TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.477693 %AT, 3591433 nt, 31375 terms. Intergenic: 0.538788 %AT, H2T: 687120 nt, 5510 terms; T2T: 220058 nt, 4393 terms; H2H: 265134 nt, 3787 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|110804074|ref|NC_008258.1| Shigella flexneri 5 str. 8401, complete genome (length 4574284) TERM 1 654 - 642 - g 71 -3.4 -4.86731 | TTTGCCCAAATAAAA CATG TCCTG CATG GCATTAGTTTGTTGG TERM 2 2667 - 2654 - g 73 -3.7 -4.81249 | overlap 2655 GTTCAAAGTGAAAAA TGGCG AAAA CGCCC TGGCCTTTTATAGCC thrA 336 - 2798 + | bifunctional aspartokinase I/homeserine dehydrogenase I thrB 2800 - 3732 + | homoserine kinase thrC 3733 - 5019 + | threonine synthase TERM 3 5043 - 5069 + F 81 -5 -5.24129 | CATTATCTCAATCAG GCCGGGTTTTCT TTT ATGCAGCCCGGC TTTTTTATGAAGAAA SFV_0004 5242 - 5529 + | hypothetical protein TERM 4 5557 - 5538 - T 73 -7.8 -4.13654 | overlap 5551 CCGCTAAATGACAAA TGCCGGGT AACA ATCCGGCA TTCAGCGCCTGATGC TERM 5 5563 - 5596 + T 76 -11.7 -2.62043 | opp_overlap 5551, overlap 5558 5573 CAATCCGGCATTCAG CGCCTGATGCGACGC TGGC GCGTCTTATCAGGCC TACGTTAATTCTGCA TERM 6 5638 - 5669 + T 70 -10 -3.06133 | opp_overlap 5648 CTGCATGCTTTTGTA GGCCGGATAAGGCG TTCA CGCCGCATCCGGCA TTGACTACAAACTTA yaaA 6458 - 5682 - | hypothetical protein TERM 7 6230 - 6213 - G 73 -9.1 -3.5882 | overlap 6221 6222 GACATCACCTTTAAA CGCCAGA ATCG CCTGGCG GGCATTCGCCGGCGT TERM 8 7128 - 7185 + H 93 -13.7 -3.61178 | TGCCGCTGCCGCTGC CGCTGCCGCTGCCGCTGCCGCTGCCGC TGCC GCTGCCGCTGCCGCTGCCGCTGCCGCG TTTGGCGTCGATCCC talB 8303 - 9256 + | transaldolase B TERM 9 9263 - 9292 + F 80 -12.9 -2.5294 | overlap 9262 9260 CTGCTGTAATCATTC TTAGCGTGACCGG GAAG TCGGTCACGCTAC CTCTTCTGAAGCCTG mogA 9368 - 9958 + | molybdenum cofactor biosynthesis protein TERM 10 9981 - 9964 - T 100 -12.7 -5.8187 | TAGCGAATAAAAAAA TCCCCCC GAGC GGGGGGA TCTCAAGACAATTAG yaaH 10559 - 9993 - | hypothetical protein TERM 11 10443 - 10433 - G 75 -6.8 -4.36914 | TGCCGCCGTAGAAAA TGCC CAT GGCA AGAATAATACCGTCC SFV_0010 11421 - 10708 - | hypothetical protein TERM 12 10853 - 10813 - G 87 -14 -3.07994 | gap 1 TTTAACCCCATTTAA TGCTGCGC-CCACAGGGCC TCCC AGCCCCGCGCCGCGCAGCA AACCATGCCCAAGTA TERM 13 11175 - 11209 + g 100 -18.8 -2.96274 | overlap 11169 ATTTACCGTGTCCGC GCAGTTTGTTGGCGAT ACT ATCGCCAACAAAATGC TGTAATTCTCCGGCA TERM 14 11307 - 11319 + g 80 -5.5 -4.93968 | TCAGTATGCTGGAGA GGCGA GTT TTGCC TTTTTCATTATGGGT yaaI 11851 - 11447 - | hypothetical protein TERM 15 11913 - 11939 + H 75 -3 -5.11112 | TTTACTGCTGATAAA GAGAAGATTCAG GCA CGTAATCTTTTC TTTTTATTACAATTT dnaK 12228 - 14144 + | molecular chaperone DnaK TERM 16 14208 - 14169 - f 84 -13.6 -2.91467 | gap 1, opp_overlap 14170 AAACGGGTAATTATA CTGACACGGGCGAAGGGGA ATT TCCTCTCCGCCCGTG-CAT TCATCTAGGGGCAAT TERM 17 14170 - 14207 + F 100 -17.1 -3.25823 | gap 1, opp_overlap 14169 AACGGGTAATTATAC TGACACGGGCGAAGGGGA ATT TCCTCTCCGCCCGTG-CA TTCATCTAGGGGCAA TERM 18 15308 - 15318 + G 70 -6.8 -4.03811 | overlap 15310 AGCACAACAGCCCGC GCTC AAA GAGC TTCTTTGATGGTGTG dnaJ 14233 - 15363 + | chaperone protein DnaJ TERM 19 15392 - 15375 - f 95 -12.7 -4.09739 | CTAACCTCCCCAAAA GCCTGCC CGTG GGCAGGC CTGGGTAAAAATAGG TERM 20 15439 - 15460 + F 90 -13.7 -3.39449 | opp_overlap 15438 15439, overlap 15440 CGAGCACCTGTAAAG TGGCGGGGA TCAC TCCCCGCCG TTGCTCTTACTCGGA TERM 21 15460 - 15439 - f 73 -11.5 -2.74792 | opp_overlap 15439 15440, overlap 15438 CGAGCACCTGTAAAG TGGCGGGGA TCAC TCCCCGCCG TTGCTCTTACTCGGA TERM 22 15440 - 15459 + F 90 -15 -2.63348 | opp_overlap 15439 15438, overlap 15439 GAGCACCTGTAAAGT GGCGGGGA TCAC TCCCCGCC GTTGCTCTTACTCGG TERM 23 15684 - 15716 + F 72 -4.9 -4.64844 | gap 1, opp_overlap 15652 TTCAGCATATAGGGG GCCTCGGGTTGATG GTAAAA TATC-ACTCGGGGC TTTTCTCTATCTGCC TERM 24 16238 - 16251 + G 70 -6.7 -4.06611 | overlap 16235 ATTCTTTAGCAGTGA TGCCT CGGG AGGCA TTATTCTTATCATTG nhaA 16206 - 17372 + | pH-dependent sodium/proton antiporter TERM 25 17388 - 17407 + F 93 -10.7 -4.59414 | CAGGACGGTTTACCG GGGAGCC ATAAAC GGCTCCC TTTTCATTGTTATCA nhaR 17438 - 18337 + | transcriptional activator NhaR insB 19253 - 18750 - | IS1 ORF2 SFV_0017 19328 - 19531 + | putative IS1 encoded protein TERM 26 19791 - 19806 + T 74 -6 -4.57341 | opp_overlap 19792, overlap 19792 AGCAGGCATAAAAAA ACCCGC TTGC GCGGGC TTTTTCACAAAGCTT TERM 27 19792 - 19805 + T 73 -9.5 -3.33922 | opp_overlap 19792, overlap 19791 GCAGGCATAAAAAAA CCCGC TTGC GCGGG CTTTTTCACAAAGCT TERM 28 19805 - 19792 - T 100 -9.5 -5.64274 | opp_overlap 19792 19791 GCAGGCATAAAAAAA CCCGC TTGC GCGGG CTTTTTCACAAAGCT TERM 29 19821 - 19852 + T 72 -10.3 -2.89683 | opp_overlap 19830, overlap 19825 19829 CTTTTTCACAAAGCT TCAGCAAATTGGC GATTAA GCCAGTTTGTTGA TCTGTGCAGTCAGGT rpsT 20099 - 19836 - | 30S ribosomal protein S20 TERM 30 21319 - 21307 - g 76 -9.1 -3.78329 | CTGGACGAACTGAAA GCGCA GAT TGCGC GTGATGAATTAACCG ribF 20428 - 21369 + | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 31 21578 - 21560 - g 100 -3.1 -5.63857 | AAAAAGGCAAAAAAA CCTTCAT TCTGC ATGATGG CCCTCCTTATGCGAA TERM 32 22567 - 22546 - g 71 -9.5 -3.55622 | gap 1 GTGAACGTCTTCAAA GCG-AACGAC ATC GTCGTTGCGC TGCTGCAGGAAAAAG TERM 33 22630 - 22607 - g 81 -8.8 -4.38712 | overlap 22608 TGCACGTTGAGAAAA TGCAGCACAG CTAT CCGTGCTGCT GGCGTCACAAAACGC TERM 34 22629 - 22608 - g 81 -12.3 -3.22906 | overlap 22607 GCACGTTGAGAAAAT GCAGCACAG CTAT CCGTGCTGC TGGCGTCACAAAACG TERM 35 24061 - 24036 - g 71 -10.5 -2.88069 | gap 1, overlap 24033 TGCAGACTATAACGA CGCACCTGCTGA TGC TCAGCAGA-GCG AAGTACTCAAAGGGC ileS 21460 - 24228 + | isoleucyl-tRNA synthetase TERM 36 24345 - 24311 - g 71 -9.2 -3.44848 | opp_overlap 24335, overlap 24309 TCTGGGCAGCAAATA CCTGATCCTCCAGAAC TTT GCTCTGGGGGATACGG TCCCCCTGTTCCCGT lspA 24228 - 24722 + | lipoprotein signal peptidase TERM 37 24782 - 24727 - f 100 -25 -4.68451 | gap 1, overlap 24728 24729 AAAAACAATAATAAA CCCTGCCGGATGCGGCCTACAGATTGC TAC GAAATC-GTAGGCCGCATCCGGCAAAA ATCCTCAAAAATAAG TERM 38 24781 - 24728 - f 100 -26.3 -3.37411 | gap 1, overlap 24727 24729 AAAACAATAATAAAC CCTGCCGGATGCGGCCTACAGATTGC TAC GAAATC-GTAGGCCGCATCCGGCAAA AATCCTCAAAAATAA TERM 39 24780 - 24729 - f 100 -27.6 -2.60006 | gap 1, overlap 24728 24727 AAACAATAATAAACC CTGCCGGATGCGGCCTACAGATTGC TAC GAAATC-GTAGGCCGCATCCGGCAA AAATCCTCAAAAATA TERM 40 24886 - 24863 - g 88 -11 -4.14243 | opp_overlap 24863 CACTTCACGCTAAAA CTCGACGATG GCAC CACCGCCGAG TCTACTCGCAACAAC slpA 24809 - 25258 + | FKBX-type 16KD peptidyl-prolyl cis-trans isomerase ispH 25260 - 26210 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 41 26239 - 26258 + F 100 -9.3 -5.24129 | opp_overlap 26239, overlap 26256 TAAGTTATGCGAAAA TGCCGGT CTTGTT ACCGGCA TTTTTTATGAAGAAA TERM 42 26258 - 26239 - f 79 -9.3 -4.15453 | opp_overlap 26239 26256 TAAGTTATGCGAAAA TGCCGGT CTTGTT ACCGGCA TTTTTTATGAAGAAA yaaF 26276 - 27190 + | ribonucleoside hydrolase RihC dapB 27405 - 28178 + | dihydrodipicolinate reductase TERM 43 28234 - 28252 + F 79 -3.1 -5.32396 | opp_overlap 28234 TTTATTAATTATAAA GGGCT TTAATTTTT AGCCC TTTTATTTTTGGTGT TERM 44 29570 - 29542 - g 73 -3.7 -4.84761 | overlap 29543 29566 AGATGTGGAGAAAAA CGTGGTGATGATC ACC GCCCAGAACCACG GTTTTGCGGTGGATG carA 28634 - 29782 + | carbamoyl phosphate synthase small subunit TERM 45 32384 - 32365 - g 71 -9.2 -3.53012 | CCGTTTGTCTCCAAA GCCACCGG CGTA CCGCTGGC AAAAGTGGCGGCGCG carB 29800 - 33021 + | carbamoyl phosphate synthase large subunit TERM 46 33075 - 33094 + F 100 -10 -6.07627 | opp_overlap 33073 33075 ATCGAATAACTAATA CGGTTCTC TGAT GAGGACCG TTTTTTTTTGCCCAT caiF 33178 - 33678 + | DNA-binding transcriptional activator CaiF TERM 47 33787 - 33809 + T 79 -8.4 -4.33165 | overlap 33802 TAGGCGTCACATCCG TCGTCCCC TGCAAAC GGGGGCGA TTTTCCTCCATTTGC caiE 34375 - 33764 - | carnitine operon protein CaiE caiD 35253 - 34360 - | carnitinyl-CoA dehydratase caiC 36806 - 35274 - | putative crotonobetaine/carnitine-CoA ligase TERM 48 35884 - 35865 - G 70 -10 -3.19003 | opp_overlap 35877, overlap 35854 ATAAGACGTCAGCAA GCGAACGC CGAA GCGTTCAC AAAATGCGTCTTTTT TERM 49 36710 - 36736 + g 75 -7.2 -4.38712 | ACCGGTTAACGACTC CGCCGCTGGATT CAC AAATCAGCGCCG TTTTATGACCGTAAA caiB 38097 - 36880 - | crotonobetainyl-CoA:carnitine CoA-transferase TERM 50 38133 - 38162 + r 100 -15.7 -3.21695 | opp_overlap 38150, overlap 38128 38142 ATGTAGCGCATGACT GCCGGATGCGGCG TAAA CGCCTTATCCGGC TTACATTCGTGCTCC caiA 39368 - 38226 - | crotonobetainyl-CoA dehydrogenase TERM 51 38506 - 38522 + g 73 -3.6 -4.7497 | overlap 38507 ATGGAGTTTAATTTG ATCGCC ATGTG GGCGAA TTTTTCCTGAATCAA caiT 40913 - 39399 - | L-carnitine/gamma-butyrobetaine antiporter TERM 52 40139 - 40154 + g 70 -4.6 -4.56597 | overlap 40140 AACTACGCACGTCAC TGGGGA TACG TCCCCC TTTTTGCAGACCGCA TERM 53 40863 - 40891 + g 87 -4.5 -5.30339 | GACGATTATTAATGG CGGAAAGAAAACC TTC GGTTCTATTCCCG TTTTTCTCTTTTCAT TERM 54 41053 - 41068 + H 83 -4 -5.28942 | CAATAAGCTGTATTC TGTGAT TGGT GTCACA TTTTTGTTTCGAGTG TERM 55 41219 - 41255 + H 73 -9.7 -3.35695 | overlap 41213 TTTTGCTACGCCATG TTTTCAATATTGGTGAG GAA CTTAACAATATTGAAAG TTGGATTTATCTGCG fixA 41385 - 42155 + | putative electron transfer flavoprotein FixA fixC 43162 - 44448 + | putative oxidoreductase FixC fixX 44445 - 44732 + | putative ferredoxin TERM 56 45248 - 45266 + G 77 -12.4 -2.80113 | CCGCGATGTGGTATG TCGGCGCG ACC TGCGCCGA TCTGGTCGGCTACTG yaaU 44791 - 46185 + | putative transport protein yabF 46233 - 46763 + | glutathione-regulated potassium-efflux system ancillary protein KefF TERM 57 47735 - 47725 - g 75 -6.8 -4.42062 | opp_overlap 47724 47725 47728 CAGGTGCCAAATAAA CAGC GTC GCTG GTTTGCGGTGTTGTT kefC 46756 - 48618 + | glutathione-regulated potassium-efflux system protein KefC folA 48809 - 49288 + | dihydrofolate reductase TERM 58 49312 - 49346 + T 82 -12.1 -3.322 | opp_overlap 49305 49302, overlap 49313 AGAATTTACGGCTAG TGCCGGATGCGACGC CGGTC GCGTCTTATCCGGCC TTCCTGTATCAGGCT TERM 59 49313 - 49345 + T 90 -15.6 -2.58999 | opp_overlap 49305 49302, overlap 49312 GAATTTACGGCTAGT GCCGGATGCGACGC CGGTC GCGTCTTATCCGGC CTTCCTGTATCAGGC apaH 50208 - 49366 - | diadenosine tetraphosphatase apaG 50592 - 50215 - | ApaG TERM 60 50303 - 50324 + g 72 -8.7 -3.71527 | gap 1, overlap 50316 ATCATTTCGTAGTGA CCCTGCATGG TGC CCA-GCGGGG TTTCAATGATTGCAC TERM 61 50394 - 50376 - G 76 -11 -3.30124 | opp_overlap 50373 50376 CGCCAGGCGCGATAA GTGGCTGG ACG CCAACCAC TCCTTCTCCCTGGAC ksgA 51416 - 50595 - | dimethyladenosine transferase pdxA 52402 - 51413 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 62 52268 - 52251 - G 73 -9.1 -3.57263 | AGGGTGAGCGGCAAA CCGAGCA TCGC TGCCCGG TCGGTAAGGAGAGTG surA 53688 - 52402 - | peptidyl-prolyl cis-trans isomerase SurA imp 56095 - 53741 - | organic solvent tolerance protein TERM 63 55593 - 55616 + g 70 -6.8 -4.10007 | gap 1, opp_overlap 55583 55593, overlap 55583 CAGGAGGTAAAGCTA CCGTTAT-CCA GAA TGGTATAGCGG TTTTCGCCACGTTGT TERM 64 56485 - 56471 - g 70 -7.1 -4.11216 | CCCGTAGCCGTAAAA TGGCG TGGTT CGCCA ACCAGCGTGAGCGTC TERM 65 56488 - 56508 + G 74 -3.1 -5.00884 | opp_overlap 56490, overlap 56496 GCGTGGTTCGCCAAC CAGCGTGAG CGT CAGGCGCTG TTTTTTGCCACCACT djlA 56350 - 57165 + | DNA-J like membrane chaperone protein TERM 66 57218 - 57174 - T 72 -9.1 -3.6512 | opp_overlap 57192 57194, overlap 57189 57191 57192 TAAATAAGTTTTAAA CTGTAGGCCTGATAAGACGCG GCC CGCGTCGCATCAGGCAATCGG CGCACAATTGCCGGA TERM 67 57203 - 57189 - T 79 -11.4 -3.30124 | opp_overlap 57192 57194, overlap 57174 57191 57192 CTGTAGGCCTGATAA GACGCG GCC CGCGTC GCATCAGGCAATCGG TERM 68 57248 - 57191 - T 71 -9.8 -3.21924 | gap 1, opp_overlap 57192 57194, overlap 57189 57174 57192 57226 GTAGGCCTGATAAGA CGCGGCCCGCGTCGCATCAGGCAATCG GCGCA CAATTGCCGGATGCGGCGTGAAC-GCC TTATCCGCCTACCGA TERM 69 57192 - 57247 + T 73 -11.1 -2.58544 | gap 1, opp_overlap 57189 57174 57191 57192 57226, overlap 57194 TAGGCCTGATAAGAC GCGGCCCGCGTCGCATCAGGCAATCG GCGCA CAATTGCCGGATGCGGCGTGAAC-GC CTTATCCGCCTACCG TERM 70 57247 - 57192 - T 80 -13.3 -2.5294 | gap 1, opp_overlap 57192 57194, overlap 57189 57174 57191 57226 TAGGCCTGATAAGAC GCGGCCCGCGTCGCATCAGGCAATCG GCGCA CAATTGCCGGATGCGGCGTGAAC-GC CTTATCCGCCTACCG yabO 57941 - 57282 - | 23S rRNA/tRNA pseudouridine synthase A TERM 71 57674 - 57710 + g 72 -8.6 -3.72576 | gap 1, overlap 57676 GCTTTTTCGGCTCGC GCTCGCGGAACTGGCGT TTTA ACTCCCGCTCCGCG-GC TTTGGTCAGCGCCAC TERM 72 57901 - 57877 - G 95 -13.7 -3.29273 | opp_overlap 57899, overlap 57875 57899 TTGACCACCATAATA TGGTCATCCTG ATA CAGGATAACCA ACCAGGGTTCCTGCG hepA 60859 - 57953 - | ATP-dependent helicase HepA TERM 73 58002 - 58014 + g 76 -9.1 -3.77219 | TCCAGACGCCAACCT GCCTG ATC CAGGC TTTCCATTACCTGCT TERM 74 59721 - 59745 + g 70 -10 -3.16944 | overlap 59719 AGCGGCTCGATATCC TGCTCGCCGA TCATC TCGCCGAGCA TGTTCAGTTCGTCAT polB 63375 - 61024 - | DNA polymerase II TERM 75 61090 - 61079 - G 77 -5.8 -4.64676 | overlap 61080 TTATCCTCAATAAAA GGGA GTAT TCCC TCCGCCACGGGTTGT TERM 76 63416 - 63396 - R 100 -8.3 -5.19261 | opp_overlap 63396 AAATCCATCAAAAAA CCAGGCT TGAGTAT AGCCTGG TTTCGTTTGATTGGC TERM 77 63396 - 63416 + r 76 -8.3 -4.14598 | opp_overlap 63396 AAATCCATCAAAAAA CCAGGCT TGAGTAT AGCCTGG TTTCGTTTGATTGGC araD 64145 - 63450 - | L-ribulose-5-phosphate 4-epimerase TERM 78 64205 - 64238 + r 70 -9.5 -3.05816 | opp_overlap 64194 64215, overlap 64227 64228 AAATCGCAGCGCGTA GGCCTGATAAGACGC GCTA GCGTCGCATCAGGCG TTGAATGCCGGATGC TERM 79 64227 - 64255 + r 80 -9.5 -3.9941 | opp_overlap 64215, overlap 64205 64228 TAAGACGCGCTAGCG TCGCATCAGGCGT TGA ATGCCGGATGCGC TTTGCTTATCCGGCC TERM 80 64228 - 64254 + r 82 -13 -2.99325 | overlap 64205 64227 AAGACGCGCTAGCGT CGCATCAGGCGT TGA ATGCCGGATGCG CTTTGCTTATCCGGC araA 65847 - 64345 - | L-arabinose isomerase araB 67558 - 65858 - | ribulokinase TERM 81 66173 - 66197 + g 77 -9.9 -3.61715 | GACCTGGTTTTTCCG CGCGATGCCGC CCA GCGCCATCACG TTATTGACGGCGATC TERM 82 66920 - 66897 - G 72 -5.3 -4.49958 | gap 2, opp_overlap 66900, overlap 66899 AGCTCATCAAAGAAA CTGGCTGGCGG CAAG CCGCC--CCAG CTTTCGTGCCACAGA TERM 83 67667 - 67653 - H 82 -7.2 -4.87665 | TCTTATGGATAAAAA TGCTAT GGC ATAGCA AAGTGTGACGCCGTG araC 67897 - 68775 + | DNA-binding transcriptional regulator AraC TERM 84 69399 - 69418 + G 76 -4.2 -4.92314 | overlap 69401 GCGAGTTTAAATGGT TGCTGCTG GCGA CGGCGGTA TTTTTGTGGGTTGGT yabI 68861 - 69625 + | hypothetical protein thiQ 70437 - 69739 - | thiamine transporter ATP-binding subunit thiP 72031 - 70421 - | thiamine transporter membrane protein TERM 85 70511 - 70499 - G 78 -10.5 -3.48036 | TAGTAGCAGAATTAA CGCGG TGA CCGCG CCGTCCTGGCTGCGA TERM 86 70877 - 70865 - G 77 -6.9 -4.49314 | GAGCAGTAAAAAGAA GCCGG TAG CCAGC ACAATCCCCGGCATG TERM 87 71520 - 71487 - G 81 -4.3 -5.10029 | opp_overlap 71512, overlap 71488 ACGAAGCGGAAAAAA TGCCAGCCGCGCATC CCAA GCTGGGCGGCAAGCT GACGTTGTTCGCCGG tbpA 72990 - 72007 - | thiamine transporter substrate binding subunit TERM 88 72854 - 72864 + g 91 -5.4 -5.32699 | overlap 72857 TCGCAGTTACAGTCG GCTT CAA AAGC TTTTTTGATCTTTGG yabN 74809 - 73154 - | transcriptional regulator SgrR TERM 89 74280 - 74268 - G 71 -2.6 -4.89063 | GGACGCAAAAAGAAA CGCC AGTGA AGCG GTGATATTTGCTGCC TERM 90 75075 - 75095 + r 100 -9.7 -6.17268 | GTGTAAAATCACCCG CCAGCAGAT TAT ACCTGCTGG TTTTTTTTATTCTCG TERM 91 76350 - 76331 - R 100 -15 -3.64599 | GGACGATAGCGGAAA GCCCGGTC ATTT GACCGGGC AAGGGGTCTAATTCA leuD 76963 - 76358 - | isopropylmalate isomerase small subunit TERM 92 76794 - 76804 + g 72 -4.6 -4.72272 | overlap 76799 ACGAAGTCCGGGTTT GGCT GTT GGCC TTTTTCATCGAGAAA leuC 78374 - 76974 - | isopropylmalate isomerase large subunit TERM 93 77893 - 77905 + g 82 -9.1 -4.19624 | ATGGTCTTCGCACGG CCCTG TTT CAGGG TTTGTGTTGCCAGTA leuB 79411 - 78377 - | 3-isopropylmalate dehydrogenase leuA 81039 - 79468 - | 2-isopropylmalate synthase TERM 94 80173 - 80184 + g 72 -5.8 -4.41616 | AGCGAATGCGCCGCT GCCA ACAA TGGC TTTGTTTGCCGGGAT TERM 95 80889 - 80879 - G 72 -6.8 -4.19817 | TGCACCGATTCAAAA TCGC CCG GCGA AGAGACGGGGAAACC TERM 96 81090 - 81107 + H 100 -14.1 -5.65927 | opp_overlap 81090 TCGGGCATAAAAAAA CCCGCGC AATG GCGCGGG TTTTTTGTTTGACTG TERM 97 81107 - 81090 - H 100 -14.1 -5.60993 | opp_overlap 81090 TCGGGCATAAAAAAA CCCGCGC AATG GCGCGGG TTTTTTGTTTGACTG TERM 98 82179 - 82189 + G 70 -6.8 -4.07568 | GTACAAAATGAATTG CCTG GTT CAGG TTTTGAACCCGCGAG leuO 81702 - 82823 + | leucine transcriptional activator TERM 99 82829 - 82868 + F 100 -19.6 -5.49234 | opp_overlap 82829 82836, overlap 82862 CAAACGCTAACTGAA TGCAGAATAGGCCAGACA TGAA TGTCTGGTTTATTCTGCA TTTTTTATTGAATGT TERM 100 82868 - 82829 - f 100 -15.2 -3.1996 | opp_overlap 82829 82862, overlap 82836 CAAACGCTAACTGAA TGCAGAATAGGCCAGACA TGAA TGTCTGGTTTATTCTGCA TTTTTTATTGAATGT TERM 101 82862 - 82887 + F 71 -3.4 -4.79955 | opp_overlap 82829 82885, overlap 82829 TGAATGTCTGGTTTA TTCTGCATTT TTTATT GAATGTAGAA TTTTATTCTGAATGT TERM 102 82987 - 83003 + F 72 -5.1 -4.68612 | opp_overlap 82987 TTATTATCAATTTAA TCCTTCG TAA TGGAGGA TTTTATCGTTTCTTT TERM 103 83100 - 83112 + F 83 -6.3 -5.08824 | AGATCGGACGGTTAA TGTGT TTT ACACA TTTTTTCCGTCAAAC TERM 104 84454 - 84444 - g 70 -6.8 -4.07885 | CACTGGGCGTCAAAA TGGC GTT GCCA GAAGAAACCGTGGTT ilvI 83141 - 84865 + | acetolactate synthase 3 catalytic subunit ilvH 84868 - 85359 + | acetolactate synthase 3 regulatory subunit TERM 105 85385 - 85405 + G 100 -9.7 -5.41143 | AGTGCGCAATTTGCA GCCCAACAT GTC ACGTTGGGC TTTTTTTGCGAAATC fruL 85371 - 85457 + | fruR leader peptide fruR 85539 - 86543 + | DNA-binding transcriptional regulator FruR TERM 106 86589 - 86558 - T 100 -13.8 -5.06816 | gap 1 ATCCGCGAACAAAAA TACGCGCCAG-GTGA ATT TCCCTCTGGCGCGTA GAGTACGGGACTGGA SFV_0072 86785 - 86540 - | putative IS1 encoded protein insB 86860 - 87363 + | IS1 ORF2 yabB 87922 - 88380 + | cell division protein MraZ TERM 107 88621 - 88649 + G 76 -12.4 -2.63073 | overlap 88620 CCACGGACCTTTCTC CGCGCTGGGCGA ATACG TTGCCGAGCGCG ATCTTATTGGCAAGA TERM 108 88715 - 88726 + G 70 -3.6 -4.61873 | CCGCAACTTGATGAT GCTG AACG CGGC TTTTCCTTTATGCGC mraW 88382 - 89323 + | S-adenosyl-methyltransferase MraW TERM 109 89644 - 89631 - g 76 -8.1 -4.18494 | opp_overlap 89630 89628 GATCGCCACGGAAAA GCTGC AAAT GCAGC ATGTTGATCCGTCAC ftsL 89320 - 89685 + | cell division protein FtsL TERM 110 89748 - 89768 + G 78 -7.6 -4.37734 | opp_overlap 89748 89746 89749, overlap 89749 ACGTCAGGAAGAACA TGCCAACT TTATC AGTTGGCG TTTTGCGTTGTTATG TERM 111 91267 - 91288 + G 72 -8.7 -3.7941 | gap 1, opp_overlap 91236, overlap 91270 GTTGCGCCTGCGAGT CAGCC-GCGC TTC GCGCTGGTTG TTGTTATCAACGATC TERM 112 91270 - 91285 + G 70 -6.8 -4.02817 | gap 1, opp_overlap 91236, overlap 91267 GCGCCTGCGAGTCAG CC-GCGC TTC GCGCTGG TTGTTGTTATCAACG TERM 113 91326 - 91344 + G 73 -11.6 -2.67171 | opp_overlap 91323 91320, overlap 91323 91325 91324 91340 GGGTAAATACTACGG CGGCGCCG TTT CCGCGCCG GTCTTTGGTGCCATC ftsI 89701 - 91467 + | penicillin-binding protein 3; peptidoglycan synthetase TERM 114 91942 - 91924 - g 72 -5.2 -4.53303 | opp_overlap 91926, overlap 91926 GATCCCGACAGAAAA TACTACCG GTT CGGCAGTT GATGTTCAGCATGAG TERM 115 91940 - 91926 - g 72 -7.8 -3.87627 | opp_overlap 91926, overlap 91924 TCCCGACAGAAAATA CTACCG GTT CGGCAG TTGATGTTCAGCATG TERM 116 92565 - 92555 - g 81 -6.8 -4.62783 | overlap 92556 GATGCACTGGAAAAA GCCT TAC AGGC GGCGCGCCTGCACTG murE 91454 - 92941 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 117 93378 - 93339 - g 75 -11.4 -3.07443 | opp_overlap 93347, overlap 93348 TTATACGGCAGGCAA TCTCAACAACGACATCGG TGTA CCGATGACGCTGTTGCGC TTAACGCCGGAATAC TERM 118 93369 - 93348 - g 77 -10.1 -3.6849 | opp_overlap 93347, overlap 93339 AGGCAATCTCAACAA CGACATCGG TGTA CCGATGACG CTGTTGCGCTTAACG TERM 119 94136 - 94118 - g 70 -5.2 -4.42806 | opp_overlap 94132, overlap 94122 GCATGGGTAAACAAA GCCATGCT ATC AGCACCGC CAGCGGCGTTGGCGA murF 92938 - 94296 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 120 94883 - 94905 + G 74 -9.9 -3.5241 | gap 1, opp_overlap 94865, overlap 94881 GACCGATGGTCTTGA CGGTCTGGCA ATTA TGCC-GACCG TATTTGTCGCCGGTG mraY 94290 - 95372 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 121 95454 - 95474 + G 72 -10.3 -3.35996 | TGGACTTTTTCCTCG CTCGCGGTG TGA CGCCGCGCG TTATGGATACGCGTA murD 95375 - 96691 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase ftsW 96691 - 97935 + | cell division protein FtsW TERM 122 98440 - 98455 + G 73 -9 -3.65351 | ATGTGCTGGCGCTGC CGTTGC CGCA GCAACG TTTGGCTGGACGTGA murG 97932 - 98999 + | N-acetylglucosaminyl transferase murC 99053 - 100528 + | UDP-N-acetylmuramate--L-alanine ligase ddl 100521 - 101441 + | D-alanine--D-alanine ligase ftsQ 101443 - 102273 + | cell division protein FtsQ ftsA 102363 - 103532 + | cell division protein FtsA ftsZ 103593 - 104744 + | cell division protein FtsZ lpxC 104845 - 105762 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 123 105789 - 105832 + F 100 -4.5 -6.17292 | opp_overlap 105789 105801 CTGTCGTATAAAATT CGACTGGCAAATCTGGC ACTCTCTCCG GCCAGGTGAACCAGTCG TTTTTTTTTGAATTT yacA 105840 - 106505 + | SecA regulator SecM TERM 124 108342 - 108355 + G 75 -4.5 -4.8622 | opp_overlap 108342 CCTGTCGATGGAAGA TGCGC TGAT GCGTA TTTTTGCTTCCGACC TERM 125 109167 - 109127 - g 74 -8.9 -3.96327 | AGCGTTTAGCACAAA TGCAGCAGCTTAGCCATCA GGA TGACGACTCTGCAGCCGCA GCTGCACTGGCGGCG secA 106567 - 109272 + | preprotein translocase subunit SecA TERM 126 109294 - 109311 + F 100 -12.7 -5.33866 | opp_overlap 109294 ACAGTTGAAGTAAAA GGCGCAG GATT CTGCGCC TTTTTTATAGGTTTA TERM 127 109311 - 109294 - f 100 -12.7 -4.42639 | opp_overlap 109294 ACAGTTGAAGTAAAA GGCGCAG GATT CTGCGCC TTTTTTATAGGTTTA TERM 128 109559 - 109542 - g 70 -4.1 -4.62069 | overlap 109544 TCGCTATTTGAAAAA CTGGAAT ATGA ATTCCCG GACAGGCATATAACT mutT 109332 - 109721 + | nucleoside triphosphate pyrophosphohydrolase TERM 129 109722 - 109751 + T 76 -12.1 -2.72144 | opp_overlap 109731 109732, overlap 109721 109732 CTTAAGCGTCTGTAG GTCGGATAAGGCG TTCA CGCCGCATCCGAC ATTTGCACAAGATGC TERM 130 109797 - 109765 - T 76 -12 -2.53449 | opp_overlap 109732 109774, overlap 109732 109764 109762 ACATTTGCACAAGAT GCCTGATGCGACGC TGTCC GCGTCTTATCAGGC CTACGTGAGGCATCA yacG 110018 - 109821 - | zinc-binding protein yacF 110771 - 110028 - | hypothetical protein TERM 131 110383 - 110373 - G 70 -6.8 -4.08485 | TGTAGGTAAATCAAA GCTG CAA CAGC CGCCTGGGATGCTCA coaE 111391 - 110771 - | dephospho-CoA kinase TERM 132 111364 - 111329 - G 100 -13.4 -3.81951 | overlap 111330 TCCGAGATCAGCAAA CGCATTGGCAACGGTA CTCT TACCACTGCCAATGCC TCCCGTTAAGGCAAC TERM 133 111363 - 111330 - G 100 -16.9 -2.88849 | overlap 111329 CCGAGATCAGCAAAC GCATTGGCAACGGTA CTCT TACCACTGCCAATGC CTCCCGTTAAGGCAA guaC 111616 - 112659 + | guanosine 5'-monophosphate oxidoreductase TERM 134 112668 - 112693 + T 100 -16.2 -3.32963 | CCTGTAATCTCCCAA CGCTGGCGTG GAGCAA CACGCCAGCG TTATCCCATCCCACT hofC 113896 - 112694 - | type IV pilin biogenesis protein TERM 135 113366 - 113352 - G 73 -4.2 -4.77165 | TCCGGCAGAACAAAA TGCAGC ATT GCCACA ACCACCATGATTGCC TERM 136 113980 - 114004 + r 72 -9.2 -3.55622 | opp_overlap 113977 TTTTCAAAAAGCGTA CGCATACCCG CCTGT CGGGCGTGCG TTTCCAGCGATTCAA ppdD 115483 - 115043 - | putative major pilin subunit TERM 137 115436 - 115423 - G 72 -6.7 -4.15453 | CAATGGAGCTTAAAA TGGCA ATGA TGCCA ATAACCACCATCAGT nadC 116579 - 115686 - | quinolinate phosphoribosyltransferase ampD 116667 - 117218 + | N-acetyl-anhydromuranmyl-L-alanine amidase ampE 117215 - 118069 + | regulatory protein AmpE TERM 138 118104 - 118076 - T 71 -10.2 -2.69151 | overlap 118073 TTGGTGTAGAGATTA TTGCCCTCACCC TGTAC GGGTGAGGGCGT AGAGAGATTAATGCG aroP 119485 - 118112 - | aromatic amino acid transporter pdhR 119993 - 120790 + | transcriptional regulator PdhR TERM 139 120911 - 120864 - f 73 -11.4 -2.70979 | opp_overlap 120881, overlap 120860 120861 120867 CGGTAACTAAACGTA GAACCTGTCTTATTGAGCTTTC TGGC GAGAGTTCAATGGGACAGGTTC CAGAAAACTCAACGT TERM 140 121170 - 121158 - g 78 -9.1 -3.9461 | opp_overlap 121157 CCCGTTGAAGAACAA CCGGA GTA TCCGG GTAATCTGGAACTGG TERM 141 121387 - 121402 + G 75 -11.8 -2.96695 | overlap 121382 121384 AGGGCCACATCTCCC CGGGCG TTTA CGCCCG TGCTTTCCTGGAAGG aceE 120951 - 123614 + | pyruvate dehydrogenase subunit E1 aceF 123629 - 125509 + | dihydrolipoamide acetyltransferase TERM 142 125537 - 125516 - f 95 -11.5 -4.43477 | opp_overlap 125518, overlap 125518 GTGATGTAAGTAAAA GAGCCGGCC CAAC GGCCGGCTT TTTTCTGGTAATCTC TERM 143 125535 - 125518 - f 100 -14.1 -3.82321 | opp_overlap 125518, overlap 125516 GATGTAAGTAAAAGA GCCGGCC CAAC GGCCGGC TTTTTTCTGGTAATC TERM 144 125518 - 125535 + F 100 -14.1 -5.32882 | opp_overlap 125518 125516 GATGTAAGTAAAAGA GCCGGCC CAAC GGCCGGC TTTTTTCTGGTAATC TERM 145 126698 - 126670 - g 75 -5.1 -4.66833 | GCCGAACGGTAAAAA CCTCGACGCAGGC AAA GCTGGCGTGGAAG TTGACGACCGTGGTT lpdA 125831 - 127258 + | dihydrolipoamide dehydrogenase TERM 146 127293 - 127259 - T 72 -9.4 -3.62255 | opp_overlap 127249 GCGAAGAAGAAGTAA TTTTTCGTTTGCCGGA ACA TCCGGCAATTAAAAAA GCGGCTAACCACGCC TERM 147 127310 - 127294 - T 85 -6.5 -5.26875 | opp_overlap 127294 CCGGCAATTAAAAAA GCGGC TAACCAC GCCGC TTTTTTTACGTCTGC TERM 148 127294 - 127310 + T 91 -6.5 -5.50499 | opp_overlap 127294 CCGGCAATTAAAAAA GCGGC TAACCAC GCCGC TTTTTTTACGTCTGC yacH 129176 - 127329 - | hypothetical protein TERM 149 127481 - 127466 - G 70 -4.7 -4.56597 | CTTTCTCCCGAAAAA CCTGA CGTTGT TCAGG TGATGCCGATTGTAT TERM 150 127527 - 127547 + g 73 -3.9 -4.8622 | overlap 127530 ATCACGTTGCTGTTG GTTCAGTGG GCG CTGCTGTAC TTTTTCCTTAAACAC TERM 151 129312 - 129300 - H 71 -7.7 -3.86346 | GGATTCGTTGAGAAA GGTGA TTA TCACC ATGCGAATTAACGAA TERM 152 129655 - 129644 - g 77 -7.2 -4.57837 | overlap 129645 129646 AGAGCTGCTGAAAAA CCCG CCCG CGGG CGAAGAAGAATTCCT TERM 153 131735 - 131721 - g 72 -7.8 -3.87815 | CTGGATGCGCACAAA GGTCAG TTG CCGACC CGCCTGTGGGTGGCA acnB 129510 - 132134 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 154 132195 - 132170 - f 93 -12.7 -3.66897 | gap 1, opp_overlap 132170, overlap 132162 GCATAAACGACACAA TGCCCGGTGAAT GAG ATTC-CCGGGCA TTTTTTATTTCTAAA TERM 155 132170 - 132195 + F 100 -12.7 -5.72622 | gap 1, opp_overlap 132170 132162 GCATAAACGACACAA TGCCCGGTGAAT GAG ATTC-CCGGGCA TTTTTTATTTCTAAA yacL 132261 - 132671 + | hypothetical protein TERM 156 132704 - 132677 - T 100 -17.8 -4.59982 | GCAGAAGTAAATAAA TCTGGCGGAGCC TGGG AGCTCCGCCAGA GCCGTTAAACAGCTG speD 133503 - 132709 - | S-adenosylmethionine decarboxylase speE 134385 - 133519 - | spermidine synthase TERM 157 134467 - 134442 - RH 74 -10.5 -3.24255 | opp_overlap 134442 134444, overlap 134435 134444 CAACATAATAGCTAA CATTGACCGCG GATG CACGGTCAATA TTTCTACAAAAAGGT TERM 158 134465 - 134444 - RH 77 -10.9 -3.17362 | opp_overlap 134444 134442, overlap 134442 134435 ACATAATAGCTAACA TTGACCGCG GATG CACGGTCAA TATTTCTACAAAAAG yacC 135009 - 134491 - | hypothetical protein TERM 159 134958 - 134968 + gH 76 -4 -4.88918 | GGGGAAGGACTATGC TCAA CGT TTGA TTTTGTTTCGCCTGC TERM 160 136389 - 136377 - gR 70 -5.5 -4.3739 | overlap 136384 TATCTTGTCAGAAAA TGGCA AAC CGCCA GCGGCTCATCGCGCG yacK 135004 - 136554 + | multicopper oxidase TERM 161 136596 - 136573 - TR 82 -11 -3.57462 | opp_overlap 136570 136575, overlap 136575 GACCGTATTCGGAAA TATGCCCGGA TCTC TCCGGGCATT ATGGTTATTTCACAT TERM 162 136575 - 136594 + Tr 93 -13.6 -3.65135 | opp_overlap 136573 136575, overlap 136570 CCGTATTCGGAAATA TGCCCGGA TCTC TCCGGGCA TTATGGTTATTTCAC TERM 163 136594 - 136575 - TR 90 -13.6 -3.36515 | opp_overlap 136575 136570, overlap 136573 CCGTATTCGGAAATA TGCCCGGA TCTC TCCGGGCA TTATGGTTATTTCAC gcd 139009 - 136601 - | glucose dehydrogenase TERM 164 138152 - 138162 + g 78 -8.2 -4.15328 | overlap 138153 138159 ATCCGCCATCACTTC CGGC GAA GCCG TTTCTGCTTTGGCTT TERM 165 139120 - 139132 + H 71 -6.9 -4.1822 | TTTTACTGGTATACT GCGCG TCT TGCGC TTTGTTGCGGTGCCA hpt 139134 - 139733 + | hypoxanthine-guanine phosphoribosyltransferase TERM 166 139737 - 139770 + T 79 -3.1 -5.4182 | gap 1, overlap 139740 139741 CTGGACGAGTAAGTG TGAAGTTGCCGGATGT GTT GCATCCGGCA-TGGCA TTTTTATTTGTGGTT yadF 140436 - 139774 - | carbonic anhydrase TERM 167 141059 - 141075 + G 70 -3.5 -4.60924 | TGGATATTGAACTTC GCCGCTC AAT GTGGGGC TTTTTGAAGGATTTA yadG 140620 - 141471 + | putative ATP-binding component of a transport system yadH 141468 - 142238 + | hypothetical protein TERM 168 142245 - 142274 + F 95 -12.9 -4.10657 | overlap 142246 CGTAGCTAAGGCTAT TTCCTCTCCTCTG GATT CGGGGGAGAGGAG TTTTGACGGCTATCA TERM 169 142246 - 142273 + F 85 -14.2 -3.06073 | overlap 142245 GTAGCTAAGGCTATT TCCTCTCCTCTG GATT CGGGGGAGAGGA GTTTTGACGGCTATC yadE 142847 - 144076 + | hypothetical protein panD 144460 - 144080 - | aspartate alpha-decarboxylase TERM 170 144159 - 144143 - G 73 -9.4 -3.63744 | opp_overlap 144127 144153, overlap 144141 GTCGCCTTCAAAATA GGCGAC ATTGG GTCGCC AGGTGCGAGCTTCTT TERM 171 144493 - 144507 + H 82 -11.4 -3.56099 | opp_overlap 144493 CCTGTCGTTAACGAA GCAGGC GGT GCCTGC TTTGAGGAAATTCTC TERM 172 144507 - 144493 - H 79 -11.4 -3.33696 | opp_overlap 144493 CCTGTCGTTAACGAA GCAGGC GGT GCCTGC TTTGAGGAAATTCTC yadD 144734 - 145636 + | hypothetical protein TERM 173 145705 - 145675 - T 86 -12 -3.51232 | opp_overlap 145678, overlap 145678 CGTGGGGTAAATTAA TAACTGGCGCCA TCAGCCG TAGCGCCAGTTA AGTATTACGCCAGCT TERM 174 145702 - 145678 - T 77 -9.3 -3.89354 | opp_overlap 145678, overlap 145675 GGGGTAAATTAATAA CTGGCGCCA TCAGCCG TAGCGCCAG TTAAGTATTACGCCA panC 146561 - 145710 - | pantoate--beta-alanine ligase panB 147367 - 146573 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 175 147440 - 147476 + r 79 -10.8 -3.63694 | opp_overlap 147442 147445, overlap 147441 GGGCAATGATTTATC AATTACCGCACCGCCA GATGA TGGCGGTGCGGTGGAC TTATTAAGGGTAGGT TERM 176 147441 - 147475 + r 87 -14.3 -2.77895 | opp_overlap 147442 147445, overlap 147440 GGCAATGATTTATCA ATTACCGCACCGCCA GATGA TGGCGGTGCGGTGGA CTTATTAAGGGTAGG TERM 177 147474 - 147442 - R 83 -13.4 -3.20435 | opp_overlap 147441 147440, overlap 147445 GCAATGATTTATCAA TTACCGCACCGCCA GATGA TGGCGGTGCGGTGG ACTTATTAAGGGTAG TERM 178 147471 - 147445 - R 100 -19.5 -2.79276 | opp_overlap 147441 147440, overlap 147442 ATGATTTATCAATTA CCGCACCGCCA GATGA TGGCGGTGCGG TGGACTTATTAAGGG SFV_0125 147941 - 147480 - | hypothetical protein insB 148055 - 148558 + | IS1 ORF2 TERM 179 148703 - 148681 - T 79 -8 -4.3898 | opp_overlap 148683 ATGATTTTCAGAAAA TATTTATATT CGT AATATAAATA AATTACCATTTGCTT folK 149185 - 148706 - | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase pcnB 150546 - 149182 - | poly(A) polymerase I yadB 151535 - 150639 - | glutamyl-Q tRNA(Asp) synthetase TERM 180 150927 - 150917 - G 81 -6.8 -4.65895 | opp_overlap 150926 CTTTCCAGCCAAAAA GCTG GTA CAGC GAGATTTGCCTTACT TERM 181 151576 - 151552 - R 85 -5.6 -5.4505 | opp_overlap 151555, overlap 151555 TCTTTGAACAAAAAA TAAGGCGGGA GCATT TCCCGCCTGT GGTAAACGTGATGGA TERM 182 151555 - 151573 + r 79 -12.4 -2.79302 | opp_overlap 151552 151555 TTGAACAAAAAATAA GGCGGGAG CAT TTCCCGCC TGTGGTAAACGTGAT TERM 183 151573 - 151555 - R 100 -11.7 -4.81306 | opp_overlap 151555, overlap 151552 TTGAACAAAAAATAA GGCGGGA GCATT TCCCGCC TGTGGTAAACGTGAT dksA 152057 - 151602 - | DnaK transcriptional regulator DksA sfsA 152939 - 152235 - | sugar fermentation stimulation protein A TERM 184 152582 - 152603 + g 85 -8.7 -4.48175 | opp_overlap 152577 152582 GCAACATAAAGTCAA TACGGCTGC GTTC GGAGCCGTA TTTTACTTCGCTTTT TERM 185 152897 - 152887 - G 83 -5.4 -5.02476 | ACATCGGCTAAAAAA CGTT TGT AACG CTGAATTAGCGTCGC yadP 153697 - 152954 - | hypothetical protein TERM 186 153071 - 153060 - GH 74 -7.2 -4.23723 | TAAGACCAGTTAAAA CCCG GCGG CGGG AATGTCACCGCCTCG TERM 187 153322 - 153301 - GH 71 -7.3 -4.07568 | opp_overlap 153301 TCCGTCCGGCTAAAA GAGAAAGCG CCTT CTCTTTCTC TGCGCTCACTTCGCC hrpB 153558 - 155987 + | ATP-dependent RNA helicase HrpB TERM 188 156486 - 156498 + G 78 -9.1 -3.86346 | GGCAAGGTCTGGCAA CTGCC CGC GGCAG TTTATGGCCGAATGG TERM 189 157553 - 157539 - g 71 -3.4 -4.83615 | GACGCGGCAGAAAAA GCCGCC GTG GAAGGC ATTCCGGCACTGAAG mrcB 156183 - 158717 + | penicillin-binding protein 1b TERM 190 158759 - 158733 - f 100 -16.7 -3.61268 | CATCTAAGCGTGAAA TACCGGATGGC GAGTT GCCATCCGGTA AAATAACATCCCATC TERM 191 158842 - 158861 + F 76 -9.2 -3.68662 | GCTCAGATTGCGTAC CGCTTGCG AACC CGCCAGCG TTTCGAATATTATCT fhuA 159015 - 161180 + | ferrichrome outer membrane transporter TERM 192 161191 - 161212 + G 85 -11.5 -3.5774 | overlap 161192 161208 TCTAATTTCTCTTTT GGGGCACGG ATTT CCGTGCCCA TTTCACAAGTTGGCT TERM 193 161192 - 161211 + G 90 -15 -2.74322 | overlap 161191 161208 CTAATTTCTCTTTTG GGGCACGG ATTT CCGTGCCC ATTTCACAAGTTGGC fhuC 161189 - 162028 + | iron-hydroxamate transporter ATP-binding subunit TERM 194 162051 - 162079 + G 88 -11 -4.02856 | gap 1 CTTACCTCTTATTTC GCGCCGTCGACTG TTAA CGG-CGATGGCGC TTTCTCCGTTGTTAT fhuD 162028 - 162918 + | iron-hydroxamate transporter substrate-binding subunit TERM 195 163057 - 163071 + G 72 -4.3 -4.66163 | CGCCGGATATTGACG TCATC GAGCA GATGA TTTTTCACTACAGCT fhuB 162915 - 164897 + | iron-hydroxamate transporter permease subunit TERM 196 164901 - 164927 + T 78 -12.2 -2.58579 | opp_overlap 164885 164903, overlap 164900 CAGAGCCGTTAATAG AATGCCTCGCCC GGT GGGCGAGGCAAA ATTATCACAACTTCG TERM 197 164925 - 164903 - T 100 -19.2 -3.66288 | opp_overlap 164901 164900, overlap 164885 GAGCCGTTAATAGAA TGCCTCGCCC GGT GGGCGAGGCA AAATTATCACAACTT hemL 166212 - 164932 - | glutamate-1-semialdehyde aminotransferase TERM 198 166489 - 166465 - g 88 -11.4 -3.85698 | overlap 166468 CTCCCTCTTTAGAAA CACCGCAGGC CGCGC GCCTGCGACG CAGACAACTGATTCG TERM 199 166486 - 166468 - g 73 -11.7 -2.70946 | overlap 166465 CCTCTTTAGAAACAC CGCAGGC CGCGC GCCTGCG ACGCAGACAACTGAT TERM 200 167007 - 167025 + G 81 -4.4 -5.14682 | overlap 167009 CTGGCTGCGGCCTTT AACGCGCC GCT GGCGGGTA TTTTGTTTATTATCG TERM 201 167009 - 167023 + G 72 -7 -4.18024 | overlap 167007 GGCTGCGGCCTTTAA CGCGCC GCT GGCGGG TATTTTGTTTATTAT yadQ 166437 - 167858 + | chloride channel protein TERM 202 168146 - 168132 - g 75 -5.6 -4.68994 | opp_overlap 168132 ATGACCATCGAAAAA CAGGGC GTT GGCCTG GTGGTTGATCCGATG yadR 167940 - 168284 + | iron-sulfur cluster insertion protein ErpA TERM 203 168294 - 168322 + T 100 -14.7 -3.68024 | overlap 168296 ATCTAATCTGTTGTT CATGTGCCGGATA AAC TATCCGGCACATC TTCTCTCTTCAACGC TERM 204 168296 - 168320 + T 100 -17.3 -3.41962 | overlap 168294 CTAATCTGTTGTTCA TGTGCCGGATA AAC TATCCGGCACA TCTTCTCTCTTCAAC yadS 168954 - 168331 - | hypothetical protein yadT 169819 - 168992 - | vitamin B12-transporter protein BtuF TERM 205 169171 - 169159 - GR 72 -9.1 -3.50853 | CGCCTGTAATGACAA TCGCC TGT GGCGA GCGTGCTAACACCTG TERM 206 169775 - 169757 - GR 93 -11.7 -3.79419 | overlap 169755 TGGCGCGAGAAAAGA CAGGGCG ACCAG CGCCCTG AACAGTGATTTAGCC pfs 170483 - 169785 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase dgt 170567 - 172084 + | deoxyguanosinetriphosphate triphosphohydrolase TERM 207 172545 - 172565 + G 70 -11.1 -2.78216 | opp_overlap 172545 172542, overlap 172542 AGCAACAGAAATTCA TGGCGCTGG GTT CCGGCGTCA TCATTGATGCCGATA htrA 172214 - 173638 + | serine endoprotease TERM 208 173649 - 173672 + T 95 -14.6 -3.52093 | AGTAATCTCCCTCAA CCCCTTCCTG AATA CGGGAAGGGG TTCTCCTTACAATCT TERM 209 174795 - 174811 + T 79 -8.7 -4.27441 | ATGTGCAACCGCTGG CAACGTC AAA GGCGTTG TTTATTCATCGTAAT yaeH 175412 - 175026 - | hypothetical protein TERM 210 175284 - 175298 + g 75 -7.1 -4.40003 | AAACTTAACGCTCTT GGCGA AAAAC TCGCC TTTGTCTTTCTGGAA TERM 211 175685 - 175723 + r 77 -11 -3.15996 | opp_overlap 175675 175689 175692 175694, overlap 175683 175692 175694 AATTATTCTGAGCCA GAAAGCATACGGGCAGCA TCA TGCTGCCCGTATATGTAC TCTTAATCGATGGTA TERM 212 175719 - 175689 - R 100 -14.8 -3.92075 | opp_overlap 175685 175683 175692 175694, overlap 175692 175694 ATTCTGAGCCAGAAA GCATACGGGCAGCA TCA TGCTGCCCGTATAT GTACTCTTAATCGAT TERM 213 175716 - 175692 - R 100 -18.7 -3.02745 | opp_overlap 175692 175685 175683 175694, overlap 175689 175694 CTGAGCCAGAAAGCA TACGGGCAGCA TCA TGCTGCCCGTA TATGTACTCTTAATC TERM 214 175692 - 175716 + r 100 -18.7 -3.01637 | opp_overlap 175689 175692 175694, overlap 175685 175683 175694 CTGAGCCAGAAAGCA TACGGGCAGCA TCA TGCTGCCCGTA TATGTACTCTTAATC TERM 215 175694 - 175714 + r 100 -16.9 -3.05727 | opp_overlap 175692 175689 175694, overlap 175692 175685 175683 GAGCCAGAAAGCATA CGGGCAGCA TCA TGCTGCCCG TATATGTACTCTTAA TERM 216 175714 - 175694 - R 100 -16.9 -3.06711 | opp_overlap 175694 175692 175685 175683, overlap 175692 175689 GAGCCAGAAAGCATA CGGGCAGCA TCA TGCTGCCCG TATATGTACTCTTAA dapD 176550 - 175726 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 217 176067 - 176086 + g 75 -5.7 -4.61231 | gap 1 CGCCGCCGATGCCCA CG-CCACC GGAAA GGTGGACG TTTTTACCAATCTGC glnD 179253 - 176581 - | PII uridylyl-transferase TERM 218 179293 - 179308 + r 82 -11.8 -3.4758 | opp_overlap 179293, overlap 179287 TATCGCATTAAAAAA GCCGGC ATTC GCCGGC TTCATCTTATTCGTC TERM 219 179308 - 179293 - R 100 -11.8 -5.15634 | opp_overlap 179293 179287 TATCGCATTAAAAAA GCCGGC ATTC GCCGGC TTCATCTTATTCGTC map 180109 - 179315 - | methionine aminopeptidase TERM 220 180059 - 180069 + g 74 -2.4 -5.15381 | overlap 180048 GGCAGCCAGTCGGCC AGCG ACG CGCA TTTTTTCGATATCTT TERM 221 180887 - 180876 - g 72 -7.2 -4.24413 | overlap 180873 CTGACCAAGAAAGAA GCGC TGAT GCGC ACTCGTGAGCTGGAG rpsB 180279 - 181202 + | 30S ribosomal protein S2 TERM 222 181195 - 181183 - f 73 -7.7 -4.16842 | CCCAGGCGGAAGAAA GCTTC GTA GAAGC TGAGTAATAAGGCTT TERM 223 181377 - 181397 + F 100 -11.1 -4.89729 | GTACACGTTTGGTTA GGGGGCC TGCATAT GGCCCCC TTTTTCACTTTTATA TERM 224 181632 - 181616 - g 77 -3 -5.13521 | gap 1, overlap 181617 181620 AAAGCAGCGAAAAAA GCAGGCA ACGT TGC-TGC TGACGGCGTGATCAA tsf 181460 - 182311 + | elongation factor Ts TERM 225 182322 - 182343 + F 100 -13.7 -4.84761 | opp_overlap 182322 182325 CTTAATTATCAAAAA GGAGCCGCC TGAG GGCGGCTTC TTTTTGTGCCCATCT TERM 226 182343 - 182322 - f 100 -11.5 -4.81083 | opp_overlap 182322, overlap 182325 CTTAATTATCAAAAA GGAGCCGCC TGAG GGCGGCTTC TTTTTGTGCCCATCT TERM 227 182340 - 182325 - f 82 -11.8 -3.30145 | opp_overlap 182322, overlap 182322 AATTATCAAAAAGGA GCCGCC TGAG GGCGGC TTCTTTTTGTGCCCA pyrH 182458 - 183183 + | uridylate kinase frr 183475 - 184032 + | ribosome recycling factor TERM 228 184032 - 184012 - f 76 -8.3 -4.14627 | opp_overlap 184012 184013 184015, overlap 184013 184015 CTGGCAGACAAAGAA GCAGAACTG ATG CAGTTCTGA TTTCTTGAACGACAA TERM 229 184012 - 184032 + F 76 -8.3 -4.15044 | opp_overlap 184012 184013 184015, overlap 184013 184015 CTGGCAGACAAAGAA GCAGAACTG ATG CAGTTCTGA TTTCTTGAACGACAA TERM 230 184013 - 184031 + F 78 -11.8 -3.08812 | opp_overlap 184012 184013 184015, overlap 184012 184015 TGGCAGACAAAGAAG CAGAACTG ATG CAGTTCTG ATTTCTTGAACGACA TERM 231 184031 - 184013 - f 78 -11.8 -3.08294 | opp_overlap 184013 184012 184015, overlap 184012 184015 TGGCAGACAAAGAAG CAGAACTG ATG CAGTTCTG ATTTCTTGAACGACA TERM 232 184045 - 184093 + F 100 -11.8 -5.27206 | gap 1, opp_overlap 184051, overlap 184046 184051 TGATTTCTTGAACGA CAAAAACGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCGTTTTGC TTTTTATTCTGTCTC TERM 233 184046 - 184092 + F 100 -15.3 -3.74697 | gap 1, opp_overlap 184051, overlap 184045 184051 GATTTCTTGAACGAC AAAAACGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCGTTTTG CTTTTTATTCTGTCT TERM 234 184087 - 184051 - f 100 -13 -4.98255 | gap 1, opp_overlap 184046 184045 184051 CTTGAACGACAAAAA CGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCG TTTTGCTTTTTATTC TERM 235 184051 - 184087 + F 100 -15.2 -4.86293 | gap 1, opp_overlap 184051, overlap 184046 184045 CTTGAACGACAAAAA CGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCG TTTTGCTTTTTATTC TERM 236 184573 - 184589 + G 70 -3.7 -4.64657 | ATTGTTACCGGTCGA TAGCG AACATAA CGCTA TTTTTCAGAGTTTAC yaeM 184124 - 185320 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 237 185425 - 185442 + F 100 -8.4 -6.02914 | TATAAGGTCAGGTAT GCCGTG GTTTTA CACGGC TTTTTTTTGTATAGG yaeS 185509 - 186267 + | undecaprenyl pyrophosphate synthase cdsA 186310 - 187137 + | CDP-diglyceride synthase yaeL 187149 - 188501 + | zinc metallopeptidase TERM 238 189040 - 189029 - g 70 -5.8 -4.18018 | CGTGTTGACCTAAAA CTGG TGTT CCAG GAAGGTGTGTCAGCT TERM 239 189736 - 189768 + G 71 -10.5 -2.8547 | opp_overlap 189740, overlap 189740 TGTCGATACCGATAC CCAACGTGTTCCGGG TAG CCCGGACCAGGTTGA TGTAGTCTACAAGGT TERM 240 189764 - 189740 - g 70 -9.9 -3.14026 | opp_overlap 189736 189740 GATACCGATACCCAA CGTGTTCCGGG TAG CCCGGACCAGG TTGATGTAGTCTACA TERM 241 189740 - 189764 + G 72 -9.9 -3.31269 | opp_overlap 189740, overlap 189736 GATACCGATACCCAA CGTGTTCCGGG TAG CCCGGACCAGG TTGATGTAGTCTACA yaeT 188531 - 190963 + | outer membrane protein assembly factor YaeT TERM 242 191062 - 191045 - f 71 -7.7 -3.96216 | overlap 191046 GGGCCACGCAAAGAA CTGCACC CTCC GGTGCAA ATGGGATGGTAAGGA TERM 243 191547 - 191519 - g 80 -11.8 -3.28712 | overlap 191505 191504 191535 CGCCGTTGCTTACAA CAGCAGCGATGT AAAAG ACATCACTGCCG ACGTACTGAAACAGG hlpA 191085 - 191570 + | periplasmic chaperone TERM 244 191652 - 191627 - g 82 -13.3 -2.97245 | opp_overlap 191625, overlap 191622 GGATGCAGAACTACA CGGTGATGGCG ATAT CGTCATCACCG GCGTTGCGTCCATGC lpxD 191610 - 192599 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 245 192626 - 192663 + G 95 -12.7 -4.07515 | overlap 192628 TTGTTCGCCAAACTT TACGGCCTGTCTCATTC TTAC GATTGCGGCAGGCCGTG TTATTATTGTCGTTT TERM 246 192628 - 192661 + G 93 -13.1 -3.60967 | overlap 192626 GTTCGCCAAACTTTA CGGCCTGTCTCATTC TTAC GATTGCGGCAGGCCG TGTTATTATTGTCGT fabZ 192611 - 193159 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 193163 - 193951 + | UDP-N-acetylglucosamine acyltransferase TERM 247 193985 - 194006 + G 95 -15.9 -2.78384 | TAACGATTGCCCTGG TCGCCGGAG AAAC CTCCGGCGA TATCCTGGGGGCCGG lpxB 193951 - 195099 + | lipid-A-disaccharide synthase TERM 248 195263 - 195252 - g 81 -7.2 -4.67011 | opp_overlap 195251 AAGCTGAGCGAAAAA CGCC GTCT GGCG CTCTATGAAGAGATC rnhB 195096 - 195692 + | ribonuclease HII dnaE 195828 - 199211 + | DNA polymerase III subunit alpha TERM 249 199377 - 199363 - g 74 -2.8 -5.00616 | GTCTGCGTGAAAAAA GCGT AGAACTG ACGC GTAAAATCTTCGCCG accA 199224 - 200183 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 250 200204 - 200221 + F 100 -9.1 -5.24129 | opp_overlap 200204 AAAAGTTCTGAAAAA GGGTCAC TTCG GTGGCCC TTTTTTATCGCCACG TERM 251 200221 - 200204 - f 80 -6.9 -4.61527 | opp_overlap 200204 AAAAGTTCTGAAAAA GGGTCAC TTCG GTGGCCC TTTTTTATCGCCACG ldcC 200282 - 202423 + | lysine decarboxylase 2 yaeR 202480 - 202869 + | hypothetical protein TERM 252 202889 - 202909 + T 83 -13.3 -3.24925 | TGTCATCGCCGCATT TGCCCGGTA ACG TGCCGGGCA TTGCTACTGTAAAAT TERM 253 203789 - 203807 + T 72 -8.8 -3.50832 | overlap 203788 GGAAGTGGCGCTGGC GCGGGAAG ATG CTTCCCCC TGTTTACGTTTGGGC TERM 254 204272 - 204240 - T 93 -12 -3.76952 | overlap 204260 CTTAGTTAAGTGAAA GCCGGATAAGACGC ATCAA ACGTCGCATCCGGC GAAAGTCAATCAGGA yaeO 204542 - 204282 - | Rho-binding antiterminator yaeP 204729 - 204529 - | hypothetical protein TERM 255 204566 - 204579 + g 84 -8.1 -4.65895 | ACCAGTAAGTTTGCC GCAGC GTAT GCTGC TTTTTCCCTGACAGC TERM 256 205190 - 205177 - g 78 -8.1 -4.34737 | opp_overlap 205186, overlap 205179 CGACGAATTAAGAAA GCCTG CACC CAGGC CGCAGAAGTGGCGCT yaeQ 204895 - 205440 + | hypothetical protein yaeJ 205437 - 205859 + | hypothetical protein cutF 205873 - 206583 + | lipoprotein involved with copper homeostasis and adhesion TERM 257 206683 - 206714 + T 87 -10 -4.36914 | opp_overlap 206693, overlap 206684 TAGCACGATTTTGTA GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA TTTTGTGCACGAGGC TERM 258 206684 - 206713 + T 83 -13.5 -3.21934 | opp_overlap 206693, overlap 206683 AGCACGATTTTGTAG GCCGGATAAGGCG TTTA CGCCGCATCCGGC ATTTTGTGCACGAGG yaeF 207571 - 206738 - | hypothetical protein TERM 259 207585 - 207605 + r 87 -11.1 -3.89346 | opp_overlap 207585 AATCCATGTAAAAAA GGGCCCTGA AAT TCAGGACCC TTTCTGGCATCAGCC TERM 260 207605 - 207585 - R 100 -13.3 -5.10497 | opp_overlap 207585 AATCCATGTAAAAAA GGGCCCTGA AAT TCAGGACCC TTTCTGGCATCAGCC proS 209333 - 207615 - | prolyl-tRNA synthetase TERM 261 209381 - 209363 - R 79 -11 -3.42056 | AGTTGGAAGGTAGAA CAGGCTCA AGG CGAGCCTG GGACAAAAAAAGTGA yaeB 210151 - 209444 - | hypothetical protein TERM 262 209998 - 210023 + g 83 -12.6 -3.28924 | gap 1 AATGGCTGAATGCTT CCAGGCCG-CG AACGG CGTCGGCCTGG TTGTAGGAAGCAATG TERM 263 210048 - 210060 + g 70 -4.7 -4.57073 | overlap 210049 GCAATGAGATGCAGT TCGCC GTT GGCGC TTTTTACCAGACCTG rcsF 210552 - 210148 - | outer membrane lipoprotein TERM 264 210416 - 210426 + g 74 -8.2 -3.92659 | overlap 210409 210420 ATTCGGACCGGCGTG GCGC GCG GCGC TTTCGGTTTTGCAGG TERM 265 210637 - 210609 - R 74 -6 -4.58663 | gap 1, opp_overlap 210610, overlap 210612 210615 AGGAGCTTGTAAAAA TGACAAGACGGGC AAGC GCCCGTCCTGA-A TGATATTACAAATTG TERM 266 210635 - 210612 - R 90 -14.6 -3.23975 | opp_overlap 210610, overlap 210609 210615 AGCTTGTAAAAATGA CAAGACGGGC AAGC GCCCGTCCTG AATGATATTACAAAT TERM 267 210632 - 210615 - R 93 -12.7 -3.75505 | opp_overlap 210610, overlap 210612 210609 TTGTAAAAATGACAA GACGGGC AAGC GCCCGTC CTGAATGATATTACA metQ 211485 - 210670 - | DL-methionine transporter substrate-binding subunit yaeE 212163 - 211525 - | DL-methionine transporter permease subunit TERM 268 212118 - 212107 - G 79 -2.2 -5.24449 | CACAAACCCAAAAAA TCCG GATA CGAA GGTCATTGCCAGCGT metN 213202 - 212171 - | DL-methionine transporter ATP-binding subunit TERM 269 212492 - 212502 + g 77 -8.2 -4.13767 | overlap 212500 CTGAATAAACTTCTG CGCC AGC GGCG TTTTCGGATGCGAGA yaeD 213390 - 213965 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 270 214116 - 214102 - f 86 -4.2 -5.47159 | opp_overlap 214102, overlap 214103 214110 GTTGAAGAGAAAAAA TCCTGA AAT TCAGGG TTGACTCTGAAATAG TERM 271 214115 - 214103 - f 71 -7.7 -3.87211 | opp_overlap 214102, overlap 214102 214110 TTGAAGAGAAAAAAT CCTGA AAT TCAGG GTTGACTCTGAAATA TERM 272 215940 - 215927 - f 75 -6.7 -4.41177 | overlap 215931 GATAGAAAGTGAAAA GCAAG GCGT CTTGC GAAGCAGACTGATAC TERM 273 216166 - 216142 - f 71 -8 -3.93061 | gap 1, opp_overlap 216149 AGCTGAAAATTGAAA CACTGAACAAC GAAA GTTGTTC-GTG AGTCTCTCAAATTTT TERM 274 216720 - 216708 - f 72 -6.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGCGA GGGG AGTGAAAAAGAACCT TERM 275 219209 - 219188 - f 74 -8.7 -3.91196 | CTGATACAGATTAAA TCAGAACGC AGAA GCGGTCTGA TAAAACAGAATTAGC TERM 276 220397 - 220368 - g 100 -10 -5.47159 | GCCGAAGATAAAAAA GCGATCGCCGCA CTGGAT TGCAACGACCGC CTGGTTAGCCCGGAA dkgB 219633 - 220436 + | 2,5-diketo-D-gluconate reductase B TERM 277 220464 - 220493 + T 89 -9.3 -4.59109 | opp_overlap 220465, overlap 220466 GCTCCTCCGGGAGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 278 220492 - 220465 - T 81 -12.8 -3.14132 | opp_overlap 220464 220466 CTCCTCCGGGAGTAA TGCCAGTCAGTT AAGC AACTGACTGGCT CTTTTTCGGGGCTGT TERM 279 220466 - 220491 + T 100 -16.3 -3.90762 | opp_overlap 220465, overlap 220464 TCCTCCGGGAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_0191 221821 - 220475 - | IS4 orf TERM 280 221839 - 221808 - G 100 -13.9 -4.4017 | opp_overlap 221811 CCAATGTGCATAAAA GAATCCGGAAACA AGTGAG CGTTTCCGGATTC TTACACAGCCACTGG TERM 281 221811 - 221836 + g 73 -9.1 -3.61398 | opp_overlap 221808 ATGTGCATAAAAGAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC yafC 222785 - 221871 - | putative transcriptional regulator LYSR-type TERM 282 222996 - 222977 - H 82 -11.4 -3.55173 | opp_overlap 222961 ACTATAACAGTAGAA CCCTCCCG AGTG CGGAAGGG TTGACGTAATAGAGG TERM 283 223092 - 223068 - g 72 -9.9 -3.28924 | opp_overlap 223067 223063 TATGTTGCCGGACAA CCTGCGGAAAG GAT CTTACCGCCGG GGTCTTTTGCGAGCA TERM 284 223691 - 223714 + G 82 -3.1 -5.18371 | overlap 223685 223686 223689 223691 CGATGATCAGCGCCG TCGGGCG TTTGGCCGCC CGCTCGA TTTTGTTTTCTACCG yafD 223026 - 223826 + | hypothetical protein TERM 285 223847 - 223872 + F 70 -4.7 -4.46212 | gap 1, opp_overlap 223831 223858 223859, overlap 223832 223831 GTCAGGTCTGCCACA GGGCAG-ACCAA CGT TTGGCGCTGTCC TTTTATACTCAAACA yafE 223904 - 224674 + | putative biotin synthesis protein TERM 286 224683 - 224703 + T 79 -4.6 -5.25699 | opp_overlap 224683 GGCATAAATAAAAAA GGCACCGG GGGAA TCGGTACC TTTTTATTATCTGGT TERM 287 224703 - 224683 - T 93 -6.1 -5.72622 | opp_overlap 224683 GGCATAAATAAAAAA GGCACCG GGGGAAT CGGTACC TTTTTATTATCTGGT dniR 226080 - 224722 - | membrane-bound lytic murein transglycosylase D TERM 288 225421 - 225458 + g 72 -5.6 -4.45664 | gap 1, opp_overlap 225430, overlap 225430 CTGCGGCAACGGTAA CGACCAGAAGTCCGTGG ATTTC CCACGCGCTT-TGTTCG TTTTAATTGCCTTCA TERM 289 225430 - 225450 + g 70 -4.6 -4.46669 | opp_overlap 225430, overlap 225421 CGGTAACGACCAGAA GTCCGTGG ATTTC CCACGCGC TTTGTTCGTTTTAAT gloB 226907 - 226152 - | hydroxyacylglutathione hydrolase TERM 290 226533 - 226521 - G 77 -6.9 -4.48072 | ACACCCACCAGAAAA CAGCG TGT CGCCG CAAAATAGATAAGGT yafS 226941 - 227663 + | hypothetical protein rnhA 228238 - 227660 - | ribonuclease H dnaQ 228183 - 228923 + | DNA polymerase III subunit epsilon TERM 291 229138 - 229175 + Tr 95 -11.6 -4.26903 | gap 2, opp_overlap 229144, overlap 229139 229144 CGTTCCGCCAATATT C-A-GAAAGCCCGAATCA GTAA TGATTCGGGCTTTCGTCG TTTTGGTGAAGTGAG TERM 292 229139 - 229172 + Tr 100 -16.9 -3.13772 | opp_overlap 229144, overlap 229138 229144 GTTCCGCCAATATTC AGAAAGCCCGAATCA GTAA TGATTCGGGCTTTCG TCGTTTTGGTGAAGT TERM 293 229144 - 229167 + Tr 100 -15.4 -3.93659 | opp_overlap 229144, overlap 229139 229138 GCCAATATTCAGAAA GCCCGAATCA GTAA TGATTCGGGC TTTCGTCGTTTTGGT TERM 294 229167 - 229144 - TR 100 -15.4 -3.9777 | opp_overlap 229144 229139 229138 GCCAATATTCAGAAA GCCCGAATCA GTAA TGATTCGGGC TTTCGTCGTTTTGGT TERM 295 229256 - 229231 - TR 100 -9.9 -5.11613 | gap 1, opp_overlap 229231 229230 ATATGATTTAAAAAA TGGCCAGACATT ATA AAT-TCTGGCCA CTTCTGTTACTCCAG safA 230309 - 229263 - | putative cytoplasmic protein SFV_0202 230832 - 230320 - | hypothetical protein safB 231304 - 230987 - | periplasmic chaperone of fimbral assembly machinery TERM 296 231353 - 231371 + r 73 -11 -2.62184 | GTCATAATTTTGCCG CGCTGCAT GCT GTGCAGCG TCATCTGCGAGAAGG TERM 297 231712 - 231683 - R 77 -7.2 -4.53034 | gap 1, overlap 231689 GGCAGATAATTAAAA GATAAC-TGGCGG ATCAA CCGCCATGCCATC TCACGTTCAGCCAGC TERM 298 231997 - 231979 - R 79 -11.6 -3.28712 | GGCGTTTTCTGATAA GCGGCGGG GCT CCCGGCGC AGGGAAAAATAACGT TERM 299 232731 - 232751 + r 78 -11.8 -3.08679 | overlap 232733 GCAGGCATATCCGGT GGCGCGGC GGTCA GTCGCGCC TCTTCGATGGCGAGC SFV_0205 233694 - 233200 - | putative cytoplasmic protein sat1 234521 - 233889 - | putative cytoplasmic protein sat2 234885 - 234508 - | putative cytoplasmic protein SFV_0208 235520 - 235885 + | insertion sequence 2 OrfA protein SFV_0209 235909 - 236748 + | IS2 ORF2 SFV_0210 237323 - 236805 - | hypothetical protein TERM 300 237136 - 237119 - G 100 -10.5 -5.06414 | TTGTTGCAATAAAAA GCCCCGC GAAT GCGAGGC TAAATCCTGGTGTTT SFV_0211 237778 - 237311 - | endopeptidase SFV_0212 238308 - 237775 - | putative lysozyme SFV_0213 238934 - 238374 - | hypothetical protein TERM 301 238875 - 238898 + g 81 -6 -4.77698 | gap 1, opp_overlap 238875 238874 GCAGTAATCGTAAAT CGCCGC-ATAA TGC TCATCGCGGCG TTTGTTTTCATCTTC TERM 302 238974 - 238988 + r 74 -7.2 -4.29227 | overlap 238969 CATTTTCCAGGTGAT TGAATC GCT GATTCA TTTCTTCATGCTTCA SFV_0214 239223 - 239008 - | hypothetical protein TERM 303 239165 - 239155 - G 72 -4.6 -4.64598 | opp_overlap 239158, overlap 239143 239156 239158 239159 CAACCACTGCAAAAA CCAG TAG CCGG CACTGCCGGCGGAGG TERM 304 239307 - 239294 - R 100 -9.5 -5.46706 | ATTTGAAAAGAAAAA CCCGC AAAA GCGGG CGAAACGATATATAC SFV_0215 241117 - 239978 - | hypothetical protein SFV_0216 241629 - 241219 - | hypothetical protein SFV_0217 242362 - 242664 + | IS911 ORF1 TERM 305 243123 - 243112 - g 77 -5.8 -4.63218 | opp_overlap 243117 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SFV_0218 242965 - 243531 + | IS911 ORF2 TERM 306 244530 - 244516 - g 70 -5 -4.56597 | GCCGCTTCGCAAAAA TGATGC GCG ACATCA AAAAACCAAAAGAGA SFV_0219 243525 - 244589 + | putative terminase large subunit TERM 307 244917 - 244903 - g 70 -10 -3.22102 | overlap 244901 ATATGCGCCATAACA CGGCAA AGA TTGCCG TTAACGTTGGCGTTC SFV_0220 244590 - 246755 + | putative packaging glycoprotein TERM 308 247452 - 247433 - g 81 -8.6 -4.4017 | gap 1, overlap 247435 CTAATCCTGAGAAAA CA-CGCCAG TTG CTGGCGATG GACGGGCAATCCGCG TERM 309 247449 - 247435 - g 88 -11.4 -3.80535 | overlap 247433 AATCCTGAGAAAACA CGCCAG TTG CTGGCG ATGGACGGGCAATCC SFV_0221 246769 - 247680 + | putative scaffolding protein TERM 310 247765 - 247745 - g 72 -9.7 -3.32294 | overlap 247736 247746 CGAAACCGTCCAGAA CCTGACGCC AAT GGCGTCAAA AGTGACAAAATACAC TERM 311 248685 - 248649 - g 72 -6 -4.42386 | gap 1, opp_overlap 248652, overlap 248652 GCGTCACTGACAAAA GAAGAGAAG-GCTTACG CTAA CGTAAACACCTCTCTTG CTGATACCACTCCGG TERM 312 248682 - 248652 - g 78 -7.7 -4.33182 | gap 1, opp_overlap 248652, overlap 248649 TCACTGACAAAAGAA GAGAAG-GCTTACG CTAA CGTAAACACCTCTC TTGCTGATACCACTC SFV_0222 247680 - 248975 + | putative coat protein TERM 313 248983 - 249000 + G 86 -6.9 -4.96848 | opp_overlap 248984, overlap 248984 CCGCGTGATAACCAG AGGGAGC TTCG GCTCCCG TTTTTATCTGGAGAC TERM 314 248984 - 248999 + G 77 -10.4 -3.57627 | opp_overlap 248984, overlap 248983 CGCGTGATAACCAGA GGGAGC TTCG GCTCCC GTTTTTATCTGGAGA SFV_0223 248972 - 249244 + | hypothetical protein SFV_0224 249222 - 249722 + | putative DNA stabilization protein TERM 315 250923 - 250947 + G 79 -4.1 -5.03994 | overlap 250921 GTTGAATCGTCAACT GGCGTTGCGCA GTA TGCTGACCGCC TTTTTCTCTCTGCAA SFV_0225 249723 - 251141 + | putative packaged DNA stabilization protein SFV_0226 251141 - 251989 + | putative packaged DNA stabilization protein SFV_0227 251989 - 252444 + | putative head assembly protein TERM 316 252741 - 252729 - g 72 -7.7 -3.99324 | TCTCAGCAGTATAAA GACCT TGC AGGTC AGGCTCGTTACCAGA SFV_0228 252447 - 253139 + | putative DNA transfer protein SFV_0229 253149 - 254480 + | putative prophage DNA injection protein TERM 317 255621 - 255601 - g 76 -7.6 -4.1891 | CTGCGCCAACAGAAA CATCACCA TTCTC CGGTGATG CCGCTGCAGCAACAA TERM 318 256125 - 256111 - g 81 -7.2 -4.59773 | CTGCAGGTGCAAAAA TTGATG CGC CATCAA CAAGGTCAATGCTCA SFV_0230 254481 - 256211 + | putative DNA transfer protein SFV_0231 256337 - 256663 + | IS629 ORF1 TERM 319 256983 - 256971 - g 70 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SFV_0232 256663 - 257550 + | IS629 ORF2 SFV_0233 258033 - 257596 - | IS600 ORF2 SFV_0234 258371 - 258069 - | IS600 ORF1 SFV_0235 258523 - 258855 + | putative terminase TERM 320 258885 - 258912 + G 76 -7.6 -4.27617 | ATCATGCTGATTCTC GCGCCTCTGGTG GGCG TGCTGGGGGCGC TTTTGCTGGCGTATG TERM 321 258946 - 258956 + G 85 -8.2 -4.44667 | CCTGGCTGATTTATC CCCC GGC GGGG TTTGTTGTTGCCGGG ymfR 258867 - 259049 + | hypothetical protein TERM 322 259159 - 259190 + G 74 -2.2 -5.1675 | gap 1, opp_overlap 259161, overlap 259161 TACCGGAAAGCAGAT CAGCAGTCAG-CG AGCCATG CGACTGACGGCGG TTTTTTCCTGCGTCA SFV_0237 259049 - 260290 + | putative portal protein TERM 323 260582 - 260601 + G 100 -13.6 -4.21607 | opp_overlap 260582 ACATGCACACATGAA GGCCGGTT CGTT AACCGGCC TTTCTATTGGGTACG TERM 324 260601 - 260582 - g 95 -13.6 -3.33261 | opp_overlap 260582 ACATGCACACATGAA GGCCGGTT CGTT AACCGGCC TTTCTATTGGGTACG TERM 325 260813 - 260779 - g 100 -2.7 -5.80817 | overlap 260780 260785 CCGAACAGAAAAAAA TCGAAAGAGTCCTGC GTGAT GTCGGACTCTCCCGT ACCCAGGCCAAAGCA SFV_0238 260268 - 260918 + | putative prohead protease TERM 326 261055 - 261044 - g 81 -5.8 -4.77438 | overlap 261050 ATTGAGCAGGAAAAA GGCA AACT TGCC GGGCAGGTGGAAACC TERM 327 261724 - 261748 + G 73 -11.3 -2.59039 | overlap 261723 TATTGTATCCGGCGA CGCGACTGCGG TGA CCGCAGACGCC ATTATCAAACTGATT SFV_0239 260933 - 262138 + | putative bacteriophage protein TERM 328 262144 - 262168 + F 90 -13.6 -3.30124 | gap 1, opp_overlap 262142, overlap 262146 AGCGGCGTAATCATT CAG-GGGCGCG GAAC CGCGCCCCCTG TTCTGACGGGTGAAG TERM 329 262146 - 262165 + F 95 -16.4 -2.5294 | opp_overlap 262142, overlap 262144 CGGCGTAATCATTCA GGGGCGCG GAAC CGCGCCCC CTGTTCTGACGGGTG SFV_0240 262188 - 262388 + | putative bacteriophage protein SFV_0241 262391 - 262714 + | putative bacteriophage protein SFV_0242 262711 - 263121 + | putative bacteriophage protein TERM 330 263155 - 263173 + G 78 -9.5 -3.89881 | GATGCGCTTTAACCG CGCCCGT GTCCG GCGGGCG TTTGTCACGATTGGT SFV_0243 263096 - 263602 + | putative bacteriophage protein TERM 331 263779 - 263762 - g 84 -4.1 -5.18371 | CGGGAGAAAACAAAA GCCAG ACCGACTA CTGGC AGGAGCTGAAAGAGG SFV_0244 263599 - 264159 + | putative bacteriophage protein SFV_0245 264322 - 265818 + | putative sheath protein TERM 332 265878 - 265856 - g 73 -11.3 -2.75577 | overlap 265853 265852 TTATTTCAAAATTGA CGGTCAGCA GCTAT CGCTGACCG GCGGCATTGAGGTGC TERM 333 266040 - 266020 - g 72 -4.7 -4.63218 | opp_overlap 266009 TTCCGGTGAACAAAA TCACCTCGT CTG ATGAGATGA CAATCACTGCCGAGT SFV_0246 265818 - 266174 + | hypothetical protein SFV_0247 266174 - 266443 + | bacteriophage protein TERM 334 266476 - 266494 + F 93 -14.6 -3.33037 | GATCGCTTCTTTGAC TGCGCCAG CTA CTGGCGCA TTAATCCTTTCGAAT TERM 335 267017 - 267003 - g 88 -2.1 -5.55698 | gap 1 TACAACTGAAAAAAA CA-CCG GAAG CGGCTG CTGAGTTTGCTGCAA SFV_0248 266585 - 268420 + | putative tail protein TERM 336 268444 - 268459 + F 100 -9 -5.36441 | opp_overlap 268443 TAATCTGTTAATGAG TCCCAC TCCG GTGGGA TTTTTTATGTACGGA TERM 337 269279 - 269265 - g 70 -5.6 -4.37534 | overlap 269266 269268 AAACGGACAGTAAAA CCACCG CCA CGGCGA CGCAGCAGCGTAACA TERM 338 269569 - 269581 + G 78 -9.1 -3.87815 | opp_overlap 269568 269569 GTTGTCCCGTACAAC CAGCG ATG CGCTG TTTCTGGCGCTGCGC SFV_0249 268481 - 269809 + | tail/DNA circulation protein SFV_0250 269806 - 270885 + | tail protein SFV_0251 270885 - 271433 + | tail protein SFV_0252 271433 - 271858 + | tail protein TERM 339 271972 - 271994 + G 70 -10.6 -2.79968 | opp_overlap 271971, overlap 271971 ACGTGCGGGCAAAGG TGTATGCGGC GGC GCTGCATACG GTTTACGGTTACATC SFV_0253 271845 - 272903 + | hypothetical protein TERM 340 273443 - 273458 + G 70 -4 -4.70659 | AACAAACTCTGCCCG TCGCAT ACCT ATGTGA TTTTTAAATATCCGG SFV_0254 272894 - 273478 + | hypothetical protein TERM 341 273530 - 273504 - f 72 -5.8 -4.41353 | overlap 273496 GTATAGACACGAAAA CCGCGCAAAA GGATAAG TTCGGCGCGG GTAAGAACGGTTTTA TERM 342 274381 - 274365 - g 73 -3.7 -4.81843 | AATAATGAAAAGAAA TCTGC ACTGATA GCAGA GGCAACGAATGTAAT SFV_0255 274041 - 274544 + | putative phage tail fibre protein TERM 343 274592 - 274615 + T 72 -6.6 -4.24342 | overlap 274594 AATTATAACTGCAGA TGCCCCCCTA AGTT TCGGGGGGGA TTTATTGATGCAAAA gtrV 275920 - 274667 - | serotype-specific glucosyl transferase gtrB 276840 - 275917 - | putative bactoprenol glucosyl transferase gtra 277199 - 276837 - | bactoprenol-linked glucose translocase SFV_0259 278621 - 277461 - | putative integrase TERM 344 278454 - 278472 + g 88 -5.2 -5.21709 | overlap 278456 TTCCTTGAATAGCTT TTTCGGTG ATT CCCCGAGA TTTTTTACTCTCCAC TERM 345 278817 - 278832 + r 75 -6.2 -4.45068 | AGATACGACGCTGCC TCTTCA CGAG TGAAGA TTTCTTCTTCCACCT TERM 346 279314 - 279301 - R 100 -9.5 -5.4505 | opp_overlap 279299 279305, overlap 279303 GTCTCCAATAAAAAA CCGCC ATCA GGCGG CATGGTGTTCTTTCA TERM 347 279510 - 279497 - R 82 -5.9 -5.18371 | CTCCATAAAACAAAA CCCGC CGTA GCGAG TTCAGATAAAAGAAA TERM 348 279543 - 279526 - R 93 -9.1 -4.83243 | opp_overlap 279526 TTCAGATAAAAGAAA TCCCCGC GAGT GCGAGGA TTGTTAGTTGCTATC SFV_0260 280501 - 279662 - | putative bacteriophage protein SFV_0261 281159 - 280503 - | putative bacteriophage protein TERM 349 281074 - 281084 + g 70 -6.8 -4.0641 | opp_overlap 281068 281065, overlap 281067 281066 TCATAACCACGTGCG CCAC GGT GTGG TTTATATGAGTCCCA SFV_0262 281463 - 281146 - | hypothetical protein SFV_0263 281922 - 281566 - | putative bacteriophage protein SFV_0264 282908 - 282426 - | hypothetical protein SFV_0265 283794 - 282892 - | putative phage-related DNA recombination protein SFV_0266 284099 - 283791 - | hypothetical protein TERM 350 284120 - 284132 + r 71 -3.4 -4.75472 | TTCTCCTGTTCTTTG TGCT GATTG AGCA TTTTGTTCATCTGAC SFV_0267 284493 - 284251 - | putative IS1 encoded protein insB 284568 - 285071 + | IS1 ORF2 TERM 351 285181 - 285166 - T 77 -6.8 -4.49389 | opp_overlap 285166 ATTGCATAACGAAAA CGCCTC GAGT GAAGCG TTATTGGTATGCATA TERM 352 285222 - 285203 - T 78 -4.9 -4.99035 | overlap 285204 GTATGCATATAAAAA GGCCCTC ACATTG GAGGGCA AAGAAGATTTCCAAT TERM 353 285275 - 285320 + T 100 -12.7 -4.53119 | TTTAGTTACGAGCGA CATTGCTCCGTGTATTCACTC GTTG GAATGAATACACAGTGCAGTG TTTATTCTGTTATTT TERM 354 285912 - 285924 + T 73 -4.1 -4.80167 | overlap 285893 AGAATCGGTATTCCT CATGT GTG GCATG TTTTCGTTTTTGCTC SFV_0269 286631 - 286308 - | putative bacteriophage protein TERM 355 287008 - 287031 + r 83 -4.6 -5.43414 | TTGCATACCTGGGAT GTTCATTACT TTGG AGTAAAGAGC TTTTTTGTCTGTAGT SFV_0270 287969 - 287337 - | putative prophage repressor CI TERM 356 287907 - 287938 + g 73 -3.7 -4.77757 | opp_overlap 287909, overlap 287910 CCCCACCTTTTGAGC AAGTTCAGCCTGG TTAAGT CCAAGCTGAATTC TTTTGCTTTTTACCC TERM 357 287910 - 287935 + g 82 -7.6 -4.47007 | opp_overlap 287909, overlap 287907 CACCTTTTGAGCAAG TTCAGCCTGG TTAAGT CCAAGCTGAA TTCTTTTGCTTTTTA TERM 358 288358 - 288387 + r 89 -9.3 -4.59109 | opp_overlap 288359 288360, overlap 288360 CACCTATGGTGTATA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 359 288386 - 288359 - R 85 -12.8 -3.30243 | opp_overlap 288358 288360, overlap 288360 ACCTATGGTGTATAA TGCCAGTCAGTT AAGC AACTGACTGGCT CTTTTTCGGGGCTGT TERM 360 288385 - 288360 - R 90 -16.3 -2.57931 | opp_overlap 288358 288360, overlap 288359 CCTATGGTGTATAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG TERM 361 288360 - 288385 + r 100 -16.3 -3.90762 | opp_overlap 288360 288359, overlap 288358 CCTATGGTGTATAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_0271 289715 - 288369 - | IS4 orf TERM 362 289733 - 289702 - G 100 -13.9 -4.4017 | opp_overlap 289705 CCAATGTGCATAAAA GAATCCGGAAACA AGTGAG CGTTTCCGGATTC TTACACAGCCACTGG TERM 363 289705 - 289730 + g 73 -9.1 -3.61398 | opp_overlap 289702 ATGTGCATAAAAGAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 364 290121 - 290093 - H 100 -11.8 -5.54907 | opp_overlap 290092 CTGACAAAAGAAAAA GCCCCGAAGAAC GGCGA ATTCTTCGAGGC CTAATGTAGAAAGAC TERM 365 290246 - 290274 + H 78 -12.5 -2.61144 | opp_overlap 290249 290252, overlap 290249 290252 GGTAGCCGCAGCAAA TAACAGGGCGTTC GCA GAGCGCCTTGTTG GTGTTTACAGACTAG TERM 366 290249 - 290271 + H 82 -12 -3.45571 | opp_overlap 290249 290252, overlap 290246 290252 AGCCGCAGCAAATAA CAGGGCGTTC GCA GAGCGCCTTG TTGGTGTTTACAGAC TERM 367 290271 - 290249 - H 71 -7.6 -4.0031 | opp_overlap 290249 290246 290252, overlap 290252 AGCCGCAGCAAATAA CAGGGCGTTC GCA GAGCGCCTTG TTGGTGTTTACAGAC TERM 368 290252 - 290268 + H 80 -10.1 -3.8613 | opp_overlap 290249 290252, overlap 290249 290246 CGCAGCAAATAACAG GGCGTTC GCA GAGCGCC TTGTTGGTGTTTACA TERM 369 290767 - 290744 - g 81 -11.2 -3.70926 | overlap 290742 ATAATATAAATAATA TCTCTAATAC TGAC GTATTAGAGA GTGCCACAGCAGACA TERM 370 290913 - 290895 - g 72 -4.5 -4.6902 | TGACAAGCGTAAAAA CCAGATC CGAAC GTTCTGG CGCAAAGCCGGAGTG SFV_0272 290308 - 291132 + | replication protein O TERM 371 291356 - 291378 + G 70 -4.8 -4.53034 | overlap 291349 291357 GAACTGGAGCGTAAA TCGTTAACGG CTT CTGTTGGCGG TTTTGCTTATATCGC SFV_0273 291122 - 292558 + | replication protein P TERM 372 292588 - 292609 + F 100 -12.3 -5.27335 | opp_overlap 292588 ACTGAGCTTGTAACA GGCCTGCTG GTAA TAGCAGGCC TTTTTATTTGGGGGA TERM 373 292609 - 292588 - f 78 -11.6 -3.03243 | opp_overlap 292588 ACTGAGCTTGTAACA GGCCTGCT GGTAAT AGCAGGCC TTTTTATTTGGGGGA SFV_0274 293591 - 293821 + | hypothetical protein TERM 374 294146 - 294133 - g 70 -3.8 -4.66953 | opp_overlap 294143 TTAATATCCCAAAAA CGCT ACCAGA AGCG TTGCGCCTTGCTGCT TERM 375 294203 - 294181 - g 70 -4.9 -4.46212 | gap 1, overlap 294186 TTGCTGAGCAGAAAA TGCAA-CTGG AAAA CCAGCTCGCA ATTGCCGCACCTAAA SFV_0275 293814 - 294536 + | putative DNA-binding protein Roi of bacteriophage BP-933W SFV_0276 294823 - 295185 + | putative crossover junction endodeoxyribonuclease TERM 376 295434 - 295407 - g 100 -12.8 -4.58395 | gap 1 TTCATTCGCCAAAAA GCCCGATGATGAG CGA CTCACCA-CGGGC TACGGCTTCTGACTC SFV_0277 295367 - 295990 + | putative antitermination protein TERM 377 296070 - 296050 - f 76 -8.3 -4.1552 | opp_overlap 296061 296065, overlap 296061 GACTTTTTGAATAAA GTTGGGTAA ATT TGACCCAAC GATGGGTTAATTCGC TERM 378 296204 - 296254 + F 90 -7 -5.4492 | gap 1, opp_overlap 296204 GTCTGCAAAATGCAA TCCCGAAACAGTT-CGCAGGT AATAGTTAGA GCCTGCATAACGGTTTCGGGA TTTTTTATATCTGTG TERM 379 296503 - 296534 + F 89 -10.9 -4.11692 | opp_overlap 296511, overlap 296504 CTTCGTGAAAGCGGG TGGCAAGAGGTTG CGCTAA CAACCTCCTGCCG TTTTGCCCGTGCATA TERM 380 296504 - 296533 + F 80 -12.2 -3.06694 | opp_overlap 296511, overlap 296503 TTCGTGAAAGCGGGT GGCAAGAGGTTG CGCTAA CAACCTCCTGCC GTTTTGCCCGTGCAT SFV_0278 296659 - 296982 + | cell lysis protein SFV_0279 296966 - 297292 + | putative endolysin SFV_0280 297440 - 297877 + | putative endopeptidase TERM 381 297910 - 297926 + F 74 -5.7 -4.62783 | opp_overlap 297910 AAGTCCATTTAATGA GCCTCAC GAT GCGGGGC TTTTTGCAATAAATG TERM 382 297938 - 297957 + F 70 -2.1 -5.00616 | opp_overlap 297940 297941, overlap 297940 GGGCTTTTTGCAATA AATGCGT ACCGCA ACGCATG TTTTTTACACCGAAC TERM 383 297950 - 297940 - f 71 -6.8 -4.15044 | opp_overlap 297938 297940, overlap 297941 GCTTTTTGCAATAAA TGCG TAC CGCA ACGCATGTTTTTTAC TERM 384 298291 - 298260 - g 76 -9.6 -3.74238 | opp_overlap 298269 GGAAAGAATCTCAAA TTTTACATCCCTCA CAAT CGAGGTATGTAAAA ACCAGCAAGGCACGA SFV_0281 298079 - 298600 + | putative bacteriophage protein TERM 385 299017 - 299038 + F 79 -8.8 -4.09864 | opp_overlap 299033 GCTTATACCCTACAC GGGATATC TTAACT GATATCCC TTTTAACGGATAAAT SFV_0282 299117 - 299419 + | IS600 ORF1 SFV_0283 299560 - 300273 + | IS600 ORF2 TERM 386 300819 - 300873 + T 88 -8.4 -4.86731 | opp_overlap 300807 300819 CAAGGTTAAAACTAA CCGGGCGATGCGTCAATGGCCTTGTG AAT CAAATGGCTACTTTTGCATCACCCGG TTTTATTTACGCACG TERM 387 300873 - 300819 - T 72 -8.4 -3.69437 | opp_overlap 300819, overlap 300807 CAAGGTTAAAACTAA CCGGGCGATGCGTCAATGGCCTTGTG AAT CAAATGGCTACTTTTGCATCACCCGG TTTTATTTACGCACG proA 302133 - 300880 - | gamma-glutamyl phosphate reductase proB 303248 - 302145 - | gamma-glutamyl kinase insB 303942 - 303439 - | IS1 ORF2 SFV_0288 304017 - 304211 + | putative IS1 encoded protein TERM 388 304605 - 304595 - g 79 -2.4 -5.21709 | CTGCACAGCAAAAAA CGCG TCT CGCT TTTGCCGGGTTGAAA TERM 389 304770 - 304750 - g 76 -9 -3.79519 | gap 1 AACTTTATGACCAAA CG-CGCCAG CGGT CTGGCGACG TATCGGAACACCGAC phoE 304312 - 305367 + | outer membrane phosphoporin protein E TERM 390 305374 - 305398 + T 72 -10.7 -2.78679 | opp_overlap 305372 305374 305375, overlap 305374 CAGTTTTAATGAATA TTGCCGGATGT GAT GCATCCGGCAC ATTTCACTCACGCCG TERM 391 305374 - 305399 + T 72 -9.1 -3.64822 | gap 1, opp_overlap 305372 305374 305375, overlap 305374 CAGTTTTAATGAATA T-TGCCGGATGT GAT GCATCCGGCACA TTTCACTCACGCCGT TERM 392 305398 - 305374 - T 71 -10 -3.24329 | opp_overlap 305374 305374, overlap 305372 305375 CAGTTTTAATGAATA TTGCCGGATG TGATG CATCCGGCAC ATTTCACTCACGCCG TERM 393 305397 - 305375 - T 80 -13.5 -2.54276 | opp_overlap 305374 305374, overlap 305374 305372 AGTTTTAATGAATAT TGCCGGATG TGATG CATCCGGCA CATTTCACTCACGCC crl 305807 - 305406 - | DNA-binding transcriptional regulator Crl frsA 307109 - 305865 - | fermentation/respiration switch protein TERM 394 306584 - 306561 - G 72 -4.4 -4.70659 | overlap 306562 CGGCATATGCAAAAA GCCGGTGATG GGCG CACCGCCGGG TACGGTAAACTCCAT TERM 395 307197 - 307167 - R 84 -7.4 -4.74103 | overlap 307170 GCCTGAAGTTAAAAA GAACAACGCCCGGC AAT GCCAGGCGTTGAAA AGATTAGCGACCGGA TERM 396 307194 - 307170 - R 100 -17.9 -4.47888 | overlap 307167 TGAAGTTAAAAAGAA CAACGCCCGGC AAT GCCAGGCGTTG AAAAGATTAGCGACC gpt 307659 - 307201 - | xanthine-guanine phosphoribosyltransferase TERM 397 307940 - 307963 + G 90 -9 -4.57837 | gap 1, opp_overlap 307942 CTGAACTGTCTCAAT TATCTCCACAG CCG CTGTGG-GATA TTTTTGCCAAAATCT TERM 398 308323 - 308313 - g 72 -6.8 -4.25104 | TCTGGCTGACGAAAA CGTG GTT CACG GCCCGCTGGAAGTGC TERM 399 309259 - 309238 - g 71 -2.2 -5.00616 | opp_overlap 309238 GGTCTGTTCAAAAAA CCGTATCC GGAAAT GGACATGG TTTCTATCGGGCCAA pepD 307921 - 309378 + | aminoacyl-histidine dipeptidase (peptidase D) TERM 400 309391 - 309422 + T 100 -17.3 -3.86776 | TAATTATTTGATTTG CTGCCGGATGGCG TTTAAT CGCCTTCCGGCAG TTTCATCCTTCATTA SFV_0295 311181 - 310111 - | hypothetical protein TERM 401 311184 - 311210 + r 79 -10.3 -3.63515 | opp_overlap 311174 ATAGACTCGTCATAC TTCAAGTTGCA TGTGC TGCGACTTGAA TTATTGAGAGTAACA yafP 311852 - 311400 - | hypothetical protein yafO 312260 - 311862 - | putative toxin YafO yafN 312556 - 312263 - | putative antitoxin of the YafO-YafN toxin-antitoxin system TERM 402 312366 - 312377 + g 76 -3.6 -4.9934 | CTTGGACGAAAGCGC GCCT TTAT GGGC TTTTTCTCCTCTTGT dinP 313612 - 312608 - | DNA polymerase IV mbhA 314519 - 313734 - | hypothetical protein fhiA 314464 - 316203 + | flagellar biosynthetic protein FlhA yafM 316917 - 316420 - | hypothetical protein yafL 317647 - 317093 - | putative lipoprotein yafK 317998 - 318738 + | hypothetical protein yafJ 319476 - 318709 - | putative amidotransferase TERM 403 318749 - 318770 + g 74 -8.7 -3.91084 | opp_overlap 318740, overlap 318741 AATAAGCGCCATTCG CCTGGCATA ATTT TTTGCCAGG TTTCATTGCCCGTCA TERM 404 319671 - 319639 - R 73 -9.8 -3.34043 | gap 1, opp_overlap 319607 319650 319665, overlap 319607 319640 GGCATCAGCGCACAA GTGCCGGATGCGGCG TAAA CGCCTTATCCGGC-C TACGCCAGACTTACT gmhA 320422 - 319682 - | phosphoheptose isomerase TERM 405 320023 - 320042 + g 74 -7.8 -4.11216 | gap 1, opp_overlap 320023 320024, overlap 320024 CGTCAGAAATAGCAA TCG-CCGGG TAG CCCGGACGG TTTTCACGGTAGCGA TERM 406 320851 - 320832 - g 70 -4.2 -4.62069 | overlap 320844 GCCGGACTGGAAAAA GCTGCATA ACTA TCCGCAGC CGCGCCTGACCGCTG TERM 407 321466 - 321452 - g 73 -11.4 -2.73364 | opp_overlap 321450 CGCTGATCCCAACCA CCACGC CGG GCGTGG AAATTGGTCGTCGCC fadE 320500 - 322944 + | acyl-CoA dehydrogenase TERM 408 322970 - 322953 - T 93 -12.7 -3.73068 | opp_overlap 322953 CGCGTAATTGAATAA CGGAGCC GAAA GGCTCCG TTTCTTTATCCGCTA TERM 409 322953 - 322970 + T 100 -12.7 -4.56367 | opp_overlap 322953 CGCGTAATTGAATAA CGGAGCC GAAA GGCTCCG TTTCTTTATCCGCTA ykfE 323460 - 322987 - | vertebrate C-lysozyme inhibitor TERM 410 323904 - 323924 + G 74 -3.1 -4.91109 | overlap 323908 CCGCTTTTTGCTGGT TGAGCCGGG CGG CACGGTACA TTTTTATGATAAGCG yafV 323617 - 324387 + | hypothetical protein TERM 411 324768 - 324740 - T 83 -4.5 -5.38549 | opp_overlap 324741 324765, overlap 324741 GTTAAATAATAAAAA GCCGGAAAGATCT GGA AGAAATTTCCGGT TATTATCGTTGCTAT TERM 412 324741 - 324767 + T 71 -8 -3.90241 | opp_overlap 324740 324741, overlap 324765 TTAAATAATAAAAAG CCGGAAAGATCT GGA AGAAATTTCCGG TTATTATCGTTGCTA SFV_0310 326230 - 325436 - | putative Rhs-family protein SFV_0311 328734 - 326422 - | putative Rhs-family protein TERM 413 326694 - 326710 + g 71 -9.3 -3.48024 | overlap 326679 326695 326699 TATCGGTGGGATTGC CCAGCGC ATC GCGCCGG TATTTGATACTGCCG TERM 414 328282 - 328270 - G 86 -10.5 -3.88001 | CTCCATAAAAAGTAA CGGCG CGA CGCCG TGGTCATCAAATTCA SFV_0312 329303 - 328896 - | putative Rhs-family protein SFV_0313 329771 - 329325 - | putative cytoplasmic protein TERM 415 329413 - 329392 - G 81 -8.7 -4.30576 | opp_overlap 329392, overlap 329393 GTGTGATCATCAAAA GGACGCTGA GTGG TCAGCGTCA ACATTAGTACCTTTG TERM 416 329412 - 329393 - G 81 -12.2 -3.18024 | opp_overlap 329392, overlap 329392 TGTGATCATCAAAAG GACGCTGA GTGG TCAGCGTC AACATTAGTACCTTT TERM 417 329755 - 329722 - G 81 -6.9 -4.71426 | overlap 329724 GTGCGATCAAGAAAA GT-TTCAGGCAGGGC AAAGCA GCCCT-CCTGAATAC GGTAAAGGCTGGTCA SFV_0314 332007 - 329794 - | putative Rhs-family protein TERM 418 330048 - 330064 + g 82 -2.2 -5.32882 | opp_overlap 330059 TGGTTTGAGCCAGTT TGACGG AAAGA CCATCA TTTTTTGTGATGGTG TERM 419 330732 - 330721 - G 70 -4.4 -4.58663 | opp_overlap 330729, overlap 330726 ATTATCCCGTAAAAA CAGA GTGG TCTG TACCAGCAGATATTC TERM 420 333044 - 333057 + r 74 -3.9 -5.05153 | opp_overlap 333044 CCTTATGTATAATGA TATTG CCAT CAATA TTTGTTTTTTCAGGT insB 333588 - 333085 - | IS1 ORF2 SFV_0316 333663 - 333878 + | putative IS1 encoded protein ykgE 334201 - 334920 + | putative dehydrogenase subunit TERM 421 335179 - 335159 - g 71 -3.3 -4.83615 | gap 1, opp_overlap 335159 335171 CAGCTCTCAGAAAAA GTGA-CGC AAAACG GCGGTCAC GTCTATTTTGCAAAA ykgF 334931 - 336358 + | hypothetical protein ykgG 336351 - 337046 + | putative transporter SFV_0320 337213 - 337001 - | hypothetical protein TERM 422 337160 - 337186 + g 88 -12.4 -3.59979 | opp_overlap 337160 CTGCTCTTCTGTAAA TATCCAGGCATT AGT AATGCCAGGATA TTTACAGTGAAAAAG TERM 423 337186 - 337160 - G 86 -12.4 -3.53012 | opp_overlap 337160 CTGCTCTTCTGTAAA TATCCAGGCATT AGT AATGCCAGGATA TTTACAGTGAAAAAG TERM 424 337308 - 337323 + r 81 -3.3 -5.40072 | TGCCCAGAGTTTTGT TGGTA TTCATC TACCA TTTTTTTGACAAGGC ykgH 337957 - 337289 - | hypothetical protein TERM 425 337476 - 337460 - G 78 -10.9 -3.48395 | opp_overlap 337455 337453 ACCGTTCGGATACAA TGACCAG TTC CTGGTCA GGTATATCATTTTTG TERM 426 337988 - 337978 - R 82 -5.4 -5.19275 | opp_overlap 337978 ATCCAGAAAATAAAA TCTG TCG CAGA TAATGTTGTATTAAT TERM 427 338063 - 338045 - R 82 -6 -5.2112 | AATATCAGCAAAAAA CCAGCATC ATG AATACTGG ATATGAAGCATGAGA betA 339841 - 338171 - | choline dehydrogenase TERM 428 339818 - 339796 - G 76 -11.2 -3.35996 | overlap 339797 GACGGGTAGCGAGAA CGTTGCCGGC TGA GCCGGCACCA ATAATGATGTAGTCA TERM 429 339817 - 339797 - G 76 -12.5 -2.61383 | overlap 339796 ACGGGTAGCGAGAAC GTTGCCGGC TGA GCCGGCACC AATAATGATGTAGTC betB 341327 - 339855 - | betaine aldehyde dehydrogenase betI 341928 - 341341 - | transcriptional regulator BetI TERM 430 341727 - 341715 - G 72 -6.9 -4.21275 | GTAATCGATTCAAAA CCGCG TCA CGCAG CTGACTGGTGATATC TERM 431 341748 - 341767 + g 81 -5.8 -4.87665 | gap 1 TGGTGATATCGCGCA TGGT-TGCT TCC AGCAGACCA TTTTTGTCCCTGAAA TERM 432 341824 - 341808 - G 78 -9.3 -3.86346 | opp_overlap 341797 341823 TGATCCCCGTAGAAA CGCCTGC ACG GCGGGCG ATCTGCGCGATCGTT TERM 433 342135 - 342086 - g 70 -10.2 -3.13109 | gap 1, opp_overlap 342088 342093 342134, overlap 342088 342093 CACAGCAGGGAAAAG GACAAAATCAATCCGGTGGT-GT TTTAC ACTTCCGCCGGATTGATTTTGTT GTTTTCCCTGACAAC TERM 434 342088 - 342133 + G 100 -15 -4.21812 | gap 1, opp_overlap 342086 342088 342093, overlap 342093 CAGCAGGGAAAAGGA CAAAATCAATCCGGTGGT-GT TTTAC ACTTCCGCCGGATTGATTTTG TTGTTTTCCCTGACA TERM 435 342133 - 342088 - g 79 -12.8 -3.11922 | gap 1, opp_overlap 342088 342093, overlap 342086 342093 CAGCAGGGAAAAGGA CAAAATCAATCCGGTGGT-GT TTTAC ACTTCCGCCGGATTGATTTTG TTGTTTTCCCTGACA TERM 436 342093 - 342128 + G 95 -9.1 -5.093 | gap 1, opp_overlap 342093 342088 342086, overlap 342088 GGGAAAAGGACAAAA TCAATCCGGTGGT-GT TTTAC ACTTCCGCCGGATTGA TTTTGTTGTTTTCCC TERM 437 342128 - 342093 - g 81 -6.9 -4.67635 | gap 1, opp_overlap 342088 342093, overlap 342088 342086 GGGAAAAGGACAAAA TCAATCCGGTGGT-GT TTTAC ACTTCCGCCGGATTGA TTTTGTTGTTTTCCC TERM 438 343105 - 343117 + G 71 -9.1 -3.56576 | TACCATTCGCCAGTT CGTGC TGG GCACG TTGATTATTCCGTTT TERM 439 343494 - 343520 + G 73 -3.7 -4.73613 | opp_overlap 343485 343483, overlap 343501 AAAACACCACGGTAA TCATGGGGCTG CCGTT CAGCTTTGTGA TTTTCTTCGTGATGG betT 342056 - 344089 + | choline transport protein BetT TERM 440 344131 - 344106 - T 95 -13.3 -4.36914 | opp_overlap 344103 TGTTTTTGCATAAAA CCGCGCCATGT CTGC ATATGGCGCGG GAATCATTGACTCGC SFV_0326 344423 - 344232 - | putative IS1 encoded protein insB 344498 - 345001 + | IS1 ORF2 TERM 441 345086 - 345105 + T 100 -10 -5.7946 | opp_overlap 345088, overlap 345078 TATTTACCTGTTTAA CAGTCCGT TGCT GCGGACTG TTTTTTTATTCAGGC SFV_0328 347208 - 345115 - | putative phage transposase TERM 442 347648 - 347637 - H 76 -4.4 -5.03994 | opp_overlap 347637 CTTTATACAGAAAAA TACC TAGA GGTA CTTTTATGGAGCAGG tauA 348610 - 349380 + | taurine transport system periplasmic protein TERM 443 349721 - 349700 - g 77 -5.9 -4.61868 | gap 1, overlap 349704 CAGGTATAGAGAAAA TGCAGCGACT GGA AATCGC-GCA CCAGATGCTGAAAAA TERM 444 349798 - 349839 + G 84 -10.8 -3.71848 | GATGGTCAACGTCAG CGGGTGGGGATTGCCCGC GCGCTG GCGGCGAATCCCCAGCTG TTATTACTCGACGAA tauB 349393 - 350160 + | taurine transporter ATP-binding subunit TERM 445 350818 - 350830 + G 84 -10.5 -3.74749 | CGGCGGAGCTGATTG CCGCG ACA CGCGG TTTAGGATTTATGGT TERM 446 350885 - 350915 + G 88 -8.2 -4.65933 | GACTGACGTGGTACT GGCGGGGATCGCGG TGA TTGCGATTATCGCC TTTCTTTTAGAACTG tauC 350157 - 350984 + | taurine transporter subunit TERM 447 351156 - 351168 + G 81 -9.1 -4.08767 | CGCAGCAGCAACGCG CGCTG GCC CAGCG TTTTGGCGAACTGCA TERM 448 351638 - 351649 + G 86 -5.8 -5.06816 | opp_overlap 351638 GAGAAAGAGAGCGAA GCCT TGTT AGGC TTTTTATTCGCCCAT tauD 350981 - 351832 + | taurine dioxygenase hemB 352945 - 351938 - | delta-aminolevulinic acid dehydratase SFV_0335 353899 - 354264 + | insertion sequence 2 OrfA protein SFV_0336 354288 - 355001 + | IS2 ORF2 SFV_0337 355207 - 356019 + | ISEhe3 orfB TERM 449 356636 - 356607 - f 100 -18.1 -3.78409 | opp_overlap 356610, overlap 356610 GTAATTTAATCTAAA TAATGCCCGTCAA GGAT TTGACGGGCATTA CTGCAAAGGACGCGC TERM 450 356633 - 356610 - g 100 -15.4 -4.01381 | opp_overlap 356610, overlap 356607 ATTTAATCTAAATAA TGCCCGTCAA GGAT TTGACGGGCA TTACTGCAAAGGACG TERM 451 356610 - 356633 + G 100 -15.4 -3.14132 | opp_overlap 356610 356607 ATTTAATCTAAATAA TGCCCGTCAA GGAT TTGACGGGCA TTACTGCAAAGGACG TERM 452 357148 - 357112 - g 82 -11.8 -3.55866 | gap 1, opp_overlap 357124, overlap 357116 CTATATCGAAATGAA TAAAGGCAAACTGGTCG CTAT CAACC-GTTTGCCTTCA GAGTATTAATCAGGA TERM 453 357144 - 357116 - g 90 -10.4 -4.40298 | gap 1, opp_overlap 357124, overlap 357112 ATCGAAATGAATAAA GGCAAACTGGTCG CTAT CAACC-GTTTGCC TTCAGAGTATTAATC yaiV 356609 - 357157 + | hypothetical protein TERM 454 357165 - 357192 + T 75 -11.4 -3.07816 | gap 1 AGTATTAATCAGGAT GCGGGGAT-AACC AAC GGTTTATTCCCGC TTAGCTCGGTCACCA yaiH 358315 - 357158 - | beta-lactamase/D-alanine carboxypeptidase sbmA 358667 - 359887 + | transport protein yaiW 359900 - 360994 + | hypothetical protein SFV_0342 361361 - 361053 - | hypothetical protein TERM 455 361134 - 361122 - G 74 -6.2 -4.57569 | GCAGCCTGCTAAAAA CGGG ATCAG CCCG AAAATGGTGCCGACA TERM 456 361303 - 361275 - G 77 -8.2 -4.13711 | gap 1, overlap 361278 GCAAAACAGCACAAA CAACGCATAGGCA ATGT TGCC-AGGCGTTG AAGAGGCATTGCGAT SFV_0343 361489 - 361833 + | hypothetical protein TERM 457 361848 - 361824 - T 93 -10.8 -4.42851 | TGAAGAAACTGAAAA CGCCCAATAA GAATA TTATCGGGCG TTAAAATATTACATT ddl 362897 - 361857 - | D-alanyl-alanine synthetase A TERM 458 362841 - 362851 + g 75 -6.8 -4.42653 | opp_overlap 362840 362841 GCCCAGCAGCACAAC GTCG AAG CGAC TTTTATCAATGGCAT yaiB 363414 - 363674 + | hypothetical protein TERM 459 363717 - 363731 + F 79 -4.2 -5.21459 | overlap 363708 363719 AAAGTTGTCACGGCC GAGACT TAT AGTCGC TTTGTTTTTATTTTT TERM 460 364018 - 364050 + G 77 -3.3 -5.04385 | GATTCGGAAATTACT GCCGCACGTAATT ATGCCGA AGGTGCGGGCGGC TTTTTTAAAGGTATC phoA 363775 - 365190 + | alkaline phosphatase TERM 461 365205 - 365193 - f 76 -4.8 -4.86731 | opp_overlap 365195 365196, overlap 365194 365195 GGGGCTGAAATAAAA CTGC GCCCG GCAG TGAATTTTCGCTGCC TERM 462 365195 - 365226 + F 100 -14.4 -5.63374 | opp_overlap 365193 365194 365195, overlap 365196 GGCTGAAATAAAACT GCGCCCGGCAGTGA ATTT TCGCTGCCGGGTGG TTTTTTTGCTGTTAG TERM 463 365196 - 365225 + F 100 -17.9 -3.96398 | opp_overlap 365193 365195 365194, overlap 365195 GCTGAAATAAAACTG CGCCCGGCAGTGA ATTT TCGCTGCCGGGTG GTTTTTTTGCTGTTA psiF 365291 - 365629 + | hypothetical protein SFV_0348 366567 - 365680 - | IS629 ORF2 TERM 464 366247 - 366259 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SFV_0349 366893 - 366567 - | IS629 ORF1 TERM 465 366956 - 366989 + H 95 -11.7 -3.86944 | CGGTTCAGATAGTGC TAACGGGTGAGCTAC GAAA GTGGCTCACCCGAAA TTTCATACTTCTGCC TERM 466 367445 - 367467 + G 86 -12.7 -3.5241 | overlap 367453 367458 367460 TCTGTGTCTGAATTT GATGGGGGC AGGCG GCCCCCGTC TGTTTGTCGCGGGTC TERM 467 367453 - 367469 + G 81 -10.1 -3.87373 | overlap 367445 367458 367460 TGAATTTGATGGGGG CAGGCGG CCC CCGTCTG TTTGTCGCGGGTCTG TERM 468 368167 - 368127 - g 95 -9.9 -4.65182 | gap 3 TACAAAGCAAAGAAA GCCGGACGT-A-ACCG-CAC CGAA GTGGCGGCCTGACGTCCGGC GAAAGTCATCAGGAT yaiC 367044 - 368159 + | diguanylate cyclase AdrA proC 368985 - 368176 - | pyrroline-5-carboxylate reductase yaiI 368985 - 369563 + | hypothetical protein TERM 469 369629 - 369645 + FH 83 -2.3 -5.64421 | GGGATGTATTGAAAT TTTTACT TTA AGTGGAA TTTTTTCTTTACAAT aroL 369746 - 370270 + | shikimate kinase II yaiA 370320 - 370511 + | hypothetical protein aroM 370769 - 371446 + | hypothetical protein yaiE 371518 - 371802 + | hypothetical protein TERM 470 371808 - 371832 + F 80 -6.3 -4.8667 | overlap 371809 371824 CTATCTGTAATTCCT CGCCTTCCCCT TGA ACGGGAGGGCA TTTTTCTGAAATATC TERM 471 371809 - 371831 + F 75 -9.8 -3.51279 | overlap 371808 371824 TATCTGTAATTCCTC GCCTTCCCCT TGA ACGGGAGGGC ATTTTTCTGAAATAT SFV_0357 372011 - 372292 + | hypothetical protein SFV_0358 372289 - 372744 + | hypothetical protein rdgC 373733 - 372822 - | recombination associated protein TERM 472 373283 - 373295 + gF 77 -3.3 -5.03314 | overlap 373268 TACGCAGTAATGCCA GCGTA TCT TCCGC TTTTTTGGCACTGGC yajF 373720 - 374766 + | fructokinase TERM 473 374813 - 374771 - TR 85 -5.5 -5.30189 | gap 1, opp_overlap 374771 374769, overlap 374775 CACAAGAGTAAAAAA CGTAGGCAATTGGCGCATCA TGCC TGATGCGACGCTTGCCG-CG TCTTATCAGGCCTAC TERM 474 374771 - 374813 + Tr 71 -9.9 -3.21924 | gap 1, opp_overlap 374771 374775, overlap 374769 CACAAGAGTAAAAAA CGTAGGCAATTGGCGCATCA TGCC TGATGCGACGCTTGCC-GCG TCTTATCAGGCCTAC TERM 475 374810 - 374775 - TR 73 -10.4 -2.949 | opp_overlap 374771 374769, overlap 374771 AGAGTAAAAAACGTA GGCAATTGGCGCATCA TGCC TGATGCGACGCTTGCC GCGTCTTATCAGGCC araJ 376186 - 374909 - | protein AraJ TERM 476 375627 - 375617 - G 74 -2.4 -5.14163 | AGCGATCAATAAAAA GGTG TAA CGCC AGCATTCCTGACTTA TERM 477 375686 - 375727 + g 78 -9.4 -3.96337 | gap 1, opp_overlap 375694 375695 375697, overlap 375696 ATTGGCGACTGTCAT CCCGGAAACCATCCCCGCC ACGGC GGCGGTGACT-TTTCCGGG TTTGATAATTTTTGA TERM 478 375782 - 375770 - G 77 -3.3 -5.0538 | overlap 375771 375772 TCCGACGCCAAAAAA TGCGC CAT GCGGA AAGCCGGATACCAGC sbcC 379359 - 376216 - | exonuclease subunit SbcC TERM 479 376566 - 376580 + g 73 -11.4 -2.77962 | overlap 376565 CAACAACCTCGACTT CCAGCG CCT CGCTGG CTTTGCGCTGTAACA TERM 480 377081 - 377112 + g 81 -7.3 -4.60924 | gap 1, opp_overlap 377076 TCGTCAAAGACGCTG GCCTGTAGCGCGGT GTCAA ACTGCGCT-TGGGC TTTTTGCAGACTTTG TERM 481 377870 - 377885 + g 85 -10.4 -4.25848 | GCCTGTAACTGTGCA CGCTGG GCTT CCAGCG TTTTGATGCGCGCTT TERM 482 378513 - 378534 + g 87 -5 -5.29445 | opp_overlap 378513 GTTGTGCCAGACTAA GCGCCGCC AGTTGA GGTTGCGC TTTTTCTTCTTCGGC sbcD 380558 - 379356 - | exonuclease subunit SbcD TERM 483 379965 - 379981 + g 70 -6.5 -4.25104 | opp_overlap 379964 379960 379965, overlap 379943 CGTGCCAATATAAAT GTCACGC ACG GCGTCAC TTTTACTGGAACCCA phoB 380748 - 381437 + | transcriptional regulator PhoB TERM 484 381546 - 381572 + G 82 -2.8 -5.28481 | overlap 381544 381560 GAGCTGCTACTTTGC TGCCTCCCGGCT TTC ATCCTGGGTGCA TTTTTTGGTTACCTG phoR 381495 - 382790 + | phosphate regulon sensor protein TERM 485 382817 - 382838 + F 100 -13.1 -4.88918 | opp_overlap 382820 CATCTTTTATTGCCA TAAGCCAGC CGAT GCTGGCTTA TTTTCTTTGCAGTCA TERM 486 382835 - 382820 - f 77 -10.4 -3.31144 | opp_overlap 382817 CTTTTATTGCCATAA GCCAGC CGAT GCTGGC TTATTTTCTTTGCAG TERM 487 383470 - 383482 + G 72 -6.9 -4.18018 | ACGGTTTGTTACCTG GCGGT GGG GCCGC TTTTCGCTACGCCGC brnQ 383197 - 384516 + | branched chain amino acid ABC transporter carrier protein TERM 488 384538 - 384561 + F 100 -15.3 -5.64304 | opp_overlap 384541 GAACATTTGTTTTAA CCACGGGGC TGCGAT GCCCCGTGG TTTTTTATTGTGTTG proY 384592 - 385965 + | putative proline-specific permease TERM 489 385982 - 386010 + F 88 -14.6 -3.03338 | opp_overlap 385969, overlap 385972 ACTTGCGTTCTGTAA GCCGGTTCAGGA GGAAA TCCTGATCCGGC TATTCCGAAAGTTAT TERM 490 386288 - 386325 + G 83 -12.8 -3.32022 | opp_overlap 386282 386279 GCATAAGCAGCGCAG TCAGCCGCA-GCCAGGCG TCAC CGCATGGCGTGCGGC-GA TTGATCTCTCCAGCG TERM 491 386460 - 386493 + G 82 -3.1 -5.26918 | gap 1, overlap 386461 386487 TTTGCCGTCGATGTA CCTGATAT-CGGCCCA CAA TGGGCTGCGGATCAGA TTTTTTATCAGATCT malZ 386124 - 387938 + | maltodextrin glucosidase TERM 492 388922 - 388906 - g 74 -10.1 -3.53091 | overlap 388915 ATTCGCGCCTCGAAA GCGCCAA AAC CTGGCGC AGAACTGTTGCTGGG TERM 493 389145 - 389125 - g 72 -4.6 -4.70659 | gap 1, opp_overlap 389131 389136, overlap 389126 389127 GTTTATAGCGAAAAA CCGGGC-GC GGTT GCAGCCCCG ACCGCTGGTCTGCAT TERM 494 389136 - 389159 + G 70 -6.6 -4.0896 | opp_overlap 389127 389125 389126, overlap 389131 389145 AAAACCGGGCGCGGT TGCAGCCCCG ACCG CTGGTCTGCA TTTTGACGAGCCTTT TERM 495 389428 - 389418 - g 83 -5.4 -5.02476 | ACAGGCGGCAAAAAA CGAT CTT ATCG AACCGTTCTTTGACG queA 388609 - 389679 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 496 389797 - 389813 + G 70 -5.1 -4.33785 | overlap 389794 CTGGTCTTTGATCGT GGCGT AGTGGAA ACGCC TTGTTTTATGCCTGT tgt 389734 - 390861 + | queuine tRNA-ribosyltransferase yajC 390884 - 391216 + | preprotein translocase subunit YajC TERM 497 391805 - 391759 - g 73 -3.8 -4.86731 | opp_overlap 391799, overlap 391762 391763 391765 TGTTCGTAAAGAAAA CAACTACG-GCCTGAGCATCAC TTTCC GCGATGCTAAAGCTCGT-GATG AAGCCATTGCGTATC TERM 498 392338 - 392323 - g 71 -9 -3.54029 | CTTCACCAAGGACAA CATCGG CAAA CCGATG GCAACCCTGTTTGTG secD 391244 - 393091 + | preprotein translocase subunit SecD secF 393102 - 394073 + | preprotein translocase subunit SecF TERM 499 394098 - 394117 + F 100 -10 -5.92337 | opp_overlap 394098 CGTTGATGTTGAAAA TCCCGGTC AGAA GATCGGGA TTTTTTTTGATGTAT TERM 500 394117 - 394098 - f 73 -7.8 -4.11216 | opp_overlap 394098 CGTTGATGTTGAAAA TCCCGGTC AGAA GATCGGGA TTTTTTTTGATGTAT yajD 394202 - 394549 + | hypothetical protein TERM 501 394696 - 394716 + T 95 -12.6 -4.30576 | opp_overlap 394696 GTTAACAATCAGAAA TGCCGGGA ATAAA TCCCGGCA TTTTCATAATCAGAA TERM 502 394716 - 394696 - T 95 -12.6 -4.14257 | opp_overlap 394696 GTTAACAATCAGAAA TGCCGGGA ATAAA TCCCGGCA TTTTCATAATCAGAA tsx 395610 - 394726 - | outer membrane protein Tsx yajI 396507 - 395908 - | hypothetical protein TERM 503 396340 - 396355 + g 71 -9 -3.53018 | overlap 396324 396338 CGTCATCTCCTGGTT CAGCGT GCTG ACGCTG TGTTTCATCTGTCGC ybaD 396598 - 397047 + | transcriptional regulator NrdR ribD 397069 - 398154 + | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase TERM 504 398667 - 398651 - g 70 -6.5 -4.17132 | overlap 398652 AAAGCTGGCAACAAA GGTGCAG AAG CTGCACT GACCGCGCTTGAAAT ribH 398189 - 398713 + | riboflavin synthase subunit beta TERM 505 398867 - 398856 - g 70 -5.8 -4.23723 | opp_overlap 398844 398841, overlap 398846 GAACAGGATGTAAAA GACG TTGA CGTC CTGTACTTCCGTGAG TERM 506 399004 - 398979 - g 73 -3.9 -4.87665 | gap 1, overlap 398980 398982 GGCCAGGTAGAAAAA GCAGTACTGCGC ATT GCGCTGTAC-GA ACTGTCTAAACGTAG TERM 507 399002 - 398982 - g 76 -11.1 -3.32986 | overlap 398980 398979 CAGGTAGAAAAAGCA GTACTGCGC ATT GCGCTGTAC GAACTGTCTAAACGT nusB 398733 - 399152 + | transcription antitermination protein NusB TERM 508 399159 - 399199 + F 95 -7.7 -5.43553 | gap 2 AAAAAGTAATATCCA GGCCGGTAGATTCACGGAA GACTG TTCCATG-ATC-GCCGGCC TTTTCTTTTTTACCT TERM 509 399936 - 399949 + G 70 -4.5 -4.47328 | overlap 399937 GCGCACGTATTGACC TGGCA TTGC TGCCG TTTTCTGATGCGCTT TERM 510 400148 - 400168 + G 73 -9 -3.64703 | GGGCTTTGTTTTATT CGTGACGG CGAAC CTGTCACG TTTGACTGGAAAGGA thiL 399230 - 400207 + | thiamine monophosphate kinase TERM 511 400304 - 400324 + G 100 -13.3 -4.04719 | opp_overlap 400283 400282 CGTTCCTGGCACGAT GGGATCGCT GGC GGCGATCCC TTTCTGGTATCTGAT pgpA 400194 - 400703 + | phosphatidylglycerophosphatase A yajO 401731 - 400757 - | putative NAD(P)H-dependent xylose reductase TERM 512 401205 - 401215 + g 86 -6.8 -4.98255 | opp_overlap 401198, overlap 401198 CTGACAAACTGCGCC CAGC AGT GCTG TTTTTGTAGTTCCAG dxs 403648 - 401786 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 513 401959 - 401972 + g 78 -5.2 -4.78237 | CTCCGCTACCTGCGC CGCC CATAAT GGCG TTTTCTTCTACGGTG ispA 404572 - 403673 - | geranyltranstransferase xseB 404814 - 404572 - | exodeoxyribonuclease VII small subunit yajK 405020 - 406468 + | thiamine biosynthesis protein ThiI thiJ 407112 - 406522 - | hypothetical protein apbA 407986 - 407075 - | 2-dehydropantoate 2-reductase TERM 514 408080 - 408026 - H 88 -12.5 -3.61398 | gap 2, opp_overlap 408023 408077 408078, overlap 408027 408075 CCGGGTGTTCAATAA GGC-TATCCCTTAATTGTGCAT-GCTG TTG CGACTATGCACAATTAAGGGATACGTC CTGGTGCAGGACTGT TERM 515 408077 - 408027 - H 84 -13.7 -2.76696 | opp_overlap 408023, overlap 408026 408075 CGGGTGTTCAATAAG GCTATCCCTTAATTGTGCAT-GCTG TTG CGACTATGCACAATTAAGGGATA-C GTCCTGGTGCAGGAC TERM 516 408078 - 408092 + H 73 -10 -3.38135 | opp_overlap 408026 408075, overlap 408077 ACAATTAAGGGATAC GTCCTG GTG CAGGAC TGTTGGTTATTTAAC yajQ 408154 - 408645 + | nucleotide-binding protein TERM 517 408673 - 408690 + T 95 -12.7 -4.1196 | AGCTACTGATTGTCA GGGCCAC CGTG GTGGCCC TTTTGACCATGCATT SFV_0392 410435 - 408705 - | hypothetical protein TERM 518 408902 - 408912 + g 100 -5.4 -5.47218 | AGGTAATGTGTGCCA TGCA TTC TGCA TTTTTTTGCATACAA TERM 519 409141 - 409157 + g 76 -3.7 -4.99972 | AATAGTCCTCTCATT TCACTTT CAG AATGTGA TTTTTGCTCTTTTAT TERM 520 409802 - 409818 + g 82 -2.2 -5.37043 | opp_overlap 409815, overlap 409815 TATTCAGCGCCTTAT CGGCAT AATGA ATGGCG TTTTTTATATCGCCT TERM 521 409815 - 409832 + g 71 -2.6 -4.93877 | opp_overlap 409815, overlap 409802 ATCGGCATAATGAAT GGCGTT TTTTAT ATCGCC TTTTGTTTGATAACC SFV_0393 412641 - 410488 - | hypothetical protein TERM 522 411520 - 411537 + g 74 -9.9 -3.5594 | AACAGAAATTTGTTT TCCGTCT TTAT AGACGGA TTTAGACAGTAACTT TERM 523 412778 - 412815 + r 79 -9.4 -4.12603 | gap 1, opp_overlap 412778 412781 TTATGGTGTTACGAA GTACGGTGCTATTTTAT TTTTC ATGAA-TAGCACCGTGC TTATTATTTAATAAG yajR 414193 - 412823 - | putative transport protein TERM 524 414023 - 414007 - G 77 -6.5 -4.67234 | overlap 414008 ACGGAATCTGAAAAA CGGCCTG GGT CAGACCA TAAATACCAATGGCA TERM 525 414122 - 414110 - G 72 -7.7 -3.99324 | overlap 414112 CGGCAGTACCATAAA CATGC CCA GCATG CGCAATGAAAATACG SFV_0395 414587 - 415861 + | putative periplasmic protein TERM 526 415843 - 415885 + F 84 -8.4 -4.56914 | overlap 415835 GCTTGAGCTAAAAGG GGGGGGAGGGAGTGAGTAAA GAA TATACTCTTTCTGTCCCTCC TTTTAGTTTGAATAC TERM 527 416106 - 416118 + G 76 -3.5 -4.95484 | ATATTTTATGTTGCC TAATA GAA TATTA TTTTCTTTAATGCTG TERM 528 416323 - 416311 - g 72 -7.7 -3.86202 | CGCTATGATACCAAA CCTGA TGT TCAGG AAGCGATTAAATGGT TERM 529 416977 - 416957 - g 74 -9.7 -3.47227 | opp_overlap 416959 CTGTAAGGACCACAA TCGTTGCCG CAA CGGCAACTA TTAACGGCAAGGATG TERM 530 416959 - 416975 + G 79 -12.3 -3.01712 | opp_overlap 416957 GTAAGGACCACAATC GTTGCCG CAA CGGCAAC TATTAACGGCAAGGA SFV_0396 416098 - 417033 + | hypothetical protein SFV_0397 417487 - 417089 - | hypothetical protein SFV_0398 417981 - 417622 - | hypothetical protein TERM 531 418039 - 418063 + r 83 -13.7 -2.62396 | opp_overlap 418041 418043 418045, overlap 418041 418043 418045 TGCTCACTCTGTCAA GAGATACGGTT ATT AGCCGTATCTC TGATCTCAGACAATA TERM 532 418041 - 418061 + r 72 -10.5 -2.85351 | opp_overlap 418041 418043 418045, overlap 418039 418043 418045 CTCACTCTGTCAAGA GATACGGTT ATT AGCCGTATC TCTGATCTCAGACAA TERM 533 418104 - 418077 - R 75 -10 -3.50393 | opp_overlap 418084 418096, overlap 418084 TCTGATCTCAGACAA TAAAAAAGGTGC CGTA GCACCTTTTTAA TAGAGAGGTTTTGTT TERM 534 418097 - 418084 - R 100 -8.1 -5.60689 | opp_overlap 418084 418096, overlap 418077 TCAGACAATAAAAAA GGTGC CGTA GCACC TTTTTAATAGAGAGG TERM 535 418084 - 418097 + r 84 -8.1 -4.72272 | opp_overlap 418084 418077, overlap 418096 TCAGACAATAAAAAA GGTGC CGTA GCACC TTTTTAATAGAGAGG TERM 536 418929 - 418909 - R 73 -9.7 -3.45386 | overlap 418897 ACAGGGGATAATCAA TGCTGCCCT TTG AGGCCAGCA GGAATCCCCCAATCA cyoD 419349 - 419020 - | cytochrome o ubiquinol oxidase subunit IV cyoC 419963 - 419349 - | cytochrome o ubiquinol oxidase subunit III TERM 537 419676 - 419646 - G 72 -7.5 -4.00042 | opp_overlap 419660 TCCGGCACCAAACAA CCAGGTCAACGCC AGCCA GGAGATAACCTGG CTTTTGTTGTTTTTG TERM 538 419660 - 419677 + g 100 -8.4 -5.18715 | opp_overlap 419646 ACCAGGTCAACGCCA GCCAGG AGATAA CCTGGC TTTTGTTGTTTTTGT TERM 539 419990 - 420017 + r 77 -9.2 -3.85698 | opp_overlap 419997, overlap 419998 GCCTTAGTAATCTCA TCGAAATGCTGG TTTT CCAGTTTTTCGA TTTCTGCCACCGGCA TERM 540 419998 - 420009 + r 78 -5.8 -4.84529 | opp_overlap 419997, overlap 419990 AATCTCATCGAAATG CTGG TTTT CCAG TTTTTCGATTTCTGC SFV_0404 423302 - 422496 - | ISSfl4 ORF3 SFV_0405 423412 - 423278 - | ISSfl4 ORF3 SFV_0406 423779 - 423432 - | ISSfl4 ORF2 SFV_0407 424450 - 423776 - | ISSfl4 ORF1 TERM 541 424114 - 424102 - G 73 -9.1 -3.62046 | CGATCCGGGCAACAA CAGCC CCA GGCTG TAACGCCTGCTTAGC TERM 542 424454 - 424481 + r 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG TERM 543 424619 - 424599 - R 76 -4.9 -4.90525 | opp_overlap 424602 CAATTCGAAATAAAA CAATTATTT AAC AAATAATTA TCATTAAAGTGACAA ampG 426295 - 424820 - | muropeptide transporter TERM 544 425447 - 425419 - G 72 -11 -3.1012 | overlap 425407 425417 425416 AAATGCCGAAAATCA GCAGCGCCCG GAACAGCGA CAGGCGCTGC ATCAAAATCCCACCG TERM 545 425956 - 425943 - G 75 -4.5 -4.81551 | GAGGCAGAGCAAAAA GCGAT CACC ACCGC CAGCGCCGCCATCCA TERM 546 426134 - 426118 - G 71 -2.9 -4.76892 | overlap 426119 AGAGGAATTTAAAAA CGTAAGC CTG GCCTACC AGAGAGAAGAAACCA yajG 427019 - 426339 - | hypothetical protein TERM 547 427593 - 427616 + H 93 -9.6 -4.59984 | opp_overlap 427586 427598, overlap 427598 GCTAAAGATTTTATG AAAAACGGCC TGCG GGCCGTTTTG TTTTGTCTGGATTTT TERM 548 427598 - 427611 + H 100 -9.5 -5.23292 | opp_overlap 427598, overlap 427593 AGATTTTATGAAAAA CGGCC TGCG GGCCG TTTTGTTTTGTCTGG TERM 549 427611 - 427598 - H 100 -9.5 -4.74132 | opp_overlap 427598 427593 AGATTTTATGAAAAA CGGCC TGCG GGCCG TTTTGTTTTGTCTGG TERM 550 427698 - 427683 - H 85 -6.8 -5.055 | overlap 427685 GGAATTGTGAAAAAA TACGCG ACAG CGCGCA ATAACCGTTCTCGAC TERM 551 427696 - 427685 - H 71 -7.2 -4.15235 | overlap 427683 AATTGTGAAAAAATA CGCG ACAG CGCG CAATAACCGTTCTCG tig 427883 - 429181 + | trigger factor TERM 552 429216 - 429239 + F 100 -12.4 -5.9873 | opp_overlap 429216 429215 TAAATTCGCACAAAG GCCCGTCACC GCCA GGTGGTGGGC TTTTTTTTGTCATGA TERM 553 429752 - 429768 + G 70 -5 -4.44667 | ATCTGTATGGGCCAG GCGGCC TCGAT GGGCGC TTTCTTGTTGACCGC clpP 429428 - 430051 + | ATP-dependent Clp protease proteolytic subunit clpX 430177 - 431451 + | ATP-dependent protease ATP-binding subunit TERM 554 431480 - 431508 + F 80 -6.7 -4.88711 | opp_overlap 431485, overlap 431485 TACAATTAGTTAACC AAAAAGGGGGGAT TTT ATCTCCCCTTTAA TTTTTCCTCTATTCT TERM 555 431503 - 431485 - f 93 -8.8 -4.88407 | opp_overlap 431485 431480 TTAGTTAACCAAAAA GGGGGGAT TTT ATCTCCCC TTTAATTTTTCCTCT TERM 556 431485 - 431503 + F 91 -11 -4.3623 | opp_overlap 431485, overlap 431480 TTAGTTAACCAAAAA GGGGGGAT TTT ATCTCCCC TTTAATTTTTCCTCT TERM 557 432585 - 432572 - g 77 -3.1 -5.10029 | gap 1, overlap 432562 432574 AGCAAGGTCAAAAAA GACCTG CGT CAGG-C GCAGGAAATCCTTGA TERM 558 432590 - 432574 - g 82 -9.4 -4.17355 | overlap 432562 432572 CAAGGTCAAAAAAGA CCTGCG TCAGG CGCAGG AAATCCTTGATACCG TERM 559 432932 - 432921 - g 70 -4.4 -4.45485 | opp_overlap 432914 ATGAGATCGACAAAA TGTC TTCT GACA TGCGAGGCGATCCGG TERM 560 433634 - 433622 - g 75 -5.5 -4.72986 | GATTTTTACGAAAAA CGTGA CAT CCACG TCCACGTACCGGAAG lon 431639 - 433993 + | DNA-binding ATP-dependent protease La TERM 561 434058 - 434023 - f 79 -4.6 -5.14163 | opp_overlap 434026, overlap 434025 434026 ATGCACTAATAAAAA CAGGGCTGGCAGGC TAATTCGG GCTTGCCAGCCTTT TTTTGTCTCGCTAAG TERM 562 434056 - 434025 - f 74 -7.2 -4.19587 | opp_overlap 434026, overlap 434023 434026 GCACTAATAAAAACA GGGCTGGCAGGC TAATTCGG GCTTGCCAGCCT TTTTTTGTCTCGCTA TERM 563 434026 - 434055 + F 100 -13.6 -5.72616 | opp_overlap 434026 434025 434023 CACTAATAAAAACAG GGCTGGCAGGCT AATTCG GGCTTGCCAGCC TTTTTTTGTCTCGCT TERM 564 434055 - 434026 - f 73 -10.7 -3.10668 | opp_overlap 434026, overlap 434025 434023 CACTAATAAAAACAG GGCTGGCAGGC TAATTCGG GCTTGCCAGCC TTTTTTTGTCTCGCT hupB 434202 - 434474 + | transcriptional regulator HU subunit beta TERM 565 434510 - 434529 + F 100 -10 -5.7827 | GTGACGAAGTTCAAG GGCGCATC TACT GATGTGCC TTTTTTATTTGTATT TERM 566 435404 - 435377 - g 73 -12 -2.5655 | overlap 435376 GTGAGTTACATCAAG CTGGTTGCCGCA ACGA TGCAGCAACCGG TTAGCGATGCGGATA TERM 567 436455 - 436424 - g 86 -3.6 -5.36965 | gap 1 GAAGATCAGAAAAAA GCGATGGTGCAGGGT ATC ACCCAGAACAA-CGC ACAAATCGTCTTTGA ybaU 434666 - 436537 + | peptidyl-prolyl cis-trans isomerase (rotamase D) TERM 568 436580 - 436607 + F 72 -10.6 -2.93447 | opp_overlap 436581 436586, overlap 436586 GTTGCAGCTGTAACA AGAAAAGGTCGC TTTC GCGGCCTTTTCC ATTTCTGAACATTGC TERM 569 436606 - 436581 - f 86 -11.9 -3.63515 | opp_overlap 436580 436586, overlap 436586 TTGCAGCTGTAACAA GAAAAGGTCGC TTTC GCGGCCTTTTC CATTTCTGAACATTG TERM 570 436586 - 436601 + F 81 -8.2 -4.39571 | opp_overlap 436581 436586, overlap 436580 GCTGTAACAAGAAAA GGTCGC TTTC GCGGCC TTTTCCATTTCTGAA TERM 571 436601 - 436586 - f 78 -6 -4.89477 | opp_overlap 436586 436580, overlap 436581 GCTGTAACAAGAAAA GGTCGC TTTC GCGGCC TTTTCCATTTCTGAA ybaV 436688 - 437059 + | hypothetical protein TERM 572 437065 - 437078 + F 70 -2.4 -5.0133 | opp_overlap 437065 AACCCTGTAATTAAT TTGC ATAGTG GCAA TTTTTTGCCAGACTG TERM 573 437096 - 437118 + F 73 -10.7 -2.96274 | opp_overlap 437096, overlap 437091 437098 TTTTGCCAGACTGAA GAGGTCATA CCAGT TATGACCTC TGTACTTATAACAAC TERM 574 437118 - 437096 - f 74 -10.7 -3.12351 | opp_overlap 437096 437091 437098 TTTTGCCAGACTGAA GAGGTCATA CCAGT TATGACCTC TGTACTTATAACAAC ybaW 437153 - 437551 + | hypothetical protein ybaX 438298 - 437603 - | queuosine biosynthesis protein QueC TERM 575 438338 - 438324 - R 88 -8.6 -4.89477 | GCTTGAACAATAAAA GCGTTA TGG TAACGC CTGCGATTAACCCGG ybaE 439787 - 438363 - | hypothetical protein TERM 576 438711 - 438729 + g 79 -2.2 -5.1925 | overlap 438712 438713 GTCTGCGTGTGCCAG TAGGGTCG TGT CGTCCCAG TTTTTTGCGTTATGA TERM 577 440578 - 440567 - g 95 -5.8 -5.44119 | overlap 440568 TCGATGTCAAAAAAA TGCC ACTC GGCA GCGTCACCAAGATCT cof 440155 - 440973 + | hypothetical protein TERM 578 440991 - 441006 + F 100 -11.8 -6.15259 | AGATCCCTTCCAGCA CCGGGC AATT GCCCGG TTTTTTTTTGCGTTG TERM 579 441114 - 441100 - g 72 -4.3 -4.6008 | overlap 441112 AAAATAGAATTAAAA GAGAA AAAAA TTCTC CGTGGAAGGGCTATG TERM 580 441318 - 441305 - g 74 -2.3 -5.03314 | TGGATCCGGAAAAAA TAGGC CTCG GCCTG ACCGCCTTTGTGCTG ybaO 441019 - 441585 + | putative LRP-like transcriptional regulator mdlA 441615 - 443387 + | putative multidrug transporter membrane\ATP-binding components mdlB 443380 - 445161 + | putative multidrug transporter membrane\ATP-binding components TERM 581 445198 - 445221 + F 89 -8.9 -4.68645 | opp_overlap 445198 445193 GGTGCAAAAATGTAA CGCACTGTG CACTGT CATAGTGCG TTTTCATTTTCAATC glnK 445204 - 445680 + | nitrogen regulatory protein P-II 2 TERM 582 445852 - 445865 + G 70 -5.9 -4.15453 | overlap 445863 TGTTTATGACTATTC CGGGG ATTG CCCTG TTTTACGGTGGGTTG amtB 445710 - 446996 + | ammonium transporter TERM 583 447013 - 447039 + T 100 -11.7 -5.68023 | gap 1, opp_overlap 447013 AAGCACTGCAAAAAA TAGCCGGACGGT TTTC ACC-TCCGGCTA TTTTTTTAATTGTGA TERM 584 447039 - 447013 - T 100 -11.7 -5.07053 | gap 1, opp_overlap 447013 AAGCACTGCAAAAAA TAGCCGGACGGT TTTC ACC-TCCGGCTA TTTTTTTAATTGTGA tesB 447905 - 447045 - | acyl-CoA thioesterase II TERM 585 447935 - 447925 - H 74 -6.8 -4.24342 | overlap 447926 CTCTCCAGTAACAAA GCTG CCG CAGC AAGCCAAAGTGAGTT ybaY 448123 - 448695 + | hypothetical protein TERM 586 448773 - 448798 + F 100 -9.8 -5.61596 | opp_overlap 448773 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 587 448798 - 448773 - f 72 -9.1 -3.61398 | opp_overlap 448773 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SFV_0428 448788 - 450134 + | IS4 orf TERM 588 450145 - 450116 - T 89 -9.3 -4.59109 | opp_overlap 450117, overlap 450118 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACTCCGCCCGGAGA TERM 589 450117 - 450144 + T 81 -12.8 -3.14132 | opp_overlap 450116 450118 ACAGCCCCGAAAAAG AGCCAGTCAGTT GCTT AACTGACTGGCA TTACTCCGCCCGGAG TERM 590 450143 - 450118 - T 100 -16.3 -3.90762 | opp_overlap 450117, overlap 450116 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTCCGCCCGGA ybaZ 450553 - 450164 - | hypothetical protein TERM 591 450557 - 450547 - G 72 -6.8 -4.16016 | GCATTGCGCAAGAAA CCAG CAT CTGG CACGCAATGGGTTGC ybaA 450854 - 451207 + | hypothetical protein ylaB 452805 - 451249 - | hypothetical protein TERM 592 451667 - 451685 + g 80 -5.2 -5.02074 | TAGTGATTGATCATT TCACGCAG CAA TTGCGGGA TTTTTTCCGAGGTGA ylaC 453472 - 452963 - | hypothetical protein TERM 593 453074 - 453060 - G 77 -11.4 -3.13403 | opp_overlap 453051, overlap 453058 TGTTCCTTATGAACA TCCGCG ACA CGCGGA GAGTTCAAGATGGCT ylaD 454100 - 453549 - | maltose O-acetyltransferase ybaJ 454890 - 454516 - | hypothetical protein TERM 594 455401 - 455416 + r 79 -11.8 -3.28537 | opp_overlap 455401 GTTATGCATAAAAAA GGCCGC TTAC GCGGCC TTAGTGATTACATGT TERM 595 455416 - 455401 - R 100 -11.8 -5.28176 | opp_overlap 455401 GTTATGCATAAAAAA GGCCGC TTAC GCGGCC TTAGTGATTACATGT acrB 458585 - 455436 - | acriflavin resistance protein TERM 596 456756 - 456777 + g 79 -4.4 -4.93877 | GAAGCCGTTAACGGC GAACACCG ACTCAA CGTTGTTC TTTTCTTTGGTCAGA TERM 597 458459 - 458498 + g 100 -15.8 -3.57144 | AGGCGGAGATCGTTA CTGCCGGCGGTGCAAT CGTAGGAT ATTGCGCCACCGGCAG TTTGAGGATCGCCAG acrA 459837 - 458608 - | acriflavin resistance protein A TERM 598 459772 - 459790 + g 93 -6 -5.17744 | opp_overlap 459768 CATCAGAACGACCGC CAGAGG CGTAAAC CCTCTG TTTTTGTTCATATGT acrR 459943 - 460590 + | DNA-binding transcriptional repressor AcrR TERM 599 461013 - 461000 - g 70 -3.7 -4.62783 | overlap 460983 CAGCTACGGCAAAAA GTCGC TGAA GCGCC GGAAAAAATGCGCCA TERM 600 461534 - 461520 - g 79 -4.2 -5.15969 | CTTTAACTGAAAAAA CGGC GCAGGAA GCCG TCTCCCCGGATGAAG aefA 460718 - 464080 + | potassium efflux protein KefA ybaM 464453 - 464292 - | hypothetical protein priC 464994 - 464467 - | primosomal replication protein N'' ybaN 465064 - 465441 + | hypothetical protein apt 465594 - 466145 + | adenine phosphoribosyltransferase TERM 601 466197 - 466221 + F 70 -9.9 -3.09492 | opp_overlap 466146, overlap 466197 466199 466215 CACAAGATGTGCATT CAGCCTCGCCG TTC TGACGGGGCTG TGTTAGCATTACCCC TERM 602 466456 - 466428 - g 72 -5.2 -4.56597 | gap 1, opp_overlap 466397 GTGGCGTCGGAAAAA CCTCTATCGCCCG ACTG CTGGCGA-AGGGG CTAAACTGCGAAACC TERM 603 467510 - 467490 - g 74 -10.4 -3.53224 | overlap 467491 TACCGCTCCCGGAAA CCACCAGC CAGGT GCTGGCGG CGCGCCAGCAGTTGC TERM 604 467591 - 467564 - g 76 -10.5 -3.36112 | gap 1 GCAAAAAAGAGTGAA CCGGCAGC-CGC TACCC GCGCGCGGCCGG TGAATAACGCTGCGC TERM 605 467748 - 467732 - g 75 -4.3 -4.7497 | overlap 467735 GTGATGCAGCAAAAA GAAGTGG TCG CCACGCC GAAGGCGCTGAAAAA TERM 606 467745 - 467735 - g 77 -6.8 -4.4831 | overlap 467732 ATGCAGCAAAAAGAA GTGG TCG CCAC GCCGAAGGCGCTGAA TERM 607 467797 - 467784 - g 88 -5.2 -5.27779 | TGGAACATGAAAAAA CGCC GGAACT GGCG GTGAAGCTAGCGGCA TERM 608 467945 - 467903 - g 71 -9.1 -3.56594 | opp_overlap 467912 467918 TTAAATGCCTGGAAA GAGGAGAGCGACAACGCAG TATGT CTGCATTTGCGCTCCTCTC AGCGGCATTTGAACA TERM 609 468115 - 468098 - g 95 -6.9 -5.17744 | opp_overlap 468098 468095 ATATACGAAGAAAAA CTTGCGC AGGC GCGCGAG TCCATTATTGCGGAT dnaX 466274 - 468199 + | DNA polymerase III subunits gamma and tau TERM 610 468201 - 468217 + F 77 -10.9 -3.25015 | TCCGCCCCATTTGAT CGTAAGC ACA GCTTACG TTCGTCATCCTTAAC TERM 611 468325 - 468313 - g 91 -3.4 -5.49234 | AGATGCAAGAAAAAA TGCA GAAAA TGCA GGAAGAGATCGCGCA ybaB 468252 - 468581 + | hypothetical protein TERM 612 468661 - 468617 - g 72 -10.6 -3.07622 | gap 1, overlap 468607 468620 ACACAGCTTATGGAA GCACTGCGCTGTCTGCCGGGC GTTG GCCCGA-AGTCGGCGCAGCGT ATGGCGTTCACGCTG TERM 613 468658 - 468620 - g 81 -13.1 -2.75382 | gap 1, overlap 468617 CAGCTTATGGAAGCA CTGCGCTGTCTGCCGGGC GTTG GCCCGA-AGTCGGCGCAG CGTATGGCGTTCACG TERM 614 469001 - 468990 - g 87 -4.4 -5.21709 | TGGCAGAGGAAAAAA TCAC TGAA GTGA TCCTCGCCACCAATC recR 468581 - 469186 + | recombination protein RecR TERM 615 469186 - 469221 + F 72 -10.4 -2.90804 | opp_overlap 469177 469192, overlap 469185 469195 TAAGATTCGTTTTTA AGCAAACGAGAGCAGG AGCA CCTGCTCTCGCTTGAA ATTATTCTCCCTTGT TERM 616 469215 - 469192 - f 100 -16.8 -3.90112 | opp_overlap 469186 469185 469195, overlap 469177 TCGTTTTTAAGCAAA CGAGAGCAGG AGCA CCTGCTCTCG CTTGAAATTATTCTC TERM 617 469195 - 469212 + F 73 -11.3 -2.55818 | opp_overlap 469192, overlap 469186 469185 TTTTTAAGCAAACGA GAGCAGG AGCA CCTGCTC TCGCTTGAAATTATT TERM 618 469757 - 469737 - f 93 -10.5 -4.62069 | GCGGCAGGCGAAAAA CCAGAAAAC GGC GTCTTCTGG GAATCGGCTGGCGAA TERM 619 470421 - 470405 - f 80 -7.3 -4.60487 | overlap 470407 GACGACGCGGAAAAA TACCAGA CCT TCTGGCA ACAGTTTGGCCTGGT TERM 620 470419 - 470407 - f 71 -7.7 -3.91506 | overlap 470405 CGACGCGGAAAAATA CCAGA CCT TCTGG CAACAGTTTGGCCTG TERM 621 471175 - 471202 + F 100 -15.7 -5.50723 | GGTTTCCTGATGTCA TGCCGGATGAC CTTTGT GTCATCCGGCA TTTTTCTTTTCATCA adk 471350 - 471994 + | adenylate kinase hemH 472126 - 473088 + | ferrochelatase ybaC 474044 - 473085 - | putative lipase TERM 622 473113 - 473137 + g 70 -5.7 -4.3129 | gap 1, opp_overlap 473110, overlap 473111 GTAAAGAACTGAGCG CCGTCG-CGA AGAGCC TCGTCGGCGG TTTTCATCATCCGTG TERM 623 475127 - 475106 - g 78 -7.9 -4.37198 | AAGCGAAACGTAAAA CCCAGCATC CGCT GCTGCCGGG CGCTATAGCGGAATT gsk 474196 - 475500 + | inosine-guanosine kinase TERM 624 475518 - 475549 + T 72 -8.6 -3.71873 | opp_overlap 475528 475529, overlap 475519 475528 475529 TATCGTCGGTTCGTA GGCCAGATAAGGCG TTCA CGCCGCATCTGGCA TTTGGCTCTCGATGC TERM 625 475519 - 475548 + T 77 -12.1 -2.82803 | opp_overlap 475528 475529, overlap 475518 475528 475529 ATCGTCGGTTCGTAG GCCAGATAAGGCG TTCA CGCCGCATCTGGC ATTTGGCTCTCGATG ybaL 477309 - 475633 - | putative cation:proton antiport protein TERM 626 477543 - 477511 - R 87 -10.6 -4.13945 | opp_overlap 477501, overlap 477514 ATGGCGACTGTAAAA CGATGCAGCCAAAG TTTGC CTTTGGCTGCAATG AAATCAGTCTTTATG TERM 627 477540 - 477514 - R 93 -15.3 -3.09831 | opp_overlap 477501, overlap 477511 GCGACTGTAAAACGA TGCAGCCAAAG TTTGC CTTTGGCTGCA ATGAAATCAGTCTTT fsr 478767 - 477547 - | fosmidomycin resistance protein TERM 628 477865 - 477853 - G 81 -10.5 -3.66424 | TAAAATCAGCGTAAA CGGCG CAA CGCCG AGGATAGAGCCCCAA TERM 629 478452 - 478433 - G 74 -7.8 -4.10007 | AGAACTGCGCCAAAA CTGCCCGC CAGC GCAAGCAG CACCAGACCACTTAA TERM 630 478733 - 478748 + g 72 -6.8 -4.23045 | gap 1, overlap 478732 478733 GTTGACGCAGCGGCG CCC-GCC ACA GGCTGGG TTTGTTCACTCATTG TERM 631 480667 - 480644 - R 100 -16.8 -3.67976 | opp_overlap 480637 480642 480640, overlap 480637 GGCAGTAATCCGAAA GTGCCGGATG TTTG CATCCGGCAC AATGCTTAATCGCGG ybaK 481152 - 480673 - | hypothetical protein TERM 632 480811 - 480822 + g 79 -2.2 -5.24129 | GGGGGCGTCGATAAT CGTT GGCA GACG TTTTTTCTGCCCCAG TERM 633 481329 - 481350 + r 90 -7.3 -5.40072 | overlap 481330 AAATTCCTCTTTGAC GGGCCAATA GCGA TATTGGCCA TTTTTTTAGCGCAAC TERM 634 481330 - 481349 + r 83 -10.8 -3.83561 | overlap 481329 AATTCCTCTTTGACG GGCCAATA GCGA TATTGGCC ATTTTTTTAGCGCAA ybaP 482150 - 481356 - | putative ligase TERM 635 481952 - 481971 + g 73 -3.5 -4.7657 | TGGAAACATCCGCCT CGACGAT CAGCGC ATCGGCG TTTTTGAGCTTTTTG ybaQ 482234 - 482629 + | hypothetical protein ybaR 485348 - 482844 - | copper exporting ATPase ybaS 485610 - 486542 + | glutaminase ybaT 486545 - 487837 + | putative amino acid/amine transport protein TERM 636 488005 - 487987 - g 73 -3.8 -4.7497 | GCGATGTAGCAAAAA TTACCGGC CTG ACCAGCAA AGCCATTCGCTTCTA ybbI 487962 - 488372 + | DNA-binding transcriptional regulator CueR ybbJ 488815 - 488369 - | hypothetical protein ybbK 489741 - 488824 - | putative protease TERM 637 489622 - 489645 + g 72 -9.7 -3.33969 | GAGCCCCGGCTGTAA CGTTTTGGT ATAGCG ACCAAAACG TTCTACCGTCCATTG ybbL 489887 - 490564 + | putative ABC transporter ATP-binding protein YbbL ybbM 490551 - 491330 + | putative metal resistance protein TERM 638 491359 - 491328 - T 95 -10.9 -4.4846 | opp_overlap 491333 491336, overlap 491329 CAATTGAAGAAGAAA TGATGCGATGCCG GATGCG CAGCATCGCATCC GGCGTTGTGGTTCAT TERM 639 491358 - 491329 - T 90 -14.4 -3.27992 | opp_overlap 491333 491336, overlap 491328 AATTGAAGAAGAAAT GATGCGATGCCG GATGCG CAGCATCGCATC CGGCGTTGTGGTTCA TERM 640 491333 - 491366 + T 100 -16.8 -2.81547 | opp_overlap 491329 491328, overlap 491336 GAAGAAGAAATGATG CGATGCCGGATGCG CAGCAT CGCATCCGGCGTTG TGGTTCATGTGCCGA TERM 641 491336 - 491363 + T 95 -14.9 -3.55487 | opp_overlap 491329 491328, overlap 491333 GAAGAAATGATGCGA TGCCGGATGCG CAGCAT CGCATCCGGCG TTGTGGTTCATGTGC ybbN 492283 - 491393 - | putative thioredoxin-like protein TERM 642 491682 - 491706 + g 70 -10.7 -2.83715 | TTCAGCAGTTCGATT TGCGCTACCAG CCC CTGGTAGCGGG TGTCCTGATCCTGCA ybbO 493078 - 492308 - | short chain dehydrogenase TERM 643 493862 - 493893 + G 76 -8 -4.26681 | gap 1, opp_overlap 493857 493856 GACGAAGAAGCGCGG GCAAAGTTG-CGCGC GAA GCACGTCGGCTTTGC TTTTCAGTCATTTAT ybbA 493700 - 494302 + | ABC transporter ATP-binding protein TERM 644 494779 - 494789 + G 78 -8.2 -4.1964 | opp_overlap 494779 GAAGTGATTCAGGAA CCGG ATT CCGG TTTTAACCTCTTCCA TERM 645 496622 - 496636 + G 73 -11.4 -2.6999 | overlap 496618 496615 496620 GGATTGTTCTGCCGT GCAGCG GTG CGCTGC TGCTGTCGCTTTTCG ybbP 494299 - 496713 + | putative oxidoreductase TERM 646 496888 - 496912 + T 83 -12.9 -3.11999 | opp_overlap 496888 GTCGGTTTTTTTAAA GGCCGAAGG AGGTAAA CCTTCGGCC TTAGCTACGTTTCCT TERM 647 496912 - 496888 - T 90 -12.9 -3.53012 | opp_overlap 496888 GTCGGTTTTTTTAAA GGCCGAAGG AGGTAAA CCTTCGGCC TTAGCTACGTTTCCT TERM 648 497364 - 497332 - T 85 -7.3 -5.00616 | gap 1, opp_overlap 497332 497333 497340, overlap 497340 CTTGGGCGGAAAAAA TA-AAAAAACCGAC TGTCAT GTCGGTTTTTTATA TCTGTATTCTGGTGC TERM 649 497340 - 497355 + T 89 -6.1 -5.4492 | opp_overlap 497332 497340, overlap 497333 497332 GAAAAAATAAAAAAA CCGAC TGTCAT GTCGG TTTTTTATATCTGTA TERM 650 497355 - 497340 - T 100 -6.1 -6.28401 | opp_overlap 497340 497333 497332, overlap 497332 GAAAAAATAAAAAAA CCGAC TGTCAT GTCGG TTTTTTATATCTGTA TERM 651 497374 - 497384 + T 78 -5.4 -4.77165 | TTTATATCTGTATTC TGGT GCA ACCA TTTTGTTCTCACGAC ybbB 498519 - 497425 - | tRNA 2-selenouridine synthase TERM 652 497899 - 497912 + g 72 -4.5 -4.70879 | opp_overlap 497898 CCACAGGCGCAAATC CTGAC GGGC GTCGG TTTTTAGCATTTCGG ybbS 499514 - 498588 - | DNA-binding transcriptional activator AllS TERM 653 499536 - 499551 + H 73 -4 -4.82819 | gap 1, opp_overlap 499536, overlap 499538 GTATCCCCTTTTAAA TC-CGCA AGT TGCGTGA TTTTCTTATCCTCTG ybbT 499744 - 500226 + | ureidoglycolate hydrolase ybbU 500304 - 501119 + | DNA-binding transcriptional repressor AllR TERM 654 501132 - 501149 + F 100 -12.7 -5.40474 | TAGTGTCTGTCGCAT CCCGCTC TGCG GAGCGGG TTTTTTTGACAAAAT TERM 655 501189 - 501171 - g 79 -10.4 -3.786 | TGACAAAATTTGAAA GTTGGAAA ATT TTTCCAAC TAATAGAGGTAGGAA gcl 501155 - 502984 + | glyoxylate carboligase insB 503792 - 503289 - | IS1 ORF2 ylbA 504686 - 504015 - | hypothetical protein TERM 656 504375 - 504401 + g 77 -10.2 -3.59087 | AAGATAGCCACCTTC GCTTAAGGCAAA TGT TTTGCCTTCGGC TTTGGCAGTGATATT ylbB 505986 - 504697 - | allantoate amidohydrolase TERM 657 505862 - 505847 - G 70 -6.1 -4.21141 | opp_overlap 505847 GGCGAATAAAGTAAA CGGGT CATCCC ACCCG TTGGGTCAGCGCCAA TERM 658 506326 - 506342 + G 81 -5 -5.1615 | ATGGCGCTTTAGATG CGCGCG CCGGT CGCCCG TTTTTTGCCTGTTCC ylbF 505992 - 506579 + | putative carboxylase TERM 659 506907 - 506923 + G 82 -7.9 -4.56597 | CGCGCATTGAGGTTT CGCCTGA TGA TCCGGCG TTTTTGCAGCCAGAG arcC 506576 - 507469 + | carbamate kinase purK 508673 - 507606 - | phosphoribosylaminoimidazole carboxylase ATPase subunit purE 509179 - 508670 - | phosphoribosylaminoimidazole carboxylase catalytic subunit ybbF 510019 - 509297 - | UDP-2,3-diacylglucosamine hydrolase TERM 660 509792 - 509778 - G 74 -6.4 -4.46212 | TTGCCGAGCAGAAAA TCACGG TTG CCATGA ATGAAATAACAGGGA TERM 661 509984 - 509949 - G 100 -12.7 -5.00616 | gap 1, opp_overlap 509958 TCCCCCGCTAAAAAA CGCAGAA-AACCGGCG GTGAT CGCCGGTTCTTCCACG CAGAGATGAAGATCT TERM 662 509958 - 509974 + g 85 -11.5 -3.61398 | opp_overlap 509949 AAAAAACGCAGAAAA CCGGCGG TGA TCGCCGG TTCTTCCACGCAGAG ppiB 510516 - 510022 - | peptidyl-prolyl cis-trans isomerase B (rotamase B) TERM 663 510273 - 510283 + g 72 -5.4 -4.58283 | GTGCCATTGCCAGCG TACC ACG GGTA TTTTTCAGGCCGTTG cysS 510690 - 512075 + | cysteinyl-tRNA synthetase TERM 664 512087 - 512110 + T 100 -16.8 -3.46602 | opp_overlap 512077 GTAATTGCGCAATTG CCGGATGCGA GTTT TCGCATCCGG TTATCGTCTGCGCCA ybcI 512620 - 512111 - | hypothetical protein TERM 665 512489 - 512473 - G 78 -5.1 -4.77036 | opp_overlap 512475 CGCGATGACCAAAAA CATTGCC GTA AGCAACG CCAAATTTAAACGAC TERM 666 512719 - 512698 - R 100 -15.9 -3.95836 | AGTCTGAAAAGAGAA CCGGCCTGT TGAT ACAGGCCGG GAAAGGGATCAGGCA ybcJ 512970 - 512728 - | hypothetical protein folD 513766 - 512942 - | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase TERM 667 512973 - 512987 + gH 72 -7.1 -4.18494 | opp_overlap 512971 512975 TCATGATATTCAACG CACGC CTGTA GCGTG TTTTCAATCAGCGTG TERM 668 513207 - 513224 + gH 70 -4.1 -4.72272 | AACAGATCGGCATTT TCTACGT GATG ACGCAGA TTTTTAGTGAAGCGG TERM 669 513958 - 513968 + H 73 -4 -4.75372 | TGAGGTCGCTGAGAT TGAA AGC TTCA TTTTTCGTACATGAT TERM 670 514439 - 514451 + G 70 -6.3 -4.23723 | GTCACACTCGGTCAA TATCG TAC CGATA TTTTCAATGCTGTTG sfmA 514289 - 514813 + | putative fimbrial-like protein insB 516689 - 516186 - | IS1 ORF2 SFV_0492 516764 - 516973 + | putative IS1 encoded protein TERM 671 517573 - 517563 - f 72 -8.2 -3.73072 | overlap 517564 AATGTTTTGATTAAA GCGC CTA GCGC AGGCGGTGTACGCAT sfmF 519076 - 519591 + | putative fimbrial protein SFV_0495 520546 - 519641 - | insertion element IS2 transposase InsD SFV_0496 520869 - 520504 - | insertion sequence 2 OrfA protein fimZ 521625 - 520945 - | transcriptional regulator FimZ TERM 672 521648 - 521671 + r 75 -9.6 -3.59262 | overlap 521652 CGGGTTTTCTTGATT CAGACGCGCA GCGG TGTGCGTTTG TTTGCCGCTATAGCG TERM 673 521652 - 521667 + r 77 -6.8 -4.43208 | overlap 521648 TTTTCTTGATTCAGA CGCGCA GCGG TGTGCG TTTGTTTGCCGCTAT TERM 674 521807 - 521777 - R 76 -11.8 -2.60079 | overlap 521787 TGACCGTATAATTCA CGCGATTACACCGC ATT GCGGTATCAACGCG CCCTTAGCTCAGTTG envY 522688 - 521927 - | envelope protein TERM 675 522862 - 522832 - R 86 -11.2 -3.727 | opp_overlap 522844, overlap 522834 CTGACGAGAGCGAAA GAGGTAAGCCAGGT CGT ACCCGACTTACCTG GAGGGGATTTAATAC TERM 676 522860 - 522834 - R 90 -13.8 -3.44487 | opp_overlap 522844, overlap 522832 GACGAGAGCGAAAGA GGTAAGCCAGGT CGT ACCCGACTTACC TGGAGGGGATTTAAT ybcH 523761 - 522871 - | hypothetical protein TERM 677 525957 - 525981 + r 78 -6.4 -4.72272 | gap 2, opp_overlap 525956 525960, overlap 525961 CTTCACTGCGACAAC GCAGGGTCGGCG CAG CGTCG-CCC-GC TTTTTGCTGGGCAAG TERM 678 526292 - 526277 - R 76 -4 -5.05116 | gap 1, opp_overlap 526290, overlap 526279 GGATAAATAACAAAA TG-GCGA TAA TCGCTCA GCCCCAGCTCTTCTG nfrB 528556 - 526394 - | bacteriophage N4 adsorption protein B TERM 679 527519 - 527503 - G 72 -5.1 -4.44797 | overlap 527495 CCAGCAACAGCAAAA GCTGG ATCATCA CCAGC ATCGCGAGGAAGCTG ybcZ 530223 - 528781 - | sensor kinase CusS ylcA 530896 - 530213 - | DNA-binding transcriptional activator CusR TERM 680 530427 - 530417 - G 82 -3.2 -5.24531 | overlap 530419 ATGGCGGAGAAAAAA CTCC AGC AGAG TAAATTCTTTACTGG TERM 681 530958 - 530979 + H 72 -6.7 -4.34402 | opp_overlap 530966, overlap 530957 ATGGCAATCGCTTAT TGGCAAAAT GACA ATTTTGTCA TTTTCCTGTCACCGG TERM 682 531946 - 531961 + H 80 -6.8 -4.65838 | overlap 531957 TAATGCTAATATTGG TGCTGC GCGT GCGGCA TTTTTCCCGTCTATC ylcC 532459 - 532791 + | periplasmic copper-binding protein SFV_0508 534742 - 534095 - | IS629 ORF2 TERM 683 534662 - 534674 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SFV_0509 535304 - 534978 - | IS629 ORF1 SFV_0510 535381 - 536601 + | putative bacteriophage protein SFV_0511 537355 - 536642 - | IS600 ORF2 SFV_0512 537798 - 537496 - | IS600 ORF1 TERM 684 538117 - 538132 + r 100 -11.8 -4.91084 | CATCTGATTATTTTA GGGGCC ATAT GGCCCC TTTTATTGTTCAATC TERM 685 538546 - 538535 - R 73 -2.2 -5.14965 | AGTGGCACCAAAAAA GAAC GCCA GTCC ACGCAAAGGATACAG SFV_0513 540416 - 539511 - | insertion element IS2 transposase InsD SFV_0514 540739 - 540374 - | insertion sequence 2 OrfA protein TERM 686 541582 - 541594 + G 87 -4.8 -5.19212 | overlap 541572 GGATTATTCGTCGCT CGGT GGCGA ACCG TTTTTTGGTGCTGAT ybdE 541557 - 544736 + | putative inner membrane component for iron transport TERM 687 545068 - 545103 + G 84 -11.2 -3.71873 | gap 1, opp_overlap 545079 CAGCTTGGCGAGATG GTGGTCGAA-GAGCCGG TAT CCGGTTCATTTGCCCAC TTTGCCTATAAATAC pheP 544837 - 546213 + | phenylalanine transporter TERM 688 546245 - 546271 + T 100 -16.7 -5.65513 | opp_overlap 546243 546242 546240 CCGACAAAACGATGT CCGCTCTCATC CATTC GATGAGAGCGG TTTTTTTAATTACTG ybdG 547528 - 546281 - | putative transport protein TERM 689 547628 - 547607 - R 82 -11.5 -3.61103 | overlap 547609 GAATCTGAGGGGAAA TAGCCGGGC AGAT GCCCGGCAA GAGAGAATTACACTT TERM 690 547626 - 547609 - R 90 -14.1 -3.38224 | overlap 547607 ATCTGAGGGGAAATA GCCGGGC AGAT GCCCGGC AAGAGAGAATTACAC nfnB 548289 - 547636 - | dihydropteridine reductase ybdF 548751 - 548383 - | hypothetical protein ybdJ 549064 - 548816 - | hypothetical protein ybdK 550248 - 549130 - | carboxylate-amine ligase TERM 691 549820 - 549807 - G 82 -8.1 -4.49556 | CGTGCAGCAAATAAA TGGCG TCAT CGCCA CTGGCACAGCCAACA TERM 692 550034 - 550024 - G 70 -6.8 -4.09685 | opp_overlap 550027 CTGCATCGCTGAAAA CTGC CCG GCAG CCTGGTTGATATCAC TERM 693 550852 - 550836 - g 76 -3.7 -4.92363 | AAACATGGAGAAAAA GGTTTAA TTC CCAAACC TAAAGGCGTTAGTGC SFV_0522 550680 - 551162 + | IS150 ORF1(ORF A) SFV_0523 551872 - 551159 - | IS600 ORF2 SFV_0524 552789 - 552142 - | IS629 ORF2 TERM 694 552709 - 552721 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SFV_0525 553351 - 553025 - | IS629 ORF1 SFV_0526 553624 - 553403 - | IS600 ORF1 TERM 695 554607 - 554575 - g 100 -13.6 -4.55128 | opp_overlap 554575 AGCCTGAAATTAAAA GGTCTGACTCCAAT TGAAT ATCGGAATCAGACC TATATGCCTCGTGTA SFV_0527 553774 - 554625 + | IS150 ORF2 TERM 696 554656 - 554696 + T 72 -9.2 -3.65046 | gap 1 GGGTCAGTACACCCT GGGGCTGCCACTCCAAA CCAGACAA TTTGGA-TGGTAGTCCC TTCTTCGCATGGAGG TERM 697 554875 - 554906 + T 71 -10.8 -2.59564 | opp_overlap 554874, overlap 554875 GAACCGAAGAAGTAG CCGTTGTGCGGGGA GTAA TCCCCGCATATCCG GTTGTCAGGTCAGGA TERM 698 554875 - 554907 + T 77 -10.6 -3.32963 | gap 1, opp_overlap 554874, overlap 554875 GAACCGAAGAAGTAG CC-GTTGTGCGGGGA GTAA TCCCCGCATATCCGG TTGTCAGGTCAGGAT TERM 699 554946 - 554975 + T 100 -17.9 -4.19735 | ACCTGCTTTACACTT TCGCCCGCGGTCA GTGA TGGCTGCGGGCGA TTTCGTTTTAAGAGC TERM 700 555378 - 555409 + T 71 -10.8 -2.59564 | opp_overlap 555377, overlap 555378 GAACCGAAGAAGTAG CCGTTGTGCGGGGA GTAA TCCCCGCATATCCG GTTGTCAGGTCAGAG TERM 701 555378 - 555410 + T 77 -10.6 -3.32963 | gap 1, opp_overlap 555377, overlap 555378 GAACCGAAGAAGTAG CC-GTTGTGCGGGGA GTAA TCCCCGCATATCCGG TTGTCAGGTCAGAGT entD 556269 - 555499 - | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex TERM 702 555842 - 555825 - G 73 -9.1 -3.59979 | TCGGTTGACGGGAAA CCACGGC CAAT GCCGTAG CCCCGCAGTGGCTAA TERM 703 556263 - 556234 - G 100 -17.9 -3.30124 | opp_overlap 556231 556228, overlap 556216 TTGTAGGCCGGATAA GGCGTTCACGCCG CATC CGGCGTGAACGAC GCGCACTTTGTCAAC fepA 558534 - 556294 - | outer membrane receptor FepA TERM 704 556657 - 556688 + g 77 -2.9 -5.11836 | gap 1, overlap 556660 TGAGTTCAACGTGTA CTCCGGGATGATCG ACAAA CGGTCG-CCCGTGG TTTTGTTTTCACTCT TERM 705 558339 - 558352 + g 70 -3.7 -4.64657 | TGATCTCCGACACAT CGCGG GCAA CCGGG TTTTTGCGGATTTCA TERM 706 559042 - 559052 + G 72 -6.8 -4.15044 | ATGCCAACTGGCGCG GCAG CTA CTGC TTTATTCCCACCGAA TERM 707 559149 - 559131 - g 77 -8.2 -4.08692 | GAAGGCTGGCGAAAA CTATTACC CCA GGCAATAG CCGATCCGCTGAATC fes 558777 - 559979 + | enterobactin/ferric enterobactin esterase ybdZ 559982 - 560200 + | putative cytoplasmic protein TERM 708 561627 - 561611 - g 95 -10.1 -4.64144 | overlap 561602 AACAAGCGGCAAAAA CACCGGA TGC TCCGGCG CTGGCAGATGCGCGT TERM 709 561723 - 561756 + G 72 -4.5 -4.59773 | gap 1, overlap 561726 CGGCGTTAAACCAGG GGAC-AGCGTGGCGGT GGC ACTACCACGCTCGGTC TTTTTGACCCTGGCA TERM 710 562475 - 562487 + G 70 -6.9 -4.07687 | CGGCGGTAGATGTCA GCTGG TAT CCGGC TTTTGGCGAGGAACT TERM 711 563425 - 563435 + G 78 -8.2 -4.18762 | CTGTTTTGTTTCCAT CCGG CGT CCGG TTTTGCCTGGCAGTT entF 560197 - 564090 + | enterobactin synthase subunit F SFV_0533 564293 - 564102 - | putative IS1 encoded protein insB 564368 - 564871 + | IS1 ORF2 TERM 712 564885 - 564911 + T 100 -8.2 -5.85425 | AAGTTGGAGTCATTA CCCATAATTA CAGAAAA TAATTATGGG TTTTTTATTTGTTTG fepC 567027 - 566212 - | iron-enterobactin transporter ATP-binding protein fepG 568016 - 567024 - | iron-enterobactin transporter permease TERM 713 567808 - 567782 - G 95 -10 -4.67353 | overlap 567783 TCAGCGACTGAAAAA TCGCGCCGCTGA CGC CCAGCGCCGCGC CAATCAACAGCGCCA TERM 714 567807 - 567783 - G 89 -13.5 -3.3993 | overlap 567782 CAGCGACTGAAAAAT CGCGCCGCTGA CGC CCAGCGCCGCG CCAATCAACAGCGCC fepD 569017 - 568013 - | iron-enterobactin transporter membrane protein ybdA 569128 - 570360 + | enterobactin exporter EntS fepB 571320 - 570364 - | iron-enterobactin transporter periplasmic binding protein TERM 715 573476 - 573532 + G 77 -10.2 -3.6761 | gap 2, opp_overlap 573467 573465, overlap 573477 573521 AACAGACGCGCTACC TGTGC-GCGATCCCGGCGG-CTCATAAC TAC GCTATGAGTTCGCCAGGATCGCTGGGCG TCTTTCTTGCCGGAG TERM 716 573477 - 573531 + G 73 -11.5 -2.80244 | gap 2, opp_overlap 573467 573465, overlap 573476 573521 ACAGACGCGCTACCT GTGC-GCGATCCCGGCGG-CTCATAAC TAC GCTATGAGTTCGCCAGGATCGCTGGGC GTCTTTCTTGCCGGA TERM 717 574007 - 574022 + G 71 -3.2 -4.87626 | AGCACAATGCCAGTG CCTTTG ATGC CAACGG TTTTTACTGTTCCGG TERM 718 574392 - 574372 - g 70 -3.9 -4.72201 | overlap 574375 GTCGATAAAAAACAA TTACGTCAG TGG CTGGCGTCA CGCGCATCAGCCTGA entE 572797 - 574407 + | enterobactin synthase subunit E entB 574421 - 575278 + | 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase TERM 719 575334 - 575349 + G 70 -6.1 -4.15044 | TAAAGGTATCGGCTA CGCCA CGGCGC TGGCG TTTGTTGAGGCGGGA entA 575278 - 576024 + | 2,3-dihydroxybenzoate-2,3-dehydrogenase ybdB 576027 - 576440 + | hypothetical protein TERM 720 578093 - 578105 + G 72 -6.9 -4.19177 | overlap 578092 GGTAGATGCGGGTAC GCGTG CTG CGCGC TTTATGTTGCAGGAT cstA 576621 - 578726 + | carbon starvation protein ybdD 578908 - 579105 + | hypothetical protein ybdH 580203 - 579115 - | hypothetical protein TERM 721 580975 - 581002 + G 72 -6.2 -4.39696 | opp_overlap 580951 AGTGTGCTGGCGCAT CCGCAGCTGC GTGAGCGG GCAGTGGCGG TTTCTTCATTTGGCA TERM 722 581439 - 581467 + G 72 -8.2 -3.81137 | gap 1 GAAGGAATCGACGTT GCTGGCAGCAG CTGAACGC CTGC-GCCAGC TTTAGCTATTTAACC ybdL 580312 - 581472 + | putative aminotransferase ybdM 581964 - 581473 - | hypothetical protein SFV_0551 582831 - 581992 - | IS911 ORF2 TERM 723 582400 - 582411 + g 77 -5.8 -4.63218 | opp_overlap 582396 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SFV_0552 583160 - 582858 - | IS911 ORF1 SFV_0553 583821 - 583327 - | hypothetical protein SFV_0554 584304 - 583894 - | hypothetical protein SFV_0555 584410 - 584688 + | ISEhe3 orfA SFV_0556 584745 - 585557 + | ISEhe3 orfB TERM 724 585849 - 585865 + T 73 -4.5 -4.86621 | ATAAAGTAAACACTG TAAAGCA GAG TGTTTTA TTTTTCATTCGCGCT ybdO 586828 - 585926 - | putative transcriptional regulator LYSR-type dsbG 587844 - 587038 - | disulfide isomerase/thiol-disulfide oxidase TERM 725 588231 - 588209 - g 88 -8.4 -4.67353 | CCAGGCATTCAAAAA CGGCGAATTC ATC GAAATCACCG AAAAAGATACCGAAG ahpC 588156 - 588719 + | alkyl hydroperoxide reductase subunit C TERM 726 588857 - 588876 + F 100 -13.6 -4.63218 | AATTCACCTAATTCT TCGGGTGC TGCG GCACCCGA TTTTCTTCCCCGCAC TERM 727 589008 - 588991 - g 72 -9.9 -3.41195 | AATATGAAAACTCAA CTCAAGG CTTA CCTTGAG AAATTGACCAAGCCT ahpF 588964 - 590529 + | alkyl hydroperoxide reductase subunit F TERM 728 590560 - 590583 + T 100 -13.1 -5.27923 | opp_overlap 590575, overlap 590574 ACCTGCAATTGCTTA GCCGCCGGG GTCAAA CCTGGCGGC TTTTTTATGGCATTA TERM 729 590629 - 590603 - T 100 -18 -4.7373 | opp_overlap 590574 590596 590595, overlap 590575 TTATGGCATTAAAAA GCCCTGCCGGGA TGT TCCAGGCAGGGC GGCATAAATACTTTT ybdQ 591078 - 590650 - | hypothetical protein ybdR 591299 - 592537 + | putative oxidoreductase TERM 730 592733 - 592714 - T 88 -12.2 -3.53811 | CTGATTTTGCGTAAA GAGGATGC GAGT GCATCCTC TGGGCAAAGCGAGTT rnk 593178 - 592768 - | nucleoside diphosphate kinase regulator TERM 731 593258 - 593236 - R 100 -12.7 -5.11836 | opp_overlap 593236 ATACCCAAAAGAAAA CCCTCACCG TCAGG CGGCGAGGG TTTAACTCACATGAT TERM 732 593236 - 593258 + r 86 -11.2 -3.6608 | opp_overlap 593236 ATACCCAAAAGAAAA CCCTCACCGT CAG GCGGCGAGGG TTTAACTCACATGAT rna 594231 - 593407 - | ribonuclease I TERM 733 594191 - 594177 - G 77 -8.5 -4.13872 | overlap 594168 AGGGAAGCAGAGAAA CCGCG AGCAA CGCGG CGTTACGGCAGAATG TERM 734 594261 - 594302 + r 73 -7.9 -4.19371 | opp_overlap 594268, overlap 594264 CTATCTATTAAATCA TAAAAAAGCCCGCCAGGTG GGCT TACCTGGCGGGCGTGATGA TTTATTCAGCGTTTG TERM 735 594264 - 594299 + r 70 -9.6 -3.10512 | opp_overlap 594268, overlap 594261 TCTATTAAATCATAA AAAAGCCCGCCAGGTG GGCT TACCTGGCGGGCGTGA TGATTTATTCAGCGT TERM 736 594295 - 594268 - R 100 -18.5 -5.42265 | opp_overlap 594264 594261 TTAAATCATAAAAAA GCCCGCCAGGT GGGCTT ACCTGGCGGGC GTGATGATTTATTCA ybdS 595790 - 594327 - | putative a membrane protein TERM 737 595308 - 595292 - G 77 -6.5 -4.64598 | opp_overlap 595298, overlap 595263 595293 TAATGACCGGAAAAA CCGTACC CCC GGTACGC GCGGTGTTGGACGGT TERM 738 595307 - 595293 - G 72 -10 -3.38036 | opp_overlap 595298, overlap 595263 595292 AATGACCGGAAAAAC CGTACC CCC GGTACG CGCGGTGTTGGACGG TERM 739 595503 - 595523 + g 70 -3.9 -4.62471 | GCTGGAAAAACCAGC CAGGCCC CATTTCA GCGCCTG TTTTTGCGCATTAAA citG 596719 - 595841 - | triphosphoribosyl-dephospho-CoA synthase TERM 740 595952 - 595969 + gr 78 -6.2 -4.63928 | ATAATCGAGATCGGT GGGGGT TCGAAT GCCCCC TTTTTGCAATAATGT citX 597245 - 596694 - | 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase TERM 741 596779 - 596794 + gr 83 -10.4 -3.72576 | TGGGTTTTTCCACGC GCGCAG ACGG CTGCGC TTTGCTCGCACAACA citF 598823 - 597249 - | citrate lyase alpha chain citE 599700 - 598792 - | citrate lyase beta chain (acyl lyase subunit) citD 599993 - 599697 - | citrate lyase subunit gamma TERM 742 600654 - 600643 - R 80 -7.2 -4.58395 | opp_overlap 600650, overlap 600645 GTCAGCGTGGAAAAA CCGC ACTG GCGG AACAGCGCCTCGTAT TERM 743 600902 - 600916 + r 95 -2.7 -6.14618 | overlap 600903 TTTCATGCAGGAATT GGGCG ATTTC CGCCA TTTTTTTATTTTCTG TERM 744 600903 - 600915 + r 72 -6.2 -4.25111 | overlap 600902 TTCATGCAGGAATTG GGCG ATTTC CGCC ATTTTTTTATTTTCT TERM 745 600996 - 601043 + r 75 -2.9 -5.13343 | gap 1, overlap 600997 CCTGAAGGTGCATGT TGTTATCGATTTGCAACGAATG TTGTT CAAT-GTTGCAAACTGATAACC TTTTATTTTCACTTG TERM 746 601120 - 601132 + r 72 -4.9 -4.72863 | ACATCCTAAGGAGTA TTTCA GCG TGAAA TTTTGATTTATTTCA insB 601767 - 601264 - | IS1 ORF2 SFV_0573 601881 - 602594 + | putative integrase ybhA 602728 - 603648 + | phosphotransferase TERM 747 603636 - 603656 + T 71 -9.7 -3.2964 | CCAGTTCATTTATAG CCACCTGAT TTA ATCAGGCGG TTATCGACACACTTT modC 604707 - 603649 - | molybdate transporter ATP-binding protein modB 605399 - 604710 - | molybdate ABC transporter permease protein TERM 748 605012 - 604994 - G 79 -4.4 -4.97158 | overlap 604995 TGATAGTAAAGAAAA CGCGCCAG CGC CCGGCACC TAGTGTTCTTGCGGC modA 606172 - 605399 - | molybdate transporter periplasmic protein TERM 749 605547 - 605557 + g 72 -6.8 -4.17491 | GAATCTTCCGGGAAG GTGG CAA CCAC TTTTACCCCTTTGCT TERM 750 606329 - 606312 - R 100 -8.4 -5.35224 | TTGAGAAAAAGAAAA TGCCCG ACTAAG CGGGCA TTCAGGGAATCAATG SFV_0578 606488 - 606339 - | hypothetical protein TERM 751 607315 - 607299 - g 81 -10.9 -3.57462 | TACCCGACGGGCAAA CACTGTG CGC CACAGTG CCGGTAAATGAAGCG modE 606617 - 607405 + | DNA-binding transcriptional regulator ModE TERM 752 607912 - 607937 + G 86 -11.1 -3.90559 | opp_overlap 607904 GAAAAACCCTGCTGT GTCAGGCGCTG ATGT CGGAGCCTGAC TTGTTGATTCTTGAT modF 607473 - 608945 + | putative molybdenum transport ATP-binding protein ModF TERM 753 609718 - 609701 - g 70 -4.1 -4.60041 | gap 1, overlap 609702 609703 ACCGACCTGCAAAAA GC-CCAGC CGG ACTGGAGC ATTGCCCTGCTGCGC TERM 754 609968 - 609953 - g 77 -6.1 -4.65895 | GTGGCGATGGAAAAA CTGGC GAACAA GCCAG GCGTACACATCTACA galE 609206 - 610222 + | UDP-galactose-4-epimerase TERM 755 610445 - 610429 - g 81 -6.5 -4.8667 | overlap 610430 GACAGGCGATAAAAA CCCCGAT TAC ACCGGGA CTTACGTTTTCACTA galT 610232 - 611278 + | galactose-1-phosphate uridylyltransferase galK 611282 - 612430 + | galactokinase galM 612424 - 613464 + | aldose 1-epimerase TERM 756 613471 - 613487 + F 87 -10.1 -4.27467 | GCTGAGTAATGTTAA GCCCTCG TCA TGAGGGC TTTATCTTCATATTG TERM 757 613799 - 613784 - g 74 -6.1 -4.45664 | overlap 613785 GTAAGCGAAGCAAAA GCAGC AGGTAA GCTGC TGAAAGAGGAAGGTT gpmA 613667 - 614419 + | phosphoglyceromutase TERM 758 614446 - 614466 + T 100 -8.3 -5.73978 | opp_overlap 614446 TTAAAAAATGAGAAA GCCGACT GCAAGTG AGTCGGC TTTTTTGTTTGTCGT TERM 759 614466 - 614446 - T 79 -8.3 -4.3179 | opp_overlap 614446 TTAAAAAATGAGAAA GCCGACT GCAAGTG AGTCGGC TTTTTTGTTTGTCGT TERM 760 614501 - 614533 + T 79 -12.7 -2.87136 | opp_overlap 614500 614495, overlap 614510 614511 AACAATGGAGCACAT TGCCTGATGCGACGC TGC GCGTCTTATCAGGCC TGTGGTGATTCATCG TERM 761 614511 - 614523 + T 70 -9.1 -3.30771 | opp_overlap 614500 614495, overlap 614510 614501 CACATTGCCTGATGC GACGC TGC GCGTC TTATCAGGCCTGTGG aroG 615638 - 614586 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 762 615775 - 615763 - H 77 -3.3 -5.16071 | AATTAGCAAGAAAAA CGCCA GAT TGTCG CGAAAAACGAGATCT SFV_0587 615954 - 616334 + | putative homeobox protein TERM 763 616356 - 616375 + F 93 -9.3 -4.78661 | opp_overlap 616355 616356 AAAATAGCCAATAAT GGGAGAG CGGAGT CTCTCCC TTTTAATTTTTCACT TERM 764 616743 - 616754 + G 70 -4.4 -4.53034 | overlap 616731 ATGCCATCGCCCTCG TGGT AATT ACCA TTTTGATTGTCTGGG ybgR 616448 - 617389 + | zinc transporter ZitB TERM 765 617395 - 617425 + T 100 -15.5 -3.15544 | opp_overlap 617391 TCACCATTAATGGGA CAGCGCGCGTGAG CCTCT TTCACGTGCGCTG TTGATCCACATCCGG pnuC 618105 - 617386 - | PnuC protein nadA 619186 - 618143 - | quinolinate synthetase TERM 766 619401 - 619433 + r 71 -9.9 -3.19463 | opp_overlap 619402 619410, overlap 619402 619410 TGAGGATGCCTGAAT AGCAAAAAAGCGCCT TTA GGGCGCTTTTTTACA TTGGTGGGTCGTGCA TERM 767 619402 - 619432 + r 80 -13.4 -2.51464 | opp_overlap 619402 619410, overlap 619401 619410 GAGGATGCCTGAATA GCAAAAAAGCGCCT TTA GGGCGCTTTTTTAC ATTGGTGGGTCGTGC TERM 768 619432 - 619402 - R 88 -14.9 -3.03441 | opp_overlap 619402 619401 619410, overlap 619410 GAGGATGCCTGAATA GCAAAAAAGCGCC TTTAG GGCGCTTTTTTAC ATTGGTGGGTCGTGC TERM 769 619410 - 619424 + r 100 -9.2 -5.17576 | opp_overlap 619402 619410, overlap 619402 619401 CTGAATAGCAAAAAA GCGCCT TTA GGGCGC TTTTTTACATTGGTG TERM 770 619424 - 619410 - R 100 -8.5 -5.27779 | opp_overlap 619410 619402 619401, overlap 619402 CTGAATAGCAAAAAA GCGCC TTTAG GGCGC TTTTTTACATTGGTG TERM 771 619670 - 619685 + r 72 -9 -3.52941 | CTCGCCCTTCGGCGC CGTTGC TGAT GCAACG TTATCCTTCACGTTT TERM 772 619922 - 619957 + r 70 -9.1 -3.4285 | opp_overlap 619926, overlap 619924 GCTTATGATTCGCAC GACACGACCAGAAAT AATGCG ACTTCTGGTCGTGTG TTATGCATTACATCG TERM 773 619924 - 619955 + r 79 -11.7 -3.28368 | opp_overlap 619926, overlap 619922 TTATGATTCGCACGA CACGACCAGAAAT AATGCG ACTTCTGGTCGTG TGTTATGCATTACAT TERM 774 619953 - 619926 - R 72 -10.7 -2.79302 | opp_overlap 619924 619922 ATGATTCGCACGACA CGACCAGAAAT AATGCG ACTTCTGGTCG TGTGTTATGCATTAC ybgF 620756 - 619965 - | hypothetical protein TERM 775 620504 - 620517 + g 70 -5.3 -4.29738 | GCTCCACGACCTGAT TCAGT TGAT ACTGA TTTTCCTGAATCTGA TERM 776 620702 - 620686 - G 100 -15.1 -4.25104 | GGTGCCTGAGCAAAA GCGGCCC AGT GGGCCGC TATACCAACCAGTAA pal 621287 - 620766 - | peptidoglycan-associated outer membrane lipoprotein tolB 622614 - 621322 - | translocation protein TolB tolA 623988 - 622747 - | cell envelope integrity inner membrane protein TolA TERM 777 623132 - 623160 + g 100 -13.1 -4.63527 | opp_overlap 623129, overlap 623130 623129 623138 623153 CCGAAAATATCATCT GCCTCTGCGGCAG CTT TTGCTGCAGCGGC TTTTTCAGCTGCTGC TERM 778 623138 - 623190 + g 100 -8.2 -5.36441 | opp_overlap 623129, overlap 623130 623129 623132 623153 623179 623183 ATATCATCTGCCTCT GCGGCAGCTTTTGCTGCAGCGGCT TTTTC AGCTGCTGCTTTTGCCGCTGCCGC TTTTTTGTCTGCGGC TERM 779 623153 - 623175 + g 91 -11.3 -4.11216 | overlap 623132 623138 GCGGCAGCTTTTGCT GCAGCGGCT TTTTC AGCTGCTGC TTTTGCCGCTGCCGC TERM 780 623183 - 623208 + g 85 -6.8 -4.84359 | overlap 623138 623179 623201 GCTGCTGCTTTTGCC GCTGCCGC TTTTTTGTCT GCGGCGGC TTTTTCTGCCGCTGC TERM 781 623201 - 623223 + g 90 -9.8 -4.32177 | overlap 623179 623183 623216 GCCGCTTTTTTGTCT GCGGCGGC TTTTTCT GCCGCTGC TTTCTTATCAGCTGC TERM 782 623252 - 623268 + g 88 -5.1 -5.26316 | overlap 623234 623233 GCTGCCTTATCAGCT GCAGC CTTTTCT GCTGC TTTTTTGTCGGCTGC TERM 783 623279 - 623301 + g 72 -6.2 -4.32177 | overlap 623277 623293 623294 GCTGCTTTTTTGTCG GCTGCAGC TTTCTCT GCTGCCGC TTTCTTATCAGCTGC TERM 784 623399 - 623424 + g 70 -4.5 -4.46854 | overlap 623397 623366 TTCTTTCTTGCTTCA GCTGCAGCTGC TTCT GCCGCTTCCGC TTTCTTCTTCAGTGC TERM 785 623441 - 623457 + g 84 -3.5 -5.27923 | TTCTTCTTCAGTGCC GCAGCGG CTA CCTCGGC TTTTTTCTGCGCTTC TERM 786 623618 - 623635 + g 74 -3.4 -4.93296 | gap 1, overlap 623620 AACTCGGCCTGTTTT GC-GGCT TCTTC AGCCTGC TTTTTCTGCTCCTGA tolR 624481 - 624053 - | colicin uptake protein TolR tolQ 625168 - 624485 - | colicin uptake protein TolQ ybgC 625578 - 625174 - | acyl-CoA thioester hydrolase YbgC TERM 787 625707 - 625682 - R 82 -7.6 -4.63184 | opp_overlap 625683, overlap 625683 AAGGGAGCGTAAAAA TTTATGGGCC TGGAGC GGCCCATAAT TTTTTAAAGAGAATT TERM 788 625706 - 625683 - R 79 -11.1 -3.37188 | opp_overlap 625683, overlap 625682 AGGGAGCGTAAAAAT TTATGGGCC TGGAGC GGCCCATAA TTTTTTAAAGAGAAT TERM 789 625683 - 625706 + r 100 -11.1 -5.00884 | opp_overlap 625683 625682 AGGGAGCGTAAAAAT TTATGGGCC TGGAGC GGCCCATAA TTTTTTAAAGAGAAT ybgE 626021 - 625728 - | hypothetical protein TERM 790 625986 - 625959 - G 81 -12.1 -3.21595 | gap 1, opp_overlap 625964, overlap 625946 625964 AAGCGCCATCACGAA GGA-AAGCGCCC GCAGG GGGCGCTTGTCC ATTACCGCATACAAG TERM 791 625980 - 625964 - G 86 -10.8 -3.97042 | opp_overlap 625964, overlap 625946 625959 CCATCACGAAGGAAA GCGCCC GCAGG GGGCGC TTGTCCATTACCGCA TERM 792 625964 - 625980 + g 76 -10.8 -3.41878 | opp_overlap 625946 625964 625959 CCATCACGAAGGAAA GCGCCC GCAGG GGGCGC TTGTCCATTACCGCA cydB 627288 - 626149 - | cytochrome d terminal oxidase polypeptide subunit II cydA 628872 - 627304 - | cytochrome d terminal oxidase, polypeptide subunit I TERM 793 629666 - 629639 - R 90 -10.6 -4.23213 | overlap 629640 629664 TGTAGACCGAATAAA GCGTTCATGCCG TATC CGGCATGAACAA AGCGCCCTTTGTCAA TERM 794 629665 - 629640 - R 86 -14.1 -3.13446 | overlap 629639 629664 GTAGACCGAATAAAG CGTTCATGCCG TATC CGGCATGAACA AAGCGCCCTTTGTCA ybgG 632355 - 629722 - | alpha-mannosidase TERM 795 630024 - 630038 + g 71 -2.8 -4.77567 | CTTTGTTGAGCTTCA TCGCAT CCC ATGGGA TTTTGTTGTAACACT TERM 796 631312 - 631351 + g 79 -3.7 -5.08169 | gap 2, opp_overlap 631311, overlap 631311 631314 GATTTCGCGATGAAC TT-TG-TCACGACAGCAGC AGCC GATGCTGTCGTGGGCATGA TTTTTTAAGATCTCT TERM 797 631314 - 631348 + g 72 -10.1 -3.38726 | gap 1, opp_overlap 631311, overlap 631311 631312 TTTCGCGATGAACTT TG-TCACGACAGCAGC AGCC GATGCTGTCGTGGGCA TGATTTTTTAAGATC TERM 798 633191 - 633206 + H 76 -8.2 -4.03234 | opp_overlap 633190 633189 GTCCAGCCGCAAAGC CTGGCG CTAA CGCCGG TTTATCTGCCAGCGA farR 634459 - 635181 + | DNA-binding transcriptional repressor MngR TERM 799 635208 - 635191 - T 100 -11.3 -5.01535 | CGATAAGCACAAAAA GGCCATC ATAC GATGGCC AACCATGTCGAAACC sucD 636153 - 635284 - | succinyl-CoA synthetase subunit alpha sucC 637319 - 636153 - | succinyl-CoA synthetase subunit beta TERM 800 636248 - 636261 + g 76 -9.5 -3.73068 | CAGCCAGTTTCTTCG CGCCG AGTT CGGCG TTGTTACCTTCCAGA TERM 801 636651 - 636674 + g 77 -10.2 -3.59979 | opp_overlap 636653 ATCAGGCTGGCGGAA CAGGGCGTTG CCAT CAGCGCCCAG TTTGCCGTCGAGGCA TERM 802 636894 - 636914 + g 73 -4 -4.81249 | gap 1 AACTTTATGGATCAG GT-GCGGAG TTTC TTCCGCCAC TTTTTCGATTTCCAC TERM 803 637392 - 637358 - R 79 -10.8 -3.55444 | TCGTTATCTTTTAAA CCGTAGACCGACAC CCTATCC ACGTCGGTCTACAG TGCAGGTGAAGCTTA sucB 638630 - 637413 - | dihydrolipoamide acetyltransferase TERM 804 638083 - 638099 + g 70 -3.6 -4.67353 | ACACGCTTACGCAGG CGAGTC ATCGG GACACG TTTTTCACTACGTGC kgd 641446 - 638645 - | alpha-ketoglutarate decarboxylase TERM 805 640831 - 640843 + g 100 -7.7 -5.48063 | CAGCGGCGGTCAGTT CGCTT AAG AAGCG TTTTTTCTCTTCGCT TERM 806 640887 - 640903 + g 83 -5.1 -5.11063 | CGACCAGACTCGATA CGCTG TTGGATC CAGCG TTTTTCTTCGGTGCT TERM 807 641520 - 641565 + r 79 -10.5 -3.57387 | overlap 641564 TGATGCGCGTGCCAT GGTTCACTTGCGAGCTCTTGT CTAC ATAGTGGCTCGCGAATGAACC TTTAAGAACTGTCTT sdhB 642463 - 641747 - | succinate dehydrogenase iron-sulfur subunit sdhA 644245 - 642479 - | succinate dehydrogenase flavoprotein subunit TERM 808 643485 - 643532 + g 70 -11.2 -2.83299 | gap 1, overlap 643484 643521 CCACGGCAACCTTCG GTGACCAGTACGCCCGCACCGGC AAT GCCGGT-CGGGTGGAATTGCCAC ATTTCCATATCCTGC sdhD 644592 - 644245 - | succinate dehydrogenase cytochrome b556 small membrane subunit sdhC 644975 - 644586 - | succinate dehydrogenase cytochrome b556 large membrane subunit TERM 809 644876 - 644865 - G 70 -5.8 -4.1822 | GCCCACTGCAACAAA GGTG ATCA CACC GGAAACGCGATGGAG gltA 645684 - 646967 + | type II citrate synthase TERM 810 646994 - 647021 + F 100 -15 -4.99035 | opp_overlap 646993 646992 646990 TAAGTTGTAAATATT TTAACCCGCCGT TCAA ATGGCGGGTTAA TTTTTATATGCCTAA TERM 811 647072 - 647061 - f 73 -2.2 -5.27023 | ATTGTAAAAATAAAA TCCA CTAT CGGA CATTCATATATTCTA TERM 812 647140 - 647120 - f 74 -5.5 -4.65032 | opp_overlap 647120 647118 647122, overlap 647122 TAAATTATAAACAAA TAGATGATT TTT AATCATCTG TCTTCCTCTCAGTTA TERM 813 647138 - 647122 - f 74 -8.1 -3.91213 | opp_overlap 647122 647120 647118, overlap 647120 AATTATAAACAAATA GATGATT TTT AATCATC TGTCTTCCTCTCAGT TERM 814 647305 - 647289 - f 73 -2.3 -5.24003 | overlap 647291 AAGAAAAACTAAAAA CATTCGA CAA TCAAATA AGATATTCTTGCACC ybgD 647357 - 647923 + | putative fimbrial-like protein TERM 815 647934 - 647951 + G 100 -14.1 -3.76781 | AATAAGTATTACTTT GGCGGCG CTAT CGCCGCC TTTCATAAAATATTT TERM 816 648074 - 648097 + G 77 -8.2 -4.07618 | opp_overlap 648076, overlap 648076 TGAATGTTCTCGATA AATCAATGCG CGAC CGCATTGATA TTTCATTATTAAAGG TERM 817 648076 - 648095 + G 81 -10.8 -3.62957 | opp_overlap 648076, overlap 648074 AATGTTCTCGATAAA TCAATGCG CGAC CGCATTGA TATTTCATTATTAAA TERM 818 648095 - 648076 - g 86 -10.8 -3.86194 | opp_overlap 648076 648074 AATGTTCTCGATAAA TCAATGCG CGAC CGCATTGA TATTTCATTATTAAA TERM 819 648131 - 648118 - g 76 -3.8 -5.01811 | opp_overlap 648126 TTATTAAAGGAAAAA GGAG TCATTG CTCC CGGTGAGTATTTTGT TERM 820 649301 - 649291 - g 70 -6.8 -4.0648 | AATTACAGCAAACAA GTGG ATG CCAC TAACAGCACGATTTC ybgQ 647932 - 650433 + | putative outer membrane protein TERM 821 650747 - 650759 + G 71 -3.3 -4.8667 | AAAATTACCGGGCGA TCGCG AAA CGCTA TTTTTCTACAATATG ybgP 650448 - 651179 + | putative chaperone TERM 822 651555 - 651545 - g 72 -4.6 -4.7078 | CCAACCAGGGAAAAA GCCG CAT CGAC ACTAACCAGTGTATC ybgO 651512 - 652252 + | hypothetical protein TERM 823 652261 - 652288 + T 85 -12.8 -3.35522 | overlap 652259 TAACTGATTTGCCAT GATGCCCTTTGC AGCC GGAAAGGGCATC TCTTTCAGAAAATTG nei 654238 - 653447 - | endonuclease VIII ybgL 655008 - 654274 - | hypothetical protein TERM 824 654832 - 654815 - G 78 -8.5 -4.25104 | GCGCTGCGACCAAAA TTTTCCC TGTC GGGAAAA CTCGGGTGAGCGCCA ybgJ 656580 - 655924 - | putative carboxylase TERM 825 656348 - 656323 - G 72 -6.7 -4.20918 | opp_overlap 656323 CGGAATTTCAATAAA GCGAGACTCAG GTTC CAGGGCCTCGC TCTCCTCCCACCAGC ybgI 657346 - 656603 - | putative hydrolase-oxidase TERM 826 656805 - 656781 - G 70 -3.5 -4.71426 | gap 1, overlap 656785 656796 TCGCCAGTAATAAAA GCATCCACGC CAAAAC GCGCGG-CGC TATCGATAAAACTTT ybgH 657617 - 659098 + | putative transport protein TERM 827 659110 - 659151 + T 77 -10.2 -3.46936 | gap 1, overlap 659107 659145 ATAATAGGCCAGCAC CG-ATGCCTGATGCGACGC TTGAC GCGTCTTATCAGGCCTACG TATTTCCTGCAATTT phrB 660666 - 659248 - | deoxyribodipyrimidine photolyase TERM 828 659692 - 659702 + g 81 -8.2 -4.39571 | opp_overlap 659692 659691 AGCGGCATCAATAAT CGGG TAT CCCG TTTTGCCTTTCTGCC ybgA 661172 - 660663 - | hypothetical protein SFV_0629 661301 - 661588 + | hypothetical protein TERM 829 661626 - 661600 - T 100 -10.2 -5.32699 | opp_overlap 661600 TTAAATATTAAAAAA GCTGGGAAGATT TAA AACCTTCCTAGC TTTTTATTCTGTCTT TERM 830 661600 - 661626 + T 100 -10.2 -5.28561 | opp_overlap 661600 TTAAATATTAAAAAA GCTGGGAAGATT TAA AACCTTCCTAGC TTTTTATTCTGTCTT SFV_0630 666690 - 662026 - | putative Rhs-family protein TERM 831 666315 - 666354 + g 81 -9.8 -3.95022 | gap 1, overlap 666348 CCTGCGCCTCTATGT CCTGCCGCG-ATGCCGCAG TCG CCGCTGCCCGCGCGGCAGG TTTGCTGTTGATCCA SFV_0631 666909 - 666709 - | hypothetical protein insB 667809 - 667306 - | IS1 ORF2 SFV_0633 667884 - 668099 + | putative IS1 encoded protein TERM 832 668437 - 668408 - T 100 -13.7 -3.72009 | opp_overlap 668400 668402 668408, overlap 668402 668399 ATAATACGATGGAAA CGTCTTCCATGTT AATT ATCATGGAAGACG TTGATGTTGAACACC TERM 833 668408 - 668437 + T 90 -13.7 -3.36273 | opp_overlap 668402 668399 668408, overlap 668400 668402 ATAATACGATGGAAA CGTCTTCCATGTT AATT ATCATGGAAGACG TTGATGTTGAACACC TERM 834 668485 - 668451 - T 80 -12.2 -3.04144 | opp_overlap 668460, overlap 668457 CGTTGATGTTGAACA CCTAAACCAGCCCCCT GAT ACGAGGCTGGCTTAAG CGCGCAGGCAATCAG TERM 835 668479 - 668457 - T 79 -9.8 -3.76373 | opp_overlap 668460, overlap 668451 TGTTGAACACCTAAA CCAGCCCCCT GAT ACGAGGCTGG CTTAAGCGCGCAGGC ybfA 668703 - 668497 - | hypothetical protein TERM 836 668903 - 668914 + H 82 -5.8 -5.14894 | opp_overlap 668903 CCATCAGTTAAATCA TGGC CTTT GCCA TTTTTATACTTTTTT kdpA 669105 - 670754 + | potassium-transporting ATPase subunit A TERM 837 671483 - 671499 + F 73 -7.9 -4.11216 | overlap 671478 TCTTTTTACTGGCAA CCGCCAC GCT GTGGCCG TTTTCCGCGTGGGGC TERM 838 671787 - 671771 - f 73 -2.2 -5.14563 | gap 1, overlap 671772 GCGTGGATGAAAAAA CGCTGGC TGAC GCC-GCA CAACTGGCTTCGCTG TERM 839 672526 - 672543 + F 75 -9.9 -3.61517 | opp_overlap 672524 GCATTGCCAACGATG TGGCGAA ATAC TTCGCCA TTATTCCGGCGGCGT kdpC 672833 - 673405 + | potassium-transporting ATPase subunit C TERM 840 673728 - 673749 + F 76 -11.6 -2.66692 | opp_overlap 673728, overlap 673727 ATCTTAATGGACGAA CTGGCGCA CAGTAA TGCGCCAG GTTCTCGTCATCCTA TERM 841 673749 - 673728 - f 81 -12.3 -3.22091 | opp_overlap 673727 673728 ATCTTAATGGACGAA CTGGCGCAC AGTA ATGCGCCAG GTTCTCGTCATCCTA TERM 842 673873 - 673903 + F 70 -2.5 -5.08824 | gap 1, opp_overlap 673880, overlap 673877 TCAGCGGCGTCACCG GAATTCAGGTACGG GAAA CCGTGCCCG-ATCC TTTTTTCGATGCCGC TERM 843 673877 - 673900 + F 70 -8.8 -3.39842 | opp_overlap 673880, overlap 673873 CGGCGTCACCGGAAT TCAGGTACGG GAAA CCGTGCCCGA TCCTTTTTTCGATGC TERM 844 674739 - 674753 + F 74 -11.4 -2.82519 | overlap 674737 ATGGACGCTGGCCTT CGGTGG TTG CCACCG TCATTAATGTGGTGA kdpE 676153 - 676755 + | DNA-binding transcriptional activator KdpE SFV_0640 676911 - 676777 - | hypothetical protein TERM 845 678148 - 678162 + H 73 -7.8 -4.03234 | opp_overlap 678125 GAGCGTTGCTACAGG CTGGTG CAA CACCGG TTTATCTGGAAACGG potE 679639 - 680958 + | putrescine transporter TERM 846 680995 - 680976 - T 85 -5.6 -5.41359 | opp_overlap 680976, overlap 680978 AAGCAAAGTAAAAAA GGGCGATC TTGC GACCGCTC TTTTTTTATTAAATG TERM 847 680976 - 680995 + T 100 -5.6 -5.8187 | opp_overlap 680976 680978 AAGCAAAGTAAAAAA GGGCGATC TTGC GACCGCTC TTTTTTTATTAAATG pgm 682654 - 681014 - | phosphoglucomutase TERM 848 682619 - 682640 + g 78 -10.9 -3.42621 | opp_overlap 682614 AATCAAATCACTCTG TTGTGCAGG TTGG CCTGCACGA TTGTGGATTGCCATT seqA 683258 - 682680 - | replication initiation regulator SeqA TERM 849 683021 - 683003 - G 81 -11 -3.60151 | opp_overlap 683003 683002 CGTCCGAAAGCAGAA GTTCACGC ATT GCGCGAAC CTTGTCTTTAATCGT ybfF 683411 - 684175 + | hypothetical protein ybfE 684246 - 684608 + | LexA regulated protein fldA 684631 - 685278 + | flavodoxin FldA TERM 850 685284 - 685311 + F 100 -16.4 -3.19463 | overlap 685286 TAATGCCTGATGTGA TGCGGCGTAGAC TCAT GTCTACGCCGTA TTAATAGATAATGCC TERM 851 685286 - 685309 + F 100 -16.8 -3.15996 | overlap 685284 ATGCCTGATGTGATG CGGCGTAGAC TCAT GTCTACGCCG TATTAATAGATAATG fur 685568 - 686014 + | ferric uptake regulator TERM 852 686056 - 686029 - T 73 -11.4 -2.72463 | opp_overlap 686034, overlap 686034 AGCCAGCCTGAACGA GAAAAGCCAACC TGCG GGTTGGCTTTTT TATACAAGGGAAATA TERM 853 686051 - 686034 - T 95 -11.3 -4.5442 | opp_overlap 686034, overlap 686029 GCCTGAACGAGAAAA GCCAACC TGCG GGTTGGC TTTTTTATACAAGGG TERM 854 686034 - 686051 + T 100 -11.3 -5.24129 | opp_overlap 686034 686029 GCCTGAACGAGAAAA GCCAACC TGCG GGTTGGC TTTTTTATACAAGGG TERM 855 686097 - 686078 - T 80 -5.7 -5.011 | opp_overlap 686078 686075 686080 AGGGAAATAAGAAAA GCGAGAG TTACAG CTCTCAC TTATTTGTTATTACT ybfN 686442 - 686098 - | hypothetical protein ybfM 687867 - 686461 - | hypothetical protein TERM 856 686754 - 686767 + g 81 -6.7 -4.63527 | CGCCGATGGCGAAGC CTGGA AGAT TCCAG TTTTTCAGGTCATAC TERM 857 687017 - 687035 + g 72 -6 -4.37886 | opp_overlap 687012 CCGTCATAAAGATCG TTGACGCT GCG ATCGTCAA TTTTATCGCGGGTAC TERM 858 688245 - 688229 - R 100 -11.5 -5.4588 | opp_overlap 688229 GAAAAGCAGAAAAAA CGCCGCA GAG CGCGGCG TTTGGGATTGTTTGC TERM 859 688229 - 688245 + r 83 -10.8 -3.74238 | opp_overlap 688229 GAAAAGCAGAAAAAA CGCCGC AGAGC GCGGCG TTTGGGATTGTTTGC glnS 690110 - 688446 - | glutaminyl-tRNA synthetase TERM 860 689082 - 689094 + g 86 -9.1 -4.42639 | opp_overlap 689075 689076, overlap 689076 ATCGATAACCGCCAT TGCGC GCG GCGCA TTTTCGTTGAGATCT TERM 861 690171 - 690184 + r 75 -3.1 -5.10029 | TATAAGCGGGACAGG CTGAC AACT GTTAG TTTTTTAAAATTGAT TERM 862 690262 - 690240 - R 100 -12 -6.15828 | opp_overlap 690240 TTGATGAAAAAAAAA GCGGCAGAGA AGA TCTCCACCGC TTGTCATTGTTGGAT nagE 692259 - 690313 - | N-acetyl glucosamine specific PTS system components IIABC TERM 863 692204 - 692182 - G 74 -11.2 -3.1886 | overlap 692173 ACCGAATCGCAGCAA CAGCGCCGCC ACC GGCAGCACCG CGATAGGGAGCTGTA TERM 864 692978 - 692965 - g 100 -6.7 -5.52023 | AGTATGAAGAAAAAA TCCGT TCTT ACGGA AAAATTCATCTGTTT nagB 692592 - 693392 + | glucosamine-6-phosphate deaminase TERM 865 694077 - 694064 - g 72 -4.5 -4.62203 | gap 1 TTGAAAGAAGCAAAA GC-CGG TTT CCGCGC GGGGATTACCTTTGC TERM 866 694247 - 694235 - g 73 -9.1 -3.66356 | ATTCGTAACGCTAAA CGCCT TAA AGGCG ACAAACTGTGTCTGG TERM 867 694297 - 694307 + G 70 -4 -4.59773 | AGCAGGTGCCAACAT TGAA CAG TTCA TTTTTGCGGGTAAAA nagA 693452 - 694600 + | N-acetylglucosamine-6-phosphate deacetylase nagC 694609 - 695829 + | transcriptional repressor of nag (N-acetylglucosamine) operon nagD 695877 - 696629 + | UMP phosphatase TERM 868 696658 - 696633 - f 82 -13.3 -3.06162 | opp_overlap 696637 GACGTTATCTGAATA CCACCCACGTC TGCG GACGTGGTTGG CTCTGATGACAAACG TERM 869 696637 - 696654 + F 77 -11.3 -3.14468 | opp_overlap 696633 TTATCTGAATACCAC CCACGTC TGCG GACGTGG TTGGCTCTGATGACA TERM 870 696955 - 696969 + F 95 -7.8 -5.40072 | overlap 696947 696947 ATAGCTTGCGCACAG TGCTGC TTT GCGGCA TTTTTTTAAACAAGC TERM 871 698326 - 698316 - g 71 -3.2 -4.87318 | overlap 698318 GGCAAAATGGAAAAA CACA TCC TGCG TGAATGTTTTGAGTC asnB 697026 - 698690 + | asparagine synthetase B TERM 872 698702 - 698725 + T 100 -13.8 -4.56133 | opp_overlap 698697, overlap 698704 GTAAGAAATGCGGTA CTGCCCCGGA GAAA TCCGGGGCTG TTTTAGTTATTGCGC TERM 873 698704 - 698723 + T 100 -15 -3.88577 | opp_overlap 698697, overlap 698702 AAGAAATGCGGTACT GCCCCGGA GAAA TCCGGGGC TGTTTTAGTTATTGC TERM 874 699591 - 699580 - T 73 -4.4 -4.81249 | CGGCAAATTCAAAAA CCAA TTTG TTGG GGTATCGCCAAGCGG TERM 875 699780 - 699807 + T 77 -11.4 -3.28209 | opp_overlap 699786, overlap 699786 TACCCCAGCCACATT AAAAAAGCTCGC TTCG GCGAGCTTTTTG CTTTTCTGCGTTCAT TERM 876 699801 - 699786 - T 100 -10.4 -5.22312 | opp_overlap 699786 699780 AGCCACATTAAAAAA GCTCGC TTCG GCGAGC TTTTTGCTTTTCTGC TERM 877 699786 - 699801 + T 100 -10.4 -5.1417 | opp_overlap 699786, overlap 699780 AGCCACATTAAAAAA GCTCGC TTCG GCGAGC TTTTTGCTTTTCTGC ubiF 701104 - 699929 - | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 878 701599 - 701622 + G 72 -10.2 -3.39505 | gap 1, opp_overlap 701597 701598 CGGAGATGATCAACT CCGTGC-GCGG CGA CCGCAGCCCGG TTGTAGATATCAGCT TERM 879 702620 - 702607 - g 72 -8.1 -3.89346 | TGCGCATGGCAGAAA CACCG GAGT CGGTG ATTGCCCGCACCCGC yleA 701250 - 702674 + | hypothetical protein TERM 880 702679 - 702704 + F 100 -9.7 -5.51046 | gap 1, overlap 702681 ATCAGCCGTAATTCT CA-GGCCTGCCG TTC CGGTGGGCCTTG TTTTTTCTCTCTTTA TERM 881 702681 - 702701 + F 100 -12.5 -4.78477 | overlap 702679 CAGCCGTAATTCTCA GGCCTGCCG TTC CGGTGGGCC TTGTTTTTTCTCTCT TERM 882 703188 - 703169 - g 82 -9.2 -4.26292 | overlap 703184 AATATCAAAACTAAA CGCGGCGT AATT AAGCCGCG CACGCCAAACCAGGC ybeZ 702827 - 703867 + | putative ATP-binding protein in pho regulon TERM 883 703923 - 703908 - g 73 -9 -3.67611 | GGCATGTGAAGATAA TTCCGG GTTA CCGGAA GAGAGCCAGTTTCAA ybeY 703864 - 704331 + | putative metalloprotease TERM 884 704362 - 704385 + F 86 -8.8 -4.43477 | overlap 704356 704361 ACTGGCAGACGTCCC CGCCGTTGGT GATT AACGACGGCG TTTTGATTAACTAAC ybeX 704421 - 705299 + | putative transport protein TERM 885 705348 - 705374 + G 81 -10.2 -3.97307 | gap 1, opp_overlap 705348 GCCTCATTAATTGAA CGCCAGC-GCA TTCGCC TGCTGCTGGCG TTATTATTCGGTGCC TERM 886 705374 - 705348 - g 70 -10.2 -3.20723 | gap 1, opp_overlap 705348 GCCTCATTAATTGAA CGCCAGC-GCA TTCGCC TGCTGCTGGCG TTATTATTCGGTGCC TERM 887 705987 - 705960 - g 72 -10.6 -3.12351 | opp_overlap 705956 705956 CTGCGTTACATCCAA TGGTTTACCCCG CAAC CGGAGAAAACCA TTCAGGTTTCGATGG lnt 705324 - 706862 + | apolipoprotein N-acyltransferase TERM 888 707709 - 707681 - g 81 -7.3 -4.72272 | overlap 707700 CCTGTTGACCAAAAA GGGCGGCGATATC AAA GATTTTGCCGACC TGAAAGGCAAAGCCG TERM 889 707924 - 707913 - g 70 -5.8 -4.29326 | GCGAAAGCGAAGAAA CCAG ACAA CTGG GATATCGTCGGCAAG ybeJ 707259 - 708167 + | glutamate and aspartate transporter subunit TERM 890 708290 - 708317 + F 100 -16.4 -5.26316 | TGGGTAACAATCTTC GAGGGTAGCAGT TAAC GCTGCTACCCTC TTTTTTCTGGAGTAG TERM 891 708646 - 708663 + G 71 -2 -5.01811 | TGGTTTAAGGCCGAG CTGGAT CCCAAT ATTCAG TTTTTCCTTTCATCC gltJ 708337 - 709077 + | glutamate/aspartate transport system permease gltK 709077 - 709751 + | glutamate/aspartate transport system permease gltL 709751 - 710476 + | ATP-binding protein of glutamate/aspartate transport system rihA 710594 - 711529 + | ribonucleoside hydrolase 1 TERM 892 711539 - 711580 + F 75 -6.7 -4.40232 | gap 1, overlap 711541 GCTTAACACTCGTCA TTGATTAAGATCACCACGCG TTA CCTG-GGTGGTCTTAATCTA TTTATCTCTTTTTCT TERM 893 711541 - 711578 + F 76 -9.3 -3.77089 | gap 1, overlap 711539 TTAACACTCGTCATT GATTAAGATCACCACGCG TTA CCTG-GGTGGTCTTAATC TATTTATCTCTTTTT ybeW 711613 - 713283 + | putative dnaK protein TERM 894 713329 - 713284 - T 79 -11 -3.3514 | overlap 713285 713287 713309 ATTGAGACCTCATAA TCACGGCTGCCGGATGCGGC GTAAAT GCTGCATCCGGCATCGGCGC AAAAAACACATCGTC TERM 895 713328 - 713285 - T 86 -14.5 -2.60763 | overlap 713284 713287 713309 TTGAGACCTCATAAT CACGGCTGCCGGATGCGGC GTAAAT GCTGCATCCGGCATCGGCG CAAAAAACACATCGT TERM 896 713326 - 713287 - T 82 -13.5 -2.84298 | overlap 713285 713284 713309 GAGACCTCATAATCA CGGCTGCCGGATGCGGC GTAAAT GCTGCATCCGGCATCGG CGCAAAAAACACATC ybeV 714794 - 713343 - | hypothetical protein ybeU 715498 - 714791 - | putative tRNA ligase TERM 897 714941 - 714959 + g 77 -10.2 -3.66784 | TTTGTACAGGGTTAG CGCCTCGC GTA GCGAAGCG TTGTCTTCGCACTGA TERM 898 716139 - 716118 - g 74 -2.9 -4.9934 | overlap 716120 ACAACATTACAAAAA TGCGGAAAG ATTA CTTGCCGGA CTTCCCGCACATTAA ybeT 715600 - 716154 + | hypothetical protein ybeS 717591 - 716164 - | putative enzyme of polynucleotide modification ybeR 718295 - 717588 - | hypothetical protein TERM 899 718538 - 718554 + G 73 -3.7 -4.81212 | AAGGCGATTGCGAGG CTCAATA TAT TGTTGGG TTTTATTATAATCGC TERM 900 718838 - 718813 - g 85 -9.7 -4.1523 | opp_overlap 718834, overlap 718834 CCCAACTATAAAGAA GCGGTTACCTG GTAT CAGATAGCCGC GGAGAGCGGAATGTC TERM 901 719353 - 719335 - g 76 -11 -3.30039 | opp_overlap 719350, overlap 719333 TACGGAGAAGGAAGA CCTGTCGA TCT CCGACAGG CTCTCGACCTGTATC ybeQ 718459 - 719436 + | hypothetical protein ybeL 719988 - 719506 - | hypothetical protein TERM 902 720568 - 720552 - g 78 -5.1 -4.8048 | opp_overlap 720555 CGCGTATATGAAAAA CCAGC TCAAAAT GCTGG GCTTTGGTTATGACT leuS 720130 - 722805 + | leucyl-tRNA synthetase TERM 903 722885 - 722904 + G 72 -10 -3.36785 | overlap 722886 CGGGTGTGGCTGGCA TCTGCGTG ACAC CACGCAGG TTCCTTCCACTATGA TERM 904 722886 - 722903 + G 73 -11.3 -2.6175 | overlap 722885 GGGTGTGGCTGGCAT CTGCGTG ACAC CACGCAG GTTCCTTCCACTATG TERM 905 723051 - 723019 - g 70 -4.7 -4.55295 | opp_overlap 723024 TGCTTGATAAAGAAA CCACGCGTAAGGACG TTC CATCCCTGCGTTTGG GTAAAGTGAGCATCG rlpB 722820 - 723401 + | LPS-assembly lipoprotein RplB TERM 906 723422 - 723464 + G 100 -12 -4.45544 | gap 1, opp_overlap 723425, overlap 723423 723425 CGGTTGTACCCGGAA CA-ACTCCGCGCGCAGCTC AATGAA GGGCTGCGCGCGGCGTATC TTTTACTTGGTAACG TERM 907 723423 - 723462 + G 100 -17.1 -3.83437 | opp_overlap 723425, overlap 723422 723425 GGTTGTACCCGGAAC AACTCCGCGCGCAGCTC AATGAA GGGCTGCGCGCGGCGTA TCTTTTACTTGGTAA TERM 908 723460 - 723425 - g 100 -17.5 -3.63515 | opp_overlap 723423 723422 723425 TTGTACCCGGAACAA CTCCGCGCGCAGCTC AATGAA GGGCTGCGCGCGGCG TATCTTTTACTTGGT TERM 909 723425 - 723460 + G 100 -19.7 -3.49321 | opp_overlap 723425, overlap 723423 723422 TTGTACCCGGAACAA CTCCGCGCGCAGCTC AATGAA GGGCTGCGCGCGGCG TATCTTTTACTTGGT holA 723401 - 724432 + | DNA polymerase III subunit delta TERM 910 724732 - 724742 + G 70 -4.6 -4.48713 | overlap 724725 AACAAGGACCGGACG TGCC GCT GGCG TTTATTATTGGTCAG nadD 724434 - 725075 + | nicotinic acid mononucleotide adenylyltransferase phpB 725099 - 725710 + | phosphohistidine protein PhpB ybeB 725970 - 726287 + | hypothetical protein ybeA 726291 - 726758 + | SPOUT methyltransferase superfamily protein TERM 911 726848 - 726860 + G 77 -6.2 -4.66264 | overlap 726842 GCTGTTTGTGCGCCG GGCG CTGGT CGCC TTTTTGGGGATTTTG TERM 912 728125 - 728112 - g 74 -2.3 -5.03747 | opp_overlap 728100, overlap 728100 728114 AAACGCTTTAAAAAA CCGTG GTAT CAGGG TGACACCATTCCGGT mrdA 726789 - 728690 + | penicillin-binding protein 2 TERM 913 728752 - 728718 - g 100 -6.5 -5.80364 | ATCCGAATAAAAAAA CATTCTGGGATAAAG TCCAT CTCGATCCCACAATG CTGCTGATTTTACTG mrdB 728693 - 729805 + | cell wall shape-determining protein rlpA 729816 - 730904 + | rare lipoprotein A TERM 914 731360 - 731375 + G 77 -10.4 -3.64049 | CAACGACGCATGGGC CACCGG TAAC CCGGTG TTTAAAGGTTCTTCG dacA 730971 - 732254 + | D-alanyl-D-alanine carboxypeptidase fraction A TERM 915 732309 - 732336 + F 75 -9.8 -3.56675 | opp_overlap 732313, overlap 732307 732313 CTAAGCATCAGTAAA AAAACTCCCGCC TTCT GGCGGGAGTTGC TATTTAATTACGTTA TERM 916 732313 - 732332 + F 100 -15 -3.50456 | opp_overlap 732313, overlap 732309 732307 GCATCAGTAAAAAAA CTCCCGCC TTCT GGCGGGAG TTGCTATTTAATTAC TERM 917 732332 - 732313 - f 100 -15 -5.55664 | opp_overlap 732313 732309 732307 GCATCAGTAAAAAAA CTCCCGCC TTCT GGCGGGAG TTGCTATTTAATTAC ybeD 732365 - 732628 + | hypothetical protein lipB 732729 - 733370 + | lipoyltransferase ybeF 733629 - 734582 + | putative DNA-binding transcriptional regulator TERM 918 734901 - 734868 - g 74 -6 -4.57073 | gap 1, overlap 734870 TATCCCGGTTAAAAA CGTG-GCAACAGAGC GCGAA GCCCTGCTGCGCAAG CCGGAATGGATGAAA lipA 734806 - 735756 + | lipoyl synthase TERM 919 735793 - 735810 + T 100 -11.3 -5.36441 | opp_overlap 735793 CTGTCTGATAAAAAA CCCGCTT TTTG AAGCGGG TTTTTTGTATCGAAC TERM 920 735810 - 735793 - T 100 -11.3 -5.24129 | opp_overlap 735793 CTGTCTGATAAAAAA CCCGCTT TTTG AAGCGGG TTTTTTGTATCGAAC tatE 736060 - 735857 - | twin arginine translocase protein E ybeM 736977 - 736189 - | putative amidase TERM 921 736336 - 736354 + g 77 -3 -5.06414 | opp_overlap 736328 736338, overlap 736338 GCCAAAGGGATCTAT AATCCGGC TTT GCCCGATA TTTTTGTTCCCGCAC crcB 737070 - 737453 + | camphor resistance protein CrcB TERM 922 737467 - 737483 + T 83 -9.4 -4.36729 | opp_overlap 737467 AAAGACCAAAAAAAA CCCGCT GATTA AGCGGG TTTTGAATTCTTGCT TERM 923 737483 - 737467 - T 100 -9.4 -5.9663 | opp_overlap 737467 AAAGACCAAAAAAAA CCCGCT GATTA AGCGGG TTTTGAATTCTTGCT cspE 737800 - 737507 - | cold shock protein CspE TERM 924 737758 - 737742 - G 70 -7.3 -4.02302 | opp_overlap 737741 737744 TTTACATGAAAAATA GACACAA ATG CTGTGTC GGTTATCAGTACACC crcA 738475 - 737891 - | palmitoyl transferase for Lipid A TERM 925 738226 - 738249 + g 100 -4.5 -5.73978 | overlap 738218 738227 CAAAACCGCCACCCC ACGGTCGCT CGTTAT AGCGATCGG TTTTTTCTTTGTCGT TERM 926 738227 - 738248 + g 74 -8 -4.01946 | overlap 738218 738226 AAAACCGCCACCCCA CGGTCGCT CGTTAT AGCGATCG GTTTTTTCTTTGTCG dcuC 739040 - 740425 + | C4-dicarboxylate transporter DcuC TERM 927 740463 - 740427 - T 74 -8.7 -3.94746 | opp_overlap 740432 740434, overlap 740429 740430 740433 740434 TCACAGGCAAGTAAA TAGTAATGCCGGAGGCA AGT TTCCTCCGGCTTTATCA TGTCACCCACTGTGG TERM 928 740461 - 740429 - T 72 -9.1 -3.56006 | opp_overlap 740432 740434, overlap 740427 740430 740433 740434 ACAGGCAAGTAAATA GTAATGCCGGAGGCA AGT TTCCTCCGGCTTTAT CATGTCACCCACTGT TERM 929 740460 - 740430 - T 78 -12.6 -2.72881 | opp_overlap 740432 740434, overlap 740429 740427 740433 740434 CAGGCAAGTAAATAG TAATGCCGGAGGCA AGT TTCCTCCGGCTTTA TCATGTCACCCACTG TERM 930 740457 - 740433 - T 75 -9.9 -3.50456 | opp_overlap 740432 740434, overlap 740430 740429 740427 740434 GCAAGTAAATAGTAA TGCCGGAGGCA AGT TTCCTCCGGCT TTATCATGTCACCCA TERM 931 740434 - 740456 + T 95 -13.4 -4.0162 | opp_overlap 740433 740430 740429 740427 740434, overlap 740432 CAAGTAAATAGTAAT GCCGGAGGCA AGT TTCCTCCGGC TTTATCATGTCACCC TERM 932 740456 - 740434 - T 81 -13.4 -2.6955 | opp_overlap 740432 740434, overlap 740433 740430 740429 740427 CAAGTAAATAGTAAT GCCGGAGGCA AGT TTCCTCCGGC TTTATCATGTCACCC TERM 933 740774 - 740811 + T 70 -9.2 -3.4052 | TTTCCAGCATATGTT TACGCTGGCGGAAACG GGTTAG CGTTTGCCCCAGTGTA TTGATTCACTTGAAG SFV_0706 741654 - 741145 - | putative repressor protein TERM 934 743648 - 743624 - g 79 -3.6 -5.08824 | gap 1, overlap 743626 GCCGGAGTGAAAAAA GTTGTGG-TCA GATT TGATCCACAGC AGTTACACAGCACGG SFV_0707 742037 - 743671 + | putative phage transposase SFV_0708 743733 - 744035 + | IS600 ORF1 SFV_0709 744176 - 744889 + | IS600 ORF2 TERM 935 745067 - 745057 - T 71 -6.8 -4.15222 | overlap 745058 ACGGCCTTTAACAAA CTCG CGC CGAG AACCGTCGGGAAGCG SFV_0710 746114 - 745173 - | putative bacteriophage protein SFV_0711 746632 - 746126 - | putative bacteriophage protein SFV_0712 747856 - 746636 - | putative bacteriophage protein SFV_0713 749960 - 748494 - | putative bacteriophage protein SFV_0714 750727 - 749960 - | putative bacteriophage protein TERM 936 750053 - 750073 + g 86 -3.9 -5.37593 | overlap 750055 750056 AACGTTTGGTGACGG TATCTCGCG TTT TGCGAGGTC TTTTTTACTTTCGAC TERM 937 750055 - 750071 + g 72 -6.5 -4.31698 | overlap 750053 750056 CGTTTGGTGACGGTA TCTCGCG TTT TGCGAGG TCTTTTTTACTTTCG SFV_0715 751551 - 750712 - | IS2 ORF2 SFV_0716 751940 - 751575 - | insertion sequence 2 OrfA protein SFV_0717 752717 - 752016 - | putative bacteriophage protein SFV_0718 753414 - 752650 - | putative bacteriophage protein TERM 938 753128 - 753150 + gH 71 -7.7 -3.84266 | overlap 753129 GGGGTAGTCGGGGGA TCGGTACGC ATTCC GCGTATCGG TTTCGTATCCGGTGT TERM 939 753225 - 753253 + gH 78 -6.1 -4.57569 | TGGCAGGCTTTCTGC TGGTACGCA CTTTCCTTTTT TGCGTACCA TTTTTGCAAACCTGC SFV_0719 754528 - 754830 + | IS911 ORF1 TERM 940 755289 - 755278 - g 77 -5.8 -4.63218 | opp_overlap 755283 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SFV_0720 755131 - 755697 + | IS911 ORF2 SFV_0721 755951 - 755703 - | endopeptidase SFV_0722 756202 - 755936 - | IS2 ORF2 SFV_0723 757838 - 756237 - | ISSfl4 ORF3 TERM 941 757585 - 757602 + g 82 -9.1 -4.19238 | overlap 757573 TCTTCCAGAAGATTT CTGGCTG TGTT CAGCCGG TTTTCCAGTTCCGAC SFV_0724 758205 - 757858 - | ISSfl4 ORF2 SFV_0725 758876 - 758202 - | ISSfl4 ORF1 TERM 942 758540 - 758528 - G 73 -9.1 -3.62046 | CGATCCGGGCAACAA CAGCC CCA GGCTG TAACGCCTGCTTAGC TERM 943 758880 - 758907 + r 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG ybcS 759445 - 758930 - | bacteriophage lambda lysozyme TERM 944 759020 - 759058 + g 72 -8.2 -3.83502 | gap 1, opp_overlap 759029 TTTCCATTGCTTACC GCCAGCATATGTCCAGC GACGTA GCTGGTCATATGC-GCC TTTGATATCGCCCTG SFV_0727 759638 - 759940 + | IS600 ORF1 SFV_0728 760081 - 760794 + | IS600 ORF2 TERM 945 760874 - 760860 - T 70 -2.1 -5.07053 | opp_overlap 760860 760862 760866 760868, overlap 760847 760862 760865 AACCACTGCAAAAAA CAGTA GCCGG CACTG CCGGCGGAGGTGCCG TERM 946 760860 - 760908 + T 73 -2.2 -5.13473 | opp_overlap 760847 760860 760862 760865, overlap 760862 760866 760868 AACCACTGCAAAAAA CAGTAGCCGGCACTGCCGGCGG AGGTG CCGTAGGCAATGCCTGTTGATA TTTTTTCCATCTGAT TERM 947 760879 - 760865 - T 80 -12.8 -3.08977 | opp_overlap 760862 760860 760866 760868, overlap 760860 760862 CTGCAAAAAACAGTA GCCGGC ACT GCCGGC GGAGGTGCCGTAGGC TERM 948 760866 - 760902 + T 79 -10 -3.66995 | opp_overlap 760860 760865 760862, overlap 760862 760860 760868 TGCAAAAAACAGTAG CCGGCACTGCCGGCGG AGGTG CCGTAGGCAATGCCTG TTGATATTTTTTCCA TERM 949 760868 - 760900 + T 79 -11.2 -3.39574 | opp_overlap 760860 760865 760862, overlap 760866 760862 760860 CAAAAAACAGTAGCC GGCACTGCCGGCGG AGGTG CCGTAGGCAATGCC TGTTGATATTTTTTC TERM 950 760994 - 760970 - T 100 -11.5 -5.64421 | ATCGGAAAGAAAAAA GGCCATCAG CAAAACT CTGATGGCC TGAATCACCTTTACC TERM 951 761347 - 761332 - T 74 -3.9 -5.00616 | GCGCTGTGCAAAAAA CCGCC AACCAA GGCAG TTAAGAGTGTGTTCC TERM 952 762026 - 762014 - T 100 -6.2 -5.96219 | opp_overlap 762013 CAGGTATAAAAAAAA CCGC ATAAA GCGG GCTCTTTCAAATGTC SFV_0733 762948 - 762658 - | putative bacteriophage protein SFV_0734 763547 - 762948 - | unknown protein encoded within prophage SFV_0735 763873 - 763586 - | hypothetical protein TERM 953 764045 - 764009 - R 100 -8.6 -5.74288 | gap 1, opp_overlap 764009 ATAAACAACAAAAAA CCCGCCGAAACGCTGAG AGAT CACAGCGATG-GGCGGG TTAAGTGCGGGTGCG TERM 954 764249 - 764264 + r 83 -9 -4.36411 | ACAGATGACGATCAG GGCGAT TAAC ATCGCC TTTTGCTGCTTCATA TERM 955 764343 - 764393 + r 100 -12.1 -4.64844 | gap 1, opp_overlap 764310 CAAAGCATGAAATTG GCCTCAGATTAATGTTAAGCGTCT TGCC GGACGCGTAATGTTAA-CTGGGGC TTTTCTCTATCTGCC SFV_0736 765192 - 764506 - | hypothetical protein TERM 956 765254 - 765269 + r 77 -11.8 -2.85402 | overlap 765262 ATGTGTGACTGCTCC CCGCCC TTTC GGGCGG TCTCCTGATGATTTG SFV_0737 765696 - 765340 - | putative bacteriophage protein TERM 957 765630 - 765642 + g 70 -5.5 -4.37886 | AATTAACCTGATTAC GAGGG TCA TCCTC TTTTATCGGAAATAA SFV_0739 767721 - 767083 - | putative bacteriophage protein TERM 958 767335 - 767355 + g 85 -8.3 -4.5852 | overlap 767336 TTTTTGATCCGTTTG TGTAACGCT GGC AGCGTTACC TTTTCGTTTCAGTTC TERM 959 767336 - 767354 + g 80 -11.8 -3.34028 | overlap 767335 TTTTGATCCGTTTGT GTAACGCT GGC AGCGTTAC CTTTTCGTTTCAGTT TERM 960 767734 - 767754 + r 93 -12.7 -3.68351 | CATTTGTTTTCACCT TGTAACGCT CGC AGCGTTACA TTTAACTGATACCGA ydaT 768104 - 767799 - | putative bacteriophage protein SFV_0741 768433 - 768206 - | DNA-binding transcriptional regulator DicC TERM 961 768528 - 768518 - H 78 -5.4 -4.87626 | CCCTAATATGAAAAA CGAA ACC TTCG GTGCTCGCCTCTTAC TERM 962 768967 - 768995 + H 76 -4.7 -4.82901 | overlap 768972 ACAAACTTTCAAACA CTTGTGTTTTTTA CAT TAAAAAACTTAGG TTTTTCTACACAAAA TERM 963 769350 - 769330 - g 78 -7.5 -4.30441 | overlap 769331 CTAGAAGATGCAAAA CGCCTCCAG CAA CTGGAGCCA AATGCAGGCACTGGG TERM 964 769443 - 769423 - g 88 -11.9 -3.71487 | TATGATAGCGAAGAA GCCTTCTAC AAA GCAGAAGGC CGTGCAGGATATTCA SFV_0742 769276 - 769479 + | hypothetical protein SFV_0743 770626 - 769721 - | insertion element IS2 transposase InsD SFV_0744 770949 - 770584 - | insertion sequence 2 OrfA protein TERM 965 771604 - 771617 + G 100 -5.2 -5.64274 | opp_overlap 771604 GACTACTGCGCATAA CCGC GCTCAG GCGG TTTTTTTATGCGTCA SFV_0745 771497 - 772345 + | putative bacteriophage protein TERM 966 772538 - 772518 - T 79 -10.5 -3.58726 | CTGTGTGACAGACAA GTAAGCCCT GAT AAGGCTTAC ACTGCTGAACTTATT SFV_0746 773551 - 772838 - | IS600 ORF2 SFV_0747 773994 - 773692 - | IS600 ORF1 SFV_0748 774060 - 774677 + | hypothetical protein TERM 967 774792 - 774815 + T 93 -10.2 -4.58395 | opp_overlap 774789 774788, overlap 774794 AAACGGATGAATCCG GGGAGGCCCG GGGG CGGGCCTCTG TTTTTCCGGAGTCAG TERM 968 774794 - 774813 + T 100 -15 -3.90762 | opp_overlap 774789 774788, overlap 774792 ACGGATGAATCCGGG GAGGCCCG GGGG CGGGCCTC TGTTTTTCCGGAGTC ipaH_1 776683 - 774857 - | invasion plasmid antigen TERM 969 777041 - 777081 + H 79 -8 -4.48072 | gap 1, opp_overlap 777039 777049 777070, overlap 777045 777070 GATCCAAATCATATC T-CAATGTACTGTTTTTTT CTTT AAAAAAACAGTACATTCTA TTTTATAATGACTGT TERM 970 777045 - 777076 + H 100 -14.8 -4.04187 | opp_overlap 777039 777049 777070, overlap 777041 777070 CAAATCATATCTCAA TGTACTGTTTTTTT CTTT AAAAAAACAGTACA TTCTATTTTATAATG TERM 971 777095 - 777070 - H 79 -2.7 -5.40072 | gap 1, opp_overlap 777045 777041 777070, overlap 777049 777039 TTTTCTTTAAAAAAA CAGTACATTCTA TTT TATAATG-ACTG TGTATTCCCATGGAA TERM 972 778521 - 778507 - g 85 -7 -4.7373 | overlap 778509 CTACTGCATGAAAAA GGCCGC TAT GCGGTC GGGCAGGGACCAATG ybhE 777565 - 778560 + | 6-phosphogluconolactonase TERM 973 778570 - 778600 + F 79 -12 -3.27164 | gap 1, opp_overlap 778562 778573, overlap 778563 778571 778573 CACTAACCGCTGATT TA-ACCGGCGCAG TCTCTC CTGCGCCGGTGTA TTAACTTATCTCCTG TERM 974 778571 - 778598 + F 81 -12.7 -3.19511 | opp_overlap 778562 778573, overlap 778570 778563 778573 ACTAACCGCTGATTT AACCGGCGCAG TCTCTC CTGCGCCGGTG TATTAACTTATCTCC TERM 975 778596 - 778573 - f 93 -15.3 -3.06133 | opp_overlap 778571 778570 778563 778573, overlap 778562 TAACCGCTGATTTAA CCGGCGCAG TCTCTC CTGCGCCGG TGTATTAACTTATCT TERM 976 778573 - 778596 + F 100 -15.3 -3.15379 | opp_overlap 778562 778573, overlap 778571 778570 778563 TAACCGCTGATTTAA CCGGCGCAG TCTCTC CTGCGCCGG TGTATTAACTTATCT TERM 977 780265 - 780249 - g 70 -5.1 -4.4078 | overlap 780251 CCGCTGGAACGAAAA CTGGAAA AGT TTTCCCG ACTGATAATCAGATT ybhH 779738 - 780790 + | hypothetical protein TERM 978 780851 - 780829 - f 71 -10 -3.15732 | overlap 780827 780826 ACAATCAATAAAGGA CTTCTGTATG AGT CATACAGAAA GAACAGGATTTTAAA TERM 979 781394 - 781377 - g 79 -4.1 -5.09426 | opp_overlap 781390 781391 CCGAACCGGAAAAAA GTCCG CGTCGTGT CGGAC ATTACCTGATGATGT ybhI 780866 - 782299 + | putative membrane pump protein TERM 980 782443 - 782466 + F 82 -13.2 -2.89055 | TCCATTTATTATCTT TCTGCGCACT TCAC GGTGCGCAGA TATCTGGAGCATTTG TERM 981 782517 - 782503 - g 81 -7 -4.63184 | AAGTTATCTGAAAAA GGCGTG TTT CTCGCC AGTAATAACGAAATA TERM 982 782595 - 782584 - g 100 -5.8 -5.71638 | opp_overlap 782584 GAAGAAGCAAAAAAA GGCA CTAT TGCC TGGTCTATTCTCTCT ybhJ 782482 - 784662 + | putative enzyme TERM 983 784721 - 784769 + T 75 -9.5 -3.53811 | opp_overlap 784766, overlap 784708 784711 784751 784754 GATGCGATGCTGGCG CATCTTATCCGACCTACAAATCG CAT CGAACCGTAGGCCGGATAAGGCG TTTACGCCGCATCCG ybhC 786086 - 784803 - | putative pectinesterase TERM 984 786231 - 786205 - R 83 -13.8 -2.53759 | opp_overlap 786202, overlap 786210 786212 AATACCTTTAAGTGA TACCAGATGGCA TTG CGCCATCTGGCA GAGTGATTAACTAAA ybhB 786714 - 786238 - | putative kinase inhibitor protein bioA 788173 - 786773 - | adenosylmethionine--8-amino-7-oxononanoate transaminase bioB 788149 - 789189 + | biotin synthesis sulfur insertion protein TERM 985 789229 - 789209 - g 76 -9.6 -3.77302 | overlap 789205 GCAGGAGAAAATCAA CGCGGCGC TCGAT GCGCGGCG TGCTGCCGATGCCCT bioF 789186 - 790340 + | 8-amino-7-oxononanoate synthase bioC 790327 - 791082 + | biotin biosynthesis protein BioC bioD 791075 - 791752 + | dithiobiotin synthetase TERM 986 792548 - 792533 - g 72 -4.6 -4.63218 | opp_overlap 792534, overlap 792534 TTGCGCCCAACAAAA CGCTGG CGGC CCAGCT GTATGGCGAAATGAA TERM 987 793139 - 793129 - g 70 -6.8 -4.1421 | GAGATCAAAGAAGAA CTGG CCG CCAG ACGCAAAGTGCTGTT TERM 988 793182 - 793168 - g 75 -5.7 -4.67697 | overlap 793161 793170 TTGGAAAACAACAAA CTGCT GGAAG AGCAG CGGCTGACCCAGCGT uvrB 792331 - 794352 + | excinuclease ABC subunit B TERM 989 794443 - 794501 + T 87 -9.5 -4.21607 | gap 1, opp_overlap 794466 794467, overlap 794443 GCAATATATTGAATT -TGCGCGGTTTGTAGGCCGGATAAGGCG TTCA CGCCGCATCCGGCATAAACAACGCGCAC TTTGTCTTCAATAGG TERM 990 794443 - 794500 + T 100 -15.5 -3.12482 | opp_overlap 794466 794467, overlap 794443 GCAATATATTGAATT TGCGCGGTTTGTAGGCCGGATAAGGCG TTCA CGCCGCATCCGGCATAAACAACGCGCA CTTTGTCTTCAATAG ybhK 795452 - 794544 - | putative structural protein moaA 795817 - 796839 + | molybdenum cofactor biosynthesis protein A moaB 796861 - 797373 + | molybdopterin biosynthesis protein B moaC 797376 - 797861 + | molybdenum cofactor biosynthesis protein C moaD 797854 - 798099 + | molybdopterin synthase small subunit TERM 991 798373 - 798383 + G 80 -5.4 -4.89852 | GGAATTATGGCCGGG CGAT GAA ATCG TTTTTGTCGGTGTCA MoaE 798101 - 798553 + | molybdopterin synthase large subunit TERM 992 798530 - 798553 + F 76 -2.3 -5.4505 | overlap 798537 GCCCGGGAGAGCGAT CTGCAGGCG GCAAAA CGCTGGTAG TTTTTTGTTAGCCGG ybhL 798690 - 799394 + | hypothetical protein TERM 993 799414 - 799432 + F 100 -8.1 -5.84381 | TTTTCACCATCACTA TCCCGGC CATGT GTCGGGA TTTTTTTCTTACTAA TERM 994 799514 - 799544 + F 70 -4.8 -4.42851 | opp_overlap 799521, overlap 799509 AATCGTTTTCCGTAT CCATAAATACAAAA GTA TTTTGTATGCGTGG TTTTAAATTTATTGA TERM 995 799919 - 799946 + G 85 -7 -4.76041 | gap 1 TGTATATGCCATTAT CATCGTGTTCAGC ACT GC-GGGCGCGATG TTTTTAATCAGTATG ybhM 799599 - 800312 + | hypothetical protein ybhN 801304 - 800348 - | hypothetical protein TERM 996 801053 - 801067 + g 90 -11.4 -3.86015 | opp_overlap 801043 801041 CGACACCAGCATCAC CTGGCG CTT CGCCAG TTTGTGACCGCAGTA ybhO 802545 - 801304 - | cardiolipin synthase 2 ybhP 803303 - 802542 - | hypothetical protein TERM 997 802595 - 802632 + g 77 -6.2 -4.62783 | gap 1, overlap 802598 802598 AAAGGTGTCGCCATG TCCGCAGCGGCAACGCG GTTGG CGCGCTGGCGCTG-GCA TTTTTGACGTAGATC ybhQ 803436 - 803846 + | hypothetical protein TERM 998 804741 - 804775 + T 71 -10 -3.21912 | GTTCCACCGAATGCT CGCCGTTATCTTCATC GTA GATGGCGATGGTGGCG TTAGTCACTTCCAGC ybhS 806059 - 804926 - | hypothetical protein ybhF 807788 - 806052 - | putative ATP-binding component of a transport system TERM 999 806908 - 806892 - G 70 -5.1 -4.41302 | CAGCAAATCAATAAA CGCATCT TCA AAACGCG GCGTAGTTTCGTTGA TERM 1000 807546 - 807567 + g 93 -8.7 -4.7373 | gap 1, opp_overlap 807540, overlap 807546 807548 CGGCATATAGCCGAG C-ACGGCGTG CAG CGCGCCGTCG TTTTTGATCGGATCA TERM 1001 807548 - 807564 + g 80 -11.5 -3.28472 | opp_overlap 807540, overlap 807546 807546 GCATATAGCCGAGCA CGGCGTG CAG CGCGCCG TCGTTTTTGATCGGA SFV_0778 808776 - 807781 - | hypothetical protein ybiH 809450 - 808779 - | putative DNA-binding transcriptional regulator TERM 1002 809393 - 809405 + g 81 -4.8 -5.09173 | opp_overlap 809379 809380 ACTGCGCCAGTGCGG CAGC AATCA GCTG TTTTTTCGCCTGTTC TERM 1003 809463 - 809486 + H 73 -9.8 -3.37354 | CATCGCACAGTCCAT TCTTAATCAA ATGA TTGATTAAGA TTATGACTCCATATG rhlE 809679 - 810899 + | ATP-dependent RNA helicase RhlE TERM 1004 810961 - 810992 + TF 75 -10 -3.53012 | opp_overlap 810971, overlap 810962 TTGCATGCTTTTGTA GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA TTTCACAACAAGCAC TERM 1005 810962 - 810991 + TF 81 -13.5 -2.71712 | opp_overlap 810971, overlap 810961 TGCATGCTTTTGTAG GCCGGATAAGGCG TTTA CGCCGCATCCGGC ATTTCACAACAAGCA ybiA 811555 - 811073 - | hypothetical protein TERM 1006 811930 - 811907 - gH 100 -8.8 -5.27779 | GCGAAGAGCAAAAAA CGCTGGTGGT GAGT ACCGCCAACG TGGCGTTGCAGGATC dinG 811540 - 813825 + | ATP-dependent DNA helicase DinG TERM 1007 813808 - 813821 + FH 71 -9.5 -3.25223 | opp_overlap 813804 AAAACGAAATCCCCA CGCCG TCGG CGGCG TTAATGATGTGAGTC TERM 1008 813881 - 813908 + G 71 -9.1 -3.53444 | gap 1, opp_overlap 813881 813879 813877 813900 AAATCATTAAAGAGA TCGGGCGCG-GG AAAAA CCACGCGCGCGA TTTAGACCGGGATAC ybiB 813853 - 814815 + | hypothetical protein TERM 1009 814827 - 814850 + F 95 -12.5 -4.07568 | TTAATTTTTATCTCA GCCGGATGA GCCACG TCATCCGGC TTTTACCCCACCGCA ybiC 814956 - 816041 + | hypothetical protein TERM 1010 816069 - 816048 - T 100 -13.7 -5.81412 | GCCAGCTAAAAAAAA GCCCGTCCA GTGG CGGACGGGC AAACAAGGGTAACAT TERM 1011 816193 - 816226 + T 70 -9.5 -3.07344 | opp_overlap 816203 816205 816206, overlap 816205 816206 GGTTCGGATTTTGTA GGCCTGATAAGACGC GGTA GCGTCGCATCAGGCA TCTGTTGCCGGATGC ybiJ 816530 - 816270 - | hypothetical protein TERM 1012 816403 - 816421 + g 71 -3.1 -4.79657 | overlap 816389 AGGGTGGATGCGCCA TCGGC AGAAACCAC GCCGA TTTTATTCATGTTCT TERM 1013 816580 - 816595 + r 83 -4 -5.40072 | overlap 816581 ACGTTGTTTCGTCGA TGTGAT GAGT ATCACG TTTTTTTACGAGAGA ybiI 817061 - 816795 - | hypothetical protein ybiX 817812 - 817135 - | putative hydroxylase TERM 1014 817215 - 817231 + g 73 -3.7 -4.87786 | overlap 817217 TTTCACCATAGCGGC TTTTCAG CGA CTGAATA TTTTTGTCCAGTTCA TERM 1015 817846 - 817829 - H 100 -12.7 -4.58283 | CAAGTTCTCCAAAAA GTGGGGC CTGC GCCCCAC ATCTGAATCAGAAAT TERM 1016 819795 - 819785 - H 71 -6.8 -4.07124 | CACCACGCATATAAA TGGC GTC GCCA GTGGTGGAGTTACCG TERM 1017 819895 - 819920 + H 100 -9.8 -5.61596 | opp_overlap 819895 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 1018 819920 - 819895 - H 72 -9.1 -3.61398 | opp_overlap 819895 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SFV_0788 819910 - 821256 + | IS4 orf TERM 1019 821267 - 821238 - T 89 -9.3 -4.59109 | overlap 821240 821261 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACCCACGCCGGGGA TERM 1020 821265 - 821240 - T 100 -16.3 -3.90762 | overlap 821238 821261 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACCCACGCCGGG TERM 1021 821824 - 821803 - T 74 -7.3 -4.23434 | opp_overlap 821803 CAAAACAGGCGAAAA CTGCATCCA GAGG CGAATGCAG TTACGTTGGTGGGGT ybiM 822243 - 821839 - | hypothetical protein TERM 1022 821907 - 821925 + g 71 -3 -4.86033 | overlap 821908 TAATGACATAACCTT TCGCGC CTTGTTC GCGCGC TTTTTCTGCCAGTTT TERM 1023 822081 - 822091 + g 71 -3.2 -4.77036 | CGGTGGCAATCAGTA GTGT GAG GCAC TTTTTCATAATGACA ybiN 822294 - 823301 + | putative SAM-dependent methyltransferase ybiO 825241 - 823298 - | putative transport protein TERM 1024 824873 - 824898 + g 74 -11.1 -3.18264 | overlap 824880 TTGGAAAGCGATGGT GCGACTGCCTG CATT CAGGTTGTCGC TTAATACCTGGCCGA TERM 1025 825372 - 825385 + r 100 -4.5 -5.8187 | gap 1, overlap 825364 AGCACATCCGCCAGT GC-GCC ATA GGCCGC TTTTTTTGTTCGATA glnQ 826505 - 825783 - | glutamine ABC transporter ATP-binding protein glnP 827161 - 826502 - | glutamine ABC transporter permease protein TERM 1026 827306 - 827323 + r 83 -4.1 -5.33866 | overlap 827307 GTAGCGTTATTATTT CGGTTCA GTAC TGAACCA TTTTTTGTAGATTTC glnH 828046 - 827300 - | glutamine ABC transporter periplasmic protein TERM 1027 828165 - 828155 - R 80 -6.8 -4.59109 | opp_overlap 828155 828154 GAGATGCGGCAAAAA CGTG ATG CACG ATTTATAGGGCAATA TERM 1028 828232 - 828190 - R 80 -12.8 -3.06315 | opp_overlap 828197 828231, overlap 828227 GCAATACCCTGAAGA TGCACCATTCTGGGGCACCA ATC TGGTGCGCTAAAATTGTGCA CTCAACACAGTGATT TERM 1029 828293 - 828274 - R 77 -3.6 -5.16237 | opp_overlap 828274 AACCTGATGAAAAAA CAATCTTT ATGT AACGATTG TGTGATGATGTGGAT TERM 1030 828387 - 828409 + r 79 -7.6 -4.40804 | opp_overlap 828388, overlap 828388 GGGCTGCAAAACAAA ACGGCCTCCT GTC AGGAAGCCGC TTTTATCGGGTACTA TERM 1031 828388 - 828408 + r 77 -11.1 -3.24 | opp_overlap 828388, overlap 828387 GGCTGCAAAACAAAA CGGCCTCCT GTC AGGAAGCCG CTTTTATCGGGTACT TERM 1032 828408 - 828388 - R 100 -13.3 -5.07652 | opp_overlap 828388 828387 GGCTGCAAAACAAAA CGGCCTCCT GTC AGGAAGCCG CTTTTATCGGGTACT dps 829076 - 828450 - | DNA starvation/stationary phase protection protein Dps TERM 1033 828857 - 828872 + g 87 -4.7 -5.29782 | TAACCTGGCGATTCA GCAAC TCTACT GTTGC TTTTTTCTCGCTGTC TERM 1034 829243 - 829214 - R 95 -13.1 -3.96827 | opp_overlap 829211, overlap 829237 AAAAGTAGCGAGAAA TTCTGCATGGTTA TGCA TAACCATACAGAA ATGTAAATTTAATTA ybiF 830139 - 829252 - | threonine and homoserine efflux system TERM 1035 830331 - 830315 - H 79 -9.5 -3.72315 | opp_overlap 830314 830315, overlap 830313 ATGACAGGGAAAACA TGCGTAA TAC TTACGCA GTTCTCTGAAAAAGT ompX 830492 - 831007 + | outer membrane protein X TERM 1036 831022 - 831051 + T 100 -12.3 -4.70879 | opp_overlap 831028, overlap 831028 ATCACTTTGGTGATA TAAAAATCCGCCT CTCG GGGCGGATTTTTG TTTTTAAGGTTTCGG TERM 1037 831045 - 831028 - T 91 -8.4 -4.96848 | opp_overlap 831022 831028 TTGGTGATATAAAAA TCCGCC TCTCGG GGCGGA TTTTTGTTTTTAAGG TERM 1038 831028 - 831045 + T 100 -9.1 -5.61881 | opp_overlap 831028, overlap 831022 TTGGTGATATAAAAA TCCGCCT CTCG GGGCGGA TTTTTGTTTTTAAGG ybiP 832638 - 831055 - | putative enzyme TERM 1039 831454 - 831479 + g 70 -4.7 -4.50159 | TAAATCGTCCGTTTG CGTCATGGTAT AGAG ATAGCACGACG TTTCTTTCGATTGCA TERM 1040 832609 - 832594 - G 71 -9 -3.55563 | AGTCCACGGGCTAAA TACCCG GCTA CGGGTA ACAAGCGATTCTTTG TERM 1041 832889 - 832912 + H 76 -8.1 -4.05322 | opp_overlap 832891, overlap 832891 ATAAAAGCAGGAGTG AAGCGGCGT ACCGCG ACGCCGCTA TTTATCTGAAGGTTT TERM 1042 832910 - 832891 - H 74 -10.7 -3.12803 | opp_overlap 832889 832891 AAAAGCAGGAGTGAA GCGGCGT ACCGCG ACGCCGC TATTTATCTGAAGGT TERM 1043 832891 - 832910 + H 79 -10.7 -3.615 | opp_overlap 832891, overlap 832889 AAAAGCAGGAGTGAA GCGGCGT ACCGCG ACGCCGC TATTTATCTGAAGGT SFV_0800 833224 - 833691 + | manganese transport regulator MntR TERM 1044 833949 - 833961 + G 70 -6.9 -4.04319 | overlap 833943 ATGTTTATGGTGCTG GCGGC GGC GCTGC TTTCTACCTTTCTGA ybiR 833688 - 834806 + | hypothetical protein TERM 1045 834825 - 834843 + T 100 -11 -4.75954 | opp_overlap 834825 CTGGCAAATAAAAAA GGCGGATT ATG AGTCCGCC TTTGTTTTACGTTTT TERM 1046 834843 - 834825 - T 100 -8.8 -5.63517 | opp_overlap 834825 CTGGCAAATAAAAAA GGCGGATT ATG AGTCCGCC TTTGTTTTACGTTTT ybiS 835784 - 834864 - | hypothetical protein ybiT 836003 - 837595 + | putative ATP-binding component of a transport system TERM 1047 837680 - 837656 - T 72 -8.5 -3.79633 | overlap 837654 GACAAATGCAAAATA GCCTGATGCGC TAC GCTTATCAGGC CTACGCAGTACCTGT ybiU 839101 - 837836 - | hypothetical protein TERM 1048 837939 - 837949 + g 88 -8.2 -4.62069 | CGCGGGAAGTCGCCC GGCG ATG CGCC TTTTTCCAGTGCGGC TERM 1049 838481 - 838444 - G 74 -7.6 -4.08394 | overlap 838432 838445 AGACGTTGGCGAAAA CGTGCTGATACGCTGG AAGCAG CCAGCGTTCCAGCGCC CCGGAGTCGGTATGC TERM 1050 838480 - 838445 - G 72 -11.1 -3.04715 | overlap 838444 GACGTTGGCGAAAAC GTGCTGATACGCTGG AAGCAG CCAGCGTTCCAGCGC CCCGGAGTCGGTATG TERM 1051 839244 - 839226 - R 100 -11.7 -4.43173 | AAAAAGAAGGGAAAA CCGGAGC GCATG GCTCCGG TAGAGAGGTCAGCTG SFV_0805 840068 - 839253 - | hypothetical protein ybiW 842646 - 840214 - | putative formate acetyltransferase TERM 1052 840501 - 840513 + g 71 -9.1 -3.55444 | opp_overlap 840499 CGCCGCCGAGAATCG CTGCC GTA GGCAG TTTACCCACTGAGCC TERM 1053 842197 - 842211 + g 71 -2.8 -4.77438 | opp_overlap 842193 CGCTTTAATGATGCC GGTC GCCAGCA GACC TTTTTGCTCATCGGT ybiY 843551 - 842652 - | putative pyruvate formate-lyase 2 activating enzyme TERM 1054 842917 - 842930 + g 79 -3.7 -5.11033 | overlap 842914 ATAATGATTTTTTTG CCCGC TGCG GCGAG TTTTTTCAGGTTATC TERM 1055 843113 - 843096 - G 76 -12.7 -2.52834 | overlap 843095 TACCGCAGTATGAAT GCCTGCC TCGT GGCAGGC TTGCAGCAGCGCCGT mipB 843682 - 844344 + | fructose-6-phosphate aldolase TERM 1056 844450 - 844490 + T 77 -10.3 -3.37474 | opp_overlap 844443 844444 844476 844477, overlap 844451 844481 CCAGATAAGGCGTTC ACGCCGCATCTGGCGTCTG GAG CAAATGCCTGATGCGACGC TTGTCGCGTCTTATC TERM 1057 844451 - 844489 + T 83 -13.8 -2.62003 | opp_overlap 844443 844444 844476 844477, overlap 844450 844481 CAGATAAGGCGTTCA CGCCGCATCTGGCGTCTG GAG CAAATGCCTGATGCGACG CTTGTCGCGTCTTAT TERM 1058 844510 - 844476 - T 72 -8.5 -3.72576 | opp_overlap 844451 844450 844481, overlap 844444 844477 GGCGTCTGGAGCAAA TGCCTGATGCGACGC TTGTC GCGTCTTATCAGGCT TGGAGGTGGCAATTA TERM 1059 844509 - 844477 - T 77 -12 -2.83403 | opp_overlap 844451 844450 844481, overlap 844444 844476 GCGTCTGGAGCAAAT GCCTGATGCGACGC TTGTC GCGTCTTATCAGGC TTGGAGGTGGCAATT TERM 1060 844481 - 844500 + T 73 -10 -3.33261 | opp_overlap 844444 844477 844476, overlap 844451 844450 CTGGAGCAAATGCCT GATGCGAC GCTT GTCGCGTC TTATCAGGCTTGGAG moeB 845248 - 844523 - | molybdopterin biosynthesis protein MoeB TERM 1061 844611 - 844642 + g 79 -10.1 -3.79668 | opp_overlap 844603 TACATGACGATTTTC CCGCTGGCCGGTT TGCCAT AACCTGCCAGCAG TTTGATCGCTTCCAT moeA 846507 - 845272 - | molybdopterin biosynthesis protein MoeA TERM 1062 845522 - 845549 + g 73 -9 -3.66908 | overlap 845512 845534 CGTACGCGCTGGCGC GCGGGCACGCCG CTGG CGGTGTTGCCGC TTAGTTTTGCCAGCA TERM 1063 845616 - 845604 - G 78 -10.5 -3.53444 | TCAGCGTCGCTGAAA CCGGG TTG CCCGG CAGGCCGCAGAACCA TERM 1064 845810 - 845800 - G 72 -6.8 -4.15044 | GTCGGCTTCAATAAA TGCG GCG CGCA GGGCATGTGGATCGT TERM 1065 845974 - 845964 - G 87 -4.6 -5.252 | CACCGGTAGAAAAAA GCGC TAC ACGC ACTTTACGAATCACC TERM 1066 846416 - 846404 - G 78 -7.7 -4.36063 | AGAATACGACCAAAA CACTG AAC CAGTG GCAGCGTTTCCTGGG TERM 1067 847376 - 847390 + G 70 -5.6 -4.30719 | opp_overlap 847377, overlap 847377 GATGCTACGCCAATA ACGCCA GTG TGGCGC TTTCTTGTACCGGCA TERM 1068 847389 - 847377 - g 73 -9.1 -3.65224 | opp_overlap 847377 847376 ATGCTACGCCAATAA CGCCA GTG TGGCG CTTTCTTGTACCGGC ybiK 846769 - 847677 + | L-asparaginase TERM 1069 848192 - 848168 - g 77 -11.4 -3.15544 | opp_overlap 848164 848182 CGTTATTCGCATCAA CTCTCTGGCG GGATG CGCCAGCGAG TGATGATTGCGATGG SFV_0812 847697 - 849535 + | glutathione transporter ATP-binding protein TERM 1070 851029 - 851013 - g 71 -3 -4.82901 | gap 1, overlap 851015 CTGGTGGTAGAAAAA CTG-GTG TCGG CACACAG TAAAAACCTGACCGG SFV_0813 849555 - 851099 + | putative transport protein TERM 1071 851538 - 851563 + G 71 -3.2 -4.87291 | overlap 851526 CGGTGTCGGGGATCT CGTTTCCGGC ATTTGC GCTGGGGATG TTTTTAATTCAGGTA TERM 1072 851942 - 851954 + G 70 -5.5 -4.42653 | TACCCGGTGATTCAG GCGGA AAT TCTGC TTTTCTCGCTGGAAT SFV_0814 851117 - 852037 + | putative transport system permease protein TERM 1073 852568 - 852604 + F 70 -9.5 -3.01712 | gap 2 GCCATTTTTTCCATC CCCGCGT-TTGCC-CGC CTGGT GCGCGGCAACACGCTGG TGTTGAAACAGCAAA TERM 1074 853093 - 853064 - g 74 -6.4 -4.58283 | TAATTTGGTTAAAAA GCCGCAGCAA GGGACTATTT TTGCAGCGGC ACAGCGTTCAGATAG TERM 1075 854647 - 854622 - g 74 -3.2 -4.88067 | overlap 854624 854628 AGTTACGCAGAAAAA CTGAAACTGG CGATTT CCAGTATCCG TGACCATATGTTCTC TERM 1076 855078 - 855065 - g 71 -2.3 -4.95484 | CATCATGAAAGAAAA TGGCC TGAA GGCGA ACAGCCTCTGTGTTG SFV_0816 853053 - 855479 + | hypothetical protein TERM 1077 855518 - 855529 + G 79 -4.4 -4.95806 | overlap 855527 AGTTCGTACTTACAG TCAG TCTG CTGA TTTTTATCATGATTT TERM 1078 856052 - 856042 - g 72 -8.2 -3.72051 | overlap 856035 TTTAAGAACGGTAAA CCGG TGA CCGG TGATGAATATAATGC SFV_0817 855487 - 856815 + | hypothetical protein TERM 1079 856864 - 856816 - T 71 -9.8 -3.1505 | gap 1, opp_overlap 856800 856824 856828, overlap 856819 ATTAGCTGGCAGTAA TCATTATTCGCAGGCCGGACAAA TGAT TTTGCCCGGCCTG-AATTAATTA AACCCGGCTACCCCA TERM 1080 856861 - 856819 - T 74 -11.5 -2.78018 | gap 1, opp_overlap 856824 856828, overlap 856816 AGCTGGCAGTAATCA TTATTCGCAGGCCGGACAAA TGAT TTTGCCCGGCCTG-AATTAA TTAAACCCGGCTACC TERM 1081 856824 - 856857 + T 73 -9.5 -3.33696 | opp_overlap 856819 856816, overlap 856828 GCAGTAATCATTATT CGCAGGCCGGACAAA TGAT TTTGCCCGGCCTGAA TTAATTAAACCCGGC TERM 1082 856828 - 856853 + T 81 -13.3 -2.60244 | opp_overlap 856819 856816, overlap 856824 TAATCATTATTCGCA GGCCGGACAAA TGAT TTTGCCCGGCC TGAATTAATTAAACC yliG 858187 - 856862 - | hypothetical protein TERM 1083 858167 - 858155 - G 90 -9.1 -4.50159 | GCCAAGGGAAACAAA GCCGA TTT TCGGC TGGGGAGTTACTTTG bssR 858400 - 858783 + | biofilm formation regulatory protein BssR TERM 1084 858779 - 858823 + T 76 -5 -4.84359 | opp_overlap 858787 858791, overlap 858787 858788 858791 CCATGCTTGAGAAGG CCTGAAAACTAAGGGGGAGA AAGCG TCTCCCCCTTCATGTTTAAG TTTTTGTAAAAATGA TERM 1085 858815 - 858787 - T 83 -9.6 -4.12198 | opp_overlap 858787 858779 858788 858791, overlap 858791 GAGAAGGCCTGAAAA CTAAGGGGGAGA AAGCG TCTCCCCCTTCA TGTTTAAGTTTTTGT TERM 1086 858788 - 858815 + T 72 -9.3 -3.59063 | gap 1, opp_overlap 858787 858791, overlap 858787 858779 858791 AGAAGGCCTGAAAAC T-AAGGGGGAGA AAGCG TCTCCCCCTTCA TGTTTAAGTTTTTGT TERM 1087 858791 - 858811 + T 88 -12.6 -3.48703 | opp_overlap 858787 858791, overlap 858788 858787 858779 AGGCCTGAAAACTAA GGGGGAGA AAGCG TCTCCCCC TTCATGTTTAAGTTT TERM 1088 858811 - 858791 - T 93 -12.6 -3.67175 | opp_overlap 858791 858788 858787 858779, overlap 858787 AGGCCTGAAAACTAA GGGGGAGA AAGCG TCTCCCCC TTCATGTTTAAGTTT TERM 1089 859359 - 859371 + T 75 -2.7 -5.16841 | CGGCTGGTATTCGAC GGTAA AGG TTATC TTTTTATTGCTCTGG TERM 1090 859413 - 859400 - T 70 -9.5 -3.10579 | overlap 859397 GGGTGAAAACAATCA GCGCC CGAC GGCGC AGGATCTGGATAAAT yliJ 860583 - 860005 - | putative transferase TERM 1091 860909 - 860924 + H 84 -4.7 -5.30199 | TCTCCTTCGTGGTCT TGCAG CGGGTT CTGCA TTTTTATTCCTTTTT SFV_0823 861899 - 862201 + | IS600 ORF1 SFV_0824 862342 - 863055 + | IS600 ORF2 TERM 1092 863381 - 863357 - T 82 -12.1 -3.30159 | opp_overlap 863357 TTAATCTTCTGATAA CCGGATGGCGC GAA ACGTCATCCGG TTATACGTCATTAAT TERM 1093 863357 - 863381 + T 90 -13.6 -3.39862 | opp_overlap 863357 TTAATCTTCTGATAA CCGGATGGCG CGAAA CGTCATCCGG TTATACGTCATTAAT deoR 864150 - 863392 - | DNA-binding transcriptional repressor DeoR TERM 1094 863902 - 863913 + g 79 -3.6 -5.06414 | overlap 863904 TGTCGCAGCCAGTTT TGCC GCCC GGCG TTTTTCTTCCACCAG ybjG 864819 - 864208 - | undecaprenyl pyrophosphate phosphatase TERM 1095 864586 - 864576 - G 72 -5.4 -4.56597 | overlap 864578 GGTCGTGCGGAAAAA GATG TCC CATC GTCCAGGACACAAAC cmr 865089 - 866315 + | chloramphenicol resistance pump Cmr TERM 1096 866347 - 866321 - T 89 -6.6 -5.44119 | opp_overlap 866321 CGGAGGGTAAAAAAA TGCCTGATTG ATTTGTG CGATCAGGCA TTCTCGAATTAATGG TERM 1097 866321 - 866347 + T 70 -8.8 -3.37464 | opp_overlap 866321 CGGAGGGTAAAAAAA TGCCTGATTG ATTTGTG CGATCAGGCA TTCTCGAATTAATGG ybjH 866634 - 866356 - | hypothetical protein SFV_0829 867541 - 866726 - | hypothetical protein SFV_0830 868695 - 867541 - | putative DEOR-type transcriptional regulator TERM 1098 868329 - 868316 - G 71 -3.1 -4.85599 | gap 1 CCCAGGCTATAAAAA CCG-TG CAT CATCGG CAAAACCGTTTTATT SFV_0831 868833 - 869369 + | putative DEOR-type transcriptional regulator TERM 1099 869431 - 869395 - T 85 -3.7 -5.60689 | TTAGATAACAAAAAA CCCATCAACCTTG AACCGAAATGG CGGGGTTGATGGG CTCCACAAAATGGGG TERM 1100 869490 - 869460 - T 74 -3.3 -4.97158 | gap 1, opp_overlap 869487 GGACATCAAAGAAAA GCAGTGGCACTAAT TAAG ACTGATGCC-CTGC GGAAAAGTTCTGCGG SFV_0832 871229 - 869544 - | hypothetical protein TERM 1101 870128 - 870114 - G 83 -10 -4.09108 | opp_overlap 870113 870112 870110 GTGAATCGAGATAAA GCCGAT GCG ATCGGC GATGGTTTTTACGCG TERM 1102 870394 - 870433 + g 72 -7.8 -3.85817 | GGATCGAGTCGGGCA TGGGCGTCGGGATAGCCT ACCA ACGCTATTTCATCGCCCA TTTGTAGCACGGCAT ybjM 871499 - 871876 + | hypothetical protein TERM 1103 871902 - 871870 - T 90 -6.9 -5.40625 | opp_overlap 871878, overlap 871878 ACAGCACAGAAAAAA TCAGTAAAGCCCTCA ACG CGAGGGCTTGTCAGA CGATCAGGCGTCCAG TERM 1104 871894 - 871878 - T 80 -10.1 -3.98747 | opp_overlap 871878, overlap 871870 GAAAAAATCAGTAAA GCCCTCA ACG CGAGGGC TTGTCAGACGATCAG TERM 1105 871906 - 871918 + T 71 -3.3 -4.87133 | opp_overlap 871906 GGGCTTGTCAGACGA TCAGG CGT CCAGA TTTTCTTTCACCCAT grxA 872163 - 871906 - | glutaredoxin 1 ybjC 872323 - 872610 + | hypothetical protein mdaA 872594 - 873316 + | nitroreductase A TERM 1106 873841 - 873894 + G 76 -11 -3.27475 | gap 1, opp_overlap 873861, overlap 873839 873842 873861 CGTCGTGCTGGCGGA GACTCG-TCAGGCGGCGGAAAGCGT GATTG ACGCTTTCCGCGGTCTGAACGCGCA TATTCTGGTGCAGGA TERM 1107 873842 - 873893 + G 90 -14.5 -2.56271 | gap 1, opp_overlap 873861, overlap 873841 873839 873861 GTCGTGCTGGCGGAG ACTCG-TCAGGCGGCGGAAAGCGT GATTG ACGCTTTCCGCGGTCTGAACGCGC ATATTCTGGTGCAGG rimK 873377 - 874279 + | ribosomal protein S6 modification protein ybjN 874355 - 874843 + | putative sensory transduction regulator TERM 1108 874851 - 874894 + F 93 -14 -3.65046 | gap 1, opp_overlap 874847 874848, overlap 874851 TCCACTGATAATTCC TTTCG-AGCACGCAGTCGCTG CCG CAGTGACTGCGCGCTGCAAAA TTATCTGCTGTTTTT TERM 1109 874851 - 874893 + F 84 -14.2 -2.77401 | opp_overlap 874847 874848, overlap 874851 TCCACTGATAATTCC TTTCGAGCACGCAGTCGCTG CCG CAGTGACTGCGCGCTGCAAA ATTATCTGCTGTTTT TERM 1110 875137 - 875119 - f 82 -3.2 -5.60993 | opp_overlap 875119 GCGCCGATAAAAAAA TATGCA CGTTTAT TGCATA TCTTTCAGTGTGACA TERM 1111 876164 - 876152 - g 72 -6.9 -4.20918 | GTCAACGCCAATAAA GCAGC CAC GCCGC TGGTGAGTGCGGAAG potF 875120 - 876307 + | putrescine ABC transporter periplasmic substrate-binding protein TERM 1112 876969 - 876950 - f 71 -3.5 -4.82901 | CGCGCTGGATAAAAA GCTGCGT GACCGG ATGCAGC TTGAAGTGGTGGATA potH 877545 - 878498 + | putrescine ABC transporter membrane protein TERM 1113 879036 - 879046 + G 71 -3.2 -4.81083 | ATCGCGGTGCGACGC CGCT GAA AGTG TTTTTCGTCATTACG potI 878495 - 879340 + | putrescine ABC transporter membrane protein TERM 1114 879370 - 879394 + F 95 -12.2 -4.25104 | opp_overlap 879373, overlap 879373 GCCAACCTGGCTACA TAATGCCGCG CATGT CGCGGCATTG TTTTCATGGAAGACG TERM 1115 879373 - 879391 + F 95 -11.7 -4.25256 | opp_overlap 879373, overlap 879370 AACCTGGCTACATAA TGCCGCG CATGT CGCGGCA TTGTTTTCATGGAAG TERM 1116 879391 - 879373 - f 86 -11.7 -3.48772 | opp_overlap 879373 879370 AACCTGGCTACATAA TGCCGCG CATGT CGCGGCA TTGTTTTCATGGAAG ybjO 879400 - 879888 + | hypothetical protein rumB 879929 - 881056 + | 23S rRNA methyluridine methyltransferase TERM 1117 881074 - 881061 - T 88 -5.9 -5.5604 | TGAAGCAATAAAAAA GCCAC AGGT GCGGC TTCAGATTGCTGATC artJ 881962 - 881231 - | arginine 3rd transport system periplasmic binding protein TERM 1118 881499 - 881514 + g 75 -4.7 -4.86621 | opp_overlap 881499 AAGGCATTCTGATAA CTGTC ATAGGA GACAG TTTTTACTTCCGGGT TERM 1119 881580 - 881604 + g 77 -7.2 -4.46757 | TTTTCCATCCCAATG CGTTTGCC TTTCAGGTC GGCAAACG TTTTGTAGGTATCTT TERM 1120 882085 - 882111 + r 85 -12.4 -3.4489 | opp_overlap 882085 AATGAAATAAAAAAA GACGGATAACTT AGT GAGTTGTCCGTC TTCATTATAAGAATT TERM 1121 882111 - 882085 - R 100 -9.5 -6.01187 | opp_overlap 882085 AATGAAATAAAAAAA GACGGATAACT TAGTG AGTTGTCCGTC TTCATTATAAGAATT artM 882922 - 882254 - | arginine transporter permease subunit ArtM artQ 883638 - 882922 - | arginine transporter permease subunit ArtQ TERM 1122 883474 - 883447 - G 70 -5.6 -4.33956 | gap 1, overlap 883449 883452 GCCAAAATAGATAAA CAGCACTACCAGA ATT TCTGGCAG-GCCA CGCAGAATGGTTACC TERM 1123 883472 - 883449 - G 72 -8.2 -3.75733 | gap 1, overlap 883447 883452 CAAAATAGATAAACA GCACTACCAGA ATT TCTGGCAG-GC CACGCAGAATGGTTA TERM 1124 883594 - 883584 - G 74 -8.2 -3.99898 | opp_overlap 883590, overlap 883585 CAATCAATGCACAAA CGGC AAG GCCG ACGGTCATCCCGGCG artI 884376 - 883645 - | arginine 3rd transport system periplasmic binding protein artP 885122 - 884394 - | arginine transporter ATP-binding subunit ybjP 885855 - 885340 - | putative lipoprotein TERM 1125 887317 - 887302 - g 74 -3.2 -4.88405 | opp_overlap 887302 AATTTTGAAACAAAA CCTGTT CATT ATCAGG ATTTATTAACACGAT SFV_0851 886504 - 887715 + | hypothetical protein insB 888229 - 887726 - | IS1 ORF2 SFV_0853 888343 - 889050 + | hypothetical protein SFV_0854 889261 - 889584 + | hypothetical protein SFV_0855 889581 - 890411 + | putative regulator SFV_0856 891457 - 890408 - | putative nucleotide di-P-sugar epimerase or dehydratase TERM 1126 890544 - 890572 + g 78 -8 -4.30978 | TCAAAATTCAACTTG GAGACGCCGTAG TGGGT CAGCGGCGGCTC TTTTGCTGACTTGCG ybjT 892950 - 891520 - | putative dTDP-glucose enzyme TERM 1127 892037 - 892050 + g 84 -3.8 -5.20606 | TCGTAGCCCCAGTCG CTGG AGTTGA CCAG TTTTTCTTCCTCTTT ybjU 893962 - 892961 - | L-threonine aldolase poxB 895717 - 893999 - | pyruvate dehydrogenase TERM 1128 895840 - 895815 - R 82 -11.9 -3.38581 | overlap 895813 ACTAACGGTTAAATA GCCCGATGAAA GGAA TATCATCGGGC ATAAGGCGATTATGC SFV_0860 896818 - 895850 - | HCP oxidoreductase, NADH-dependent TERM 1129 896456 - 896444 - G 70 -10.5 -2.71119 | overlap 896426 896443 ACGCATCGACATAAT CGGCG TGA CGCCG CAGCCTGCCGCCAGC ybjW 898482 - 896830 - | hydroxylamine reductase TERM 1130 898656 - 898641 - R 72 -3.2 -4.99035 | overlap 898643 TTACGCAGAGAAAAA GGCGAT GAGG ATCGGC ACTAACAGGCTAAGA ybjE 899573 - 898626 - | putative surface protein aqpZ 900677 - 899982 - | aquaporin Z TERM 1131 900570 - 900552 - G 95 -12.4 -4.06903 | opp_overlap 900567 AACGGTCAAACCAAA TGCCAGCG CCA CGCCGGCA AAACCAATGCCTAAT insB 901232 - 900729 - | IS1 ORF2 SFV_0865 901307 - 901549 + | putative IS1 encoded protein ybjD 901878 - 903536 + | hypothetical protein ybjX 904525 - 903533 - | putative enzyme TERM 1132 903558 - 903607 + g 90 -6.6 -5.14965 | gap 3, overlap 903560 903561 AACATCGTGGCCATT TGTGGCTGAATAGCGTCGAGCATCT CAT AGC-GC-CGACGGTATTCAGCC-CG TTTTTTACTGGCGAT TERM 1133 903561 - 903605 + g 73 -11.6 -2.80472 | gap 2, overlap 903560 903558 ATCGTGGCCATTTGT GGCTGAATAGCGTCGAGCATCT CAT AGC-GC-CGACGGTATTCAGCC CGTTTTTTACTGGCG TERM 1134 904366 - 904355 - G 71 -3 -4.7373 | CGAGCGCAGCAAAAA TTTC TGGC GAAA ACTACAGCGATGCCA SFV_0868 904594 - 904728 + | hypothetical protein SFV_0869 904613 - 905755 + | macrolide transporter subunit MacA TERM 1135 906787 - 906775 - T 74 -5.5 -4.66163 | overlap 906778 ATCGCCATCCAAAAA CAACC GTG GGTCG CCTCAGCCACACCTG TERM 1136 907019 - 907051 + T 83 -13.5 -3.25823 | ATGTGGTTGGCGAGG TGATTCTGGTCGGCA ATA TGCCCGCCAGAGTCA TTGGTGTGGCGGAAG TERM 1137 907715 - 907735 + T 95 -12.6 -4.35926 | opp_overlap 907715 TTTTTGAGATAAAAA TGCCAGCC GATCG GGCTGGCA TTTTGCCTTTAGGAT TERM 1138 907735 - 907715 - T 100 -12.6 -4.96848 | opp_overlap 907715 TTTTTGAGATAAAAA TGCCAGCC GATCG GGCTGGCA TTTTGCCTTTAGGAT cspD 908026 - 907772 - | stationary phase/starvation inducible regulatory protein CspD TERM 1139 908431 - 908441 + G 77 -6.8 -4.45738 | opp_overlap 908431 TCAATGATGATTACA CTCC GAT GGAG TTTGTTATTGACGTG clpS 908319 - 908639 + | ATP-dependent Clp protease adaptor protein ClpS TERM 1140 908647 - 908634 - f 88 -8.1 -4.85599 | TGTACGCTAGAAAAA GCCTG AATG CAGGC ATAAAAATTGGGGGA TERM 1141 910852 - 910812 - g 90 -6.8 -5.11033 | opp_overlap 910814 GACAACCTGAAAAAA CCGCTCGCCAACGAAC TGCTGTTTG GTTCGCTGGTGGACGG CGGTCAGGTGACGGT clpA 908670 - 910946 + | ATP-dependent Clp protease ATP-binding subunit TERM 1142 910972 - 910999 + T 100 -12.8 -5.38054 | AGGTAGGTTGGTGAA GTCCGTAATCTC GTCA GGGGTTACGGAC TTTTTATTTATGGGG TERM 1143 911335 - 911316 - T 100 -10 -5.82388 | opp_overlap 911316 911314 AAATGCGAAAAAAAA GCTCGCAC TTTC GTACGAGC TCTTCTTTAAATATG TERM 1144 911647 - 911631 - T 100 -10.1 -5.56263 | opp_overlap 911631 ATCACAAAATAAAAA GGCCGGT TAA ACCGACC TTTTACTCGTTCTTT TERM 1145 911631 - 911647 + T 79 -7.9 -4.40037 | opp_overlap 911631 ATCACAAAATAAAAA GGCCGGT TAA ACCGACC TTTTACTCGTTCTTT infA 911908 - 911690 - | translation initiation factor IF-1 aat 912897 - 912193 - | leucyl/phenylalanyl-tRNA--protein transferase TERM 1146 912774 - 912762 - G 81 -6.3 -4.7329 | overlap 912765 AAAACCACGGAAAAA TACCA CGC TGGTA AGCCATTAACAGGCG cydC 914660 - 912939 - | cysteine/glutathione ABC transporter membrane/ATP-binding component cydD 916427 - 914661 - | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 1147 916524 - 916490 - R 74 -3.4 -5.06103 | opp_overlap 916491 916494, overlap 916494 916495 ACAACGGGGAAAAAA TAAAGGCGACCCATAG TCG CAAGGTGTCGCCTTCT TTACTTTTGTTACTG TERM 1148 916494 - 916520 + r 72 -6.4 -4.25231 | opp_overlap 916490 916494 916495, overlap 916491 CGGGGAAAAAATAAA GGCGACCCATAG TCG CAAGGTGTCGCC TTCTTTACTTTTGTT TERM 1149 916520 - 916494 - R 83 -6.4 -5.04249 | opp_overlap 916494 916491, overlap 916490 916495 CGGGGAAAAAATAAA GGCGACCCATAG TCG CAAGGTGTCGCC TTCTTTACTTTTGTT trxB 917515 - 916550 - | thioredoxin reductase TERM 1150 917378 - 917395 + g 81 -6.9 -4.66163 | overlap 917365 TTCCACTTCCGTGGT GGTGGTC AGTT GGCCGCC TTTTTCCATGCCGGT lrp 918059 - 918553 + | leucine-responsive transcriptional regulator TERM 1151 918607 - 918643 + F 79 -8.8 -4.13767 | gap 1, opp_overlap 918609 918613, overlap 918610 918613 TCCTGTTAATCCATA CAG-CAACAGTACTGGG GTAA CCTGGTACTGTTGTCCG TTTTAGCATCGGGCA TERM 1152 918610 - 918639 + F 83 -13.7 -2.75577 | opp_overlap 918609 918613, overlap 918607 918613 TGTTAATCCATACAG CAACAGTACTGGG GTAA CCTGGTACTGTTG TCCGTTTTAGCATCG TERM 1153 918613 - 918636 + F 75 -9.6 -3.52113 | opp_overlap 918609 918613, overlap 918610 918607 TAATCCATACAGCAA CAGTACTGGG GTAA CCTGGTACTG TTGTCCGTTTTAGCA TERM 1154 920474 - 920437 - g 74 -3.2 -5.00616 | opp_overlap 920443 920448, overlap 920395 920438 920439 920441 TCTGGCGTGAAAAAA GCGACACTGGCGACGG GGGCTG CCGCAACCGTTGCCGC GCCAGTCTTCAGTCT ftsK 918688 - 922794 + | DNA translocase FtsK lolA 922949 - 923560 + | outer-membrane lipoprotein carrier protein ycaJ 923571 - 924914 + | recombination factor protein RarA serS 925005 - 926297 + | seryl-tRNA synthetase TERM 1155 926337 - 926323 - f 88 -8.5 -4.74103 | opp_overlap 926323 TTCTGAATCTAAAAA GCGCC TTTAG GGCGC TTTTTTTGTCTCCCT TERM 1156 926323 - 926337 + F 100 -9.2 -5.72616 | opp_overlap 926323 TTCTGAATCTAAAAA GCGCCT TTA GGGCGC TTTTTTTGTCTCCCT dmsB 928992 - 929609 + | anaerobic dimethyl sulfoxide reductase subunit B dmsC 929611 - 930402 + | anaerobic dimethyl sulfoxide reductase subunit C TERM 1157 930408 - 930435 + T 83 -6.2 -5.04733 | opp_overlap 930413, overlap 930413 CGCAAGCTAATCAGT AACAACCGGGGT TTCG GCCCCGGTTCTC TTTTATTTCTGCTTC TERM 1158 930430 - 930413 - T 79 -9.8 -3.77722 | opp_overlap 930408 930413 GCTAATCAGTAACAA CCGGGG TTTCGG CCCCGG TTCTCTTTTATTTCT TERM 1159 930413 - 930430 + T 87 -10.5 -4.14927 | opp_overlap 930413, overlap 930408 GCTAATCAGTAACAA CCGGGGT TTCG GCCCCGG TTCTCTTTTATTTCT ycaC 931064 - 930438 - | hypothetical protein ycaD 931379 - 932527 + | MFS family transporter TERM 1160 932538 - 932569 + F 100 -7.4 -5.82036 | opp_overlap 932538 932543 TGTAAATGAATTCAA GCAAAGTGTGAA CTTACTGT TTCACACTCTGC TTTTTTGTTTCTTCT TERM 1161 932569 - 932538 - f 71 -9.6 -3.26596 | opp_overlap 932538, overlap 932543 TGTAAATGAATTCAA GCAAAGTGTGAA CTTACTGT TTCACACTCTGC TTTTTTGTTTCTTCT TERM 1162 932836 - 932809 - f 75 -9.9 -3.61398 | CCTGTCTGGCAACAA TCGCGCCCATC TATATT GATGGACACGA ACGATGAATTCCCAG TERM 1163 933176 - 933188 + G 73 -9.1 -3.62046 | opp_overlap 933169 GCTAAGCAGGCATTA CAGCC TGG GGCTG TTGTTGCCCGGATCG SFV_0890 932840 - 933514 + | ISSfl4 ORF1 SFV_0891 933511 - 933861 + | ISSfl4 ORF2 TERM 1164 934089 - 934052 - g 70 -6.2 -4.1585 | overlap 934053 934057 TCATAAGCTTGAAAA TCAGATCCGACAGGCA GAAAAA CGACTGTCGGAACTGG AAAACCGGCTGAACA TERM 1165 934111 - 934094 - g 82 -9.1 -4.19238 | overlap 934107 GTCGGAACTGGAAAA CCGGCTG AACA CAGCCAG AAATCTTCTGGAAGA SFV_0892 933858 - 934400 + | ISSfl4 ORF3 SFV_0893 934406 - 934732 + | IS629 ORF1 TERM 1166 934943 - 934931 - g 70 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SFV_0894 934863 - 935477 + | IS629 ORF2 SFV_0895 935493 - 935681 + | ISSfl4 ORF3 SFV_0896 936334 - 936068 - | putative IS1 encoded protein insB 936409 - 936912 + | IS1 ORF2 ycaN 936914 - 937702 + | putative transcriptional regulator LYSR-type SFV_0900 938156 - 938458 + | IS600 ORF1 SFV_0901 938599 - 939312 + | IS600 ORF2 TERM 1167 939682 - 939659 - T 100 -13.2 -5.4505 | opp_overlap 939659 GCGCGGAATAAAAAA GCGGCAACTC AATA AAGTTGCCGC TTTACGGGGAAATTA TERM 1168 939659 - 939682 + T 88 -12.5 -3.53761 | opp_overlap 939659 GCGCGGAATAAAAAA GCGGCAACT CAATAA AGTTGCCGC TTTACGGGGAAATTA pflA 940435 - 939695 - | pyruvate formate lyase-activating enzyme 1 TERM 1169 939759 - 939781 + g 72 -6.3 -4.34263 | overlap 939760 TCCATGGTCTCTTTC TTCGGTGGT TTAAC ACCATCGAG TTTGTATTCTTCACC TERM 1170 940130 - 940113 - G 71 -2.7 -4.75219 | gap 1 TAACGACGAACAAAA CCGT-TGG TAT CCAGACAG GTATGAATGCCTTCT TERM 1171 940258 - 940241 - G 72 -7.7 -3.87869 | opp_overlap 940241 GGAAGCGTTCATAAA GTGGCGA TAGG TCACCAC TTCCTTCATCAAATC TERM 1172 940552 - 940596 + r 82 -7.2 -4.80882 | gap 1, opp_overlap 940565, overlap 940553 940565 TGACAAAAAAGGCTC TCGTGCTAAAAAAGGCCCCAC TTTC GTGGAGCCTTTATT-GTACGC TTTTTACTGTACGAT TERM 1173 940553 - 940595 + r 79 -10.7 -3.47806 | gap 1, opp_overlap 940565, overlap 940552 940565 GACAAAAAAGGCTCT CGTGCTAAAAAAGGCCCCAC TTTC GTGGAGCCTTTATT-GTACG CTTTTTACTGTACGA TERM 1174 940565 - 940584 + r 83 -9.2 -4.33851 | opp_overlap 940565, overlap 940553 940552 TCTCGTGCTAAAAAA GGCCCCAC TTTC GTGGAGCC TTTATTGTACGCTTT TERM 1175 940584 - 940565 - R 100 -11.4 -5.00616 | opp_overlap 940553 940552 940565 TCTCGTGCTAAAAAA GGCCCCAC TTTC GTGGAGCC TTTATTGTACGCTTT pflB 942909 - 940627 - | formate acetyltransferase 1 focA 943995 - 942964 - | formate transporter TERM 1176 944175 - 944153 - R 74 -11.3 -2.86654 | opp_overlap 944153, overlap 944152 CAAATATATGTAAAG CGGGGCATT AAAAA AACGCCCCG TAATATAACTCAGAC TERM 1177 944194 - 944224 + r 70 -2.5 -5.07652 | opp_overlap 944194 944201, overlap 944199 944201 TATAACTCAGACTAA TCATTAAGCCTAC ATTGC GTAGGCTATTTGA TTTTATTTTGCCCAG TERM 1178 944199 - 944219 + r 72 -5.4 -4.41486 | opp_overlap 944194 944201, overlap 944194 944201 CTCAGACTAATCATT AAGCCTAC ATTGC GTAGGCTA TTTGATTTTATTTTG ycaO 946020 - 944227 - | hypothetical protein TERM 1179 944573 - 944583 + g 75 -6.8 -4.41047 | overlap 944568 TCGCCACCAGCCAGC GCCA GCA TGGC TTTTAATTCACCGAT TERM 1180 946143 - 946160 + H 78 -6.3 -4.62054 | CGATCTCCACCGTAT GGCATTT GATA AAGTGCC TTTTGATTTCCTTGG TERM 1181 947559 - 947538 - g 71 -3 -4.82901 | gap 1, opp_overlap 947555, overlap 947540 TGGCGCGCAGAAAAA TATC-GGCC CGGCT GGCCTGACA ATCGTCATCGTTCGT serC 946942 - 948030 + | phosphoserine aminotransferase TERM 1182 948050 - 948070 + F 100 -12.6 -5.4659 | GAAATTTTGCTTAAT CCCCACAG CCAGC CTGTGGGG TTTTTATTTCTGTTG aroA 948101 - 949384 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1183 949495 - 949520 + F 100 -9.8 -5.61596 | opp_overlap 949495 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 1184 949520 - 949495 - f 72 -9.1 -3.61398 | opp_overlap 949495 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SFV_0909 949510 - 950856 + | IS4 orf TERM 1185 950867 - 950838 - f 89 -9.3 -4.59109 | overlap 950840 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACGGCACATTGTCG TERM 1186 950865 - 950840 - f 100 -16.3 -3.90762 | overlap 950838 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACGGCACATTGT ycaL 950968 - 951756 + | putative heat shock protein TERM 1187 951872 - 951892 + F 76 -8.9 -3.66784 | opp_overlap 951885, overlap 951885 AACGATTTGTGGCGT CGGCGCGTA TAA TGCGCGCGG TTATGTTAACGGTAC TERM 1188 952248 - 952285 + G 81 -10.5 -3.57561 | opp_overlap 952214, overlap 952237 952226 AAGTCGCGGCATTCC CACGCGTTCGTGAAGCA TTAT TGCGTCGCCAACGCGCG TTTCGCGAATTACCA TERM 1189 952481 - 952469 - g 70 -6.9 -4.04806 | GCCGAGATCAAAGAA CGCGA CGA CCGCG ATCGTAACCGAGCGG TERM 1190 952589 - 952574 - g 70 -4 -4.68424 | gap 1, overlap 952583 952585 CAAGTGATTGAAAAA GCGC-TA CAA TACGCGC GCCAGAAATTGGCTC cmk 951929 - 952612 + | cytidylate kinase TERM 1191 952897 - 952887 - g 88 -8.2 -4.63527 | overlap 952888 952889 TGAGCAGTTCAAAAA CGCC CAG GGCG AGCTGGAAATCCAGG rpsA 952723 - 954396 + | 30S ribosomal protein S1 TERM 1192 954407 - 954428 + F 87 -9.5 -4.29929 | overlap 954401 AGTAATTCTCTGACT CTTCGGGAT TTTT ATTCCGAAG TTTGTTGAGTTTACT TERM 1193 954505 - 954475 - f 85 -12.7 -3.33696 | gap 1, opp_overlap 954482, overlap 954478 954482 TCGTCCTGTAATCAA GCACTAAGGGCGGC TACG GCCGCCCTTAAT-C AATGCAGCAACAGCA TERM 1194 954503 - 954478 - f 93 -15.5 -2.84098 | opp_overlap 954482, overlap 954475 954482 TCCTGTAATCAAGCA CTAAGGGCGGC TACG GCCGCCCTTAA TCAATGCAGCAACAG TERM 1195 954482 - 954499 + F 86 -14.1 -3.18264 | opp_overlap 954482 954478 954475 GTAATCAAGCACTAA GGGCGGC TACG GCCGCCC TTAATCAATGCAGCA TERM 1196 954499 - 954482 - f 90 -14.1 -3.30554 | opp_overlap 954482, overlap 954478 954475 GTAATCAAGCACTAA GGGCGGC TACG GCCGCCC TTAATCAATGCAGCA ihfB 954556 - 954840 + | integration host factor subunit beta TERM 1197 954870 - 954885 + F 87 -6.8 -5.20154 | opp_overlap 954870, overlap 954862 TTGAACGCGAGAAAA GCATCC TGTC GGGTGC TTTTTTCAATTCTCT TERM 1198 956033 - 956059 + G 84 -3.6 -5.22312 | overlap 956036 956037 956054 CGCAAAGTTTATGGC TCTCTGCCGC TGCGGTC GCGGCACTGA TTTTTTGGTATCAGT ycaI 955438 - 956634 + | hypothetical protein TERM 1199 958186 - 958199 + G 77 -6.7 -4.44211 | GGATAACCTGACTGC CGGTA CGAT TACCG TTGTTTTCTCTTCAA msbA 957344 - 959092 + | lipid transporter ATP-binding/permease protein TERM 1200 959124 - 959143 + G 75 -11.4 -2.88677 | overlap 959126 TGGTGAATCCCCTTT GTGGCGGC TATT GCTGCCAC TCTCCTGGTTGTATG TERM 1201 959224 - 959200 - g 75 -5.5 -4.61873 | overlap 959205 TGCTATAAACTAAAA CTGAAGCGCGC TTG GCGTGCCCCCG TACCGGTTGTCGTGG TERM 1202 959495 - 959485 - g 70 -6.8 -4.09685 | TCTGATGCGGTAAAA GCCA TTC TGGC GCAACACCCTGATGT TERM 1203 959793 - 959817 + G 74 -2.9 -5.0133 | gap 2, overlap 959793 959794 ACATGTAGTGGCGAT G-GCGG-GGAT TGGGC ATCCGCCGCGC TTTTTTGCCACGCTG lpxK 959089 - 960075 + | tetraacyldisaccharide 4'-kinase TERM 1204 961010 - 961021 + G 74 -2.2 -5.10154 | gap 1, opp_overlap 961010 TCTGGGATCGCAAAC GC-GC AGA GCAGC TTTTTGATTTTAGCT TERM 1205 961070 - 961080 + G 70 -6.8 -4.00512 | opp_overlap 961069 961070 CCCCAGCGCCGAAAC GCCA GTA TGGC TATTTTGTTCTGCCA ycaQ 960112 - 961344 + | hypothetical protein ycaR 961396 - 961578 + | hypothetical protein kdsB 961575 - 962321 + | 3-deoxy-manno-octulosonate cytidylyltransferase SFV_0920 962475 - 963368 + | hypothetical protein ycbC 964124 - 963345 - | hypothetical protein TERM 1206 964806 - 964791 - g 100 -2.4 -5.93252 | overlap 964793 CCGAAAAAGAAAAAA CGGACG CTTT CGCCAG ATTATCCACGCGACC smtA 964260 - 965045 + | putative metallothionein SmtA TERM 1207 966182 - 966153 - gf 70 -5.7 -4.36914 | gap 1, opp_overlap 966180 TTGCCGTGTACAAAA CCAGA-CAAGTGCC GCT GGATCTTGGTCTGG TGGTACGCGAATATC TERM 1208 966212 - 966237 + GF 81 -10.5 -3.58505 | gap 1, opp_overlap 966208, overlap 966180 966208 CTGTCACAGTATCCG CGTGC-ACGTCA CTT TGACGTTGCGCG TATTGTTATTGATCA mukF 965042 - 966364 + | condesin subunit F TERM 1209 966416 - 966431 + GF 74 -10.4 -3.17075 | GAATCCGTTATTTCC GGCGCT GGAC AGCGCC TTACGTTCAGGCCGC mukE 966318 - 967049 + | condesin subunit E TERM 1210 968284 - 968238 - g 70 -6.5 -4.15565 | gap 1, opp_overlap 968230, overlap 968242 TGGACGAGCTGAAAA GCCAGCTTGCT-GACTACCAGC AGGC GCTGGACGTCCAGCAAACGCGC GCGATCCAGTATAAC TERM 1211 968436 - 968421 - g 81 -4.7 -5.10497 | AAGCGACTGAAAAAA TGCTC TCTCTT GAGCA GAAAATGAGCATGGC TERM 1212 970443 - 970429 - g 72 -8.5 -3.82202 | opp_overlap 970440 CATGGTGAAAGATAA CGGCG TTGAG CGCCG CTTACACCGTCGTGA TERM 1213 970899 - 970863 - g 72 -11 -3.05844 | gap 1, overlap 970894 TTGGTCAGGTGAACA GCGTGCGTCTCAACG TGAACGTG CGT-GAAACGCACGC CATGCTGCTGGATGT mukB 967049 - 971509 + | cell division protein MukB TERM 1214 971537 - 971512 - f 73 -7.5 -4.1899 | opp_overlap 971516, overlap 971516 CCAGGCGAGTTAAAA TTAAGGCGGCA GCAA TGCCGCCTTTT CTTTTTCCGAAAACT TERM 1215 971533 - 971516 - f 93 -12.7 -3.69605 | opp_overlap 971516, overlap 971512 GCGAGTTAAAATTAA GGCGGCA GCAA TGCCGCC TTTTCTTTTTCCGAA TERM 1216 971516 - 971533 + F 100 -12.7 -5.26119 | opp_overlap 971516 971512 GCGAGTTAAAATTAA GGCGGCA GCAA TGCCGCC TTTTCTTTTTCCGAA TERM 1217 971664 - 971639 - f 72 -9.1 -3.61398 | opp_overlap 971639 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT TERM 1218 971639 - 971664 + F 100 -9.8 -5.61596 | opp_overlap 971639 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT SFV_0926 971654 - 973000 + | IS4 orf TERM 1219 973011 - 972982 - f 89 -9.3 -4.59109 | overlap 972984 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACACATAACGGCGC TERM 1220 973009 - 972984 - f 100 -16.3 -3.90762 | overlap 972982 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACACATAACGGC ycbB 973208 - 975055 + | hypothetical protein ycbK 975237 - 975785 + | hypothetical protein TERM 1221 975918 - 975879 - g 76 -7.7 -4.15044 | gap 1, overlap 975880 TCTGGTGTGAACAAA CCCGCTTGGCCGCACTGG TCGAT CCTG-GCGGCGATGCGGA AAAAATCAAACAGGA ycbL 975812 - 976459 + | hypothetical protein TERM 1222 976644 - 976668 + T 70 -5 -4.42235 | gap 1, overlap 976639 976647 CGTTTGTCATCAGTC TCA-GCCCGCT TTTC AGCGGGCTTCA TTGTTTTTAACGCTT TERM 1223 976647 - 976664 + T 93 -12.7 -3.74868 | overlap 976644 976639 TTGTCATCAGTCTCA GCCCGCT TTTC AGCGGGC TTCATTGTTTTTAAC aspC 977872 - 976682 - | aromatic amino acid aminotransferase TERM 1224 978010 - 978025 + r 100 -9 -5.07107 | opp_overlap 978010 AAGGCATAAAAAAAA CAGGAC CAAC GTCCTG TTTTTTCGGCATTTA TERM 1225 978025 - 978010 - R 100 -9 -5.97575 | opp_overlap 978010 AAGGCATAAAAAAAA CAGGAC CAAC GTCCTG TTTTTTCGGCATTTA ompF 979145 - 978057 - | outer membrane protein F TERM 1226 978577 - 978597 + g 70 -4.7 -4.57569 | gap 1, opp_overlap 978562 978554 978577, overlap 978579 CCGTCGCCGTTAGAA CG-GCGTG CAGTGT CACGCTCG TTTTTACCCAGGTAC TERM 1227 979571 - 979595 + r 76 -2.1 -5.28176 | opp_overlap 979571 979575 CAGCTAAGAAAAAAC TAATCCGCAAT AAG AGTACGGGTTA TTTTTTGTGCGTAAA TERM 1228 979731 - 979712 - R 100 -13.6 -5.43621 | opp_overlap 979712 AGAAAGGATAAAAAA GAGCCAGC AGGC GCTGGCTC TTTGAGGAAGAAAAT TERM 1229 979712 - 979731 + r 93 -13.6 -3.53091 | opp_overlap 979712 AGAAAGGATAAAAAA GAGCCAGC AGGC GCTGGCTC TTTGAGGAAGAAAAT asnC 981146 - 979746 - | asparaginyl-tRNA synthetase TERM 1230 981306 - 981289 - R 100 -9.1 -5.22943 | opp_overlap 981286 ATTAAAGGTAAAAAA GGGAGCC GATT AGCTCCC TGATGATATTAACTG pncB 982565 - 981315 - | nicotinate phosphoribosyltransferase TERM 1231 984827 - 984817 - g 72 -6.8 -4.19472 | GAAGATATTGCAAAA CGCA CTC TGCG TAATGCCTGCCTGCG TERM 1232 984922 - 984934 + G 78 -9.1 -3.86822 | overlap 984924 AACAATATGACCGAT GCGCT GGC AGCGC TTTCTGCGGCGGTTG TERM 1233 985328 - 985316 - g 70 -4.7 -4.47328 | overlap 985317 AACGTCAGGAGAAAA TGCGC GCG GCGCT GGAACAGTTGAAAGG pepN 982783 - 985398 + | aminopeptidase N TERM 1234 985449 - 985415 - T 76 -8.5 -4.18197 | opp_overlap 985423 985425, overlap 985416 ACTTTTGAGCCAAAA TGCCTGATGCGACGC TTGAC GCGTCTTATCAGGCC TACAACTCCGTTGAA TERM 1235 985448 - 985416 - T 78 -12 -3.10597 | opp_overlap 985423 985425, overlap 985415 CTTTTGAGCCAAAAT GCCTGATGCGACGC TTGAC GCGTCTTATCAGGC CTACAACTCCGTTGA ssuB 986372 - 985605 - | aliphatic sulfonates transport ATP-binding subunit ycbM 987022 - 986369 - | putative transport system permease protein SFV_0937 987836 - 986997 - | IS2 ORF2 SFV_0938 988225 - 987860 - | insertion sequence 2 OrfA protein ycbN 989653 - 988508 - | alkanesulfonate monooxygenase ycbO 990651 - 989650 - | alkanesulfonate transporter substrate-binding subunit TERM 1236 989694 - 989706 + gr 74 -3.3 -5.00616 | GCTGCCAGATGCGCT GGCGA ATA TCGAC TTTTTTCGGCACCAG ycbP 991177 - 990602 - | NAD(P)H-dependent FMN reductase SFV_0942 991416 - 991096 - | putative IS1 encoded protein insB 991509 - 992012 + | IS1 ORF2 SFV_0944 992301 - 992771 + | putative fimbrial-like protein insB 993058 - 992765 - | IS1 ORF2 insB 993268 - 993095 - | IS1 ORF2 SFV_0947 993343 - 993543 + | putative IS1 encoded protein TERM 1237 993653 - 993691 + F 70 -2.5 -5.03314 | gap 1, opp_overlap 993658, overlap 993655 993659 993660 993661 ATTAATTGTTTTATT AATTAGTA-CCCCTCTAG TGTT CTGGAGGGGATATTCATA TTTTTTAAGAGTGAC TERM 1238 993659 - 993685 + F 72 -8.1 -3.66995 | gap 1, opp_overlap 993658, overlap 993655 993653 993660 993661 TGTTTTATTAATTAG TA-CCCCTCTAG TGTT CTGGAGGGGATA TTCATATTTTTTAAG TERM 1239 993660 - 993683 + F 70 -8.8 -3.39574 | opp_overlap 993658, overlap 993659 993655 993653 993661 GTTTTATTAATTAGT ACCCCTCTAG TGTT CTGGAGGGGA TATTCATATTTTTTA TERM 1240 993661 - 993682 + F 78 -12.3 -2.62118 | opp_overlap 993658, overlap 993660 993659 993655 993653 TTTTATTAATTAGTA CCCCTCTAG TGTT CTGGAGGGG ATATTCATATTTTTT ycbR 993712 - 994413 + | putative chaperone TERM 1241 995356 - 995346 - g 72 -5.4 -4.47217 | opp_overlap 995346 AACGATTAAGCAAAA TGGT TAC ACCA TTTACCAAACTTATG ycbS 994438 - 997038 + | putative outer membrane protein SFV_0950 997092 - 998012 + | hypothetical protein SFV_0951 998110 - 998652 + | putative fimbrial-like protein TERM 1242 998803 - 998832 + GF 88 -2.1 -5.52384 | gap 1, overlap 998804 TAGCAAGCAAATCAA TGTG-CAGTTAGGC GAT GTCTCGCTGACACG TTTTTTTCATGGGAA SFV_0952 998660 - 999175 + | putative fimbrial-like protein ycbF 999141 - 999878 + | hypotheical protein TERM 1243 1000601 - 1000588 - g 72 -5.3 -4.47707 | CGCGATTAAAAATAA GCAAA ATGA TTTGC AAGCGATGCACCATA pyrD 999989 - 1000999 + | dihydroorotate dehydrogenase 2 ycbW 1001137 - 1001715 + | hypothetical protein SFV_0956 1002821 - 1001712 - | hypothetical protein TERM 1244 1002302 - 1002319 + g 75 -5.5 -4.62069 | opp_overlap 1002293 1002294 CGGAAACCACCAGAT TGGGGCG GAAT TGCTCCA TTTTTACACTGGCCG TERM 1245 1004547 - 1004531 - g 70 -3.7 -4.6902 | CCATAAGGGCAAAAA CCAGT ACCAGAA ACTGG GCGAGAAGGGCGAGT ycbY 1003065 - 1005173 + | 23S rRNA m(2)G2445 methyltransferase TERM 1246 1006827 - 1006815 - g 82 -2.6 -5.40072 | overlap 1006823 CTGCGGTGAAAAAAA GCGA AGAAG CCGC CGCGCCAAAAGCAGA uup 1005185 - 1007092 + | ABC transporter ATPase component TERM 1247 1007166 - 1007138 - f 83 -8.9 -4.21936 | overlap 1007139 CTGACAACGGTAAAA TTGCCTGATGAAC TGG GTTTATCAGGCAT GAAAACCAACACTTT TERM 1248 1007165 - 1007139 - f 81 -12.4 -3.1268 | overlap 1007138 TGACAACGGTAAAAT TGCCTGATGAAC TGG GTTTATCAGGCA TGAAAACCAACACTT TERM 1249 1007620 - 1007636 + G 72 -4.3 -4.62069 | opp_overlap 1007620 GGTCCGTTTAAAAGA GCAACTG GCA CGGGTGC TTTTTCAACTCAAAA TERM 1250 1007722 - 1007754 + G 71 -3.3 -4.84146 | overlap 1007727 GATGGCTTACGGCAG CATTGGGGTAGGCAG CAG CTTTCTCCCCTGGTG TTTATTTTGTGTCCT pqiA 1007222 - 1008475 + | paraquat-inducible protein A TERM 1251 1009270 - 1009284 + G 70 -4.3 -4.58424 | GGCAGCCAGTGGCAC CGAAA ACAGC TTTCG TTTTGTATGATGATC pqiB 1008480 - 1010120 + | paraquat-inducible protein B ymbA 1010117 - 1010680 + | hypothetical protein TERM 1252 1010703 - 1010729 + T 100 -10.8 -6.02919 | opp_overlap 1010703 GATTTGTAAATATAA CCGTCTCCGGTA TGT TGCCTGAGGCGG TTTTTTTGTTTCTAA TERM 1253 1010869 - 1010895 + T 72 -3 -5.07652 | overlap 1010870 1010871 CGCGGTATTGCTTAA CTGTGATTGC ACATTTA GTAATCACTG TTTTCTTTTCCACCA TERM 1254 1011118 - 1011148 + T 79 -8.2 -4.34345 | opp_overlap 1011121 1011125, overlap 1011120 1011125 ATTCTGTCTCTTTAA AAAGAAACCTCCGC ATT GCGGAGGTTTCGCC TTTTGATACTCTGTC TERM 1255 1011120 - 1011146 + T 90 -15.2 -2.51207 | opp_overlap 1011121 1011125, overlap 1011118 1011125 TCTGTCTCTTTAAAA AGAAACCTCCGC ATT GCGGAGGTTTCG CCTTTTGATACTCTG TERM 1256 1011145 - 1011121 - T 100 -18.7 -4.56597 | opp_overlap 1011120 1011118 1011125, overlap 1011125 CTGTCTCTTTAAAAA GAAACCTCCGC ATT GCGGAGGTTTC GCCTTTTGATACTCT TERM 1257 1011125 - 1011141 + T 100 -13.7 -3.77484 | opp_overlap 1011121 1011125, overlap 1011120 1011118 CTCTTTAAAAAGAAA CCTCCGC ATT GCGGAGG TTTCGCCTTTTGATA TERM 1258 1011141 - 1011125 - T 100 -13.7 -4.85782 | opp_overlap 1011125 1011120 1011118, overlap 1011121 CTCTTTAAAAAGAAA CCTCCGC ATT GCGGAGG TTTCGCCTTTTGATA fabA 1011691 - 1011173 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase SFV_0963 1013520 - 1011760 - | putative ATP-dependent protease ycbG 1013705 - 1014157 + | hypothetical protein TERM 1259 1014222 - 1014186 - T 95 -13.2 -3.794 | gap 1, opp_overlap 1014197, overlap 1014197 GTTCAATTTACTAAA GGCAAAAAAAACCCCGC AGCA GCGGGGTTTTTCT-ACC AGACGATAACTTAAG TERM 1260 1014212 - 1014197 - T 100 -11.8 -5.89947 | opp_overlap 1014197, overlap 1014186 TAAAGGCAAAAAAAA CCCCGC AGCA GCGGGG TTTTTCTACCAGACG TERM 1261 1014197 - 1014212 + T 100 -11.8 -4.82901 | opp_overlap 1014197 1014186 TAAAGGCAAAAAAAA CCCCGC AGCA GCGGGG TTTTTCTACCAGACG ompA 1015279 - 1014233 - | outer membrane protein A TERM 1262 1015546 - 1015534 - R 100 -4.7 -6.02914 | overlap 1015535 TTTACAGAAAAAAAA CGCGG AAA CCGCT TCAGACAAGCCTTCG TERM 1263 1015545 - 1015535 - R 79 -8.2 -4.20122 | overlap 1015534 TTACAGAAAAAAAAC GCGG AAA CCGC TTCAGACAAGCCTTC sulA 1016144 - 1015635 - | SOS cell division inhibitor SFV_0968 1016864 - 1017229 + | insertion sequence 2 OrfA protein SFV_0969 1017253 - 1018092 + | IS2 ORF2 SFV_0970 1020453 - 1018291 - | hypothetical protein TERM 1264 1019046 - 1019020 - G 77 -2.9 -5.16572 | gap 1, overlap 1019022 1019025 1019037 1019038 1019040 ACGGAAGGCAAAAAA GAGCACGCCGGT AATA ACCAGCA-GCAC CAGCTGCCCTTCCAG TERM 1265 1019188 - 1019177 - G 72 -4.4 -4.62441 | TGGCAGACAAACAAA CTTG TCAG CAAG ATCCAATACCCGTGA TERM 1266 1019598 - 1019573 - G 74 -8.3 -3.95554 | gap 1, overlap 1019575 TGACGCAACAAAATA CA-GCGTGACAG TTG CTGGCACGCCTG GCCCTGCATCGACAT TERM 1267 1019595 - 1019575 - G 78 -11.1 -3.55864 | overlap 1019573 ACGCAACAAAATACA GCGTGACAG TTG CTGGCACGC CTGGCCCTGCATCGA yccF 1020909 - 1020463 - | hypothetical protein TERM 1268 1020495 - 1020507 + g 71 -9.1 -3.52906 | overlap 1020492 GTGCATTGGCTTCAC GCGCA GCT TGCGC TGTTTCTACCGATAC TERM 1269 1020830 - 1020816 - G 75 -5 -4.74103 | GCGGTAAGGTAAAAA TCAGCA CAA TACTGA CCAGAGTCGCCAACA helD 1020963 - 1023086 + | DNA helicase IV TERM 1270 1023110 - 1023091 - T 100 -13.6 -4.24711 | opp_overlap 1023087 1023084 GAAAACCGTAAGAAA CAGGTGGC GTTT GCCACCTG TGCAATATTACTTCA mgsA 1023585 - 1023118 - | methylglyoxal synthase SFV_0974 1024334 - 1023672 - | hypothetical protein TERM 1271 1024685 - 1024667 - g 77 -8.8 -4.08064 | AAGTTGCCGGCAAAA CGCTGCTG GGC CAGCAGGG GTATGGCACGCTGGC SFV_0975 1024426 - 1024920 + | hypothetical protein TERM 1272 1024925 - 1024952 + T 100 -17.1 -4.1673 | opp_overlap 1024925 TGGCCAAATAAAAAA TCCCCGGAAGG CAAAAA CCTTCCGGGGA TTTGTTCAGGGATTA TERM 1273 1024952 - 1024925 - T 100 -17.8 -5.63517 | opp_overlap 1024925 TGGCCAAATAAAAAA TCCCCGGAAGGC AAAA ACCTTCCGGGGA TTTGTTCAGGGATTA yccV 1025333 - 1024965 - | hypothetical protein SFV_0977 1026515 - 1025340 - | putative oxidoreductase TERM 1274 1025455 - 1025476 + g 72 -5.9 -4.40358 | gap 1, opp_overlap 1025459, overlap 1025459 ACATCACGACCGGCA TCAATTGCGG CAT CCGCGAT-GA TTTTCTGAAATAAAT yccK 1027286 - 1026900 - | sulfurtransferase TusE TERM 1275 1026964 - 1026995 + g 91 -8 -5.06414 | TTAGCCGGGCCTTTC GGGAACAGTCGGTA TAAA TAGCGGCTGTTACC TTTTTCTTCACCAAA TERM 1276 1027300 - 1027274 - G 100 -10.1 -5.46657 | CAGTGTAACAAAAAA CAAAGCCCCGC ATAAA GCGAGGCTATG AAAGTGTTAGCGGGT yccA 1027979 - 1027320 - | hypothetical protein TERM 1277 1027761 - 1027774 + g 70 -5.2 -4.42386 | GGAGATAATCCCGGT CGGC TTATTC GCCG TTTTATAGGTCAGGA TERM 1278 1028148 - 1028180 + H 77 -9.2 -3.90744 | opp_overlap 1028153, overlap 1028153 TTCGACAGGCAAAAG AAAAAGGGGTTAGC ATTTA GCTAACCCCTTATC TTATTTGGCGGAAGC TERM 1279 1028153 - 1028175 + H 95 -13.5 -3.90464 | opp_overlap 1028153, overlap 1028148 CAGGCAAAAGAAAAA GGGGTTAGC ATTTA GCTAACCCC TTATCTTATTTGGCG TERM 1280 1028175 - 1028153 - H 100 -13.5 -5.48213 | opp_overlap 1028148 1028153 CAGGCAAAAGAAAAA GGGGTTAGC ATTTA GCTAACCCC TTATCTTATTTGGCG hyaA 1028729 - 1029817 + | hydrogenase-1 small subunit TERM 1281 1030002 - 1030023 + G 72 -10.1 -3.35371 | gap 1, overlap 1030022 CATCCTGCAAGGGCG CGACCCGCGC GAT GCGTGGG-CG TTCGTTGAACGTATC TERM 1282 1031025 - 1031011 - g 88 -11.4 -3.72893 | TACTCGTGGATCAAA GCGCCA CGC TGGCGC GGTAACGCGATGGAA hyaB 1029814 - 1031607 + | hydrogenase 1 large subunit hyaC 1031626 - 1032333 + | hydrogenase 1 b-type cytochrome subunit hyaD 1032330 - 1032917 + | hydrogenase 1 maturation protease hyaE 1032914 - 1033312 + | hydrogenase-1 operon protein HyaE TERM 1283 1033887 - 1033909 + G 83 -6.2 -4.9792 | opp_overlap 1033888, overlap 1033888 TAATCTGACGCAATT ACCCATCAGC GAG GCTGATCGGC TTTTTCTCTCACGTC TERM 1284 1033888 - 1033908 + G 77 -9.7 -3.58029 | opp_overlap 1033888, overlap 1033887 AATCTGACGCAATTA CCCATCAGC GAG GCTGATCGG CTTTTTCTCTCACGT hyaF 1033309 - 1034166 + | nickel incorporation into hydrogenase-1 proteins TERM 1285 1034737 - 1034772 + G 70 -5.4 -4.34402 | gap 1, opp_overlap 1034737 ATTGTGGATATTGAA TGC-CAACGGTTGGATG CAA TACCCGACCGGTGCGCA TTTTGATATCGACAC TERM 1286 1034803 - 1034824 + G 78 -10.9 -3.54424 | opp_overlap 1034805 CCTGCGTATGGAGAT GACCAGCTT CAGC GAGCTGGTC TTTAACCCGGTCAGC TERM 1287 1035216 - 1035206 - g 77 -8.2 -4.0942 | CACTCATTAGATAAA CCCG TGC CGGG TCTGAAGAATTTGAT appC 1034300 - 1035844 + | third cytochrome oxidase, subunit I appB 1035856 - 1036992 + | third cytochrome oxidase, subunit II TERM 1288 1037138 - 1037105 - f 81 -13.1 -2.60988 | overlap 1037102 1037101 AAGTTAACGAACGTA GGCCTGATGCGGCGC ATTA GCATCGCATCAGGCA ATCAATAATGTTAGA TERM 1289 1037544 - 1037530 - g 77 -10 -3.65542 | overlap 1037528 CGTACCCGTAAAACA GGCGAA GCC TTCGCC GCCGGGCTGGCACCT appA 1037176 - 1038474 + | phosphoanhydride phosphorylase TERM 1290 1038509 - 1038486 - T 100 -14 -5.31456 | opp_overlap 1038491 GTAATGCATAAAAAA GAGCATTCAG TTAC CTGAATGCTC TGAGGCTGATGACAA TERM 1291 1038568 - 1038557 - T 71 -7.2 -4.16943 | opp_overlap 1038544 GCGTAGACCGGAAAA GGCG TTCA CGCC GCATCCGGTCACTTT yccC 1040769 - 1038589 - | cryptic autophosphorylating protein tyrosine kinase Etk TERM 1292 1039714 - 1039728 + g 72 -5.6 -4.56597 | overlap 1039716 GCGTTTGCGTTCTTG CTCCAG CGT CTGGCG TTTTTCCAGCAGCGC etp 1041247 - 1040789 - | phosphotyrosine-protein phosphatase TERM 1293 1040876 - 1040890 + g 70 -6.4 -4.1891 | opp_overlap 1040876, overlap 1040872 TTGACTTTTACGATA GGGATC CGG GATCTC TTTCTGTTCCAGCCA TERM 1294 1041181 - 1041162 - G 72 -11.4 -2.50816 | overlap 1041161 CGTTTACGCAGCAAG CGCTCGCC AATG GGCGAACG GCAAATGTTGCCGGT yccZ 1042383 - 1041223 - | putative function in exopolysaccharide production ymcA 1044504 - 1042408 - | hypothetical protein ymcB 1045250 - 1044504 - | hypothetical protein ymcC 1045891 - 1045247 - | putative regulator ymcD 1046321 - 1045998 - | hypothetical protein cspH 1046957 - 1046745 - | cold shock-like protein SFV_0998 1047431 - 1047198 - | putative IS1 encoded protein insB 1047506 - 1048009 + | IS1 ORF2 cspG 1048031 - 1048231 + | cold shock protein CspG TERM 1295 1048436 - 1048452 + F 100 -9.4 -5.4251 | opp_overlap 1048436 1048433 CACAAAATAATATCA GGCTCC CTCGT GGAGCC TTTTTTATATCTGCC gnsA 1048625 - 1048798 + | GnsA protein yccM 1049920 - 1048847 - | hypothetical protein TERM 1296 1049883 - 1049904 + g 100 -2.9 -5.71712 | gap 1, overlap 1049887 1049888 CCGCCCGTCGTGCCT GGCCGCCGCT GCC AGCGG-GTTC TTTTTTTCTCTGCCA TERM 1297 1049887 - 1049901 + g 80 -5.6 -4.92669 | overlap 1049883 1049888 CCGTCGTGCCTGGCC GCCGCT GCC AGCGGG TTCTTTTTTTCTCTG TERM 1298 1049888 - 1049900 + g 71 -9.1 -3.53161 | overlap 1049887 1049883 CGTCGTGCCTGGCCG CCGCT GCC AGCGG GTTCTTTTTTTCTCT torS 1052472 - 1050022 - | sensor protein torS TERM 1299 1050422 - 1050434 + gH 76 -9.1 -3.76402 | AATAGTGAACTGGTA CGCTG GCG CAGCG TTTCGTCAATGACAT TERM 1300 1053359 - 1053386 + Gr 72 -5.6 -4.48987 | gap 1 CAATTACAGGGGCAA TCGGT-GTCTGAT AAT GTCAGCCCACCGA TTTTAGTTCTGACGC torT 1052471 - 1053499 + | periplasmic sensory protein associated with the TorRS two-component regulatory system torR 1054164 - 1053472 - | DNA-binding transcriptional regulator TorR torC 1054251 - 1055423 + | trimethylamine N-oxide reductase, cytochrome c-type subunit TERM 1301 1055785 - 1055796 + G 72 -5.8 -4.38712 | CGACACCTCCCAGCG CGGT GATA ACCG TTTTGTGCGCGTGAG TERM 1302 1056198 - 1056188 - g 72 -6.8 -4.21908 | overlap 1056195 TACGAGCAGCTAAAA GCGA AAG TCGC CGCCGGTGAAATTGA torA 1055423 - 1057969 + | trimethylamine N-oxide reductase subunit TERM 1303 1058125 - 1058107 - T 86 -13.1 -3.36823 | opp_overlap 1058103, overlap 1058102 TTGCTGAAAAGCGAA CCGCCGC TCACT GCGGCGG TGAATGATCTGGAAA insB 1058675 - 1058172 - | IS1 ORF2 SFV_1010 1058750 - 1058935 + | putative IS1 encoded protein TERM 1304 1059233 - 1059212 - T 70 -2.2 -5.00616 | GTTTGCGGCAAAAAA CACTGACG GCGCTG CGGCAATG GTTACCAGAGTTTGC TERM 1305 1059378 - 1059364 - T 71 -7.1 -4.08216 | opp_overlap 1059353 1059352 1059355 1059354 TTATGCGCCTGAAAA GACGC GTTTA GCGTC GCATCAGGCATTATG TERM 1306 1059456 - 1059486 + T 83 -14 -2.73364 | opp_overlap 1059454 1059453, overlap 1059462 ATGAGCTACAAACCG GGAAAGCCGCTGGC GTA GCAGGCGGTTTTCC TGCTTCAGGTGCGCA yccD 1059740 - 1059435 - | chaperone-modulator protein CbpM TERM 1307 1059462 - 1059480 + g 78 -8 -4.3534 | opp_overlap 1059454 1059453, overlap 1059456 TACAAACCGGGAAAG CCGCTGGC GTA GCAGGCGG TTTTCCTGCTTCAGG cbpA 1060660 - 1059740 - | curved DNA-binding protein CbpA TERM 1308 1059860 - 1059874 + g 86 -6.4 -5.14563 | overlap 1059869 TTTCAGTACCGCATA CAGATC GCC GGTCTG TTTTTTGCTCACCAG TERM 1309 1060380 - 1060360 - G 72 -6.9 -4.18494 | CATGCTGACCGAAAA TTGACGAGA AGA TATCGTCAA AATCTTCGGCATTAA TERM 1310 1061852 - 1061842 - g 91 -5.4 -5.37345 | opp_overlap 1061842 TTGAATGACAAAAAA TGCA TAC TGCA TTTACCCGAGTTTAT yccE 1060921 - 1062177 + | hypothetical protein TERM 1311 1062321 - 1062349 + F 93 -10.3 -4.61633 | opp_overlap 1062323 GAGGCAGGGGCTAAT CAGGCATAGTTTG CGT CAAACCTTGCCTG TTTTTGAAGATGTAT TERM 1312 1062910 - 1062894 - g 87 -4.3 -5.19212 | ATCACCAGGAAAAAA TGGGCAC TAT GGACCCA ACCTTTAACCCGATG agp 1062470 - 1063711 + | glucose-1-phosphatase/inositol phosphatase TERM 1313 1063741 - 1063719 - T 100 -16.3 -4.84673 | opp_overlap 1063715 TGAAATAACAGAAAA CTCCCCCGC GAGAA GCGGGGGAG TCGCTGGTTAAACGT yccJ 1063976 - 1063749 - | hypothetical protein wrbA 1064593 - 1063997 - | TrpR binding protein WrbA TERM 1314 1064913 - 1064898 - g 76 -7.6 -4.19817 | opp_overlap 1064905 CCCACGTAGCGAAAA TATGGC AGCC GCCATA CGCCGCGTTAATTCT ycdF 1064803 - 1065033 + | hypothetical protein TERM 1315 1065129 - 1065146 + T 100 -14.1 -4.84918 | opp_overlap 1065126 GTCAAAAAGTCATCA CCGCCGG TAAC CCGGCGG TTTTCTGTTTATGGC ycdG 1066483 - 1065155 - | putative transport protein SFV_1019 1066998 - 1066504 - | hypothetical protein SFV_1020 1067599 - 1067009 - | hypothetical protein TERM 1316 1067168 - 1067157 - G 70 -7.2 -4.11216 | overlap 1067158 TGTTGACGGTCAAAA CCCG ACAT CGGG CCGGTATCCAGTCCC SFV_1021 1068409 - 1067609 - | putative acetyltransferase SFV_1022 1068803 - 1068417 - | hypothetical protein SFV_1023 1069510 - 1068815 - | putative synthetase TERM 1317 1069021 - 1068986 - G 87 -4.6 -5.24531 | gap 1, opp_overlap 1068993, overlap 1068987 ATGCTCCAGAAAAAA GCCATCGCGTAGCGTCG ATT CGACGC-AGACGTTGGT AGCGATACCGGTGAA SFV_1024 1070601 - 1069507 - | hypothetical protein TERM 1318 1070962 - 1070949 - g 82 -2.3 -5.45652 | overlap 1070935 AGCGCGAAGAAAAAA GCGAT TCTT AGCGC AGCACTGGACACTTT TERM 1319 1071354 - 1071309 - g 74 -8.3 -3.99405 | gap 1, opp_overlap 1071309 TTAATTGATGAGAAA TCGGCGC-TGATTGCCGGTT GGGTCAA AAGCGGCAAACTCGCGCCGA TTGATCCGCAGCATT ycdC 1070886 - 1071524 + | putative tet operon regulator TERM 1320 1071554 - 1071531 - T 74 -11 -2.85297 | opp_overlap 1071526 1071526 1071552, overlap 1071528 1071526 CCACGTTAAAGATGA CGGAGGAGGT TGTA ACATCCTCCG GCTACCTGTTTAACC TERM 1321 1071598 - 1071583 - T 83 -10.4 -3.73775 | opp_overlap 1071592 CCGATCGTCATTAAA CTGGCG TTAC CGCCAG CGGCAGCGGTATTCA SFV_1026 1072891 - 1071818 - | IS91 orf TERM 1322 1072593 - 1072608 + g 73 -9 -3.63805 | ATCCCCGGCTCCACA TCTGCC TGAT GGCAGA TTTCCAGTATCACAT TERM 1323 1072918 - 1072939 + r 71 -7.2 -4.06419 | opp_overlap 1072915 CTGATTCAATTACCA CCGGACGG ACTGCC CCTTCCGG TTGTTTCTCCAGCCA SFV_1027 1073370 - 1073005 - | putative IS91 ORF2 TERM 1324 1073249 - 1073263 + g 74 -10 -3.44284 | opp_overlap 1073248 1073249, overlap 1073248 TCAAAACTATCAAAG CGCAGA ACT TCTGCG TCTTCTTCGTCAAAA SFV_1028 1073540 - 1074133 + | putative cytochrome TERM 1325 1075143 - 1075124 - g 72 -5 -4.6902 | opp_overlap 1075138 CCACAACTGCAAAAA GCCAAC CCGGAACT GTTGGC AAAAGTCGATGCCAA ycdO 1074191 - 1075318 + | hypothetical protein TERM 1326 1075367 - 1075344 - g 90 -9.6 -4.53036 | opp_overlap 1075342 1075358, overlap 1075358 GTATAAAGATGAAAA CGGCGTGA ATGAACCG TCACGCCG ACGTTTACTGAAAGG TERM 1327 1075440 - 1075430 - g 82 -3.2 -5.28176 | overlap 1075436 CTCATGCACAAAAAA CGCA AAG TGCA CCGGGCACGCTTTCA ycdB 1075324 - 1076589 + | hypothetical protein TERM 1328 1077146 - 1077163 + T 72 -10.5 -2.80816 | opp_overlap 1077145 1077146 GTTCGTGCGCATAAT CGCGCTG CCAA CGGCGCG TGTGATGAATACAAA TERM 1329 1078000 - 1078024 + T 100 -13.6 -4.33907 | overlap 1078004 AGTGTATTATCGGTG CAGAGCCCGG GCGAA CCGGGCTTTG TTTTGGGTGTTTATG TERM 1330 1078004 - 1078020 + T 93 -10.8 -4.71418 | overlap 1078000 TATTATCGGTGCAGA GCCCGG GCGAA CCGGGC TTTGTTTTGGGTGTT ycdP 1078448 - 1078035 - | hypothetical protein ycdQ 1079775 - 1078450 - | N-glycosyltransferase PgaC insB 1081530 - 1081027 - | IS1 ORF2 TERM 1331 1083980 - 1084001 + H 83 -6.5 -5.06451 | opp_overlap 1083980 CCTTGTGATAAAAGA GCTCGGTCA TTAT TGACTGTGC TTTTTTCGGCTGATG SFV_1037 1086594 - 1086932 + | hypothetical protein SFV_1038 1087030 - 1088481 + | rtn-like protein SFV_1039 1089758 - 1088892 - | IS3 ORF2 TERM 1332 1089481 - 1089508 + g 75 -4.7 -4.74103 | overlap 1089456 1089456 GCCTTTGCCCTCAGT CCCTGACGGCG CAGGCT TGCCGCCACGG TTTTTACGTTAAAGG SFV_1040 1090054 - 1089755 - | IS3 ORF1 SFV_1041 1090157 - 1090537 + | hypothetical protein ycdU 1090646 - 1091632 + | hypothetical protein TERM 1333 1091811 - 1091792 - f 100 -7.8 -5.92337 | opp_overlap 1091790 1091792 ATATACGAAAAAAAA GCCCGTAC TTTC GTACGCGC TCTTCTTTAAATATG TERM 1334 1092126 - 1092108 - f 72 -8.9 -3.58184 | AGATCATAACGATAA GTGCGAA TAAAT TTCGCAC AACGCTTTTCGGGAG TERM 1335 1093432 - 1093449 + G 72 -5.5 -4.57073 | TGGATCTGATTATTG CCGGTTT TCAT GAGCCGG TTTTTGCGCCACATG ycdX 1093140 - 1093877 + | putative hydrolase ycdY 1093901 - 1094455 + | putative oxidoreductase component TERM 1336 1094994 - 1094976 - g 71 -2.2 -4.88407 | overlap 1094978 TTACGCAATGAAAAA CAGCGGCC TGT GGCTGGCG GCGCGTAGTGCAAAG ycdZ 1094509 - 1095048 + | hypothetical protein TERM 1337 1095065 - 1095039 - T 100 -9.5 -5.01811 | opp_overlap 1095043, overlap 1095043 GCAGGAAATCAAAAA TAAAGCGTGAG GGGCA CTCACGCTTTC GCTTAAACAGTAAAT TERM 1338 1095061 - 1095043 - T 100 -10.3 -5.00388 | opp_overlap 1095043, overlap 1095039 GAAATCAAAAATAAA GCGTGAG GGGCA CTCACGC TTTCGCTTAAACAGT TERM 1339 1095043 - 1095061 + T 83 -10.3 -3.75332 | opp_overlap 1095039 1095043 GAAATCAAAAATAAA GCGTGAG GGGCA CTCACGC TTTCGCTTAAACAGT TERM 1340 1095080 - 1095101 + T 91 -8.7 -5.03994 | opp_overlap 1095080 CGCTTAAACAGTAAA TGCCGGATT ATTA ATTCCGGCA TTTTTATCTGTCAGG TERM 1341 1095101 - 1095080 - T 74 -8.7 -4.00532 | opp_overlap 1095080 CGCTTAAACAGTAAA TGCCGGATT ATTA ATTCCGGCA TTTTTATCTGTCAGG TERM 1342 1095582 - 1095595 + T 73 -4.5 -4.77165 | opp_overlap 1095582, overlap 1095583 GGATTCGGTTATTAA TGGCA ACCG TGCCG TTTTCTTGTGCCGCA TERM 1343 1095780 - 1095737 - T 93 -11.8 -3.70902 | opp_overlap 1095741, overlap 1095741 TGTTGTATACCGAAA CAAAGATCTTACCCGTCGGC GCTG GCAGATGGGTCAAATCTTTG TAGCTCTGAGCACGA TERM 1344 1095776 - 1095741 - T 77 -6.8 -4.48299 | opp_overlap 1095741, overlap 1095737 GTATACCGAAACAAA GATCTTACCCGTCGGC GCTG GCAGATGGGTCAAATC TTTGTAGCTCTGAGC csgF 1096330 - 1095914 - | curli assembly protein CsgF csgE 1096744 - 1096355 - | curli assembly protein CsgE csgD 1097399 - 1096749 - | DNA-binding transcriptional regulator CsgD TERM 1345 1097142 - 1097163 + g 93 -8.9 -4.77036 | opp_overlap 1097145 TTCAGGCGTATTTAG CAACAATAT TTTG ATATTGTTG TTTTTCCTGCTCAAA TERM 1346 1097784 - 1097805 + H 82 -3 -5.52384 | AAACGTTTTTGTTTT TTCTCCAC ACCTCC GTGGACAA TTTTTTTACTGCAAA csgB 1098153 - 1098608 + | curlin minor subunit SFV_1054 1098822 - 1099124 + | IS600 ORF1 SFV_1055 1099265 - 1099903 + | IS600 ORF2 TERM 1347 1100272 - 1100287 + F 100 -10.4 -5.75342 | opp_overlap 1100272 TTTGTATTACAGAAA CAGGGC GCAA GCCCTG TTTTTTTTCGGGAGA TERM 1348 1100287 - 1100272 - f 87 -10.4 -4.08706 | opp_overlap 1100272 TTTGTATTACAGAAA CAGGGC GCAA GCCCTG TTTTTTTTCGGGAGA SFV_1056 1100761 - 1101072 + | hypothetical protein SFV_1057 1101167 - 1101700 + | hypothetical protein TERM 1349 1102343 - 1102366 + T 75 -9.7 -3.53811 | opp_overlap 1102346, overlap 1102331 1102346 ACCCGCCTCCTGGCA TAACGATGC CATGAC GCATCGTTA TTTACGCAAAATGGA TERM 1350 1103075 - 1103045 - T 100 -11.8 -5.03314 | opp_overlap 1103048, overlap 1103029 1103048 GTTATTCTCAAAAAA GAACCCGCCACCAG TTT CTGGAAGCGGGTTA TGGTCAGACTGGCGT TERM 1351 1103048 - 1103072 + T 79 -11.3 -3.41051 | opp_overlap 1103029 1103045 1103048 ATTCTCAAAAAAGAA CCCGCCACCAG TTT CTGGAAGCGGG TTATGGTCAGACTGG TERM 1352 1103072 - 1103048 - T 100 -13.5 -4.62085 | opp_overlap 1103048, overlap 1103029 1103045 ATTCTCAAAAAAGAA CCCGCCACCAG TTT CTGGAAGCGGG TTATGGTCAGACTGG mdoC 1104284 - 1103127 - | glucans biosynthesis protein TERM 1353 1103764 - 1103741 - G 100 -3.2 -5.64274 | gap 1, overlap 1103744 1103745 CGAGGCATAAAAAAA TCACCGATAGT TTT ACCATCGA-GA ATTTTTTATTCGTTT TERM 1354 1105122 - 1105112 - g 88 -5.4 -5.22289 | CAGCAAAGATAAAAA CGAT GAA ATCG TCAGCATGCTCGGGG mdoG 1104687 - 1106213 + | glucan biosynthesis protein G mdoH 1106206 - 1108749 + | glucosyltransferase MdoH TERM 1355 1108897 - 1108880 - T 73 -2 -5.11063 | gap 1, opp_overlap 1108882, overlap 1108869 1108882 1108883 ACGAGCCAATAAAAA TACCGGC GTTAT GCCG-TA ATGCCAGTCAGTTAA TERM 1356 1108898 - 1108927 + T 89 -9.3 -4.59109 | opp_overlap 1108882, overlap 1108882 1108900 CGGCGTTATGCCGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 1357 1108900 - 1108925 + T 100 -16.3 -3.90762 | opp_overlap 1108882, overlap 1108882 1108898 GCGTTATGCCGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_1062 1110238 - 1109165 - | IS91 orf TERM 1358 1109940 - 1109955 + g 73 -9 -3.63805 | GTCCCCGGCTCCACA TCTGCC TGAT GGCAGA TTTCCAGTATCACAT TERM 1359 1110265 - 1110286 + r 71 -7.2 -4.06419 | opp_overlap 1110262 CTGATTCAATTACCA CCGGACGG ACTGCC CCTTCCGG TTGTTTCTCCAGCCA SFV_1063 1110717 - 1110352 - | putative IS91 ORF2 TERM 1360 1110640 - 1110629 - G 85 -3 -5.40072 | TCTTCGTCAAAAAAA TCAT CCGG ATGA AGTTTCACGACATAG TERM 1361 1111070 - 1111081 + G 72 -4.4 -4.61231 | CTCTAGGCATTCAAG GTTC TGAA GAAC TTTTTAGAAATATGA TERM 1362 1112284 - 1112294 + G 72 -5.4 -4.50159 | GCAACTGTTAGACCG GATG CAC CATC TTTCTTTAGCTTCAA SFV_1064 1110742 - 1112376 + | hypothetical protein SFV_1065 1113127 - 1112480 - | IS629 ORF2 TERM 1363 1113047 - 1113059 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SFV_1066 1113689 - 1113363 - | IS629 ORF1 SFV_1067 1114121 - 1114423 + | IS911 ORF1 TERM 1364 1114882 - 1114871 - g 77 -5.8 -4.63218 | opp_overlap 1114876 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SFV_1068 1114724 - 1115290 + | IS911 ORF2 SFV_1069 1115863 - 1116228 + | insertion sequence 2 OrfA protein SFV_1070 1116186 - 1117091 + | insertion element IS2 transposase InsD SFV_1071 1117487 - 1117813 + | IS629 ORF1 TERM 1365 1118129 - 1118117 - gf 72 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SFV_1072 1118049 - 1118528 + | IS629 ORF2 SFV_1073 1118309 - 1118695 + | IS629 ORF2 SFV_1074 1118983 - 1119285 + | IS600 ORF1 SFV_1075 1119426 - 1120139 + | IS600 ORF2 SFV_1076 1121102 - 1120164 - | hypothetical protein htrB 1122472 - 1121489 - | lipid A biosynthesis lauroyl acyltransferase TERM 1366 1121877 - 1121887 + g 70 -5.4 -4.41348 | TTTAAATCTTTGCGG TCGA GCA TCGA TTTATTTGAGCGCAA TERM 1367 1122228 - 1122250 + g 72 -8.4 -3.73224 | CACAGTTCCAGGTTG CGATGCACAA TTT TTGCGCGTCG TTTCATAAAACGTAA TERM 1368 1122689 - 1122676 - g 70 -6.7 -4.10429 | overlap 1122684 AACGACGCGTTAAAA GCCAA AATG TTGGC TGAGAGCGAACCGCG TERM 1369 1123337 - 1123361 + G 70 -4.1 -4.63218 | opp_overlap 1123326 1123324 AATACGCCCGTAAGG CGCGCGAGCAG GGC TTGCCGGTGCG TTTTATTGGCAAAAA yceA 1122634 - 1123686 + | hypothetical protein TERM 1370 1123722 - 1123688 - T 72 -5.7 -4.46675 | opp_overlap 1123691 1123692, overlap 1123690 1123693 ATCCAACAGAATAAA TATCATTGCCGGATG CGTGC CATCCGGCAACATTT CACTCTTACTTCTGC TERM 1371 1123720 - 1123690 - T 72 -8.3 -3.83144 | opp_overlap 1123691 1123692, overlap 1123688 1123693 CCAACAGAATAAATA TCATTGCCGGATG CGTGC CATCCGGCAACAT TTCACTCTTACTTCT TERM 1372 1123692 - 1123718 + T 74 -10.9 -2.86618 | opp_overlap 1123690 1123688 1123693, overlap 1123691 AACAGAATAAATATC ATTGCCGGATG CGTGC CATCCGGCAAC ATTTCACTCTTACTT TERM 1373 1123717 - 1123693 - T 88 -14.4 -2.9735 | opp_overlap 1123692 1123691, overlap 1123690 1123688 ACAGAATAAATATCA TTGCCGGATG CGTGC CATCCGGCAA CATTTCACTCTTACT yceI 1124303 - 1123728 - | hypothetical protein TERM 1374 1124032 - 1124020 - G 70 -5.5 -4.42386 | GTGGTATTGAGAAAA TCCGC ACT GCGAA GATGTTTATCGCGTT SFV_1080 1124948 - 1124307 - | putative cytochrome TERM 1375 1124475 - 1124440 - G 77 -6 -4.66609 | gap 1, overlap 1124441 CACGCGAGCCAAAAA TGCAGG-GCACCGGCAA AGT CTGCCTGTGCGCCAGCG TCGGCAAGGGTCGCG yceO 1125274 - 1125134 - | hypothetical protein TERM 1376 1125206 - 1125196 - G 75 -5.4 -4.62163 | AGAGAAAAAGATAAA GCAT CAG ATGC TCGCGAATATTATTG TERM 1377 1125285 - 1125266 - G 95 -10.7 -4.57837 | opp_overlap 1125271 ATACTCCTGTAAAAA CGGCCTC ATTCTG GAGGCCG TAATGATGATTATTG solA 1126413 - 1125295 - | N-methyltryptophan oxidase TERM 1378 1126398 - 1126412 + g 100 -3.6 -5.76633 | CGCTGCCAATAATGA TGAGAT CGT ATTTCA TTTTTTTCTCTCTGC TERM 1379 1126487 - 1126503 + r 83 -9.4 -4.20084 | opp_overlap 1126481 1126487 CCCAGAAATGGTAAA GGCACC GGTGA GGTGCC TTTTGGGTGGATGGT TERM 1380 1126503 - 1126487 - R 76 -9.4 -3.74347 | opp_overlap 1126487, overlap 1126481 CCCAGAAATGGTAAA GGCACC GGTGA GGTGCC TTTTGGGTGGATGGT TERM 1381 1127050 - 1127035 - R 100 -6 -5.85244 | overlap 1127036 AAGTAAAATAAAAAA GCCGGG GCGA CCCGGT AAAAACAAAAATCAC TERM 1382 1127049 - 1127036 - R 83 -9.5 -4.07486 | overlap 1127035 AGTAAAATAAAAAAG CCGGG GCGA CCCGG TAAAAACAAAAATCA dinI 1127374 - 1127072 - | DNA damage-inducible protein I pyrC 1128437 - 1127391 - | dihydroorotase TERM 1383 1128536 - 1128521 - R 100 -11.8 -4.91852 | opp_overlap 1128518 TGCACGAAAAATAAA GGGCGC GAAT GCGCCC TCGTCATTAATCCGT yceB 1129160 - 1128543 - | hypothetical protein TERM 1384 1129234 - 1129188 - R 83 -4.3 -5.31275 | gap 1, overlap 1129195 1129197 CGCCAGCAGAAAAAA CTGA-AAACGGCGGCAACCCGC GAAT ACAGGCTGCCGCGGCGGGTCAG GATTAAATCGCCATT TERM 1385 1129226 - 1129195 - R 100 -12.2 -4.55016 | overlap 1129188 1129197 AGAAAAAACTGAAAA CGGCGGCAACCCGC GAAT ACAGGCTGCCGCGG CGGGTCAGGATTAAA TERM 1386 1129224 - 1129197 - R 80 -13.4 -2.56715 | overlap 1129195 1129188 AAAAAACTGAAAACG GCGGCAACCCGC GAAT ACAGGCTGCCGC GGCGGGTCAGGATTA grxB 1129884 - 1129237 - | glutaredoxin 2 TERM 1387 1129973 - 1129983 + r 74 -8.2 -3.92373 | opp_overlap 1129970 1129973, overlap 1129952 CGTTCCAGCAAACGA CGCG CGG CGCG TTTCTGACTAAACTG yceL 1131156 - 1129948 - | multidrug resistance protein MdtH TERM 1388 1130658 - 1130643 - G 74 -2.4 -5.03227 | overlap 1130644 ATAGCACAAACAAAA CGGGCC CTGT GGCGCA GACCAGGCGAAAGTC TERM 1389 1130772 - 1130753 - G 87 -4.9 -5.30686 | opp_overlap 1130753 AACAGCGAGAAAAAA CGACCAC GTTGTT GTGGACG GATTAGTTTCACCAC TERM 1390 1131239 - 1131269 + H 71 -3.4 -4.8667 | overlap 1131240 1131258 CTTCGGGGACAATAT TTTTTTATCAAAAC GTC GCTTTGATAGAGAG TTTTTATCAAATATG TERM 1391 1131657 - 1131669 + G 84 -7.7 -4.67556 | opp_overlap 1131657 ACGAAAAAGAGATTA TTGGC GTT GCCAA TTTTTCCAATGTTGT rimJ 1131392 - 1131976 + | ribosomal-protein-S5-alanine N-acetyltransferase yceH 1131987 - 1132634 + | hypothetical protein mviM 1132636 - 1133502 + | putative virulence factor TERM 1392 1133622 - 1133638 + F 100 -13.7 -4.11692 | ATTCGCCTCTTTCAG CGCCTGC CTT GCAGGCG TTTTGCCCGTGGGTC mviN 1133669 - 1135204 + | putative virulence factor TERM 1393 1135240 - 1135209 - T 72 -10.2 -2.77344 | gap 1, opp_overlap 1135208 1135211, overlap 1135208 1135212 GGACGGTGTAACAAT GCAT-TCCGGCCTGC AGT GCAGGCCGGAGATAA TATTCAGATCGAAAT TERM 1394 1135211 - 1135237 + T 86 -14.4 -2.75074 | opp_overlap 1135208 1135209 1135212, overlap 1135208 ACGGTGTAACAATGC ATTCCGGCCTGC AGT GCAGGCCGGAGA TAATATTCAGATCGA TERM 1395 1135236 - 1135212 - T 90 -15.7 -2.6563 | opp_overlap 1135211 1135208, overlap 1135208 1135209 CGGTGTAACAATGCA TTCCGGCCTGC AGT GCAGGCCGGAG ATAATATTCAGATCG flgN 1135660 - 1135244 - | flagella synthesis protein FlgN flgM 1135958 - 1135665 - | anti-sigma28 factor FlgM TERM 1396 1135702 - 1135729 + g 73 -4 -4.86621 | overlap 1135703 1135706 TGCGCTTCGTTGATC AGCGCATCGGCA ATTT TGCCGGTGTCCA TTTTTAGTTCACCGT flgA 1136693 - 1136034 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 1397 1136907 - 1136889 - g 72 -10.2 -3.38991 | overlap 1136887 ACGTTTTCAACAAGA GGCGCTCA ATC TGCGCGCC CAGCGTCAGGAAGTG flgB 1136848 - 1137264 + | flagellar basal body rod protein FlgB TERM 1398 1137294 - 1137306 + F 73 -10.5 -3.05816 | GAATATTTTTGATAT CGCCG GGT CGGCG TTAACTGCCCAGTCC TERM 1399 1137507 - 1137492 - f 71 -7.6 -3.86015 | opp_overlap 1137483 CAGGCCCCGGACAAA CTGGTT TATG AACCAG GTAATCCGCTGGCAG TERM 1400 1138130 - 1138111 - g 86 -7.1 -4.88736 | opp_overlap 1138111 CATCACCGATAAAAA TGGCGCG GTTGTG CGCACCA TTGATATTGGTGAAC flgD 1137683 - 1138378 + | flagellar basal body rod modification protein TERM 1401 1139337 - 1139325 - g 70 -5.5 -4.32951 | opp_overlap 1139329 1139330, overlap 1139330 ATTCCAACGAACAAA CCCAA CTG CTGGG GCAGATTGTACTGGC flgE 1138403 - 1139611 + | flagellar hook protein FlgE TERM 1402 1139699 - 1139687 - g 74 -10.5 -3.24329 | opp_overlap 1139685, overlap 1139685 GACGCTGAATCAACA GGCGG TAA CCGCC AGTAATCTGGCCAAT flgF 1139631 - 1140386 + | flagellar basal body rod protein FlgF flgG 1140524 - 1141306 + | flagellar basal body rod protein FlgG TERM 1403 1141314 - 1141332 + F 74 -8.1 -3.96337 | opp_overlap 1141314 AACTCTAAGGCATAA CCGGTGG CAGGT TCACCGG TTTACTGATTTTTGA flgH 1141350 - 1142057 + | flagellar basal body L-ring protein flgI 1142069 - 1143166 + | flagellar basal body P-ring protein flgJ 1143166 - 1144107 + | peptidoglycan hydrolase TERM 1404 1144566 - 1144550 - f 75 -11.5 -3.06737 | opp_overlap 1144559, overlap 1144541 GAGTAACGCGGAAGA CCCGGCG GCG CGCCAGG CGCTGATTGGGAAAT flgL 1145827 - 1146780 + | flagellar hook-associated protein FlgL TERM 1405 1146822 - 1146850 + T 100 -16 -5.54264 | overlap 1146847 TGGGTATGTTTTGTC TGCCCGCTCTGG GATCG CCGGGGCGGGCA TTTTTTTGCCTATTT TERM 1406 1146954 - 1146935 - T 100 -11.4 -5.69793 | opp_overlap 1146935 1146931 1146927 ACATGAAATAAAAAA GCCCTGGC AGTT ACCAGGGC TTGATTACTTTGAGC TERM 1407 1146935 - 1146954 + T 79 -10.7 -3.5013 | opp_overlap 1146935, overlap 1146931 1146927 ACATGAAATAAAAAA GCCCTGG CAGTTA CCAGGGC TTGATTACTTTGAGC rne 1150161 - 1146976 - | ribonuclease E TERM 1408 1148556 - 1148583 + g 73 -9.2 -3.61894 | gap 1 GCGCTGGCGGCACAT CCGGCA-TGGCAA AGG TTGCCAGTGCAGG TTGTTCAGGACGCTT TERM 1409 1149559 - 1149573 + g 83 -5.6 -5.15634 | CAGGAACGGAGCCGG GCGGCT TTC AGCGGC TTTTTTGATGGCCTC yceC 1150734 - 1151693 + | 23S rRNA pseudouridylate synthase C TERM 1410 1151764 - 1151717 - T 76 -11.8 -2.60219 | opp_overlap 1151725 1151726, overlap 1151716 1151735 1151736 TATAAGCCTGATAAT GGGCGGTTGGCCTGATAAGGCG TTTA CGCCGCATCAGGCCGCCTGCAC CGATTGCCGGATGCG TERM 1411 1151790 - 1151735 - T 74 -10.3 -3.28712 | opp_overlap 1151726 1151725, overlap 1151717 1151716 1151736 CGGTTGGCCTGATAA GGCGTTTACGCCGCATCAGGCCGCC TGCACC GATTGCCGGATGCGACGTAACCGCA TCCGGCGCAAACAAC TERM 1412 1151789 - 1151736 - T 83 -13.8 -2.57132 | opp_overlap 1151726 1151725, overlap 1151717 1151716 1151735 GGTTGGCCTGATAAG GCGTTTACGCCGCATCAGGCCGCC TGCACC GATTGCCGGATGCGACGTAACCGC ATCCGGCGCAAACAA yceF 1152428 - 1151805 - | Maf-like protein TERM 1413 1152501 - 1152490 - H 71 -3.6 -4.78077 | overlap 1152491 1152494 CTGAACGAAAATAAA GCAG TAAC CCGC AATGTGTGCGAATTA TERM 1414 1152520 - 1152548 + H 83 -10.3 -3.74077 | opp_overlap 1152526, overlap 1152526 GTGTGCGAATTATTG GCAAAAGGCAACC ACA GGCTGCCTTTTTC TTTGACTCTATGACG TERM 1415 1152526 - 1152542 + H 95 -7.9 -5.31519 | opp_overlap 1152526, overlap 1152520 GAATTATTGGCAAAA GGCAACC ACA GGCTGCC TTTTTCTTTGACTCT TERM 1416 1152542 - 1152526 - H 83 -10.1 -4.12902 | opp_overlap 1152526 1152520 GAATTATTGGCAAAA GGCAACC ACA GGCTGCC TTTTTCTTTGACTCT yceD 1152588 - 1153109 + | hypothetical protein TERM 1417 1153350 - 1153335 - f 70 -9 -3.34895 | opp_overlap 1153321 GTCATCGCTAAGTAA TCACGC GTCT GCGTGA TGAAGCTTAGTGAGG TERM 1418 1153471 - 1153500 + G 78 -10.7 -3.51032 | overlap 1153472 1153475 TTTTGGCCCTTCCGT GACAGTGCCTGCA GCAT TGCAGGCACTGAA TTCTAATTCGCAACT TERM 1419 1153472 - 1153499 + G 85 -14.2 -2.70298 | overlap 1153471 1153475 TTTGGCCCTTCCGTG ACAGTGCCTGCA GCAT TGCAGGCACTGA ATTCTAATTCGCAAC TERM 1420 1153475 - 1153496 + G 90 -14.5 -2.63347 | overlap 1153472 1153471 GGCCCTTCCGTGACA GTGCCTGCA GCAT TGCAGGCAC TGAATTCTAATTCGC plsX 1153469 - 1154485 + | putative glycerol-3-phosphate acyltransferase PlsX fabH 1154553 - 1155506 + | 3-oxoacyl-(acyl carrier protein) synthase III fabD 1155522 - 1156451 + | acyl carrier protein S-malonyltransferase TERM 1421 1156503 - 1156483 - g 90 -7.5 -4.86621 | overlap 1156485 ATTTTGAAGGAAAAA TCGCACTGG TAA CCGGTGCAA GCCGCGGAATTGGCC fabG 1156464 - 1157198 + | 3-ketoacyl-(acyl-carrier-protein) reductase acpP 1157409 - 1157645 + | acyl carrier protein TERM 1422 1157648 - 1157686 + F 80 -6.7 -4.84359 | gap 1, opp_overlap 1157596 1157651 1157653, overlap 1157654 1157657 CCACCAGGCGTAAGT GAACATCTCCAGGCGGTC GTTC GACCGCCTG-AGTTTATC TTTTTGTCCCACTAG TERM 1423 1157681 - 1157653 - f 71 -9.6 -3.15056 | gap 1, opp_overlap 1157648 1157654 1157657, overlap 1157651 AGGCGTAAGTGAACA TCTCCAGGCGGTC GTTC GACCGCCTG-AGT TTATCTTTTTGTCCC TERM 1424 1157654 - 1157680 + F 100 -13.1 -4.60808 | gap 1, opp_overlap 1157653 1157651, overlap 1157648 1157657 GGCGTAAGTGAACAT CTCCAGGCGGTC GTTC GACCGCCTG-AG TTTATCTTTTTGTCC TERM 1425 1157657 - 1157678 + F 90 -15.9 -2.59288 | opp_overlap 1157653 1157651, overlap 1157654 1157648 GTAAGTGAACATCTC CAGGCGGTC GTTC GACCGCCTG AGTTTATCTTTTTGT TERM 1426 1158104 - 1158084 - g 70 -3.9 -4.68384 | overlap 1158089 ACTGATCGAAGAAAA CCACACATC TCT GATGAACGG TGGTCCACGTAAGAT TERM 1427 1158400 - 1158375 - g 74 -10.3 -3.51329 | TACCCGCAATGATAA CCCGCAAGCGG CGAG CCGCCCGTGGG ATAAAGAGCGTGATG fabF 1157767 - 1158972 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 1428 1159013 - 1158998 - f 72 -6 -4.55287 | opp_overlap 1158998 TCCACCCATATAAAA GGTCCG CTTG CGGGCC TTTTTTCTTAGCTTT TERM 1429 1158998 - 1159013 + F 100 -8.2 -5.52096 | opp_overlap 1158998 TCCACCCATATAAAA GGTCCG CTTG CGGGCC TTTTTTCTTAGCTTT pabC 1159092 - 1159901 + | 4-amino-4-deoxychorismate lyase yceG 1159904 - 1160926 + | hypothetical protein TERM 1430 1161375 - 1161360 - g 91 -11.8 -4.08692 | GAAGTTGGCTTAAAA CGCGCG CGTG CGCGCG GCGAGCTGGATCGTA tdk 1160916 - 1161557 + | thymidylate kinase TERM 1431 1161603 - 1161593 - g 81 -6.8 -4.59773 | CCTGATTTCGAAAAA CTGG TAG CCAG CTATCAGGCCGGAAG TERM 1432 1161959 - 1161973 + G 71 -2.8 -4.7497 | opp_overlap 1161969 ACGCTTGAAGAGCCA CCAG CAGAAAC CTGG TTTTTCCTGGCTACC TERM 1433 1162135 - 1162162 + G 72 -7.7 -3.90922 | gap 1 CGCATTGCGCTTAAG CGCCGGT-TCGC CTGGC GCGGCACTGGCG TTGTTTCAGGGAGAT TERM 1434 1162337 - 1162325 - g 81 -9.1 -4.09864 | ATGGATGCGCTAAAA CGCCA TCA TGGCG CTGCGCAGGTGACCA holB 1161554 - 1162558 + | DNA polymerase III subunit delta' ycfH 1162569 - 1163366 + | putative metallodependent hydrolase TERM 1435 1163438 - 1163411 - f 74 -8.4 -3.93057 | opp_overlap 1163429 1163430, overlap 1163412 GCTAAAACGAGTAAA GTTCACCGCCGA AAAT TGGGCGGTGAAT AACCGCGTTTGAAAT TERM 1436 1163437 - 1163412 - f 78 -11.9 -2.95111 | opp_overlap 1163429 1163430, overlap 1163411 CTAAAACGAGTAAAG TTCACCGCCGA AAAT TGGGCGGTGAA TAACCGCGTTTGAAA TERM 1437 1164505 - 1164488 - g 70 -4 -4.61566 | opp_overlap 1164486 1164488 TGCTAAACCAGAAAA CCGCGC GAAAGT GGGCGG TATTATGATCTCCGC ptsG 1163661 - 1165094 + | glucose-specific PTS system IIBC components TERM 1438 1165136 - 1165119 - T 81 -12.7 -3.25823 | opp_overlap 1165119 CGTTGGGGAGACTAA GGCAGCC AGAT GGCTGCC TTTTTTACAGGTGTT TERM 1439 1165119 - 1165136 + T 100 -12.7 -5.04987 | opp_overlap 1165119 CGTTGGGGAGACTAA GGCAGCC AGAT GGCTGCC TTTTTTACAGGTGTT fhuE 1167343 - 1165154 - | ferric-rhodotorulic acid outer membrane transporter TERM 1440 1165849 - 1165874 + g 79 -4.7 -4.88736 | gap 1, opp_overlap 1165847 1165849 CATTGATGTCAAACA CCAGACCAGCGT AAG GCG-TGGTGTGG TTTTTCTCCATGCTG TERM 1441 1167906 - 1167896 - g 75 -5.4 -4.59773 | CCGTAGCGGCAAAAA TTGC TGA GCAA GAAGGTATTGCCGAA ycfF 1167682 - 1168041 + | purine nucleoside phosphoramidase ycfL 1168044 - 1168421 + | hypothetical protein ycfM 1168436 - 1169017 + | hypothetical protein TERM 1442 1169086 - 1169107 + G 91 -9.4 -4.58685 | CAATAATCCCATCAC GCGCGACG AATTGC TGTCGCGC TTTTTCCCGCAGTTT thiK 1169057 - 1169881 + | thiamine kinase TERM 1443 1170786 - 1170796 + G 70 -6.8 -4.08706 | opp_overlap 1170786 CCGATCAAGGCAGAA CGTG TTA CACG TTTGTATCATAAAGG ycfO 1169904 - 1170917 + | beta-hexosaminidase ycfP 1170940 - 1171482 + | hypothetical protein ndh 1171914 - 1173194 + | respiratory NADH dehydrogenase TERM 1444 1173261 - 1173293 + F 76 -12 -2.60723 | opp_overlap 1173270, overlap 1173260 TGGTACGAGCGGTAG GCCTGATAAGACGC GTTAA GCGTCGCATCAGGC ATTCCTTCAGACTCC ycfJ 1173433 - 1173960 + | hypothetical protein TERM 1445 1173982 - 1174010 + T 100 -12.4 -5.06103 | TGTACTCTGCAATTT GGCCCCTCATTC GCTCA GGCTGAGGGGCC TTTTTTGCGACTTAT ycfQ 1174717 - 1174022 - | hypothetical protein TERM 1446 1174610 - 1174620 + g 100 -2.4 -5.77853 | GTCGAACACTTTTGG GCGG CCA CGGC TTTTTTTTACACATT TERM 1447 1174924 - 1174911 - H 70 -2.3 -4.92239 | opp_overlap 1174916 TGAAAAACGTAAAAA CCTCA TCGC TGCGG CGATTTTAAGCTCCA ycfR 1174939 - 1175151 + | hypothetical protein TERM 1448 1175190 - 1175216 + T 100 -18.8 -5.93809 | CTACTGCTGATTTTT TCCCCGCGACAT GCC GTGTCGCGGGGA TTTTTTTTATCCAGG ycfS 1176199 - 1175234 - | hypothetical protein TERM 1449 1176310 - 1176331 + r 72 -10.8 -2.84878 | overlap 1176309 TGTAAATGTTGCAGA TGGGGGCG CAGAAA CGCCCCCG ATTTACATTAAGCGA mfd 1179848 - 1176339 - | transcription-repair coupling factor TERM 1450 1177301 - 1177313 + g 70 -6.9 -4.01564 | GCACCAGTTCTGCCA GCCGT TCG GCGGC TTTCTGAATGTTTTC TERM 1451 1178556 - 1178566 + g 72 -5.4 -4.45544 | opp_overlap 1178543 AAGACGCATAATGCG TTGC GGA GCAA TTTTAATTCGTGCGA TERM 1452 1178666 - 1178681 + g 77 -3.2 -5.07486 | opp_overlap 1178662, overlap 1178662 CGAGGAACTTACGCA GCGC ATCCAGCG GCGC TTTTTGTTGCGCCTG ycfT 1180986 - 1179913 - | hypothetical protein TERM 1453 1180331 - 1180316 - G 81 -9 -4.08651 | opp_overlap 1180330, overlap 1180328 ACGGTAAGCAAAGAA GCCATC AGCA GATGGC GGCGCAACGGCACCT TERM 1454 1181978 - 1181965 - g 90 -8.1 -4.77157 | overlap 1181958 TTAAGTCAGCAAAAA CTGCC TGAA GGCAG CAAATGGCAGGACTG ycfU 1181197 - 1182447 + | outer membrane-specific lipoprotein transporter subunit LolC lolD 1182455 - 1183141 + | lipoprotein transporter ATP-binding subunit ycfW 1183141 - 1184385 + | outer membrane-specific lipoprotein transporter subunit LolE ycfX 1184414 - 1185325 + | N-acetyl-D-glucosamine kinase TERM 1455 1185405 - 1185389 - g 75 -4.4 -4.85782 | gap 1, opp_overlap 1185389 1185392 1185395, overlap 1185391 TTTCGTAAAAATAAA CG-TCGC CTGC GCGAGCG TTTGCGTCAGCGTAT TERM 1456 1185408 - 1185419 + G 82 -2.2 -5.41143 | overlap 1185395 1185392 GCCTGCGCGAGCGTT TGCG TCAG CGTA TTTTTTTCAGAGATA cobB 1185341 - 1186162 + | NAD-dependent deacetylase TERM 1457 1186286 - 1186309 + T 71 -9.5 -3.22091 | opp_overlap 1186287, overlap 1186287 CTTGCTAACTAAAAA ACGGGCGGT AATACC ACCGCCCGC TTGCTGAATTAACGT TERM 1458 1186308 - 1186287 - T 100 -13.7 -5.26875 | opp_overlap 1186286 1186287 TTGCTAACTAAAAAA CGGGCGGTA ATAC CACCGCCCG CTTGCTGAATTAACG TERM 1459 1186287 - 1186308 + T 80 -13 -2.52933 | opp_overlap 1186287, overlap 1186286 TTGCTAACTAAAAAA CGGGCGGT AATACC ACCGCCCG CTTGCTGAATTAACG potD 1187364 - 1186318 - | spermidine/putrescine ABC transporter periplasmic substrate-binding protein potC 1188155 - 1187361 - | spermidine/putrescine ABC transporter membrane protein potB 1189009 - 1188152 - | spermidine/putrescine ABC transporter membrane protein potA 1190129 - 1188993 - | putrescine/spermidine ABC transporter ATPase protein TERM 1460 1191040 - 1191028 - g 77 -2.7 -5.0916 | opp_overlap 1191028 CGGTCAATATAAAAA TTGTC GGT AACAA TGTTCATCCGGGCAC pepT 1190379 - 1191605 + | peptidase T TERM 1461 1191639 - 1191613 - T 83 -9.4 -4.32201 | opp_overlap 1191613, overlap 1191614 GGAAGTAAGCGAAAA GGGATGCGGCAT GTG ATGCTGCATCCG GCTTAAATCCAAACT TERM 1462 1191638 - 1191614 - T 83 -12.9 -3.18598 | opp_overlap 1191613, overlap 1191613 GAAGTAAGCGAAAAG GGATGCGGCAT GTG ATGCTGCATCC GGCTTAAATCCAAAC ycfD 1192784 - 1191654 - | hypothetical protein SFV_1147 1193003 - 1194253 + | putative integrase of prophage TERM 1463 1194241 - 1194264 + F 75 -2.6 -5.1287 | gap 1, overlap 1194243 CACGCTACCAGTAGC CA-GAAGAAAA TAA TTTTTTTCGTG TTTTTTCAGTATGCG TERM 1464 1194443 - 1194465 + F 90 -10.7 -4.20368 | opp_overlap 1194443 AATAGCGAGAAAAAA GGCATGAAA CAATA TTTCATGCC TTTGTATTAACGTGA TERM 1465 1194465 - 1194443 - f 100 -11.4 -5.30686 | opp_overlap 1194443 AATAGCGAGAAAAAA GGCATGAAAC AAT ATTTCATGCC TTTGTATTAACGTGA TERM 1466 1194990 - 1194970 - g 100 -11.8 -5.64274 | opp_overlap 1194970 1194969 TCAGGCATAAAAAAA GCGGCCCC GAAAT GGAGCCGC CTTTCTGAACAGATA TERM 1467 1195311 - 1195283 - g 71 -9.5 -3.51232 | opp_overlap 1195282, overlap 1195284 GCGCCTGTAAAGCAA TGCGCCGTAGTAC CTC ACACCACGGCGCT GATAGTTTTTATCCT TERM 1468 1195310 - 1195284 - g 81 -13 -2.70525 | opp_overlap 1195282, overlap 1195283 CGCCTGTAAAGCAAT GCGCCGTAGTAC CTC ACACCACGGCGC TGATAGTTTTTATCC TERM 1469 1195602 - 1195564 - g 74 -2.4 -5.1485 | gap 1, opp_overlap 1195569, overlap 1195569 CAATCAACACAAAAA GCAAAGCCCCG-CACTG TAGGAG CAGTAACGGGGCTTCTA ACCAACAACGTAAAC TERM 1470 1195597 - 1195569 - g 81 -8.9 -4.41882 | gap 1, opp_overlap 1195569, overlap 1195564 AACACAAAAAGCAAA GCCCCG-CACTG TAGGAG CAGTAACGGGGC TTCTAACCAACAACG SFV_1148 1194874 - 1195620 + | hypothetical protein SFV_1149 1196494 - 1196793 + | hypothetical protein TERM 1471 1196827 - 1196817 - g 88 -2.4 -5.53288 | CCGAACGTAAAAAAA CAGC CAC GCGG AATAAAACACAAAGA TERM 1472 1197521 - 1197505 - g 74 -7.9 -4.13767 | CGCTTGACCTGAAAA CGGGGGA ATT TTCCCCG CACACGCCGGAGAAC TERM 1473 1197942 - 1197922 - g 70 -3.9 -4.71426 | overlap 1197923 CGGGCATCAAGAAAA TCACGGG CGGTGAC CCCGTGG AAATTAACCCGAAAT SFV_1150 1196790 - 1198538 + | bacteriophage P4 DNA primase TERM 1474 1198517 - 1198529 + F 77 -3.3 -5.14894 | opp_overlap 1198517 CGCAATAACAACAGA CGAGT GCG ACGCG TTTTTATAATTTTTT SFV_1151 1199102 - 1199407 + | hypothetical protein SFV_1152 1199417 - 1199578 + | hypothetical protein TERM 1475 1199602 - 1199617 + F 100 -10.4 -5.49729 | GAACCACACCACGCA GCCGGA GCAA TCCGGC TTTTTTTGCGTCATT SFV_1153 1199642 - 1199944 + | hypothetical protein TERM 1476 1199980 - 1199965 - T 73 -10.4 -3.04983 | opp_overlap 1199965 CATACAGCACATACA GCCGGA GCAA TCCGGC TTTTTGTTATTTTTT TERM 1477 1199965 - 1199980 + T 100 -10.4 -5.54403 | opp_overlap 1199965 CATACAGCACATACA GCCGGA GCAA TCCGGC TTTTTGTTATTTTTT TERM 1478 1200083 - 1200106 + T 72 -8.8 -3.57615 | TGATTATTCTCGCCC GTGGTGCCAG GACG CTGGGGCCAC TTTCCCGCCTGTTAA TERM 1479 1200208 - 1200237 + T 100 -7.9 -5.60993 | TTGAGTGTTTGCCGC GTCCTGGAGTT CCTTACTT AACCCCAGGAC TTTTTTTATGCAGAG insB 1200775 - 1200272 - | IS1 ORF2 SFV_1155 1200850 - 1201065 + | putative IS1 encoded protein TERM 1480 1201846 - 1201829 - f 77 -3.3 -5.1101 | overlap 1201831 GCATTACGTAAAAAA TACCGCA AAAA CGCGGTC TGAGTGGTTAACTCC TERM 1481 1202185 - 1202214 + F 86 -9.3 -4.42386 | opp_overlap 1202192, overlap 1202192 CGACGATTAACAGCA TACAGAAGGGGCT AAAA AGCCCCTTTAGTG TTTTATGGGTGAAAA TERM 1482 1202192 - 1202207 + F 87 -10.4 -4.10958 | opp_overlap 1202192, overlap 1202185 TAACAGCATACAGAA GGGGCT AAAA AGCCCC TTTAGTGTTTTATGG TERM 1483 1202207 - 1202192 - f 79 -10.4 -3.64431 | opp_overlap 1202192 1202185 TAACAGCATACAGAA GGGGCT AAAA AGCCCC TTTAGTGTTTTATGG SFV_1157 1202234 - 1202791 + | putative head maturation protease of prophage CP-933C TERM 1484 1203541 - 1203523 - g 72 -4.4 -4.60924 | overlap 1203524 1203525 GAAACGCCGGAAAAA CGCCCATC CTT GAAGGGGG GATGAGCTATCAGCA SFV_1158 1202793 - 1204004 + | putative head portal protein SFV_1159 1204336 - 1204632 + | hypothetical protein TERM 1485 1205112 - 1205085 - f 72 -4.8 -4.64676 | opp_overlap 1205073, overlap 1205073 TGAGCGGGAACAAAA CCGCCTTATCCG TGGA CTTATAAGGCAG CGTGACGCATGGAAG TERM 1486 1205166 - 1205155 - f 72 -5.8 -4.40003 | GGGCATAAAGATAAA GCGT CAGG ACGC GCAGAACGCATCACA SFV_1160 1205309 - 1205620 + | hypothetical protein SFV_1161 1205604 - 1207265 + | putative terminase of prophage CP-933C SFV_1162 1207279 - 1207560 + | hypothetical protein TERM 1487 1207594 - 1207581 - T 76 -8.1 -4.12738 | TGAGATTAAAGCAAA GCGCA AAAT TGCGC TGGCTACATCCCTCA TERM 1488 1207864 - 1207850 - T 73 -4.2 -4.84761 | opp_overlap 1207852 1207861, overlap 1207852 ACACCGTGACAAAAA GACGGT TTA ACCGTT CATTAAAAATCGACG TERM 1489 1207862 - 1207852 - T 71 -6.8 -4.04397 | opp_overlap 1207852 1207861, overlap 1207850 ACCGTGACAAAAAGA CGGT TTA ACCG TTCATTAAAAATCGA SFV_1163 1208043 - 1207867 - | hypothetical protein TERM 1490 1207899 - 1207915 + g 86 -6.6 -5.00616 | TTTGTGCTTTCCGGA TGACGT GGCCA ACGTCA TTTTTTAGCGAAAAA phoQ 1209817 - 1208357 - | sensor protein PhoQ TERM 1491 1208966 - 1208976 + g 77 -8.2 -4.13014 | CGTACTTTGCAGCAC CGCC AGT GGCG TTTTCAGACTATGGG TERM 1492 1209000 - 1209039 + g 72 -4.3 -4.60041 | gap 1 CTATGGGTCAGGTCG GTGAGCGTCGTACGGTAT TTGTC GTAACGTTCG-CGTTCAC TTTTTAACAATCGGT phoP 1210488 - 1209817 - | DNA-binding transcriptional regulator PhoP TERM 1493 1210648 - 1210617 - R 76 -9.4 -3.6968 | gap 1, opp_overlap 1210617 1210618 1210620, overlap 1210618 1210620 GGATAATCTTAATAA GCAG-GCCGGACAGC ATC GCCATCCGGCACTGA TTTGAGGCTTATTTC TERM 1494 1210647 - 1210618 - R 82 -12.9 -2.81326 | gap 1, opp_overlap 1210617 1210618 1210620, overlap 1210617 1210620 GATAATCTTAATAAG CAG-GCCGGACAGC ATC GCCATCCGGCACTG ATTTGAGGCTTATTT TERM 1495 1210644 - 1210620 - R 70 -9.9 -2.94759 | opp_overlap 1210620 1210618 1210617, overlap 1210618 1210617 TAATCTTAATAAGCA GGCCGGACAGC ATC GCCATCCGGCA CTGATTTGAGGCTTA purB 1212027 - 1210657 - | adenylosuccinate lyase ycfC 1212672 - 1212031 - | hypothetical protein TERM 1496 1212532 - 1212513 - G 75 -5.7 -4.59773 | gap 1, opp_overlap 1212514, overlap 1212514 CGCTACCGCCAAAAA CCGCCAGC GTCGA GCTGG-GG TTCATATCAATAATA trmU 1213814 - 1212708 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1497 1213724 - 1213710 - G 72 -7.8 -3.86346 | opp_overlap 1213712 CCAGTTCTTCATAAA CAGGCC TTC GACCTG ATATCCCTGTTGTTG SFV_1169 1214329 - 1213868 - | putative phosphohydrolase ymfC 1214992 - 1214339 - | 23S rRNA pseudouridine synthase E TERM 1498 1214940 - 1214952 + g 77 -2.7 -5.11613 | overlap 1214941 CGCTTAACCTGGTGA TTTCT AAA AGAAG TTTTTTGCATGGTAT icdA 1215164 - 1216414 + | isocitrate dehydrogenase TERM 1499 1216437 - 1216461 + T 100 -10 -5.05113 | opp_overlap 1216440, overlap 1216440 ATGTGTTAAATATTT AAACGGGCGT ATAAC ACGCCCGTTG TTTTATTTATGTGGA TERM 1500 1216440 - 1216458 + T 100 -11.7 -4.60302 | opp_overlap 1216440, overlap 1216437 TGTTAAATATTTAAA CGGGCGT ATAAC ACGCCCG TTGTTTTATTTATGT TERM 1501 1216458 - 1216440 - T 93 -12.4 -3.81137 | opp_overlap 1216440 1216437 TGTTAAATATTTAAA CGGGCGTA TAA CACGCCCG TTGTTTTATTTATGT insB 1217024 - 1216521 - | IS1 ORF2 SFV_1173 1217099 - 1217332 + | putative IS1 encoded protein TERM 1502 1218004 - 1217980 - g 70 -5.7 -4.34912 | AAGTAATGAAAATAA TGCCATAGCAA AAC TGGATATGGCA AAAGGGGAGATCACA TERM 1503 1218432 - 1218446 + G 76 -4.2 -4.88736 | CGGATAGTGAGGTAT CATCGG CTG CAGATG TTTTTATCAATAATA SFV_1174 1217756 - 1220029 + | hypothetical protein TERM 1504 1220072 - 1220050 - T 100 -12 -5.08824 | CCGTTAGCTAAAAAA CCGCGTCG TATTCAT CGACGCGG TACATATGAAATATT SFV_1175 1220415 - 1220086 - | hypothetical protein SFV_1176 1220769 - 1220425 - | hypothetical protein SFV_1177 1221279 - 1221689 + | hypothetical protein TERM 1505 1221705 - 1221720 + T 93 -10.4 -4.54727 | opp_overlap 1221705 CCATCAACGATTAAA CTGCGC TTCG GCGCAG TTTTCGTTTACAGGA TERM 1506 1221720 - 1221705 - T 84 -10.4 -3.85704 | opp_overlap 1221705 CCATCAACGATTAAA CTGCGC TTCG GCGCAG TTTTCGTTTACAGGA TERM 1507 1221786 - 1221767 - T 90 -7 -5.40072 | overlap 1221768 TCTGGGGCAAAAAAA GCCCGCCA GTTA CGGCGGGA AACCTCATCCTATGG TERM 1508 1221785 - 1221768 - T 83 -10.5 -3.83561 | overlap 1221767 CTGGGGCAAAAAAAG CCCGCCA GTTA CGGCGGG AAACCTCATCCTATG TERM 1509 1222036 - 1222009 - T 100 -11.4 -4.76041 | overlap 1222010 GAGAGGGATGAAAAA CTCAAGGCAGAA ATGA CTCTGCCTTGAA GATAAATGCGTTTTT TERM 1510 1222035 - 1222010 - T 85 -12.7 -3.44902 | overlap 1222009 AGAGGGATGAAAAAC TCAAGGCAGAA ATGA CTCTGCCTTGA AGATAAATGCGTTTT minE 1222327 - 1222061 - | cell division topological specificity factor MinE minD 1223143 - 1222331 - | cell division inhibitor MinD minC 1223862 - 1223167 - | septum formation inhibitor SFV_1181 1225507 - 1224602 - | insertion element IS2 transposase InsD SFV_1182 1225830 - 1225465 - | insertion sequence 2 OrfA protein TERM 1511 1226160 - 1226191 + r 73 -10.2 -3.01914 | gap 1, overlap 1226159 1226154 1226168 GAGTGGGGCGTTAAC GTCTA-TGACGGGGA TAG TCCCCGTCGGTTGAC ATTTACTTAATTTGA TERM 1512 1226168 - 1226182 + r 73 -11.4 -2.56046 | overlap 1226160 1226159 1226154 CGTTAACGTCTATGA CGGGGA TAG TCCCCG TCGGTTGACATTTAC SFV_1183 1226412 - 1226194 - | hypothetical protein SFV_1184 1226557 - 1226856 + | IS3 ORF1 TERM 1513 1227130 - 1227103 - g 75 -4.7 -4.74103 | overlap 1227104 1227105 CCTTTAACGTAAAAA CCGTGGCGGCA AGCCTG CGCCGTCAGGG ACTGAGGGCAAAGGC SFV_1185 1226853 - 1227707 + | IS3 ORF2 TERM 1514 1227951 - 1227963 + F 74 -3.3 -5.00616 | opp_overlap 1227951 1227952, overlap 1227936 CTGCGTTCGGTAAAA TCCCG GCG CGGCA TTTTTTGCCGGGGGG ycgL 1228065 - 1228391 + | hypothetical protein SFV_1187 1228463 - 1229122 + | hypothetical protein ycgN 1229214 - 1229660 + | hypothetical protein umuD 1231140 - 1231559 + | DNA polymerase V subunit UmuD umuC 1231559 - 1232827 + | DNA polymerase V subunit UmuC TERM 1515 1232864 - 1232847 - T 100 -12.7 -5.14965 | AGCGGCAGGAAAAAA GCGCTCC CGCA GGAGCGC CGAATGGATTAGCGA dsbB 1233403 - 1232873 - | disulfide bond formation protein B TERM 1516 1233030 - 1232997 - G 81 -4.5 -5.1287 | gap 1, overlap 1232999 TCCATACCTAAAAAA TC-CCACTGACGCTCG GCG CAATCGCCAGAGGCGA CAAACACTTGCGGCA TERM 1517 1233515 - 1233542 + r 79 -9.8 -3.79113 | opp_overlap 1233513 1233519, overlap 1233519 TATCGGGCGAAAAGG CAAACCGGGCAT TTAT ATGCCCGGTAAG TTGTTATCAAAGCGT TERM 1518 1233538 - 1233519 - R 100 -13.6 -3.92659 | opp_overlap 1233515 1233519, overlap 1233513 GGGCGAAAAGGCAAA CCGGGCAT TTAT ATGCCCGG TAAGTTGTTATCAAA TERM 1519 1233519 - 1233538 + r 83 -13.6 -2.68806 | opp_overlap 1233519 1233513, overlap 1233515 GGGCGAAAAGGCAAA CCGGGCAT TTAT ATGCCCGG TAAGTTGTTATCAAA nhaB 1235090 - 1233549 - | sodium/proton antiporter TERM 1520 1234032 - 1234014 - G 80 -5.3 -4.88736 | gap 1 GACTACCGAGAAAAA CACCGTCA ACAG TG-CGGTG AATGGCAGAGATTCG fadR 1235287 - 1236030 + | fatty acid metabolism regulator TERM 1521 1236068 - 1236053 - T 71 -10.4 -2.67021 | opp_overlap 1236053, overlap 1236052 CGTTTAAAGAGCAAC CCCCTC AAAC GAGGGG TTTTTTGTTGTTTTT TERM 1522 1236053 - 1236068 + T 100 -10.4 -5.80727 | opp_overlap 1236053 1236052 CGTTTAAAGAGCAAC CCCCTC AAAC GAGGGG TTTTTTGTTGTTTTT ycgB 1237614 - 1236082 - | hypothetical protein TERM 1523 1237025 - 1237037 + g 76 -4.1 -5.01732 | TGCCGGGCTTTCTCT TCTTG CAG CGAGA TTTTTTGCGGGCGTT dadA 1237944 - 1239242 + | D-amino acid dehydrogenase small subunit dadX 1239252 - 1240322 + | alanine racemase TERM 1524 1240429 - 1240455 + T 88 -12.5 -3.53224 | opp_overlap 1240431 AGCCATTGCCCATGA TAGTGTCCATT AAAAG AATGGACACTA TTTCCCCGGAACCTG TERM 1525 1240453 - 1240431 - T 72 -10.7 -2.78816 | opp_overlap 1240429 CCATTGCCCATGATA GTGTCCATT AAAAG AATGGACAC TATTTCCCCGGAACC ipaH 1241788 - 1240754 - | invasion plasmid antigen SFV_1199 1244251 - 1242515 - | potassium/proton antiporter ldcA 1245260 - 1244346 - | L,D-carboxypeptidase A mltE 1245246 - 1245971 + | murein transglycosylase E TERM 1526 1245979 - 1245993 + Tr 74 -5.6 -4.58283 | CGATGTAAATCAGTC GCGCAC TTT GTCCGC TTTTTCCCGGGCTTC ycgR 1246707 - 1245973 - | hypothetical protein ymgE 1246875 - 1247162 + | hypothetical protein TERM 1527 1247205 - 1247174 - T 70 -9.4 -3.33583 | opp_overlap 1247175, overlap 1247175 ATAAGATTTTCATAA GGCGGATAGCGATA CAGA TGCCGCTATCCGCT TTCACATCAGAACGT TERM 1528 1247204 - 1247175 - T 81 -12.9 -2.59668 | opp_overlap 1247175, overlap 1247174 TAAGATTTTCATAAG GCGGATAGCGATA CAGA TGCCGCTATCCGC TTTCACATCAGAACG TERM 1529 1247175 - 1247204 + T 90 -12.9 -3.59979 | opp_overlap 1247175 1247174 TAAGATTTTCATAAG GCGGATAGCGATA CAGA TGCCGCTATCCGC TTTCACATCAGAACG TERM 1530 1248229 - 1248241 + T 100 -4.7 -5.93252 | opp_overlap 1248229 TGTAATCGGAATAAT GGCTG TAG CTGCC TTTTTTATTTTTCAA modD 1250048 - 1249194 - | molybdenum transport protein ModD SFV_1206 1250752 - 1250048 - | hypothetical protein TERM 1531 1250759 - 1250784 + r 84 -5.3 -5.37043 | TTCCGCCATTTTCTC CGCCCGTTGAT CCCA GTGATCGGGCG TTTTTTCTGTGCGGT SFV_1207 1251625 - 1250867 - | iron ABC transporter ATP-binding protein SFV_1208 1252602 - 1251622 - | putative iron compound ABC transporter permease protein SFV_1209 1253624 - 1252602 - | putative ATP-binding protein of ABC transporter SFV_1210 1254164 - 1254976 + | hypothetical protein TERM 1532 1255146 - 1255135 - T 79 -4.4 -5.24129 | opp_overlap 1255135, overlap 1255142 1255144 TCTGTGTAGAAAAAA CCAT AGAT ATGG TGTTATCTGCCGACA TERM 1533 1255146 - 1255203 + T 71 -10.6 -2.74563 | gap 1, opp_overlap 1255144 1255142 1255163, overlap 1255163 AAAACCATAGATATG GTGTTATCTGCCGACAACGCCATCCGG AGAAG CCGAATGACGTTGTCGG-AGTAAGCGC TGGTTAAGGTGTGGG TERM 1534 1255187 - 1255163 - T 71 -10 -3.29511 | opp_overlap 1255146 1255163, overlap 1255144 1255142 GTTATCTGCCGACAA CGCCATCCGG AGAAG CCGAATGACG TTGTCGGAGTAAGCG treA 1256904 - 1255207 - | trehalase ycgC 1258573 - 1257224 - | dihydroxyacetone kinase subunit M TERM 1535 1258129 - 1258114 - G 74 -8.2 -4.00066 | overlap 1258117 TCGATAAGGTATAAA CCAGCC GGGA GGCCGG ACGTACATGCAGGCC SFV_1213 1259285 - 1258653 - | dihydroxyacetone kinase ADP-binding subunit TERM 1536 1258701 - 1258757 + g 73 -9.4 -3.5774 | gap 1, opp_overlap 1258694 1258748, overlap 1258755 CATAAACATCACCGA GGTCGCGCCGG-GATCCTGGTGACC AATACTGC GTTCACCGAGATAACTGGCGCGGCC TTTGCGGGCTTGCAT SFV_1214 1260366 - 1259296 - | dihydroxyacetone kinase subunit DhaK TERM 1537 1260481 - 1260501 + H 70 -9.9 -2.97934 | opp_overlap 1260480 1260481 1260483, overlap 1260483 AAAATTAGCCCAAAT TATGTTTCA TAG TGAAACATA TGCTTTAATGAATGT TERM 1538 1261475 - 1261487 + G 79 -4.7 -4.90302 | opp_overlap 1261475 ACCGATAATAGAAAC GCAGG GAA CCAGC TTTATTTTGTTGCTC TERM 1539 1261841 - 1261853 + G 72 -6.9 -4.15788 | GCTGGAACTGGCACA CGGCG GCA CGCTG TTTCTTGAAAAGATT SFV_1215 1260672 - 1262513 + | DNA-binding transcriptional regulator DhaR SFV_1216 1265480 - 1262613 - | putative adhesion and penetration protein TERM 1540 1266241 - 1266268 + r 75 -11.4 -3.10537 | opp_overlap 1266246, overlap 1266246 GGACTCGGTGAAATG AAAAATCCACGC AATT GCGTGGATTTTA TATACTTTTGCGCTC TERM 1541 1266263 - 1266246 - R 100 -11.3 -4.98531 | opp_overlap 1266241 1266246 CGGTGAAATGAAAAA TCCACGC AATT GCGTGGA TTTTATATACTTTTG TERM 1542 1266246 - 1266263 + r 95 -11.3 -4.6709 | opp_overlap 1266246, overlap 1266241 CGGTGAAATGAAAAA TCCACGC AATT GCGTGGA TTTTATATACTTTTG ychF 1267415 - 1266324 - | translation-associated GTPase TERM 1543 1266880 - 1266894 + g 70 -7.1 -4.11216 | CTTAAATCCAGCGCG CGCAG CATAC CTGCG TTTTCCAGCTGGGGC TERM 1544 1266954 - 1266965 + g 72 -5.8 -4.38927 | TTTCGCGTCTTTATC GCCA CCTT TGGC TTTCTTCTGTACGCG pth 1268116 - 1267532 - | peptidyl-tRNA hydrolase TERM 1545 1268202 - 1268186 - H 73 -2.2 -5.24129 | CCGCTTGACAAAAAA CTGCGT ATCAA ATGCAG ATAACGTAATAATTG ychH 1268394 - 1268672 + | hypothetical protein TERM 1546 1268689 - 1268718 + T 74 -11.5 -2.87963 | overlap 1268689 AAATAATGCAGTTTG CTGACCAGTCAGT TTGC GCTGACTGGTCAA TCTCGTACTTATAAA ychM 1270379 - 1268727 - | putative sulfate transporter YchM TERM 1547 1270512 - 1270499 - R 100 -9.5 -5.76633 | opp_overlap 1270497 1270499 TTACAGACAAAAAAA CCCGC CGCA GCGGG TCTTTGAGCCGGGTT TERM 1548 1270499 - 1270512 + r 73 -9.5 -3.34894 | opp_overlap 1270499, overlap 1270497 TTACAGACAAAAAAA CCCGC CGCA GCGGG TCTTTGAGCCGGGTT prsA 1271544 - 1270531 - | ribose-phosphate pyrophosphokinase TERM 1549 1271609 - 1271595 - R 75 -10 -3.62522 | CAACGTCTGGAACAA GGTGAC GTT GTCACC GAAACTCAGCTTGCC ychB 1272480 - 1271629 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase lolB 1273103 - 1272480 - | outer membrane lipoprotein LolB TERM 1550 1272555 - 1272565 + g 75 -6.8 -4.371 | overlap 1272551 CATATTGGCTGGCAT CGCA GGT TGCG TTTTGGTGTCATAAC TERM 1551 1272706 - 1272731 + g 73 -9.1 -3.5882 | CACTGGCGCAAGCTG TTGAGCGGAAT TGGC ATTCCGGTCAA TTTGCCAATCATCTC hemA 1273119 - 1274573 + | glutamyl-tRNA reductase TERM 1552 1275429 - 1275412 - g 79 -4.1 -5.1523 | TTCACAACATAAAAA CAAAGCG AAGG CGCTTTC AGTGCTCGGTGCTCG prfA 1274615 - 1275697 + | peptide chain release factor 1 TERM 1553 1276513 - 1276497 - g 72 -10.1 -3.31792 | TGACTATGGTGATAA CGAGCGC GTA ACGCTCG GCCGCTATTATCAAT hemK 1275697 - 1276530 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase SFV_1227 1276527 - 1276919 + | putative transcriptional regulator ychA 1276923 - 1277732 + | putative transcriptional regulator kdsA 1277768 - 1278622 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 1554 1278667 - 1278645 - T 80 -6.3 -4.85782 | opp_overlap 1278645 TGCTTGAAAAATAAA GTCTTAGCG TTCTG CGTTAAGAC TTTTTTCATGGGTGC TERM 1555 1278645 - 1278667 + T 100 -9.2 -5.1675 | opp_overlap 1278645 TGCTTGAAAAATAAA GTCTTAGCGT TCT GCGTTAAGAC TTTTTTCATGGGTGC TERM 1556 1278721 - 1278696 - T 100 -13.3 -5.4251 | opp_overlap 1278695 1278694 1278715 GCCAGATACAAAAAA GGCCGCAGG CTGTTACC CCTGCGGCC GGTTTCGGGCGCATA TERM 1557 1278727 - 1278762 + T 76 -7.5 -4.21768 | gap 1, overlap 1278715 CCCTGCGGCCGGTTT CGGGCG-CATATTGCC ATCAC GGCAGCCTGACGCCCG TTTTCACCTTACTTC TERM 1558 1278985 - 1279014 + T 89 -9.3 -4.59109 | overlap 1278987 TCTCAACGTGCGGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 1559 1278987 - 1279012 + T 100 -16.3 -3.90762 | overlap 1278985 TCAACGTGCGGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_1230 1280342 - 1278996 - | IS4 orf TERM 1560 1280360 - 1280329 - G 100 -13.9 -4.4017 | opp_overlap 1280332 CCAATGTGCATAAAA GAATCCGGAAACA AGTGAG CGTTTCCGGATTC TTACACAGCCACTGG TERM 1561 1280332 - 1280357 + g 73 -9.1 -3.61398 | opp_overlap 1280329 ATGTGCATAAAAGAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 1562 1280695 - 1280668 - R 100 -9.8 -5.26155 | opp_overlap 1280667 1280668 1280688, overlap 1280669 AGATAAAGACAAAAA TGGCCGCAGG CTGTTACC CCTGCGGCCG GTTTCGGGCGCATAT TERM 1563 1280668 - 1280695 + r 76 -12 -2.72263 | opp_overlap 1280668 1280669, overlap 1280667 1280688 AGATAAAGACAAAAA TGGCCGCAGG CTGTTACC CCTGCGGCCG GTTTCGGGCGCATAT TERM 1564 1280694 - 1280669 - R 95 -13.3 -3.73253 | opp_overlap 1280668 1280667 1280688, overlap 1280668 GATAAAGACAAAAAT GGCCGCAGG CTGTTACC CCTGCGGCC GGTTTCGGGCGCATA TERM 1565 1280700 - 1280735 + r 76 -7.5 -4.21768 | gap 1, overlap 1280688 CCCTGCGGCCGGTTT CGGGCG-CATATTGCC ATCAC GGCAGCCTGACGCCCG TTTTCACCTTACTTC SFV_1231 1280878 - 1280744 - | hypothetical protein TERM 1566 1280917 - 1280958 + r 80 -6.5 -4.78848 | gap 1, overlap 1280882 1280881 1280880 TGGTTTCAAGATTAG CCCCCGTTTTGTTGTCAGGT TTT ACCTCTCAACGTG-CGGGGG TTTTCTCTTTCCAGC chaA 1282443 - 1281256 - | calcium/sodium:proton antiporter TERM 1567 1282767 - 1282746 - g 72 -6.5 -4.30253 | overlap 1282749 TATAAAGATAAAGAA GATCGGCGT GATG ACGCCAGTC GCGAAGAAACCGCGC chaB 1282626 - 1282856 + | cation transport regulator chaC 1282993 - 1283709 + | cation transport regulator ychN 1284106 - 1283753 - | hypothetical protein ychP 1284431 - 1285684 + | hypothetical protein narL 1286335 - 1285685 - | transcriptional regulator NarL narX 1288124 - 1286328 - | nitrate/nitrite sensor protein NarX TERM 1568 1286402 - 1286379 - G 70 -6 -4.15044 | gap 1, opp_overlap 1286379 TTTTTCGGGAATAAA GGTGACCACCA CTT CGGT-GCCACC TGATTCACGACGGCG TERM 1569 1286909 - 1286884 - G 74 -8.3 -3.92542 | TGCATCTGTAAACAA CTCACCTGCAT CTTC ATGCAAGAGAG AGATTGGGCAATAGA TERM 1570 1287091 - 1287067 - G 79 -12.1 -3.04144 | TGGTCATGGCTAAGA TGACGCCCCTG CGG CAGGGTCGCCA GCAAAATACCGTACT TERM 1571 1288330 - 1288312 - H 74 -5.4 -4.60487 | overlap 1288314 CAGCACCGTGAAAAA TCTCATAA TTT TTATGAAA TCACTGTACTCACTA TERM 1572 1288649 - 1288659 + G 81 -6.8 -4.67038 | opp_overlap 1288649 GTTGCGGTGAACTTA CCGA AAG TCGG TTTTAATTTTACGAC narK 1288463 - 1289854 + | nitrate transport protein nark TERM 1573 1289878 - 1289896 + F 100 -16 -5.64274 | ATTTGATTATCCTTT GCGCGGCA TGA TGCCGCGC TTTTTTTATGCGTCA TERM 1574 1290061 - 1290081 + F 73 -11.3 -2.57988 | opp_overlap 1290064, overlap 1290060 1290058 ATAAAACGTCTTAAT TTACAGCAT GTT ATGCTGTAA CTGTTAATTATCCTA TERM 1575 1290533 - 1290514 - g 76 -10.6 -3.32769 | opp_overlap 1290532, overlap 1290507 CTGCCAAACCATGAA CCTCGCGG CTGC CCGCGCGG TGCCAGCTACTCCTG TERM 1576 1292648 - 1292661 + G 72 -6.7 -4.1552 | ACGACATGAATACTT CGGAT ATGC ATCCG TTTATTCACCCGCTG narG 1290247 - 1293990 + | nitrate reductase 1, alpha subunit TERM 1577 1294084 - 1294070 - g 75 -5.6 -4.60041 | AGTTACCTGTAAAAA CGTCTG GAC CAGCCG TGAAGGCGTGGAATA narH 1293987 - 1295525 + | nitrate reductase 1, beta subunit TERM 1578 1295659 - 1295633 - g 73 -9.5 -3.5771 | opp_overlap 1295638, overlap 1295623 1295636 AAAAATCTGTCGAAA GAAGATGCCCA TGCGC TGGGCATTTTC CTGCGCGATTTAACG TERM 1579 1295638 - 1295654 + G 76 -8 -4.25848 | opp_overlap 1295636 1295633 1295623 TCTGTCGAAAGAAGA TGCCCA TGCGC TGGGCA TTTTCCTGCGCGATT narJ 1295522 - 1296232 + | nitrate reductase 1, delta subunit narI 1296232 - 1296909 + | nitrate reductase 1, cytochrome b(NR), gamma subunit TERM 1580 1296931 - 1296946 + T 100 -8.2 -5.60993 | opp_overlap 1296931 TTTAGTTCACATAGA CCCTGC TTCG GCGGGG TTTTTTTATGGGCAC purU 1298357 - 1297515 - | formyltetrahydrofolate deformylase TERM 1581 1297560 - 1297548 - G 77 -6.9 -4.44448 | ATTACCGTAAACAAA GACGC GTT GCGCC AGTACTTTGTATAGC ychJ 1298865 - 1298407 - | hypothetical protein ychK 1298978 - 1299883 + | hypothetical protein hnr 1299975 - 1300988 + | response regulator of RpoS TERM 1582 1301891 - 1301881 - g 70 -4.6 -4.56597 | CGTTGCTGGCAAAAA CCCC TCC GGGA GCTGGTGATGAAATT galU 1301190 - 1302098 + | UTP--glucose-1-phosphate uridylyltransferase subunit GalU TERM 1583 1302125 - 1302146 + T 100 -12.3 -5.66684 | opp_overlap 1302102 1302125 GTGTTATCCACGAAA CGGCGTTGA GCAA TCGACGCCG TTTTTTTATAGCTTA TERM 1584 1302146 - 1302125 - T 79 -10.1 -3.76224 | opp_overlap 1302125, overlap 1302102 GTGTTATCCACGAAA CGGCGTTGA GCAA TCGACGCCG TTTTTTTATAGCTTA TERM 1585 1302198 - 1302214 + T 100 -13.7 -4.08767 | opp_overlap 1302198 CCGGACAATAAAAAA TCCCGCC GCT GGCGGGA TTTTAAGCAAGTGCA TERM 1586 1302214 - 1302198 - T 100 -13.7 -5.55769 | opp_overlap 1302198 CCGGACAATAAAAAA TCCCGCC GCT GGCGGGA TTTTAAGCAAGTGCA hns 1302655 - 1302242 - | global DNA-binding transcriptional dual regulator H-NS tdk 1303260 - 1303877 + | thymidine kinase TERM 1587 1304152 - 1304181 + T 72 -4.9 -4.59109 | overlap 1304154 GCCCCAGAAGGGGTA ATGCCTGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGAGCTGTG TERM 1588 1304154 - 1304179 + T 95 -11.9 -3.90762 | overlap 1304152 CCCAGAAGGGGTAAT GCCTGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGAGCTG SFV_1252 1305509 - 1304163 - | IS4 orf TERM 1589 1305527 - 1305496 - G 100 -13.9 -4.4017 | opp_overlap 1305499 CCAATGTGCATAAAA GAATCCGGAAACA AGTGAG CGTTTCCGGATTC TTACACAGCCACTGG TERM 1590 1305499 - 1305524 + g 73 -9.1 -3.61398 | opp_overlap 1305496 ATGTGCATAAAAGAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 1591 1305621 - 1305634 + r 83 -4.5 -5.28826 | opp_overlap 1305621 AGCGCTACTGATTAA GCGGA TTTT TTCGC TTTTTTCTCAGCTTT adhE 1308292 - 1305617 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 1592 1305651 - 1305661 + g 88 -8.2 -4.64763 | overlap 1305654 TTTTTCTCAGCTTTA GCCG GAG CGGC TTCTTTTTTCGCTGC TERM 1593 1305654 - 1305664 + g 77 -3.2 -5.09225 | overlap 1305651 TTCTCAGCTTTAGCC GGAG CGG CTTC TTTTTTCGCTGCAGT ychE 1308769 - 1309416 + | hypothetical protein TERM 1594 1309450 - 1309433 - f 76 -8.4 -4.05788 | opp_overlap 1309433, overlap 1309418 TCCTTTCAAATGAAA CGGAGC TGCCAT GCTCCG TTTACTTCGTCATTA TERM 1595 1309433 - 1309450 + F 74 -8.4 -3.98113 | opp_overlap 1309418 1309433 TCCTTTCAAATGAAA CGGAGC TGCCAT GCTCCG TTTACTTCGTCATTA TERM 1596 1309976 - 1309954 - f 73 -7.8 -4.08557 | GTCGCGAAAGAATAA TGTGTCTC GACAGGG GAGACACA GTACGAATCGACATA oppA 1310154 - 1311785 + | periplasmic oligopeptide binding protein TERM 1597 1311783 - 1311828 + F 78 -5.6 -4.87786 | gap 3, opp_overlap 1311786 1311794, overlap 1311785 1311787 TACATTGTGAAGCAC TAATGGCAATACGTGGGGCAGGA GTG TCCTGCTCCACG-G-TGCC-TGA TTTTTATCGCATTAC TERM 1598 1311787 - 1311825 + F 86 -13.3 -3.32317 | gap 2, opp_overlap 1311786 1311794, overlap 1311785 1311783 TTGTGAAGCACTAAT GGCAATACGTGGGGCAGGA GTG TCCTGCTCCACG-G-TGCC TGATTTTTATCGCAT TERM 1599 1311820 - 1311794 - f 100 -16.6 -3.10464 | opp_overlap 1311787 1311785 1311783, overlap 1311786 GCACTAATGGCAATA CGTGGGGCAGGA GTG TCCTGCTCCACG GTGCCTGATTTTTAT TERM 1600 1312280 - 1312298 + G 70 -4.4 -4.5442 | opp_overlap 1312280, overlap 1312265 1312282 TGGGGCTGGCAATGA CCGGGGTT GTT ATCCCCAG TTTTGTGGTTGCGCC TERM 1601 1312712 - 1312729 + G 74 -2.7 -4.93877 | overlap 1312702 1312695 1312719 TAAGCCTGACCATCC TGGTTGG TGCG TTAACCA TTTTGTTTAATGCCA oppB 1311871 - 1312791 + | oligopeptide transporter permease TERM 1602 1312838 - 1312826 - g 100 -9.1 -5.1963 | GTTAAGTAAGAAAAA CAGCG AGA CGCTG GAAAATTTCAGTGAA oppC 1312806 - 1313714 + | oligopeptide transport permease protein oppD 1313726 - 1314739 + | oligopeptide transporter ATP-binding component TERM 1603 1315592 - 1315574 - g 93 -8.8 -4.95547 | TGGAGAAGAACAAAA CCATCCAG TTA CTGGAAGG GGAATTACCGTCGCC oppF 1314736 - 1315740 + | ATP-binding protein of oligopeptide ABC transport system TERM 1604 1315775 - 1315744 - T 93 -10.2 -4.57073 | opp_overlap 1315750, overlap 1315747 1315750 GATCCGCTTTAAAAA CAATAAGGGCTGAC AGTT GTCAGCCCTTTTTC ACGCTAAAAGCGATT TERM 1605 1315772 - 1315747 - T 100 -11.9 -4.40561 | opp_overlap 1315750, overlap 1315744 1315750 CCGCTTTAAAAACAA TAAGGGCTGAC AGTT GTCAGCCCTTT TTCACGCTAAAAGCG TERM 1606 1315750 - 1315769 + T 100 -13.6 -4.59773 | opp_overlap 1315747 1315744 1315750 CTTTAAAAACAATAA GGGCTGAC AGTT GTCAGCCC TTTTTCACGCTAAAA TERM 1607 1315769 - 1315750 - T 100 -13.6 -4.31587 | opp_overlap 1315750, overlap 1315747 1315744 CTTTAAAAACAATAA GGGCTGAC AGTT GTCAGCCC TTTTTCACGCTAAAA SFV_1260 1316200 - 1315793 - | dsDNA-mimic protein cls 1317533 - 1316157 - | cardiolipin synthetase TERM 1608 1316198 - 1316186 - G 78 -9.1 -3.88577 | overlap 1316184 TGAAGAAGTAAAACA GTCGC TCG GCGAC ACGTTGCCATAATGG TERM 1609 1316824 - 1316795 - GR 79 -8.5 -4.2461 | opp_overlap 1316797, overlap 1316798 1316799 AGTCGCAGGAATAAA TAATCCCCATCGC GGTG GCGATGGGGCCTT CCATACGCGCCATCA TERM 1610 1316821 - 1316798 - GR 95 -12.4 -4.24413 | opp_overlap 1316797, overlap 1316795 1316799 CGCAGGAATAAATAA TCCCCATCGC GGTG GCGATGGGGC CTTCCATACGCGCCA TERM 1611 1316820 - 1316799 - GR 100 -15.9 -3.13925 | opp_overlap 1316797, overlap 1316798 1316795 GCAGGAATAAATAAT CCCCATCGC GGTG GCGATGGGG CCTTCCATACGCGCC TERM 1612 1317084 - 1317061 - GR 74 -3 -5.00616 | overlap 1317065 GGGCTGCGGAAAAAA GCCACACTCC CGGC GGAGTCGAGC ATCAATCGGCAATGA TERM 1613 1317964 - 1317935 - R 72 -8.7 -3.79071 | gap 1, opp_overlap 1317931 1317930 1317935 1317936 1317939, overlap 1317936 1317939 TCTACAATATCTAAA TGTACTGGGCACCA TTG CGGTGCCCAATA-A GTTTACTCTTCCGTC TERM 1614 1317964 - 1317936 - R 72 -10.3 -2.86961 | opp_overlap 1317935 1317931 1317930 1317936 1317939, overlap 1317935 1317939 CTACAATATCTAAAT GTACTGGGCACCA TTG CGGTGCCCAATAA GTTTACTCTTCCGTC TERM 1615 1317961 - 1317939 - R 76 -12 -2.67958 | opp_overlap 1317936 1317935 1317931 1317930 1317939, overlap 1317935 1317936 CAATATCTAAATGTA CTGGGCACCA TTG CGGTGCCCAA TAAGTTTACTCTTCC kch 1319241 - 1317988 - | voltage-gated potassium channel TERM 1616 1319524 - 1319494 - H 76 -9.1 -3.74178 | opp_overlap 1319497, overlap 1319500 TAAGGAAAGGCCAAA CAAGAACACGGTT GCAAA AACCGTGCCCTTA AATATTGGATCTCTA TERM 1617 1319518 - 1319500 - H 79 -8.9 -4.1023 | opp_overlap 1319497, overlap 1319494 AAGGCCAAACAAGAA CACGGTT GCAAA AACCGTG CCCTTAAATATTGGA SFV_1263 1319604 - 1319906 + | IS600 ORF1 SFV_1264 1320047 - 1320760 + | IS600 ORF2 yciI 1321104 - 1320808 - | YciI-like protein TERM 1618 1321973 - 1321963 - g 81 -6.8 -4.62069 | GCGTGAGGTGAAAAA TGCG ATG CGCA GATGGCGTTATGAGC tonB 1321277 - 1322059 + | transport protein TonB TERM 1619 1322065 - 1322098 + T 100 -16.9 -3.14564 | opp_overlap 1322067 1322074, overlap 1322067 1322074 AATTCAGTAAGCAGA AAGTCAAAAGCCTCC GACC GGAGGCTTTTGACTA TTACTCAACAGGTAA TERM 1620 1322067 - 1322096 + T 100 -19.5 -3.13522 | opp_overlap 1322067 1322074, overlap 1322065 1322074 TTCAGTAAGCAGAAA GTCAAAAGCCTCC GACC GGAGGCTTTTGAC TATTACTCAACAGGT TERM 1621 1322096 - 1322067 - T 100 -19.5 -4.08144 | opp_overlap 1322067 1322065 1322074, overlap 1322074 TTCAGTAAGCAGAAA GTCAAAAGCCTCC GACC GGAGGCTTTTGAC TATTACTCAACAGGT TERM 1622 1322074 - 1322089 + T 90 -10.4 -4.29325 | opp_overlap 1322067 1322074, overlap 1322067 1322065 AGCAGAAAGTCAAAA GCCTCC GACC GGAGGC TTTTGACTATTACTC TERM 1623 1322089 - 1322074 - T 93 -10.4 -4.40173 | opp_overlap 1322074 1322067 1322065, overlap 1322067 AGCAGAAAGTCAAAA GCCTCC GACC GGAGGC TTTTGACTATTACTC yciA 1322497 - 1322099 - | acyl-CoA thioester hydrolase TERM 1624 1322550 - 1322516 - R 90 -10.8 -4.22948 | overlap 1322522 AAAACCGACTTAAAA GGAAAATCACAGGCGC GAT GCTACTATGATTTTCC TGAGGAGAACAGAGG yciB 1323141 - 1322602 - | intracellular septation protein A TERM 1625 1322832 - 1322848 + g 72 -4.3 -4.7254 | overlap 1322805 1322833 GTTCTTTACTCAGCA TCCGCTG AAT TAGCGGC TTTTTCATCACCCAT yciC 1323914 - 1323171 - | hypothetical protein TERM 1626 1324330 - 1324348 + G 82 -3 -5.28176 | overlap 1324332 TTCTGGCAGTGCCTT TGCGCATG AAG CAGGCGAA TTTTTTATGCGTGCA yciD 1324271 - 1324909 + | outer membrane protein W TERM 1627 1324945 - 1324923 - T 100 -14.2 -4.84017 | overlap 1324900 1324924 AATTCCGCACAAAAA CGACCCCGTA ATA TACGGGGTCA ATAAGGACATGGTAT TERM 1628 1324944 - 1324924 - T 100 -15.5 -3.49687 | overlap 1324900 1324923 ATTCCGCACAAAAAC GACCCCGTA ATA TACGGGGTC AATAAGGACATGGTA yciE 1325475 - 1324969 - | hypothetical protein TERM 1629 1325307 - 1325323 + g 71 -2.2 -5.00138 | GATCAAGAATAGTTT CCAGTT GAACA ATCTGG TTTTTGGTTTCACTA yciF 1326021 - 1325521 - | putative structural protein TERM 1630 1326063 - 1326042 - R 85 -13.7 -2.94144 | opp_overlap 1326039, overlap 1326039 TCTCCAGTGAAATCA CTGCGAGCC ATAC GGCCCGCAG ATGCAATTATCTTTA yciG 1326343 - 1326107 - | hypothetical protein TERM 1631 1326660 - 1326638 - R 95 -11.2 -4.45261 | overlap 1326639 TAAAGAAAGTTAAAA TGCCGCCAGC GGA ACTGGCGGCT GTGGGATTAACTGCG TERM 1632 1326659 - 1326639 - R 90 -14.7 -3.2553 | overlap 1326638 AAAGAAAGTTAAAAT GCCGCCAGC GGA ACTGGCGGC TGTGGGATTAACTGC trpA 1327473 - 1326667 - | tryptophan synthase subunit alpha trpB 1328666 - 1327473 - | tryptophan synthase subunit beta trpC 1330039 - 1328678 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase TERM 1633 1328769 - 1328781 + g 86 -10.5 -3.89614 | opp_overlap 1328768 1328767 1328764 GAATTAAAATCAAGT CCGGC GCA GCCGG TTTGTGCCGCTTCCA trpD 1331635 - 1330040 - | bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase TERM 1634 1330959 - 1330983 + g 74 -6.4 -4.46854 | gap 1, overlap 1330960 TTCAGCTCGCCACGC ACCACC-GCTG AAAA CAGCTGGTGGC TTTCTTGTTGGCTAA TERM 1635 1330960 - 1330982 + g 70 -9.9 -3.27389 | gap 1, overlap 1330959 TCAGCTCGCCACGCA CCACC-GCTG AAAA CAGCTGGTGG CTTTCTTGTTGGCTA trpE 1333197 - 1331635 - | anthranilate synthase component I TERM 1636 1333172 - 1333182 + g 82 -3.2 -5.20783 | TCGCAGGTTAGCAGT TCGA GAG TCGG TTTTTGTGTTTGCAT TERM 1637 1333245 - 1333227 - H 100 -8.8 -5.75342 | TTTGTTCAAAAAAAA GCCCGC TCATTAG GCGGGC TGGGTATCTGATTGC yciV 1333492 - 1334352 + | putative enzymes TERM 1638 1334503 - 1334492 - gf 79 -3.6 -5.1167 | AATTGAAGATAAAAA CGCC ATGG AGCG TATTTGTCGTATTCG yciO 1334313 - 1334969 + | hypothetical protein TERM 1639 1335020 - 1335003 - f 76 -8.4 -4.07885 | opp_overlap 1335003 1334999 TACGCGGCTTTAAAA TGGCGC TATACG GCGCCA TTGATTCTCCTGTTC TERM 1640 1335003 - 1335020 + F 72 -9.1 -3.49851 | opp_overlap 1335003, overlap 1334999 TACGCGGCTTTAAAA TGGCGCT ATAC GGCGCCA TTGATTCTCCTGTTC yciL 1335070 - 1335942 + | 23S rRNA pseudouridylate synthase B TERM 1641 1335951 - 1335971 + T 84 -8.3 -4.62872 | opp_overlap 1335948 1335951 CGGTTAATCAAAGTA TGCCGGA CGTCATA TCCGGCA TTTTTACAGATTAAT btuR 1336572 - 1335982 - | cob(I)yrinic acid a,c-diamide adenosyltransferase yciK 1337327 - 1336569 - | short chain dehydrogenase TERM 1642 1337667 - 1337655 - H 83 -9.1 -4.2528 | GCTCAACGTAATAAA CGCCA GCG TGGCG AGTTACGGGTCAACA sohB 1337706 - 1338596 + | putative periplasmic protease TERM 1643 1338605 - 1338624 + F 93 -10.7 -4.58773 | opp_overlap 1338605 GATGTAAAAGACAAA CGCGAGG CTAAAA CCTCGCG TTTTGCTTTAATCAA TERM 1644 1338624 - 1338605 - f 95 -11.4 -4.46775 | opp_overlap 1338605 GATGTAAAAGACAAA CGCGAGGC TAAA ACCTCGCG TTTTGCTTTAATCAA TERM 1645 1339411 - 1339400 - g 70 -4.4 -4.58395 | CTCAGCTGCCAAAAA GAGT GCCG ACTC TACCTCCACCAAGAC TERM 1646 1340067 - 1340052 - g 74 -6 -4.56775 | AGTCTGCTGGAAAAA GCGCGC TACA GCGTGC TGGAACGTGAAGACA TERM 1647 1340184 - 1340173 - g 90 -4.4 -5.40072 | TTGGCGTGAAAAAAA CCAT GATG ATGG CGCAGCGTTTGTATG topA 1339221 - 1341860 + | DNA topoisomerase I TERM 1648 1341884 - 1341916 + F 74 -10.8 -3.29121 | gap 1, opp_overlap 1341892, overlap 1341892 TCTGTCAGGTTTTTA TAAACAAAGGGTCGC GAAA GCGGCCCTTT-TTTA TTGCATATTATTTTT TERM 1649 1341892 - 1341909 + F 100 -10.5 -5.49234 | opp_overlap 1341892, overlap 1341884 GTTTTTATAAACAAA GGGTCGC GAAA GCGGCCC TTTTTTATTGCATAT TERM 1650 1341909 - 1341892 - f 81 -8.3 -4.55295 | opp_overlap 1341892 1341884 GTTTTTATAAACAAA GGGTCGC GAAA GCGGCCC TTTTTTATTGCATAT cysB 1342070 - 1343044 + | transcriptional regulator CysB TERM 1651 1343058 - 1343091 + F 73 -9.7 -3.35613 | overlap 1343055 AATTTCTTGCGTTAT TTTCGGCACCTTT TATGTAGC GAAGGTGCCGGAA TATATTCTCTTTTGT SFV_1287 1343339 - 1343503 + | hypothetical protein SFV_1288 1343507 - 1343674 + | hypothetical protein TERM 1652 1343891 - 1343906 + F 93 -11.8 -3.66643 | CTCACTGATCCTTGA CCCCGC TGCG GCGGGG TTGTCATTTGCTTTG TERM 1653 1344411 - 1344450 + G 75 -7.3 -4.32034 | gap 2, overlap 1344410 TTAACCCGCTCTCAC CGGTCGACCTGGTCATTGA CCAC TCGGTGACC-G-TCGATCG TTTTGGTGATGATGA TERM 1654 1346341 - 1346331 - g 72 -8.2 -3.82433 | opp_overlap 1346330, overlap 1346321 ATAAGCAGGAGCAAA CGCC GCT GGCG GTGATTGCCGGGAAA acnA 1344047 - 1346722 + | aconitate hydratase TERM 1655 1346763 - 1346729 - T 78 -11.6 -2.98947 | opp_overlap 1346729, overlap 1346726 TTGAAGTAACAAGTA TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA TGAATTACACGATGC TERM 1656 1346729 - 1346763 + T 76 -11.6 -2.52896 | opp_overlap 1346726 1346729 TTGAAGTAACAAGTA TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA TGAATTACACGATGC ribA 1347376 - 1346786 - | GTP cyclohydrolase II pgpB 1347546 - 1348310 + | phosphatidylglycerophosphatase B yciS 1348459 - 1348767 + | hypothetical protein TERM 1657 1349581 - 1349567 - g 70 -7.1 -4.08945 | AGCAGTTGGGTAAAA CTGCC GAATG GGCAG AATTCCTGCAACGCG yciM 1348828 - 1349943 + | hypothetical protein pyrF 1350136 - 1350873 + | orotidine 5'-phosphate decarboxylase yciH 1350873 - 1351199 + | translation initiation factor Sui1 TERM 1658 1351208 - 1351227 + T 100 -13.6 -3.71687 | opp_overlap 1351208, overlap 1351201 CGGTTAACATAAAAA GCCACGGA TATA TCCGTGGC TTTCGAATATTTTAC TERM 1659 1351227 - 1351208 - T 100 -13.6 -5.0916 | opp_overlap 1351208 1351201 CGGTTAACATAAAAA GCCACGGA TATA TCCGTGGC TTTCGAATATTTTAC osmB 1351543 - 1351325 - | lipoprotein SFV_1297 1352561 - 1351812 - | putative DEOR-type transcriptional regulator SFV_1298 1352824 - 1352651 - | hypothetical protein TERM 1660 1355169 - 1355145 - R 100 -13.6 -4.42062 | GAGCGGGGAAATAAA CGGCCCATCC ATGAG GAATGGGCCG TGAAAGGAGATTACG rnb 1357114 - 1355180 - | exoribonuclease II TERM 1661 1355365 - 1355354 - G 72 -7.2 -4.15222 | opp_overlap 1355354 1355353 AGGTGCCGGAATAAA GGCG ATAG CGCC GTTATCAACCAAACG TERM 1662 1355432 - 1355443 + g 75 -7.2 -4.32857 | opp_overlap 1355427, overlap 1355427 1355419 CGCCGCGAAACGGGT GCCG GTCC CGGC TTTATCTTTCAGGAA yciW 1358309 - 1357182 - | putative oxidoreductase TERM 1663 1357818 - 1357807 - G 75 -4.4 -4.75309 | opp_overlap 1357807 TGAAAGCCAATAAAA CCAA TGAT TTGG TTAATGATCACACAG TERM 1664 1358414 - 1358434 + r 73 -9.6 -3.34398 | opp_overlap 1358414 1358415, overlap 1358412 1358415 GTATAACAGAGATAA CGGGCGGC AGAAC GCCGCCCA TCTTTACCAACAGAA TERM 1665 1358434 - 1358414 - R 93 -12.5 -3.71149 | opp_overlap 1358414 1358412 1358415, overlap 1358415 GTATAACAGAGATAA CGGGCGGCA GAA CGCCGCCCA TCTTTACCAACAGAA TERM 1666 1358433 - 1358415 - R 84 -13.8 -2.81966 | opp_overlap 1358415 1358414 1358412, overlap 1358414 TATAACAGAGATAAC GGGCGGCA GAA CGCCGCCC ATCTTTACCAACAGA TERM 1667 1358415 - 1358433 + r 81 -13.1 -2.60496 | opp_overlap 1358414 1358415, overlap 1358414 1358412 TATAACAGAGATAAC GGGCGGC AGAAC GCCGCCC ATCTTTACCAACAGA fabI 1359241 - 1358453 - | enoyl-(acyl carrier protein) reductase TERM 1668 1359589 - 1359630 + r 100 -15.1 -3.20723 | gap 1 AACAGCTATTCGGCT CGGTCGG-CCCCCTCGCCCT TTC AGGGTGAGGGTGACCGGCGG TTCAGTTCCTGCAGA ycjD 1359959 - 1359609 - | hypothetical protein TERM 1669 1359958 - 1360004 + g 100 -19.8 -2.62184 | GATTTTATTTTATCC ATCACCTCATTCTGACAAGA TTTAATC TCTTGTCAGAATGAGGTGAA TAATCTGGAAGGAGG sapF 1360836 - 1360030 - | putative ATP-binding protein of peptide transport system TERM 1670 1360779 - 1360796 + g 77 -6.9 -4.45664 | opp_overlap 1360775 1360774 1360778 1360779 GACGACGAAACCAAC CGGTCCG GTAG CGGAACG TTTTACTTAAATTAC sapD 1361830 - 1360838 - | putative ATP-binding protein of peptide transport system sapC 1362720 - 1361830 - | peptide transport permease protein TERM 1671 1362436 - 1362415 - G 86 -10.9 -3.96892 | gap 1 AAGCGTCACCACAAA TGCGCC-ACC CAC GGTTGGCGCA GCTCCGCTCAGTAAA TERM 1672 1362658 - 1362691 + g 91 -10.9 -4.26188 | gap 1, opp_overlap 1362657 GTCACTATAAAATTT GCGCCAGGC-GGTACG CAG CGTGCCCGGCGGGCGC TTTTCGCTGTATACG sapB 1363672 - 1362707 - | peptide transport permease protein sapA 1365312 - 1363669 - | peptide transport periplasmic protein TERM 1673 1365220 - 1365209 - G 81 -7.2 -4.68545 | overlap 1365202 ACGCAATAGACAAAA CCGC TGTC GCGG ATATCAGCATGCGGG TERM 1674 1365416 - 1365448 + r 100 -15.7 -3.16039 | opp_overlap 1365425, overlap 1365403 GGCCGTGTGGTTGGT CGTTGAACAGGTGGC GTC GCCATCTGTTCAACA TTCGTACCCGTGATT ymjA 1365870 - 1365625 - | hypothetical protein TERM 1675 1365995 - 1365954 - R 100 -16 -3.12351 | gap 1, opp_overlap 1365947, overlap 1365985 TCTTTTTATAGTTAA TGGCGCGGCGCGTTACCCT CAGGC AGGATAATGCGCCGCG-CA TCCGGCTATTACGTT ycjJ 1367389 - 1366004 - | putative amino acid/amine transport protein TERM 1676 1366190 - 1366209 + g 71 -2.9 -4.81082 | gap 1, opp_overlap 1366190 1366191, overlap 1366190 1366191 CGGCATCAGCAAATA G-TGGAAG TGATC CTTCCAGC TTTTATTCATTCCTT SFV_1311 1369110 - 1367692 - | putative glutamine synthetase TERM 1677 1368318 - 1368328 + g 70 -5.4 -4.4009 | CCATAAAAGTGGCGT GCAT CTT ATGC TTTTCTGCCATCAGA ycjL 1369449 - 1370087 + | gamma-glutamyl-gamma-aminobutyrate hydrolase ycjC 1370284 - 1370670 + | DNA-binding transcriptional repressor PuuR TERM 1678 1370755 - 1370741 - f 81 -8.5 -4.55295 | GTCGCCAGAAATAAA CGGGC ATGCA GCCCG GGGATCTCTGCGCCC TERM 1679 1370983 - 1370971 - g 74 -7.7 -4.07885 | CACCGCTGGCGAAAA TTGCC CGC GGCAA GAGCGTCGATATCGA TERM 1680 1371688 - 1371675 - g 77 -5.9 -4.59773 | opp_overlap 1371678 CCGGATCTGCAAAAA GCGGC AAGC GCCAC CGCCGCAGGCATCTT aldH 1370820 - 1372307 + | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase TERM 1681 1372770 - 1372759 - g 70 -5.8 -4.1822 | overlap 1372761 CGCTACGGCAATAAA CAGC TGGA GCTG CTGGACGTCAACGCT TERM 1682 1373293 - 1373276 - g 71 -2.7 -4.84363 | CGAAACTACTAAAAA CCTTC CCTCAGTT GAAGG GCGTGAAAATTGATT TERM 1683 1373512 - 1373534 + G 70 -11.2 -2.72511 | overlap 1373511 CATTACCCGTTCCCC GGCGGGCGCA CGC TGCGCGTGCC ATTTACCGCGATGGG ordL 1372309 - 1373589 + | oxidoreductase TERM 1684 1374484 - 1374502 + G 75 -11.6 -3.05816 | CGCGAATATTATGGA CGCGCCCG CGC CGGGCGGG TTGGGTGGCACCTAC goaG 1373627 - 1374892 + | PLP-dependent GABA aminotransferase pspF 1375989 - 1375012 - | phage shock protein operon transcriptional activator TERM 1685 1375111 - 1375125 + g 93 -8.6 -4.77438 | opp_overlap 1375110 1375113 CCCCTGTTGCAAACT GAGTTG CAG CAACTC TTTTTCCTGCTGCAT TERM 1686 1376739 - 1376729 - g 82 -3.2 -5.27335 | opp_overlap 1376732 TTCGGTAAACAAAAA TCGC TGG ACGA TCAGTTTGCCGAACT pspA 1376156 - 1376824 + | phage shock protein PspA pspB 1376878 - 1377102 + | phage shock protein B pspC 1377102 - 1377461 + | DNA-binding transcriptional activator PspC pspD 1377458 - 1377691 + | peripheral inner membrane phage-shock protein pspE 1377734 - 1378081 + | thiosulfate:cyanide sulfurtransferase (rhodanese) TERM 1687 1378098 - 1378113 + F 100 -11.8 -6.02914 | AGAATTCACCATGAG CGGCGC TTAT GCGCCG TTTTTTTTCTGTCAC insB 1379646 - 1380149 + | IS1 ORF2 TERM 1688 1381802 - 1381786 - f 73 -7.9 -4.15044 | CTGCCGGTGAATAAA GCGGTTG TCA CTACCGC CACCTGGAAAGACAA ycjO 1382067 - 1382948 + | putative binding-protein dependent transport protein ycjP 1382935 - 1383777 + | putative transport system permease protein TERM 1689 1383949 - 1383921 - g 76 -11 -3.40597 | opp_overlap 1383943, overlap 1383893 1383919 CGGCGCACCGAAACA CGGAACGGAAGT GGTCG ACTTCCGCGCCG CCAGCCCGTTTATCG ycjQ 1383808 - 1384860 + | putative oxidoreductase TERM 1690 1385804 - 1385764 - f 71 -10.3 -2.72344 | opp_overlap 1385773 CTGCACCCGCAACGA TCTGGAACTGGTGGCTGTC TGT GACAGCCGCCTTTCCCAGG CGCAGGCGCTGGCAG TERM 1691 1385773 - 1385795 + F 100 -15.6 -3.53012 | opp_overlap 1385764 CAACGATCTGGAACT GGTGGCTGTC TGT GACAGCCGCC TTTCCCAGGCGCAGG ycjT 1386714 - 1388981 + | hypothetical protein ycjU 1388978 - 1389637 + | putative beta-phosphoglucomutase TERM 1692 1390524 - 1390500 - g 79 -12.1 -3.05963 | ATCGTGATGGGAATA CGCCCGGAAGA TAT TCATCCGGACG CGCAAGAGGAAAATA ycjV 1389651 - 1390619 + | putative ATP-binding component of a transport system TERM 1693 1390757 - 1390736 - T 73 -10.1 -3.36569 | overlap 1390734 1390738 GCAATTCGCTAAATA CAGGGGGAA GGCA TTCCCCCAG GATAATACAAGGAAC TERM 1694 1390755 - 1390738 - T 77 -11.3 -3.24976 | overlap 1390736 1390734 AATTCGCTAAATACA GGGGGAA GGCA TTCCCCC AGGATAATACAAGGA TERM 1695 1391770 - 1391729 - T 95 -12.3 -3.92373 | TATCCGATCTATAAA TGTAGGCCGGATAAGATGC GCCA GCATCGCATCCGGCATTCA GGCAAGGTAGCTGGT ycjW 1392786 - 1391788 - | putative LACI-type transcriptional regulator TERM 1696 1392563 - 1392553 - G 79 -4.6 -4.98522 | AACTTCAGAGAAAAA CGGA TTA CCCG CCGTAGTTTTGGTCG ycjX 1392942 - 1394339 + | hypothetical protein ycjF 1394336 - 1395397 + | hypothetical protein tyrR 1395545 - 1397086 + | DNA-binding transcriptional regulator TyrR TERM 1697 1397135 - 1397081 - T 72 -8.9 -3.63862 | gap 2, opp_overlap 1397083 1397089 1397094, overlap 1397087 1397096 CAGAAGAAGAACGAA GAGTAAGCGCGAATATGCCTGATGGTG CAA CACCATCAGGCATATT-A-ACTTATGC TTTCAGTACAGCCAG TERM 1698 1397083 - 1397135 + T 86 -12.1 -3.64703 | opp_overlap 1397081 1397087 1397096, overlap 1397089 1397094 GAAGAAGAACGAAGA GTAAGCGCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAACTTATGC TTTCAGTACAGCCAG TERM 1699 1397131 - 1397087 - T 90 -13.7 -3.4382 | opp_overlap 1397083 1397089 1397094, overlap 1397081 1397096 AAGAACGAAGAGTAA GCGCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAACTT ATGCTTTCAGTACAG TERM 1700 1397089 - 1397129 + T 100 -18.5 -3.61609 | opp_overlap 1397087 1397081 1397096, overlap 1397083 1397094 GAACGAAGAGTAAGC GCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAAC TTATGCTTTCAGTAC TERM 1701 1397094 - 1397124 + T 100 -21.4 -3.27601 | opp_overlap 1397087 1397081 1397096, overlap 1397089 1397083 AAGAGTAAGCGCGAA TATGCCTGATGGTG CAA CACCATCAGGCATA TTAACTTATGCTTTC TERM 1702 1397122 - 1397096 - T 100 -19.6 -3.06737 | opp_overlap 1397094 1397089 1397083, overlap 1397087 1397081 GAGTAAGCGCGAATA TGCCTGATGGTG CAA CACCATCAGGCA TATTAACTTATGCTT tpx 1397636 - 1397130 - | thiol peroxidase ycjG 1397755 - 1398720 + | putative muconate cycloisomerase I ycjI 1399483 - 1398695 - | murein peptide amidase A TERM 1703 1399404 - 1399389 - G 73 -11.8 -2.71712 | overlap 1399388 GTTCCGGGCGGAAAT GCGCCG CGTT CGGCGC GTGAGCGGGTTACGG TERM 1704 1399474 - 1399487 + g 75 -5.3 -4.63932 | TTGTGCAAATTTTGC GGATT ATCA AATCC TTTTCTTCAACGCTA TERM 1705 1399670 - 1399694 + r 73 -11.5 -2.74865 | opp_overlap 1399670 1399680, overlap 1399667 AATAAGTTTAATAAA TCGTACTGAAC ATA GTACAGTACGA TGGTATCTATATAAT TERM 1706 1399694 - 1399670 - R 91 -11.5 -4.22591 | opp_overlap 1399667 1399670, overlap 1399680 AATAAGTTTAATAAA TCGTACTGAAC ATA GTACAGTACGA TGGTATCTATATAAT SFV_1343 1400352 - 1399714 - | hypothetical protein SFV_1344 1400900 - 1400370 - | hypothetical protein TERM 1707 1400657 - 1400683 + g 70 -5 -4.4891 | ACAACATTTTTGTCG CACCTCCCGG TTGTTGC CCGCGTGGTG TTTTATAGTAGTCAG TERM 1708 1401343 - 1401318 - g 71 -3.3 -4.74518 | gap 1, opp_overlap 1401326, overlap 1401319 1401333 AACGACGAAAACAAA CTCAGGTC-GCT AAT ATCTGACCTGAA ACAACATGGTCAGAT TERM 1709 1402323 - 1402351 + G 71 -3.2 -4.82901 | AGACGACGCTGCGAC GTTCTGTTCGC-CA TGA TGCGCGA-CGGGAC TTTTTATACCCCGCA SFV_1345 1401180 - 1402376 + | ISSfl2 ORF SFV_1346 1402752 - 1402390 - | hypothetical protein SFV_1347 1403669 - 1402752 - | hypothetical protein SFV_1348 1405002 - 1404289 - | IS600 ORF2 SFV_1349 1405445 - 1405143 - | IS600 ORF1 SFV_1350 1405782 - 1406120 + | IS911 ORF1 TERM 1710 1406579 - 1406568 - g 77 -5.8 -4.63218 | opp_overlap 1406573 CTGTTCGCAAGAAAA CCAG TGGG CTGG GCCATGTCGTTCTCG SFV_1351 1406421 - 1406987 + | IS911 ORF2 SFV_1352 1408131 - 1407226 - | insertion element IS2 transposase InsD SFV_1353 1408499 - 1408089 - | insertion sequence 2 OrfA protein TERM 1711 1408633 - 1408615 - H 79 -10.3 -3.6215 | opp_overlap 1408608 1408618 1408619 1408625 CTAACCCATCCCAAA CCCTTCC CTTCC GGAAGGG AGTTTCGGGATTTTG SFV_1354 1408711 - 1409286 + | putative bacteriophage protein SFV_1355 1409293 - 1410039 + | putative replication protein TERM 1712 1410600 - 1410588 - g 70 -5.5 -4.37886 | TTATTTCCGATAAAA GAGGA TGA CCCTC GTAATCAGGTTAATT SFV_1356 1410534 - 1410890 + | putative bacteriophage protein TERM 1713 1410976 - 1410961 - f 77 -11.8 -2.85402 | overlap 1410953 CAAATCATCAGGAGA CCGCCC GAAA GGGCGG TAATGAATGGTTACA SFV_1357 1410983 - 1411201 + | hypothetical protein SFV_1358 1411565 - 1412230 + | hypothetical protein SFV_1359 1412230 - 1412664 + | putative bacteriophage protein TERM 1714 1412701 - 1412669 - T 100 -16.5 -4.15044 | opp_overlap 1412675, overlap 1412675 GTTGGGGTTAACAAA CAAAAACCCCGGA TTGATGG TCCGGGGTTTTTG AAGGAAACAAAACAG TERM 1715 1412675 - 1412695 + T 95 -11.1 -4.56597 | opp_overlap 1412669 1412675 GTTAACAAACAAAAA CCCCGGATT GAT GGTCCGGGG TTTTTGAAGGAAACA TERM 1716 1412695 - 1412675 - T 100 -9.7 -5.47159 | opp_overlap 1412675, overlap 1412669 GTTAACAAACAAAAA CCCCGGA TTGATGG TCCGGGG TTTTTGAAGGAAACA TERM 1717 1412738 - 1412714 - T 74 -3.6 -4.99947 | gap 1, overlap 1412716 TTGAAGGAAACAAAA CAGA-AACAGC AATT GCCGTTACCTG TTGTTACCATGGCAA TERM 1718 1412974 - 1412924 - T 100 -12.1 -4.64844 | gap 1 GGCAGACAGAGAAAA GCCCCAG-TTAACATTACGCGTCC TGCA AGACGCTTAACATTAATCTGAGGC CCAATCTATGTCTCA TERM 1719 1413068 - 1413053 - T 83 -9 -4.36411 | TATGAAGCAGCAAAA GGCGAT GTTA ATCGCC CTGATCGTCATCTGT TERM 1720 1413223 - 1413202 - T 74 -11.5 -2.77416 | opp_overlap 1413199 1413197 1413194, overlap 1413195 AGGAGTAAGAGACCA GGCGGGGGA GAAA TCCCTCGCC ACCTCTCATGTGTCA TERM 1721 1413265 - 1413278 + T 100 -9.5 -5.4833 | opp_overlap 1413265 CGCACCCGCACTAAA CCCGC TTCG GCGGG TTTTTTGTTGCGTGC TERM 1722 1413278 - 1413265 - T 79 -9.5 -3.73775 | opp_overlap 1413265 CGCACCCGCACTAAA CCCGC TTCG GCGGG TTTTTTGTTGCGTGC insB 1414203 - 1413700 - | IS1 ORF2 SFV_1361 1414531 - 1415130 + | unknown protein encoded within prophage SFV_1362 1415130 - 1415420 + | putative bacteriophage protein TERM 1723 1415598 - 1415579 - g 81 -4.3 -5.08824 | CTGGCATCCAAAAAA TTGACGA AAACAG CCGTCAA TGAAGCCCTGCGCAG SFV_1363 1415417 - 1415971 + | hypothetical protein TERM 1724 1416065 - 1416051 - f 74 -8.5 -3.95378 | opp_overlap 1416051 GGACACTTGAAAGAA CCCGC TTTAT GCGGG TTTTTTTGTGCCTGA TERM 1725 1416051 - 1416065 + F 100 -8.5 -5.64274 | opp_overlap 1416051 GGACACTTGAAAGAA CCCGC TTTAT GCGGG TTTTTTTGTGCCTGA SFV_1368 1416586 - 1418190 + | putative integrase SFV_1369 1419515 - 1419333 - | putative IS1 encoded protein insB 1419590 - 1420093 + | IS1 ORF2 SFV_1371 1420301 - 1421014 + | IS600 ORF2 SFV_1372 1421042 - 1421410 + | putative IS1 encoded protein SFV_1373 1421607 - 1421978 + | putative tail fiber assembly protein TERM 1726 1421960 - 1421978 + F 73 -7.4 -4.13995 | overlap 1421963 TGAATGGCCCGCCTC TCCGGAAG GTT CTTCCTGA TTTAATTTATCGCGA TERM 1727 1422096 - 1422077 - gf 100 -13.6 -3.5882 | CATATTATTCTGAAA TCCCGGGT AAAC ACCCGGGA AGTGGTGATGCACAC SFV_1374 1422002 - 1423270 + | putative tail fiber protein SFV_1375 1423221 - 1423844 + | hypothetical protein TERM 1728 1423851 - 1423883 + T 73 -10.6 -3.10012 | gap 1, opp_overlap 1423850 1423851 GTGGAATAACAGAAG CTGCGGCACG-TCGT ATGC AGGAACGTGCCGCGG TTGGCTGGTAAACTT sitD 1424902 - 1424045 - | Iron transport protein, inner membrane component sitC 1425582 - 1424899 - | Iron transport protein sitB 1426580 - 1425753 - | Iron transport protein, ATP-binding component sitA 1427494 - 1426580 - | Iron transport protein TERM 1729 1427530 - 1427545 + r 79 -7.6 -4.4009 | opp_overlap 1427530 1427539 CAAAATTAGAACAAA CATAGC AACG GCTATG TTTTATAGCATAACC TERM 1730 1427545 - 1427530 - R 79 -7.6 -4.4522 | opp_overlap 1427530, overlap 1427539 CAAAATTAGAACAAA CATAGC AACG GCTATG TTTTATAGCATAACC SFV_1380 1428550 - 1427945 - | putative integrase for prophage TERM 1731 1428364 - 1428377 + g 71 -3.1 -4.85782 | gap 1, overlap 1428364 1428365 GCAGTAATGTTACCG T-CCGG ATC CCGGCA TTTGTTTTTGGGGGA SFV_1381 1428759 - 1428550 - | putative IS1 encoded protein insB 1428834 - 1429337 + | IS1 ORF2 TERM 1732 1429428 - 1429418 - f 74 -5.4 -4.56597 | CCCCTCCTGTAAAAA TGAG TAT CTCA TGGACTACAATTTCA TERM 1733 1429724 - 1429697 - f 75 -9.9 -3.61398 | CCTGTCTGGCAACAA TCGCGCCCATC TATATT GATGGACACGA ACGATGAATTCCCAG TERM 1734 1430064 - 1430076 + G 73 -9.1 -3.62046 | opp_overlap 1430057 GCTAAGCAGGCATTA CAGCC TGG GGCTG TTGTTGCCCGGATCG SFV_1383 1429728 - 1430402 + | ISSfl4 ORF1 SFV_1384 1430399 - 1430746 + | ISSfl4 ORF2 TERM 1735 1430997 - 1430960 - g 70 -6.2 -4.1585 | overlap 1430961 1430965 TCATAAGCTTGAAAA TCAGATCCGACAGGCA GAAAAA CGACTGTCGGAACTGG AAAACCGGCTGAACA TERM 1736 1431019 - 1431002 - g 82 -9.1 -4.19238 | overlap 1431015 GTCGGAACTGGAAAA CCGGCTG AACA CAGCCAG AAATCTTCTGGAAGA SFV_1385 1430766 - 1432367 + | ISSfl4 ORF3 TERM 1737 1432462 - 1432474 + F 72 -9.1 -3.62046 | GCTAAGCAGGCGTTA CAGCC TGG GGCTG TTGTTGCCCGGATCG TERM 1738 1432641 - 1432655 + G 79 -4.2 -5.06816 | ATGCTCATGTCTCTG GCGCAA TGC TTGGGC TTTTTATTCGCACAT SFV_1386 1432626 - 1433249 + | putative tail component of prophage TERM 1739 1433364 - 1433387 + T 100 -13.8 -4.58395 | opp_overlap 1433361 1433360, overlap 1433365 AAACGGATGAATCCG GGGAGGCCCG GGGG CGGGCCTCCG TTTTTCCGGAGTCAG TERM 1740 1433365 - 1433386 + T 100 -17.3 -3.34716 | opp_overlap 1433361 1433360, overlap 1433364 AACGGATGAATCCGG GGAGGCCCG GGGG CGGGCCTCC GTTTTTCCGGAGTCA ipaH_2 1435084 - 1433429 - | invasion plasmid antigen TERM 1741 1435396 - 1435364 - H 87 -10.6 -4.08919 | AAATCGTAAAGGAAA CCGTAGCACGTCGT ATGCA AGAACGTGCCACGG CTGGCTGATGGATGT SFV_1389 1436336 - 1436638 + | IS600 ORF1 SFV_1390 1436779 - 1437492 + | IS600 ORF2 SFV_1391 1438024 - 1437749 - | hypothetical protein TERM 1742 1437827 - 1437816 - G 72 -7.2 -4.21933 | opp_overlap 1437815 TCAATCGGAAAACAA CCGC CATG GCGG ATCCGTTGATCGCTC TERM 1743 1438033 - 1438017 - G 74 -7.9 -4.12857 | opp_overlap 1438014 1438017 AACCAGGACAAATAA CCCGCCA TGC CGACGGG TTCTTTTTGGATCAG TERM 1744 1438017 - 1438033 + g 70 -5 -4.44608 | opp_overlap 1438017, overlap 1438014 AACCAGGACAAATAA CCCGCC ATGCC GACGGG TTCTTTTTGGATCAG SFV_1392 1438281 - 1438045 - | hypothetical protein TERM 1745 1438267 - 1438256 - G 70 -7.2 -4.13767 | TCGTCGATTTCAAAA GCGC CTAT GCGC ACACTGGTTTTCATC yebU 1439844 - 1438399 - | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 1746 1439193 - 1439203 + g 71 -2.4 -5.02074 | TTTCCTGATTGCTTT CGGG TGA CCAG TTTTTTAGCGCATCG TERM 1747 1439766 - 1439756 - G 70 -4 -4.63932 | CAGGCGGCAAGAAAA TCAT CAA ATGA GAGCGTCGAAGGCAT TERM 1748 1439911 - 1439884 - R 79 -11.2 -3.41602 | opp_overlap 1439878, overlap 1439885 CGCAGTTTAGCATAA GCGCTCCGGCGC AGGC ACGCCGGAGCAG TGGGCATTATTTGGG TERM 1749 1439910 - 1439885 - R 86 -14.7 -2.64747 | opp_overlap 1439878, overlap 1439884 GCAGTTTAGCATAAG CGCTCCGGCGC AGGC ACGCCGGAGCA GTGGGCATTATTTGG SFV_1394 1441840 - 1439918 - | hypothetical protein TERM 1750 1441379 - 1441399 + g 70 -4.6 -4.56597 | opp_overlap 1441379 GGTCAGTGTCAGAAC GTCCGGCT CTTGC AGCAGGGC TTTTTCGCCCGGCAC SFV_1395 1442557 - 1441886 - | putative paraquat-inducible protein SFV_1396 1443803 - 1442520 - | hypothetical protein TERM 1751 1442718 - 1442700 - GH 79 -8.8 -4.08111 | overlap 1442702 TAAAGATATGACAAA CAGGTCGA GCA TCGACCAG CGTCCAATCCAGGTC TERM 1752 1442716 - 1442702 - GH 77 -10 -3.61777 | overlap 1442700 AAGATATGACAAACA GGTCGA GCA TCGACC AGCGTCCAATCCAGG TERM 1753 1443451 - 1443441 - GH 74 -3.2 -4.94222 | AATAACGCAGAAAAA GACC ATT GATC CCGTTATCGCATCGC TERM 1754 1443564 - 1443542 - GH 71 -9.8 -3.14125 | overlap 1443540 GCCAGATATGTAACA GCGGTTCGCC CCA GGCAAACGGC ATAAGCAACAGCATG TERM 1755 1443615 - 1443631 + gH 70 -3.6 -4.65895 | overlap 1443616 GCGCGTTAGCGACCA GTCGCG CCCGT CGCGAA TTTTTGCCTGACAGC TERM 1756 1443861 - 1443885 + H 72 -6.6 -4.26903 | opp_overlap 1443872 TGATGGGAATGATCT TGAGCATTAA CGCAT TTAATGCTTA TTTTAATAGGCTGGC SFV_1397 1443933 - 1444430 + | hypothetical protein TERM 1757 1444935 - 1444923 - g 70 -6.9 -4.06419 | overlap 1444926 GCTGGTGAGAAAGAA GACGC ACC GCGCC GCGAACGCAAGCCAC proQ 1444527 - 1445225 + | putative solute/DNA competence effector TERM 1758 1445597 - 1445612 + G 77 -8.2 -4.14392 | opp_overlap 1445596 1445595, overlap 1445598 ACGATCTCTACAATC TGGCGC AAAA GCGCCG TTTTGAACGTTACCA TERM 1759 1445670 - 1445652 - g 74 -8.1 -4.13767 | GTCGGTACTGGAAAA GCCGATG GATTT CACCGGC AACGACACTTATAAC prc 1445245 - 1447293 + | carboxy-terminal protease TERM 1760 1447300 - 1447323 + F 100 -14 -5.00616 | opp_overlap 1447300 GTCAAGTAATATCAA TCAGGCACAA GAAA TTGTGCCTGA TTTTTTAACAGCGGC TERM 1761 1447323 - 1447300 - f 90 -14 -3.42147 | opp_overlap 1447300 GTCAAGTAATATCAA TCAGGCACAA GAAA TTGTGCCTGA TTTTTTAACAGCGGC TERM 1762 1447445 - 1447455 + F 80 -6.8 -4.65916 | opp_overlap 1447431, overlap 1447421 1447420 1447433 ATACGATGTGGGTAT CGCA TAT TGCG TTTTGTTAAACTGAG htpX 1447485 - 1448366 + | heat shock protein HtpX TERM 1763 1448412 - 1448381 - T 76 -11.7 -2.74026 | opp_overlap 1448387, overlap 1448387 ATATGAAGTAAATAC TAAAAAGCGCGTC CTGATC GACGCGCTTTTTT TATGCCCTGGCTCGT TERM 1764 1448406 - 1448387 - T 100 -10.7 -4.946 | opp_overlap 1448387, overlap 1448381 AGTAAATACTAAAAA GCGCGTC CTGATC GACGCGC TTTTTTTATGCCCTG TERM 1765 1448387 - 1448406 + T 100 -10.7 -5.626 | opp_overlap 1448387 1448381 AGTAAATACTAAAAA GCGCGTC CTGATC GACGCGC TTTTTTTATGCCCTG SFV_1401 1449896 - 1448412 - | putative transport protein SFV_1402 1449962 - 1450753 + | putative regulator TERM 1766 1450763 - 1450793 + F 77 -6.9 -4.44046 | opp_overlap 1450763 1450766 TTCTGATGAGAGTAA GAACCTGTCGG AATATCAAA CAGACAGGTTC TTTATTTAGCATGAG SFV_1403 1451294 - 1451437 + | hypothetical protein SFV_1404 1451512 - 1451799 + | hypothetical protein TERM 1767 1451813 - 1451844 + F 71 -9.6 -3.25729 | gap 1, opp_overlap 1451821 AATCCTTCCTCAATC TTGAGTAACCCCGTC GTT GAAGG-GTTACTCAA TTCATCCTGATTATA cspC 1452625 - 1452834 + | cold shock-like protein CspC TERM 1768 1452811 - 1452827 + F 70 -9.5 -2.94747 | opp_overlap 1452802 CAGAAAGGTCCGGCA GCTGTTA ACG TAACAGC TATCTGATCGAATCC TERM 1769 1452901 - 1452883 - f 71 -7.4 -3.86822 | opp_overlap 1452883 CAATCTCGCTATAAA GCCTCG TCGAATG CGAGGC TTTTTACTATGCTTT TERM 1770 1452883 - 1452901 + F 88 -8.1 -4.85177 | opp_overlap 1452883 CAATCTCGCTATAAA GCCTCGT CGAAT GCGAGGC TTTTTACTATGCTTT rrmA 1453000 - 1453809 + | 23S rRNA methyltransferase A SFV_1407 1454615 - 1453806 - | hypothetical protein TERM 1771 1454062 - 1454078 + g 73 -11.5 -2.55437 | opp_overlap 1454062, overlap 1454061 1454059 ACCAGTAGCCAGAAA CCGTGCC GAC GGCGCGG CTCTTCATCTTCATC TERM 1772 1454078 - 1454062 - G 78 -9.3 -3.93963 | opp_overlap 1454062 1454061 1454059 ACCAGTAGCCAGAAA CCGTGCC GAC GGCGCGG CTCTTCATCTTCATC TERM 1773 1454791 - 1454740 - R 73 -9.8 -3.42364 | gap 1, opp_overlap 1454738 1454742, overlap 1454738 AGGGAAGAGATAATA TAGCCTAAGCTATGTCTGAT-TATT AAA AATACACTAAACATAGCTTTGGCTA AATTCATAAGTTATT insB 1455338 - 1454835 - | IS1 ORF2 SFV_1409 1456037 - 1455561 - | hypothetical protein TERM 1774 1456057 - 1456076 + r 71 -10.6 -2.62396 | opp_overlap 1456058 CCTCCAGATAAAAAA ACGGGGCC AAAA GGCCCCGG TAGTGTACGACAGTC TERM 1775 1456075 - 1456058 - R 100 -14.1 -5.71712 | opp_overlap 1456057 CTCCAGATAAAAAAA CGGGGCC AAAA GGCCCCG GTAGTGTACGACAGT manZ 1456943 - 1456092 - | mannose-specific PTS system protein IID TERM 1776 1456893 - 1456907 + g 82 -2.8 -5.28778 | opp_overlap 1456894, overlap 1456894 GAATACGCCACGAAT ATCACT TTG AGTGAG TTTTTTCTCGGTGGT manY 1457756 - 1456956 - | PTS enzyme IIC, mannose-specific manX 1458790 - 1457819 - | PTS enzyme IIAB TERM 1777 1458357 - 1458382 + g 100 -12.5 -4.58685 | GGAGCCGCTTTTGGT GCTGCGGCAGC GGGT GCTGGCGCGGC TTTTTCAACCGGTTT TERM 1778 1459035 - 1459058 + H 72 -8.2 -3.67588 | opp_overlap 1459039 AAGGTAAATCTTTGC CAAATCAGAG GCGT CTCTGATATG TTTAACTCCCGTTTA TERM 1779 1460417 - 1460428 + G 72 -5.8 -4.35483 | overlap 1460394 GGCGTGCTGCGTCGC GCTC GCGG GAGC TTTGTTATCGTGACC yoaE 1459253 - 1460803 + | putative transport protein TERM 1780 1460848 - 1460816 - T 71 -9.9 -3.18199 | opp_overlap 1460824 1460844, overlap 1460805 1460804 TAAGCGTTAACGTAA CGACATAATGGGCGT GAT ATGTCCATTATGCCG GGCGGGCGGCGGTTG SFV_1414 1462405 - 1460807 - | hypothetical protein TERM 1781 1460844 - 1460878 + g 100 -14.9 -3.54424 | opp_overlap 1460816 GTGATATGTCCATTA TGCCGGGCGGGCGGC GGTTG GCTGCCCGCCAGCCA TTTGGGAAAATCACG TERM 1782 1462526 - 1462500 - R 95 -13 -3.88583 | overlap 1462501 GAAAGCGGGTATAAA TTCGCCCATCCG TTG CAGATGGGCGAG TAAGAAGTATTAGTC TERM 1783 1462525 - 1462501 - R 100 -16.5 -2.92668 | overlap 1462500 AAAGCGGGTATAAAT TCGCCCATCCG TTG CAGATGGGCGA GTAAGAAGTATTAGT sdaA 1463882 - 1462536 - | L-serine deaminase yeaB 1464662 - 1464084 - | hypothetical protein pabB 1466027 - 1464666 - | para-aminobenzoate synthase component I TERM 1784 1464957 - 1464946 - G 72 -5.8 -4.3129 | opp_overlap 1464946, overlap 1464947 GAGCCACCAGGAAAA GCTG CGCG CAGC AGATCGCTGGCGTGT TERM 1785 1465262 - 1465251 - G 70 -3.6 -4.63952 | ATCACAAAGAATAAA CCGC TCTG GCGA AAGGCTTAAAATTGC TERM 1786 1465313 - 1465300 - G 83 -5.2 -5.1615 | TCAAGACGTAAAAAA GCGC TAAATG GCGC GCGGTTGGCCTGATT TERM 1787 1465921 - 1465893 - G 72 -8.1 -3.98159 | overlap 1465894 GACCACAATATCAAA GCGGCTATACGGA TGA TCGGCATAGCCGG AGTGTAAAAGCATCG TERM 1788 1465920 - 1465894 - G 75 -11.6 -2.98173 | overlap 1465893 ACCACAATATCAAAG CGGCTATACGGA TGA TCGGCATAGCCG GAGTGTAAAAGCATC SFV_1418 1466101 - 1466280 + | hypothetical protein TERM 1789 1466370 - 1466340 - T 100 -11.3 -4.84359 | TGATTGTGAGAAAAA GGACGCTTTTTAT ATGTG ATTAAAAGCGTCC TGACCCATTTATGCT SFV_1419 1466759 - 1466400 - | hypothetical protein TERM 1790 1467043 - 1467069 + r 71 -9.5 -3.25668 | overlap 1467042 GTAATATCTTATTCT CTGGTCGATTT ATGTA AAACCGACCAG TATTATCGATAAATT SFV_1420 1467507 - 1467115 - | hypothetical protein TERM 1791 1468412 - 1468432 + G 72 -6.1 -4.3467 | AAAGTGCGCTGATCG TCTTGCCCA GAG TGCGCAGGA TTTTCGTCTGCAACT TERM 1792 1468979 - 1468990 + G 72 -4.4 -4.64846 | opp_overlap 1468979 GATCATCGAAGCTAA CAAC GGTC GTTG TTTTATGCTTTGTAC SFV_1421 1467591 - 1469501 + | putative enzyme yeaZ 1469559 - 1470254 + | hypothetical protein SFV_1423 1470294 - 1470875 + | putative outer membrane protein TERM 1793 1470897 - 1470921 + F 86 -14.4 -2.66106 | opp_overlap 1470877 1470897, overlap 1470901 GTTTTTAAAGAAAAA GAAACAGCGG CTGGT CCGCTGTTTC TGCATTCTTACGGTA TERM 1794 1470921 - 1470897 - f 100 -14.4 -5.27335 | opp_overlap 1470897 1470901, overlap 1470877 GTTTTTAAAGAAAAA GAAACAGCGG CTGGT CCGCTGTTTC TGCATTCTTACGGTA TERM 1795 1470901 - 1470917 + F 79 -9.4 -4.02253 | opp_overlap 1470877 1470897, overlap 1470897 TTAAAGAAAAAGAAA CAGCGG CTGGT CCGCTG TTTCTGCATTCTTAC TERM 1796 1472035 - 1472047 + G 74 -7.7 -4.04318 | opp_overlap 1472034 1472031, overlap 1472039 TGAACAATAAAGAGT TCCAG CAG CTGGA TTTCTCCTGTCTGCA TERM 1797 1472612 - 1472623 + G 70 -4.4 -4.57569 | opp_overlap 1472612 ATCGCTTACCGAAGA GTCA CTGG TGAC TTTTTGCCGCCGTCA fadD 1471047 - 1472765 + | long-chain-fatty-acid--CoA ligase TERM 1798 1472786 - 1472802 + F 100 -10.8 -5.75342 | opp_overlap 1472777, overlap 1472775 AAGTCAGTCGTCAGA CGCCGG TTAAT CCGGCG TTTTTTTTGACGCCC rnd 1472835 - 1473962 + | ribonuclease D TERM 1799 1474015 - 1473965 - T 95 -12.5 -4.26344 | opp_overlap 1473974 ATATCCGCAGTAAAA TCTTCCGAAGCCGGACTGGGCGC GCTCA GCGCCACATCCGGCTTTGGCAAA CTACAAATCCAACAC TERM 1800 1473974 - 1474006 + T 86 -12.1 -3.54424 | opp_overlap 1473965 GTAAAATCTTCCGAA GCCGGACTG-GGCGC GCTCA GCGCCACA-TCCGGC TTTGGCAAACTACAA yeaX 1474981 - 1474016 - | putative diogenase beta subunit TERM 1801 1474737 - 1474727 - G 88 -8.2 -4.65895 | opp_overlap 1474734 1474734 CTGCTGATGCAAAAA GCGG GAA CCGC CGCGCGAGTTTTCTT TERM 1802 1475016 - 1475001 - R 73 -4.6 -4.7373 | opp_overlap 1475006 1475007, overlap 1475004 1475005 GTACTCCATCAAAAA TCAGCC CAGC GGCGGA AAATACCGCCGCCGA SFV_1427 1475630 - 1475037 - | putative dioxygenase alpha subunit SFV_1428 1475669 - 1475971 + | IS600 ORF1 SFV_1429 1476112 - 1476825 + | IS600 ORF2 SFV_1430 1477217 - 1476822 - | hypothetical protein SFV_1431 1477668 - 1477489 - | putative IS1 encoded protein insB 1477743 - 1478246 + | IS1 ORF2 yeaF 1478670 - 1479416 + | hypothetical protein TERM 1803 1479468 - 1479452 - f 100 -13.7 -4.82901 | opp_overlap 1479452 TTTTGTGCATAAAAA CAGGGCG TCA CGCCCTG TTTTGCATTACGGTG TERM 1804 1479452 - 1479468 + F 100 -13.7 -4.2803 | opp_overlap 1479452 TTTTGTGCATAAAAA CAGGGCG TCA CGCCCTG TTTTGCATTACGGTG SFV_1434 1479506 - 1480267 + | putative aldehyde reductase yeaD 1481202 - 1480318 - | hypothetical protein TERM 1805 1481259 - 1481242 - R 100 -11.3 -5.82316 | opp_overlap 1481242 ATCAGGTAAAAAAAA GAGCGAC CGAA GTCGCTC TTTTTAGATCACAGT TERM 1806 1481242 - 1481259 + r 95 -11.3 -4.66163 | opp_overlap 1481242 ATCAGGTAAAAAAAA GAGCGAC CGAA GTCGCTC TTTTTAGATCACAGT gapA 1482281 - 1481286 - | glyceraldehyde-3-phosphate dehydrogenase TERM 1807 1482353 - 1482337 - H 72 -2.9 -5.09245 | GTAAAATTACAAAAA CCTTACG CAG CGTCAAG CGGAATCGTGTCAAT yeaA 1482624 - 1483037 + | methionine sulfoxide reductase B SFV_1438 1483034 - 1483351 + | hypothetical protein TERM 1808 1483840 - 1483823 - g 77 -8.3 -4.08485 | GTGACTGAAATTAAA GCCGCGG CAAT CTGCGGC GCAGACATGAAGCAC SFV_1439 1483721 - 1484797 + | putative oxidoreductase TERM 1809 1484852 - 1484842 - g 71 -2.4 -4.90002 | GAACAGATAACAAAA CCGC ATT GTGG TGCACGGCTGGATCG TERM 1810 1485517 - 1485505 - g 78 -9.1 -3.9093 | CGGAGTATAGAAGAA GGCGT CAT ACGCC AGACGGGTAAACCTT SFV_1440 1484824 - 1486053 + | putative transport protein SFV_1442 1487272 - 1488108 + | putative aldolase SFV_1443 1488113 - 1489060 + | putative kinase TERM 1811 1489306 - 1489292 - g 86 -4.2 -5.41143 | CAGGCGTTAAAAAAA CTGCCC CGT GAACAG GTTGTAGTAGAAACC TERM 1812 1489421 - 1489393 - g 78 -5.2 -4.84359 | GCAGTTGTATAAAAA CCTTTCCCCGGA ATCTA TCCGCGAAGAGG TAGAAGCCAGCTTGC TERM 1813 1489478 - 1489495 + G 74 -3.3 -5.0133 | ATCTATATGACGCAC TGGCAGT CGGT GCCGCCA TTTTTTACGCCGATA TERM 1814 1489846 - 1489856 + G 70 -6.8 -4.03093 | opp_overlap 1489846 TGATATGCTTGAACA GTGG CAG CCAC TTTGTGCTCGTTATC SFV_1444 1489070 - 1490050 + | hypothetical protein SFV_1445 1490223 - 1490945 + | putative DEOR-type transcriptional regulator TERM 1815 1491028 - 1491007 - T 79 -10.2 -3.60538 | opp_overlap 1491006 1491007, overlap 1491005 AAATGATGATAAAGA TGCGGCAA GTGAAT TTGCCGCA ATTGCTACCTTTTAT TERM 1816 1491007 - 1491028 + T 73 -10.9 -2.56591 | opp_overlap 1491007 1491005, overlap 1491006 AAATGATGATAAAGA TGCGGCAAG TGAA TTTGCCGCA ATTGCTACCTTTTAT TERM 1817 1491552 - 1491574 + T 86 -4.8 -5.63103 | CCCATGCTGTCTGCG GCGATAGGCG TGG TGGTTATCGC TTTTTTTAGTTGGCG SFV_1447 1492017 - 1491826 - | putative IS1 encoded protein insB 1492092 - 1492595 + | IS1 ORF2 ydjB 1493932 - 1493291 - | nicotinamidase/pyrazinamidase ansA 1494911 - 1493943 - | cytoplasmic asparaginase I TERM 1818 1494180 - 1494206 + g 73 -3.7 -4.77173 | overlap 1494182 AATACCGCGATCGCT GGCTTCTTGTA ATTCC TGCAGGAAGGC TTTGTTTTGTGGCGC TERM 1819 1495116 - 1495087 - R 100 -9.4 -5.08824 | gap 1, overlap 1495090 1495091 CGTCGAGGTAAAAAA TAATGTGGCCGAC GATCT GTCGGCCAC-TCA GTACAAGACTTAACG TERM 1820 1495114 - 1495090 - R 95 -11.4 -4.64763 | overlap 1495087 1495091 CGAGGTAAAAAATAA TGTGGCCGAC GATCT GTCGGCCACT CAGTACAAGACTTAA TERM 1821 1495113 - 1495091 - R 93 -14.9 -3.37773 | overlap 1495090 1495087 GAGGTAAAAAATAAT GTGGCCGAC GATCT GTCGGCCAC TCAGTACAAGACTTA sppA 1496982 - 1495126 - | protease 4 TERM 1822 1496972 - 1496953 - G 77 -2.8 -5.08824 | overlap 1496955 CGTCCATTTAAAAAA TCCGGCAA TAAA TCGCCAAA GGGTTCGCATGTATT ydjA 1497161 - 1497694 + | hypothetical protein selD 1497811 - 1498854 + | selenophosphate synthetase TERM 1823 1499282 - 1499233 - gf 77 -8.5 -4.13945 | gap 1, opp_overlap 1499239 1499278, overlap 1499234 ACTGGCACCGGAAAA GCGCCAGCAGGTGCAGCGTTGCTT GAT AAACGAC-CTGAACCCGCAGGCGG TTGAGCGGGCGATCG TERM 1824 1499281 - 1499234 - gf 78 -12 -3.08046 | gap 1, opp_overlap 1499239 1499278, overlap 1499233 CTGGCACCGGAAAAG CGCCAGCAGGTGCAGCGTTGCTT GAT AAACGAC-CTGAACCCGCAGGCG GTTGAGCGGGCGATC TERM 1825 1500002 - 1499989 - gf 74 -3.1 -4.91109 | gap 1 TTGGGATGACAAAAA GGT-CG ATG CGCACC ACGCCATCATCCCGA topB 1498802 - 1500820 + | DNA topoisomerase III TERM 1826 1500861 - 1500891 + F 100 -7 -5.81412 | opp_overlap 1500861 AGTCATATTCTGAAA TATCCAGCGGAT CAAGAAA ATTCGTTGGATA TTTTTTTTGCATGGA TERM 1827 1500971 - 1500957 - g 79 -3.6 -5.16237 | AATGTGATGAAAAAA GTTTTA TTG CAAAAC CATCCTGGGAGCGAG SFV_1455 1500948 - 1501646 + | hypothetical protein insB 1501874 - 1502377 + | IS1 ORF2 gdhA 1504225 - 1502882 - | glutamate dehydrogenase TERM 1828 1504150 - 1504178 + g 70 -6.7 -4.12902 | gap 1 CTTCACGAACGGCTT GCGCGAACTCGG TTTGAT TCGGGT-CGCGC TTTTGGACATGGTTG TERM 1829 1504585 - 1504608 + G 93 -12.4 -3.87815 | overlap 1504575 CAGGCGGGCAGTCAG CGCAGCCCTG TACT CAGTGCTGCG TTTATCAGGATCAAA SFV_1458 1504461 - 1504733 + | hypothetical protein SFV_1459 1505106 - 1504699 - | pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase TERM 1830 1505347 - 1505364 + G 75 -5.5 -4.63218 | CGCTGGGCTGGTATC TGGCGGC GCTA GTCGTCA TTTTGTTGAACAGGC TERM 1831 1505721 - 1505747 + G 95 -15.2 -2.75803 | GTGTGGAGTGGGTAT CTGACGCTGAAG TCG CTCCAGCGTCAG TAATTGCAATGTTAT SFV_1460 1505193 - 1505750 + | putative cytochrome oxidase TERM 1832 1505786 - 1505801 + T 76 -4.6 -5.0133 | overlap 1505787 GCCCGGGCCGCGTTC ACCGGT TGCA ACCGGA TTTTTTGGAGCGCTG TERM 1833 1505807 - 1505821 + T 71 -10 -3.14132 | TGCAACCGGATTTTT TGGAGC GCT GCTCCA TTCGTACCAGCCGCC TERM 1834 1506400 - 1506415 + T 71 -6.8 -4.08767 | opp_overlap 1506388 1506391 GAATGACCGTGGTGT CATGGC GAAT GCCGTG TTTTGCCAGCATCGC TERM 1835 1506632 - 1506652 + T 73 -4.5 -4.82901 | opp_overlap 1506634, overlap 1506634 CCATTGCGGATAAAC CAGCTGCTC AAA GTGCGGCAG TTTTTGTAGACGGGA SFV_1462 1507786 - 1507133 - | putative ATP-binding component of a transport system TERM 1836 1508582 - 1508593 + r 74 -7.2 -4.22748 | CATCAGCAGCAGACT GGCG AGTG CGCC TTTCGTTTGTTGATC TERM 1837 1508816 - 1508830 + r 74 -5.6 -4.67353 | opp_overlap 1508815, overlap 1508818 ATCCAGCACAATGAC CTGCTG CAA CAGCCG TTTTTCGCTCAATAC SFV_1464 1509731 - 1509276 - | hypothetical protein TERM 1838 1509393 - 1509407 + g 81 -7.1 -4.59773 | TTGCAATATTTCGCG CTGCC CGTCA GGCAG TTTTTGCGGATCGAG TERM 1839 1509616 - 1509604 - G 71 -9.1 -3.53012 | opp_overlap 1509595 1509604 CTGCTTGCCGGCAAA TCGCC GCT GGCGA TTTTTTGCTGCGCAT TERM 1840 1509604 - 1509616 + g 95 -9.1 -5.14965 | opp_overlap 1509604, overlap 1509595 CTGCTTGCCGGCAAA TCGCC GCT GGCGA TTTTTTGCTGCGCAT TERM 1841 1510047 - 1510000 - H 72 -4.9 -4.65895 | gap 2, opp_overlap 1510035 GTCGGCACTGAAAAA TCTTCCCGCACCGGCAGCTGTGT GTCG ACATAGC-GCCAGTT-GGGCAGA GTCTCCGCCCAGCCC TERM 1842 1510141 - 1510172 + H 100 -13.9 -4.4017 | opp_overlap 1510144 CCAGTGGCTGTGTAA GAATCCGGAAACG CTCACT TGTTTCCGGATTC TTTTATGCACATTGG TERM 1843 1510169 - 1510144 - H 72 -9.1 -3.61398 | opp_overlap 1510141 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTCTTTTATGCACAT SFV_1465 1510159 - 1511505 + | IS4 orf TERM 1844 1511516 - 1511487 - T 89 -9.3 -4.59109 | opp_overlap 1511484 1511481 1511488 1511489, overlap 1511489 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACTCTTTTAAGGTG TERM 1845 1511488 - 1511515 + T 88 -12.8 -3.54181 | opp_overlap 1511487 1511489, overlap 1511484 1511481 1511489 ACAGCCCCGAAAAAG AGCCAGTCAGTT GCTT AACTGACTGGCA TTACTCTTTTAAGGT TERM 1846 1511489 - 1511514 + T 90 -16.3 -2.71785 | opp_overlap 1511487 1511489, overlap 1511488 1511484 1511481 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTCTTTTAAGG TERM 1847 1511514 - 1511489 - T 100 -16.3 -3.90762 | opp_overlap 1511489 1511488 1511484 1511481, overlap 1511487 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTCTTTTAAGG SFV_1466 1511800 - 1511516 - | hypothetical protein ynjA 1512403 - 1511855 - | hypothetical protein ydjZ 1513107 - 1512403 - | hypothetical protein TERM 1848 1512789 - 1512772 - G 88 -5.5 -5.24129 | gap 1, overlap 1512775 1512777 TCTGGCGATAAAAAA GCACAGCG CCG CGCCG-GC CATCGAACTGGTCCA TERM 1849 1513036 - 1513006 - G 86 -11.1 -3.91897 | overlap 1513026 GCTGCGATTGATAAA CTCATGGACGCCG GGAAG CAGCGCCCATGCG AGCAGCATAGCGAAC ydjY 1513802 - 1513125 - | hypothetical protein TERM 1850 1513281 - 1513291 + g 71 -2.4 -4.92791 | GCTATCCAGACACAC CAGG CAA CCCG TTTTCTTCTCTTCTG ydjX 1514517 - 1513807 - | hypothetical protein xthA 1515490 - 1514684 - | exonuclease III TERM 1851 1515268 - 1515254 - G 73 -9.2 -3.57144 | opp_overlap 1515257 1515259 GTCGTCACCGGGAAA GCCGCG ACG CACGGC AATCGGCGTCTCTTT TERM 1852 1515632 - 1515650 + H 74 -11 -2.92792 | overlap 1515629 CGCTTTTGGTGCGCG CTGCGTCA GAA TGGCGCAG TAATTTCCAGTAAAT TERM 1853 1516666 - 1516721 + H 79 -10.3 -3.61398 | gap 1, opp_overlap 1516684 1516692, overlap 1516656 TGCACTACGGCGTGA CGC-CCGATCTGTTAACCACCGCCAA AGCGC TGGGCGGCGGTTTCCCGGTCGGTGCG TTGTTGGCAACCGAA TERM 1854 1517509 - 1517527 + G 79 -10.2 -3.85698 | opp_overlap 1517502 CGATCACACCGGCAG CAGCGAGC TGT GCACGCTG TTTCTCGACCCGGAC TERM 1855 1517864 - 1517847 - g 77 -9.8 -3.5944 | AGGTACATCCGCAAA CCGCGC CTGCCC GCGCGG TGCTGGAGAAAGAAG TERM 1856 1518053 - 1518090 + G 70 -6.1 -4.19735 | gap 1, opp_overlap 1518044 AATTATCACCATTTC CGCGTGG-TGCTGGCGCG TAC CGATCCGGCAACCGAGCG TTTGATTTTAACCGC SFV_1473 1517153 - 1518187 + | arginine succinyltransferase TERM 1857 1518577 - 1518603 + G 100 -14.4 -3.56821 | opp_overlap 1518551 GCGGCGAGCCTGCGA CATCGCCCGCAC GGC GTGCTGGCGGTG TTTGGGCCGTATAAT astD 1518184 - 1519662 + | succinylglutamic semialdehyde dehydrogenase TERM 1858 1520097 - 1520112 + F 72 -4.7 -4.56597 | opp_overlap 1520097 GCGCCCGTCACTGAA TCGCT GTTAAA AGCGA TTTTTAAGGACGAAG TERM 1859 1520797 - 1520777 - f 71 -6.8 -4.06864 | TTGACAGAAGAAGAA CGCCGG GCGGTGAAT CCGGCG GTGATGATGAACGAT TERM 1860 1521037 - 1521024 - g 81 -4.5 -5.055 | opp_overlap 1521013, overlap 1521025 TTAACGGGTAAAAAA CCGGT TATC ACCGA GCGAGAAATCAACGG ydjS 1520985 - 1521953 + | succinylglutamate desuccinylase TERM 1861 1521995 - 1521946 - f 74 -3.5 -5.03145 | opp_overlap 1521949 1521958, overlap 1521949 1521954 1521956 1521957 TAATGCTCGAAAAAA TAAGCTAATACTTACCCGCAGAA ATCA TTCTGCGGGTATTAAGTTGCTTT CTTATAAATTAATAC TERM 1862 1521992 - 1521949 - f 72 -5.2 -4.61482 | opp_overlap 1521949 1521958, overlap 1521946 1521954 1521956 1521957 TGCTCGAAAAAATAA GCTAATACTTACCCGCAGAA ATCA TTCTGCGGGTATTAAGTTGC TTTCTTATAAATTAA TERM 1863 1521984 - 1521957 - f 78 -12.8 -2.53642 | opp_overlap 1521949 1521958, overlap 1521956 1521954 1521949 1521946 AAAATAAGCTAATAC TTACCCGCAGAA ATCA TTCTGCGGGTAT TAAGTTGCTTTCTTA TERM 1864 1521958 - 1521983 + F 100 -16.3 -3.2827 | opp_overlap 1521957 1521956 1521954 1521949 1521946, overlap 1521949 AAATAAGCTAATACT TACCCGCAGAA ATCA TTCTGCGGGTA TTAAGTTGCTTTCTT spy 1522283 - 1522768 + | periplasmic protein TERM 1865 1522844 - 1522790 - f 86 -12.1 -3.52779 | opp_overlap 1522792, overlap 1522792 AGCCAAAAAACTTAA GACCGCCGGTCTTGTCCACTACCTT GCAGT AATGCGGTGGACAGGATCGGCGGTT TTCTTTTCTCTTCTC TERM 1866 1522842 - 1522792 - f 93 -14.7 -3.3244 | opp_overlap 1522792, overlap 1522790 CCAAAAAACTTAAGA CCGCCGGTCTTGTCCACTACCTT GCAGT AATGCGGTGGACAGGATCGGCGG TTTTCTTTTCTCTTC TERM 1867 1522792 - 1522842 + F 100 -19.8 -5.26907 | opp_overlap 1522792 1522790 CCAAAAAACTTAAGA CCGCCGGTCTTGTCCACTACCTTG CAG TAATGCGGTGGACAGGATCGGCGG TTTTCTTTTCTCTTC SFV_1478 1522908 - 1523546 + | hypothetical protein SFV_1479 1524393 - 1523506 - | nucleotide excision repair endonuclease TERM 1868 1524053 - 1524069 + g 70 -6.5 -4.15044 | AGGGCACAGAGCTGG CGATTGC GGC GCAACCG TTTATTAAACAGCGG TERM 1869 1524551 - 1524592 + r 84 -8.7 -4.57569 | opp_overlap 1524557 1524558, overlap 1524554 1524558 ATAGTTTTGTAGGTC GAATAAGGCGTTCACGCCG CATC CGGCGTGAACAAATTACTC TTTTTCGCACAATCC TERM 1870 1524585 - 1524558 - R 77 -12 -2.77895 | opp_overlap 1524554 1524551 1524558, overlap 1524557 TGTAGGTCGAATAAG GCGTTCACGCCG CATC CGGCGTGAACAA ATTACTCTTTTTCGC nadE 1525450 - 1524623 - | NAD synthetase TERM 1871 1525412 - 1525424 + g 72 -4.7 -4.69324 | overlap 1525413 ATTAATCTGCGGTTT TGCGC CCA GCGCC TTTATTATTTGTTGT osmE 1525652 - 1525990 + | DNA-binding transcriptional activator OsmE TERM 1872 1526025 - 1526040 + F 100 -7.5 -5.78622 | opp_overlap 1526025 GAGTAACAACGGAAA CCGGC CATTGC GCCGG TTTTTTTTGGCCTGA TERM 1873 1526040 - 1526025 - f 71 -7.5 -3.8646 | opp_overlap 1526025 GAGTAACAACGGAAA CCGGC CATTGC GCCGG TTTTTTTTGGCCTGA celA 1526289 - 1526609 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB celB 1526694 - 1528043 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC celC 1527997 - 1528452 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA TERM 1874 1528569 - 1528557 - f 71 -3.4 -4.79352 | TTATCTATAACAAAA CTGA GAGTA TCAG CGGACTGCATCAGCA celF 1529407 - 1530759 + | cryptic phospho-beta-glucosidase; cryptic ydjC 1530772 - 1531530 + | hypothetical protein TERM 1875 1531535 - 1531575 + T 72 -9.2 -3.5394 | gap 2, opp_overlap 1531535 1531536, overlap 1531537 1531543 TTGATGTGTAAGTAA GGTGG-TAAGGTCAC-TCCC CAG GGGACGTGACCTTATCCATA TTTACGCCGGAATTT TERM 1876 1531574 - 1531536 - T 71 -10.5 -2.60723 | gap 2, opp_overlap 1531535 1531537 1531543, overlap 1531535 TGATGTGTAAGTAAG GTGG-TAAGGTCAC-TCCC CAG GGGACGTGACCTTATCCAT ATTTACGCCGGAATT TERM 1877 1531537 - 1531573 + T 90 -14 -3.34517 | gap 2, opp_overlap 1531536 1531535, overlap 1531535 1531543 GATGTGTAAGTAAGG TGG-TAAGGTCAC-TCCC CAG GGGACGTGACCTTATCCA TATTTACGCCGGAAT TERM 1878 1531543 - 1531566 + T 82 -11.8 -3.452 | gap 1, opp_overlap 1531536 1531535, overlap 1531537 1531535 TAAGTAAGGTGGTAA GGTCAC-TCCC CAG GGGACGTGACC TTATCCATATTTACG katE 1533838 - 1531577 - | hydroperoxidase II SFV_1489 1534021 - 1534284 + | cell division modulator TERM 1879 1535368 - 1535338 - T 90 -10.4 -4.33653 | CATTTAAAAAGTAAA GCAACGGCCCCTAT ACA AAACGGACCGTTGC CAGCATAAGAATTAA SFV_1493 1537493 - 1536903 - | hypothetical protein TERM 1880 1537485 - 1537470 - G 73 -4 -4.74767 | gap 1, overlap 1537472 ACAAGCAATAGAAAA GAGAAGG TGA CCTTC-C GCCGTCATGATAAAA TERM 1881 1537484 - 1537472 - G 72 -7.7 -3.97283 | overlap 1537470 AAGCAATAGAAAAGA GAAGG TGA CCTTC CGCCGTCATGATAAA TERM 1882 1537625 - 1537652 + r 95 -17 -2.70932 | opp_overlap 1537625 AATTCAGATAAAGAA CCAGGGGCAGCG TGAT CACTGCCCCTGG TCATTAACCGAGAAG TERM 1883 1537652 - 1537625 - R 100 -19.2 -4.16301 | opp_overlap 1537625 AATTCAGATAAAGAA CCAGGGGCAGCG TGAT CACTGCCCCTGG TCATTAACCGAGAAG yniC 1538324 - 1537656 - | 2-deoxyglucose-6-phosphatase TERM 1884 1538656 - 1538667 + G 90 -7.2 -5.15381 | GATCGATATGATGCA GGCG AATA CGCC TTTTTTGAATCTGTT TERM 1885 1538733 - 1538753 + G 81 -6.1 -4.84359 | overlap 1538736 GTGTGAACGTTATGT TCTGGGTGA TTT TCATCCTGA TTTTTGTCGGACTGG SFV_1495 1538471 - 1539007 + | hypothetical protein TERM 1886 1539014 - 1539030 + T 71 -10.8 -2.64099 | opp_overlap 1539014, overlap 1539013 TTTATTTAATCAAAA GGCCGC ACGGA GCGGCC ATTATCCTCAACCCA TERM 1887 1539030 - 1539014 - T 93 -10.8 -4.43477 | opp_overlap 1539014 1539013 TTTATTTAATCAAAA GGCCGC ACGGA GCGGCC ATTATCCTCAACCCA SFV_1496 1539908 - 1539048 - | hypothetical protein TERM 1888 1539612 - 1539600 - G 90 -9.1 -4.48713 | CTGACCAAGAATAAA TGCGC TAT GCGCA TCCAGCGGACGAGGT SFV_1497 1540304 - 1540014 - | hypothetical protein TERM 1889 1540375 - 1540398 + r 100 -9.6 -5.06414 | overlap 1540377 CGACAGGTTGGTGGT GATTCCCCCA ATGC TGGGGGAATG TTTTTGTTAGCGGGA TERM 1890 1540377 - 1540396 + r 95 -12.2 -4.16307 | overlap 1540375 ACAGGTTGGTGGTGA TTCCCCCA ATGC TGGGGGAA TGTTTTTGTTAGCGG pfkB 1541334 - 1540405 - | 6-phosphofructokinase 2 TERM 1891 1541577 - 1541593 + H 100 -6.5 -5.88565 | CTTAAGAAAGTTTCC GGGACCG CGA TGGTCTC TTTTTTTGTTGTACG TERM 1892 1541754 - 1541744 - g 83 -5.4 -5.03314 | opp_overlap 1541744 GCCAGCGCTAAAAAA CCTT TCG AAGG TAATCTGAACGCAGG TERM 1893 1542141 - 1542129 - g 73 -9.1 -3.67141 | opp_overlap 1542134, overlap 1542133 ACAATGCCAGTGAAA CCCAG CCG CTGGG CTATGCCTCCGGGGC SFV_1499 1541669 - 1542379 + | hypothetical protein TERM 1894 1542386 - 1542414 + T 79 -10.9 -3.38317 | opp_overlap 1542385, overlap 1542384 1542388 AGCATGTAAAATTAT CTGCCGGACCGTG TTA TGCGGTCTGGCTG TCTTCGTTTGTCACT TERM 1895 1542388 - 1542412 + T 79 -12.1 -3.25317 | opp_overlap 1542385, overlap 1542386 1542384 CATGTAAAATTATCT GCCGGACCGTG TTA TGCGGTCTGGC TGTCTTCGTTTGTCA SFV_1500 1542650 - 1542432 - | hypothetical protein insB 1543869 - 1543366 - | IS1 ORF2 SFV_1502 1543944 - 1544162 + | putative IS1 encoded protein TERM 1896 1544192 - 1544202 + F 83 -4 -5.34555 | opp_overlap 1544192 GTTTCCAGTAATAAG GAAA TGA TTTC TTTTTTATAGTGTAA TERM 1897 1545750 - 1545736 - g 73 -9.2 -3.61715 | CAGCGCCTGGAAGAA GCCGCG AAA CGCGAC CACCGTAAAATCGGT TERM 1898 1545951 - 1545941 - g 71 -2.4 -5.00616 | TCCTGTGGGAAAAAA CCGG TCA CTGG GACAACTACAAAGAT TERM 1899 1546620 - 1546645 + G 72 -8.9 -3.8512 | overlap 1546622 ATTCGCTGGTTTCTT CCCGACCTGGC TTGC GCCAGTTCAGG TTGTTATCATGAATA thrS 1545022 - 1546950 + | threonyl-tRNA synthetase TERM 1900 1547354 - 1547330 - g 72 -6.4 -4.39571 | gap 1 GTGATAAAGCCAAAA TCACG-CTGCG TTTC CGCGGTCGTGA GATGGTGCACCAGCA infC 1547062 - 1547496 + | translation initiation factor IF-3 TERM 1901 1547513 - 1547542 + F 76 -9.3 -3.72593 | opp_overlap 1547509, overlap 1547535 GCCTTCAAGTAGCAC TATCTGTGGAGCC TTTG GGCTTCACAGGCA TTGTTCGCCTTTGTT rpmI 1547578 - 1547790 + | 50S ribosomal protein L35 rplT 1547843 - 1548199 + | 50S ribosomal protein L20 TERM 1902 1548229 - 1548211 - f 79 -10.3 -3.62418 | opp_overlap 1548211 ATAAGCCAGTTGAAA GAGGGAG CTAGT CTCCCTC TTTTCGTTTCAACGC TERM 1903 1548211 - 1548229 + F 93 -10.3 -4.54727 | opp_overlap 1548211 ATAAGCCAGTTGAAA GAGGGAG CTAGT CTCCCTC TTTTCGTTTCAACGC TERM 1904 1548416 - 1548431 + G 100 -10.4 -5.71712 | opp_overlap 1548416 AAACAGCGCCTGAAA GCCTCC CAGT GGAGGC TTTTTTTGTATGCGC TERM 1905 1548431 - 1548416 - g 74 -10.4 -3.55815 | opp_overlap 1548416 AAACAGCGCCTGAAA GCCTCC CAGT GGAGGC TTTTTTTGTATGCGC pheM 1548326 - 1548460 + | phenylalanyl-tRNA synthetase (pheST) operon leader peptide TERM 1906 1548478 - 1548464 - f 82 -2.7 -5.61881 | TTTGAAAAATAAAAA GCCAG TCTAT CAGGC GTAATTGTCGCAGCC TERM 1907 1548766 - 1548754 - g 71 -2.6 -5.0133 | TATTTGGGTAAAAAA GGGC ACTTA ACCC TTCAGATGACGACCC pheS 1548649 - 1549632 + | phenylalanyl-tRNA synthetase subunit alpha pheT 1549647 - 1552034 + | phenylalanyl-tRNA synthetase subunit beta ihfA 1552039 - 1552338 + | integration host factor subunit alpha TERM 1908 1552356 - 1552370 + F 100 -12.8 -5.80951 | opp_overlap 1552356 TGATCTAACTAAAAA GGCCGC TAT GCGGCC TTTTTTCTTTTCACT TERM 1909 1552370 - 1552356 - f 100 -12.8 -4.88407 | opp_overlap 1552356 TGATCTAACTAAAAA GGCCGC TAT GCGGCC TTTTTTCTTTTCACT btuC 1552439 - 1553419 + | vtamin B12-transporter permease btuE 1553482 - 1554033 + | putative glutathione peroxidase btuD 1554033 - 1554782 + | vitamin B12-transporter ATPase nlpC 1554860 - 1555324 + | lipoprotein TERM 1910 1555337 - 1555363 + T 100 -19.6 -3.79747 | opp_overlap 1555337 TAGTATGTCGAAAAA TTGACGGCGATG ATA CATCGCCGTCAA TTTACTCCTGAATAC TERM 1911 1555363 - 1555337 - T 100 -19.6 -4.60487 | opp_overlap 1555337 TAGTATGTCGAAAAA TTGACGGCGATG ATA CATCGCCGTCAA TTTACTCCTGAATAC TERM 1912 1555505 - 1555447 - T 86 -4.3 -5.55698 | gap 5, opp_overlap 1555464 1555466 1555500 1555502, overlap 1555448 1555461 1555465 1555466 GATAATCTAAAAAAA GGCCCCCTGAAAAAGTAATGCCAGTCAGTT AAGC AACTGACTGGC--T-CTTTTTC-GGGG-CT GTGGGGTATTTCCAG TERM 1913 1555504 - 1555448 - T 71 -7.8 -3.91792 | gap 5, opp_overlap 1555464 1555466 1555500 1555502, overlap 1555447 1555461 1555465 1555466 ATAATCTAAAAAAAG GCCCCCTGAAAAAGTAATGCCAGTCAGTT AAGC AACTGACTGGC--T-CTTTTTC-GGGG-C TGTGGGGTATTTCCA TERM 1914 1555496 - 1555461 - T 74 -5.4 -4.56775 | opp_overlap 1555464 1555466, overlap 1555448 1555447 1555465 1555466 AGGCCCCCTGAAAAA GTAATGCCAGTCAGTT AAGC AACTGACTGGCTCTTT TTCGGGGCTGTGGGG TERM 1915 1555464 - 1555493 + T 89 -9.3 -4.59109 | opp_overlap 1555461 1555448 1555447 1555465 1555466, overlap 1555466 CCCCCTGAAAAAGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 1916 1555492 - 1555465 - T 93 -12.8 -3.80855 | opp_overlap 1555464 1555466, overlap 1555461 1555448 1555447 1555466 CCCCTGAAAAAGTAA TGCCAGTCAGTT AAGC AACTGACTGGCT CTTTTTCGGGGCTGT TERM 1917 1555491 - 1555466 - T 93 -16.3 -2.88031 | opp_overlap 1555464 1555466, overlap 1555465 1555461 1555448 1555447 CCCTGAAAAAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG TERM 1918 1555466 - 1555491 + T 100 -16.3 -3.90762 | opp_overlap 1555466 1555465 1555461 1555448 1555447, overlap 1555464 CCCTGAAAAAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_1516 1556821 - 1555475 - | IS4 orf TERM 1919 1556836 - 1556811 - G 100 -9.8 -5.61596 | opp_overlap 1556811 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 1920 1556811 - 1556836 + g 73 -9.1 -3.61398 | opp_overlap 1556811 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 1921 1557480 - 1557508 + G 77 -5.9 -4.63218 | GCGGTTTTTGATGGT CTTTTCACCCGCG TAA TGCTGGAGAAAGG TTTTATTCAGCAACA SFV_1517 1557009 - 1557722 + | hypothetical protein TERM 1922 1557776 - 1557796 + G 77 -6.1 -4.63932 | opp_overlap 1557776 1557774 CTACACTATCAAACA GATAGGATC TAT GACCCTGTC TTTTATTACCCGCTG SFV_1518 1557732 - 1559222 + | hypothetical protein ydiE 1559444 - 1559226 - | hypothetical protein TERM 1923 1559543 - 1559520 - R 95 -13.2 -3.86822 | opp_overlap 1559518 CAAGTTGCGCAGAAA TGCCCATCCC ATCA GGAATGGGCA CGTATTCAGAAGCGG aroH 1560595 - 1559549 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1924 1559941 - 1559954 + g 86 -6.7 -4.96848 | opp_overlap 1559941, overlap 1559931 CGCTGGTCTGATAGA TGGTC ATCT GACCA TTTTTGTCTGGCGAG TERM 1925 1560763 - 1560736 - R 95 -7.8 -5.33131 | opp_overlap 1560744 TAACAAAAAAACAAA CCAATGCACTAG TTCT CTAGTACATTCG GCGACTAAGGCCCAT ydiA 1561585 - 1560752 - | hypothetical protein TERM 1926 1561664 - 1561680 + H 78 -5.9 -4.855 | overlap 1561670 TAGGACGTAATGTCT GGTTTAT AAA ATGAACC TTCTTTTTATTTTTC TERM 1927 1563605 - 1563623 + G 78 -8 -4.36914 | opp_overlap 1563604, overlap 1563617 1563620 TCTGACTGAAGGGAT CGCGACGC TGG GTGCCGCG TTTTATCCGAAGCGC ppsA 1561917 - 1564295 + | phosphoenolpyruvate synthase TERM 1928 1564332 - 1564298 - T 82 -5.5 -5.10665 | opp_overlap 1564303, overlap 1564302 1564303 ACTGAAGAAATAAAA TAAATCCCCGGCGGC GTTCA GTCGCCGGGGTTATG TGATCCCCGAAGATG TERM 1929 1564328 - 1564302 - T 100 -10.7 -5.02645 | opp_overlap 1564303, overlap 1564298 1564303 AAGAAATAAAATAAA TCCCCGGCGGC GTTCA GTCGCCGGGGT TATGTGATCCCCGAA TERM 1930 1564303 - 1564327 + T 100 -16.4 -3.54475 | opp_overlap 1564302 1564298 1564303 AGAAATAAAATAAAT CCCCGGCGGC GTTCA GTCGCCGGGG TTATGTGATCCCCGA TERM 1931 1564327 - 1564303 - T 93 -14.2 -3.57927 | opp_overlap 1564303, overlap 1564302 1564298 AGAAATAAAATAAAT CCCCGGCGGC GTTCA GTCGCCGGGG TTATGTGATCCCCGA ydiD 1565998 - 1564352 - | short chain acyl-CoA synthetase TERM 1932 1565173 - 1565141 - G 85 -9.8 -4.16904 | overlap 1565162 AAGATCATAGACAAA CGGCGTTGCGCCTA GCATA CAGGTGCAACGCTG CTGCTCAAGCAGCGC TERM 1933 1566044 - 1566019 - R 86 -11.2 -3.81755 | gap 1, overlap 1566022 ACTCTCGAAACAGAA CATCAGGCCCG AGTTG CGGGCCTG-TG GGATGCATGATTAGC TERM 1934 1566042 - 1566022 - R 83 -14 -2.69057 | overlap 1566019 CTCGAAACAGAACAT CAGGCCCG AGTTG CGGGCCTG TGGGATGCATGATTA ydiT 1566348 - 1566055 - | hypothetical protein ydiS 1567634 - 1566345 - | hypothetical protein ydiR 1568628 - 1567690 - | electron transfer flavoprotein subunit YdiR ydiQ 1569412 - 1568648 - | putative electron transfer flavoprotein YdiQ TERM 1935 1569669 - 1569701 + H 80 -6.3 -4.90869 | opp_overlap 1569653 1569676, overlap 1569677 GCGGTTGTATAACCG CAATACACGCCGTAT TTT ATCCGGCATATATTG TTTTTGCTTGCTCAT SFV_1528 1569734 - 1570234 + | putative ARAC-type regulatory protein SFV_1529 1570387 - 1570202 - | putative IS1 encoded protein insB 1570462 - 1570965 + | IS1 ORF2 SFV_1531 1572289 - 1571528 - | transcriptional regulator YdeO TERM 1936 1572794 - 1572764 - R 81 -12.8 -3.28537 | opp_overlap 1572758 ATAGTCAATGAGGAA TTCTTCTGCTGT GCGGATG ACAGCAGAAGAA ATGAGAAGAGGCATT SFV_1532 1575087 - 1572808 - | putative oxidoreductase SFV_1533 1576158 - 1575421 - | fimbrial-like adhesin protein TERM 1937 1575532 - 1575569 + gr 71 -3.4 -4.74103 | gap 1, overlap 1575535 TACTTTGCTTTTATT TACTGTCCCCAGGGAGA CATTT TCTCCC-GTAGCCAGTA TTTTTCCATTACGCA SFV_1534 1576345 - 1576130 - | putative IS1 encoded protein insB 1576420 - 1576923 + | IS1 ORF2 SFV_1536 1577106 - 1577819 + | IS600 ORF2 TERM 1938 1578087 - 1578065 - T 100 -9.9 -5.68489 | opp_overlap 1578065 GACAACAATAAAAAA GCCACCAGT TAACT ACTGATGGC TCTGATAACTCATGC SFV_1537 1578534 - 1578331 - | hypothetical protein TERM 1939 1578618 - 1578606 - R 83 -4.1 -5.28942 | overlap 1578607 TACCTTAAATAAAAA CCTGA TTA TCAAG CAGATATGCATGGAT TERM 1940 1579170 - 1579149 - R 100 -15.9 -4.3341 | CAAAATCAATATAAA CAGCCCCTC CGGA GAGGGGCTG GAGAGTGGCGCTATG TERM 1941 1580340 - 1580325 - R 95 -7.5 -5.4505 | opp_overlap 1580325 1580338, overlap 1580326 TTTCGCAATAAAAAA CCCGC TCAGCG GCGGG TTGTAGAAACTCTTC TERM 1942 1580336 - 1580326 - R 74 -8.2 -3.86307 | opp_overlap 1580325, overlap 1580325 TTCGCAATAAAAAAC CCGC TCA GCGG CGGGTTGTAGAAACT SFV_1541 1581615 - 1581259 - | putative endonuclease of cryptic prophage SFV_1542 1582678 - 1581941 - | hypothetical protein TERM 1943 1582950 - 1582979 + r 77 -11.4 -3.13403 | overlap 1582948 GTAATATTTTGCGTT GCGTGCCATCGG TTTTCT CCGGTGGCACGG TGTTACTCAGCGGGA SFV_1543 1583276 - 1583025 - | hypothetical protein TERM 1944 1583423 - 1583410 - R 100 -9.5 -5.77734 | opp_overlap 1583410 AAATAAAAACAAAAA CCCGC CGAA GCGGG TTAAGTGCGGGTGCG TERM 1945 1583410 - 1583423 + r 70 -9.5 -3.06183 | opp_overlap 1583410 AAATAAAAACAAAAA CCCGC CGAA GCGGG TTAAGTGCGGGTGCG TERM 1946 1583620 - 1583635 + r 83 -9 -4.36411 | ACAGATGACGATCAG GGCGAT TAAC ATCGCC TTTTGCTGCTTCATA relB 1584247 - 1584008 - | bifunctional antitoxin/transcriptional repressor RelB SFV_1545 1585287 - 1584574 - | IS600 ORF2 SFV_1546 1585730 - 1585428 - | IS600 ORF1 SFV_1547 1585807 - 1586811 + | putative transport protein TERM 1947 1586820 - 1586843 + F 100 -9.6 -5.16841 | TCTGTAAACCCTCAA TCCCTTCTCT TACC GGAGAGGGGA TTTTTATTCATATAA ydfI 1586900 - 1588360 + | putative oxidoreductase TERM 1948 1588389 - 1588366 - T 100 -11.8 -5.63103 | gap 1, overlap 1588370 CGTGAAGTAAAAAAA GCAATGCCGCC ATC GGCGGCATT-C ACACACTTAGTTCAT TERM 1949 1588386 - 1588370 - T 100 -13.7 -4.07651 | overlap 1588366 AAGTAAAAAAAGCAA TGCCGCC ATC GGCGGCA TTCACACACTTAGTT SFV_1549 1588599 - 1588396 - | hypothetical protein TERM 1950 1588770 - 1588743 - R 76 -8.4 -4.08064 | opp_overlap 1588766, overlap 1588744 AAGGCGGGGGGAAAA GCCTCTCATCCC GGAT GGGATGAGAGTA AATGAATTACTCTTC TERM 1951 1588769 - 1588744 - R 78 -11.9 -3.04517 | opp_overlap 1588766, overlap 1588743 AGGCGGGGGGAAAAG CCTCTCATCCC GGAT GGGATGAGAGT AAATGAATTACTCTT ydfH 1589415 - 1588777 - | hypothetical protein TERM 1952 1589543 - 1589526 - R 84 -10.5 -3.8591 | TGTGACAAGCAATAA CCCGGCA GTTA CGCCGGG TATAAAAATTACTGA ydfG 1590298 - 1589552 - | 3-hydroxy acid dehydrogenase dcp 1590435 - 1592480 + | dipeptidyl carboxypeptidase II TERM 1953 1592529 - 1592482 - T 79 -8.5 -4.2074 | gap 2, opp_overlap 1592488 1592492, overlap 1592484 1592491 1592492 GCTTGAACATATAAA CACCACCAATGGCTGGCCTGGAG ATAT CGCCAGGCCAGCC-T-GGTTATA GCAGTAATTGCAGCA TERM 1954 1592527 - 1592484 - T 76 -8.9 -3.70043 | gap 2, opp_overlap 1592488 1592492, overlap 1592482 1592491 1592492 TTGAACATATAAACA CCACCAATGGCTGGCCTGGAG ATAT CGCCAGGCCAGCC-T-GGTTA TAGCAGTAATTGCAG TERM 1955 1592488 - 1592524 + T 86 -13 -3.32268 | gap 1, opp_overlap 1592484 1592482 1592491 1592492, overlap 1592492 ACATATAAACACCAC CAATGGCTGGCCTGGAG ATAT CGCCAGGCCAGCC-TGG TTATAGCAGTAATTG TERM 1956 1592522 - 1592491 - T 100 -15.8 -3.31691 | opp_overlap 1592488 1592492, overlap 1592484 1592482 1592492 TATAAACACCACCAA TGGCTGGCCTGGAG ATAT CGCCAGGCCAGCCT GGTTATAGCAGTAAT TERM 1957 1592521 - 1592492 - T 100 -19.3 -2.58292 | opp_overlap 1592488 1592492, overlap 1592491 1592484 1592482 ATAAACACCACCAAT GGCTGGCCTGGAG ATAT CGCCAGGCCAGCC TGGTTATAGCAGTAA TERM 1958 1592492 - 1592521 + T 100 -19.3 -2.83271 | opp_overlap 1592492 1592491 1592484 1592482, overlap 1592488 ATAAACACCACCAAT GGCTGGCCTGGAG ATAT CGCCAGGCCAGCC TGGTTATAGCAGTAA ydeJ 1593043 - 1592525 - | competence damage-inducible protein A TERM 1959 1592980 - 1592952 - G 84 -13.9 -2.55074 | opp_overlap 1592948 GTTAAGCGTAATTGA TCCGCGATAAGTC TTT GACTCAACGCGGA TGTCAGGTTTTCAAT TERM 1960 1593424 - 1593397 - g 74 -7.6 -4.07885 | overlap 1593400 CAGGGCGGTTTAAAA CAGGATGCAGCG CCAC CGCCGCCTCATG CAATAGAAGATGGCT ydeI 1593319 - 1593552 + | hypothetical protein SFV_1555 1593786 - 1593911 + | IS600 ORF1 SFV_1556 1594052 - 1594765 + | IS600 ORF2 TERM 1961 1595190 - 1595212 + T 82 -12 -3.47383 | opp_overlap 1595189, overlap 1595187 TGATTAACTAACTAT GGTCTGGACC AAT GGTCTGGACC TGTTGTTAATATAAT SFV_1557 1596910 - 1595939 - | putative oxidoreductase, major subunit TERM 1962 1596297 - 1596316 + g 72 -5.6 -4.57073 | ATAACAATCATTTTG GCGTTCGA TTTC TCGCGCGC TTTTTCAAGAAGATA TERM 1963 1597241 - 1597219 - R 76 -12 -2.74144 | opp_overlap 1597219, overlap 1597218 GTTGTATGTTCAAAT CGCCGGATGT GTC ATATCCGGCG TTCAGTCGATAATGT TERM 1964 1597219 - 1597241 + r 85 -14.2 -3.08642 | opp_overlap 1597219 1597218 GTTGTATGTTCAAAT CGCCGGATGT GTC ATATCCGGCG TTCAGTCGATAATGT SFV_1558 1597605 - 1597258 - | hypothetical protein ynfC 1597635 - 1598381 + | hypothetical protein SFV_1561 1599320 - 1598979 - | hypothetical protein SFV_1562 1599446 - 1599781 + | hypothetical protein rspA 1599987 - 1601201 + | starvation sensing protein SFV_1564 1601278 - 1601556 + | ISEhe3 orfA SFV_1565 1602883 - 1601978 - | insertion element IS2 transposase InsD SFV_1566 1603026 - 1602841 - | IS2 orf1 ydeW 1604268 - 1603315 - | putative sorC family transcriptional regulator TERM 1965 1604213 - 1604197 - G 78 -7.9 -4.34402 | overlap 1604198 GTCGTGATAGTAAAA CCACGCG ATC CGCGCGA CCTGTTCTTCTTCAC TERM 1966 1604889 - 1604909 + G 79 -10.4 -3.85092 | AAAATGAAGAACTTG CTGGCGGC GCTGG GCTGCCAG TTTGATCTGCATAGT TERM 1967 1605856 - 1605888 + G 85 -12 -3.58365 | TCTACCAGCTGTTGC GCAGCATCGCCGCA CAGAA TGTGGCTGTGCTGC TTATCTCCTCTGATA SFV_1568 1604517 - 1606052 + | putative ATP-binding component of a transport system TERM 1968 1606584 - 1606599 + G 75 -4.6 -4.82901 | opp_overlap 1606584, overlap 1606573 1606572 1606586 GGCTGCTGGCGAAGA CGGCGT TTGG ACGCAG TTTTTATGCCACGGG ydeY 1606046 - 1607074 + | putative transport system permease protein TERM 1969 1607664 - 1607674 + G 74 -8.2 -3.86822 | GATTGGGCAAAGCCC GCGC GTG GCGC TTTATAGCGCGATTC TERM 1970 1607879 - 1607890 + G 81 -7.2 -4.71828 | GTTCCATTATCGGCA CCGC CATT GCGG TTTTATTAGTGGGAT ydeZ 1607074 - 1608066 + | putative transport system permease protein SFV_1572 1609316 - 1609681 + | insertion sequence 2 OrfA protein SFV_1573 1609639 - 1610544 + | insertion element IS2 transposase InsD yneB 1610569 - 1611339 + | aldolase SFV_1575 1611363 - 1611653 + | autoinducer-2 (AI-2) modifying protein LsrG SFV_1576 1611693 - 1612451 + | trans-aconitate 2-methyltransferase SFV_1577 1613420 - 1612455 - | hypothetical protein TERM 1971 1613055 - 1613065 + g 72 -4.6 -4.70659 | overlap 1613045 1613042 1613040 TACACTTGCCGAATC CGGC AAT GTCG TTTTTACCTCTCGCA TERM 1972 1613187 - 1613174 - G 79 -2.3 -5.28166 | GAAAACCAAGAAAAA TGGCG ATGG CGACA CCGAGAATGCTGAAC TERM 1973 1614020 - 1614010 - g 79 -4.6 -5.00616 | overlap 1614011 1614012 GTCCTGCGGAAAAAA GGCC ACA GACC TGTGGATAGCGACAC TERM 1974 1614555 - 1614541 - g 73 -9.2 -3.65046 | TCGTTATCTGAAGAA GCCGCC GAT AGCGGC CTCCCGGCTGGCACA TERM 1975 1614651 - 1614639 - g 73 -9.1 -3.66095 | AAACGGCGACGGAAA CGCTG ACA CAGCG TGAGCTGGTCGCGAG SFV_1578 1613768 - 1614688 + | IS1294 orf SFV_1579 1614701 - 1614835 + | IS1294 orf TERM 1976 1615243 - 1615228 - T 93 -10.4 -4.58585 | TAGTGAAATAAGAAA CCCGGT CGAA ACCGGG TTCAGAAGTAACGGT uxaB 1616714 - 1615263 - | altronate oxidoreductase SFV_1581 1618359 - 1616941 - | hypothetical protein TERM 1977 1617642 - 1617605 - G 70 -9.9 -3.14404 | ATATCAATCACCGAA TTTGCCCCCAGTACGAT TTCC ACCGCACCGGTGACAAA GGTTAACAGACATGT TERM 1978 1618300 - 1618290 - G 75 -5.4 -4.62069 | opp_overlap 1618290 TGGTTAGCGCAAAAA TAGC GAT GCTA TTACGTAGCAGATGA SFV_1582 1618857 - 1618498 - | hypothetical protein TERM 1979 1618631 - 1618613 - G 82 -11.7 -3.524 | CACTTAGCCAGACAA CCGCGAC AGCAG GTCGCGG TGGCGTGCTGAGCGA yneH 1619680 - 1618886 - | putative glutaminase TERM 1980 1619707 - 1619731 + r 72 -10.8 -2.87931 | gap 1 CTTTCTACTCCTGGA C-CGCAGGTCT GAAA AGACCTGCGAG TATATCAGAGCTGAA TERM 1981 1620156 - 1620168 + r 86 -9.1 -4.3898 | opp_overlap 1620151 1620150 AGTAACAAACGCGCA CCCTG CGC CAGGG TTTTCTCCACCTGAT TERM 1982 1620597 - 1620611 + r 79 -11.4 -3.36569 | overlap 1620595 CAGCCATATACGCCT TGCGGG ATT CCCGCA TCTTTAAACACTTGG SFV_1585 1620924 - 1620742 - | putative IS1 encoded protein insB 1620999 - 1621502 + | IS1 ORF2 TERM 1983 1622007 - 1622018 + G 72 -5.8 -4.40605 | TTTCAGACCGGCGTC GAGC GTGT GCTC TTTCTGTTTATGAAT SFV_1587 1621572 - 1622687 + | hypothetical protein ydeA 1622837 - 1624027 + | sugar efflux transporter TERM 1984 1624047 - 1624034 - T 79 -9.5 -3.6707 | opp_overlap 1624034 ACGCAATAGTTGAAA GGCCC ATTC GGGCC TTTTTTAATGGTACG TERM 1985 1624034 - 1624047 + T 100 -9.5 -5.1861 | opp_overlap 1624034 ACGCAATAGTTGAAA GGCCC ATTC GGGCC TTTTTTAATGGTACG ydeB 1624717 - 1624052 - | multiple drug resistance protein MarC marR 1624929 - 1625363 + | DNA-binding transcriptional repressor MarR TERM 1986 1625721 - 1625733 + G 72 -4.7 -4.68424 | GATGACCAATATGCA GGGCG AAT CGCGC TTTTTACATCCATTA marA 1625383 - 1625766 + | DNA-binding transcriptional activator MarA TERM 1987 1625902 - 1625935 + G 77 -8.9 -4.08485 | gap 1, overlap 1625902 TTCTTGTGCCAATGT C-GTGGTTGTTCCCCC ATC GCAGGAACAACCACCG TTTGATTTAAATCAC marB 1625798 - 1626016 + | hypothetical protein TERM 1988 1626026 - 1626043 + T 93 -12.7 -3.73068 | ATGTAGTTTGTTCTG GCCCCGA CATC TCGGGGC TTATTAACTTCCCAC ydeD 1626946 - 1626047 - | O-acetylserine/cysteine export protein TERM 1989 1626588 - 1626577 - G 77 -5.8 -4.63527 | opp_overlap 1626583 CCAGTACGCCAAAAA TCGC TAAG GCGA TCCCCGCCAATTGTT TERM 1990 1626644 - 1626632 - G 70 -6.9 -4.05788 | CTCCCCGAAAGTAAA CGCGC CAA GCACG ATAGTAAAAAACGCC TERM 1991 1626678 - 1626656 - G 84 -4 -5.23316 | overlap 1626673 CACGATAGTAAAAAA CGCCTGTGCC TGT AACACCAGCG AAGCCAGTCCAGCAG TERM 1992 1626824 - 1626803 - G 86 -3.6 -5.4505 | overlap 1626805 TCGTGCAACAAAAAA GATGGCCG GAAAAG CGACCAGC ATAAAGCGCAAACCG TERM 1993 1627216 - 1627206 - H 72 -5.4 -4.48902 | opp_overlap 1627211, overlap 1627208 1627211 AGAGATGTAAAGAAA TAGC ATG GCTA CGCTGCCATTTATGA ydeF 1627210 - 1628328 + | putative transport protein TERM 1994 1628304 - 1628320 + T 72 -5.7 -4.40298 | overlap 1628303 GATTCGTGCAAGACC GTGGGGG CAG CCCGCGC TTTGTTGATTTAAGT TERM 1995 1628575 - 1628611 + T 100 -10.2 -4.82901 | gap 1, opp_overlap 1628576, overlap 1628576 1628578 ATAATCCCTCACCTA ACCGGCCCCTTGTTACA GTTG TGTA-CAAGGGGCCTGA TTTTTATGACGGCGA TERM 1996 1628610 - 1628576 - T 85 -13.7 -3.06133 | gap 1, opp_overlap 1628576 1628575 1628578 TAATCCCTCACCTAA CCGGCCCCTTGTTACA GTTG TGTA-CAAGGGGCCTG ATTTTTATGACGGCG TERM 1997 1628576 - 1628610 + T 93 -13.7 -3.49419 | gap 1, opp_overlap 1628576, overlap 1628575 1628578 TAATCCCTCACCTAA CCGGCCCCTTGTTACA GTTG TGTA-CAAGGGGCCTG ATTTTTATGACGGCG TERM 1998 1628578 - 1628608 + T 93 -14.9 -3.31915 | gap 1, opp_overlap 1628576, overlap 1628576 1628575 ATCCCTCACCTAACC GGCCCCTTGTTACA GTTG TGTA-CAAGGGGCC TGATTTTTATGACGG TERM 1999 1628651 - 1628634 - T 100 -10.5 -5.76949 | GACGGCGAAAAAAAA CCGCCAG TAAA CCGGCGG TGAATGCTTGCATGG SFV_1595 1629512 - 1628799 - | IS600 ORF2 SFV_1596 1629778 - 1629653 - | IS600 ORF1 SFV_1597 1630577 - 1630017 - | hypothetical protein TERM 2000 1630724 - 1630697 - H 75 -9.9 -3.61398 | CCTGTCTGGCAACAA TCGCGCCCATC TATATT GATGGACACGA ACGATGAATTCCCAG TERM 2001 1631064 - 1631076 + G 73 -9.1 -3.62046 | opp_overlap 1631057 GCTAAGCAGGCATTA CAGCC TGG GGCTG TTGTTGCCCGGATCG SFV_1598 1630728 - 1631402 + | ISSfl4 ORF1 SFV_1599 1631476 - 1631802 + | IS629 ORF1 TERM 2002 1632118 - 1632106 - g 70 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SFV_1600 1632038 - 1632685 + | IS629 ORF2 SFV_1602 1633525 - 1632725 - | putative integrase TERM 2003 1634039 - 1634013 - gH 91 -3.1 -5.54192 | gap 1 ACGAACTGAAAAAAA TGGGTATCTATA AGCG TAAAGAT-CCCA ATGGCCATTTTGTCG SFV_1601 1633508 - 1634617 + | putative oxidoreductase, major subunit TERM 2004 1635635 - 1635621 - fH 77 -3.5 -5.1861 | GTTACGATGAAAAAA CGCTG CCCGC CAACG CACCACGTAACGCGC TERM 2005 1636055 - 1636072 + FH 76 -4.1 -4.93296 | opp_overlap 1636049 1636055 CGTGGAAAAGAAAAA CTGGATG TCCC CATCAAG TTTTTATGGTGCTAC TERM 2006 1636072 - 1636055 - fH 86 -4.1 -5.45802 | opp_overlap 1636055, overlap 1636049 CGTGGAAAAGAAAAA CTGGATG TCCC CATCAAG TTTTTATGGTGCTAC SFV_1604 1636727 - 1637344 + | putative oxidoreductase, Fe-S subunit TERM 2007 1637467 - 1637453 - g 72 -5.7 -4.56597 | overlap 1637457 GTTCGCCGCCAAAAA TGACG CAGAC CGTCA GCACATTGTTCGTGG TERM 2008 1637710 - 1637724 + G 78 -7.8 -4.3586 | GGTTACTTGTCAGCA TGGCGC TCG GCGTCA TTTTCGTCTGGATGA SFV_1605 1637346 - 1638200 + | putative DMSO reductase anchor subunit TERM 2009 1638207 - 1638226 + F 72 -9.2 -3.6106 | opp_overlap 1638206 1638205, overlap 1638208 GCAGGTTAACAAATT GGTGCGGG GCAA CCCGCACA TTTCAGGATGTTAGG TERM 2010 1638208 - 1638225 + F 79 -12.7 -2.76315 | opp_overlap 1638206 1638205, overlap 1638207 CAGGTTAACAAATTG GTGCGGG GCAA CCCGCAC ATTTCAGGATGTTAG TERM 2011 1638280 - 1638302 + F 93 -9.8 -4.65916 | overlap 1638278 ATAATTTTTCTGTCG CGGCGCGC GTGTTGG GCGCGCTG TTTTATTACGCTCCA TERM 2012 1638318 - 1638339 + F 73 -10.9 -2.74012 | gap 1, opp_overlap 1638322, overlap 1638321 TTTTATTACGCTCCA GAGAGTGCGG AAG CCGCAC-CTC TGGTTGCGGTACTCA TERM 2013 1638336 - 1638322 - f 74 -11.4 -2.8805 | opp_overlap 1638321 1638318 ATTACGCTCCAGAGA GTGCGG AAG CCGCAC CTCTGGTTGCGGTAC TERM 2014 1638393 - 1638418 + F 71 -6.9 -4.07885 | gap 1, opp_overlap 1638393 1638394, overlap 1638393 TGGCCTCTACCAGAA G-CGTCATTAGC GCC GCTGGTGACGGC TTTTCAGACACAGTG TERM 2015 1638712 - 1638724 + F 76 -4.8 -4.82518 | CATGGCACCTTTTTC CGTG GTCAA CACG TTTTCTTGATGTTTT TERM 2016 1638911 - 1638925 + F 89 -4.2 -5.80248 | opp_overlap 1638911 GATTCGGCAATAATA CGTTAC AAT GTCACG TTTTTTTATCTCTTA TERM 2017 1639365 - 1639400 + G 70 -10.4 -3.14344 | opp_overlap 1639364 1639362 1639361 GCCTGGTTAAATCAC TTGCCTCGCTGCTGGT AGTA ACCAGCGGCAGTGCAA TTGGTCGCGAAGGTG TERM 2018 1639504 - 1639528 + G 77 -12.1 -2.78715 | overlap 1639507 ATGGTTCGCCTGTGG GGCCGCGGC GGGAATG GCTGCGGCC TATCGTGCCCCGCTT TERM 2019 1640220 - 1640190 - g 77 -9.7 -3.64599 | opp_overlap 1640193, overlap 1640193 TGATGATATGTGAAA TGACCGGGGAGTA TCAGC TACTCCCCGGTTT ATTGATTGCCTGCGT TERM 2020 1640193 - 1640217 + G 100 -15.8 -4.33621 | opp_overlap 1640190 1640193 TGATATGTGAAATGA CCGGGGAGTA TCAGC TACTCCCCGG TTTATTGATTGCCTG TERM 2021 1640217 - 1640193 - g 95 -15.8 -2.93585 | opp_overlap 1640193, overlap 1640190 TGATATGTGAAATGA CCGGGGAGTA TCAGC TACTCCCCGG TTTATTGATTGCCTG SFV_1607 1638992 - 1640308 + | putative voltage-gated ClC-type chloride channel ClcB SFV_1608 1640956 - 1640261 - | putative dithiobiotin synthetase mlc 1642301 - 1641081 - | putative NAGC-like transcriptional regulator TERM 2022 1641745 - 1641734 - G 72 -7.2 -4.19624 | opp_overlap 1641734 CATGCTGAATATAAA CCGG TACG CCGG TATGCTGCTCCAGCG TERM 2023 1641748 - 1641775 + g 88 -8.4 -4.6951 | gap 1 ACCGGTACGCCGGTA TGCTGCTCCAGCG CCT CGCCG-AGCGGCA TTTCTTTTACATCCT TERM 2024 1642039 - 1642013 - G 70 -4.4 -4.4773 | overlap 1642007 1642015 GCAGAGCAAGGAAAA TCTCCCCGCG ACTAATG CGCAGAGAAA GATAGTGCCAGGCTT ynfL 1643338 - 1642436 - | LysR family transcriptional regulator TERM 2025 1643195 - 1643205 + g 72 -6.8 -4.25056 | overlap 1643184 AGTTCGTGCCAGCAG TCGG GCA CCGA TTTGTTGCTCCAGTG TERM 2026 1644738 - 1644703 - H 100 -12.1 -4.58395 | gap 2, opp_overlap 1644703 1644706 TGCACGCCTGAAAAA TAAGTCCGGACTGCGGT AAAT ACC-C-GTCCGGACTTA TTGCCTGCTCAAACC TERM 2027 1644703 - 1644738 + H 78 -12.1 -3.09516 | gap 2, opp_overlap 1644703, overlap 1644706 TGCACGCCTGAAAAA TAAGTCCGGACTGCGGT AAAT ACC-C-GTCCGGACTTA TTGCCTGCTCAAACC TERM 2028 1644706 - 1644735 + H 76 -9.4 -3.69395 | gap 2, opp_overlap 1644703, overlap 1644703 ACGCCTGAAAAATAA GTCCGGACTGCGGT AAAT ACC-C-GTCCGGAC TTATTGCCTGCTCAA TERM 2029 1645282 - 1645272 - g 72 -6.8 -4.17477 | overlap 1645273 1645275 AAAAAACAGCATAAA GCAG CAC CTGC CCAGAAAGCGCAGGC asr 1645095 - 1645430 + | acid shock protein precursor TERM 2030 1645475 - 1645505 + F 76 -11.9 -2.71924 | opp_overlap 1645473 1645476, overlap 1645474 TCGCGCCTGAAAATT ACGGTGCTAAGCG GGTAA CGTTTAGCACCGC CTTTAGCGGAGGGTA TERM 2031 1645504 - 1645476 - f 82 -13.2 -3.08032 | opp_overlap 1645475 1645474, overlap 1645473 CGCGCCTGAAAATTA CGGTGCTAAGCG GGTAA CGTTTAGCACCG CCTTTAGCGGAGGGT SFV_1613 1645706 - 1646527 + | hypothetical protein TERM 2032 1646568 - 1646528 - T 86 -9.1 -4.40561 | gap 1, opp_overlap 1646534 1646536, overlap 1646525 1646536 CTGTCGCAAAAATAA TGTTCAA-ACGCTGCCCG ACAGCG CGGGCAGCGTCTTCATCA GGCAAGTTTCACCAT TERM 2033 1646534 - 1646561 + T 81 -12.7 -3.14463 | opp_overlap 1646525 1646528 1646536, overlap 1646536 CAAAAATAATGTTCA AACGCTGCCCG ACAGCG CGGGCAGCGTC TTCATCAGGCAAGTT TERM 2034 1646536 - 1646559 + T 100 -15.3 -3.13403 | opp_overlap 1646525 1646528 1646536, overlap 1646534 AAAATAATGTTCAAA CGCTGCCCG ACAGCG CGGGCAGCG TCTTCATCAGGCAAG TERM 2035 1646559 - 1646536 - T 100 -15.3 -3.65722 | opp_overlap 1646536 1646534, overlap 1646525 1646528 AAAATAATGTTCAAA CGCTGCCCG ACAGCG CGGGCAGCG TCTTCATCAGGCAAG SFV_1614 1646895 - 1646566 - | multidrug efflux system protein MdtI SFV_1615 1647247 - 1646882 - | multidrug efflux system protein MdtJ TERM 2036 1647072 - 1647084 + g 90 -4.7 -5.40072 | opp_overlap 1647073, overlap 1647073 CACAGCGCATAAGCT ACGCC TAA GGCGA TTTTTTTAACGGCGA TERM 2037 1647073 - 1647083 + g 72 -8.2 -3.83561 | opp_overlap 1647073, overlap 1647072 ACAGCGCATAAGCTA CGCC TAA GGCG ATTTTTTTAACGGCG TERM 2038 1647369 - 1647359 - H 74 -8.2 -3.92804 | overlap 1647360 GAAGAAAGGACTAAA GCGC GTT GCGC CAGTGCTGCTCACCT tqsA 1647658 - 1648692 + | putative transport protein TERM 2039 1648714 - 1648689 - T 95 -13.3 -3.69068 | overlap 1648687 1648690 CGATCTCAATAAAGA GTGACGGCCTC CGCA GAGGCCGTCAG GGTTACAGAGCTTTC TERM 2040 1648713 - 1648690 - T 100 -16.8 -2.80958 | overlap 1648689 1648687 GATCTCAATAAAGAG TGACGGCCTC CGCA GAGGCCGTCA GGGTTACAGAGCTTT pntB 1650105 - 1648717 - | pyridine nucleotide transhydrogenase pntA 1651663 - 1650116 - | NAD(P) transhydrogenase subunit alpha TERM 2041 1650230 - 1650204 - G 72 -5.8 -4.3898 | overlap 1650208 AGCACCGCGATAAAA CTAAGGAAGCTA ACC CAGCCTCCCTGG CCAATCTGCAACAGT SFV_1619 1652172 - 1653116 + | hypothetical protein TERM 2042 1653137 - 1653153 + F 83 -10.8 -3.81062 | opp_overlap 1653137, overlap 1653129 CAGTTACTCCTATAA GGCGGC TTGAT GCCGCC TTTCGCATTTTTAGT TERM 2043 1653153 - 1653137 - f 77 -10.8 -3.31461 | opp_overlap 1653137 1653129 CAGTTACTCCTATAA GGCGGC TTGAT GCCGCC TTTCGCATTTTTAGT TERM 2044 1653715 - 1653727 + G 73 -4.1 -4.77036 | TGCATCGGCTTTATT GTGGA TTG TTCAC TTTTTGATCCTGCGC SFV_1620 1653302 - 1654684 + | putative arginine/ornithine antiporter TERM 2045 1655357 - 1655377 + G 76 -10.5 -3.35867 | opp_overlap 1655357, overlap 1655347 1655361 CCTGGCGAGAAAGAA GTGATCGAC CTG GTCGATTAC TTACTTACCAGTTGC TERM 2046 1655377 - 1655357 - g 77 -8.3 -4.06419 | opp_overlap 1655357 1655347 1655361 CCTGGCGAGAAAGAA GTGATCGAC CTG GTCGATTAC TTACTTACCAGTTGC ydgB 1654721 - 1655443 + | short chain dehydrogenase ydgC 1655775 - 1655440 - | hypothetical protein rstA 1655844 - 1656647 + | DNA-binding transcriptional regulator RstA TERM 2047 1656927 - 1656941 + G 71 -2.8 -4.86033 | overlap 1656929 ATCAAAAGAGCGAAT CCCTTT CCA AAAGTG TTTTTATCGCGATTT SFV_1624 1656872 - 1658191 + | putative transporter TERM 2048 1659322 - 1659286 - g 73 -3.6 -4.87665 | CGGTACGGATAAAAA CGCTCATGCAAGGCCA TTATG CGGCGTTGGATATGCG CTTAATGGAGCGCGT rstB 1658370 - 1659671 + | sensor protein RstB tus 1659747 - 1660676 + | DNA replication terminus site-binding protein fumC 1662076 - 1660673 - | fumarate hydratase TERM 2049 1661193 - 1661162 - G 76 -12.2 -2.50443 | gap 1, opp_overlap 1661161, overlap 1661161 TGAGATTTCACCAAT TCCGCAGCGCGGGCC AGA GGCCAGC-CAGCGGA CATCATTGGCGATTT TERM 2050 1662212 - 1662197 - R 100 -11.8 -5.47218 | opp_overlap 1662196 1662194 1662192 1662197 TGCCATGTAAAAAAA CCGCCC CGAA GGGCGG CTCTGTTTATTTCAC TERM 2051 1662197 - 1662212 + r 76 -11.8 -2.68607 | opp_overlap 1662197, overlap 1662196 1662194 1662192 TGCCATGTAAAAAAA CCGCCC CGAA GGGCGG CTCTGTTTATTTCAC fumA 1663865 - 1662219 - | fumarate hydratase class I, aerobic TERM 2052 1662839 - 1662854 + g 72 -4.7 -4.66163 | CAGGGATATATTTAC CTGGA TTATGT TCCAG TTTTTCGATCCAGAT TERM 2053 1663799 - 1663817 + g 74 -2.4 -5.08824 | GTTCACTGGTTAGCA GGTAATAC TCA GTATCATC TTTTTTGAGTGGAAA TERM 2054 1664274 - 1664313 + G 95 -15.2 -3.06583 | gap 1, opp_overlap 1664266, overlap 1664279 AAATCGACTCTGCTC GGAGAGGCCGTT-GCCAAA CGC TTTGGCGAACTGCCTTTCC TGTTCAAAGTATTAT TERM 2055 1664279 - 1664308 + G 81 -10.1 -3.92592 | gap 1, opp_overlap 1664266, overlap 1664274 GACTCTGCTCGGAGA GGCCGTT-GCCAAA CGC TTTGGCGAACTGCC TTTCCTGTTCAAAGT TERM 2056 1664545 - 1664565 + G 72 -9.7 -3.29973 | CCCTACTCCAGCCGG TCGCCGG TGCACAT CCGGCGA TTGCTCACTTTTTAC manA 1664064 - 1665239 + | mannose-6-phosphate isomerase TERM 2057 1665297 - 1665317 + F 95 -12.6 -4.27483 | opp_overlap 1665292 1665295 1665294 AGGCTTATAACACCT TCAGGCGG CCAGT CCGCCTGA TTTCATTTTATGGAT TERM 2058 1665867 - 1665850 - g 73 -4 -4.86773 | overlap 1665851 1665852 CAAAAGGATGAAAAA GTCGCC TTTAGC GGCGGC GAGTTCCAGTTAAAT TERM 2059 1666516 - 1666498 - g 74 -8.1 -4.04927 | gap 1 GCAACGACTAAAGAA GCGCC-GC AAAC GCTGGCGC AGGAAGTAGATCGTT ydgA 1665340 - 1666848 + | hypothetical protein TERM 2060 1666885 - 1666862 - T 89 -11 -4.1196 | opp_overlap 1666862, overlap 1666849 AATTCACGGCCAAAA CGCCGGAG AATTTTCA CTCCGGCG TTTTCATCTGAAAAC TERM 2061 1666862 - 1666885 + T 91 -11 -4.34402 | opp_overlap 1666849 1666862 AATTCACGGCCAAAA CGCCGGAG AATTTTCA CTCCGGCG TTTTCATCTGAAAAC TERM 2062 1667040 - 1667069 + T 87 -10 -4.3255 | opp_overlap 1667043, overlap 1667043 TTTGTCAACAATCTG AAACGCCGGAGG TTTTTC TCTCCGGCGTTA TTTCTTACTTCAGCA TERM 2063 1667043 - 1667066 + T 95 -11.7 -4.27694 | opp_overlap 1667043, overlap 1667040 GTCAACAATCTGAAA CGCCGGAGG TTTTTC TCTCCGGCG TTATTTCTTACTTCA TERM 2064 1667066 - 1667043 - T 86 -11 -3.72051 | opp_overlap 1667043 1667040 GTCAACAATCTGAAA CGCCGGAG GTTTTTCT CTCCGGCG TTATTTCTTACTTCA uidC 1668340 - 1667168 - | membrane-associated protein TERM 2065 1669298 - 1669332 + r 100 -14.3 -3.69395 | gap 1, opp_overlap 1669289 AATGAAGCGGCAATC CCACGAGC-CGCGCCC AGAC GGGCGCGAGATTGTGG TTGTTGGGTCATCGC TERM 2066 1669628 - 1669646 + r 72 -10.2 -2.81133 | opp_overlap 1669605 1669603 CCTGCCGCAGCGGCA CCGACGCC AGC GACGTCGG TGTAGTAACTCAATA uidA 1671560 - 1669749 - | beta-D-glucuronidase TERM 2067 1670345 - 1670358 + g 73 -3.8 -4.83169 | opp_overlap 1670345, overlap 1670343 CAATACTCCACATCA CCAC GCTTGG GTGG TTTTTGTCACGCGCT TERM 2068 1671414 - 1671436 + g 78 -7.6 -4.30719 | opp_overlap 1671413 CTGATCGTTAAAACT GCCTGGCACT GCA ATTGCCCGGC TTTCTTGTAACGCGC TERM 2069 1671936 - 1671910 - R 74 -8.7 -3.87318 | gap 1 AATTACGATATGAAA CGCGGGCACAGT TATC ACCA-GCCCGCG AAATGAGAGGATCAG uidR 1672538 - 1671948 - | repressor for uid operon insB 1673446 - 1672943 - | IS1 ORF2 TERM 2070 1673756 - 1673769 + r 81 -3.9 -5.40072 | CCCCCGGCGCAATGC TATTC ACCC GAATA TTTTTTTCACCCAGG TERM 2071 1674361 - 1674345 - R 84 -5.1 -5.3104 | opp_overlap 1674354 TCAGTAAAAATAAAA GGCAC CGCCTGT GTGCC ACATTTTTTATCATT TERM 2072 1674354 - 1674364 + r 85 -5.4 -5.37345 | opp_overlap 1674345 ATAAAAGGCACCGCC TGTG TGC CACA TTTTTTATCATTAAC malI 1675451 - 1674423 - | DNA-binding transcriptional repressor MalI TERM 2073 1675993 - 1675983 - g 72 -6.8 -4.24342 | TGGTTGACCAATAAA GGCA TTC TGCC AACCACAGATGCCGC TERM 2074 1676060 - 1676091 + G 74 -10.2 -3.47573 | gap 1 GATCCAGTCGATCGA TACCGG-GATCCTCG GTG CGGTGATCGCCGGTA TTATCGTCTGGATGC malX 1675626 - 1677218 + | bifunctional maltose and glucose-specific PTS system components IICB malY 1677249 - 1678400 + | cystathionine beta-lyase; maltose regulon modulator TERM 2075 1678400 - 1678441 + F 84 -8.7 -4.652 | overlap 1678401 CCGCGCTGTTCGCTA ACCCCAATTGCGCAACG TAAAAAAT CGTTGCGCAATCGTGGA TTTTTACCCTGCTTT TERM 2076 1678401 - 1678440 + F 85 -12.2 -3.38036 | overlap 1678400 CGCGCTGTTCGCTAA CCCCAATTGCGCAACG TAAAAAAT CGTTGCGCAATCGTGG ATTTTTACCCTGCTT TERM 2077 1679485 - 1679473 - g 75 -4.7 -4.80882 | AGCGCAGAGGAAAAA CGCGC ACT GCGAG AAAAAGTCGCCGCGA add 1678504 - 1679505 + | adenosine deaminase TERM 2078 1679536 - 1679512 - T 100 -17.3 -5.1963 | opp_overlap 1679512 GCGAAGTAACAAAAA TGGATGGTGCA AAT TGCACCATCCA TTTTTCACGCAAGGC TERM 2079 1679512 - 1679536 + T 100 -17.3 -4.56597 | opp_overlap 1679512 GCGAAGTAACAAAAA TGGATGGTGCA AAT TGCACCATCCA TTTTTCACGCAAGGC SFV_1641 1680515 - 1679541 - | putative oxidoreductase TERM 2080 1680904 - 1680926 + H 72 -6.3 -4.3208 | gap 1 GCACTTGTGGAGCGA CATGCTGCCC GTCC GGGT-GCATG TTTTCACTTGTCGGA SFV_1642 1681156 - 1681371 + | oriC-binding nucleoid-associated protein TERM 2081 1681495 - 1681514 + G 75 -7 -4.3014 | overlap 1681499 TATTGGAGGCTGGTT GCTTGGCC CGTT GGCCTGGC TTTTAGTCGCTCTGT SFV_1643 1681457 - 1681897 + | hypothetical protein SFV_1644 1681974 - 1682555 + | Na(+)-translocating NADH-quinone reductase subunit E SFV_1645 1682555 - 1683133 + | electron transport complex protein RnfB TERM 2082 1683174 - 1683158 - g 87 -4.5 -5.28176 | overlap 1683163 TGCATTCAGAAAAAA TAAAATC TGG GATTTCA ACGGCGGCATCCATC TERM 2083 1683210 - 1683163 - g 100 -5.5 -5.49579 | overlap 1683158 TCAGAAAAAATAAAA TCTGGGATTTCAACGGCGGCA TCCATC CACCGGAGATGAAAACCCAGA CCAACGGTACCCCCC TERM 2084 1683223 - 1683250 + G 86 -6.9 -4.90079 | overlap 1683224 1683225 AGACCAACGGTACCC CCCTGCGCCAG GTACTA CTGGCGCAGCA TTTTGTTATTCCACT TERM 2085 1683224 - 1683249 + G 74 -10.4 -3.52963 | overlap 1683223 1683225 GACCAACGGTACCCC CCTGCGCCAG GTACTA CTGGCGCAGC ATTTTGTTATTCCAC TERM 2086 1683225 - 1683248 + G 85 -13.9 -2.71055 | overlap 1683224 1683223 ACCAACGGTACCCCC CTGCGCCAG GTACTA CTGGCGCAG CATTTTGTTATTCCA TERM 2087 1683639 - 1683625 - g 72 -8.6 -3.80142 | GAGATAAGATTGAAA CGTTGA TTA TCAACG CTGCTGAGTGCGAGC TERM 2088 1685290 - 1685274 - g 82 -11.5 -3.54424 | opp_overlap 1685274, overlap 1685256 GTCGATCCGCGCAAA GCCGCAG TTG CCGCGGC TATTGCCCGCGTTCA SFV_1646 1683126 - 1685348 + | electron transport complex protein RnfC TERM 2089 1685443 - 1685459 + G 79 -2.2 -5.27477 | opp_overlap 1685443, overlap 1685444 CAGCCGTGCCAGGAA TCGCAG CGCAA CTGTGG TTTTTTGGTTGGGGT rnfD 1685349 - 1686407 + | electron transport complex protein RnfD SFV_1648 1686411 - 1687031 + | electron transport complex protein RnfG TERM 2090 1687425 - 1687401 - g 74 -3.4 -5.00616 | opp_overlap 1687401, overlap 1687402 TTCGCCGCCAAAAAA GGTCCGGCGC TTTCG GCACTGGACG GCTTTTCAATTGGTA TERM 2091 1687443 - 1687457 + G 72 -11.4 -2.50195 | overlap 1687442 1687441 1687444 TTTTCAATTGGTACG GGCGCA ACC TGCGCC ATGTTCGTGCTGGGT ydgQ 1687035 - 1687730 + | SoxR-reducing system protein RsxE nth 1687730 - 1688365 + | endonuclease III TERM 2092 1688391 - 1688372 - f 84 -8.6 -4.66987 | opp_overlap 1688371 1688372 GACATCTGAAGAAAA GGGGTAAC ACCG ATTACCCC ATTGATAACCTTTCT TERM 2093 1689017 - 1688997 - g 76 -4 -4.99134 | opp_overlap 1689001 1689007, overlap 1689001 1689002 1689008 ACTGCAAACCAAAAA CCAACTGA AAGCG TCAGTTTG AACGCTTTCAAACAA TERM 2094 1689028 - 1689001 - g 74 -8.6 -3.90592 | gap 1, opp_overlap 1689001 1689007 1689017 1689020, overlap 1688997 1689002 1689008 CAAACCAAAAACCAA CTGAAAGCG-TCA GTT TGAACGCTTTCAA ACAACCGAAGGCGTT TERM 2095 1690012 - 1690047 + G 70 -11.2 -2.7924 | gap 1, opp_overlap 1690004 1690003 1690001, overlap 1690009 1690007 ACAAGATGGGTGATA CCCTGCCGA-TGCCAAC CAA GTTTGCAATCGGCATGG TGATGTGTTCTGGTG tppB 1688976 - 1690478 + | putative tripeptide transporter permease TERM 2096 1690502 - 1690524 + F 100 -13.5 -6.09888 | opp_overlap 1690502 GAAACTCTTTTACAA GCCGCTAAC TTTTC GTTAGCGGC TTTTTTTTGTTCAGC TERM 2097 1690524 - 1690502 - f 86 -13.5 -3.30635 | opp_overlap 1690502 GAAACTCTTTTACAA GCCGCTAAC TTTTC GTTAGCGGC TTTTTTTTGTTCAGC TERM 2098 1690700 - 1690688 - g 84 -4.1 -5.28481 | opp_overlap 1690688 GATTTAATGAAAAAA CGTCT CGA AAACG GTGACGATTACTTTT TERM 2099 1690873 - 1690863 - g 70 -5.4 -4.36914 | TTTCCCGCTATAAAA CCAT CGA ATGG CTGAATTACATCGCC gst 1690583 - 1691188 + | glutathionine S-transferase pdxY 1692092 - 1691232 - | pyridoxamine kinase TERM 2100 1692141 - 1692112 - R 100 -10.7 -4.82901 | opp_overlap 1692115, overlap 1692113 1692115 TTCCCTGTATAAAAA CCAGGGGGAGTGA TTTC TCACTCCCCCTTT CCACTTAATGCATTA TERM 2101 1692140 - 1692113 - R 93 -14.2 -3.49419 | opp_overlap 1692115, overlap 1692112 1692115 TCCCTGTATAAAAAC CAGGGGGAGTGA TTTC TCACTCCCCCTT TCCACTTAATGCATT TERM 2102 1692115 - 1692138 + r 100 -16.8 -3.67976 | opp_overlap 1692113 1692112 1692115 CCTGTATAAAAACCA GGGGGAGTGA TTTC TCACTCCCCC TTTCCACTTAATGCA TERM 2103 1692138 - 1692115 - R 100 -16.8 -3.31915 | opp_overlap 1692115, overlap 1692113 1692112 CCTGTATAAAAACCA GGGGGAGTGA TTTC TCACTCCCCC TTTCCACTTAATGCA tyrS 1693428 - 1692154 - | tyrosyl-tRNA synthetase TERM 2104 1692536 - 1692553 + g 84 -4.1 -5.21506 | gap 1, overlap 1692511 1692508 1692533 1692537 AGTACATACTGGGCG C-GCGGTG CTT TACCGCTG TTTTTATCTTCTTCT TERM 2105 1692537 - 1692551 + g 76 -7.8 -4.20977 | overlap 1692511 1692508 1692533 1692536 GTACATACTGGGCGC GCGGTG CTT TACCGC TGTTTTTATCTTCTT pdxH 1694213 - 1693557 - | pyridoxamine 5'-phosphate oxidase TERM 2106 1693636 - 1693611 - G 73 -4 -4.83169 | gap 1 ACGCTGGTACAAAAA GCGGTCATGCA GGCGA TGC-TCACCGC CCTGCCAGAACTCAA TERM 2107 1693961 - 1693982 + g 81 -5.9 -4.78107 | gap 1, overlap 1693964 CTTTACGGCTACCGA GGT-TGGTGT AAA ACACCATGCC TTTTTCGTCGTAATG TERM 2108 1694141 - 1694156 + g 72 -7.5 -3.93262 | overlap 1694153 CGGCGGGAAGATCGC GGCGG CGTAAC CCGCC TTTGGTGTATTCACG ydhA 1694520 - 1694272 - | hypothetical protein SFV_1657 1695381 - 1694542 - | IS2 ORF2 SFV_1658 1695815 - 1695405 - | insertion sequence 2 OrfA protein anmK 1697144 - 1696035 - | anhydro-N-acetylmuramic acid kinase TERM 2109 1696161 - 1696199 + g 100 -16.8 -3.51924 | opp_overlap 1696175 AGCCAATGCTTCCAT GTCATCGCCACTAATGCC AAC GGCATCGGTGGTGGTGAC TTCTGTGCCTAGCAG slyB 1697418 - 1697885 + | putative outer membrane protein TERM 2110 1697925 - 1697890 - T 95 -11.8 -3.90744 | opp_overlap 1697890 1697887 1697879 CTCCGCGCTAAATAA GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC TTCATTTCACCCTTT TERM 2111 1697890 - 1697925 + T 86 -11.8 -3.5332 | opp_overlap 1697890, overlap 1697887 1697879 CTCCGCGCTAAATAA GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC TTCATTTCACCCTTT slyA 1698372 - 1697932 - | transcriptional regulator SlyA SFV_1662 1698576 - 1698803 + | hypothetical protein TERM 2112 1699472 - 1699458 - g 73 -4.2 -4.79955 | opp_overlap 1699458 ATAGTGATAACAAAA CGTTAC AGG GTCACG TTTCCAGTATCGGTC SFV_1663 1698797 - 1699663 + | hypothetical protein SFV_1664 1699663 - 1699989 + | hypothetical protein TERM 2113 1701582 - 1701603 + G 73 -11.5 -2.6914 | opp_overlap 1701581 1701580, overlap 1701581 1701583 CCGTCATCATCAACC TGCCGCCCG TGAG CTGGCGGCA ATTGTCTGGCGGCTG SFV_1665 1700161 - 1701675 + | hypothetical protein sodC 1702197 - 1701676 - | superoxide dismutase TERM 2114 1701713 - 1701723 + g 72 -8.2 -3.78329 | opp_overlap 1701694 TAGCGTTCACCGCCA CCGC CCA GCGG TTTAGGTTGATCGGA TERM 2115 1701924 - 1701951 + g 81 -11.2 -3.69902 | gap 1, opp_overlap 1701923 1701921, overlap 1701946 1701948 TTTGTGGATCAAGAT GCCCGC-CTGCGG ATT CCGCGGCGCTGGC TTTGCCATCTTTGGT SFV_1667 1703174 - 1702278 - | hypothetical protein SFV_1669 1703600 - 1703223 - | hypothetical protein SFV_1668 1703565 - 1704164 + | hypothetical protein TERM 2116 1704151 - 1704170 + FH 81 -4.9 -5.24129 | overlap 1704152 AAAACATTATTGCGA CGCCTGC CGTTTA GCAGGCA TTTTTTATCACCAGA TERM 2117 1704152 - 1704169 + FH 72 -8.4 -3.73995 | overlap 1704151 AAACATTATTGCGAC GCCTGC CGTTTA GCAGGC ATTTTTTATCACCAG nemA 1704201 - 1705298 + | N-ethylmaleimide reductase TERM 2118 1705657 - 1705644 - g 71 -2.3 -5.01732 | overlap 1705645 AAGCGTGCGAAAAAA TCCGT CAAA ACGGG GGTAACGTGACCCGT gloA 1705379 - 1705786 + | glyoxalase I TERM 2119 1705792 - 1705819 + F 73 -9.9 -3.46647 | gap 1, overlap 1705790 GGGCAACTAATCTCC TGCCGGGCGTGA ACTCA TCGCGCCCG-CA TCTTTACTGCATCGA TERM 2120 1705912 - 1705926 + G 77 -7.1 -4.45077 | opp_overlap 1705911 TAACGCTCAACTTAC CGGTC TGTGC GACCG TTTTCGTGGTTTTTA rnt 1705889 - 1706536 + | ribonuclease T TERM 2121 1707667 - 1707679 + GF 74 -6.9 -4.19624 | GATCTGGTGATTCAG GTGGC AAC GCCGC TTTCTGTTGCCAGTG lhr 1706668 - 1710045 + | ATP-dependent helicase superfamily protein TERM 2122 1710739 - 1710719 - gT 71 -9 -3.42283 | overlap 1710717 1710731 1710734 CAAGCCACGCAAACA CGCCACTA TACAC CAGTGGCG CTCTCCGCCAACGAT SFV_1674 1709990 - 1711087 + | ATP-dependent helicase superfamily protein SFV_1675 1712279 - 1711131 - | putative virulence protein TERM 2123 1711706 - 1711719 + g 86 -3.8 -5.41143 | overlap 1711693 1711691 GTCGCTGAAGTCTCG CCAG CGTCTT CTGG TTTTTTTGAAAACTG TERM 2124 1711994 - 1712025 + g 95 -10.2 -4.65895 | gap 1 CGAGCTTAACGCCCT GCGGGTAGCGGAATG CAT CATTCTG-TCCCCGC TTTTTGAATCGGGGA TERM 2125 1712052 - 1712064 + g 71 -3.4 -4.82901 | GGGAAAAGCAGCCCG CTTC CGGAA GAAG TTTTTGTAAGCCCGC TERM 2126 1712385 - 1712375 - R 76 -4.6 -5.04249 | CTGTGAAAAAAGAAA CCGA TAT CCGG CGTGGAAGGCATTGT TERM 2127 1712836 - 1712791 - R 76 -8.1 -4.11216 | opp_overlap 1712804, overlap 1712792 TGGTCAGGTGGAAAA CCGCGCCTTATATCCCCGCCC TGAA GGACGAGGTTTTACGGCGCAC CGGATAAAGGACTAA TERM 2128 1712835 - 1712792 - R 78 -11.6 -3.06515 | opp_overlap 1712804, overlap 1712791 GGTCAGGTGGAAAAC CGCGCCTTATATCCCCGCCC TGAA GGACGAGGTTTTACGGCGCA CCGGATAAAGGACTA TERM 2129 1712875 - 1712848 - R 78 -12.1 -3.01918 | opp_overlap 1712848 1712868, overlap 1712845 1712852 GCACCGGATAAAGGA CTAACGGATGC CCGTTC GCATCCGTCAG TATTGCAGGACGGAT TERM 2130 1712848 - 1712875 + r 70 -9.9 -3.01791 | opp_overlap 1712845 1712848 1712852, overlap 1712868 GCACCGGATAAAGGA CTAACGGATGC CCGTTC GCATCCGTCAG TATTGCAGGACGGAT TERM 2131 1712871 - 1712852 - R 70 -9.3 -3.35467 | opp_overlap 1712848 1712868, overlap 1712848 1712845 CGGATAAAGGACTAA CGGATGC CCGTTC GCATCCG TCAGTATTGCAGGAC ydhD 1713237 - 1712890 - | hypothetical protein TERM 2132 1713890 - 1713879 - g 70 -3.6 -4.63486 | overlap 1713866 1713865 ACGCCGTCAATAAAA CGGC CTCA GCCA GCTTTACCGAAAAGT TERM 2133 1713981 - 1713952 - g 90 -7.9 -4.81249 | gap 1 TGTGAAAGTCAAAAA TGCCGCGTCAGGAA CCC TTGCCGACGCG-CA CAAAGCGAAGGTGCA TERM 2134 1714014 - 1714001 - g 84 -8.1 -4.62471 | GCGAAGGTGCAAAAA GCCAC GAAA GTGGC AATGAATAAACTGAT ydhO 1713572 - 1714399 + | putative lipoprotein TERM 2135 1714432 - 1714402 - f 79 -9.2 -4.09511 | gap 1, opp_overlap 1714398 1714403 1714404, overlap 1714403 AACACTTCGCTAAAA CTTTACCCTGTTG TTACGG CAACAGGGT-AAG TTCATCTTTTGTCTC TERM 2136 1714403 - 1714432 + F 88 -12.3 -3.59432 | opp_overlap 1714402 1714403, overlap 1714398 1714404 ACACTTCGCTAAAAC TTTACCCTGTTGT TACG GCAACAGGGTAAG TTCATCTTTTGTCTC TERM 2137 1714404 - 1714431 + F 83 -13.6 -2.74575 | opp_overlap 1714402 1714403, overlap 1714403 1714398 CACTTCGCTAAAACT TTACCCTGTTGT TACG GCAACAGGGTAA GTTCATCTTTTGTCT sodB 1714527 - 1715108 + | superoxide dismutase TERM 2138 1715221 - 1715242 + T 100 -14.5 -5.38326 | opp_overlap 1715215 TGTCAGCAACTGTAA CGCAGAAGG TTAT CCTTCTGCG TTTTTGTTTAATTAG TERM 2139 1715270 - 1715286 + T 70 -5.1 -4.42653 | overlap 1715260 1715258 TAGCTGTTAGCAACG CAAACTG TTT CAGGTTG TTTTCTGGCTGACAT SFV_1679 1716423 - 1715254 - | putative transport protein TERM 2140 1716540 - 1716506 - H 72 -3 -4.96276 | ACAAAAAAATGAAAA TAACAAAAAGAGAAAA CAC TTTTGCCATTTTGCTA ACAAACAGGAAGGAG TERM 2141 1717026 - 1716992 - g 79 -4.4 -4.90079 | gap 1, opp_overlap 1716992, overlap 1716994 ATGGCAACAATAAAA GATGTAGC-GAAACG AGCAAA CGTTTCCACTACAAC TGTGTCACACGTGAT TERM 2142 1717074 - 1717050 - g 91 -9.3 -4.71828 | overlap 1717071 ACGTGATCAACAAAA CACGTTTCGTC GCT GAAGAAACGCG CAACGCCGTGTGGGC TERM 2143 1717514 - 1717502 - g 72 -10.5 -3.06796 | CGTTATCTGATTGAA CGCGG TCA CCGCG AAATCGGCGTCATCC TERM 2144 1717551 - 1717572 + G 81 -8.7 -4.37092 | gap 1, opp_overlap 1717551 1717549 CGCTGGAACGTAACA CCGGCGCAGG CCG CCT-TGCCGG TTTTATGAAGGCGAT TERM 2145 1717801 - 1717821 + G 74 -7.5 -4.07687 | opp_overlap 1717804 1717805, overlap 1717804 1717805 GCTGATCGGTTATGA TAACGTGCG CAA CGCGCGCTA TTTTACGCCGGCGCT TERM 2146 1717805 - 1717819 + G 73 -9.2 -3.63744 | opp_overlap 1717804 1717805, overlap 1717804 1717801 ATCGGTTATGATAAC GTGCGC AAC GCGCGC TATTTTACGCCGGCG purR 1716977 - 1718002 + | DNA-binding transcriptional repressor PurR ydhB 1718931 - 1717999 - | putative DNA-binding transcriptional regulator ydhC 1719044 - 1720255 + | inner membrane transport protein YdhC cfa 1720546 - 1721694 + | cyclopropane fatty acyl phospholipid synthase ribE 1722375 - 1721734 - | riboflavin synthase subunit alpha TERM 2147 1721933 - 1721909 - G 70 -3.5 -4.69027 | gap 1, overlap 1721901 1721910 1721911 AAATGGACGCAAAAA CGCGTTGGCG TGACTT CGCCGACG-G TCAGGCTAATACCGT TERM 2148 1722532 - 1722549 + H 80 -6.2 -4.85129 | overlap 1722547 CTGCTTCTTCTTTTT GCTGCC CATTCA GGCGGC TTTTTAGTCTCTCAT ydhE 1722590 - 1723963 + | multidrug efflux protein TERM 2149 1724002 - 1723968 - T 79 -9.4 -4.15044 | gap 1, opp_overlap 1723970 1723973, overlap 1723973 CGTCCCGCTAATAAA GACA-AGGCGCAACC TTCACG GGTTGCGCCTGTGTT TTTACGCAGGCTGGA TERM 2150 1723970 - 1724000 + T 100 -12.7 -4.57073 | gap 1, opp_overlap 1723968 1723973, overlap 1723973 TCCCGCTAATAAAGA CA-AGGCGCAACCT TCAC GGGTTGCGCCTGTG TTTTTACGCAGGCTG TERM 2151 1723973 - 1723996 + T 95 -14.6 -3.53855 | opp_overlap 1723968 1723973, overlap 1723970 CGCTAATAAAGACAA GGCGCAACCT TCAC GGGTTGCGCC TGTGTTTTTACGCAG TERM 2152 1723996 - 1723973 - T 100 -13.9 -3.96841 | opp_overlap 1723973 1723970, overlap 1723968 CGCTAATAAAGACAA GGCGCAACC TTCACG GGTTGCGCC TGTGTTTTTACGCAG SFV_1686 1725260 - 1724004 - | hypothetical protein TERM 2153 1724296 - 1724284 - G 74 -7.7 -4.09805 | opp_overlap 1724284 1724283 TTACCAACAATGAAA GTGAC GCT GTCAC CTTTTACCGTACTGC TERM 2154 1725437 - 1725426 - H 70 -2.2 -5.07486 | overlap 1725409 GATCCTGAATAAAAA TCGC CCTT GCAA ATCAACAAAATATAG TERM 2155 1725696 - 1725727 + H 80 -6.7 -4.76075 | gap 2, overlap 1725721 1725723 TTGACATGGTGGGGG TC-GGTG-GTTCGAG TCCA CTCGGACGCACCAGA TTTTCTTAATCTGGT TERM 2156 1725721 - 1725743 + H 76 -4.9 -4.78661 | overlap 1725696 1725723 GAGTCCACTCGGACG CACCAGATT TTCTT AATCTGGTC TTTTCCTTTTTCCCT TERM 2157 1725723 - 1725741 + H 71 -7.5 -3.99386 | overlap 1725696 1725721 GTCCACTCGGACGCA CCAGATT TTCTT AATCTGG TCTTTTCCTTTTTCC SFV_1689 1725833 - 1726138 + | hypothetical protein TERM 2158 1726138 - 1726120 - f 75 -9.6 -3.54676 | opp_overlap 1726116, overlap 1726116 ACTTAGTCAAATCAA TCAGGCAA AAC TCGCCTGA CAGAATTTAATCAAG TERM 2159 1726153 - 1726167 + F 79 -8.5 -4.3014 | opp_overlap 1726153 ACAGAATTTAATCAA GGGCG GTTAG CGCCC TTTTCATCCCTGTCT TERM 2160 1726444 - 1726418 - g 71 -2.2 -4.88222 | opp_overlap 1726423, overlap 1726419 1726421 AGGAAAACTCAAAAA TGATGCTGGCAA ATA TTGCCAGTATTG AAATACCGCCGATTA TERM 2161 1726423 - 1726439 + G 72 -10.9 -3.05844 | opp_overlap 1726421 1726419 1726418 AACTCAAAAATGATG CTGGCAA ATA TTGCCAG TATTGAAATACCGCC TERM 2162 1727674 - 1727657 - g 72 -4.9 -4.62002 | gap 1, opp_overlap 1727660, overlap 1727660 AGCAATTACAGAAAA CAGGGGAT GAA ATCCC-TG ATGTTGGCGAAGATT SFV_1690 1726264 - 1727868 + | hypothetical protein SFV_1691 1728629 - 1727880 - | hypothetical protein ydhU 1729466 - 1728681 - | hypothetical protein SFV_1693 1730131 - 1729463 - | putative oxidoreductase, Fe-S subunit SFV_1694 1730842 - 1730195 - | hypothetical protein SFV_1695 1732642 - 1730846 - | hypothetical protein TERM 2163 1730939 - 1730952 + g 70 -4.5 -4.55295 | opp_overlap 1730935, overlap 1730934 TGGACAACCAAGCTG TGGGT CCCA GCCCA TTTCTTTGTAGAACA TERM 2164 1732022 - 1732038 + g 75 -4.3 -4.87037 | opp_overlap 1732025, overlap 1732023 ACAACGGATCGGGCA AGAGTGG CAG CCGCTCA TTTTTACTGTGTATT SFV_1696 1733594 - 1732968 - | hypothetical protein TERM 2165 1733780 - 1733770 - R 86 -2.6 -5.67063 | opp_overlap 1733770 GTTAGGAGAAAAAAA TAAT GTG ATTA TTCTGAGCCCTTAAC TERM 2166 1734047 - 1734016 - R 77 -8.9 -3.83675 | gap 1, opp_overlap 1734013, overlap 1734018 CAACTGAAGCAAGAA TATCAGGATGAAGC TTACC GCCTCATCCTGA-A TGGTCATTTTACCAG TERM 2167 1734046 - 1734018 - R 93 -14 -3.4945 | opp_overlap 1734013, overlap 1734016 ACTGAAGCAAGAATA TCAGGATGAAGC TTACC GCCTCATCCTGA ATGGTCATTTTACCA SFV_1697 1734260 - 1734051 - | hypothetical protein insB 1734541 - 1735044 + | IS1 ORF2 TERM 2168 1736553 - 1736565 + G 81 -9.1 -4.08706 | opp_overlap 1736553 1736552 1736550 GCAAAAGGTAAATAC CCGCT GGA AGCGG TTTCTATCATGGCGA pykF 1735377 - 1737005 + | pyruvate kinase TERM 2169 1737054 - 1737038 - f 74 -10.8 -3.12847 | opp_overlap 1737038 AATTTGTATATCGAA GCGCCC CTGAT GGGCGC TTTTTTTATTTAATC TERM 2170 1737038 - 1737054 + F 100 -10.8 -5.99154 | opp_overlap 1737038 AATTTGTATATCGAA GCGCCC CTGAT GGGCGC TTTTTTTATTTAATC TERM 2171 1737479 - 1737454 - g 70 -9.7 -3.17212 | gap 1 TGACCAGCTGAGCAA CGACGTGAACGC AAT GCGTTC-CGACG TTCAGGCTGCTAAAG lpp 1737317 - 1737553 + | murein lipoprotein TERM 2172 1737593 - 1737575 - T 100 -14.6 -4.74103 | opp_overlap 1737575 CTGTGAAGTGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTCTGCTA TERM 2173 1737575 - 1737593 + T 100 -14.6 -5.74122 | opp_overlap 1737575 CTGTGAAGTGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTCTGCTA ynhG 1738620 - 1737616 - | hypothetical protein TERM 2174 1738450 - 1738471 + g 71 -2.1 -4.88388 | opp_overlap 1738451 1738453, overlap 1738451 TGCCGCAGTATCAAA ACGTCGGGC AATA GCCTGAAGG TTTTTATCCCCTTCT ynhA 1739185 - 1738769 - | cysteine desufuration protein SufE SFV_1703 1740418 - 1739198 - | selenocysteine lyase ynhC 1741581 - 1740415 - | cysteine desulfurase activator complex subunit SufD sufC 1742406 - 1741660 - | cysteine desulfurase ATPase component ynhE 1743903 - 1742416 - | cysteine desulfurase activator complex subunit SufB TERM 2175 1743564 - 1743553 - G 81 -7.2 -4.65895 | opp_overlap 1743552 CTCTTTACTTAAAAA GGCG TTCG CGCC AGTTTGCTGCACCGC sufA 1744280 - 1743912 - | iron-sulfur cluster assembly scaffold protein TERM 2176 1744573 - 1744603 + r 100 -19.2 -3.86897 | opp_overlap 1744573 TCAGAAATAAGAAAA CCCTTAAGTCTGTG CGA CACAGGCTTAAGGG TTTCTACCCCATCCG TERM 2177 1744603 - 1744573 - R 100 -17 -5.05116 | opp_overlap 1744573 TCAGAAATAAGAAAA CCCTTAAGTCTGTG CGA CACAGGCTTAAGGG TTTCTACCCCATCCG SFV_1708 1745097 - 1744828 - | hypothetical protein TERM 2178 1745073 - 1745038 - G 74 -9.8 -3.48276 | overlap 1745040 1745041 CTCGCTTTTAGACAA GACCTGCACAGTATAC CACC GTTTACTGTGCAGATA ATGACCAAAAGCAAT TERM 2179 1745071 - 1745040 - G 83 -12.4 -3.31726 | overlap 1745038 1745041 CGCTTTTAGACAAGA CCTGCACAGTATAC CACC GTTTACTGTGCAGA TAATGACCAAAAGCA TERM 2180 1745070 - 1745041 - G 84 -13.7 -2.58822 | overlap 1745040 1745038 GCTTTTAGACAAGAC CTGCACAGTATAC CACC GTTTACTGTGCAG ATAATGACCAAAAGC TERM 2181 1745151 - 1745124 - R 70 -4.8 -4.43859 | overlap 1745126 GACAACGTCACAAAA TGGCGGTCGTCA ATCG TGACGAACAGCA CAAACGCCCTTTCTC SFV_1709 1745526 - 1745116 - | hypothetical protein ydiJ 1748579 - 1745523 - | putative oxidase TERM 2182 1748181 - 1748160 - G 76 -3.7 -5.00616 | opp_overlap 1748174 TTCCGGCGCAAAAAA GTAGCCGAA CGGT TTCAGGTAC TGATTGAGTTGGTCT SFV_1711 1748968 - 1750080 + | putative inner membrane protein TERM 2183 1750088 - 1750108 + F 100 -16.9 -3.61715 | opp_overlap 1750081 1750082 1750077 ATAAGTAATTTCTCA TCAGGCGGC TCT GCCGCCTGA TTGTTAACACCGCTA TERM 2184 1750343 - 1750362 + F 100 -9.3 -5.82388 | CTGTGTGTAGTCTTT GCCCATC TCCCAC GATGGGC TTTTTTTTAACATTT SFV_1712 1750481 - 1750864 + | hypothetical protein insB 1752034 - 1752537 + | IS1 ORF2 SFV_1715 1753249 - 1754409 + | putative amino acid/amine transport protein SFV_1716 1754709 - 1754530 - | putative IS1 encoded protein insB 1754784 - 1755287 + | IS1 ORF2 TERM 2185 1755660 - 1755648 - g 70 -3.5 -4.66535 | opp_overlap 1755636 AAGGTTTAAAAGAAA TTAAA CTC TTTAA CCGTCGGGATGAGTT ydiB 1755314 - 1756063 + | quinate/shikimate dehydrogenase TERM 2186 1756799 - 1756784 - g 91 -5.4 -5.40072 | gap 1 GGTGCGGTAAAAAAA GCCTCTG CGC CAG-GGC AAATCTCGGTAAATG aroD 1756094 - 1756852 + | 3-dehydroquinate dehydratase TERM 2187 1756893 - 1756860 - T 84 -10.4 -3.86312 | overlap 1756892 AGGCATAAGCAATAA TATTTCGGCGGAAA TACCCT CCCCCGCCGAAATA AAAAAAGTATTTTTA insB 1757437 - 1756934 - | IS1 ORF2 SFV_1721 1757512 - 1757739 + | putative IS1 encoded protein SFV_1722 1757742 - 1759232 + | putative sulfatase TERM 2188 1759244 - 1759265 + F 82 -11.5 -3.61715 | opp_overlap 1759238, overlap 1759245 ATAACTAAACCTTCA TGCGGCGGA TTTT TCCGCCGCC TTATTGAGCGAGATA TERM 2189 1759245 - 1759264 + F 93 -15 -2.76815 | opp_overlap 1759238, overlap 1759244 TAACTAAACCTTCAT GCGGCGGA TTTT TCCGCCGC CTTATTGAGCGAGAT SFV_1723 1759284 - 1760441 + | putative enzyme TERM 2190 1760495 - 1760520 + T 83 -10.5 -3.80841 | opp_overlap 1760494 1760493 1760497 ATGACCTTAACAAGG CACCCGACA TAAATTCC TGTCGGGTG TTTCGTCATCATCAT TERM 2191 1760961 - 1760983 + T 76 -7.6 -4.2586 | GGCAGCTCGTTCTTT GGTTCCCTGC CCT GCTGGGGATC TTTGTATTAATATCC SFV_1725 1762167 - 1761931 - | putative IS1 encoded protein insB 1762242 - 1762745 + | IS1 ORF2 TERM 2192 1764971 - 1764955 - g 78 -7.9 -4.39989 | ATCAAATCAGCAAAA GCAGTCG TAC CGACAGC GCGACTAAAACCACC yddB 1763232 - 1765592 + | hypothetical protein TERM 2193 1766184 - 1766162 - f 82 -11.2 -3.62572 | opp_overlap 1766175 1766176, overlap 1766163 CATCAGGATGCGAAA TGGCGCACCT CTC AGGCGCGCCG CCCTTTCCTGCTGGC TERM 2194 1766183 - 1766163 - f 87 -14.7 -2.77222 | opp_overlap 1766175 1766176, overlap 1766162 ATCAGGATGCGAAAT GGCGCACCT CTC AGGCGCGCC GCCCTTTCCTGCTGG insB 1766895 - 1767398 + | IS1 ORF2 TERM 2195 1768381 - 1768362 - f 73 -7.8 -4.08767 | overlap 1768348 1768347 TTCAGGCGTTGAAAA CGCTCGAC CAGC GTCCAGCG GAGAAATTCGCCCAG TERM 2196 1768699 - 1768678 - f 85 -6.7 -5.093 | gap 1, opp_overlap 1768682, overlap 1768682 TGTAAAAGAACAAAA TGA-ACCTGT GGC ACAGGTTTCA CAGTGGAAGCGTTAT TERM 2197 1768694 - 1768682 - f 71 -7.7 -3.89307 | opp_overlap 1768682, overlap 1768678 AAAGAACAAAATGAA CCTGT GGC ACAGG TTTCACAGTGGAAGC TERM 2198 1769246 - 1769210 - f 76 -8.7 -4.18506 | opp_overlap 1769215 1769216 1769245, overlap 1769213 1769216 TTATTGCCAAAATAA TAACAGCCCCGTCAACA CAT CGTTGGCGGGGATTTTA GCAATATTCGCTATT TERM 2199 1769215 - 1769241 + F 83 -10.1 -4.14472 | opp_overlap 1769213 1769210 1769216, overlap 1769216 GCCAAAATAATAACA GCCCCGTCAAC ACATC GTTGGCGGGGA TTTTAGCAATATTCG TERM 2200 1769216 - 1769240 + F 85 -13.6 -3.08201 | opp_overlap 1769213 1769210 1769216, overlap 1769215 CCAAAATAATAACAG CCCCGTCAAC ACATC GTTGGCGGGG ATTTTAGCAATATTC TERM 2201 1769240 - 1769216 - f 77 -12.1 -2.80636 | opp_overlap 1769216 1769215, overlap 1769213 1769210 CCAAAATAATAACAG CCCCGTCAACA CAT CGTTGGCGGGG ATTTTAGCAATATTC TERM 2202 1769245 - 1769259 + F 72 -2.8 -5.01497 | opp_overlap 1769210 CGTTGGCGGGGATTT TAGCAA TAT TCGCTA TTTTTATGTAATAAT TERM 2203 1770299 - 1770313 + G 78 -9.2 -3.86822 | overlap 1770307 GACATGCACATCGAC GCCGCC AGC GGTGGC TTTCTGGCACCGTTC gadB 1769570 - 1770970 + | glutamate decarboxylase isozyme TERM 2204 1770989 - 1771018 + F 82 -11.5 -3.57387 | opp_overlap 1771000 1771004, overlap 1770992 CGTTTAACGGTAACG GTGTCCCGAAACG AACC CGTTTCGGGATAA TTTCCAAAGTCTGTT TERM 2205 1770992 - 1771015 + F 93 -15.4 -2.91322 | opp_overlap 1771000 1771004, overlap 1770989 TTAACGGTAACGGTG TCCCGAAACG AACC CGTTTCGGGA TAATTTCCAAAGTCT TERM 2206 1771084 - 1771056 - f 76 -7.6 -4.30416 | overlap 1771058 ATTAGCAACGGAAAA TATTGTTCTGAA TACGC TTCAGAACAAAA CAGGTGCGGTTCCGA TERM 2207 1771082 - 1771058 - f 83 -10.2 -3.75051 | overlap 1771056 TAGCAACGGAAAATA TTGTTCTGAA TACGC TTCAGAACAA AACAGGTGCGGTTCC TERM 2208 1771259 - 1771276 + G 75 -5.5 -4.67256 | TTTCATTAGTCTTCT TCCTGCT ATTA GGCGGGA TTTTATGGTTTATTC TERM 2209 1772107 - 1772094 - g 71 -3.1 -4.8667 | gap 1, opp_overlap 1772099, overlap 1772095 1772096 CACAGCGCAGAAAAA CCTGCT GCC AGC-GG CATTCGCTAAAATGA xasA 1771126 - 1772661 + | acid sensitivity protein, putative transporter TERM 2210 1772687 - 1772709 + F 100 -13.5 -4.81685 | opp_overlap 1772687 ATGGTTATAAGACAA GGGAGCGAT AATTC ATCGCTCCC TTTTTCGTGCTTACT TERM 2211 1772709 - 1772687 - f 100 -14.2 -3.75378 | opp_overlap 1772687 ATGGTTATAAGACAA GGGAGCGATA ATT CATCGCTCCC TTTTTCGTGCTTACT SFV_1732 1772792 - 1774111 + | hypothetical protein TERM 2212 1774126 - 1774166 + F 85 -12.7 -3.34962 | opp_overlap 1774136, overlap 1774127 1774136 AACTACCATGCTTAC TTTGTAACAAGCCGGTG CTTTACC CACCGGCTTGTTACACC TTGTGAAATATCCCA TERM 2213 1774127 - 1774165 + F 90 -16.2 -2.60763 | opp_overlap 1774136, overlap 1774126 1774136 ACTACCATGCTTACT TTGTAACAAGCCGGTG CTTTACC CACCGGCTTGTTACAC CTTGTGAAATATCCC TERM 2214 1774136 - 1774156 + F 79 -9.7 -3.66028 | opp_overlap 1774136, overlap 1774127 1774126 CTTACTTTGTAACAA GCCGGTG CTTTACC CACCGGC TTGTTACACCTTGTG TERM 2215 1774156 - 1774136 - f 75 -9.7 -3.62597 | opp_overlap 1774136 1774127 1774126 CTTACTTTGTAACAA GCCGGTG CTTTACC CACCGGC TTGTTACACCTTGTG TERM 2216 1774429 - 1774439 + F 74 -6.8 -4.27062 | GCAGTTAGTCGATCT CGCA CGT TGCG TTTCGTTTTGATTCC SFV_1733 1774488 - 1775633 + | hypothetical protein TERM 2217 1775949 - 1775931 - g 70 -4.6 -4.5852 | opp_overlap 1775931, overlap 1775933 TAACGGAAATCAAAA TTGACAAA AGC TTTGTCGA TCGTTGTCTGACGGA SFV_1734 1775675 - 1776175 + | putative enzyme TERM 2218 1776189 - 1776202 + F 93 -9.5 -4.55798 | GACAAATTCCTCTCG CCCGC ACTC GCGGG TTTTCCTTTAAGGTG SFV_1735 1776433 - 1776834 + | hypothetical protein TERM 2219 1777232 - 1777242 + GF 77 -6.8 -4.41616 | GCACTGGCTGCCGCT CTCG GGC CGAG TTTATTTAACGCCAT SFV_1736 1776779 - 1777675 + | ATP-dependent peptide transporter membrane subunit SFV_1737 1777672 - 1778658 + | putative ATP-binding component of a transport system SFV_1738 1778651 - 1779421 + | putative ATP-binding component of a transport system TERM 2220 1779461 - 1779471 + T 73 -2.4 -5.24129 | opp_overlap 1779451 GGAAACCGCACGTTG CCGC AAG GCTG TTTTTTCTACGAACG TERM 2221 1779617 - 1779590 - T 86 -11.3 -3.67558 | TAGAGATGCTAACAA CGCATCAGGCA TTCACG CGCCTGACGCG TCATCCGGCAATGCT osmC 1780064 - 1779633 - | osmotically inducible protein insB 1780740 - 1780237 - | IS1 ORF2 TERM 2222 1781004 - 1781025 + G 100 -13.1 -5.06585 | opp_overlap 1781004 CCAATGACGATTAAA CACCATTGC CTGC GCAATGGTG TTTTTATCTGCTTTA TERM 2223 1781025 - 1781004 - g 100 -13.1 -3.82031 | opp_overlap 1781004 CCAATGACGATTAAA CACCATTGC CTGC GCAATGGTG TTTTTATCTGCTTTA SFV_1741 1780815 - 1781081 + | putative IS1 encoded protein TERM 2224 1781486 - 1781496 + G 72 -6.8 -4.2074 | overlap 1781479 AGATCTACCGCCGTT CACG CGG CGTG TTTATCTCTTACCAG TERM 2225 1781905 - 1781877 - g 95 -6.8 -5.40072 | gap 1 CTTTGCTCAAAAAAA TGCGAT-GCCGTT ACTT AACCGCTATCGCA ATGAAATTTGTTCTT TERM 2226 1782522 - 1782539 + G 78 -10.5 -3.49048 | overlap 1782520 CAACGCCTTTATTTT CCCGGGC ATCG GCCTGGG TGTTATTGCTTCCGG sfcA 1781122 - 1782819 + | malate dehydrogenase TERM 2227 1782826 - 1782849 + F 70 -8.8 -3.4404 | opp_overlap 1782820, overlap 1782825 1782827 TCCATCTAAGCCTGC ACCCGGTAGT GAAG GCTACCGGGC TATTTCCCTCTCCCT TERM 2228 1782827 - 1782848 + F 78 -12.3 -2.65942 | opp_overlap 1782820, overlap 1782826 1782825 CCATCTAAGCCTGCA CCCGGTAGT GAAG GCTACCGGG CTATTTCCCTCTCCC yddM 1784047 - 1784409 + | hypothetical protein TERM 2229 1784433 - 1784414 - T 91 -6.4 -5.4833 | TTACGCAATAAAAAA TGGCACCT TATA AAGCGCCA TTTGAAACTGATGAC TERM 2230 1784617 - 1784586 - T 86 -13.9 -3.21395 | opp_overlap 1784592, overlap 1784592 ACGTTGTCTACAATA TGAAAATGGCGCC TTTTAC AGCGCCATTTTCA GCTTAAAGTTCAAAA TERM 2231 1784611 - 1784592 - T 77 -7.1 -4.46656 | opp_overlap 1784592, overlap 1784586 TCTACAATATGAAAA TGGCGCC TTTTAC AGCGCCA TTTTCAGCTTAAAGT fdnI 1785290 - 1784637 - | formate dehydrogenase-N subunit gamma TERM 2232 1785151 - 1785101 - G 72 -6.6 -4.26076 | opp_overlap 1785099 1785137, overlap 1785087 1785084 TCAGTGCGACGAAAA TCGCAATGCCGAAGAAGGGGTGCA AAA TGCGTCCCATCTGCGGCGTACCGA AGGTTTGCGTCAGCC fdnH 1786167 - 1785283 - | formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit TERM 2233 1785381 - 1785393 + g 71 -9.1 -3.5394 | opp_overlap 1785376 1785380, overlap 1785390 TGGCAATAAAGCCAG CCGCT GCC AGCGG TTTCAACGCGCCTTT fdnG 1789227 - 1786180 - | formate dehydrogenase-N, nitrate-inducible, alpha subunit TERM 2234 1788212 - 1788237 + g 70 -3.9 -4.60487 | overlap 1788213 1788214 1788233 TCATCGAACTGATAG TTCCAGGACGA TTTG TCGTACTGGCG TTTTTCAGCGTCATA TERM 2235 1788453 - 1788481 + g 90 -7.6 -4.75174 | gap 1 GCGTAAAACGGGGAT CGACAACGAT-CA AGGT TGCATCGTTGTTG TTTTTCGCTTCCATC TERM 2236 1789006 - 1789018 + g 71 -2.6 -5.02074 | overlap 1788997 TTCAATGTGATAAAT CGCT TCTCT GGCG TTTTTTGCGCCATCA yddG 1789516 - 1790340 + | hypothetical protein TERM 2237 1790371 - 1790343 - T 95 -11.7 -4.07687 | opp_overlap 1790346, overlap 1790346 1790347 ACGTCGTGGTTAAAA TAATTGCCGGGTC TAC GGCCCGGCAGTTA ATCAGATAAATTCCG TERM 2238 1790346 - 1790368 + T 83 -13.4 -3.1706 | opp_overlap 1790343 1790346 1790347 TCGTGGTTAAAATAA TTGCCGGGTC TAC GGCCCGGCAG TTAATCAGATAAATT TERM 2239 1790368 - 1790346 - T 79 -9 -4.17048 | opp_overlap 1790346, overlap 1790343 1790347 TCGTGGTTAAAATAA TTGCCGGGTC TAC GGCCCGGCAG TTAATCAGATAAATT TERM 2240 1790367 - 1790347 - T 80 -12.5 -3.09908 | opp_overlap 1790346, overlap 1790346 1790343 CGTGGTTAAAATAAT TGCCGGGTC TAC GGCCCGGCA GTTAATCAGATAAAT insB 1791046 - 1790543 - | IS1 ORF2 SFV_1750 1791121 - 1791309 + | putative IS1 encoded protein SFV_1751 1791372 - 1792472 + | putative outer membrane porin protein TERM 2241 1792486 - 1792505 + F 100 -10.7 -5.00138 | AACGTCCTCTCCTGA CCAGCCC TTCTCT GGGCTGG TTTTTGATTTAAGTG SFV_1752 1792642 - 1793121 + | hypothetical protein TERM 2242 1794198 - 1794184 - g 71 -2.2 -4.91573 | opp_overlap 1794185, overlap 1794185 AAAACAGAGCAAAAA CTTAAA TTT TTTAAA TGTTTCTGGGAAGAA SFV_1753 1793231 - 1794220 + | putative glycoprotein SFV_1754 1794627 - 1794394 - | putative IS1 encoded protein TERM 2243 1794459 - 1794442 - G 76 -4.1 -4.89729 | TATAAAAGTTAAAAA CATGACC TTAG GGTAATG CTGCCAACTTACTGA insB 1794702 - 1795205 + | IS1 ORF2 TERM 2244 1796671 - 1796693 + G 72 -8.5 -3.79021 | gap 1 CTGCTGTTCCTTACC TTACCGG-GC ACAG GCTCCGGTAA TTTCATCGCCTTTTA TERM 2245 1796893 - 1796907 + G 85 -2.7 -5.4505 | TTTATCTCAGCCATT GGCGC AGTGG GCGGC TTTTTTATTCCGCAG narU 1795663 - 1797051 + | nitrite extrusion protein 2 TERM 2246 1797419 - 1797400 - g 74 -10.6 -3.27298 | opp_overlap 1797394 CTGCCCAATCATGAA CCTCGCGG CTGC CCGCGTGG CGCAAGTTACTCCTG TERM 2247 1798050 - 1798030 - g 77 -9.7 -3.64703 | overlap 1798033 TGGCTGGCACCGAAA CAAGGCACT GAT AGCGCCCTG GCGATGGCAATGGGG TERM 2248 1798047 - 1798033 - g 72 -7.8 -3.96216 | overlap 1798030 CTGGCACCGAAACAA GGCACT GAT AGCGCC CTGGCGATGGCAATG TERM 2249 1798356 - 1798330 - g 75 -4.5 -4.82901 | gap 1 CGCTGGGGAGAAAAA GGCAAATGGAAT CTGG AATCCATT-GCC GCCGGTACGGAAACC narZ 1797133 - 1800873 + | cryptic nitrate reductase 2, alpha subunit narY 1800870 - 1801802 + | putative cryptic nitrate reductase 2, beta subunit TERM 2250 1801958 - 1801944 - g 74 -10 -3.44284 | opp_overlap 1801943 1801944, overlap 1801942 TTTTGACGAAGAAGA CGCAGA AGT TCTGCG CTTTGATAGTTTTGA SFV_1759 1801837 - 1802202 + | putative IS91 ORF2 TERM 2251 1802289 - 1802268 - f 71 -7.2 -4.06419 | opp_overlap 1802265 TGGCTGGAGAAACAA CCGGAAGG GGCAGT CCGTCCGG TGGTAATTGAATCAG TERM 2252 1802614 - 1802599 - g 73 -9 -3.63805 | ATGTGATACTGGAAA TCTGCC ATCA GGCAGA TGTGGAGCCGGGGAC SFV_1760 1802316 - 1803389 + | IS91 orf TERM 2253 1803634 - 1803653 + T 89 -11.4 -4.06903 | opp_overlap 1803629 TGAGTAATTACTTGA TGCCCGGT ATTT GCCGGGCA TTTAATTTAACGATT SFV_1761 1804325 - 1803660 - | putative DNA-binding transcriptional regulator TERM 2254 1804458 - 1804486 + r 70 -9.1 -3.34895 | opp_overlap 1804461 1804467 1804473, overlap 1804461 1804466 1804467 AATGACGTGGTTAGT TAATTAAAACTGA AAT TCAGCTTTAATTA TTAATTAAAGCTGAA TERM 2255 1804466 - 1804508 + r 72 -5 -4.69027 | opp_overlap 1804461 1804467 1804473, overlap 1804461 1804458 1804467 GGTTAGTTAATTAAA ACTGAAATTCAGCTTTAATT ATT AATTAAAGCTGAAAATAAGC TTTTTGCCTGGATTT TERM 2256 1804507 - 1804467 - R 81 -8.5 -4.43477 | opp_overlap 1804461 1804458 1804466 1804467, overlap 1804461 1804473 GTTAGTTAATTAAAA CTGAAATTCAGCTTTAATT ATT AATTAAAGCTGAAAATAAG CTTTTTGCCTGGATT TERM 2257 1804501 - 1804473 - R 100 -14.9 -3.96452 | opp_overlap 1804461 1804458 1804467 1804466, overlap 1804461 1804467 TAATTAAAACTGAAA TTCAGCTTTAATT ATT AATTAAAGCTGAA AATAAGCTTTTTGCC yncB 1805590 - 1804487 - | putative oxidoreductase TERM 2258 1804520 - 1804551 + g 74 -5.8 -4.46212 | overlap 1804521 AAGCTTTTTGCCTGG ATTTTTATGGCGGC TTAC GCCGCCGTTGAAAC TTTTATCATCACCCG SFV_1763 1806625 - 1805720 - | insertion element IS2 transposase InsD SFV_1764 1806948 - 1806583 - | insertion sequence 2 OrfA protein SFV_1766 1807423 - 1808070 + | hypothetical protein SFV_1767 1808304 - 1808071 - | hypothetical protein SFV_1768 1808638 - 1808390 - | hypothetical protein TERM 2259 1808610 - 1808592 - G 71 -3.1 -4.75472 | gap 1, opp_overlap 1808594 1808595, overlap 1808593 1808594 GCCATATGAATAAAA CGCGCGCA AATA TGCGC-CA TTTTTTGACGTGCAT SFV_1769 1810064 - 1809255 - | putative acetyltransferase TERM 2260 1810267 - 1810236 - R 76 -8 -4.32482 | overlap 1810237 1810239 ACTCAGAACCTAAAA CGATAGTGGCCGTC CTAT AACAGCCACTAACA TCTAACTTAATGTTT TERM 2261 1810264 - 1810239 - R 74 -10.5 -3.14977 | overlap 1810237 1810236 CAGAACCTAAAACGA TAGTGGCCGTC CTAT AACAGCCACTA ACATCTAACTTAATG SFV_1770 1811698 - 1810274 - | gamma-aminobutyraldehyde dehydrogenase SFV_1771 1812514 - 1811720 - | putative transport system permease protein TERM 2262 1812103 - 1812090 - G 70 -3.8 -4.68994 | ACCACTACGCAAAAA GTCG CATGAC CGAC CACGATGGTGAAAAA TERM 2263 1812840 - 1812820 - H 75 -9.7 -3.54919 | overlap 1812808 AATGACGGCGGCAAA CGCTCAAGC GCC GCCTGAACG GGCAGGATCATCGAG TERM 2264 1813440 - 1813419 - g 70 -7.2 -4.06419 | opp_overlap 1813416 TGGCTGGAGAAACAA CCGGAAGG GGCAGT CCGTCCGG TGGTAATTGAATCAG TERM 2265 1813765 - 1813750 - g 73 -9 -3.63805 | ATGTGATACTGGAAA TCTGCC ATCA GGCAGA TGTGGAGCCGGGGAT SFV_1773 1813194 - 1814540 + | IS91 orf SFV_1774 1815561 - 1814629 - | putative virulence protein TERM 2266 1814988 - 1815001 + g 73 -3.8 -4.83615 | overlap 1814975 1814973 GTCGCTGAAGTCTCG CCAG CGTCTT CTGG TTTTTCTGAAAACTG TERM 2267 1815276 - 1815307 + g 95 -10.2 -4.65895 | gap 1 CGAGCTTAACGCCCT GCGGGTAGCGGAATG CAT CATTCTG-TCCCCGC TTTTTGAATCGGGGA TERM 2268 1815334 - 1815346 + g 71 -3.4 -4.82901 | GGGAAAAGCAGCCCG CTTC CGGAA GAAG TTTTTGTAAGCCCGC TERM 2269 1815667 - 1815657 - R 76 -4.6 -5.04249 | CTGTGAAAAAAGAAA CCGA TAT CCGG CGTGGAAGGCATTGT TERM 2270 1816082 - 1816101 + r 71 -7 -4.07568 | opp_overlap 1816070 1816069 AACCGCGCCTTATAT CCCCGCCC TGAA GGATGGGG TTTTACGGCGCACCG TERM 2271 1816144 - 1816125 - R 100 -13.6 -4.85599 | CGCACCGGATAAAAA GCGCCATC TAAC GATGGCGC GTCTGGAACTACTTT SFV_1775 1816821 - 1816153 - | hypothetical protein TERM 2272 1816557 - 1816581 + g 78 -8.6 -4.2558 | opp_overlap 1816557 AAATTTTATCCAGAA CTTTCTGCCC TACCT GGGTAGAAGG TTTTGGTACCGGATA TERM 2273 1816679 - 1816668 - G 70 -5.8 -4.28774 | opp_overlap 1816668 CTACCCAACGTAAAA CAGG TTTA CCTG TTGCTGAGGTTGTTT TERM 2274 1816740 - 1816724 - G 79 -3.7 -5.03145 | TAATTGTTTAAAAAA CCAGA ATATTTA TCTGG CTGGGTGATTTTAGA tehB 1817717 - 1817124 - | tellurite resistance protein TehB TERM 2275 1817178 - 1817207 + g 73 -9.2 -3.58428 | AATACGATTACCGTT GGCGTCGGTGCG GTGCAG CTCGCCGACGTC TTCATTGTATTTCAC tehA 1818706 - 1817714 - | potassium-tellurite ethidium and proflavin transporter TERM 2276 1818224 - 1818206 - G 72 -5.3 -4.56597 | gap 1, overlap 1818208 GCCTGCGCCTAAAAA CACCAGAC CGGC GTC-GGTG TAGCCCAACGCACCA TERM 2277 1819379 - 1819391 + G 77 -3.3 -5.0925 | opp_overlap 1819379 TATGCTTTTATTGAA CATCG CGC CGAAG TTTTTGATTTTGCCA SFV_1778 1818830 - 1819810 + | hypothetical protein rimL 1820341 - 1819805 - | ribosomal-protein-L7/L12-serine acetyltransferase TERM 2278 1819932 - 1819896 - G 74 -6.5 -4.5442 | opp_overlap 1819900 1819908 1819930, overlap 1819897 1819900 CCTTCAAGGATAAAA CCATTGCGCAAAGCGAC CTG GTTGCTTTGCGGATTGT CCACCCGACATTTGA TERM 2279 1819931 - 1819897 - G 72 -10 -3.3217 | opp_overlap 1819900 1819908 1819930, overlap 1819896 1819900 CTTCAAGGATAAAAC CATTGCGCAAAGCGAC CTG GTTGCTTTGCGGATTG TCCACCCGACATTTG TERM 2280 1819900 - 1819928 + g 83 -12.5 -3.28791 | opp_overlap 1819897 1819896 1819900, overlap 1819908 CAAGGATAAAACCAT TGCGCAAAGCGAC CTG GTTGCTTTGCGGA TTGTCCACCCGACAT TERM 2281 1820393 - 1820377 - R 100 -10.8 -5.00616 | GCTGTTGTTAAAAAA GCCGCC TGGCT GGCGGC TTAGGAAAGTTTACA TERM 2282 1820423 - 1820435 + r 73 -7.7 -4.13282 | ACCTCTTTGACGCTC TCCTG CTG CAGGA TTTTGAGCATCTCAT ydcH 1820628 - 1820404 - | hypothetical protein TERM 2283 1820755 - 1820732 - R 87 -14.6 -2.90075 | TCGTGTTTAACCAGA CGGCACCTCC CGAA GAAGGTGCCG AAGAAAAAACGATTA mdoD 1822393 - 1820768 - | glucan biosynthesis protein D TERM 2284 1821957 - 1821945 - G 72 -6.9 -4.21827 | opp_overlap 1821946 1821947, overlap 1821946 TTAAACACGCGAAAA CCGGC AAA GCCGA GATCGCTTTGCCCTT SFV_1782 1823991 - 1822648 - | hypothetical protein TERM 2285 1823633 - 1823616 - G 75 -5.5 -4.7078 | GTAAGGATGTAAAAA CGCGGAA GGGA TTACGCG CCAGAGAAGCATCAT SFV_1783 1824067 - 1825131 + | LysR family transcriptional regulator trg 1826809 - 1825169 - | methyl-accepting chemotaxis protein III, ribose sensor receptor TERM 2286 1826079 - 1826091 + g 95 -9.1 -5.10497 | TCATTCATCGTCAGA TCGCC ACT GGCGA TTTTTTCAATCCGTT TERM 2287 1827357 - 1827341 - g 76 -3.7 -4.92363 | AAACATGGAGAAAAA GGTTTAA TTC CCAAACC TAAAGGCGTTAGTGC SFV_1785 1827185 - 1827667 + | IS150 ORF1(ORF A) SFV_1786 1828377 - 1827664 - | IS600 ORF2 SFV_1787 1828820 - 1828518 - | IS600 ORF1 TERM 2288 1829076 - 1829044 - R 93 -10.7 -4.55128 | opp_overlap 1829044 AGCCTGAAATTAAAA GGTCTGACTCCAA ATGAATA TCGGAATCAGACC TATATGCCTCGTGTT ydcA 1829589 - 1829416 - | hypothetical protein TERM 2289 1829560 - 1829545 - G 70 -5.4 -4.38712 | GGCATCGGCATAAAA GGAAAC AAGC GTTCCC ATAAACAAAATAAGT TERM 2290 1829784 - 1829816 + r 78 -4.9 -4.92385 | overlap 1829783 1829786 TAGACCCGTATTCTT CGCCTGTACCA CGGGTCGGTTT TAGTACAGGCG TTTTCTTTAAATATC cybB 1830364 - 1829834 - | cytochrome b561 gapC 1830553 - 1831488 + | glyceraldehyde-3-phosphate dehydrogenase TERM 2291 1831561 - 1831586 + T 83 -10.4 -3.71527 | overlap 1831563 AAACTCTGACGCGCA CAGGCGGAGG AAAAAA CCTCCGCCTC TTTCACTCATTAAGA TERM 2292 1831563 - 1831584 + T 86 -13 -3.43853 | overlap 1831561 ACTCTGACGCGCACA GGCGGAGG AAAAAA CCTCCGCC TCTTTCACTCATTAA aldA 1833035 - 1831596 - | aldehyde dehydrogenase A TERM 2293 1833192 - 1833228 + r 82 -8 -4.62069 | overlap 1833193 TAAAAGTCAGGAGTC ATGCCCGTTTGCAAAC AAGTG GTTCACAAACGGGCAA TTTTTAACGTAACGA TERM 2294 1833193 - 1833227 + r 79 -11.5 -3.3692 | overlap 1833192 AAAAGTCAGGAGTCA TGCCCGTTTGCAAAC AAGTG GTTCACAAACGGGCA ATTTTTAACGTAACG SFV_1792 1833726 - 1833340 - | hypothetical protein SFV_1793 1833827 - 1834972 + | IS600 ORF2 hrpA 1838928 - 1835173 - | ATP-dependent RNA helicase HrpA TERM 2295 1836338 - 1836295 - G 72 -5.2 -4.57073 | opp_overlap 1836293 1836294 1836295 GACGCGGCCTAAAAA CGCTTCGGCGTAGTTTGGTG CAGG CACAAAATTACGGCGTACCG GTTTCGGCAACGATT TERM 2296 1837422 - 1837443 + g 71 -2.9 -4.7373 | overlap 1837427 CGAGGAAGTCGGATT CTTTGTCGT GGAA GCGACGATG TTTTTCGTCCGATGC TERM 2297 1839080 - 1839106 + H 75 -3.1 -5.10933 | gap 1, overlap 1839086 TGTTCTGTCATAACG TTAGT-GGGCAG TAGT CTGCCTGATTAA TTTTCTTTTAAATGA acpD 1839276 - 1839881 + | azoreductase SFV_1796 1840644 - 1840946 + | IS600 ORF1 SFV_1797 1841087 - 1841800 + | IS600 ORF2 SFV_1799 1844259 - 1842502 - | hypothetical protein SFV_1800 1844997 - 1844275 - | putative phosphatidate cytidiltransferase TERM 2298 1844320 - 1844308 - G 100 -3.3 -6.17669 | AATAAAATAAAAAAA TACCG GAG CGGTG AAAATTAATGAGTCA TERM 2299 1844946 - 1844927 - G 70 -3.6 -4.68506 | opp_overlap 1844927 AACCAACGCGAAAAA TGTACG GATATAAG CGTACA ATATTCTTTCAATGC SFV_1801 1845775 - 1845170 - | hypothetical protein TERM 2300 1845602 - 1845592 - G 71 -2.4 -4.89852 | CCATACGGATAAAAA GCAC GAT GGGC AATAGCAAAAAGAGG ydbD 1848255 - 1845946 - | hypothetical protein TERM 2301 1846644 - 1846654 + g 72 -5.4 -4.58283 | GTTTCATCGACGTGC TCAG ATA CTGA TTTTTCGCCAGATTA TERM 2302 1847679 - 1847695 + g 83 -5.9 -4.88736 | TCATCAGCGCTTTTT TGACATT TTC AGTGTCA TTTTTGTCACTCGTA insB 1848369 - 1848872 + | IS1 ORF2 hslJ 1849210 - 1848866 - | heat-inducible protein TERM 2303 1849004 - 1849049 + g 74 -3.3 -4.88736 | overlap 1849005 AAAGCGGTTACACAT GCTGCCGGAAATCATCATT TTTTCACC AAAGCTGATTTCTGGCGGA TTTTTATCGCTGGTC TERM 2304 1849301 - 1849279 - R 86 -14.9 -2.74012 | GGATTATCTGAATCA GCTCCCCTG GATTG CAGGGGAGC TGCAAGATTAAACCA ldhA 1850298 - 1849309 - | D-lactate dehydrogenase TERM 2305 1850076 - 1850101 + g 84 -7.5 -4.66953 | opp_overlap 1850066, overlap 1850074 TGAAACCGGCACAGC GCAGGGCGATA TATT TAACGCCGTGC TTTTTCAGCTCTTCC TERM 2306 1851505 - 1851480 - g 80 -11.9 -3.39862 | ATTAAGCATGGATAA CAGTCAACTGC CTCT GCAGCTGACCG GTGAAGCGAAACAGG ydbH 1850506 - 1853145 + | hypothetical protein ynbE 1853142 - 1853327 + | hypothetical protein TERM 2307 1853840 - 1853788 - T 73 -9.5 -3.4404 | gap 2, opp_overlap 1853789 1853802, overlap 1853786 1853802 ATGCATAGTCAAATA TCTGTTTTAACTAATTGGCGTTGCA GTACA TGCAACGCCAATTAGTTAG--CGGA ATTTACGTCGATACT TERM 2308 1853789 - 1853841 + T 83 -10.8 -3.67296 | opp_overlap 1853788 1853786 1853802, overlap 1853802 TGCATAGTCAAATAT CTGTTTTAACTAATTGGCGTTGCA GTACA TGCAACGCCAATTAGTTAGCGGAA TTTACGTCGATACTC TERM 2309 1853828 - 1853802 - T 100 -15.3 -3.33815 | opp_overlap 1853789 1853802, overlap 1853788 1853786 ATCTGTTTTAACTAA TTGGCGTTGCA GTACA TGCAACGCCAA TTAGTTAGCGGAATT TERM 2310 1853802 - 1853828 + T 100 -15.3 -3.34192 | opp_overlap 1853802 1853788 1853786, overlap 1853789 ATCTGTTTTAACTAA TTGGCGTTGCA GTACA TGCAACGCCAA TTAGTTAGCGGAATT SFV_1808 1854232 - 1854053 - | putative IS1 encoded protein insB 1854307 - 1854810 + | IS1 ORF2 TERM 2311 1855290 - 1855305 + F 83 -4.6 -5.27769 | opp_overlap 1855258 CGTCGAGAGCTGTCC TGCGCG TTGC CCCGCA TTTTTACTTTTTTAT TERM 2312 1855795 - 1855831 + G 72 -5.2 -4.55887 | overlap 1855796 CTGACGCCATTTGTC CTGCATGTAGCGGC-ACG TAC CGTTGCCAC-ACATGCAC TTTCTATTTTTGGCG TERM 2313 1856479 - 1856467 - g 70 -6.9 -4.13903 | GACAGAACCAAAGAA CCCGG TGC CCAGG CAGAACCGCTCTATC TERM 2314 1857133 - 1857114 - g 70 -10 -3.16564 | gap 1 CTTCTATGTGATTAA CGC-GGCGA AAA TCGCCCGCG AATGTGGCCTGGCGG TERM 2315 1857163 - 1857176 + G 77 -3.1 -5.1287 | overlap 1857161 GCCCGTATTAATACC GTCAT GCAG ATGGC TTTTTTCCATCTGAC ydbK 1855483 - 1859007 + | putative oxidoreductase, Fe-S subunit TERM 2316 1859040 - 1859069 + F 87 -7.1 -5.10064 | opp_overlap 1859045, overlap 1859042 1859045 TATCCAATTCTAAAA AAAAAGCCCGGAC GACT GTTCGGGCTTGTC TTTTTATATGTTGGA TERM 2317 1859042 - 1859067 + F 83 -9.7 -4.16832 | opp_overlap 1859045, overlap 1859040 1859045 TCCAATTCTAAAAAA AAAGCCCGGAC GACT GTTCGGGCTTG TCTTTTTATATGTTG TERM 2318 1859064 - 1859045 - f 100 -9.2 -6.10489 | opp_overlap 1859042 1859040 1859045 AATTCTAAAAAAAAA GCCCGGAC GACT GTTCGGGC TTGTCTTTTTATATG TERM 2319 1859045 - 1859064 + F 89 -11.4 -4.16226 | opp_overlap 1859045, overlap 1859042 1859040 AATTCTAAAAAAAAA GCCCGGAC GACT GTTCGGGC TTGTCTTTTTATATG TERM 2320 1860512 - 1860530 + F 100 -10.2 -5.03945 | GTTCTAAATCCTCCT GCCCGCTG TTA TGGCGGGC TTTTTCTGCTTATTC ynaF 1860572 - 1861078 + | putative filament protein TERM 2321 1861086 - 1861105 + F 100 -10.7 -4.95957 | opp_overlap 1861086 1861085 TGCGCTGACACTAAC GCCCGCA CATTGC TGCGGGC TTTTTGATTCATTTC TERM 2322 1861105 - 1861086 - f 70 -10.7 -2.55351 | opp_overlap 1861086, overlap 1861085 TGCGCTGACACTAAC GCCCGCA CATTGC TGCGGGC TTTTTGATTCATTTC TERM 2323 1861324 - 1861314 - g 74 -2.4 -5.0809 | AACAAATTACAAAAA CGTC TGC GTCG TAACGTGGGCGAAGC TERM 2324 1861509 - 1861497 - g 84 -10.5 -3.71672 | CTCGATCAAAAGCAA CCGGG CTT CCCGG AACACGTTCTGCCCG ydaO 1861254 - 1862189 + | C32 tRNA thiolase TERM 2325 1862200 - 1862223 + T 87 -14.6 -2.80074 | opp_overlap 1862198 1862190, overlap 1862198 1862196 AATAACCAGGATAGC GCCCGATGCG CAAG CGTATCGGGC TACTCTTATGGAGGC dbpA 1863685 - 1862318 - | ATP-dependent RNA helicase DbpA TERM 2326 1862576 - 1862602 + g 70 -4.4 -4.52857 | opp_overlap 1862577, overlap 1862577 1862581 CGTCACAATGGAACT ATTAGCTGGCGG CGT TTGCCAGTTAAG TTTTATCTGCAACAT TERM 2327 1863973 - 1863954 - R 100 -10 -5.85178 | AACAGGCAAAAAAAA GCCGACTC ATCA AAGTCGGC GTCGTACGAATCAAT TERM 2328 1864110 - 1864127 + r 72 -2.7 -4.96848 | gap 1 AGAGTTTATTGACTT CGCT-CAA ACT TTGCGGCG TTTTTGTATACAGAC zntB 1865146 - 1864163 - | zinc transporter TERM 2329 1865770 - 1865799 + G 82 -2.9 -5.28176 | gap 1, opp_overlap 1865769, overlap 1865771 1865772 CGCTCGGCAAATTAT CAGCGCA-AAAAAC AAG GTTTTTATGCGCGC TTTTTTCTGACTAAC TERM 2330 1866169 - 1866130 - g 71 -3.4 -4.75372 | gap 1, overlap 1866132 ATTACTGAGCAAAAA CGGCTGGAGGAGCAGC-TG GAA CATGCTGCTCACCATGACG CGATGACCGGATTAC SFV_1817 1865401 - 1866633 + | hypothetical protein ydaL 1867217 - 1866654 - | hypothetical protein TERM 2331 1867113 - 1867088 - G 72 -10.4 -3.34227 | opp_overlap 1867105 TGAGGAAATTATCAA GCTGCAGCGT GTCGAT ACGCTGCGGC GCACGTTGGTTACGC SFV_1819 1868924 - 1867956 - | multidrug resistance-like protein TERM 2332 1868777 - 1868794 + g 74 -7.7 -4.01603 | opp_overlap 1868776 CAGCAATTAAATAGC TGGTCTG AAGC CAGGCCA TTTCGTCTTTACCTG SFV_1820 1869319 - 1868924 - | putative secretion protein TERM 2333 1869040 - 1869050 + g 77 -6.8 -4.53303 | opp_overlap 1869040 1869039 CAATTTTGGTGAAAT TGCC AGT GGCA TTTTCTATCGGAATC TERM 2334 1869882 - 1869872 - g 79 -4.6 -5.00616 | overlap 1869873 1869874 GTCCTGCGGAAAAAA GGCC ACA GACC TGTGGATAGCGACAC TERM 2335 1870417 - 1870403 - g 73 -9.2 -3.65046 | TCGTTATCTGAAGAA GCCGCC GAT AGCGGC CTCCCGGCTGGCACA TERM 2336 1870513 - 1870501 - g 73 -9.1 -3.66095 | AAACGGCGACGGAAA CGCTG ACA CAGCG TGAGCTGGTCGCGAG SFV_1821 1869630 - 1870829 + | IS1294 orf SFV_1822 1871640 - 1870993 - | putative secretion protein SFV_1823 1871880 - 1872551 + | hypothetical protein TERM 2337 1872680 - 1872708 + F 100 -10.3 -5.9003 | CTGCTGTGTGTACTG TAGAGTCTGGCGG ATG TCGACAGGCTCTA TTTTTTTATTCATTT ogt 1873095 - 1873610 + | O-6-alkylguanine-DNA:cysteine-protein methyltransferase fnr 1873805 - 1874557 + | fumarate/nitrate reduction transcriptional regulator TERM 2338 1874579 - 1874627 + F 79 -12 -3.23638 | CGCATAACTCACTAT CCTTCTGTCATATCATTAAATT TTTCT GATTTATTGATCTGGCAGAAGG TTCATCACTGTTTCA ydaA 1874709 - 1875659 + | universal stress protein UspE TERM 2339 1875679 - 1875700 + T 100 -10.1 -5.30155 | opp_overlap 1875681, overlap 1875681 TCTTCAATAACTGAC AAGGCCCGA GTTA TCGGGCCTA TTTTTTACTTACTGC TERM 2340 1875681 - 1875698 + T 95 -12.7 -4.27681 | opp_overlap 1875681, overlap 1875679 TTCAATAACTGACAA GGCCCGA GTTA TCGGGCC TATTTTTTACTTACT TERM 2341 1875698 - 1875681 - T 88 -12.7 -3.47751 | opp_overlap 1875681 1875679 TTCAATAACTGACAA GGCCCGA GTTA TCGGGCC TATTTTTTACTTACT ynaJ 1875966 - 1875799 - | hypothetical protein SFV_1828 1876732 - 1876166 - | IS911 ORF2 TERM 2342 1876574 - 1876585 + g 77 -5.8 -4.63218 | opp_overlap 1876570 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SFV_1829 1877335 - 1877033 - | IS911 ORF1 TERM 2343 1878366 - 1878387 + G 70 -5.1 -4.43877 | overlap 1878367 ACGGTATGGGCTGAG TGGCTTGCT GCAC AGCAAGACG TTTATTTGAAGATTA SFV_1830 1877463 - 1878494 + | hypothetical protein TERM 2344 1878533 - 1878506 - T 83 -14.2 -2.74525 | overlap 1878503 1878522 CTAAATCAGACATCA CTGGCGTTATCC ACAA GGGTAACGCCAG TTCCCATCACATCAA SFV_1831 1880179 - 1878545 - | putative transport periplasmic protein TERM 2345 1879153 - 1879163 + g 70 -6.8 -4.09685 | opp_overlap 1879152 1879153 CATCTGGTATAAAAT GCCA CGC TGGC TTTTCGCCCGTCCCC TERM 2346 1879919 - 1879933 + g 86 -7.1 -4.95876 | TTGAGTCGCGACGCC GGGGA CAATC TCCCC TTTTTCGTTCTGATT SFV_1833 1881026 - 1881328 + | IS600 ORF1 SFV_1834 1881469 - 1882182 + | IS600 ORF2 TERM 2347 1883256 - 1883241 - g 70 -4 -4.60487 | gap 1, opp_overlap 1883241 GACGACCTGGAAAAA GGT-CTG CCT CAGCACC TGTTTGAATCGCTCT SFV_1836 1883130 - 1883402 + | putative host-nuclease inhibitor protein Gam SFV_1837 1883486 - 1884529 + | putative bacteriophage protein SFV_1838 1884869 - 1885171 + | IS600 ORF1 SFV_1839 1885312 - 1886025 + | IS600 ORF2 TERM 2348 1887239 - 1887225 - g 82 -2.7 -5.31275 | CGGGATTAGAAAAAA CAGCC CTGAC GGCAG CATTCACCCGGACGG TERM 2349 1887304 - 1887286 - g 72 -6 -4.42386 | opp_overlap 1887290, overlap 1887290 GTCGCAGCCAGAAAA TTAACAGG TAT CCTGTTCA GTGAAAACCCACCAA SFV_1840 1886389 - 1887465 + | putative phage integrase protein TERM 2350 1887630 - 1887604 - T 100 -11 -5.69379 | ATACAATTAAAAAAA GACCGAATAC GATTCCT GTATTCGGTC CAGGGAAATGGCTCT TERM 2351 1887821 - 1887792 - T 72 -5.1 -4.70879 | gap 2, opp_overlap 1887792 CTTAAATGTTAAAAA CCGCC-C-GTTCT GGTGAA AGAACTGAGGCGG TTTTTTTATTGGAAA TERM 2352 1887792 - 1887821 + T 89 -5.1 -5.7946 | gap 2, opp_overlap 1887792 CTTAAATGTTAAAAA CCGCC-C-GTTCT GGTGAA AGAACTGAGGCGG TTTTTTTATTGGAAA SFV_1841 1888199 - 1887858 - | hypothetical protein SFV_1842 1889084 - 1888212 - | putative resistance protein TERM 2353 1889065 - 1889055 - G 70 -6.8 -4.02132 | GGTGAAATGGATAAA TCGC AGC GCGA TCCAGGTAAACGCCA SFV_1843 1889462 - 1889088 - | hypothetical protein holE 1889601 - 1889831 + | DNA polymerase III subunit theta SFV_1845 1890164 - 1890589 + | hypothetical protein TERM 2354 1890652 - 1890638 - g 70 -7.1 -4.1399 | overlap 1890634 TTATCGATACAGAAA CCTGC GGTTT GCAGG GAGGGATCGTTGAGA SFV_1846 1890613 - 1891275 + | exodeoxyribonuclease X ptrB 1893332 - 1891272 - | protease 2 TERM 2355 1892566 - 1892550 - G 71 -2.2 -4.96501 | gap 1, opp_overlap 1892551, overlap 1892551 CGGCAGAAAAACAAA CGGCTCG GCAT CG-GCCA TTTCCGCGTCCAGCA TERM 2356 1892968 - 1892958 - G 75 -5.4 -4.67982 | opp_overlap 1892966 GCCCATCGAATAAAA CTCA CTA TGAG CTGCGCGCTTGTTGG yebE 1894200 - 1893541 - | hypothetical protein TERM 2357 1893947 - 1893959 + g 74 -3.3 -4.88684 | overlap 1893947 TGCGGTTCGTCCTGA TGCGC CGC GCGAA TTTTATCTTTGTATT yebF 1894895 - 1894527 - | hypothetical protein TERM 2358 1894710 - 1894722 + g 75 -4.7 -4.73613 | overlap 1894711 TTGATCATCTGCCCA GCGCG CCA CGCGA TTTTGTTGATAATCA TERM 2359 1895029 - 1895045 + H 73 -2.1 -5.18726 | opp_overlap 1895030 1895031, overlap 1895031 TTGCCGGTTTTCAGA ATGGTGC TCA GCACCTC TTTTTGTTCTGCCAG TERM 2360 1895031 - 1895043 + H 83 -9.1 -4.22377 | opp_overlap 1895031 1895030, overlap 1895029 GCCGGTTTTCAGAAT GGTGC TCA GCACC TCTTTTTGTTCTGCC purT 1895374 - 1896552 + | phosphoribosylglycinamide formyltransferase 2 TERM 2361 1896606 - 1896567 - T 79 -3.1 -5.41746 | gap 3, opp_overlap 1896578, overlap 1896578 AACCCGGCAAAAAAA CGCTACAAAAATGCCCGATC CTA GATCGGGCATTTT-G-A-CT TTTACAGCTTAGCGC TERM 2362 1896578 - 1896598 + T 100 -15.5 -4.4267 | opp_overlap 1896567 1896578 AAAACGCTACAAAAA TGCCCGATC CTA GATCGGGCA TTTTGACTTTTACAG TERM 2363 1896598 - 1896578 - T 100 -15.5 -4.90296 | opp_overlap 1896578, overlap 1896567 AAAACGCTACAAAAA TGCCCGATC CTA GATCGGGCA TTTTGACTTTTACAG eda 1897249 - 1896608 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 2364 1897204 - 1897192 - G 71 -9.1 -3.44051 | opp_overlap 1897200 1897201, overlap 1897201 TTTTTACCACGATAA CCGGT ACA ACCGG GCCGGTGGTCAGGAT TERM 2365 1897310 - 1897327 + r 82 -7.7 -4.56597 | GATACAGGTTGCGCC CTGTTCG GCAC CGGACAG TTTTTCACGCAAGGC edd 1899097 - 1897286 - | phosphogluconate dehydratase TERM 2366 1899252 - 1899227 - R 100 -11.2 -5.80364 | gap 1 AGTGTAATAAAAAAA GCCTCGTG-GG TGAAT CCGCACGAGGC CTGAAAGTGTAAAAA zwf 1900807 - 1899332 - | glucose-6-phosphate 1-dehydrogenase TERM 2367 1900767 - 1900733 - G 89 -13.6 -3.22388 | overlap 1900737 CAGGGAAGGCAGCAA TTTACGACGCGCAAGG TCG CCTTTCGCGCCGAAAA TGACCAGGTCACAGG TERM 2368 1900763 - 1900737 - G 90 -14.4 -2.57721 | overlap 1900733 GAAGGCAGCAATTTA CGACGCGCAAGG TCG CCTTTCGCGCCG AAAATGACCAGGTCA TERM 2369 1901178 - 1901163 - g 81 -4.7 -5.02476 | overlap 1901152 ATATGCTGGAAAAAA TCCAG TCTCAG CTGGA ACATTTGAGCAAATC yebK 1901144 - 1902013 + | DNA-binding transcriptional regulator HexR TERM 2370 1902000 - 1902026 + F 77 -11.6 -2.87146 | opp_overlap 1901986 1902000 1902016 AGTTACTTAATTTAA GTGACGATCGCT AAA AGCGACTGTCAC TGTCCTAATCTTATA TERM 2371 1902026 - 1902000 - f 79 -11.6 -3.19371 | opp_overlap 1902000, overlap 1901986 1902016 AGTTACTTAATTTAA GTGACGATCGCT AAA AGCGACTGTCAC TGTCCTAATCTTATA TERM 2372 1902479 - 1902468 - g 95 -5.8 -5.38054 | GGCGACAAAGAAAAA GTCG GTAT CGAC TACAAAGGCCTGCCT pykA 1902141 - 1903583 + | pyruvate kinase TERM 2373 1903590 - 1903621 + T 93 -15.8 -2.92668 | opp_overlap 1903587 1903585 1903584, overlap 1903587 GTAGAGTAAGTACGT TGCCGGATGCGGCG AAAA CGCCACATCCGGCC TATAGTTCAATGATA TERM 2374 1903691 - 1903709 + T 100 -10.3 -5.68438 | TATCATCAGGCGAAG GCCTCTC CTCGC GAGAGGC TTTTTTATTTGATGG msbB 1904739 - 1903714 - | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2375 1904196 - 1904184 - G 79 -4.7 -4.9755 | opp_overlap 1904184 AGACATAATCAAAAA CCGGG TTG CCCTG ATTATGGAACATCGC TERM 2376 1904788 - 1904766 - R 100 -10.6 -5.99154 | CACCAAATAAAAAAA GCCGGTAC TGACTGC GTACCGGC TGCGAATGGATGTTA yebA 1906127 - 1904805 - | hypothetical protein TERM 2377 1905506 - 1905522 + g 81 -10.1 -3.87815 | opp_overlap 1905517, overlap 1905493 CTGCGCTCACTTCGG CGCTGGT TAA ACCGGCG TTTCTGGCGCTGGCA znuA 1907201 - 1906143 - | high-affinity zinc transporter periplasmic component TERM 2378 1906419 - 1906430 + gH 72 -4.4 -4.59773 | ATGACCAAGCGGTGT CAGT CCGA ACTG TTTTTCGAAATAGCC TERM 2379 1906671 - 1906684 + gH 77 -3.1 -5.03715 | overlap 1906660 1906669 GAAATCGCCGTGATG GTGAT CTTC GTCAC TTTTTTCCGCGTGGT TERM 2380 1906784 - 1906802 + gH 75 -5.3 -4.65895 | TTACCTGCTTCGCTT CTGGTAA TTTGC TTACCGG TTTTTGCATAAACGC znuC 1907154 - 1907909 + | high-affinity zinc transporter ATPase znuB 1907906 - 1908691 + | high-affinity zinc transporter membrane component ruvB 1909848 - 1908838 - | Holliday junction DNA helicase B ruvA 1910468 - 1909857 - | Holliday junction DNA helicase motor protein TERM 2381 1910537 - 1910518 - H 100 -10.8 -5.67063 | TGTATGATAAAAAAA TGCTGGAT AGAT ATCCAGCA AAGGATGAAGAAAAC TERM 2382 1911024 - 1911012 - g 85 -3.4 -5.35721 | ACAGAACAACAAAAA CAAC GAATT GTTG AACAGGTTCCCTCCC TERM 2383 1911338 - 1911313 - g 77 -10.4 -3.61178 | opp_overlap 1911329 CGGAGGGAGTTGAAA CGCCTCAGCC GGAACT GACCGAGGCG GTATAACTTAACGCA yebB 1910742 - 1911344 + | hypothetical protein ruvC 1911867 - 1911346 - | Holliday junction resolvase TERM 2384 1911480 - 1911509 + g 86 -7.1 -5.02074 | opp_overlap 1911484 TAGCGGGCAGTTTCA GCAAGGTGCGG ACCATATG CTGCACCTGGC TTTTTTCGGCACTAC yebC 1912642 - 1911902 - | hypothetical protein ntpA 1913153 - 1912671 - | dATP pyrophosphohydrolase aspS 1915013 - 1913241 - | aspartyl-tRNA synthetase TERM 2385 1915932 - 1915907 - g 71 -3.3 -4.74518 | gap 1, opp_overlap 1915915, overlap 1915908 1915922 AACGACGAAAACAAA CTCAGGTC-GCT AAT ATCTGACCTGAA ACAACATGGTCAGAT TERM 2386 1916912 - 1916940 + G 71 -3.2 -4.82901 | AGACGACGCTGCGAC GTTCTGTTCGC-CA TGA TGCGCGA-CGGGAC TTTTTATACCCCGCA SFV_1870 1915769 - 1916965 + | ISSfl2 ORF TERM 2387 1917680 - 1917661 - f 77 -7.2 -4.46215 | overlap 1917658 TACAGTTAAAAATAA CACTGTAT AAAA ACACAGTG TAGAGGGATTTTTAT SFV_1871 1917694 - 1917942 + | hypothetical protein TERM 2388 1918147 - 1918132 - f 72 -6.1 -4.26076 | GCAGTCTCAGCAAAA CACCG ACCAGA CGGTG AGAAGACAAAAAGAT ipaH_3 1918541 - 1920292 + | invasion plasmid antigen TERM 2389 1920357 - 1920334 - T 93 -10.2 -4.58395 | opp_overlap 1920346 1920347, overlap 1920336 CTGACTCCGGAAAAA CAGAGGCCCG CCCC CGGGCCTCCC CGGATTCATCCGTTT TERM 2390 1920355 - 1920336 - T 100 -15 -3.90762 | opp_overlap 1920346 1920347, overlap 1920334 GACTCCGGAAAAACA GAGGCCCG CCCC CGGGCCTC CCCGGATTCATCCGT SFV_1873 1922460 - 1920472 - | putative phage tail fiber protein TERM 2391 1922496 - 1922477 - R 100 -10 -4.85599 | gap 1, opp_overlap 1922477 TTCACCCCACAAAAA GCCCGCCTG AAC CAG-CGGGC TGTCATAACACTGTG SFV_1874 1923123 - 1922524 - | putative membrane protein precursor TERM 2392 1922857 - 1922885 + g 84 -3.7 -5.2112 | overlap 1922859 1922866 GTTACGCACGGAATC CTCATGCCAGCGG GTA TCGCTGTAATGCG TTTTTTGCTCATCTT TERM 2393 1923171 - 1923154 - R 100 -11.3 -5.4505 | opp_overlap 1923152 1923170 TTCTGCAATAAAAAA GGCACCA TTTC TGGTGCC CGTATCTGGGTTATA SFV_1875 1926670 - 1923191 - | host specificity protein TERM 2394 1924007 - 1924036 + g 70 -6.5 -4.18367 | CACAGCCCACATGCT GTTCAGGTTATTA TTTG TATCAACCTGAAC TTTCTGTATCTGCTG TERM 2395 1924909 - 1924934 + g 72 -9.7 -3.30441 | GCACATGCTGCACGG CGGTGATGGCA TACG TGCCGTCGTCG TTCTCACGGATACTC TERM 2396 1926520 - 1926540 + g 71 -3.1 -4.7497 | CGCTGTCCAGGACCG GCGTACCGT TCA GCAGCACGC TTTTTAATCCATCCA TERM 2397 1926714 - 1926691 - R 70 -9.6 -3.01125 | opp_overlap 1926696 1926709, overlap 1926696 ACGCTCCATAAACGA CAAAACCGCC CGCA GGCGGTTTCA CATGAAACATTTTGC TERM 2398 1926696 - 1926709 + r 75 -9.5 -3.60098 | opp_overlap 1926691 1926696 CCATAAACGACAAAA CCGCC CGCA GGCGG TTTCACATGAAACAT TERM 2399 1926709 - 1926696 - R 93 -9.5 -4.64846 | opp_overlap 1926696, overlap 1926691 CCATAAACGACAAAA CCGCC CGCA GGCGG TTTCACATGAAACAT SFV_1876 1927306 - 1926731 - | putative tail component of prophage SFV_1877 1928082 - 1927270 - | tail assembly protein TERM 2400 1927508 - 1927478 - GR 74 -6 -4.45945 | overlap 1927483 1927485 ACCGATGAACCAAAA CAGCACAGCAGCAC ATC GCCCGGTTGTGCTG ATGACAACGGCACCT TERM 2401 1927882 - 1927897 + gr 70 -10.4 -2.5474 | overlap 1927881 1927879 CATCCGGAACCGTTC CTCCGG CTCA CCGGAG ATATTCTCGCTGGGA TERM 2402 1927987 - 1928003 + gr 70 -9.5 -3.03214 | opp_overlap 1927957, overlap 1927989 TCGCCGGGCGTGCGC CAGAATC GCT GATTCTG TCTGTGTCATGGATT SFV_1878 1928959 - 1928018 - | minor tail protein TERM 2403 1928405 - 1928385 - GR 90 -9.7 -4.42653 | overlap 1928387 ACCGCATCCAGAAAA CGGGCGTAA ACC TTACGCCGG ACCACCGTTCCGCCG TERM 2404 1928403 - 1928387 - GR 73 -10.9 -2.54745 | overlap 1928385 CGCATCCAGAAAACG GGCGTAA ACC TTACGCC GGACCACCGTTCCGC TERM 2405 1928567 - 1928581 + gr 80 -5.7 -4.94972 | CTGCCGCCCCTGCCA GGTGA CCGGC TCACC TTTTTCGTTCTGCTC TERM 2406 1928764 - 1928733 - GR 100 -15.2 -3.35798 | overlap 1928751 AGTTTCCAGTCATAA GGTGGCGTCCAC TGAAATGC GCGGACGCCACC GTGCCGTTCCAGAAA TERM 2407 1929583 - 1929609 + r 76 -5 -4.78077 | TTTCCAGTCGCCCTG CGCCACTTCCAG TTC CTGCCAGTAGCG TTTGTTTTCATTCAG TERM 2408 1930163 - 1930180 + r 75 -2.7 -5.14163 | gap 1, overlap 1930164 1930166 CGGGTGGCCTCATCA T-TACGGG TTG CCCGTGTA TTTTTCTTAATGGCT TERM 2409 1930164 - 1930178 + r 76 -7.8 -4.19587 | overlap 1930163 1930166 GGGTGGCCTCATCAT TACGGG TTG CCCGTG TATTTTTCTTAATGG TERM 2410 1930166 - 1930176 + r 72 -8.2 -3.67974 | overlap 1930164 1930163 GTGGCCTCATCATTA CGGG TTG CCCG TGTATTTTTCTTAAT TERM 2411 1931026 - 1931045 + r 90 -13.6 -3.32997 | opp_overlap 1931022, overlap 1931022 CACCGGCATAATGTC CCGTCAGC GCCA GCTGACGG TTAAATTTCTCGCCC TERM 2412 1931663 - 1931633 - R 75 -6.1 -4.37658 | gap 1, opp_overlap 1931634, overlap 1931634 AATCTGGCGATAAAA GGCGGCAGCCGC TTTATCCT GCGCCT-CCGCC AGTGCCCTGGCCTGC TERM 2413 1931634 - 1931644 + r 74 -8.2 -3.96624 | opp_overlap 1931633 1931634 ATCTGGCGATAAAAG GCGG CAG CCGC TTTATCCTGCGCCTC SFV_1880 1932302 - 1931973 - | putative tail component of prophage TERM 2414 1932099 - 1932086 - G 74 -8.1 -4.07568 | overlap 1932097 TCTCTTCCGGTAAAA GGCTG AAAT CAGCC ACCGCAGCATCGCTG SFV_1881 1932697 - 1932311 - | putative tail component of prophage TERM 2415 1932736 - 1932719 - R 100 -14.1 -4.65895 | CTCCGGATGCAAAAA GCCCCGG ATAA CCGGGGC AATGATGAGTATCGT SFV_1882 1933496 - 1932756 - | putative tail component of prophage SFV_1883 1933908 - 1933507 - | putative tail component of prophage SFV_1884 1934441 - 1933905 - | putative tail component of prophage TERM 2416 1934373 - 1934409 + g 72 -8 -3.86897 | gap 1 ATTCCCGGCAACCTG CCGGGTGGCAACCGAGA CCGC TTTCTGT-GCCACACGG TTTATCGCCCATGCG SFV_1885 1934850 - 1934479 - | putative tail attachment protein SFV_1886 1935263 - 1934862 - | putative DNA-packaging protein TERM 2417 1935690 - 1935665 - g 71 -3.3 -4.74518 | gap 1, opp_overlap 1935673, overlap 1935666 1935680 AACGACGAAAACAAA CTCAGGTC-GCT AAT ATCTGACCTGAA ACAACATGGTCAGAT TERM 2418 1936670 - 1936698 + G 71 -3.2 -4.82901 | AGACGACGCTGCGAC GTTCTGTTCGC-CA TGA TGCGCGA-CGGGAC TTTTTATACCCCGCA SFV_1887 1935527 - 1936723 + | ISSfl2 ORF TERM 2419 1936807 - 1936783 - T 100 -7.9 -5.64421 | ATCGGAAAGAAAAAA GGCCATCAG CAAAACT CTGATGACC TGAATCACCTTTACC TERM 2420 1936987 - 1937010 + T 72 -6.6 -4.2711 | overlap 1936988 GGTCCTTTTTTCTAC GGTCCTCCTC CCCG GAGGGGGGCA TTTCATTATTTTTCT TERM 2421 1936988 - 1937009 + T 71 -10.1 -3.13826 | overlap 1936987 GTCCTTTTTTCTACG GTCCTCCTC CCCG GAGGGGGGC ATTTCATTATTTTTC TERM 2422 1937161 - 1937146 - T 77 -3.9 -5.24129 | GCGCTGTACAAAAAA CCGCC AGCCAA GGCAG TTAAGAGTGTGTTCC TERM 2423 1937837 - 1937827 - T 100 -8.2 -5.64274 | opp_overlap 1937827 1937830 TCAGGCATAAAAAAA CCGC TCG GCGG CGGGTTTTGCTTACT SFV_1892 1938492 - 1937908 - | putative Q antiterminator encoded by prophage TERM 2424 1938433 - 1938458 + g 100 -8.3 -5.42862 | gap 1 CCGCGTTATCATTTT TCCGGTCACCTC ATC GCGGT-ACCGGA TTTTTTTACGCCTGT SFV_1893 1938953 - 1938594 - | putative endonuclease encoded by cryptic prophage SFV_1894 1939141 - 1938953 - | putative bacteriophage protein SFV_1895 1939157 - 1939459 + | IS600 ORF1 SFV_1896 1939600 - 1940313 + | IS600 ORF2 SFV_1897 1941046 - 1940354 - | IS629 ORF2 TERM 2425 1940726 - 1940738 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SFV_1898 1941372 - 1941046 - | IS629 ORF1 SFV_1899 1942197 - 1941424 - | hypothetical protein TERM 2426 1941515 - 1941530 + g 78 -5.4 -4.78149 | GCTTGCTCATTAGCG GCATCT GAGA AGGTGC TTTTTCCGTTCTCAA SFV_1900 1943988 - 1942294 - | hypothetical protein TERM 2427 1943516 - 1943505 - G 72 -4.4 -4.61231 | TCATATTTCTAAAAA GTTC TTCA GAAC CTTGAATACCCATAG TERM 2428 1944517 - 1944483 - R 95 -8 -5.4251 | gap 1, opp_overlap 1944483 CTCATATACAAAAAA GGGAGAG-CTACCGA TGTCAC TCGATAATCTCTCCC GTTGATTTTTACCCA SFV_1901 1945515 - 1945144 - | hypothetical protein TERM 2429 1945737 - 1945699 - R 100 -9.9 -4.73388 | opp_overlap 1945693, overlap 1945711 AAGTTTTAGGAAAAA CTTTCTTTAAAAGCTCT GTTTA AAAACTCTTAAAGAAAG CCCTAACTCATGATT TERM 2430 1945757 - 1945737 - R 79 -7.6 -4.4448 | overlap 1945711 AAACTCTTAAAGAAA GCCCTAAC TCATG ATTAGGGC AAAGCTGTAAAGGAT SFV_1902 1947869 - 1947315 - | hypothetical protein TERM 2431 1948590 - 1948580 - R 74 -6.8 -4.23213 | opp_overlap 1948580 GCGACACCCAAGAAA GGGA AGC TCCC TTCTTAACCGACCTT SFV_1903 1951045 - 1950212 - | hypothetical protein TERM 2432 1950887 - 1950870 - G 71 -2.1 -5.00642 | gap 1, opp_overlap 1950870, overlap 1950873 1950883 TAATGTACATAAAAA TATTCCTG AGA CAG-AATA TAATCTATTCGAAAC TERM 2433 1951352 - 1951328 - g 72 -10 -3.31915 | opp_overlap 1951327 1951328, overlap 1951326 1951325 TGGTTACAAAAATTA GCGCAGTGGC ATCAG ACCACTACGC CTTATCTTTTTTTAC SFV_1904 1951136 - 1951486 + | hypothetical protein yecN 1951539 - 1951934 + | hypothetical protein yecO 1951975 - 1952718 + | hypothetical protein yecP 1952715 - 1953686 + | putative enzyme TERM 2434 1953821 - 1953842 + F 77 -11.5 -3.28745 | opp_overlap 1953819 1953818, overlap 1953823 ACGTTTGCATAACCT CAGCGCCCG TTTC CGGGCGCTA TTCACTTCTTACGCC TERM 2435 1953823 - 1953840 + F 86 -14.1 -3.20751 | opp_overlap 1953819 1953818, overlap 1953821 GTTTGCATAACCTCA GCGCCCG TTTC CGGGCGC TATTCACTTCTTACG SFV_1908 1955058 - 1955423 + | insertion sequence 2 OrfA protein SFV_1909 1955447 - 1956286 + | IS2 ORF2 TERM 2436 1956880 - 1956893 + T 70 -2.3 -5.06451 | opp_overlap 1956872 1956881, overlap 1956872 1956881 GGATCAATGGCAATC ACTGG TTTG CCAGA TTTTTTCAGCTGATG TERM 2437 1957568 - 1957584 + T 72 -9.4 -3.48105 | overlap 1957567 TCACCACCAGCGCTC CAGCGG CAATA CCGCTG TGTTTAATAAATTCA yecK 1958741 - 1957641 - | putative cytochrome C-type protein TERM 2438 1959081 - 1959057 - R 100 -10 -5.64274 | TCAGGGATAAAAAAA GGCCCCTG TTGAAATTG CAGGGGCC TGGTACGAGCAAGCA cutC 1959875 - 1959129 - | copper homeostasis protein CutC yecM 1960455 - 1959889 - | hypothetical protein TERM 2439 1960286 - 1960306 + g 72 -6.7 -4.25104 | opp_overlap 1960260 1960280 TGTTCAAAACCGCGA CGCCAGCGC TCA GCGGTGACG TTTTGATGGCAACGC TERM 2440 1960630 - 1960648 + H 77 -11 -3.20382 | ATTTCTTTAACTGGT GCGGGCAA TTT TTGCTCGC TTCATCAATGTAAGG TERM 2441 1961991 - 1961981 - g 70 -4.6 -4.57569 | overlap 1961963 GGATCTCTCCAAAAA CCGC ACC ACGG ACTACATCTTCGACT argS 1960671 - 1962404 + | arginyl-tRNA synthetase TERM 2442 1962451 - 1962426 - f 77 -11.2 -3.12351 | opp_overlap 1962426 TTTCGTGAGAGTGAA GCCTGATCAG GGTTAG CCGATCAGGC TTTTTTATTGCCATC TERM 2443 1962426 - 1962451 + F 100 -9.8 -5.46657 | gap 1, opp_overlap 1962426 TTTCGTGAGAGTGAA GCCTGATCAGG GTTAG CC-GATCAGGC TTTTTTATTGCCATC yecT 1962581 - 1963069 + | hypothetical protein SFV_1916 1963723 - 1963289 - | IS629 ORF2 SFV_1917 1964158 - 1963805 - | IS629 ORF2 TERM 2444 1963842 - 1963854 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SFV_1918 1964484 - 1964158 - | IS629 ORF1 flhE 1964874 - 1964536 - | flagellar protein flhB 1968091 - 1966898 - | flagellar biosynthesis protein FlhB TERM 2445 1966995 - 1966975 - G 72 -4.6 -4.63218 | TTCTCGTTAATAAAA TCCAGGGC TGCCG GCACCGGA AGATGAGTAGGTGTA TERM 2446 1967422 - 1967438 + g 84 -7.9 -4.62783 | CATCACGAATATCCT GCCGCGA CAT TCGCAGC TTTTTCAGGTGGCTG TERM 2447 1968008 - 1968034 + g 71 -2.2 -4.9218 | overlap 1968009 GGTCAGTTCACGGGA ACGCGGGA TTTGCCCCTCT TCCCGCGC TTTTTCTAGTCGGTG SFV_1922 1969286 - 1968720 - | IS911 ORF2 TERM 2448 1969128 - 1969139 + g 77 -5.8 -4.63218 | opp_overlap 1969124 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SFV_1923 1969925 - 1969587 - | IS911 ORF1 TERM 2449 1970108 - 1970133 + G 76 -12.7 -2.51547 | opp_overlap 1970108, overlap 1970107 1970105 1970131 GATGAGCATAAGAAA GCCAGAGTATT ACTT GATACTCTGGC CTGTTCCTGTCCGGC TERM 2450 1970133 - 1970108 - g 95 -12 -4.36554 | opp_overlap 1970108 1970107 1970105 1970131 GATGAGCATAAGAAA GCCAGAGTAT TACTTG ATACTCTGGC CTGTTCCTGTCCGGC SFV_1924 1970030 - 1970425 + | hypothetical protein SFV_1925 1970654 - 1970779 + | IS600 ORF1 SFV_1926 1970920 - 1971633 + | IS600 ORF2 cheZ 1972781 - 1972137 - | chemotaxis regulator CheZ TERM 2451 1972712 - 1972690 - G 74 -9.8 -3.53811 | overlap 1972705 CCCAGTTCCCGCAAA CTGTCGCGCA GCA TACGCGTCAG GCTGCCGATGCGCGC cheY 1973181 - 1972792 - | chemotaxis regulatory protein CheY cheB 1974245 - 1973196 - | chemotaxis-specific methylesterase cheR 1975108 - 1974248 - | chemotaxis methyltransferase CheR tap 1976728 - 1975127 - | methyl-accepting protein IV TERM 2452 1975730 - 1975745 + g 74 -2.4 -5.055 | overlap 1975724 1975727 1975731 AACACCGCCCGCCTG CGCCGT TGTC GCGGCA TTTTTTGCCAGTTCC TERM 2453 1976339 - 1976358 + g 74 -6.4 -4.46757 | overlap 1976349 CTGATGTTCGAGATC GTTGTGCC AGCG GGCAAAAC TTTTCTCCGTCTCTT tar 1978435 - 1976774 - | methyl-accepting chemotaxis protein II, aspartate sensor receptor TERM 2454 1977680 - 1977657 - G 73 -9.6 -3.64822 | ACGGTGTCAGTCAAA GAGCGTTGCA TATG TGAAACGCTC TGCGCCAGGTCACCC TERM 2455 1978551 - 1978531 - R 100 -8.3 -5.67283 | opp_overlap 1978531 1978527 AATTGAAATAAAAAA CCCGATG CGCAGAT CATCGGG TTCATTTCAATTGAG cheW 1979083 - 1978580 - | purine-binding chemotaxis protein TERM 2456 1978626 - 1978636 + g 71 -3.2 -4.74706 | opp_overlap 1978610 AGCGCCATCTCTTCG CTGT TCA GCAG TTTTTCGATGTTCAC cheA 1981068 - 1979104 - | chemotaxis protein CheA TERM 2457 1979293 - 1979309 + g 72 -7.9 -3.89346 | opp_overlap 1979290 1979291 ATCCACCAGCAAGGC GTAGCGG CGA CCGCCAC TTTGTAAGATCACCA TERM 2458 1980659 - 1980681 + g 76 -11.2 -3.41527 | overlap 1980665 CTTAATCGGGTCACT GCGGATGGCG TTT CGCCTTTCGC TTCTAATGCCAGTTG TERM 2459 1980665 - 1980675 + g 72 -8.2 -3.82083 | overlap 1980659 CGGGTCACTGCGGAT GGCG TTT CGCC TTTCGCTTCTAATGC motB 1981999 - 1981073 - | flagellar motor protein MotB TERM 2460 1981111 - 1981129 + g 85 -8.8 -4.56775 | TTGTGGGAACACTGA CCTGTGGT GCA ACCTCAGG TTTTTCCAGGGCGCT motA 1982883 - 1981996 - | flagellar motor protein MotA TERM 2461 1982699 - 1982718 + g 72 -8.6 -3.82097 | gap 1, opp_overlap 1982699 1982698 CGACGAAACAGCAAC GGCAGCGCT TTC AGCG-TGCC TTTAATCGCTTTGCC TERM 2462 1982983 - 1982960 - R 100 -12.5 -5.75342 | TTGGGGCAAAAAAAA GCAGCGGTA CGTCGT TACCGCTGC TGGAATGTTGCGCCA flhC 1983588 - 1983010 - | transcriptional activator FlhC TERM 2463 1984220 - 1984201 - H 72 -9.4 -3.63515 | TGCGATTTTCAATAA TGTGTGAT GCAG ATCACACA AAACACTCAATTACT TERM 2464 1985066 - 1985099 + G 85 -14.1 -2.75382 | gap 1, opp_overlap 1985064, overlap 1985063 AATCACAATCACAGT TTCTTTTCGC-GAGCA TCC TGCTCGGCGAAAAGAG TGATTGCCTCAAGTG yecG 1984724 - 1985152 + | universal stress protein UspC otsB 1987348 - 1986548 - | trehalose-6-phosphate phosphatase TERM 2465 1986782 - 1986769 - G 71 -9.5 -3.5241 | overlap 1986756 1986767 CATCGCCCAGAAATA CGGGC GTTC GCCCG ATAAAAGGAGCTTCC TERM 2466 1987476 - 1987451 - R 93 -12.6 -3.81414 | opp_overlap 1987453 ATTTGCAACGAAGAA CAGCCAACCG TTGTGG CGGCTGGCTG TGGTGGGAAAAAACG araH 1988501 - 1987515 - | L-arabinose transporter permease protein araG 1990025 - 1989144 - | L-arabinose transport ATP-binding protein araG TERM 2467 1990055 - 1990081 + r 93 -10.8 -4.57341 | overlap 1990056 1990057 TCACTGGTCGTTCAC ACCCCCTCTGCA TCA TGCAGAGGGGAA TTTTTCCGGCAAATT TERM 2468 1990056 - 1990080 + r 93 -14.3 -3.33922 | overlap 1990055 1990057 CACTGGTCGTTCACA CCCCCTCTGCA TCA TGCAGAGGGGA ATTTTTCCGGCAAAT TERM 2469 1990057 - 1990079 + r 100 -17.8 -2.60032 | overlap 1990056 1990055 ACTGGTCGTTCACAC CCCCTCTGCA TCA TGCAGAGGGG AATTTTTCCGGCAAA araF 1991084 - 1990095 - | L-arabinose-binding periplasmic protein TERM 2470 1991138 - 1991126 - H 78 -6.3 -4.62069 | opp_overlap 1991126 TGTGTAGGGCAAAAA CGAAT GAC ATTCG TTAAATTAATCGGAA TERM 2471 1992282 - 1992259 - g 70 -5.2 -4.41633 | GATCTGGAAAAAGAA CAGCAGCATG ATGG CCTGTTGCTG CAAACCATTCTTGAT yecI 1991881 - 1992384 + | ferritin-like protein TERM 2472 1992387 - 1992419 + T 78 -6.2 -4.56597 | opp_overlap 1992390 1992392, overlap 1992388 CCAGCTGCATTGATC ATACATCGGCGCTA ATACA TTGCGCCGATGAAG TTTTTGAGAAACCGC TERM 2473 1992388 - 1992418 + T 73 -9.7 -3.33744 | opp_overlap 1992390 1992392, overlap 1992387 CAGCTGCATTGATCA TACATCGGCGCTA ATACA TTGCGCCGATGAA GTTTTTGAGAAACCG TERM 2474 1992416 - 1992390 - T 79 -12.3 -2.80816 | opp_overlap 1992388 1992387, overlap 1992392 GCTGCATTGATCATA CATCGGCGCTA ATACA TTGCGCCGATG AAGTTTTTGAGAAAC TERM 2475 1992458 - 1992431 - T 95 -13.5 -3.86822 | opp_overlap 1992431 GAAGTTTTTGAGAAA CCGCTGCCTCA TCTGTT TGAAGCAGCGG TTTTTTTAATGGGAT TERM 2476 1992431 - 1992458 + T 100 -11.3 -5.52986 | opp_overlap 1992431 GAAGTTTTTGAGAAA CCGCTGCCTCA TCTGTT TGAAGCAGCGG TTTTTTTAATGGGAT SFV_1947 1992715 - 1992464 - | hypothetical protein TERM 2477 1992802 - 1992829 + H 73 -10 -3.30007 | opp_overlap 1992801 1992809, overlap 1992809 CCGTCATCAGGACAC AAAAAAACCTGC CGGA GCAGGTTTTTTG TTATCGGAACATATT TERM 2478 1992809 - 1992822 + H 100 -8.1 -5.55769 | opp_overlap 1992801 1992809, overlap 1992802 CAGGACACAAAAAAA CCTGC CGGA GCAGG TTTTTTGTTATCGGA TERM 2479 1992822 - 1992809 - H 100 -8.1 -5.74122 | opp_overlap 1992809 1992802, overlap 1992801 CAGGACACAAAAAAA CCTGC CGGA GCAGG TTTTTTGTTATCGGA TERM 2480 1993096 - 1993108 + H 72 -9.1 -3.64488 | opp_overlap 1993096 1993095 1993093 1993083, overlap 1993095 GATGGCAAGAAATAG CGCCT GCC AGGCG TCTTTTCCGGCCATT SFV_1948 1993179 - 1993502 + | hypothetical protein TERM 2481 1993539 - 1993506 - f 73 -9.7 -3.34398 | opp_overlap 1993515, overlap 1993504 1993507 GTCTTTCTCTAAATA TTTTAATCAGCGAGG GGAT CTTCGCTGATTAAAG AAATAGCGGTAATGC TERM 2482 1993538 - 1993507 - f 81 -13.2 -2.60496 | opp_overlap 1993515, overlap 1993506 1993504 TCTTTCTCTAAATAT TTTAATCAGCGAGG GGAT CTTCGCTGATTAAA GAAATAGCGGTAATG ftn 1993673 - 1994170 + | ferritin TERM 2483 1994178 - 1994199 + T 100 -17.3 -3.61178 | opp_overlap 1994167, overlap 1994177 AAAACTAATGCTCTC CGGCGGCAG GTTT CTGCCGCCG TTTCAAATCAGTGAC yecH 1994446 - 1994207 - | hypothetical protein TERM 2484 1994257 - 1994244 - G 77 -6.7 -4.57569 | opp_overlap 1994242 TGATCGGTCGAAAAA CCTTC TTCT GAAGG TATAAATTTGCCTTT TERM 2485 1995597 - 1995607 + G 72 -8.2 -3.7229 | overlap 1995595 CAATTACCTTTCTGC CGCC GTT GGCG TTTGCACTGTTTTAT tyrP 1994636 - 1995847 + | tyrosine transporter yecA 1996574 - 1995909 - | hypothetical protein TERM 2486 1996628 - 1996640 + r 78 -6.3 -4.69027 | CTTACATGCCGGTCC GTATC AGA GATAC TTTTTGAGTGGCTTT TERM 2487 1996723 - 1996710 - R 100 -8.1 -5.64274 | opp_overlap 1996710 GCAGGCACAAAAAAA CCACC CGAA GGTGG TTTCACGACACTGCT TERM 2488 1996811 - 1996831 + r 72 -10.5 -2.89742 | overlap 1996814 GCACAGCGCGAACGC CGAGGGATT TTA AATCCCTTG TGTCTACCGATTCCA TERM 2489 1996966 - 1996988 + r 73 -7.7 -4.13767 | CAGGCCTTTCAGCCA GACATCCGC TTGAC GCCGATGTC TTTTAAACTGGAGCG TERM 2490 1997030 - 1997046 + r 73 -10.9 -2.62616 | opp_overlap 1997009 TCGAACTCGAGACCT CGACCTT GGC AAGGTCG TGCTCTACCAACTGA pgsA 1997772 - 1997224 - | phosphatidylglycerophosphate synthetase uvrC 1999595 - 1997829 - | excinuclease ABC subunit C uvrY 2000278 - 1999658 - | response regulator TERM 2491 2000564 - 2000553 - H 73 -4.4 -4.80167 | CAGCAAAAATGAAAA TCAG CCCG CTGA ATATGTAACATTAAT TERM 2492 2000925 - 2000914 - g 81 -5.8 -4.77986 | TTAAAGATGGAAAAA CAGC TTGC GCTG ATCGAAGACGAAACC yecF 2000773 - 2000997 + | hypothetical protein TERM 2493 2001031 - 2001005 - T 100 -12.3 -4.70583 | opp_overlap 2001005 GTCAGTAATATAAAA CCGGCTGAGAG CGTGC CTTTCAGCCGG TTATTGACAAAATCA TERM 2494 2001005 - 2001031 + T 95 -14.5 -3.62046 | opp_overlap 2001005 GTCAGTAATATAAAA CCGGCTGAGAG CGTGC CTTTCAGCCGG TTATTGACAAAATCA sdiA 2001650 - 2001024 - | ftsQAZ gene transcriptional regulator cluster TERM 2495 2001839 - 2001869 + r 89 -5.3 -5.70522 | gap 1, opp_overlap 2001834 2001833, overlap 2001840 2001842 CGCTTGAAATGGCGT CCCGCCCCGACAGG TGAA TC-GTCGGGGCTGA TTTTTTCTTATTATT TERM 2496 2001840 - 2001868 + r 77 -8.8 -3.98653 | gap 1, opp_overlap 2001834 2001833, overlap 2001839 2001842 GCTTGAAATGGCGTC CCGCCCCGACAGG TGAA TC-GTCGGGGCTG ATTTTTTCTTATTAT TERM 2497 2001842 - 2001866 + r 75 -10 -3.54636 | gap 1, opp_overlap 2001834 2001833, overlap 2001840 2001839 TTGAAATGGCGTCCC GCCCCGACAGG TGAA TC-GTCGGGGC TGATTTTTTCTTATT yecC 2002632 - 2001880 - | putative amino-acid ABC transporter ATP-binding protein YecC yecS 2003297 - 2002629 - | putative transport system permease protein (former yecC) TERM 2498 2002854 - 2002842 - G 72 -7.7 -3.95787 | TACCAGACTGATAAA GCTGT TCG ACAGC GGCGGCAACGCCACC TERM 2499 2003146 - 2003131 - G 81 -4.6 -5.08178 | overlap 2003132 ATAGAGATATAAAAA CGCGCC AGCC AGCGCA CGGGCCAGATTGGCG yedO 2004298 - 2003312 - | D-cysteine desulfhydrase TERM 2500 2004364 - 2004383 + r 84 -4.9 -5.39755 | opp_overlap 2004365, overlap 2004365 ACGCGTAAATAAAAA AGGCGCT AGTGAA AGCGCCC TTTTTTGTCATTATG TERM 2501 2004365 - 2004382 + r 72 -8.4 -3.82226 | opp_overlap 2004365, overlap 2004364 CGCGTAAATAAAAAA GGCGCT AGTGAA AGCGCC CTTTTTTGTCATTAT TERM 2502 2004382 - 2004365 - R 100 -8.4 -5.63517 | opp_overlap 2004365 2004364 CGCGTAAATAAAAAA GGCGCT AGTGAA AGCGCC CTTTTTTGTCATTAT fliY 2005203 - 2004403 - | cystine transporter subunit TERM 2503 2004567 - 2004581 + g 84 -7.8 -4.63486 | CTTCACCGGTTACTG CCAGCG TAT CGTTGG TTTTCTTCACCAGAT TERM 2504 2004727 - 2004750 + g 79 -2.3 -5.22039 | CAGCCACTCTTCATA GTTGGTGCC CAGACC GACACCCAC TTTTTTGCCTTTCAG fliZ 2005842 - 2005291 - | protein FliZ fliA 2006577 - 2005888 - | flagellar biosynthesis sigma factor TERM 2505 2006002 - 2006025 + g 72 -4.6 -4.59773 | GAGATTCAGCTCTTC CTGGTAATAG AGGG TTAATACCAG TTTTTCGCGCTCCGG TERM 2506 2006564 - 2006552 - G 71 -9.1 -3.49653 | opp_overlap 2006551 2006550 ACCAGCGGGACATAA CGCTG CCA CAGCG AGTGTTTATCCATTA TERM 2507 2006735 - 2006751 + r 100 -15.1 -3.54459 | opp_overlap 2006735 GCCGAATGTAAAAAA CCCCGCC GGT GGCGGGG TTTGAGAGGCATTCA TERM 2508 2006751 - 2006735 - R 100 -15.1 -5.15969 | opp_overlap 2006735 GCCGAATGTAAAAAA CCCCGCC GGT GGCGGGG TTTGAGAGGCATTCA fliC 2008424 - 2006772 - | flagellin fliD 2008690 - 2010096 + | flagellar capping protein fliS 2010121 - 2010531 + | flagellar protein FliS fliT 2010531 - 2010896 + | flagellar biosynthesis protein FliT amyA 2010974 - 2012461 + | cytoplasmic alpha-amylase TERM 2509 2012466 - 2012488 + T 72 -10.5 -2.93853 | opp_overlap 2012464 2012463 2012467, overlap 2012465 AGGTGATTTAAATCC ATCCCCGGC GGCAA GCCGGGGAG ATTTCATTACGGCAG TERM 2510 2012487 - 2012467 - T 83 -14 -2.66272 | opp_overlap 2012466 2012465, overlap 2012464 2012463 GGTGATTTAAATCCA TCCCCGGC GGCAA GCCGGGGA GATTTCATTACGGCA TERM 2511 2012506 - 2012521 + T 74 -8.2 -3.85698 | TTCATTACGGCAGTG GCGTCG GTAA CGGCGC TTTATCCAGCGCGGC yedD 2012878 - 2012495 - | hypothetical protein yedE 2013095 - 2014300 + | putative inner membrane protein yedF 2014297 - 2014530 + | hypothetical protein TERM 2512 2014536 - 2014564 + T 77 -11.7 -2.77182 | opp_overlap 2014531 2014527 2014520, overlap 2014533 TCAGAAGTAATCCCT CATTCCCGCTGTG GCC CACAGCGGGAACA TCGTTACCTCTGACA TERM 2513 2015324 - 2015274 - T 82 -7.6 -4.66833 | gap 1, overlap 2015275 GGGTAATGTCAAAAA CCAGGGCGCGGAGTTAATTCAAC CTGTTT GTTGACATC-CTCCACGCCCTGA ATGACGAGGACCCCT TERM 2514 2015323 - 2015275 - T 70 -8.9 -3.39618 | gap 1, overlap 2015274 GGTAATGTCAAAAAC CAGGGCGCGGAGTTAATTCAAC CTGTTT GTTGACATC-CTCCACGCCCTG AATGACGAGGACCCC TERM 2515 2015346 - 2015363 + T 70 -9.9 -2.94888 | overlap 2015344 2015359 AGGACCCCTGCTACG TTCAGGC TGTC GCCTGAA TCATTTCGGTGGGTT SFV_1976 2016153 - 2015347 - | putative virulence protein TERM 2516 2015922 - 2015935 + g 73 -3.8 -4.83615 | overlap 2015909 2015907 GTCGCTGAAGTCTCG CCAG CGTCTT CTGG TTTTTCTGAAAACTG TERM 2517 2016210 - 2016241 + H 78 -6.6 -4.65895 | gap 1 CGAGCTTAACGCCCT GCGGATAGCGGAATG CAT CATTCTGTCA-CCGC TTTTTGAATCAGGGG TERM 2518 2017345 - 2017329 - H 77 -3.8 -5.25976 | AATTAAAAAAATAAA TTATGA GTCAA TCATAA ATAACAACCTTTAAT nmpC 2017566 - 2018648 + | outer membrane porin protein TERM 2519 2018698 - 2018663 - T 100 -14.2 -3.68529 | gap 1, overlap 2018665 ATCTGATTACTCAAA GATATGTTGTGGGAGGC TTT GCCTCCC-CAACATATA AGTGGCGCTCTCAAG TERM 2520 2018696 - 2018665 - T 100 -16.8 -3.42395 | gap 1, overlap 2018663 CTGATTACTCAAAGA TATGTTGTGGGAGGC TTT GCCTCCC-CAACATA TAAGTGGCGCTCTCA TERM 2521 2018771 - 2018790 + T 84 -7.8 -4.78107 | TTACCCTTTATTTTC TGGGACGT TTCA ACGCCCCA TTTTTAATAATACTC ybcM 2019934 - 2019137 - | putative regulator emrE 2021161 - 2020664 - | multidrug efflux protein fliE 2021655 - 2021341 - | flagellar hook-basal body protein FliE TERM 2522 2021467 - 2021481 + g 93 -8.6 -4.88067 | TAGCGCCACGCCGGG TTCACC GAG GGTGAA TTTTTCTGCCTGCGT TERM 2523 2022164 - 2022146 - H 70 -10.2 -2.52234 | opp_overlap 2022145, overlap 2022145 ATAAAGCTCACGAAC TGCGCCTG CGC CTGGCGCA ACAAGGTTTGCCCAA TERM 2524 2022886 - 2022870 - H 72 -5.7 -4.40882 | overlap 2022871 GACAAATCAAAATAA CCGCCAG CAG CAGGCGA GCACCACCAGCAATA TERM 2525 2023173 - 2023188 + H 76 -8.2 -4.07568 | opp_overlap 2023172 2023160 2023173 TAGCAGTGACGAAAG CGGCGG AGCA CTGCCG TTTTGGCAACAGCAA fliG 2023592 - 2024515 + | flagellar motor switch protein G fliH 2024508 - 2025194 + | flagellar assembly protein H TERM 2526 2025396 - 2025424 + G 70 -3.8 -4.72986 | overlap 2025398 ACGAAGTAGAAAGCG AAGTCGTTGGCT TTAAC GGTCAACGGCTG TTTTTAATGCCGCTG TERM 2527 2025527 - 2025510 - g 82 -11.3 -3.56099 | opp_overlap 2025523 2025525 CAGAAGGGCTGCAAA GCGGCAA GCAG TTGCCGC TCGGTCCGGCGTTAT TERM 2528 2025789 - 2025813 + G 74 -8.5 -3.95584 | TGATGGCACGTTACA CCCGCGCCGAT GTC ATTGTCGTGGG TTTGATTGGTGAACG TERM 2529 2026134 - 2026106 - g 74 -10.4 -3.53012 | opp_overlap 2026112 TCGGTGTTTGCCAAA TTACCGGCAC TGGTCGAGC GTGCCGGTAA TGGCATTAGCGGCGG fliI 2025194 - 2026567 + | flagellum-specific ATP synthase TERM 2530 2027718 - 2027699 - g 76 -7.9 -4.16842 | GCCAGGGGCAACAAA GTGCAGA GTTGCG TCTGCAC CCACAGGATTTAGGT fliK 2026927 - 2028054 + | flagellar hook-length control protein fliL 2028159 - 2028623 + | flagellar basal body-associated protein FliL fliM 2028583 - 2029632 + | flagellar motor switch protein FliM TERM 2531 2029738 - 2029726 - g 74 -2.6 -5.12617 | opp_overlap 2029729, overlap 2029715 CAACCAGCGAAAAAA GCGC TGCCG ACGC GGTGTTCCAGCAATT fliN 2029629 - 2030042 + | flagellar motor switch protein FliN fliO 2030045 - 2030410 + | flagellar biosynthesis protein FliO TERM 2532 2030809 - 2030797 - g 70 -4.7 -4.57073 | opp_overlap 2030801, overlap 2030799 GAGGCGCTGGAAAAA GGGGC GCA GCCGC TGCGTGAGTTTATGC fliP 2030410 - 2031147 + | flagellar biosynthesis protein FliP fliQ 2031157 - 2031426 + | flagellar biosynthesis protein FliQ TERM 2533 2032121 - 2032147 + G 72 -4.4 -4.58685 | overlap 2032103 2032123 CGGCATCTCTTTAAT GGCGGCATTAAT GCC GTTAATTGCGCC TTTTTGCGAACATTT fliR 2031435 - 2032220 + | flagellar biosynthesis protein FliR rcsA 2032505 - 2033128 + | positive regulator for ctr capsule biosynthesis, positive transcription factor TERM 2534 2033164 - 2033131 - T 85 -13.9 -3.04248 | opp_overlap 2033125 2033124, overlap 2033121 2033133 CAACATGCGCTAACA CATTCTGACTGGTGG TTTC CCACCAGTCAGGCTG AATAAGATTACTCTG TERM 2535 2033162 - 2033133 - T 73 -10.7 -3.07522 | opp_overlap 2033125 2033124, overlap 2033131 ACATGCGCTAACACA TTCTGACTGGTGG TTTC CCACCAGTCAGGC TGAATAAGATTACTC dsrB 2033420 - 2033172 - | hypothetical protein SFV_1996 2033523 - 2033750 + | hypothetical protein TERM 2536 2033789 - 2033767 - T 100 -9.9 -5.88565 | gap 1 TGCACAATAAAAAAA TCCCGAC-CC TGAG GGTGTCGGGA TGAAACTTGCTTAAG SFV_1998 2036344 - 2034860 - | hypothetical protein TERM 2537 2034928 - 2034916 - G 73 -9.1 -3.64703 | GTTTTGCGAGGTAAA GCCGA CGG TCGGC CAATGACTGGAGTTG TERM 2538 2036671 - 2036722 + r 79 -10.2 -3.64049 | gap 1, opp_overlap 2036687, overlap 2036682 ACTATCATTCATTGC AGGCATTG-GGACACCAGGCCGGAT GTG ATCCGGCCTGGTGTTAATGATACCC TTTCAAACTTCTTCC TERM 2539 2036682 - 2036710 + r 100 -23.3 -3.22491 | opp_overlap 2036687, overlap 2036671 TTGCAGGCATTGGGA CACCAGGCCGGAT GTG ATCCGGCCTGGTG TTAATGATACCCTTT TERM 2540 2036705 - 2036687 - R 86 -14.6 -2.62983 | opp_overlap 2036682 2036671 GGCATTGGGACACCA GGCCGGAT GTG ATCCGGCC TGGTGTTAATGATAC yedI 2037903 - 2036986 - | hypothetical protein yedA 2038076 - 2038996 + | hypothetical protein vsr 2039455 - 2038985 - | DNA mismatch endonuclease, patch repair protein dcm 2040854 - 2039436 - | DNA cytosine methylase TERM 2541 2040123 - 2040145 + g 75 -4.9 -4.78752 | gap 1, overlap 2040140 GCCCAGTTCGTCCAG CG-TCTGCAT GATG ATGCGGAACG TTTTTCCCTTATCGT TERM 2542 2040883 - 2040863 - R 83 -13.3 -3.15999 | CCTGCATAGATTTAA CCGGCCATC TGA GATGGCCGA CAGGTTAACATAATT yedJ 2041422 - 2040967 - | hypothetical protein SFV_2004 2042571 - 2041759 - | ISEhe3 orfB SFV_2005 2042906 - 2042628 - | ISEhe3 orfA TERM 2543 2043423 - 2043412 - gR 70 -5.8 -4.17789 | opp_overlap 2043412 CAACTACAAAGCAAA TGGC GATG GCCA TGGTTTATCTGCAAC SFV_2007 2044650 - 2043745 - | insertion element IS2 transposase InsD SFV_2006 2042933 - 2043820 + | putative outer membrane pore protein SFV_2008 2044973 - 2044608 - | insertion sequence 2 OrfA protein SFV_2009 2045037 - 2045246 + | putative outer membrane protein TERM 2544 2045319 - 2045290 - T 84 -13.7 -2.89741 | opp_overlap 2045290, overlap 2045287 2045285 2045282 2045280 TAAAACATAACACCA GCCTGAGTTCG TCCCTCAT CGAACTCAGGC TTTTTTATTGGCATT TERM 2545 2045290 - 2045319 + T 100 -13.7 -5.4756 | opp_overlap 2045290 2045287 2045285 2045282 2045280 TAAAACATAACACCA GCCTGAGTTCG TCCCTCAT CGAACTCAGGC TTTTTTATTGGCATT SFV_2010 2045993 - 2045718 - | putative IS1 encoded protein insB 2046068 - 2046571 + | IS1 ORF2 yedU 2046617 - 2047468 + | chaperone protein HchA TERM 2546 2047504 - 2047536 + T 100 -12.8 -5.055 | opp_overlap 2047503 2047504 AAGCGCATAATCAAT CGCAGCCACGTT AATACTCAC GACGTGGCTGCG TTTTTTCACGGTTAA TERM 2547 2047536 - 2047504 - T 76 -12.1 -2.67017 | opp_overlap 2047504, overlap 2047503 AAGCGCATAATCAAT CGCAGCCACGT TAATACTCACG ACGTGGCTGCG TTTTTTCACGGTTAA yedV 2048934 - 2047576 - | putative 2-component sensor protein yedW 2049716 - 2048934 - | transcriptional regulatory protein YedW SFV_2015 2049738 - 2050151 + | hypothetical protein TERM 2548 2050224 - 2050169 - f 72 -6.3 -4.323 | gap 2, opp_overlap 2050169 CGTAAATATGTAAAA GCTGATCTCTGCT-A-CTGTTAGGGAG GTGA CTCCCTGACAGATTAACAGTAAACAGC TCTTGTTGGTTAACG SFV_2017 2051265 - 2051900 + | putative sulfite oxidase subunit YedZ SFV_2018 2052158 - 2052808 + | hypothetical protein TERM 2549 2052786 - 2052808 + T 81 -3.4 -5.44119 | overlap 2052791 GTAGCGAAGAAGTGG TCGAGGAGAT GAT GTCTCATTGA TTTTTTTGCGCTGAC TERM 2550 2052898 - 2052922 + T 100 -9.4 -5.62045 | gap 1, opp_overlap 2052898 2052895 AGTAAGACAAACTCA GACACG-CTCA TACT TGAGTCGTGTC TTTTTTATTATGTCT TERM 2551 2053588 - 2053574 - T 78 -5.8 -4.77986 | opp_overlap 2053573 TCAAAGAGTTAAAAA TTTTTC TTG GAAAAA ATGTCTTAAAATCGT TERM 2552 2053839 - 2053871 + T 100 -8.4 -5.63236 | gap 1, opp_overlap 2053785 2053839 AAGTTTACCAGCCAA CCGCAG-CACGTCCT GCAT ACGTCGTGTCTGCGG TTTTTCTTTTTCGCT SFV_2019 2054155 - 2053886 - | hypothetical protein SFV_2020 2054224 - 2054880 + | unknown protein encoded within prophage TERM 2553 2054920 - 2054888 - f 86 -13.6 -3.16564 | gap 1, opp_overlap 2054888 AAAAATAGCATCCAA CCGCAGCACGTTCTT GCTT AAGA-CGTGCTACGG TTTCCTTTACGATTT TERM 2554 2054888 - 2054920 + F 89 -11.4 -4.08919 | gap 1, opp_overlap 2054888 AAAAATAGCATCCAA CCGCAGCACGTTCTT GCTT AAGA-CGTGCTACGG TTTCCTTTACGATTT ipaH_4 2055196 - 2056839 + | invasion plasmid antigen TERM 2555 2056904 - 2056881 - T 93 -10.2 -4.58395 | opp_overlap 2056893 2056894, overlap 2056883 CTGACTCCGGAAAAA CAGAGGCCCG CCCC CGGGCCTCCC CGGATTCATCCGTTT TERM 2556 2056902 - 2056883 - T 100 -15 -3.90762 | opp_overlap 2056893 2056894, overlap 2056881 GACTCCGGAAAAACA GAGGCCCG CCCC CGGGCCTC CCCGGATTCATCCGT SFV_2022 2057396 - 2057019 - | hypothetical protein SFV_2023 2058252 - 2057539 - | IS600 ORF2 SFV_2024 2058695 - 2058393 - | IS600 ORF1 SFV_2025 2059120 - 2058752 - | ISSfl4 ORF3 TERM 2557 2059320 - 2059337 + r 79 -9.1 -4.19238 | overlap 2059308 TCTTCCAGAAGATTT CTGGCTG TGTT CAGCCGG TTTTCCAGTTCCGAC SFV_2026 2059573 - 2059298 - | ISSfl4 ORF3 TERM 2558 2059342 - 2059379 + g 70 -6.2 -4.1585 | overlap 2059343 2059347 TGTTCAGCCGGTTTT CCAGTTCCGACAGTCG TTTTTC TGCCTGTCGGATCTGA TTTTCAAGCTTATGA SFV_2027 2059920 - 2059570 - | ISSfl4 ORF2 SFV_2028 2060591 - 2059917 - | ISSfl4 ORF1 TERM 2559 2060255 - 2060243 - G 73 -9.1 -3.62046 | CGATCCGGGCAACAA CAGCC CCA GGCTG TAACGCCTGCTTAGC TERM 2560 2060595 - 2060622 + r 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG SFV_2029 2060905 - 2060690 - | hypothetical protein TERM 2561 2060988 - 2060977 - R 93 -7.2 -5.79595 | TTTGAAAAGAAAAAA CCGC AAAA GCGG GCGAAACGATATATA TERM 2562 2061609 - 2061644 + r 89 -11.2 -4.14243 | opp_overlap 2061619, overlap 2061614 2061619 TATCCGAGATAAGTG GCACAAAAAACCCGCT TGTG GGCGGGTTTTGTTTGC TTTTGCCATCACGTA TERM 2563 2061614 - 2061639 + r 79 -8.3 -4.20806 | opp_overlap 2061619, overlap 2061609 2061619 GAGATAAGTGGCACA AAAAACCCGCT TGTG GGCGGGTTTTG TTTGCTTTTGCCATC TERM 2564 2061634 - 2061619 - R 91 -7.5 -5.25803 | opp_overlap 2061614 2061609 2061619 AAGTGGCACAAAAAA CCCGC TTGTGG GCGGG TTTTGTTTGCTTTTG TERM 2565 2061619 - 2061634 + r 91 -8.2 -5.08483 | opp_overlap 2061619, overlap 2061614 2061609 AAGTGGCACAAAAAA CCCGCT TGTG GGCGGG TTTTGTTTGCTTTTG SFV_2035 2062750 - 2062385 - | putative endonuclease encoded by cryptic prophage SFV_2036 2063377 - 2062751 - | hypothetical protein SFV_2037 2063809 - 2063393 - | hypothetical protein TERM 2566 2064021 - 2064053 + r 73 -11.2 -2.60219 | gap 1, opp_overlap 2064022 2064023, overlap 2064020 TTTGAATGCATGAGA AC-GCCGCCCGTGCC TGCT GGCAGGGGCGGCAGA GTTATCCGAATTGTA TERM 2567 2064051 - 2064022 - R 100 -17.1 -3.44319 | opp_overlap 2064021 2064020, overlap 2064023 TTGAATGCATGAGAA CGCCGCCCGTGCC TGCT GGCAGGGGCGGCA GAGTTATCCGAATTG TERM 2568 2064050 - 2064023 - R 100 -18.4 -2.6627 | opp_overlap 2064021 2064020, overlap 2064022 TGAATGCATGAGAAC GCCGCCCGTGCC TGCT GGCAGGGGCGGC AGAGTTATCCGAATT TERM 2569 2064173 - 2064186 + r 70 -9.5 -3.06183 | opp_overlap 2064173 CCAGAAAAAACAAAA CCCGC CGAA GCGGG TTAAGTGCGGGTGCG TERM 2570 2064186 - 2064173 - R 100 -9.5 -5.49579 | opp_overlap 2064173 CCAGAAAAAACAAAA CCCGC CGAA GCGGG TTAAGTGCGGGTGCG TERM 2571 2064383 - 2064398 + r 83 -9 -4.36411 | opp_overlap 2064382 2064383 ACAGATGACGATAAG GGCGAT TAAC ATCGCC TTTTGCTGCTTCATA TERM 2572 2064477 - 2064527 + r 100 -12.1 -4.64844 | gap 1 TTCAGCATGGATTGA GCCTCAGATTAATGTTAAGCGTCT TGCA GGACGCGTAATGTTAA-CTGGGGC TTTTCTCTATCTGCC TERM 2573 2064737 - 2064722 - R 79 -3.2 -5.42862 | overlap 2064710 ACACCCCTAAAAAAA GGGCAT TTAT ATGTCC AAACATTAATATCAA SFV_2038 2065630 - 2065064 - | hypothetical protein insB 2065744 - 2066247 + | IS1 ORF2 SFV_2040 2066684 - 2066379 - | hypothetical protein TERM 2574 2066567 - 2066584 + g 76 -12.7 -2.55351 | opp_overlap 2066560, overlap 2066566 TGTAGTAACGCCACG GGCAGGG GATC CCCTGCC GTTCGTATGAACGGC insB 2067226 - 2066723 - | IS1 ORF2 SFV_2042 2067301 - 2067507 + | putative IS1 encoded protein SFV_2043 2067629 - 2068666 + | putative integrase for prophage CP-933U SFV_2045 2068877 - 2069674 + | hypothetical protein TERM 2575 2070859 - 2070847 - g 72 -5.5 -4.56597 | opp_overlap 2070847, overlap 2070849 GCCGCGGGGCAAAAA TGCGA ATG CCGCA TATCGTCCCCCTCTC SFV_2047 2070525 - 2071274 + | putative integrase TERM 2576 2071310 - 2071328 + T 82 -11 -3.60814 | opp_overlap 2071307 2071304 TCTGGCAAATTACCA CCACCTCT ACA GGAGGTGG TTCTATATAGACTTT SFV_2048 2071947 - 2071381 - | IS911 ORF2 TERM 2577 2071789 - 2071800 + g 77 -5.8 -4.63218 | opp_overlap 2071785 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SFV_2049 2072550 - 2072248 - | IS911 ORF1 SFV_2051 2073177 - 2073479 + | IS600 ORF1 SFV_2052 2073620 - 2074333 + | IS600 ORF2 TERM 2578 2074590 - 2074613 + F 100 -15.4 -3.78096 | CGCTCGTGATAGCCT GGCGAAGATC ATCC GATCTTCGCC TTATACTTTTGTTTC TERM 2579 2075205 - 2075223 + G 84 -7.4 -4.65895 | overlap 2075207 CCCCGCTATCGCATT TTGATGCG CGC CGCGTCGA TTTTTCCCTCGCACG TERM 2580 2075463 - 2075475 + G 72 -7.7 -3.91084 | opp_overlap 2075461 2075459 2075458 2075463 GGAAAAAACACCAGA TGCCA GCA TGGCA TTTAATTACCGCTGA amn 2074685 - 2076139 + | AMP nucleosidase SFV_2054 2076482 - 2077198 + | hypothetical protein TERM 2581 2077206 - 2077240 + T 84 -13.9 -2.90382 | opp_overlap 2077211 2077215, overlap 2077211 2077215 ATCTCTAATTATATT TTAAAGAAATCTGTC TTTAT GGCAGATTTCTTTAA TCTCATATAATTCTT TERM 2582 2077211 - 2077235 + T 77 -9.4 -3.8766 | opp_overlap 2077211 2077215, overlap 2077206 2077215 TAATTATATTTTAAA GAAATCTGTC TTTAT GGCAGATTTC TTTAATCTCATATAA TERM 2583 2077314 - 2077299 - T 75 -3.2 -5.24531 | ATTGCTTATAAAAAA TCCCCG TCCC CAGAGA AATAATATTTATTAA TERM 2584 2077591 - 2077563 - T 100 -19 -5.4387 | opp_overlap 2077558 2077557 ACAGAAATCAAAAAA CCCGGCCACTTT TTTAC AAAGTGGCCGGG TAAAAATAATTTTTA TERM 2585 2077592 - 2077606 + T 79 -4.4 -5.13473 | overlap 2077558 2077557 TACAAAGTGGCCGGG TAAAAA TAA TTTTTA TTTTTTAACTGTCCT SFV_2056 2078636 - 2078139 - | hypothetical protein SFV_2057 2079127 - 2078627 - | hypothetical protein TERM 2586 2078707 - 2078727 + g 72 -6.2 -4.43681 | TAAGAATATTCAGGC TACCGTTA ATCAG TAGCGGTA TTTTCGTATTCCCTG TERM 2587 2079043 - 2079033 - G 85 -3.2 -5.42862 | ATAGCTGCAAAAAAA GCCA TAA TGAC CATATTGAAGCTGTC TERM 2588 2079568 - 2079550 - R 95 -11.7 -4.12942 | opp_overlap 2079550 2079559 CCAAATTTCTGAAAA GCCCGCT TTTAT AGCGGGC TTTTTGCTATATCTG TERM 2589 2079550 - 2079568 + r 100 -11.7 -4.86133 | opp_overlap 2079550, overlap 2079559 CCAAATTTCTGAAAA GCCCGCT TTTAT AGCGGGC TTTTTGCTATATCTG cbl 2080525 - 2079575 - | transcriptional regulator Cbl nac 2081544 - 2080627 - | nitrogen assimilation transcriptional regulator TERM 2590 2081098 - 2081136 + g 78 -5.4 -4.8622 | AGCCACAGGGGAATG CTCATAAATCACCGCC ATATCGA GTTGGTGATTTATCAG TTTTTCGTTAAGCAC TERM 2591 2081953 - 2081982 + r 80 -12.3 -3.02946 | opp_overlap 2081959, overlap 2081959 AGAGGAGCCAAATTC AAAAAAGCCTGCT TTTG AGCAGGCTTTTTA CTTTCTAATTACCAA TERM 2592 2081959 - 2081976 + r 100 -11.3 -5.05505 | opp_overlap 2081959, overlap 2081953 GCCAAATTCAAAAAA GCCTGCT TTTG AGCAGGC TTTTTACTTTCTAAT TERM 2593 2081976 - 2081959 - R 100 -11.3 -5.22039 | opp_overlap 2081959 2081953 GCCAAATTCAAAAAA GCCTGCT TTTG AGCAGGC TTTTTACTTTCTAAT erfK 2082938 - 2082003 - | hypothetical protein cobT 2084079 - 2083000 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobS 2084834 - 2084091 - | cobalamin synthase cobU 2085376 - 2084831 - | adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase TERM 2594 2086263 - 2086303 + r 100 -15.7 -3.58726 | opp_overlap 2086274, overlap 2086264 2086274 TCCACGGTGACGTTT TCATATTCAAATCTCCTGC AAT GTGGGAGATTTGAGTATGG TTGTCTCTCAAGAGC TERM 2595 2086264 - 2086302 + r 95 -17 -2.75022 | opp_overlap 2086274, overlap 2086263 2086274 CCACGGTGACGTTTT CATATTCAAATCTCCTGC AAT GTGGGAGATTTGAGTATG GTTGTCTCTCAAGAG SFV_2066 2087215 - 2086373 - | hypothetical protein SFV_2067 2087736 - 2087861 + | IS600 ORF1 SFV_2068 2088002 - 2088742 + | IS600 ORF2 TERM 2596 2088803 - 2088791 - T 72 -9.1 -3.62046 | CGATCCGGGCAACAA CAGCC CCA GGCTG TAACGCCTGCTTAGC TERM 2597 2089143 - 2089170 + T 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG SFV_2069 2090057 - 2089218 - | putative integrase of prophage sbcB 2090239 - 2091663 + | exonuclease I yeeD 2091933 - 2091706 - | hypothetical protein yeeE 2092951 - 2091947 - | putative transport system permease protein TERM 2598 2093163 - 2093136 - R 100 -12.8 -6.04419 | opp_overlap 2093136 AAAAGAATAAAAAAA CCGGAGCCAAAT GTTC ATTCGACTCCGG TTTATTATTAGAAAA TERM 2599 2093136 - 2093163 + r 81 -8.4 -4.44667 | opp_overlap 2093136 AAAAGAATAAAAAAA CCGGAGCCAAAT GTTC ATTCGACTCCGG TTTATTATTAGAAAA yeeF 2094542 - 2093184 - | putative amino acid/amine transport protein TERM 2600 2094723 - 2094697 - R 87 -7.3 -5.26875 | opp_overlap 2094700, overlap 2094700 GTTTGAAGCAAAAAA TAACCGACGCT AATTA AACGTCGGTTT TTAATCATTTTTTGA TERM 2601 2094700 - 2094720 + r 82 -6.8 -4.88129 | opp_overlap 2094697 2094700 TGAAGCAAAAAATAA CCGACGCT AATTA AACGTCGG TTTTTAATCATTTTT TERM 2602 2094720 - 2094700 - R 89 -9 -4.72473 | opp_overlap 2094700, overlap 2094697 TGAAGCAAAAAATAA CCGACGCT AATTA AACGTCGG TTTTTAATCATTTTT yeeY 2095738 - 2094755 - | LysR family transcriptional regulator SFV_2075 2096608 - 2095784 - | putative enzyme of sugar metabolism SFV_2076 2096945 - 2096691 - | hypothetical protein insB 2097470 - 2096967 - | IS1 ORF2 yefM 2097970 - 2097698 - | antitoxin YefM TERM 2603 2098359 - 2098385 + H 100 -19.5 -5.4505 | opp_overlap 2098359 TGAACGCATGAGAAA GCCCCCGGAAG ATCAC CTTCCGGGGGC TTTTTTATTGCGCGG TERM 2604 2098385 - 2098359 - H 100 -20.2 -3.99405 | opp_overlap 2098359 TGAACGCATGAGAAA GCCCCCGGAAGA TCA CCTTCCGGGGGC TTTTTTATTGCGCGG TERM 2605 2098743 - 2098755 + G 81 -10.5 -3.64703 | CGTCGTCTGGATTTC GGCGG CTG CCGCC TTTCGCTGGCAACGC TERM 2606 2099296 - 2099286 - g 70 -6.8 -4.00407 | opp_overlap 2099289, overlap 2099289 ATGGAAAAACTGAAA GCAC TGG GTGC CAGTTCAATCCTGGT hisG 2098440 - 2099339 + | ATP phosphoribosyltransferase hisD 2099345 - 2100649 + | histidinol dehydrogenase TERM 2607 2101505 - 2101519 + G 72 -7.1 -4.16943 | opp_overlap 2101502 2101503 2101500 CACTGAAAGAGATCC CCTGC GTGGA GCAGG TTTTCGACTCTGAAA hisC 2100646 - 2101716 + | histidinol-phosphate aminotransferase TERM 2608 2102467 - 2102480 + G 70 -5.9 -4.28487 | opp_overlap 2102467, overlap 2102456 2102462 CCCTCGGCGACAAAC GCGGT ATTT GCCGC TTTGGTTTTGTGCTG hisB 2101716 - 2102783 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 2102783 - 2103373 + | imidazole glycerol phosphate synthase subunit HisH hisA 2103373 - 2104110 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisF 2104092 - 2104868 + | imidazole glycerol phosphate synthase subunit HisF hisI 2104862 - 2105473 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2609 2105635 - 2105610 - T 100 -14.7 -5.75945 | opp_overlap 2105610 ATCCGGCAAAAAAAA CGGGCATGGTG TCAC CACCCTGCCCG TTTCTCTTAAATGCA TERM 2610 2105610 - 2105635 + T 100 -14.7 -4.21607 | opp_overlap 2105610 ATCCGGCAAAAAAAA CGGGCATGGTG TCAC CACCCTGCCCG TTTCTCTTAAATGCA wzzB 2106672 - 2105659 - | regulator of length of O-antigen component of lipopolysaccharide chains TERM 2611 2106078 - 2106106 + g 72 -4.5 -4.65895 | GCTCCTGCGCGACCA CTTCCTGGGTTCT TAA AGAGTCCTGCAAG TTTTTCCGTCCCAGA TERM 2612 2106771 - 2106751 - R 76 -8.3 -4.0865 | TGTAACAAAAGACAA TCAGGGC GTAAATA GCCCTGA TAACAAGATGTTAGT TERM 2613 2107554 - 2107538 - R 76 -8.7 -4.07687 | opp_overlap 2107538 2107539, overlap 2107539 ATCGCTGCGGTAAAA CCAACGG GAA CCGTTGA TTTGATGACCATAAC TERM 2614 2107553 - 2107539 - R 70 -10 -3.04398 | opp_overlap 2107538 2107539, overlap 2107538 TCGCTGCGGTAAAAC CAACGG GAA CCGTTG ATTTGATGACCATAA TERM 2615 2107942 - 2107970 + r 76 -8.3 -4.1196 | opp_overlap 2107963, overlap 2107943 CTGTGAATCATGATG TTTTTAGCATCGT GAT AAGATGCTAAAAG TTTTAACGCTACGTT TERM 2616 2107943 - 2107969 + r 70 -9.6 -3.06694 | opp_overlap 2107963, overlap 2107942 TGTGAATCATGATGT TTTTAGCATCGT GAT AAGATGCTAAAA GTTTTAACGCTACGT TERM 2617 2108124 - 2108102 - R 100 -11.2 -5.75945 | opp_overlap 2108101 ATTTGGCAAAAAAAA GCCCGGTGCA ATA TACGCCGGGC CTCAATTTTATTGTT gnd 2109558 - 2108152 - | 6-phosphogluconate dehydrogenase SFV_2090 2111325 - 2110675 - | hypothetical protein TERM 2618 2110993 - 2110967 - G 70 -5.2 -4.43213 | opp_overlap 2110975, overlap 2110968 GGGAACAGAGGAAAA CGCAAATATTGT TCA ACAACAATTGCA TGGTGCTCAACTAAT TERM 2619 2111225 - 2111202 - G 70 -4 -4.6644 | overlap 2111213 AACACACCGTAAAAA TTAAAAAGAT AGCA ATCTTATTAA ATTGCCCGACCATGC rfc 2113973 - 2112825 - | O-antigen polymerase TERM 2620 2112978 - 2112991 + g 80 -5.3 -5.00846 | opp_overlap 2112971 2112978 AAAAAGTATTAACGA CATCA TTAA TGATG TTTTTGTACTATTTA TERM 2621 2113483 - 2113471 - G 100 -6.9 -5.76949 | GATTTGGAAAAAAAA GCCCC ATC GGGAC GAAAAAAGAACTCGC rfbG 2114898 - 2113993 - | dTDP-rhamnosyl transferase TERM 2622 2114246 - 2114261 + g 74 -7.6 -4.00684 | overlap 2114257 ACTTGGTTGTTTTCA TGCTGT CTGT ACAGCA TTGTTGGTTTTCTAT TERM 2623 2114788 - 2114799 + g 81 -4.4 -5.11063 | opp_overlap 2114788 TGATATAAAAATTGA GATG TCTA CATC TTTTTGTTCAATAAT rfbF 2115652 - 2114891 - | dTDP-rhamnosyl transferase rfbE 2117067 - 2115811 - | polysaccharide biosynthesis protein TERM 2624 2115965 - 2115939 - G 71 -2.2 -4.94487 | overlap 2115941 CCATAAAATACAAAA GGGCTAAATAAG GAA CCAATTCAGCAC AATGAATCAAAGCAG rfbC 2117628 - 2117083 - | dTDP-6-deoxy-L-mannose-dehydrogenase rfbA 2118511 - 2117633 - | glucose-1-phosphate thymidylyltransferase TERM 2625 2117991 - 2118006 + g 71 -3.3 -4.8622 | TAGAAATAAAGCCCA GTAAC CGCATA GTTAC TTTTTGGTTCCAGCG TERM 2626 2118525 - 2118565 + r 79 -8.3 -4.2528 | opp_overlap 2118533 ATTTCACCATTCCTT TTAATTCATCTCGCTCTAG CAT CATGAGCGAGATGCAATAA TTTGTTAAATTGCCG rfbD 2119469 - 2118570 - | dTDP-4-dehydrorhamnose reductase rfbB 2120554 - 2119469 - | dTDP-glucose 4,6 dehydratase galF 2121820 - 2120927 - | UTP--glucose-1-phosphate uridylyltransferase subunit GalF TERM 2627 2122114 - 2122129 + r 76 -4 -5.03314 | CATGAACATTTGCAA GAGACA GCAG TGTTTC TTTTTTCGCCATAAA TERM 2628 2123351 - 2123333 - R 74 -10.3 -3.18383 | AGGGGTATGGAGGAA GGCAAGC GCCGA GCTTGCC GTCAGGAAGGTGCGT wcaL 2124620 - 2123400 - | putative colanic acid biosynthesis glycosyl transferase TERM 2629 2124035 - 2124046 + g 86 -5.8 -5.03145 | CGGCGATTTTTTCTC TGGG GCAG CCCA TTTTTTGCAGCCTTC wcaK 2125897 - 2124617 - | putative pyruvyl transferase TERM 2630 2125978 - 2126030 + r 87 -10.6 -4.08216 | gap 1, opp_overlap 2126012 2126027, overlap 2125965 2125968 2126013 GATGCGACGCTGGCG CGTCTTATCAGGCCTACAGGTCCCG AGCA CAGAACC-GTAGGACGGATAAGGCG TTTTACGCCGCATCC TERM 2631 2126039 - 2126027 - R 70 -9.1 -3.37796 | opp_overlap 2125978 2126013 CCGTAGGACGGATAA GGCGT TTT ACGCC GCATCCGGCAACCGT wzxC 2127555 - 2126077 - | colanic acid exporter wcaJ 2128951 - 2127557 - | putative UDP-glucose lipid carrier transferase TERM 2632 2130403 - 2130425 + r 81 -3.4 -5.3658 | overlap 2130410 TTTTTCAGGCAATAG TTGGCCCT GACCGAA ACGGCCAA TTTTATTTTTGTCGT TERM 2633 2130523 - 2130508 - R 72 -5.4 -4.3898 | gap 1, overlap 2130513 ATCAGGCCTACAAAA CCGAACC GTA GGT-CGG ATAAGGCGTTCACGC TERM 2634 2130554 - 2130513 - R 79 -11.5 -3.41587 | opp_overlap 2130537, overlap 2130508 2130529 GCCTACAAAACCGAA CCGTAGGTCGGATAAGGCG TTCA CGCCGCATCCGACAAACAG CGCCTGATGCGACAT cpsB 2131889 - 2130570 - | mannose-1-phosphate guanyltransferase wcaI 2133232 - 2132009 - | glycosyl transferase TERM 2635 2132376 - 2132400 + g 76 -3.5 -5.00616 | overlap 2132378 GGGAAAAATTGCATG TTGCGCAGT CCACGCT GCTGCGCCA TTTTTTCCAGCCGCG wcaH 2133708 - 2133229 - | GDP-mannose mannosyl hydrolase wcaG 2134676 - 2133708 - | putative nucleotide di-P-sugar epimerase or dehydratase gmd 2135800 - 2134679 - | GDP-D-mannose dehydratase wcaF 2136374 - 2135826 - | putative colanic acid biosynthesis acetyltransferase WcaF SFV_2112 2136689 - 2136390 - | putative IS1 encoded protein insB 2136764 - 2137267 + | IS1 ORF2 wcaE 2137910 - 2137278 - | putative colanic acid biosynthesis glycosyl transferase wcaD 2139141 - 2137924 - | putative colanic acid biosynthesis protein TERM 2636 2138808 - 2138795 - GR 78 -5.3 -4.84146 | ACCAGATAAAAGAAA CGTAA TATC TTACG ATGGTTGTGTGGCGA TERM 2637 2139056 - 2139071 + gr 70 -6.1 -4.19238 | GTGATGGGGAAACTT TCGCC AAGCTG GGCGA TTTTGACGTTAACCA wcaC 2140333 - 2139116 - | glycosyl transferase TERM 2638 2140145 - 2140127 - GR 70 -6.7 -4.09503 | opp_overlap 2140139 AAACAGACGAAACAA CGCAATG TTCGC CATCGCG GTCATCCGCGGCGTA wcaB 2140818 - 2140330 - | putative colanic acid biosynthesis acetyltransferase WcaB wcaA 2141660 - 2140821 - | glycosyl transferase SFV_2119 2143915 - 2141753 - | tyrosine kinase TERM 2639 2143700 - 2143715 + g 72 -6.1 -4.33767 | GCCGATATCCTGCAC CAGCG AATTGC CGCTG TTTTGCTCGATTTGT wzb 2144361 - 2143918 - | tyrosine phosphatase wza 2145491 - 2144367 - | putative polysaccharide export protein TERM 2640 2146939 - 2146895 - g 95 -15.7 -2.90075 | opp_overlap 2146904 TTTCCGCTAATCAGA CGCTACGCCAGCGGACTACCG AAG CGGTAATGCGCCTGCTTAGCG GGCAAAAAGAAGATG TERM 2641 2147581 - 2147569 - g 70 -4.1 -4.72272 | overlap 2147570 CCGCTGGATGAAAAA CGTGA ATA TCACA CCATTGCCGGGCTGT yegH 2146099 - 2147748 + | putative transport protein asmA 2150053 - 2148200 - | putative assembly protein TERM 2642 2149187 - 2149216 + g 70 -7.1 -4.128 | GTCAAGATTCAGTTG CGGGAATTGCAGT CTCA GCTGCCATTCCGG TTTCTCTGTCAGCGT dcd 2150656 - 2150075 - | deoxycytidine triphosphate deaminase udk 2151443 - 2150748 - | uridine kinase TERM 2643 2150789 - 2150799 + g 70 -4.6 -4.56597 | opp_overlap 2150785 2150783 CTTTCAATATATCGA TCGC GAT GCGG TTTTTCCCGCCGCGC TERM 2644 2151855 - 2151874 + r 70 -5 -4.38712 | gap 1, overlap 2151858 CACTGTGGTTCCCGA CGTCCATCA TGA TGGTGG-CG TTTTATCGCCATGCC SFV_2126 2153347 - 2152151 - | ISSfl2 ORF TERM 2645 2153184 - 2153209 + g 71 -3.3 -4.74518 | gap 1, opp_overlap 2153164, overlap 2153170 2153185 ATCTGACCATGTTGT TTCAGGTCAGAT ATT AGC-GACCTGAG TTTGTTTTCGTCGTT TERM 2646 2153969 - 2153959 - g 72 -5.4 -4.56597 | CGCTGGCTTTAAAAA GAGT GGA ACTC GGCATTGTGACGTTC SFV_2127 2153781 - 2154440 + | hypothetical protein TERM 2647 2154425 - 2154452 + F 74 -8.4 -3.92373 | overlap 2154428 GGAAGCGCCAAAAGG CTGGACGTCAGT GTGA GCTGGCGTCTGG TTTATGCATCCGCTG TERM 2648 2154701 - 2154722 + G 72 -5.2 -4.56597 | gap 1, overlap 2154702 CTCGCCACGGATATT GT-GCTGAC CGTTC GTCAGCGAC TTTTTGCCGAGGCGG TERM 2649 2154932 - 2154948 + G 71 -9.5 -3.53444 | ACCGATGAAGATGCC GTTTCCA GAC TGGAAAC TTTCACCAGCACTGA SFV_2128 2154437 - 2155198 + | hypothetical protein SFV_2129 2155195 - 2156718 + | putative chaperonin TERM 2650 2157140 - 2157100 - T 80 -6.1 -4.83615 | gap 1, opp_overlap 2157101, overlap 2157101 CAGGCGGCAGAAAAA CTGGCTCAGGCGCAGGCT GATTTA AGCC-GCTGCTGAGCCAT TTTCTTTTAACGAAA TERM 2651 2157101 - 2157139 + T 100 -9.6 -5.07652 | gap 1, opp_overlap 2157101 2157100 AGGCGGCAGAAAAAC TGGCTCAGGCGCAGGCT GATTTA AGCC-GCTGCTGAGCCA TTTTCTTTTAACGAA TERM 2652 2157139 - 2157101 - T 75 -9.6 -3.49687 | gap 1, opp_overlap 2157101, overlap 2157100 AGGCGGCAGAAAAAC TGGCTCAGGCGCAGGCT GATTTA AGCC-GCTGCTGAGCCA TTTTCTTTTAACGAA yegD 2158499 - 2157147 - | putative chaperone TERM 2653 2157658 - 2157671 + g 73 -3.8 -4.81249 | CACCACGGCAGGATC GGCA GGGCGA TGCC TTTTTCGGTTTCGCC TERM 2654 2158395 - 2158413 + g 72 -5.2 -4.4874 | opp_overlap 2158396, overlap 2158396 CGCGCAAAGCATTGA AGGCAGCA GCG TGCTGTCG TTTTCCATTTTTAGC TERM 2655 2158687 - 2158706 + G 73 -11.4 -2.62263 | TGGATGTTGGGATTT CTCGCCGC CCGT GCGGTGAG TGGTGTGGAAACGGT alkA 2158633 - 2159481 + | 3-methyl-adenine DNA glycosylase II TERM 2656 2161981 - 2162016 + F 93 -12 -3.75153 | gap 1, overlap 2161980 2161984 2161985 2161986 AGCGGAATATTCCAT CGCG-TTCCGAAAGCGG GTT TCGCTTTCGGAAATGTG TTTGCGTTCCGCACG TERM 2657 2161984 - 2162012 + F 85 -12.5 -3.30106 | overlap 2161980 2161981 2161985 2161986 GGAATATTCCATCGC GTTCCGAAAGCGG GTT TCGCTTTCGGAAA TGTGTTTGCGTTCCG TERM 2658 2161985 - 2162011 + F 90 -16 -2.57581 | overlap 2161980 2161984 2161981 2161986 GAATATTCCATCGCG TTCCGAAAGCGG GTT TCGCTTTCGGAA ATGTGTTTGCGTTCC TERM 2659 2162345 - 2162331 - f 93 -10 -4.67353 | GCAGCGACTCAAAAA GCAACC GTG GGTTGC GATGGCGCAGCAGAT TERM 2660 2162462 - 2162437 - f 73 -4.6 -4.81551 | overlap 2162438 TACCCATATCAAAAA TGCCCTGAGA GGATCG TCTCCGGGCG TCAGCAGGACAACCA TERM 2661 2162873 - 2162848 - g 71 -3.3 -4.74518 | gap 1, opp_overlap 2162856, overlap 2162849 2162863 AACGACGAAAACAAA CTCAGGTC-GCT AAT ATCTGACCTGAA ACAACATGGTCAGAT TERM 2662 2163853 - 2163881 + G 71 -3.2 -4.82901 | AGACGACGCTGCGAC GTTCTGTTCGC-CA TGA TGCGCGA-CGGGAC TTTTTATACCCCGCA SFV_2133 2162710 - 2163906 + | ISSfl2 ORF TERM 2663 2164385 - 2164363 - g 71 -10.6 -2.93853 | opp_overlap 2164363 2164364, overlap 2164362 TGTTGGTAACCAAAT CTCCAGTGGT GAT ACCACCGGAA TTGTGGTGATCACCC SFV_2134 2163908 - 2164960 + | multidrug efflux system subunit MdtA TERM 2664 2164957 - 2164946 - f 80 -5.8 -5.09173 | opp_overlap 2164956 GAATACGCGAAAAAA GGAG CACG CTCC TGATGCAGGTGTTAC TERM 2665 2164985 - 2165004 + G 72 -6.4 -4.33819 | opp_overlap 2164987 TACCCCCGAGCAGCA CAGGCG GCCCGTCG CGCCTG TTTATTATGCGTCCT TERM 2666 2166266 - 2166244 - g 73 -4.1 -4.7657 | gap 1 GAAAAAGGCGAAAAA CCGTTG-GCG GCGG CGCTCAAGGG CGCAGGTGAAATCGG yegN 2164960 - 2167518 + | hypothetical protein SFV_2136 2167588 - 2168082 + | hypothetical protein TERM 2667 2168566 - 2168600 + G 73 -11.4 -2.65815 | opp_overlap 2168588 2168589, overlap 2168557 TTCGCCTCGACGCAG CTGGCTCCGACGATTT CGC AAATCGACGGTGTCGG TGATGTCGATGTCGG TERM 2668 2168814 - 2168792 - g 78 -7.6 -4.30416 | opp_overlap 2168794 2168805, overlap 2168794 2168805 2168808 ACGATGAACTGAAAA CCGCCGCTGA ATA TCAGCCGCTG ATTATTCACTACAAC TERM 2669 2170561 - 2170600 + G 81 -9.3 -4.07568 | gap 2 ACCCAGCTTGGTGTG CCTTCGACGGTGCGCGGCA GTTT TGCCG-GCACGG-CGCAGG TTTTCCAGGAGACGA TERM 2670 2170846 - 2170830 - g 77 -3 -5.07486 | gap 1, opp_overlap 2170830 2170832, overlap 2170832 CATCGTGAAGAAAAA CG-CCAT TATG ATGGTCG ATTTTGCGCTTGAAG yegO 2168083 - 2171148 + | multidrug efflux system subunit MdtC yegB 2171255 - 2172565 + | multidrug ABC transporter TERM 2671 2172885 - 2172841 - g 78 -8.4 -4.20025 | gap 1, opp_overlap 2172847, overlap 2172837 AATTCGGAAGATAAA CCCGGCCCGGGTATGCC-GCC GCAC GGCTGGCGTACCCAGTTCTGG GTGGTCGATCAAAAC TERM 2672 2172847 - 2172879 + G 80 -12 -3.37975 | gap 1, opp_overlap 2172837 2172841 GAAGATAAACCCGGC CCGGGTATGCC-GCC GCAC GGCTGGCGTACCCAG TTCTGGGTGGTCGAT baeS 2172562 - 2173965 + | signal transduction histidine-protein kinase BaeS TERM 2673 2174396 - 2174407 + G 70 -5.8 -4.15106 | AAGCCCGTTGATTAT CGAC GAAG GTCG TTTTCAGGCTTCATG TERM 2674 2174614 - 2174582 - g 75 -4.7 -4.81551 | CAGCCACATTAAAAA TCTGCGCCGCAAGCT GGA ATCTCTCGACGCCGA ACAGTCATTTATCCG baeR 2173962 - 2174684 + | DNA-binding transcriptional regulator BaeR TERM 2675 2174841 - 2174824 - f 71 -7.7 -3.84514 | opp_overlap 2174824, overlap 2174819 ACTTTAATCAGTAAA CAGCACC TTTA GATGCTG TTTTCGATAAGCAAT SFV_2141 2174836 - 2175207 + | hypothetical protein TERM 2676 2176100 - 2176086 - g 73 -9.2 -3.69395 | overlap 2176083 TTTATGATCGAAGAA GCCCAG CGT CCGGGC GAGTATATGACCGCG TERM 2677 2176584 - 2176574 - g 78 -8.2 -4.24948 | TGAGCACATGGAAAA CGCC AAA GGCG AAGCTATGCCGGTCG yegQ 2175213 - 2176715 + | hypothetical protein TERM 2678 2176849 - 2176880 + T 100 -8.1 -5.28176 | overlap 2176852 CCAGGAACCACCTCC TTAGCCTGTGTAA TCTCCC TTACACGGGCTTA TTTTTTGTACATAAG TERM 2679 2176852 - 2176877 + T 93 -9.8 -4.73105 | overlap 2176849 GGAACCACCTCCTTA GCCTGTGTAA TCTCCC TTACACGGGC TTATTTTTTGTACAT SFV_2143 2177434 - 2177057 - | hypothetical protein TERM 2680 2178264 - 2178250 - g 71 -2.7 -4.77757 | opp_overlap 2178254 CCGGAAAAATTAAAA GCCGC GCTGG GTGGC GTCTCTTACATCATT SFV_2144 2177782 - 2178681 + | lipid kinase TERM 2681 2178756 - 2178712 - T 86 -13 -3.39595 | gap 1, opp_overlap 2178729 TTGAACCAGGGAGAA TCCGTAATGCCGGATGCGGTG TAAA CACCTTATCCGGCA-TACAGA ACAATACTACACCGT gatR 2179536 - 2178763 - | galactitol utilization operon repressor TERM 2682 2179385 - 2179398 + g 74 -2.3 -5.06414 | opp_overlap 2179384, overlap 2179386 GCACCGCCATGAAAG CGCGT AACC ACGCC TTTTTGTTCGAGAAA TERM 2683 2179611 - 2179638 + r 76 -9.1 -3.74693 | gap 1, opp_overlap 2179610 2179612 2179613, overlap 2179612 ATCTGTTTGCACAAT AC-CGGGCCAGC ATCAC GCTGGCCCGCGG TTTCATGGAATGAGC TERM 2684 2179612 - 2179637 + r 79 -12.6 -2.84602 | gap 1, opp_overlap 2179610 2179612 2179613, overlap 2179611 TCTGTTTGCACAATA C-CGGGCCAGC ATCAC GCTGGCCCGCG GTTTCATGGAATGAG TERM 2685 2179636 - 2179612 - R 83 -13.5 -3.21276 | opp_overlap 2179612 2179611, overlap 2179610 2179613 TCTGTTTGCACAATA CCGGGCCAGCA TCA CGCTGGCCCGC GGTTTCATGGAATGA TERM 2686 2179635 - 2179613 - R 95 -17 -2.52623 | opp_overlap 2179612 2179611, overlap 2179612 2179610 CTGTTTGCACAATAC CGGGCCAGCA TCA CGCTGGCCCG CGGTTTCATGGAATG gatC 2182085 - 2180730 - | PTS system galactitol-specific enzyme IIC gatB 2182373 - 2182089 - | galactitol-specific PTS system component IIB gatZ 2184128 - 2182866 - | putative tagatose 6-phosphate kinase 1 gatY 2185011 - 2184157 - | tagatose-bisphosphate aldolase TERM 2687 2185156 - 2185135 - R 100 -13.7 -5.58209 | TGAAAGGCAAAAAAA CGGCCTCCC GATA GGGAAGCCG TAGCAAAGTGCGCGT SFV_2152 2186371 - 2185319 - | fructose-bisphosphate aldolase TERM 2688 2186472 - 2186484 + H 76 -4.1 -5.08011 | overlap 2186470 ACGGGCGAGTTTTTC CATCT TTT GGATG TTTTTTCAGCGTTTT TERM 2689 2186651 - 2186635 - g 85 -8.7 -4.56729 | opp_overlap 2186635 2186638 ATTAAAAGATGAAAA CAACAGC AAA GCTGTCG TTCATGATGTTTGTT TERM 2690 2187374 - 2187356 - g 72 -4.5 -4.7254 | opp_overlap 2187365, overlap 2187342 AGTTGGCATGAAAAA CGCCACC GGCTG GATGACG CTCGGCCAGTTCTCT TERM 2691 2187406 - 2187416 + G 72 -4.6 -4.65895 | overlap 2187415 AAATCTTCTTTATGC TGGC ATT GCCG TTTTTCACTAAACGC TERM 2692 2187645 - 2187612 - g 87 -4.5 -5.252 | overlap 2187614 TATGTCGATAAAAAA GCCCCCGTGCA TATGCGTACCGC TGCGCAGGGGC TGATCACGCTCTGCT TERM 2693 2187781 - 2187810 + G 80 -11.5 -3.27622 | overlap 2187779 GGATGTGGACTTTTG GCGCGGTGATGAT TGCC ATTATCGCCGTGC TGTTCATGATTTTTT yegT 2186628 - 2187905 + | putative nucleoside permease protein TERM 2694 2188218 - 2188206 - f 74 -3.3 -5.06414 | overlap 2188210 CGCCTTTAACAAAAA CGTAC TAG GTCCG ACCTCGAAGATTGCG TERM 2695 2188764 - 2188746 - f 70 -9.6 -2.98823 | opp_overlap 2188730, overlap 2188748 TGGCGGCGACACAGA CACCATAG GTG CTATGGCG ACGGCGATTTGCGGC TERM 2696 2188969 - 2188999 + G 80 -11.9 -3.33162 | gap 1, overlap 2188963 CGGTGATGGTCGTCG GCG-CGGCGGTCAT TGAC GTGATCGCCGACGC TTATGCCCTCCCCTG SFV_2155 2188902 - 2189867 + | putative kinase yegW 2190587 - 2189841 - | putative transcriptional regulator TERM 2697 2189902 - 2189950 + g 93 -11 -4.39568 | opp_overlap 2189902, overlap 2189904 ATGCTGTACTCAATA GGCCGTTGCTGTTGGTCAAGCG CCACT TGCTTGATCACCAGCACCGGTA TTTTGCTATCTAACT TERM 2698 2189904 - 2189948 + g 100 -15.8 -3.79993 | opp_overlap 2189902, overlap 2189902 GCTGTACTCAATAGG CCGTTGCTGTTGGTCAAGCG CCACT TGCTTGATCACCAGCACCGG TATTTTGCTATCTAA TERM 2699 2190455 - 2190486 + g 83 -5.1 -5.12707 | gap 1, opp_overlap 2190455 2190454 CACCGGGCAAAATAT TGCCATGCTCCAGC ACCCC GCTGC-GCACGGCA TTTTTTACCGTTTCG TERM 2700 2190536 - 2190518 - G 78 -8.8 -4.25401 | CAAACTTAATATAAA GCGGCG TGTTATC CGCCGC TAAAATACGCTCGTT yegX 2191456 - 2190635 - | hypothetical protein thiD 2192321 - 2191521 - | phosphomethylpyrimidine kinase TERM 2701 2191987 - 2191973 - G 73 -9.2 -3.66178 | opp_overlap 2191974 2191976, overlap 2191958 CCGCCGAAGGTGAAA GCAGCG GGT CGCCGC TTTTTGCCAGCATAA TERM 2702 2191976 - 2191987 + g 77 -7.2 -4.57569 | opp_overlap 2191958 2191973, overlap 2191974 CCGAAGGTGAAAGCA GCGG GTCG CCGC TTTTTGCCAGCATAA thiM 2193106 - 2192318 - | hydroxyethylthiazole kinase yohL 2193601 - 2193329 - | hypothetical protein TERM 2703 2193861 - 2193829 - g 70 -4 -4.66609 | overlap 2193832 CAGGGCACTCAAAAA CGATGATGGCGGCG TTTAT CATCGCCATCAAAG GCACCATTAAACAGG yohM 2193723 - 2194571 + | nickel/cobalt efflux protein RcnA TERM 2704 2194654 - 2194672 + F 73 -7.4 -4.08919 | CTCTCTGCTCGCTAA GGATGCTT TTA GGGCATCC TTTCATTTACACTTT SFV_2162 2194790 - 2195128 + | hypothetical protein TERM 2705 2195154 - 2195134 - T 100 -11.1 -5.42259 | overlap 2195135 TCATCGCTAAAAAAA GCCCCCTCA TCA TGAGGGGGA AATGCAGACACCTTG TERM 2706 2195153 - 2195135 - T 100 -14.6 -3.84633 | overlap 2195134 CATCGCTAAAAAAAG CCCCCTCA TCA TGAGGGGG AAATGCAGACACCTT yehA 2196243 - 2195428 - | putative type-1 fimbrial protein TERM 2707 2195956 - 2195968 + g 79 -4.1 -5.14163 | GCTCTGATTATTTGA CAACG TGA TGTTG TTTTTATTGGTCCAT yehB 2198739 - 2196259 - | putative outer membrane protein yehC 2199318 - 2198755 - | putative chaperone insB 2199880 - 2199377 - | IS1 ORF2 SFV_2167 2199955 - 2200188 + | putative IS1 encoded protein TERM 2708 2200249 - 2200230 - T 100 -10 -4.98531 | opp_overlap 2200229 CTCTTAAATTAAAAA GCCGCCAT GGGG ATAGCGGC CATGTTTATTACCTG yehD 2200829 - 2200287 - | putative fimbrial-like protein TERM 2709 2201089 - 2201060 - R 100 -15.3 -5.5353 | opp_overlap 2201060 2201067 GATATCAATAAAAAA GACGAAATCATTT ATAT AAATGATTTCGTC TTTCTAAATGCAATT TERM 2710 2201060 - 2201089 + r 100 -15.3 -3.92641 | opp_overlap 2201060, overlap 2201067 GATATCAATAAAAAA GACGAAATCATTT ATAT AAATGATTTCGTC TTTCTAAATGCAATT TERM 2711 2201635 - 2201603 - R 80 -6.3 -4.85782 | TGCGGCAAAAACAAA TACACCGCATCAATA TAA CATCTCTGCGGTGTA TGAAGAATAACCAGA mrp 2202774 - 2201665 - | putative ATPase TERM 2712 2203273 - 2203256 - g 93 -8.5 -4.86731 | TCGCCTGAAAGAAAA CGGTTTT ATTA AAAACCG CACCATCTCTCAGCT TERM 2713 2203318 - 2203305 - g 70 -3.8 -4.60487 | opp_overlap 2203310 TACGATCCGGAAAAA GGCA TGTTCC TGCC GGACCGTTTTGTGAA TERM 2714 2203947 - 2203935 - g 76 -9.1 -3.73775 | opp_overlap 2203931 GGCACCTTTATTAAA GCCAG CAC CTGGC TGAATCATTTTGACG metG 2202906 - 2204939 + | methionyl-tRNA synthetase TERM 2715 2204951 - 2204970 + F 100 -10.7 -5.01553 | ATAATCCCCCTTCAA GGCGCTG CATCGA CAGCGCC TTTTCTTTATAAATT SFV_2172 2205512 - 2205637 + | IS600 ORF1 SFV_2173 2205778 - 2206491 + | IS600 ORF2 TERM 2716 2207668 - 2207637 - f 100 -13.7 -3.84961 | GATCGAATGACGAAA GCCTGCGCTGCGT TCCCAC ACGCAGCACTGGC AGCACTGGCGGAACT TERM 2717 2208257 - 2208247 - f 72 -5.4 -4.40993 | opp_overlap 2208241, overlap 2208241 GAGAAAGCAGTAAAA GCAT GGA ATGC CCTTACTCTATCTCC SFV_2175 2208295 - 2210139 + | putative molybdate metabolism regulator TERM 2718 2211178 - 2211144 - gT 71 -2.1 -4.90217 | gap 1, overlap 2211145 TAAATACAGTAAAAA CTTCCCCCA-TGCGAC ACTC GCCGCACTGGCAGAAC TGCTGGCGTTAAAAG TERM 2719 2211250 - 2211237 - gT 81 -4.5 -5.10767 | CATCGAAGACAAAAA GCTGC CTGC ACAGC AAAAAGCTCGAGATG insB 2212278 - 2211775 - | IS1 ORF2 SFV_2176 2210149 - 2211840 + | hypothetical protein SFV_2178 2212353 - 2212541 + | putative IS1 encoded protein TERM 2720 2212682 - 2212656 - g 76 -8 -4.29073 | GAAGAATCGAAGAAA TTCAGCGCCAAT CTG AACGGCACTGAA ATTGCCATTACCTAT yehR 2212563 - 2213024 + | hypothetical protein yehS 2213592 - 2213065 - | hypothetical protein yehT 2214301 - 2213582 - | putative two-component response-regulatory protein YehT yehU 2215944 - 2214298 - | putative 2-component sensor protein TERM 2721 2214946 - 2214964 + g 70 -5.8 -4.18488 | AAGCAGTTGCGCAAT CCCCTCGC CCA GCGTGCGG TTTATTGAACTGAAT TERM 2722 2216173 - 2216204 + H 100 -13.9 -4.4017 | opp_overlap 2216176 CCAGTGGCTGTGTAA GAATCCGGAAACG CTCACT TGTTTCCGGATTC TTTTATGCACATTGG TERM 2723 2216201 - 2216176 - H 72 -9.1 -3.61398 | opp_overlap 2216173 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTCTTTTATGCACAT SFV_2183 2216191 - 2217537 + | IS4 orf TERM 2724 2217548 - 2217519 - f 89 -9.3 -4.59109 | overlap 2217521 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACCCTATAGATGCA TERM 2725 2217546 - 2217521 - f 100 -16.3 -3.90762 | overlap 2217519 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACCCTATAGATG TERM 2726 2217744 - 2217728 - f 72 -5.1 -4.62302 | overlap 2217730 CAACATTTTTAAAAA TCGACGA AGA TCGTCCA GGAGCGCCGTTTTTC SFV_2184 2217935 - 2218183 + | putative DNA damage-inducible protein TERM 2727 2218252 - 2218284 + T 100 -8.4 -5.63236 | gap 1, opp_overlap 2218198 2218252 AAGTTTACCAGCCAA CCGCAG-CACGTCCT GCAT ACGTCGTGTCTGCGG TTTTTCTTTTTCGCT SFV_2185 2218568 - 2218299 - | hypothetical protein SFV_2186 2218637 - 2219293 + | unknown protein encoded within prophage TERM 2728 2219333 - 2219301 - f 86 -13.6 -3.16564 | gap 1, opp_overlap 2219301 AAAAATAGCATCCAA CCGCAGCACGTTCTT GCTT AAGA-CGTGCTACGG TTTCCTTTACGATTT TERM 2729 2219301 - 2219333 + F 89 -11.4 -4.08919 | gap 1, opp_overlap 2219301 AAAAATAGCATCCAA CCGCAGCACGTTCTT GCTT AAGA-CGTGCTACGG TTTCCTTTACGATTT ipaH_5 2219609 - 2221252 + | invasion plasmid antigen TERM 2730 2221293 - 2221318 + T 72 -10.3 -2.80784 | opp_overlap 2221294 2221295, overlap 2221290 ACTGACTCCGGAAAA ACGGAGGCCCG CCCC CGGGCCTCCCC TGATTCATCCGTTTC TERM 2731 2221317 - 2221294 - T 100 -13.8 -4.58395 | opp_overlap 2221293 2221290, overlap 2221295 CTGACTCCGGAAAAA CGGAGGCCCG CCCC CGGGCCTCCC CTGATTCATCCGTTT TERM 2732 2221316 - 2221295 - T 100 -17.3 -3.34716 | opp_overlap 2221293 2221290, overlap 2221294 TGACTCCGGAAAAAC GGAGGCCCG CCCC CGGGCCTCC CCTGATTCATCCGTT SFV_2188 2222055 - 2221432 - | hypothetical protein SFV_2189 2223421 - 2222006 - | putative tail fiber protein TERM 2733 2223463 - 2223445 - R 73 -7.4 -4.13995 | overlap 2223448 TCGCGATAAATTAAA TCAGGAAG AAC CTTCCGGA GAGGCGGGCCATTCA SFV_2190 2223986 - 2223585 - | putative tail fiber assembly protein SFV_2191 2224402 - 2223989 - | putative IS1 encoded protein insB 2224638 - 2225141 + | IS1 ORF2 SFV_2193 2225379 - 2225849 + | putative fimbrial-like protein insB 2226346 - 2225843 - | IS1 ORF2 SFV_2196 2227599 - 2226574 - | putative bacteriophage protein SFV_2195 2227466 - 2227960 + | hypothetical protein SFV_2197 2228698 - 2227985 - | IS600 ORF2 SFV_2198 2228964 - 2228839 - | IS600 ORF1 TERM 2734 2229335 - 2229346 + G 72 -4.4 -4.65747 | TCCCCTCACCCGTGA CGAA TTTA TTCG TTTTATTGAGGCTTG TERM 2735 2229657 - 2229670 + G 95 -6.7 -5.26119 | TATGGGAGAAGTACT GTGCA TAAA TGCAC TTTTGTTTTTAGCCC SFV_2199 2229207 - 2230004 + | putative integrase SFV_2201 2230332 - 2230658 + | IS629 ORF1 TERM 2736 2230978 - 2230966 - g 70 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SFV_2202 2230658 - 2231545 + | IS629 ORF2 SFV_2203 2232103 - 2232210 + | hypothetical protein yehW 2232922 - 2232191 - | putative transport system permease protein TERM 2737 2232614 - 2232590 - G 72 -8.5 -3.83026 | TGGTTGCAGACCAAA GCCGATCACCG GAA CGGCAATCGCC AGCACTGCGACAGGC yehX 2233853 - 2232927 - | putative ATP-binding component of a transport system yehY 2235003 - 2233846 - | putative transport system permease protein TERM 2738 2234394 - 2234370 - G 90 -4.9 -5.39721 | TGAGCAGAGAAAAAA TTGCCCCCTGC CGC GCAGTGGAAAA GTAGCACCAGATGCC TERM 2739 2234830 - 2234816 - G 70 -5.6 -4.37886 | overlap 2234792 2234818 TTAGCGGGGACAAAA CAGGCT GTC AGCCAG GCGCAACCAACGCCC TERM 2740 2234942 - 2234932 - G 74 -8.2 -3.97368 | overlap 2234933 CGCGTAACTGATAAA CGGC AGC GCCG CTGCGATTGCCGTCA yehZ 2235927 - 2235010 - | putative transport system permease protein TERM 2741 2235087 - 2235104 + g 70 -3.5 -4.65895 | gap 1, overlap 2235083 CCACTGCAATGCTGG CATT-CAG TTG CTGCAATG TTTTTGCATCGAGGC TERM 2742 2235585 - 2235598 + g 73 -3.8 -4.84529 | overlap 2235577 AGATTAACTTGTTGT GCTC CGCATC GAGC TTTTTGACTTTCTCG TERM 2743 2236167 - 2236149 - R 93 -12.4 -3.71607 | opp_overlap 2236149 TGAACATCAGGCAAA GGGCGCAA ACG TCGCGCCC TTACTAAAGCATTAC TERM 2744 2236149 - 2236167 + r 74 -10.2 -3.15579 | opp_overlap 2236149 TGAACATCAGGCAAA GGGCGCAA ACG TCGCGCCC TTACTAAAGCATTAC bglX 2238446 - 2236179 - | beta-D-glucoside glucohydrolase TERM 2745 2236327 - 2236345 + g 75 -6.6 -4.37658 | CTGACAGTCTGAGTT TCGCCCGG TTT CAGGGTGA TTTTCTCAAAGCCTT TERM 2746 2239405 - 2239418 + G 70 -6.7 -4.01703 | opp_overlap 2239404, overlap 2239404 CCGCACGTTATAACG CCGAT CCGG ATCGG TTATTTGAATCTTCT dld 2238672 - 2240387 + | D-lactate dehydrogenase TERM 2747 2240419 - 2240391 - T 84 -7.6 -4.74801 | gap 2, opp_overlap 2240392, overlap 2240392 2240394 GAAGTGGAGTAAAAA TTACGGATGGCAGA GTA TC-GCCATCCG-AA TTCACTTAATCGTTC TERM 2748 2240419 - 2240392 - T 70 -9.2 -3.44158 | gap 1, opp_overlap 2240392, overlap 2240391 2240394 AAGTGGAGTAAAAAT TACGGATGGCAGA GTA TC-GCCATCCGAA TTCACTTAATCGTTC TERM 2749 2240417 - 2240394 - T 79 -11.8 -3.28472 | gap 1, opp_overlap 2240392, overlap 2240391 2240392 GTGGAGTAAAAATTA CGGATGGCAGA GTA TC-GCCATCCG AATTCACTTAATCGT pbpG 2241357 - 2240425 - | D-alanyl-D-alanine endopeptidase TERM 2750 2240453 - 2240469 + g 100 -10.8 -5.8096 | overlap 2240437 GCCGTCTGCCCCGCC GCCGCC ATTTG GGCGGC TTTTTGTTTTTTATA TERM 2751 2240970 - 2240980 + g 81 -8.2 -4.3739 | opp_overlap 2240955, overlap 2240959 GGTGCGCAAGGCTTG CCGC CGC GCGG TTTTCTGAAGACATC TERM 2752 2241518 - 2241483 - R 86 -11.2 -3.75015 | overlap 2241484 AGAATCGTGAGTAAA TGCTGCATTGCTGACA TTTA CGCCAGCAATGCAACG TCAAAGAACTTTCTA TERM 2753 2241517 - 2241484 - R 87 -14.7 -2.84527 | overlap 2241483 GAATCGTGAGTAAAT GCTGCATTGCTGACA TTTA CGCCAGCAATGCAAC GTCAAAGAACTTTCT yohC 2242118 - 2241531 - | hypothetical protein yohD 2242288 - 2242866 + | hypothetical protein TERM 2754 2242862 - 2242848 - T 80 -5.6 -5.06414 | GCGCGGGAAGAAAAA GCCGGA TAA TCAGGC GTAAAGCAGTTGCCA yohG 2245329 - 2243803 - | multidrug resistance outer membrane protein MdtQ TERM 2755 2243889 - 2243875 - G 73 -9.2 -3.61398 | CTGCCCTTGCAATAA CAGGCC ATT GGCCCG CTCACGCAGCGCCGG TERM 2756 2244292 - 2244277 - G 70 -4.6 -4.46926 | GATGTCAGGATAAAA TGCCGC TTTT GCCGCA TCAATAGTGCTTAAC TERM 2757 2245691 - 2245652 - R 71 -10.6 -2.71364 | overlap 2245640 TCACTGGCGCAAGGA GCACGCAGGGGGCGAC CAATCGCC GCCGCCCCCTGCCCCC CCGGGCTCTGGCGAA yohI 2246864 - 2245917 - | tRNA-dihydrouridine synthase C TERM 2758 2246905 - 2246884 - H 100 -8.1 -5.42259 | gap 1, opp_overlap 2246887, overlap 2246885 2246887 TCACCCGCAAAAAAA TGAGGCGCTA TGT TAGCGCCT-A TGGTCAGCGGATTAA TERM 2759 2246905 - 2246885 - H 80 -9.7 -3.84633 | opp_overlap 2246887, overlap 2246884 2246887 CACCCGCAAAAAAAT GAGGCGCTA TGT TAGCGCCTA TGGTCAGCGGATTAA TERM 2760 2246903 - 2246887 - H 88 -12.3 -3.49966 | opp_overlap 2246887, overlap 2246884 2246885 CCCGCAAAAAAATGA GGCGCTA TGT TAGCGCC TATGGTCAGCGGATT TERM 2761 2246887 - 2246903 + H 79 -12.3 -2.78715 | opp_overlap 2246884 2246885 2246887 CCCGCAAAAAAATGA GGCGCTA TGT TAGCGCC TATGGTCAGCGGATT TERM 2762 2246927 - 2246966 + H 73 -9.5 -3.32993 | gap 2, opp_overlap 2246932, overlap 2246932 2246934 GCGGATTAAAGGTCT GCA-A-AGAGGGATTGCTG CAAA CTGCAATCCCTCTCTATGC TTGATGTATGCCTGA TERM 2763 2246932 - 2246959 + H 85 -14.2 -3.0281 | opp_overlap 2246932, overlap 2246927 2246934 TTAAAGGTCTGCAAA GAGGGATTGCTG CAAA CTGCAATCCCTC TCTATGCTTGATGTA TERM 2764 2246959 - 2246932 - H 93 -14.2 -3.56594 | opp_overlap 2246927 2246932 2246934 TTAAAGGTCTGCAAA GAGGGATTGCTG CAAA CTGCAATCCCTC TCTATGCTTGATGTA TERM 2765 2246934 - 2246957 + H 75 -11 -3.06361 | opp_overlap 2246932, overlap 2246932 2246927 AAAGGTCTGCAAAGA GGGATTGCTG CAAA CTGCAATCCC TCTCTATGCTTGATG TERM 2766 2247159 - 2247178 + G 90 -9.3 -4.4959 | TTTCGTCCTGATTTA TGCCTGC CTGTAT GCAGGCA TTTTCATTGCTTCCC yohJ 2247103 - 2247501 + | hypothetical protein yohK 2247498 - 2248193 + | hypothetical protein cdd 2248323 - 2249207 + | cytidine deaminase TERM 2767 2249275 - 2249291 + F 89 -10.9 -4.15044 | TGGTGTCGAAATTCC CGGCAAA CAG TTTGCCG TTTCTTGCGCAAAAC TERM 2768 2249948 - 2249958 + G 79 -4.6 -5.00884 | opp_overlap 2249948 CTTTATATTTTTAAA CGTG AAC CGCG TTTTTTAGGGCCGCT sanA 2249357 - 2250076 + | hypothetical protein TERM 2769 2250209 - 2250192 - g 75 -5.5 -4.60924 | opp_overlap 2250194, overlap 2250194 TAAACGGGTTAAAAA TGCACCG GAAC CGGTGTA TGTCTGGCGAGCAAA SFV_2220 2250079 - 2250318 + | hypothetical protein TERM 2770 2250810 - 2250820 + G 85 -6.8 -4.76123 | overlap 2250769 CCCATTGATATCGGC CGCT TAC AGCG TTTTGTTACTGATTT TERM 2771 2251412 - 2251428 + G 85 -11.5 -3.68827 | AAAAGAGTTTGCCAG CGCCCGG GAG CTGGGCG TTTCGATCATCGATG SFV_2221 2250513 - 2251751 + | putative oxidoreductase TERM 2772 2252377 - 2252366 - T 72 -5.8 -4.54821 | opp_overlap 2252366, overlap 2252349 ATCTTAATCAGAAAA TCGG TATG CCGA TCGTTAACGGTAAAT mglC 2254004 - 2252994 - | beta-methylgalactoside transporter inner membrane component TERM 2773 2254029 - 2254066 + r 91 -8.5 -4.96848 | opp_overlap 2254033 2254035 CTAATCTTAAAGGTG CAAAGACGCAAGACGCA GAAT TTCGTTTTGCGTTGTTG TTTTTGTATCGACAA mglA 2255504 - 2254020 - | galactose/methyl galaxtoside transporter ATP-binding protein TERM 2774 2254900 - 2254915 + g 78 -7.6 -4.38154 | opp_overlap 2254899 2254900 ACTTCATCACATAAC TGGAAG ATTT CTTCCA TTTTATGCGAGATAT TERM 2775 2255592 - 2255570 - R 100 -14.9 -3.88232 | opp_overlap 2255583, overlap 2255583 TTGGCCATACAATAA GGGCGCAGT AAACG ACTGCGCCC AATCAGTCTTATTTC mglB 2256599 - 2255601 - | galactose-binding transport protein; receptor for galactose taxis TERM 2776 2255702 - 2255718 + g 70 -4.3 -4.57569 | TGCCATCAGCCGCAC CTTTGCC ATC GGCCAGG TTTTTCGCCAGATCA galS 2257919 - 2256879 - | DNA-binding transcriptional regulator GalS yeiB 2259137 - 2258061 - | hypothetical protein TERM 2777 2259040 - 2259070 + g 71 -9.1 -3.44848 | gap 1, opp_overlap 2259043 2259044, overlap 2259038 2259044 CAGGCGGGATTGAGA TAAGCCGCCTTTGG TAGC CCAAAGGCG-CTGA TGTTTAATAGCAGGA TERM 2778 2259067 - 2259043 - G 78 -10.8 -3.51924 | gap 1, opp_overlap 2259040 2259038 2259044, overlap 2259044 GCGGGATTGAGATAA GCCGCCTTTGG TAGC CCAAAGGCG-C TGATGTTTAATAGCA TERM 2779 2259067 - 2259044 - G 70 -11 -2.7094 | opp_overlap 2259044 2259040 2259038, overlap 2259043 CGGGATTGAGATAAG CCGCCTTTGG TAGC CCAAAGGCGC TGATGTTTAATAGCA TERM 2780 2259044 - 2259067 + g 71 -11 -2.87501 | opp_overlap 2259043 2259044, overlap 2259040 2259038 CGGGATTGAGATAAG CCGCCTTTGG TAGC CCAAAGGCGC TGATGTTTAATAGCA folE 2259822 - 2259154 - | GTP cyclohydrolase I TERM 2781 2260369 - 2260382 + G 70 -3.7 -4.70583 | ATGGCTACGATTTAG GCCAG GGCG CAGGC TTTTATCTTAATGCC yeiG 2260080 - 2260916 + | putative esterase TERM 2782 2260923 - 2260938 + T 76 -11.8 -2.56271 | opp_overlap 2260919 2260920, overlap 2260922 CTGAAGTGAAAGTCC GCCCGG TTCG CCGGGC ATCTTCTCATCAGAA cirA 2262939 - 2260948 - | colicin I receptor TERM 2783 2261128 - 2261142 + g 78 -9.2 -3.87373 | CGGTGTTTTAGCCGT CGCGCT GTC GGCGCG TTTCTGCCCGGTATA TERM 2784 2261309 - 2261330 + g 72 -5.9 -4.30448 | overlap 2261322 TAGTTGATCGACAGT TTCCATTCA TCGT TGAACGGAA TTTTCAGTTCGGTTT TERM 2785 2263209 - 2263190 - R 100 -13.6 -4.75776 | AATGGAATTGAAAAA GCCCTCTC GGTT GAGAGGGC TTAGCAAGGAAGGGA lysP 2264631 - 2263231 - | lysine transporter TERM 2786 2264128 - 2264093 - G 70 -6.8 -4.08945 | gap 1, opp_overlap 2264103 2264104, overlap 2264104 ATCATCGCCGCAAAA CCACCAG-CAAACGGCG CTT CGCCGATTGTCCAGTTG CTCCAGCCCGCAGGC TERM 2787 2264116 - 2264104 - G 84 -10.5 -3.83705 | opp_overlap 2264103 2264104, overlap 2264093 AAAACCACCAGCAAA CGGCG CTT CGCCG ATTGTCCAGTTGCTC yeiE 2265712 - 2264906 - | putative DNA-binding transcriptional regulator TERM 2788 2266583 - 2266557 - g 75 -6.6 -4.42386 | CCCGGATGCAGAAAA CGCAGCAGTT ATTTCCA AAATGCTGCG CGTGATGATGCTGGC TERM 2789 2266855 - 2266837 - g 71 -2.2 -5.00884 | AGCGCGCTGAAAAAA GCTGGGGC GAA ACCTCTGC TGATGGCACTGGTAC yeiH 2265886 - 2266935 + | hypothetical protein nfo 2267009 - 2267866 + | endonuclease IV TERM 2790 2268270 - 2268254 - g 82 -9.3 -4.15044 | opp_overlap 2268252 2268259 2268262 TGCTCCTGGAAGAAA CGCGCCG TGC CGGCGTG AATGTCTCCGGCTGC yeiI 2267869 - 2268957 + | hypothetical protein yeiJ 2270263 - 2269013 - | putative transport system permease protein TERM 2791 2269637 - 2269622 - G 78 -9 -3.9122 | overlap 2269609 CAGGCGGGCAAACAA GATCCC GCCA GGGATC GCCATTAACGATGCC TERM 2792 2269758 - 2269794 + g 72 -7.3 -4.19735 | AATAATTCATTGCGA TTCAGACGATCGATAAA GGG TTTGACGATCGCCGGAA TTTCGTTTTGCCCGA TERM 2793 2270075 - 2270089 + g 71 -2.7 -4.82901 | overlap 2270065 CGCCATCACTTTGTG GACGC CAAAA GCGAC TTTTTCTGCGACCCA TERM 2794 2270351 - 2270316 - R 80 -9.6 -3.96148 | opp_overlap 2270318, overlap 2270318 TCTGCCCATCAGAAA TAGCCGGGCCTGCATC TTGC GATACTGTCCCGGCTT GTTATCAACACTTAA TERM 2795 2270318 - 2270349 + r 79 -10 -3.79678 | opp_overlap 2270316 2270318 TGCCCATCAGAAATA GCCGGGCCTGCATC TTGC GATACTGTCCCGGC TTGTTATCAACACTT TERM 2796 2270349 - 2270318 - R 88 -12.2 -3.57406 | opp_overlap 2270318, overlap 2270316 TGCCCATCAGAAATA GCCGGGCCTGCATC TTGC GATACTGTCCCGGC TTGTTATCAACACTT rihB 2271304 - 2270363 - | ribonucleoside hydrolase 2 TERM 2797 2270417 - 2270440 + g 90 -11.8 -3.92324 | opp_overlap 2270417 2270414 TAAGCCCCAGAACCA GTCGGTATCA ATAG TGATGCCGAC TTTGGTATTAGCGGG TERM 2798 2271512 - 2271538 + G 71 -2.1 -5.02074 | opp_overlap 2271512, overlap 2271517 TTGCTTTTCAACGGA TGTTTCAGCCG ATACG CGGCTGTTTCA TTTTTTAGCGCGTGA TERM 2799 2271517 - 2271533 + G 86 -9.4 -4.42765 | opp_overlap 2271512, overlap 2271512 TTTCAACGGATGTTT CAGCCG ATACG CGGCTG TTTCATTTTTTAGCG TERM 2800 2271576 - 2271590 + G 82 -7.8 -4.52589 | GTGCAGGAAGGGCAA CAGCCG TCA TGGCTG TTTTATCTGACGCGA yeiL 2271474 - 2272133 + | DNA-binding transcriptional activator YeiL yeiM 2273454 - 2272204 - | putative transport system permease protein TERM 2801 2272944 - 2272990 + g 83 -10.2 -4.07568 | overlap 2272947 CGGTAAACAACTCGT TGCGATTCACGCGATCGATAAA CGG TTTAACGATCGCCGGGATCTCA TTTTGCCCGAGGAAA TERM 2802 2272947 - 2272987 + g 72 -10.5 -3.08032 | overlap 2272944 TAAACAACTCGTTGC GATTCACGCGATCGATAAA CGG TTTAACGATCGCCGGGATC TCATTTTGCCCGAGG TERM 2803 2273442 - 2273459 + g 70 -5.7 -4.30014 | TCCCCACAACACTTC TCATTAT ATCC ATAATGA TTTTCCCTTCATGCC TERM 2804 2273481 - 2273498 + r 81 -8.3 -4.39287 | opp_overlap 2273481 CTTCATGCCAGTAAA CCCGGCG TCAG CGCCAGG TTTTGGTATGCTTGA TERM 2805 2273498 - 2273481 - R 83 -10.5 -3.74693 | opp_overlap 2273481 CTTCATGCCAGTAAA CCCGGCG TCAG CGCCAGG TTTTGGTATGCTTGA yeiN 2274486 - 2273548 - | hypothetical protein TERM 2806 2273587 - 2273599 + g 73 -9.1 -3.61398 | opp_overlap 2273595, overlap 2273589 TTTGGCAATTTCACT CGCCA GAA TGGCG TTGTTGAACACCAGC TERM 2807 2274153 - 2274163 + g 74 -3.2 -5.00616 | TCGTTGAAGCCACAG TGGT TGC GCCA TTTTTTCCGGCGGCA yeiC 2275415 - 2274474 - | hypothetical protein TERM 2808 2275242 - 2275269 + g 72 -6.2 -4.42619 | opp_overlap 2275222 TACGGCGCTCAGTAG CCAGGCTTTGTT ACCC AGCAACGCCAGG TTTTGTGCAATATTG TERM 2809 2275681 - 2275662 - R 100 -9.3 -5.28683 | AGGAACACTAAAAAA GGGCAGA AAATAA TCTGCCC TTGAGGAAATAACCT TERM 2810 2275793 - 2275833 + r 78 -6.1 -4.66318 | opp_overlap 2275797, overlap 2275794 2275795 TCTCTTTGCGCTCAT CAAATGTTACAGGGCAGGA AAT TTCTGCCCTGTAACACACC TTTTATTACGCTGCT TERM 2811 2275794 - 2275832 + r 73 -9.6 -3.39068 | opp_overlap 2275797, overlap 2275793 2275795 CTCTTTGCGCTCATC AAATGTTACAGGGCAGGA AAT TTCTGCCCTGTAACACAC CTTTTATTACGCTGC TERM 2812 2275795 - 2275831 + r 81 -13.1 -2.62958 | opp_overlap 2275797, overlap 2275794 2275793 TCTTTGCGCTCATCA AATGTTACAGGGCAGGA AAT TTCTGCCCTGTAACACA CCTTTTATTACGCTG TERM 2813 2275829 - 2275797 - R 100 -17.9 -3.72576 | opp_overlap 2275795 2275794 2275793 TTTGCGCTCATCAAA TGTTACAGGGCAGGA AAT TTCTGCCCTGTAACA CACCTTTTATTACGC fruA 2277530 - 2275839 - | fructose-specific PTS system IIBC component fruK 2278485 - 2277547 - | 1-phosphofructokinase fruB 2279615 - 2278485 - | bifunctional fructose-specific PTS IIA/HPr protein yeiO 2279983 - 2281161 + | putative transport insB 2281550 - 2281155 - | IS1 ORF2 insA 2281852 - 2281577 - | IS1 ORF1 SFV_2247 2281733 - 2281930 + | putative IS1 encoded protein TERM 2814 2282170 - 2282151 - g 72 -10 -3.27525 | gap 1, overlap 2282146 2282165 GGGCTGGAAATTGAA GGGGCAGTG CAA CAC-GCCCC GCAACCCGGACGGCA yeiP 2282091 - 2282918 + | elongation factor P TERM 2815 2282958 - 2282939 - f 79 -7.8 -4.42386 | opp_overlap 2282939 GCCGCATGCAGAAAA GGGATAGC TCAG GCTGTCCC TTTTTTAATTTATTA TERM 2816 2282939 - 2282958 + F 100 -10 -5.46129 | opp_overlap 2282939 GCCGCATGCAGAAAA GGGATAGC TCAG GCTGTCCC TTTTTTAATTTATTA yeiQ 2283132 - 2284607 + | putative oxidoreductase TERM 2817 2284618 - 2284656 + F 76 -8.1 -4.03183 | opp_overlap 2284625 TTTAACGATTTCTGC GGTTAAAGCGGATGAAG CTCAC CTTCGTCCGCTCTCCCC TTCTCTTTTCTGCCT TERM 2818 2284649 - 2284625 - f 75 -10 -3.53091 | opp_overlap 2284618 ATTTCTGCGGTTAAA GCGGATGAAG CTCAC CTTCGTCCGC TCTCCCCTTCTCTTT yeiR 2284725 - 2285711 + | hypothetical protein TERM 2819 2285771 - 2285761 - g 73 -4 -4.81734 | opp_overlap 2285761 AAATATGATTAAAAA TTTG CCG CAAA TAGTGTTGTTGAATA TERM 2820 2286011 - 2286001 - g 75 -4.6 -4.86731 | CTGGCTGAAAGAAAA CGCC CCT GGCA GACGACGTATCGTGA SFV_2252 2285714 - 2286463 + | hypothetical protein TERM 2821 2286812 - 2286823 + F 79 -2.2 -5.61596 | AGGTAATTAGTCTCG TGTC GCTT GGCA TTTTTTTATAACGAT TERM 2822 2287351 - 2287364 + G 70 -6.7 -4.08557 | overlap 2287350 GTTTGTCCATGCTTC CACCA GCAG TGGTG TTATTATTTCCAGCA spr 2286875 - 2287441 + | putative outer membrane lipoprotein TERM 2823 2287491 - 2287508 + F 100 -11.3 -5.85244 | opp_overlap 2287491 ACGAGTTAACTGAAA GCACTGC TTAG GCAGTGC TTTTTTGTTTTCATT TERM 2824 2287508 - 2287491 - f 86 -11.3 -3.77219 | opp_overlap 2287491 ACGAGTTAACTGAAA GCACTGC TTAG GCAGTGC TTTTTTGTTTTCATT TERM 2825 2288326 - 2288338 + G 70 -4.1 -4.72272 | CTGGACATGGAACGA TGTGT GGT ACGCA TTTTTACTGGGCGGC TERM 2826 2288904 - 2288922 + G 71 -9.6 -3.50447 | overlap 2288892 2288916 GCGCGCTTATCTATC TTGAGCGT TTT ACGCTCGA TTATCTGAAAATTGA rtn 2287685 - 2289178 + | hypothetical protein TERM 2827 2290155 - 2290136 - g 79 -2.2 -5.25803 | gap 1, overlap 2290138 2290140 AATTTCGATAAAAAA TACATCATC AAA GATGA-GCA AAAGAACGAATCAGC TERM 2828 2290294 - 2290276 - g 100 -13.2 -3.75105 | TGAATGGATGAACAA GGCGTTGT TTT ACAACGCC TGGAGTCGCACGAAC yejA 2289260 - 2291074 + | hypothetical protein TERM 2829 2291920 - 2291965 + G 80 -5.3 -5.02074 | overlap 2291933 TATGTTCCGCAACGC CATGCTGCTGGTGATTGCCGG TTTT CCGGCGACGTTTATCAGCATG TTTTTTACCGGCTCG yejB 2291075 - 2292169 + | putative transport system permease protein TERM 2830 2293034 - 2293054 + G 70 -11.2 -2.73875 | overlap 2293031 TCGGTCTACCGCTCG GTTCACCG TCACT CGGTGAAC TGCTGTTACAAGGGA yejE 2292169 - 2293194 + | putative transport system permease protein yejF 2293196 - 2294785 + | putative ATP-binding component of a transport system yejG 2295133 - 2294789 - | hypothetical protein bcr 2296656 - 2295466 - | bicyclomycin/multidrug efflux system rsuA 2297475 - 2296684 - | 16S rRNA pseudouridylate synthase A yejH 2297529 - 2299289 + | putative ATP-dependent helicase rplY 2299342 - 2299698 + | 50S ribosomal protein L25 TERM 2831 2299714 - 2299743 + T 93 -15.9 -2.90219 | opp_overlap 2299721, overlap 2299721 TTGCTGAATAAGTTG TAAAAAACCCCGC TCCG GCGGGGTTTTTTG TATCTGCAGATTATG TERM 2832 2299736 - 2299721 - T 100 -11.8 -5.06103 | opp_overlap 2299714 2299721 ATAAGTTGTAAAAAA CCCCGC TCCG GCGGGG TTTTTTGTATCTGCA TERM 2833 2299721 - 2299736 + T 100 -11.8 -5.4251 | opp_overlap 2299721, overlap 2299714 ATAAGTTGTAAAAAA CCCCGC TCCG GCGGGG TTTTTTGTATCTGCA yejK 2300844 - 2299837 - | nucleoid-associated protein NdpA TERM 2834 2300986 - 2300975 - H 100 -5.8 -6.04378 | opp_overlap 2300975 2300985 AAAGCAGAAAAAAAA CCGT TGCT ACGG TAATATGTTGCCCTT yejL 2301026 - 2301253 + | hypothetical protein TERM 2835 2301671 - 2301705 + G 81 -6.5 -4.78572 | gap 1, overlap 2301674 AAATGAGATGGCGCG CGACTGGCA-GCTGAT GTTC ATCAGCGTGCCGGTTA TTTTATTGCTTGAAC TERM 2836 2301674 - 2301702 + G 93 -10.4 -4.48997 | gap 1, overlap 2301671 TGAGATGGCGCGCGA CTGGCA-GCTGAT GTTC ATCAGCGTGCCGG TTATTTTATTGCTTG TERM 2837 2302110 - 2302123 + G 76 -8.1 -4.25104 | opp_overlap 2302103 2302108, overlap 2302122 TTCGAGAAGCAGATG CCTGC GCTG GCAGG TTTTGCTGAGCAAAA yejM 2301273 - 2303033 + | putative sulfatase TERM 2838 2303019 - 2303059 + T 71 -9.9 -3.24825 | opp_overlap 2303016, overlap 2303017 2303021 ACAGACGAGAAGCGT TTTATCGCTAACTGATTAA TTA TAAATCAGTTAGCGAAATA TCTTACTTGCAATCG TERM 2839 2303021 - 2303057 + T 81 -12.5 -3.18634 | opp_overlap 2303016, overlap 2303019 2303017 AGACGAGAAGCGTTT TATCGCTAACTGATTAA TTA TAAATCAGTTAGCGAAA TATCTTACTTGCAAT TERM 2840 2303202 - 2303218 + T 100 -8 -5.76633 | opp_overlap 2303202, overlap 2303194 AATCCCAAGAAAAAA CCAACC CTTAC GGTTGG TTTTTTTATATCTGC TERM 2841 2303218 - 2303202 - T 100 -8 -5.4756 | opp_overlap 2303194 2303202 AATCCCAAGAAAAAA CCAACC CTTAC GGTTGG TTTTTTTATATCTGC TERM 2842 2303245 - 2303276 + T 93 -8.8 -4.73682 | opp_overlap 2303249, overlap 2303249 CTGCAATTAATTCGA TAAACAGACCGTGA CACA TCACAGCCTGTTTA TTTTCTGTTATCAGA TERM 2843 2303249 - 2303272 + T 76 -5.2 -4.89519 | opp_overlap 2303249, overlap 2303245 AATTAATTCGATAAA CAGACCGTGA CACA TCACAGCCTG TTTATTTTCTGTTAT TERM 2844 2303272 - 2303249 - T 80 -9.6 -3.93638 | opp_overlap 2303249 2303245 AATTAATTCGATAAA CAGACCGTGA CACA TCACAGCCTG TTTATTTTCTGTTAT yejO 2305878 - 2303287 - | putative ATP-binding component of a transport system TERM 2845 2304026 - 2304053 + g 70 -9.8 -3.23853 | overlap 2304024 TGCTCAAAACCAGCT CCCGCATCAGTG GTCA CGTTGTTGCGGG TGTTAATTGCCGAAC narP 2306198 - 2306845 + | transcriptional regulator NarP TERM 2846 2306875 - 2306849 - T 91 -8 -5.18726 | opp_overlap 2306847, overlap 2306851 GGGGCACAATAAAAA TAGCCCGATG GATTTAT CATCGGGCTG AGATTTATGACAAAC TERM 2847 2306873 - 2306851 - T 90 -10.6 -4.22377 | opp_overlap 2306847, overlap 2306849 GGCACAATAAAAATA GCCCGATG GATTTAT CATCGGGC TGAGATTTATGACAA TERM 2848 2307025 - 2307052 + T 89 -6.3 -5.35815 | gap 1, overlap 2307026 2307027 ACTTTGTCATCAGTC TA-GCCCGATGG CATCA CCATCGGGCCTC TTTTTATTTACTCTC TERM 2849 2307026 - 2307050 + T 91 -11.4 -4.29436 | overlap 2307025 2307027 CTTTGTCATCAGTCT AGCCCGATGG CATCA CCATCGGGCC TCTTTTTATTTACTC TERM 2850 2307027 - 2307049 + T 90 -14.9 -3.16035 | overlap 2307026 2307025 TTTGTCATCAGTCTA GCCCGATGG CATCA CCATCGGGC CTCTTTTTATTTACT ccmH 2308108 - 2307056 - | subunit of heme lyase TERM 2851 2308115 - 2308103 - G 77 -3.3 -5.07486 | CACGCCCAATAAAAA CCTCA TTG TGCGG CCTCCTTACTGTATT dsbE 2308662 - 2308105 - | disulfide oxidoreductase ccmF 2310602 - 2308659 - | cytochrome c-type biogenesis protein TERM 2852 2309121 - 2309097 - G 71 -9.3 -3.54638 | ATAATTCTGGCTAAA GGCAATGCCAA CAA TTGTCACTGCC AGCCCCAGGTGAGCC ccmE 2311078 - 2310599 - | cytochrome c-type biogenesis protein CcmE ccmD 2311284 - 2311075 - | heme exporter protein C TERM 2853 2311242 - 2311231 - G 95 -7.2 -5.38047 | CAGCCAGACAAAAAA GGCG TAAC CGCC CATTGCGAAAAATTC ccmC 2312042 - 2311281 - | heme exporter protein C TERM 2854 2311438 - 2311403 - G 90 -7.5 -4.7629 | gap 1, opp_overlap 2311403 GCAGGAAGCCAAAAA TCGA-CCAGCGCAGCG GCGAA CGCATCGCCGGATCGA TACTTTGCTGCATCC ccmB 2312722 - 2312060 - | heme exporter protein B, cytochrome c-type biogenesis protein TERM 2855 2312191 - 2312175 - G 81 -10.8 -3.57797 | GGCAAATGCATAGAA GCCGCG TCCAT CGCGGC GGTGGCAAAGATGAG ccmA 2313342 - 2312719 - | cytochrome c biogenesis protein CcmA napC 2313957 - 2313355 - | cytochrome c-type protein NapC TERM 2856 2313781 - 2313807 + g 81 -6.6 -4.66163 | GCGCATTTCGTGGCA GCTAATGCAGAA CTC TTCGGTATTGGC TTTTTCCATCCCGGT napB 2314416 - 2313967 - | diheme cytochrome c550 TERM 2857 2314081 - 2314058 - G 70 -5.9 -4.18674 | overlap 2314059 TGCAGACAGAAATAA CGACGCGGA GCCACT TCCGCGCCC ACTTTGCCGTCGCTG napH 2315276 - 2314413 - | quinol dehydrogenase membrane component TERM 2858 2314749 - 2314725 - G 86 -3.5 -5.35815 | overlap 2314739 TAGATCAAATAAAAA CAGCGCG AGAATAAGCAG CGCGCCG CTGCCGAAGCCCATT TERM 2859 2314753 - 2314739 - G 88 -11.4 -3.80174 | overlap 2314725 ACAGCGCGAGAATAA GCAGCG CGC CGCTGC CGAAGCCCATTACCA napG 2315958 - 2315263 - | quinol dehydrogenase periplasmic component TERM 2860 2315820 - 2315851 + g 81 -12.4 -3.21276 | gap 1, overlap 2315824 TGGCTCCGGGCGGGC GCAA-CCGCACGC CAGATGC GCGTGCGGTTTGC TGTTGTAACCCCAGC TERM 2861 2315824 - 2315846 + g 90 -12 -3.97088 | overlap 2315820 TCCGGGCGGGCGCAA CCGCACGC CAGATGC GCGTGCGG TTTGCTGTTGTAACC napA 2318451 - 2315965 - | nitrate reductase napD 2318711 - 2318448 - | assembly protein for periplasmic nitrate reductase TERM 2862 2319338 - 2319328 - H 71 -6.8 -4.08767 | CCGATCGGGGTAAAA CCTG TAG CAGG ATCAAAAGAGTGGCG eco 2319603 - 2320091 + | ecotin precursor TERM 2863 2320201 - 2320237 + T 78 -12.3 -2.71011 | opp_overlap 2320203 CGCGTCTTATCAGTA TACGCCACATCCGGCAT ACC ATGCAGGATGTGGCACA TCATTACAACGCAAT TERM 2864 2320235 - 2320203 - T 100 -17.1 -2.82516 | opp_overlap 2320201 CGTCTTATCAGTATA CGCCACATCCGGCAT ACC ATGCAGGATGTGGCA CATCATTACAACGCA TERM 2865 2321497 - 2321467 - T 80 -9.6 -3.92641 | overlap 2321468 2321471 AACGGTATTGATAAA TGAACGCGGAGTAC GCA GCACGCCGCGCTCG ACCTGGTGCGCCCAG TERM 2866 2321496 - 2321468 - T 82 -13.1 -2.95102 | overlap 2321467 2321471 ACGGTATTGATAAAT GAACGCGGAGTAC GCA GCACGCCGCGCTC GACCTGGTGCGCCCA TERM 2867 2321493 - 2321471 - T 82 -11.2 -3.61988 | overlap 2321468 2321467 GTATTGATAAATGAA CGCGGAGTAC GCA GCACGCCGCG CTCGACCTGGTGCGC yojI 2323726 - 2322083 - | multidrug transporter membrane component/ATP-binding component TERM 2868 2322348 - 2322358 + g 79 -2.4 -5.28826 | opp_overlap 2322347 2322349, overlap 2322339 GCCAGCGCCAGCAAC AGCG CCA CGCG TTTTTTCTGCCCTTT alkB 2324452 - 2323802 - | alkylated DNA repair protein ada 2325516 - 2324452 - | O6-methylguanine-DNA methyltransferase; transcription activator/repressor yojL 2326645 - 2325590 - | thiamine biosynthesis lipoprotein ApbE TERM 2869 2326742 - 2326715 - R 80 -12.8 -3.10622 | opp_overlap 2326722, overlap 2326722 TACGCTGAAAACAAT GAAAAAAGGGCC CGCA GGCCCTTTGTTC GATATCCATCGAGAT TERM 2870 2326735 - 2326722 - R 100 -9.5 -5.43514 | opp_overlap 2326722, overlap 2326715 AAAACAATGAAAAAA GGGCC CGCA GGCCC TTTGTTCGATATCCA TERM 2871 2326722 - 2326735 + r 87 -9.5 -4.23213 | opp_overlap 2326722 2326715 AAAACAATGAAAAAA GGGCC CGCA GGCCC TTTGTTCGATATCCA ompC 2327878 - 2326757 - | outer membrane porin protein C TERM 2872 2328279 - 2328297 + H 100 -11 -5.48303 | TTACCCCTATTTCAA CCGGATGC CTC GCATTCGG TTTTTTTACCCTTCT TERM 2873 2329983 - 2329957 - g 70 -5 -4.56978 | opp_overlap 2329965 CTGGTAAACAAGAAA CTCAAGCAGGCG CAG CGTCTGTATGAG AAAAACCAGCAGGGG yojN 2328709 - 2331288 + | phosphotransfer intermediate protein in two-component regulatory system with RcsBC rcsB 2331305 - 2331955 + | transcriptional regulator RcsB TERM 2874 2331965 - 2331998 + T 95 -14.7 -3.55622 | opp_overlap 2331956 2331975, overlap 2331966 2331978 GACTAATCATCTGTA GGCCAGATAAGACGC GTTA GTGTCTTATCTGGCA TTTGCACCGATTGCC TERM 2875 2331966 - 2331997 + T 100 -18.2 -2.73159 | opp_overlap 2331956 2331975, overlap 2331965 2331978 ACTAATCATCTGTAG GCCAGATAAGACGC GTTA GTGTCTTATCTGGC ATTTGCACCGATTGC TERM 2876 2332079 - 2332112 + T 95 -14.7 -3.61178 | opp_overlap 2332079 2332076, overlap 2332080 2332092 GATTACATTAAAGTA GGCCAGATAAGACGC GTCA GTGTCTTATCTGGCA TTTGCACTGAATGCC TERM 2877 2332112 - 2332079 - T 80 -12.5 -3.00585 | opp_overlap 2332079 2332080 2332092, overlap 2332076 GATTACATTAAAGTA GGCCAGATAAGACGC GTCA GTGTCTTATCTGGCA TTTGCACTGAATGCC TERM 2878 2332080 - 2332111 + T 100 -18.2 -2.76492 | opp_overlap 2332079 2332076, overlap 2332079 2332092 ATTACATTAAAGTAG GCCAGATAAGACGC GTCA GTGTCTTATCTGGC ATTTGCACTGAATGC rcsC 2335004 - 2332155 - | hybrid sensory kinase in two-component regulatory system with RcsB and YojN TERM 2879 2334622 - 2334601 - G 75 -4.5 -4.8543 | gap 1, overlap 2334605 TAAGCCGCAGAAAAA TTATCGCGCC AGT AGCGC-ATAA ACCACGCCAATGACT TERM 2880 2334721 - 2334702 - G 82 -11.4 -3.55815 | opp_overlap 2334702, overlap 2334692 2334690 AAACAGCGGTTCAAA CGCAGGCA CATC CGCCTGCG TTTCTCGTCCACGCG TERM 2881 2334702 - 2334721 + g 86 -10.7 -3.96148 | opp_overlap 2334692 2334690 2334702 AAACAGCGGTTCAAA CGCAGGC ACATCC GCCTGCG TTTCTCGTCCACGCG TERM 2882 2335230 - 2335175 - R 78 -6 -4.78157 | overlap 2335179 ACGAAAAATAAGAAA TGACCAATCTGCCGACGCTTGTTAAT GGTT ATATCCTGGCGTCGGCAGATCGCCCA GCAGTCTTATCTGAA SFV_2294 2336055 - 2335279 - | hypothetical protein TERM 2883 2335513 - 2335525 + g 82 -7.7 -4.57073 | CGTGACATCCATATC CAGTG CAC CACTG TTTTTCAGCACGGTG TERM 2884 2335957 - 2335928 - G 70 -3.6 -4.60041 | gap 2, overlap 2335929 ATCGATTGTGAAAAA CTGGCATCTTCGCC CTCT GCCG--GATGCCAG CCAGAGAGCGGTGCG SFV_2295 2337631 - 2336060 - | hypothetical protein TERM 2885 2336298 - 2336313 + g 95 -6 -5.40072 | opp_overlap 2336298, overlap 2336299 TCGCCTTGTAATATA CGCCGC CACT GCGGCA TTTTTTTCGCCAGCC TERM 2886 2336299 - 2336312 + g 76 -9.5 -3.83561 | opp_overlap 2336298, overlap 2336298 CGCCTTGTAATATAC GCCGC CACT GCGGC ATTTTTTTCGCCAGC TERM 2887 2336594 - 2336584 - G 70 -6.8 -4.05446 | opp_overlap 2336587, overlap 2336586 2336587 CTGGCGAAGCAGAAA CACG CTG CGTG GCGCTGCTGTCGGGG TERM 2888 2337608 - 2337634 + g 76 -10.8 -3.29829 | overlap 2337609 CAGCTGATACAGTTG ATCGTGCTGCGC ACC GCGCAGCACCAG TTGTAACGGCGTCTC TERM 2889 2337609 - 2337633 + g 84 -14.3 -2.57683 | overlap 2337608 AGCTGATACAGTTGA TCGTGCTGCGC ACC GCGCAGCACCA GTTGTAACGGCGTCT TERM 2890 2337985 - 2338003 + r 71 -10.2 -2.72344 | TTGTGCGCTCAACGT CGGCTCCC GGC GGGAGCGG TACTTCCACCTGACC TERM 2891 2338815 - 2338836 + r 74 -10.9 -2.79679 | GGCATGTTATCCGCC TGCTCGGCA TAAC TGTCGAGCA TATGCTGCCAGTATT SFV_2296 2340822 - 2339983 - | IS911 ORF2 TERM 2892 2340391 - 2340402 + g 77 -5.8 -4.63218 | opp_overlap 2340387 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SFV_2297 2341151 - 2340849 - | IS911 ORF1 TERM 2893 2342598 - 2342585 - R 70 -2.3 -4.96848 | overlap 2342586 TCTCGGAGACAAAAA CGCCG CCTT CAGCA TCCTTACCCAGAATG SFV_2299 2344123 - 2343500 - | hypothetical protein TERM 2894 2343717 - 2343731 + g 93 -11.4 -4.2074 | opp_overlap 2343710 AAAAAAATCATATCG CCAGGC AGC GCCTGG TTTATGTCTTGGCCA TERM 2895 2343781 - 2343797 + g 75 -5.7 -4.59773 | GAATCAAATTAATCG CGGTCAC GTA GGGGCCG TTTTTCCCGCTCCCC SFV_2300 2345241 - 2344120 - | hypothetical protein TERM 2896 2345033 - 2345048 + g 74 -2.4 -5.07567 | overlap 2345038 GCGCTGACCACGATG CGCAGG CGTA CTGGCG TTTTTTCGGCTGTAC TERM 2897 2345079 - 2345094 + g 81 -4.6 -5.03314 | opp_overlap 2345080, overlap 2345080 GCTCTTCCAGGCCAA AGCTGG CTTG CCAGCG TTTTTTACCGCTCAA SFV_2301 2345808 - 2345302 - | hypothetical protein TERM 2898 2345359 - 2345329 - G 72 -7.6 -3.92542 | overlap 2345332 2345354 2345355 2345357 GGTAGCGGCAAACAA CAATGGCTCCAGCA GTT TGCTTAAACCACTG CGCTGGATCAGCACC TERM 2899 2345554 - 2345544 - G 78 -5.4 -4.73682 | TCTGATAATAGAAAA CGAA ATC TTCG CTCAGAACATCGTGG TERM 2900 2345905 - 2345884 - R 81 -8.7 -4.55023 | opp_overlap 2345884, overlap 2345879 CCTAATACGACAAAA GCCCAGACT TTGC AGCCTGGAC TTTTCAATTCAAACA TERM 2901 2345922 - 2345935 + r 76 -8.1 -4.13767 | opp_overlap 2345922 TTTCAATTCAAACAA GGGAG ATAG CTCCC TTTTGGCATGAAGAA TERM 2902 2345935 - 2345922 - R 74 -8.1 -4.0098 | opp_overlap 2345922 TTTCAATTCAAACAA GGGAG ATAG CTCCC TTTTGGCATGAAGAA gyrA 2348584 - 2345957 - | DNA gyrase subunit A TERM 2903 2347712 - 2347732 + g 82 -2.4 -5.45802 | overlap 2347704 AGACTCGTCACGCAG CGCGCTGA TGCCT TCCACGCG TTTTTCTTTTACCAG ubiG 2348731 - 2349453 + | 3-demethylubiquinone-9 3-methyltransferase TERM 2904 2349486 - 2349500 + F 73 -10 -3.30124 | overlap 2349481 2349497 GCCAATGCCTGATGC GACGCT TGC AGCGTC TTATCAGGCCTACAA TERM 2905 2349497 - 2349541 + F 88 -12.3 -3.53811 | opp_overlap 2349538, overlap 2349486 2349528 ATGCGACGCTTGCAG CGTCTTATCAGGCCTAC AAATGCTCTCC GTAGGCCAGATAAGGCG TTTACGCCGCATCCG TERM 2906 2349621 - 2349608 - f 71 -3.7 -4.87665 | overlap 2349609 2349610 CGTCATCGACAAAAA CCCTG CCGT CTGGG CAAAATCATCACTCC TERM 2907 2353166 - 2353138 - f 80 -6 -5.07567 | gap 1, overlap 2353163 TCATATCCGAAAAAA CCAG-CCATTGCC CATC GGCGATAGACTGG CCCCCTGAATCTCCA SFV_2304 2353250 - 2353615 + | insertion sequence 2 OrfA protein SFV_2305 2353573 - 2354478 + | insertion element IS2 transposase InsD TERM 2908 2356340 - 2356327 - g 77 -6.7 -4.56597 | GCTGGTGTTGAAAAA CAACC GTGG GGTTG AAGGCAACCGCGTGC TERM 2909 2357199 - 2357187 - g 70 -4.8 -4.4959 | opp_overlap 2357197 GTGAATCAATCAAAA CGCA CGGCC TGCG TAACTCCACGCTTTC nrdA 2355365 - 2357650 + | ribonucleotide-diphosphate reductase subunit alpha TERM 2910 2357720 - 2357677 - g 90 -13.3 -3.53811 | opp_overlap 2357669 2357685, overlap 2357717 2357719 CGGATGCGGCGTAAA CGCCTTATCCGGCCTAC GGCTCGGTTT GTAGGCCTGATAAGACG CGCCAGCGTCGCATC TERM 2911 2357771 - 2357788 + G 72 -7.7 -3.88291 | gap 1 AGCGTGAACGCCTTA TCCG-GCC TAC GGCTCGGA TTTGTAGGCCTGATA nrdB 2357653 - 2359014 + | ribonucleotide-diphosphate reductase subunit beta yfaE 2359014 - 2359268 + | 2Fe-2S ferredoxin YfaE inaA 2359972 - 2359322 - | hypothetical protein TERM 2912 2360426 - 2360401 - R 93 -15.5 -2.86743 | overlap 2360403 AAATTTGATATGAGA CAGGATGGCGC ATGA ACGCCATCCTG CAGTAACATTACTCT TERM 2913 2360424 - 2360403 - R 80 -12.3 -2.97925 | overlap 2360401 ATTTGATATGAGACA GGATGGCGC ATGA ACGCCATCC TGCAGTAACATTACT glpQ 2361511 - 2360435 - | glycerophosphodiester phosphodiesterase glpT 2362874 - 2361516 - | sn-glycerol-3-phosphate transporter TERM 2914 2361721 - 2361737 + g 79 -3.5 -5.08824 | AGCCCGGTAAAGCCC GCTGCCG TAC CTGCCGC TTTTTTCGGTGCCAG TERM 2915 2362153 - 2362172 + g 76 -4.2 -4.94972 | gap 1 ATGAAGATTTGCTTC GCGG-TCAG CTC CTGTTCCGC TTTTTCGTTATAGTC TERM 2916 2362610 - 2362595 - G 70 -6 -4.25104 | CTGCGGGCAGGAAAA CGCGCG GATT CGAGCG ATCCGATACCGAACC glpA 2363147 - 2364775 + | sn-glycerol-3-phosphate dehydrogenase subunit A TERM 2917 2364849 - 2364834 - g 72 -4.6 -4.66833 | CTGCAACTGCAAAAA CACGGC CTGC GCTGTG CCATTGTCACGCGTG TERM 2918 2365787 - 2365777 - g 74 -8.2 -3.86897 | TTGATGTGCTACAAA CCGC AAC GCGG GGTGAATGGTATAAG glpB 2364765 - 2366024 + | anaerobic glycerol-3-phosphate dehydrogenase subunit B glpC 2366021 - 2367211 + | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 2919 2367224 - 2367251 + F 100 -14.2 -4.65895 | TAAACTCCCTTCTGA TGCCCGGTAAGC ATGT GGTTACCGGGCA TTTTTGCGTACACGA TERM 2920 2367545 - 2367506 - g 71 -9.4 -3.4376 | gap 1 ATACATTTACCAGAA CCACTGCGCAAGCTTTGCA ACC TGCAAACCTTACGCC-TGG AACCCACTAGTTTTA yfaD 2367404 - 2368354 + | hypothetical protein SFV_2317 2368907 - 2368395 - | hypothetical protein SFV_2318 2369249 - 2368920 - | hypothetical protein SFV_2319 2370122 - 2369331 - | hypothetical protein TERM 2921 2369626 - 2369608 - G 87 -4.5 -5.27335 | gap 1, overlap 2369609 TGTGGTAAAGAAAAA CGCTCGCG CAGG CGCG-GCA GGATTTCGTGCTCGA SFV_2320 2370751 - 2370209 - | hypothetical protein yfaO 2370946 - 2371455 + | hypothetical protein TERM 2922 2371483 - 2371462 - T 82 -13.1 -2.93073 | opp_overlap 2371452, overlap 2371445 2371459 CTTCTTTAACAATGA TGACAGCCA TCAC TGGCTGTCA GATTGAAAATTTAGT ais 2372153 - 2371494 - | protein induced by aluminum SFV_2323 2372404 - 2373543 + | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase SFV_2324 2373547 - 2374515 + | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase TERM 2923 2374737 - 2374749 + G 91 -7.7 -5.0432 | CGCATTGCCCAACTG TCACC AGA GGTGA TTTTCTCTTTTTATT TERM 2924 2375975 - 2375955 - g 70 -4 -4.59773 | opp_overlap 2375955 GCCTATGGCGAAAAA GAGGGT TTACAGTTC ACCCTC TTCCTCCCGTTTAAC SFV_2325 2374515 - 2376497 + | hypothetical protein SFV_2326 2376494 - 2377384 + | hypothetical protein TERM 2925 2377606 - 2377567 - g 75 -5.7 -4.59773 | opp_overlap 2377567 2377565 2377568 2377605, overlap 2377568 CGTTATTTCGAAAAA CCCATTGCCGGATACTG GATTAA CAGCATTGGGCAATGGC TATTTGGCGCGAATA TERM 2926 2378416 - 2378394 - g 81 -4.8 -5.14563 | opp_overlap 2378397 GCTGGCAGCAAAAAA TAATCCTCTG GCG CTGCGGATTA ATGGCTGGATTAACA TERM 2927 2378614 - 2378589 - g 72 -6.9 -4.19678 | gap 1 GTACACCTTAACAAA CGTCGAAAAGAC CTG GTCTTT-CGCCG CGCTTTGCCCGCTGG arnT 2377384 - 2379036 + | 4-amino-4-deoxy-L-arabinose transferase SFV_2328 2379033 - 2379368 + | sucrose-6 phosphate hydrolase SFV_2329 2379368 - 2379754 + | hypothetical protein menE 2381480 - 2380125 - | O-succinylbenzoic acid--CoA ligase TERM 2928 2381364 - 2381399 + g 70 -9.7 -3.25015 | gap 1, opp_overlap 2381364 2381352 AAAGCCCGTAGCTAA CTCATC-GACGCGAGC ACAAA GCTCGCGCCAGTTGAG TTGCTCGTCATTAAG TERM 2929 2381399 - 2381364 - G 75 -11.9 -3.06312 | gap 1, opp_overlap 2381364, overlap 2381352 AAAGCCCGTAGCTAA CTCATC-GACGCGAGC ACAAA GCTCGCGCCAGTTGAG TTGCTCGTCATTAAG menC 2382403 - 2381477 - | O-succinylbenzoate synthase TERM 2930 2381839 - 2381856 + g 81 -9.1 -4.09511 | opp_overlap 2381838 TTTCACGGGCAAACG CTCGCGA ATCA TCGCGGG TTTTGCACGGCTCTT TERM 2931 2382353 - 2382363 + g 85 -8.2 -4.57837 | opp_overlap 2382350 CAGGCAAACGTACAG CCCG TCG CGGG TTTTTAACCGCCTGT menB 2383296 - 2382439 - | naphthoate synthase TERM 2932 2383341 - 2383318 - R 84 -10.4 -3.91897 | gap 1, opp_overlap 2383331 TCCTTTAGTCAGAAA CGCAAGATCTG CGC CAGA-CTTGCG ATTACGCCAGCGGGA yfbB 2384069 - 2383311 - | acyl-CoA thioester hydrolase YfbB TERM 2933 2383346 - 2383371 + g 74 -9.7 -3.48276 | gap 1, overlap 2383331 CCAGACTTGCGATTA CGC-CAGCGGGA TTT TCCCGATGCGCG TTATGTCCGGCGCGA TERM 2934 2383478 - 2383467 - G 86 -5.8 -5.06472 | ACATAAATAATAAAA CGCA AATG TGCG GGCGCTAAGGTTAGC TERM 2935 2383536 - 2383502 - G 70 -10.8 -2.80796 | gap 1, opp_overlap 2383535, overlap 2383501 2383504 2383522 2383523 GGTTAGCACGTAAAT CAGGCTGGACGGCGA GAGAAG TCGCC-TCCAGCATG GCGGCAAGGGTTGCG TERM 2936 2383785 - 2383763 - G 72 -7.6 -3.95051 | CAATAACCCCACAAA GCCCCGCCAG CCC CTGGCAAGCC GCCATCATCGCCACC menD 2385925 - 2384066 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase TERM 2937 2385096 - 2385106 + gr 71 -3.2 -4.81249 | TGTCGCCAGAAGAAC CAGT CGC GCTG TTTTTCACTTTCCAG menF 2387120 - 2385825 - | menaquinone-specific isochorismate synthase TERM 2938 2386259 - 2386278 + gr 80 -5.6 -4.91109 | AGATATCTTCCACCA CCAGCATG TTCT CGCGCTGG TTTTTATCATCCGCC TERM 2939 2387185 - 2387155 - R 82 -13.4 -2.85847 | opp_overlap 2387143 AAGCCTCACATTATA CGGGGTACTACA AAAAAAA TGCAGTACCCCG GTGTAGGGAGGTTTT elaB 2387504 - 2387199 - | hypothetical protein elaA 2388020 - 2387559 - | hypothetical protein elaC 2388067 - 2389002 + | ribonuclease Z SFV_2340 2389557 - 2389357 - | putative IS1 encoded protein insB 2389632 - 2390135 + | IS1 ORF2 yfbM 2390219 - 2390647 + | hypothetical protein TERM 2940 2390670 - 2390690 + T 74 -8.2 -3.97368 | opp_overlap 2390671, overlap 2390671 AGAGCGCCAAAAAAA ACCGCCGA ACATG TCGGCGGC TTTCTGACTTACAAA TERM 2941 2390689 - 2390671 - T 100 -11.7 -5.76949 | opp_overlap 2390671 2390670 GAGCGCCAAAAAAAA CCGCCGA ACATG TCGGCGG CTTTCTGACTTACAA TERM 2942 2390671 - 2390689 + T 78 -11.7 -2.981 | opp_overlap 2390671, overlap 2390670 GAGCGCCAAAAAAAA CCGCCGA ACATG TCGGCGG CTTTCTGACTTACAA nuoN 2391991 - 2390714 - | NADH dehydrogenase subunit N TERM 2943 2391353 - 2391341 - G 73 -9.1 -3.67296 | GATGATGGAGGCAAA GGCGA TAA TCGCC AGTACTACGCGAATC nuoM 2393707 - 2392178 - | NADH dehydrogenase subunit M TERM 2944 2393141 - 2393131 - G 74 -2.4 -5.10461 | overlap 2393132 2393134 2393135 TGTAGTGAACAAAAA CCAG CGC CAGG ATGGCGATCAACATC TERM 2945 2393499 - 2393487 - G 75 -6.9 -4.41956 | ATAGAGATACCAAAA CGCGG GAT CCACG GCATGTCGAATTCAG TERM 2946 2393791 - 2393833 + r 71 -7.7 -3.88232 | gap 1, overlap 2393792 TCTCTTCGGACTGGG GGTAGTGTCGGATGCGCCGC GAAG GCAGCTTATCCGAC-CTACG TTCTTATATGCCCAG TERM 2947 2393792 - 2393832 + r 74 -11.2 -2.92618 | gap 1, overlap 2393791 CTCTTCGGACTGGGG GTAGTGTCGGATGCGCCGC GAAG GCAGCTTATCCGAC-CTAC GTTCTTATATGCCCA nuoL 2395712 - 2393871 - | NADH dehydrogenase subunit L TERM 2948 2394367 - 2394385 + g 72 -4.6 -4.68601 | overlap 2394365 CTGTGAGTTACCCCT TTCACG GCGTGAG CGTGAA TTTGTTCTTTTCCGT TERM 2949 2395197 - 2395178 - G 78 -7.8 -4.33165 | CGAAAGCGAGGAAAA CGTCACCC ACAC GGGTCACG ACGAACGCTTTCATT nuoK 2396011 - 2395709 - | NADH dehydrogenase subunit K nuoJ 2396562 - 2396008 - | NADH dehydrogenase subunit J nuoI 2397116 - 2396574 - | NADH dehydrogenase subunit I nuoH 2398108 - 2397131 - | NADH dehydrogenase subunit H TERM 2950 2397501 - 2397477 - G 77 -12.1 -2.71712 | overlap 2397476 TCCGGCTGGTCAAAC GGGTGACGGTG ACA CACCGCCACGC CCGCGATGGCAAAGG TERM 2951 2397951 - 2397931 - G 90 -14.7 -2.71364 | TCATGTCCGCAACCA GCTGGAGCG AAC CGCCCCAGC CAACACGGTTAGGTC nuoG 2400831 - 2398105 - | NADH dehydrogenase subunit G TERM 2952 2400068 - 2400079 + g 70 -5.8 -4.18018 | TAGTGGTTTACCGTA CCGT TGTA ACGG TTTTCGATACGACGC TERM 2953 2400723 - 2400704 - G 73 -11.4 -2.71144 | CACTGGCGGCAAGCA CCGACGCT TCCC AGCGCCGG ATGCCAGCAAAAGTA nuoF 2402221 - 2400884 - | NADH dehydrogenase I subunit F TERM 2954 2401343 - 2401357 + g 88 -11.4 -3.84451 | GTCAGTCCCCGCGCC GCCTGG CTG CCAGGC TTTAAATTTCAGACC TERM 2955 2402144 - 2402158 + g 81 -10 -3.96148 | overlap 2402143 GCTGCGGTATTCGTC CAGCCA CAC TGGCTG TTTGTCATCGCGCAG nuoE 2402718 - 2402218 - | NADH dehydrogenase subunit E nuoC 2404511 - 2402721 - | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 2956 2404243 - 2404232 - G 72 -5.8 -4.41548 | opp_overlap 2404241, overlap 2404240 2404241 TCAGATGGTAGAAAA CGGA AAAA TCCG CGGCAGGTAACCCTT TERM 2957 2404264 - 2404240 - G 74 -3.3 -4.89729 | opp_overlap 2404241, overlap 2404232 2404241 TAGAAAACGGAAAAA TCCGCGGCAGG TAA CCCTTCGCGGT GTGTGCGCAGACGTT nuoB 2405279 - 2404617 - | NADH dehydrogenase subunit B nuoA 2405738 - 2405295 - | NADH dehydrogenase subunit A TERM 2958 2405440 - 2405426 - G 100 -2.8 -5.71295 | ACACAAAAATAAAAA TTGCAG CTT CCACAA AGCCTACCCAGCCGC TERM 2959 2406292 - 2406327 + r 100 -8.9 -5.09173 | opp_overlap 2406295, overlap 2406293 2406295 GATTTTTACTAAAAA AAAGCCGCTGGGGTT TAAAAC ACCCCCAGCGGCTCG TTTTTTACACTATTG TERM 2960 2406293 - 2406326 + r 88 -12.4 -3.6442 | opp_overlap 2406295, overlap 2406292 2406295 ATTTTTACTAAAAAA AAGCCGCTGGGGTT TAAAAC ACCCCCAGCGGCTC GTTTTTTACACTATT TERM 2961 2406324 - 2406295 - R 100 -15 -5.86061 | opp_overlap 2406295 2406293 2406292 TTTTACTAAAAAAAA GCCGCTGGGGTT TAAAAC ACCCCCAGCGGC TCGTTTTTTACACTA TERM 2962 2406295 - 2406324 + r 100 -15 -3.38726 | opp_overlap 2406295, overlap 2406293 2406292 TTTTACTAAAAAAAA GCCGCTGGGGTT TAAAAC ACCCCCAGCGGC TCGTTTTTTACACTA lrhA 2407308 - 2406370 - | LysR family NADH dehydrogenase transcriptional regulator TERM 2963 2406591 - 2406617 + g 77 -12.2 -2.78679 | overlap 2406590 GGCTCATCATCTCAA CCGGCCTTGCCG TCA CGCCAAGACCGG CTTTCACTGCCGCAC TERM 2964 2407058 - 2407032 - G 72 -11.1 -3.12482 | opp_overlap 2407039, overlap 2407036 GAAGATTACTGAACA TTAATGATGAG CAGGC CTCATCATTAA AACGCAGGATTTTCC TERM 2965 2407078 - 2407061 - G 72 -6.3 -4.30576 | gap 1, overlap 2407063 GCCTCATCATTAAAA CG-CAGGA TTT TCCTGGCG TAACCAAGAAGTTGA TERM 2966 2408238 - 2408222 - H 76 -2.1 -5.30189 | GATAACAGCAAAAAA GGTCAAG ATT CATGTCC CCCATTGAAAAATCC TERM 2967 2408472 - 2408450 - g 70 -10.6 -2.75963 | overlap 2408449 ATTGCGATTCCAAAG GGCTTTACTC CGC GCGTAAAGCC ATCATGCAGCACTAC SFV_2357 2408233 - 2409450 + | aminotransferase AlaT TERM 2968 2409460 - 2409486 + F 86 -13.8 -3.28791 | CTGTAATCTTAATTT CACTGCCGGA GATTGCA TCCGGCAGTG TTATCCCGCCACAAT TERM 2969 2410042 - 2410015 - g 70 -4.8 -4.56597 | gap 1, overlap 2410017 2410030 TCTTGCTGGCAAAAA CGCGACTGGAAGC GAC GCTTGAAG-CGCG TCGCAGCCAGGAGAT TERM 2970 2410062 - 2410076 + G 72 -7.2 -4.1673 | AGCCAGGAGATGGAC TACTTC ATG GAAGTA TTTGTTCCCAGCTTC SFV_2358 2409534 - 2410133 + | hypothetical protein TERM 2971 2410141 - 2410188 + T 81 -12.8 -3.28712 | gap 1, opp_overlap 2410166 CGCTGTAAGCAGCCG GAGTCTG-CGTCGCATCAGGC AATAAGC GCCGGATGCGACATCAGGCTC TTGTCAAAACGGAAA yfbS 2411949 - 2410192 - | putative transport protein TERM 2972 2412091 - 2412074 - R 100 -9.8 -5.24129 | TTCTGCCATAAAAAA GCCCCG ACGAGA CGGGGC TAAATCATGATCAGG yfbT 2412761 - 2412111 - | putative phosphatase TERM 2973 2412391 - 2412404 + g 76 -9.5 -3.79419 | overlap 2412390 ACAAACACCTCTGGT GCGGG AAGC CCCGC TATTTTATGGCGCGC SFV_2361 2413266 - 2412772 - | hypothetical protein TERM 2974 2413323 - 2413305 - R 89 -6 -5.76949 | opp_overlap 2413305 TACGGTGAAAAAAAA GAAGGC TGAGTAT GCCTTC TTTTATATGCGTAAT TERM 2975 2413305 - 2413323 + r 74 -6 -4.55689 | opp_overlap 2413305 TACGGTGAAAAAAAA GAAGGC TGAGTAT GCCTTC TTTTATATGCGTAAT SFV_2362 2413804 - 2413349 - | hypothetical protein ackA 2414142 - 2415344 + | acetate kinase TERM 2976 2415348 - 2415375 + F 100 -16.4 -4.36914 | gap 1, overlap 2415350 CTGACTGCCTGATTT CA-CACCGCCAGC TCA GCTGGCGGTGCTG TTTTGTAACCCGCCA TERM 2977 2415350 - 2415372 + F 100 -19.2 -2.8733 | overlap 2415348 GACTGCCTGATTTCA CACCGCCAGC TCA GCTGGCGGTG CTGTTTTGTAACCCG TERM 2978 2416390 - 2416405 + G 78 -9 -3.96148 | overlap 2416394 CGAACGTGCTTTCGC TACCGG CCTG CCGGTA TTTATGGTGAACACC pta 2415419 - 2417563 + | phosphate acetyltransferase TERM 2979 2417604 - 2417626 + F 100 -10.7 -5.64304 | CTGCGGATATCTGAA CCGGAAATA ATCAC TATTTCCGG TTTTTTATTCTCTTA TERM 2980 2418576 - 2418595 + G 74 -8.6 -3.87149 | overlap 2418548 TTCGTGAAAAGCAGG CGGATGTT GAAC AACGTCCG TTTACCTTTGGTGAC yfcC 2417795 - 2419273 + | hypothetical protein TERM 2981 2419283 - 2419300 + T 100 -12.7 -5.32944 | opp_overlap 2419278 2419285 CACTAAAAATGTTAA GAGCCGC AATT GCGGCTC TTTTTTCATTCTGCC TERM 2982 2419298 - 2419285 - T 71 -9.5 -3.17553 | opp_overlap 2419283, overlap 2419278 CTAAAAATGTTAAGA GCCGC AATT GCGGC TCTTTTTTCATTCTG SFV_2366 2419848 - 2419306 - | putative regulator TERM 2983 2419394 - 2419412 + g 82 -9.6 -4.16016 | opp_overlap 2419393 GAGTCTGGAGTGAAC TCATCGCA GCG TGCGGTGA TTTCTTCCGGCGTCA yfcE 2420457 - 2419906 - | phosphodiesterase yfcF 2421157 - 2420513 - | hypothetical protein TERM 2984 2420849 - 2420864 + g 86 -9 -4.42386 | CCAGGCCTGAATCTG TCGTGC ACGC GCACGA TTTTCTAAATCAAGC TERM 2985 2421560 - 2421540 - g 70 -5.4 -4.37092 | overlap 2421543 ATCTGGCTGAGAAAA CAGGACTC TTTTT GAGTCATG AAACGCGTGAGCGCG yfcG 2421293 - 2421940 + | putative S-transferase folX 2421997 - 2422359 + | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase TERM 2986 2422645 - 2422623 - g 71 -2.6 -4.93968 | overlap 2422625 ACTCACAAGCAAAAA GAGCGTCTCT GCC AAAGCCGCTG GAATATCACGCAAAA TERM 2987 2422837 - 2422797 - g 93 -12.6 -3.93583 | gap 1, overlap 2422782 GAATTTACTCATAAA CTCTGCGCCC-GCTGGGAA GAGA TTGCCTGCCGGGCGCAAAG TGACAAAACGCGAGT SFV_2371 2422380 - 2423273 + | putative sugar nucleotide epimerase yfcI 2424211 - 2423321 - | hypothetical protein TERM 2988 2424187 - 2424175 - G 71 -9.1 -3.51168 | overlap 2424173 AAAAAGATTTAAATA CCGCA TCA TGCGG CGTGGAAGTTGTCGA TERM 2989 2424402 - 2424376 - R 71 -7.3 -4.08064 | gap 1, overlap 2424378 AATTCCCCTTGAAAA TACTCCGGCAGC GTTA GCCACCGGAG-A GGAAATTATTTCAGT TERM 2990 2424401 - 2424378 - R 88 -12.4 -3.63744 | overlap 2424376 TTCCCCTTGAAAATA CTCCGGCAGC GTTA GCCACCGGAG AGGAAATTATTTCAG hisP 2425181 - 2424408 - | histidine/lysine/arginine/ornithine transporter subunit hisM 2425905 - 2425189 - | histidine transport, membrane protein M TERM 2991 2425214 - 2425227 + g 72 -4.5 -4.64766 | opp_overlap 2425205, overlap 2425215 GAAGAAGGTTTCACA TGCTG CAAC CAGCG TTTTTCCGCTCTGCG hisQ 2426588 - 2425902 - | histidine transport system permease protein TERM 2992 2426624 - 2426658 + r 70 -4.9 -4.42062 | gap 1, overlap 2426625 TGGTGAATTACCGCC TCTTGTCTCCCTCCGG TTAC CCGAAGGGAG-CGGGC TTTCTTTCACCGATG hisJ 2427460 - 2426678 - | histidine-binding periplasmic protein of high-affinity histidine transport system TERM 2993 2427320 - 2427332 + g 84 -4.1 -5.27477 | opp_overlap 2427312 ATCGAAACCAACCAG TTCGC CTT GTGAA TTTTTTGATTCAAAT argT 2428382 - 2427681 - | lysine-, arginine-, ornithine-binding periplasmic protein TERM 2994 2427807 - 2427830 + g 100 -5.2 -5.63645 | ATCTTTACGTAGCCC TACACCGGTG CCAT CACCGAAGTA TTTTTTGTCTTTTAC SFV_2378 2429272 - 2428367 - | insertion element IS2 transposase InsD SFV_2379 2429640 - 2429230 - | insertion sequence 2 OrfA protein TERM 2995 2430056 - 2430038 - R 95 -13.2 -4.07687 | overlap 2430049 ATCGCGGTTGCAAAA TTGCCCTG AAA CAGGGCAA CAGCGGAGTTATGCG ubiX 2430634 - 2430065 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 2996 2430717 - 2430699 - R 78 -12.4 -2.53263 | GGGAGTTGCAAGTCA GGGTGCCA GAC CGGCACCC TCAGCGAAGGCATCA purF 2432247 - 2430730 - | amidophosphoribosyltransferase TERM 2997 2431149 - 2431162 + g 73 -3.7 -4.82901 | GGACGATGGAGTCGT CGACC AGCA GGACG TTTTTATCGCGGAAC TERM 2998 2432018 - 2431984 - G 72 -7.2 -4.28774 | gap 2 GGAGTTAACGTAAAA CGGCTG-C-GCTTCAG AGGCG CTGGAGCTGCCAGCCG TAGGGTAACGCACAT cvpA 2432772 - 2432284 - | colicin V production protein TERM 2999 2432900 - 2432875 - R 100 -9.8 -5.1356 | GCGCATCAATAAAAA TGGCGCTGAA AAAATA TTCAACGCCA TCGACTTTTTATGCC dedD 2433693 - 2433031 - | hypothetical protein folC 2434951 - 2433683 - | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase TERM 3000 2434350 - 2434363 + g 70 -3.7 -4.65895 | opp_overlap 2434335 GGCATTTCCGGCTCA CCGAC AATT GCCGG TTTTTCGCTGCGGAA TERM 3001 2434927 - 2434903 - G 86 -9.1 -4.38927 | TTTCCAGATAAGAAA GCCACGAAGCC AGA GGCGACGCGGC TTGAGGAGTGCGTTT TERM 3002 2435010 - 2434988 - R 100 -17 -4.46656 | opp_overlap 2434988 GTGAGAATAGCAAAA GGGCAGAGCC AGT GGCCCTGCCC TTATCAGTTATCAGG TERM 3003 2434988 - 2435010 + r 93 -14.8 -3.45054 | opp_overlap 2434988 GTGAGAATAGCAAAA GGGCAGAGCC AGT GGCCCTGCCC TTATCAGTTATCAGG accD 2435935 - 2435021 - | acetyl-CoA carboxylase subunit beta TERM 3004 2435957 - 2435971 + r 71 -3.5 -4.78848 | CCTTTCTGTCTGAAC CTGGT TCGAT GCCAG TTTTATCTTTGGGGA TERM 3005 2436079 - 2436067 - R 77 -3.3 -5.24531 | ACTTTGGATAAAAAA GTGGT CGA ACCGC GGAGTTACTTTTTAT dedA 2436750 - 2436091 - | hypothetical protein TERM 3006 2436767 - 2436823 + r 80 -9.5 -3.90241 | overlap 2436778 2436818 TTTGCCTATGCCTTG TACTCGTCATCTTTCAGGCTGTAACTA CGT TGGCTACAGCCTGAAATGTTCCGAGCA TTATTCTCGTTAGTC TERM 3007 2436778 - 2436812 + r 93 -15.2 -3.03338 | overlap 2436767 CTTGTACTCGTCATC TTTCAGGCTGTAACTA CGT TGGCTACAGCCTGAAA TGTTCCGAGCATTAT truA 2437645 - 2436833 - | tRNA pseudouridine synthase A TERM 3008 2437397 - 2437422 + g 72 -8.1 -3.92542 | ATTTACGCCCAAGGT CCACGCCGCGT CTTT GCGCTGCGCGG TTGTTTCGAAATGCA usg 2438658 - 2437645 - | putative semialdehyde dehydrogenase pdxB 2439860 - 2438724 - | erythronate-4-phosphate dehydrogenase TERM 3009 2439390 - 2439353 - G 82 -12 -3.48063 | overlap 2439355 TATGGAAAGTCAGAA TATCCGCGCGCTGGAC TAACTC ATCCAGCGAGCGGAAA TCACCCTCATCCCCA TERM 3010 2439388 - 2439355 - G 100 -14.6 -3.30797 | overlap 2439353 TGGAAAGTCAGAATA TCCGCGCGCTGGAC TAACTC ATCCAGCGAGCGGA AATCACCCTCATCCC div 2439959 - 2440954 + | flagella biosynthesis regulator SFV_2391 2442129 - 2440951 - | hypothetical protein TERM 3011 2442076 - 2442060 - G 78 -5.1 -4.85599 | TGTAGGTGAGAAAAA CCGCA AAAGAGA TGCGG AAGAGCGAAAAACTG TERM 3012 2442290 - 2442321 + r 81 -12.4 -3.14132 | opp_overlap 2442297, overlap 2442297 CGATTGTCAATGATG TGAAAAAGGGAACC ATCA GGTTCCCTTTTGCG TTAGTGCCGGAGGCC TERM 3013 2442297 - 2442314 + r 91 -11.3 -4.30014 | opp_overlap 2442297, overlap 2442290 CAATGATGTGAAAAA GGGAACC ATCA GGTTCCC TTTTGCGTTAGTGCC TERM 3014 2442314 - 2442297 - R 95 -11.3 -4.64598 | opp_overlap 2442290 2442297 CAATGATGTGAAAAA GGGAACC ATCA GGTTCCC TTTTGCGTTAGTGCC fabB 2443496 - 2442384 - | 3-oxoacyl-[acyl-carrier-protein] synthase I mnmC 2443784 - 2445790 + | 5-methylaminomethyl-2-thiouridine methyltransferase SFV_2394 2446189 - 2445911 - | hypothetical protein SFV_2395 2446771 - 2446223 - | putative transporting ATPase yfcA 2447514 - 2446771 - | hypothetical protein TERM 3015 2447138 - 2447123 - G 75 -4.6 -4.84017 | AATCCGTCATAAAAA CCGACG CAGC CACCGG CAATTAACGCGAAGG mepA 2448404 - 2447580 - | penicillin-insensitive murein endopeptidase TERM 3016 2448310 - 2448325 + g 72 -4.6 -4.61482 | ATCGATTGTGCGCTA CCCGGC ACAG GTTGGG TTATTTTTTGCCACG TERM 3017 2448350 - 2448394 + g 80 -5.5 -4.95211 | GCCACGGCGTCGCTG CCAGGCTAGCGCTACTGGC AAGCAGA GCCAGCAGCGCAATCGCGG TTTTGTTCATTTTTT aroC 2449493 - 2448408 - | chorismate synthase TERM 3018 2449050 - 2449064 + g 77 -2.8 -5.03314 | opp_overlap 2449050, overlap 2449052 GATTTCAATACCAAA TTTCTC GGA GAGATA TTTTTTGGCAATCGC yfcB 2450793 - 2449528 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase SFV_2399 2450626 - 2451177 + | hypothetical protein yfcO 2452066 - 2451281 - | hypothetical protein TERM 3019 2451750 - 2451740 - G 78 -5.4 -4.75472 | TGTATAGGAATAAAA GGAT GCG ATCC AAGGGCAACCATAAT SFV_2402 2452682 - 2452158 - | putative minor fimbrial subunit SFV_2403 2453149 - 2452679 - | putative minor fimbrial subunit SFV_2404 2453652 - 2453146 - | putative fimbrial protein yfcS 2454421 - 2453699 - | putative chaperone TERM 3020 2453848 - 2453838 - G 74 -8.2 -3.87075 | opp_overlap 2453834 ACTATTGGCGAGAAA CCGG CTG CCGG ATTGCCATTTTTCTG TERM 3021 2455294 - 2455319 + r 77 -11.3 -3.28712 | opp_overlap 2455299, overlap 2455296 TCCGTCCCACTGCCA TAGTACCGTTA TAGC TAACGGTACTG TTGTCGCCCCACGGC TERM 3022 2455296 - 2455317 + r 79 -11.7 -3.21276 | opp_overlap 2455299, overlap 2455294 CGTCCCACTGCCATA GTACCGTTA TAGC TAACGGTAC TGTTGTCGCCCCACG TERM 3023 2455541 - 2455513 - R 71 -7.3 -4.05747 | opp_overlap 2455513 2455519, overlap 2455522 TATAGTTGAGATAAA CCGAAACACCCGC ATC GCGGAAGTTCTGG TTATAAGTGGCGGTG TERM 3024 2456313 - 2456323 + r 74 -6.8 -4.32034 | TAATCCTCGCCCAGC GCCA GTT TGGC TTTTAATGATGGTAA TERM 3025 2456854 - 2456866 + r 72 -4.7 -4.56702 | AAATATCGTACTCTT CCGCC AAT GGCTG TTTATTTAGTTGAAC TERM 3026 2457158 - 2457131 - R 93 -12 -3.80569 | opp_overlap 2457131, overlap 2457132 CAAAATACATTTAAA TCCCCCATAGCA GTGT CGCTATGGGGGT ATGCCTTACAGGTAA TERM 3027 2457157 - 2457132 - R 93 -15.5 -2.87257 | opp_overlap 2457131, overlap 2457131 AAAATACATTTAAAT CCCCCATAGCA GTGT CGCTATGGGGG TATGCCTTACAGGTA SFV_2407 2457727 - 2457164 - | putative fimbrial-like protein TERM 3028 2457652 - 2457708 + g 77 -8.8 -4.09739 | overlap 2457640 TACCGTTGTTACCCG CAGCGATTGTTGCCGTAGAGGTGA ACACGCCCA TCACCATTGCCGCAGCAATAGCTG TTTTAACAAACTTAC TERM 3029 2458399 - 2458367 - R 90 -14.4 -3.27298 | opp_overlap 2458367 CTGCCTAATGAGCAA TTATGCCCAATGAA TCTAC CTCATTGGGCATAA TTTGGAACACATCAG TERM 3030 2458367 - 2458399 + r 93 -13.7 -3.53811 | opp_overlap 2458367 CTGCCTAATGAGCAA TTATGCCCAATGA ATCTACC TCATTGGGCATAA TTTGGAACACATCAG SFV_2408 2458896 - 2458411 - | phosphohistidine phosphatase fadJ 2461243 - 2459099 - | multifunctional fatty acid oxidation complex subunit alpha TERM 3031 2459446 - 2459458 + g 100 -4.8 -5.46698 | overlap 2459407 TGAGCGGGTAAATGG CAGG ATCGA CCTG TTTTTTGCTTTTACG TERM 3032 2459792 - 2459804 + g 70 -6.9 -4.13963 | opp_overlap 2459792 2459791, overlap 2459781 GTCACGCACGACAAT GGGCG TTT TGCCC TGTTTTTTCGCCAGT fadI 2462553 - 2461243 - | 3-ketoacyl-CoA thiolase TERM 3033 2462715 - 2462689 - R 100 -20.2 -5.3689 | AGAAAGAAAAGAAAA CGCCCCTGCCAG CAA CTGACAGGGGCG TACGTACCCGAGAGG SFV_2411 2463017 - 2462733 - | hypothetical protein fadL 2463383 - 2464729 + | long-chain fatty acid outer membrane transporter TERM 3034 2464771 - 2464751 - f 100 -15.5 -3.85698 | opp_overlap 2464751 GTTCGCCTGGATAAA GTCACCTGC TAT GCAGGTGAC TTTAACTCCCCCACT TERM 3035 2464751 - 2464771 + F 100 -15.5 -3.64822 | opp_overlap 2464751 GTTCGCCTGGATAAA GTCACCTGC TAT GCAGGTGAC TTTAACTCCCCCACT SFV_2413 2465095 - 2466153 + | hypothetical protein TERM 3036 2466329 - 2466290 - T 77 -10.3 -3.3785 | opp_overlap 2466300, overlap 2466300 GTAATTGAGGGATAA CAACAAAAAAGGTGAGT TTTGCG ACTCACCTTTTTTATTT GTTTCTTATTCAGAA TERM 3037 2466319 - 2466300 - T 100 -7.9 -5.68489 | opp_overlap 2466300, overlap 2466290 GATAACAACAAAAAA GGTGAGT TTTGCG ACTCACC TTTTTTATTTGTTTC TERM 3038 2466300 - 2466319 + T 100 -8.6 -5.85425 | opp_overlap 2466300 2466290 GATAACAACAAAAAA GGTGAGTT TTGC GACTCACC TTTTTTATTTGTTTC vacJ 2467090 - 2466335 - | lipoprotein precursor yfdC 2467384 - 2468316 + | putative transport protein TERM 3039 2468612 - 2468590 - f 93 -10 -4.60487 | CATGACGGGTAAAAA GTGGATAAAA TAA TTTTACCCAC CGGATTTTTACCCAT SFV_2417 2468626 - 2469120 + | putative integrase SFV_2418 2469661 - 2469095 - | IS911 ORF2 TERM 3040 2469503 - 2469514 + g 77 -5.8 -4.63218 | opp_overlap 2469499 CGAGAACGACATGGC CCAG CCCA CTGG TTTTCTTGCGAACAG SFV_2419 2470264 - 2469962 - | IS911 ORF1 SFV_2420 2471403 - 2470534 - | aminoimidazole riboside kinase TERM 3041 2471447 - 2471475 + r 82 -7.4 -4.59109 | overlap 2471449 CATACTTTGGCTGTA ATGCCAGTCAGT AAGCA ACTGACTGGCTC TTTTTCGGGGCTGTG TERM 3042 2471449 - 2471473 + r 100 -14.4 -3.90762 | overlap 2471447 TACTTTGGCTGTAAT GCCAGTCAGT AAGCA ACTGACTGGC TCTTTTTCGGGGCTG SFV_2421 2472803 - 2471454 - | IS4 orf TERM 3043 2472821 - 2472790 - G 100 -13.9 -4.4017 | opp_overlap 2472793 CCAATGTGCATAAAA GAATCCGGAAACA AGTGAG CGTTTCCGGATTC TTACACAGCCACTGG TERM 3044 2472793 - 2472818 + g 73 -9.1 -3.61398 | opp_overlap 2472790 ATGTGCATAAAAGAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 3045 2473006 - 2473021 + H 71 -7.6 -3.87815 | GTTAACGTTAACATT TGCGAT ATTC ATCGCA TTTATGAAAGTAAGG SFV_2422 2473101 - 2474534 + | hypothetical protein SFV_2423 2475495 - 2474542 - | sucrose specific repressor SFV_2424 2475768 - 2475986 + | D-serine permease TERM 3046 2476392 - 2476358 - g 70 -5.6 -4.36914 | opp_overlap 2476359 TCCGGCTCTATAAAA GCACGCGGCGGGATTT ATG AAGTCCTGGCACATGC AGAAAAACTGGCTCT dsdA 2476004 - 2477332 + | D-serine dehydratase emrY 2478978 - 2477440 - | multidrug resistance protein Y TERM 3047 2478549 - 2478560 + g 82 -2.2 -5.31877 | TTGACCATAATGCCA GAGC AAAT GTTC TTTTTTCTGGTGGAT emrK 2480141 - 2478978 - | multidrug resistance protein K TERM 3048 2479633 - 2479649 + g 81 -10.1 -3.89131 | TTATAAGCCTGGATA GCGGCAT TCA GTGCCGC TTTGCTACTTATTAA TERM 3049 2479763 - 2479790 + g 83 -10 -4.1337 | gap 1, opp_overlap 2479763, overlap 2479766 ATTGTTGATACTGAA TAC-GTGCTGAAG CGA CTTCGGCACTGTA TTGTTTATCCTGTAA TERM 3050 2479766 - 2479786 + g 80 -11.9 -3.39301 | opp_overlap 2479763, overlap 2479763 GTTGATACTGAATAC GTGCTGAAG CGA CTTCGGCAC TGTATTGTTTATCCT evgA 2480558 - 2481172 + | DNA-binding transcriptional activator EvgA TERM 3051 2481476 - 2481451 - g 75 -5.5 -4.60924 | overlap 2481440 TAAATCTTTTAAAAA GAGCGTTAAAT ATCA AATTAACACTC CGGGAATACGCAGAT TERM 3052 2482414 - 2482395 - g 100 -4.3 -5.66989 | opp_overlap 2482395 CAAACATTAAAAAAA GGAATGA AAGTTG CCATTCC ATATTATTATGAGCT TERM 3053 2483326 - 2483314 - g 71 -3.3 -4.7373 | CTACCGTAGCAAAAA GTCAG TTT CTGGC AACGATGAGTCACGA evgS 2481177 - 2484770 + | hybrid sensory histidine kinase in two-component regulatory system with EvgA TERM 3054 2484777 - 2484803 + T 82 -11.6 -3.34517 | opp_overlap 2484772, overlap 2484772 2484775 AATGACTAAATTGCG GCTCCCACAATG TTC TAATGTGGGAGC TATTTACCAGCACAT yfdE 2486010 - 2484826 - | hypothetical protein TERM 3055 2484899 - 2484914 + g 75 -4.6 -4.87786 | opp_overlap 2484893, overlap 2484870 GGCATAACATGCGGG TCCGCG CAGC CGCTGA TTTTTATCGGATTAC TERM 3056 2486016 - 2485992 - G 83 -6.5 -5.0133 | gap 1, opp_overlap 2485991 2485992 TATGCCTTGAAAAAA GCCGAAG-GT GAAAAG ACACTTCGGC ATTTATGTAAAATCA SFV_2431 2486989 - 2486045 - | putative transporter YfdV SFV_2432 2488753 - 2487059 - | putative oxalyl-CoA decarboxylase TERM 3057 2487650 - 2487667 + g 73 -3.5 -4.79667 | AAAGTAATTTAATGG TTGAGTA TCTG TACTTAA TTTTTCATGCATTTT TERM 3058 2488082 - 2488055 - G 76 -7.9 -4.1711 | gap 1, opp_overlap 2488063 AGCACTTTCAATAAA TTCACGAAGCTG TTCAT CAGCTT-GTGAA TACGCCGCGCCTTTG TERM 3059 2488575 - 2488560 - G 77 -6.1 -4.63218 | overlap 2488561 2488562 TTTTGGGTAAGAAAA CCGCT TGCCGC AGCGG CATAGCCTGCCGACT SFV_2433 2490057 - 2488807 - | formyl-coenzyme A transferase TERM 3060 2489899 - 2489951 + g 70 -6.2 -4.26903 | opp_overlap 2489904 2489906, overlap 2489900 2489904 AAGCGCATCGATATC AGGAATATCTCGCAGTTGGTGACG CGTTA CGTCACCAACGCCGGGACGTTCAA TTTTAATAACGTCAG TERM 3061 2489900 - 2489950 + g 70 -9.7 -3.1582 | opp_overlap 2489904 2489906, overlap 2489899 2489904 AGCGCATCGATATCA GGAATATCTCGCAGTTGGTGACG CGTTA CGTCACCAACGCCGGGACGTTCA ATTTTAATAACGTCA TERM 3062 2489944 - 2489906 - G 81 -12.4 -3.18849 | opp_overlap 2489904 2489900 2489899, overlap 2489904 TCGATATCAGGAATA TCTCGCAGTTGGTGACGC GTT ACGTCACCAACGCCGGGA CGTTCAATTTTAATA TERM 3063 2490515 - 2490479 - R 95 -11.9 -3.92542 | opp_overlap 2490478 2490477 GCGAGCGCCAAATAA TTTTATGACCACAAC CTGTCGT ATTGTGGTCATAAAA AATTGTCGGCTGGAG SFV_2434 2491193 - 2490570 - | hypothetical protein TERM 3064 2491621 - 2491611 - R 82 -5.4 -5.15381 | AAGAGACTGAAAAAA CATC AGC GATG ACGACCACACACTCT SFV_2435 2492084 - 2491842 - | hypothetical protein ddg 2492437 - 2493357 + | lipid A biosynthesis palmitoleoyl acyltransferase TERM 3065 2493391 - 2493418 + T 88 -5.6 -5.52096 | TCCCTCCTCAAATCG GCCATAATAACC TCAT GATTTTTATGGC TTTTTTCTTAAGTTT TERM 3066 2493825 - 2493806 - T 100 -13.6 -4.8622 | opp_overlap 2493806 CTGTGCAATGAAAAA CAGGAGCC ATCA GGCTCCTG TTTGCATTTCTGACG TERM 3067 2493806 - 2493825 + T 100 -13.6 -3.89215 | opp_overlap 2493806 CTGTGCAATGAAAAA CAGGAGCC ATCA GGCTCCTG TTTGCATTTCTGACG SFV_2437 2495002 - 2493848 - | aminotransferase TERM 3068 2495131 - 2495148 + H 71 -6.9 -4.11394 | overlap 2495133 2495144 ACCGTCCGAGCGACG CTGCCAC AATG GTGGCTG TTTTGAAAATAGCCT TERM 3069 2496120 - 2496099 - g 81 -6.7 -4.7078 | TGAATTACGGAAAAA TCATCATTA AAAA CAATGATGA AGCCCACCGCACACC SFV_2438 2495828 - 2496949 + | putative sensor protein SFV_2439 2496964 - 2497698 + | putative 2-component transcriptional regulator TERM 3070 2498199 - 2498249 + G 72 -4.7 -4.60797 | gap 1, opp_overlap 2498239, overlap 2498201 AAGTTTGCTGCATCT TTGCCGCAACGTGGTGAATATGCC GCCG GGTA-ATTCACAACCGCGCGGCGA TTTTCTCTATCACAG SFV_2440 2497711 - 2498568 + | putative ARAC-type regulatory protein SFV_2441 2501066 - 2498571 - | putative PTS system enzyme IIA component, enzyme I TERM 3071 2499424 - 2499400 - G 78 -8.5 -4.23213 | opp_overlap 2499400 CCGATACTGAAGAAA TCGACCTCATC GCA GAAGTGGTCGA TGATGTAGCACACCG TERM 3072 2499952 - 2499986 + g 75 -5.1 -4.72486 | gap 2, opp_overlap 2499957, overlap 2499955 2499957 2499965 CGCTTGTTATCACGG GAATAGGC-CA-GCTGC GCG GCAGCCTGCGCCTGTTG TTTTTGGCGTTTATC TERM 3073 2499955 - 2499983 + g 77 -6.8 -4.45259 | gap 2, opp_overlap 2499957, overlap 2499952 2499957 2499965 TTGTTATCACGGGAA TAGGC-CA-GCTGC GCG GCAGCCTGCGCCTG TTGTTTTTGGCGTTT SFV_2442 2502128 - 2501091 - | exoaminopeptidase TERM 3074 2501204 - 2501174 - G 77 -8.4 -4.11216 | gap 2 GCTCCATCTGCAAAA TGTCGCGGCAATCG GCAAT CGAT-GCCGCG-CA ATGTCCGTGGCGGGT TERM 3075 2502430 - 2502388 - R 81 -13.2 -2.71144 | CAGCCTCGGTAATGA CCCGGCGCGCGGCGTCGTCA ATC TGCTGGCAGCGCACGCCGGG GCGAATTGCAGAGAT TERM 3076 2502610 - 2502661 + r 71 -10.8 -2.62184 | gap 1, overlap 2502594 CCCGCTGCAACAATC TTGTCGCTGGC-TTTGCCGTGCGGC AGC GCCCCGCGCCAGCCGCTGGCGACAA TGGTGTCAAAAGAAG SFV_2444 2504473 - 2503226 - | putative transport protein TERM 3077 2503901 - 2503927 + g 76 -12.4 -2.54732 | opp_overlap 2503903 2503908, overlap 2503900 2503903 2503908 GGTTTTGAACGCTAA CAGGAAATCCGG TAA CTGGATTTTCTG GTTCATCCATTTCAC TERM 3078 2503908 - 2503920 + g 72 -5.5 -4.56607 | opp_overlap 2503903 2503908, overlap 2503903 2503901 2503900 AACGCTAACAGGAAA TCCGG TAA CTGGA TTTTCTGGTTCATCC SFV_2445 2504821 - 2504495 - | putative PTS system enzyme IIB component TERM 3079 2505027 - 2505002 - R 72 -8.3 -3.70674 | overlap 2505000 2505003 2505005 GTATGATTTAAAAGA TTATCGGGAGA GTTA CCTCCCGATAT AACAGGAAGGATTTA TERM 3080 2505026 - 2505003 - R 77 -11.8 -2.81922 | overlap 2505002 2505000 2505005 TATGATTTAAAAGAT TATCGGGAGA GTTA CCTCCCGATA TAACAGGAAGGATTT TERM 3081 2505024 - 2505005 - R 70 -10 -2.95081 | overlap 2505003 2505002 2505000 TGATTTAAAAGATTA TCGGGAGA GTTA CCTCCCGA TATAACAGGAAGGAT glk 2506005 - 2505040 - | glucokinase SFV_2447 2506209 - 2507465 + | hypothetical protein SFV_2448 2507580 - 2507906 + | hypothetical protein TERM 3082 2507963 - 2507930 - T 73 -9.5 -3.44319 | opp_overlap 2507940, overlap 2507931 TCCAATGGAGCACAA TGCCTGATGCGACGC TAGC GCGTCTTATCAGGCC TACAAACCGGCTCTT TERM 3083 2507962 - 2507931 - T 81 -13 -2.6627 | opp_overlap 2507940, overlap 2507930 CCAATGGAGCACAAT GCCTGATGCGACGC TAGC GCGTCTTATCAGGC CTACAAACCGGCTCT SFV_2449 2509285 - 2508047 - | manganese transport protein MntH TERM 3084 2509316 - 2509301 - H 73 -7.6 -4.07568 | opp_overlap 2509301 2509296 CTTGTGCCTCTAAAA CATAGC CTTT GCTATG TTTCATGCTATGCTA TERM 3085 2510214 - 2510235 + G 70 -7.3 -4.00782 | CGTCGTTGCTGCGCT GGTACTGAA CATG TTCAGCACC TTTATCGTGCTGTCG nupC 2509621 - 2510823 + | permease of transport system for 3 nucleosides TERM 3086 2510873 - 2510826 - T 100 -17.2 -4.07687 | opp_overlap 2510827 2510840, overlap 2510827 2510829 2510840 ACTGGTGCTGTAAAA TCATACATAAAAAAGCCGGGGA TCAT TCCCCGGCTTTTTTACGCCTGT TAATCAGCTAATGGC TERM 3087 2510872 - 2510827 - T 100 -20.7 -3.04398 | opp_overlap 2510827 2510840, overlap 2510826 2510829 2510840 CTGGTGCTGTAAAAT CATACATAAAAAAGCCGGGGA TCAT TCCCCGGCTTTTTTACGCCTG TTAATCAGCTAATGG TERM 3088 2510827 - 2510872 + T 100 -16.3 -3.17212 | opp_overlap 2510826 2510827 2510829 2510840, overlap 2510840 CTGGTGCTGTAAAAT CATACATAAAAAAGCCGGGGA TCAT TCCCCGGCTTTTTTACGCCTG TTAATCAGCTAATGG TERM 3089 2510870 - 2510829 - T 100 -17.5 -3.08032 | opp_overlap 2510827 2510840, overlap 2510827 2510826 2510840 GGTGCTGTAAAATCA TACATAAAAAAGCCGGGGA TCAT TCCCCGGCTTTTTTACGCC TGTTAATCAGCTAAT TERM 3090 2510859 - 2510840 - T 100 -15 -5.43414 | opp_overlap 2510840 2510827, overlap 2510829 2510827 2510826 ATCATACATAAAAAA GCCGGGGA TCAT TCCCCGGC TTTTTTACGCCTGTT TERM 3091 2510840 - 2510859 + T 100 -15 -5.04987 | opp_overlap 2510829 2510827 2510826 2510840, overlap 2510827 ATCATACATAAAAAA GCCGGGGA TCAT TCCCCGGC TTTTTTACGCCTGTT yfeA 2513062 - 2510873 - | hypothetical protein TERM 3092 2512343 - 2512327 - G 81 -6.5 -4.74215 | AGATGATGAAGAAAA CGGGTAC CAG GTAACCG GCAATAAAGTCGTTT TERM 3093 2513260 - 2513241 - H 100 -11.4 -5.43414 | AGCAGAGACAAAAAA CCCCCGCT TTGC AGCGAGGG TTGGAAATTTGGTGG TERM 3094 2513686 - 2513674 - g 82 -9.1 -4.28762 | overlap 2513664 ACAACGTCACCAAAA CCTGG CGT CCAGG GTGGCAAAGCCCGAC yfeC 2513581 - 2513925 + | hypothetical protein TERM 3095 2514052 - 2514038 - g 71 -2.8 -4.87318 | overlap 2514030 TGGAAAACGGAAAAA TTTCCC GGC GTGAAA GGCGGTCGTGCCAGA yfeD 2513927 - 2514325 + | hypothetical protein TERM 3096 2514328 - 2514362 + T 84 -8.6 -4.58663 | opp_overlap 2514334, overlap 2514334 CGAATCAGCATAAAT AAAAAACGGCAGGATA TTA TCTCCTGCCGTTTATC TTTTTACACGCTAAT TERM 3097 2514334 - 2514356 + T 100 -12 -4.55887 | opp_overlap 2514334, overlap 2514328 AGCATAAATAAAAAA CGGCAGGATA TTA TCTCCTGCCG TTTATCTTTTTACAC TERM 3098 2514356 - 2514334 - T 100 -12 -5.73978 | opp_overlap 2514334 2514328 AGCATAAATAAAAAA CGGCAGGATA TTA TCTCCTGCCG TTTATCTTTTTACAC gltX 2515792 - 2514377 - | glutamyl-tRNA synthetase TERM 3099 2516359 - 2516327 - H 71 -9.9 -3.19463 | opp_overlap 2516328 2516336, overlap 2516328 2516336 TGCACGACCCACCAA TGTAAAAAAGCGCCC TAA AGGCGCTTTTTTGCT ATCTGCGATACTCAA TERM 3100 2516358 - 2516328 - H 80 -13.4 -2.51464 | opp_overlap 2516328 2516336, overlap 2516327 2516336 GCACGACCCACCAAT GTAAAAAAGCGCCC TAA AGGCGCTTTTTTGC TATCTGCGATACTCA TERM 3101 2516328 - 2516358 + H 87 -14.9 -2.90212 | opp_overlap 2516327 2516328 2516336, overlap 2516336 GCACGACCCACCAAT GTAAAAAAGCGCC CTAAA GGCGCTTTTTTGC TATCTGCGATACTCA TERM 3102 2516350 - 2516336 - H 100 -9.2 -5.17576 | opp_overlap 2516336 2516328, overlap 2516328 2516327 CACCAATGTAAAAAA GCGCCC TAA AGGCGC TTTTTTGCTATCTGC TERM 3103 2516336 - 2516350 + H 100 -8.5 -5.24989 | opp_overlap 2516328 2516327 2516336, overlap 2516328 CACCAATGTAAAAAA GCGCC CTAAA GGCGC TTTTTTGCTATCTGC TERM 3104 2516443 - 2516419 - H 74 -8.6 -3.96483 | gap 2 AGCGCAGCGAAACAA CGGAGCCGCTCG CGG CGA-CGGC-CCG AAGGGCGAGCGAAGC TERM 3105 2516515 - 2516483 - H 100 -15.7 -3.19463 | opp_overlap 2516484 2516492, overlap 2516484 2516492 TGCACGACCCACCAA TGCAAAAAAGCGCCC TAA AGGCGCTTTTTTGCT ATCTGCGATTTGTAA TERM 3106 2516484 - 2516514 + H 100 -18.5 -2.94194 | opp_overlap 2516483 2516484 2516492, overlap 2516492 GCACGACCCACCAAT GCAAAAAAGCGCC CTAAA GGCGCTTTTTTGC TATCTGCGATTTGTA TERM 3107 2516514 - 2516484 - H 100 -19.2 -2.51464 | opp_overlap 2516484 2516492, overlap 2516483 2516492 GCACGACCCACCAAT GCAAAAAAGCGCCC TAA AGGCGCTTTTTTGC TATCTGCGATTTGTA TERM 3108 2516506 - 2516492 - H 100 -9.2 -5.17576 | opp_overlap 2516492 2516484, overlap 2516484 2516483 CACCAATGCAAAAAA GCGCCC TAA AGGCGC TTTTTTGCTATCTGC TERM 3109 2516492 - 2516506 + H 100 -8.5 -5.24989 | opp_overlap 2516484 2516483 2516492, overlap 2516484 CACCAATGCAAAAAA GCGCC CTAAA GGCGC TTTTTTGCTATCTGC flxA 2516601 - 2516942 + | hypothetical protein TERM 3110 2516928 - 2516917 - T 70 -2.2 -5.00884 | ATCCTGTTGAAAAAA CGAC TCAT ATCG ATATCTATATCTGAT yfeR 2517859 - 2516933 - | LysR family transcriptional regulator TERM 3111 2518167 - 2518182 + G 73 -9 -3.69621 | TTTGTGGGTAATGTG CAGCAC CTTC GTGCTG TTTCCGATTCTGGGT yfeH 2517949 - 2518947 + | putative cytochrome oxidase ypeB 2519162 - 2518944 - | putative cytoplasmic protein ligA 2521179 - 2519164 - | NAD-dependent DNA ligase LigA TERM 3112 2521218 - 2521202 - R 93 -10.8 -4.67904 | CATCAATGCTAAAAA CCCCCG ACAAG CGGGGG TTCGAAGAGGAGTTA zipA 2522275 - 2521250 - | cell division protein ZipA TERM 3113 2522337 - 2522371 + H 72 -2.8 -5.02476 | CACTATTAACTTTCA CAGCACAAAGATAGAT GAA ATCGTGCTTTTTGCTG TTTTTTCGAACATAT TERM 3114 2522490 - 2522500 + G 71 -2.4 -4.98616 | TCATTCACATCTGCC CCAC GCA GCGG TTTTTACTATTTTGC TERM 3115 2522769 - 2522779 + G 72 -6.8 -4.20516 | AACTGGATTGCCGCT CCGT TTA ACGG TTTATTGGCTGAACA cysZ 2522466 - 2523227 + | putative sulfate transport protein CysZ TERM 3116 2523267 - 2523286 + F 93 -12.8 -3.7347 | opp_overlap 2523265 2523267 CGTTTGTGTGAAACA GGGGTGGC TTAT GCCGCCCC TTATTCCATCTTGCA TERM 3117 2523286 - 2523267 - f 77 -10.6 -3.34398 | opp_overlap 2523267, overlap 2523265 CGTTTGTGTGAAACA GGGGTGGC TTAT GCCGCCCC TTATTCCATCTTGCA TERM 3118 2523892 - 2523878 - g 82 -3.4 -5.19261 | overlap 2523879 AAATTCACGAAAAAA CCACCG GTC CGGAGA TCTGGGAAGATACCG cysK 2523412 - 2524383 + | cysteine synthase A TERM 3119 2524412 - 2524427 + F 100 -9 -5.26316 | opp_overlap 2524403 2524412 AAAATGCGTAAAAAA GCACCT TTTT AGGTGC TTTTTTGTGGCCTGC TERM 3120 2524427 - 2524412 - f 100 -9 -5.08011 | opp_overlap 2524412, overlap 2524403 AAAATGCGTAAAAAA GCACCT TTTT AGGTGC TTTTTTGTGGCCTGC ptsH 2524767 - 2525024 + | phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) TERM 3121 2525386 - 2525357 - g 72 -6.5 -4.36903 | gap 1, opp_overlap 2525357 2525357, overlap 2525359 CTGATTAAAGATAAA CACATGA-CAGCTG ACG CAGCTGCTCATGAA GTTATCGAAGGTCAG TERM 3122 2525384 - 2525359 - g 88 -11.3 -3.78193 | gap 1, opp_overlap 2525357 2525357, overlap 2525357 GATTAAAGATAAACA CATGA-CAGCTG ACG CAGCTGCTCATG AAGTTATCGAAGGTC ptsI 2525069 - 2526796 + | phosphoenolpyruvate-protein phosphotransferase crr 2526837 - 2527346 + | glucose-specific PTS system component TERM 3123 2527359 - 2527390 + T 95 -16.8 -2.70932 | opp_overlap 2527366, overlap 2527366 2527388 TAATTCTTGCCGCAG TGAAAAATGGCGCC CATC GGCGCCATTTTTTA TGCTTCCGCCAGCGG TERM 3124 2527383 - 2527366 - T 100 -12.7 -4.65895 | opp_overlap 2527366 2527359 TGCCGCAGTGAAAAA TGGCGCC CATC GGCGCCA TTTTTTATGCTTCCG TERM 3125 2527366 - 2527383 + T 100 -12.7 -5.37345 | opp_overlap 2527366, overlap 2527359 TGCCGCAGTGAAAAA TGGCGCC CATC GGCGCCA TTTTTTATGCTTCCG pdxK 2528239 - 2527388 - | pyridoxal kinase TERM 3126 2527679 - 2527692 + g 77 -6.7 -4.56597 | CACCCATTTTAATGT GTCTG AAAG CAGAC TTTTTGCGGCAGCAA TERM 3127 2528561 - 2528571 + G 72 -6.8 -4.25056 | GTAACCGCATTGACA CTGC CGA GCAG TTTATTGATAAGGTA yfeK 2528344 - 2528718 + | hypothetical protein SFV_2472 2528751 - 2529158 + | hypothetical protein SFV_2473 2529127 - 2529474 + | hypothetical protein TERM 3128 2529477 - 2529515 + T 82 -11.2 -3.62046 | gap 1, opp_overlap 2529478, overlap 2529478 ACACGAAAATTAAAA ACTGCATTTGTCGGCAG CAACAA CTGCCGACAAAT-CAGA TTATTGACAAAGTGC TERM 3129 2529514 - 2529478 - T 100 -15.4 -5.1166 | gap 1, opp_overlap 2529478 2529477 CACGAAAATTAAAAA CTGCATTTGTCGGCAGC AACA ACTGCCGACAAAT-CAG ATTATTGACAAAGTG TERM 3130 2529478 - 2529514 + T 87 -14.7 -2.77013 | gap 1, opp_overlap 2529478, overlap 2529477 CACGAAAATTAAAAA CTGCATTTGTCGGCAG CAACAA CTGCCGACAAAT-CAG ATTATTGACAAAGTG TERM 3131 2529585 - 2529528 - T 75 -11.3 -2.96164 | opp_overlap 2529523 2529533 2529535, overlap 2529527 AGATTATTGACAAAG TGCACTTTGTTTATGCCGGATGCGGCG TAAA CGCCTGATCCGGCATAAAAATATTGCT AATTCAATATATTGC TERM 3132 2529533 - 2529580 + T 81 -12.8 -3.28537 | opp_overlap 2529527 2529528, overlap 2529523 2529535 ATTGACAAAGTGCAC TTTGTTTATGCCGGATGCGGCG TAAA CGCCTGATCCGGCATAAAAATA TTGCTAATTCAATAT TERM 3133 2529535 - 2529578 + T 100 -15.4 -3.20494 | opp_overlap 2529527 2529528, overlap 2529523 2529533 TGACAAAGTGCACTT TGTTTATGCCGGATGCGGCG TAAA CGCCTGATCCGGCATAAAAA TATTGCTAATTCAAT cysM 2530667 - 2529678 - | cysteine synthase B TERM 3134 2530701 - 2530674 - R 89 -9.1 -4.72272 | gap 1, opp_overlap 2530674 2530691 CCTTGCCATTAAAAA GCCCGGA-TCGC GGGAA GCGCCTCCGGGC GTTTAACATTCACTC cysA 2531820 - 2530723 - | sulfate/thiosulfate transporter subunit cysW 2532685 - 2531810 - | sulfate/thiosulfate transporter permease subunit cysU 2533518 - 2532685 - | sulfate/thiosulfate transporter subunit cysP 2534534 - 2533518 - | thiosulfate transporter subunit TERM 3135 2534825 - 2534802 - R 87 -11 -3.93038 | TAGTTCAAGACGAAA TCCTCCCCAC ACAT GCAGGGAGGA AACAGAGGTGAATCA ucpA 2535629 - 2534838 - | short chain dehydrogenase yfeT 2536616 - 2535816 - | hypothetical protein TERM 3136 2537644 - 2537626 - g 79 -2.4 -5.1925 | gap 1 GCAGAAGCTAAAAAA CGCC-TG GATCAA CACGGCG GCTTTATTCGTCAGG murQ 2536780 - 2537676 + | N-acetylmuramic acid-6-phosphate etherase TERM 3137 2537859 - 2537875 + G 75 -5.1 -4.60487 | overlap 2537853 CGTCATTTTGACCAG CGACC AAGTGCA GGTCG TTTTTGGGCCTGGTA murP 2537680 - 2539104 + | N-acetylmuramic acid phosphotransfer permease TERM 3138 2539233 - 2539260 + T 100 -14.2 -3.767 | opp_overlap 2539233 AAGCAGTAATAAAAA GGCCAGTCAGTA ATGT TACTGCCTGGCC TTTAATCAATGAATC TERM 3139 2539260 - 2539233 - T 100 -14.2 -5.16071 | opp_overlap 2539233 AAGCAGTAATAAAAA GGCCAGTCAGTA ATGT TACTGCCTGGCC TTTAATCAATGAATC TERM 3140 2539291 - 2539281 - T 71 -6.8 -4.10331 | TCAATGAATCAGAAA CGCT TAC AGCG CCATCAACTTGTCCA SFV_2483 2540183 - 2539284 - | hypothetical protein TERM 3141 2539330 - 2539340 + g 72 -8.2 -3.72576 | GCGAAATAATAGCCG CCGG TTA CCGG TTTGGTGAAACGCAA TERM 3142 2539718 - 2539743 + g 74 -6 -4.54047 | opp_overlap 2539710 2539709, overlap 2539709 2539720 TGATAACCGCCACTT CGCGGCGCGT CTCTTC ACCCGCCGGG TTTTCTGTACCGTCA TERM 3143 2540223 - 2540205 - R 90 -10.3 -4.20868 | opp_overlap 2540205 TCCTGAAAATAAGAA TGCCACG CAATC CGTGGCA TTGTTGAGCGCTATT TERM 3144 2540205 - 2540223 + r 79 -10.3 -3.63341 | opp_overlap 2540205 TCCTGAAAATAAGAA TGCCACG CAATC CGTGGCA TTGTTGAGCGCTATT SFV_2484 2540854 - 2540279 - | hypothetical protein TERM 3145 2540626 - 2540606 - G 77 -3.1 -5.06451 | CATCACTTCAAAAAA GCGCACCAC GTT GCCGTTCGC GGTTTTCATTCCGCT SFV_2485 2541370 - 2540915 - | hypothetical protein TERM 3146 2541159 - 2541143 - G 74 -2.1 -5.06816 | overlap 2541144 2541145 ACCGCTCAACAAAAA CGCCAGC ACC GCCGGAA TACCGGGAATCAGCC SFV_2486 2541887 - 2541351 - | putative acetyltransferase TERM 3147 2542791 - 2542780 - g 72 -5.8 -4.36914 | opp_overlap 2542780, overlap 2542781 CGTTTCGTCAGAAAA TCGC CACA GCGA TTGCTGAAGGCGTGA amiA 2541990 - 2542859 + | N-acetylmuramoyl-l-alanine amidase I TERM 3148 2543087 - 2543133 + G 100 -17.5 -3.69323 | gap 2 GCCTGCTTCCGCCAC CGCTCATCGCC-CGGAACT-TGC CGG GCGCAGTTTCGAGGCGATGGGCG TTTCACTGGTAGTGC TERM 3149 2543180 - 2543191 + G 100 -3.6 -5.7946 | overlap 2543178 TGTTCCCACCAGCCA CGCG AATG TGCG TTTTTTTATTGCCGA TERM 3150 2543394 - 2543420 + G 84 -10.8 -3.81951 | opp_overlap 2543385 2543387 2543397, overlap 2543397 CTCAAACATCGCAAC GAACAGCGCGGC ATT GGCGGGCTGTTC TTTGATGATCTGAAC TERM 3151 2543397 - 2543417 + G 70 -6.7 -4.03811 | opp_overlap 2543385 2543387 2543397, overlap 2543394 AAACATCGCAACGAA CAGCGCGGC ATT GGCGGGCTG TTCTTTGATGATCTG hemF 2542863 - 2543762 + | coproporphyrinogen III oxidase yfeG 2544820 - 2543768 - | transcriptional regulator EutR TERM 3152 2544249 - 2544283 + g 70 -7.1 -4.02456 | gap 2, opp_overlap 2544269, overlap 2544277 2544279 TTCTCGCAAAACGTC GCCAGCGCCTGTTGGAC AAA GCCCCACAG-CGC-GGC TTTATGCTGCTCTTT SFV_2490 2545366 - 2544866 - | hypothetical protein TERM 3153 2544914 - 2544946 + g 70 -4.8 -4.56597 | overlap 2544916 TTTACGTAACGTCCC GGCAGAAAAGAGCT GTTCG AGCGCATTTCTGGC TTTTTCCAGCGGCCA SFV_2491 2546038 - 2545379 - | hypothetical protein TERM 3154 2546181 - 2546194 + H 100 -9.5 -5.21709 | opp_overlap 2546179 2546180 GCGGGTCAGCAAAGG GGGGC AAAT GCCCC TTTTTTCATGTCAGA TERM 3155 2546329 - 2546314 - H 74 -6.8 -4.32402 | overlap 2546326 CTGCAAGCAAAATAA GCCGCA AAAA TGCGAC CCCATGTTTACTAGC TERM 3156 2546488 - 2546465 - H 100 -7.4 -5.76949 | overlap 2546467 2546468 GACGCTGAAAAAAAA TAGGTGGGCA TTTT TGCCCACTCA CTAGCCGCAAATTTG TERM 3157 2546486 - 2546467 - H 79 -7.8 -4.52949 | overlap 2546465 2546468 CGCTGAAAAAAAATA GGTGGGCA TTTT TGCCCACT CACTAGCCGCAAATT TERM 3158 2546485 - 2546468 - H 79 -11.3 -3.30685 | overlap 2546467 2546465 GCTGAAAAAAAATAG GTGGGCA TTTT TGCCCAC TCACTAGCCGCAAAT SFV_2492 2547220 - 2547963 + | hypothetical protein insB 2548191 - 2548673 + | IS1 ORF2 TERM 3159 2548794 - 2548808 + F 100 -9.2 -5.14645 | opp_overlap 2548793 2548794 TGCAGTGAACACAAG CGGGCG CAA TGCCCG TTTTTATTGCCTTAT TERM 3160 2548978 - 2548962 - f 100 -7.2 -5.81412 | TGCACGCAAAAAAAA CCCGCC GGAGA AGCGGG AAATAGAGACATATC TERM 3161 2549570 - 2549580 + G 72 -4.6 -4.63048 | AGATGGATTTATGAC CCTG AAG CGGG TTTATTGTTTATCCG SFV_2494 2549507 - 2549761 + | hypothetical protein TERM 3162 2550123 - 2550151 + G 72 -6.7 -4.1721 | opp_overlap 2550122 2550111 2550123, overlap 2550111 GAAGGCACTGCAAAG CGGCGACTCATTT GCG AATTAAGTCGTCG TTTTGGCGTGTCAAT SFV_2495 2549919 - 2550182 + | hypothetical protein TERM 3163 2550483 - 2550469 - g 72 -7.8 -3.9534 | ATGGAGATGCACAAA CAGAGC GGT GCTCCG AATCCCGATGAGTAC SFV_2496 2550205 - 2550747 + | hypothetical protein TERM 3164 2550779 - 2550762 - f 100 -10.5 -4.77775 | opp_overlap 2550762 ATCGGATAAAAGAAA GCCGGGA ATTA CCCCGGC TGACTTAACAATGTG SFV_2497 2551212 - 2551418 + | hypothetical protein TERM 3165 2551782 - 2551793 + G 70 -5.8 -4.21322 | CAGTCGATATTCATA GCTC ACTT GAGC TTTCATTTATATTGC SFV_2498 2551730 - 2552215 + | hypothetical protein SFV_2499 2552467 - 2553927 + | putative amino acid antiporter SFV_2500 2554078 - 2554770 + | hypothetical protein TERM 3166 2554833 - 2554821 - T 73 -7.7 -4.14511 | AACTGCACCCCAAAA GTTGG ACA CCAAC TGAGTAAGGTGCATT TERM 3167 2554876 - 2554860 - T 71 -8 -3.92373 | CATTTTATGGACAAA CCCAGT TACAT ACTGGG TAGTGCATCCAATTA SFV_2501 2555284 - 2554889 - | iso-IS1 ORF2 TERM 3168 2555314 - 2555329 + r 70 -2.5 -5.0538 | overlap 2555302 2555315 CAGGCGAAGAAGTTA TTCGC TTTGGC GCGAG TTTTTTAAAGTCCGG SFV_2502 2556523 - 2555618 - | insertion element IS2 transposase InsD SFV_2503 2556846 - 2556481 - | insertion sequence 2 OrfA protein SFV_2504 2558812 - 2557439 - | reactivating factor for ethanolamine ammonia lyase TERM 3169 2558476 - 2558425 - GR 71 -7.8 -3.85698 | gap 1, opp_overlap 2558475, overlap 2558426 GCCGTTGTTCAGAAA GGGTTTGCGCCCCGGCTCCGTGACC GGC GATCACGGATTCGAGGTGCGG-CCC GGCGCTGGCGACGAC TERM 3170 2558475 - 2558509 + gr 76 -3.5 -4.90266 | gap 1, opp_overlap 2558425 2558426 2558496, overlap 2558477 2558496 GATTCGAGGTGCGGC CCGGCGCTG-GCGA CGACAAAA TCGCCCAGCGACTG TTTTTCCTTCATCAC TERM 3171 2558506 - 2558496 - GR 77 -6.8 -4.46212 | opp_overlap 2558477 2558475 2558496 CTGGCGACGACAAAA TCGC CCA GCGA CTGTTTTTCCTTCAT SFV_2505 2559266 - 2558787 - | hypothetical protein SFV_2506 2559686 - 2559279 - | hypothetical protein TERM 3172 2559449 - 2559463 + g 82 -11.4 -3.53761 | opp_overlap 2559448 2559445 TCAGCGCTAAATCAC CGGCGA TCA TCGCCG TTTCGCCGGGAGTTA TERM 3173 2559890 - 2559861 - R 100 -15.1 -4.27617 | opp_overlap 2559851, overlap 2559862 TATATTTCAGGAAAA CCGCTTACCCTGA ATAT TCAGGGTAAGCGT GAGAGTTAAGAATGA TERM 3174 2559889 - 2559862 - R 100 -18.6 -3.16088 | opp_overlap 2559851, overlap 2559861 ATATTTCAGGAAAAC CGCTTACCCTGA ATAT TCAGGGTAAGCG TGAGAGTTAAGAATG SFV_2507 2562186 - 2559907 - | malic enzyme TERM 3175 2560343 - 2560322 - G 70 -5.1 -4.4261 | gap 1, overlap 2560323 GGCTCAATACCAAAA CGACGGACAG TTT CTG-CCGCCA TCAAGGTGATCTCCG TERM 3176 2560980 - 2560959 - G 72 -10.1 -3.32769 | CGTCGAAATCAGCAA TCGGACGCG TCGC CACGCCCGA CTCCATCGCCGCTTT TERM 3177 2561625 - 2561635 + g 71 -3.2 -4.82901 | opp_overlap 2561614 AAACCACCATCCGCA CGTC GGA GATG TTTTTCTCCACCACG TERM 3178 2562250 - 2562222 - H 78 -6.1 -4.55697 | gap 1, opp_overlap 2562240 ACGTTCACAAATAAA GTGTGTGGGCAA CAGCCC CTGCCCACA-AC GTGGCGCACATTATT talA 2562475 - 2563425 + | transaldolase A TERM 3179 2563747 - 2563731 - g 74 -7.9 -4.13945 | AGTTGCATTCGAAAA CCCCAGG CCA CCCGGAG ATTGGCTATACGCCA tktB 2563445 - 2565448 + | transketolase SFV_2510 2566594 - 2565551 - | hypothetical protein TERM 3180 2566593 - 2566582 - G 77 -5.8 -4.6008 | AAAAGAGAAGGAAAA TGCG ATAG CGCA TGGACGGTACGACCC yffH 2567295 - 2566720 - | hypothetical protein TERM 3181 2567296 - 2567345 + r 79 -9.3 -4.03234 | overlap 2567297 GATTTGTTGCGTCAT ACCGACTCCACAGCGCGAAATGA ACAA TTATATTACGCTGTGAAGTCGGG TTTGTCTGCGCAGGC TERM 3182 2567297 - 2567344 + r 80 -12.8 -3.01726 | overlap 2567296 ATTTGTTGCGTCATA CCGACTCCACAGCGCGAAATGA ACAA TTATATTACGCTGTGAAGTCGG GTTTGTCTGCGCAGG yffG 2569342 - 2567363 - | putative oxidoreductase Fe-S binding subunit TERM 3183 2569566 - 2569589 + H 86 -5.2 -5.55698 | gap 1, opp_overlap 2569563, overlap 2569566 ATTGTTAAACGACCC GTCTC-GGCCA GTC TGGCCCGGGCC TTTTTTTACATTGTG TERM 3184 2569566 - 2569588 + H 71 -7.6 -3.91792 | opp_overlap 2569563, overlap 2569566 ATTGTTAAACGACCC GTCTCGGCCA GTC TGGCCCGGGC CTTTTTTTACATTGT TERM 3185 2570283 - 2570255 - H 78 -5.9 -4.81212 | opp_overlap 2570265 GTCAGTAGAAGAAAA GACCCGCGATCTC CAC GAGACCAAGCGTC GTCTGGAGGTGTTGT TERM 3186 2571526 - 2571545 + G 82 -2.8 -5.26875 | gap 1, overlap 2571528 2571529 GGCAATCCTGTTGTG TCTGACAGG TAC CCTGGC-GA TTTTTTCATTGCCCG TERM 3187 2572353 - 2572343 - g 70 -6.8 -4.07568 | GGGTTGGGGGTAAAA CTGG CCT CCAG CGCAAACGAAATGGC TERM 3188 2573461 - 2573444 - g 72 -6.9 -4.17906 | AACCAAATTAAAGAA GCTCGCG TTAT CGCCAGC AGCCCACCAGCAATT acrD 2571467 - 2574580 + | aminoglycoside/multidrug efflux system TERM 3189 2574620 - 2574585 - f 82 -11.4 -3.53444 | opp_overlap 2574592, overlap 2574592 GCCCGGAATAAGCAA TAAAAAAGGCGACA TGCCAATG TGTCGCCTTTTTCA ACTTTCCGATTAAGA TERM 3190 2574613 - 2574592 - f 91 -7.3 -5.57396 | opp_overlap 2574592, overlap 2574585 ATAAGCAATAAAAAA GGCGACA TGCCAATG TGTCGCC TTTTTCAACTTTCCG TERM 3191 2574592 - 2574613 + F 84 -8.7 -4.70879 | opp_overlap 2574592 2574585 ATAAGCAATAAAAAA GGCGACATG CCAA TGTGTCGCC TTTTTCAACTTTCCG TERM 3192 2574631 - 2574655 + F 74 -11.5 -2.79609 | opp_overlap 2574634 2574637, overlap 2574630 2574628 2574634 2574637 TTTCAACTTTCCGAT TAAGAACCTGC TCA GCGGGTTCTTG CTGTTTATACTTTGT TERM 3193 2574634 - 2574652 + F 82 -11 -3.52009 | opp_overlap 2574634 2574637, overlap 2574631 2574630 2574628 2574637 CAACTTTCCGATTAA GAACCTGC TCA GCGGGTTC TTGCTGTTTATACTT TERM 3194 2575368 - 2575336 - g 72 -4.8 -4.64676 | opp_overlap 2575343 CTACCCGCAATAAAA TCACCGATGCGGCC TCTGC GGCGGCATTAATGA CTGAAATGCCTGCAA yffB 2575119 - 2575475 + | hypothetical protein dapE 2575479 - 2576606 + | succinyl-diaminopimelate desuccinylase SFV_2517 2576610 - 2576834 + | hypothetical protein TERM 3195 2576916 - 2576864 - T 70 -10.6 -2.57931 | gap 1, opp_overlap 2576863 2576864 2576906, overlap 2576863 2576896 CGTAGGCCGGATAAG GCGTTAACGCCGCATCCGGCAATGG TGAA CGATC-CCTGATGCGACGCTCACGC GTCTTATCAGGCCAG ypfH 2577642 - 2576944 - | esterase YpfH ypfI 2579731 - 2577716 - | hypothetical protein TERM 3196 2577865 - 2577875 + g 79 -4.6 -4.96848 | opp_overlap 2577860 TGGTACATAACTGCG CGTC ACT GGCG TTTTTCTGTAAACGC TERM 3197 2579342 - 2579331 - G 72 -5.8 -4.38154 | AGATGCTGGACAAAA TGCG GCGT CGCA ATAGGGTCAGGGCAA SFV_2520 2580609 - 2579746 - | hypothetical protein TERM 3198 2580268 - 2580231 - G 72 -9.7 -3.30338 | opp_overlap 2580239 AGAACGGCCCCATAA TGGACTGGCCCGCCCCG CAGC CGGTGCGCGTCATTCCA CGGTACATGACCAGC purC 2581490 - 2580777 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 3199 2580841 - 2580877 + g 72 -5.7 -4.55295 | opp_overlap 2580854, overlap 2580843 ATCAGGCCACCGAGG CTCTGGCGGAAACGGTC TTT GTCCATTTTCTCCAGTG TTTCTTTGTCCCACA TERM 3200 2581672 - 2581699 + r 73 -4 -4.90266 | opp_overlap 2581676, overlap 2581674 2581676 CGTATCATATCAGAA AAAAGGGCCGGA TGAT TCCAGCCCTGTA TTTTTACTTGCTAAA TERM 3201 2581695 - 2581676 - R 100 -11.4 -5.34555 | opp_overlap 2581674 2581672 2581676 TCATATCAGAAAAAA GGGCCGGA TGAT TCCAGCCC TGTATTTTTACTTGC TERM 3202 2581676 - 2581695 + r 72 -9.2 -3.61182 | opp_overlap 2581676, overlap 2581674 2581672 TCATATCAGAAAAAA GGGCCGGA TGAT TCCAGCCC TGTATTTTTACTTGC nlpB 2582737 - 2581703 - | lipoprotein TERM 3203 2581877 - 2581895 + g 76 -11 -3.41878 | GCCCAGTTCCTGCCA GTCGCTGT CAG ACAGCGGC TTATAAGTTACGGCC TERM 3204 2582326 - 2582354 + g 77 -6 -4.62069 | opp_overlap 2582307, overlap 2582329 TGGTCAGTGTCTGAC CAGCATCATCAC GTTGG GTGATGGTGTAG TTTTTCGCCTGCAGC dapA 2583632 - 2582754 - | dihydrodipicolinate synthase gcvR 2583778 - 2584350 + | glycine cleavage system transcriptional repressor bcp 2584350 - 2584820 + | thioredoxin-dependent thiol peroxidase TERM 3205 2585631 - 2585619 - g 82 -2.6 -5.35815 | opp_overlap 2585622 CAGATGAAAGAAAAA CAGC GCCTT GCCG CAAGCTGGTTTGCCA TERM 3206 2585652 - 2585664 + G 73 -9.1 -3.6682 | TGGTTTGCCAATGGC GGGGA GTC TCCCC TTTCCCTCACTCAGG hyfA 2585073 - 2585690 + | hydrogenase 4 Fe-S subunit TERM 3207 2588308 - 2588320 + G 72 -7.7 -3.95022 | CTGCTTCATTGAGAT GGGAA AAA TTCCC TTTGATGTTGCTGAA TERM 3208 2588568 - 2588583 + G 79 -2.4 -5.2189 | opp_overlap 2588566 CAATCGCAGAAAACA CGCTGG CACG CGGGCG TTTTTTACTCATTCA hyfC 2587718 - 2588665 + | hydrogenase 4 membrane subunit TERM 3209 2589842 - 2589854 + G 73 -9.1 -3.69283 | AATTACCGGTGTGCC GCCGT TCA ACGGC TTCTTCAGTAAATTC hyfD 2588709 - 2590121 + | hydrogenase 4 subunit D hyfE 2590133 - 2590783 + | hydrogenase 4 membrane subunit TERM 3210 2591678 - 2591690 + G 95 -9.1 -4.94972 | CGGCATGTTGTCGGT TGCCG TGG CGGCA TTTTTCATTCTGGTA hyfF 2590788 - 2592380 + | hydrogenase 4 subunit F hyfH 2594094 - 2594639 + | hydrogenase 4 subunit H hyfI 2594636 - 2595394 + | hydrogenase 4 Fe-S subunit SFV_2535 2595324 - 2595800 + | putative protein processing element hyfR 2595896 - 2597842 + | putative 2-component regulator, interaction with sigma 54 TERM 3211 2597934 - 2597909 - T 93 -10.5 -4.38712 | gap 1 TTGAGCGCCAGAAAA GCGGCAAT-CGC TGA ACGGATTGCCGC CCATAAAATTGCCCG TERM 3212 2598714 - 2598749 + T 74 -8.2 -3.94877 | opp_overlap 2598717, overlap 2598715 GTCAGGAATCCTGAA AAATCAGCCCGGCGAA ACAG TTCGTCGGGCTGAAGA TTATTCTTGCGCGAT TERM 3213 2598715 - 2598748 + T 78 -11.7 -2.96444 | opp_overlap 2598717, overlap 2598714 TCAGGAATCCTGAAA AATCAGCCCGGCGAA ACAG TTCGTCGGGCTGAAG ATTATTCTTGCGCGA TERM 3214 2598746 - 2598717 - T 100 -16.5 -4.62872 | opp_overlap 2598715 2598714 AGGAATCCTGAAAAA TCAGCCCGGCGAA ACAG TTCGTCGGGCTGA AGATTATTCTTGCGC perM 2599811 - 2598750 - | putative permease SFV_2539 2600024 - 2601487 + | hypothetical protein SFV_2540 2601508 - 2601867 + | putative oxidoreductase SFV_2541 2602746 - 2602000 - | DNA replication initiation factor TERM 3215 2602756 - 2602798 + r 76 -7.7 -4.26393 | opp_overlap 2602752, overlap 2602762 TACCACAGAATCCCA TGATGTTTGAACCGGGCAG CAACA CTGCCCGGTCGGTACATTA TTTGTCTGTTATATC uraA 2604022 - 2602796 - | uracil transporter TERM 3216 2603166 - 2603140 - G 72 -8.6 -3.767 | overlap 2603155 TACCGACGCAGGAAA GCAGGATAGCGA AAA TCGCCGCCCCGC CGATAACCCAGGTAC TERM 3217 2603305 - 2603320 + g 79 -4 -5.04987 | gap 1 AACGGTGCAGACCTG GATC-GC GCA GCAGATC TTTTTTGACGATATT TERM 3218 2604126 - 2604160 + r 83 -4.3 -5.44198 | opp_overlap 2604134, overlap 2604129 2604134 ATAGGCGCTTTACTC AAAAAAAAGCCGACT CTTAA AGTCGGCTTTAATTA TTTTTATTCTTTATT TERM 3219 2604129 - 2604157 + r 78 -6 -4.74161 | opp_overlap 2604134, overlap 2604126 2604134 GGCGCTTTACTCAAA AAAAAGCCGACT CTTAA AGTCGGCTTTAA TTATTTTTATTCTTT TERM 3220 2604134 - 2604152 + r 90 -10.3 -4.2711 | opp_overlap 2604134, overlap 2604129 2604126 TTTACTCAAAAAAAA GCCGACT CTTAA AGTCGGC TTTAATTATTTTTAT TERM 3221 2604152 - 2604134 - R 100 -11 -5.81412 | opp_overlap 2604134 2604129 2604126 TTTACTCAAAAAAAA GCCGACTC TTA AAGTCGGC TTTAATTATTTTTAT upp 2604797 - 2604171 - | uracil phosphoribosyltransferase purM 2605121 - 2606158 + | phosphoribosylaminoimidazole synthetase TERM 3222 2606299 - 2606268 - g 100 -13.7 -3.72027 | opp_overlap 2606290 2606294, overlap 2606265 AGTTTTCAGCAATAA GGCCGACGCGTTC GGCCTT GAACGCGCCCGCC AGGCGGGTATTGCAA TERM 3223 2606294 - 2606306 + G 72 -10.5 -3.02144 | opp_overlap 2606268, overlap 2606290 TCGGCCTTGAACGCG CCCGC CAG GCGGG TATTGCAACGCATAC purN 2606158 - 2606796 + | phosphoribosylglycinamide formyltransferase TERM 3224 2606814 - 2606833 + F 100 -10.7 -4.74504 | opp_overlap 2606814 2606813 CCCCCGTAGTTAAAG CGCCAGC TCTGCC GCTGGCG TTTTTCAATTCACCT TERM 3225 2606833 - 2606814 - f 72 -10.7 -2.78679 | opp_overlap 2606814, overlap 2606813 CCCCCGTAGTTAAAG CGCCAGC TCTGCC GCTGGCG TTTTTCAATTCACCT TERM 3226 2608804 - 2608767 - g 70 -6.9 -4.10657 | overlap 2608768 TTATATTTTTGAAAA TGGCGGCGATAAAAAGG TCTA CCTTTCTTCCGCCGACT GGATGACGCGCAATA ppk 2606968 - 2609034 + | polyphosphate kinase TERM 3227 2609062 - 2609088 + F 74 -10.8 -3.23853 | overlap 2609060 ACACGATAAATCCCC TCGTCCGCAGGA GTT TGCTGCGGTCGA TCTTGGTTCAAACAG ppx 2609111 - 2610580 + | exopolyphosphatase TERM 3228 2610586 - 2610614 + F 100 -18.2 -3.6279 | CGCCGCTTAATGCTT TGCGGGCCGACG AGAAA TGTCGGCCCGCA TTATTCAGGCACTTT SFV_2548 2611794 - 2612096 + | IS600 ORF1 SFV_2549 2612237 - 2612950 + | IS600 ORF2 TERM 3229 2614013 - 2614002 - f 76 -2.2 -5.32599 | overlap 2613994 GATAAAAGAGAAAAA CCTC ACCG GAAG AAATATGCGCGAAAG SFV_2551 2614480 - 2614671 + | hypothetical protein SFV_2552 2614988 - 2615503 + | putative outer membrane lipoprotein SFV_2553 2615519 - 2616058 + | hypothetical protein TERM 3230 2616098 - 2616127 + T 73 -10.1 -3.41693 | opp_overlap 2616103, overlap 2616103 TGATTCTTGAAGATA AAAAACCCTCTGT AGTA ACGGAGGGTTTTG TTCATTCATAGTGCA TERM 3231 2616103 - 2616122 + T 100 -10 -4.80178 | opp_overlap 2616103, overlap 2616098 CTTGAAGATAAAAAA CCCTCTGT AGTA ACGGAGGG TTTTGTTCATTCATA TERM 3232 2616122 - 2616103 - T 100 -7.8 -5.47159 | opp_overlap 2616098 2616103 CTTGAAGATAAAAAA CCCTCTGT AGTA ACGGAGGG TTTTGTTCATTCATA guaA 2617730 - 2616153 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 3233 2617792 - 2617770 - R 91 -11.3 -4.33674 | AACAGATAATATAAA TCGCCCGAC ATGAA ATCGGGCGA AGAGAATCAGGAGCC guaB 2619271 - 2617799 - | inositol-5-monophosphate dehydrogenase TERM 3234 2618717 - 2618731 + g 73 -4.2 -4.79667 | overlap 2618728 GTCATCAACCACCAG CGCTTT TTC AACGCG TTTTTCGTGCATTTT xseA 2619427 - 2620797 + | exodeoxyribonuclease VII large subunit SFV_2557 2621045 - 2620794 - | hypothetical protein engA 2622551 - 2621079 - | GTP-binding protein EngA TERM 3235 2622649 - 2622618 - R 100 -13.8 -3.90048 | opp_overlap 2622624, overlap 2622619 2622624 TCGTTGTTAAAAACA GGAAAACGGCCCCT GTCC AGGAGCCGTTTTCA AAGTGAACGACAGAG TERM 3236 2622648 - 2622619 - R 100 -17.3 -2.93708 | opp_overlap 2622624, overlap 2622618 2622624 CGTTGTTAAAAACAG GAAAACGGCCCCT GTCC AGGAGCCGTTTTC AAAGTGAACGACAGA TERM 3237 2622624 - 2622643 + r 79 -9.2 -4.11216 | opp_overlap 2622619 2622618 2622624 TTAAAAACAGGAAAA CGGCCCCT GTCC AGGAGCCG TTTTCAAAGTGAACG TERM 3238 2622643 - 2622624 - R 95 -11.4 -4.60746 | opp_overlap 2622624, overlap 2622619 2622618 TTAAAAACAGGAAAA CGGCCCCT GTCC AGGAGCCG TTTTCAAAGTGAACG SFV_2559 2623847 - 2622669 - | outer membrane protein assembly complex subunit YfgL TERM 3239 2623095 - 2623079 - G 78 -8.7 -4.18506 | overlap 2623091 CCAGCGCGAAAACAA CGCCGTT AAC AACGACG GGAGTCGTGTCAACA TERM 3240 2623251 - 2623240 - G 72 -7.2 -4.25283 | ACGGCCGCACCAAAA GCCG TTGC CGGC GCAGACTCGCCACGC SFV_2560 2624478 - 2623858 - | hypothetical protein TERM 3241 2624021 - 2624039 + g 77 -8.2 -4.07687 | GCAGCCCACCCTTCA CCTTTGAT GGT ATCAAGGG TTTTCAGCGCGGCAT TERM 3242 2624290 - 2624302 + g 82 -9.1 -4.25104 | TTTGCCTTCGCTCAC TGCGG TAA CCGCA TTTTGATAGGCAAGA hisS 2625740 - 2624496 - | histidyl-tRNA synthetase TERM 3243 2625734 - 2625759 + g 86 -6.1 -5.03747 | CGCCAGGCAGGTAAT CGTTCATGCCG CGAA TGGCTTGAATG TTTTTTGCCACGTTT TERM 3244 2625843 - 2625797 - R 72 -3 -5.0916 | gap 1 TTCTGAATATAAAAA TGAACCCTCAACGCTTCCC TCAATGTTTC GGGA-GCCATGCGGGTTCA ATCATACACGGGAAG TERM 3245 2625872 - 2625852 - R 82 -13.3 -3.00298 | opp_overlap 2625846 GGGTTCAATCATACA CGGGAAGCG AGG CGCTTCCCA TCACGTTATTATTTT ispG 2627000 - 2625873 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase yfgA 2628040 - 2627027 - | hypothetical protein TERM 3246 2628320 - 2628283 - R 100 -12.2 -4.42653 | gap 1, overlap 2628285 ACTTCATTCATAAAA GATTACGCCACGG-TAC ATAAA GTAACCGTGGCGTAATG GCTATCAGACCGCTT TERM 3247 2628318 - 2628285 - R 100 -14.8 -3.82117 | gap 1, overlap 2628283 TTCATTCATAAAAGA TTACGCCACGG-TAC ATAAA GTAACCGTGGCGTAA TGGCTATCAGACCGC yfgB 2629479 - 2628325 - | hypothetical protein TERM 3248 2629241 - 2629261 + g 71 -9 -3.50832 | gap 1, overlap 2629238 TCTTCAACCACTTCC GGTGCGCGG ATTT CCGC-CACC TCTTTCAGTTTGCCG TERM 3249 2629568 - 2629537 - R 91 -8.7 -5.04249 | gap 2, opp_overlap 2629536 2629533 2629532, overlap 2629539 GGTTGAAAAAAGAAA CG-CCCCGG-TGAGC GGCT GCTCGTCCGGGGGCG CTGCATTGTACAAAT ndk 2630060 - 2629629 - | nucleoside diphosphate kinase pbpC 2632258 - 2630210 - | putative peptidoglycan enzyme TERM 3250 2630586 - 2630611 + g 72 -7.6 -3.96148 | gap 2 TCTTGCTTCGCCTGC GGGCAGTCAGCG GCGA CGC-G-CTGCCC TTTGTCATCCAGCCA TERM 3251 2631432 - 2631419 - G 70 -3.8 -4.60949 | overlap 2631415 CAGACCATAAACAAA CGGT TTGAGC ACCG ATCCTGGCGATCGGA SFV_2567 2632676 - 2632260 - | ISSfl2 ORF TERM 3252 2632313 - 2632285 - G 71 -3.2 -4.82901 | TGCGGGGTATAAAAA GTCCCG-TCGCGCA TCA TG-GCGAACAGAAC GTCGCAGCGTCGTCT TERM 3253 2632835 - 2632848 + r 72 -8.1 -3.78934 | GCGCAAGTTTGCAGA GCTGG GCTG CCAGC TTCTTCTCACCCAGC SFV_2568 2633457 - 2632855 - | ISSfl2 ORF TERM 3254 2634178 - 2634221 + r 79 -12.6 -2.90194 | opp_overlap 2634185 2634193, overlap 2634181 2634185 2634193 GAAATAAGTATTTTA CAGGCAATAAAAAACCGCCG AATT TGGCGTTTTTTTATTGCTGG TCTGGTTCGCGGCCT TERM 3255 2634181 - 2634218 + r 90 -15.1 -2.69964 | opp_overlap 2634185 2634193, overlap 2634178 2634185 2634193 ATAAGTATTTTACAG GCAATAAAAAACCGCCG AATT TGGCGTTTTTTTATTGC TGGTCTGGTTCGCGG TERM 3256 2634193 - 2634206 + r 100 -5.9 -5.84381 | opp_overlap 2634193 2634185, overlap 2634185 2634181 2634178 CAGGCAATAAAAAAC CGCCG AATT TGGCG TTTTTTTATTGCTGG TERM 3257 2634510 - 2634540 + r 71 -9.8 -3.22223 | opp_overlap 2634510 2634517, overlap 2634514 2634517 CTTTCCTTTAAAAAA CAAAAAACCGCC AAAATCA GGCGGTTATTTG TTGCTGGTCCGGTTC TERM 3258 2634540 - 2634510 - R 100 -9.8 -5.00616 | opp_overlap 2634510 2634514 2634517, overlap 2634517 CTTTCCTTTAAAAAA CAAAAAACCGCC AAAATCA GGCGGTTATTTG TTGCTGGTCCGGTTC TERM 3259 2634517 - 2634533 + r 72 -6.5 -4.25016 | opp_overlap 2634517 2634510, overlap 2634514 2634510 TTAAAAAACAAAAAA CCGCC AAAATCA GGCGG TTATTTGTTGCTGGT TERM 3260 2634533 - 2634517 - R 100 -6.5 -6.04324 | opp_overlap 2634514 2634510 2634517, overlap 2634510 TTAAAAAACAAAAAA CCGCC AAAATCA GGCGG TTATTTGTTGCTGGT TERM 3261 2634625 - 2634656 + r 79 -9 -4.10144 | gap 1, opp_overlap 2634615 2634628, overlap 2634628 GACAATACTCGCCAG TAACTCTCTTTTTGT CAA GCAA-AAGAGAGTTA TTATTGTTCTGTTAG TERM 3262 2634913 - 2634899 - R 89 -11.4 -4.15884 | opp_overlap 2634885 CCAAGTAAATAATAA CCGGAG TCT CTCCGG CGACAATTTACTGGT TERM 3263 2634962 - 2634985 + r 95 -12.4 -4.3208 | opp_overlap 2634957, overlap 2634964 CAGCAAGTAAGCCCG AATGCCGCCC TTTA GGGCGGCATA TTTTAGATTATCCGG TERM 3264 2634964 - 2634983 + r 100 -15 -3.76167 | opp_overlap 2634957, overlap 2634962 GCAAGTAAGCCCGAA TGCCGCCC TTTA GGGCGGCA TATTTTAGATTATCC sseB 2635773 - 2634988 - | enhanced serine sensitivity protein SseB TERM 3265 2635493 - 2635522 + g 83 -13 -3.02263 | opp_overlap 2635490, overlap 2635497 2635520 2635521 ATCTCAAACAATGTG CGAACGGGCATT ACGACA AATGCCTGTTCG TCTTCAACCGCCTGT TERM 3266 2635865 - 2635900 + r 86 -11.8 -3.51976 | opp_overlap 2635862 2635861 2635877, overlap 2635861 2635868 AATTTGCAGAATTTG TAGGCCGGATAAGGCG TTTA CGCCGCATCCGGCATA TTAGTTTACGCCGTT TERM 3267 2635868 - 2635897 + r 81 -13.5 -2.59569 | opp_overlap 2635862 2635861 2635877, overlap 2635865 2635861 TTGCAGAATTTGTAG GCCGGATAAGGCG TTTA CGCCGCATCCGGC ATATTAGTTTACGCC pepB 2637189 - 2635906 - | aminopeptidase B TERM 3268 2636062 - 2636041 - G 70 -6.5 -4.16284 | gap 1, overlap 2636042 2636053 ATAGTTCTCAACAAA GTGCGACAGG AAG CCCGCCGC-C GTGCTCGCGCCTGCC TERM 3269 2637242 - 2637221 - R 79 -7.9 -4.4261 | opp_overlap 2637221 CGTTTAACAGCAAAA CGGACTCCC CCCA GGCAGCCCG TTCATTCACTCGGCT yfhJ 2637448 - 2637248 - | hypothetical protein fdx 2637795 - 2637460 - | [2FE-2S] ferredoxin, electron carrer protein hscA 2639647 - 2637797 - | chaperone protein HscA TERM 3270 2639128 - 2639140 + g 76 -9.1 -3.74693 | CATGCAACCCCGCCA GACGC GCC GCGTC TTTGGTGCCCTGACG hscB 2640179 - 2639664 - | co-chaperone HscB TERM 3271 2640259 - 2640233 - R 84 -8.7 -4.6951 | gap 1, opp_overlap 2640233 ATCAGGTAAAACAAA CCCCACGCGCAG GCGA CCACG-GTGGGG TTATCGGTATGCGCA iscA 2640604 - 2640275 - | iron-sulfur cluster assembly protein SFV_2577 2641001 - 2640615 - | scaffold protein yfhO 2642243 - 2641029 - | cysteine desulfurase SFV_2579 2642843 - 2642355 - | DNA-binding transcriptional regulator IscR TERM 3272 2642739 - 2642729 - G 75 -6.8 -4.38927 | GTTCCAGATAAGAAA GGGA AAT TCCC TGACGTTCGGAAATA TERM 3273 2642866 - 2642878 + r 91 -6.2 -5.55769 | TTCACCTCAAACTCG CCCC TGCCC GGGG TTTTTTATTGTAAAA TERM 3274 2642928 - 2642975 + r 72 -8.6 -3.6715 | overlap 2642930 GGGTCAAGTCTGACA TTCCCGAGTAAATTGGTCAACT ATTT ACTTGACTGATTTAGTCGGGTA TTTAACCTTCAGTGC TERM 3275 2642930 - 2642973 + r 79 -11.2 -3.4149 | overlap 2642928 GTCAAGTCTGACATT CCCGAGTAAATTGGTCAACT ATTT ACTTGACTGATTTAGTCGGG TATTTAACCTTCAGT SFV_2580 2643853 - 2643113 - | putative ATP synthase beta subunit TERM 3276 2643737 - 2643774 + g 76 -7.9 -4.25104 | gap 1, overlap 2643727 2643740 GGAGTCGGGTTTCAC CAGT-GGATTAACCAGCC ACA GATTGGTTAATCCCATTG TTTTCATGGCACGGG TERM 3277 2643740 - 2643771 + g 70 -6 -4.25256 | gap 1, overlap 2643737 GTCGGGTTTCACCAG T-GGATTAACCAGCC ACA GATTGGTTAATCCCA TTGTTTTCATGGCAC TERM 3278 2643990 - 2644018 + G 79 -12.3 -3.02166 | opp_overlap 2643991, overlap 2643986 CATCCGATGCTGAAC ATCGCCGTGCGCG CAG CGCGCAAGGCGGG TAATTTAATTGCCAA TERM 3279 2644017 - 2643991 - g 87 -13.6 -3.04263 | opp_overlap 2643990 2643986 ATCCGATGCTGAACA TCGCCGTGCGCG CAG CGCGCAAGGCGG GTAATTTAATTGCCA suhB 2643972 - 2644775 + | inositol monophosphatase SFV_2582 2644920 - 2645774 + | putative enzyme csiE 2645965 - 2647245 + | stationary phase inducible protein CsiE hcaT 2648376 - 2647237 - | putative 3-phenylpropionic acid transporter TERM 3280 2647517 - 2647501 - G 70 -10.1 -3.23216 | opp_overlap 2647501 2647504 TTGCACCACTATCAA CCACGGC AAC GCCGTAG TTGCTCCCATAATGC TERM 3281 2647782 - 2647759 - G 86 -11 -3.9009 | overlap 2647750 2647779 AACGCAGGCCAGAAA GCGCCAGTTC TGGC GAACCAGCGC CAACCACGCAGACCA TERM 3282 2648509 - 2648498 - R 73 -2.2 -5.22794 | gap 1, opp_overlap 2648499, overlap 2648499 ACAAGCACTAAAAAA CTGCG ATC CGC-G ACGCATGTTGCAAAA hcaR 2649426 - 2648536 - | DNA-binding transcriptional regulator HcaR hcaA1 2649562 - 2650923 + | large terminal subunit of phenylpropionate dioxygenase hcaA2 2650920 - 2651438 + | 3-phenylpropionate dioxygenase subunit beta hcaC 2651438 - 2651758 + | 3-phenylpropionate dioxygenase ferredoxin subunit TERM 3283 2652208 - 2652186 - g 77 -10.4 -3.59262 | overlap 2652187 TTTCACACTGTCAAA TGCCGCCTGG TAT CCTGGCGGCG GTGGCCCGCTGTACA TERM 3284 2652207 - 2652187 - g 85 -13.9 -2.75343 | overlap 2652186 TTCACACTGTCAAAT GCCGCCTGG TAT CCTGGCGGC GGTGGCCCGCTGTAC hcaB 2651755 - 2652567 + | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase TERM 3285 2652905 - 2652924 + G 76 -10.7 -3.40371 | opp_overlap 2652900 2652899 TTATAGCAACCGGCG CGGCAGC TCGACC GCTGCCG TTGCTTGATGCACTG hcaD 2652577 - 2653809 + | phenylpropionate dioxygenase ferredoxin reductase subunit yphA 2653834 - 2654238 + | hypothetical protein TERM 3286 2654367 - 2654332 - T 93 -11.8 -3.72695 | opp_overlap 2654334, overlap 2654334 ATCGGCGTTAGGAAA GATGCCGGATGCGGCG TGAA CGCCTTATCCGGCATT TTATAAATTACAGCC TERM 3287 2654334 - 2654365 + T 100 -16.6 -4.4715 | opp_overlap 2654334 2654332 CGGCGTTAGGAAAGA TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA TTTTATAAATTACAG TERM 3288 2654365 - 2654334 - T 93 -14.4 -3.44848 | opp_overlap 2654334, overlap 2654332 CGGCGTTAGGAAAGA TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA TTTTATAAATTACAG yphB 2655247 - 2654375 - | hypothetical protein yphC 2656320 - 2655259 - | putative oxidoreductase TERM 3289 2656004 - 2655994 - G 74 -8.2 -3.93985 | overlap 2655995 ACAAGAGATAGGAAA GCCG CGG CGGC AGTTCGGGCAAAAAC yphD 2657384 - 2656386 - | putative transport system permease protein TERM 3290 2656785 - 2656798 + g 70 -3.7 -4.63527 | opp_overlap 2656785, overlap 2656786 AACGGCAAAAACCGA GCGCC CGAA GGCGG TTTTTCGGCTAATGA yphE 2658920 - 2657409 - | putative ATP-binding component of a transport system TERM 3291 2657795 - 2657815 + g 74 -2.5 -5.055 | overlap 2657796 2657801 GGATGGTGGACCATT GCAGCAC ACCGTTG GTGCTGA TTTTTTGCCGATTGG TERM 3292 2657873 - 2657886 + g 70 -5.2 -4.41548 | overlap 2657860 GCCAGGGAATGATCC CCGC TTCTTT GCGG TTTTCTGGCGTATAG yphF 2659926 - 2658943 - | putative LACI-type transcriptional regulator yphH 2663416 - 2664615 + | putative NAGC-like transcriptional regulator TERM 3293 2664652 - 2664635 - T 87 -11.3 -4.00066 | opp_overlap 2664635 GCGATAACGTAGAAA GGCTTCC CGAA GGAAGCC TTGATGATCATAAAC TERM 3294 2664635 - 2664652 + T 77 -11.3 -3.23216 | opp_overlap 2664635 GCGATAACGTAGAAA GGCTTCC CGAA GGAAGCC TTGATGATCATAAAC glyA 2666066 - 2664813 - | serine hydroxymethyltransferase TERM 3295 2666834 - 2666818 - g 72 -5.7 -4.50661 | opp_overlap 2666820, overlap 2666820 AATCTATAACGAAAA CGCCAGC AAA GCCGGTG GTTGGGAAGGTACTC hmpA 2666393 - 2667583 + | nitric oxide dioxygenase glnB 2667966 - 2667628 - | nitrogen regulatory protein P-II 1 yfhA 2669361 - 2668027 - | putative 2-component transcriptional regulator TERM 3296 2668736 - 2668726 - G 72 -8.2 -3.74251 | overlap 2668727 GACAGCGCCAGTAAA CGCG CCA CGCG CATGACCAAACAGCT TERM 3297 2669089 - 2669064 - G 76 -4 -5.01811 | gap 1, overlap 2669065 TGAGGAAACTAAAAA CGCC-CTGCTG TGTTG CAGCAACGGCA TCGGGGATAGAACCA yfhG 2670070 - 2669351 - | hypothetical protein TERM 3298 2670217 - 2670203 - R 72 -2.8 -5.01553 | opp_overlap 2670205, overlap 2670205 AACTGACAAATAAAA TAGCCT GAT AGGATA GGCTGTTAGCATTAT yfhK 2671656 - 2670229 - | putative 2-component sensor protein TERM 3299 2670859 - 2670869 + g 93 -8.2 -4.90266 | overlap 2670844 GCCCTCGCGCATACT CGCC AGT GGCG TTTTTAATTCATGAG TERM 3300 2671744 - 2671714 - R 93 -16.3 -2.91681 | opp_overlap 2671717 2671721, overlap 2671717 2671721 GGGGAAGTTCAGATA CAACAAAGCCGGG AATTA CCCGGCTTTGTTA TGGAATAAGGCGGTG TERM 3301 2671717 - 2671741 + r 100 -15.8 -3.32844 | opp_overlap 2671714 2671717 2671721, overlap 2671721 GAAGTTCAGATACAA CAAAGCCGGG AATTA CCCGGCTTTG TTATGGAATAAGGCG TERM 3302 2671741 - 2671717 - R 100 -15.8 -3.60412 | opp_overlap 2671717 2671721, overlap 2671714 2671721 GAAGTTCAGATACAA CAAAGCCGGG AATTA CCCGGCTTTG TTATGGAATAAGGCG TERM 3303 2671737 - 2671721 - R 93 -10.8 -4.42974 | opp_overlap 2671721 2671717, overlap 2671717 2671714 TTCAGATACAACAAA GCCGGG AATTA CCCGGC TTTGTTATGGAATAA TERM 3304 2671721 - 2671737 + r 90 -10.8 -4.32177 | opp_overlap 2671717 2671714 2671721, overlap 2671717 TTCAGATACAACAAA GCCGGG AATTA CCCGGC TTTGTTATGGAATAA TERM 3305 2672096 - 2672077 - R 71 -10 -3.15252 | AAATCAATCATTTAA GTGTCGCC AGAA AGCGACAC GGTAAACCACCCATT TERM 3306 2672136 - 2672153 + r 70 -9.1 -3.45737 | opp_overlap 2672136 TACAGACACAAAAAA GCTCCCG GAGT TGGGAGC TTATGATAGTGGTTG TERM 3307 2672153 - 2672136 - R 100 -8.4 -5.4492 | opp_overlap 2672136 TACAGACACAAAAAA GCTCCC GGAGTT GGGAGC TTATGATAGTGGTTG purL 2676275 - 2672232 - | phosphoribosylformylglycinamidine synthase TERM 3308 2674923 - 2674934 + g 74 -2.2 -5.14163 | overlap 2674917 2674916 CAGCTCTTCGCCATT GTGG CTGT TCAC TTTTTCTTCATAAGT TERM 3309 2676234 - 2676223 - G 75 -4.4 -4.86731 | TGCGTGGAAATAAAA TCAC CATC GTGA ATTAGCAACGCGTGC TERM 3310 2676397 - 2676387 - H 75 -2.6 -5.1848 | opp_overlap 2676387 AACTAATTGAAAAAA TTAA AGA TTAA TTATCTGTTCATCGG yfhD 2676516 - 2677934 + | putative transglycosylase yfhC 2678434 - 2677931 - | tRNA-specific adenosine deaminase yfhB 2679103 - 2678492 - | hypothetical protein TERM 3311 2678758 - 2678743 - G 74 -6.1 -4.46112 | overlap 2678755 GCGTATCGAAATAAA CCGCT TCAACC AGCGG CTGCGGAGAGCCGGT TERM 3312 2679123 - 2679101 - G 86 -6.2 -5.16572 | overlap 2679104 2679106 ATCTAAGTCAAAAAA CACCACACGA CGC TCGTGAGTTG CCAAACCATACTCCT TERM 3313 2680073 - 2680041 - g 72 -7.7 -3.94877 | ATTGCCGAAGAACAA GCGACAAACAGTGCT TCA ATCTCTGCTTGTCAC GCTCAGGGAATGTTA yfhH 2679264 - 2680184 + | putative DNA-binding transcriptional regulator pin 2681077 - 2680637 - | DNA-invertase TERM 3314 2681157 - 2681182 + H 79 -2.7 -5.40072 | gap 1, opp_overlap 2681157 2681171 2681176, overlap 2681170 2681180 TTCCATGGGAATACA CAGT-CATTATA AAA TAGAATGTACTG TTTTTTTAAAGAAAA TERM 3315 2681211 - 2681171 - H 79 -8 -4.48072 | gap 1, opp_overlap 2681157 2681170 2681180, overlap 2681157 2681176 ACAGTCATTATAAAA TAGAATGTACTGTTTTTTT AAAG AAAAAAACAGTACATTG-A GATATGATTTGGATC TERM 3316 2681207 - 2681176 - H 100 -14.8 -4.04187 | opp_overlap 2681157 2681170 2681180, overlap 2681157 2681171 CATTATAAAATAGAA TGTACTGTTTTTTT AAAG AAAAAAACAGTACA TTGAGATATGATTTG ipaH_6 2681569 - 2683395 + | invasion plasmid antigen TERM 3317 2683460 - 2683437 - T 93 -10.2 -4.58395 | opp_overlap 2683449 2683450, overlap 2683439 CTGACTCCGGAAAAA CAGAGGCCCG CCCC CGGGCCTCCC CGGATTCATCCGTTT TERM 3318 2683458 - 2683439 - T 100 -15 -3.90762 | opp_overlap 2683449 2683450, overlap 2683437 GACTCCGGAAAAACA GAGGCCCG CCCC CGGGCCTC CCCGGATTCATCCGT SFV_2612 2684198 - 2683575 - | hypothetical protein SFV_2613 2685417 - 2684149 - | putative tail fiber protein SFV_2614 2685986 - 2685441 - | putative tail fiber assembly protein SFV_2615 2686462 - 2686010 - | putative IS1 encoded protein SFV_2616 2686571 - 2686936 + | insertion sequence 2 OrfA protein SFV_2618 2688710 - 2687724 - | putative tail fiber protein SFV_2617 2686960 - 2687799 + | IS2 ORF2 SFV_2619 2689302 - 2688697 - | hypothetical protein SFV_2620 2689990 - 2689313 - | putative bacteriophage protein SFV_2621 2690070 - 2690372 + | IS600 ORF1 SFV_2622 2690513 - 2691226 + | IS600 ORF2 TERM 3319 2691273 - 2691293 + T 82 -11.2 -3.64488 | overlap 2691271 CAGTACACCTCATTT TACAGCCC CGTCC GGGCTGTA TGTTTTCACCAGCTT SFV_2623 2692367 - 2691267 - | hypothetical protein TERM 3320 2691399 - 2691456 + g 100 -13.6 -4.91977 | gap 2, opp_overlap 2691420 AACTGAATCACGCCA GGCTTTCTGCTCGTCGATAATCCGCCGG ATCT CAGGC-G-TTATCGGCAGGCGGAAAGCC TTTTGTGTTTTCATA TERM 3321 2692079 - 2692098 + g 78 -5.7 -4.81249 | gap 1, opp_overlap 2692079 CCAGCTGGATAACGA GCTCCGGC CACTC GCCG-AGC TTTTTACCTTTGAGG TERM 3322 2692176 - 2692187 + g 79 -4.4 -4.93696 | GCTGAAATCGATACG GAGA TAGT TCTC TTTTTCGTATTTGGA TERM 3323 2692839 - 2692869 + r 76 -9.3 -3.71284 | opp_overlap 2692838 2692839 CCACGCGGATAAAAT TTAATATTCTACT CTGGA AGTAGAGTATTAA TTATATTACTGGGAA insB 2693408 - 2692905 - | IS1 ORF2 SFV_2625 2693483 - 2693668 + | putative IS1 encoded protein TERM 3324 2693793 - 2693764 - T 79 -10 -3.78022 | opp_overlap 2693764 TTTATAGTTATTAAA GGCGCGTCCAAT TGGTTC ACCGGACGCACC TTAAGTACGTTTCCT TERM 3325 2694253 - 2694289 + T 95 -10.9 -4.56597 | opp_overlap 2694253, overlap 2694259 AATTAAAGTTAAAAA GTAAAACCCCCGTTC CTTACCA GTTCGGGGGTTTTAC TTTTTAAAGAGAACG TERM 3326 2694289 - 2694253 - T 100 -11.6 -4.83759 | opp_overlap 2694253 2694259 AATTAAAGTTAAAAA GTAAAACCCCCGTTCC TTACC AGTTCGGGGGTTTTAC TTTTTAAAGAGAACG TERM 3327 2694259 - 2694283 + T 73 -4.1 -4.77757 | opp_overlap 2694253, overlap 2694253 AGTTAAAAAGTAAAA CCCCCGTTC CTTACCA GTTCGGGGG TTTTACTTTTTAAAG acpS 2694693 - 2694313 - | 4'-phosphopantetheinyl transferase TERM 3328 2694551 - 2694569 + g 74 -8.1 -4.14392 | opp_overlap 2694551 CGCTTCGCCAGAAAA CGCACCG GCTGG TGGTGCG TTTTCCAGATTGCCC TERM 3329 2694569 - 2694551 - G 78 -7.4 -4.36914 | opp_overlap 2694551 CGCTTCGCCAGAAAA CGCACC GGCTGGT GGTGCG TTTTCCAGATTGCCC pdxJ 2695424 - 2694693 - | pyridoxal phosphate biosynthetic protein PdxJ recO 2696164 - 2695436 - | DNA repair protein RecO TERM 3330 2695587 - 2695597 + g 72 -6.8 -4.21275 | overlap 2695569 2695568 TCAGGAAATTCCCGC GCGT TTA ACGC TTTTAACTGCCTTCC era 2697081 - 2696176 - | GTP-binding protein Era TERM 3331 2696989 - 2697000 + g 70 -5.8 -4.16284 | GGTGATGGAGATTTT CTGC CCCA GCAG TTTGTTCAACAATGT rnc 2697758 - 2697078 - | ribonuclease III TERM 3332 2698017 - 2697985 - R 100 -21.5 -4.07877 | TTATCTCATAAATAA TTCACGTTGTCGCCA TAA CGGCGACAACGTGAA CGAAGATGGCTATTA lepB 2699004 - 2698030 - | lsignal peptidase I TERM 3333 2698566 - 2698582 + g 76 -9.5 -3.76373 | overlap 2698544 GTAAACCCACCGCGC GCTTGAT GTA ATCAAGC TTTGGATCTTCCGGA lepA 2700819 - 2699020 - | GTP-binding protein LepA TERM 3334 2699118 - 2699131 + g 74 -2.3 -5.07486 | overlap 2699116 TCTTACCTTCTTTCT GCTTC TGCA GCAGC TTTTTCTTACGGCTG TERM 3335 2701024 - 2701007 - R 91 -11.3 -4.32607 | GCAAAATGCAACAAA GCCAGTG AAAT CACTGGC TCGCGTCTTCCGAAG rseC 2701496 - 2701017 - | SoxR reducing system protein RseC rseB 2702449 - 2701493 - | periplasmic negative regulator of sigmaE TERM 3336 2702390 - 2702363 - G 77 -10.4 -3.61715 | CATCTGCTGTAATAA CGCCCCGGACGC GGGA GTGACCGAGGCG TTAGCAGAGAATAAC rseA 2703099 - 2702449 - | anti-RNA polymerase sigma factor SigE TERM 3337 2702825 - 2702837 + g 78 -7.7 -4.43189 | opp_overlap 2702833, overlap 2702833 CACGGACGTACTTTC TGCCA GAA TGGCA TTTTCTGCCATTGAT rpoE 2703707 - 2703132 - | RNA polymerase sigma factor RpoE TERM 3338 2704138 - 2704116 - R 77 -3.5 -5.20222 | opp_overlap 2704137 ATTAAACAAAGAAAA TGAATACTC TCCCT GAACATTCA TGTGACGTGTTGATT TERM 3339 2704262 - 2704282 + r 76 -8.9 -3.73775 | overlap 2704265 TCAACATTTTATGCC CAGGGCGGT ATT GCCGCCGTG TTTGATGAAACTGAC TERM 3340 2705754 - 2705741 - R 75 -3.1 -5.1634 | gap 1 ATAAACAGATAAAAA GC-CTG GGT CAGCGC CGTATACGCTTCGGA yfiC 2706579 - 2705722 - | putative enzyme TERM 3341 2705838 - 2705812 - G 88 -12.4 -3.58269 | overlap 2705836 TAAGCGATCGCTAAA GCATTCTCCC GCCTGCG GGGAGAATGC CAGCAGCACCCGATG TERM 3342 2706497 - 2706484 - G 77 -5.9 -4.7254 | ACCTTGCAGGAAAAA CGGCG ATAG CACCG GGTGAGAACAATACC TERM 3343 2707028 - 2707017 - g 72 -4.4 -4.67943 | CTGCAATACATAAAA GAAG AGAA CTTC GATTGCCGCGCGGTT srmB 2706591 - 2707925 + | ATP-dependent RNA helicase SrmB TERM 3344 2707929 - 2707954 + T 100 -15.5 -5.40072 | opp_overlap 2707927 2707926 ACAGAAGAGTAATCT CAATGCCGGGT TTAA GCCCGGCATTG TTTTTTTACGCAACC yfiE 2708886 - 2707960 - | LysR family transcriptional regulator TERM 3345 2708427 - 2708410 - G 75 -6.9 -4.4009 | opp_overlap 2708409, overlap 2708413 CCCTACGCGATAAAA GACGCCG ACAT CGGCCTC ATCATTCAGTAGCGC TERM 3346 2708497 - 2708483 - G 70 -7.1 -4.05446 | GCCTGCAACGATAAA CGCAC TTTTG GTGCG CGTTGCCGAAAACGC TERM 3347 2708755 - 2708769 + g 70 -5 -4.57569 | AAAAGTCACCGTCGA TTGTGT ACA GCACAA TTTTTGCGAAGCTCG TERM 3348 2708790 - 2708770 - G 82 -11.3 -3.46602 | TTGTGTACAGCACAA TTTTTGCGA AGC TCGCAAAAA GGAACCCTCTTCCAC yfiK 2708944 - 2709531 + | neutral amino-acid efflux protein TERM 3349 2709508 - 2709520 + T 72 -4.8 -4.66537 | CTGTTGCTGGTCTAT TGCG CGGTA CGCA TTTTCTATTAACGAA TERM 3350 2709564 - 2709541 - T 100 -16.8 -5.65513 | opp_overlap 2709541 2709533 TATTAACGAAAAAAA GCGGAAGAGG TCGC CCTCTTCCGC TTAGTAACTTGCTAC TERM 3351 2709541 - 2709564 + T 100 -16.8 -3.22884 | opp_overlap 2709541, overlap 2709533 TATTAACGAAAAAAA GCGGAAGAGG TCGC CCTCTTCCGC TTAGTAACTTGCTAC yfiD 2709970 - 2709587 - | autonomous glycyl radical cofactor GrcA TERM 3352 2710114 - 2710098 - H 77 -3.7 -5.24551 | TTAAATCAACAAAAA CCACA CATCGAT TGTGG TCGTAAATGGATTTT TERM 3353 2710737 - 2710754 + G 100 -9.1 -5.18726 | opp_overlap 2710733 2710736 AGCCTGATTAACCAG CACCGCG AAGG CGTGGTG TTTTTGTTGTGGGGA ung 2710275 - 2710964 + | uracil-DNA glycosylase TERM 3354 2711005 - 2710978 - T 90 -13.4 -3.5394 | opp_overlap 2710976 2710979 2711002 2711004, overlap 2710979 AAATTTGCGGGGAAA TGCCGGATGGCA GAGT TGCCACCCGGCT GATTTATCAGGCTTT TERM 3355 2711004 - 2710979 - T 95 -16.9 -2.72043 | opp_overlap 2710976 2710979 2711002, overlap 2710978 AATTTGCGGGGAAAT GCCGGATGGCA GAGT TGCCACCCGGC TGATTTATCAGGCTT TERM 3356 2710979 - 2711004 + T 88 -14.7 -3.0169 | opp_overlap 2710979 2710978, overlap 2710976 2711002 AATTTGCGGGGAAAT GCCGGATGGCA GAGT TGCCACCCGGC TGATTTATCAGGCTT yfiF 2712049 - 2711012 - | putative methyltransferase TERM 3357 2711848 - 2711836 - G 71 -9.1 -3.53012 | opp_overlap 2711816 CCGGCGCGCGGGAAA CCGTG CGC CACGG CGAATCTTCCCACTT trxC 2712256 - 2712675 + | thioredoxin 2 TERM 3358 2712682 - 2712702 + F 100 -14.7 -4.50976 | TCTCTTTAATCTTAC CGGGGCGCA TCT TGTGCCCCG TTTTCTCCTCTGCGA TERM 3359 2712715 - 2712725 + G 74 -2.4 -5.02476 | overlap 2712723 CCGTTTTCTCCTCTG CGAC AAT GGCG TTTTTTCGACGCTCT TERM 3360 2712777 - 2712802 + G 70 -3.9 -4.63218 | overlap 2712780 CTCCAGTTACGCGCC GAGCGTATTGC GCGC GCAACACGTCC TTTTCTTGCCCGCGG TERM 3361 2712957 - 2712941 - g 72 -10.1 -3.3782 | opp_overlap 2712940 2712938 CACCGAGCCAATGAA GCCCAGT AAT ACCGGGC GTCTGATTGCTGATA yfiP 2712693 - 2713442 + | hypothetical protein TERM 3362 2713884 - 2713926 + G 70 -5.5 -4.42806 | overlap 2713869 2713880 CTGGCAAGGTCTGAA TGCCAGCTTTTCGCCTGTG CCGAT TAAACGCGGCAAGCTGGCG TTTATTTCGCAATCG TERM 3363 2715165 - 2715155 - g 77 -6.8 -4.58395 | overlap 2715156 2715157 TCGATCGCGTAAAAA TGGC CTG GCCA CAGGCGCGGGTCCAC yfiQ 2713474 - 2716134 + | hypothetical protein pssA 2716248 - 2717603 + | phosphatidylserine synthase TERM 3364 2717626 - 2717610 - f 72 -9.4 -3.51032 | opp_overlap 2717610 ATCCTGTAATCACAA CCCCGT CCTGT ACGGGG TTTGTTTTTTGGAGG TERM 3365 2717610 - 2717626 + F 100 -9.4 -5.04249 | opp_overlap 2717610 ATCCTGTAATCACAA CCCCGT CCTGT ACGGGG TTTGTTTTTTGGAGG yfiM 2717649 - 2717972 + | hypothetical protein kgtP 2719267 - 2717969 - | alpha-ketoglutarate transporter TERM 3366 2719522 - 2719510 - H 70 -9.1 -3.4072 | overlap 2719512 TATGTGGGAGTATAA GACGC GCA GCGTC GCATCAGGCATTTTT TERM 3367 2719576 - 2719557 - H 100 -13.6 -4.74103 | opp_overlap 2719557 GCGCCAATGCAAAAA GGCCATCC TGAC GGATGGCC TTTCGCTTAGTTTGA TERM 3368 2719557 - 2719576 + H 100 -13.6 -3.83214 | opp_overlap 2719557 GCGCCAATGCAAAAA GGCCATCC TGAC GGATGGCC TTTCGCTTAGTTTGA TERM 3369 2719723 - 2719744 + H 74 -8.7 -3.91196 | GCTAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 3370 2722212 - 2722224 + H 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 3371 2722766 - 2722790 + H 71 -8 -3.93061 | gap 1, opp_overlap 2722772 AAAATTTGAGAGACT CAC-GAACAAC TTTC GTTGTTCAGTG TTTCAATTTTCAGCT TERM 3372 2722992 - 2723005 + H 75 -6.7 -4.41177 | overlap 2722957 GTATCAGTCTGCTTC GCAAG ACGC CTTGC TTTTCACTTTCTATC TERM 3373 2725037 - 2725020 - H 74 -3.3 -5.04597 | overlap 2724992 2725021 2725023 ACTTATAGACAAAAA CGAGCCC CGAA GGGCTAA TGCCGATCAGTTAAG TERM 3374 2725111 - 2725086 - H 72 -9.1 -3.61398 | opp_overlap 2725086 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT TERM 3375 2725086 - 2725111 + H 100 -9.8 -5.61596 | opp_overlap 2725086 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT SFV_2655 2725101 - 2725841 + | IS4 orf SFV_2656 2725810 - 2726448 + | IS4 orf TERM 3376 2726459 - 2726430 - T 89 -9.3 -4.59109 | overlap 2726432 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACAGCTCAAGGGCT TERM 3377 2726457 - 2726432 - T 100 -16.3 -3.90762 | overlap 2726430 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACAGCTCAAGGG SFV_2657 2727236 - 2726499 - | outer membrane protein assembly complex subunit YfiO TERM 3378 2727336 - 2727326 - H 74 -8.2 -3.8766 | GCACACTATATTAAA CGGC AAA GCCG TAAAACCCCAACGAT rluD 2727371 - 2728351 + | 23S rRNA pseudouridine synthase D yfiH 2728348 - 2729079 + | hypothetical protein TERM 3379 2730013 - 2730033 + G 72 -7.5 -3.86822 | opp_overlap 2730013 AACGATCTTGCCAAA CAGGAAGGC AAC GTCATCCTG TTTATCGACGAATTA clpB 2729209 - 2731782 + | protein disaggregation chaperone TERM 3380 2731808 - 2731837 + T 89 -9.3 -4.59109 | overlap 2731810 AGCCCTTCGGGGCTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 3381 2731810 - 2731835 + T 100 -16.3 -3.90762 | overlap 2731808 CCCTTCGGGGCTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_2661 2733165 - 2731819 - | IS4 orf TERM 3382 2733183 - 2733152 - G 100 -13.9 -4.4017 | opp_overlap 2733155 CCAATGTGCATAAAA GAATCCGGAAACA AGTGAG CGTTTCCGGATTC TTACACAGCCACTGG TERM 3383 2733155 - 2733180 + g 73 -9.1 -3.61398 | opp_overlap 2733152 ATGTGCATAAAAGAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC ygdH 2734577 - 2733249 - | hypothetical protein TERM 3384 2733580 - 2733597 + g 81 -6.3 -4.86731 | gap 1 TTAAAGCTGTAGGCA TCGCCTGT ATC AC-GGCGA TTTTCTTTCACCAGC queF 2735573 - 2734725 - | 7-cyano-7-deazaguanine reductase TERM 3385 2734871 - 2734893 + g 71 -10.6 -2.86271 | opp_overlap 2734868 2734866 2734869, overlap 2734867 2734868 GGTCATTAAAGATGC GTTCCACGCA CTG TTCGTGGAAC TCGTTGTGATGACGG TERM 3386 2735738 - 2735761 + G 74 -8.9 -3.9392 | opp_overlap 2735737 2735738 CGTTAAGTGAGGAAT TGTACGGTG TTCCTT CACCGTGCA TTATTTCAACTACCG syd 2735641 - 2736186 + | SecY interacting protein Syd TERM 3387 2736757 - 2736728 - f 79 -10.7 -3.51411 | opp_overlap 2736730, overlap 2736724 2736729 ATGCTGCGAAACGAA CCGGGAGCACTGT GAAT ACAGTGCTCCCTT TTTTTATTCCTGCTA TERM 3388 2736756 - 2736729 - f 83 -14.2 -2.70525 | opp_overlap 2736730, overlap 2736728 2736724 TGCTGCGAAACGAAC CGGGAGCACTGT GAAT ACAGTGCTCCCT TTTTTTATTCCTGCT TERM 3389 2736730 - 2736755 + F 100 -17.7 -5.84381 | opp_overlap 2736729 2736728 2736724 GCTGCGAAACGAACC GGGAGCACTGT GAAT ACAGTGCTCCC TTTTTTTATTCCTGC SFV_2665 2736808 - 2737137 + | hypothetical protein yqcB 2737137 - 2737919 + | tRNA pseudouridine synthase C SFV_2667 2737937 - 2738386 + | flavodoxin TERM 3390 2738649 - 2738667 + F 76 -4.4 -4.93898 | overlap 2738660 TTGTGTTGTTGCACG GTGAGCCG CTA TGGCGCGC TTTTTATACTGCTAT SFV_2668 2738820 - 2740172 + | putative transport protein TERM 3391 2740236 - 2740213 - g 79 -10.4 -3.85092 | gap 1, opp_overlap 2740231 ATTACTGATATGAAA GTCAT-TCCGG TCG CCGGACATGAC AGCATGTTGCTCAAT TERM 3392 2740888 - 2740906 + G 70 -4.5 -4.55295 | GATCCCAACGGTGCA TGGCTGC TTGAT GAAGCCA TTTCTTTATGCAAAG ygcY 2740174 - 2741514 + | putative glucarate dehydratase TERM 3393 2742056 - 2742032 - g 70 -10.7 -2.83403 | opp_overlap 2742035, overlap 2742031 TCTGCCGTATCAAAG CCAGCCGGATG ACT CATGCGACTGG TATCGCCTGCGTCAT ygcX 2741535 - 2742875 + | putative glucarate dehydratase TERM 3394 2742916 - 2742885 - T 95 -10.9 -4.67943 | opp_overlap 2742891, overlap 2742891 CGTTAAGACAGAAAA CCAAAACCGGCTC TATCTG GAGCCGGTTTGAG ACTGATGCTAAACGC TERM 3395 2742891 - 2742910 + T 82 -11.4 -3.58522 | opp_overlap 2742885 2742891 GACAGAAAACCAAAA CCGGCTCT ATCT GGAGCCGG TTTGAGACTGATGCT TERM 3396 2742910 - 2742891 - T 100 -10.7 -4.75518 | opp_overlap 2742891, overlap 2742885 GACAGAAAACCAAAA CCGGCTC TATCTG GAGCCGG TTTGAGACTGATGCT barA 2745863 - 2743107 - | hybrid sensory histidine kinase BarA TERM 3397 2743886 - 2743899 + g 71 -2.3 -5.02323 | overlap 2743890 TACTTTCATCGGTTA CAGGC AAAA GCGTG TTTTGTTTGTGATGA TERM 3398 2744991 - 2745012 + g 70 -4.3 -4.57569 | opp_overlap 2744992, overlap 2744992 AAACTCGGATTTAAT ACGCGCC GCTTCCTG GGCGCGC TTTTTCGCCAGATCC rumA 2745920 - 2747221 + | 23S rRNA 5-methyluridine methyltransferase relA 2747269 - 2749503 + | GDP/GTP pyrophosphokinase TERM 3399 2749507 - 2749546 + F 79 -8.6 -4.2558 | opp_overlap 2749513, overlap 2749509 2749511 CACGGGAGTTAGTCT TACATAGCTGGATATGGC GTCA GCCGTATCCAGCGATATC TTTTACTCGAAGGTA TERM 3400 2749509 - 2749544 + F 86 -11.2 -3.73042 | opp_overlap 2749513, overlap 2749507 2749511 CGGGAGTTAGTCTTA CATAGCTGGATATGGC GTCA GCCGTATCCAGCGATA TCTTTTACTCGAAGG TERM 3401 2749511 - 2749542 + F 90 -13.8 -3.44672 | opp_overlap 2749513, overlap 2749509 2749507 GGAGTTAGTCTTACA TAGCTGGATATGGC GTCA GCCGTATCCAGCGA TATCTTTTACTCGAA TERM 3402 2749540 - 2749513 - f 84 -14.2 -2.88663 | opp_overlap 2749511 2749509 2749507 AGTTAGTCTTACATA GCTGGATATGGC GTCA GCCGTATCCAGC GATATCTTTTACTCG TERM 3403 2750061 - 2750049 - g 74 -7.7 -4.11869 | opp_overlap 2750049 CAAAAAATCCAGAAA CGTTG CGC CAACG TTGGCTTCGACTGGA mazG 2749599 - 2750390 + | nucleoside triphosphate pyrophosphohydrolase TERM 3404 2750948 - 2750927 - g 90 -11.5 -3.90744 | opp_overlap 2750944 GTTCTGCGTAAAGAA CGCCGCGGT GACT ACCTCGGCG CAACCGTGCAGGTTA pyrG 2750618 - 2752255 + | CTP synthetase TERM 3405 2752300 - 2752272 - f 76 -11.7 -2.7458 | opp_overlap 2752274 2752277, overlap 2752271 TAAAAAAGTTAGAAC GGCAACGCGTACC TTG GGTACGCGTTGTT TGTCTGGAGTTTCAG TERM 3406 2752274 - 2752298 + F 100 -18.7 -4.07562 | opp_overlap 2752272 2752271, overlap 2752277 AAAAAGTTAGAACGG CAACGCGTACC TTG GGTACGCGTTG TTTGTCTGGAGTTTC TERM 3407 2752277 - 2752295 + F 100 -14.6 -4.15029 | opp_overlap 2752272 2752271, overlap 2752274 AAGTTAGAACGGCAA CGCGTACC TTG GGTACGCG TTGTTTGTCTGGAGT eno 2752343 - 2753638 + | phosphopyruvate hydratase TERM 3408 2753682 - 2753663 - T 90 -13.6 -3.33162 | opp_overlap 2753663, overlap 2753628 2753627 TATCTGATTTGATAA TGCCAGCC TTCG GGCTGGCA TTTTTTATGGTGGAG TERM 3409 2753663 - 2753682 + T 100 -13.6 -5.31275 | opp_overlap 2753628 2753627 2753663 TATCTGATTTGATAA TGCCAGCC TTCG GGCTGGCA TTTTTTATGGTGGAG ygcG 2754570 - 2753698 - | hypothetical protein TERM 3410 2754919 - 2754932 + G 84 -3.7 -5.24551 | overlap 2754920 TGAGGGTTACTTTAC CGGCG TCCC CGCCA TTTTTATTCGTTTAC TERM 3411 2755011 - 2755022 + G 70 -5.8 -4.1585 | AAAAGCTTGAGGATC GGGA AGTC TCCC TTTTCAGCATTCTGG ygcF 2754863 - 2755534 + | hypothetical protein insB 2755866 - 2755573 - | IS1 ORF2 insB 2756076 - 2755903 - | IS1 ORF2 TERM 3412 2756610 - 2756594 - g 70 -10.1 -3.17392 | TATGGCTGAAGGTAA CCCTCGC ATT GCGAAGG CGACGGGCGAAGGGA SFV_2681 2756190 - 2757179 + | hypothetical protein TERM 3413 2757187 - 2757216 + F 91 -11.4 -4.21936 | AAAAATAATGTATCA GGCAGCGTTCCG CGATGA CGGGGCGTTGCC TTTTCGGCTTCTCAG TERM 3414 2757221 - 2757242 + F 100 -14.5 -3.9461 | GGGGCGTTGCCTTTT CGGCTTCTC AGGC GAGAAGCCG TTCTTATTACCGGAC ygcS 2757273 - 2758610 + | putative transport protein ygcR 2758588 - 2759367 + | putative transport protein ygcQ 2759364 - 2760224 + | putative flavoprotein TERM 3415 2760477 - 2760502 + T 74 -3.9 -5.08824 | opp_overlap 2760491, overlap 2760478 TTCATCGCATACCAG CCCGCCAGC AATCAGCG GTTGGCGGA TTTTTTCCGTCACCC SFV_2686 2762120 - 2761161 - | putative integrase TERM 3416 2761842 - 2761858 + gT 79 -3.7 -5.14965 | TGTCTTCTGCTTGAT TCCTC TGCTGGC GAGGA TTTTTTCGTAGCGAT SFV_2687 2762739 - 2762026 - | IS600 ORF2 SFV_2688 2763182 - 2762880 - | IS600 ORF1 TERM 3417 2765526 - 2765514 - g 77 -3.3 -5.055 | opp_overlap 2765518 GGAATGTTGAAAAAA TCGGC AAT GCAGA ATGCTTGTGTATTAT SFV_2689 2763458 - 2766364 + | putative bacteriophage protein TERM 3418 2766395 - 2766416 + F 100 -8.7 -5.27335 | gap 1, opp_overlap 2766392 2766395 ACTGAGCTAATAGCA GGCCTGCTGG TAA TC-GCAGGCC TTTTTATTTGGGGGA SFV_2690 2766527 - 2766715 + | putative bacteriophage protein ninB 2766712 - 2767122 + | putative recombination protein SFV_2693 2767645 - 2767337 - | hypothetical protein TERM 3419 2768096 - 2768109 + GH 93 -5.9 -5.23316 | opp_overlap 2768088 2768096 CAATATAGAGCATAA CCGCG CTCA TGCGG TTTTTTCGTGTCATG SFV_2692 2767506 - 2768336 + | putative bacteriophage protein TERM 3420 2768670 - 2768660 - g 81 -8.2 -4.37092 | ATCTGTCGCACAAAA CGCC AGA GGCG TATACCTGCATTTGC SFV_2694 2768463 - 2768846 + | hypothetical protein TERM 3421 2768908 - 2768884 - f 82 -11.4 -3.52896 | opp_overlap 2768887 GTATCACCGATACAA CCATTGCCCC CGTGT GGGGCAGTGG TTCACCACCAGCAAC TERM 3422 2769427 - 2769386 - g 86 -9.5 -4.34008 | gap 1, opp_overlap 2769401, overlap 2769378 2769383 2769387 TATCAATGAAAACAA TCAGTTTTCCCGAAATGGGG AAA CCCGTTTTCGGG-AAACTGT AAAACCCAATTTCGC TERM 3423 2769426 - 2769387 - g 85 -13 -3.19321 | gap 1, opp_overlap 2769401, overlap 2769378 2769386 2769383 ATCAATGAAAACAAT CAGTTTTCCCGAAATGGGG AAA CCCGTTTTCGGG-AAACTG TAAAACCCAATTTCG SFV_2695 2769063 - 2769971 + | hypothetical protein SFV_2696 2769982 - 2770860 + | putative replication protein DnaC TERM 3424 2770890 - 2770913 + G 72 -8.8 -3.85698 | overlap 2770893 CGTAACGATGACCTT GAAGGCGCTG TCAT CGGCGCGTTC TTTCTGCGCGGAGCA TERM 3425 2771824 - 2771812 - g 81 -6.2 -4.82901 | TCGGGCTGATAAAAA CCCG AACCA CGGG GCGTCATGACCTTGC SFV_2697 2770857 - 2772248 + | putative helicase SFV_2698 2772245 - 2772502 + | putative bacteriophage protein TERM 3426 2772587 - 2772573 - f 72 -5.6 -4.37658 | opp_overlap 2772572 2772573 AAGCCCGGGATAAAA TCACCG AAC CGGAGA GTATTTGATGAGCGT SFV_2699 2772595 - 2772795 + | putative bacteriophage protein TERM 3427 2773273 - 2773258 - f 86 -11.8 -3.65425 | opp_overlap 2773258 GCCACACAGCTTAAA CCCGCC TCCG GGCGGG TTTTTTATGCCTGAA TERM 3428 2773258 - 2773273 + F 100 -11.8 -5.28176 | opp_overlap 2773258 GCCACACAGCTTAAA CCCGCC TCCG GGCGGG TTTTTTATGCCTGAA TERM 3429 2774029 - 2774039 + G 72 -4.6 -4.64598 | opp_overlap 2773992, overlap 2774017 2774016 2774024 2774033 CCTCCGCCGGCAGTG CCGG CTA CTGG TTTTTGCAGTGGTTG SFV_2704 2773971 - 2774186 + | hypothetical protein TERM 3430 2774220 - 2774206 - f 74 -7.2 -4.29227 | overlap 2774213 TGAAGCATGAAGAAA TGAATC AGC GATTCA ATCACCTGGAAAATG TERM 3431 2774319 - 2774296 - g 81 -6 -4.77698 | gap 1, opp_overlap 2774295 2774296 GAAGATGAAAACAAA CGCCGCGATGA GCA TTAT-GCGGCG ATTTACGATTACTGC SFV_2705 2774260 - 2774820 + | hypothetical protein SFV_2706 2774886 - 2775419 + | putative lysozyme SFV_2707 2775416 - 2775883 + | endopeptidase TERM 3432 2775917 - 2775934 + T 93 -10.5 -4.60797 | opp_overlap 2775917 2775914 AAGTCCATTTAATGA GCCTCGC ACTT GCGGGGC TTTTATATGTCCGCA SFV_2708 2777022 - 2776309 - | IS600 ORF2 SFV_2709 2777465 - 2777163 - | IS600 ORF1 TERM 3433 2778393 - 2778382 - H 70 -2.2 -4.99435 | opp_overlap 2778392 GGGAATAATCAAAAA CGAT GCAC ACCG GGTTTTTACCGCGTT TERM 3434 2778902 - 2778914 + H 79 -10.5 -3.53012 | opp_overlap 2778900 AGATTACAGAAACTG CCGGG TGC CCCGG TTTCGAACAAGCGAG SFV_2710 2779099 - 2779257 + | IS600 ORF1 SFV_2711 2780147 - 2779260 - | IS629 ORF2 TERM 3435 2779827 - 2779839 + g 70 -4.8 -4.56597 | GGCTTTCCGGCTGAT GGTC GTACG GACC TTTTTACCCCGGAGA SFV_2712 2780473 - 2780147 - | IS629 ORF1 SFV_2713 2780589 - 2780714 + | IS600 ORF1 SFV_2714 2780855 - 2781568 + | IS600 ORF2 SFV_2715 2781596 - 2781919 + | putative terminase small subunit TERM 3436 2782321 - 2782336 + GF 73 -4 -4.83269 | gap 1, opp_overlap 2782321 AACACCGGGATAATA CGC-TCA CAC TGAAGCG TTTTTCCTCTGGTGT TERM 3437 2783253 - 2783235 - gf 100 -6.7 -5.5112 | GCGATCAATAAAAAA TACCGCC ATGCA GACGGTA CCGAAATGACCATTT TERM 3438 2783418 - 2783404 - gf 77 -8.5 -4.12188 | opp_overlap 2783403 TCACCATGCCGAAAA CCCGC AATCA GCGGG GTGTGTATCTGTGTG TERM 3439 2783526 - 2783544 + GF 76 -3.8 -5.00616 | overlap 2783528 TCGTATGCCATCCGC TTTCCTGA TAA TCCGGAGA TTTTTTCGCAGACAG TERM 3440 2783654 - 2783638 - gf 73 -3.5 -4.77165 | TGTGGGATAACAAAA CGCGGCG TAA CGAAGCG CTGGACTGCCTGGTG SFV_2716 2781891 - 2783819 + | putative DNA packaging protein of prophage SFV_2717 2784003 - 2785058 + | head-tail preconnector gp5 TERM 3441 2785273 - 2785286 + G 75 -4.5 -4.77757 | gap 1, overlap 2785270 2785269 CGGGGGATTATTCGT C-CGCC ACG GGCGCG TTTTGATTTTTACCA TERM 3442 2785517 - 2785498 - g 72 -4.9 -4.61231 | overlap 2785499 GCAGAGCGCGAAAAA GCCGGAC TCTCAC GTCCGGT GTGGATAGCCCAGGC SFV_2718 2785111 - 2785596 + | head-tail preconnector gp5 TERM 3443 2785646 - 2785661 + G 91 -7.5 -5.07652 | CCGCTGCTTCTGGAG CCCGC CTATGC GCGGG TTTTCTTTTGCGCGC TERM 3444 2786463 - 2786428 - g 78 -11.2 -3.46824 | gap 1, overlap 2786429 GGATGAATTAATCAA TGCGTCGGACGCCATCA GCG TGATGGC-TGCGACGCT GAACACACACGATAC TERM 3445 2786462 - 2786429 - g 90 -14.7 -2.67613 | gap 1, overlap 2786428 GATGAATTAATCAAT GCGTCGGACGCCATCA GCG TGATGGC-TGCGACGC TGAACACACACGATA SFV_2719 2785586 - 2787091 + | head-tail preconnector gp5 TERM 3446 2787442 - 2787427 - g 77 -3.2 -5.07275 | GGATACACACAAAAA GGCGAA TGCC TTTGCC GGCAGTGCCCTGAGT SFV_2720 2787128 - 2787475 + | capsid protein small subunit TERM 3447 2787685 - 2787675 - g 88 -8.2 -4.652 | opp_overlap 2787675 2787677, overlap 2787666 2787676 2787677 AAATTACCGGAAAAA CGCC GGT GGCG GCCTATGTCTCCCCG TERM 3448 2788316 - 2788296 - g 93 -9.7 -4.56597 | TCGTGGTGGCAAAAA CGTCCTATG TGG CAGAGGACG GTACCGAAAAACGTT SFV_2721 2787533 - 2788561 + | major capsid protein TERM 3449 2788570 - 2788588 + F 100 -11.7 -4.88407 | opp_overlap 2788582 GAAATAATCCGTGAG CGGGAGC TAAAT GCTCCCG TTTTTCATTCAATCA SFV_2722 2788613 - 2788999 + | putative DNA-packaging protein TERM 3450 2789122 - 2789134 + G 71 -3.3 -4.77036 | GAACTTGAGGGGACA CACCT GAC AGGGG TTTTTGATGATCCCG TERM 3451 2789149 - 2789159 + G 70 -4 -4.63218 | GTTTTTGATGATCCC GAAA GTA TTTC TTTTGTTGCCGGGGG SFV_2723 2789011 - 2789364 + | putative tail attachment protein TERM 3452 2789493 - 2789457 - g 100 -15.9 -3.53811 | CGCATGGGCGGTAAA CCGTGTGGCGGCAAAGA TTG TTTCTGTCGCCACACGG CAGGTTGCGCAGAAT SFV_2724 2789374 - 2789955 + | putative tail component of prophage SFV_2725 2789952 - 2790353 + | putative tail component of prophage SFV_2726 2790364 - 2791104 + | putative tail component of prophage TERM 3453 2791124 - 2791141 + F 100 -14.1 -4.65895 | ACGATACTCATCATT GCCCCGG TTAT CCGGGGC TTTTTGCATCCGGAG SFV_2727 2791163 - 2791549 + | putative tail component of prophage TERM 3454 2791761 - 2791774 + G 74 -8.1 -4.07568 | overlap 2791737 CAGCGATGCTGCGGT GGCTG ATTT CAGCC TTTTACCGGAAGAGA SFV_2728 2791558 - 2791887 + | putative tail component of prophage TERM 3455 2792197 - 2792227 + F 75 -6.1 -4.37658 | gap 1, opp_overlap 2792216, overlap 2792216 GCAGGCCAGGGCACT GGCGG-AGGCGC AGGATAAA GCGGCTGCCGCC TTTTATCGCCAGATT TERM 3456 2792226 - 2792216 - f 74 -8.2 -3.96624 | opp_overlap 2792197 2792216 GAGGCGCAGGATAAA GCGG CTG CCGC CTTTTATCGCCAGAT TERM 3457 2792834 - 2792815 - f 90 -13.6 -3.32997 | opp_overlap 2792811, overlap 2792810 GGGCGAGAAATTTAA CCGTCAGC TGGC GCTGACGG GACATTATGCCGGTG TERM 3458 2793697 - 2793680 - f 75 -2.7 -5.14163 | gap 1, overlap 2793682 2793684 AGCCATTAAGAAAAA TACACGGG CAA CCCGTA-A TGATGAGGCCACCCG TERM 3459 2793696 - 2793682 - f 76 -7.8 -4.19587 | overlap 2793680 2793684 CCATTAAGAAAAATA CACGGG CAA CCCGTA ATGATGAGGCCACCC TERM 3460 2793694 - 2793684 - f 72 -8.2 -3.67974 | overlap 2793682 2793680 ATTAAGAAAAATACA CGGG CAA CCCG TAATGATGAGGCCAC TERM 3461 2794277 - 2794251 - f 76 -5 -4.78077 | CTGAATGAAAACAAA CGCTACTGGCAG GAA CTGGAAGTGGCG CAGGGCGACTGGAAA TERM 3462 2795096 - 2795127 + GF 100 -15.2 -3.35798 | overlap 2795092 TTTCTGGAACGGCAC GGTGGCGTCCGC GCATTTCA GTGGACGCCACC TTATGACTGGAAACT TERM 3463 2795293 - 2795279 - gf 80 -5.7 -4.94972 | GAGCAGAACGAAAAA GGTGA GCCGG TCACC TGGCAGGGGCGGCAG TERM 3464 2795455 - 2795475 + GF 90 -9.7 -4.42653 | overlap 2795457 CGGCGGAACGGTGGT CCGGCGTAA GGT TTACGCCCG TTTTCTGGATGCGGT TERM 3465 2795457 - 2795473 + GF 73 -10.9 -2.54745 | overlap 2795455 GCGGAACGGTGGTCC GGCGTAA GGT TTACGCC CGTTTTCTGGATGCG SFV_2730 2794901 - 2795842 + | minor tail protein TERM 3466 2795873 - 2795857 - gf 70 -9.5 -3.03214 | opp_overlap 2795866, overlap 2795859 AATCCATGACACAGA CAGAATC AGC GATTCTG GCGCACGCCCGGCGA TERM 3467 2795978 - 2795963 - gf 70 -10.4 -2.5474 | overlap 2795962 2795960 TCCCAGCGAGAATAT CTCCGG TGAG CCGGAG GAACGGTTCCGGATG TERM 3468 2796352 - 2796382 + GF 74 -6 -4.45945 | overlap 2796351 2796349 AGGTGCCGTTGTCAT CAGCACAACCGGGC GAT GTGCTGCTGTGCTG TTTTGGTTCATCGGT SFV_2731 2795778 - 2796590 + | tail assembly protein SFV_2732 2796554 - 2797129 + | putative tail component of prophage TERM 3469 2797146 - 2797169 + F 70 -9.6 -3.01125 | opp_overlap 2797138 2797151, overlap 2797151 GCAAAATGTTTCATG TGAAACCGCC TGCG GGCGGTTTTG TCGTTTATGGAGCGT TERM 3470 2797164 - 2797151 - f 75 -9.5 -3.60098 | opp_overlap 2797151 2797146 ATGTTTCATGTGAAA CCGCC TGCG GGCGG TTTTGTCGTTTATGG TERM 3471 2797151 - 2797164 + F 93 -9.5 -4.64846 | opp_overlap 2797151, overlap 2797146 ATGTTTCATGTGAAA CCGCC TGCG GGCGG TTTTGTCGTTTATGG TERM 3472 2797340 - 2797320 - g 71 -3.1 -4.7497 | TGGATGGATTAAAAA GCGTGCTGC TGA ACGGTACGC CGGTCCTGGACAGCG TERM 3473 2798951 - 2798926 - g 72 -9.7 -3.30441 | GAGTATCCGTGAGAA CGACGACGGCA CGTA TGCCATCACCG CCGTGCAGCATGTGC TERM 3474 2799853 - 2799824 - g 70 -6.5 -4.18367 | CAGCAGATACAGAAA GTTCAGGTTGATA CAAA TAATAACCTGAAC AGCATGTGGGCTGTG SFV_2733 2797190 - 2800669 + | host specificity protein TERM 3475 2800689 - 2800706 + F 100 -11.3 -5.4505 | opp_overlap 2800679 2800687 TATAACCCAGATACG GGCACCA GAAA TGGTGCC TTTTTTATTGCAGAA TERM 3476 2801003 - 2800975 - g 84 -3.7 -5.2112 | overlap 2800977 2800984 AAGATGAGCAAAAAA CGCATTACAGCGA TAC CCGCTGGCATGAG GATTCCGTGCGTAAC SFV_2734 2800737 - 2801336 + | putative membrane protein precursor TERM 3477 2801364 - 2801383 + F 100 -10 -4.85599 | gap 1, opp_overlap 2801364 CACAGTGTTATGACA GCCCG-CTG GTT CAGGCGGGC TTTTTGTGGGGTGAA SFV_2735 2801400 - 2802815 + | putative phage tail fiber protein SFV_2736 2802766 - 2803389 + | hypothetical protein TERM 3478 2803504 - 2803527 + T 93 -10.2 -4.58395 | opp_overlap 2803501 2803500, overlap 2803506 AAACGGATGAATCCG GGGAGGCCCG GGGG CGGGCCTCTG TTTTTCCGGAGTCAG TERM 3479 2803506 - 2803525 + T 100 -15 -3.90762 | opp_overlap 2803501 2803500, overlap 2803504 ACGGATGAATCCGGG GAGGCCCG GGGG CGGGCCTC TGTTTTTCCGGAGTC ipaH_7 2805332 - 2803569 - | invasion plasmid antigen TERM 3480 2805663 - 2805629 - R 100 -10.1 -5.24129 | opp_overlap 2805629 TGCGTTGACAAAAAA TTAGCGCAAGAGGAC AAAAA ATCACCTTGCGCTAA TGCTCTGTATCAGGT ygcO 2806112 - 2805816 - | hypothetical protein ygcN 2807338 - 2806067 - | hypothetical protein TERM 3481 2807262 - 2807251 - GR 77 -5.8 -4.71426 | overlap 2807259 2807260 GTTCGAGTAACAAAA CGGA TAAA TCCG CTCGCGCGCAGCGTA TERM 3482 2807290 - 2807259 - GR 91 -11.5 -4.08689 | overlap 2807251 2807260 AACAAAACGGATAAA TCCGCTCGCGCGC AGCGTA ACGCGCAAGCGGT GCCTGCAATACCGGC TERM 3483 2807289 - 2807260 - GR 93 -15 -3.03587 | overlap 2807251 2807259 ACAAAACGGATAAAT CCGCTCGCGCGC AGCGTA ACGCGCAAGCGG TGCCTGCAATACCGG TERM 3484 2807438 - 2807450 + r 89 -9.1 -4.67048 | opp_overlap 2807435 2807437, overlap 2807433 CCGCGATAGATACAC CCTGC GGT GCAGG TTTCTTTTACCATCA ygcM 2807865 - 2807416 - | putative 6-pyruvoyl tetrahydrobiopterin synthase TERM 3485 2807870 - 2807850 - G 70 -6.2 -4.21194 | TCGCATTATCTAAAA CGACTTTG TTGCG CAAAATCG CTGATTTATCTTAAT TERM 3486 2808188 - 2808202 + G 70 -7.1 -4.0056 | overlap 2808196 CCGATTTAACGCCTA CCCAG CTTGC CTGGG TTTCTGGCTATTTCT cysJ 2808097 - 2809896 + | sulfite reductase subunit alpha TERM 3487 2810715 - 2810692 - g 80 -5.2 -4.90079 | gap 1, opp_overlap 2810693, overlap 2810693 2810696 ACGGTAACAAGAAAA CCTACGCCCGC ACG GCGAGCG-AGT TTGGCTATCTGCCGC TERM 3488 2810712 - 2810696 - g 75 -11.5 -2.88634 | opp_overlap 2810693, overlap 2810693 2810692 TAACAAGAAAACCTA CGCCCGC ACG GCGAGCG AGTTTGGCTATCTGC TERM 3489 2811224 - 2811253 + G 95 -11.5 -4.37092 | gap 1, overlap 2811214 2811213 GACTTGCCCGCTGGC GATGGC-GGAAGCG GAG CGTTTCCTGCCGTC TTTTATCGACAACAT cysI 2809896 - 2811608 + | sulfite reductase subunit beta cysH 2811682 - 2812416 + | phosphoadenosine phosphosulfate reductase TERM 3490 2812437 - 2812462 + F 100 -9.7 -5.45802 | opp_overlap 2812437 GCCGGATAAATTAAA CGCCTCTGTCA GAAA TGATGGGGGCG TTTTTATTTTGCGAG TERM 3491 2812623 - 2812593 - f 86 -9.1 -4.45083 | gap 1, opp_overlap 2812592 2812619 TCCAGATGGACAAAA GCCCCAGG-CGATA TTTC TATCAACCTGAGGC TCGCGTTCGAACGTA TERM 3492 2813719 - 2813730 + G 71 -2.2 -5.0133 | GCAGACTGGACAGGG TCGT CAAC GCGA TTTTTTCCACGCGTC SFV_2744 2813068 - 2814177 + | hypothetical protein iap 2815300 - 2814263 - | alkaline phosphatase isozyme conversion aminopeptidase TERM 3493 2815400 - 2815412 + H 76 -4.8 -4.88228 | opp_overlap 2815388 AACGCCCGAAATCCG GTGC CTTAA GCAC TTTTTGATATTAGCT cysD 2815552 - 2816460 + | sulfate adenylyltransferase subunit 2 TERM 3494 2817326 - 2817342 + G 72 -5.8 -4.32034 | opp_overlap 2817326 GGTGTGGAATCAAAC GTCGCG CGGAT CGTGAC TTTTGATGGTGATCG cysN 2816462 - 2817889 + | sulfate adenylyltransferase subunit 1 TERM 3495 2817943 - 2817984 + G 71 -9.5 -3.55071 | gap 1, opp_overlap 2817946 2817955, overlap 2817949 2817952 CCGGTCACTGTGCAA CAACGCGAACTACACCACGG TCA TCGTGGTGTAGTGC-TGTGG TTTACCGGCCTCTCC TERM 3496 2817983 - 2817946 - g 73 -9.2 -3.62597 | gap 1, opp_overlap 2817943 2817949 2817952, overlap 2817955 GTCACTGTGCAACAA CGC-GAACTACACCACG GTCAT CGTGGTGTAGTGCTGTG GTTTACCGGCCTCTC TERM 3497 2817949 - 2817979 + G 93 -14.8 -3.00525 | opp_overlap 2817946 2817955, overlap 2817943 2817952 ACTGTGCAACAACGC GAACTACACCACGG TCA TCGTGGTGTAGTGC TGTGGTTTACCGGCC TERM 3498 2817952 - 2817976 + G 90 -15.1 -2.7314 | opp_overlap 2817946 2817955, overlap 2817949 2817943 GTGCAACAACGCGAA CTACACCACGG TCA TCGTGGTGTAG TGCTGTGGTTTACCG cysC 2817889 - 2818494 + | adenylylsulfate kinase ygbE 2818544 - 2818867 + | hypothetical protein TERM 3499 2818978 - 2818956 - f 74 -11.4 -2.82142 | opp_overlap 2818954, overlap 2818955 GGTATACGTAACAAT GGACAAATGT GGT ACATTTGCCC GCGTTGTCGCGGTAT ftsB 2819061 - 2819372 + | cell division protein FtsB TERM 3500 2819426 - 2819438 + G 73 -9.1 -3.57462 | TGTTTGCGCCGTGGT TCCGG CGG CCGGA TTTGGCCGTCGAATG ispD 2819391 - 2820101 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispF 2820101 - 2820580 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase truD 2820577 - 2821626 + | tRNA pseudouridine synthase D surE 2821562 - 2822368 + | stationary phase survival protein SurE TERM 3501 2822849 - 2822823 - g 70 -10.9 -2.72511 | overlap 2822822 GGCACCGCCGGAAAT TCCAACTGCGC TAATG ACGCAGCTGGA CGAAGGCGGGATTCT pcm 2822362 - 2822988 + | protein-L-isoaspartate O-methyltransferase TERM 3502 2823159 - 2823171 + G 86 -10.5 -3.96224 | CAAAATTCACCGTTC GCCGC ATT GCGGC TTTGTCACTGGTTTC TERM 3503 2823532 - 2823509 - g 83 -5.3 -5.04385 | TATACCGTGAAAAAA GGCGACACA CTTTTC TATATCGCC TGGATTACTGGCAAC TERM 3504 2823803 - 2823789 - g 72 -5 -4.65078 | AGAGTGCTAACAAAA TGTTGC CGA ACAACA AGCCAACTGCGACCA TERM 3505 2824006 - 2824025 + G 70 -7 -4.12254 | opp_overlap 2824005 AGGACAGGCAATTAT CGCGACCG CAGA TGGCCGCG TTGTTTATGCTGGTA nlpD 2823128 - 2824267 + | lipoprotein NlpD rpoS 2824330 - 2825322 + | RNA polymerase sigma factor RpoS TERM 3506 2825364 - 2825341 - T 95 -12.4 -3.87075 | opp_overlap 2825341 AGCATCTGTCAGAAA GGCCAGTCTC AAGC GAGGCTGGCC TTTTTCTTTTGTTTG TERM 3507 2825341 - 2825364 + T 100 -14.6 -5.67711 | opp_overlap 2825341 AGCATCTGTCAGAAA GGCCAGTCTC AAGC GAGGCTGGCC TTTTTCTTTTGTTTG SFV_2758 2825849 - 2825442 - | putative transcriptional regulator TERM 3508 2825611 - 2825589 - G 70 -6.9 -4.06678 | opp_overlap 2825590 2825590, overlap 2825590 AGTCAGCCAGACAAA GCGTCGCCG CTTGT CAGCGACGT CATGTTCACGTCTGA TERM 3509 2825873 - 2825887 + H 85 -6.4 -5.14563 | overlap 2825874 CGGGCTAATTCTCTG TCGCTA TCA TAGCGG TTTTTTAGTGACGAA SFV_2759 2825996 - 2826589 + | phenylacrylic acid decarboxylase-like protein yclC 2826589 - 2827539 + | putative 4-hydroxybenzoate decarboxylase SFV_2761 2828372 - 2827809 - | putative regulatory protein TERM 3510 2828467 - 2828435 - H 83 -6.4 -5.0809 | gap 1, opp_overlap 2828435 2828437, overlap 2828437 AATAAACCATAAAAA CACCAAAGA-ACCCT TTGC AGGGAATCTTTGGTA TCTTAATCTTTATCC TERM 3511 2828465 - 2828437 - H 71 -6.8 -4.13732 | gap 1, opp_overlap 2828437 2828435, overlap 2828435 TAAACCATAAAAACA CCAAAGA-ACCCT TTGC AGGGAATCTTTGG TATCTTAATCTTTAT TERM 3512 2828477 - 2828516 + H 93 -10.8 -4.4715 | TTGGTATCTTAATCT TTATCCATACGGATATCC GACC GGATATCCGCGCGGGTAA TTTTGTAGGTTAAAG TERM 3513 2828704 - 2828693 - H 89 -4.4 -5.69793 | opp_overlap 2828693, overlap 2828686 2828700 ACACCAAACAAAAAA TACG AACG CGTA ATTTCTGACGCTATA SFV_2762 2828790 - 2830811 + | putative phage transposase TERM 3514 2830840 - 2830821 - T 100 -10 -5.7946 | opp_overlap 2830821 2830823 GCCTGAATAAAAAAA CAGTCCGC GGGA ACGGACTG TTAAATAAAGGAAAC SFV_2763 2831664 - 2830951 - | IS600 ORF2 SFV_2764 2832031 - 2831819 - | putative IS1 encoded protein insB 2832106 - 2832609 + | IS1 ORF2 SFV_2766 2832884 - 2832603 - | IS600 ORF1 SFV_2767 2834074 - 2833166 - | putative dehydrogenase TERM 3515 2834192 - 2834156 - H 73 -11.2 -2.63301 | opp_overlap 2834167, overlap 2834167 GATATGGTGAGATGA TTCACATAAATTAACA TTTTG TGTTATTTTATGTGAA CTAAGCGTTAGTTGC TERM 3516 2834757 - 2834775 + G 93 -8.9 -5.0065 | CGACCATGCTGCGCA GCCTGAT GATTG ATCAGGC TTTTATTTCTGCATC ygbI 2834306 - 2835037 + | putative DEOR-type transcriptional regulator TERM 3517 2835746 - 2835781 + T 100 -10.6 -5.38326 | TAGATGGCATGGTTT TACCCTGTAAAATAAG CTTT CCTATTATACAGGGTA TTTTTATTTGATTCG TERM 3518 2835839 - 2835813 - T 78 -11.7 -3.01924 | opp_overlap 2835813 CAGTTGTCGTTAATA TTCCCGATAGC AAAAG ACTATCGGGAA TTGTTATTACACCAG TERM 3519 2835813 - 2835839 + T 87 -11 -3.9461 | opp_overlap 2835813 CAGTTGTCGTTAATA TTCCCGATAG CAAAAGA CTATCGGGAA TTGTTATTACACCAG mutS 2838407 - 2835846 - | DNA mismatch repair protein TERM 3520 2835926 - 2835943 + g 72 -6.3 -4.31433 | gap 1 CGAGATTTTCCAGTG CTTCGACC GCA GG-CGAAG TTTCTTCTGGCACTG TERM 3521 2836815 - 2836832 + g 70 -4.1 -4.62069 | opp_overlap 2836817 CAACAGCAGGTCGAA CAGCTCT TCAT AAAGCTG TTTTTCCAGTGCCAG TERM 3522 2837822 - 2837834 + g 72 -10.5 -3.05463 | GCGGGCGACGGCGCA GGCCG CGA CGGCC TTCAATCAGCGACAT ygbA 2838694 - 2839047 + | hypothetical protein TERM 3523 2839049 - 2839076 + T 93 -12 -3.6715 | opp_overlap 2839047 2839050, overlap 2839048 2839050 2839071 AACCTCGTGAATAGT ATGCCGGACAGG CAGA TCTGTCCGGCAA TTTGCAGTTAAATCA TERM 3524 2839050 - 2839075 + T 93 -15.5 -2.79968 | opp_overlap 2839047 2839050, overlap 2839048 2839049 2839071 ACCTCGTGAATAGTA TGCCGGACAGG CAGA TCTGTCCGGCA ATTTGCAGTTAAATC TERM 3525 2839075 - 2839050 - T 86 -14.8 -2.73994 | opp_overlap 2839048 2839050 2839049 2839071, overlap 2839047 ACCTCGTGAATAGTA TGCCGGACAG GCAGAT CTGTCCGGCA ATTTGCAGTTAAATC fhlA 2841162 - 2839084 - | formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons TERM 3526 2839568 - 2839580 + g 85 -3.3 -5.44119 | overlap 2839569 TCGCTACGGAACTCT CGGTC GGC GACCA TTTTTTTCAGATCGC TERM 3527 2840994 - 2841046 + g 77 -10 -3.60792 | gap 2, opp_overlap 2840984 2841018 2841020 AATAAGACGCACGTT GAG-TCTGCGCTTGCC-ACAACAC AATAGCC GCGTTGTCGGCGAGCGCAGAACGC TTTACCAGTTGCGAA TERM 3528 2841081 - 2841065 - G 72 -10.1 -3.35775 | overlap 2841063 ACCAGTTGCGAAAGA GCCTCAC ACA GCGAGGC CAGATCGGGCTGCTG TERM 3529 2841196 - 2841180 - R 100 -13.7 -3.72576 | TGTTCTTCCAGGAAA GCACCGC AAA GCGGTGC AAAAGGTCATTGACT hypE 2842204 - 2841236 - | hypothetical protein hypD 2843364 - 2842243 - | hydrogenase isoenzyme HypD TERM 3530 2842751 - 2842730 - G 72 -5.9 -4.36914 | TCGCTGGCGATAAAA TTATAGGCA TCAG TGCCGATAA CCATACTAACGTGGC TERM 3531 2843015 - 2843025 + g 72 -6.8 -4.18018 | ACGATGCGCACATCG GCAC CGC GTGC TTTTGCCTGCAACAG hypC 2843636 - 2843364 - | hydrogenase isoenzymes formation protein TERM 3532 2843514 - 2843478 - G 77 -10.2 -3.60296 | gap 1, overlap 2843483 TACGCTCATGGCAAA GCCA-ACGTGAACCAGT ACCC ACTGGCCCACGCGCGGC TGACCGTTTTCATCG TERM 3533 2843508 - 2843483 - G 80 -11.9 -3.28497 | overlap 2843478 TCATGGCAAAGCCAA CGTGAACCAGT ACCC ACTGGCCCACG CGCGGCTGACCGTTT hypB 2844499 - 2843627 - | hydrogenase nickel incorporation protein HypB TERM 3534 2844223 - 2844236 + g 75 -4.5 -4.82901 | GCGCGCGGTTGCGTT CAGCC AGAC GGTTG TTTTTGTCCAGCACG hypA 2844853 - 2844503 - | hydrogenase nickel incorporation protein hycA 2845065 - 2845526 + | formate hydrogenlyase regulatory protein HycA TERM 3535 2845548 - 2845562 + F 82 -11.4 -3.57263 | opp_overlap 2845497 GCTTTGCCCGTTTTG CAGGCG TTA CGCCTG TTTGGGGATGGGCGT TERM 3536 2845575 - 2845613 + F 79 -8.3 -4.2558 | gap 1 CTGTTTGGGGATGGG CGTGTCGATG-AGTGTCG AAAA TGACATTTCATCGGCATG TTTTCGTCAAAAATG TERM 3537 2845800 - 2845783 - g 71 -2.7 -4.86621 | gap 1, opp_overlap 2845786, overlap 2845786 2845787 ATGCTCAATGAAAAA GAATCTGC GCC GCAG-CTC TGTCACCACTGTGAA hycB 2845651 - 2846262 + | small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) hycC 2846431 - 2847969 + | formate hydrogenlyase subunit 3 hycD 2847972 - 2848895 + | membrane-spanning protein of hydrogenase 3 (part of FHL complex) hycE 2848913 - 2850622 + | large subunit of hydrogenase 3 (part of FHL complex) hycF 2850632 - 2851174 + | formate hydrogenlyase complex iron-sulfur subunit hycG 2851174 - 2851941 + | hydrogenase activity hycH 2851938 - 2852348 + | processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex) TERM 3538 2852485 - 2852475 - g 70 -6.8 -4.14243 | TAGTGCACCGGAAAA CGAC ATC GTCG CCATCCGTGAACTGC hycI 2852374 - 2852811 + | hydrogenase 3 maturation protease TERM 3539 2853465 - 2853476 + G 77 -7.2 -4.48987 | CAAGTTAAGCTATCC CGCG CTCA CGCG TTTTACTTATACCCC SFV_2787 2852836 - 2853597 + | putative periplasmic or exported protein TERM 3540 2854306 - 2854296 - g 74 -8.2 -3.88787 | opp_overlap 2854290 2854298 2854305 GCAGAGTTCGACAAA GCCG TTG CGGC AATGCCTGTTGGCGT SFV_2788 2854077 - 2854496 + | hypothetical protein TERM 3541 2854570 - 2854606 + T 70 -9.4 -3.43338 | gap 1, opp_overlap 2854582, overlap 2854572 2854572 GTCGCACGAACTATG TAG-GCCGGATAAGGCG TTCA CGCCGCATCCGGCACTG TTACTTACTCTAAAT TERM 3542 2854572 - 2854604 + T 71 -9.8 -3.28487 | gap 1, opp_overlap 2854582, overlap 2854570 2854572 CGCACGAACTATGTA G-GCCGGATAAGGCG TTCA CGCCGCATCCGGCAC TGTTACTTACTCTAA ascB 2856035 - 2854611 - | cryptic 6-phospho-beta-glucosidase TERM 3543 2855258 - 2855247 - G 84 -3.6 -5.29782 | CACATCGATAAAAAA CAGG TTTT CCCG ATCTTTCTCCAGCGC TERM 3544 2855712 - 2855701 - G 71 -2.2 -4.93898 | overlap 2855687 ACAGGACGATAAAAA GCAA TGCC CTGC TGATTGGGCGTGATT ascF 2857501 - 2856044 - | cellobiose/arbutin/salicin-specific PTS system components IIBC TERM 3545 2856953 - 2856930 - G 75 -5.2 -4.66318 | opp_overlap 2856951, overlap 2856932 2856948 ATCAGTTCAATAAAA CTCGGATGTA CCAG CACACCCGCG ATGGCAATCGCCAGC ascG 2857758 - 2858771 + | ascBF operon repressor TERM 3546 2858784 - 2858813 + F 91 -7.9 -5.18357 | opp_overlap 2858776 2858786, overlap 2858786 TAAACATTGTCATCA CATGTCATCGTCA CTAG TGTCGATGACATC TTTTTTCCTGCATTA TERM 3547 2858811 - 2858786 - f 72 -10.5 -2.79679 | opp_overlap 2858786 2858784, overlap 2858776 AACATTGTCATCACA TGTCATCGTCA CTAG TGTCGATGACA TCTTTTTTCCTGCAT TERM 3548 2858786 - 2858811 + F 90 -10.5 -4.2131 | opp_overlap 2858776 2858786, overlap 2858784 AACATTGTCATCACA TGTCATCGTCA CTAG TGTCGATGACA TCTTTTTTCCTGCAT TERM 3549 2859435 - 2859421 - g 95 -9.2 -4.85599 | opp_overlap 2859420 2859421 CTGAGCGCAGAAAAA CGCCGC CGT ACGGCG CTGATGTTCTAAAAA hydN 2858920 - 2859447 + | electron transport protein HydN TERM 3550 2859621 - 2859611 - g 77 -3.2 -5.09426 | opp_overlap 2859618 CTCAATGGCAAAAAA CACA TCT TGCG GTGTCCAACTGCGTA TERM 3551 2861253 - 2861267 + G 90 -11.4 -3.86346 | opp_overlap 2861247 2861246 TGGCGAAACCTGCTG GCGCAG TGC CTGCGC TTTGTGCCGGAGTGG hypF 2859600 - 2861852 + | transcriptional regulatory protein TERM 3552 2861926 - 2861959 + T 83 -9.5 -4.08216 | opp_overlap 2861895 2861894 2861936 2861938 2861939, overlap 2861927 ACATGCGTCCCCGTA GGTCGGATAAGACGC GCCA GCGTCGCATCCGACA TTTTAGGCACAGTAG TERM 3553 2861927 - 2861958 + T 82 -13 -3.04715 | opp_overlap 2861895 2861894 2861936 2861938 2861939, overlap 2861926 CATGCGTCCCCGTAG GTCGGATAAGACGC GCCA GCGTCGCATCCGAC ATTTTAGGCACAGTA ygbD 2863113 - 2861980 - | nitric oxide reductase TERM 3554 2862367 - 2862392 + g 90 -13.3 -3.53224 | gap 1, opp_overlap 2862351 GCCGCGATTAATCGT CAGCCC-GGCGC GTC GTGCCAGGGCTG TTTCCGGGCGCAGTC TERM 3555 2862805 - 2862781 - G 72 -7.8 -3.87373 | opp_overlap 2862782, overlap 2862782 CACAGGCGGGACAAA GGCGCTGGCA CCGGT TGCCAGCACT AACTTGTCGTATTGC TERM 3556 2862804 - 2862782 - G 75 -11.3 -2.92102 | opp_overlap 2862782, overlap 2862781 ACAGGCGGGACAAAG GCGCTGGCA CCGGT TGCCAGCAC TAACTTGTCGTATTG TERM 3557 2862938 - 2862917 - G 77 -12.3 -2.72043 | overlap 2862916 2862904 AACTGCCCGGCAAAT TCACCCGCC GTCT GGCGGGTAA GGTCGTCGGCACGTT SFV_2795 2864549 - 2863110 - | anaerobic nitric oxide reductase flavorubredoxin TERM 3558 2864450 - 2864464 + g 84 -7.8 -4.68724 | overlap 2864451 GGTAGCTGTTGTAGC TGCTGC CGC GCAGCG TTTTATATTCCGTGC ygaA 2864736 - 2866250 + | anaerobic nitric oxide reductase transcription regulator gutQ 2867212 - 2866247 - | D-arabinose 5-phosphate isomerase TERM 3559 2867014 - 2867001 - G 100 -3.7 -5.64274 | overlap 2867002 GGATGGACAAAAAAA GCCGG TGTG CCGGT ACTGGCAAGTGTTGC srlR 2867978 - 2867205 - | DNA-bindng transcriptional repressor SrlR TERM 3560 2867284 - 2867308 + g 78 -10.8 -3.55444 | opp_overlap 2867268 GCCGGATCGATACCT GCGTCGGTAA TTAGC TTATCGACGC TTTCAAGACTGCAAA gutM 2868404 - 2868045 - | DNA-binding transcriptional activator GutM TERM 3561 2868439 - 2868465 + r 100 -15.2 -3.57651 | GGCGGAAGTCCTGTA TGCCTGATGAGC GTA GCGCATCAGGCA TTCTATAGTCTCACG TERM 3562 2868477 - 2868504 + r 74 -10.7 -3.14564 | gap 1, overlap 2868474 GGCATTCTATAGTCT CA-CGGAGATCC TTAAC GGATCTCCGCTG TTGATCAGAACATCA srlD 2869288 - 2868509 - | sorbitol-6-phosphate dehydrogenase srlB 2869663 - 2869292 - | glucitol/sorbitol-specific PTS system component IIA TERM 3563 2870267 - 2870286 + r 77 -3.6 -5.093 | overlap 2870244 AGGGTTGTGGTGTCG CATCAC CCACTACA GTGATG TTTTCTTCTTTTACG srlA 2871192 - 2870629 - | PTS system, glucitol/sorbitol-specific IIC component, one of two TERM 3564 2870978 - 2870965 - G 82 -8.1 -4.45771 | overlap 2870959 ATTGCAAAAGACAAA CGTGC CAAT GCACG GTAACAGTAGGTAAC mltB 2871388 - 2872533 + | murein hydrolase B TERM 3565 2872533 - 2872577 + F 84 -5 -5.28778 | gap 1, opp_overlap 2872544 GGCGCGAGTACAGTA GCT-ATTTACAAGAGGGGGGC GTGA GCTTCCCTCTGGCTAATCAGC TTTTTTCTGAATCCT ygaD 2872678 - 2873175 + | competence damage-inducible protein A TERM 3566 2873514 - 2873475 - g 100 -14.4 -4.08064 | gap 1, opp_overlap 2873510, overlap 2873476 AATCTTCCGGTAAAA CCACGCTGACGCTGCAG GTGATCG CCGCAGCG-CAGCGTGA AGGTAAAACCTGTGC TERM 3567 2873513 - 2873476 - g 95 -15.7 -3.04517 | gap 1, opp_overlap 2873510, overlap 2873475 ATCTTCCGGTAAAAC CACGCTGACGCTGCAG GTGATCG CCGCAGCG-CAGCGTG AAGGTAAAACCTGTG recA 2873255 - 2874316 + | recombinase A TERM 3568 2874511 - 2874528 + F 88 -8.3 -4.86862 | opp_overlap 2874510 TTATCAGCAAAACCT GGGGCGC ATCT GCGGCCC TTTTGCTTTTTTAAG recX 2874559 - 2875059 + | recombination regulator RecX alaS 2875187 - 2877817 + | alanyl-tRNA synthetase csrA 2878052 - 2878237 + | carbon storage regulator yqaB 2879155 - 2879721 + | fructose-1-phosphatase SFV_2815 2879718 - 2880146 + | hypothetical protein gshA 2880219 - 2881775 + | glutamate--cysteine ligase TERM 3569 2881806 - 2881789 - f 100 -11.3 -5.58522 | GACAGAAAAGAAAAA GGCCACT CGGG AGTGGCC AAAATTTCATCTCTG ygaG 2881925 - 2882440 + | S-ribosylhomocysteinase TERM 3570 2882493 - 2882474 - T 100 -12.2 -5.1848 | opp_overlap 2882470 2882474 AATTAATTGAAAAAA GCCAGTTC AAAT GAACTGGC TTAGTTGTACTTAGT TERM 3571 2882474 - 2882493 + T 88 -12.2 -3.50422 | opp_overlap 2882474, overlap 2882470 AATTAATTGAAAAAA GCCAGTTC AAAT GAACTGGC TTAGTTGTACTTAGT emrB 2884042 - 2882504 - | multidrug resistant protein emrB TERM 3572 2884820 - 2884831 + r 80 -5.8 -5.03314 | AGTCGCTTTGTGCTT TCGC GAGG GCGA TTTTTTGCACCTCAA TERM 3573 2885310 - 2885287 - R 100 -12.5 -4.56597 | opp_overlap 2885274 2885286 2885285 2885283 CCTGCTTGCCAAAAA GGCCAGCAT GTTGCG ATGCTGGCC GGTCATTTTTTCTTT emrR 2885888 - 2885358 - | transcriptional repressor MprA TERM 3574 2885559 - 2885572 + g 70 -6.7 -4.11484 | CAGATGCAGGCAGCG GCGAT CGTT ATCGC TTTTACGACGTTCGA ygaH 2886314 - 2885979 - | hypothetical protein TERM 3575 2886077 - 2886067 - G 70 -6.8 -4.03234 | CGTGTTTTATAGAAA CTGG CAC CCAG TACCGCGAAGCCGAC SFV_2822 2887041 - 2886304 - | hypothetical protein TERM 3576 2886699 - 2886713 + g 77 -7 -4.4874 | opp_overlap 2886700, overlap 2886700 CATCCGTCAGGCCAA ACGCCC ATA GGGCGG TTTTCGATTTTTGCA TERM 3577 2886712 - 2886700 - G 81 -10.5 -3.60098 | opp_overlap 2886699 2886700 ATCCGTCAGGCCAAA CGCCC ATA GGGCG GTTTTCGATTTTTGC TERM 3578 2886700 - 2886712 + g 76 -10.5 -3.28159 | opp_overlap 2886700, overlap 2886699 ATCCGTCAGGCCAAA CGCCC ATA GGGCG GTTTTCGATTTTTGC SFV_2823 2888305 - 2887385 - | major facilitator superfamily permease TERM 3579 2888526 - 2888494 - R 84 -14.2 -2.87132 | gap 1, opp_overlap 2888505 GGCGTTGTGTACAGA GCGGCGGATGAGGCG AAAA CGCCTTATCCGCC-C GAATAAAAATTACTT proX 2889528 - 2888536 - | glycine betaine transporter periplasmic subunit TERM 3580 2888707 - 2888722 + g 71 -3.2 -4.87665 | opp_overlap 2888698, overlap 2888709 CATAATGGCAAACAG TTTGGC TGCC GCCGGA TTTTTCTCGGTCCAG TERM 3581 2889576 - 2889558 - R 85 -12.4 -3.31144 | TTGGCAGGGTGATAA TGCCCGGC GTC ACCGGGCA AGTGCAGAGTTACTT proW 2890650 - 2889586 - | glycine betaine transporter membrane protein proV 2892046 - 2890643 - | glycine betaine transporter ATP-binding subunit TERM 3582 2892085 - 2892061 - R 87 -7.2 -5.14477 | TAGATAGCGAAAAAA CGCCTGAA TATTGTAGT TTCAGGCG AATAATGCAACAGAG nrdF 2893159 - 2892200 - | ribonucleotide-diphosphate reductase subunit beta nrdE 2895313 - 2893169 - | ribonucleotide-diphosphate reductase subunit alpha TERM 3583 2894019 - 2893992 - GR 95 -14.2 -3.54129 | gap 1, overlap 2893993 GACACCGCCGTTAAA CCGCGCACGGCAG TCT CTACCGTGCG-GG AAAAATCGGGGGAAT TERM 3584 2894019 - 2893993 - GR 90 -14.4 -2.72263 | overlap 2893992 ACACCGCCGTTAAAC CGCGCACGGCAG TCT CTACCGTGCGGG AAAAATCGGGGGAAT TERM 3585 2894791 - 2894781 - GR 79 -2.4 -5.17353 | ATACGCAGCAAAAAA CAGG AAA CCAG TTCGCCGCGCTGCTG nrdI 2895696 - 2895286 - | ribonucleotide reductase stimulatory protein nrdH 2895947 - 2895693 - | glutaredoxin-like protein TERM 3586 2896155 - 2896135 - R 100 -12.6 -4.89063 | opp_overlap 2896153 CCAGGCAAAAAGAAA CCCCGAAG ACAGG CTTCGGGG TCAAAGACGCGTATT ygaM 2896516 - 2896187 - | hypothetical protein TERM 3587 2896846 - 2896836 - g 70 -5.4 -4.43681 | overlap 2896839 2896840 2896843 CATCCAACATTAAAA GAAC GCA GTTC AACACTGGCTGAACC ygaC 2896668 - 2897012 + | hypothetical protein TERM 3588 2897040 - 2897014 - T 93 -12.2 -3.68619 | overlap 2897016 GCGAAGCCAGTTAAA GACGCGACTGGC GAT GCCAGTCGCGAA AAGAAGAGTCAGGCT TERM 3589 2897038 - 2897016 - T 100 -19.2 -3.42283 | overlap 2897014 GAAGCCAGTTAAAGA CGCGACTGGC GAT GCCAGTCGCG AAAAGAAGAGTCAGG SFV_2833 2897498 - 2897049 - | hypothetical protein TERM 3590 2898452 - 2898435 - g 83 -6.2 -5.00616 | overlap 2898437 CGTGCTGGTAAAAAA CGCCAG CCGCGT CCGGCG AAATATAAATTCACT stpA 2898168 - 2898572 + | DNA binding protein, nucleoid-associated ygaP 2899143 - 2898619 - | hypothetical protein SFV_2836 2899452 - 2899153 - | hypothetical protein TERM 3591 2899584 - 2899596 + H 78 -6.3 -4.58395 | AATTACTACGCTTAA GAGAT AAA ATCTC TTTTTAAACAATGAG SFV_2837 2899635 - 2899793 + | hypothetical protein TERM 3592 2899809 - 2899828 + F 81 -12.8 -3.29649 | ACCTGTGCTCACCCC CGCGGCGT TAAC GCGCCGCG TTCCTCTGCTACACT TERM 3593 2900261 - 2900247 - g 71 -2.8 -4.77567 | overlap 2900249 ATCTGTACAATAAAA TCTTCG AAG CGAATA AACCGATGCTAAAAA TERM 3594 2900299 - 2900277 - g 100 -10.6 -4.63184 | overlap 2900264 2900278 AACCGATGCTAAAAA GCCCGGATAA AAT TTATCCGGGG CAAGTGTTGCGTATT TERM 3595 2900298 - 2900278 - g 95 -14.1 -3.37188 | overlap 2900264 2900277 ACCGATGCTAAAAAG CCCGGATAA AAT TTATCCGGG GCAAGTGTTGCGTAT ygaU 2899877 - 2900326 + | hypothetical protein ygaE 2900989 - 2900327 - | DNA-binding transcriptional regulator CsiR TERM 3596 2900784 - 2900761 - G 70 -6.8 -4.07568 | gap 1, overlap 2900763 CGCGGGCGTCGAAAA TATC-GAGCAG CTC CTGCTCTGACA TAGACGCCACCCGAT gabP 2902410 - 2901010 - | gamma-aminobutyrate transporter TERM 3597 2902561 - 2902590 + r 90 -14.3 -3.25072 | opp_overlap 2902559 2902578, overlap 2902570 2902585 GTTCACGTACAGATT GTCGGATGCGGCG TAAA CGCCTTATCCGAC TTGGATTCTCGTAGG TERM 3598 2902626 - 2902614 - R 70 -9.1 -3.30124 | opp_overlap 2902619, overlap 2902578 2902616 2902617 TCGTAGGCCGGACAA GACGC GCA GCGTC GCCTCCTGCATGGGG TERM 3599 2902619 - 2902651 + r 73 -11.2 -2.74012 | opp_overlap 2902614 2902616 2902617 GGCCGGACAAGACGC GCAGCGTCGCCTCC TGCAT GGGGGCGGTGCTAC TGCTTCGCCTCATCA gabT 2903907 - 2902648 - | 4-aminobutyrate aminotransferase TERM 3600 2903531 - 2903567 + g 70 -4.2 -4.61527 | opp_overlap 2903531, overlap 2903520 2903532 TACTCGCCGCTAAAA GCGATGGTGCCGCTAC GTTTG GTGGCGGCGCGGGCGA TTTTTACCGCGTTTT TERM 3601 2904885 - 2904833 - R 100 -15.6 -3.50393 | gap 2, opp_overlap 2904870 2904882 CGCCAGCGCAGAGAA CGGCGTCTGACTGGCGGGCTTCAGCA CCA TGGTGCAGCCTGCC-GCCAG-CGCCG GACCGGCTTTACGGG TERM 3602 2905297 - 2905319 + r 79 -10.6 -3.65046 | overlap 2905281 CGCCGTTCGCCGGAT TGGTGACGTC GAT GACTTCACCA TTGTTGGCGTCCAGC ygaF 2906681 - 2905413 - | hypothetical protein TERM 3603 2906052 - 2906034 - G 70 -5.2 -4.38927 | opp_overlap 2906005, overlap 2906007 CGGGCAGATAATAAA GCCCGG TTCGAGG CCGAGC ATTTTCACCAGCCGG TERM 3604 2906125 - 2906145 + g 71 -2.6 -4.9218 | overlap 2906123 2906130 TATTCACCGCCCTGA CGG-GTGCGT ATC AC-CACGCCG TTTTTATGCTCACTG SFV_2844 2907783 - 2906701 - | hypothetical protein TERM 3605 2907057 - 2907040 - G 71 -9.1 -3.53012 | CGGCGGCGCGGCAAA GCGCATC GGGC GACGCGC CAGTGGATGGCGGAA TERM 3606 2908008 - 2907971 - R 71 -7 -4.10552 | opp_overlap 2907971, overlap 2907973 2907975 2907976 2907978 CGTTAGTAAACTAAA CATATTATCTGCCCCG TTTTAT CGGGGCAGATATAACA TTAAATTATAAATAG TERM 3607 2908005 - 2907973 - R 82 -11.5 -3.64541 | gap 1, opp_overlap 2907971, overlap 2907971 2907975 2907976 2907978 TTAGTAAACTAAACA TATTATCTGCCCCG TTTTAT CGGGGCAGATA-TA ACATTAAATTATAAA TERM 3608 2908004 - 2907975 - R 85 -12.2 -3.39117 | opp_overlap 2907971, overlap 2907973 2907971 2907976 2907978 AGTAAACTAAACATA TTATCTGCCCCG TTTTAT CGGGGCAGATAT AACATTAAATTATAA TERM 3609 2908003 - 2907976 - R 90 -15.7 -2.62386 | opp_overlap 2907971, overlap 2907975 2907973 2907971 2907978 GTAAACTAAACATAT TATCTGCCCCG TTTTAT CGGGGCAGATA TAACATTAAATTATA TERM 3610 2908001 - 2907978 - R 84 -13.9 -2.83953 | opp_overlap 2907971, overlap 2907976 2907975 2907973 2907971 AAACTAAACATATTA TCTGCCCCG TTTTAT CGGGGCAGA TATAACATTAAATTA SFV_2845 2910266 - 2908014 - | putative enzyme TERM 3611 2910241 - 2910251 + g 75 -6.8 -4.37092 | TCGATAGGTAAATTT CCAG GTC CTGG TTTTATAGAAAACAT TERM 3612 2911114 - 2911093 - R 100 -11.6 -5.03715 | opp_overlap 2911092 2911091 AGTACCTGGAAAAAA TGCCCGCT ATGCCA AGCGGGCA AATTGATCCTACCCA SFV_2847 2912014 - 2911148 - | IS3 ORF2 TERM 3613 2911737 - 2911764 + g 75 -4.7 -4.74103 | overlap 2911712 2911712 GCCTTTGCCCTCAGT CCCTGACGGCG CAGGCT TGCCGCCACGG TTTTTACGTTAAAGG SFV_2848 2912310 - 2912011 - | IS3 ORF1 TERM 3614 2912129 - 2912146 + g 79 -4.1 -5.02606 | ATCTCCAGTTCACGT TCAGAAG ACGT CTGCTGA TTTTGTTGTTTACTG insB 2912932 - 2912429 - | IS1 ORF2 SFV_2850 2913007 - 2913213 + | putative IS1 encoded protein intA 2914549 - 2913326 - | integrase TERM 3615 2913669 - 2913679 + g 72 -8.2 -3.81951 | ATAAATTCTCGGTTG CCGC TTA GCGG TTTCATCATCTCCAG TERM 3616 2914706 - 2914681 - R 100 -16.1 -5.31275 | opp_overlap 2914681 2914672 TCGGAGCACAAAAAA GCCCGCAGGGC TTGC GCCGTGCGGGC TCTTAGGACTTCATC TERM 3617 2914681 - 2914706 + r 93 -16.1 -3.06737 | opp_overlap 2914681, overlap 2914672 TCGGAGCACAAAAAA GCCCGCAGGGC TTGC GCCGTGCGGGC TCTTAGGACTTCATC TERM 3618 2915017 - 2915032 + r 72 -3.2 -5.08011 | overlap 2915019 GCTAAAGCGTAGTTT TCGTCG TTTG CGACTA TTTTTTGCGGCTTTT smpB 2915813 - 2915331 - | SsrA-binding protein TERM 3619 2915422 - 2915434 + g 70 -5.5 -4.35524 | TGCTGTTTTTTACCT TTGGC GAC GCCGA TTTTCACTTTGCACC TERM 3620 2916487 - 2916462 - g 74 -9.8 -3.45118 | gap 1, overlap 2916464 CTACCTGAGAAGCAA TACCTGCAGCG AGTGA CGCTGCAGG-A GGGCGCGACGGTTGA TERM 3621 2916486 - 2916464 - g 100 -14.9 -3.29593 | overlap 2916462 ACCTGAGAAGCAATA CCTGCAGCG AGTGA CGCTGCAGG AGGGCGCGACGGTTG TERM 3622 2916585 - 2916567 - g 74 -3 -4.96773 | overlap 2916569 TTAACTAAAAACAAA GTCGGC ATTTACA GCCGTC CGGCAAAACTAAGCG SFV_2853 2916327 - 2916701 + | hypothetical protein TERM 3623 2916743 - 2916704 - T 93 -12.4 -3.70444 | gap 1, opp_overlap 2916715, overlap 2916715 AGCGAATAAATAACA GACA-GAAAAAAGGTGCTC ATT GAGCACCTTTTTTAACGTC TTTGAGAGCAACTTT TERM 3624 2916715 - 2916731 + T 100 -12.3 -5.10077 | opp_overlap 2916704 2916715 AACAGACAGAAAAAA GGTGCTC ATT GAGCACC TTTTTTAACGTCTTT TERM 3625 2916731 - 2916715 - T 100 -12.3 -5.46276 | opp_overlap 2916715, overlap 2916704 AACAGACAGAAAAAA GGTGCTC ATT GAGCACC TTTTTTAACGTCTTT smpA 2917062 - 2916763 - | hypothetical protein recN 2918914 - 2917253 - | recombination and repair protein ppnK 2919878 - 2919000 - | inorganic polyphosphate/ATP-NAD kinase grpE 2920001 - 2920594 + | heat shock protein GrpE TERM 3626 2920646 - 2920613 - T 75 -9.5 -3.61398 | opp_overlap 2920617, overlap 2920614 2920617 CTGTTTTCGTAATAA TTCACGGCCCTGCAT GCGA ATGCAGGGCCGTTTT CGTTACTCCGCCACA TERM 3627 2920645 - 2920614 - T 82 -13 -2.76696 | opp_overlap 2920617, overlap 2920613 2920617 TGTTTTCGTAATAAT TCACGGCCCTGCAT GCGA ATGCAGGGCCGTTT TCGTTACTCCGCCAC TERM 3628 2920642 - 2920617 - T 100 -19.1 -2.6563 | opp_overlap 2920617, overlap 2920614 2920613 TTTCGTAATAATTCA CGGCCCTGCAT GCGA ATGCAGGGCCG TTTTCGTTACTCCGC TERM 3629 2920617 - 2920642 + T 100 -19.1 -4.45544 | opp_overlap 2920617 2920614 2920613 TTTCGTAATAATTCA CGGCCCTGCAT GCGA ATGCAGGGCCG TTTTCGTTACTCCGC yfjD 2921911 - 2920649 - | hypothetical protein SFV_2859 2922822 - 2921956 - | hypothetical protein TERM 3630 2922653 - 2922667 + g 85 -2.7 -5.40072 | overlap 2922652 GAAATAATAGCCATG CGCCG CCAGC CGCCG TTTTTTTGCAGCAGA ffh 2922914 - 2924275 + | signal recognition particle protein TERM 3631 2924356 - 2924388 + G 91 -9.2 -4.63218 | gap 1, opp_overlap 2924358, overlap 2924358 GGGCTTTTAATATGA CA-CCGGACTCCGTT CCTC GATGGGGTCCGGTTG TTTTATTCACACAAG TERM 3632 2924358 - 2924385 + G 95 -12 -4.43307 | opp_overlap 2924358, overlap 2924356 GCTTTTAATATGACA CCGGACTCCGTT CCTC GATGGGGTCCGG TTGTTTTATTCACAC rpsP 2924352 - 2924660 + | 30S ribosomal protein S16 rimM 2924679 - 2925227 + | 16S rRNA-processing protein trmD 2925258 - 2926025 + | tRNA (guanine-N(1)-)-methyltransferase rplS 2926067 - 2926414 + | 50S ribosomal protein L19 TERM 3633 2926445 - 2926466 + T 100 -11.5 -5.82281 | opp_overlap 2926402 2926400 2926445 ACATCCTGTTAAGAA GGGCTGGCC AATT GGCTGGCCC TTTTTTTGTCTGTTT yfiB 2926973 - 2926491 - | putative outer membrane lipoprotein yfiN 2927675 - 2926989 - | hypothetical protein TERM 3634 2927474 - 2927490 + g 77 -6.5 -4.64766 | overlap 2927476 GGTCATGTAGCGCGG TACGCAG AAG CTGCGCA TTTTTGGCCTGTAAA SFV_2867 2928211 - 2927855 - | hypothetical protein SFV_2868 2928722 - 2928204 - | hypothetical protein yfiL 2929237 - 2928872 - | hypothetical protein aroF 2929447 - 2930517 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3635 2931354 - 2931340 - g 71 -2.8 -4.77165 | CCTGGCAGAAGAAAA TGTTCA GCT TGAGCA ACTTCTGGCGCTCTC tyrA 2930528 - 2931649 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 3636 2931687 - 2931654 - T 72 -10.3 -2.83073 | opp_overlap 2931656 2931657, overlap 2931653 2931650 2931657 ATCGCCAGTAATAAT CCAGTGCCGGATGAT TCAC ATCATCCGGCACCTT TTCATCAGGTTGGAT TERM 3637 2931656 - 2931685 + T 100 -15.1 -4.28361 | opp_overlap 2931654 2931653 2931650 2931657, overlap 2931657 CGCCAGTAATAATCC AGTGCCGGATGAT TCAC ATCATCCGGCACC TTTTCATCAGGTTGG TERM 3638 2931684 - 2931657 - T 100 -18.6 -2.67428 | opp_overlap 2931656 2931657, overlap 2931654 2931653 2931650 GCCAGTAATAATCCA GTGCCGGATGAT TCAC ATCATCCGGCAC CTTTTCATCAGGTTG TERM 3639 2931657 - 2931684 + T 100 -18.6 -3.16534 | opp_overlap 2931657 2931654 2931653 2931650, overlap 2931656 GCCAGTAATAATCCA GTGCCGGATGAT TCAC ATCATCCGGCAC CTTTTCATCAGGTTG pheA 2932852 - 2931692 - | bifunctional chorismate mutase/prephenate dehydratase TERM 3640 2932902 - 2932882 - R 100 -11.8 -5.5112 | opp_overlap 2932882 GTTATCAATAAAAAA GGCCCCCC GATTT GGGAGGCC TTATTGTTCGTCTTC TERM 3641 2932882 - 2932902 + r 87 -10.3 -4.03167 | opp_overlap 2932882 GTTATCAATAAAAAA GGCCCCCCG ATT TGGGAGGCC TTATTGTTCGTCTTC TERM 3642 2933076 - 2933061 - R 100 -11.8 -5.4505 | GCTGTCAACAAAAAA CGCGCC CGAA GGCGCG TTGGCGATACACTCA yfiA 2933443 - 2933102 - | translation inhibitor protein RaiA TERM 3643 2933149 - 2933182 + g 72 -6.7 -4.1822 | gap 1, overlap 2933150 CGTCTTTCACCGATG TTGCGGCACGACGTGC TTC GC-CTTTGTGCTGCAG TTTATTGAGCTGCCG TERM 3644 2933698 - 2933674 - H 95 -2.7 -5.94214 | AACAGAATAAAAAAA CGGCAGCTCAA GGG CTGTAATGCCG ATCAGTTAAGGATCA TERM 3645 2933739 - 2933770 + H 100 -13.9 -4.4017 | opp_overlap 2933742 CCAGTGGCTGTGTAA GAATCCGGAAACG CTCACT TGTTTCCGGATTC TTTTATGCACATTGG TERM 3646 2933767 - 2933742 - H 72 -9.1 -3.61398 | opp_overlap 2933739 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTCTTTTATGCACAT SFV_2874 2933757 - 2935103 + | IS4 orf TERM 3647 2935114 - 2935085 - f 89 -9.3 -4.59109 | opp_overlap 2935086, overlap 2935087 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACTCCCCCGGTGAC TERM 3648 2935086 - 2935113 + F 81 -12.8 -3.14564 | opp_overlap 2935085 2935087 ACAGCCCCGAAAAAG AGCCAGTCAGTT GCTT AACTGACTGGCA TTACTCCCCCGGTGA TERM 3649 2935112 - 2935087 - f 100 -16.3 -3.90762 | opp_overlap 2935086, overlap 2935085 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTCCCCCGGTG TERM 3650 2935121 - 2935142 + F 93 -10.1 -4.72556 | overlap 2935139 GACTGGCATTACTCC CCCGGTGAC GTTT GTTGCCGGG TTTTCTCGTTTTTGG TERM 3651 2935139 - 2935150 + F 71 -3.6 -4.77157 | overlap 2935121 GGTGACGTTTGTTGC CGGG TTTT CTCG TTTTTGGTCACTTAC TERM 3652 2935396 - 2935421 + F 76 -8.5 -4.06527 | gap 1, overlap 2935402 AGAAGTCAGATGTCG TTTAATGGGCAA ATA TTGCCC-TTAAA TTCTCTTTTACTTTT TERM 3653 2935402 - 2935416 + F 73 -10 -3.32941 | overlap 2935396 CAGATGTCGTTTAAT GGGCAA ATA TTGCCC TTAAATTCTCTTTTA sdaC 2935667 - 2936956 + | serine transporter TERM 3654 2936965 - 2936984 + F 81 -12.8 -3.27786 | overlap 2936977 2936979 CAGCTAAGTCCTTTC GCGCCGCT TTCG GGCGGCGC TTCCTCCGTTTTAAC TERM 3655 2937791 - 2937771 - g 72 -5.3 -4.4767 | opp_overlap 2937771 TCAGCCAGGATAAAA CCACCACTG ACC CGATGGCGG TTGTTGACTGGATCA TERM 3656 2938357 - 2938321 - g 71 -9.4 -3.42659 | gap 1, opp_overlap 2938356, overlap 2938315 AGGTAAAGACATGAA CGCCAAG-TACCGCGAA ACCT CTCGCGGCGGCCTGGCG ATGAAGATCGTTGCC sdaB 2937014 - 2938381 + | L-serine dehydratase (deaminase), L-SD2 TERM 3657 2938391 - 2938413 + F 75 -9.8 -3.57825 | overlap 2938406 GATTAATCTCTCCCA GAGGCCTCGT TTT GCGAAGCCTC TTCCTGTTTTCTCAA TERM 3658 2938661 - 2938650 - g 75 -7.2 -4.30576 | overlap 2938652 TTTTGATGATGAAAA CCGC AGTA GCGG CTGGCGTCATCAGCG xni 2938402 - 2939247 + | exonuclease IX TERM 3659 2939253 - 2939282 + T 70 -9.3 -3.32844 | overlap 2939254 GGTACGGTAACGGCG AGCCGGATACG CCGCAAAT CGTATCCGGCA TTATCACATCAGCGC TERM 3660 2939254 - 2939281 + T 78 -12.8 -2.59564 | overlap 2939253 GTACGGTAACGGCGA GCCGGATACG CCGCAAAT CGTATCCGGC ATTATCACATCAGCG fucO 2940448 - 2939300 - | L-1,2-propanediol oxidoreductase TERM 3661 2939655 - 2939639 - G 70 -5.7 -4.38712 | TGGAGTGTTATAAAA CGCGCCC AGT GGATGCG CCATACCATGCACCA fucA 2941123 - 2940476 - | L-fuculose phosphate aldolase TERM 3662 2941859 - 2941876 + G 77 -6.3 -4.62957 | gap 1 ACAAATTTCCAGGCT GGCCTGAT CCA ATC-GGCC TTTTACTTTGGTTAT fucP 2941670 - 2942986 + | L-fucose transporter TERM 3663 2943040 - 2943029 - g 93 -2.2 -5.63103 | CTGTAATGAAAAAAA TCAG CTTA CCGA AAATTGGTATCCGCC TERM 3664 2943745 - 2943729 - g 71 -3 -4.82901 | gap 1, overlap 2943731 CTGGGCTGATAAAAA CTTCCGC TATG GCG-AAG ATGAAAATAACAAAC fucI 2943019 - 2944794 + | L-fucose isomerase TERM 3665 2944859 - 2944886 + F 82 -12.9 -3.01791 | overlap 2944861 ACAAGCAAGAGTGGT TAGCCGGATAA ACAATG TTATCCGGCTA TATTGCAGGAGCGAT TERM 3666 2944861 - 2944884 + F 75 -11.1 -3.06696 | overlap 2944859 AAGCAAGAGTGGTTA GCCGGATAA ACAATG TTATCCGGC TATATTGCAGGAGCG fucU 2946324 - 2946746 + | protein of fucose operon TERM 3667 2946742 - 2946732 - f 76 -2.4 -5.40474 | ATTCTTTTAAAAAAA GGGG TAA CACC GTAATCTCATACCGG TERM 3668 2946759 - 2946779 + F 73 -9.6 -3.34043 | overlap 2946760 TAATCTCATACCGGT ACGCCCGC ATGAC GCGGGCGG TTATCGAATGATGGG TERM 3669 2946760 - 2946778 + F 81 -13.1 -2.60212 | overlap 2946759 AATCTCATACCGGTA CGCCCGC ATGAC GCGGGCG GTTATCGAATGATGG TERM 3670 2947052 - 2947070 + G 72 -11.6 -2.52464 | opp_overlap 2947051 GCATAAAGCAGATAT CGCGCGCG AGG CGCTCGCG TGGATTGAAGAAGGG fucR 2946804 - 2947535 + | DNA-binding transcriptional activator FucR ygdE 2948679 - 2947579 - | putative RNA 2'-O-ribose methyltransferase ygdD 2949067 - 2948672 - | hypothetical protein TERM 3671 2949040 - 2949026 - G 74 -8.5 -3.88001 | TGCCACAAAAATGAA GCCGC TAATG GCGGC GAAAATCAGCATAAA gcvA 2950003 - 2949086 - | DNA-binding transcriptional activator GcvA TERM 3672 2950245 - 2950259 + r 100 -10 -5.17576 | opp_overlap 2950244 TGCGATTCAGACCAT GGTAGC AAA GCTACC TTTTTTCACTTCCTG TERM 3673 2950310 - 2950329 + r 100 -10.7 -5.86332 | opp_overlap 2950310 ATAGTGATTAATGTA GCACCGC CTAATT GCGGTGC TTTTTTTTACCTTGC TERM 3674 2950329 - 2950310 - R 70 -10.7 -2.57423 | opp_overlap 2950310 ATAGTGATTAATGTA GCACCGC CTAATT GCGGTGC TTTTTTTTACCTTGC SFV_2888 2950581 - 2950354 - | hypothetical protein SFV_2889 2950773 - 2951978 + | cysteine sulfinate desulfinase ygdK 2951978 - 2952421 + | hypothetical protein TERM 3675 2952430 - 2952467 + T 100 -14.9 -3.92542 | opp_overlap 2952430 2952431, overlap 2952431 2952433 GGTTTAAGCACAGAA CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA TTGTTTAACCCTGAC TERM 3676 2952467 - 2952430 - T 100 -17.1 -3.59946 | opp_overlap 2952430 2952431 2952433, overlap 2952431 GGTTTAAGCACAGAA CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA TTGTTTAACCCTGAC TERM 3677 2952431 - 2952466 + T 100 -18.4 -2.95204 | opp_overlap 2952430 2952431, overlap 2952430 2952433 GTTTAAGCACAGAAC CGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTG ATTGTTTAACCCTGA TERM 3678 2952466 - 2952431 - T 100 -18.4 -2.75647 | opp_overlap 2952431 2952430 2952433, overlap 2952430 GTTTAAGCACAGAAC CGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTG ATTGTTTAACCCTGA TERM 3679 2952433 - 2952464 + T 100 -17.4 -3.02639 | opp_overlap 2952431 2952430, overlap 2952431 2952430 TTAAGCACAGAACCG GGTCGGATAAGACG TTCG CGTCTCATCCGACC TGATTGTTTAACCCT ygdL 2953278 - 2952472 - | putative enzyme TERM 3680 2953318 - 2953298 - R 100 -10.4 -4.93365 | CCTCAGAATTAAAAA GGGCGAGG TTATC CCTCACCC TAAACGCATAAATGC TERM 3681 2953482 - 2953456 - R 72 -10.8 -2.8082 | opp_overlap 2953456 2953458, overlap 2953455 2953458 CACTTAGTCAATAAT CAGGATGTGAGG TTA CCCCTCACCCTG TCATATCCGTAAAAA mltA 2954614 - 2953517 - | murein transglycosylase A TERM 3682 2955019 - 2955032 + r 100 -8.1 -6.02919 | opp_overlap 2955019 CAACCAATTATTGAA CACCC TAAC GGGTG TTTTTTTGTTTCTGA TERM 3683 2955076 - 2955063 - R 88 -5.9 -5.60993 | opp_overlap 2955063 TCTCCCATAAAAAAA GCGCC ATTC AGCGC CTTTTTATCATCCCC SFV_2895 2956337 - 2955084 - | putative amidase TERM 3684 2955396 - 2955406 + g 78 -8.2 -4.25104 | opp_overlap 2955396 GGTGTGGTCGACATA GCGG TCA CCGC TTTTGCTCACGCCAC TERM 3685 2957345 - 2957362 + G 79 -12.7 -2.98381 | opp_overlap 2957337, overlap 2957343 2957347 AGTGAAAGCCTGCCG CAGCGGC GTGC GCCGCTG TCATTTAATCAGTTA TERM 3686 2957861 - 2957846 - g 73 -4 -4.8048 | GCCCGAGAGCAAAAA GCAGTT GTAC AACTAC CAGCGTAAATCCAAA argA 2956569 - 2957900 + | N-acetylglutamate synthase TERM 3687 2957955 - 2957911 - T 74 -7.2 -4.30978 | gap 2, opp_overlap 2957911, overlap 2957914 GGTAAGCGATGAAAA TCACCGGATGCG--GCAGGCGT AAC ACTCGTGCGTCGCATCCGGCAA TTACGTTTATTCCCG RecD 2959788 - 2957962 - | exonuclease V subunit alpha TERM 3688 2958700 - 2958716 + g 79 -4.3 -5.00616 | opp_overlap 2958698 ACCAATGCCAGAATC GCTGCCG AAA CGATAGC TTTTTTGCAGCAGGC TERM 3689 2959492 - 2959470 - G 70 -4.8 -4.46112 | TGCGATTCAAATAAA GACGATCGCC ACA GAGGATCATC GGCGTGGGTTCATCT RecB 2963330 - 2959788 - | exonuclease V subunit beta TERM 3690 2960949 - 2960974 + g 74 -8.3 -3.85817 | gap 1, overlap 2960950 CAGATCTTCCGCCAG ACGTTCGACCTC CGC GAGGTCG-ACGC TTTCTGGCGCAGCAT TERM 3691 2960950 - 2960973 + g 75 -11.8 -2.91276 | gap 1, overlap 2960949 AGATCTTCCGCCAGA CGTTCGACCTC CGC GAGGTCG-ACG CTTTCTGGCGCAGCA TERM 3692 2962289 - 2962301 + g 74 -6.2 -4.57569 | overlap 2962288 2962296 CATCAAAACCCAATT CGCC ACGGC GGCG TTTTTCACGCGCTAC TERM 3693 2962477 - 2962456 - G 70 -5.8 -4.16016 | CGATCTTCTAAGAAA CGCTGGGA GAATTT TTCCAGCG ACTCCGGCAACTGAT TERM 3694 2963198 - 2963184 - G 71 -9.2 -3.53224 | CAGCGGGCGGGGAAA GGCGGC GGA ACCGCC TAGTCCAAGTAACAG TERM 3695 2963299 - 2963273 - G 90 -14.4 -2.72049 | CAGAGGCTTCAATCA GGCGCTCGCCCT GTA AGGGCAAGCGCA AAGGATCTAGTGTCT ptr 2966211 - 2963323 - | protease III TERM 3696 2963947 - 2963964 + g 72 -5.5 -4.58395 | CGCTGCCAGTGCGGA GTCGGTG CTGT TACCGGC TTTTTCAAAGATGAC TERM 3697 2965397 - 2965425 + g 84 -3.7 -5.28755 | overlap 2965392 2965398 2965405 ATGCCCTTTTGCGCG TCGGTGACTACCG GCA CGGTGATTTCCGG TTTTTTGCTCTCTTT TERM 3698 2965843 - 2965829 - G 70 -7.1 -4.128 | ACTTCCAGATAGAAA GCCGT GCGAT ACGGC GCAGTGCTGGCATTG recC 2969755 - 2966387 - | exonuclease V subunit gamma TERM 3699 2966776 - 2966764 - G 95 -9.1 -4.82901 | CTTTGCGTAGAAAAA GGCGA CTT TCGCC ATTACCACCGCTGGC TERM 3700 2968800 - 2968782 - G 70 -4.4 -4.45083 | opp_overlap 2968785 GTCACATCGACAAAA GCGTCCAG CTC CTGGCTGC TCTCCAGGTCAGAAA ppdC 2970091 - 2969768 - | hypothetical protein ygdB 2970483 - 2970076 - | hypothetical protein TERM 3701 2970275 - 2970305 + g 85 -8.2 -4.56597 | opp_overlap 2970279 GCGTACTGCGAGCAC TGAACTGCTGGCTG CGT CTGCCAGGAGTGCA TTTTTCCCCACGCCA ppdB 2971043 - 2970480 - | hypothetical protein TERM 3702 2971666 - 2971647 - R 100 -10.7 -5.44119 | CGGAGGGTAAAAAAA CCGACGC ACACTG GCGTCGG CTCTGGCAGGATGTT thyA 2972482 - 2971688 - | thymidylate synthase TERM 3703 2972355 - 2972325 - G 72 -11.1 -3.09516 | opp_overlap 2972341 TCGTGGATGATGGAA CGCAGGTGGCAAC GTTTG GTTGTCACCAGCG GGAATCCATCCTGCA lgt 2973304 - 2972489 - | prolipoprotein diacylglyceryl transferase ptsP 2975761 - 2973515 - | fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein TERM 3704 2975067 - 2975107 + g 81 -10.6 -3.61398 | gap 2, opp_overlap 2975043 2975075 TCTTTTTGTGCTCCG GCGGCAAA-GCGTTT-GCTG TAG CGGCGAAACTCGTTTGCCGC TTCTTCCAGCGCCCC ygdP 2976304 - 2975774 - | dinucleoside polyphosphate hydrolase TERM 3705 2977242 - 2977227 - g 76 -7.6 -4.27316 | opp_overlap 2977225 2977227 GCGTGGAACTTAAAA CTATCC CTGT GGATAG TCTTGGTCGTCCGCT TERM 3706 2977606 - 2977618 + G 85 -6.9 -4.86731 | CGAACGGATTCTGAC GCTGC CAC GCGGC TTTTATTTGAAGAAG mutH 2976989 - 2977678 + | DNA mismatch repair protein SFV_2910 2977747 - 2978460 + | putative transport protein SFV_2911 2978598 - 2978816 + | hypothetical protein TERM 3707 2978845 - 2978821 - f 79 -8.6 -4.20918 | opp_overlap 2978820 2978819, overlap 2978824 TTGAACGTTAACAAA TAAGGTCAGC ATCCG GCTGGCCTTA AGATTTTTCTCTTTC TERM 3708 2979750 - 2979740 - g 93 -8.2 -4.82855 | opp_overlap 2979739 2979737, overlap 2979742 GAGCAAACGCAAAAA GCCG TCG CGGC GTATGTTGATATCGC SFV_2912 2978924 - 2979964 + | putative aldo-keto reductase TERM 3709 2979995 - 2979966 - T 77 -9.3 -3.96327 | opp_overlap 2979967 2979972, overlap 2979968 2979984 ATCCTGCACCATAAA GATTAACGCCGGT TAAA ACCGGCGTTAAAT ATTAATGACGGCGCT TERM 3710 2979967 - 2979994 + T 81 -12.8 -3.13403 | opp_overlap 2979966 2979968 2979984, overlap 2979972 TCCTGCACCATAAAG ATTAACGCCGGT TAAA ACCGGCGTTAAA TATTAATGACGGCGC TERM 3711 2979993 - 2979968 - T 100 -16.3 -3.57406 | opp_overlap 2979967 2979972, overlap 2979966 2979984 CCTGCACCATAAAGA TTAACGCCGGT TAAA ACCGGCGTTAA ATATTAATGACGGCG TERM 3712 2979972 - 2979989 + T 81 -12.7 -3.20348 | opp_overlap 2979968 2979966 2979984, overlap 2979967 CACCATAAAGATTAA CGCCGGT TAAA ACCGGCG TTAAATATTAATGAC TERM 3713 2980031 - 2980001 - T 70 -9 -3.45571 | opp_overlap 2980004, overlap 2979984 2979995 2980004 GGCGTTAAATATTAA TGACGGCGCTGC CAGATCC ACAGCGCCGTTA TTGCCAGCGCAAATA TERM 3714 2980028 - 2980004 - T 72 -10.7 -2.8742 | opp_overlap 2980004, overlap 2979984 2980001 2979995 GTTAAATATTAATGA CGGCGCTGC CAGATCC ACAGCGCCG TTATTGCCAGCGCAA TERM 3715 2980004 - 2980028 + T 75 -10 -3.61398 | opp_overlap 2979984 2980004 2980001 2979995 GTTAAATATTAATGA CGGCGCTG CCAGATCCA CAGCGCCG TTATTGCCAGCGCAA ygeD 2981142 - 2979997 - | hypothetical protein aas 2983339 - 2981180 - | bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase TERM 3716 2983435 - 2983452 + H 81 -12.7 -3.14132 | opp_overlap 2983435 AGGTGCGAAAAAAAA CCTGCGC ATCC GCGCAGG TTGGTGCAAGAGACA TERM 3717 2983452 - 2983435 - H 100 -12.7 -5.75945 | opp_overlap 2983435 AGGTGCGAAAAAAAA CCTGCGC ATCC GCGCAGG TTGGTGCAAGAGACA TERM 3718 2983655 - 2983638 - H 100 -12.7 -6.07627 | opp_overlap 2983637 2983634 2983644 ACCGGCAAAAAAAAA CCTGCGC ATCT GCGCAGG CTGGTGTAATTCATG galR 2983925 - 2984956 + | DNA-binding transcriptional regulator GalR lysA 2986225 - 2984963 - | diaminopimelate decarboxylase lysR 2986347 - 2987282 + | DNA-binding transcriptional regulator LysR ygeA 2988282 - 2987269 - | putative resistance proteins TERM 3719 2988083 - 2988057 - G 100 -18.8 -5.30155 | CTATTAACGAAAAAA GGGCCGGATGTA CAG CACATCCGGCCC GTGAAATCAGATGCC araE 2989635 - 2988292 - | low-affinity L-arabinose transport system proton symport protein TERM 3720 2989563 - 2989545 - G 81 -4.6 -5.04385 | overlap 2989547 2989548 GACATTGTGAAAAAA TACGTGAA CAA TTCACACA GGTGTCAGGTCGGAA TERM 3721 2989798 - 2989781 - R 100 -12.7 -5.4492 | TAGAGATATAAAAAA CCCTGCC ATGC GGCAGGG TCATAAAAGTAAGAG kduD 2990582 - 2989821 - | 2-deoxy-D-gluconate 3-dehydrogenase TERM 3722 2990425 - 2990410 - G 93 -8.2 -5.03314 | GTCAGGCTTAAAAAA CGACGC CCCA GCGCCG TGACCTGCTCGATGG kduI 2991448 - 2990612 - | 5-keto-4-deoxyuronate isomerase TERM 3723 2991494 - 2991508 + r 72 -5 -4.60797 | overlap 2991491 2991495 AATAGAAAACGATAG TGAAAC ACT GTTTCG TTTTCTCTATAAAGG TERM 3724 2991554 - 2991582 + r 86 -12.1 -3.60792 | opp_overlap 2991561, overlap 2991561 GGCTAGGGTTTTCAA TTAAAAATAAAAC AAT GTTTTATTTTTAA TTTAAGGATTAAAAA TERM 3725 2991575 - 2991561 - R 78 -5.8 -4.8622 | opp_overlap 2991554 2991561 GTTTTCAATTAAAAA TAAAAC AAT GTTTTA TTTTTAATTTAAGGA TERM 3726 2991561 - 2991575 + r 80 -5.8 -4.98531 | opp_overlap 2991561, overlap 2991554 GTTTTCAATTAAAAA TAAAAC AAT GTTTTA TTTTTAATTTAAGGA yqeF 2992916 - 2991735 - | acetyl-CoA acetyltransferase TERM 3727 2993003 - 2992990 - H 84 -5.3 -5.41746 | AATTGTTTAAAAAAA GTGAT TTTT ATCAC AAAAGAAATATGCCT TERM 3728 2994405 - 2994442 + H 100 -16.7 -4.8083 | gap 1, overlap 2994398 2994406 AGCTAATATCCGTTG TGG-ATGGTTCAAAATTG CTA CAATTTTGAACCATTCCA TTTTTCATAATATTC TERM 3729 2994406 - 2994440 + H 100 -18.2 -2.67364 | overlap 2994398 2994405 GCTAATATCCGTTGT GGATGGTTCAAAATTG CTA CAATTTTGAACCATTC CATTTTTCATAATAT SFV_2924 2995030 - 2995329 + | IS3 ORF1 TERM 3730 2995603 - 2995576 - g 75 -4.7 -4.74103 | overlap 2995577 2995578 CCTTTAACGTAAAAA CCGTGGCGGCA AGCCTG CGCCGTCAGGG ACTGAGGGCAAAGGC SFV_2925 2995326 - 2996192 + | IS3 ORF2 SFV_2926 2996799 - 2996206 - | hypothetical protein SFV_2928 2997898 - 2997143 - | putative lipoprotein TERM 3731 2997250 - 2997264 + g 76 -4.2 -5.00884 | opp_overlap 2997226 2997222, overlap 2997239 ATGCCGCATCCGTGC TCCCCA TGG TGGCGA TTTTTTGCCCAGCCT SFV_2929 2998189 - 2997932 - | putative IS1 encoded protein insB 2998264 - 2998767 + | IS1 ORF2 TERM 3732 2999388 - 2999368 - g 78 -8.3 -4.25658 | overlap 2999365 ACTTGACGAAAACAA GCGCGAT ACCGCCG ATCGCGC ACTGCTAACTCGCCA TERM 3733 3000691 - 3000724 + G 77 -10.3 -3.61398 | gap 1, overlap 3000693 3000694 CTCACGCCAGAGCTA TGTTGCCGCGCCTGCG CTG CGCAG-TGCGGCACTA TTATTAAAAGAGAAA TERM 3734 3000693 - 3000722 + G 76 -10.7 -3.38812 | gap 1, overlap 3000691 3000694 CACGCCAGAGCTATG TTGCCGCGCCTGCG CTG CGCAG-TGCGGCAC TATTATTAAAAGAGA TERM 3735 3000694 - 3000721 + G 84 -14.2 -2.63073 | gap 1, overlap 3000693 3000691 ACGCCAGAGCTATGT TGCCGCGCCTGCG CTG CGCAG-TGCGGCA CTATTATTAAAAGAG TERM 3736 3000782 - 3000741 - g 80 -5.2 -4.91977 | gap 1 TATTAAAAGAGAAAA TCATCGCTCAC-GCCGCAG TCATG CTACATCAGTCAGCGATGA ATTTGACCCTGATAA SFV_2931 2999090 - 3001387 + | xanthine dehydrogenase subunit XdhA TERM 3737 3001473 - 3001451 - g 70 -9.8 -3.16564 | TGCCGATGCCATCAA CCTGCTGGCT GAC AACCCGCAGG CCAAACTGCTCGCCG ygeT 3001398 - 3002276 + | xanthine dehydrogenase subunit XdhB SFV_2933 3002273 - 3002752 + | xanthine dehydrogenase subunit XdhC TERM 3738 3002786 - 3002755 - T 93 -10.8 -4.5528 | opp_overlap 3002760, overlap 3002756 3002760 GAAAACGAAGTAAAA GGATATCCGGCCTG AATT CAGGCCGGATTCAC TGAGGTTATGTGTTT TERM 3739 3002784 - 3002756 - T 90 -14 -3.31541 | gap 1, opp_overlap 3002760, overlap 3002755 3002760 AAAACGAAGTAAAAG GATATCCGGCCTG AATT CAGGCCGGAT-TC ACTGAGGTTATGTGT TERM 3740 3002760 - 3002781 + T 93 -15.9 -3.08471 | opp_overlap 3002756 3002755 3002760 CGAAGTAAAAGGATA TCCGGCCTG AATT CAGGCCGGA TTCACTGAGGTTATG TERM 3741 3002781 - 3002760 - T 100 -15.9 -3.14708 | opp_overlap 3002760, overlap 3002756 3002755 CGAAGTAAAAGGATA TCCGGCCTG AATT CAGGCCGGA TTCACTGAGGTTATG SFV_2934 3002984 - 3002772 - | putative IS1 encoded protein insB 3003059 - 3003562 + | IS1 ORF2 ygfU 3003887 - 3005335 + | putative permease SFV_2937 3005585 - 3006133 + | isopentenyl-diphosphate delta-isomerase TERM 3742 3006155 - 3006138 - T 100 -10.5 -5.64421 | opp_overlap 3006138 AGCTTAAATAAAAAA CCCCGAC ATTT GCCGGGG TTGTGAGCATAACGT lysS 3007693 - 3006176 - | lysyl-tRNA synthetase TERM 3743 3008870 - 3008844 - R 82 -11.7 -3.30903 | gap 1, opp_overlap 3008844 AAAATGCGGTGATAA GAGCG-GGATTG TACC CAATCCACGCTC TTTTTTATAGAGAAG TERM 3744 3008844 - 3008870 + r 100 -11.7 -5.24129 | gap 1, opp_overlap 3008844 AAAATGCGGTGATAA GAGCG-GGATTG TACC CAATCCACGCTC TTTTTTATAGAGAAG recJ 3010484 - 3008892 - | ssDNA exonuclease RecJ TERM 3745 3010026 - 3010014 - G 70 -4.7 -4.58395 | CTGATCGCGCAAAAA GGTGC GCA GCGCC AGCATCAGATAAAAC dsbC 3011341 - 3010631 - | thiol:disulfide interchange protein DsbC TERM 3746 3010834 - 3010844 + g 84 -4 -5.19879 | CTGCCATCACATCAT CAAA CGC TTTG TTTTTATCTTTCGCA xerD 3012262 - 3011366 - | site-specific tyrosine recombinase XerD fldB 3012374 - 3012895 + | flavodoxin FldB TERM 3747 3012902 - 3012931 + T 72 -8.5 -3.77188 | TACGCCTGATCTCAC TGACGGCTTAGCG CATA TGCTTTGCCGTCA TCTTTATCTTTGCGT SFV_2944 3013342 - 3012935 - | hypothetical protein ygfY 3013589 - 3013323 - | hypothetical protein ygfZ 3013832 - 3014812 + | putative global regulator SFV_2947 3015667 - 3015008 - | putative oxidoreductase TERM 3748 3015072 - 3015089 + g 71 -9.1 -3.50572 | opp_overlap 3015057 3015071 3015072 CCGCCGAGCACGAAG CCGTGCC AGAT GGCATGG TTGTATGGAATGCGT SFV_2948 3016031 - 3015831 - | hypothetical protein TERM 3749 3016740 - 3016728 - g 70 -5.5 -4.38369 | opp_overlap 3016738 CAACGAAATAAACAA CCAGC GTA ACTGG CGTGCGCCGCTGTTT bglA 3016180 - 3017520 + | 6-phospho-beta-glucosidase A TERM 3750 3017658 - 3017628 - T 74 -10.6 -3.18681 | gap 1, opp_overlap 3017622, overlap 3017631 CTTTAAGTCGATGAA GTACCGGATGCAA TACTTG TTGCATCCGGT-C AGACAACTTCCCTGT TERM 3751 3017656 - 3017631 - T 82 -13.4 -2.79023 | opp_overlap 3017622, overlap 3017628 TAAGTCGATGAAGTA CCGGATGCAA TACTTG TTGCATCCGG TCAGACAACTTCCCT TERM 3752 3018646 - 3018659 + T 75 -9.5 -3.56092 | opp_overlap 3018646 TCATCTGACTAAAAA GGCGC CGAA GCGCC TTTAGAAAATACTCG TERM 3753 3018659 - 3018646 - T 100 -9.5 -4.7373 | opp_overlap 3018646 TCATCTGACTAAAAA GGCGC CGAA GCGCC TTTAGAAAATACTCG gcvP 3021558 - 3018685 - | glycine dehydrogenase gcvH 3022066 - 3021677 - | glycine cleavage system protein H gcvT 3023184 - 3022090 - | glycine cleavage system aminomethyltransferase T TERM 3754 3023588 - 3023565 - R 93 -10.3 -4.39386 | overlap 3023559 TTCAAATGAGGAAAA TCTCCCGGC GAAAAA ACCGGGAGA TGAAAGTGTGATGGG visC 3024834 - 3023632 - | hypothetical protein TERM 3755 3024234 - 3024246 + g 73 -9.1 -3.67775 | opp_overlap 3024222 AAACCTGCCGCGCCA CCGCA TCA TGCGG TTCTTCCGTGCGAAT ubiH 3026035 - 3024857 - | 2-octaprenyl-6-methoxyphenyl hydroxylase pepP 3027357 - 3026032 - | proline aminopeptidase P II TERM 3756 3027290 - 3027276 - G 75 -5.6 -4.72272 | opp_overlap 3027276 3027280, overlap 3027277 3027279 3027280 CTGGTGCAGCAAAAA TCAGCG CGG CGCTGC CGGGTTGCATTTGCT TERM 3757 3027289 - 3027277 - G 71 -9.1 -3.43042 | opp_overlap 3027276 3027280, overlap 3027276 3027279 3027280 TGGTGCAGCAAAAAT CAGCG CGG CGCTG CCGGGTTGCATTTGC ygfB 3027967 - 3027383 - | hypothetical protein ygfE 3028129 - 3028458 + | Z-ring-associated protein TERM 3758 3029129 - 3029152 + G 74 -3 -4.91109 | overlap 3029130 3029133 CTTTGATGAGTACGG TCAGCGCCTG GGAA TGGGCGGTGG TTTTTATGATCGGAC ygfA 3028560 - 3029306 + | putative ligase TERM 3759 3029483 - 3029502 + T 86 -11.4 -3.66178 | ACCCTTCTCCTTCAA GCCCTCGC TTCG GTGAGGGC TTTACCGTTACAGCC TERM 3760 3029728 - 3029688 - T 78 -6.2 -4.7254 | gap 2, opp_overlap 3029681 3029689 3029698, overlap 3029689 3029690 AGTGGCTATCAAAAA GTTCGGTTCAGGGCGATGCA CCC CGCATCGCCCTGATT-G-AC ATCGTTGATTCTTTG TERM 3761 3029698 - 3029720 + T 86 -14.9 -2.74488 | opp_overlap 3029690 3029688 3029689, overlap 3029689 3029681 AAAAAGTTCGGTTCA GGGCGATGC ACCCC GCATCGCCC TGATTGACATCGTTG TERM 3762 3029875 - 3029894 + T 86 -11.4 -3.66178 | overlap 3029888 ACCCTTCTCCTTTAA GCCCTCGC TTCG GTGAGGGC TTTACCGTTACAGCC TERM 3763 3030039 - 3030069 + T 76 -8.2 -4.07568 | opp_overlap 3030043, overlap 3030043 TGGAGAAGGGATAAA AAAACGGGCAAGTC AGT GACCTGCCCGTTAA TTTTCAGAGAAGGGG TERM 3764 3030043 - 3030065 + T 95 -13.4 -3.66908 | opp_overlap 3030043, overlap 3030039 GAAGGGATAAAAAAA CGGGCAAGTC AGT GACCTGCCCG TTAATTTTCAGAGAA TERM 3765 3030065 - 3030043 - T 100 -15.6 -5.66684 | opp_overlap 3030039 3030043 GAAGGGATAAAAAAA CGGGCAAGTC AGT GACCTGCCCG TTAATTTTCAGAGAA serA 3031319 - 3030087 - | D-3-phosphoglycerate dehydrogenase TERM 3766 3030751 - 3030764 + g 72 -4.5 -4.70515 | overlap 3030750 3030752 TGTACCTGAGTGGCG TTGCC CAGC GGCAG TTTGTTTTCAATATC TERM 3767 3031404 - 3031386 - R 79 -3.2 -5.27399 | overlap 3031389 CAACATATCAAAAAA TAATATTG CGG CAATATGA ACGTTTGCGTCGCGA TERM 3768 3031401 - 3031389 - R 72 -4.9 -4.69962 | overlap 3031386 CATATCAAAAAATAA TATTG CGG CAATA TGAACGTTTGCGTCG TERM 3769 3031548 - 3031574 + r 77 -11.6 -2.91873 | opp_overlap 3031541 3031539, overlap 3031545 AATGAAGAGAATTTT TTTAACGGGGGA GGT TCCCCCGTCAGA TCATTTCACAATGGT rpiA 3032234 - 3031575 - | ribose-5-phosphate isomerase A TERM 3770 3031661 - 3031683 + g 72 -7 -4.20531 | AGCCAACAGTCACCA CGCCAGGAAT CGC ATTTATGGCG TTTTCCATCGCTATC TERM 3771 3032835 - 3032812 - g 72 -4.4 -4.70626 | overlap 3032814 GAACAAGGGCAAAAA CTGCTGGCAC TGCT GCGCCAGGTG GAGTTGCTGGAAGAA iciA 3032617 - 3033510 + | chromosome replication initiation inhibitor protein TERM 3772 3033544 - 3033524 - f 70 -9.8 -3.0082 | opp_overlap 3033523 3033524, overlap 3033523 AATCCATCAAATAAT GCCTGATA GCACA TATCAGGC GTTGTCCTCACTTCT TERM 3773 3034187 - 3034208 + G 74 -5.9 -4.57353 | gap 1, overlap 3034186 GATGACCATGAATGG CG-CAGTGCT ACC AGTACTGGCG TTTTATATCGTCGCC TERM 3774 3034584 - 3034594 + G 70 -6.8 -4.06419 | AACGTCGCCATGTTG CGTG CGG CACG TTATTTATGGAGCGA sbm 3033714 - 3035858 + | methylmalonyl-CoA mutase TERM 3775 3036189 - 3036201 + G 72 -6.9 -4.1552 | opp_overlap 3036180, overlap 3036190 GAATGACCTGGCGCG TGCCG AGG CGGCG TTTATTCGCCCGGTA ygfD 3035851 - 3036846 + | arginine/ornithine transport system ATPase ygfG 3036857 - 3037642 + | methylmalonyl-CoA decarboxylase ygfH 3037666 - 3039144 + | putative coenzyme A transferase TERM 3776 3039145 - 3039203 + T 83 -9.89999 -4.06904 | gap 2, overlap 3039145 TCGATGCTGGGTTAA TGGT--TTGTCCCGTCACGATCTTCAGCA ATA TGCTGAAGATCGTGGCGGTATAACGATGA TTTCTGATTGAATAA TERM 3777 3039145 - 3039200 + T 100 -18.6 -3.0682 | gap 1, overlap 3039145 TCGATGCTGGGTTAA TGGTTTGTCCCGTCACGATCTTCAGCA ATA TGCTGAAGATCGTGGCGGTATAA-CGA TGATTTCTGATTGAA SFV_2967 3040036 - 3039614 - | putative LYSR-type transcriptional regulator TERM 3778 3039929 - 3039954 + g 84 -3.9 -5.24129 | opp_overlap 3039935, overlap 3039930 CGCGGCAATGCTTTT ACCAAATGGCG AAGC CGTCATATGGA TTTTTTCTGCCGCCC TERM 3779 3040170 - 3040200 + r 79 -10.5 -3.50808 | gap 1, opp_overlap 3040159 3040169 3040168 3040172, overlap 3040168 AATATCGGGTAAAGG CAT-TAGCCCGACG AATA CGTCGGGCTACAAG TATTATTGTGCTGCA TERM 3780 3040197 - 3040172 - R 81 -13.3 -2.64472 | opp_overlap 3040170 3040168, overlap 3040159 3040169 3040168 TATCGGGTAAAGGCA TTAGCCCGACG AATA CGTCGGGCTAC AAGTATTATTGTGCT yggE 3040910 - 3040203 - | hypothetical protein yggA 3041629 - 3041036 - | arginine exporter protein TERM 3781 3041801 - 3041776 - R 82 -11.9 -3.31932 | opp_overlap 3041774, overlap 3041774 ATAACTAATAAGAGA GAGGCCAGAGA GTAT TATCTGGCCTC AGCGTTGATTACGCA yggB 3042670 - 3041810 - | mechanosensitive channel MscS TERM 3782 3042836 - 3042820 - R 100 -11.5 -5.40072 | TTTTGGCGAAAAAAA GACCCGC AGA GCGGGCC TTGAGATAAGCAGAA fba 3044024 - 3042861 - | fructose-bisphosphate aldolase TERM 3783 3044120 - 3044100 - R 75 -3.1 -5.20216 | overlap 3044101 TAGAGTATGAAAAAA TGCGTGCTC TAA AAGCGCGCT GAAACAAGGGCAGGT TERM 3784 3044124 - 3044150 + r 90 -7.3 -5.37865 | gap 1, opp_overlap 3044128, overlap 3044125 3044128 TAAAAGCGCGCTGAA ACA-AGGGCAGG TTTC CCTGCCCTGTGA TTTTTTACTTCTTAG TERM 3785 3044125 - 3044149 + r 83 -10.8 -3.81092 | gap 1, opp_overlap 3044128, overlap 3044124 3044128 AAAAGCGCGCTGAAA CA-AGGGCAGG TTTC CCTGCCCTGTG ATTTTTTACTTCTTA TERM 3786 3044128 - 3044145 + r 81 -12.7 -3.27687 | opp_overlap 3044128, overlap 3044125 3044124 AGCGCGCTGAAACAA GGGCAGG TTTC CCTGCCC TGTGATTTTTTACTT TERM 3787 3044145 - 3044128 - R 95 -12.7 -3.90922 | opp_overlap 3044125 3044124 3044128 AGCGCGCTGAAACAA GGGCAGG TTTC CCTGCCC TGTGATTTTTTACTT pgk 3045318 - 3044155 - | phosphoglycerate kinase epd 3046387 - 3045368 - | erythrose 4-phosphate dehydrogenase TERM 3788 3046812 - 3046831 + G 74 -2.8 -5.02074 | gap 1, overlap 3046814 CTTTTACGCACTGCG CCTCCT-CC CCG GGCAGGAAG TTTTTTCCCAGCTAC SFV_2974 3046759 - 3047190 + | hypothetical protein SFV_2975 3047213 - 3047791 + | putative inner membrane protein SFV_2976 3047792 - 3048100 + | lipoprotein SFV_2977 3048101 - 3048499 + | lipoprotein SFV_2978 3048487 - 3049164 + | putative ATP-binding protein of ABC transport system TERM 3789 3049386 - 3049373 - g 78 -5.2 -4.7657 | opp_overlap 3049384, overlap 3049375 GAAAAACCTGAAAAA CCGC CAGCGC GCGG CAAAGGTTGGCGTAC TERM 3790 3049739 - 3049762 + G 81 -9.6 -4.11805 | opp_overlap 3049735 GGTAGCAATCAGTCA TGACGCCG CATTTACC CGGCGTCA TTTCTCTCGTGTGGT SFV_2979 3049302 - 3049835 + | putative ATP-binding protein of ABC transport system frcK 3050520 - 3049807 - | putative fructose transport system kinase yggD 3051026 - 3050517 - | putative DNA-binding transcriptional regulator yggF 3052013 - 3051048 - | fructose-1,6-bisphosphatase II-like protein TERM 3791 3051884 - 3051922 + g 82 -2.5 -5.35224 | overlap 3051892 3051903 GAAAAGCGACGTCGT TTAATG-CCTGGCGCATCG CGG TGAC-CGCCAGGCCATCAA TTTTATTTTTGTCGC TERM 3792 3051955 - 3051974 + g 87 -13.6 -3.05384 | overlap 3051957 CATCCGGTTTGCGGC CAGGCAGC CAAC GCTGCCTG TTCCGTAACGCGAAA SFV_2983 3053251 - 3052010 - | putative oxidoreductase insB 3053756 - 3053253 - | IS1 ORF2 SFV_2985 3053831 - 3054049 + | putative IS1 encoded protein TERM 3793 3054120 - 3054135 + F 72 -4.8 -4.58859 | TTGTTATGTTCATCA CAAAAT CAAC ATTTTG TTTGTTATTGTATTT TERM 3794 3054532 - 3054512 - g 77 -9.7 -3.64703 | TCCCTTTTATGGAAA GCGTGGAGA AAA TTTCCACGC GTAATCAGGCTGTGG SFV_2986 3054313 - 3055221 + | putative serine protease TERM 3795 3055244 - 3055227 - T 100 -14.1 -5.65513 | opp_overlap 3055227 TACTAAGTAAAAAAA GGGCCGC TTTC GCGGCCC TTCTCACAAAACGTC TERM 3796 3055227 - 3055244 + T 86 -14.1 -3.28924 | opp_overlap 3055227 TACTAAGTAAAAAAA GGGCCGC TTTC GCGGCCC TTCTCACAAAACGTC tktA 3057258 - 3055267 - | transketolase yggG 3057317 - 3058294 + | hypothetical protein TERM 3797 3058455 - 3058424 - T 70 -10.8 -2.52464 | opp_overlap 3058424, overlap 3058434 CGGGTGCCGAACGTA GGTCGGATAAGGCG TTCA CGCCGCATCCGACA TTAATGGCACGTTTT speB 3059415 - 3058495 - | agmatinase TERM 3798 3059048 - 3059038 - G 72 -6.8 -4.1822 | CGGCAGCGTAACAAA GTGG TCA CCAC CGAAGGAGAGCATAC TERM 3799 3059375 - 3059363 - G 77 -3.4 -5.03314 | opp_overlap 3059369 3059372, overlap 3059370 GGCAGGCGTAAAAAA CCAA AGGCA TTGG AAACCAGTGAGTTAT TERM 3800 3059483 - 3059451 - R 100 -14.9 -5.71712 | opp_overlap 3059446 3059451 GTCGATATAAAAAAA CCCTTCCGCGTCG TTAGGCC CGACGAGGAAGGG TTGGATTTGCGAAAC TERM 3801 3059451 - 3059483 + r 90 -14.9 -3.27525 | opp_overlap 3059451, overlap 3059446 GTCGATATAAAAAAA CCCTTCCGCGTCG TTAGGCC CGACGAGGAAGGG TTGGATTTGCGAAAC SFV_2990 3059925 - 3059551 - | lipoprotein insB 3060454 - 3059951 - | IS1 ORF2 SFV_2992 3060529 - 3060717 + | putative IS1 encoded protein TERM 3802 3060781 - 3060742 - T 100 -10 -5.1383 | overlap 3060746 3060773 AAGAATATATAAAAA GAAAGCGGGCCGATTTAC GTAA ATAAATCGACCCGCCAGC GGAATAATCTTAATT TERM 3803 3060777 - 3060746 - T 100 -16 -5.02777 | overlap 3060742 3060773 ATATATAAAAAGAAA GCGGGCCGATTTAC GTAA ATAAATCGACCCGC CAGCGGAATAATCTT speA 3062693 - 3060795 - | arginine decarboxylase TERM 3804 3061100 - 3061090 - G 81 -6.8 -4.59342 | overlap 3061092 CCGACCATAAAGAAA CCGA GCA TCGG CGGATTCTCTGGATC yqgB 3062926 - 3062780 - | hypothetical protein TERM 3805 3062988 - 3062971 - R 81 -8.5 -4.52703 | opp_overlap 3062961 3062983, overlap 3062961 GAAACCACGAGAAAA CTCTTGT TTTT ACAAGAG CGCCCTTGTTCAGTC TERM 3806 3063227 - 3063251 + r 76 -2.2 -5.27335 | gap 1, overlap 3063231 ACCCGGCTGGAAGTG GCAACACGA AAGAAACG TCGTGT-GC TTTTTATTTAAGCCG TERM 3807 3063265 - 3063275 + r 79 -8.2 -4.36914 | GCTTTTTATTTAAGC CGCG CGC CGCG TTTTATACCCCACAA yqgD 3063510 - 3063259 - | hypothetical protein TERM 3808 3064042 - 3064030 - g 91 -9.1 -4.59853 | TGAAGTGCGTAAAAA CGGCA CTC TGCCG TGGCTGCGCCCGGAC TERM 3809 3064641 - 3064629 - g 72 -5.5 -4.57482 | opp_overlap 3064629 CGATCTACAAAGAAA CCGCA GCA TACGG TCACTTTGGTCGTGA TERM 3810 3064706 - 3064677 - g 74 -2.7 -5.00616 | gap 1, overlap 3064685 TCCCGTGGGAAAAAA CCGACAAAGCGCAG CTG CTGCGCGATG-CTG CCGGTCTGAAGTAAT TERM 3811 3064699 - 3064685 - g 91 -11.4 -4.11869 | overlap 3064677 GAAAAAACCGACAAA GCGCAG CTG CTGCGC GATGCTGCCGGTCTG metK 3063566 - 3064720 + | S-adenosylmethionine synthetase TERM 3812 3064761 - 3064743 - f 86 -11.7 -3.53444 | opp_overlap 3064743 TCACCTGCGTTCAAA GGCCAGC CTCGC GCTGGCC TTTTTCTTTTACCTC TERM 3813 3064743 - 3064761 + F 100 -11.7 -5.48213 | opp_overlap 3064743 TCACCTGCGTTCAAA GGCCAGC CTCGC GCTGGCC TTTTTCTTTTACCTC TERM 3814 3065074 - 3065093 + F 78 -6.5 -4.68994 | overlap 3065054 GTAAGCGATTACACT GATGTGA TTTGCT TCACATC TTTTTACGTCGTACT galP 3065155 - 3066549 + | galactose:proton symporter, MFS family TERM 3815 3066809 - 3066834 + G 75 -5.5 -4.63486 | ATCCGCCTCAATCCC GTTTTGCTGTT GGAA AACAGTGAAGC TTTTATTGAAGAAGT sprT 3066626 - 3067123 + | hypothetical protein TERM 3816 3067456 - 3067442 - g 71 -2.7 -4.77757 | overlap 3067443 GCGCAAAAATGAAAA CCGCG CCAGC CGCGT AGAGTGGGAACACGT TERM 3817 3067714 - 3067698 - g 87 -4.3 -5.28942 | opp_overlap 3067713, overlap 3067710 GATTTCAAAGAAAAA GCTGCCG AAC CACCAGC GCGTGCACGCGGTGC endA 3067218 - 3067925 + | DNA-specific endonuclease I TERM 3818 3067973 - 3067995 + F 72 -4.7 -4.71061 | opp_overlap 3067974, overlap 3067974 TACCCCACGCGTACA ACCGCGTGG GGAGA CGACGCGGA TTTTTAACTATGCGT yggJ 3068005 - 3068736 + | hypothetical protein TERM 3819 3069638 - 3069658 + G 74 -11.2 -3.1552 | opp_overlap 3069636, overlap 3069636 AGATTGAAGCAGAGT TTCCGGTG TCGAT CACCGGAA TGTTAATGGATGCCA gshB 3068749 - 3069699 + | glutathione synthetase TERM 3820 3069736 - 3069776 + G 71 -2.3 -5.00616 | TCGTTGAGACTCTGA GTGACAGCGCCCTTCTTTC CAC GCATACTGGGCGCTGTTGC TTTTTTGAACCAGGA yqgE 3069736 - 3070371 + | hypothetical protein TERM 3821 3070677 - 3070689 + G 70 -4.7 -4.56597 | overlap 3070672 CTTAGCACTGTGGAA GCCCG TTC CGGTC TTTTTGAACAGGGCG TERM 3822 3070742 - 3070725 - g 76 -7.7 -4.15044 | opp_overlap 3070738 CGGGCGCTCAACAAA GGCAAAG TTGA CTCTGCC TCTGCGGTTATTATT yqgF 3070371 - 3070787 + | Holliday junction resolvase-like protein TERM 3823 3070880 - 3070913 + T 79 -8.1 -4.30933 | opp_overlap 3070890, overlap 3070881 CTGGCAGCGGCTGTA GGTCTGATAAGACGC GTTA GCGTCGCATCAGACA TTTATTGCCTTTATA TERM 3824 3070881 - 3070912 + T 79 -11.6 -3.17475 | opp_overlap 3070890, overlap 3070880 TGGCAGCGGCTGTAG GTCTGATAAGACGC GTTA GCGTCGCATCAGAC ATTTATTGCCTTTAT yggR 3071943 - 3070963 - | putative transport protein TERM 3825 3072010 - 3072031 + G 83 -12.3 -3.28791 | GGGACAAAATCTCAG CGGCTGCAA CGCG TTGCGGCCG TTCTCCAGAAGAAAT TERM 3826 3072094 - 3072075 - g 83 -5.7 -5.13722 | overlap 3072076 GTCAGTAAAACAAAA CCTGCGA GCGCCA TCGCAGA AGCCATTGATGCCGG TERM 3827 3072241 - 3072229 - g 72 -4.7 -4.65916 | overlap 3072196 3072230 TGCAGTCTAATAAAA GCCGC CTA GTGGC AGAGCATTTCGACTG yggS 3071961 - 3072665 + | hypothetical protein yggT 3072683 - 3073249 + | putative resistance protein TERM 3828 3073471 - 3073456 - g 70 -3.9 -4.65895 | GTGGTGATTGAAAAA GGCGA ACTTGG CCGCC ACAAACAAATTAAAA yggU 3073234 - 3073536 + | hypothetical protein TERM 3829 3073597 - 3073612 + G 78 -9 -3.96093 | AGTGCGTGAGCTGGC GTCGCT GCTT AGCGAC TTTGGTCTTGATATC TERM 3830 3073780 - 3073803 + G 77 -10.2 -3.65046 | overlap 3073772 AGATGCGCTGGGTGG CGCGCCGGGT ATTT ACTCCGCGCG TTATTCCGGTGAAGA yggV 3073544 - 3074137 + | putative deoxyribonucleotide triphosphate pyrophosphatase yggW 3074130 - 3075266 + | coproporphyrinogen III oxidase TERM 3831 3075263 - 3075300 + F 81 -8.5 -4.37658 | opp_overlap 3075252 3075267 3075270 3075274, overlap 3075252 3075266 3075267 3075270 3075274 ATTATTCCTCGCTGA GTAATCATTAATGCGCC TGCG GGCGCATTAATCACTTC TTTTATCCCCCCGTT TERM 3832 3075266 - 3075297 + F 83 -8.8 -4.30995 | opp_overlap 3075267 3075270 3075274, overlap 3075263 3075267 3075270 3075274 ATTCCTCGCTGAGTA ATCATTAATGCGCC TGCG GGCGCATTAATCAC TTCTTTTATCCCCCC TERM 3833 3075296 - 3075267 - f 81 -12.3 -3.14132 | opp_overlap 3075266 3075263 3075267 3075270 3075274, overlap 3075270 3075274 TTCCTCGCTGAGTAA TCATTAATGCGCC TGCG GGCGCATTAATCA CTTCTTTTATCCCCC TERM 3834 3075267 - 3075296 + F 81 -12.3 -3.18115 | opp_overlap 3075267 3075270 3075274, overlap 3075266 3075263 3075270 3075274 TTCCTCGCTGAGTAA TCATTAATGCGCC TGCG GGCGCATTAATCA CTTCTTTTATCCCCC TERM 3835 3075293 - 3075270 - f 84 -14 -2.77899 | opp_overlap 3075270 3075267 3075266 3075263 3075274, overlap 3075267 3075274 CTCGCTGAGTAATCA TTAATGCGCC TGCG GGCGCATTAA TCACTTCTTTTATCC TERM 3836 3075270 - 3075293 + F 84 -14 -2.78052 | opp_overlap 3075267 3075270 3075274, overlap 3075267 3075266 3075263 3075274 CTCGCTGAGTAATCA TTAATGCGCC TGCG GGCGCATTAA TCACTTCTTTTATCC TERM 3837 3075274 - 3075289 + F 74 -10.4 -3.26842 | opp_overlap 3075270 3075267 3075274, overlap 3075270 3075267 3075266 3075263 CTGAGTAATCATTAA TGCGCC TGCG GGCGCA TTAATCACTTCTTTT TERM 3838 3075289 - 3075274 - f 74 -10.4 -3.29096 | opp_overlap 3075274 3075270 3075267 3075266 3075263, overlap 3075270 3075267 CTGAGTAATCATTAA TGCGCC TGCG GGCGCA TTAATCACTTCTTTT SFV_3010 3075580 - 3075933 + | hypothetical protein SFV_3011 3075950 - 3076543 + | hypothetical protein TERM 3839 3076570 - 3076546 - f 73 -9.9 -3.38812 | opp_overlap 3076547 3076550, overlap 3076544 3076547 CGCTGCTCAATAATA TTCCGGGCCAG CCT CTGGCCCTGAT TTTCCAGGATGCTTA TERM 3840 3076569 - 3076547 - f 81 -13.4 -2.63073 | opp_overlap 3076547 3076550, overlap 3076546 3076544 GCTGCTCAATAATAT TCCGGGCCAG CCT CTGGCCCTGA TTTTCCAGGATGCTT TERM 3841 3076547 - 3076569 + F 95 -13.4 -4.10429 | opp_overlap 3076547 3076546 3076544, overlap 3076550 GCTGCTCAATAATAT TCCGGGCCAG CCT CTGGCCCTGA TTTTCCAGGATGCTT TERM 3842 3076550 - 3076566 + F 85 -13.7 -3.08508 | opp_overlap 3076547 3076546 3076544, overlap 3076547 GCTCAATAATATTCC GGGCCAG CCT CTGGCCC TGATTTTCCAGGATG TERM 3843 3076621 - 3076635 + G 77 -7 -4.53303 | overlap 3076611 3076626 AAACTTGCGGTAGAC CGCGTC ATT GCCGCG TTTTCTGTCGCCGTA SFV_3012 3076588 - 3077091 + | hypothetical protein TERM 3844 3077443 - 3077457 + G 77 -11.4 -3.14564 | CTGGTTCAGCCGTTG CGGCAG CTG CTGCCG TTGGTGGCACACTGA TERM 3845 3077730 - 3077716 - g 74 -8.6 -3.85817 | ACCCGCTTTCAGAAA GAGCAA CCT TTGCTC AGGCCTGTAAAGCAT SFV_3013 3077091 - 3078392 + | hypothetical protein TERM 3846 3078436 - 3078397 - T 75 -3 -5.15969 | gap 1, overlap 3078400 GGCTAATGTAAAAAA TA-ATTTGCCGGATAACTT TTT ATATTATCCGGCAAAGGCA CTTAACATGAGTTAC TERM 3847 3078432 - 3078400 - T 100 -12.9 -4.67173 | overlap 3078397 TAATGTAAAAAATAA TTTGCCGGATAACTT TTT ATATTATCCGGCAAA GGCACTTAACATGAG yggM 3079419 - 3078448 - | putative alpha helix chain TERM 3848 3079333 - 3079345 + g 71 -3.3 -4.76892 | opp_overlap 3079333 ATCAAGCTTGAGAAT GCCGT GAT ACTGC TTTTTGAATTGATCT TERM 3849 3079564 - 3079544 - R 100 -14.7 -4.74103 | opp_overlap 3079545 GTCTGAAGTGAAAAA GCCCCGGCA CGA TGCCGGGAC GAGGTGATTAGTACT ansB 3080618 - 3079572 - | L-asparaginase II TERM 3850 3080778 - 3080756 - R 79 -9.2 -4.12315 | opp_overlap 3080756 AAACGAAGAATTAAA CGGCATAAAA AAG TATTATGCCG TCTTAAAATAGAGGA yggN 3081510 - 3080794 - | hypothetical protein TERM 3851 3080871 - 3080890 + g 77 -6.4 -4.63184 | opp_overlap 3080870 CATCTTTGCCAAACT GCTGGAAA TCTT TTTCCTGC TTTTTCCACTCGGTT TERM 3852 3081442 - 3081420 - G 73 -12 -2.82623 | overlap 3081417 3081422 GCGGGCTGACAATCA CATCGTCACG CGG CGTGACGCTG CACTGGTAGTCGGCG TERM 3853 3081484 - 3081500 + g 74 -8 -4.12188 | opp_overlap 3081484 3081483 TGCCGTCACTGAAAG TGCTGC CGCCA GCAGCA TTTTGCGCATCATAG TERM 3854 3081557 - 3081534 - R 86 -8.8 -4.44667 | overlap 3081537 TCCCTCAAGAACAAA TCAGGCCAGC ATAT GCTGGCCCCA GATTGATAACAAAGT TERM 3855 3081554 - 3081537 - R 81 -12.7 -3.19055 | overlap 3081534 CTCAAGAACAAATCA GGCCAGC ATAT GCTGGCC CCAGATTGATAACAA yggL 3082023 - 3081697 - | hypothetical protein trmB 3082742 - 3082023 - | tRNA (guanine-N(7))-methyltransferase TERM 3856 3083746 - 3083731 - g 72 -10.4 -3.28924 | CATTGGCTGGCACAA CGGCAG ATTG CTGCCG ATAACCTGACGCAAC mutY 3082873 - 3083955 + | adenine DNA glycosylase SFV_3021 3084225 - 3083932 - | hypothetical protein TERM 3857 3084165 - 3084145 - Gg 73 -4 -4.78981 | overlap 3084159 ATTAATGAAAAGAAA CTCAACAT GATGA ATGCCGAG CACCGCAAGCTGCTG yggX 3083983 - 3084258 + | hypothetical protein TERM 3858 3084289 - 3084262 - fH 93 -6.3 -5.8096 | gap 1, opp_overlap 3084264, overlap 3084264 3084265 GATAAAAAATAAAAA CAG-TGCCGGAG CACGC CTCCGGCAGCTT GCATAAAAACAAACA TERM 3859 3084286 - 3084264 - fH 86 -9.1 -4.48934 | opp_overlap 3084264, overlap 3084262 3084265 TAAAAAATAAAAACA GTGCCGGAG CACGC CTCCGGCAG CTTGCATAAAAACAA TERM 3860 3084285 - 3084265 - fH 81 -12.6 -3.257 | opp_overlap 3084264, overlap 3084264 3084262 AAAAAATAAAAACAG TGCCGGAG CACGC CTCCGGCA GCTTGCATAAAAACA mltC 3084320 - 3085402 + | murein transglycosylase C nupG 3085604 - 3086860 + | permease protein for nucleosides TERM 3861 3086865 - 3086908 + T 90 -14 -3.34013 | opp_overlap 3086876, overlap 3086876 TTAGCCACTAATTAC GCAAAGAAAAACGGGTCGCC AGAA GGTGACCCGTTTTTTTATTC TTACTTCAACACATA TERM 3862 3086876 - 3086897 + T 100 -13.7 -5.95946 | opp_overlap 3086876, overlap 3086865 TTACGCAAAGAAAAA CGGGTCGCC AGAA GGTGACCCG TTTTTTTATTCTTAC TERM 3863 3086897 - 3086876 - T 100 -11.5 -5.30616 | opp_overlap 3086876 3086865 TTACGCAAAGAAAAA CGGGTCGCC AGAA GGTGACCCG TTTTTTTATTCTTAC speC 3089104 - 3086909 - | ornithine decarboxylase TERM 3864 3087218 - 3087229 + g 76 -3.6 -4.92363 | CGGGAAACTCTGCTG GCGG AACA TCGC TTTTTGTAGGTCTTT TERM 3865 3087949 - 3087936 - G 72 -5.2 -4.57569 | overlap 3087905 TTATGCGGGCAAAAA CGCG CCTGTC CGCG GATATGGTTATCTTT TERM 3866 3087950 - 3087961 + g 82 -3 -5.29782 | ACGCGCCTGTCCGCG GATA TGGT TATC TTTTTTATGGATCTG TERM 3867 3088637 - 3088652 + g 77 -6.8 -4.56597 | opp_overlap 3088637 GAAATCGTAAAAATG GCGTCC GGCA GGATGC TTTTTAAAGAACGCA TERM 3868 3088886 - 3088865 - G 90 -7.3 -5.0916 | overlap 3088882 TTCGGAATACAAAAA CACCGGT AGATGAAA ACCGGTG CGCTTAAGCAACGCA TERM 3869 3089148 - 3089178 + H 73 -9.9 -3.41602 | opp_overlap 3089147 3089150 3089157 CCGACCGCCAGACAT CAGTAAAAGCAGA AACGC TCTGATTTTACTG TTGTCCTGCAGTGAG TERM 3870 3089253 - 3089238 - H 71 -7.6 -3.92005 | ACATAGAAAGGGAAA CGTTTC GCGC GAAACG GCGATAAGCGAGAGA yqgA 3089442 - 3090149 + | putative transport protein TERM 3871 3090297 - 3090281 - f 73 -10.9 -2.62616 | opp_overlap 3090280 3090279 3090276 TCAGTCGGTAGAGCA GGGGATT GAA AATCCCC GTGTCCTTGGTTCGA TERM 3872 3090359 - 3090344 - f 83 -10.4 -3.82824 | opp_overlap 3090344 CACTATTTAGAAGAA CCAGCC TACG GGCTGG TTTTTTGCTTTCTGG TERM 3873 3090344 - 3090359 + F 100 -10.4 -5.42514 | opp_overlap 3090344 CACTATTTAGAAGAA CCAGCC TACG GGCTGG TTTTTTGCTTTCTGG TERM 3874 3090468 - 3090480 + F 72 -5.5 -4.53705 | AAGTAGCCCCCTTCT GGTCA CTG TGGCC TTTTCTGTCAAACTT SFV_3027 3090930 - 3091220 + | hypothetical protein insB 3091862 - 3091359 - | IS1 ORF2 SFV_3029 3091937 - 3092239 + | putative IS1 encoded protein TERM 3875 3093414 - 3093440 + T 77 -7.3 -4.39696 | opp_overlap 3093414 ACAGACAAATGGAAA GCCGGGTGA TATTTACCT TCATCCGGC TTTATTGATTTACGA yghK 3095045 - 3093450 - | putative permease TERM 3876 3093792 - 3093780 - G 71 -3.3 -4.86033 | overlap 3093791 AAACGGTGAGAAAAA CGGGA ACA TCACG CCTGTACCTGCCAGT TERM 3877 3093996 - 3093983 - G 81 -4.5 -5.06414 | overlap 3093969 3093986 TCGCCGCAATAAAAA TAGCG GTGC CGCCA GCCGAGAGAGGGTCG TERM 3878 3094302 - 3094314 + g 72 -5.5 -4.56597 | TTGCCCCATGCTGAT TGCCG TTT CGGTA TTTTTCGGCCGCCAG TERM 3879 3095386 - 3095361 - R 79 -12.6 -2.83164 | opp_overlap 3095361 GCAGTTACTATCATA GCCCCGACAA TAAAAC TTGCCGGGGC TTTTTTGACGCTATT TERM 3880 3095361 - 3095386 + r 100 -10.4 -5.04987 | opp_overlap 3095361 GCAGTTACTATCATA GCCCCGACAA TAAAAC TTGCCGGGGC TTTTTTGACGCTATT glcB 3097571 - 3095400 - | malate synthase G glcG 3097997 - 3097593 - | hypothetical protein TERM 3881 3097799 - 3097814 + g 72 -7.5 -3.96327 | TTTCACGACGCCCCA GCGCG GCGGTA CGCGC TTTCTCCTGGGAGAT TERM 3882 3099154 - 3099186 + H 79 -11.1 -3.3095 | opp_overlap 3099154, overlap 3099155 TCCGCAGTGAACACA GGCGCGCAGGATGCT GTC GGCTTCCAGCGCGCG TTCTGCCGCATCTCT TERM 3883 3099186 - 3099154 - H 73 -10.4 -3.10344 | opp_overlap 3099154 3099155 TCCGCAGTGAACACA GGCGCGCAGGATGC TGTCG GCTTCCAGCGCGCG TTCTGCCGCATCTCT TERM 3884 3099155 - 3099185 + H 86 -14.6 -2.58249 | opp_overlap 3099154, overlap 3099154 CCGCAGTGAACACAG GCGCGCAGGATGCT GTC GGCTTCCAGCGCGC GTTCTGCCGCATCTC TERM 3885 3099951 - 3099929 - H 72 -5.4 -4.46212 | overlap 3099930 3099931 3099941 GTGCCGAGGACAAAA TCGCGGACCG AAC CGCTCCACGG GCGACGCGGCCCCGC glcC 3102034 - 3102876 + | DNA-binding transcriptional regulator GlcC SFV_3036 3103264 - 3102935 - | hypothetical protein SFV_3037 3104076 - 3103231 - | hypothetical protein TERM 3886 3103489 - 3103500 + gr 90 -4.4 -5.40072 | CACCTTTTTGCGCAC CTGA TCCA TCAG TTTTTTTAGCGCCGG TERM 3887 3103910 - 3103921 + gr 74 -5.8 -4.56597 | TGCCAGATGATATGG TCCG TCCC CGGA TTTTTCGCAGACAAA SFV_3038 3104536 - 3104285 - | putative IS1 encoded protein insB 3104611 - 3105114 + | IS1 ORF2 TERM 3888 3105673 - 3105637 - T 83 -13.2 -3.16668 | opp_overlap 3105638 3105672 GAATATTTTGATTAA TCCCCGTACTAATTAT TCTTC ATAATCAGTACGGGGT TGCTACAACATGTAT TERM 3889 3105638 - 3105672 + T 90 -14.5 -3.15249 | opp_overlap 3105637 AATATTTTGATTAAT CCCCGTACTAATTAT TCTTC ATAATCAGTACGGGG TTGCTACAACATGTA gsp 3107550 - 3105688 - | bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase TERM 3890 3108209 - 3108230 + G 72 -5.8 -4.34771 | gap 1 TCTGGTTACAGGGTG CCGC-GCCG TTCCT CGGCGGTGG TTTTGGTCACTTTTA TERM 3891 3108412 - 3108438 + G 81 -10.1 -3.91897 | TTTGGCAACGTGGTG CTCGGCGGCGT GTATG ATGCCGCAGAG TTTCTGGATGCGGGA SFV_3042 3107752 - 3108618 + | putative glutathione S-transferase YghU TERM 3892 3108725 - 3108692 - T 73 -9.5 -3.31322 | opp_overlap 3108699 3108700 3108702, overlap 3108660 3108693 GGCAATCGTGCACAA TGCCTGATGCGACGC TGCC GCGTCTTATCAGGCC TACAAAAGCTAATCA TERM 3893 3108724 - 3108693 - T 81 -13 -2.58579 | opp_overlap 3108699 3108700 3108702, overlap 3108660 3108692 GCAATCGTGCACAAT GCCTGATGCGACGC TGCC GCGTCTTATCAGGC CTACAAAAGCTAATC hybG 3108989 - 3108741 - | hydrogenase 2 accessory protein HypG hybF 3109464 - 3109123 - | hydrogenase nickel incorporation protein HybF TERM 3894 3109366 - 3109331 - G 88 -8.4 -4.67641 | gap 2, opp_overlap 3109331 3109332, overlap 3109332 3109333 3109335 ATTTCAAAACTAAAA CGGACGGCGCTCTCCT CAACGC AGGAGAGCGC-G-CCA ATTTCCAGCCACACG TERM 3895 3109365 - 3109332 - G 72 -9.7 -3.395 | gap 2, opp_overlap 3109332 3109331, overlap 3109331 3109333 3109335 TTTCAAAACTAAAAC GGACGGCGCTCTCCT CAACGC AGGAGAGCGC-G-CC AATTTCCAGCCACAC TERM 3896 3109365 - 3109333 - G 76 -12.1 -2.62977 | gap 1, opp_overlap 3109332 3109331, overlap 3109332 3109331 3109335 TTCAAAACTAAAACG GACGGCGCTCTCCT CAACGC AGGAGAGCGC-GCC AATTTCCAGCCACAC TERM 3897 3109363 - 3109335 - G 71 -11.1 -2.84272 | gap 1, opp_overlap 3109332 3109331, overlap 3109332 3109333 3109331 CAAAACTAAAACGGA CGGCGCTCTCCT CAACGC AGGAGAGCGC-G CCAATTTCCAGCCAC hybE 3109945 - 3109457 - | hydrogenase 2-specific chaperone TERM 3898 3109510 - 3109487 - G 90 -13.2 -3.53012 | gap 1, opp_overlap 3109474 3109488, overlap 3109489 CCTCCTGCGGCCAAA CA-GCAGGGCG CGA CGCCCTGCGTG TGGTACATCCGGATT TERM 3899 3109488 - 3109508 + g 77 -12.5 -2.80816 | opp_overlap 3109487 3109489, overlap 3109474 CTCCTGCGGCCAAAC AGCAGGGCG CGA CGCCCTGCG TGTGGTACATCCGGA TERM 3900 3109507 - 3109489 - G 100 -16 -3.34398 | opp_overlap 3109488 3109474, overlap 3109487 TCCTGCGGCCAAACA GCAGGGCG CGA CGCCCTGC GTGTGGTACATCCGG hybD 3110432 - 3109938 - | hydrogenase 2 maturation endopeptidase TERM 3901 3110079 - 3110094 + g 70 -4.6 -4.57569 | CGATTCCGGGATCAC GCCGAC CAGG GTCAGC TTTTTCGGAAACTCA hybC 3112135 - 3110432 - | hydrogenase 2 large subunit TERM 3902 3111106 - 3111118 + g 78 -10.5 -3.50335 | overlap 3111102 3111114 TGGTACCTTCCCACG GCGCC TGT GGCGC TTCGTCTTTATACCA TERM 3903 3111981 - 3111995 + g 72 -4.9 -4.61633 | opp_overlap 3111973, overlap 3111984 3111988 ACAATCATCCATGCA TCGCG CGGAT CGCGG TTTTTCACGATCTCT TERM 3904 3112154 - 3112165 + r 76 -4.4 -5.07652 | overlap 3112143 3112148 TTGCTCGCCTCATGA CGAT TATG ATCG TTTTGTTTTAAAGGA hybB 3113310 - 3112132 - | putative hydrogenase 2 b cytochrome subunit hybA 3114286 - 3113300 - | hydrogenase 2 protein HybA TERM 3905 3113943 - 3113956 + g 72 -6.7 -4.29106 | CAGTTCGGATCGACG CAGTG CATA CACTG TTTCTTAATGTACGC SFV_3050 3115353 - 3114289 - | hydrogenase 2 small subunit SFV_3051 3115883 - 3115596 - | hypothetical protein yghYX 3116889 - 3116002 - | hydrolase TERM 3906 3117597 - 3117610 + G 70 -4.5 -4.45544 | CGAGTTGCTGCACGA GTGGA AAAT TCCGC TTTTAATTCATCAAC SFV_3053 3117046 - 3118086 + | aldo-keto reductase TERM 3907 3118118 - 3118098 - T 100 -15.4 -3.62775 | overlap 3118087 ATGACCTGTTAATAA CGGGCGCG CGAAC CGCGCCCG AATCAGATCAGTGAT yqhA 3118650 - 3118126 - | hypothetical protein yghA 3118811 - 3119695 + | oxidoreductase TERM 3908 3119701 - 3119727 + T 87 -14.5 -2.86539 | opp_overlap 3119701, overlap 3119680 3119698 TTTAGGTTAAAAAAA TGCCCGGTTGT GAAAA GCAACCGGGCA TCATTGTGAATTCAC TERM 3909 3119727 - 3119701 - T 100 -13.8 -5.44119 | opp_overlap 3119680 3119698 3119701 TTTAGGTTAAAAAAA TGCCCGGTTG TGAAAAG CAACCGGGCA TCATTGTGAATTCAC TERM 3910 3119932 - 3119958 + T 72 -10.8 -2.82261 | overlap 3119931 GCAATAGATTTTGTA GGCCTGATGAGC GTA GCGCATCAGGCA ATTCTACTTTATTTC exbD 3120392 - 3119967 - | biopolymer transport protein ExbD exbB 3121118 - 3120399 - | biopolymer transport protein ExbB TERM 3911 3121382 - 3121372 - g 79 -4.6 -4.89852 | CCAGACGTATAAAAA CAGG AAT CCCG ACATGGCGGACAAAA TERM 3912 3121525 - 3121513 - g 85 -6.9 -4.75174 | overlap 3121516 TATGGAAGCCAAAAA GCACG CGA CGCGC AATCGCGCCAATGGC metC 3121250 - 3122572 + | cystathionine beta-lyase TERM 3913 3123074 - 3123100 + G 73 -4.2 -4.76213 | CATGTTTGACCGCCA CGGTCTGCTGGC GCT GCTGGCTGGACG TTTTCTTGCATTTGT yghB 3122712 - 3123371 + | hypothetical protein TERM 3914 3123382 - 3123407 + F 86 -11.9 -3.5486 | overlap 3123380 CCTGACGATTTTCCC CGTTCCCGG CTGCTGTA CCGGGAACG TATTTAATTCCCCTG TERM 3915 3125406 - 3125391 - g 71 -3.2 -4.8622 | CTGTGGAATGAAAAA CGCG AGACCAAG CGCG CTAAGCTGCTGCAAT yqhD 3124503 - 3125666 + | putative oxidoreductase TERM 3916 3125753 - 3125724 - f 100 -16.5 -3.36968 | opp_overlap 3125726, overlap 3125726 GACTTAAGTTCACAA CACCTCACCGGAG CCTG CTCCGGTGAGGTC ATATAAAGGAGGAAC TERM 3917 3125751 - 3125726 - f 100 -19.1 -3.25192 | opp_overlap 3125726, overlap 3125724 CTTAAGTTCACAACA CCTCACCGGAG CCTG CTCCGGTGAGG TCATATAAAGGAGGA TERM 3918 3125726 - 3125751 + F 100 -19.1 -2.62184 | opp_overlap 3125724 3125726 CTTAAGTTCACAACA CCTCACCGGAG CCTG CTCCGGTGAGG TCATATAAAGGAGGA dkgA 3125771 - 3126598 + | 2,5-diketo-D-gluconate reductase A TERM 3919 3126610 - 3126640 + F 73 -7.4 -4.10429 | overlap 3126611 CTAACGTGCAAATTC TCCCGGTGGCGGTA ATG TTCCGCTACCGGAC TTTTCAGAAATCATT TERM 3920 3126611 - 3126639 + F 75 -10.9 -3.05775 | overlap 3126610 TAACGTGCAAATTCT CCCGGTGGCGGTA ATG TTCCGCTACCGGA CTTTTCAGAAATCAT yqhG 3126798 - 3127724 + | hypothetical protein yqhH 3127775 - 3128032 + | putative outer membrane lipoprotein TERM 3921 3128068 - 3128041 - T 100 -12.7 -5.73339 | opp_overlap 3128041 AGAATGATAAAAAAA TCCCCGGCAGC ATGTCA GTTGCCGGGGA TTTTTTTTAACGTCC TERM 3922 3128041 - 3128068 + T 100 -14.9 -5.78622 | opp_overlap 3128041 AGAATGATAAAAAAA TCCCCGGCAGC ATGTCA GTTGCCGGGGA TTTTTTTTAACGTCC TERM 3923 3128134 - 3128146 + T 84 -4.8 -5.44119 | TCACCGGACGAGATT GCGT AGACG ACGC TTTTTTTGCCGTAGC TERM 3924 3129102 - 3129085 - T 74 -6.9 -4.25957 | overlap 3129082 ATAGAACAGAAAGAA CAGCCGC CAAA GCAGCCG CGCATAATGTTGACC TERM 3925 3130368 - 3130327 - T 71 -7.4 -3.93913 | gap 1, overlap 3130328 3130331 AAAGAGAAATCGAAA GGTAT-TCCATACTCGCCC TCCTC GGGCGAGTATGAAGATTAC GGTACCGGATTGACC TERM 3926 3130363 - 3130331 - T 78 -12.8 -2.6993 | overlap 3130327 3130328 AGAAATCGAAAGGTA TTCCATACTCGCCC TCCTC GGGCGAGTATGAAG ATTACGGTACCGGAT sufI 3131777 - 3130365 - | repressor protein for FtsI plsC 3132589 - 3131852 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase parC 3135081 - 3132823 - | DNA topoisomerase IV subunit A TERM 3927 3134252 - 3134273 + g 84 -10.9 -3.74693 | ACCATCGGCAGCTTT TTGTTGCGC ATTT GCGCAGCAA TTTGCTCCAGTACGC TERM 3928 3135210 - 3135184 - R 75 -11.5 -3.0497 | AGATCAGCGTGAATA GCGCCGCCGGA CGTGC TCCGACGGCGA TAAAGGCATCAATGT SFV_3069 3136109 - 3135627 - | hypothetical protein ygiW 3136554 - 3136162 - | hypothetical protein qseB 3136733 - 3137365 + | DNA-binding transcriptional regulator QseB TERM 3929 3137614 - 3137593 - g 70 -3.7 -4.72863 | CCAAATAAATTAAAA CACGGTCAT GTTG ATGACGATG CGCTGACCTTTGCCA qseC 3137362 - 3138711 + | sensor protein QseC TERM 3930 3138720 - 3138751 + F 100 -14.6 -4.30576 | opp_overlap 3138729 CTGGTAACTTCTCTG TCTATGAGAGCCGT TAAA ACGACTCTCATAGA TTTTACTAATAGCAA TERM 3931 3139123 - 3139143 + F 74 -5.5 -4.56729 | opp_overlap 3139123 3139122 3139125 AAATCCATTTATAAT TATCAACAT GAC ACGTTGATA TTTTCATCTTTTACT TERM 3932 3139525 - 3139470 - g 81 -12.6 -3.18199 | gap 1, opp_overlap 3139478 3139502, overlap 3139473 CAATGGTCAACTGAA CGACACCCTGACCGAAGTCGCGGA-TG GCA CACTGCGCGACCTCGGGCATGATGTCC GCATCGTTCGCGCCG TERM 3933 3139522 - 3139473 - g 81 -12.9 -2.78712 | gap 1, opp_overlap 3139478 3139502, overlap 3139470 TGGTCAACTGAACGA CACCCTGACCGAAGTCGCGGA-TG GCA CACTGCGCGACCTCGGGCATGATG TCCGCATCGTTCGCG mdaB 3139408 - 3139989 + | modulator of drug activity B ygiN 3140020 - 3140334 + | hypothetical protein TERM 3934 3140344 - 3140372 + T 71 -7.3 -4.15396 | overlap 3140346 ATTTAATCCTGCCTT GTTTGCCCGGCCA TCC TGACCGGGCAATG TTCTTTCCTTTAAAC TERM 3935 3140346 - 3140370 + T 100 -14.3 -3.66578 | overlap 3140344 TTAATCCTGCCTTGT TTGCCCGGCCA TCC TGACCGGGCAA TGTTCTTTCCTTTAA parE 3142274 - 3140382 - | DNA topoisomerase IV subunit B TERM 3936 3142003 - 3141978 - G 78 -10.5 -3.48395 | ATTTTTGTTAGAGAA TTTACCGCCTG CATG CAGACGGCAAA GAATCAGTTCAACCG yqiA 3142884 - 3142303 - | esterase YqiA icc 3143711 - 3142884 - | cyclic 3',5'-adenosine monophosphate phosphodiesterase TERM 3937 3143695 - 3143663 - G 100 -13.5 -4.14392 | opp_overlap 3143654 3143653, overlap 3143664 CGGTAATTTGTAAAA TCCTTCCTCTGGC CTCACCT GCCAGAGGAAGGG TTAACAGGCTTTCCA TERM 3938 3143694 - 3143664 - G 100 -17 -3.08314 | opp_overlap 3143654 3143653, overlap 3143663 GGTAATTTGTAAAAT CCTTCCTCTGGC CTCACCT GCCAGAGGAAGG GTTAACAGGCTTTCC yqiB 3144158 - 3143736 - | hypothetical protein TERM 3939 3143825 - 3143835 + g 83 -5.4 -5.08601 | GATGCTTTTCGTCGC GTTG ATG CAAC TTTTTATTAGGATAA TERM 3940 3144183 - 3144235 + r 74 -6.9 -4.20712 | overlap 3144191 CTCATTTTTTAACGC TTGATGATGCAGCTGCAGCCATTGC AAA GCGATGACCGACGCTGCGTTGTCGA TTTTCCCCTCTTCTA nudF 3144788 - 3144159 - | ADP-ribose pyrophosphatase NudF tolC 3144993 - 3146474 + | outer membrane channel protein TERM 3941 3146701 - 3146712 + G 71 -2.2 -4.9218 | overlap 3146700 CACCAGTCGCTCTCG CGGT TGCC ACTG TTTTTATGCTGGCTG TERM 3942 3147152 - 3147122 - g 88 -8.3 -4.59773 | gap 1, overlap 3147123 3147125 CGCGACGGGTAAAAA CTATGGCGCAGCCC AGCC AGGCCGCACCAT-G ACCGTACCGAAGACG TERM 3943 3147150 - 3147125 - g 74 -11.1 -3.24422 | overlap 3147122 3147123 GACGGGTAAAAACTA TGGCGCAGCCC AGCC AGGCCGCACCA TGACCGTACCGAAGA TERM 3944 3147259 - 3147241 - g 70 -5.2 -4.41348 | CTGTTGCCAAACAAA GCACTATG CAG CGTAGCGC AACCGGCACCTCTTC ygiB 3146622 - 3147293 + | hypothetical protein TERM 3945 3147361 - 3147405 + G 70 -10.2 -3.16742 | gap 1, opp_overlap 3147375, overlap 3147364 CCACGAATACGGTTT CAATTTTCACACCATGTACGG CGAG CCGTAC-TGGTGTGAAGATGC TTACTACAAGTTGAC TERM 3946 3147364 - 3147402 + G 100 -16.3 -2.78395 | gap 1, opp_overlap 3147375, overlap 3147361 CGAATACGGTTTCAA TTTTCACACCATGTACGG CGAG CCGTAC-TGGTGTGAAGA TGCTTACTACAAGTT ygiC 3147299 - 3148459 + | putative synthetase/amidase TERM 3947 3148501 - 3148460 - T 75 -9.6 -3.61517 | gap 2, opp_overlap 3148466 3148467 3148469, overlap 3148469 ATTTTTGTTGAATAA GCCA-CGA-TACCGGATGGC ACTC GCCATCCGGTAATTGTTAGC CTATCTGCACCGACA TERM 3948 3148466 - 3148493 + T 100 -14.2 -3.67558 | opp_overlap 3148460 3148469, overlap 3148467 3148469 GTTGAATAAGCCACG ATACCGGATGGC ACTC GCCATCCGGTAA TTGTTAGCCTATCTG TERM 3949 3148467 - 3148492 + T 100 -17.7 -2.80053 | opp_overlap 3148460 3148469, overlap 3148466 3148469 TTGAATAAGCCACGA TACCGGATGGC ACTC GCCATCCGGTA ATTGTTAGCCTATCT TERM 3950 3148490 - 3148469 - T 93 -15.9 -2.84619 | opp_overlap 3148469 3148467 3148466, overlap 3148460 GAATAAGCCACGATA CCGGATGGC ACTC GCCATCCGG TAATTGTTAGCCTAT TERM 3951 3148469 - 3148490 + T 93 -15.9 -2.94313 | opp_overlap 3148460 3148469, overlap 3148467 3148466 GAATAAGCCACGATA CCGGATGGC ACTC GCCATCCGG TAATTGTTAGCCTAT ygiD 3149312 - 3148497 - | hypothetical protein ygiE 3149428 - 3150201 + | zinc transporter ZupT TERM 3952 3150248 - 3150205 - T 72 -4.7 -4.59853 | gap 1, opp_overlap 3150216 3150245, overlap 3150208 3150210 3150211 3150213 GGAATTGGTTAAAAA CAAC-ATCAGAAGTTGTCCA GCACA TGGACAACTTCTGCCAGCTT CACGAAAGCCTTATT TERM 3953 3150244 - 3150208 - T 95 -11 -4.40963 | opp_overlap 3150216, overlap 3150205 3150210 3150211 3150213 ATTGGTTAAAAACAA CATCAGAAGTTGTCCA GCACA TGGACAACTTCTGCCA GCTTCACGAAAGCCT TERM 3954 3150242 - 3150210 - T 100 -13.6 -3.80746 | opp_overlap 3150216, overlap 3150208 3150205 3150211 3150213 TGGTTAAAAACAACA TCAGAAGTTGTCCA GCACA TGGACAACTTCTGC CAGCTTCACGAAAGC TERM 3955 3150241 - 3150211 - T 100 -17.1 -2.87725 | opp_overlap 3150216, overlap 3150210 3150208 3150205 3150213 GGTTAAAAACAACAT CAGAAGTTGTCCA GCACA TGGACAACTTCTG CCAGCTTCACGAAAG TERM 3956 3150239 - 3150213 - T 85 -13.9 -2.97636 | opp_overlap 3150216, overlap 3150211 3150210 3150208 3150205 TTAAAAACAACATCA GAAGTTGTCCA GCACA TGGACAACTTC TGCCAGCTTCACGAA TERM 3957 3150216 - 3150236 + T 73 -9.8 -3.31322 | opp_overlap 3150213 3150211 3150210 3150208 3150205 AAAACAACATCAGAA GTTGTCCA GCACA TGGACAAC TTCTGCCAGCTTCAC TERM 3958 3150655 - 3150634 - T 86 -5.1 -5.46706 | opp_overlap 3150634 AGGGCAAAATAAAAA CCGAAGCCA GCTA CAACTTCGG TTTCTTGATTAAGGC ribB 3151343 - 3150690 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 3959 3151058 - 3151086 + g 90 -10.3 -4.41206 | opp_overlap 3151063 CTTCAATGGTCACGG TAAAACCGGTGCC ATA GGCGCTGGTGTTA TTTTCTACCATCATT SFV_3086 3151657 - 3152007 + | hypothetical protein TERM 3960 3152024 - 3152060 + F 78 -6.2 -4.7033 | gap 1, opp_overlap 3152026 CATTTGTCTTTAATG CACTGTAAATTATGA ATTAATCC TC-TAATTTACAGTG TTTTCTATTACATTA SFV_3087 3152263 - 3152628 + | insertion sequence 2 OrfA protein SFV_3088 3152586 - 3153437 + | insertion sequence 2 OrfB protein SFV_3089 3153607 - 3153416 - | putative IS1 encoded protein insB 3153682 - 3154185 + | IS1 ORF2 TERM 3961 3155145 - 3155167 + T 100 -8.4 -5.4251 | opp_overlap 3155144 TTTCAGCTATGAACG TCCCTGGC ACAAAAA GCCGGGGA TTTTTTATATCTGCG TERM 3962 3155346 - 3155327 - T 86 -11.4 -3.71649 | overlap 3155311 GGCTGAAACGGGAAA GCCCCTCC CGAG GAAGGGGC CTTACAGAAGGAAAG TERM 3963 3155521 - 3155543 + T 100 -8.4 -5.4251 | opp_overlap 3155519 3155517 3155521 TTTCATTAACACATA TCCCTGGC CCAAAAA GCCGGGGA TTTTTTATATCTGCG TERM 3964 3155722 - 3155703 - T 86 -11.4 -3.71649 | opp_overlap 3155702 3155703, overlap 3155686 3155696 GGCTGAAACGGGAAA GCCCCTCC CGAG GAAGGGGC CTTATAGAAGGAAAG TERM 3965 3155896 - 3155918 + T 100 -8.4 -5.4251 | opp_overlap 3155896 3155894 3155892 TTTCATTAACACATA TCCCTGGC CCAAAAA GCCGGGGA TTTTTTATATCTGCG TERM 3966 3156097 - 3156078 - T 86 -11.4 -3.71649 | opp_overlap 3156077 3156078, overlap 3156061 3156071 GGCTGAAACGGGAAA GCCCCTCC CGAG GAAGGGGC CTTATAGAAGGAAAG SFV_3092 3157729 - 3156296 - | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase glnE 3160704 - 3157777 - | bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase TERM 3967 3158770 - 3158745 - GR 75 -11.1 -3.06261 | opp_overlap 3158737 3158767 CCGCAATGCGTAACA GCTGCGCCTGT TTGA ACTGACGCAGC GCCTCAAGCTGTTGT TERM 3968 3159792 - 3159775 - GR 70 -4 -4.6951 | ACGACGGAAAACAAA CGGGCG CAGCAT CGCACG CAACTCGTTAGCATA TERM 3969 3160588 - 3160554 - GR 81 -9.3 -4.07687 | gap 1, opp_overlap 3160554 ATTCCTCGGCTAAAA GCTCTGGCAG-CCGCT CAAC AACGGTCTGCCAGTAC TGCTGTAACGGTGAA ygiF 3161842 - 3160640 - | hypothetical protein TERM 3970 3160996 - 3160970 - GH 72 -5 -4.65895 | opp_overlap 3160957, overlap 3160971 TTTGGCATCTAAAAA CGGCTGCCATGC TTT GCTTACCAGCCA TTCGGTCAACGCCAG TERM 3971 3161590 - 3161574 - GH 71 -2.9 -4.82901 | TTTTCGCGATAAAAA TCGGTGC TAA ACAGCGA CTGCACGCGGGAAGC TERM 3972 3162615 - 3162605 - g 83 -5.4 -5.093 | GTTAAAAGAAGAAAA TCAG AAA CTGA AAAACGAGCTGATTG ygiM 3162183 - 3162803 + | putative signal transduction protein TERM 3973 3162973 - 3163000 + G 95 -11.2 -4.47397 | overlap 3162974 CACAGGAGATGCTCG ACGCGGGCTACC AGCA GGTAGGCCGCGA TTTTCCTGTGTTTCT TERM 3974 3162974 - 3162999 + G 95 -14.7 -3.26811 | overlap 3162973 ACAGGAGATGCTCGA CGCGGGCTACC AGCA GGTAGGCCGCG ATTTTCCTGTGTTTC TERM 3975 3163072 - 3163084 + G 90 -9.1 -4.4773 | opp_overlap 3163059 3163066 AACGGAAATCCGGTT CCGGT TAC ACCGG TTTTACTTGCTATGC TERM 3976 3163275 - 3163285 + G 78 -8.2 -4.2679 | overlap 3163274 3163275 CCGTTACGCGTACTG CGCG TGG CGCG TTTTGCTGCGCGTTA TERM 3977 3163458 - 3163479 + G 75 -5.1 -4.63218 | gap 1 TTCTTCCAGGTACTG CGCG-ATTGC GGC GCACTTCGCG TTTTATTCCCGGAAA cca 3162867 - 3164105 + | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase bacA 3165089 - 3164268 - | undecaprenyl pyrophosphate phosphatase folB 3165548 - 3165180 - | bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase ygiP 3167214 - 3166213 - | transcriptional activator TtdR ygiH 3165653 - 3166270 + | putative glycerol-3-phosphate acyltransferase PlsY ttdA 3167421 - 3168233 + | tartrate dehydratase subunit alpha TERM 3978 3168815 - 3168800 - g 93 -4 -5.46706 | gap 1 AGCCGAAAACAAAAA GCTGTTC GCC GAAC-GC CGCGATCCCATCGTG ttdB 3168261 - 3168866 + | L(+)-tartrate dehydratase subunit beta TERM 3979 3168874 - 3168893 + F 89 -9.3 -4.57073 | opp_overlap 3168867 3168868 TCAAATAACCCTCCC GGAGAGG CTCACC CCTCTCC TTTTTCGCAGGCATA TERM 3980 3169079 - 3169115 + G 71 -11 -2.91912 | gap 1, overlap 3169083 CCCGTGCCGGGTGCC GTGGTGGCGATGGTGGG TATC TCCATCATCGCCAT-AC TCTCTCCCTGGCTGC TERM 3981 3169083 - 3169112 + G 90 -15.1 -2.7035 | overlap 3169079 TGCCGGGTGCCGTGG TGGCGATGGTGGG TATC TCCATCATCGCCA TACTCTCTCCCTGGC TERM 3982 3169319 - 3169309 - g 72 -5.4 -4.57073 | opp_overlap 3169316 GATTCTGGTGAAAAA GATG GGG CATC GCACGCTGTTTCTCG ygjE 3168914 - 3170377 + | hypothetical protein ygjD 3171433 - 3170420 - | O-sialoglycoprotein endopeptidase TERM 3983 3170553 - 3170578 + g 84 -3.9 -5.243 | gap 1, overlap 3170551 GTACAAAATTCCGGA CGC-GCGTAGAA CAC TTCGCCGCGGCG TTTTTTCATCATTTC TERM 3984 3170816 - 3170804 - G 72 -5.5 -4.50976 | overlap 3170811 TTTCAGACCAGAAAA GCTGA AAT CCAGC CCCGGACGGTCGGTC TERM 3985 3171352 - 3171367 + g 71 -3.2 -4.78107 | CCTGACTATACAATT GGTTGG CTAA CAAACC TTTTTCATCGTCGTA TERM 3986 3171638 - 3171621 - H 74 -8.4 -3.9281 | ACCATTTTGAAATAA GCTGGC GTTGAT GCCAGC GGCAAACCGAATTAA rpsU 3171671 - 3171886 + | 30S ribosomal protein S21 TERM 3987 3171930 - 3171963 + F 82 -7.6 -4.62475 | overlap 3171934 ACCGAGTTGTAGTTG TAAGGCCGTGC-TTCC GAAA GGAATGCGCGGC-TTA TTTTCGTTTATGAAT TERM 3988 3171934 - 3171960 + F 95 -10.9 -4.40882 | gap 1, overlap 3171930 AGTTGTAGTTGTAAG GCCGTGC-TTCC GAAA GGAATGCGCGGC TTATTTTCGTTTATG TERM 3989 3172447 - 3172432 - g 70 -3.9 -4.60487 | opp_overlap 3172446, overlap 3172446 CAGTATCTGGAAAAA CGCGG ATTAAG CCACG AGGTTATCGCTCGCT TERM 3990 3173329 - 3173296 - g 70 -5.9 -4.20696 | opp_overlap 3173296 3173307, overlap 3173288 CGATTAATGCCAAAA GCGGCAGAGAGCG GCGTTTCT CGCCCTGTTCCGC AGCTAAAACGCACGA dnaG 3171997 - 3173742 + | DNA primase TERM 3991 3174710 - 3174690 - g 73 -9.1 -3.60948 | GAAGAGATCCTGAAA CTGTCTGAA GTA TTCAAACAG TTCCGCCTGGTGCCG rpoD 3173937 - 3175778 + | RNA polymerase sigma factor RpoD TERM 3992 3175901 - 3175926 + F 100 -9.8 -5.61596 | opp_overlap 3175901 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 3993 3175926 - 3175901 - f 72 -9.1 -3.61398 | opp_overlap 3175901 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SFV_3108 3175916 - 3177262 + | IS4 orf TERM 3994 3177273 - 3177244 - T 89 -9.3 -4.59109 | opp_overlap 3177245, overlap 3177246 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACTCCCCCGGTGAC TERM 3995 3177245 - 3177272 + T 81 -12.8 -3.14564 | opp_overlap 3177244 3177246 ACAGCCCCGAAAAAG AGCCAGTCAGTT GCTT AACTGACTGGCA TTACTCCCCCGGTGA TERM 3996 3177271 - 3177246 - T 100 -16.3 -3.90762 | opp_overlap 3177245, overlap 3177244 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTCCCCCGGTG ygjF 3177800 - 3177294 - | G/U mismatch-specific DNA glycosylase TERM 3997 3178033 - 3178012 - H 100 -14.5 -3.91597 | opp_overlap 3178012 ACCAGATATAGCAAA GGCTGACGA GAAA TCGTCAGCC TTTTTCTTTTTATAT TERM 3998 3178012 - 3178033 + H 100 -14.5 -5.71295 | opp_overlap 3178012 ACCAGATATAGCAAA GGCTGACGA GAAA TCGTCAGCC TTTTTCTTTTTATAT TERM 3999 3179199 - 3179242 + G 77 -6.6 -4.49556 | gap 1, overlap 3179209 CATGAACACGGTCAA TGTTG-CGGTGGTCGCCACGG TCG CGGCGGCGGTCGTCGGCAACG TTTCTTTGGTCACGG TERM 4000 3179663 - 3179648 - g 100 -3.3 -5.72622 | opp_overlap 3179655 TGCACAAATAAAAAA GATCA TTGCGG TGATC GACCGCGCCGCTTTT yqjI 3179076 - 3179699 + | hypothetical protein TERM 4001 3179744 - 3179700 - f 74 -10.6 -3.1886 | opp_overlap 3179717, overlap 3179701 ACGCAACTGGATTAA TCGCCGCATCCGCCAGTGGC GCGGT GCAATTGCCGGATGCGACGC TTGACGCGCCTTATC TERM 4002 3179743 - 3179701 - f 83 -14.1 -2.50994 | opp_overlap 3179717, overlap 3179700 CGCAACTGGATTAAT CGCCGCATCCGCCAGTGGC GCGGT GCAATTGCCGGATGCGACG CTTGACGCGCCTTAT TERM 4003 3179788 - 3179819 + F 76 -11.6 -2.64099 | opp_overlap 3179797 3179799, overlap 3179787 CTACACACCCCGCAG GCCTGATAAGATGC GCCA GCATCGCATCAGGC ATTGTGCTCCAACCG TERM 4004 3179868 - 3179897 + F 82 -11.3 -3.57144 | TTAATGCAGCACCGT CACCGCGTCTTCC AGTC GGCTGGCGCGGTG TTTCACCATCGCCGA TERM 4005 3181583 - 3181564 - f 74 -5.8 -4.57073 | gap 1, overlap 3181567 TATCTTGCCCAAAAA TCA-GGCAA TTA TTGCCCTGA AAACGTGCATTTGCG ygjG 3181791 - 3183170 + | putrescine--2-oxoglutarate aminotransferase TERM 4006 3183176 - 3183208 + F 100 -12.8 -4.82901 | opp_overlap 3183178, overlap 3183178 AGAAGCGTAATATCA AATCGGATGGCGAT ACGAC GTCGCCATCCGATC TTTTTATACGACGCG TERM 4007 3183178 - 3183206 + F 100 -15.4 -4.03995 | opp_overlap 3183178, overlap 3183176 AAGCGTAATATCAAA TCGGATGGCGAT ACGAC GTCGCCATCCGA TCTTTTTATACGACG TERM 4008 3183206 - 3183178 - f 100 -14.7 -3.9344 | opp_overlap 3183176 3183178 AAGCGTAATATCAAA TCGGATGGCGA TACGACG TCGCCATCCGA TCTTTTTATACGACG TERM 4009 3183407 - 3183420 + F 70 -2.3 -5.0133 | overlap 3183392 CGGCACCAGGCTGGT CACGG TTTG CAGTG TTTTTTCCCCACATC TERM 4010 3184690 - 3184672 - g 95 -10.2 -4.72272 | opp_overlap 3184685 CTGGTGTATGAAAAA GCCCGCGA TGG TCGCGCGC TGCCGCTGCTAGTCT ebgR 3183763 - 3184746 + | DNA-binding transcriptional repressor EbgR TERM 4011 3184753 - 3184795 + F 84 -7.8 -4.73614 | gap 1, opp_overlap 3184760, overlap 3184754 3184755 ACCCGTTAAATCCCC TTACA-CACTGTCCGGCAA TCATTT TTGCCGGACAGTGCTGCCG TTTATTTTCGTGATC TERM 4012 3184754 - 3184794 + F 70 -9.1 -3.43084 | gap 1, opp_overlap 3184760, overlap 3184753 3184755 CCCGTTAAATCCCCT TACA-CACTGTCCGGCAA TCATTT TTGCCGGACAGTGCTGCC GTTTATTTTCGTGAT TERM 4013 3184755 - 3184793 + F 78 -12.6 -2.64766 | gap 1, opp_overlap 3184760, overlap 3184754 3184753 CCGTTAAATCCCCTT ACA-CACTGTCCGGCAA TCATTT TTGCCGGACAGTGCTGC CGTTTATTTTCGTGA TERM 4014 3184787 - 3184760 - f 93 -15.7 -2.8806 | opp_overlap 3184755 3184754 3184753 AAATCCCCTTACACA CTGTCCGGCAA TCATTT TTGCCGGACAG TGCTGCCGTTTATTT TERM 4015 3185070 - 3185082 + G 91 -7.7 -5.03314 | GCCCTTAAGCAGTCA GTGGA ATT TCCAC TTTTTTGACCATCCG TERM 4016 3185753 - 3185740 - g 75 -4.5 -4.74103 | opp_overlap 3185740 TTGGCAATTGAAAAA CTGAC CAGC GCCAG CTTTGCTTTTACTGT TERM 4017 3186887 - 3186865 - g 72 -7.6 -3.8647 | ACGCAGCAGATTAAA CTGCGCGACG TTG CGCCGAACAG CGAAGCCCCCTTGCA ebgA 3184930 - 3188016 + | cryptic beta-D-galactosidase subunit alpha TERM 4018 3188431 - 3188443 + G 72 -7.7 -3.96216 | opp_overlap 3188431 3188428 3188427 TGGTTCTCAAAGTCA CCATC GAA GATGG TTATTTCCATAACAA ebgC 3188013 - 3188462 + | cryptic beta-D-galactosidase subunit beta TERM 4019 3188499 - 3188463 - f 76 -8 -4.27512 | overlap 3188466 3188469 TTCCATAACAAATAA CAACTACGGCGGCAAA AGGAG TTTGCCGCCACCGCTA CCCTACACATTTTCG TERM 4020 3188496 - 3188466 - f 87 -9.7 -4.24183 | overlap 3188463 3188469 CATAACAAATAACAA CTACGGCGGCAAA AGGAG TTTGCCGCCACCG CTACCCTACACATTT TERM 4021 3188493 - 3188469 - f 80 -12.2 -3.09866 | overlap 3188466 3188463 AACAAATAACAACTA CGGCGGCAAA AGGAG TTTGCCGCCA CCGCTACCCTACACA TERM 4022 3188771 - 3188757 - g 72 -5.6 -4.56775 | ACGCGTGGGTAAAAA GTTCGC TGG GCGGAC GTTGGGCATTTATTA TERM 4023 3189526 - 3189514 - g 70 -4.7 -4.45664 | CGAACTTAACGAAAA CGGCG TTC CGGCG CGCGCAGCATGGATC ygjI 3188525 - 3189958 + | putative oxidoreductase TERM 4024 3189983 - 3190019 + F 76 -8.3 -4.04922 | opp_overlap 3189978, overlap 3189985 TAAAAAATGAGCAGG C-ATTTTCCCTCTTCCT GGATG AGGA-GAGGGAAAATAG TTTCTGCCTTTATAT TERM 4025 3189985 - 3190016 + F 75 -11.1 -3.05274 | gap 1, opp_overlap 3189978, overlap 3189983 AAAAATGAGCAGGCA TTTTCCCTCTTCCT GGATG AGGA-GAGGGAAAA TAGTTTCTGCCTTTA TERM 4026 3191771 - 3191748 - f 76 -8.2 -4.15833 | gap 1 ACTATCAGCGCAAAA TCAGCGCCACC CGT GATGGC-CTGA AAGTCACCTTTGGCA ygjL 3193757 - 3195775 + | putative NADPH dehydrogenase TERM 4027 3195784 - 3195818 + T 70 -10.6 -2.50816 | overlap 3195783 GATTTAAATCGTTAT TTGAAGCGCCGGATGC AAC GCATCCGGCACGTCGC GTTAATCAATAAACA ygjM 3196236 - 3195820 - | hypothetical protein ygjN 3196547 - 3196233 - | hypothetical protein TERM 4028 3196584 - 3196614 + rH 71 -6.8 -4.17296 | opp_overlap 3196586, overlap 3196585 3196588 AATTGGCAATATGAT AACATCCGTTGACA GAT TGGCAACGGATGAA TTTATCTGTGTGACG TERM 4029 3196585 - 3196613 + rH 73 -10.3 -3.09896 | opp_overlap 3196586, overlap 3196584 3196588 ATTGGCAATATGATA ACATCCGTTGACA GAT TGGCAACGGATGA ATTTATCTGTGTGAC TERM 4030 3196612 - 3196586 - RH 93 -13.8 -3.52073 | opp_overlap 3196585 3196584 3196588 TTGGCAATATGATAA CATCCGTTGACA GAT TGGCAACGGATG AATTTATCTGTGTGA TERM 4031 3196588 - 3196610 + rH 71 -10.6 -2.75389 | opp_overlap 3196586, overlap 3196585 3196584 GGCAATATGATAACA TCCGTTGACA GAT TGGCAACGGA TGAATTTATCTGTGT TERM 4032 3196750 - 3196799 + rH 75 -10 -3.53811 | opp_overlap 3196728 3196726 3196786 3196796, overlap 3196739 ATGCGACGCTTGCCG CGTCTTATCCGGCCTGGGGGTA ACGTGC TGAACGTAGGCCGGATAAGGCG TTTACGCCGCATCCG TERM 4033 3196817 - 3196786 - RH 78 -12.2 -2.52795 | opp_overlap 3196750, overlap 3196796 AACGTGCTGAACGTA GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA GGTAACTCCCAATCT ygjO 3198277 - 3196832 - | putative enzyme TERM 4034 3197481 - 3197497 + gH 78 -6.5 -4.58283 | CATGCCAGCGTGGTG GTGGTCG GGC CGAGCAC TTTTTCGAACAGTTC SFV_3125 3198257 - 3198556 + | hypothetical protein ygjQ 3198633 - 3199325 + | hypothetical protein TERM 4035 3200175 - 3200157 - g 70 -3.8 -4.65895 | opp_overlap 3200157 3200169 CTGGTGATTGAAAAA CTGTCTGA ATG CCAGAAAG TCTGCTTTGTGCCGC ygjR 3199404 - 3200402 + | hypothetical protein TERM 4036 3200548 - 3200567 + F 100 -10.8 -5.56673 | opp_overlap 3200548 CCGGGCAACCCGAAA GGAATACG CAGA CGTATTCC TTTTTTGTTGTAAGT TERM 4037 3200567 - 3200548 - f 83 -10.8 -3.66178 | opp_overlap 3200548 CCGGGCAACCCGAAA GGAATACG CAGA CGTATTCC TTTTTTGTTGTAAGT TERM 4038 3200623 - 3200648 + F 100 -13.3 -5.76633 | opp_overlap 3200623 3200622 3200620 ATGCATAAAAAGCAG CGGCTGACGTC TTCC GACGTTGGCCG TTTTTTTATGTGTAA ygjT 3200673 - 3201638 + | putative transport protein TERM 4039 3202081 - 3202064 - f 75 -6.3 -4.44046 | TTTATGTTAAATAAA TGCAACC ATTA AGTTGCA AAACATGACCGCTCT ygjU 3202234 - 3203478 + | serine/threonine transporter SstT TERM 4040 3203487 - 3203511 + T 100 -12.1 -4.6468 | TAATTAATTGTTTAA CCCCTTTCGTC TAT GGCGGGAGGGG TTTTCTCTACTTTAA ygjV 3204034 - 3203483 - | hypothetical protein TERM 4041 3204066 - 3204090 + r 100 -10 -5.4505 | opp_overlap 3204066 GTATGGAAAAGCAAA CGGCGCTTCA CATTA TGAAACGCCG TTTTTTATTAACAAC TERM 4042 3204090 - 3204066 - R 95 -12.9 -4.21922 | opp_overlap 3204066 GTATGGAAAAGCAAA CGGCGCTTCAC ATT ATGAAACGCCG TTTTTTATTAACAAC uxaA 3205604 - 3204117 - | altronate hydrolase TERM 4043 3204293 - 3204319 + g 77 -8.7 -4.11216 | TCCAGTGTTTTTTCT TCGCCGCCAGT TCACT GTTGGTGGCGA TTTTCACCGTCGGCA TERM 4044 3205277 - 3205325 + g 77 -11.8 -3.15861 | gap 1, opp_overlap 3205277 TAGCGCGACGATAGA TCTGCACTTCAGGATCTGCC-GC TTGC GCAGGCAGATCCTGAAAATCAGG TTGATAGCGATACTG TERM 4045 3205325 - 3205277 - G 75 -11.8 -2.94416 | gap 1, opp_overlap 3205277 TAGCGCGACGATAGA TCTGCACTTCAGGATCTGCC-GC TTGC GCAGGCAGATCCTGAAAATCAGG TTGATAGCGATACTG uxaC 3207031 - 3205619 - | glucuronate isomerase TERM 4046 3205838 - 3205817 - G 72 -7.9 -3.95787 | opp_overlap 3205818 3205830, overlap 3205830 CAGCATACCGACAAA GCGGCTCAG CAGA CCGAGCTGC GCCAGTTGGGTCATC TERM 4047 3208373 - 3208393 + G 72 -8.9 -3.83502 | overlap 3208359 3208377 CTCGGTGGTTACCTG CCGCCGCTG TTC CAGCGTTGG TTTGGTGTGAACCTG TERM 4048 3208377 - 3208389 + G 73 -9.1 -3.59402 | overlap 3208359 3208373 GTGGTTACCTGCCGC CGCTG TTC CAGCG TTGGTTTGGTGTGAA exuT 3207347 - 3208813 + | transport protein of hexuronates TERM 4049 3208864 - 3208833 - T 100 -24.6 -3.43564 | opp_overlap 3208833, overlap 3208814 TAACGTAAGTTATAA CGACGAAGCCGCCT TATC AGGCGGCTTCGTCG TTTATATAGAAAAAA TERM 4050 3208833 - 3208864 + T 100 -24.6 -4.03234 | opp_overlap 3208814 3208833 TAACGTAAGTTATAA CGACGAAGCCGCCT TATC AGGCGGCTTCGTCG TTTATATAGAAAAAA SFV_3135 3209989 - 3208901 - | hypothetical protein tsaC 3212835 - 3209986 - | outer membrane fimbrial user protein insB 3212949 - 3213452 + | IS1 ORF2 exuR 3213560 - 3214336 + | DNA-binding transcriptional repressor ExuR TERM 4051 3214350 - 3214369 + F 87 -10.7 -4.0942 | opp_overlap 3214340 GAAATTCCTGTCCGA CAGGCGC TGCAAT GCGCCTG TTTGTCTCGTCGGTA TERM 4052 3214627 - 3214611 - f 70 -5.1 -4.44819 | opp_overlap 3214623, overlap 3214613 CAGAACATACCAAAA CAGCAAT AAC ATTGCGG TAGTGCATCTTTTAA yqjA 3214681 - 3215343 + | hypothetical protein yqjB 3215347 - 3215730 + | hypothetical protein TERM 4053 3215793 - 3215820 + F 79 -10.6 -3.48924 | opp_overlap 3215793 3215794 3215796, overlap 3215794 3215797 ACTGTCTATGATTAA TGAGGCGGTGGT TAAC ACTACCGCTTCG TTGTCTGGACAATCG TERM 4054 3215794 - 3215819 + F 76 -11.9 -2.6914 | opp_overlap 3215793 3215794 3215796, overlap 3215793 3215797 CTGTCTATGATTAAT GAGGCGGTGGT TAAC ACTACCGCTTC GTTGTCTGGACAATC TERM 4055 3215797 - 3215816 + F 75 -10 -3.49618 | opp_overlap 3215796 3215794 3215793, overlap 3215794 3215793 TCTATGATTAATGAG GCGGTGGT TAAC ACTACCGC TTCGTTGTCTGGACA yqjC 3215877 - 3216311 + | hypothetical protein yqjD 3216269 - 3216574 + | hypothetical protein yqjE 3216577 - 3216981 + | hypothetical protein TERM 4056 3217021 - 3217043 + G 71 -9.2 -3.54741 | opp_overlap 3217031 3217034 3217035 GCAACTGCTTAGCCA GATCCAGC AACAACG GCTGGATC TTTCCGCCAGTCGTC SFV_3144 3216971 - 3217270 + | hypothetical protein TERM 4057 3217280 - 3217298 + F 85 -12.4 -3.37071 | GGTTAACTTCCCTCT GGCCGGAG CAA TTCCGGCC TTATCCCTCAAATTT TERM 4058 3217438 - 3217421 - g 100 -4.1 -5.60993 | overlap 3217424 3217427 CCTTGCACAAAAAAA CAATCAG CAGC CTGAGTG GCGCAGTGGAGAGTA TERM 4059 3217435 - 3217424 - g 79 -4.4 -4.89054 | overlap 3217421 3217427 TGCACAAAAAAACAA TCAG CAGC CTGA GTGGCGCAGTGGAGA TERM 4060 3217595 - 3217608 + G 87 -4.5 -5.27335 | GTGTCCCGGGTTTTA TGCTG CTGA CGGCA TTTTTATTTCACAGC yqjF 3217366 - 3217752 + | hypothetical protein TERM 4061 3217797 - 3217780 - f 100 -11.3 -5.37345 | opp_overlap 3217780 CTTAACGATAAAAAA CGAGGAG GAAG CTCCTCG TTTTTGCTATTGGAG TERM 4062 3217780 - 3217797 + F 100 -11.3 -4.87626 | opp_overlap 3217780 CTTAACGATAAAAAA CGAGGAG GAAG CTCCTCG TTTTTGCTATTGGAG yqjG 3217822 - 3218808 + | putative transferase TERM 4063 3218831 - 3218814 - f 100 -11.3 -5.40072 | opp_overlap 3218814 CTTCGGTTAAAAAAA GGCACCT TACG AGGTGCC TCTGATAATTAGCTA TERM 4064 3218814 - 3218831 + F 74 -11.3 -2.8664 | opp_overlap 3218814 CTTCGGTTAAAAAAA GGCACCT TACG AGGTGCC TCTGATAATTAGCTA yhaH 3219080 - 3219469 + | putative cytochrome TERM 4065 3219494 - 3219477 - T 73 -9.9 -3.34845 | opp_overlap 3219473 3219472 3219480 AAGAATAATGATTAA GCACCTT GTAA AAGGTGC TTCAAATTGTTGACA TERM 4066 3219667 - 3219650 - T 73 -9.9 -3.37796 | opp_overlap 3219650 TGTCAGCAGTCAGAA GCACCTT GTGA AAGGTGC TTAATAGATTATTTT TERM 4067 3219650 - 3219667 + T 71 -9.9 -3.26842 | opp_overlap 3219650 TGTCAGCAGTCAGAA GCACCTT GTGA AAGGTGC TTAATAGATTATTTT yhaJ 3220572 - 3219676 - | LysR family transcriptional regulator yhaK 3220677 - 3221378 + | hypothetical protein yhaL 3221401 - 3221565 + | hypothetical protein TERM 4068 3221684 - 3221638 - T 72 -8.7 -3.69681 | gap 1, overlap 3221636 3221639 TCAACAAATTAAACA CCCCGTAGGCCGGATAAGATGC GCCA GCATCGCATCCGGCAT-CAGGT ACAAAACACAACAAC TERM 4069 3221683 - 3221639 - T 79 -12.2 -2.80724 | gap 1, overlap 3221638 3221636 CAACAAATTAAACAC CCCGTAGGCCGGATAAGATGC GCCA GCATCGCATCCGGCAT-CAGG TACAAAACACAACAA yhaNM 3223087 - 3221777 - | hypothetical protein TERM 4070 3222493 - 3222482 - G 75 -7.2 -4.35604 | GGAATCGAGAATAAA GCGG ATCG CCGC AAATGGGACTTCATT yhaO 3224383 - 3223115 - | putative transport system permease protein TERM 4071 3224696 - 3224679 - R 100 -11.3 -6.00086 | AGATCACAAAAAAAA GGTGCAC ATTT GTGCACC CAAGGATGAAAGCTG TERM 4072 3224725 - 3224708 - R 80 -9.9 -3.84961 | overlap 3224720 CACCCAAGGATGAAA GCTGACA GCAA TGTCAGC CGCAGACCACTTTAA yhaP 3226085 - 3224721 - | putative L-serine deaminase TERM 4073 3226150 - 3226116 - R 75 -11.5 -3.05384 | gap 1, opp_overlap 3226129 3226130, overlap 3226130 TTGCCGTTCAGTGAA GTGGAGCGGAACGACC TTGC GACCGTCCCGCTC-AC GAGGCTTTACGCACT yhaR 3226609 - 3226157 - | hypothetical protein tdcE 3228854 - 3226560 - | formate acetyltransferase 3 TERM 4074 3227050 - 3227072 + gr 70 -5.5 -4.33854 | GACTGGGTAGGGACG GCGTTGCGA TAGGT TGGCAGCGC TTTAATTTTCTTCAT TERM 4075 3227445 - 3227455 + gr 71 -6.8 -4.07687 | overlap 3227442 CAGCACGTCGTCCAT CAGC GGT GCTG TTTTCGGCCCGACCT TERM 4076 3228450 - 3228481 + gr 83 -8.8 -4.35461 | gap 1 ATATTCAAATTCACT GTCCATTTCACGGCC ATA GGC-GTGGAATGAAC TTTTAATCATATTAA tdcD 3230108 - 3228888 - | propionate/acetate kinase TERM 4077 3229922 - 3229953 + g 73 -9.4 -3.57263 | gap 1, overlap 3229922 ATGCACCTTCGTAGC T-GTGGTGAGCCAGC GGT GCTGGCTCTCCCCCA TTTACGGATAAGAAT TERM 4078 3229922 - 3229952 + g 70 -11 -2.74144 | overlap 3229922 ATGCACCTTCGTAGC TGTGGTGAGCCAGC GGT GCTGGCTCTCCCCC ATTTACGGATAAGAA tdcC 3231453 - 3230122 - | threonine/serine transporter TdcC tdcB 3232464 - 3231475 - | threonine dehydratase TERM 4079 3231527 - 3231548 + g 79 -2.1 -5.28983 | GAAAGATCGATATTG CCGCCGGAA ATAA TACTGACGG TTTTTCTGTTTTGAA tdcA 3233501 - 3232563 - | DNA-binding transcriptional activator TdcA tdcR 3233691 - 3234035 + | DNA-binding transcriptional activator TdcR yhaB 3234291 - 3234830 + | hypothetical protein TERM 4080 3234806 - 3234820 + F 75 -2.9 -5.23396 | CTTTTTTTCACCCGA TCATT TTAAT AATGA TTTTTATTGATTATT yhaC 3234852 - 3235568 + | hypothetical protein TERM 4081 3236170 - 3236144 - f 72 -5 -4.66833 | overlap 3236145 TGGCAACCGCAAAAA TGCCTGATGCGC TAC GCTTATCAGGCC TACGCCATCTCTGCA TERM 4082 3236405 - 3236378 - f 100 -15 -4.07568 | opp_overlap 3236385, overlap 3236385 TCTGCCCCTCCAAAA GCAAAAACCCGC CGAA GCGGGTTTTTAC GTATATCAGGTGAAA TERM 4083 3236398 - 3236385 - f 100 -9.5 -5.0925 | opp_overlap 3236385, overlap 3236378 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTATATCA TERM 4084 3236385 - 3236398 + F 93 -9.5 -4.72846 | opp_overlap 3236385 3236378 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTATATCA TERM 4085 3236518 - 3236491 - f 100 -15 -4.07568 | opp_overlap 3236498, overlap 3236498 TCTGCCCCTCCAAAA GCAAAAACCCGC CGAA GCGGGTTTTTAC GTACATCAGGTGAAA TERM 4086 3236511 - 3236498 - f 100 -9.5 -5.0925 | opp_overlap 3236498, overlap 3236491 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTACATCA TERM 4087 3236498 - 3236511 + F 93 -9.5 -4.67353 | opp_overlap 3236498 3236491 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTACATCA TERM 4088 3236631 - 3236604 - f 100 -15 -4.07568 | opp_overlap 3236611, overlap 3236611 TCTGCCCCTCCAAAA GCAAAAACCCGC CGAA GCGGGTTTTTAC GTAAAACAGGTGAAA TERM 4089 3236624 - 3236611 - f 100 -9.5 -5.0925 | opp_overlap 3236611, overlap 3236604 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTAAAACA TERM 4090 3236611 - 3236624 + F 93 -9.5 -4.65895 | opp_overlap 3236604 3236611 CTCCAAAAGCAAAAA CCCGC CGAA GCGGG TTTTTACGTAAAACA SFV_3163 3236641 - 3237030 + | hypothetical protein yhaD 3238275 - 3237049 - | glycerate kinase I TERM 4091 3238217 - 3238228 + g 75 -7.2 -4.34263 | opp_overlap 3238217 CCTGTTACCACATGA CGCC GGAG GGCG TTTCTCTTATTCGGC garR 3239175 - 3238291 - | tartronate semialdehyde reductase TERM 4092 3238851 - 3238865 + g 77 -10 -3.57561 | overlap 3238845 CAATGCCTTTCGCTT TCAGCG CTT CGCTGA TTTCACGGCTTGCCA TERM 4093 3239108 - 3239122 + g 73 -4.2 -4.81685 | opp_overlap 3239108 ACCACCAGCGAGTAA CCTGCT TTC AGAAGG TTTTTACTCATTGGT yhaF 3239756 - 3239211 - | hypothetical protein yhaU 3241283 - 3239997 - | putative transport protein TERM 4094 3240631 - 3240645 + g 86 -7 -4.9218 | TTGGGACCGCTTGCT GCCGCG CTG CCCGGC TTTTTGTGGTCCATA insB 3241788 - 3241285 - | IS1 ORF2 SFV_3169 3241863 - 3242042 + | putative IS1 encoded protein TERM 4095 3242546 - 3242575 + F 100 -13.7 -4.50241 | overlap 3242547 ACCGTTAATACGTTA CGGCGTTATCTGA CCTT TCAGATAACGCCC TTTTCCTTCCTCTTT TERM 4096 3242547 - 3242574 + F 100 -17.2 -3.28518 | overlap 3242546 CCGTTAATACGTTAC GGCGTTATCTGA CCTT TCAGATAACGCC CTTTTCCTTCCTCTT TERM 4097 3242778 - 3242765 - g 72 -5.9 -4.41348 | opp_overlap 3242765 CCTGTCGCAAACAAA GGCGC AGAA ACGCC TTATTTACTGCAATC yraI 3242618 - 3243313 + | putative chaperone TERM 4098 3244471 - 3244447 - T 70 -9.2 -3.42605 | overlap 3244445 3244443 GGCATCTAAAATATA GCGCGACCGC TGGAC GCTATCGCGC TGATGCAAACAGTGA SFV_3173 3245917 - 3245078 - | IS2 ORF2 SFV_3174 3246306 - 3245941 - | insertion sequence 2 OrfA protein TERM 4099 3247629 - 3247608 - g 77 -3 -5.07275 | TCACACAGATAAAAA GCAGCA CCGTATATTC TGCTGC AACCCAAACGGGTGT TERM 4100 3248080 - 3248068 - g 71 -9.1 -3.46117 | overlap 3248059 AGTAGACCAGTACAA CCTGG TCG CCAGG CGAAGAAGTTCAGAC yraK 3247205 - 3248296 + | putative fimbrial protein TERM 4101 3248331 - 3248299 - T 89 -11.5 -4.07885 | gap 1, overlap 3248302 CATGGTGCGGTAAAA GAAGACGTTGCGTT TTGATT AACGCAACG-CTTC GGCACTGTTACCCCT TERM 4102 3248328 - 3248302 - T 73 -7.4 -4.17048 | gap 1, overlap 3248299 GGTGCGGTAAAAGAA GACGTTGCGTT TTGATT AACGCAACG-C TTCGGCACTGTTACC yraL 3249199 - 3248339 - | hypothetical protein TERM 4103 3248400 - 3248416 + g 83 -6.5 -5.00616 | overlap 3248398 3248410 ACGCCATGAATTTCT GCGGC CAGCGCC GCCGC TTTTTTCAGCGGCAG TERM 4104 3249259 - 3249248 - gH 100 -3 -5.75945 | ATTGCGTAAAAAAAA TATC ACTG GATA CATTATGGTACCCTC TERM 4105 3249395 - 3249407 + GH 72 -4.7 -4.66537 | overlap 3249388 3249392 GCAGGGCACGGCGCA GGCTG ATT CTGCC TTTTATCTTCAGCAG TERM 4106 3249680 - 3249662 - gH 78 -5.3 -4.79352 | opp_overlap 3249669 3249672, overlap 3249642 3249640 3249638 3249637 CGATTTAGAACAAAA CCAGCAA GCGCG TTACTGG CAGGCAAAAATCGAT yraM 3249234 - 3251300 + | putative glycosylase yraN 3251258 - 3251653 + | hypothetical protein yraO 3251673 - 3252263 + | DnaA initiator-associating protein DiaA yraP 3252273 - 3252848 + | hypothetical protein TERM 4107 3252914 - 3252949 + T 76 -8.2 -4.1899 | opp_overlap 3252926, overlap 3252883 3252916 3252917 CAACGATGCAAACCG TAGGTCGGATAAGGCG TTTA CGCCGCATCCGACATG TTTTCCCTCAAATCA TERM 4108 3252916 - 3252947 + T 72 -8.6 -3.69483 | opp_overlap 3252926, overlap 3252883 3252914 3252917 ACGATGCAAACCGTA GGTCGGATAAGGCG TTTA CGCCGCATCCGACA TGTTTTCCCTCAAAT TERM 4109 3252917 - 3252946 + T 77 -12.1 -2.81208 | opp_overlap 3252926, overlap 3252883 3252916 3252914 CGATGCAAACCGTAG GTCGGATAAGGCG TTTA CGCCGCATCCGAC ATGTTTTCCCTCAAA yraQ 3254002 - 3252962 - | hypothetical protein yraR 3254710 - 3254075 - | hypothetical protein yhbO 3254838 - 3255356 + | hypothetical protein yhbP 3255779 - 3255336 - | hypothetical protein TERM 4110 3255617 - 3255627 + g 74 -8.2 -3.87914 | overlap 3255618 GCGGCCCACTCATCT GCGC GTG GCGC GTTTTTTCTTCCGTC TERM 4111 3255618 - 3255628 + g 100 -8.2 -5.4833 | overlap 3255617 CGGCCCACTCATCTG CGCG TGG CGCG TTTTTTCTTCCGTCA yhbQ 3255821 - 3256132 + | GIY-YIG nuclease superfamily protein yhbS 3256622 - 3256119 - | hypothetical protein yhbT 3257140 - 3256616 - | hypothetical protein TERM 4112 3257755 - 3257777 + G 71 -9 -3.43676 | overlap 3257757 GCCATTTTGACGTTG CCCGCGTGGT GCT GCCGCGCGTG TTGTCGATTCATCAG TERM 4113 3257757 - 3257775 + G 72 -10.2 -3.28814 | overlap 3257755 CATTTTGACGTTGCC CGCGTGGT GCT GCCGCGCG TGTTGTCGATTCATC yhbU 3257349 - 3258344 + | putative collagenase yhbV 3258353 - 3259198 + | hypothetical protein yhbW 3259312 - 3260319 + | hypothetical protein mtr 3261681 - 3260437 - | tryptophan permease TERM 4114 3260787 - 3260771 - G 70 -4.3 -4.48902 | AGATAGTCAAACAAA CCCAGCG TTA CGCCAAG GAACGAACTCGCTAC TERM 4115 3261221 - 3261240 + g 76 -9.3 -3.78775 | opp_overlap 3261219 3261220 GCCCCCAGCACAATC GCCGTCA TGCGGC TGACGGC TTTAGTACTCAACCA TERM 4116 3261307 - 3261290 - G 70 -4 -4.67641 | opp_overlap 3261295 AGTGCAAAACCAAAA CCCGCC GCCCGT GCCGGG ACGTTTAGCGACATC TERM 4117 3261578 - 3261562 - G 74 -2.9 -4.9218 | overlap 3261563 CATTGACCAGAAAAA CCACGCC CCG GACATGA CCACTGGCAGAGAAA TERM 4118 3261654 - 3261627 - G 76 -10.6 -3.28712 | gap 1, opp_overlap 3261626 3261646 TGGTGCCGCCGATAA TCACCA-CGCCGC CAA GCAGCGACGGTGA CGTTTGGGTGGTGGT TERM 4119 3261769 - 3261791 + r 74 -10.6 -3.17888 | opp_overlap 3261769, overlap 3261767 3261765 3261763 AAAGACAGAAAAAAA GCCCCGAT GGTTAAA ATCGGGGC TGTATATATTATTTT TERM 4120 3261791 - 3261769 - R 100 -10.6 -5.82281 | opp_overlap 3261769 3261767 3261765 3261763 AAAGACAGAAAAAAA GCCCCGAT GGTTAAA ATCGGGGC TGTATATATTATTTT deaD 3263790 - 3261835 - | ATP-dependent RNA helicase DeaD TERM 4121 3263869 - 3263844 - R 73 -7.5 -4.04023 | overlap 3263845 ATTAACGAACAACAA CGCCCTCACCC GTTA AGGTGATGGCA ATCAAAAAAGATTAC yhbM 3264788 - 3263904 - | lipoprotein NlpI TERM 4122 3264885 - 3264864 - R 100 -15.1 -4.07568 | CCTGCCCGGTTAAAA GCCCCCCGC CGCA GCGGAGGGC AAATGGCAACCTTAC pnp 3267032 - 3264897 - | polynucleotide phosphorylase/polyadenylase TERM 4123 3267240 - 3267258 + r 77 -7.3 -4.38712 | opp_overlap 3267241, overlap 3267241 CGTCAGCTTGAAAAA AGGGGCC ACTCA GGCCCCC TTTTCTGAAACTCGC TERM 4124 3267257 - 3267241 - R 100 -10.8 -5.03314 | opp_overlap 3267240 3267241 GTCAGCTTGAAAAAA GGGGCC ACTCA GGCCCC CTTTTCTGAAACTCG TERM 4125 3267241 - 3267257 + r 74 -10.8 -3.22906 | opp_overlap 3267241, overlap 3267240 GTCAGCTTGAAAAAA GGGGCC ACTCA GGCCCC CTTTTCTGAAACTCG rpsO 3267548 - 3267279 - | 30S ribosomal protein S15 TERM 4126 3267383 - 3267404 + g 85 -2.9 -5.34555 | opp_overlap 3267385, overlap 3267385 3267386 AAACCATGCGCAGCA GACCACGAC GGCT GTGGTGATC TTTTTTGTGCTCTGC truB 3268641 - 3267697 - | tRNA pseudouridine synthase B rbfA 3269042 - 3268641 - | ribosome-binding factor A TERM 4127 3268980 - 3268991 + g 75 -4.4 -4.82855 | overlap 3268972 TTCACGCTGCAGGAT GAGA GCGA TCTC TTTTTGCATTTCCTG TERM 4128 3269065 - 3269079 + r 95 -11.4 -4.68506 | opp_overlap 3269065 TCTCCTGACAAAAAA GGGGCT GTT AGCCCC TTTTTAAAATTAATT TERM 4129 3269079 - 3269065 - R 100 -11.4 -5.24129 | opp_overlap 3269065 TCTCCTGACAAAAAA GGGGCT GTT AGCCCC TTTTTAAAATTAATT TERM 4130 3269193 - 3269154 - R 93 -15 -3.11634 | opp_overlap 3269132 3269168, overlap 3269132 3269131 CGTCACATCAGGCAA TCCATGCCGGATGCGGCG TAAA CGCCTTATCCCGCATGGA ACCCTAAAAACCTTA infB 3271854 - 3269206 - | translation initiation factor IF-2 nusA 3273366 - 3271879 - | transcription elongation factor NusA TERM 4131 3272020 - 3272010 - G 74 -8.2 -3.89346 | opp_overlap 3272015, overlap 3272011 CTTCCAGCGTACAAA CGCC ACG GGCG GCCAGTTTGAATGCC TERM 4132 3272113 - 3272131 + g 82 -7.4 -4.57569 | TTCTTCCTGGGCCTG TGCAATGG TGG CCAGTGCA TTTTTAGCACGCTCG yhbC 3273846 - 3273394 - | hypothetical protein TERM 4133 3273883 - 3273871 - H 93 -6.9 -5.80248 | opp_overlap 3273870 CAAGACATAAAAAAA GGGCC TAA AGCCC AGTTATTCTGTAGTC TERM 4134 3273911 - 3273928 + H 71 -6.9 -4.0641 | opp_overlap 3273912, overlap 3273912 GTCAGATAACAAAAA ACCCCGA TAAA TCGGGGC TTTATATAACTGAAC TERM 4135 3273927 - 3273912 - H 100 -10.4 -5.60689 | opp_overlap 3273911 3273912 TCAGATAACAAAAAA CCCCGA TAAA TCGGGG CTTTATATAACTGAA TERM 4136 3273912 - 3273927 + H 73 -10.4 -3.03525 | opp_overlap 3273912, overlap 3273911 TCAGATAACAAAAAA CCCCGA TAAA TCGGGG CTTTATATAACTGAA argG 3274477 - 3275820 + | argininosuccinate synthase TERM 4137 3277906 - 3277875 - T 100 -14.6 -4.32436 | opp_overlap 3277881, overlap 3277876 3277881 AGACCAGGACCAAAA CGAAAAGAGACGCT TTTC AGCGTCTCTTTTCT GGAATTTGGTACCGA TERM 4138 3277905 - 3277876 - T 100 -18.1 -3.18738 | opp_overlap 3277881, overlap 3277875 3277881 GACCAGGACCAAAAC GAAAAGAGACGCT TTTC AGCGTCTCTTTTC TGGAATTTGGTACCG TERM 4139 3277881 - 3277900 + T 100 -12.2 -4.44974 | opp_overlap 3277881 3277876 3277875 GGACCAAAACGAAAA GAGACGCT TTTC AGCGTCTC TTTTCTGGAATTTGG TERM 4140 3277900 - 3277881 - T 100 -12.2 -4.70319 | opp_overlap 3277881, overlap 3277876 3277875 GGACCAAAACGAAAA GAGACGCT TTTC AGCGTCTC TTTTCTGGAATTTGG TERM 4141 3278038 - 3278060 + T 76 -7.7 -4.32607 | GATATCGCTGGTCGG CTTAGCCGG AGCAG CTGGCTGAG TTTGTTCGGTTTTCG secG 3278346 - 3278014 - | preprotein translocase subunit SecG TERM 4142 3278546 - 3278534 - R 77 -3.3 -5.24129 | opp_overlap 3278535, overlap 3278535 3278536 TTCGCCGAGAAAAAA TGCGA CAA TCGCC GCCTTTTTAGCCAGT glmM 3279910 - 3278573 - | phosphoglucosamine mutase folP 3280751 - 3279903 - | dihydropteroate synthase TERM 4143 3280357 - 3280346 - G 70 -7.2 -4.0942 | opp_overlap 3280346 TATGCATCAGACAAA CCGG TAAA CCGG TTTCTGCAGCCGCCT TERM 4144 3280786 - 3280805 + r 87 -10.6 -4.18494 | opp_overlap 3280786 ATTGATAAGAAAAAA CCCCGGAG CACG CCCCGGGG TTTTCGGTACAAATA TERM 4145 3280805 - 3280786 - R 100 -12.8 -5.56673 | opp_overlap 3280786 ATTGATAAGAAAAAA CCCCGGAG CACG CCCCGGGG TTTTCGGTACAAATA hflB 3282775 - 3280841 - | ATP-dependent metalloprotease TERM 4146 3281848 - 3281827 - G 74 -10.1 -3.42574 | overlap 3281841 GCAAGCCGACCACAA CCTGGCGGT CGAA ACGGCCAGG ACGCAGCAGGGCCGG rrmJ 3283504 - 3282875 - | 23S rRNA methyltransferase J TERM 4147 3283405 - 3283418 + g 76 -3.8 -4.99638 | opp_overlap 3283397 GTTTAAACCAGGCAC GGGA ACGTAA TCCC TTTTTCTGTGCCTGT TERM 4148 3283671 - 3283654 - g 90 -4.9 -5.34309 | gap 1, overlap 3283659 AGTACTAAACAAAAA CAGCACCT GAA AGGT-CTG GCACATCCGCTCAAG yhbY 3283630 - 3283923 + | RNA-binding protein YhbY TERM 4149 3284009 - 3284036 + T 86 -13.6 -3.25946 | gap 1, opp_overlap 3284016, overlap 3284016 CACGCTCTGTTCGTT GATAAAAGGCCGC AGA GCGGCCTTTT-TC CTTTCTTTACAATAC TERM 4150 3284016 - 3284030 + T 100 -12.8 -5.13137 | opp_overlap 3284016, overlap 3284009 TGTTCGTTGATAAAA GGCCGC AGA GCGGCC TTTTTCCTTTCTTTA TERM 4151 3284030 - 3284016 - T 95 -12.8 -4.36914 | opp_overlap 3284016 3284009 TGTTCGTTGATAAAA GGCCGC AGA GCGGCC TTTTTCCTTTCTTTA greA 3284555 - 3284079 - | transcription elongation factor GreA TERM 4152 3284117 - 3284128 + g 72 -7.2 -4.25104 | CTTCAAATTCTACTT CGCC GCCC GGCG TTTTGATGACCACAA TERM 4153 3284688 - 3284657 - H 89 -5.2 -5.68023 | gap 1, overlap 3284659 CCAGAAGCAAAAAAA TA-CCGACCCGGG TACAAGT CCCAGGTCAGCTA CAATTCACATTTTGA TERM 4154 3284685 - 3284659 - H 86 -9.4 -4.46828 | overlap 3284657 AGAAGCAAAAAAATA CCGACCCGGG TACAAGT CCCAGGTCAG CTACAATTCACATTT TERM 4155 3285611 - 3285595 - g 70 -5.8 -4.24326 | AAAGATGAGTTAAAA CAGGCG GGTAT CACCTG GAGCGGAACACTGCT dacB 3284803 - 3286236 + | D-alanyl-D-alanine carboxypeptidase/endopeptidase TERM 4156 3286270 - 3286244 - T 100 -18.1 -4.71382 | opp_overlap 3286248, overlap 3286248 ACAATTAGTCAAAAA GAAACCCCGGC GCATG GCCGGGGTTTC AGATTATTGACAAAG TERM 4157 3286248 - 3286266 + T 95 -13.1 -3.72051 | opp_overlap 3286244 3286248 TTAGTCAAAAAGAAA CCCCGGC GCATG GCCGGGG TTTCAGATTATTGAC TERM 4158 3286266 - 3286248 - T 100 -13.1 -4.89063 | opp_overlap 3286248, overlap 3286244 TTAGTCAAAAAGAAA CCCCGGC GCATG GCCGGGG TTTCAGATTATTGAC obgE 3287594 - 3286422 - | GTPase ObgE TERM 4159 3286772 - 3286788 + g 72 -7.9 -3.91506 | opp_overlap 3286763 3286762, overlap 3286770 3286774 ACCAACGCGGTTTCG CCGCCAG ATC CTGGCTG TATTTTTCCAGCTCG TERM 4160 3286774 - 3286786 + g 71 -9.1 -3.54256 | opp_overlap 3286763 3286762, overlap 3286772 3286770 CAACGCGGTTTCGCC GCCAG ATC CTGGC TGTATTTTTCCAGCT yhbE 3288575 - 3287610 - | hypothetical protein TERM 4161 3287842 - 3287805 - G 76 -9.1 -3.74198 | gap 1, overlap 3287798 AAAAAACAGCGTAAA CAGTG-GGGTGAGCGTGA TGA TCGCGCTCACCTGCGCTG CCTGCCAGCGAGCCA TERM 4162 3288673 - 3288652 - R 100 -15.9 -4.75174 | opp_overlap 3288652 TATCGAATGTAAAAA GCCCCGCAA CGTG TTGCGGGGC TTTCATCCGTTACCG TERM 4163 3288652 - 3288673 + r 100 -15.9 -3.794 | opp_overlap 3288652 TATCGAATGTAAAAA GCCCCGCAA CGTG TTGCGGGGC TTTCATCCGTTACCG rpmA 3288959 - 3288702 - | 50S ribosomal protein L27 rplU 3289291 - 3288980 - | 50S ribosomal protein L21 TERM 4164 3290088 - 3290060 - g 70 -5.1 -4.3586 | opp_overlap 3290078 TTATCTATAGCAAAA CCGCGCGTCTG TTTGAGG CTGCCGCGCAG TGTTCCGGGATTCTG TERM 4165 3290236 - 3290226 - g 81 -6.8 -4.67755 | ACAGTTAGGTAAAAA CGTC GGC GACG ATCTGAACGAAGGTA ispB 3289549 - 3290520 + | octaprenyl diphosphate synthase TERM 4166 3290534 - 3290552 + F 90 -16 -2.7386 | AATCCCCTCCCTTCA TCCCGCGC AGT GCGCGGGA TGATTCCAGTAAATT nlp 3290747 - 3291025 + | DNA-binding transcriptional regulator Nlp murA 3292332 - 3291073 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 4167 3291830 - 3291852 + g 86 -10.6 -3.92075 | opp_overlap 3291828 GCAGCACACATGATG GTCACCGTTG CGC CAACGCTGAC TTTATCCATCACGAT yrbA 3292656 - 3292387 - | hypothetical protein TERM 4168 3292483 - 3292506 + g 76 -3.8 -5.00884 | CGCAATATATTCCAT CAGCGGGC CATAGACC GTCTGCTG TTTTTTAACCCGACT TERM 4169 3292741 - 3292717 - R 85 -7.2 -5.05712 | gap 1, overlap 3292736 ATAAATAAGCAAAAA GCCTCG-CTGA TAAA TCAGACAAGGC TCGACTTGCAGGCAG yrbB 3293190 - 3292801 - | hypothetical protein yrbC 3293729 - 3293094 - | hypothetical protein TERM 4170 3293252 - 3293265 + gr 70 -4.5 -4.57569 | overlap 3293253 CGTAAGCTTGCCAGT TTCCC GTCT GGGAG TTTTTACGCCACTGG yrbD 3294299 - 3293748 - | cytoplasmic membrane protein TERM 4171 3294253 - 3294234 - G 72 -5.6 -4.46112 | CTTCAGGCAAACAAA CAGCGCCG CCAG CAGTGCTG CTAATAAAAAGATAC yrbE 3295086 - 3294304 - | integral membrane protein yrbF 3295903 - 3295094 - | putative ABC transporter ATP-binding protein YrbF TERM 4172 3296602 - 3296625 + G 90 -7.4 -4.87665 | gap 1 CTTGCAGAGCTGCCG CGTGAC-GGCG GAT TGCCCGTCGCG TTTTTATGGCTCGGC TERM 4173 3296824 - 3296811 - g 72 -6.7 -4.24002 | TCGCAAAGGTGAAAA CGACA TTGC TGTCG GAAATATCATTGGCG TERM 4174 3296939 - 3296950 + G 70 -4.4 -4.47888 | ACTACAACGTGATGT TGCT GGTG AGCA TTATTTTTGCGTTGC yrbG 3296113 - 3297078 + | putative calcium/sodium:proton antiporter TERM 4175 3298008 - 3298026 + G 84 -11 -3.79138 | ATATCACCTCCGTGA TGGTTGCC GAT GGCGACCA TTTACTCGGTGTGTT yrbH 3297071 - 3298078 + | D-arabinose 5-phosphate isomerase yrbI 3298099 - 3298665 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase TERM 4176 3298754 - 3298743 - gf 70 -3.6 -4.59511 | AATATGGCCGAAAAA GACG ATAC CGCC CAGGTGGTCGTCAAC yrbK 3298662 - 3299237 + | hypothetical protein TERM 4177 3299745 - 3299731 - gf 71 -3.4 -4.80417 | overlap 3299732 GACAAAAACAACAAA GGCCAG ACC CCGGCA CAGAAGAAGGGTAAT yhbN 3299185 - 3299763 + | hypothetical protein yhbG 3299770 - 3300495 + | putative ABC transporter ATP-binding protein YhbG rpoN 3300543 - 3301976 + | RNA polymerase factor sigma-54 yhbH 3301999 - 3302286 + | putative sigma(54) modulation protein TERM 4178 3302314 - 3302340 + F 95 -13 -3.93236 | overlap 3302315 TTAGCATGTGCATGG CGGCCTGTTGTG CGG CACAACGGGCCA TTTGTACGGTTAATG TERM 4179 3302315 - 3302339 + F 100 -16.5 -2.95459 | overlap 3302314 TAGCATGTGCATGGC GGCCTGTTGTG CGG CACAACGGGCC ATTTGTACGGTTAAT TERM 4180 3302539 - 3302551 + G 81 -6.9 -4.61231 | overlap 3302535 AAACAACTTAGCCTG CCGCC TCA GGTGG TTTTTGAAGCTATCC ptsN 3302404 - 3302895 + | sugar-specific enzyme IIA component of PTS TERM 4181 3302949 - 3302935 - f 74 -8.6 -3.96148 | CGTTGTGAGGAGAAA CAGTAC ATG GTACTG ATGATCGTCAGCGGA yhbJ 3302941 - 3303795 + | hypothetical protein TERM 4182 3303849 - 3303824 - g 88 -11.1 -4.13654 | overlap 3303827 TGTTGAAATCACAAA CAAGCTGGGCA TGCA TGCCCGGCCTG CAATGAAGCTGTTTG TERM 4183 3303846 - 3303827 - g 82 -9.2 -4.1851 | overlap 3303824 TGAAATCACAAACAA GCTGGGCA TGCA TGCCCGGC CTGCAATGAAGCTGT ptsO 3303792 - 3304064 + | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) TERM 4184 3304052 - 3304073 + F 72 -10.3 -2.75963 | overlap 3304051 CTTTAATTCTGGTTT TGATGAAGA TTAA TCTTCATCA CTTTGACATACAACT yrbL 3304277 - 3304771 + | hypothetical protein yhbL 3306283 - 3305630 - | isoprenoid biosynthesis protein TERM 4185 3306493 - 3306515 + r 82 -5.4 -5.19261 | overlap 3306494 3306496 TGGCGCAGTATTCGC GCACCCCGGT CTA GCCGGGGTCA TTTTTTAGTGGCTTT TERM 4186 3306494 - 3306514 + r 76 -8.9 -3.6993 | overlap 3306493 3306496 GGCGCAGTATTCGCG CACCCCGGT CTA GCCGGGGTC ATTTTTTAGTGGCTT TERM 4187 3306496 - 3306512 + r 79 -11.5 -3.41701 | overlap 3306494 3306493 CGCAGTATTCGCGCA CCCCGGT CTA GCCGGGG TCATTTTTTAGTGGC arcB 3308849 - 3306513 - | aerobic respiration control sensor protein ArcB TERM 4188 3306910 - 3306926 + g 70 -6.5 -4.2704 | GTACTCTCCTCATCA TCCTGGG TAT CCCAGAA TTTCTTGATCATCGC TERM 4189 3308246 - 3308270 + g 74 -2.8 -4.92239 | CCGGTGAGTAAACAT CAGCAGGTTT CAGGT GAACCAGTTG TTTTTCGCTTTTTCC yhcC 3309850 - 3308945 - | hypothetical protein TERM 4190 3309318 - 3309291 - G 73 -11.3 -2.60615 | overlap 3309290 3309288 AGCGTTTGCAAACAT TCAGCCTGCCC TTCGCC AGGCAGGCCGA CAATTAAGTGGGAAC TERM 4191 3310173 - 3310189 + H 71 -7.3 -4.0371 | opp_overlap 3310175 AACACGCCTTTATGA CAGTCAG GAA TTGACTG TTTCTCTAACGACTC TERM 4192 3310352 - 3310370 + H 76 -11.8 -2.71918 | overlap 3310351 3310350 3310354 GCTGGAAGCTTTCTG GATGAGCA GCC TGCTCATC ATATTTATGCAGTAA TERM 4193 3311121 - 3311139 + G 70 -4.5 -4.56961 | gap 1, overlap 3311125 TAAAGGTCTGTGTAT GC-CGGCG GATC TGCCGCGC TTTTATCTGGATCTT TERM 4194 3311726 - 3311713 - g 72 -5.2 -4.58283 | GAAGTGGTCGAAAAA GGCC GCGTCG GGCC AGGCGAACTGATGGT gltB 3310549 - 3315009 + | glutamate synthase subunit alpha TERM 4195 3315796 - 3315774 - g 74 -7.6 -4.07568 | overlap 3315780 CGGCGGGCTGGAAAA CGAAGACGCC GAT GGCGTGTACG CAGCGCTGCCGTTCC gltD 3315022 - 3316440 + | glutamate synthase subunit beta TERM 4196 3316950 - 3316928 - f 100 -16.4 -3.6106 | overlap 3316939 TTCAACATGTTGAAA TTCGCCAGAC AGT GTCTGGCGAA TTAACACCATTGGGA TERM 4197 3317001 - 3316955 - f 100 -16 -3.33696 | opp_overlap 3316998, overlap 3316939 3316957 TGTCTGGCGAATTAA CACCATTGGGAATTCCGCAGAC ACC ATCTGCAGAATTCCCATCGGCA AAGATTTGGCAGACG TERM 4198 3316999 - 3316957 - f 100 -18.6 -3.23853 | opp_overlap 3316998, overlap 3316939 3316955 TCTGGCGAATTAACA CCATTGGGAATTCCGCAGAC ACC ATCTGCAGAATTCCCATCGG CAAAGATTTGGCAGA TERM 4199 3317030 - 3317004 - f 88 -12.4 -3.57263 | opp_overlap 3316998, overlap 3317006 ATTCCCATCGGCAAA GATTTGGCAGAC GCT GTCTGCCAAATG AGAGGCTGTTTGATA TERM 4200 3317028 - 3317006 - f 100 -15 -3.36515 | opp_overlap 3316998, overlap 3317004 TCCCATCGGCAAAGA TTTGGCAGAC GCT GTCTGCCAAA TGAGAGGCTGTTTGA SFV_3244 3317177 - 3317479 + | IS600 ORF1 SFV_3245 3317620 - 3318333 + | IS600 ORF2 yhcH 3319231 - 3318767 - | hypothetical protein yhcI 3320103 - 3319228 - | N-acetylmannosamine kinase yhcJ 3320789 - 3320100 - | N-acetylmannosamine-6-phosphate 2-epimerase TERM 4201 3320829 - 3320810 - R 72 -10.7 -2.78679 | overlap 3320809 TTCCCTTAGCGAAAG GCCCGGT ACATAG ACCGGGC AACAGGATTAACTTT nanT 3322327 - 3320837 - | putative sialic acid transporter TERM 4202 3322340 - 3322361 + r 95 -12.3 -3.8377 | gap 1 CATTGTGAGTCTCCC GCG-GTGGGC GAT GCCCACACGC TTTGGTATGAAAATT TERM 4203 3322439 - 3322389 - R 74 -11.2 -2.89683 | opp_overlap 3322419 3322421 ATTGTAGGGTACAGA TGCGTTTATTTCCCCTCACCCG GTAGGGG CGAGCGAGGGGAAAACAACTCA CCCGCGCTCTTGCAT nanA 3323330 - 3322437 - | N-acetylneuraminate lyase yhcK 3324234 - 3323452 - | transcriptional regulator NanR SFV_3252 3324800 - 3324513 - | putative IS1 encoded protein insB 3324875 - 3325378 + | IS1 ORF2 TERM 4204 3326076 - 3326065 - g 82 -3 -5.24129 | GCTTTTGACAAAAAA GATA AAAA TATC AATCACGAACAGGCA TERM 4205 3326671 - 3326681 + G 78 -8.2 -4.15565 | ACGTCAGGAATTGCA GGCG TTT CGCC TTTTGCGGTGGTGAA yhcL 3325504 - 3326766 + | putative cryptic C4-dicarboxylate transporter DcuD TERM 4206 3326808 - 3326778 - T 100 -12.7 -4.77157 | opp_overlap 3326778 3326780 3326785, overlap 3326780 3326785 TTAAGTCATTAAAAA GACAAAACAGGCC GCCTG GGCCTGTTTTGTA TTACTTCACAACGCG TERM 4207 3326778 - 3326808 + T 85 -12.7 -3.33696 | opp_overlap 3326778 3326780 3326785, overlap 3326780 3326785 TTAAGTCATTAAAAA GACAAAACAGGCC GCCTG GGCCTGTTTTGTA TTACTTCACAACGCG TERM 4208 3326806 - 3326780 - T 100 -15.3 -3.9993 | opp_overlap 3326778 3326780 3326785, overlap 3326778 3326785 AAGTCATTAAAAAGA CAAAACAGGCC GCCTG GGCCTGTTTTG TATTACTTCACAACG TERM 4209 3326780 - 3326806 + T 100 -15.3 -3.23853 | opp_overlap 3326780 3326778 3326785, overlap 3326778 3326785 AAGTCATTAAAAAGA CAAAACAGGCC GCCTG GGCCTGTTTTG TATTACTTCACAACG TERM 4210 3326785 - 3326801 + T 93 -9.4 -4.73864 | opp_overlap 3326780 3326778 3326785, overlap 3326780 3326778 ATTAAAAAGACAAAA CAGGCC GCCTG GGCCTG TTTTGTATTACTTCA TERM 4211 3326801 - 3326785 - T 100 -9.4 -5.00027 | opp_overlap 3326785 3326780 3326778, overlap 3326780 3326778 ATTAAAAAGACAAAA CAGGCC GCCTG GGCCTG TTTTGTATTACTTCA sspB 3327306 - 3326809 - | ClpXP protease specificity-enhancing factor sspA 3327950 - 3327312 - | stringent starvation protein A TERM 4212 3328293 - 3328306 + r 100 -9.5 -5.03145 | opp_overlap 3328293 TTAGCCATAAAAAAA CCCGC CGAA GCGGG TTTTTTCGCAAATTG TERM 4213 3328306 - 3328293 - R 100 -9.5 -5.64274 | opp_overlap 3328293 TTAGCCATAAAAAAA CCCGC CGAA GCGGG TTTTTTCGCAAATTG rpsI 3328737 - 3328345 - | 30S ribosomal protein S9 rplM 3329181 - 3328753 - | 50S ribosomal protein L13 TERM 4214 3329043 - 3329058 + g 70 -6.8 -4.05446 | CACCGGTATCTACGT GCGGAG TATA TTCCGC TTTGTGCTTACCGCG TERM 4215 3329359 - 3329377 + r 100 -8.8 -5.06735 | opp_overlap 3329357 GATTATAGAGAAGTC GGGGTCAA AGA TCGACCCC TTTTTGTGATTTGTG yhcM 3330527 - 3329400 - | hypothetical protein TERM 4216 3330982 - 3330959 - g 100 -11 -4.65168 | opp_overlap 3330959 AGCACATGGCAAAAA GCTCCAGCAG CCTG CTGCCGGAAC TGTCTGCTGAAGCAA yhcB 3330721 - 3331119 + | cytochrome d ubiquinol oxidase subunit III TERM 4217 3331130 - 3331148 + F 79 -12.4 -2.83517 | ACTAATTTATTTTTC GGGCGCAG CCA TTGCGCCC TCCTCTTCTCTCCCT degQ 3331273 - 3332640 + | serine endoprotease TERM 4218 3332650 - 3332679 + F 73 -10.7 -3.11192 | opp_overlap 3332650 CGTTAATGTCGTAAA CCGGGCATCAGGC TGAC GTGTGATGTCCGG TTAACTCGTGGTATG TERM 4219 3333497 - 3333470 - g 78 -10.6 -3.42124 | gap 1, opp_overlap 3333484, overlap 3333464 CAAAATTATGGATAA GCTGATC-CGCGA TGG TCGCGTGATCCGC GGCTACATTGGTATC degS 3332730 - 3333797 + | serine endoprotease TERM 4220 3333842 - 3333813 - T 79 -9.4 -4.09685 | opp_overlap 3333819, overlap 3333819 GTCGAGTGCTCAAAA CAAAAACCGGAG TCTGTG CTCCGGTTTTTT ATTATTCGCTAATCA TERM 4221 3333819 - 3333836 + T 100 -9.1 -5.64873 | opp_overlap 3333819 3333813 TGCTCAAAACAAAAA CCGGAGT CTGT GCTCCGG TTTTTTATTATTCGC TERM 4222 3333836 - 3333819 - T 100 -8.4 -5.45802 | opp_overlap 3333819, overlap 3333813 TGCTCAAAACAAAAA CCGGAG TCTGTG CTCCGG TTTTTTATTATTCGC mdh 3334797 - 3333859 - | malate dehydrogenase argR 3335232 - 3335702 + | arginine repressor TERM 4223 3335853 - 3335843 - f 82 -3.2 -5.45726 | CATACGGTAAAAAAA GCAC ATT ATGC AAAATTCATTATCTA yhcN 3336016 - 3336330 + | hypothetical protein TERM 4224 3336358 - 3336374 + T 100 -15.1 -5.78622 | opp_overlap 3336356 TTGTCCGACGATATT GCCCCCG GTT CGGGGGC TTTTTTTTGCGCTAA yhcO 3336658 - 3336386 - | hypothetical protein TERM 4225 3336724 - 3336742 + r 95 -12.4 -4.29176 | opp_overlap 3336724 ATAGCCATGAAAAAA CCGACGCT TTT GGCGTCGG TTTTGACTTAACTAT TERM 4226 3336742 - 3336724 - R 100 -11.7 -5.17353 | opp_overlap 3336724 ATAGCCATGAAAAAA CCGACGC TTTTG GCGTCGG TTTTGACTTAACTAT yhcP 3338717 - 3336750 - | p-hydroxybenzoic acid efflux subunit AaeB yhcQ 3339655 - 3338723 - | p-hydroxybenzoic acid efflux subunit AaeA TERM 4227 3339428 - 3339442 + g 76 -4.2 -5.0133 | CGGCTGGTCGATGGT GAACAG TAT CTGTCC TTTTTTCACCAGCTG yhcR 3339935 - 3339663 - | hypothetical protein qseA 3340049 - 3340978 + | putative DNA-binding transcriptional regulator tldD 3342551 - 3341106 - | protease TldD TERM 4228 3341961 - 3341932 - G 74 -6.3 -4.50661 | gap 1, opp_overlap 3341948 AACTCATAACCAAAA CGACCGCCGCCGCC ACT GGC-ACCGCGTTCG CGTTTGCCATCTTCT TERM 4229 3342035 - 3341999 - G 81 -10.8 -3.65827 | gap 1 GAACGCTCACGGAAA GACGCACCAGCGGACGG ACAT CCG-CCGCTAGCGTGCC GTCGGTGGCCGCAAC yhdRP 3346507 - 3342707 - | hypothetical protein TERM 4230 3343325 - 3343336 + g 74 -5.8 -4.54727 | opp_overlap 3343306 GGCGGCATCAATTTT CTGC CCAC GCAG TTTTCCTTTCAGCGA cafA 3348044 - 3346575 - | ribonuclease G yhdE 3348627 - 3348034 - | Maf-like protein mreD 3349124 - 3348636 - | rod shape-determining protein MreD mreC 3350209 - 3349124 - | cell wall structural complex MreBCD transmembrane component MreC TERM 4231 3349886 - 3349915 + g 76 -7.7 -4.27117 | opp_overlap 3349888, overlap 3349894 ACGCAGCGGGGAACC CAGCAGCTCGCGC AGAC GCGCGTTCTCCTG TTTGTATTGTCCAAG TERM 4232 3349894 - 3349907 + g 73 -9.5 -3.59627 | opp_overlap 3349888, overlap 3349886 GGGAACCCAGCAGCT CGCGC AGAC GCGCG TTCTCCTGTTTGTAT TERM 4233 3350268 - 3350235 - R 77 -11.7 -2.78596 | opp_overlap 3350230, overlap 3350238 TATTCTCGTATCAGA CCAGGCAGGGTAAAC AGAC GCTTCCCCTGCCTGC ATCCGATTACTCTTC TERM 4234 3350265 - 3350238 - R 76 -12 -2.66316 | opp_overlap 3350230, overlap 3350235 TCTCGTATCAGACCA GGCAGGGTAAAC AGAC GCTTCCCCTGCC TGCATCCGATTACTC mreB 3351378 - 3350275 - | regulator of ftsI, penicillin binding protein 3 TERM 4235 3351087 - 3351070 - G 72 -8.3 -3.73647 | opp_overlap 3351070 3351072 TTCAGTCACGAAGAA GTCGGCG ATAA CGCCGTC TTTCATTGGGCGAAT TERM 4236 3351070 - 3351087 + g 74 -8.3 -3.90291 | opp_overlap 3351070, overlap 3351072 TTCAGTCACGAAGAA GTCGGCG ATAA CGCCGTC TTTCATTGGGCGAAT TERM 4237 3351072 - 3351085 + g 71 -9.5 -3.54146 | opp_overlap 3351070, overlap 3351070 CAGTCACGAAGAAGT CGGCG ATAA CGCCG TCTTTCATTGGGCGA yhdA 3353563 - 3351623 - | regulatory protein CsrD TERM 4238 3352341 - 3352324 - G 72 -8.3 -3.85698 | CCGGTTTTTGATAAA GGCGCGG GCCG CCGCGAC TGAGCATTTGCTCGA TERM 4239 3354424 - 3354476 + G 70 -5.7 -4.33819 | gap 3, overlap 3354417 ATTACGGCGGCTGCG TGGCG-GCCTGTGGTCTGGC-GGGTG GTTT TACTCTGCCA-ACCACGGTCATGCCA TTTATTCTGCGTAAT yhdH 3353715 - 3354689 + | putative dehydrogenase accB 3355667 - 3356137 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 4240 3356642 - 3356625 - g 72 -8.3 -3.78775 | CCGGTGATTATCAAA GCCTCCG GCGG CGGCGGC GGTCGCGGTATGCGC TERM 4241 3357099 - 3357081 - g 74 -8 -4.00756 | GACCTGATCAAAGAA CAGCTGCG TAT CGCTGCCG GTCAACCGCTGTCGA accC 3356148 - 3357497 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 4242 3357517 - 3357533 + F 100 -13.7 -5.5112 | opp_overlap 3357517 GCAAAAGCGTCAAAA GGCCGGA TTT TCCGGCC TTTTTTATTACTGGG TERM 4243 3357533 - 3357517 - f 100 -13.7 -4.19276 | opp_overlap 3357517 GCAAAAGCGTCAAAA GGCCGGA TTT TCCGGCC TTTTTTATTACTGGG yhdT 3357606 - 3357848 + | hypothetical protein panF 3357838 - 3359289 + | sodium/panthothenate symporter TERM 4244 3359364 - 3359392 + G 77 -8.9 -4.11216 | opp_overlap 3359329 3359373, overlap 3359365 GATCTTAGCGATGCG CTGATGGAAGCGG GTG CCGTTTCTATCAC TTTTCAGGATACCCA TERM 4245 3359365 - 3359391 + G 79 -12.4 -3.06515 | opp_overlap 3359329 3359373, overlap 3359364 ATCTTAGCGATGCGC TGATGGAAGCGG GTG CCGTTTCTATCA CTTTTCAGGATACCC prmA 3359301 - 3360182 + | ribosomal protein L11 methyltransferase TERM 4246 3360276 - 3360236 - f 90 -9.9 -4.43189 | opp_overlap 3360234 AGCAAGCTCACAAAA GGCACGTAAATTTGC CGATTATTTAC GCAAATTTGCGTGCC AAAATTTTCATTCAT TERM 4247 3360316 - 3360301 - f 81 -3.3 -5.38958 | opp_overlap 3360301 3360310, overlap 3360312 ATTCATAAAGAAAAA TTGAG AACTTA CTCAA ATTTCTTTGAGTGTA TERM 4248 3360476 - 3360462 - f 76 -4.2 -5.00884 | overlap 3360463 ATCTCGTGCAAAAAA TGCGTA ATA TACGCC GCCTTGCAGTCACAG yhdG 3360511 - 3361476 + | tRNA-dihydrouridine synthase B fis 3361502 - 3361798 + | DNA-binding protein Fis TERM 4249 3361828 - 3361853 + F 100 -8.2 -5.29782 | opp_overlap 3361828 ATGCTTGATTAAAAA GGCGCTACTC GGCATG GGGAAGCGCC TTTTTTATAGGTGTC TERM 4250 3361853 - 3361828 - f 74 -6 -4.7254 | opp_overlap 3361828 ATGCTTGATTAAAAA GGCGCTACTC GGCATG GGGAAGCGCC TTTTTTATAGGTGTC TERM 4251 3362719 - 3362705 - g 88 -5.6 -5.21683 | AGTGAAAAAAAGAAA GACCGG CAA CCTGTC AAAACGAAGCCGGTT yhdJ 3361884 - 3362768 + | putative methyltransferase insB 3363549 - 3363046 - | IS1 ORF2 SFV_3289 3363642 - 3363950 + | putative IS1 encoded protein TERM 4252 3363944 - 3363928 - f 87 -9.5 -4.27259 | opp_overlap 3363930, overlap 3363941 CACAGACAGGTAAAA GACGTTT CCC AAACGTC CTATAACGATAATTT yhdW 3363979 - 3365004 + | putative periplasmic binding transport protein TERM 4253 3365021 - 3365042 + F 85 -13.7 -3.07233 | opp_overlap 3365020 3365023, overlap 3365023 3365038 TCGGTGTGAGGTAAC GAGCGTCGC TACG GCGGCGCTC TCTTCAGCGTTATGC TERM 4254 3365023 - 3365040 + F 73 -10.5 -3.09135 | opp_overlap 3365020 3365023, overlap 3365021 3365038 GGTGTGAGGTAACGA GCGTCGC TACG GCGGCGC TCTCTTCAGCGTTAT TERM 4255 3365579 - 3365603 + F 74 -7.1 -4.30933 | TCGTGGGCTTTATAT TCCGTCACC GCAGCTG GGAGACGGA TTTATTGCGTTTATC TERM 4256 3367271 - 3367283 + G 73 -4.1 -4.87803 | TGTTTTCGCCGCGCT GATCT ACT GGATC TTTTGTTTCAGCATG yhdY 3366252 - 3367355 + | putative transport system permease protein yhdZ 3367363 - 3368121 + | putative ATP-binding component of a transport system TERM 4257 3368167 - 3368148 - f 100 -13.6 -5.0925 | opp_overlap 3368148 3368137 TTCGAAAAGCAAAAA GGCCATCC TTTC GGATGGCC TTTCGCTTGATTTGA TERM 4258 3368148 - 3368167 + F 100 -13.6 -3.83214 | opp_overlap 3368148, overlap 3368137 TTCGAAAAGCAAAAA GGCCATCC TTTC GGATGGCC TTTCGCTTGATTTGA TERM 4259 3368559 - 3368580 + F 74 -8.7 -3.91196 | GCTAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 4260 3371048 - 3371060 + F 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 4261 3371602 - 3371626 + F 71 -8 -3.93061 | gap 1, opp_overlap 3371608 AAAATTTGAGAGACT CAC-GAACAAC TTTC GTTGTTCAGTG TTTCAATTTTCAGCT TERM 4262 3371828 - 3371841 + F 75 -6.7 -4.41177 | overlap 3371793 GTATCAGTCTGCTTC GCAAG ACGC CTTGC TTTTCACTTTCTATC TERM 4263 3373618 - 3373630 + G 74 -7.7 -4.00532 | CACTGTCGCGAGGTG GCGTA TAT TACGC TTTCCTCTTTCAGAG TERM 4264 3373650 - 3373664 + G 79 -4.2 -5.1485 | opp_overlap 3373650, overlap 3373639 3373651 CTCTTTCAGAGTCAA CCCTGA ATT TCAGGA TTTTTCTCTTCGTTG yrdA 3373615 - 3374463 + | putative transferase yrdB 3374696 - 3374439 - | hypothetical protein aroE 3375511 - 3374693 - | shikimate 5-dehydrogenase yrdC 3376133 - 3375516 - | putative ribosome maturation factor TERM 4265 3376148 - 3376138 - R 72 -5.4 -4.38712 | TTTACTGGCACAAAA GTGT TTT ACAC CCTGCGCGGTTTTCT TERM 4266 3376509 - 3376473 - R 86 -13.1 -3.34233 | overlap 3376476 3376502 CCAGAACTTTGACAA TATGTCCATCCGCTGAA GAT TTCAGAGGACGGACGTA GTCACACGCCGGATA TERM 4267 3376506 - 3376476 - R 86 -14.8 -2.53747 | overlap 3376473 3376502 GAACTTTGACAATAT GTCCATCCGCTGAA GAT TTCAGAGGACGGAC GTAGTCACACGCCGG smg 3377137 - 3376664 - | hypothetical protein TERM 4268 3376972 - 3376990 + gr 74 -6 -4.57569 | TCGGTTCTGCCAACC CTTCCTGA TAA TCAGCAAG TTTTTCCAGCCATAG smf 3378233 - 3377109 - | hypothetical protein TERM 4269 3377694 - 3377676 - GH 72 -8.8 -3.53811 | overlap 3377659 3377678 GCCACCCTGTTCAAA CAGACTGG CAG CCAGTCGG GCATGGCGACGCGGA TERM 4270 3377692 - 3377678 - GH 73 -10 -3.34715 | overlap 3377659 3377676 CACCCTGTTCAAACA GACTGG CAG CCAGTC GGGCATGGCGACGCG def 3378398 - 3378907 + | peptide deformylase TERM 4271 3378968 - 3378990 + G 100 -14.9 -3.7821 | GTACACCTGACTTTG CAGCGCGTC ATCTC GACGCGCTG TTGTCTTCTGGTCAT TERM 4272 3379070 - 3379060 - g 74 -3.2 -5.02074 | overlap 3379064 GGACGCGGTAAAAAA CTGA TGC CCAG CCCGATTAAAGTTCT TERM 4273 3379153 - 3379143 - g 85 -6.8 -4.77165 | overlap 3379144 GCGTCCACAAGAAAA CCAG CAA CTGG TCGCCGATTTGCAGG fmt 3378922 - 3379869 + | methionyl-tRNA formyltransferase TERM 4274 3379885 - 3379903 + F 70 -2.2 -5.01535 | overlap 3379886 TAGTCCACTCTTCTA AGCCCGGT CTT GCCGAGCA TTTTTATACTTATGA TERM 4275 3379940 - 3379924 - g 88 -5.1 -5.17353 | overlap 3379927 ATACTTATGAAAAAA CAACGTA ATT TACGTAG CATGGCGGCCCAGGC TERM 4276 3379937 - 3379927 - g 75 -5.4 -4.67552 | overlap 3379924 CTTATGAAAAAACAA CGTA ATT TACG TAGCATGGCGGCCCA TERM 4277 3380063 - 3380077 + G 77 -10 -3.60971 | opp_overlap 3380032 AAGAGTTGTGCTTTG GCGTAC TGC GTACGC TTTCGCAGTTAGACT TERM 4278 3381161 - 3381147 - g 73 -3.5 -4.87133 | opp_overlap 3381157 ACCGGGTAAACAAAA TCAGC CTGGT GCCGA AGAGGGCGACGGCTT sun 3379894 - 3381204 + | 16S rRNA methyltransferase B TERM 4279 3381927 - 3381916 - g 77 -5.8 -4.62783 | CAGCGACTGGAAAAA CCGT ATAA ACGG ATCATGCTGGTTGGT trkA 3381226 - 3382602 + | potassium transporter peripheral membrane component TERM 4280 3382604 - 3382631 + F 100 -15.8 -3.89938 | opp_overlap 3382607 3382610, overlap 3382607 3382610 CTTTCTTCTTGTAAT TAATAAGGCGTC TAAT GACGCCTTATTA TTTCCCTTTGATTAT TERM 4281 3382628 - 3382607 - f 86 -13.1 -3.33696 | opp_overlap 3382607 3382604 3382610, overlap 3382610 TCTTCTTGTAATTAA TAAGGCGTC TAAT GACGCCTTA TTATTTCCCTTTGAT TERM 4282 3382607 - 3382628 + F 95 -13.1 -4.05629 | opp_overlap 3382607 3382610, overlap 3382604 3382610 TCTTCTTGTAATTAA TAAGGCGTC TAAT GACGCCTTA TTATTTCCCTTTGAT TERM 4283 3382610 - 3382625 + F 87 -10.4 -4.13254 | opp_overlap 3382607 3382610, overlap 3382607 3382604 TCTTGTAATTAATAA GGCGTC TAAT GACGCC TTATTATTTCCCTTT TERM 4284 3382625 - 3382610 - f 83 -10.4 -3.81146 | opp_overlap 3382610 3382607 3382604, overlap 3382607 TCTTGTAATTAATAA GGCGTC TAAT GACGCC TTATTATTTCCCTTT TERM 4285 3382779 - 3382752 - f 75 -9.9 -3.61398 | CCTGTCTGGCAACAA TCGCGCCCATC TATATT GATGGACACGA ACGATGAATTCCCAG TERM 4286 3383119 - 3383131 + G 73 -9.1 -3.62046 | GCTAAGCAGGCGTTA CAGCC TGG GGCTG TTGTTGCCCGGATCG SFV_3310 3382783 - 3383457 + | ISSfl4 ORF1 SFV_3311 3383454 - 3383801 + | ISSfl4 ORF2 TERM 4287 3384052 - 3384015 - g 70 -6.2 -4.1585 | overlap 3384016 3384020 TCATAAGCTTGAAAA TCAGATCCGACAGGCA GAAAAA CGACTGTCGGAACTGG AAAACCGGCTGAACA TERM 4288 3384074 - 3384057 - g 82 -9.1 -4.19238 | overlap 3384070 GTCGGAACTGGAAAA CCGGCTG AACA CAGCCAG AAATCTTCTGGAAGA SFV_3312 3383821 - 3385422 + | ISSfl4 ORF3 SFV_3313 3385713 - 3385426 - | ISSfl4 ORF1 TERM 4289 3385717 - 3385744 + r 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG TERM 4290 3385839 - 3385872 + r 82 -11.9 -3.37879 | opp_overlap 3385835 3385849, overlap 3385840 3385849 TGGGGATACTACGGG TATAAAAAAACCCGC CGGG GCGGGTTTTTTTACG TTGCTTCAGATTACT TERM 4291 3385840 - 3385871 + r 81 -13.2 -2.62246 | opp_overlap 3385835 3385849, overlap 3385839 3385849 GGGGATACTACGGGT ATAAAAAAACCCGC CGGG GCGGGTTTTTTTAC GTTGCTTCAGATTAC TERM 4292 3385862 - 3385849 - R 100 -9.5 -5.61596 | opp_overlap 3385840 3385839 3385849, overlap 3385835 ACGGGTATAAAAAAA CCCGC CGGG GCGGG TTTTTTTACGTTGCT TERM 4293 3385849 - 3385862 + r 100 -9.5 -5.54192 | opp_overlap 3385835 3385849, overlap 3385840 3385839 ACGGGTATAAAAAAA CCCGC CGGG GCGGG TTTTTTTACGTTGCT TERM 4294 3385872 - 3385897 + r 72 -8.3 -3.67102 | overlap 3385893 GGCGGGTTTTTTTAC GTTGCTTCAGA TTAC TCTGCAGCAGC TTCTGCTTTCTCTGA TERM 4295 3385893 - 3385903 + r 71 -6.8 -4.0371 | overlap 3385872 TCAGATTACTCTGCA GCAG CTT CTGC TTTCTCTGAACGATC rplQ 3386266 - 3385883 - | 50S ribosomal protein L17 rpoA 3387296 - 3386307 - | DNA-directed RNA polymerase subunit alpha TERM 4296 3386390 - 3386402 + g 74 -3.4 -5.01732 | CCAGCACGTCTTTAA TCTC AGTAA GAGA TTTTTTACCAAGGTT TERM 4297 3387337 - 3387319 - R 74 -10.4 -3.14132 | TCTCTTTGGTACTAA GCTTTACT TGG AGTAAAGC TCGACGATCAGGTGT rpsD 3387942 - 3387322 - | 30S ribosomal protein S4 TERM 4298 3387432 - 3387442 + g 70 -6.8 -4.12188 | overlap 3387429 CAGCATCAACTTCCA GCCA AGT TGGC TTTTCACGCTGCTCA TERM 4299 3387969 - 3387987 + r 76 -4.4 -5.00616 | opp_overlap 3387960 3387969 AACAAACCTGGAAAA CGAGGCGT TAT ACGCGACG TTTTTTCGGCGGACG rpsK 3388365 - 3387976 - | 30S ribosomal protein S11 TERM 4300 3388399 - 3388424 + r 70 -8.9 -3.39449 | overlap 3388400 ATTTCTTGATCGGTT TGCGCGGACCC TTAC GGGTACGTGCG TTGGTCTTGGTACGC TERM 4301 3388400 - 3388423 + r 71 -10.2 -2.63348 | overlap 3388399 TTTCTTGATCGGTTT GCGCGGACCC TTAC GGGTACGTGC GTTGGTCTTGGTACG rpsM 3388738 - 3388382 - | 30S ribosomal protein S13 TERM 4302 3388563 - 3388581 + g 77 -8.8 -4.05446 | ACAAATTTGGCAACT TCGTCACG CAG CGTGTCGA TTTGTCCTTCAGACA TERM 4303 3388855 - 3388826 - R 100 -12.3 -4.6645 | gap 1 TACAGACATACAAAA GATTG-GCTGGCTA ATC TAGCCAGCTCAACC CAACTTTGCAAGAAA rpmJ 3389001 - 3388885 - | 50S ribosomal protein L36 secY 3390364 - 3389033 - | preprotein translocase subunit SecY TERM 4304 3389566 - 3389520 - G 73 -9.4 -3.56921 | opp_overlap 3389526 3389534, overlap 3389518 GGGAACAGAATAATA CTGGAAGCGAAGATTGCCGGGA TTA CCCCCGCCATATTCACTTTCAG CGGTAAATGTGTGCT TERM 4305 3389931 - 3389900 - G 74 -10.2 -3.51032 | opp_overlap 3389906, overlap 3389906 AGCGGTGAAGTAGAA TGCAAAGCCCGG GTTAATCA CCAGGCCTTGCA TACCAGGCATATTCG rplO 3390806 - 3390372 - | 50S ribosomal protein L15 TERM 4306 3390752 - 3390765 + g 75 -5.2 -4.59853 | opp_overlap 3390745, overlap 3390745 CGATACCACGACCCA GGCG TTTACC CGCC TTTTTGGAGCCTTCG rpmD 3390989 - 3390810 - | 50S ribosomal protein L30 rpsE 3391496 - 3390993 - | 30S ribosomal protein S5 rplR 3391864 - 3391511 - | 50S ribosomal protein L18 rplF 3392407 - 3391874 - | 50S ribosomal protein L6 rpsH 3392812 - 3392420 - | 30S ribosomal protein S8 rpsN 3393151 - 3392846 - | 30S ribosomal protein S14 rplE 3393705 - 3393166 - | 50S ribosomal protein L5 TERM 4307 3393543 - 3393561 + g 93 -6 -5.24531 | TTGCTGCCAGGTCTG CTGCTG CGTTATC CAGCAG TTTTTTGTCAGCGAT TERM 4308 3393649 - 3393660 + g 81 -4.4 -5.12617 | opp_overlap 3393649, overlap 3393628 AGAATTGTAGTTAAA CTCA GTCA TGAG TTTTTTAACTACTTC rplX 3394034 - 3393720 - | 50S ribosomal protein L24 rplN 3394416 - 3394045 - | 50S ribosomal protein L14 TERM 4309 3394531 - 3394556 + r 90 -14.9 -3.25823 | opp_overlap 3394531, overlap 3394535 TATGGGTAGAAAAAA TAAACGGCTCA TTTC TGAGCCGTTTA TTCGTATCGAGAGAG TERM 4310 3394556 - 3394531 - R 100 -14.9 -5.252 | opp_overlap 3394531 3394535 TATGGGTAGAAAAAA TAAACGGCTCA TTTC TGAGCCGTTTA TTCGTATCGAGAGAG TERM 4311 3394535 - 3394552 + r 91 -11.3 -4.29106 | opp_overlap 3394531, overlap 3394531 GGTAGAAAAAATAAA CGGCTCA TTTC TGAGCCG TTTATTCGTATCGAG rpsQ 3394835 - 3394581 - | 30S ribosomal protein S17 TERM 4312 3394803 - 3394756 - G 86 -9.5 -4.36914 | gap 2, opp_overlap 3394775 GGGTGTTTCACAAAA CGTTCGATAGCAACAACAATGGA TTTC TCCATT-TTGTCGCTAAC-AACG CGACCTTGCAGAGTA rpmC 3395026 - 3394835 - | 50S ribosomal protein L29 rplP 3395436 - 3395026 - | 50S ribosomal protein L16 rpsC 3396150 - 3395449 - | 30S ribosomal protein S3 rplV 3396500 - 3396168 - | 50S ribosomal protein L22 rplB 3397631 - 3396810 - | 50S ribosomal protein L2 TERM 4313 3397667 - 3397687 + r 75 -9.7 -3.57462 | opp_overlap 3397670, overlap 3397670 CTCAGCGCCGCCAAC GAAGTCCAG ATT CTGGCCTTC TTTCAGGGTGACGTA rplW 3397951 - 3397649 - | 50S ribosomal protein L23 TERM 4314 3397918 - 3397906 - G 78 -9.1 -3.85817 | ACGCTTTTTCAGAAA CGTGC GGT GCACG CAGCACCTTCAGCAG rplD 3398553 - 3397948 - | 50S ribosomal protein L4 TERM 4315 3398521 - 3398533 + g 78 -10.5 -3.42663 | opp_overlap 3398516, overlap 3398520 TTCGGAAACAGTCAG CGCGC TCT GCGCG TCTTTCAATACTAAT rplC 3399193 - 3398564 - | 50S ribosomal protein L3 rpsJ 3399537 - 3399226 - | 30S ribosomal protein S10 TERM 4316 3399998 - 3400036 + G 73 -3.9 -4.84311 | gap 1, overlap 3400000 CAAAGCATGGCTTGT TACCTGA-CAGATTTACG TGCC CGTTACTCTGGTCAGGTC TTTTGTTCTATCAAG hopD 3399916 - 3400383 + | putative leader peptidase bfr 3400856 - 3400380 - | bacterioferritin, iron storage and detoxification protein TERM 4317 3400697 - 3400673 - G 79 -2.2 -5.26119 | gap 1, opp_overlap 3400673 3400675, overlap 3400668 3400675 CTTCTAAAAACAAAA TACGCTCGATA TATT TATC-AGCGTG TTTCATCTCATCGAT yheA 3401123 - 3400929 - | bacterioferritin-associated ferredoxin TERM 4318 3401261 - 3401276 + r 95 -11.8 -4.27316 | opp_overlap 3401261 TACGGGCAGCAAAAA GGGCGC CGAA GCGCCC TTTTCAATTCAAAAC TERM 4319 3401276 - 3401261 - R 100 -11.8 -4.72986 | opp_overlap 3401261 TACGGGCAGCAAAAA GGGCGC CGAA GCGCCC TTTTCAATTCAAAAC tufA 3402490 - 3401306 - | elongation factor Tu TERM 4320 3402444 - 3402460 + g 70 -4.4 -4.4715 | gap 1, opp_overlap 3402444 ACGTGGCCGATAGTA CCG-ACG TTAA CGTGCGG TTTTGTACGTTCAAA TERM 4321 3402535 - 3402510 - R 93 -15.5 -2.78935 | opp_overlap 3402506 3402505 ATATTCCTTACTATA GTGCTCTCCCC TTCA GGAGAGAGCAC GGGACTTTGGTATTA fusA 3404675 - 3402561 - | elongation factor G TERM 4322 3404747 - 3404722 - R 82 -11.2 -3.63895 | gap 1, opp_overlap 3404712, overlap 3404712 TTTAAGTAGCCCAAA GCGGGCTGCTT ACTGG AAGC-GCCCGC CTGGTGACTAAAACT rpsG 3405242 - 3404703 - | 30S ribosomal protein S7 rpsL 3405713 - 3405339 - | 30S ribosomal protein S12 TERM 4323 3405783 - 3405761 - R 100 -12.8 -4.7268 | AAACACGTAATAAAA CGTCCTCACA CAA TATGAGGACG CCGAATTTTAGGGCG yheL 3406126 - 3405839 - | tRNA 2-thiouridine synthesizing protein B yheM 3406493 - 3406134 - | hypothetical protein yheN 3406879 - 3406493 - | hypothetical protein yheO 3407601 - 3406879 - | hypothetical protein TERM 4324 3407396 - 3407427 + g 76 -7.4 -4.21194 | gap 1 ATCTTCCGGCCTGTA TGTTCA-CCGTTAGC AAT GCGAATGGCTGAACA TTTTAGATCCTGCAA TERM 4325 3407626 - 3407613 - R 78 -6.7 -4.59226 | opp_overlap 3407623 3407624 ACATGAAAAAAAACA CTCCT TTTC AGGAG CCTGTCGTTAACTTT TERM 4326 3407685 - 3407697 + r 72 -9.1 -3.54919 | opp_overlap 3407685 3407683 3407681 AACTAAATTAATACA GCGGA GGT TCCGC TTTCCAGCACTAATT TERM 4327 3407724 - 3407767 + r 72 -4.7 -4.61482 | gap 2, opp_overlap 3407736, overlap 3407725 3407736 AATTATATCCGGCCT GTAATAAAAAAACCGCCGCCT GGTC AGGCGGCGG--TTCTTAATGC TTATTTTTTAGCAGA TERM 4328 3407725 - 3407770 + r 76 -4.2 -5.0133 | gap 2, opp_overlap 3407736, overlap 3407724 3407736 ATTATATCCGGCCTG TAA-TA-AAAAAACCGCCGCCT GGTC AGGCGGCGGTTCTTAATGCTTA TTTTTTAGCAGAATC TERM 4329 3407757 - 3407736 - R 100 -17.3 -5.7946 | opp_overlap 3407724 3407725 3407736 CCTGTAATAAAAAAA CCGCCGCCT GGTC AGGCGGCGG TTCTTAATGCTTATT TERM 4330 3407736 - 3407757 + r 100 -17.3 -3.79396 | opp_overlap 3407736, overlap 3407724 3407725 CCTGTAATAAAAAAA CCGCCGCCT GGTC AGGCGGCGG TTCTTAATGCTTATT fkpA 3408580 - 3407768 - | FKBP-type peptidyl-prolyl cis-trans isomerase slyX 3408801 - 3409019 + | hypothetical protein TERM 4331 3409020 - 3409058 + T 100 -14.6 -4.29325 | opp_overlap 3409032, overlap 3409032 CCGCCACATTATTGA GGCGTAAAAAAAGCGGGG ATT CCCCGCTTTTTTGTCACC TTTTCGGTATTAGTG TERM 4332 3409046 - 3409032 - T 100 -12.8 -5.42259 | opp_overlap 3409020 3409032 TGAGGCGTAAAAAAA GCGGGG ATT CCCCGC TTTTTTGTCACCTTT TERM 4333 3409032 - 3409046 + T 100 -12.8 -5.28826 | opp_overlap 3409032, overlap 3409020 TGAGGCGTAAAAAAA GCGGGG ATT CCCCGC TTTTTTGTCACCTTT slyD 3409658 - 3409068 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 4334 3409632 - 3409643 + g 72 -5.8 -4.39989 | overlap 3409616 CTGATAGGCCAGGCT GACC ACCA GGTC TTTTGCTACTTTCAT SFV_3355 3409953 - 3409753 - | hypothetical protein kefB 3411675 - 3409963 - | glutathione-regulated potassium-efflux system protein KefB yheR 3412290 - 3411739 - | glutathione-regulated potassium-efflux system ancillary protein KefG TERM 4335 3413718 - 3413694 - g 93 -12.9 -3.6053 | overlap 3413690 3413703 TGGGCGATAAAGTAA CCGAAGAAACG CGC CGCTTCTCCGG TGGGGAAAAAGCCCG TERM 4336 3413745 - 3413729 - g 70 -5 -4.56597 | opp_overlap 3413729, overlap 3413703 TCCGGTGGGGAAAAA GCCCGC CTGGT GCTGGC ATTAATTGTCTGGCA yheS 3412421 - 3414334 + | putative ABC transporter ATP-binding protein TERM 4337 3414487 - 3414500 + GF 70 -4.5 -4.45083 | TGGCAGCGGCTGGAG TTGCC CGAC GGCGA TTTTGTCGATCTCGC TERM 4338 3414768 - 3414786 + GF 73 -10.2 -3.08798 | overlap 3414779 CGAATTTGGTCATGC GCCAACGG CTG CCGTCGGC TATTCGCTCGGCGGT yheT 3414334 - 3415383 + | putative hydrolase TERM 4339 3415488 - 3415464 - gf 79 -8.5 -4.20769 | ACACTTGAACAGAAA GTCGCCGACGT CAA ACGCCAGCTAC AGTGCGGAGAAGCGG yheU 3415350 - 3415568 + | hypothetical protein prkB 3415622 - 3416491 + | phosphoribulokinase yhfA 3416950 - 3416546 - | hypothetical protein TERM 4340 3416896 - 3416884 - G 76 -7.7 -4.25104 | TGCCGTCCATTAAAA TCTGG TGA CCAGA GGCGGATTCGCCCAG TERM 4341 3417362 - 3417337 - g 70 -10.5 -2.76171 | overlap 3417334 ACCCATCCAAGAGCA CGCTTATTCAC CAGG GTGAAAAAGCG GAAACGCTGTACTAC crp 3417252 - 3417884 + | cAMP-regulatory protein TERM 4342 3417896 - 3417920 + F 100 -16.5 -4.86731 | overlap 3417886 TTAATCCCGTCGGAG TGGCGCGTTAC CTG GTAGCGCGCCA TTTTGTTTCCCCCGA yhfK 3417935 - 3420025 + | hypothetical protein argD 3421312 - 3420092 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein pabA 3421961 - 3421398 - | para-aminobenzoate synthase component II fic 3422595 - 3421993 - | cell filamentation protein Fic TERM 4343 3422290 - 3422304 + g 83 -5.6 -5.03994 | overlap 3422292 CTCCAGATCCTGCAT CAGGGC ATT GCCCTC TTTTTCTATATAAGC TERM 4344 3422292 - 3422302 + g 77 -8.2 -4.14422 | overlap 3422290 CCAGATCCTGCATCA GGGC ATT GCCC TCTTTTTCTATATAA yhfG 3422752 - 3422585 - | hypothetical protein TERM 4345 3422847 - 3422826 - R 100 -17.3 -3.46602 | GCCGGGAGAGCAGAA GCGCGGGCA AGAT TGCCCGCGC GAGAAATCATTACGG ppiA 3423438 - 3422857 - | peptidyl-prolyl cis-trans isomerase A (rotamase A) TERM 4346 3423664 - 3423683 + H 73 -2.1 -5.26119 | overlap 3423665 AAAATCGCCCGCTCG CGGCATA TCCCGC TATGCCA TTTTATTTTTGAACG TERM 4347 3423755 - 3423778 + G 72 -8.8 -3.78934 | GGATTAGCTTTCTCT CCTACGCACT GACT GGTGCGTTGG TTATTGTCACCGGGA TERM 4348 3424093 - 3424110 + G 74 -7.7 -4.015 | gap 1, overlap 3424097 ATGTATGAAGGGCGT CAGCGCGG TTC CCGC-CTG TTATTTACTGACTCC TERM 4349 3424302 - 3424292 - g 85 -6.8 -4.73388 | AACGTGCACCAAAAA CGGA TGC TCCG GTAGAGAAAGAAAAG yhfC 3423709 - 3424890 + | hypothetical protein TERM 4350 3424898 - 3424925 + F 93 -10.5 -4.43213 | overlap 3424899 CTCATTAATTGCTAA TGCCGGACGGC ACTATC GTCGTCCGGCC TTTTCCTCTCTTCCC TERM 4351 3424899 - 3424924 + F 86 -14 -3.25205 | overlap 3424898 TCATTAATTGCTAAT GCCGGACGGC ACTATC GTCGTCCGGC CTTTTCCTCTCTTCC TERM 4352 3426964 - 3426941 - g 70 -5.2 -4.3467 | gap 1, opp_overlap 3426949 3426952, overlap 3426927 3426942 ATCTCTACACCAAAA TCACC-GGCTC CCA GCGCCTGGCGA TGTTTGGCGCACAGA nirB 3425152 - 3427695 + | nitrite reductase (NAD(P)H) subunit TERM 4353 3427903 - 3427918 + G 70 -6.1 -4.28774 | opp_overlap 3427914 TGTGGGTCGCCAGCC CGCTG AAAAAA CAGCG TTTTCGCTTAAGTGA TERM 4354 3427927 - 3427914 - g 71 -2.3 -5.00884 | opp_overlap 3427903 3427922 AGCCCGCTGAAAAAA CAGCG TTTT CGCTT AAGTGATGGCTTGTG nirD 3427692 - 3428018 + | nitrite reductase small subunit TERM 4355 3428027 - 3428047 + F 89 -8.9 -4.68994 | overlap 3428028 CGGTTAATGTTTTAA CGGGAGGCG CAA TGCCTCCCC TTTTTGCATGGTCCT TERM 4356 3428028 - 3428046 + F 85 -12.4 -3.40674 | overlap 3428027 GGTTAATGTTTTAAC GGGAGGCG CAA TGCCTCCC CTTTTTGCATGGTCC TERM 4357 3428057 - 3428090 + F 85 -6.1 -5.16472 | gap 1, overlap 3428058 CTCCCCTTTTTGCAT GGTCCTGTAATG-ACC TTC GGTATATTGCAGGACA TTTTTTAAACTTTTT TERM 4358 3428058 - 3428089 + F 79 -9.6 -3.67443 | gap 1, overlap 3428057 TCCCCTTTTTGCATG GTCCTGTAATG-ACC TTC GGTATATTGCAGGAC ATTTTTTAAACTTTT TERM 4359 3428597 - 3428580 - g 74 -7.7 -4.07568 | opp_overlap 3428580 TCGCGCTGGCTAAAA CCACTGC ACCG GCAATGG TACTGTTCTTCAAAG nirC 3428144 - 3428950 + | nitrite transporter NirC TERM 4360 3429749 - 3429764 + G 82 -9 -4.25104 | ATGAATCTGGTACGC CGCGAT GCTG ATCGCG TTTTCGTCGGCAAAC TERM 4361 3430234 - 3430198 - g 81 -9.3 -4.11484 | opp_overlap 3430210, overlap 3430203 GGCAATTGTCGAAAA CGGAACGGCAGTCACGC AGC GCGTGATTGACGGTACG CTCACGCAACTCGGT TERM 4362 3430229 - 3430203 - g 76 -10.8 -3.36823 | opp_overlap 3430210, overlap 3430198 TTGTCGAAAACGGAA CGGCAGTCACGC AGC GCGTGATTGACG GTACGCTCACGCAAC cysG 3428969 - 3430342 + | siroheme synthase TERM 4363 3430352 - 3430369 + F 86 -11.3 -3.74762 | CATTAATTTAACCCG GGCCAGA GAAT TCTGGCC TTCTTAATGACTCTT TERM 4364 3430445 - 3430407 - f 76 -4 -4.9448 | opp_overlap 3430409, overlap 3430409 ATTCAGCAAATAAAA CATAACCCCTTAATAAAT ATT ATCTGCTAATGGGTTATA TTCACCGTTACAGCG yhfL 3430589 - 3430756 + | hypothetical protein TERM 4365 3430796 - 3430823 + F 93 -10.6 -4.65722 | gap 1, overlap 3430798 CCGGTTTAATTGCCC GACGCCCTCTGGA TTT TCC-GAGGGCGTA TTTGTTTCTATGTCC TERM 4366 3430798 - 3430821 + F 95 -13.2 -3.92887 | gap 1, overlap 3430796 GGTTTAATTGCCCGA CGCCCTCTGGA TTT TCC-GAGGGCG TATTTGTTTCTATGT TERM 4367 3433027 - 3433000 - g 86 -6.3 -5.06816 | gap 1, opp_overlap 3433018 ACCTGGGAAGAAAAA GGCC-GCCAGCT TGGTG AACTGGCCAGCC AGTGGCCGATGATTT frlB 3432388 - 3433431 + | fructoselysine-6-P-deglycase TERM 4368 3433439 - 3433460 + F 90 -12.9 -3.53343 | opp_overlap 3433433, overlap 3433440 AATATTAATCCCTCT CCCGGCCCG GCAA CGGGCCGGA TTTACGCAAGGAGTT TERM 4369 3433440 - 3433459 + F 95 -16.4 -2.71791 | opp_overlap 3433433, overlap 3433439 ATATTAATCCCTCTC CCGGCCCG GCAA CGGGCCGG ATTTACGCAAGGAGT TERM 4370 3433503 - 3433488 - g 76 -7.6 -4.26903 | GTTACCCGATGAAAA CAGGTA TGTT TACCTG CGGCCACCAGCGGCT yhfP 3433481 - 3434311 + | fructoselysine 3-epimerase yhfQ 3434308 - 3435093 + | fructoselysine 6-kinase TERM 4371 3435095 - 3435132 + F 73 -9.9 -3.33696 | opp_overlap 3435100, overlap 3435097 3435100 ACGGTGCCTGGTAGG TATAACGTTGGCGTGAG CATC TTCACGCCAACGTGCTG TTACTTGCCGGAAAA TERM 4372 3435097 - 3435130 + F 74 -10.3 -3.23853 | opp_overlap 3435100, overlap 3435095 3435100 GGTGCCTGGTAGGTA TAACGTTGGCGTGAG CATC TTCACGCCAACGTGC TGTTACTTGCCGGAA TERM 4373 3435127 - 3435100 - f 100 -15.7 -3.35679 | opp_overlap 3435097 3435095 3435100 GCCTGGTAGGTATAA CGTTGGCGTGA GCATCT TCACGCCAACG TGCTGTTACTTGCCG TERM 4374 3435100 - 3435127 + F 100 -16.4 -2.80699 | opp_overlap 3435100, overlap 3435097 3435095 GCCTGGTAGGTATAA CGTTGGCGTGAG CATC TTCACGCCAACG TGCTGTTACTTGCCG yhfR 3435127 - 3435924 + | DNA-binding transcriptional regulator FrlR TERM 4375 3435936 - 3435979 + T 100 -14.7 -4.18018 | gap 1, opp_overlap 3435921 3435926 3435925 3435940 3435942, overlap 3435937 3435941 TTAACCGTAGGCCGG ATAAGATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCA-CTGAA TTTTACATCCCGCAC TERM 4376 3435937 - 3435978 + T 100 -18.2 -3.10597 | gap 1, opp_overlap 3435921 3435926 3435925 3435940 3435942, overlap 3435936 3435941 TAACCGTAGGCCGGA TAAGATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCA-CTGA ATTTTACATCCCGCA TERM 4377 3435975 - 3435940 - T 100 -19.9 -3.30124 | gap 1, opp_overlap 3435937 3435936 3435941, overlap 3435926 3435925 3435942 CCGTAGGCCGGATAA GATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCA-C TGAATTTTACATCCC TERM 4378 3435941 - 3435975 + T 100 -20.1 -2.76404 | opp_overlap 3435926 3435925 3435940 3435942, overlap 3435937 3435936 CGTAGGCCGGATAAG ATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCAC TGAATTTTACATCCC TERM 4379 3435974 - 3435942 - T 100 -23.6 -3.21924 | opp_overlap 3435941 3435937 3435936, overlap 3435926 3435925 3435940 GTAGGCCGGATAAGA TGCGCCAGCATCGC ATCCG GCGATGCTGGCGCA CTGAATTTTACATCC yhfS 3437169 - 3436084 - | hypothetical protein yhfT 3438485 - 3437181 - | putative transport system permease protein yhfU 3438889 - 3438497 - | hypothetical protein yhfV 3439739 - 3438861 - | putative hydrolase yhfW 3440962 - 3439736 - | putative mutase yhfX 3442126 - 3440963 - | hypothetical protein TERM 4380 3442091 - 3442105 + g 76 -9.2 -3.72984 | opp_overlap 3442090, overlap 3442103 TGCGGCGGAAATCAG CGCCGG GTT CTGGCG TTTCAATGCTTCTAC TERM 4381 3442150 - 3442164 + r 82 -2.9 -5.54264 | opp_overlap 3442159, overlap 3442154 3442159 CTCGTTTCTGTTCCT TGAAT TAAAT ATTCA TTTTTTTGAATATTT yhfY 3442614 - 3442210 - | hypothetical protein yhfZ 3443437 - 3442589 - | hypothetical protein TERM 4382 3443634 - 3443621 - R 100 -9.5 -5.70829 | opp_overlap 3443621 AAGAGGATAAAAAAA CCGGG TTTC CCCGG TTTCAGAGTGATGAC TERM 4383 3443621 - 3443634 + r 75 -9.5 -3.58343 | opp_overlap 3443621 AAGAGGATAAAAAAA CCGGG TTTC CCCGG TTTCAGAGTGATGAC trpS 3444768 - 3443764 - | tryptophanyl-tRNA synthetase TERM 4384 3443860 - 3443907 + g 95 -15.9 -3.06183 | gap 1, overlap 3443842 3443869 GTCTTTCATCACCTG TTGCAGGAAGGCT-TCATCGTT GCGGA AACGGTGATAGCGTTCCTGCAA TTCAGTCAGCATACC gph 3445519 - 3444761 - | phosphoglycolate phosphatase rpe 3446189 - 3445512 - | ribulose-phosphate 3-epimerase TERM 4385 3446194 - 3446206 + r 78 -6.3 -4.61482 | TACTGTTTCATCCGC TTCTC CTT GAGAA TTATTTTTTCGCGGG dam 3447043 - 3446207 - | DNA adenine methylase TERM 4386 3446603 - 3446623 + g 79 -2.5 -5.24129 | AGCGAAGTGATACAA CTCTGCTTC CGG GAAATAGGG TTTTTTGTAGCGGCC TERM 4387 3446734 - 3446714 - G 82 -3.1 -5.19879 | overlap 3446716 3446719 GTTCAAATATAAAAA CAGTACCGC CCG ACGGAACGG ATCCTGGCTTTTGTT TERM 4388 3446927 - 3446906 - G 100 -13.1 -4.60073 | overlap 3446921 GATATAACGAGAAAA GTCGGTGTT GAGA AACACCGAC CCGGCACCTACAAAA damX 3448436 - 3447150 - | hypothetical protein TERM 4389 3447794 - 3447807 + g 75 -6.7 -4.431 | TGACCGCCACATTGT TCAGC TGTT GCTGA TTTTGTGGCTGGGTC TERM 4390 3448512 - 3448494 - R 77 -11 -3.15621 | opp_overlap 3448491, overlap 3448492 AACCTGAAGCTAATA GACCGCTT GAT AAGCGGCC TGACCTTTCTTGTTG aroB 3449616 - 3448528 - | 3-dehydroquinate synthase aroK 3450395 - 3449673 - | shikimate kinase I TERM 4391 3449982 - 3450000 + g 72 -4.5 -4.64676 | AATACCCTGTTTCTC GGTCAAC TCATT GATGACC TTTTCTTCGCGATCG TERM 4392 3450258 - 3450232 - G 83 -10 -4.05446 | TTCGTTAATGATAAA CCCGCTTCGCTC AGA GAGCGCCGCAGG ACATGAACTGAAACC TERM 4393 3450453 - 3450437 - R 83 -6.5 -5.06451 | GATTAGCGTAAAAAA GACAGCA AAA TGCCGCC TGAATGATAAATCAT hofQ 3451755 - 3450595 - | outer membrane porin HofQ TERM 4394 3450761 - 3450747 - G 75 -5.6 -4.59773 | TTTTACGGGTAAAAA TGCCGC CCA GCGCCA ACGTTTCTCCGCTTT TERM 4395 3451336 - 3451383 + g 72 -7.8 -3.87075 | gap 1 TACCCACTGTTCAAG CGCGCTTAACGCCGTTTTGTTAT CTC GTAGCAAAA-GGCGATTGGTGCG TTTATCGACGGTCAT yrfA 3452149 - 3451745 - | hypothetical protein yrfB 3452579 - 3452139 - | hypothetical protein yrfC 3453102 - 3452563 - | hypothetical protein yrfD 3453881 - 3453102 - | hypothetical protein TERM 4396 3453901 - 3453917 + H 79 -12.3 -2.92091 | ATGATCTCCTTATCA CCCGTCA CTC TGACGGG TATATCAATGCGTCT mrcA 3454001 - 3456553 + | peptidoglycan synthetase TERM 4397 3456561 - 3456574 + T 87 -9.5 -4.28774 | opp_overlap 3456561, overlap 3456570 TGTTCTGATTAAAAA GGCGC TTCG GCGCC TTTTCAGTTGGCTGA TERM 4398 3456574 - 3456561 - T 93 -9.5 -4.72272 | opp_overlap 3456561 3456570 TGTTCTGATTAAAAA GGCGC TTCG GCGCC TTTTCAGTTGGCTGA nudE 3457278 - 3456718 - | ADP-ribose diphosphatase NudE yrfF 3457598 - 3459733 + | putative dehydrogenase TERM 4399 3459775 - 3459734 - f 79 -9.5 -3.67775 | gap 1, opp_overlap 3459738, overlap 3459737 AGCCTTATCGAATAA CACGTTTGCGCGGCAGGTTA TGC TACCCTGTCGCGCAAAT-TG CTTCACTCTGGAGAT TERM 4400 3459773 - 3459737 - f 78 -12.3 -2.64872 | opp_overlap 3459738, overlap 3459734 CTTATCGAATAACAC GTTTGCGCGGCAGGTTA TGC TACCCTGTCGCGCAAAT TGCTTCACTCTGGAG TERM 4401 3459738 - 3459772 + F 100 -18 -3.39142 | opp_overlap 3459737 3459734 TTATCGAATAACACG TTTGCGCGGCAGGTTA TGC TACCCTGTCGCGCAAA TTGCTTCACTCTGGA yrfG 3459798 - 3460499 + | putative phosphatase TERM 4402 3460522 - 3460532 + G 75 -4.6 -4.82901 | CTGGATAAATGGCTA TGGG CTG CCCG TTTTTATAAAACCCG yrfH 3460477 - 3460878 + | ribosome-associated heat shock protein Hsp15 TERM 4403 3461230 - 3461205 - g 93 -10.4 -4.44974 | opp_overlap 3461204 CGAAATTCCAGAAAA TGCCGACCTG AAAACG CTGGTCGGCA ATGGTTACGTGGTGA hslO 3460903 - 3461772 + | Hsp33-like chaperonin TERM 4404 3461790 - 3461813 + T 100 -16.8 -4.15106 | opp_overlap 3461785 3461801 TCATTAATGAGTATG TCCGGCAGAG AGGG CTCTGCCGGA TTTTACGACTTAATG yhgE 3463601 - 3461916 - | putative transport protein TERM 4405 3463506 - 3463494 - G 70 -5.5 -4.34771 | overlap 3463495 TAAAACGGATGAAAA CGCGA CGG TCGCA GGCACGCCATAAACA TERM 4406 3464352 - 3464338 - g 73 -11.4 -2.77043 | opp_overlap 3464336, overlap 3464337 GGCAGCATCTGAAAG GCCTGG TGA CCAGGC AGCTTTCCGGCAAAC pckA 3464019 - 3465641 + | phosphoenolpyruvate carboxykinase TERM 4407 3465711 - 3465690 - T 100 -13.7 -4.65153 | opp_overlap 3465690 TTATAGAAAGCAAAA CGGGAGGCA CCTT CGCCTCCCG TTTATTTACCCTTCT TERM 4408 3465690 - 3465711 + T 100 -13 -4.46835 | opp_overlap 3465690 TTATAGAAAGCAAAA CGGGAGGC ACCTTC GCCTCCCG TTTATTTACCCTTCT envZ 3467069 - 3465717 - | osmolarity sensor protein TERM 4409 3467014 - 3466982 - G 73 -12 -2.73443 | overlap 3466981 GCACCACCAGATAAG TCGTCACCAGGCTG GCGAA CAGCAAGGTGACGA TGAGCAATAACGTAC ompR 3467785 - 3467066 - | osmolarity response regulator TERM 4410 3467305 - 3467291 - G 77 -10 -3.62096 | opp_overlap 3467297 3467302, overlap 3467295 CTTCAGTACCGCAAA CTCACC GCT GGTGAG CGGCATCGGCTCATC greB 3468013 - 3468489 + | transcription elongation factor GreB TERM 4411 3470117 - 3470105 - g 74 -10.5 -3.14132 | CTGTTCCGCTATTAA CCCGC GTG GCGGG CCTGACGCGCATGAT TERM 4412 3470479 - 3470458 - g 84 -7.9 -4.62904 | gap 1, opp_overlap 3470457 3470456, overlap 3470459 AAAGAGCTGGAAAAA CCGGGTCGCG ATC CGCGTCC-GG AATTTAAAACCGCTC yhgF 3468586 - 3470907 + | hypothetical protein TERM 4413 3471009 - 3470987 - f 100 -17.8 -4.52589 | opp_overlap 3470987 TTGCCTGACATAAAA GTGCCGGAGA ATA TCTCCGGCAC TTTTATTCCACAGCC TERM 4414 3470987 - 3471009 + F 100 -17.8 -4.63218 | opp_overlap 3470987 TTGCCTGACATAAAA GTGCCGGAGA ATA TCTCCGGCAC TTTTATTCCACAGCC feoA 3471345 - 3471572 + | ferrous iron transport protein A TERM 4415 3472436 - 3472447 + G 74 -5.8 -4.53036 | TGCTCAACCGTTTCC TCGG TCTG CCGA TTTTCCTCTTTGTGA TERM 4416 3473219 - 3473201 - g 77 -8.2 -4.11216 | overlap 3473214 CGTTGAGCGGGAAAA TCGTCGAT AAC ATCAACGA CTCGGCGCTGGCTTC feoB 3471589 - 3473910 + | ferrous iron transport protein B yhgG 3473901 - 3474146 + | hypothetical protein TERM 4417 3474173 - 3474197 + F 100 -12.2 -5.08824 | gap 1, opp_overlap 3474173 CGCCTGTTTTGAAAA GCCCGGTATGC GTTT GCAT-CCGGGC TTTTTTGCGTGCGGC TERM 4418 3474197 - 3474173 - f 95 -12.2 -4.07568 | gap 1, opp_overlap 3474173 CGCCTGTTTTGAAAA GCCCGGTATGC GTTT GCAT-CCGGGC TTTTTTGCGTGCGGC TERM 4419 3474237 - 3474225 - f 80 -6.3 -4.82901 | GGCTTTCCATAAAAA TGCAA TTC TTGCA GCGCAACGTAAGTTC TERM 4420 3474376 - 3474360 - g 71 -2.9 -4.77036 | overlap 3474363 CGCCATGAGTAAAAA GCAGAGT TCC ACCCCAC ATGATGCGCTGTTCA yhgA 3474349 - 3475236 + | hypothetical protein SFV_3417 3475312 - 3475677 + | insertion sequence 2 OrfA protein SFV_3418 3475701 - 3476540 + | IS2 ORF2 SFV_3419 3476899 - 3477264 + | growth inhibitor, PemK-like, autoregulated bioH 3477972 - 3477265 - | carboxylesterase BioH TERM 4421 3477356 - 3477343 - G 70 -5.2 -4.44046 | opp_overlap 3477343 CGGATGCGAAATAAA CGGC GCATGG GCCG CTTTGGCGAAGATAT TERM 4422 3477914 - 3477889 - G 72 -8.9 -3.75665 | TGACAGCGCACCAAA TCCCCGGCTAC GCCC GAAGCCGGGCA GGTCAACAAGGTGCA yhgH 3478043 - 3478774 + | gluconate periplasmic binding protein yhgI 3478833 - 3479408 + | putative DNA uptake protein gntT 3479769 - 3481085 + | high-affinity transport permease for gluconate TERM 4423 3481122 - 3481091 - T 77 -11 -3.23393 | gap 1, overlap 3481089 3481092 GGTGATTTGATAACA CTGACTGCCGGATGC ATC GCATCCGACA-TCAA CCGCACTCTACTTCT TERM 4424 3481121 - 3481092 - T 78 -12.3 -2.53822 | gap 1, overlap 3481091 3481089 GTGATTTGATAACAC TGACTGCCGGATGC ATC GCATCCGACA-TCA ACCGCACTCTACTTC malQ 3483214 - 3481130 - | 4-alpha-glucanotransferase TERM 4425 3481229 - 3481241 + g 74 -3.3 -4.93296 | opp_overlap 3481208 3481207 3481205 3481229, overlap 3481206 AAGCGTTGCGGAAAG CTTGC GTC GCCAG TTTTTATACTGGTAA TERM 4426 3482167 - 3482153 - G 74 -10 -3.56092 | overlap 3482154 CCAGCAGGCGGCAAA CTGGCT GTA AGCCAG CCACTGCAACCAGAG TERM 4427 3482347 - 3482324 - G 72 -8.8 -3.74872 | overlap 3482339 ATGTAGCGCATCAAA GGCAGCCTGC CAGA ACAGGCTGTC GCCCTGCTCTGCAAC TERM 4428 3483059 - 3483085 + g 85 -13.1 -3.18582 | gap 1, overlap 3483056 3483055 3483076 3483077 GACATTCGGGACTGG CGTTACCGCCAC TTTC GTGGCGGTA-CG TTGATGCATCGCGTC malP 3485617 - 3483224 - | maltodextrin phosphorylase TERM 4429 3484134 - 3484150 + g 70 -3.7 -4.62872 | TATTGCTGACGGAAT TTCGC ATCATCA GCGAA TTTTTCCAGATTGAT TERM 4430 3484223 - 3484240 + g 79 -9.9 -3.72576 | ATCCAACAGAGCCGC CAGTGCA GGGT TGCACTG TTTGATCCAGCGACG TERM 4431 3484801 - 3484817 + g 72 -5.1 -4.57073 | CACACTGGAAGTATT GCTGC ATCAGGC GCAGC TTTTTACCGGCAGTA TERM 4432 3486040 - 3486057 + H 72 -6.3 -4.21676 | gap 1, overlap 3486040 3486042 AGGGAAACCAGTATT C-ACGCTG GAT CAGCGTCG TTTTAGGTGAGTTGT TERM 4433 3486538 - 3486526 - g 78 -5.5 -4.75372 | overlap 3486527 ACGATGGAGCAAAAA CGGCA ATA TGCCA GCCTGACGTCACTCT malT 3486229 - 3488934 + | transcriptional regulator MalT yhgKJ 3489879 - 3488977 - | RNA 3'-terminal-phosphate cyclase TERM 4434 3489636 - 3489596 - G 81 -8.8 -4.37092 | opp_overlap 3489596 3489597, overlap 3489597 ACCCGGCGGATAAAA TCCGCAGGCGGCGCCGAC GGGTT ATCGGTGCCGCGCACGGT GCCAGGCCGGAAGAC TERM 4435 3489635 - 3489597 - G 81 -12.3 -3.21934 | opp_overlap 3489597 3489596, overlap 3489596 CCCGGCGGATAAAAT CCGCAGGCGGCGCCGAC GGGTT ATCGGTGCCGCGCACGG TGCCAGGCCGGAAGA rtcB 3491109 - 3489883 - | hypothetical protein TERM 4436 3490778 - 3490796 + g 77 -10.2 -3.68619 | opp_overlap 3490766 CAACGCCCGGTAGTA CGCCCGTG CGG CACGGCCG TTTCAATCGCTTGAC TERM 4437 3491012 - 3490999 - G 77 -5.9 -4.65263 | opp_overlap 3490999 3490997 ATGTTTGAAAATAAA CGGCA TCTT CGCCG TATTAATAAGTTGCT TERM 4438 3491749 - 3491733 - g 71 -2.1 -5.00884 | overlap 3491736 ACTCCGCGCAAAAAA GAACAGC CGC GCGGCCC AGGTGAAGTGACGAT TERM 4439 3492762 - 3492777 + G 79 -4.6 -4.93696 | GCAAAGTCGCTTTCT GCTGCC GGAC GACAGC TTTTTGATGTTTCGC rtcR 3491298 - 3492896 + | putative 2-component regulator glpR 3493636 - 3492878 - | DNA-binding transcriptional repressor GlpR TERM 4440 3493390 - 3493402 + g 90 -6.9 -5.12068 | GCTCCGCCACTTTGC GGGCG ATG CGCTC TTTTTCTTCGGTCTG glpG 3494426 - 3493653 - | intramembrane serine protease GlpG TERM 4441 3494337 - 3494296 - G 74 -10.1 -3.48276 | opp_overlap 3494285 3494296, overlap 3494297 3494323 CTGGCCGCCAGATAA CGCGGATCTGCCGGGTTTT CGAG AAAACGCGCCAGCTCCGCC CGCACGCGCTCGGCC TERM 4442 3494336 - 3494297 - G 84 -13.6 -2.68823 | opp_overlap 3494285 3494296, overlap 3494296 3494323 TGGCCGCCAGATAAC GCGGATCTGCCGGGTTTT CGAG AAAACGCGCCAGCTCCGC CCGCACGCGCTCGGC TERM 4443 3494343 - 3494323 - G 75 -6.7 -4.36914 | overlap 3494297 3494296 GGGTTTTCGAGAAAA CGCGCCAGC TCC GCCCGCACG CGCTCGGCCTGGGAC glpE 3494854 - 3494528 - | thiosulfate sulfurtransferase TERM 4444 3494994 - 3495009 + H 71 -7.6 -3.95219 | opp_overlap 3494994 GATTCTTTGCTAATA TGTTCG ATAA CGAACA TTTATGAGCTTTAAC glpD 3495044 - 3496549 + | glycerol-3-phosphate dehydrogenase yzgL 3497036 - 3496755 - | hypothetical protein TERM 4445 3497145 - 3497174 + r 89 -9.3 -4.59109 | overlap 3497137 3497147 GGACCCTTTGGCCTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 4446 3497147 - 3497172 + r 100 -16.3 -3.90762 | overlap 3497137 3497145 ACCCTTTGGCCTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_3435 3498166 - 3497156 - | IS4 orf SFV_3436 3498503 - 3498180 - | IS4 orf TERM 4447 3498493 - 3498518 + g 73 -9.1 -3.61398 | opp_overlap 3498493 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 4448 3498518 - 3498493 - G 100 -9.8 -5.61596 | opp_overlap 3498493 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC glgP 3501050 - 3498603 - | glycogen phosphorylase TERM 4449 3498842 - 3498821 - G 72 -10.1 -3.38316 | opp_overlap 3498820 TGATCAGCGAATCAA CCAGATCGC GATA GCGACCCGG ATCTTCCGGACTGAA TERM 4450 3500668 - 3500700 + g 88 -8.9 -4.72497 | overlap 3500669 3500671 AAGCAAGCCGCCAGA CGTCCCAGGCCACCG TTA CCGAGGCCTGGGTCA TTTTCTTCATCAATC TERM 4451 3500669 - 3500699 + g 86 -12.4 -3.42775 | overlap 3500668 3500671 AGCAAGCCGCCAGAC GTCCCAGGCCACCG TTA CCGAGGCCTGGGTC ATTTTCTTCATCAAT TERM 4452 3500671 - 3500697 + g 95 -13.6 -3.27725 | overlap 3500669 3500668 CAAGCCGCCAGACGT CCCAGGCCACCG TTA CCGAGGCCTGGG TCATTTTCTTCATCA glgA 3502502 - 3501069 - | glycogen synthase TERM 4453 3501736 - 3501748 + g 82 -7.7 -4.46212 | opp_overlap 3501729 AACAGTAAGTCCGTC TCTGG ACT CCAGA TTTTCTCGTCCACGC glgC 3503797 - 3502502 - | glucose-1-phosphate adenylyltransferase TERM 4454 3503306 - 3503320 + g 84 -7.8 -4.60487 | opp_overlap 3503305 3503306 TGGCATACAAGCAAC GGTGCA ACG TGCGCC TTTTTCGACGTGATC glgX 3505788 - 3503815 - | glycogen debranching enzyme TERM 4455 3505421 - 3505392 - G 70 -10 -3.2056 | opp_overlap 3505408 AGTCATAGTGATCAA CCACCACTACGC ATTTCG GCGCAATGGCGG CGTTGTCGCGATAGT glgB 3507971 - 3505785 - | glycogen branching enzyme TERM 4456 3506362 - 3506372 + g 83 -5.4 -5.0538 | TCGCCCGGCATGCGG TCGA GAA TCGA TTTTTTACCGTGGAC TERM 4457 3507248 - 3507266 + g 91 -7.4 -5.09173 | CATAAATAGAGATTG GCGCATCA AAC TGATTCGC TTTTTTGCGCTCTTC TERM 4458 3508225 - 3508208 - R 71 -9.8 -3.15996 | opp_overlap 3508206 3508205, overlap 3508206 TATTACGCACTAACA GGGGCG GCATCG CGCCCC AGATTTAATGAATAA asd 3509347 - 3508244 - | aspartate-semialdehyde dehydrogenase yhgN 3509581 - 3510132 + | dITP- and XTP- hydrolyzing protein TERM 4459 3510180 - 3510155 - T 88 -12.6 -3.63922 | overlap 3510153 AGTTTTTCGAAAAGA GCCCGGTAGC GTCACA ACTACCGGGC GAACAAACTTAACTC TERM 4460 3511503 - 3511475 - T 71 -3.9 -4.77036 | overlap 3511477 3511478 CTTCATGACTAAAAA CAGCAGCAG TAAAACAGACC CTACTGCTG TTAAAACAAGCGTTA gntK 3512059 - 3511532 - | gluconate kinase 1 TERM 4461 3512117 - 3512091 - R 72 -3 -5.01845 | opp_overlap 3512091 TACAAGAATTAAAAA TGTTACGGGTAA CTG TTATCGGCAACA TTGTCCAGCCGGACA gntR 3513136 - 3512198 - | regulator of gluconate (gnt) operon TERM 4462 3512922 - 3512934 + g 76 -9.1 -3.75629 | opp_overlap 3512917 GTCTGATAACCGTGC GCGTC GGT GACGC TTTCGATTCCGCGTA TERM 4463 3513367 - 3513336 - R 100 -13.6 -4.10429 | overlap 3513326 AACGACGCGGCAAAA CCCCGGAAGCGTGC ATCA GCACGCGACCGGAG CGAGCGAGGAAGCCT yhhW 3514112 - 3513417 - | hypothetical protein yhhX 3515272 - 3514235 - | putative dehydrogenase TERM 4464 3515414 - 3515398 - H 100 -9.4 -6.21477 | AAGATCAAAAAAAAA GCCAGC ACCCG GCTGGC TAAGTAATACTGGAA yhhY 3515527 - 3516093 + | putative acetyltransferase YhhY ggt 3517894 - 3516152 - | gamma-glutamyltranspeptidase periplasmic precursor TERM 4465 3516742 - 3516781 + g 82 -3.4 -5.22312 | gap 1 GATTACTCTCATAAG GCGCAAGCTTGCCAGGGCG AAT CTCACTGGACGGCTT-CGC TTTTTTGATATCAAT TERM 4466 3517400 - 3517412 + g 71 -9.1 -3.51934 | overlap 3517398 CACGACTTTGTTCAG CGGCA TGG TGCCG TATTTATCCAGCGCC TERM 4467 3517868 - 3517885 + g 90 -9.1 -4.51699 | opp_overlap 3517852 AGCAGCAATGGCCAC CCGGCGT AAAA ACGTCGG TTTTATCATCGTTAT TERM 4468 3518036 - 3518049 + G 72 -8.1 -3.95219 | overlap 3518046 GACTTCTGATTCTTA CGGCA CTCC TGCCG TTTGTCGGCTTTGCA TERM 4469 3518421 - 3518388 - g 81 -9.5 -4.0162 | GCCGGAGAGGAGAAA CGGCGACATGCTGAA TCAG CCCAGCACGCCGCAG CCTGACATTCCGTTG yhhA 3518014 - 3518454 + | hypothetical protein ugpQ 3519184 - 3518441 - | cytoplasmic glycerophosphodiester phosphodiesterase TERM 4470 3518502 - 3518533 + g 78 -8.6 -4.17556 | gap 1, opp_overlap 3518500 CAGATGCAATCCACG CCCCAGCGCAGCAAC TCT GCCGC-GTGCTGGGG TTTATTGACGGTATA ugpE 3521018 - 3520173 - | glycerol-3-phosphate transporter membrane protein ugpA 3521902 - 3521015 - | glycerol-3-phosphate transporter permease ugpB 3523316 - 3522000 - | glycerol-3-phosphate transporter periplasmic binding protein TERM 4471 3522398 - 3522411 + g 72 -5.9 -4.38154 | overlap 3522409 CCCACAGGCTGGCTC CGCCG ATAA TGGCG TTTTGTGGCGCATCT TERM 4472 3523344 - 3523357 + r 70 -5.2 -4.46212 | opp_overlap 3523342 3523354, overlap 3523343 TTGTTGTACCGAATG CGCG AATTCA CGCG TTTTATGCTCGCGGG TERM 4473 3523679 - 3523694 + r 70 -9 -3.35996 | opp_overlap 3523679, overlap 3523671 3523673 GTCACCTGTCTCAAA GGAGTC TTTT GACTCC TTATCAATCAACGTG TERM 4474 3523694 - 3523679 - R 72 -9 -3.53811 | opp_overlap 3523671 3523673 3523679 GTCACCTGTCTCAAA GGAGTC TTTT GACTCC TTATCAATCAACGTG livF 3524426 - 3523713 - | leucine/isoleucine/valine transporter ATP-binding subunit TERM 4475 3523975 - 3523957 - G 70 -4.5 -4.51994 | TCAAGTAACAACAAA CGCGGAT TGCTC ATCAGCG CGCGACCAATCGCCA livG 3525195 - 3524428 - | leucine/isoleucine/valine transporter ATP-binding subunit livM 3526400 - 3525192 - | leucine/isoleucine/valine transporter permease subunit livH 3527359 - 3526466 - | branched-chain amino acid transporter permease subunit LivH TERM 4476 3527273 - 3527257 - G 83 -10.1 -4.1347 | opp_overlap 3527257 TGCCAATCATATAAA CCTCGCC GTG GGCGAAG TTGATCATGCCGATA TERM 4477 3527432 - 3527410 - R 82 -11.2 -3.55622 | overlap 3527411 GGTAACCTTTCTAAA CCCGCCCGCA TTT TACGGGCGGT GGGATGATCACTTGG TERM 4478 3527431 - 3527411 - R 86 -14.7 -2.73159 | overlap 3527410 GTAACCTTTCTAAAC CCGCCCGCA TTT TACGGGCGG TGGGATGATCACTTG livK 3528555 - 3527440 - | leucine-specific binding protein precursor TERM 4479 3528917 - 3528907 - H 95 -3.2 -5.88476 | AAAAGAAATAAAAAA GAGA AAG CCTC CGATTAAATTATTTC yhhK 3528973 - 3529356 + | hypothetical protein livJ 3530658 - 3529555 - | Leu/Ile/Val-binding protein precursor TERM 4480 3530386 - 3530397 + g 70 -5.8 -4.15044 | CACATATTTAATGCC GTCG TTAA CGAC TTTGTTCGCCACCGC TERM 4481 3530907 - 3530888 - R 100 -7.8 -5.75538 | opp_overlap 3530888 CCCAAAAAACAAAAA CCCCGGAC TCTC ATCCAGGG TTCTCTGCTTAATAG rpoH 3531783 - 3530929 - | RNA polymerase factor sigma-32 ftsX 3533087 - 3532029 - | cell division protein FtsX TERM 4482 3532713 - 3532735 + g 77 -3.3 -5.03314 | gap 1 CTGTGCCACCACGCC CGCAGCGGCG TCAT CGTC-CAGCG TTTTTTGCAAGTAAA ftsE 3533748 - 3533080 - | cell division protein FtsE TERM 4483 3535348 - 3535335 - g 87 -4.5 -5.1861 | TTTATCATGAAAAAA CCGAA TCAT TCCGG CAGCGGCCAAATCCG yhhF 3535326 - 3535922 + | 16S rRNA m(2)G966-methyltransferase TERM 4484 3536103 - 3536134 + G 80 -11.7 -3.39018 | opp_overlap 3536099, overlap 3536100 CCCGCAGATGACCAC CGCCGAAAAGG TGCGGATTTT CCTTTTCGGCG TGTTTGAACTGCTGG yhhL 3535912 - 3536181 + | hypothetical protein TERM 4485 3536205 - 3536179 - T 75 -3.1 -5.22039 | overlap 3536166 TTTAAAGTTAAAAAA TAACCTTATTG TTCGC CAACAAAGCTA ACAAAGCGCGTTCCT yhhM 3536543 - 3536184 - | putative receptor TERM 4486 3536915 - 3536929 + G 71 -3.4 -4.8048 | overlap 3536916 3536917 CGTCAACGTCTGATG TACGCC ATC GGCGCG TTTTTCCTCTCGCAC yhhN 3536684 - 3537310 + | putative enzyme TERM 4487 3537321 - 3537340 + F 80 -12.2 -3.01984 | opp_overlap 3537317 3537316 TCTGATAAAACTTGA CTCTGGAG TCGA CTCCAGAG TGTATCCTTCGGTTA TERM 4488 3538117 - 3538096 - g 83 -10.1 -4.13654 | CGCTGAAACCAGAAA CCGCCACGC GCCT GCGTAACGG TGAGCGGGAAGAGGT zntA 3537384 - 3539582 + | zinc/cadmium/mercury/lead-transporting ATPase TERM 4489 3539614 - 3539589 - T 74 -8.3 -3.83724 | AGGAGATAAGGCAAA CCGATCGCA ACATTGAG CGCGATCGG TCCCCTCGCCCCTCT yhhP 3539929 - 3539684 - | cell developmental protein SirA TERM 4490 3539784 - 3539768 - G 70 -4.3 -4.52803 | CATAAAGGTACAAAA CCCAGGA ATA TCGCGGG TAGTGGCCGGATCGT TERM 4491 3540602 - 3540620 + G 95 -6.6 -5.1963 | overlap 3540603 CACACTGTTCGGTAA CGTCAGCG ACA CGCTGGCC TTTTTCTTCATTGCC TERM 4492 3540603 - 3540619 + G 77 -10.1 -3.70694 | overlap 3540602 ACACTGTTCGGTAAC GTCAGCG ACA CGCTGGC CTTTTTCTTCATTGC yhhQ 3540186 - 3540815 + | hypothetical protein SFV_3475 3540888 - 3541445 + | hypothetical protein TERM 4493 3541463 - 3541490 + T 100 -13.4 -5.52384 | opp_overlap 3541458 TTTAAGATGATGAGG CGGCCTCAGGGA CGTG TTCCGGAGGCCG TTTTTTTAATCGCCA yhhS 3542666 - 3541449 - | hypothetical protein TERM 4494 3543212 - 3543196 - g 75 -5.1 -4.60041 | ATGGACTCGGAAAAA GTGGTTA CCT TCACCAC AGCGCTAATGACCGG yhhT 3542800 - 3543849 + | hypothetical protein TERM 4495 3544129 - 3544097 - g 82 -11.3 -3.53224 | opp_overlap 3544087 3544124, overlap 3544118 CATTCGCGCCGGAAA CGCCGCTATGGTTCA ACT TAAGCCATAGCGGTG ACGATATCGCTCTGC yhhU 3543904 - 3544491 + | holo-(acyl carrier protein) synthase 2 nikA 3544602 - 3546176 + | periplasmic binding protein for nickel TERM 4496 3546222 - 3546242 + G 90 -7.5 -4.93296 | overlap 3546225 TGCTGATCCCGATGG TGCTCGCCG CCT CGGTGATCA TTTTTCTGATGCTGC nikB 3546176 - 3547120 + | nickel transporter permease NikB nikC 3547117 - 3547950 + | nickel transporter permease NikC nikD 3547950 - 3548714 + | nickel transporter ATP-binding protein nikE 3548711 - 3549517 + | nickel transporter ATP-binding protein yhhG 3549523 - 3549924 + | nickel responsive regulator TERM 4497 3549994 - 3549951 - T 76 -4.2 -5.03713 | gap 1, opp_overlap 3549959 3549964, overlap 3549953 3549959 AACAAGGAAAGAAAA GATATTAACTGAACTTAATTT ATA AAATTAAGTTCAGTTG-CATA GATAGATCCTGTAAA TERM 4498 3549994 - 3549953 - T 83 -9.9 -4.11369 | gap 1, opp_overlap 3549959 3549964, overlap 3549951 3549959 CAAGGAAAGAAAAGA TAT-TAACTGAACTTAATTT ATA AAATTAAGTTCAGTTGCATA GATAGATCCTGTAAA TERM 4499 3549959 - 3549987 + T 88 -14.9 -3.08133 | opp_overlap 3549951 3549953 3549959, overlap 3549964 AAGAAAAGATATTAA CTGAACTTAATTT ATA AAATTAAGTTCAG TTGCATAGATAGATC TERM 4500 3549987 - 3549959 - T 95 -14.9 -3.48814 | opp_overlap 3549959 3549964, overlap 3549951 3549953 AAGAAAAGATATTAA CTGAACTTAATTT ATA AAATTAAGTTCAG TTGCATAGATAGATC hicB 3550403 - 3550044 - | hypothetical protein yhhJ 3551858 - 3550734 - | putative transporter TERM 4501 3551078 - 3551062 - G 70 -10.1 -3.24232 | overlap 3551060 3551058 GTGGTGGCAAACAGA CTGAGCG CCA CGCCCAG CATAAACAGCGGGAT yhiH 3554593 - 3551858 - | ABC transporter ATP-binding protein TERM 4502 3553370 - 3553348 - G 85 -11.3 -3.65351 | gap 1, overlap 3553330 3553327 CCACCGCCAGCGAAA GCCGCT-GGC GAAT GCCGAGCGGC AATGACTCCGGCAGA yhiI 3555657 - 3554590 - | hypothetical protein TERM 4503 3554661 - 3554672 + g 72 -7.2 -4.1964 | GCACCCACGCTACGC CCGG TAAA CCGG TTTTGACATATTCCA TERM 4504 3555706 - 3555726 + r 74 -11.1 -2.80344 | opp_overlap 3555704 3555703, overlap 3555705 CGCGTGTTACAACTG CCGCCGAAC GAC GTTCAGCGG ATTCTTCCATCCGGG yhiJ 3557645 - 3556023 - | hypothetical protein yhiL 3559682 - 3557907 - | hypothetical protein TERM 4505 3558681 - 3558705 + g 91 -8.1 -5.08178 | opp_overlap 3558684 CATGTCTCTCGTATT TAATAAATTGT AGA GCAATTTATTA TTTTTATGTATGTAT SFV_3491 3559957 - 3560445 + | hypothetical protein TERM 4506 3560926 - 3560952 + T 91 -8.1 -5.03145 | opp_overlap 3560925 AAAATTTACATAATC CCAGCGTTA TTCATATCT TAACGCTGG TTTTTTACGAACTTA SFV_3492 3562232 - 3561468 - | hypothetical protein TERM 4507 3562895 - 3562875 - g 70 -4 -4.6008 | overlap 3562866 3562876 AAAATATAATGAAAA CGATGACA CCTAT CGTCATCA TTACTGGGCATCACT SFV_3493 3562511 - 3563239 + | hypothetical protein TERM 4508 3563322 - 3563302 - T 100 -12.6 -5.1925 | TTATAAGTTAAAAAA GGCGGGAT ATCAA ATCCCGCC ATGAAATTAACTAAT SFV_3494 3563858 - 3563346 - | hypothetical protein TERM 4509 3563832 - 3563818 - G 72 -5.6 -4.48987 | opp_overlap 3563817 GCCTGAGAAGCAAAA GCTGTC CCC GCCAGC ATGATTGCTAACAAT TERM 4510 3563887 - 3563899 + r 84 -7.7 -4.7923 | TGATTTTCATTTACA CTGCA AAA TGCAG TTTCTTTCTTTGCAT TERM 4511 3563992 - 3563970 - R 76 -5 -4.84761 | ACATCTTCACAAAAA TAAATTATGA ATT TCTTAATTTA GAAACTATAAACATG SFV_3495 3565145 - 3563997 - | putative fimbriae usher SFV_3496 3565237 - 3565602 + | insertion sequence 2 OrfA protein SFV_3497 3565560 - 3566465 + | insertion element IS2 transposase InsD SFV_3498 3567712 - 3566720 - | fimbrial protein remnant SFV_3499 3568646 - 3567843 - | periplasmic fimbrial chaperone protein TERM 4512 3568482 - 3568501 + g 73 -9.4 -3.70331 | opp_overlap 3568481, overlap 3568480 TCGCGTTGCACTAAG CTTCAGTT TAAA AACTGAAG TGTTTTGAGTCACTT TERM 4513 3568667 - 3568636 - G 100 -13.9 -4.00066 | TCGACAACTGATAAA TCCGCGTTCACTA ACAAGG TAATGAACGCGGA ACCAACCTACAACGC SFV_3500 3571080 - 3569806 - | hypothetical protein TERM 4514 3569849 - 3569859 + g 79 -2.4 -5.22104 | TCATTTACAAATACC CGAG CTG CGCG TTTTCTTATTTTTTC TERM 4515 3570486 - 3570472 - G 70 -5.6 -4.30001 | overlap 3570469 CAAAAAACCAAACAA GGCGAC GAT GCCACC TTCAGCCGTTACGAA TERM 4516 3570856 - 3570866 + g 77 -8.2 -4.0371 | opp_overlap 3570855 3570856 AAATAAACCAAGAAG GCCG ACA CGGC TTTGTGTAAGGACTA SFV_3501 3571096 - 3571395 + | IS600 ORF1 insB 3571801 - 3571406 - | IS1 ORF2 SFV_3503 3571984 - 3572226 + | putative IS1 encoded protein TERM 4517 3572327 - 3572307 - T 100 -15.5 -5.7946 | CCGCCAATAAAAAAA CACCACCTG ATA CAGGTGGTG AAAATGTAAAAACAA yhiN 3573786 - 3572632 - | hypothetical protein TERM 4518 3574682 - 3574663 - g 70 -4.2 -4.65933 | overlap 3574659 GAGCGTGAAAAGAAA GACGGC AAGAAAAA GCCGCC GTTCTGGACGCGTAT pitA 3574063 - 3575562 + | inorganic phosphate transporter TERM 4519 3575602 - 3575581 - T 77 -11.5 -3.14218 | opp_overlap 3575581, overlap 3575579 3575578 TACGCACCAAAACGA GCGGGTCAG TTTA CTGGCCCGC TTTTTTTATGCGTTA TERM 4520 3575581 - 3575602 + T 100 -13.7 -5.66684 | opp_overlap 3575579 3575578 3575581 TACGCACCAAAACGA GCGGGTCAG TTTA CTGGCCCGC TTTTTTTATGCGTTA yhiO 3575968 - 3575633 - | universal stress protein UspB uspA 3576359 - 3576793 + | universal stress protein TERM 4521 3576820 - 3576837 + T 100 -14.1 -4.77757 | CGACGTGTTCCTGAA CGCCCGC ATAT GCGGGCG TTTTGCTTTTTGGCG TERM 4522 3578621 - 3578596 - T 100 -19.1 -3.86346 | opp_overlap 3578596 TTATTCTTGCAGAAA GCAGGGTAGCG TTAT CGCTACCCTGC TTTACTTTTACACTG TERM 4523 3578596 - 3578621 + T 100 -19.1 -4.20806 | opp_overlap 3578596 TTATTCTTGCAGAAA GCAGGGTAGCG TTAT CGCTACCCTGC TTTACTTTTACACTG yhiQ 3579381 - 3578629 - | putative methyltransferase TERM 4524 3579240 - 3579217 - G 70 -4.6 -4.49531 | gap 1 AACAAAATCAACAAA GATGCCGCCAA GTT TTGGCT-CATC ACGCTTGCGCAATTC TERM 4525 3579335 - 3579356 + g 88 -11.5 -3.794 | opp_overlap 3579337, overlap 3579337 GCCGCCAGAACAGAT AAGGCGCCG TCTC CGGCGCCTG TTTCATCAATTAAGC TERM 4526 3579337 - 3579354 + g 95 -14.1 -3.48105 | opp_overlap 3579337, overlap 3579335 CGCCAGAACAGATAA GGCGCCG TCTC CGGCGCC TGTTTCATCAATTAA TERM 4527 3579354 - 3579337 - G 100 -14.1 -3.72788 | opp_overlap 3579337 3579335 CGCCAGAACAGATAA GGCGCCG TCTC CGGCGCC TGTTTCATCAATTAA prlC 3581431 - 3579389 - | oligopeptidase A TERM 4528 3579473 - 3579495 + g 74 -10.6 -3.21276 | opp_overlap 3579462, overlap 3579472 CAGATCCATCGGCTC TTCTGAACCG CCA CGGCTCAGAA TGTTGTCGAGGAACG TERM 4529 3580552 - 3580562 + g 70 -4.6 -4.46581 | opp_overlap 3580546, overlap 3580546 TTAAGAAATCCAGCA CCTG CTG CGGG TTTTCTGCCATTTTA TERM 4530 3582159 - 3582145 - g 75 -5.6 -4.58773 | CGTATGAAATGAAAA CCGACT ATC AGGCGG TGGTCAGCGGGATAG yhiR 3581583 - 3582476 + | hypothetical protein gor 3582548 - 3583900 + | glutathione reductase TERM 4531 3583935 - 3583909 - f 100 -13.8 -3.71649 | opp_overlap 3583909 3583902 GCGTTAAATGTTAAA GGGCTAAGAGTA GTG TGCTCTTAGCCC TTAATTACGTTTCCG TERM 4532 3583909 - 3583935 + F 100 -16 -3.43217 | opp_overlap 3583909, overlap 3583902 GCGTTAAATGTTAAA GGGCTAAGAGTA GTG TGCTCTTAGCCC TTAATTACGTTTCCG TERM 4533 3584396 - 3584364 - f 100 -16.6 -3.01791 | opp_overlap 3584373, overlap 3584373 ACTCTGGGCTGAAGA GTAAAAAAACCGAC GCGAA GTCGGTTTTTTTAC GTCCGGATTCGGACA TERM 4534 3584387 - 3584373 - f 93 -7.1 -5.63374 | opp_overlap 3584373, overlap 3584364 TGAAGAGTAAAAAAA CCGAC GCGAA GTCGG TTTTTTTACGTCCGG TERM 4535 3584373 - 3584387 + F 91 -7.1 -5.47218 | opp_overlap 3584373 3584364 TGAAGAGTAAAAAAA CCGAC GCGAA GTCGG TTTTTTTACGTCCGG TERM 4536 3584629 - 3584598 - f 70 -9.7 -3.0464 | gap 1, opp_overlap 3584606, overlap 3584606 AACTCAGGCTGAAGA GTAAAAAA-CCGAC GCAAA GTCGGTTTTTTTAC GTCCTGATTCAAACC TERM 4537 3584606 - 3584620 + F 91 -7.1 -5.48825 | opp_overlap 3584598 3584606 CTGAAGAGTAAAAAA CCGAC GCAAA GTCGG TTTTTTTACGTCCTG TERM 4538 3584620 - 3584606 - f 90 -7.1 -5.27779 | opp_overlap 3584606, overlap 3584598 CTGAAGAGTAAAAAA CCGAC GCAAA GTCGG TTTTTTTACGTCCTG arsR 3584780 - 3585133 + | DNA-binding transcriptional repressor ArsR TERM 4539 3585393 - 3585408 + G 90 -6.8 -5.08824 | TATCATCAGCCTGCT GCTGGA TGAG TCCGGC TTTTTTGAATGGGCA TERM 4540 3585489 - 3585510 + G 73 -9.3 -3.58343 | CTGGATTGTCCTGCT CGGTGCCGC CGTT GCGGCCCTG TTTGCCAATGATGGC arsB 3585187 - 3586476 + | arsenical pump membrane protein arsC 3586489 - 3586914 + | arsenate reductase SFV_3516 3587664 - 3587413 - | putative IS1 encoded protein insB 3587739 - 3588242 + | IS1 ORF2 SFV_3518 3588267 - 3589229 + | hypothetical protein TERM 4541 3589424 - 3589396 - f 74 -11.1 -2.77503 | opp_overlap 3589393 3589392 3589390, overlap 3589386 3589393 ATAACCACGTAATCA TGCTTCTCTGACA TTT TATCGGAGAAGCA ATGACTCTTTGTCTC TERM 4542 3590626 - 3590640 + G 70 -5 -4.50943 | opp_overlap 3590626 CAACATCTTGACAAA CAAATC AAT GGTTTG TTTTCTACATTGTTA SFV_3519 3589810 - 3591033 + | hypothetical protein TERM 4543 3591763 - 3591797 + G 74 -10.6 -3.14564 | TGGGATTACGGCTAT GGTGCATTCTGGCCGG AAC CGGGCTGGGGTGCGCC TTACTACACCAATGC slp 3591115 - 3591846 + | outer membrane protein induced after carbon starvation TERM 4544 3591857 - 3591887 + F 80 -12.7 -3.10522 | opp_overlap 3591850 3591858, overlap 3591860 AATAACACCACCGAA AGATGCAGATGCT TTCTC AGCATCTGCATCA TGTATTACATAAAAT TERM 4545 3591886 - 3591858 - f 100 -16.2 -3.72009 | opp_overlap 3591857 3591860, overlap 3591850 ATAACACCACCGAAA GATGCAGATGCT TTCTC AGCATCTGCATC ATGTATTACATAAAA TERM 4546 3591860 - 3591884 + F 82 -13 -2.76322 | opp_overlap 3591850 3591858, overlap 3591857 AACACCACCGAAAGA TGCAGATGCT TTCTC AGCATCTGCA TCATGTATTACATAA yhiF 3592002 - 3592532 + | hypothetical protein TERM 4547 3593236 - 3593266 + T 100 -12.6 -4.93968 | opp_overlap 3593236 ATAAAAATGCAAAAA GGAGCAGCAAGATG GCT CAACTTGCTACTCC TTTTTACTTGTACCT TERM 4548 3593266 - 3593236 - T 100 -14.8 -4.93595 | opp_overlap 3593236 ATAAAAATGCAAAAA GGAGCAGCAAGATG GCT CAACTTGCTACTCC TTTTTACTTGTACCT hdeB 3593610 - 3593284 - | acid-resistance protein TERM 4549 3593689 - 3593642 - R 73 -10.8 -3.00259 | gap 1, opp_overlap 3593646, overlap 3593646 TATAGAGATTATATA TGAACAGG-AGGAATAGCTGCTT TTA AAGAAGATATTCCGGCCTGTTCA ATATGCAAGGAAGTA hdeA 3594058 - 3593726 - | acid-resistance protein TERM 4550 3593908 - 3593895 - G 72 -6.7 -4.25283 | AGCGCTTCAGCAAAA CCAAC TGCA GTTGG CTGGAAGGATTCGTC hdeD 3594313 - 3594885 + | acid-resistance membrane protein TERM 4551 3594902 - 3594936 + F 100 -15.9 -3.26545 | opp_overlap 3594889 3594912, overlap 3594903 TACCCCGGTTGTCAC CCGGATCATAGTCAC TTGAT GTGACTATGATCCGA TTAATACTCTCTCCG TERM 4552 3594903 - 3594935 + F 100 -19.4 -2.55606 | opp_overlap 3594889 3594912, overlap 3594902 ACCCCGGTTGTCACC CGGATCATAGTCAC TTGAT GTGACTATGATCCG ATTAATACTCTCTCC TERM 4553 3595331 - 3595311 - f 100 -14.1 -4.65263 | opp_overlap 3595311 ATGCGTTAAAAGAAA GCTGGCAAT CCA ATTGCCAGC TTAAGTCGAAACAAG TERM 4554 3595311 - 3595331 + F 85 -14.1 -3.05384 | opp_overlap 3595311 ATGCGTTAAAAGAAA GCTGGCAAT CCA ATTGCCAGC TTAAGTCGAAACAAG yhiE 3595684 - 3596211 + | hypothetical protein TERM 4555 3596374 - 3596392 + T 95 -3.1 -6.02345 | overlap 3596351 AATGCTGGCAGGAAC TGTTGGC AGAAC GGCAACA TTTTTTTTGTCGTTG TERM 4556 3596640 - 3596623 - T 70 -9.8 -2.97475 | overlap 3596622 CCTGCGATGACAAAT CGGCGG AAAACG CCGCCG CCATGACGCCTGAGG TERM 4557 3596796 - 3596777 - T 70 -9.4 -3.31415 | TATCATTAAACGCAA CTTTATCG AAGG CGATAAAG TGAACCAGGGCGATT TERM 4558 3596903 - 3596865 - T 75 -9.6 -3.56594 | gap 1, overlap 3596856 3596855 CTAAACTCCGCCAAA GGC-TCGCTGGCGAAAG CGCTCT CTACCGCCAGCAATGCC CGCATCACCTTTAAC insB 3598111 - 3597608 - | IS1 ORF2 TERM 4559 3598505 - 3598489 - g 76 -3.7 -4.92363 | AAACATGGAGAAAAA GGTTTAA TTC CCAAACC TAAAGGCGTTAGTGC SFV_3529 3598225 - 3598854 + | IS150 ORF1(ORF A) TERM 4560 3599684 - 3599652 - g 100 -13.6 -4.55128 | opp_overlap 3599652 AGCCTGAAATTAAAA GGTCTGACTCCAAT TGAAT ATCGGAATCAGACC TATATGCCTCGTGTA SFV_3530 3598851 - 3599702 + | IS150 ORF2 TERM 4561 3599965 - 3599984 + T 90 -13.6 -3.3482 | AGAGTAAGAGTCTTC GGCGGGAA ATTA TTCCCGCC TTACTTACGGCGTTG TERM 4562 3600114 - 3600095 - T 100 -11.4 -6.32976 | opp_overlap 3600095 3600093 3600108 3600112 AAAAAAATAAAAAAA TCCCCGCC AAAT GGCAGGGA TCTTAGATTCTGTGC cspA 3600355 - 3600143 - | major cold shock protein TERM 4563 3600609 - 3600590 - R 100 -13.6 -4.08692 | TAATCGGTTGGAAAA CGGTCCTG TCAT CAGGACCG TAAACAGCAATAAAG yiaG 3600926 - 3600636 - | putative transcriptional regulator yiaF 3601240 - 3602070 + | hypothetical protein TERM 4564 3602098 - 3602080 - T 82 -7.4 -4.55446 | opp_overlap 3602080 CAATAAAGAGTAAAA GCCCGA GCGATTA TCGGGC TTTACTTCACGCAGT TERM 4565 3602080 - 3602098 + T 71 -7.4 -3.90291 | opp_overlap 3602080 CAATAAAGAGTAAAA GCCCGA GCGATTA TCGGGC TTTACTTCACGCAGT yiaE 3603094 - 3602120 - | 2-hydroxyacid dehydrogenase TERM 4566 3603188 - 3603161 - R 100 -14.3 -3.82481 | AGGAAAACTGAAGAA TGCCAGGTGAT TTCTGC ATCACCTGGCA TGAAAGGGATTACAG yiaD 3603848 - 3603198 - | putative outer membrane lipoprotein TERM 4567 3603884 - 3603911 + H 70 -9.2 -3.30124 | gap 1 TAATAACCTTTTTAT TCT-TTGCCACGG GTT CCGTGGCGGGAGA TTATGCCGCGTGAAC TERM 4568 3604690 - 3604661 - g 72 -4.3 -4.61231 | gap 1, opp_overlap 3604630 3604683 3604689, overlap 3604662 TGACAGTGGGAAAAA GCTGATCTGCATTG ATC CAATGC-GATCGGA AACCGTCGATTTCTT TERM 4569 3604898 - 3604886 - g 81 -6.2 -4.74706 | overlap 3604887 CGGAATAGCGAAAAA CGCC GAATG GGCG GCAGAGATTTGTGGT TERM 4570 3604979 - 3604961 - g 70 -6 -4.2558 | overlap 3604963 TATTTTCCACCAAAA TACCACCA TGC TGATGGCA GGCTGGGGAATGCAG TERM 4571 3606250 - 3606228 - g 73 -11.3 -2.66695 | overlap 3606227 3606225 GTGCTGACCAAAGAT CTCCCCAGC TCGCG GCTGGGGAA TGGCTGTGCGGGTAA bisC 3604065 - 3606344 + | biotin sulfoxide reductase yiaC 3606753 - 3606313 - | hypothetical protein tag 3607313 - 3606750 - | 3-methyl-adenine DNA glycosylase I TERM 4572 3607142 - 3607157 + g 83 -6.1 -5.00884 | ACTGATGAAAGCAGG CGCGA TAGTTT TCGCG TTTTTTGAGGACGGT TERM 4573 3607879 - 3607909 + G 79 -12.6 -3.06133 | overlap 3607881 ACCGATCCGTTATGG CATGCCAGCGTGAG TAG CTTAGGCTGGCGTG TTGACTCCCGGCTTG yhjY 3607471 - 3608169 + | putative lipase TERM 4574 3608304 - 3608318 + F 78 -6.4 -4.56775 | overlap 3608305 TTCATTCCGTTCTGA TGGCAT TTC ATGCCG TTTTTCCCCAAGCAT yhjX 3608398 - 3609606 + | putative resistance protein TERM 4575 3609691 - 3609708 + F 100 -12.7 -4.88129 | opp_overlap 3609689 3609688 TGACTCGTAAAATTT GGGCCAG TTAA CTGGCCC TTTTTACTGCTTTTT yhjW 3609930 - 3611621 + | phosphoethanolamine transferase TERM 4576 3611800 - 3611818 + F 100 -14.6 -5.22039 | opp_overlap 3611800 GACCAAATTCGAAAA GCCTGCTC AGC GAGCAGGC TTTTTTGCATTTGAA TERM 4577 3611818 - 3611800 - f 100 -14.6 -4.25074 | opp_overlap 3611800 GACCAAATTCGAAAA GCCTGCTC AGC GAGCAGGC TTTTTTGCATTTGAA TERM 4578 3613390 - 3613374 - g 81 -9.5 -4.02424 | ATGAAGCAGGATAAA TCCATCA ACC TGATGGA AATGCCGGGGCTGAA dppA 3612534 - 3614141 + | dipeptide transport protein dppB 3614449 - 3615468 + | dipeptide transporter permease DppB TERM 4579 3616491 - 3616442 - g 70 -10.7 -2.83403 | gap 1, overlap 3616419 3616441 TTTCGGCGACGAAAG CGCACCGTTCCGCGCCGTAGACCG CAT CAG-CTACAGCGTAAAACAGGGCG AAGTGGTCGGGATTG dppD 3616392 - 3617375 + | dipeptide transporter ATP-binding subunit dppF 3617372 - 3618376 + | dipeptide transporter ATP-binding subunit TERM 4580 3618404 - 3618386 - T 77 -7.3 -4.4715 | opp_overlap 3618386 CGTTAACTCACAAAA CCGGGGC CATGC GCTCCGG TTTACTCAATCAGCT TERM 4581 3618386 - 3618404 + T 79 -9.5 -3.76402 | opp_overlap 3618386 CGTTAACTCACAAAA CCGGGGC CATGC GCTCCGG TTTACTCAATCAGCT yhjV 3619740 - 3618406 - | putative transporter protein TERM 4582 3620086 - 3620045 - R 95 -11 -4.60797 | gap 2, overlap 3620081 GCTGGAGAGAGAAAA CCCCCGCA-CGTTG-CAGGT ATGC ACCTGACAACACCACGGGGG CCATTCTTGCATCCA TERM 4583 3620311 - 3620336 + r 100 -14 -4.72272 | TTTGCGCCCGGACCA GGCCGCAGGG GTGAAA CTCTGCGGCC TTTTTCGTAAGAAAA TERM 4584 3620365 - 3620353 - R 83 -6.3 -5.06414 | TTTTCGTAAGAAAAA TGCAA CGG TTGCA AGCGGATAATATTCT TERM 4585 3620569 - 3620528 - R 100 -13.2 -4.60797 | gap 2, overlap 3620564 GCTGGAGAGAGAAAA CCCCCGC-ACGTTG-CAGGT ATGC ACCTGACAACATCACGGGGG CCATTCTTGAACCTG TERM 4586 3620794 - 3620819 + r 100 -14 -4.72272 | TTTGCGCCCGGACCA GGCCGCAGGG GTGAAA CTCTGCGGCC TTTTTCGTAAGAAAA TERM 4587 3620848 - 3620836 - R 83 -6.3 -5.06414 | TTTTCGTAAGAAAAA TGCAA CGA TTGCA CGCGGATAATATTCT TERM 4588 3621052 - 3621011 - R 100 -13.2 -4.60797 | gap 2, opp_overlap 3621010 GCTGGAGAGAGAAAA CCCCCGC-ACGTTG-CAGGT ATGC ACCTGACAACATCACGGGGG CTAATCTTGAACCCA TERM 4589 3621277 - 3621302 + r 100 -16.2 -4.81685 | TTTGCGCCCGGATCA GGCCGCAGAG GTTAAA CTCTGCGGCC TTTTTCGTGCTTACT yhjU 3622992 - 3621313 - | hypothetical protein TERM 4590 3622015 - 3622001 - G 74 -2.7 -5.00884 | opp_overlap 3622001 ACTTCTTTCAAAAAA CCGCC GAACT GGCCG TTATGTCCCATCATC yhjT 3623180 - 3622989 - | hypothetical protein TERM 4591 3624675 - 3624686 + G 70 -5.8 -4.26188 | overlap 3624673 GGTGCTAAATCACGT CAGC GCTG GCTG TTTTACGTGTATGAC insB 3624510 - 3625013 + | IS1 ORF2 yhjR 3625798 - 3625986 + | hypothetical protein yhjQ 3625998 - 3626750 + | cell division protein TERM 4592 3626966 - 3626984 + F 71 -10.2 -2.64765 | overlap 3626961 ATCAACGCCTCGCGT CCGCGTCC GCT GGACCCGG TCCGTTATCTCATTC TERM 4593 3627051 - 3627039 - f 70 -4.7 -4.42062 | opp_overlap 3627049, overlap 3627047 3627048 CATCGCGCAAAGAAA CGCCG AAA CCGCG CAGCGGGCATTTTCA TERM 4594 3627057 - 3627047 - f 72 -8.2 -3.671 | opp_overlap 3627049, overlap 3627039 3627048 AAAGAAACGCCGAAA CCGC GCA GCGG GCATTTTCAGGTCTG yhjN 3629288 - 3631714 + | cellulose synthase regulator protein TERM 4595 3632662 - 3632650 - g 75 -6.9 -4.36914 | opp_overlap 3632649, overlap 3632651 3632652 GCCTTTTTTACAAAA CCGCG ATG CGCAG GCAGTTCAGCGCCAG yhjM 3631721 - 3632827 + | endo-1,4-D-glucanase TERM 4596 3632907 - 3632885 - f 79 -12 -3.22298 | TCGAGGCAGCACCAA CCATCAGCAG ACC CTGCGGATGG ACAGCGGCAACACTA TERM 4597 3632994 - 3632973 - f 73 -4.4 -4.83615 | gap 1, opp_overlap 3632973 CAGTCGCCAGAAAAA GCTGAAGCG TTTAT CGCCTC-GC TCTCTGCCAGCCAGC yhjK 3635259 - 3637208 + | putative phosphodiesterase TERM 4598 3637246 - 3637267 + F 73 -4.4 -4.7657 | opp_overlap 3637242 3637240 CTTTAAAAAGTGCTG GTTTGTGC GAGCCA GCTCAAAC TTTTTAACCTTTTTG TERM 4599 3637615 - 3637627 + G 74 -7.7 -4.08317 | opp_overlap 3637597 GTCGGTCGTACCGGC GCAGT CGC ACTGC TTTACTTTGAAATTG dctA 3637393 - 3638679 + | C4-dicarboxylate transporter DctA TERM 4600 3638692 - 3638721 + F 72 -9.3 -3.59315 | overlap 3638694 TAATCTCACCACTTA TGCCCGCACTC CCTTCCCC GAGTGCGGGTG TTTGCGCATAATTGC TERM 4601 3638694 - 3638719 + F 82 -11.9 -3.37259 | overlap 3638692 ATCTCACCACTTATG CCCGCACTC CCTTCCCC GAGTGCGGG TGTTTGCGCATAATT TERM 4602 3638745 - 3638773 + F 100 -14 -4.52669 | opp_overlap 3638755 TAATTGCCCCCTGTG CCTGAACTTACC ACCTG GGTGAGTTCAGG TTTATTTCACTTCTT TERM 4603 3638846 - 3638863 + F 93 -6.9 -5.7946 | TTAACGTCATTTAGA CTGACCG ACAA CGGGCAG TTTTTTTATTACCAG yhjJ 3638900 - 3640396 + | hypothetical protein TERM 4604 3640443 - 3640474 + T 76 -8 -4.24948 | overlap 3640444 AGGTATTTATGGATG AGCTGGATAGAGGG GTAA CACTTTATCCAGCC TTTTGCATATGCTGC TERM 4605 3640444 - 3640473 + T 77 -11.5 -3.14487 | overlap 3640443 GGTATTTATGGATGA GCTGGATAGAGGG GTAA CACTTTATCCAGC CTTTTGCATATGCTG kdgK 3641640 - 3640492 - | ketodeoxygluconokinase TERM 4606 3640643 - 3640656 + g 82 -3.1 -5.27335 | GAGTCGCCAGCTGCG GTGGT ATCG ATCAC TTTTTCTTTCGGCAG yhjH 3641653 - 3642420 + | EAL domain-containing protein TERM 4607 3642550 - 3642572 + G 72 -7 -4.1899 | overlap 3642542 TTGTTGTTGATTGTC GTGGCGATCA TTT TGATTGCAAC TTTTGACTGGAATCG yhjG 3642490 - 3644550 + | hypothetical protein TERM 4608 3644550 - 3644589 + T 73 -10.2 -2.9916 | gap 1, opp_overlap 3644547 3644557, overlap 3644549 GCAGATGAAGAAGTG ATG-ATAATTGCCGGATGT CTG ACATCCGGCAATTAAACAG ATTTAGATTTTTGGC TERM 4609 3644581 - 3644557 - T 100 -17.3 -3.45434 | opp_overlap 3644550 3644549, overlap 3644547 AAGAAGTGATGATAA TTGCCGGATGT CTG ACATCCGGCAA TTAAACAGATTTAGA yhjE 3646054 - 3644732 - | putative transport protein TERM 4610 3645076 - 3645096 + g 91 -11.9 -4.07568 | opp_overlap 3645070 3645067 CGAACAGGATGATCA GCGTGGTGA TGA TCACCATGC TTTTACGGCGACCAA TERM 4611 3645463 - 3645452 - G 70 -5.8 -4.27117 | CGCCGAGAAGATAAA TGGC ACAC GCCA GCCCCAGCTCATAAA TERM 4612 3645818 - 3645808 - G 75 -4.6 -4.86773 | CAAAATGACCAAAAA CGGC AGA GCCA ATGGGGCGCGCGACG TERM 4613 3645973 - 3645953 - G 79 -9.7 -3.73106 | GTAAAAGTCGAAGAA CTCAATGGC CGT GCCAATGAG AGAGGCGACAAGGAC TERM 4614 3646398 - 3646367 - R 82 -13 -2.78596 | opp_overlap 3646373 3646376 TATGTGCGCATTATA GCCGGATGCGATGC TGGC GCATCTTATCCGGC CTACGGGGAGCCAGG TERM 4615 3646463 - 3646426 - R 71 -10.5 -2.62512 | opp_overlap 3646427 3646430 3646458, overlap 3646425 3646424 3646439 AGGCCGAATAAAATC GTATGCCGGATAAGGCG TTTA CGCCGCATCCGGCCTAT TTTAAGGCTGCGTTT TERM 4616 3646427 - 3646462 + r 95 -11.8 -4.1196 | opp_overlap 3646426 3646425 3646424 3646439, overlap 3646430 3646458 GGCCGAATAAAATCG TATGCCGGATAAGGCG TTTA CGCCGCATCCGGCCTA TTTTAAGGCTGCGTT TERM 4617 3646430 - 3646459 + r 82 -13.5 -2.79004 | opp_overlap 3646426 3646425 3646424 3646439, overlap 3646427 3646458 CGAATAAAATCGTAT GCCGGATAAGGCG TTTA CGCCGCATCCGGC CTATTTTAAGGCTGC yhjD 3647478 - 3646465 - | hypothetical protein yhjC 3648498 - 3647527 - | putative transcriptional regulator LYSR-type TERM 4618 3648390 - 3648356 - G 72 -4.8 -4.62772 | opp_overlap 3648356 3648357, overlap 3648357 3648358 GGCAAAGCAAAGAAA TCCGCCGCGCGGGAAA AAC TTTCCAGCTCCGCGAC TTTGATGAACAACTG yhjB 3648946 - 3649548 + | putative regulator TERM 4619 3649553 - 3649582 + T 89 -9.3 -4.59109 | opp_overlap 3649554 3649555, overlap 3649555 TCTCCTCCTGAAGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 4620 3649581 - 3649554 - T 85 -12.8 -3.33696 | opp_overlap 3649553 3649555, overlap 3649555 CTCCTCCTGAAGTAA TGCCAGTCAGTT AAGC AACTGACTGGCT CTTTTTCGGGGCTGT TERM 4621 3649555 - 3649580 + T 100 -16.3 -3.90762 | opp_overlap 3649554 3649555, overlap 3649553 TCCTCCTGAAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG TERM 4622 3649580 - 3649555 - T 90 -16.3 -2.60075 | opp_overlap 3649555 3649553, overlap 3649554 TCCTCCTGAAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_3569 3650910 - 3649564 - | IS4 orf TERM 4623 3650900 - 3650925 + g 73 -9.1 -3.61398 | opp_overlap 3650900 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 4624 3650925 - 3650900 - G 100 -9.8 -5.61596 | opp_overlap 3650900 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 4625 3650993 - 3651036 + r 82 -11.2 -3.51329 | opp_overlap 3650996, overlap 3650974 3650996 TCCTCCTGAAGAGGA TAATTTTACAGCCAGCAG GAAGTTAG CGGCTGGCTGTAAAAATA TTATGGTTCGCCGTA TERM 4626 3650996 - 3651033 + r 81 -12.9 -2.59447 | opp_overlap 3650996, overlap 3650993 TCCTGAAGAGGATAA TTTTACAGCCAGCAG GAAGTTAG CGGCTGGCTGTAAAA ATATTATGGTTCGCC TERM 4627 3651033 - 3650996 - R 90 -12.9 -3.52073 | opp_overlap 3650996 3650993 TCCTGAAGAGGATAA TTTTACAGCCAGCAG GAAGTTAG CGGCTGGCTGTAAAA ATATTATGGTTCGCC treF 3652686 - 3651037 - | trehalase TERM 4628 3651079 - 3651065 - G 74 -7.8 -4.06001 | opp_overlap 3651065, overlap 3651040 3651037 TACAAACCAATTAAA CGGCGT ACC ACACCG TTAGTCCAGCCAAAC SFV_3571 3653076 - 3652897 - | putative IS1 encoded protein insB 3653151 - 3653654 + | IS1 ORF2 SFV_3573 3654077 - 3653808 - | hypothetical protein TERM 4629 3654185 - 3654198 + G 88 -2.3 -5.53436 | TACTGTCAATGAAGC CAGGG TGTA CGCTG TTTTTTCTCTTATGT yiiQ 3654178 - 3654777 + | hypothetical protein tpiA 3654885 - 3655652 + | triosephosphate isomerase TERM 4630 3655662 - 3655684 + T 90 -13.5 -3.6187 | overlap 3655658 GCTTAAGTCTGACAG GTGCCGGAT TTCAT ATCCGGCAC TTACTTTCCTTAACT cdh 3656654 - 3655707 - | CDP-diacylglycerol pyrophosphatase TERM 4631 3656546 - 3656524 - GT 100 -6.9 -5.72622 | opp_overlap 3656524 GTGACAAATAAAAAA CCCGGTCGC GAGAA ACCACCGGG TTTGATAATTATCCT sbp 3657558 - 3656569 - | sulfate transporter subunit TERM 4632 3656786 - 3656802 + gr 84 -3.6 -5.24129 | overlap 3656775 3656788 TTCAGGTAGGCTTCC GCCACC TCTTT GGTGCC TTTTTTCTCGACCAC TERM 4633 3657692 - 3657676 - R 93 -9.4 -4.7497 | opp_overlap 3657673 3657676 TTGAGGGATTAAAAA GGCGGA AGAAA TCCGCC TCATATTGCTGACAA TERM 4634 3657796 - 3657822 + r 78 -5 -4.96646 | overlap 3657797 TGCAGAATTCATGTA GGCCTGATAAGC GAA GCGCATCAGGCA TTTTTGCTTCTGTCA pfkA 3658900 - 3657878 - | 6-phosphofructokinase TERM 4635 3658184 - 3658195 + g 93 -5.8 -5.22039 | overlap 3658176 3658181 ATGTTCGGTAATCGC CACG ATCG CGTG TTTTTTACCTTTCGC TERM 4636 3658552 - 3658564 + g 77 -3.3 -5.15117 | CGATAACCACCAGCG CGTCG ATA CCACG TTTTTTCAGGTTTTC TERM 4637 3658782 - 3658812 + g 76 -11.1 -3.28924 | opp_overlap 3658771, overlap 3658771 ACAACCCCGCGAATT GCGGCGTTCATGC CTGGC GCATCACCGCCGC TTGTCAACACACCTA fieF 3659923 - 3659021 - | ferrous iron efflux protein F TERM 4638 3659399 - 3659385 - G 72 -10 -3.30106 | overlap 3659363 3659383 3659381 CCCAATGCAAACAGA GCATCG GCG CGATGC CAGCCGTACCAAGAC TERM 4639 3660029 - 3660013 - R 100 -12.3 -5.9873 | TGAGGATAAAAAAAA CCCCACA TCA TGTGGGG GAAGACAGGGATGGT cpxP 3660571 - 3660071 - | periplasmic repressor CpxP cpxR 3660787 - 3661419 + | DNA-binding transcriptional regulator CpxR TERM 4640 3662132 - 3662142 + G 70 -6.8 -4.05389 | overlap 3662105 CATGATGACCTCTCA GCAG CGT CTGC TTTCTGATATCTCTC cpxA 3661416 - 3662789 + | two-component sensor protein TERM 4641 3662779 - 3662797 + T 77 -8.8 -3.86015 | opp_overlap 3662780, overlap 3662780 GGTTGCCGCTGTATA AGCGGAGT TAA ACTCCGCA TTTGTAGGCAGGATA TERM 4642 3662780 - 3662796 + T 79 -12.3 -2.91395 | opp_overlap 3662780, overlap 3662779 GTTGCCGCTGTATAA GCGGAGT TAA ACTCCGC ATTTGTAGGCAGGAT TERM 4643 3662796 - 3662780 - T 81 -12.3 -3.28712 | opp_overlap 3662780 3662779 GTTGCCGCTGTATAA GCGGAGT TAA ACTCCGC ATTTGTAGGCAGGAT TERM 4644 3662857 - 3662871 + T 73 -10 -3.30124 | opp_overlap 3662815, overlap 3662815 CAGGATGCCTGATGC GACGCT GAT AGCGTC TTATCAGGCCTACAC yiiM 3663569 - 3662895 - | hypothetical protein TERM 4645 3663621 - 3663631 + H 71 -6.8 -4.11692 | ATATTTATTTTATGT CAGC CGT GCTG TTTTCGCGGTAAGTA TERM 4646 3663694 - 3663671 - H 95 -13.2 -3.94853 | GAACTCAATAGCAAA CCGGACGAAC GTTA GTTCATCCGG CTGTGGGGATTAGAC SFV_3584 3663796 - 3664161 + | insertion sequence 2 OrfA protein SFV_3585 3664185 - 3665024 + | IS2 ORF2 kdgT 3666037 - 3665054 - | 2-keto-3-deoxygluconate permease TERM 4647 3665998 - 3666009 + g 72 -5.8 -4.42386 | opp_overlap 3665983 3665981 GCGGGACGAGCATCA TCCC CCCC GGGA TTTTCTCAATCGAGC TERM 4648 3666153 - 3666140 - R 76 -5.3 -4.79174 | ATTTAATCAATAAAA GTGAT CAAA ATCAC ATCAATTGAAACGCT TERM 4649 3666216 - 3666242 + r 78 -5 -5.06451 | opp_overlap 3666220, overlap 3666220 GAATTTGATCACAAA AAAACCACCGCC GTT GGCGATGGTTCA TTTTTTAAGCTGATA TERM 4650 3666220 - 3666238 + r 84 -10.2 -3.93769 | opp_overlap 3666220, overlap 3666216 TTGATCACAAAAAAA CCACCGCC GTT GGCGATGG TTCATTTTTTAAGCT TERM 4651 3666238 - 3666220 - R 100 -12.4 -5.67063 | opp_overlap 3666220 3666216 TTGATCACAAAAAAA CCACCGCC GTT GGCGATGG TTCATTTTTTAAGCT sodA 3666916 - 3666296 - | superoxide dismutase TERM 4652 3666545 - 3666559 + g 75 -5.6 -4.6902 | opp_overlap 3666545 CCAGCCGGAACCAAA GCGGGA AGC TGCCGC TTTTTCAAATTCTGC TERM 4653 3668277 - 3668252 - R 70 -10.5 -2.52464 | opp_overlap 3668249 3668248, overlap 3668257 CTTTCTGCGAATTGA GATGACGCC ACTGGCTG GGCGTCATC CCGGTTTCCCGGGTA rhaR 3669191 - 3668400 - | positive regulator for rhaRS operon rhaS 3669990 - 3669154 - | transcriptional activator RhaS rhaB 3670278 - 3671747 + | rhamnulokinase rhaA 3671744 - 3673003 + | L-rhamnose isomerase rhaD 3673428 - 3674069 + | rhamnulose-1-phosphate aldolase yiiL 3674079 - 3674393 + | hypothetical protein TERM 4654 3674399 - 3674428 + F 90 -10.7 -4.37198 | overlap 3674401 3674402 CCTGCCGTAATTGCC CAATGTGCCGGAG ATGC CTCCGGCACAATA TTTTAAATTTCGATT TERM 4655 3674401 - 3674426 + F 95 -13.3 -3.78026 | overlap 3674399 3674402 TGCCGTAATTGCCCA ATGTGCCGGAG ATGC CTCCGGCACAA TATTTTAAATTTCGA TERM 4656 3674402 - 3674425 + F 100 -16.8 -2.86093 | overlap 3674401 3674399 GCCGTAATTGCCCAA TGTGCCGGAG ATGC CTCCGGCACA ATATTTTAAATTTCG TERM 4657 3674531 - 3674515 - f 70 -2.3 -5.05228 | AGTAAATCACAAAAA TAATGAA TAA CCCATTA ATGATTCATGTGGTT frvA 3674694 - 3675140 + | putative fructose-like phosphotransferase system subunit EIIA TERM 4658 3675525 - 3675573 + G 78 -9.4 -3.96327 | gap 1, opp_overlap 3675525 3675524, overlap 3675565 3675568 ACAGGAAGTGCAAAG CGGCAGCG-TGATGAGCCACCTG ATGG CGGGCGTCTCTGCGGCGCTGCCG TTTGTCATCGGCGGT frvB 3675151 - 3676602 + | putative PTS transporter components IIBC frvX 3676592 - 3677662 + | putative fructose-specific phosphotransferase system protein FrvX TERM 4659 3677749 - 3677771 + G 74 -10.6 -3.14125 | overlap 3677747 CAACAGACTGGCGTT TCAGGCAGGA CCA TCCTGCGTGA TATTGACTATCTCAA frvR 3677662 - 3678312 + | putative frv operon regulatory protein insB 3678540 - 3679043 + | IS1 ORF2 TERM 4660 3679108 - 3679074 - T 93 -13.8 -3.5782 | opp_overlap 3679074, overlap 3679077 AATTCACGAAATGAA TAAGTCCTGCAATTTA ATA TATATCGCAGGACTTA TTTTAATTAATTGCT TERM 4661 3679074 - 3679108 + T 100 -11.6 -4.50193 | opp_overlap 3679074 3679077 AATTCACGAAATGAA TAAGTCCTGCAATTTA ATA TATATCGCAGGACTTA TTTTAATTAATTGCT TERM 4662 3679105 - 3679077 - T 87 -11.1 -3.91541 | opp_overlap 3679074, overlap 3679074 TCACGAAATGAATAA GTCCTGCAATTTA ATA TATATCGCAGGAC TTATTTTAATTAATT fdhD 3679948 - 3679115 - | formate dehydrogenase accessory protein TERM 4663 3680598 - 3680588 - g 77 -8.2 -4.10657 | CTACATTGCGCAAAA CGCC GAA GGCG TGACTGTTAACCGCT fdoG 3680142 - 3683192 + | formate dehydrogenase-O, major subunit TERM 4664 3683390 - 3683415 + G 73 -11.3 -2.71791 | gap 1, opp_overlap 3683390, overlap 3683389 3683392 TACCGTCGGCAATAA CATTGGGG-TGT ACG ACAACCCCAATG ATTTAAGCGCCAAAT TERM 4665 3683415 - 3683390 - g 85 -11.3 -3.61715 | gap 1, opp_overlap 3683390 3683389 3683392 TACCGTCGGCAATAA CATTGGGG-TGT ACG ACAACCCCAATG ATTTAAGCGCCAAAT TERM 4666 3683796 - 3683785 - g 70 -5.8 -4.28018 | overlap 3683786 AAGAGTCGATGAAAA CGCT GGCG AGCG AGCGCGTTGCTGAGC fdoH 3683205 - 3684107 + | formate dehydrogenase-O, iron-sulfur subunit fdoI 3684104 - 3684739 + | formate dehydrogenase-O subunit gamma TERM 4667 3684788 - 3684807 + G 86 -10.7 -3.97307 | opp_overlap 3684788 3684785 CGAGCGAGAAACGTA CGGCGGA TATGAT TCCGCCG TTATTGTTCCCTCGG TERM 4668 3684807 - 3684788 - g 70 -10.7 -2.71325 | opp_overlap 3684788, overlap 3684785 CGAGCGAGAAACGTA CGGCGGA TATGAT TCCGCCG TTATTGTTCCCTCGG fdhE 3684736 - 3685665 + | formate dehydrogenase accessory protein FdhE TERM 4669 3685953 - 3685924 - T 77 -10.7 -3.30124 | overlap 3685950 TTGTAGGCCGGATAA GGCGTTCACGCCG CATC CGGCATGAACAAC GCGCACGTTGTCAGC TERM 4670 3685973 - 3685984 + T 75 -3 -5.09426 | overlap 3685962 ACGTTGTCAGCAATC TGAT TGAC ATCA TTTTTTCCCATTACC yiiF 3686237 - 3685995 - | hypothetical protein yiiE 3686817 - 3686455 - | hypothetical protein TERM 4671 3687007 - 3686980 - R 72 -10.6 -2.79133 | opp_overlap 3686980, overlap 3686982 TAATCTTTCATCACA GACCGGTCAGTA CTGC CACCAACCGGTC TTTACTTGCTCATCG TERM 4672 3687220 - 3687183 - R 74 -6.8 -4.34402 | opp_overlap 3687183 3687194 CGGGTCATAGCAAAA CTCCTGAGCAGGCGGC CACTAT GCCGCTTTCACTGGAG TTCTGAATACTGGTA TERM 4673 3687183 - 3687220 + r 70 -9 -3.38272 | opp_overlap 3687183, overlap 3687194 CGGGTCATAGCAAAA CTCCTGAGCAGGCGGC CACTAT GCCGCTTTCACTGGAG TTCTGAATACTGGTA SFV_3607 3688674 - 3687352 - | hypothetical protein SFV_3608 3688993 - 3688655 - | hypothetical protein SFV_3609 3689171 - 3688983 - | putative IS1 encoded protein insB 3689246 - 3689749 + | IS1 ORF2 TERM 4674 3690353 - 3690330 - T 73 -11 -2.61452 | overlap 3690329 3690332 ATGACCGGAATGAAT GAGAGAGGCA GCAC CGCCCCTCTC CATAAGCTACTCTTC yiiD 3691301 - 3690360 - | putative acetyltransferase yihZ 3691783 - 3691346 - | D-tyrosyl-tRNA deacylase rbn 3692652 - 3691780 - | ribonuclease BN yihX 3693245 - 3692646 - | phosphatase yihW 3694129 - 3693344 - | putative DEOR-type transcriptional regulator TERM 4675 3694198 - 3694185 - R 76 -2.4 -5.35222 | AAAAGTGACAAAAAA GATC GGGTTT GATC ACAGTCAGGGATCCC yihV 3695059 - 3694163 - | putative kinase TERM 4676 3694590 - 3694624 + g 71 -2.6 -5.0133 | opp_overlap 3694599 TCCCCGTCCAGAACG GTCATCACACCCGCCT GAC GGGCCAGGGTGAAGGC TTTTTTAGCGCCGTC TERM 4677 3695780 - 3695794 + G 75 -7 -4.36914 | overlap 3695773 CGCTCAATGCGCTTT CGGCAG AAG CCGCCG TTTTGTGCGAAGCCC yihU 3695227 - 3696123 + | putative dehydrogenase yihT 3696147 - 3697025 + | putative aldolase yihS 3697042 - 3698283 + | hypothetical protein TERM 4678 3698322 - 3698296 - f 95 -12.3 -4.15453 | TAACTGATCTGAAAA TAGGGTGCGGG TTTTC CCCTCACCCTA ACCCTCTCCCCAAAG TERM 4679 3698372 - 3698402 + F 79 -11.3 -3.35992 | gap 1, opp_overlap 3698380, overlap 3698373 TGCAGTTTTTGGGTT TGACAT-CAGCCTC ACGG GAGGCTGTATGTCG TTAATTAAGGTGCCT TERM 4680 3698373 - 3698401 + F 78 -12.6 -2.61274 | gap 1, opp_overlap 3698380, overlap 3698372 GCAGTTTTTGGGTTT GACAT-CAGCCTC ACGG GAGGCTGTATGTC GTTAATTAAGGTGCC yihR 3698397 - 3699323 + | putative aldose-1-epimerase yihQ 3699522 - 3701558 + | alpha-glucosidase TERM 4681 3702107 - 3702053 - g 93 -8.4 -4.81083 | gap 1, opp_overlap 3702101, overlap 3702054 GGCAATCACCAAAAA CCCCAACGAACGCGCCTCACTGGCG GCATGG CGTCAGGGCGGCGC-TACGCTGGGC CTGCTGCTGTGCACG TERM 4682 3702106 - 3702054 - g 82 -11.9 -3.47927 | gap 1, opp_overlap 3702101, overlap 3702053 GCAATCACCAAAAAC CCCAACGAACGCGCCTCACTGGCG GCATGG CGTCAGGGCGGCGC-TACGCTGGG CCTGCTGCTGTGCAC yihP 3701604 - 3702989 + | putative permease TERM 4683 3703019 - 3703000 - f 74 -5.6 -4.57882 | opp_overlap 3703003, overlap 3702978 3703001 3703003 CGTAATAATAATAAA CGACGCCC TGCG GGGCGTTA TAAGGAGTGATTATG TERM 4684 3703016 - 3703003 - f 71 -9.5 -3.21565 | opp_overlap 3703003, overlap 3702978 3703001 3703000 AATAATAATAAACGA CGCCC TGCG GGGCG TTATAAGGAGTGATT TERM 4685 3703003 - 3703016 + F 73 -9.5 -3.30619 | opp_overlap 3702978 3703003 3703001 3703000 AATAATAATAAACGA CGCCC TGCG GGGCG TTATAAGGAGTGATT TERM 4686 3703099 - 3703081 - g 90 -7.4 -5.00884 | opp_overlap 3703079 ATCTGCGGGAAAAAA TCGCCTAT GGT ATGGGCGA CGTCGGTTCGAATTT yihO 3703032 - 3704489 + | putative permease SFV_3624 3704468 - 3704854 + | hypothetical protein insB 3705351 - 3704848 - | IS1 ORF2 yihN 3706632 - 3705574 - | putative resistance protein TERM 4687 3706096 - 3706086 - G 75 -6.8 -4.35474 | CAAAGAAAATAATAA TGCC TAC GGCA ATCACAATAAGGGAA TERM 4688 3706687 - 3706703 + r 78 -6.6 -4.68384 | GCAATAAGATACCGA CCATTC ATATG GAATGG TTTTATTAACTGCGT yihM 3707714 - 3706734 - | hypothetical protein yihL 3708432 - 3707722 - | putative transcriptional regulator TERM 4689 3707885 - 3707895 + g 93 -4 -5.52986 | GGCATTCTGACGGGT TTGA AAA TCAA TTTTTTTACTACCGT TERM 4690 3707991 - 3707975 - G 72 -4.3 -4.63486 | opp_overlap 3707975 AGTTGTTCAATAAAA CCCGGAG CAA CTTCAGG ATTAATATATGTTTC TERM 4691 3708621 - 3708608 - H 100 -3.7 -6.13 | overlap 3708610 ACAGGTAAAAAAAAA CCTGC CATC GCTGG CTAATGCCGATCAGT TERM 4692 3708674 - 3708699 + H 100 -9.8 -5.61596 | opp_overlap 3708674 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT TERM 4693 3708699 - 3708674 - H 72 -9.1 -3.61398 | opp_overlap 3708674 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT SFV_3629 3708689 - 3710035 + | IS4 orf TERM 4694 3710046 - 3710017 - T 89 -9.3 -4.59109 | overlap 3710019 3710040 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TAGCCATCGCTGGCA TERM 4695 3710044 - 3710019 - T 100 -16.3 -3.90762 | overlap 3710017 3710040 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTAGCCATCGCTGG yihK 3711784 - 3710087 - | putative GTP-binding factor TERM 4696 3712063 - 3712077 + H 75 -10 -3.481 | opp_overlap 3712056 3712057 3712070, overlap 3712059 3712070 TATCCAAAGGTCATT GCACCA ATA TGGTGC TTAATGTTTCCATTG TERM 4697 3713070 - 3713060 - g 70 -6.8 -4.13945 | ACCTTTATGCCAAAA CCGA TGT TCGG TGATAACGGCTCCGG glnA 3712283 - 3713692 + | glutamine synthetase TERM 4698 3713709 - 3713729 + F 80 -9.6 -3.91911 | overlap 3713710 AGTTGAAGTTGTACT ACCCGGCG CACAA CGCCGGGA TTTAGTTGCCGTGGA TERM 4699 3713710 - 3713728 + F 82 -13.1 -2.94825 | overlap 3713709 GTTGAAGTTGTACTA CCCGGCG CACAA CGCCGGG ATTTAGTTGCCGTGG TERM 4700 3713753 - 3713770 + F 90 -7 -5.28176 | CCGTGGAAACTTTCA GCCCAT CTCTGC ATGGGC TTTTTTCTCCGTCAA TERM 4701 3714305 - 3714293 - g 75 -4.7 -4.83269 | opp_overlap 3714294, overlap 3714284 3714294 ACATGAGATTAAAAA TCCGC TTG GCGGT TTACGTGGCGCGGCG glnL 3713865 - 3714914 + | nitrogen regulation protein NR(II) glnG 3714926 - 3716335 + | nitrogen regulation protein NR(I) TERM 4702 3716622 - 3716603 - T 73 -10 -3.30124 | opp_overlap 3716605 3716606, overlap 3716605 3716606 TCGTAGGCCTGATAA GACGCGAC CAGC GTCGCATC AGGCATCATGCTCAG TERM 4703 3716605 - 3716660 + T 70 -9 -3.30124 | gap 1, opp_overlap 3716603 3716605 3716606, overlap 3716606 GTAGGCCTGATAAGA CGCGACCAGCGTCGCATCAGGCATC ATGCTCA GATGCCTGATGCGGCG-TAAACGCC TTATCCGGCCTACAA TERM 4704 3716660 - 3716605 - T 77 -11.2 -3.21924 | gap 1, opp_overlap 3716605 3716606, overlap 3716603 3716606 GTAGGCCTGATAAGA CGCGACCAGCGTCGCATCAGGCATC ATGCTCA GATGCCTGATGCGGCG-TAAACGCC TTATCCGGCCTACAA TERM 4705 3716606 - 3716659 + T 78 -12.5 -2.57931 | gap 1, opp_overlap 3716603 3716605 3716606, overlap 3716605 TAGGCCTGATAAGAC GCGACCAGCGTCGCATCAGGCATC ATGCTCA GATGCCTGATGCGGCG-TAAACGC CTTATCCGGCCTACA TERM 4706 3716659 - 3716606 - T 86 -14.7 -2.5294 | gap 1, opp_overlap 3716606 3716605, overlap 3716603 3716605 TAGGCCTGATAAGAC GCGACCAGCGTCGCATCAGGCATC ATGCTCA GATGCCTGATGCGGCG-TAAACGC CTTATCCGGCCTACA TERM 4707 3716740 - 3716776 + T 74 -10.3 -3.24735 | gap 1, opp_overlap 3716736, overlap 3716736 3716734 TTCTCAGCACATTGA TGGCGCTTTCGTTTTC TACTTT GTAAACGAA-GCGCCA TTCACTCTTTAAATC hemN 3718158 - 3716785 - | coproporphyrinogen III oxidase TERM 4708 3718185 - 3718242 + r 100 -14.2 -4.36914 | gap 3, overlap 3718187 3718221 3718224 3718227 CCGATGGCGTCTCTG GCGGCTACGGCGTACCGGCGGATG-CCCG TTT CGGGTCATCAGCCGGT-TGC-GCAGCCAC TTTTGTCGCCGCGAC TERM 4709 3718187 - 3718240 + r 90 -15.4 -2.52946 | gap 3, overlap 3718185 3718221 3718224 3718227 GATGGCGTCTCTGGC GGCTACGGCGTACCGGCGGATG-CCCG TTT CGGGTCATCAGCCGGT-TGC-GCAGCC ACTTTTGTCGCCGCG TERM 4710 3718224 - 3718265 + r 72 -10.2 -2.91144 | overlap 3718187 3718185 3718221 3718227 CCCGTTTCGGGTCAT CAGCCGGTTG-CGCAGCCAC TTTT GTCGCCGCGACAACCG-CTG TAGTTTAACGAATAA yihI 3718919 - 3718347 - | hypothetical protein TERM 4711 3718965 - 3718920 - H 100 -19.3 -3.69341 | opp_overlap 3718932, overlap 3718932 TCTAACAGAAAGCAA GCAAAGAAAAAAGGCGACAGA TTAC TCTGTCGCCTTTTTTCCTGAC TCATAACCCTTAACG TERM 4712 3718932 - 3718953 + H 100 -14.5 -5.1675 | opp_overlap 3718932 3718920 CAAGCAAAGAAAAAA GGCGACAGA TTAC TCTGTCGCC TTTTTTCCTGACTCA TERM 4713 3718953 - 3718932 - H 100 -14.5 -5.72053 | opp_overlap 3718932, overlap 3718920 CAAGCAAAGAAAAAA GGCGACAGA TTAC TCTGTCGCC TTTTTTCCTGACTCA yihA 3719474 - 3720070 + | GTPase EngB TERM 4714 3720228 - 3720203 - T 100 -19.1 -5.4505 | opp_overlap 3720196 TCGCCCAATAAAAAA CGCCCCAGTCA TTAC TGACTGGGGCG GCTAAAATATTCAGC polA 3723238 - 3720452 - | DNA polymerase I TERM 4715 3721423 - 3721434 + g 81 -7.2 -4.64334 | CCGACGTTGACGGCG CGCC ACCC GGCG TTTTCTTCAGCGGTT TERM 4716 3722312 - 3722328 + g 70 -3.5 -4.64657 | opp_overlap 3722304, overlap 3722312 3722314 TGCAACACTGGTTTC CTGCGGC TTC GCGGCTG TTTTTGCCCCTTTGG TERM 4717 3722610 - 3722640 + g 76 -3.8 -5.00616 | TACAGCGTATCCAGC CCGCCAAGACCTTG CAG CAATGCCTGCGCGG TTTTTTCACCGACGC TERM 4718 3722844 - 3722857 + g 70 -3.7 -4.66833 | overlap 3722845 CCAGTGCTAATCAGC ACCGG ACGC CCGGC TTTTTCGACTTCGCG TERM 4719 3723408 - 3723431 + H 78 -6.1 -4.56642 | overlap 3723410 TCGCTTTTAATTTAT TATCATGCT TTTTAC AGCATGATG TTTGTCTTTGTTTTT TERM 4720 3723573 - 3723583 + H 74 -8.2 -4.00756 | TTTCTGCTAAAATCT GCGC CTT GCGC TTCTTTAGTGCACTG TERM 4721 3723672 - 3723692 + G 100 -6.9 -5.4833 | overlap 3723675 TTTTGCTGAGTATCG TATTGACCA TTT TGGTCACTA TTTTTTGTTCCGTCC TERM 4722 3723759 - 3723774 + G 77 -3.2 -5.10601 | overlap 3723760 CTGTGCCAGCCATTT GGCGAA AGGT TTCGCG TTTTTGTGATTTTAT TERM 4723 3724028 - 3724065 + G 70 -6.3 -4.22554 | gap 1 GGCCTGGCGTGCTGG GCGCTGGATATGCCGTTT ATG AAGCGTTAT-TCCCGCGC TTATTTATTACGTCA yihG 3723578 - 3724534 + | putative endonuclease TERM 4724 3724536 - 3724572 + T 83 -8.9 -4.25104 | gap 1, opp_overlap 3724531 3724536 3724535, overlap 3724537 3724538 GTCAGAATAAGTAAG T-TTTACTCGCCTCTG AATGAG CAGAGGCGAGTGAGTA TTTTAATGAACAAAA TERM 4725 3724537 - 3724570 + T 100 -14 -3.73042 | opp_overlap 3724531 3724536 3724535, overlap 3724536 3724538 TCAGAATAAGTAAGT TTTACTCGCCTCTG AATGAG CAGAGGCGAGTGAG TATTTTAATGAACAA TERM 4726 3724538 - 3724569 + T 93 -15.3 -2.83504 | opp_overlap 3724531 3724536 3724535, overlap 3724537 3724536 CAGAATAAGTAAGTT TTACTCGCCTCTG AATGAG CAGAGGCGAGTGA GTATTTTAATGAACA insB 3725838 - 3725335 - | IS1 ORF2 TERM 4727 3726598 - 3726608 + r 76 -4 -4.91712 | opp_overlap 3726598 GGGAATTAAAAAAGC CTTT GTC AAAG TTTTTATAACTTAAC TERM 4728 3726915 - 3726896 - R 100 -13.6 -6.01369 | opp_overlap 3726896 TAAATAATAAAAAAA GCCCGTGA ATAT TCACGGGC TTTATGTAATTTACA TERM 4729 3726896 - 3726915 + r 100 -13.6 -4.17516 | opp_overlap 3726896 TAAATAATAAAAAAA GCCCGTGA ATAT TCACGGGC TTTATGTAATTTACA TERM 4730 3726922 - 3726938 + r 75 -3.1 -5.24129 | overlap 3726920 TTCACGGGCTTTATG TAATTTA CAT TGAATTA TTTTTTCTCGGACAG dsbA 3727562 - 3726936 - | periplasmic protein disulfide isomerase I yihE 3728487 - 3727579 - | serine/threonine protein kinase TERM 4731 3727608 - 3727620 + g 72 -6.3 -4.31043 | TTAATTGCAAAGGGG GTTCT TGT AGAAC TTTTGCCTGTTCTAT yihD 3728911 - 3728642 - | hypothetical protein mobA 3728990 - 3729565 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 4732 3729570 - 3729560 - g 71 -3.2 -4.7373 | CGATGGCAGGAAAAA CGAT GAT ACCG TTACTCGCCTTTGCC TERM 4733 3729774 - 3729749 - g 100 -14.1 -3.85698 | opp_overlap 3729746, overlap 3729712 3729706 CTGGCGCGGCACAAA CCATCGTTGCC AGCC AGCAACGATGG GCCTTGATGACGGAA mobB 3729547 - 3730074 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 4734 3730159 - 3730140 - T 100 -10 -4.7629 | opp_overlap 3730140 TCACCAACGCAAAAA GGCCATCC TGAC GGATAGCC TTTCGCTTAATTTGA TERM 4735 3730306 - 3730327 + T 74 -8.7 -3.91196 | GCTAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 4736 3732795 - 3732807 + T 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 4737 3733349 - 3733373 + T 71 -8 -3.93061 | gap 1, opp_overlap 3733355 AAAATTTGAGAGACT CAC-GAACAAC TTTC GTTGTTCAGTG TTTCAATTTTCAGCT TERM 4738 3733575 - 3733588 + T 75 -6.7 -4.41177 | overlap 3733540 GTATCAGTCTGCTTC GCAAG ACGC CTTGC TTTTCACTTTCTATC hemG 3736109 - 3735564 - | protoporphyrinogen oxidase TERM 4739 3735950 - 3735969 + g 70 -6.4 -4.22338 | opp_overlap 3735953, overlap 3735953 AGCGAATAGAAGCAC CAATGACC ACAC GGTCATAG TTTTCCCATTGTGGT trkH 3737572 - 3736121 - | potassium transporter TERM 4740 3736395 - 3736376 - G 75 -5 -4.84761 | ATAGGCGGAGAAAAA TCCCCAAA CGGC TTCGAGGA TACGTTCCGGCAGTG yigZ 3738228 - 3737611 - | hypothetical protein TERM 4741 3737941 - 3737910 - G 77 -11.6 -3.23853 | opp_overlap 3737909 3737912, overlap 3737908 CGGTGCCAAGCAATA TGCCGCCGTAGTAG CGCA CTACCACAGCGGTA ATTTCCCCGACGCCG pepQ 3739556 - 3738225 - | proline dipeptidase TERM 4742 3739628 - 3739650 + H 72 -4.8 -4.60648 | CCAGAGCGTGATTTC TGCCGAGC GTGATCA GGTCGGCA TTTCTTTAATCTTTT TERM 4743 3739941 - 3739961 + G 76 -3.9 -4.91459 | overlap 3739942 AAAGCAGCCTTTATC GTCGGTGCT GAT ATCACCGAA TTTTTGTCCCTGTTC TERM 4744 3741022 - 3740997 - g 79 -4 -5.16151 | gap 1, overlap 3740998 3741000 GAAACCGAACAAAAA GTACGCCAGGA TACCG TGCTGGCGT-C TAACACTTCAACCAT fadB 3739746 - 3741935 + | multifunctional fatty acid oxidation complex subunit alpha fadA 3741945 - 3743108 + | 3-ketoacyl-CoA thiolase TERM 4745 3743200 - 3743167 - T 79 -11.7 -3.12895 | overlap 3743165 3743177 3743179 TCCGGCACCAATATA GGCCTGATAAGACGC GCCA GCGTCGCATCAGGCA TCGTGCACCAATTGC TERM 4746 3743269 - 3743287 + T 100 -9.5 -5.76633 | TTAGTTGCCGTTCTT CCCGCCT GTCAG GGGCGGG TTTTTTTATATCTCA fre 3744034 - 3743300 - | FMN reductase TERM 4747 3743941 - 3743918 - G 79 -3.7 -5.14626 | overlap 3743920 AGCACGAAAAGAAAA GGCCGCGTC TGGCAC GATGCGGAC ACGATATACGGTATC TERM 4748 3744042 - 3744054 + r 72 -6.2 -4.24123 | opp_overlap 3744041 3744037 3744042 TAGGGCAAAACAAAC GCGC ATCAG GCGC TTTTACCGTTGTTAA yigC 3745540 - 3744047 - | 3-octaprenyl-4-hydroxybenzoate decarboxylase TERM 4749 3744910 - 3744892 - G 70 -6.6 -4.04206 | CCAGCGCCACAGAAA CCGGGAAA CGT TCGCCCGG ATGCGCCGCACACCA TERM 4750 3745128 - 3745140 + g 85 -3.3 -5.4505 | overlap 3745123 TTGAGATCGACGTCA TCGCC AGA GACGA TTTTTTGTTGGCAGG TERM 4751 3745924 - 3745937 + G 72 -8.1 -3.95219 | CCATCAGCGCTACGC GTGGC GTCA GCCAC TTTGTGCGCTTTGGC rfaH 3745707 - 3746195 + | transcriptional activator RfaH tatD 3746974 - 3746192 - | DNase TatD TERM 4752 3746989 - 3747014 + r 86 -8.9 -4.49364 | opp_overlap 3746991 3746994, overlap 3746990 3746991 3746994 TCCTGTACTCCATAT GACAACCGCCC TGAC GGGCGGTTGAA TTTATTCTTCAGTTT TERM 4753 3746990 - 3747013 + r 81 -12.4 -3.27992 | opp_overlap 3746991 3746994, overlap 3746989 3746991 3746994 CCTGTACTCCATATG ACAACCGCCC TGAC GGGCGGTTGA ATTTATTCTTCAGTT TERM 4754 3746991 - 3747012 + r 90 -15.9 -2.5571 | opp_overlap 3746991 3746994, overlap 3746990 3746989 3746994 CTGTACTCCATATGA CAACCGCCC TGAC GGGCGGTTG AATTTATTCTTCAGT TERM 4755 3747012 - 3746991 - R 90 -15.9 -2.63596 | opp_overlap 3746991 3746990 3746989 3746994, overlap 3746994 CTGTACTCCATATGA CAACCGCCC TGAC GGGCGGTTG AATTTATTCTTCAGT TERM 4756 3746994 - 3747009 + r 82 -11.8 -3.41554 | opp_overlap 3746991 3746994, overlap 3746991 3746990 3746989 TACTCCATATGACAA CCGCCC TGAC GGGCGG TTGAATTTATTCTTC TERM 4757 3747009 - 3746994 - R 82 -11.8 -3.47078 | opp_overlap 3746994 3746991 3746990 3746989, overlap 3746991 TACTCCATATGACAA CCGCCC TGAC GGGCGG TTGAATTTATTCTTC yigU 3747792 - 3747016 - | TatABCE protein translocation system subunit TERM 4758 3747454 - 3747442 - G 70 -4.8 -4.53303 | overlap 3747451 CATGCCGATATAAAA CAGC AGAGA GCTG GAAACCAGCAGCGGC SFV_3661 3748310 - 3747795 - | sec-independent translocase tatA 3748625 - 3748314 - | twin argininte translocase protein A ubiB 3750302 - 3748662 - | putative ubiquinone biosynthesis protein UbiB TERM 4759 3750183 - 3750220 + g 83 -9.9 -4.1196 | gap 1, opp_overlap 3750183 3750186 TGGCATCCAGAATAA TGAGTATCGCCATAGCCG TAG CGGC-AGGGTGATACGCA TTTTGGGGATCAGTT yigP 3750904 - 3750299 - | hypothetical protein TERM 4760 3750758 - 3750736 - G 76 -10.6 -3.29471 | overlap 3750737 CGCCCAGTACATCAA CCTGGCGTTC GCT GAACACCAGA ATCAATGACGTCGAA TERM 4761 3750757 - 3750737 - G 73 -11.9 -2.57468 | overlap 3750736 GCCCAGTACATCAAC CTGGCGTTC GCT GAACACCAG AATCAATGACGTCGA ubiE 3751673 - 3750918 - | ubiquinone/menaquinone biosynthesis methyltransferase yigN 3753195 - 3751768 - | DNA recombination protein RmuC TERM 4762 3752580 - 3752594 + g 85 -7.1 -4.78839 | TCAATACTACCTCGC CCCAG TTGCC CTGGG TTTTATTGTCGCCTT TERM 4763 3753316 - 3753300 - R 100 -9.4 -4.98672 | CGCAAAAATACAAAA GGCCGA ACGCG TCGGCC TTCAGACAGGAGAAG udp 3754097 - 3753336 - | uridine phosphorylase TERM 4764 3754246 - 3754224 - H 72 -6.4 -4.28548 | opp_overlap 3754224 ATTTACCCACCAAAA GTGATTCATA TCA CATAAATCAC TCTTCATTCTGCAGG ysgA 3754482 - 3755174 + | putative hydrolase TERM 4765 3755207 - 3755183 - T 100 -14.3 -4.5442 | opp_overlap 3755185, overlap 3755185 GCTGTAATGAGAAAA GACCGGGTGGT ATT ACCACCCGGTT TGGATTTACCCCCGA TERM 4766 3755205 - 3755185 - T 100 -16.9 -3.8823 | opp_overlap 3755185, overlap 3755183 TGTAATGAGAAAAGA CCGGGTGGT ATT ACCACCCGG TTTGGATTTACCCCC TERM 4767 3755185 - 3755205 + T 100 -16.9 -3.84451 | opp_overlap 3755185 3755183 TGTAATGAGAAAAGA CCGGGTGGT ATT ACCACCCGG TTTGGATTTACCCCC metE 3757474 - 3755213 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 4768 3755261 - 3755286 + g 74 -7.5 -4.07687 | overlap 3755254 CATGTTCGCCAGTGC CGCGCGGGT TTCTGGCC AGCCGCGCG TTTTCAGGCCACAGT TERM 4769 3756404 - 3756418 + g 78 -5.7 -4.82901 | CGCATCGCGCAGCAG TGCCA GTTCA TGGCA TTTTTGTAGGGCGAA TERM 4770 3757297 - 3757319 + g 70 -4.1 -4.71426 | gap 1, opp_overlap 3757288, overlap 3757300 CAAAATCGCCCACCG GC-AGCAGGT CGAT ACCCGCTTGC TTTTGTTGATCCCAG TERM 4771 3757745 - 3757735 - gR 74 -6.8 -4.23434 | overlap 3757736 3757744 TAAAACACCTGAAAA CGCT ACA AGCG TTGCGGAACTGCGGC yigM 3759450 - 3758551 - | hypothetical protein metR 3757710 - 3758663 + | regulator for metE and metH TERM 4772 3759489 - 3759445 - GT 77 -10.2 -3.47322 | gap 1 GGTGATGATAAGTAA CGCCACAATGGAAAACTCTTT GATT AACGAGTAT-CCATTGTAGCG AAGTATCAGGTTGAC yigL 3760389 - 3759526 - | putative sugar phosphatase pldB 3761299 - 3760334 - | lysophospholipase L2 TERM 4773 3760401 - 3760386 - G 74 -3.2 -5.00616 | opp_overlap 3760394 3760396 TGCCTGTTGAAAAAA TCAACG ATGG CGTGGA GCGCGACTGAGCGCA TERM 4774 3760743 - 3760768 + gH 73 -10.3 -3.08996 | opp_overlap 3760742 3760743 ACGTTGATAGCAAAC GGCAACGCGCG CCAG CGCCCGGTGCC TATTGCATAGCCATC TERM 4775 3760768 - 3760743 - GH 72 -10.3 -2.8978 | opp_overlap 3760743, overlap 3760742 ACGTTGATAGCAAAC GGCAACGCGCG CCAG CGCCCGGTGCC TATTGCATAGCCATC rhtB 3761467 - 3762087 + | homoserine/homoserine lactone efflux protein TERM 4776 3762128 - 3762092 - T 89 -8.8 -4.58395 | gap 1, opp_overlap 3762096 3762105, overlap 3762096 GGCATGCGTGAAAAA TAATGTCGGATGCGGCG TAAA CGCCTTATCCGAC-TTA CTCTGAAGACGCGTC TERM 4777 3762125 - 3762096 - T 79 -12.1 -3.23855 | opp_overlap 3762096 3762105, overlap 3762092 TGCGTGAAAAATAAT GTCGGATGCGGCG TAAA CGCCTTATCCGAC TTACTCTGAAGACGC TERM 4778 3762096 - 3762125 + T 90 -14.3 -3.25823 | opp_overlap 3762096 3762092, overlap 3762105 TGCGTGAAAAATAAT GTCGGATGCGGCG TAAA CGCCTTATCCGAC TTACTCTGAAGACGC yigJ 3762769 - 3762149 - | threonine efflux system recQ 3764662 - 3762833 - | ATP-dependent DNA helicase RecQ TERM 4779 3763032 - 3763048 + g 71 -9.5 -3.5394 | opp_overlap 3763031 TCATCGGCAATCGAT TTACGCA GTT TGCGTAA TTTGGCGAACAGTTT TERM 4780 3764711 - 3764690 - R 100 -12.3 -5.27335 | overlap 3764684 TGCCTGAAATAAAAA CAGGCGCTA TTTT CAGCGCCTG CGCGAGAAACTGCAA pldA 3765664 - 3764795 - | phospholipase A yigI 3765811 - 3766296 + | hypothetical protein TERM 4781 3766319 - 3766307 - f 72 -4.8 -4.67943 | opp_overlap 3766307, overlap 3766302 3766310 GTTGAAGACATAAAA GCAG GTAAA CTGC TGTTACCAATTAAAA TERM 4782 3766362 - 3766397 + G 74 -3.2 -4.89521 | gap 1, opp_overlap 3766364 3766365, overlap 3766365 GATGGATGCAAAACA AACGCGGCAGG-GCG TATTACT CGCTCTTGCCGCTTA TTTTATTTGGGGTAT TERM 4783 3766395 - 3766364 - g 70 -3.6 -4.68908 | gap 1, opp_overlap 3766362 3766365, overlap 3766365 TGGATGCAAAACAAA CGCGGC-AGGGCG TATTACT CGCTCTTGCCGCT TATTTTATTTGGGGT TERM 4784 3766365 - 3766394 + G 90 -9.3 -4.54026 | gap 1, opp_overlap 3766364 3766365, overlap 3766362 GGATGCAAAACAAAC GCGGCAGG-GCG TATTACT CGCTCTTGCCGC TTATTTTATTTGGGG TERM 4785 3766452 - 3766485 + G 85 -3.1 -5.40464 | gap 1, overlap 3766463 TTACTACGTGCCCGC CGATGAGATCCTGACG CAT CG-CGTGATCTGGTCG TTTTTCTTTATGGTG TERM 4786 3766771 - 3766784 + G 75 -6.7 -4.43477 | ATATGTGGCGTGTTG GTCCA GCTG TGGAC TTTTGGTTCGCTACC TERM 4787 3767054 - 3767076 + G 74 -2 -5.10497 | gap 1, overlap 3767043 CTGCCGCTGCCACGC GCCT-GCGT CTCTCA ACGTTAGGC TTTTTTCAGTACATT TERM 4788 3767150 - 3767140 - g 72 -4.6 -4.59773 | TTTTATGGTGAAAAA CCGG GTG CCGA TAAGATGGTGACTTT TERM 4789 3767157 - 3767169 + G 82 -7.7 -4.46112 | opp_overlap 3767156 3767157 GGGTGCCGATAAGAT GGTGA CTT TCACC TTTATTTGGGTGGCG rarD 3766348 - 3767238 + | hypothetical protein TERM 4790 3767291 - 3767262 - f 100 -9.4 -5.04385 | opp_overlap 3767264, overlap 3767249 TATATTCTGAAAAAA TATGCCGACTCT TGTATG AGAGTGGGCATA TTGCCATGCTGACAG yigG 3767297 - 3767707 + | hypothetical protein yigF 3767721 - 3768101 + | hypothetical protein TERM 4791 3768100 - 3768138 + T 78 -6.1 -4.57341 | gap 2, opp_overlap 3768106 3768108, overlap 3768105 3768106 3768107 ATACCTGGAGCCTTT GAATAACAGGTGGCTTAGC CAG GCTAAGCCACC-GCC-TTC TTTTTACAACCAGTT TERM 4792 3768105 - 3768135 + T 81 -8.2 -4.40561 | opp_overlap 3768106 3768108, overlap 3768100 3768106 3768107 TGGAGCCTTTGAATA ACAGGTGGCTTAGC CAG GCTAAGCCACCGCC TTCTTTTTACAACCA TERM 4793 3768133 - 3768106 - T 100 -15 -3.62046 | gap 1, opp_overlap 3768105 3768100 3768106 3768107, overlap 3768108 GGAGCCTTTGAATAA CAGGTGGCTTAGC CAG GCTAAGCCACC-G CCTTCTTTTTACAAC TERM 4794 3768106 - 3768134 + T 79 -11.7 -3.23855 | opp_overlap 3768106 3768108, overlap 3768105 3768100 3768107 GGAGCCTTTGAATAA CAGGTGGCTTAGC CAG GCTAAGCCACCGC CTTCTTTTTACAACC TERM 4795 3768107 - 3768133 + T 90 -15.2 -2.53831 | opp_overlap 3768106 3768108, overlap 3768106 3768105 3768100 GAGCCTTTGAATAAC AGGTGGCTTAGC CAG GCTAAGCCACCG CCTTCTTTTTACAAC TERM 4796 3768132 - 3768108 - T 100 -18.7 -3.38991 | opp_overlap 3768107 3768106 3768105 3768100, overlap 3768106 AGCCTTTGAATAACA GGTGGCTTAGC CAG GCTAAGCCACC GCCTTCTTTTTACAA corA 3769092 - 3768142 - | magnesium/nickel/cobalt transporter CorA TERM 4797 3769455 - 3769442 - H 86 -3.1 -5.70829 | overlap 3769431 AACAGGATAAAAAAA TCCCA CATC TAGGA CCTATAATGGCGCAT yigE 3769462 - 3769800 + | hypothetical protein TERM 4798 3769800 - 3769829 + T 89 -9.3 -4.59109 | overlap 3769802 TCAGCAGAAGGTGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 4799 3769802 - 3769827 + T 100 -16.3 -3.90762 | overlap 3769800 AGCAGAAGGTGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_3684 3771157 - 3769811 - | IS4 orf TERM 4800 3771147 - 3771172 + g 73 -9.1 -3.61398 | opp_overlap 3771147 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 4801 3771172 - 3771147 - G 100 -9.8 -5.61596 | opp_overlap 3771147 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC TERM 4802 3771467 - 3771481 + G 79 -3.5 -5.06414 | GTTGGGATTAATAAA CATGG GAATG CCGTG TTTTTGTTGAGCCAG SFV_3685 3771233 - 3771664 + | hypothetical protein TERM 4803 3771797 - 3771785 - T 77 -9.1 -3.9392 | TTTTAGGCCAAATAA GGTGC GCA GCACC GCCATCCGGCAACGT uvrD 3773974 - 3771812 - | DNA-dependent helicase II TERM 4804 3773924 - 3773902 - G 71 -9 -3.44051 | opp_overlap 3773910 CCGCCAGCACCAGAA GGTTGCTGCG TGG CGCGGCCACC GCTTCGCGTTGTTTG TERM 4805 3773910 - 3773932 + g 82 -9 -4.1523 | opp_overlap 3773902 ACCAGAAGGTTGCTG CGTGGCGCGG CCA CCGCTTCGCG TTGTTTGTCATTAAG yigB 3774774 - 3774058 - | flavin mononucleotide phosphatase xerC 3775670 - 3774774 - | site-specific tyrosine recombinase XerC TERM 4806 3775086 - 3775055 - G 79 -5 -4.96848 | overlap 3775030 3775080 GTTTCGACAGAAAAA GCGCGTCGTCTTCG CTAC CAAACAGGTCGCGC AAATCAAGCCAGTGC TERM 4807 3775316 - 3775332 + g 72 -5.1 -4.57569 | opp_overlap 3775301 CCAGCAGCCGATTCA TATCGTC GAC GTCGATA TTTTTCGGCAGATGA yigA 3776374 - 3775667 - | hypothetical protein TERM 4808 3776256 - 3776219 - G 74 -10.6 -3.16564 | gap 1, opp_overlap 3776218 3776219, overlap 3776224 GTGCCACTCGACCAA CGAAACG-GTGCCGCGT ACCGG ATGCGGCACACGTATCG CTTCTACTGCGCGCG TERM 4809 3776219 - 3776256 + g 76 -12.8 -2.64099 | gap 1, opp_overlap 3776219 3776224, overlap 3776218 GTGCCACTCGACCAA CGAAACG-GTGCCGCGT ACCGG ATGCGGCACACGTATCG CTTCTACTGCGCGCG TERM 4810 3776251 - 3776224 - G 72 -7.7 -3.95852 | gap 1, opp_overlap 3776219 3776218, overlap 3776219 ACTCGACCAACGAAA CG-GTGCCGCGT ACCGG ATGCGGCACACG TATCGCTTCTACTGC dapF 3777195 - 3776371 - | diaminopimelate epimerase yifL 3777435 - 3777232 - | putative outer membrane lipoprotein SFV_3692 3777624 - 3778775 + | hypothetical protein SFV_3693 3778797 - 3779102 + | hypothetical protein SFV_3694 3779446 - 3780408 + | hypothetical protein cyaY 3780456 - 3780776 + | frataxin-like protein cyaA 3783362 - 3780816 - | adenylate cyclase TERM 4811 3781200 - 3781220 + g 75 -6.8 -4.30987 | overlap 3781196 GTGATTGGTTTCAAC CTGCACTG ACAAG CCGTGCAG TTTGTTATGCGAAAT TERM 4812 3781355 - 3781339 - G 71 -9.3 -3.53811 | CGCAGCGCCTTGAAA CGCCCGG TTT CCTGGCG GGTGCTGGAAAGGCG TERM 4813 3782863 - 3782886 + g 76 -7.4 -4.2828 | TCGCCCCCCAGGCTG CCGCTTTCAT TATG ACGGAAGCGG TTTTCATCAATCAGG hemC 3783728 - 3784690 + | porphobilinogen deaminase hemD 3784687 - 3785427 + | uroporphyrinogen-III synthase TERM 4814 3785703 - 3785692 - g 70 -3.6 -4.62336 | ACGGCATTGCAAAAA GCCC AGGA GAGC CAAAAAGCCGAGCTG TERM 4815 3785836 - 3785811 - g 70 -3.9 -4.68103 | overlap 3785813 TGAAGTCCAACAAAA GATCGCCACCA TTTC CGGCAGCGATG CTAAAACCTGGCTGC hemX 3785449 - 3786666 + | putative uroporphyrinogen III C-methyltransferase hemY 3786669 - 3787865 + | putative protoheme IX biogenesis protein TERM 4816 3787945 - 3787920 - f 100 -11.9 -5.64274 | TGATGCATAAAAAAA CGCCTGCTC TTATTACG GAGCAGGCG TTAAAACAGGTCTGT TERM 4817 3788427 - 3788437 + F 72 -2.6 -4.91459 | opp_overlap 3788427 CATTTTCTGGATAAA TAAA TAA TTTA TTTTTGTCACTATTA SFV_3701 3788727 - 3789092 + | insertion sequence 2 OrfA protein SFV_3702 3789116 - 3789955 + | IS2 ORF2 TERM 4818 3790102 - 3790120 + T 84 -5.2 -5.37865 | GGCAATCAACCGCAG GCGGCT TCCAAAT GGCCGC TTTTTTACTTATTCA aslB 3791360 - 3790125 - | putative arylsulfatase regulator TERM 4819 3791498 - 3791483 - R 100 -11.8 -5.8901 | ACAGAAAACAAAAAA CCCCGC CGAA GCGGGG TTCAAAATTGGTCGG yifK 3793431 - 3792046 - | putative transport protein YifK TERM 4820 3792468 - 3792484 + g 72 -5.7 -4.58395 | AAACTTTTGCCATTG CCGCCGG TAA CTGACGG TTTTTCGCCAGTGCG TERM 4821 3792939 - 3792959 + g 71 -10.5 -2.87051 | opp_overlap 3792939, overlap 3792938 CCAGGCCAATGACAA TCATCACGA TAA TCGTGGTGA CTTTGATCATCGCGA TERM 4822 3793105 - 3793095 - G 77 -8.2 -4.08164 | opp_overlap 3793094 3793091 AAAACTGGACATAAA CGCC AAT GGCG GTGATTTCTGAGATC TERM 4823 3793460 - 3793472 + r 72 -9.1 -3.57039 | GTGTTTGCATGCTTT CCGGT GTT ACCGG TTATCGTTATGGGTA TERM 4824 3793604 - 3793579 - R 71 -9.7 -3.18764 | opp_overlap 3793580, overlap 3793577 3793575 ATAAAAAAGCAGACA GGCGACGAAGT GACC ACTCCGTCGCT TTACAAAGAGAGGAA TERM 4825 3793580 - 3793603 + r 82 -11 -3.53012 | opp_overlap 3793579 3793577 3793575 TAAAAAAGCAGACAG GCGACGAAGT GACC ACTCCGTCGC TTTACAAAGAGAGGA wecG 3794362 - 3793622 - | putative UDP-N-acetyl-D-mannosaminuronic acid transferase TERM 4826 3794082 - 3794117 + g 77 -6 -4.68593 | gap 1, opp_overlap 3794101, overlap 3794085 TCTTCCCAGAGATCG GCACCGGCA-ACGCGGG AAA CCTGCGCCTGCGGGTAC TTTTTACGTACTGAA wecF 3795717 - 3794365 - | putative entero common antigen polymerase TERM 4827 3795184 - 3795169 - G 71 -3.2 -4.77036 | GCTGACGAGGAAAAA CAGCCA CGCT TTGCTG TCCTGGCGCAGAAAG TERM 4828 3795252 - 3795235 - G 71 -3.3 -4.80167 | overlap 3795238 GATGAAAAAGTAAAA GAAGCGT TTTA ACGCCAC GCCGGAGACTTCACT TERM 4829 3795249 - 3795238 - G 74 -5.8 -4.47007 | overlap 3795235 GAAAAAGTAAAAGAA GCGT TTTA ACGC CACGCCGGAGACTTC yifM 3796793 - 3795714 - | 4-alpha-L-fucosyltransferase TERM 4830 3796324 - 3796339 + g 83 -10.4 -4.07568 | overlap 3796300 TACAGCAGTTCTCCC CGCACC TTTG GGTGCG TTTTGGCAAAAAAGC TERM 4831 3796438 - 3796424 - G 71 -2.1 -5.02074 | GTAGTGGGTAAAAAA GCTTA TATCT CAAGC CACTGGAAAGCTCAT TERM 4832 3796520 - 3796485 - G 85 -6.8 -4.8667 | overlap 3796474 GATATGCCAGAAAAA CTGGCTGGGCTTAATG CCAC CACTCAGCAGAGCCAG CCACAGTGTGGGATT TERM 4833 3796741 - 3796731 - G 72 -4.6 -4.65895 | overlap 3796740 CGCGTCATTGAAAAA CCGC AAA ACGG TTCGGTTATGGTGAG wzxE 3798040 - 3796790 - | putative cytochrome TERM 4834 3797926 - 3797906 - G 76 -11.1 -3.36289 | GAGCACGGTAATCAA CTGGCGGAA ATT TGCCGCCAG CCCAAGCCCCGCCGG wecE 3799172 - 3798042 - | TDP-4-oxo-6-deoxy-D-glucose transaminase TERM 4835 3799073 - 3799045 - G 81 -9.6 -4.07568 | gap 1, opp_overlap 3799026, overlap 3799026 TTGGCGCTGCCAAAA CGTTGCT-CCAGC CACT GCTGGCAGCGACG GGTAAAACCGCCATC wecD 3799851 - 3799177 - | TDP-fucosamine acetyltransferase TERM 4836 3799452 - 3799465 + g 76 -8.1 -4.19258 | opp_overlap 3799451 3799450 ATTGATGATCAAAGG TGCCG CGCA CGGCA TTTTCAATCCACTGT rffH 3800710 - 3799829 - | glucose-1-phosphate thymidylyltransferase TERM 4837 3800458 - 3800444 - G 72 -7.8 -3.97947 | opp_overlap 3800449 TTCACCGATGATAAA GGCCTG CGC CAGACC GTCCGGGCTGGGCTG rffG 3801796 - 3800729 - | dTDP-glucose 4,6-dehydratase TERM 4838 3801274 - 3801304 + g 74 -7.5 -4.07885 | gap 1 GACCGTAGGTCCGCA GCCAGGCGCGCACC AGAT GGT-CGCTGCTGGC TTTTGACGCGGAATA wecC 3803058 - 3801796 - | UDP-N-acetyl-D-mannosamine dehydrogenase TERM 4839 3802403 - 3802388 - G 70 -5.4 -4.31692 | AATTCATTAGCAAAA GCGATA TTCA CATCGC GGAAGCTGTTTTCGG TERM 4840 3802880 - 3802865 - G 76 -3.9 -5.00616 | CTCGCTCGTAAAAAA CCGCC TTCTAC GGCAG TTTTTACTACGCTCG wecB 3804185 - 3803055 - | UDP-N-acetyl glucosamine-2-epimerase TERM 4841 3803494 - 3803512 + g 78 -8.9 -4.15044 | TGCGTGGTGGCGATG TCTGCCA GCGCG TGGCAGA TTTCTTCAAAGCCAC TERM 4842 3804230 - 3804205 - R 100 -18.3 -3.61517 | opp_overlap 3804202 3804225 3804229 ATTCTCTTCGAATAA GCGGCGAGCGC CTTT GCGCTCACCGC AGCAGTGTTGCTATT wzzE 3805287 - 3804241 - | lipopolysaccharide biosynthesis protein WzzE TERM 4843 3804873 - 3804893 + g 72 -11.1 -3.02144 | opp_overlap 3804877 3804878, overlap 3804878 TAATCATTTCATCCA GCAACGCCG CAT CGGCTTTGC TGTTGCCCACCATCC TERM 4844 3804878 - 3804888 + g 74 -8.2 -3.92324 | opp_overlap 3804877 3804878, overlap 3804873 ATTTCATCCAGCAAC GCCG CAT CGGC TTTGCTGTTGCCCAC rfe 3806402 - 3805299 - | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase TERM 4845 3805336 - 3805346 + g 70 -6.8 -4.11751 | overlap 3805344 CCACCACGATTTCTA CGCA GTC TGCG TTTTACGCGCTTAAT TERM 4846 3805961 - 3805923 - G 89 -14 -3.14881 | opp_overlap 3805931, overlap 3805931 3805958 CAACCCGCCCAGCAA GCCATCAATGCCATCAAC CAT GTTGAACGCATTAATGGC CGCCCAGACGGCAAA TERM 4847 3806382 - 3806366 - G 100 -8.1 -5.7946 | TCGTGAATAAAAAAA TACTGAT GAG ATCAGTA CTCACTGTCAGTAAA SFV_3721 3806632 - 3806414 - | hypothetical protein TERM 4848 3806627 - 3806598 - G 95 -13.7 -3.38183 | opp_overlap 3806603, overlap 3806603 TTACAGATATAAAAG CAAAACGCCACGT AAAC ACGTGGCGTTTTT GGCATAAGACAAATT TERM 4849 3806603 - 3806622 + g 100 -13.6 -4.62069 | opp_overlap 3806598 3806603 GATATAAAAGCAAAA CGCCACGT AAAC ACGTGGCG TTTTTGGCATAAGAC TERM 4850 3806622 - 3806603 - G 100 -13.6 -4.75518 | opp_overlap 3806603, overlap 3806598 GATATAAAAGCAAAA CGCCACGT AAAC ACGTGGCG TTTTTGGCATAAGAC rho 3807973 - 3806642 - | transcription termination factor Rho TERM 4851 3807498 - 3807510 + g 70 -4.1 -4.63486 | TGCAGCGGGGTTAAG TTCTC AAA GAGGA TTTTGTTGCGGGCGT trxA 3808662 - 3808228 - | thioredoxin TERM 4852 3809436 - 3809418 - g 100 -7.4 -5.5604 | overlap 3809419 CTAACGAAGAAAAAA TGCGTTTG CTG CAAACGCT GATCGAAGAAGAGTG TERM 4853 3809435 - 3809419 - g 86 -10.9 -3.91997 | overlap 3809418 TAACGAAGAAAAAAT GCGTTTG CTG CAAACGC TGATCGAAGAAGAGT rhlB 3808688 - 3809953 + | ATP-dependent RNA helicase RhlB TERM 4854 3810892 - 3810909 + G 93 -9.9 -4.57569 | TGTTCCCGAGTGGTC TGGCGAT CCTG ATCGCCA TTTTTACCGAACTGA TERM 4855 3811553 - 3811529 - g 70 -6.5 -4.2558 | gap 1 TATTGCTCAGGAAAA CCAGTGG-CA GAGCTA TGTCCACTGG CCGCTGGAAGTGCAT gppA 3810087 - 3811571 + | guanosine pentaphosphate phosphohydrolase TERM 4856 3811581 - 3811612 + T 72 -10.8 -2.76911 | opp_overlap 3811579 3811580, overlap 3811580 3811576 3811576 3811572 CATTAATGAGTAAGT GCCGGATGCGATGC TGAC GCATCTTCTCCGGC CTTGATTATTTCCCT rep 3813654 - 3811618 - | ATP-dependent DNA helicase Rep TERM 4857 3811782 - 3811797 + g 81 -10.4 -3.90922 | CCGGGCGCACCAGTT CGCCGT ACTG ACGGCG TTCTTTACACAGCGT TERM 4858 3812101 - 3812128 + g 84 -10.6 -3.72592 | GCCTTCCAGCATCTC CGTCATCCAGCT AAAC AGTTGGTTGACG TTCTTCATGCGCATT TERM 4859 3812995 - 3813017 + g 71 -2.7 -4.77165 | gap 1 GTTGGTGTCCTGATA TTCGTCCACC AGCA GGTAG-CGAA TTTTGTTCTGCCAGC ppiC 3813726 - 3814007 + | peptidyl-prolyl cis-trans isomerase C (rotamase C) TERM 4860 3814038 - 3814010 - Tf 100 -16.1 -3.24825 | overlap 3814011 3814014 GTACCGTAACTAATA GCAAGGCCTTCTC CGG GAGAAGGCCTTGA ACTCTGAATCGCTAT TERM 4861 3814037 - 3814011 - Tf 100 -19.6 -2.54574 | overlap 3814010 3814014 TACCGTAACTAATAG CAAGGCCTTCTC CGG GAGAAGGCCTTG AACTCTGAATCGCTA TERM 4862 3814034 - 3814014 - Tf 100 -15.5 -3.42147 | overlap 3814011 3814010 CGTAACTAATAGCAA GGCCTTCTC CGG GAGAAGGCC TTGAACTCTGAATCG ilvC 3815663 - 3814053 - | ketol-acid reductoisomerase TERM 4863 3815712 - 3815727 + Gr 87 -10.4 -4.07568 | opp_overlap 3815700 3815701 3815721 AAACCTTCCTGCATC TGGCGG AAAG CCGCCA TTTTGGCCGCAGCGC TERM 4864 3815786 - 3815818 + Gr 72 -7.6 -3.86897 | CTCTCACGGCAGATT CAGCGCCTGGAAGA AGATC TCGGCCAGCCGCTG TTTGTGCGCGATAAC TERM 4865 3816530 - 3816514 - gR 95 -9.4 -4.82901 | opp_overlap 3816514 3816526, overlap 3816526 GTGTGCGCAGAAAAA GCGGCT ACATG AGCCGC TAATTGAGGCATTCT ilvY 3815609 - 3816568 + | DNA-binding transcriptional regulator IlvY ilvA 3818109 - 3816565 - | threonine dehydratase TERM 4866 3817842 - 3817825 - G 71 -3.3 -4.77165 | gap 1, opp_overlap 3817827, overlap 3817827 CCGCGCAGAAGAAAA CGCGACGC CCT GCG-CGTG GTTACCCGCAGAAGC TERM 4867 3817865 - 3817875 + g 79 -2.4 -5.30348 | GCAGAAGCAGTGATC ACGC CGT GCGC TTTTTGTTCTTCCGT ilvD 3819962 - 3818112 - | dihydroxy-acid dehydratase TERM 4868 3820016 - 3819995 - R 86 -11.6 -3.53012 | opp_overlap 3819995 TGTCTGTCTCGTAAA TGGGACGG TGCGTG CCGTCCCA TTTTTTGTATTTATT TERM 4869 3819995 - 3820016 + r 100 -12.3 -5.61913 | opp_overlap 3819995 TGTCTGTCTCGTAAA TGGGACGGT GCGT GCCGTCCCA TTTTTTGTATTTATT ilvE 3820881 - 3820027 - | branched-chain amino acid aminotransferase TERM 4870 3820969 - 3820986 + r 72 -5.5 -4.3767 | overlap 3820971 CATTTGTATATTCCT TTTGCGC TCAG GCGCGGA TTTGTTGTGATGTGG ilvM 3821239 - 3820976 - | acetolactate synthase 2 regulatory subunit ilvG 3822882 - 3821236 - | acetolactate synthase 2 catalytic subunit TERM 4871 3822079 - 3822068 - G 70 -5.8 -4.25283 | ACCCGGTCATCAAAA CGTG CACC CACG GCGATCAGCAGGTCA TERM 4872 3822971 - 3822998 + H 79 -11.2 -3.45366 | opp_overlap 3822973, overlap 3822973 3822996 TTTTAAGGTCAAAAA AACCCCCGGACC TTTC GGTGCGGGGGTC TTAGTTCGTTAAGGC TERM 4873 3822996 - 3822973 - H 100 -13.8 -5.47399 | opp_overlap 3822971 3822973 TTAAGGTCAAAAAAA CCCCCGGACC TTTC GGTGCGGGGG TCTTAGTTCGTTAAG TERM 4874 3822973 - 3822996 + H 86 -13.8 -3.29727 | opp_overlap 3822973, overlap 3822971 TTAAGGTCAAAAAAA CCCCCGGACC TTTC GGTGCGGGGG TCTTAGTTCGTTAAG TERM 4875 3823220 - 3823243 + H 76 -4 -5.00616 | opp_overlap 3823226 TTTTTATGATGGCTT TAATAATTTC AATA GAAATTGTTG TTTTTTAAAAAGAAA yifB 3823471 - 3824991 + | putative ATP-dependent protease TERM 4876 3824997 - 3825009 + T 85 -6.2 -5.15167 | opp_overlap 3824997, overlap 3824991 ACTGACATAAAAAAA GGGC ATTTC GCCC TTTTTATTAATCGTC TERM 4877 3825009 - 3824997 - T 93 -6.9 -5.72616 | opp_overlap 3824997 3824991 ACTGACATAAAAAAA GGGCA TTT CGCCC TTTTTATTAATCGTC yifE 3825354 - 3825016 - | hypothetical protein TERM 4878 3826115 - 3826098 - g 72 -9.9 -3.31144 | TTCCCATTCTGACAA CCAGTTC TGCT GAACTGG CACAGCAACAGATTG yifDA 3825473 - 3826312 + | transcriptional regulator HdfR TERM 4879 3826400 - 3826381 - f 100 -10.8 -6.02914 | opp_overlap 3826381 3826378 TTCAGATAAAAAAAA TCCTTAGC TTTC GCTAAGGA TGATTTCTGGCAGGG TERM 4880 3826381 - 3826400 + F 73 -10.8 -3.00946 | opp_overlap 3826381, overlap 3826378 TTCAGATAAAAAAAA TCCTTAGC TTTC GCTAAGGA TGATTTCTGGCAGGG TERM 4881 3826753 - 3826774 + F 74 -8.7 -3.91196 | GCTAATTCTGTTTTA TCAGACCGC TTCT GCGTTCTGA TTTAATCTGTATCAG TERM 4882 3829242 - 3829254 + F 72 -6.2 -4.2354 | AGGTTCTTTTTCACT CCCC TCGCC GGGG TTCTTTTCGCCTTTC TERM 4883 3830022 - 3830035 + F 75 -6.7 -4.41177 | overlap 3829987 GTATCAGTCTGCTTC GCAAG ACGC CTTGC TTTTCACTTTCTATC yieP 3832116 - 3832808 + | hypothetical protein yieO 3832855 - 3834258 + | putative transport protein rbsR 3835207 - 3834224 - | transcriptional repressor RbsR TERM 4884 3835196 - 3835180 - G 72 -7.9 -3.91897 | overlap 3835181 CTGTTGAGGTAGAAA CGCCCGC CAA ACGGGCA ACATCTTTCATTGTA rbsK 3836164 - 3835220 - | ribokinase TERM 4885 3836193 - 3836169 - R 90 -9.9 -4.38712 | opp_overlap 3836165 3836162, overlap 3836170 GGGATGTCCATAAAA TGCGCCACCGT GTT AGGGTGGCGCG TGCCCTGCTTTTCTT TERM 4886 3836192 - 3836170 - R 83 -13.4 -3.22906 | opp_overlap 3836165 3836162, overlap 3836169 GGATGTCCATAAAAT GCGCCACCGT GTT AGGGTGGCGC GTGCCCTGCTTTTCT rbsC 3838151 - 3837186 - | ribose ABC transporter permease protein insB 3839836 - 3839333 - | IS1 ORF2 TERM 4887 3840372 - 3840383 + r 71 -7.2 -4.07568 | GACATTTAACGCTGC GCCC GAGA GGGC TTTTACGCCCGGGAA rbsD 3840864 - 3840445 - | D-ribose pyranase TERM 4888 3840506 - 3840476 - G 75 -11.3 -3.00907 | gap 1, overlap 3840468 3840466 3840471 GCACAGAGAATGATA TTCGCATACGGAGA ACAT TCTCCGC-TGCGAA TTACCGCCTGACTTT TERM 4889 3841023 - 3840999 - R 100 -9.3 -5.50723 | CCATGAAAACAAAAA CGCCCCCTT ATGAAGA AAGGAGGCG TCTGGCGTTAGATTT trkD 3842899 - 3841031 - | potassium transport protein Kup TERM 4890 3842758 - 3842747 - G 76 -3.6 -4.88736 | overlap 3842753 3842756 GATCAGCGATAAAAA GCCA AACA CGGC ATCGCGTTCAAGGCC TERM 4891 3842971 - 3842957 - R 79 -4.2 -5.24129 | overlap 3842958 TTGGCCCACAAAAAA GCGCAC AGT ATGCAC GATTAACGGCAAAAT TERM 4892 3843046 - 3843075 + r 89 -9.3 -4.59109 | opp_overlap 3843047, overlap 3843048 CCCCCCCTTTGAGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 4893 3843074 - 3843047 - R 81 -12.8 -3.14132 | opp_overlap 3843046 3843048 CCCCCCTTTGAGTAA TGCCAGTCAGTT AAGC AACTGACTGGCT CTTTTTCGGGGCTGT TERM 4894 3843048 - 3843073 + r 100 -16.3 -3.90762 | opp_overlap 3843047, overlap 3843046 CCCCCTTTGAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_3754 3844403 - 3843057 - | IS4 orf TERM 4895 3844421 - 3844390 - G 100 -13.9 -4.4017 | opp_overlap 3844393 CCAATGTGCATAAAA GAATCCGGAAACA AGTGAG CGTTTCCGGATTC TTACACAGCCACTGG TERM 4896 3844393 - 3844418 + g 73 -9.1 -3.61398 | opp_overlap 3844390 ATGTGCATAAAAGAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC glmS 3846335 - 3844506 - | D-fructose-6-phosphate amidotransferase TERM 4897 3845504 - 3845538 + g 93 -6.4 -5.27923 | gap 1, opp_overlap 3845503 3845507, overlap 3845507 CCAGCTCGCTTAAAT CAACCTGACCGTGGC TGATGC GCC-CGGTAAGGGTG TTTTTTATCGCGTTC glmU 3847867 - 3846497 - | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase TERM 4898 3847105 - 3847092 - G 70 -5.2 -4.34402 | overlap 3847093 CCGCGCAGATCAAAA CGCG CCGGAT CGCG CAGCATAACGCCTGC TERM 4899 3847117 - 3847129 + g 84 -7.7 -4.62302 | CGCGCAGCATAACGC CTGCT AAC AGCAG TTTTTCAGCCTGTTC TERM 4900 3848170 - 3848201 + r 73 -10.2 -3.08032 | opp_overlap 3848175, overlap 3848175 GGGTCAACGCGTAAA AAAAAGCCAGCCTG TTTC CAGACTGGCTTTTG TGCTTTTCAAGCCGG TERM 4901 3848175 - 3848196 + r 93 -10.1 -4.67635 | opp_overlap 3848175, overlap 3848170 AACGCGTAAAAAAAA GCCAGCCTG TTTC CAGACTGGC TTTTGTGCTTTTCAA TERM 4902 3848196 - 3848175 - R 100 -12.3 -5.77853 | opp_overlap 3848175 3848170 AACGCGTAAAAAAAA GCCAGCCTG TTTC CAGACTGGC TTTTGTGCTTTTCAA atpC 3848638 - 3848219 - | F0F1 ATP synthase subunit epsilon atpD 3850041 - 3848659 - | F0F1 ATP synthase subunit beta TERM 4903 3849808 - 3849831 + g 76 -7.4 -4.18018 | CGCTTTACCTACCGG GACTTCGATC GGGT GTTCGAGGTC TTTTACATCCAGACC atpG 3850931 - 3850068 - | F0F1 ATP synthase subunit gamma TERM 4904 3850756 - 3850789 + g 100 -14.7 -3.91897 | opp_overlap 3850756 TTATATTCCAGATTA CCGTGTGCAAGGTGA CCAA TCACTTTGCGCATGG TTTCTGCATAAGGAC atpA 3852523 - 3850982 - | F0F1 ATP synthase subunit alpha TERM 4905 3851961 - 3851997 + g 78 -8.7 -4.26188 | overlap 3851962 CATTTGATACCGGAA TCGCGCTGGTTGATGAT GGC ATCGATAGCCAGTGCGG TTTTACCTGTCTGAC TERM 4906 3851962 - 3851996 + g 70 -10 -3.15231 | overlap 3851961 ATTTGATACCGGAAT CGCGCTGGTTGATGAT GGC ATCGATAGCCAGTGCG GTTTTACCTGTCTGA atpH 3853069 - 3852536 - | F0F1 ATP synthase subunit delta TERM 4907 3852895 - 3852939 + g 72 -5.1 -4.50686 | gap 3, opp_overlap 3852890 3852893, overlap 3852890 3852896 CTGCGATAAACGACT CGGC-GAGCGT-T-TCTGGCGC AAGC GCGCCAGAGAGAAGCTCTGCCA TTTGTTCGTTTTTGG atpF 3853554 - 3853084 - | F0F1 ATP synthase subunit B TERM 4908 3853428 - 3853449 + g 70 -3.7 -4.67353 | CTGCGGAAGCAAGGC CGTCAGCAA TTTC TTTTTGACG TTTTTCGATGGCTGC TERM 4909 3853455 - 3853483 + g 73 -11.8 -2.77899 | gap 1, overlap 3853452 CTTTTTGACGTTTTT CG-ATGGCTGCCA TTAA TGGCGGCCATACG TACTTCATGCAGAAC atpE 3853855 - 3853616 - | F0F1 ATP synthase subunit C atpB 3854717 - 3853902 - | F0F1 ATP synthase subunit A TERM 4910 3854404 - 3854384 - G 74 -11.1 -3.17527 | overlap 3854371 3854382 GATTCATCAGGAATA CCCAGACGA AGA TCGTCAGGG CCAGCGGAGCAATCA atpI 3855106 - 3854726 - | F0F1 ATP synthase subunit I TERM 4911 3855635 - 3855598 - R 86 -5.2 -5.52384 | gap 3, overlap 3855626 TGCTTACCAAAAAAA GCCACGTT-A-TCTTGTTG ATG CAA-AAGAGTGAACGTGGC GTTAAATGTAACCAG gidB 3856346 - 3855723 - | glucose-inhibited division protein B TERM 4912 3856371 - 3856398 + r 100 -18.6 -4.77759 | overlap 3856395 3856396 CTGTTCTTGATGCGT TGCCTGGTAAGC GGGT GCTTACCAGGCA TTTTTAATGCGTTAT gidA 3858218 - 3856410 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 4913 3857433 - 3857450 + g 70 -6.3 -4.21607 | gap 1, overlap 3857436 CTGATGCTGATTTCT GTC-TGCG AAG CGCATGAC TTTGTCTTCGATCGA mioC 3859121 - 3858678 - | flavodoxin asnC 3859669 - 3859211 - | DNA-binding transcriptional regulator AsnC TERM 4914 3860130 - 3860075 - g 100 -17.1 -2.75074 | gap 2 CTTAGGGCAACACGA CTTCAGCGCGGGCGAAGGGCTGTACAC GCAC ATGAA-AGCCCTTCGCCC-CGATGAAG ACCGTCTTTCTCCGT asnA 3859821 - 3860813 + | asparagine synthetase AsnA yieM 3862269 - 3860818 - | hypothetical protein TERM 4915 3861903 - 3861891 - G 75 -4.8 -4.84017 | AACGCTGGAGAAAAA GCGT GTGTA ACGC TGAAGTTATTGTGCT yieN 3863783 - 3862263 - | regulatory ATPase RavA TERM 4916 3863535 - 3863516 - G 71 -2.9 -4.75404 | gap 1 AAAGGGGACCAAAAA CTTCTTCC GGCGT GGA-GAAG CGGGTCATCAGATAT TERM 4917 3863924 - 3863899 - H 72 -9.1 -3.61398 | opp_overlap 3863899 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT TERM 4918 3863899 - 3863924 + H 100 -9.8 -5.61596 | opp_overlap 3863899 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT SFV_3773 3863914 - 3865260 + | IS4 orf TERM 4919 3865271 - 3865242 - f 89 -9.3 -4.59109 | opp_overlap 3865243, overlap 3865244 3865265 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACTGCCGACCGGTG TERM 4920 3865243 - 3865270 + F 81 -12.8 -3.14211 | opp_overlap 3865242 3865244 3865265 ACAGCCCCGAAAAAG AGCCAGTCAGTT GCTT AACTGACTGGCA TTACTGCCGACCGGT TERM 4921 3865269 - 3865244 - f 100 -16.3 -3.90762 | opp_overlap 3865243, overlap 3865242 3865265 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACTGCCGACCGG TERM 4922 3865510 - 3865493 - f 71 -7.1 -4.05402 | opp_overlap 3865492, overlap 3865491 TTTGAATCAAAAATA CACTTAT TAAT ATAAGTG ATGATTCATGGTAAA lpfA 3865552 - 3866124 + | putative major fimbrial subunit SFV_3775 3867795 - 3866890 - | insertion element IS2 transposase InsD SFV_3776 3868118 - 3867753 - | insertion sequence 2 OrfA protein TERM 4923 3869032 - 3869042 + G 77 -8.2 -4.10164 | opp_overlap 3869024 3869031, overlap 3869031 GACAGTACGCAAATT CGCG GCG CGCG TTTGTATACTGATAA TERM 4924 3869484 - 3869500 + G 70 -4.3 -4.48299 | overlap 3869486 TGTCGGTAAAGATCT TGGCGCT TTG GGCGCAA TTTCTTTCGATGTGA TERM 4925 3869984 - 3870006 + G 78 -10.6 -3.49232 | overlap 3869983 TTCCTTTATCGGGCT GGTGGGGTAA TAG TTACGCCACC TATTCTGTTTCGCAA lpfC 3868267 - 3870786 + | putative long polar fimbriae SFV_3778 3870797 - 3871870 + | putative fimbrial protein pstS 3872118 - 3873158 + | phosphate transporter subunit pstC 3873245 - 3874204 + | phosphate transporter permease subunit pstA 3874204 - 3875094 + | phosphate transporter permease subunit pstB 3875186 - 3875959 + | phosphate transporter subunit phoU 3875974 - 3876699 + | transcriptional regulator PhoU TERM 4926 3876709 - 3876739 + F 95 -14.3 -3.63054 | opp_overlap 3876709 3876713, overlap 3876713 AAATAATTCACCAGA CAAATCCCAATAA CTTAA TTATTGGGATTTG TTATATATAACTTTA TERM 4927 3876739 - 3876709 - f 93 -15 -2.85021 | opp_overlap 3876709 3876713, overlap 3876713 AAATAATTCACCAGA CAAATCCCAATAAC TTA ATTATTGGGATTTG TTATATATAACTTTA TERM 4928 3876735 - 3876713 - f 83 -10 -4.09822 | opp_overlap 3876713 3876709, overlap 3876709 AATTCACCAGACAAA TCCCAATAAC TTA ATTATTGGGA TTTGTTATATATAAC TERM 4929 3876713 - 3876735 + F 86 -9.3 -4.42974 | opp_overlap 3876709 3876713, overlap 3876709 AATTCACCAGACAAA TCCCAATAA CTTAA TTATTGGGA TTTGTTATATATAAC TERM 4930 3876923 - 3876954 + F 100 -5.1 -6.5058 | opp_overlap 3876922 3876932 ATTCGCAGGCAAAAC CTGACATAACCAG AGAATA CTGGTGAAGTCGG TTTTTTTTTGTTTAT bglG 3876986 - 3877822 + | transcriptional antiterminator BglG bglF 3878019 - 3879833 + | beta-glucoside-specific PTS system components IIABC bglB 3879852 - 3881246 + | phospho-beta-glucosidase B; cryptic TERM 4931 3881270 - 3881295 + F 78 -12.7 -2.64572 | opp_overlap 3881267, overlap 3881268 3881264 3881261 GCACCTTAATTATCG TCGCATTCAGA ACAG TCTGGATGCGA TACGTTAATTCTTTC TERM 4932 3881464 - 3881449 - g 79 -4.7 -4.9218 | GAGTTATTAGAAAAA GCGTT AAGAGA AACGC AAAGCGAACTCAAAA TERM 4933 3881644 - 3881628 - g 74 -2.1 -5.16206 | opp_overlap 3881629, overlap 3881629 AAATGAAGAGAAAAA TGCCAGT GAG ACAGGCT CGATTTATTCTTCCA TERM 4934 3882062 - 3882050 - g 72 -7.7 -3.92659 | overlap 3882044 CGCCGAAAATTGAAA TCCAG ATG CTGGA CTGGAAAACGCAGCG yieC 3881332 - 3882948 + | putative receptor protein TERM 4935 3882997 - 3883020 + F 87 -11 -3.97947 | opp_overlap 3882990, overlap 3883000 TAAAAATTGCTGCTT TAACGCTGGC TATT GCCAGCGGTA TTTCTGCTCAGTGGG TERM 4936 3883000 - 3883017 + F 78 -12.7 -2.7439 | opp_overlap 3882990, overlap 3882997 AAATTGCTGCTTTAA CGCTGGC TATT GCCAGCG GTATTTCTGCTCAGT yieL 3883050 - 3884150 + | putative xylanase yieK 3884152 - 3884874 + | putative 6-phosphogluconolactonase TERM 4937 3884915 - 3884888 - T 72 -6.3 -4.2204 | gap 1, opp_overlap 3884888 3884886 AAGCTGAAGAAATAA GGCCGGA-TGTA TGAAT TACGCTCCGGCC TGTTCTCATTATTTA yieJ 3885352 - 3884936 - | hypothetical protein SFV_3791 3886333 - 3885527 - | ISSfl4 ORF3 SFV_3792 3886443 - 3886309 - | ISSfl4 ORF3 SFV_3793 3886810 - 3886463 - | ISSfl4 ORF2 SFV_3794 3887481 - 3886807 - | ISSfl4 ORF1 TERM 4938 3887145 - 3887133 - G 73 -9.1 -3.62046 | opp_overlap 3887125 CGATCCGGGCAACAA CAGCC CCA GGCTG TAATGCCTGCTTAGC TERM 4939 3887485 - 3887512 + r 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG yieI 3888122 - 3887649 - | putative inner membrane protein TERM 4940 3888008 - 3888020 + g 74 -7.7 -4.08394 | opp_overlap 3888008 GTATTATTACCAAAA GAACC AGC GGTTC TTTTGCGAAGAATAT TERM 4941 3888020 - 3888008 - G 78 -7.7 -4.32034 | opp_overlap 3888008 GTATTATTACCAAAA GAACC AGC GGTTC TTTTGCGAAGAATAT yieH 3888845 - 3888189 - | 6-phosphogluconate phosphatase yieG 3889010 - 3890347 + | putative membrane / transport protein TERM 4942 3890392 - 3890368 - T 88 -8.6 -4.74132 | gap 1, opp_overlap 3890368, overlap 3890354 ATAGCGCATTAAAAA CCCGCCATGCA TGAT TAC-TGGCGGG TTTTTTATTTAGATC TERM 4943 3890368 - 3890392 + T 93 -6.4 -5.65927 | gap 1, opp_overlap 3890354 3890368 ATAGCGCATTAAAAA CCCGCCATGCA TGAT TAC-TGGCGGG TTTTTTATTTAGATC yieF 3890967 - 3890401 - | hypothetical protein TERM 4944 3890575 - 3890565 - G 72 -6.8 -4.2828 | TTGCATCGAGGAAAA CCAG AAT CTGG CGCAGGTGATACTGA yieE 3891738 - 3890989 - | hypothetical protein SFV_3800 3892273 - 3892575 + | IS600 ORF1 SFV_3801 3892716 - 3893429 + | IS600 ORF2 SFV_3802 3894028 - 3893426 - | putative transcriptional regulator LYSR-type yidY 3895271 - 3894096 - | multidrug efflux system protein MdtL TERM 4945 3894528 - 3894495 - G 73 -9 -3.60475 | gap 1, overlap 3894482 AATTCCCAGCGCAAA TGGCGTCGAGAATGA AAAGG TCATGCT-GACGCCA GCGGTCAGCGCCATA TERM 4946 3894695 - 3894667 - G 74 -2.3 -5.14563 | opp_overlap 3894675, overlap 3894675 CGGCTGAGGAAAAAA CGATTAAGCAGCG ACT CGCTATTTTCTCG TGGTTTGTCCGAAGC TERM 4947 3895393 - 3895371 - R 83 -13.5 -3.12351 | opp_overlap 3895374, overlap 3895374 TTTCCTGAGAGGCAA GAAGCCAGC GAATG GCTGGCTTC TTGAAGGATTTAGCC TERM 4948 3895390 - 3895374 - R 76 -9.4 -3.70773 | opp_overlap 3895374, overlap 3895371 CCTGAGAGGCAAGAA GCCAGC GAATG GCTGGC TTCTTGAAGGATTTA TERM 4949 3895374 - 3895390 + r 72 -9.4 -3.64283 | opp_overlap 3895374 3895371 CCTGAGAGGCAAGAA GCCAGC GAATG GCTGGC TTCTTGAAGGATTTA tnaB 3896650 - 3895403 - | tryptophan permease TnaB TERM 4950 3896547 - 3896537 - G 75 -4.6 -4.85599 | GGCACCCCAGAAAAA CCAG GCA CCGG CAAGATCAACAGGTA tnaA 3898156 - 3896741 - | tryptophanase TERM 4951 3897507 - 3897523 + g 78 -8 -4.35524 | ATATCGTATTTCTTC GCGATG CTGTA CATCGC TTTTAAGTTTGCCAG TERM 4952 3898390 - 3898408 + r 73 -10.4 -3.06009 | AATTAAGGGCGGTGA TCGACAAT CTT ATTGTCGA TATTGAACCATTTTG TERM 4953 3898684 - 3898649 - R 86 -12 -3.53712 | gap 1, opp_overlap 3898654 3898676, overlap 3898646 3898650 3898674 3898676 AGTGCTAACAATGAA GCGAAGCCGCA-TCTGA CAG TCAGAATACGGCTTCGT AAGCGCGGTTACTTA TERM 4954 3898683 - 3898650 - R 90 -15.5 -2.71745 | gap 1, opp_overlap 3898654 3898676, overlap 3898646 3898649 3898674 3898676 GTGCTAACAATGAAG CGAAGCCGCA-TCTGA CAG TCAGAATACGGCTTCG TAAGCGCGGTTACTT trmE 3900057 - 3898693 - | tRNA modification GTPase TrmE TERM 4955 3899035 - 3899049 + g 76 -7.8 -4.20516 | overlap 3899025 CATTCCCAGCGTTTC GCCGGT GAT ATCGGC TTTATTGCGTACCAC TERM 4956 3900119 - 3900138 + r 79 -9.2 -4.17048 | opp_overlap 3900120, overlap 3900120 CTACGAAAAGAAAAA AGGCGGTC AACT GACCGCCC TTATTTTAGCGAAAA TERM 4957 3900137 - 3900120 - R 100 -12.7 -5.83211 | opp_overlap 3900120 3900119 TACGAAAAGAAAAAA GGCGGTC AACT GACCGCC CTTATTTTAGCGAAA TERM 4958 3900120 - 3900137 + r 80 -12.7 -3.09908 | opp_overlap 3900120, overlap 3900119 TACGAAAAGAAAAAA GGCGGTC AACT GACCGCC CTTATTTTAGCGAAA yidC 3901758 - 3900163 - | putative inner membrane protein translocase component YidC rnpA 3902359 - 3902033 - | ribonuclease P TERM 4959 3902208 - 3902228 + g 74 -2.6 -5.06816 | gap 1 CGTTTAATCCGATTG CGTTC-ATG GGCG CGTCGAACG TTTTTCTTGGCGACT rpmH 3902549 - 3902409 - | 50S ribosomal protein L34 TERM 4960 3903485 - 3903466 - g 74 -10 -3.54129 | gap 1, opp_overlap 3903465 3903464, overlap 3903437 CACAGGTGGCGCAAA CGCAGC-CG CAA CGTGCTGCG CCTTCTACGCGCTCA TERM 4961 3903627 - 3903596 - g 80 -11.5 -3.30781 | overlap 3903591 3903600 TGAAGGTAAATCTAA CCAACTGGCGCGC GCGGCG GCTCGCCAGGTGG CGGATAACCCTGGCG TERM 4962 3903623 - 3903600 - g 71 -9.5 -3.43217 | overlap 3903596 3903591 GGTAAATCTAACCAA CTGGCGCGC GCGGCG GCTCGCCAG GTGGCGGATAACCCT dnaA 3903225 - 3904556 + | chromosomal replication initiation protein dnaN 3904561 - 3905661 + | DNA polymerase III subunit beta TERM 4963 3905794 - 3905813 + G 73 -9.2 -3.63968 | overlap 3905810 TGGAAGCCATCTATA CGCTCGGC CATG GTCGGGCG TTTCGCAGTTTGCAG TERM 4964 3906219 - 3906179 - g 70 -10.3 -3.1372 | overlap 3906177 GACTCGTTACGAACA GCTACGCCCGTGGGATAAA GAA CTGATCCCGCTGGCGGAGC AAATCAGCACCTGGC recF 3905661 - 3906734 + | recombination protein F TERM 4965 3907995 - 3907981 - g 74 -10 -3.53012 | GGCCTGCCGGGCAAA CTGGCA GAC TGCCAG GAACGCGATCCGGCG TERM 4966 3909104 - 3909132 + G 72 -7.3 -4.15044 | overlap 3909105 3909108 TGTTCACCACGCTGA TGGGCGACGCCGT AGA ACCGCGTCGTGCG TTTATTGAAGAGAAC TERM 4967 3909108 - 3909128 + G 70 -11.1 -2.75825 | overlap 3909105 3909104 CACCACGCTGATGGG CGACGCCGT AGA ACCGCGTCG TGCGTTTATTGAAGA gyrB 3906763 - 3909177 + | DNA gyrase subunit B TERM 4968 3909339 - 3909309 - f 100 -17 -3.47751 | opp_overlap 3909314, overlap 3909314 GGCAAGAAGCTATAA GAAAAGGGCGGAGA TCA TCTCCGCCCTTTTT ATTTCTGCAATCCGC TERM 4969 3909314 - 3909334 + F 100 -16.9 -5.38054 | opp_overlap 3909309 3909314 GAAGCTATAAGAAAA GGGCGGAGA TCA TCTCCGCCC TTTTTATTTCTGCAA TERM 4970 3909334 - 3909314 - f 100 -16.9 -4.80959 | opp_overlap 3909314, overlap 3909309 GAAGCTATAAGAAAA GGGCGGAGA TCA TCTCCGCCC TTTTTATTTCTGCAA yidB 3909417 - 3909815 + | hypothetical protein TERM 4971 3910021 - 3910009 - g 72 -5.5 -4.56775 | ACCCGCCGTTAAAAA TGCGA TTG CCGCA GCTCGCGCCCGTGGC yidA 3909929 - 3910741 + | sugar phosphatase TERM 4972 3910739 - 3910789 + T 100 -16.4 -3.57418 | gap 1, opp_overlap 3910742, overlap 3910742 AAGTATGTGCTGAAT TAATCTGTGGGCGGGCAAACAGC ATAAAC GC-GTTTGCCCGCTTACTGATTA TTGGTTTACTGCATA TERM 4973 3910742 - 3910786 + T 100 -13.7 -3.91541 | gap 1, opp_overlap 3910742, overlap 3910739 TATGTGCTGAATTAA TCTGTGGGCGGGCAAACAGC ATAAAC GC-GTTTGCCCGCTTACTGA TTATTGGTTTACTGC TERM 4974 3910786 - 3910742 - T 73 -10 -3.34013 | gap 1, opp_overlap 3910739 3910742 TATGTGCTGAATTAA TCTGTGGGCGGGCAAACAGCA TAAA CGC-GTTTGCCCGCTTACTGA TTATTGGTTTACTGC SFV_3816 3911548 - 3910787 - | hypothetical protein dgoK 3912407 - 3913285 + | 2-oxo-3-deoxygalactonate kinase dgoT 3915124 - 3916443 + | D-galactonate transport protein yidS 3917504 - 3916404 - | putative oxidoreductase TERM 4975 3916454 - 3916488 + g 85 -10.1 -4.15222 | opp_overlap 3916462 GATAATCTTTCAACT GTGGAATATGCGC CATACCACT GCGCATAATCCAC TTTCTTAAAGCCGGT TERM 4976 3916498 - 3916519 + g 95 -9.4 -4.87807 | opp_overlap 3916498 ATCCACTTTCTTAAA GCCGGTGC GGTCAG GCATCGGC TTTTTACTATCTTGC TERM 4977 3917389 - 3917403 + g 73 -4.2 -4.82901 | overlap 3917387 3917386 TTGCTGAAACCTTCA GTACCG CAC TGGTGC TTTTTATCCAGCGCG TERM 4978 3918419 - 3918386 - g 81 -9.5 -4.0098 | gap 1, opp_overlap 3918408 GTGGAACGGAAACAA CCCTACCCG-CGCCAC CGC GTGGCGTCGTGCAGCG ACGTTTAACCTTTAC yidR 3917605 - 3918825 + | hypothetical protein yidQ 3919234 - 3918827 - | hypothetical protein ibpA 3919464 - 3919877 + | heat shock protein IbpA TERM 4979 3920264 - 3920235 - g 88 -2.1 -5.57729 | opp_overlap 3920235 3920248 3920258, overlap 3920258 AAAGAAGAGAAAAAA TGGCTGCATCA AGGGCTTA TGAATCAGCCA TTTAGCCTGAGTTTT ibpB 3919989 - 3920417 + | heat shock chaperone IbpB TERM 4980 3920433 - 3920453 + F 100 -14.7 -5.90231 | CTAGCTATTCTCTTT GCCCCGCCA TTC TGGTGGGGC TTTTTTTGTCTTTCT yidE 3920613 - 3922274 + | hypothetical protein yidP 3922987 - 3922313 - | putative transcriptional regulator TERM 4981 3923073 - 3923059 - H 82 -2.9 -5.47821 | opp_overlap 3923059, overlap 3923049 ATCGATTGAAAAAAA TCTTT TTTTT AAAGA TGTGTTCGATGCTGT TERM 4982 3924142 - 3924152 + G 75 -6.8 -4.43208 | CTCAAAAATCTTTGG TGCC GTG GGCA TTTCTTTAGCGATGT TERM 4983 3924586 - 3924575 - g 70 -5.8 -4.22041 | AAAGCCGAATACAAA GCCT CGCG AGGC CAAACCACCGCTGCA glvC 3923075 - 3924895 + | phosphotransferase system IIBC component TERM 4984 3925713 - 3925745 + T 87 -11.3 -3.90922 | overlap 3925715 3925716 GAGTTACGTTAATTG TGTGGACTGGCATCC GTT GGGTGCTGGTCCGTA TTCTTTAGCACGGCT TERM 4985 3925715 - 3925743 + T 86 -11.7 -3.54488 | overlap 3925713 3925716 GTTACGTTAATTGTG TGGACTGGCATCC GTT GGGTGCTGGTCCG TATTCTTTAGCACGG TERM 4986 3925716 - 3925742 + T 81 -13 -2.72371 | overlap 3925715 3925713 TTACGTTAATTGTGT GGACTGGCATCC GTT GGGTGCTGGTCC GTATTCTTTAGCACG yidL 3926599 - 3925706 - | putative ARAC-type regulatory protein yidK 3926766 - 3928481 + | putative symporter YidK yidJ 3928516 - 3929958 + | putative sulfatase TERM 4987 3929957 - 3929947 - T 85 -5.4 -5.31275 | GTGGAGGAGAAAAAA CAGA AAT TCTG ACGATAATGCCCGCT TERM 4988 3930024 - 3930010 - T 72 -9.2 -3.53811 | TTCAGGCTGCTTAAA CCAGCG AAC CGCCGG TCAGGAAGGAAAAAA yidI 3930418 - 3930005 - | hypothetical protein TERM 4989 3930152 - 3930137 - G 70 -6.1 -4.17556 | CATACCGCCAATAAA TGCGC AAAGTA GCGCA GCAATGGCCAGTGCG yidH 3930527 - 3930874 + | hypothetical protein yidG 3930864 - 3931226 + | hypothetical protein TERM 4990 3931264 - 3931305 + G 75 -4.4 -4.86033 | opp_overlap 3931267 3931285, overlap 3931266 TGAAGAGGACAGGCA TAAGCTGGTTGTAGAGTA CAAGGA TGCTCTGCAACCTGCCGA TTTTTATCACAATTT TERM 4991 3931593 - 3931627 + G 90 -7.7 -4.92757 | opp_overlap 3931593, overlap 3931576 ACGCTCGGCAGGAGA CGCCAGACAGCGTGC TTTGT GCGGGCTATCAGGCG TTTTATTCTTACTCC yidF 3931223 - 3931720 + | putative transcriptional regulator TERM 4992 3931776 - 3931733 - T 79 -10.3 -3.53444 | gap 2 TGACGTGCGCTTAAA CGGGCTGCCCCTGATGCGACA TCCG CGTCGC--CAGCGGCAGCCAG CACAGCACGATCAAC emrD 3932918 - 3931728 - | multidrug resistance protein D TERM 4993 3932164 - 3932145 - G 80 -5.6 -5.02074 | overlap 3932147 CCATGCCCCAAAAAA TGCCGCCG GAAT CGGCAGAA TAAACAAAATACTGA TERM 4994 3933078 - 3933059 - H 74 -3.5 -4.93288 | overlap 3933060 AATATGTAAACAAAA GCGGCAA TAAATG TTGCCGG GAGGGATGGTAGGGC TERM 4995 3933148 - 3933169 + H 100 -17.3 -3.74747 | opp_overlap 3933148 ACGCTAAATATAAAA GGGGAGCGG TTAC CCGCTCCCC TTTGGTGCGACTTGA TERM 4996 3933169 - 3933148 - H 100 -17.3 -4.79451 | opp_overlap 3933148 ACGCTAAATATAAAA GGGGAGCGG TTAC CCGCTCCCC TTTGGTGCGACTTGA TERM 4997 3933695 - 3933710 + H 100 -8.2 -5.60689 | opp_overlap 3933695 AGGCGGCTGACGAAA CCTCGC TCCG GCGGGG TTTTTTGTTATCTGC TERM 4998 3933972 - 3933996 + H 100 -10.7 -4.98531 | gap 1, opp_overlap 3933972 3933987 CACACGATTCCAAAA CCCCGC-CGG CGCAAA CCGGGCGGGG TTTTTCGTTTAAGCA TERM 4999 3933996 - 3933972 - H 89 -11.4 -4.16279 | gap 1, opp_overlap 3933972, overlap 3933987 CACACGATTCCAAAA CCCCGC-CGGC GCAA ACCGGGCGGGG TTTTTCGTTTAAGCA ilvB 3934050 - 3935738 + | acetolactate synthase catalytic subunit TERM 5000 3935901 - 3935890 - g 74 -5.8 -4.45485 | AGGACAGCGACAAAA GCCA TATC TGGC TACTGGTCAATGACG ilvN 3935742 - 3936032 + | acetolactate synthase 1 regulatory subunit TERM 5001 3936055 - 3936079 + F 100 -12.2 -6.06723 | opp_overlap 3936055 3936054 3936052 AGGCTTGAACAACAT CGCGCTTATC GTTAA GGTAAGCGCG TTTTTTTTTACCCGC uhpA 3936107 - 3936697 + | DNA-binding transcriptional activator UhpA TERM 5002 3937761 - 3937775 + G 72 -7 -4.15788 | overlap 3937773 GTCGCTGGGCGTTTA CGACGC GGT GCGCCG TTTGTTAGGACGGTT uhpB 3936694 - 3938199 + | sensory histidine kinase UhpB TERM 5003 3939246 - 3939258 + G 73 -9.1 -3.65581 | TGCCAGCTACGTGAT GCAGG CAA CCTGC TTCTTCACCATTGGT uhpC 3938206 - 3939528 + | regulatory protein UhpC TERM 5004 3939705 - 3939683 - g 71 -9.1 -3.53012 | GCTGGCTTTCCTAAA CCAGGTTCG CAAGC CGACCCTGG ACCTTCCGCTCGAAG TERM 5005 3940233 - 3940247 + G 70 -6.4 -4.20368 | overlap 3940222 TACCTGTTCGATGGC CATGTC ATC GGCATG TTTATCTTCCCGTCG uhpT 3939666 - 3941057 + | sugar phosphate antiporter TERM 5006 3941076 - 3941094 + T 100 -9.5 -5.95946 | TAACTGGTGACTTTT GTCCGGC ATGAC GCCGGGC TTTTTTTATTATTCC yicP 3942869 - 3941103 - | cryptic adenine deaminase TERM 5007 3942848 - 3942870 + g 77 -2.8 -5.09245 | TAATGTGATGAAATT TATGGTTAAT GGA ATTATTCATA TTTTTCTCATTTTGA yicO 3942966 - 3944378 + | hypothetical protein yicN 3944431 - 3944883 + | hypothetical protein TERM 5008 3945127 - 3945117 - g 77 -8.2 -4.09864 | ATTTATTGCCGAAAA CCGC GGC GCGG ATGCCATCACCCGAC TERM 5009 3945292 - 3945308 + G 75 -5.1 -4.67607 | overlap 3945293 ACCGTGACCGCCTTT GTGGCAA TGT TTGCCAG TTTGTTTATTACCCA TERM 5010 3945515 - 3945550 + G 72 -6.8 -4.20368 | gap 1, overlap 3945511 3945484 3945542 TGGTACCGCCGCGTA CGGTGCCGAAGG-CGCT GTC GGTGATCTTCGGCGCGG TTTCTATTGCGCTGG nepI 3945094 - 3946284 + | ribonucleoside transporter SFV_3848 3946873 - 3947175 + | IS600 ORF1 SFV_3849 3947316 - 3948029 + | IS600 ORF2 TERM 5011 3948262 - 3948215 - T 82 -12.9 -2.8547 | opp_overlap 3948226 3948229, overlap 3948226 3948229 AGGCTGTATATTATA CTGGCTGTAAACAACATGGCC ACCAAG GACCATGTTGTTTACAGCATA CCCTTGTTGCAAATG TERM 5012 3948251 - 3948226 - T 75 -9.8 -3.54129 | opp_overlap 3948226 3948229, overlap 3948215 3948229 TATACTGGCTGTAAA CAACATGGCC ACCAAG GACCATGTTG TTTACAGCATACCCT iutA 3950484 - 3948286 - | putative ferric siderophore receptor iucD 3951824 - 3950487 - | lysine:N6-hydroxylase TERM 5013 3951723 - 3951709 - G 71 -2.8 -4.7373 | GGATGCCAGGAAAAA TGAGGA TGT TCGTCA AAGAAGAGACAGTTC iucC 3953563 - 3951821 - | siderophore biosynthesis protein TERM 5014 3951986 - 3951976 - G 70 -4.6 -4.4727 | overlap 3951978 TGAAGAGTGAGAAAA GCGC AAA ACGC TCTGCCATTTGTGGA TERM 5015 3953607 - 3953587 - R 86 -11.9 -3.61715 | GACCTCCGTGAAGAA GTGATGACG ATC CGCCATCAC CATGCGCGAGCGCTT iucB 3954510 - 3953563 - | siderophore biosynthesis protein iucA 3956235 - 3954511 - | siderophore biosynthesis protein TERM 5016 3955710 - 3955699 - G 70 -5.8 -4.19817 | overlap 3955700 TTTATCCACCGAAAA CCAC CGCA GTGG GAAGTGGGGTGCCAT TERM 5017 3956102 - 3956123 + g 81 -13.1 -2.5547 | overlap 3956101 3956109 AAATGGAGCGATTTC TGCTCATCC AGCG GGATGAGCA ATTCGTCTGGCGGGT TERM 5018 3956195 - 3956214 + g 82 -7.8 -4.56597 | overlap 3956196 TTCAGGAAGCACTGC GCAGCCAC ATCT GTGGCTGG TTTTTCAGAGGGCAG TERM 5019 3956196 - 3956213 + g 80 -11.3 -3.33744 | overlap 3956195 TCAGGAAGCACTGCG CAGCCAC ATCT GTGGCTG GTTTTTCAGAGGGCA TERM 5020 3956313 - 3956262 - H 72 -5.6 -4.39166 | gap 1, opp_overlap 3956265 3956292, overlap 3956265 3956274 3956299 TCCCACACAGTAAAA TAATAACAATTAT-GTCAATAATGA TTC TCATTATCAACAATAAATGTTATTG TCAGATAAATTAATT TERM 5021 3956310 - 3956265 - H 74 -7.3 -4.30909 | gap 1, opp_overlap 3956265 3956292, overlap 3956262 3956274 3956299 CACACAGTAAAATAA TAACAATTAT-GTCAATAATGA TTC TCATTATCAACAATAAATGTTA TTGTCAGATAAATTA imm 3956371 - 3957564 + | putative membrane transport protein shiE 3958446 - 3957937 - | hypothetical protein TERM 5022 3958089 - 3958113 + g 75 -5.2 -4.64992 | gap 1, opp_overlap 3958095 TGATGACGAGTTGAG GATG-AAGAAA TAAG TTTCTTTCATC TTTATGTTTTTTGGG insB 3958560 - 3959063 + | IS1 ORF2 TERM 5023 3959287 - 3959310 + F 100 -7.4 -6.24157 | overlap 3959286 ATGGGGTATTCCCTC CGCCGGCA CTATGTGT TGCTGGCG TTTTTTTTTATCAAT SFV_3858 3961535 - 3961900 + | insertion sequence 2 OrfA protein SFV_3859 3961858 - 3962763 + | insertion element IS2 transposase InsD SFV_3860 3962738 - 3963193 + | insertion sequence 2 OrfA protein SFV_3861 3963151 - 3964056 + | insertion element IS2 transposase InsD TERM 5024 3964619 - 3964646 + F 86 -12.1 -3.61398 | TTGAGAGTTCATCGT TCGCGTCCATT AATACA GATGGACGCGA TTGTTGCCAGACAGG SFV_3862 3964826 - 3965152 + | IS629 ORF1 TERM 5025 3965468 - 3965456 - g 70 -4.8 -4.56597 | TCTCCGGGGTAAAAA GGTC CGTAC GACC ATCAGCCGGAAAGCC SFV_3863 3965388 - 3966035 + | IS629 ORF2 SFV_3864 3966363 - 3966106 - | hypothetical protein SFV_3865 3966825 - 3967124 + | IS3 ORF1 SFV_3866 3967121 - 3967513 + | IS3 ORF2 SFV_3867 3967485 - 3967976 + | IS3 ORF2 shiB 3968434 - 3967973 - | hypothetical protein TERM 5026 3968491 - 3968507 + r 70 -9.5 -3.03159 | opp_overlap 3968483 3968487 3968486 TATAAAACCACCGTA TGGACAA CTA TTGTCCA TATTAAAAAAGTTGG TERM 5027 3968882 - 3968862 - R 87 -9.7 -4.31397 | ACTTTCAGAAAATAA CCCCAGG GTAATCA CCTGGGG AAGGAACACAGTGTT shiA 3969992 - 3968949 - | hypothetical protein TERM 5028 3970358 - 3970334 - R 100 -12.9 -5.35721 | ATATAATAACAAAAA TCCTCCAGCCT TGT AGGCCAGAGGA TAAAATACTTAATTG intC 3971588 - 3970404 - | putative integrase TERM 5029 3971310 - 3971320 + g 100 -3.2 -5.61689 | ATTTTTCAGACTCAT TTGC TGC GCGA TTTTTTCTTCCTTTT TERM 5030 3973474 - 3973461 - H 76 -5.2 -4.83615 | GATGCGGCAGAAAAA GCGC AGAACA GCGC CACGATTAGCATCAT yicI 3973761 - 3975986 + | alpha-xylosidase YicI TERM 5031 3976028 - 3976000 - T 88 -14.5 -3.08312 | opp_overlap 3975998 3975997 AATCTATTGACGGAA TGCCGGGTACGTC TGA GTCGTACCCGGCG AGATTGATGTTTACC yicH 3977748 - 3976039 - | hypothetical protein TERM 5032 3977835 - 3977864 + r 81 -13 -2.63644 | gap 1, overlap 3977832 3977831 3977862 GTGAAAGAGGTGAGA CT-GCGGCGGTAA TTATC TTACCGCCGCCAG TGAATTACTGTTTTT TERM 5033 3977862 - 3977874 + r 73 -4.1 -4.91109 | opp_overlap 3977872, overlap 3977835 3977832 3977831 TTATCTTACCGCCGC CAGTG AAT TACTG TTTTTCTGGTGGGAA yicE 3979260 - 3977869 - | putative transport protein TERM 5034 3977992 - 3977979 - G 72 -6.7 -4.24002 | overlap 3977982 GGGCAAACTGCAAAA TCAGC GGCT GCTGA GACACGCCCAGACCA TERM 5035 3978327 - 3978339 + g 76 -9.1 -3.83026 | overlap 3978309 CGTTTGCCAGCACGC CGCCT TTC AGGCG TTTCATGTACAGCGG TERM 5036 3979326 - 3979315 - H 73 -4.4 -4.80455 | GACCGAAAGAGAAAA GCAA ACGT TTGC CACATCCTCATCTAA TERM 5037 3979876 - 3979866 - g 72 -6.8 -4.18018 | opp_overlap 3979866 GTTGGTGATGCAAAA TGCC ATT GGCA TTGGTATGGCTAGCC gltS 3979540 - 3980745 + | glutamate transport protein TERM 5038 3980753 - 3980776 + T 83 -9.5 -4.14392 | opp_overlap 3980754, overlap 3980746 3980754 CCGGTTAACCGATGA AGCGGCGGT CTTCTC ACCGCCGCC TTTTACGCATTCGAG TERM 5039 3980775 - 3980754 - T 83 -13 -3.21912 | opp_overlap 3980746 3980753 3980754 CGGTTAACCGATGAA GCGGCGGT CTTCTC ACCGCCGC CTTTTACGCATTCGA TERM 5040 3980754 - 3980775 + T 82 -13 -3.08314 | opp_overlap 3980754, overlap 3980746 3980753 CGGTTAACCGATGAA GCGGCGGT CTTCTC ACCGCCGC CTTTTACGCATTCGA recG 3982860 - 3980779 - | ATP-dependent DNA helicase RecG TERM 5041 3981043 - 3981062 + g 90 -10 -4.36914 | overlap 3981033 TTGCAGGCGAATTTG CGCCGTTT TAGA AAGCGGCG TTTTGTAGAGCAGCA spoU 3983555 - 3982866 - | tRNA guanosine-2'-O-methyltransferase spoT 3985670 - 3983562 - | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase TERM 5042 3985114 - 3985132 + g 70 -5.2 -4.371 | opp_overlap 3985114, overlap 3985108 TACAGCGCCTCAAAA CCCAGCTC TTC GAGTTCGG TTTTAATGTGGTGGA rpoZ 3985964 - 3985689 - | DNA-directed RNA polymerase subunit omega gmk 3986699 - 3986019 - | guanylate kinase TERM 5043 3986587 - 3986575 - G 82 -9.1 -4.15044 | opp_overlap 3986571 3986575 TGGGTTTTTAATAAA GCCTG AAT CAGGC TGGATTTACCCGCGC TERM 5044 3986819 - 3986800 - gH 70 -6.4 -4.18488 | ATTTACTGCAATAAA GACGATTC TCAG GAAGCGTC CTCGCAGACTCCGTT SFV_3882 3986776 - 3987039 + | hypothetical protein TERM 5045 3987521 - 3987557 + GT 79 -4.4 -4.9725 | gap 2, overlap 3987522 GCTGGCCTGATGATG C-GCCAG-GGGAATAGCG ACA CGCTAAACTCACTGGCTG TTTTTGTCTGGGCAT TERM 5046 3987522 - 3987555 + GT 76 -8.1 -4.11141 | gap 1, overlap 3987521 CTGGCCTGATGATGC GCCAG-GGGAATAGCG ACA CGCTAAACTCACTGGC TGTTTTTGTCTGGGC TERM 5047 3988559 - 3988534 - gT 95 -11.9 -3.89354 | TGCGCAAATCAAGAA GCTGGGCAG TTGGCTGG CTGCCCAGC AGATCACAGGTTTTG ligB 3986894 - 3988582 + | NAD-dependent DNA ligase LigB yicG 3989196 - 3988579 - | hypothetical protein dinD 3990323 - 3989487 - | DNA-damage-inducible protein D TERM 5048 3990107 - 3990138 + g 100 -16 -2.63079 | opp_overlap 3990104 3990133, overlap 3990104 3990104 3990133 CATTTGAGCCAATTT TGACCATATCGAGG ATCT CCTCGAAATGGTCA TCAATTGTGTGACCA yicC 3991396 - 3990533 - | hypothetical protein rph 3991523 - 3992239 + | ribonuclease PH TERM 5049 3992247 - 3992264 + F 100 -11.3 -6.06529 | CAAACTGATTTTTAA GGCGACT GATG AGTCGCC TTTTTTTTGTCTGTA pyrE 3992305 - 3992946 + | orotate phosphoribosyltransferase TERM 5050 3992979 - 3992952 - T 90 -9.8 -4.41348 | opp_overlap 3992951 3992949 3992954, overlap 3992953 3992954 TGGCGTTTAAAGAAA CTCGCCGGATGA AAAG TCATCCGGCGTC ATATTACTGCAACTG TERM 5051 3992978 - 3992953 - T 83 -13.3 -3.24488 | opp_overlap 3992951 3992949 3992954, overlap 3992952 3992954 GGCGTTTAAAGAAAC TCGCCGGATGA AAAG TCATCCGGCGT CATATTACTGCAACT TERM 5052 3992977 - 3992954 - T 95 -16.8 -2.54371 | opp_overlap 3992951 3992949 3992954, overlap 3992953 3992952 GCGTTTAAAGAAACT CGCCGGATGA AAAG TCATCCGGCG TCATATTACTGCAAC TERM 5053 3992954 - 3992977 + T 100 -16.8 -2.77523 | opp_overlap 3992954 3992953 3992952, overlap 3992951 3992949 GCGTTTAAAGAAACT CGCCGGATGA AAAG TCATCCGGCG TCATATTACTGCAAC slmA 3993579 - 3992983 - | nucleoid occlusion protein TERM 5054 3993633 - 3993653 + r 76 -11.9 -2.50817 | overlap 3993632 3993630 3993628 GCACCCACGCTATGA CCGCAAACG AAA TGTTTGCGG CTATGTTATGACGTT dut 3994141 - 3993686 - | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 5055 3993812 - 3993784 - G 77 -3 -5.08601 | opp_overlap 3993788, overlap 3993785 3993788 CTACCGGAACAAAAA TCATCTGGGCGA TGCGT TCGCCAGGTTGA ATGGTGAAGCTGTCC dfp 3995342 - 3994122 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase radC 3995553 - 3996182 + | DNA repair protein RadC TERM 5056 3996195 - 3996208 + F 72 -6.7 -4.2074 | overlap 3996192 TAACCCGCTATGCGC GATCC TTCG GGATC TTTGTCTGTTCGGGA TERM 5057 3996779 - 3996755 - g 70 -3.6 -4.62872 | gap 1, opp_overlap 3996755 ACTAAGCCGGAAAAA CTGGAACTGAA AAAA TTC-GATCCAG TTGTTCGTCAGCACG rpmG 3996656 - 3996823 + | 50S ribosomal protein L33 TERM 5058 3996838 - 3996873 + F 100 -16.4 -2.90194 | opp_overlap 3996841 3996848, overlap 3996841 3996848 ATTCTCGCTTTGATG TAACGAAAAACCTCGC TCCG GCGGGGTTTTTTGTTA TCTGCTTGCCCCCAT TERM 5059 3996841 - 3996870 + F 93 -13.7 -3.59946 | opp_overlap 3996841 3996848, overlap 3996838 3996848 CTCGCTTTGATGTAA CGAAAAACCTCGC TCCG GCGGGGTTTTTTG TTATCTGCTTGCCCC TERM 5060 3996863 - 3996848 - f 78 -6 -4.88407 | opp_overlap 3996841 3996838 3996848, overlap 3996841 TGATGTAACGAAAAA CCTCGC TCCG GCGGGG TTTTTTGTTATCTGC TERM 5061 3996848 - 3996863 + F 100 -8.2 -5.60689 | opp_overlap 3996848 3996841, overlap 3996841 3996838 TGATGTAACGAAAAA CCTCGC TCCG GCGGGG TTTTTTGTTATCTGC mutM 3996921 - 3997730 + | formamidopyrimidine-DNA glycosylase coaD 3998248 - 3997769 - | phosphopantetheine adenylyltransferase kdtA 3999533 - 3998256 - | 3-deoxy-D-manno-octulosonic-acid transferase TERM 5062 3998386 - 3998396 + g 70 -6.8 -4.08945 | opp_overlap 3998386 GCGTCGGTGAGTAAA GAGG AAA CCTC TTTTGCAAGCGTAGT TERM 5063 3998912 - 3998937 + g 75 -5.3 -4.61482 | overlap 3998913 CAGAAATATCGAATT TCAGGCTACCG GTAA CGGTTACCTGG TTATTTTTTGCGCCC SFV_3897 3999786 - 3999568 - | putative IS1 encoded protein insB 3999861 - 4000364 + | IS1 ORF2 waaQ 4000758 - 4001780 + | lipopolysaccharide core biosynthesis protein waaG 4001777 - 4002901 + | LPS alpha1,3-glucosyltransferase TERM 5064 4003502 - 4003522 + G 77 -3.3 -5.10461 | AGGTCGTTGGCGCGA TAAAGATCT TAT AGGGCTTTA TTTTTCTTCAATGAA waaP 4002894 - 4003691 + | lipopolysaccharide core biosynthesis protein waaL 4003734 - 4004741 + | Lipid A-core, surface polymer ligase waaY 4004767 - 4005474 + | lipopolysaccharide core biosynthesis protein waaJ 4005499 - 4006512 + | lipopolysaccharide 1,2-glucosyltransferase waaD 4006521 - 4007663 + | lipopolysaccharide 1,2-N- acetylglucosaminetransferase TERM 5065 4007693 - 4007665 - T 89 -11.1 -4.15222 | opp_overlap 4007671, overlap 4007671 ATTGGTTTGAATAAA TAAAAAGGCCGCA TTA TGCAGCCTTTTTT ATTTTTTACTTGTTT TERM 5066 4007671 - 4007687 + T 100 -7.9 -6.04324 | opp_overlap 4007665 4007671 TTGAATAAATAAAAA GGCCGCA TTA TGCAGCC TTTTTTATTTTTTAC TERM 5067 4007687 - 4007671 - T 100 -10.1 -5.47159 | opp_overlap 4007671, overlap 4007665 TTGAATAAATAAAAA GGCCGCA TTA TGCAGCC TTTTTTATTTTTTAC waaI 4008907 - 4007699 - | lipid A-core, surface polymer ligase TERM 5068 4008406 - 4008395 - G 74 -2.2 -5.10461 | TGCAGGGAATAAAAA GACC ATCG AGTC AGAAATGCTACGGTG waaC 4009896 - 4008904 - | ADP-heptose:LPS heptosyl transferase I waaF 4010946 - 4009900 - | ADP-heptose:LPS heptosyltransferase II TERM 5069 4010845 - 4010818 - G 76 -9.2 -3.7941 | gap 1, opp_overlap 4010818 4010833 CATCCGCGATAATAA TG-GACGGCACCA TGC CGGTGCCATCACA TCGATTATCGCCTGG rfaD 4011888 - 4010956 - | ADP-L-glycero-D-mannoheptose-6-epimerase TERM 5070 4011295 - 4011307 + g 73 -9.1 -3.65522 | overlap 4011284 ACCTTCGAACAGCTT CGGTG ATT CACCG TTATTAAGCTGGGTG TERM 5071 4011467 - 4011483 + g 81 -6.5 -4.77036 | opp_overlap 4011467 AGGAATTTTGAGTAA CCGTAGA CAT TCAACGG TTTTTCGTACTCGCG TERM 5072 4012150 - 4012160 + H 72 -2.6 -4.94703 | ACATTCTGTTAATAT TTAT GAT ATAA TTCTTTTTTTATATT TERM 5073 4012531 - 4012518 - g 82 -2.3 -5.32944 | opp_overlap 4012525 4012526, overlap 4012519 4012527 TCGACAATTAAAAAA CCCAG AGTA CTGGT CACCAGAGTATGTTT htrL 4012177 - 4013049 + | hypothetical protein TERM 5074 4013094 - 4013123 + F 100 -13.1 -4.99035 | opp_overlap 4013094 4013101, overlap 4013101 ATGCCAACTGAGATA GGAAAAATGATGC TTTG GCATCATTTTTTC TTTTTATATCAATGC TERM 5075 4013123 - 4013094 - f 75 -10.9 -2.95091 | opp_overlap 4013094 4013101, overlap 4013101 ATGCCAACTGAGATA GGAAAAATGATGC TTTG GCATCATTTTTTC TTTTTATATCAATGC TERM 5076 4013116 - 4013101 - f 84 -7.6 -4.84527 | opp_overlap 4013094 4013101, overlap 4013094 CTGAGATAGGAAAAA TGATGC TTTG GCATCA TTTTTTCTTTTTATA TERM 5077 4013101 - 4013116 + F 100 -7.6 -5.98675 | opp_overlap 4013101 4013094, overlap 4013094 CTGAGATAGGAAAAA TGATGC TTTG GCATCA TTTTTTCTTTTTATA kbl 4013324 - 4014520 + | 2-amino-3-ketobutyrate coenzyme A ligase TERM 5078 4014707 - 4014690 - g 74 -2.7 -5.00884 | AGTGGTCGCAAAAAA CCATC CCGGTGCC GATGG TCGTGGGCCATGAAT tdh 4014530 - 4015555 + | L-threonine 3-dehydrogenase TERM 5079 4015582 - 4015565 - f 93 -12.7 -3.83155 | opp_overlap 4015565 GATTAACACGAACAA GGGCTGG TATT CCAGCCC TTTTATCTGAGGATA TERM 5080 4015565 - 4015582 + F 100 -12.7 -4.53303 | opp_overlap 4015565 GATTAACACGAACAA GGGCTGG TATT CCAGCCC TTTTATCTGAGGATA yibD 4015797 - 4016636 + | putative regulator insB 4016881 - 4017384 + | IS1 ORF2 yibQ 4018416 - 4017592 - | hypothetical protein TERM 5081 4017779 - 4017799 + g 88 -8.2 -4.59109 | opp_overlap 4017772 CCACGGAACGGATTA CGCGGTGC ATCAG GCACAGCG TTTTTCGGCGGTGTA TERM 5082 4018419 - 4018429 + r 77 -6.8 -4.48987 | opp_overlap 4018416 TAGCGGAAGGCATCG CCAG CAC CTGG TTTTCGTTGTGCGGG yibP 4019814 - 4018555 - | hypothetical protein TERM 5083 4019231 - 4019249 + g 78 -8.9 -4.27474 | overlap 4019216 TTCGCCTGTTGGGCG CGCTGTT CATAT AACAGCG TTTGTTGCTCGCTTT TERM 5084 4019446 - 4019484 + g 75 -5 -4.77036 | overlap 4019448 4019476 GCCCTGACGGAATGC GGCATCCAGTTGTGCGGC GAG GCTGCGCTCCTGGGCGGC TTTTTGCTGCTCCAG TERM 5085 4019777 - 4019728 - G 81 -9.3 -4.07568 | gap 1, opp_overlap 4019730, overlap 4019740 CGCGTGGGCGGAAAA GGCGCACAACAATACGCCAGCGCT AAG AACGCTGGCGTAG-ATGATGGGCC TGATTGCAAACCTGC TERM 5086 4019766 - 4019740 - G 100 -17.4 -3.81022 | opp_overlap 4019730, overlap 4019728 AAAGGCGCACAACAA TACGCCAGCGCT AAG AACGCTGGCGTA GATGATGGGCCTGAT yibO 4021392 - 4019848 - | phosphoglyceromutase insB 4022029 - 4021526 - | IS1 ORF2 SFV_3919 4022104 - 4022385 + | putative IS1 encoded protein yibN 4022413 - 4022844 + | hypothetical protein grxC 4022986 - 4023237 + | glutaredoxin 3 secB 4023300 - 4023767 + | preprotein translocase subunit SecB TERM 5087 4023769 - 4023753 - f 86 -10.9 -3.69283 | overlap 4023745 GAAGGTACTGAAGAA CATCAGG ATG CCTGATG AACCAACGTAATGCT TERM 5088 4023873 - 4023847 - g 78 -8.7 -4.1552 | gap 1 TACCCTGGCAAGAAA TGGCCAC-GAGG TTGT CCTCTGGGGCCA TGACCCTGAACATAT gpsA 4023767 - 4024786 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 5089 4024812 - 4024841 + F 82 -11.5 -3.56987 | gap 1, overlap 4024816 CCTTTGTTACCGCTA TGACCCGGCCCG CGCAGAA CGGGCCGG-TCA TTATCTCATCGTGTG TERM 5090 4024816 - 4024838 + F 82 -13.4 -2.90888 | overlap 4024812 TGTTACCGCTATGAC CCGGCCCG CGCAGAA CGGGCCGG TCATTATCTCATCGT TERM 5091 4025350 - 4025314 - g 70 -3.6 -4.7254 | opp_overlap 4025315 4025336, overlap 4025315 ACCCGGCAGCAAAAA TTGGCCGTGGCATTAT GCTCG ACCACGCCACGGGCAT CGTTGTGGGTGAAAC cysE 4024866 - 4025687 + | serine acetyltransferase yibK 4026213 - 4025740 - | putative tRNA/rRNA methyltransferase YibK TERM 5092 4026237 - 4026215 - R 77 -12 -2.79302 | opp_overlap 4026204 ACGATGTTTAGCATA CTGCCCCC TTAGTGC GGGGGCAG GATAGCAGAAAATTG lldD 4027599 - 4026409 - | L-lactate dehydrogenase TERM 5093 4027483 - 4027501 + g 72 -11 -3.05343 | overlap 4027485 TTCTGACAAATCTTC CACGTTGC GGC GCAGCGTG TATTCAGAATATGCA lldR 4028387 - 4027596 - | DNA-binding transcriptional repressor LldR TERM 5094 4027814 - 4027802 - G 80 -5.5 -5.02074 | TCAGTTGTGAAAAAA CCGGT GGC ACCAG ATACATCCGCTGACG lldP 4030027 - 4028372 - | L-lactate permease TERM 5095 4028971 - 4028992 + g 70 -5.8 -4.1822 | TAGCCTCGCTGACCA CTGGTGGC ATACGG GCAACCAG TTTATTGAGGTACGG TERM 5096 4030298 - 4030273 - R 100 -14.1 -4.86731 | opp_overlap 4030268 4030273 GTCTGGTAAAGAAAA GGGCAATCCTC ATCA GAGAATTGCCC TTAGATTGTTGACCC TERM 5097 4030273 - 4030298 + r 79 -11.9 -3.28745 | opp_overlap 4030273, overlap 4030268 GTCTGGTAAAGAAAA GGGCAATCCTC ATCA GAGAATTGCCC TTAGATTGTTGACCC TERM 5098 4030327 - 4030355 + r 100 -17.6 -3.71917 | CCGGAGCGCCTTATC TTGCCTGATGCG CGTAA CGCATCAGGCAA TTTGGCGTTTGCCCT SFV_3929 4033088 - 4030395 - | hypothetical protein SFV_3930 4034694 - 4033546 - | putative adhesin SFV_3931 4035421 - 4034738 - | putative inner membrane lipoprotein insB 4036315 - 4035812 - | IS1 ORF2 SFV_3933 4036390 - 4036656 + | putative IS1 encoded protein yibL 4037104 - 4036742 - | hypothetical protein SFV_3935 4037388 - 4037597 + | putative cytoplasmic protein TERM 5099 4037594 - 4037612 + T 76 -8.2 -4.10855 | GCAGGTAGAGGGGCA GTAAGCAG ACG TTGCTTAC TTTTGAAAGGCTTTT mtlR 4038196 - 4037609 - | mannitol repressor protein TERM 5100 4037768 - 4037741 - G 82 -12 -3.53012 | gap 1, overlap 4037742 GTCTGCTGGTTCAAA CTGTGGCGGCGGT GGT AACGCCGCCAC-G CAGTGCAGTTCACCA TERM 5101 4037768 - 4037742 - G 77 -12.2 -2.71712 | overlap 4037741 TCTGCTGGTTCAAAC TGTGGCGGCGGT GGT AACGCCGCCACG CAGTGCAGTTCACCA mtlD 4039518 - 4038196 - | mannitol-1-phosphate 5-dehydrogenase TERM 5102 4038961 - 4038979 + gr 74 -7.4 -4.07885 | ATGACCTTTCAGCTG CGTGGTGC CGC GTACCATG TTTTCACAGGCGATG TERM 5103 4039428 - 4039409 - GR 100 -13.6 -3.64703 | opp_overlap 4039404 TTTCCCTCACCCAAA CCCTCTCC GTGA GGAGAGGG TAGGATTGGATTACT mtlA 4041352 - 4039439 - | PTS system, mannitol-specific enzyme IIABC components TERM 5104 4039709 - 4039732 + gH 75 -5.2 -4.59773 | opp_overlap 4039709 TGGCACCGCGATAGA CTCACCCAGA TAAG TCGGGGTCAG TTTTTCACGATCCAG TERM 5105 4039818 - 4039851 + gH 74 -10.4 -3.21276 | overlap 4039816 GCAAAACGAATCGCT TCTTCTTTGGTTGC TGCTTT GCGACCGAGGAAGA TGTTCTCCGCGCCCA TERM 5106 4041613 - 4041628 + H 85 -3.3 -5.50723 | opp_overlap 4041613 AAAATGGCATTTAAA TGTGA GTAATG TCACA TTTTTGTTTTGATGG yibI 4041889 - 4042251 + | hypothetical protein TERM 5107 4042405 - 4042379 - g 74 -7.4 -4.09685 | gap 1 TTTTACCGCGCAAAA GGCAGTGATAG CGATCC CTATCAC-GCC ACAGGTGACGGGAAT TERM 5108 4042942 - 4042922 - g 78 -12.5 -2.91264 | CCGCCCAGGTACATA CGCAGCTGC CTT GCCGCTGCG TCCGGTGATGGTCTT yibH 4042254 - 4043339 + | hypothetical protein TERM 5109 4043439 - 4043452 + G 70 -5.3 -4.35348 | TAGCTACACCAGCCC GTTTG TACG CAAAC TTTCTATTCTGTTGT TERM 5110 4043867 - 4043881 + G 70 -10 -3.1544 | CCGATACGGTCAATC TGGCGA CTA TCGCCA TTGCCTGTGCTGTCG yibF 4043410 - 4044018 + | glutathione S-transferase TERM 5111 4044516 - 4044534 + G 79 -12.4 -3.01712 | ATCGCGATCGGGCGC TGGCGCAG CTG CTGCGCCG TATTACGGGGGCGGA selA 4044116 - 4045507 + | selenocysteine synthase TERM 5112 4045911 - 4045932 + G 76 -9.5 -3.85698 | opp_overlap 4045896 4045911 GGTTCTGCGGGAATA CGGTTTTGC TGAG GCAAAACTG TTTATCACCGCAGCA TERM 5113 4047317 - 4047327 + G 70 -6.8 -4.08557 | overlap 4047291 GAAATGATCATTTAT TGCG CGA CGCA TTATTATTTCCGGAA selB 4045504 - 4047348 + | selenocysteinyl-tRNA-specific translation factor TERM 5114 4047409 - 4047435 + F 100 -8.1 -5.13741 | opp_overlap 4047409 ATGATTTTAAATAAA GCACATTGTTT AATGA ATACAATGTGC TTTTTATTAGATTAA TERM 5115 4047435 - 4047409 - f 81 -8.1 -4.44448 | opp_overlap 4047409 ATGATTTTAAATAAA GCACATTGTTT AATGA ATACAATGTGC TTTTTATTAGATTAA yiaY 4047538 - 4048689 + | putative alcohol dehydrogenase TERM 5116 4048704 - 4048726 + F 93 -9.8 -4.65838 | opp_overlap 4048705, overlap 4048705 ATCATCATTCCAACA ACGGCTGGCA AAT TGTCAGCCGC TTTTTCAACTATCTC TERM 5117 4048705 - 4048725 + F 86 -13.3 -3.3878 | opp_overlap 4048705, overlap 4048704 TCATCATTCCAACAA CGGCTGGCA AAT TGTCAGCCG CTTTTTCAACTATCT TERM 5118 4048725 - 4048705 - f 86 -11.1 -3.66018 | opp_overlap 4048705 4048704 TCATCATTCCAACAA CGGCTGGCA AAT TGTCAGCCG CTTTTTCAACTATCT TERM 5119 4049103 - 4049123 + G 85 -11.9 -3.66356 | overlap 4049108 GCGCACACCTCGGTG CAGGATCGC GCG GCGATTCTG TTTAAGATTGCCGAT TERM 5120 4049570 - 4049582 + G 71 -9.1 -3.55444 | opp_overlap 4049549 4049569 GACCTCGAAACGCAT CGCCA AAG TGGCG TTTACCGGCTCAACG aldB 4048854 - 4050392 + | lactaldehyde dehydrogenase SFV_3946 4050823 - 4050611 - | hypothetical protein TERM 5121 4050955 - 4050967 + G 84 -7.7 -4.67478 | TTCCTGGACTATTTT GCACT GGG AGTGC TTATTTTTGTATTTC yiaW 4050907 - 4051260 + | hypothetical protein yiaV 4051266 - 4052402 + | hypothetical protein TERM 5122 4052410 - 4052462 + T 73 -11.4 -2.72043 | overlap 4052410 ATCATTAATCTTCGC TTTCCGCC-GCTTGTTCAGGCCGCAG TTG CTGCGAC-TGAGCAAGCTGGTGGCGA ATTTCACGCAGCATT TERM 5123 4052410 - 4052463 + T 75 -9.8 -3.5394 | gap 3, overlap 4052410 ATCATTAATCTTCGC TTT-CCGCC-GCTTGTTCAGGCCGCAG TTG CTGCGAC-TGAGCAAGCTGGTGGCGAA TTTCACGCAGCATTT SFV_3949 4052713 - 4052399 - | putative transcriptional regulator LYSR-type TERM 5124 4052890 - 4052880 - R 80 -6.8 -4.63932 | TATTGTGTAATAAAA CTGG CAA CCAG CGATTCATCTTTTGG SFV_3950 4053156 - 4052920 - | putative IS1 encoded protein insB 4053231 - 4053734 + | IS1 ORF2 TERM 5125 4053778 - 4053792 + F 74 -7.2 -4.27483 | opp_overlap 4053775, overlap 4053774 TTTTAGCGATAAGGT GATATC ACC GATATC TTTAATTTTATCGAT TERM 5126 4054040 - 4054022 - f 73 -7.5 -4.18197 | ACTTTTGATTCAAAA TCAGCAA GATAT TTGCTGA CGTTGGCCTGTGCGA yiaT 4054272 - 4055012 + | putative outer membrane protein TERM 5127 4054988 - 4055005 + T 76 -4.7 -4.8622 | overlap 4054990 GAGTTTTACCTTTGT CACCGGC GTGA GCTGGCG TTTTTAATTCACCGG SFV_3953 4057112 - 4055133 - | hypothetical protein TERM 5128 4056410 - 4056426 + g 70 -5 -4.44797 | CGTAGGTGTGCCAGT GCGAGG TCTGC CCGCGC TTTTCATATTCCTGG SFV_3954 4058523 - 4057123 - | putative permease TERM 5129 4058413 - 4058447 + g 77 -3.4 -5.0538 | overlap 4058416 4058416 GATCAGGCAAGTTAT TACGGTGCCGCCTGCG TCA CCCAGGCCGTAGCCTA TTTTTTCCCGTACAG SFV_3955 4058749 - 4059564 + | putative transcriptional regulator sgbE 4060291 - 4059596 - | L-ribulose-5-phosphate 4-epimerase sgbU 4061178 - 4060285 - | putative L-xylulose 5-phosphate 3-epimerase TERM 5130 4060620 - 4060642 + gr 78 -5.4 -4.82855 | overlap 4060622 AGACGGTGAACCACG GCGAGGCGAG CAT CTCGTCCCAC TTTTTCCATTTACTG TERM 5131 4060943 - 4060904 - GR 72 -6.3 -4.26076 | opp_overlap 4060936, overlap 4060909 4060910 TCACGGCTACCAAAA GGAAAGCGACGATGTGC GGACAG GCACATCGACGGGATCC CAACACCCGTTTCGA TERM 5132 4060938 - 4060909 - GR 76 -7.8 -4.23781 | opp_overlap 4060936, overlap 4060904 4060910 GCTACCAAAAGGAAA GCGACGATGTGC GGACAG GCACATCGACGG GATCCCAACACCCGT TERM 5133 4060937 - 4060910 - GR 77 -11.3 -3.13546 | opp_overlap 4060936, overlap 4060909 4060904 CTACCAAAAGGAAAG CGACGATGTGC GGACAG GCACATCGACG GGATCCCAACACCCG sgbH 4061800 - 4061138 - | 3-keto-L-gulonate-6-phosphate decarboxylase lyxK 4063293 - 4061797 - | L-xylulose kinase, cryptic TERM 5134 4063013 - 4063044 + g 72 -5.2 -4.48987 | overlap 4063008 ATGGCGTTACCGAGC GGCTTGTTGTTTTT ATCC AGCAAAAACAAGCC TTTTCCTTGTGCGGA yiaO 4064283 - 4063297 - | putative solute-binding transport protein yiaN 4065573 - 4064296 - | hypothetical protein yiaM 4065878 - 4065576 - | hypothetical protein insB 4066411 - 4065908 - | IS1 ORF2 SFV_3964 4066486 - 4066674 + | putative IS1 encoded protein yiaK 4067812 - 4066820 - | 2,3-diketo-L-gulonate reductase TERM 5135 4067814 - 4067826 + H 85 -3.3 -5.54894 | AATGTCACTTTCATC CTAGG CTT CCTTG TTTTTTTGATCGCTT yiaJ 4068049 - 4068861 + | putative regulator yiaI 4068963 - 4069436 + | hypothetical protein TERM 5136 4069469 - 4069439 - T 72 -9.1 -3.53444 | gap 1, opp_overlap 4069438 4069437, overlap 4069440 GCAGCCTGTTTGAAA CGTTTTCCGGCGTT TCTC AACGCCGGAATA-G TGCGCTTTGTTTATG avtA 4070945 - 4069587 - | valine--pyruvate transaminase TERM 5137 4069748 - 4069760 + g 71 -9.1 -3.54741 | GCCCCGGCACCATCA GCACG CCG CGTGC TTTCAGGCGCTGATA malS 4073048 - 4071018 - | periplasmic alpha-amylase precursor TERM 5138 4071093 - 4071075 - G 72 -6.6 -4.2461 | overlap 4071071 ATGCTCACGAACAAA GCCGTAGC CCT GCTTCAGC GAAAGTGTCGTTTGT TERM 5139 4072561 - 4072543 - G 72 -8.8 -3.80573 | opp_overlap 4072542 4072543 TCCAGCAGGAGTAAA CCGTTGCT GGT AGCAGCGG GTTGTAACGTTATTT TERM 5140 4073611 - 4073601 - g 71 -2.4 -4.92777 | overlap 4073594 AACACCAAGGAAAAA GGCG TTT CTCC GGACCGTAATGCCTT bax 4073368 - 4074192 + | hypothetical protein TERM 5141 4074207 - 4074236 + T 87 -10.1 -4.26903 | ATTTCATTTCCTCGA GCCTTATCTGATT TGTC GGTCGGATAAGGC TTTTGCTCGCATCAG TERM 5142 4075131 - 4075111 - T 72 -3.2 -4.98436 | GGAAGACCATAAAAA GCAAAGCG GTTAA CGCCTTTC TCTTTTAAATGCAAA TERM 5143 4075167 - 4075149 - T 78 -6 -4.81249 | opp_overlap 4075141 4075149 TTTTAAATGCAAAAA TGCGCT TTCAACC AGCGCA TAGTTATCGGTGGCA TERM 5144 4075539 - 4075508 - T 100 -12.4 -4.7078 | opp_overlap 4075515 TGAATCATGCAAAAA CTCAAAACCGGTAA TACG TAACCGGCTTTGAG AAAATTTTTATCAAA xylG 4078256 - 4076715 - | xylose transporter ATP-binding subunit TERM 5145 4077007 - 4077017 + g 85 -6.8 -4.81083 | AGTAACAGACAGCGG GCGA GGA TCGC TTTTTGCTGATTGCC TERM 5146 4078330 - 4078302 - R 95 -12.4 -4.0641 | opp_overlap 4078321 CGGCATGGAGAGAAA TCACGCCCCCGC TCCGC GCCGGGGCGTAA CGCTTACAGCTCGCT xylF 4079404 - 4078334 - | D-xylose transporter subunit XylF TERM 5147 4080149 - 4080132 - H 74 -8.3 -3.86822 | TAACTGCTTTACAAA CCCTCGC TATG GCGCGGG TGCGGCGACGAACCC TERM 5148 4080999 - 4081027 + H 100 -9.6 -5.40072 | gap 1, opp_overlap 4080979, overlap 4081000 ACTGTGCAGTCCGTT GGCCCGGTTATCG GTAG CGATA-CCGGGCA TTTTTTTAAGGAACG TERM 5149 4081000 - 4081026 + H 95 -13.1 -3.83561 | gap 1, opp_overlap 4080979, overlap 4080999 CTGTGCAGTCCGTTG GCCCGGTTATCG GTAG CGATA-CCGGGC ATTTTTTTAAGGAAC TERM 5150 4082075 - 4082090 + G 77 -3.2 -5.04868 | opp_overlap 4082075, overlap 4082075 ACACCACACAATAAT CCCC AGGCGAAG GGGG TTTTCTTTGGTTTGA xylB 4081049 - 4082503 + | xylulokinase TERM 5151 4082947 - 4082965 + G 82 -2.4 -5.42131 | CAATGCTTATGAAAT GGTGAT CTACCCC ATCGCC TTTTTTGTCTGCTTG yiaB 4082672 - 4083013 + | hypothetical protein yiaA 4083059 - 4083496 + | hypothetical protein TERM 5152 4083506 - 4083531 + T 75 -6.1 -4.43477 | opp_overlap 4083506 GAATAATTCACGTAA GCCCGGTCA GTCCAATG TGAACGGGC TTTTACTTAACTCAC yiaH 4084533 - 4083538 - | hypothetical protein TERM 5153 4084378 - 4084366 - G 71 -3.3 -4.84363 | GGAAATCATGAAAAA TAGCG GCA CGCTG ACACGAGAGGCAGAA TERM 5154 4084900 - 4084882 - g 77 -3 -5.14563 | overlap 4084884 CCGGCGAGCAAAAAA TCGACGTC ACC GCCTTCGA ACAGTTCCAGGGAAG SFV_3980 4084707 - 4085006 + | putative lipoprotein TERM 5155 4085806 - 4085788 - g 70 -6.7 -4.12254 | gap 1 CAGTACGAGAAAGAA GCG-CAGC AGCT GCTGGCGC TGGAAAATCCGCTGC glyQ 4085101 - 4086012 + | glycyl-tRNA synthetase subunit alpha TERM 5156 4086581 - 4086591 + G 72 -8.2 -3.85698 | CCGATCGCGTGATTC GCGG CCA CCGC TTTATGGGCGAACCG glyS 4086022 - 4088091 + | glycyl-tRNA synthetase subunit beta TERM 5157 4088127 - 4088110 - T 100 -12.7 -4.72272 | opp_overlap 4088110 CGCCGTTATTAAAAA GCCTGCC ATCT GGCAGGC TTTTTTGGTAATGAC TERM 5158 4088110 - 4088127 + T 100 -12.7 -5.1861 | opp_overlap 4088110 CGCCGTTATTAAAAA GCCTGCC ATCT GGCAGGC TTTTTTGGTAATGAC insB 4088652 - 4088149 - | IS1 ORF2 SFV_3984 4088727 - 4088927 + | putative IS1 encoded protein TERM 5159 4088914 - 4088946 + F 72 -8.5 -3.70863 | overlap 4088916 ACCTACATCATCTAC CAGCTATCGCCTGAT AAA GTTAGGTGATAGCTA TTTCAATACTCTCTG TERM 5160 4088916 - 4088944 + F 79 -11.1 -3.43109 | overlap 4088914 CTACATCATCTACCA GCTATCGCCTGAT AAA GTTAGGTGATAGC TATTTCAATACTCTC TERM 5161 4089003 - 4089019 + F 77 -3.7 -5.10767 | ACTCCCATTCCTGAT TGCTTAA TAA TCAAGCA TTTTTATCTTGAATG SFV_3985 4089067 - 4089363 + | hypothetical protein TERM 5162 4090034 - 4090023 - g 70 -5.8 -4.19577 | TAAGGTGCAAAACAA CCAG ATTT CTGG TGGTCAACTGGGTGG yhiV 4089388 - 4092501 + | putative transport system permease protein TERM 5163 4092546 - 4092513 - T 79 -12.6 -2.92667 | opp_overlap 4092513, overlap 4092510 4092515 GTAACGTGTAAATGA GAGTAAGGTTGAAC GTGAAG GTTCAGCCTTACTC TTTCCTGCTAACCAT TERM 5164 4092513 - 4092546 + T 100 -14.8 -3.78953 | opp_overlap 4092513 4092510 4092515 GTAACGTGTAAATGA GAGTAAGGTTGAAC GTGAAG GTTCAGCCTTACTC TTTCCTGCTAACCAT TERM 5165 4092792 - 4092779 - T 70 -9.5 -2.99057 | overlap 4092776 TGCGAAAGAGAACTA GCCGG TAGC CCGGC AGAAATCATCAGGGA yhiW 4093592 - 4092864 - | putative ARAC-type regulatory protein TERM 5166 4093917 - 4093935 + r 100 -5.2 -6.06529 | GCAGACTATCCTCTT CCCGGT CCCCTAT GCCGGG TTTTTTTTATGTCTG yhiX 4094784 - 4093960 - | DNA-binding transcriptional regulator GadX TERM 5167 4095138 - 4095092 - R 86 -10.9 -3.72324 | opp_overlap 4095096, overlap 4095096 TATTGCGATTAATAA GCAACCGAATGCCCAGCTGTT TTTTT AAAGGCTGGGCATTCGGTTTT TACAACGTTATGTTA TERM 5168 4095096 - 4095134 + r 100 -18.3 -4.60255 | opp_overlap 4095092 4095096 GCGATTAATAAGCAA CCGAATGCCCAGCTGTT TTTTT AAAGGCTGGGCATTCGG TTTTTACAACGTTAT TERM 5169 4095134 - 4095096 - R 100 -16.1 -3.56142 | opp_overlap 4095096, overlap 4095092 GCGATTAATAAGCAA CCGAATGCCCAGCTGTT TTTTT AAAGGCTGGGCATTCGG TTTTTACAACGTTAT gadA 4096554 - 4095154 - | glutamate decarboxylase isozyme TERM 5170 4096755 - 4096730 - R 100 -14.1 -5.08601 | opp_overlap 4096726 TTATCGTAATAAAAA TCGCCCAAACA TTCC TGTTCGGGCGA TCAAATTAATTATTG yhjA 4098162 - 4096765 - | putative cytochrome C peroxidase TERM 5171 4097150 - 4097164 + g 75 -7.1 -4.34402 | TAGCCTTTTTTCTGT TGCGC CGTCA GCGCA TTTTCATCTCCACGC TERM 5172 4097284 - 4097307 + g 70 -3.8 -4.62471 | gap 1, overlap 4097287 CGGATAAACTTCGAG GAACTGC-GCT TTA AGCTGCGGATC TTTTTCCAGCTTAGC insB 4098724 - 4098221 - | IS1 ORF2 SFV_3992 4098799 - 4098990 + | putative IS1 encoded protein TERM 5173 4099043 - 4099090 + F 93 -16 -2.84566 | gap 1, overlap 4099040 CTCTTACTGCTATTT TTTTCCGGG-ATTGTTATTTCCA CGA TGCAAATGACAATACCCGGAAAA TCCTTCTGAACTCTT yiiS 4099227 - 4099526 + | hypothetical protein TERM 5174 4099745 - 4099723 - g 76 -10.8 -3.41024 | opp_overlap 4099717, overlap 4099718 4099721 CCCTGCAACAGAAGA TATTCTTCAA TTG TTGAAGAATA AGTCGGATAACAAGC TERM 5175 4099818 - 4099802 - g 70 -3.6 -4.66537 | overlap 4099797 4099804 TGGCCGAAGACAAAA CTGCGT ATTGA ACGCGG AGAAATGCCGGAAAC yiiT 4099553 - 4099981 + | universal stress protein UspD fpr 4100732 - 4099986 - | ferredoxin-NADP reductase TERM 5176 4100012 - 4100052 + g 72 -10.3 -3.35224 | overlap 4100010 GCTCCGCTGTCATAT GGCCCGGTCGGCGACGTAA ATG TTTCGTCATCTGCCGGGTC TCTTTCAGCAACTGT TERM 5177 4100456 - 4100442 - G 70 -5.7 -4.33417 | TTCATCCAGAACAAA GAAGC CAGCT GCTTC GCTAACCACCTGCAC TERM 5178 4100808 - 4100787 - R 100 -13.1 -5.7946 | CTCCGAACAAAAAAA TTCCAGTCC CGAA GGACTGGAA GGCTCAATCGATCAA glpX 4101839 - 4100829 - | fructose 1,6-bisphosphatase II TERM 5179 4101732 - 4101750 + g 95 -9.5 -4.83169 | opp_overlap 4101719 4101718 ACGCATGGCGTTTAC CGCCGCG CCGTC CGCGGTG TTTTTATCGCCGCGT TERM 5180 4101904 - 4101927 + r 79 -10.2 -3.5944 | overlap 4101905 GGTGGGATTATTGAT GTGTGCGGGG TTGC CCCCGCACGG TTTCAGAGTCTGCGT TERM 5181 4101905 - 4101926 + r 83 -13.7 -2.75343 | overlap 4101904 GTGGGATTATTGATG TGTGCGGGG TTGC CCCCGCACG GTTTCAGAGTCTGCG glpK 4103514 - 4102069 - | glycerol kinase TERM 5182 4102097 - 4102110 + g 74 -3.1 -5.02074 | gap 1, overlap 4102088 TCTTCCCACGCCATC GCGCGT TTG AC-CGC TTTTTTCCAGCCTGC TERM 5183 4102551 - 4102561 + g 72 -6.8 -4.25074 | opp_overlap 4102551, overlap 4102559 CCGGAACCACATACA CACC ATT GGTG TTTTGCACTTTGGTG TERM 5184 4103438 - 4103462 + g 72 -8.7 -3.76492 | overlap 4103430 TCCATTGGGTCGTGT TCTACCCAA CCTGGTT TTGGGTAGA TTTGCTCAAATTCGC glpF 4104444 - 4103800 - | glycerol diffusion facilitator protein TERM 5185 4104996 - 4104980 - g 74 -2.9 -5.01858 | GAAAGAAAAAAACAA CTCACTG TCG CAGGAAG TTCAAAATGCCCAGC yiiU 4104876 - 4105115 + | hypothetical protein TERM 5186 4105177 - 4105192 + T 93 -10.4 -4.3953 | opp_overlap 4105177 GTAACGCAGAAAAAA GGCACC TTGC GGTGCC TTTCTTATCATTCAA TERM 5187 4105192 - 4105177 - T 100 -10.4 -5.31456 | opp_overlap 4105177 GTAACGCAGAAAAAA GGCACC TTGC GGTGCC TTTCTTATCATTCAA menG 4105685 - 4105200 - | ribonuclease activity regulator protein RraA menA 4106704 - 4105778 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 5188 4106740 - 4106723 - R 100 -9.1 -5.06816 | opp_overlap 4106710, overlap 4106710 ACGCGCCAATAAAAA TGGGGCC TTTC AGCCCCA TCAAACAATGATGAA hslU 4108102 - 4106771 - | ATP-dependent protease ATP-binding subunit hslV 4108642 - 4108112 - | ATP-dependent protease peptidase subunit TERM 5189 4108697 - 4108678 - R 100 -13.6 -4.05991 | overlap 4108665 4108671 AATACAGAGTACAAA CCCCGTAC AAAA GTACGGGG CATAATGCAATTATA ftsN 4109694 - 4108735 - | essential cell division protein TERM 5190 4109151 - 4109162 + g 70 -5.8 -4.21974 | overlap 4109161 GCGACGTACGCGTCT GCTG CTGC CAGC TTTGTTCAGTCGTAC TERM 5191 4109247 - 4109263 + g 70 -10.1 -3.23853 | overlap 4109238 4109245 GTTGTAGCGTTTGCT GACGCTG TTC CGGCGTC TGTTCATTCCACGGA cytR 4110748 - 4109786 - | DNA-binding transcriptional regulator CytR priA 4113062 - 4110864 - | primosome assembly protein PriA TERM 5192 4111352 - 4111334 - G 74 -10.2 -3.53444 | overlap 4111345 CGACCTGGGTGTAAA GCTGAGCG AAA CGCTCTGC CGAGCGAAAATCGGC TERM 5193 4111919 - 4111947 + g 76 -7.9 -4.29153 | CCGGACGCGCATTCC CCGCCCGGCGCGT CAG GCGCAGCAGGCGG TATTTTTTCTGCTGG TERM 5194 4113497 - 4113510 + r 100 -9.5 -5.64274 | opp_overlap 4113497 GGATTTCCGAAAAAA GCGCC GCAC GGCGC TTTTTTTGTGCCTGA TERM 5195 4113510 - 4113497 - R 100 -9.5 -5.02074 | opp_overlap 4113497 GGATTTCCGAAAAAA GCGCC GCAC GGCGC TTTTTTTGTGCCTGA yiiX 4114146 - 4113538 - | putative peptidoglycan peptidase TERM 5196 4114117 - 4114138 + g 85 -7.3 -4.81083 | opp_overlap 4114113 4114114 4114116, overlap 4114116 4114122 AGGTACAGAAACCAG CAGGCTG AGGATCAG CAGCCTG TTTTTCATAGTTAAA metJ 4114692 - 4114330 - | transcriptional repressor protein MetJ TERM 5197 4115224 - 4115280 + G 76 -7.4 -4.24413 | gap 2, opp_overlap 4115263, overlap 4115227 4115228 4115258 GCGCCGCACGACTGC TACGGCGGTAGCTATCGCCTGTTCGACA GTC TGGCGAA-ACGCGGTTGCTATCGC-GTG TTGTTTGTTGATCAA TERM 5198 4115228 - 4115277 + G 73 -11.5 -2.81784 | gap 1, opp_overlap 4115263, overlap 4115227 4115224 4115258 CGCACGACTGCTACG GCGGTAGCTATCGCCTGTTCGACA GTC TGGCGAA-ACGCGGTTGCTATCGC GTGTTGTTTGTTGAT TERM 5199 4115258 - 4115283 + G 70 -6.1 -4.24342 | opp_overlap 4115263, overlap 4115228 4115227 4115224 TGTTCGACAGTCTGG CGAAACGCGGT TGCT ATCGCGTGTTG TTTGTTGATCAAGGC metB 4114780 - 4116084 + | cystathionine gamma-synthase metL 4116087 - 4118519 + | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 5200 4118670 - 4118692 + F 100 -8.4 -5.42605 | AGTTTATATTTGCAG TCCGGTTTGC TTT GCATATCGGA TTTTCTTTTTCTTAC metF 4118868 - 4119758 + | 5,10-methylenetetrahydrofolate reductase TERM 5201 4119833 - 4119871 + F 71 -10.4 -2.60392 | overlap 4119830 4119835 4119844 GCTGCCTCGAAATGA GGGCGGGAAAATAAGGTT GTC AGCCTTGTTTTCTCCCTC ATTACTTGAAGGATA katG 4120087 - 4122267 + | catalase; hydroperoxidase HPI(I) TERM 5202 4122277 - 4122309 + F 100 -21.5 -4.41616 | CTGTAATCTGACCTT CTTCAGCGACTGTCT TTC AGGCAGTCGCTGAAG TTTCTTTACCGGCGT TERM 5203 4122757 - 4122768 + G 77 -7.2 -4.53398 | TTCGCGATTCTGATT GCCG CTTT CGGC TTATTTTTGGTGTTG yijE 4122328 - 4123266 + | hypothetical protein yijF 4123910 - 4123293 - | hypothetical protein TERM 5204 4124143 - 4124184 + H 75 -9.6 -3.65201 | gap 1, opp_overlap 4124155, overlap 4124148 4124155 AGCGCATCAGGCAAT TTTGCGTTCAAACTCCCGG ACAAG CCGGGAGTTTGGA-GTAGG TTATTCCCACTCTTG TERM 5205 4124148 - 4124180 + H 78 -12.8 -2.65808 | opp_overlap 4124155, overlap 4124143 4124155 ATCAGGCAATTTTGC GTTCAAACTCCCGG ACAAG CCGGGAGTTTGGAG TAGGTTATTCCCACT TERM 5206 4124173 - 4124155 - H 86 -11.7 -3.53343 | opp_overlap 4124148 4124143 4124155 AATTTTGCGTTCAAA CTCCCGG ACAAG CCGGGAG TTTGGAGTAGGTTAT TERM 5207 4124155 - 4124173 + H 86 -11.7 -3.62418 | opp_overlap 4124155, overlap 4124148 4124143 AATTTTGCGTTCAAA CTCCCGG ACAAG CCGGGAG TTTGGAGTAGGTTAT TERM 5208 4124226 - 4124208 - H 72 -10.3 -2.83522 | overlap 4124207 ACTCTTGCAGGAAAC GCTGACC GTACT GGTCAGC TACCAGCAGTGCGGC TERM 5209 4125474 - 4125462 - H 72 -9.1 -3.53091 | ACGCGGCGTTTTAAA GCTGG CTG CCAGC ACCATGCTTTCTGGC TERM 5210 4126908 - 4126921 + H 83 -4.5 -5.33405 | overlap 4126909 TTACGTAGTTGCTGT TTGGC TTCT GCCAG TTTTTCTTTCATCCA TERM 5211 4128316 - 4128327 + H 74 -7.2 -4.20354 | opp_overlap 4128316, overlap 4128317 TATCGGTGCCAATCA GCGC CAGA GCGC TTTTGGCGTTGCCTT TERM 5212 4128642 - 4128652 + H 70 -2.4 -4.93898 | TATCGCAAGTTATGA GGCG GAT CGCA TTTTTGTACTGATAT frwC 4128781 - 4129860 + | putative fructose-like permease EIIC subunit 2 frwB 4129875 - 4130195 + | putative fructose-like phosphotransferase EIIB subunit 2 TERM 5213 4130204 - 4130221 + F 74 -10.5 -3.27525 | CGCTTAAGTTCTTCT CCCGCTC GCAA GGGCGGG TTCGCTTTCCCACAG TERM 5214 4130633 - 4130609 - gf 81 -6.6 -4.59773 | gap 1, opp_overlap 4130586 CCGTACTGGGAAAAA CGTTCGATGAA AGAT TTCATC-AACG GGCAGATGACAGATG TERM 5215 4130977 - 4130992 + GF 77 -9 -3.8512 | opp_overlap 4130966 4130965 TAAGCCGCAGACGTT CTGGCA GGCG TGCCAG TTATTCTGGTACATG pflD 4130246 - 4132543 + | putative formate acetyltransferase 2 TERM 5216 4132764 - 4132778 + GF 72 -9.2 -3.55801 | opp_overlap 4132764, overlap 4132765 CGTGATGCGGATGAA TGCCCC TCC GGGGCG TTTGAACGGATTGGT TERM 5217 4132765 - 4132777 + GF 71 -10.5 -2.73159 | opp_overlap 4132764, overlap 4132764 GTGATGCGGATGAAT GCCCC TCC GGGGC GTTTGAACGGATTGG pflC 4132509 - 4133387 + | pyruvate formate lyase II activase frwD 4133389 - 4133730 + | putative fructose-like phosphotransferase EIIB subunit 3 yijO 4134568 - 4133717 - | putative ARAC-type regulatory protein TERM 5218 4134221 - 4134245 + g 74 -6.3 -4.52347 | opp_overlap 4134204, overlap 4134210 4134217 TATGCGTGGGCCGCG TCGGGCGACGT GTT GCTTCGCCAGA TTTTGATATTGTTTG TERM 5219 4134642 - 4134622 - R 91 -7.6 -5.1861 | gap 1, overlap 4134606 GGCATTATTAAAAAA GGCCAC-CT GAAA AGTGTGGCC TGAGGGGAGTTCGAT yijP 4136450 - 4134717 - | hypothetical protein TERM 5220 4136398 - 4136382 - G 75 -4.3 -4.84033 | opp_overlap 4136392, overlap 4136385 AGAGAAAAACCAAAA GTAGAGC AGT GCCCAAC CCAGGGCTTTCCAGC TERM 5221 4136594 - 4136615 + r 82 -11.5 -3.53012 | opp_overlap 4136594 AAGTATTTCAGAAAA CCCTCGCGC AAAA GCACGAGGG TTTGCAGAAGAGGAA TERM 5222 4136615 - 4136594 - R 100 -13.7 -4.41206 | opp_overlap 4136594 AAGTATTTCAGAAAA CCCTCGCGC AAAA GCACGAGGG TTTGCAGAAGAGGAA ppc 4139284 - 4136633 - | phosphoenolpyruvate carboxylase TERM 5223 4139537 - 4139568 + r 77 -11.6 -2.76696 | opp_overlap 4139546 4139548 4139558, overlap 4139536 ACACCAAAGGTGTAG GTCGGATAAGATGC GCAA GCATCGCATCCGAC ATTATTGCGGCACCG TERM 5224 4139595 - 4139633 + r 87 -9.5 -4.25104 | gap 1, opp_overlap 4139573 4139558, overlap 4139598 ACCGGAGTTTGGCAA CG-GTGCCGGATGCGGCG CGAG CGCCTTATCCGGCCTACG TTTTAATGCCAGCAA TERM 5225 4139598 - 4139629 + r 79 -12.2 -2.77781 | opp_overlap 4139573 4139558, overlap 4139595 GGAGTTTGGCAACGG TGCCGGATGCGGCG CGAG CGCCTTATCCGGCC TACGTTTTAATGCCA argE 4140787 - 4139636 - | acetylornithine deacetylase TERM 5226 4140865 - 4140847 - H 73 -2.4 -5.14163 | ATTTATGAATAAAAA TACACTAA CGT TGAGCGTA ATAAAACCCACCAGC argC 4140941 - 4141945 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 5227 4142225 - 4142212 - gf 71 -2.3 -4.90525 | GAACGGCAAATAAAA CCCTG TTGG CATGG GCGAAGAAACATCAG argB 4141920 - 4142729 + | acetylglutamate kinase TERM 5228 4144023 - 4144001 - g 72 -10.6 -3.03635 | opp_overlap 4143999, overlap 4143990 CAAACCGCTGGAAGA TCTGCCACTC AGT GAGTTGCAGA AATTCAGTCAGGTGA argH 4142790 - 4144163 + | argininosuccinate lyase TERM 5229 4144357 - 4144332 - f 72 -9.1 -3.61398 | opp_overlap 4144332 GTGGCTGTGTAAGAA TCCGGAAAC GCTCACTT GTTTCCGGA TTTTTTTATGCACAT TERM 5230 4144332 - 4144357 + F 100 -9.8 -5.61596 | opp_overlap 4144332 GTGGCTGTGTAAGAA TCCGGAAACG CTCACT TGTTTCCGGA TTTTTTTATGCACAT SFV_4030 4144347 - 4145693 + | IS4 orf TERM 5231 4145704 - 4145675 - f 89 -9.3 -4.59109 | overlap 4145677 CACAGCCCCGAAAAA GAGCCAGTCAGTT GCTT AACTGACTGGCAT TACAGCATTCTGGTG TERM 5232 4145702 - 4145677 - f 100 -16.3 -3.90762 | overlap 4145675 CAGCCCCGAAAAAGA GCCAGTCAGTT GCTT AACTGACTGGC ATTACAGCATTCTGG TERM 5233 4146633 - 4146623 - g 74 -8.2 -3.91798 | GAACCGGCAACCAAA GGCC TGT GGCC AGAAGAGCAGTTGTG TERM 5234 4147072 - 4147086 + G 76 -7.8 -4.1721 | ATCGCCTGTTTGTCA TGCGGC GGC GCTGCA TTTTGACCTATGGGT SFV_4031 4146101 - 4147315 + | starvation-sensing protein insB 4147997 - 4148500 + | IS1 ORF2 TERM 5235 4148528 - 4148540 + F 77 -9.1 -3.91897 | ACCCGGTCTGGGTAT TGGCG AAG CGCCA TTTATGCCTGCGGGA TERM 5236 4149282 - 4149300 + F 83 -6.1 -4.95957 | TCCATCGCCGGGATT CAAAACT TTGGC AGTTTTG TTTTTGCTTCCTTTG TERM 5237 4149510 - 4149492 - f 100 -11 -6.17268 | GTAGAATAAAAAAAA GCGGATCC TGG AGATCCGC AAAAGTTCACGTTGG oxyR 4149696 - 4150613 + | DNA-binding transcriptional regulator OxyR udhA 4151930 - 4150596 - | soluble pyridine nucleotide transhydrogenase TERM 5238 4152052 - 4152027 - H 89 -9.1 -4.60797 | TTCTTATACATAAAA GCAACAGAATG GTAA CATTCTATCGC GGGTAAGCCAATTGA TERM 5239 4152365 - 4152351 - g 100 -2.7 -6.01725 | opp_overlap 4152360 AACAAAAAGAAAAAA CCCGC CGTTC GCTGG TGGAAGCCGCATTTA TERM 5240 4152947 - 4152933 - g 73 -4.2 -4.79752 | GTGAACAAGAGAAAA CCGCAA TTA TTCCGG GAAATGTGAAGGACG yijC 4152104 - 4152967 + | DNA-binding transcriptional repressor FabR TERM 5241 4153162 - 4153175 + G 73 -3.7 -4.77567 | GTAGGCTTGCCGGGT CTGGC AGCT GCCTG TTTTATTCTCGGCGT yijD 4152967 - 4153326 + | hypothetical protein TERM 5242 4153332 - 4153363 + T 100 -15.2 -4.41494 | overlap 4153333 4153334 TGCTGAGTAATCGGT ATCATGCCGGATGC TGGC GCATCCGGCATGGG TTTTACTTCGCGGTC TERM 5243 4153333 - 4153362 + T 100 -18.7 -3.24414 | overlap 4153332 4153334 GCTGAGTAATCGGTA TCATGCCGGATGC TGGC GCATCCGGCATGG GTTTTACTTCGCGGT TERM 5244 4153334 - 4153361 + T 100 -20 -2.54166 | overlap 4153333 4153332 CTGAGTAATCGGTAT CATGCCGGATGC TGGC GCATCCGGCATG GGTTTTACTTCGCGG trmA 4154466 - 4153366 - | tRNA (uracil-5-)-methyltransferase TERM 5245 4153430 - 4153457 + g 74 -9.8 -3.45839 | opp_overlap 4153429 AACTGATCAAACAGG GCCAGACGTTCG ACCT TGTGCGTCTGGC TTAATGTTTCCAGAT TERM 5246 4155298 - 4155280 - gH 70 -9.6 -3.01712 | GCGGGGTGGTGAATA TCATCACG ACG CGCGATGA ACCCGGAACGGAAAT btuB 4154790 - 4156679 + | vitamin B12/cobalamin outer membrane transporter TERM 5247 4156687 - 4156722 + GF 95 -14 -3.41125 | gap 1, opp_overlap 4156684, overlap 4156689 CCTTCTGAACCACGT CCCACCG-TGCTGGTGT TTG ACTCCGGCGTCGGTGGG TTGTCGGTCTATGAC TERM 5248 4157422 - 4157470 + GF 87 -10.4 -4.18094 | gap 1, opp_overlap 4157419 4157422, overlap 4157423 GAAGCTGAACAATTA TTGCCCGTTTTAC-AGCGTTACG GCTT CGAAACGCTCGAAAAACTGGCAG TTTTAGGCTGATTTG TERM 5249 4157423 - 4157469 + GF 78 -11.7 -3.10134 | gap 1, opp_overlap 4157422 4157419, overlap 4157422 AAGCTGAACAATTAT TGCCCGTTTTAC-AGCGTTACG GCTT CGAAACGCTCGAAAAACTGGCA GTTTTAGGCTGATTT murI 4156624 - 4157481 + | glutamate racemase TERM 5250 4159466 - 4159453 - f 75 -6.7 -4.41177 | overlap 4159457 GATAGAAAGTGAAAA GCAAG GCGT CTTGC GAAGCAGACTGATAC TERM 5251 4159692 - 4159668 - f 71 -8 -3.93061 | gap 1, opp_overlap 4159675 AGCTGAAAATTGAAA CACTGAACAAC GAAA GTTGTTC-GTG AGTCTCTCAAATTTT TERM 5252 4160246 - 4160234 - f 72 -6.2 -4.2354 | GAAAGGCGAAAAGAA CCCC AGCGA GGGG AGTGAAAAAGAACCT TERM 5253 4162735 - 4162714 - f 74 -8.7 -3.91196 | CTGATACAGATTAAA TCAGAACGC AGAA GCGGTCTGA TAAAACAGAATTAGC TERM 5254 4162882 - 4162895 + F 71 -3.7 -4.84529 | opp_overlap 4162883, overlap 4162876 4162875 4162883 TCAAATTAAGCAGAA AGCCC AGTC GGGCC TTTTTGCGTTTCTAC TERM 5255 4162894 - 4162883 - f 71 -7.2 -4.11938 | opp_overlap 4162882 4162876 4162875 4162883 CAAATTAAGCAGAAA GCCC AGTC GGGC CTTTTTGCGTTTCTA murB 4162994 - 4164022 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 5256 4164377 - 4164395 + G 81 -9.6 -4.08064 | opp_overlap 4164386, overlap 4164363 4164387 GCCGTGGTCGCCGGG GGCGGAAA TGG TTTTCGCC TTTTGGCGCAAACTT TERM 5257 4164387 - 4164408 + G 74 -8.7 -3.90766 | opp_overlap 4164386, overlap 4164377 CCGGGGGCGGAAATG GTTTTCGCC TTTT GGCGCAAAC TTATATTTGTCGATG birA 4164019 - 4164984 + | biotin--protein ligase TERM 5258 4165006 - 4164989 - T 88 -8.4 -4.80417 | CAGAAAAATAAGAAA GGGGAG TATTCG CTCCCC TGCAAATTATTTGCG coaA 4166119 - 4165013 - | pantothenate kinase TERM 5259 4166565 - 4166553 - H 73 -7.7 -4.15222 | opp_overlap 4166549 ACCGGCTCGAATAAA GAGAG CTT CTCTC GATATTCAGTGCAGA TERM 5260 4166927 - 4166911 - g 70 -4.4 -4.4715 | gap 1, opp_overlap 4166911 TTTGAACGTACAAAA CCGCACG TTAA CGT-CGG TACTATCGGCCACGT tufB 4166881 - 4168065 + | elongation factor Tu TERM 5261 4168129 - 4168088 - f 88 -14.5 -3.0792 | opp_overlap 4168089 4168100, overlap 4168100 TAACATTTGACGCAA TGCGCACTAAAAGGGCATC ATTT GATGCCCTTTTTGCACGCT TTCGTACCAGAACCT TERM 5262 4168089 - 4168128 + F 100 -13.6 -3.72576 | opp_overlap 4168088 4168100, overlap 4168100 AACATTTGACGCAAT GCGCACTAAAAGGGCATC ATTT GATGCCCTTTTTGCACGC TTTCGTACCAGAACC TERM 5263 4168117 - 4168100 - f 91 -11.3 -4.2679 | opp_overlap 4168089 4168100, overlap 4168088 CAATGCGCACTAAAA GGGCATC ATTT GATGCCC TTTTTGCACGCTTTC TERM 5264 4168100 - 4168117 + F 95 -11.3 -4.60924 | opp_overlap 4168100 4168088, overlap 4168089 CAATGCGCACTAAAA GGGCATC ATTT GATGCCC TTTTTGCACGCTTTC TERM 5265 4168498 - 4168487 - g 70 -4.4 -4.5442 | opp_overlap 4168487 CTGTTAACGACAAAA GGTA AAGC TACC ATTGCTTTTGCCCGT TERM 5266 4168587 - 4168601 + G 73 -11.4 -2.65264 | CCACGCTGATTGTGG CTGCGG TTA CCGCAG TAATGTCACTGATCC secE 4168295 - 4168678 + | preprotein translocase subunit SecE nusG 4168680 - 4169225 + | transcription antitermination protein NusG TERM 5267 4169260 - 4169242 - f 75 -3 -5.1675 | CCAGCGATCAAAAAA GCGGCGAT TTA ATCGTTGC ACAAGGCGTGAGATT TERM 5268 4169260 - 4169298 + F 100 -13.3 -4.8543 | opp_overlap 4169265, overlap 4169265 4169296 GCGATTTAATCGTTG CACAAGGCGTGAGATTG GAATA CAATTTCGCGCCTTTTG TTTTTATGGGCCTTG TERM 5269 4169265 - 4169293 + F 100 -11.8 -5.35224 | opp_overlap 4169265, overlap 4169260 TTAATCGTTGCACAA GGCGTGAGATTG GAATA CAATTTCGCGCC TTTTGTTTTTATGGG TERM 5270 4169296 - 4169325 + F 90 -7.3 -5.36441 | gap 1, overlap 4169260 4169299 ACAATTTCGCGCCTT TTGTTTTTATGGGC CTT GCCCGTA-AAACGA TTTTTTATATCACGG rplK 4169384 - 4169812 + | 50S ribosomal protein L11 TERM 5271 4170359 - 4170319 - g 74 -3.1 -4.98255 | opp_overlap 4170327 CCGTAACGACAAAAA CGGCATCATCCACACCACC ATC GGTAAAGTGGACTTTGACG CTGACAAACTGAAAG rplA 4169816 - 4170520 + | 50S ribosomal protein L1 rplJ 4170933 - 4171430 + | 50S ribosomal protein L10 rplL 4171497 - 4171862 + | 50S ribosomal protein L7/L12 TERM 5272 4171902 - 4171927 + F 100 -17.7 -4.64766 | opp_overlap 4171895 4171893 4171892, overlap 4171873 AGAAATCAGGCTGAT GGCTGGTGACT TTTT AGTCACCAGCC TTTTTGCGCTGTAAG TERM 5273 4172998 - 4172977 - g 81 -6.5 -4.87665 | gap 1 GTGTACGTAGAAAAA GGC-CGCCGT ATC ACTGCGCGCC ACATTCGCCAGCTGG TERM 5274 4175224 - 4175208 - g 86 -6.5 -5.10033 | overlap 4175209 CGAAGAGAAACAAAA TCAGCTG GAA CAGCTGG CTGAGCAGTATGACG TERM 5275 4175223 - 4175209 - g 77 -10 -3.64393 | overlap 4175208 GAAGAGAAACAAAAT CAGCTG GAA CAGCTG GCTGAGCAGTATGAC TERM 5276 4176112 - 4176102 - g 74 -3.2 -4.91459 | overlap 4176090 CAAGATGTATAAAAA CATC GTG GACG GCAACCATCAGATGG rpoB 4172182 - 4176210 + | DNA-directed RNA polymerase subunit beta TERM 5277 4176229 - 4176258 + F 70 -9.2 -3.4252 | opp_overlap 4176247, overlap 4176230 TCGCTCAAACAGGTC ACTGCTGTCGGG GTAAAA CCCGGCAGCGGA TTGTGCTAACTCCGA TERM 5278 4176230 - 4176257 + F 78 -12.7 -2.65298 | opp_overlap 4176247, overlap 4176229 CGCTCAAACAGGTCA CTGCTGTCGGG GTAAAA CCCGGCAGCGG ATTGTGCTAACTCCG TERM 5279 4177627 - 4177643 + G 72 -7.9 -3.87373 | opp_overlap 4177616 4177626 4177623 CGAAGGTAAAGCTAT CCAGCTG CAC CCGCTGG TTTGTGCGGCATATA TERM 5280 4178122 - 4178138 + G 78 -7.9 -4.40561 | CTGCTACCGCATTCT CGGTCTG AAA CCGACCG TTATTTTTGCGGACC rpoC 4176287 - 4180510 + | DNA-directed RNA polymerase subunit beta' TERM 5281 4180537 - 4180550 + T 100 -9.5 -5.65177 | opp_overlap 4180537 CAAATAACGTAAAAA CCCGC TTCG GCGGG TTTTTTTATGGGTGT TERM 5282 4180550 - 4180537 - T 100 -9.5 -4.8384 | opp_overlap 4180537 CAAATAACGTAAAAA CCCGC TTCG GCGGG TTTTTTTATGGGTGT thiH 4181885 - 4180752 - | thiamine biosynthesis protein ThiH thiG 4182652 - 4181882 - | thiazole synthase thiS 4182854 - 4182654 - | sulfur carrier protein ThiS TERM 5283 4182702 - 4182680 - G 72 -4.9 -4.70626 | overlap 4182671 CAATAACCTGAAAAA GCAGGAT CTGGTCGCC ATCCTGC ACGATATGTTGCGTC thiF 4183593 - 4182838 - | thiamine biosynthesis protein ThiF thiE 4184221 - 4183586 - | thiamine-phosphate pyrophosphorylase thiC 4186116 - 4184221 - | thiamine biosynthesis protein ThiC yjaE 4186826 - 4186350 - | anti-RNA polymerase sigma 70 factor TERM 5284 4186978 - 4186942 - g 75 -4.3 -4.78149 | opp_overlap 4186941, overlap 4186945 4186947 CGTATAATTGAAAAA TTAGATCACGGCTGGTG GGT CGTCAGCCATGAACAAA AATTATGGTTGCCGA nudC 4186921 - 4187694 + | NADH pyrophosphatase TERM 5285 4187852 - 4187867 + G 74 -6 -4.56358 | opp_overlap 4187849, overlap 4187853 AATATAAAGCCACGC GCGCCC AGGC GGGCGA TTTTATGTCGCTGTG TERM 5286 4187901 - 4187889 - g 74 -6.2 -4.56597 | GTCGCTGTGCAAAAA CGCC GAGCT GGCG TGCGAAGTGACTTTG hemE 4187734 - 4188798 + | uroporphyrinogen decarboxylase TERM 5287 4188799 - 4188818 + F 83 -6.4 -4.91429 | opp_overlap 4188801, overlap 4188801 CAGTATCACCGCTAA GAGCCTGA TCCA TCAGGCTA TTTTATTTGCCATTT TERM 5288 4188801 - 4188816 + F 79 -9 -4.06281 | opp_overlap 4188801, overlap 4188799 GTATCACCGCTAAGA GCCTGA TCCA TCAGGC TATTTTATTTGCCAT TERM 5289 4189042 - 4189030 - g 72 -7.7 -3.89822 | GATCGACTCGATAAA GATCC ACC GGATC TGATCGCCGGAGCCG TERM 5290 4189364 - 4189354 - g 71 -2.4 -5.00616 | opp_overlap 4189354 GGCGTGGCGAAAAAA CGGC TCT GCGG TAAATTCGAACCGCT nfi 4188955 - 4189626 + | endonuclease V yjaG 4189669 - 4190259 + | hypothetical protein hupA 4190446 - 4190718 + | transcriptional regulator HU subunit alpha TERM 5291 4190764 - 4190749 - f 77 -10.4 -3.35639 | opp_overlap 4190749 AACAGTTTTAACGAA GGGGTG GTTT CACCCC TTTTGTCTTTCTGGC TERM 5292 4190749 - 4190764 + F 100 -10.4 -4.84918 | opp_overlap 4190749 AACAGTTTTAACGAA GGGGTG GTTT CACCCC TTTTGTCTTTCTGGC yjaH 4190791 - 4191426 + | hypothetical protein zraP 4191994 - 4191428 - | zinc resistance protein TERM 5293 4191983 - 4191956 - G 81 -6.2 -4.85267 | opp_overlap 4191956 ATAAACGAGTAAAAA TGACTCGCCTGC TGCG GGTAGCGAGTCA TTTTTACTCATTGAA TERM 5294 4191956 - 4191983 + g 90 -7.8 -4.81083 | gap 1, opp_overlap 4191956 ATAAACGAGTAAAAA TGACTCGCCTGCT GCG GGTAG-CGAGTCA TTTTTACTCATTGAA TERM 5295 4192289 - 4192327 + G 77 -11.6 -3.14344 | TCCGGCTCGCGCGTC GGCATGGGGATGCGCATG CAT CATGCGCAGCAGCAGGCC TTACTGGAAGAAATG hydH 4192100 - 4193467 + | sensor protein ZraS TERM 5296 4194740 - 4194713 - g 90 -10.4 -4.36914 | opp_overlap 4194713 CGGCGCTGGAGAAAA CGGGCGGCAACA AAAC CGAAGCCGCCCG TCAGTTAGGGATCAC hydG 4193464 - 4194789 + | transcriptional regulatory protein ZraR purD 4196075 - 4194786 - | phosphoribosylamine--glycine ligase TERM 5297 4195362 - 4195398 + g 72 -8.6 -3.81259 | gap 1, overlap 4195364 AACTTCATCGGTTAC TACCGGCGCGG-GGGAG TAAG CGCCCATCCCGCCGGTG TTTGGTCCGTTATCT TERM 5298 4195364 - 4195396 + g 71 -9 -3.48506 | gap 1, overlap 4195362 CTTCATCGGTTACTA CCGGCGCGG-GGGAG TAAG CGCCCATCCCGCCGG TGTTTGGTCCGTTAT purH 4197676 - 4196087 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 5299 4197747 - 4197706 - R 100 -20.5 -2.96216 | opp_overlap 4197741 4197743, overlap 4197708 4197743 TTTGACTATTACAGA GAGCGTTAGCTGAATTTTT CGCG AAAAACTCAGCTAACGCCC CTAACGGGGCATCCT TERM 5300 4197745 - 4197708 - R 100 -19.5 -3.03443 | opp_overlap 4197741 4197743, overlap 4197706 4197743 TGACTATTACAGAGA GCGTTAGCTGAATTTTT CGCG AAAAACTCAGCTAACGC CCCTAACGGGGCATC TERM 5301 4197792 - 4197810 + r 73 -2.4 -5.20783 | opp_overlap 4197790, overlap 4197796 ATTGTAACGAAAACG TTTGCG CAACGCT CGCGAA TTTTTCTCTTTCAAT TERM 5302 4198079 - 4198065 - R 76 -4.2 -5.0916 | opp_overlap 4198065, overlap 4198066 4198073 GGTTGAAGAGAAAAA TCCTGA AAT TCAGGG TTGACTCTGAAAGAG TERM 5303 4198111 - 4198099 - R 71 -7.7 -4.00532 | CTCTGAAAGAGGAAA GCGTA ATA TACGC CACCTCGCGACAGTG TERM 5304 4199905 - 4199892 - R 75 -6.7 -4.41177 | overlap 4199896 GATAGAAAGTGAAAA GCAAG GCGT CTTGC GAAGCAGACTGATAC TERM 5305 4200131 - 4200107 - R 71 -8 -3.93061 | gap 1, opp_overlap 4200114 AGCTGAAAATTGAAA CACTGAACAAC GAAA GTTGTTC-GTG AGTCTCTCAAATTTT TERM 5306 4200685 - 4200673 - R 72 -6.2 -4.2354 | GAAAGGCGAAAAGAA CCCC GGCGA GGGG AGTGAAAAAGAACCT TERM 5307 4203174 - 4203153 - R 74 -8.7 -3.91196 | CTGATACAGATTAAA TCAGAACGC AGAA GCGGTCTGA TAAAACAGAATTAGC TERM 5308 4203321 - 4203340 + r 100 -10 -4.7629 | opp_overlap 4203321 TCAAATTAAGCGAAA GGCTATCC GTCA GGATGGCC TTTTTGCGTTGGTGA yjaB 4203862 - 4203419 - | hypothetical protein metA 4204019 - 4204948 + | homoserine O-succinyltransferase TERM 5309 4204994 - 4205009 + F 100 -10.4 -5.63517 | CAGCACCTTACCTCA GGCACC TTCG GGTGCC TTTTTTATTTCCGAA TERM 5310 4206195 - 4206209 + F 71 -7 -4.15044 | overlap 4206196 GGTGCTTTTGCGATG GGCGGC ATG GCCGCG TTTATTCCGAGCAAA TERM 5311 4206196 - 4206208 + F 73 -10.5 -3.08812 | overlap 4206195 GTGCTTTTGCGATGG GCGGC ATG GCCGC GTTTATTCCGAGCAA TERM 5312 4207049 - 4207034 - g 77 -3.2 -5.0538 | GGTGAGTCGAAAAAA GGCTAC ATCA ACAGCC TCGGTGCACTGACTG aceA 4206845 - 4208149 + | isocitrate lyase TERM 5313 4208614 - 4208635 + T 77 -3.6 -5.09895 | GTTGCCGGATTACCC GCGCTTCG AGATTG CGGAGAGC TTTTTTAACTCCGTG TERM 5314 4208670 - 4208693 + T 81 -5.2 -5.20783 | overlap 4208671 GTCGGTTATTTGACC ACCGCTCG CTTACTCC CGAGCGGC TTTTTATCTTTAGCT TERM 5315 4208671 - 4208692 + T 72 -8.7 -3.70843 | overlap 4208670 TCGGTTATTTGACCA CCGCTCG CTTACTCC CGAGCGG CTTTTTATCTTTAGC TERM 5316 4209549 - 4209534 - T 78 -4.7 -5.07053 | AAGCAGCGGAAAAAA TCACC GATCTT GGTGA GCAGATTGTAATTCG TERM 5317 4209601 - 4209577 - T 70 -9.3 -3.31144 | opp_overlap 4209577 TCGCCATCTCTATAA TCGAGCGGC GGATGGT GCCGCTCAA TATCTGGCTGGAACA TERM 5318 4209727 - 4209747 + T 84 -5.3 -5.37345 | overlap 4209728 4209728 TTAAAAACTTCGGTG TCACCCGTC ACG GGCGTGTGG TTTTTTATGATTACG iclR 4213364 - 4212540 - | transcriptional repressor IclR TERM 5319 4213388 - 4213402 + H 81 -3.6 -5.30348 | CCTTTTTCTGTATCG TGGAAA TTA TTTTCA TTTTTATTGTTAGCT TERM 5320 4214717 - 4214701 - g 72 -6.5 -4.41237 | overlap 4214703 ATCAAAGAAGAGAAA TACAGCG AGG CGCTGGA TGTGGCGCGTCAGCA TERM 5321 4214715 - 4214703 - g 76 -9.1 -3.79177 | overlap 4214701 CAAAGAAGAGAAATA CAGCG AGG CGCTG GATGTGGCGCGTCAG metH 4213564 - 4217247 + | B12-dependent methionine synthase TERM 5322 4217276 - 4217306 + F 90 -10.4 -4.29106 | opp_overlap 4217280, overlap 4217278 4217280 CACTTTTCCTTACAA CAAACAGGGCGCTC AAT GAGTGCCCTGTCTC TTTATTAATATGAAA TERM 5323 4217278 - 4217304 + F 95 -13 -3.7456 | opp_overlap 4217280, overlap 4217276 4217280 CTTTTCCTTACAACA AACAGGGCGCTC AAT GAGTGCCCTGTC TCTTTATTAATATGA TERM 5324 4217280 - 4217302 + F 100 -15.6 -3.44527 | opp_overlap 4217280, overlap 4217278 4217276 TTTCCTTACAACAAA CAGGGCGCTC AAT GAGTGCCCTG TCTCTTTATTAATAT TERM 5325 4217302 - 4217280 - f 95 -13.4 -4.30719 | opp_overlap 4217278 4217276 4217280 TTTCCTTACAACAAA CAGGGCGCTC AAT GAGTGCCCTG TCTCTTTATTAATAT TERM 5326 4217543 - 4217561 + G 77 -10.2 -3.70417 | overlap 4217544 4217553 TTCGAACCGGCGTAA TGCGCGTC TTC GGCGCGCG TTTGCGTACTGTCCT TERM 5327 4217544 - 4217560 + G 73 -11.5 -2.81768 | overlap 4217543 4217553 TCGAACCGGCGTAAT GCGCGTC TTC GGCGCGC GTTTGCGTACTGTCC TERM 5328 4217625 - 4217598 - g 86 -4 -5.41143 | GAGCGTCGAAAAAAA GCCGCTCGCC TTTTGCGC GGGGATCGGC GTTACCGCACTGGTA TERM 5329 4219015 - 4219032 + G 70 -4.1 -4.68384 | TTACTGGGAGATATG CAGCG CCTGAACT CGCTG TTTTGTTCGGTGGCT yjbB 4217467 - 4219098 + | putative alpha helix protein TERM 5330 4219182 - 4219162 - T 79 -11.2 -3.45742 | opp_overlap 4219161, overlap 4219160 GCACTATGAACAAGA TGCCGGAT CATGC ATCCGGCA ATTCACTTAAAAACG pepE 4219878 - 4219189 - | peptidase E TERM 5331 4219788 - 4219774 - G 81 -9.2 -4.02534 | AGCGAAAGGGATAAA CACCGC TGA GCGGCG ACCCTGCAACTGTTC TERM 5332 4220126 - 4220151 + r 79 -3.2 -5.39755 | opp_overlap 4220126, overlap 4220128 4220131 GTACTTTGCCACCAA TTTGAGCGCC CCTTAA GGCGCTGATA TTTTTTATCCTTCTC sorE 4221489 - 4220260 - | putative L-sorbose-1-P-reductase sorM 4222329 - 4221541 - | putative sorbose-permease PTS system IID component sorA 4223137 - 4222340 - | putative sorbose-permease PTS system IIC component TERM 5333 4222534 - 4222515 - G 74 -2.8 -4.91852 | CCGAGGAAAAAGAAA GGCATCAA ATAT TTCACGCC CATCATACGTAGCAC sorB 4223697 - 4223203 - | putative sorbose-permease PTS system IIB component sorF 4224104 - 4223697 - | putative sorbose-permease PTS system IIA component TERM 5334 4224103 - 4224092 - G 79 -2.2 -5.24129 | CGTGGGCACAAAAAA TGGC GTTG ACCA TAAAGCCTCCTTAGC sorD 4224920 - 4224114 - | sorbitol-6-phosphate 2-dehydrogenase TERM 5335 4224365 - 4224377 + g 71 -9.1 -3.55815 | GCGCGATACCGACCA CACGG ATA CCGTG TTTACCCAGCTCTTT SFV_4099 4225937 - 4224990 - | putative sor-operon regulator TERM 5336 4227112 - 4227092 - g 72 -4.5 -4.61527 | overlap 4227094 AAAACGGCGGAAAAA GGCGGTCGC CCG GCGTCCAAC GGTAAGCGTTTTACC yjbC 4226285 - 4227157 + | 23S rRNA pseudouridine synthase F yjbD 4227508 - 4227290 - | hypothetical protein SFV_4102 4227749 - 4227483 - | IS2 ORF2 SFV_4103 4228322 - 4227804 - | IS2 ORF2 SFV_4104 4228711 - 4228346 - | insertion sequence 2 OrfA protein TERM 5337 4230308 - 4230321 + G 74 -2.3 -5.14563 | GGTAAGATCAAATCT CCGGT TATC GCTGG TTTTTTAATCAGCAA yjdH 4229126 - 4230757 + | sensory histidine kinase DcuS yjdG 4230754 - 4231473 + | DNA-binding transcriptional activator DcuR TERM 5338 4232949 - 4232938 - g 74 -2.2 -5.0538 | GTCTATCTCAAAAAA CGAA GTCT TCCG TTCCGGTATGATCGC dcuB 4232045 - 4233385 + | anaerobic C4-dicarboxylate transporter TERM 5339 4233393 - 4233424 + F 76 -8.7 -4.13767 | opp_overlap 4233388 TCTTATAAATGCACT TTGCGTGCCGC CCGTGACTAC GCGGCACGCCA TTTTCGAATAACAAA TERM 5340 4234108 - 4234092 - g 73 -3.7 -4.81249 | overlap 4234093 CGGCAAACTGAAAAA CTTCCTC GTC GAGAAAA TGCGTACCCTCGGTA TERM 5341 4234128 - 4234109 - g 75 -7.2 -4.36914 | gap 1 TCCTCGTCGAGAAAA TGC-GTACC CTC GGTACTGCA GCCTGCCCGCCGTAC fumB 4233463 - 4235109 + | fumarate hydratase class I, anaerobic yjdF 4235232 - 4235861 + | hypothetical protein TERM 5342 4235949 - 4235977 + T 75 -6.1 -4.45151 | opp_overlap 4235948 CATTACATTAAGACG TGGCCTGAT AAACATATCGC ATCAGGCCA TTTTCGTTAGCTATT melB 4237409 - 4236000 - | melibiose:sodium symporter melA 4238879 - 4237524 - | alpha-galactosidase TERM 5343 4237634 - 4237659 + g 76 -7.6 -4.18494 | gap 1 TATGCGGGTCCATCA TCGCGG-CGTG GTAAA CACGGTCGCGA TTTTCCGTAAGAATA TERM 5344 4238237 - 4238194 - G 80 -11.6 -3.28712 | opp_overlap 4238193 4238227, overlap 4238227 TGCCCTGCTTCATAA GCCGCCAGCAGTTCCGGGTA GAGA TTCACGTAACTGCCGTCGGC GGTTTTGCGCTCCAG TERM 5345 4238227 - 4238239 + g 70 -6.9 -4.13945 | opp_overlap 4238194 4238227, overlap 4238193 TAGAGATTCACGTAA CTGCC GTC GGCGG TTTTGCGCTCCAGCT TERM 5346 4238958 - 4239011 + H 78 -12.2 -2.54896 | gap 3, opp_overlap 4238968, overlap 4239002 CTTCCAGGTTGAGCA TTCCCATAAACTCAGA--TCCTGCGTG AAG CA-GCAGTAAATCTGAGTTTATGGGAA TAAATTACCTGAAAA TERM 5347 4239721 - 4239710 - g 74 -2.2 -5.03994 | gap 1, opp_overlap 4239717 4239719 GCGCACACACAAAAA CAGCG TCT CGC-G CCATGCGCAATTTTA TERM 5348 4239717 - 4239731 + G 75 -5.6 -4.66537 | opp_overlap 4239710, overlap 4239719 CACAAAAACAGCGTC TCGCGC CAT GCGCAA TTTTATGTTAGCCAG melR 4239162 - 4240070 + | DNA-binding transcriptional regulator MelR TERM 5349 4241390 - 4241400 + G 70 -6.8 -4.07687 | opp_overlap 4241390 ACCTGGCGATCACAA CGGT CCT ACCG TTTTCGCCACCCACT TERM 5350 4241726 - 4241715 - g 70 -5.8 -4.20367 | CCGTGGAACAAAGAA GTCG TCAC CGAC CCACAAACCGGCAAA TERM 5351 4241934 - 4241923 - g 72 -7.2 -4.20918 | opp_overlap 4241933 GTGAACTGGAAGAAA CCGG TGTT CCGG CGGCGCTGGTCACTG TERM 5352 4242221 - 4242203 - g 90 -7.4 -4.86731 | CTGGCTGAAAGAAAA CAACCCTG GCG CACGGTTG AACGAAGCCTATTCC adiA 4240269 - 4242536 + | biodegradative arginine decarboxylase TERM 5353 4242585 - 4242595 + F 79 -8.2 -4.2349 | overlap 4242581 AACATTACGCCGCCT GGCC TTA GGCC TTTTGAGTATGGCAA TERM 5354 4242654 - 4242672 + F 100 -8.8 -5.85178 | AATGTCATACTTTTT GCGCGG CCCCACC CCGCGC TTTTTTTTGCCTGTT TERM 5355 4243531 - 4243541 + G 75 -5.4 -4.69487 | opp_overlap 4243531 4243529 CCTGCGGCTACAACA GTAC GTC GTAC TTTATTTCTGTCTTT adiY 4242861 - 4243622 + | putative ARAC-type regulatory protein TERM 5356 4243793 - 4243825 + G 80 -12 -3.33162 | overlap 4243796 CTCACAAAGTGGGCT TAATCCCCGTCACC CTGAT GGTGTCGGGGAATA TTATGGGGTCAGGTG TERM 5357 4243796 - 4243822 + G 84 -13.7 -2.53822 | overlap 4243793 ACAAAGTGGGCTTAA TCCCCGTCACC CTGAT GGTGTCGGGGA ATATTATGGGGTCAG yjdE 4243759 - 4245096 + | arginine:agmatin antiporter TERM 5358 4245118 - 4245152 + F 75 -6.7 -4.54727 | gap 1, opp_overlap 4245123 4245124, overlap 4245124 TTAATCCAGCAAACA TAAAAGCCAACCTTAA GAAC TTAAGGTTGG-TTTAA TTTTGCTTTGCGAGC TERM 5359 4245148 - 4245123 - f 93 -9.1 -4.82128 | opp_overlap 4245118 4245124, overlap 4245124 CCAGCAAACATAAAA GCCAACCTTAA GAAC TTAAGGTTGGT TTAATTTTGCTTTGC TERM 5360 4245147 - 4245124 - f 88 -12.6 -3.48193 | opp_overlap 4245124 4245118, overlap 4245123 CAGCAAACATAAAAG CCAACCTTAA GAAC TTAAGGTTGG TTTAATTTTGCTTTG TERM 5361 4245124 - 4245147 + F 95 -12.6 -4.29472 | opp_overlap 4245123 4245124, overlap 4245118 CAGCAAACATAAAAG CCAACCTTAA GAAC TTAAGGTTGG TTTAATTTTGCTTTG yjdB 4245251 - 4246843 + | putative cell division protein basR 4246840 - 4247508 + | DNA-binding transcriptional regulator BasR basS 4247518 - 4248609 + | sensor protein BasS/PmrB TERM 5362 4248634 - 4248615 - T 72 -5 -4.65722 | gap 1, overlap 4248617 CCAGATATAAAGAAA GC-TGCTGA CCA CCAGCACGC TGAACACGGTAGTTA TERM 5363 4248744 - 4248774 + T 78 -12.6 -2.66593 | overlap 4248740 CCTTAAGAGTTCAAT TGGCCTGATAAGAC AGC GTCACATCAGGCCA TCCGTTTCAGCTTAT proP 4250288 - 4248786 - | proline/glycine betaine transporter yjcZ 4251430 - 4250552 - | hypothetical protein yjdA 4253655 - 4251427 - | hypothetical protein TERM 5364 4252892 - 4252904 + g 77 -3.4 -5.03314 | GAGGCGCGTGCCAGC TGCT GGTTA AGCA TTTTTTGCAGATGCG TERM 5365 4254002 - 4254014 + G 95 -9.1 -5.08011 | AATTGCGGCCTTTTT CGGCA ATC TGCCG TTTTTTGGCGCTTTT phnA 4253910 - 4254392 + | hypothetical protein TERM 5366 4254420 - 4254474 + F 74 -10.5 -3.21276 | gap 1, opp_overlap 4254420 4254421 4254446, overlap 4254421 4254444 4254450 4254463 CGGTAAGCCGGATAA GGCGCTCGCGCCGCATCCGGCA-ACG ATGC CGACTGCCTGATGCGACGCTTGCGCG TCTTATCAGGCAGCC TERM 5367 4254474 - 4254420 - f 93 -14.9 -3.33261 | gap 1, opp_overlap 4254420 4254421 4254444 4254450 4254463, overlap 4254421 4254446 CGGTAAGCCGGATAA GGCGCTCGCGCCGCATCCGGCAA-CG ATGC CGACTGCCTGATGCGACGCTTGCGCG TCTTATCAGGCAGCC TERM 5368 4254473 - 4254421 - f 100 -18.4 -2.59742 | gap 1, opp_overlap 4254421 4254420 4254444 4254450 4254463, overlap 4254420 4254446 GGTAAGCCGGATAAG GCGCTCGCGCCGCATCCGGCAA-CG ATGC CGACTGCCTGATGCGACGCTTGCGC GTCTTATCAGGCAGC TERM 5369 4254421 - 4254473 + F 83 -14 -2.52623 | gap 1, opp_overlap 4254420 4254421 4254446, overlap 4254420 4254444 4254450 4254463 GGTAAGCCGGATAAG GCGCTCGCGCCGCATCCGGCA-ACG ATGC CGACTGCCTGATGCGACGCTTGCGC GTCTTATCAGGCAGC TERM 5370 4254444 - 4254496 + F 73 -10.6 -2.98088 | gap 1, opp_overlap 4254421 4254420 4254446, overlap 4254421 4254420 4254450 4254463 GCCGCATCCGGCAAC GATG-CCGACTGCCTGATGCGACGC TTGC GCGTCTTATCAGGCAGCCTCTCATC TGTATAAATTTCGAA TERM 5371 4254450 - 4254489 + F 100 -17.2 -2.90797 | opp_overlap 4254421 4254420 4254446, overlap 4254421 4254420 4254444 4254463 TCCGGCAACGATGCC GACTGCCTGATGCGACGC TTGC GCGTCTTATCAGGCAGCC TCTCATCTGTATAAA phnB 4254550 - 4254993 + | hypothetical protein TERM 5372 4255536 - 4255516 - g 74 -8.9 -3.96327 | ACCGGCGAGCAGAAA CAGCGCGCG TTA CAGGCGCTG ACCCGCGTTGGCATG phnC 4255126 - 4255914 + | phosphonate/organophosphate ester transporter subunit TERM 5373 4256581 - 4256567 - g 76 -7.8 -4.21936 | overlap 4256568 TCGACAAGCTGAAAA CCTCCG CGC CGGAGA AGCTTAAAGAGCTGA phnD 4255939 - 4256955 + | periplasmic binding protein component of phosphonate transporter phnE 4257007 - 4257234 + | membrane channel protein component of phosphonate transporter insB 4257731 - 4257228 - | IS1 ORF2 SFV_4128 4257824 - 4258126 + | putative IS1 encoded protein TERM 5374 4258489 - 4258467 - g 90 -7.6 -4.85599 | GCCACGGTAGAAAAA GCCCGTGCCG CCG CGAAACAGGC CACAGATACATTACG TERM 5375 4258581 - 4258567 - g 88 -12.8 -3.62597 | opp_overlap 4258576 4258578 TTGACCGTGCAAGAA CGGCGC AGC GCGCCG CAGAAGCGGATCTTA yjcR 4258152 - 4259123 + | multidrug resistance protein MdtN TERM 5376 4259371 - 4259395 + G 71 -2.7 -4.8048 | overlap 4259374 4259374 CTTGTTTGTGGTTGC CACGGTGCTGG AGA TCGGCAGCCTG TTTTTGATCTACAAA yjcQ 4259123 - 4261165 + | multidrug efflux system protein MdtO TERM 5377 4261316 - 4261291 - g 72 -6.9 -4.21141 | gap 1 CCGGAACAAATCAAA CTGGC-CGATGA TAT TCATCTTGCCAG CTCCGGCTGGCCGCA TERM 5378 4262143 - 4262160 + G 70 -4.1 -4.62872 | overlap 4262144 GCGTTGTTCTATCCG AGCTTTG ATAT CAAAGCG TTTTTCGGCCTTGAT yjcP 4261162 - 4262628 + | putative outer membrane efflux protein MdtP TERM 5379 4262635 - 4262660 + F 95 -11.9 -4.10552 | overlap 4262637 AAAAAATAAAATGTC TGCCGCGTGAT GGCT GTCACGCGGTA TTTCGTTTCGTCACG TERM 5380 4262637 - 4262658 + F 88 -12.3 -3.64541 | overlap 4262635 AAAATAAAATGTCTG CCGCGTGAT GGCT GTCACGCGG TATTTCGTTTCGTCA TERM 5381 4263574 - 4263539 - f 93 -9.9 -4.69053 | gap 1 CATTATTGAAGAAAA TCTGTACGACAAAGCG TTCGT CGCTTC-CCGTACAGA AGGCTTTGAAGAGTA TERM 5382 4264140 - 4264129 - f 77 -7.2 -4.48987 | TCTTTATAACCAAAA CCGC GTCG GCGG CGGATGTCATTTTGC TERM 5383 4264687 - 4264654 - f 74 -8.3 -3.91897 | gap 1 CTGGCTACGCACAAA TCAATACCGAAGACGC CAA ACGTCTG-GGTATTGA AGATGAGGCATTGGT TERM 5384 4264915 - 4264863 - f 73 -7.9 -4.19177 | gap 4, opp_overlap 4264899 ACGCCGGAATACAAA TACTGCGCCGTGCGCGTCGAGCCGATC TCC GATCAGCGCG-C-CGC-CGA-GCAGTA CGTGATTGACGAGTA TERM 5385 4264957 - 4264946 - f 74 -5.8 -4.70626 | overlap 4264947 CAACAAGTTGAAAAA TCGC CTGC GCGA AGCGGCACTGGCGTA TERM 5386 4264988 - 4265007 + F 100 -13.6 -5.66684 | ATACAGTCCTTTCTA CAGCCTCC TTTC GGAGGCTG TTTTTTTATCCATTC yjcO 4265067 - 4265756 + | hypothetical protein TERM 5387 4265756 - 4265742 - T 80 -7.2 -4.62302 | GAAGAGTTTGAAAAA TTAACC AAC GGTTAA GGTAGGCCTGATAAG TERM 5388 4265795 - 4265761 - T 70 -10.7 -2.53911 | overlap 4265771 CCAACGGTTAAGGTA GGCCTGATAAGACGC GGCAA GCGTCGCATCAGGCA TCCACACATTGCCGG TERM 5389 4265802 - 4265828 + T 86 -13 -3.30203 | opp_overlap 4265804, overlap 4265796 4265804 CATCAGGCATCCACA CATTGCCGGGGG ATA TCCCCGGCAATC TTCAATTATTGATCC TERM 5390 4265804 - 4265826 + T 100 -15.6 -3.21153 | opp_overlap 4265804, overlap 4265802 4265796 TCAGGCATCCACACA TTGCCGGGGG ATA TCCCCGGCAA TCTTCAATTATTGAT TERM 5391 4265826 - 4265804 - T 87 -14.9 -2.91912 | opp_overlap 4265804 4265802 4265796 TCAGGCATCCACACA TTGCCGGGG GATAT CCCCGGCAA TCTTCAATTATTGAT gltP 4267147 - 4265834 - | glutamate/aspartate:proton symporter TERM 5392 4266024 - 4266008 - G 70 -6.5 -4.28713 | AACACCAGCAATAAA CGCCAGA CCT TCCAGCG GAATACCTACGCTAC nrfG 4268085 - 4267489 - | formate-dependent nitrite reductase complex subunit NrfG nrfF 4268465 - 4268082 - | formate-dependent nitrite reductase complex subunit NrfF nrfE 4270062 - 4268458 - | heme lyase subunit NrfE TERM 5393 4268687 - 4268675 - G 100 -10.5 -4.82901 | opp_overlap 4268675 CGTGCTTCATAAAAA CGCCG CTC CGGCG TTAATTCACCAATGC TERM 5394 4268675 - 4268687 + g 76 -10.5 -3.34344 | opp_overlap 4268675 CGTGCTTCATAAAAA CGCCG CTC CGGCG TTAATTCACCAATGC TERM 5395 4269566 - 4269535 - G 83 -12.9 -3.07935 | overlap 4269552 ACTCCAGCCAGGTAA CGCCCAGCGCCAG CAAATT CGGGCGCTGGCCG CATCAAACTCGCCGC nrfD 4271152 - 4270196 - | formate-dependent nitrate reductase, transmembrane protein nrfC 4271820 - 4271149 - | formate-dependent nitrite reductase TERM 5396 4271717 - 4271668 - G 75 -11.5 -2.93703 | gap 1, overlap 4271689 ACAAGCATCCATACA GGCGGTACAGC-CGATGCATAACG ACT CGTCATGCACCATGCCGTAACGCA CCCCATTGATATTCA nrfB 4272383 - 4271817 - | cytochrome c-type protein NrfB nrfA 4273897 - 4272428 - | cytochrome c nitrite reductase TERM 5397 4273252 - 4273270 + g 72 -8 -3.8709 | opp_overlap 4273243 CGCAAACCATCGATT GCTGGTCG AAA CGTCCGGC TTTCTCAAAAGGTTT TERM 5398 4273883 - 4273903 + g 100 -9.7 -5.51353 | overlap 4273884 GGCTTCATCCGAATT GCGCCATTG TTG CAATGGCGG TTTTTATTGTTTTTC TERM 5399 4273884 - 4273902 + g 100 -13.2 -3.87151 | overlap 4273883 GCTTCATCCGAATTG CGCCATTG TTG CAATGGCG GTTTTTATTGTTTTT TERM 5400 4274539 - 4274523 - g 77 -6.5 -4.64676 | opp_overlap 4274523, overlap 4274524 CCATCTGCAAGAAAA CGGCGAT CGC ACCGCCA TCATCTGGGAAGGCG acs 4274257 - 4276215 + | acetyl-CoA synthetase TERM 5401 4276253 - 4276286 + F 73 -9.5 -3.34344 | opp_overlap 4276263, overlap 4276254 4276265 4276266 CGGTAACGGTTTGTA GGCCTGATAAGACGC GACA GCGTCGCATCAGGCA TTGATTGCCGGATGC TERM 5402 4276254 - 4276285 + F 81 -13 -2.60392 | opp_overlap 4276263, overlap 4276253 4276265 4276266 GGTAACGGTTTGTAG GCCTGATAAGACGC GACA GCGTCGCATCAGGC ATTGATTGCCGGATG TERM 5403 4276281 - 4276263 - f 79 -11 -3.30124 | opp_overlap 4276254 4276253 4276265 4276266 TTGTAGGCCTGATAA GACGCGAC AGC GTCGCATC AGGCATTGATTGCCG TERM 5404 4276266 - 4276312 + F 70 -10.7 -2.57931 | opp_overlap 4276263, overlap 4276254 4276253 4276265 4276292 TAGGCCTGATAAGAC GCGACAGCGTCGCATCAGGCA TTGAT TGCCGGATGCGGCGTAAACGC CTTATCCGGCCTACA TERM 5405 4276292 - 4276323 + F 78 -12.2 -2.52464 | overlap 4276266 4276265 GCATCAGGCATTGAT TGCCGGATGCGGCG TAAA CGCCTTATCCGGCC TACATTCGGCAAGGG TERM 5406 4276493 - 4276478 - g 75 -5.4 -4.62783 | overlap 4276479 GAGTTAGTCGAAAAA CGGCAA CGGT TTGCCA CCATCCTGTCGATTA yjcH 4276415 - 4276729 + | hypothetical protein TERM 5407 4276807 - 4276830 + F 70 -9.5 -2.98453 | overlap 4276806 AGCGGGGCCGTAGAG CGCCAGCCA ACGAAC TGGCAGGCG ATTATTATGTTCCTG actP 4276837 - 4278375 + | acetate permease TERM 5408 4278385 - 4278408 + T 100 -16.8 -2.79321 | overlap 4278382 CATTAATCTCTCCCC TTCCCCGGTC GCCT GACCGGGGAA TACTCTTCCTCTCCA TERM 5409 4278477 - 4278462 - T 80 -6.2 -4.80736 | opp_overlap 4278461 TATTAAACAAATAAA CTCATT AAAA AATGAG CGATTTTTGACAGTC insB 4279145 - 4278642 - | IS1 ORF2 SFV_4146 4279220 - 4279429 + | putative IS1 encoded protein TERM 5410 4279624 - 4279682 + T 93 -15.5 -2.76456 | gap 1, opp_overlap 4279620 4279644, overlap 4279644 GAATCATGAATGTTC G-CCCGAGCTAACCTGTTAAAGGTGCAA AAGA TTGCACCTTTTTCAGATTACCTCGGGCC TGGTTACGTCGCTTT TERM 5411 4279644 - 4279661 + T 93 -9.9 -4.67234 | opp_overlap 4279644, overlap 4279624 AGCTAACCTGTTAAA GGTGCAA AAGA TTGCACC TTTTTCAGATTACCT TERM 5412 4279661 - 4279644 - T 75 -9.9 -3.5774 | opp_overlap 4279644 4279624 AGCTAACCTGTTAAA GGTGCAA AAGA TTGCACC TTTTTCAGATTACCT yjcE 4281351 - 4279702 - | hypothetical protein TERM 5413 4281201 - 4281184 - G 74 -2.7 -4.94672 | AAACAAGACTAAAAA GAGTTCA GGAT CAAACTC CACATGCAAACCAAA TERM 5414 4281486 - 4281455 - R 100 -12.4 -4.37658 | opp_overlap 4281461, overlap 4281461 AATGTGCGGAGAAAA TAAAAACGGGCAGC CATT GCCACCCGTTTTCA GAATCCGATGAAAGA TERM 5415 4281480 - 4281461 - R 100 -9.2 -5.54907 | opp_overlap 4281461, overlap 4281455 CGGAGAAAATAAAAA CGGGCAGC CATT GCCACCCG TTTTCAGAATCCGAT yjcD 4282851 - 4281502 - | hypothetical protein TERM 5416 4282679 - 4282695 + g 71 -9.4 -3.53811 | opp_overlap 4282674 GCAACGAAAACTGCC GCAGGC GGGAA GCCTGC TTTACCCAACATACC TERM 5417 4283401 - 4283377 - R 100 -14.4 -4.67651 | opp_overlap 4283377 AGACCGGAAAACAAA CTAAAGCGCC CTTGT GGCGCTTTAG TTTTGTGTTTGCGGA TERM 5418 4283377 - 4283401 + r 100 -14.4 -4.78848 | opp_overlap 4283377 AGACCGGAAAACAAA CTAAAGCGCC CTTGT GGCGCTTTAG TTTTGTGTTTGCGGA soxR 4284021 - 4283557 - | redox-sensing activator of soxS TERM 5419 4283808 - 4283837 + g 70 -5.7 -4.3534 | gap 1 ACGCTTCACCAATGG TCGC-CAGCGGAAT GCC AATACGCTGAGCGA TTTTGATAATTGCGA soxS 4284107 - 4284430 + | DNA-binding transcriptional regulator SoxS TERM 5420 4284436 - 4284465 + T 83 -12.9 -3.19389 | CCGCCTGTAGTTTTA TTGCCCGCGCG TTAACTCC CGCGCGGGTAA TTGCTCCATCCATTG yjcC 4286019 - 4284433 - | hypothetical protein TERM 5421 4284933 - 4284923 - G 72 -6.8 -4.2828 | CGTGACGTATGAAAA TCGG AGG CCGA CAGGTTAATAGAAAC TERM 5422 4285617 - 4285607 - G 82 -2.4 -5.38047 | TAGCCAGAGAAAAAA GGCG TAT CGCG GTAATAATAGATAGA TERM 5423 4286325 - 4286345 + H 79 -4.1 -5.1523 | opp_overlap 4286325 AGTTCACAAAATTAA TGAAACA AACAGAG TGTTTCA TTTTTGTGTTCTGCA yjcB 4286379 - 4286729 + | hypothetical protein insB 4286993 - 4287496 + | IS1 ORF2 TERM 5424 4287512 - 4287534 + T 100 -13.5 -5.28176 | opp_overlap 4287515 GTTGGAGTCATTACC GAAGCCTCC ATAAC GGAGGCTTC TTTTTTATGGCTGGC TERM 5425 4287531 - 4287515 - T 70 -10.1 -3.10164 | opp_overlap 4287512 GGAGTCATTACCGAA GCCTCCA TAA CGGAGGC TTCTTTTTTATGGCT ssb 4288140 - 4287604 - | single-strand DNA-binding protein uvrA 4288394 - 4291216 + | excinuclease ABC subunit A TERM 5426 4291224 - 4291242 + T 100 -12.4 -4.55128 | overlap 4291232 TGCTGTAATCGTTAA GGCCGCTT TCT GAGCGGCC TTTTCCTTTCAGAGT yjbR 4291607 - 4291251 - | hypothetical protein TERM 5427 4291439 - 4291453 + g 74 -7.8 -4.07568 | overlap 4291438 GACGTAGCAGCTCCG CCAGCT CCG GGCTGG TTTTCAGCGAAACAG yjbQ 4292027 - 4291611 - | hypothetical protein aphA 4293091 - 4292138 - | acid phosphatase/phosphotransferase TERM 5428 4292577 - 4292592 + g 86 -4 -5.40072 | TTCAGATAATCTTCG CTTTCT GGCG AGAAGG TTTTTTTGCCGCGCC TERM 5429 4293927 - 4293950 + r 100 -14.6 -3.79668 | CAGTTTAATTTCACT GCAGGCTGGG TAAC TCCAGCCTGC TTTCCTGCATTACAT tyrB 4295153 - 4293960 - | aromatic amino acid aminotransferase TERM 5430 4294982 - 4294961 - G 72 -6.5 -4.42806 | gap 1 CCATCGGTAAATAAA GCGAAGCGCC ATG GG-GCTGCGC ATTCAGGCGCGCTTC alr 4296485 - 4295406 - | alanine racemase dnaB 4297845 - 4296538 - | replicative DNA helicase; part of primosome TERM 5431 4296605 - 4296630 + g 74 -8.9 -3.9281 | CCGTTAAAGGTCAGG CGTACCGTCCC GATT GGGCCGTTACG TTGTTTACCGATAAT TERM 5432 4297281 - 4297301 + g 100 -6.7 -5.80364 | opp_overlap 4297280 4297281 CGACGATGATCAAAT CCGACGGCT GCA AGCCAGCGG TTTTTTTGTTGAGAT TERM 5433 4297601 - 4297618 + g 77 -3.3 -5.02476 | overlap 4297603 GCATAAGCACTGATG TTCGCCG CACT TGGCGTA TTTTTTGACAGCTCT TERM 5434 4298577 - 4298567 - g 88 -8.2 -4.59853 | overlap 4298556 4298568 GGAACCGCGCAAAAA GCGC AGA GCGC GCTAAAAGCCGGCGC qor 4298036 - 4299019 + | quinone oxidoreductase, NADPH-dependent TERM 5435 4299050 - 4299026 - T 100 -10 -4.77775 | opp_overlap 4299028, overlap 4299028 ATTCCATAAAAGAAA TAGGGCTTCC ACCTG GGAAGCCCTT TCTTTTTATAGTTCG TERM 5436 4299028 - 4299048 + T 100 -12.6 -5.00267 | opp_overlap 4299026 4299028 TCCATAAAAGAAATA GGGCTTCC ACCTG GGAAGCCC TTTCTTTTTATAGTT TERM 5437 4299048 - 4299028 - T 95 -12.6 -3.99938 | opp_overlap 4299028, overlap 4299026 TCCATAAAAGAAATA GGGCTTCC ACCTG GGAAGCCC TTTCTTTTTATAGTT pspG 4299637 - 4299185 - | phage shock protein G TERM 5438 4299530 - 4299507 - GT 100 -13.1 -4.43681 | opp_overlap 4299504 4299501 GATTTAACAGCAAAA CGCCCCGCG ACGGTG CGCAGGGCG TGGTGAATTTGACTA yjbN 4300604 - 4299561 - | tRNA-dihydrouridine synthase A TERM 5439 4300742 - 4300728 - R 85 -7.2 -5.09259 | CATTGCAAAAGAAAA TTGAGA TCC TCTCAA GGCATGAAGCTCTCA TERM 5440 4300919 - 4300898 - R 100 -9.5 -5.4251 | opp_overlap 4300898 4300901 TTGATAGAGAAAAAA GAACCCAAT AAAT ATTGGGTCC TTTTATATAATGCCT TERM 5441 4300898 - 4300919 + r 80 -7.3 -4.57755 | opp_overlap 4300898, overlap 4300901 TTGATAGAGAAAAAA GAACCCAAT AAAT ATTGGGTCC TTTTATATAATGCCT yjbM 4301701 - 4300961 - | hypothetical protein yjbL 4301946 - 4301692 - | hypothetical protein TERM 5442 4302382 - 4302394 + G 71 -9.1 -3.49858 | TGAGTCTGCAGGATG GCGCT ATC AGCGC TTATGATCTGCTTGA yjbK 4302204 - 4302779 + | zinc uptake transcriptional repressor yjbJ 4303030 - 4302821 - | putative stress-response protein TERM 5443 4303054 - 4303073 + r 73 -4.3 -4.77567 | opp_overlap 4303067 CCTCATCGTTAGGTT GTGAATG AGAGTA CGTTCAC TTTTCTTCTGAACGT dinF 4304525 - 4303146 - | DNA-damage-inducible SOS response protein TERM 5444 4304530 - 4304507 - G 100 -16 -4.94262 | GAGATGAAAAACAAA CCGCGACGCC AGGC GGCATCGCGG TCTCAGAGATATGTT lexA 4305152 - 4304544 - | LexA repressor dgkA 4305630 - 4305262 - | diacylglycerol kinase plsB 4305801 - 4308224 + | glycerol-3-phosphate acyltransferase TERM 5445 4308325 - 4308293 - T 72 -6.2 -4.29326 | TGCAAATTCAATAAA TTGCGATTCACCGG GTAGG CCTGAGAAGCGCAA CGCATCAGGCAACCC TERM 5446 4308366 - 4308349 - T 91 -11.3 -4.35604 | opp_overlap 4308349 GCAACCCAGAAGAAA GCCGGAT GATC ATCCGGC TTTTTTACATCATCA TERM 5447 4308349 - 4308366 + T 100 -11.3 -5.1101 | opp_overlap 4308349 GCAACCCAGAAGAAA GCCGGAT GATC ATCCGGC TTTTTTACATCATCA ubiA 4309251 - 4308379 - | 4-hydroxybenzoate octaprenyltransferase ubiC 4309872 - 4309264 - | chorismate pyruvate lyase insB 4310422 - 4309919 - | IS1 ORF2 SFV_4176 4310497 - 4310691 + | putative IS1 encoded protein TERM 5448 4310772 - 4310753 - T 100 -11.4 -5.71983 | opp_overlap 4310752 4310751 GGAAGCATAAAAAAA GGTGCGCC AGGA GACGCACC AGTTGTTGCAAAATC malM 4311725 - 4310805 - | maltose regulon periplasmic protein TERM 5449 4311793 - 4311806 + r 75 -9.5 -3.62096 | opp_overlap 4311793 4311788 AACCCGATAATCAGA GGGGC TTTC GCCCC TTTCAGATAATGACA TERM 5450 4311806 - 4311793 - R 70 -9.5 -2.97017 | opp_overlap 4311793, overlap 4311788 AACCCGATAATCAGA GGGGC TTTC GCCCC TTTCAGATAATGACA TERM 5451 4311829 - 4311868 + r 77 -7 -4.4261 | overlap 4311826 4311830 4311831 4311843 TAATGACAACCTGTT TTTATGCCGGATGCGGCG TAAA CGCCTTATCCGGCCCAGG TTTTGCTATTACCAC lamB 4313217 - 4311877 - | maltoporin malK 4314404 - 4313289 - | maltose/maltodextrin transporter ATP-binding protein TERM 5452 4313733 - 4313709 - G 72 -7.9 -3.97368 | gap 1 TGGCGAACCGATAAA TCCGGC-GAC AAAACG GTCTGCCGGA TAGTGGTACAGTTCC TERM 5453 4313967 - 4313943 - G 75 -4.4 -4.7497 | gap 2 TTCATCGAGCAAAAA TACGCT--TGGC TCG GCCACCAGCGTA CGGCCAATCGCCACG malE 4314769 - 4315959 + | maltose ABC transporter periplasmic protein malF 4316021 - 4317565 + | maltose transporter membrane protein malG 4317580 - 4318470 + | maltose transporter permease TERM 5454 4318541 - 4318558 + T 100 -12.7 -5.99154 | TTGTGACTATTATTC GGCGCTC CACG GAGCGCC TTTTTTTCTTTCGTC TERM 5455 4319372 - 4319390 + T 89 -9 -4.65747 | opp_overlap 4319372 TTTCGGGCAATAAAA TAGTTTAC TGC GTAAACTA TTTTATTGCCCGTTC TERM 5456 4319390 - 4319372 - T 89 -9 -4.63218 | opp_overlap 4319372 TTTCGGGCAATAAAA TAGTTTAC TGC GTAAACTA TTTTATTGCCCGTTC TERM 5457 4319773 - 4319759 - T 73 -7.8 -4.11484 | opp_overlap 4319771, overlap 4319760 CGGAAGTGTTCAAAA CGCTGG GGG CCAGCA CGGATATCGCGCTGT TERM 5458 4320327 - 4320358 + T 82 -7.2 -4.73388 | overlap 4320329 GCTGTAATCTTCCTG TCCAGCACGCCG CGCCATTT CGGCGTGCTGTC TTTTTACTCCCGCTT TERM 5459 4320329 - 4320356 + T 100 -14.2 -3.98256 | overlap 4320327 TGTAATCTTCCTGTC CAGCACGCCG CGCCATTT CGGCGTGCTG TCTTTTTACTCCCGC yjbA 4320772 - 4320362 - | phosphate-starvation-inducible protein PsiE TERM 5460 4320990 - 4320975 - R 78 -5.4 -4.74103 | CCGGTAATTCAAAAA TCACCC ATTC AGGTGA TTCCCAGCCACCAGC yjbH 4323463 - 4321367 - | hypothetical protein yjbG 4324220 - 4323579 - | hypothetical protein yjbF 4324855 - 4324217 - | hypothetical protein TERM 5461 4324900 - 4324879 - R 82 -11.7 -3.32343 | opp_overlap 4324882, overlap 4324882 TCCAGAGGGGCAGAA TAACCACAC CGGA GTGTGGTTA TGGTAAATCCCTTCA TERM 5462 4324882 - 4324897 + r 70 -9 -3.42699 | opp_overlap 4324882 4324879 AGAGGGGCAGAATAA CCACAC CGGA GTGTGG TTATGGTAAATCCCT TERM 5463 4324897 - 4324882 - R 76 -9 -3.80174 | opp_overlap 4324882, overlap 4324879 AGAGGGGCAGAATAA CCACAC CGGA GTGTGG TTATGGTAAATCCCT TERM 5464 4325524 - 4325548 + r 100 -14.4 -4.7153 | opp_overlap 4325524 ATTTATCTGATAAAA CAATGCCGAC TTATT GTCGGCATTG TTTTTAAGGTTATTT TERM 5465 4325548 - 4325524 - R 100 -14.4 -4.40358 | opp_overlap 4325524 ATTTATCTGATAAAA CAATGCCGAC TTATT GTCGGCATTG TTTTTAAGGTTATTT pgi 4327322 - 4325673 - | glucose-6-phosphate isomerase TERM 5466 4327246 - 4327213 - G 100 -14.8 -4.93318 | gap 1, opp_overlap 4327209 4327207 GAGAACTTAGAAAAA CGATCGCCG-TCTTT AGCAA AAAGATCGGCGATCG TAACGTCTTTCATTT TERM 5467 4328431 - 4328417 - g 70 -4.2 -4.68908 | overlap 4328418 4328427 GGTAGCGAAAATAAA GGTCGT ACA ACGACG CTTGGCCGTGGAGGC TERM 5468 4328815 - 4328828 + G 70 -6.7 -4.12188 | GCTGCATTCTCGCGG CTTCC TCGC GGAAG TTTTCGGCATCCTCG lysC 4327847 - 4329196 + | aspartate kinase III SFV_4190 4330963 - 4329362 - | ISSfl4 ORF3 TERM 5469 4330710 - 4330727 + g 82 -9.1 -4.19238 | overlap 4330698 TCTTCCAGAAGATTT CTGGCTG TGTT CAGCCGG TTTTCCAGTTCCGAC TERM 5470 4330732 - 4330769 + g 70 -6.2 -4.1585 | overlap 4330733 4330737 TGTTCAGCCGGTTTT CCAGTTCCGACAGTCG TTTTTC TGCCTGTCGGATCTGA TTTTCAAGCTTATGA SFV_4191 4331330 - 4330983 - | ISSfl4 ORF2 SFV_4192 4332001 - 4331327 - | ISSfl4 ORF1 TERM 5471 4331665 - 4331653 - G 73 -9.1 -3.62046 | opp_overlap 4331645 CGATCCGGGCAACAA CAGCC CCA GGCTG TAATGCCTGCTTAGC TERM 5472 4332005 - 4332032 + H 75 -9.9 -3.61398 | CTGGGAATTCATCGT TCGTGTCCATC AATATA GATGGGCGCGA TTGTTGCCAGACAGG SFV_4193 4332161 - 4332526 + | insertion sequence 2 OrfA protein SFV_4194 4332484 - 4333389 + | insertion element IS2 transposase InsD TERM 5473 4333508 - 4333485 - T 86 -11.1 -3.73224 | opp_overlap 4333488 GCAGTTGTTATTAAA GGATACCCT TTTACG AGGGTATCC CTTCAGACTGATAAC yjiI 4334223 - 4333588 - | RNA 2'-phosphotransferase-like protein TERM 5474 4334419 - 4334408 - H 95 -3 -5.90231 | opp_overlap 4334408 ACAAACACAAAAAAA CAAT GGGG ATTG TTATGACACAACAAG yjiH 4334422 - 4335105 + | hypothetical protein TERM 5475 4335150 - 4335125 - g 70 -4.7 -4.57569 | opp_overlap 4335143 4335146 4335147 TCAGGTCCGCAAAAA CGTCATGGATA TGTT TATCGATGGCG CGCGCCGTGGCTTTA yjiG 4335102 - 4335563 + | hypothetical protein TERM 5476 4335742 - 4335763 + G 75 -5.1 -4.71426 | gap 1, overlap 4335743 4335743 CGGTTGTCGATCTCA GC-GGGCAGA TCC TCTGCCCAGG TTTTATTGATCAACA iadA 4335576 - 4336748 + | isoaspartyl dipeptidase yjiE 4336813 - 4337724 + | putative DNA-binding transcriptional regulator yjiD 4338106 - 4337717 - | hypothetical protein TERM 5477 4338500 - 4338486 - H 72 -5.8 -4.40333 | TGTAAATAATATAAA TTGATA ACA TATCAA ATACATCAAAAATAC yjiC 4338782 - 4339612 + | hypothetical protein TERM 5478 4339715 - 4339739 + T 74 -8.6 -3.8512 | opp_overlap 4339689 4339688 4339686 4339682 4339715 TCTTAATTTAAGAAA GCGCAAGG AACGTTTAC CCTTGCGC TTATTATAATAAGTC TERM 5479 4339739 - 4339715 - T 83 -9.3 -4.2528 | opp_overlap 4339715, overlap 4339689 4339688 4339686 4339682 TCTTAATTTAAGAAA GCGCAAGGA ACGTTTA CCCTTGCGC TTATTATAATAAGTC uxuR 4340478 - 4339753 - | DNA-binding transcriptional repressor UxuR TERM 5480 4340716 - 4340685 - R 100 -12.5 -4.94243 | GCAAAAAAACGAAAA CTGGTCAACCAAA TATCAG TTTGATTGACCAG TAAGTCTGTAGGGTA uxuB 4342201 - 4340741 - | D-mannonate oxidoreductase TERM 5481 4341935 - 4341949 + g 72 -4.9 -4.62336 | GATAATTTTCAGCTC GGTGC TTTCT GCGCC TTTTTCCGCTACGGT TERM 5482 4341968 - 4341979 + g 86 -5.8 -5.15117 | TTCCGCTACGGTGTA CAGC AGTT GCTG TTTTTTCAGGTTTTC TERM 5483 4342275 - 4342251 - R 100 -15 -3.58329 | opp_overlap 4342247, overlap 4342247 GCAAGGAAGAAGGAA CCGGCACGGC GCGCA GCCATGCCGG TGGGTATTAACGGCT uxuA 4343466 - 4342282 - | mannonate dehydratase TERM 5484 4342407 - 4342437 + g 70 -6.9 -4.0098 | gap 1 CGTCCAGCATCTGAT GACCGTGGTCCGGA CGCA TCGGGATCA-GGTC TTCTTTGCCTTCCGC gntP 4343806 - 4345149 + | fructuronate transporter TERM 5485 4345186 - 4345155 - T 95 -11.6 -4.19746 | gap 1, overlap 4345157 4345160 GGTAGCGTAAAAGAA CA-CCAGAGCCTGCC AAT GGCAGGCTCAGACTG ATGACTAAAGTCTAA TERM 5486 4345183 - 4345157 - T 100 -14.4 -3.69506 | overlap 4345155 4345160 TAGCGTAAAAGAACA CCAGAGCCTGCC AAT GGCAGGCTCAGA CTGATGACTAAAGTC TERM 5487 4345180 - 4345160 - T 100 -16.9 -2.94356 | overlap 4345157 4345155 CGTAAAAGAACACCA GAGCCTGCC AAT GGCAGGCTC AGACTGATGACTAAA fimH 4346302 - 4345400 - | FimH protein precursor TERM 5488 4346196 - 4346226 + g 70 -6.9 -4.07885 | gap 1, opp_overlap 4346184 4346182 ACATTAGCGCTGCCA CCGCCAATAGGGAT AGCG GTACC-ATTGGCGG TTTTACAGGCGAATG fimG 4346825 - 4346322 - | minor fimbrial subunit, precursor polypeptide fimF 4347368 - 4346838 - | minor fimbrial subunit, precursor polypeptide TERM 5489 4347305 - 4347276 - G 82 -12.9 -2.87931 | GTTATCTCTGACATA GCCGCGGATAGTA ATCG TGCTATCCGCAGC CAAAACGCGACTTAC fimD 4350014 - 4347378 - | Outer membrane usher protein fimD precursor TERM 5490 4348045 - 4348057 + g 81 -10.5 -3.56643 | TTACCATCGCCTCCC CCGGC ATA GCCGG TTTGCACGCTATAAC fimC 4350737 - 4350081 - | periplasmic chaperone TERM 5491 4350495 - 4350515 + g 88 -2.6 -5.54192 | opp_overlap 4350497, overlap 4350497 GTTATTTGTTGCATC AAGAATAC GTAAG GTATTCTC TTTTTTTCCCTTCAT TERM 5492 4350497 - 4350513 + g 70 -5.2 -4.40173 | opp_overlap 4350497, overlap 4350495 TATTTGTTGCATCAA GAATAC GTAAG GTATTC TCTTTTTTTCCCTTC TERM 5493 4350638 - 4350650 + g 77 -6.3 -4.62069 | CATTATTTGTCACGG CAAGT TGC ACTTG TTTTTGCCCTGCCGG insB 4351653 - 4352156 + | IS1 ORF2 fimA 4352772 - 4352224 - | major type 1 subunit fimbrin (pilin) fimE 4353807 - 4353253 - | tyrosine recombinase TERM 5494 4353964 - 4353935 - R 91 -8 -5.10064 | CCCAATAGATAAAAA GATAACCACACA CGAAGT TATGTGGCTATC AGTCAATTACATTAA TERM 5495 4354014 - 4353999 - R 83 -4 -5.38839 | opp_overlap 4354006, overlap 4354001 CATACAAAAATAAAA TATCAC TGAT GTGACA ACATCTATTTTCATT TERM 5496 4354347 - 4354335 - R 72 -5.5 -4.3898 | opp_overlap 4354340, overlap 4354340 ACTATCTCTATAAAA CAGCA TGA CGCTG TCGTCCTCTGGCTCT fimB 4354929 - 4354444 - | recombinase; regulator for fimA TERM 5497 4354635 - 4354609 - G 81 -5.8 -4.85599 | CTTACGTGATAAAAA TACCCACTCGCT CTC AGCATGCGGATA AGAAGTACGGATACT TERM 5498 4354965 - 4354988 + H 76 -4.6 -4.94902 | overlap 4354955 GACGCGCACTAGCTG TGCTGGGTTA GCAA TAATCCAACA TTTTTATCCTGATTA TERM 5499 4355742 - 4355752 + H 78 -5.4 -4.7923 | overlap 4355747 ACTCTCACTGAGTTA GCTT GCA AAGC TTTCTTTGTTTAGAT TERM 5500 4355757 - 4355777 + H 85 -6.3 -5.24531 | opp_overlap 4355774, overlap 4355747 GCTTGCAAAGCTTTC TTTGTTTAG ATT CTAAATAAA TTTTTTATAAAACAT yjhA 4356383 - 4357099 + | hypothetical protein TERM 5501 4357996 - 4357982 - gf 70 -5 -4.4648 | AGGTTCACGAGAAAA TTACCA GAA CGGTAA GAACTATGCGCATGA yjhT 4357011 - 4358225 + | hypothetical protein TERM 5502 4358233 - 4358252 + F 76 -12.1 -2.69246 | opp_overlap 4358227 4358226, overlap 4358229 4358226 AAAACTAACGCTTCA GGGCCCC GGTAAA GGGGCCC TGCTATCAATTTGTC yjhS 4358290 - 4359270 + | hypothetical protein insB 4360242 - 4359739 - | IS1 ORF2 SFV_4220 4360317 - 4360583 + | putative IS1 encoded protein TERM 5503 4360685 - 4360674 - g 74 -3 -5.02074 | TGACGTTCCAAAAAA TCAT CGTG ATGA CTTACCTATTGCAAT SFV_4221 4360621 - 4361226 + | DeoR family transcriptional regulator SFV_4222 4361443 - 4361327 - | hypothetical protein TERM 5504 4361359 - 4361370 + g 72 -5.8 -4.3898 | CATCCTTGACCAGTA GCCA GATA TGGC TTTTGTCGCAGTCCT SFV_4223 4361702 - 4361980 + | ISEhe3 orfA SFV_4225 4362419 - 4362117 - | putative IS1 encoded protein SFV_4224 4362049 - 4362249 + | IS600 ORF1 insB 4362494 - 4362997 + | IS1 ORF2 SFV_4227 4364531 - 4363338 - | putative P4-type integrase TERM 5505 4364064 - 4364041 - G 86 -12.4 -3.53444 | GTACGCTGCTGTAAA CGGGCGGC AACTTCGA GCCGCCCG GATGACTCGACTGCT TERM 5506 4364715 - 4364700 - H 100 -9 -5.64274 | opp_overlap 4364700 4364698 TTAGGCACAAAAAAA GACGTC CGTT GACGTC TATTGATGTTCCGAT yjgB 4365010 - 4366029 + | putative oxidoreductase TERM 5507 4366035 - 4366058 + F 74 -10.2 -3.21872 | CGACTTCTGATCCCT TTGCCGGGTG CTGT CGCCCGGCAC TTAAATCTCTTTGGA TERM 5508 4367117 - 4367131 + G 70 -7 -4.07568 | overlap 4367109 CGGTAATCGTGTTCA GCACGC TTT GCGGGC TTTTACGCCAAAAGA yjgR 4366158 - 4367660 + | hypothetical protein TERM 5509 4367755 - 4367770 + T 83 -10.4 -3.73336 | opp_overlap 4367755 GTCAACAATAATAAA GGGAGC TTTC GCTCCC TTGTTAGATTACGAT TERM 5510 4367770 - 4367755 - T 93 -10.4 -4.57882 | opp_overlap 4367755 GTCAACAATAATAAA GGGAGC TTTC GCTCCC TTGTTAGATTACGAT yjgQ 4368861 - 4367779 - | hypothetical protein yjgP 4369898 - 4368861 - | hypothetical protein TERM 5511 4369071 - 4369040 - G 75 -4.4 -4.73613 | gap 1, overlap 4369043 GGATCAGGAAGAAAA GTAGATACAG-CAGC ATG GCTGGCAGCATCGAC AGTACGCGTCCCTGA TERM 5512 4369090 - 4369076 - G 73 -11.4 -2.65264 | GCAGCATCGACAGTA CGCGTC CCT GACGCG GGTTAACCACGCTCA TERM 5513 4371690 - 4371665 - g 70 -4.5 -4.54727 | opp_overlap 4371667, overlap 4371666 4371667 TCTGGTAAAGCAAAA GGCGCAACCGG TCGT CCGGTAGCGTT GCTGGCACAGTTCCT TERM 5514 4371667 - 4371688 + G 77 -11.5 -3.14881 | opp_overlap 4371666 4371665 4371667 TGGTAAAGCAAAAGG CGCAACCGG TCGT CCGGTAGCG TTGCTGGCACAGTTC TERM 5515 4371688 - 4371667 - g 73 -11.5 -2.5893 | opp_overlap 4371667, overlap 4371666 4371665 TGGTAAAGCAAAAGG CGCAACCGG TCGT CCGGTAGCG TTGCTGGCACAGTTC pepA 4370228 - 4371739 + | leucyl aminopeptidase TERM 5516 4372152 - 4372134 - g 70 -4.5 -4.56597 | gap 1, opp_overlap 4372134 GCCTGGCCGCAAAAA CGCAGCAG CAGC CCGC-GCG ATATATTGATTAGTC holC 4371873 - 4372316 + | DNA polymerase III subunit chi TERM 5517 4372547 - 4372531 - g 72 -4.3 -4.62783 | overlap 4372534 CATGCAGGGCAAAAA CACCCTG TGG CAGGTCG GTACTGACCACGCCG TERM 5518 4373811 - 4373791 - g 74 -7.5 -4.07568 | overlap 4373793 TGGCTGGCCGGAAAA TACCGACGC CCT GCGTCAGTT CCACCCAACCAGCGT TERM 5519 4373809 - 4373793 - g 77 -10.1 -3.63744 | overlap 4373791 GCTGGCCGGAAAATA CCGACGC CCT GCGTCAG TTCCACCCAACCAGC valS 4372316 - 4375171 + | valyl-tRNA synthetase TERM 5520 4375217 - 4375190 - T 87 -9.8 -4.3014 | opp_overlap 4375194, overlap 4375194 ACACAGTGATGAAAA CGAAGGCCGGAG CATG CTCCGGCCTTTT TTATCTCTTACAGAA TERM 5521 4375213 - 4375194 - T 100 -15 -3.72073 | opp_overlap 4375194, overlap 4375190 AGTGATGAAAACGAA GGCCGGAG CATG CTCCGGCC TTTTTTATCTCTTAC TERM 5522 4375194 - 4375213 + T 100 -15 -5.47431 | opp_overlap 4375194 4375190 AGTGATGAAAACGAA GGCCGGAG CATG CTCCGGCC TTTTTTATCTCTTAC yjgN 4376421 - 4375225 - | hypothetical protein TERM 5523 4375267 - 4375278 + g 70 -5.8 -4.17263 | opp_overlap 4375266 TCCCCGAGAAATACT GGCT AAGA AGCC TTTATCTGGTTGTTC TERM 5524 4376403 - 4376381 - G 79 -2.6 -5.3104 | opp_overlap 4376384 4376386, overlap 4376386 CCATGAAAAACAAAA GAATGGGACG GAA CATCCATTTC ATTAATAACTTGAGC SFV_4237 4376614 - 4377117 + | hypothetical protein TERM 5525 4377148 - 4377123 - T 100 -9 -5.47399 | opp_overlap 4377123 CGAACTCTAAAAAAA TGCCCGCTAG TATGTG CTATCGGGCA TTTTAATCAATTAAT TERM 5526 4377123 - 4377148 + T 87 -9.7 -4.31379 | opp_overlap 4377123 CGAACTCTAAAAAAA TGCCCGCTAGT ATGT GCTATCGGGCA TTTTAATCAATTAAT yjgD 4377579 - 4377163 - | hypothetical protein argI 4377741 - 4378754 + | ornithine carbamoyltransferase subunit I SFV_4240 4378945 - 4378760 - | putative IS1 encoded protein insB 4379020 - 4379523 + | IS1 ORF2 SFV_4242 4380262 - 4379534 - | hypothetical protein TERM 5527 4380378 - 4380347 - R 71 -7.4 -3.85698 | overlap 4380348 CGCTCTTTTCACAAA CTCGCCGTAAAC CTGGAGTT ATTTACGGCGAA AAGTCATCACGCCAT yjgK 4380837 - 4380385 - | hypothetical protein yjgJ 4381575 - 4380982 - | hypothetical protein yjgI 4381646 - 4382359 + | oxidoreductase TERM 5528 4382379 - 4382404 + F 91 -8.3 -4.93877 | opp_overlap 4382379 4382378 CTACGCTCAATTAAG CCCAGCCATTA TCCA TGATGTCTGGG TTTTGTTTACTAACG yjgH 4382407 - 4382886 + | hypothetical protein TERM 5529 4382998 - 4382984 - f 95 -2.8 -5.95286 | ATGAAAAAGAAAAAA GCAG GAAATGT CTGC AATTATTGATACCGA TERM 5530 4383256 - 4383273 + F 100 -12.7 -5.81412 | GATCACCCATTCCCA GCCCCTC AATC GAGGGGC TTTTTTTTGCCTAGG TERM 5531 4383570 - 4383560 - g 71 -2.4 -5.02074 | TCACTGGGTAAAAAA GGCG AAA CGCT GGCCGATACCATTTC pyrB 4383305 - 4384240 + | aspartate carbamoyltransferase catalytic subunit pyrI 4384253 - 4384714 + | aspartate carbamoyltransferase regulatory subunit TERM 5532 4384733 - 4384758 + F 93 -10.5 -4.61231 | opp_overlap 4384733 CGGTTGGTAATAAAA GTCTGGCTC CCTATAAT GAGCCAGAC TTTTTACCGCTGTAA TERM 5533 4384758 - 4384733 - f 93 -10.5 -4.63218 | opp_overlap 4384733 CGGTTGGTAATAAAA GTCTGGCTC CCTATAAT GAGCCAGAC TTTTTACCGCTGTAA yjgF 4384787 - 4385173 + | hypothetical protein TERM 5534 4385186 - 4385205 + T 74 -10.7 -3.14468 | opp_overlap 4385186 TAATCTTGATGGAAA TCCGGGC TATCAT GCCCGGA TTAAGTCTGATGACA TERM 5535 4385205 - 4385186 - T 83 -10.7 -3.65827 | opp_overlap 4385186 TAATCTTGATGGAAA TCCGGGC TATCAT GCCCGGA TTAAGTCTGATGACA mgtA 4388075 - 4385379 - | magnesium-transporting ATPase MgtA TERM 5536 4387742 - 4387726 - G 70 -5.1 -4.41348 | CCTGCGGCAAATAAA TCTTCCG TGG CGTAAGA AATAGCACCAAGAAT treR 4388454 - 4389401 + | trehalose repressor TERM 5537 4389441 - 4389454 + F 91 -8.1 -4.92239 | ATCTTCGCTGCGTTT CGGGA ACGT TCCCG TTTTTAAATTTTTCC TERM 5538 4390081 - 4390067 - f 85 -5.6 -5.41143 | opp_overlap 4390067 4390068 4390078 4390079, overlap 4390069 CAGCGGTGAAAAAAA TGGGCG GCA CGCCGA TCCTTGGTATCGTGC TERM 5539 4391932 - 4391944 + G 72 -7.7 -3.87104 | opp_overlap 4391929 AGGAATGCACAACGT GGCAT GGA ATGCC TTGTTCTGGTGTAAC TERM 5540 4392535 - 4392521 - g 75 -11.4 -3.1247 | AGCCGTGAGATCCAA CCCTGG CAG CCAGGG CAAATGCGCGGCAAC treC 4390844 - 4392646 + | trehalose-6-phosphate hydrolase TERM 5541 4392827 - 4392817 - f 74 -5.4 -4.57275 | overlap 4392820 CAAAAAAAGTTAAAA CATC CTT GATG CAAAGCACTATATAT TERM 5542 4393349 - 4393322 - g 77 -6.2 -4.67234 | gap 1, opp_overlap 4393321 4393324, overlap 4393324 ATTGAACGTGAAAAA CGCGG-TCGCCTG AAC CAGGAGATCCGTG GTCTGGTCGAGCAGA nrdD 4393040 - 4395178 + | anaerobic ribonucleoside triphosphate reductase TERM 5543 4395232 - 4395201 - f 80 -10 -3.90112 | opp_overlap 4395197 4395201 4395211, overlap 4395202 4395219 TCTGCGCTAAGCAAA TGCCGGATGCGGCG TAAA CGCCTTATCCGGCC TACATTTGGCAACGG TERM 5544 4395201 - 4395232 + F 78 -12.2 -2.64155 | opp_overlap 4395201 4395202 4395219, overlap 4395197 4395211 TCTGCGCTAAGCAAA TGCCGGATGCGGCG TAAA CGCCTTATCCGGCC TACATTTGGCAACGG TERM 5545 4395231 - 4395202 - f 82 -13.5 -2.93853 | opp_overlap 4395201 4395197 4395211, overlap 4395201 4395219 CTGCGCTAAGCAAAT GCCGGATGCGGCG TAAA CGCCTTATCCGGC CTACATTTGGCAACG TERM 5546 4395266 - 4395219 - f 88 -12.2 -3.53811 | opp_overlap 4395211 4395201 4395197 4395253 4395254, overlap 4395202 4395201 4395263 CGGATGCGGCGTAAA CGCCTTATCCGGCCTACA TTTGGCAACGGC TGTAGGCCTGATAAGACG CGACAGCGTCGCATC TERM 5547 4395253 - 4395286 + F 73 -9.5 -3.34344 | opp_overlap 4395219 4395263, overlap 4395254 TTGGCAACGGCTGTA GGCCTGATAAGACGC GACA GCGTCGCATCAGGCA TTGATTACCGGATGC TERM 5548 4395254 - 4395285 + F 81 -13 -2.60392 | opp_overlap 4395219 4395263, overlap 4395253 TGGCAACGGCTGTAG GCCTGATAAGACGC GACA GCGTCGCATCAGGC ATTGATTACCGGATG TERM 5549 4395281 - 4395263 - f 79 -11 -3.30124 | opp_overlap 4395254 4395253, overlap 4395219 CTGTAGGCCTGATAA GACGCGAC AGC GTCGCATC AGGCATTGATTACCG nrdG 4395336 - 4395800 + | anaerobic ribonucleotide reductase-activating protein TERM 5550 4395837 - 4395804 - T 93 -14.7 -3.4072 | overlap 4395805 CATTTGCGATGATAA GTTCCCTGTTACCTG AGTG CAGGCAACAGGGAAA TGAGGAATTAACGAT TERM 5551 4395836 - 4395805 - T 100 -18.2 -2.64218 | overlap 4395804 ATTTGCGATGATAAG TTCCCTGTTACCTG AGTG CAGGCAACAGGGAA ATGAGGAATTAACGA cybC 4396231 - 4395845 - | cytochrome b(562) TERM 5552 4396388 - 4396409 + r 73 -2.1 -5.14563 | overlap 4396389 GTAATTTTTTAGTTT ATAGCGCGG CAGG TCGCGCCAG TTTTTTACTGCCCGG pmbA 4397685 - 4396414 - | peptidase PmbA yjgA 4397860 - 4398411 + | hypothetical protein TERM 5553 4398434 - 4398473 + T 79 -12.8 -2.88544 | overlap 4398437 4398448 TGTTGATGTGAGTAT GGTTTGCCGGATGCGGCG TAAA CGCCTTATCCGGCAATGC TATATCAGGCTGAAG TERM 5554 4398437 - 4398470 + T 100 -17.5 -2.69468 | overlap 4398434 4398448 TGATGTGAGTATGGT TTGCCGGATGCGGCG TAAA CGCCTTATCCGGCAA TGCTATATCAGGCTG yjfG 4399816 - 4398494 - | putative ligase TERM 5555 4400098 - 4400075 - g 81 -9.6 -4.09864 | ATTTATTGTCGAAAA GCAGCACGAG TTTT CTCATGCTAC CGGTGAGCTCACTGC TERM 5556 4400845 - 4400859 + G 74 -8.6 -3.91897 | CCAGCCACCCGGACG GCAAAC TGC GTTTGC TTTATGAGTGCAACC fbp 4400043 - 4401041 + | fructose-1,6-bisphosphatase TERM 5557 4401068 - 4401097 + T 89 -9.3 -4.59109 | opp_overlap 4401069 4401070, overlap 4401070 TCTCCACACGGAGTA ATGCCAGTCAGTT AAGC AACTGACTGGCTC TTTTTCGGGGCTGTG TERM 5558 4401096 - 4401069 - T 81 -12.8 -3.20382 | opp_overlap 4401068 4401070, overlap 4401070 CTCCACACGGAGTAA TGCCAGTCAGTT AAGC AACTGACTGGCT CTTTTTCGGGGCTGT TERM 5559 4401095 - 4401070 - T 90 -16.3 -2.52015 | opp_overlap 4401070 4401068, overlap 4401069 TCCACACGGAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG TERM 5560 4401070 - 4401095 + T 100 -16.3 -3.90762 | opp_overlap 4401069 4401070, overlap 4401068 TCCACACGGAGTAAT GCCAGTCAGTT AAGC AACTGACTGGC TCTTTTTCGGGGCTG SFV_4260 4402425 - 4401079 - | IS4 orf TERM 5561 4402415 - 4402440 + g 73 -9.1 -3.61398 | opp_overlap 4402415 ATGTGCATAAAAAAA TCCGGAAAC AAGTGAGC GTTTCCGGA TTCTTACACAGCCAC TERM 5562 4402440 - 4402415 - G 100 -9.8 -5.61596 | opp_overlap 4402415 ATGTGCATAAAAAAA TCCGGAAACA AGTGAG CGTTTCCGGA TTCTTACACAGCCAC yjfF 4403507 - 4402635 - | inner membrane ABC transporter permease protein YjfF TERM 5563 4403213 - 4403199 - G 72 -7.8 -3.90328 | overlap 4403212 CAGAAGCCCCATAAA TGCGCC GAA GGCACA GCCCATCACCAGCAC TERM 5564 4403490 - 4403466 - G 72 -7.8 -3.97388 | overlap 4403468 ATAGCTCAGCACAAA GACGCCGATG GTGAT CATCAGCGGC AAGTTACGTTTTATC TERM 5565 4403488 - 4403468 - G 73 -9 -3.57674 | overlap 4403466 AGCTCAGCACAAAGA CGCCGATG GTGAT CATCAGCG GCAAGTTACGTTTTA ytfT 4404516 - 4403494 - | putative transport system permease protein TERM 5566 4404007 - 4403995 - G 76 -9.1 -3.71848 | CGTTGGCAGGAACAA CAGCG ATC CGCTG CCAAACCATGAGAGA TERM 5567 4404488 - 4404476 - G 70 -6.2 -4.18018 | opp_overlap 4404476 GTCGGCCAGTGAAAA CGCC TTTTT GGCG GCGTAGTGTCAGGGA ytfR 4406032 - 4404530 - | putative ATP-binding component of a transport system TERM 5568 4405991 - 4406007 + g 72 -8.7 -3.8505 | opp_overlap 4405991, overlap 4406002 GAAAAATTTACTTAA TCCTTCG GTG CGGAGGA TTTCCTGGTGTTGGT TERM 5569 4406312 - 4406302 - H 72 -8.2 -3.65902 | opp_overlap 4406310 TCCAGCGCATCGAAA GCGG GTC CCGC CATGTTCGGCGTCAG TERM 5570 4406940 - 4406956 + H 71 -7.3 -4.12902 | CTGGTTTTCCTGCTT TTGCTGA CCA TCGGCAA TTTTCAACGTAATTC ppa 4407438 - 4407968 + | inorganic pyrophosphatase TERM 5571 4408337 - 4408315 - T 72 -5.5 -4.4195 | gap 1, opp_overlap 4408310 4408315 4408318, overlap 4408318 ATACATCGCATAAAA CAACGCCACC CGAA GGAGGCG-TG CTTTTATTATTACTT TERM 5572 4408315 - 4408338 + T 70 -2.2 -4.95167 | opp_overlap 4408315 4408318, overlap 4408310 4408318 ATACATCGCATAAAA CAACGCCACC CGAA GGAGGCGTGC TTTTATTATTACTTA TERM 5573 4408335 - 4408318 - T 79 -8.3 -4.32067 | opp_overlap 4408315 4408310 4408318, overlap 4408315 CATCGCATAAAACAA CGCCACC CGAA GGAGGCG TGCTTTTATTATTAC ytfP 4408688 - 4408347 - | hypothetical protein TERM 5574 4408611 - 4408625 + g 72 -11.4 -2.52834 | opp_overlap 4408610 4408609, overlap 4408610 4408614 4408623 ATCGATACTGAAATC GCCCAG TAA CTGGGC ATTGGTCATCCAGTG ytfN 4412470 - 4408691 - | hypothetical protein TERM 5575 4408741 - 4408720 - G 70 -10.9 -2.70315 | overlap 4408717 4408716 GATAGAGCAAATCCA GTGCCTGGT CTAC ACCAGACAC GGCTTCCAGATATAG TERM 5576 4410336 - 4410375 + g 79 -2.1 -5.22794 | gap 1, overlap 4410339 4410354 TGCGGCACGCACAGT TCCGCATTCGGGTTAAGC CAGCA GTGTGGCCCG-ATGCTGA TTTTTTGCTCCTTAT TERM 5577 4411860 - 4411871 + g 72 -5.8 -4.43272 | CCGAGCGGCTTTTCC TCCG GCTG CGGA TTTTCAATTTTCGGT ytfM 4414200 - 4412467 - | hypothetical protein TERM 5578 4414275 - 4414262 - H 70 -2.4 -5.06816 | ACGGCTTAACAAAAA TCCA GTAATA TGGA TTAAAAAGCAGACTA msrA 4414406 - 4415044 + | methionine sulfoxide reductase A ytfL 4415367 - 4416710 + | putative transport protein TERM 5579 4416754 - 4416721 - f 71 -7.5 -3.89614 | gap 1, opp_overlap 4416725 4416727, overlap 4416723 4416727 CGTAACCCCCAGAAA CATCA-ACGGCTCCTG AAT CAGGAGCCGTCTTATT ACTGCATAGCACTTT TERM 5580 4416752 - 4416723 - f 75 -10.1 -3.5362 | gap 1, opp_overlap 4416725 4416727, overlap 4416721 4416727 TAACCCCCAGAAACA TCA-ACGGCTCCTG AAT CAGGAGCCGTCTTA TTACTGCATAGCACT TERM 5581 4416725 - 4416749 + F 100 -14.3 -3.73647 | opp_overlap 4416723 4416721 4416727, overlap 4416727 ACCCCCAGAAACATC AACGGCTCCTG AAT CAGGAGCCGTC TTATTACTGCATAGC TERM 5582 4416727 - 4416747 + F 100 -16.9 -3.44998 | opp_overlap 4416723 4416721 4416727, overlap 4416725 CCCCAGAAACATCAA CGGCTCCTG AAT CAGGAGCCG TCTTATTACTGCATA TERM 5583 4416747 - 4416727 - f 100 -16.9 -3.50335 | opp_overlap 4416727 4416725, overlap 4416723 4416721 CCCCAGAAACATCAA CGGCTCCTG AAT CAGGAGCCG TCTTATTACTGCATA ytfJ 4417303 - 4417857 + | hypothetical protein ytfI 4418858 - 4417920 - | hypothetical protein TERM 5584 4418499 - 4418511 + g 72 -6.3 -4.35483 | opp_overlap 4418499, overlap 4418495 TTTGAAATCCATGAA TGAGT TAT ACTCA TTTATTGTAATGGGA TERM 5585 4419067 - 4419025 - R 80 -10.1 -3.86346 | gap 1, opp_overlap 4419024 4419025 4419029 TTAGGTTGGGATAAA TCAGGATGGCAGAATCAG GAAATACA CTGTTTCTGCCATC-TGA ATTTAGTAAATGGAC TERM 5586 4419029 - 4419064 + r 76 -12 -2.68279 | opp_overlap 4419025, overlap 4419025 4419024 GTTGGGATAAATCAG GATGGCAGAATCAG GAAATACA CTGTTTCTGCCATC TGAATTTAGTAAATG cysQ 4419762 - 4419070 - | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase TERM 5587 4419645 - 4419627 - G 74 -8.8 -3.86015 | overlap 4419630 GATCTTCTTCAGAAA GGACCGGA ATA TCCGGTGC CAGCGTACGTAAACC TERM 5588 4421289 - 4421278 - g 70 -3.6 -4.59773 | GTGGAGGTGGAAAAA GGCC AGTT GACC TTCCGTAATGCCGCC cpdB 4420000 - 4421943 + | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 5589 4422000 - 4421972 - Tf 82 -11 -3.6053 | opp_overlap 4421990 4421992 4421999, overlap 4421968 4421973 CGGCCTATAAATCAA CCGCATCCGGCA TTTAT TGGCGGATGCGA TGCTGCCGTATCTTA TERM 5590 4421999 - 4421973 - Tf 79 -12.3 -2.75997 | opp_overlap 4421990 4421992, overlap 4421972 4421968 GGCCTATAAATCAAC CGCATCCGGCA TTTAT TGGCGGATGCG ATGCTGCCGTATCTT ytfH 4422560 - 4422069 - | hypothetical protein TERM 5591 4423253 - 4423235 - gH 72 -6.6 -4.18018 | overlap 4423236 CCGCGGCACTGAAAA GCGTCGGA CTG CCCGACGG ACTGGCGGATATGCT TERM 5592 4423252 - 4423236 - gH 70 -10.1 -3.10597 | overlap 4423235 CGCGGCACTGAAAAG CGTCGGA CTG CCCGACG GACTGGCGGATATGC ytfG 4422538 - 4423398 + | putative oxidoreductase ytfF 4423498 - 4424472 + | putative transmembrane subunit ytfE 4424580 - 4425242 + | cell morphogenesis/cell wall metabolism regulator TERM 5593 4425274 - 4425250 - T 100 -16.5 -4.19817 | opp_overlap 4425271 GTGAGTGATCTAAAA GCTGGATGGCA TTG CGCCATCCAGC ATGATAATGCGGTTA cycA 4426699 - 4425287 - | D-alanine/D-serine/glycine permease fklB 4427628 - 4427008 - | peptidyl-prolyl cis-trans isomerase TERM 5594 4427463 - 4427481 + g 79 -10.2 -3.75153 | opp_overlap 4427466, overlap 4427466 CGCGATGCACCACAT CAACCGGC ACA GCCGGATG TTTGCCTTCCAGCGC TERM 5595 4427478 - 4427466 - G 76 -10.5 -3.29947 | opp_overlap 4427466 4427463 GATGCACCACATCAA CCGGC ACA GCCGG ATGTTTGCCTTCCAG TERM 5596 4428313 - 4428283 - g 74 -7.4 -4.13014 | opp_overlap 4428274, overlap 4428284 4428293 GGCAGATGGTGAAAA TCCGCCAGAACGCC AGC GGCGTGGTGACGGG CTTAACCATTGATAC TERM 5597 4428312 - 4428284 - g 72 -10.9 -3.07487 | opp_overlap 4428274, overlap 4428283 4428293 GCAGATGGTGAAAAT CCGCCAGAACGCC AGC GGCGTGGTGACGG GCTTAACCATTGATA TERM 5598 4428360 - 4428373 + G 70 -3.7 -4.71426 | overlap 4428358 GTCCTGTTTACCCGC CAGCC GGAT GGCAG TTTTATTCGTGCGCG ytfB 4427847 - 4428392 + | hypothetical protein ytfA 4429023 - 4428376 - | hypothetical protein TERM 5599 4429145 - 4429168 + H 74 -3.9 -4.91511 | opp_overlap 4429152, overlap 4429147 GTGATCGCCATCGCA TATCAACCA ACTAGA TGGTTGATC TTTTTATCCTCCAGT SFV_4283 4429235 - 4430026 + | 3-ketoacyl-(acyl-carrier-protein) reductase insB 4431358 - 4430855 - | IS1 ORF2 SFV_4284 4430171 - 4430920 + | hypothetical protein SFV_4286 4431472 - 4432428 + | IS600 ORF2 cadB 4433521 - 4432469 - | transport of lysine/cadaverine SFV_4288 4433815 - 4433561 - | putative IS1 encoded protein insB 4433890 - 4434393 + | IS1 ORF2 TERM 5600 4434743 - 4434724 - T 100 -13.6 -4.98531 | opp_overlap 4434724 TCCTGAAACGAAAAA CGGACCTC CGTG GAGGTCCG TTGATATGAATTTGG TERM 5601 4434724 - 4434743 + T 90 -13.6 -3.31196 | opp_overlap 4434724 TCCTGAAACGAAAAA CGGACCTC CGTG GAGGTCCG TTGATATGAATTTGG TERM 5602 4434789 - 4434805 + T 73 -10.9 -2.62616 | opp_overlap 4434788 4434786 4434783 TCGAACCAAGGACAC GGGGATT TTC AATCCCC TGCTCTACCGACTGA yjdC 4435513 - 4434938 - | putative transcriptional regulator dipZ 4437247 - 4435550 - | thiol:disulfide interchange protein precursor cutA 4437561 - 4437223 - | divalent-cation tolerance protein CutA TERM 5603 4437647 - 4437668 + r 80 -12.9 -2.56164 | opp_overlap 4437648, overlap 4437646 GTCGGCGGGAAAGAA AGCGGGGCG TGAA CGCCCCGCG ATTGATCATTACAGC TERM 5604 4437667 - 4437648 - R 100 -16.4 -4.41348 | opp_overlap 4437647 4437646 TCGGCGGGAAAGAAA GCGGGGCG TGAA CGCCCCGC GATTGATCATTACAG dcuA 4438978 - 4437677 - | anaerobic C4-dicarboxylate transporter TERM 5605 4439069 - 4439050 - R 100 -13.6 -5.55769 | opp_overlap 4439050 GCTCACAAGAAAAAA GGCACGTC ATCT GACGTGCC TTTTTTATTTGTACT TERM 5606 4439050 - 4439069 + r 100 -13.6 -5.73978 | opp_overlap 4439050 GCTCACAAGAAAAAA GGCACGTC ATCT GACGTGCC TTTTTTATTTGTACT aspA 4440532 - 4439096 - | aspartate ammonia-lyase TERM 5607 4439961 - 4439973 + g 74 -7.7 -4.13282 | overlap 4439952 ACTGCGTCCTGCAGC TGGGT ACG ACCCA TTTTCAGGATGTCCT TERM 5608 4440396 - 4440411 + g 71 -2.6 -4.92757 | gap 1, opp_overlap 4440396, overlap 4440391 ATACCGCGAACAAAT TCAG-GA ATA TCACTGA TTTTGTTGTTGCTGA fxsA 4440869 - 4441345 + | FxsA TERM 5609 4441354 - 4441386 + T 78 -4.8 -5.0925 | opp_overlap 4441347 4441354 GGATTAATGTCGAAA CGCCGGATTATG TGGTTATGC CATTTTCCGGCG TTTTTCGTTTTGGCA yjeH 4442617 - 4441361 - | inner membrane protein YjeH TERM 5610 4442491 - 4442479 - G 77 -6.9 -4.56314 | opp_overlap 4442484, overlap 4442480 CTAAGATAATCAAAA CGGGC CAC GCCCA CAGGCTGTTATTGCC TERM 5611 4442582 - 4442596 + g 70 -7.1 -4.10744 | opp_overlap 4442572 TAGCAGGCCAATGCC CTGGG CCAGC CCCAG TTCTTGTTTGAGTCC groES 4442893 - 4443186 + | co-chaperonin GroES TERM 5612 4443606 - 4443596 - g 74 -8.2 -3.91897 | CGTGGTATCGACAAA GCGG TTA CCGC TGCAGTTGAAGAACT groEL 4443230 - 4444876 + | chaperonin GroEL TERM 5613 4444906 - 4444929 + F 100 -12.4 -5.50723 | opp_overlap 4444906 GCAGAAATAAACAAA CCCCCGGGCA GAAA TGTCTGGGGG TTTTTCTTTTGGTCA TERM 5614 4444929 - 4444906 - f 84 -8 -4.83246 | opp_overlap 4444906 GCAGAAATAAACAAA CCCCCGGGCA GAAA TGTCTGGGGG TTTTTCTTTTGGTCA yjeI 4445014 - 4445367 + | hypothetical protein yjeJ 4446439 - 4445570 - | hypothetical protein SFV_4302 4446744 - 4446466 - | putative IS1 encoded protein insB 4446819 - 4447322 + | IS1 ORF2 TERM 5615 4447620 - 4447641 + T 76 -7.9 -4.30978 | ATCAGTTACTGCTGG CGTAGCTGG AGAT CCAGCGGCG TTTTGCTGGGTTCGC yjeK 4448638 - 4447610 - | hypothetical protein efp 4448680 - 4449246 + | elongation factor P TERM 5616 4449251 - 4449282 + F 90 -13 -3.65046 | overlap 4449255 GCGTGAAGTAATGCG GTTGTGGTGCGGCC TGCA GGCTGCACCATCAC TTATTCAGGTCAGAG TERM 5617 4449255 - 4449278 + F 86 -14.6 -2.66106 | overlap 4449251 GAAGTAATGCGGTTG TGGTGCGGCC TGCA GGCTGCACCA TCACTTATTCAGGTC SFV_4306 4449534 - 4449680 + | entericidin B membrane lipoprotein TERM 5618 4449684 - 4449715 + F 91 -8 -5.26316 | opp_overlap 4449688, overlap 4449688 GCGCAGCAATAAGCA ATAACGGTACGACA GCAG TGTCGTGCCGTTTG TTTTTTCTGCGATCG TERM 5619 4449688 - 4449711 + F 100 -13.2 -5.13354 | opp_overlap 4449688, overlap 4449684 AGCAATAAGCAATAA CGGTACGACA GCAG TGTCGTGCCG TTTGTTTTTTCTGCG TERM 5620 4449711 - 4449688 - f 87 -11 -3.90559 | opp_overlap 4449688 4449684 AGCAATAAGCAATAA CGGTACGACA GCAG TGTCGTGCCG TTTGTTTTTTCTGCG sugE 4449706 - 4450173 + | suppresser of groEL blc 4450703 - 4450170 - | outer membrane lipoprotein Blc TERM 5621 4450781 - 4450764 - R 95 -11.3 -4.46581 | GAAAAGCGCAGAAAA GGTCCGA AAAT TCGGACC CGATGAAATTTTACT ampC 4451958 - 4450792 - | beta-lactamase TERM 5622 4451946 - 4451970 + g 91 -12.7 -3.75629 | opp_overlap 4451948, overlap 4451947 CTGGTTTCCATACAA AACGGCCCGCC ATA GGCGGGCCGGA TTTACATTGGCGATG TERM 5623 4451947 - 4451969 + g 100 -16.2 -2.85056 | opp_overlap 4451948, overlap 4451946 TGGTTTCCATACAAA ACGGCCCGCC ATA GGCGGGCCGG ATTTACATTGGCGAT TERM 5624 4451968 - 4451948 - G 100 -19.7 -4.52589 | opp_overlap 4451947 4451946 GGTTTCCATACAAAA CGGCCCGCC ATA GGCGGGCCG GATTTACATTGGCGA frdD 4452347 - 4451988 - | fumarate reductase subunit D frdC 4452753 - 4452358 - | fumarate reductase subunit C frdB 4453498 - 4452764 - | fumarate reductase iron-sulfur subunit frdA 4455299 - 4453491 - | fumarate reductase flavoprotein subunit TERM 5625 4454302 - 4454327 + g 79 -2.6 -5.24129 | gap 1, overlap 4454304 GCTTTCGCCAGTTCG CAG-ATGAACG GCAGA CGTTCATGCAG TTTTTTCTCGCCGAG TERM 5626 4454391 - 4454363 - G 70 -7.3 -4.04206 | opp_overlap 4454364 4454366 4454387, overlap 4454366 4454368 GCAGGTCGAGATAAA CCACATCACCACG CGG CGTGGAGATGGTG TTGCCTTTACGCCAT TERM 5627 4454388 - 4454366 - G 75 -12 -3.06418 | opp_overlap 4454364 4454366 4454387, overlap 4454363 4454368 GGTCGAGATAAACCA CATCACCACG CGG CGTGGAGATG GTGTTGCCTTTACGC TERM 5628 4454366 - 4454388 + g 72 -12 -2.51888 | opp_overlap 4454366 4454363 4454368, overlap 4454364 4454387 GGTCGAGATAAACCA CATCACCACG CGG CGTGGAGATG GTGTTGCCTTTACGC TERM 5629 4456428 - 4456440 + G 70 -10.5 -2.71712 | overlap 4456427 CAAGATAACCGTAAG CGCGC GGC GCGCG GTTTGCCGCAGCACC yjeA 4455624 - 4456601 + | lysyl-tRNA synthetase TERM 5630 4456861 - 4456840 - T 79 -3 -5.34555 | opp_overlap 4456840 4456842 4456857, overlap 4456842 TCACACGATAAAAAA GATGAGTC TGATAG GACTCATA TTGATGATCTTTACT TERM 5631 4457346 - 4457360 + T 78 -5.8 -4.91084 | ATTTAGTATTGCTGT TAGTAA GCA TTACTA TTTTGTTATTAAATG TERM 5632 4458362 - 4458323 - T 100 -14.5 -3.8647 | gap 1, opp_overlap 4458331 ACTGATCATATGAAA TCCTG-CAACTCATCGTC TCTCC GGCGATGAGTTGTCAGGA AGTAATGCGTATGGA TERM 5633 4458331 - 4458353 + T 71 -9.9 -3.2963 | opp_overlap 4458323 TATGAAATCCTGCAA CTCATCGTC TCTCC GGCGATGAG TTGTCAGGAAGTAAT TERM 5634 4458419 - 4458454 + T 74 -10.6 -3.21912 | gap 1, opp_overlap 4458413 4458431 TGAAGATGATGTTAA GCTGCTAAATGA-GCCA CGT TGACATCATTTGGCAGC TTCATGCATTACAAA yjeP 4461774 - 4458463 - | hypothetical protein TERM 5635 4458969 - 4458990 + g 72 -5.7 -4.56775 | GATCGCGGATCGTTA CCGTATCGC CAAT GCGAATCGG TTTTTCGAACAGGAT psd 4462764 - 4461796 - | phosphatidylserine decarboxylase yjeQ 4463874 - 4462861 - | ribosome-associated GTPase TERM 5636 4463385 - 4463425 + g 74 -11.1 -3.19509 | overlap 4463374 4463383 4463381 4463379 4463386 TGCGGTAGATATCCA TCTGCTCGTTGACGAACGC CAT GCCTTCGTCGTCCAGCAGG TCTATCTTGTTGAGC TERM 5637 4463386 - 4463424 + g 76 -12.4 -2.51223 | overlap 4463374 4463385 4463383 4463381 4463379 GCGGTAGATATCCAT CTGCTCGTTGACGAACGC CAT GCCTTCGTCGTCCAGCAG GTCTATCTTGTTGAG yjeR 4463939 - 4464553 + | oligoribonuclease TERM 5638 4464675 - 4464655 - Tf 80 -5.5 -4.9792 | overlap 4464657 CACTTGAGATAAAAA CGCAAAAAA AAC TTTTTTGGG GGGTTGCAGAGGGAA TERM 5639 4464806 - 4464790 - Tf 73 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 5640 4464864 - 4464851 - Tf 72 -6.7 -4.28049 | TCCAAAATTTGAAAA GTGCT GCAA AGCAC AGACCACCCAATCGC TERM 5641 4465039 - 4465023 - Tf 73 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 5642 4465150 - 4465134 - Tf 73 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 5643 4465261 - 4465245 - Tf 73 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 5644 4465484 - 4465506 + TF 76 -4.9 -4.78753 | overlap 4465486 4465502 AATCAAGATTCCGTT TTGTCGAGT CGATC ACTTGACGA TTTTATTCGTCTTGA yjeS 4466748 - 4465564 - | hypothetical protein TERM 5645 4466410 - 4466396 - Gf 73 -10 -3.32844 | opp_overlap 4466395 4466394 CGGCCCAGCGCATAA CGGCTA ACA TAGCCG AGTTTGGGGTTTTTC TERM 5646 4467245 - 4467231 - gH 82 -11.4 -3.53012 | GCCTGCTGGCTGAAA CTGGCG CTA CGCCAG GCGCGGTGATCAACG yjeF 4466702 - 4468249 + | hypothetical protein yjeE 4468221 - 4468682 + | putative ATPase TERM 5647 4469025 - 4469015 - g 72 -6.8 -4.1899 | CGATCTTACCGAAAA CGGT AAA ACCG AAGCGGTGAAGCGGC amiB 4468701 - 4470038 + | N-acetylmuramoyl-l-alanine amidase II TERM 5648 4470270 - 4470243 - g 83 -5.4 -5.14563 | overlap 4470246 TGCGGTATCAAAAAA GATGAGCTGGCG CTGG CGCTGGCTCGTC ATGCCACCAGTAAAA TERM 5649 4471119 - 4471109 - g 77 -8.2 -4.09685 | opp_overlap 4471113 TGCCATCCCGGAAAA CCGC GTG GCGG CGGGGCGCAATCACT TERM 5650 4471335 - 4471299 - g 72 -4.9 -4.65895 | overlap 4471305 4471306 GCGCCGATGCAAAAA CCAAAAGCGCCGGAACC GCA GGAACCTGCACTTGCGG CGAACAGTCAGAGTT TERM 5651 4471338 - 4471305 - g 85 -7.3 -4.78661 | overlap 4471299 4471306 ATGCAAAAACCAAAA GCGCCGGAACCGCAG GAAC CTGCACTTGCGGCGA ACAGTCAGAGTTTTG TERM 5652 4471337 - 4471306 - g 78 -10.8 -3.4557 | overlap 4471299 4471305 TGCAAAAACCAAAAG CGCCGGAACCGCAG GAAC CTGCACTTGCGGCG AACAGTCAGAGTTTT TERM 5653 4471468 - 4471482 + G 71 -9.2 -3.53012 | AGGCACAATTGACGC CGGGTG AAG CGCCCG TTTGCGCCCAGCCGC TERM 5654 4471566 - 4471554 - g 74 -3.3 -4.91109 | TCGGCATTAGAAAAA GCGCA GTC TGCCC TAGCGGAATTGGGTA mutL 4470048 - 4471931 + | DNA mismatch repair protein miaA 4471969 - 4472874 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 5655 4472988 - 4473015 + G 81 -12.8 -3.14528 | gap 1, opp_overlap 4472987 4472984, overlap 4472981 AATCTTTACAAGATC CGTTCCTGAACGC ACT GCGT-CGGGAACG TGTTCCAGTTTCTAT TERM 5656 4473191 - 4473181 - g 72 -8.2 -3.78778 | overlap 4473182 TCATCACAGTAACAA CGCC GGT GGCG GTACCAGCAGTAACT hfq 4472960 - 4473268 + | RNA-binding protein Hfq TERM 5657 4474237 - 4474225 - g 71 -3.3 -4.77165 | GCGTGTACAAGAAAA CATCG AAG CGGTG AATACGGTTCTTGAA TERM 5658 4474388 - 4474352 - g 90 -9.5 -4.4768 | overlap 4474348 GACGAAGAGAACAAA CCGATCCGTGTCTG-GC TTTCC GCACAGAC-CGGAGCGG GGATACCACAGCTTT hflX 4473413 - 4474624 + | putative GTPase HflX TERM 5659 4475027 - 4475016 - g 70 -7.2 -4.03811 | opp_overlap 4475026 TATACCATTAAAGAA GCCG AACG CGGC GTGGTAACACGCTTT TERM 5660 4475722 - 4475709 - g 75 -5.3 -4.69664 | GAGACGATGGAAAAA GTGTT GGGT AACAC CCGCAAAGTGCTGGT TERM 5661 4475941 - 4475922 - g 81 -12.8 -3.1994 | GATATTATGGACCAA CGCCGCGC CAAC GCGCAGCG TAACGACTACCAGCG hflK 4474710 - 4475969 + | FtsH protease regulator HflK hflC 4475972 - 4476976 + | FtsH protease regulator HflC TERM 5662 4477033 - 4477005 - f 87 -9.6 -4.19678 | gap 1, opp_overlap 4477006, overlap 4477006 GTACAGGTCAATAAA GCCACCG-CATCC TCAG GGATGTCGGTGGT TTTCTTTTTCTATAA TERM 5663 4477032 - 4477006 - f 82 -13.1 -3.11325 | gap 1, opp_overlap 4477006, overlap 4477005 TACAGGTCAATAAAG CCACCG-CATCC TCAG GGATGTCGGTGG TTTTCTTTTTCTATA TERM 5664 4477006 - 4477032 + F 100 -13.1 -5.38839 | gap 1, opp_overlap 4477006 4477005 TACAGGTCAATAAAG CCACCG-CATCC TCAG GGATGTCGGTGG TTTTCTTTTTCTATA yjeT 4477058 - 4477255 + | hypothetical protein TERM 5665 4477729 - 4477719 - g 74 -8.2 -3.86194 | overlap 4477706 4477720 AACGCGCGTGAGAAA GCGC GTG GCGC GAAAGCGATCGGCAC TERM 5666 4477874 - 4477842 - g 72 -5.6 -4.56775 | opp_overlap 4477842 4477864, overlap 4477865 ACCTTCGCTGAAAAA CTGAAAGAAGTGAT GGAAT ATCACAACTTCCAG TTGGTTAACTACTAC purA 4477359 - 4478657 + | adenylosuccinate synthetase TERM 5667 4479061 - 4479047 - g 74 -2.7 -5.00616 | overlap 4479048 TGTTCGTGGAAAAAA TGGCG GCATT CGCCT GGGTAAACCGGCGAG yjeB 4478862 - 4479287 + | transcriptional repressor NsrR TERM 5668 4479449 - 4479425 - g 75 -5.7 -4.71482 | gap 1, overlap 4479426 ACCAAACGTGAAAAA CCGGCCAGCC GTGATG AGCTGGC-GG TAGAACTGCACATTG TERM 5669 4481664 - 4481653 - g 70 -7.2 -4.08806 | TGAGAAAAAAACGAA GCCG AAAG CGGC GAAGAAAGACGCGAG vacB 4479326 - 4481767 + | exoribonuclease R TERM 5670 4482066 - 4482091 + G 76 -10.5 -3.36492 | gap 1, overlap 4482067 TCTGTTACCGCTGAT TCACGCCCTTGA GTC TCA-GGGCGTGG TTATCCAGTTGGCAA TERM 5671 4482067 - 4482090 + G 73 -11.8 -2.61681 | gap 1, overlap 4482066 CTGTTACCGCTGATT CACGCCCTTGA GTC TCA-GGGCGTG GTTATCCAGTTGGCA TERM 5672 4482161 - 4482131 - g 74 -6 -4.4648 | opp_overlap 4482138 ATCTCGACGAGAAAA GCGACGGTGCCGTG CAT CAGGGCATTATCGC CCGCGTGAAGCCAGG yjfH 4481947 - 4482678 + | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 5673 4482717 - 4482698 - T 72 -6.4 -4.3534 | opp_overlap 4482699, overlap 4482699 TCTGAATTATGAAAA GCCATCCA GATT TGGATGGT TTTTTGGGTAATGCT TERM 5674 4482716 - 4482699 - T 71 -9.9 -3.20722 | opp_overlap 4482699, overlap 4482698 CTGAATTATGAAAAG CCATCCA GATT TGGATGG TTTTTTGGGTAATGC TERM 5675 4482699 - 4482716 + T 100 -9.9 -5.1101 | opp_overlap 4482699 4482698 CTGAATTATGAAAAG CCATCCA GATT TGGATGG TTTTTTGGGTAATGC SFV_4339 4482898 - 4482689 - | putative IS1 encoded protein insB 4482973 - 4483476 + | IS1 ORF2 TERM 5676 4483681 - 4483703 + F 74 -5.5 -4.57341 | gap 1, overlap 4483683 4483694 AGGAATGTTTATGGG AACCGCC-GC GCTG GCTGGCGGTA TTTTTAACGCAGCTT TERM 5677 4483683 - 4483701 + F 74 -8.1 -3.90048 | gap 1, overlap 4483681 4483694 GAATGTTTATGGGAA CCGCC-GC GCTG GCTGGCGG TATTTTTAACGCAGC TERM 5678 4483876 - 4483887 + G 79 -2.2 -5.27779 | gap 1, overlap 4483876 AACGTTGGCGCTAAT G-GGC GGT GCCGC TTTTTTCGTATTGAA TERM 5679 4484289 - 4484279 - g 80 -5.4 -5.00616 | GGTTCTGGCAAAAAA GAGT CTT ACTC TTCAGGCGGCTTTAC yjfM 4483742 - 4484380 + | hypothetical protein TERM 5680 4484745 - 4484768 + F 74 -8.2 -3.95036 | gap 1, opp_overlap 4484736 GTACAACGCCGATAC GCCGACCTCGT TGT ATGA-GTCGGC TTATTTCCAGTGGTT TERM 5681 4485615 - 4485578 - f 90 -14.3 -3.14132 | opp_overlap 4485582 TCTTTCTGTCATGAA TCCATGGCAGTGACCAT ACTA ATGGTGACTGCCATTGA TGGAGGGAGACACAG TERM 5682 4485582 - 4485611 + F 86 -13.7 -3.14132 | opp_overlap 4485578 TCTGTCATGAATCCA TGGCAGTGACCAT ACTA ATGGTGACTGCCA TTGATGGAGGGAGAC TERM 5683 4485976 - 4485988 + G 100 -10.5 -4.68724 | overlap 4485957 CCGGCGCATTTGTGG CGCGC GCG GCGCG TTTTATGTTACATGC TERM 5684 4486310 - 4486340 + G 100 -9.7 -5.24129 | gap 1 CGATGCGCATCTGGT GCTGGCGCAGACCG CGGG CGGTCTGT-CCTGC TTTTTTGTGCCGCGC TERM 5685 4486750 - 4486740 - g 74 -8.2 -3.9392 | opp_overlap 4486739 GCCGATGCCAAAGAA GCCC TGT GGGC GCGTTTATTTACGCC aidB 4485630 - 4487255 + | isovaleryl CoA dehydrogenase yjfN 4487647 - 4487372 - | hypothetical protein TERM 5686 4487616 - 4487658 + g 80 -5.7 -4.98531 | gap 1 GGATAAGTCACTAAT TGCAGC-GAGGGTGAAGCAA GTAA TTGTTTCATCGTCAGCTCCA TTTTTCGTTTCCCCA yjfO 4488224 - 4487796 - | hypothetical protein yjfP 4488307 - 4489056 + | esterase yjfQ 4489808 - 4489053 - | transcriptional repressor UlaR TERM 5687 4489907 - 4489866 - R 90 -13.1 -3.47762 | overlap 4489864 4489867 AATAGCCAGGAAATA CTACGCCGGATAGCGCGAA CTTC TCCACGCTATCCGGTATAA ACGACAGATTACAGG TERM 5688 4489906 - 4489867 - R 86 -14.4 -2.67934 | overlap 4489866 4489864 ATAGCCAGGAAATAC TACGCCGGATAGCGCGAA CTTC TCCACGCTATCCGGTATA AACGACAGATTACAG yjfR 4490971 - 4489916 - | putative L-ascorbate 6-phosphate lactonase ulaA 4491335 - 4492573 + | ascorbate-specific PTS system enzyme IIC sgaB 4492748 - 4493053 + | L-ascorbate-specific enzyme IIB component of PTS ptxA 4493063 - 4493527 + | L-ascorbate-specific enzyme IIA component of PTS TERM 5689 4493728 - 4493694 - g 73 -9.3 -3.59979 | gap 1 GTTCGCGATCTGAAA GCGCTCTACCCGCACA AAAT CGTGCTGGCAGA-CGC CAAAATTGCCGATGC ulaD 4493541 - 4494191 + | 3-keto-L-gulonate-6-phosphate decarboxylase TERM 5690 4494260 - 4494240 - g 100 -12.5 -4.7497 | GGCATCTATGAAAAA GCGCTCCCC GCC GGGGAGTGC TGGCTGGAACGCCTG sgaU 4494201 - 4495055 + | L-xylulose 5-phosphate 3-epimerase sgaE 4495055 - 4495741 + | L-ribulose-5-phosphate 4-epimerase TERM 5691 4495829 - 4495812 - T 100 -12.7 -5.40072 | CGTTTTTCAAAAAAA GCCCCCT GCGA AGGGGGC AAAGCAAACTATGGC yjfY 4496145 - 4495870 - | hypothetical protein TERM 5692 4495948 - 4495960 + g 71 -9.1 -3.46435 | overlap 4495946 4495945 TACGTGGTAGTACGT TGCGC CTT GCGCA TCTGTTTCTTCATTT rpsF 4496472 - 4496867 + | 30S ribosomal protein S6 rpsR 4497193 - 4497420 + | 30S ribosomal protein S18 rplI 4497462 - 4497911 + | 50S ribosomal protein L9 TERM 5693 4497925 - 4497967 + F 84 -8.4 -4.7254 | opp_overlap 4497913 4497937, overlap 4497932 4497937 AATTCGTTATTCAAC GAGACGTAAAAACGCCGACC ATT GGTCGGCGTTTTGCTTTCTA TTTTTCGTCAGGCAT TERM 5694 4497932 - 4497960 + F 100 -16.1 -3.33352 | opp_overlap 4497937, overlap 4497925 4497937 TATTCAACGAGACGT AAAAACGCCGACC ATT GGTCGGCGTTTTG CTTTCTATTTTTCGT TERM 5695 4497937 - 4497955 + F 100 -16 -4.68919 | opp_overlap 4497937, overlap 4497932 4497925 AACGAGACGTAAAAA CGCCGACC ATT GGTCGGCG TTTTGCTTTCTATTT TERM 5696 4497955 - 4497937 - f 100 -16 -4.72333 | opp_overlap 4497937 4497932 4497925 AACGAGACGTAAAAA CGCCGACC ATT GGTCGGCG TTTTGCTTTCTATTT SFV_4359 4498609 - 4498887 + | ISEhe3 orfA SFV_4360 4498944 - 4499525 + | ISEhe3 orfB SFV_4361 4500279 - 4499566 - | IS600 ORF2 SFV_4362 4500722 - 4500420 - | IS600 ORF1 SFV_4363 4500787 - 4501107 + | hypothetical protein TERM 5697 4501147 - 4501120 - T 86 -12 -3.62522 | opp_overlap 4501119, overlap 4501122 TAACGCGGCGAATAA TACCCGGTAGCA CTGG CGCTACCGGGTC AATGTATCAGGCGAC TERM 5698 4501145 - 4501122 - T 93 -14.6 -3.38991 | opp_overlap 4501119, overlap 4501120 ACGCGGCGAATAATA CCCGGTAGCA CTGG CGCTACCGGG TCAATGTATCAGGCG yjiW 4501495 - 4501154 - | endoribonuclease SymE TERM 5699 4501665 - 4501696 + r 91 -11 -4.36914 | opp_overlap 4501673, overlap 4501669 4501673 TAAATTTTGGTGATG TGAATAAAGCGGCT ATTT AGCCGCTTTATTGG TTTTGTGAGGGCGAG TERM 5700 4501669 - 4501692 + r 100 -14 -3.75115 | opp_overlap 4501673, overlap 4501665 4501673 TTTTGGTGATGTGAA TAAAGCGGCT ATTT AGCCGCTTTA TTGGTTTTGTGAGGG TERM 5701 4501688 - 4501673 - R 87 -10.4 -4.1822 | opp_overlap 4501669 4501665 4501673 GGTGATGTGAATAAA GCGGCT ATTT AGCCGC TTTATTGGTTTTGTG TERM 5702 4501673 - 4501688 + r 93 -10.4 -4.48176 | opp_overlap 4501673, overlap 4501669 4501665 GGTGATGTGAATAAA GCGGCT ATTT AGCCGC TTTATTGGTTTTGTG SFV_4365 4503377 - 4501716 - | hypothetical protein TERM 5703 4501886 - 4501906 + g 82 -3.3 -5.31072 | TAATATTGTAAAAAC TGTCAGAAT TAA GTTTTGGCA TTTTTATTCTGTTCT SFV_4366 4504867 - 4503377 - | putative restriction modification enzyme M subunit TERM 5704 4504281 - 4504263 - G 70 -3.7 -4.67982 | overlap 4504265 GCGCAGGCAAGAAAA CCGCCCG TACCG CAGGCCG GGTCCATAATGGATT TERM 5705 4504530 - 4504547 + g 71 -3.3 -4.87665 | overlap 4504531 CTGAACGCCTGCTTC ACCACGT AGCC GCGTGGG TTTTTATCGATAGGC TERM 5706 4504902 - 4504865 - G 85 -7 -4.7373 | overlap 4504868 4504869 GTATTCCATGAAAAA CAAGGCCTTCTGCAAC ATGATG GTTGCAGAAGGCGCAA AAGAGAGTTGTTAAG TERM 5707 4504899 - 4504868 - R 100 -13.1 -4.47707 | overlap 4504865 4504869 TTCCATGAAAAACAA GGCCTTCTGCAAC ATGATG GTTGCAGAAGGCG CAAAAGAGAGTTGTT TERM 5708 4504898 - 4504869 - R 100 -16.6 -3.27901 | overlap 4504868 4504865 TCCATGAAAAACAAG GCCTTCTGCAAC ATGATG GTTGCAGAAGGC GCAAAAGAGAGTTGT SFV_4367 4507345 - 4504913 - | putative restriction modification enzyme R subunit TERM 5709 4506783 - 4506804 + g 85 -7.3 -4.79174 | AGAACGCGGTTTTGC CCGTTGGAG ACGG CTTCAATGG TTTTGTTGATTGCCT SFV_4368 4507761 - 4507480 - | putative IS1 encoded protein insB 4507836 - 4508339 + | IS1 ORF2 TERM 5710 4508423 - 4508413 - f 78 -5.4 -4.8083 | CAATACGACGAAAAA TAGC ATC GCTA AGTAATTTAGGGGTA SFV_4370 4508478 - 4509116 + | hypothetical protein TERM 5711 4509160 - 4509127 - T 76 -9 -3.74077 | gap 1 TCTGACATATCTAAA GAGTTCCACTCGTAA TAATG TTGCG-GTGGAACTC TCAAAAAGTTGATCT yjiA 4510141 - 4509185 - | putative GTP-binding protein YjiA yjiX 4510355 - 4510152 - | hypothetical protein TERM 5712 4510395 - 4510378 - R 100 -14.1 -4.51812 | TCTGATAAGAACAAA GCCCCGC CGAA GCGGGGC TAAACACGGTTAGTG yjiY 4512570 - 4510405 - | putative carbon starvation protein TERM 5713 4512942 - 4512914 - R 100 -9.6 -5.2291 | gap 1, overlap 4512915 AGATCACAATAAAAA TGCCCCTTCGACG AATG CGT-GAAGGGGCT GGAGCTTAAATCGCA TERM 5714 4512941 - 4512915 - R 95 -13.1 -3.72119 | gap 1, overlap 4512914 GATCACAATAAAAAT GCCCCTTCGACG AATG CGT-GAAGGGGC TGGAGCTTAAATCGC hpaC 4513460 - 4512948 - | component C of the 4HPA-hydroxylase TERM 5715 4515253 - 4515228 - R 76 -11.9 -2.62144 | overlap 4515227 GGCAAATCATAATAT TCCCCGCTAAC AAGG GCTAACGGGGA CGGAATTTTTTATGG SFV_4376 4516119 - 4515289 - | hypothetical protein TERM 5716 4516236 - 4516224 - R 71 -7.7 -3.87815 | opp_overlap 4516235 TCTCAGGTTGATAAA TGGTC AGC GACCA CGGAATTGTGTTGGT hpaA 4517117 - 4516227 - | putative 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein hpaX 4518482 - 4517127 - | putative 4-hydroxyphenylacetate permease hpaI 4519079 - 4518504 - | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase TERM 5717 4518598 - 4518561 - G 76 -9.1 -3.82433 | gap 1, opp_overlap 4518561 AGAACTATTACCAAA CCGTGCT-GCCAGCGC TTCGGCG GCGCGGGCGAGCAGGG TGGTGTCAACGCCGA hpaH 4520117 - 4519314 - | 2-oxo-hept-3-ene-1, 7-dioate hydratase TERM 5718 4519501 - 4519516 + g 70 -6 -4.20516 | opp_overlap 4519501, overlap 4519505 GGATGATTCAGCACA CCAGCG GCGA CGCCGG TTTCTTCAATCACGC TERM 5719 4520040 - 4520060 + g 80 -5.4 -4.88736 | gap 1, overlap 4520029 4520037 4520041 GTAATCCAGCGAGAT C-GCGCGGA TCTG TTCGCGCTG TTTTTCTGCCTGATC TERM 5720 4520041 - 4520058 + g 81 -9.1 -4.06182 | overlap 4520029 4520037 4520040 TAATCCAGCGAGATC GCGCGGA TCTG TTCGCGC TGTTTTTCTGCCTGA TERM 5721 4520131 - 4520154 + r 77 -10.2 -3.4072 | ATAGCGATATCCTGT GGCATTGCCG GATG CGGCAGCGCC TTATCATCCGGCCTG hpaF 4520565 - 4520185 - | 5-carboxymethyl-2-hydroxymuconate delta-isomerase hpaD 4521429 - 4520575 - | homoprotocatechuate dyoxygenase TERM 5722 4520888 - 4520869 - G 82 -9.2 -4.16842 | overlap 4520885 CTGATCGTCAATAAA GCGGTGCG ATAA CGAACCGC TGGCAAGGACCGCCA hpaE 4522897 - 4521431 - | 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase hpaG 4524183 - 4522894 - | 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase TERM 5723 4524208 - 4524233 + H 72 -4.9 -4.65747 | overlap 4524204 4524209 4524212 TCGGATTCGATCATC TTAATCATTAA TATG TTAATGATTAC TTTTATTCCCGATTG TERM 5724 4524707 - 4524691 - g 72 -8.7 -3.72695 | overlap 4524700 AGTGTTGCGATTAAA GCCGATC AAT GATCAGC GGAAGCTCTATATCT hpcR 4524455 - 4524901 + | regulator of the 4HPA-hydroxylase operon TERM 5725 4524920 - 4524930 + F 80 -6.8 -4.67353 | opp_overlap 4524920 TTTAGTATCTGATAA CCAG CGC CTGG TTTTTCCATGGATGG TERM 5726 4524956 - 4524967 + F 72 -3 -4.98531 | GATGGCGGGTTACAC CTTT TCAT AAAG TTTTTGCTTTCCAGG TERM 5727 4525045 - 4525059 + G 72 -7.1 -4.20883 | GTATCAAGATCGTGA CCAGC TTACT GCTGG TTTTGGCCGTTTTTG TERM 5728 4525093 - 4525103 + G 82 -3.2 -5.18357 | TTTTACAACTGACAT CAGG CGG TCTG TTTTTTAATGCCTTA TERM 5729 4525370 - 4525331 - g 91 -5.6 -5.42862 | gap 1, opp_overlap 4525365, overlap 4525347 4525348 ACAGGCGGAAAAAAA CTG-GGCGGATTACGAAGC GTT GCCGCGTGACCCGCGTCAG AGCACCGCCGCAGCG TERM 5730 4526119 - 4526101 - g 70 -5.2 -4.37886 | opp_overlap 4526102, overlap 4526102 CCAGTTCGCAGAAAA TCGCCGAT ATT ATCAGCGT AATTGACGGCATTAT tsr 4525020 - 4526684 + | methyl-accepting chemotaxis protein I, serine sensor receptor TERM 5731 4526724 - 4526697 - T 100 -12.2 -4.8543 | gap 1 TAATCGCCATAAAAA TGCCCGATAAGCA AAA TG-TTATCGGGCA TAGGGAGTTTAATCT yjiZ 4528094 - 4526733 - | putative transport protein yjjM 4529223 - 4528528 - | hypothetical protein TERM 5732 4528950 - 4528960 + g 70 -4 -4.69656 | TGAAAAAAGCCTGCT CAAA CAC TTTG TTTTGTTCACTCATT yjjN 4529617 - 4530384 + | putative oxidoreductase TERM 5733 4530412 - 4530438 + T 100 -5.8 -6.32017 | opp_overlap 4530403 ATTAAAGTTGCCATG CAGCGTCCGG GGAAGTG TTGGGCGCTG TTTTTTTTGTTTCTT TERM 5734 4530512 - 4530478 - T 100 -15.8 -3.33261 | TTGTAAGCCGGAGAA GGCGTGTAGGTCGCAC CCT ATGCGACCTACACATC AGTCAGGAATTACCC mdoB 4532735 - 4530522 - | phosphoglycerol transferase I TERM 5735 4531809 - 4531795 - G 72 -5.7 -4.52589 | GTGCGCGAGATAAAA CCATC CGGGT GATGG GTATCGACTGTCAGG yjjA 4533563 - 4533066 - | hypothetical protein dnaC 4534346 - 4533609 - | DNA replication protein DnaC TERM 5736 4534224 - 4534238 + g 72 -7 -4.15703 | ACGTTCGAGAGCGGC GGAGCG GAT CGCCCC TTGTTCTTTCTGCCA dnaT 4534900 - 4534349 - | primosomal protein I TERM 5737 4534445 - 4534459 + g 77 -2.7 -5.07486 | GGCACGACCGATTTG CAGGC TGCGC GCCAG TTTTTGTTGCCACTG TERM 5738 4534978 - 4534943 - R 83 -13.4 -3.26947 | opp_overlap 4534945 4534947 4534977 TAACTTTTATAGTAA CACACGGAGGAGAG GAGGCTGT CTCTCATCCGTGTG CTTAAGCGAGGCAAT TERM 5739 4534945 - 4534976 + r 73 -10.9 -2.70932 | opp_overlap 4534943, overlap 4534947 ACTTTTATAGTAACA CACGGAGGAGAGG AGGCTG TCTCTCATCCGTG TGCTTAAGCGAGGCA yjjB 4535468 - 4534995 - | hypothetical protein yjjP 4536229 - 4535459 - | putative structural protein TERM 5740 4536189 - 4536179 - G 70 -5.4 -4.43397 | TTGCAAAAGAAATAA TCCA CAC TGGA TACAAAGCCGCGTTA TERM 5741 4536208 - 4536196 - G 70 -6.9 -4.05747 | CACACTGGATACAAA GCCGC GTT ACGGC TCGCTGTTGCTCAGT SFV_4396 4536972 - 4536754 - | putative IS1 encoded protein insB 4537047 - 4537550 + | IS1 ORF2 TERM 5742 4537998 - 4537980 - gf 86 -3.9 -5.41143 | gap 1 CAGCGCCCAAAAAAA CAGTGCGA TGCG TCG-ACTG GCAATTCACAGCAAC yjjQ 4537552 - 4538136 + | putative regulator bglJ 4538094 - 4538771 + | DNA-binding transcriptional activator BglJ fhuF 4539597 - 4538809 - | ferric iron reductase involved in ferric hydroximate transport TERM 5743 4539127 - 4539147 + g 73 -11.9 -2.80922 | overlap 4539125 4539123 4539129 GCTGATTAACGTTTC CATTCGCTG CTG CGGCGAATG TGGTGTTGCGTTTTT SFV_4401 4539627 - 4539974 + | putative inner membrane protein rsmC 4541643 - 4540612 - | 16S ribosomal RNA m2G1207 methyltransferase TERM 5744 4541988 - 4541972 - gH 79 -2.2 -5.26316 | overlap 4541973 TGACGCCAGAAAAAA TCGCGA TGCTG CCGCAA GGCAGTCGCTGCAAC holD 4541746 - 4542159 + | DNA polymerase III subunit psi rimI 4542128 - 4542574 + | ribosomal-protein-alanine N-acetyltransferase yjjG 4542589 - 4543266 + | nucleotidase TERM 5745 4544285 - 4544264 - g 70 -5.9 -4.18018 | gap 1 GCTTCGTATTTAAAA TTCAGG-CCA ACA TGGACCCGAA ACACCGCGACCGCGT prfC 4543357 - 4544946 + | peptide chain release factor 3 TERM 5746 4544957 - 4544982 + F 86 -14.7 -2.68338 | overlap 4544955 4544954 ATTAATTCTTGCCTC CAGGGCGCGGT AGCC GCTGCGCCCTG TCAATTTCCCTTCCT osmY 4545339 - 4545944 + | periplasmic protein TERM 5747 4546282 - 4546264 - f 100 -14.6 -3.67989 | opp_overlap 4546264 AAAATTTTATCCAAA GCCAGTCC AGC GGACTGGC TTTTGCGGTTTTAGC TERM 5748 4546264 - 4546282 + F 100 -14.6 -4.28049 | opp_overlap 4546264 AAAATTTTATCCAAA GCCAGTCC AGC GGACTGGC TTTTGCGGTTTTAGC TERM 5749 4546721 - 4546731 + G 74 -8.2 -3.90744 | opp_overlap 4546719 CGTTGCAAATGGATA CCGC CGC GCGG TTGTTTGACAGCGGC yjjU 4546354 - 4547427 + | hypothetical protein yjjV 4547424 - 4548206 + | putative deoxyribonuclease YjjV TERM 5750 4548380 - 4548348 - T 76 -12 -2.57344 | opp_overlap 4548314 4548313 4548357, overlap 4548314 4548347 CAGTTGGCGCACAAT GCCTGATGCGACGC TTGAC GCGTCTTATCAGGC CTACAAGTCTGTGCC yjjW 4549283 - 4548420 - | putative activating enzyme TERM 5751 4549230 - 4549206 - GT 78 -6.4 -4.57569 | gap 1, overlap 4549208 GCAGCCCTGCAAAAA CAGAGCCAGAC GACT GCCTGGCCC-G TCAACGCAGGAGAAG TERM 5752 4549229 - 4549208 - GT 81 -10.1 -3.90316 | overlap 4549206 AGCCCTGCAAAAACA GAGCCAGAC GACT GCCTGGCCC GTCAACGCAGGAGAA yjjI 4550796 - 4549255 - | hypothetical protein TERM 5753 4551663 - 4551643 - g 88 -5.3 -5.24129 | TGGGCGTAGAAAAAA CCGTTGGTT TCA AACCGGCGG GCGGCGTGCGTACTG deoC 4551054 - 4551833 + | deoxyribose-phosphate aldolase TERM 5754 4552414 - 4552456 + G 72 -8.5 -3.85698 | gap 1, overlap 4552403 AAGACGTCGGCGTGG CGATTATCGGTCAGA-CCAG TTCA CTGGCTCCGGCTGATAAACG TTTCTACGCGACCCG deoA 4551960 - 4553282 + | thymidine phosphorylase deoB 4553334 - 4554557 + | phosphopentomutase TERM 5755 4554566 - 4554585 + F 93 -10.7 -4.38927 | GTTCTGATGGATTTG GGCGGAG CGTTGA CTCCGCC TTTGTTATGTCACAA deoD 4554614 - 4555333 + | purine nucleoside phosphorylase TERM 5756 4555367 - 4555390 + T 100 -12.4 -4.87037 | CGATTGTCGTGTTAA GCCGGAGTGG GGGA CTGCTCCGGC TTTTTAGTATCTATT SFV_4419 4555757 - 4555494 - | hypothetical protein smp 4557476 - 4556832 - | hypothetical protein serB 4557582 - 4558550 + | phosphoserine phosphatase TERM 5757 4559388 - 4559375 - g 80 -5.2 -4.88067 | ACGCAGCCATAAAAA CCGC TTCGGC GCGG TGAATGAGCTGGGCG sms 4558599 - 4559981 + | DNA repair protein RadA TERM 5758 4560150 - 4560126 - g 72 -5 -4.67641 | gap 1, overlap 4560127 ATGCCAAAATTAAAA GCC-CCAGC GCGCAAAA GCTGGAGGC ATTGCACCGTTTTTT TERM 5759 4560904 - 4560919 + G 70 -6.1 -4.15222 | opp_overlap 4560904 4560902 4560905 TTTTGCAGTGAAATA CGCCA ATAAAG TGGCG TTTATTGACACCGAT nadR 4560002 - 4561234 + | nicotinamide-nucleotide adenylyltransferase TERM 5760 4561358 - 4561337 - T 72 -2.9 -5.03145 | gap 1, overlap 4561325 4561339 CAAGGTTTGAAAAAA CCTGCACGGG TGA CCCGC-CACG AAATTGAGGATGCTA TERM 5761 4561424 - 4561468 + T 73 -7.8 -4.11371 | opp_overlap 4561396 4561395, overlap 4561396 ATCCGGCATTCGGTG CTCAATGCCTGATGCGACGC TTACC GCGTCTTATCAGGCCTACAG TTTTACAACGTATTG TERM 5762 4561501 - 4561532 + T 83 -10 -4.15508 | opp_overlap 4561511, overlap 4561502 ATTGCTGGTTTTGTA GGCCGGATAAGGCG TTCG CGCCGCATCCGGCA TTTTACGCATTACTT TERM 5763 4561502 - 4561531 + T 82 -13.5 -3.08581 | opp_overlap 4561511, overlap 4561501 TTGCTGGTTTTGTAG GCCGGATAAGGCG TTCG CGCCGCATCCGGC ATTTTACGCATTACT yjjK 4563188 - 4561542 - | putative ABC transporter ATP-binding protein TERM 5764 4561592 - 4561604 + g 90 -4.7 -5.36965 | overlap 4561583 GCTCCAGCGCGTCTG CGCCC AGC GTGCG TTTTTTGTACTCTTC slt 4563420 - 4565357 + | lytic murein transglycosylase TERM 5765 4565489 - 4565508 + G 72 -6.4 -4.3898 | opp_overlap 4565489 4565488 GCGATGGCAGAACAG CGTCACCA GGAG TGGTTACG TTTTGTCGACCTGCT trpR 4565447 - 4565773 + | Trp operon repressor yjjX 4566387 - 4565905 - | hypothetical protein TERM 5766 4566087 - 4566103 + g 70 -5.8 -4.18018 | gap 1 TTGCCGAACGCGCCT CGCC-GC GCTG GCTGGCG TTTTCAATCACCACC TERM 5767 4566212 - 4566227 + g 72 -8.2 -3.76224 | TTTGCTACCCGATTT CGTGCG CCAG CGCGCG TTTCCTCACTGCCAA gpmB 4566430 - 4567077 + | phosphoglycerate mutase rob 4567943 - 4567074 - | right origin-binding protein TERM 5768 4568600 - 4568588 - g 74 -6.2 -4.56775 | opp_overlap 4568587 4568588 AGGTTCGCCGAAAAA CGCG ATTAG CGCG GTTCCTGTCATGCCG creA 4568154 - 4568627 + | hypothetical protein creB 4568640 - 4569329 + | DNA-binding response regulator CreB creC 4569329 - 4570753 + | sensory histidine kinase CreC TERM 5769 4571485 - 4571499 + G 77 -2.8 -5.13521 | opp_overlap 4571485 GACCTTAACCAGCAA CTGG CCGCATC CCAG TTTTTTAGGTGATTT creD 4570811 - 4572163 + | hypothetical protein TERM 5770 4572203 - 4572174 - T 100 -13.7 -4.64144 | opp_overlap 4572180, overlap 4572180 AATAAGGTTGAAAAA TAAAAACGGCGCT AAAA AGCGCCGTTTTTT TGACGGTGGTAAAGC TERM 5771 4572197 - 4572180 - T 100 -12.7 -5.61881 | opp_overlap 4572180, overlap 4572174 GTTGAAAAATAAAAA CGGCGCT AAAA AGCGCCG TTTTTTTGACGGTGG TERM 5772 4572180 - 4572197 + T 100 -12.7 -5.42259 | opp_overlap 4572180 4572174 GTTGAAAAATAAAAA CGGCGCT AAAA AGCGCCG TTTTTTTGACGGTGG arcA 4572938 - 4572222 - | two-component response regulator TERM 5773 4572447 - 4572459 + g 71 -9.1 -3.44051 | opp_overlap 4572434 CATGGCGCGGAACTC GCTGC GCG GCAGC TTGTACTGCTCGCCA lasT 4573574 - 4574260 + | putative RNA methyltransferase