGATCG TERM 3354 2902504 - 2902516 + g 91 -9.1 -4.59853 | GTCCGGGCGCAGCCA CGGCA GAG TGCCG TTTTTACGCACTTCA yqgD 2903036 - 2903287 + | hypothetical protein TERM 3355 2903281 - 2903271 - T 79 -8.2 -4.36914 | TTGTGGGGTATAAAA CGCG GCG CGCG GCTTAAATAAAAAGC TERM 3356 2903319 - 2903295 - T 76 -2.2 -5.27335 | gap 1, overlap 2903298 CGGCTTAAATAAAAA GC-ACACGA CGTTTCTT TCGTGTTGC CACTTCCAGCCGGGT yqgC 2903499 - 2903284 - | hypothetical protein TERM 3357 2903558 - 2903575 + H 81 -8.5 -4.52703 | opp_overlap 2903550 2903570, overlap 2903570 GACTGAACAAGGGCG CTCTTGT AAAA ACAAGAG TTTTCTCGTGGTTTC yqgB 2903620 - 2903766 + | hypothetical protein TERM 3358 2905446 - 2905456 + G 81 -6.8 -4.59342 | overlap 2905437 GATCCAGAGAATCCG CCGA TGC TCGG TTTCTTTATGGTCGG speA 2903775 - 2905751 + | arginine decarboxylase TERM 3359 2905765 - 2905804 + TF 85 -6.4 -5.1383 | overlap 2905769 AATTAAGATTATTCT GCTGGCGGGTCGATTTAT TTAC GTAAATCGGTCCGCTTTC TTTTTATATATTCTT TERM 3360 2905769 - 2905800 + TF 100 -12.4 -5.02777 | overlap 2905765 AAGATTATTCTGCTG GCGGGTCGATTTAT TTAC GTAAATCGGTCCGC TTTCTTTTTATATAT SDY_3136 2906313 - 2906026 - | hypothetical protein SDY_3135 2905897 - 2906169 + | hypothetical protein SDY_3137 2906508 - 2906903 + | iso-IS1 ORF2 SDY_3138 2907035 - 2907409 + | lipoprotein TERM 3361 2907509 - 2907477 - f 90 -14.9 -3.27525 | opp_overlap 2907477, overlap 2907472 GTTTCGCAAATCCAA CCCTTCCTCGTCG GGCCTAA CGACGCGGAAGGG TTTTTTTATATCGAC TERM 3362 2907477 - 2907509 + F 100 -14.9 -5.71712 | opp_overlap 2907472 2907477 GTTTCGCAAATCCAA CCCTTCCTCGTCG GGCCTAA CGACGCGGAAGGG TTTTTTTATATCGAC TERM 3363 2907585 - 2907597 + G 77 -3.4 -5.03314 | opp_overlap 2907578 ATAACTCACTGGTTT CCAA CGCCT TTGG TTTTTTACGCCTGCC TERM 3364 2907912 - 2907922 + G 72 -6.8 -4.1822 | GTATGCTCTCCTTCG GTGG TGA CCAC TTTGTTACGCTGCCG speB 2907545 - 2908465 + | agmatinase yggG 2909271 - 2908513 - | hypothetical protein TERM 3365 2909854 - 2909838 - g 83 -10.1 -4.13945 | opp_overlap 2909838, overlap 2909839 AGCTGCACTCTAAAA CTCCGGG CCA CCCGGAA GTGGGTTACACCGCT TERM 3366 2909853 - 2909839 - g 75 -11.4 -3.08046 | opp_overlap 2909838, overlap 2909838 GCTGCACTCTAAAAC TCCGGG CCA CCCGGA AGTGGGTTACACCGC tktA 2909549 - 2911540 + | transketolase TERM 3367 2911560 - 2911575 + T 100 -10.4 -5.5074 | opp_overlap 2911560 CATTTCGGGTAAAAA GGTCGC TTCG GCGACC TTTTTTATTACCTTG TERM 3368 2911575 - 2911560 - T 93 -10.4 -4.57073 | opp_overlap 2911560 CATTTCGGGTAAAAA GGTCGC TTCG GCGACC TTTTTTATTACCTTG SDY_3142 2912251 - 2911856 - | iso-IS1 ORF2 cmtB 2912628 - 2913071 + | putative mannitol phosphotransferase subunit EIIA cmtA 2913099 - 2914487 + | PTS system, mannitol-specific enzyme II component, cryptic SDY_3145 2914790 - 2915779 + | putative oxidoreductase TERM 3369 2915834 - 2915815 - f 85 -13.6 -3.05384 | overlap 2915817 TTTCGCGTTACGGAA CAGGCAGC GTTG GCTGCCTG GCCGCAAACCGGATG TERM 3370 2915832 - 2915817 - f 73 -10.4 -3.08679 | overlap 2915815 TCGCGTTACGGAACA GGCAGC GTTG GCTGCC TGGCCGCAAACCGGA TERM 3371 2915905 - 2915867 - f 76 -2.5 -5.35224 | overlap 2915869 2915871 GCGACAAAAATAAAA TTGATGGCCTGGCG-GTCA CCG CGATGCGCCAGG-CATTAA ACGACGTCGCTTTTC yggD 2916763 - 2917272 + | putative DNA-binding transcriptional regulator frcK 2917269 - 2917982 + | putative fructose transport system kinase SDY_3149 2918631 - 2917954 - | putative ATP-binding protein of ABC transport system TERM 3372 2918050 - 2918027 - G 81 -9.6 -4.11805 | opp_overlap 2918024 2918027 ACCACACGAGAGAAA TGACGCCG GGTAAATG CGGCGTCA TGATTGATTGCTACG TERM 3373 2918403 - 2918416 + g 78 -5.2 -4.7657 | opp_overlap 2918391, overlap 2918402 GTACGCCAATCTTTG CCGC GCGCTG GCGG TTTTTCAGGTTTTTC SDY_3150 2918900 - 2918625 - | hypothetical protein SDY_3151 2919302 - 2918910 - | putative ATP-binding protein of ABC transport system SDY_3152 2919997 - 2919290 - | hypothetical protein SDY_3153 2920576 - 2919998 - | hypothetical protein TERM 3374 2920345 - 2920296 - G 71 -9.3 -3.51411 | gap 2, overlap 2920292 AGGGTGCGAAACCAA CCCGCTCGCGCCAGCCAACCGGC GACCAG GCCGA-TGACCATCGCGA-CGGG TGCAAATGCGGCGGC SDY_3154 2921030 - 2920599 - | hypothetical protein TERM 3375 2920977 - 2920958 - G 74 -2.8 -5.02074 | gap 1, overlap 2920960 GTAGCTGGGAAAAAA CTTCCTGCC CGG GG-AGGAGG CGCAGTGCGTAAAAG epd 2921402 - 2922421 + | erythrose 4-phosphate dehydrogenase pgk 2922471 - 2923634 + | phosphoglycerate kinase TERM 3376 2923665 - 2923639 - f 90 -7.3 -5.37865 | gap 1, opp_overlap 2923644, overlap 2923640 2923644 CTAAGAAGTAAAAAA TCACAGGGCAGG GAAA CCTGCCCT-TGT TTCAGCGCGCTTTTA TERM 3377 2923664 - 2923640 - f 83 -10.8 -3.81092 | gap 1, opp_overlap 2923644, overlap 2923639 2923644 TAAGAAGTAAAAAAT CACAGGGCAGG GAAA CCTGCCCT-TG TTTCAGCGCGCTTTT TERM 3378 2923661 - 2923644 - f 81 -12.7 -3.27687 | opp_overlap 2923644, overlap 2923640 2923639 AAGTAAAAAATCACA GGGCAGG GAAA CCTGCCC TTGTTTCAGCGCGCT TERM 3379 2923644 - 2923661 + F 95 -12.7 -3.90922 | opp_overlap 2923644 2923640 2923639 AAGTAAAAAATCACA GGGCAGG GAAA CCTGCCC TTGTTTCAGCGCGCT fba 2923849 - 2924928 + | fructose-bisphosphate aldolase TERM 3380 2924953 - 2924969 + F 100 -11.5 -5.40072 | TTCTGCTTATCTCAA GGCCCGC TCT GCGGGTC TTTTTTTCGCCAAAA yggB 2925119 - 2925979 + | mechanosensitive channel MscS yggA 2926118 - 2926753 + | arginine exporter protein yggE 2926846 - 2927586 + | hypothetical protein TERM 3381 2927619 - 2927589 - T 79 -10.5 -3.50808 | gap 1, opp_overlap 2927588 2927587 2927592, overlap 2927587 TGCAGCACAATAATA CTTGTAGCCCGACG TATT CGTCGGGCTA-ATG CCTTTACCCAATATT TERM 3382 2927592 - 2927617 + T 81 -13.3 -2.64472 | opp_overlap 2927589 2927587, overlap 2927588 2927587 AGCACAATAATACTT GTAGCCCGACG TATT CGTCGGGCTAA TGCCTTTACCCAATA SDY_3161 2927939 - 2927724 - | hypothetical protein SDY_3162 2928134 - 2928529 + | iso-IS1 ORF2 ygfD 2929570 - 2928650 - | arginine/ornithine transport system ATPase TERM 3383 2929307 - 2929295 - G 72 -6.9 -4.1552 | opp_overlap 2929301, overlap 2929296 TACCGGGCGAATAAA CGCCG TCT CGGCA CGCGCCAGGTCATTC TERM 3384 2930912 - 2930902 - R 71 -6.8 -4.06419 | TCGCTCCATAAATAA CGTG CCG CACG CAACATGGCGACGTT TERM 3385 2931309 - 2931288 - R 74 -5.9 -4.57353 | gap 1, overlap 2931289 GGCGACGATATAAAA CGCCAGTACT GGT AGCACTG-CG CCATTCATGGGCATC TERM 3386 2931951 - 2931971 + r 70 -9.8 -3.0082 | opp_overlap 2931950 2931951, overlap 2931950 AGAAGTGAGGACAAC GCCTGATA TGTGC TATCAGGC ATTATTTGATGGATT iciA 2932878 - 2931985 - | chromosome replication initiation inhibitor protein TERM 3387 2932660 - 2932683 + g 72 -4.4 -4.70626 | overlap 2932662 TTCTTCCAGCAACTC CACCTGGCGC AGCA GTGCCAGCAG TTTTTGACCTTGTTC SDY_3166 2933385 - 2932990 - | iso-IS1 ORF2 SDY_3167 2933580 - 2933867 + | hypothetical protein TERM 3388 2934646 - 2934624 - g 72 -7 -4.20531 | GATAGCGATGGAAAA CGCCATAAAT GCG ATTCCTGGCG TGGTGACTGTTGGCT rpiA 2934073 - 2934732 + | ribose-5-phosphate isomerase A TERM 3389 2934759 - 2934733 - f 77 -11.6 -2.91873 | opp_overlap 2934726 2934724, overlap 2934730 ACCATTGTGAAATGA TCTGACGGGGGA ACC TCCCCCGTTAAA AAAATTCTCTTCATT TERM 3390 2934903 - 2934921 + F 79 -3.2 -5.27399 | overlap 2934906 TCGCGACGCAAACGT TCATATTG CCG CAATATTA TTTTTTGATATGTTG TERM 3391 2934906 - 2934918 + F 72 -4.9 -4.69962 | overlap 2934903 CGACGCAAACGTTCA TATTG CCG CAATA TTATTTTTTGATATG TERM 3392 2935556 - 2935543 - g 72 -4.5 -4.70515 | overlap 2935544 2935545 GATATTGAAAATAAA CTGCC GCTG GGCAA CGCCACTCAGGTACA serA 2934988 - 2936220 + | D-3-phosphoglycerate dehydrogenase TERM 3393 2936268 - 2936238 - T 76 -8.2 -4.07568 | opp_overlap 2936242, overlap 2936242 CCCCTTCTCTGAAAA TCAACGGGCAGGTC ACT GACTTGCCCGTTTT TTTATCCCTTCTCCA TERM 3394 2936242 - 2936264 + T 100 -15.6 -5.66684 | opp_overlap 2936238 2936242 TTCTCTGAAAATCAA CGGGCAGGTC ACT GACTTGCCCG TTTTTTTATCCCTTC TERM 3395 2936264 - 2936242 - T 95 -13.4 -3.66908 | opp_overlap 2936242, overlap 2936238 TTCTCTGAAAATCAA CGGGCAGGTC ACT GACTTGCCCG TTTTTTTATCCCTTC TERM 3396 2936424 - 2936405 - T 86 -11.4 -3.66178 | GGCTGTAACGGTAAA GCCCTCAC CGAA GCGAGGGC TTGAAGGAGAAGGGT ygfA 2937149 - 2936601 - | putative ligase TERM 3397 2936778 - 2936755 - G 86 -6.6 -4.91109 | GTCCGATCATAAAAA CCACCGCCCA TTCC CAGGCGCTGG CCGTACTCATCAAAG ygfE 2937778 - 2937449 - | Z-ring-associated protein ygfB 2937946 - 2938524 + | hypothetical protein TERM 3398 2938617 - 2938631 + G 75 -5.6 -4.72272 | opp_overlap 2938613 2938608, overlap 2938613 2938612 2938618 AGCAAATGCAACCCG GCAGCG CCG CGCTGA TTTTTGCTGCACCAG TERM 3399 2938618 - 2938630 + G 71 -9.1 -3.43042 | opp_overlap 2938613 2938608, overlap 2938613 2938612 2938617 GCAAATGCAACCCGG CAGCG CCG CGCTG ATTTTTGCTGCACCA pepP 2938550 - 2939875 + | proline aminopeptidase P II ubiH 2939872 - 2941050 + | 2-octaprenyl-6-methoxyphenyl hydroxylase TERM 3400 2941673 - 2941661 - g 73 -9.1 -3.67775 | ATTCGCACGGAAGAA CCGCA TGA TGCGG TGGTGCGGCAGGTTT visC 2941073 - 2942275 + | hypothetical protein TERM 3401 2942319 - 2942342 + F 79 -10.3 -3.49924 | overlap 2942338 CGCATCACACTTTCA TCTCCCGGT TTTTTC GCCGGGAGA TTCTCCTCATTTGAA gcvT 2942723 - 2943817 + | glycine cleavage system aminomethyltransferase T TERM 3402 2943924 - 2943901 - g 74 -8.8 -3.90744 | opp_overlap 2943900, overlap 2943887 TGGCTGCGTAAAGAA GCCGACGGCA CTTA TACCGTTGGC ATCACCGAACACGCT gcvH 2943841 - 2944230 + | glycine cleavage system protein H gcvP 2944348 - 2947221 + | glycine dehydrogenase TERM 3403 2947260 - 2947247 - f 75 -9.5 -3.56092 | opp_overlap 2947247 CGACTATCTTCTAAA GGCGC TTCG GCGCC TTTTTAGTCAGATGA TERM 3404 2947247 - 2947260 + F 100 -9.5 -4.7373 | opp_overlap 2947247 CGACTATCTTCTAAA GGCGC TTCG GCGCC TTTTTAGTCAGATGA TERM 3405 2948247 - 2948277 + F 74 -10.6 -3.18681 | gap 1, opp_overlap 2948240, overlap 2948249 ACAGGGAAGTTGTCT G-ACCGGATGCAA CAAGTA TTGCATCCGGTAC TTCATCGACTTAAAG TERM 3406 2948249 - 2948274 + F 82 -13.4 -2.79023 | opp_overlap 2948240, overlap 2948247 AGGGAAGTTGTCTGA CCGGATGCAA CAAGTA TTGCATCCGG TACTTCATCGACTTA yqfB 2949765 - 2950076 + | hypothetical protein SDY_3182 2950720 - 2950325 - | iso-IS1 ORF2 TERM 3407 2951609 - 2951592 - g 71 -9.1 -3.50572 | opp_overlap 2951591 2951592 2951597 ACGCATTCCATACAA CCATGCC ATCT GGCACGG CTTCGTGCTCGGCGG SDY_3183 2950999 - 2951673 + | putative oxidoreductase ygfZ 2952730 - 2951750 - | putative global regulator ygfY 2952973 - 2953239 + | hypothetical protein SDY_3186 2953220 - 2953627 + | hypothetical protein TERM 3408 2953660 - 2953631 - T 72 -8.5 -3.77188 | ACGCAAAGATAAAGA TGACGGCAAAGCA TATG CGCTAAGCCGTCA GTGAGATCAGGCGTA fldB 2954188 - 2953667 - | flavodoxin FldB xerD 2954300 - 2955196 + | site-specific tyrosine recombinase XerD TERM 3409 2955728 - 2955718 - g 84 -4 -5.19879 | TGCGAAAGACAAAAA CAAA GCG TTTG ATGATGTGATGGCAG dsbC 2955221 - 2955931 + | thiol:disulfide interchange protein DsbC TERM 3410 2956536 - 2956548 + G 70 -4.7 -4.58395 | GTTTTATCTGATGCT GGCGC TGC GCACC TTTTTGCGCGATCAG recJ 2955937 - 2957670 + | ssDNA exonuclease RecJ TERM 3411 2957692 - 2957718 + F 82 -11.7 -3.30903 | gap 1, opp_overlap 2957692 CCTCTCTATAAAAAA GAGCGTGGATTG GGTA CAATCC-CGCTC TTATCACCGCATTTT TERM 3412 2957718 - 2957692 - f 100 -11.7 -5.24129 | gap 1, opp_overlap 2957692 CCTCTCTATAAAAAA GAGCGTGGATTG GGTA CAATCC-CGCTC TTATCACCGCATTTT TERM 3413 2958101 - 2958089 - g 77 -3.3 -5.06414 | GCCCTGGAAGAAAAA CTAGC GCA GCTTG AGTTCCGCCGTATGT prfB 2957978 - 2958859 + | peptide chain release factor RF-2 lysS 2958869 - 2960386 + | lysyl-tRNA synthetase TERM 3414 2960407 - 2960424 + T 100 -10.5 -5.64421 | opp_overlap 2960407 ACGTTATGCTCACAA CCCCGGC AAAT GTCGGGG TTTTTTATTTAAGCT SDY_3193 2960977 - 2960429 - | isopentenyl-diphosphate delta-isomerase insA 2961191 - 2961466 + | IS1 ORF1 SDY_3195 2961724 - 2962026 + | IS600 ORF1 SDY_3196 2962167 - 2962934 + | IS600 ORF2 insB 2962936 - 2963157 + | IS1 ORF2 SDY_3198 2963537 - 2963217 - | hypothetical protein SDY_3199 2963732 - 2964127 + | iso-IS1 ORF2 TERM 3415 2964168 - 2964213 + T 79 -9.2 -4.11484 | gap 1, opp_overlap 2964160 2964175 2964181, overlap 2964173 2964175 2964176 2964178 GAATAAGGCTTTAGT GAAGCTAGCAGAAGTTGTCCA TGCGC TGGACAACTTCTGAT-GTTGC TTTTAACCAATTCCC TERM 3416 2964173 - 2964209 + T 95 -13.2 -3.67175 | opp_overlap 2964175 2964181, overlap 2964168 2964175 2964176 2964178 AGGCTTTAGTGAAGC TAGCAGAAGTTGTCCA TGCGC TGGACAACTTCTGATG TTGCTTTTAACCAAT TERM 3417 2964175 - 2964207 + T 90 -13.6 -3.41359 | opp_overlap 2964175 2964181, overlap 2964173 2964168 2964176 2964178 GCTTTAGTGAAGCTA GCAGAAGTTGTCCA TGCGC TGGACAACTTCTGA TGTTGCTTTTAACCA TERM 3418 2964207 - 2964175 - T 83 -13.6 -2.54896 | opp_overlap 2964173 2964168 2964175 2964176 2964178, overlap 2964181 GCTTTAGTGAAGCTA GCAGAAGTTGTCCA TGCGC TGGACAACTTCTGA TGTTGCTTTTAACCA TERM 3419 2964176 - 2964206 + T 100 -17.1 -2.64333 | opp_overlap 2964175 2964181, overlap 2964175 2964173 2964168 2964178 CTTTAGTGAAGCTAG CAGAAGTTGTCCA TGCGC TGGACAACTTCTG ATGTTGCTTTTAACC TERM 3420 2964178 - 2964204 + T 84 -13.9 -2.85583 | opp_overlap 2964175 2964181, overlap 2964176 2964175 2964173 2964168 TTAGTGAAGCTAGCA GAAGTTGTCCA TGCGC TGGACAACTTC TGATGTTGCTTTTAA TERM 3421 2964201 - 2964181 - T 73 -9.8 -3.44319 | opp_overlap 2964178 2964176 2964175 2964173 2964168, overlap 2964175 GTGAAGCTAGCAGAA GTTGTCCA TGCGC TGGACAAC TTCTGATGTTGCTTT ygiE 2964989 - 2964216 - | zinc transporter ZupT TERM 3422 2965951 - 2965924 - R 82 -12 -3.32819 | opp_overlap 2965918 2965925, overlap 2965927 CAGATAGGCTCACAA TTACCGGATGGC GAAT GCCATCCGGCAT CATTGATTATTCAAC TERM 3423 2965925 - 2965950 + r 82 -13.3 -2.89971 | opp_overlap 2965924 2965927, overlap 2965918 AGATAGGCTCACAAT TACCGGATGGC GAAT GCCATCCGGCA TCATTGATTATTCAA TERM 3424 2965948 - 2965927 - R 93 -15.9 -2.83449 | opp_overlap 2965925 2965918, overlap 2965924 ATAGGCTCACAATTA CCGGATGGC GAAT GCCATCCGG CATCATTGATTATTC ygiC 2967118 - 2965958 - | putative synthetase/amidase TERM 3425 2967056 - 2967012 - G 70 -10.2 -3.16742 | gap 1, opp_overlap 2967025, overlap 2967015 GTCAACTTGTAGTAA GCATCTTCACACCA-GTACGG CTCG CCGTACATGGTGTGAAAATTG AAACCGTATTCGTGG TERM 3426 2967053 - 2967015 - G 100 -16.3 -2.78395 | gap 1, opp_overlap 2967025, overlap 2967012 AACTTGTAGTAAGCA TCTTCACACCA-GTACGG CTCG CCGTACATGGTGTGAAAA TTGAAACCGTATTCG ygiB 2967795 - 2967124 - | hypothetical protein TERM 3427 2967158 - 2967176 + gr 70 -5.2 -4.41348 | opp_overlap 2967149 GAAGAGGTACCGGTT GCGCTACG CTG CATAGTGC TTTGTTTGGCAACAG TERM 3428 2967265 - 2967295 + gr 88 -8.3 -4.59773 | gap 1, overlap 2967265 2967267 TGTCTTCGGTACGGT C-ATGGTGCGGCCT GGCT GGGCTGCGCCATAG TTTTTACCCGTCGCG TERM 3429 2967267 - 2967292 + gr 77 -11.1 -3.24422 | overlap 2967265 2967265 TCTTCGGTACGGTCA TGGTGCGGCCT GGCT GGGCTGCGCCA TAGTTTTTACCCGTC TERM 3430 2967451 - 2967466 + gr 70 -4.6 -4.46926 | ACTCCCGCTGGATTG CTGGGC CTGC GCCTGG TTTTCTGGTGCCATG TERM 3431 2967716 - 2967705 - GR 71 -2.2 -4.9218 | overlap 2967707 CAGCCAGCATAAAAA CAGT GGCA ACCG CGAGAGCGACTGGTG ygiA 2967943 - 2967683 - | hypothetical protein tolC 2969424 - 2967943 - | outer membrane channel protein TERM 3432 2970234 - 2970182 - g 72 -6.9 -4.20712 | overlap 2970190 TAGAAGAGGGGAAAA TCGACAACGCAGCGTCGGTCATCGC TTT GCAATGGCTGCAGCTGCATCATCAA GCGTTAAAAAATGAG nudF 2969629 - 2970258 + | ADP-ribose pyrophosphatase NudF TERM 3433 2970592 - 2970582 - g 83 -5.4 -5.08601 | TTATCCTAATAAAAA GTTG CAT CAAC GCGACGAAAAGCATC yqiB 2970259 - 2970681 + | hypothetical protein icc 2970706 - 2971533 + | cyclic 3',5'-adenosine monophosphate phosphodiesterase yqiA 2971533 - 2972114 + | esterase YqiA TERM 3434 2972414 - 2972439 + G 78 -10.5 -3.48395 | CGGTTGAACTGATTC TTTGCCGTCTG CATG CAGGCGGTAAA TTCTCTAACAAAAAT parE 2972143 - 2974035 + | DNA topoisomerase IV subunit B TERM 3435 2974073 - 2974045 - T 71 -7.3 -4.15396 | overlap 2974047 GTTTAAAGGAAAGAA CATTGCCCGGTCA GGA TGGCCGGGCAAAC AAGGCAGGTTTAAAT TERM 3436 2974071 - 2974047 - T 100 -14.3 -3.66578 | overlap 2974045 TTAAAGGAAAGAACA TTGCCCGGTCA GGA TGGCCGGGCAA ACAAGGCAGGTTTAA ygiN 2974397 - 2974083 - | hypothetical protein mdaB 2975009 - 2974428 - | modulator of drug activity B TERM 3437 2974755 - 2974769 + g 77 -2.9 -5.1287 | GTGACCTTCGGTGAA TACAT CATCA ATGTA TTTTTTCACTGTCCA TERM 3438 2974891 - 2974947 + g 81 -12.4 -3.18199 | gap 2, opp_overlap 2974897 2974900, overlap 2974895 TCGGCGCGAACGATG CGAACATCATGCCCGAGGTCGCGCAGTG TGC CA-TCCGCGACTTCGGTCAGGGTG-TCG TTCAGTTGACCATTG TERM 3439 2974895 - 2974944 + g 81 -12.9 -2.78712 | gap 1, opp_overlap 2974897 2974900, overlap 2974891 CGCGAACGATGCGAA CATCATGCCCGAGGTCGCGCAGTG TGC CA-TCCGCGACTTCGGTCAGGGTG TCGTTCAGTTGACCA qseC 2976468 - 2975119 - | sensor protein QseC TERM 3440 2976216 - 2976237 + g 70 -3.7 -4.72863 | TGGCAAAGGTCAGCG CATCGTCAT CAAC ATGACCGTG TTTTAATTTATTTGG ygiX 2977124 - 2976465 - | DNA-binding transcriptional regulator QseB ygiW 2977276 - 2977668 + | hypothetical protein SDY_3216 2977721 - 2978203 + | hypothetical protein TERM 3441 2978632 - 2978649 + G 72 -5.5 -4.46926 | overlap 2978633 GTGGTCCGACGGTCA GCCTCTG ACGG CAGAGGA TTTTGTCCTCGGCTG SDY_3217 2978312 - 2979919 + | putative binding protein TERM 3442 2979928 - 2979954 + F 75 -11.5 -3.0497 | ACATTGATGCCTTTA TCGCCGTCGGA GCACG TCCGGCGGCGC TATTCACGCTGATCT TERM 3443 2980886 - 2980865 - g 84 -10.9 -3.74693 | GCGTACTGGAGCAAA TTGCTGCGC AAAT GCGCAACAA AAAGCTGCCGATGGT parC 2980057 - 2982315 + | DNA topoisomerase IV subunit A plsC 2982549 - 2983286 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase sufI 2983361 - 2984773 + | repressor protein for FtsI TERM 3444 2984770 - 2984810 + T 86 -9.3 -4.42081 | gap 2, overlap 2984774 2984775 AGTCAATCCGGTACC GTAATCTTCATACTCGCCC GAGGA GGGCGAGTATGGA-A-TAC TTTTCGATTTCTCTT TERM 3445 2984774 - 2984809 + T 71 -9.9 -3.23622 | gap 1, overlap 2984770 2984775 AATCCGGTACCGTAA TCTT-CATACTCGCCC GAGGA GGGCGAGTATGGAATA CTTTTCGATTTCTCT TERM 3446 2984775 - 2984807 + T 81 -12.8 -3.16695 | overlap 2984774 2984770 ATCCGGTACCGTAAT CTTCATACTCGCCC GAGGA GGGCGAGTATGGAA TACTTTTCGATTTCT TERM 3447 2986032 - 2986055 + T 76 -8 -4.31164 | overlap 2986034 TTCGGTCAACATTAT GCGCGGCTGC TTTG GCGGCTGCTC TTTCTGTTCTATCAC TERM 3448 2986034 - 2986053 + T 76 -9.2 -3.75093 | overlap 2986032 CGGTCAACATTATGC GCGGCTGC TTTG GCGGCTGC TCTTTCTGTTCTATC TERM 3449 2987045 - 2987033 - T 84 -4.8 -5.44119 | GCTACGGCAAAAAAA GCGT CGTCT ACGC AATCTCGTCCGGTGA TERM 3450 2987111 - 2987138 + T 100 -12.7 -5.73339 | opp_overlap 2987111 GGACGTTAAAAAAAA TCCCCGGCAAC TGACAT GCTGCCGGGGA TTTTTTTATCATTCT TERM 3451 2987138 - 2987111 - T 100 -14.9 -5.78622 | opp_overlap 2987111 GGACGTTAAAAAAAA TCCCCGGCAAC TGACAT GCTGCCGGGGA TTTTTTTATCATTCT yqhH 2987404 - 2987147 - | putative outer membrane lipoprotein SDY_3223 2988052 - 2987453 - | hypothetical protein TERM 3452 2987749 - 2987763 + g 78 -7.8 -4.37092 | CATCGGGATTGTTGG CCGCCT TGA AGGTGG TTTTATAGAAGGCAT insB 2988490 - 2988113 - | IS1 ORF2 insA 2988810 - 2988535 - | IS1 ORF1 TERM 3453 2989092 - 2989071 - R 89 -5.9 -5.65496 | gap 1, opp_overlap 2989071 CAGGAAAAATAAAAA CCGAAGCCTG CTA CAA-CTTCGG TTTCTTGATTAAGGC ribB 2989781 - 2989128 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 3454 2989496 - 2989524 + g 90 -10.3 -4.41206 | opp_overlap 2989501 CTTCAATGGTCACGG TAAAACCGGTGCC ATA GGCGCTGGTGTTA TTTTCTACCATCATT SDY_3227 2990095 - 2990454 + | hypothetical protein TERM 3455 2990483 - 2990468 - T 100 -11.8 -5.16206 | opp_overlap 2990468 AAAGCAACACAAAAA CGGGCC AGAC GGCCCG TAATATCAGTGTTCT TERM 3456 2990468 - 2990483 + T 76 -11.8 -2.67055 | opp_overlap 2990468 AAAGCAACACAAAAA CGGGCC AGAC GGCCCG TAATATCAGTGTTCT glgS 2990689 - 2990489 - | glycogen synthesis protein GlgS SDY_3229 2991101 - 2990706 - | iso-IS1 ORF2 insB 2991998 - 2991621 - | IS1 ORF2 insA 2992318 - 2992043 - | IS1 ORF1 SDY_3232 2992633 - 2992421 - | hypothetical protein SDY_3233 2992828 - 2993223 + | iso-IS1 ORF2 TERM 3457 2993324 - 2993311 - g 70 -6.7 -4.07568 | TTTGTGCGGGTAAAA CCTTC AGTA GAAGG GATTGCCACCGCTGC TERM 3458 2994212 - 2994196 - g 72 -4.4 -4.59919 | gap 1, opp_overlap 2994196, overlap 2994197 AAAGCAGAAAAAGAA GCC-GCA GAGA TGCAGGC GGCGGCTATCGTTGA TERM 3459 2994283 - 2994271 - g 71 -9.1 -3.50853 | CTGGCGGAAGCAGAA GCGCA ACG TGCGC TGAACGATGCTATCA SDY_3234 2993224 - 2994642 + | hypothetical protein TERM 3460 2994660 - 2994682 + T 79 -2.6 -5.4251 | opp_overlap 2994660 TTTCAGCTATGAACA TCCCTAGC ACAAAAC GCCGGGGA TTTTTTATATCTGCG TERM 3461 2994861 - 2994842 - T 86 -11.4 -3.71649 | overlap 2994825 GGCTGAAACGGGAAA GCCCCTCC CGAA GAAGGGGC CTTACAGAAGGAAAG TERM 3462 2995036 - 2995058 + T 100 -8.4 -5.4251 | opp_overlap 2995034 2995032 2995036 TTTCATTAACACATA TCCCTGGC CCAAAAA GCCGGGGA TTTTTTATATCTGCG TERM 3463 2995237 - 2995218 - T 86 -11.4 -3.71649 | opp_overlap 2995218 2995217, overlap 2995201 2995211 GGCTGAAACGGGAAA GCCCCTCC CGAG GAAGGGGC CTTATAGAAGGAAAG SDY_3235 2996869 - 2995436 - | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase glnE 2999757 - 2996917 - | bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase TERM 3464 2997910 - 2997885 - G 72 -11.1 -3.04144 | opp_overlap 2997877 2997871 2997902 2997907 CGGCGATGCGTAACA GCTGCGCCTGT TTGA ACTGACGCAGC GCCTCAAGCTGTTGC TERM 3465 2998932 - 2998915 - G 70 -4 -4.6951 | ACGACGGAAAACAAA CGGGCG CAGCAT CGCACG CAACTCGTTAGCATA TERM 3466 2999181 - 2999167 - G 74 -2.8 -5.0133 | CATGCGGGTAAAAAA CTGG GCGTTAT CCAG TTCCCGGCGTCCACC ygiF 3001081 - 2999780 - | hypothetical protein TERM 3467 3000136 - 3000110 - G 70 -3.6 -4.65895 | opp_overlap 3000097 TTTGGCATCTAAAAA TGGCTGCCATGC TTT GCTTACCAACCA TTCGGTCAACGCCAG TERM 3468 3001755 - 3001745 - g 83 -5.4 -5.093 | GTTAAAAGAAGAAAA TCAG AAA CTGA AAAACGAGCTGATTG ygiM 3001323 - 3001943 + | putative signal transduction protein TERM 3469 3002113 - 3002140 + G 95 -11.2 -4.47397 | overlap 3002114 CACAGGAGATGCTCG ACGCGGGCTACC ACCA GGTAGGCCGCGA TTTTCCTGTGTTTCT TERM 3470 3002114 - 3002139 + G 95 -14.7 -3.26811 | overlap 3002113 ACAGGAGATGCTCGA CGCGGGCTACC ACCA GGTAGGCCGCG ATTTTCCTGTGTTTC TERM 3471 3002212 - 3002224 + G 82 -9.1 -4.22652 | opp_overlap 3002199 AACGGAAATCCGGCT CCGGT TAC ACCGG TTTTACCTGCTATGC TERM 3472 3002415 - 3002425 + G 78 -8.2 -4.2679 | overlap 3002414 3002415 CCGTTACGCGTACTG CGCG TGG CGCG TTTTGCTGCGCGTTA TERM 3473 3002598 - 3002619 + G 75 -5.1 -4.63218 | gap 1 TTCTTCCAGGTACTG CGCG-ATTGC GGC GCACTTCGCG TTTTATTCCCGGAAA TERM 3474 3002818 - 3002784 - g 71 -9.3 -3.54741 | gap 1, opp_overlap 3002802 3002804, overlap 3002785 3002787 CACGATCTCGGTAAA GGACTGACGCCGCCAG AACT CTGGCCGCGTCA-TCA TGGTCATGGCCCGGC TERM 3475 3002817 - 3002785 - g 77 -12.8 -2.7263 | gap 1, opp_overlap 3002802 3002804, overlap 3002784 3002787 ACGATCTCGGTAAAG GACTGACGCCGCCAG AACT CTGGCCGCGTCA-TC ATGGTCATGGCCCGG TERM 3476 3002816 - 3002787 - g 78 -12.1 -2.90813 | opp_overlap 3002802 3002804, overlap 3002785 3002784 GATCTCGGTAAAGGA CTGACGCCGCCAG AACT CTGGCCGCGTCAT CATGGTCATGGCCCG cca 3002007 - 3003245 + | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase folB 3004690 - 3004319 - | bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase ygiH 3004792 - 3005409 + | putative glycerol-3-phosphate acyltransferase PlsY SDY_3244 3006380 - 3006775 + | iso-IS1 ORF2 TERM 3477 3008227 - 3008212 - f 86 -4 -5.56263 | gap 1 AGCAGAAAACAAAAA GCTGTTC GCC GAAC-GC CGCGATCCCATCGTG TERM 3478 3008286 - 3008306 + F 84 -8.3 -4.57073 | opp_overlap 3008279 3008280 TCAAATAACCCTCCC GGAGAGG CTCGCCC CCTCTCC TTTTTCGCAGGCATA TERM 3479 3008492 - 3008528 + G 71 -11 -2.91912 | gap 1, overlap 3008496 CCCGTGCCGGGTGCC GTGGTGGCGATGGTGGG TATA TCCATCATCGCCAT-AC TCTCTCCCTGGCTGC TERM 3480 3008496 - 3008525 + G 90 -15.1 -2.7035 | overlap 3008492 TGCCGGGTGCCGTGG TGGCGATGGTGGG TATA TCCATCATCGCCA TACTCTCTCCCTGGC TERM 3481 3008732 - 3008722 - g 72 -5.4 -4.57073 | GATTCTGGTGAAAAA GATG GGG CATC GCACGCTGTTTCTTG ygjE 3008327 - 3009790 + | hypothetical protein ygjD 3010846 - 3009833 - | O-sialoglycoprotein endopeptidase TERM 3482 3009966 - 3009991 + g 84 -3.9 -5.243 | gap 1, overlap 3009964 GTACAAAATTCCGGA CGC-GCGTAGAA CAC TTCGCCGCGGCG TTTTTTCATCATTTC TERM 3483 3010470 - 3010460 - G 72 -6.8 -4.19336 | AAGCAGCGCAACAAA CGGA AAT TCCG GCGGGTTATCTTCCA TERM 3484 3010765 - 3010780 + g 71 -3.2 -4.78107 | CCTGACTATACAATT GGTTGG CTAA CAAACC TTTTTCATCGTCGTA TERM 3485 3011051 - 3011034 - H 74 -8.4 -3.9281 | ACCATTTTGAAATAA GCTGGC GTTGAT GCCAGC GGCAAACCGAATTAA rpsU 3011084 - 3011299 + | 30S ribosomal protein S21 TERM 3486 3011343 - 3011376 + F 82 -7.6 -4.62475 | overlap 3011347 ACCGAGTTGTAGTTG TAAGGCCGTGC-TTCC GAAA GGAATGCGCGGC-TTA TTTTCGTTTATGAAT TERM 3487 3011347 - 3011373 + F 95 -10.9 -4.40882 | gap 1, overlap 3011343 AGTTGTAGTTGTAAG GCCGTGC-TTCC GAAA GGAATGCGCGGC TTATTTTCGTTTATG TERM 3488 3011861 - 3011846 - g 70 -3.9 -4.60487 | CAGTATCTGGAAAAA CGCGG ATTAAG CCACG AGGTTATCGCCCGCT TERM 3489 3012743 - 3012710 - g 70 -5.9 -4.20696 | opp_overlap 3012710 3012721, overlap 3012702 CGATTAATGCCAAAA GCGGCAGAGAGCG GCGTTTCT CGCCCTGTTCCGC AGCTAAAACGCACGA dnaG 3011411 - 3013156 + | DNA primase TERM 3490 3014124 - 3014104 - g 73 -9.1 -3.60948 | GAAGAGATCCTGAAA CTGTCTGAA GTA TTCAAACAG TTCCGCCTGGTGCCG rpoD 3013351 - 3015192 + | RNA polymerase sigma factor RpoD TERM 3491 3015266 - 3015248 - T 95 -11.7 -3.85698 | opp_overlap 3015248 GTCCCTTTGCACAAA CGCCACC TTTTC GGTGGCG TTTTTTATCGCCCAC TERM 3492 3015248 - 3015266 + T 100 -11.7 -5.24129 | opp_overlap 3015248 GTCCCTTTGCACAAA CGCCACC TTTTC GGTGGCG TTTTTTATCGCCCAC ygjF 3015777 - 3015271 - | G/U mismatch-specific DNA glycosylase TERM 3493 3016010 - 3015989 - R 100 -14.5 -3.91597 | opp_overlap 3015989 ACCATATATAGCAAA GGCTGACGA GAAA TCGTCAGCC TTTTTCTTTTTATAT TERM 3494 3015989 - 3016010 + r 100 -14.5 -5.71295 | opp_overlap 3015989 ACCATATATAGCAAA GGCTGACGA GAAA TCGTCAGCC TTTTTCTTTTTATAT yqjH 3016795 - 3016031 - | hypothetical protein TERM 3495 3017206 - 3017249 + G 77 -6.6 -4.49556 | gap 1, overlap 3017216 CATGAACACGGTCAA TGTTG-CGGTGGTCGCCACGG TCG CGGCGGCGGTCGTCGGCAACG TTTCTTTGGTCACGG TERM 3496 3017670 - 3017655 - g 100 -3.3 -5.72622 | opp_overlap 3017662 TGCACAAATAAAAAA GATCA TTGCGG TGATC GACCGCGCCGCTTTT yqjI 3017083 - 3017706 + | hypothetical protein TERM 3497 3017748 - 3017779 + T 76 -11.6 -2.64099 | opp_overlap 3017757 3017759, overlap 3017747 CTACATACCCCGTAG GCCTGATAAGATGC GCCA GCATCGCATCAGGC ATTGTGCTCCAACCG TERM 3498 3017828 - 3017857 + T 82 -11.3 -3.57144 | TTAATGGAGCACCGT CACCGCGTCTTCC AGTC GGCTGGCGCGGTG TTTCACCATCGCCGA aer 3019333 - 3017813 - | aerotaxis sensor receptor, flavoprotein TERM 3499 3019543 - 3019524 - R 74 -5.8 -4.57073 | gap 1, overlap 3019527 TATCTTGCCCAAAAA TCA-GGCAA TTA TTGCCCTGA AAACGTGCATTTGCG TERM 3500 3021136 - 3021168 + r 100 -12.8 -4.85599 | opp_overlap 3021138, overlap 3021138 AGAAGCGTAGTATCA AATCGGATGGCGAT ACGAC GTCGCCATCCGATC TTTTTATACGATACG TERM 3501 3021138 - 3021166 + r 100 -15.4 -4.05067 | opp_overlap 3021138, overlap 3021136 AAGCGTAGTATCAAA TCGGATGGCGAT ACGAC GTCGCCATCCGA TCTTTTTATACGATA TERM 3502 3021166 - 3021138 - R 100 -14.7 -3.79519 | opp_overlap 3021136 3021138 AAGCGTAGTATCAAA TCGGATGGCGA TACGACG TCGCCATCCGA TCTTTTTATACGATA ygjH 3021504 - 3021172 - | hypothetical protein TERM 3503 3021367 - 3021380 + g 71 -2.3 -5.00884 | overlap 3021352 CGGCACCAGGCTGGT CACGG TTTG CAGTG TTTTTTCCCCCACAT TERM 3504 3022235 - 3022255 + G 72 -4.6 -4.64676 | opp_overlap 3022235 CGACTTCTATATCAA CCAGGGCG TTAAT CGCATTGG TTTTATTGGCGGTGA TERM 3505 3022650 - 3022632 - g 95 -10.2 -4.72272 | opp_overlap 3022644 CTGGTGTATGAAAAA GCCCGCGA TGG TCGCGCGC TGCCGCTGTTAGTCT ebgR 3021723 - 3022706 + | DNA-binding transcriptional repressor EbgR TERM 3506 3022713 - 3022755 + T 84 -7.8 -4.73614 | gap 1, opp_overlap 3022720, overlap 3022714 3022715 ACCCGTTAAATCCCC TTACA-CACTGTCCGGCAA TCATTT TTGCCGGACAGTGCTGCCG TTTATTTTCGTGATC TERM 3507 3022714 - 3022754 + T 70 -9.1 -3.43084 | gap 1, opp_overlap 3022720, overlap 3022713 3022715 CCCGTTAAATCCCCT TACA-CACTGTCCGGCAA TCATTT TTGCCGGACAGTGCTGCC GTTTATTTTCGTGAT TERM 3508 3022715 - 3022753 + T 78 -12.6 -2.64766 | gap 1, opp_overlap 3022720, overlap 3022714 3022713 CCGTTAAATCCCCTT ACA-CACTGTCCGGCAA TCATTT TTGCCGGACAGTGCTGC CGTTTATTTTCGTGA TERM 3509 3022747 - 3022720 - T 93 -15.7 -2.8806 | opp_overlap 3022715 3022714 3022713 AAATCCCCTTACACA CTGTCCGGCAA TCATTT TTGCCGGACAG TGCTGCCGTTTATTT TERM 3510 3023029 - 3023041 + T 88 -7.7 -5.03314 | GCCCTTAAGCGGTCA GTGGA ATT TCCAC TTTTTTGACCATCCG TERM 3511 3023712 - 3023699 - T 73 -4.5 -4.74103 | opp_overlap 3023699 TTGGCAATTGAAAAA CTGAC CAGC GCCAG CTTTGCTTTTACTGT TERM 3512 3024853 - 3024831 - T 71 -7.6 -3.8647 | ACGCAGCAGATTAAA CTGCGCGACG TTG CGCCGAACAG CGAAGCCCCCTTGCA SDY_3261 3025934 - 3025539 - | iso-IS1 ORF2 TERM 3513 3026317 - 3026353 + H 76 -8.3 -4.04922 | opp_overlap 3026312, overlap 3026319 TAAAAAATGAGCAGG C-ATTTTCCCTCTTCCT AGATG AGGA-GAGGGAAAATAG TTTCTGCCTTTATAT TERM 3514 3026319 - 3026350 + H 75 -11.1 -3.05274 | gap 1, opp_overlap 3026312, overlap 3026317 AAAAATGAGCAGGCA TTTTCCCTCTTCCT AGATG AGGA-GAGGGAAAA TAGTTTCTGCCTTTA TERM 3515 3028105 - 3028082 - g 78 -8.2 -4.15833 | gap 1 ACTACCAGCGCAAAA TCAGCGCCACC CGT GATGGC-CTGA AAGTCACCTTTGGCA TERM 3516 3029075 - 3029095 + G 76 -9 -3.7278 | gap 1, overlap 3029086 CTGCATCGTGGGAAT CGG-GGCGT GATG ACGCCGCCG TCTTTGGTTTTATCG TERM 3517 3029086 - 3029097 + G 70 -5.8 -4.26881 | overlap 3029075 GAATCGGGGCGTGAT GACG CCGC CGTC TTTGGTTTTATCGAC ygjK 3027514 - 3029865 + | glycosyl hydrolase TERM 3518 3030854 - 3030879 + G 82 -2.6 -5.40072 | gap 1, opp_overlap 3030854 3030857, overlap 3030856 3030857 GGTCTGAGCTGCAAA GCA-CTGAACC GTTCA GGTTCAGTTTC TTTTTTTCCAGCCAC TERM 3519 3030857 - 3030875 + G 100 -8.9 -5.20328 | opp_overlap 3030854 3030857, overlap 3030856 3030854 CTGAGCTGCAAAGCA CTGAACC GTTCA GGTTCAG TTTCTTTTTTTCCAG SDY_3264 3030250 - 3031689 + | hypothetical protein TERM 3520 3031858 - 3031839 - f 79 -10 -3.66896 | opp_overlap 3031851, overlap 3031836 TCCATATACAGATAA GACGCGAC AAGC GTCGCATC CGGCATTTCCAATGG ygjL 3031993 - 3034011 + | putative NADPH dehydrogenase ygjM 3034472 - 3034056 - | hypothetical protein TERM 3521 3034731 - 3034692 - R 75 -10 -3.57561 | opp_overlap 3034706, overlap 3034693 3034696 GGGTAATGTGCTAAA CGTATGCCAGATAAGGCG TTTA CGCCTTATCTGGCAGGTA GCTGTCAATCTTACC TERM 3522 3034730 - 3034693 - R 73 -11.3 -2.74322 | opp_overlap 3034706, overlap 3034692 3034696 GGTAATGTGCTAAAC GTATGCCAGATAAGGCG TTTA CGCCTTATCTGGCAGGT AGCTGTCAATCTTAC TERM 3523 3034727 - 3034696 - R 100 -21.8 -2.64651 | opp_overlap 3034706, overlap 3034693 3034692 AATGTGCTAAACGTA TGCCAGATAAGGCG TTTA CGCCTTATCTGGCA GGTAGCTGTCAATCT ygjO 3035908 - 3034742 - | putative enzyme TERM 3524 3035391 - 3035407 + g 74 -6.5 -4.58283 | CATGCCAGCGTGGTG GTGGTCG GGC CGAGCAC TTTTTCGAACAGTTC ygjP 3035927 - 3036466 + | hypothetical protein SDY_3269 3036700 - 3036497 - | hypothetical protein SDY_3270 3036895 - 3037290 + | iso-IS1 ORF2 TERM 3525 3038860 - 3038842 - g 70 -3.8 -4.65895 | opp_overlap 3038842 CTGGTGATTGAAAAA CTGTCTGA ATG CCAGAAAG TTTGCTTTGTGCCGC ygjR 3038071 - 3039075 + | hypothetical protein TERM 3526 3039233 - 3039252 + F 100 -10.8 -5.56673 | opp_overlap 3039233 CCGGGCAACCCGAAA GGAATACG CAGA CGTATTCC TTTTTTGTTGTAAGT TERM 3527 3039252 - 3039233 - f 83 -10.8 -3.66178 | opp_overlap 3039233 CCGGGCAACCCGAAA GGAATACG CAGA CGTATTCC TTTTTTGTTGTAAGT TERM 3528 3039308 - 3039333 + F 100 -13.3 -5.76633 | opp_overlap 3039307 3039305 3039308 ATGCATAAAAAGCAG CGGCTGACGTC TTCC GACGTTGGCCG TTTTTTTATGTGTAA ygjT 3039358 - 3040323 + | putative transport protein ygjU 3040877 - 3042121 + | serine/threonine transporter SstT TERM 3529 3042130 - 3042154 + T 100 -12.1 -4.6468 | TAATTAATTGTTTAA CCCCTTTCGTC TAT GGCGGGAGGGG TTTTCTCTACTTTAA ygjV 3042665 - 3042126 - | hypothetical protein TERM 3530 3042732 - 3042708 - R 95 -12.9 -4.21922 | opp_overlap 3042708 GTATGGAAAAGCAAA CGGCGCTTCAC ATT ATGAAACGCCG TTTTTTATTAACAAC TERM 3531 3042708 - 3042732 + r 100 -10 -5.4505 | opp_overlap 3042708 GTATGGAAAAGCAAA CGGCGCTTCA CATTA TGAAACGCCG TTTTTTATTAACAAC uxaA 3044246 - 3042759 - | altronate hydrolase TERM 3532 3042935 - 3042961 + g 77 -8.7 -4.11216 | TCCAGTGTTTTTTCT TCGCCGCCAGT TCACT GTTGGTGGCGA TTTTCACCGTCGGCA TERM 3533 3044480 - 3044459 - H 71 -7.9 -3.95787 | opp_overlap 3044460 3044472, overlap 3044472 CAGCATACCGACAAA GCGGCTCAG CAAA CCGAGCTGC GCCAGTTGGGTCATC TERM 3534 3045648 - 3045631 - H 85 -3.5 -5.47821 | gap 1, overlap 3045634 ACGTAGTTAAAAAAA TTACTCTC AAA GAG-GTAA ATCTCGCTGCTGGCC TERM 3535 3046669 - 3046680 + G 72 -7.2 -4.15044 | TCAGTTCTGGGGTAT CGCG CTGC CGCG TTTCTTGGCAGAACC TERM 3536 3046832 - 3046852 + G 72 -8.9 -3.83502 | overlap 3046836 CTCGGTAGTTACCTG CCGCCGCTG TTC CAGCGTTGG TTTGGTGTGAACCTG TERM 3537 3046836 - 3046848 + G 73 -9.1 -3.59402 | overlap 3046832 GTAGTTACCTGCCGC CGCTG TTC CAGCG TTGGTTTGGTGTGAA exuT 3045854 - 3047272 + | transport of hexuronates insB 3047674 - 3047297 - | IS1 ORF2 insA 3047994 - 3047719 - | IS1 ORF1 TERM 3538 3048098 - 3048081 - H 88 -12.7 -3.53224 | opp_overlap 3048081 TAGTTTCCCTTCAAA GCCGCCT TCTC AGGCGGC TTTTTCATCACTGCG TERM 3539 3048081 - 3048098 + H 100 -12.7 -4.7497 | opp_overlap 3048081 TAGTTTCCCTTCAAA GCCGCCT TCTC AGGCGGC TTTTTCATCACTGCG exuR 3048179 - 3048955 + | DNA-binding transcriptional repressor ExuR TERM 3540 3048969 - 3048988 + F 87 -10.7 -4.0942 | opp_overlap 3048960 3048958 GAAATACCTGTCCGA CAGGCGC TGCGAC GCGCCTG TTTGTCTCGTCGGTA TERM 3541 3049246 - 3049230 - f 70 -5.1 -4.44819 | opp_overlap 3049242, overlap 3049232 CAGAACATACCAAAA CAGCAAT AAC ATTGCGG TAGTGCATCTTTTAA yqjA 3049300 - 3049962 + | hypothetical protein yqjB 3049966 - 3050349 + | hypothetical protein TERM 3542 3050412 - 3050439 + F 79 -10.6 -3.48924 | opp_overlap 3050412 3050413 3050415, overlap 3050413 3050416 ACTGTCTATGATTAA TGAGGCGGTGGT TAAC ACTACCGCTTCG TTGTCTGGACAATCG TERM 3543 3050413 - 3050438 + F 76 -11.9 -2.6914 | opp_overlap 3050412 3050413 3050415, overlap 3050412 3050416 CTGTCTATGATTAAT GAGGCGGTGGT TAAC ACTACCGCTTC GTTGTCTGGACAATC TERM 3544 3050416 - 3050435 + F 75 -10 -3.49618 | opp_overlap 3050415 3050413 3050412, overlap 3050413 3050412 TCTATGATTAATGAG GCGGTGGT TAAC ACTACCGC TTCGTTGTCTGGACA yqjC 3050481 - 3050864 + | hypothetical protein TERM 3545 3050852 - 3050842 - f 74 -6.8 -4.20042 | AGGAAGAGCTGAAAA CGCT GGA AGCG CGCGACTACTAGCTC yqjD 3050902 - 3051207 + | hypothetical protein yqjE 3051210 - 3051614 + | hypothetical protein TERM 3546 3051654 - 3051676 + G 78 -9.2 -3.88291 | opp_overlap 3051664 GCAACTGCTTAGCCA GATCCAGC AACAACG GCTGGATC TTTCTGCCAGTCGTC SDY_3287 3051604 - 3051903 + | hypothetical protein TERM 3547 3051914 - 3051932 + T 85 -12.4 -3.37071 | GTTAACTTCCTTTCT GGCCGGAG CCA TTCCGGCC TTATACCTCAAATTT SDY_3288 3052933 - 3052028 - | insertion element IS2 transposase InsD SDY_3289 3053256 - 3052891 - | insertion sequence 2 OrfA protein TERM 3548 3053408 - 3053391 - g 100 -4.1 -5.626 | overlap 3053394 3053397 CATTGCACAAAAAAA CAATCAG CAGC CTGAGTG GCGCAGTGGAGAGTA TERM 3549 3053405 - 3053394 - g 79 -4.4 -4.89054 | overlap 3053391 3053397 TGCACAAAAAAACAA TCAG CAGC CTGA GTGGCGCAGTGGAGA TERM 3550 3053664 - 3053674 + G 82 -3.2 -5.27335 | overlap 3053662 CTGCGGGCTTTACGC TGCT GAC GGCA TTTTTATTTCACAGC yqjF 3053267 - 3053818 + | hypothetical protein TERM 3551 3053863 - 3053846 - f 100 -11.3 -5.37345 | opp_overlap 3053846 CTTAACGATAAAAAA CGAGGAG GAAG CTCCTCG TTTTTGCTATTGGAG TERM 3552 3053846 - 3053863 + F 100 -11.3 -4.87626 | opp_overlap 3053846 CTTAACGATAAAAAA CGAGGAG GAAG CTCCTCG TTTTTGCTATTGGAG TERM 3553 3054439 - 3054480 + G 70 -6.7 -4.07568 | gap 1, opp_overlap 3054453 3054463 3054476 TGACGAACTTAACGG CTGGATTTATG-ACACCGTT AAC AACGGCGTGTATAAAGCCGG TTTTGCCACCAGCCA TERM 3554 3054614 - 3054630 + G 78 -8.7 -4.27617 | overlap 3054615 GCCGATATTCGCCTG TGGACCA CGC TGGTCCG TTTTGATCCAGTGTA TERM 3555 3054615 - 3054629 + G 70 -10 -3.16088 | overlap 3054614 CCGATATTCGCCTGT GGACCA CGC TGGTCC GTTTTGATCCAGTGT yqjG 3053888 - 3054874 + | putative transferase TERM 3556 3054880 - 3054897 + F 74 -11.3 -2.8664 | opp_overlap 3054880 CTTCGGTTAAAAAAA GGCACCT TACG AGGTGCC TCTGATAATTAGCTA TERM 3557 3054897 - 3054880 - f 100 -11.3 -5.40072 | opp_overlap 3054880 CTTCGGTTAAAAAAA GGCACCT TACG AGGTGCC TCTGATAATTAGCTA yhaH 3055157 - 3055522 + | putative cytochrome TERM 3558 3055536 - 3055558 + T 93 -10.6 -4.50583 | AAAACAAATCTGCTC GCCGGATG TCTGACT CATCCGGC TTTTATCATCATGTT SDY_3293 3056107 - 3055712 - | iso-IS1 ORF2 insA 3056700 - 3056975 + | IS1 ORF1 insB 3057020 - 3057397 + | IS1 ORF2 TERM 3559 3057553 - 3057563 + T 86 -4.6 -5.52096 | overlap 3057541 ACCGTTCAGGTGCCT GGGC CTT GCTC TTTTTTGTTCCGTTT TERM 3560 3057682 - 3057699 + T 100 -12.7 -5.07486 | opp_overlap 3057681 3057680 ATTAATCTTAGAATT GGGGCGA TATT TCGCCCC TTTTTATTAACAATA yhaJ 3058627 - 3057722 - | putative transcriptional regulator LYSR-type yhaK 3058732 - 3059433 + | hypothetical protein yhaL 3059453 - 3059620 + | hypothetical protein yhaNM 3061064 - 3059754 - | hypothetical protein TERM 3561 3060470 - 3060459 - G 75 -7.2 -4.35604 | GGAATCGAGAATAAA GCGG ATCG CCGC AAACTGGACTTCATT yhaO 3062423 - 3061092 - | putative transport system permease protein insB 3062990 - 3062613 - | IS1 ORF2 insA 3063310 - 3063035 - | IS1 ORF1 TERM 3562 3063450 - 3063433 - R 100 -7.7 -6.00086 | AGATCACAAAAAAAA GGTGCAC ATTT GTACACC CAAGGATGAAAGCTG TERM 3563 3063479 - 3063462 - R 80 -9.9 -3.84961 | overlap 3063474 CACCCAAGGATGAAA GCTGACA GCAA TGTCAGC CGCAGACCACTTTAA yhaP 3064302 - 3063475 - | putative L-serine dehydratase TERM 3564 3064904 - 3064870 - R 75 -11.5 -3.05384 | gap 1, opp_overlap 3064894, overlap 3064884 TTGCCGTTCAGTGAA GTGGAGCGGAACGACC TTAC GACCGTCCCGCTC-AC GAGGCTTTACTCACT tdcE 3067609 - 3065315 - | formate acetyltransferase 3 TERM 3565 3065805 - 3065827 + g 70 -5.5 -4.33854 | GACTGGGTAGGGACG GCGTTGCGA TAGGT TGGCAGCGC TTTAATTTTCTTCAT TERM 3566 3067205 - 3067236 + g 81 -8.8 -4.35461 | gap 1 ATATTCAAATTCACT GTCCATTTCACGGCC ATA GGC-GTGGAATGAAC TTTTAATCATATTAA tdcD 3068863 - 3067643 - | propionate/acetate kinase TERM 3567 3068677 - 3068708 + g 73 -9.4 -3.57263 | gap 1, overlap 3068677 ATGCACCTTCGTAGC T-GTGGTGAGCCAGC GGT GCTGGCTCTCCCCCA TTTACGGATAAGAAT TERM 3568 3068677 - 3068707 + g 70 -11 -2.74144 | overlap 3068677 ATGCACCTTCGTAGC TGTGGTGAGCCAGC GGT GCTGGCTCTCCCCC ATTTACGGATAAGAA tdcC 3070208 - 3068877 - | threonine/serine transporter TdcC tdcB 3071219 - 3070230 - | threonine dehydratase TERM 3569 3070282 - 3070303 + g 79 -2.1 -5.28983 | GAAAGATCGATATTG CCGCCGGAA ATAA TACTGACGG TTTTTCTGTTTTGAA tdcA 3072256 - 3071318 - | DNA-binding transcriptional activator TdcA tdcR 3072445 - 3072789 + | DNA-binding transcriptional activator TdcR SDY_3312 3073431 - 3073631 + | iso-IS1 ORF2 SDY_3313 3073650 - 3073826 + | iso-IS1 ORF2 insB 3074592 - 3074215 - | IS1 ORF2 insA 3074912 - 3074637 - | IS1 ORF1 TERM 3570 3075076 - 3075053 - R 82 -6.8 -4.75372 | ATTATTTACTAAAAA TAACGCCTGT TTTA ACAAGCATTA GCGATATGTATTCTG SDY_3317 3075752 - 3075357 - | iso-IS1 ORF2 TERM 3571 3076479 - 3076444 - R 74 -6.9 -4.25104 | opp_overlap 3076453, overlap 3076445 3076452 3076453 CCCTGTGCACCAAAA GCAAAAAACCGCCAG TTTACG CTGGCGTTTTTTCGT TAAATCAGGTAAAAC TERM 3572 3076478 - 3076445 - R 74 -10.4 -3.14848 | opp_overlap 3076453, overlap 3076444 3076452 3076453 CCTGTGCACCAAAAG CAAAAAACCGCCAG TTTACG CTGGCGTTTTTTCG TTAAATCAGGTAAAA TERM 3573 3076471 - 3076452 - R 86 -4.9 -5.48054 | opp_overlap 3076453, overlap 3076445 3076444 3076453 ACCAAAAGCAAAAAA CCGCCAG TTTACG CTGGCGT TTTTTCGTTAAATCA TERM 3574 3076470 - 3076453 - R 74 -8.4 -3.86392 | opp_overlap 3076453, overlap 3076452 3076445 3076444 CCAAAAGCAAAAAAC CGCCAG TTTACG CTGGCG TTTTTTCGTTAAATC TERM 3575 3076453 - 3076470 + r 100 -9.1 -5.28481 | opp_overlap 3076452 3076445 3076444 3076453 CCAAAAGCAAAAAAC CGCCAGT TTAC GCTGGCG TTTTTTCGTTAAATC TERM 3576 3076591 - 3076564 - R 100 -15 -4.07568 | opp_overlap 3076571, overlap 3076571 TCTGCCCCTCCAAAA GCAAAAACCCGC CGAA GCGGGTTTTTAC GTAAATCAGGTGAAA TERM 3577 3076571 - 3076584 + r 93 -9.5 -4.67353 | opp_overlap 3076571 3076564 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTAAATCA TERM 3578 3076584 - 3076571 - R 100 -9.5 -5.0925 | opp_overlap 3076571, overlap 3076564 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTAAATCA yhaD 3078153 - 3077008 - | glycerate kinase I TERM 3579 3078176 - 3078187 + r 74 -7.2 -4.34263 | opp_overlap 3078176 CCTGTTACCACATGA CGCC GGAG GGCG TTTCTCTTATTCGGC garR 3079140 - 3078250 - | tartronate semialdehyde reductase TERM 3580 3078810 - 3078824 + g 77 -10 -3.57561 | overlap 3078804 CAATGCCTTTCGCTT TCAGCG CTT CGCTGA TTTCACGGCTTGCCA TERM 3581 3079067 - 3079081 + g 73 -4.2 -4.83593 | opp_overlap 3079067 ACCACCAGCGAGTAA CCTGCT TTC AGAAGG TTTTTACTCATTGTT yhaF 3079940 - 3079170 - | alpha-dehydro-beta-deoxy-D-glucarate aldolase TERM 3582 3080589 - 3080603 + H 76 -4.2 -4.9218 | TTGGGTCCGCTTGCT GCCG CACTGCC CGGC TTTTTGTGGTCCATA insA 3081323 - 3081598 + | IS1 ORF1 insB 3081643 - 3082020 + | IS1 ORF2 TERM 3583 3082477 - 3082456 - g 77 -3 -5.07275 | TCACACAGATAAAAA GCAGCA CCGTATATTC TGCTGC AACCCAAACGGGTGT yraK 3082053 - 3083144 + | putative fimbrial protein TERM 3584 3083179 - 3083147 - T 89 -11.5 -4.07885 | gap 1, overlap 3083150 CATCGTGCGGTAAAA GAAGACGTTGCGTT TTGATT AACGCAACG-CTTC GGCACTCTTACCCCT TERM 3585 3083176 - 3083150 - T 73 -7.4 -4.17048 | gap 1, overlap 3083147 CGTGCGGTAAAAGAA GACGTTGCGTT TTGATT AACGCAACG-C TTCGGCACTCTTACC yraL 3084047 - 3083187 - | hypothetical protein TERM 3586 3084107 - 3084096 - H 86 -3 -5.75945 | ATTGCGTAAAAAAAA TATC ACTG GATA CATTATGGTACCCTC TERM 3587 3084243 - 3084255 + GH 72 -4.7 -4.66537 | overlap 3084236 3084240 GCAGGGCACGGCGCA GGCTG ATT CTGCC TTTTATCTTCAGCAG TERM 3588 3084528 - 3084510 - gH 78 -5.3 -4.79352 | opp_overlap 3084520 3084522, overlap 3084490 3084488 3084486 3084485 CGATTTAGAACAAAA CCAGCAA GCGCG TTACTGG CAGGCAAAAATCGAT yraM 3084112 - 3086148 + | putative glycosylase yraN 3086106 - 3086501 + | hypothetical protein yraO 3086521 - 3087111 + | DnaA initiator-associating protein DiaA yraP 3087121 - 3087696 + | hypothetical protein TERM 3589 3087762 - 3087797 + T 100 -10.4 -4.7373 | opp_overlap 3087774, overlap 3087731 3087765 CAACGATGCAAACCG TAGGTCGGATAAGGCG TTTA CGCCGCATCCGACATA TTTTTCCTCAAATCA TERM 3590 3087765 - 3087794 + T 78 -12.1 -2.98472 | opp_overlap 3087774, overlap 3087731 3087762 CGATGCAAACCGTAG GTCGGATAAGGCG TTTA CGCCGCATCCGAC ATATTTTTCCTCAAA yraR 3089603 - 3088923 - | hypothetical protein yhbO 3089644 - 3090204 + | hypothetical protein yhbP 3090627 - 3090184 - | hypothetical protein TERM 3591 3090465 - 3090475 + g 74 -8.2 -3.87914 | overlap 3090466 GCGGCCCACTCATCT GCGC GTG GCGC GTTTTTTCTTCCGTC TERM 3592 3090466 - 3090476 + g 100 -8.2 -5.4833 | overlap 3090465 CGGCCCACTCATCTG CGCG TGG CGCG TTTTTTCTTCCGTCA TERM 3593 3090962 - 3090925 - g 84 -13.6 -2.53876 | gap 1 TGGTAGCGGAAGGCA CAGGGTTTGCAGAGCTG TTGAG CAGC-CTGCAAACCCCA AAGATTAAAAGCGAT yhbQ 3090678 - 3090980 + | GIY-YIG nuclease superfamily protein yhbS 3091470 - 3090967 - | hypothetical protein yhbT 3091988 - 3091464 - | hypothetical protein TERM 3594 3092605 - 3092623 + G 72 -10.2 -3.281 | overlap 3092603 CATTTTGACGTTGCC CGCGTGGT GCT GCCGCGCG TGTTGTCGATTCACC yhbU 3092197 - 3093192 + | putative collagenase TERM 3595 3094007 - 3093995 - g 70 -5.5 -4.4078 | CCGCGCTAATGAAAA TGGCG CTG CACCA CTGCCGTTGACGGCG yhbV 3093183 - 3094079 + | hypothetical protein yhbW 3094160 - 3095167 + | hypothetical protein mtr 3096528 - 3095284 - | tryptophan permease TERM 3596 3095634 - 3095618 - G 82 -7.9 -4.48902 | AGATAGTCAAACAAA CCCAGCG TTA CGCCGAG GAACGAACTCGCTAC TERM 3597 3096154 - 3096137 - G 70 -4 -4.69549 | opp_overlap 3096142 AATGCAAAACCAAAA CCCGCC GCCCGT GCCGGG ACGTTTAGTGACATC TERM 3598 3096425 - 3096409 - G 74 -2.9 -4.9218 | overlap 3096410 CATTGACCAGAAAAA CCACGCC CCG GACATGA CCACTGGCAGAGAAA TERM 3599 3096501 - 3096474 - G 76 -10.6 -3.28712 | gap 1, opp_overlap 3096473 3096493 TGGTGCCGCCGATAA TCACCA-CGCCGC CAA GCAGCGACGGTGA CGTTTGGGTGGTGGT TERM 3600 3096616 - 3096638 + r 74 -10.6 -3.17888 | opp_overlap 3096616, overlap 3096614 3096612 3096610 AAAGACAGAAAAAAA GCCCCGAT GGTTCAA ATCGGGGC TGTATATATTATTTT TERM 3601 3096638 - 3096616 - R 100 -10.6 -5.82281 | opp_overlap 3096616 3096614 3096612 3096610 AAAGACAGAAAAAAA GCCCCGAT GGTTCAA ATCGGGGC TGTATATATTATTTT deaD 3098571 - 3096682 - | ATP-dependent RNA helicase DeaD TERM 3602 3098716 - 3098691 - R 73 -7.5 -4.04023 | overlap 3098692 ATTAACGAACAACAA CGCCCTCACCC GTTA AGGTGATGGCA ATCAAAAAAGATTAC yhbM 3099635 - 3098751 - | lipoprotein NlpI TERM 3603 3099732 - 3099711 - R 100 -15.1 -4.07568 | CCTGCCCGGTTAAAA GCCCCCCGC CGCA GCGGAGGGC AAATGGCAACCTTAC pnp 3101948 - 3099744 - | polynucleotide phosphorylase/polyadenylase TERM 3604 3102087 - 3102105 + r 77 -7.3 -4.38712 | opp_overlap 3102088, overlap 3102088 CGTCAGCTTGAAAAA AGGGGCC ACTCA GGCCCCC TTTTCTGAAACTCGC TERM 3605 3102088 - 3102104 + r 74 -10.8 -3.22906 | opp_overlap 3102088, overlap 3102087 GTCAGCTTGAAAAAA GGGGCC ACTCA GGCCCC CTTTTCTGAAACTCG TERM 3606 3102104 - 3102088 - R 100 -10.8 -5.03314 | opp_overlap 3102088 3102087 GTCAGCTTGAAAAAA GGGGCC ACTCA GGCCCC CTTTTCTGAAACTCG rpsO 3102395 - 3102126 - | 30S ribosomal protein S15 TERM 3607 3102230 - 3102251 + g 85 -2.9 -5.34555 | opp_overlap 3102232, overlap 3102232 3102233 AAACCATGCGCAGCA GACCACGAC GGCT GTGGTGATC TTTTTTGTGCTCTGC truB 3103488 - 3102544 - | tRNA pseudouridine synthase B rbfA 3103889 - 3103488 - | ribosome-binding factor A TERM 3608 3103827 - 3103838 + g 75 -4.4 -4.82855 | overlap 3103819 TTCGCGTTGCAGGAT GAGA GCGA TCTC TTTTTGCATTTCCTG TERM 3609 3103911 - 3103927 + r 82 -7.9 -4.68506 | opp_overlap 3103912, overlap 3103912 TTCTCCTGACAAAAA AGGGGCT GTT AGCCCCC TTTTTAAAATTAATT TERM 3610 3103912 - 3103926 + r 79 -11.4 -3.40019 | opp_overlap 3103912, overlap 3103911 TCTCCTGACAAAAAA GGGGCT GTT AGCCCC CTTTTTAAAATTAAT TERM 3611 3103926 - 3103912 - R 100 -11.4 -5.24129 | opp_overlap 3103912 3103911 TCTCCTGACAAAAAA GGGGCT GTT AGCCCC CTTTTTAAAATTAAT infB 3106725 - 3104053 - | translation initiation factor IF-2 nusA 3108237 - 3106750 - | transcription elongation factor NusA TERM 3612 3106891 - 3106881 - G 74 -8.2 -3.89346 | opp_overlap 3106886, overlap 3106882 CTTCCAGCGTACAAA CGCC ACG GGCG GCCAGTTTGAATGTC TERM 3613 3106984 - 3107002 + g 82 -7.4 -4.57569 | TTCTTCCTGGGCCTG TGCAATGG TGG CCAGTGCA TTTTTAGCACGCTCG yhbC 3108717 - 3108265 - | hypothetical protein TERM 3614 3108754 - 3108742 - H 93 -6.9 -5.80248 | opp_overlap 3108741 CAAGACATAAAAAAA GGGCC TAA AGCCC AGTTATTCTGTAGTC TERM 3615 3108782 - 3108799 + H 71 -6.9 -4.0641 | opp_overlap 3108783, overlap 3108783 GTCAGATAACAAAAA ACCCCGA TAAA TCGGGGC TTTATATAACTGAAC TERM 3616 3108783 - 3108798 + H 73 -10.4 -3.03525 | opp_overlap 3108783, overlap 3108782 TCAGATAACAAAAAA CCCCGA TAAA TCGGGG CTTTATATAACTGAA TERM 3617 3108798 - 3108783 - H 100 -10.4 -5.60689 | opp_overlap 3108783 3108782 TCAGATAACAAAAAA CCCCGA TAAA TCGGGG CTTTATATAACTGAA argG 3109348 - 3110691 + | argininosuccinate synthase yhbX 3112306 - 3110699 - | putative alkaline phosphatase I SDY_3353 3112565 - 3112377 - | iso-IS1 ORF2 SDY_3354 3112773 - 3112540 - | iso-IS1 ORF2 TERM 3618 3113470 - 3113439 - R 91 -11 -4.30844 | opp_overlap 3113445 3113447, overlap 3113440 3113447 ATTCCAGGACCAAAA CGAAAAAAGACGCT TTTC AGCGTCTCTTTTCT GGAATTTGGTACCGA TERM 3619 3113469 - 3113440 - R 90 -14.5 -3.18024 | opp_overlap 3113445 3113447, overlap 3113439 3113447 TTCCAGGACCAAAAC GAAAAAAGACGCT TTTC AGCGTCTCTTTTC TGGAATTTGGTACCG TERM 3620 3113445 - 3113464 + r 75 -6.4 -4.44974 | opp_overlap 3113440 3113439 3113447, overlap 3113447 GGACCAAAACGAAAA AAGACGCT TTTC AGCGTCTC TTTTCTGGAATTTGG TERM 3621 3113462 - 3113447 - R 100 -9 -5.48054 | opp_overlap 3113445 3113447, overlap 3113440 3113439 ACCAAAACGAAAAAA GACGCT TTTC AGCGTC TCTTTTCTGGAATTT TERM 3622 3113447 - 3113462 + r 76 -9 -3.82551 | opp_overlap 3113447 3113440 3113439, overlap 3113445 ACCAAAACGAAAAAA GACGCT TTTC AGCGTC TCTTTTCTGGAATTT TERM 3623 3113602 - 3113624 + r 76 -7.7 -4.32607 | overlap 3113620 GATATCGCTGGTCGG CTTAGCCGG AGCAG CTGGCTGAG TTTGTTCGGTTTTCG secG 3113910 - 3113578 - | preprotein translocase subunit SecG TERM 3624 3113741 - 3113728 - G 70 -6.7 -4.00445 | GATGATGAAGAATAA CGTTG CCAG CAACG CCGTCATGCGGGTCA TERM 3625 3114111 - 3114099 - R 100 -9.1 -5.24129 | opp_overlap 3114098 3114099, overlap 3114101 TTCGCCGAGAAAAAA GGCGA CAA TCGCC GCCTTTTTAGCCAGT TERM 3626 3114099 - 3114114 + r 74 -6 -4.60255 | opp_overlap 3114099 3114101, overlap 3114098 TTCGCCGAGAAAAAA GGCGAC AATC GCCGCC TTTTTAGCCAGTTAT glmM 3115475 - 3114138 - | phosphoglucosamine mutase folP 3116316 - 3115468 - | dihydropteroate synthase TERM 3627 3115922 - 3115911 - G 70 -7.2 -4.0942 | opp_overlap 3115911 TATGCATCAGACAAA CCGG TAAA CCGG TTTCTGCAGCCGCCT TERM 3628 3116351 - 3116370 + r 87 -10.6 -4.18494 | opp_overlap 3116351 ATTGATAAGAAAAAA CCCCGGAG CACG CCCCGGGG TTTTCGGTACAAATA TERM 3629 3116370 - 3116351 - R 100 -12.8 -5.56673 | opp_overlap 3116351 ATTGATAAGAAAAAA CCCCGGAG CACG CCCCGGGG TTTTCGGTACAAATA hflB 3118340 - 3116406 - | ATP-dependent metalloprotease rrmJ 3119069 - 3118440 - | 23S rRNA methyltransferase J TERM 3630 3119236 - 3119219 - g 90 -4.9 -5.34309 | gap 1, overlap 3119224 AGTACTAAACAAAAA CAGCACCT GAA AGGT-CTG GCACATCCGCTCAAG yhbY 3119195 - 3119488 + | RNA-binding protein YhbY TERM 3631 3119576 - 3119602 + T 86 -13.8 -3.25946 | opp_overlap 3119582, overlap 3119582 CGCTCTGTTCGTTGA TAAAAAGGCCGC ATA GCGGCCTTTTTC CTTTCTTTACAATAC TERM 3632 3119582 - 3119596 + T 100 -12.8 -5.13137 | opp_overlap 3119582, overlap 3119576 GTTCGTTGATAAAAA GGCCGC ATA GCGGCC TTTTTCCTTTCTTTA TERM 3633 3119596 - 3119582 - T 100 -12.8 -4.82901 | opp_overlap 3119582 3119576 GTTCGTTGATAAAAA GGCCGC ATA GCGGCC TTTTTCCTTTCTTTA greA 3120121 - 3119645 - | transcription elongation factor GreA TERM 3634 3119683 - 3119694 + g 72 -7.2 -4.25104 | CTTCAAATTCTACTT CGCC GCCC GGCG TTTTGATGACCACAA TERM 3635 3119947 - 3119987 + g 74 -3.2 -4.88918 | gap 1, overlap 3119948 3119964 CTTTAATACGGCCTT CGCAGAA-ACCCTGCTGTT CACG AGCTGCGTGGTATTCGGCG TTTTCTTTCAGGTCG TERM 3636 3120236 - 3120223 - H 83 -2.4 -5.68023 | CCAGAAGCAAAAAAA TACC GCCCCG GGTA CAAGTCCAGGTCAGC dacB 3120368 - 3121801 + | D-alanyl-D-alanine carboxypeptidase/endopeptidase TERM 3637 3121831 - 3121813 - T 100 -13.1 -4.89063 | opp_overlap 3121813 TTAGTCAAAAAGAAA CCCCGGC ACATG GCCGGGG TTTTGCTGATTAACG TERM 3638 3121813 - 3121831 + T 95 -13.1 -4.3534 | opp_overlap 3121813 TTAGTCAAAAAGAAA CCCCGGC ACATG GCCGGGG TTTTGCTGATTAACG obgE 3123013 - 3121841 - | GTPase ObgE TERM 3639 3122191 - 3122207 + g 72 -7.9 -3.91506 | opp_overlap 3122182 3122181, overlap 3122189 3122193 ACCAACGCGGTTTCG CCGCCAG ATC CTGGCTG TATTTTTCCAGCTCG TERM 3640 3122193 - 3122205 + g 71 -9.1 -3.54256 | opp_overlap 3122182 3122181, overlap 3122191 3122189 CAACGCGGTTTCGCC GCCAG ATC CTGGC TGTATTTTTCCAGCT yhbE 3123994 - 3123029 - | hypothetical protein TERM 3641 3123261 - 3123224 - G 76 -9.1 -3.74198 | gap 1, overlap 3123217 AAAAAATAGCGTAAA CAGTG-GGGTGAGCGTGA TGA TCGCGCTCACCTGCGCTG CCTGCCAGCGAGCCA TERM 3642 3123620 - 3123572 - G 74 -3.3 -5.00884 | gap 3, overlap 3123558 3123547 3123575 ACTGGTGTTAAAAAA CATCAC-CAGGCCGCTCAGGAGCA TCAA TGCCCCT-A-CAACCTGAGTGCTG CGCATTTTCTCTTTC TERM 3643 3124092 - 3124071 - R 100 -15.9 -4.75174 | opp_overlap 3124071 TATCGAATGTAAAAA GCCCCGCAA CGTG TTGCGGGGC TTTCATCCGTCACCG TERM 3644 3124071 - 3124092 + r 100 -15.9 -3.76224 | opp_overlap 3124071 TATCGAATGTAAAAA GCCCCGCAA CGTG TTGCGGGGC TTTCATCCGTCACCG rpmA 3124378 - 3124121 - | 50S ribosomal protein L27 rplU 3124710 - 3124399 - | 50S ribosomal protein L21 TERM 3645 3125507 - 3125479 - g 70 -5.1 -4.3586 | opp_overlap 3125497 TTATCTATAGCAAAA CCGCGCGTCTG TTTGAGG CTGCCGCGCAG TGTTCCGGAATTCTG TERM 3646 3125655 - 3125645 - g 81 -6.8 -4.67755 | ACAGTTAGGTAAAAA CGTC GGC GACG ATCTGAACGAAGGTA ispB 3124968 - 3125939 + | octaprenyl diphosphate synthase TERM 3647 3125953 - 3125971 + F 90 -16 -2.73483 | AATCCCCTCCCCTCA TCCCGCGC AGT GCGCGGGA TGATTCCAGTAAACT nlp 3126167 - 3126445 + | DNA-binding transcriptional regulator Nlp murA 3127752 - 3126493 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 3648 3127250 - 3127272 + g 86 -10.6 -3.92075 | opp_overlap 3127248 GCAGAACACATGATG GTCACCGTTG CGC CAACGCTGAC TTTATCCATCACGAT yrbA 3128076 - 3127807 - | hypothetical protein TERM 3649 3127903 - 3127926 + g 86 -3.8 -5.40474 | CGCAATATATTCCAT CAGCGGGC CATAAACC GTCTGCTG TTTTTTTACCCGACT TERM 3650 3128161 - 3128137 - R 85 -7.2 -5.05712 | gap 1, overlap 3128156 ATAAATAAGCAAAAA GCCTCG-CTGA TAAA TCAGACAAGGC TCGACTTGCAGGCAG yrbB 3128610 - 3128221 - | hypothetical protein yrbC 3129149 - 3128514 - | hypothetical protein TERM 3651 3128672 - 3128685 + gr 70 -4.5 -4.57569 | overlap 3128673 CGTAAGCCTGCCAGT TTCCC GTCT GGGAG TTTTTACGCCACTGG yrbD 3129719 - 3129168 - | hypothetical protein yrbE 3130506 - 3129724 - | hypothetical protein yrbF 3131323 - 3130514 - | putative ABC transporter ATP-binding protein YrbF TERM 3652 3132025 - 3132048 + G 90 -7.4 -4.87665 | gap 1 CTTGCAGAGCTGCCG CGTGAC-GGCG GAT TGCCCGTCGCG TTTTTATGGCTCGGC TERM 3653 3132247 - 3132234 - g 72 -6.7 -4.24002 | TCGCAAAGGTGAAAA CGACA TTGC TGTCG GAAATATCATTGGCG TERM 3654 3132362 - 3132373 + G 70 -4.4 -4.47888 | ACTACAGCGTGATGT TGCT GGTG AGCA TTATTTTTGCGTTGC yrbG 3131536 - 3132501 + | putative calcium/sodium:proton antiporter TERM 3655 3133431 - 3133449 + G 84 -11 -3.79138 | ATATCACCTCCGTGA TGGTTGCC GAT GGCGACCA TTTACTCGGTGTGTT yrbH 3132515 - 3133501 + | D-arabinose 5-phosphate isomerase TERM 3656 3133848 - 3133828 - g 82 -7.5 -4.46112 | opp_overlap 3133832, overlap 3133830 GGGCAGTCAAACAAA CTGATCGCC TTT AGCGATCTG CTGGAAAAATTGGCG yrbI 3133522 - 3134088 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase TERM 3657 3134177 - 3134166 - gf 70 -3.6 -4.59511 | AATATGGCCGAAAAA GACG ATAC CGCC CAGGTGGTCGTCAAC yrbK 3134085 - 3134660 + | hypothetical protein TERM 3658 3135168 - 3135154 - gf 71 -3.4 -4.80417 | overlap 3135155 GACAAAAACAACAAA GGCCAG ACC CCGGCA CAGAAGAAGGGTAAT yhbN 3134629 - 3135186 + | hypothetical protein yhbG 3135193 - 3135918 + | putative ABC transporter ATP-binding protein YhbG TERM 3659 3136601 - 3136591 - g 75 -6.8 -4.42788 | CCCAATTCGATAAAA CCAC GCC GTGG CTGGAAGAGGCCAGA rpoN 3135966 - 3137399 + | RNA polymerase factor sigma-54 yhbH 3137422 - 3137709 + | putative sigma(54) modulation protein TERM 3660 3137737 - 3137763 + F 95 -13 -3.93236 | overlap 3137738 TTAGCATGTGCATGG CGGCCTGTTGTG CGG CACAACGGGCCA TTTGTACGGTTAATG TERM 3661 3137738 - 3137762 + F 100 -16.5 -2.95459 | overlap 3137737 TAGCATGTGCATGGC GGCCTGTTGTG CGG CACAACGGGCC ATTTGTACGGTTAAT TERM 3662 3137962 - 3137974 + G 81 -6.9 -4.61231 | overlap 3137958 AAACAACTTAGCCTG CCGCC TCA GGTGG TTTTTGAAGCTATCC ptsN 3137827 - 3138318 + | sugar-specific enzyme IIA component of PTS TERM 3663 3138372 - 3138358 - f 74 -8.6 -3.96148 | CGTTGTGAGGAGAAA CAGTAC ATG GTACTG ATGATCGTCAGCGGA TERM 3664 3138700 - 3138690 - g 74 -2.4 -5.06414 | opp_overlap 3138676 GCTTTCCAACAAAAA CCTG TCG CTGG AAAGTGCTATCGACA yhbJ 3138364 - 3139218 + | hypothetical protein TERM 3665 3139272 - 3139247 - g 88 -11.1 -4.13654 | overlap 3139250 TGTTGAAATCACAAA CAAGCTGGGCA TGCA TGCCCGGCCTG CAATGAAGCTGTTTG TERM 3666 3139269 - 3139250 - g 82 -9.2 -4.1851 | overlap 3139247 TGAAATCACAAACAA GCTGGGCA TGCA TGCCCGGC CTGCAATGAAGCTGT ptsO 3139215 - 3139487 + | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) TERM 3667 3139475 - 3139496 + F 72 -10.3 -2.75963 | overlap 3139474 CTTTAATTCTGGTTT TGATGAAGA TTAA TCTTCATCA CTTTGACATACAACT yrbL 3139701 - 3140333 + | hypothetical protein mtgA 3141058 - 3140330 - | monofunctional biosynthetic peptidoglycan transglycosylase yhbL 3141717 - 3141055 - | isoprenoid biosynthesis protein TERM 3668 3141918 - 3141940 + r 82 -5.4 -5.19261 | overlap 3141919 3141921 TGGCGCAGTATTCGC GCACCCCGGT CTA GCCGGGGTCA TTTTTTAGTGGCTTT TERM 3669 3141919 - 3141939 + r 76 -8.9 -3.6993 | overlap 3141918 3141921 GGCGCAGTATTCGCG CACCCCGGT CTA GCCGGGGTC ATTTTTTAGTGGCTT TERM 3670 3141921 - 3141937 + r 79 -11.5 -3.41701 | overlap 3141919 3141918 CGCAGTATTCGCGCA CCCCGGT CTA GCCGGGG TCATTTTTTAGTGGC arcB 3144274 - 3141938 - | aerobic respiration control sensor protein ArcB TERM 3671 3142335 - 3142351 + g 70 -6.5 -4.2704 | GTACTCTCCTCATCA TCCTGGG TAT CCCAGAA TTTCTTGATCATCGC TERM 3672 3143671 - 3143695 + g 74 -2.8 -4.92239 | CCGGTGAGTAAACAT CAGCAGGTTT CAGAT GAACCAGTTG TTTTTCGCTTTTTCC yhcC 3145299 - 3144370 - | hypothetical protein TERM 3673 3144743 - 3144716 - G 73 -11.3 -2.60615 | overlap 3144715 3144713 AGCGTTTGCAAACAT TCAGCCTGCCC TTCGCC AGGCAGGCCGA CAATTAAGTGGGAAC TERM 3674 3145777 - 3145795 + H 76 -11.8 -2.71918 | overlap 3145776 3145775 3145779 GCTGGAAGCTTTCTG GATGAGCA GCC TGCTCATC ATATTTATGCAGTAA TERM 3675 3146545 - 3146563 + G 70 -4.5 -4.56961 | gap 1, overlap 3146549 TAAAGGTCTGTGTAT GC-CGGCG GATC TGCCGCGC TTTTATCTGGATCTT TERM 3676 3147150 - 3147137 - g 72 -5.2 -4.58283 | GAAGTGGTCGAAAAA GGCC GCGTCG GGCC AGGCGAACTGATGGT TERM 3677 3149611 - 3149584 - g 70 -6.2 -4.1899 | opp_overlap 3149606, overlap 3149587 CTACTGTACCGAAAA CAACCCGCCGTT TGAT AACGGCCTGCTG AACGCGCAGTTGCTG gltB 3145973 - 3150433 + | glutamate synthase subunit alpha TERM 3678 3150906 - 3150890 - g 74 -2.1 -5.04385 | opp_overlap 3150900, overlap 3150892 CAGACCGGTAAAAAA GTGGCGA TTA TCGGCGC AGGCCCGGCGGGTCT TERM 3679 3150976 - 3150959 - g 70 -6.9 -4.11484 | overlap 3150960 CGTAACGGCGTAAAA GCGGTCG TCTT CGACCGT CACCCGGAAATTGGT TERM 3680 3151220 - 3151198 - g 74 -7.6 -4.07568 | overlap 3151204 CGGCGGGCTGGAAAA CGAAGACGCC GAT GGCGTGTACG CAGCGCTGCCGTTCC gltD 3150446 - 3151864 + | glutamate synthase subunit beta TERM 3681 3152374 - 3152352 - g 100 -16.4 -3.6106 | overlap 3152363 TTCAACATGTTGAAA TTCGCCAGAC AGT GTCTGGCGAA TTAACACCATTGGGA TERM 3682 3152425 - 3152379 - g 100 -16 -3.33696 | overlap 3152363 3152381 TGTCTGGCGAATTAA CACCATTGGGAATTCCGCAGAC ACC ATCTGCAGAATTCCCATCGGCA AAGATTTGGCAGACG TERM 3683 3152423 - 3152381 - g 100 -18.6 -3.23853 | overlap 3152363 3152379 TCTGGCGAATTAACA CCATTGGGAATTCCGCAGAC ACC ATCTGCAGAATTCCCATCGG CAAAGATTTGGCAGA TERM 3684 3152428 - 3152454 + G 100 -18.2 -3.57462 | opp_overlap 3152428 ATTCCCATCGGCAAA GATTTGGCAGAC GCT GTCTGCCAAATC TTTCCCCCTGCCCTG TERM 3685 3152454 - 3152428 - g 100 -18.2 -3.57263 | opp_overlap 3152428 ATTCCCATCGGCAAA GATTTGGCAGAC GCT GTCTGCCAAATC TTTCCCCCTGCCCTG yhcG 3152048 - 3153175 + | hypothetical protein TERM 3686 3153190 - 3153216 + T 88 -12.4 -3.53444 | overlap 3153192 ATTTCAGCGGTTTCG AATTCTGCAGAC ACT GTCTGCAGAATC TTTAAAACGAACTAA TERM 3687 3153192 - 3153214 + T 100 -15 -3.34517 | overlap 3153190 TTCAGCGGTTTCGAA TTCTGCAGAC ACT GTCTGCAGAA TCTTTAAAACGAACT yhcH 3153699 - 3153235 - | hypothetical protein yhcI 3154571 - 3153696 - | N-acetylmannosamine kinase yhcJ 3155257 - 3154568 - | N-acetylmannosamine-6-phosphate 2-epimerase TERM 3688 3155297 - 3155278 - R 72 -10.7 -2.78679 | overlap 3155277 TTCCCTTAGCGAAAG GCCCGGT ACAGAG ACCGGGC AACAGGATTAACTTT nanT 3156795 - 3155305 - | putative sialic acid transporter TERM 3689 3156808 - 3156829 + r 95 -12.3 -3.8377 | gap 1 CATTGTGAGTCTCCC GCG-GTGGGC GAT GCCCACACGC TTTGGTATGAAAATT TERM 3690 3156906 - 3156857 - R 74 -10.9 -2.89683 | gap 1, opp_overlap 3156887 3156889 ATTGTAGGGTACAGA TGCGTTTATTTCCCCTCACCCG GTAGGGG CGAGCGAGGGGAAAC-AACTCA CCCGCGCTCTTGCAT nanA 3157797 - 3156904 - | N-acetylneuraminate lyase yhcK 3158782 - 3157991 - | transcriptional regulator NanR SDY_3402 3159465 - 3159109 - | iso-IS1 ORF2 TERM 3691 3160161 - 3160171 + r 76 -8.2 -4.15565 | opp_overlap 3160161 ACGTCAGGAATTACA GGCG TTT CGCC TTTTGCGGTGGTGAA TERM 3692 3160298 - 3160268 - R 100 -18.5 -4.77157 | opp_overlap 3160268 3160275, overlap 3160275 TTAAGTCATTAAAAA GACAAAACAGGCC GCCTG GGCCTGTTTTGTC TTACTTCACAACGCG TERM 3693 3160268 - 3160298 + r 100 -18.5 -3.33696 | opp_overlap 3160268 3160275, overlap 3160275 TTAAGTCATTAAAAA GACAAAACAGGCC GCCTG GGCCTGTTTTGTC TTACTTCACAACGCG TERM 3694 3160275 - 3160291 + r 93 -9.4 -4.73864 | opp_overlap 3160268 3160275, overlap 3160268 ATTAAAAAGACAAAA CAGGCC GCCTG GGCCTG TTTTGTCTTACTTCA TERM 3695 3160291 - 3160275 - R 100 -9.4 -5.00027 | opp_overlap 3160275 3160268, overlap 3160268 ATTAAAAAGACAAAA CAGGCC GCCTG GGCCTG TTTTGTCTTACTTCA sspB 3160796 - 3160299 - | ClpXP protease specificity-enhancing factor sspA 3161440 - 3160802 - | stringent starvation protein A TERM 3696 3161782 - 3161795 + r 100 -9.5 -5.03145 | opp_overlap 3161782 TTTAGCCATAAAAAA CCCGC CAAA GCGGG TTTTTTCGCAAATTG TERM 3697 3161795 - 3161782 - R 100 -9.5 -5.28176 | opp_overlap 3161782 TTTAGCCATAAAAAA CCCGC CAAA GCGGG TTTTTTCGCAAATTG rpsI 3162226 - 3161834 - | 30S ribosomal protein S9 rplM 3162670 - 3162242 - | 50S ribosomal protein L13 TERM 3698 3162532 - 3162547 + g 70 -6.8 -4.05446 | CACCGGTATCTACGT GCGGAG TGTA TTCCGC TTTGTGCTTACCGCG TERM 3699 3162848 - 3162866 + r 100 -8.8 -5.06735 | opp_overlap 3162846 GATTATAGAGAAGTC GGGGTCAA AGA TCGACCCC TTTTTGTGATTTGTG yhcM 3164016 - 3162889 - | hypothetical protein TERM 3700 3163853 - 3163891 + g 76 -12.4 -2.5007 | overlap 3163852 3163855 CACAGCTTACCGACC CGCGCCATTAGCCCAC TCGTCCT GGGGGCTGGTGGCGTG CTATTGATGAGTTCC TERM 3701 3163855 - 3163889 + g 73 -11.4 -2.78266 | overlap 3163853 3163852 CAGCTTACCGACCCG CGCCATTAGCCCAC TCGTCCT GGGGGCTGGTGGCG TGCTATTGATGAGTT TERM 3702 3164471 - 3164448 - g 88 -11 -4.13282 | opp_overlap 3164448 AGCACATGGCGAAAA GCTCCAGCAG CCTG CTGCCGGAAC TGTCTGCTGAAGCAA yhcB 3164204 - 3164608 + | cytochrome d ubiquinol oxidase subunit III TERM 3703 3164619 - 3164637 + F 79 -12.4 -2.83517 | ACTAATTTATTTTTC GGGCGCAG CCA TTGCGCCC TCCTCTTCTCTCCCT degQ 3164762 - 3166129 + | serine endoprotease TERM 3704 3166139 - 3166168 + F 73 -10.7 -3.11192 | opp_overlap 3166139 CGTTAATGTCGTAAA CCGGGCATCAGGC TGAC GTGTGATGTCCGG TTAACTCGTGGTATG TERM 3705 3166986 - 3166959 - g 78 -10.6 -3.42124 | gap 1, opp_overlap 3166973, overlap 3166953 CAAAATTATGGATAA GCTGATC-CGCGA TGG TCGCGTGATCCGC GGCTACATTGGTATC degS 3166219 - 3167286 + | serine endoprotease TERM 3706 3167333 - 3167302 - T 95 -12.5 -4.09685 | opp_overlap 3167309, overlap 3167309 GTCGAGTGCTCAAAA CAAAAAACCGGAG TCTGTG CTCCGGTTTTTTA TTATCCGCTAATCAA TERM 3707 3167326 - 3167309 - T 100 -8.4 -5.79595 | opp_overlap 3167309, overlap 3167302 GCTCAAAACAAAAAA CCGGAG TCTGTG CTCCGG TTTTTTATTATCCGC TERM 3708 3167309 - 3167326 + T 100 -9.1 -5.55769 | opp_overlap 3167309 3167302 GCTCAAAACAAAAAA CCGGAGT CTGT GCTCCGG TTTTTTATTATCCGC TERM 3709 3167368 - 3167380 + T 70 -9.1 -3.41738 | overlap 3167367 TTATTAACAAACTCT TCGCC CAG GGCGA TATCTTTCTTCAGCG mdh 3168287 - 3167349 - | malate dehydrogenase argR 3168722 - 3169192 + | arginine repressor TERM 3710 3169195 - 3169225 + F 73 -9.6 -3.30039 | overlap 3169194 CCAGGAGCTTTAATC TCTGCCCCGTCGCT TCT GGCGGCGGGGAAAA TGTTGCTTATCCCTC TERM 3711 3169343 - 3169333 - f 82 -3.2 -5.45726 | CATACGGTAAAAAAA GCAC ATT ATGC AAAATTCATTATCTA TERM 3712 3169372 - 3169403 + F 89 -4 -5.64873 | TAATTGAAAATACTA GAATTAAAAATA AACAACCG TGTTTTTAATTC TTTTTTGTTATTAAA yhcN 3169557 - 3169820 + | hypothetical protein TERM 3713 3169848 - 3169864 + T 100 -15.1 -5.78622 | opp_overlap 3169846 TTGTCCGACGATATT GCCCCCG GTT CGGGGGC TTTTTTTTGCACTAA yhcO 3170148 - 3169876 - | hypothetical protein TERM 3714 3170232 - 3170214 - R 100 -11.7 -5.17353 | opp_overlap 3170214 ATAGCCATGAAAAAA CCGACGC TTTTG GCGTCGG TTTTGACTTAACTAT TERM 3715 3170214 - 3170232 + r 95 -12.4 -4.29176 | opp_overlap 3170214 ATAGCCATGAAAAAA CCGACGCT TTT GGCGTCGG TTTTGACTTAACTAT yhcP 3172207 - 3170240 - | p-hydroxybenzoic acid efflux subunit AaeB yhcQ 3173145 - 3172213 - | p-hydroxybenzoic acid efflux subunit AaeA TERM 3716 3172918 - 3172932 + g 76 -4.2 -5.0133 | CGGCTGGTCGATGGT GAACAG TAC CTGTCC TTTTTTCACCAGCTG yhcR 3173356 - 3173153 - | hypothetical protein qseA 3173539 - 3174468 + | putative DNA-binding transcriptional regulator tldD 3176041 - 3174596 - | protease TldD TERM 3717 3175451 - 3175422 - G 74 -6.3 -4.50661 | gap 1, opp_overlap 3175438 AACTCATAACCAAAA CGACCGCCGCCGCC ACT GGC-ACCGCGTTCG CGTTTGCCATCTTCT TERM 3718 3175525 - 3175489 - G 81 -10.8 -3.65827 | gap 1 GAACGCTCACGGAAA GACGCACCAGCGGACGG ACAT CCG-CCGCTAGCGTGCC GTCGGTGGCCGCAAC TERM 3719 3175591 - 3175613 + g 72 -9.8 -3.28712 | TCACTTCCTGTACGC GCTTGTCCGC TTC GCGGGCAACC TTATCGACGCGACGC yhdRP 3179997 - 3176197 - | hypothetical protein TERM 3720 3176815 - 3176826 + g 74 -5.8 -4.54727 | opp_overlap 3176796 GGCGGCATCAATTTT CTGC CCGC GCAG TTTTCCTTTCAGCGA TERM 3721 3177154 - 3177166 + g 71 -9.1 -3.51411 | overlap 3177150 CGCGTTATTACGCAT CGCCA GCG TGGCG TTGATTTCACGCCCT TERM 3722 3178985 - 3179001 + g 82 -8 -4.52143 | TTACTGGCGCGAATC CGCAGT TCGTC ACTGCG TTTATTGTCTTTGCC cafA 3181534 - 3180065 - | ribonuclease G TERM 3723 3180693 - 3180708 + g 82 -9 -4.20136 | AGTTCTACTTTGCGT TCCAGC GCTC GCTGGA TTTCGTTTTCGACAT yhdE 3182117 - 3181524 - | Maf-like protein mreD 3182614 - 3182126 - | rod shape-determining protein MreD mreC 3183717 - 3182614 - | cell wall structural complex MreBCD transmembrane component MreC TERM 3724 3183394 - 3183423 + g 76 -7.7 -4.27117 | opp_overlap 3183396, overlap 3183402 ACGCAGCGGGGAACC CAGCAGCTCGCGC AGAC GCGCGTTCTCCTG TTTGTATTGTCCAAG TERM 3725 3183402 - 3183415 + g 73 -9.5 -3.59627 | opp_overlap 3183396, overlap 3183394 GGGAACCCAGCAGCT CGCGC AGAC GCGCG TTCTCCTGTTTGTAT mreB 3184886 - 3183783 - | penicillin binding protein 3 TERM 3726 3184578 - 3184595 + g 74 -8.3 -3.90291 | opp_overlap 3184578, overlap 3184580 TTCAGTCACGAAGAA GTCGGCG ATAA CGCCGTC TTTCATTGGGCGAAT TERM 3727 3184595 - 3184578 - G 72 -8.3 -3.73647 | opp_overlap 3184578 3184580 TTCAGTCACGAAGAA GTCGGCG ATAA CGCCGTC TTTCATTGGGCGAAT TERM 3728 3184580 - 3184593 + g 71 -9.5 -3.54146 | opp_overlap 3184578, overlap 3184578 CAGTCACGAAGAAGT CGGCG ATAA CGCCG TCTTTCATTGGGCGA yhdA 3187071 - 3185131 - | regulatory protein CsrD TERM 3729 3185849 - 3185832 - G 72 -8.3 -3.85698 | overlap 3185814 CGGGTTTTTGATAAA GGCGCGG GCCG CCGCGAC TGAGCATTTGCTCGA TERM 3730 3187932 - 3187984 + G 70 -5.7 -4.33819 | gap 3, overlap 3187925 ATTACGGCGGCTGCG TGGCG-GCCTGTGGTCTGGC-GGGTG GTTT TACTCTGCCA-ACCACGGTCATGCCA TTTATTCTGCGTAAT yhdH 3187223 - 3188197 + | putative dehydrogenase SDY_3430 3188356 - 3188255 - | hypothetical protein SDY_3429 3188339 - 3189064 + | hypothetical protein TERM 3731 3189130 - 3189152 + FH 100 -10.6 -5.55769 | opp_overlap 3189130 TGCAAACTCACCGAA GCCGATTTTG CTA CCAAATCGGC TTTTTTATTGTCAGG TERM 3732 3189152 - 3189130 - fH 73 -10.6 -3.11732 | opp_overlap 3189130 TGCAAACTCACCGAA GCCGATTTTG CTA CCAAATCGGC TTTTTTATTGTCAGG SDY_3431 3189238 - 3189357 + | hypothetical protein accB 3189930 - 3190400 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 3733 3191362 - 3191344 - g 74 -8 -4.00756 | GACCTGATCAAAGAA CAGCTGCG TAT CGCTGCCG GTCAACCGCTGTCGA accC 3190411 - 3191760 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 3734 3191780 - 3191796 + F 100 -13.7 -5.5112 | opp_overlap 3191780 GCAAAAGCGTCAAAA GGCCGGA TTT TCCGGCC TTTTTTATTACTGGG TERM 3735 3191796 - 3191780 - f 100 -13.7 -4.19276 | opp_overlap 3191780 GCAAAAGCGTCAAAA GGCCGGA TTT TCCGGCC TTTTTTATTACTGGG yhdT 3191869 - 3192111 + | hypothetical protein TERM 3736 3192145 - 3192193 + G 76 -11.2 -3.41134 | gap 2, opp_overlap 3192180, overlap 3192119 CGCCTATCTGGTGGT GGTGTTCGGTATCTCTGTTTATGC GAT GCGTAAACGGAGC-ACCG-GCACC TTCCTTAATGAGTAT panF 3192101 - 3193552 + | sodium/panthothenate symporter TERM 3737 3193627 - 3193655 + G 77 -8.9 -4.11216 | opp_overlap 3193592 3193636, overlap 3193628 GATCTTAGCGATGCG CTGATGGAAGCGG GTG CCGTTTCTATCAC TTTTCAGGATACCCA TERM 3738 3193628 - 3193654 + G 79 -12.4 -3.06515 | opp_overlap 3193592 3193636, overlap 3193627 ATCTTAGCGATGCGC TGATGGAAGCGG GTG CCGTTTCTATCA CTTTTCAGGATACCC prmA 3193564 - 3194445 + | ribosomal protein L11 methyltransferase TERM 3739 3194539 - 3194499 - f 90 -9.9 -4.43189 | opp_overlap 3194497 AGCAAGCTCACAAAA GGCACGTAAATTTGC CGATTATTTAC GCAAATTTGCGTGCC AAAATTTTCATTCAT TERM 3740 3194579 - 3194564 - f 81 -3.3 -5.38958 | opp_overlap 3194564 3194573, overlap 3194575 ATTCATAAAGAAAAA TTGAG AACTTA CTCAA ATTTCTTTGAGTGTA TERM 3741 3194739 - 3194725 - f 76 -4.2 -5.00884 | overlap 3194726 ATCTCGTGCAAAAAA TGCGTA ATA TACGCC GCCTTGCAGTCACAG yhdG 3194774 - 3195739 + | tRNA-dihydrouridine synthase B fis 3195765 - 3196061 + | DNA-binding protein Fis TERM 3742 3196116 - 3196091 - f 74 -6 -4.7254 | opp_overlap 3196091 ATGCTTGATTAAAAA GGCGCTACTC GGCATG GGGAAGCGCC TTTTTTATAGGTGTC TERM 3743 3196091 - 3196116 + F 100 -8.2 -5.29782 | opp_overlap 3196091 ATGCTTGATTAAAAA GGCGCTACTC GGCATG GGGAAGCGCC TTTTTTATAGGTGTC insA 3196778 - 3197053 + | IS1 ORF1 insB 3197098 - 3197475 + | IS1 ORF2 acrF_1 3198529 - 3200238 + | N-terminal fragment of integral transmembrane protein involved with acridine resistance insA 3201427 - 3201152 - | IS1 ORF1 TERM 3744 3201482 - 3201494 + H 84 -4.7 -5.39905 | AGTTGGCAGCATCAC CTGCG GGG CGCTG TTTTTATTATTTCCT TERM 3745 3201614 - 3201598 - H 87 -9.5 -4.27259 | opp_overlap 3201600, overlap 3201611 CACAGACAGGTAAAA GACGTTT CCC AAACGTC CTATAACGATAATTT yhdW 3201757 - 3202674 + | putative periplasmic binding transport protein TERM 3746 3202691 - 3202712 + F 85 -13.7 -3.07233 | opp_overlap 3202690 3202693, overlap 3202693 3202708 TCGGTGTGAGGTAAC GAGCGTCGC TACG GCGGCGCTC TCTTCAGCGTTATGC TERM 3747 3202693 - 3202710 + F 73 -10.5 -3.09135 | opp_overlap 3202693 3202690, overlap 3202691 3202708 GGTGTGAGGTAACGA GCGTCGC TACG GCGGCGC TCTCTTCAGCGTTAT TERM 3748 3203260 - 3203284 + F 74 -7.1 -4.30933 | TCGTGGGCTTTATAT TCCGTCACC GCAGCTG GGAGACGGA TTTATTGCGTTTATC yhdY 3203930 - 3205036 + | putative transport system permease protein TERM 3749 3205828 - 3205847 + F 100 -13.6 -3.83214 | opp_overlap 3205828, overlap 3205817 TTCGAAAAGCATAAA GGCCATCC TTTC GGATGGCC TTTCGCTTGATTTGA TERM 3750 3205847 - 3205828 - f 100 -13.6 -4.208 | opp_overlap 3205828 3205817 TTCGAAAAGCATAAA GGCCATCC TTTC GGATGGCC TTTCGCTTGATTTGA TERM 3751 3206239 - 3206260 + F 74 -8.7 -3.91196 | opp_overlap 3206230 GCAAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 3752 3208725 - 3208737 + F 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 3753 3209333 - 3209370 + F 93 -6.3 -5.68438 | opp_overlap 3209329 3209335, overlap 3209335 ATTTTTAAAGAGCAA AACTTCGCAGTGAACCT TTGG AGGTACACTCTGAAGTA TTTTTTATTTAATCA TERM 3754 3209335 - 3209368 + F 86 -8.9 -4.47052 | opp_overlap 3209329 3209335, overlap 3209333 TTTTAAAGAGCAAAA CTTCGCAGTGAACCT TTGG AGGTACACTCTGAAG TATTTTTTATTTAAT TERM 3755 3209368 - 3209335 - f 75 -6.7 -4.49756 | opp_overlap 3209335 3209333, overlap 3209329 TTTTAAAGAGCAAAA CTTCGCAGTGAACCT TTGG AGGTACACTCTGAAG TATTTTTTATTTAAT TERM 3756 3211380 - 3211392 + F 71 -7.7 -4.00532 | overlap 3211368 3211366 CACCGCCGCGAGGTG GCGTA TAT TACGC TTTCCTCTTTCAGAG TERM 3757 3211412 - 3211426 + F 86 -4.2 -5.50925 | opp_overlap 3211412, overlap 3211401 3211413 CTCTTTCAGAGTCAA CCCTGA ATT TCAGGA TTTTTTCTCTTCGTT TERM 3758 3211413 - 3211425 + F 71 -7.7 -3.88115 | opp_overlap 3211412, overlap 3211401 3211412 TCTTTCAGAGTCAAC CCTGA ATT TCAGG ATTTTTTCTCTTCGT yrdA 3211456 - 3212226 + | putative transferase yrdB 3212459 - 3212202 - | hypothetical protein aroE 3213274 - 3212456 - | shikimate 5-dehydrogenase yrdC 3213851 - 3213279 - | putative ribosome maturation factor yrdD 3214398 - 3213856 - | putative DNA topoisomerase TERM 3759 3213911 - 3213901 - G 70 -5.4 -4.38712 | TTTACTGGCACAAAA GTGT TTT ACAC CCTGCGCGGTTTTCT TERM 3760 3214272 - 3214236 - G 89 -13.1 -3.34233 | overlap 3214239 3214265 CCAGAACTTTGACAA TATGTCCATCCGCTGAA GAT TTCAGAGGACGGACGTA GTCACACGCCGGATA TERM 3761 3214269 - 3214239 - G 89 -14.8 -2.53747 | overlap 3214236 3214265 GAACTTTGACAATAT GTCCATCCGCTGAA GAT TTCAGAGGACGGAC GTAGTCACACGCCGG smg 3214900 - 3214427 - | hypothetical protein smf 3215996 - 3214872 - | hypothetical protein def 3216126 - 3216635 + | peptide deformylase TERM 3762 3216696 - 3216718 + G 100 -14.9 -3.7821 | GTACACCTGACTTTG CAGCGCGTC ATCTC GACGCGCTG TTGTCTTCTGGTCAT TERM 3763 3216798 - 3216788 - g 74 -3.2 -5.02074 | GGACGCGGTAAAAAA CTGA TGC CCAG CCCGGTTAAAGTTCT TERM 3764 3216881 - 3216871 - g 85 -6.8 -4.77165 | overlap 3216872 GCGTCCACAAGAAAA CCAG CAA CTGG TCGCCGATCTACAGG fmt 3216650 - 3217597 + | methionyl-tRNA formyltransferase TERM 3765 3217613 - 3217631 + F 70 -2.2 -5.01535 | overlap 3217614 TAGTCCACTCTTCTA AGCCCGGT CTT GCCGTGCA TTTTTATACTTATGA TERM 3766 3217668 - 3217652 - g 88 -5.1 -5.17353 | overlap 3217655 ATACTTATGAAAAAA CAACGTA ATT TACGTAG CATGGCGGCCCAGGC TERM 3767 3217665 - 3217655 - g 75 -5.4 -4.67552 | overlap 3217652 CTTATGAAAAAACAA CGTA ATT TACG TAGCATGGCGGCCCA TERM 3768 3217791 - 3217805 + G 77 -10 -3.60971 | opp_overlap 3217760 AAGAGTTGTGCTTTG GCGTAC TGC GTACGC TTTCGCAGTTAGACT sun 3217643 - 3218932 + | 16S rRNA methyltransferase B trkA 3218954 - 3220330 + | potassium transporter peripheral membrane component TERM 3769 3220332 - 3220359 + T 100 -15.8 -3.89938 | opp_overlap 3220335 3220338, overlap 3220335 3220338 CTTTCTTCTTGTAAT TAATAAGGCGTC TAAT GACGCCTTATTA TTTCCCTTTGATTAT TERM 3770 3220356 - 3220335 - T 86 -13.1 -3.33696 | opp_overlap 3220332 3220335 3220338, overlap 3220338 TCTTCTTGTAATTAA TAAGGCGTC TAAT GACGCCTTA TTATTTCCCTTTGAT TERM 3771 3220335 - 3220356 + T 95 -13.1 -4.05629 | opp_overlap 3220335 3220338, overlap 3220332 3220338 TCTTCTTGTAATTAA TAAGGCGTC TAAT GACGCCTTA TTATTTCCCTTTGAT TERM 3772 3220338 - 3220353 + T 87 -10.4 -4.13254 | opp_overlap 3220335 3220338, overlap 3220335 3220332 TCTTGTAATTAATAA GGCGTC TAAT GACGCC TTATTATTTCCCTTT TERM 3773 3220353 - 3220338 - T 83 -10.4 -3.81146 | opp_overlap 3220338 3220335 3220332, overlap 3220335 TCTTGTAATTAATAA GGCGTC TAAT GACGCC TTATTATTTCCCTTT TERM 3774 3220938 - 3220885 - T 88 -12.6 -3.60475 | opp_overlap 3220899, overlap 3220888 3220891 AACAAACGCCTGAAA GCAGAAGGCCAGTGGTAAAAAAGT GATTTT ACTTTCTTGCCACTGGCCTCCCAG TTCCCCCGATTGCCA TERM 3775 3220935 - 3220888 - T 100 -18.7 -2.91888 | opp_overlap 3220899, overlap 3220885 3220891 AAACGCCTGAAAGCA GAAGGCCAGTGGTAAAAAAGT GATTTT ACTTTCTTGCCACTGGCCTCC CAGTTCCCCCGATTG TERM 3776 3220932 - 3220891 - T 100 -16.8 -3.60151 | opp_overlap 3220899, overlap 3220888 3220885 CGCCTGAAAGCAGAA GGCCAGTGGTAAAAAAGT GATTTT ACTTTCTTGCCACTGGCC TCCCAGTTCCCCCGA zntR 3221568 - 3221143 - | zinc-responsive transcriptional regulator TERM 3777 3221231 - 3221205 - G 70 -5.9 -4.26871 | gap 1, overlap 3221197 3221207 GAATCGAGCAATAAA CACTGCTATGGG CGGT CCCACAACAG-G CATCGTTAAGGCGTT TERM 3778 3221230 - 3221207 - G 76 -9.6 -3.72775 | overlap 3221197 3221205 ATCGAGCAATAAACA CTGCTATGGG CGGT CCCACAACAG GCATCGTTAAGGCGT yhdN 3221947 - 3221579 - | hypothetical protein TERM 3779 3222010 - 3222043 + r 82 -11.9 -3.37879 | opp_overlap 3222020, overlap 3222011 3222020 TGGGGATGCTACAGG TATAAAAAAACCCGC CGGG GCGGGTTTTTTTACG TTGCTTCAGATTACT TERM 3780 3222011 - 3222042 + r 81 -13.2 -2.62246 | opp_overlap 3222020, overlap 3222010 3222020 GGGGATGCTACAGGT ATAAAAAAACCCGC CGGG GCGGGTTTTTTTAC GTTGCTTCAGATTAC TERM 3781 3222033 - 3222020 - R 100 -9.5 -5.65177 | opp_overlap 3222011 3222010 3222020 ACAGGTATAAAAAAA CCCGC CGGG GCGGG TTTTTTTACGTTGCT TERM 3782 3222020 - 3222033 + r 100 -9.5 -5.54192 | opp_overlap 3222020, overlap 3222011 3222010 ACAGGTATAAAAAAA CCCGC CGGG GCGGG TTTTTTTACGTTGCT TERM 3783 3222043 - 3222068 + r 72 -8.3 -3.67102 | overlap 3222064 GGCGGGTTTTTTTAC GTTGCTTCAGA TTAC TCTGCAGCAGC TTCTGCTTTCTCTGA TERM 3784 3222064 - 3222074 + r 71 -6.8 -4.0371 | overlap 3222043 TCAGATTACTCTGCA GCAG CTT CTGC TTTCTCTGAACGATC rplQ 3222437 - 3222054 - | 50S ribosomal protein L17 rpoA 3223467 - 3222478 - | DNA-directed RNA polymerase subunit alpha TERM 3785 3222561 - 3222573 + g 74 -3.4 -5.01732 | CCAGCACGTCTTTAA TCTC AGTAA GAGA TTTTTTACCAAGGTT TERM 3786 3223508 - 3223490 - R 74 -10.4 -3.14132 | TCTCTTTGGTACTAA GCTTTACT TGG AGTAAAGC TCGACGATCAGGTGT rpsD 3224113 - 3223493 - | 30S ribosomal protein S4 TERM 3787 3223603 - 3223613 + g 70 -6.8 -4.12188 | overlap 3223600 CAGCATCAACTTCCA GCCA GGT TGGC TTTTCACGCTGCTCA TERM 3788 3224140 - 3224158 + r 76 -4.4 -5.00616 | opp_overlap 3224131 3224140 AACAAACCTGGAAAA CGAGGCGT TAT ACGCGACG TTTTTTCGGCGGACG rpsK 3224536 - 3224147 - | 30S ribosomal protein S11 TERM 3789 3224570 - 3224595 + r 70 -8.9 -3.39449 | overlap 3224571 ATTTCTTGATCGGTT TGCGCGGACCC TTAC GGGTACGTGCG TTGGTCTTGGTACGC TERM 3790 3224571 - 3224594 + r 71 -10.2 -2.63348 | overlap 3224570 TTTCTTGATCGGTTT GCGCGGACCC TTAC GGGTACGTGC GTTGGTCTTGGTACG rpsM 3224909 - 3224553 - | 30S ribosomal protein S13 TERM 3791 3224734 - 3224752 + g 77 -8.8 -4.05446 | ACAAATTTGGCAACT TCGTCACG CAG CGTGTCGA TTTGTCCTTCAGACA TERM 3792 3225026 - 3224997 - R 100 -12.3 -4.6645 | gap 1 CACAGACATACAAAA GATTG-GCTGGCTA ATC TAGCCAGCTCAACC CAACTTTGCAAGAAA rpmJ 3225172 - 3225056 - | 50S ribosomal protein L36 secY 3226535 - 3225204 - | preprotein translocase subunit SecY TERM 3793 3225737 - 3225691 - G 73 -9.4 -3.56921 | opp_overlap 3225697 3225705, overlap 3225689 GGGAACAGAATAATA CTGGAAGCGAAGATTGCCGGGA TTA CCCCCGCCATATTCACTTTCAG CGGTAAATGTGTGCT rplO 3226977 - 3226543 - | 50S ribosomal protein L15 TERM 3794 3226923 - 3226936 + g 75 -5.2 -4.59853 | opp_overlap 3226916, overlap 3226916 CGATACCACGACCCA GGCG TTTACC CGCC TTTTTAGAGCCTTCG rpmD 3227160 - 3226981 - | 50S ribosomal protein L30 rpsE 3227667 - 3227164 - | 30S ribosomal protein S5 rplR 3228035 - 3227682 - | 50S ribosomal protein L18 rplF 3228578 - 3228045 - | 50S ribosomal protein L6 rpsH 3228983 - 3228591 - | 30S ribosomal protein S8 rpsN 3229322 - 3229017 - | 30S ribosomal protein S14 rplE 3229876 - 3229337 - | 50S ribosomal protein L5 TERM 3795 3229714 - 3229732 + g 93 -6 -5.24531 | TTGCTGCCAGGTCTG CTGCTG CGTTATC CAGCAG TTTTTTGTCAGCGAT TERM 3796 3229820 - 3229831 + g 81 -4.4 -5.12617 | opp_overlap 3229820, overlap 3229799 AGAATTGTAGTTAAA CTCA GTCA TGAG TTTTTTAACTACTTC rplX 3230205 - 3229891 - | 50S ribosomal protein L24 rplN 3230587 - 3230216 - | 50S ribosomal protein L14 TERM 3797 3230702 - 3230727 + r 90 -14.9 -3.25823 | opp_overlap 3230702, overlap 3230706 TATGGGTAGAAAAAA TAAACGGCTCA TTTC TGAGCCGTTTA TTCGTATCGAGAGAG TERM 3798 3230727 - 3230702 - R 100 -14.9 -5.252 | opp_overlap 3230702 3230706 TATGGGTAGAAAAAA TAAACGGCTCA TTTC TGAGCCGTTTA TTCGTATCGAGAGAG TERM 3799 3230706 - 3230723 + r 91 -11.3 -4.29106 | opp_overlap 3230702, overlap 3230702 GGTAGAAAAAATAAA CGGCTCA TTTC TGAGCCG TTTATTCGTATCGAG rpsQ 3231006 - 3230752 - | 30S ribosomal protein S17 TERM 3800 3230974 - 3230927 - G 86 -9.5 -4.36914 | gap 2, opp_overlap 3230946 GGGTGTTTCACAAAA CGTTCGATAGCAACAACAATGGA TTTC TCCATT-TTGTCGCTAAC-AACG CGACCTTGCAGAGTA rpmC 3231197 - 3231006 - | 50S ribosomal protein L29 rplP 3231607 - 3231197 - | 50S ribosomal protein L16 rpsC 3232321 - 3231620 - | 30S ribosomal protein S3 rplV 3232671 - 3232339 - | 50S ribosomal protein L22 rpsS 3232964 - 3232686 - | 30S ribosomal protein S19 rplB 3233802 - 3232981 - | 50S ribosomal protein L2 TERM 3801 3233838 - 3233858 + r 75 -9.7 -3.57462 | opp_overlap 3233841, overlap 3233841 CTCAGCGCCGCCAAC GAAGTCCAG ATT CTGGCCTTC TTTCAGGGTGACGTA rplW 3234122 - 3233820 - | 50S ribosomal protein L23 TERM 3802 3234089 - 3234077 - G 78 -9.1 -3.85817 | ACGCTTTTTCAGAAA CGTGC GGT GCACG CAGCACCTTCAGCAG rplD 3234724 - 3234119 - | 50S ribosomal protein L4 TERM 3803 3234692 - 3234704 + g 78 -10.5 -3.42663 | opp_overlap 3234687, overlap 3234691 TTCGGAAACAGTCAG CGCGC TCT GCGCG TCTTTCAATACTAAT rplC 3235364 - 3234735 - | 50S ribosomal protein L3 rpsJ 3235708 - 3235397 - | 30S ribosomal protein S10 TERM 3804 3236169 - 3236207 + r 71 -3.9 -4.84311 | gap 1, overlap 3236171 CAAAGCATGGCTTGT TACCTGA-CAGATTTACG TGCC CGTTACTCTGGTCAGGTC TTTTGTTCTATCAAG bfr 3237027 - 3236551 - | bacterioferritin, iron storage and detoxification protein TERM 3805 3236868 - 3236844 - G 79 -2.2 -5.26119 | gap 1, opp_overlap 3236844 3236846, overlap 3236839 3236846 CTTCTAAAAACAAAA TACGCTCGATA TACT TATC-AGCGTG TTTCATCTCATCGAT SDY_3499 3237294 - 3237100 - | bacterioferritin-associated ferredoxin TERM 3806 3237447 - 3237432 - R 100 -11.8 -4.72986 | opp_overlap 3237432 TACGGGCAGCAAAAA GGGCGC CGAA GCGCCC TTTTCAATTCAAAAC TERM 3807 3237432 - 3237447 + r 95 -11.8 -4.27316 | opp_overlap 3237432 TACGGGCAGCAAAAA GGGCGC CGAA GCGCCC TTTTCAATTCAAAAC tufA 3238661 - 3237477 - | elongation factor Tu TERM 3808 3238440 - 3238490 + g 74 -2.5 -5.06414 | overlap 3238410 3238442 GTGTGCGTAGTGACG GGTCGGGGTATCGTATTCAACGT GAGAA GTGTTGATGGTGATACCACGAGC TTTTTCTTCCGGCGC TERM 3809 3238706 - 3238681 - R 93 -15.5 -2.78935 | opp_overlap 3238677 3238676 ATATTCCTTACTATA GTGCTCTCCCC TTCA GGAGAGAGCAC GGGACTTTGGTATTA fusA 3240846 - 3238732 - | elongation factor G TERM 3810 3240918 - 3240893 - R 82 -11.2 -3.63895 | gap 1, opp_overlap 3240883, overlap 3240883 TTTAAGTAGCCCAAA GCGGGCTGCTT ACTGG AAGC-GCCCGC CTAGTGACTAAAACT rpsG 3241413 - 3240943 - | 30S ribosomal protein S7 rpsL 3241884 - 3241510 - | 30S ribosomal protein S12 TERM 3811 3241954 - 3241932 - R 100 -12.8 -4.7268 | AAACACGTAATAAAA CGTCCTCACA AAA TATGAGGACG CCGAATTTTAGGGCG yheL 3242297 - 3242010 - | tRNA 2-thiouridine synthesizing protein B yheM 3242664 - 3242305 - | hypothetical protein yheN 3243050 - 3242664 - | hypothetical protein yheO 3243784 - 3243050 - | hypothetical protein TERM 3812 3243567 - 3243598 + g 76 -7.4 -4.21194 | gap 1 ATCTTCCGGCCTGTA TGTTCA-CCGTTAGC AAT GCGAATGGCTGAACA TTTTAGATCCTGCAA TERM 3813 3243797 - 3243784 - R 78 -6.7 -4.59226 | opp_overlap 3243794 3243795 ACATGAAAAAAAACA CTCCT TTTC AGGAG CCTGTCGTTAACTTT TERM 3814 3243856 - 3243868 + r 72 -9.1 -3.54919 | opp_overlap 3243854 3243852 3243856 AACTAAATTAATACA GCGGA GGT TCCGC TTTCCAGCACTAATT TERM 3815 3243895 - 3243938 + r 72 -4.7 -4.61482 | gap 2, opp_overlap 3243907, overlap 3243896 3243907 AATTATATCCGGCCT GTAATAAAAAAACCGCCGCCT GGTC AGGCGGCGG--TTCTTAATGC TTATTTTTTAGCAGA TERM 3816 3243896 - 3243941 + r 76 -4.2 -5.0133 | gap 2, opp_overlap 3243907, overlap 3243895 3243907 ATTATATCCGGCCTG TAA-TA-AAAAAACCGCCGCCT GGTC AGGCGGCGGTTCTTAATGCTTA TTTTTTAGCAGAATC TERM 3817 3243928 - 3243907 - R 100 -17.3 -5.7946 | opp_overlap 3243895 3243896 3243907 CCTGTAATAAAAAAA CCGCCGCCT GGTC AGGCGGCGG TTCTTAATGCTTATT TERM 3818 3243907 - 3243928 + r 100 -17.3 -3.79396 | opp_overlap 3243907, overlap 3243895 3243896 CCTGTAATAAAAAAA CCGCCGCCT GGTC AGGCGGCGG TTCTTAATGCTTATT fkpA 3244733 - 3243939 - | FKBP-type peptidyl-prolyl cis-trans isomerase slyX 3244954 - 3245172 + | hypothetical protein TERM 3819 3245178 - 3245206 + T 87 -14.7 -2.85763 | opp_overlap 3245185, overlap 3245185 ACATTATTGAGGCGT AAAAAAAGCGGGG ATT CCCCGCTTTTTTG TCACTTTTTCGGTAT TERM 3820 3245185 - 3245199 + T 100 -12.8 -5.35222 | opp_overlap 3245185, overlap 3245178 TGAGGCGTAAAAAAA GCGGGG ATT CCCCGC TTTTTTGTCACTTTT TERM 3821 3245199 - 3245185 - T 100 -12.8 -5.42259 | opp_overlap 3245185 3245178 TGAGGCGTAAAAAAA GCGGGG ATT CCCCGC TTTTTTGTCACTTTT TERM 3822 3245226 - 3245247 + T 75 -10.1 -3.53012 | TTTTTCGGTATTAGT GGCAACCGC AACC GCCGTTGCC TTTACCGCCACAGCA slyD 3245799 - 3245221 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 3823 3245773 - 3245784 + g 72 -5.8 -4.39989 | overlap 3245757 CTGATAGGCCAGGCT GACC ACCA GGTC TTTTGCTACTTTCAT SDY_3511 3246094 - 3245894 - | hypothetical protein kefB 3247648 - 3246104 - | NEM-activable K+/H+ antiporter TERM 3824 3247164 - 3247145 - G 77 -10 -3.63569 | CGAACCCGCCAACAA CGGCACTA ACGC CAGTGCCG GGATCACCGCCAGAT yheR 3248202 - 3247648 - | glutathione-regulated potassium-efflux system ancillary protein KefG TERM 3825 3249627 - 3249603 - g 93 -12.9 -3.60798 | overlap 3249599 3249612 AGGGCGATAAAGTAA CCGAAGAAACG CGC CGCTTCTCCGG TGGGGAAAAAGCCCG TERM 3826 3249654 - 3249638 - g 70 -5 -4.56597 | opp_overlap 3249638, overlap 3249612 TCCGGTGGGGAAAAA GCCCGC CTGGT GCTGGC ATTAATCGTCTGGCA yheS 3248330 - 3250243 + | putative ABC transporter ATP-binding protein TERM 3827 3250396 - 3250409 + G 70 -4.5 -4.45083 | TGGCAGCGACTGGAG TTGCC CGAC GGCGA TTTTGTCGATCTCGC TERM 3828 3250448 - 3250463 + G 72 -7.5 -3.86835 | opp_overlap 3250435, overlap 3250459 AAGCCCCTGCACAGG CGCGG CATAAA CCGCG TTTAGTGGTATTTCA yheT 3250243 - 3251265 + | putative hydrolase TERM 3829 3251397 - 3251373 - g 78 -8.5 -4.20769 | ACACTTGAACAGAAA GTCGCCGACGT CAA ACGCCAGCTAC AGTGCGGAGAAGCGG yheU 3251259 - 3251477 + | hypothetical protein yhfA 3252860 - 3252456 - | hypothetical protein TERM 3830 3253272 - 3253247 - g 70 -10.5 -2.76171 | overlap 3253244 ACCCATCCAAGAGCA CGCTTATTCAC CAGG GTGAAAAAGCG GAAACGCTGTACTAC crp 3253162 - 3253794 + | cAMP-regulatory protein TERM 3831 3253806 - 3253830 + F 100 -16.5 -4.86731 | overlap 3253796 TTAATCCCGTCGGAG TGGCGCGTTAC CTG GTAGCGCGCCA TTTTGTTTCCCCCGA yhfK 3253845 - 3255935 + | hypothetical protein argD 3257222 - 3256002 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein pabA 3257871 - 3257308 - | para-aminobenzoate synthase component II fic 3258505 - 3257903 - | cell filamentation protein Fic TERM 3832 3258200 - 3258214 + g 75 -5.6 -4.70659 | overlap 3258202 CTCCAGATCCTGCAT CAGGGC ATT GCCCTC TTTTTCGATATAAGC TERM 3833 3258202 - 3258212 + g 74 -8.2 -3.96999 | overlap 3258200 CCAGATCCTGCATCA GGGC ATT GCCC TCTTTTTCGATATAA yhfG 3258662 - 3258495 - | hypothetical protein TERM 3834 3258757 - 3258736 - R 100 -17.3 -3.46602 | GCCGGGAGAGCAGAA GCGCGGGCA AGAT TGCCCGCGC GAGAAATCATTACGG ppiA 3259339 - 3258767 - | peptidyl-prolyl cis-trans isomerase A (rotamase A) TERM 3835 3259565 - 3259584 + H 73 -2.1 -5.26119 | overlap 3259566 AAAATCGCCCGCTCG CGGCATA TCCCGC TATGCCA TTTTATTTTTGAACG TERM 3836 3259994 - 3260011 + G 74 -7.7 -4.015 | gap 1, overlap 3259998 ATGTATGAAGGGCGT CAGCGCGG TTC CCGC-CTG TTATTTACTGACTCC TERM 3837 3260203 - 3260193 - g 81 -6.8 -4.59511 | AACATGCGCCAAAAA CGGA TGC TCCG GTAGCGAAAGAAAAG yhfC 3259610 - 3260791 + | hypothetical protein TERM 3838 3260799 - 3260826 + F 93 -10.5 -4.39166 | overlap 3260798 3260800 CTCATTAATTGCTCA TGCCGGACGGC ACTATC GTCGTCCGGCC TTTTCCTCTCTAACC TERM 3839 3260800 - 3260825 + F 86 -14 -3.23018 | overlap 3260798 3260799 TCATTAATTGCTCAT GCCGGACGGC ACTATC GTCGTCCGGC CTTTTCCTCTCTAAC TERM 3840 3262405 - 3262376 - g 82 -9.3 -4.24342 | gap 1 GCTGCCATCAACAAA GGCTGTCA-CACCG TTG CGGCGCTGAAAGCC GAAACCAAAGCGGGT TERM 3841 3262865 - 3262842 - g 70 -5.2 -4.3467 | gap 1, opp_overlap 3262850 3262853, overlap 3262828 3262843 ATCTCTACACCAAAA TCACC-GGCTC CCA GCGCCTGGCGA TGTTTGGCGCACAGA nirB 3261053 - 3263596 + | nitrite reductase (NAD(P)H) subunit TERM 3842 3263804 - 3263819 + G 70 -6.1 -4.27316 | opp_overlap 3263815 TGTGGGTCGCCAGCC CGCTG AAAAAA CAGCG TTTTCGCTTAAGCGA TERM 3843 3263828 - 3263815 - g 71 -2.3 -5.00884 | opp_overlap 3263804 3263819 AGCCCGCTGAAAAAA CAGCG TTTT CGCTT AAGCGACGGCTTGTG nirD 3263593 - 3263919 + | nitrite reductase small subunit TERM 3844 3263928 - 3263948 + F 89 -8.9 -4.68994 | overlap 3263929 CGGTTAATGTTTTAA CGGGAGGCG CAA TGCCTCCCC TTTTTGCATGGTCCT TERM 3845 3263929 - 3263947 + F 85 -12.4 -3.40674 | overlap 3263928 GGTTAATGTTTTAAC GGGAGGCG CAA TGCCTCCC CTTTTTGCATGGTCC TERM 3846 3263958 - 3263991 + F 81 -4.7 -5.16472 | gap 1, overlap 3263959 CTCCCCTTTTTGCAT GGTCCTGTAATA-ATC TTC GGTATATTGCAGGACA TTTTTTAAACTTTTT TERM 3847 3263959 - 3263990 + F 72 -8.2 -3.67443 | gap 1, overlap 3263958 TCCCCTTTTTGCATG GTCCTGTAATA-ATC TTC GGTATATTGCAGGAC ATTTTTTAAACTTTT TERM 3848 3264498 - 3264481 - g 74 -7.7 -4.07568 | opp_overlap 3264481 TCGCGCTGGCTAAAA CCACTGC ACCG GCAATGG TACTGTTCTTCAAAG nirC 3264045 - 3264851 + | nitrite transporter NirC TERM 3849 3265453 - 3265413 - g 79 -9.8 -3.85698 | CGTTTCTGGGAGAAA TTGTTTGTTAACGACCGC CTGGC GCAGTCGCTGGCAAACAA CGATCAGAAAGCCAT cysG 3264870 - 3266243 + | siroheme synthase SDY_3531 3266655 - 3266260 - | iso-IS1 ORF2 gadA 3266877 - 3268271 + | glutamate decarboxylase isozyme TERM 3850 3268287 - 3268332 + F 93 -11.9 -3.72324 | opp_overlap 3268291, overlap 3268291 TAACATAACGTTGTA AAAACCGAATGCCCAGCCTTT AAAA AACAGCTGGGCATTCGGTTGC TTATTAATCGCAATA TERM 3851 3268328 - 3268291 - f 100 -19.3 -4.60255 | opp_overlap 3268287 3268291 ATAACGTTGTAAAAA CCGAATGCCCAGCCTTT AAAA AACAGCTGGGCATTCGG TTGCTTATTAATCGC TERM 3852 3268291 - 3268328 + F 100 -17.1 -3.56142 | opp_overlap 3268291, overlap 3268287 ATAACGTTGTAAAAA CCGAATGCCCAGCCTTT AAAA AACAGCTGGGCATTCGG TTGCTTATTAATCGC yhiX 3268639 - 3269463 + | DNA-binding transcriptional regulator GadX TERM 3853 3269506 - 3269488 - T 100 -5.2 -6.06529 | CAGACATAAAAAAAA CCCGGC ATAGGGG ACCGGG AAGAGGATAGTCTGC SDY_3535 3270360 - 3269965 - | iso-IS1 ORF2 SDY_3536 3270555 - 3270773 + | hypothetical protein TERM 3854 3271404 - 3271417 + T 70 -9.5 -2.99057 | overlap 3271402 TCCCTGATGATTTCT GCCGG GCTA CCGGC TAGTTCTCTTTCGCA TERM 3855 3271650 - 3271683 + T 79 -12.6 -2.92667 | opp_overlap 3271650, overlap 3271647 3271652 ATGGTTAGCAGGAAA GAGTAAGGCTGAAC CCTCAC GTTCAACCTTACTC TCATTTACACGTTAC TERM 3856 3271683 - 3271650 - T 100 -14.8 -3.78953 | opp_overlap 3271650 3271647 3271652 ATGGTTAGCAGGAAA GAGTAAGGCTGAAC CCTCAC GTTCAACCTTACTC TCATTTACACGTTAC yhiV 3274807 - 3271688 - | putative transport system permease protein yhiU 3275986 - 3274832 - | multidrug resistance efflux protein MdtE TERM 3857 3275636 - 3275674 + g 71 -9.6 -3.56594 | gap 1, overlap 3275660 3275661 GTTAAAGGTGATGCG GGCATTGCTGGCGGTAG AGAGCG CTTTCGCCAGCGA-GCC TTTGGCGGAGTTTAG TERM 3858 3276162 - 3276144 - R 95 -3.1 -6.02345 | overlap 3276145 CAACGACAAAAAAAA TGTTGCC GTTCT GCCAACA GTTCCTGCCAGCATT yhiE 3276852 - 3276325 - | hypothetical protein TERM 3859 3277225 - 3277205 - H 85 -14.1 -3.05384 | opp_overlap 3277205 CTTGTTTCGACTTAA GCTGGCAAT TGG ATTGCCAGC TTTCTTTTAACGCAT TERM 3860 3277205 - 3277225 + H 100 -14.1 -4.65263 | opp_overlap 3277205 CTTGTTTCGACTTAA GCTGGCAAT TGG ATTGCCAGC TTTCTTTTAACGCAT insA 3277570 - 3277845 + | IS1 ORF1 insB 3277890 - 3278267 + | IS1 ORF2 TERM 3861 3278412 - 3278378 - T 71 -10.1 -3.26545 | opp_overlap 3278386 3278388, overlap 3278379 CGGAGAGAGTATTAA TCGGATCATAGTCAC ATCAA GTGACTATGATCTGG GTGACAACAGGGATA TERM 3862 3278411 - 3278379 - T 83 -13.6 -2.55606 | opp_overlap 3278386 3278388, overlap 3278378 GGAGAGAGTATTAAT CGGATCATAGTCAC ATCAA GTGACTATGATCTG GGTGACAACAGGGAT hdeD 3279001 - 3278429 - | acid-resistance membrane protein TERM 3863 3279406 - 3279419 + G 72 -6.7 -4.25283 | GACGAATCCTTCCAG CCAAC TGCA GTTGG TTTTGCTGAAGCGCT hdeA 3279256 - 3279588 + | acid-resistance protein TERM 3864 3279625 - 3279672 + F 73 -10.8 -3.00259 | gap 1, opp_overlap 3279629, overlap 3279629 3279665 TACTTCCTTGCATAT TGAACAGGCCGGAATATCTTCTT TAA AAGCAGCTATTCCT-CCTGTTCA TATATAATCTCTATA hdeB 3279692 - 3280030 + | acid-resistance protein TERM 3865 3280078 - 3280048 - T 91 -8.2 -4.93968 | opp_overlap 3280048 AGGTACAAGTAAAAA GGAGTAGCAAGTTG AGC CATCTGGCTGCTCC TTTTTGCATTTTTAT TERM 3866 3280048 - 3280078 + T 100 -10.4 -4.93595 | opp_overlap 3280048 AGGTACAAGTAAAAA GGAGTAGCAAGTTG AGC CATCTGGCTGCTCC TTTTTGCATTTTTAT SDY_3546 3280761 - 3280366 - | iso-IS1 ORF2 TERM 3867 3281535 - 3281559 + r 83 -10.8 -3.72743 | overlap 3281532 3281537 ATAGTTATTTATTCG TAGGAGTACC AGTGC GGTACTCCTG TTGCTTTTAATGATC TERM 3868 3281537 - 3281557 + r 79 -11.2 -3.43546 | overlap 3281535 3281532 AGTTATTTATTCGTA GGAGTACC AGTGC GGTACTCC TGTTGCTTTTAATGA shuV 3282336 - 3281566 - | hemin importer ATP-binding subunit shuU 3283289 - 3282333 - | putative permease of iron compound ABC transport system shuY 3283999 - 3283376 - | hypothetical protein TERM 3869 3283573 - 3283593 + g 86 -12.6 -3.5525 | overlap 3283570 GAATGGCGTAGTCTA GCTGGCTG GTTTG CAGCCAGC TTTCCGCCAGTGTCT shuX 3284493 - 3283999 - | hypothetical protein TERM 3870 3284149 - 3284125 - G 74 -6.4 -4.56597 | opp_overlap 3284130 TTCTTTGTTGAAAAA GAGAATGGAC GCGGT GTCCATGCCC ATAAATTTACGTTCG shuT 3286855 - 3285863 - | putative periplasmic binding protein SDY_3553 3286885 - 3287181 + | hypothetical protein shuA 3287457 - 3289439 + | outer membrane heme/hemoglobin receptor TERM 3871 3289445 - 3289464 + F 100 -13.6 -4.03234 | opp_overlap 3289443 TCAATGGTAATCATC TGCCCCGA TATT TCGGGGCA TTTATCTGGAAGGAA TERM 3872 3289842 - 3289832 - g 86 -6.8 -4.97158 | overlap 3289804 CCACATCAAAGAAAA CACG GCT CGTG GCGAACGCCAGAGGA shuS 3289488 - 3290516 + | putative heme/hemoglobin transport protein TERM 3873 3290531 - 3290558 + T 72 -6.2 -4.24075 | ACGTATAATTAACGG GAGGTCTGGCTA TTTA TTGCTGGGCCTC TTTATATTGATCAAT yhiF 3291107 - 3290577 - | hypothetical protein TERM 3874 3291252 - 3291222 - R 80 -12.7 -3.10522 | opp_overlap 3291223 3291248, overlap 3291225 ATTTTATGTAATACA TGATGCAGATGCT GAGAA AGCATCTGCATCT TTCGGTGGTGTTATT TERM 3875 3291223 - 3291251 + r 100 -16.2 -3.72009 | opp_overlap 3291222 3291225, overlap 3291248 TTTTATGTAATACAT GATGCAGATGCT GAGAA AGCATCTGCATC TTTCGGTGGTGTTAT TERM 3876 3291249 - 3291225 - R 82 -13 -2.76322 | opp_overlap 3291223 3291248, overlap 3291222 TTATGTAATACATGA TGCAGATGCT GAGAA AGCATCTGCA TCTTTCGGTGGTGTT slp 3291862 - 3291263 - | outer membrane protein induced after carbon starvation TERM 3877 3291346 - 3291312 - G 74 -10.6 -3.14564 | GCATTGGTGTAGTAA GGCGCACCCCAGCCCG GTT CCGGCCAGAATGCACC ATAGCCGTAATCCCA SDY_3558 3292523 - 3292918 + | iso-IS1 ORF2 arsC 3293477 - 3293052 - | arsenate reductase arsB 3294800 - 3293490 - | arsenical pump membrane protein TERM 3878 3294477 - 3294456 - G 73 -9.3 -3.58343 | GCCATCATTGGCAAA CAGGGCCGC AACG GCGGCACCG AGCAGGACAATCCAG TERM 3879 3294573 - 3294558 - G 90 -6.8 -5.08824 | TGCCCATTCAAAAAA GCCGGA CTCA TCCAGC AGCAGGCTGATGATA arsR 3295187 - 3294834 - | DNA-binding transcriptional repressor ArsR TERM 3880 3295337 - 3295368 + r 75 -9.7 -3.53091 | gap 1, opp_overlap 3295346, overlap 3295346 GGTCTGAATCAGGAC GTAAAAAAACCGAC TTTGC GTCGG-TTTTTTAC TTTCCAGCCCAGAGT TERM 3881 3295360 - 3295346 - R 91 -7.1 -5.48825 | opp_overlap 3295337 3295346 CAGGACGTAAAAAAA CCGAC TTTGC GTCGG TTTTTTACTTTCCAG TERM 3882 3295346 - 3295360 + r 90 -7.1 -5.37593 | opp_overlap 3295346, overlap 3295337 CAGGACGTAAAAAAA CCGAC TTTGC GTCGG TTTTTTACTTTCCAG TERM 3883 3295571 - 3295603 + r 100 -16.6 -3.01791 | opp_overlap 3295580, overlap 3295580 TGTTCGAATCCGGAC GTAAAAAAACCGAC TTCGC GTCGGTTTTTTTAC TCTTCAGCCCAGAGT TERM 3884 3295594 - 3295580 - R 91 -7.1 -5.47218 | opp_overlap 3295571 3295580 CCGGACGTAAAAAAA CCGAC TTCGC GTCGG TTTTTTTACTCTTCA TERM 3885 3295580 - 3295594 + r 93 -7.1 -5.63374 | opp_overlap 3295580, overlap 3295571 CCGGACGTAAAAAAA CCGAC TTCGC GTCGG TTTTTTTACTCTTCA TERM 3886 3296032 - 3296058 + r 100 -13.8 -3.71649 | opp_overlap 3296023 3296032 CGGAAACGTAATTAA GGGCTAAGAGCA CAC TACTCTTAGCCC TTTAACATTTAACGC TERM 3887 3296058 - 3296032 - R 100 -16 -3.43217 | opp_overlap 3296032, overlap 3296023 CGGAAACGTAATTAA GGGCTAAGAGCA CAC TACTCTTAGCCC TTTAACATTTAACGC gor 3297419 - 3296067 - | glutathione reductase yhiR 3298333 - 3297491 - | hypothetical protein TERM 3888 3297808 - 3297822 + g 75 -5.6 -4.58773 | overlap 3297803 CTATCCCGCTGACTA CCGCCT GAT AGTCGG TTTTCATTTCATACG TERM 3889 3298380 - 3298361 - H 76 -4.8 -4.8622 | overlap 3298362 TCCGGTAAGTAAAAA TCGGCCCG TATT CGGGGCGC ACAAAAGCCTATCAG TERM 3890 3298933 - 3298920 - g 79 -2.3 -5.24531 | overlap 3298931 ACGGCGCAGAAAAAA GCGGT TGAT AACGC ACTGCGCGACTTTGA TERM 3891 3299415 - 3299405 - g 70 -4.6 -4.46581 | opp_overlap 3299405 TAAAATGGCAGAAAA CCCG CAG CAGG TGCTTGATTTCTTAA TERM 3892 3300494 - 3300472 - g 74 -10.6 -3.21276 | opp_overlap 3300460, overlap 3300470 CGTTCCTCGACAACA TTCTGAGCCG TGG CGGTTCAGAA GAGCCGATGGATCTG prlC 3298536 - 3300578 + | oligopeptidase A TERM 3893 3300630 - 3300609 - g 79 -10.1 -3.794 | opp_overlap 3300611, overlap 3300611 GCTTAATTGATGAAA CAGGCACCG GAGA CGGTGCCTT ATCTGTTCTGGCGAC TERM 3894 3300611 - 3300628 + G 91 -12.7 -3.72788 | opp_overlap 3300609 3300611 TTAATTGATGAAACA GGCACCG GAGA CGGTGCC TTATCTGTTCTGGCG TERM 3895 3300628 - 3300611 - g 86 -12.7 -3.48105 | opp_overlap 3300611, overlap 3300609 TTAATTGATGAAACA GGCACCG GAGA CGGTGCC TTATCTGTTCTGGCG yhiQ 3300584 - 3301336 + | putative methyltransferase TERM 3896 3301369 - 3301344 - T 100 -19.1 -4.20806 | opp_overlap 3301344 CAGTGTAAAAGTAAA GCAGGGTAGCG ATAA CGCTACCCTGC TTTCTGCAAGAATAA TERM 3897 3301344 - 3301369 + T 100 -19.1 -3.86346 | opp_overlap 3301344 CAGTGTAAAAGTAAA GCAGGGTAGCG ATAA CGCTACCCTGC TTTCTGCAAGAATAA yhiP 3302850 - 3301588 - | putative transport protein TERM 3898 3303140 - 3303123 - R 100 -14.1 -4.77757 | CGCCAAAAAGCAAAA CGCCCGC ATAT GCGGGCG TTCAGGAACACGTCG uspA 3303601 - 3303167 - | universal stress protein; broad regulatory function? yhiO 3303992 - 3304327 + | universal stress protein UspB TERM 3899 3304379 - 3304358 - T 100 -13.7 -5.66684 | opp_overlap 3304356 3304355 3304358 TAACGCATAAAAAAA GCGGGCCAG TAAA CTGACCCGC TCGTTTTGGTGCGTA TERM 3900 3304358 - 3304379 + T 77 -11.5 -3.14218 | opp_overlap 3304358, overlap 3304356 3304355 TAACGCATAAAAAAA GCGGGCCAG TAAA CTGACCCGC TCGTTTTGGTGCGTA pitA 3305897 - 3304398 - | low-affinity phosphate transport TERM 3901 3305278 - 3305297 + g 70 -4.2 -4.65933 | overlap 3305274 ATACGCGTCCAGAAC GGCGGC TTTTTCTT GCCGTC TTTCTTTTCACGCTC yhiN 3306129 - 3307331 + | hypothetical protein SDY_3571 3307735 - 3308091 + | iso-IS1 ORF2 SDY_3572 3308445 - 3308101 - | hypothetical protein SDY_3573 3308858 - 3308454 - | hypothetical protein TERM 3902 3308946 - 3308973 + r 76 -4 -5.01732 | opp_overlap 3308951, overlap 3308951 GAAATAAAGGCGAAA AAAAACGGGACC TTGT GGCCCCGTTCTG TTTTTTAGCGAACTT TERM 3903 3308968 - 3308951 - R 100 -10.5 -5.82388 | opp_overlap 3308946 3308951 AAAGGCGAAAAAAAA CGGGACC TTGT GGCCCCG TTCTGTTTTTTAGCG TERM 3904 3308951 - 3308968 + r 76 -8.3 -4.18465 | opp_overlap 3308951, overlap 3308946 AAAGGCGAAAAAAAA CGGGACC TTGT GGCCCCG TTCTGTTTTTTAGCG glgP 3311434 - 3308987 - | glycogen phosphorylase TERM 3905 3311052 - 3311084 + g 72 -4.5 -4.72497 | overlap 3311053 3311055 AAGCAAGCCGCCAGA CGTCCCAGGCCACCG TTA CCGAGGCCCGGGTCA TTTTCTTCATCAATC glgA 3312886 - 3311453 - | glycogen synthase TERM 3906 3312028 - 3312059 + g 73 -3.8 -4.85433 | gap 1 CTTTATCGTCAACCT TAAGCCCCA-TTGCG ATT TGTAACTGGCGCTTA TTTTTCGCTTTATCT TERM 3907 3312120 - 3312132 + g 82 -7.7 -4.46212 | opp_overlap 3312113 AACAGTAAGTCCGTC TCTGG ACT CCAGA TTTTCTCGTCCACGC glgC 3314181 - 3312886 - | glucose-1-phosphate adenylyltransferase TERM 3908 3313690 - 3313704 + g 84 -7.8 -4.60487 | opp_overlap 3313690 3313689 TGGCATACAAGCAAC GGTGCA ACG TGCGCC TTTTTCGACGTGGTC glgX 3316172 - 3314199 - | glycogen debranching enzyme TERM 3909 3315805 - 3315776 - G 70 -10 -3.2056 | opp_overlap 3315792 AGTCATAGTGATCAA CCACCACTACGC ATTTCG GCGCAATGGCGG CGTTGTCGCGATAGT TERM 3910 3316149 - 3316163 + g 77 -10 -3.62644 | overlap 3316157 GCCGAGGGGAGCGGG CTTGCC AAT GGCAAG TTGTGTCATTCTGCC glgB 3318355 - 3316169 - | glycogen branching enzyme TERM 3911 3316746 - 3316756 + g 83 -5.4 -5.0538 | TCGCCCGGCATGCGG TCGA GAA TCGA TTTTTTACCGTGGAC TERM 3912 3317632 - 3317650 + g 91 -7.4 -5.09173 | CATATATAGAGATTG GCGCATCA AAC TGATTCGC TTTTTTGCGCTCTTC asd 3319731 - 3318628 - | aspartate-semialdehyde dehydrogenase yhgN 3319923 - 3320516 + | dITP- and XTP- hydrolyzing protein TERM 3913 3320525 - 3320556 + T 78 -6.6 -4.67982 | opp_overlap 3320525, overlap 3320520 GGGGTAAGGTTCAAA CAGGTGCTGC ACACAACCAGAC GCGGCACCTG TTTTATTACCTGAAC SDY_3581 3321857 - 3320562 - | putative DNA processing protein TERM 3914 3321539 - 3321487 - G 74 -8.4 -3.9777 | gap 1 GTTAAGATCCATAAA CCGGCGCGTTGCCACTTATCTACCG CCAA CGCCAGACTA-TGACCACGCGCCAG CAAGCCAAGAATACG SDY_3582 3322723 - 3322235 - | hypothetical protein SDY_3583 3323002 - 3323397 + | iso-IS1 ORF2 insA 3323545 - 3323820 + | IS1 ORF1 insB 3323865 - 3324242 + | IS1 ORF2 SDY_3586 3325410 - 3324253 - | hypothetical protein TERM 3915 3325540 - 3325509 - R 86 -8.8 -4.52142 | opp_overlap 3325513, overlap 3325503 3325513 AGGAGAAAAGAGAAA TGAATTACTGCGAG CAAG CTCGCAGTAATTTG TCGCAGTAATTAACT TERM 3916 3325536 - 3325513 - R 100 -14 -3.75031 | opp_overlap 3325513, overlap 3325509 3325503 GAAAAGAGAAATGAA TTACTGCGAG CAAG CTCGCAGTAA TTTGTCGCAGTAATT TERM 3917 3325513 - 3325536 + r 100 -14 -3.88559 | opp_overlap 3325509 3325503 3325513 GAAAAGAGAAATGAA TTACTGCGAG CAAG CTCGCAGTAA TTTGTCGCAGTAATT gntU 3326890 - 3325550 - | low affinity gluconate transporter TERM 3918 3326865 - 3326837 - G 73 -3.9 -4.77036 | overlap 3326839 3326840 CTTCATGACTAAAAA CAGCAGCAG TAAAACAGACC CTACTGCTG TTAAAACAAGCGTTA gntK 3327421 - 3326894 - | gluconate kinase 1 TERM 3919 3327479 - 3327453 - R 78 -5.2 -5.01845 | opp_overlap 3327453 TACAAGAATTAAAAA TGTTACGGGTAA CTG TTATCGGTAACA TTGTCCAGCCGGACA gntR 3328498 - 3327560 - | regulator of gluconate operon TERM 3920 3328284 - 3328296 + g 76 -9.1 -3.75629 | opp_overlap 3328279 GTCTGATAACCGTGC GCGTC GGT GACGC TTTCGATTCCGCGTA TERM 3921 3328729 - 3328698 - R 83 -10 -4.10429 | overlap 3328688 3328716 AACGACGCGGCAAAA CCCCGGAAGCGTAC ATCA GCACGCGACCGGAG CGAGCGAGGAAGCCT yhhW 3329466 - 3328681 - | hypothetical protein yhhX 3330626 - 3329589 - | putative dehydrogenase TERM 3922 3330768 - 3330752 - H 100 -9.4 -5.9663 | AAAGATCAAAAAAAA GCCAGC ACCCG GCTGGC TAAGTAATACTGGAA SDY_3593 3331668 - 3331850 + | iso-IS1 ORF2 SDY_3594 3331847 - 3332062 + | iso-IS1 ORF2 TERM 3923 3332230 - 3332205 - T 93 -9.7 -4.63218 | overlap 3332207 TCTTGTTCAAGAAAA TAGCCCTCTTC CCAC GAAGAGGGCCG CTAACCTTAGTACCC TERM 3924 3332228 - 3332207 - T 100 -14.5 -3.93367 | overlap 3332205 TTGTTCAAGAAAATA GCCCTCTTC CCAC GAAGAGGGC CGCTAACCTTAGTAC ggt 3333982 - 3332237 - | gamma-glutamyltranspeptidase periplasmic precursor TERM 3925 3333485 - 3333497 + g 71 -9.1 -3.51934 | overlap 3333483 CACCACTTTGTTCAA CGGCA TAG TGCCG TATTTATCCCGCGCC TERM 3926 3333956 - 3333973 + g 90 -9.1 -4.51699 | opp_overlap 3333940 AGCAGCAATGGCCAC CCGGCGT AAAT ACGTCGG TTTTATCATCGTTAT TERM 3927 3334124 - 3334137 + G 72 -8.1 -3.95219 | overlap 3334134 GACTTCTGATTCTTA CGGCA CTCC TGCCG TTTGTCGGCTTTGCA yhhA 3334102 - 3334542 + | hypothetical protein TERM 3928 3334590 - 3334621 + T 95 -12.2 -4.17556 | gap 1, opp_overlap 3334588 3334584 CAGATGCAATCCACG CCCCAGCGCAGCAAC TCT GCCGC-GCGCTGGGG TTTATTGACGGTATA ugpE 3337175 - 3336330 - | glycerol-3-phosphate transporter membrane protein TERM 3929 3336634 - 3336618 - G 70 -5.8 -4.17762 | overlap 3336606 GATGTCGCAAAAGAA GCGCAT TGGCG ACGCGC CGTCGATCCGCGCGG TERM 3930 3336712 - 3336699 - G 70 -3.7 -4.64861 | overlap 3336700 CTGGCGGAAAAGAAA CGTCG CGGT CGCCG AGGCCATCAGCGGAA ugpA 3338059 - 3337172 - | glycerol-3-phosphate transporter permease ugpB 3339473 - 3338157 - | glycerol-3-phosphate transporter periplasmic binding protein TERM 3931 3338555 - 3338568 + g 70 -5.9 -4.15006 | CCCACAGGCTAGCCC CGCCG ATAA TGGCG TTTTGCGGTGCATCT TERM 3932 3339501 - 3339514 + r 70 -5.2 -4.46212 | opp_overlap 3339499 3339511, overlap 3339500 TTGTTGTACCGAATG CGCG AATTCA CGCG TTTTATGCTCGCGGG TERM 3933 3339703 - 3339679 - R 83 -10.8 -3.70331 | overlap 3339677 AATGCACTGAAAAGA GGCGATTAAC GGCCA GCTAATCGCC AGAACTCCTTACCAT TERM 3934 3339763 - 3339731 - R 78 -5.6 -4.89233 | gap 1, overlap 3339724 3339722 3339732 CATGAAGAGCAAAAA TGGCAGCAAATTCTG CGTC CAGT-TTTGCTGCCC GATGAGAGCTACATT TERM 3935 3339762 - 3339732 - R 72 -9.1 -3.52455 | gap 1, overlap 3339724 3339722 3339731 ATGAAGAGCAAAAAT GGCAGCAAATTCTG CGTC CAGT-TTTGCTGCC CGATGAGAGCTACAT SDY_3602 3340579 - 3339833 - | hypothetical protein TERM 3936 3340050 - 3340063 + g 79 -2.3 -5.18726 | ACTTCAAACTCACTT TCCGC ATCA GCGTA TTTTTCTTGTGCGGC TERM 3937 3340664 - 3340686 + r 79 -12 -3.14053 | opp_overlap 3340663 3340661, overlap 3340662 TATACGGACGAAGAG CCCGGCAG AACGTGG CTGCCGGG TATTCGATAATTTAC livF 3341411 - 3340698 - | leucine/isoleucine/valine transporter ATP-binding subunit livG 3342180 - 3341413 - | leucine/isoleucine/valine transporter ATP-binding subunit TERM 3938 3341690 - 3341661 - G 72 -6.3 -4.30576 | CGTCGAGCATTAAAA TCTCCGGCTGCGT CACC ATGCAGCGGGCGA TCTCCAGACGGCGCT livM 3343454 - 3342177 - | leucine/isoleucine/valine transporter permease subunit livH 3344299 - 3343451 - | high-affinity branched-chain amino acid transport system, membrane component TERM 3939 3344180 - 3344164 - G 77 -10.1 -3.68351 | opp_overlap 3344164 TGCCGATCATGTAAA CCTCGCC GTG GGCGAAG TTGATCATGCCGATA TERM 3940 3344339 - 3344317 - R 82 -11.2 -3.55622 | overlap 3344318 GGTAACCTTTCTAAA CCCGCCCGCA TTT TACGGGCGGT GGGATGATCACTTGG TERM 3941 3344338 - 3344318 - R 86 -14.7 -2.73159 | overlap 3344317 GTAACCTTTCTAAAC CCGCCCGCA TTT TACGGGCGG TGGGATGATCACTTG livK 3345456 - 3344347 - | high-affinity leucine-specific transport system; periplasmic binding protein insB 3345902 - 3345525 - | IS1 ORF2 insA 3346222 - 3345947 - | IS1 ORF1 TERM 3942 3346601 - 3346591 - H 95 -3.2 -5.88476 | AAAAGAAATAAAAAA GAGA AAG CCTC CGATTAAATTATTTC yhhK 3346657 - 3347040 + | hypothetical protein TERM 3943 3347213 - 3347231 + T 70 -10.3 -2.5785 | opp_overlap 3347204 3347208, overlap 3347212 ATATTAGCAATTTGG CGGCAAC CCAAA GTTGCCG ATTAATGATTACTTC livJ 3348400 - 3347240 - | high-affinity amino acid transport system periplasmic binding protein TERM 3944 3348071 - 3348082 + g 70 -5.8 -4.15044 | CACATATTTAATGCC GTCG TTAA CGAC TTTGTTCGCCACCGC TERM 3945 3348592 - 3348573 - R 100 -7.8 -5.75538 | opp_overlap 3348573 CCCAAAAAACAAAAA CCCCGGAC TCTC ATCCAGGG TTCTCTGCTTAATAG rpoH 3349468 - 3348614 - | RNA polymerase factor sigma-32 ftsX 3350771 - 3349713 - | cell division protein FtsX ftsE 3351432 - 3350764 - | cell division protein FtsE ftsY 3352931 - 3351435 - | cell division protein FtsY TERM 3946 3352900 - 3352922 + g 81 -10.8 -3.63968 | CCAAAGCCCAGCCAG GAAAAAAAAC CAC GTTTTTTTTC TTTCGCCATTTGCGA TERM 3947 3353103 - 3353090 - g 87 -4.5 -5.1861 | TTTATCATGAAAAAA CCGAA TCAT TCCGG CAGCGGCCAAATCCG yhhF 3353081 - 3353677 + | 16S rRNA m(2)G966-methyltransferase TERM 3948 3353858 - 3353889 + G 80 -11.7 -3.39018 | opp_overlap 3353854, overlap 3353855 CCCGCAGATGACCAC CGCCGAAAAGG TGCGGATTTT CCTTTTCGGCG TGTTTGAACTGCTGG yhhL 3353667 - 3353936 + | hypothetical protein TERM 3949 3353960 - 3353934 - T 75 -3.1 -5.22039 | overlap 3353921 TTTAAAGTTAAAAAA TAACCTTATTG TTCGC CAACAAAGCTA ACAAAGCGCGTTCCT yhhM 3354298 - 3353939 - | putative receptor TERM 3950 3354587 - 3354571 - H 71 -10.1 -3.14564 | TTACTGGCCTAGCAA GCGCCGA TGT TCGACGC CATTAGCTATCTGGT TERM 3951 3354670 - 3354684 + H 81 -3.4 -5.36441 | overlap 3354671 3354672 CGTCAACGTCTGATG TACGCC ATC GGCGCG TTTTTTCTCTCGCAC TERM 3952 3355076 - 3355095 + H 80 -12.2 -3.01984 | opp_overlap 3355072 3355071 TCTGATAAAACTTGA CTCTGGAG TCGA CTCCAGAG TGTATCCTTCGGTTA TERM 3953 3355872 - 3355851 - g 83 -10.1 -4.13654 | CGCTGAAACCAGAAA CCGCCACGC GCCT GCGTAACGG TGAGCGGGAAAAGGT zntA 3355139 - 3357337 + | zinc/cadmium/mercury/lead-transporting ATPase yhhP 3357684 - 3357439 - | cell developmental protein SirA TERM 3954 3357539 - 3357523 - G 70 -4.3 -4.52803 | overlap 3357534 CATAAAGGTACAAAA CCCAGGA ATA TCGCGGG TCGTCGCCGGATCGT TERM 3955 3358357 - 3358375 + G 95 -6.6 -5.1963 | overlap 3358358 CACACTGTTCGGTAA CGTCAGCG ACA CGCTGGCC TTTTTCTTCATTGCC TERM 3956 3358358 - 3358374 + G 77 -10.1 -3.70694 | overlap 3358357 ACACTGTTCGGTAAC GTCAGCG ACA CGCTGGC CTTTTTCTTCATTGC yhhQ 3357905 - 3358570 + | hypothetical protein SDY_3623 3358643 - 3359200 + | hypothetical protein TERM 3957 3359218 - 3359245 + T 100 -13.4 -5.52384 | opp_overlap 3359213 3359218 TTTAAGATGATGAGA CGGCCTCAGGGA CGTG TTCCGGAGGCCG TTTTTTTAATCGCCA TERM 3958 3359245 - 3359218 - T 74 -11.2 -2.86432 | opp_overlap 3359218, overlap 3359213 TTTAAGATGATGAGA CGGCCTCAGGGA CGTG TTCCGGAGGCCG TTTTTTTAATCGCCA yhhS 3360367 - 3359204 - | hypothetical protein TERM 3959 3360966 - 3360950 - H 72 -5.1 -4.60041 | ATGGACTCGGAAAAA GTGGTTA CCT TCACCAC AGCGCTAATGACCGG SDY_3626 3361513 - 3361908 + | iso-IS1 ORF2 TERM 3960 3362255 - 3362281 + T 89 -10.9 -4.05788 | opp_overlap 3362255 CTCCTGAGCAGGCAA TGGCCACCGTT TATCT AACAGTGGCCA TTTGATTTGAGGAAA TERM 3961 3362281 - 3362255 - T 82 -13.1 -3.09516 | opp_overlap 3362255 CTCCTGAGCAGGCAA TGGCCACCGTT TATCT AACAGTGGCCA TTTGATTTGAGGAAA insB 3362740 - 3362363 - | IS1 ORF2 insA 3363060 - 3362785 - | IS1 ORF1 TERM 3962 3363236 - 3363226 - g 72 -6.8 -4.25283 | ACTGGCGTATGAAAA TGCG GTG CGCA AAATGCCGGAGTGGC SDY_3629 3363131 - 3364360 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 3963 3364587 - 3364555 - g 82 -11.3 -3.53224 | opp_overlap 3364545, overlap 3364537 3364576 CATTTGCGCCGGAAA CGCCGCTATGGTTCA ACT TAAGCCATAGCGGTG ACGATATCGCCCTGC yhhU 3364362 - 3364949 + | holo-(acyl carrier protein) synthase 2 nikA 3365060 - 3366634 + | periplasmic binding protein for nickel TERM 3964 3366680 - 3366700 + G 90 -7.5 -4.93296 | overlap 3366683 TGCTGATCCCGATGG TGCTCGCCG CCT CGGTGATCA TTTTTCTGATGCTGC nikB 3366634 - 3367578 + | nickel transporter permease NikB nikC 3367575 - 3368408 + | nickel transporter permease NikC nikD 3368408 - 3369172 + | nickel transporter ATP-binding protein TERM 3965 3369253 - 3369234 - g 88 -12.2 -3.6692 | overlap 3369232 GTTTAGCGGAAAACA TCAGCACC AGGC GGTGCTGA ATAACGTTTCCCTGA nikE 3369169 - 3369975 + | nickel transporter ATP-binding protein yhhG 3369981 - 3370382 + | nickel responsive regulator TERM 3966 3370825 - 3370812 - f 74 -3.8 -5.02476 | opp_overlap 3370812 ACATTTGTCAAAAAA GAGG GTGATG CCTC TAATTAGTTGAATCT SDY_3638 3371171 - 3371566 + | iso-IS1 ORF2 SDY_3639 3372417 - 3372022 - | iso-IS1 ORF2 SDY_3640 3372639 - 3372875 + | hypothetical protein SDY_3641 3372900 - 3373373 + | putative phosphotransferase system enzyme subunit SDY_3642 3373370 - 3373651 + | putative phosphotransferase system enzyme IIB TERM 3967 3373785 - 3373806 + G 72 -8.7 -3.75532 | overlap 3373784 3373781 ATATTGGGATTTGGC CCGACGGTA ATGT TGCCGTTGG TGTTATTTATTCTTG SDY_3643 3373728 - 3374111 + | hypothetical protein insA 3374220 - 3374495 + | IS1 ORF1 insB 3374540 - 3374917 + | IS1 ORF2 SDY_3646 3374999 - 3375532 + | hypothetical protein TERM 3968 3376188 - 3376174 - g 72 -7.8 -3.92542 | TCCATCCTGAAAGAA CGCTCG CGG CAAGCG ATTGAGAACCCGCTT SDY_3647 3375535 - 3376257 + | hypothetical protein TERM 3969 3376760 - 3376771 + G 72 -5.8 -4.42653 | overlap 3376747 AGCCGTGGACGGATT TCCG TGGA CGGA TTTTATCGGTCCAAT SDY_3648 3376590 - 3376925 + | hypothetical protein glpD 3378624 - 3377119 - | glycerol-3-phosphate dehydrogenase TERM 3970 3377708 - 3377718 + g 81 -4.6 -5.0538 | CAGACGATATCGTCA CGGC TAA GCTG TTTTTTAAAGTGCGC TERM 3971 3378674 - 3378659 - H 71 -7.6 -3.95219 | opp_overlap 3378659 GTTAAAGCTCATAAA TGTTCG TTAT CGAACA TATTAGCAAAGAATC glpE 3378814 - 3379140 + | thiosulfate sulfurtransferase TERM 3972 3379211 - 3379229 + G 72 -5.8 -4.33621 | overlap 3379207 3379213 TACCTCTTTTGCTAA CCCCCGCG TGG CGCAGGCG TTTGTTGATTACATG TERM 3973 3379331 - 3379372 + G 74 -10.1 -3.48276 | opp_overlap 3379358 3379359, overlap 3379332 GGCCGAGCGCGTACG GGCGGAGCTGGCGCGTTTT CTCG AAAACCCGGCAGATCCGCG TTATCTGGCGGCAAG TERM 3974 3379332 - 3379371 + G 84 -13.6 -2.68823 | opp_overlap 3379358 3379359, overlap 3379331 GCCGAGCGCGTACGG GCGGAGCTGGCGCGTTTT CTCG AAAACCCGGCAGATCCGC GTTATCTGGCGGCAA glpG 3379185 - 3380015 + | intramembrane serine protease GlpG TERM 3975 3380301 - 3380268 - g 70 -6.1 -4.17914 | gap 2 GACCGAAGAAAAAGA GAGGA-TTGC-CCGC AAAGTG GCGGAGCAAATCCCC AACGGCTCGACGCTG glpR 3380032 - 3380790 + | DNA-binding transcriptional repressor GlpR yhgKJ 3381782 - 3382813 + | RNA 3'-terminal-phosphate cyclase SDY_3656 3383348 - 3382863 - | hypothetical protein SDY_3657 3383623 - 3383339 - | hypothetical protein malT 3386383 - 3383684 - | transcriptional regulator MalT TERM 3976 3386074 - 3386086 + g 72 -5.5 -4.58663 | overlap 3386075 AGAGTGACGTCAGGC TGGCA TAT TGCCG TTTTTGCGCCATCGT TERM 3977 3386572 - 3386555 - H 72 -6.3 -4.21676 | gap 1, overlap 3386556 3386558 ACAACTCACCTAAAA CGACGCTG ATC CAGCGT-G AATACTGGTTTCCCT TERM 3978 3387811 - 3387795 - g 72 -5.1 -4.57073 | TACTGCCGGTAAAAA GCTGC GCTTGAT GCAGC AATACTTCCAGTGTG TERM 3979 3388478 - 3388462 - g 70 -3.7 -4.62872 | ATCAATCTGGAAAAA TTCGC TGATGAT GCGAA ATTCCGTCAGCAATA malP 3386995 - 3389388 + | maltodextrin phosphorylase TERM 3980 3389553 - 3389527 - g 85 -13.1 -3.18582 | gap 1, overlap 3389501 3389500 3389542 3389543 GACGCGATGCATCAA CG-TACCGCCAC GAAA GTGGCGGTAACG CCAGTCCCGAATGTC TERM 3981 3390445 - 3390459 + G 74 -10 -3.56092 | overlap 3390442 CTCTGGTTGCAGTGG CTGGCT TAC AGCCAG TTTGCCGCCTGCTGG TERM 3982 3391383 - 3391371 - g 74 -3.3 -4.93296 | opp_overlap 3391371 3391375 TTACCAGTATAAAAA CTGGC GAC GCAAG CTTTCCGCAACGCTT malQ 3389398 - 3391482 + | 4-alpha-glucanotransferase TERM 3983 3391488 - 3391523 + T 73 -9.8 -3.32963 | gap 1, overlap 3391490 3391491 GAAGAAGTAGAGTGC GGTTGA-TGCCGGATGC GAT GCATCCGGCAGTCAGTG TTATCAAATCACCAT TERM 3984 3391490 - 3391521 + T 90 -14.6 -3.23393 | gap 1, overlap 3391488 3391491 AGAAGTAGAGTGCGG TTGA-TGCCGGATGC GAT GCATCCGGCAGTCAG TGTTATCAAATCACC TERM 3985 3391491 - 3391520 + T 90 -15.9 -2.53822 | gap 1, overlap 3391490 3391488 GAAGTAGAGTGCGGT TGA-TGCCGGATGC GAT GCATCCGGCAGTCA GTGTTATCAAATCAC gntT 3392843 - 3391527 - | high-affinity transport of gluconate/gluconate permease yhgI 3393779 - 3393204 - | putative DNA uptake protein TERM 3986 3394684 - 3394709 + G 72 -8.9 -3.75665 | TGCACCTTGTTGACC TGCCCGGCTTC GGGC GTAGCCGGGGA TTTGGTGCGATGTCA TERM 3987 3395242 - 3395255 + G 70 -5.2 -4.44046 | opp_overlap 3395242 ACATCTTCGCCAAAG CGGC TCATGC GCCG TTTATTTCGCATCCG bioH 3394545 - 3395315 + | carboxylesterase BioH yhgA 3396220 - 3395342 - | hypothetical protein TERM 3988 3396193 - 3396209 + g 71 -2.9 -4.77036 | overlap 3396196 TGAACAGCGCATCGT GTGGGGT GGA ACTCTGC TTTTTGCTCATGGCG TERM 3989 3396332 - 3396344 + r 80 -6.3 -4.82901 | GAACTTACGTCGCGC TGCAA GAA TTGCA TTTTTATGGAAAGCC TERM 3990 3396396 - 3396372 - R 100 -12.2 -5.08824 | gap 1, opp_overlap 3396372 GCCGCACGCAAAAAA GCCCGG-ATGC AAAC GCATACCGGGC TTTTCAAAACAGGCG TERM 3991 3396372 - 3396396 + r 95 -12.2 -4.07568 | gap 1, opp_overlap 3396372 GCCGCACGCAAAAAA GCCCGG-ATGC AAAC GCATACCGGGC TTTTCAAAACAGGCG yhgG 3396659 - 3396423 - | hypothetical protein feoB 3398980 - 3396659 - | ferrous iron transport protein B TERM 3992 3397350 - 3397368 + g 77 -8.2 -4.11216 | overlap 3397340 GAAGCCAGCGCCGAG TCGTTGAT GTT ATCGACGA TTTTCCCGCTCAACG TERM 3993 3398133 - 3398122 - G 74 -5.8 -4.53036 | TCACAAAGAGGAAAA TCGG CAGA CCGA GGAAACGGTTGAGCA feoA 3399224 - 3398997 - | ferrous iron transport protein A TERM 3994 3399583 - 3399559 - R 87 -10.7 -4.15044 | opp_overlap 3399560 3399561, overlap 3399561 TGGCTGTGGAATAAA TATGCCGGAGA TAT TCTCCGGCACT TTTATGTCAGACAAG TERM 3995 3399560 - 3399582 + r 100 -12 -4.52589 | opp_overlap 3399559 3399561, overlap 3399561 GGCTGTGGAATAAAT ATGCCGGAGA TAT TCTCCGGCAC TTTTATGTCAGACAA TERM 3996 3399581 - 3399561 - R 100 -15.5 -3.6761 | opp_overlap 3399560 3399561, overlap 3399559 GCTGTGGAATAAATA TGCCGGAGA TAT TCTCCGGCA CTTTTATGTCAGACA TERM 3997 3399561 - 3399581 + r 100 -15.5 -3.31232 | opp_overlap 3399561 3399559, overlap 3399560 GCTGTGGAATAAATA TGCCGGAGA TAT TCTCCGGCA CTTTTATGTCAGACA yhgF 3401903 - 3399681 - | hypothetical protein TERM 3998 3400109 - 3400130 + g 84 -7.9 -4.62904 | gap 1, opp_overlap 3400108 3400107, overlap 3400109 GAGCGGTTTTAAATT CC-GGACGCG GAT CGCGACCCGG TTTTTCCAGCTCTTT TERM 3999 3400685 - 3400673 - G 70 -6.9 -4.03234 | GGCGGGCGATAGAAA CCGCG CCA CGCAG CGAAACGTCGAGATC greB 3402575 - 3402099 - | transcription elongation factor GreB TERM 4000 3403283 - 3403297 + G 77 -10 -3.66803 | opp_overlap 3403270 3403273, overlap 3403280 GACGAGCCGATGCCG CTCACC AGC GGTGAG TTTGCGGTATTGAAG ompR 3402803 - 3403522 + | osmolarity response regulator envZ 3403519 - 3404871 + | osmolarity sensor protein TERM 4001 3404898 - 3404877 - T 100 -13 -4.46835 | opp_overlap 3404877 AGAAGGGTAAATAAA CGGGAGGC GAAGGT GCCTCCCG TTTTGCTTTCTATAA TERM 4002 3404877 - 3404898 + T 100 -13.7 -4.65153 | opp_overlap 3404877 AGAAGGGTAAATAAA CGGGAGGCG AAGG TGCCTCCCG TTTTGCTTTCTATAA pckA 3406569 - 3404947 - | phosphoenolpyruvate carboxykinase TERM 4003 3404976 - 3404995 + g 73 -11.4 -2.59797 | overlap 3404975 3404974 CAGCCGCTACCAGCG CGGCACCC GCAG GGGTGTCG GTGTATTTATCGAAG TERM 4004 3406707 - 3406686 - H 75 -3 -5.26918 | overlap 3406687 ATATTTGACAAAAAA CTCCGTGA TTCCTG TCACGAAA CGGTTGCTATTATCG TERM 4005 3407083 - 3407095 + G 70 -5.5 -4.34771 | overlap 3407084 TGTTTATGGCGTGCC TGCGA CCG TCGCG TTTTCATCCGTTTTA TERM 4006 3407329 - 3407310 - g 70 -5.6 -4.38927 | opp_overlap 3407322 3407326 CGTGGATACAACAAA GCCTTCGC ATCC GCAATGGC AGTAGCCGCTATCGC yhgE 3406949 - 3408673 + | putative transport TERM 4007 3408727 - 3408704 - T 100 -16.8 -4.12188 | opp_overlap 3408698 3408706 GTATTAGTCGTAAAA TCCGGCAGAG CCCT CTCTGCCGGA CGGTGATGCTTCCAA SDY_3675 3408958 - 3408743 - | iso-IS1 ORF2 SDY_3676 3409137 - 3408955 - | iso-IS1 ORF2 hslO 3410387 - 3409509 - | Hsp33-like chaperonin TERM 4008 3410060 - 3410085 + g 93 -10.4 -4.44974 | opp_overlap 3410059, overlap 3410057 TCACCACGTAACCAT TGCCGACCAG TGTTTT CAGGTCGGCA TTTTCTGGAATTTCG yrfH 3410813 - 3410412 - | ribosome-associated heat shock protein Hsp15 TERM 4009 3410768 - 3410758 - G 75 -4.6 -4.82901 | CGGGTTTTATAAAAA CGGG CAG CCCA TAGCCATTTATCCAG yrfG 3411537 - 3410824 - | putative phosphatase TERM 4010 3411515 - 3411556 + g 73 -9.5 -3.67775 | gap 1, opp_overlap 3411518, overlap 3411517 ATCTCCAGAGTGAAG CA-ATTTGCGCGACAGGGTA GCA TAACCTGCCGCGCAAACGTG TTATTCGATAAGGCT TERM 4011 3411517 - 3411553 + g 76 -12.3 -2.64872 | opp_overlap 3411518, overlap 3411515 CTCCAGAGTGAAGCA ATTTGCGCGACAGGGTA GCA TAACCTGCCGCGCAAAC GTGTTATTCGATAAG TERM 4012 3411552 - 3411518 - G 100 -18 -3.39142 | opp_overlap 3411517 3411515 TCCAGAGTGAAGCAA TTTGCGCGACAGGGTA GCA TAACCTGCCGCGCAAA CGTGTTATTCGATAA yrfF 3413692 - 3411557 - | putative dehydrogenase nudE 3414012 - 3414572 + | ADP-ribose diphosphatase NudE TERM 4013 3414735 - 3414710 - T 72 -10.5 -2.83522 | opp_overlap 3414716, overlap 3414716 ACTTTGTCAGCAAAC TGAAAAGGCGC CGAA GCGCCTTTTTA ATCAGAACAATTCCT TERM 4014 3414729 - 3414716 - T 90 -9.5 -4.37711 | opp_overlap 3414716, overlap 3414710 TCAGCAAACTGAAAA GGCGC CGAA GCGCC TTTTTAATCAGAACA TERM 4015 3414716 - 3414729 + T 93 -9.5 -4.72272 | opp_overlap 3414716 3414710 TCAGCAAACTGAAAA GGCGC CGAA GCGCC TTTTTAATCAGAACA mrcA 3417313 - 3414737 - | peptidoglycan synthetase TERM 4016 3417389 - 3417373 - H 79 -12.3 -2.92091 | AGACGCATTGATATA CCCGTCA GAG TGACGGG TGATAAGGAGATCAT SDY_3683 3417409 - 3417711 + | hypothetical protein yrfD 3417742 - 3418188 + | hypothetical protein yrfC 3418188 - 3418727 + | hypothetical protein yrfB 3418711 - 3419091 + | hypothetical protein yrfA 3419101 - 3419544 + | hypothetical protein TERM 4017 3420528 - 3420542 + F 74 -5.6 -4.59773 | AAAGCGGAGAAACGT TGGCGC TGG GCGGCA TTTTTACCCGTAAAA TERM 4018 3420836 - 3420852 + F 83 -6.5 -5.06451 | ATGATTTATCATTCA GGCGGCA TTT TGCTGTC TTTTTTACGCTAATC TERM 4019 3421031 - 3421057 + F 83 -10 -4.05446 | GGTTTCAGTTCATGT CCTGCGGCGCTC TCT GAGCGAAGCGGG TTTATCATTAACGAA TERM 4020 3421307 - 3421289 - g 72 -4.5 -4.64676 | CGATCGCGAAGAAAA GGTCATC AATGA GTTGACC GAGAAACAGGGTATT aroK 3421095 - 3421616 + | shikimate kinase I aroB 3421673 - 3422761 + | 3-dehydroquinate synthase TERM 4021 3422777 - 3422795 + F 77 -11 -3.15621 | opp_overlap 3422774, overlap 3422775 CAACAAGAAAGGTCA GGCCGCTT ATC AAGCGGTC TATTAGCTTCAGGTT damX 3422853 - 3424130 + | hypothetical protein TERM 4022 3424141 - 3424168 + F 85 -14.2 -3.05596 | opp_overlap 3424135 3424136 AGTAATCAAGGTTAT CTCCCGCAATGG TTTA TCGTTGCGGGAG TTGCCTGAAGCGCTG TERM 4023 3424353 - 3424374 + G 100 -13.1 -4.60073 | overlap 3424347 TTTTGTAGGTGCCGG GTCGGTGTT TCTC AACACCGAC TTTTCTCGTTATATC TERM 4024 3424546 - 3424566 + G 82 -3.1 -5.19879 | overlap 3424546 3424548 AACAAAAGCCAGGAT CCGTTCCGT CGG GCGGTACTG TTTTTATATTTGAAC TERM 4025 3424677 - 3424657 - g 79 -2.5 -5.24129 | GGCCGCTACAAAAAA CCCTATTTC CCG GAAGCAGAG TTGTATCATTTCGCT TERM 4026 3425060 - 3425016 - g 70 -3.7 -4.70659 | opp_overlap 3425022 3425026, overlap 3425026 CGGCACACGTAAAAA GGTG-GACGAACTGCTGGCTT TGTAC AAACCAGGAGT-CGTTTCACC CGCGAAAAAATAATT dam 3424237 - 3425073 + | DNA adenine methylase TERM 4027 3425086 - 3425074 - f 78 -6.3 -4.61482 | CCCGCGAAAAAATAA TTCTC AAG GAGAA GCGGATGAAACAGTA rpe 3425091 - 3425768 + | ribulose-phosphate 3-epimerase gph 3425761 - 3426519 + | phosphoglycolate phosphatase trpS 3426512 - 3427516 + | tryptophanyl-tRNA synthetase TERM 4028 3427646 - 3427659 + F 100 -9.5 -5.33785 | opp_overlap 3427646 GTCATCACTCTGAAA CCGGG GAAA CCCGG TTTTTTATCCTCATT TERM 4029 3427659 - 3427646 - f 75 -9.5 -3.58343 | opp_overlap 3427646 GTCATCACTCTGAAA CCGGG GAAA CCCGG TTTTTTATCCTCATT TERM 4030 3427833 - 3427808 - f 75 -3.1 -5.14965 | overlap 3427811 3427812 ACGTTTATCAAAAAA GAAGGCGTCGT TATC ACGACGCTGGC CCGTTATTTGTTGGG TERM 4031 3427830 - 3427811 - f 82 -7.8 -4.67552 | overlap 3427808 3427812 TTTATCAAAAAAGAA GGCGTCGT TATC ACGACGCT GGCCCGTTATTTGTT TERM 4032 3427829 - 3427812 - f 79 -11.3 -3.39447 | overlap 3427811 3427808 TTATCAAAAAAGAAG GCGTCGT TATC ACGACGC TGGCCCGTTATTTGT yhfZ 3428003 - 3428689 + | hypothetical protein SDY_3698 3428847 - 3429212 + | insertion sequence 2 OrfA protein SDY_3699 3429170 - 3430075 + | insertion element IS2 transposase InsD TERM 4033 3430464 - 3430450 - f 82 -2.9 -5.54264 | opp_overlap 3430438, overlap 3430438 3430433 AAATATTCAAAAAAA TGAAT ATTTA ATTCA AGGAACAGAAACGAG TERM 4034 3430523 - 3430509 - f 76 -9.2 -3.72984 | opp_overlap 3430508, overlap 3430500 GTAGAAGCATTGAAA CGCCAG AAC CCGGCG CTGATTTCCGCCGCA yhfW 3431652 - 3432878 + | putative mutase yhfV 3432875 - 3433753 + | putative hydrolase SDY_3704 3434700 - 3434305 - | iso-IS1 ORF2 SDY_3705 3434922 - 3435623 + | putative transcriptional regulator yiaI 3435867 - 3436340 + | hypothetical protein TERM 4035 3436341 - 3436378 + T 83 -13.5 -3.25088 | opp_overlap 3436343, overlap 3436335 3436343 CAGCAGCCTGTTTGA AACGTTTTTCCGGCGTT TCTC AACGCCGGAATAGCGTA TTAATGACTTTCAGC TERM 4036 3436376 - 3436343 - T 93 -13.9 -3.53444 | opp_overlap 3436343 3436341 3436335 GCAGCCTGTTTGAAA CGTTTTTCCGGCGTT TCTC AACGCCGGAATAGCG TATTAATGACTTTCA TERM 4037 3436343 - 3436376 + T 100 -16.1 -3.18776 | opp_overlap 3436343, overlap 3436341 3436335 GCAGCCTGTTTGAAA CGTTTTTCCGGCGTT TCTC AACGCCGGAATAGCG TATTAATGACTTTCA avtA 3437632 - 3436379 - | valine--pyruvate transaminase TERM 4038 3436540 - 3436552 + g 71 -9.1 -3.54741 | GCCCCGGCACCATCA GCACG CCG CGTGC TTTCAGGCGCTGATA TERM 4039 3437885 - 3437867 - H 72 -6.6 -4.2461 | overlap 3437863 ATGCTCACGAACAAA GCCGTAGC CCT GCTTCAGC GAAAGTGTCGTTTGT TERM 4040 3439912 - 3439901 - H 76 -4.4 -5.06223 | ATAAACCAAACAAAA CTCA TCCC TGAG CGGTAAGTCCACAGG TERM 4041 3440403 - 3440393 - g 71 -2.4 -4.92777 | overlap 3440386 AACACCAAGGAAAAA GGCG TTT CTCC GGACCGTAATGCCTT bax 3440160 - 3440984 + | hypothetical protein TERM 4042 3440999 - 3441028 + T 100 -17.3 -4.26903 | ATTGTATTTCCTCGA GCCTTATCCGACT TGTC GGTCGGATAAGGC TTTTGATCGCATCAG xylR 3442270 - 3441092 - | putative regulator of xyl operon TERM 4043 3441923 - 3441903 - G 74 -3.2 -4.98436 | GGAAGACCATAAAAA GCAAAGCG GTTAA CGCCTTTC TCTTTTAAATGCAAA TERM 4044 3441959 - 3441941 - G 81 -6 -4.81249 | opp_overlap 3441933 3441941 TTTTAAATGCAAAAA TGCGCT TTCAACC AGCGCA TAGTTATCGGTGGCA TERM 4045 3442331 - 3442300 - R 100 -16.8 -4.7078 | opp_overlap 3442306 3442307 TGAATCATGCAAAAA CTCAAAACCGGTAA TACG TTACCGGCTTTGAG AAAATTTTGGTGATG SDY_3711 3442710 - 3442354 - | iso-IS1 ORF2 SDY_3713 3443310 - 3443089 - | IS600 ORF1 SDY_3712 3442945 - 3443190 + | hypothetical protein TERM 4046 3443405 - 3443380 - fH 72 -9.1 -3.61398 | opp_overlap 3443380 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT TERM 4047 3443380 - 3443405 + FH 100 -9.8 -5.61596 | opp_overlap 3443380 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT SDY_3714 3443395 - 3443982 + | IS4 orf SDY_3715 3443924 - 3444697 + | IS4 orf TERM 4048 3444750 - 3444721 - f 89 -9.3 -4.59109 | overlap 3444723 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACGGCCTTATGGAC TERM 4049 3444748 - 3444723 - f 100 -16.3 -3.90762 | overlap 3444721 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACGGCCTTATGG TERM 4050 3444916 - 3444937 + F 74 -8.7 -3.91196 | opp_overlap 3444907 GCAAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 4051 3447402 - 3447414 + F 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 4052 3448173 - 3448187 + F 72 -5.7 -4.41177 | overlap 3448164 3448161 GTATCAGTCTGCTTC GCAAG ACTGC CTTGC TTTTCACTTTCTATC TERM 4053 3449995 - 3450009 + F 76 -4.2 -5.0916 | opp_overlap 3449995, overlap 3449984 3449996 CTCTTTCAGAGTCAA CCCTGA ATT TCAGGA TTTTTCTCTTCAACC TERM 4054 3450282 - 3450264 - f 73 -2.4 -5.20783 | opp_overlap 3450272, overlap 3450266 ATTGAAAGAGAAAAA TTCGCG AGCGTTG CGCAAA CGTTTTCGTTACAAT TERM 4055 3450327 - 3450368 + F 100 -20.5 -2.96216 | opp_overlap 3450316 3450314, overlap 3450316 3450329 AGGATGCCCCGTTAG GGGCGTTAGCTGAGTTTTT TGCG AAAAATTCAGCTAACGCTC TCTGTAATAGTCAAA TERM 4056 3450329 - 3450366 + F 100 -19.5 -3.03443 | opp_overlap 3450316 3450314, overlap 3450316 3450327 GATGCCCCGTTAGGG GCGTTAGCTGAGTTTTT TGCG AAAAATTCAGCTAACGC TCTCTGTAATAGTCA purH 3450399 - 3451988 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase purD 3452000 - 3453289 + | phosphoribosylamine--glycine ligase hydG 3454611 - 3453286 - | transcriptional regulatory protein ZraR TERM 4057 3453335 - 3453362 + g 90 -10.4 -4.4009 | opp_overlap 3453335 GTGATCCCTAACTGA CGGGCGGCTTCG GTTT TGTTGCCGCCCG TTTTCTCCAGTGCCG TERM 4058 3453937 - 3453966 + g 81 -7.1 -4.72272 | overlap 3453938 3453939 AACAAAGTGCCCTTC CCGGCGTTTATCG GCTC CGGTAAACGCCCC TTTTTCGTGACCGAA TERM 4059 3453938 - 3453965 + g 78 -10.6 -3.43042 | overlap 3453937 3453939 ACAAAGTGCCCTTCC CGGCGTTTATCG GCTC CGGTAAACGCCC CTTTTTCGTGACCGA TERM 4060 3453939 - 3453964 + g 84 -14.1 -2.65504 | overlap 3453938 3453937 CAAAGTGCCCTTCCC GGCGTTTATCG GCTC CGGTAAACGCC CCTTTTTCGTGACCG TERM 4061 3454374 - 3454386 + g 70 -6.2 -4.17491 | CAGTCATAATCAGCA CCGG AATTG CCGG TTTTAACGCTTTGAT hydH 3455984 - 3454608 - | sensor protein ZraS TERM 4062 3456119 - 3456092 - H 84 -7.8 -4.81083 | gap 1, opp_overlap 3456092 TTCAATGAGTAAAAA TGACTCG-CTACC CGC AGCAGGCGAGTCA TTTTTACTCGTTTAT TERM 4063 3456092 - 3456119 + H 80 -6.2 -4.85267 | opp_overlap 3456092 TTCAATGAGTAAAAA TGACTCGCTACC CGCA GCAGGCGAGTCA TTTTTACTCGTTTAT zraP 3456222 - 3456641 + | zinc resistance protein yjaH 3457338 - 3456643 - | hypothetical protein TERM 4064 3457305 - 3457320 + g 72 -10.4 -3.35639 | opp_overlap 3457305 GCCAGAAAGACAAAA GGGGTG AAAC CACCCC TTCGTTAAAACTGTT TERM 4065 3457320 - 3457305 - G 100 -10.4 -4.84918 | opp_overlap 3457305 GCCAGAAAGACAAAA GGGGTG AAAC CACCCC TTCGTTAAAACTGTT hupA 3457623 - 3457351 - | transcriptional regulator HU subunit alpha yjaG 3458400 - 3457810 - | hypothetical protein nfi 3459114 - 3458443 - | endonuclease V hemE 3460188 - 3459124 - | uroporphyrinogen decarboxylase TERM 4066 3460021 - 3460033 + g 74 -6.2 -4.56597 | CAAGGTCACTTCACA CGCC AGCTC GGCG TTTTTGCACAGCGAC TERM 4067 3460070 - 3460055 - G 74 -6 -4.56358 | opp_overlap 3460056, overlap 3460056 CACAGCGACATAAAA TCGCCC GCCT GGGCGC GCGTGGCTTTATATT nudC 3461001 - 3460228 - | NADH pyrophosphatase TERM 4068 3460944 - 3460980 + g 75 -4.3 -4.78149 | opp_overlap 3460943, overlap 3460947 3460949 TCGGCAACCATAATT TTTGTTCATGGCTGACG ACC CACCAGCCGTGATCTAA TTTTTCAATTATACG yjaE 3461096 - 3461572 + | anti-RNA polymerase sigma 70 factor TERM 4069 3463353 - 3463330 - g 70 -6 -4.20367 | CTGCCTAATAAAGAA GATGTTAAGC AGGG GCTTATCACC TATAAGATTGCCGCC thiC 3461806 - 3463701 + | thiamine biosynthesis protein ThiC thiE 3463701 - 3464336 + | thiamine-phosphate pyrophosphorylase thiF 3464329 - 3465084 + | thiamin biosynthesis, thiazole moiety TERM 4070 3465220 - 3465242 + G 72 -4.9 -4.70626 | overlap 3465238 GACGCAACATATCGT GCAGGAT GGCGACCAG ATCCTGC TTTTTCAGGTTATTG thiS 3465068 - 3465268 + | sulfur carrier protein ThiS thiG 3465270 - 3466040 + | thiazole synthase thiH 3466037 - 3467170 + | thiamine biosynthesis protein ThiH TERM 4071 3467440 - 3467423 - f 70 -4.9 -4.41353 | opp_overlap 3467423 3467426, overlap 3467417 TGATAGAGACGAAAA TAAGAAC ACAT GTTCTCA TCTTCCAGGATGCAG TERM 4072 3467553 - 3467536 - f 70 -9.9 -3.01791 | ATGGCGTTCTGAATA CCAGAGA TAAT TCTCTGG CGAAACCCACCTTAA TERM 4073 3467554 - 3467579 + F 100 -14.1 -4.17762 | opp_overlap 3467559, overlap 3467559 GAGATAATTCTCTGG CGAAACCCACC TTAA GGTGGGTTTTG TTATTTTGAGGGCTG TERM 4074 3467574 - 3467559 - f 79 -10.4 -3.53343 | opp_overlap 3467559 3467554 AATTCTCTGGCGAAA CCCACC TTAA GGTGGG TTTTGTTATTTTGAG TERM 4075 3467559 - 3467574 + F 100 -10.4 -5.093 | opp_overlap 3467559, overlap 3467554 AATTCTCTGGCGAAA CCCACC TTAA GGTGGG TTTTGTTATTTTGAG SDY_3738 3468139 - 3468534 + | iso-IS1 ORF2 TERM 4076 3469066 - 3469079 + T 100 -9.5 -4.8384 | opp_overlap 3469066 CCCCCCATAAAAAAA CCCGC CGAA GCGGG TTTTTACGTTATTTG TERM 4077 3469079 - 3469066 - T 100 -9.5 -5.60993 | opp_overlap 3469066 CCCCCCATAAAAAAA CCCGC CGAA GCGGG TTTTTACGTTATTTG rpoC 3473329 - 3469106 - | DNA-directed RNA polymerase subunit beta' TERM 4078 3471494 - 3471478 - G 78 -7.9 -4.40561 | GGTCCGCAAAAATAA CGGTCGG TTT CAGACCG AGAATGCGGTAGCAG TERM 4079 3471989 - 3471973 - G 72 -7.9 -3.87373 | opp_overlap 3471972 3471969 3471979 TATATGCCGCACAAA CCAGCGG GTG CAGCTGG ATAGCTTTACCTTCG TERM 4080 3473387 - 3473358 - R 70 -9.2 -3.4252 | opp_overlap 3473358, overlap 3473359 TCGGAGTTAGCACAA TCCGCTGCCGGG TTTTAC CCCGACAGCAGT GACCTGTTTGAGCGA TERM 4081 3473386 - 3473359 - R 78 -12.7 -2.65298 | opp_overlap 3473358, overlap 3473358 CGGAGTTAGCACAAT CCGCTGCCGGG TTTTAC CCCGACAGCAG TGACCTGTTTGAGCG rpoB 3477434 - 3473406 - | DNA-directed RNA polymerase subunit beta TERM 4082 3473504 - 3473514 + g 74 -3.2 -4.91459 | overlap 3473511 CCATCTGATGGTTGC CGTC CAC GATG TTTTTATACATCTTA TERM 4083 3474392 - 3474408 + g 86 -6.5 -5.10033 | overlap 3474393 CGTCATACTGCTCAG CCAGCTG TTC CAGCTGA TTTTGTTTCTCTTCG TERM 4084 3474393 - 3474407 + g 77 -10 -3.64393 | overlap 3474392 GTCATACTGCTCAGC CAGCTG TTC CAGCTG ATTTTGTTTCTCTTC TERM 4085 3476618 - 3476639 + g 81 -6.5 -4.87665 | gap 1 CCAGCTGGCGAATGT GGCGCGCAGT GAT ACGGCG-GCC TTTTTCTACGTACAC TERM 4086 3477703 - 3477678 - R 100 -17.7 -4.64766 | opp_overlap 3477671 3477667 3477666, overlap 3477698 CTTACAGCGCAAAAA GGCTGGTGACT AAAA AGTCACCAGCC ATCAGCCTGATTTCT rplL 3478108 - 3477743 - | 50S ribosomal protein L7/L12 rplJ 3478672 - 3478175 - | 50S ribosomal protein L10 rplA 3479789 - 3479085 - | 50S ribosomal protein L1 rplK 3480221 - 3479793 - | 50S ribosomal protein L11 TERM 4087 3479897 - 3479920 + g 77 -8.2 -4.13343 | gap 1, overlap 3479915 CTTTGGTCTGCGCGA TTTCCTGCAGC TGA GC-GCGGGAAA TTTTACCCACTTTGT TERM 4088 3480309 - 3480280 - R 81 -3.7 -5.36441 | gap 1, overlap 3480282 3480307 CCGTGATATAAAAAA TCG-TTTTACGGGC AAG ACCCATAAAAACAA AAGGCGCGAAATTGT TERM 4089 3480345 - 3480307 - R 100 -16.9 -4.91459 | opp_overlap 3480312, overlap 3480280 3480312 CAAGACCCATAAAAA CAAAAGGCGCGAAATTG TATTC CAATCTCGCGCCTTGTG CAACGATTAAATCGC TERM 4090 3480312 - 3480340 + r 86 -13.2 -3.30159 | opp_overlap 3480307 3480312 CCCATAAAAACAAAA GGCGCGAAATTG TATTC CAATCTCGCGCC TTGTGCAACGATTAA TERM 4091 3480340 - 3480312 - R 100 -15.4 -5.35224 | opp_overlap 3480312, overlap 3480307 CCCATAAAAACAAAA GGCGCGAAATTG TATTC CAATCTCGCGCC TTGTGCAACGATTAA TERM 4092 3480345 - 3480363 + r 75 -3 -5.1675 | AATCTCGCGCCTTGT GCAACGAT TAA ATCGCCGC TTTTTTGATCGCTGG nusG 3480925 - 3480380 - | transcription antitermination protein NusG secE 3481310 - 3480927 - | preprotein translocase subunit SecE TERM 4093 3481018 - 3481004 - G 73 -11.4 -2.65264 | GGATCAGTGACATTA CTGCGG TAA CCGCAG CCACAATCAGCGTGG TERM 4094 3481107 - 3481118 + g 70 -4.4 -4.5442 | opp_overlap 3481107 ACGGGCAAAAGCAAC GGTA GCTT TACC TTTTGTCGTTAACAG TERM 4095 3481476 - 3481517 + r 88 -14.5 -3.0792 | opp_overlap 3481477 3481488, overlap 3481488 AGGTTCTGGTACGAA AGCGTGCAAAAAGGGCATC AAAT GATGCCCTTTTAGTGCGCA TTGCGTCAAATGTTA TERM 4096 3481516 - 3481477 - R 100 -13.6 -3.72576 | opp_overlap 3481476 3481488, overlap 3481488 GGTTCTGGTACGAAA GCGTGCAAAAAGGGCATC AAAT GATGCCCTTTTAGTGCGC ATTGCGTCAAATGTT TERM 4097 3481488 - 3481505 + r 91 -11.3 -4.2679 | opp_overlap 3481477 3481488, overlap 3481476 GAAAGCGTGCAAAAA GGGCATC AAAT GATGCCC TTTTAGTGCGCATTG TERM 4098 3481505 - 3481488 - R 95 -11.3 -4.60924 | opp_overlap 3481488 3481476, overlap 3481477 GAAAGCGTGCAAAAA GGGCATC AAAT GATGCCC TTTTAGTGCGCATTG tufB 3482724 - 3481540 - | elongation factor Tu TERM 4099 3482678 - 3482694 + g 70 -4.4 -4.4715 | gap 1, opp_overlap 3482678 ACGTGGCCGATAGTA CCG-ACG TTAA CGTGCGG TTTTGTACGTTCAAA TERM 4100 3483040 - 3483052 + H 73 -7.7 -4.15222 | opp_overlap 3483036 TCTGCACTGAATATC GAGAG AAG CTCTC TTTATTCGAGCCGGT SDY_3753 3483300 - 3483455 + | hypothetical protein coaA 3483642 - 3484592 + | pantothenate kinase TERM 4101 3484599 - 3484616 + T 100 -12.7 -4.80417 | CGCAAATAATTTGCA GGGGAGC TAAT GCTCCCC TTTCTTATTTTTCTG birA 3485586 - 3484621 - | biotin--protein ligase TERM 4102 3485218 - 3485197 - G 74 -8.7 -3.90766 | opp_overlap 3485196, overlap 3485210 CATCGACAAATATAA GTTTGCGCC AAAA GGCGAAAAC CATTTCCGACCCCGG murB 3486611 - 3485583 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 4103 3486710 - 3486731 + r 79 -11.5 -3.45776 | opp_overlap 3486710 GTAGAAACGCAAAAA GGCCCAGTC TTCC GACCGGGCC TTCTGCTAAATTTGA TERM 4104 3486731 - 3486710 - R 100 -13.7 -4.84529 | opp_overlap 3486710 GTAGAAACGCAAAAA GGCCCAGTC TTCC GACCGGGCC TTCTGCTAAATTTGA TERM 4105 3486878 - 3486899 + r 74 -8.7 -3.91196 | opp_overlap 3486869 GCAAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 4106 3489364 - 3489376 + r 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 4107 3490135 - 3490149 + r 72 -5.7 -4.41177 | overlap 3490126 3490123 GTATCAGTCTGCTTC GCAAG ACTGC CTTGC TTTTCACTTTCTATC murI 3492978 - 3492121 - | glutamate racemase TERM 4108 3492915 - 3492880 - GR 95 -14 -3.41125 | gap 1, opp_overlap 3492877, overlap 3492901 GTCATAGACCGACAA CCCACCGACGCCGGAGT CAA ACACCAGCA-CGGTGGG ACGTGGTTCAGAAGG btuB 3494767 - 3492923 - | vitamin B12/cobalamin outer membrane transporter TERM 4109 3494304 - 3494322 + gH 70 -9.6 -3.01712 | ATTTCCGTTCCGGGT TCATCGCG CGT CGTGATGA TATTCACCACCCCGC TERM 4110 3496172 - 3496145 - g 74 -9.8 -3.45839 | opp_overlap 3496145 3496143 ATCTGGAAACATTAA GCCAGACGCACA AGGT CGAACGTCTGGC TCTGTTTGATCAGTT trmA 3495136 - 3496236 + | tRNA (uracil-5-)-methyltransferase TERM 4111 3496270 - 3496239 - T 100 -15.2 -4.41494 | opp_overlap 3496234 3496243, overlap 3496240 3496241 GACCGCGAAGTAAAA CCCATGCCGGATGC GCCA GCATCCGGCATGAT TCCGATTACTCAGCA TERM 4112 3496269 - 3496240 - T 100 -18.7 -3.24414 | opp_overlap 3496234 3496243, overlap 3496239 3496241 ACCGCGAAGTAAAAC CCATGCCGGATGC GCCA GCATCCGGCATGA TTCCGATTACTCAGC TERM 4113 3496268 - 3496241 - T 100 -20 -2.54166 | opp_overlap 3496234 3496243, overlap 3496240 3496239 CCGCGAAGTAAAACC CATGCCGGATGC GCCA GCATCCGGCATG ATTCCGATTACTCAG TERM 4114 3496243 - 3496266 + T 100 -16.8 -2.75957 | opp_overlap 3496241 3496240 3496239, overlap 3496234 GCGAAGTAAAACCCA TGCCGGATGC GCCA GCATCCGGCA TGATTCCGATTACTC yijD 3496635 - 3496276 - | hypothetical protein TERM 4115 3496440 - 3496427 - G 73 -3.7 -4.77567 | ACGCCGAGAATAAAA CAGGC AGCT GCCAG ACCCGGCAAGCCTAC TERM 4116 3496655 - 3496669 + r 73 -4.2 -4.79752 | CGTCCTTCACATTTC CCGGAA TAA TTGCGG TTTTCTCTTGTTCAC yijC 3497339 - 3496635 - | DNA-binding transcriptional repressor FabR TERM 4117 3497237 - 3497251 + g 100 -2.7 -6.01725 | opp_overlap 3497189 TAAATGCGGCTTCCA CCAGC GAACG GCGGG TTTTTTCTTTTTGTT insA 3497979 - 3498206 + | IS1 ORF1 insB 3498300 - 3498677 + | IS1 ORF2 TERM 4118 3498773 - 3498784 + T 85 -5.8 -5.4505 | AGAAAACGCGCTTTC GCTG GTAG CAGC TTTTTTATTGCGCAC TERM 4119 3498886 - 3498875 - T 88 -5.8 -5.46657 | overlap 3498863 CACGCCAATAAAAAA TGGC ACAC GCCA GCCCCATTCTGCCAT TERM 4120 3499429 - 3499442 + T 70 -2.3 -5.07486 | opp_overlap 3499426, overlap 3499426 3499426 AGGCAAAAATCACCC GCCTG CCGC TGGGC TTTTTCTTCACACTC SDY_3769 3499786 - 3499526 - | hypothetical protein SDY_3770 3500691 - 3499801 - | putative hippuricase SDY_3771 3501056 - 3500778 - | iso-IS1 ORF2 yiiX 3502286 - 3501678 - | putative peptidoglycan peptidase TERM 4121 3502334 - 3502312 - R 75 -2.6 -5.14563 | gap 1, opp_overlap 3502310 3502312 CCTTGTATGAAAAAA GCGGC-TGG TTAACT CCGCGCCGC TCTTTTCCGCTTTAG metJ 3502663 - 3502346 - | transcriptional repressor protein MetJ TERM 4122 3503240 - 3503296 + G 76 -7.4 -4.24413 | gap 2, opp_overlap 3503279, overlap 3503243 3503244 3503274 GCGCCACACGACTGC TACGGCGGTAGCTATCGCCTGTTCGACA GTC TGGCGAA-ACGCGGTTGCTATCGC-GTG TTGTTTGTTGATCAA TERM 4123 3503244 - 3503293 + G 73 -11.5 -2.81784 | gap 1, opp_overlap 3503279, overlap 3503243 3503240 3503274 CACACGACTGCTACG GCGGTAGCTATCGCCTGTTCGACA GTC TGGCGAA-ACGCGGTTGCTATCGC GTGTTGTTTGTTGAT TERM 4124 3503274 - 3503299 + G 70 -6.1 -4.24342 | opp_overlap 3503279, overlap 3503244 3503243 3503240 TGTTCGACAGTCTGG CGAAACGCGGT TGCT ATCGCGTGTTG TTTGTTGATCAAGGC metB 3502940 - 3504100 + | cystathionine gamma-synthase TERM 4125 3505892 - 3505880 - g 74 -3.3 -5.00884 | overlap 3505883 ACGCCTTTGAAAAAA CAGGG CGT CACTG GCTGTACAATGCCAC metL 3504103 - 3506535 + | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 4126 3506686 - 3506708 + F 100 -12 -5.42605 | AGTTAATATTTGCAG TCCGGTTTGC TTT GCATACCGGA TTTTCTTTTTCTTAC metF 3506884 - 3507774 + | 5,10-methylenetetrahydrofolate reductase TERM 4127 3507849 - 3507887 + F 71 -10.4 -2.60392 | overlap 3507846 3507851 3507860 GCTGCCTCGAAATGA GGGCGGGAAAATAAGGTT ATC AGCCTTGTTTTCTCCCTC ATTACTTGAAGGATA TERM 4128 3509613 - 3509601 - f 71 -10.5 -2.73007 | opp_overlap 3509600, overlap 3509600 AAGAGTCTGGTAAAG CCGCC GCT GGCGG ATATCATCGTGCTGG TERM 4129 3510225 - 3510257 + F 100 -25.1 -4.41616 | CTGTAATCTGACCTT CTTCAGCGACTGCCT TTC AGGCAGTCGCTGAAG TTTCTTTACCGGCGT TERM 4130 3510705 - 3510716 + G 77 -7.2 -4.53398 | TTCGCGATTCTGATT GCCG CTTT CGGC TTATTTTTGGTGTTG yijE 3510276 - 3511214 + | hypothetical protein yijF 3511858 - 3511241 - | hypothetical protein TERM 4131 3512090 - 3512131 + r 75 -9.6 -3.65201 | gap 1, opp_overlap 3512102, overlap 3512095 3512102 AGCGCATCAGGCAAT TTTGCGTTCAAACTCCCGG ACAAG CCGGGAGTTTGGA-GTAGG TTATTCCCACTCTTG TERM 4132 3512095 - 3512127 + r 78 -12.8 -2.65808 | opp_overlap 3512102, overlap 3512090 3512102 ATCAGGCAATTTTGC GTTCAAACTCCCGG ACAAG CCGGGAGTTTGGAG TAGGTTATTCCCACT TERM 4133 3512120 - 3512102 - R 86 -11.7 -3.53343 | opp_overlap 3512095 3512090 3512102 AATTTTGCGTTCAAA CTCCCGG ACAAG CCGGGAG TTTGGAGTAGGTTAT TERM 4134 3512102 - 3512120 + r 86 -11.7 -3.62418 | opp_overlap 3512102, overlap 3512095 3512090 AATTTTGCGTTCAAA CTCCCGG ACAAG CCGGGAG TTTGGAGTAGGTTAT gldA 3513235 - 3512132 - | glycerol dehydrogenase talC 3513908 - 3513246 - | fructose-6-phosphate aldolase TERM 4135 3513423 - 3513411 - G 71 -9.1 -3.53091 | ACGCGGCGTTTTAAA GCTGG CCG CCAGC ACCATGCTTTCTGGA ptsA 3516055 - 3513920 - | PEP-protein phosphotransferase system enzyme I TERM 4136 3514236 - 3514213 - G 72 -5.2 -4.53303 | overlap 3514215 GACCGGTAGAGAAAA CGGACTCGCG CGCC CACAAGTCGG CTTCCAGTTTACACG TERM 4137 3514910 - 3514889 - G 80 -11.7 -3.35679 | overlap 3514907 TTCTTTCACCCATAA GATCTCTTC CATT GAAGAGATC ATCGGGATCATGATT TERM 4138 3516265 - 3516276 + G 72 -7.2 -4.21098 | opp_overlap 3516265, overlap 3516257 TGTCGGTGCCAATCA GCGC AAGG GCGC TTTTGGCGTTGCTCT yijI 3516057 - 3516521 + | hypothetical protein TERM 4139 3516591 - 3516601 + F 70 -2.4 -4.93898 | TATCGCAAGTTATGA GGCG GAT CGCA TTTTTGTACTGATAT frwC 3516730 - 3517809 + | putative fructose-like permease EIIC subunit 2 frwB 3517824 - 3518144 + | putative fructose-like phosphotransferase EIIB subunit 2 TERM 4140 3518153 - 3518170 + F 74 -10.5 -3.27525 | CGCTTAAGTTCTTAT CCCGCTC GCAA GGGCGGG TTCGCTTTCCCACAG TERM 4141 3518582 - 3518558 - gf 81 -6.6 -4.59773 | gap 1, opp_overlap 3518535 CCGTACTGGGAAAAA CGTTCGATGAA AGAT TTCATC-AACG GGCAGATGACGGATG TERM 4142 3518926 - 3518941 + GF 77 -9 -3.8512 | opp_overlap 3518915 3518914 TAAGCCGCAGACGTT CTGGCA GGCG TGCCAG TTATTCTGGTACATG pflD 3518195 - 3520492 + | putative formate acetyltransferase 2 TERM 4143 3520502 - 3520527 + GF 70 -6.7 -4.14392 | opp_overlap 3520504, overlap 3520503 CTGTAACGTTGTGGA AACGCGCCGCA ATGA TGTGGCGCGCA TTTTCAACATTCAGC TERM 4144 3520503 - 3520526 + GF 73 -10.2 -3.08314 | opp_overlap 3520504, overlap 3520502 TGTAACGTTGTGGAA ACGCGCCGCA ATGA TGTGGCGCGC ATTTTCAACATTCAG TERM 4145 3520525 - 3520504 - gf 82 -11.5 -3.54459 | opp_overlap 3520503 3520502 GTAACGTTGTGGAAA CGCGCCGCA ATGA TGTGGCGCG CATTTTCAACATTCA TERM 4146 3520713 - 3520727 + GF 72 -9.2 -3.55801 | opp_overlap 3520713, overlap 3520714 CGTGATGCGGATGAA TGCCCC TCC GGGGCG TTTGAACGGATTGGT TERM 4147 3520714 - 3520726 + GF 71 -10.5 -2.73159 | opp_overlap 3520713, overlap 3520713 GTGATGCGGATGAAT GCCCC TCC GGGGC GTTTGAACGGATTGG pflC 3520458 - 3521336 + | pyruvate formate lyase II activase frwD 3521338 - 3521679 + | putative fructose-like phosphotransferase EIIB subunit 3 yijO 3522517 - 3521666 - | putative ARAC-type regulatory protein TERM 4148 3522170 - 3522194 + g 74 -6.3 -4.52347 | opp_overlap 3522153, overlap 3522159 3522166 TATGCGTGGGCCGCG TCGGGCGACGT GTT GCTTCGCCAGA TTTTGATATTGTTTG TERM 4149 3522315 - 3522297 - G 81 -9.6 -4.09685 | overlap 3522270 TGCCATTGTGGAAAA TTCCAGCC ACC AGCTGGAA CGTACAGCACATCGC TERM 4150 3522591 - 3522571 - R 91 -7.6 -5.1861 | gap 1, overlap 3522555 GGCATTATTAAAAAA GGCCAC-CT GAAA AGTGTGGCC TGATGGGAGTTCGAT TERM 4151 3522653 - 3522625 - R 73 -11 -2.63479 | overlap 3522615 3522614 3522639 3522641 AACATTGCGACAGTA TCGCATCCGGCA AATAG CGCCAGACGCGA TACAAAGGTCATTTA yijP 3524399 - 3522666 - | hypothetical protein TERM 4152 3524347 - 3524331 - G 75 -4.3 -4.84033 | opp_overlap 3524341, overlap 3524334 AGAGAAAAACCAAAA GTAGAGC AGT GCCCAAC CCAGGGCTTTCCAGC TERM 4153 3524542 - 3524563 + r 82 -11.5 -3.53012 | opp_overlap 3524542 AAGTATTTCAGAAAA CCCTCGCGC AAAA GCACGAGGG TTTGCAGGAGAGGAA TERM 4154 3524563 - 3524542 - R 100 -13.7 -4.41206 | opp_overlap 3524542 AAGTATTTCAGAAAA CCCTCGCGC AAAA GCACGAGGG TTTGCAGGAGAGGAA ppc 3527232 - 3524581 - | phosphoenolpyruvate carboxylase TERM 4155 3527577 - 3527545 - R 70 -9.8 -3.02511 | gap 1, opp_overlap 3527556, overlap 3527506 TGGAGTTTGGCAACA GTGCCGGATGCGGCG CGAG CGCCTTATCCGGC-C TACGGTTGGGCATCG TERM 4156 3527608 - 3527639 + r 77 -11.6 -2.77013 | opp_overlap 3527617 3527619 3527629, overlap 3527607 TTTGAGTCACTGTAG GTCGGATAAGATGC GCAA GCATCGCATCCGAC ATTATTGCGGCACTG argE 3528858 - 3527707 - | acetylornithine deacetylase TERM 4157 3527786 - 3527803 + g 72 -9.9 -3.33696 | opp_overlap 3527782 GTTTCCAGATATTCA TCAGGCT GATG AGCCTGA TTAATTGAGCCAGGC TERM 4158 3528936 - 3528918 - H 73 -2.4 -5.14163 | ATTTATGAATAAAAA TACACTAA CGT TGAGCGTA ATAAAACCCACCAGC argC 3529012 - 3530016 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 4159 3530296 - 3530283 - g 71 -2.3 -4.90525 | GAACGGCAAATAAAA CCCTG CTGG CATGG GCGAAGAAACATCAG argB 3530027 - 3530800 + | acetylglutamate kinase argH 3530861 - 3532234 + | argininosuccinate lyase TERM 4160 3532259 - 3532277 + F 82 -5.9 -5.24129 | TATGTACAAATTTGA GCTTGGC TTATC GCCGGGC TTTTTTATGGCAAAA TERM 4161 3532315 - 3532297 - f 100 -11 -5.78622 | TTATGGCAAAAAAAA GCGGATCC TGG AGATCCGC AAAAGTTCACGTTGG oxyR 3532501 - 3533418 + | DNA-binding transcriptional regulator OxyR udhA 3534801 - 3533401 - | soluble pyridine nucleotide transhydrogenase SDY_3798 3535163 - 3534948 - | hypothetical protein TERM 4162 3534984 - 3534995 + g 79 -2.2 -5.1861 | gap 1 TGATAGTTTTATCTT GC-CG AAG CGTGC TTTTTTGGTGATGCC SDY_3799 3535358 - 3535753 + | iso-IS1 ORF2 rhsB 3539369 - 3535728 - | rhsB protein in rhs element TERM 4163 3538573 - 3538555 - G 75 -6.7 -4.30844 | gap 1, opp_overlap 3538569, overlap 3538557 AGGGTATCAGGAAAA GC-GGACG GTTC CGTCCCGC CGGAAGAGGCCTGCT TERM 4164 3539509 - 3539496 - R 100 -9.5 -5.65177 | opp_overlap 3539496 ACAGGCACAAAAAAA GCGCC GTGC GGCGC TTTTTTCGGAAATCC TERM 4165 3539496 - 3539509 + r 100 -9.5 -5.02074 | opp_overlap 3539496 ACAGGCACAAAAAAA GCGCC GTGC GGCGC TTTTTTCGGAAATCC rpmE 3539741 - 3539529 - | 50S ribosomal protein L31 TERM 4166 3541087 - 3541059 - g 76 -7.9 -4.29153 | CCAGCAGAAAAAATA CCGCCTGCTGCGC CTG ACGCGTCGGGCGG GGAATGCGCGTCCGA TERM 4167 3541648 - 3541661 + G 74 -8.1 -4.09243 | TTTTCTGCCGATTTT CGCTC GGCA GAGCG TTTTGCCCAGCTATA priA 3539944 - 3542142 + | primosome assembly protein PriA TERM 4168 3542940 - 3542884 - g 75 -11.4 -3.06696 | gap 1, opp_overlap 3542884 CCGGTCCCGAAGAGA TGCCGCTGTGTCGCTACCGCCTGCAAG GTTA CGTTCAGGCGCT-GCGTCGCTGCGGCA TTATGGTTGATCCGC TERM 4169 3542884 - 3542940 + G 95 -13.6 -3.54029 | gap 1, opp_overlap 3542884 CCGGTCCCGAAGAGA TGCCGCTGTGTCGCTACCGCCTGCAAG GTTA CGTTCAGGCGCT-GCGTCGCTGCGGCA TTATGGTTGATCCGC cytR 3542298 - 3543323 + | DNA-binding transcriptional regulator CytR TERM 4170 3543862 - 3543846 - g 70 -10.1 -3.23853 | overlap 3543844 3543858 TCCGTGGAATGAACA GACGCCG GAA CAGCGTC AGCAAACGCTACAGC TERM 4171 3543958 - 3543947 - g 70 -5.8 -4.21974 | overlap 3543914 GTACGACTGAACAAA GCTG GCAG CAGC AGACGCGTACGTCGC ftsN 3543415 - 3544374 + | essential cell division protein TERM 4172 3544412 - 3544431 + F 73 -7.8 -4.05991 | opp_overlap 3544403, overlap 3544424 3544425 TATAATTGCATTATG CACCGTAC TTTT GTACGGGG TTTGTACTCTGTATT hslV 3544467 - 3544997 + | ATP-dependent protease peptidase subunit hslU 3545007 - 3546338 + | ATP-dependent protease ATP-binding subunit TERM 4173 3546369 - 3546386 + F 100 -9.1 -5.06816 | opp_overlap 3546381, overlap 3546381 TTCATCATTGTTTGA TGGGGCT GAAA GGCCCCA TTTTTATTGGCGCGT menA 3546405 - 3547331 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase menG 3547424 - 3547909 + | ribonuclease activity regulator protein RraA TERM 4174 3547946 - 3547930 - T 89 -10.9 -4.09685 | opp_overlap 3547930 TGCCATGCGTTAAAA GGGGAAT TAA ATTCCCC TTTTTGGTGATGCTT TERM 4175 3547930 - 3547946 + T 100 -10.9 -4.7871 | opp_overlap 3547930 TGCCATGCGTTAAAA GGGGAAT TAA ATTCCCC TTTTTGGTGATGCTT SDY_3809 3548361 - 3547966 - | iso-IS1 ORF2 SDY_3810 3548759 - 3549010 + | hypothetical protein insA 3549146 - 3549421 + | IS1 ORF1 insB 3549466 - 3549843 + | IS1 ORF2 SDY_3813 3550322 - 3550624 + | IS600 ORF1 SDY_3814 3550765 - 3551478 + | IS600 ORF2 SDY_3815 3551506 - 3551802 + | hypothetical protein TERM 4176 3551828 - 3551807 - T 95 -7.9 -5.28481 | overlap 3551810 CAGTGAAGTAAAAAA TAAGGCGCC TTGC GGCGCCTCT GCGTGGAAGAGATTA TERM 4177 3551825 - 3551810 - T 100 -11.8 -4.72473 | overlap 3551807 TGAAGTAAAAAATAA GGCGCC TTGC GGCGCC TCTGCGTGGAAGAGA yiiU 3552086 - 3551841 - | hypothetical protein TERM 4178 3551960 - 3551976 + g 74 -2.9 -5.01858 | GCTGGGCATTTTGAA CTTCCTG CGA CAGTGAG TTGTTTTTTTCTTTC glpF 3552512 - 3553357 + | facilitated diffusion of glycerol TERM 4179 3554860 - 3554847 - g 74 -3.1 -5.02074 | gap 1, overlap 3554856 GCAGGCTGGAAAAAA GCG-GT CAA ACGCGC GATGGCGTGGGAAGA glpK 3553380 - 3554888 + | glycerol kinase TERM 4180 3555053 - 3555030 - f 79 -10.2 -3.5944 | overlap 3555031 ACGCAGACTCTGAAA CCGTGCGGGG GCAA CCCCGCACAC ATCAATAATCCCACC TERM 4181 3555052 - 3555031 - f 83 -13.7 -2.75343 | overlap 3555030 CGCAGACTCTGAAAC CGTGCGGGG GCAA CCCCGCACA CATCAATAATCCCAC TERM 4182 3555225 - 3555207 - g 95 -9.5 -4.83169 | opp_overlap 3555217 3555218 ACGCGGCGATAAAAA CACCGCG GACGG CGCGGCG GTAAACGCCATGCGT glpX 3555118 - 3556128 + | fructose 1,6-bisphosphatase II TERM 4183 3556149 - 3556170 + F 100 -13.1 -5.7946 | TTGATCGATTGAGCC TTCCAGTCC TTCG GGACTGGAA TTTTTTTGTTCGGAG TERM 4184 3556501 - 3556515 + G 72 -6.4 -4.33417 | GTGCAGGTGGTTAGC GAAGCT GCT GGCTTC TTTGTTCTGGATGAA TERM 4185 3556947 - 3556903 - g 82 -11.3 -3.55548 | overlap 3556905 CAACAGTTGCTGAAA GAGACCCGGCAGATGACGAAA CAT TTACGTCGCCGACCGGGTCAC ATGACAGCGGAGCAT TERM 4186 3556945 - 3556905 - g 83 -12.5 -3.35224 | overlap 3556903 ACAGTTGCTGAAAGA GACCCGGCAGATGACGAAA CAT TTACGTCGCCGACCGGGTC ACATGACAGCGGAGC fpr 3556225 - 3556971 + | ferredoxin-NADP reductase yiiT 3557404 - 3556976 - | universal stress protein UspD TERM 4187 3557139 - 3557155 + g 70 -3.6 -4.66537 | overlap 3557141 3557146 GTTTCCGGCATTTCT CCGCGT TCAAT ACGCAG TTTTGTCTTCGGCCA TERM 4188 3557212 - 3557234 + g 76 -10.8 -3.41024 | opp_overlap 3557226, overlap 3557210 3557227 GCTTGTTATCCGACT TATTCTTCAA CAA TTGAAGAATA TCTTCTGTTGCAGGG yiiS 3557730 - 3557407 - | hypothetical protein TERM 4189 3557914 - 3557867 - R 93 -16 -2.84566 | gap 1, overlap 3557864 AAGAGTTCAGAAGGA TTTTCCGGGTATTGTCATTTGCA TCG TGGAAATAACAAT-CCCGGAAAA AAATAGCAGTAAGAG SDY_3823 3558386 - 3557991 - | iso-IS1 ORF2 yiiR 3559156 - 3558725 - | hypothetical protein yiiQ 3559257 - 3559856 + | hypothetical protein tpiA 3559964 - 3560731 + | triosephosphate isomerase TERM 4190 3560741 - 3560763 + T 90 -13.5 -3.6187 | overlap 3560737 GCTTAAGTCTGACAG GTGCCGGAT TTCAT ATCCGGCAC TTACTTTCCTTAACT insB 3561675 - 3561298 - | IS1 ORF2 insA 3561995 - 3561720 - | IS1 ORF1 TERM 4191 3562402 - 3562380 - R 93 -6.9 -5.72622 | opp_overlap 3562380 GTGACAAATAAAAAA CCCGGTCGC GAGAA ACCACCGGG TTTGATAATTATCCT sbp 3563414 - 3562425 - | sulfate transporter subunit TERM 4192 3563547 - 3563531 - R 89 -9.4 -4.56597 | opp_overlap 3563528 3563531 GTTGGGGGTTAAAAA GGCGGA AGAAA TCCGCC TCATATTGCTGACAA TERM 4193 3563651 - 3563677 + r 78 -5 -4.96646 | overlap 3563652 TGCAGAATTCACGTA GGCCTGATAAGC GAA GCGCATCAGGCA TTTTTGCTTCTGTCA pfkA 3564695 - 3563733 - | 6-phosphofructokinase TERM 4194 3564039 - 3564050 + g 93 -5.8 -5.22039 | overlap 3564031 3564036 ATGTTCGGTAATCGC CACG ATCG CGTG TTTTTTACCTTTCGC TERM 4195 3564407 - 3564419 + g 77 -3.3 -5.15117 | CGATAACCACCAGCG CGTCG ATA CCACG TTTTTTCAGGTTTTC TERM 4196 3564637 - 3564667 + g 76 -11.1 -3.28712 | opp_overlap 3564626, overlap 3564626 ACAACCCCGCGAATT GCGGCGTTCATGC CTGGC GCATCACCGCCGC TTGTCAACACACCGA fieF 3565778 - 3564876 - | ferrous iron efflux protein F TERM 4197 3565254 - 3565240 - G 72 -10 -3.30106 | overlap 3565218 3565238 3565236 CCCAATGCAAACAGA GCATCG GCG CGATGC CAGCCGTACCAGGAC TERM 4198 3565884 - 3565868 - R 100 -12.3 -5.9873 | TGAGGATAAAAAAAA CCCCACA TCA TGTGGGG GAAGACAGGGATGGT cpxP 3566426 - 3565926 - | periplasmic repressor CpxP cpxR 3566576 - 3567274 + | DNA-binding transcriptional regulator CpxR TERM 4199 3567893 - 3567855 - g 75 -4.7 -4.81249 | gap 2 GCGTAAACTGAAAAA TGCTGCCGATGAAGTTGCC CAG GGAAACTT-A-CGCCAGCA CCCGGAACTGGAAGC TERM 4200 3567987 - 3567997 + G 70 -6.8 -4.05389 | overlap 3567970 CATGATGACCTCTCA GCAG CGT CTGC TTTCTGATATCTCTC TERM 4201 3568188 - 3568173 - g 79 -4.6 -4.94902 | overlap 3568175 TAATCAGCAGAAAAA CGCGCT GGTA AGCGAG ACATTGAAAGCTAAC cpxA 3567271 - 3568644 + | two-component sensor protein TERM 4202 3568674 - 3568688 + T 73 -10 -3.30124 | CAGGATGCCTGATGC GACGCT GAT AGCGTC TTATCAGGCCTACAC yiiM 3569386 - 3568712 - | hypothetical protein TERM 4203 3569511 - 3569488 - R 95 -13.2 -3.94853 | GAACTTAATAGCAAA CCGGACGAAC GTTA GTTCATCCGG CGGTGGGGATTAAGG kdgT 3570521 - 3569535 - | 2-keto-3-deoxygluconate permease TERM 4204 3570482 - 3570493 + g 72 -5.8 -4.42386 | opp_overlap 3570467 3570465 GCGGGACGAGCATCA TCCC CCCC GGGA TTTTCTCAATCGAGC TERM 4205 3570644 - 3570658 + r 71 -3.6 -4.86001 | CAAAACCACATCAAT TGAAAC GAT GTTTTA TTTTTATAGGATCAT TERM 4206 3570701 - 3570727 + r 78 -5 -5.06451 | opp_overlap 3570705, overlap 3570705 GAAATTGATCACAAA AAAACCACCGCC ATT GGCGATGGTTCA TTTTTTAAGCTGATA TERM 4207 3570723 - 3570705 - R 100 -12.4 -5.67063 | opp_overlap 3570705 3570701 TTGATCACAAAAAAA CCACCGCC ATT GGCGATGG TTCATTTTTTAAGCT TERM 4208 3570705 - 3570723 + r 84 -10.2 -3.93769 | opp_overlap 3570705, overlap 3570701 TTGATCACAAAAAAA CCACCGCC ATT GGCGATGG TTCATTTTTTAAGCT sodA 3571401 - 3570781 - | superoxide dismutase rhaT 3571686 - 3572720 + | rhamnose-proton symporter TERM 4209 3572762 - 3572737 - T 70 -10.5 -2.52464 | opp_overlap 3572734 3572733, overlap 3572742 CTTTCTGCGAATTGA GATGACGCC ACTGGCTG GGCGTCATC CCGGTTTCCCGGGTA rhaR 3573655 - 3572717 - | transcriptional activator RhaR rhaS 3574475 - 3573639 - | transcriptional activator RhaS TERM 4210 3574218 - 3574203 - G 72 -7.6 -3.89215 | GGCGAGAAACTGAAA TCGATC CGGC GATCGA TACAGCACATTGGTC rhaB 3574763 - 3575926 + | rhamnulokinase TERM 4211 3577259 - 3577310 + G 78 -9.2 -3.85817 | gap 1 CTGAAAGGCTGGGAC GAGCG-CAACGGCGGCAACCTGACG CTG CGTCTGGATGACGCCGATATCGCGC TTTATCACGACAACT rhaD 3577181 - 3578005 + | rhamnulose-1-phosphate aldolase yiiL 3578015 - 3578329 + | hypothetical protein TERM 4212 3578365 - 3578333 - T 73 -11.2 -2.71144 | opp_overlap 3578333 TACCTGCCTTAATGA GTTGCGGTGCCGGA AAATA TCCAGCACCGCGCC TTCATCAGAAGAAGT TERM 4213 3578333 - 3578365 + T 77 -11.2 -3.14211 | opp_overlap 3578333 TACCTGCCTTAATGA GTTGCGGTGCCGGA AAATA TCCAGCACCGCGCC TTCATCAGAAGAAGT SDY_3846 3579047 - 3578709 - | iso-IS1 ORF2 TERM 4214 3580132 - 3580120 - R 75 -2.7 -5.14949 | AATAAAATAATAAAA TTCAC GAA ATGAA TAAGTCCTGCAATTT TERM 4215 3580167 - 3580133 - R 93 -13.8 -3.5782 | opp_overlap 3580133, overlap 3580136 AATTCACGAAATGAA TAAGTCCTGCAATTTA ATA TATATCGCAGGACTTA TTTTAATTAATTACT TERM 4216 3580133 - 3580167 + r 100 -11.6 -4.50193 | opp_overlap 3580133 3580136 AATTCACGAAATGAA TAAGTCCTGCAATTTA ATA TATATCGCAGGACTTA TTTTAATTAATTACT TERM 4217 3580164 - 3580136 - R 87 -11.1 -3.91541 | opp_overlap 3580133, overlap 3580133 TCACGAAATGAATAA GTCCTGCAATTTA ATA TATATCGCAGGAC TTATTTTAATTAATT fdhD 3581007 - 3580174 - | formate dehydrogenase accessory protein TERM 4218 3581657 - 3581647 - g 77 -8.2 -4.10657 | CTACATTGCGCAAAA CGCC GAA GGCG TGACTGTTAACCGCT TERM 4219 3583482 - 3583447 - g 85 -13.2 -3.17392 | GACGCCGGAAGGCAA CCAGACGGCGCGTCGT GATA ACGCCGATCCGTCTGG CCTCGGTAACACGCT fdoG 3581201 - 3584251 + | formate dehydrogenase-O, major subunit TERM 4220 3584449 - 3584474 + G 73 -11.3 -2.71791 | gap 1, opp_overlap 3584449, overlap 3584448 3584451 TACCGTCGGCAATAA CATTGGGG-TGT ACG ACAACCCCAATG ATTTAAGCGCCAAAT TERM 4221 3584474 - 3584449 - g 85 -11.3 -3.61715 | gap 1, opp_overlap 3584448 3584449 3584451 TACCGTCGGCAATAA CATTGGGG-TGT ACG ACAACCCCAATG ATTTAAGCGCCAAAT TERM 4222 3584855 - 3584844 - g 70 -5.8 -4.28018 | overlap 3584845 AAGAGTCGATGAAAA CGCT GGCG AGCG AGCGCGTGGCGGAGC fdoH 3584264 - 3585166 + | formate dehydrogenase-O, iron-sulfur subunit fdoI 3585163 - 3585798 + | formate dehydrogenase-O subunit gamma TERM 4223 3585866 - 3585847 - g 70 -10.7 -2.71325 | opp_overlap 3585847, overlap 3585844 CGAGCGAGAAACGTA CGGCGGA TATGAT TCCGCCG TTATTATTCCCTCGG TERM 4224 3585847 - 3585866 + G 86 -10.7 -3.97307 | opp_overlap 3585847 3585844 CGAGCGAGAAACGTA CGGCGGA TATGAT TCCGCCG TTATTATTCCCTCGG fdhE 3585795 - 3586724 + | formate dehydrogenase accessory protein FdhE TERM 4225 3586995 - 3586966 - T 77 -10.7 -3.30124 | overlap 3586992 TTGTAGGCCGGATAA GGCGTTCACGCCG CATC CGGCATGAACAAC GCGCACGTTGTCAGC insB 3587421 - 3587044 - | IS1 ORF2 insA 3587741 - 3587466 - | IS1 ORF1 yiiD 3588908 - 3587919 - | putative acetyltransferase yihZ 3589342 - 3588905 - | D-tyrosyl-tRNA deacylase rbn 3590211 - 3589339 - | ribonuclease BN yihX 3590804 - 3590205 - | phosphatase SDY_3859 3591868 - 3591155 - | IS600 ORF2 SDY_3860 3592809 - 3592288 - | IS911 ORF2 TERM 4226 3592696 - 3592707 + gr 77 -5.8 -4.63218 | opp_overlap 3592692 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SDY_3861 3593128 - 3592778 - | IS911 ORF2 TERM 4227 3593049 - 3593069 + gr 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_3862 3593457 - 3593155 - | IS911 ORF1 SDY_3863 3594352 - 3593621 - | hypothetical protein SDY_3864 3594727 - 3594518 - | hypothetical protein SDY_3865 3594922 - 3595104 + | iso-IS1 ORF2 SDY_3866 3595101 - 3595316 + | iso-IS1 ORF2 SDY_3867 3596030 - 3595326 - | shikimate transporter TERM 4228 3595513 - 3595485 - G 76 -7.4 -4.26832 | TAAGAAGAAAGGAAA CGCGAACAGGAC ACAAA ATCCTGCTCCCG ACAAATACAGACTTT TERM 4229 3595951 - 3595937 - G 73 -4.2 -4.86133 | overlap 3595939 TACAGAGAGCAAAAA TACCGG TTG CCAGCA TAATACCCACAGACG insA 3596178 - 3596453 + | IS1 ORF1 insB 3596498 - 3596875 + | IS1 ORF2 TERM 4230 3597557 - 3597586 + T 89 -9.3 -4.59109 | overlap 3597550 3597559 TGCCAGCGATGGCTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 4231 3597559 - 3597584 + T 100 -16.3 -3.90762 | overlap 3597550 3597557 CCAGCGATGGCTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SDY_3871 3598914 - 3597568 - | IS4 orf TERM 4232 3598929 - 3598904 - G 100 -9.8 -5.61596 | opp_overlap 3598904 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 4233 3598904 - 3598929 + g 73 -9.1 -3.61398 | opp_overlap 3598904 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 4234 3598982 - 3598995 + r 81 -3.7 -5.28176 | overlap 3598980 ACTGATCGGCATTAG CCAGC GATG GCAGG TTTTTTATAACTAAA yihK 3600842 - 3599019 - | GTP-binding protein TERM 4235 3600995 - 3601009 + H 75 -10 -3.481 | opp_overlap 3600988 3600989 3601002, overlap 3600991 3601002 TATCCAAAGGTCATT GCACCA ATA TGGTGC TTAATGTTTCCATTG TERM 4236 3602002 - 3601992 - g 70 -6.8 -4.13945 | ACCTTTATGCCAAAA CCGA TGT TCGG TGATAACGGCTCCGG glnA 3601215 - 3602624 + | glutamine synthetase TERM 4237 3602641 - 3602662 + F 74 -8.6 -3.91911 | overlap 3602642 AGTTGAAGTTGTACT ACCCGGCG CAACAA CGCCGGGA TTTAGTTGCCGTGGA TERM 4238 3602642 - 3602661 + F 78 -12.1 -2.94825 | overlap 3602641 GTTGAAGTTGTACTA CCCGGCG CAACAA CGCCGGG ATTTAGTTGCCGTGG TERM 4239 3602686 - 3602703 + F 90 -7 -5.28176 | CCGTGGAAACTTTCA GCCCAT CTCTGC ATGGGC TTTTTTCTCCGTCAA TERM 4240 3603238 - 3603226 - g 75 -4.7 -4.83269 | opp_overlap 3603227, overlap 3603217 3603227 ACATGAGATTAAAAA TCCGC TTG GCGGT TTACGTGGCGCGGCG glnL 3602798 - 3603847 + | nitrogen regulation protein NR(II) glnG 3603859 - 3605268 + | nitrogen regulation protein NR(I) TERM 4241 3605635 - 3605671 + T 74 -10.3 -3.24735 | gap 1, opp_overlap 3605631, overlap 3605631 3605629 TTCTCAGCACATTGA TGGCGCTTTCGTTTTC TACTTT GTAAACGAA-GCGCCA TTCACTATTTAAATC hemN 3607053 - 3605680 - | coproporphyrinogen III oxidase TERM 4242 3607080 - 3607137 + r 87 -9.9 -4.36914 | gap 3, overlap 3607082 3607116 3607119 3607122 CCGATGGCGTCTCTG GCGGCTACGGCGTACCGGCGGATG-CCC ATTTC GGGTCATCAGCCGGT-TGC-GCAGCCAC TTTTGTCGCCGCGAC TERM 4243 3607082 - 3607135 + r 73 -11.1 -2.52946 | gap 3, overlap 3607080 3607116 3607119 3607122 GATGGCGTCTCTGGC GGCTACGGCGTACCGGCGGATG-CCC ATTTC GGGTCATCAGCCGGT-TGC-GCAGCC ACTTTTGTCGCCGCG TERM 4244 3607119 - 3607160 + r 72 -10.2 -2.91144 | overlap 3607082 3607080 3607116 3607122 CCCATTTCGGGTCAT CAGCCGGTTG-CGCAGCCAC TTTT GTCGCCGCGACAACCG-CTG TAGTTTAACGAATAA yihI 3607748 - 3607242 - | hypothetical protein TERM 4245 3607689 - 3607706 + g 82 -9.1 -4.20106 | overlap 3607682 CTGATTCAGCTCTTC GCGCGTT TTGC GACGCGC TTTTGCATGACCTTT TERM 4246 3607857 - 3607812 - H 100 -19.3 -3.69341 | opp_overlap 3607824, overlap 3607824 TCTAACAGAAAGCAA GCAAAGAAAAAAGGCGACAGA TTAC TCTGTCGCCTTTTTTCCTGAC TCATAACCCTTAACG TERM 4247 3607824 - 3607845 + H 100 -14.5 -5.1675 | opp_overlap 3607812 3607824 CAAGCAAAGAAAAAA GGCGACAGA TTAC TCTGTCGCC TTTTTTCCTGACTCA TERM 4248 3607845 - 3607824 - H 100 -14.5 -5.72053 | opp_overlap 3607824, overlap 3607812 CAAGCAAAGAAAAAA GGCGACAGA TTAC TCTGTCGCC TTTTTTCCTGACTCA yihA 3608330 - 3608962 + | GTPase EngB TERM 4249 3609120 - 3609095 - T 100 -19.1 -5.4505 | opp_overlap 3609088 TCGCCCAATAAAAAA CGCCCCAGTCA TTAC TGACTGGGGCG GCTAAAATATTCAGC polA 3612129 - 3609343 - | DNA polymerase I TERM 4250 3610314 - 3610325 + g 81 -7.2 -4.64334 | CCGACGTTGACGGCG CGCC ACCC GGCG TTTTCTTCAGCGGTT TERM 4251 3611501 - 3611531 + g 84 -3.8 -5.24129 | TACAGCGTATCCAGC CCGCCAAGACCTTG CAG CAATGCCTGCGCGG TTTTTTCTCCGACGC TERM 4252 3611735 - 3611748 + g 70 -3.7 -4.66833 | overlap 3611736 CCAGTGCTGATCAGC ACCGG ACGC CCGGC TTTTTCAGCTTCGCG TERM 4253 3612299 - 3612322 + H 78 -6.1 -4.56642 | overlap 3612301 TCGCTTTTAATTTAT TATCATGCT TTTTAC AGCATGATG TTTGTCTTTGTTTTT TERM 4254 3612464 - 3612474 + H 74 -8.2 -3.9122 | overlap 3612469 TTTCTGCTAAAATCT GCGC CTT GCGC TTCTTTAGCGCACTG TERM 4255 3612563 - 3612583 + G 90 -6.9 -5.1675 | overlap 3612566 TTTTGCTGAGTATCG TATTGACCA TTT TGGTCACTA TTTTTTGCTCCGTCC TERM 4256 3612650 - 3612665 + G 77 -3.2 -5.10601 | overlap 3612651 CTGTGCCAGTCATTT GGCGAA AGGT TTCGCG TTTTTGTGATTTTAT TERM 4257 3612919 - 3612956 + G 70 -6.3 -4.22554 | gap 1 GGCCTAGCGTGCTGG GCGCTGGATATGCCGTTT ATG AAGCGTTAT-TCCCGCGC TTATTTATTACGTCA yihG 3612493 - 3613425 + | putative endonuclease TERM 4258 3613427 - 3613463 + T 83 -8.9 -4.25104 | gap 1, opp_overlap 3613422 3613427 3613426, overlap 3613428 3613429 GTCAGAATAAGTAAG T-TTTACTCGCCTCTG AATGAG CAGAGGCGAGTGAGTA TTTTAATGAACAAAA TERM 4259 3613428 - 3613461 + T 100 -14 -3.73042 | opp_overlap 3613422 3613427 3613426, overlap 3613427 3613429 TCAGAATAAGTAAGT TTTACTCGCCTCTG AATGAG CAGAGGCGAGTGAG TATTTTAATGAACAA TERM 4260 3613429 - 3613460 + T 93 -15.3 -2.83504 | opp_overlap 3613422 3613427 3613426, overlap 3613428 3613427 CAGAATAAGTAAGTT TTACTCGCCTCTG AATGAG CAGAGGCGAGTGA GTATTTTAATGAACA SDY_3881 3614441 - 3614226 - | iso-IS1 ORF2 insB 3616061 - 3615684 - | IS1 ORF2 insA 3616381 - 3616106 - | IS1 ORF1 TERM 4261 3616580 - 3616561 - R 100 -13.6 -6.01369 | opp_overlap 3616561 TAAATAATAAAAAAA GCCCGTGA ATAT TCACGGGC TTTATGTAATTTACA TERM 4262 3616561 - 3616580 + r 100 -13.6 -4.17516 | opp_overlap 3616561 TAAATAATAAAAAAA GCCCGTGA ATAT TCACGGGC TTTATGTAATTTACA TERM 4263 3616587 - 3616603 + r 75 -3.1 -5.24129 | overlap 3616585 TTCACGGGCTTTATG TAATTTA CAT TGAATTA TTTTTTCTCGGACAA dsbA 3617227 - 3616601 - | periplasmic protein disulfide isomerase I yihE 3618230 - 3617244 - | serine/threonine protein kinase yihD 3618576 - 3618307 - | hypothetical protein mobA 3618646 - 3619230 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 4264 3619439 - 3619414 - g 100 -14.1 -3.85698 | opp_overlap 3619411, overlap 3619377 3619371 CTGGCGCGGCACAAA CCATCGTTGCC AGCC AGCAACGATGG GCCTTGATGACGGAA mobB 3619227 - 3619739 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 4265 3619749 - 3619782 + T 85 -6 -5.40072 | opp_overlap 3619746 3619749 3619761, overlap 3619750 GGATAAGCAAGAGTA GGCTGGA-GCAGACGC GCCA GCGTC-GCATCCGGCA TTTTTTTGCACCAAC TERM 4266 3619750 - 3619781 + T 79 -9.5 -3.83561 | opp_overlap 3619749 3619746 3619761, overlap 3619749 GATAAGCAAGAGTAG GCTGGA-GCAGACGC GCCA GCGTC-GCATCCGGC ATTTTTTTGCACCAA TERM 4267 3619798 - 3619830 + T 95 -11.4 -4.50627 | gap 1, opp_overlap 3619805, overlap 3619805 TTTTTTTGCACCAAC GCAAAAAGGCCATCC GTCA GGATGGCCTTTC-GC TTTATTTGATGCCTG TERM 4268 3619805 - 3619824 + T 100 -13.6 -3.96542 | opp_overlap 3619805, overlap 3619798 GCACCAACGCAAAAA GGCCATCC GTCA GGATGGCC TTTCGCTTTATTTGA TERM 4269 3619824 - 3619805 - T 100 -13.6 -4.7629 | opp_overlap 3619805 3619798 GCACCAACGCAAAAA GGCCATCC GTCA GGATGGCC TTTCGCTTTATTTGA TERM 4270 3619971 - 3619992 + T 74 -8.7 -3.91196 | opp_overlap 3619962 GCAAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 4271 3622457 - 3622469 + T 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 4272 3623065 - 3623102 + T 93 -6.3 -5.68438 | opp_overlap 3623061 3623067, overlap 3623067 ATTTTTAAAGAGCAA AACTTCGCAGTGAACCT TTGG AGGTACACTCTGAAGTA TTTTTTATTTAATCA TERM 4273 3623100 - 3623067 - T 75 -6.7 -4.49756 | opp_overlap 3623065 3623067, overlap 3623061 TTTTAAAGAGCAAAA CTTCGCAGTGAACCT TTGG AGGTACACTCTGAAG TATTTTTTATTTAAT TERM 4274 3623067 - 3623100 + T 86 -8.9 -4.47052 | opp_overlap 3623061 3623067, overlap 3623065 TTTTAAAGAGCAAAA CTTCGCAGTGAACCT TTGG AGGTACACTCTGAAG TATTTTTTATTTAAT hemG 3625854 - 3625309 - | protoporphyrinogen oxidase trkH 3627317 - 3625866 - | potassium transporter TERM 4275 3626140 - 3626121 - G 75 -5 -4.84761 | ATAGGCGGAGAAAAA TCCCCAAA CGGC TTCGAGGA TACGTTCCGGCAGTG TERM 4276 3626388 - 3626358 - G 77 -9.7 -3.57144 | gap 1 GCTGTCAGTCGTAAA CCCGGCGGTTGTCG CCAT CGACA-CCACCTGG AAAAACGCCTGGTTA TERM 4277 3627077 - 3627058 - G 78 -5.6 -4.73682 | TCCGAGAAGATAAAA GGGAGCGC ACCG ACGCTACC CAGCACGGTCCAGAA yigZ 3627973 - 3627356 - | hypothetical protein TERM 4278 3627686 - 3627655 - G 77 -11.6 -3.23853 | opp_overlap 3627654 3627657, overlap 3627653 CGGTGCCAAGCAATA TGCCGCCGTAGTAG CGCA CTACCACAGCGGTA ATTTCCCCGACGCCG pepQ 3629301 - 3627970 - | proline dipeptidase TERM 4279 3629373 - 3629395 + H 72 -4.8 -4.60648 | CCAGAGCGTGATTTC TGCCGAGC GTGATCA GATCGGCA TTTCTTTAATCTTTT TERM 4280 3629686 - 3629706 + G 76 -3.9 -4.91459 | overlap 3629687 AAAGCAGCCTTTATC GTCGGTGCT GAT ATCACCGAA TTTTTGTCCCTGTTC fadB 3629491 - 3631680 + | multifunctional fatty acid oxidation complex subunit alpha fadA 3631690 - 3632853 + | 3-ketoacyl-CoA thiolase TERM 4281 3632941 - 3632922 - T 79 -11.4 -3.30243 | opp_overlap 3632912 ATGTAGGCCTGATAA GACGCGGC CAGC GCCGCATC AGGCATCGTGTGCCG TERM 4282 3633015 - 3633033 + T 100 -9.5 -5.76633 | TTAGTTGCCGTTCTT CCCGCCT GTCAG GGGCGGG TTTTTTTATATCTCA fre 3633747 - 3633046 - | FMN reductase TERM 4283 3633687 - 3633664 - G 79 -3.7 -5.14626 | overlap 3633666 AGCACGAAAAGAAAA GGCCGCGTC TGGCAC GATGCGGAC ACGATATACGGTATT TERM 4284 3633788 - 3633800 + r 72 -6.2 -4.24123 | opp_overlap 3633788 3633787 3633783 TAGGGCAAAACAAAC GCGC ATCAG GCGC TTTTACCGTTGTTAA yigC 3635286 - 3633793 - | 3-octaprenyl-4-hydroxybenzoate decarboxylase TERM 4285 3634656 - 3634638 - G 70 -6.6 -4.04206 | CCAGCGCCACAGAAA CCGGGAAA CGT TCGCCCGG ATGCGCCGCACACCA TERM 4286 3634874 - 3634886 + g 85 -3.3 -5.4505 | overlap 3634869 TGGAGATCGACGTCA TCGCC AGA GACGA TTTTTTGTTGGCAGG rfaH 3635453 - 3635941 + | transcriptional activator RfaH TERM 4287 3636734 - 3636759 + T 86 -8.9 -4.49364 | opp_overlap 3636736 3636739, overlap 3636735 3636736 3636739 TCCTGTACTCCATAT GACAACCGCCC TGAC GGGCGGTTGAA TTTATTCTTCAGTTT TERM 4288 3636735 - 3636758 + T 81 -12.4 -3.27992 | opp_overlap 3636736 3636739, overlap 3636734 3636736 3636739 CCTGTACTCCATATG ACAACCGCCC TGAC GGGCGGTTGA ATTTATTCTTCAGTT TERM 4289 3636757 - 3636736 - T 90 -15.9 -2.63596 | opp_overlap 3636735 3636734 3636736 3636739, overlap 3636739 CTGTACTCCATATGA CAACCGCCC TGAC GGGCGGTTG AATTTATTCTTCAGT TERM 4290 3636736 - 3636757 + T 90 -15.9 -2.5571 | opp_overlap 3636736 3636739, overlap 3636735 3636734 3636739 CTGTACTCCATATGA CAACCGCCC TGAC GGGCGGTTG AATTTATTCTTCAGT TERM 4291 3636754 - 3636739 - T 82 -11.8 -3.47078 | opp_overlap 3636736 3636735 3636734 3636739, overlap 3636736 TACTCCATATGACAA CCGCCC TGAC GGGCGG TTGAATTTATTCTTC TERM 4292 3636739 - 3636754 + T 82 -11.8 -3.41554 | opp_overlap 3636739 3636736, overlap 3636736 3636735 3636734 TACTCCATATGACAA CCGCCC TGAC GGGCGG TTGAATTTATTCTTC yigU 3637537 - 3636761 - | TatABCE protein translocation system subunit TERM 4293 3637199 - 3637187 - G 70 -4.8 -4.53303 | overlap 3637196 CATGCCGATATAAAA CAGC AGAGA GCTG GAAACCAGCAGCGGC SDY_3906 3638055 - 3637540 - | sec-independent translocase tatA 3638370 - 3638059 - | twin argininte translocase protein A ubiB 3640047 - 3638407 - | putative ubiquinone biosynthesis protein UbiB TERM 4294 3639928 - 3639965 + g 83 -9.9 -4.1196 | gap 1, opp_overlap 3639928 3639931 TGGCATCCAGAATAA TGAGTATCGCCATAGCCG TAG CGGC-AGGGTGATACGCA TTTTGGGGATCAGTT yigP 3640649 - 3640044 - | hypothetical protein TERM 4295 3640503 - 3640481 - G 76 -10.6 -3.29471 | overlap 3640482 CGCCCAGTACATCAA CCTGGCGTTC GCT GAACACCAGA ATCAATGACGTCGAA TERM 4296 3640502 - 3640482 - G 73 -11.9 -2.57468 | overlap 3640481 GCCCAGTACATCAAC CTGGCGTTC GCT GAACACCAG AATCAATGACGTCGA ubiE 3641418 - 3640663 - | ubiquinone/menaquinone biosynthesis methyltransferase yigN 3642940 - 3641513 - | DNA recombination protein RmuC TERM 4297 3642325 - 3642339 + g 85 -7.1 -4.78839 | TCAATACTACCTCGC CCCAG TTGCC CTGGG TTTTATTGTCGCCTT TERM 4298 3643061 - 3643045 - R 100 -9.4 -4.98672 | CGCAAAAATACAAAA GGCCGA ACGCG TCGGCC TTCAGACAGGAGAAG udp 3643842 - 3643081 - | uridine phosphorylase SDY_3913 3644050 - 3644919 + | putative enzyme TERM 4299 3644924 - 3644956 + T 74 -6.9 -4.36914 | opp_overlap 3644928 3644930, overlap 3644930 CGTCGCTGTAATGAG AAAAGACCGGGTGGT ATT ACCACCCGGTTTGGA TTTTATCCCCGACGC TERM 4300 3644952 - 3644928 - T 100 -14.3 -4.5442 | opp_overlap 3644924 3644930, overlap 3644930 GCTGTAATGAGAAAA GACCGGGTGGT ATT ACCACCCGGTT TGGATTTTATCCCCG TERM 4301 3644950 - 3644930 - T 100 -16.9 -3.8823 | opp_overlap 3644924 3644930, overlap 3644928 TGTAATGAGAAAAGA CCGGGTGGT ATT ACCACCCGG TTTGGATTTTATCCC TERM 4302 3644930 - 3644950 + T 100 -16.9 -3.96705 | opp_overlap 3644930 3644928, overlap 3644924 TGTAATGAGAAAAGA CCGGGTGGT ATT ACCACCCGG TTTGGATTTTATCCC metE 3647220 - 3644959 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 4303 3646150 - 3646164 + g 78 -5.7 -4.82901 | CACATCGCGCAGCAG TGCCA GTTCA TGGCA TTTTTGTAGGGCGAA TERM 4304 3647043 - 3647065 + g 70 -4.1 -4.71426 | gap 1, opp_overlap 3647034, overlap 3647046 CAAAATCGCCCACCG GC-AGCAGGT CGAT ACCCGCTTGC TTTTGTTGATCCCAG TERM 4305 3647491 - 3647481 - gR 74 -6.8 -4.23434 | overlap 3647482 TAAAACACCTGAAAA CGCT ACA AGCG TTGCGGAACTGCGGC yigM 3649196 - 3648297 - | hypothetical protein metR 3647456 - 3648409 + | regulator for metE and metH SDY_3917 3650072 - 3649272 - | putative sugar phosphatase pldB 3651102 - 3650080 - | lysophospholipase L2 TERM 4306 3650147 - 3650132 - G 74 -3.2 -5.00616 | TGCCTGTTGAAAAAA TCAACG ATGG CGTGGA GCGCGACTGAGCGCA yigK 3651417 - 3651833 + | hypothetical protein TERM 4307 3651874 - 3651838 - T 72 -5.2 -4.58395 | gap 1, opp_overlap 3651842 3651851, overlap 3651842 GGCATGCGTGAAAAA TAATGTCGGATGCGGCG TAAA CGCCTTATCCAAC-TTA CTCTGAAGACGCGTC yigJ 3652263 - 3651895 - | hypothetical protein recQ 3654414 - 3652579 - | ATP-dependent DNA helicase RecQ TERM 4308 3652778 - 3652794 + g 71 -9.5 -3.5394 | opp_overlap 3652777 TCATCGGCAATCGAT TTACGCA GTT TGCGTAA TTTGGCGAACAGTTT TERM 4309 3654457 - 3654436 - R 100 -12.3 -5.27335 | overlap 3654430 TGCCTGAAATAAAAA CAGGCGCTA TTTT CAGCGCCTG CGCGAGAAACTGCAA pldA 3655410 - 3654541 - | phospholipase A yigI 3655575 - 3656042 + | hypothetical protein TERM 4310 3656065 - 3656053 - f 72 -4.8 -4.67943 | opp_overlap 3656053, overlap 3656048 3656056 GTTGAAGACATAAAA GCAG GTAAA CTGC TGTTACCAATTAAAA TERM 4311 3656108 - 3656143 + G 74 -3.2 -4.89521 | gap 1, opp_overlap 3656110 3656111, overlap 3656111 GATGGATGCAAAACA AACGCGGCAGG-GCG TATTACT CGCTCTTGCCGCTTA TTTTATTTGGGGTAT TERM 4312 3656141 - 3656110 - g 70 -3.6 -4.68908 | gap 1, opp_overlap 3656108 3656111, overlap 3656111 TGGATGCAAAACAAA CGCGGC-AGGGCG TATTACT CGCTCTTGCCGCT TATTTTATTTGGGGT TERM 4313 3656111 - 3656140 + G 90 -9.3 -4.54026 | gap 1, opp_overlap 3656111 3656110, overlap 3656108 GGATGCAAAACAAAC GCGGCAGG-GCG TATTACT CGCTCTTGCCGC TTATTTTATTTGGGG TERM 4314 3656899 - 3656889 - g 72 -4.6 -4.59773 | TTTTATGGTGAAAAA CCGG GTG CCGA TAAAATGGTGACTTT TERM 4315 3656906 - 3656918 + G 72 -5.5 -4.46112 | opp_overlap 3656906 GGGTGCCGATAAAAT GGTGA CTT TCGCC TTTATTTGGGTGGCG rarD 3656094 - 3656987 + | hypothetical protein TERM 4316 3657040 - 3657011 - f 89 -9.4 -4.59109 | opp_overlap 3657013 3657032, overlap 3656998 TATATTCTGGAAAAA TATGCCGACTCT TGCATG AGAGTGGGCATA TTGCCATGCTGGGTA insA 3657107 - 3657382 + | IS1 ORF1 insB 3657427 - 3657804 + | IS1 ORF2 insB 3658639 - 3658262 - | IS1 ORF2 insA 3658959 - 3658684 - | IS1 ORF1 TERM 4317 3659154 - 3659189 + r 93 -9.8 -4.57341 | gap 1, opp_overlap 3659157 3659159, overlap 3659146 3659156 3659157 CCTGGAGCCTTTGAA TAAG-AGGTGGCTTAGC CAG GCTAAGCCACCGCCTTC TTTTTACAACCAGTT TERM 4318 3659156 - 3659186 + r 100 -14 -4.40561 | opp_overlap 3659157 3659159, overlap 3659146 3659154 3659157 TGGAGCCTTTGAATA AGAGGTGGCTTAGC CAG GCTAAGCCACCGCC TTCTTTTTACAACCA TERM 4319 3659157 - 3659185 + r 100 -17.5 -3.23855 | opp_overlap 3659157 3659159, overlap 3659146 3659156 3659154 GGAGCCTTTGAATAA GAGGTGGCTTAGC CAG GCTAAGCCACCGC CTTCTTTTTACAACC TERM 4320 3659185 - 3659157 - R 100 -17.5 -3.62046 | opp_overlap 3659146 3659156 3659154 3659157, overlap 3659159 GGAGCCTTTGAATAA GAGGTGGCTTAGC CAG GCTAAGCCACCGC CTTCTTTTTACAACC TERM 4321 3659183 - 3659159 - R 100 -18.7 -3.38991 | opp_overlap 3659146 3659157 3659156 3659154, overlap 3659157 AGCCTTTGAATAAGA GGTGGCTTAGC CAG GCTAAGCCACC GCCTTCTTTTTACAA corA 3660143 - 3659193 - | magnesium/nickel/cobalt transporter CorA TERM 4322 3661080 - 3661094 + G 79 -3.5 -5.06414 | GTTGGGATTAATAAA CATGG GAATG CCGTG TTTTTGTTGAGCCAG yigE 3660513 - 3661277 + | periplasmic protein TERM 4323 3661380 - 3661370 - g 100 -3.2 -5.85011 | opp_overlap 3661379 CAAAAATGAAAAAAA CGCT CGC AACG TTATTTTTATTAACG SDY_3931 3661360 - 3662262 + | hypothetical protein uvrD 3664479 - 3662317 - | DNA-dependent helicase II TERM 4324 3663116 - 3663135 + g 95 -10 -4.72272 | gap 1, opp_overlap 3663101, overlap 3663119 CGCTGCAAGGCGCTG GCAGCTCGC CCG GCGAGC-GC TTTTTCCTGCAACAG TERM 4325 3663119 - 3663133 + g 73 -11.4 -2.65504 | opp_overlap 3663101, overlap 3663116 TGCAAGGCGCTGGCA GCTCGC CCG GCGAGC GCTTTTTCCTGCAAC TERM 4326 3663448 - 3663426 - G 74 -9.8 -3.48276 | opp_overlap 3663435 TGCTGCGGTAGAGAA TGGCGCACTC GGC GAGCGCCCCA CCGTTGTCCTGCCAG TERM 4327 3664429 - 3664407 - G 71 -9 -3.44051 | opp_overlap 3664412 3664414 CCGCCAGCACCAGAA GGTTGCTGCG TGG CGCGGCCACC GCTTCGCGCTGTTTG TERM 4328 3664412 - 3664440 + g 83 -10.1 -4.05714 | opp_overlap 3664407, overlap 3664414 AGCACCAGAAGGTTG CTGCGTGGCGCGG CCA CCGCTTCGCGCTG TTTGTCATTAAGGCT TERM 4329 3664414 - 3664438 + g 85 -11.3 -3.6217 | opp_overlap 3664407, overlap 3664412 CACCAGAAGGTTGCT GCGTGGCGCGG CCA CCGCTTCGCGC TGTTTGTCATTAAGG yigB 3665279 - 3664563 - | flavin mononucleotide phosphatase xerC 3666175 - 3665279 - | site-specific tyrosine recombinase XerC TERM 4330 3665591 - 3665560 - G 79 -5 -4.96848 | overlap 3665535 3665585 GTTTCGACAGAAAAA GCGCGTCGTCTTCG CTAC CAAACAGGTCGCGC AAATCAAGCCAGTGC TERM 4331 3665824 - 3665837 + g 70 -4.5 -4.57569 | overlap 3665823 GCAGCCGATTCATAT CGTCG ACGT CGATG TTTTTCGGCAGATGA yigA 3666879 - 3666172 - | hypothetical protein TERM 4332 3666648 - 3666625 - G 85 -8.8 -4.48221 | opp_overlap 3666625 3666627, overlap 3666620 3666617 GAGTAAGCGATAAAA CAGGCCTTCG TTGG CGATAGCCTG TTCCATCAACAGCGC TERM 4333 3666761 - 3666724 - G 74 -10.6 -3.16564 | gap 1, opp_overlap 3666723 3666724, overlap 3666729 GTGCCACTCGACCAA CGAAACG-GTGCCGCGT ACCGG ATGCGGCACACGTATCG CTTCTACTGCGCGCG TERM 4334 3666724 - 3666761 + g 76 -12.8 -2.64099 | gap 1, opp_overlap 3666724 3666729, overlap 3666723 GTGCCACTCGACCAA CGAAACG-GTGCCGCGT ACCGG ATGCGGCACACGTATCG CTTCTACTGCGCGCG TERM 4335 3666756 - 3666729 - G 72 -7.7 -3.95852 | gap 1, opp_overlap 3666724 3666723, overlap 3666724 ACTCGACCAACGAAA CG-GTGCCGCGT ACCGG ATGCGGCACACG TATCGCTTCTACTGC dapF 3667700 - 3666876 - | diaminopimelate epimerase yifL 3667940 - 3667737 - | hypothetical protein TERM 4336 3667807 - 3667839 + g 71 -2.5 -4.96848 | ACCGTGGATTGCGTT TGCGTCTCTACCGGT TTG GTCGGCGGCGGTGCA TTTTTCTCTGCAGGC SDY_3939 3668612 - 3668127 - | hypothetical protein cyaY 3668403 - 3668723 + | frataxin-like protein TERM 4337 3668729 - 3668758 + Tr 77 -11.5 -3.14211 | gap 1, opp_overlap 3668726 TTTCCGCTAAGATTG CATGCCGGATAAGC CTC GCTT-TCCGGCACG TTCATCACGAAAAAT cyaA 3671309 - 3668763 - | adenylate cyclase TERM 4338 3669147 - 3669167 + g 75 -6.8 -4.30987 | overlap 3669143 GTGATTGGTTTCAAC CTGCACTG ACAGG CCGTGCAG TTTGTTATGCGAAAT TERM 4339 3669302 - 3669286 - G 71 -9.3 -3.53811 | CGCAGCGCCTTGAAA CGCCCGG TTT CCTGGCG GGTGCTGGAAAGACG hemC 3671675 - 3672637 + | porphobilinogen deaminase hemD 3672634 - 3673374 + | uroporphyrinogen-III synthase TERM 4340 3673650 - 3673639 - g 70 -3.6 -4.62336 | ACGGCATTGCAAAAA GCCC AGGA GAGC CAAAAAGCCGAGCTG hemX 3673396 - 3674577 + | putative uroporphyrinogen III C-methyltransferase TERM 4341 3675539 - 3675525 - g 70 -4.2 -4.62302 | overlap 3675526 GAACAGCTGGAAAAA GTGCTG CGC CAGCAA ATCAAAAACGTCGGC hemY 3674580 - 3675776 + | putative protoheme IX biogenesis protein TERM 4342 3675855 - 3675830 - f 100 -11.9 -5.4251 | CTGACACATAAAAAA CGCCTGCTC TTATTACG GAGCAGGCG TTAAAACAGGTCTGT TERM 4343 3676337 - 3676347 + F 72 -2.6 -4.91459 | opp_overlap 3676337 CATTTTCTGGATAAA TAAA TAA TTTA TTTTTGTCACTATTA TERM 4344 3676680 - 3676665 - g 72 -4.6 -4.59342 | overlap 3676666 CGCAGGATAAAGAAA CCCAGC AGAA GCTGGC AGAACTTGAGAAAAA TERM 4345 3676712 - 3676698 - g 100 -3.5 -5.63504 | overlap 3676699 AACTTGAGAAAAAAA CCGGT AAGAA ACCGA ATGTGGTTGTTTTCT aslA 3676454 - 3678109 + | arylsulfatase TERM 4346 3678254 - 3678272 + F 100 -11.7 -5.30155 | GGCAATCAACCGCAG GCGGCCA CAAAA TGGCCGC TTTTTTACTTACTCA SDY_3946 3679314 - 3679709 + | iso-IS1 ORF2 TERM 4347 3680423 - 3680410 - T 100 -9.5 -6.14618 | overlap 3680412 CAGAAAACAAAAAAA CCCGC CGAA GCGGG GTTCAAAATTGGTCG yifK 3682357 - 3680972 - | putative transport protein YifK TERM 4348 3681394 - 3681410 + g 72 -5.7 -4.58395 | AAACTTTCGCCATCG CCGCCGG TAA CTGACGG TTTTTCGCCAGTGCG TERM 4349 3681865 - 3681885 + g 71 -10.5 -2.87051 | opp_overlap 3681865, overlap 3681864 CCAGGCCAATGACAA TCATCACGA TAA TCGTGGTGA CTTTGATCATCGCGA TERM 4350 3682031 - 3682021 - G 77 -8.2 -4.06892 | opp_overlap 3682020 3682017 AGAACTGGACATAAA CGCC AAT GGCG GTGATTTCAGAGATC TERM 4351 3682386 - 3682398 + r 72 -9.1 -3.57039 | GTGTTTGCATGCTTT CCGGT GTT ACCGG TTATCGTTATGGGTA TERM 4352 3682534 - 3682498 - R 76 -2.5 -5.4505 | gap 3, opp_overlap 3682506, overlap 3682499 3682501 3682503 3682505 TTGTGTAATAAAAAA GCAGACAGGCGACGGAGT GACC ACTCCGTCG-CT-T-TAC AAAGAGAGGAAAATC TERM 4353 3682534 - 3682501 - R 75 -9.5 -3.5087 | opp_overlap 3682506, overlap 3682498 3682499 3682503 3682505 TGTAATAAAAAAGCA GACAGGCGACGGAGT GACC ACTCCGTCGCTTTAC AAAGAGAGGAAAATC TERM 4354 3682532 - 3682503 - R 77 -10.7 -3.30867 | opp_overlap 3682506, overlap 3682498 3682501 3682499 3682505 TAATAAAAAAGCAGA CAGGCGACGGAGT GACC ACTCCGTCGCTTT ACAAAGAGAGGAAAA TERM 4355 3682530 - 3682505 - R 83 -13.3 -3.18764 | opp_overlap 3682506, overlap 3682503 3682498 3682501 3682499 ATAAAAAAGCAGACA GGCGACGGAGT GACC ACTCCGTCGCT TTACAAAGAGAGGAA TERM 4356 3682506 - 3682529 + r 100 -16.8 -3.53012 | opp_overlap 3682505 3682503 3682498 3682501 3682499 TAAAAAAGCAGACAG GCGACGGAGT GACC ACTCCGTCGC TTTACAAAGAGAGGA wecG 3683288 - 3682548 - | putative UDP-N-acetyl-D-mannosaminuronic acid transferase TERM 4357 3683008 - 3683043 + g 77 -6 -4.68593 | gap 1, opp_overlap 3683027, overlap 3683011 TCTTCCCAGAGATCG GCACCGGCA-ACGCGGG AAA CCTGCGCCTGCGGGTAC TTTTTACGTACTGAA wecF 3684643 - 3683291 - | putative entero common antigen polymerase TERM 4358 3684110 - 3684095 - G 71 -3.2 -4.77036 | GCTGACGAGGAAAAA CAGCCA CGCT TTGCTG TCCTGGCGCAGAAAG TERM 4359 3684178 - 3684161 - G 71 -3.3 -4.80167 | overlap 3684164 GATGAAAAAGTAAAA GAAGCGT TTTA ACGCCAC GCCGGAGACTTCACT TERM 4360 3684175 - 3684164 - G 74 -5.8 -4.47007 | overlap 3684161 GAAAAAGTAAAAGAA GCGT TTTA ACGC CACGCCGGAGACTTC TERM 4361 3684483 - 3684472 - G 81 -5.8 -4.82855 | overlap 3684476 CATCAAAGCGAAAAA CCAG CACG CTGG TCAGCGGGAAGCCGA yifM 3685719 - 3684640 - | 4-alpha-L-fucosyltransferase TERM 4362 3685364 - 3685350 - G 71 -2.1 -5.02074 | GTAGCGGGTAAAAAA GCTTA TATAT CAAGC CACTGGAAAGCTCAT TERM 4363 3685667 - 3685657 - G 72 -4.6 -4.65895 | overlap 3685666 CGCGTCATTGAAAAA CCGC AAA ACGG TTCGGTTATGGTGAG wzxE 3686966 - 3685716 - | putative cytochrome TERM 4364 3686852 - 3686832 - G 76 -11.1 -3.36289 | GAGCACGGTAATCAA CTGGCGGAA ATT TGCCGCCAG CCCAAGCCCCGCCGG wecE 3688098 - 3686968 - | TDP-4-oxo-6-deoxy-D-glucose transaminase TERM 4365 3687999 - 3687971 - G 81 -9.6 -4.07568 | gap 1, opp_overlap 3687952, overlap 3687952 TTGGCGCTGCCAAAA CGTTGCT-CCAGC CACT GCTGGCAGCGACG GGTAAAACCGCCATC wecD 3688648 - 3688103 - | TDP-fucosamine acetyltransferase TERM 4366 3688378 - 3688391 + g 76 -8.1 -4.1899 | opp_overlap 3688376 3688378 ATTGATGATCAAAGA TGCCG CGCA CGGCA TTTTCAATCCACTGC rffH 3689636 - 3688755 - | glucose-1-phosphate thymidylyltransferase TERM 4367 3689384 - 3689370 - G 72 -7.8 -3.97947 | opp_overlap 3689375 TTCACCGATGATAAA GGCCTG CGC CAGACC GTCCGGGCTGGGCTG TERM 4368 3690108 - 3690138 + r 73 -7.5 -4.07885 | gap 1, opp_overlap 3690100 GACCATAGGTTCGCA GCCAGGCGCGCACC AGAT GGT-CGCTGCTGGC TTTTGACGCGGAATA wecC 3691892 - 3690630 - | UDP-N-acetyl-D-mannosamine dehydrogenase TERM 4369 3691237 - 3691222 - G 70 -5.4 -4.31692 | AATTCATTAGCAAAA GCGATA TTCA CATCGC GGAAGCTGTTTTCGG TERM 4370 3691714 - 3691699 - G 76 -3.9 -5.00616 | CTCGCTCGTAAAAAA CCGCC TTCTAC GGCAG TTTTTACTACGCTCG wecB 3693061 - 3691889 - | UDP-N-acetyl glucosamine -2-epimerase TERM 4371 3692328 - 3692346 + g 78 -8.9 -4.15044 | TGCGTGGTGGCGATG TCTGCCA GCGCG TGGCAGA TTTCTTCAAAGCCAC TERM 4372 3693064 - 3693039 - G 100 -18.3 -3.61517 | opp_overlap 3693036 3693059 3693063 ATTCTCTTCGAATAA GCGGCGAGCGC CTTT GCGCTCACCGC AGCAGTGTTGCTATT wzzE 3694124 - 3693075 - | lipopolysaccharide biosynthesis protein WzzE TERM 4373 3693707 - 3693727 + g 72 -11.1 -3.02144 | opp_overlap 3693711 3693712, overlap 3693712 TAATCATTTCATCCA GCAACGCCG CAT CGGCTTTGC TGTTGCCCACCATCC TERM 4374 3693712 - 3693722 + g 74 -8.2 -3.92324 | opp_overlap 3693711 3693712, overlap 3693707 ATTTCATCCAGCAAC GCCG CAT CGGC TTTGCTGTTGCCCAC rfe 3695236 - 3694133 - | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase TERM 4375 3694170 - 3694180 + g 70 -6.8 -4.11751 | overlap 3694178 CCACCACGATTTCTA CGCA GTC TGCG TTTTACGCGCTTAAT TERM 4376 3694795 - 3694757 - G 89 -14 -3.14881 | opp_overlap 3694765, overlap 3694765 3694792 CAACCCGCCCAGCAA GCCATCAATGCCATCAAC CAT GTTGAACGCATTAATGGC CGCCCAGACGGCAAA TERM 4377 3695216 - 3695200 - G 100 -8.1 -5.7946 | TCGTGAATAAAAAAA TACTGAT GAG ATCAGTA CTCACTGTCAGTAAA SDY_3965 3695466 - 3695248 - | hypothetical protein TERM 4378 3695461 - 3695432 - G 95 -13.7 -3.38183 | opp_overlap 3695437, overlap 3695437 TTACAGATATAAAAG CAAAACGCCACGT AAAC ACGTGGCGTTTTT GGCATAAGACAAATT TERM 4379 3695456 - 3695437 - G 100 -13.6 -4.75518 | opp_overlap 3695437, overlap 3695432 GATATAAAAGCAAAA CGCCACGT AAAC ACGTGGCG TTTTTGGCATAAGAC TERM 4380 3695437 - 3695456 + g 100 -13.6 -4.62069 | opp_overlap 3695432 3695437 GATATAAAAGCAAAA CGCCACGT AAAC ACGTGGCG TTTTTGGCATAAGAC rho 3696735 - 3695476 - | transcription termination factor Rho TERM 4381 3696332 - 3696344 + g 70 -4.1 -4.63486 | TGCAGCGGGGTTAAG TTCTC AAA GAGGA TTTTGTTGCGGGCGT rhoL 3696921 - 3696820 - | putative Rho operon leader peptide trxA 3697445 - 3697062 - | thioredoxin TERM 4382 3698270 - 3698252 - g 100 -7.4 -5.5604 | overlap 3698253 CTAACGAAGAAAAAA TGCGTTTG CTG CAAACGCT GATCGAAGAAGAGTG TERM 4383 3698269 - 3698253 - g 86 -10.9 -3.91997 | overlap 3698252 TAACGAAGAAAAAAT GCGTTTG CTG CAAACGC TGATCGAAGAAGAGT rhlB 3697522 - 3698787 + | ATP-dependent RNA helicase RhlB TERM 4384 3698876 - 3698843 - f 86 -11.9 -3.54382 | opp_overlap 3698853, overlap 3698839 3698844 TGGCAAGAGAATGAA TCCTGAATCACTTAC TGTA GTAAGTAATTCAGGT GAAAGAATGCAGCCA TERM 4385 3698875 - 3698844 - f 90 -15.4 -2.72147 | opp_overlap 3698853, overlap 3698843 3698839 GGCAAGAGAATGAAT CCTGAATCACTTAC TGTA GTAAGTAATTCAGG TGAAAGAATGCAGCC TERM 4386 3699042 - 3699032 - g 81 -6.8 -4.65916 | CTGACGCGAATAAAA CGCA AAG TGCG TCTGGCTGCTGGCCT TERM 4387 3699726 - 3699743 + G 93 -9.9 -4.57569 | TGTTCCCGAGTGGTC TGGCGAT CCTG ATCGCCA TTTTTACCGAACTGA TERM 4388 3700388 - 3700362 - g 72 -8.8 -3.73224 | gap 1 TTATTGCTCAGGAAA GCCAGTGG-CA GAGCTA TGTCCACTGGC CGCTGGAAGTGCATT gppA 3698921 - 3700405 + | guanosine pentaphosphate phosphohydrolase TERM 4389 3700415 - 3700446 + T 72 -10.8 -2.76911 | opp_overlap 3700413 3700414, overlap 3700414 3700410 3700424 CATTAATGAGTAAGT GCCGGATGCGATGC TGAC GCATCTTTTCCGGC CTTGATTATTTCCCT rep 3702473 - 3700452 - | ATP-dependent DNA helicase Rep TERM 4390 3700616 - 3700631 + g 81 -10.4 -3.90922 | CCGGGCGCACCAGTT CGCCGT ACTG ACGGCG TTCTTTACACAGCGT TERM 4391 3700935 - 3700962 + g 84 -10.6 -3.72592 | GCCTTCGAGCATCTC CGTCATCCAGCT AAAC AGTTGGTTGACG TTCTTCATGCGCATT TERM 4392 3701358 - 3701346 - G 74 -3.3 -5.01497 | AGGACGAGAGAAAAA CGACG TAC CACCG GATATTTTGTACGGG TERM 4393 3702009 - 3702031 + g 72 -6.9 -4.17425 | CCGCTCGCCCTTTGC CTCTGCCGC CGCCT GCGCCGGAG TTTTGAGATCGTTCT SDY_3972 3703253 - 3704158 + | insertion element IS2 transposase InsD TERM 4394 3704503 - 3704485 - f 73 -4.6 -4.81863 | AAATTGACAATAAAA TCACCATC CCC GATAATGA CTTTGTGGCCCATAG TERM 4395 3704555 - 3704571 + F 100 -13.7 -4.18802 | TGAGGGACCTGCGAA GCCCGGA TTT TCCGGGC TTTTGCCATATATGT ppiC 3704675 - 3704956 + | peptidyl-prolyl cis-trans isomerase C TERM 4396 3704987 - 3704959 - T 100 -16.1 -3.24825 | overlap 3704960 3704963 GTACCGTAACTAATA GCAAGGCCTTCTC CGG GAGAAGGCCTTGA ACTCTGAATCGCTAT TERM 4397 3704986 - 3704960 - T 100 -19.6 -2.54574 | overlap 3704959 3704963 TACCGTAACTAATAG CAAGGCCTTCTC CGG GAGAAGGCCTTG AACTCTGAATCGCTA TERM 4398 3704983 - 3704963 - T 100 -15.5 -3.42147 | overlap 3704960 3704959 CGTAACTAATAGCAA GGCCTTCTC CGG GAGAAGGCC TTGAACTCTGAATCG ilvC 3706477 - 3705002 - | ketol-acid reductoisomerase TERM 4399 3705662 - 3705679 + g 73 -9.1 -3.5774 | overlap 3705674 GAGACGGTCCATCAT CAGGGTG ATGC CGCCCTG TTTCAGCGCTTCGGT TERM 4400 3706429 - 3706451 + g 70 -9.8 -3.19175 | AGCGACATTTGCCCA GCTGTGCCAG CTG CTGGCGCAGA TTCAGTGTATTGAAG TERM 4401 3706661 - 3706676 + G 83 -10.4 -4.07568 | opp_overlap 3706649 3706650 3706670 AAACCTTCCTGCATC TGGCGG AAAG CCGCCA TTTTGGCCGCAGCGC TERM 4402 3707479 - 3707463 - g 95 -9.4 -4.82901 | opp_overlap 3707463 3707475 TTGTGCGCAGAAAAA GCGGCT GCATG AGCCGC TGATTGAGGCGTTCT ilvY 3706627 - 3707517 + | DNA-binding transcriptional regulator IlvY ilvA 3709058 - 3707514 - | threonine dehydratase TERM 4403 3708791 - 3708774 - G 71 -3.3 -4.77165 | gap 1, opp_overlap 3708776, overlap 3708776 CCGCGCAGAAGAAAA CGCGACGC CCT GCG-CGTG GTTACCCGCAGAAGC TERM 4404 3708814 - 3708824 + g 79 -2.4 -5.30348 | GCAGAAGCAGTGATC ACGC CGT GCGC TTTTTGTTCTTCCGT ilvD 3710911 - 3709061 - | dihydroxy-acid dehydratase TERM 4405 3710944 - 3710965 + r 100 -12.3 -5.61913 | opp_overlap 3710944 TGTCTGTCTCGTAAA TGGGACGGT GCGT GCCGTCCCA TTTTTTGTATTTATT TERM 4406 3710965 - 3710944 - R 86 -11.6 -3.53012 | opp_overlap 3710944 TGTCTGTCTCGTAAA TGGGACGG TGCGTG CCGTCCCA TTTTTTGTATTTATT ilvE 3711905 - 3710976 - | branched-chain amino acid aminotransferase TERM 4407 3711918 - 3711935 + r 72 -5.5 -4.3767 | overlap 3711920 CATTTTTATATTCCT TTTGCGC TCAG GCGCGGA TTTGTTGTGATGTGG ilvM 3712188 - 3711925 - | acetolactate synthase 2 regulatory subunit ilvG 3713831 - 3712185 - | acetolactate synthase 2 catalytic subunit TERM 4408 3713028 - 3713017 - G 70 -5.8 -4.25283 | ACCCGGTCATCAAAA CGTG CACC CACG GCGATCAGCAAGTCG TERM 4409 3713921 - 3713948 + r 79 -11.2 -3.45366 | opp_overlap 3713923, overlap 3713923 3713946 TTTAAGGTCAAAAAA AACCCCCGGACC TTTC GGTGCGGGGGTC TTAGTTCGTTAAGGC TERM 4410 3713923 - 3713946 + r 86 -13.8 -3.29727 | opp_overlap 3713923, overlap 3713921 TAAGGTCAAAAAAAA CCCCCGGACC TTTC GGTGCGGGGG TCTTAGTTCGTTAAG TERM 4411 3713946 - 3713923 - R 100 -13.8 -5.81032 | opp_overlap 3713923 3713921 TAAGGTCAAAAAAAA CCCCCGGACC TTTC GGTGCGGGGG TCTTAGTTCGTTAAG ilvL 3714069 - 3713971 - | ilvG operon leader peptide TERM 4412 3715037 - 3715025 - H 72 -10.5 -2.93357 | overlap 3715022 AAGGACTGGAAATTA CCGCC GCT GGCGG GCACAACCTTTTACT TERM 4413 3715965 - 3715940 - g 71 -3.3 -4.74518 | gap 1, opp_overlap 3715948, overlap 3715941 3715955 AACGACGAAAACAAA CTCAGGTC-GCT AAT ATCTGACCTGAA ACAACATGGTCAGAT TERM 4414 3716945 - 3716973 + G 71 -3.2 -4.82901 | AGACGACGCTGCGAC GTTCTGTTCGC-CA TGA TGCGCGA-CGGGAC TTTTTATACCCCGCA SDY_3983 3715802 - 3716998 + | ISSfl2 ORF TERM 4415 3717074 - 3717045 - T 83 -9.3 -4.26076 | opp_overlap 3717073 GCATTTTGAGTAAAA CGGTAGTGCCG GGAGAAAG CAGCACCACCG TTAAACAACGTGTAA TERM 4416 3717385 - 3717397 + T 85 -6.2 -5.15167 | opp_overlap 3717385, overlap 3717379 ACTGACATAAAAAAA GGGC ATTTC GCCC TTTTTATTAATCGTC TERM 4417 3717397 - 3717385 - T 93 -6.9 -5.72616 | opp_overlap 3717385 3717379 ACTGACATAAAAAAA GGGCA TTT CGCCC TTTTTATTAATCGTC yifE 3717742 - 3717404 - | hypothetical protein TERM 4418 3718503 - 3718486 - g 72 -9.9 -3.31144 | TGCCCATTCTGACAA CCAGTTC TGCT GAACTGG CACAGCAACAGATTG yifDA 3717861 - 3718700 + | transcriptional regulator HdfR TERM 4419 3718787 - 3718768 - f 100 -10.8 -5.71712 | opp_overlap 3718765 3718768 TTTCAGATAAAAAAA TCCTTAGC TTTC GCTAAGGA TGATTTCTGGCAGGG TERM 4420 3718768 - 3718787 + F 73 -10.8 -3.00946 | opp_overlap 3718768, overlap 3718765 TTTCAGATAAAAAAA TCCTTAGC TTTC GCTAAGGA TGATTTCTGGCAGGG TERM 4421 3719140 - 3719161 + F 74 -8.7 -3.91196 | opp_overlap 3719131 GCAAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 4422 3721626 - 3721638 + F 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 4423 3722397 - 3722411 + F 72 -5.7 -4.41177 | overlap 3722388 3722385 GTATCAGTCTGCTTC GCAAG ACTGC CTTGC TTTTCACTTTCTATC yieP 3724491 - 3725183 + | yieP gene product yieO 3725206 - 3726633 + | putative transport protein rbsR 3727591 - 3726641 - | transcriptional repressor RbsR TERM 4424 3727571 - 3727555 - G 90 -11.5 -3.91897 | opp_overlap 3727553, overlap 3727556 CTGTTGAGGTAGAAA CGCCCGC CAG GCGGGCA ACATCTTTCATTGTA TERM 4425 3727570 - 3727556 - G 78 -12.8 -2.94924 | opp_overlap 3727553, overlap 3727555 TGTTGAGGTAGAAAC GCCCGC CAG GCGGGC AACATCTTTCATTGT rbsK 3728524 - 3727595 - | ribokinase TERM 4426 3728568 - 3728544 - R 90 -9.9 -4.38712 | opp_overlap 3728540 3728537, overlap 3728545 GGGATGTCCATAAAA TGCGCCACCGT GTT AGGGTGGCGCG TGCCCTGCTTTTCTT TERM 4427 3728567 - 3728545 - R 83 -13.4 -3.22906 | opp_overlap 3728540 3728537, overlap 3728544 GGATGTCCATAAAAT GCGCCACCGT GTT AGGGTGGCGC GTGCCCTGCTTTTCT rbsC 3730526 - 3729561 - | ribose ABC transporter permease protein SDY_3998 3731029 - 3730634 - | iso-IS1 ORF2 TERM 4428 3732745 - 3732756 + r 71 -7.2 -4.07568 | GACATTTAACGCAGC GCCC GAGA GGGC TTTTACGCCCGGGAA TERM 4429 3732879 - 3732849 - R 75 -11.3 -3.00907 | gap 1, overlap 3732841 3732839 3732844 GCACAGAGAATGATA TTCGCATACGGAGA ACAT TCTCCGC-TGCGAA TTACCGCCTGACTTT TERM 4430 3733396 - 3733372 - R 100 -9.3 -5.50723 | CCATGAAAACAAAAA CGCCCCCTT ATGAAGA AAGGAGGCG TCTGGCGTTAGATTT trkD 3735278 - 3733404 - | potassium transport protein Kup TERM 4431 3734386 - 3734366 - G 71 -10.5 -2.92851 | overlap 3734357 3734369 AAAAGACGCCAGAGA TAACCGCCT GCG AGGCGATTA CCGTCGCCAGTGCGG TERM 4432 3735149 - 3735126 - G 76 -3.8 -4.88736 | overlap 3735134 3735135 GATCAGCGATAAAAA GCCAAACACG GCAT CGCGTTCAAC GCCAAAACCAAACTG TERM 4433 3735350 - 3735336 - H 79 -4.2 -5.24129 | overlap 3735337 TTGGCCCACAAAAAA GCGCAC AGT ATGCAC GATTAACGGCAAAAT yieN 3735477 - 3736997 + | regulatory ATPase RavA yieM 3736991 - 3738442 + | hypothetical protein asnA 3739439 - 3738447 - | asparagine synthetase AsnA TERM 4434 3739130 - 3739185 + g 73 -11.3 -2.75074 | gap 2 ACGGAGAAAGACGGT CTTCATCG-GGGCGAAGGGCT-TTCAT GTGC GTGTACAACCCTTCGCCCGCGCTGAAG TCGTGTTGCCCTAAG TERM 4435 3739397 - 3739386 - G 70 -4.4 -4.46926 | CAGTTGACGAGAAAA GTGA GATT TCAC GAAGCTAATTTGGCG asnC 3739591 - 3740049 + | DNA-binding transcriptional regulator AsnC mioC 3740139 - 3740582 + | flavodoxin gidA 3740961 - 3742850 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 4436 3742889 - 3742862 - f 100 -18.6 -4.77759 | overlap 3742852 3742851 ATAACGCATTAAAAA TGCCTGGTAAGC ACCC GCTTACCAGGCA ACGCATCAAGAACAG gidB 3742914 - 3743537 + | glucose-inhibited division protein B TERM 4437 3743625 - 3743662 + F 86 -5.2 -5.52384 | gap 3, overlap 3743620 CTGGTTACATTTAAC GCCACGTTCACTCTT-TTG CAT CAACAAGA-T-AACGTGGC TTTTTTTGGTAAGCA TERM 4438 3744352 - 3744380 + G 70 -10.9 -2.7264 | opp_overlap 3744349 3744352 3744358, overlap 3744351 3744375 CAGGCGCATACACCA GCGAAAGGCCGGG TGG CCTGGACATTCGC ATTTGGCGAAGCTTT atpI 3744154 - 3744534 + | F0F1 ATP synthase subunit I TERM 4439 3744856 - 3744876 + G 74 -11.1 -3.17051 | overlap 3744854 TGATTGCTCCGCTGG CCCTGACGA TCT TCGTCTGGG TATTCCTGATGAACC atpB 3744543 - 3745358 + | F0F1 ATP synthase subunit A atpE 3745405 - 3745644 + | F0F1 ATP synthase subunit C TERM 4440 3745805 - 3745777 - g 73 -11.8 -2.77899 | gap 1, overlap 3745774 GTTCTGCATGAAGTA CGTATGGCCGCCA TTAA TGGCAGCCAT-CG AAAAACGTCAAAAAG TERM 4441 3745832 - 3745811 - g 70 -3.7 -4.67353 | GCAGCCATCGAAAAA CGTCAAAAA GAAA TTGCTGACG GCCTTGCTTCCGCAG atpF 3745706 - 3746176 + | F0F1 ATP synthase subunit B atpH 3746191 - 3746724 + | F0F1 ATP synthase subunit delta TERM 4442 3747299 - 3747263 - g 77 -8.7 -4.13014 | overlap 3747264 GCCAGACCGGTAAAA CCGCACTGGCTATCGAT GCC ATCATCAACCAGCGCGA TTCCGGTATCAAATG atpA 3746737 - 3748278 + | F0F1 ATP synthase subunit alpha TERM 4443 3748504 - 3748471 - g 100 -14.7 -3.91897 | opp_overlap 3748471 GTCCTTATGCAGAAA CCATGCGCAAAGTGA TTGG TCACCTTGCACACGG TAATCTGGAATACAA atpG 3748329 - 3749192 + | F0F1 ATP synthase subunit gamma TERM 4444 3749452 - 3749429 - g 76 -7.4 -4.18018 | GGTCTGGATGTAAAA GACCTCGAAC ACCC GATCGAAGTC CCGGTAGGTAAAGCG atpD 3749219 - 3750601 + | F0F1 ATP synthase subunit beta atpC 3750622 - 3751041 + | F0F1 ATP synthase subunit epsilon TERM 4445 3751090 - 3751059 - f 73 -10.2 -3.08032 | opp_overlap 3751064, overlap 3751064 CCGGCTTGAAAAGCA CAAAAGCCAGTCTG GAAA CAGGCTGGCTTTTT TTTGCGCGTGTGACC TERM 4446 3751085 - 3751064 - f 93 -10.1 -4.67635 | opp_overlap 3751064, overlap 3751059 TTGAAAAGCACAAAA GCCAGTCTG GAAA CAGGCTGGC TTTTTTTTGCGCGTG TERM 4447 3751064 - 3751085 + F 100 -12.3 -5.76949 | opp_overlap 3751064 3751059 TTGAAAAGCACAAAA GCCAGTCTG GAAA CAGGCTGGC TTTTTTTTGCGCGTG TERM 4448 3752143 - 3752131 - g 84 -7.7 -4.62302 | opp_overlap 3752131 GAACAGGCTGAAAAA CTGCT GTT AGCAG GAGTTATGCTGCGCG TERM 4449 3752155 - 3752168 + G 70 -5.2 -4.34402 | overlap 3752154 GCAGGAGTTATGCTG CGCG ATCCGG CGCG TTTTGATCTGCGCGG glmU 3751393 - 3752763 + | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase TERM 4450 3753756 - 3753722 - g 71 -2.8 -4.74801 | gap 1, opp_overlap 3753739, overlap 3753725 GAACGCGATCAAAAA CACCCTTACCG-GAC GCATCA GCCACGGTCAGGTTG ATTTAAGCGAGCTGG glmS 3752925 - 3754754 + | D-fructose-6-phosphate amidotransferase TERM 4451 3754796 - 3754777 - T 77 -10.6 -3.34013 | opp_overlap 3754777 CATTTGCTGAACGAA GGGCTGCC TTTT GGCGGCCC TTTTACTTACCAGCA TERM 4452 3754777 - 3754796 + T 100 -12.8 -4.4078 | opp_overlap 3754777 CATTTGCTGAACGAA GGGCTGCC TTTT GGCGGCCC TTTTACTTACCAGCA SDY_4020 3756363 - 3755155 - | IS1294 orf TERM 4453 3755471 - 3755483 + g 73 -9.1 -3.66095 | CTCGCGACCAGCTCA CGCTG TGT CAGCG TTTCCGTCGCCGTTT TERM 4454 3755567 - 3755581 + g 73 -9.2 -3.65046 | TGTGCCAGCCGGGAG GCCGCT ATC GGCGGC TTCTTCAGATAACGA TERM 4455 3756102 - 3756112 + g 79 -4.6 -5.00616 | overlap 3756097 3756096 GTGTCGCTATCCACA GGTC TGT GGCC TTTTTTCCGCAGGAC SDY_4021 3756616 - 3756344 - | hypothetical protein TERM 4456 3757639 - 3757621 - g 72 -4.6 -4.67982 | opp_overlap 3757611, overlap 3757622 TCCGACCGAAGAAAA CTTCGCTA ATG TAGCAAAA GGCGCAGACTGGAGC pstS 3756878 - 3757918 + | phosphate transporter subunit pstC 3758004 - 3759005 + | phosphate transporter permease subunit pstA 3759005 - 3759895 + | phosphate transporter permease subunit pstB 3760078 - 3760851 + | phosphate transporter subunit phoU 3760866 - 3761591 + | transcriptional regulator PhoU TERM 4457 3761862 - 3761847 - f 100 -2.5 -6.55664 | opp_overlap 3761849 GAAAAGAAAAAAAAA CAGGG TAAAAG CCCTA TATCGAGACATAAGA TERM 4458 3762875 - 3762861 - g 83 -5.7 -5.03961 | opp_overlap 3762859 3762861 AACCAAATAATAAAA TACCG ATTTA CGGTA TGTTTAAAGGGTGTT SDY_4027 3762014 - 3763675 + | hypothetical protein SDY_4028 3763990 - 3764493 + | hypothetical protein insA 3764736 - 3765011 + | IS1 ORF1 insB 3765056 - 3765433 + | IS1 ORF2 TERM 4459 3766144 - 3766166 + F 72 -8.6 -3.7108 | opp_overlap 3766143 3766146 TATCAAGGTTAACAT CATGAAATGT CGA ATATTTCATG TTTGCATGTGAAAAT SDY_4031 3766545 - 3766883 + | iso-IS1 ORF2 TERM 4460 3767053 - 3767042 - g 70 -5.8 -4.17425 | AGAACTATTTGAAAA GCAG CAAA CTGC CATCATAAGTAGTAC TERM 4461 3767434 - 3767424 - g 81 -8.2 -4.35518 | AATCTGACATTAAAA GGCG TTT CGCC TAATAACCTGAAGTA SDY_4032 3766941 - 3767534 + | putative lipoprotein TERM 4462 3767559 - 3767539 - f 100 -4.7 -6.07374 | opp_overlap 3767543, overlap 3767544 ATAAAAAATAAAAAA TAAATGCAG CTT CTGCGCTTA TATCAAGGAATAGAG SDY_4033 3767585 - 3768784 + | hypothetical protein TERM 4463 3769633 - 3769607 - g 72 -5 -4.72272 | opp_overlap 3769607 3769606 GCGTCGCATCAAAAA CCAGTGCAGAAG CAG CTATTGCCCTGG GTTATAACAGCTTTG SDY_4034 3769333 - 3771840 + | hypothetical protein SDY_4035 3771929 - 3772765 + | hypothetical protein TERM 4464 3772946 - 3772921 - f 79 -11.9 -3.28745 | opp_overlap 3772921, overlap 3772916 GGGTCAACAATCTAA GGGCAATTCTC TGAT GAGGATTGCCC TTTTCTTTACCAGAC TERM 4465 3772921 - 3772946 + F 100 -14.1 -4.86731 | opp_overlap 3772921 3772916 GGGTCAACAATCTAA GGGCAATTCTC TGAT GAGGATTGCCC TTTTCTTTACCAGAC lldP 3773192 - 3774847 + | L-lactate permease TERM 4466 3775405 - 3775417 + G 80 -5.5 -5.02074 | CGTCAGCGGATGTAT CTGGT GCC ACCGG TTTTTTCACAACTGA lldR 3774847 - 3775623 + | DNA-binding transcriptional repressor LldR TERM 4467 3775736 - 3775718 - g 72 -11 -3.05343 | overlap 3775720 TGCATATTCTGAATA CACGCTGC GCC GCAACGTG GAAGATTTGTCAGAA lldD 3775620 - 3776810 + | L-lactate dehydrogenase TERM 4468 3776972 - 3776994 + F 77 -12 -2.79302 | opp_overlap 3776960 CAATTTTCTGCTATC CTGCCCCC GCACTAA GGGGGCAG TATGCTAAACATCGT TERM 4469 3777366 - 3777354 - g 85 -3.3 -5.4505 | overlap 3777355 CCGCTGAACAAAAAA TTCGG ATT CCGAT GGTGCCTGACAGCCG yibK 3776996 - 3777469 + | putative tRNA/rRNA methyltransferase YibK cysE 3778343 - 3777522 - | serine acetyltransferase TERM 4470 3778397 - 3778368 - R 82 -11.5 -3.56987 | gap 1, overlap 3778371 CACACGATGAGATAA TGA-CCGGCCCG TTCTGCG CGGGCCGGGTCA TAGCGGTAACAAAGG TERM 4471 3778393 - 3778371 - R 82 -13.4 -2.90888 | overlap 3778368 ACGATGAGATAATGA CCGGCCCG TTCTGCG CGGGCCGG GTCATAGCGGTAACA gpsA 3779442 - 3778423 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 4472 3779336 - 3779362 + g 78 -8.7 -4.25056 | gap 1 ATATGTTCAGGGTCA TGGCCCCAGAGG ACAA CCTC-GTGGCCA TTTCTTGCTAAGGTA TERM 4473 3779440 - 3779456 + g 81 -10.9 -3.69283 | overlap 3779451 AGCATTACGTTGGTT CATCAGG CAT CCTGATG TTCTTCAGTACCTTC secB 3779909 - 3779442 - | preprotein translocase subunit SecB grxC 3780223 - 3779972 - | glutaredoxin 3 yibN 3780796 - 3780365 - | hypothetical protein yibO 3781041 - 3782585 + | phosphoglyceromutase TERM 4474 3782667 - 3782693 + G 100 -17.4 -3.81022 | opp_overlap 3782656, overlap 3782688 ATCATGCCCATCATC TACGCCAGCGTT CTT AGCGCTGGCGTA TTGTTGTGCGCCTTT TERM 4475 3782987 - 3782949 - g 75 -5 -4.77036 | overlap 3782934 3782951 CTGGAGCAGCAAAAA GCCGCCCAGGAGCGCAGC CTC GCCGCACAACTGGATGCC GCATTCCGTCAGGGC yibP 3782595 - 3783878 + | hypothetical protein TERM 4476 3784014 - 3784004 - f 77 -6.8 -4.48987 | opp_overlap 3783986 CCCGCACAACGAAAA CCAG GTG CTGG CGATGCCTTCCGCTA yibQ 3784008 - 3784841 + | hypothetical protein yibD 3785851 - 3784847 - | glycosyl transferase TERM 4477 3786063 - 3786080 + r 93 -12.7 -3.83155 | opp_overlap 3786063 TATCCTCAGATAAAA GGGCTGG AATA CCAGCCC TTGTTCGTGTTAATC TERM 4478 3786080 - 3786063 - R 100 -12.7 -4.53303 | opp_overlap 3786063 TATCCTCAGATAAAA GGGCTGG AATA CCAGCCC TTGTTCGTGTTAATC tdh 3787115 - 3786090 - | L-threonine 3-dehydrogenase TERM 4479 3786938 - 3786955 + g 74 -2.7 -5.00884 | ATTCATGGCCCACGA CCATC GGCACCGG GATGG TTTTTTGCGACCACT kbl 3788321 - 3787125 - | 2-amino-3-ketobutyrate coenzyme A ligase TERM 4480 3788956 - 3788940 - g 81 -6.5 -4.77036 | opp_overlap 3788940 CGCGAGTACGAAAAA CCGTTGA ACG TCTACGG TTACTCAAAATTCCT rfaD 3788535 - 3789467 + | ADP-L-glycero-D-mannoheptose-6-epimerase TERM 4481 3789578 - 3789605 + G 76 -9.2 -3.7941 | gap 1, opp_overlap 3789575 3789578 CCAGGCGATAATCGA TGTGATGGCACCG GCA TGGTGCCGTC-CA TTATTATCGCGGATG rfaF 3789477 - 3790523 + | ADP-heptose:LPS heptosyltransferase II TERM 4482 3790763 - 3790743 - g 70 -5.3 -4.36914 | overlap 3790744 3790755 TCGGCCCCCATAAAA GCGGAACGC AAA GCGTTTCGT GAAGCGCTACAAGCA rfaC 3790527 - 3791486 + | ADP-heptose:LPS heptosyl transferase I TERM 4483 3791519 - 3791491 - T 91 -11.1 -4.2123 | opp_overlap 3791493 3791497, overlap 3791493 CATTGATTTAATAAA TAGTAAGTGGGCA TTA TACCCACTTACTT AATCAACGTTTTTAT TERM 4484 3791493 - 3791517 + T 77 -11.5 -3.1883 | opp_overlap 3791491 3791493, overlap 3791497 TTGATTTAATAAATA GTAAGTGGGCA TTA TACCCACTTAC TTAATCAACGTTTTT TERM 4485 3791517 - 3791493 - T 100 -13.7 -3.70307 | opp_overlap 3791493 3791497, overlap 3791491 TTGATTTAATAAATA GTAAGTGGGCA TTA TACCCACTTAC TTAATCAACGTTTTT waaL 3792787 - 3791534 - | lipid A-core:surface polymer ligase WaaL waaX 3793595 - 3792822 - | putative beta1,4-galactosyltransferase WaaX TERM 4486 3793200 - 3793184 - G 71 -2.9 -4.74801 | TAACTTTACTAAAAA GGCTTTG CCC CAATACC GGATAATCATGTAAT TERM 4487 3793517 - 3793507 - G 71 -2.6 -4.94243 | TCAAAAAAATCAAAA TTAA TAT TTAA TCGCTGAAAAACATC waaW 3794655 - 3793627 - | UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase TERM 4488 3794010 - 3793990 - G 74 -7.7 -4.05529 | ACAATGACCAAAGAA CAGAATATT TAA AATATCCTG ATCAAGGCATTTATA TERM 4489 3794154 - 3794169 + g 78 -5.4 -4.7497 | gap 1 GAAGTCCCTCTATAG CCAGACG CTT CG-CTGG TTTTTCCTGCATAAA TERM 4490 3794576 - 3794557 - G 90 -5 -5.33405 | overlap 3794558 CGCACCAAATAAAAA GTTACGGT CAAT ACCGTAAG CGATATTTAACACAC TERM 4491 3794575 - 3794558 - G 72 -8.5 -3.78958 | overlap 3794557 GCACCAAATAAAAAG TTACGGT CAAT ACCGTAA GCGATATTTAACACA rfaY 3795373 - 3794681 - | lipopolysaccharide core biosynthesis protein rfaJ 3796378 - 3795383 - | lipopolysaccharide 1,2-glucosyltransferase rfaI 3797411 - 3796395 - | lipopolysaccharide 1,3-galactosyltransferase TERM 4492 3796438 - 3796420 - G 84 -4 -5.27938 | opp_overlap 3796399 ATCTTTAAATAAAAA TAATAAAT ATA ATTCATTA TCCCGTTAATTGGTT waaP 3798233 - 3797427 - | putative LPS biosynthesis enzyme TERM 4493 3797622 - 3797600 - G 77 -2.7 -5.05606 | TCGAAGAAAAATAAA GCCCAATAA GATCT TTATCGCGC CAACGACGTGGAACG rfaG 3799341 - 3798217 - | glucosyltransferase I waaQ 3800396 - 3799338 - | lipopolysaccharide core biosynthesis protein TERM 4494 3801415 - 3801402 - g 74 -3.1 -5.00616 | GCTGGGCGCAAAAAA CAATC AAGT GACTG TTACCGGTAGCCTGA kdtA 3800809 - 3802086 + | 3-deoxy-D-manno-octulosonic-acid transferase coaD 3802094 - 3802573 + | phosphopantetheine adenylyltransferase mutM 3803421 - 3802612 - | formamidopyrimidine-DNA glycosylase TERM 4495 3803472 - 3803501 + r 93 -15.1 -3.05384 | opp_overlap 3803472 3803479, overlap 3803479 3803496 GGGGCAGGCAGATAA CGAAAAACCCCGC CGTA GCGAGGTTTTTCG TTACATCAAAGCGAA TERM 4496 3803501 - 3803472 - R 100 -17.3 -3.51924 | opp_overlap 3803472 3803479 3803496, overlap 3803479 GGGGCAGGCAGATAA CGAAAAACCCCGC CGTA GCGAGGTTTTTCG TTACATCAAAGCGAA TERM 4497 3803479 - 3803494 + r 78 -6 -4.88407 | opp_overlap 3803479 3803472, overlap 3803472 GCAGATAACGAAAAA CCCCGC CGTA GCGAGG TTTTTCGTTACATCA TERM 4498 3803494 - 3803479 - R 91 -8.2 -4.96646 | opp_overlap 3803472 3803479, overlap 3803472 GCAGATAACGAAAAA CCCCGC CGTA GCGAGG TTTTTCGTTACATCA TERM 4499 3803512 - 3803533 + r 76 -8.1 -4.09117 | opp_overlap 3803512, overlap 3803496 TTTCGTTACATCAAA GCGAAAATT ATTT GATTTTCGC TTCTTTGTAGATCAC rpmG 3803686 - 3803519 - | 50S ribosomal protein L33 TERM 4500 3803563 - 3803587 + g 70 -3.6 -4.62872 | gap 1, opp_overlap 3803563 CGTGCTGGCGAACAA CTGGATC-GAA TTTT TTCAGTTCCAG TTTTTCCGGCTTAGT rpmB 3803943 - 3803707 - | 50S ribosomal protein L28 TERM 4501 3804147 - 3804134 - R 72 -6.7 -4.2074 | overlap 3804137 TCCCGAACAGACAAA GATCC CGAA GGATC GCGCATAGCGGGTTA radC 3804834 - 3804160 - | DNA repair protein RadC dfp 3805000 - 3806220 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 4502 3806530 - 3806558 + G 77 -3 -5.08601 | opp_overlap 3806534, overlap 3806535 3806545 GGACAGCTTCACCAT TCAACCTGGCGA ACGCA TCGCCCAGATGA TTTTTGTTCCGGTAG dut 3806201 - 3806656 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 4503 3806709 - 3806689 - f 76 -11.9 -2.50817 | overlap 3806688 3806686 3806684 AACGTCATAACATAG CCGCAAACA TTT CGTTTGCGG TCATAGCGTGGGTGC slmA 3806763 - 3807359 + | nucleoid occlusion protein TERM 4504 3807398 - 3807372 - T 86 -11.7 -3.53761 | gap 1, opp_overlap 3807373 3807373 3807374, overlap 3807373 3807386 TAATTCTCCCCTAAA CGGTCAGGCAGA AACG TCTGCCTGAC-G CTTTTCTTACCCTGC TERM 4505 3807373 - 3807399 + T 100 -11.7 -4.65916 | gap 1, opp_overlap 3807372 3807373 3807386, overlap 3807373 3807374 AATTCTCCCCTAAAC G-GTCAGGCAGA AACG TCTGCCTGACGC TTTTCTTACCCTGCA TERM 4506 3807373 - 3807398 + T 82 -11.9 -3.39068 | opp_overlap 3807372 3807373 3807386, overlap 3807373 3807374 AATTCTCCCCTAAAC GGTCAGGCAGA AACG TCTGCCTGACG CTTTTCTTACCCTGC TERM 4507 3807398 - 3807373 - T 76 -11.9 -2.72043 | opp_overlap 3807373 3807373 3807374, overlap 3807372 3807386 AATTCTCCCCTAAAC GGTCAGGCAGA AACG TCTGCCTGACG CTTTTCTTACCCTGC TERM 4508 3807374 - 3807397 + T 90 -15.4 -2.62958 | opp_overlap 3807372 3807373 3807386, overlap 3807373 3807373 ATTCTCCCCTAAACG GTCAGGCAGA AACG TCTGCCTGAC GCTTTTCTTACCCTG SDY_4072 3808197 - 3807688 - | putative RNA-directed DNA polymerase, msDNA specific pyrE 3809292 - 3808651 - | orotate phosphoribosyltransferase TERM 4509 3809350 - 3809333 - R 100 -11.3 -6.06529 | TACAGACAAAAAAAA GGCGACT CATC AGTCGCC TTAAAAATCAGTTTG rph 3810074 - 3809358 - | ribonuclease PH yicC 3810201 - 3811064 + | hypothetical protein TERM 4510 3811102 - 3811125 + F 72 -3.1 -5.06414 | gap 1, opp_overlap 3811102, overlap 3811106 TTCCGCCTTCACAAA TGCCGCCACT CAAAC AG-AGCGGCA TTTTTCTTCCCCGCA TERM 4511 3811671 - 3811683 + G 75 -4.8 -4.83615 | opp_overlap 3811662 AGGCAACTTCGTGAA GACG AAAAG CGTC TTTTTCTGAGAAATG dinD 3811284 - 3812108 + | DNA-damage-inducible protein D TERM 4512 3812976 - 3812988 + G 74 -2.6 -5.14563 | GCGCTACGTCTTAAG CTGG GATTA CCGG TTTTTTACTACAGCC yicG 3812346 - 3813017 + | hypothetical protein TERM 4513 3813037 - 3813062 + T 80 -9.7 -3.89354 | CAAAACCTGTGATCT GCTGGGCGG CCAGCCAA CTGCCCAGC TTCTTGATTTGCGCA SDY_4079 3814816 - 3814553 - | hypothetical protein TERM 4514 3815005 - 3815017 + G 82 -9.1 -4.15044 | opp_overlap 3815001 3815005 GCGCGGGTAAATCCA GCCTG ATT CAGGC TTTATTAAAAACCCA gmk 3814950 - 3815573 + | guanylate kinase rpoZ 3815628 - 3815903 + | DNA-directed RNA polymerase subunit omega TERM 4515 3816478 - 3816460 - g 70 -5.2 -4.371 | opp_overlap 3816460, overlap 3816454 TCCACCACATTAAAA CCGAACTC GAA GAGCTGGG TTTTGAGGCGCTGTA TERM 4516 3816996 - 3816979 - g 72 -7.7 -3.90318 | gap 1 GTACTACCGCACAAA TCC-GCGC CCA GCGCTGGA TGCAAAGCCTGCTGG spoT 3815922 - 3818030 + | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase spoU 3818037 - 3818726 + | tRNA guanosine-2'-O-methyltransferase TERM 4517 3820549 - 3820530 - g 90 -10 -4.36914 | overlap 3820546 TGCTGCTCTATAAAA CGCCGCTT TCTA AAACGGCG CAAATTCGCCTGCAA recG 3818732 - 3820813 + | ATP-dependent DNA helicase RecG TERM 4518 3820959 - 3820980 + T 77 -11.5 -3.21912 | GCATTTGTCTTTGTT GCGGCGGCA CTTC TACCGCCGC TTCATCGGTTAACCC gltS 3822194 - 3820989 - | glutamate transport TERM 4519 3821858 - 3821868 + g 72 -6.8 -4.18018 | GGCTAGCCATCCCAA TGCC AAT GGCA TTTTGCATCACCAAC TERM 4520 3822407 - 3822418 + H 73 -4.4 -4.80455 | TTAGATGAGGATGTG GCAA ACGT TTGC TTTTCTCTTTCGGTC TERM 4521 3822519 - 3822502 - g 90 -9.9 -4.42386 | CCTCGAGTCAGAAAA TGCGCAA CCGG TTGCGCA GACTCAAAACAGCGA TERM 4522 3823406 - 3823394 - g 76 -9.1 -3.83026 | opp_overlap 3823393, overlap 3823403 CCGCTGTACATGAAA CGCCT GAA AGGCG GTGTGCTGGCAAACG TERM 4523 3823741 - 3823754 + G 72 -6.7 -4.24002 | overlap 3823721 TGGTCTGGGCGTGTC TCAGC AGCC GCTGA TTTTGCAGTTTGCCC yicE 3822473 - 3823864 + | putative transport protein TERM 4524 3823871 - 3823859 - f 73 -4.1 -4.91109 | opp_overlap 3823838, overlap 3823865 3823866 3823869 TTCCCACCAGAAAAA CAGTA ATT CACTG GCGGCGGTAAGATAA TERM 4525 3823898 - 3823869 - f 81 -13 -2.63644 | gap 1, overlap 3823859 3823866 3823865 AAAAACAGTAATTCA CTGGCGGCGGTAA GATAA TTACCGCCGC-AG TCTCACCTCTTTCAC TERM 4526 3824283 - 3824229 - g 72 -4.8 -4.72272 | CCCTGGTAGCAAAAA GTGTCGACATTGCGCTAAGCAGTCGG CAA CTGACCGAACCACGCCATGTCGATAC CATCCTGCTGGAAAA yicH 3823985 - 3825694 + | hypothetical protein TERM 4527 3825705 - 3825733 + F 88 -14.5 -3.08312 | opp_overlap 3825703 3825702 AGTAAACATCAATCT CGCCGGGTACGAC TCA GACGTACCCGGCA TTCCATCAATAGATT SDY_4089 3826217 - 3826519 + | IS600 ORF1 SDY_4090 3826660 - 3827373 + | IS600 ORF2 melA 3829519 - 3828164 - | alpha-galactosidase TERM 4528 3828274 - 3828299 + g 76 -7.6 -4.18494 | gap 1 TATGCGGGTCCATCA TCGCGG-CGTG GTAAA CACGGTCGCGA TTTTCCGTAAGAATA TERM 4529 3828877 - 3828834 - G 80 -11.6 -3.28712 | opp_overlap 3828833 3828867, overlap 3828867 TGCCCTGCGTCATAA GCCGCCAGCAGTTCCGGGTA GAGA TTCACGTAACTGCCGTCGGC GGTTTTGCGCTCCAG TERM 4530 3828867 - 3828879 + g 70 -6.9 -4.13945 | opp_overlap 3828834 3828867, overlap 3828833 TAGAGATTCACGTAA CTGCC GTC GGCGG TTTTGCGCTCCAGCT TERM 4531 3829598 - 3829651 + H 80 -12.2 -2.94144 | gap 3, opp_overlap 3829608, overlap 3829596 CTTCCAGGTTGAGCA TTCCCATAAACTCAGA--TCCTGCGTG AAG CA-GCAGTAAATCTGAGTTTATGGGAA TAATTTACCTGAAAA TERM 4532 3830245 - 3830234 - H 70 -2.2 -5.03994 | gap 1, opp_overlap 3830241 3830243 GCGCACACACAAAAA CAGCG TCT CGC-G CCATGCGCAATTTTA TERM 4533 3830241 - 3830255 + H 74 -5.6 -4.66537 | opp_overlap 3830234, overlap 3830243 CACAAAAACAGCGTC TCGCGC CAT GCGCAA TTTTATGTTAGCCAG TERM 4534 3831914 - 3831924 + G 70 -6.8 -4.07687 | opp_overlap 3831914 ACCTGGCGATCACAA CGGT CCT ACCG TTTTCGCCACCCACT TERM 4535 3832250 - 3832239 - g 70 -5.8 -4.20367 | CCGTGGAACAAAGAA GTCG TCAC CGAC CCACAAACCGGCAAA TERM 4536 3832458 - 3832447 - g 72 -7.2 -4.20918 | opp_overlap 3832457 GTGAACTGGAAGAAA CCGG TGTT CCGG CGGCGCTGGTCACTG TERM 4537 3832745 - 3832727 - g 90 -7.4 -4.86731 | CTGGCTGAAAGAAAA CAACCCTG GCG CACGGTTG AACGAAGCCTATTCC adiA 3830790 - 3833060 + | biodegradative arginine decarboxylase TERM 4538 3833109 - 3833119 + F 79 -8.2 -4.21908 | overlap 3833105 AACATTACGCCGCCT GGCC TTA GGCC TTTTGGGTGATGCTG insA 3833180 - 3833455 + | IS1 ORF1 insB 3833500 - 3833877 + | IS1 ORF2 TERM 4539 3833955 - 3833973 + F 100 -8.8 -5.85178 | AATGTCATACTTTTT GCGCGG CCCCACC CCGCGC TTTTTTTTGCCTGTT TERM 4540 3834832 - 3834842 + G 75 -5.4 -4.69487 | opp_overlap 3834830 3834832 CCTGCGGCTACAACA GTAC GTC GTAC TTTATTTCTGTCTTT adiY 3834162 - 3834923 + | putative ARAC-type regulatory protein TERM 4541 3835094 - 3835126 + G 80 -12 -3.33162 | overlap 3835097 CTCACAAAGTGGGCT TAATCCCCGTCACC CTGAT GGTGTCGGGGAATA TTATGGGGTCAGGTG TERM 4542 3835097 - 3835123 + G 84 -13.7 -2.53822 | overlap 3835094 ACAAAGTGGGCTTAA TCCCCGTCACC CTGAT GGTGTCGGGGA ATATTATGGGGTCAG yjdE 3835060 - 3836397 + | arginine:agmatin antiporter TERM 4543 3836420 - 3836453 + F 90 -9.7 -4.54727 | opp_overlap 3836424, overlap 3836424 TAATCCAGCAAAGAT AAAAGCCAACCTTAA GAAC TTAAGGTTGGCTTAA TTTTGCTTTGCGAGC TERM 4544 3836449 - 3836424 - f 100 -14.9 -4.82128 | opp_overlap 3836424 3836420 CCAGCAAAGATAAAA GCCAACCTTAA GAAC TTAAGGTTGGC TTAATTTTGCTTTGC TERM 4545 3836424 - 3836449 + F 100 -14.9 -3.78998 | opp_overlap 3836424, overlap 3836420 CCAGCAAAGATAAAA GCCAACCTTAA GAAC TTAAGGTTGGC TTAATTTTGCTTTGC yjdB 3836456 - 3838144 + | putative cell division protein basS 3838799 - 3839890 + | sensor protein BasS/PmrB TERM 4546 3839915 - 3839896 - T 72 -5 -4.65722 | gap 1, overlap 3839898 CCAGATATAAAGAAA GC-TGCTGA CCA CCAGCACGC TGAACACGGTAGTTA proP 3841569 - 3840067 - | proline/glycine betaine transporter yjcZ 3842678 - 3841833 - | hypothetical protein TERM 4547 3844173 - 3844185 + H 74 -3.4 -5.03314 | GAGGCGCGTGCCAGC TGCT GGTTA AGCA TTTTTTGCAGATGCG insA 3844513 - 3844788 + | IS1 ORF1 insB 3844833 - 3845210 + | IS1 ORF2 insB 3846175 - 3845798 - | IS1 ORF2 insA 3846495 - 3846220 - | IS1 ORF1 TERM 4548 3846837 - 3846849 + H 100 -9.1 -5.08011 | AATTGCGGCCTTTTT CGGCA ATC TGCCG TTTTTTGGCGCTTTT phnA 3846892 - 3847227 + | hypothetical protein TERM 4549 3847310 - 3847255 - f 86 -13.3 -3.33261 | gap 2, opp_overlap 3847255 3847256 3847289 3847298, overlap 3847256 CGGTAAGCCGGATAA GGCGCTC-GCGCCGCATCCGGCAA-CG ATGC CGACTGCCTGATGCGACGCTGACCGCG TCTTATCAGGCTTCC TERM 4550 3847309 - 3847256 - f 95 -16.8 -2.59742 | gap 2, opp_overlap 3847255 3847256 3847289 3847298, overlap 3847255 GGTAAGCCGGATAAG GCGCTC-GCGCCGCATCCGGCAA-CG ATGC CGACTGCCTGATGCGACGCTGACCGC GTCTTATCAGGCTTC TERM 4551 3847256 - 3847309 + F 78 -12.4 -2.53747 | gap 2, opp_overlap 3847256 3847255, overlap 3847255 3847289 3847298 GGTAAGCCGGATAAG GCGCTC-GCGCCGCATCCGGCA-ACG ATGC CGACTGCCTGATGCGACGCTGACCGC GTCTTATCAGGCTTC TERM 4552 3847289 - 3847321 + F 86 -14.2 -3.15708 | opp_overlap 3847256 3847255, overlap 3847256 3847255 3847298 GCAACGATGCCGACT GCCTGATGCGACGC TGACC GCGTCTTATCAGGC TTCCCTCTCATCTGT TERM 4553 3848373 - 3848353 - g 74 -8.9 -3.96327 | ACCCGCGAGCAGAAA CAGCGCGCG TTA CAGGCGCTG ACCCGCGTTGGCATG phnC 3847963 - 3848751 + | phosphonate/organophosphate ester transporter subunit TERM 4554 3849418 - 3849404 - g 78 -7.8 -4.39571 | overlap 3849405 TCGACAAACTGAAAA CCTCCG CGC CGGAGA AGCTGAAAGAACTGA TERM 4555 3849610 - 3849559 - g 79 -3.7 -5.06816 | gap 3, overlap 3849561 ACGCCGGAAGAAAAA GC-GGT-GCTGGAACGCCTGGGCTGG GCG CCATTCCGCGC-TTCCAGCGACCTGC AACTGGTTCCGATTC phnD 3848776 - 3849792 + | periplasmic binding protein component of Pn transporter phnE 3849847 - 3850677 + | membrane channel protein component of Pn transporter TERM 4556 3851182 - 3851203 + G 70 -5.1 -4.42386 | gap 1 CGACGCTGCAACGCT TCG-ACAGCG GCT CGCTGCACGA TTTTCTGCGTGAGCA phnF 3850698 - 3851423 + | putative transcriptional regulator TERM 4557 3851989 - 3851975 - g 73 -11.4 -2.77043 | overlap 3851974 TGCATCAGCTCAAAC GCGGCT GGC AGCCGC TGAATATCGCCACCA phnH 3851860 - 3852444 + | carbon-phosphorus lyase complex subunit TERM 4558 3852863 - 3852851 - g 78 -10.5 -3.53224 | CACCCTGCTGGCAAA CGGCG AAG CGCCG ACGCTGACCACCGCC TERM 4559 3852902 - 3852891 - g 70 -3.6 -4.70659 | overlap 3852893 GCCGACAGCGAAAAA CAGC CGTC GCCG CACGTTTTCAGCCTG phnI 3852444 - 3853508 + | phosphonate metabolism TERM 4560 3854101 - 3854087 - g 81 -6.4 -4.78149 | overlap 3854079 TCGATAACCCAAAAA TGGACA TGA TGCCCA CCCTGCAACTGTTCG phnJ 3853501 - 3854346 + | phosphonate metabolism phnK 3854343 - 3855101 + | phosphonates transport ATP-binding protein phnL 3855212 - 3855892 + | ATP-binding component of phosphonate transport TERM 4561 3856273 - 3856258 - g 74 -8.2 -3.97602 | overlap 3856250 3856248 3856259 GAAGAGACGCAGAAA CGCGGC GTCA ACCGCG CCGAGCACCGCCTGC TERM 4562 3856503 - 3856488 - g 70 -10.4 -3.26531 | overlap 3856468 3856486 GTACGAAGAGGAACA GCTGGC GCTT GCCAGC CACGCCCACGTTACT phnM 3855889 - 3856941 + | phosphonate metabolism TERM 4563 3857019 - 3856994 - g 72 -11.7 -2.54325 | overlap 3856993 3856991 CTCCGGGAAAGATAG CCTGCTGGCGG AACT CCGCCTGCGGG AACAAACTCAGTTAC phnN 3856941 - 3857498 + | ribose 1,5-bisphosphokinase phnO 3857485 - 3857919 + | aminoalkylphosphonic acid N-acetyltransferase TERM 4564 3858285 - 3858295 + G 70 -6.8 -4.11033 | overlap 3858281 TTGATTTCAGCCACA CGGT GGA ACCG TTTGTGGTGTTTGAT phnP 3857921 - 3858679 + | carbon-phosphorus lyase complex accessory protein SDY_4125 3859085 - 3858756 - | Z5694-like protein SDY_4126 3859909 - 3859154 - | hypothetical protein TERM 4565 3859747 - 3859714 - G 72 -7.5 -3.89055 | gap 1 ACAGACGTCCAGAAA GCTCGATCTCTTCTAC CAC GC-GAAAAGAACGAGC AACCGTCATAGGGCT SDY_4127 3862163 - 3859899 - | putative histidine kinase TERM 4566 3860791 - 3860818 + g 73 -11.3 -2.7094 | opp_overlap 3860790 3860793, overlap 3860790 3860793 GCTTGCGGATGTAAG GACTGCTTGCG GGAAAA CGCCAGCAGTC GTTGTGTCAGTAGCG TERM 4567 3863041 - 3863024 - g 72 -6.9 -4.1552 | GATCTGTTCAATAAA GAGCGCG ATAT CCCGCTC GGTAAAGCCCGCCTG SDY_4128 3862277 - 3863764 + | putative ATP-binding protein of ribose ABC transport system SDY_4129 3864040 - 3864750 + | putative permease of ribose ABC transport system TERM 4568 3864973 - 3864959 - g 73 -11.4 -2.66593 | opp_overlap 3864947, overlap 3864948 3864955 ATAACGTCAAAGTGA CGCTGG TTT CCAGCG GCTACGATCTGGGTC SDY_4130 3864769 - 3865710 + | putative periplasmic ribose-binding protein of ABC transport system SDY_4131 3865765 - 3866448 + | hypothetical protein SDY_4132 3866463 - 3867323 + | hypothetical protein SDY_4133 3867320 - 3868321 + | putative kinase SDY_4134 3869043 - 3868318 - | putative transcriptional regulator SDY_4135 3869462 - 3869067 - | iso-IS1 ORF2 SDY_4136 3870608 - 3869814 - | hypothetical protein SDY_4137 3872221 - 3870707 - | hypothetical protein TERM 4569 3870985 - 3871008 + g 74 -7.4 -4.1413 | TGGCAACTGTGTTAT TCGCGGTGAT CTGC ATCGCAGCGA TTTTGGCGGTATCTT TERM 4570 3872026 - 3872041 + g 75 -5.4 -4.62783 | gap 1 GTCGTGCTGCAACTT CAGC-CG GAT CGAGCTG TTTTTGCAGTGAATG SDY_4138 3872890 - 3872408 - | hypothetical protein insA 3872967 - 3873242 + | IS1 ORF1 insB 3873287 - 3873664 + | IS1 ORF2 yicM 3875064 - 3873880 - | putative transport protein TERM 4571 3874643 - 3874608 - G 72 -6.8 -4.20368 | gap 1, overlap 3874593 3874620 3874623 CCAGCGCAATAGAAA CCGCGCCGAAGATCACC GAC AGCG-CCTTCGGCACCG TACGCGGCGGTACCA TERM 4572 3874866 - 3874850 - G 75 -5.1 -4.67607 | overlap 3874851 TGGGTAATAAACAAA CTGGCAA ACA TTGCCAC AAAGGCGGTCACGGT TERM 4573 3875031 - 3875041 + g 77 -8.2 -4.09864 | GTCGGGTGATGGCAT CCGC GCC GCGG TTTTCGGCAATAAAT SDY_4142 3875292 - 3875651 + | hypothetical protein SDY_4143 3875635 - 3875958 + | putative DNA-binding protein yicN 3876552 - 3876073 - | hypothetical protein TERM 4574 3877369 - 3877391 + H 82 -5.6 -5.16237 | opp_overlap 3877344 TCACCAGAGTGTCTT TATTGGCG ACAATAA CGCCAGTA TTTTTTAATCCCATT TERM 4575 3878079 - 3878057 - H 72 -2.8 -5.09245 | TCAAAATGAGAAAAA TATGAATAAT TCT ATTAACCATA AATTTCATCACATTA yicP 3878058 - 3879812 + | cryptic adenine deaminase TERM 4576 3879837 - 3879819 - T 100 -13.1 -5.64006 | ACGGAATGAAAAAAA GCCCGGC GTCAT GCCGGGC AAAAGTCACCAGTTA uhpT 3881247 - 3879856 - | sugar phosphate antiporter TERM 4577 3881208 - 3881230 + g 71 -9.1 -3.53012 | CTTCGAGCGGAAGGT CCAGGGTCG GCTTG CGAACCTGG TTTAAGAAAGCCAGC uhpC 3882707 - 3881385 - | regulatory protein UhpC TERM 4578 3881667 - 3881655 - G 76 -9.1 -3.73872 | ACCAATAGTGAAGAA GCAGG TTG CCTGC ATCACGTAGCTGGCA uhpB 3884219 - 3882714 - | sensory histidine kinase UhpB uhpA 3884806 - 3884216 - | DNA-binding transcriptional activator UhpA TERM 4579 3884855 - 3884831 - H 91 -7.8 -5.26316 | opp_overlap 3884830 3884831 CTAGCGGATAAAAAA CGCGCATACC TTAAC GATAAGCGCG ATGTTGTTCAAGTTG TERM 4580 3884937 - 3884918 - H 95 -12.2 -4.11216 | opp_overlap 3884918 CGCTGATCGTCAAAA CGCTTACC TGAA GGTAAGCG TTTGGTGCGTGTTAT TERM 4581 3884918 - 3884937 + H 93 -12.2 -3.79882 | opp_overlap 3884918 CGCTGATCGTCAAAA CGCTTACC TGAA GGTAAGCG TTTGGTGCGTGTTAT SDY_4151 3885501 - 3885896 + | iso-IS1 ORF2 TERM 4582 3886290 - 3886267 - T 73 -11.2 -2.58767 | opp_overlap 3886273, overlap 3886263 3886273 GTAACCACCAATCCA GTTAAACAGA GTGT TCTGTTTAAC CAAAAACAGCAAGAT SDY_4152 3887138 - 3886743 - | iso-IS1 ORF2 SDY_4153 3888143 - 3887490 - | hypothetical protein TERM 4583 3888166 - 3888177 + r 73 -2.2 -5.18371 | GCCGGACATAATATT TGCT ATTA AGCG TTTTATTTTCTGCAA TERM 4584 3888500 - 3888526 + r 93 -13.8 -3.60502 | opp_overlap 3888500 TTCAGGGCTAATAAA TTGTGCCTGAGA TGG TCTCTGGCACAA TTTCACCCTATATAT TERM 4585 3888526 - 3888500 - R 100 -13.8 -4.16842 | opp_overlap 3888500 TTCAGGGCTAATAAA TTGTGCCTGAGA TGG TCTCTGGCACAA TTTCACCCTATATAT ilvN 3888893 - 3888603 - | acetolactate synthase 1 regulatory subunit ilvB 3890585 - 3888897 - | acetolactate synthase catalytic subunit TERM 4586 3890663 - 3890639 - R 100 -10.7 -4.98531 | gap 1, opp_overlap 3890616 3890639 TGCTTAAACGAAAAA CCCCGCCCGG TTTGCG CCG-GCGGGG TTTTGGAATCGTGTG TERM 4587 3890639 - 3890663 + r 89 -11.4 -4.16279 | gap 1, opp_overlap 3890639, overlap 3890616 TGCTTAAACGAAAAA CCCCGCCCGGT TTGC GCCG-GCGGGG TTTTGGAATCGTGTG ivbL 3890789 - 3890691 - | ilvB operon leader peptide TERM 4588 3890726 - 3890762 + g 70 -5.8 -4.27584 | gap 1, overlap 3890735 CGACCACCACACGCA CGACGACC-ACTGCGGC GGAT GGCGCAGTTGGTAGTAG TTTTGCGTTGAACAT TERM 4589 3890940 - 3890925 - H 100 -8.2 -5.4833 | opp_overlap 3890925, overlap 3890927 GCAGGTAACAAAAAA CCCCGC CGGA GCGAGG TTTCGTCAGCTGCCT TERM 4590 3891466 - 3891487 + H 100 -17.3 -4.79451 | opp_overlap 3891466 TCAAGTCGCACCAAA GGGGAGCGG GTAA CCGCTCCCC TTTTATATTTAGCGT TERM 4591 3891487 - 3891466 - H 100 -17.3 -3.74747 | opp_overlap 3891466 TCAAGTCGCACCAAA GGGGAGCGG GTAA CCGCTCCCC TTTTATATTTAGCGT TERM 4592 3891557 - 3891576 + H 74 -3.5 -4.93288 | overlap 3891558 GACCTACCATCCCTC CCGGCAA CATTTA TTGCCGC TTTTGTTTACATATT TERM 4593 3892471 - 3892490 + G 80 -5.6 -5.02074 | overlap 3892473 TCAGTATTTTGTTTA TTCTGCCG ATTC CGGCGGCA TTTTTTGGGGCATGG emrD 3891717 - 3892907 + | multidrug resistance protein D yidF 3893412 - 3892915 - | putative transcriptional regulator TERM 4594 3893344 - 3893330 - G 73 -4.2 -4.86033 | opp_overlap 3893334 3893336 AAATTGTGATAAAAA TCGGCA GGT TGCAGA GCATCCTTGTACTCT yidG 3893771 - 3893409 - | hypothetical protein yidH 3894108 - 3893761 - | hypothetical protein TERM 4595 3894484 - 3894499 + G 70 -6.1 -4.17556 | CGCACTGGCCATTGC TGCGC TACTTT GCGCA TTTATTAGCGGTATG yidI 3894218 - 3894667 + | hypothetical protein TERM 4596 3894715 - 3894725 + T 88 -5.4 -5.47159 | AGCGGGCATTATCGT CAGA ACT TCTG TTTTTTCTCTTCCAC yidJ 3896207 - 3894714 - | putative sulfatase insB 3897548 - 3897171 - | IS1 ORF2 insA 3897868 - 3897593 - | IS1 ORF1 TERM 4597 3897978 - 3897997 + H 70 -10 -3.07915 | opp_overlap 3897978, overlap 3897977 CCAATCGGCAAGGGA TCGGTCGG GCCA CCGACTGA GTTTAATTTCTCGGC TERM 4598 3898943 - 3898953 + H 71 -6.8 -4.11404 | TAACGAAAATGTGAT CTCC AGC GGAG TTTCTCTGATCTCGC SDY_4167 3899734 - 3900129 + | iso-IS1 ORF2 TERM 4599 3900523 - 3900491 - T 87 -11.3 -3.90922 | overlap 3900493 3900494 AGCCGTGCTAAAGAA TACGGACCAGCACCC AAC GGATGCCAGTCCACA CAATTAACGTAACTC TERM 4600 3900521 - 3900493 - T 86 -11.7 -3.54488 | overlap 3900491 3900494 CCGTGCTAAAGAATA CGGACCAGCACCC AAC GGATGCCAGTCCA CACAATTAACGTAAC TERM 4601 3900520 - 3900494 - T 81 -13 -2.72371 | overlap 3900493 3900491 CGTGCTAAAGAATAC GGACCAGCACCC AAC GGATGCCAGTCC ACACAATTAACGTAA SDY_4168 3901849 - 3900527 - | putative 6-phospho-beta-glucosidase TERM 4602 3902605 - 3902595 - H 77 -6.8 -4.43208 | ACATCGCTAAAGAAA TGCC CAC GGCA CCAAAGATTTTTTAG TERM 4603 3903672 - 3903690 + H 85 -6.1 -5.1848 | opp_overlap 3903672 3903670 ACACAGCATCGAACA CATCTTT AAAAA AAAGATG TTTTTTCAATTGATT TERM 4604 3904004 - 3903981 - g 76 -9.5 -3.72695 | ATGTGCTGCATCAAA CCGCCAGCC TGACTG GGCTGGTGG AGGTGTTAAAACGTC TERM 4605 3904466 - 3904432 - g 75 -11.5 -3.10071 | gap 1, opp_overlap 3904435 AAATGCCAGCGAATA CCAGGTGGAGT-ACCA TTTA CGGCGACTCCACCCGG AAAAGAGTTAACCGA yidP 3903761 - 3904477 + | putative transcriptional regulator yidE 3906135 - 3904474 - | hypothetical protein TERM 4606 3906315 - 3906295 - R 100 -14.7 -5.90231 | AGAAAGACAAAAAAA GCCCCACCA GAA TGGCGGGGC AAAGAGAATAGCTAG ibpB 3906759 - 3906331 - | heat shock chaperone IbpB TERM 4607 3906484 - 3906513 + g 88 -2.1 -5.57729 | opp_overlap 3906484 3906485, overlap 3906474 AAAGCTCAGGCTAAA TGGCTGATTCA TAAGCCCT TGATGCAGCCA TTTTTTCTCTTCTTT ibpA 3907284 - 3906871 - | heat shock protein IbpA yidQ 3907590 - 3907922 + | hypothetical protein yidR 3909168 - 3907924 - | hypothetical protein TERM 4608 3908366 - 3908327 - G 72 -8.4 -3.71649 | gap 1, opp_overlap 3908330 TGGGTAAAGGTTAAA CGTCGCTGCACGACGCCAC GCG GTGGCG-CGGGCAGGGTTG TTTCCGTTCCACTTA TERM 4609 3908330 - 3908363 + g 100 -13.1 -4.0098 | gap 1, opp_overlap 3908327 GTAAAGGTTAAACGT CGCTGCACGACGCCAC GCG GTGGCG-CGGGCAGGG TTGTTTCCGTTCCAC TERM 4610 3908610 - 3908620 + g 70 -4.6 -4.4715 | TACCGCTGTATTCAC GCGG ATG CTGC TTTTGTACGTTGACC TERM 4611 3909348 - 3909334 - g 81 -6.4 -4.82901 | overlap 3909337 3909338 CGCGCTGGATAAAAA GCACCA GTG TGGTAC TGAAGGTTTCAGCAA TERM 4612 3910108 - 3910122 + G 70 -10 -3.20348 | opp_overlap 3910096 3910092, overlap 3910093 3910092 CTATGCGCTGGATAG CGCAGA GAT TCTGCG TTCGGTGTTACTGAA TERM 4613 3910239 - 3910218 - g 95 -9.4 -4.87807 | opp_overlap 3910218 GCAAGATAGTAAAAA GCCGATGC CTGACC GCACCGGC TTTAAGAAAGTGGAT TERM 4614 3910283 - 3910249 - g 85 -10.1 -4.15222 | opp_overlap 3910257 ACCGGCTTTAAGAAA GTGGATTATGCGC AGTGGTATG GCGCATATTCCAC AGTTGAAAGATTAGC yidS 3909233 - 3910297 + | putative oxidoreductase SDY_4178 3911570 - 3911785 + | iso-IS1 ORF2 TERM 4615 3912021 - 3911971 - T 100 -16.4 -3.57418 | gap 1, opp_overlap 3911974, overlap 3911974 TATGCAGTAAACCAA TAATCAGTAAGCGGGCAAAC-GC GTTTAT GCTGTTTGCCCGCCCACAGATTA ATTCAGCACATACTT TERM 4616 3911974 - 3912018 + T 73 -10 -3.34013 | gap 1, opp_overlap 3911971 3911974 GCAGTAAACCAATAA TCAGTAAGCGGGCAAAC-GCG TTTA TGCTGTTTGCCCGCCCACAGA TTAATTCAGCACATA TERM 4617 3912018 - 3911974 - T 100 -13.7 -3.91541 | gap 1, opp_overlap 3911974, overlap 3911971 GCAGTAAACCAATAA TCAGTAAGCGGGCAAAC-GC GTTTAT GCTGTTTGCCCGCCCACAGA TTAATTCAGCACATA yidA 3912831 - 3912019 - | sugar phosphatase yidB 3913344 - 3912946 - | hypothetical protein TERM 4618 3913422 - 3913452 + r 100 -17 -3.47751 | opp_overlap 3913427, overlap 3913427 GCGGATTGCAGAAAT AAAAAGGGCGGAGA TGA TCTCCGCCCTTTTC TTATAGCTTCTTGCC TERM 4619 3913447 - 3913427 - R 100 -16.9 -5.38054 | opp_overlap 3913422 3913427 TTGCAGAAATAAAAA GGGCGGAGA TGA TCTCCGCCC TTTTCTTATAGCTTC TERM 4620 3913427 - 3913447 + r 100 -16.9 -4.80959 | opp_overlap 3913427, overlap 3913422 TTGCAGAAATAAAAA GGGCGGAGA TGA TCTCCGCCC TTTTCTTATAGCTTC gyrB 3915998 - 3913584 - | DNA gyrase subunit B TERM 4621 3914766 - 3914780 + g 74 -10 -3.53012 | CGCCGGATCGCGCTC CTGGCA GTC TGCCAG TTTGCCCGGCAGGCC TERM 4622 3915588 - 3915611 + g 77 -6.6 -4.56597 | ACGGTGAATTTTACC CTCGCGCTGG ATAA CCAGCTCCAG TTTTTGCGACAGGGC recF 3917100 - 3916027 - | recombination protein F TERM 4623 3916967 - 3916948 - G 73 -9.2 -3.63968 | overlap 3916941 CTGCAAACTGCGAAA CGCCCGAC CATG GCCGAGCG TATAGATGGCTTCCA dnaN 3918200 - 3917100 - | DNA polymerase III subunit beta dnaA 3919608 - 3918205 - | chromosomal replication initiation protein TERM 4624 3919133 - 3919173 + g 72 -8.3 -3.75153 | gap 1, overlap 3919137 3919141 GCACCGCCAGGGTTA TCT-GCCACCTGGCGAGC CGCCGC GCGCGCCAGTTGGTTAGA TTTACCTTCAACGAA TERM 4625 3919137 - 3919168 + g 80 -11.5 -3.30781 | overlap 3919133 3919141 CGCCAGGGTTATCTG CCACCTGGCGAGC CGCCGC GCGCGCCAGTTGG TTAGATTTACCTTCA TERM 4626 3919141 - 3919164 + g 71 -9.5 -3.43217 | overlap 3919137 3919133 AGGGTTATCTGCCAC CTGGCGAGC CGCCGC GCGCGCCAG TTGGTTAGATTTACC TERM 4627 3919279 - 3919298 + g 74 -10 -3.53224 | gap 1, opp_overlap 3919278 3919277 TGAGCGCGTAGAAGG CGCAGCACG TTG CG-GCTGCG TTTGCGCCACCAGTG rpmH 3920215 - 3920355 + | 50S ribosomal protein L34 TERM 4628 3920556 - 3920536 - gf 100 -2.6 -5.75945 | gap 1 AGTCGCCAAAAAAAA CGTTCGACG CGCC CAT-GAACG CAATCGGATTAAACG rnpA 3920372 - 3920731 + | ribonuclease P yidD 3920695 - 3920952 + | hypothetical protein yidC 3920955 - 3922601 + | putative inner membrane protein translocase component YidC TERM 4629 3922645 - 3922626 - f 79 -9.2 -4.17048 | opp_overlap 3922627, overlap 3922627 TTTTCGCTAAAATAA GGGCGGTC AGTT GACCGCCT TTTTTCTTTTCGTAG TERM 4630 3922627 - 3922644 + F 100 -12.7 -5.83211 | opp_overlap 3922626 3922627 TTTCGCTAAAATAAG GGCGGTC AGTT GACCGCC TTTTTTCTTTTCGTA TERM 4631 3922644 - 3922627 - f 80 -12.7 -3.09908 | opp_overlap 3922627, overlap 3922626 TTTCGCTAAAATAAG GGCGGTC AGTT GACCGCC TTTTTTCTTTTCGTA trmE 3922707 - 3924071 + | tRNA modification GTPase TrmE TERM 4632 3924091 - 3924132 + T 100 -10.2 -5.61596 | opp_overlap 3924092 3924093, overlap 3924094 TCTTAATTGATATAA AGGGCACTGTTCCGTTCT ACTATC AGAACGGAACAGCGCTTG TTTTTTTATGAGCAT TERM 4633 3924131 - 3924092 - T 95 -12.2 -4.09108 | opp_overlap 3924091 3924094, overlap 3924093 CTTAATTGATATAAA GGGCACTGTTCCGTTCTA CTAT CAGAACGGAACAGCGCTT GTTTTTTTATGAGCA TERM 4634 3924130 - 3924093 - T 93 -15.7 -3.04983 | opp_overlap 3924091 3924094, overlap 3924092 TTAATTGATATAAAG GGCACTGTTCCGTTCTA CTAT CAGAACGGAACAGCGCT TGTTTTTTTATGAGC TERM 4635 3924094 - 3924129 + T 100 -16.3 -4.89054 | opp_overlap 3924093 3924092, overlap 3924091 TAATTGATATAAAGG GCACTGTTCCGTTCT ACTATC AGAACGGAACAGCGC TTGTTTTTTTATGAG SDY_4190 3924712 - 3924317 - | iso-IS1 ORF2 SDY_4191 3925478 - 3925047 - | hypothetical protein insB 3926059 - 3925682 - | IS1 ORF2 insA 3926379 - 3926104 - | IS1 ORF1 TERM 4636 3926413 - 3926396 - R 72 -4.9 -4.63527 | gap 1 GGAGCACCTCAAAAA CACCATCA TAC TGA-GGTG TACTGGCAATAGCGG SDY_4194 3927163 - 3926450 - | IS600 ORF2 SDY_4195 3927606 - 3927304 - | IS600 ORF1 insA 3927700 - 3927975 + | IS1 ORF1 insB 3928020 - 3928397 + | IS1 ORF2 yieH 3929246 - 3928581 - | 6-phosphogluconate phosphatase TERM 4637 3929260 - 3929272 + H 72 -6.3 -4.30576 | ATGTCTTTCCTTTAT CGTTA GTT TAACG TTTTCGTCATGCCAA TERM 4638 3929534 - 3929548 + G 83 -5.7 -5.06414 | TTACCACCTTCTTGA CGATG GTTTA CATCG TTTTTGTTAACCCGC yieG 3929413 - 3930750 + | putative membrane/transport protein TERM 4639 3930795 - 3930771 - T 100 -12.2 -4.57837 | gap 1, opp_overlap 3930771, overlap 3930757 3930754 ATAGCGCGTTAAAAA CCCGCCATGCA TGAT TGC-TGGCGGG TTTTTTATTTACATC TERM 4640 3930771 - 3930795 + T 100 -12.2 -5.65927 | gap 1, opp_overlap 3930757 3930754 3930771 ATAGCGCGTTAAAAA CCCGCCATGCA TGAT TGC-TGGCGGG TTTTTTATTTACATC TERM 4641 3930978 - 3930968 - T 74 -6.8 -4.2828 | TTGCATCGAGGAAAA CCAG AAT CTGG CGCAGGTGATACTGA yieE 3932153 - 3931392 - | hypothetical protein yidZ 3933257 - 3932298 - | DNA-binding transcriptional regulator YidZ yidY 3934407 - 3933232 - | multidrug efflux system protein MdtL TERM 4642 3934529 - 3934507 - R 83 -13.5 -3.12351 | opp_overlap 3934510, overlap 3934510 TTTCCTGAGAGGCAA GAAGCCAGC GAATG GCTGGCTTC TTGAAGGATTTAGCC TERM 4643 3934510 - 3934526 + r 72 -9.4 -3.64283 | opp_overlap 3934507 3934510 CCTGAGAGGCAAGAA GCCAGC GAATG GCTGGC TTCTTGAAGGATTTA TERM 4644 3934526 - 3934510 - R 76 -9.4 -3.70773 | opp_overlap 3934510, overlap 3934507 CCTGAGAGGCAAGAA GCCAGC GAATG GCTGGC TTCTTGAAGGATTTA tnaB 3935726 - 3934539 - | low affinity tryptophan permease TERM 4645 3935677 - 3935667 - GR 75 -4.6 -4.85599 | GGCACCCCAGAAAAA CCAG GCA CCGG CAAGATCAACAGTGG SDY_4205 3936606 - 3935701 - | insertion element IS2 transposase InsD SDY_4207 3936929 - 3936564 - | insertion sequence 2 OrfA protein SDY_4208 3937294 - 3937031 - | hypothetical protein SDY_4206 3936886 - 3937125 + | hypothetical protein SDY_4209 3937489 - 3937884 + | iso-IS1 ORF2 rhsA 3941500 - 3937859 - | rhsA protein in rhs element TERM 4646 3940704 - 3940686 - G 75 -6.7 -4.30844 | gap 1, opp_overlap 3940700, overlap 3940688 AGGGTATCAGGAAAA GC-GGACG GTTC CGTCCCGC CGGAAGAGGCCTGCT TERM 4647 3941758 - 3941771 + G 70 -5.3 -4.35348 | TAGCTACACCAGCCC GTTTG TACG CAAAC TTTCTATTCTGTTGT TERM 4648 3942186 - 3942200 + G 70 -10 -3.12999 | CCGATACGGTCAATC TGGCGA CTA TCGCCA TTGCCTGTGCCGTCG yibF 3941729 - 3942337 + | glutathione S-transferase selA 3942435 - 3943826 + | selenocysteine synthase TERM 4649 3944230 - 3944251 + G 76 -9.5 -3.85698 | opp_overlap 3944230 3944212 GGTGCTGCGGGAATA CGGTTTTGC TGAG GCAAAACTG TTTATCACCGCAGCA TERM 4650 3945636 - 3945646 + G 70 -6.8 -4.08557 | overlap 3945613 GAAATGATCATTTAT TGCG CGA CGCA TTATTATTTCCGGAA selB 3943823 - 3945667 + | selenocysteinyl-tRNA-specific translation factor SDY_4214 3946248 - 3946463 + | iso-IS1 ORF2 TERM 4651 3947166 - 3947147 - f 100 -11.4 -5.71983 | opp_overlap 3947146 3947145 TGAAGCATAAAAAAA GGTGCGCC AGGA GACGCACC AGTTGTTGCAAAATC insA 3947361 - 3947636 + | IS1 ORF1 insB 3947681 - 3948058 + | IS1 ORF2 TERM 4652 3948364 - 3948381 + T 100 -12.7 -5.99154 | TTGTGACTGTTATTC GGCGCTC CACG GAGCGCC TTTTTTTCTTTCGTC TERM 4653 3949194 - 3949212 + T 89 -9 -4.65747 | TTTTTGGGCAACTTT TAGTTTAC TGC GTAAACTA TTTTATTGCGCGTTC TERM 4654 3949594 - 3949580 - T 73 -7.8 -4.11484 | opp_overlap 3949592, overlap 3949581 CGGAAGTGTTCAAAA CGCTGG GGG CCAGCA CGGATATCGCGCTTT TERM 4655 3950148 - 3950179 + T 71 -3.6 -4.73388 | overlap 3950150 GCTGTAATCTTCCTG TCCAGCACGCCG CGCCAGTT CGGTGTGCTGTC TTTTTACTCCCGCTT TERM 4656 3950150 - 3950177 + T 84 -10.6 -3.98256 | overlap 3950148 TGTAATCTTCCTGTC CAGCACGCCG CGCCAGTT CGGTGTGCTG TCTTTTTACTCCCGC yjbA 3950593 - 3950183 - | phosphate-starvation-inducible protein PsiE TERM 4657 3950810 - 3950795 - R 74 -5.4 -4.62069 | CCGGTACTGCAAAAA TCACCC ATTC AGGTGA TTCCCAGCCACCAGC yjbG 3953921 - 3953184 - | hypothetical protein yjbF 3954586 - 3953918 - | hypothetical protein TERM 4658 3954601 - 3954580 - G 80 -11.7 -3.32343 | opp_overlap 3954583, overlap 3954583 TCCAGAGGGGCAGAA TAACCACAC CGGA GTGTGGTTA TGGTAAATCCCTTCA TERM 4659 3954598 - 3954583 - G 76 -9 -3.80174 | opp_overlap 3954583, overlap 3954580 AGAGGGGCAGAATAA CCACAC CGGA GTGTGG TTATGGTAAATCCCT TERM 4660 3954583 - 3954598 + g 71 -9 -3.42699 | opp_overlap 3954583 3954580 AGAGGGGCAGAATAA CCACAC CGGA GTGTGG TTATGGTAAATCCCT yjbE 3954912 - 3954670 - | hypothetical protein SDY_4223 3955691 - 3955296 - | iso-IS1 ORF2 SDY_4224 3955886 - 3956323 + | hypothetical protein TERM 4661 3956565 - 3956555 - g 79 -4.6 -5.00616 | overlap 3956556 3956557 GTCCTGCGGAAAAAA GGCC ACA GACC TGTGGATAGCGACAC TERM 4662 3957100 - 3957086 - g 73 -9.2 -3.65046 | TCGTTATCTGAAGAA GCCGCC GAT AGCGGC CTCCCGGCTGGCACA TERM 4663 3957196 - 3957184 - g 73 -9.1 -3.66095 | AAACGGCGACGGAAA CGCTG ACA CAGCG TGAGCTGGTCGCGAG SDY_4225 3956304 - 3957512 + | IS1294 orf TERM 4664 3957730 - 3957706 - T 100 -17.3 -4.40358 | opp_overlap 3957706 ATTTATCTGATAAAA CAATGCCGACT TAT AGTCGGCATTG TTTTTAAGGTTATTT TERM 4665 3957706 - 3957730 + T 100 -17.3 -4.7153 | opp_overlap 3957706 ATTTATCTGATAAAA CAATGCCGACT TAT AGTCGGCATTG TTTTTAAGGTTATTT TERM 4666 3957818 - 3957865 + T 73 -11.3 -2.57931 | gap 1, opp_overlap 3957815 3957825 3957826, overlap 3957817 TAGGCCTGATAAGAC GCGTAAAGCGTCGCATCAGGCA CCAGT TGCCGGATGCGGCG-TAAACGC CTTATCCGGCCTACA TERM 4667 3957859 - 3957825 - T 75 -9.9 -3.61774 | opp_overlap 3957818 3957817, overlap 3957815 3957826 GATAAGACGCGTAAA GCGTCGCATCAGGCA CCAGT TGCCGGATGCGGCGT AAACGCCTTATCCGG TERM 4668 3957858 - 3957826 - T 82 -13.4 -2.76583 | opp_overlap 3957818 3957817, overlap 3957815 3957825 ATAAGACGCGTAAAG CGTCGCATCAGGCA CCAGT TGCCGGATGCGGCG TAAACGCCTTATCCG pgi 3959555 - 3957906 - | glucose-6-phosphate isomerase TERM 4669 3959479 - 3959446 - G 100 -14.8 -4.93318 | gap 1, opp_overlap 3959442 3959440 GAGAACTTAGAAAAA CGATCGCCG-TCTTT AGCAA AAAGATCGGCGATCG TAACGTCTTTCATTT TERM 4670 3960664 - 3960650 - g 70 -4.2 -4.68908 | overlap 3960651 3960660 GGTAGCGAAAATAAA GGTCGT ACA ACGACG CTTGGCCGTGGAGGC TERM 4671 3961398 - 3961410 + G 84 -7.7 -4.72863 | ATGCCGAGCAGGTGG TGCAG AAG CTGCA TTTTAATTTGTTTGA lysC 3960080 - 3961429 + | aspartate kinase III SDY_4228 3962411 - 3961506 - | insertion element IS2 transposase InsD SDY_4229 3962734 - 3962369 - | insertion sequence 2 OrfA protein TERM 4672 3963058 - 3963030 - R 75 -6.1 -4.45151 | opp_overlap 3963029 AATAGCTAACGAAAA TGGCCTGAT GCGATATGTTT ATCAGGCCA CGTCTTAATGTAATG fumB 3965514 - 3963868 - | fumarase B TERM 4673 3964488 - 3964503 + g 72 -4.7 -4.66163 | GTGGAATGTACTGAC CTGGA TTGTGT TCCAG TTTTTCGATCCAGAT TERM 4674 3964849 - 3964868 + g 75 -7.2 -4.36914 | gap 1 GTACGGCGGGCAGGC TGCAGTACC GAG GGTAC-GCA TTTTCTCGACGAGGA TERM 4675 3964869 - 3964885 + g 73 -3.7 -4.81249 | overlap 3964870 TACCGAGGGTACGCA TTTTCTC GAC GAGGAAG TTTTTCAGTTTGCCG TERM 4676 3965584 - 3965553 - R 76 -8.7 -4.13767 | opp_overlap 3965577 TTTGTTATTCGAAAA TGGCGTGCCGC GTAGTCACGG GCGGCACGCAA AGTGCATTTATAAGA dcuB 3966779 - 3965592 - | anaerobic C4-dicarboxylate transporter TERM 4677 3966028 - 3966039 + g 74 -2.2 -5.0538 | GCGATCATACCGGAA CGGA AGAC TTCG TTTTTTGAGATAGAC insB 3967291 - 3966914 - | IS1 ORF2 insA 3967611 - 3967336 - | IS1 ORF1 SDY_4235 3968628 - 3968233 - | iso-IS1 ORF2 SDY_4236 3968823 - 3969077 + | hypothetical protein yjdG 3969773 - 3969054 - | DNA-binding transcriptional activator DcuR yjdH 3971401 - 3969770 - | sensory histidine kinase DcuS TERM 4678 3970219 - 3970206 - G 74 -2.3 -5.14563 | TTGCTGATTAAAAAA CCAGC GATA ACCGG AGATTTGATCTTACC TERM 4679 3971160 - 3971173 + g 88 -5.2 -5.24129 | overlap 3971136 GCGATGGCCTGGATG CCGC TCTCCT GCGG TTTTTTCTGCAAGCC yjdI 3971582 - 3971812 + | hypothetical protein yjdJ 3971824 - 3972096 + | hypothetical protein SDY_4241 3972841 - 3972446 - | iso-IS1 ORF2 insB 3973786 - 3974163 + | IS1 ORF2 SDY_4243 3974711 - 3974316 - | iso-IS1 ORF2 SDY_4244 3974906 - 3975130 + | hypothetical protein insA 3975164 - 3975439 + | IS1 ORF1 insB 3975484 - 3975861 + | IS1 ORF2 TERM 4680 3975974 - 3975984 + F 76 -8.2 -4.08767 | opp_overlap 3975963 CTGACGCCGAACATG GCGG GAC CCGC TTTTGACGCGCTGGA ytfR 3976254 - 3977756 + | putative ATP-binding component of a transport system ytfT 3977767 - 3978696 + | putative transport system permease protein TERM 4681 3979073 - 3979087 + G 72 -7.8 -3.92143 | overlap 3979027 GTGCTGGTGATGGGC TGTGCC TTC GGCGCA TTTATGGGGCTTTTG yjfF 3978803 - 3979774 + | inner membrane ABC transporter permease protein YjfF TERM 4682 3979799 - 3979778 - T 100 -15.9 -4.87665 | GCGCAGCGATAAAAA CGCCTCTCC GTGT GGAGAGGCG CAGGAGATTACGCGT fbp 3980805 - 3979807 - | fructose-1,6-bisphosphatase TERM 4683 3980003 - 3979989 - G 74 -8.6 -3.91897 | GGTTGCACTCATAAA GCAAAC GCA GTTTGC CGTCCGGGTGGCTGG TERM 4684 3980750 - 3980773 + g 81 -9.6 -4.09864 | GCAGTGAGCTCACCG GTAGCATGAG AAAA CTCGTGCTGC TTTTCGACAATAAAT yjfG 3980981 - 3982354 + | putative ligase TERM 4685 3982411 - 3982378 - T 83 -13.9 -2.69468 | opp_overlap 3982379, overlap 3982375 3982389 CAGCCTGAGATAGCA TTGCCGGATAAGGCA TTTA CGCCGCATCCGGCAA ACCATACTCACATCA yjgA 3982982 - 3982437 - | hypothetical protein TERM 4686 3982604 - 3982629 + g 85 -9.7 -4.26189 | opp_overlap 3982583 3982581 CGATGGCGTCATCAC CTTGAGCGATC AGGC GATCGCGCAGG TTTTCCAGTTTATGG pmbA 3983076 - 3984428 + | peptidase PmbA TERM 4687 3984455 - 3984434 - f 79 -2.1 -5.58454 | overlap 3984435 CGGACAGTAAAAAAA CTGGCGCGA CCTG CCGCGCTAT AAACTAAAAAATTAC TERM 4688 3984748 - 3984735 - g 75 -5.2 -4.58685 | AAAGTGGTCGAAAAA GCCG ATAACG CGGC GCAAGTCAAAGACGC cybC 3984696 - 3984998 + | cytochrome b562 relB 3985189 - 3985428 + | bifunctional antitoxin/transcriptional repressor RelB nrdG 3985893 - 3985429 - | anaerobic ribonucleotide reductase-activating protein TERM 4689 3985976 - 3985943 - R 73 -9.5 -3.38316 | opp_overlap 3985948 3985963, overlap 3985944 GTATCAGGCAATCAA CGCCTGATGCGACGC TGTC GCGTCTTATCAGGCC TACAGCCGTTGCCAA TERM 4690 3985975 - 3985944 - R 81 -13 -2.62668 | opp_overlap 3985948 3985963, overlap 3985943 TATCAGGCAATCAAC GCCTGATGCGACGC TGTC GCGTCTTATCAGGC CTACAGCCGTTGCCA TERM 4691 3985948 - 3985966 + r 79 -11 -3.30124 | opp_overlap 3985944 3985943, overlap 3985963 AGGCAATCAACGCCT GATGCGAC GCT GTCGCGTC TTATCAGGCCTACAG TERM 4692 3985963 - 3986010 + r 88 -12.2 -3.53811 | opp_overlap 3985944 3985943 3985993 3985997 3986008, overlap 3985948 GATGCGACGCTGTCG CGTCTTATCAGGCCTACA GCCGTTGCCAAA TGTAGGCCGGATAAGGCG TTTACGCCGCATCCG TERM 4693 3986028 - 3985997 - R 78 -12.2 -2.64155 | opp_overlap 3985963 3986014 3986015, overlap 3985993 3986008 CCGTTGCCAAATGTA GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA ATCAACGCGGGATGC TERM 4694 3986015 - 3986047 + r 72 -10.5 -2.76162 | opp_overlap 3985997 3985993 3986008 3986034 3986035, overlap 3986014 3986035 CGGATAAGGCGTTTA CGCCGCATCCGGC AATCAAC GCGGGATGCGACG CTTTCACATCACATC nrdD 3988221 - 3986083 - | anaerobic ribonucleoside triphosphate reductase TERM 4695 3987912 - 3987939 + g 77 -6.2 -4.67234 | gap 1, opp_overlap 3987911 3987914, overlap 3987914 TCTGCTCGACCAGAC CACGGATCTCCTG GTT CAGGCGA-CCGCG TTTTTCACGTTCAAT TERM 4696 3988602 - 3988577 - R 93 -9.8 -4.60797 | gap 1 TGCTGACAGACAAAA CCCCGG-AATG ACCGG CATTACCGGGG CTTAGCGAAGATTTA treC 3990270 - 3988615 - | trehalose-6-phosphate hydrolase TERM 4697 3989329 - 3989317 - G 72 -7.7 -3.87104 | opp_overlap 3989314 GTTACACCAGAACAA GGCAT TCC ATGCC ACGTTGTGCATTCCT treB 3991741 - 3990320 - | trehalose(maltose)-specific PTS system components IIBC TERM 4698 3991180 - 3991194 + g 91 -5.6 -5.41143 | opp_overlap 3991168 3991173 3991177 3991180, overlap 3991182 GCACGATACCAAGGA TCGGCG TGC CGCCCA TTTTTTTCACCGCTG TERM 4699 3991820 - 3991807 - R 91 -8.1 -4.92239 | GGAAAAATTTAAAAA CGGGA ACGT TCCCG GAACGCAGCGAAGAT treR 3992807 - 3991860 - | trehalose repressor TERM 4700 3992844 - 3992883 + H 76 -8.7 -4.11938 | gap 1, overlap 3992849 GTTTAATTATTTGAG CCTAACTTTACCCA-TGC ATTCA GCAATGGGTAAAGTCTGG TTTATCGTTGGTTTA TERM 4701 3992849 - 3992878 + H 73 -10.2 -3.08526 | gap 1, overlap 3992844 ATTATTTGAGCCTAA CTTTACCCA-TGC ATTCA GCAATGGGTAAAG TCTGGTTTATCGTTG TERM 4702 3993519 - 3993535 + G 70 -5.1 -4.41348 | ATTCTCGGCGCTATT TCTTACG CCA CGGAAGA TTTATTTGCCGCGGG mgtA 3993186 - 3995882 + | magnesium-transporting ATPase MgtA TERM 4703 3996075 - 3996056 - T 74 -10.7 -3.14468 | opp_overlap 3996056 TGTCATCAGACTTAA TCCGGGC ATGATA GCCCGGA TTTCCATCAAGATTA TERM 4704 3996056 - 3996075 + T 83 -10.7 -3.65827 | opp_overlap 3996056 TGTCATCAGACTTAA TCCGGGC ATGATA GCCCGGA TTTCCATCAAGATTA yjgF 3996513 - 3996088 - | hypothetical protein TERM 4705 3996503 - 3996528 + g 100 -10.5 -4.63218 | opp_overlap 3996503 TTACAGCGGTAAAAA GTCTGGCTC ATTATAGG GAGCCAGAC TTTTATTACCAACCG TERM 4706 3996528 - 3996503 - G 100 -10.5 -4.61231 | opp_overlap 3996503 TTACAGCGGTAAAAA GTCTGGCTC ATTATAGG GAGCCAGAC TTTTATTACCAACCG pyrI 3997008 - 3996547 - | aspartate carbamoyltransferase regulatory subunit pyrB 3997956 - 3997021 - | aspartate carbamoyltransferase catalytic subunit pyrL 3998094 - 3997960 - | pyrBI operon leader peptide TERM 4707 3998005 - 3997988 - G 100 -12.7 -5.75342 | CCTGGGCAAAAAAAA GCCCCTC GATT GAGGGGC TGGGAATGGGTGATC TERM 4708 3998262 - 3998276 + r 95 -2.8 -5.93252 | TCGGTATCAATAATT GCAG ACATTTC CTGC TTTTTTCTTTTTCAC yjgH 3998769 - 3998374 - | hypothetical protein TERM 4709 3998880 - 3998855 - R 80 -5.4 -4.93877 | opp_overlap 3998855 CGTGAGTAAACAAAA CCCAGACATC ATGGGA AATGGCTGGG CTTAATTGAGCGTAG yjgI 3999613 - 3998900 - | oxidoreductase SDY_4268 3999787 - 3999951 + | hypothetical protein yjgJ 4000023 - 4000277 + | hypothetical protein yjgK 4000413 - 4000874 + | hypothetical protein TERM 4710 4000881 - 4000912 + F 71 -7.4 -3.85698 | overlap 4000882 ATGGCGTGATGACTT TTCGCCGTAAAT AACTCCAG GTTTACGGCGAG TTTGTGAAAAGAGCG SDY_4271 4001335 - 4001730 + | iso-IS1 ORF2 insA 4001938 - 4002213 + | IS1 ORF1 insB 4002258 - 4002635 + | IS1 ORF2 SDY_4274 4002735 - 4003100 + | insertion sequence 2 OrfA protein SDY_4275 4003058 - 4003963 + | insertion element IS2 transposase InsD TERM 4711 4004008 - 4004040 + T 95 -12.1 -3.88787 | opp_overlap 4004006 TGCATAAATTAATGT GATGCCGGGATAT TTTTTGT ATTTCCCGGCATC TTTATAGAGATATCA argI 4005061 - 4004057 - | ornithine carbamoyltransferase subunit I yjgD 4005223 - 4005639 + | hypothetical protein TERM 4712 4005679 - 4005654 - T 87 -9.7 -4.31379 | opp_overlap 4005654 ATTAATTGATTAAAA TGCCCGATAGC ACAC ACTAGCGGGCA TTTTTTAGAGTTCGC TERM 4713 4005654 - 4005679 + T 100 -9 -5.09426 | opp_overlap 4005654 ATTAATTGATTAAAA TGCCCGATAG CACACA CTAGCGGGCA TTTTTTAGAGTTCGC SDY_4278 4005977 - 4005684 - | hypothetical protein TERM 4714 4006222 - 4006210 - R 74 -3.3 -5.05606 | CCCAATAAAAATAAA GGATG ATG CTTCC AATTAGTAGAACATG SDY_4279 4006620 - 4006225 - | iso-IS1 ORF2 SDY_4281 4008091 - 4008486 + | iso-IS1 ORF2 TERM 4715 4009132 - 4009159 + T 87 -9.8 -4.3014 | opp_overlap 4009136, overlap 4009136 TTCTGTAAGAGATAA AAAAGGCCGGAG CATG CTCCGGCCTTCG TTTTCATCACTGTGT TERM 4716 4009136 - 4009155 + T 100 -15 -3.72073 | opp_overlap 4009136, overlap 4009132 GTAAGAGATAAAAAA GGCCGGAG CATG CTCCGGCC TTCGTTTTCATCACT TERM 4717 4009155 - 4009136 - T 100 -15 -5.47431 | opp_overlap 4009136 4009132 GTAAGAGATAAAAAA GGCCGGAG CATG CTCCGGCC TTCGTTTTCATCACT valS 4012035 - 4009180 - | valyl-tRNA synthetase TERM 4718 4011804 - 4011820 + g 72 -4.3 -4.62783 | overlap 4011807 CGGCGTGGTCAGTAC CGACCTG CCA CAGGGTG TTTTTGCCCTGCATG holC 4012478 - 4012035 - | DNA polymerase III subunit chi TERM 4719 4012633 - 4012651 + r 79 -11 -3.30124 | opp_overlap 4012622 4012597 4012596 4012625 ATAACAGCCTTGCCT GATGCGAC GCT GTCGCGTC TTATCAGGCCTACGA pepA 4014247 - 4012736 - | leucyl aminopeptidase TERM 4720 4012808 - 4012787 - G 77 -11.5 -3.14881 | opp_overlap 4012786 4012785 GAACTGTGCCAGCAA CGCCACCGG GCGA CCGGTTGCG CCTTTCGCCTTACCA yjgP 4014514 - 4015614 + | hypothetical protein yjgQ 4015611 - 4016696 + | hypothetical protein TERM 4721 4016733 - 4016710 - T 90 -14 -3.40639 | opp_overlap 4016710 4016714, overlap 4016714 AACCTGATGAACGAA TAAAGGGAGC GAAA GCTCCCTTTA TTATTGTTAGCAAAG TERM 4722 4016710 - 4016733 + T 100 -14 -3.9461 | opp_overlap 4016710 4016714, overlap 4016714 AACCTGATGAACGAA TAAAGGGAGC GAAA GCTCCCTTTA TTATTGTTAGCAAAG TERM 4723 4016714 - 4016729 + T 93 -10.4 -4.57882 | opp_overlap 4016714 4016710, overlap 4016710 TGATGAACGAATAAA GGGAGC GAAA GCTCCC TTTATTATTGTTAGC TERM 4724 4016729 - 4016714 - T 90 -10.4 -4.34737 | opp_overlap 4016710 4016714, overlap 4016710 TGATGAACGAATAAA GGGAGC GAAA GCTCCC TTTATTATTGTTAGC yjgR 4018359 - 4016857 - | hypothetical protein yjgB 4019550 - 4018489 - | putative oxidoreductase TERM 4725 4019803 - 4019818 + r 100 -9 -5.64274 | opp_overlap 4019803 4019801 ATCGGAACATCAATA GACGTC AACG GACGTC TTTTTTTGTGCCTAA SDY_4291 4021011 - 4020193 - | IS911 ORF2 TERM 4726 4020580 - 4020591 + g 77 -5.8 -4.63218 | opp_overlap 4020576 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG TERM 4727 4020932 - 4020952 + g 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_4292 4021340 - 4021038 - | IS911 ORF1 TERM 4728 4021933 - 4021955 + r 85 -6.2 -5.21709 | overlap 4021934 ACCAGCTCCGTGAAT GTCCGCTCTG GCA CAGAGCGAAA TTTTTTGATCTCCCC TERM 4729 4021934 - 4021954 + r 79 -9.7 -3.72302 | overlap 4021933 CCAGCTCCGTGAATG TCCGCTCTG GCA CAGAGCGAA ATTTTTTGATCTCCC TERM 4730 4022237 - 4022219 - R 73 -7.4 -4.10657 | opp_overlap 4022230 TCAGAGTCCGGAAAA GTTCAGCC CCA GTCTGAAC AGGCTTGCTGGCGCC fecE 4023067 - 4022300 - | iron-dicitrate transporter ATP-binding subunit fecD 4024024 - 4023068 - | iron-dicitrate transporter subunit FecD fecC 4025016 - 4024021 - | iron-dicitrate transporter permease subunit TERM 4731 4024995 - 4024965 - G 93 -11.8 -4.26938 | overlap 4024962 GCCAGAAAATAATAA GTGCTGCAACGGGA AGC CCCCACAGCAGCAC CGGGTGTTTTATCGC TERM 4732 4025789 - 4025808 + r 83 -6.4 -5.07567 | overlap 4025791 GAACGAGAGTTCCAG CACCACAA TCCG TTGTGGCG TTTTTTCGAGTGTAA fecA 4028283 - 4025959 - | citrate-dependent iron transport, outer membrane receptor fecI 4029841 - 4029320 - | RNA polymerase sigma factor FecI TERM 4733 4029400 - 4029425 + g 75 -11.9 -2.87564 | opp_overlap 4029400, overlap 4029402 CGGAGCTGATGGAAA CAGCGAGTTTG TGCG CAATCTCGCTG TATGTCAGACCATCC TERM 4734 4029425 - 4029400 - G 85 -11.9 -3.65902 | opp_overlap 4029400 4029402 CGGAGCTGATGGAAA CAGCGAGTTTG TGCG CAATCTCGCTG TATGTCAGACCATCC SDY_4300 4030099 - 4029866 - | hypothetical protein SDY_4301 4030294 - 4030689 + | iso-IS1 ORF2 TERM 4735 4030703 - 4030721 + F 70 -2.4 -4.91459 | AATTGGAAGCATCAC CGACATTT TTA ACATGTTG TTTTTCTAAGTGTTA insA 4030907 - 4031182 + | IS1 ORF1 insB 4031395 - 4031604 + | IS1 ORF2 TERM 4736 4033582 - 4033568 - g 85 -11.4 -3.57144 | CTGTTCACCGGTAAA CAGGGC GAT GCCCTG ACATTCGCAACCATT TERM 4737 4033658 - 4033642 - g 70 -3.7 -4.6856 | GAAAGAGGGGAAAAA CGAAACT AAA ATTTTCG TTACGCCAGATTTCG TERM 4738 4034210 - 4034178 - g 70 -4.1 -4.66833 | gap 1 CGGCAAGCGGAAAAA CCGCGATGTACGGT TATCCT ATCG-ACAGCGCGG CCTACAGCAAAAACA TERM 4739 4034234 - 4034224 - g 71 -3.2 -4.8048 | GGCCTACAGCAAAAA CAGC GAC GCTA AAATCGGAGACATCG SDY_4304 4033358 - 4034731 + | hypothetical protein SDY_4305 4035197 - 4034970 - | ISSfl4 ORF3 TERM 4740 4035724 - 4035734 + r 71 -6.8 -4.14541 | overlap 4035722 4035727 CCCACTACTTATTTG GTGG ACA CCAC TTTGTCTAATTCGTC TERM 4741 4036063 - 4036043 - R 73 -10.5 -3.05384 | opp_overlap 4036042 4036043 CTGCTCCGGAGGCAA CCATTACAG CCT CTGTAACGG ATTATCAGCCCTGGC SDY_4306 4036480 - 4036046 - | hypothetical protein SDY_4307 4037869 - 4036964 - | insertion element IS2 transposase InsD SDY_4308 4038192 - 4037827 - | insertion sequence 2 OrfA protein yjbD 4038476 - 4038748 + | hypothetical protein yjbC 4039621 - 4038749 - | 23S rRNA pseudouridine synthase F TERM 4742 4038801 - 4038814 + g 70 -3.7 -4.61527 | CGCTTACCGTTGGAC GCCGG GCAA CCGCC TTTTTCCGCCGTTTT SDY_4311 4039969 - 4040916 + | putative transcriptional regulator of sorbose uptake and utilization genes SDY_4312 4041291 - 4041076 - | iso-IS1 ORF2 SDY_4313 4041470 - 4041288 - | iso-IS1 ORF2 TERM 4743 4042725 - 4042744 + G 74 -2.8 -4.91852 | GTGCTACGTATGATG GGCGTGAA ATAT TTGATGCC TTTCTTTTTCCTCGG SDY_4315 4042122 - 4042919 + | sorbose-permease PTS system IIC component SDY_4316 4042930 - 4043646 + | PTS system, mannose-specific IID component SDY_4317 4043805 - 4045034 + | putative L-sorbose 1-phosphate dehydrogenase TERM 4744 4045168 - 4045143 - T 79 -3.2 -5.39755 | opp_overlap 4045143, overlap 4045145 4045148 GAGAAGCATAAAAAA TATCAGCGCC TTAAGG GGCGCTCAAA TTGGTGGCAAAGTGC TERM 4745 4045505 - 4045519 + T 79 -9.2 -4.02534 | GAACAGTTGCAGGGT CGCCGC TCA GCGGTG TTTATCCCTTTCGCT TERM 4746 4046111 - 4046131 + T 79 -11.2 -3.45742 | opp_overlap 4046110, overlap 4046109 CGTTTTTAAGTGAAT TGCCGGAT GCATG ATCCGGCA TCTTGTTCATAGTGC yjbB 4047750 - 4046194 - | putative alpha helix protein TERM 4747 4046277 - 4046260 - G 70 -4.1 -4.68384 | AGCCACCGAACAAAA CAGCG AGTTCAGA CGCTG CATATCTCCCAGTAA TERM 4748 4046457 - 4046445 - G 71 -3.3 -4.84311 | overlap 4046440 CGCCAGAGAAGAAAA CCGAC ATT GCCAG TTTTAAATTACTGAG TERM 4749 4047667 - 4047694 + g 86 -4 -5.41143 | TACCAGTGCGGTAAC GCCGATCCCC GCGCAAAA GGCGAGCGGC TTTTTTTCGACGCTC TERM 4750 4047749 - 4047731 - G 77 -10.2 -3.70417 | overlap 4047720 4047732 AGGACAGTACGCAAA CGCGCGCC GAA GACGCGCA TTACGCCGGTTCAAA TERM 4751 4047748 - 4047732 - G 73 -11.5 -2.81768 | overlap 4047720 4047731 GGACAGTACGCAAAC GCGCGCC GAA GACGCGC ATTACGCCGGTTCAA TERM 4752 4048016 - 4047986 - R 90 -10.4 -4.29106 | opp_overlap 4047990, overlap 4047988 4047990 TTTCATATTAATAAA GAGACAGGGCACTC ATT GAGCGCCCTGTTTG TTGTAAGGAAAAGTG TERM 4753 4048014 - 4047988 - R 95 -13 -3.7456 | opp_overlap 4047990, overlap 4047986 4047990 TCATATTAATAAAGA GACAGGGCACTC ATT GAGCGCCCTGTT TGTTGTAAGGAAAAG TERM 4754 4047990 - 4048012 + r 95 -13.4 -4.30719 | opp_overlap 4047988 4047986 4047990 ATATTAATAAAGAGA CAGGGCACTC ATT GAGCGCCCTG TTTGTTGTAAGGAAA TERM 4755 4048012 - 4047990 - R 100 -15.6 -3.44527 | opp_overlap 4047990, overlap 4047988 4047986 ATATTAATAAAGAGA CAGGGCACTC ATT GAGCGCCCTG TTTGTTGTAAGGAAA insB 4048458 - 4048081 - | IS1 ORF2 insA 4048778 - 4048503 - | IS1 ORF1 metH 4052505 - 4048807 - | B12-dependent methionine synthase TERM 4756 4051352 - 4051368 + g 72 -6.5 -4.41237 | overlap 4051340 4051338 4051354 TGCTGACGCGCTACA TCCAGCG CCT CGCTGTA TTTCTCTTCTTTGAT TERM 4757 4051354 - 4051366 + g 76 -9.1 -3.79177 | overlap 4051340 4051338 4051352 CTGACGCGCTACATC CAGCG CCT CGCTG TATTTCTCTTCTTTG TERM 4758 4052681 - 4052667 - H 81 -3.6 -5.30348 | AGCTAACAATAAAAA TGAAAA TGA TTTCCA CAATACAGAAAAAGG iclR 4052705 - 4053529 + | transcriptional repressor IclR SDY_4325 4055683 - 4055288 - | iso-IS1 ORF2 SDY_4326 4055878 - 4056093 + | hypothetical protein aceK 4057798 - 4056062 - | bifunctional isocitrate dehydrogenase kinase/phosphatase protein TERM 4759 4056555 - 4056531 - G 78 -12.2 -2.91264 | TGCTCCAGCCAGATA TTGAGCGGCA CCATC CGCCGCTCAA TATAAAGATGGCGAA TERM 4760 4056582 - 4056597 + g 90 -6.8 -5.07053 | opp_overlap 4056565 CGAATCACAATTTGT TCGCCG AGAT CGGTGA TTTTTTCCGCTGCTT TERM 4761 4057148 - 4057136 - G 84 -7.7 -4.72986 | GATCGGCAGCAAAAA TGGCA ATG TGCCA GAAGGCGTGATCAGT TERM 4762 4057461 - 4057438 - G 88 -5.2 -5.20783 | overlap 4057439 AGCTAAAGATAAAAA GCCGCTCG GGAGTAAG CGAGCGGT GGTCAAATAACCGAC TERM 4763 4057517 - 4057496 - G 79 -3.6 -5.09895 | CACGGAGTTAAAAAA GCTCTCCG CAATCT CGAAGCGC GGGTAATCCGGCAAC aceA 4059286 - 4057982 - | isocitrate lyase TERM 4764 4058270 - 4058292 + g 70 -4.8 -4.4648 | overlap 4058274 GCCCATATCCGACAG CTGCTGCTGG AAG CTAGCAATAG TTTTGTCGTCGAGGT TERM 4765 4059082 - 4059097 + g 77 -3.2 -5.0538 | CAGTCAGTGCACCGA GGCTGT TGAT GTAGCC TTTTTTCGACTCGCC TERM 4766 4061099 - 4061084 - R 93 -6.8 -5.63517 | TTCGGAAATAAAAAA GGCACC CGAA GATGCC TGAGGTAAGGTGCTG metA 4062074 - 4061145 - | homoserine O-succinyltransferase insB 4062585 - 4062208 - | IS1 ORF2 insA 4062905 - 4062630 - | IS1 ORF1 yjaB 4063007 - 4063450 + | hypothetical protein yjaA 4063897 - 4063514 - | hypothetical protein TERM 4767 4064006 - 4064031 + H 100 -9.8 -5.61596 | opp_overlap 4064006 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 4768 4064031 - 4064006 - H 72 -9.1 -3.61398 | opp_overlap 4064006 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SDY_4335 4064021 - 4065367 + | IS4 orf TERM 4769 4065378 - 4065349 - f 89 -9.3 -4.59109 | opp_overlap 4065343 4065350 4065351 4065373, overlap 4065351 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACTCCTTCTGATGC TERM 4770 4065350 - 4065377 + F 85 -12.8 -3.31188 | opp_overlap 4065349 4065351, overlap 4065343 4065351 4065373 ACAGCCCCGAAAAAG AGCCAGTCAGTT GCTT AACTGACTGGCA TTACTCCTTCTGATG TERM 4771 4065351 - 4065376 + F 90 -16.3 -2.58231 | opp_overlap 4065349 4065351, overlap 4065350 4065343 4065373 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTCCTTCTGAT TERM 4772 4065376 - 4065351 - f 100 -16.3 -3.90762 | opp_overlap 4065351 4065350 4065343 4065373, overlap 4065349 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTCCTTCTGAT TERM 4773 4065373 - 4065395 + F 73 -4.2 -4.86731 | opp_overlap 4065351 4065349, overlap 4065351 4065350 4065343 AGTTGCTTAACTGAC TGGCATTA CTCCTTC TGATGCCA TTTTATTTCAGGAAG SDY_4337 4066193 - 4066540 + | iso-IS1 ORF2 insA 4066574 - 4066849 + | IS1 ORF1 insB 4066894 - 4067271 + | IS1 ORF2 yiaH 4068280 - 4067282 - | hypothetical protein TERM 4774 4068125 - 4068113 - G 71 -3.3 -4.84363 | GGAAATCATGAAAAA TAGCG GCA CGCTG ACACGAGAGGCAGAG SDY_4341 4068418 - 4068720 + | IS600 ORF1 SDY_4342 4068861 - 4069691 + | IS600 ORF2 TERM 4775 4069917 - 4069899 - g 77 -3 -5.14563 | overlap 4069901 CCGGCGAGCAAAAAA TCGACGTC ACC GCCTTCGA ACAGTTCCAGGGAAG SDY_4343 4069724 - 4070023 + | hypothetical protein TERM 4776 4070823 - 4070805 - g 70 -6.7 -4.12254 | gap 1 CAGTACGAGAAAGAA GCG-CAGC AGCT GCTGGCGC TGGAAAATCCGCTGC glyQ 4070118 - 4071029 + | glycyl-tRNA synthetase subunit alpha TERM 4777 4071598 - 4071608 + G 72 -8.2 -3.85698 | CCGATCGAGTGATTC GCGG CCA CCGC TTTATGGGCGAGCCG glyS 4071039 - 4073108 + | glycyl-tRNA synthetase subunit beta TERM 4778 4073127 - 4073144 + F 100 -12.7 -6.11644 | opp_overlap 4073127 TGCCGTTATTAAAAA GCCTGCC ATCT GGCAGGC TTTTTTTTTCGCTAA TERM 4779 4073144 - 4073127 - f 100 -12.7 -4.72272 | opp_overlap 4073127 TGCCGTTATTAAAAA GCCTGCC ATCT GGCAGGC TTTTTTTTTCGCTAA TERM 4780 4073203 - 4073225 + F 85 -3.5 -5.48303 | opp_overlap 4073203 GCTGAATAAAGATTA TCTCATATA TTAAT TTTATGAGA TTTTTTTAGGATTAT TERM 4781 4073364 - 4073335 - f 78 -6.5 -4.64844 | gap 1 GGCAGACAGAGAAAA GCCCCAC-CTGACT ATA AATCAAAGTGAGGC CCCTCTATGCATAGA yiaZ 4073431 - 4073583 + | small toxic polypeptide TERM 4782 4073592 - 4073611 + T 100 -13.6 -4.1673 | overlap 4073588 AGAGTAAGAGTCTTC GGCGGGAA GTTA TTCCCGCC TTTCTTACGGCGTTG TERM 4783 4073742 - 4073723 - T 100 -11.4 -6.11392 | opp_overlap 4073723 4073721 4073736 4073740 AAACAAATAAAAAAA TCCCCGCC AAAT GGCAGGGA TCTTAGATTCTGTGC cspA 4073983 - 4073771 - | major cold shock protein TERM 4784 4074237 - 4074218 - R 100 -13.6 -4.08692 | TAATCGGTTGGAAAA CGGTCCTG TCAT CAGGACCG TAAACAGCAATAAAG yiaG 4074554 - 4074264 - | putative transcriptional regulator yiaF 4074812 - 4075642 + | hypothetical protein TERM 4785 4075677 - 4075644 - T 90 -10.5 -4.2528 | gap 1, opp_overlap 4075652, overlap 4075652 CTGCAACCCAATAAA GAGTAAAAGCCCGA GCGATTA TCGGGCT-TTACTC CACGCAGTCGCGGCT TERM 4786 4075670 - 4075652 - T 82 -7.4 -4.55446 | opp_overlap 4075652, overlap 4075644 CAATAAAGAGTAAAA GCCCGA GCGATTA TCGGGC TTTACTCCACGCAGT yiaE 4076666 - 4075692 - | putative dehydrogenase TERM 4787 4076760 - 4076733 - H 100 -14.3 -3.82481 | AGGAAAACTGAAGAA TGCCAGGTGAT TTCTGC ATCACCTGGCA TGAAAGGGATTACAG TERM 4788 4077848 - 4077819 - g 72 -4.3 -4.61231 | gap 1, opp_overlap 4077841 4077847, overlap 4077820 TGACAGCGGGAAAAA GCTGATCTGCATTG ATC CAATGC-GATCGGA AACCGTCGATTTCTT TERM 4789 4078056 - 4078044 - g 81 -6.2 -4.74706 | overlap 4078045 CGGAATAGCGAAAAA CGCC GAATG GGCG GCAGAGATTTGTGGT TERM 4790 4078137 - 4078119 - g 70 -6 -4.2558 | overlap 4078121 TATTTTCCACCAAAA TACCACCA TGC TGATGGCA GGCTGGGGAATGCAG TERM 4791 4078889 - 4078916 + G 76 -4.1 -5.02074 | gap 1, opp_overlap 4078872 4078884, overlap 4078890 TGCCGGAAAACCCGG ACAGCG-AGCGG TTTAT TCGCTTCGCTGA TTTTTTCCGCGATCC TERM 4792 4079408 - 4079386 - g 73 -11.3 -2.66695 | overlap 4079385 4079383 GTGCTGACCAAAGAT CTCCCCAGC TCGCG GCTGGGGAA TGGCTGTGCGGGTAA bisC 4077283 - 4079502 + | biotin sulfoxide reductase TERM 4793 4079658 - 4079616 - T 72 -10.5 -2.82635 | ACCTCCAGCATCAGA TGGGGATGGCGCTGTTGCA CATAC TGCATCAGCGCCTTACCAA TACCGCGCCTGACGG tag 4080471 - 4079908 - | 3-methyl-adenine DNA glycosylase I TERM 4794 4080300 - 4080315 + g 83 -6.1 -5.00884 | ACTGATGAAAGCAGG CGCGA TAGTTT TCGCG TTTTTTGAGGACGGT TERM 4795 4081037 - 4081067 + H 80 -12.6 -3.06133 | overlap 4081039 ACCGATCCGTTATGG CATGCCAGCGTGAG TAC CTTAGGCTGGCGTG TTGACTCCCGGCTTG TERM 4796 4081462 - 4081476 + H 78 -6.4 -4.56775 | overlap 4081463 TTCATTCCGTTCTGA TGGCAT TTC ATGCCG TTTTTCCCCAGGCAT yhjX 4081715 - 4082758 + | putative resistance protein SDY_4356 4083130 - 4083525 + | iso-IS1 ORF2 yjfN 4083909 - 4083607 - | hypothetical protein TERM 4797 4083851 - 4083893 + g 76 -3.5 -4.98531 | gap 1 GGACAAGTCACTAAT TGCAGC-GAGGGTGAGGCAA GTAA TTGTTTCATCGTCAGCTCCA TTTTTCGTTTCCCCA yjfO 4084360 - 4084031 - | hypothetical protein yjfP 4084542 - 4085291 + | esterase yjfQ 4086043 - 4085288 - | transcriptional repressor UlaR TERM 4798 4085875 - 4085890 + g 87 -4.6 -5.22039 | overlap 4085876 GTTGGGTAATAGCTT CTGCGC CATT GCGCAC TTTTTTCAGTTTGCC TERM 4799 4086142 - 4086101 - R 90 -13.1 -3.47762 | overlap 4086099 4086102 AATAGCCAGGAAATA CTACTCCGGATAGCGCGAA CTTC TCCACGCTATCCGGTATAA ACGACAGATTACAGG TERM 4800 4086141 - 4086102 - R 86 -14.4 -2.67934 | overlap 4086101 4086099 ATAGCCAGGAAATAC TACTCCGGATAGCGCGAA CTTC TCCACGCTATCCGGTATA AACGACAGATTACAG yjfR 4087146 - 4086151 - | putative L-ascorbate 6-phosphate lactonase ulaA 4087560 - 4088957 + | ascorbate-specific PTS system enzyme IIC sgaB 4088973 - 4089278 + | L-ascorbate-specific enzyme IIB component of PTS ptxA 4089288 - 4089752 + | L-ascorbate-specific enzyme IIA component of PTS ulaD 4089766 - 4090416 + | 3-keto-L-gulonate-6-phosphate decarboxylase TERM 4801 4090485 - 4090465 - f 100 -12.5 -4.7497 | GGCATCTATGAAAAA GCGCTCCCC GCC GGGGAGTGC TGGCTGGAACGGCTG sgaE 4091280 - 4091966 + | L-ribulose-5-phosphate 4-epimerase TERM 4802 4092054 - 4092037 - f 100 -12.7 -5.40072 | CGTTTTTCAAAAAAA GCCCCCT GCGA AGGGGGC AAAGCAAACTATGGC TERM 4803 4092173 - 4092185 + F 70 -9.1 -3.46435 | overlap 4092171 4092170 TACGTGGTAGTACGT TGCGC CTT GCGCA TCTGTTTCTTCATTT rpsF 4092697 - 4093092 + | 30S ribosomal protein S6 priB 4093099 - 4093413 + | primosomal replication protein N rpsR 4093418 - 4093645 + | 30S ribosomal protein S18 rplI 4093687 - 4094136 + | 50S ribosomal protein L9 TERM 4804 4094150 - 4094192 + T 88 -8.4 -4.74132 | opp_overlap 4094138 4094162, overlap 4094157 4094162 AATTCGTTATTCAAC GAGACGTAAAAACGCCGACC ATT GGTCGGCGTTTTGCTTTCTA TTTTTCGTCAGGTAT TERM 4805 4094157 - 4094185 + T 100 -16.1 -3.33352 | opp_overlap 4094162, overlap 4094150 4094162 TATTCAACGAGACGT AAAAACGCCGACC ATT GGTCGGCGTTTTG CTTTCTATTTTTCGT TERM 4806 4094180 - 4094162 - T 100 -16 -4.72333 | opp_overlap 4094157 4094150 4094162 AACGAGACGTAAAAA CGCCGACC ATT GGTCGGCG TTTTGCTTTCTATTT TERM 4807 4094162 - 4094180 + T 100 -16 -4.68919 | opp_overlap 4094162, overlap 4094157 4094150 AACGAGACGTAAAAA CGCCGACC ATT GGTCGGCG TTTTGCTTTCTATTT SDY_4373 4095398 - 4095003 - | iso-IS1 ORF2 insA 4095834 - 4096109 + | IS1 ORF1 insB 4096154 - 4096531 + | IS1 ORF2 ytfB 4097315 - 4096641 - | hypothetical protein TERM 4808 4096720 - 4096750 + g 74 -7.4 -4.13014 | opp_overlap 4096712, overlap 4096721 4096730 4096743 GTATCAATGGTTAAG CCCGTCACCACGCC GCT GGCGTTCTGGCGGA TTTTCACCATCTGCC TERM 4809 4096721 - 4096749 + g 72 -10.9 -3.07487 | opp_overlap 4096712, overlap 4096720 4096730 4096743 TATCAATGGTTAAGC CCGTCACCACGCC GCT GGCGTTCTGGCGG ATTTTCACCATCTGC fklB 4097497 - 4098117 + | peptidyl-prolyl cis-trans isomerase cycA 4098426 - 4099838 + | D-alanine/D-serine/glycine permease TERM 4810 4099851 - 4099875 + T 100 -16.5 -4.19817 | opp_overlap 4099839 TAACCGCATTATCAT GCTGGATGGCG CAA TGCCATCCAGC TTTTAGATCACTCAC ytfE 4100545 - 4099883 - | cell morphogenesis/cell wall metabolism regulator ytfF 4101622 - 4100648 - | putative transmembrane subunit TERM 4811 4101327 - 4101301 - G 74 -10.2 -3.43328 | overlap 4101295 TAGCAAAGACAGGAA TGACCACCGGCA GGG TGCCGATAATCA TCGTGGAAACAGGCG ytfG 4102581 - 4101721 - | putative oxidoreductase TERM 4812 4101866 - 4101884 + gH 72 -6.6 -4.18018 | overlap 4101867 AGCATATCCGCCAGT CCGTCGGG CAG TCCGACGC TTTTCAGTGCCGCGG TERM 4813 4101867 - 4101883 + gH 70 -10.1 -3.10597 | overlap 4101866 GCATATCCGCCAGTC CGTCGGG CAG TCCGACG CTTTTCAGTGCCGCG ytfH 4102580 - 4103050 + | hypothetical protein TERM 4814 4103108 - 4103136 + Tr 73 -9.6 -3.35467 | opp_overlap 4103096, overlap 4103102 TAAGATGCGCCAGCA TCGTATCCGCCA ATAAA TGCCGGATGCGA TTGATGATTTATAGG cpdB 4105116 - 4103167 - | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 4815 4103821 - 4103832 + g 70 -3.6 -4.59773 | GGCGGCATTACGGAA GGTC AACA GGCC TTTTTCCACCTCCAC TERM 4816 4104484 - 4104429 - G 75 -11.8 -2.88663 | opp_overlap 4104471 ACGGATCGGCAGACA GCCCGGAATGCGCCAGAACGACAACG ACAT CGGCACCTTTCTCGCGCATTTCAGGC ACGTATTTGCGCACG SDY_4384 4105512 - 4105117 - | iso-IS1 ORF2 cysQ 4106074 - 4106814 + | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase TERM 4817 4106817 - 4106859 + T 80 -10.1 -3.86346 | gap 1, opp_overlap 4106817 4106816 4106820 GTCTATTTACTAAAT TCA-GATGGCAGAAACAG TGTATTTC CTGATTCTGCCATCCTGA TTTCTCCCAACCTAA TERM 4818 4106855 - 4106820 - T 76 -12 -2.68279 | opp_overlap 4106817, overlap 4106817 4106816 TATTTACTAAATTCA GATGGCAGAAACAG TGTATTTC CTGATTCTGCCATC CTGATTTCTCCCAAC insB 4107378 - 4107001 - | IS1 ORF2 insA 4107698 - 4107423 - | IS1 ORF1 TERM 4819 4107725 - 4107783 + r 72 -5.2 -4.66163 | opp_overlap 4107732 4107739 4107740, overlap 4107740 AAAAACACCATCATA CACTAAATCAGTAAGTTGGCAGCATCAC CCG GTGATGCTGCCAATTAGTAGAACATGTG TTTTTCAATAAACGT TERM 4820 4107776 - 4107732 - R 95 -11.8 -3.89956 | opp_overlap 4107725 4107740, overlap 4107739 4107740 CCATCATACACTAAA TC-AGTAAGTTGGCAGCATCAC CCG GTGATGCTGCCAA-TTAGTAGA ACATGTGTTTTTCAA TERM 4821 4107769 - 4107739 - R 100 -17 -3.34629 | opp_overlap 4107725 4107740, overlap 4107732 4107740 ACACTAAATCAGTAA GTTGGCAGCATCAC CCG GTGATGCTGCCAAT TAGTAGAACATGTGT TERM 4822 4107768 - 4107740 - R 100 -20.5 -2.60054 | opp_overlap 4107725 4107740, overlap 4107739 4107732 CACTAAATCAGTAAG TTGGCAGCATCAC CCG GTGATGCTGCCAA TTAGTAGAACATGTG TERM 4823 4107740 - 4107768 + r 100 -20.5 -3.15249 | opp_overlap 4107740 4107739 4107732, overlap 4107725 CACTAAATCAGTAAG TTGGCAGCATCAC CCG GTGATGCTGCCAA TTAGTAGAACATGTG SDY_4388 4108164 - 4107769 - | iso-IS1 ORF2 TERM 4824 4108579 - 4108600 + r 76 -7.9 -4.30978 | ATCAGTTACTGCTGG CGTAGCTGG AGAT CCAGCGGCG TTTTGCTGGGTTCGC yjeK 4109597 - 4108569 - | hypothetical protein efp 4109639 - 4110205 + | elongation factor P TERM 4825 4110210 - 4110241 + F 90 -13 -3.65046 | overlap 4110214 GCGTGAAGTAATGCG GTTGTGGTGCGGCC TGCA GGCTGCACCATCAC TTATTCAGGTCAGAG TERM 4826 4110214 - 4110237 + F 86 -14.6 -2.66106 | overlap 4110210 GAAGTAATGCGGTTG TGGTGCGGCC TGCA GGCTGCACCA TCACTTATTCAGGTC SDY_4391 4110257 - 4110382 + | entericidin A TERM 4827 4110670 - 4110647 - f 87 -11 -3.90559 | opp_overlap 4110647 AGCAATAAGCAATAA CGGTACGACA GCTG TGTCGTGCCG TTTGTTTTCTCTGCG TERM 4828 4110647 - 4110670 + F 100 -13.2 -4.83243 | opp_overlap 4110647 AGCAATAAGCAATAA CGGTACGACA GCTG TGTCGTGCCG TTTGTTTTCTCTGCG sugE 4110665 - 4111132 + | SugE blc 4111662 - 4111129 - | outer membrane lipoprotein Blc TERM 4829 4111740 - 4111723 - R 95 -11.3 -4.46581 | overlap 4111714 GAAAAGCGGAGAAAA GGTCCGA AAAT TCGGACC CGATGAAATTTTACT ampC 4112884 - 4111751 - | beta-lactamase TERM 4830 4112905 - 4112929 + r 93 -12.7 -3.79043 | opp_overlap 4112907, overlap 4112906 CTGGTTTCCATACAA AACGGCCCGCC ATA GGCGGGCCGGA TTTACATTGGTGATG TERM 4831 4112906 - 4112928 + r 93 -16.2 -2.86944 | opp_overlap 4112907, overlap 4112905 TGGTTTCCATACAAA ACGGCCCGCC ATA GGCGGGCCGG ATTTACATTGGTGAT TERM 4832 4112927 - 4112907 - R 100 -19.7 -4.52589 | opp_overlap 4112906 4112905 GGTTTCCATACAAAA CGGCCCGCC ATA GGCGGGCCG GATTTACATTGGTGA frdD 4113306 - 4112947 - | fumarate reductase subunit D frdC 4113712 - 4113317 - | fumarate reductase subunit C frdB 4114457 - 4113723 - | fumarate reductase iron-sulfur subunit frdA 4116258 - 4114450 - | fumarate reductase flavoprotein subunit TERM 4833 4115261 - 4115286 + g 79 -2.6 -5.24129 | gap 1, overlap 4115263 GCTTTCGCCAGTTCG CAG-ATGAACG GCAGA CGTTCATGCAG TTTTTTCTCGCCGAG TERM 4834 4115342 - 4115322 - G 77 -8.9 -4.04206 | opp_overlap 4115323 4115325, overlap 4115325 4115327 GCAGGTCGAGATAAA CCACATCGC CAC GCGGCGTGG AGATGGTGTTGCCTT TERM 4835 4115347 - 4115325 - G 75 -12 -3.06418 | opp_overlap 4115323 4115325 4115346, overlap 4115322 4115327 GGTCGAGATAAACCA CATCGCCACG CGG CGTGGAGATG GTGTTGCCTTTACGC TERM 4836 4115325 - 4115347 + g 72 -12 -2.51888 | opp_overlap 4115322 4115325 4115327, overlap 4115323 4115346 GGTCGAGATAAACCA CATCGCCACG CGG CGTGGAGATG GTGTTGCCTTTACGC yjeA 4116583 - 4117560 + | lysyl-tRNA synthetase SDY_4400 4118172 - 4117816 - | iso-IS1 ORF2 SDY_4401 4118407 - 4118607 + | hypothetical protein TERM 4837 4118773 - 4118784 + G 100 -2.2 -5.80817 | gap 1, overlap 4118773 AACGTTGGCGCTAAT G-GGC GGT GCCGC TTTTTTTGTATTGAA TERM 4838 4119186 - 4119176 - g 80 -5.4 -5.00616 | GGTTCTGGCAAAAAA GAGT CTT ACTC TTCAGGCGGCTTTAC yjfM 4118639 - 4119277 + | hypothetical protein TERM 4839 4119642 - 4119665 + G 74 -8.2 -3.95036 | gap 1, opp_overlap 4119633 GTACAACGCCGATAC GCCGACCTCGT TGT ATGA-GTCGGC TTATTTCCAGTGGTT yjfC 4119280 - 4120443 + | putative synthetase/amidase TERM 4840 4120512 - 4120475 - f 90 -14.3 -3.14132 | opp_overlap 4120479 TCTTTCTGTCATGAA TCCATGGCAGTGACCAT ACTA ATGGTGACTGCCATTGA TGGAGGGAGACACAG TERM 4841 4120479 - 4120508 + F 86 -13.7 -3.14132 | opp_overlap 4120475 TCTGTCATGAATCCA TGGCAGTGACCAT ACTA ATGGTGACTGCCA TTGATGGAGGGAGAC TERM 4842 4120873 - 4120885 + G 100 -10.5 -4.66537 | CCGGAGCATTTGTGG CGCGC GCG GCGCG TTTTATGTTGCACGC TERM 4843 4121647 - 4121637 - g 74 -8.2 -3.9392 | GCCGATGCCAAAGAA GCCC TGT GGGC GCGCTTATTTACGCC aidB 4120512 - 4122140 + | isovaleryl CoA dehydrogenase SDY_4405 4122359 - 4122105 - | hypothetical protein SDY_4406 4122554 - 4122949 + | iso-IS1 ORF2 insA 4123058 - 4123333 + | IS1 ORF1 insB 4123378 - 4123755 + | IS1 ORF2 TERM 4844 4123793 - 4123812 + T 72 -6.4 -4.3534 | opp_overlap 4123794, overlap 4123794 GCTATAGACAAAAAA ACCATCCA AATC TGGATGGC TTTTCATAATTCAGA TERM 4845 4123811 - 4123794 - T 100 -9.9 -5.76633 | opp_overlap 4123793 4123794 CTATAGACAAAAAAA CCATCCA AATC TGGATGG CTTTTCATAATTCAG TERM 4846 4123794 - 4123811 + T 71 -9.9 -3.20722 | opp_overlap 4123794, overlap 4123793 CTATAGACAAAAAAA CCATCCA AATC TGGATGG CTTTTCATAATTCAG yjfH 4124563 - 4123832 - | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 4847 4124349 - 4124379 + g 74 -6 -4.4648 | opp_overlap 4124356 CCTGGCTTCACGCGG GCGATAATGCCCTG ATG CACGGCACCGTCGC TTTTCTCGTCGAGAT TERM 4848 4124444 - 4124419 - G 76 -10.5 -3.36492 | gap 1, overlap 4124420 TTGCCAACTGGATAA CCACGCCC-TGA GAC TCAAGGGCGTGA ATCAGCGGTAACAGA TERM 4849 4124443 - 4124420 - G 73 -11.8 -2.61681 | gap 1, overlap 4124419 TGCCAACTGGATAAC CACGCCC-TGA GAC TCAAGGGCGTG AATCAGCGGTAACAG TERM 4850 4124737 - 4124717 - R 77 -11.2 -3.20723 | TTGTCAGCAATCTAA CCCTCTTC TGTTT GAAGAGGG TAATGATCACTCTGC vacB 4127173 - 4124744 - | exoribonuclease R TERM 4851 4127050 - 4127074 + g 75 -5.7 -4.71482 | gap 1, overlap 4127050 CAATGTGCAGTTCTA CC-GCCAGCT CATCAC GGCTGGCCGG TTTTTCACGTTTGGT yjeB 4127637 - 4127212 - | transcriptional repressor NsrR TERM 4852 4127438 - 4127452 + g 74 -2.7 -5.00616 | overlap 4127439 CTCGCCGGTTTACCC AGGCG AATGC CGCCA TTTTTTCCACGAACA TERM 4853 4127839 - 4127800 - R 87 -14.4 -2.83409 | gap 1 CAGCAATGTATCACA CTGTTA-GCCCGGCAGGCA AAA TACCTGCCAGGCGTACCAG AATTACGCGTCGAAC purA 4129140 - 4127842 - | adenylosuccinate synthetase TERM 4854 4128625 - 4128657 + g 72 -5.6 -4.56775 | opp_overlap 4128621 4128625, overlap 4128622 GTAGTAGTTAACCAA CTGGAAGTTGTGAT ATTCC ATCACTTCTTTCAG TTTTTCAGCGAAGGT TERM 4855 4128770 - 4128780 + g 74 -8.2 -3.86194 | overlap 4128769 4128776 GTGCCGATCGCTTTC GCGC CAC GCGC TTTCTCACGCGCGTT yjeT 4129441 - 4129244 - | hypothetical protein TERM 4856 4129466 - 4129494 + r 87 -9.6 -4.19678 | gap 1, opp_overlap 4129467, overlap 4129467 TTATAGAAAAAGAAA ACCACCGACATCC CTGA GGATG-CGGTGGC TTTATTGACCTGTAC TERM 4857 4129467 - 4129493 + r 82 -13.1 -3.11325 | gap 1, opp_overlap 4129467, overlap 4129466 TATAGAAAAAGAAAA CCACCGACATCC CTGA GGATG-CGGTGG CTTTATTGACCTGTA TERM 4858 4129493 - 4129467 - R 100 -13.1 -5.38839 | gap 1, opp_overlap 4129467 4129466 TATAGAAAAAGAAAA CCACCGACATCC CTGA GGATG-CGGTGG CTTTATTGACCTGTA hflC 4130527 - 4129523 - | FtsH protease regulator HflC hflK 4131789 - 4130530 - | FtsH protease regulator HflK TERM 4859 4130558 - 4130577 + g 81 -12.8 -3.1994 | CGCTGGTAGTCGTTA CGCTGCGC GTTG GCGCGGCG TTGGTCCATAATATC TERM 4860 4130777 - 4130790 + g 75 -5.3 -4.69664 | ACCAGCACTTTGCGG GTGTT ACCC AACAC TTTTTCCATCGTCTC TERM 4861 4131472 - 4131483 + g 70 -7.2 -4.03811 | opp_overlap 4131460 AAAGCGTGTTACCAC GCCG CGTT CGGC TTCTTTAATGGTATA TERM 4862 4131542 - 4131528 - G 72 -5.6 -4.53034 | CCCAGATAATGAAAA TCGCTG CCG CTGCGA TGGTAACGACACGAC hflX 4133155 - 4131875 - | putative GTPase HflX TERM 4863 4132111 - 4132147 + g 90 -9.5 -4.4768 | overlap 4132134 AAAGCTGTGGTATCC CCGCTCCG-GTCTGTGC GGAAA GC-CAGACACGGATCGG TTTGTTCTCTTCGTC TERM 4864 4132262 - 4132274 + g 71 -3.3 -4.77165 | TTCAAGAACCGTATT CACCG CTT CGATG TTTTCTTGTACACGC hfq 4133539 - 4133231 - | RNA-binding protein Hfq TERM 4865 4133308 - 4133318 + g 72 -8.2 -3.78778 | overlap 4133300 AGTTACTGCTGGTAC CGCC ACC GGCG TTGTTACTGTGATGA TERM 4866 4133511 - 4133484 - G 81 -12.8 -3.14528 | gap 1, opp_overlap 4133483 4133479, overlap 4133476 ATAGAAACTGGAACA CGTTCCCG-ACGC AGT GCGTTCAGGAACG GATCTTGTAAAGATT miaA 4134575 - 4133625 - | tRNA delta(2)-isopentenylpyrophosphate transferase mutL 4136415 - 4134568 - | DNA mismatch repair protein TERM 4867 4134897 - 4134909 + g 74 -3.3 -4.91109 | TACCCAATTCCGCCA GGGCA GAC TGCGC TTTTTCTAATGCCGA TERM 4868 4134995 - 4134981 - G 71 -9.2 -3.53091 | ACGGCTGGGCGCAAA CGGGCG CTT CACCCG GCGTCAATTGTGCCT TERM 4869 4135125 - 4135158 + g 85 -7.3 -4.78661 | overlap 4135126 4135128 CAAAACTCTGACTGT TCGCCGCAAGTGCAG GTTC CTGCGGTTCCGGCGC TTTTGGTTTTTGCAT TERM 4870 4135126 - 4135157 + g 78 -10.8 -3.4557 | overlap 4135125 4135128 AAAACTCTGACTGTT CGCCGCAAGTGCAG GTTC CTGCGGTTCCGGCG CTTTTGGTTTTTGCA TERM 4871 4135128 - 4135164 + g 72 -4.9 -4.65895 | overlap 4135126 4135125 AACTCTGACTGTTCG CCGCAAGTGCAGGTTCC TGC GGTTCCGGCGCTTTTGG TTTTTGCATCGGCGC TERM 4872 4135344 - 4135354 + g 77 -8.2 -4.09685 | opp_overlap 4135330 AGTGATTGCGCCCCG CCGC CAC GCGG TTTTCCGGAATGGCA amiB 4137762 - 4136425 - | N-acetylmuramoyl-l-alanine amidase II yjeE 4138242 - 4137781 - | putative ATPase TERM 4873 4139218 - 4139232 + r 72 -9.2 -3.53012 | CGTTGATCACCGCGC CTGGCG TAG CGCCGG TTTCAGCCAGCAGGC SDY_4422 4139814 - 4139419 - | iso-IS1 ORF2 TERM 4874 4140146 - 4140203 + G 90 -12.9 -3.56042 | opp_overlap 4140148 4140153 4140157, overlap 4140147 4140147 4140157 CCGCATTATACATCA GATTCAACTAATTAGAGGCATCACCGT GTAT GCGGTGATGCTTCCAATTAGTAGAACA TGTGTTTTTCAATAA TERM 4875 4140147 - 4140202 + G 100 -16.4 -2.72902 | opp_overlap 4140148 4140153 4140157, overlap 4140146 4140147 4140157 CGCATTATACATCAG ATTCAACTAATTAGAGGCATCACCGT GTAT GCGGTGATGCTTCCAATTAGTAGAAC ATGTGTTTTTCAATA TERM 4876 4140201 - 4140148 - g 100 -19.2 -2.89971 | opp_overlap 4140147 4140146 4140147 4140157, overlap 4140153 4140157 GCATTATACATCAGA TTCAACTAATTAGAGGCATCACCG TGTATG CGGTGATGCTTCCAATTAGTAGAA CATGTGTTTTTCAAT TERM 4877 4140196 - 4140153 - g 100 -17.7 -3.15708 | opp_overlap 4140147 4140146 4140147 4140157, overlap 4140148 4140157 ATACATCAGATTCAA CTAATTAGAGGCATCACCG TGTATG CGGTGATGCTTCCAATTAG TAGAACATGTGTTTT TERM 4878 4140157 - 4140192 + G 85 -13.4 -3.15249 | opp_overlap 4140153 4140148 4140157, overlap 4140147 4140146 4140147 ATCAGATTCAACTAA TTAGAGGCATCACCGT GTAT GCGGTGATGCTTCCAA TTAGTAGAACATGTG TERM 4879 4140192 - 4140157 - g 83 -12.7 -3.3941 | opp_overlap 4140157 4140147 4140146 4140147, overlap 4140153 4140148 ATCAGATTCAACTAA TTAGAGGCATCACCG TGTATG CGGTGATGCTTCCAA TTAGTAGAACATGTG SDY_4423 4140009 - 4140218 + | hypothetical protein SDY_4424 4140588 - 4140193 - | iso-IS1 ORF2 TERM 4880 4141601 - 4141615 + G 72 -10 -3.32844 | opp_overlap 4141600 4141599 GAAAAACCCCAAACT CGGCTA TGT TAGCCG TTATGCGCTGGGCCG yjeS 4141308 - 4142447 + | hypothetical protein TERM 4881 4142527 - 4142505 - T 76 -4.9 -4.78753 | overlap 4142494 4142507 TCAAGACGAATAAAA TCGTCAAGT GATCG ACTCGACAA AACGGAATCTTAATT TERM 4882 4142693 - 4142666 - T 77 -3.4 -5.27206 | gap 1, overlap 4142670 CAGAGACAACAAAAA CCAGCAATAACGC ATC GCGTCGCTG-TGG ATATTTTATTGATAG TERM 4883 4142749 - 4142765 + T 73 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4884 4142860 - 4142876 + T 73 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4885 4142914 - 4142927 + T 72 -6.7 -4.28049 | CCGCTTGGGTGGTCT GTGCT TTGC AGCAC TTTTCAAATTTTGGA TERM 4886 4142972 - 4142988 + T 73 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4887 4143105 - 4143123 + T 72 -3.2 -4.9792 | CCCTCTGCAACCCCC CTAAAAAA TTT TTTTTGAG TTTTTATCTCAAGTG yjeR 4143770 - 4143225 - | oligoribonuclease yjeQ 4143865 - 4144917 + | ribosome-associated GTPase psd 4145014 - 4145982 + | phosphatidylserine decarboxylase TERM 4888 4146727 - 4146696 - g 76 -12.2 -2.50398 | overlap 4146695 4146693 4146700 TAATCAATTGAACAG CCAACGCCAGCTTG AGGC CGAGCGGGCGCTGG AAAGCACCGAATTGC TERM 4889 4148821 - 4148800 - g 72 -5.7 -4.56775 | ATCCTGTTCGAAAAA CCGATTCGC ATTG GCGATACGG TAACGATCCGCGATC yjeP 4146004 - 4149327 + | hypothetical protein TERM 4890 4149371 - 4149336 - T 74 -10.6 -3.21912 | gap 1, opp_overlap 4149332 4149349 TTTGTAATGCATGAA GCTGCCAAATGATGTCA ACG TGGC-TCATTTAGCAGC TTAACATCATCTTCA TERM 4891 4149428 - 4149467 + T 100 -14.5 -3.8647 | gap 1, opp_overlap 4149437 TCCATACGCATTACT TCCTGACAACTCATCGCC GGAGA GACGATGAGTTG-CAGGA TTTCATATGATCAGT TERM 4892 4149459 - 4149437 - T 71 -9.9 -3.2963 | opp_overlap 4149428 ATTACTTCCTGACAA CTCATCGCC GGAGA GACGATGAG TTGCAGGATTTCATA yjeM 4150959 - 4149478 - | putative transport TERM 4893 4150454 - 4150440 - G 83 -5.8 -4.91084 | CATTTAATAACAAAA TAGTAA TGC TTACTA ACAGCAATACTAAAT TERM 4894 4150939 - 4150960 + g 71 -3 -4.7871 | opp_overlap 4150932 4150939 4150941, overlap 4150941 4150956 AGTAAAGATCATCAA TATGAGTC CTATCA GACTCATC TTTTTGGTGATGCTT SDY_4435 4151375 - 4150980 - | iso-IS1 ORF2 SDY_4436 4151570 - 4151785 + | hypothetical protein insB 4152295 - 4151918 - | IS1 ORF2 insA 4152615 - 4152340 - | IS1 ORF1 TERM 4895 4153334 - 4153353 + r 100 -13.6 -4.11295 | opp_overlap 4153334 TCCTGAAACGAAAAA CGGACCTC CGTG GAGGTCCG TTTATATGAATTTGG TERM 4896 4153353 - 4153334 - R 100 -13.6 -4.98531 | opp_overlap 4153334 TCCTGAAACGAAAAA CGGACCTC CGTG GAGGTCCG TTTATATGAATTTGG TERM 4897 4153399 - 4153415 + r 73 -10.9 -2.62616 | opp_overlap 4153398 4153396 4153393 TCGAACCAAGGACAC GGGGATT TTC AATCCCC TGCTCTACCGACTGA yjdC 4154147 - 4153629 - | hypothetical protein dipZ 4155857 - 4154160 - | thiol:disulfide interchange protein precursor cutA 4156171 - 4155833 - | divalent-cation tolerance protein CutA TERM 4898 4156257 - 4156278 + r 80 -12.9 -2.56164 | opp_overlap 4156258, overlap 4156256 GTCGGCGGGAAAGAA AGCGGGGCG TGAA CGCCCCGCG ATTGGTCATTACAGC TERM 4899 4156277 - 4156258 - R 100 -16.4 -4.41348 | opp_overlap 4156257 4156256 TCGGCGGGAAAGAAA GCGGGGCG TGAA CGCCCCGC GATTGGTCATTACAG dcuA 4157588 - 4156287 - | anaerobic C4-dicarboxylate transporter TERM 4900 4157679 - 4157660 - R 100 -13.6 -5.55769 | opp_overlap 4157660 GCTCACAATAAAAAA GGCACGTC ATCT GACGTGCC TTTTTTATTTGTACT TERM 4901 4157660 - 4157679 + r 100 -13.6 -5.73978 | opp_overlap 4157660 GCTCACAATAAAAAA GGCACGTC ATCT GACGTGCC TTTTTTATTTGTACT aspA 4159187 - 4157706 - | aspartate ammonia-lyase TERM 4902 4158571 - 4158583 + g 74 -7.7 -4.13282 | overlap 4158562 ACTGCGTCCTGCAGC TGGGT ACG ACCCA TTTTCAGGATGTCCT TERM 4903 4159006 - 4159021 + g 71 -2.6 -4.92757 | gap 1, opp_overlap 4159006, overlap 4159001 ATACCGCGAACAAAT TCAG-GA ATA TCACTGA TTTTGTTGTTGCTGA TERM 4904 4159440 - 4159460 + H 73 -10.4 -3.01712 | TCGCAACCCATTCAG GTAGCCGG GTTAA CCGGCTGC TATTACAGGAGAAAC fxsA 4159478 - 4159954 + | FxsA TERM 4905 4159963 - 4159995 + T 78 -4.8 -5.0925 | opp_overlap 4159956 4159963 GGATTAATGTCGAAA CGCCGGATTATG TGGTTATGC CATTTTCCGGCG TTTTTCGTTTTGGGG SDY_4446 4160418 - 4160023 - | iso-IS1 ORF2 yjeH 4162000 - 4160753 - | inner membrane protein YjeH TERM 4906 4161874 - 4161862 - G 77 -6.9 -4.56314 | opp_overlap 4161867, overlap 4161863 CTAAGATAATCAAAA CGGGC CAC GCCCA CAGGCTGTTATTGCC TERM 4907 4161965 - 4161979 + g 70 -7.1 -4.10744 | opp_overlap 4161955 TAGCAGGCCAATGCC CTGGG CCAGC CCCAG TTCTTGTTTGAGTCC groES 4162276 - 4162569 + | co-chaperonin GroES groEL 4162613 - 4164259 + | chaperonin GroEL TERM 4908 4164312 - 4164289 - f 84 -8 -4.83246 | opp_overlap 4164289 GCAGAAATAAACAAA CCCCCGGGCA GAAA TGTCTGGGGG TTTTTCTTTTGGTCA TERM 4909 4164289 - 4164312 + F 100 -12.4 -5.50723 | opp_overlap 4164289 GCAGAAATAAACAAA CCCCCGGGCA GAAA TGTCTGGGGG TTTTTCTTTTGGTCA yjeI 4164364 - 4164750 + | hypothetical protein SDY_4452 4165473 - 4165868 + | iso-IS1 ORF2 ytfJ 4166858 - 4166304 - | hypothetical protein TERM 4910 4166598 - 4166623 + g 71 -9.1 -3.51588 | overlap 4166588 ATCGTGCGGTAACTT CGCTGATTTAA TCGC TTCAATCAGCG TTGCGTTTTTCTCTT ytfK 4167144 - 4167389 + | hypothetical protein TERM 4911 4167424 - 4167457 + T 71 -7.5 -3.89614 | gap 1, opp_overlap 4167429 4167431, overlap 4167426 4167431 AAAGTGCTATGCAGT AATAAGACGGCTCCTG ATT CAGGAGCCGT-TGATG TTTCTGGGGGTTACG TERM 4912 4167426 - 4167455 + T 75 -10.1 -3.5362 | gap 1, opp_overlap 4167429 4167431, overlap 4167424 4167431 AGTGCTATGCAGTAA TAAGACGGCTCCTG ATT CAGGAGCCGT-TGA TGTTTCTGGGGGTTA TERM 4913 4167453 - 4167429 - T 100 -14.3 -3.73647 | opp_overlap 4167426 4167424 4167431, overlap 4167431 GCTATGCAGTAATAA GACGGCTCCTG ATT CAGGAGCCGTT GATGTTTCTGGGGGT TERM 4914 4167431 - 4167451 + T 100 -16.9 -3.50335 | opp_overlap 4167429 4167431, overlap 4167426 4167424 TATGCAGTAATAAGA CGGCTCCTG ATT CAGGAGCCG TTGATGTTTCTGGGG TERM 4915 4167451 - 4167431 - T 100 -16.9 -3.44998 | opp_overlap 4167431 4167426 4167424, overlap 4167429 TATGCAGTAATAAGA CGGCTCCTG ATT CAGGAGCCG TTGATGTTTCTGGGG ytfL 4168811 - 4167468 - | putative transport protein msrA 4169772 - 4169134 - | methionine sulfoxide reductase A TERM 4916 4169903 - 4169916 + H 70 -2.4 -5.06816 | TAGTCTGCTTTTTAA TCCA TATTAC TGGA TTTTTGTTAAGCCGT TERM 4917 4171297 - 4171308 + G 72 -4.4 -4.63218 | GATCCGCACACTGTA CGAT CGCC ATCG TTTTGTTACACGCGG ytfM 4169978 - 4171711 + | hypothetical protein TERM 4918 4172318 - 4172307 - g 72 -5.8 -4.43272 | ACCGAAAATTGAAAA TCCG CAGC CGGA GGAAAAGCCGCTCGG TERM 4919 4175437 - 4175458 + G 70 -10.9 -2.70315 | overlap 4175435 4175434 CTATATCTGGAAGCC GTGTCTGGT GTAG ACCAGGCAC TGGATTTGCTCTATC ytfN 4171708 - 4175487 + | hypothetical protein TERM 4920 4175567 - 4175553 - g 72 -11.4 -2.52834 | opp_overlap 4175552 4175551, overlap 4175529 4175534 4175552 CACTGGATGACCAAT GCCCAG TTA CTGGGC GATTTCAGTATCGAT ytfP 4175490 - 4175831 + | hypothetical protein TERM 4921 4175868 - 4175835 - f 87 -11.1 -3.86312 | opp_overlap 4175841 4175843, overlap 4175840 4175843 AGGGATAAGTAATAA TAAAAGCACGCCACC TTCG GGTGGCGTTGTTTTA TGCGATGTATCTCGC TERM 4922 4175863 - 4175840 - f 83 -6.6 -4.95167 | opp_overlap 4175841 4175843, overlap 4175835 4175843 TAAGTAATAATAAAA GCACGCCACC TTCG GGTGGCGTTG TTTTATGCGATGTAT TERM 4923 4175841 - 4175863 + F 90 -9.9 -4.4195 | gap 1, opp_overlap 4175840 4175835 4175843, overlap 4175843 AAGTAATAATAAAAG CA-CGCCACC TTCG GGTGGCGTTG TTTTATGCGATGTAT TERM 4924 4175843 - 4175860 + F 95 -12.7 -4.32067 | opp_overlap 4175840 4175835 4175843, overlap 4175841 GTAATAATAAAAGCA CGCCACC TTCG GGTGGCG TTGTTTTATGCGATG TERM 4925 4175860 - 4175843 - f 85 -12.7 -3.32865 | opp_overlap 4175843 4175841, overlap 4175840 4175835 GTAATAATAAAAGCA CGCCACC TTCG GGTGGCG TTGTTTTATGCGATG chpS 4176037 - 4176294 + | antitoxin ChpS chpB 4176288 - 4176638 + | toxin ChpB ppa 4177245 - 4176715 - | inorganic pyrophosphatase TERM 4926 4177743 - 4177727 - R 71 -7.3 -4.12902 | GAATTACGTTGAAAA TTGCCGA TGG TCAGCAA AAGCAGGAAAACCAG SDY_4464 4178464 - 4178069 - | iso-IS1 ORF2 TERM 4927 4179925 - 4179964 + H 72 -2.7 -5.08824 | AAAAGTATTTTCCGA GGCTCCTCCTTTCATTT TGTCCC ATGTGTTGGGAGGGGCC TTTTTTACCTGGAGA TERM 4928 4182164 - 4182143 - H 93 -14.5 -3.30619 | opp_overlap 4182143 AATTAGCTCGTACAA GGGAAGTGG CTTG CCACTTCCC TTTTTTGCTCATAAG TERM 4929 4182143 - 4182164 + H 100 -14.5 -5.1861 | opp_overlap 4182143 AATTAGCTCGTACAA GGGAAGTGG CTTG CCACTTCCC TTTTTTGCTCATAAG TERM 4930 4182801 - 4182788 - g 79 -2.3 -5.28778 | overlap 4182789 AGTATGGATAAAAAA GCGCT CACT AGCGT GAAATTTGCCTTACC yjdL 4182188 - 4183645 + | putative peptide transporter SDY_4469 4184811 - 4184098 - | IS600 ORF2 TERM 4931 4185346 - 4185326 - g 75 -4.6 -4.7373 | CTACCTCAGGAAAAA CCGTCCTG AAAAA CCAGACGG CAGACGGGCTGTATT SDY_4470 4185270 - 4186106 + | IS911 ORF2 TERM 4932 4186536 - 4186526 - f 73 -4 -4.87037 | AACAGAGATTAAAAA GTTT GAG AAAC GCGATCTGGCACAGG TERM 4933 4186706 - 4186719 + F 70 -5.3 -4.55093 | opp_overlap 4186706 AACTGTTAAGAAGAT CACAA TTCA TTGTG TTTATTATTGTCTGG TERM 4934 4186910 - 4186925 + F 72 -2.6 -5.01732 | overlap 4186916 CAAGTTAGGCTAAGC CTTATA CCCC TGTAAG TTTTTTACAGGGGTT TERM 4935 4186916 - 4186938 + F 100 -12.8 -5.24129 | overlap 4186910 AGGCTAAGCCTTATA CCCCTGTAAG TTT TTTACAGGGG TTTTTTGTGCACAGA TERM 4936 4186975 - 4186957 - f 100 -11.6 -4.52589 | TTTGTGCACAGAAAA CCCCCTGC TAG GCTGGGGG TTCCGGAAAGCTTTC SDY_4472 4187233 - 4187550 + | transposase TERM 4937 4187629 - 4187653 + F 87 -9.9 -4.30719 | opp_overlap 4187632, overlap 4187631 4187632 ATAGGCGCATTTGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTAAAAAAA TERM 4938 4187631 - 4187651 + F 93 -12.5 -3.75817 | opp_overlap 4187632, overlap 4187629 4187632 AGGCGCATTTGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTAAAAA TERM 4939 4187650 - 4187632 - f 100 -16 -4.62069 | opp_overlap 4187631 4187629 4187632 GGCGCATTTGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTAAAA TERM 4940 4187632 - 4187650 + F 93 -16 -2.85008 | opp_overlap 4187632, overlap 4187631 4187629 GGCGCATTTGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTAAAA TERM 4941 4187688 - 4187669 - f 89 -6.4 -5.44119 | gap 1 TTTATTGTAAAAAAA GCCCGTCTA TGG CAG-CGGGC AAACGCATGAGAGTA SDY_4473 4188323 - 4188718 + | iso-IS1 ORF2 SDY_4474 4188742 - 4189452 + | putative transposase SDY_4475 4190324 - 4190076 - | hypothetical protein SDY_4476 4190519 - 4190914 + | iso-IS1 ORF2 TERM 4942 4192002 - 4191986 - g 71 -3 -4.77036 | overlap 4191987 TCCGACCAGCAAAAA CTCGAT TCCTT ATCGAA ACAAGAAATTAGTGT evgA 4191566 - 4192180 + | DNA-binding transcriptional activator EvgA TERM 4943 4192484 - 4192459 - g 75 -5.5 -4.60924 | overlap 4192448 TAAATCTTTTAAAAA GAGCGTTAAAT ATCA AATTAACACTC CGGGAATACGCAGAT TERM 4944 4193422 - 4193403 - g 100 -4.3 -5.66989 | opp_overlap 4193403 CAAACATTAAAAAAA GGAATGA AAGTTG CCATTCC ATATTATTATGAGCT TERM 4945 4194316 - 4194297 - g 70 -3.6 -4.65722 | gap 1, overlap 4194305 GTAGAGAGAAATAAA GCGATCAAT GCA ACTG-TCGC AAAAAGCCAGTTTCT TERM 4946 4194334 - 4194322 - g 90 -9.1 -4.58283 | CAACTGTCGCAAAAA GCCAG TTT CTGGC AACAATGAGTCACGA TERM 4947 4195680 - 4195666 - g 70 -6.4 -4.15832 | ATCAATTAGAAATAA CACCTG TTT CAGATG ACAGTAAGCCTGAAA evgS 4192185 - 4195778 + | hybrid sensory histidine kinase in two-component regulatory system with EvgA TERM 4948 4195785 - 4195811 + T 79 -10.9 -3.34517 | opp_overlap 4195782 4195783, overlap 4195783 AATGACTAAATAGCG GCTCCCACAAT GTTCA AATGTGGGAGC TATTTACCAGCACAT SDY_4479 4197476 - 4195938 - | ISSfl4 ORF3 TERM 4949 4197476 - 4197499 + r 72 -9 -3.48276 | gap 1, opp_overlap 4197479, overlap 4197479 AAGAGATGTCGTTCA TAAGCCCG-TA TTT TACCGGGCTTA TTCTGTGACAACCAG SDY_4480 4197873 - 4197526 - | ISSfl4 ORF2 TERM 4950 4198245 - 4198218 - H 88 -12.8 -3.61398 | CCTGTCTGGCAACAA TCGCGCCCATCT ATAT AGATGGACACGA ACGATGAATTCCCAG TERM 4951 4198585 - 4198597 + H 72 -9.1 -3.62046 | GCTAAGCAGGCGTTA CAGCC TGG GGCTG TTGTTGCCCGGATCG SDY_4481 4198920 - 4199255 + | ISSfl4 ORF2 SDY_4482 4199275 - 4199685 + | hypothetical protein insA 4199817 - 4200092 + | IS1 ORF1 insB 4200137 - 4200514 + | IS1 ORF2 SDY_4485 4200709 - 4201422 + | IS600 ORF2 SDY_4486 4201622 - 4201419 - | hypothetical protein TERM 4952 4202041 - 4202059 + H 86 -3.1 -5.68489 | overlap 4202042 TTCCATTCCGTTTTA GCACTCT TCAGT AGAGTGA TTTTTTGTTCTTGTC TERM 4953 4202264 - 4202282 + H 72 -5.2 -4.63184 | opp_overlap 4202247, overlap 4202265 CATGACAGATTTCGC TGCCGTGA CTG TCACCGCG TTTTTCAGCTCACTT SDY_4487 4202473 - 4202868 + | iso-IS1 ORF2 TERM 4954 4202913 - 4202893 - T 87 -9.7 -4.33182 | TCACCCAGAAAATAA CCCCAGG GTAATCA CCTGGGG AAGGAACACAGTGTT SDY_4488 4203927 - 4202980 - | hypothetical protein SDY_4489 4204569 - 4204174 - | iso-IS1 ORF2 TERM 4955 4205162 - 4205138 - R 100 -12.9 -5.35721 | ATATAATAACAAAAA TCCTCCAGCCT TGT AGGCCAGAGGA TAAAATACTTAATTG SDY_4490 4206093 - 4205317 - | IS600 ORF2 SDY_4491 4206536 - 4206234 - | IS600 ORF1 SDY_4492 4206637 - 4206981 + | hypothetical protein SDY_4493 4207508 - 4206987 - | IS911 ORF2 TERM 4956 4207395 - 4207406 + gT 77 -5.8 -4.63218 | opp_overlap 4207391 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SDY_4494 4207827 - 4207477 - | IS911 ORF2 TERM 4957 4207748 - 4207768 + gr 72 -4.6 -4.65838 | AATACAGCCCGTCTG CCGTCTGG TTTTT CAGGACGG TTTTTCCAGTATCTG SDY_4495 4208156 - 4207854 - | IS911 ORF1 SDY_4496 4208554 - 4208949 + | iso-IS1 ORF2 TERM 4958 4209214 - 4209227 + F 79 -3.1 -5.4505 | GAACTGAAAGCCCGT CCTAT AATG GTAGG TTTTTTCTTCACCGG TERM 4959 4210733 - 4210745 + G 77 -3.3 -5.10077 | GTGCGTAAATCCCGC CCGGG CAT TCTGG TTTTTTGCGCTATTT yicL 4210361 - 4211284 + | putative permease transporter nlpA 4212106 - 4211288 - | cytoplasmic membrane lipoprotein-28 insB 4212566 - 4212189 - | IS1 ORF2 insA 4212886 - 4212611 - | IS1 ORF1 TERM 4960 4213041 - 4213099 + r 93 -15.5 -2.76456 | gap 1, opp_overlap 4213037 4213036 4213061, overlap 4213036 4213061 GAATCATGAATGTTA G-CCCGAGCTAACCTGTTAAAGGTGCAA AAGA TTGCACCTTTTTCAGATTACCTCGGGCC TGGTTACGTCGCTTT TERM 4961 4213078 - 4213061 - R 75 -9.9 -3.5774 | opp_overlap 4213041 4213061 AGCTAACCTGTTAAA GGTGCAA AAGA TTGCACC TTTTTCAGATTACCT TERM 4962 4213061 - 4213078 + r 93 -9.9 -4.67234 | opp_overlap 4213061, overlap 4213041 AGCTAACCTGTTAAA GGTGCAA AAGA TTGCACC TTTTTCAGATTACCT yjcE 4214768 - 4213119 - | hypothetical protein TERM 4963 4214243 - 4214217 - G 72 -7.4 -3.87815 | gap 1, overlap 4214218 GGCTACTTTCATAAA TTCGACCGTCG CACCGC CGACGGT-GAA GATCATCGTCCCCAT TERM 4964 4214618 - 4214601 - G 74 -2.7 -4.94672 | AAACAAGACTAAAAA GAGTTCA GGAT CAAACTC CACATGCAAACCAAA TERM 4965 4214903 - 4214872 - R 100 -12.4 -4.37658 | opp_overlap 4214878, overlap 4214878 AATGTGCGGAGAAAA TAAAAACGGGCAGC CATT GCCACCCGTTTTCA GAATCCGATGAAAGA TERM 4966 4214897 - 4214878 - R 100 -9.2 -5.54907 | opp_overlap 4214878, overlap 4214872 CGGAGAAAATAAAAA CGGGCAGC CATT GCCACCCG TTTTCAGAATCCGAT yjcD 4216268 - 4214919 - | hypothetical protein TERM 4967 4216100 - 4216112 + g 78 -10.5 -3.53811 | opp_overlap 4216091 CGAAAACTGCCGCAG GCGGG AAG CCCGC TTTACCCAACATGCC TERM 4968 4216794 - 4216818 + r 100 -14.4 -4.78753 | opp_overlap 4216794 AGACCGGAAAACAAA CTAAAGCGCC CTTGT GGCGCTTTAG TTTTGTTCATCTTCC TERM 4969 4216818 - 4216794 - R 100 -14.4 -4.67651 | opp_overlap 4216794 AGACCGGAAAACAAA CTAAAGCGCC CTTGT GGCGCTTTAG TTTTGTTCATCTTCC soxR 4217279 - 4216815 - | redox-sensing activator of soxS soxS 4217365 - 4217688 + | DNA-binding transcriptional regulator SoxS TERM 4970 4217694 - 4217723 + F 83 -12.9 -3.19389 | CCGCCTGTAGTTTTA TTGCCCGCGCG TTAACTCC CGCGCGGGTAA TTGCTCCATCCATTG SDY_4506 4218256 - 4218651 + | iso-IS1 ORF2 TERM 4971 4218890 - 4218910 + F 79 -4.1 -5.1523 | opp_overlap 4218890 AGTTCACAAAATTAA TGAAACA AACAGAG TGTTTCA TTTTTGTGTTCTGCA yjcB 4218944 - 4219294 + | hypothetical protein TERM 4972 4219301 - 4219323 + T 100 -13.5 -5.28176 | opp_overlap 4219304 TTGACCTGATACGTA GAAGCCTCC ATAAC GGAGGCTTC TTTTTTATGGCTGGC TERM 4973 4219320 - 4219304 - T 73 -10.1 -3.39505 | opp_overlap 4219301 ACCTGATACGTAGAA GCCTCCA TAA CGGAGGC TTCTTTTTTATGGCT ssb 4219929 - 4219393 - | single-strand DNA-binding protein uvrA 4220183 - 4223005 + | excinuclease ABC subunit A TERM 4974 4223013 - 4223031 + T 100 -12.4 -4.55128 | TGCTGTAATCGTTAA GGCCGCTT TCC GAGCGGCC TTTTCCTTTCAGAGT yjbR 4223396 - 4223040 - | hypothetical protein TERM 4975 4223228 - 4223242 + g 74 -7.8 -4.07568 | overlap 4223227 GACGTAGCAGCTCCG CCAGCT CCG GGCTGG TTTTCAGCGAAACAG yjbQ 4223816 - 4223400 - | hypothetical protein TERM 4976 4223926 - 4223892 - R 86 -4.3 -5.52384 | gap 2, opp_overlap 4223898, overlap 4223897 GTGTGATTAAAAAAA CAGCATTCGGGAGAGTG TCA CGCTCTCCCGC-T-CTG TCAGTATTCTGAATT TERM 4977 4223898 - 4223922 + r 78 -12.1 -2.95894 | opp_overlap 4223897 4223892 TTAAAAAAACAGCAT TCGGGAGAGTG TCA CGCTCTCCCGC TCTGTCAGTATTCTG insB 4224517 - 4224140 - | IS1 ORF2 insA 4224837 - 4224562 - | IS1 ORF1 TERM 4978 4225138 - 4225153 + H 83 -4 -5.40072 | TTCAGATAATCTTCG CTTTCT GGCG AGAAGG TTTTTTTGCCGCGCC SDY_4515 4225939 - 4226121 + | iso-IS1 ORF2 SDY_4516 4226118 - 4226333 + | iso-IS1 ORF2 SDY_4517 4226602 - 4227087 + | hypothetical protein insB 4227576 - 4227190 - | IS1 ORF2 insA 4227896 - 4227621 - | IS1 ORF1 TERM 4979 4228062 - 4228085 + r 100 -14.6 -3.79668 | CAGTTTAATTTCACT GCAGGCTGGG TAAC TCCAGCCTGC TTTCCTGCATTACAT tyrB 4229288 - 4228095 - | aromatic amino acid aminotransferase alr 4230610 - 4229531 - | alanine racemase dnaB 4232078 - 4230663 - | replicative DNA helicase TERM 4980 4231406 - 4231426 + g 100 -6.7 -5.80364 | opp_overlap 4231406 4231405 CGACGATGATCAAAT CCGACGGCT GCA AGCCAGCGG TTTTTTTGTTGAGAT TERM 4981 4232702 - 4232692 - g 88 -8.2 -4.59853 | overlap 4232681 4232693 GGAACCGCGCAAAAA GCGC AGA GCGC GCTAAAAGCGGGCGC qor 4232161 - 4233144 + | quinone oxidoreductase, NADPH-dependent TERM 4982 4233175 - 4233151 - T 100 -10 -4.77775 | opp_overlap 4233153, overlap 4233153 ATTCCATAAAAGAAA TAGGGCTTCC ACCTG GGAAGCCCTT TCTTTTTATAGTTCG TERM 4983 4233153 - 4233173 + T 100 -12.6 -5.00267 | opp_overlap 4233151 4233153 TCCATAAAAGAAATA GGGCTTCC ACCTG GGAAGCCC TTTCTTTTTATAGTT TERM 4984 4233173 - 4233153 - T 95 -12.6 -3.99938 | opp_overlap 4233153, overlap 4233151 TCCATAAAAGAAATA GGGCTTCC ACCTG GGAAGCCC TTTCTTTTTATAGTT pspG 4233552 - 4233310 - | phage shock protein G TERM 4985 4233655 - 4233632 - R 90 -9.5 -4.43681 | overlap 4233633 GATTTAACAGCAAAA CGCCCCGCG ACGGTG CGCAGGGCA TGGTGAATTTGACTA TERM 4986 4233654 - 4233633 - R 74 -10.8 -3.25486 | overlap 4233632 ATTTAACAGCAAAAC GCCCCGCG ACGGTG CGCAGGGC ATGGTGAATTTGACT yjbN 4234723 - 4233686 - | tRNA-dihydrouridine synthase A TERM 4987 4234867 - 4234853 - R 85 -7.2 -5.09259 | CATTGCAAAAGAAAA TTGAGA TCC TCTCAA GGCATGAAGCTCTCA SDY_4526 4235257 - 4235042 - | iso-IS1 ORF2 SDY_4527 4235281 - 4235607 + | hypothetical protein yjbK 4236178 - 4236693 + | zinc uptake transcriptional repressor yjbJ 4236944 - 4236735 - | putative stress-response protein dinF 4238385 - 4237060 - | DNA-damage-inducible SOS response protein TERM 4988 4238444 - 4238421 - R 100 -16 -4.94262 | GAGATGAAAAACAAA CCGCGACGCC AGGC GGCATCGCGG TCTCAGAGATATGTT lexA 4239066 - 4238458 - | LexA repressor dgkA 4239544 - 4239176 - | diacylglycerol kinase plsB 4239715 - 4242138 + | glycerol-3-phosphate acyltransferase TERM 4989 4242263 - 4242280 + T 100 -11.3 -5.1101 | opp_overlap 4242263 GCAGCCCAGAAGAAA GCCGGAT GATC ATCCGGC TTTTTTACATCATCA TERM 4990 4242280 - 4242263 - T 91 -11.3 -4.32177 | opp_overlap 4242263 GCAGCCCAGAAGAAA GCCGGAT GATC ATCCGGC TTTTTTACATCATCA ubiA 4243165 - 4242293 - | 4-hydroxybenzoate octaprenyltransferase ubiC 4243675 - 4243178 - | chorismate pyruvate lyase insA 4244222 - 4244497 + | IS1 ORF1 insB 4244542 - 4244919 + | IS1 ORF2 TERM 4991 4246076 - 4246066 - f 80 -6.8 -4.63932 | TATTGTGTAATAAAA CTGG CAA CCAG CGATTCATCTTTTGG SDY_4540 4246503 - 4246898 + | iso-IS1 ORF2 TERM 4992 4247210 - 4247244 + G 72 -4.8 -4.62772 | opp_overlap 4247210 4247211, overlap 4247211 4247212 TAGTTGTTCATCAAA GTCGCGGAGCTGGAAA GTT TTTCCCGCGCAGCGGA TTTCTTTGCTTTGCC yhjC 4247198 - 4248073 + | putative transcriptional regulator LYSR-type yhjD 4248122 - 4249135 + | hypothetical protein TERM 4993 4249608 - 4249628 + G 79 -9.7 -3.73709 | GTCCTTGTCGCCTCT CTCATTGGC ACG GCCATTGAG TTCTTCGACTTTTAT TERM 4994 4249763 - 4249773 + G 75 -4.6 -4.86773 | CGTCGCGCGCCCCAT TGGC TCT GCCG TTTTTGGTCATTTTG TERM 4995 4250118 - 4250129 + G 70 -5.8 -4.27117 | TTTATGAGCTGGGGC TGGC GTGT GCCA TTTATCTTCTCGGCG TERM 4996 4250505 - 4250485 - g 77 -8.3 -4.07568 | TTGGTCGCCGTAAAA GCATGGTAA TTA TCACCACGC TGATCATCTTGTTCG yhjE 4249527 - 4250849 + | putative transport protein TERM 4997 4250886 - 4250862 - T 76 -8.5 -4.16921 | opp_overlap 4250861 TAATAAGTGTGAAAA GCCTGATGCGC TAC GCTTATCAGGC CTGAATTTCCATACA TERM 4998 4251031 - 4250992 - T 72 -10.2 -2.90751 | gap 1, opp_overlap 4250992 4251000, overlap 4250991 GCCAACAATCTAAAT CTGTTTAATTGCCGGATGT CAG ACATCCGGCAATTAT-CAT CACTTCTTCATCTGC TERM 4999 4251000 - 4251024 + T 100 -17.3 -3.45434 | opp_overlap 4250992 4250991, overlap 4250992 TCTAAATCTGTTTAA TTGCCGGATGT CAG ACATCCGGCAA TTATCATCACTTCTT yhjG 4253106 - 4251031 - | hypothetical protein TERM 5000 4253031 - 4253009 - G 72 -7 -4.1899 | overlap 4253022 CGATTCCAGTCAAAA GTTGCAATCA AAA TGATCGCCAC GACAATCAACAACAA yhjH 4253931 - 4253161 - | EAL domain-containing protein TERM 5001 4254938 - 4254925 - R 79 -3.1 -5.27335 | CTGCCGAAAGAAAAA GTGAT CGAT ACCAC CGCAGCTGGCGACTC TERM 5002 4255138 - 4255107 - R 76 -8 -4.24948 | overlap 4255108 GCAGCATATGCAAAA GGCTGGATAAAGTG TTAC CCCTCTATCCAGCT CATCCATAAATACCT TERM 5003 4255137 - 4255108 - R 77 -11.5 -3.14487 | overlap 4255107 CAGCATATGCAAAAG GCTGGATAAAGTG TTAC CCCTCTATCCAGC TCATCCATAAATACC yhjJ 4256681 - 4255185 - | hypothetical protein TERM 5004 4256735 - 4256718 - R 93 -6.9 -5.7946 | CTGGTAATAAAAAAA CTGCCCG TTGT CGGTCAG TCTAAATGACGTTAA TERM 5005 4256836 - 4256808 - R 90 -9.6 -4.52669 | AAGAAGTGAAATAAA CCTGAACTCTCC CAGGT GGTAAGTTCAGG CACAGGGGTCAATTA TERM 5006 4256889 - 4256860 - R 72 -9.3 -3.59315 | overlap 4256862 TCAATTATGCGCAAA CACCCGCACTC GGGGAAGG GAGTGCGGGCA TAAGTGATGAGATTA TERM 5007 4256887 - 4256862 - R 82 -11.9 -3.37259 | overlap 4256860 AATTATGCGCAAACA CCCGCACTC GGGGAAGG GAGTGCGGG CATAAGTGATGAGAT dctA 4258188 - 4256902 - | C4-dicarboxylate transporter DctA TERM 5008 4257966 - 4257954 - G 74 -7.7 -4.08317 | opp_overlap 4257965 CAATTTCAAAGTAAA GCAGT GCG ACTGC GCCGGTACGACCGAC TERM 5009 4258333 - 4258312 - R 73 -4.4 -4.7657 | opp_overlap 4258316 4258318 CAAAAAGGTTAAAAA GTTTGAGC TGGCTC GCACAAAC CAGCACTTTTTAAAG yhjK 4260326 - 4258371 - | putative phosphodiesterase TERM 5010 4260642 - 4260674 + r 72 -8.4 -3.72324 | gap 1, overlap 4260640 ATAGCCGAAGCCCTG GCTGCTGCCGCCATC GTTG GATTGCCGC-GCAGC TTCTTCCTGCCAGTC TERM 5011 4262585 - 4262606 + r 73 -4.4 -4.8543 | gap 1, opp_overlap 4262585 GCTAACTGGCAGAGA GC-GAGGCG ATAAA CGCTTCAGC TTTTTCTGGCGATTG TERM 5012 4262955 - 4262966 + r 71 -7.2 -4.07868 | ATTCGCCACTGCATT GGCG CGAT CGCC TTTCTGTGAATATGC TERM 5013 4264061 - 4264073 + r 74 -6.9 -4.36914 | opp_overlap 4264035, overlap 4264038 4264042 CTGGCGCTGAACGGC CTGCG CAT CGCGG TTTTGTAAAAAGGGC yhjN 4267348 - 4265009 - | cellulose synthase regulator protein TERM 5014 4265990 - 4266010 + g 84 -11.1 -3.79519 | opp_overlap 4265977 TACCGGAATCCGCAG CAGCAGGCG ATT CGCCTCCTG TTTGCTGCTCAGGTT bcsA 4269977 - 4267359 - | cellulose synthase catalytic subunit TERM 5015 4268703 - 4268692 - G 72 -5.8 -4.33248 | opp_overlap 4268691 GAACCGCAGAAGAAA GTGG CGTC CCAC ATATCGTTGCCATCC yhjR 4270926 - 4270738 - | hypothetical protein TERM 5016 4271449 - 4271436 - R 74 -3.9 -5.01732 | AAGGGCCGGAAAAAA TGAAA TTAT TTTCA ATGCTAAATCATGAA SDY_4557 4272035 - 4271658 - | IS1 ORF2 SDY_4558 4272355 - 4272080 - | IS1 ORF1 SDY_4559 4272859 - 4272464 - | iso-IS1 ORF2 yhjT 4274304 - 4274492 + | hypothetical protein TERM 5017 4275465 - 4275479 + F 72 -2.7 -5.00884 | opp_overlap 4275465 GATGATGGGACATAA CGGCC AGTTC GGCGG TTTTTTGAAAGAAGT TERM 5018 4275828 - 4275816 - f 73 -10.5 -3.01712 | CGTGGTGCCGGAACA CGGCG GCG CGCCG AAAGGCGACAGAATG TERM 5019 4276203 - 4276178 - f 100 -14 -4.81685 | AGTAAGCACGAAAAA GGCCGCAGAG TTTCAC CCCTGCGGCC TGGTCCGGGCGCAAA TERM 5020 4276428 - 4276469 + F 95 -11 -4.60797 | gap 2 TAGGTTCAAGATTAG CCCCCGTGGTGTTGTCAGGT GCAT ACCTG-CAACG-TGCGGGGG TTTTCTCTCTCCAGC TERM 5021 4277597 - 4277607 + G 82 -3.2 -5.2696 | overlap 4277583 ATATCACGCTCATCG CGGT GAT ACTG TTTTTTGCCTTTTCG yhjV 4276837 - 4278108 + | putative transporter protein TERM 5022 4278128 - 4278110 - T 79 -9.5 -3.76402 | opp_overlap 4278110 AGCTGATTGAGTAAA CCGGAGC GCATG GCCCCGG TTTTGTGAGTTAACG TERM 5023 4278110 - 4278128 + T 77 -7.3 -4.4715 | opp_overlap 4278110 AGCTGATTGAGTAAA CCGGAGC GCATG GCCCCGG TTTTGTGAGTTAACG dppF 4279142 - 4278138 - | dipeptide transporter ATP-binding subunit TERM 5024 4278226 - 4278178 - G 78 -7.4 -4.32583 | gap 2, overlap 4278175 4278182 TCAACAGCAAAACAA GCTACCAGTTGACCGCCGTAGTCT TTT AG-CTGCGGCTG-CAACTGGGTGC AGGGGCCGAAGCGCC dppD 4280122 - 4279139 - | dipeptide transporter ATP-binding subunit TERM 5025 4280023 - 4280072 + g 70 -10.7 -2.83403 | gap 1, overlap 4280022 4280065 CAATCCCGACCACTT CGCCCTGTTTTACGCTGTAG-CTG ATG CGGTCTACGGCGCGGAACGGTGCG CTTTCGTCGCCGAAA dppC 4281035 - 4280133 - | dipeptide transporter dppB 4282064 - 4281045 - | dipeptide transporter permease DppB TERM 5026 4282154 - 4282124 - R 74 -8.2 -3.86897 | overlap 4282128 TGTATTGCTCACAAA TCAATTCCCGCCCA GGT CGGGCAGGGAATGA AGTATTGCTGCCGGA TERM 5027 4282151 - 4282128 - R 75 -9.6 -3.6053 | gap 1, overlap 4282124 TTGCTCACAAATCAA TTCCC-GCCCA GGT CGGGCAGGGAA TGAAGTATTGCTGCC dppA 4283822 - 4282215 - | dipeptide transport protein TERM 5028 4282966 - 4282982 + g 81 -9.5 -4.02424 | TTCAGCCCCGGCATT TCCATCA GAT TGATGGA TTTATCCTGCTTCAT TERM 5029 4284555 - 4284537 - R 100 -14.6 -5.1287 | opp_overlap 4284537 TGCAGATGCAAAAAA GCCTGCTC GTT GAGCAGGC TTTTCGAATTTGGTC TERM 5030 4284537 - 4284555 + r 100 -14.6 -4.25074 | opp_overlap 4284537 TGCAGATGCAAAAAA GCCTGCTC GTT GAGCAGGC TTTTCGAATTTGGTC SDY_4570 4286790 - 4285579 - | hypothetical protein SDY_4571 4287707 - 4286802 - | insertion element IS2 transposase InsD SDY_4572 4288030 - 4287665 - | insertion sequence 2 OrfA protein SDY_4573 4288094 - 4288309 + | IS600 ORF1 SDY_4574 4288450 - 4289163 + | IS600 ORF2 SDY_4576 4292471 - 4292076 - | iso-IS1 ORF2 SDY_4577 4292666 - 4292923 + | hypothetical protein TERM 5031 4293975 - 4293965 - g 100 -3.2 -5.61689 | AAAAGGAAGAAAAAA TCGC GCA GCAA ATGAGTCTGAAAAAT SDY_4580 4293697 - 4294050 + | hypothetical protein SDY_4581 4294119 - 4294394 + | IS1 ORF1 SDY_4583 4294963 - 4294751 - | hypothetical protein SDY_4582 4294439 - 4294816 + | IS1 ORF2 SDY_4584 4294974 - 4295339 + | insertion sequence 2 OrfA protein SDY_4585 4295297 - 4296202 + | insertion element IS2 transposase InsD SDY_4586 4296302 - 4297066 + | IS600 ORF2 TERM 5032 4298606 - 4298628 + F 100 -19.2 -4.98531 | GTCACTCTCCTTCAG GCCCCGGTCA TCA TGACCGGGGC TTTTTACTTTCAGGG TERM 5033 4298891 - 4298916 + F 100 -13.3 -5.09521 | CATTTCATCTGTCAG GCCGCGTCTTC TCCG GGAGACGTGGC TTTTTCATTTATTAC TERM 5034 4298970 - 4298983 + F 75 -6.7 -4.48987 | AAGGAGCAAATTATG CGACT AGCC AGTCG TTTTGGTTATGCGAA SDY_4588 4299473 - 4299787 + | hypothetical protein TERM 5035 4299831 - 4299860 + F 100 -16.5 -3.34455 | gap 1, opp_overlap 4299829 4299826, overlap 4299826 GGCACCAGAATCACC CGACGCCCCGG-AG GCG CTGCCGGGGTGTCG TTCCATTTCTGATGA TERM 5036 4299940 - 4299923 - f 74 -8.5 -3.85817 | ACCGTCCCGGAGAAA TCAGTCT GTGC AGACTGA GTATACAGGCAATGG SDY_4589 4300128 - 4300601 + | hypothetical protein SDY_4590 4300617 - 4301093 + | putative DNA repair protein SDY_4591 4301162 - 4301383 + | hypothetical protein TERM 5037 4301740 - 4301699 - f 74 -11 -2.78384 | gap 2, opp_overlap 4301699, overlap 4301713 CGTGCCGGTATCAGA GGCC-GGTTCAGAG-ATACG GATG CGTACCCTCTGGACCAGGCC TTTCCGCTGCTGATG TERM 5038 4301699 - 4301740 + F 82 -11 -3.62572 | gap 2, opp_overlap 4301699 4301713 CGTGCCGGTATCAGA GGCC-GGTTCAGA-GATACG GATG CGTACCCTCTGGACCAGGCC TTTCCGCTGCTGATG SDY_4592 4302375 - 4302866 + | hypothetical protein TERM 5039 4303110 - 4303132 + F 84 -8.4 -4.61873 | overlap 4303118 ATTTCACTTCCCTGA CGTCAGCC TGAACAC GGCTGGCG TTTTCATTTATAAAC SDY_4593 4304289 - 4304471 + | iso-IS1 ORF2 SDY_4594 4304468 - 4304683 + | iso-IS1 ORF2 SDY_4595 4305062 - 4304805 - | hypothetical protein TERM 5040 4304996 - 4305013 + g 74 -7.7 -4.03234 | AAGTCATGCCCGCTG CCTGCAA CGCC TTGCGGG TTTGTATGACGCCGA yjiL 4305832 - 4305059 - | putative enzyme TERM 5041 4305764 - 4305747 - G 84 -10.5 -3.84246 | GTTGGAACGAGGAAA CGGCGCG TAAT CACGCCG TCTGCCAGTAAGATC TERM 5042 4306453 - 4306467 + r 74 -5.6 -4.57073 | overlap 4306454 TAAAAATTAGCCAGT GCGCGA CGT TCGCGG TTTTTCAGCGCAATG TERM 5043 4306454 - 4306466 + r 70 -9.1 -3.33922 | overlap 4306453 AAAAATTAGCCAGTG CGCGA CGT TCGCG GTTTTTCAGCGCAAT TERM 5044 4306637 - 4306648 + r 75 -3 -5.27023 | GCTTAAACTCCGCCA TGTA TTCA TACA TTTTCTTTTTGCCGT TERM 5045 4308358 - 4308341 - R 79 -11.3 -3.32233 | opp_overlap 4308339, overlap 4308339 4308337 TAAGCAGTAAAGAGA GCGCCAA CATT TTGGCGC GTCTGAGTTCAATGA yjiO 4309656 - 4308424 - | putative transport protein TERM 5046 4309795 - 4309774 - H 75 -10.9 -2.97166 | overlap 4309769 ATGTAATCAACCACA CTGCCTGTG AATA CACAGACAG AGAAATACCTTCTGA TERM 5047 4309827 - 4309801 - H 79 -8.1 -4.20086 | opp_overlap 4309805 ACACAGACAGAGAAA TACCTTCTGAC TCCAG GTCAGAATGTA TAACGATTACAAATA SDY_4600 4310123 - 4311067 + | hypothetical protein TERM 5048 4311268 - 4311256 - T 71 -3.3 -4.78848 | overlap 4311260 CCTGCAAAGATAAAA CGAGT CAC ACGCG ATTCGTGAGAGGAAA yjiR 4312722 - 4311310 - | putative regulator yjiS 4312899 - 4313063 + | hypothetical protein SDY_4603 4313160 - 4313390 + | hypothetical protein SDY_4604 4313760 - 4313365 - | iso-IS1 ORF2 yjiA 4314976 - 4314122 - | putative GTP-binding protein YjiA TERM 5049 4314766 - 4314749 - G 78 -5.5 -4.85599 | overlap 4314761 CTCATGGGAGAAAAA GGTCTGA ATAA TCGGACC GGGATCGGCCATGCC yjiX 4315292 - 4315089 - | hypothetical protein TERM 5050 4315332 - 4315316 - R 93 -13.7 -3.60234 | opp_overlap 4315311 CCAGATATGCGTAAA GCCCGGA AGG TCCGGGC TGGGGATTTGCTGGA TERM 5051 4315403 - 4315359 - R 86 -11.6 -3.53811 | gap 2, opp_overlap 4315351 4315387, overlap 4315360 TGGATGCGGCGTAAA CGCCTTATCCGGCCTACGATAG ACA CT-TTGTAGGCCGGATACG-CG CAGCGCATCCGGCAA TERM 5052 4315404 - 4315360 - R 76 -11.6 -2.72144 | opp_overlap 4315351 4315387, overlap 4315359 GGATGCGGCGTAAAC GC-CTTATCCGGCCTACGATAG ACA CT-TTGTAGGCCGGATACGCGC AGCGCATCCGGCAAC yjiY 4317588 - 4315423 - | putative carbon starvation protein TERM 5053 4317778 - 4317809 + H 70 -9 -3.41454 | opp_overlap 4317784, overlap 4317780 4317784 4317808 CGTCGTTTAAGTGAC GATAAATATGTGAT TCAT ATCACATATTTATA TTGTGAATAATTTAT TERM 5054 4317780 - 4317807 + H 79 -11.6 -3.27012 | opp_overlap 4317784, overlap 4317778 4317784 TCGTTTAAGTGACGA TAAATATGTGAT TCAT ATCACATATTTA TATTGTGAATAATTT TERM 5055 4317803 - 4317784 - H 71 -8 -3.99405 | opp_overlap 4317780 4317778 4317784 TTAAGTGACGATAAA TATGTGAT TCAT ATCACATA TTTATATTGTGAATA TERM 5056 4317784 - 4317803 + H 76 -8 -4.28188 | opp_overlap 4317784, overlap 4317780 4317778 TTAAGTGACGATAAA TATGTGAT TCAT ATCACATA TTTATATTGTGAATA TERM 5057 4317975 - 4317989 + H 74 -7.1 -4.20883 | GTATCAAGATCGTGA CCAGC TTACT GCTGG TTTTGGCCGTTTTTG TERM 5058 4318299 - 4318260 - H 80 -5.6 -5.04987 | gap 1, opp_overlap 4318294, overlap 4318276 4318277 AACAGGCGGAAAAAA CTG-GGCGGATTACGAAGC GTT GCCGCGTGACCCGCGTCAG AGCACCGCCGCAGCG TERM 5059 4319644 - 4319617 - H 95 -12.2 -4.2679 | gap 1, overlap 4319597 TAATCGCCATGAAAA TGCCCGATAAGCA AAA TG-TTATCGGGCA TAAGGAGATTAATCT SDY_4609 4320060 - 4320362 + | IS600 ORF1 SDY_4610 4320503 - 4321216 + | IS600 ORF2 mdoB 4324546 - 4322255 - | phosphoglycerol transferase I TERM 5060 4323542 - 4323528 - G 72 -5.7 -4.52589 | GTGCGCGAGATAAAA CCATC CGGGT GATGG GTATCGACCGTCAGG yjjA 4325297 - 4324800 - | hypothetical protein dnaC 4326080 - 4325343 - | DNA replication protein DnaC TERM 5061 4325958 - 4325972 + g 93 -11.4 -4.15703 | ACGTTCGAGAGCGGC GGAGCG GAT CGCTCC TTGTTCTTTCTGCCA dnaT 4326622 - 4326083 - | primosomal protein I TERM 5062 4326712 - 4326677 - R 83 -13.4 -3.26947 | opp_overlap 4326679 4326681 4326711 TAACTTTTATAGTAA CACACGGAGGAGAG GAGGCTGT CTCTCATCCGTGTG CTTAAGCGAGGCAAT TERM 5063 4326679 - 4326710 + r 73 -10.9 -2.70932 | opp_overlap 4326677, overlap 4326681 ACTTTTATAGTAACA CACGGAGGAGAGG AGGCTG TCTCTCATCCGTG TGCTTAAGCGAGGCA yjjB 4327055 - 4326729 - | hypothetical protein TERM 5064 4327923 - 4327913 - H 72 -5.4 -4.43397 | TTGCAAAAGAAATAA TCCA CAC TGGA TACAAAGCCGTGTTA TERM 5065 4327942 - 4327930 - H 79 -9.1 -4.05747 | opp_overlap 4327927 CACACTGGATACAAA GCCGT GTT ACGGC TCGCTGTTGCTGGTG SDY_4618 4328009 - 4328284 + | IS1 ORF1 SDY_4619 4328329 - 4328706 + | IS1 ORF2 SDY_4621 4329463 - 4329068 - | iso-IS1 ORF2 SDY_4623 4330737 - 4331132 + | iso-IS1 ORF2 TERM 5066 4331493 - 4331475 - T 81 -3.9 -5.41143 | gap 1 CAGCGCCCAAAAAAA CAGTGCGA TGCG TCG-ACTG GCAATTCACAGCAAC fhuF 4333092 - 4332304 - | ferric iron reductase involved in ferric hydroximate transport TERM 5067 4332622 - 4332642 + g 73 -11.9 -2.80922 | overlap 4332620 4332618 4332624 GCTGATTAACGTTTC CATTCGCTG CTG CGGCGAATG TGGTGTTGCGTTTTT SDY_4626 4333122 - 4333469 + | hypothetical protein rsmC 4335062 - 4334031 - | 16S ribosomal RNA m2G1207 methyltransferase TERM 5068 4334454 - 4334438 - G 74 -7.9 -4.02653 | AAGCAACGGAAAGAA CGCCTGC GCC GCAGCCG ACATCCAGCACTTTA TERM 5069 4335407 - 4335391 - gH 79 -2.2 -5.26316 | overlap 4335392 TGACGCCAGAAAAAA TCGCGA TGCTG CCGCAA GGCAGTCGCTGCAAC holD 4335165 - 4335578 + | DNA polymerase III subunit psi rimI 4335547 - 4335993 + | ribosomal-protein-alanine N-acetyltransferase TERM 5070 4336293 - 4336308 + G 70 -6.8 -4.1347 | gap 1 GCGGAAATCTGTACG CCGCTGC CGG GC-GCGG TTTCTCTGCTTAACG yjjG 4336008 - 4336685 + | nucleotidase TERM 5071 4336794 - 4336827 + G 77 -8.9 -4.06419 | gap 1, opp_overlap 4336802, overlap 4336802 ACGTTGTCTCCTTAT TTGCAAGAG-GTGGCG AAG CGCCGCACTTTTGCCA TTATTTCTCACCCGG TERM 5072 4337704 - 4337683 - g 70 -5.9 -4.18018 | gap 1 GCTTCGTATTTAAAA TTCAGG-CCA ACA TGGACCCGAA ACACCGCGACCGCGT prfC 4336776 - 4338365 + | peptide chain release factor 3 TERM 5073 4338376 - 4338401 + F 86 -14.7 -2.68338 | overlap 4338374 4338373 ATTAATTCTAGCCTC CAGGGCGCGGT AGCC GCTGCGCCCTG TCAATTTCCCTTCCT SDY_4635 4338783 - 4339178 + | iso-IS1 ORF2 osmY 4339532 - 4340137 + | periplasmic protein TERM 5074 4340457 - 4340475 + F 100 -14.6 -4.28049 | opp_overlap 4340457 AAAATTTTATCCAAA GCCAGTCC AGC GGACTGGC TTTTGCGGTTTTAGC TERM 5075 4340475 - 4340457 - f 100 -14.6 -3.67989 | opp_overlap 4340457 AAAATTTTATCCAAA GCCAGTCC AGC GGACTGGC TTTTGCGGTTTTAGC yjjU 4340547 - 4341620 + | hypothetical protein yjjV 4341617 - 4342399 + | putative deoxyribonuclease YjjV TERM 5076 4342444 - 4342463 + T 73 -10 -3.4252 | opp_overlap 4342440 4342439, overlap 4342429 CGGCGCATAATGCCT GATGCGAC GCTT GTCGCGTC TTATCATGCCTACAG TERM 5077 4342561 - 4342506 - T 73 -9.7 -3.30124 | gap 1, opp_overlap 4342506 4342507 4342550, overlap 4342507 4342540 4342541 CCGTAGGCCGGATAA GGCGTTCACGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACGCTGACGCG TCTTATCATGCCTAC TERM 5078 4342560 - 4342507 - T 80 -13.2 -2.57931 | gap 1, opp_overlap 4342506 4342507 4342550, overlap 4342506 4342540 4342541 CGTAGGCCGGATAAG GCGTTCACGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACGCTGACGC GTCTTATCATGCCTA TERM 5079 4342507 - 4342560 + T 73 -11 -2.56747 | gap 1, opp_overlap 4342507 4342506 4342540 4342541, overlap 4342506 4342550 CGTAGGCCGGATAAG GCGTTCACGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACGCTGACGC GTCTTATCATGCCTA yjjW 4343475 - 4342612 - | putative activating enzyme TERM 5080 4343422 - 4343398 - GT 78 -6.4 -4.57569 | gap 1, overlap 4343400 GCAGCCCTGCAAAAA CAGAGCCAGAC GACT GCCTGGCCC-G TCAACGCAGGAGAAG TERM 5081 4343421 - 4343400 - GT 81 -10.1 -3.90316 | overlap 4343398 AGCCCTGCAAAAACA GAGCCAGAC GACT GCCTGGCCC GTCAACGCAGGAGAA yjjI 4344997 - 4343447 - | hypothetical protein TERM 5082 4345864 - 4345844 - g 100 -9.7 -5.24129 | TGGGCGTAGAAAAAA CCGTTGGTT TCA AACCAGCGG GCGGCGTGCGTACTG deoC 4345255 - 4346034 + | deoxyribose-phosphate aldolase deoA 4346161 - 4347483 + | thymidine phosphorylase deoB 4347535 - 4348758 + | phosphopentomutase deoD 4348838 - 4349557 + | purine nucleoside phosphorylase TERM 5083 4349591 - 4349614 + F 93 -8.8 -4.82154 | CGATTGTCGTGTGAA GTCGGAGTGG GAGA CTGCTCCGGC TTTTTAGTATCCATT SDY_4645 4350059 - 4350454 + | iso-IS1 ORF2 SDY_4646 4350755 - 4350492 - | hypothetical protein lplA 4351803 - 4350787 - | lipoate-protein ligase A TERM 5084 4351198 - 4351183 - G 72 -4.6 -4.60255 | opp_overlap 4351197 ATAATGGGCGAAAAA GGCCTT GGTT ATGGCC TCGCAAACCTGCTCA TERM 5085 4351406 - 4351421 + g 70 -6.8 -4.07687 | GAGCCTGAGACTTTG CGGTCG CCTT CGACTG TTTTCACCACCAGAT smp 4352475 - 4351831 - | hypothetical protein TERM 5086 4352173 - 4352187 + g 79 -10 -3.75024 | opp_overlap 4352172 4352171 GCTTTCGCCAGAACG GGCGAT AAG ATCGCC TTGTTCGTCATACAC serB 4352581 - 4353549 + | phosphoserine phosphatase TERM 5087 4353577 - 4353551 - f 76 -11.6 -2.6953 | gap 1, overlap 4353550 TGAATCATAAGTAAT TGCTCGCCCGC TATCCT GCGGGCG-GCA CAGCATTAACGAGGT TERM 5088 4354387 - 4354374 - g 78 -5.2 -4.87665 | GCGCAGCCATAAAAA CCGC TTTGGC GCGG TGAATGAGCTGGGCG sms 4353598 - 4354980 + | DNA repair protein RadA TERM 5089 4355149 - 4355125 - g 72 -5 -4.67641 | gap 1, overlap 4355126 ATGCCAAAATTAAAA GCC-CCAGC GCGCAAAA GCTGGAGGC ATTGCACCGTTTTTT TERM 5090 4355903 - 4355918 + G 70 -6.1 -4.1711 | opp_overlap 4355903 4355901 4355904 TTTTGCAGTGAAATA CGCCA ATAAAG TGGCG TTTATTGACACTGAT nadR 4355001 - 4356233 + | nicotinamide-nucleotide adenylyltransferase TERM 5091 4356356 - 4356335 - T 72 -2.9 -5.03145 | gap 1, overlap 4356323 4356337 CAAGGTTTGAAAAAA CCTGCACGGG TGA CCCGC-CACG AAATTGAGGATGCTA TERM 5092 4356422 - 4356466 + T 73 -7.8 -4.11371 | opp_overlap 4356394 4356393, overlap 4356394 ATCCGGCATTCGGTG CTCAATGCCTGATGCGACGC TTACC GCGTCTTATCAGGCCTACAG TTTTACAACGTATTG TERM 5093 4356499 - 4356530 + T 83 -10 -4.15508 | opp_overlap 4356509, overlap 4356500 ATTGCTGGTTTTGTA GGCCGGATAAGGCG TTCG CGCCGCATCCGGCA TTTTACGCATTACTT TERM 5094 4356500 - 4356529 + T 82 -13.5 -3.08581 | opp_overlap 4356509, overlap 4356499 TTGCTGGTTTTGTAG GCCGGATAAGGCG TTCG CGCCGCATCCGGC ATTTTACGCATTACT yjjK 4358207 - 4356540 - | putative ABC transporter ATP-binding protein TERM 5095 4356590 - 4356602 + g 90 -4.7 -5.36965 | overlap 4356581 GCTCCAGCGCGTCTG CGCCC AGC GTGCG TTTTTTGTACTCTTC slt 4358418 - 4360355 + | lytic murein transglycosylase TERM 5096 4360426 - 4360400 - f 85 -12.2 -3.4252 | overlap 4360401 CTTTAGCGAGTACAA CCGGGGGAGGCA TTT TGCTTCCCCCGC TAACAATGGCGACAT TERM 5097 4360425 - 4360401 - f 90 -15.7 -2.65298 | overlap 4360400 TTTAGCGAGTACAAC CGGGGGAGGCA TTT TGCTTCCCCCG CTAACAATGGCGACA TERM 5098 4360487 - 4360506 + G 72 -6.4 -4.3898 | opp_overlap 4360487 4360486 GCGATGGCAGAACAG CGTCACCA GGAG TGGTTACG TTTTGTCGACCTGCT trpR 4360445 - 4360771 + | Trp operon repressor yjjX 4361326 - 4360814 - | NTPase TERM 5099 4361160 - 4361175 + g 72 -8.2 -3.76224 | TTTGCTACCCGATTT CGTGCG CCAG CGCGCG TTTCCTCACTGCCAA gpmB 4361378 - 4362025 + | phosphoglycerate mutase rob 4362891 - 4362022 - | right origin-binding protein creA 4363102 - 4363575 + | hypothetical protein creB 4363588 - 4364277 + | DNA-binding response regulator CreB TERM 5100 4366432 - 4366446 + T 75 -2.8 -5.13521 | opp_overlap 4366432 GACCTTAACCAGCAA CTGG CCGCATC CCAG TTTTTTAGGTGATTT TERM 5101 4367150 - 4367121 - T 100 -13.7 -4.64144 | opp_overlap 4367127, overlap 4367127 AATAAGGTTGAAAAA TAAAAACGGCGCT AAAA AGCGCCGTTTTTT TTGACGGTGGTAAAG TERM 5102 4367144 - 4367127 - T 100 -12.7 -5.61881 | opp_overlap 4367127, overlap 4367121 GTTGAAAAATAAAAA CGGCGCT AAAA AGCGCCG TTTTTTTTGACGGTG TERM 5103 4367127 - 4367144 + T 100 -12.7 -5.76949 | opp_overlap 4367127 4367121 GTTGAAAAATAAAAA CGGCGCT AAAA AGCGCCG TTTTTTTTGACGGTG arcA 4367886 - 4367170 - | two-component response regulator TERM 5104 4367395 - 4367407 + g 71 -9.1 -3.44051 | opp_overlap 4367382 CATGGCGCGGAACTC GCTGC GCG GCAGC TTGTACTGCTCGCCA yjjY 4367982 - 4368122 + | hypothetical protein lasT 4368522 - 4369208 + | putative RNA methyltransferase SEQUENCE gi|82524407|ref|NC_007607.1| Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence (length 182726) SDY_P002 367 - 191 - | IS2 ORF2 TERM 1 803 - 787 - gH 74 -11.5 -2.79183 | opp_overlap 787 TGCACTGGTATCAGA CCCGGGG CTT CCCCGGA TGATCTCCACGGTAC SDY_P001 359 - 823 + | putative resolvase, fragment TERM 2 1449 - 1423 - g 72 -5.3 -4.57275 | opp_overlap 1429, overlap 1429 TAAAAAAAGCGAAAA TAAAAACAGTA AACGA TACTGATTTTA AAGAGTATAATAAGG TERM 3 1443 - 1429 - g 100 -4.3 -5.49568 | opp_overlap 1429, overlap 1423 AAGCGAAAATAAAAA CAGTA AACGA TACTG ATTTTAAAGAGTATA ospB 1233 - 1916 + | OspB TERM 4 2074 - 2103 + F 84 -10.3 -3.92143 | opp_overlap 2076 2099, overlap 2099 ATCATTCTTTTACCA CATTATTTTTCGT GAAT ATGAAAAATAATG TTATTACTTTAATAT phoN2/apy 2244 - 2984 + | PhoN2/Apy SDY_P005 4663 - 5058 + | iso-IS1 ORF2 SDY_P007 5894 - 5493 - | ISEc8 orf, fragment SDY_P008 6396 - 5974 - | IS600 ORF2 SDY_P009 6734 - 6432 - | IS600 ORF1 TERM 5 7051 - 7066 + r 72 -10.4 -2.83012 | GAGTGCCGCCTTACA TGCCGC TGGC GCGGCA TATCCTGGTAACATT ospD2 9142 - 7424 - | OspD2 TERM 6 7718 - 7736 + g 84 -3.8 -5.28778 | AAATGCCATAAAAAG TCCTGATG TAC CGTTGGGA TTTTTTATCCATAAT SDY_P011 10403 - 9498 - | insertion element IS2 transposase InsD SDY_P012 10726 - 10361 - | insertion sequence 2 OrfA protein ospF 11620 - 10901 - | OspF SDY_P014 12203 - 11826 - | putative transposase SDY_P015 13318 - 12740 - | hypothetical protein SDY_P016 13666 - 13547 - | IS3 orf2, fragment SDY_P018 14690 - 14289 - | IS91 orf TERM 7 14709 - 14762 + GH 100 -19.8 -2.74263 | opp_overlap 14704 14741, overlap 14709 GGGCAATACATGCCG TCGGCGCTGATACCGGCAGGAATT GTCGCA AATTCCTGCCGGTATCAGCGGGCA ATTTCCGGATACCCT TERM 8 14709 - 14763 + GH 100 -19.6 -3.5764 | gap 1, opp_overlap 14704 14741, overlap 14709 GGGCAATACATGCCG TCG-GCGCTGATACCGGCAGGAATT GTCGCA AATTCCTGCCGGTATCAGCGGGCAA TTTCCGGATACCCTT SDY_P017 14675 - 14962 + | hypothetical protein TERM 9 15270 - 15260 - g 82 -2.4 -5.40072 | CCGGTGGTAAAAAAA CGTC CCC GGCG GCCTAATTTTCCTTA TERM 10 15501 - 15483 - g 71 -3.1 -4.77567 | gap 1, overlap 15484 15485 AGCCGGATAATAAAA TCCCG-GC TCCG GCACAGGA ACCAGAGCAGATAAA SDY_P019 15233 - 15640 + | putative IS orf, fragment SDY_P020 15640 - 15987 + | ISSfl4 ORF2 TERM 11 16048 - 16033 - f 77 -10.4 -3.40522 | opp_overlap 16032 ACTTGCTCATGAGAA TGCCCG CCTG CGGGCA CTGTTGCAGACGCAA SDY_P021 16115 - 17314 + | putative IS orf, fragment SDY_P022 18083 - 18289 + | putative transposase, fragment ospD1 18877 - 19554 + | OspD1 SDY_P024 20260 - 20036 - | hypothetical protein TERM 12 20433 - 20464 + H 76 -8.2 -4.14472 | gap 1, opp_overlap 20432 20436 20438 20439, overlap 20437 20438 20459 CTTCATAACTACAAC TAACAGGGCATCATT ATG AATGATGCCG-GTTA TTTTACCGCTGTTGG TERM 13 20460 - 20438 - H 70 -9.2 -3.31854 | opp_overlap 20437 20433 20438 20459, overlap 20436 20432 20439 TAACTACAACTAACA GGGCATCATT ATG AATGATGCCG GTTATTTTACCGCTG TERM 14 20459 - 20439 - H 78 -12.7 -2.58389 | opp_overlap 20438 20437 20433, overlap 20438 20436 20432 AACTACAACTAACAG GGCATCATT ATG AATGATGCC GGTTATTTTACCGCT ipgB2 20653 - 21228 + | IpgB2 SDY_P026 21800 - 22099 + | IS3 ORF1 TERM 15 22376 - 22349 - g 75 -4.7 -4.74504 | ACTTTAACGTAAAAA CCGTGGCGGCA AGCCTG CGCCGTCAGGG GCTGAGGGCAAAGGG SDY_P027 22096 - 22965 + | IS3 ORF2 SDY_P028 23305 - 23577 + | iso-IS1 ORF1 TERM 16 23572 - 23610 + F 82 -11 -3.60412 | opp_overlap 23560 23578 AGCTCCCGCCCCGGC GGATAACATCTGCGTCAG TCG CTCACGCTGATGTTGCCC TTATCTGTGAACTTG TERM 17 23730 - 23750 + F 100 -15.5 -3.46848 | overlap 23720 TCCAGGGGGTAATCT GCTCTCCTG ATT CAGGAGAGC TTATGGTCACTTTTG TERM 18 24844 - 24830 - gf 80 -11.4 -3.3506 | overlap 24821 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG SDY_P029 23820 - 24908 + | IS100 ORF1 SDY_P030 24880 - 25521 + | transposase/IS protein TERM 19 26201 - 26181 - f 72 -8.3 -3.66784 | opp_overlap 26185 GCATTTTTAATATAA GCATGTACA ATA TGTACTTGC ATGTATTACCCTGCT TERM 20 26212 - 26223 + F 100 -5.8 -5.9873 | CTTGCATGTATTACC CTGC TAAT GCAG TTTTTTTTGTAATAA TERM 21 26759 - 26797 + G 93 -14.6 -3.06815 | opp_overlap 26756 26785 GTTTCTGAACTACTT GCATGCGGTGGGGTTG GTTGATA CAACCGCACCGCAGGC TATGTTGCAGAACGT TERM 22 26970 - 26955 - g 81 -6.1 -4.80453 | TTAGGACAAAACAAA CACGC GATATT GCGTG AGAATATTATTGATA parA 26268 - 27467 + | plasmid segregation protein parB 27467 - 28447 + | plasmid segregation protein SDY_P033 28703 - 29188 + | putative transposase, fragment SDY_P034 30604 - 29477 - | putative reverse transcriptase TERM 23 29870 - 29895 + g 70 -6.9 -4.13014 | gap 1, opp_overlap 29870 GTCATATCCGAGAAA GGTGAAAC-TCG TTG CGACGTTTCTCC TTTTAAACGTGTCAA TERM 24 30819 - 30847 + r 70 -8.9 -3.36968 | ACGAATGGGTCCGCC CCTGTTTCCCG ATACGTG CCGGAAACAGG TTCTCACGTTCCCTG SDY_P035 32007 - 31384 - | IS629 ORF2 TERM 25 31963 - 31975 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SDY_P036 32204 - 32524 + | hypothetical protein ipaH4.5 34381 - 32657 - | invasion plasmid antigen TERM 26 34693 - 34731 + r 77 -8.9 -3.96068 | gap 1, opp_overlap 34701, overlap 34694 AAAAGTCAGTTGCAC GCCGTAAATCCCCGC-CG GTAT TGAGCGAGGATTTACGGG TTGTTGTTAAGGTCC TERM 27 34694 - 34730 + r 80 -12.4 -2.97158 | gap 1, opp_overlap 34701, overlap 34693 AAAGTCAGTTGCACG CCGTAAATCCCCGC-CG GTAT TGAGCGAGGATTTACGG GTTGTTGTTAAGGTC ipaH7.8 36506 - 34809 - | invasion plasmid antigen TERM 28 35863 - 35851 - G 70 -4.1 -4.62471 | opp_overlap 35851 TCTAATTGTGAAAAA CTCTC CGG AAGAG TGGTTATCTGATTAA TERM 29 36378 - 36396 + g 76 -7.4 -4.21933 | overlap 36386 AAAAGCAATGCCTCG CTCTTCCC CGG GAGAAGAG TTCTTTTCCCATTCA TERM 30 36610 - 36636 + r 78 -6.1 -4.68209 | gap 1, opp_overlap 36617, overlap 36615 TTAATAGTTTCCATT TTAC-ACATAAC AGAA GTTATGTTGTAA TTTATTTATTGAGGT SDY_P039 37700 - 37326 - | IS600 ORF2 SDY_P040 38133 - 37678 - | IS600 ORF2 insB 38613 - 38236 - | IS1 ORF2 TERM 31 39679 - 39660 - g 78 -8.6 -4.25104 | opp_overlap 39676, overlap 39676 GTTTTGGCACCAAAA TCCATCTG GCAA CAGACGGA AGTGGCCTCCCGTTA SDY_P042 39246 - 39695 + | ISSfl1 ORF1 TERM 32 40017 - 39991 - g 71 -9.4 -3.54488 | overlap 39989 GCGGCTGAAAGAATA TCGTCGCATCGC CAC GCGTTACGACAA AACGGCGAGAAATTA SDY_P043 39701 - 40090 + | ISSfl1 ORF2 TERM 33 40291 - 40274 - g 73 -9.1 -3.57561 | overlap 40284 40285 GCTGAACTGGCTAAA GGCCTCA AAAC CGAGGCC GACCTCAATCAGTTT SDY_P044 40229 - 40396 + | hypothetical protein ipaH1.4 42162 - 40414 - | invasion plasmid antigen TERM 34 42177 - 42147 - G 100 -17.2 -3.47494 | opp_overlap 42153, overlap 42153 ATTTAATCATTATAA CTAGAATTCTTATC AAC GATAAGAATTCTAG TGAAATAGAATATAG TERM 35 42171 - 42153 - G 73 -9 -3.57783 | opp_overlap 42153, overlap 42147 TCATTATAACTAGAA TTCTTATC AAC GATAAGAA TTCTAGTGAAATAGA ospE1 42795 - 42529 - | OspE1 TERM 36 42821 - 42831 + r 75 -2.6 -5.1925 | overlap 42820 TATGTTATATTTTAG TAAA GAA TTTA TTTTTTACATTATAG SDY_P047 43135 - 42851 - | IS1 ORF, fragment SDY_P048 43633 - 43935 + | IS600 ORF1 SDY_P049 44479 - 44084 - | iso-IS1 ORF2 SDY_P050 44778 - 44506 - | iso-IS1 ORF1 SDY_P051 45620 - 44973 - | IS629 ORF2 TERM 37 45540 - 45552 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SDY_P052 45781 - 46101 + | hypothetical protein SDY_P053 46537 - 46208 - | putative transposase SDY_P054 46786 - 46613 - | hypothetical protein TERM 38 48276 - 48266 - g 70 -4 -4.68384 | AGTCATTCAATAAAA TTCA GTC TGAA GGAATATGCACAAAC ospC1 47797 - 49209 + | OspC1 ospD3 49566 - 51215 + | OspD3 SDY_P057 51907 - 51512 - | iso-IS1 ORF2 SDY_P058 52206 - 51934 - | iso-IS1 ORF1 TERM 39 52544 - 52517 - g 78 -8.5 -4.15044 | CGCCTGCTCAAGAAA TCAGTGTTGAG GCTGCT CTCAACGCTGA ACTGACTCACCATCT SDY_P059 52421 - 52549 + | putative transposase, fragment SDY_P060 52645 - 53223 + | putative transposase SDY_P061 53208 - 53498 + | hypothetical protein SDY_P063 54053 - 53802 - | hypothetical protein TERM 40 54367 - 54355 - gH 72 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SDY_P062 54044 - 54934 + | IS629 ORF2 TERM 41 55310 - 55295 - g 100 -2.6 -6.07627 | ACCGTTAAAAAAAAA CATTAC GCTA ATAATG TTCACCCTGTCATTA TERM 42 56647 - 56637 - g 74 -8.2 -3.88498 | GTGGCACAGATGAAA CCGG ATT CCGG AGCCTACCCACAATT ushA 55224 - 56927 + | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor SDY_P065 56996 - 57268 + | iso-IS1 ORF1 SDY_P066 57295 - 57690 + | iso-IS1 ORF2 TERM 43 58583 - 58567 - g 72 -5.1 -4.44211 | overlap 58569 TGTAATACAAAAGAA CAGGATA CAT TATCCAG AAATGGCTCTTATCC TERM 44 58835 - 58819 - g 76 -3.7 -5.01535 | GCACAATTACAAAAA GCGAA AGATGAA TTCGC TAACAATCAGAAAAA phoN1 58105 - 58854 + | PhoN1 TERM 45 58898 - 58927 + T 89 -9.3 -4.59109 | overlap 58900 CGACCTTCAGGGCTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCAGGGCTGTG TERM 46 58900 - 58925 + T 100 -16.3 -3.90762 | overlap 58898 ACCTTCAGGGCTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCAGGGCTG SDY_P068 59413 - 59024 - | ISSfl1 ORF2 TERM 47 59435 - 59454 + r 79 -8.6 -4.25104 | opp_overlap 59423, overlap 59423 TAACGGGAGGCCACT TCCGTCTG TTGC CAGATGGA TTTTGGTGCCAAAAC SDY_P069 59643 - 59419 - | ISSfl1 ORF1 TERM 48 60919 - 60906 - g 71 -2.4 -4.93877 | opp_overlap 60906 TCCCACTAAATAAAA CACA TCATAC TGTG GATTTTGGTGCTAAT TERM 49 61655 - 61642 - g 70 -5.3 -4.32649 | opp_overlap 61642 ATTTCAAAAAGCAAA TAGTG GGGA CACTA TGCTTGACAATGCAA ospC2 60293 - 61747 + | OspC2 TERM 50 61779 - 61789 + T 85 -5.4 -5.29716 | GTTGTGCCCTGAATC TGAC GTT GTCA TTTTTGTTATATTGA SDY_P071 62286 - 61897 - | ISSfl1 ORF2 TERM 51 62308 - 62327 + r 79 -8.6 -4.25104 | opp_overlap 62296, overlap 62296 TAACGGGAGGCCACT TCCGTCTG TTGC CAGATGGA TTTTGGTGCCAAAAC SDY_P072 62741 - 62292 - | ISSfl1 ORF1 SDY_P073 63161 - 62787 - | hypothetical protein TERM 52 63190 - 63247 + r 79 -10.9 -3.33344 | gap 1, opp_overlap 63198, overlap 63171 63198 TTATTGTCACACACT GACAATAATGCATATTTGCATTA-CAAG CAA CGAGATAATGCAAATATGCATTCCTGTC TGTTGCATTTTTTAT TERM 53 63239 - 63198 - R 80 -9.8 -3.8397 | opp_overlap 63171 63190 63198 ACACACTGACAATAA TGCATATTTGCATTAC AAGCAACGAG ATAATGCAAATATGCA TTCCTGTCTGTTGCA TERM 54 63198 - 63239 + r 73 -9.7 -3.37895 | gap 1, opp_overlap 63198, overlap 63171 63190 ACACACTGACAATAA TGCATATTTGCATTA-CAAG CAA CGAGATAATGCAAATATGCA TTCCTGTCTGTTGCA TERM 55 63303 - 63349 + r 100 -10.6 -5.44119 | gap 1, opp_overlap 63310, overlap 63305 TGATTTTTTAGTATG T-ATAAAAGAAGAGCAGGT AATTGACTGA ACCTGCTCTTCTTTTATTA TTTTTTTAACATAGA TERM 56 63305 - 63346 + r 100 -14.8 -4.80853 | opp_overlap 63310, overlap 63303 ATTTTTTAGTATGTA TAAAAGAAGAGCAGGT AATTGACTGA ACCTGCTCTTCTTTTA TTATTTTTTTAACAT TERM 57 63341 - 63310 - R 93 -10.3 -4.43844 | opp_overlap 63305 63303 TTAGTATGTATAAAA GAAGAGCAGGT AATTGACTGA ACCTGCTCTTC TTTTATTATTTTTTT stbB 63742 - 63347 - | plasmid stable inheritance protein TERM 58 63559 - 63546 - G 74 -2.3 -5.08824 | opp_overlap 63525, overlap 63547 TTCTCACTGAAAAAA CCGCT GATT AGCGT TAACAGTCGGGGGTC TERM 59 63644 - 63621 - G 72 -7.4 -3.86015 | GATTGTCTGTAGAAA TCTCCCCGCA TTTG TACTGGGAGA GAGTCTATTGTTTGT stbA 64701 - 63742 - | plasmid stable inheritance protein TERM 60 63925 - 63952 + g 93 -2.1 -5.64421 | gap 1, overlap 63916 63928 TTCTGCCAGAGATTT CACTTCTC-TGT CTATT ACATGAGAAATG TTTTTTATTTCAGCT TERM 61 65192 - 65209 + G 72 -8.4 -3.85698 | opp_overlap 65183 TTAAACGACTGGCCA GCGGTG CAGTCA CACCGC TTTATCGCCGCGCCA SDY_P076 65116 - 65511 + | hypothetical protein SDY_P077 66221 - 65508 - | IS600 ORF2 insB 66665 - 66288 - | IS1 ORF2 SDY_P079 67441 - 67139 - | IS600 ORF1 SDY_P080 67853 - 67698 - | hypothetical protein SDY_P081 68294 - 68076 - | IS2 orf1, fragment SDY_P082 68987 - 68349 - | hypothetical protein TERM 62 68585 - 68601 + g 75 -6.6 -4.43221 | opp_overlap 68587 TAGAAATCATTACTA CACTTC CTTTT GAAGTG TTTTGTAAAATATTT SDY_P083 69615 - 69343 - | iso-IS1 ORF1 SDY_P084 69951 - 70184 + | IS100 ORF2 SDY_P085 70526 - 70236 - | hypothetical protein TERM 63 70298 - 70311 + g 73 -3.9 -4.82901 | CGGTTTCAGCATCCA TTATG CCGT CATAA TTTTTCTGCCGGAAA SDY_P086 70745 - 70533 - | hypothetical protein SDY_P087 71197 - 71481 + | hypothetical protein SDY_P088 71481 - 71756 + | hypothetical protein TERM 64 71910 - 71888 - g 70 -4 -4.68479 | ATAAAATAACGAAAA TTACCGCTCG TGA CTGGCGGCAA TATCGCGCTCCGGGC SDY_P089 71809 - 71982 + | hypothetical protein TERM 65 72125 - 72071 - T 79 -7.5 -4.43307 | gap 1, opp_overlap 72073 72117, overlap 72068 72072 72080 72116 72117 TTGGCAAGAAAATAA CTTGATTAAGTTTCCTTTATCCAGCC TGAT AG-TGGATAAAGGAAACTCAATAATA ATTGAATTGGTTTAT TERM 66 72123 - 72072 - T 74 -10.7 -3.25261 | gap 2, opp_overlap 72073 72117, overlap 72071 72068 72080 72116 72117 TGGCAAGAAAATAAC TTGATTAAGTTTCCTTTATCCAGCC TGAT AG-TGGATAAAGGAAACTCAAT-AA TAATTGAATTGGTTT TERM 67 72116 - 72080 - T 81 -12.6 -3.20769 | gap 1, opp_overlap 72073, overlap 72072 72071 72068 AAATAACTTGATTAA GTTTCCTTTATCCAGCC TGAT AG-TGGATAAAGGAAAC TCAATAATAATTGAA SDY_P090 72482 - 72117 - | plasmid stable inheritance protein SDY_P092 73011 - 72514 - | putative plasmid stable inheritance protein TERM 68 72744 - 72756 + gH 82 -2.7 -5.28778 | TAATTCGTTGCTTCA GATAG TTG TTATC TTTTTTGTGAATAAT SDY_P091 73010 - 73771 + | putative IS orf, fragment SDY_P093 73771 - 74151 + | putative IS orf, fragment SDY_P094 74742 - 74527 - | iso-IS1 ORF2 SDY_P095 75220 - 74948 - | iso-IS1 ORF1 ccdA 75460 - 75678 + | plasmid maintenance protein CcdA TERM 69 75934 - 75917 - g 85 -11.3 -3.62597 | GTTATCGGGGAAGAA GTGGCTG ATCT CAGCCAC CGCGAAAATGACATC ccdB 75680 - 75985 + | plasmid maintenance protein CcdB TERM 70 76334 - 76352 + F 72 -5.2 -4.63184 | opp_overlap 76317, overlap 76335 CATGACAGATTTCGC TGCCGTGA CTG TCACCGCG TTTTTCAGCTCACTT SDY_P098 76543 - 76938 + | iso-IS1 ORF2 TERM 71 77280 - 77260 - g 72 -5.3 -4.45259 | overlap 77261 AAATGGGAAAAACAA GCGCTCCCC GGT GAAGAGCGT GATGAGGCTGTCTCC ipaH9.8 77122 - 78789 + | invasion plasmid antigen TERM 72 78916 - 78931 + F 72 -10.4 -2.82635 | GAGTGCCGCCTTACA TGCCGC TGGC GCGGCA TATCCTGGTGACGAT yacA 78997 - 79266 + | hypothetical protein TERM 73 79452 - 79466 + F 70 -5 -4.53303 | CTGGACCACACAAGG TAGCGT GTA ACGTTA TTTTGTGTGAAAATC TERM 74 80045 - 80031 - g 82 -2.9 -5.26875 | GCTGCAACCAAAAAA GATAA AGAGA TTATC GACCGACGATTACAA ospG 79518 - 80108 + | OspG TERM 75 80724 - 80714 - g 82 -2.4 -5.40072 | opp_overlap 80722 CCGGTGGTAAAAAAA CGTC CCC GGCG GCCTAATGCCGATCA SDY_P102 80513 - 80755 + | putative IS orf TERM 76 80776 - 80807 + F 100 -13.9 -4.4017 | opp_overlap 80779 CCAGTGGCTGTGTAA GAATCCGGAAACG CTCACT TGTTTCCGGATTC TTTTATGCACATTGG TERM 77 80804 - 80779 - f 72 -9.1 -3.61398 | opp_overlap 80776 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTCTTTTATGCACAT SDY_P103 80794 - 82140 + | IS4 orf TERM 78 82151 - 82122 - T 89 -9.3 -4.59109 | overlap 82124 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TAAGGCCGCCGGGGA TERM 79 82149 - 82124 - T 100 -16.3 -3.90762 | overlap 82122 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTAAGGCCGCCGGG TERM 80 82158 - 82168 + T 76 -2.4 -5.40072 | GACTGGCATTAAGGC CGCC GGG GACG TTTTTTTACCACCGG SDY_P104 82393 - 82151 - | putative IS orf TERM 81 82516 - 82489 - H 76 -4.7 -4.74504 | overlap 82490 82491 ACTTTAACGTAAAAA CCGTGGCGGCA AGCCTG CGCCGTCAGGG GCTGAGGGCAAAGGC SDY_P105 82491 - 82709 + | IS3 ORF2 SDY_P106 85546 - 82697 - | hypothetical protein TERM 82 84487 - 84476 - G 71 -2.2 -4.91511 | ACTCCATGAGAAAAA GCTC GGAT GAAC TATCTGATTGGCATC shf 86143 - 86934 + | putative carbohydrate transport protein rfbU 87084 - 88025 + | UDP-sugar hydrolase TERM 83 88064 - 88075 + G 72 -4.4 -4.67552 | TATCATTTATCGGTT TCCT TAAA AGGA TTGTTTTTTCCTCAG TERM 84 88879 - 88898 + G 70 -6.4 -4.28069 | AGTAAAAAACGCTCT GAGTATCG AAAA CGATACGC TTTGTTGGATTATAT virK 88030 - 88980 + | VirK TERM 85 89242 - 89222 - g 72 -5.3 -4.48072 | opp_overlap 89224 89238, overlap 89223 89224 AGATTGAGCAGAAAA GCTCGTCGC AGG GCGACGATT AATTTATCGCTTTGT TERM 86 89224 - 89240 + G 88 -12.3 -3.63662 | opp_overlap 89224 89223 89222, overlap 89238 ATTGAGCAGAAAAGC TCGTCGC AGG GCGACGA TTAATTTATCGCTTT TERM 87 89240 - 89224 - g 76 -12.3 -2.5639 | opp_overlap 89224 89238, overlap 89223 89222 ATTGAGCAGAAAAGC TCGTCGC AGG GCGACGA TTAATTTATCGCTTT msbB2 89045 - 89989 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 88 90495 - 90483 - g 79 -4.7 -5.00616 | CCCCGGGGGAAAAAA GCGTC CCC GGCGC CCCAACTTCCCTTAT SDY_P111 90163 - 90831 + | putative transposase TERM 89 90911 - 90944 + T 74 -10.4 -3.14211 | gap 2 TCTCTTGTGCAGCAT GGC-TGCA-CAGGGAC TCAC GTCCCTGGTGCGCGCC TTCGTGGCACACCAT SDY_P112 91281 - 90973 - | hypothetical protein TERM 90 91059 - 91073 + g 86 -12.8 -3.49618 | opp_overlap 91047 91059 GCAGGGGCGAGATCA CGCCGC CCT GCGGCG TTCCTTCTGTCACCG TERM 91 91073 - 91059 - G 76 -12.8 -2.62616 | opp_overlap 91059, overlap 91047 GCAGGGGCGAGATCA CGCCGC CCT GCGGCG TTCCTTCTGTCACCG SDY_P113 91545 - 91342 - | hypothetical protein TERM 92 91623 - 91596 - H 79 -11.2 -3.38072 | TCGATGGAACAGCAA TCAGCGCGCCCG GGGG CGGCAGCGCTGA ATGGCGACTACATAT TERM 93 92298 - 92313 + G 81 -9 -4.07885 | opp_overlap 92298 TAATTGACGACATAA TCCAGC CATC GCTGGA TTTTCCCCCCAGATG TERM 94 92313 - 92298 - g 71 -9 -3.56161 | opp_overlap 92298 TAATTGACGACATAA TCCAGC CATC GCTGGA TTTTCCCCCCAGATG SDY_P114 91637 - 92329 + | IS186 ORF1 SDY_P115 93083 - 92370 - | IS600 ORF2 TERM 95 93225 - 93267 + r 91 -2.1 -5.92337 | gap 1, overlap 93229 TCGCCATTGTTCGAT TAAC-GCGTATTTTTCAGCG ACTC CTGTGCAAAATACGCTGTTG TTTTTTTTGATATAT SDY_P116 93526 - 93224 - | IS600 ORF1 traD 93565 - 95079 + | hypothetical protein SDY_P118 94961 - 95374 + | hypothetical protein TERM 96 95493 - 95523 + GT 82 -11 -3.55842 | opp_overlap 95494, overlap 95494 CGATCATTTGATCAA ATGGCCCGACAGGG CGT CCCTGACGGGCAAG TTCTGCTCTTATCTG TERM 97 95494 - 95522 + GT 90 -14.5 -2.72782 | opp_overlap 95494, overlap 95493 GATCATTTGATCAAA TGGCCCGACAGGG CGT CCCTGACGGGCAA GTTCTGCTCTTATCT TERM 98 95522 - 95494 - gT 100 -14.5 -3.75169 | opp_overlap 95494 95493 GATCATTTGATCAAA TGGCCCGACAGGG CGT CCCTGACGGGCAA GTTCTGCTCTTATCT mvpT 96008 - 95781 - | plasmid maintenance protein trbH 95374 - 96093 + | TrbH SDY_P121 96090 - 96509 + | oriT nicking and unwinding protein, fragment TERM 99 97143 - 97124 - gf 72 -10 -3.28791 | gap 1 ACGTGCTGGCCAGAA CGGTCGGCA TAC TGCCG-CCG GAAAATGGTGTGATT TERM 100 97645 - 97633 - gf 70 -4.1 -4.60487 | overlap 97634 GACCAGGGCGAAAAA CTCTC CCT GAAAG AGACGTTAACCCTGC TERM 101 97983 - 97942 - gf 72 -8.5 -3.67188 | overlap 97940 97970 AGTGAGCTGAAAACA CAGGGCGTGCTCGGACACC CGGA GGTAACCATGACCGCCCTG TCACCGGTCTGGCTG TERM 102 98220 - 98210 - gf 86 -6.8 -5.00616 | TCCGGCCGGAAAAAA TGCC GGT GGCA GACGGTGAGCGTCTG TERM 103 98423 - 98443 + GF 75 -5.4 -4.67353 | gap 1 AAACGCCCGGGCATT CCGTCAGCG ACAG TGC-GACGG TTTTTGCCTCCGTCA SDY_P122 96517 - 100710 + | oriT nicking and unwinding protein, fragment TERM 104 101295 - 101270 - gf 74 -7.6 -4.07687 | AGTTGCCCGGGAAAA TTTGCTGCAG GAGCGT CTGCAGCAGA TGGAGCGGGATATGG SDY_P123 100659 - 101351 + | putative DNA helicase I, fragment TERM 105 101346 - 101335 - f 71 -3.6 -4.84918 | TGCAGAAAGAGAAAA CCCC GGGC GGAG ACTGATACAGGAAGA TERM 106 101805 - 101819 + G 76 -9.2 -3.85698 | opp_overlap 101788 GGCCATACTCCTGAT GGCCCT GTG GGGGCC TTTGTCCGGCACCAG TERM 107 102044 - 102060 + G 72 -5.1 -4.58283 | GAAAATCATTACCCC GTTTCTG GCC CGGAGAC TTTTTCCCGACGTTC traX 101371 - 102117 + | conjugal transfer pilus acetylation protein TraX TERM 108 102317 - 102298 - g 70 -6.3 -4.2687 | GTGAAAAAGCAGAAA CTGGCCG AGAAAG CGGCCCG TGAAGCAGAGCTGGC TERM 109 102361 - 102343 - g 82 -2.2 -5.40072 | opp_overlap 102346 102352 CTGGCGGCAAAAAAA GCGCAGGC CAG ACAGGCGC TGTCCATTTATCTGA TERM 110 102444 - 102480 + G 70 -10 -3.14344 | ATTATTTGACGGTGA CACGCCCCGGCTTCTG GCCTG CGGTATCCGGGACGTG TTACTGGAAGACGTG TERM 111 102543 - 102529 - g 95 -7 -5.24129 | overlap 102531 CTCTCGCATAAAAAA CTGCGC AGG GCGCTG AAGGCCATCACCCGT finO 102172 - 102732 + | conjugal transfer fertility inhibition protein FinO TERM 112 102759 - 102738 - f 100 -10.1 -6.02919 | TGAGAAATAAAAAAA GCCTCCCCC AGAG AGAGGAGGC AGGGAAATAAGGCTT TERM 113 102875 - 102864 - g 71 -3 -4.77567 | AGGGGGACAAGAAAA TGAA TGGA TTCA GAAACAGTTCACGGA yigA 102863 - 103075 + | hypothetical protein TERM 114 103117 - 103084 - Tf 91 -7.5 -5.26875 | gap 1, overlap 103085 GGTGTAACGAAAAAA GCAGCCTTCATTACTC CAG GAGTCA-GAAGGCTGA AAGGAGTTTATGAGA TERM 115 103116 - 103085 - Tf 86 -11 -3.75402 | gap 1, overlap 103084 GTGTAACGAAAAAAG CAGCCTTCATTACTC CAG GAGTCA-GAAGGCTG AAAGGAGTTTATGAG insB 103741 - 103496 - | IS1 ORF2 SDY_P127 103259 - 103561 + | hypothetical protein SDY_P129 104221 - 104009 - | putative iso-IS1 orf SDY_P130 104290 - 104520 + | hypothetical protein hmo 104623 - 104811 + | putative regulator SDY_P132 104850 - 104963 + | hypothetical protein SDY_P133 105355 - 104960 - | iso-IS1 ORF2 SDY_P134 105654 - 105382 - | iso-IS1 ORF1 TERM 116 105564 - 105546 - G 75 -5.2 -4.63184 | opp_overlap 105556, overlap 105547 AAGTGAGCTGAAAAA CGCGGTGA CAG TCACGGCA GCGAAATCTGTCATG yihA 105714 - 106214 + | hypothetical protein TERM 117 106686 - 106674 - g 72 -6.3 -4.37092 | AGTTCGTTGAGAAAA TCATC AAA GATGA ACTGCAGAGACTGGA repB 106454 - 106714 + | replication protein TERM 118 106886 - 106840 - f 100 -9 -5.1417 | gap 1 CCAGAAAAGCAAAAA CCCCGATAATCTTCTTTAACT TTGGCG AGTCAGA-AAGATTACCGGGG CCCACTTAAACCGTA TERM 119 107133 - 107115 - g 70 -5.9 -4.22346 | opp_overlap 107115 107114 107117 GAAACTGATGGAAAA GGCGGTG GGCTT CACCTCC CGTTTTGATTTCGCC repA 107005 - 107862 + | replication protein TERM 120 107898 - 107883 - f 83 -10.4 -3.79113 | ACCTCCTCAGAATAA TCCGGC ACGC GCCGGA GGCATTCGCACGCCT TERM 121 108348 - 108398 + F 85 -12.4 -3.43961 | opp_overlap 108332 108348 108354, overlap 108354 GCCCCTCCTCATAAC TGAAAAGCGCCGCCGCCCCCGCCC GAA GGGCGGGAACAGAGTCGCTTTTAA TTATGAATGTTGTAA TERM 122 108398 - 108348 - f 100 -19 -2.57132 | opp_overlap 108348 108354, overlap 108332 108354 GCCCCTCCTCATAAC TGAAAAGCGCCGCCGCCCCCGCCC GAA GGGCGGGAACAGAGTCGCTTTTAA TTATGAATGTTGTAA TERM 123 108354 - 108392 + F 95 -11.4 -4.50058 | opp_overlap 108332 108348 108354, overlap 108348 CCTCATAACTGAAAA GCGCCGCCGCCCCCGCCC GAA GGGCGGGAACAGAGTCGC TTTTAATTATGAATG TERM 124 108392 - 108354 - f 100 -18 -4.3208 | opp_overlap 108354 108348, overlap 108332 108348 CCTCATAACTGAAAA GCGCCGCCGCCCCCGCCC GAA GGGCGGGAACAGAGTCGC TTTTAATTATGAATG SDY_P138 108605 - 108700 + | hypothetical protein SDY_P139 110180 - 108972 - | IS1294 transposase TERM 125 109288 - 109300 + g 73 -9.1 -3.66095 | CTCGCGACCAGCTCA CGCTG TGT CAGCG TTTCCGTCGCCGTTT TERM 126 109384 - 109398 + g 73 -9.2 -3.65046 | TGTGCCAGCCGGGAG GCCGCT ATC GGCGGC TTCTTCAGATAACGA TERM 127 109919 - 109929 + g 79 -4.6 -5.00616 | overlap 109914 109913 GTGTCGCTATCCACA GGTC TGT GGCC TTTTTTCCGCAGGAC SDY_P141 110433 - 110161 - | hypothetical protein TERM 128 110577 - 110547 - gR 70 -9.8 -3.03214 | opp_overlap 110543 110543 AATGTATCACAGATA TGGCATGCTTTTGA ACA TGAAGAGCATGCCA ACACCTTTTCCGCGT TERM 129 111404 - 111392 - gR 72 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC ipaH 110427 - 111971 + | invasion plasmid antigen, fragment SDY_P142 112199 - 112011 - | IS600 ORF2 SDY_P143 112537 - 112235 - | IS600 ORF1 SDY_P144 113087 - 112605 - | hypothetical protein SDY_P145 113368 - 113078 - | hypothetical protein SDY_P146 114456 - 113794 - | transposase/IS protein TERM 130 114492 - 114506 + r 79 -11.4 -3.34344 | CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTAATTACCCCCTAG SDY_P147 115803 - 114511 - | IS1294 transposase TERM 131 114911 - 114923 + g 73 -9.1 -3.66095 | CTCGCGACCAGCTCA CGCTG TGT CAGCG TTTCCGTCGCCGTTT TERM 132 115007 - 115021 + g 73 -9.2 -3.65046 | TGTGCCAGCCGGGAG GCCGCT ATC GGCGGC TTCTTCAGATAACGA TERM 133 115542 - 115552 + g 79 -4.6 -5.00616 | overlap 115537 115536 GTGTCGCTATCCACA GGTC TGT GGCC TTTTTTCCGCAGGAC SDY_P148 116056 - 115784 - | hypothetical protein SDY_P149 116663 - 116076 - | ISSfl4 ORF1 TERM 134 116327 - 116315 - G 73 -9.1 -3.62046 | opp_overlap 116307 CGATCCGGGCAACAA CAGCC CCA GGCTG TAATGCCTGCTTAGC TERM 135 116667 - 116694 + r 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG SDY_P150 116973 - 116800 - | hypothetical protein TERM 136 118676 - 118663 - g 70 -5.3 -4.32649 | opp_overlap 118663 ATTTCAAAAAGTAAA TAGTG GGGA CACTA TGCTTGACAATGCAA ospC3 117314 - 118768 + | OspC3 SDY_P152 119107 - 119409 + | IS600 ORF1 SDY_P153 119550 - 120263 + | IS600 ORF2 SDY_P154 120388 - 120630 + | IS1353 transposase SDY_P155 120685 - 121038 + | IS1353 transposase TERM 137 121799 - 121781 - g 81 -7.3 -4.67011 | overlap 121783 AATGTGATGCAAAAA GGCGGGC GGGCA GCCCGTC AGGCCCGGATGTTCA TERM 138 121893 - 121843 - g 85 -3.1 -5.31877 | gap 1 AGTCAGCATAAAAAA TCCCGACAACAG-CGGCCAGGCGC TCCC GCTCACGTATGTCTGTTGCCGGGA GCAGGCAGAGGACGG TERM 139 121953 - 121940 - g 82 -9.5 -4.26903 | opp_overlap 121951, overlap 121941 CTGACGTCAGGAAAA GCGGC GAGT GCCGC CGATGCACGACGTAT SDY_P156 121228 - 122343 + | putative transposase TERM 140 122392 - 122362 - T 100 -17.1 -3.14564 | TTACCTGGTGATGAA GTCTCTTGATCAG GAGCT CTGATCAAGAGAC AGCAGCTTAGGGGGG TERM 141 122400 - 122414 + T 71 -10 -3.23274 | overlap 122398 CAAGAGACAGCAGCT TAGGGG GGG CCCCTA TTAAGTTGTCAAGCA SDY_P158 123628 - 122432 - | ISSfl2 ORF TERM 142 122485 - 122457 - G 71 -3.2 -4.82901 | TGCGGGGGATAAAAA GTCCCG-TCGCGCA TCA TG-GCGAACAGAAC GTCGCAGCGTCGTCT TERM 143 123465 - 123490 + g 71 -3.3 -4.74518 | gap 1, opp_overlap 123445, overlap 123451 123466 ATCTGACCATGTTGT TTCAGGTCAGAT ATT AGC-GACCTGAG TTTGTTTTCGTCGTT SDY_P159 124746 - 123820 - | IS100 ORF1 TERM 144 124836 - 124816 - H 100 -15.5 -3.46848 | overlap 124806 CAAAAGTGACCATAA GCTCTCCTG AAT CAGGAGAGC AGATTACCCCCTGGA ipaJ 126261 - 126944 + | IpaJ virB 128823 - 127894 - | VirB TERM 145 128340 - 128352 + g 77 -3.4 -5.14477 | GAGTGACTTTCGCGC GAGA CAGAT TCTC TTTTTTGGCTATGTC TERM 146 128761 - 128772 + g 72 -4.4 -4.68655 | TTTATTACCAGAATG GAGT GTAA ACTC TTTCTTTTGGCCTTC acp 129266 - 129030 - | Acp ipaA 131171 - 129270 - | IpaA TERM 147 129411 - 129435 + g 70 -10.1 -3.14344 | opp_overlap 129403 129402, overlap 129405 AAGTAATTCTGCCGA GGTATCGTCAA TTT TTGACAATACC TTGCTGAGGGCGCTA TERM 148 130010 - 130020 + g 70 -5.4 -4.38712 | AATTATCTGGAGTAT GGTT GAA AACC TTTTCTAAAGCTGAA TERM 149 130478 - 130491 + g 73 -3.9 -4.77896 | CTATACCAAATCCAT TACTA TCAA TAGTA TTTTTACGTTGATTG TERM 150 130533 - 130521 - G 72 -7.7 -3.8901 | GCGCAAACTATCAAA GGCAA GTT TTGCC TGTGCGTCAACTAAA ipaD 132178 - 131180 - | IpaD TERM 151 131849 - 131905 + g 77 -7 -4.46514 | gap 2, opp_overlap 131863, overlap 131863 ATGTAATAATTCTCT TGCGTCTTTATTAATTGGATATTCTTTC TTG GAAAGAATATCCAAT-AGTTGAG-CGGA TTTGTTTACATCCAT TERM 152 131863 - 131893 + g 100 -17.2 -2.7186 | opp_overlap 131863, overlap 131849 TTGCGTCTTTATTAA TTGGATATTCTTTC TTG GAAAGAATATCCAA TAGTTGAGCGGATTT TERM 153 131893 - 131863 - G 100 -17.2 -3.14132 | opp_overlap 131863 131849 TTGCGTCTTTATTAA TTGGATATTCTTTC TTG GAAAGAATATCCAA TAGTTGAGCGGATTT ipaC 133320 - 132229 - | IpaC TERM 154 133045 - 133028 - G 77 -9.9 -3.63897 | opp_overlap 133027 133025, overlap 133019 133026 GAAAGACTAGAAATA TCCAGAG TGTT CTCTGGA GTAATTGTGTGACTC TERM 155 133353 - 133376 + r 73 -11.2 -2.66255 | opp_overlap 133363, overlap 133334 133351 TATCAAGCAGTAGTT TGTTGCAAAA TTGC TTTTGCAACA TCAGTTCTATTAGCC ipaB 135082 - 133340 - | IpaB TERM 156 133883 - 133897 + g 83 -5.7 -5.0538 | opp_overlap 133883 133881 TGCCCCCAGAATAGA GCCAA TCATT TTGGC TTTTTTCGAGTCGAC TERM 157 134113 - 134103 - G 71 -3.2 -4.83615 | overlap 134068 134105 GATCCTCCAGAAAAA GCTG CTG CAAC AACACTAACGATAGT TERM 158 134409 - 134425 + g 70 -3.7 -4.67234 | opp_overlap 134409 GTGTTTGAAAATGCA GAAAAAG AGT CTATTTC TTTTTCGAGTTGCAT ipgC 135555 - 135088 - | IpgC TERM 159 135393 - 135376 - G 79 -4.1 -5.07275 | opp_overlap 135376 135377, overlap 135377 GTATATACATAAAAA TCTGAAG AAAA CTTCAGC TTCCTCTATTCTTCC ipgB1 136239 - 135613 - | IpgB1 ipgA 136644 - 136255 - | IpgA TERM 160 136524 - 136513 - G 70 -4.4 -4.57341 | opp_overlap 136513 AAGTCCGGTCAAAAA GATG TATT CATC ATTATCTGTTATACA TERM 161 136527 - 136547 + g 70 -4.8 -4.44667 | AGATGTATTCATCAT TATCTGTT ATACA AACAGGTA TTTGTTCTTCGAGCA TERM 162 136598 - 136570 - G 70 -6.1 -4.23674 | opp_overlap 136571, overlap 136571 TTCGAGCAATATAAA GGCTTGATTTTTA TCG TTAAAATCAAGCT TTGCACCTGTTATTT TERM 163 136571 - 136597 + g 73 -9.6 -3.62176 | opp_overlap 136570 136571 TCGAGCAATATAAAG GCTTGATTTTTA TCG TTAAAATCAAGC TTTGCACCTGTTATT icsB 138141 - 136657 - | IcsB TERM 164 136773 - 136790 + g 73 -3.5 -4.86216 | opp_overlap 136763, overlap 136763 AATAATCAATAGTTT TTATTGA CTTT TCGATAA TTTCTTCTTTTTTAT TERM 165 137269 - 137284 + g 76 -7.6 -4.1721 | ATTTGCCAATTGTCT GAAAGC ATCT GCTTTC TTTTGGCATATAAAT ipgD 138455 - 140071 + | IpgD ipgE 140081 - 140443 + | IpgE ipgF 140443 - 140901 + | IpgF mxiG 140910 - 142025 + | MxiG mxiH 142033 - 142284 + | MxiH TERM 166 142576 - 142556 - g 79 -4 -5.1356 | opp_overlap 142558 142574, overlap 142558 142574 CGTTAGCAAGAAAAA CAGTTTCG GCTGT CGAAACTT TATTAAAGTCTTAAT TERM 167 142574 - 142558 - g 72 -6.6 -4.19587 | opp_overlap 142558, overlap 142556 TTAGCAAGAAAAACA GTTTCG GCTGT CGAAAC TTTATTAAAGTCTTA TERM 168 142558 - 142574 + G 72 -7.3 -4.20749 | opp_overlap 142558 142556 TTAGCAAGAAAAACA GTTTCGG CTG TCGAAAC TTTATTAAAGTCTTA mxiI 142297 - 142590 + | MxiI TERM 169 142607 - 142617 + G 71 -2.6 -5.00467 | TTATATGATTAGGTA TAAA TTT TTTA TTTTATTCTTGTTGC mxiJ 142596 - 143321 + | MxiJ TERM 170 143821 - 143811 - g 71 -3.2 -4.74706 | TGCAATATGCAAAAA GGCA CTT TACC GGTATCCAGACATCA mxiK 143327 - 143845 + | MxiK mxiN 143787 - 144482 + | MxiN TERM 171 144509 - 144492 - g 70 -4.9 -4.58308 | gap 1, overlap 144501 GATTAATCAAATAAA TGCA-AGC AAT GCTCTGCA GCAAAGATTAAATAG mxiL 144475 - 144882 + | MxiL mxiM 144866 - 145294 + | MxiM mxiE 145424 - 146056 + | MxiE mxiD 146043 - 147743 + | MxiD mxiC 147822 - 148829 + | MxiC TERM 172 149705 - 149728 + G 74 -6 -4.55016 | TACATCAGCTCTTGC CTTGGCGATA GGGA TGTTGCCAGG TTTTCCGTTTTTTGT mxiA 148836 - 150902 + | MxiA spa15 150915 - 151316 + | Spa15 TERM 173 151706 - 151723 + G 74 -2.6 -5.02476 | opp_overlap 151706 GCTATATAGTGAAAG GGCTGC AATTGA GAAGCC TTTTTTAACAGGTGT TERM 174 152533 - 152509 - g 74 -6.5 -4.46212 | CCTCTCAGGATAAAA TCTACAACAAA ATA TCTGTTGTTGA GAGTTTTCTGAAGCA spa47 151320 - 152612 + | ATP synthase SpaL spa13 152756 - 153043 + | Spa13 TERM 175 153372 - 153362 - g 79 -4 -5.08015 | AAGGGAAAAAATAAA TATC GGC GATA TGAGGGGGATCTTTT TERM 176 153649 - 153639 - g 79 -4 -5.08601 | TCATTGCAAGAAAAA TCAA TAG TTGA AAATGATAAAAATGT spa32 153030 - 153908 + | Spa32 TERM 177 154064 - 154074 + G 76 -4 -5.00616 | opp_overlap 154073 TGGGTGATTCGTATT GATA CAT TATC TTTTTTGAAAAAAAA spa33 153902 - 154783 + | Spa33 spaP 154788 - 155438 + | surface presentation of antigens protein SpaP spa9 155453 - 155713 + | Spa9 spa29 155713 - 156483 + | Spa29 spa40 156490 - 157518 + | surface presentation of antigens protein SpaS spa-orf10 157540 - 157773 + | hypothetical protein TERM 178 158345 - 158328 - T 82 -11.3 -3.57561 | GCTGAACTGGCTAAA GGCCTCA AAAC TGAGGCC GACTTCAATCAGTTT SDY_P195 158970 - 158350 - | IS600 ORF2 SDY_P196 159607 - 159179 - | IS3 ORF2 TERM 179 159222 - 159249 + gr 76 -4.7 -4.74504 | AGATTCCAGCTCAGC CCCTGACGGCG CAGGCT TGCCGCCACGG TTTTTACGTTAAAGT TERM 180 159572 - 159588 + gr 83 -10.1 -4.07687 | GCCTGCTCCGCCAGT TGCCGCT TCA GGCGGCA TTTTCAGCGGCCAGT SDY_P197 159797 - 159579 - | IS3 ORF1 TERM 181 160288 - 160308 + r 73 -11.2 -2.66316 | opp_overlap 160307 TCACTTTCCGTTACT GGTGCTGT CCGTC ACAGCACC TCATGTCCTGCGGAC SDY_P198 161591 - 160815 - | hypothetical protein TERM 182 162048 - 162079 + r 100 -10.8 -5.46629 | overlap 162050 GACAATGTCATGCTC TCGCCCGTTCCGGT AATA AACGGAGCGGGCTA TTTTTTTGGAATATT TERM 183 162050 - 162077 + r 95 -13.4 -4.36089 | overlap 162048 CAATGTCATGCTCTC GCCCGTTCCGGT AATA AACGGAGCGGGC TATTTTTTTGGAATA SDY_P199 162315 - 162115 - | putative transposase SDY_P200 162452 - 162252 - | putative transposase SDY_P201 162923 - 162546 - | putative transposase SDY_P202 163461 - 163141 - | hypothetical protein TERM 184 163702 - 163690 - g 70 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SDY_P203 163622 - 164269 + | IS629 ORF2 SDY_P204 165148 - 164747 - | IS91 orf TERM 185 165167 - 165221 + r 100 -19.6 -3.5764 | gap 1, opp_overlap 165162 165199, overlap 165167 GGGCAATACATGCCG TCG-GCGCTGATACCGGCAGGAATT GTCGCA AATTCCTGCCGGTATCAGCGGGCAA TTTCCGGATACCCTT TERM 186 165167 - 165220 + r 100 -19.8 -2.74263 | opp_overlap 165162 165199, overlap 165167 GGGCAATACATGCCG TCGGCGCTGATACCGGCAGGAATT GTCGCA AATTCCTGCCGGTATCAGCGGGCA ATTTCCGGATACCCT SDY_P205 165468 - 165211 - | putative IS91 ORF2 TERM 187 166293 - 166323 + r 73 -10.6 -3.03034 | gap 1, overlap 166282 166280 166290 AGCAGTACTTCGGCC TCGCTGGATACTG TGATTC CAGTA-CCAGCGA TCCTTTCTGGCCTTT SDY_P206 166659 - 166459 - | putative reverse transcriptase, fragment SDY_P207 166816 - 166574 - | IS3 ORF2 SDY_P208 167112 - 166789 - | IS629 ORF2 SDY_P210 167351 - 166995 - | IS629 ORF2 TERM 188 167032 - 167044 + gH 72 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SDY_P209 167342 - 167593 + | hypothetical protein TERM 189 167804 - 167817 + Tr 72 -3.1 -5.07567 | overlap 167805 AATAGTTTATAGAGC TGTTC TGAA GAACG TTTTTTACAGTCTGG virA 169054 - 167852 - | VirA TERM 190 168127 - 168146 + g 73 -4.2 -4.78933 | TAATAACTCGTTGTT CAGGCATG AAAT TAAGCCTG TTTTCTATGTTTTCG TERM 191 169314 - 169297 - R 76 -4.2 -4.96848 | GGGTGTATAGAAAAA CAAAGT GGTTAA ACTTTG GGCAAGCGTACAGAA SDY_P212 169784 - 169389 - | iso-IS1 ORF2 SDY_P213 170083 - 169811 - | iso-IS1 ORF1 icsA 170357 - 173665 + | IcsA TERM 192 173675 - 173698 + T 83 -9.6 -4.03234 | opp_overlap 173675 TTCTGATAATAAAAA TGCAGGGCGT GTTG ATGTCCTGCA TTTCTCTGGGACCCA TERM 193 173698 - 173675 - T 81 -5.2 -5.18726 | opp_overlap 173675 TTCTGATAATAAAAA TGCAGGGCGT GTTG ATGTCCTGCA TTTCTCTGGGACCCA TERM 194 173710 - 173733 + T 93 -10.2 -4.57569 | TGCATTTCTCTGGGA CCCACCGTGT AAAA GCTCGGTGGG TTTTTGGGCACATGA SDY_P215 174796 - 173891 - | insertion element IS2 transposase InsD SDY_P216 175119 - 174754 - | insertion sequence 2 OrfA protein TERM 195 175264 - 175277 + G 74 -2.3 -5.0916 | ATATATGACTCTACT GTACC AGCT GGAAC TTTTTCTATTCAGGA SDY_P217 175253 - 175876 + | IS629 ORF2 SDY_P218 176003 - 176233 + | hypothetical protein repB 176278 - 176538 + | replication protein TERM 196 176720 - 176674 - f 87 -6.8 -5.1417 | gap 1 CCAGAAAAGCAAAAA CCCCGATAATCTTCTTTAACT TTGGCG AGTGAGA-AAGATTACCGGGG CCATCTAAAAACCGT TERM 197 176968 - 176950 - g 70 -5.9 -4.22346 | opp_overlap 176949 176950 176952 GAAACTGATGGAAAA GGCGGTG GGCTT CACCTCC CGTTTTGATTTCGCC repA 176840 - 177697 + | replication protein TERM 198 177733 - 177718 - T 83 -10.4 -3.79113 | ACCTCCTCAGAATAA TCCGGC ACGC GCCGGA GGCATTCGCACGCCT SDY_P221 179837 - 179127 - | hypothetical protein SDY_P222 179875 - 180027 + | IS3 ORF2 SDY_P223 180446 - 180309 - | hypothetical protein TERM 199 181229 - 181251 + H 100 -2.1 -6.20267 | ATCTATGGCCCCCGT TACTTTATT CGCAC AATGAGGTA TTTTTTTATTTTTAC icsP 181408 - 182355 + | outer membrane protease SEQUENCE gi|145294016|ref|NC_009344.1| Shigella dysenteriae Sd197 plasmid pSD197_spA, complete sequence (length 8953) repA 741 - 1697 + | hypothetical protein insA 2073 - 2348 + | hypothetical protein insB 2393 - 2770 + | hypothetical protein rfpB 4112 - 2979 - | RfpB TERM 1 3683 - 3702 + g 72 -5 -4.69027 | GTGGAAATATTATTT TATACAGG AGAA CCTGGATA TTTTTAAGTAACTTT rfpA 4920 - 4330 - | RfpA SDY_PA06 6097 - 5327 - | hypothetical protein TERM 2 5920 - 5936 + g 71 -2.3 -4.96501 | overlap 5921 GGAGAAAAATATGTG ATCTTTT TAT AAAAGAC TTTCTTTTTATAAGC TERM 3 6750 - 6761 + H 89 -4.4 -5.72622 | opp_overlap 6750 TAAATACATTAATAT CAAC TGCT GTTG TTTTTTATTTGTCGG SDY_PA07 7225 - 7497 + | hypothetical protein TERM 4 7739 - 7729 - g 79 -4.6 -5.00616 | overlap 7730 7731 GTCCTGCGGAAAAAA GGCC ACA GACC TGTGGATAGCGACAC TERM 5 8274 - 8260 - g 73 -9.2 -3.65046 | TCGTTATCTGAAGAA GCCGCC GAT AGCGGC CTCCCGGCTGGCACA TERM 6 8370 - 8358 - g 73 -9.1 -3.66095 | overlap 8346 AAACGGCGATGGAAA CGCTG ACA CAGCG TGAGCTGGTCGCGAG SDY_PA08 7478 - 8686 + | IS1294 transposase