TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.394216 %AT, 3573550 nt, 37420 terms. Intergenic: 0.43154 %AT, H2T: 329150 nt, 3339 terms; T2T: 137484 nt, 3435 terms; H2H: 138975 nt, 2658 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|99077902|ref|NC_008042.1| Silicibacter sp. TM1040 plasmid unnamed, complete sequence (length 130973) TM1040_3767 27 - 5300 + | hemolysin-type calcium-binding region TM1040_3768 6566 - 7546 + | hypothetical protein TM1040_3769 7780 - 8247 + | hypothetical protein TERM 1 8556 - 8532 - f 71 -8.5 -3.89182 | opp_overlap 8552, overlap 8526 8533 GAATAAGAACCCAAA GCTGCACTCGC GAA GCGAGTTCAGA CGGTGGCCGGAAGCG TERM 2 8555 - 8533 - f 73 -12 -2.92425 | opp_overlap 8552, overlap 8532 8526 AATAAGAACCCAAAG CTGCACTCGC GAA GCGAGTTCAG ACGGTGGCCGGAAGC TERM 3 9834 - 9847 + F 74 -4.5 -4.7254 | GTCGTCTTGCGACTT CGCAG AGCC CTGTG TTTTTAATAAACAGT TERM 4 10356 - 10311 - f 74 -10.3 -3.64703 | opp_overlap 10311 10314 10316, overlap 10314 CCCGCTTCATCGAAA GAACTGTTCCTCCAATGACCC CGAG GGGTCTAAGGAGGAGCTGTTC TATGTCACACTACGC TERM 5 10311 - 10356 + F 74 -12.5 -2.88544 | opp_overlap 10311 10314, overlap 10314 10316 CCCGCTTCATCGAAA GAACTGTTCCTCCAATGACCC CGAG GGGTCTAAGGAGGAGCTGTTC TATGTCACACTACGC TERM 6 11143 - 11160 + F 70 -11.3 -3.02043 | AGGAGTACTTAGCCT TCGGAGG TGGT CCTCCGA TCTTCAGACAGGATT TERM 7 11633 - 11602 - f 79 -10.8 -3.92373 | gap 1, opp_overlap 11612, overlap 11604 11608 GATCTGATCCAGAAA GAGACAGCCACGCCC GAA GGGCGTTGC-GTCAC AACACAGTAGCTGGT TERM 8 11631 - 11604 - f 79 -12 -3.5511 | gap 1, opp_overlap 11612, overlap 11602 11608 TCTGATCCAGAAAGA GACAGCCACGCCC GAA GGGCGTTGC-GTC ACAACACAGTAGCTG TERM 9 11628 - 11608 - f 78 -12.5 -3.23737 | opp_overlap 11612, overlap 11604 11602 ATCCAGAAAGAGACA GCCACGCCC GAA GGGCGTTGC GTCACAACACAGTAG TERM 10 11968 - 12026 + F 75 -12.5 -2.92442 | overlap 11969 CAAGCGATTGCCGCA GTGTCCGATTGGACGTTTGAACCACCC GCGCG GGGTGTCTCAAAGGTCTAATCGAACCC TCTGATCTATTGGAT TERM 11 12303 - 12322 + F 78 -6.4 -4.77165 | opp_overlap 12307, overlap 12292 12305 TGAGCTACCGACCCA GACAGACC GGTA GGTCTGTG TTTTGTTCTGAAGAG TERM 12 12305 - 12320 + F 73 -9 -4.00512 | opp_overlap 12307, overlap 12292 12303 AGCTACCGACCCAGA CAGACC GGTA GGTCTG TGTTTTGTTCTGAAG TERM 13 13330 - 13350 + F 70 -9.7 -3.53343 | overlap 13317 TAGTTTTGGAGGCAG TTCCAGGGT TGA GCCCTGGGA TTTCACCCCCAACTT TM1040_3770 14155 - 14565 + | hypothetical protein TERM 14 14857 - 14900 + T 87 -16 -3.29461 | gap 1, opp_overlap 14860 14862 14869, overlap 14867 14869 14891 CGCACGCGCACCACG AGACACGACAGAGGGCCGCGC TTG GCGCGGCCCTCTGTC-TGCAA TTCTGCGACGGCTTC TERM 15 14897 - 14860 - T 100 -26.5 -2.82635 | gap 1, opp_overlap 14857 14867 14869 14891, overlap 14862 14869 ACGCGCACCACGAGA CACGACAGAGGGCCGCGC TTG GCGCGGCCCTCTGTC-TG CAATTCTGCGACGGC TERM 16 14896 - 14862 - T 100 -25.8 -2.96216 | opp_overlap 14857 14867 14869 14891, overlap 14860 14869 GCGCACCACGAGACA CGACAGAGGGCCGCGC TTG GCGCGGCCCTCTGTCT GCAATTCTGCGACGG TERM 17 14867 - 14891 + T 100 -22.9 -2.92653 | opp_overlap 14862 14860 14869, overlap 14857 14869 CCACGAGACACGACA GAGGGCCGCGC TTG GCGCGGCCCTC TGTCTGCAATTCTGC TERM 18 14869 - 14889 + T 100 -19.7 -3.01261 | opp_overlap 14862 14860 14869, overlap 14867 14857 ACGAGACACGACAGA GGGCCGCGC TTG GCGCGGCCC TCTGTCTGCAATTCT TERM 19 14889 - 14869 - T 100 -19.7 -2.99813 | opp_overlap 14869 14867 14857, overlap 14862 14860 ACGAGACACGACAGA GGGCCGCGC TTG GCGCGGCCC TCTGTCTGCAATTCT TM1040_3771 16031 - 15000 - | hypothetical protein TERM 20 15873 - 15914 + g 73 -10.2 -3.61536 | gap 2, opp_overlap 15858, overlap 15875 15910 CCGCATCTCCGTTCC GA-CGCGGCG-CACGGCGTA CCAA TAGGCCTTGTCGCCGCGCTC TTTGAGCGTTGGCTT TERM 21 16143 - 16123 - R 74 -10.3 -3.65426 | opp_overlap 16138, overlap 16115 16124 TCAGAAACGGCGAAA GGGCCGCGC CAA GCGCGACCG CGCCTCAGTCGTTCA TERM 22 16142 - 16124 - R 76 -13.8 -2.78774 | opp_overlap 16138, overlap 16115 16123 CAGAAACGGCGAAAG GGCCGCGC CAA GCGCGACC GCGCCTCAGTCGTTC TM1040_3772 17152 - 16148 - | hypothetical protein TERM 23 17978 - 17989 + G 88 -7.2 -5.00616 | overlap 17977 CTGGATGAGGTACTG CGCC TGCG GGCG TTTTTTGCGGCCCAA TM1040_3773 17636 - 19045 + | cobyrinic acid a,c-diamide synthase TERM 24 19198 - 19179 - g 78 -4.8 -4.86621 | overlap 19180 AGCGGCAATGAAAAA GCTGGGGC CAGT GCCCCTGG TCCGCTCTCGATGGG TM1040_3774 19119 - 20249 + | ParB-like nuclease TERM 25 20281 - 20314 + T 71 -7.5 -4.09243 | opp_overlap 20285, overlap 20285 GATACAGGACAAGGT AAAAGATCCTGATGC TTCT GTATCAGGATCTTAC TTTTGAAAGAATATC TERM 26 20310 - 20285 - T 86 -10.5 -4.33151 | opp_overlap 20285 20281 CAGGACAAGGTAAAA GATCCTGATGC TTCT GTATCAGGATC TTACTTTTGAAAGAA TERM 27 20285 - 20310 + T 81 -12.7 -3.66908 | opp_overlap 20285, overlap 20281 CAGGACAAGGTAAAA GATCCTGATGC TTCT GTATCAGGATC TTACTTTTGAAAGAA TM1040_3775 21658 - 20354 - | UDP-glucose 6-dehydrogenase TERM 28 21525 - 21554 + g 71 -6.4 -4.23045 | overlap 21525 21525 21545 21548 CCGGGTTCGTAGATC GG-CGCCTCGCCTG CTTG CAGGCGCG-CGACC TTTGTTGCGTCCTTG TERM 29 21827 - 21864 + r 85 -12.9 -3.76781 | opp_overlap 21856, overlap 21817 21829 21830 21832 21856 TGATTTAGTTCCGCT TCGGACCTATTGTTTCG CGCG CGAAACAATAGGTCATA TTTGCTGACCTATTT TERM 30 21829 - 21862 + r 90 -15.5 -3.46088 | opp_overlap 21856, overlap 21817 21827 21830 21832 21856 ATTTAGTTCCGCTTC GGACCTATTGTTTCG CGCG CGAAACAATAGGTCA TATTTGCTGACCTAT TERM 31 21830 - 21861 + r 91 -19 -2.67171 | opp_overlap 21856, overlap 21817 21829 21827 21832 21856 TTTAGTTCCGCTTCG GACCTATTGTTTCG CGCG CGAAACAATAGGTC ATATTTGCTGACCTA TERM 32 21832 - 21859 + r 82 -15.8 -2.87501 | opp_overlap 21856, overlap 21817 21830 21829 21827 21856 TAGTTCCGCTTCGGA CCTATTGTTTCG CGCG CGAAACAATAGG TCATATTTGCTGACC TERM 33 22332 - 22371 + r 73 -9.4 -4.01137 | opp_overlap 22323 22343, overlap 22325 22323 22322 22320 22334 GTATAATAGGTCCGA TTCGTACCTAATGTTTCG CGCG CGAAACATTAGGTCAGTA TTTATGACTTATGTG TERM 34 22334 - 22369 + r 79 -12 -3.58879 | opp_overlap 22323 22343, overlap 22325 22323 22322 22320 22332 ATAATAGGTCCGATT CGTACCTAATGTTTCG CGCG CGAAACATTAGGTCAG TATTTATGACTTATG TM1040_3776 23481 - 22480 - | NAD-dependent epimerase/dehydratase TM1040_3777 24642 - 24265 - | XRE family transcriptional regulator TM1040_3778 26596 - 25175 - | mannose-1-phosphate guanylyltransferase (GDP) TERM 35 27630 - 27599 - H 70 -5 -4.37886 | gap 1, opp_overlap 27599 27610 27627, overlap 27600 GCAGGTCCGAGAAAA CCGGCAAGCGCCGCC TTT GGTGTCGGTT-CCGG TTGAGAATTCCGGTT TERM 36 28487 - 28475 - g 71 -6.9 -4.17556 | opp_overlap 28479 GACAGGGGCAACAAA GCGGC TGG ACCGC TTGGGCCGGTTCAAT TM1040_3779 27852 - 28736 + | hypothetical protein TERM 37 28762 - 28785 + T 86 -10.2 -4.3208 | overlap 28748 28768 CGCCGCAATGATCGA GGCTTCCGTC AGAA GGCGGGGGCC TTTTGCGTTCTGGCG TERM 38 29106 - 29129 + T 71 -11.6 -3.1364 | opp_overlap 29107 GAGCCTAAGCAAAAA AGGCGGCGCG AAGG TGCGCCGCCA TTAACTCGTTACCTA TERM 39 29128 - 29107 - T 100 -14.4 -5.27477 | opp_overlap 29106 AGCCTAAGCAAAAAA GGCGGCGC GAAGGT GCGCCGCC ATTAACTCGTTACCT TM1040_3780 30001 - 29156 - | hypothetical protein TERM 40 29384 - 29347 - G 75 -8.3 -4.14392 | opp_overlap 29349 29354 CGCCAACCGGCAAAA CGTCGGCCGGTTCACCA CCGA TTGTGATCAGGCCGATG GATTCAAGTGTACCG TM1040_3781 30502 - 30047 - | protein-methionine-S-oxide reductase TERM 41 30552 - 30528 - R 78 -12.9 -3.34398 | overlap 30526 TGGTCGTTTGAAAGA CTCCCCTCG CACAACT CGAGGGGAG AGTTAGCGCAGTGAG TM1040_3782 31124 - 30573 - | beta-Ig-H3/fasciclin TERM 42 31199 - 31213 + r 78 -4.3 -5.00884 | opp_overlap 31209, overlap 31202 31209 TGAGCGAGAGAAGTT TCAGA AAAAA TCTGA TTTTTTGCAAAAAAT TERM 43 31202 - 31239 + r 89 -13.1 -3.97709 | opp_overlap 31209, overlap 31199 31209 GCGAGAGAAGTTTCA GAAAAAATCTGATTTTT TGCA AAAAATCAGATTTTCTC TTCTTATTAGGTGCT TERM 44 31209 - 31232 + r 91 -9.8 -4.83518 | opp_overlap 31209, overlap 31199 31202 AAGTTTCAGAAAAAA TCTGATTTTT TGCA AAAAATCAGA TTTTCTCTTCTTATT TERM 45 31232 - 31209 - R 100 -9.8 -5.25803 | opp_overlap 31199 31209 31202 AAGTTTCAGAAAAAA TCTGATTTTT TGCA AAAAATCAGA TTTTCTCTTCTTATT TM1040_3783 31932 - 31246 - | hypothetical protein TM1040_3784 32483 - 31929 - | RNA polymerase sigma factor TERM 46 32790 - 32814 + H 72 -6.4 -4.40237 | gap 1, overlap 32790 CATAGTGTGCCGAGA GGGG-GCTGTG GAGA CACGGTTCCCC TTTTCCTATGTGGTC TM1040_3785 33104 - 35482 + | hemolysin-type calcium-binding region TERM 47 35798 - 35822 + F 95 -18.7 -3.17075 | GACCTCTCGGTACTT TGCACTTCGGC GAA GCCGAAGTGCA TTGAGTTGAACGGGG TM1040_3786 35844 - 36596 + | hypothetical protein TM1040_3787 37380 - 37024 - | nucleic acid binding, OB-fold, tRNA/helicase-type TM1040_3788 37746 - 38255 + | hypothetical protein TM1040_3789 38357 - 38752 + | SNase-like nuclease TM1040_3791 39882 - 40088 + | hypothetical protein TERM 48 40099 - 40141 + F 100 -23.4 -3.02511 | opp_overlap 40090 ACTGAATCCTCTGAC GAGGATGGGCCGCCCCAGGA CGA TCTTGGGGCGGCCCGACCCC TGTTCCAGGGATGCC TERM 49 40302 - 40314 + F 71 -4.7 -4.56597 | CAAAAACCTATCGGC CAGGG CCT CCCGG TTTTTGCGGCAGAGA TM1040_3792 40650 - 41243 + | hypothetical protein TM1040_3793 41230 - 43440 + | relaxase/mobilization nuclease domain-containing protein TERM 50 43888 - 43842 - g 71 -7.8 -4.07568 | TTCGTCTGCTCAAAA GTCTTCCCGCACGCGCTGATCG TGG CCCCCACCGGGCGCGGCAAGAC CACGGGCTTCGTCAT TM1040_3794 43437 - 45443 + | TRAG protein TERM 51 45568 - 45540 - T 83 -11 -3.91412 | ACTACAGGTGAGAAA GTCGTTCGAGAG CGGAT CCCTCGAACGGC TCAAAGTGATCTGCC TM1040_3795 47667 - 45670 - | periplasmic sensor signal transduction histidine kinase TERM 52 47710 - 47689 - R 75 -2.3 -5.10154 | gap 1 ATCCAAAATTAAAAA CTGGT-TAGA GTG TCGATACCAG TCCCATTCCTAAGAG TERM 53 47832 - 47861 + r 100 -16.5 -3.83026 | gap 1, opp_overlap 47832, overlap 47859 TGCTCTCATCAAGAA GAGGCCCC-TCCCG CAG TGGGAAGGGGCCTC TTTGGTATGCGCCAC TERM 54 47861 - 47832 - R 100 -17.2 -3.71848 | opp_overlap 47832 47859 TGCTCTCATCAAGAA GAGGCCCCTCCC GCAGTG GGAAGGGGCCTC TTTGGTATGCGCCAC TM1040_3796 48452 - 47907 - | hypothetical protein TERM 55 49117 - 49155 + H 77 -8 -4.28111 | opp_overlap 49117 TGCAAAGATCTCAAA TCCTGATTGAACGATGGC CTA GCCCCCGTTCGTACAGGA TTTCTTGCTGATGTG TERM 56 49264 - 49252 - H 83 -9.1 -4.63048 | opp_overlap 49258 49260 GCTACAAAGAAGAAA CGAGG CCG CCTCG CGTCAAGGTGATCTT TM1040_3797 49911 - 51461 + | hypothetical protein TERM 57 52212 - 52178 - g 77 -3.5 -4.89063 | gap 2 GCACCGAAAAACAAA GCGCGCCC-GA-ATCCG CTG CGGACACCCAGGAGCGC AGCACCGGTAATGGC TM1040_3798 52027 - 52281 + | hypothetical protein TM1040_3799 52469 - 53038 + | hypothetical protein TM1040_3800 53072 - 54244 + | hypothetical protein TM1040_3801 54278 - 54745 + | hypothetical protein TERM 58 55246 - 55263 + G 84 -9.8 -4.17316 | opp_overlap 55244 GGCGCCCAAGATACC CGCGGC CCGATT GCCGCG TTCTTTTCCCAGGAT TM1040_3802 54757 - 55578 + | hypothetical protein TERM 59 55697 - 55711 + G 70 -10 -3.48276 | overlap 55686 CTTACCTGCACTGCG GGCACT GCA AGTGCC TTGTGTGAGGACGCG TM1040_3803 55589 - 56197 + | hypothetical protein TERM 60 56213 - 56225 + G 80 -4.1 -5.12707 | GCAGGCTCATGCGTT CGAAG TTG CTTTG TTTTTTGGCCTTTGC TM1040_3804 56206 - 56622 + | hypothetical protein TM1040_3805 56625 - 57533 + | hypothetical protein TM1040_3806 57539 - 58570 + | hypothetical protein TERM 61 58997 - 59011 + G 76 -5.6 -4.58395 | overlap 58999 GATCGCGTGTTGATG CTTGGC CAG GCCACG TTTTTCGAAGATGCG TM1040_3807 58658 - 59440 + | hypothetical protein TERM 62 59470 - 59510 + F 75 -6.3 -4.64334 | gap 2, overlap 59471 CCAGCGGTAGTATAT TGGTCATGAAAGGCCCTGC TTTCT GC-GTGCCTTTCAT-ACCG TTTTCTTGCGAGGTT TM1040_3808 59718 - 60518 + | LuxR family transcriptional regulator TM1040_3809 61748 - 60669 - | TrbL/VirB6 plasmid conjugal transfer protein TM1040_3810 62174 - 61761 - | hypothetical protein TM1040_3811 62365 - 62171 - | hypothetical protein TM1040_3812 63348 - 62362 - | type II secretion system protein E TM1040_3813 64732 - 63353 - | conjugation TrbI-like protein TM1040_3814 65424 - 64729 - | conjugal transfer protein TrbG/VirB9/CagX TM1040_3815 66080 - 65427 - | VirB8 TM1040_3816 66906 - 66097 - | hypothetical protein TERM 63 66714 - 66736 + g 71 -7.6 -4.10657 | GTGTGGCAAGCTGTT CGCGGAGCTG CGT CAGCTGCTCG TTTTGCAGGATCTCG TM1040_3817 68060 - 66906 - | lytic transglycosylase, catalytic TM1040_3818 68217 - 68050 - | hypothetical protein TM1040_3819 70589 - 68214 - | CagE, TrbE, VirB component of type IV transporter system TERM 64 70219 - 70229 + g 71 -6.8 -4.15044 | TTGTCGCGCAGGCCG CTGG TCT CCAG TTTCTTGCGCCAGAG TM1040_3820 70824 - 70579 - | type IV secretory pathway, VirB3-like TM1040_3821 71143 - 70850 - | VIRB2 type IV secretion TERM 65 71007 - 70969 - G 89 -11.6 -4.2717 | overlap 70958 ACCAGCTGAGGAAAA CGCCCAGCACGGCAAGCG TGG CGATCACCACGCCGAGCG GGCCGGTCAACGCAT TM1040_3822 71754 - 71140 - | lytic transglycosylase, catalytic TM1040_3823 72151 - 71798 - | hypothetical protein TM1040_3824 72319 - 72615 + | hypothetical protein TM1040_3825 72863 - 73168 + | hypothetical protein TM1040_3826 73161 - 73388 + | hypothetical protein TM1040_3827 73781 - 73530 - | hypothetical protein TM1040_3828 74475 - 73771 - | short-chain dehydrogenase/reductase SDR TM1040_3829 74574 - 75452 + | LysR family transcriptional regulator TM1040_3830 76341 - 75610 - | hypothetical protein TERM 66 76592 - 76604 + H 71 -9.1 -3.75153 | CAGATACGCGAGTTC GCTGC ACT GCAGC TTTGGGTTCAGCAAA TM1040_3832 76954 - 78234 + | glycosyl transferase, group 1 TM1040_3833 79729 - 78296 - | glycosyl transferase, group 1 TERM 67 79246 - 79256 + g 77 -8.2 -4.3898 | GCGCCACGTCTTCGA GCGG AAC CCGC TTTTGTACCGATGCT TM1040_3834 81131 - 79812 - | Type I secretion membrane fusion protein, HlyD TM1040_3835 82906 - 81194 - | Type I secretion system ATPase, PrtD TM1040_3836 83259 - 83615 + | hypothetical protein TERM 68 84215 - 84190 - T 87 -11.9 -4.15044 | opp_overlap 84209 84209 84212, overlap 84207 84208 CCCGCCTTGAACAAA TGCACCGCCTC AAAC AAGGCGATGCA CCACGGTGCATCAGT TM1040_3838 84423 - 84226 - | hypothetical protein TM1040_3839 85978 - 84443 - | methyltransferase type 11 TERM 69 86025 - 86004 - R 100 -13.7 -5.055 | TCAAGCTTTAAAAAA CCTGCCCCC TTTC GAGGGCAGG TCCACTGTAGTCAAG TM1040_3840 89351 - 86070 - | hemolysin-type calcium-binding region TERM 70 86874 - 86884 + g 81 -5.4 -4.72497 | GTTCGAAGCGATATT CAGA ACA TCTG TTTTATTGGTAGCTG TERM 71 89458 - 89469 + G 72 -2.2 -4.8622 | GGATACAGGCTTTTT GCTT CTAC AGGC TTTTTGCTTCGGGAG TM1040_3841 89417 - 89767 + | hypothetical protein TM1040_3842 90028 - 90330 + | XRE family transcriptional regulator TERM 72 90675 - 90690 + G 74 -3.2 -4.7261 | opp_overlap 90661 GCGCGGAGTGACCGA CGAAGG TGAC CCTTGG TTTGTTTTCGTAAAT TM1040_3843 90406 - 92100 + | hypothetical protein TM1040_3844 93592 - 92309 - | hypothetical protein TM1040_3845 96000 - 93592 - | glycosyl transferase, group 1 TM1040_3846 97055 - 96000 - | methyltransferase type 11 TM1040_3847 100117 - 97529 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 73 98032 - 97987 - G 84 -6.1 -4.93877 | gap 1, opp_overlap 97997 CCTGATCAAAGAAAA GCTCGGCAATCTGATTGAGAGA AAG CCCCTCAGCCAGTTTGTCG-GC CCAGAAATACAGCCC TERM 74 99730 - 99754 + g 71 -6.3 -4.37886 | opp_overlap 99724 99722 99721, overlap 99731 99732 CAGAAACGAGCTTGA TGGGGGCAGCA AGC TCCTGCCCCAG TTTTATGCCAAATAG TERM 75 100325 - 100307 - R 74 -11 -3.22114 | overlap 100305 TAGACCACACGAACA CCCTCAGT CGA ACCGAGGG CTGAGACACGATTCA TM1040_3848 102199 - 100442 - | ABC transporter related TM1040_3849 102607 - 102308 - | hypothetical protein TM1040_3850 103088 - 102774 - | hypothetical protein TERM 76 102982 - 102962 - G 76 -6.7 -4.46926 | TAGGGCAGCAGAAAA CGCATGTGC CCC GCGCTTGCG ACAGAGCAGAAACCG TERM 77 103713 - 103727 + G 70 -4.2 -4.57073 | GTATAGTGACGCTTT CCGC GGATAGA GCGG TTTTTGAAGAGCATA TM1040_3851 103394 - 103981 + | hypothetical protein TM1040_3852 104719 - 104093 - | hypothetical protein TERM 78 105116 - 105135 + r 74 -4.2 -4.80167 | gap 1, overlap 105119 TGCACTGCCGACAGT GAC-GCCGC TTT GAGGCTGTC TTTTAGTTTTTGATC TM1040_3853 105923 - 105732 - | hypothetical protein TERM 79 105806 - 105824 + g 81 -6 -4.82667 | GCAGGATCGCAGCTT CTTGCTGA AGT TGAGCAAG TTTTTGGTCTACTAG TM1040_3854 107140 - 106169 - | KpsF/GutQ family protein TERM 80 107240 - 107198 - H 100 -24.3 -3.53811 | opp_overlap 107213 107214 GGCACGGCCGGGAAA GGCCAGTGCCGCG-CGCCTGC CGG GC-GGCGGCGCAGCACTGGCC CCCAAGGCAGGCCTT TM1040_3855 107450 - 107809 + | hypothetical protein TM1040_3856 107815 - 109062 + | RNA polymerase ECF-subfamily sigma factor TERM 81 109536 - 109563 + G 76 -9 -4.05877 | opp_overlap 109536 CACATTTGGCAATAA CGCCGGCTTTGG CACG CCGGGGCAGGCG TTCTTTGATCTGGTC TM1040_3857 109117 - 109884 + | hypothetical protein TERM 82 109937 - 109897 - T 81 -14 -3.19389 | gap 2, opp_overlap 109890 TAATGTACCGACCAA CGGGCG--TCTCATGGCCCC AAT GGGGCCTTGAGCTGCGCCCG CGCCCTACCCTTCGG TM1040_3858 111195 - 109942 - | glycosyl transferase, group 1 TERM 83 110902 - 110888 - G 85 -3.5 -5.42862 | AGATCCTTAAAAAAA CTGAG CTCTC CCCAG CCGGTATGACCAAGA TERM 84 111197 - 111186 - G 81 -4.4 -4.87665 | TTTGATGCACAAAAA GGAT CTTC ATCC GCCCCGCCTCAGCCC TM1040_3859 112078 - 111206 - | glucose-1-phosphate thymidylyltransferase TERM 85 111764 - 111740 - G 80 -4.1 -5.03314 | CCCATGGCCAAAAAA GACGTTGTCGC CCA GCACCAGCGCC GAGGGCGCCCCCGCG TM1040_3860 112974 - 112075 - | dTDP-4-dehydrorhamnose reductase TERM 86 112426 - 112451 + g 70 -3.1 -4.60255 | gap 1, overlap 112430 CACCGACACCTGCGC CCGCGCGGC-CC CAA GGCGCAGCATGG TTTTTACAAAATTAT TM1040_3861 114038 - 112986 - | dTDP-glucose 4,6-dehydratase TM1040_3862 115220 - 114096 - | acyltransferase 3 TM1040_3863 115773 - 115225 - | dTDP-4-dehydrorhamnose 3,5-epimerase TM1040_3864 116963 - 116076 - | 2-keto-3-deoxygluconate kinase TM1040_3865 118360 - 116963 - | glucuronate isomerase TERM 87 118188 - 118214 + g 76 -8.8 -4.09685 | gap 1 CGCCACTTATAGTGA TCATGGGCGAG CCACAT CTCGCCCA-GA TTTTCCCACGTACGA TM1040_3866 119772 - 118357 - | fructuronate reductase TERM 88 119214 - 119233 + g 76 -12.1 -3.32268 | opp_overlap 119213 119204, overlap 119230 CAAACCCCAGCACAG CGGCGCG AGTGAG CGCGCCG TTATCCGGCTGATTG TM1040_3867 122123 - 119769 - | Alpha-glucosidase TM1040_3868 123424 - 122123 - | TRAP dicarboxylate transporter- DctM subunit TM1040_3869 123951 - 123436 - | tripartite ATP-independent periplasmic transporter DctQ TERM 89 123544 - 123532 - G 71 -5.5 -4.29396 | AATGACGCAGTAAAA CACGA TGA TCGCG CCCGCGAAGGGGATC TERM 90 124101 - 124081 - H 74 -6.9 -4.42464 | AATTTGTGAAATAAA TGTCATTTG GCG CAAATGTCA CAACCAATACTCAAG TM1040_3870 124211 - 125185 + | TRAP dicarboxylate transporter, DctP subunit TM1040_3871 125204 - 127015 + | Beta-glucuronidase TM1040_3872 127012 - 127743 + | GntR family transcriptional regulator TERM 91 128474 - 128530 + G 100 -15.8 -4.62069 | gap 1, opp_overlap 128484 AACGTGTAGTGCCTG TGGCGGAAGAGGTGGGCGTCAGGTTGG GGAT CCATCCAGACGACCCCCCCTTCC-CCA TTTTTGGCCTACCAC TM1040_3873 127810 - 128979 + | mannonate dehydratase TERM 92 129670 - 129650 - T 74 -12.6 -2.80354 | overlap 129649 129659 GACATTCATGCAAAG CGCAGCGA AGGGG TCGCTGCG AGCGCGAAAGGCTTC TM1040_3874 130435 - 129842 - | hypothetical protein TERM 93 129995 - 130005 + g 74 -5.4 -4.44448 | ACGAGCCGGGTCGTA TTGC ATT GCAA TTTCTTTCGCCTGCT TM1040_3875 130963 - 130436 - | hypothetical protein TERM 94 130872 - 130898 + g 78 -10.1 -3.92832 | TGATTGGGGCTTGTG CCTGCGATCCG GTCGG CGGACTGCAGG TTCTTTGCGCGCTTT SEQUENCE gi|99078009|ref|NC_008043.1| Silicibacter sp. TM1040 mega plasmid, complete sequence (length 821788) TM1040_3032 6 - 827 + | sulfate/tungstate ABC transporter periplasmic substrate-binding protein TM1040_3033 855 - 1769 + | excisionase/Xis, DNA-binding TM1040_3034 2594 - 1785 - | binding-protein-dependent transport systems inner membrane component TM1040_3035 3354 - 2587 - | ABC transporter related TERM 1 2684 - 2700 + g 73 -4.3 -4.70659 | overlap 2687 TCCACATCCGCATAG CCGCGCT CCG AGAGTGG TTTTTCGATCTCGAC TERM 2 3248 - 3218 - G 85 -5.3 -5.02476 | overlap 3222 3242 AGACCGCCCAAAAAA CGCAGGAGTGTGG ACTTG CCACAACCCGACG GGCCCACGAGGCAGA TERM 3 3366 - 3401 + r 77 -11.3 -3.60151 | gap 2, opp_overlap 3363 CCATGAGAATATGCC CTGTGCAGGGAGCGACG ATGC CGTCGCTCCC-G-ATAG TTCTCGTTTAGGCGC TM1040_3036 4425 - 3409 - | sulfonate ABC transporter, periplamic sulfonate-binding protein TM1040_3037 5145 - 4480 - | GntR family transcriptional regulator TERM 4 5099 - 5073 - G 73 -5.1 -4.67048 | gap 1, overlap 5075 GCACGCCAAAAGAAA TG-TCGCGCCGG ATCG CCGAAGCGAGCA TGGCAACAACCGTTT TM1040_3038 5407 - 6159 + | extracellular solute-binding protein TERM 5 6193 - 6209 + G 71 -6.5 -4.18401 | TCTGGAATACATGTG GGATCTG GTG CCGATCC TTTTGGGCTATGTGC TM1040_3039 6188 - 6838 + | amino acid ABC transporter permease TM1040_3040 6835 - 7581 + | ABC transporter related TERM 6 11007 - 11025 + G 76 -5.9 -4.66953 | overlap 11008 CTGCGCGGTCTCAGC CCTCGCG ACAAA CGCGAGA TTTTTGACCTGTTCC TM1040_3041 8058 - 11189 + | hemolysin-type calcium-binding region TM1040_3042 12154 - 11228 - | PfkB TERM 7 11844 - 11786 - G 75 -3 -5.0133 | gap 2, opp_overlap 11836 GATCCCGCCAAAAAA CAGGGC-CTCGACCTCGGC-GCCGAGCT TCGGC AGGTCCGCTACCGTGATCAGGCGCCCCG CAGTGTTCTCGTCGT TERM 8 12504 - 12487 - H 79 -9.9 -4.13767 | opp_overlap 12487 12489 GTGCGCATCGCAAAA TATGGGG AAAT CCCCATA TGTATCGTCCATGGA TERM 9 12618 - 12606 - H 81 -10.5 -4.07568 | opp_overlap 12612 12614 GGGCGCCCGCCAAAA GGGCG CAA CGCCC ATAACGGGCGTCTTC TERM 10 13076 - 13064 - g 71 -7.7 -4.08216 | TGACCCTGCGCAAAA CCATG CTG CATGG CACCCGTGTCGACAC TM1040_3043 12814 - 13383 + | hypothetical protein TM1040_3044 13418 - 14599 + | hypothetical protein TM1040_3045 14630 - 15097 + | hypothetical protein TM1040_3046 15109 - 15927 + | hypothetical protein TM1040_3047 15929 - 16912 + | hypothetical protein TM1040_3048 17483 - 16974 - | hypothetical protein TM1040_3049 19208 - 17544 - | twin-arginine translocation pathway signal TERM 11 18428 - 18378 - G 88 -6.6 -5.00616 | CGCCCCCGCAAAAAA GGCCGCAGGGTCCGCGCCGAAATC GAT GAACTCGACCCGGTCCATATAGCC GCCATTGCCCGCGTT TM1040_3050 20188 - 19304 - | taurine catabolism dioxygenase TauD/TfdA TM1040_3051 21609 - 20200 - | FAD linked oxidase-like TERM 12 20667 - 20646 - G 100 -10.1 -4.74504 | overlap 20649 AGGCGAATTCAAAAA CATGCGGCA GCTT TGCCGCCTG CCGCTCGGCATCACT TM1040_3052 22877 - 21606 - | amidohydrolase TERM 13 22113 - 22097 - G 70 -10.1 -3.48593 | CATGGCCGCAGAGAA CCGGTCC GCC GAACCGG GTGGCGAGAGCGGCG TM1040_3053 23665 - 22874 - | creatininase TERM 14 23075 - 23064 - G 71 -5.8 -4.38712 | opp_overlap 23054 GTCAGTCCGATAAAA CGGA ATTC TCCG GCCCAGTCTTCCATA TM1040_3054 24357 - 23662 - | glutamine amidotransferase TERM 15 24354 - 24342 - G 77 -7.7 -4.28994 | opp_overlap 24341 CATGACGTATCAAAA GCACA CGC TGTGC CATATTCTCCTCCTT TM1040_3055 24485 - 24871 + | endoribonuclease L-PSP TM1040_3056 25267 - 25025 - | hypothetical protein TERM 16 25137 - 25184 + g 93 -14.8 -3.89212 | gap 1, opp_overlap 25137 25134 CCTCTTACCAAAGCA TTGGACAG-GCGGTTGCGGCGCC AGA GGCGCCGTAACCGCGCGGGGCGA TTTGCTGTGTAAATC TM1040_3057 25712 - 25251 - | hypothetical protein TERM 17 25569 - 25586 + g 70 -3.3 -4.7173 | overlap 25549 25570 CCGCGCCGGGCTTTT CTGCTCG GGCG CGGGCAC TTTTTGCATCTCCTC TM1040_3058 26748 - 25759 - | beta-lactamase-like TERM 18 26469 - 26451 - G 70 -4.4 -4.57569 | overlap 26452 GCATGCGCGCAAAAA GCCACGCG GTG CGGGTGGT CACGAGTTCTGCGCC TM1040_3059 28514 - 26802 - | acyl-CoA dehydrogenase-like TM1040_3060 28710 - 29681 + | translation factor SUA5 TM1040_3061 29742 - 30509 + | phage SPO1 DNA polymerase-related protein TM1040_3062 30534 - 31142 + | metallophosphoesterase TM1040_3063 31142 - 31765 + | lysine exporter protein LysE/YggA TERM 19 32090 - 32072 - g 88 -6.6 -4.91852 | opp_overlap 32073, overlap 32073 TCTATGAAAAAGAAA TCGATGCC TTT GGCACCGT CTTTACCATCGTGTC TERM 20 32089 - 32073 - g 70 -10.1 -3.54027 | opp_overlap 32073, overlap 32072 CTATGAAAAAGAAAT CGATGCC TTT GGCACCG TCTTTACCATCGTGT TM1040_3064 31771 - 32313 + | molybdenum cofactor biosynthesis protein B TM1040_3065 32428 - 33891 + | secretion protein HlyD TERM 21 36266 - 36302 + GT 71 -8.9 -3.72576 | gap 3 CGCGCTCAGCCCAGA TCCG-GGTAGAGCT-GCC CGAA GGCGAGCTC-ACCGCGGA TTTCCTCGAGCGCAC TERM 22 36305 - 36340 + GT 91 -12.5 -4.04474 | AGCTCACCGCGGATT TCCTCGAGCGCACGC AGATGC GCGCGCCCTCGGGGA TTTATGTGCCGCTCT TM1040_3067 37790 - 37311 - | NUDIX hydrolase TM1040_3066 33952 - 37365 + | acriflavin resistance protein TM1040_3068 38652 - 37867 - | hypothetical protein TM1040_3069 38804 - 39424 + | hypothetical protein TERM 23 39562 - 39546 - f 75 -9.3 -4.10925 | ATATACCTGGCAAAA GGGGGGG CCT CCCGCCC GTCGGCATCGCATCA TERM 24 40518 - 40505 - g 78 -6.7 -4.59773 | CTGGATGCGGAAAAA TTGGC ACTG GCCAA ACCCGACGCCATCGT pyrB 39746 - 40705 + | aspartate carbamoyltransferase catalytic subunit TM1040_3071 40711 - 41244 + | hypothetical protein TM1040_3072 41351 - 42661 + | dihydroorotase TM1040_3073 42661 - 43269 + | acyl-phosphate glycerol-3-phosphate acyltransferase TERM 25 43296 - 43315 + F 100 -12.1 -4.78149 | opp_overlap 43295 43296 CCTGTTGATGCAAAG CCCCGCC CCTACC GGCGGGG TTTTTACGTTCTGCG TERM 26 43315 - 43296 - f 71 -12.1 -2.78679 | opp_overlap 43296, overlap 43295 CCTGTTGATGCAAAG CCCCGCC CCTACC GGCGGGG TTTTTACGTTCTGCG TERM 27 43328 - 43347 + F 73 -8.6 -4.16284 | gap 1 GGGTTTTTACGTTCT GCGCACTCA AAT TGAG-GCGC TTTGTTGCACAGTCT TM1040_3074 43540 - 44025 + | hypothetical protein TERM 28 44083 - 44058 - T 100 -20.5 -5.93252 | opp_overlap 44058 CTTAAAAACAAAAAA TGGGCGGCAGG AGAT CCTGCCGCCCA TTTTTGCGCGCGGGT TERM 29 44058 - 44083 + T 100 -20.5 -4.56775 | opp_overlap 44058 CTTAAAAACAAAAAA TGGGCGGCAGG AGAT CCTGCCGCCCA TTTTTGCGCGCGGGT TERM 30 44089 - 44124 + T 77 -9.6 -3.90922 | gap 1 CTGCCGCCCATTTTT GCGC-GCGGGTCCCG GAGGGAA CGGGCACCGCAGCGC TTATTTCCCGGCCAT TM1040_3075 44379 - 44125 - | hypothetical protein TERM 31 44520 - 44556 + r 100 -25.4 -3.60098 | opp_overlap 44528, overlap 44523 44528 44551 GCGAACCAGACCGCG CAAGAAAAGGGGCGCC CCAGC GGCGCCCCTTTTCTTG TTTCAAATAAGAACT TERM 32 44523 - 44553 + r 100 -21.3 -3.9392 | opp_overlap 44528, overlap 44520 44528 44551 AACCAGACCGCGCAA GAAAAGGGGCGCC CCAGC GGCGCCCCTTTTC TTGTTTCAAATAAGA TERM 33 44548 - 44528 - R 100 -15.4 -4.63932 | opp_overlap 44523 44520 44528 GACCGCGCAAGAAAA GGGGCGCC CCAGC GGCGCCCC TTTTCTTGTTTCAAA TERM 34 44528 - 44548 + r 100 -15.4 -5.00196 | opp_overlap 44528, overlap 44523 44520 GACCGCGCAAGAAAA GGGGCGCC CCAGC GGCGCCCC TTTTCTTGTTTCAAA TM1040_3076 45951 - 44581 - | glutamate--cysteine ligase TM1040_3077 46584 - 46057 - | hypothetical protein TM1040_3078 47450 - 46581 - | GCN5-related N-acetyltransferase TERM 35 46819 - 46796 - G 76 -13.2 -3.08996 | overlap 46753 CACGCCCACGCAACA TTGGCGGCGT ATAG ACACCGCCAA CCTGCACCGCCTCGT TM1040_3079 48190 - 47450 - | hypothetical protein TERM 36 48076 - 48064 - G 76 -6.9 -4.56597 | overlap 48066 CGCGCCCGTTAAAAA GCGCA ACC CGCGC GGCCACGGAGAGCCG ubiA 48203 - 49165 + | prenyltransferase TM1040_3081 49247 - 51208 + | OmpA/MotB TM1040_3082 51205 - 51525 + | hypothetical protein TM1040_3083 51515 - 51922 + | hypothetical protein TM1040_3084 52129 - 52830 + | phosphatidylserine decarboxylase TM1040_3085 52823 - 53590 + | CDP-diacylglycerol--serine O-phosphatidyltransferase TM1040_3086 53571 - 54212 + | phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase TERM 37 54241 - 54276 + F 86 -6.7 -5.03715 | overlap 54242 54244 GCCAAATCAGGATCG CATCGCCCGTGCCTT AGAACA AAGGCGCGGGCGTCA TTTTTTGCGCGTCAT TERM 38 54242 - 54275 + F 74 -10.2 -3.61506 | overlap 54241 54244 CCAAATCAGGATCGC ATCGCCCGTGCCTT AGAACA AAGGCGCGGGCGTC ATTTTTTGCGCGTCA TERM 39 54244 - 54273 + F 95 -17.2 -3.38056 | overlap 54242 54241 AAATCAGGATCGCAT CGCCCGTGCCTT AGAACA AAGGCGCGGGCG TCATTTTTTGCGCGT TM1040_3087 54543 - 55976 + | hypothetical protein lipB 56519 - 57196 + | lipoyltransferase TM1040_3089 57652 - 59874 + | multi-sensor signal transduction histidine kinase TERM 40 60005 - 60024 + G 76 -13.6 -3.01712 | overlap 60007 60009 ACCCTCGCGCAGATT GAGACCGC CTCG GCGGTCTC TCTTGGCGCAGCCAG TM1040_3090 59876 - 60520 + | heme oxygenase TM1040_3091 60682 - 61245 + | nitrogen-fixing NifU-like TERM 41 61295 - 61322 + F 100 -9.9 -5.60993 | gap 1, opp_overlap 61295 AACGCCTTTTAAGGA CCGGTCAGGAGC ACGAC GCTC-TGGCCGG TTTTTTTCTAGACGG TM1040_3092 61469 - 62116 + | peptidase M22, glycoprotease TERM 42 62394 - 62406 + G 73 -4.7 -4.65916 | opp_overlap 62380 62384 ACGCAGCGACACGCG GCGCC ACA GACGC TTTTCTTGAGGTCGC TM1040_3093 62120 - 62554 + | GCN5-related N-acetyltransferase TERM 43 63529 - 63502 - g 73 -10.6 -3.6106 | opp_overlap 63524 GCGAAGATCTCGAAA TCGGCAAGGTCA CCCT TGACCTCTCCGA CAACGGTGTTGGCTA TM1040_3094 62691 - 63686 + | basic membrane lipoprotein TERM 44 63702 - 63738 + F 77 -10.8 -3.70902 | gap 1, overlap 63704 63705 TCACAGTGATCCGCA CCTCTCTCCGCC-TGGG ACAT CCCGCGGCGGAGGGGTG TTTGCATATGGCCCG TERM 45 63704 - 63736 + F 78 -12 -3.43773 | gap 1, overlap 63702 63705 ACAGTGATCCGCACC TCTCTCCGCC-TGGG ACAT CCCGCGGCGGAGGGG TGTTTGCATATGGCC TERM 46 63705 - 63735 + F 75 -13.3 -2.65942 | gap 1, overlap 63704 63702 CAGTGATCCGCACCT CTCTCCGCC-TGGG ACAT CCCGCGGCGGAGGG GTGTTTGCATATGGC TERM 47 63745 - 63785 + F 75 -5.9 -4.62069 | overlap 63750 63774 63776 GGAGGGGTGTTTGCA TATGGCCCGGAGGTCGCGT TCC GCGTGCCCTCCGGGTTTGG TTTTTCCCGTCCCGG TERM 48 63750 - 63780 + F 100 -16.8 -4.32649 | overlap 63745 63774 63776 GGTGTTTGCATATGG CCCGGAGGTCGCGT TCC GCGTGCCCTCCGGG TTTGGTTTTTCCCGT TERM 49 63846 - 63825 - f 77 -7.2 -4.45399 | ACATGAACATGAAAA CCACGCGT TTGCGC ACGCGGGG ACCGGCGATGAGATG TM1040_3095 63876 - 65405 + | ABC transporter related TM1040_3096 65406 - 66500 + | inner-membrane translocator TERM 50 66630 - 66643 + G 72 -2.3 -4.85599 | overlap 66631 GCCTTGAGGGCAAGA TGCTG ATGG CGGCG TTTTTCTCCGCTGCG TM1040_3097 66500 - 67507 + | inner-membrane translocator TERM 51 67548 - 67578 + F 100 -17.7 -5.07567 | gap 1 TCAGTCATCCTGTAG CACCCCCGC-CTCA GTCC TGAGCGCGGGGGTG TTTTTTCGGCTCTGG TERM 52 67804 - 67827 + G 80 -3.8 -5.05116 | overlap 67802 GCATGTTTGGGGTCG GCGGCG GGTTCCTTCTGA CGCCGC TTTTGTTCTTTATCG TERM 53 68155 - 68127 - g 80 -11.7 -3.84451 | gap 1, opp_overlap 68146 68149 CTGCGCAAATCCAAA CGC-GGCGGCGC GCCCAA ACGCCGCCAGCG CGGCTGGGTTCATAG TM1040_3098 67629 - 68621 + | hypothetical protein TM1040_3099 68621 - 69388 + | hypothetical protein TERM 54 69420 - 69400 - T 74 -11.8 -3.06183 | CTGAGGCGGACGCAA CCGCGCCG CGCGT CAGCGCGG CGCCCGGCCCAACCA TERM 55 69486 - 69467 - T 74 -12.8 -2.75963 | overlap 69466 AGGCGCAGGGCAAAT GGGCGGGA GCCT CCCCGCCC CGGATTCACACCAGA TM1040_3100 70241 - 69504 - | short-chain dehydrogenase/reductase SDR TM1040_3101 71791 - 70238 - | ATPase TERM 56 70672 - 70655 - G 80 -10.5 -4.09864 | opp_overlap 70670 ATGCAGGCGCGAAAA CCCAGGC TTGC GCCCGGG ACCGAGGTAGATGAC TERM 57 71497 - 71528 + g 81 -7.9 -4.61231 | overlap 71476 71473 71472 71499 CGGCCTTGTTGGTTG GTGCGAGGATCGC CAGCGT GCGTTTCTCGCCC TTTTTGCGGCTCTCG TERM 58 71857 - 71884 + r 74 -11.2 -3.31144 | AATCAGCCCCATTGT CACCGCGCGCGC CACC GCATGCGTGGTG TTCTGAGCCTGCAAC TM1040_3102 72552 - 71833 - | LuxR family transcriptional regulator TERM 59 72505 - 72477 - G 73 -10.3 -3.63569 | opp_overlap 72477 72476 GGAACTGGGCAAGAA CTTCGCCAATCTC CTC GAGATTTGCGGAG CTTTCGATCAACTCA TERM 60 72962 - 72942 - g 76 -9 -4.0896 | opp_overlap 72957 72960, overlap 72957 AAAGGGGGGGCAAAA CGGGCGTT AAAAA AACACCCG CCCCGAAAGGCGGAT TERM 61 72978 - 72957 - g 100 -10.1 -5.40072 | opp_overlap 72957 72960, overlap 72942 CGGGCGTTAAAAAAA CACCCGCCC CGAA AGGCGGATG TTTCAGTCAGGAAGC TM1040_3103 72590 - 73012 + | hypothetical protein TM1040_3104 74295 - 73015 - | crotonyl-CoA reductase TM1040_3105 75851 - 74421 - | glycerol-3-phosphate acyltransferase TERM 62 76929 - 76919 - g 75 -2.4 -5.0133 | overlap 76920 GACGCTTTCAAAAAA GGCC CGC GCCC GTGCGGTGCAGCTTC TM1040_3106 76029 - 78014 + | methylmalonyl-CoA mutase TERM 63 78076 - 78050 - f 71 -6.6 -4.3179 | opp_overlap 78071 CCAAAAAACGACAAA GATGCAAATTAG GTG CTGATCTGCACC GAGAATTGGGGCATT TM1040_3107 78144 - 78464 + | histone-like nucleoid-structuring protein H-NS TERM 64 78530 - 78510 - g 70 -4.7 -4.56775 | overlap 78513 ATTGGCTCTCAAAAA GATGATTTC GCC GAAACCGTC CTGCTTCCCGGCGAT TM1040_3108 78483 - 79187 + | purine-nucleoside phosphorylase TERM 65 79308 - 79282 - T 84 -10.1 -4.4017 | gap 1, opp_overlap 79282 GCAACGCCCACAAAA GGGCCGCTCCTC TTGC GAGG-GCGGTCC TTTTTGTTGGCCACG TERM 66 79282 - 79308 + T 100 -12.3 -5.06414 | gap 1, opp_overlap 79282 GCAACGCCCACAAAA GGGCCGCTCCTC TTGC GAGG-GCGGTCC TTTTTGTTGGCCACG TM1040_3109 80217 - 79360 - | hypothetical protein TERM 67 80289 - 80315 + r 95 -9.3 -5.24129 | opp_overlap 80288 80285 TGTCAAACAGATGAC CCGCGCCCAGA GAGCA TCCAGGCGCGG TTTTTTATCAAGCCA TM1040_3110 81519 - 80347 - | ornithine decarboxylase TERM 68 82022 - 82057 + r 87 -16.2 -3.2614 | opp_overlap 82033, overlap 82023 82033 AGGCACAATTCCTGA GAGCTGCGAAACGTCG GAAA CGACGTTTCGCAGCCA TTGATGTCCAAAGTC TERM 69 82023 - 82056 + r 95 -19.7 -2.5547 | opp_overlap 82033, overlap 82022 82033 GGCACAATTCCTGAG AGCTGCGAAACGTCG GAAA CGACGTTTCGCAGCC ATTGATGTCCAAAGT TM1040_3111 82963 - 82004 - | LysR family transcriptional regulator TM1040_3112 83029 - 84546 + | extracellular solute-binding protein TERM 70 84589 - 84555 - f 74 -10.7 -3.62476 | gap 1, opp_overlap 84548 GAAGTAACCACACAA GCCTGACCGGGCGC CTCTCTTT GCGTCCGGTC-GGC ATCCCTGCTTTCCTA TERM 71 85018 - 85046 + G 73 -8.8 -3.92075 | CGCTTTGCCTTGAGT TTCGGCACCGCC GCTCA GGCCGTTCCGAA TTTCTGGCTCGGGCT TERM 72 85287 - 85297 + G 75 -8.2 -4.1585 | overlap 85276 GTTCCGCCATGCGCT GCGC AAC GCGC TTTTGCCGGTTGTGA TM1040_3113 84619 - 85536 + | binding-protein-dependent transport systems inner membrane component TERM 73 85639 - 85629 - g 78 -4.6 -4.74103 | TCCGCAAGGCAAAAA GCCA CTT CGGC TTCAAGTTCGGCGCA TM1040_3114 85541 - 86449 + | binding-protein-dependent transport systems inner membrane component TM1040_3115 86470 - 88485 + | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 74 89127 - 89115 - g 70 -3.3 -4.61231 | GGATACCCGGAAAAA GCGAA CAA CCCGC TTCCTGCACTGGTCG TM1040_3116 88482 - 89669 + | succinyl-diaminopimelate desuccinylase TERM 75 90262 - 90284 + G 74 -4 -4.75174 | overlap 90272 90280 CATCAGCACGGGGTT TGCCTTCGAG GCC CCGGAGGGCA TTTTTCCCTTCAATG TM1040_3117 89666 - 90961 + | poly-gamma-glutamate biosynthesis protein TM1040_3118 91339 - 91971 + | phage integrase TERM 76 92002 - 91975 - f 88 -13.5 -3.78234 | opp_overlap 91974 91971 91970, overlap 91976 ATTGAAATTTAACAA CTTGGGCCGTC TTCAGG GACGGCCCAAA GCTGCCTTTCATTGA TERM 77 92001 - 91976 - f 81 -14.8 -2.86217 | opp_overlap 91974 91971 91970, overlap 91975 TTGAAATTTAACAAC TTGGGCCGTC TTCAGG GACGGCCCAA AGCTGCCTTTCATTG TERM 78 92040 - 92028 - f 71 -9.1 -3.7104 | ATTGATAGGTAACAA GCTGC GGC GCAGC ATCTGAAACCTCACA TM1040_3119 92141 - 92704 + | hypothetical protein TERM 79 93038 - 93018 - f 71 -11.9 -2.77962 | overlap 93022 CTTGACATGGGAAAC GAAAGCTGC GGT GCAGCTTCC CAAAAGCGGACAAAT TERM 80 93034 - 93022 - f 75 -9.1 -4.07647 | overlap 93018 ACATGGGAAACGAAA GCTGC GGT GCAGC TTCCCAAAAGCGGAC TM1040_3120 93112 - 93603 + | hypothetical protein TERM 81 93983 - 93965 - T 73 -8.8 -3.86897 | GGGACGTGGGACAAA GCGCCC TTCAATG GGGCGC ACTTCAAGGTCTAGT TM1040_3121 94586 - 93987 - | hypothetical protein TERM 82 94252 - 94268 + g 76 -9.5 -4.07562 | overlap 94255 CCGGAAAATGCGTTC CAAGTTG CAA CAACTTG TTTATCTGACATTTG TM1040_3122 96261 - 95143 - | hypothetical protein TM1040_3123 97101 - 96406 - | hypothetical protein TM1040_3124 99355 - 98105 - | hypothetical protein TERM 83 98239 - 98204 - G 71 -7.6 -4.03234 | gap 1 CTTTGTCCAGACAAA CCCGTCCGACTTTGAGA TAA TCGCAACGTCG-ACAGG GCCACCTACAGTCTC TERM 84 98907 - 98940 + g 71 -5.3 -4.386 | opp_overlap 98914 98917 TCACGAGAGTATCCG TCGAAGAGGAGGG GATAGTGA TCCGCTTCTTCGA TTTTCTCGGAGATTG TERM 85 99381 - 99391 + H 80 -5.4 -5.00616 | CAGTATCAAAAGTTC TTGC GAA GCAA TTTTTTCAGAGAGGG TM1040_3125 99835 - 100098 + | hypothetical protein TM1040_3126 101157 - 100360 - | integrase catalytic subunit TM1040_3127 101456 - 101190 - | transposase IS3/IS911 TM1040_3128 101920 - 102945 + | LacI family transcription regulator TERM 86 102970 - 102993 + T 100 -15.2 -5.90981 | opp_overlap 102970 ACACTCTAAAAAAAA CGCGCGACCC ATCT GGGCCGCGCG TTTTTTTTAATATGC TERM 87 102993 - 102970 - T 100 -17.4 -5.79526 | opp_overlap 102970 ACACTCTAAAAAAAA CGCGCGACCC ATCT GGGCCGCGCG TTTTTTTTAATATGC TM1040_3129 104521 - 103016 - | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 88 104050 - 104038 - G 74 -6.9 -4.34345 | CATAGATCACCAAAA CCACC GAG GGCGG GATCAGGATGCCCAA TM1040_3130 105138 - 104518 - | hypothetical protein TM1040_3131 106237 - 105191 - | TRAP dicarboxylate transporter- DctP subunit TM1040_3132 108480 - 106447 - | diguanylate cyclase/phosphodiesterase TERM 89 107105 - 107086 - G 84 -11.4 -4.02132 | opp_overlap 107085 107084, overlap 107100 107103 CGCCAAAGGCACAAA GCCTCCCG GCAA CAGGAGGC CCTTCTTGGGGTGTT TERM 90 110211 - 110200 - g 76 -5.8 -4.58283 | CAACCCCTGCAAAAA GCGT CCGA ACGC TACATGCGCAACCAT TM1040_3133 108763 - 110277 + | sulfatase TERM 91 110295 - 110280 - T 79 -6.8 -4.77165 | GCGCGGAGAATAAAA TCAGCC CTTC GGCCGA AACTGGTTGTGCAGT TERM 92 110395 - 110362 - T 95 -18.3 -3.53444 | gap 1, opp_overlap 110357 110387 TGACGGGGCTTTAAA CGGCAACAGGGATGCG CGA CGCATCCCTGT-ACCG TGACCTTGGGTATGG TM1040_3134 111265 - 110420 - | flagellin-like TERM 93 111642 - 111662 + H 78 -12.5 -3.28712 | overlap 111643 CTGCGCCCATACCTC TGCGGGCGC GCG GCGCCTGCG TTCTCCGGGCGCGGG TERM 94 111643 - 111661 + H 75 -13.8 -2.57132 | overlap 111642 TGCGCCCATACCTCT GCGGGCGC GCG GCGCCTGC GTTCTCCGGGCGCGG TM1040_3135 111923 - 112831 + | cytochrome-c peroxidase TERM 95 114191 - 114205 + G 73 -4.2 -4.58395 | opp_overlap 114191 ATTGGCCTGGACAAT GGCG AAATCAC CGCC TTTTTCCAGCCTCAG TM1040_3136 112844 - 114946 + | diguanylate cyclase/phosphodiesterase TM1040_3137 117006 - 114961 - | NADH:flavin oxidoreductase/NADH oxidase TERM 96 116308 - 116319 + g 76 -5.8 -4.60487 | CAGCCCTTCTTCTTC GGTG ATGC CACC TTTTTGCACCTCGTC TERM 97 116620 - 116608 - G 70 -10.5 -3.54741 | GACCAGTTTGGGAAA GGCGC GGT GCGCC GGCTCGCGATGCCGC TERM 98 117126 - 117160 + G 82 -12.1 -3.56568 | gap 1, overlap 117122 CACCTCCCCTCGCCC GCGCGGC-TCGCGCGA CCTC TGGCTCGATGCCGCGC TTGATCTTTTGGTCT TERM 99 117230 - 117240 + G 77 -8.2 -4.37067 | opp_overlap 117230 GCGCCGTGGATCAAA CCCG CAC CGGG TTTTACTGGTATTTC TM1040_3138 117100 - 117723 + | TetR family transcriptional regulator TERM 100 117751 - 117728 - T 100 -13.8 -5.4505 | opp_overlap 117728 CGCCGCAATAAAAAA CGGCAGGGTC ACTC GACCCAGCCG TTCTATTGTTAGCCT TERM 101 117728 - 117751 + T 88 -13.8 -3.8372 | opp_overlap 117728 CGCCGCAATAAAAAA CGGCAGGGTC ACTC GACCCAGCCG TTCTATTGTTAGCCT TM1040_3139 118725 - 117760 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TM1040_3140 119699 - 118725 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TM1040_3141 120640 - 119699 - | binding-protein-dependent transport systems inner membrane component TM1040_3142 121620 - 120640 - | binding-protein-dependent transport systems inner membrane component TERM 102 121663 - 121648 - R 74 -11.8 -3.14132 | opp_overlap 121645 121641 CTGTGGGTGGATGAA GGGGGC CGAA GCCCCC GTCTGCCTTGATGAG TM1040_3143 123258 - 121684 - | extracellular solute-binding protein TERM 103 123121 - 123109 - G 76 -6.9 -4.57073 | GACGTTGTTCAAAAA GCCCA GAA CGGGC GAGGAATTCACCGCA TM1040_3144 124948 - 123368 - | extracellular solute-binding protein TM1040_3145 125930 - 125313 - | hypothetical protein TM1040_3146 128207 - 125943 - | aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding TM1040_3147 128669 - 128211 - | (2Fe-2S)-binding TERM 104 128740 - 128728 - R 79 -9.1 -4.34402 | CCGCGCAGAGGAAAA CGCCA GAA TGGCG CTGACCTAAGGGAAC TM1040_3148 129972 - 128830 - | N-acetylglucosamine 6-phosphate deacetylase TM1040_3149 130997 - 129969 - | glutamine-fructose-6-phosphate transaminase (isomerizing) TERM 105 130083 - 130059 - G 82 -9.3 -4.40804 | overlap 130076 GACCATGCCATAAAA CGATACGATCG AGG CAATCGGATCG GTGATCCAGTGGTCC TM1040_3150 131827 - 131072 - | GntR family transcriptional regulator TM1040_3151 132701 - 131814 - | ATPase, BadF/BadG/BcrA/BcrD type TERM 106 132336 - 132324 - G 75 -2.6 -5.00616 | TTGCGCCGCAAAAAA CGAC CCGGT GCCG CAATGCGCGATCAGT TERM 107 133700 - 133676 - g 74 -4.1 -4.74504 | ACGGCAACGTAAAAA GCGCCATCC TGATTGC GGCGGGCGC ATCCGACCTCGCAGA murQ 132916 - 133797 + | N-acetylmuramic acid-6-phosphate etherase TM1040_3153 133822 - 135075 + | extracellular solute-binding protein TERM 108 135142 - 135111 - f 100 -19.5 -3.0263 | overlap 135100 ACCACTGTTGTAACA TCCCCGGACGCGC CACTCC GCGCGTCCGGGAA CTGGACCGGAGGTTC TERM 109 135181 - 135193 + G 78 -4.8 -4.83615 | AAGCCCCGCATCCGC TGGC ATATC GCCA TTTTTCTGGCCCCTG TM1040_3154 135160 - 136074 + | binding-protein-dependent transport systems inner membrane component TERM 110 136621 - 136608 - g 78 -2.3 -5.1101 | overlap 136609 TGATGACCTAAAAAA CGCTG GTCG CATCG ACGGGCTCAGTGAAT TM1040_3155 136087 - 136926 + | binding-protein-dependent transport systems inner membrane component TERM 111 137217 - 137186 - g 70 -4.3 -4.57353 | overlap 137187 CTCGAGGACACAAAA CCGGATCTGGTGG TCGTGG CCACCTACTCCGA CAGCCACGCCGACTA TM1040_3156 137006 - 138040 + | oxidoreductase-like TM1040_3157 138037 - 139032 + | ABC transporter related TERM 112 139055 - 139013 - f 81 -14.7 -3.05463 | opp_overlap 139041 139042 ACGTCTTTGACCCAA GCGGCGCGCGCCTCAGCTG ACCCA CAGGCGCGGCGCGGACCGC GCGGCCTTGTGGCCA TM1040_3158 139146 - 139754 + | TetR family transcriptional regulator TERM 113 140098 - 140083 - g 73 -9 -3.98282 | GCGATAGCAACGAAA CCGTCA GCAT TGACGG CGGGCCCTCCTATGT TERM 114 140696 - 140709 + G 70 -4.5 -4.56597 | CCACCTTGTCTTTGA TCGCC ACGA GGTGA TTTTTGCCGAAGGCG TM1040_3159 139953 - 140921 + | hypothetical protein TERM 115 140965 - 140943 - T 100 -14.1 -4.72272 | opp_overlap 140937 140943 CGCCGCCACCAAAAA GCCCCCGCC AATTG GGCGAGGGC TTTAAATTTCTTATT TERM 116 140943 - 140965 + T 85 -11.9 -3.95772 | opp_overlap 140943, overlap 140937 CGCCGCCACCAAAAA GCCCCCGCC AATTG GGCGAGGGC TTTAAATTTCTTATT TM1040_3160 141958 - 140996 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 117 141038 - 141058 + g 77 -11.1 -3.61654 | GTCGAGGAATTTCTG GCGCCGATC CTT GATCAGCGC TTTGGCGTCCATGTC TM1040_3161 142179 - 143012 + | AraC family transcriptional regulator TERM 118 143076 - 143040 - T 95 -13.6 -4.2349 | overlap 143041 TCGCGAGAGCGAAAA GGCGTGCAGGGGGCCC TCGAT GGGCGCTCTGCACGCT CCCCATCCACGCGAC TERM 119 143075 - 143041 - T 89 -17.1 -3.13773 | overlap 143040 CGCGAGAGCGAAAAG GCGTGCAGGGGGCCC TCGAT GGGCGCTCTGCACGC TCCCCATCCACGCGA TM1040_3162 143734 - 143129 - | lysine exporter protein LysE/YggA TERM 120 143603 - 143585 - G 71 -6.6 -4.24745 | overlap 143590 CACCATGAACACAAA GCCAAGCG CCA CGCCCAGC ATATGGGGAATGGTG TM1040_3163 143808 - 144260 + | AsnC family transcriptional regulator TERM 121 144633 - 144688 + F 100 -22.4 -4.18762 | gap 1, opp_overlap 144618 144617 TGCGCCGCGCTGCGC GCGCCGCCGCAGGGCCGGGGCCGCGCC TTC GGCGCGGCCCCGGCTTGGCC-CAACGC TTTTGGATCAGGCTT TM1040_3164 144824 - 145243 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 122 145228 - 145253 + T 70 -10.4 -3.25823 | opp_overlap 145229, overlap 145229 CTTGCGCTCCGATGA AGGGTTCGGC GTGTGA GCCGAACCCA TTCCTATCGGGGAAG TERM 123 145229 - 145252 + T 75 -13.9 -2.55351 | opp_overlap 145229, overlap 145228 TTGCGCTCCGATGAA GGGTTCGGC GTGTGA GCCGAACCC ATTCCTATCGGGGAA TERM 124 145252 - 145229 - T 78 -13.9 -3.14132 | opp_overlap 145229 145228 TTGCGCTCCGATGAA GGGTTCGGC GTGTGA GCCGAACCC ATTCCTATCGGGGAA TERM 125 145296 - 145280 - T 75 -13.7 -2.55 | opp_overlap 145273 145293, overlap 145270 GAAGAGCGCAAGGGA GCGAGGC TCT GCCTCGC GCTCCGGGATATTTT TM1040_3165 146330 - 145368 - | Citryl-CoA lyase TM1040_3166 146638 - 147639 + | hypothetical protein TERM 126 147644 - 147695 + F 87 -12.3 -4.08216 | gap 1, opp_overlap 147644 147646, overlap 147646 CCGCGGTCTGATTAA CATCTCTGGCCGGAGGCGTCTGTG GAGCG CGCAGGAGCCTCCGG-CGGGGATA TTTTCAAGAAGATGA TERM 127 147646 - 147693 + F 90 -14.9 -3.63922 | gap 1, opp_overlap 147644 147646, overlap 147644 GCGGTCTGATTAACA TCTCTGGCCGGAGGCGTCTGTG GAGCG CGCAGGAGCCTCCGG-CGGGGA TATTTTCAAGAAGAT TERM 128 148050 - 148035 - g 76 -6 -4.62069 | overlap 148037 TCTGGAGGCCAAAAA GGCCGG CAAG CCGGTC TGGGAATTGGCCGGT TM1040_3167 147745 - 148710 + | mandelate racemase/muconate lactonizing-like protein TM1040_3168 148721 - 149581 + | aminotransferase, class IV TERM 129 149609 - 149640 + T 73 -13.1 -2.62184 | opp_overlap 149614, overlap 149614 CCTGACGGAATTCTT CAAAAGGCCACCC TATGAC GGGTGGCCTTTTA TCATGTCAGCCGAAC TERM 130 149614 - 149635 + T 95 -13 -4.50976 | opp_overlap 149614, overlap 149609 CGGAATTCTTCAAAA GGCCACCC TATGAC GGGTGGCC TTTTATCATGTCAGC TERM 131 149635 - 149614 - T 91 -13 -4.11484 | opp_overlap 149614 149609 CGGAATTCTTCAAAA GGCCACCC TATGAC GGGTGGCC TTTTATCATGTCAGC TM1040_3169 150440 - 149646 - | extradiol ring-cleavage dioxygenase III subunit B TERM 132 150591 - 150569 - R 100 -13.4 -5.4833 | opp_overlap 150568 GCACGCAACAAAAAA CGCCCCGATC GCG AACCGGGGCG CTGTCTGCGGTCACG TM1040_3170 150957 - 150625 - | hypothetical protein TM1040_3171 151141 - 152124 + | K+-dependent Na+/Ca+ exchanger related-protein TM1040_3172 153709 - 152144 - | ASPIC/UnbV TERM 133 153471 - 153457 - G 81 -8.5 -4.64861 | opp_overlap 153430 CCGGCTGAAAAGAAA GCGCG CCGTC CGCGC CGGAGGTGTTGAGGA TM1040_3173 155003 - 153696 - | ROK domain-containing protein TM1040_3174 155096 - 156124 + | D-xylose ABC transporter, substrate-binding protein TM1040_3175 156210 - 157508 + | inner-membrane translocator TERM 134 157973 - 158011 + G 72 -11.7 -3.34398 | gap 1, overlap 157971 GTATCGGCGCTTTCG GGCGGCCAGCGGCAATCG GTGG CGATTGC-GCGGGCGGTC TATTTCAACGCCAAG TM1040_3176 157508 - 158299 + | ABC transporter related TERM 135 158375 - 158365 - f 76 -5.4 -4.76644 | AATACGCATCAAAAA CCAA TGT TTGG GGCGTGCGTGCCCGC TERM 136 159292 - 159304 + G 73 -10.5 -3.61983 | ACCGGGCTCCCGGAT GGCGC GAC GCGCC TTGTCTATCCGTTCA TERM 137 160528 - 160496 - g 71 -7 -4.16016 | gap 2 CGATGGTCGAAGAAA CCTCTGCAGCCGCCGT GAC ACTGCAGC-GC-GAGG CCGCCTCACTTGAAC TM1040_3177 158482 - 160731 + | methyl-accepting chemotaxis sensory transducer TERM 138 161465 - 161478 + G 71 -9.5 -3.71917 | AAGAAAACGATGCTT GCCGC TGCT GCGGC TTTGGCATTTCCCCT TERM 139 162035 - 162020 - g 74 -6 -4.56597 | GCTGCGCTTGAAAAA CGCGGC ATGA GCCTCG CGGCAGAAGGCACAT TM1040_3178 161441 - 162601 + | extracellular ligand-binding receptor TM1040_3179 162710 - 165367 + | methyl-accepting chemotaxis sensory transducer TERM 140 165430 - 165385 - T 85 -15.5 -3.1994 | gap 1, opp_overlap 165387 165391, overlap 165389 TACATCAGCCACTAA GTGAGATGCGCCACCCGGGC TGACCTC GCCCGGGTGGCGCATGTG-C TTTTCCCTAGGGGCT TERM 141 165387 - 165430 + T 100 -19 -4.18197 | gap 1, opp_overlap 165385 165389, overlap 165391 CATCAGCCACTAAGT G-AGATGCGCCACCCGGGC TGACCTC GCCCGGGTGGCGCATGTGC TTTTCCCTAGGGGCT TERM 142 165427 - 165389 - T 100 -21.8 -2.57244 | opp_overlap 165387 165391, overlap 165385 TCAGCCACTAAGTGA GATGCGCCACCCGGGC TGACCTC GCCCGGGTGGCGCATG TGCTTTTCCCTAGGG TERM 143 165391 - 165425 + T 100 -24.4 -3.11281 | opp_overlap 165389 165385, overlap 165387 AGCCACTAAGTGAGA TGCGCCACCCGGGC TGACCTC GCCCGGGTGGCGCA TGTGCTTTTCCCTAG TM1040_3180 165984 - 165490 - | hypothetical protein TERM 144 166105 - 166068 - R 70 -5.6 -4.37092 | gap 2, overlap 166069 AGCCCCCGGACAAAA GCGGTA-T-GACGCCTGC GGCG GCAGGCGTCGAGTGCCGA TAAATGCATATCGCG TM1040_3181 166966 - 166163 - | LuxR family transcriptional regulator TM1040_3182 168082 - 167108 - | hypothetical protein TERM 145 168077 - 168064 - G 78 -2.3 -5.08178 | opp_overlap 168064 ACAGAGAGAGAAAAA GCACC AAAA GCTGC TTCATGGATCGCCTC TERM 146 168138 - 168109 - R 86 -6.3 -5.03145 | overlap 168113 GAATTTCTGAAAAAA GGAAGGGAAGCGG AGAC CCGCTTCCCATGA CTGCAAAACAGAAGG TERM 147 168134 - 168113 - R 100 -15.9 -3.93166 | overlap 168109 TTCTGAAAAAAGGAA GGGAAGCGG AGAC CCGCTTCCC ATGACTGCAAAACAG TM1040_3183 169166 - 168159 - | hypothetical protein TERM 148 168310 - 168293 - G 79 -12.7 -3.51924 | opp_overlap 168291 168286 CGGCCAGGGACAGAA GCGCCTC GCCC GAGGCGC TCTGGGTTGCTGTCG TM1040_3184 170225 - 169278 - | hypothetical protein TERM 149 170134 - 170123 - G 74 -7.2 -4.36914 | opp_overlap 170123 TGCCGCCCCAGAAAA CCGC AGTT GCGG TGAGTTTTGCATAAA TERM 150 170174 - 170150 - G 86 -12.1 -3.86346 | TGAGTTTTGCATAAA GCGCCGCCG TGGGGAG CGGCAGCGC GGTATCGGGTGAGAA TM1040_3185 170270 - 171157 + | LysR family transcriptional regulator TM1040_3186 172082 - 171207 - | LysR family transcriptional regulator TERM 151 171418 - 171408 - G 78 -2.4 -5.07567 | overlap 171409 CGAGACCGGAAAAAA GGCG ATG CCCC CGCGTTTCCGGAGAT TM1040_3187 172197 - 172787 + | metal dependent phosphohydrolase TERM 152 173348 - 173324 - T 71 -8.5 -3.89182 | opp_overlap 173344, overlap 173318 173325 GAATAAGAACCCAAA GCTGCACTCGC GAA GCGAGTTCAGA CGGTGGCCGGAAGCG TERM 153 173347 - 173325 - T 73 -12 -2.92425 | opp_overlap 173344, overlap 173324 173318 AATAAGAACCCAAAG CTGCACTCGC GAA GCGAGTTCAG ACGGTGGCCGGAAGC TERM 154 174626 - 174639 + T 74 -4.5 -4.7254 | GTCGTCTTGCGACTT CGCAG AGCC CTGTG TTTTTAATAAACAGT TERM 155 175148 - 175103 - T 74 -10.3 -3.64703 | opp_overlap 175103 175106 175108, overlap 175106 CCCGCTTCATCGAAA GAACTGTTCCTCCAATGACCC CGAG GGGTCTAAGGAGGAGCTGTTC TATGTCACACTACGC TERM 156 175103 - 175148 + T 74 -12.5 -2.88544 | opp_overlap 175103 175106, overlap 175106 175108 CCCGCTTCATCGAAA GAACTGTTCCTCCAATGACCC CGAG GGGTCTAAGGAGGAGCTGTTC TATGTCACACTACGC TERM 157 175935 - 175952 + T 70 -11.3 -3.02043 | AGGAGTACTTAGCCT TCGGAGG TGGT CCTCCGA TCTTCAGACAGGATT TERM 158 176816 - 176874 + T 75 -12.5 -2.92442 | overlap 176817 CAAGCGATTGCCGCA GTGTCCGATTGGACGTTTGAACCACCC GCGCG GGGTGTCTCAAAGGTCTAATCGAACCC TCTGATCTATTGGAT TERM 159 177151 - 177170 + T 78 -6.4 -4.77165 | opp_overlap 177155, overlap 177140 177153 TGAGCTACCGACCCA GACAGACC GGTA GGTCTGTG TTTTGTTCTGAAGAG TERM 160 177153 - 177168 + T 73 -9 -4.00512 | opp_overlap 177155, overlap 177140 177151 AGCTACCGACCCAGA CAGACC GGTA GGTCTG TGTTTTGTTCTGAAG TERM 161 178179 - 178199 + T 70 -9.7 -3.53343 | overlap 178166 TAGTTTTGGAGGCAG TTCCAGGGT TGA GCCCTGGGA TTTCACCCCCAACTT TM1040_3188 180438 - 179563 - | LysR family transcriptional regulator TERM 162 180463 - 180484 + H 75 -9.5 -3.72576 | overlap 180440 TTCGCATGACTCGAG TGCGAAAGC ACGT GTTTTCGCA TTTGCTCCCACGCCC TM1040_3189 180535 - 180816 + | hypothetical protein TERM 163 181056 - 181026 - T 100 -20.5 -4.91109 | gap 1 TCCCCACCAGAAAAA GCGGGCGCGGAGCC ATAA GG-TCCGCGCCCGC CATCATCAAAGATAA TM1040_3190 183857 - 181083 - | formate dehydrogenase, alpha subunit TM1040_3191 185549 - 183861 - | NADH dehydrogenase (quinone) TM1040_3192 186469 - 185663 - | LysR family transcriptional regulator TERM 164 185939 - 185929 - G 70 -3.2 -4.61231 | CGAGATCGGCAAAAA TCCG GTC CAGA ATACGCCGGTTCTGC TM1040_3193 186865 - 187434 + | hypothetical protein TM1040_3194 187476 - 189320 + | methyl-accepting chemotaxis sensory transducer TERM 165 189336 - 189368 + F 81 -12.6 -3.55563 | gap 1, opp_overlap 189325 189326 CCAAGCTGTATTTTG GCGAGGCGCGCG-GC AATT GCACGCGCGCCCGGC TTTCCAAAATACACT TERM 166 189435 - 189451 + F 86 -10.8 -4.3208 | opp_overlap 189433 189434, overlap 189440 ACAGGACCTCAAAGC GCCCCC GCAAA GGGGGC TTTTGCGTTCTGGGG TERM 167 189440 - 189458 + F 70 -9.6 -3.38559 | opp_overlap 189433 189434, overlap 189435 ACCTCAAAGCGCCCC CGCAAAGG GGG CTTTTGCG TTCTGGGGTTGTCCT TERM 168 189529 - 189516 - f 83 -3.7 -5.28481 | CAGTCAAGTAAAAAA CCAGC TGAA GCAGG TCAATCCTCAAAGAA TM1040_3195 190067 - 191065 + | TRAP dicarboxylate transporter- DctP subunit TERM 169 191398 - 191419 + G 78 -2.9 -5.14563 | ATATGAAGAATGGTT GCTAGCGAT CAGC ATCGTGGGC TTTTTTGCTGGGGCA TM1040_3196 191222 - 191779 + | hypothetical protein TM1040_3197 191776 - 193065 + | TRAP dicarboxylate transporter- DctM subunit TERM 170 193772 - 193796 + G 83 -4.2 -5.05782 | opp_overlap 193763 193762, overlap 193763 CAACAGCCCGGTCTA CGGGTTTGCG ACGCG CGCGGATCTG TTTTTTGCGCTGCGT TM1040_3198 193350 - 194309 + | dihydrodipicolinate synthetase TERM 171 194355 - 194381 + G 100 -18 -4.03234 | GGGTCATCCTTGACG GCAGCCCCGATC TTG GATCGGGGCCGC TTTGTGTGCGGGCAG TM1040_3199 194300 - 195226 + | proline racemase TERM 172 195246 - 195261 + G 77 -11.8 -3.60814 | opp_overlap 195245 195241 CTCATACAAAGTCAT GGGGCC ACCC GGCCCC TTATCTGTACCATTT TM1040_3200 195244 - 196530 + | D-amino acid dehydrogenase small subunit TM1040_3201 196546 - 197571 + | proline racemase TERM 173 197664 - 197636 - T 71 -7.4 -4.11394 | gap 1 AGGTTATTGGGAAAA GCGCCAGTCGCGA CACT CCGTGACTG-CGC TAAAGCCAAGGCATT TERM 174 197948 - 197890 - T 74 -10.3 -3.67296 | gap 2, overlap 197894 CATGACCCATGCAAA GCAATCGGCCCTGCAGCATCCCCCTTGGT ACA ACCC-GGAGCATGCTGCAAGGCCGAA-GA ATCGAGAGCCGGACG TERM 175 197945 - 197894 - T 100 -21 -3.54676 | gap 1, overlap 197890 ACCCATGCAAAGCAA TCGGCCCTGCAGCATCCCCCTTGGT ACA ACCC-GGAGCATGCTGCAAGGCCGA AGAATCGAGAGCCGG TM1040_3202 198293 - 197964 - | hypothetical protein TM1040_3203 198681 - 198295 - | response regulator receiver protein TERM 176 198555 - 198565 + g 71 -6.8 -4.17048 | CAAGCTTCTGGAACG CGGA TTG TCCG TTGTTTTCGACGAGA TM1040_3204 199582 - 198725 - | MCP methyltransferase, CheR-type TERM 177 198835 - 198859 + g 89 -6.4 -5.13741 | gap 1 ACCCGCCTGGATTGA GTGTGCGCTGG AACG CCTGC-CACAC TTTTTGTTGGGTTGG TERM 178 199470 - 199443 - G 86 -12.2 -3.85817 | gap 1, opp_overlap 199449 AGCTTCCGCGACAAA CGAG-AAGAAACC AGA GGTTTCTTGCTCG CAGACATCGCCAAGC TM1040_3205 200067 - 199579 - | CheW protein TM1040_3206 202186 - 200051 - | CheA signal transduction histidine kinases TERM 179 200986 - 200998 + g 77 -3.3 -4.96848 | TCTCACCTTCCGTGA TCAGC TTG GCAGA TTTTTCTGTCGCCGA TM1040_3207 202562 - 202188 - | response regulator receiver protein TM1040_3208 202861 - 202559 - | hypothetical protein TERM 180 203249 - 203269 + G 76 -12.6 -3.41051 | CGTTTCTTGTGGGTT TCGCGCTG CTGGC CAGCGCGA TTCTGGTGACGGTGA TERM 181 205459 - 205436 - g 70 -10.2 -3.55563 | opp_overlap 205456 ACCGCAGGCCCGAAA CGCCGCGAGC CTCG GCTCATGGCG AAGACATCGCCTTTG TM1040_3209 203191 - 205539 + | methyl-accepting chemotaxis sensory transducer TM1040_3210 205699 - 206634 + | CheB methylesterase TERM 182 206924 - 206910 - g 71 -7.1 -4.2704 | GGCATCATGAAGAAA GGAGC TCTGC GCTCC AACCTCAAGGCCAAG TM1040_3211 206661 - 207224 + | CheD, stimulates methylation of MCP proteins TERM 183 207290 - 207261 - f 76 -13.6 -2.74756 | opp_overlap 207261 207262, overlap 207249 AAACGACTTCAACCA GCCCCTTGGGTG CTTCGT CACCCAAGGGGT CTTTTGCGTCCGCTC TERM 184 207261 - 207291 + F 95 -13.4 -4.19258 | gap 1, opp_overlap 207249 207261, overlap 207262 AAACGACTTCAACCA G-CCCCTTGGGTG CTTCGT CACCCAAGGGGTC TTTTGCGTCCGCTCT TERM 185 207262 - 207289 + F 100 -17.1 -3.69483 | opp_overlap 207261 207249, overlap 207261 AACGACTTCAACCAG CCCCTTGGGTG CTTCGT CACCCAAGGGG TCTTTTGCGTCCGCT TM1040_3212 207380 - 208021 + | TetR family transcriptional regulator TERM 186 209072 - 209053 - g 87 -10.6 -4.37886 | overlap 209054 TGAGCGTGCAGAAAA GGCGCGCC TTGC GGCGCGCG CCGAAATCGAAGCGC TERM 187 209071 - 209054 - g 78 -14.1 -3.2241 | overlap 209053 GAGCGTGCAGAAAAG GCGCGCC TTGC GGCGCGC GCCGAAATCGAAGCG TM1040_3213 208049 - 209620 + | hypothetical protein TM1040_3214 210435 - 209629 - | binding-protein-dependent transport systems inner membrane component TM1040_3215 211307 - 210432 - | binding-protein-dependent transport systems inner membrane component TERM 188 211225 - 211201 - G 75 -2.1 -5.00616 | gap 1 GGCGTCGTGAAAAAA CTGCTC-CAC AAGGTA GTGAGCGCAG GCAGATGGGTAAAGG TERM 189 211357 - 211328 - R 80 -14.2 -3.00946 | overlap 211325 CGTCTCCAGAAATGA GGCGCGCCACCC GAGGTG GGGCCGCGCGCC GATCGTAAACTTAAC TM1040_3216 212645 - 211368 - | extracellular solute-binding protein TERM 190 211743 - 211757 + g 71 -7 -4.15044 | overlap 211741 ATTGCCACCGCCGGT CGGCGC TCC GCGACG TTTGTTGGCGGGCAG TERM 191 212138 - 212158 + g 73 -10.3 -3.57144 | CCATCTCGACCATCT CGTCCCAGG TCG CCGGGGGCG TTTCAGGATCGAGAC TM1040_3217 213834 - 212764 - | ABC transporter related TERM 192 213143 - 213121 - G 82 -11.9 -3.91897 | opp_overlap 213121 213136, overlap 213096 CGGGTTACCGATAAA CCGCGCCGC AAAGG GCGTCGCGG GACGGTTGTAGATCT TERM 193 214043 - 214006 - R 95 -19.3 -2.68823 | gap 1, opp_overlap 214012 214041 214042, overlap 214012 214026 CGCGCCCGACACAAT GGAAAACGCCGCG-CCCA ACA TGGGACGCGGCGTTTTGC CTCGTGCCTTGCGCG TERM 194 214012 - 214037 + r 100 -16.9 -4.21462 | gap 1, opp_overlap 214006 214012 214026 CGACACAATGGAAAA CGCCGCG-CCCA ACA TGGGACGCGGCG TTTTGCCTCGTGCCT TERM 195 214037 - 214012 - R 100 -16.9 -4.34267 | gap 1, opp_overlap 214012, overlap 214006 214026 CGACACAATGGAAAA CGCCGCG-CCCA ACA TGGGACGCGGCG TTTTGCCTCGTGCCT TERM 196 214041 - 214063 + r 77 -11.2 -3.59698 | opp_overlap 214006 214026, overlap 214042 TGGGACGCGGCGTTT TGCCTCGTGC CTT GCGCGAGGCC TTATATGTCGACTGC TERM 197 214042 - 214062 + r 79 -14.7 -2.75498 | opp_overlap 214006 214026, overlap 214041 GGGACGCGGCGTTTT GCCTCGTGC CTT GCGCGAGGC CTTATATGTCGACTG TM1040_3218 215131 - 214064 - | ferredoxin TM1040_3219 216363 - 215137 - | Rieske (2Fe-2S) region TERM 198 215808 - 215822 + g 76 -10 -3.72695 | GCTTCCAGTTGCCGC GCTCCA CGA TGGAGC TTTCATGGGCGACCT TERM 199 216228 - 216246 + g 73 -8.9 -3.87373 | overlap 216231 216245 CCAGCTCGCAGGCGG GAATGGC AAAAA GCCATTC TTTGTAAAAGATCTC TERM 200 217184 - 217167 - g 81 -7.7 -4.58395 | gap 1 TGGACTGTCCAAAAA CCG-CGAG AAC CTCGACGG GATCTCGATTGGCGC TM1040_3220 216964 - 217980 + | TRAP dicarboxylate transporter- DctP subunit TERM 201 218008 - 218029 + F 95 -17.3 -3.41125 | GGCCTATGGCCTATG GCCCGGACC AATT GGTCCGGGC TTCTGCGTATCTCAC TERM 202 218393 - 218415 + G 78 -4.8 -4.7629 | CATCCTCGTGGGGCG GCTAAAGGGT CGC GCGCTTTGGC TTTTTGAATTCATCA TM1040_3221 218070 - 218747 + | tripartite ATP-independent periplasmic transporter DctQ TERM 203 219077 - 219088 + G 74 -5.8 -4.56597 | TGCCCGGGGGCCTTG CGGT ATCC ACCG TTTTTGCCACCGCAG TM1040_3222 218740 - 220140 + | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 204 220446 - 220471 + T 74 -10.5 -3.54935 | gap 1, opp_overlap 220446 GAAGCGCTCAACGAA TTCTGACTGCGC GAT GCGCAG-CAGGA TTTACGGCCACTTTC TERM 205 220717 - 220689 - T 100 -16.1 -3.73072 | opp_overlap 220682, overlap 220690 AATGCTGTGATCAAA CGGGGTAGAGAGT ATC ACTCCCTACCCCA ATTGAGATCAGTTCG TERM 206 220716 - 220690 - T 87 -17.4 -2.83522 | opp_overlap 220682, overlap 220689 ATGCTGTGATCAAAC GGGGTAGAGAGT ATC ACTCCCTACCCC AATTGAGATCAGTTC TM1040_3223 221492 - 220725 - | putative ABC transporter, periplasmic substrate-binding TM1040_3224 222574 - 221636 - | hypothetical protein TERM 207 222532 - 222555 + g 89 -10.3 -4.50661 | opp_overlap 222525 222523, overlap 222534 CACCAATACGCCCTG TTCTCGCCC CGAAGA GGGCGAGGA TTTTGCTTATGAATT TM1040_3225 224017 - 222584 - | von Willebrand factor, type A TM1040_3226 224833 - 224021 - | hypothetical protein TERM 208 224659 - 224679 + g 74 -11.1 -3.53012 | CAAGCACATGATCCG CTCGTGGCG CAG CGCCATGGG TTTGGGCCCGCAGGG TERM 209 224809 - 224782 - G 81 -7.6 -4.60041 | overlap 224783 224787 ACTCAGCTGCAAAAA CCGAAGCTGGCA AGAG CGCCAGCCCCGC AGTGAAACCCAAAAC TERM 210 224808 - 224783 - G 72 -11.1 -3.35542 | overlap 224782 224787 CTCAGCTGCAAAAAC CGAAGCTGGCA AGAG CGCCAGCCCCG CAGTGAAACCCAAAA TM1040_3227 224962 - 226599 + | LuxR family transcriptional regulator TM1040_3228 227544 - 226645 - | AraC family transcriptional regulator TERM 211 227131 - 227117 - G 74 -5.6 -4.45117 | GACACGTTAAACAAA CGGTGC GTG GCATCG ATCAACGCGGCATCG TERM 212 227519 - 227530 + g 73 -4.4 -4.67011 | opp_overlap 227519 ACCAGATCAAACACA TCTG AGAT CAGA TTTTTAGGTACCATT TM1040_3229 227859 - 228323 + | (2Fe-2S)-binding TERM 213 228386 - 228366 - g 80 -10.3 -4.07568 | opp_overlap 228366 228368 228373 GTGGGTTTCTGAAAA CCGCAGCCG CCG CGGGCGCGG TGCTTTATGTTGGGG TERM 214 228368 - 228389 + G 71 -6.5 -4.1891 | gap 1, opp_overlap 228366, overlap 228366 228373 GGGTTTCTGAAAACC GCAGC-CGCC GCG GGCGCGGTGC TTTATGTTGGGGCCA TERM 215 228610 - 228623 + G 75 -2.4 -4.96388 | overlap 228597 CCCCTCCGACCCGCA GGTT TACAAC AACC TTTTGTTTGGTCCTT TERM 216 229022 - 229001 - g 85 -12.3 -3.78775 | gap 1 GTCGTCATGATCAAA CGCACGCCAC AGC GTGGCG-GCG TGGTGGCCGGATTTG TERM 217 230219 - 230203 - g 85 -12.3 -3.74693 | CGGCATTGCAGTAAA CCCGGAT GTC ATCCGGG CCCAGACCGAAGGCG TM1040_3230 228329 - 230506 + | twin-arginine translocation pathway signal TERM 218 230513 - 230545 + T 85 -14.3 -3.53012 | opp_overlap 230511 230515 230533 TTCGCCTAAGTCACA GATGCACCGCAAT CATCCAA GTTGCGGTGCATC TTTCACGCCCACCGG TM1040_3231 233225 - 230751 - | periplasmic sensor hybrid histidine kinase TM1040_3232 233956 - 233222 - | two component transcriptional regulator TERM 219 233491 - 233510 + g 71 -7.8 -4.07885 | TGTCCAGAAGTCGTC GCGCATCG AGGT CGATCCGC TTTTCGCCAAAGGTG TERM 220 234345 - 234383 + G 70 -3.1 -4.65895 | overlap 234364 TCGTCGCCGACACGC CGACCG-ATCCGGCAGAGC TGA GCGAT-CCGGATACGCTCG TTTTTGCCTACACCC TM1040_3233 234200 - 235180 + | phosphonate-binding periplasmic protein TM1040_3234 235287 - 236060 + | phosphonate ABC transporter ATP-binding TERM 221 236440 - 236458 + G 73 -9.6 -3.86015 | GCGCAGTTTCCACCC GGTGATCG TGG CGATCATC TTTGTCAAAGCCGTA TM1040_3235 236057 - 236863 + | phosphonate ABC transporter permease TERM 222 237030 - 237055 + G 74 -5.3 -4.57569 | gap 1 CTGGGCCTGGGTCTG GGACTCGCCAGC GCA GATGGCG-GACC TTTTTGGACGCATGA TERM 223 237407 - 237389 - g 76 -10.3 -3.76968 | overlap 237393 AAGCGATCGAGGAAA TCGACCG CAAAC CGGTCGA AGCGCTCGAGGCCTG TM1040_3236 236860 - 237690 + | phosphonate ABC transporter permease TM1040_3237 238554 - 237883 - | DSBA oxidoreductase TERM 224 238625 - 238574 - R 71 -9.4 -3.76568 | gap 1, opp_overlap 238576 TCACCTATAAGAGAA GTCGCGAGGTGCGATTGCAGGCGAT GAA AGCGCCCGCAATCGCAGAT-GCATC AATTTCCAGTCAGTG TM1040_3238 239436 - 238624 - | hypothetical protein TERM 225 239460 - 239477 + r 77 -9.8 -3.92625 | TCTCCAGTTCAGTAT CCGGGG AAGCGG CCCCGG TTTGGTTGCGGTGTA TM1040_3239 240455 - 239499 - | putative glutathione S-transferase TERM 226 239998 - 239986 - G 70 -4.7 -4.56597 | overlap 239987 TCGGGCGGGTAAAAA TCCGG TGC CCGGT AGGTAAACTCATCGA TM1040_3240 240577 - 241494 + | LysR family transcriptional regulator TERM 227 241984 - 241936 - f 71 -4.3 -4.57569 | overlap 241903 TGAGCCTCGCAAAAA GGTGCGATTGGGACGCGCAGGCC CAC GGCATTCCCACCAGAGTCGCACC AGAGATATTTGCCCG TM1040_3241 242356 - 242763 + | hypothetical protein TERM 228 245843 - 245793 - g 70 -4.9 -4.49353 | gap 2, overlap 245796 GCACAACAGAAGAAA TCAGTGC-ATCGA-TCGAAGAAC TGAGTGC GTCCATCGACTCGATCGCACAGA ACTCCAAACATTCTG TM1040_3242 243791 - 246433 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 229 246580 - 246550 - g 100 -18.4 -4.07885 | overlap 246570 CACGGTCGCTGAAAA CCGCAAGGGGCTTT TGG AAAGCCGCTTGCGG GGGCGGCTCCGGGAA TM1040_3243 246458 - 247288 + | MCP methyltransferase, CheR-type TM1040_3244 247293 - 247832 + | CheD, stimulates methylation of MCP proteins TM1040_3245 247832 - 249418 + | CheW protein TERM 230 249553 - 249564 + F 86 -7.2 -4.93316 | CGCAAGACAATTGTT CCGC CATA GCGG TTTTTGATGTTCTTG TM1040_3246 249743 - 250009 + | transposase IS3/IS911 TM1040_3247 250042 - 250839 + | integrase catalytic subunit TM1040_3248 250950 - 251117 + | transposase and inactivated derivative TM1040_3249 251153 - 251410 + | transposase orfB TERM 231 251622 - 251611 - T 86 -7.2 -4.89233 | opp_overlap 251610 CACGAACATCAAAAA CCGC TATG GCGG ATCAATTGTCTTGCG TERM 232 251731 - 251704 - T 77 -10.4 -3.72695 | opp_overlap 251704 ACGCTCCGCATCAAA CGCGCGCCACGC ATCA GTGCTGCGCGCG TTTGCACCTGTCCAA TERM 233 251704 - 251731 + T 74 -10.4 -3.59262 | opp_overlap 251704 ACGCTCCGCATCAAA CGCGCGCCACGC ATCA GTGCTGCGCGCG TTTGCACCTGTCCAA TM1040_3250 252285 - 251761 - | signal-transduction protein TERM 234 252100 - 252078 - G 71 -6.9 -4.25104 | opp_overlap 252092, overlap 252043 CGTTTTTCACCAAAA GCGCGCCAA TTCCC CTGTCGCGC AGAACCTCCACGGCC TM1040_3251 252364 - 252546 + | hypothetical protein TERM 235 252580 - 252546 - T 77 -12.1 -3.281 | overlap 252544 GCTCAAGGCACAATA GACGCGCAGACGCCC TTGGC AGACCTCTGCGCGCC CGAGCCATTGTCGGC TM1040_3252 253611 - 252601 - | inner-membrane translocator TERM 236 253548 - 253537 - G 85 -7.2 -4.77036 | overlap 253539 CGCCAGCAGGAAAAA GGGG AGCA CCCC CACCCGGACAAAGAT TM1040_3253 255110 - 253608 - | ABC transporter related TERM 237 255160 - 255130 - R 100 -9.7 -5.00616 | TGTTCCTTGAAAAAA GCAGGCCGAGC GGGGAGAGG ACCCGGCCTGC AAAAGTGTCGCTTAT TM1040_3254 256242 - 255172 - | periplasmic sensory protein associated with the TorRS two-component regulatory system TM1040_3255 257305 - 256334 - | Urea carboxylase TM1040_3256 258170 - 257295 - | allophanate hydrolase subunit 1 TM1040_3257 259543 - 258167 - | acetyl-CoA carboxylase biotin carboxylase subunit TM1040_3258 259780 - 259547 - | hypothetical protein TERM 238 259688 - 259702 + g 77 -11.4 -3.66178 | overlap 259697 GATGACGTCCCCAAC GGCGAC CGC GTCGCC TTTGACCTTGAACGG TM1040_3259 260596 - 259817 - | hypothetical protein TM1040_3260 260876 - 261793 + | LysR family transcriptional regulator TM1040_3261 262362 - 261790 - | XRE family transcriptional regulator TERM 239 262248 - 262259 + g 70 -3.6 -4.63218 | overlap 262240 ATGAGATCGTCGAGT TCGG CACG CCGG TTTTCTTGGCCAACG TERM 240 262301 - 262348 + g 85 -15.4 -3.19442 | AGGTTGGCCTTTTCC CGCACGCTGCGCAGACGCGGGC CGAG GTCCTCGTCTGCGCCCTGAGCG TTAGATATGTTCACT TM1040_3262 262509 - 263786 + | 4-aminobutyrate aminotransferase TM1040_3263 263788 - 265257 + | succinate semialdehyde dehydrogenase TERM 241 265310 - 265275 - f 90 -8.2 -5.11112 | gap 1, overlap 265277 265278 265299 AAAGCGCAATAAAAA CAGGCCTGTGCGATGTC TAA GACAGCGCGCAGGCG-G ATCGCGATGGGATCA TERM 242 265309 - 265277 - f 87 -11.9 -4.16909 | overlap 265275 265278 265299 AGCGCAATAAAAACA GGCCTGTGCGATGTC TAA GACAGCGCGCAGGCG GATCGCGATGGGATC TERM 243 265308 - 265278 - f 83 -15.4 -3.09061 | overlap 265277 265275 265299 GCGCAATAAAAACAG GCCTGTGCGATGTC TAA GACAGCGCGCAGGC GGATCGCGATGGGAT TM1040_3264 265413 - 266627 + | ROK domain-containing protein TERM 244 267319 - 267290 - g 89 -10.7 -4.66953 | gap 1, opp_overlap 267290, overlap 267281 GGAACACCGGAAAAA GGCGTGGAT-GCGC TCA GGGCTACCCACGCC TTGCTCGCGGCAATC TM1040_3265 266624 - 267874 + | acetylornithine deacetylase TM1040_3266 267890 - 268942 + | periplasmic binding protein/LacI transcriptional regulator TM1040_3267 269124 - 270077 + | inner-membrane translocator TM1040_3268 270091 - 271302 + | hypothetical protein TM1040_3269 271299 - 272042 + | ABC transporter related TM1040_3270 272879 - 272076 - | short-chain dehydrogenase/reductase SDR TERM 245 272716 - 272700 - G 100 -11.5 -5.00616 | GTCGGCGTCAAAAAA GCGCGCC TCA GGCGCAC CGGCAGCGCGCAGGG TM1040_3271 274402 - 272876 - | AMP-dependent synthetase and ligase TERM 246 273901 - 273911 + g 71 -8.2 -4.06502 | GGTTGCCACAGGTGA GGGC GAC GCCC TTTGGTTTGCCGGTC TM1040_3272 275559 - 274399 - | acetyl-CoA acetyltransferase TM1040_3273 275643 - 276200 + | LuxR family transcriptional regulator TERM 247 276517 - 276503 - T 80 -5.6 -4.99043 | opp_overlap 276503, overlap 276504 GGTGGATAAAGAAAA GCGTCC AGT GGACGG TATTACCGCCAAACA TERM 248 276595 - 276610 + T 76 -5.4 -4.8048 | CAGAACGAGAATGAG CGGCTT CGCA AAGCTG TTTTTGATCTGACGC TM1040_3274 276818 - 276579 - | hypothetical protein TM1040_3275 276840 - 277046 + | transposase orfB TM1040_3276 277180 - 277410 + | transposase orfB TERM 249 277782 - 277768 - T 84 -5.6 -5.09204 | overlap 277770 AGAGGTCAACAAAAA TACCCC GTC GGGGAA GCCGCTGCTCGCGCA TERM 250 277780 - 277770 - T 73 -8.2 -4.16909 | overlap 277768 AGGTCAACAAAAATA CCCC GTC GGGG AAGCCGCTGCTCGCG TM1040_3277 280044 - 277819 - | periplasmic sensor hybrid histidine kinase TERM 251 279571 - 279559 - G 74 -3.4 -4.77036 | overlap 279567 279568 GGCGATCATCAAAAA GACA TAGAG TGTC GCGGCGACCGCAAAA TERM 252 279825 - 279784 - G 91 -4.2 -5.47159 | overlap 279786 GTCGAAGACAAAAAA GC-TCCAGGCCACGGGCACG AGCA CGATCCCG-GGCCAGGCCGC CAATGACCATGCGAC TM1040_3278 281094 - 280321 - | hypothetical protein TERM 253 280767 - 280752 - G 85 -6.1 -5.0916 | TGCGCAAGACAAAAA GGCGA ACCTCA TCGCC TTCAACTTTTCTGGC TM1040_3279 281477 - 281905 + | hypothetical protein TM1040_3280 282978 - 282061 - | hypothetical protein TERM 254 282480 - 282469 - G 80 -3.6 -5.06414 | overlap 282477 CGCTCCCAACAAAAA GAGC AAAT GCCC GGTCCCCATGCCCTG TERM 255 282638 - 282624 - G 79 -8.5 -4.57569 | GGACCGCGGCAAAAA CCGGC ATGAG GCCGG GAACCATCGCCCCTG TM1040_3281 283272 - 283051 - | 4-oxalocrotonate tautomerase TM1040_3282 283657 - 283277 - | hypothetical protein TM1040_3283 284922 - 284032 - | LysR family transcriptional regulator TM1040_3284 285111 - 285689 + | NADPH-dependent FMN reductase TERM 256 285791 - 285746 - T 70 -10.3 -3.32579 | gap 1, opp_overlap 285754, overlap 285749 CAACAAAACAGCCAA CAGGCACCTGCCGAGGCCCAGA GGT TC-GGGCCTCGGCGTTCGCTTG AAAGGACCCCGCGCA TERM 257 285754 - 285783 + T 88 -16.5 -3.17075 | gap 1, opp_overlap 285749 285746 CAGCCAACAGGCACC TGCCGAGGCCCAGA GGT TC-GGGCCTCGGCG TTCGCTTGAAAGGAC TM1040_3285 291822 - 286135 - | Outer membrane autotransporter barrel TERM 258 287513 - 287490 - G 70 -3.8 -4.59773 | gap 1, overlap 287491 287493 287494 CCGTACTGGCAAAAA CCACCG-AAGC GCC GCTTGCAGGGG CGGCAAACGTCACAT TERM 259 288482 - 288463 - G 79 -7.8 -4.55798 | gap 1 GAGTTCAAAGGAAAA CGCCC-CCG CCG CAGTGGGCG TATAGGCCACCGTAA TERM 260 291929 - 291906 - H 75 -2.4 -5.07567 | overlap 291907 CTATATTTTAAAAAA CTCCAAAACA ATTA TGATTTGGAC GATTGCGCACACAAT TM1040_3286 292367 - 292873 + | phage tail Collar TERM 261 293157 - 293145 - g 77 -7.7 -4.38712 | CGGAGGTGCAGAAAA GGTCA CCC TGACC GTCAACCAGATGCCC TM1040_3287 292891 - 293409 + | phage tail Collar TERM 262 293467 - 293483 + G 74 -3.5 -4.82901 | overlap 293477 TTTGCCGGGAATTTT GCGCCGC GCA GCTGGGC TTTTTGTGACGGCCA TM1040_3288 293419 - 293946 + | phage tail Collar TM1040_3289 294016 - 295233 + | hypothetical protein TM1040_3290 295230 - 295811 + | GCN5-related N-acetyltransferase TM1040_3291 296080 - 295787 - | hypothetical protein TM1040_3292 297275 - 296382 - | hypothetical protein TM1040_3293 298483 - 297512 - | transcriptional regulator TERM 263 297678 - 297693 + g 74 -5.4 -4.51097 | opp_overlap 297671, overlap 297680 GAGAGATAGCGTGCA TGCTGC AGCC GCAGTA TTTTGTAATACTTAC TM1040_3294 298528 - 300558 + | acetoacetyl-CoA synthetase TM1040_3295 300578 - 301495 + | hypothetical protein TERM 264 302980 - 303002 + F 80 -11.2 -3.75153 | overlap 302981 GCGGATAACTTGGGC CCCCGGCAGC TGC GCTGTCGGGC TTTCCCTTCGCGGGC TERM 265 302981 - 303001 + F 79 -14.7 -2.84878 | overlap 302980 CGGATAACTTGGGCC CCCGGCAGC TGC GCTGTCGGG CTTTCCCTTCGCGGG TERM 266 303012 - 303043 + F 73 -8.7 -3.94812 | TCGGGCTTTCCCTTC GCGGGCCGGAT ATCCTCCCCG GTTCGGCCCGC TCTTTTTGAATACCA TERM 267 303981 - 303991 + G 71 -8.2 -4.04206 | TATCAGGCGTTGCCC GCGG CAT CCGC TTTATCTCGGAATGG TM1040_3298 303158 - 304633 + | BCCT transporter TERM 268 305832 - 305802 - g 85 -6.6 -4.76075 | overlap 305804 ACGAGATCAAGAAAA GCGCGGGCCTGCGC GGC GATCAGGCCGGCTC CCTGTCGAAGGGCGG TM1040_3299 304724 - 306997 + | multi-sensor signal transduction histidine kinase TERM 269 307611 - 307635 + G 71 -7.9 -4.07568 | opp_overlap 307611 307610 TTCGGGCGATCAAAT TCCTCAGCGAT CAG ATCCTTGAGGA TTTTGCAGCCGGGGA TM1040_3300 307142 - 308299 + | response regulator receiver sensor signal transduction histidine kinase TM1040_3301 308794 - 308585 - | endoribonuclease L-PSP TM1040_3302 309152 - 308814 - | hypothetical protein TERM 270 310050 - 310013 - R 82 -13.4 -3.53012 | gap 1, overlap 309996 GGCGCTCTGGTGAAA GGGGCGC-CGCGCGG CTTCGACGT CCGCGCTTGCGCCCC TAACGATCCTGACCT TM1040_3303 311162 - 310065 - | ABC transporter related TM1040_3304 312834 - 311182 - | alpha amylase, catalytic region TERM 271 312662 - 312637 - G 70 -3.1 -4.62069 | overlap 312649 CGGTGACGTGAAAAA GGGCGAAATCC AGAT GGCATCCACCC CAAGAGAGGCGATGT TM1040_3305 314028 - 312880 - | binding-protein-dependent transport systems inner membrane component TERM 272 313130 - 313116 - G 72 -2.8 -4.76892 | AGAGGAATTGAAAAA TCGC AAAGGAG GCGA GCGCCGGGAAAGAAA TM1040_3306 315049 - 314042 - | binding-protein-dependent transport systems inner membrane component TERM 273 314897 - 314885 - G 78 -4.7 -4.7497 | overlap 314888 CGCAGGCAGCAAAAA GAGCC ATG GGCGC ACCATGTTGGCGCGG TM1040_3307 316543 - 315194 - | extracellular solute-binding protein TM1040_3308 316810 - 317850 + | LacI family transcription regulator TM1040_3309 317847 - 319181 + | Beta-glucosidase TERM 274 319189 - 319203 + T 74 -4.2 -4.83615 | opp_overlap 319189 319192 CATCCTGAACTCAAA GAAGCG CCG CACTTC TTTTTCTGAGAGGTG TERM 275 319224 - 319192 - T 95 -14.9 -4.0098 | opp_overlap 319189, overlap 319189 CCTGAACTCAAAGAA GCGCCGCACTTCT TTTTCTG AGAGGTGCGGCGC AGGCCATTTAGGCCA TM1040_3310 319723 - 319232 - | riboflavin synthase subunit beta TERM 276 319665 - 319684 + g 71 -6.4 -4.19879 | ATATCGGCATGCCAC TGCGCCTT GATG AAGGCGAA TTTTGGGGATTTTGT TERM 277 320184 - 320220 + G 75 -2.9 -4.89567 | gap 1, opp_overlap 320203, overlap 320175 320172 320186 320205 CCGCCAGCGCTGAGA CCCGCGC-TCGTGTTG AAGATG CAGCGCGGCGCATGGG TTTTGTCTTTTCCGC TERM 278 320870 - 320849 - g 79 -8.6 -4.56775 | opp_overlap 320867 ATCGCCGTGCAAAAA GCCGCGCC TTTGAT GGGGCGGC ATGTCCCGCAGGATT TERM 279 321131 - 321090 - g 80 -10 -4.07885 | opp_overlap 321095 321097 GACCCCGCGCGAAAA GCCCTGACGACGACCGGG GTGCTG CCCAGTCGCCGTCTGTTC CCCCGTTCACGTCCA TM1040_3311 320075 - 321163 + | LacI family transcription regulator TM1040_3312 321168 - 322187 + | putative periplasmic solute-binding protein TERM 280 322215 - 322193 - f 70 -10.6 -3.33911 | opp_overlap 322195 322195, overlap 322188 322195 AGTCAAATAATCCAA CACCGGGA GCGCGCG TCCCGGTG TGCTCCCGGTACTTC TERM 281 322224 - 322195 - f 70 -10.6 -3.22938 | opp_overlap 322195 322195, overlap 322193 322188 TCAAATAATCCAACA CCGGGAGCGCGC GTCCCG GTGTGCTCCCGG TACTTCAGGAAAGAA TERM 282 322195 - 322224 + F 80 -15 -2.70932 | opp_overlap 322193 322195 322188, overlap 322195 TCAAATAATCCAACA CCGGGAGCGCGC GTCCCG GTGTGCTCCCGG TACTTCAGGAAAGAA TM1040_3313 322245 - 323048 + | binding-protein-dependent transport systems inner membrane component TM1040_3314 323052 - 323840 + | binding-protein-dependent transport systems inner membrane component TM1040_3315 323837 - 324865 + | ABC transporter related TM1040_3316 324875 - 325687 + | metallophosphoesterase TM1040_3317 327014 - 325731 - | TRAP dicarboxylate transporter- DctM subunit TERM 283 326080 - 326070 - G 75 -8.2 -4.22678 | CACAGCCAACAGAAA CGCC ACT GGCG ACAGCTCCCAGCTGA TM1040_3318 327534 - 327007 - | tripartite ATP-independent periplasmic transporter DctQ TERM 284 327552 - 327584 + r 75 -12.9 -3.1552 | gap 1, opp_overlap 327559, overlap 327550 327553 327556 CACGCCCCCCGGGGG TA-GACCAGCGCTG CACCAA CAGCGCTGGTCGTA TGTTCATCACTCAGC TERM 285 327553 - 327582 + r 78 -13.6 -3.13867 | opp_overlap 327559, overlap 327552 327550 327556 ACGCCCCCCGGGGGT AGACCAGCGCTG CACCAA CAGCGCTGGTCG TATGTTCATCACTCA TERM 286 327556 - 327579 + r 76 -13.9 -2.77148 | opp_overlap 327559, overlap 327553 327552 327550 CCCCCCGGGGGTAGA CCAGCGCTG CACCAA CAGCGCTGG TCGTATGTTCATCAC TM1040_3319 328571 - 327591 - | TRAP dicarboxylate transporter, DctP subunit TERM 287 327667 - 327683 + g 72 -2.1 -4.7254 | overlap 327669 TAGGCAGACTGGATT GACGCTT GGA ACGCGGC TTTTTCATCGGCGCT TM1040_3320 329566 - 328688 - | 6-phosphogluconate dehydrogenase, NAD-binding TM1040_3321 331141 - 329654 - | aldehyde dehydrogenase (acceptor) TERM 288 330291 - 330301 + g 72 -2.4 -4.72846 | opp_overlap 330277 ACCGCCATGGCTGCG ACGG GCA CCGC TTTTTCAATGTCTGC TERM 289 330964 - 330945 - G 71 -7.8 -4.07885 | gap 1, opp_overlap 330957 CACGGCCCCTCAAAA GCCGC-GCG CGC CGCCGCGAC AGCCGCATCAACATC TERM 290 331724 - 331690 - g 70 -3.4 -4.65895 | gap 1, opp_overlap 331693 331699 GGCTTTAGTGAAAAA TCGGCGCGGGTCGGC TATGCT GCCTTCCT-CGCCGA GATGGCCGGAGTTGT TM1040_3322 331411 - 332034 + | hypothetical protein TM1040_3323 333173 - 332127 - | malate/L-lactate dehydrogenase TERM 291 333234 - 333256 + H 71 -7.7 -4.19238 | gap 1 AGTCGACACGACTAC CCCCGCCGTG TCCG CACG-TGGGG TTTTCAACTTGAAAG TERM 292 333938 - 333921 - g 70 -3.3 -4.59773 | gap 1, overlap 333923 CGGGATGTCGAAAAA GC-CTGCG CCG CGCTGCGC GATCACATCACGCGC TERM 293 333951 - 333973 + G 72 -12 -3.38812 | opp_overlap 333949 333946, overlap 333950 CGCGATCACATCACG CGCACCAAGG ATG CCTTGCTGCG TCTTGTTGCCGAAAA TM1040_3324 333330 - 334019 + | GntR family transcriptional regulator TERM 294 334640 - 334657 + G 72 -14.1 -2.60212 | opp_overlap 334639, overlap 334639 CTGGCGGCGACACAG CCGCCGC GCTT GCGGCGG GTTGTCCGGTGGTCG TM1040_3325 334135 - 335655 + | aldehyde dehydrogenase TERM 295 335695 - 335658 - f 71 -11.9 -2.76492 | gap 1, overlap 335657 335682 CGACGCAGGGTAAAC CTCCCCCCGACCCGGAGC ACT ACACCGGGTCGGGGAT-G TCCGGACCGCGGCAG TERM 296 335785 - 335807 + F 76 -3.5 -4.88295 | CGCCAAAGAAATCGG TATCACGAG ACGCG TTTGTGATA TTTTTGGATTTCTTT TM1040_3326 336360 - 336977 + | paraquat-inducible protein A TM1040_3327 336974 - 337579 + | paraquat-inducible protein A TM1040_3328 337576 - 339660 + | hypothetical protein TM1040_3329 339662 - 340219 + | hypothetical protein TM1040_3330 340973 - 340248 - | ABC transporter related TERM 297 340766 - 340749 - G 73 -9.8 -3.64184 | AAACACCATGCCAAA GCGGCG CTTGCC CGCCGC CAGCCCGGTAATGTC TM1040_3331 341773 - 340970 - | Sulfate ABC transporter, permease protein CysW TERM 298 341707 - 341688 - G 70 -10 -3.53224 | gap 1, overlap 341666 341701 CAGCCCTCGCTGAAA GC-GCGGTG GAA CACCGCCGC CACGGGCACTGCGAT TM1040_3332 342667 - 341777 - | Sulfate ABC transporter, permease protein CysT TERM 299 341868 - 341845 - G 81 -5.2 -4.92757 | overlap 341846 341860 CGATCAACAACAAAA GCGATAGCCC CAGA AGGCTACCGG CAATCGCCGCCGCCG TERM 300 342597 - 342578 - G 77 -7.8 -4.42081 | gap 1, overlap 342571 AAGAGAAAGGGAAAA CCCCG-GCA GCA CGCGCGGGG CGGTTCGGGTCAGGG TM1040_3333 343723 - 342686 - | thiosulphate-binding protein TERM 301 343487 - 343497 + g 76 -6.8 -4.51743 | opp_overlap 343487 AGCCTGTTTGGAAGA GCCA GCA TGGC TTTGTTTGATGGTCA TM1040_3334 344066 - 345592 + | hypothetical protein TM1040_3335 345607 - 346299 + | two component transcriptional regulator TERM 302 346805 - 346839 + G 91 -13.6 -3.89346 | gap 1, opp_overlap 346825 TGTCGTTTCTGTTGC GCGCACGCGGG-TGC GAGACA GCAGCCCGCCTGCGC TTTATACGCTCAGCC TM1040_3336 346296 - 347858 + | periplasmic sensor signal transduction histidine kinase TM1040_3337 348940 - 347840 - | NADH:flavin oxidoreductase/NADH oxidase TERM 303 348085 - 348103 + g 76 -13.1 -3.34715 | opp_overlap 348074 348071, overlap 348083 ACACCTCACGCAGAG CCGCGCG AAAGG CGCGCGG TGTTTCAGGAGCATC TM1040_3338 349061 - 349960 + | LysR family transcriptional regulator TM1040_3339 350931 - 350035 - | LysR family transcriptional regulator TERM 304 350616 - 350600 - G 93 -7.9 -5.00616 | overlap 350602 TGGTCCGCCAAAAAA CGCGCGA GGA TCGCGGG CAGGAATTCCGTCAC TM1040_3340 351039 - 351881 + | hypothetical protein TERM 305 351979 - 351940 - T 82 -15.9 -2.88677 | opp_overlap 351944 351949 351972, overlap 351944 351949 CAGATAAGTAGGACA CATAGAAAAGGCGGGAC GTTGAT GTCCCACCTTTTCTTTG GCCTATCCAGAGAGA TERM 306 351975 - 351944 - T 82 -15.3 -3.04157 | opp_overlap 351944 351949 351972, overlap 351940 351949 TAAGTAGGACACATA GAAAAGGCGGGAC GTTGAT GTCCCACCTTTTC TTTGGCCTATCCAGA TERM 307 351944 - 351975 + T 84 -13.8 -3.63627 | opp_overlap 351944 351940 351949, overlap 351949 351972 TAAGTAGGACACATA GAAAAGGCGGGACG TTGA TGTCCCACCTTTTC TTTGGCCTATCCAGA TERM 308 351949 - 351970 + T 86 -7.9 -4.89521 | opp_overlap 351949 351944 351940, overlap 351944 AGGACACATAGAAAA GGCGGGACG TTGA TGTCCCACC TTTTCTTTGGCCTAT TERM 309 351970 - 351949 - T 83 -9.4 -4.65446 | opp_overlap 351944 351949, overlap 351944 351940 AGGACACATAGAAAA GGCGGGAC GTTGAT GTCCCACC TTTTCTTTGGCCTAT TM1040_3341 352822 - 352034 - | ABC transporter related TM1040_3342 353945 - 352824 - | inner-membrane translocator TERM 310 354006 - 353981 - R 100 -14.7 -4.1523 | GTCAGGATAGAGAAA GGGCGGCCAAA TCGC TCCGGCCGCCC TTGGGAAGGAAATCA TM1040_3343 354969 - 354019 - | periplasmic binding protein/LacI transcriptional regulator TM1040_3344 355156 - 356160 + | LacI family transcription regulator TM1040_3345 357290 - 356157 - | oxidoreductase-like TM1040_3346 358196 - 357303 - | xylose isomerase-like TIM barrel TM1040_3347 359319 - 358216 - | oxidoreductase-like TERM 311 358853 - 358832 - G 84 -5.7 -4.91109 | GGGTTAGCATAAAAA TCCTCGGTG TGTT CGCCGCGGA ACCAGGTGATCTCAC TERM 312 359643 - 359609 - g 72 -12.9 -3.02511 | gap 1 GCGAGGCGTTGAACA CCGTCCGCGAT-GCGC TTCC GCTCTATCGCGGACAG AATGAACAAAGCATG TM1040_3348 359443 - 361311 + | thiamine pyrophosphate enzyme, central region TM1040_3349 361412 - 362386 + | PfkB TM1040_3350 362399 - 363241 + | myo-inositol catabolism IolB protein TERM 313 363286 - 363261 - g 74 -12.7 -3.16071 | opp_overlap 363282, overlap 363259 363257 363282 GGCGACACTAAGAGA CGTCCTTCAAC CTGC ATTGAAGGACG GCTACGCTGTGGCAG TM1040_3351 363238 - 364068 + | fructose-bisphosphate aldolase TM1040_3352 364070 - 365059 + | myo-inositol 2-dehydrogenase TERM 314 365139 - 365098 - T 100 -16 -3.95449 | opp_overlap 365106, overlap 365099 GGATAACACATGAAA CGAGTGTACCAAGCCCCT GATATA AGGGGCCTGGTACATTCA AGGGCGAACCCATTG TERM 315 365138 - 365099 - T 89 -17.3 -2.96546 | opp_overlap 365106, overlap 365098 GATAACACATGAAAC GAGTGTACCAAGCCCCT GATATA AGGGGCCTGGTACATTC AAGGGCGAACCCATT TM1040_3353 366228 - 365203 - | hypothetical protein TERM 316 366209 - 366181 - G 73 -9.6 -3.96148 | opp_overlap 366200, overlap 366185 366196 CGCCTTTAGCAGAAA CG-CACGCGCGACG AAG CGCC-CGCGTGGCG CGATGGATTGTGTTT TM1040_3354 367584 - 366235 - | di-haem cytochrome c peroxidase TERM 317 367215 - 367260 + g 70 -4.7 -4.57341 | gap 2, overlap 367249 TCACATGCTCAAGCG CGTGCGCCCCG-AG-GTTCCA AAGCGC TGGCGCGTTCCGGGGCACACG TTTTTGCACCCGGTT TERM 318 367249 - 367273 + g 74 -6.4 -4.41548 | gap 1, overlap 367215 AAGCGCTGGCGCGTT CCGGG-GCACA CGTT TTTGCACCCGG TTTTGTCCCGTATCG TM1040_3355 367612 - 368055 + | Sel1 repeat-containing protein TM1040_3356 368437 - 368123 - | stress responsive alpha-beta barrel TERM 319 368511 - 368487 - R 70 -10.6 -3.33162 | opp_overlap 368486 368484 368482 368487 GAGCGTATCGGATAA GGGCCGCCGC GCAAT GAGACGGCCC CTGTGTTTACAACCT TM1040_3357 369584 - 368526 - | TRAP dicarboxylate transporter- DctP subunit TM1040_3358 371096 - 369621 - | TRAP dicarboxylate transporter- DctM subunit TERM 320 370187 - 370171 - G 70 -10.1 -3.42768 | overlap 370163 370175 ATGAAAATCGCATAA GCAACCG CTA CGGCTGC GGCCTCTGTCGGGGT TM1040_3359 371686 - 371096 - | tripartite ATP-independent periplasmic transporter DctQ TERM 321 371476 - 371453 - G 78 -10.2 -3.89881 | ATCAATGGCGACAAA CCCACCGCGC CGAA ACGCGGTCGG CGCCATCAGGCCAGT TERM 322 371540 - 371511 - G 91 -13.6 -3.94409 | opp_overlap 371511 371512, overlap 371512 CACAGCATGCAGAAA CGCGCTGCCTCG TCCGGC CAAGGCAGCGCA TTTCCAAGCACATAG TERM 323 371539 - 371512 - G 79 -14.9 -2.96164 | opp_overlap 371511 371512, overlap 371511 ACAGCATGCAGAAAC GCGCTGCCTCG TCCGGC CAAGGCAGCGC ATTTCCAAGCACATA TERM 324 371576 - 371566 - G 88 -6.8 -4.92385 | CATAGCGAAAGAAAA CCTG AAT CAGG ATCGCAATCACCATT TERM 325 371652 - 371635 - G 95 -12.7 -4.14392 | GTCCAACCGCCAAAA GCCCGCT GTTG AGCGGGC GTAATACAGCCAGTA TM1040_3360 372262 - 371744 - | flavin reductase-like, FMN-binding TM1040_3361 373152 - 372262 - | aldo/keto reductase TM1040_3362 374306 - 373152 - | alkanesulfonate monooxygenase TERM 326 373895 - 373919 + g 89 -10.7 -4.56597 | CGACCTCGCGTGAGC GCTGGTAGCGA TAA TCGCTATCCGC TTTTTCGCCCGGGAA TM1040_3363 374370 - 375119 + | GntR family transcriptional regulator TM1040_3364 375128 - 376234 + | oxidoreductase-like TM1040_3365 377040 - 376336 - | hypothetical protein TERM 327 377242 - 377253 + r 72 -2.2 -4.87273 | gap 1, overlap 377237 377241 CGTTTCAGATCGTGT C-GCG GCG CGCTG TTTTTGTGAAGTGTT TM1040_3366 378076 - 377231 - | response regulator receiver protein TERM 328 378262 - 378296 + H 100 -15.7 -4.35524 | opp_overlap 378258, overlap 378264 TCTCGGACAAGTTTT TGCCCACCGCGCCGA TGTGT TCGCCGCGGTGGGAA TTTTGGCTTTGAAAG TERM 329 378264 - 378294 + H 86 -18.3 -2.52017 | opp_overlap 378258, overlap 378262 TCGGACAAGTTTTTG CCCACCGCGCCGA TGTGT TCGCCGCGGTGGG AATTTTGGCTTTGAA TM1040_3367 378322 - 379098 + | MltA-interacting MipA TERM 330 379238 - 379215 - g 82 -12.4 -3.60971 | ACTTCAACGCCGAAA GCACGCCCCT CAAG ATGGGCGTGC TCACTCCGGAGGATG TM1040_3368 379109 - 380320 + | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway)-like TERM 331 380402 - 380361 - T 91 -18 -3.30038 | overlap 380356 380363 CAGACTCAAACTGAA GAGAGCACGCGCGAGACC TTCTAT GGTCTTGCGCGCGCTCAC AGGGCTAGAGGTAAG TERM 332 380400 - 380363 - T 95 -19.2 -3.21063 | overlap 380361 380356 GACTCAAACTGAAGA GAGCACGCGCGAGACC TTCTAT GGTCTTGCGCGCGCTC ACAGGGCTAGAGGTA TM1040_3369 381780 - 380407 - | hypothetical protein TM1040_3370 383009 - 381777 - | deoxyribodipyrimidine photo-lyase family protein TERM 333 384278 - 384262 - g 76 -5.8 -4.72272 | opp_overlap 384274 CGCCGCGATTAAAAA GCAGAG AGACA CCCTGC AGCCGATGGAGGTCT TM1040_3371 383222 - 385885 + | histidine kinase TM1040_3372 385946 - 386266 + | response regulator receiver protein TM1040_3373 386263 - 386979 + | two component transcriptional regulator TERM 334 387001 - 387027 + T 100 -10.8 -5.86061 | opp_overlap 386998 CAGCTCGAAAAGCGG CGGCGCGCAG AAGGACC CTGCACGCCG TTTTTTTTGATGCCA TM1040_3374 388558 - 387083 - | hemolysin-type calcium-binding region TERM 335 388635 - 388647 + H 84 -5.5 -5.03994 | GCCACCGGACATGAC CGGCA TTC TGCTG TTTTTGTGTATCGGC TERM 336 390247 - 390229 - g 74 -6.6 -4.28994 | CATGATCGACGAAAA GGGCCAAG GCG CCCAGCCC AACCTTCACTAATGC TM1040_3375 389009 - 390259 + | sarcosine oxidase beta subunit family protein TM1040_3376 390288 - 390584 + | sarcosine oxidase, delta subunit, heterotetrameric TERM 337 391848 - 391867 + G 75 -7.8 -4.183 | GCGGGCGCCCGGTGT GGCGCGAA GACA TTCACGCC TTTGTTCCGGGTTCA TERM 338 392886 - 392865 - g 75 -2.9 -5.00884 | overlap 392866 AGCTGCTGCAAAAAA TTGTCGACC CGGA GTTCGACAT CTCCAACGCCGCCTT TM1040_3377 390581 - 393535 + | sarcosine oxidase alpha subunit family protein TM1040_3378 393528 - 394079 + | sarcosine oxidase gamma subunit family protein TM1040_3379 395104 - 394091 - | transcriptional regulator TERM 339 394463 - 394482 + g 93 -6.4 -5.24129 | gap 1, overlap 394442 394464 CAGGTTCTGGCTTTT TGCCGTGTC ATG GAC-CGGCG TTTTTTGTGCAGCGG TM1040_3380 396009 - 395104 - | LysR family transcriptional regulator TERM 340 395833 - 395821 - G 73 -9.1 -3.96148 | CTGCTCCAGCACAAA CGCAC CCA GTGCG GTCAACTTGCTTTTG TM1040_3381 396121 - 397569 + | aldehyde dehydrogenase TERM 341 398140 - 398124 - g 74 -5.8 -4.44667 | gap 1, overlap 398126 CTGCGCAACAAGAAA GACGCGG TGAT CCGCG-C GGTTACCGAAAACGG TERM 342 398139 - 398126 - g 71 -9.5 -3.82963 | overlap 398124 GCGCAACAAGAAAGA CGCGG TGAT CCGCG CGGTTACCGAAAACG TERM 343 398146 - 398167 + G 72 -2.9 -4.72846 | TGATCCGCGCGGTTA CCGAAAACG GCGG CATGTTCGG TTTTTCGGTCTATCC TERM 344 398470 - 398510 + G 77 -3.9 -5.00616 | gap 1, overlap 398471 398509 CCGTTGGCATGACGA CCGGTG-AAGTCGCCGCC ATCATG GGCGGCAACTGGTACCGC TTTTTTGCAGAAAGC TM1040_3382 397569 - 398549 + | peptidase M19, renal dipeptidase TM1040_3383 398618 - 400162 + | BCCT transporter TERM 345 400190 - 400165 - f 75 -11.1 -3.44284 | overlap 400163 400167 CCGCGAGCAATAAGA CACTGGGCGCT CTCG AGCGCCCAGCC AACTTTGCGTGTTTT TERM 346 400188 - 400167 - f 87 -15.9 -3.29142 | overlap 400165 400163 GCGAGCAATAAGACA CTGGGCGCT CTCG AGCGCCCAG CCAACTTTGCGTGTT TM1040_3384 400275 - 401978 + | hypothetical protein TM1040_3385 401975 - 402625 + | hypothetical protein TERM 347 403531 - 403513 - g 70 -12.4 -2.88544 | CTTTATCGCCATAGA CCCGGACG CTA CATCCGGG GGGCTCTTTCAGGAA TM1040_3386 402659 - 403693 + | malate/L-lactate dehydrogenase TERM 348 405293 - 405303 + G 75 -8.2 -4.15044 | opp_overlap 405253 CGATCTCGCAGGCCC CCGC ATG GCGG TTTCTTGAAGGGCAC TERM 349 406796 - 406784 - g 89 -4.7 -5.23316 | opp_overlap 406784 406785, overlap 406785 CAGTATATGAAAAAA TCCGC GCA GCGGG TGGTGTTTGCATCGC TERM 350 407096 - 407073 - g 71 -6.6 -4.25283 | gap 1, opp_overlap 407074, overlap 407074 AGGGTTGCAGGAAAA TGCCCGCGCCC GTG GGGCG-GAGCT GATCTCAGGGCTCAG TM1040_3387 404374 - 407385 + | hypothetical protein TM1040_3388 408393 - 407476 - | LysR family transcriptional regulator TERM 351 410160 - 410125 - g 70 -10.4 -3.56092 | GCATCATGCCGGAAA TCACCAGCGGCAACAC CAAT GCGCCGACGCTGATGA TCGCGGAAAAAGCGG TM1040_3389 408474 - 410201 + | glucose-methanol-choline oxidoreductase TM1040_3390 411202 - 410234 - | aldo/keto reductase TM1040_3391 412496 - 411219 - | mandelate racemase/muconate lactonizing-like protein TERM 352 411900 - 411864 - G 79 -12.2 -3.53012 | gap 1, opp_overlap 411868 TTTGGTGTGGGTAAA GCC-CGCCGCGCGCGCC TCGC GGCACAGGCGGCGCAGC TTCTCATCAGAATAG TM1040_3392 413338 - 412493 - | 5-carboxymethyl-2-hydroxymuconate delta-isomerase TM1040_3393 414115 - 413357 - | short-chain dehydrogenase/reductase SDR TM1040_3394 414441 - 414112 - | hypothetical protein TM1040_3395 415550 - 414441 - | mandelate racemase/muconate lactonizing-like protein TM1040_3396 416649 - 415555 - | ABC transporter related TERM 353 415645 - 415621 - G 73 -9.3 -3.86916 | gap 1 GAGCATCAGATGAAA CG-GCAGCCG TTCGCC CGGCTGCACG GGACGCGGGTTGAGC TM1040_3397 417516 - 416653 - | binding-protein-dependent transport systems inner membrane component TERM 354 417298 - 417288 - G 73 -4.6 -4.7078 | GGAAGTATTGAAAAA CGGG CAC CCCA CCTTCGCCCGCACCG TERM 355 417540 - 417560 + r 85 -14.7 -3.53224 | CCCCGCCATGCCCAG CTCGGCGCG TGC CGCGCTGAG TTTCCGGAAGAAATA TM1040_3398 418418 - 417522 - | binding-protein-dependent transport systems inner membrane component TERM 356 418485 - 418458 - R 70 -12 -2.57769 | overlap 418457 418455 418453 AGTGAGGAAAGAGAG CCCCGGCCAA GTCAGGCG CTGGCCGGGG GTGGCATATGATTAG TM1040_3399 419819 - 418497 - | extracellular solute-binding protein TM1040_3400 419964 - 420770 + | IclR family transcriptional regulator TM1040_3401 420767 - 421627 + | amidohydrolase 2 TM1040_3402 422220 - 421630 - | putative transcriptional regulator TM1040_3403 423107 - 422223 - | hypothetical protein TERM 357 423123 - 423133 + H 79 -8.2 -4.3739 | ATTGCAAGCCTAGGC GCGC GCG GCGC TTTTGTCCACAAATG TERM 358 424041 - 424079 + G 70 -12.7 -2.88544 | opp_overlap 424053, overlap 424053 GGCATTCGCGCCGAC TT-GCCGGAGAATGAACGC CTG GCGTT-GTTCTCCGGCCAA TCTCTCAGGGTCGCA TM1040_3404 423285 - 424160 + | putative integrase TM1040_3405 425248 - 424166 - | ParB-like nuclease TM1040_3406 426713 - 425250 - | cobyrinic acid a,c-diamide synthase TERM 359 426740 - 426763 + H 95 -10.4 -4.83169 | gap 1, overlap 426743 TTTGTGGGTACCTTT CAG-GGTTTCG CAG CGAAACCTCTG TTTTTCTAACAAAAT TERM 360 426743 - 426759 + H 74 -10.9 -3.61001 | overlap 426740 GTGGGTACCTTTCAG GGTTTCG CAG CGAAACC TCTGTTTTTCTAACA TERM 361 427621 - 427656 + G 77 -11.2 -3.57263 | AGGAATGGGGTGTGT CGGCGCTCTTGAGTTT TGCG AAGCTCAAGAACGGCG TTTGCGAGTACGCAT TERM 362 428365 - 428331 - g 84 -6.3 -4.89852 | gap 1 CGAGAGGCAGAAAAA GCGGCGGAGGACGCTG CGTT CAAGGCCCGC-GCCGC GGAGCGTCGTGAACG TM1040_3407 427302 - 428594 + | initiator RepB protein TERM 363 428639 - 428613 - T 100 -12.3 -5.37043 | opp_overlap 428613 AGGGGACACAAAAAA CGGGTGATCCC GTTTT GGAACCACCCG CATGTCCAAAACGCA TERM 364 428613 - 428624 + T 71 -7.2 -4.07568 | opp_overlap 428613 AGGGGACACAAAAAA CGGG TGAT CCCG TTTTGGAACCACCCG TM1040_3408 430182 - 428668 - | malonyl-CoA synthase TERM 365 429061 - 429080 + g 83 -4.2 -5.02476 | AATGAAAAAACCGTC CTCTCGCA GTTC TGCGGCAG TTTTTTCAGGCATCT TERM 366 430261 - 430248 - H 75 -9.5 -3.83026 | opp_overlap 430248 TCTGGGCATATTAAA GGGGC ATGC GCCCC TGTGATCTCGAAATT TERM 367 430616 - 430652 + H 73 -8 -4.18164 | gap 1, opp_overlap 430637 430640, overlap 430615 430637 TTGAGCGTTCACGCT CTGC-GATGCGCGATGT TAGA ACAACGCGTCTCCGCAG TTGTTTTCAAACCTT TERM 368 431590 - 431551 - g 71 -8.7 -3.73224 | gap 2, opp_overlap 431583 GCATTCTGGATCAAA TCGGCGAAGCGTTGAGC GAAGGTGT GCCCA-CGC-TCGCCGA GATCGCCGGGTGTAT TM1040_3409 430821 - 431840 + | AraC family transcriptional regulator TERM 369 432788 - 432757 - g 77 -14.5 -2.71681 | GAATTTGCGCAATCA GCCGCGTTGGC GGGCAAGTGG GCCAACGCGGC CTGGGAAATGAAAAC TM1040_3410 431965 - 432822 + | NmrA-like TM1040_3411 432819 - 433247 + | hypothetical protein TERM 370 433527 - 433510 - T 100 -14.1 -4.59773 | opp_overlap 433510 GGGGACTCGCAAAAA GGGGGCC AGTC GGCCCCC TTTCTTTCGTCTCTT TERM 371 433510 - 433527 + T 100 -14.1 -4.56113 | opp_overlap 433510 GGGGACTCGCAAAAA GGGGGCC AGTC GGCCCCC TTTCTTTCGTCTCTT TM1040_3412 434764 - 433541 - | Na(+)-translocating NADH-quinone reductase subunit F TERM 372 434352 - 434374 + g 84 -6.2 -5.00616 | overlap 434354 GTTGCGACGTTTTCA TTGGAGCGCA CGG TGCACTCCCA TTTTTTCACGCCGAA TM1040_3413 435386 - 434778 - | Na(+)-translocating NADH-quinone reductase subunit E TM1040_3414 436039 - 435386 - | Na(+)-translocating NADH-quinone reductase subunit D TERM 373 435657 - 435671 + g 71 -9.2 -3.71848 | opp_overlap 435656 435657 ACCCCGTCGATAAAG CTCGCC ACG GGCGGG TTCTTCATCGCAAAG TM1040_3415 436851 - 436039 - | Na(+)-translocating NADH-quinone reductase subunit C TM1040_3416 438043 - 436844 - | Na(+)-translocating NADH-quinone reductase subunit B TERM 374 437471 - 437500 + g 73 -10.1 -3.57144 | opp_overlap 437474, overlap 437474 AAGCGCAGGGTTCAG GAAGTTTTTGCCG GTGC CGCCAAAGACTTC TTTGCCGATCACCAC TM1040_3417 439391 - 438048 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 375 438674 - 438685 + g 78 -2.2 -5.02074 | opp_overlap 438643 CGTCATGATAGCCAA TGGT CCAG ACCG TTTTTTCGGCGGTGG TERM 376 438961 - 438977 + g 73 -10.1 -3.59979 | ATCGCCGCAGGTGCT GTGTCCG GCG CGGGCAC TTTGGAATAGGGACG TERM 377 439325 - 439368 + g 70 -3.1 -4.61633 | gap 1, overlap 439326 CTTTTGCTGCGTCTT CGATCTTGGTG-TCAGGTGC CCCCA GCACCGGAACATCGAGACCC TTTTTCAACGTATGT TM1040_3418 439560 - 440591 + | ApbE-like lipoprotein TM1040_3419 440622 - 440861 + | hypothetical protein TM1040_3420 444114 - 440986 - | hydrophobe/amphiphile efflux-1 HAE1 TERM 378 441410 - 441387 - G 73 -4.5 -4.64766 | CCCAGACGCCAAAAA TGGCGACCA TTACCG CGGCCACCA CAGAAAGCATGACGC TERM 379 441916 - 441889 - G 81 -6.2 -4.84311 | gap 1, overlap 441892 CTGCAGAGAAGAAAA CAC-CTGCGGCAG TGT CAGCCCCAGCGTG TAGAGCCGGTCCCGA TM1040_3421 445271 - 444126 - | secretion protein HlyD TM1040_3422 445506 - 445916 + | WxcM-like TM1040_3423 445913 - 447013 + | DegT/DnrJ/EryC1/StrS aminotransferase TM1040_3424 447010 - 447975 + | glycosyl transferase family protein TM1040_3425 448977 - 448036 - | hypothetical protein TM1040_3426 449903 - 448974 - | hypothetical protein TM1040_3427 450579 - 449905 - | hypothetical protein TERM 380 450267 - 450243 - G 70 -4.2 -4.49756 | gap 1, opp_overlap 450225, overlap 450225 450224 TTTCAAAGATGAAAA CATTCTCGCCG AGCT CGGCG-GTACG CCACACGAAGGCATG TERM 381 451884 - 451895 + G 71 -7.2 -4.1891 | GCCGCCTTTGGCCTG CCGG ACGA CCGG TTTGTATTCGCGAGC TM1040_3428 450816 - 452498 + | tetratricopeptide TPR_2 TM1040_3429 453402 - 452503 - | rhodanese-like protein TM1040_3430 453595 - 454200 + | nicotinamidase TERM 382 454373 - 454403 + G 74 -11.2 -3.53091 | overlap 454360 GATCCGGTACGCGGT CATCCGCGCG CGGATGTATTA CGCGCGGATG TTTGCGGCGGCAGGT TM1040_3431 454284 - 456554 + | PAS/PAC sensor hybrid histidine kinase TM1040_3432 456618 - 457907 + | nicotinate phosphoribosyltransferase TM1040_3433 458381 - 457908 - | hypothetical protein TM1040_3434 459988 - 458378 - | ABC transporter related TM1040_3435 460800 - 459985 - | binding-protein-dependent transport systems inner membrane component TM1040_3436 461744 - 460797 - | binding-protein-dependent transport systems inner membrane component TERM 383 461698 - 461678 - G 71 -8.3 -4.12188 | CGATCACGGCGAAAA TCACCATGG ATG CAATGGTGA GACTGAGAGCGAGCG TERM 384 461865 - 461838 - R 100 -17 -4.07687 | AGGTGGGGTCGAAAA CGCCGGGCCTGA TCGG TAAGGCCCGGCG CAAGACGAGGGTTTT TM1040_3437 463357 - 461879 - | extracellular solute-binding protein TERM 385 463623 - 463609 - g 93 -8.5 -5.06451 | CATCATCGCAAAAAA CGGCC CTAAC GGCCG AAGACATCCGGGCCA panB 463587 - 464429 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 386 464434 - 464412 - f 71 -4.8 -4.57073 | CACGCGCCGCAAAAA GCCCCTCAAC AAG ACTGAAGGAC TGCTCCCGATGACTC TERM 387 464600 - 464611 + G 81 -4.4 -4.87665 | overlap 464585 464599 CCGCCTGCGATCATG TGGT TGTC ACCA TTTTTGTGAATCCCA TM1040_3439 464443 - 465285 + | pantothenate synthetase TERM 388 466718 - 466698 - g 76 -10.3 -3.76224 | opp_overlap 466699, overlap 466699 466701 CCGTCATGCAGGAAA CCACCGCGC TGG GCGCGGCGT GGCTTGCGGGCATGA TERM 389 466717 - 466699 - g 75 -13.8 -2.8552 | opp_overlap 466699, overlap 466698 466701 CGTCATGCAGGAAAC CACCGCGC TGG GCGCGGCG TGGCTTGCGGGCATG TERM 390 466715 - 466701 - g 70 -12.8 -2.97667 | opp_overlap 466699, overlap 466699 466698 TCATGCAGGAAACCA CCGCGC TGG GCGCGG CGTGGCTTGCGGGCA TM1040_3440 465392 - 466876 + | glycerol kinase TERM 391 466932 - 466954 + T 95 -13.4 -4.03234 | overlap 466934 AAATATCCCGGGGGT TACAGGGGGC AGC GCCCCCTGTC TTTATGTCAAAGGCG TERM 392 466934 - 466952 + T 91 -16 -3.61232 | overlap 466932 ATATCCCGGGGGTTA CAGGGGGC AGC GCCCCCTG TCTTTATGTCAAAGG TM1040_3441 468223 - 466970 - | hypothetical protein TM1040_3442 468849 - 468295 - | isopentenyl-diphosphate delta-isomerase TM1040_3443 469465 - 468998 - | cytochrome c, class I TM1040_3444 469717 - 470052 + | hypothetical protein TM1040_3445 470059 - 470502 + | hypothetical protein TM1040_3446 470958 - 470506 - | hypothetical protein TM1040_3447 472460 - 470955 - | soluble pyridine nucleotide transhydrogenase TERM 393 470989 - 471011 + g 71 -6.9 -4.23104 | overlap 470976 471003 TTGGCCGCAGATTTG GTCTCGGTC TTTTT GGCCGGGGC TTTCTTGGCCTTTGA TM1040_3448 473310 - 472465 - | carboxylesterase TM1040_3449 473527 - 473868 + | protein of unknown function DUF861, cupin_3 TM1040_3450 474808 - 473885 - | auxin efflux carrier TM1040_3451 475100 - 475750 + | TetR family transcriptional regulator TERM 394 475831 - 475852 + F 71 -8.7 -3.75153 | opp_overlap 475833 CTCTGCGGCGTCGAA CACTTCGGC GCTG GGCGAAGTG TTTGCGTTGGGCAAG TERM 395 476023 - 476051 + G 84 -11 -4.09685 | gap 1 CGCCGCCGGCGTGAC GCCGCAGACG-GC CACG GCGCATCTGCGGC TTTTGCAGGATGCGG TERM 396 476213 - 476191 - g 76 -9.1 -4.08216 | opp_overlap 476206 TTATCGTGCGCAAAA GCGCAAGGC GGGGG GGCTTGCGC AGGTGCGCAGCTGTT TM1040_3452 475895 - 476599 + | ArsR family transcriptional regulator TM1040_3453 476650 - 476988 + | hypothetical protein TM1040_3454 477878 - 477138 - | NLP/P60 TM1040_3455 479293 - 477875 - | leucyl aminopeptidase TERM 397 478487 - 478510 + g 89 -11 -4.24342 | opp_overlap 478491 ATGCGCAAGGCCCAG GACATTGGCG GCCC CGCCCATGTC TTTCTTCATCAACGC TERM 398 478858 - 478892 + g 78 -6.5 -4.62069 | gap 2, overlap 478861 GGGCTGCGTCCACGC CATCCGGGGCCACAAGT CGT GCTT-TGGCACCGG-TG TTTTTGGCGTAGCGA TERM 399 478861 - 478890 + g 73 -9.3 -3.92746 | gap 1, overlap 478858 CTGCGTCCACGCCAT CCGGGGCCACAAGT CGT GCTT-TGGCACCGG TGTTTTTGGCGTAGC TM1040_3456 479805 - 479425 - | hypothetical protein TERM 400 479739 - 479749 + g 70 -3.2 -4.62069 | CAAGCTGCGAATAGA GTTC GCT GAGC TTTTTCGGGTCCAGA TM1040_3457 479959 - 480609 + | carbonate dehydratase TM1040_3458 481824 - 480673 - | hypothetical protein TERM 401 481913 - 481898 - H 72 -10.4 -3.40899 | overlap 481885 AACCCGCTACGACAA GCTGCG CTCG CGCAGC TGTGACAGGTTGAAA TM1040_3459 482089 - 483111 + | aspartate-semialdehyde dehydrogenase TERM 402 483188 - 483220 + F 90 -11.9 -4.25104 | opp_overlap 483186, overlap 483193 GGCAAAGACATGACT ATCGAGAGGCGTCCC ACT GGGGCGCCTCTTGCG TTTTCCTCCCGAGCA TERM 403 483193 - 483215 + F 95 -17 -3.39521 | opp_overlap 483186, overlap 483188 AGACATGACTATCGA GAGGCGTCCC ACT GGGGCGCCTC TTGCGTTTTCCTCCC TM1040_3460 483277 - 484920 + | hypothetical protein TERM 404 484926 - 484974 + F 79 -14.4 -2.84298 | gap 1, overlap 484922 CCTGCGCTGAGCGTC GCGCGCGGGTCGCCGGCCTGTTG CAAC CCGCAGGACACCG-CCCGCGCGC TCGTTCTAAAGTATA TM1040_3461 485089 - 485412 + | hypothetical protein TM1040_3462 485556 - 487508 + | amidohydrolase 3 TERM 405 487549 - 487516 - T 77 -13.9 -2.94099 | opp_overlap 487506 TCCCCTGATCAGACA GGGTTGGGCAGTCCA CTGG TGGACTGCCCAATCA AATCAGCGCCATTTT TM1040_3463 488316 - 487552 - | 2-dehydro-3-deoxyglucarate aldolase TM1040_3464 489129 - 488329 - | 2-oxo-hepta-3-ene-1,7-dioic acid hydratase TERM 406 488696 - 488664 - G 72 -11.1 -3.28712 | TGGTGTCGGTGATAA TGCGGGCCTGCCCCG TGG CGGGATCGGCGCGCA GGATACGGGTGTCGA TM1040_3465 489983 - 489126 - | 5-carboxymethyl-2-hydroxymuconate delta-isomerase TERM 407 489842 - 489861 + g 75 -7.9 -4.21275 | overlap 489845 CCTTCGCCGCTTGGG CAAGGGT GTGAAG ACCCTTG TTTTCAATCACTTCG TM1040_3466 491395 - 489983 - | aromatic-L-amino-acid decarboxylase TERM 408 491189 - 491207 + g 100 -13.2 -4.26076 | CGGGTGCTGCCAATG GGTGATGC CGG GCATCACC TTTTCCTCAAAATCG TERM 409 491425 - 491463 + r 100 -19.7 -4.34263 | gap 1, opp_overlap 491425, overlap 491426 TTCGTGCCCAAGGCA CGGACAGCGCCCGA-CCT TCCC AGGATCGGGCGCTGTCCC TTTGTCTTCTTACGG TERM 410 491463 - 491425 - R 95 -19.7 -2.52464 | gap 1, opp_overlap 491425 491426 TTCGTGCCCAAGGCA CGGACAGCGCCCGA-CCT TCCC AGGATCGGGCGCTGTCCC TTTGTCTTCTTACGG TERM 411 491426 - 491462 + r 100 -23.2 -3.19835 | gap 1, opp_overlap 491425, overlap 491425 TCGTGCCCAAGGCAC GGACAGCGCCCGA-CCT TCCC AGGATCGGGCGCTGTCC CTTTGTCTTCTTACG TM1040_3467 492453 - 491473 - | 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD TERM 412 492517 - 492499 - R 82 -16 -2.88544 | opp_overlap 492514 TGTTAGGGCGACATA CGAGGGGC TCT GCCCCTCG CGCTCCCCGGGATAT TM1040_3468 494063 - 492552 - | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase TM1040_3469 494455 - 494060 - | 5-carboxymethyl-2-hydroxymuconate isomerase TM1040_3470 494584 - 495018 + | MarR family transcriptional regulator TM1040_3471 496277 - 495015 - | hydroxypyruvate reductase TERM 413 495738 - 495761 + g 73 -10.2 -3.59979 | gap 1, opp_overlap 495754 GACTTCGGCGGGTGC GGCGGCGCGAC ACA GAC-CGCCGCC TTTGAGCTGCGACAG TM1040_3472 496475 - 497305 + | hypothetical protein TERM 414 497363 - 497333 - T 87 -15.5 -3.23174 | opp_overlap 497333 497339, overlap 497339 AGACTGTTATAAAAT GAAAAAGGGCCGC GTGAT GCGGCCCTTTTGC TTATTCTGGTGCCTC TERM 415 497333 - 497363 + T 100 -16.2 -3.8512 | opp_overlap 497333 497339, overlap 497339 AGACTGTTATAAAAT GAAAAAGGGCCGCG TGA TGCGGCCCTTTTGC TTATTCTGGTGCCTC TERM 416 497339 - 497357 + T 95 -13.8 -4.59414 | opp_overlap 497333 497339, overlap 497333 TTATAAAATGAAAAA GGGCCGCG TGA TGCGGCCC TTTTGCTTATTCTGG TERM 417 497357 - 497339 - T 100 -13.1 -5.1417 | opp_overlap 497339 497333, overlap 497333 TTATAAAATGAAAAA GGGCCGC GTGAT GCGGCCC TTTTGCTTATTCTGG TM1040_3473 498818 - 497379 - | uracil-xanthine permease TM1040_3474 499402 - 498896 - | ureidoglycolate hydrolase TM1040_3475 500814 - 499399 - | polysaccharide deacetylase TM1040_3476 501014 - 501370 + | transthyretin TERM 418 501398 - 501420 + T 86 -9.1 -4.8048 | gap 1, opp_overlap 501398 501397 TGGGAAAAGAGGAAG GGGCGG-GCT GCAG GGCACCGCCC TTTTTCATGTCCGAG TM1040_3477 502357 - 501443 - | LysR family transcriptional regulator TERM 419 502543 - 502556 + G 77 -3.1 -4.93877 | gap 1, overlap 502538 TCACCGCGATCGCCT GGATCG GGT CG-TCC TTTTATTTCGTGGCG TM1040_3478 502467 - 503726 + | hypothetical protein TM1040_3479 503802 - 505187 + | guanine deaminase TERM 420 505216 - 505241 + T 93 -13.3 -3.89617 | overlap 505220 ACTGATGGAGCGTGA CGAGCGCGGTG TCCC CACCGCGTTTG TTTAGGTTTGTCGCT TERM 421 505220 - 505237 + T 95 -12.7 -4.54343 | overlap 505216 ATGGAGCGTGACGAG CGCGGTG TCCC CACCGCG TTTGTTTAGGTTTGT TERM 422 506558 - 506538 - T 70 -9.7 -3.53343 | overlap 506525 AAGTTGGGGGTGAAA TCCCAGGGC TCA ACCCTGGAA CTGCCTCCAAAACTA TERM 423 507585 - 507566 - T 78 -6.4 -4.77165 | opp_overlap 507570, overlap 507568 507573 CTCTTCAGAACAAAA CACAGACC TACC GGTCTGTC TGGGTCGGTAGCTCA TERM 424 507583 - 507568 - T 73 -9 -4.00512 | opp_overlap 507570, overlap 507566 507573 CTTCAGAACAAAACA CAGACC TACC GGTCTG TCTGGGTCGGTAGCT TERM 425 507920 - 507862 - T 75 -12.5 -2.92442 | overlap 507906 ATCCAATAGATCAGA GGGTTCGATTAGACCTTTGAGACACCC CGCGC GGGTGGTTCAAACGTCCAATCGGACAC TGCGGCAATCGCTTG TERM 426 508801 - 508784 - T 70 -11.3 -3.02043 | AATCCTGTCTGAAGA TCGGAGG ACCA CCTCCGA AGGCTAAGTACTCCT TERM 427 509588 - 509633 + T 74 -10.3 -3.64703 | opp_overlap 509588 509591 509593, overlap 509591 GCGTAGTGTGACATA GAACAGCTCCTCCTTAGACCC CTCG GGGTCATTGGAGGAACAGTTC TTTCGATGAAGCGGG TERM 428 509633 - 509588 - T 74 -12.5 -2.88544 | opp_overlap 509588 509591, overlap 509591 509593 GCGTAGTGTGACATA GAACAGCTCCTCCTTAGACCC CTCG GGGTCATTGGAGGAACAGTTC TTTCGATGAAGCGGG TERM 429 510110 - 510097 - T 74 -4.5 -4.7254 | ACTGTTTATTAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 430 511388 - 511412 + T 71 -8.5 -3.89182 | opp_overlap 511339, overlap 511381 511389 CGCTTCCGGCCACCG TCTGAACTCGC TTC GCGAGTGCAGC TTTGGGTTCTTATTC TERM 431 511389 - 511411 + T 73 -12 -2.92425 | opp_overlap 511339, overlap 511388 511381 GCTTCCGGCCACCGT CTGAACTCGC TTC GCGAGTGCAG CTTTGGGTTCTTATT TM1040_3480 512116 - 511757 - | response regulator receiver protein TERM 432 512323 - 512350 + r 91 -14 -3.72695 | opp_overlap 512323 GGGGGCAGGTGCAAA CGCGCGCAGCCC TGAT GCGCGGCGCGCG TTTGATGCGGCGCGT TERM 433 512350 - 512323 - R 86 -14 -3.57144 | opp_overlap 512323 GGGGGCAGGTGCAAA CGCGCGCAGCCC TGAT GCGCGGCGCGCG TTTGATGCGGCGCGT TM1040_3481 513432 - 512374 - | ABC transporter related TM1040_3482 514279 - 513488 - | IclR family transcriptional regulator TM1040_3483 514420 - 515673 + | extracellular solute-binding protein TERM 434 515718 - 515734 + F 74 -10.8 -3.6135 | overlap 515719 CGCCCGCATCCCCCT GCGGCC ATGTG GGCCGC TTTGCCGATATATTT TM1040_3484 515908 - 516735 + | binding-protein-dependent transport systems inner membrane component TM1040_3485 516735 - 517583 + | binding-protein-dependent transport systems inner membrane component TERM 435 517776 - 517790 + G 72 -12.8 -3.01001 | overlap 517780 CGCCCTTGTCGCTCT GCCCGG AGG CCGGGC TCTCCTTTGAGGGTC TM1040_3486 517580 - 519646 + | glycoside hydrolase, clan GH-D TM1040_3487 519643 - 521358 + | dihydroxy-acid dehydratase TERM 436 521467 - 521479 + G 73 -9.1 -3.86524 | CTTCTTGCGGCAGGG GGCCA AAG TGGCC TTTGTCGGGCGCTCT TM1040_3488 521360 - 522130 + | short-chain dehydrogenase/reductase SDR TM1040_3489 522127 - 523041 + | 2-keto-3-deoxygalactonate kinase TM1040_3490 523050 - 523655 + | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase TERM 437 523958 - 523972 + G 71 -7 -4.18018 | overlap 523960 AACGACGGGCGCGCG GACCCC TGG GGGGGC TTTTGGATCGGAACC TERM 438 524020 - 524009 - g 78 -7.2 -4.59773 | opp_overlap 524008 TTTGAGGCGCAAAAA GGCG CGGG CGCC ATCTATCGCTATTGG TERM 439 524177 - 524195 + G 73 -10.3 -3.56568 | overlap 524187 CCCGAGGATGGCTGG CCTCTGG GAGCA CCAGAGG TGTTTCTGGATCTCA TM1040_3491 523652 - 524497 + | SMP-30/gluconolaconase/LRE-like region TERM 440 525505 - 525488 - g 76 -12.7 -3.28712 | CTGGGCGCCCTACAA CCCGGCA CCCC TGCCGGG CATGGTGCGGCTCTG TM1040_3492 524505 - 526412 + | Beta-galactosidase TERM 441 526508 - 526564 + F 95 -15.1 -3.73953 | opp_overlap 526511, overlap 526509 TCCGTCTGACTGACA TTATCCGCTTGCGTCGCGCGGCTGGCC TTG GTTCAGTCGCGCGGAGTGAGGGGATAG TTTGATCAAGATACT TERM 442 526509 - 526563 + F 86 -16.4 -2.84051 | opp_overlap 526511, overlap 526508 CCGTCTGACTGACAT TATCCGCTTGCGTCGCGCGGCTGGCC TTG GTTCAGTCGCGCGGAGTGAGGGGATA GTTTGATCAAGATAC TM1040_3493 526566 - 527798 + | metallophosphoesterase TERM 443 528348 - 528326 - g 79 -9 -4.17556 | overlap 528339 GAGATTTGGAAGAAA CGCGCCCGCA ACA CGCGGATGCG CGAGCTGAAACGCGC TERM 444 528479 - 528464 - g 73 -10.4 -3.65201 | opp_overlap 528473, overlap 528467 CAACAGGCTGAAGAA GACGCG CGGA CGCGTC GCGATGATCTCAATA TM1040_3494 527798 - 531232 + | hypothetical protein TM1040_3495 531293 - 532558 + | diaminopimelate decarboxylase TERM 445 534413 - 534367 - g 72 -11.5 -3.38768 | CGAGAGCAGCGACAA TGCGATCCAGCTCAGCCAGCA GGACT TGCAGGCCATGATGGACCGCA TCCAGGAGCTGATGG TM1040_3496 532652 - 535303 + | hypothetical protein TM1040_3497 536399 - 535485 - | Zinc finger/thioredoxin putative TERM 446 536241 - 536218 - G 86 -13.8 -3.48276 | opp_overlap 536203 GCGGCGTCGACAGAA CCCGCTTCCG TTGC CGGAGGCGGG GTGGCGGCGCGGGCC TM1040_3498 536625 - 537302 + | ABC transporter related TM1040_3499 537299 - 538192 + | hypothetical protein TM1040_3500 538189 - 538938 + | phospholipid/glycerol acyltransferase TERM 447 538948 - 538974 + G 73 -8.7 -3.90922 | gap 1 CATTGAAGACCTAGA GGCGCTTTACGG GACA CCG-GGAGCGCC TTCTTTACGCAAGGT TM1040_3501 538916 - 539521 + | pyridoxamine 5'-phosphate oxidase-related, FMN-binding TM1040_3502 540084 - 539572 - | hypothetical protein TM1040_3503 540412 - 540098 - | ethyl tert-butyl ether degradation EthD TERM 448 540461 - 540440 - R 100 -18.7 -3.68351 | TGTTGAGGACGCAAA CGGCCCGCC AAGT GGCGGGCCG CTGGTGATGGACGTG TM1040_3504 541899 - 540502 - | dihydrolipoamide dehydrogenase TM1040_3505 542600 - 542040 - | hypothetical protein TERM 449 542406 - 542441 + g 71 -8.8 -3.72695 | overlap 542434 GTAGCTGCGGATGGT TTCGCCGTCGCGCAGC AGAT GCAGCGCGCGGGTGGA TTTGATCACGAGGAT TM1040_3506 543007 - 542597 - | inner membrane protein TM1040_3507 543401 - 543009 - | inner membrane protein TM1040_3508 543925 - 543398 - | hypothetical protein TERM 450 543612 - 543590 - G 71 -5.5 -4.32131 | CGAAAAGAAATCAAA CCCGATATC CGCGC GAAACCGGG CGAGGAAAGCGTTGA TM1040_3509 544376 - 543942 - | hypothetical protein TERM 451 544185 - 544131 - G 100 -18.9 -3.59649 | gap 2 AAATAATGCCGTAAA TGCAACCGCC--CGTCGCGATCTCAAG AAA CTTGAAATCGCGACGCCAGCGCTTGCA ACGACGCTGCCAAAG TERM 452 544329 - 544319 - G 70 -3.2 -4.70879 | CGGAAATTGCAAAAA TGGC GTA ACCA ATGATGATTAACCAA TM1040_3510 545889 - 544384 - | dihydrolipoamide acetyltransferase TERM 453 544684 - 544695 + g 78 -7.2 -4.58395 | overlap 544671 CAGCTTGCCGTCACG GGCG CGCG CGCC TTTTTCGGCAATCGC kgd 548855 - 545904 - | alpha-ketoglutarate decarboxylase TERM 454 549052 - 549026 - R 74 -12.2 -3.19425 | overlap 549027 AAGCAAGCGCAGGAA GGGGGCGGGCAC ATG ATGCCCACCCCG AAGATCATCAGATGA TERM 455 549051 - 549027 - R 81 -15.7 -2.51173 | overlap 549026 AGCAAGCGCAGGAAG GGGGCGGGCAC ATG ATGCCCACCCC GAAGATCATCAGATG TM1040_3512 549984 - 549097 - | succinyl-CoA synthetase (ADP-forming) alpha subunit TM1040_3513 550842 - 550003 - | glycosyl transferase family protein TERM 456 550125 - 550152 + g 84 -3.2 -5.28942 | gap 1, opp_overlap 550112, overlap 550136 GATGCAGGGGCAGAG CGCGCAGCTCGGC CAT GCCCCGCAG-GCG TTTTTGTTTACGGTA TERM 457 550324 - 550296 - G 73 -8.9 -3.98804 | CCAAAGGGGAAACAA GTGGATTGAACAG CAA CTGATCAATCGAC ATCGTAAATGGCCGC sucC 552094 - 550901 - | succinyl-CoA synthetase subunit beta TERM 458 551881 - 551893 + g 74 -6.2 -4.57073 | CGACCGATTTGGTCA GGCG TACGC CGCC TTTTTCACCGGCGTC TERM 459 552496 - 552519 + G 82 -11 -3.94381 | opp_overlap 552478, overlap 552482 GTCTTGCAAGCGTCT CGTGTGCAAG ATGG CTTGCCCACG TTTGTCGACTTCTAT TM1040_3515 552295 - 552765 + | hypothetical protein TERM 460 552852 - 552877 + T 100 -14 -4.57837 | AACGAGTTCTGTGCA GCGCGGGCCA AGTACA TGGCTCGCGC TTTTTCGCAAACTCT TM1040_3516 553734 - 552904 - | hypothetical protein TERM 461 553846 - 553876 + r 100 -14.9 -4.75309 | gap 1, opp_overlap 553819 553851, overlap 553848 553851 GGAGCGTTCTAAGGG CA-TAAGCCCGGCT CAAA AGCCGGGCTTACTG TTTTCTTCAGTTTCG TERM 462 553848 - 553873 + r 89 -17.7 -2.97212 | opp_overlap 553851, overlap 553846 553851 AGCGTTCTAAGGGCA TAAGCCCGGCT CAAA AGCCGGGCTTA CTGTTTTCTTCAGTT TERM 463 553870 - 553851 - R 86 -15 -3.36492 | opp_overlap 553848 553846 553851 GTTCTAAGGGCATAA GCCCGGCT CAAA AGCCGGGC TTACTGTTTTCTTCA TERM 464 553851 - 553870 + r 90 -15 -3.61106 | opp_overlap 553851, overlap 553848 553846 GTTCTAAGGGCATAA GCCCGGCT CAAA AGCCGGGC TTACTGTTTTCTTCA TM1040_3517 554866 - 553904 - | malate dehydrogenase TERM 465 554786 - 554776 - G 73 -4.6 -4.64676 | opp_overlap 554757 554756 CGATGTCGAACAAAA CGAC GTC GCCG AGTTCTTTGAGGGCT TERM 466 555642 - 555684 + G 72 -12.1 -3.03441 | gap 2 TGCATGTTTCGGTGT TGGT-CACAGGC-GGCGCATC AGG GATGCGCCAGCCGGTTCACCA TGTTCACCGATCGTG TM1040_3518 555160 - 555711 + | hypothetical protein TM1040_3519 556047 - 555736 - | hypothetical protein TERM 467 556575 - 556553 - g 81 -7.7 -4.71222 | gap 1 AGAGGAAAAGGAAAA CGCCCGCACA ACAT TG-GCGGACG CGCTGGCGGCGGGGG TM1040_3520 556410 - 557264 + | Citryl-CoA lyase TM1040_3521 557330 - 557878 + | NnrU TERM 468 557906 - 557924 + G 74 -7.4 -4.3739 | opp_overlap 557910 557912 CTATCGTTTTCTGAG CGAAGATG ACA CATCTGCG TTTTGTCACAAGGTG TM1040_3522 557883 - 558086 + | hypothetical protein TERM 469 558275 - 558297 + G 78 -13.4 -3.16556 | opp_overlap 558271 558270, overlap 558264 558265 CCCATGACAACGGCG CGCCGCTGGA GGA TCTGGCGGCG TTCCATATCGTCTTT TM1040_3523 558088 - 559128 + | hypothetical protein TM1040_3524 559224 - 559799 + | phosphoglycerate mutase TM1040_3525 560022 - 560405 + | succinate dehydrogenase subunit C TM1040_3526 560420 - 560791 + | succinate dehydrogenase subunit D sdhA 560816 - 562624 + | succinate dehydrogenase flavoprotein subunit TM1040_3528 562688 - 563497 + | hypothetical protein TERM 470 563541 - 563529 - g 71 -9.1 -3.74693 | CGCCACCTCACCAAA CGCCT GGG AGGCG CTCGGCATCCGGCCT TERM 471 563666 - 563714 + G 80 -10.2 -4.08216 | gap 2, opp_overlap 563656 ACAACTGTCGCCCGA CGCGCGAC-CCGCTCCTGA-GCCA CAA TGGCATCGAGGTCGGCGGCGCGCG TTTTGCAGGCGATCC TERM 472 563922 - 563910 - g 74 -5.5 -4.56597 | CTCGCTTCTGAAAAA GCTGC AGC GCAAC GAGAGTTACCGCGCG TM1040_3529 563494 - 564360 + | hypothetical protein sdhB 564490 - 565269 + | succinate dehydrogenase iron-sulfur subunit TERM 473 565324 - 565349 + T 100 -14 -5.33026 | AGGTCACGAGATTTG CCCCGTAGCC CATGGC GGCTGCGGGG TTTTTGTTTGCGTTC TERM 474 566357 - 566344 - T 72 -9.5 -3.57792 | TGATGCAGGGCCAAA GGGGC GGGA GCCCC CCCTCGCGCATTCCA TM1040_3531 567681 - 566500 - | phytanoyl-CoA dioxygenase TM1040_3532 567761 - 568780 + | LacI family transcription regulator TERM 475 569070 - 569092 + T 90 -14.9 -3.67792 | overlap 569066 CGGGAAGCCTTTCGC GCGCAGCGA TCCCT TCGCTGCGC TTTACATGAGTGTCG TM1040_3533 570311 - 569523 - | phage integrase TERM 476 570206 - 570186 - G 71 -6.7 -4.28111 | CAGACCAGTAAGAAA CGCGCAGGC GAC GATTGCGCG GTCCCGGCGTTGGGC TM1040_3534 570525 - 570791 + | transposase IS3/IS911 TM1040_3535 570824 - 571621 + | integrase catalytic subunit TM1040_3537 575973 - 572581 - | type III restriction enzyme, res subunit TERM 477 572944 - 572975 + g 88 -6.5 -5.00616 | gap 1, opp_overlap 572945, overlap 572945 TTCTAGCTCCTGAAG ATCGGCG-GGCGTA AGTTG TTCGCCGCGCCGAA TTTTTTGGAGAGCGA TERM 478 572945 - 572974 + g 73 -10 -3.60048 | gap 1, opp_overlap 572945, overlap 572944 TCTAGCTCCTGAAGA TCGGCG-GGCGTA AGTTG TTCGCCGCGCCGA ATTTTTTGGAGAGCG TERM 479 573865 - 573849 - G 90 -4.4 -5.43866 | CAATCTTGAAAAAAA CGAGAT TCACG ACCTCG GGCACATCAATGCCT TERM 480 574087 - 574101 + g 80 -11.4 -3.76759 | overlap 574095 TGTCTTTCCAAGCCT GTCGCC TCC GGCGAC TTTGATGCCGTTGGT TERM 481 574662 - 574683 + g 80 -14.5 -3.07192 | overlap 574664 TCTTCAGCAGGTTTG CACTTGCCG CCGT CGGCAAGTG TGTCTTGAAGGCATT TM1040_3538 578069 - 575970 - | protein of unknown function DUF1524 RloF TM1040_3539 579023 - 578094 - | hypothetical protein TM1040_3540 580188 - 579025 - | restriction modification system DNA specificity subunit TERM 482 579495 - 579479 - G 70 -4.4 -4.43477 | gap 1 TTGATTGAATCAAAA GCGA-CC ACCG GGCTCGC TAGATCGGCGACACG TM1040_3541 581759 - 580185 - | N-6 DNA methylase TERM 483 580652 - 580671 + g 77 -8.6 -4.4261 | ACACGCCCGAGGGCA GCTTGATG ATCG CATCGAGC TTTTGATCTTCGACG TERM 484 581853 - 581882 + r 72 -10.1 -3.61398 | gap 1, opp_overlap 581858 TTGCCTTATAAATCT CCAAACAGCGTCGA CAA TCGA-GCTGTTCGG TTCTTGAAGCCGCCA TM1040_3542 583346 - 582228 - | phage integrase TERM 485 582911 - 582891 - G 71 -6.7 -4.28111 | CAGACCAGTAAGAAA CGCGCAGGC GAC GATTGCGCG GTCCCGGCGTTGGGC TM1040_3544 584236 - 583832 - | putative transcriptional regulator TERM 486 586114 - 586129 + r 76 -6.8 -4.68103 | TGTGGTGCCCGGGGG CGGAGG GTTA TCTCCG TTTTGTTCCCGTTAC TM1040_3546 586938 - 586363 - | BRO-like TM1040_3547 589153 - 587243 - | hypothetical protein TM1040_3548 590034 - 589306 - | hypothetical protein TM1040_3549 593316 - 590038 - | HsdR family type I site-specific deoxyribonuclease TM1040_3550 594681 - 593428 - | restriction modification system DNA specificity subunit TM1040_3551 596180 - 594681 - | type I restriction-modification system, M subunit TM1040_3552 596707 - 597282 + | BRO-like TERM 487 597531 - 597516 - T 76 -6.8 -4.68103 | GTAACGGGAACAAAA CGGAGA TAAC CCTCCG CCCCCGGGCACCATT TM1040_3553 598792 - 597614 - | phage integrase TERM 488 598776 - 598747 - G 74 -6.3 -4.5442 | GGCTGAAGTAGAAAA CGCCATCCTTCAC GAAG GTGAACGCAGGCG AAATGGTCTCCGACA TM1040_3554 599191 - 599009 - | hypothetical protein TM1040_3555 600210 - 599188 - | ribonuclease TM1040_3556 600788 - 600207 - | maf protein TERM 489 600899 - 600871 - R 91 -13.2 -4.11773 | opp_overlap 600876, overlap 600861 600876 AAAGAGGTGCCAAAA CAAAAGCCCGGC ACCGG GCCGGGCTCTTA ACATCAAAAGCGAAT TERM 490 600894 - 600876 - R 100 -13.1 -5.07652 | opp_overlap 600876, overlap 600861 600871 GGTGCCAAAACAAAA GCCCGGC ACCGG GCCGGGC TCTTAACATCAAAAG TERM 491 600876 - 600894 + r 75 -13.1 -3.05844 | opp_overlap 600861 600876 600871 GGTGCCAAAACAAAA GCCCGGC ACCGG GCCGGGC TCTTAACATCAAAAG infA 601138 - 600920 - | translation initiation factor IF-1 TM1040_3558 602101 - 601223 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 492 601763 - 601787 + g 70 -10.7 -3.53224 | opp_overlap 601778 ATGCGCGCGTTTGCC TTGGGGGGAGT AGA ACTCCGCCCGA TTTACCGGGCGCGTG TERM 493 602145 - 602166 + r 79 -10.8 -3.91197 | GGCTAGCCTATTGTG CGCGGCTC GAACAG GGGCCGCG TTTGGTGCTTTGTCG TM1040_3559 602782 - 602195 - | hypothetical protein TM1040_3560 603177 - 602782 - | hypothetical protein TM1040_3561 603633 - 603178 - | protein tyrosine phosphatase TERM 494 603348 - 603329 - G 78 -2 -5.055 | TCAAGGTGGAAAAAA CGGGTG AGTTCGAG CGCCCG ACGCTGACTGGCAGG TM1040_3562 604116 - 603637 - | hypothetical protein TERM 495 604387 - 604350 - R 90 -17.8 -3.01712 | opp_overlap 604351 604378 CTTCGGCGCGCAACA GGCTCAGCTGAGCGGA GGGCAG CCCGCTCAGCTGAGCT TTTGTGCATCAGCGG TERM 496 604351 - 604386 + r 100 -20.6 -4.42386 | opp_overlap 604350, overlap 604378 TTCGGCGCGCAACAG GCTCAGCTGAGCGG AGGGCAGC CCGCTCAGCTGAGC TTTTGTGCATCAGCG hisD 605700 - 604396 - | histidinol dehydrogenase TERM 497 605364 - 605330 - G 76 -12.1 -3.34398 | gap 1, overlap 605328 CCTGCCGCGGAAACA GCCGACCAGCGCCACC CGAG GGTTGCGCCG-CCGGC ATCCGTCCAGCTCTT TERM 498 606219 - 606200 - g 93 -7.8 -5.06414 | gap 1, overlap 606202 CGGTCCGAACAAAAA GACGCCGCC CCA GGCGACG-C TGAAGGATAGAGCAG TERM 499 606218 - 606202 - g 89 -11.5 -4.16307 | overlap 606200 GTCCGAACAAAAAGA CGCCGCC CCA GGCGACG CTGAAGGATAGAGCA TM1040_3564 606074 - 606229 + | hypothetical protein TM1040_3565 606235 - 607506 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 500 607652 - 607630 - g 70 -12.7 -2.94144 | gap 1, opp_overlap 607630 607632, overlap 607627 CGGTGACGGAAATGA GCTGGCGCGC TTCG GCGCGCC-GC TTTGCCATATTGCTC TERM 501 607630 - 607652 + G 82 -12.7 -3.67517 | gap 1, opp_overlap 607630 607627, overlap 607632 CGGTGACGGAAATGA GCTGGCGCGC TTCG GCGCGCC-GC TTTGCCATATTGCTC TM1040_3566 607506 - 607982 + | hypothetical protein TM1040_3567 608818 - 608024 - | 3-oxoadipate enol-lactonase TERM 502 608420 - 608448 + g 84 -8.8 -4.57837 | gap 1, overlap 608395 608421 GCGCAGAGTGTCCAT GCGCCGCGTCCAG ATCT CTGG-CGTGGCGA TTTTTGCAGCCGTGT TERM 503 608421 - 608447 + g 76 -12.3 -3.3422 | gap 1, overlap 608395 608420 CGCAGAGTGTCCATG CGCCGCGTCCAG ATCT CTGG-CGTGGCG ATTTTTGCAGCCGTG TERM 504 608937 - 608915 - R 84 -13.4 -3.64822 | opp_overlap 608906, overlap 608917 ACCGGGTCATGTAAA GACGAGGGGC GCT GCCCCTCGTA CTCCCCGGGATATTT TERM 505 608935 - 608917 - R 90 -16 -3.40597 | opp_overlap 608906, overlap 608915 CGGGTCATGTAAAGA CGAGGGGC GCT GCCCCTCG TACTCCCCGGGATAT TM1040_3568 609945 - 608968 - | pyridoxal-5'-phosphate-dependent enzyme, beta subunit TERM 506 609930 - 609944 + g 72 -2.1 -4.74013 | CGGCGGCTTCGATCA TGGCA AGGGA TGTCA TTTTATGTCTTTCAA TM1040_3569 610790 - 609942 - | alpha/beta hydrolase fold TERM 507 610143 - 610160 + g 80 -4.1 -5.12068 | gap 1 ATCAAGTGCGGCGAA CCACGGCC AGA GGCT-TGG TTTTTCTTCCATCTC TM1040_3570 611502 - 610813 - | haloacid dehalogenase, type II TERM 508 610997 - 610977 - G 84 -5.4 -5.00895 | gap 1, opp_overlap 610991 TGGACGAGACAAAAA GAACCTCGG ATTT CCG-GGTCC CAAACCGTTCTCCAA TM1040_3571 611669 - 612097 + | peptidylprolyl isomerase, FKBP-type TM1040_3572 612350 - 613423 + | spermidine/putrescine-binding periplasmic protein-like TERM 509 613453 - 613474 + F 90 -15.1 -3.62096 | opp_overlap 613453 TCATTTCGGATTAAA GGGGGGCGC CTTG GTGCCCCCC TTTGGCATGGTGCCG TERM 510 613474 - 613453 - f 85 -12.9 -3.73224 | opp_overlap 613453 TCATTTCGGATTAAA GGGGGGCGC CTTG GTGCCCCCC TTTGGCATGGTGCCG TM1040_3573 613580 - 614725 + | lytic murein transglycosylase TM1040_3574 615059 - 614751 - | hypothetical protein TM1040_3575 616101 - 615049 - | hypothetical protein TERM 511 615607 - 615630 + g 73 -9.6 -3.85817 | gap 1 CAAGAAGCTCGCGTA GTCTGCCGCCT GCC GGGCGG-AGAC TTTATCAAGCGGGCT TM1040_3576 616508 - 616098 - | hypothetical protein TM1040_3577 617992 - 616505 - | FAD linked oxidase-like TERM 512 618073 - 618057 - H 86 -7.9 -4.86731 | opp_overlap 618070 GGTCTTGAAATAAAA CCGGCCA CGA TGGCGGG TGGATGATAATTCCC TERM 513 619123 - 619156 + G 72 -13.9 -2.53382 | gap 1, opp_overlap 619126, overlap 619144 TGCCCCTCTCTCTGA ACAGC-CAGGTCGCGC AGG GCGCGATCTGCGCTGG TGGCTTGGCGCTGGT TERM 514 619400 - 619434 + G 71 -9.4 -3.84648 | gap 3, opp_overlap 619397 619398, overlap 619407 619431 TATGTGCGCAAAGCG GCGCCC-GCGATGGCGC AACG GCGC-AT-GCTGGGCGC TTTCGTGCTGTTGCA TERM 515 621402 - 621420 + G 78 -4.4 -4.73682 | overlap 621403 GCGGGCTGATTTCTG GCGAGGTG GAG CACCGCGA TTTTGTGTTGTCCAA TM1040_3578 618302 - 621514 + | reductive dehalogenase TERM 516 622809 - 622789 - T 70 -9.7 -3.53343 | overlap 622776 AAGTTGGGGGTGAAA TCCCAGGGC TCA ACCCTGGAA CTGCCTCCAAAACTA TERM 517 623837 - 623818 - T 78 -6.4 -4.77165 | opp_overlap 623822, overlap 623820 623825 CTCTTCAGAACAAAA CACAGACC TACC GGTCTGTC TGGGTCGGTAGCTCA TERM 518 623835 - 623820 - T 73 -9 -4.00512 | opp_overlap 623822, overlap 623818 623825 CTTCAGAACAAAACA CAGACC TACC GGTCTG TCTGGGTCGGTAGCT TERM 519 624172 - 624114 - T 75 -12.5 -2.92442 | overlap 624158 ATCCAATAGATCAGA GGGTTCGATTAGACCTTTGAGACACCC CGCGC GGGTGGTTCAAACGTCCAATCGGACAC TGCGGCAATCGCTTG TERM 520 625053 - 625036 - T 70 -11.3 -3.02043 | AATCCTGTCTGAAGA TCGGAGG ACCA CCTCCGA AGGCTAAGTACTCCT TERM 521 625840 - 625885 + T 74 -10.3 -3.64703 | opp_overlap 625840 625843 625845, overlap 625843 GCGTAGTGTGACATA GAACAGCTCCTCCTTAGACCC CTCG GGGTCATTGGAGGAACAGTTC TTTCGATGAAGCGGG TERM 522 625885 - 625840 - T 74 -12.5 -2.88544 | opp_overlap 625840 625843, overlap 625843 625845 GCGTAGTGTGACATA GAACAGCTCCTCCTTAGACCC CTCG GGGTCATTGGAGGAACAGTTC TTTCGATGAAGCGGG TERM 523 626362 - 626349 - T 74 -4.5 -4.7254 | ACTGTTTATTAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 524 627640 - 627664 + T 71 -8.5 -3.89182 | opp_overlap 627591, overlap 627633 627641 CGCTTCCGGCCACCG TCTGAACTCGC TTC GCGAGTGCAGC TTTGGGTTCTTATTC TERM 525 627641 - 627663 + T 73 -12 -2.92425 | opp_overlap 627591, overlap 627640 627633 GCTTCCGGCCACCGT CTGAACTCGC TTC GCGAGTGCAG CTTTGGGTTCTTATT TM1040_3579 629282 - 628194 - | hypothetical protein TM1040_3580 630824 - 629292 - | hypothetical protein TM1040_3581 632346 - 631198 - | hypothetical protein TERM 526 632453 - 632469 + r 78 -13.7 -3.18264 | opp_overlap 632449 632448 GTTGGGAAAAGGGGC GGGGGTC TTT GACCCCC TTACTGCCTCCGGCG TM1040_3582 632745 - 632527 - | hypothetical protein TERM 527 632802 - 632776 - R 83 -10.1 -4.32951 | ATCTGAATGAAGAAA GGGCGCGAG ACCGTTTCG CCCGCGCCC CCTGAGAGCCATCCG TERM 528 632858 - 632827 - R 73 -8.6 -4.07885 | gap 1, overlap 632828 CATCCGGCCCCAAAA TCCCGCG-CGGCGCT GCC AACCCCGACGCGGGC AAAACTCATACGGCG TERM 529 632857 - 632828 - R 73 -12.1 -3.04517 | gap 1, overlap 632827 ATCCGGCCCCAAAAT CCCGCG-CGGCGCT GCC AACCCCGACGCGGG CAAAACTCATACGGC TM1040_3583 633151 - 632864 - | hypothetical protein TM1040_3584 633935 - 633225 - | hypothetical protein TM1040_3585 635339 - 634104 - | phage integrase TERM 530 634988 - 634974 - G 82 -11.4 -3.90744 | overlap 634985 GTGGGCCTCAAAGAA GCGCTC ACA GAGCGC AGCCACGGTGGGGGC TERM 531 636145 - 636118 - H 95 -13.4 -4.13767 | opp_overlap 636120 GTGTCGATCCCAAAA CAGTCCGGCGTG AACG CCCACCGGACTG TGTCGAGATCCGCAA TERM 532 636189 - 636216 + H 84 -13.4 -3.65812 | overlap 636179 ATTGCTGCCAAGTGG CGTCGGTTCGGC TATC GCCGGATCGGCG TTCTGTTGGAGCGCA TERM 533 636291 - 636267 - H 77 -11.5 -3.55563 | opp_overlap 636273, overlap 636268 636273 ATCGGAGCCCGTAAA GCAAAAGGTCC GGG GGACCTTTTGT AGGGCGTAGCGCTGT TERM 534 636290 - 636268 - H 81 -15 -2.73124 | opp_overlap 636273, overlap 636267 636273 TCGGAGCCCGTAAAG CAAAAGGTCC GGG GGACCTTTTG TAGGGCGTAGCGCTG TERM 535 636285 - 636273 - H 83 -9.1 -4.54727 | opp_overlap 636273, overlap 636268 636267 GCCCGTAAAGCAAAA GGTCC GGG GGACC TTTTGTAGGGCGTAG TERM 536 636273 - 636285 + H 81 -9.1 -4.37886 | opp_overlap 636273 636268 636267 GCCCGTAAAGCAAAA GGTCC GGG GGACC TTTTGTAGGGCGTAG TERM 537 637014 - 637026 + G 70 -4.1 -4.67904 | GAACACGCGGATGGA TTAGC CTT GCTGA TTTTTGAGCTTGCTC TM1040_3588 636897 - 637490 + | phage integrase TM1040_3589 637924 - 638838 + | sporulation related TERM 538 638862 - 638835 - f 71 -9 -3.86346 | overlap 638839 CTATGCCGTGACAAA CTGATCTGGGCC GTCC GGCCCGGACCCG CACATCAGATAAGCG TERM 539 639755 - 639740 - g 73 -4.6 -4.71828 | overlap 639743 639744 AGTTCACCAAGAAAA CCATCG CGCG CGAGGG GATCGCCGTCGAGCA TM1040_3590 638899 - 640080 + | Serine-type D-Ala-D-Ala carboxypeptidase TM1040_3591 640077 - 640721 + | thymidylate kinase TM1040_3592 640718 - 641839 + | DNA polymerase III subunit delta' TM1040_3593 641900 - 642703 + | TatD-related deoxyribonuclease TERM 540 643044 - 643058 + G 71 -6.4 -4.24606 | opp_overlap 643043 TGCGCCGACCAAAGC CGATCT CCT GGATCG TTTTGGCTATGCGTT TM1040_3594 642703 - 643500 + | beta-lactamase-like TERM 541 643721 - 643742 + G 73 -5.1 -4.62069 | overlap 643722 ACCTCCAATCCGGCT TTGATCCGC GCTT GCTGATCAG TTTTTACACTGGCGC TERM 542 644058 - 644076 + G 82 -12.4 -3.61654 | CAAGAACAACCTGAT CCTCGCCA TAC TGGCGGGG TTTGCGGTAAATCTC TM1040_3595 643537 - 644469 + | auxin efflux carrier TM1040_3596 644593 - 645138 + | redoxin TERM 543 645164 - 645187 + T 100 -18.2 -5.34555 | opp_overlap 645158 TCGATGAGATGCAGA GCCCCGCAAG CTGT CTTGCGGGGC TTTTTTGTGATGTAG TM1040_3597 646596 - 645205 - | hypothetical protein TERM 544 645512 - 645499 - G 77 -3.7 -5.00616 | GGTTGCGGCAAAAAA GCCTC GTTC GTGGC AGCGGATTTCGACGC TM1040_3598 648158 - 646593 - | gamma-glutamyltransferase 1 TERM 545 648017 - 648007 - G 72 -2.4 -4.77567 | ACGCCTACAACAAAA GAGG TCG CCAC TGCTGCATCCACCGC TM1040_3599 649138 - 648155 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 546 648933 - 648943 + g 73 -4.6 -4.62069 | TCCACAAGTACCTGA CCCG AGG TGGG TTTTTCCAGTCCAAG TM1040_3600 650130 - 649135 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TM1040_3601 651030 - 650134 - | binding-protein-dependent transport systems inner membrane component TERM 547 650726 - 650706 - G 91 -13.3 -3.90318 | CGATCACGCCAGAAA TCAGCGCAG CGA CTGCGCCGA TCAGAAGCGAAACCC TERM 548 650839 - 650826 - G 72 -2.3 -4.82901 | TGCCGCCCAGAAAAA CAGGG GGTA CCATG CGGTTCATCAGGCTT TM1040_3602 651949 - 651032 - | binding-protein-dependent transport systems inner membrane component TM1040_3603 653573 - 652050 - | extracellular solute-binding protein TERM 549 652092 - 652075 - G 74 -7 -4.39426 | GACATGTCCACAAAA CGCAGA ACTTCG TCTGCG GTGGGCGTGTAGCTC TERM 550 652879 - 652906 + g 70 -3.4 -4.64766 | overlap 652881 TCTGCCATCTGAGTA TTGACGTCTGGA ATGG TGCGGATGTCGA TTTTTGCGATCTCCG TERM 551 653868 - 653855 - g 83 -5.2 -5.0538 | CGGGATTGGAAAAAA GCGC GGTGCA GCGC TTGGCGTATACGTTG TERM 552 654257 - 654245 - g 71 -7.7 -4.11216 | CCGCGACGCCCAAAA CGATC ATA GATCG TGACGTGATTGCGCA TM1040_3604 653725 - 654486 + | IclR family transcriptional regulator TERM 553 654539 - 654571 + F 76 -13.4 -2.74371 | gap 1, overlap 654538 GCCTACCGCCCCGAG CGCGCGGTGAGCAGG CAAG CCTGCGCGCC-CGCG TGATATTGAGCGATT TERM 554 655281 - 655300 + G 76 -12.2 -3.34398 | overlap 655279 ATGGCTGATTTCCGA CGAGGTCT ATGA AGACCTCG TGTTTGACGGCAACA TM1040_3605 654670 - 655857 + | aminotransferase TM1040_3606 655964 - 657247 + | UDP-glucose/GDP-mannose dehydrogenase TERM 555 657311 - 657326 + G 70 -10.4 -3.53012 | CACCATTGGCATGGC CCCCTC GCCA GAGGGG TTTGCCCCCAAAACA TERM 556 657803 - 657819 + G 70 -3.6 -4.65895 | opp_overlap 657785, overlap 657804 CGCCCCCCTCCGGGC GGCCGA AACTC TCGGCA TTTTTGAATACGGCG TM1040_3607 657267 - 658217 + | asparaginase TERM 557 658899 - 658909 + G 74 -3.2 -4.8083 | CCTGGCAATTGTCAC CGGT TTC ATCG TTTTTGGTGGTATTC TM1040_3608 658318 - 659745 + | amino acid carrier protein TERM 558 659783 - 659760 - T 81 -13.8 -3.30969 | opp_overlap 659760, overlap 659755 AGCCATTAAATCCAA CAGGTCGCCC AATT GGGCGGCCTG TTCTTTATCGTGAGG TERM 559 659760 - 659783 + T 100 -16 -4.11183 | opp_overlap 659760 659755 AGCCATTAAATCCAA CAGGTCGCCC AATT GGGCGGCCTG TTCTTTATCGTGAGG TM1040_3609 660702 - 659788 - | RpiR family transcriptional regulator TM1040_3610 664488 - 660766 - | PEP-utilising enzyme, mobile region TERM 560 663285 - 663260 - G 74 -6.7 -4.33417 | overlap 663262 GCGATCCACAAGAAA CCGCCCGCAAC CTCT GCTGCGGCCCG CTCGGCGGCTTGCAA TERM 561 663390 - 663376 - G 100 -12.8 -4.37092 | opp_overlap 663389 ATGTTGTGCATAAAA CGCGCG GAT CGCGCG CGCCTTGCGCATCGG TERM 562 663389 - 663422 + g 85 -8.8 -4.58395 | opp_overlap 663376 AACGCGCGGATCGCG CGCGCCTTGCGCAT CGGGTC ATGGGCGAGTCGCG TTTTTAGCGCCTCCA TM1040_3611 664980 - 665789 + | phosphonate-binding periplasmic protein TERM 563 666249 - 666264 + G 78 -4.6 -4.78848 | TGATGTATCGACGCC CCGTCG AGTT CGAGGG TTTTGTCTTTGGCAC TM1040_3612 665882 - 668194 + | periplasmic sensor hybrid histidine kinase TERM 564 668215 - 668244 + T 74 -10.8 -3.65046 | opp_overlap 668183 668214, overlap 668193 GCAGCCTCGCAAGAC GCT-GCGCCGCTCA TCCT TG-GCGGCGCAAGC TTCTTCCGATCAGGG TM1040_3613 669037 - 668225 - | hypothetical protein TM1040_3614 669783 - 669034 - | ABC transporter related TERM 565 669290 - 669268 - G 76 -14.9 -2.50016 | overlap 669267 669265 GCTCACCATTAACAC TGCGCAGCC GATCT GGCTGCGCA CAGAGGCAATCTTCT TERM 566 669540 - 669523 - G 77 -11.3 -3.65314 | CGGAAGGCTCAAGAA CCGCTCA ACCG TGAGCGG GAGTGTGGGGTCGAT TM1040_3615 670259 - 669789 - | ferric uptake regulator family protein TERM 567 670659 - 670710 + G 72 -2 -4.72986 | gap 1, overlap 670660 670661 GATGCGCATGTGGTG TC-CCTACTCGCGGCACCGCAGACG ATG CGGCTTGAGTTCCGCGAGGGGGTGG TTTTTGGTGGGGCTG TM1040_3616 670359 - 671495 + | periplasmic solute binding protein TERM 568 671604 - 671579 - f 79 -10.3 -3.94868 | opp_overlap 671581, overlap 671573 671581 GAGAATAAAGTCAAA GAGGGGTCGCG GTTT CGCGGCCCCTT TTTCTGTCGCAGCTG TERM 569 671581 - 671602 + F 100 -15.1 -4.96848 | opp_overlap 671581 671579 671573 GAATAAAGTCAAAGA GGGGTCGCG GTTT CGCGGCCCC TTTTTCTGTCGCAGC TERM 570 671602 - 671581 - f 81 -12.9 -3.54626 | opp_overlap 671581, overlap 671579 671573 GAATAAAGTCAAAGA GGGGTCGCG GTTT CGCGGCCCC TTTTTCTGTCGCAGC TM1040_3617 671764 - 672813 + | methionine synthase (B12-dependent) TM1040_3618 672806 - 675547 + | methionine synthase (B12-dependent) TERM 571 675567 - 675590 + F 78 -12.5 -3.32268 | overlap 675557 GCGACCCGTCTTAGG GGGCAATCC GTCGCA GGATTGCCC TTGTAACGGTGGTTG TM1040_3619 675641 - 676090 + | putative thiol-disulphide oxidoreductase DCC TERM 572 676172 - 676184 + G 71 -7.7 -4.07568 | GACATGATCTGACCC TTGCG GCG CGCAA TTTTAGGCGCGCGCA TERM 573 676788 - 676815 + G 71 -9.1 -3.74077 | GGCCGGGCTCGAACT TGCGGTCATGC GCTATG GCTTGGCCGCA TTTGCGTATCTGCGC TM1040_3620 676087 - 677670 + | saccharopine dehydrogenase TERM 574 677718 - 677692 - T 100 -17.3 -4.30034 | opp_overlap 677690 677689, overlap 677682 AAAACCTGACCAAAA GGCCAGCCGCG GAACG CGCGGCTAGCC AGCTTTGTCTCAGAT TM1040_3621 679253 - 677733 - | aldehyde dehydrogenase TERM 575 678185 - 678199 + g 85 -2.8 -5.31545 | CTTCGACGCCGATGG TCAGGT AGG ACATGA TTTTTTCCTGTTGTT TERM 576 679357 - 679378 + r 70 -9.5 -3.53444 | overlap 679358 CGGAGTTCCGGCGCA TCTGTCTCA GCTC TGAGACAGG TTTGGGGAGGAGTGA TM1040_3622 680360 - 679401 - | putative GAF sensor protein TERM 577 680300 - 680320 + g 100 -10.4 -4.76644 | gap 1, opp_overlap 680278 GGCGCGAGCGCGCGG CCGCG-CCC GGAT GGGTCGCGG TTTTTAGTACATGTT pheT 680579 - 682975 + | phenylalanyl-tRNA synthetase subunit beta TERM 578 683006 - 683029 + F 100 -17.4 -4.58773 | opp_overlap 683003 CGTCTGAACTTATTT GGCGCGCCCC TGTT GGGGCGCGTC TTTTCATTTGGTGCG TM1040_3624 683214 - 683663 + | hypothetical protein TM1040_3625 683660 - 684190 + | hypothetical protein TM1040_3626 684353 - 684931 + | hypothetical protein TM1040_3627 685746 - 684940 - | MscS mechanosensitive ion channel TERM 579 685596 - 685610 + g 70 -3.5 -4.71828 | opp_overlap 685584, overlap 685578 685584 AACTGCCGAGAGTTT CGTCA ATTTG TGGCG TTTTGTTGATGCGAT TM1040_3628 687112 - 685988 - | L-alanine dehydrogenase TM1040_3629 687251 - 687712 + | AsnC family transcriptional regulator TERM 580 688122 - 688165 + G 70 -4.5 -4.56597 | gap 1, opp_overlap 688156, overlap 688122 GGCAGAGCTGATCAA GG-TGCAGGATTGGGTGCAG CATAC CGGCGCCAAAGTCTGCATCC TTTTTGAGGGACGCG TM1040_3630 687919 - 688836 + | hypothetical protein TM1040_3631 689022 - 689693 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TM1040_3632 689693 - 689938 + | molybdopterin synthase subunit MoaD TERM 581 690152 - 690117 - g 73 -4.8 -4.68593 | GGCATGACCGAAAAA GCGC-TGGCCAACATC GCGTCA GACGCTG-CCACGCGC TGGGAGCTGACCGAT TM1040_3633 689943 - 690389 + | molybdopterin synthase subunit MoaE TERM 582 690619 - 690632 + T 71 -8.1 -3.96327 | CGAGGACCACATCCT CGCTG TGGG CAGCG TTTATCCTGCGGGAT TM1040_3634 691682 - 690768 - | LysR family transcriptional regulator TERM 583 691834 - 691797 - H 73 -5.6 -4.57569 | gap 2, overlap 691804 GCACGCTTCGAAAAA GAGCGAACAGCCGACTCT GCCG AGGGTCGGCTGG-CG-TC AACAAGGGAGCGTGC TERM 584 691829 - 691804 - H 81 -13.3 -3.32832 | overlap 691797 TCGAAAAAGAGCGAA CAGCCGACTCT GCCG AGGGTCGGCTG GCGTCAACAAGGGAG TERM 585 692173 - 692191 + G 71 -5.8 -4.34402 | opp_overlap 692161, overlap 692174 TGATCGCAAAGTTGC GCGCCACC AAT GGCGGCGG TTTTGATCTGGCCCA TERM 586 692677 - 692723 + G 71 -6.6 -4.15044 | overlap 692677 TGGCGTCCATGGCCT GG-GATACCGGTGGCTGGCAGC TCAAC GCTGACAACC-CCGATATCACC TTTGTTGCACCAAAG TM1040_3635 691965 - 693041 + | extracellular solute-binding protein TERM 587 693065 - 693086 + F 89 -13 -3.91897 | opp_overlap 693060 693056 ACAAAATTCAGTGGA GGGCACCC GTTGCA GGGTGCCC TTTCTCAATCACGAG TERM 588 693196 - 693211 + G 93 -6 -5.55698 | CCGTGTCAGCTTTGA GGTGCC GCAG GGCTCC TTTTTTTCCATTCTA TM1040_3636 693110 - 694219 + | ABC transporter related TM1040_3637 694216 - 695085 + | binding-protein-dependent transport systems inner membrane component TM1040_3638 695082 - 695942 + | binding-protein-dependent transport systems inner membrane component TERM 589 695990 - 695960 - T 87 -9.7 -4.59993 | opp_overlap 695963, overlap 695963 AAAGCGAGAAACAAA GAACGCCGGGG TGGATCTTG CCCCGGCGTTT TGCTTTTGTCGTCAT TERM 590 695987 - 695963 - T 91 -11.4 -4.38748 | opp_overlap 695963, overlap 695960 GCGAGAAACAAAGAA CGCCGGGG TGGATCTTG CCCCGGCG TTTTGCTTTTGTCGT TERM 591 695963 - 695987 + T 100 -13.5 -4.74012 | opp_overlap 695963 695960 GCGAGAAACAAAGAA CGCCGGGGTGG ATC TTGCCCCGGCG TTTTGCTTTTGTCGT TM1040_3639 697565 - 696015 - | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 592 696456 - 696438 - G 91 -13.2 -3.82525 | GAAAACAAGAGAGAA CATGCTCG CTG CGAGCATG GTGGCAAAGATCATC TERM 593 696968 - 696953 - G 70 -10.4 -3.45023 | GTACCACCAGTACAA GCCCTG GGAT CAGGGC CGCGGCAAAGAATTG TM1040_3640 698059 - 697562 - | tripartite ATP-independent periplasmic transporter DctQ TERM 594 697898 - 697888 - G 75 -2.4 -4.91109 | overlap 697889 CCGCCAGCATAAAAA GCGC AGA GTGC ATATAGAGCACGCTC TERM 595 698111 - 698083 - R 100 -14.6 -5.06414 | opp_overlap 698081 698080 698084 CTCTTTCAAGAAAAA GCCGGCGCTC GGTTATTAT GAGCGCCGGC AGATTGGTGTCGGTA TM1040_3641 699212 - 698127 - | twin-arginine translocation pathway signal TERM 596 699232 - 699269 + H 85 -4.2 -5.19275 | overlap 699232 699235 CCAGTCCTCTGTCGG TAG-GTCTGCGATCTGGC GCGC GCCGGAT-GCAGACTCGG TTTTGTTTTGTAGGT TERM 597 699235 - 699265 + H 75 -12.7 -2.93071 | gap 1, overlap 699232 699232 GTCCTCTGTCGGTAG GTCTGCGATCTGGC GCGC GCCGGAT-GCAGAC TCGGTTTTGTTTTGT TM1040_3642 699414 - 700115 + | GntR family transcriptional regulator TM1040_3643 700125 - 700790 + | Crp/FNR family transcriptional regulator TERM 598 700837 - 700809 - f 79 -2.3 -5.28176 | overlap 700811 TGCAGCCACAAAAAA CCGCTTGGGTGAC AAT ATCACTGAAGCTG ACGCGCCAACCGGTT TM1040_3644 700886 - 701098 + | hypothetical protein TERM 599 701285 - 701299 + G 71 -5.6 -4.41348 | overlap 701283 TACTCGGCATGCTGC TCGCGC CCG GAGCGA TTTATTTCGCCACCG TM1040_3645 701101 - 701532 + | protein of unknown function DUF395, YeeE/YedE TERM 600 701817 - 701833 + G 74 -5.7 -4.4891 | CGCTCTTTGGGGTTG GCTGGGG CAT CGCCGGC TTTTGTCCTGGTGCG TM1040_3646 701537 - 701965 + | protein of unknown function DUF395, YeeE/YedE TM1040_3647 701992 - 702876 + | beta-lactamase-like TERM 601 703344 - 703358 + G 71 -5.6 -4.3739 | CAATTTTCTGAGCCA CCCGGT CAT AGCGGG TTTTATCACCGCATC TERM 602 703891 - 703926 + G 86 -13.4 -3.5594 | gap 1, overlap 703876 703875 GCGGCCAATTTAGGG GCCGCCT-TTACCGG TGGCTAC CCGGTGACAGGCGGC TTTGCACGGTCGGTT TM1040_3648 702946 - 704712 + | sulfate permease TM1040_3649 704949 - 705752 + | phosphomethylpyrimidine kinase type-2 TM1040_3650 705749 - 706723 + | glycine oxidase ThiO TM1040_3651 706707 - 706901 + | thiamine biosynthesis protein ThiS thiG 706904 - 707674 + | thiazole synthase thiE 707671 - 708267 + | thiamine-phosphate pyrophosphorylase TM1040_3654 708264 - 709220 + | UBA/THIF-type NAD/FAD binding fold TM1040_3655 709241 - 710176 + | NLPA lipoprotein TM1040_3656 710173 - 710850 + | TenA family transcription regulator TERM 603 711043 - 711072 + G 83 -17.1 -2.54896 | opp_overlap 711040, overlap 711039 ATGGCACCATAACGG CCAGCGACGGGGG CGCA CTCCCGTCGCGGG TGGCTTACATGGCCC TM1040_3657 710847 - 711575 + | ABC transporter related TM1040_3658 711572 - 712309 + | binding-protein-dependent transport systems inner membrane component TM1040_3659 712956 - 712417 - | BioY protein TM1040_3660 713586 - 712996 - | cobalt transport protein TERM 604 713389 - 713376 - G 73 -4.5 -4.63928 | AGATGAGCGCAAAAA TCCAG AGCG CCGGA CGGATTTGTTGCCAC TM1040_3661 714259 - 713579 - | ABC transporter related TM1040_3662 715461 - 714370 - | molybdate ABC transporter ATP-binding protein modB 716150 - 715458 - | molybdate ABC transporter permease protein TM1040_3664 716986 - 716162 - | molybdenum ABC transporter, periplasmic molybdate-binding protein TM1040_3665 717409 - 717669 + | hypothetical protein TERM 605 718097 - 718108 + G 78 -7.2 -4.65916 | GCAGGGTGTGGGTAT CGCC TTTG GGCG TTTTCTTGAAATCGA TM1040_3666 717675 - 719459 + | Na+/solute symporter TERM 606 719507 - 719536 + F 75 -11.4 -3.5394 | opp_overlap 719506, overlap 719508 CCCGTATTTACAGAT GGTCCTGCCCGC TTCAAC GTGGGCAGGACA TTTGACCGAAGGTTT TERM 607 719508 - 719535 + F 80 -14.9 -2.72043 | opp_overlap 719506, overlap 719507 CCGTATTTACAGATG GTCCTGCCCGC TTCAAC GTGGGCAGGAC ATTTGACCGAAGGTT TM1040_3667 719557 - 721377 + | cyclic nucleotide-binding protein TM1040_3668 721382 - 721900 + | hypothetical protein TM1040_3669 721903 - 723342 + | DNA polymerase III, epsilon subunit TM1040_3670 724298 - 723351 - | alpha/beta hydrolase fold TERM 608 723680 - 723641 - G 75 -2 -4.9725 | overlap 723670 AGGCTGAGACAAAAA CCTCCAGGTCCTCCGC GCTGATCA GAGGATCACCCAGAGG CGTCTCGGCGCGGGC TERM 609 724364 - 724346 - H 83 -3.8 -5.26875 | opp_overlap 724346 CGCCTAACCAAAAAA GGTCTCAA AAA CTGACACC TTTGTATGATACACC TM1040_3671 724386 - 725099 + | helix-turn-helix, type 11 TM1040_3672 725233 - 726333 + | zinc-binding alcohol dehydrogenase TERM 610 726512 - 726485 - f 74 -4.2 -4.77173 | gap 1 TCTGCAGAAAACAAA GGACCGTGAAATT TGA AACTTCA-GGACC TCGACATCATCATCA TERM 611 727398 - 727383 - g 72 -2.4 -4.75472 | overlap 727384 GGGAGATGAAGAAAA CCGCCG CCAT CGCCGA AGTGTTTGGCGCACA TM1040_3673 726497 - 727729 + | mandelate racemase/muconate lactonizing-like protein TM1040_3674 727968 - 728249 + | ArsR family transcriptional regulator TERM 612 728238 - 728278 + T 83 -7.8 -4.71186 | gap 3, opp_overlap 728234 728237, overlap 728241 728275 ACCCTGCACAACATC TATTGTAGCTGAGGCCCCG ACCACA CGGGGCCTC-GC-AC-ATA TTTTATGTTAGTCGT TERM 613 728241 - 728276 + T 85 -12 -3.9638 | gap 2, opp_overlap 728234 728237, overlap 728238 728275 CTGCACAACATCTAT TGTAGCTGAGGCCCCG ACCACA CGGGGCCTC-GC-ACA TATTTTATGTTAGTC TM1040_3675 729134 - 728286 - | 5-carboxymethyl-2-hydroxymuconate delta-isomerase TM1040_3676 732325 - 729194 - | cyclic nucleotide-binding protein TERM 614 730735 - 730750 + g 74 -5.4 -4.56597 | gap 1, overlap 730743 TGCGCAGCCACCAGT CCCGCAG CTC CT-CGGG TTTTTCGAACCCGGC TM1040_3677 732480 - 732869 + | hypothetical protein TM1040_3678 733584 - 732994 - | ThiJ/PfpI TM1040_3679 734142 - 733684 - | AsnC family transcriptional regulator TERM 615 735410 - 735395 - g 70 -3.3 -4.68705 | overlap 735408 ACAAGCCCAAGAAAA TGGTA GGCAAA TACCA CGCCGCGGGCGAGCC TERM 616 737106 - 737081 - g 91 -13.4 -3.727 | CGCACTACAGCGAAA CTGAAGCGAC AGAAGA GTCGCTTCAG GACCTGATCAAGCGT TM1040_3680 734296 - 737715 + | 2-oxoacid ferredoxin oxidoreductase TERM 617 737748 - 737789 + T 70 -10.7 -3.34715 | opp_overlap 737738, overlap 737713 737746 737751 TAAACCTCGGGTAGG AGCCGCGCCTCATCTCGTC AACA GGCGGCGTGAGGCGCGTCA TATTTCGGGGGCGTG TERM 618 737751 - 737786 + T 81 -15.4 -2.84325 | opp_overlap 737738, overlap 737713 737748 737746 ACCTCGGGTAGGAGC CGCGCCTCATCTCGTC AACA GGCGGCGTGAGGCGCG TCATATTTCGGGGGC TM1040_3681 738486 - 737812 - | TetR family transcriptional regulator TM1040_3682 738877 - 740649 + | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TM1040_3683 740642 - 742561 + | extracellular solute-binding protein TERM 619 742922 - 742932 + G 71 -6.8 -4.18367 | overlap 742917 742914 TTCTGGTGAACCTCG CAGC GGT GCTG TTTGTCTATATCGTC TM1040_3684 742561 - 743589 + | binding-protein-dependent transport systems inner membrane component TERM 620 744247 - 744279 + G 74 -11.2 -3.53444 | gap 1 CCATCGAAATCCTGC GCAGCCTGCCCGAGC TGCC GCTCTGGCTGGC-GC TTTCAGCAGCGGTCC TM1040_3685 743586 - 744743 + | binding-protein-dependent transport systems inner membrane component TM1040_3686 744740 - 746095 + | L-carnitine dehydratase/bile acid-inducible protein F TM1040_3687 748522 - 746168 - | MscS mechanosensitive ion channel TERM 621 748843 - 748859 + H 76 -3.6 -4.85918 | overlap 748845 GCACATCGCCCGCCA TACGGC CCTGC GCCGTC TTTTCTTGTGTGCTC TM1040_3688 748946 - 750166 + | hypothetical protein TERM 622 750255 - 750269 + G 71 -7 -4.25074 | ACTTGTCGCTCTTGA GGCGGC GGG GCAGCC TTTTGAGATTTGGTC TM1040_3689 750163 - 751407 + | glycosyl transferase, group 1 TERM 623 752116 - 752146 + G 74 -6.7 -4.37092 | gap 1, overlap 752114 GCACCGAGGTCGACG CGCTCATGG-CGCC CTTT GGCGACCGGGTGCG TTTTCTCGGACAGCT TM1040_3690 751404 - 752513 + | glycosyl transferase, group 1 TM1040_3691 752510 - 753094 + | phosphoglycerate mutase TERM 624 753140 - 753165 + G 84 -11.1 -4.09685 | gap 1 GCACCGGGCATCTGT CGCGCGCCCTCA CAT TG-GGGCGGGCG TTTTCGCGACTGGGC TM1040_3692 753091 - 754230 + | hypothetical protein TM1040_3693 754251 - 755009 + | hypothetical protein TM1040_3694 755010 - 755489 + | hypothetical protein TERM 625 755576 - 755598 + T 75 -9 -4.08064 | opp_overlap 755575 755574 TTTGCTGTGCAAATC GCGCTGGGGC GGA GGCCCAACGC TTTTGGGGGCGGCTT TERM 626 755865 - 755843 - T 70 -9.8 -3.53563 | opp_overlap 755845, overlap 755844 AGAGCGGTGTGCAAA GCGCGCGC GCTATCA ACGCGCGC TTTACGACACTGGCG TERM 627 755845 - 755865 + T 81 -12.5 -3.54424 | opp_overlap 755843 755844 AGCGGTGTGCAAAGC GCGCGCGCT ATC AACGCGCGC TTTACGACACTGGCG TM1040_3695 757026 - 755884 - | phosphonate metabolism PhnM TM1040_3696 757079 - 757762 + | hypothetical protein TM1040_3697 758316 - 757744 - | phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN TERM 628 757787 - 757805 + g 74 -13.1 -3.22653 | overlap 757785 TGAGCCTCGACGATT GCGGCGC TGAGC GCGCCGC TGTTGTCGACCTCAT TERM 629 757995 - 758037 + g 70 -3.4 -4.70659 | gap 3, opp_overlap 757971 757989 758013, overlap 758006 758024 CCTGCAACAGAACCG C-GCGCGAGAGGTTCACAAGG ACGC CCGTG-GCGCC-CTCGCGCAG TTTTTCAATGTCGCG TERM 630 758029 - 758013 - G 72 -11.5 -3.32343 | opp_overlap 758006 757995 758024 GCGAGAGGTTCACAA GGACGCC CGT GGCGCCC TCGCGCAGTTTTTCA TM1040_3698 759017 - 758313 - | phosphonate C-P lyase system, PhnL phnK 759858 - 759088 - | phosphonates transport ATP-binding protein TERM 631 759810 - 759823 + g 75 -2.4 -4.93316 | CCGTACAGCCGATGC GATG GCCATA CATC TTTTTGATATTGTTG TM1040_3700 760739 - 759858 - | phosphonate metabolism PhnJ TERM 632 760432 - 760448 + g 72 -2.9 -4.82855 | GGGATGCGGTGGCGG GTCTGGA TGA TCGAGGC TTTTTCGGTTTCCTC TM1040_3701 761957 - 760854 - | phosphonate metabolism TERM 633 761745 - 761733 - G 91 -7.7 -4.7254 | AGCCCGCATCAAAAA GATCG CCT CGATC AAGTCGCCCCGCGAC phnH 762537 - 761962 - | carbon-phosphorus lyase complex subunit TERM 634 762053 - 762028 - G 73 -4.8 -4.62069 | gap 1, overlap 762030 762032 CCCGGAGGTGAAAAA TACATCTACCC CAAGC GGGTAGA-GCA TGGCGTTGCGCTGCA TM1040_3703 762989 - 762537 - | phosphonate metabolism PhnG TERM 635 763301 - 763324 + G 79 -8.8 -4.15044 | gap 1, overlap 763305 GAACAGGGGCTGGTC CACGCGCGGCG CGG CGCCGGG-GTG TTTGTTGCCGCAAAA TM1040_3704 763112 - 763834 + | GntR family transcriptional regulator TM1040_3705 764498 - 763884 - | hexapaptide repeat-containing transferase TERM 636 764614 - 764587 - R 78 -14.2 -2.52464 | opp_overlap 764587 GGCGGTTGTAATGCA GACGCCTCTCAC CCGC GTGAAAGGCGCC TTGCTTCGTAACCCA TERM 637 764587 - 764614 + r 70 -9.8 -3.39895 | opp_overlap 764587 GGCGGTTGTAATGCA GACGCCTCTCAC CCGC GTGAAAGGCGCC TTGCTTCGTAACCCA TM1040_3706 765967 - 764648 - | phosphonate ABC transporter permease TERM 638 764879 - 764869 - G 78 -6.8 -4.58213 | overlap 764870 CAAGGAAGTACAAAA GCTG CGA CAGC AGAACCGGCGTAATC TM1040_3707 766849 - 765971 - | phosphonate ABC transporter permease TERM 639 766953 - 766902 - R 71 -7.8 -4.1585 | overlap 766893 766903 CCAGAAGGCGCAAAA GGGCCACGCATGTGGGGTCCGGGC ATTG GCCCGAACCCCACAAAGGTGAGTG TCGACGCTTAGTTGG TERM 640 766952 - 766903 - R 71 -11.3 -3.09028 | overlap 766893 766902 CAGAAGGCGCAAAAG GGCCACGCATGTGGGGTCCGGGC ATTG GCCCGAACCCCACAAAGGTGAGT GTCGACGCTTAGTTG TM1040_3708 767863 - 766961 - | phosphonate-binding periplasmic protein TM1040_3709 768749 - 767931 - | phosphonate ABC transporter ATP-binding TM1040_3710 769037 - 769717 + | ribulose-5-phosphate 3-epimerase TM1040_3711 770234 - 769944 - | hypothetical protein TM1040_3712 771564 - 770332 - | hypothetical protein TERM 641 771045 - 771014 - G 95 -14.4 -4.11394 | gap 1 ATCGGACGCTCAAAA CTGGGCGCCTC-CAC CGC GCGCGCGGCGCCCAG AACGGCACCCGCAGC TERM 642 771578 - 771596 + r 74 -11.6 -3.29958 | overlap 771576 ATCTCATCCTCCCCT CAGGCGCG TCG CGCGCCCG TCTTCATCTTCTTCC TERM 643 771651 - 771615 - R 72 -10.8 -3.53444 | gap 1, opp_overlap 771629 771632, overlap 771617 771618 TCATCTTCTTCCAAA TATCCCCGCCCGAGGCC GCGC GGCC-CGGGCAGAGCCA GGGCCGCGCTCCTTT TERM 644 771649 - 771617 - R 74 -11.2 -3.34517 | gap 1, opp_overlap 771629 771632, overlap 771615 771618 ATCTTCTTCCAAATA TCCCCGCCCGAGGCC GCGC GGCC-CGGGCAGAGC CAGGGCCGCGCTCCT TERM 645 771648 - 771618 - R 78 -14.7 -2.60496 | gap 1, opp_overlap 771629 771632, overlap 771617 771615 TCTTCTTCCAAATAT CCCCGCCCGAGGCC GCGC GGCC-CGGGCAGAG CCAGGGCCGCGCTCC TERM 646 771629 - 771663 + r 100 -18.4 -3.55761 | opp_overlap 771618 771617 771615, overlap 771632 ATATCCCCGCCCGAG GCCGCGCGGCCCGGGC AGA GCCAGGGCCGCGCTCC TTTCAAAGCTGAATC TERM 647 771632 - 771660 + r 100 -23.1 -2.91144 | opp_overlap 771618 771617 771615, overlap 771629 TCCCCGCCCGAGGCC GCGCGGCCCGGGC AGA GCCAGGGCCGCGC TCCTTTCAAAGCTGA TM1040_3713 773009 - 771666 - | betaine-aldehyde dehydrogenase TERM 648 772061 - 772101 + g 71 -8.9 -3.73224 | gap 1, opp_overlap 772040 772061 CGCCCCCGCAGAGCA CCTCGCCCCCTTGG-GCG GCGGCA CGCTCCACGTGGGCAAGG TTTGCTGCAAGCTGG TERM 649 772978 - 772954 - G 76 -9.1 -4.08216 | CGACCGTCGTCAAAA GCGCGCCGGGC CGA GACCACCGCGC GGTCGACATCCTTCG TM1040_3714 774634 - 773015 - | hypothetical protein TERM 650 773902 - 773885 - G 74 -12.7 -3.24232 | overlap 773883 773870 GCCCGCCGAAACAGA CGCCACC CGCG GGTGGCG CGCCAGCTCGCGCAG TM1040_3715 775264 - 774662 - | hypothetical protein TERM 651 774797 - 774758 - G 78 -7.1 -4.59109 | opp_overlap 774781, overlap 774747 774761 774772 774773 774779 GACACCTTTGAAAAA GAGGACGATGAACACCG CAAACC CGGCGCTGATCGCCATC ATCTGCGGGCTGCGA TERM 652 775075 - 775059 - G 75 -2.2 -5.00616 | overlap 775061 GGCTGCGCGAAAAAA TCGGTC TTCCT GACCCA TGCGGTTTGGGTCCC TERM 653 775157 - 775144 - G 73 -4.5 -4.69868 | gap 1, overlap 775145 ACAGAACAAAAAGAA GCTGCC CCC GGC-GC GGGCCGATGAATCTG TERM 654 775283 - 775252 - G 100 -15.2 -4.56597 | gap 1, overlap 775276 TGGCGGGCCGAAAAA TCCGCCGG-GCCATC AAA GACGACACCGGCGGA AGGTCGGGGAGGTTA TM1040_3716 776240 - 775296 - | hypothetical protein TM1040_3717 776456 - 777235 + | IclR family transcriptional regulator TERM 655 777560 - 777582 + G 77 -3.3 -5.00616 | opp_overlap 777562, overlap 777561 777562 ACGACCAGGTGATCC AACTCGCAG AAGAG CTGCGAGAC TTTTTTGCGCCCGAC TM1040_3718 777265 - 778632 + | hypothetical protein TM1040_3719 779498 - 778782 - | methyltransferase FkbM TERM 656 779622 - 779590 - R 95 -10.6 -4.72272 | gap 1, overlap 779594 GCCCTGCAGGAAAAA GCA-AGCGCAGGCCA TCGT TGGCCTGCACGATGC CGATGAGCTGTGTCT TERM 657 779617 - 779594 - R 91 -14.6 -3.84901 | overlap 779590 TGCAGGAAAAAGCAA GCGCAGGCCA TCGT TGGCCTGCAC GATGCCGATGAGCTG TM1040_3720 780957 - 779668 - | glutamate--ammonia ligase TM1040_3721 782383 - 781124 - | cytochrome P450 TERM 658 782720 - 782730 + G 81 -8.2 -4.59511 | overlap 782703 782726 GCAGATGCACGCGAT GCGG CTG CCGC TTTTTGGGGCCTGTT TM1040_3722 782475 - 783194 + | glutamine amidotransferase class-I TM1040_3723 783810 - 783160 - | GntR family transcriptional regulator TM1040_3724 784063 - 785055 + | phenylacetate-CoA oxygenase subunit PaaA TM1040_3725 785128 - 785412 + | phenylacetate-CoA oxygenase subunit PaaB TM1040_3726 785412 - 786173 + | phenylacetate-CoA oxygenase, PaaI subunit TM1040_3727 786301 - 786777 + | phenylacetate-CoA oxygenase, PaaJ subunit TERM 659 786852 - 786834 - g 78 -4.4 -4.75472 | opp_overlap 786838, overlap 786835 786838 CCGACATCAAGAAAA CCATCCGC GAC GCGGTTGT GGTCACGCTGAAGCC TERM 660 787082 - 787096 + G 81 -8.5 -4.59109 | overlap 787081 ACGGTCGAAGCGATG CCGCC GCAGG GGCGG TTTTTCACCGATCTC TM1040_3728 786791 - 787861 + | ferredoxin TM1040_3729 788006 - 788869 + | aminotransferase TM1040_3730 789027 - 789482 + | hypothetical protein TM1040_3731 789975 - 789799 - | putative lipoprotein TM1040_3732 791391 - 790000 - | argininosuccinate lyase TM1040_3733 791412 - 791975 + | redoxin TM1040_3734 792143 - 792982 + | diguanylate phosphodiesterase TERM 661 793126 - 793158 + F 74 -7.5 -4.258 | opp_overlap 793122 CGCTCCCGAAACGTT CACGGTCACGCGCGT CAA AAGGGCGCGACCGCG TTTGTTCCTGACTGG TM1040_3735 793512 - 794687 + | acetyl-CoA acetyltransferase TERM 662 794724 - 794743 + F 100 -12.8 -5.00388 | AATAGGCAGTTTTTA GGGGCGTC CGCG GGCGCCCC TTTGTTTTTCGTTTC TM1040_3736 794909 - 795631 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 663 795689 - 795665 - f 100 -17.2 -4.7254 | opp_overlap 795665 AGTGCGCATGAAAAA GGGCCGGTTC TTCAC GAACCGGCCC TTGTCATATCCCGTA TERM 664 795665 - 795689 + F 95 -17.2 -3.47078 | opp_overlap 795665 AGTGCGCATGAAAAA GGGCCGGTTC TTCAC GAACCGGCCC TTGTCATATCCCGTA TM1040_3737 795993 - 796931 + | DNA-binding transcriptional activator GcvA TM1040_3738 796938 - 797849 + | hypothetical protein TERM 665 797889 - 797869 - T 91 -11.8 -4.45068 | opp_overlap 797869 797865 797884 AGCTGGAACAAGAAA GGCCCCGC ATCTG GCGGAGCC TTGGCTTCTGGTTCT TERM 666 797942 - 797968 + T 80 -11.6 -3.73775 | gap 1 GCAGTGCGCTCTAGG GC-GCGTCGGC GCAGGG GCCGACGCAGC TTTGATCAGACTGGC TM1040_3739 798141 - 797974 - | hypothetical protein TM1040_3740 799162 - 798374 - | methyltransferase small TM1040_3741 799382 - 799155 - | hypothetical protein TERM 667 800157 - 800147 - g 78 -6.8 -4.62302 | opp_overlap 800147 800146 CAAGACCGGTAAAAA CGTC GGT GACG ATTTCCGCGAGCGCA TM1040_3742 799434 - 800444 + | farnesyltranstransferase TM1040_3743 801330 - 800506 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TM1040_3744 803035 - 801317 - | tetratricopeptide TPR_2 TERM 668 803004 - 802993 - G 71 -7.2 -4.25104 | overlap 802994 CGGTGGTCAGCAAAA GCGC GGCT GCGC AGGTCAAAGAACGGA TM1040_3745 804809 - 803160 - | electron-transferring-flavoprotein dehydrogenase TM1040_3746 805500 - 805045 - | MerR family transcriptional regulator TERM 669 805641 - 805631 - H 70 -3.2 -4.68724 | GGAGGCAAGACAAAA GAAG GAG CCTC AGCGATGTCAGCCAC TM1040_3747 805646 - 806026 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 670 806288 - 806248 - f 75 -12.5 -3.03243 | gap 2, opp_overlap 806251, overlap 806251 AGGTATTTGCCAACA CGACGGCTCGCCCCGCTGC TCTTC GCGGCGGGGCG-GCGG-CG TTCATGAGCATGTGA TERM 671 806251 - 806288 + F 83 -14.8 -3.16191 | gap 1, opp_overlap 806248 806251 TATTTGCCAACACGA CGGC-TCGCCCCGCTGC TCTTC GCGGCGGGGCGGCGGCG TTCATGAGCATGTGA TERM 672 806286 - 806251 - f 76 -13.9 -2.74192 | gap 1, opp_overlap 806251, overlap 806248 TATTTGCCAACACGA CGGCTCGCCCCGCTGC TCTTC GCGGCGGGGCG-GCGG CGTTCATGAGCATGT TERM 673 806491 - 806473 - g 76 -9.6 -4.08216 | overlap 806482 CGATCTGTCGGAAAA CGCAGAAT ATC ACTCTGCG CGTGAGAAGCAGTCC TM1040_3748 806339 - 806809 + | transcription elongation factor GreA TM1040_3749 806846 - 807877 + | hypothetical protein TM1040_3750 807896 - 808414 + | GCN5-related N-acetyltransferase TERM 674 808586 - 808547 - T 79 -12.8 -3.53012 | gap 1, opp_overlap 808574, overlap 808549 808552 808557 TGGTTGTGGTTCAAA TACGACC-ACAGCGCGCCC GTA GGGCGCGCTGCCGGGCCCA AACGGGGGTGGTGGC TERM 675 808584 - 808549 - T 78 -13.2 -3.34398 | gap 1, opp_overlap 808574, overlap 808547 808552 808557 GTTGTGGTTCAAATA CGACC-ACAGCGCGCCC GTA GGGCGCGCTGCCGGGCC CAAACGGGGGTGGTG TERM 676 808580 - 808552 - T 88 -18.1 -2.84325 | opp_overlap 808574, overlap 808549 808547 808557 GTGGTTCAAATACGA CCACAGCGCGCCC GTA GGGCGCGCTGCCG GGCCCAAACGGGGGT TERM 677 808575 - 808557 - T 87 -17.4 -2.8789 | opp_overlap 808574, overlap 808552 808549 808547 TCAAATACGACCACA GCGCGCCC GTA GGGCGCGC TGCCGGGCCCAAACG TM1040_3751 809904 - 808645 - | molybdopterin molybdochelatase TERM 678 808700 - 808678 - G 75 -7.6 -4.2528 | GGCGAAGGGAATAAA TCGCACAGGA TCT CCCGGCGCGA CATCCATCGCCCCAT TM1040_3752 810713 - 809901 - | hypothetical protein TM1040_3753 811225 - 810734 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 679 810808 - 810796 - G 81 -5.5 -4.8048 | CGTCGAGATCAAAAA CCGGA CGG TCCAG ATCGAGCGGCGTATC mobA 811860 - 811225 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 680 811295 - 811279 - G 70 -3.6 -4.60041 | ATTGACGTTGAAAAA CGGATC AAACG GCTCCG CGTCAAAGAGCGCCT TERM 681 811565 - 811552 - G 73 -5.2 -4.58663 | overlap 811553 ATCAGTCGGGAAAAA CGGC GTGTCA GCCG CCACCGTGACAATGG TM1040_3755 812315 - 811857 - | hypothetical protein TM1040_3756 813294 - 812413 - | formate dehydrogenase family accessory protein FdhD TERM 682 812530 - 812512 - G 71 -6.7 -4.17296 | gap 1 GGCCAGACAGACAAA CCGC-TGC CCGC GCATGCGG CCGATCAGAGTCAGC TERM 683 813387 - 813406 + G 74 -7 -4.3953 | opp_overlap 813387 CCGCATTCTGGAAAG GGGTCCGC GACA GCGCGCCC TTTGTTCTGGTTACC TM1040_3757 813350 - 814078 + | AzlC-like TM1040_3758 814075 - 814419 + | branched-chain amino acid transport TERM 684 814519 - 814498 - T 100 -11.5 -4.68601 | ATCTAAAACAACAAA GGGCGCCGC AATC ACAGCGCCC TGATGCCATTTCATA TM1040_3759 815171 - 814548 - | putative lipoprotein TM1040_3760 815335 - 815201 - | hypothetical protein TERM 685 815489 - 815510 + r 74 -4.3 -4.71426 | opp_overlap 815493, overlap 815492 815493 CGTGTAAAAAACAAC AAAAGCGCC CGAA GGCGCCTTG TTTTATTGGTCGGAG TERM 686 815492 - 815507 + r 72 -6 -4.46587 | opp_overlap 815493, overlap 815489 815493 GTAAAAAACAACAAA AGCGCC CGAA GGCGCC TTGTTTTATTGGTCG TERM 687 815506 - 815493 - R 100 -9.5 -5.22104 | opp_overlap 815492 815489 815493 TAAAAAACAACAAAA GCGCC CGAA GGCGC CTTGTTTTATTGGTC TM1040_3761 816594 - 815638 - | hypothetical protein TERM 688 815710 - 815692 - G 76 -10.2 -3.71917 | ATTGGAAAGGCCAAA GCCGCTGC TGA GCATCGGC CGGCTACGCGACTGA TERM 689 815748 - 815760 + g 70 -10.5 -3.54653 | opp_overlap 815730 GTGTCGTCGAGGATC GCCCG CCA CGGGC TTCTCTCATGACGAT TERM 690 816370 - 816349 - G 70 -4.3 -4.54477 | gap 1, overlap 816340 CGAAAACGCATAAAA GGCGCAG-CC CGG GATCAGCGCC ATCATCAGCGACCTC TERM 691 816747 - 816716 - R 100 -16.6 -5.07567 | overlap 816719 TCACATCGCAAAAAA CAACAGGCCGAGGC TGAT GCCCCGGCCTGTCA GAATGAAATTTGGGC TERM 692 816744 - 816719 - R 100 -18.3 -4.63089 | overlap 816716 CATCGCAAAAAACAA CAGGCCGAGGC TGAT GCCCCGGCCTG TCAGAATGAAATTTG TM1040_3762 817871 - 816768 - | 3-isopropylmalate dehydrogenase TM1040_3763 818992 - 817967 - | endonuclease/exonuclease/phosphatase TERM 693 818062 - 818044 - G 82 -12.4 -3.64822 | ACCCTGCGACCGAAA GCCCTGCC GAT GGCAGGAC GTAATCCACCCGCAT TM1040_3764 819819 - 818989 - | hypothetical protein TERM 694 819329 - 819310 - G 73 -10.7 -3.64103 | opp_overlap 819309 819308 GACCCAGACGTTAAA GGCCCCT GAGGAA AGGGGCC AGTTTCGCAATCGGA TM1040_3765 820294 - 821019 + | binding-protein-dependent transport systems inner membrane component TERM 695 821671 - 821706 + G 76 -5.3 -4.67048 | gap 2, overlap 821670 TGTGGTGTTCCTACA GGGCGGACGTGTGGCCG AACA CAGCC-C-CGCCCGCTC TTTCTTTTCCGATCC TM1040_3766 821012 - 821770 + | ABC transporter related SEQUENCE gi|99079841|ref|NC_008044.1| Silicibacter sp. TM1040, complete genome (length 3200938) TERM 1 92 - 78 - g 73 -4.3 -4.71426 | GGTCTACTAAGAAAA CGTTT GCTAA AAACG GTCGGGCAGAACAAC dnaA 45 - 1457 + | chromosomal replication initiation protein TERM 2 1664 - 1651 - f 79 -2.4 -5.25906 | AGAAATCAATAAAAA CCTT GTGTTG AAGG GTAGGAACGTTAATC TERM 3 1936 - 1906 - g 81 -14 -3.29144 | CGAGGTCGTCGACAA GGCGCCCGCACA GGTGGAG CGTGCAGGCGCC ACCACCGTTGCGGCC TM1040_0002 1739 - 2860 + | DNA polymerase III subunit beta TERM 4 2888 - 2904 + F 71 -4.3 -4.57569 | overlap 2890 CGGGTCTGACGGCCC GGCCTCC GGC GGAGGTA TTTTTGAAAAGATGA TERM 5 2890 - 2902 + F 73 -9.1 -3.90316 | overlap 2888 GGTCTGACGGCCCGG CCTCC GGC GGAGG TATTTTTGAAAAGAT TERM 6 2960 - 2981 + G 91 -13.7 -3.85909 | TGTTCATGTCTCACT TCCGCTCGC ATTT GCGGGCGGA TTTGCATTTGGATAC TERM 7 3417 - 3397 - g 70 -4 -4.72272 | gap 1, overlap 3401 CTTTCCTATGAAAAA GCAA-TGCG GGAG CGCAATCGC CTGCTAAAGGACAAC recF 2950 - 4023 + | recombination protein F TM1040_0004 4020 - 4640 + | lysine exporter protein LysE/YggA TM1040_0005 5220 - 4633 - | TetR family transcriptional regulator TM1040_0006 5336 - 5929 + | NAD(P)H dehydrogenase (quinone) TERM 8 6965 - 6953 - g 81 -7.7 -4.59773 | overlap 6956 6960 CGGCATCGCGAAAAA GGAGA AAG TCTCC TTCACCGGCGACGAC TERM 9 7228 - 7170 - g 82 -15.3 -3.13432 | gap 2 GGTAAGATCATCGAA GCGGCTCTG-G-CGCGCGAGGCCGCCCGC AAG GCGCGCGAACTCACACGTCGCAAAACCGC GATGGACGTGAATTT gyrB 6015 - 8432 + | DNA gyrase subunit B radC 9205 - 8429 - | DNA repair protein RadC TERM 10 8627 - 8596 - G 75 -7.9 -4.2558 | gap 1, opp_overlap 8598 8599, overlap 8597 8599 GATTGTGGACTAAAA TCAGGGCGCTGGCG TTGAG CTCCAGCGCCC-GT TTTGCAACCTCTCGC TERM 11 8598 - 8626 + g 89 -12.3 -4.10657 | opp_overlap 8597 8596 8599, overlap 8599 TTGTGGACTAAAATC AGGGCGCTGGCGT TGA GCTCCAGCGCCCG TTTTGCAACCTCTCG TERM 12 8625 - 8599 - G 82 -15.1 -3.13504 | opp_overlap 8599 8598, overlap 8597 8596 TGTGGACTAAAATCA GGGCGCTGGCG TTGAG CTCCAGCGCCC GTTTTGCAACCTCTC TERM 13 8599 - 8625 + g 83 -15.8 -3.06073 | opp_overlap 8597 8596 8599, overlap 8598 TGTGGACTAAAATCA GGGCGCTGGCGT TGA GCTCCAGCGCCC GTTTTGCAACCTCTC TERM 14 9303 - 9278 - R 100 -11.9 -4.7373 | opp_overlap 9284, overlap 9284 TGAGGCTACCAAAAA GAAAAACGCCC CGAA GGGCGTTTTGC ACGTCAAGACGGGCC TERM 15 9284 - 9297 + r 79 -9.5 -4.11216 | opp_overlap 9278 9284 TACCAAAAAGAAAAA CGCCC CGAA GGGCG TTTTGCACGTCAAGA TERM 16 9297 - 9284 - R 100 -9.5 -5.65496 | opp_overlap 9284, overlap 9278 TACCAAAAAGAAAAA CGCCC CGAA GGGCG TTTTGCACGTCAAGA TERM 17 9328 - 9313 - R 74 -11.8 -3.05844 | TTTTGCACGTCAAGA CGGGCC AGAT GGCCCG TCAAAGGGGGGTAAT TM1040_0009 10500 - 9343 - | chaperone DnaJ TERM 18 10528 - 10558 + r 100 -19.1 -3.5393 | gap 1, opp_overlap 10528 10530, overlap 10530 TCTGCCTCAACGAAA GA-GGGCCGGTCCG GGAT CGGACCGGCCCATC TTTGGCCAAGGTGCT TERM 19 10558 - 10528 - R 100 -19.1 -3.90112 | gap 1, opp_overlap 10528 10530, overlap 10530 TCTGCCTCAACGAAA GA-GGGCCGGTCCG GGAT CGGACCGGCCCATC TTTGGCCAAGGTGCT TERM 20 10530 - 10555 + r 100 -21.9 -2.60615 | opp_overlap 10528 10530, overlap 10528 TGCCTCAACGAAAGA GGGCCGGTCCG GGAT CGGACCGGCCC ATCTTTGGCCAAGGT TERM 21 10555 - 10530 - R 100 -21.9 -3.54146 | opp_overlap 10530 10528, overlap 10528 TGCCTCAACGAAAGA GGGCCGGTCCG GGAT CGGACCGGCCC ATCTTTGGCCAAGGT TM1040_0010 12505 - 10577 - | chaperone DnaK TERM 22 12778 - 12819 + G 73 -4.9 -4.67048 | opp_overlap 12778 12781 AGTGCAGGCCCAAAA GGAGCTGATCTCAGCGCTG CGTC CAGTGCTACGGGCGGCCCC TTTATTTTCGCCTGA TM1040_0011 12713 - 13315 + | DNA-N1-methyladenine dioxygenase TM1040_0012 14210 - 13332 - | ABC transporter, permease protein TM1040_0013 14274 - 15071 + | 3'(2'),5'-bisphosphate nucleotidase TM1040_0014 15072 - 15872 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 23 15937 - 15919 - f 79 -13.2 -3.53012 | opp_overlap 15908 15907 GCCTTGGGTCGGAAA CCTGTGAC GCC GTCACAGG ATTGCGATAGAGTTA TM1040_0015 16023 - 16916 + | UDP-glucose pyrophosphorylase TERM 24 16942 - 16969 + F 74 -11.4 -3.2963 | gap 1, opp_overlap 16917 16942, overlap 16947 GTTTTAAACGATCAA GCCTGCTCCCTTT GAA AAAGGGAGT-GGC TTCTGAGAAAATCAT TERM 25 16947 - 16965 + F 70 -11.8 -2.59431 | opp_overlap 16942, overlap 16942 AAACGATCAAGCCTG CTCCCTTT GAA AAAGGGAG TGGCTTCTGAGAAAA TM1040_0016 17017 - 18000 + | UDP-galactose 4-epimerase TERM 26 18157 - 18195 + G 82 -9.6 -4.42619 | gap 1, overlap 18159 CGATGATATTCTCGT GGTGGT-GGTGCTGCGC AATGAA GCGCAGCGCCTACCATA TTTTCTGGAGTATTA TERM 27 18159 - 18193 + G 93 -14.4 -3.81279 | gap 1, overlap 18157 ATGATATTCTCGTGG TGGT-GGTGCTGCGC AATGAA GCGCAGCGCCTACCA TATTTTCTGGAGTAT TM1040_0017 18017 - 19078 + | hypothetical protein TERM 28 19896 - 19878 - g 73 -4.5 -4.63218 | CTGCCCTCAATAAAA TCCCTCT GGTCA AGTGGGA TCGGCGCTATGCCTA TM1040_0018 19217 - 20203 + | hypothetical protein TERM 29 21251 - 21292 + G 76 -5.8 -4.59773 | gap 1, opp_overlap 21251 21252, overlap 21253 TTGAGGATTTTGAAA GCTGGCTG-GCGCGCGC AACCGGTGC GCGCGTGCATGGCCATC TTTTTGCGCCTGAAC TERM 30 21822 - 21804 - g 72 -2.3 -4.7416 | opp_overlap 21805 21807 21815 21816, overlap 21796 21805 21807 GCAAAATCTGAAAAA TCAGGGG ATGCA CCCCTAT TTGATGGGGGATTTC TM1040_0019 20200 - 21900 + | glycosyl transferase family protein TM1040_0020 21907 - 23346 + | hypothetical protein TM1040_0021 23884 - 23420 - | PTS IIA-like nitrogen-regulatory protein PtsN TM1040_0022 24503 - 23940 - | SSU ribosomal protein S30P / sigma 54 modulation protein TERM 31 24400 - 24383 - G 71 -6.3 -4.36914 | gap 1 CGTTGCGGGAGAAAA CGACCTGA GCA TC-GGTCG GTCGGCCTGCGTATT TM1040_0023 24596 - 24820 + | hypothetical protein TM1040_0024 25581 - 24823 - | ABC transporter related TERM 32 25161 - 25103 - G 70 -10.7 -3.48276 | gap 1 TCGGCCGCGAGACAA CG-CGCGATCTCGACCCGGCGCCGTTCG CCAC CGGACAGCGCCAGCGCGGGTGCGCGGCG CAGATGCTCGATCGA TERM 33 25458 - 25415 - G 100 -13.8 -4.87786 | overlap 25416 GCAATGGTATAAAAA CTCGTGGTCTTGCCCGAGCC GTTT GGCCCCAGCAAGGCCACGAC CTCACCGCGGTTCAG TERM 34 25457 - 25416 - G 100 -17.3 -3.51948 | overlap 25415 CAATGGTATAAAAAC TCGTGGTCTTGCCCGAGCC GTTT GGCCCCAGCAAGGCCACGA CCTCACCGCGGTTCA TM1040_0025 26015 - 25581 - | OstA-like protein TM1040_0026 26684 - 26085 - | hypothetical protein TM1040_0027 27371 - 26757 - | 3'-5' exonuclease TM1040_0028 27635 - 29086 + | xylulokinase TM1040_0029 29083 - 30393 + | xylose isomerase TM1040_0030 30394 - 31401 + | aldose 1-epimerase TM1040_0031 31401 - 32708 + | methylamine utilization protein MauG, putative TM1040_0032 34287 - 32737 - | phospholipase D/transphosphatidylase TERM 35 34246 - 34218 - G 70 -3.2 -4.58698 | gap 2, overlap 34220 GCAAAGGAAAAAGAA GCCGTGCGAGCATC ACA AATGC-CGCA-AGC GTAAGGCCAATCAAA TM1040_0033 34629 - 35831 + | sodium/hydrogen exchanger TM1040_0034 36665 - 35895 - | ABC transporter related TM1040_0035 37519 - 36662 - | ABC transporter related TM1040_0036 38433 - 37516 - | binding-protein-dependent transport systems inner membrane component TM1040_0037 39488 - 38430 - | binding-protein-dependent transport systems inner membrane component TERM 36 39186 - 39153 - G 80 -10.9 -3.73968 | overlap 39141 AAAGGTGGCAGGAAA CACGCGGGCGATGTC CTCT GACACCGGGCGCGCG GTCAGAAGCGATTTG TM1040_0038 41088 - 39490 - | extracellular solute-binding protein TERM 37 41099 - 41081 - G 76 -6 -4.58663 | opp_overlap 41080, overlap 41083 ATTAGTTTGGAAAAA GCGTTCAT TTA ATGAACTC CCTGTTTTGATTTGA TERM 38 41123 - 41139 + r 76 -6.5 -4.59414 | opp_overlap 41122 41123 GATTTGATTATAAAC GCCGG TTTTTGC CCGGC TTTTGGTTATTCTCC TM1040_0039 42195 - 41146 - | dipeptidase AC TERM 39 42320 - 42336 + H 76 -3.6 -4.8622 | CTTGGCAAGTATGTA GCGGGA AAAGA TCCGGC TTTTTGGTTCAAGGC TM1040_0040 42535 - 43575 + | alcohol dehydrogenase GroES-like protein TERM 40 43949 - 43962 + G 70 -3.8 -4.58395 | AGACTGGGCGCGCGG GCTC GGGCAG GAGC TTTTTACCGGGTCGA TM1040_0041 43680 - 44879 + | HI0933-like protein TM1040_0042 45442 - 44852 - | glutathione S-transferase-like TM1040_0043 46546 - 45518 - | DNA polymerase III, delta subunit TM1040_0044 47076 - 46543 - | putative lipoprotein leuS 49636 - 47063 - | leucyl-tRNA synthetase TERM 41 49578 - 49591 + g 70 -3.8 -4.64766 | opp_overlap 49574 GCTTGGAAAATGGCA GCCT CTTCCC AGGC TTTTTGCCATCTGGC TERM 42 49680 - 49660 - R 100 -11.1 -4.72272 | opp_overlap 49659 49660 49675 TCCTTTGACTAAAAA CGCCGGG CTTTAGT CCCGGCG CTTCTGATACGTGGT TM1040_0046 50212 - 49724 - | hypothetical protein TM1040_0047 50494 - 51438 + | outer membrane porin TERM 43 51466 - 51489 + F 100 -16 -5.19275 | ACCACTCGGTTCTTG GGGCGGGCTC TTCG GAGCTCGCCC TTTTCTTTTGTGCGT TM1040_0048 51557 - 52213 + | hypothetical protein TM1040_0049 52660 - 52205 - | hypothetical protein TERM 44 52355 - 52331 - G 79 -7.7 -4.57569 | overlap 52334 CCACTGGTGCAAAAA GATCGCCGAGC CCC GCCCGGAGGTC GCATTTGGCCAGTTC TERM 45 52534 - 52507 - G 71 -8.5 -4.07885 | gap 2, opp_overlap 52507 GATCCCCGGGCAAAA TCGGGCGCGCCCA ATCT TGGG-GCGCC-GA GATCCGGTCGGGACG TM1040_0050 53790 - 52702 - | GTP cyclohydrolase II TM1040_0051 53960 - 54646 + | two component transcriptional regulator TERM 46 54752 - 54772 + T 100 -15.4 -5.26316 | CCTCCCTGTCGGACT GGCCGGGC TTCGC GCCCGGCC TTTTTTGTGGCCTCA TM1040_0052 55993 - 54785 - | gamma-butyrobetaine,2-oxoglutarate dioxygenase TM1040_0053 56222 - 57010 + | exodeoxyribonuclease III TERM 47 57079 - 57100 + F 100 -12.3 -5.06414 | opp_overlap 57079 GCTCCCGCCAAAAAA TGCGCACCT AGTC GGGTGCGCA TTTTTGTTGGGCCGG TERM 48 57100 - 57079 - f 100 -11.6 -5.00616 | opp_overlap 57079 GCTCCCGCCAAAAAA TGCGCACC TAGTCG GGTGCGCA TTTTTGTTGGGCCGG TERM 49 57493 - 57471 - g 75 -7.6 -4.2679 | CAACGTCGATGAAAA CCAGCGCCTC GCG GCAGCACTGG CCCAGCAGGGCCTGC TM1040_0054 57235 - 58170 + | thioredoxin domain-containing protein TERM 50 58393 - 58363 - g 83 -15.4 -3.09635 | overlap 58341 ATTGGCATGATCCAA CCGAGCCATGCCCG CAA CGCGGATGGCTCGG GGCTGCATGCCATAG TERM 51 58759 - 58738 - g 71 -6.5 -4.21439 | overlap 58740 GAACCCGAAGACAAA CAGGCGCTT TTGG AAGCGCCAA GCCTGTCGACACGGC TERM 52 58757 - 58740 - g 77 -11.3 -3.69842 | overlap 58738 ACCCGAAGACAAACA GGCGCTT TTGG AAGCGCC AAGCCTGTCGACACG TM1040_0055 58198 - 58842 + | peptidase S16, lon-like TM1040_0056 58839 - 59024 + | hypothetical protein TM1040_0057 60270 - 59044 - | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase TERM 53 59744 - 59756 + g 73 -10.5 -3.61178 | TTGATGCCGGCGCGC GCGGC GGT GCCGC TTTGACGTCCATCCG TERM 54 60005 - 59991 - G 77 -8.5 -4.34771 | opp_overlap 59999 CAAAATGCAGGAAAA GCGGC GAAGG GCCGC GACCGGCAACGCCGT TM1040_0058 60494 - 61825 + | amidase TERM 55 62893 - 62905 + G 73 -4.7 -4.58563 | overlap 62894 62897 CAATGGCTACATGTC ACCCG AAG CGGGC TTCTTTTTGTGGTTG TERM 56 62897 - 62908 + G 81 -4.4 -4.98255 | overlap 62894 62893 GGCTACATGTCACCC GAAG CGGG CTTC TTTTTGTGGTTGCCG TM1040_0059 61934 - 63112 + | aminotransferase TERM 57 63438 - 63450 + G 81 -5.5 -4.77036 | GCTCGGTCAGACGGG CGCGA CGA TTGCG TTTTTGCTGATCACG TM1040_0060 63232 - 66279 + | DNA translocase FtsK TERM 58 66309 - 66289 - f 100 -15.4 -4.42619 | opp_overlap 66289 CAATAGGCGATAAAA GGCCGGGC GGGGT GCCCGGCC TCTTCACATCAGATT TERM 59 66289 - 66309 + F 85 -16.1 -3.0634 | opp_overlap 66289 CAATAGGCGATAAAA GGCCGGGCG GGG TGCCCGGCC TCTTCACATCAGATT TM1040_0061 66347 - 66943 + | outer membrane lipoprotein carrier protein LolA TERM 60 66950 - 66982 + T 100 -15.6 -4.26903 | opp_overlap 66954, overlap 66954 GACCGCTGAACGTTA TAAAGCCCCGCACC CATAA GGCGCGGGGCTTTG TTTTCATCAAGTCAA TERM 61 66978 - 66954 - T 100 -17.1 -3.92522 | opp_overlap 66950 66954 GCTGAACGTTATAAA GCCCCGCACCC ATA AGGCGCGGGGC TTTGTTTTCATCAAG TERM 62 66954 - 66978 + T 100 -14.2 -4.72007 | opp_overlap 66954, overlap 66950 GCTGAACGTTATAAA GCCCCGCACC CATAA GGCGCGGGGC TTTGTTTTCATCAAG TM1040_0062 67589 - 67002 - | hypothetical protein TERM 63 67862 - 67892 + G 72 -2.5 -4.81551 | gap 1, opp_overlap 67874, overlap 67872 67874 CTTGGCCAGGTCGTC CGTCATCGC-AAAC ACCC GTTCCGCGGTGTCG TTTTTGATGTCGATC TM1040_0063 67820 - 68146 + | hemimethylated DNA-binding region TERM 64 68144 - 68181 + T 71 -6.9 -4.25104 | gap 1, opp_overlap 68134 68147, overlap 68145 68147 CAATACCAGTTGAAC TGATG-GGGACGCCGGGT GTG GCCCGGCATCCCGCGTGG TTTTAGTAACCGAGC TM1040_0064 69761 - 68184 - | gamma-glutamyltransferase 2 TM1040_0065 70509 - 70069 - | putative anti-sigma regulatory factor, serine/threonine protein kinase TM1040_0066 70887 - 70543 - | anti-sigma-factor antagonist TM1040_0067 70985 - 72157 + | Acetyl-CoA C-acetyltransferase TERM 65 72176 - 72196 + F 100 -11.1 -5.00895 | opp_overlap 72175 72177, overlap 72177 CTTGCGATCATCAAG ACGGCGCAA ATT TTGCGCCGC TTTTTATATGCTCAG TERM 66 72177 - 72195 + F 86 -14.6 -3.59814 | opp_overlap 72175 72177, overlap 72176 TTGCGATCATCAAGA CGGCGCAA ATT TTGCGCCG CTTTTTATATGCTCA TERM 67 72195 - 72177 - f 81 -14.6 -3.17051 | opp_overlap 72177 72176, overlap 72175 TTGCGATCATCAAGA CGGCGCAA ATT TTGCGCCG CTTTTTATATGCTCA TM1040_0068 72257 - 72724 + | putative GAF sensor protein TERM 68 72934 - 72952 + G 89 -4.5 -5.24129 | CGTGACGGCCTTGAT CGCCG CATCCCCCA CGGCG TTTTTTATCGCCAAG TM1040_0069 72740 - 73369 + | lysine exporter protein LysE/YggA TM1040_0070 73397 - 73768 + | glutathione-dependent formaldehyde-activating, GFA TERM 69 74453 - 74465 + G 81 -6.2 -4.72986 | GTCTCTGCCAATCGG GCCC AACCA GGGC TTTTTGCTGGAGGTG TM1040_0071 73920 - 74855 + | rarD protein TM1040_0072 74929 - 75582 + | ribosomal large subunit pseudouridine synthase A TM1040_0073 76279 - 75566 - | AraC family transcriptional regulator TERM 70 76171 - 76139 - G 73 -4.7 -4.66833 | overlap 76155 TTGCAAGCGCAAAAA CTTGCCGCAGATCAC ACC GGGATCCGGGACCAG GCAAAGGCTGCGCAC TERM 71 76401 - 76380 - R 100 -17.3 -5.06414 | opp_overlap 76370 TCGTGTCAACAAAAA GAGCCGCCC CAGA GGGCGGCTC CTGATGCGATGTCTG TM1040_0074 77863 - 76421 - | aldehyde dehydrogenase TERM 72 77028 - 77059 + g 73 -10.2 -3.57309 | gap 1, overlap 77028 77053 77054 GCGTTGCAGCTCTGA C-CGGTGTTCTGCAT CAT ATGCAGCACGCCGCG TTTCACGGCCTTTTC TM1040_0075 78109 - 78759 + | 1-Cys peroxiredoxin TERM 73 78786 - 78808 + T 100 -14.9 -4.66163 | opp_overlap 78786 GCACCAAAGATCAAA GCCACCGCA TTTCT TGCGGTGGC TTTTTGCCTGCAGGT TERM 74 78808 - 78786 - T 95 -14.9 -4.02719 | opp_overlap 78786 GCACCAAAGATCAAA GCCACCGCA TTTCT TGCGGTGGC TTTTTGCCTGCAGGT TM1040_0076 79999 - 78842 - | lipopolysaccharide biosynthesis protein-like TERM 75 79931 - 79915 - G 83 -4.3 -5.07652 | overlap 79917 TCCGCGAAAACAAAA GGCTCGC AAG ACGAGGC CCAATGTTCTTTAGC TM1040_0077 80933 - 80070 - | glycosyl transferase family protein TERM 76 80974 - 81001 + r 73 -12.7 -2.70022 | opp_overlap 80975, overlap 80973 CGCGGCCCATAAAAA ATGCCCGGGAG ACATCG CTCCCGGGCAC CTTATGTCAGATCAG TERM 77 81000 - 80975 - R 100 -16.2 -5.24129 | opp_overlap 80974 80973 GCGGCCCATAAAAAA TGCCCGGGAG ACATCG CTCCCGGGCA CCTTATGTCAGATCA TM1040_0078 83170 - 81035 - | polynucleotide phosphorylase/polyadenylase TERM 78 81575 - 81596 + g 91 -7.9 -4.84363 | overlap 81565 GATGTGCAGGCGGCC CGCTTTGGC CTGA GCCAGCGCG TTTTTCATGATTTCA TERM 79 82206 - 82226 + g 70 -4.5 -4.57569 | opp_overlap 82168 ACCTGATCCAGGGCA CGACCGTCG ATG CGGCGACCG TTTTTCACAACGTCG TERM 80 82966 - 82943 - G 85 -8.8 -4.58395 | gap 1, opp_overlap 82942 TTCACGTTTGAAAAA GCCGCCCGGAA TCT TACCG-GCGGC GTAGTATTTTTCCTG TM1040_0079 83552 - 83364 - | hypothetical protein TM1040_0080 84841 - 83627 - | cobalamin synthesis protein, P47K TERM 81 84951 - 84976 + r 100 -16.9 -4.15222 | gap 1, opp_overlap 84951 CGCGCGCATAAAAAA CGCCCGCTCCCA AGG TGGG-GCGGGCG TTTCTTGACCGAAGT TERM 82 84976 - 84951 - R 100 -16.9 -5.24129 | gap 1, opp_overlap 84951 CGCGCGCATAAAAAA CGCCCGCTCCCA AGG TGGG-GCGGGCG TTTCTTGACCGAAGT rpsO 85274 - 85005 - | 30S ribosomal protein S15 TERM 83 85106 - 85130 + g 90 -4.9 -5.35222 | opp_overlap 85109 85111, overlap 85111 GAGCAACCATTTTCA GAAGACCACGG CGG CCATGGTTGTC TTTTTTGTGGGTTTT TM1040_0082 86606 - 85539 - | type I secretion target repeat-containing protein TM1040_0083 87231 - 86710 - | hypothetical protein TERM 84 87336 - 87380 + r 100 -19.6 -4.26622 | gap 1, opp_overlap 87338, overlap 87316 87313 GGGCGGGAAGGTCAA TACGTCTGACCCATTGTTTCG CGTG CGAAACAATGGGTCAG-CGGA TTTTCCCTATACTTT TERM 85 87378 - 87338 - R 100 -22.2 -3.09492 | gap 1, opp_overlap 87316 87313 87336 GCGGGAAGGTCAATA CGTCTGACCCATTGTTTCG CGTG CGAAACAATGGGTCAG-CG GATTTTCCCTATACT truB 88368 - 87460 - | tRNA pseudouridine synthase B TM1040_0085 89199 - 88426 - | hypothetical protein rbfA 89599 - 89204 - | ribosome-binding factor A TM1040_0087 89693 - 90502 + | dihydrodipicolinate reductase TERM 86 90655 - 90667 + T 72 -10.5 -3.40299 | GCCCGCAGGGAGCGA GGGGC AGA GCCCC TTGTGGCTGTGCTCA TM1040_0088 90891 - 90697 - | hypothetical protein TM1040_0089 90990 - 92264 + | Fmu (Sun) TERM 87 92439 - 92429 - f 73 -8.2 -4.07687 | ATCCTCCCGCCAAAA CGCC AAA GGCG CGTGAGGCAAGAGAG TM1040_0090 92456 - 94201 + | heparinase II/III-like TERM 88 94455 - 94434 - g 70 -5.1 -4.56775 | gap 1 ATGGCCGCGTAAAAA CCCTGCATCC GAT GG-TGCATGG CGGCCTTCTGGCTCT TERM 89 95438 - 95458 + G 73 -9.8 -3.6502 | opp_overlap 95438 95440 AAGGCACCGACCGAA GAGCAGAT GGCGG ATCTGCTC TTTGCCTGGAAGGTC purH 94226 - 95815 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TM1040_0092 95835 - 96317 + | signal peptidase II TERM 90 96351 - 96308 - f 78 -4.5 -5.00884 | gap 1, overlap 96349 AGGCCGCGCAAAAAA GCCCGCGTGACCTCCTGCGC GATAT GCGCTAGAGGT-ACAGAGAC CGTCTGGGCCTGCGG TM1040_0093 96470 - 96976 + | hypothetical protein TM1040_0094 97110 - 98543 + | peptidase M16-like TERM 91 99340 - 99358 + G 74 -11 -3.53012 | overlap 99337 AGTCCTGTTGACCGG GGGGACCA CCG TGGTTCCC TTTGCAACGCCGCAA TERM 92 99506 - 99474 - g 74 -11.3 -3.53012 | GTGGGTCGTTTGAAA CCCGCCTGATGCA AGAGGTA CGCACCAAGCGGG GCCTCACCTACGGTG TM1040_0095 98540 - 99913 + | peptidase M16-like TERM 93 99976 - 99935 - T 90 -15.7 -3.53444 | opp_overlap 99936 99941, overlap 99936 99940 GCACGTGGTTTGAAA TCGAATGCGGCGCGGTCCC AGGT GGGGCCGCGCCGCTTTGGT TTTGTGGTGGTCTCA TERM 94 99975 - 99936 - T 91 -19.2 -2.71924 | opp_overlap 99936 99941, overlap 99935 99940 CACGTGGTTTGAAAT CGAATGCGGCGCGGTCCC AGGT GGGGCCGCGCCGCTTTGG TTTTGTGGTGGTCTC TERM 95 99936 - 99975 + T 100 -21.4 -4.49981 | opp_overlap 99935 99936 99940, overlap 99941 CACGTGGTTTGAAAT CGAATGCGGCGCGGTCCC AGGT GGGGCCGCGCCGCTTTGG TTTTGTGGTGGTCTC TERM 96 99971 - 99940 - T 95 -18.6 -3.27525 | opp_overlap 99936 99941, overlap 99936 99935 TGGTTTGAAATCGAA TGCGGCGCGGTCCC AGGT GGGGCCGCGCCGCT TTGGTTTTGTGGTGG TERM 97 99941 - 99970 + T 100 -24.3 -4.28487 | opp_overlap 99940 99936 99935, overlap 99936 GGTTTGAAATCGAAT GCGGCGCGGTCCC AGGT GGGGCCGCGCCGC TTTGGTTTTGTGGTG TM1040_0096 102360 - 100018 - | aldehyde dehydrogenase TERM 98 100339 - 100327 - G 71 -9.1 -3.83205 | AGCCGCCAGAGGAAA GGCCT CTG AGGCC GCGAGCACCACGCGG TERM 99 100513 - 100564 + g 72 -12.2 -3.01001 | gap 1, opp_overlap 100528, overlap 100523 100525 GTATTTGTCGGCCCA GGCTGCGGCAGA-GAAGAGGCGTTG CAG CGACGCCTCGACCTCTGCGGCGCCC TCTCCTTTGCCGGTC TERM 100 100548 - 100528 - G 74 -11.1 -3.48276 | opp_overlap 100513 100523 100525 GGCTGCGGCAGAGAA GAGGCGTTG CAG CGACGCCTC GACCTCTGCGGCGCC TERM 101 101972 - 101954 - G 73 -8.8 -3.85698 | opp_overlap 101968 GCGTGGTGGTAGAAA TGGCGCTG GAC CAGCGGCA CGTCGATATCGCGGC TM1040_0097 103426 - 102371 - | deoxyribose-phosphate aldolase TERM 102 102851 - 102817 - G 73 -9.3 -3.86346 | TCATCTCGTCATAAA GCGCCTGCCA-GTCCCC CGA GAGCACATGGC-GGCGC GAGATCACAATGTCG TERM 103 103544 - 103558 + H 77 -7.2 -4.4078 | AAAAACGAAGTTATG TGAGAA TAA TTCTCA TTTTCATTGACGAAG TM1040_0098 103637 - 104599 + | twin-arginine translocation pathway signal TERM 104 105189 - 105178 - g 76 -5.8 -4.65895 | GCGGCCACGGAAAAA GCCA TCAT TGGC GTCCTCAAGGCTCTG TM1040_0099 104599 - 105405 + | ABC transporter related TERM 105 106490 - 106546 + G 79 -15.7 -2.79796 | opp_overlap 106532, overlap 106492 AAGGCGCTGCGCGAT GAGCGCCGCTGGGACATCCTGCGCC GCGATCA GGCGCAAGAAGCGGCGGCGGCGCTC TATGATGGGCTGCGC TERM 106 106492 - 106544 + G 70 -12.5 -2.94747 | opp_overlap 106532, overlap 106490 GGCGCTGCGCGATGA GCGCCGCTGGGACATCCTGCGCC GCGATCA GGCGCAAGAAGCGGCGGCGGCGC TCTATGATGGGCTGC TM1040_0100 105437 - 106639 + | hypothetical protein TERM 107 106907 - 106963 + G 73 -10.8 -3.61398 | gap 1, overlap 106924 CGTCTCGGGCGGATT GAGCCCG-GCGCGGCAATGGGCGTTGT GTTC ACCACGCTCTTTGCTGCGGGTGTGCTC TTGTTGGAGCAGAGC TM1040_0101 106640 - 107566 + | hypothetical protein TERM 108 108144 - 108159 + G 78 -2.5 -5.04249 | TCCGGCAGGGTAGCA TCGTG GAGCTG CGCGA TTTGTTTTTTGCAAC mutL 107657 - 109591 + | DNA mismatch repair protein TERM 109 110758 - 110738 - g 76 -12.5 -3.30441 | opp_overlap 110734, overlap 110728 110739 GATCAGCGCCGACAA GGCTGGGCG ACG CGCCCAGCG GCTAGATAATTTTGA TERM 110 110757 - 110739 - g 78 -16 -2.5805 | opp_overlap 110734, overlap 110728 110738 ATCAGCGCCGACAAG GCTGGGCG ACG CGCCCAGC GGCTAGATAATTTTG TM1040_0103 109602 - 110837 + | hypothetical protein TM1040_0104 110834 - 112147 + | adenylate/guanylate cyclase TM1040_0105 112226 - 112549 + | hypothetical protein TERM 111 112571 - 112600 + T 81 -13.5 -3.3062 | opp_overlap 112573, overlap 112563 112573 GCGGTTGCATACAAA AAGCCCCGCCAGC GGGT GCTGGCGAGGCTA TTGATAGTGTTTGCG TERM 112 112573 - 112598 + T 85 -16.1 -3.21378 | opp_overlap 112573, overlap 112571 112563 GGTTGCATACAAAAA GCCCCGCCAGC GGGT GCTGGCGAGGC TATTGATAGTGTTTG TERM 113 112598 - 112573 - T 100 -18.3 -4.96848 | opp_overlap 112573 112571 112563 GGTTGCATACAAAAA GCCCCGCCAGC GGGT GCTGGCGAGGC TATTGATAGTGTTTG TM1040_0106 113774 - 112632 - | saccharopine dehydrogenase (NADP+, L-glutamate forming) TM1040_0107 114856 - 113804 - | saccharopine dehydrogenase (NAD+, L-lysine-forming) TM1040_0108 115482 - 114868 - | glutathione S-transferase-like TM1040_0109 116159 - 115503 - | phosphoglycerate mutase TM1040_0110 116500 - 116273 - | hypothetical protein TM1040_0111 117308 - 116589 - | two component transcriptional regulator TERM 114 116623 - 116655 + g 76 -5.6 -4.66953 | gap 2, opp_overlap 116623 CCTAGAAAGATATAT CCAGCGCCGTAGATCG TCT TGATC-A-GGCGCGGG TTTTTAGGATCTTCG TM1040_0112 119205 - 117301 - | PAS/PAC sensor hybrid histidine kinase TERM 115 120081 - 120093 + G 70 -10.5 -3.47078 | opp_overlap 120043 TCGGGCACCACGGGG CGCCC CAA GGGCG TTGTGCTGTCCAATC TM1040_0113 119466 - 121451 + | AMP-dependent synthetase and ligase TERM 116 122079 - 122061 - g 77 -3.8 -5.0133 | gap 1, opp_overlap 122062, overlap 122062 TACGGTTTGAAAAAA CGCGTCG AGCTTG CG-CGCG CCCTGGCGGCCGAGC TM1040_0114 121536 - 122354 + | ABC transporter related TERM 117 122570 - 122581 + G 71 -7.2 -4.17657 | GTCGGGATCATGCAG GGGC AGGT GCCC TTTTCCCATCTGATC TM1040_0115 122393 - 123379 + | inner-membrane translocator TM1040_0116 123841 - 123416 - | hypothetical protein TM1040_0117 123944 - 124204 + | hypothetical protein TERM 118 124354 - 124364 + G 70 -4.6 -4.4767 | CTCGCTCTGGCCTTT GGCG TGG TGCC TTTTGTAGTCAATGA TERM 119 124689 - 124701 + G 71 -6.9 -4.14472 | GGTCTGGCTCTTCAA CCGCG TGC CGTGG TTTTACAACTATTCC TM1040_0118 124243 - 125319 + | inner-membrane translocator TM1040_0119 125411 - 126694 + | branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid binding protein, putative TM1040_0120 126813 - 127649 + | ABC transporter related TERM 120 128676 - 128626 - g 82 -11.9 -3.95424 | gap 1, overlap 128630 128671 ACGACCAAGATCAAA GGCATGTTTGTCCGCCCAGAGCAG GTTG CGGCCCTGGTCG-ACAAACACGAC GAGATCGTGAAGGCG TM1040_0121 127666 - 128883 + | phenylacetate-CoA ligase, putative TERM 121 128908 - 128941 + F 95 -16.8 -3.61371 | gap 1, opp_overlap 128904 128908 ATATGATCCAAGTGA GCCGCCGTTGCCGAC ATGCC GTCG-CAGCGGCGGC TTTGCGCTGGAATTT TERM 122 128941 - 128908 - f 80 -15.3 -2.55722 | gap 1, opp_overlap 128908, overlap 128904 ATATGATCCAAGTGA GCCGCCGTTGCCGACA TGC CGTC-GCAGCGGCGGC TTTGCGCTGGAATTT TERM 123 129080 - 129052 - g 80 -10.1 -4.07568 | CTCCTCGCCGTAAAA CCTCTGCGCGCAT CAA AGGCGCGCGGCGG TTCCAGGTGGTGGCA TERM 124 130242 - 130278 + G 89 -10.9 -4.25283 | gap 1 GACAATGCGCTTGAT GCTTGG-ATGCAGGCC AATTTC GGCCTGCGTACCGGGC TTTTGGTGACGGGCT TERM 125 130596 - 130615 + G 72 -11.4 -3.29273 | overlap 130594 GCGGATGAGCGGCTC GAGGGCGC GGCG GTGCCCTC TCTTGTGATCATGGC TM1040_0122 129006 - 130685 + | binding-protein-dependent transport systems inner membrane component TM1040_0123 131552 - 130689 - | cobalamin synthesis protein, P47K TERM 126 131848 - 131865 + r 89 -11.3 -4.34263 | AATTTTGGCGATTCG CGACCGT TGCG ACGGTCG TTTGTGTTGTTGCGA TERM 127 131895 - 131916 + r 81 -12.9 -3.60627 | opp_overlap 131895 AGCGGAAACGAAAAA GGGCGCAGC AATT GCCGCGCCC TTTGACATAACGTGG TERM 128 131916 - 131895 - R 100 -15.1 -4.99134 | opp_overlap 131895 AGCGGAAACGAAAAA GGGCGCAGC AATT GCCGCGCCC TTTGACATAACGTGG TM1040_0124 132949 - 131939 - | extracellular solute-binding protein TERM 129 133277 - 133246 - R 100 -16.8 -4.83759 | opp_overlap 133253, overlap 133253 AACCAAACCCAAAAA CAAAAAACCGCATC CTGA GATGCGGTTTTTCG GAGCCTTCAAAGAGG TERM 130 133270 - 133253 - R 100 -11.3 -5.93252 | opp_overlap 133253, overlap 133246 CCCAAAAACAAAAAA CCGCATC CTGA GATGCGG TTTTTCGGAGCCTTC TERM 131 133253 - 133270 + r 95 -11.3 -4.58283 | opp_overlap 133253 133246 CCCAAAAACAAAAAA CCGCATC CTGA GATGCGG TTTTTCGGAGCCTTC rpmJ 133435 - 133310 - | 50S ribosomal protein L36 TERM 132 133414 - 133446 + g 74 -6.9 -4.36914 | GGTTCTTCAGCGAGC GGAGCGAGTTCTTGA CCT TCATGGTCTCTCTCC TTTTCTGCGGCGCGA TM1040_0126 133740 - 134600 + | N-formylglutamate amidohydrolase TM1040_0127 135908 - 134637 - | DNA polymerase IV TM1040_0128 136011 - 136430 + | NUDIX hydrolase TERM 133 136524 - 136502 - T 77 -7.6 -4.41348 | overlap 136503 TGTTTTTGAAAGAAA GCCCCCGC ACAATTG GCGGGGGA AGGTGACGTTTCTCA TERM 134 136523 - 136503 - T 74 -11.1 -3.24488 | overlap 136502 GTTTTTGAAAGAAAG CCCCCGC ACAATTG GCGGGGG AAGGTGACGTTTCTC TERM 135 136835 - 136822 - T 79 -2.3 -5.26316 | opp_overlap 136824 CGAGCGCACAAAAAA CAGGC GTGT GGCTG CGCGTGCCTCAGTTC TM1040_0129 137569 - 136844 - | orotidine 5'-phosphate decarboxylase TERM 136 137329 - 137339 + g 71 -8.2 -4.09685 | opp_overlap 137318 CGAACTGCGCCAATC CGCG CAC CGCG TTTTCCACGGTGGCC TERM 137 137569 - 137583 + H 73 -5.6 -4.56775 | overlap 137570 CGAGGGGGCTGGTCA TCGGGG ATA CTCCGG TTTTTAGGGCAAGCT TM1040_0130 137814 - 140432 + | ATPase AAA-2 TERM 138 140480 - 140455 - f 75 -5.9 -4.53034 | opp_overlap 140457, overlap 140456 140457 CCTATATAAGGAAAA TGGGGTCGCCC TCTG GGGCGGCCCTT TTTTAAACGAACGTC TERM 139 140478 - 140457 - f 73 -12.9 -2.57935 | opp_overlap 140457, overlap 140456 140455 TATATAAGGAAAATG GGGTCGCCC TCTG GGGCGGCCC TTTTTTAAACGAACG TERM 140 140457 - 140478 + F 100 -15.1 -5.00616 | opp_overlap 140456 140455 140457 TATATAAGGAAAATG GGGTCGCCC TCTG GGGCGGCCC TTTTTTAAACGAACG TERM 141 141615 - 141637 + G 71 -9 -3.79882 | opp_overlap 141602 141612 141613, overlap 141613 GACGGTGGAGAAGGC GGCACCGGCG CGG CACCGATGCC TTTGATCGATCTTGT TM1040_0131 140622 - 142115 + | ferredoxin-dependent glutamate synthase TM1040_0132 142489 - 142088 - | hypothetical protein TERM 142 142679 - 142725 + H 91 -13 -4.07568 | CGTGCGTGAATCTAA CCGGCGTGATGTTACAGTGCTG GCA CGGCATTGTGACGGCGCGTTGG TTTTCCACCGCGCCC TERM 143 143585 - 143573 - g 70 -10.5 -3.50572 | opp_overlap 143568 143578 AGTCAGGCCACAGAA CGCCG GAT CGGCG GCGGGCTGTTCTCGC TERM 144 143649 - 143639 - g 85 -6.8 -4.82154 | AATGGATATGAAAAA GAGG TGG CCTC GCTCTATGACGGTAT TM1040_0133 142784 - 143686 + | putative sulfite oxidase subunit YedY TM1040_0134 143686 - 144285 + | putative sulfite oxidase subunit YedZ TM1040_0135 144346 - 144612 + | hypothetical protein TERM 145 145527 - 145507 - T 70 -9.7 -3.53343 | overlap 145494 AAGTTGGGGGTGAAA TCCCAGGGC TCA ACCCTGGAA CTGCCTCCAAAACTA TERM 146 146554 - 146535 - T 78 -6.4 -4.77165 | opp_overlap 146539, overlap 146537 146542 CTCTTCAGAACAAAA CACAGACC TACC GGTCTGTC TGGGTCGGTAGCTCA TERM 147 146552 - 146537 - T 73 -9 -4.00512 | opp_overlap 146539, overlap 146535 146542 CTTCAGAACAAAACA CAGACC TACC GGTCTG TCTGGGTCGGTAGCT TERM 148 146889 - 146831 - T 75 -12.5 -2.92442 | overlap 146875 ATCCAATAGATCAGA GGGTTCGATTAGACCTTTGAGACACCC CGCGC GGGTGGTTCAAACGTCCAATCGGACAC TGCGGCAATCGCTTG TERM 149 147770 - 147753 - T 70 -11.3 -3.02043 | AATCCTGTCTGAAGA TCGGAGG ACCA CCTCCGA AGGCTAAGTACTCCT TERM 150 148602 - 148557 - T 74 -12.5 -2.88544 | opp_overlap 148557 148560, overlap 148560 148562 GCGTAGTGTGACATA GAACAGCTCCTCCTTAGACCC CTCG GGGTCATTGGAGGAACAGTTC TTTCGATGAAGCGGG TERM 151 148557 - 148602 + T 74 -10.3 -3.64703 | opp_overlap 148557 148560 148562, overlap 148560 GCGTAGTGTGACATA GAACAGCTCCTCCTTAGACCC CTCG GGGTCATTGGAGGAACAGTTC TTTCGATGAAGCGGG TERM 152 149079 - 149066 - T 74 -4.5 -4.7254 | ACTGTTTATTAAAAA CACAG GGCT CTGCG AAGTCGCAAGACGAC TERM 153 150357 - 150381 + T 71 -8.5 -3.89182 | opp_overlap 150308, overlap 150350 150358 CGCTTCCGGCCACCG TCTGAACTCGC TTC GCGAGTGCAGC TTTGGGTTCTTATTC TERM 154 150358 - 150380 + T 73 -12 -2.92425 | opp_overlap 150308, overlap 150357 150350 GCTTCCGGCCACCGT CTGAACTCGC TTC GCGAGTGCAG CTTTGGGTTCTTATT TM1040_0136 151112 - 150726 - | response regulator receiver protein TM1040_0137 152278 - 151103 - | histidine kinase TERM 155 152156 - 152122 - G 85 -7 -4.72846 | overlap 152114 152124 GGAGACACGCAAAAA CTGCGAGGGTCATGCT GGC AGCAAGACCTTCCCGG GCAAAGGCATATGCT TM1040_0138 152919 - 152275 - | hypothetical protein TM1040_0139 153326 - 152904 - | putative anti-sigma regulatory factor, serine/threonine protein kinase TERM 156 153044 - 153030 - G 71 -5.7 -4.3898 | overlap 153038 153041 ATTACCCGTAGAAAA GCCAT CAATC ATGGC GGACTCTATGTCCGC TM1040_0140 153679 - 153323 - | anti-sigma-factor antagonist TM1040_0141 154578 - 153682 - | anti-sigma-factor antagonist TM1040_0142 156234 - 154810 - | hypothetical protein TERM 157 154840 - 154851 + g 70 -3.6 -4.59773 | opp_overlap 154831 CCAAAAGCCCGATTT GCGC GCAT GTGC TTTTTGCAAGTCGCG TERM 158 155570 - 155590 + g 83 -16.1 -3.06315 | ATCTCGCTGGCACGG TCGCGCGCG TTG CGCGCGCGG TCTTCGCGCTGTTGC TERM 159 156263 - 156277 + r 95 -12.8 -4.58585 | opp_overlap 156263 CCAGATATGGAAAAA GCGCCC GTG GGGCGC TTTGTTGTTTGGATC TERM 160 156277 - 156263 - R 100 -12.8 -4.72846 | opp_overlap 156263 CCAGATATGGAAAAA GCGCCC GTG GGGCGC TTTGTTGTTTGGATC TM1040_0143 156646 - 156335 - | ETC complex I subunit region TERM 161 157130 - 157120 - g 78 -6.8 -4.63218 | opp_overlap 157121, overlap 157121 TTGCGCCCAACAAAA CGCT GGC AGCG CAGCTTTACGGTGAG TERM 162 157654 - 157639 - g 74 -6.8 -4.37886 | overlap 157641 GGAGCTTTGAGAAAA TCCGCG TCTA CGCGAA TTCGCACTATGTGAC TERM 163 157731 - 157712 - g 71 -9.2 -3.72324 | GATTTCGATCAAGAA CGAGCTGC GCCA GCGGCTCG ACAATCTGGTGAGCG TM1040_0144 156843 - 159035 + | excinuclease ABC subunit B TM1040_0145 160424 - 159057 - | deoxyguanosinetriphosphate triphosphohydrolase TERM 164 159323 - 159360 + g 73 -9.9 -3.67954 | gap 1 TGCGTCCCACCACTT CGAGCGCAGTTTTA-CGC TGG GCGGTGAAAATGCGCGCG TTTGAGATCTCTTTC TM1040_0146 161540 - 160500 - | FAD dependent oxidoreductase TM1040_0147 161599 - 162282 + | hypothetical protein TERM 165 162335 - 162352 + G 76 -5.6 -4.62069 | TGGGCATTCTACTGA TGATCG GCGCGA CGATCA TTTTTGCCCTGCAAG TM1040_0148 162286 - 163173 + | hypothetical protein TM1040_0149 165096 - 163129 - | lytic transglycosylase, catalytic TERM 166 163902 - 163888 - G 76 -5.6 -4.63527 | TGAGGACTGCAAAAA TGGGGC GTT GCGCCA GTTCGGGGCCTCTGG TERM 167 165934 - 165915 - g 84 -5.6 -4.91109 | opp_overlap 165931 GGGTGACTACAAAAA GGCTCTGG ACTA CCAGGACC GCCTGATGCCGCTGC TERM 168 165931 - 165960 + G 78 -10.7 -3.85817 | opp_overlap 165915, overlap 165934 GCTCTGGACTACCAG GACCGCCTGATGC CGCT GCATGAGGCGATC TTTATCGAGCCGGGT TM1040_0150 165208 - 166107 + | dihydrodipicolinate synthase TERM 169 166104 - 166120 + T 80 -5.1 -4.8622 | CCACGCAGGCCTGCT CTGACGA CAC TGGTCAG TTTTTGATTGCAGCA TERM 170 166134 - 166156 + T 100 -16.3 -5.08255 | AGTTTTTGATTGCAG CAGCCCCGG TTCTT CCGGGGCTG TTTTGTTTTGCGGAT TM1040_0151 167086 - 166208 - | ECF subfamily RNA polymerase sigma-24 factor TM1040_0152 167544 - 167083 - | alkylhydroperoxidase AhpD core TM1040_0153 168676 - 167639 - | hypothetical protein TM1040_0154 169603 - 168851 - | hypothetical protein TERM 171 169150 - 169130 - G 81 -5.4 -4.82901 | gap 1 TTGCGCGGATAAAAA GGCGG-CTG TCGG CAGGCCACC AACGCCTGCGGCATT TM1040_0155 171393 - 169615 - | sulfoacetaldehyde acetyltransferase TERM 172 171409 - 171452 + r 79 -10.8 -3.87869 | overlap 171413 GGTTGGCTCTCCCGA TTGCGGCGTGGCGAGACGCG CATT CGCGGCGCGCCATGCCTTGG TTTATGCAGGCTTGC TERM 173 171413 - 171448 + r 100 -18.2 -3.6053 | overlap 171409 GGCTCTCCCGATTGC GGCGTGGCGAGACGCG CATT CGCGGCGCGCCATGCC TTGGTTTATGCAGGC TM1040_0156 173017 - 171551 - | GntR family transcriptional regulator TM1040_0157 173159 - 173482 + | ArsR family transcriptional regulator TERM 174 173987 - 174000 + G 70 -4.5 -4.57073 | gap 1, overlap 173974 173999 TGTCGTCAAGGCATT GCGCCG TGG CGG-GC TTTTTGCGGAGCCTC TERM 175 174057 - 174037 - g 76 -9 -4.07885 | gap 1, overlap 174021 GAGCTCCTGTCAAAA GCTGCTGCG GATG CGCAGC-GC CTGCCACCGATGCAC TM1040_0158 173475 - 174506 + | permease TERM 176 174717 - 174661 - T 78 -13.7 -3.17622 | gap 2, opp_overlap 174672, overlap 174662 CATTCTGATAAGAGA GGCGGGTCAAGGA--CTGGCGGCCCCG AGGGG CGGGGCCTGCGGCCTCCTTGACCCGCA AGAGGCCTCCCGCAT TERM 177 174716 - 174662 - T 86 -17.2 -2.50252 | gap 2, opp_overlap 174672, overlap 174661 ATTCTGATAAGAGAG GCGGGTCAAGGA--CTGGCGGCCCCG AGGGG CGGGGCCTGCGGCCTCCTTGACCCGC AAGAGGCCTCCCGCA TERM 178 174806 - 174768 - T 80 -14.8 -2.63596 | gap 1, opp_overlap 174776, overlap 174776 CCGCATGTCAGACGA TGTAAAAAGGCGGCCCC GAGGTG GGAGCCGCCTTTTT-CA ATGGGCGTGGGACCT TERM 179 174799 - 174776 - T 100 -13.1 -4.69664 | opp_overlap 174776, overlap 174768 CAGACGATGTAAAAA GGCGGCCCC GAGGTG GGAGCCGCC TTTTTCAATGGGCGT TERM 180 174776 - 174799 + T 95 -12.4 -4.66163 | gap 1, opp_overlap 174776 174768 CAGACGATGTAAAAA GGCGGC-CCCG AGG TGGGAGCCGCC TTTTTCAATGGGCGT TM1040_0159 176232 - 174832 - | aminotransferase TERM 181 176371 - 176409 + H 80 -11.3 -3.74251 | gap 1, opp_overlap 176370 176371 TCCAAAAGTAGAAAG CACATATGTTCTCAAATG TCGG CATT-GGGGACATATGTG TTTGATGGCAATCTG TERM 182 177230 - 177245 + G 78 -6.8 -4.59773 | overlap 177231 CTGGGCCGACAACGC TGCCTC TGTT GAGGCG TTTTTGAACCTGACC TM1040_0160 176517 - 177329 + | hypothetical protein TERM 183 178051 - 178079 + G 91 -8.1 -4.8622 | GATCCTCGACGAGGT GATGTGCGGCATG GGG CGTACCGGACATC TTTTTGCTTGCGACG TERM 184 178387 - 178398 + G 74 -7.2 -4.43208 | overlap 178394 CAATGTGGGTGATAT CCGC GGGC GCGG TTTGTTTCGCGGTCT TM1040_0161 177326 - 178654 + | hypothetical protein TERM 185 179125 - 179107 - g 74 -11.7 -3.52906 | opp_overlap 179116, overlap 179105 CCACGTCTACAAATA CGAGGCG GGCGG CGCCTCG GCACTGGGCGGCGTT TERM 186 179668 - 179680 + G 79 -7.7 -4.56597 | opp_overlap 179668 179676 179677 CATGGTCGCGCACAA CACCA ATA TGGTG TTTTTCACACCCGAA TM1040_0162 178748 - 179851 + | L-threonine aldolase TERM 187 179904 - 179861 - T 77 -13.9 -2.92653 | gap 3 GGATAAGCCTAGAGA GCTGA-G-GGCGCC-GGGGTGG TTC CCGCCCCCGGCGCCGCGCCAGC GGCGCGGCGGGACTG TM1040_0163 180706 - 179945 - | putative carboxyphosphonoenolpyruvate phosphonomutase protein TERM 188 180805 - 180831 + r 90 -15.2 -3.63627 | opp_overlap 180800 180798, overlap 180806 ACAGAAAATCGCGCC GCCTGAGATCGG GCG CCGATCTCAGGA TTTCAAATCTGCGCG TERM 189 180806 - 180830 + r 93 -18.7 -2.77962 | opp_overlap 180800 180798, overlap 180805 CAGAAAATCGCGCCG CCTGAGATCGG GCG CCGATCTCAGG ATTTCAAATCTGCGC TM1040_0164 181501 - 180902 - | recombination protein RecR TERM 190 181622 - 181605 - R 100 -10.5 -5.14563 | opp_overlap 181605 181613 GCGGTCATGAAAAAA GGCGACC CTCG GGCCGCC TGAATTTCGCATGTC TM1040_0165 181989 - 181645 - | hypothetical protein TM1040_0166 183914 - 182088 - | DNA polymerase III subunits gamma and tau TERM 191 183214 - 183200 - G 80 -10 -4.07568 | TTGCCTGGTCCAAAA GGGATG TCG CATCCC GGGCCGATCCTTCTG TM1040_0167 184138 - 184677 + | protein tyrosine phosphatase / dual specificity protein phosphatase TM1040_0168 185185 - 184688 - | hypothetical protein TERM 192 185004 - 185017 + g 71 -8.1 -4.07568 | TTCGTAAGCCCGCGG GCGCT GTCG AGCGC TTTTGCCAGCGCCGC TERM 193 185650 - 185620 - R 100 -17.6 -3.73953 | opp_overlap 185627, overlap 185627 AGCAGGCTCATCAAA CACAAAACCCCGCC TGG GGCGGGGTCGTGTG ACAAGTGAGAGGCTG TERM 194 185627 - 185643 + r 80 -15.1 -2.62616 | opp_overlap 185620 185627 TCATCAAACACAAAA CCCCGCC TGG GGCGGGG TCGTGTGACAAGTGA TERM 195 185643 - 185627 - R 100 -15.1 -4.82128 | opp_overlap 185627, overlap 185620 TCATCAAACACAAAA CCCCGCC TGG GGCGGGG TCGTGTGACAAGTGA TM1040_0169 187720 - 185822 - | 5'-nucleotidase-like TERM 196 188196 - 188212 + G 85 -6.5 -4.82901 | overlap 188188 TCCGCTTGTCTCTGG GCGCC GTGCGGA GGCGC TTTTTCTGGGCCGGA TERM 197 188901 - 188924 + G 80 -3.1 -5.07652 | TCCCAAGGTGCGTGC CCCGCGA AAAGGTGCGA TTGCGGG TTTTCTTTTGGAAAA TM1040_0170 187981 - 188964 + | NUDIX hydrolase TERM 198 189265 - 189284 + G 74 -5.7 -4.56597 | AGAGGTCGCCGAATG CGACCGT CCCAAC ACGGTTG TTTTTGCGGCCACCG TM1040_0171 189050 - 189517 + | hypothetical protein TERM 199 189749 - 189776 + G 74 -6.3 -4.48221 | gap 1, overlap 189740 GCGTTTGTCGCGGTT GCGGCTCTGATC TGCGT GATCGG-GTCGC TTTTGTCGGTTCATA TM1040_0172 189692 - 191749 + | diguanylate cyclase/phosphodiesterase TM1040_0173 191860 - 192174 + | IS5 family transposase TM1040_0174 192195 - 192584 + | IS4 family transposase TM1040_0175 195974 - 192594 - | DNA polymerase III, alpha subunit TM1040_0176 197275 - 195974 - | hypothetical protein TM1040_0177 197981 - 197394 - | hypothetical protein TM1040_0178 198667 - 198056 - | TetR family transcriptional regulator TERM 200 198129 - 198104 - G 79 -9.6 -4.15044 | CGCGGTTTCAATAAA GCGCCGCACC TCATCC GGCTCGGCGC CTGCCCGTACCCGCA TERM 201 198186 - 198163 - G 74 -10.9 -3.4285 | opp_overlap 198158 198164 CCAGCGAATGCAGAA CCGCCGCTG CCATCT CTGCGGCGG CCTGTCTTGCGGTCT TM1040_0179 199296 - 198664 - | metal dependent phosphohydrolase TERM 202 198926 - 198940 + g 85 -3.4 -5.41143 | overlap 198928 CCGATCTGCACCAAG GCTGCC TCG GGCGAC TTTTTTTGCGGGATC TERM 203 199409 - 199392 - R 100 -14.1 -5.35224 | GTGACAAAAAGAAAA GGCGCCC CGAA GGGCGCC TTAAGACCATGATAT TM1040_0180 200230 - 199436 - | enoyl-[acyl-carrier-protein] reductase [NADH] TM1040_0181 201465 - 200236 - | 3-oxoacyl-[acyl-carrier-protein] synthase I TM1040_0182 202057 - 201548 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 204 202187 - 202206 + H 81 -4.2 -5.03314 | gap 1 GAGTAAGGTCCGGCC CGT-GCCGC GCA GCGGAGACG TTTTTTGCAAATCCG TM1040_0183 202285 - 202713 + | ferric uptake regulator family protein TERM 205 202784 - 202772 - T 88 -4.7 -5.45726 | CAGACCTGAAAAAAA GGGGC TCT GCCTC CTCGGTGCTTTTGAA TM1040_0184 203727 - 202858 - | hypothetical protein TERM 206 204330 - 204344 + G 73 -4.9 -4.70659 | CGCCCCAAGGCCAAG CGTGG ACCCA CCGCG TTTTTGACTGTGCAG TM1040_0185 203892 - 205214 + | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 207 205272 - 205241 - f 76 -7.1 -4.60889 | opp_overlap 205244, overlap 205231 205228 205242 205243 AAGTATCCCCAAAAA TGGGGGCGCTGCC GAAGTT GGCAGCGCCCTTT CTTTTTGCCTGTGTC TERM 208 205271 - 205242 - f 70 -10.6 -3.3581 | opp_overlap 205244, overlap 205231 205228 205241 205243 AGTATCCCCAAAAAT GGGGGCGCTGCC GAAGTT GGCAGCGCCCTT TCTTTTTGCCTGTGT TERM 209 205270 - 205243 - f 78 -14.1 -2.61004 | opp_overlap 205244, overlap 205231 205228 205242 205241 GTATCCCCAAAAATG GGGGCGCTGCC GAAGTT GGCAGCGCCCT TTCTTTTTGCCTGTG TERM 210 205244 - 205269 + F 100 -18.3 -4.89966 | opp_overlap 205231 205228 205243 205242 205241 TATCCCCAAAAATGG GGGCGCTGCCG AAGT TGGCAGCGCCC TTTCTTTTTGCCTGT TM1040_0186 205559 - 206137 + | OmpA/MotB TM1040_0187 206149 - 206454 + | putative lipoprotein TERM 211 206502 - 206528 + F 76 -7.1 -4.55295 | opp_overlap 206503, overlap 206503 GGACATGACCATAGA AGGGCGGCTCC TCAGT GGCGCTGCCCA TTTCTTTGTGGGGCA TERM 212 206503 - 206527 + F 70 -10.6 -3.32695 | opp_overlap 206503, overlap 206502 GACATGACCATAGAA GGGCGGCTCC TCAGT GGCGCTGCCC ATTTCTTTGTGGGGC TM1040_0188 206670 - 207686 + | PhoH-like protein TM1040_0189 208269 - 207790 - | GCN5-related N-acetyltransferase TERM 213 208552 - 208610 + G 72 -13.8 -2.53125 | gap 1, overlap 208553 208554 CGAATGTGCTGAGCT GGCCTGCGCAGGAGTTGGCTG-CCGCC CAAGAC GGTGGTCAGCCCACTCCCCCGGAGGTC GATTTTATGGGGGAT TM1040_0190 208272 - 208856 + | hypothetical protein TM1040_0191 208879 - 209781 + | CBS domain-containing protein TERM 214 211219 - 211241 + G 71 -6.8 -4.22678 | overlap 211205 GTGGCACCGGGGATT GGCCGGCGGC ATT GGTGGCGGCC TTTCTCTTGGGTGTC TM1040_0192 209778 - 211304 + | apolipoprotein N-acyltransferase TM1040_0193 211416 - 212597 + | S-adenosylmethionine synthetase TERM 215 212633 - 212652 + F 100 -12.8 -4.89567 | opp_overlap 212630 CGACCAAAGGCATCA GGGCGGGG GCAA CCTCGCCC TTTTCTGTTTTGGGC TERM 216 212883 - 212899 + G 72 -2.9 -4.7254 | overlap 212881 TAAGCGCCTCTATGT CGACGGT GCG ACCCTTG TTTTTGATACAGAAT TERM 217 213237 - 213252 + G 71 -5.4 -4.35044 | gap 1, opp_overlap 213237, overlap 213237 TCTGCGCGAAAATCA GGG-GTG GGA CACGCCC TTTGTGTTTGGGTCC TM1040_0194 212764 - 213438 + | hypothetical protein TERM 218 213975 - 213962 - g 71 -8.1 -4.13767 | opp_overlap 213973 GTCGTCAGCGGAAAA CGTGC GCGT GCACG CAGGCGATGCCCGCG TERM 219 214306 - 214283 - g 87 -10.3 -4.33274 | gap 1, opp_overlap 214288 CCGATATGAGCAAAA GGCGCTGCGC GAGGG GCGCA-CGCC GCATTACCTGACGTT trmB 213570 - 214337 + | tRNA (guanine-N(7))-methyltransferase TERM 220 214368 - 214393 + T 74 -7.4 -4.21768 | opp_overlap 214365 214368, overlap 214369 TTGTCCGATAGAGCA TCCCCCCGCC ACAGAG GGCAGGGGGC TTTTCGCATTGATTA TM1040_0196 215035 - 214406 - | nitroreductase TERM 221 215103 - 215116 + r 74 -6.7 -4.41348 | GTTCAAGTTGATTTA TCTCG ACGT CGAGA TTTATTTAGACGCCA TM1040_0197 215839 - 215228 - | cytidylate kinase TM1040_0198 216381 - 215899 - | GCN5-related N-acetyltransferase TERM 222 216196 - 216184 - G 71 -6.2 -4.37886 | overlap 216186 TGACCCGTCATAAAA GGCG GCAGT CGCC GTGGGGTCATAGCGA TM1040_0199 217726 - 216374 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 223 217331 - 217342 + g 71 -7.2 -4.15044 | opp_overlap 217309, overlap 217330 CGGATCGGTCACACG CGCC ATCG GGCG TTTGTTGAGCGAGGC TERM 224 217563 - 217587 + g 100 -10.7 -4.96848 | opp_overlap 217563 GCGGTGTCGAGCACA TCTTCGCCCTC AAG GAGGCCGGAGA TTTTTGTCTCACCCA TERM 225 218182 - 218203 + H 95 -11.5 -4.52349 | overlap 218175 AGGACGGACGGAGCA GGGTCGGGG CATA CCTCGGCCC TTTGTGTTTGTTTGT TERM 226 218580 - 218570 - g 71 -8.2 -4.07568 | GCGCGCCGCTGAAAA CGCC CGT GGCG AAGCTGTTATCTCCC TERM 227 219327 - 219284 - g 83 -5.2 -5.1356 | gap 1 CTGGACCAAGAAAAA CGTGCAC-CCCGGCAAGATCG TTT CCACCTCGCAGGAAGTGGACG TCATGGTTCTGGAAA rpsA 218325 - 220001 + | 30S ribosomal protein S1 TERM 228 220057 - 220020 - T 77 -9.8 -3.90922 | opp_overlap 220026, overlap 220002 220026 ACTCCTCTGAAAGAA TGGAAAGCCCCGCAGG TTCATT CCTGCGGGGCTTTTTT GTGAGGTAAGCCCGG TERM 229 220051 - 220026 - T 100 -17.6 -3.89435 | opp_overlap 220026, overlap 220020 CTGAAAGAATGGAAA GCCCCGCAGG TTCATT CCTGCGGGGC TTTTTTGTGAGGTAA TERM 230 220026 - 220051 + T 100 -17.6 -5.26316 | opp_overlap 220026 220020 CTGAAAGAATGGAAA GCCCCGCAGG TTCATT CCTGCGGGGC TTTTTTGTGAGGTAA TM1040_0201 220743 - 220102 - | hypothetical protein TERM 231 220277 - 220292 + g 74 -6.8 -4.41348 | gap 1, overlap 220276 TGGATGAAGGCTGGG GCGAGCG CGT CGC-CGC TTTCTTTGGCAAAGA TERM 232 220836 - 220873 + H 71 -7.6 -4.14511 | ATTGCGCAGCGCGTG CGCTGCGCTGCCCTTC GAAGCA GAAGGGCGCCGAATCG TTTTGGAATGCGCTT TERM 233 221012 - 221028 + H 70 -3 -4.76075 | TCCCCCCTTTCTAAC CTGTTT GCGCA GAACAG TTTTCTTCCTATAGT TERM 234 221292 - 221266 - g 75 -7.8 -4.15044 | TTTTCGGTGAAGAAA CGTGATGCGCGC GTC GGGCGCAACCCG CGCACCGGCGAGACG ihfB 221101 - 221388 + | integration host factor subunit beta TERM 235 221724 - 221692 - g 70 -3.3 -4.62471 | opp_overlap 221698 221703, overlap 221698 221703 CTCAAGCGTCAAAAA CACGAAGGCAAGGAC GAG GTTCTCGCCCTTCTG GACGACGCCTCCTGA TM1040_0203 221389 - 221739 + | hypothetical protein TM1040_0204 221741 - 222388 + | N-(5'-phosphoribosyl)anthranilate isomerase TM1040_0205 222662 - 223507 + | LysR family transcriptional regulator TM1040_0206 223721 - 224980 + | tryptophan synthase subunit beta TERM 236 225013 - 225034 + T 100 -11.5 -5.35224 | AAGATCCAAGTGGAA GGCGCGTCC TGAG GGGTGCGCC TTTTCTTTTTCTGGC TM1040_0207 225483 - 225112 - | HxlR family transcriptional regulator TERM 237 226198 - 226152 - g 72 -2.8 -4.7373 | overlap 226154 TGACGTCATGAAAAA TCCCGAGATTGACGCCGACCTG ATC CGGTTCGACGCACATCTCGACA GCCTATTTGCGGAGG TM1040_0208 225625 - 226233 + | NAD(P)H dehydrogenase (quinone) TERM 238 226352 - 226340 - g 84 -5.5 -5.0133 | GACTTTTCCAAAAAA GAGCA GCA TGCCC CCGATTATGTGAAGA TM1040_0209 226220 - 226921 + | glutathione S-transferase-like TM1040_0210 226926 - 227567 + | DSBA oxidoreductase TM1040_0211 227730 - 228554 + | Beta-lactamase TERM 239 228605 - 228566 - T 79 -9.1 -4.21827 | TTAAACAGGGTAAAA GGGGTGCCGCCGCGCTG GTGAAA CAGTGCGGCGGCAGGTC GGCTCACGCATAGGC TM1040_0212 229106 - 228609 - | glyoxalase/bleomycin resistance protein/dioxygenase TM1040_0213 229195 - 230097 + | LysR family transcriptional regulator TM1040_0214 230928 - 230182 - | peptidyl-tRNA hydrolase TERM 240 230716 - 230699 - G 85 -5.5 -5.03314 | gap 1, overlap 230701 GTGAGTTTGAAAAAA CG-CAGCG CCT CGCCGACG GATTGGCCGGAGTTG TERM 241 230854 - 230887 + g 77 -11.1 -3.63744 | gap 1, opp_overlap 230864, overlap 230852 AGCGATCTGATCCAG CGCCATGAAACCGATA TTG TGTCGGTTTCC-GGCG TATTTTGCGCCCGGA TERM 242 230952 - 230967 + H 76 -3.9 -5.00616 | TCCCGCTGTCGTTTC GGGCG CAGTGA TGCCC TTTTTTGAGAGGAAA TERM 243 231082 - 231067 - H 77 -10.4 -3.7108 | ATTGCGACATTCAAA GAGGCG GTGC CGCCTC CAATAGACTTTGAGA TERM 244 231280 - 231294 + G 71 -5.6 -4.36914 | ACCGTCTTTGAAGCG CGCCAG TCG CTTGCG TTTTGTGCGCCGCAA TM1040_0215 231109 - 231594 + | hypothetical protein TERM 245 231672 - 231653 - T 100 -12.8 -5.55769 | opp_overlap 231653 TCCGACAACAAAAAA CGGGCCCC GCAA GGGACCCG TTCTCAGCATTCAGT TERM 246 231653 - 231672 + T 70 -10.6 -3.3344 | opp_overlap 231653 TCCGACAACAAAAAA CGGGCCCC GCAA GGGACCCG TTCTCAGCATTCAGT TM1040_0216 232337 - 231708 - | 50S ribosomal protein L25/general stress protein Ctc TM1040_0217 233146 - 232430 - | hypothetical protein TERM 247 232981 - 232991 + g 75 -8.2 -4.18494 | CGATGTCGGCATGGG GGCG CAA CGCC TTTTCAATGGCGGTG TM1040_0218 233213 - 234322 + | major facilitator transporter TM1040_0219 235532 - 234369 - | L-lactate dehydrogenase (cytochrome) TERM 248 234494 - 234504 + g 74 -6.8 -4.4009 | TCACCTCAAGGGCAC GGGT CAC ACCC TTTTGTCCCATGGCG TERM 249 235005 - 235020 + g 70 -3.2 -4.6856 | TGGGGTGAGCTTGGG CGGC GCAGAAAG GCCG TTTTTCAGGTCTTTG TERM 250 235760 - 235783 + G 88 -7.4 -4.98436 | gap 1, overlap 235760 TTGGAGTTTTCGTCG CCCC-GATTGC AGA GCAACCCGGGG TTTTTGTGATATTGG TM1040_0220 235564 - 235827 + | hypothetical protein TERM 251 237151 - 237131 - g 70 -3.1 -4.59511 | AAGAGGCGGTAAAAA CCTGGCGTC AAG AACGGCCGG ATCTGGTGCTGATGG TERM 252 237362 - 237351 - g 85 -5.8 -5.07486 | GATCCGCAAGAAAAA GCTG TTGT CAGC CATGGCGCGCGCGTT TM1040_0221 236023 - 237453 + | histidine kinase TERM 253 237515 - 237488 - T 89 -6.3 -5.33405 | gap 1, opp_overlap 237488 CTCAGCAAATAAAAA CCAGCA-GGGAG GATCG CTCCGATGCTGG TTCCATGTGCGCCCC trpA 238357 - 237554 - | tryptophan synthase subunit alpha TM1040_0223 238968 - 238456 - | hypothetical protein TERM 254 238764 - 238741 - G 84 -6 -5.00616 | gap 1 CCCGCCCCCAAAAAA CACATCACCCG TCT CGTG-GATGTG GCCTGCGACGCCCAG TERM 255 239245 - 239228 - g 75 -8.4 -4.25283 | opp_overlap 239243 ACGCGCTGACCAAAA CCGCCT CGGCGC AGGCGG CAAATTTTCCGTTCT TM1040_0224 239155 - 240252 + | translation-associated GTPase TERM 256 240304 - 240279 - f 82 -13.3 -3.38291 | opp_overlap 240279 GTCACAAGTTCAGAA TGCCCGTCTTC GAAG GAAGGCGGGCA TTTTTGCGAAACAGT TERM 257 240279 - 240304 + F 100 -15.5 -4.56775 | opp_overlap 240279 GTCACAAGTTCAGAA TGCCCGTCTTC GAAG GAAGGCGGGCA TTTTTGCGAAACAGT TERM 258 240453 - 240418 - g 91 -7.6 -4.85396 | gap 1, opp_overlap 240439, overlap 240420 ACAATGACAACAAAA CTCATCATCGACA-CGG ACC CCGGCATCGACGATGCG ATGGCTATTTTCTAC TERM 259 240633 - 240663 + G 70 -10.5 -3.55622 | gap 1 CCTGCCCCCCTTTGA GCCTTCGGC-CCAT GTGC ATGGCGACGAAGGC TTTGGCGACATTCCC TM1040_0225 240406 - 241329 + | inosine/uridine-preferring nucleoside hydrolase secE 241515 - 241712 + | preprotein translocase subunit SecE TERM 260 241800 - 241825 + F 86 -6.7 -5.06414 | overlap 241801 241802 CAGCCGATACTGGAT GAGGCGTGCGG CGAT TCGCACGCCGA TTTTTGTTGCACCGC TERM 261 241801 - 241824 + F 74 -10.2 -3.63367 | overlap 241800 241802 AGCCGATACTGGATG AGGCGTGCGG CGAT TCGCACGCCG ATTTTTGTTGCACCG TERM 262 241802 - 241823 + F 76 -13.7 -2.77538 | overlap 241801 241800 GCCGATACTGGATGA GGCGTGCGG CGAT TCGCACGCC GATTTTTGTTGCACC TM1040_0227 241908 - 242441 + | transcription antitermination protein nusG TERM 263 242493 - 242514 + F 100 -13 -5.33405 | TTGGGAACTTGAGGA TCGGCCCC TAAAAT GGGGCCGA TTTTTGTTTGGTCCG TERM 264 243111 - 243142 + G 70 -12.2 -2.90982 | GGCGGGTTGCCCGGA GGCCCGCATGCAGG ACGT CTGGGATGCGGGCC TGTCTCCAGATTTCT TM1040_0228 242545 - 243768 + | glycosyl transferase, group 1 TERM 265 243801 - 243827 + F 75 -9.5 -3.78934 | gap 1, overlap 243803 CGTATGAGCCGCCAA TC-TGCCCGGTT TCTC AACCGGGCGTGA TTCTTGTGGGAGGCC TERM 266 243803 - 243824 + F 73 -12.3 -2.98545 | overlap 243801 TATGAGCCGCCAATC TGCCCGGTT TCTC AACCGGGCG TGATTCTTGTGGGAG TERM 267 243907 - 243886 - f 71 -8.7 -3.74381 | opp_overlap 243886, overlap 243884 ACGCAACGCAAAAGA GCGTTTGGG CGCG CCCAAAGGC TGTTGAAAAGGAGAC rplK 243929 - 244354 + | 50S ribosomal protein L11 rplA 244356 - 245054 + | 50S ribosomal protein L1 TERM 268 245085 - 245104 + F 100 -11.4 -5.60993 | opp_overlap 245085 ATCTGAGAAAAGAAA GGCGGCAC TCCG GTGTCGCC TTTTTTTGTGCACGA TERM 269 245104 - 245085 - f 86 -9.2 -4.77775 | opp_overlap 245085 ATCTGAGAAAAGAAA GGCGGCAC TCCG GTGTCGCC TTTTTTTGTGCACGA TERM 270 245684 - 245696 + G 70 -4.8 -4.56597 | overlap 245653 245690 CGCGCGGTGTATGGC GAGG ATGCG CCTC TTTTTGGCCCCCGAA TERM 271 245690 - 245720 + G 76 -12.6 -3.31799 | overlap 245653 245684 GTGTATGGCGAGGAT GCGCCTCTTTTTGG CCC CCGAAGAGAGGGGC TTGTGGGCCATTCTC TM1040_0231 245198 - 246118 + | hypothetical protein TERM 272 246208 - 246243 + F 100 -14.8 -4.2558 | opp_overlap 246200 246216, overlap 246216 CTATGAAGCCCCCAC GGAGCAAAGCGTGCGA TTCG TCGTGCGCTTTTCTCC TTTTCGTCCAAGATG TERM 273 246216 - 246235 + F 83 -7.8 -4.68539 | opp_overlap 246216, overlap 246208 CCCCCACGGAGCAAA GCGTGCGA TTCG TCGTGCGC TTTTCTCCTTTTCGT TERM 274 246485 - 246465 - g 71 -5.3 -4.40003 | opp_overlap 246464, overlap 246466 246477 GCCCAGAAAGAGAAA GTGGTCGAG GAA CTCGGCCAG ATCTTCGAAAGCTCT rplJ 246441 - 246959 + | 50S ribosomal protein L10 rplL 247040 - 247417 + | 50S ribosomal protein L7/L12 TERM 275 247520 - 247485 - f 73 -11.8 -2.91322 | opp_overlap 247483, overlap 247482 ATAGGCCTCAAATCA TTTGGCTGGATCCGGG GATG CCCGGGTCCAGCTGAA CCTGTCTCAGAAAGG TERM 276 249624 - 249606 - g 71 -8.8 -3.76224 | CCGCCACCGAGGAAA TGCGTCAC ACC GTGGCGCA GGCGAACGCCAACCT TERM 277 250890 - 250876 - g 74 -5.6 -4.56607 | opp_overlap 250883, overlap 250868 GTACGAAGCACAAAA GCGTGC TCT GGACGC CCGTTTCGAGGACAA rpoB 247712 - 251851 + | DNA-directed RNA polymerase subunit beta TERM 278 252215 - 252199 - g 73 -4.3 -4.58395 | overlap 252200 GTTACCCTTCAAAAA GTGCGCC GCG AGCGCAT GGGCCACATCGAACT TERM 279 253361 - 253310 - g 73 -14.2 -2.79183 | opp_overlap 253308 TCGACGGTGACCAGA TGGCCGTGCACGTCCCGCTGAGCC TTGA GGCCCAGCTGGAAGCGCGCGTCCT GATGATGTCGACGAA TERM 280 255791 - 255756 - g 70 -10.4 -3.55444 | gap 1, overlap 255757 255762 GTTCGACGCTGCAAA CGAGAAGG-CGCTGGCC CGT GGCAAGCGTCCTGCTCA GGGCGAGCCGATCCT TM1040_0235 251905 - 256137 + | DNA-directed RNA polymerase subunit beta' TERM 281 256200 - 256159 - f 85 -14.4 -3.53012 | opp_overlap 256165 256199, overlap 256163 256165 CCGGCCGTTTTGAAA TGAAGAGCGCCCCGCGTC CACCGT GACGCGGGGCGCTTTTGT TTCGCGCGCGGGGCC TERM 282 256196 - 256163 - f 100 -19.6 -3.51232 | opp_overlap 256165, overlap 256159 256165 CCGTTTTGAAATGAA GAGCGCCCCGCGTC CACCGT GACGCGGGGCGCTT TTGTTTCGCGCGCGG TERM 283 256194 - 256165 - f 100 -22.2 -3.33151 | opp_overlap 256165, overlap 256163 256159 GTTTTGAAATGAAGA GCGCCCCGCGTC CACCGT GACGCGGGGCGC TTTTGTTTCGCGCGC TERM 284 256165 - 256194 + F 100 -22.2 -4.86731 | opp_overlap 256165 256163 256159 GTTTTGAAATGAAGA GCGCCCCGCGTC CACCGT GACGCGGGGCGC TTTTGTTTCGCGCGC TERM 285 256380 - 256400 + G 76 -6.7 -4.56597 | overlap 256385 ACCGCTATCCCGATC TGGAGGCGG CGG CCGCCGCGA TTTTTGCGCCGGACC TM1040_0236 256298 - 257110 + | hypothetical protein TM1040_0237 257154 - 257993 + | hypothetical protein TM1040_0238 258856 - 257972 - | hypothetical protein TERM 286 258989 - 259023 + H 78 -5.7 -4.81249 | gap 1, opp_overlap 258985 258989, overlap 259017 CCCTCTGTAAACCCA CCGC-GACGTTCACCT CGGA ATGGGAACGTTTGCGG TTTTTGCGTTTGCGC TERM 287 259189 - 259164 - g 79 -7.6 -4.55798 | overlap 259165 CAGCCGAAAGTAAAA CGCTCCAAGT CCATGC ACCTGGAGCA GTGCCCGCAAAAGCG rpsL 259113 - 259484 + | 30S ribosomal protein S12 TM1040_0240 259503 - 259973 + | 30S ribosomal protein S7 TM1040_0241 259995 - 262115 + | elongation factor G TERM 288 263308 - 263330 + G 70 -10.4 -3.48924 | opp_overlap 263281 CGCGATCCGCGAAGG CGGCCGCACC GTT GGCGCGGGCG TTGTGTCCAAGATCC TM1040_0242 262178 - 263353 + | elongation factor Tu TERM 289 263423 - 263391 - f 70 -10.5 -3.36175 | opp_overlap 263397, overlap 263393 263395 263397 AATGGCGAGTGACAA TAGAGAGGGCCTCCC AAT GGGAGGCCCTTTTTT GTTGCGAGGCGCTGC TERM 290 263421 - 263393 - f 78 -13.1 -3.24924 | opp_overlap 263397, overlap 263391 263395 263397 TGGCGAGTGACAATA GAGAGGGCCTCCC AAT GGGAGGCCCTTTT TTGTTGCGAGGCGCT TERM 291 263419 - 263395 - f 85 -15.7 -3.18945 | opp_overlap 263397, overlap 263393 263391 263397 GCGAGTGACAATAGA GAGGGCCTCCC AAT GGGAGGCCCTT TTTTGTTGCGAGGCG TERM 292 263417 - 263397 - f 90 -18.3 -3.15459 | opp_overlap 263397, overlap 263395 263393 263391 GAGTGACAATAGAGA GGGCCTCCC AAT GGGAGGCCC TTTTTTGTTGCGAGG TERM 293 263397 - 263417 + F 100 -18.3 -5.4505 | opp_overlap 263397 263395 263393 263391 GAGTGACAATAGAGA GGGCCTCCC AAT GGGAGGCCC TTTTTTGTTGCGAGG TM1040_0243 263547 - 264038 + | hypothetical protein TM1040_0244 264476 - 264727 + | hypothetical protein TERM 294 264854 - 264871 + F 86 -10.5 -4.28774 | opp_overlap 264854, overlap 264835 264866 GCATTGCGAGACGAA GGCGGGG TGAT TCCCGCC TTTTGGGTTCGATGA rpsJ 264947 - 265261 + | 30S ribosomal protein S10 TERM 295 265321 - 265307 - g 85 -3.4 -5.44721 | opp_overlap 265307, overlap 265309 ATTATCGCAAAAAAA GTGGGC ATG ACCCGC TTGTTCATGGAAGAC rplC 265280 - 265999 + | 50S ribosomal protein L3 TERM 296 266223 - 266197 - g 78 -6.5 -4.60041 | gap 1, overlap 266198 266199 266201 ATCTACCGCCAAAAA GGCACCGGTGGC GCAC GCCAC-GGCGAC CGTAACGCGCCGATC rplD 265996 - 266613 + | 50S ribosomal protein L4 TERM 297 266876 - 266853 - g 78 -2.3 -5.10077 | AAAGACGTGAAAAAA GCCTACGTC ACCCTG GAAGAAGGC AACACCATCGACGTG rplW 266610 - 266906 + | 50S ribosomal protein L23 TERM 298 266926 - 266963 + F 100 -19.3 -3.4782 | opp_overlap 266932 266933, overlap 266933 TGGTTGCTTGAGAAT TGAGAAGGCCCCTCGCA GCGA TGCGGGGGGCTTTTTCA TTGCGTTTTTGCTGT TERM 299 266957 - 266932 - f 72 -10.3 -3.45054 | opp_overlap 266926 266933, overlap 266933 CTTGAGAATTGAGAA GGCCCCTCGCA GCGA TGCGGGGGGCT TTTTCATTGCGTTTT TERM 300 266933 - 266956 + F 100 -16 -4.90917 | opp_overlap 266932 266933, overlap 266926 TTGAGAATTGAGAAG GCCCCTCGCA GCGA TGCGGGGGGC TTTTTCATTGCGTTT TERM 301 266956 - 266933 - f 75 -13.8 -2.66711 | opp_overlap 266933 266926, overlap 266932 TTGAGAATTGAGAAG GCCCCTCGCA GCGA TGCGGGGGGC TTTTTCATTGCGTTT TM1040_0249 267190 - 267591 + | hypothetical protein TM1040_0250 267658 - 268230 + | hypothetical protein TM1040_0251 268431 - 268688 + | hypothetical protein TERM 302 268754 - 268785 + F 70 -9.5 -3.52113 | gap 1, overlap 268758 268759 ACATCGCACCAATCC TGACAGGCCTCGGA TTCGT TCCGGGGCC-GTTA TCTTTGTCGGGACAT TERM 303 268758 - 268782 + F 73 -9.2 -3.89695 | overlap 268754 268759 CGCACCAATCCTGAC AGGCCTCGGA TTCGT TCCGGGGCCG TTATCTTTGTCGGGA TERM 304 268759 - 268781 + F 75 -12.7 -2.93335 | overlap 268758 268754 GCACCAATCCTGACA GGCCTCGGA TTCGT TCCGGGGCC GTTATCTTTGTCGGG rplB 268935 - 269777 + | 50S ribosomal protein L2 TERM 305 269845 - 269835 - g 81 -4.6 -5.0133 | overlap 269844 TACGTGCTGAAAAAA GCCG AAG CAGC GCGCGATTCCGGCCG rpsS 269781 - 270059 + | 30S ribosomal protein S19 rplV 270063 - 270443 + | 50S ribosomal protein L22 rpsC 270443 - 271162 + | 30S ribosomal protein S3 rplP 271175 - 271588 + | 50S ribosomal protein L16 TERM 306 271613 - 271640 + F 100 -18.4 -5.5112 | opp_overlap 271614, overlap 271614 TCCGTAACGGATAGA ACCCCCCGCCAG GTGA CTGGCGGGGGGC TTTTTTGTTCGTGCA TERM 307 271639 - 271614 - f 100 -21.9 -3.551 | opp_overlap 271614 271613 CCGTAACGGATAGAA CCCCCCGCCAG GTGA CTGGCGGGGGG CTTTTTTGTTCGTGC TERM 308 271614 - 271639 + F 100 -21.9 -3.89587 | opp_overlap 271614, overlap 271613 CCGTAACGGATAGAA CCCCCCGCCAG GTGA CTGGCGGGGGG CTTTTTTGTTCGTGC TM1040_0257 271848 - 272147 + | hypothetical protein TM1040_0258 272252 - 272962 + | extracellular solute-binding protein TERM 309 272989 - 273027 + F 88 -15.4 -3.53012 | gap 1, overlap 272994 AACCTATTTTGGTTT CGC-AGCGCGCATGCTC GGTTCA GGGCATGCGCGTTTGCG TTTCAAAAGGCAGGG TERM 310 272994 - 273021 + F 95 -14.9 -3.84451 | overlap 272989 ATTTTGGTTTCGCAG CGCGCATGCTC GGTTCA GGGCATGCGCG TTTGCGTTTCAAAAG TM1040_0259 273110 - 273730 + | hypothetical protein TERM 311 273771 - 273797 + F 100 -17.4 -5.24129 | opp_overlap 273765 TGAAAAACCTGCATA GCTTCTCGGACA TCC TGTCCGAGAGGC TTTTTTATGGCGCGG TM1040_0260 273804 - 274844 + | succinylglutamate desuccinylase/aspartoacylase TM1040_0261 275486 - 274857 - | hypothetical protein TERM 312 275636 - 275680 + H 83 -7.8 -4.83615 | overlap 275639 CTCCTGTAGAGGGAC GCATCGCTCACCGCAATTCG CGAGT CGGATTGTGTCGGGCGATTC TTTTTCTGCACAATC TERM 313 275639 - 275677 + H 82 -8.1 -4.52873 | overlap 275636 CTGTAGAGGGACGCA TCGCTCACCGCAATTCG CGAGT CGGATTGTGTCGGGCGA TTCTTTTTCTGCACA TM1040_0262 275778 - 275978 + | 50S ribosomal protein L29 TERM 314 275971 - 275958 - f 89 -8.1 -4.86621 | overlap 275960 ATCCTGAACGAAAAA GCTGC AGCA GCAGC TGAATAAGGAGCCTC rpsQ 275991 - 276221 + | 30S ribosomal protein S17 rplN 276322 - 276690 + | 50S ribosomal protein L14 rplX 276690 - 276995 + | 50S ribosomal protein L24 rplE 276995 - 277558 + | 50S ribosomal protein L5 rpsN 277577 - 277882 + | 30S ribosomal protein S14 rpsH 277895 - 278287 + | 30S ribosomal protein S8 TERM 315 278368 - 278324 - g 93 -7.6 -5.03314 | opp_overlap 278333 CGTATTGGTAAAAAA CCGGTCGAACTGCCCAGCGG TGTTT CCGCGAGCCTGTCCGGCCAG ACCATCGAAGTGAAG rplF 278303 - 278836 + | 50S ribosomal protein L6 rplR 278848 - 279207 + | 50S ribosomal protein L18 TERM 316 279211 - 279247 + F 100 -15 -4.08216 | opp_overlap 279215 279216 CTGAAGATCTAAGGA TCAACCGGGCGCCCCG CTGGC CGGGGCGCCCGAGCGA TTTTGGAAAGAGTGG TERM 317 279243 - 279215 - f 100 -21 -3.28537 | opp_overlap 279211, overlap 279216 AGATCTAAGGATCAA CCGGGCGCCCCG CTGGC CGGGGCGCCCGA GCGATTTTGGAAAGA TERM 318 279242 - 279216 - f 100 -22.3 -2.5664 | opp_overlap 279211, overlap 279215 GATCTAAGGATCAAC CGGGCGCCCCG CTGGC CGGGGCGCCCG AGCGATTTTGGAAAG TERM 319 279415 - 279392 - g 89 -11.6 -4.21936 | GGCAGAACGTGAAAA CCGCCGCGGC AACC GCCGCGACCG TGAAGAGACACCGGA TERM 320 279853 - 279843 - g 81 -4.6 -5.0133 | opp_overlap 279846, overlap 279845 279846 279848 GACGGCCTGAAAAAA GAGC AGA GCCC GCGCTCTGTTGCTCA rpsE 279375 - 279938 + | 30S ribosomal protein S5 TERM 321 279994 - 279975 - g 70 -10 -3.5393 | ACCATCGTCGTGAAA CAGATCGG CTCG CCGATCCG TCGCCCCGCCGAACA rpmD 279951 - 280139 + | 50S ribosomal protein L30 TERM 322 280190 - 280167 - f 95 -13.8 -4.14874 | opp_overlap 280167 ACAAGACTTTGAAAA CGCCCGCGGA GAAA TCCGGGGGCG TTTTTTCGTCAGGGG TERM 323 280167 - 280190 + F 100 -13.8 -5.14563 | opp_overlap 280167 ACAAGACTTTGAAAA CGCCCGCGGA GAAA TCCGGGGGCG TTTTTTCGTCAGGGG TERM 324 280375 - 280361 - f 70 -5 -4.38129 | overlap 280363 AGATAAGGACCAAAA CACATG GCA CATGTA CTGAACACAAACATC TM1040_0273 280364 - 280579 + | hypothetical protein TERM 325 280651 - 280671 + F 100 -14.7 -5.06414 | opp_overlap 280650 280648 ATGGCCCATCAAGAG CGCCTCCAC ATC GTGGGGGCG TTTTTGTTGCGCGGG rplO 281136 - 281606 + | 50S ribosomal protein L15 TERM 326 281659 - 281692 + F 100 -14.6 -4.07568 | gap 1 ATCAGTTTTCCCATA CGCCGTCCG-AGCCG GAAAA CGGTTCCGGGCGGCG TTTTCGCAAGAAGAG TERM 327 283077 - 283052 - g 70 -4.7 -4.44667 | gap 1, overlap 283056 GGTCGGAACAAGAAA CGCACCAAACGG GGA CCGTCTCGT-CG ATGACCAATATTATT secY 281717 - 283081 + | preprotein translocase subunit SecY TM1040_0276 283078 - 283659 + | adenylate kinase TERM 328 283722 - 283701 - f 70 -11.5 -2.95274 | opp_overlap 283701, overlap 283696 283694 283692 ATGAAATAGACCAGA CAGGCTGCC CTTG GGCGGCCTG TTTTGTTTTGGACGC TERM 329 283701 - 283722 + F 100 -13.7 -5.07652 | opp_overlap 283701 283696 283694 283692 ATGAAATAGACCAGA CAGGCTGCC CTTG GGCGGCCTG TTTTGTTTTGGACGC TERM 330 284044 - 284025 - f 76 -3.5 -5.00884 | AGTGTTGTGAAAAAA GGTTCTG GAGCTA CGGAACC GCAACCAAAAAGGAA rpsM 284068 - 284436 + | 30S ribosomal protein S13 TM1040_0278 284453 - 284842 + | 30S ribosomal protein S11 TERM 331 284859 - 284887 + F 100 -19.7 -3.32769 | opp_overlap 284854 284853, overlap 284854 CGACACAAACTTTGA CTGAGGCCTTGTC TTG GACAGGGCCTCAG TTCGTCATTTGAAAC TERM 332 285845 - 285812 - g 100 -12.5 -4.42653 | gap 1 ATCTGATCCAGAAAA CCGAAGC-CGAGATGC TCC GCACCCCGAACTTCGG CCGCAAGTCCTTGAA TM1040_0279 284956 - 285972 + | DNA-directed RNA polymerase subunit alpha TERM 333 286130 - 286120 - g 85 -6.8 -4.85177 | opp_overlap 286124 AAAGGATATCAAAAA TGCG TCA CGCA CGTGGTTATCGCCGC rplQ 286119 - 286544 + | 50S ribosomal protein L17 TERM 334 286575 - 286600 + F 100 -18.3 -5.0925 | TGACCGTCTGACTTT CCCCCGCTCTG GCAA CAGGGCGGGGG TTTTTGCTTTTCGGA TM1040_0281 286665 - 287573 + | hypothetical protein TM1040_0282 287927 - 287589 - | alkylphosphonate utilization operon protein PhnA TERM 335 287943 - 287965 + r 73 -9 -3.98913 | GTCCCGTCTTTAGCG CCCCATGCGC GCC GCGCACAGGG TTATTTCAGTCTAGG TM1040_0283 288905 - 288006 - | NAD-dependent epimerase/dehydratase TERM 336 288390 - 288413 + g 76 -14.6 -2.54098 | overlap 288389 288386 288411 GATGTCGGCGCCACT GCGGCGTTGA AAGC TCAGCGCCGC CTGTTCATTGGCCAC TERM 337 289234 - 289246 + G 85 -6.9 -4.74611 | overlap 289225 289231 CTATGTGCTGCCGCT CGGCT TTG GGCCG TTGTTTTTTATGATC TM1040_0284 289070 - 289723 + | hypothetical protein TM1040_0285 291107 - 289710 - | MATE efflux family protein TERM 338 289863 - 289844 - G 74 -3.4 -4.7657 | overlap 289845 289847 289848 CAAAAAGCCCAAAAA TCACGCCG CCCA CGGCCTGG CCGATCAGCGCGCCC TERM 339 290042 - 290025 - G 78 -2.5 -5.06414 | overlap 290026 CCCGTTGAAGAAAAA CGCCAGC GCAA GCGGGCC GCAAAAGAGGTAGAT TERM 340 291394 - 291414 + H 100 -10.4 -5.4505 | gap 1, opp_overlap 291394 GAATACCACACCAAA CCGCCC-CG GGAC CGAGGGCGG TTTTTTGTTGCCCAG TERM 341 291414 - 291394 - H 79 -10.4 -3.88731 | gap 1, opp_overlap 291394 GAATACCACACCAAA CCGCCC-CG GGAC CGAGGGCGG TTTTTTGTTGCCCAG TERM 342 291784 - 291769 - g 78 -7.5 -4.59773 | GTCTACTTTGAAAAA CCGCG CACCAT CGCGG GCTGGAAGGGGCTGA TERM 343 292083 - 292038 - g 73 -9.8 -3.61398 | gap 3, opp_overlap 292068 GGTGGGCTTCAAGAA CG-GCAC-CCGCGGCAATGTGCA GAT CGC-CATTGACGCGGTGCGCTCG GCGGCCACACCGCAT TERM 344 292256 - 292233 - g 73 -5.2 -4.58395 | gap 1 TTCAGCCTGCAAAAA GGCCGAA-GCC GAT GGCATCCGTCC GCAGGTGATGATCGA TM1040_0286 291466 - 292560 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 345 292606 - 292574 - f 90 -11.9 -4.2558 | opp_overlap 292574 292575 292578 292579, overlap 292575 292580 GAGCTCGGATCAAAA CGAAACGGGGCGGTG CAC CGCCGCCCCCCTTCA TCTTCTGACCAAAAT TERM 346 292605 - 292575 - f 75 -13.2 -3.15027 | opp_overlap 292575 292574 292578 292579, overlap 292574 292580 AGCTCGGATCAAAAC GAAACGGGGCGGTG CAC CGCCGCCCCCCTTC ATCTTCTGACCAAAA TERM 347 292575 - 292605 + F 72 -13.2 -2.52623 | opp_overlap 292574 292575 292580, overlap 292574 292578 292579 AGCTCGGATCAAAAC GAAACGGGGCGGTG CAC CGCCGCCCCCCTTC ATCTTCTGACCAAAA TERM 348 292579 - 292601 + F 73 -12.6 -2.64726 | opp_overlap 292575 292574 292580, overlap 292578 292575 292574 CGGATCAAAACGAAA CGGGGCGGTG CAC CGCCGCCCCC CTTCATCTTCTGACC TERM 349 292600 - 292580 - f 78 -13.9 -3.13546 | opp_overlap 292579 292578 292575 292574, overlap 292575 292574 GGATCAAAACGAAAC GGGGCGGTG CAC CGCCGCCCC CCTTCATCTTCTGAC TM1040_0287 292758 - 294155 + | peptidase S1C, Do TM1040_0288 294157 - 295488 + | recombination factor protein RarA TERM 350 295513 - 295490 - T 89 -12.6 -3.889 | GCCAAGGAGAGTAAA TCAGGTTTTG CGGA CAAAACCTGA AGGCCTCCGGCGGGG TERM 351 295576 - 295549 - T 83 -9.9 -4.30719 | gap 1 TTCTGTTAGAAGAAA GGGCG-GCGTCA GGCTG TGACGCGCACCC ATGTGCCCATGCCCG TM1040_0289 296987 - 295557 - | multicopper oxidase, type 3 TERM 352 297221 - 297263 + G 73 -10.4 -3.60296 | overlap 297221 297253 CGCAAGCTGTCGCTA CCTGATCGGTGTCGGCGTGC TGC GCGCGCTGGGACCGACGGGG TTTCCGGTCGGGGTG TERM 353 297221 - 297262 + G 73 -13.7 -2.75963 | gap 1, overlap 297221 297253 CGCAAGCTGTCGCTA CCTGATCGGTGTCGGCGTGC TGC GCGCGCTGGGACCGA-CGGG GTTTCCGGTCGGGGT TM1040_0290 297078 - 297542 + | camphor resistance protein CrcB TERM 354 297572 - 297611 + G 80 -14.3 -3.03771 | gap 1, opp_overlap 297555 297572 297574, overlap 297574 ATCACCGTGACCGAA GACGACGGCGGCCAGCGG ATCGA CCGCTGGTTGCGG-CGTC TGTTCCCGCATGTGA TM1040_0291 297539 - 298585 + | ribosomal large subunit pseudouridine synthase C TM1040_0292 298582 - 299250 + | HAD family hydrolase TM1040_0293 299318 - 300022 + | ATP12 ATPase TERM 355 300075 - 300096 + F 84 -13.7 -3.55444 | overlap 300087 TTGCGACATCGATGG CGGCGTTCC GGTC GGAGCGCCG TTTGCCGAATCGCGC TERM 356 300256 - 300243 - f 79 -9.5 -4.07687 | opp_overlap 300243, overlap 300230 300229 ACTCGGCCTCGAAAA CGGGG CCAA CCCCG TTTCAAACAGCCCGC TERM 357 300243 - 300256 + F 70 -9.5 -3.53012 | opp_overlap 300230 300229 300243 ACTCGGCCTCGAAAA CGGGG CCAA CCCCG TTTCAAACAGCCCGC TM1040_0294 300335 - 301351 + | lysine-arginine-ornithine-binding periplasmic protein TERM 358 301400 - 301362 - f 79 -14.7 -2.82595 | gap 1, opp_overlap 301369, overlap 301369 GTTAATTAGCGAAAC CGGAA-AAGGGCGTGAGG TTCT CCTCGCGCCCTTCTTCCA AGTTAAAGAATAACG TERM 359 301392 - 301369 - f 95 -13.8 -4.24404 | opp_overlap 301369, overlap 301362 AGCGAAACCGGAAAA GGGCGTGAGG TTCT CCTCGCGCCC TTCTTCCAAGTTAAA TERM 360 301369 - 301392 + F 91 -16 -3.65314 | opp_overlap 301362 301369 AGCGAAACCGGAAAA GGGCGTGAGG TTCT CCTCGCGCCC TTCTTCCAAGTTAAA TM1040_0295 301493 - 302761 + | amino acid ABC transporter permease TM1040_0296 302763 - 304091 + | amino acid ABC transporter permease TM1040_0297 304104 - 304895 + | ABC transporter related TERM 361 304946 - 304910 - T 100 -19.5 -3.53563 | opp_overlap 304911 304919, overlap 304911 304914 304919 AGATCTGTTGTCAAA TTGAGAAAAGGCCGGGC GAT GCCCGGCCTTTTCGCAT GGTATGGGGGGAGGG TERM 362 304911 - 304945 + T 100 -23 -2.62184 | opp_overlap 304910 304911 304914 304919, overlap 304919 GATCTGTTGTCAAAT TGAGAAAAGGCCGGGC GAT GCCCGGCCTTTTCGCA TGGTATGGGGGGAGG TERM 363 304945 - 304911 - T 100 -23 -2.71924 | opp_overlap 304911 304919, overlap 304910 304914 304919 GATCTGTTGTCAAAT TGAGAAAAGGCCGGGC GAT GCCCGGCCTTTTCGCA TGGTATGGGGGGAGG TERM 364 304942 - 304914 - T 100 -23.3 -2.64155 | opp_overlap 304911 304919, overlap 304911 304910 304919 CTGTTGTCAAATTGA GAAAAGGCCGGGC GAT GCCCGGCCTTTTC GCATGGTATGGGGGG TERM 365 304937 - 304919 - T 100 -17.4 -4.51196 | opp_overlap 304919 304911, overlap 304914 304911 304910 GTCAAATTGAGAAAA GGCCGGGC GAT GCCCGGCC TTTTCGCATGGTATG TERM 366 304919 - 304937 + T 100 -17.4 -4.16279 | opp_overlap 304914 304911 304910 304919, overlap 304911 GTCAAATTGAGAAAA GGCCGGGC GAT GCCCGGCC TTTTCGCATGGTATG TERM 367 304959 - 304973 + T 81 -12.8 -3.54424 | CATGGTATGGGGGGA GGGGGC GCT GCCCCC TTTCGAGCCCTGCGG TERM 368 305057 - 305016 - T 71 -4.3 -4.61231 | opp_overlap 305023 305024, overlap 305026 GGATATTTTCAAAAA GCTGAAGGCAGAGCGCA GTTGCTTT TGCGCTCCGGTTCCTGC GTCAGCTTGGTAGGC TM1040_0298 305484 - 305059 - | GCN5-related N-acetyltransferase TERM 369 305312 - 305266 - G 84 -8.7 -4.44667 | gap 1, overlap 305269 305307 GTCTGGAAGAACAAA CAGCCCGCCGACCTCATTGCCC AAGA GTGCGATGAAGCCAACGGG-TG TGGCACCCGGCGCGA TERM 370 305659 - 305688 + r 71 -9.1 -3.78934 | CTGAGCTAGAGCCTA CCGCGCGGGGCCT CTGC AGGCAAGGCGCGG TTATTCTCCCAAGAG TM1040_0299 306186 - 305689 - | putative phosphohistidine phosphatase, SixA TM1040_0300 306878 - 306183 - | hypothetical protein TERM 371 306913 - 306944 + r 73 -8.6 -4.03234 | gap 1, overlap 306914 CCGGGCGTTCTGGCA AGCCTGCGCGCAGAC AAG GGCTGCGCG-GGGCA TTTGTATCGGCCGGG TERM 372 306914 - 306943 + r 73 -12.1 -3.01726 | gap 1, overlap 306913 CGGGCGTTCTGGCAA GCCTGCGCGCAGAC AAG GGCTGCGCG-GGGC ATTTGTATCGGCCGG TM1040_0301 307867 - 307007 - | acetylglutamate kinase TERM 373 307282 - 307310 + g 76 -12.3 -3.37017 | overlap 307270 CGGCCTTGAGTGCGG CGGCCACGGCGCC TGC GGCGGTGTCGCCG TTGATGTTGAAGGTT TM1040_0302 308089 - 308820 + | short-chain dehydrogenase/reductase SDR TM1040_0303 310279 - 308867 - | PepSY-associated TM helix TM1040_0304 310680 - 310348 - | hypothetical protein TM1040_0305 311365 - 310715 - | GTPase EngB TERM 374 310748 - 310762 + g 79 -7.8 -4.56775 | overlap 310753 310754 AATCGAGCGCAGGGT GGCGAT GCC GTCGCC TTTTTCCGAGGAGGT TM1040_0306 312102 - 311365 - | MOSC domain-containing protein TERM 375 311950 - 311920 - G 71 -9.7 -3.72893 | gap 1, overlap 311936 CAGTTCGGGACCAAA GCAGCCGCG-CGCA AAAT TGCGGCAAGGCTGC CATGCGCCGGTGTCC TERM 376 312087 - 312101 + g 77 -8.6 -4.33851 | GCCGCCACATTTGTC TGACAG TTG CTGTCA TTTCTTCTCGGCTTT TM1040_0307 313925 - 312099 - | putative inner membrane protein translocase component YidC TM1040_0308 315850 - 314351 - | diguanylate cyclase/phosphodiesterase TM1040_0309 316850 - 315963 - | PP-loop TERM 377 316280 - 316269 - G 71 -5.8 -4.32857 | opp_overlap 316269, overlap 316265 316263 CGGGCGAAACACAAA GAGG TCCC CCTC TTCGTTCACCAGCTT TM1040_0310 316985 - 317530 + | hypothetical protein TM1040_0311 317787 - 317527 - | hypothetical protein TM1040_0312 318423 - 317986 - | ribonuclease P protein component TERM 378 318277 - 318297 + g 71 -8.9 -3.72576 | CTTGCGCGCCCGAGC CGCAGCGAG GAA TTCGCCGCG TTTGGTCAGCAAAAC rpmH 318610 - 318476 - | 50S ribosomal protein L34 TERM 379 318775 - 318760 - H 72 -2.4 -5.00884 | opp_overlap 318774 318774, overlap 318762 318765 ATTTCTGTTAAAAAA CGCAAG CGAC CGCGCG GGTGGCCCGTCTTGG TERM 380 318893 - 318906 + H 70 -5.3 -4.46212 | overlap 318876 TCGCCCGTTGCGGTG CTGAA ATGT TTCAG TTTTGTCATCAAGGC TERM 381 318991 - 318957 - H 74 -12.1 -3.16055 | gap 1 GAAACGGGTCATCAA GCGGGCGTGAGGG-TG CGCG CATCCCTCTCGCCAGC GCCACATCTGGGAGG TERM 382 319416 - 319443 + G 73 -9 -3.86346 | ATGGCGATCTTTCTG GCGGCGCGCTGG GGGC TTGGCGCGGCGC TTTCTGCCAAGATCG TERM 383 319738 - 319752 + G 70 -10 -3.55444 | AGCCCCATATCATCG GTCCGA TCC TCGGAC TTTGCGCGCTGGCGG TM1040_0314 319077 - 319814 + | hypothetical protein TERM 384 320337 - 320297 - g 74 -12.6 -3.16564 | opp_overlap 320294 GCCCTACCTGACCAA TGAGACGCTCTGGGCGCT GAACG AGCGGCCTGAACATCTCA TCGTGATTGGCGGCG TM1040_0315 319818 - 321233 + | pyridine nucleotide-disulphide oxidoreductase dimerisation region TM1040_0316 321251 - 322636 + | periplasmic sensor signal transduction histidine kinase TERM 385 323121 - 323107 - f 70 -5.6 -4.41348 | opp_overlap 323110, overlap 323108 323109 GCCCGGTCAAATAAA CTGCCC TCG GGGAAG GCCAGAGGCGTTTGG TERM 386 323190 - 323165 - f 70 -5.3 -4.3739 | opp_overlap 323172 323188, overlap 323170 CACTGGCCCACAAAA CAGAAGCGGCG GGGC CGCCAGTCCCG CCTTAGTGTTGCGGT TERM 387 323182 - 323170 - f 79 -10.5 -4.02581 | opp_overlap 323172, overlap 323165 GCCCACAAAACAGAA GCGGC GGG GCCGC CAGTCCCGCCTTAGT TERM 388 323172 - 323192 + F 77 -11.8 -3.37245 | opp_overlap 323170 323165, overlap 323188 CCACAAAACAGAAGC GGCGGGGC CGCCA GTCCCGCC TTAGTGTTGCGGTCA TERM 389 324027 - 324044 + G 81 -4.9 -4.93877 | overlap 324038 ATGGAAGCCTAGCCA GTTTTTC TGAC GAAAGAC TTTTCTTTGCTAAGC TM1040_0317 323531 - 324073 + | hypothetical protein TM1040_0318 324245 - 324664 + | hypothetical protein TM1040_0319 324863 - 325447 + | TetR family transcriptional regulator TM1040_0320 325584 - 326150 + | carboxymuconolactone decarboxylase TERM 390 326142 - 326131 - f 72 -5.8 -4.36914 | overlap 326133 TTGCCTGGGAGAAAA CAGC CGTC GCTG CGGAATAACGCCCAC TM1040_0321 326224 - 326781 + | redoxin TERM 391 326773 - 326761 - T 71 -9.1 -3.73224 | GGATGTTCGATCAAA TGGCG CAG CGCCA GAGGTTGAGGCCCGA TM1040_0322 327740 - 326868 - | LysR family transcriptional regulator TERM 392 327784 - 327766 - H 72 -3.9 -4.77173 | gap 1, opp_overlap 327779, overlap 327768 GGGTGAGAAAAGAAA TC-TCAGC ATGG GCTGACGA ATGGTCATTTGTTTT TERM 393 327779 - 327791 + H 74 -3.4 -4.86385 | opp_overlap 327768 327766 AATCTCAGCATGGGC TGAC GAATG GTCA TTTGTTTTTCGGCCT TM1040_0323 327846 - 328961 + | twin-arginine translocation pathway signal TERM 394 329133 - 329159 + G 85 -5.6 -5.0538 | overlap 329135 CGGGCGCTCTGGGTG CTGCCGCTGCCG GTC TGGCTGCTGCTG TTTTTTGCGGTGCCG TERM 395 329135 - 329157 + G 71 -6.8 -4.15748 | overlap 329133 GGCGCTCTGGGTGCT GCCGCTGCCG GTC TGGCTGCTGC TGTTTTTTGCGGTGC TM1040_0324 329049 - 329936 + | binding-protein-dependent transport systems inner membrane component TERM 396 330298 - 330314 + G 77 -3.5 -4.9792 | CGCTGGTGATCCTGG GGCTTGC CAT GCTCGCC TTTTTCTCTCGCATC TM1040_0325 329940 - 330761 + | binding-protein-dependent transport systems inner membrane component TM1040_0326 330758 - 331876 + | ABC transporter related TM1040_0327 331873 - 333141 + | amidase TM1040_0328 333138 - 334046 + | polysaccharide deacetylase TM1040_0329 334033 - 334734 + | hypothetical protein TM1040_0330 335477 - 334809 - | (Acyl-carrier protein) phosphodiesterase TM1040_0331 335647 - 336549 + | LysR family transcriptional regulator TM1040_0332 337442 - 336588 - | LysR family transcriptional regulator TM1040_0333 337542 - 338690 + | gamma-butyrobetaine,2-oxoglutarate dioxygenase TM1040_0334 338687 - 339277 + | hypothetical protein TERM 397 339401 - 339430 + T 70 -12.2 -2.69799 | overlap 339404 339407 CTTGATCTTTGCCCC CAGCAGCCAGGC TTTGAC GCCTGGTTGTTG TCATGTGTGAGGTGG TERM 398 339404 - 339427 + T 72 -10.3 -3.49777 | overlap 339401 339407 GATCTTTGCCCCCAG CAGCCAGGC TTTGAC GCCTGGTTG TTGTCATGTGTGAGG TERM 399 339407 - 339424 + T 71 -8.4 -3.88175 | overlap 339404 339401 CTTTGCCCCCAGCAG CCAGGC TTTGAC GCCTGG TTGTTGTCATGTGTG TM1040_0335 339937 - 339509 - | hypothetical protein TM1040_0336 341264 - 339939 - | major facilitator transporter TERM 400 340653 - 340687 + g 74 -12.8 -3.17723 | opp_overlap 340651 GTAGATCCGAATACC GCGTGTGGTGCGGG CATAGAT CCCGCGCCGCGTGC TTGGCTTGGGGCTGG TM1040_0337 341517 - 341957 + | 3-dehydroquinate dehydratase TERM 401 342027 - 342042 + F 73 -8.2 -4.10855 | overlap 342040 GCGGGGTAGCACTGT CTGCGG GTGG CCGCGG TTTTGCACCGGTTTT TERM 402 342163 - 342175 + F 100 -6.2 -5.72207 | GTCTCACATTTTGTC CCCG CACGT CGGG TTTTTTTGGTTTGCG TM1040_0338 342242 - 343732 + | NCS1 nucleoside transporter TERM 403 343738 - 343766 + F 84 -13.8 -3.66908 | opp_overlap 343737 343736, overlap 343735 TAACAAATAACAACT GTTGCTCCGGGG GAAGA CCCCGGAGCGCC TTGATTTTAGCGCCA TERM 404 344198 - 344210 + G 89 -4.7 -5.26316 | overlap 344197 ATTTTGGCGGCCAGC CGCGC GGA GCGGG TTTTTTGTCCGATGA TM1040_0339 343924 - 344769 + | hypothetical protein TERM 405 345103 - 345088 - g 70 -10.4 -3.53811 | GCCATCGGCCCCAAA CCCGGA TCGA TCCGGG TGGGGATGCGGCTGG TM1040_0340 344893 - 345972 + | peptidoglycan-binding LysM TM1040_0341 345984 - 347057 + | hypothetical protein TERM 406 347728 - 347749 + G 76 -9.4 -4.06904 | overlap 347724 GGCCGGTCCGGTGAA CCTCGTGC AAGGGG GCACGGGG TTTATCATTCGCTAC TM1040_0342 347255 - 349738 + | multi-sensor hybrid histidine kinase TERM 407 349801 - 349837 + T 70 -11 -2.94144 | opp_overlap 349801 349806, overlap 349806 CGTCATACCCAATCA GAAAACCCAAGGCC GCAAACACG GGCCTTGGGTTTTA TCGTTTGGATGCGCG TERM 408 349806 - 349832 + T 93 -10.9 -4.62168 | opp_overlap 349801 349806, overlap 349801 TACCCAATCAGAAAA CCCAAGGCC GCAAACACG GGCCTTGGG TTTTATCGTTTGGAT TERM 409 349832 - 349806 - T 93 -10.9 -4.55491 | gap 1, opp_overlap 349806 349801, overlap 349801 TACCCAATCAGAAAA CCCAAGG-CCGC AAAC ACGGGCCTTGGG TTTTATCGTTTGGAT TM1040_0343 350665 - 349883 - | hemin importer ATP-binding subunit TM1040_0344 351750 - 350662 - | transport system permease protein TERM 410 351363 - 351331 - G 73 -9 -3.88015 | overlap 351324 TACATAATGACCAAA GAGGCCCTGCACCC CGACC GGAAGCAGGCCCCC GAGAACAATCGACAG TM1040_0345 352602 - 351754 - | periplasmic binding protein TM1040_0346 353681 - 352602 - | hemin-degrading TERM 411 353949 - 353959 + G 70 -4.6 -4.47328 | opp_overlap 353949 GCAAATCAAAGACAT GCGC GGG GTGC TTTTGTGCTCCGCTT TM1040_0347 353932 - 355944 + | TonB-dependent receptor, plug TM1040_0348 355964 - 356425 + | hypothetical protein TERM 412 356803 - 356821 + G 76 -12.4 -3.34029 | overlap 356815 GGGTTTCTGGATCTG GTGGCGCA ACT TGCGCCGC TTATCGGGCTGTTTG TM1040_0349 356422 - 357102 + | MotA/TolQ/ExbB proton channel TM1040_0350 357102 - 357494 + | biopolymer transport protein ExbD/TolR TERM 413 357855 - 357837 - g 74 -11.7 -3.53298 | overlap 357833 ACCATCGCAAAGGAA CTGCGCC GGCTT GGCGCAG AACGGGTGACACTCT TM1040_0351 357498 - 357893 + | hypothetical protein TM1040_0352 357890 - 358804 + | TonB-like TM1040_0353 359538 - 358801 - | hypothetical protein TM1040_0354 360473 - 359541 - | LysR family transcriptional regulator TM1040_0355 360576 - 361823 + | D-amino-acid dehydrogenase TM1040_0356 361863 - 362840 + | TRAP dicarboxylate transporter- DctP subunit TERM 414 362846 - 362880 + F 75 -12.8 -2.89881 | opp_overlap 362842 GGCCAACTGAACCGT ATTGCCGCCTTGGCCT TCG GGGCGAAGGCGGCAGC TGTCTGAGATCCGTC TM1040_0357 363053 - 363667 + | hypothetical protein TERM 415 364509 - 364521 + G 73 -9.1 -3.99324 | overlap 364519 CGCGACGCGTACCTC GGCGA TGA TCGCC TTTATCCTGATGGGG TM1040_0358 363664 - 364962 + | TRAP dicarboxylate transporter- DctM subunit TERM 416 365008 - 364973 - f 100 -18.5 -4.59773 | gap 1, opp_overlap 364973 364980 365004 365006 GTTGATCCGTAAAAA CGC-CAAAGGCCCTTC TGCGT GAAGGGCCTTTGTGCG CAGCGCTGTGCTGTC TERM 417 364980 - 365000 + F 85 -12.6 -3.85817 | opp_overlap 364973, overlap 364973 CGTAAAAACGCCAAA GGCCCTTC TGCGT GAAGGGCC TTTGTGCGCAGCGCT TM1040_0359 365386 - 368169 + | methyl-accepting chemotaxis sensory transducer TERM 418 368228 - 368195 - f 93 -16.7 -3.37959 | gap 1, opp_overlap 368196 368198, overlap 368198 CAATCTGAACACGAA GCACCCCGGCAGGCCC ACT GTGCCCGCCGGGGT-C TTTTTATGCCTCGAG TERM 419 368196 - 368228 + F 100 -14.7 -4.87665 | opp_overlap 368195 368198, overlap 368198 AATCTGAACACGAAG CACCCCGGCAGGCCC ACT GTGCCCGCCGGGGTC TTTTTATGCCTCGAG TERM 420 368198 - 368226 + F 100 -17.3 -4.06182 | opp_overlap 368195 368198, overlap 368196 TCTGAACACGAAGCA CCCCGGCAGGCCC ACT GTGCCCGCCGGGG TCTTTTTATGCCTCG TERM 421 368226 - 368198 - f 95 -19.5 -2.84723 | opp_overlap 368198 368196, overlap 368195 TCTGAACACGAAGCA CCCCGGCAGGCCC ACT GTGCCCGCCGGGG TCTTTTTATGCCTCG TM1040_0360 368350 - 370440 + | short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase TM1040_0361 370462 - 371640 + | Acetyl-CoA C-acyltransferase TERM 422 372596 - 372637 + G 77 -8.1 -4.31164 | gap 2, opp_overlap 372577 GAAGCTGCTCACGGG GCACG-CGGTTTC-GGCCG TAGCGT CGGCCTGAGATTGACGTGC TTTCTGTTCTGTCGG TM1040_0362 371829 - 372626 + | IclR family transcriptional regulator TERM 423 373648 - 373681 + G 77 -11.7 -3.57119 | gap 1, overlap 373650 373651 GTCCGCGCAGGCCCG GCTCGACACCGCAGCG GTG CG-TGCGGTGTCGCTC TTTGCGCAGTATCTC TERM 424 373650 - 373679 + G 76 -12.9 -3.36073 | gap 1, overlap 373648 373651 CCGCGCAGGCCCGGC TCGACACCGCAGCG GTG CG-TGCGGTGTCGC TCTTTGCGCAGTATC TERM 425 373651 - 373678 + G 78 -16.4 -2.61322 | gap 1, overlap 373650 373648 CGCGCAGGCCCGGCT CGACACCGCAGCG GTG CG-TGCGGTGTCG CTCTTTGCGCAGTAT TM1040_0363 372959 - 373921 + | glucokinase TM1040_0364 374058 - 374852 + | hypothetical protein TM1040_0365 375625 - 374933 - | GntR family transcriptional regulator TERM 426 375607 - 375629 + g 100 -17.8 -3.72695 | CTTGCTCCGGAGGGT TGGGGTGGCT CAG AGCCACCCCA TTTGCTCCGCGAGAT TM1040_0366 376452 - 375616 - | hypothetical protein TM1040_0367 377822 - 376581 - | ROK domain-containing protein TM1040_0368 377973 - 378989 + | periplasmic binding protein/LacI transcriptional regulator TERM 427 379023 - 379001 - f 95 -16.3 -3.65902 | CTGATTTGACCCAAA GGCGAGGCC CACGC GGCCTCGCC TGATCCGGAAATGAC TERM 428 379092 - 379115 + F 74 -10.9 -3.6106 | opp_overlap 379090, overlap 379093 AGCACTCAATTCAGT TGGGCGGCG CGCCTT CGCCGCCCC TTTGGCCCTATTACA TERM 429 379093 - 379114 + F 79 -14.4 -2.76315 | opp_overlap 379090, overlap 379092 GCACTCAATTCAGTT GGGCGGCG CGCCTT CGCCGCCC CTTTGGCCCTATTAC TERM 430 379169 - 379144 - f 81 -4.8 -5.03945 | gap 2, opp_overlap 379147 379149, overlap 379148 379149 CAACAATGATAAAAA CAAA-C-CCCGC CGTT GCGGGTGATTTG GAGGAGTATGATGTC TERM 431 379163 - 379148 - f 82 -6 -5.00267 | opp_overlap 379147 379149, overlap 379144 379149 AATGATAAAAACAAA CCCCGC CGTT GCGGGT GATTTGGAGGAGTAT TERM 432 379162 - 379149 - f 72 -9.5 -3.5772 | opp_overlap 379149 379147, overlap 379148 379144 ATGATAAAAACAAAC CCCGC CGTT GCGGG TGATTTGGAGGAGTA TERM 433 379532 - 379564 + G 74 -7.5 -4.36914 | TTACATTCCGCTATG GCCTGCCGCCAACCC TTG GGGTGGCCTGTGGGC TTTTGTGCGGCACGC TM1040_0369 379177 - 380241 + | inner-membrane translocator TM1040_0370 380238 - 381017 + | ABC transporter related frcK 381014 - 381637 + | putative fructose transport system kinase TM1040_0372 381666 - 382331 + | hypothetical protein TERM 434 382376 - 382356 - T 81 -12.5 -3.59979 | opp_overlap 382359, overlap 382359 TGGTTTTATGCGAAA CACCGGGGC GGC GCCCCGCTG CGCCCGTTTGATGTC TERM 435 382373 - 382359 - T 73 -12.8 -2.62613 | opp_overlap 382359, overlap 382356 TTTTATGCGAAACAC CGGGGC GGC GCCCCG CTGCGCCCGTTTGAT TERM 436 382359 - 382382 + T 83 -12.4 -3.83026 | gap 1, opp_overlap 382359 382356 TTTTATGCGAAACAC CGGG-GCGGCG CCC CGCTGCGCCCG TTTGATGTCGCGAGA TM1040_0373 383410 - 382535 - | NAD-dependent epimerase/dehydratase TM1040_0374 383897 - 383481 - | glutathione-dependent formaldehyde-activating, GFA TERM 437 383973 - 384012 + r 78 -12 -3.50572 | opp_overlap 383974, overlap 383974 CCTGGGTCTGTAGAA ATGCCACCGGGCGCCGCT GGCT AGCGGCGCCCGGTACAAG TTCTGTAAGATCGGT TERM 438 384010 - 383974 - R 100 -21 -3.85698 | gap 1, opp_overlap 383973 383974 CTGGGTCTGTAGAAA TGCCACCGGGCGCCGCT GGCT AGCGGCGCCCGGTA-CA AGTTCTGTAAGATCG TERM 439 383974 - 384011 + r 82 -15.5 -2.70022 | opp_overlap 383974, overlap 383973 CTGGGTCTGTAGAAA TGCCACCGGGCGCCGCT GGCT AGCGGCGCCCGGTACAA GTTCTGTAAGATCGG TM1040_0375 384685 - 384038 - | 2-keto-3-deoxy-phosphogluconate aldolase TM1040_0376 386501 - 384690 - | phosphogluconate dehydratase TM1040_0377 387985 - 386534 - | glucose-6-phosphate 1-dehydrogenase TERM 440 387176 - 387190 + g 72 -2.1 -4.8622 | overlap 387168 CACGGGTACGAGGCT CTCGA TTACC TTGAG TTTTTCATTGCGCAC TM1040_0378 389620 - 388010 - | glucose-6-phosphate isomerase TM1040_0379 390131 - 389724 - | hypothetical protein TERM 441 390181 - 390216 + r 100 -14.1 -4.03234 | overlap 390168 TCCCCGACACCTCGT GAG-ACGCCGCTTCGGG TTTG CCCG-GGCGGCGTTCTC TTTATGTCACCGCGC TM1040_0380 390859 - 390218 - | urease accessory protein UreG TM1040_0381 391500 - 390856 - | urease accessory protein UreF TERM 442 391465 - 391439 - G 75 -7.9 -4.28254 | TGCGAATAGGCAAAA GCCCCCACCGG ATAGG CCGGCGAAAGC CATTGCATCAGCTTC TM1040_0382 392020 - 391490 - | UreE urease accessory-like TERM 443 392018 - 392044 + g 78 -5 -4.7254 | opp_overlap 392005, overlap 391999 392020 CAGCCGGGGGGCGCT CATGATCGGCCC CCC GCGCTGGTCAGG TTTTTGATGCGCGAT TM1040_0383 392297 - 392070 - | hypothetical protein TERM 444 392248 - 392235 - G 79 -8.1 -4.57341 | AATCGCGCGGAAAAA GCCTG CGAT CAGGC CGAACGGATTGAAGG TM1040_0384 393050 - 392436 - | hypothetical protein ureC 394794 - 393082 - | urease subunit alpha TM1040_0386 395212 - 394907 - | urease, beta subunit TERM 445 395260 - 395235 - R 83 -11.1 -3.8901 | overlap 395227 TCCGAAACCACGAAA TGGTGCCACCG ACCA CGGCGGCAGCA AGGATGAGGGCAATC TM1040_0387 395704 - 395402 - | urease, gamma subunit TERM 446 395666 - 395680 + g 81 -4.2 -4.99638 | overlap 395650 395649 TTCGGCCGCCATCGC GACCAG AAG CTTGTC TTTTTCTCTCGGTGT TM1040_0388 396619 - 395726 - | urease accessory protein UreD TERM 447 396802 - 396821 + H 85 -12.1 -3.89614 | AGGCATTCTTGGGTC GCGGGCG CACTCC CGCCCGC TTTGTCCGCATTGAA TM1040_0389 396997 - 398121 + | L-carnitine dehydratase/bile acid-inducible protein F TM1040_0390 398918 - 398118 - | hypothetical protein TERM 448 398635 - 398617 - G 71 -6.6 -4.1673 | overlap 398618 TAACTGCCCAAGAAA CGGCGCAA GAT TCGCGCCT GATCGGCAAAGCCTG TM1040_0391 399046 - 401052 + | peptidase S15 TERM 449 401069 - 401098 + T 70 -10 -3.41878 | gap 1, opp_overlap 401070 401072, overlap 401070 401071 CGCGGCGGTTACAAA AGA-GCCCACCGC GTGCG GCGGTGGGCGTCA TTCTGCGTTGAGCGA TERM 450 401070 - 401097 + T 75 -13.5 -2.64912 | gap 1, opp_overlap 401070 401072, overlap 401069 401071 GCGGCGGTTACAAAA GA-GCCCACCGC GTGCG GCGGTGGGCGTC ATTCTGCGTTGAGCG TERM 451 401097 - 401070 - T 95 -13.5 -4.36914 | gap 1, opp_overlap 401070 401069 401071, overlap 401072 GCGGCGGTTACAAAA GA-GCCCACCGC GTGCG GCGGTGGGCGTC ATTCTGCGTTGAGCG TERM 452 401071 - 401095 + T 74 -12.8 -2.86539 | opp_overlap 401070 401072, overlap 401070 401069 CGGCGGTTACAAAAG AGCCCACCGC GTGCG GCGGTGGGCG TCATTCTGCGTTGAG TERM 453 401094 - 401072 - T 100 -16.3 -3.79419 | opp_overlap 401071 401070 401069, overlap 401070 GGCGGTTACAAAAGA GCCCACCGC GTGCG GCGGTGGGC GTCATTCTGCGTTGA TM1040_0392 401666 - 401118 - | hypothetical protein TM1040_0393 402266 - 401790 - | hypothetical protein TM1040_0394 402986 - 402282 - | hypothetical protein TM1040_0395 404047 - 402983 - | Mrp/NBP35 family protein TERM 454 404086 - 404100 + r 74 -11.4 -3.28712 | TATTACGGTCTCGCG CGGGCA TGG TGCCCG TTGTGGGCGCGGGGG TM1040_0396 406101 - 404143 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 455 405646 - 405678 + g 77 -3.4 -4.91109 | overlap 405648 TTCTGCAGCATCGGT CAGCAGGACGGT GACGCCAAG ACTGTCTTGCAG TTTTTCTGCTGCCGG TERM 456 406370 - 406398 + G 76 -9.6 -4.07885 | gap 1 AAATGCTCAATCTGG GGGCACTGTGTGC TTTC GCATGCAG-GCCC TTTTGCGGCAAGCTA TERM 457 406901 - 406882 - g 83 -2.7 -5.17576 | overlap 406885 GAGGAATTCAAAAAA CGACGCC GCGATA GGCAACG CGTGGATCTCGAAGA TM1040_0397 406357 - 407001 + | hypothetical protein TM1040_0398 406998 - 407654 + | hypothetical protein TM1040_0399 407651 - 408277 + | cytoplasmic chaperone TorD TERM 458 408475 - 408429 - g 79 -12.2 -3.54424 | overlap 408430 408442 CGCGACTTTCTGAAA CTGGCTGCAACCACCACGCCCG CTG CGGTAGTGGCGCTTGCAACCAC CGGAGGCGAGGCGGA TERM 459 408474 - 408430 - g 79 -15.7 -2.72511 | overlap 408429 408442 GCGACTTTCTGAAAC TGGCTGCAACCACCACGCCCG CTG CGGTAGTGGCGCTTGCAACCA CCGGAGGCGAGGCGG TM1040_0400 408384 - 408572 + | twin-arginine translocation pathway signal TERM 460 408559 - 408580 + F 71 -6.5 -4.30978 | opp_overlap 408559, overlap 408554 GCGCTTATTACGACA GCACCCGGT TCTG ATCGGTTGC TTTTCGTGCCTTGGC TERM 461 409452 - 409473 + G 70 -10.1 -3.55444 | opp_overlap 409444 AAGAGAACAACGCGC CGCTGATCG TCTG CGATCCGCG TTTCACGCGTACGGC TM1040_0401 408686 - 411580 + | formate dehydrogenase alpha subunit TM1040_0402 411594 - 412187 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 462 412261 - 412209 - f 95 -13.4 -4.13767 | gap 1, opp_overlap 412209 412222, overlap 412218 CTTTTGATCCCAAAA CGCCTACAACGGGAGGCGGCCCGCC GTTT GGCGGGCC-CCTTCCGCTATACGAA TAATTCATCTTAACA TERM 463 412252 - 412218 - f 100 -19.3 -3.36518 | gap 1, opp_overlap 412209 412222, overlap 412209 CCAAAACGCCTACAA CGGGAGGCGGCCCGCC GTTT GGCGGGCC-CCTTCCG CTATACGAATAATTC TM1040_0403 412303 - 413517 + | formate dehydrogenase gamma subunit TM1040_0404 413522 - 414805 + | cytochrome c, class I TERM 464 415802 - 415814 + G 80 -3.3 -5.06414 | CGAACGTGATATTCC GCTCA ACC TGCGC TTTTTGTTGGCCACC TM1040_0405 414942 - 416294 + | two component, sigma54 specific, Fis family transcriptional regulator TM1040_0406 418301 - 416325 - | periplasmic sensor signal transduction histidine kinase TM1040_0407 419141 - 418401 - | short-chain dehydrogenase/reductase SDR TERM 465 418555 - 418539 - G 70 -10.8 -3.54307 | overlap 418550 AACATTGCCCTGAAA CGGGGC GGAAA GCCCCG TGTCCACGGTGCCGG TM1040_0408 419860 - 419138 - | short-chain dehydrogenase/reductase SDR TM1040_0409 420426 - 419857 - | hypothetical protein TM1040_0410 421640 - 420423 - | sodium:galactoside symporter family protein TERM 466 421265 - 421282 + g 88 -14.1 -3.57144 | TCAGCCCGTTTCCCT GCGCCGC CAGT GCGGCGC TTTGCCCGTAAAACA TERM 467 421386 - 421350 - G 79 -12.9 -3.53343 | AAGGGCTGCGGTAAA CCACACCGTGCTGCCCG TCT CGGGCCGCAGCGTGTAG AGCATCACAAACCCC TM1040_0411 422185 - 421643 - | hypothetical protein TM1040_0412 423335 - 422175 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 468 422291 - 422275 - G 71 -6.5 -4.1552 | CAGTTGCGCAAGAAA CTCTGGT CAT ACCCGAG ACCAAGCACCTTGTC TM1040_0413 424114 - 423335 - | hypothetical protein TERM 469 423520 - 423533 + g 72 -2.3 -4.83615 | overlap 423509 TCAGGGTTGCGATGA CGCCT TCGG AGCCG TTTTTGTGGGCGATG TM1040_0414 425442 - 424111 - | FAD dependent oxidoreductase TM1040_0415 425629 - 426225 + | RNA polymerase sigma factor RpoE TM1040_0416 426222 - 426857 + | anti-ECFsigma factor, ChrR TERM 470 426875 - 426912 + T 72 -2.5 -4.8622 | gap 1, overlap 426877 CTTCAGGGCTCAGGT GGTGACGG-GAGCGAGGC GCT GCCTCGCGCTCCGGGATA TTTTTGGTTAGAAGA TERM 471 426877 - 426910 + T 71 -7.3 -4.05402 | gap 1, overlap 426875 TCAGGGCTCAGGTGG TGACGG-GAGCGAGGC GCT GCCTCGCGCTCCGGGA TATTTTTGGTTAGAA TERM 472 426946 - 426969 + T 100 -17.4 -3.89524 | opp_overlap 426946 CGATGACATGAAGAA GGGCCGCGGC ATTT GCTGCGGCCC TTTGTAACATGGCGT TERM 473 426969 - 426946 - T 95 -15.2 -3.78778 | opp_overlap 426946 CGATGACATGAAGAA GGGCCGCGGC ATTT GCTGCGGCCC TTTGTAACATGGCGT TM1040_0417 428015 - 427011 - | glyceraldehyde-3-phosphate dehydrogenase TM1040_0418 428354 - 430087 + | alpha amylase, catalytic region TM1040_0419 430269 - 430526 + | hypothetical protein TERM 474 430530 - 430571 + T 70 -9.9 -3.41222 | opp_overlap 430534, overlap 430529 430531 GACAACCGATGACGC AACAGGTGGGTGCGAGGGG CCAG CCCCTCGCGCTCCCCGGGA TATTTGGGGTTAGAA TERM 475 430531 - 430570 + T 75 -13.4 -2.64412 | opp_overlap 430534, overlap 430530 430529 ACAACCGATGACGCA ACAGGTGGGTGCGAGGGG CCAG CCCCTCGCGCTCCCCGGG ATATTTGGGGTTAGA TERM 476 430567 - 430534 - T 78 -13.7 -3.10975 | opp_overlap 430531 430530 430529 ACCGATGACGCAACA GGTGGGTGCGAGGGG CCAG CCCCTCGCGCTCCCC GGGATATTTGGGGTT TM1040_0420 431982 - 430753 - | glycosyltransferase involved in cell wall biogenesis TM1040_0421 432754 - 431975 - | mannosyl-3-phosphoglycerate phosphatase TERM 477 433592 - 433576 - g 71 -8.7 -3.79906 | opp_overlap 433576 433576 TCACTTCCAGAACAA CCCGGAT GTC ATCCAGG GTTTTGTCGAAGGGG TERM 478 433576 - 433593 + G 71 -6.3 -4.36914 | gap 1, opp_overlap 433576, overlap 433576 TCACTTCCAGAACAA CCC-GGAT GTC ATCCAGGG TTTTGTCGAAGGGGC TERM 479 434224 - 434234 + G 74 -5.4 -4.47328 | TGAGAGCTGGCAGGG TGGT TGG ACCA TTTTCTACTGGGCTT TM1040_0422 432884 - 434839 + | BCCT transporter TERM 480 434890 - 434856 - f 91 -15.9 -3.57144 | gap 2, opp_overlap 434861, overlap 434859 CCGGTCATGTCCAAA CGATTGCCCGCGCGACA TCC TG-CGCGCGGGCAAT-G ACATCCTGCGCGCGG TERM 481 434888 - 434859 - f 95 -18.7 -2.91695 | gap 1, opp_overlap 434861, overlap 434856 GTCATGTCCAAACGA TTGCCCGCGCGACA TCC TG-CGCGCGGGCAA TGACATCCTGCGCGC TERM 482 434861 - 434918 + F 72 -10.4 -3.53012 | gap 1, opp_overlap 434859 434856 434894 CATGTCCAAACGATT GCCCGCGCGACATCCTGCGCGCGGG CAATGACAT CCTGCGCGCGGGCAATC-CGGGGGC TTTGCGCGGCACAGG TM1040_0423 434944 - 435714 + | fumarylacetoacetate (FAA) hydrolase TM1040_0424 435852 - 437273 + | hypothetical protein TM1040_0425 437482 - 437877 + | hypothetical protein TERM 483 437885 - 437864 - T 74 -10.9 -3.65902 | gap 1 GCGATCTGACTGAAA CGC-CCACCT GCT AGGTGGCGCG CCCCAGCCCGGGGCG TM1040_0426 439386 - 437908 - | mannitol dehydrogenase-like TM1040_0427 440156 - 439386 - | sorbitol dehydrogenase TERM 484 439583 - 439572 - G 80 -3.6 -5.02476 | ATATTTTGCAAAAAA GGCA TCTA CGCC ATCCCAGTGCTCGCC TERM 485 440100 - 440137 + g 75 -2 -4.87291 | gap 3, opp_overlap 440085 440097, overlap 440101 GGCCTCGGCAAAGCT GCGCCC-GATGCCACGGGC TGC GCCGGTG--ATCAGGGCGG TTTTTCCTTCAAGTC TM1040_0428 441160 - 440156 - | ABC transporter related TERM 486 440861 - 440876 + g 70 -4.7 -4.56597 | overlap 440852 GATGCCTGCCATTTT CATCG GAAAGG CGATG TTTTTGCGCACCGAC TM1040_0429 442003 - 441173 - | binding-protein-dependent transport systems inner membrane component TERM 487 441630 - 441654 + g 85 -5.5 -5.06414 | opp_overlap 441637, overlap 441632 ATCAGATAGATCGGG TACAGCACGCC TAC GGCGGGCAGCA TTTTTGTTGAGAGCA TM1040_0430 442885 - 442019 - | binding-protein-dependent transport systems inner membrane component TERM 488 442975 - 442942 - R 83 -7.4 -4.68424 | gap 1, overlap 442943 442967 CAATTGAGTGAAAAA GGGCCAAGG-CTCGC GTGTT GCGAAACCCTGGCCA GGAGGAGTGAGGTTA TERM 489 442974 - 442943 - R 72 -10.9 -3.40331 | gap 1, overlap 442942 442967 AATTGAGTGAAAAAG GGCCAAGG-CTCGC GTGTT GCGAAACCCTGGCC AGGAGGAGTGAGGTT TM1040_0431 444295 - 442988 - | extracellular solute-binding protein TERM 490 444269 - 444281 + g 73 -9.1 -3.89822 | CGCAAGTGCAGAGGC CGCAC AAA GTGCG TTTCTCAGGTACATC TERM 491 444381 - 444368 - R 86 -3.9 -5.4505 | TTCGTCAATAAAAAA TTTAC GCGC GTAAA GAATAGTCATCGAAG TM1040_0432 445458 - 444427 - | LacI family transcription regulator TERM 492 445508 - 445534 + r 72 -10.2 -3.53012 | overlap 445495 AGGTTTCGCCGTGCG GTTTGAGGCGCA TTG TGCACCTTAAAC TTTGCGGGCGCAAAC TERM 493 445596 - 445629 + r 100 -26.9 -3.70068 | opp_overlap 445596 TGTTTTACATAAAAA CGCAAGGCCGCACCT TCGA AGGTGCGGCCTTGCG TTTGACCTTGTAGTG TERM 494 445629 - 445596 - R 100 -26.9 -4.96848 | opp_overlap 445596 TGTTTTACATAAAAA CGCAAGGCCGCACCT TCGA AGGTGCGGCCTTGCG TTTGACCTTGTAGTG TM1040_0433 447987 - 445657 - | methyl-accepting chemotaxis sensory transducer TERM 495 448037 - 448049 + r 71 -7.7 -4.1822 | overlap 448021 CGGCTGTTCGCGGTT GCTTG ACT CAAGC TTTGTTGCGGTGCCA TERM 496 448305 - 448319 + r 80 -11.4 -3.77722 | TGGTCAGGCGGTTGC CGCTGC AGA GCAGCG TTATTGGTGGTTGAG TM1040_0434 451171 - 448712 - | FAD dependent oxidoreductase TERM 497 448997 - 449012 + g 76 -6 -4.64861 | opp_overlap 448980, overlap 448981 449003 449004 CAGCATGCGCCGCTT GGGCGC GCCT GCGGCC TTTATTTTGGCGAGG TERM 498 451346 - 451296 - g 70 -3.1 -4.58283 | gap 1, opp_overlap 451307, overlap 451307 CAACTTGCCTAAAAA GCAGCCACGAACCGCAC-CGCCCG AAGC CCGGCGTGAGCAGTTGATCGATGC GACCATCACTGCAAT TM1040_0435 451273 - 451926 + | TetR family transcriptional regulator TM1040_0436 453096 - 452191 - | PaaX-like TERM 499 453087 - 453062 - G 100 -17.6 -3.50045 | ATGCAGATACGATAA GGGCTGGCGC GGGTTA GCGCCAGCCC AACTGCCATGACGTG TM1040_0437 455156 - 453126 - | bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase TERM 500 454759 - 454798 + g 90 -15 -3.60098 | CCGTGGCGCGACAGT TGCTCGACCGCGCCGTCT GTAT AGACCGTGCTGTCGGGCA TTTCGCGTCGCCCCT TERM 501 454842 - 454830 - G 71 -5.5 -4.35044 | GGAGGCAAAGACAAA CACCG TGC CGATG CCGCCGTCCACGTCG TM1040_0438 455317 - 456102 + | enoyl-CoA hydratase TM1040_0439 456106 - 456537 + | phenylacetic acid degradation protein PaaD TM1040_0440 456593 - 457903 + | phenylacetate-CoA ligase TERM 502 457976 - 457945 - g 74 -7.3 -4.32436 | opp_overlap 457946 457947, overlap 457933 457947 AGACCACGATCAAAA GCGCGCGCAGAT-CC TCGC GGCATCGGCGCGC-C TTTTTGCCGAGGAAG TERM 503 457946 - 457976 + G 76 -7.5 -4.56597 | gap 1, opp_overlap 457945 457933 457947, overlap 457947 GACCACGATCAAAAG CGCGCGCAGAT-CC TCGC GGCATCGGCGCGCC TTTTTGCCGAGGAAG TERM 504 457947 - 457975 + G 72 -11 -3.33744 | gap 1, opp_overlap 457945 457933 457947, overlap 457946 ACCACGATCAAAAGC GCGCGCAGAT-CC TCGC GGCATCGGCGCGC CTTTTTGCCGAGGAA TM1040_0441 457910 - 458506 + | TetR family transcriptional regulator TM1040_0442 458711 - 458974 + | 17 kDa surface antigen TERM 505 459084 - 459055 - T 100 -18.6 -3.90744 | opp_overlap 459051 459050 GCTTCGTGCAAAGAA GAGGGCCGCCCA ATCAAA CGGGCGGCCCTC GGCAGTTCTGGTCAT TM1040_0443 460147 - 459119 - | tryptophanyl-tRNA synthetase TERM 506 459763 - 459782 + g 78 -6.4 -4.68424 | overlap 459778 GATAGGCCAACAGAC CCAGCGAG GCGT TTTGCTGG TTTTTACCTGCCTTA TERM 507 460297 - 460314 + G 71 -9.1 -3.80841 | TCCTTTTAACGCCCT GCCGCCA GTGG TGGTGGC TTTGGTGATCGTGAT TM1040_0444 460262 - 460948 + | rhomboid-like protein TM1040_0445 462512 - 460965 - | integral membrane protein MviN TM1040_0446 465190 - 462509 - | PII uridylyl-transferase TERM 508 462804 - 462815 + g 88 -7.2 -4.90906 | opp_overlap 462803, overlap 462798 GTCGGCACACGGAAG GCGC GTTC GCGC TTTTTGATCTTGTCA TERM 509 463495 - 463479 - G 75 -7.9 -4.25283 | opp_overlap 463480, overlap 463480 ACCGCCTTAGCAAAA TCGCGCA CCG TGCGCGG GTCGGCAATGTCGCG TERM 510 465175 - 465151 - G 73 -10 -3.68302 | gap 1 GCAAGAGCGCAACAA CAGCGGCACGG AACT CCGCGCC-CTG ATGGTCCTGCGCCAA TERM 511 465263 - 465229 - R 71 -7.8 -4.18494 | gap 1, opp_overlap 465220, overlap 465230 CATCGGCATCGAAAA TCGCACTGGGGTCGC AGATGA GCGACCCCAGAG-GT TCAGGATGGGTTTTG TERM 512 465262 - 465230 - R 71 -11.3 -3.10775 | gap 1, opp_overlap 465220, overlap 465229 ATCGGCATCGAAAAT CGCACTGGGGTCGC AGATGA GCGACCCCAGAG-G TTCAGGATGGGTTTT TM1040_0447 466481 - 465297 - | extracellular ligand-binding receptor TERM 513 465757 - 465779 + g 77 -7.6 -4.30719 | GCGCCTGCGGTGGTC GCGGTCATGA ACA TCACGTCCGC TTTGTTCTGACGCAC TM1040_0448 466570 - 467433 + | hypothetical protein TERM 514 467664 - 467682 + G 71 -8.1 -4.07568 | gap 1, opp_overlap 467664 GCGGCACGCATCAAA CCCGC-GC AGAT GCAGCGGG TTTTCAACAGCGCGG TM1040_0449 467439 - 467813 + | hypothetical protein TERM 515 468616 - 468598 - g 100 -8.8 -5.00616 | GGCGGCCTGAAAAAA TCGGGCTC ACG GAGCGCGA TCTGGAGATCTGTGC TM1040_0450 467874 - 468809 + | glutathione synthetase TM1040_0451 468806 - 469702 + | Alpha/beta hydrolase fold-3 TM1040_0452 471201 - 469699 - | Mg chelatase-related protein TM1040_0453 471992 - 471312 - | hypothetical protein TM1040_0454 472632 - 472051 - | phosphoglycerate mutase TM1040_0455 473249 - 472629 - | adenosylcobinamide kinase TERM 516 472925 - 472939 + g 100 -12.8 -4.30014 | CATCCTGAGATTGAG CGGCGC CAA GCGCCG TTTTGGCTTCATAGG rpoH2 473334 - 474212 + | RNA polymerase factor sigma-32 TERM 517 474259 - 474282 + G 70 -3.1 -4.63218 | overlap 474263 TCGGCAATTTCATCT GGCAGCAGT TCTTGC ACTTTTGCC TTTTATTACAAACGC TERM 518 474607 - 474661 + G 78 -7.5 -4.59773 | GGCGCAGCATTGGGG CGCGGCGGTCCCGCGGTCGGTGGCG CGAGA CGCCGTTGCCAAGGGGGCGGTCGCG TTTTTCGGGGTAGAG TM1040_0457 474209 - 475072 + | hypothetical protein TERM 519 475980 - 475994 + G 76 -7 -4.57073 | overlap 475979 475990 TTCAGGCGGCGCTGC CCGCGG ATG CCGGGG TTTTTGCGGCGGCTG TERM 520 476078 - 476063 - g 71 -6.1 -4.3295 | opp_overlap 476073 CTCAAGAAAACCAAA GACGG CATGCC CCGTC TCGCGTTTGAGGAAA TM1040_0458 475190 - 476401 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TM1040_0459 476638 - 477012 + | hypothetical protein TERM 521 478299 - 478334 + G 71 -9.2 -3.79419 | gap 1, opp_overlap 478312, overlap 478298 GAATATCCGATCTCT GCGATCAATGACATTCC GCA GGAAT-TGGTTGATCGC TATTTTGTCGAGCGC TM1040_0460 477198 - 479711 + | MCP methyltransferase, CheR-type TM1040_0461 479863 - 480354 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 522 480733 - 480719 - g 71 -7.8 -4.07687 | overlap 480731 AGGCGCTGGGCAAAA GCGCCT GAA AGACGC CAGAGTTCTGGTGAT TM1040_0462 480351 - 481427 + | UBA/THIF-type NAD/FAD binding fold TERM 523 482085 - 482061 - g 75 -8.5 -4.18197 | ACGGTGCACTGAAAA TCGTTGGCGAG CCG CTCGGCACCGA GGACTTTGGCTTTAT TM1040_0463 481430 - 482221 + | extracellular solute-binding protein TERM 524 482250 - 482272 + F 93 -13.4 -3.96148 | opp_overlap 482247 TGAACTCCAATACCG CCCCGGCC AAACACA GGCCGGGG TTTGTCGTGACAGGG TERM 525 482534 - 482549 + G 84 -10.4 -4.18494 | GCGTTGGCTGGTGCT GCGGCA GGTC TGCCGC TTTTACGTCGAGGTG TM1040_0464 482295 - 483101 + | amino acid ABC transporter permease TERM 526 483742 - 483781 + G 78 -4.2 -4.77165 | ATGAGCGGGACTGGT TCATGGAGCTCTCCGAGG ACGA TCTTGAGGGGCTTCCTGA TTTTGTTGTGAAGGC TERM 527 484073 - 484063 - g 71 -8.2 -4.13014 | CCGAGATGGCCAAAA CGCC GGA GGCG GTGCGTGAGCTGTTG TM1040_0465 483198 - 485213 + | peptidyl-dipeptidase Dcp TERM 528 485231 - 485214 - T 78 -14.1 -2.52464 | opp_overlap 485201 485214 485215 CTGGCCGCCAAGTGA GCGCCCC TTCT GGGGCGC GGCCCCCGATGGGGA TERM 529 485214 - 485248 + T 75 -11.2 -3.53811 | opp_overlap 485214, overlap 485201 485215 CTGGCCGCCAAGTGA GCGCCCCTTCTGGGGC GCG GCCCCCGATGGGGAGA TTTGGGAAAGATGAA TERM 530 485215 - 485247 + T 78 -14.7 -2.72144 | opp_overlap 485214, overlap 485201 485214 TGGCCGCCAAGTGAG CGCCCCTTCTGGGGC GCG GCCCCCGATGGGGAG ATTTGGGAAAGATGA TERM 531 485295 - 485258 - T 77 -11.2 -3.56643 | opp_overlap 485267, overlap 485264 485267 GGGAGATTTGGGAAA GATGAAGAGGGGCGCC AAGTTG GGCGCCCTTCGTCGTC AATAGCCGCGGTTCC TERM 532 485289 - 485264 - T 78 -11.8 -3.45571 | opp_overlap 485267, overlap 485258 485267 TTTGGGAAAGATGAA GAGGGGCGCC AAGTTG GGCGCCCTTC GTCGTCAATAGCCGC TERM 533 485286 - 485267 - T 70 -12.1 -2.5742 | opp_overlap 485267, overlap 485264 485258 GGGAAAGATGAAGAG GGGCGCC AAGTTG GGCGCCC TTCGTCGTCAATAGC TERM 534 485267 - 485286 + T 77 -12.1 -3.22298 | opp_overlap 485267 485264 485258 GGGAAAGATGAAGAG GGGCGCC AAGTTG GGCGCCC TTCGTCGTCAATAGC TM1040_0466 486220 - 485294 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TM1040_0467 486627 - 486217 - | glyoxalase/bleomycin resistance protein/dioxygenase TM1040_0468 486728 - 487573 + | LysR family transcriptional regulator TM1040_0469 488709 - 487570 - | rod shape-determining protein RodA TERM 535 487863 - 487849 - G 78 -10 -3.86015 | TACGCCGCCCACAAA GCCGAA CTC TTCGGC AAGTGTGGTGAAGAT TERM 536 487970 - 487937 - G 82 -9.5 -4.37886 | gap 1, opp_overlap 487938 487966, overlap 487906 487938 GTACCCTGCATAAAA CCGCGCCCGGA-CCAG CCC CCGGACCCAAGCGCGA TCTTTGACTGCGTGA TM1040_0470 490652 - 488706 - | peptidoglycan glycosyltransferase TERM 537 489248 - 489225 - G 78 -13.8 -3.16881 | GATGGATTTCACCAA TCGGGGCGAG ATCT CGCGCCCCGA TGCAATCCGGGCGGT TM1040_0471 491188 - 490649 - | putative rod shape-determining protein MreD TM1040_0472 492128 - 491181 - | rod shape-determining protein MreC TERM 538 491249 - 491236 - G 77 -3.1 -5.00616 | gap 1, overlap 491237 GCGCGCTCCAAAAAA CCTTCG GGG CGA-GG CAGGGGGATCATATC TERM 539 492091 - 492065 - G 84 -8.7 -4.46404 | gap 1 GAACCAACACCAAAA GCCCG-ACAAGC AAAC GCTTGAGCGGGC CTGCATAGTCTTCGC TM1040_0473 493230 - 492184 - | rod shape-determining protein MreB TERM 540 492850 - 492864 + g 76 -7 -4.56775 | opp_overlap 492850 GGCGGCCAGAACCGA CGAGCG GAT CGCACG TTTTTCCACAGGCGT TM1040_0474 494182 - 493430 - | hypothetical protein TERM 541 494430 - 494403 - g 71 -7 -4.21402 | gap 1 ACCCAAAAGGACAAA CCGC-TGAGTTAC CTG GAAACCCATGCGG GACGTGCGCTCTATG TM1040_0475 494301 - 495080 + | hypothetical protein TERM 542 495132 - 495109 - T 85 -12.4 -3.92659 | opp_overlap 495109, overlap 495086 GTTTGAAAAGGGAAA CCGCCCGCAC GGGG ATGCGGACGG TTGGGTGTCAGGGGC TM1040_0476 496929 - 495160 - | methyl-accepting chemotaxis sensory transducer TERM 543 496879 - 496855 - G 76 -12.1 -3.32997 | overlap 496850 GGTGTAGAAAGTCAA GCTTGCGGCCG CGA CGAGCGCAAGC GCTACAAGGGCGTAG TERM 544 496954 - 496964 + r 70 -3.2 -4.82901 | GCCTTGCGTGTTTTC GGTT CGC GACC TTTTTCTGACAAAAA TERM 545 497085 - 497120 + r 86 -8.9 -4.71482 | opp_overlap 497092, overlap 497086 497091 497092 TTCCCCTCTGACCAT GCAAAAAGCGCCCGG ACTGTG CCGGGCGCCTTGTGA TTTTTGGACTTTGAT TERM 546 497086 - 497119 + r 78 -12.4 -3.41804 | opp_overlap 497092, overlap 497085 497091 497092 TCCCCTCTGACCATG CAAAAAGCGCCCGG ACTGTG CCGGGCGCCTTGTG ATTTTTGGACTTTGA TERM 547 497091 - 497114 + r 77 -10.9 -3.75505 | opp_overlap 497092, overlap 497086 497085 497092 TCTGACCATGCAAAA AGCGCCCGG ACTGTG CCGGGCGCC TTGTGATTTTTGGAC TERM 548 497092 - 497113 + r 79 -14.4 -2.8458 | opp_overlap 497092, overlap 497091 497086 497085 CTGACCATGCAAAAA GCGCCCGG ACTGTG CCGGGCGC CTTGTGATTTTTGGA TERM 549 497113 - 497092 - R 100 -14.4 -4.68593 | opp_overlap 497092 497091 497086 497085 CTGACCATGCAAAAA GCGCCCGG ACTGTG CCGGGCGC CTTGTGATTTTTGGA TM1040_0477 499365 - 497149 - | isocitrate dehydrogenase, NADP-dependent TERM 550 498835 - 498817 - G 82 -8.8 -4.36914 | CTCGTTGGCATAAAA GTCGTTGC CGG GCATCGAC GAGACTTTGGTCTTG TM1040_0478 499866 - 501158 + | glycosyl transferase, group 1 TM1040_0479 501775 - 501173 - | hypothetical protein TERM 551 501728 - 501691 - G 73 -8.9 -3.9398 | gap 1, opp_overlap 501688 501692, overlap 501682 501683 501692 TCACAAGTGCACAAA GCGC-CCCGCGCAGGGCG ACT CGCACAGAGCGGCTGCGC GGGCGTTCATTTTGT TERM 552 501692 - 501733 + g 71 -9.5 -3.82864 | gap 3, opp_overlap 501682 501683 501691 501692, overlap 501688 CACAAGTGCACAAAG CGCCCCGCGCAGGGCGACTC GCACA GAG-CGG-CTGCGCGGG-CG TTCATTTTGTTCAGT TM1040_0481 503246 - 502866 - | hypothetical protein TM1040_0480 501938 - 502924 + | glycolate reductase TM1040_0482 503457 - 504770 + | gamma-glutamyltransferase 1 TM1040_0483 505027 - 506433 + | FAD linked oxidase-like TERM 553 506484 - 506536 + F 74 -2.8 -4.8622 | gap 2, overlap 506486 CTTTCTATGGCCCAA TTTCT-GCCCCATCTTCTTGC-TAGC AGG GCTTTGTGAGAAGGTGGGGTAAGATG TTTTTCATTAGACGA TERM 554 506486 - 506534 + F 71 -7.6 -4.05402 | gap 2, overlap 506484 TTCTATGGCCCAATT TCT-GCCCCATCTTCTTGC-TAGC AGG GCTTTGTGAGAAGGTGGGGTAAGA TGTTTTTCATTAGAC TM1040_0484 506534 - 506977 + | hypothetical protein TM1040_0485 507420 - 506989 - | glutathione-dependent formaldehyde-activating, GFA TERM 555 507591 - 507605 + H 72 -3.5 -4.76171 | TTTTTGGCTGAAACT CTGAC GTGAA GTCGG TTTTGTCATTTTTTG TM1040_0486 507703 - 510210 + | FAD dependent oxidoreductase TERM 556 510263 - 510285 + F 100 -14.8 -4.30416 | opp_overlap 510263 TTTAAGGTCGCACAA GCGCTCCGGT TTT GCCGGGGCGC TTTTCCCTTGGTCCT TERM 557 510285 - 510263 - f 77 -11.9 -3.31322 | opp_overlap 510263 TTTAAGGTCGCACAA GCGCTCCGG TTTTG CCGGGGCGC TTTTCCCTTGGTCCT TM1040_0487 510374 - 511339 + | hypothetical protein TM1040_0488 511809 - 511342 - | calcium-binding EF-hand TM1040_0489 512568 - 511915 - | hypothetical protein TM1040_0490 513653 - 512568 - | FAD dependent oxidoreductase TM1040_0491 514654 - 513650 - | aldo/keto reductase TERM 558 515140 - 515120 - g 72 -2.6 -4.82901 | gap 1 GTGCTGGCAGAAAAA CGC-GAAAT GAAG ACTTCTGCG CGCGGGGTGAAAACG TM1040_0492 514715 - 515323 + | CDP-alcohol phosphatidyltransferase TERM 559 515542 - 515563 + T 81 -13 -3.59262 | opp_overlap 515542 GCCTCCGACAAAAAA GACCCGCC TGTGCT GGCGGGTC TTTCAAGGTCTCAGG TERM 560 515563 - 515542 - T 100 -13 -5.24129 | opp_overlap 515542 GCCTCCGACAAAAAA GACCCGCC TGTGCT GGCGGGTC TTTCAAGGTCTCAGG TM1040_0493 516668 - 515592 - | basic membrane lipoprotein TM1040_0494 517706 - 516786 - | inner-membrane translocator TM1040_0495 518788 - 517706 - | inner-membrane translocator TERM 561 518247 - 518270 + g 78 -6.6 -4.72272 | opp_overlap 518256 TGCAGGTTGCGCGAT CCCGGAAAGC CAAA GCCTTCGGGG TTTTTCATCAACCCC TERM 562 518626 - 518615 - G 85 -7.2 -4.77165 | CGGGCGATAATAAAA GGCG AACT CGCC AAACAGTGGCTCCCA TERM 563 518659 - 518669 + g 70 -4.6 -4.57073 | AGATCGTTCGGATTG CCTC GAC GGGG TTTTTGCCGAGGGTC TM1040_0496 520426 - 518906 - | ABC transporter related TM1040_0497 521358 - 520423 - | molybdenum cofactor sulfurylase TM1040_0498 523696 - 521348 - | xanthine dehydrogenase, molybdenum binding subunit apoprotein / xanthine oxidase TERM 564 521502 - 521486 - G 73 -9.4 -3.96892 | opp_overlap 521486 521485 AATGCCCAGCATAAA CGGTGG CTCGC CCACCG CTTTGGAGCGATAGA TERM 565 522527 - 522541 + g 79 -12.8 -3.53012 | GGAGGTCGCAGACCG GGGGGC AGA GCCCCC TTTGGACGCAAGGGG TERM 566 522978 - 522996 + g 95 -16 -3.90112 | ACGGCGCAGGCCACT GCCAGGGC ATT GCCCTGGC TTTCCTTGCCGCCAA TM1040_0499 525096 - 523693 - | molybdopterin dehydrogenase, FAD-binding TERM 567 525763 - 525775 + G 76 -9.1 -4.07885 | AAGCCGAAGTTTCCT GCACC GGT GGTGC TTTTGGCGCAGGATG dnaE 525502 - 529002 + | DNA polymerase III subunit alpha TM1040_0501 529831 - 529337 - | hypothetical protein TERM 568 529954 - 529943 - R 74 -7.2 -4.2679 | opp_overlap 529943 CAACCCCGATCAAAA CGGC CGGA GCCG TTAGTAATGGGGCGG TM1040_0502 530149 - 529955 - | SlyX protein, putative hisS 530303 - 531805 + | histidyl-tRNA synthetase hisZ 531808 - 532899 + | ATP phosphoribosyltransferase regulatory subunit hisG 532896 - 533588 + | ATP phosphoribosyltransferase catalytic subunit TERM 569 533586 - 533624 + T 73 -8 -4.05446 | opp_overlap 533590, overlap 533589 ACAAAGATTGAAGGC TAAACTGGGATGCGAGGC TCT GCCTCGCGCTCCGGGATA TTTCTCGTTAGAAGA TERM 570 533635 - 533674 + T 95 -18.8 -3.33162 | gap 1, opp_overlap 533641, overlap 533638 533641 533645 GGATATTTCTCGTTA GAAG-AAGGAAGGCTGCGG GAT CCGCGGCCTTTCTTGCTTC TTCTGACCTCAAATA TERM 571 533638 - 533671 + T 91 -14.7 -3.80733 | gap 1, opp_overlap 533641, overlap 533635 533641 533645 TATTTCTCGTTAGAA G-AAGGAAGGCTGCGG GAT CCGCGGCCTTTCTTGC TTCTTCTGACCTCAA TERM 572 533641 - 533667 + T 95 -16.6 -3.58208 | opp_overlap 533641, overlap 533638 533635 533645 TTCTCGTTAGAAGAA GGAAGGCTGCGG GAT CCGCGGCCTTTC TTGCTTCTTCTGACC TERM 573 533667 - 533641 - T 83 -12.2 -3.78934 | opp_overlap 533638 533635 533641 533645 TTCTCGTTAGAAGAA GGAAGGCTGCGG GAT CCGCGGCCTTTC TTGCTTCTTCTGACC TERM 574 533645 - 533663 + T 95 -13.8 -4.4078 | opp_overlap 533641, overlap 533641 533638 533635 CGTTAGAAGAAGGAA GGCTGCGG GAT CCGCGGCC TTTCTTGCTTCTTCT TM1040_0506 534213 - 533746 - | hypothetical protein TM1040_0507 534696 - 534367 - | hypothetical protein TM1040_0508 534809 - 535510 + | hypothetical protein TM1040_0509 535543 - 536205 + | GntR family transcriptional regulator TERM 575 536518 - 536531 + G 70 -3.1 -4.60041 | GGATCTGGTGCGTGA CCTTG CTCT TAAGG TTTTTGAAACTGGGT TM1040_0510 536336 - 537115 + | Serine O-acetyltransferase TM1040_0511 537112 - 538005 + | hypothetical protein TM1040_0512 538014 - 539153 + | peptidase M20D, amidohydrolase TERM 576 539514 - 539524 + G 74 -6.8 -4.30719 | overlap 539503 TGACGCGCGCGCATC CCGA GCT TCGG TTTATTGTCGACCAC TM1040_0513 539153 - 540061 + | LysR family transcriptional regulator TERM 577 540092 - 540070 - f 70 -10.6 -3.33492 | opp_overlap 540063 540070 CGACTGACCGCACAA TGCGTTGCTA TGA TGGCAACGCA TTGTGCGCAAACGAC TERM 578 540070 - 540092 + F 78 -12.8 -3.28712 | opp_overlap 540070, overlap 540063 CGACTGACCGCACAA TGCGTTGCTA TGA TGGCAACGCA TTGTGCGCAAACGAC TERM 579 540227 - 540206 - g 70 -5.1 -4.46254 | gap 1, overlap 540208 GCAACACAGAACAAA CG-GGCCG GGGTGAT CGGCCTCG GTGCAATGGGATTGG TM1040_0514 540185 - 541099 + | 6-phosphogluconate dehydrogenase, NAD-binding TERM 580 541138 - 541109 - g 74 -3.5 -4.80453 | gap 1, opp_overlap 541122, overlap 541110 541121 GCATGACAAAAGAAA TGATCGACATCACG GGC CGTG-TGGCGACCC TGTTGCGCGACCTCA TERM 581 541806 - 541821 + G 71 -6.8 -4.20516 | overlap 541800 541802 GATCGCGCACCCGGA GACCGC GCTT GTGGTC TTTGTTGGGTCGGCA TERM 582 542627 - 542598 - g 71 -6.9 -4.21827 | CGAAACAGCTGAAAA CCCGGCCCAAGGC TTTG GCTACGCGCCGGG CTGACGCCAAAGCTC TM1040_0515 541096 - 542631 + | aldehyde dehydrogenase TM1040_0516 542752 - 543573 + | hypothetical protein TM1040_0517 543576 - 544052 + | hypothetical protein TERM 583 544061 - 544107 + T 83 -14.5 -3.27022 | gap 1, overlap 544063 CCTCTGATCTCGTGC TCTCGCCCTTGTCTTGCCGGGT GCAA ATCGGGCGGGGCAAGGGCG-GA TTGCTCTAGGGTGGC TERM 584 544063 - 544106 + T 81 -16 -2.55999 | overlap 544061 TCTGATCTCGTGCTC TCGCCCTTGTCTTGCCGGGT GCAA ATCGGGCGGGGCAAGGGCGG ATTGCTCTAGGGTGG TERM 585 544185 - 544146 - T 95 -19.4 -2.85999 | gap 1, opp_overlap 544146 544153, overlap 544153 CCACCGCACAGGAGA CAAAAAAGCCGCCAGCGGG AAC CCCGC-GGCGGCTTTCGTG TTTTGAGGACCAGTC TERM 586 544146 - 544185 + T 100 -17.2 -4.07885 | gap 1, opp_overlap 544146 544153, overlap 544153 CCACCGCACAGGAGA CAAAAAAGCCGCCAGCGGG AAC CCCGC-GGCGGCTTTCGTG TTTTGAGGACCAGTC TERM 587 544153 - 544178 + T 100 -18.3 -4.07678 | gap 1, opp_overlap 544146 544153, overlap 544146 ACAGGAGACAAAAAA GCCGCCAGCGGG AAC CCCGC-GGCGGC TTTCGTGTTTTGAGG TERM 588 544178 - 544153 - T 100 -18.3 -5.40625 | gap 1, opp_overlap 544153 544146, overlap 544146 ACAGGAGACAAAAAA GCCGCCAGCGGG AAC CCCGC-GGCGGC TTTCGTGTTTTGAGG nrdF 545219 - 544203 - | ribonucleotide-diphosphate reductase subunit beta TERM 589 545202 - 545214 + g 70 -10.5 -3.53779 | GATCTCAGCAGCTTG GGGGC AAG GCCCC TTCATCTTTTCCAAA TM1040_0519 547413 - 545281 - | ribonucleoside-diphosphate reductase class Ib alpha subunit TERM 590 546438 - 546452 + g 70 -10 -3.53091 | CCATCTCGTGATATT TCTCGG TGA CCGAGA TTTCCGAGAAGGCCT TERM 591 546496 - 546517 + g 83 -4.4 -5.06414 | TTCCACGTCATGCGG CGAGAACA GATACA TGTCCTCG TTTTTCTTGGCGAGC TM1040_0520 547817 - 547395 - | nrdI protein TM1040_0521 548060 - 547839 - | ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit TM1040_0522 548973 - 548599 - | glutathione-dependent formaldehyde-activating, GFA TM1040_0523 550034 - 549000 - | bile acid:sodium symporter TM1040_0524 551305 - 550031 - | major facilitator transporter TM1040_0525 552300 - 551302 - | glyceraldehyde-3-phosphate dehydrogenase TM1040_0526 553172 - 552342 - | ArsR family transcriptional regulator TM1040_0527 553735 - 554442 + | peptidase S1 and S6, chymotrypsin/Hap TERM 592 554516 - 554555 + T 79 -12.2 -3.56643 | gap 1, opp_overlap 554524, overlap 554522 AGCATCCAGAGTTAT CGACAGGATCCGG-TGCCA GAA TGGCAACCGGACATTGTCG TTTCCCACCTATGGC TERM 593 554547 - 554524 - T 70 -11.8 -2.64933 | gap 1, opp_overlap 554522 554516 GAGTTATCGACAGGA TCCGG-TGCCA GAA TGGCAACCGGA CATTGTCGTTTCCCA TM1040_0528 555736 - 554564 - | Type I secretion membrane fusion protein, HlyD TM1040_0529 558348 - 555733 - | ABC transporter related TERM 594 557984 - 558001 + g 79 -9.1 -4.15044 | gap 1 GCCAGTGGCTCTGTT GCCGG-CG CGG CGTCCGGC TTTGTTGCGGCAGGG TM1040_0530 559640 - 558345 - | outer membrane efflux protein TERM 595 559281 - 559265 - G 71 -6.5 -4.17048 | CGTTGTCGAAAAGAA CCTGCTC GAG GAGCATG CTGGCCACCATCTCG TERM 596 559666 - 559684 + r 72 -9.5 -3.67597 | CGTGCCTCAAACTGT CCCGCGG TTTGT CCGTGGG TTATTGCGTGCGCGC TM1040_0531 562301 - 559749 - | hypothetical protein TM1040_0532 563004 - 564938 + | putative serine protein kinase, PrkA TERM 597 565036 - 564993 - g 71 -5.8 -4.35524 | overlap 564998 565000 CGCGCAAATCCAAAA GGCAAGAGTTTGGGGAACCG GCAA CGGTTCCTCAGACGCGCGCG CGAAAATATCAAGGA TM1040_0533 564957 - 565316 + | hypothetical protein TM1040_0534 565370 - 566272 + | hypothetical protein TM1040_0535 566278 - 567795 + | hypothetical protein TERM 598 567816 - 567845 + T 100 -12.2 -5.36441 | opp_overlap 567821, overlap 567821 GCGAACCTCAGAGCA AAAAAGGCGGCC CAAGGA GGCCGCCTTTTG TTTTTTGTATCAGGG TERM 599 567840 - 567821 - T 100 -12.8 -5.21709 | opp_overlap 567816 567821 CCTCAGAGCAAAAAA GGCGGCCC AAGG AGGCCGCC TTTTGTTTTTTGTAT TERM 600 567821 - 567840 + T 100 -12.1 -5.51612 | opp_overlap 567821, overlap 567816 CCTCAGAGCAAAAAA GGCGGCC CAAGGA GGCCGCC TTTTGTTTTTTGTAT TM1040_0536 568981 - 567866 - | alcohol dehydrogenase GroES-like protein TM1040_0537 569385 - 569786 + | MerR family transcriptional regulator TERM 601 570123 - 570147 + F 74 -12.1 -3.05844 | overlap 570125 GCGGTAATTTTACGC CAGCGCGAGTC AAG GACCTGCGCTG TCTTGCCGTGCAACG TERM 602 570458 - 570469 + F 93 -2.2 -5.72622 | CGGATCTGTGCTTTT TTGC CGCG GCGA TTTTTTGTTTGTCGC TM1040_0538 570587 - 571387 + | SARP family transcriptional regulator TM1040_0539 571387 - 572250 + | hypothetical protein TERM 603 572279 - 572321 + T 83 -11.3 -3.9122 | gap 1 CCGCGGCGCCCCTCT CGATTGCCCTCTCCATCGCT CCCG AGCATTGGAGGGGGCAG-CG TTGTTTCAAACAGTC TM1040_0540 573619 - 573038 - | phosphoglycerate mutase TERM 604 573532 - 573551 + g 88 -13.6 -3.63068 | overlap 573527 573520 CGACATCGAGCCGCC CCGCGATG ATTT CATCGCGG TTTGCGGTCGTCTCA TM1040_0541 574689 - 573619 - | beta-lactamase-like TM1040_0542 575739 - 574699 - | ABC transporter related TM1040_0543 577433 - 575727 - | binding-protein-dependent transport systems inner membrane component TERM 605 577411 - 577376 - G 75 -13.2 -2.87243 | overlap 577373 CCAGCACCAGAATGA GCGACAGCAGCCGGCC CTCG GACCGGCTGCTGCTGG AATATGCGGCGAGCG TM1040_0544 578398 - 577430 - | extracellular solute-binding protein TERM 606 579032 - 579047 + G 89 -6.8 -5.02074 | gap 1 TCTGGATTTTGTCGG CGCTGCG AGT CGC-GCG TTTTTTGCCGACTAC TM1040_0545 578562 - 579359 + | DeoR family transcriptional regulator TM1040_0546 579549 - 580178 + | hypothetical protein TM1040_0547 582749 - 580200 - | twin-arginine translocation pathway signal TM1040_0548 585754 - 582746 - | glycosyl transferase family protein TERM 607 587370 - 587348 - g 72 -12 -3.27525 | overlap 587343 TGCGCTCAAATCCAA CCACACGCCC AAT GGGCATGTGA CGATGGTGGGCGCGC TM1040_0549 586629 - 587639 + | hypothetical protein TM1040_0550 588155 - 587652 - | MarR family transcriptional regulator TERM 608 588083 - 588121 + g 85 -13.1 -3.79668 | opp_overlap 588083 GATTGCGCGAGTAAA GCTCGGTCGCGCGCAGA ATACG TCTGAGCGCGATCAGGC TTTCATCGGTTCGGT TERM 609 588121 - 588083 - G 80 -10.9 -3.72893 | opp_overlap 588083 GATTGCGCGAGTAAA GCTCGGTCGCGCGCAGA ATACG TCTGAGCGCGATCAGGC TTTCATCGGTTCGGT TM1040_0551 588383 - 588934 + | L-2,4-diaminobutyric acid acetyltransferase TM1040_0552 588982 - 590268 + | diaminobutyrate--2-oxoglutarate aminotransferase TERM 610 590265 - 590255 - f 76 -5.4 -4.77757 | opp_overlap 590255 CTGCAAAAACCAAAA TTGC CGC GCAA TAATCTGAAGACCGG ectC 590293 - 590685 + | L-ectoine synthase TERM 611 590758 - 590733 - g 80 -3.1 -5.02476 | opp_overlap 590754, overlap 590734 590735 ATACTGTTGAAAAAA TTGGCGGGACA TCCA TGTCCCGCGTG AACGAGCTGGTCGGC TERM 612 591196 - 591207 + G 71 -5.8 -4.39426 | overlap 591152 GTTGCAGCGCGCGGG CGTG AATG CACG TTTTGTGGACCTCTC TM1040_0554 590711 - 592147 + | aspartate kinase TERM 613 592213 - 592194 - T 79 -10.6 -4.0274 | opp_overlap 592194 TGCATCACCAAAGAA GGGGCGCC TGCG GGTGCCCC TTTGTGCGTTGCGGC TERM 614 592194 - 592213 + T 89 -12.8 -3.97368 | opp_overlap 592194 TGCATCACCAAAGAA GGGGCGCC TGCG GGTGCCCC TTTGTGCGTTGCGGC TM1040_0555 593632 - 592559 - | 3-carboxy-cis,cis-muconate cycloisomerase TM1040_0556 594505 - 593672 - | hypothetical protein TM1040_0557 595132 - 594515 - | protocatechuate 3,4-dioxygenase, alpha subunit TM1040_0558 595857 - 595135 - | protocatechuate 3,4-dioxygenase, beta subunit TM1040_0559 596258 - 595854 - | 4-carboxymuconolactone decarboxylase TM1040_0560 597039 - 596251 - | 3-oxoadipate enol-lactonase TM1040_0561 598208 - 597039 - | 4-hydroxybenzoate 3-monooxygenase TERM 615 597068 - 597090 + g 72 -12 -3.28712 | opp_overlap 597074, overlap 597071 CGACATAGTTGGTGG CAAGCACGCG TTG CGCGTCCTTG TTGTCGCGCAGGAAC TERM 616 597882 - 597852 - G 80 -3.9 -5.0538 | gap 1, overlap 597853 TTCGACGTCAAAAAA CGTGGTCGCGCCAA CGCT TTCGCGCG-CCTCA TAGAGATCGCGGGTC TM1040_0562 598290 - 599228 + | LysR family transcriptional regulator TERM 617 599883 - 599866 - g 70 -3.3 -4.59773 | TTCGATCCGGAAAAA GGCTTCC GTCT GGCAACC TATGCGATGTGGTGG TM1040_0563 599575 - 600474 + | RNA polymerase factor sigma-32 TERM 618 600533 - 600556 + T 100 -13.1 -5.72622 | GCGCGGACATTCGAA GGGGTCGCC CATCTC GGCGGCCCC TTTTTTGTTTGTGCG TM1040_0564 602131 - 600959 - | peptidase M19, renal dipeptidase TERM 619 602090 - 602069 - G 93 -5.9 -5.48063 | overlap 602077 AGCGAAGATAAAAAA CGCCATA ATCGCACA TATGGCG AGACCCACGAGGCGT TERM 620 602609 - 602592 - g 74 -6.2 -4.56597 | opp_overlap 602580 GTGCTGGTCGAAAAA CCCGCG ACGCTA CGCGAG GAGGAGTTCGACCAG TERM 621 602946 - 602960 + G 76 -7 -4.55295 | CTCTCTAATGTGCAG GCGCGG TTC CCGAGC TTTCTTTATACGGCC TM1040_0565 602298 - 603287 + | oxidoreductase-like TM1040_0566 603420 - 603689 + | hypothetical protein TM1040_0567 604196 - 603693 - | GCN5-related N-acetyltransferase TM1040_0568 605432 - 604197 - | hemolysin-type calcium-binding region TERM 622 605458 - 605477 + r 84 -13.6 -3.66178 | opp_overlap 605458 TTCCTGATGTAAAAA TGGCTCCC AAAT GGGAGCCA TTTCAAATTACCGAG TERM 623 605477 - 605458 - R 95 -13.6 -4.65895 | opp_overlap 605458 TTCCTGATGTAAAAA TGGCTCCC AAAT GGGAGCCA TTTCAAATTACCGAG TM1040_0569 607328 - 605508 - | peptidase M3B, oligoendopeptidase-related clade 3 TERM 624 606066 - 606042 - G 70 -9.9 -3.54741 | GAGCATCTCGCCAAA GACCGATGCGG TTT CCGCAAGGGTC AGGGGTGTCGAAGAG TERM 625 606294 - 606279 - G 74 -5.4 -4.56597 | gap 1, overlap 606281 GCCCTTGTCGAAAAA CG-GCTG CGC CAGCTCG CCCATGCGTGGATCA TERM 626 606324 - 606312 - G 71 -9.1 -3.72893 | CATGCGTGGATCAAA GGCCT CAT AGGCC TCCATCACGGTTGCG TM1040_0570 608468 - 607521 - | alpha/beta hydrolase fold TM1040_0571 608803 - 608489 - | sterol-binding TM1040_0572 608877 - 609461 + | tetratricopeptide TPR_2 TERM 627 611101 - 611087 - g 74 -7 -4.4009 | overlap 611089 TCTCACCGGACAAAA CCGCGC AAG GCGCTG AAGCAAAGGCACTGA TERM 628 611273 - 611287 + G 75 -2.7 -4.87665 | GTGCCGATGCGCTGT CCCCG CAGAT CGAGG TTTTTGTCGATGAGA TERM 629 611428 - 611403 - g 71 -7.6 -4.07885 | gap 1, opp_overlap 611413 611418 TATCGCCCTGCAAAA GGACGAAGCCC TCACC GGGCTT-GCCC GTGGGTTTGCGTTCC TERM 630 612380 - 612369 - g 76 -7.2 -4.56597 | overlap 612370 612371 GCCCGGTGGTAAAAA GGGC GGCC GCCC GGATCGCGGCGGCGA TM1040_0573 609547 - 612501 + | helicase-like TERM 631 612652 - 612668 + G 84 -10.1 -4.24002 | opp_overlap 612652, overlap 612645 AAAGCCCTCTCAGAA CGTCTCC ATT GGGGACG TTTTGACCTTTCCGC TERM 632 612853 - 612839 - g 71 -5.6 -4.30719 | opp_overlap 612841, overlap 612841 CGCCCGGATAAGAAA GAGCGC AGG GCGCTT GGTCTTACTCGCGTC TM1040_0574 612509 - 612883 + | RNA-binding S4 TERM 633 613218 - 613203 - g 84 -10.4 -4.15222 | ATCGTCTCCAAGAAA GACCCG ATGC CGGGTC ATGAGGAGCGCGATG TERM 634 613281 - 613259 - g 70 -10.6 -3.5362 | opp_overlap 613258, overlap 613257 CAAGCTCGAGAAATA CTTCTCCGAA GCA CCCGGAGAAG GTGGTTAAGACGCCG TM1040_0575 612951 - 613289 + | 4Fe-4S ferredoxin, iron-sulfur binding TERM 635 613345 - 613371 + F 100 -13.7 -4.97666 | overlap 613324 613343 613367 GTGACGTCAGATTGA CGTGCGCTCCG TCTTT CGGAGGGCACG TTTTTGTGCTATATT TERM 636 613746 - 613713 - g 80 -10.3 -4.07746 | opp_overlap 613723 CTTTGAAAAAGACAA GATGACCCTGCGCGT GCCG ACGCATAAGGCCATC GACATCGGCATGCGT TM1040_0576 613567 - 614076 + | CarD family transcriptional regulator TERM 637 614119 - 614100 - T 100 -16.4 -3.93038 | opp_overlap 614100 614116 GATCCCAATATCAAA GGCCGCCC GATT GGGCGGCC TTTTTTGATGCGAGA TERM 638 614100 - 614119 + T 100 -16.4 -5.14563 | opp_overlap 614100, overlap 614116 GATCCCAATATCAAA GGCCGCCC GATT GGGCGGCC TTTTTTGATGCGAGA TM1040_0577 614895 - 614143 - | cobalamin-5'-phosphate synthase TERM 639 614195 - 614228 + g 75 -2.9 -4.98255 | overlap 614196 614197 TCGCTGAGTTGCTGC GTGGCGCCCAGAACG TCTC CGGTCTGCCCGCCGA TTTTTGTCATTGCAA TM1040_0578 614997 - 616007 + | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase TM1040_0579 617911 - 616034 - | potassium efflux system protein TERM 640 616628 - 616614 - G 71 -7 -4.2717 | ACGATCTGACCAAAA CGCCCG ATC CCGGCG ATGATCACTGTGCCT TERM 641 617992 - 618017 + r 74 -10.3 -3.66139 | opp_overlap 617993, overlap 617993 618013 GATCAGGTTAAAAAA AGCGGCAGCTC GAGA GAGCCGCCGCA TTTGCGGTATCTGTG TERM 642 618016 - 617993 - R 100 -16 -5.44721 | opp_overlap 617993 617992 618013 ATCAGGTTAAAAAAA GCGGCAGCTC GAGA GAGCCGCCGC ATTTGCGGTATCTGT TERM 643 617993 - 618016 + r 76 -13.8 -2.79202 | opp_overlap 617993, overlap 617992 618013 ATCAGGTTAAAAAAA GCGGCAGCTC GAGA GAGCCGCCGC ATTTGCGGTATCTGT TM1040_0580 619292 - 618069 - | hypothetical protein TM1040_0581 619811 - 619356 - | AsnC family transcriptional regulator TERM 644 620421 - 620434 + G 83 -4.5 -5.10461 | gap 1, opp_overlap 620421 CTGAAGCAGTCCAAA CCG-CG CGG CGTCGG TTTTTATTACCTCGA TERM 645 620918 - 620930 + G 71 -7.7 -4.02051 | opp_overlap 620915 CTTCTCAAAAACGGT GATCG GGC CGATC TTCTTTGAGTTCATC TM1040_0582 619950 - 621050 + | 4-hydroxyphenylpyruvate dioxygenase TERM 646 621059 - 621087 + T 85 -15.9 -3.05384 | opp_overlap 621056 CGAGTGATGAGATCT GAGGCGGTGTCGC ATG GCGGCGCCGCCCC TTGAATACAAAAGAG TERM 647 621130 - 621100 - T 100 -14 -4.66537 | opp_overlap 621106, overlap 621106 CCCTTGAATACAAAA GAGAAAGCCGGGCA ATT TGCCCGGCTTTTGC GTTCACTTCAGGAAC TERM 648 621124 - 621106 - T 100 -16 -4.55004 | opp_overlap 621106, overlap 621100 AATACAAAAGAGAAA GCCGGGCA ATT TGCCCGGC TTTTGCGTTCACTTC TERM 649 621106 - 621124 + T 100 -16 -4.29845 | opp_overlap 621106 621100 AATACAAAAGAGAAA GCCGGGCA ATT TGCCCGGC TTTTGCGTTCACTTC TM1040_0583 623808 - 621175 - | hypothetical protein TERM 650 621440 - 621467 + g 71 -9.2 -3.72695 | gap 1 ATGGCCGGTGTCACC GCTGCAGACGCAA CGG TTGCG-CTGGAGC TTTGATCGGGCGCCT TERM 651 622836 - 622862 + g 78 -7.1 -4.63527 | overlap 622845 622846 TCGGGGCGGCAGGTA CCGACGAGGTC GCAAG GGCCACGCCGG TTTTTGCGGTCGTGG TERM 652 623914 - 623934 + H 73 -12.5 -2.64354 | opp_overlap 623910, overlap 623913 ACCCTAAAGCACCGA GGCCTCCCG CGC CGGGACGCC GTTATCACTGTGTAA TM1040_0584 624063 - 624779 + | hypothetical protein TERM 653 624805 - 624840 + T 100 -14 -4.44245 | opp_overlap 624813, overlap 624807 624813 AGGGCTGTTGATTTA TGGAAAAAGGCCGGGG AATG CCCCGGCCTTTTGCAG TTTTCTAAGTCGTGT TERM 654 624807 - 624838 + T 91 -18.8 -2.55012 | opp_overlap 624813, overlap 624805 624813 GGCTGTTGATTTATG GAAAAAGGCCGGGG AATG CCCCGGCCTTTTGC AGTTTTCTAAGTCGT TERM 655 624813 - 624832 + T 100 -16.4 -4.29656 | opp_overlap 624813, overlap 624807 624805 TGATTTATGGAAAAA GGCCGGGG AATG CCCCGGCC TTTTGCAGTTTTCTA TERM 656 624832 - 624813 - T 100 -16.4 -4.67353 | opp_overlap 624813 624807 624805 TGATTTATGGAAAAA GGCCGGGG AATG CCCCGGCC TTTTGCAGTTTTCTA TM1040_0585 626165 - 624873 - | O-acetylhomoserine/O-acetylserine sulfhydrylase TM1040_0586 627305 - 626316 - | hypothetical protein TERM 657 626544 - 626560 + g 71 -6.5 -4.26903 | ATAAAGGAGCGGGAA GCTGCGA TAG TGGCAGC TTTTGCTGCCATCCA TM1040_0587 628279 - 627404 - | hypothetical protein TM1040_0588 628832 - 628389 - | MaoC-like dehydratase TERM 658 629012 - 628981 - R 100 -15.2 -4.34402 | TGGGCGACAGCAAAA GACCCGCCTTCACC TTGC GGCAAAGACGGGTC AGATACTCCAAAAGT TM1040_0589 629910 - 629035 - | HAD family hydrolase TERM 659 629482 - 629514 + g 72 -11.3 -3.33696 | CGGGTCGGCCAAGGT GTCGAAGGGACCG CAGCAGA CGATCCCTTCGGC TTCCTTAAGCGGGAC TERM 660 630039 - 630013 - R 100 -17.3 -5.2189 | opp_overlap 630013 CCAAGCATGAAAAAA GCCAGCGCCCG GATCA CAGGCGCTGGC TTTTTATCTGGAACC TERM 661 630013 - 630039 + r 100 -15.1 -4.96848 | opp_overlap 630013 CCAAGCATGAAAAAA GCCAGCGCCCG GATCA CAGGCGCTGGC TTTTTATCTGGAACC TM1040_0590 632194 - 630062 - | DEAD/DEAH box helicase-like TERM 662 630258 - 630280 + g 72 -13.4 -2.57132 | overlap 630255 630256 630257 630273 CTGTGTGGCTTATCC CCCCGGGG CTTATCC CCCCGGGG CTTGTCGCCCCAGGG TERM 663 630273 - 630295 + g 82 -11.9 -3.91144 | overlap 630258 630257 CCCCGGGGCTTATCC CCCCGGGGC TTGTC GCCCCAGGG TTTGTCCCCTCTCGG TERM 664 630301 - 630325 + g 73 -9.2 -3.89614 | CGCCCCAGGGTTTGT CCCCTCTCGG CTTGT CTGAGCGGGG TTTATCAAACTTGCC TM1040_0591 632483 - 633289 + | peptidase M48, Ste24p TERM 665 633360 - 633339 - T 95 -12.3 -4.54727 | gap 1, opp_overlap 633339 GCGCCGAAATGAAAA GGCCCGCCTG AAG CAG-CGGGCC TTTCTTTGCTTTTGG TERM 666 633339 - 633360 + T 95 -12.3 -4.67692 | gap 1, opp_overlap 633339 GCGCCGAAATGAAAA GGCCCGCCTG AAG CAG-CGGGCC TTTCTTTGCTTTTGG TM1040_0592 634328 - 633408 - | putative manganese-dependent inorganic pyrophosphatase TM1040_0593 635525 - 634464 - | GumN TM1040_0594 636592 - 635522 - | GumN TM1040_0595 636662 - 637360 + | hypothetical protein groES 637635 - 637922 + | co-chaperonin GroES TERM 667 638543 - 638526 - g 84 -6.3 -4.87892 | gap 1, opp_overlap 638525 638522 GTTGAAGAAAACAAA GGTCT-GG AAA CCGAGACC GATGTTGTCGAAGGC groEL 637983 - 639626 + | chaperonin GroEL TERM 668 639670 - 639689 + F 100 -12.8 -5.1675 | opp_overlap 639670 CCTTCGGGGTCGAAA GGGTCGCC TTCG GGCGGCCC TTTTTTGCTGCCTGA TERM 669 639689 - 639670 - f 72 -10.6 -3.53012 | opp_overlap 639670 CCTTCGGGGTCGAAA GGGTCGCC TTCG GGCGGCCC TTTTTTGCTGCCTGA TM1040_0598 639694 - 639996 + | hypothetical protein TERM 670 640089 - 640131 + F 95 -3.3 -5.75342 | gap 1, overlap 640090 640092 GGCTGCGGTTGGTCA TGTGTCTTACATGGCCCGCA CATG TGCTGGCCAAG-GGGACTCG TTTTTTTTCCGCGGG TM1040_0599 640194 - 640463 + | hypothetical protein TERM 671 640469 - 640510 + F 100 -20.3 -2.86164 | opp_overlap 640490 640491 GCTCTATTGACCGCA TCTTGCCCCGGAGCCGA CAAACGCC TCCGCTCCGGGGCAAGA TCTCATAATTGGGGC TM1040_0600 640633 - 641526 + | hypothetical protein TM1040_0601 641536 - 642342 + | lipase, putative TERM 672 642899 - 642876 - g 76 -5.9 -4.62069 | gap 1, overlap 642877 CGCGCAGGGGAAAAA GCC-GCCGCG GTTGA CGGGGCAGGC GCTCAAGGCTGGGCG TERM 673 643325 - 643298 - g 71 -8.4 -4.08216 | gap 1, opp_overlap 643287 TTATGCTGGCCAAAA CCGGCCTGCTGCC TTT GG-AACAGGCCTG GGCGCTGGTCTCATC TM1040_0602 642346 - 643503 + | amidohydrolase 3 TM1040_0603 644801 - 643704 - | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 674 644487 - 644516 + g 77 -11.3 -3.62096 | GCGGTCCTGCGACAC CCGAAGCGCCTCG CGAC CGGGGCGGATCGG TTTCAGATCCTCGAG TM1040_0604 645282 - 644794 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 675 645967 - 645993 + G 73 -5.1 -4.67608 | gap 1, opp_overlap 645957, overlap 645969 GCAATCCTCGGTCAG CCGCAG-CTCGT GTCT ACGGGGCTGCCG TTTTGTATTACCGTG TERM 676 646116 - 646152 + G 80 -10.8 -4.10161 | AATGGAGCCTTTCCT CGTGACGCTTGATGGG TTCAC CCCAACAGGCGATACG TTTTCGCGACTGCTC TERM 677 646353 - 646370 + G 89 -6.9 -5.13722 | overlap 646354 AGCCCCGAAGGGCAT TCGCGTC GGGG GGCGCGG TTTTGTTTTGATGCG TM1040_0605 645532 - 646422 + | phenazine biosynthesis PhzC/PhzF protein TM1040_0606 646512 - 646958 + | glutathione-dependent formaldehyde-activating, GFA TM1040_0607 647470 - 646940 - | hypothetical protein TERM 678 647081 - 647059 - G 71 -8.4 -4.0371 | GACTCGCGATACAAA GCCCAGTC AGCGTAA GACCGGGC CACAACAGGATAAGT TERM 679 647546 - 647524 - R 100 -14.1 -5.09259 | GACCTGAAAAGAAAA CGACCCGCC AGTGG GGCGGGCCG CATCAAAATCGATGG TM1040_0608 649058 - 647574 - | phosphate transporter TERM 680 649265 - 649237 - R 100 -14.5 -4.39329 | ATCGCACAGAATAAA GCCCCCGCACC GTTTTCG GGGGCGGGGGC TGATGCGGCCAGCGA TM1040_0609 649533 - 649309 - | hypothetical protein TM1040_0610 649950 - 649537 - | heat shock protein Hsp20 TM1040_0611 650146 - 650370 + | hypothetical protein TERM 681 650478 - 650510 + T 77 -7.7 -4.42386 | opp_overlap 650484, overlap 650481 650484 GCATGTTCAGAGACA AAAAAACGGCCCG CGCAAGA CGGGCCGTTGTTC TTTTCTGAATACAAG TERM 682 650481 - 650507 + T 79 -9.4 -4.33182 | opp_overlap 650484, overlap 650478 650484 TGTTCAGAGACAAAA AAACGGCCCG CGCAAGA CGGGCCGTTG TTCTTTTCTGAATAC TERM 683 650484 - 650504 + T 89 -11.1 -4.26938 | opp_overlap 650484, overlap 650481 650478 TCAGAGACAAAAAAA CGGCCCG CGCAAGA CGGGCCG TTGTTCTTTTCTGAA TERM 684 650504 - 650484 - T 100 -11.8 -5.76633 | opp_overlap 650484 650481 650478 TCAGAGACAAAAAAA CGGCCCGC GCAAG ACGGGCCG TTGTTCTTTTCTGAA TM1040_0612 652246 - 650528 - | bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein TM1040_0613 654220 - 652460 - | adenylate/guanylate cyclase TERM 685 654114 - 654088 - G 83 -4.2 -5.10154 | overlap 654094 ATGCAAAAGTAAAAA GCACAAGGCCGG AGA CCAGCCGGCTGC GGTGGATCCAGTTGC TERM 686 654108 - 654094 - G 71 -9.2 -3.78015 | overlap 654088 AAGTAAAAAGCACAA GGCCGG AGA CCAGCC GGCTGCGGTGGATCC TERM 687 654385 - 654356 - R 100 -16.5 -4.2231 | opp_overlap 654342 654384 AATGACCATGGAAAA GGCGCGCGAAG CGGTCAGT CTTCGCGCGCC TTCCAAGGAAAGGTT TM1040_0614 655347 - 654406 - | thioredoxin reductase TM1040_0615 655592 - 656092 + | AsnC family transcriptional regulator TM1040_0616 656890 - 656123 - | hypothetical protein TERM 688 657156 - 657180 + G 72 -12.1 -3.05596 | GGCGGATTTGGCGAC CGGAGCCTCTG CGT CAGAGGCGTCG TTGCGTCGGGCAATC TM1040_0617 657064 - 657369 + | hypothetical protein TM1040_0618 658341 - 657574 - | hypothetical protein TM1040_0619 659411 - 658338 - | hypothetical protein TERM 689 659263 - 659227 - G 71 -9.4 -3.80573 | gap 1, opp_overlap 659238 TGGACCAGCACCAAA CCCAGGAGTTC-GCCAA ACAT CTGGCTGATCTCCGGGG CGGTGATGAAATCGC TM1040_0620 660316 - 659408 - | prolipoprotein diacylglyceryl transferase TM1040_0621 660413 - 660676 + | hypothetical protein TERM 690 660697 - 660680 - f 70 -2.7 -4.73388 | gap 1, opp_overlap 660684 660686, overlap 660683 660686 AAGGCCGACTAAAAA GAA-CACG CGC CGCGCTTC GGTCGCTGTGTGGTC TERM 691 660768 - 660787 + F 86 -9.3 -4.81249 | opp_overlap 660768, overlap 660761 TTGAATATGGGAAAA GGGATGC ACATCG GCATCCC TTTTTCAGTTTGAGC TERM 692 660787 - 660768 - f 79 -9.3 -4.1964 | opp_overlap 660768 660761 TTGAATATGGGAAAA GGGATGC ACATCG GCATCCC TTTTTCAGTTTGAGC TM1040_0622 661243 - 661743 + | hypothetical protein TM1040_0623 661804 - 662619 + | pyrroline-5-carboxylate reductase TM1040_0624 662612 - 662962 + | secretion chaperone CsaA TM1040_0625 662962 - 663930 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TM1040_0626 664640 - 664038 - | thymidine kinase TERM 693 664175 - 664190 + g 77 -4 -5.0133 | gap 1 CTGTCGCGTCCTGAC GC-ACCA CCA TGGTTGC TTTTTTGCCGCAATG TM1040_0627 665179 - 665640 + | hypothetical protein TERM 694 665635 - 665656 + T 71 -4.3 -4.56597 | opp_overlap 665613, overlap 665634 665634 CTCGAAGAAGAGAGC GGCTGAGGC TGTC GTCTTTGCC TTTTTGCAGGGGCCA TERM 695 665693 - 665715 + T 100 -17.7 -4.54727 | TCGAGGATCTTGAGC CGCGCGCCC CATTC GGGCGCGCG TTTTGGTTTGGCCAG TM1040_0628 666878 - 665754 - | 3-oxoacyl-(acyl carrier protein) synthase III TM1040_0629 667095 - 667577 + | MarR family transcriptional regulator TERM 696 667716 - 667738 + G 100 -9 -5.0133 | TGACCGCCAATGGTG GCTCGGCGCC GCT GGAGCGGAGC TTTTTTGGCCAGGTA TERM 697 668081 - 668098 + G 70 -4 -4.59207 | overlap 668080 668079 668096 GATGCCCTGGTGGCG CGGCGC GAGGTG GCGCAG TTTTCTACTGTTTCT TM1040_0630 667574 - 668647 + | secretion protein HlyD TM1040_0631 668659 - 671709 + | acriflavin resistance protein TERM 698 671734 - 671756 + T 73 -12 -3.01712 | TCACGGCGTGCGAGA GTGCCTGCGA CCA TTGCAGGCGC TCTTCAACCAGCCCG TERM 699 671865 - 671826 - T 100 -14.5 -5.03994 | opp_overlap 671828 671834, overlap 671829 671834 GGCGAGACACAAAAA CAAGAAAAGCCCCG-GGGA TCTG TCCCGCGGGGCTTTTCC-G TTTGGGGGGAGATCA TERM 700 671828 - 671864 + T 82 -16 -2.71924 | gap 1, opp_overlap 671826 671829 671834, overlap 671834 CGAGACACAAAAACA AGAAAAGCCCCG-GGGA TCTG TCCCGCGGGGCTTTTCC GTTTGGGGGGAGATC TERM 701 671863 - 671829 - T 100 -19.5 -4.61353 | gap 1, opp_overlap 671828 671834, overlap 671826 671834 GAGACACAAAAACAA GAAAAGCCCCG-GGGA TCTG TCCCGCGGGGCTTTTC CGTTTGGGGGGAGAT TERM 702 671858 - 671834 - T 100 -13.6 -5.18715 | gap 1, opp_overlap 671834 671828, overlap 671829 671826 ACAAAAACAAGAAAA GCCCCG-GGGA TCTG TCCCGCGGGGC TTTTCCGTTTGGGGG TERM 703 671834 - 671858 + T 95 -13.6 -4.35524 | gap 1, opp_overlap 671829 671826 671834, overlap 671828 ACAAAAACAAGAAAA GCCCCG-GGGA TCTG TCCCGCGGGGC TTTTCCGTTTGGGGG TERM 704 672128 - 672154 + T 88 -16.6 -3.06815 | overlap 672130 GAAGGGGCCTGCGCC GGCCGGATTGCC AAT GGCGATCCGGTC TCTCTTGAGAGAGGT TERM 705 672130 - 672152 + T 85 -15.6 -3.09273 | overlap 672128 AGGGGCCTGCGCCGG CCGGATTGCC AAT GGCGATCCGG TCTCTCTTGAGAGAG TERM 706 672204 - 672185 - T 100 -12.8 -5.68039 | opp_overlap 672185 AAAGGCACAAAAAAA CGCCCCCG AAAC CGGAGGCG TTTTGAGGTCTTCTG TERM 707 672185 - 672204 + T 86 -10.6 -4.20712 | opp_overlap 672185 AAAGGCACAAAAAAA CGCCCCCG AAAC CGGAGGCG TTTTGAGGTCTTCTG TERM 708 672276 - 672286 + T 71 -6.8 -4.28432 | CGTCCTTCGCAGTTA GCCT TGC AGGC TTTTCACTTCGACTT carB 675635 - 672273 - | carbamoyl phosphate synthase large subunit TERM 709 673000 - 673020 + g 73 -10.3 -3.6682 | opp_overlap 672996, overlap 673001 673019 TTGGCGACAAACGGC ACCGTGCGC GAG GCGCGCGGG TTTACCTCAATCAGG TERM 710 673001 - 673019 + g 73 -13.8 -2.79878 | opp_overlap 672996, overlap 673000 TGGCGACAAACGGCA CCGTGCGC GAG GCGCGCGG GTTTACCTCAATCAG TERM 711 675158 - 675168 + g 75 -8.2 -4.18465 | CACCCGCCTCAAGGT CGGC GTT GCCG TTGTCTTTTTTCGGC TERM 712 676097 - 676118 + G 74 -12.3 -3.12668 | gap 1, overlap 676114 TGCAGTTCGGTGTGT TCCGCGCGCC GGT GGCG-GCGGA TGTTCCGCTTTGGGC TM1040_0633 675784 - 676980 + | para-aminobenzoate synthase component I TM1040_0634 676977 - 677582 + | hypothetical protein aspS 677748 - 679532 + | aspartyl-tRNA synthetase TERM 713 679559 - 679581 + T 100 -17 -4.93877 | CGACGGATTATGATG GGGGCTGCCA GTT TGGCGGCCCC TTTTCTTTGGTCCGC TERM 714 679748 - 679786 + T 74 -11.1 -3.25942 | gap 2 TCCTGGTCGGATTTC TTTGAGCGCCGCGTCGGGG CGC CCTCG-CGCAG-GCTCAAA TTCGTGTCGGGGGAT TM1040_0636 680846 - 680127 - | response regulator receiver protein TM1040_0637 681032 - 681436 + | methylmalonyl-CoA epimerase TM1040_0638 681506 - 681781 + | hypothetical protein TM1040_0639 682865 - 681912 - | LysR family transcriptional regulator TERM 715 683229 - 683248 + r 86 -7.2 -5.00884 | gap 1 GTGGCGCGCTGACTA TGG-CGCAT TGA ATGCGGCCA TTTTTTCGAGAAAAT TERM 716 683335 - 683314 - R 100 -13.7 -5.0133 | opp_overlap 683314 TACTGTTGCAAAAAA GCCGGACCA TCCG TGGCCCGGC TTTATCGATTTAAGT TERM 717 683314 - 683335 + r 83 -11.5 -4.02534 | opp_overlap 683314 TACTGTTGCAAAAAA GCCGGACCA TCCG TGGCCCGGC TTTATCGATTTAAGT TM1040_0640 683763 - 683422 - | hypothetical protein TM1040_0641 685609 - 683825 - | peptidase M24 TERM 718 683866 - 683894 + g 71 -8.7 -3.71873 | opp_overlap 683855 ACCACTCTGCCGCAG CGGCGCTGACGCG CGG CGCGATAGTGCGG TTTACCTCTGCGTGA TERM 719 685026 - 685038 + g 76 -9.1 -4.07687 | AGAGTGATGACCGCT GCGGA CTG TCCGC TTTTACGCAGGCCCT TERM 720 685868 - 685832 - R 85 -14.4 -3.53444 | CCATCCTTTTGCAAA TGCCGGGCCTGCAGTC ATTGG GGCTGCAGGCCTAGCA GACGCTCGTGAACGC TM1040_0642 687877 - 686000 - | cobalt chelatase, CobT subunit TERM 721 686801 - 686818 + g 71 -7 -4.15044 | GCGGTTCTGCTGCGC CTGCAG GCGACG CTGCAG TTTGTTGGCAAGCCG TERM 722 687555 - 687579 + g 80 -11.3 -3.77219 | CCCGGCATATCGCGC GCGCCCATCGC CTC GCAACGGGCGC TTTCCATTGCATCAT TM1040_0643 689023 - 688037 - | hydrogenobyrinic acid a,c-diamide cobaltochelatase TM1040_0644 689851 - 689252 - | CzcN domain-containing protein TERM 723 689308 - 689297 - G 70 -4.4 -4.56597 | opp_overlap 689281 GCGTTCGTCCAAAAA TCGA GGGG TCGA GCGCATGTAGTCGGC TERM 724 690053 - 690090 + r 87 -9.7 -4.62069 | opp_overlap 690058, overlap 690054 690057 GATCCATTGTCCAAA AGAAATCGCCCGCCCCT GTGA AGGGACGGGCGACTGCG TTTTTCACCTGCAGA TERM 725 690054 - 690089 + r 78 -13.2 -3.3692 | opp_overlap 690058, overlap 690053 690057 ATCCATTGTCCAAAA GAAATCGCCCGCCCCT GTGA AGGGACGGGCGACTGC GTTTTTCACCTGCAG TERM 726 690057 - 690086 + r 76 -13.5 -2.84617 | opp_overlap 690058, overlap 690054 690053 CATTGTCCAAAAGAA ATCGCCCGCCCCT GTGA AGGGACGGGCGAC TGCGTTTTTCACCTG TERM 727 690085 - 690058 - R 100 -19.2 -4.65263 | opp_overlap 690057 690054 690053 ATTGTCCAAAAGAAA TCGCCCGCCCCT GTGA AGGGACGGGCGA CTGCGTTTTTCACCT TM1040_0645 690795 - 690169 - | heat shock protein DnaJ-like TERM 728 690720 - 690736 + g 89 -5.1 -5.29445 | overlap 690700 690724 AGGCGCCGGACATGC TCCGC CGCCCGC GCGGA TTTTTCTTCTTCGCG TM1040_0646 690913 - 691167 + | BolA-like protein TERM 729 691170 - 691208 + T 70 -9.5 -3.37879 | opp_overlap 691172 691175, overlap 691171 691174 CATCGGCAGCTGAGA CACAAGATCCGGCCACG CCTAA TGTGGCCGGATCCTGCA TTCGTTGGACTTAGT TERM 730 691171 - 691207 + T 73 -13 -2.62246 | opp_overlap 691172 691175, overlap 691170 691174 ATCGGCAGCTGAGAC ACAAGATCCGGCCACG CCTAA TGTGGCCGGATCCTGC ATTCGTTGGACTTAG TERM 731 691206 - 691172 - T 90 -18 -2.89564 | opp_overlap 691171 691170 691174, overlap 691175 TCGGCAGCTGAGACA CAAGATCCGGCCAC GCCTAAT GTGGCCGGATCCTG CATTCGTTGGACTTA TERM 732 691174 - 691204 + T 75 -13.3 -2.60423 | opp_overlap 691172 691175, overlap 691171 691170 GGCAGCTGAGACACA AGATCCGGCCACG CCTAA TGTGGCCGGATCC TGCATTCGTTGGACT TERM 733 691203 - 691175 - T 91 -16.1 -3.59698 | opp_overlap 691174 691171 691170, overlap 691172 GCAGCTGAGACACAA GATCCGGCCAC GCCTAAT GTGGCCGGATC CTGCATTCGTTGGAC TM1040_0647 691788 - 691219 - | hypothetical protein TM1040_0648 693112 - 691865 - | peptidase T TM1040_0649 694622 - 693219 - | hypothetical protein TERM 734 695902 - 695921 + G 71 -7 -4.20074 | CAGAGAGCGATCTTG GCACGGCG GCAG CGCTGAGC TTTTCCAATCTCTTT TM1040_0650 694800 - 696089 + | hypothetical protein TERM 735 696416 - 696440 + G 71 -7.7 -4.07568 | GTCGCCCTTGCCAAC GCGGATTGGGC CGG GCCAGAGCCGC TTTTGACGGCGGGGC TM1040_0651 696203 - 698143 + | AsmA TERM 736 698246 - 698280 + T 100 -20.1 -4.67353 | gap 1, opp_overlap 698246 698248 GATGATGCATAGATA CACGGCCGCGCCCCTC GTAT GAGGG-CGCGGTCGTG TTTTTGCCTGGATCA TERM 737 698280 - 698246 - T 90 -17.9 -3.01416 | gap 1, opp_overlap 698246, overlap 698248 GATGATGCATAGATA CACGGCCGCGCCCCTC GTAT GAGGG-CGCGGTCGTG TTTTTGCCTGGATCA TERM 738 698278 - 698248 - T 81 -14.7 -3.05993 | gap 1, opp_overlap 698246, overlap 698246 TGATGCATAGATACA CGGCCGCGCCCCTC GTAT GAGGG-CGCGGTCG TGTTTTTGCCTGGAT TM1040_0652 699789 - 698293 - | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 739 698774 - 698750 - G 76 -9.3 -4.00042 | TCGGCGAGGAAATAA TGGCCGGATTT CTC AAAACCAGCCA GGGCGCCAATTTCCT TERM 740 698832 - 698845 + g 81 -5.2 -4.87786 | CGGTTTTCCAGTAGT CGGC TTTGAC GCCG TTTTTCTGCAGTTCC TERM 741 699514 - 699553 + g 81 -7.8 -4.72272 | gap 1, opp_overlap 699481, overlap 699516 AGGTCCGATGTCCTT CACTTTGATCC-CGGCCTG CAT CAGGCCAAGGATCAGCGCG TTTTTGATCGCCAGC TM1040_0653 700646 - 699813 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 742 700220 - 700236 + g 75 -2.1 -4.87626 | overlap 700222 TGTCCATGTCCCAGG GTGCGAG AAA CTGGCCC TTTTTGATGTTCACG TM1040_0654 702408 - 700651 - | capsule polysaccharide export protein-like TERM 743 702329 - 702346 + g 72 -12.7 -3.05844 | GGGCGAGCGGTCGCC GCCGCAG CGGC CTGCGGC TGTTCAGCTCCCGAG TM1040_0655 703045 - 702386 - | ABC transporter related TERM 744 703637 - 703655 + G 100 -8.8 -5.07652 | CGACACCAGCCGCGT GGCCATTG TGC CCATGGCC TTTTGTTTTCCCGGC TM1040_0656 703380 - 703982 + | uracil-DNA glycosylase superfamily protein TM1040_0657 703975 - 704766 + | hypothetical protein TERM 745 704896 - 704854 - T 100 -14.9 -4.08767 | gap 1, overlap 704859 704892 CGCAGTCCCCGAAAA CG-GAACTGGCCGCACGCCC GGTA GAGCATGCGACCAGATCGCG ACTGCAAACAGCGGG TERM 746 704890 - 704859 - T 90 -16.6 -3.36823 | overlap 704854 TCCCCGAAAACGGAA CTGGCCGCACGCCC GGTA GAGCATGCGACCAG ATCGCGACTGCAAAC TM1040_0658 705784 - 704912 - | putative glutathione S-transferase YghU TERM 747 705887 - 705873 - H 70 -5 -4.51174 | GGACGATAATGAAAA TTCCAA TGA CTGGAA GGTCTGTAGCTGTAA TERM 748 705925 - 705907 - H 84 -5.2 -5.03314 | overlap 705908 705909 TGTAGCTGTAAAAAA TCGCACAG GCT CTGTGCAC AGGGGAGATTGCATT TERM 749 705969 - 705979 + H 82 -8.2 -4.61873 | CTGTGCCAGCCATGC GCGC TCA GCGC TTTTCATTTGTGCAC TM1040_0659 706043 - 706831 + | hypothetical protein TM1040_0660 706831 - 707241 + | hypothetical protein TM1040_0661 707349 - 707921 + | hypothetical protein TERM 750 707955 - 707974 + T 100 -15 -4.82901 | opp_overlap 707955 ACCGAGACTCAGAAA GCCCCGCA GCGA TGCGGGGC TTTTTGTCGAGCAGG TERM 751 707974 - 707955 - T 95 -15 -3.9534 | opp_overlap 707955 ACCGAGACTCAGAAA GCCCCGCA GCGA TGCGGGGC TTTTTGTCGAGCAGG TERM 752 708037 - 708002 - T 86 -10.4 -4.2461 | gap 1, opp_overlap 708001, overlap 708007 AGGCGCATGAAGAAA CGAAACCCCGGCGTGCC AGT GGCA-GCCGGGGTTGAA ATCTGTGTCGGCGCT TERM 753 708032 - 708007 - T 100 -16.9 -4.22748 | gap 1, opp_overlap 708001, overlap 708002 CATGAAGAAACGAAA CCCCGGCGTGCC AGT GGCA-GCCGGGG TTGAAATCTGTGTCG TM1040_0662 708688 - 708098 - | GcrA cell cycle regulator TERM 754 708482 - 708500 + g 78 -3 -5.10933 | overlap 708484 AGCCTTGGGCTTTGC GGCCGC CTTGGGC GCGGGC TTTTCTTTTGGCTCG TERM 755 708737 - 708709 - H 78 -13.1 -3.27525 | overlap 708704 708711 GCCTTTCAAAGCTAA TAGCGGCCTCAAG AAA CCTGTGGCCGCCA TCGAATTCCAGAGTT TERM 756 708735 - 708711 - H 78 -13.5 -3.20349 | overlap 708709 708704 CTTTCAAAGCTAATA GCGGCCTCAAG AAA CCTGTGGCCGC CATCGAATTCCAGAG TERM 757 709467 - 709477 + G 71 -8.2 -4.03234 | opp_overlap 709440 CCAATTTTGTGGTGA CGCC ATT GGCG TTTCTGTCCGGCACG TM1040_0663 708878 - 709702 + | ABC-2 type transporter TM1040_0664 710691 - 709699 - | hypothetical protein TERM 758 710485 - 710473 - G 77 -3.3 -4.92828 | AAAGGCAAAAACAAA CCGTC CCT GACTG ATCTGCAAGGCGTGC TM1040_0665 710999 - 712174 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 759 712420 - 712431 + G 85 -7.2 -4.75288 | opp_overlap 712413 712412, overlap 712414 TTGAAAAGCCCTCGA CCCG GACG CGGG TTTCTTTTGATGTCG TM1040_0666 712251 - 713177 + | ornithine carbamoyltransferase TM1040_0667 714860 - 713370 - | phosphate transporter TM1040_0668 715449 - 714982 - | NUDIX hydrolase TERM 760 715589 - 715603 + r 73 -9.2 -3.99806 | ATCAATTCCCGCTAG CGCTGG GCC CCGGCG TTTATGATGGCTTAT TM1040_0669 718154 - 715629 - | ATP-dependent helicase HrpB TERM 761 716258 - 716273 + g 78 -10.4 -3.90744 | opp_overlap 716260 716268 GGTCGTCCAGCACCA GAGCGC CAAA GCGCTC TTGTTTGCGCGCGAC TERM 762 717160 - 717201 + g 70 -12.1 -2.87931 | overlap 717163 GCGCTCACGCGACCT GCGCGCCCCTGGCGTTGAG TGGC CTCGGCGCGGGTGACGCGC TCTGTCACAAGTCGC TERM 763 717506 - 717485 - G 73 -4.4 -4.60746 | gap 1 GCAAAAACACCAAAA GACCGCCGC TGCCC GCG-CGATC ATCCTTGTCGCGGGT TM1040_0670 718401 - 719402 + | arginine/ornithine transport system ATPase TERM 764 719500 - 719489 - f 74 -7.2 -4.28049 | overlap 719490 GCTAAAACTGTAAAA GCGC GCCA GCGC CAGTGGGGATCACGC TERM 765 719602 - 719624 + F 91 -16.2 -3.60151 | opp_overlap 719593 ATCCAACCAGTTTTC GGGCGCAGCC AAT GGCAGCGCCC TTGTAATTTGGCGAC rpmB 719704 - 719994 + | 50S ribosomal protein L28 TERM 766 720059 - 720034 - f 77 -11.2 -3.57119 | gap 1, opp_overlap 720034 CAGATATTCTGGAAA GACCACCGTGC TTCGC GC-CGGTGGTC TTTTTGCATGCTGTA TERM 767 720034 - 720059 + F 100 -11.9 -4.69664 | gap 1, opp_overlap 720034 CAGATATTCTGGAAA GACCACC-GTGC TTC GCGCCGGTGGTC TTTTTGCATGCTGTA TM1040_0672 720156 - 720500 + | hypothetical protein TM1040_0673 720577 - 721068 + | hypothetical protein TERM 768 721121 - 721100 - T 90 -15.9 -3.51365 | opp_overlap 721100 CGAGATGTCAGACAA GGCTCCGGT TATG ACCGGAGCC TTTTTTTACGCAGCG TERM 769 721100 - 721121 + T 100 -15.9 -5.40072 | opp_overlap 721100 CGAGATGTCAGACAA GGCTCCGGT TATG ACCGGAGCC TTTTTTTACGCAGCG TM1040_0674 721825 - 721127 - | NAD-dependent deacetylase TERM 770 722239 - 722206 - g 71 -5.9 -4.37527 | gap 1, opp_overlap 722230 722231 722233, overlap 722207 GGACAATCAGGAAAA CGTCGAGTC-CCTGCG CCC CGCGGGAGACCGGACA CCGGTAGTTTTATTT TERM 771 722230 - 722246 + G 72 -2.1 -4.86731 | opp_overlap 722207 722206, overlap 722231 722233 CCTGCGCCCCGCGGG AGACCGG ACA CCGGTAG TTTTATTTGCACCGA TM1040_0675 721940 - 722389 + | protein tyrosine phosphatase TERM 772 722493 - 722458 - T 95 -16.9 -3.55444 | gap 1, opp_overlap 722452 GTCGTATGCGGGAAA TCGCAGTCTGGGCGCG GGTGA CGCGCCCAGGC-GCGA GGATCACTCTTCGAT TM1040_0676 723462 - 722497 - | LysR family transcriptional regulator TERM 773 723448 - 723426 - G 70 -4 -4.64657 | opp_overlap 723440, overlap 723416 723428 CCAAAGCTTCAAAAA CTTCAAGCCC TCT GAGCGTGACG CCTTTCATAAGCATA TERM 774 723667 - 723692 + r 86 -6.3 -5.01732 | gap 1, opp_overlap 723667 TTTTGAAAGAAAAAA TGGTTAAT-TGC AGC GCGGATTAACCA TTTTTTAACAGAGTT TERM 775 723692 - 723667 - R 89 -4.1 -5.63517 | gap 1, opp_overlap 723667 TTTTGAAAGAAAAAA TGGTTAAT-TGC AGC GCGGATTAACCA TTTTTTAACAGAGTT TM1040_0677 724040 - 723729 - | hypothetical protein TM1040_0678 724251 - 726050 + | GTP-binding protein LepA TERM 776 726057 - 726077 + F 100 -10.4 -4.8622 | opp_overlap 726052 726057 726059 GACGACTGAACAAAA GGCCTCCC CTCGC GGGAGGTC TTTTTGATTGAGAGA TERM 777 726077 - 726057 - f 85 -8.2 -4.69053 | opp_overlap 726057, overlap 726052 726059 GACGACTGAACAAAA GGCCTCCC CTCGC GGGAGGTC TTTTTGATTGAGAGA TM1040_0679 726193 - 727596 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase TM1040_0680 728786 - 727602 - | HI0933-like protein TERM 778 728810 - 728798 - H 77 -10.5 -3.79747 | GCATCGACCACGAAA GCGCG CAC CGCGC AAGGCGCAGCAACAG TERM 779 729740 - 729759 + G 76 -10 -3.83502 | opp_overlap 729738, overlap 729743 GCTATGCGACCAATG CGATCCGC GAGG GCGGATTG TTTGGTGTCGGCGTC TERM 780 729743 - 729756 + G 71 -8.1 -4.04806 | opp_overlap 729738, overlap 729740 ATGCGACCAATGCGA TCCGC GAGG GCGGA TTGTTTGGTGTCGGC TERM 781 729953 - 729971 + G 75 -8.1 -4.19238 | overlap 729944 TCATCCGCCTTGCCG GTGCGGG GCTTG CCTGCAC TTTTGGGGTTCAGGC TM1040_0681 729001 - 730170 + | cell division protein FtsW murG 730217 - 731314 + | N-acetylglucosaminyl transferase TERM 782 731716 - 731678 - g 79 -8.9 -4.14739 | gap 1, opp_overlap 731681 731714 GCACCCACGGCAAAA CCACCACCACCA-CCATG ATGG CAGAGCTGATGGTGGCGG GTGGCTTTGATCCGA murC 731311 - 732720 + | UDP-N-acetylmuramate--L-alanine ligase TERM 783 732841 - 732825 - f 83 -15.1 -3.1875 | CAGACGGTAAGCGAA GCGCCGC GCT GCGGCGC CCAGTGCTGGAATTA TERM 784 733051 - 733033 - g 74 -7.3 -4.39166 | overlap 733035 TGTGACATATGAAAA CGGCCCC TGGTG GGGGCTG GCGATGCTGGTGGCC TM1040_0684 732884 - 733126 + | hypothetical protein TM1040_0685 733268 - 734194 + | UDP-N-acetylmuramate dehydrogenase TM1040_0686 734517 - 735437 + | D-alanine--D-alanine ligase TERM 785 735841 - 735828 - g 71 -8.1 -4.08767 | TTGATCCTGTGAAAA CCGCA TCGG TGCGG ATCCGGCCCGGAGGG TM1040_0687 735425 - 736324 + | cell division protein FtsQ TM1040_0688 736308 - 737660 + | cell division protein FtsA TERM 786 737803 - 737789 - f 70 -10 -3.38522 | overlap 737787 TATCTACCCTAAACA CGCTGA AAA TCAGCG ACGTGCGAGGCCGAG TM1040_0689 738085 - 739758 + | cell division protein FtsZ TERM 787 739802 - 739781 - f 75 -10.1 -3.75229 | opp_overlap 739783, overlap 739783 TAAATCACACCCAAA GAGACCGCC GAGA GGCGGTCTT TTTTTGTTTTGTTTC TERM 788 739783 - 739800 + F 100 -12.7 -6.17669 | opp_overlap 739783 739781 AATCACACCCAAAGA GACCGCC GAGA GGCGGTC TTTTTTTGTTTTGTT TERM 789 739800 - 739783 - f 79 -12.7 -3.44888 | opp_overlap 739783, overlap 739781 AATCACACCCAAAGA GACCGCC GAGA GGCGGTC TTTTTTTGTTTTGTT lpxC 739957 - 740904 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 790 740957 - 740975 + F 100 -11 -5.22039 | opp_overlap 740957 GAGTGCTCTTGGAAA CGGTCGAT GAC ATCGGCCG TTTTTTGCATTTCCG TM1040_0691 741250 - 742101 + | competence lipoprotein ComL, putative TM1040_0692 742178 - 743827 + | DNA repair protein RecN TERM 791 744055 - 744068 + G 70 -4.5 -4.56978 | gap 1, overlap 744057 GTCATTGGGGTGCTC GCTGGC TTT GCC-GC TTTGTTCTTTCGCAA TERM 792 744804 - 744819 + G 75 -2.4 -4.91873 | overlap 744799 744797 GCCGCGCTGGTTGCG CCCGAC CGTA GCTGGG TTTTTGCTTGGTCTG TERM 793 745403 - 745441 + G 76 -7.2 -4.56597 | opp_overlap 745400, overlap 745404 TCGATGAAGGCATCG CCATCAGCCCCACCTCCA CGC TGGAGGCGGCGCTGCCGA TTTTTGACCGGGCAG TM1040_0693 743914 - 745608 + | Cl- channel, voltage gated TM1040_0694 746419 - 745727 - | hypothetical protein TM1040_0695 746994 - 746416 - | nitroreductase TERM 794 746805 - 746817 + g 73 -9.1 -3.85817 | TCAGGTCGCCGAGCC GCTGC ATG GCAGC TTTCTCGACCACGAT TM1040_0696 747262 - 747540 + | hypothetical protein TM1040_0697 747890 - 747648 - | hypothetical protein TM1040_0698 748019 - 748678 + | peptidase M48, Ste24p TERM 795 748712 - 748700 - g 85 -3.3 -5.31275 | overlap 748707 CCCGATGACAAAAAA GACAG AGG CCGCC GAGAAGGCGCTTACA TM1040_0699 748689 - 749069 + | hypothetical protein TM1040_0700 749165 - 749440 + | hypothetical protein TERM 796 749468 - 749489 + T 91 -10.1 -4.7033 | opp_overlap 749470, overlap 749470 GTCTCTGACGTGAAA AAGGCGACC TTGC GGTCGCCTC TTTTGTCTTACGTTC TERM 797 749470 - 749487 + T 89 -12.7 -3.95375 | opp_overlap 749470, overlap 749468 CTCTGACGTGAAAAA GGCGACC TTGC GGTCGCC TCTTTTGTCTTACGT TERM 798 749487 - 749470 - T 95 -12.7 -4.62069 | opp_overlap 749470 749468 CTCTGACGTGAAAAA GGCGACC TTGC GGTCGCC TCTTTTGTCTTACGT gatB 751024 - 749516 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 799 749604 - 749618 + g 74 -5.6 -4.43911 | opp_overlap 749603 TGACCGACGAACCAG CCCGCA AGC TTCGGG TTTTCCTTGGCCTTT TERM 800 751167 - 751130 - R 90 -15.5 -3.53012 | opp_overlap 751130, overlap 751131 TCTTGCCCTTCGAAA CGCGGGACTGGCGCCCC ATAC GGGACGCCAGTCAGGCA AGGTTTGTCGCCAAG TERM 801 751166 - 751131 - R 85 -16.8 -2.71712 | opp_overlap 751130, overlap 751130 CTTGCCCTTCGAAAC GCGGGACTGGCGCCCC ATAC GGGACGCCAGTCAGGC AAGGTTTGTCGCCAA TM1040_0702 751918 - 751184 - | extracellular solute-binding protein TERM 802 751884 - 751874 - G 70 -3.2 -4.72272 | overlap 751879 GCCCGCCATTAAAAA CGAG ACA CTCA GAGCGATGGCCCACT TERM 803 753268 - 753246 - g 70 -3.3 -4.62069 | opp_overlap 753247, overlap 753247 753250 GTTCCAGCCGAAAAA CGATCTGCG TGGTG CGCAGGTCT CCATTCTGAAGCTCA TERM 804 754061 - 754039 - g 70 -3.2 -4.59773 | opp_overlap 754039 754041, overlap 754040 754041 GCGGAGCTGGAAAAA CCGGGGCGTG ATC CACGTCCCTC TTTCGTCACCGCAAG TERM 805 754041 - 754059 + G 79 -12.4 -3.44848 | opp_overlap 754041 754040 754039, overlap 754039 GGAGCTGGAAAAACC GGGGCGTG ATC CACGTCCC TCTTTCGTCACCGCA TM1040_0703 752089 - 754533 + | RNA binding S1 TM1040_0704 756002 - 754656 - | hypothetical protein TM1040_0705 756643 - 756188 - | hypothetical protein TM1040_0706 759197 - 756633 - | alanyl aminopeptidase TERM 806 759269 - 759301 + r 70 -9.8 -3.53012 | gap 1, opp_overlap 759259 759272, overlap 759270 759272 CAAGACCTATGCAAC CGAGGGCAGGGGGGC AAGC GCCCTTC-GCCCTCA TTTGAAAGGAGAAGC TERM 807 759270 - 759300 + r 75 -13.3 -2.71712 | gap 1, opp_overlap 759259 759272, overlap 759269 759272 AAGACCTATGCAACC GAGGGCAGGGGGGC AAGC GCCCTTC-GCCCTC ATTTGAAAGGAGAAG TERM 808 759602 - 759581 - R 100 -14.4 -4.89063 | opp_overlap 759581 GCATTCAAAAAGAAA GGGCGCCC TGATTG GGGCGCCC TTCTTGGTATTTGGG TERM 809 759581 - 759602 + r 95 -15.1 -3.8613 | opp_overlap 759581 GCATTCAAAAAGAAA GGGCGCCCT GATT GGGGCGCCC TTCTTGGTATTTGGG TM1040_0707 761062 - 759629 - | NAD(P) transhydrogenase, beta subunit pntA 762650 - 761076 - | NAD(P) transhydrogenase subunit alpha TERM 810 762581 - 762625 + g 78 -4.2 -4.75288 | gap 2, overlap 762583 GCTTCTGAAGATCTT TTGCCGAGGCTGGCGTCATCGC AAC GCGC-GAC-TCGCCCTCGGCTA TTTCTTTTGGTGTGC TERM 811 762757 - 762717 - H 74 -10.6 -3.56811 | gap 1, opp_overlap 762732 762736, overlap 762732 762744 762745 CAAACACATTAAATA CACAGCGCAACAAAATTGC GCAA GCAATTT-GCTGCGTTGCG GCAAGAAACTGAAAT TERM 812 762743 - 762732 - H 71 -4.4 -4.66987 | opp_overlap 762732 762736, overlap 762717 CACAGCGCAACAAAA TTGC GCAA GCAA TTTGCTGCGTTGCGG TM1040_0709 762745 - 762972 + | hypothetical protein TM1040_0710 763779 - 762988 - | peptidase C26 TERM 813 763882 - 763907 + r 95 -17.7 -3.48593 | opp_overlap 763877 TATGCACAGACCTCA TGTCTCAGCCC CTTC GGGCTGAGACA TTGTATCAAGGGCTG TM1040_0711 766052 - 763923 - | malate synthase G TERM 814 765346 - 765381 + g 71 -5.4 -4.40561 | gap 1, overlap 765319 765348 CCTTTGCCGATGTTG CCGCTTGCGT-CGATCT CGA GGATCGCGTGCAGGCCG TTGTTTTTCAGCAGG TERM 815 766019 - 766003 - G 71 -5.7 -4.36914 | overlap 766007 TGGTCCTCTACAAAA GCCACCA GTT CGGAGGC GACCTGAAGTCCATT TERM 816 766955 - 766937 - g 80 -11.6 -3.84246 | opp_overlap 766934 766937 TCGTGAACGAGGAAA CCGGCCCG CAG CGGGTCGG TCGTGTGGTGCAGCG TERM 817 766937 - 766955 + G 72 -13.8 -2.66316 | opp_overlap 766937, overlap 766934 TCGTGAACGAGGAAA CCGGCCCG CAG CGGGTCGG TCGTGTGGTGCAGCG TM1040_0712 766372 - 767652 + | hypothetical protein TERM 818 767719 - 767700 - T 91 -12.1 -4.39571 | opp_overlap 767700 TCCAGAAACGCAAAA GGCCGCC TCACCG GGCGGCC TTTCTTTTGGGTGTA TERM 819 767700 - 767719 + T 100 -12.8 -4.70515 | opp_overlap 767700 TCCAGAAACGCAAAA GGCCGCCT CACC GGGCGGCC TTTCTTTTGGGTGTA TM1040_0713 768734 - 767742 - | binding-protein-dependent transport systems inner membrane component TM1040_0714 769734 - 768727 - | binding-protein-dependent transport systems inner membrane component TERM 820 769915 - 769880 - R 100 -19.7 -3.09492 | TGGGTAACGCGAATA CCAGTGGGCCCCGGC GGTGAA GCCGGGGCCCTCTAG AGTGCGGACGGACGC TM1040_0715 771628 - 769931 - | extracellular solute-binding protein TERM 821 770723 - 770750 + g 70 -9.8 -3.46509 | overlap 770714 ACGGATCACCGAACG CTCTTCCGGGGA GAGA TCCGCGGAGGGG TTGGTGTTGTTGAGC TERM 822 772404 - 772391 - g 90 -5.9 -5.28176 | overlap 772394 GGGATGGACAAAAAA CAGGC AGAG GCCCG GGCCATCGAGATTCT TM1040_0716 771989 - 773809 + | ABC transporter related TM1040_0717 773813 - 774979 + | acetylornithine deacetylase TERM 823 775017 - 775038 + F 71 -9.3 -3.82083 | overlap 775018 CCCGCAGGCCTCGAT CCGCGTGGC GCAT GCCGCGCGC TTTCGATTGTCGTGC TERM 824 775018 - 775037 + F 74 -12.8 -2.88768 | overlap 775017 CCGCAGGCCTCGATC CGCGTGGC GCAT GCCGCGCG CTTTCGATTGTCGTG TM1040_0718 775182 - 776354 + | peptidase M20D, amidohydrolase TERM 825 776374 - 776355 - f 70 -10 -3.41602 | gap 1, overlap 776356 GCCAGCTCATCATAA GGGCGCTGC GTT GCAGC-CCC TGTGCACCCGGCCGC TM1040_0719 776435 - 777598 + | peptidase M20D, amidohydrolase TERM 826 777639 - 777621 - T 88 -13.8 -3.78904 | opp_overlap 777621, overlap 777613 CATCAAAGTGAAGAA GGGGGCCA CTT CGGCCCCC TTTTTTGTGCAACCG TERM 827 777621 - 777639 + T 100 -13.1 -5.24129 | opp_overlap 777621 777613 CATCAAAGTGAAGAA GGGGGCC ACTTC GGCCCCC TTTTTTGTGCAACCG TM1040_0720 778089 - 777706 - | hypothetical protein TERM 828 778191 - 778212 + r 76 -3.7 -4.91109 | opp_overlap 778178, overlap 778178 AATCCGGAAAATGTT CCGAAAATT TTAT GATATTCGG TTTTTGTGATGCGGG TM1040_0721 778766 - 778374 - | hypothetical protein TM1040_0722 780093 - 779020 - | glycosyl transferase, group 1 TM1040_0723 781408 - 780104 - | three-deoxy-D-manno-octulosonic-acid transferase-like moaA 782427 - 781420 - | molybdenum cofactor biosynthesis protein A TERM 829 781505 - 781487 - G 79 -8.8 -4.21194 | CGGGAGTAGTCAAAA TCATGCCC TTT GGGCTTGA GGTTGATGGCCGCGC TERM 830 782205 - 782188 - G 70 -3.3 -4.62783 | CATCGAGCGGAAAAA CGTCATG ATGT CACGGCG CACCAGAGGCTCTCC TERM 831 782361 - 782343 - G 71 -6.6 -4.23213 | overlap 782347 CGGACATGCAATAAA CGCAGCGA AAA TCGCAACG GTCCGTAACCGAGAC TERM 832 782667 - 782679 + G 70 -10.5 -3.54424 | opp_overlap 782667 GGCGTTCGGATCGAA CCGGC GCG GCCGG TTTCGCCCGATGCAC TM1040_0725 782613 - 783122 + | hypothetical protein TM1040_0726 783826 - 783149 - | hypothetical protein TM1040_0727 785631 - 783823 - | D-fructose-6-phosphate amidotransferase TM1040_0728 786985 - 785636 - | UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase TERM 833 786676 - 786666 - G 79 -8.2 -4.52589 | TCGGCCGACACAAAA GGCG TAT CGCC ATAGAGCACCACGAC TERM 834 786981 - 787004 + g 83 -4.5 -5.06414 | ATGACGAGGGCAGTG CTCATGGGG TGTTTT CCCTTTGAG TTTTTGTTGCCCCCG TM1040_0729 787121 - 787798 + | HAD family hydrolase TM1040_0730 788300 - 787842 - | hypothetical protein TM1040_0731 788430 - 789647 + | DegT/DnrJ/EryC1/StrS aminotransferase TM1040_0732 789814 - 790977 + | isovaleryl-CoA dehydrogenase TERM 835 791325 - 791309 - g 86 -15.1 -3.40522 | ATTGCGCCAGGAGAA GGCGCGC CAC GCGCGCC ACAGACCTGACCGCG TM1040_0733 790985 - 791335 + | hypothetical protein TERM 836 791413 - 791393 - T 100 -14 -5.4505 | overlap 791378 CGGTGGAACAAAAAA GCGCCACC ATGAA GGTGGCGC AACTGGGATGGAAAT TM1040_0734 792066 - 791464 - | OmpW TM1040_0735 792161 - 793741 + | AMP-dependent synthetase and ligase TERM 837 793783 - 793797 + G 90 -5.6 -5.17353 | overlap 793773 793785 GACCAGCATGTCGCT TGGGCG TCG CGCCTG TTTTTTCATACCTGT TERM 838 793785 - 793795 + G 75 -8.2 -4.2131 | overlap 793773 793783 CCAGCATGTCGCTTG GGCG TCG CGCC TGTTTTTTCATACCT TERM 839 793955 - 793965 + G 85 -5.4 -5.1104 | TTGTATCGCGCGCAA TACC ACT GGTA TTTTTCTCTCTGTTT TM1040_0736 793741 - 794145 + | hypothetical protein TERM 840 794310 - 794287 - g 76 -10.2 -3.83026 | opp_overlap 794300 GCGCCCGACATGAAA GTCGCGGCAA GATG CTGCCGCGCC GCCGGGTGGCGAACC TM1040_0737 794142 - 795746 + | propionyl-CoA carboxylase TERM 841 796836 - 796856 + G 70 -12.5 -2.87344 | overlap 796841 ACCTTTCCATTACCG GCCACGCCT TTG AGGCGCGGC TCTATGCCGAGGATG TERM 842 797466 - 797454 - g 70 -3.3 -4.66609 | opp_overlap 797425, overlap 797455 CACCCTATGCAAAAA GTGGC GAC GCCAT CACGATTTTTGACGG TM1040_0738 795827 - 797764 + | 3-methylcrotonoyl-CoA carboxylase, alpha subunit TM1040_0739 797797 - 798663 + | hydroxymethylglutaryl-CoA lyase TERM 843 798811 - 798843 + G 76 -9.8 -3.84406 | gap 1, opp_overlap 798770 798798 AACTGCAGGATGCGG CGCGCGCGTTGGCGG CGGA CCGC-AGCGTGCGGG TTGTTGTACTCACGG TERM 844 798953 - 798931 - g 77 -11.9 -3.57263 | AGGCTGATGCCGAAA CGCGCGGGC GCGAG GCCCGCGTG CTGGCCGAGATGCTG TERM 845 798984 - 799018 + G 72 -13.7 -2.52464 | gap 2, opp_overlap 798982, overlap 798986 AACCTTCTCAACACC TTG-CC-GCAGCCGCTC ATT GGGCGGCTGCAGGGCAA TGCCTTCGGGGGCGG TERM 846 799184 - 799194 + G 78 -6.8 -4.72272 | ACGTCGCGTATTCAT GTCG GCG CGAC TTTTTGATGCAGCCG TM1040_0740 798693 - 799478 + | enoyl-CoA hydratase TERM 847 799490 - 799479 - f 71 -7.2 -4.06419 | TGGCGTGACAAATAA GGGG AATT CCCC TCTGCGAGCGCAGCA TERM 848 799495 - 799517 + F 100 -11.3 -4.72272 | GGGAATTCCCCTCTG CGAGCGCAG CACGT TTGCGCTCG TTTTTGATGCACACA TM1040_0741 799720 - 800085 + | NADH dehydrogenase subunit A TM1040_0742 800085 - 800609 + | NADH dehydrogenase subunit B TERM 849 800747 - 800729 - g 73 -10.2 -3.68506 | opp_overlap 800728 800725 GAACATCGACGTAAA GCCCGCCA ACA TCGCGGGC CTCGTTGAATTCCTG TM1040_0743 800625 - 801230 + | NADH dehydrogenase subunit C TERM 850 801452 - 801482 + G 73 -13.2 -2.82635 | opp_overlap 801444 ACATCAACTTCGGCC CGCAGCACCCTGCG GCG CACGGCGTGCTGCG TCTGGTGCTGGAACT TM1040_0744 801379 - 802590 + | NADH dehydrogenase subunit D TM1040_0745 802587 - 803081 + | hypothetical protein TM1040_0746 803081 - 804277 + | NADH dehydrogenase subunit E TM1040_0747 804336 - 804566 + | hypothetical protein TERM 851 805170 - 805134 - g 78 -2.8 -5.0538 | opp_overlap 805159 805160, overlap 805135 805136 CTTGAGGGCAAAAAA GGCATGCCGCGCATGA AGCCG CCATTCCCGGCAGGCG CGGGGCTTTATGGCT TM1040_0748 804573 - 805871 + | NADH dehydrogenase I subunit F TM1040_0749 805880 - 806239 + | hypothetical protein TERM 852 806301 - 806331 + F 70 -11.3 -2.97747 | gap 2 TAACAGCGCGCTGCA CTCC--CGTGGTTCC ATT GGAACCACGAAGGAG TCTGTCATGTCCAAA TM1040_0750 806338 - 806802 + | hypothetical protein TERM 853 806891 - 806909 + G 81 -5.3 -4.8048 | gap 1, overlap 806860 806892 806908 AGGCTTGCGAGCAGG C-CGGGAT CGAG ATCCCGCG TTTTTGCTATCACGA TERM 854 807879 - 807852 - g 81 -13.4 -3.35679 | opp_overlap 807857 CTGCCGCACGGATAA TGCGCGCCTGCC CATT GGCAACCGCGCA GGCTATGTGGGCACC TM1040_0751 806806 - 808788 + | NADH dehydrogenase subunit G TM1040_0752 808785 - 809177 + | putative lipoprotein TERM 855 809330 - 809346 + G 82 -12.3 -3.66883 | CCAGATGCGGCGCGG CCCCAAC GTG GTTGGGG TTTACGGTCTGTTGC TM1040_0753 809184 - 810221 + | NADH dehydrogenase subunit H TM1040_0754 810223 - 810717 + | NADH dehydrogenase subunit I TERM 856 810928 - 810904 - g 80 -9.9 -4.13767 | overlap 810885 810874 GGCTTGATGCCAAAA CCCGCCTGC TGCTGAC GCTGGCGGG ATTGACCATGCAGGG TM1040_0755 810750 - 811124 + | carboxymuconolactone decarboxylase TM1040_0756 811121 - 811723 + | NADH dehydrogenase subunit J TM1040_0757 811738 - 812043 + | NADH dehydrogenase subunit K TM1040_0758 812049 - 814169 + | NADH dehydrogenase subunit L TM1040_0759 814169 - 815734 + | NADH dehydrogenase subunit M TM1040_0760 815747 - 817183 + | NADH dehydrogenase subunit N TERM 857 817180 - 817197 + F 71 -4.9 -4.56597 | gap 1, overlap 817180 817181 GGCCATGCTGGTCAA C-TGATGC GCT GCATCACG TTTTTGCACAAAGGC TERM 858 817203 - 817239 + F 89 -17.5 -3.05046 | gap 1, opp_overlap 817210, overlap 817210 CTGCATCACGTTTTT GCACAAAGGCCCGGTC CAACGC GACCGGGCCTTT-TGC CTTTTGCGAAACTGG TERM 859 817233 - 817210 - f 95 -15.3 -3.85817 | opp_overlap 817203 817210 ACGTTTTTGCACAAA GGCCCGGTC CAACGC GACCGGGCC TTTTGCCTTTTGCGA TERM 860 817210 - 817233 + F 100 -15.3 -4.4267 | opp_overlap 817210, overlap 817203 ACGTTTTTGCACAAA GGCCCGGTC CAACGC GACCGGGCC TTTTGCCTTTTGCGA TM1040_0761 817272 - 818021 + | biotin--acetyl-CoA-carboxylase ligase TM1040_0762 818036 - 818818 + | pantothenate kinase TM1040_0763 818815 - 820482 + | beta-lactamase-like TM1040_0764 821496 - 820756 - | triosephosphate isomerase TERM 861 821610 - 821592 - R 100 -9.5 -5.21709 | opp_overlap 821590 821592 821608, overlap 821608 CGCGACATTAAAAAA GGGCGGC GCAAA GCCACCC TATTTTGGGGTCTCG TM1040_0765 821997 - 821644 - | HesB/YadR/YfhF TM1040_0766 822480 - 822118 - | hypothetical protein TERM 862 822617 - 822650 + r 83 -14.5 -3.22409 | gap 1, opp_overlap 822613, overlap 822614 822605 AATCGGCAAGAGGGC AGGGCGCGCCGGCAGC AAT GCT-CCGCCGCGCCCG TTGGGTTAGTCGTTG TM1040_0767 822928 - 822656 - | hypothetical protein TM1040_0768 823815 - 822928 - | SPFH domain-containing protein/band 7 family protein TM1040_0769 825321 - 823906 - | SSU ribosomal protein S6P modification protein TM1040_0770 825392 - 826522 + | queuine tRNA-ribosyltransferase TERM 863 826566 - 826613 + T 81 -14.4 -3.15999 | gap 1, opp_overlap 826570, overlap 826571 ACACATTCTGTTTCA TATATCGCATCACCACCCGCA AAAGAGG TCCGGGTGGTGATGCG-TGTA TTAGCTCTGTCGGAA TERM 864 826610 - 826570 - T 82 -15.5 -2.87211 | opp_overlap 826566 826571 ATTCTGTTTCATATA TCGCATCACCACCCGCA AAAGAGG TCCGGGTGGTGATGCGT GTATTAGCTCTGTCG TERM 865 826571 - 826609 + T 95 -19 -3.12856 | opp_overlap 826570, overlap 826566 TTCTGTTTCATATAT CGCATCACCACCCGCA AAAGAGG TCCGGGTGGTGATGCG TGTATTAGCTCTGTC TM1040_0771 827053 - 826781 - | hypothetical protein TM1040_0772 827559 - 827050 - | hypothetical protein TM1040_0773 827885 - 828559 + | NADH:flavin oxidoreductase/NADH oxidase TM1040_0774 828617 - 828880 + | Oye family NADH-dependent flavin oxidoreductase TERM 866 831425 - 831411 - g 75 -2.1 -4.95876 | overlap 831414 AAGGAGAACGAAAAA GACCT GCCCG AGATC CCGGACAACGTGAAA TM1040_0775 829194 - 831602 + | Lon-A peptidase TERM 867 831632 - 831653 + T 100 -15.1 -5.24129 | opp_overlap 831632 CCGATATTGATTGAA GGCGTCCCG GTAT CGGGGCGCC TTTTTTGTAGAAGAA TERM 868 831653 - 831632 - T 75 -12.9 -3.09015 | opp_overlap 831632 CCGATATTGATTGAA GGCGTCCCG GTAT CGGGGCGCC TTTTTTGTAGAAGAA TERM 869 831685 - 831669 - T 88 -13.7 -3.78934 | opp_overlap 831682 TTTTTTGTAGAAGAA GCGAGGC TCT GCCTCGC GCTCCGGGATATTGG TM1040_0776 833177 - 832173 - | phage integrase TM1040_0777 833819 - 833487 - | hypothetical protein TM1040_0778 834868 - 833924 - | hypothetical protein TM1040_0779 835524 - 834865 - | hypothetical protein TM1040_0780 836443 - 835670 - | hypothetical protein TM1040_0781 836770 - 836465 - | hypothetical protein TM1040_0782 837342 - 836839 - | hypothetical protein TM1040_0783 837950 - 837342 - | exonuclease TM1040_0784 838672 - 837950 - | ERF TERM 870 838520 - 838508 - G 71 -6.2 -4.37534 | opp_overlap 838508 AAAGGCAGAGGAAAA CGCG GCCTT CGCG TTCTGCGCGTCGTGG TM1040_0785 839026 - 838781 - | hypothetical protein TM1040_0786 839599 - 839240 - | hypothetical protein TERM 871 839549 - 839534 - G 78 -4.6 -4.86621 | overlap 839539 ACGCTCAACGAAAAA CGCAAC CTGT GCCGCG CACTCGATGTCGTCT TERM 872 839720 - 839703 - R 72 -2.6 -4.8622 | overlap 839704 CCCGTCAAGGAAAAA GGGGGA AAATAA TCCCCA TTCAACTTCCGACCT TERM 873 839877 - 839850 - R 78 -12 -3.53224 | opp_overlap 839856, overlap 839856 CACCGTGCGCGCAAA GAAAAACCCCGC CGGA GCGGGGTTCTAC AATCGGCAGAAGCAC TERM 874 839871 - 839856 - R 100 -11.8 -5.27335 | opp_overlap 839856, overlap 839850 GCGCGCAAAGAAAAA CCCCGC CGGA GCGGGG TTCTACAATCGGCAG TERM 875 839856 - 839871 + r 77 -11.8 -3.32844 | opp_overlap 839850 839856 GCGCGCAAAGAAAAA CCCCGC CGGA GCGGGG TTCTACAATCGGCAG TM1040_0787 840665 - 839907 - | hypothetical protein TM1040_0788 841195 - 840662 - | hypothetical protein TERM 876 841181 - 841165 - G 73 -5.1 -4.58395 | TTGAGGTTTGAAAAA TTCGATC CGC GAGCGAA TACTGGATGGGCAAA TM1040_0789 841935 - 841219 - | putative phage repressor TERM 877 841718 - 841740 + g 78 -2.7 -5.06451 | TCCTCGGCGTTGGTC GTTTGGC TTTTCCCTT GCCGAAC TTTTTTGAGCTGCTC TM1040_0790 842213 - 842701 + | hypothetical protein TERM 878 843034 - 842993 - g 82 -14.5 -3.22223 | gap 1, overlap 842981 CAAGCGCAGCAGGAA GCCGAGGCGCGCAA-GATTG CCG CAATCGCCGCGCACATCGGC CACAACGGCGGCCCG TM1040_0791 842939 - 843241 + | hypothetical protein TM1040_0792 843244 - 843765 + | hypothetical protein TM1040_0793 843762 - 844118 + | endodeoxyribonuclease RusA TERM 879 844747 - 844702 - g 100 -13.4 -4.15044 | overlap 844725 844726 CGCTGGCGGAAGAAA GTCTCGAC-GCGGTTGGCGGCA AACG TGGCGC-AACCGCTGTCGCGAC GTCGCCCCAAAATTC TM1040_0794 844130 - 844861 + | hypothetical protein TM1040_0795 844851 - 845414 + | hypothetical protein TM1040_0796 845629 - 846108 + | single-strand binding protein TERM 880 846169 - 846137 - g 74 -6.2 -4.56775 | gap 1, opp_overlap 846159 846161 846167, overlap 846138 ACGCCCGCTGAAAAA CCG-CATGCCCCCAG AGTT CTGGGAGCGCGTCGA GGTCGCCCTCGTTGT TM1040_0797 846108 - 846362 + | hypothetical protein TM1040_0798 846385 - 846966 + | hypothetical protein TM1040_0799 847725 - 847447 - | hypothetical protein TERM 881 847695 - 847681 - G 70 -4.2 -4.46581 | overlap 847689 CAAAAGCGCACAAAA GTGAAC ATC GCCCAC CGGCAGGATACCGGA TERM 882 847791 - 847812 + G 82 -10.9 -3.90588 | gap 1 GGAAGTCACACATGG CGCTCACTGC AAA GCAG-GAGCG TTTCGTTGCGGAATA TERM 883 847943 - 847919 - g 80 -3.6 -5.11033 | gap 1, overlap 847926 GAGAACCTGAAAAAA CCTGAAATCGC CAAA GCGAT-CCAAG AGGCCAATTCGAAGC TM1040_0800 847787 - 848365 + | terminase small subunit TM1040_0801 848343 - 849593 + | hypothetical protein TM1040_0802 849590 - 850969 + | hypothetical protein TM1040_0803 850956 - 852005 + | phage putative head morphogenesis protein, SPP1 gp7 TERM 884 852051 - 852022 - f 72 -9.9 -3.58905 | overlap 852023 ACTGGTGACAGACAA GCCGCAGAAGCCC AAAC GGGCCTATGCGGG CGAGCCCATTGAGTG TERM 885 852050 - 852023 - f 76 -13.4 -2.75022 | overlap 852022 CTGGTGACAGACAAG CCGCAGAAGCCC AAAC GGGCCTATGCGG GCGAGCCCATTGAGT TERM 886 852103 - 852128 + F 77 -11.9 -3.28712 | gap 1, opp_overlap 852101 TCTGATTGAGACATT TTCGCCGCGCCT CAA AGGCG-GGCGGA TTGTGAAGGGCAAGG TERM 887 852471 - 852459 - g 71 -6.9 -4.18506 | overlap 852470 CGAGCTGGAAAAGAA GGCGC AAG GCACC GGCAAGGCCGCCGAG TM1040_0804 852235 - 852918 + | hypothetical protein TM1040_0805 852931 - 853899 + | hypothetical protein TERM 888 853914 - 853934 + F 95 -12.5 -4.56597 | opp_overlap 853901 AAGGCGGCTTTTTGA GGGGCTGGG AAA TCCGGCCCC TTTTTCAAGCCACCA TM1040_0806 853963 - 854214 + | hypothetical protein TM1040_0807 854216 - 854683 + | hypothetical protein TM1040_0808 854680 - 855129 + | hypothetical protein TERM 889 855280 - 855294 + G 73 -4.2 -4.62069 | CCACTACCGATTACC CGGC ACGCATG GCCG TTTTTGAGATCGGCG TM1040_0809 855126 - 855500 + | hypothetical protein TM1040_0810 855500 - 855901 + | hypothetical protein TM1040_0811 855898 - 856296 + | hypothetical protein TERM 890 856536 - 856547 + F 74 -7.2 -4.19746 | ATCTGAATAGAGAGC CCCG TAAG CGGG TTCTTTTCGCATGGA TM1040_0812 856572 - 857060 + | hypothetical protein TM1040_0813 857163 - 857633 + | hypothetical protein TM1040_0814 857759 - 858004 + | hypothetical protein TM1040_0815 858372 - 858001 - | XRE family transcriptional regulator TERM 891 858119 - 858174 + g 78 -13.8 -3.12847 | gap 1 TTGAGGACTTCGGAC GCGCGGGGGCGCGACCCTAGCAGCGCT GCC AGATCTGCCTGGGT-GCGCCCCGTCGC TTCCATGTGCGCCTT TM1040_0816 858688 - 858386 - | hypothetical protein TERM 892 858776 - 858797 + r 71 -11.5 -3.14344 | opp_overlap 858773, overlap 858783 ATGGGAAGTCAATCG GCTCGGCCT CAAG GGGCCGGGC TTACTGAGCGCGCTC TM1040_0817 859124 - 858798 - | hypothetical protein TERM 893 859028 - 859063 + g 77 -7.6 -4.29929 | gap 1, overlap 859035 CTTCCATCATGCTCC GGCAGAGCGACAGCTGA TAA TCAG-TGTCGTGCTTCC TTTCTTCCATTTGGT TM1040_0818 859564 - 859121 - | hypothetical protein TM1040_0819 859581 - 863936 + | tape measure domain-containing protein TERM 894 864791 - 864802 + G 74 -5.8 -4.45517 | overlap 864800 AAGGCCAATGAGTTT TCCG TCTA CGGA TTTTATCAGTCCTTT TM1040_0820 863936 - 864880 + | hypothetical protein TERM 895 866216 - 866186 - g 74 -3.2 -4.8667 | opp_overlap 866177, overlap 866187 866190 CAGATGGTACAAAAA TGTACGTTGCTGGT GAC ACCAACAACACCCT ATTCCAGTATTCCAC TM1040_0821 864877 - 866394 + | hypothetical protein TM1040_0822 866391 - 866936 + | hypothetical protein TERM 896 866989 - 867015 + GF 100 -16.6 -4.06678 | TCTGAAATCGCATGG GAGATCGGGGCC AAG GGCTCCGGTCTC TTTCTCTACGTGCCT TERM 897 867155 - 867174 + GF 73 -8.6 -4.07885 | gap 1 GGCTCGGCTGGGGGC GGGT-CAGC GCG GCTGCACCC TTTTCCGAAGCGCTG TM1040_0823 866908 - 867261 + | hypothetical protein TM1040_0824 867268 - 867564 + | hypothetical protein TM1040_0825 867561 - 867995 + | hypothetical protein TM1040_0826 867997 - 868806 + | hypothetical protein TM1040_0827 868803 - 869201 + | hypothetical protein TERM 898 869246 - 869227 - T 85 -12.1 -4.00934 | opp_overlap 869227 ACCTCAAAGACGAAA GCCCCGG TGACTG CCGGGGC TTTTTCGTTTCTTGA TERM 899 869227 - 869246 + T 100 -12.8 -5.09521 | opp_overlap 869227 ACCTCAAAGACGAAA GCCCCGGT GACT GCCGGGGC TTTTTCGTTTCTTGA TM1040_0828 869987 - 869373 - | two component LuxR family transcriptional regulator TM1040_0829 870582 - 870157 - | response regulator receiver protein TM1040_0830 871763 - 870579 - | PAS/PAC sensor signal transduction histidine kinase TERM 900 872647 - 872617 - R 80 -14.8 -2.65538 | opp_overlap 872618 AAGAAGGTCAGAGTA GGAGCGCTTCGTTA CGC CAACGAAGCGCTCT TAGGTTCCGTGAACT TERM 901 872618 - 872646 + r 89 -17.6 -3.19192 | opp_overlap 872617 AGAAGGTCAGAGTAG GAGCGCTTCGTT ACGCC AACGAAGCGCTC TTAGGTTCCGTGAAC TERM 902 872725 - 872713 - R 86 -6.2 -5.06414 | opp_overlap 872714, overlap 872714 TTTTCCGAATAAAAA GCGC TCCTT GCGC GAGAATTCAATAGCT TM1040_0831 873844 - 872933 - | LysR family transcriptional regulator TM1040_0832 873956 - 875506 + | NADH/ubiquinone/plastoquinone (complex I) TM1040_0833 875521 - 877938 + | hypothetical protein TERM 903 877957 - 877995 + T 90 -16.8 -3.24021 | opp_overlap 877962, overlap 877962 ATTGGAAGTGATAGG TAAAAGCCCCGAACGTCG CTC TGACGCTCGGGGCTTTTC TTACCTGTTTGCGGG TERM 904 877990 - 877962 - T 100 -18.2 -4.24606 | opp_overlap 877957 877962 AAGTGATAGGTAAAA GCCCCGAACGTC GCTCT GACGCTCGGGGC TTTTCTTACCTGTTT TERM 905 877962 - 877990 + T 100 -16.7 -4.7268 | opp_overlap 877962, overlap 877957 AAGTGATAGGTAAAA GCCCCGAACGTCG CTC TGACGCTCGGGGC TTTTCTTACCTGTTT TM1040_0834 879683 - 878016 - | amidohydrolase 3 TERM 906 879593 - 879548 - G 74 -11.1 -3.53811 | gap 1, overlap 879550 879587 TGGAGGGCGCGGAAA GA-GCGCGGATTTCGGCGGTGG TGC CCACCGCAGAGATCAGCCCGTC GGTGATGGCGAGCGC TERM 907 879590 - 879550 - G 81 -13.9 -3.34715 | overlap 879548 879587 GAGGGCGCGGAAAGA GCGCGGATTTCGGCGGTGG TGC CCACCGCAGAGATCAGCCC GTCGGTGATGGCGAG TM1040_0835 880786 - 879761 - | extracellular solute-binding protein TM1040_0836 881654 - 880854 - | binding-protein-dependent transport systems inner membrane component TM1040_0837 882579 - 881647 - | binding-protein-dependent transport systems inner membrane component TM1040_0838 883696 - 882584 - | spermidine/putrescine ABC transporter ATP-binding subunit TERM 908 883108 - 883126 + g 71 -9.6 -3.75629 | AGACAAAAGTGATGC CGGTTTCA TGC TGAAGCCG TTTGAGTTCGAGCTG TERM 909 883520 - 883530 + g 74 -5.4 -4.56597 | CCCGGCAATCATGCG CAAC AGC GTTG TTTTTCCGCAGCCGG TERM 910 884212 - 884228 + H 71 -9.3 -3.72893 | opp_overlap 884213, overlap 884213 TGTTCAGTCACATCA AGGCGCG TCG CGCGCCG TTTGGTCAAAAAGTG TERM 911 884227 - 884213 - H 78 -12.8 -3.2794 | opp_overlap 884213 884212 GTTCAGTCACATCAA GGCGCG TCG CGCGCC GTTTGGTCAAAAAGT TERM 912 884213 - 884227 + H 74 -12.8 -2.83522 | opp_overlap 884213, overlap 884212 GTTCAGTCACATCAA GGCGCG TCG CGCGCC GTTTGGTCAAAAAGT TM1040_0839 884254 - 887037 + | methyl-accepting chemotaxis sensory transducer TERM 913 887054 - 887040 - T 71 -7.8 -4.18762 | AACCGGGACGTAAAA GACCCT TTG AGGGCC TGACTCGGGTTGCGC TM1040_0840 887457 - 887215 - | hypothetical protein TERM 914 888213 - 888230 + G 75 -7.7 -4.15061 | gap 1 GGGGCCTTGGTCGTA CCG-CGCA ATC TGCGGCGG TTTGTCTGTCGCTTG TM1040_0841 887959 - 888321 + | hypothetical protein TM1040_0842 888359 - 889966 + | peptidase C1A, papain TM1040_0843 889986 - 894845 + | OmpA/MotB TERM 915 894889 - 894854 - T 78 -14.7 -2.57988 | opp_overlap 894850, overlap 894850 AAATTGATGAAGCCA GATCTCTCCCGGTGC GCCTCT GCGCCGGGGGAGATC AACAGCCTGTTTGCG TM1040_0844 895775 - 894888 - | LysR family transcriptional regulator TERM 916 895458 - 895439 - G 71 -9.2 -3.76413 | overlap 895432 CCTGAAAACGCGAAA GCCGCGGC GCAA GCCACAGC ATGTTGAGCGAACTC TERM 917 896596 - 896569 - g 88 -13.4 -3.64703 | CGGCTTTGAGGGAAA GCGGGCCACCTC CGTC GAGGTGGTCCAC AAGGGGCGCGCGCAG TERM 918 896898 - 896914 + G 83 -5.1 -5.09225 | CGCTCGCGCTCTCGG TCAACCA ATG TGGTGGA TTTTTTCGCTCGGAT TM1040_0845 895892 - 897502 + | glucose-methanol-choline oxidoreductase TERM 919 898589 - 898618 + G 70 -10 -3.53811 | gap 1 ATGGCCAGGCGCTTG TCACCGACGCCCC CGGTT GGGGCGT-GGAGA TTTGCCCCGAGTGGC TM1040_0846 897499 - 898674 + | mandelate racemase/muconate lactonizing-like protein TM1040_0847 898671 - 900155 + | betaine-aldehyde dehydrogenase TERM 920 900157 - 900201 + T 83 -11.9 -3.78409 | opp_overlap 900157 900156, overlap 900186 CCCTCGCGGTATAAC GCCCCTCTGCGCCCCGCTCGC CAT GTGGGTGGGGCGCAACGCCGC TTTGAGTTCCATTAC TERM 921 900377 - 900416 + T 75 -11.4 -3.53091 | gap 1 TCGCATGCCTCCCGC GCCTAT-TTCGGTGCGGGC GAG GCCAGCACCGGGGAGAGGC TTTCGACAAAGACAT TM1040_0848 901287 - 900379 - | LysR family transcriptional regulator TERM 922 902075 - 902065 - g 79 -8.2 -4.45544 | GGGCACCAAGGAAAA CGGC TTT GCCG GGTTCGACACCGAGT TM1040_0849 901433 - 902737 + | extracellular solute-binding protein TERM 923 902746 - 902790 + F 100 -22.9 -4.68446 | opp_overlap 902747, overlap 902747 GAAGTAATCGCCCAA AGGCTCTACCCGGTCTCGCAG CAT TTGCGGGGCCGGGTAGGGCCG TTTTCTATCCTTTTT TERM 924 902789 - 902747 - f 100 -19.1 -3.58305 | opp_overlap 902746 902747 AAGTAATCGCCCAAA GGCTCTACCCGGTCTCGCA GCATT TGCGGGGCCGGGTAGGGCC GTTTTCTATCCTTTT TERM 925 902747 - 902789 + F 100 -26.4 -3.38627 | opp_overlap 902747, overlap 902746 AAGTAATCGCCCAAA GGCTCTACCCGGTCTCGCAG CAT TTGCGGGGCCGGGTAGGGCC GTTTTCTATCCTTTT TERM 926 903146 - 903198 + G 76 -10.3 -3.78233 | overlap 903131 903147 CGGCGCGACGGCCTA TCGCACACTCCTGATCTGGCCCTAC GCC GTGGCGCCGGTTCTGGCGGGTGCGC TTTGGGTGTTCATGT TERM 927 903147 - 903197 + G 75 -13.8 -2.86217 | overlap 903131 903146 GGCGCGACGGCCTAT CGCACACTCCTGATCTGGCCCTAC GCC GTGGCGCCGGTTCTGGCGGGTGCG CTTTGGGTGTTCATG TM1040_0850 902829 - 903710 + | binding-protein-dependent transport systems inner membrane component TM1040_0851 903710 - 904561 + | binding-protein-dependent transport systems inner membrane component TM1040_0852 904570 - 905625 + | glycerol-3-phosphate transporter ATP-binding subunit TERM 928 905651 - 905701 + G 88 -19.8 -2.78384 | gap 2 CCAGGTCGACGCCTA TCGCG-GCGGCGCGG-GGCTGATC CGTGT GATCGGCCACCGCGGCGCGCGCGG TGTCATGCCCGAAAA TM1040_0853 905622 - 906569 + | glycerophosphoryl diester phosphodiesterase TERM 929 907219 - 907256 + G 93 -7.7 -5.00616 | gap 1 AGCCGGGCCTGATCG CGCAGGA-GCTGACCG AGCGCAC CGGTCAGCCTGCAGCG TTTTTTGGCAAACCC TM1040_0854 906573 - 907493 + | haloacid dehalogenase-like hydrolase TERM 930 909026 - 909016 - g 80 -3.2 -5.06816 | ACCGCCGAACAAAAA CTGC AGA GCAA ACACCTGTCGCGCCT TM1040_0855 907552 - 909198 + | Na+/Pi-cotransporter TM1040_0856 909271 - 909846 + | phosphoglycerate mutase TM1040_0857 910333 - 910004 - | hypothetical protein TM1040_0858 910897 - 911307 + | thioesterase superfamily protein TERM 931 911345 - 911310 - T 100 -16.2 -4.11216 | gap 1, opp_overlap 911309 911303 911314 911317, overlap 911315 911317 GCGCGAGGCGTAAAA CGACACAGCCCCCGCAG AGG CTGCGAGGGCTG-GTCT GATCGTTTCGGGGAG TERM 932 911314 - 911342 + T 80 -14.5 -2.8934 | opp_overlap 911310 911315 911317, overlap 911309 911303 911317 GAGGCGTAAAACGAC ACAGCCCCCGCAG AGG CTGCGAGGGCTGG TCTGATCGTTTCGGG TERM 933 911341 - 911315 - T 100 -20.2 -3.10091 | opp_overlap 911314 911309 911303 911317, overlap 911310 911317 AGGCGTAAAACGACA CAGCCCCCGCAG AGG CTGCGAGGGCTG GTCTGATCGTTTCGG TERM 934 911317 - 911339 + T 80 -14.8 -2.69202 | opp_overlap 911315 911310 911317, overlap 911314 911309 911303 GCGTAAAACGACACA GCCCCCGCAG AGG CTGCGAGGGC TGGTCTGATCGTTTC TERM 935 911339 - 911317 - T 89 -17 -3.10533 | opp_overlap 911317 911314 911309 911303, overlap 911315 911310 GCGTAAAACGACACA GCCCCCGCAG AGG CTGCGAGGGC TGGTCTGATCGTTTC TM1040_0859 912782 - 911391 - | hypothetical protein TERM 936 911887 - 911903 + g 78 -7.3 -4.65933 | overlap 911889 GGACGCGCCCATTGC TGCTCCA GGG TGGAGTA TTTCTTTTCGCCATG TERM 937 912369 - 912327 - G 78 -2.5 -5.06414 | gap 2, opp_overlap 912358 GCCCTCGAAGAAAAA GGTGATGC-GGCAGGGCA-GG GTG CCATGCACCGCCTGCCACGCC CGGCAGGCTTCTACA TM1040_0860 913262 - 914491 + | 5-aminolevulinate synthase TERM 938 914913 - 914927 + G 70 -3.4 -4.65895 | overlap 914899 GGCCTTTGGTGCCTT CTGCGC CGA GAGCGG TTTTTCCGTGGCCCA TM1040_0861 914620 - 915837 + | hypothetical protein TERM 939 915914 - 915883 - f 70 -10.2 -3.31461 | gap 2, opp_overlap 915876 CATGGATTCGCAGAA CGCCCCGGACAGCC ATTGCA GGCT--CCGGGGCG TCGGCCTATCTAAGG TERM 940 917069 - 917041 - g 93 -6.5 -5.252 | overlap 917042 GAGGTCGAGAAAAAA GCCGCCGCTCTCG ACG CGCAAGCGGCTGA GGACATGAAAGCGGC TERM 941 917068 - 917042 - g 76 -10 -3.74397 | overlap 917041 AGGTCGAGAAAAAAG CCGCCGCTCTCG ACG CGCAAGCGGCTG AGGACATGAAAGCGG ispG 915958 - 917091 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TM1040_0863 917932 - 917168 - | DSBA oxidoreductase TM1040_0864 919350 - 917929 - | peptidase M48, Ste24p TERM 942 918168 - 918178 + g 75 -8.2 -4.23723 | opp_overlap 918168 918164 CATTGCGAAAATCAA GGCC TCG GGCC TTTTCCATCGTCTTG TERM 943 919054 - 919036 - G 73 -8.8 -3.89524 | ACCGTAGTTGATAAA GATCGCCC GGT GGTCGATC ACGAAGGCATTGAAA TERM 944 919256 - 919219 - G 70 -9.8 -3.54424 | gap 1, overlap 919192 CGCGATCGGCGCAAA GGCCAGCAC-GGCGGCA AGACA TGCTGCCAGCACCGGCC CACGGCCGCACCCTC TERM 945 919907 - 919953 + G 78 -5.1 -4.86731 | gap 2, opp_overlap 919907, overlap 919909 ACAATGCTCGACAAA CCGGCGCTCTCGGCGCTGATG GAGGCGG CG-CAG-GCCGAGGGCGCGAG TTTTATTTCCGACGA TERM 946 920400 - 920378 - g 73 -4.7 -4.60924 | opp_overlap 920378, overlap 920379 GAAATTCTCGAAAAA GCCGGGGTG GCGGT CACACCGGG GCTCGATTTTGACCC TM1040_0865 919373 - 920518 + | aminotransferase TERM 947 920507 - 920527 + F 73 -5.3 -4.57837 | AGGGCCTTTATGGAG GCGCGGG GCTGATG CGCGCGC TTTTTGCAAAGCTCT TERM 948 921251 - 921273 + G 73 -9.9 -3.57507 | overlap 921248 GCCGCATTGCCATGG CGCATCAGC AGGGG GCTGATGTG TTCATTTCGCTTCAT TERM 949 921551 - 921570 + G 71 -7 -4.21194 | overlap 921552 GGCCGGTCAATCGCC GCCCGCTG CGCT CGGCGGGG TTTTCGGTGCTGAAA TM1040_0866 920518 - 921756 + | N-acetylmuramoyl-L-alanine amidase TM1040_0867 922143 - 924650 + | penicillin-binding protein 1A TERM 950 924666 - 924703 + F 95 -17.8 -3.44051 | gap 1 CACAGTCTTACATTT GAG-GCGGGCAGGCGGG TGATC CTCGCTTGCCCGCGCTC TTGTAGTGGTCCCGG TERM 951 925120 - 925085 - g 100 -9 -4.88407 | gap 1, opp_overlap 925097, overlap 925086 GCACTGAAGGAAAAA GCCGCCCAGAAAGAGCT TGA AGCGCTT-CTGGACGGT GAAACCGACCCCAAT TERM 952 925119 - 925086 - g 79 -12.5 -3.52321 | gap 1, opp_overlap 925097, overlap 925085 CACTGAAGGAAAAAG CCGCCCAGAAAGAGCT TGA AGCGCTT-CTGGACGG TGAAACCGACCCCAA TM1040_0868 924764 - 925888 + | peptide chain release factor 2 TERM 953 925956 - 925933 - T 71 -12.4 -2.77013 | opp_overlap 925932 925934, overlap 925932 CATTCGTTGAACAAG GCCCCTGACC GTTT GGTCAGGGGT TTTTTGTCTGGGATT TERM 954 925934 - 925955 + T 100 -15.9 -5.37043 | opp_overlap 925933 925932, overlap 925932 ATTCGTTGAACAAGG CCCCTGACC GTTT GGTCAGGGG TTTTTTGTCTGGGAT TM1040_0869 927346 - 926009 - | major facilitator transporter TERM 955 926370 - 926350 - G 74 -3.1 -4.74453 | overlap 926351 926352 CAAGACAGGCAAAAA GCGCGGCCA GCA CGACCGCAG AGCGCCGCCTGAACA TERM 956 927309 - 927340 + g 76 -10.8 -3.76224 | opp_overlap 927275 927309 GTCATCGCCACAGCA TCCGCCGTTGCACC GTCG GGCGCAATGGCGCA TTTCATGCGTGGGCG TERM 957 927536 - 927516 - g 71 -6.7 -4.1721 | overlap 927519 AGCGACATTCTAAAA GACCTCGCC AGA GGCGCGCTC ACGGTCGAGGCCCTG TERM 958 928131 - 928149 + G 71 -8.8 -3.83568 | overlap 928132 GGACCGATGGCGCGC ACGCCAGA GGA TCTGGCGC TTCTTCTGGATGTGA TERM 959 928132 - 928148 + G 70 -12.3 -2.89659 | overlap 928131 GACCGATGGCGCGCA CGCCAGA GGA TCTGGCG CTTCTTCTGGATGTG TM1040_0870 927480 - 928859 + | amidase TM1040_0871 928914 - 929723 + | hypothetical protein TM1040_0872 930516 - 929716 - | XRE family transcriptional regulator TM1040_0873 930711 - 931130 + | hypothetical protein TERM 960 931269 - 931286 + T 81 -12.7 -3.67976 | opp_overlap 931269 CCCAAAGACAAAAAA GCGCACC CGCA GGTGCGC TTTGGCGTTACTGGC TERM 961 931286 - 931269 - T 100 -12.7 -5.56264 | opp_overlap 931269 CCCAAAGACAAAAAA GCGCACC CGCA GGTGCGC TTTGGCGTTACTGGC ilvH 931877 - 931317 - | acetolactate synthase 3 regulatory subunit TERM 962 931485 - 931503 + g 84 -10.2 -4.19238 | opp_overlap 931478 931477 931475 GAAAATATCCGCAAG GCGCATCG CCT CGACGCGC TTTTCGCCTTCGCCG TERM 963 931838 - 931853 + g 84 -3.2 -5.24989 | overlap 931839 GTAGGTTATAGGCGG AGTGCT TGGT AGCACC TTTTTTGATGTGTAG TM1040_0875 933694 - 931943 - | acetolactate synthase 3 catalytic subunit TERM 964 933790 - 933766 - R 95 -9.3 -5.26316 | opp_overlap 933788 GTATCGCATAAAAAA GCCCCCGAT TTTGAGG ATCGGAGGC GCATGGGTTCGATTA TERM 965 933923 - 933936 + r 73 -5.2 -4.60889 | opp_overlap 933932, overlap 933920 GGCCGGGAGGGTCAA CCGC AAAAAG GCGG TTTTTGCGCCTGGTT TERM 966 933946 - 933932 - R 71 -4.2 -4.66833 | opp_overlap 933923 933920 GGTCAACCGCAAAAA GGCG GTTTTTG CGCC TGGTTTTGAATTTAT TM1040_0876 934995 - 934294 - | two component LuxR family transcriptional regulator TM1040_0877 936440 - 935016 - | periplasmic sensor signal transduction histidine kinase TERM 967 935646 - 935672 + g 71 -9.3 -3.72324 | opp_overlap 935644 GCTGATCGAATCATG GAGCTCGCGCG CCACC CGCCCGCGCTC TTCTTCCTGGGCATC TERM 968 936776 - 936736 - H 74 -3.3 -4.90266 | opp_overlap 936739, overlap 936738 936739 936765 GGGAGGAACCAAAAA CATGGATCGCAGATCCTTT CTG AAAACATCCGCAATCGGTG GCTCCGCAGCCGCCG TM1040_0878 936737 - 937822 + | twin-arginine translocation pathway signal TERM 969 937845 - 937874 + F 87 -12.2 -4.13945 | gap 1, overlap 937846 CCTCTCGCTTGAATT G-GATCCCCCGCG CCAGA TGCGGGGGATCTC TTTTGCACTCGCGGT TERM 970 937846 - 937872 + F 91 -15.9 -3.6692 | overlap 937845 CTCTCGCTTGAATTG GATCCCCCGCG CCAGA TGCGGGGGATC TCTTTTGCACTCGCG TM1040_0879 937960 - 938907 + | TRAP-type mannitol/chloroaromatic compound transport system small permease component-like TM1040_0880 938924 - 941278 + | TRAP C4-dicarboxylate transport system permease DctM subunit TERM 971 941334 - 941301 - T 86 -14.7 -3.6543 | gap 1, opp_overlap 941305 941306, overlap 941306 GAAGGTTCCAAAAGA GAAAAGGCCCCGC-CA TTG TGTGCGGGGCCTTTTT TAATTGTGCCGAGAG TERM 972 941329 - 941306 - T 100 -14.6 -4.89567 | gap 1, opp_overlap 941305 941306, overlap 941301 TTCCAAAAGAGAAAA GGCCCCGC-CA TTG TGTGCGGGGCC TTTTTTAATTGTGCC TERM 973 941306 - 941329 + T 100 -14.6 -5.32944 | gap 1, opp_overlap 941306 941301, overlap 941305 TTCCAAAAGAGAAAA GGCCCCGC-CA TTG TGTGCGGGGCC TTTTTTAATTGTGCC TERM 974 941367 - 941355 - T 81 -10.5 -4.12532 | opp_overlap 941355 GTGCCGAGAGAGAAA GGGGC GCT GCCCC TCTTGGCCTGCAGCC TM1040_0881 941875 - 941492 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 975 941851 - 941885 + g 91 -5.6 -5.40072 | opp_overlap 941851 AATCGGGCACCACAA GGGAGACGGCGTGGAG AAA TTGCACGCGGTTTACC TTTTTTTGGGGGAGG TM1040_0882 942705 - 941881 - | arginyl-tRNA-protein transferase TERM 976 942761 - 942739 - R 78 -12.7 -3.25088 | TCGTAAACGTAGGAA GGACCGTCC CTCTT GGACGGCCC GGCATCAGTGTCGTT TM1040_0883 943310 - 942879 - | RDD domain-containing protein TM1040_0884 943834 - 943379 - | hypothetical protein TERM 977 944033 - 944023 - H 89 -8.2 -4.89521 | overlap 944031 ATAGCGGAAAGAAAA CGCC AAA GGCG TCAACCGATTTTGAC TERM 978 944264 - 944308 + H 73 -12.2 -2.90075 | gap 1, opp_overlap 944252 944264 944265 AATCGCCGTAAACAA TTGTTTCAC-GGACGCTCACG AATT CGTGAGCGTCCAGAGCGACAG TCTGATTAAGGCCCC TERM 979 944307 - 944265 - H 70 -11.3 -2.94411 | gap 1, opp_overlap 944264, overlap 944252 944264 ATCGCCGTAAACAAT TGTTTCAC-GGACGCTCACG AATT CGTGAGCGTCCAGAGCGACA GTCTGATTAAGGCCC TERM 980 945428 - 945457 + G 74 -5.5 -4.56597 | opp_overlap 945428 GGACACGATATGAAA CTCGGGCGCGGGG GCAT CCGCGAGATCGAG TTTTTCACCCAGACC TERM 981 945719 - 945774 + G 71 -6 -4.41348 | gap 1, overlap 945763 GATGTCGAGGCTGAA TCCTTTGTGAGCGGGTTGCGCGACCGG CTG TCGGAGGTGCATCGC-CTCACCGAGGA TTTCTTTGCCCCGGG TM1040_0885 944459 - 947317 + | glutamate-ammonia-ligase adenylyltransferase TM1040_0886 947364 - 947594 + | hypothetical protein TM1040_0887 948037 - 949254 + | SAM-dependent methyltransferase TERM 982 949321 - 949345 + G 77 -7.7 -4.39426 | overlap 949338 TGATGCGCGAGATGC TGCTGGGCGCG GCG CGCGCGGGGCA TTTTGTGCCGCTCTG TERM 983 949626 - 949592 - g 76 -10.6 -3.75629 | overlap 949595 949623 CACCGTCAACGCAAA GGATTTCCCCCGCCAG ACG CTGGCGGAGGAAGGGC TGACGCGCAGCGCGC TERM 984 949623 - 949595 - g 79 -15.3 -2.9732 | overlap 949592 CGTCAACGCAAAGGA TTTCCCCCGCCAG ACG CTGGCGGAGGAAG GGCTGACGCGCAGCG TM1040_0888 949266 - 949805 + | hypothetical protein TERM 985 949878 - 949851 - T 85 -11.9 -3.90112 | opp_overlap 949869, overlap 949852 GCGGGCGGAAGCAAA GCGCCCGCCCA TGGGGG CGGTCGGGCGC TGCCCGGCCTGTCGT TERM 986 949873 - 949852 - T 75 -12.9 -2.93853 | opp_overlap 949869, overlap 949851 CGGGCGGAAGCAAAG CGCCCGCCC ATGG GGGCGGTCG GGCGCTGCCCGGCCT TERM 987 949869 - 949887 + T 76 -13.8 -2.78384 | opp_overlap 949852 949851 CCCGCCCATGGGGGC GGTCGGGC GCT GCCCGGCC TGTCGTCCGGGCAAA TM1040_0889 950897 - 949911 - | luciferase-like TERM 988 950245 - 950262 + g 71 -6.3 -4.43221 | gap 1, opp_overlap 950235, overlap 950213 GCAAAGACGTTGACC GCCAGCAT CGC ATGC-GGC TTTTGTAGCGTCTTT TERM 989 950920 - 950902 - R 70 -5.3 -4.42619 | gap 1, opp_overlap 950902 GAATAGCGCATAAAA CCTTCTCC TTGC GG-GAAGG TTTAGGTAAGGGCTC TM1040_0890 951672 - 950986 - | peptidase M48, Ste24p TM1040_0891 953197 - 952013 - | hypothetical protein TM1040_0892 953396 - 953229 - | hypothetical protein TM1040_0893 954951 - 953503 - | hypothetical protein TERM 990 955060 - 955040 - R 70 -11.1 -2.89564 | TTTTGATGGCAGATA GGGCCGG TGTGCAG CCGGCCC GCATCAGATCATCAT TM1040_0894 955914 - 955075 - | ATPase TERM 991 955238 - 955254 + g 90 -4.3 -5.4505 | overlap 955239 TTCAGCCAGTCGATC ACCTCCG AGG TGGAGGG TTTTTTCTTGAGCCC TERM 992 955328 - 955352 + g 78 -4.9 -4.74215 | overlap 955329 955330 AAGAGGTCGGGTTTG ATGTCGGGGTG ATG CACTTCGACGA TTTTCTTCATCGTCT TM1040_0895 956048 - 956524 + | TraR/DksA family transcriptional regulator TERM 993 956573 - 956550 - f 95 -13.8 -4.08571 | opp_overlap 956550 CCACAAGATTATAAA GCGCCGGGTC TTTT GATCCGGCGC TTTTTTGTTATGAGC TERM 994 956550 - 956573 + F 100 -16 -5.55769 | opp_overlap 956550 CCACAAGATTATAAA GCGCCGGGTC TTTT GATCCGGCGC TTTTTTGTTATGAGC TM1040_0896 956617 - 957786 + | monooxygenase, FAD-binding TERM 995 957937 - 957896 - T 95 -17.1 -3.53012 | opp_overlap 957921, overlap 957900 TGGGCTTTGCCCAAA GCGACCCGCGCCGCGCAGG CACG CCTGCGCGGCGCTTGGCCC AATGGGAGCGCGCGC TERM 996 957933 - 957900 - T 95 -19.5 -2.64155 | opp_overlap 957921, overlap 957896 CTTTGCCCAAAGCGA CCCGCGCCGCGCAGG CACG CCTGCGCGGCGCTTG GCCCAATGGGAGCGC TM1040_0897 958895 - 958089 - | exodeoxyribonuclease III TM1040_0898 959534 - 959238 - | hypothetical protein TERM 997 960030 - 960040 + G 71 -8.2 -4.07568 | TTTGCAGCGGGCCGA GGCG CGA CGCC TTTTGGCGCGGCGCG TM1040_0899 959653 - 960717 + | hypothetical protein TERM 998 960810 - 960822 + G 80 -3.3 -5.04601 | overlap 960796 960810 960812 960813 ATGGCTGGGGGATTT GCTCC GGC GCAGC TTTTTGCTTTGTCGG TERM 999 961697 - 961664 - g 79 -15.9 -2.70932 | gap 1 CGTTCGGCGCAATGA CCGGCGCAGTG-GCGC TTG GCGCACGCGGCGCCGG GTGCAGTCCGGCCGC TM1040_0900 960714 - 961715 + | hypothetical protein TM1040_0901 962232 - 961909 - | HesB/YadR/YfhF TERM 1000 963042 - 963066 + G 73 -9.1 -3.97689 | opp_overlap 963040 963039, overlap 963052 GCTGGATCATAATCG CCGTCGCCACG AGG CGCTGCGGCGG TTCTTTGGGGTTATG TM1040_0902 962323 - 963465 + | deoxyguanosinetriphosphate triphosphohydrolase TERM 1001 963485 - 963519 + F 70 -9.8 -3.41222 | overlap 963483 963486 CGATCTGTGAGCGCG GCCGGGGATGCGAGGC TCT GCCTCGCGCTCCGGGA TATTTGGGGTTAGAA TERM 1002 963486 - 963518 + F 75 -13.3 -2.64412 | overlap 963485 963483 GATCTGTGAGCGCGG CCGGGGATGCGAGGC TCT GCCTCGCGCTCCGGG ATATTTGGGGTTAGA TM1040_0903 963640 - 965382 + | arginyl-tRNA synthetase TERM 1003 965969 - 966003 + G 70 -9.9 -3.53444 | gap 1 CTACAAGCTGATCAT GCGCGATG-TCTCCGG CGTG CCGGTGGTCAGCGCGC TTTCGGGGCCGATGC TM1040_0904 965892 - 966827 + | sporulation related TERM 1004 966879 - 966916 + G 79 -8.5 -4.52143 | opp_overlap 966886, overlap 966874 966871 966881 966886 TGCGTCTCACCGCCG ATGAAAAGGCGCTGTTT CGCG AAGCAGCGCCTTTTGGC TTTATTCTCTTTGCG TERM 1005 966881 - 966914 + G 72 -13.3 -2.57036 | opp_overlap 966886, overlap 966874 966871 966879 966886 CGTCTCACCGCCGAT GAAAAGGCGCTGTTT CGCG AAGCAGCGCCTTTTG GCTTTATTCTCTTTG TERM 1006 966886 - 966909 + G 100 -13.2 -4.43755 | opp_overlap 966886, overlap 966874 966871 966881 966879 CACCGCCGATGAAAA GGCGCTGTTT CGCG AAGCAGCGCC TTTTGGCTTTATTCT TERM 1007 966909 - 966886 - g 89 -11 -4.2558 | opp_overlap 966874 966871 966886 966881 966879 CACCGCCGATGAAAA GGCGCTGTTT CGCG AAGCAGCGCC TTTTGGCTTTATTCT TM1040_0905 966827 - 967888 + | Beta-N-acetylhexosaminidase TERM 1008 968249 - 968296 + G 71 -6.1 -4.42806 | gap 2, overlap 968250 GCGGTTGCAGGCGAT GCGCGATGCGGCCG--CCCGGCT AATG GGCCGGGATCGGCTGGGGCGCGA TTTCTTTGCCCGTGG TM1040_0906 967881 - 968678 + | condensin subunit ScpA TM1040_0907 968678 - 969358 + | condensin subunit ScpB TM1040_0908 969526 - 969846 + | hypothetical protein TM1040_0909 970999 - 969800 - | major facilitator transporter TM1040_0910 971071 - 971610 + | AsnC family transcriptional regulator TM1040_0911 972697 - 971618 - | 2'-deoxycytidine 5'-triphosphate deaminase TERM 1009 972769 - 972787 + r 71 -7.4 -4.07568 | opp_overlap 972765 972772, overlap 972772 ATGCCACAATACGCA GAATGCGC GTT GCGAATTC TTTTGGAAAACCAAC TERM 1010 972854 - 972829 - R 100 -17.6 -4.12532 | opp_overlap 972829 CGGCGGATACACAAA CGCCCGAGCG TTTGAC CGCTCGGGCG TTTTGTTATGGTCGG TERM 1011 972829 - 972854 + r 100 -17.6 -4.81212 | opp_overlap 972829 CGGCGGATACACAAA CGCCCGAGCG TTTGAC CGCTCGGGCG TTTTGTTATGGTCGG TM1040_0912 975563 - 973041 - | MerR family transcriptional regulator TERM 1012 973629 - 973641 + g 76 -6.9 -4.55209 | overlap 973630 GCTGGCCATCTGCGC TGCCG GAT CGGCG TTTGTTTCCTCTATG TERM 1013 974307 - 974325 + g 76 -8.8 -4.13014 | overlap 974302 AGCTGCGCTGTCGGA CGCCGG TGCTTGC CCGGCG TTTTGCGCATCTGCG TERM 1014 974515 - 974555 + g 82 -14.6 -3.25942 | gap 1 CCTGCGGATGTCTGC GGCGTCTGCGCGC-CGCCC ACAT GGGCGCGCGCGTGATCGCC TTCCTGTGGCGCACT TM1040_0913 975925 - 975623 - | integration host factor, alpha subunit TM1040_0914 976984 - 976013 - | 3-oxoacyl-[acyl-carrier-protein] synthase III TERM 1015 976183 - 976194 + g 76 -5.8 -4.64676 | CGACCACCTTGTCCA TGGG CAGG CCCA TTTTCTTGGCGGTGC TERM 1016 976276 - 976309 + g 78 -7.4 -4.62783 | gap 1, opp_overlap 976255, overlap 976275 976276 CGGTGCTGGCACCGG CGCG-CTCCAGAGCC GTATG GGCTGTGGAGGCGAG TTTTTCGACTGCGTG TM1040_0915 978127 - 977000 - | putative glycerol-3-phosphate acyltransferase PlsX TERM 1017 977035 - 977052 + g 74 -12.7 -3.13432 | overlap 977048 CAGAATCGCCGGGTG CGTCCGC GTCT GCGGACG TTGCGTCATCTTGGG rpmF 978375 - 978169 - | 50S ribosomal protein L32 TM1040_0917 979214 - 978666 - | hypothetical protein TERM 1018 979340 - 979328 - g 79 -9.1 -4.1964 | opp_overlap 979329 CCGAAGACCGTAAAA TCCGC AAT GCGGA GCGCGCTTCTCGTTG TM1040_0918 979301 - 979768 + | SmpA/OmlA family lipoprotein TM1040_0919 979926 - 980702 + | ornithine-acyl[acyl carrier protein] N-acyltransferase TERM 1019 980764 - 980737 - f 75 -12.7 -3.21354 | opp_overlap 980741 TGATACATTGACGAA GAGAGCGGCGC GGTTTA GCTCCGCTCTC ATGGCACGTATTCCT TERM 1020 980849 - 980873 + G 89 -15.7 -3.28924 | GACCTCGACCTCGTG GTGCAGCCCGG CGA CCGGGTTGCGC TTGTGGGGCGCAATG TERM 1021 982537 - 982523 - g 72 -2.8 -4.74801 | GAACGTCAGGAAAAA CTCG CTGCTGC CGAG GAAGAATGGCTGACG TM1040_0920 980789 - 982579 + | ABC transporter related TERM 1022 982683 - 982643 - T 100 -33.3 -2.53581 | CAGAGCCCGAAGCGA CCCGCGCCGCGCGCACCCC TGC GGGGCGCGCGCGGCGCGCG GCCCAACCGGATCAA TM1040_0921 983518 - 982763 - | short-chain dehydrogenase/reductase SDR TM1040_0922 984593 - 983670 - | hypothetical protein TERM 1023 984846 - 984882 + r 100 -18.7 -3.6502 | opp_overlap 984830 984858 CTGGGGTGAATTGGC CAGGGGCCAAGAGGGGC AAA GCCCCTCTCGTCCTCTG TTTCCATCAGCCCTC TM1040_0923 986142 - 984889 - | tyrosyl-tRNA synthetase TERM 1024 985196 - 985164 - G 80 -14.7 -3.01712 | CGCCCTTTTCGAACA CTTCGCGCGCTGTCG CCT CGGCAGCGCGCGCCG CCTCGGCCCCATGCA TERM 1025 985930 - 985943 + g 77 -3.7 -5.00616 | overlap 985908 985930 CCCCATCAGGGTGAT CGGGC GGTG GCCGG TTTTTTGCAGCCAGC TERM 1026 986545 - 986563 + G 79 -8.8 -4.25104 | TGATGACGGACCACG CCGATGTG GAT CTCATCGG TTTTCATGGCCAGAC TERM 1027 986697 - 986719 + G 95 -12.6 -4.21974 | GATGTGTCGATGGGC GGCGAGGGCG CAC CGCTCGCGCC TTTCTTCCATCATGC TERM 1028 986946 - 986995 + G 76 -9.1 -4.08767 | overlap 986948 GGTAGGATTGCATCC GGGGGCGCGGTGGAAAACGGCGC GCTG GAGCTGTTTCTCGCCGAGCCCTA TTTTGCGCGGATGCC TERM 1029 986948 - 986993 + G 88 -13.9 -3.6422 | overlap 986946 TAGGATTGCATCCGG GGGCGCGGTGGAAAACGGCGC GCTG GAGCTGTTTCTCGCCGAGCCC TATTTTGCGCGGATG anmK 986286 - 987413 + | anhydro-N-acetylmuramic acid kinase TERM 1030 987507 - 987543 + T 86 -17.9 -2.53263 | opp_overlap 987488 CCGCTCCCGATGGGC CAGGCGCCACGCAGCCG GAC CAGCTGCGTGGCGCGGG TCGCTTCGGGCTGAG TM1040_0925 988055 - 987585 - | hypothetical protein TERM 1031 988915 - 988929 + G 71 -7.1 -4.2828 | TTTATGGACGTGTAT CACCC CAATC GGGTG TTTTCCTCGATCGAC TM1040_0926 988123 - 989541 + | hypothetical protein TERM 1032 989711 - 989684 - T 100 -15.7 -5.40072 | opp_overlap 989709 GCCGGGTTAAAAAAA CGGGCTCAAGA TCGCTG TCTTGAGCCCG CGTTGCGATTTCTCA TM1040_0927 991133 - 989796 - | DEAD/DEAH box helicase-like TERM 1033 990705 - 990681 - G 70 -4.1 -4.58786 | overlap 990677 990682 990683 ATCAAGAACAAGAAA GTCGCAAGACC CCA GATCCAGCGCC TTGCGGTCGAGGATG TERM 1034 991932 - 991914 - g 73 -4.4 -4.60041 | overlap 991900 ACGCATTGCCAAAAA GCTCGGCT ATG AGCTGCGC GGTCATAAGCTCGAA TM1040_0928 991564 - 991980 + | FUR family manganese uptake regulator TM1040_0929 992140 - 993033 + | hypothetical protein TM1040_0930 994274 - 993036 - | major facilitator transporter TERM 1035 994212 - 994176 - G 75 -2.2 -5.00138 | overlap 994200 994201 994209 994211 TACCGAAATGAAAAA GGTCTGACCAAAGCTC GACAG GAACGTCAGCAAGACC CCTGCCGAAAGATAG TERM 1036 994341 - 994351 + H 89 -6.8 -5.24129 | overlap 994335 TTGCGGTATCGCGTG GACG GCG CGTC TTTTTTGTCGCGCCA TM1040_0931 994521 - 995798 + | enolase TERM 1037 995825 - 995846 + F 100 -14.4 -5.29846 | opp_overlap 995823 AGCCGACCAACCATG CGCCCCGG GTCACA CCGGGGCG TTTTTCTTTGGGGTT TERM 1038 996259 - 996274 + G 83 -4.6 -5.07567 | GTGGATGCAGGATGG CGACTG TGAG CTGTCG TTTTTTGGCCTCTCC TM1040_0932 995924 - 996535 + | GCN5-related N-acetyltransferase TM1040_0933 997064 - 996615 - | GCN5-related N-acetyltransferase TM1040_0934 998002 - 997061 - | inosine/uridine-preferring nucleoside hydrolase TERM 1039 997126 - 997100 - G 71 -7.2 -4.22883 | overlap 997101 GAGGAGCGAAAAGAA CCCATCGGCATC TAT GTCGCCGATGAA AAGAGCATTGGCCGG TERM 1040 997834 - 997853 + g 75 -2.1 -4.87665 | gap 1, overlap 997834 997835 CCTGACGTTTGGCGA C-CTCGCA GACGA TGCGGGCG TTTTTCTGGGTCAGC TERM 1041 998213 - 998246 + G 71 -8 -4.07568 | opp_overlap 998211 GTTTGCATGAAAACC GCGCCGCTCTGGCC AACGCG GGCTATGGCGTCGC TTTTCCCGCGCGCGA TM1040_0935 998101 - 999015 + | hypothetical protein mazG 999844 - 999002 - | nucleoside triphosphate pyrophosphohydrolase TERM 1042 999351 - 999361 + g 81 -8.2 -4.63542 | overlap 999349 999350 CAGTCAAACCCCACC CGCG CCG CGCG TTTTTGCAGCTTGTA TERM 1043 999777 - 999732 - G 75 -7.6 -4.19817 | gap 2, opp_overlap 999750 999769 999770 999771, overlap 999733 GCGATGGAGGCAAAA TCCTGCTCGATGTCCCAAGGGC AGCC GCCCTTTGG--ATCGCGCAGGC GGCGCATGATTTCCA TERM 1044 1000836 - 1000821 - g 71 -8.2 -4.12902 | opp_overlap 1000786 CAACGACGCGGAAAA GGCGGC TTTT GCCACC GATATCGCGCGCGAC TM1040_0937 999907 - 1001070 + | peptidase M20D, amidohydrolase TERM 1045 1001084 - 1001110 + F 72 -13.1 -2.54896 | gap 1, overlap 1001081 GAAATCGCGATGTGG GGCGGGCTT-TC GGAT GACAAGCCCGCC TGCATTGGCTAGGAC TM1040_0938 1001097 - 1002125 + | agmatinase TM1040_0939 1002122 - 1003069 + | agmatinase TERM 1046 1003124 - 1003145 + T 71 -11.5 -3.18264 | CGGGACTAGGTGCGC CGGGCGGGG AGGC TCCCGCCTG TTGCTGGATCAGCAG TM1040_0940 1003671 - 1003342 - | hypothetical protein TERM 1047 1004545 - 1004503 - g 70 -4.1 -4.58663 | gap 1, overlap 1004504 1004505 ACCAGTTCGGAAAAA TCC-CAGCACCGAAACCGCG AGAT CGCAATGCAGGTGCTGAAGA CCCGGCTCTATGACC TM1040_0941 1003744 - 1004796 + | peptide chain release factor 1 TERM 1048 1004859 - 1004883 + G 76 -9.1 -4.09685 | opp_overlap 1004844 1004861, overlap 1004862 GCGGCGGGGGTAGAG GACCCCGCGCG CGA TGCGCGGGTGC TTTTGGCGCATGCCG TERM 1049 1004862 - 1004880 + G 76 -13.8 -3.08508 | opp_overlap 1004844 1004861, overlap 1004859 GCGGGGGTAGAGGAC CCCGCGCG CGA TGCGCGGG TGCTTTTGGCGCATG TERM 1050 1005132 - 1005094 - g 71 -8.9 -3.84451 | gap 2, opp_overlap 1005124, overlap 1005095 GTCCCGAAACCGAAA CCCTGATCGAAGCGGCGCT TGC AGAGCCG-TTCGAGC-GGG TGCTGGATCTTGGGG TERM 1051 1005290 - 1005302 + G 75 -7.7 -4.1964 | GCGTGCCGACATCCG CCAGT CGA ACTGG TTTTCCGCTGTTGAA TM1040_0942 1004793 - 1005629 + | HemK family modification methylase TM1040_0943 1005791 - 1006501 + | hypothetical protein TERM 1052 1006559 - 1006522 - T 95 -19.3 -2.67209 | opp_overlap 1006529, overlap 1006524 1006529 GATCAATCCAGATCA GACAAAACCCCCACAGC AGGC GCTGCGGGGGTTTTTTC ATGTCCGGCGCAATG TERM 1053 1006557 - 1006524 - T 82 -16.1 -2.87522 | opp_overlap 1006529, overlap 1006522 1006529 TCAATCCAGATCAGA CAAAACCCCCACAGC AGGC GCTGCGGGGGTTTTT TCATGTCCGGCGCAA TERM 1054 1006529 - 1006552 + T 100 -13.8 -5.21709 | opp_overlap 1006524 1006522 1006529 CCAGATCAGACAAAA CCCCCACAGC AGGC GCTGCGGGGG TTTTTTCATGTCCGG TERM 1055 1006552 - 1006529 - T 100 -16 -4.5954 | opp_overlap 1006529, overlap 1006524 1006522 CCAGATCAGACAAAA CCCCCACAGC AGGC GCTGCGGGGG TTTTTTCATGTCCGG ksgA 1007446 - 1006604 - | dimethyladenosine transferase TERM 1056 1007528 - 1007503 - R 74 -10.3 -3.60296 | opp_overlap 1007502 1007519, overlap 1007504 GATTTGCATCCGAAA GGTGCGCAGGG GCTT CCCTGCGCGCA GGTTTGACTTGGGAT TERM 1057 1007527 - 1007504 - R 76 -13.8 -2.75963 | opp_overlap 1007502 1007519, overlap 1007503 ATTTGCATCCGAAAG GTGCGCAGGG GCTT CCCTGCGCGC AGGTTTGACTTGGGA pdxA 1008576 - 1007596 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1058 1008203 - 1008219 + g 83 -2.2 -5.28176 | GGATAGGCAAAGCCG GCGC CATCAATCA GCGC TTTTTTGTGGATCGG TM1040_0946 1009847 - 1008573 - | PpiC-type peptidyl-prolyl cis-trans isomerase TM1040_0947 1012027 - 1009832 - | organic solvent tolerance protein TERM 1059 1010948 - 1010964 + g 74 -5.7 -4.5442 | AATGAAGTCCTGGTT CTCGGCG TCG CGCAGGG TTTTGTAGTTGGAGA TM1040_0948 1013117 - 1012011 - | permease YjgP/YjgQ TM1040_0949 1014253 - 1013114 - | permease YjgP/YjgQ TERM 1060 1014237 - 1014217 - G 77 -3.4 -5.011 | gap 1, opp_overlap 1014217, overlap 1014222 AGCCAAAGAACAAAA GATAT-TGC GACA GCACATATC TGTCGTAGCGTGACA TERM 1061 1015222 - 1015210 - g 73 -9.1 -3.96148 | opp_overlap 1015212, overlap 1015212 GGCGCCGATGATAAA GAGGC CGC GCCTC TGGCCTTGGTCGGGA TM1040_0950 1014475 - 1015950 + | leucyl aminopeptidase TERM 1062 1016350 - 1016340 - g 72 -2.4 -4.74103 | opp_overlap 1016345 CGGGCAATGGAAAAA CCTC ACT GCGG CAGGTTGCTTGGCAC TM1040_0951 1015957 - 1016421 + | DNA polymerase III subunit chi TERM 1063 1016579 - 1016613 + T 100 -16.4 -4.59414 | opp_overlap 1016578 1016577 CGCGTTAGGAGAAGG CCTGCTGCAGCGGCGC GCG GCGTCTGTGCAGCAGG TTTTGCTTCTTCTAA TERM 1064 1016653 - 1016668 + T 77 -11.8 -3.29511 | opp_overlap 1016639 TCCCCGCCGGAGGCA CGCGCC CCAA GGCGCG TTCTCAACGGGTCAG TM1040_0952 1017253 - 1016672 - | hypothetical protein TM1040_0953 1017926 - 1017303 - | multiple antibiotic resistance (MarC)-related proteins TM1040_0954 1019824 - 1017923 - | ABC transporter related TERM 1065 1018074 - 1018084 + g 70 -3.2 -4.60924 | GCAGGGTCCGCGAGC TTGG CAT CCAG TTTTTCGCGCATTTC TM1040_0955 1020018 - 1021610 + | hypothetical protein TM1040_0956 1021740 - 1022948 + | Bcr/CflA subfamily drug resistance transporter TM1040_0957 1023097 - 1023519 + | nucleoside diphosphate kinase TERM 1066 1023580 - 1023612 + T 100 -16.4 -4.07568 | opp_overlap 1023585, overlap 1023585 GGCCAGCTGAAAATC AAAAACCGCCACGC TGCAT GCGTGGCGGTTTTC TTTTGAGAGGGGCCG TERM 1067 1023585 - 1023607 + T 100 -16.3 -5.07652 | opp_overlap 1023585, overlap 1023580 GCTGAAAATCAAAAA CCGCCACGC TGCAT GCGTGGCGG TTTTCTTTTGAGAGG TERM 1068 1023607 - 1023585 - T 100 -16.3 -5.0925 | opp_overlap 1023580 1023585 GCTGAAAATCAAAAA CCGCCACGC TGCAT GCGTGGCGG TTTTCTTTTGAGAGG TM1040_0958 1023972 - 1023637 - | TfoX domain-containing protein TERM 1069 1023820 - 1023807 - G 71 -5.3 -4.30576 | GCGCCATCACCAAAA CATAG TAGC CTATG AAATGCGGTTTGCTG TM1040_0959 1024317 - 1025639 + | mannose-6-phosphate isomerase, type II TERM 1070 1026388 - 1026408 + T 73 -9 -3.9281 | CGCCAAAGAGGTTGC GCGGGGTT AGAAC AACCCTGC TTCTTTGGCGGTCAT TM1040_0960 1027038 - 1026394 - | two component LuxR family transcriptional regulator TM1040_0961 1027361 - 1027828 + | oxidoreductase, molybdopterin binding TERM 1071 1028067 - 1028119 + G 74 -12.8 -3.19255 | opp_overlap 1028062 ATCTGAAATATCGCT CCGCCG-CGATGGTGGTGGAAGATCG CAG CGATCTTCCA-CGCCTTCGACGCCAG TTCGATATCTATTAC TERM 1072 1028326 - 1028339 + G 85 -9.5 -4.62069 | CGATGGCAATGATGT GCGCG ATCT CGCGC TTTTTGGCGTGGCGC TM1040_0962 1027874 - 1030345 + | PAS/PAC sensor hybrid histidine kinase TM1040_0963 1030665 - 1031591 + | anti-sigma-factor antagonist TM1040_0964 1031901 - 1032911 + | tRNA-dihydrouridine synthase A TM1040_0965 1032917 - 1033714 + | hypothetical protein TM1040_0966 1034081 - 1033845 - | hypothetical protein TM1040_0967 1034558 - 1034085 - | Holliday junction resolvase YqgF TM1040_0968 1035793 - 1034555 - | cytochrome c-type biogenesis protein CycH TERM 1073 1035169 - 1035184 + g 71 -7.5 -4.21194 | opp_overlap 1035169 GGGCGGTATCCAAAA GCGCG ATATAC CGCGC TTTTGCCTCATAGGC TERM 1074 1035184 - 1035169 - G 75 -8.2 -4.18018 | opp_overlap 1035169 GGGCGGTATCCAAAA GCGCGA TATA CCGCGC TTTTGCCTCATAGGC TM1040_0969 1035985 - 1037280 + | sarcosine oxidase beta subunit family protein TM1040_0970 1037333 - 1037665 + | sarcosine oxidase, delta subunit, heterotetrameric TERM 1075 1039644 - 1039626 - g 72 -11.6 -3.29471 | CTGGCACGACAGCAA CGGCGCCC ATT GGGAGCCG GTGGGCCACTGGCGG TM1040_0971 1037740 - 1040775 + | sarcosine oxidase alpha subunit family protein TM1040_0972 1040768 - 1041337 + | sarcosine oxidase, gamma subunit TERM 1076 1041379 - 1041407 + F 95 -11.8 -4.56597 | gap 1, overlap 1041381 GTGCCTGTTTAATCC G-ATGGCGGCCTT CGCG AGGGCCGCCATTC TTTTTAGACAACAAC TERM 1077 1041381 - 1041404 + F 100 -14.6 -4.40561 | overlap 1041379 GCCTGTTTAATCCGA TGGCGGCCTT CGCG AGGGCCGCCA TTCTTTTTAGACAAC TM1040_0973 1041451 - 1041861 + | hypothetical protein TERM 1078 1042333 - 1042314 - g 78 -2.8 -5.15969 | TCTCAACCTAAAAAA CCTGAAGT TTAA ACTCGAGG TTCAGGACAGGGGAG TM1040_0974 1042009 - 1042398 + | hypothetical protein TM1040_0975 1042474 - 1042935 + | hypothetical protein TM1040_0976 1043026 - 1043625 + | superoxide dismutase TERM 1079 1043677 - 1043649 - f 72 -10.1 -3.60627 | opp_overlap 1043651, overlap 1043651 TGAGGTCACTCCAAA GAGGCTCCGTCCG GTT CGGGCGGGGCCTT TTTTTATGCTGGGGA TERM 1080 1043651 - 1043675 + F 100 -17.1 -5.67063 | opp_overlap 1043649 1043651 AGGTCACTCCAAAGA GGCTCCGTCCG GTT CGGGCGGGGCC TTTTTTTATGCTGGG TERM 1081 1043675 - 1043651 - f 79 -12.7 -3.38224 | opp_overlap 1043651, overlap 1043649 AGGTCACTCCAAAGA GGCTCCGTCCG GTT CGGGCGGGGCC TTTTTTTATGCTGGG TERM 1082 1044044 - 1044054 + G 93 -6.8 -5.27923 | opp_overlap 1044035 1044033, overlap 1044033 1044032 CAAAGACACGCTCAT TGGC GTG GCCA TTTTTTCTCGCCTTG TM1040_0977 1043784 - 1044398 + | GCN5-related N-acetyltransferase TM1040_0978 1045072 - 1044530 - | hypothetical protein TM1040_0979 1045222 - 1047177 + | peptidoglycan-binding LysM TERM 1083 1047203 - 1047224 + F 100 -14.4 -4.73682 | opp_overlap 1047201 1047200 AGATTGATGAAATGG CGCGCCCC CGTCGT GGGGCGCG TTTTCTCTTGTCCGA TERM 1084 1048817 - 1048791 - g 84 -8.7 -4.56597 | gap 1 TCGGGCGGTGAAAAA CAGCGCGTCGGG ATTG CCCGAAGC-CTG CTGAAGAACCCGCCA TM1040_0980 1047285 - 1049105 + | ABC transporter related TERM 1085 1049292 - 1049273 - f 80 -5 -4.98531 | CTTGCAAACGAAAAA TCAGGC TGGAGATC GCCTGA ATTCAGTTCCTGCGC TERM 1086 1049303 - 1049325 + F 70 -11.2 -3.0218 | overlap 1049323 CCTGAATTCAGTTCC TGCGCGACAC CCA GTGGCGCGCG TGTCTCTCGCTCTCT TM1040_0981 1049409 - 1049657 + | calcium-binding EF-hand TERM 1087 1049874 - 1049898 + T 95 -12.2 -4.62069 | gap 1, opp_overlap 1049874, overlap 1049866 GTTGCAACCGGAGAA GACCTC-CCGC TTTT GCGGCGAGGTC TTTTTCCCATGCGGC TERM 1088 1049898 - 1049874 - T 77 -12.2 -3.36492 | gap 1, opp_overlap 1049866 1049874 GTTGCAACCGGAGAA GACCTC-CCGC TTTT GCGGCGAGGTC TTTTTCCCATGCGGC TM1040_0982 1050601 - 1050017 - | TetR family transcriptional regulator TERM 1089 1050540 - 1050528 - G 70 -4.7 -4.56597 | overlap 1050529 CTCTGTTTGGAAAAA CGCCG CTG CGCCG CCGCAAGAATGCGCT TM1040_0983 1050757 - 1051590 + | short chain dehydrogenase TM1040_0984 1052015 - 1053841 + | methyl-accepting chemotaxis sensory transducer TERM 1090 1053898 - 1053919 + T 100 -18.7 -4.70659 | opp_overlap 1053887 CAAAGCTCAGCTTAC CCCGGCGCC ACCT GGCGCCGGG TTTTTCGATCTGAGC TM1040_0985 1054285 - 1054046 - | hypothetical protein TM1040_0986 1054578 - 1054261 - | hypothetical protein TERM 1091 1054859 - 1054834 - R 100 -18.3 -5.14965 | opp_overlap 1054827 1054823 ATGGGGATCAAAAAA CGCCCCGCTGA AGAT CCAGCGGGGCG TCCATGGTGCTTGTG TM1040_0987 1058678 - 1054875 - | acriflavin resistance protein TERM 1092 1058646 - 1058628 - G 82 -14.6 -3.16191 | CGAGATCGCGATGAA GGCGAGGA CCA TCCTCGCC CGATCTGCGGCCCAG TM1040_0988 1059922 - 1058675 - | secretion protein HlyD TM1040_0989 1060287 - 1060955 + | hypothetical protein TERM 1093 1061567 - 1061556 - g 78 -7.2 -4.65895 | CGCTTGATGCAAAAA CCGG CGCG CCGG TGTGGCGACAGGAAC TM1040_0990 1061024 - 1062349 + | Pyrrolo-quinoline quinone TERM 1094 1063211 - 1063167 - g 89 -10 -4.66264 | gap 2, opp_overlap 1063185 GAAAAGTTCGAAAAA CTCGCCGAGGAGACCGCGCCCG AAA CGGATGTGGTC-C-TCGACGAG GATGAAAACGAGGCG TERM 1095 1063698 - 1063670 - g 71 -6.1 -4.42667 | gap 1, opp_overlap 1063676, overlap 1063677 CGAAAAGCAGGAAAA GCTCAAAGCGCT GAAAGA AGC-CTTCGAGC GCCTGTTGCCGCAGC TERM 1096 1064112 - 1064093 - g 80 -3.4 -5.10208 | overlap 1064095 TAAGGGCAAGAAAAA GTCGACGC CCTC GCGTCTGC GCAAACACCTTGAAG engA 1062663 - 1064141 + | GTP-binding protein EngA TERM 1097 1064222 - 1064253 + F 100 -17.3 -3.70902 | TGCCGTGACCCTGAT CCCCCCAGCCGGT TGTTGC ACCGGCTGGGGCG TTTGCGTGTGGGGGC TERM 1098 1065119 - 1065137 + G 75 -3 -4.87318 | overlap 1065103 1065122 CTTGCAGGGATCGTC CTGCCTGG ATT TCGGGTGG TTTTTCGATTTTGCC TM1040_0992 1064391 - 1065344 + | fatty acid desaturase TERM 1099 1065916 - 1065891 - g 85 -5.9 -5.06414 | GCGGCGGAAGAAAAA GCGGCCAAGGC TGAG GCCAAGGCGGC CAAAGCTGCCAAGAA TM1040_0993 1065465 - 1066124 + | helix-hairpin-helix DNA-binding, class 1 TERM 1100 1066151 - 1066182 + T 77 -11.7 -3.66256 | opp_overlap 1066157, overlap 1066157 TAGGGCCTTTGAGTG AAAAAACCGGTGC GATGTG GCACCGGTTTTTC TGTTTTAACGCTCTG TERM 1101 1066176 - 1066157 - T 100 -10.7 -5.08824 | opp_overlap 1066151 1066157 CTTTGAGTGAAAAAA CCGGTGC GATGTG GCACCGG TTTTTCTGTTTTAAC TERM 1102 1066157 - 1066176 + T 100 -10.7 -5.28983 | opp_overlap 1066157, overlap 1066151 CTTTGAGTGAAAAAA CCGGTGC GATGTG GCACCGG TTTTTCTGTTTTAAC TM1040_0994 1067536 - 1066244 - | seryl-tRNA synthetase TERM 1103 1066620 - 1066637 + g 74 -7 -4.32034 | opp_overlap 1066612 TCCAGAATGCCCTCG GCGCAT CCCAAC ATGCGC TTTTGCTCCTCGTCG TM1040_0995 1067792 - 1068076 + | protein translocase subunit yajC TERM 1104 1068148 - 1068168 + G 75 -8.2 -4.1899 | AGAGGGTTCTCATCT GGCTGGTC TGTGT GGCCGGCC TTTTGGCTGCCCTGC secD 1068111 - 1069775 + | preprotein translocase subunit SecD secF 1069779 - 1070747 + | preprotein translocase subunit SecF TERM 1105 1070768 - 1070800 + F 90 -17.8 -2.94161 | opp_overlap 1070767, overlap 1070772 GTGGTTCGAGATGAG GAGGCAGCCGCGAC CTGGT GTCGCGGCTGTTTC GTTTCTGGACCTTTG TERM 1106 1070772 - 1070796 + F 100 -17.2 -4.13995 | opp_overlap 1070767, overlap 1070768 TTCGAGATGAGGAGG CAGCCGCGAC CTGGT GTCGCGGCTG TTTCGTTTCTGGACC TM1040_0998 1070995 - 1071348 + | hypothetical protein TM1040_0999 1071433 - 1072047 + | cytochrome c biogenesis protein CcmA TM1040_1000 1072044 - 1072700 + | heme exporter protein CcmB TM1040_1001 1072745 - 1073479 + | heme exporter protein CcmC TM1040_1002 1073472 - 1073627 + | Heme exporter protein D (CcmD) TM1040_1003 1073620 - 1074156 + | periplasmic protein thiol TM1040_1004 1074863 - 1074159 - | short-chain dehydrogenase/reductase SDR TERM 1107 1074228 - 1074207 - G 78 -10.1 -3.91897 | overlap 1074208 TTCGCCAGTGATAAA GCTCGCCTC CTCG GAGGCGAGA AAACGCACGGCCTTG TERM 1108 1074227 - 1074208 - G 75 -13.6 -2.94924 | overlap 1074207 TCGCCAGTGATAAAG CTCGCCTC CTCG GAGGCGAG AAAACGCACGGCCTT TM1040_1005 1075395 - 1075048 - | hypothetical protein TERM 1109 1075486 - 1075505 + r 80 -15 -2.68952 | opp_overlap 1075486, overlap 1075483 1075482 ATGGTAGAATAAAAA GGGTGGCC GACT GGCCACCC TCAGTTGTCTTTGGC TERM 1110 1075505 - 1075486 - R 100 -15 -5.19328 | opp_overlap 1075486 1075483 1075482 ATGGTAGAATAAAAA GGGTGGCC GACT GGCCACCC TCAGTTGTCTTTGGC TM1040_1006 1078283 - 1075536 - | aconitate hydratase TERM 1111 1078034 - 1078053 + g 76 -7.1 -4.57569 | gap 1, overlap 1078016 1078015 1078037 GGCGATAGGCGATCT CGCGCGGG TTCTT CCCGC-CG TTTTTGGCCCAGTCG TERM 1112 1078707 - 1078727 + G 82 -12.7 -3.57144 | opp_overlap 1078711 GTGGATTATTGGGAC TATATCGGC TGG GCCGATATA TTTGCAGATCCGGCC TM1040_1007 1078584 - 1079210 + | hypothetical protein TM1040_1008 1080134 - 1079214 - | lipid A biosynthesis acyltransferase TERM 1113 1080240 - 1080220 - R 100 -15.4 -4.45771 | AGCGCAAAAGAGAAA CCCGCGCC ACCGG GGCGCGGG CATCTGGAGGTCCGA TM1040_1009 1081391 - 1080288 - | flagellar motor switch protein FliG TM1040_1010 1082015 - 1081470 - | tetratricopeptide TPR_2 TERM 1114 1082130 - 1082111 - R 100 -12.1 -5.45802 | opp_overlap 1082111 GGGGTAAAAGAAAAA CCCCGCC GAGGAG GGCGGGG TTTCTGATCTGTGCA TERM 1115 1082111 - 1082130 + r 87 -12.1 -4.04318 | opp_overlap 1082111 GGGGTAAAAGAAAAA CCCCGCC GAGGAG GGCGGGG TTTCTGATCTGTGCA TM1040_1011 1083461 - 1082157 - | adenylosuccinate lyase TERM 1116 1082628 - 1082643 + g 93 -6.8 -5.18726 | AAGACCGGTGAGATT CTCGGT CAGG ACCGGG TTTTTCTTGTGCGGC TM1040_1012 1083908 - 1083576 - | hypothetical protein TM1040_1013 1085192 - 1083921 - | OsmC-like protein TERM 1117 1085119 - 1085099 - G 81 -8.2 -4.64144 | overlap 1085114 AACAATGGGCAAAAA GGGCGGTG GCCAA CACCGGCC CTTCGGGCAGGTCGA TERM 1118 1085451 - 1085469 + G 71 -8 -4.12188 | TTTGCGCCGAGTTTG GCGCTGAG GGG CCCGGCGC TTTTGGACGTGATCC TM1040_1014 1085321 - 1085908 + | NUDIX hydrolase TERM 1119 1086028 - 1086055 + G 74 -3.2 -4.8143 | overlap 1085998 1086038 1086048 AGTCTTGCGGTCTTT CGCGTGCCCTTC GCCG GGGGGGCGATCG TTTTTGCCTTCTTGC TM1040_1015 1085908 - 1086813 + | endonuclease/exonuclease/phosphatase TM1040_1016 1088175 - 1086832 - | peptidase M24 TERM 1120 1087783 - 1087759 - G 78 -2 -5.14626 | gap 1, opp_overlap 1087766, overlap 1087761 1087764 ACGATCAAAATAAAA CAGATCCGCGC CCGA GCGCTGTTC-G CGTACCAAGGGGTTG TM1040_1017 1088369 - 1089136 + | hypothetical protein TERM 1121 1089125 - 1089152 + T 72 -9.9 -3.63656 | opp_overlap 1089126, overlap 1089126 TGGGGAGACGAGAAA ACCCCGCAATA GGCTGA TATTGCGGGGC TTATATGTCCATTTT TERM 1122 1089151 - 1089126 - T 95 -13.4 -4.50976 | opp_overlap 1089125 1089126 GGGGAGACGAGAAAA CCCCGCAATA GGCTGA TATTGCGGGG CTTATATGTCCATTT TERM 1123 1089126 - 1089151 + T 76 -13.4 -2.77109 | opp_overlap 1089126, overlap 1089125 GGGGAGACGAGAAAA CCCCGCAATA GGCTGA TATTGCGGGG CTTATATGTCCATTT TM1040_1018 1090373 - 1089174 - | hypothetical protein TM1040_1019 1091252 - 1090440 - | hypothetical protein TM1040_1020 1092602 - 1091340 - | molecular chaperone, DnaK TM1040_1021 1092602 - 1093228 + | hypothetical protein TERM 1124 1093327 - 1093347 + Tr 95 -15.4 -3.71873 | opp_overlap 1093327 CAGAGCATAGAAAAA GGGCGCCC AGATG GGGCGCCC TTTCCATATCAGTCC TERM 1125 1093347 - 1093327 - TR 100 -15.4 -5.02502 | opp_overlap 1093327 CAGAGCATAGAAAAA GGGCGCCC AGATG GGGCGCCC TTTCCATATCAGTCC TM1040_1022 1094781 - 1093375 - | L-glutamine synthetase TERM 1126 1094040 - 1094062 + g 73 -9.8 -3.64357 | overlap 1094038 CGGATTTGCCATAGG CGTGGGCCAC GTT GTGGATCACG TATTTGTACTTCTGC TERM 1127 1094423 - 1094448 + g 70 -3.2 -4.58395 | overlap 1094424 1094429 GCGACGTCACCGATG CCGGAGGCCT TGAGGT AGGCTTCTGC TTTTTCGGCAGTGCC TM1040_1023 1095207 - 1094869 - | nitrogen regulatory protein P-II TM1040_1024 1095376 - 1096962 + | YjeF-related protein-like TM1040_1025 1097507 - 1096959 - | hypothetical protein TERM 1128 1100421 - 1100404 - g 71 -5.5 -4.30719 | opp_overlap 1100401 1100420, overlap 1100400 1100406 GCCGCCGAGAAGAAA GGCGAGA GCCT TCTTGCC TCGACCCCGGTTGTG TM1040_1026 1097776 - 1100565 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 1129 1100727 - 1100703 - f 74 -7 -4.44667 | opp_overlap 1100685 1100704, overlap 1100704 TCTTTGAACAACAAA GGGCGTCTCC TATTG GGAGGCGCCT TTTTTCAATCAGAGC TERM 1130 1100726 - 1100704 - f 70 -10.5 -3.26318 | opp_overlap 1100685 1100704, overlap 1100703 CTTTGAACAACAAAG GGCGTCTCC TATTG GGAGGCGCC TTTTTTCAATCAGAG TERM 1131 1100704 - 1100726 + F 100 -13.4 -5.08824 | opp_overlap 1100704 1100703, overlap 1100685 CTTTGAACAACAAAG GGCGTCTCCT ATT GGGAGGCGCC TTTTTTCAATCAGAG TERM 1132 1100778 - 1100759 - f 76 -5 -4.72272 | GTCCTGGAGTAAAAA TTGCGC GGCTGTGA GCGCAA AGGTTTCCCAGAAAT TERM 1133 1101538 - 1101558 + G 80 -11.1 -3.75105 | GTCTACCGCAATGGG CTGACCCTC GCA GAGGGGCAG TTCTTCATGAGTTCC TM1040_1027 1100965 - 1103352 + | methyl-accepting chemotaxis sensory transducer TERM 1134 1103439 - 1103416 - f 74 -10.3 -3.61244 | gap 1, opp_overlap 1103416, overlap 1103412 CAGGCCACAAACCAA GAGCGTGCCG GTTCA CGGC-CGCTC TTTTTCGTTTTTCCT TERM 1135 1103416 - 1103439 + F 100 -10.3 -5.1971 | gap 1, opp_overlap 1103416 1103412 CAGGCCACAAACCAA GAGCGTGCCG GTTCA CGGC-CGCTC TTTTTCGTTTTTCCT TERM 1136 1105773 - 1105734 - g 100 -21 -4.14472 | opp_overlap 1105731 1105746 1105766, overlap 1105736 CCAATATTCTGAAAA CATTCGGGAATATGCAGA CCCT TCTGCATATTCCCGAAGG CGGGTTCTCCACCAA TERM 1137 1105771 - 1105736 - g 100 -22.2 -3.66658 | opp_overlap 1105731 1105746 1105766, overlap 1105734 AATATTCTGAAAACA TTCGGGAATATGCAGA CCCT TCTGCATATTCCCGAA GGCGGGTTCTCCACC TM1040_1028 1103990 - 1107736 + | signal transduction histidine kinase with CheB and CheR activity TM1040_1029 1107741 - 1108124 + | response regulator receiver protein TERM 1138 1108908 - 1108928 + G 76 -7.5 -4.56358 | GGACACGCTGACCGT GGGGGTACA TCA TGTGCCGCC TTTTGTGTCGATCTC TM1040_1030 1108141 - 1110486 + | histidine kinase TM1040_1031 1110483 - 1110878 + | response regulator receiver protein TERM 1139 1110956 - 1110991 + F 89 -17.6 -2.98823 | gap 1, overlap 1110962 1110966 1110970 GATTGCCGTGGTTGA CGCCAGCCCAGCG-GGG GCG CCCGCGCTGGGTTTGCG TGTGTGTCGGACGCC TERM 1140 1110962 - 1110985 + F 91 -14.6 -3.75535 | gap 1, overlap 1110956 1110966 1110970 CGTGGTTGACGCCAG CCCAGCG-GGG GCG CCCGCGCTGGG TTTGCGTGTGTGTCG TM1040_1032 1111339 - 1112463 + | hypothetical protein TERM 1141 1112640 - 1112628 - f 76 -6.9 -4.62904 | AAACAGGGTGAAAAA GCCCC ATT GAGGC GCTTGCCGGGGCGGA TERM 1142 1114056 - 1114042 - g 74 -6.4 -4.40561 | overlap 1114039 GTGTCTGAAAAAGAA GTCTCC AAA GAAGAC CTGCAGAAAGCCGTT tig 1112761 - 1114092 + | trigger factor TERM 1143 1114120 - 1114138 + F 100 -13.8 -6.23317 | opp_overlap 1114120 TTGTATTTTCGAAAA GGCCGCCG TTC TGGCGGCC TTTTTTTGTTTTTGT TERM 1144 1114138 - 1114120 - f 91 -13.1 -4.09685 | opp_overlap 1114120 TTGTATTTTCGAAAA GGCCGCC GTTCT GGCGGCC TTTTTTTGTTTTTGT TM1040_1034 1114264 - 1114497 + | hypothetical protein TERM 1145 1115216 - 1115226 + G 70 -3.2 -4.60041 | GCCAGTTCCTTGGCC CGGA GGA TCTG TTTTTCCGCATCGGT TM1040_1035 1114531 - 1115472 + | diguanylate cyclase TERM 1146 1115600 - 1115574 - T 100 -16.6 -5.50723 | opp_overlap 1115568 1115596 CCACCAAAAGAAAAA CGCCGCCCAG TCCAATG CTGGGCGGCG CGATGCCGTTTTTCG TERM 1147 1115596 - 1115608 + T 76 -6.9 -4.65895 | opp_overlap 1115574, overlap 1115568 CAGTCCAATGCTGGG CGGCG CGA TGCCG TTTTTCGCTCAGAGC cpdB 1117575 - 1115617 - | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 1148 1117092 - 1117106 + g 76 -5.6 -4.63486 | overlap 1117093 GGGTCTCATCCTCGC GCGGTG AGG CACCGG TTTTCTTGGCGACAT TM1040_1037 1118326 - 1117856 - | lytic transglycosylase, catalytic TM1040_1038 1118812 - 1119660 + | flagellin-like TERM 1149 1119682 - 1119715 + F 74 -4.6 -4.83615 | gap 2, overlap 1119686 TTTCACGCGTTGAAT TGGA--TCGCCGGCCC CTTG GGGTCGGCGATTTTCG TTTTTATCCCAAGTG TERM 1150 1119686 - 1119709 + F 100 -16 -4.82678 | overlap 1119682 ACGCGTTGAATTGGA TCGCCGGCCC CTTG GGGTCGGCGA TTTTCGTTTTTATCC TERM 1151 1120031 - 1120013 - g 76 -8.8 -4.07133 | CATTCTGACAAACAA CGGCGCAA TGG TTGCGCTG CAGACCCTGAAGTCC TM1040_1039 1119990 - 1120835 + | flagellin-like TERM 1152 1120862 - 1120884 + F 100 -18.4 -4.18702 | CGCGTTTGAATTGGA CCGCCGGCCC TTC GGGTCGGCGG TTTCTTGCGCGTTAT TM1040_1040 1121099 - 1121977 + | flagellin-like TM1040_1041 1122288 - 1122662 + | hypothetical protein TM1040_1042 1123481 - 1123134 - | hypothetical protein TERM 1153 1123524 - 1123555 + r 83 -16 -3.01712 | opp_overlap 1123529 1123544, overlap 1123529 AAGACACTACTAAAG AAAAAGGCGGCATC CGAA GATGCCGCCTTTTC TGTTCCCGACAAAGG TERM 1154 1123529 - 1123550 + r 100 -15.9 -4.66537 | opp_overlap 1123529 1123544, overlap 1123524 ACTACTAAAGAAAAA GGCGGCATC CGAA GATGCCGCC TTTTCTGTTCCCGAC TERM 1155 1123550 - 1123529 - R 100 -15.9 -5.34309 | opp_overlap 1123524 1123529, overlap 1123544 ACTACTAAAGAAAAA GGCGGCATC CGAA GATGCCGCC TTTTCTGTTCCCGAC rplI 1124218 - 1123604 - | 50S ribosomal protein L9 TERM 1156 1123676 - 1123714 + g 82 -11 -3.9461 | opp_overlap 1123687 AGCTGCGCCACCGAT GTCGTCGAAGAGTTCGGA GAT TTCGAACTCTGCTGCGGC TTCTTCTTCAGCGGC rpsR 1124459 - 1124232 - | 30S ribosomal protein S18 rpsF 1124843 - 1124490 - | 30S ribosomal protein S6 TM1040_1046 1125241 - 1125774 + | hypothetical protein TERM 1157 1125863 - 1125890 + F 75 -13.4 -2.59431 | overlap 1125859 GACATTCCCGTGAGG CCCGCCCGATCC GACA GGATTTGGCGGG TCAATTGTGCAGCGC TERM 1158 1125922 - 1125942 + F 72 -10.4 -3.51411 | GTTTTATACCAATCG CATCCGGC GCACA GCCGGGTG TTCATTTCCCAACAT TERM 1159 1125950 - 1125968 + F 87 -11.8 -4.09864 | GCCGGGTGTTCATTT CCCAACAT CAC ATGTTGGG TTTTGCGGACTAGCT TM1040_1047 1126045 - 1126620 + | YceI TERM 1160 1126649 - 1126672 + F 100 -12.4 -5.46657 | opp_overlap 1126649, overlap 1126636 CACGGCGCCAATCGA CCACTGGTCC CTCG GGGCCGGTGG TTTTTTGTTGCCGTG TM1040_1048 1126856 - 1127638 + | ABC-type amino acid transport/signal transduction systems TERM 1161 1127737 - 1127697 - T 91 -11.8 -4.37502 | gap 1, opp_overlap 1127698 1127701, overlap 1127699 1127700 ACCATGACATGAAAA CAGGCCGCCGCGCGTCCCA TTTA TGGGA-GCGCGGCGGTTTT TGCTTGGAGCGGCAT TERM 1162 1127735 - 1127699 - T 91 -14.4 -3.78877 | gap 1, opp_overlap 1127698 1127701, overlap 1127697 1127700 CATGACATGAAAACA GGCCGCCGCGCGTCCCA TTTA TGGGA-GCGCGGCGGTT TTTGCTTGGAGCGGC TERM 1163 1127734 - 1127700 - T 88 -17.9 -2.86603 | gap 1, opp_overlap 1127698 1127701, overlap 1127699 1127697 ATGACATGAAAACAG GCCGCCGCGCGTCCCA TTTA TGGGA-GCGCGGCGGT TTTTGCTTGGAGCGG TERM 1164 1127701 - 1127733 + T 100 -21.4 -4.8622 | gap 1, opp_overlap 1127700 1127699 1127697, overlap 1127698 TGACATGAAAACAGG CCGCCGCGCGTCCCA TTTA TGGGA-GCGCGGCGG TTTTTGCTTGGAGCG TM1040_1049 1129018 - 1127786 - | cytochrome B561 TERM 1165 1129722 - 1129700 - g 75 -8.3 -4.24002 | TTTGAAACCGTAAAA GCCGTGGCC GCCGA GGCCGCAGC CGAGGGCGAGGTGGT TERM 1166 1129843 - 1129829 - g 72 -2.7 -4.86621 | overlap 1129830 ATCGCCAAGGAAAAA GGCGC CAAAC GCGCG GTGATGCTGCCGGTC TM1040_1050 1129265 - 1130200 + | [Acyl-carrier-protein] S-malonyltransferase TM1040_1051 1130221 - 1130958 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1167 1131007 - 1130984 - f 72 -9.5 -3.61652 | opp_overlap 1130984, overlap 1130980 CGCTCAAAGAACCAA GCCGCGCCT TTATCG AGGTGCGGC TTTTTTATGTGTTTC TERM 1168 1130984 - 1131007 + F 100 -12.4 -5.51046 | opp_overlap 1130984 1130980 CGCTCAAAGAACCAA GCCGCGCCTT TATC GAGGTGCGGC TTTTTTATGTGTTTC acpP 1131343 - 1131576 + | acyl carrier protein TERM 1169 1131618 - 1131645 + F 100 -15.6 -4.43283 | opp_overlap 1131617 TTCGTGATTGAAGAG GTGGCGCTTTCC TGAA GGGAAGCGCCGC TTTCTGTTTGTCTGC TERM 1170 1132459 - 1132436 - g 81 -8.2 -4.63932 | gap 1 CACTCTTCAACAAAA CCATCACCCTC GAA GAGG-CGATGG AGACGGCGCAGCCCA TM1040_1053 1131760 - 1132503 + | histidine biosynthesis TERM 1171 1132811 - 1132843 + F 100 -16.3 -4.63218 | opp_overlap 1132807 1132806 GGGTCTGAAACGTCA CAGGCCGCAGGCAAA TTA TTCGCCTACGGCCTG TTTTCTTGAGAGGGC TM1040_1054 1133065 - 1134333 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 1172 1134358 - 1134385 + G 84 -10.6 -4.1891 | opp_overlap 1134360, overlap 1134361 CAGTCTGGCCTCGAA CATGCTGACGAT CCTG ATCGTCGGCCTG TTTCTCTTCGCGGGG TM1040_1055 1134335 - 1135489 + | aminodeoxychorismate lyase TERM 1173 1135493 - 1135521 + F 100 -16.7 -3.72576 | opp_overlap 1135490 1135486, overlap 1135494 1135496 AACAACAACTGACAG TCATGAGGGGGGC GCT GCCCCCCTCGTGC TTTGCTGGGCAAAGC TERM 1174 1135494 - 1135520 + F 100 -20.2 -2.83403 | opp_overlap 1135490 1135486, overlap 1135493 1135496 ACAACAACTGACAGT CATGAGGGGGGC GCT GCCCCCCTCGTG CTTTGCTGGGCAAAG TERM 1175 1135496 - 1135518 + F 89 -17 -2.96695 | opp_overlap 1135490 1135486, overlap 1135494 1135493 AACAACTGACAGTCA TGAGGGGGGC GCT GCCCCCCTCG TGCTTTGCTGGGCAA TERM 1176 1135719 - 1135769 + F 83 -11.2 -3.89524 | gap 2, opp_overlap 1135719 ACAGCAGCTGGAAAA CGTGGGGGCAAGGATCGCAGGACC TGGAC GGGCCT-TGATCCTCGCCTCC-CG TTTCTCCCGTCGGAT TERM 1177 1135769 - 1135719 - f 75 -9 -4.12456 | gap 2, opp_overlap 1135719 ACAGCAGCTGGAAAA CGTGGGGGCAAGGATCGCAGGACC TGGAC GGGCCTT-GATCCTCGCCTCC-CG TTTCTCCCGTCGGAT TM1040_1056 1135720 - 1136163 + | hypothetical protein TM1040_1057 1136156 - 1137433 + | hypothetical protein TERM 1178 1137510 - 1137540 + F 82 -13.3 -3.49419 | opp_overlap 1137516, overlap 1137516 CTTTTGAAACCTCTG GTGAAACGCCCGC CTCGC GCGGGCGTTTTTC ATTTTTATCAGAGGC TERM 1179 1137516 - 1137534 + F 100 -13.1 -5.2197 | opp_overlap 1137516, overlap 1137510 AAACCTCTGGTGAAA CGCCCGC CTCGC GCGGGCG TTTTTCATTTTTATC TERM 1180 1137534 - 1137516 - f 79 -13.1 -3.5394 | opp_overlap 1137516 1137510 AAACCTCTGGTGAAA CGCCCGC CTCGC GCGGGCG TTTTTCATTTTTATC TM1040_1058 1137683 - 1138888 + | Phage portal protein, HK97 TM1040_1059 1138881 - 1139105 + | hypothetical protein TERM 1181 1139460 - 1139443 - g 71 -8.3 -4.04922 | overlap 1139436 ACAGAAACCCAGAAA GGCGCCG AGGC CGCCGCC CTGGTGCGCGCGGGC TM1040_1060 1139140 - 1139712 + | peptidase U35, phage prohead HK97 TM1040_1061 1139733 - 1140929 + | phage major capsid protein, HK97 TERM 1182 1140969 - 1140948 - f 73 -12.9 -2.72344 | TTCCAGCCCGAATGA CGGGGCCGG CAGC CCGGCTCCG TCGGTGGGTGCGCGC TERM 1183 1141414 - 1141385 - g 80 -11.3 -3.72893 | overlap 1141402 CACTGGTGGACCAAA CCGGCGCGGAGAC CGAA GTGCCCGCGGCGG CCTATGCGCTGGCAC TM1040_1062 1141108 - 1141710 + | phiE125 gp8 hypothetical protein TM1040_1063 1141707 - 1142045 + | hypothetical protein TM1040_1064 1142042 - 1142449 + | hypothetical protein TM1040_1065 1142485 - 1142898 + | Phage major tail protein, TP901-1 TM1040_1066 1142902 - 1143225 + | hypothetical protein TM1040_1067 1143222 - 1143437 + | hypothetical protein TM1040_1068 1143441 - 1144100 + | phage-related minor tail protein-like TERM 1184 1144293 - 1144305 + G 74 -6.2 -4.56775 | CCTTGAGGATATTGC CGCG CTCAT CGCG TTTTTCGAGGCCCGT TM1040_1069 1144114 - 1144746 + | hypothetical protein TM1040_1070 1144746 - 1145624 + | phage protein TM1040_1071 1145621 - 1146058 + | putative phage cell wall peptidase, NlpC/P60 TERM 1185 1146679 - 1146708 + G 81 -13.6 -3.29263 | gap 1 GTTCTCATTCGAGGT GCTGCGCGCCGAG CAACC CTCGG-GCGCGGC TTATGAACAGGATCT TERM 1186 1147656 - 1147686 + G 71 -5.5 -4.38712 | gap 2 ACCATCTGTTTCACC TCGATCCGCTGTGGT CCG ACC-C-GCAGATCGA TTTTATCGGCATCGA TM1040_1072 1146071 - 1149991 + | hypothetical protein TERM 1187 1149979 - 1150001 + F 70 -10.5 -3.28791 | overlap 1149992 GGCGGTGGCGCAGTG GGCGCTGGC ATGAG GCCGGTGCC TTGTGCGACGGACAT TM1040_1073 1149988 - 1150299 + | hypothetical protein TERM 1188 1150333 - 1150358 + T 100 -18.3 -3.64103 | gap 1, opp_overlap 1150333 TCGGACCACAAAAAA CGCCCCGG-CGC GAT GCGACCGGGGCG TTTCAAATCTCGATC TERM 1189 1150358 - 1150333 - T 100 -18.3 -5.31275 | gap 1, opp_overlap 1150333 TCGGACCACAAAAAA CGCCCCGG-CGC GAT GCGACCGGGGCG TTTCAAATCTCGATC TERM 1190 1150398 - 1150382 - T 71 -7.2 -4.09685 | opp_overlap 1150382 1150385, overlap 1150384 1150385 CTCGATCCGTCAAAA GAGGCG GGCAG CGCCCC CTTTGTCCGATGCTT TM1040_1074 1150618 - 1150412 - | cold-shock DNA-binding protein family protein TM1040_1075 1150977 - 1151783 + | serine O-acetyltransferase TERM 1191 1151805 - 1151784 - f 73 -12.9 -2.60496 | opp_overlap 1151788, overlap 1151783 1151781 CTTGCGGGGAAATAG CGCTGCGGC GCGG GCCGCGGCG TCTGGCGCGCTCGCT TERM 1192 1151835 - 1151868 + F 87 -9.5 -4.56597 | opp_overlap 1151841, overlap 1151837 1151841 TTCCACGTCGATGCG AACAGAGGGGTCGGA CCAG TCCGGCCCCTTTGCG TTTTTGGCCCGCGCG TERM 1193 1151837 - 1151866 + F 85 -16.5 -2.60032 | opp_overlap 1151841, overlap 1151835 1151841 CCACGTCGATGCGAA CAGAGGGGTCGGA CCAG TCCGGCCCCTTTG CGTTTTTGGCCCGCG TERM 1194 1151841 - 1151862 + F 93 -13.7 -3.99805 | opp_overlap 1151841, overlap 1151837 1151835 GTCGATGCGAACAGA GGGGTCGGA CCAG TCCGGCCCC TTTGCGTTTTTGGCC TERM 1195 1151862 - 1151841 - f 71 -11.5 -3.08813 | opp_overlap 1151841 1151837 1151835 GTCGATGCGAACAGA GGGGTCGGA CCAG TCCGGCCCC TTTGCGTTTTTGGCC TM1040_1076 1151953 - 1152252 + | hypothetical protein TERM 1196 1152376 - 1152341 - T 85 -15.5 -3.06171 | opp_overlap 1152347, overlap 1152347 TCGAAGAAGCAGATA GAAAAAGGGCCGGAC GTCTGT GTCCGGCCCTTCTGC GTTCGGTGTGAGTCG TERM 1197 1152370 - 1152347 - T 100 -15.3 -5.06505 | opp_overlap 1152347, overlap 1152341 AAGCAGATAGAAAAA GGGCCGGAC GTCTGT GTCCGGCCC TTCTGCGTTCGGTGT TERM 1198 1152347 - 1152370 + T 90 -16 -3.43117 | opp_overlap 1152341 1152347 AAGCAGATAGAAAAA GGGCCGGACG TCTG TGTCCGGCCC TTCTGCGTTCGGTGT TM1040_1077 1153739 - 1152399 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 1199 1153381 - 1153400 + g 78 -10.6 -3.85698 | opp_overlap 1153337 1153335 GCCGGGGCAGGGGTT GCCGCAGC CGGG GCGGCGGC TTTCTCGGCGGCGGC TERM 1200 1153772 - 1153810 + r 71 -4.5 -4.62471 | gap 1, overlap 1153776 GTAGGTCACTTGCTT CACGGCTTCGATCACCTC GTCG GTGGTGATCAGCGC-GTG TTTTTCGAGGTTGGC TM1040_1078 1155127 - 1153751 - | pyruvate dehydrogenase subunit beta TM1040_1079 1156158 - 1155145 - | pyruvate dehydrogenase (lipoamide) TM1040_1080 1156446 - 1156201 - | hypothetical protein TERM 1201 1156436 - 1156398 - G 76 -10.1 -3.75115 | overlap 1156394 CGCGCACAAAATCAA GCCCGGGCGCCGCGCAG CGGAT CTGCGCAACGTCCCCGC GATGAGACATCCGCC TERM 1202 1156611 - 1156639 + r 75 -10.1 -3.71848 | ATGATGATCTCATCG GCGCGCGCCATGC CCA GCACCGAGCGCGC TTGTTCATCCAGAAG TM1040_1081 1156888 - 1156589 - | septum formation initiator TM1040_1082 1157569 - 1157120 - | hypothetical protein TERM 1203 1157652 - 1157625 - R 100 -13.5 -5.00616 | gap 1, opp_overlap 1157626, overlap 1157627 GGGTTTCCTAAAAAA CA-CCCGGCGCA GAGGA TGCGCCGGGATG TATCGGTAGATGCCT TERM 1204 1157626 - 1157650 + r 75 -12.8 -2.91912 | opp_overlap 1157625 1157627 GGTTTCCTAAAAAAC ACCCGGCGCA GAGGA TGCGCCGGGA TGTATCGGTAGATGC TERM 1205 1157649 - 1157627 - R 100 -16.3 -4.13561 | opp_overlap 1157626, overlap 1157625 GTTTCCTAAAAAACA CCCGGCGCA GAGGA TGCGCCGGG ATGTATCGGTAGATG TM1040_1083 1159446 - 1157674 - | methyl-accepting chemotaxis sensory transducer TERM 1206 1158345 - 1158356 + g 71 -7.2 -4.16016 | TCGACATTTCTTCCA GCGC GGCA GCGC TTTCTTCCAGCGTGG TERM 1207 1159266 - 1159295 + g 70 -4.3 -4.56914 | gap 1, overlap 1159237 1159266 1159267 GATCGCCGATACCTT G-TTCGATGTCTTC CTT GATGGCGTCGAAGC TTTTGCTTTGGGTGC TERM 1208 1159628 - 1159594 - R 95 -13.5 -4.23104 | opp_overlap 1159598, overlap 1159595 TCAAATTGTAACAAA GTTGCCCCGCCGCAG GGATT CTGCAGCGGGGCGAT GAAAGGCTTCATCTG TERM 1209 1159627 - 1159595 - R 89 -17 -3.1314 | opp_overlap 1159598, overlap 1159594 CAAATTGTAACAAAG TTGCCCCGCCGCAG GGATT CTGCAGCGGGGCGA TGAAAGGCTTCATCT pgk 1160941 - 1159751 - | phosphoglycerate kinase TERM 1210 1160971 - 1161019 + H 81 -13.1 -3.54543 | TCAGTGCGACGCGCC CGCGGAGTGCAGGCGCAGAAAAT TCA ATGTCCTGCGCCTGTGTCCTGCG TTTCCGGGCGTCAGT TM1040_1085 1161321 - 1161827 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 1211 1162310 - 1162297 - g 73 -9.5 -3.86202 | opp_overlap 1162296 GTCGATCAGATCAAA CGCGG CCAC CCGCG GTCTGGTGCAATCAC TM1040_1086 1161820 - 1162368 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 1212 1162426 - 1162392 - T 100 -23.1 -3.09273 | opp_overlap 1162392, overlap 1162394 GTCTGTTAAGATAGA GAGGGGCTCTGATAC GAGAT GTATCAGAGCCCCTC TTTTATTTATCTGGT TERM 1213 1162392 - 1162426 + T 100 -23.8 -5.06016 | opp_overlap 1162392 1162394 GTCTGTTAAGATAGA GAGGGGCTCTGATACG AGA TGTATCAGAGCCCCTC TTTTATTTATCTGGT TERM 1214 1162424 - 1162394 - T 100 -19.9 -3.10493 | opp_overlap 1162392, overlap 1162392 CTGTTAAGATAGAGA GGGGCTCTGATAC GAGAT GTATCAGAGCCCC TCTTTTATTTATCTG TM1040_1087 1163047 - 1162460 - | hemolysin-type calcium-binding region TERM 1215 1163453 - 1163431 - R 100 -15.6 -5.86061 | opp_overlap 1163428 1163431 GCCCACCAAAAAAAA TCGGACCCCG ATC CGGGATCCGA TCATATCTCTAAGCA TERM 1216 1163431 - 1163453 + r 76 -13.4 -2.72799 | opp_overlap 1163431, overlap 1163428 GCCCACCAAAAAAAA TCGGACCCCG ATC CGGGATCCGA TCATATCTCTAAGCA TM1040_1088 1164001 - 1163480 - | hypothetical protein TM1040_1089 1165322 - 1163991 - | peptidase M23B TERM 1217 1164791 - 1164835 + g 77 -8.4 -4.37658 | gap 1, overlap 1164809 GGAATTCGAGCTGCT CTG-GCGCGGTTGCCGCGAGC ACCT GCTCGGGGCTGTCGGGCGCGG TTTTCTCGCGCAGTT TM1040_1090 1166392 - 1165550 - | hypothetical protein TERM 1218 1166710 - 1166764 + r 100 -15.5 -4.20354 | gap 2, opp_overlap 1166715 1166716, overlap 1166716 1166758 CTTGCGCTTTGCCAT GCAAATCGCCGGGGGCGGGGCCGCGCC TTT GGCGCGGCCCCGCCC--GGCCCAACGC TTTTCGGGTTGGCTT TERM 1219 1166760 - 1166715 - R 100 -22.5 -3.64703 | gap 1, opp_overlap 1166710 1166716 1166758, overlap 1166716 GCTTTGCCATGCAAA TCGCCGGGGGCGGGGCCGCGCC TTT GGCGCGGCCCCGCCCG-GCCCA ACGCTTTTCGGGTTG TERM 1220 1166716 - 1166763 + r 89 -17.7 -3.1149 | gap 3, opp_overlap 1166716 1166715, overlap 1166710 1166758 CTTTGCCATGCAAAT CG-CCGG--GGGCGGGGCCGCGCC TTT GGCGCGGCCCCGCCCGGCCCAACG CTTTTCGGGTTGGCT TERM 1221 1166758 - 1166716 - R 100 -24.9 -2.78679 | gap 2, opp_overlap 1166710 1166716, overlap 1166715 CTTTGCCATGCAAAT CGCCGGGGGCGGGGCCGCGCC TTT GGCGCGGCCCCGCCC--GGCC CAACGCTTTTCGGGT TM1040_1091 1167378 - 1166917 - | redoxin TERM 1222 1167307 - 1167288 - G 85 -6.4 -4.72545 | overlap 1167289 AGAAAAACAAAACAA CGACCTGA CCCT TCAGGTCC GAAAGGGAAACTTCA TERM 1223 1167952 - 1167969 + G 73 -4.7 -4.62069 | overlap 1167954 GGAAACGGGCAGCGA CGGGGCG GTGG CGCTCAG TTTTTCGGATGGGGC TERM 1224 1169506 - 1169519 + G 73 -4.5 -4.62302 | gap 1, opp_overlap 1169491, overlap 1169506 1169514 TCACCATGTCACGGT GG-CGG GGC CCGGCC TTTTTGCCGGTGTTC TM1040_1092 1167440 - 1170907 + | hypothetical protein TERM 1225 1172131 - 1172146 + G 71 -6.8 -4.25283 | opp_overlap 1172131 TGCGCATGCGGTAAA GGAGCG GTAT CGCTTC TTTTCCTACGGGGAT TM1040_1093 1171133 - 1172182 + | queuosine biosynthesis protein TERM 1226 1172370 - 1172384 + F 71 -7 -4.26076 | overlap 1172371 CTCTGACAGCCCACC GCGGCC TCG GGCCGG TTTTACTGAAAATAC TERM 1227 1172472 - 1172483 + G 71 -7.2 -4.2679 | TGCAAGTTCTGTCGA GCGC CTGG GCGC TTTTGCTGGGCATTG TM1040_1094 1172453 - 1173727 + | major facilitator transporter TERM 1228 1173751 - 1173783 + F 100 -11.4 -5.26316 | gap 1, opp_overlap 1173751 1173750 ACCTGCTGAAAAATT GGCCATCTCT-TCAC AAAA GTGACGGAGGTGGCC TTTTTTGTAACGTAA TM1040_1095 1173877 - 1174455 + | hypothetical protein TERM 1229 1174505 - 1174479 - f 77 -12.2 -3.22884 | opp_overlap 1174479 TGACTAAGTGACCAA GGCCCTGCCG ATTGCCA CGGCGGGGCC TTTTTCATGTGGCGC TERM 1230 1174479 - 1174505 + F 100 -14.4 -4.8048 | opp_overlap 1174479 TGACTAAGTGACCAA GGCCCTGCCG ATTGCCA CGGCGGGGCC TTTTTCATGTGGCGC TERM 1231 1174680 - 1174699 + F 74 -4.4 -4.75308 | opp_overlap 1174680 1174681 1174683, overlap 1174681 GCGGCGTGTGAGAAA TTAGTTTA ACGG TAAACTAG TTTTTGGATCTTAGT TM1040_1096 1174730 - 1176124 + | dihydrolipoamide dehydrogenase TERM 1232 1176150 - 1176170 + F 100 -11.8 -5.28826 | opp_overlap 1176150 ATATGTTTGATGAAA GGCCGGGT CTCAT GCCCGGCC TTTTTTGTGGGGTTT TERM 1233 1176170 - 1176150 - f 80 -11.1 -3.73402 | opp_overlap 1176150 ATATGTTTGATGAAA GGCCGGG TCTCATG CCCGGCC TTTTTTGTGGGGTTT TERM 1234 1176762 - 1176780 + G 81 -8 -4.62783 | CTGCCGCTCGTCGAG GCACGGGG CAT CCCTGCGC TTTTTGCGGTGCATG TERM 1235 1176933 - 1176953 + G 79 -8.1 -4.43844 | opp_overlap 1176929, overlap 1176935 TCGCCGCACAAGCTG GCGCCTGCC GCG GGCTGGCTC TTTTATACCTGCTGC TERM 1236 1176935 - 1176951 + G 71 -9.3 -3.82519 | opp_overlap 1176929, overlap 1176933 GCCGCACAAGCTGGC GCCTGCC GCG GGCTGGC TCTTTTATACCTGCT TM1040_1097 1176282 - 1177466 + | major facilitator transporter uvrA 1177570 - 1180461 + | excinuclease ABC subunit A TERM 1237 1180540 - 1180519 - T 80 -11.5 -3.78934 | opp_overlap 1180519 TTGGGGTTAGAAGAA GAGGGGCGC GGGT GCGCCTCTC TTTGTTTGGAACACT TERM 1238 1180519 - 1180540 + T 95 -13.7 -4.41616 | opp_overlap 1180519 TTGGGGTTAGAAGAA GAGGGGCGC GGGT GCGCCTCTC TTTGTTTGGAACACT TM1040_1099 1181016 - 1180567 - | hypothetical protein TERM 1239 1180720 - 1180746 + g 71 -6.4 -4.19817 | ATACCAGGTGAGGAG CGCGGGGATCAG GAG CTGACGCGCGCG TTTTGGGTCGCTGGG TM1040_1100 1181139 - 1181903 + | XRE family transcriptional regulator TM1040_1101 1182772 - 1181900 - | 3-hydroxyisobutyrate dehydrogenase TERM 1240 1182555 - 1182531 - G 74 -5.6 -4.48221 | opp_overlap 1182531, overlap 1182526 1182532 GAGCAATCCACAAAA GCCGCGCCAT TGGTC ATGGCGGGGA TGATCTCGGAGGCGA TM1040_1102 1183817 - 1182774 - | enoyl-CoA hydratase/isomerase TERM 1241 1183682 - 1183642 - G 72 -13.9 -2.57132 | opp_overlap 1183671, overlap 1183641 CCGCCCGCGCAGAAG GCCTTGTCGCCAGCGGCGT CAA ACACCACCAGCGCCACGGC ATCGTCCTTGGCCCA TM1040_1103 1184987 - 1183842 - | acyl-CoA dehydrogenase-like TERM 1242 1184016 - 1184027 + g 70 -4.4 -4.44046 | CACGTTGGAGCCGGT TTCG GTCA CGAA TTTCTTTGCCATGGC TERM 1243 1184367 - 1184391 + g 81 -13.6 -3.40403 | overlap 1184328 AAATTGCACCTGCGC GGTGGGCTGG CTCTT CCAGCCCATC TTGTCCTCAAGCCCG TERM 1244 1185427 - 1185409 - g 100 -10.2 -5.01811 | overlap 1185411 CTATGAAATGAAAAA CGGGCTGC GCA GCAGCCGG GCGAAAGGGGAGCAG TERM 1245 1186513 - 1186525 + G 71 -6.2 -4.29304 | GGCCAGCCATGATCT CCCC GAAGA GGGG TTTGTGTTCTCCTCC TM1040_1104 1185278 - 1187128 + | TPR repeat-containing protein TERM 1246 1187191 - 1187164 - T 90 -14.8 -3.57908 | opp_overlap 1187162 1187165, overlap 1187165 GATCAAAGACTACAA GGCCGCGTCCCC TTTG GGAGACGCGGCT AATTCTTGGGCCTCT TERM 1247 1187165 - 1187190 + T 87 -16.9 -2.93549 | gap 1, opp_overlap 1187164 1187165, overlap 1187162 ATCAAAGACTACAAG GCCGCGTC-CCC TTT GGGAGACGCGGC TAATTCTTGGGCCTC TERM 1248 1187190 - 1187165 - T 88 -18.3 -2.74022 | opp_overlap 1187165 1187162, overlap 1187164 ATCAAAGACTACAAG GCCGCGTCCCC TTTG GGAGACGCGGC TAATTCTTGGGCCTC TM1040_1105 1187855 - 1187238 - | ErfK/YbiS/YcfS/YnhG TERM 1249 1188031 - 1188007 - R 100 -17.1 -5.4505 | TTCCCCAACAAAAAA GGCCGCCCGGA GGT CCCGGACGGCC AAAACATGAACCTTT TM1040_1106 1189552 - 1188053 - | methylmalonate-semialdehyde dehydrogenase [acylating] TERM 1250 1189815 - 1189827 + G 70 -10.5 -3.53224 | overlap 1189808 TGCCACAGTGGGCCG CCGGG TGG CCCGG TTTGAGGCCGCGCTC TM1040_1107 1189708 - 1190604 + | LysR family transcriptional regulator TM1040_1108 1190660 - 1191094 + | signal-transduction protein TM1040_1109 1191220 - 1191717 + | coenzyme A biosynthesis protein TERM 1251 1191749 - 1191771 + T 93 -10.5 -4.63479 | TTGGAACACTTGGAT CCGGTCTGC CGCGC GCGGGCCGG TTTTGCTTTGTGGTC TM1040_1110 1191928 - 1191785 - | hypothetical protein TERM 1252 1191978 - 1191947 - R 100 -18.1 -4.68103 | GGAAGCCCAATAAAA TACGCCCGGCCAG CTATGC CTGACCGGGCGTA AAATCTCAACCCTCA TM1040_1111 1193008 - 1192007 - | glyceraldehyde-3-phosphate dehydrogenase TERM 1253 1193739 - 1193769 + G 86 -13.4 -3.41878 | opp_overlap 1193743 GGCTGAAATCATGAC GATATCTCTCTCGA CGA TCGAGAGCGATGTC TTGTGGATTCAGGCG TERM 1254 1193917 - 1193931 + G 73 -9.2 -3.91032 | overlap 1193903 1193902 1193916 ACCCGCGCCCTCGGC CGCGGC ATT GTCGCG TTTATGCCGTGGTTC TM1040_1112 1193263 - 1194213 + | hypothetical protein TERM 1255 1194254 - 1194277 + T 100 -16.7 -3.9749 | opp_overlap 1194254 AGACCTGACCAAAAA GGGCGCCCC AAACCC GGGGCGCCC TTTCATCTTCTAACT TERM 1256 1194277 - 1194254 - T 100 -17.4 -4.74132 | opp_overlap 1194254 AGACCTGACCAAAAA GGGCGCCCCA AACC CGGGGCGCCC TTTCATCTTCTAACT TERM 1257 1194345 - 1194319 - T 74 -10.9 -3.63627 | gap 2 GGGGGAGACCCGAAA GGGT-C-GGGGGC AGC GCCCCCAGCACCC GGCTTAGCCCAACAG TM1040_1113 1196370 - 1194349 - | transketolase TERM 1258 1195379 - 1195401 + g 71 -7.6 -4.05714 | opp_overlap 1195381, overlap 1195381 GGCGCCTCAAGGGCA AAGGCCCGGT TGA ACCGGTCCTG TTTCTGCTTGGAAAT TERM 1259 1195399 - 1195381 - G 73 -10.2 -3.66178 | opp_overlap 1195381 1195379 CGCCTCAAGGGCAAA GGCCCGGT TGA ACCGGTCC TGTTTCTGCTTGGAA TERM 1260 1195381 - 1195399 + g 73 -10.2 -3.6217 | opp_overlap 1195381, overlap 1195379 CGCCTCAAGGGCAAA GGCCCGGT TGA ACCGGTCC TGTTTCTGCTTGGAA TM1040_1114 1196728 - 1197648 + | hypothetical protein TERM 1261 1197790 - 1197775 - g 76 -10.4 -3.72576 | TGCTGTCGGATCAAA TCGGGC GGAT GCCCGA GGCGCGGATGCTCTT TM1040_1115 1197648 - 1198193 + | hypothetical protein TERM 1262 1198299 - 1198335 + T 100 -14.6 -4.11216 | gap 1, opp_overlap 1198304, overlap 1198304 AAAGGCCGCGCCACA AAAAAGCCCGCGAGACC CAGA GGTCT-GCGGGCTTTTG TTTTGCGCCTCGCGA TERM 1263 1198330 - 1198304 - T 100 -14.5 -5.24129 | gap 1, opp_overlap 1198304 1198299 CCGCGCCACAAAAAA GCCCGCGAGACC CAGA GGTCT-GCGGGC TTTTGTTTTGCGCCT TERM 1264 1198304 - 1198330 + T 100 -14.5 -5.08255 | gap 1, opp_overlap 1198304, overlap 1198299 CCGCGCCACAAAAAA GCCCGCGAGACC CAGA GGTCT-GCGGGC TTTTGTTTTGCGCCT TM1040_1116 1198718 - 1198356 - | glutaredoxin-like protein TERM 1265 1198385 - 1198410 + g 70 -3.4 -4.64334 | gap 2, overlap 1198379 CGCGGATCTTGTCGG CGGCATC--CTT GTCG AAGCTGATGCCG TTTTGTTCAAACATT TERM 1266 1199052 - 1199023 - R 70 -10.7 -3.27721 | opp_overlap 1199020, overlap 1199021 GAAAATCCGAGAAGA GGGCGATCGCGAC AATG ATCGCAATCGCGC CGCCTATGATCCAGA TM1040_1117 1199322 - 1199086 - | BolA-like protein TERM 1267 1199509 - 1199478 - R 72 -10.8 -3.53811 | gap 1, overlap 1199495 TGGACCGGCCCCAAA GGGGCC-CGCCCAAC ACA GTTGGGCCCGGCACC GCGCAGGCGCGGTGC TERM 1268 1199534 - 1199495 - R 100 -29.4 -3.06696 | overlap 1199478 GGCCCGCCCAACACA GTTGGGCCCGGCACCGCG CAGG CGCGGTGCCGGGCCCAAG GCCGCCAAGGGGGCT TERM 1269 1199573 - 1199592 + r 87 -10 -4.5442 | gap 1, opp_overlap 1199563 GCTAAGGCCCCTCCG GGCGCGGGA GTG TCCC-CGCC TTTTGTGATTAGGCG TM1040_1118 1201766 - 1199601 - | phosphoribosylformylglycinamidine synthase II TERM 1270 1201455 - 1201433 - G 84 -10.6 -4.23054 | opp_overlap 1201431 AGACATCACGCAAAA TGCCGCCA ACACCAG TGGCGGCA CCTTGATAGGGCTCG TERM 1271 1202049 - 1202029 - R 100 -14 -5.75342 | TTGGGCCAAAAAAAA GGCCGAGC ACTAA GCTCGGCC GAAGTCCAACAGGGA TM1040_1119 1203121 - 1202216 - | LysR family transcriptional regulator TERM 1272 1205648 - 1205607 - g 72 -12.3 -3.06815 | gap 1, opp_overlap 1205622 ACCGTCCCGAAGACA TCAGCGCCATCCGGGTCGCC ACC GGCGAGGCGCATG-CGCTGA TCGGCGGCGATCTGG TM1040_1120 1203290 - 1206709 + | indolepyruvate ferredoxin oxidoreductase TERM 1273 1206760 - 1206784 + F 75 -12.7 -3.14132 | opp_overlap 1206751 1206776 TGAATATGTTACCGA GGCCGGGCTAG ATA CACGCCCGGCC TTGGTCGGGGGAGGG TM1040_1121 1206847 - 1207725 + | phospholipid/glycerol acyltransferase TERM 1274 1207737 - 1207714 - f 77 -3 -5.07486 | gap 1, overlap 1207716 1207717 GAGTTCGAAGAAAAA CACCGGGCGTG ACG CGCGCCCG-CA CACCCAAAGGCAGTG TERM 1275 1207736 - 1207716 - f 73 -8.1 -4.16307 | overlap 1207714 1207717 GTTCGAAGAAAAACA CCGGGCGTG ACG CGCGCCCGC ACACCCAAAGGCAGT TERM 1276 1207735 - 1207717 - f 71 -11.6 -3.09061 | overlap 1207716 1207714 TTCGAAGAAAAACAC CGGGCGTG ACG CGCGCCCG CACACCCAAAGGCAG TM1040_1122 1207757 - 1208566 + | glutamate racemase TERM 1277 1208850 - 1208865 + G 71 -7.6 -4.11404 | ACGAAATCGACTTCG CACAGA TCGA TCTGTG TTTCTGTGCTCTGCC argC 1208651 - 1209679 + | N-acetyl-gamma-glutamyl-phosphate reductase TM1040_1124 1209696 - 1210139 + | cytochrome c-type biogenesis protein CcmE TERM 1278 1210163 - 1210201 + F 78 -11.8 -3.53091 | opp_overlap 1210169, overlap 1210169 CATTCTGGTCTGATC TGATAACGCGCCC-GGCG ATCAC CGCCCGGGCGCGTTG-CG TTTGCAGCGCACGGT TERM 1279 1210169 - 1210196 + F 90 -16.3 -3.27525 | gap 1, opp_overlap 1210169, overlap 1210163 GGTCTGATCTGATAA CGCGCCC-GGCG ATCAC CGCCCGGGCGCG TTGCGTTTGCAGCGC TERM 1280 1210196 - 1210169 - f 91 -17 -3.32844 | gap 1, opp_overlap 1210169 1210163 GGTCTGATCTGATAA CGCGCCC-GGCGA TCA CCGCCCGGGCGCG TTGCGTTTGCAGCGC TERM 1281 1210392 - 1210369 - g 82 -11.8 -3.90112 | GGTGGGGCAACCAAA CATGGCGTGA CCAT TCACACCATG CGCCGACTTGGGCTG TM1040_1125 1210282 - 1210890 + | hypothetical protein TM1040_1126 1210900 - 1211436 + | hypothetical protein TERM 1282 1211903 - 1211918 + G 78 -6.8 -4.67904 | GCTCAGTGTGCAATC GGCCAT TGGC GTGGCC TTTTTCGCGTTCATC TERM 1283 1212324 - 1212314 - g 71 -8.2 -4.07885 | overlap 1212315 GATCGTGGTGGAAAA GCGC GAG GCGC TCAAGAGCTGGACCA TERM 1284 1212561 - 1212599 + G 74 -6.7 -4.30635 | gap 1, opp_overlap 1212532, overlap 1212563 GTCAGCCGGGAGAGC GC-GCTGGTGGCCAACAA CCTC TTGCTGGCGGTCAGCTGC TTTGTGGTTTTTGTT TM1040_1127 1211514 - 1213478 + | cytochrome c-type biogenesis protein CcmF TM1040_1128 1213475 - 1213960 + | cytochrome C biogenesis protein TERM 1285 1214378 - 1214396 + G 73 -10.2 -3.64703 | opp_overlap 1214374, overlap 1214380 TCGACCATAAGCGTA TCGCGCGC GCG GCGCGCTA TTTCGATGCGCAGGC TERM 1286 1214380 - 1214394 + G 76 -12.8 -3.40597 | opp_overlap 1214374, overlap 1214378 GACCATAAGCGTATC GCGCGC GCG GCGCGC TATTTCGATGCGCAG TM1040_1129 1214188 - 1214706 + | hypothetical protein TM1040_1130 1214788 - 1215567 + | short chain enoyl-CoA hydratase / enoyl-CoA hydratase TERM 1287 1215592 - 1215623 + T 85 -13 -3.72576 | opp_overlap 1215597, overlap 1215597 TGTTATGATCCCACG AAAAAGCCGCCCCC GATT GAGGGCGGCTTTTG TTTGCTCAAAGACCG TERM 1288 1215597 - 1215618 + T 100 -12.9 -4.93877 | opp_overlap 1215597, overlap 1215592 TGATCCCACGAAAAA GCCGCCCCC GATT GAGGGCGGC TTTTGTTTGCTCAAA TERM 1289 1215618 - 1215597 - T 100 -15.1 -4.7373 | opp_overlap 1215597 1215592 TGATCCCACGAAAAA GCCGCCCCC GATT GAGGGCGGC TTTTGTTTGCTCAAA TM1040_1131 1216653 - 1215643 - | hemolysin-type calcium-binding region TERM 1290 1216916 - 1216894 - R 100 -17.7 -4.54727 | opp_overlap 1216888 TGCTTTAAATGAAAA CGCCGCCCC GAATT GGGGCGGCG CACGCATTTCAGAGA TM1040_1132 1218236 - 1216941 - | citrate synthase TM1040_1133 1219776 - 1218376 - | glutamyl-tRNA synthetase TERM 1291 1218669 - 1218681 + g 70 -3.3 -4.58283 | GGGGGCGTGAGGTCA GCACA AAA TGCGC TTTTTCAAGGAGTTC TERM 1292 1219717 - 1219699 - G 71 -9.5 -3.7175 | overlap 1219701 AAAAAGCCAGTTAAA CAGCGCG GTGCG CGCGCCG CCGATGTGCAAAAAG TERM 1293 1219713 - 1219701 - G 70 -10.5 -3.42684 | overlap 1219699 AAAGCCAGTTAAACA GCGCG GTG CGCGC GCCGCCGATGTGCAA TERM 1294 1221525 - 1221506 - g 72 -12.1 -3.0682 | opp_overlap 1221514 GTGATGACAGAGACA GGGCGCG CGTTGT CGCGCCC AAGCGGCAAGAGTTT TM1040_1134 1219862 - 1221880 + | ComEC/Rec2-related protein TERM 1295 1221928 - 1221900 - T 100 -16 -4.83169 | ACGCCCTGACAAAAA CGCCCGGCCACA GAATA TGCGGCCGAGCG AGAAATGGTGCACGC TM1040_1135 1222679 - 1221954 - | LexA repressor TERM 1296 1222661 - 1222647 - G 71 -6.4 -4.15222 | opp_overlap 1222647 1222653 ACGCTTGTGAATAAA CTCCAG TAG CTGAAG CTGTTTTTTCGTCAG TERM 1297 1222653 - 1222664 + g 78 -2.2 -5.14965 | opp_overlap 1222647, overlap 1222647 GTGAATAAACTCCAG TAGC TGAA GCTG TTTTTTCGTCAGCAT TERM 1298 1222782 - 1222770 - R 75 -2.6 -5.09762 | AGGGGAACATAAAAA GCCC AGCTA AGGC GCAGAGACATCAGAG TM1040_1136 1223978 - 1222806 - | MoeA-likedomain-containing protein moaC 1224452 - 1223982 - | molybdenum cofactor biosynthesis protein C TM1040_1138 1225308 - 1224499 - | indole-3-glycerol-phosphate synthase TM1040_1139 1226005 - 1225301 - | uracil-DNA glycosylase TERM 1299 1225352 - 1225382 + g 78 -13.3 -3.14132 | gap 1 GTCTGCCCACGTGAT CGGC-GGCTCGCCG CGCG CGGTGAGCCAGTCG TTGATCGCCGAGAAC TM1040_1140 1227027 - 1226005 - | anthranilate phosphoribosyltransferase TM1040_1141 1227605 - 1227024 - | anthranilate synthase component II TERM 1300 1229120 - 1229135 + G 74 -6.8 -4.36914 | gap 1, overlap 1229123 GCGCGGGTCAGGACC CGCGCGC CAT GCGC-CG TTTTCTGGACCAGGC TM1040_1142 1227757 - 1229316 + | hypothetical protein TERM 1301 1229355 - 1229382 + T 100 -17.8 -5.48213 | gap 1, opp_overlap 1229355 GAATGTCAAAAAAAA CGCGCTCCACGAG GAT CTCG-GGAGCGCG TTTTTCTTTTCCCTG TERM 1302 1229382 - 1229355 - T 100 -17.8 -5.81032 | gap 1, opp_overlap 1229355 GAATGTCAAAAAAAA CGCGCTCCACGAG GAT CTCG-GGAGCGCG TTTTTCTTTTCCCTG TM1040_1143 1230922 - 1229411 - | anthranilate synthase component I TERM 1303 1230662 - 1230674 + g 70 -10.5 -3.52472 | opp_overlap 1230662, overlap 1230657 GCCCTCGGGATCGAA CCGCG CGG CGCGG TTGATTTCGGCCTGT TM1040_1144 1232781 - 1230946 - | putative peptidyl-prolyl cis-trans isomerse D TERM 1304 1232247 - 1232233 - G 71 -5.6 -4.43213 | opp_overlap 1232242, overlap 1232235 CCGAACATAGGAAAA GCTGCG ACG CGCACC GATATAGTTGGTGAG TM1040_1145 1234120 - 1232945 - | hypothetical protein TERM 1305 1234248 - 1234221 - R 100 -9.9 -5.25805 | opp_overlap 1234221 1234226, overlap 1234226 AACAAAGCCAAAAAA GAAAACGCGCC AACAGG GGCGCGTTTTG TCATTTTCTAAATTG TERM 1306 1234226 - 1234243 + r 91 -9.8 -4.70046 | opp_overlap 1234226 1234221, overlap 1234221 AGCCAAAAAAGAAAA CGCGCC AACAGG GGCGCG TTTTGTCATTTTCTA TERM 1307 1234243 - 1234226 - R 100 -9.8 -5.43553 | opp_overlap 1234221 1234226, overlap 1234221 AGCCAAAAAAGAAAA CGCGCC AACAGG GGCGCG TTTTGTCATTTTCTA TM1040_1146 1234802 - 1234272 - | xanthine-guanine phosphoribosyltransferase TERM 1308 1234347 - 1234329 - G 85 -8.8 -4.62336 | overlap 1234332 ATCCCACGGGAAAAA GATCCAGG TGT CCTGGCTC ACGCCCGTGATAAAG TM1040_1147 1235615 - 1234809 - | enoyl-(acyl carrier protein) reductase TM1040_1148 1235783 - 1236388 + | pyridoxamine 5'-phosphate oxidase TM1040_1149 1236516 - 1237055 + | cold-shock DNA-binding protein family protein TM1040_1150 1237055 - 1237534 + | hypothetical protein TERM 1309 1237525 - 1237537 + F 75 -9.1 -4.13767 | opp_overlap 1237524 1237523 TGAAGCTGCAAAATG GCCCT GTT AGGGC TTTTCAAATCAGAAC TERM 1310 1237869 - 1237850 - f 71 -9.3 -3.85698 | CCCTTTGTTTAGAAA CTGACGC AATCTG GCGTCAG GAGGGGTCAAAATCT TERM 1311 1238042 - 1238056 + F 75 -5.7 -4.52266 | CCTGCGGACAAGCCC CTCTC ATTAC GAGAG TTTTCATCTTTCCTT TERM 1312 1240539 - 1240525 - g 78 -2.7 -5.09426 | opp_overlap 1240525 1240523 GTGAAGTTCAAAAAA CTCGC AGGTG GCGGG TATTTCAAGATCATC TM1040_1151 1238449 - 1242102 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1313 1242378 - 1242402 + F 100 -15 -4.10552 | opp_overlap 1242377 1242376 CTGATCGGCGAAACT GGCCCTCTCC CAATC GGAGGGGGCC TTTGCTTTGGTGAAG TERM 1314 1242427 - 1242448 + F 76 -6.5 -4.65168 | gap 1, overlap 1242421 1242433 1242434 GTGAAGCCGCTGGTC TCCGGCGCGG CAG CAG-GCCGGA TTTTTGCGATCTGAT TERM 1315 1242527 - 1242508 - f 75 -11.4 -3.5002 | overlap 1242522 GTTAAGCATAATGAA CGACCCTG AACA CAGGGCCG GAGTCGCGCGGCCCG TM1040_1152 1242589 - 1243077 + | hypothetical protein TERM 1316 1244571 - 1244555 - g 82 -9.3 -4.33417 | TGGACCGAGAAGAAA GCCGCCG AGG CGGAGGC GACGTTGCGCAAGTG TERM 1317 1244735 - 1244750 + G 76 -9 -4.09685 | overlap 1244725 GGGCTTTTGGCGGCT GGCCAA CTGG TTGGCC TTTTGGGCGATGAGA TM1040_1153 1243613 - 1244986 + | cysteinyl-tRNA synthetase TERM 1318 1245097 - 1245069 - g 85 -2.3 -5.41143 | overlap 1245070 1245072 CACGCTTGAAAAAAA GCAGATCGCCCAG GCC CTTGACGACCTAG GTGTGGACTATATCG TERM 1319 1245115 - 1245150 + G 78 -7.5 -4.65895 | opp_overlap 1245110 1245115 GTGGACTATATCGAA GGCGGCTGGCCG-GGGG CCAA CCCCACCGACAGC-GCC TTTTTCGATGAGGCG TERM 1320 1245462 - 1245493 + G 78 -10 -3.94067 | gap 1, overlap 1245466 TGCGCTGGCGGCCTG CCGTGC-CGCGCTCG ATG CGGGCGCGCGCTGGG TTGTTCTGTGTGATA TM1040_1154 1244983 - 1246611 + | alpha-isopropylmalate/homocitrate synthase family transferase TM1040_1155 1246601 - 1247377 + | hypothetical protein TM1040_1156 1248664 - 1247435 - | major facilitator transporter TM1040_1157 1248737 - 1249369 + | HhH-GPD TM1040_1158 1249366 - 1250031 + | phospholipase/carboxylesterase TM1040_1159 1250512 - 1250051 - | AsnC family transcriptional regulator TERM 1321 1250083 - 1250105 + g 100 -17 -4.02719 | GGATAATCTGAGATT GGGCCCGCTC GAT GAGCGGGCTC TTTGCTATTTGGTCA TM1040_1160 1250605 - 1250919 + | cupin 2, barrel TM1040_1161 1251590 - 1250925 - | ribosomal large subunit pseudouridine synthase E TERM 1322 1251144 - 1251159 + g 72 -2.4 -4.74504 | CATAGCGGCCGTCAT CCGCCG CACC TGCCGG TTTTTGCCTTCGGAT TERM 1323 1252090 - 1252118 + G 79 -8.1 -4.44667 | opp_overlap 1252095, overlap 1252095 GATTTTGTCAAACCC CAAAAGCGCGTGG CCT TCACGCGCTTTAA TTTATTCTTGCGCGA TERM 1324 1252095 - 1252113 + G 95 -12.4 -4.26832 | opp_overlap 1252095, overlap 1252090 TGTCAAACCCCAAAA GCGCGTGG CCT TCACGCGC TTTAATTTATTCTTG TERM 1325 1252113 - 1252095 - g 89 -11.7 -4.24002 | opp_overlap 1252095 1252090 TGTCAAACCCCAAAA GCGCGTG GCCTT CACGCGC TTTAATTTATTCTTG TERM 1326 1252330 - 1252306 - g 70 -10.6 -3.53091 | ATGTCCCTGCGCAAA CCGCCGCGCC GTCCG GGCGCGGAAG AGCTGCGCAATATGG TM1040_1162 1251838 - 1252422 + | HNH endonuclease TERM 1327 1252470 - 1252440 - T 95 -11.2 -4.65895 | opp_overlap 1252445, overlap 1252445 CCCTTGATTTAAAAA GAAAAGCGCGCC ATCGAGG GGCGCGCTTTTG TCGTCAGGCCTTGGC TERM 1328 1252465 - 1252445 - T 100 -11.1 -5.2853 | opp_overlap 1252445, overlap 1252440 GATTTAAAAAGAAAA GCGCGCC ATCGAGG GGCGCGC TTTTGTCGTCAGGCC TERM 1329 1252445 - 1252465 + T 91 -11.1 -4.46212 | opp_overlap 1252445 1252440 GATTTAAAAAGAAAA GCGCGCC ATCGAGG GGCGCGC TTTTGTCGTCAGGCC TM1040_1163 1253520 - 1252474 - | ornithine cyclodeaminase TERM 1330 1252787 - 1252802 + g 71 -8.2 -4.07687 | GACCGGTTGAGGATC CCGGGC GCAA GCTCGG TTTTGCCGGGGCAGT TM1040_1164 1254446 - 1253517 - | amidinotransferase family protein TM1040_1165 1255372 - 1254443 - | arginase TM1040_1166 1255482 - 1255913 + | AsnC family transcriptional regulator TERM 1331 1255915 - 1255930 + T 93 -10.4 -4.57569 | opp_overlap 1255903 1255904 ATAGTCGCGTCTAAG CGCCTG GGGT CAGGCG TTTTTGCGCGCGTGA TM1040_1167 1256397 - 1255924 - | disulphide bond formation protein DsbB TERM 1332 1256194 - 1256164 - G 79 -12.5 -3.54129 | GACACCCGCGTGAAA GGCCCCAATCGCC GAGGT GGCGAGTGCGGCC ACCGCGCCGAGATAG TM1040_1168 1256972 - 1256394 - | DedA family protein TERM 1333 1257252 - 1257273 + r 100 -13.7 -4.7629 | opp_overlap 1257252 TTTTGCATGAGAAAA CCGCCGGTC GTAA GATCGGCGG TTTTTCAGTTCCTGG TERM 1334 1257273 - 1257252 - R 91 -11.5 -4.46212 | opp_overlap 1257252 TTTTGCATGAGAAAA CCGCCGGTC GTAA GATCGGCGG TTTTTCAGTTCCTGG TM1040_1169 1259133 - 1257343 - | diguanylate cyclase with GAF sensor TM1040_1170 1261216 - 1259585 - | acyl-CoA synthetase TERM 1335 1261080 - 1261068 - G 78 -4.7 -4.82901 | GCGCGTGCATAAAAA GCGGC GTA GCTGC GTCGAAGGGGGCCGT TM1040_1171 1262021 - 1261221 - | enoyl-CoA hydratase TM1040_1172 1262481 - 1262032 - | OsmC-like protein TM1040_1173 1263646 - 1262504 - | glycine cleavage T protein (aminomethyl transferase) TERM 1336 1262627 - 1262642 + g 79 -9 -4.17048 | GTGTTCGGCGTCCAC CATCGC CAGG GCGATG TTCTTTTCAAGGCGC TM1040_1174 1264339 - 1263806 - | AsnC family transcriptional regulator TM1040_1175 1264744 - 1265736 + | TRAP transporter solute receptor TAXI family protein TM1040_1176 1266737 - 1265730 - | hypothetical protein TM1040_1177 1269228 - 1266814 - | hypothetical protein TERM 1337 1268216 - 1268192 - G 85 -5.7 -5.03314 | gap 1, overlap 1268194 TGCAGCGCCAAAAAA GC-CTGCAGC CCTGCC GCCGCAGTGC CTACGGCCGTCATCG TERM 1338 1269202 - 1269172 - G 78 -4.7 -4.81083 | gap 2 GGCAACCAGCAAAAA GAGCTGCAACGGCGC CCG GCGCCAATG--GCTC AGGAAGCAATAGAGC TM1040_1178 1269887 - 1269225 - | ABC transporter related TERM 1339 1270097 - 1270126 + G 88 -13.6 -3.60234 | ATGCTTTTGTGGTGT GCGGATGCGCTG CGACGC CATCGCATCCGC TTTCAACGTCTCTCG TM1040_1179 1270013 - 1270456 + | Ion transport 2 TM1040_1180 1270487 - 1271353 + | ribonuclease BN, putative TERM 1340 1271603 - 1271588 - g 89 -11.8 -4.18018 | CCGCGCGACTGAAAA GCCCGG CATG CCGGGC GCAAGCAACAGTGAT TM1040_1181 1271442 - 1271687 + | hypothetical protein TM1040_1182 1272434 - 1271718 - | ribosomal RNA methyltransferase RrmJ/FtsJ TERM 1341 1272218 - 1272206 - G 76 -10.5 -3.77588 | AGCCCAGATCAACAA CCCGG GCC CCGGG CACAAGAAAGCGGTA TM1040_1183 1273631 - 1272519 - | Ppx/GppA phosphatase TM1040_1184 1273898 - 1274194 + | hypothetical protein TM1040_1185 1274224 - 1275156 + | metF protein-like TM1040_1186 1275160 - 1276218 + | methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase TERM 1342 1276246 - 1276280 + F 91 -14.4 -3.76492 | opp_overlap 1276254, overlap 1276254 AATTACCTGACAATA TTTAAAAAGCCGGGCG CAG CGCTCGGCTTTTTGCA TTTGGTCCGCTTGGG TERM 1343 1276254 - 1276272 + F 100 -13.8 -4.82855 | opp_overlap 1276254, overlap 1276246 GACAATATTTAAAAA GCCGGGCG CAG CGCTCGGC TTTTTGCATTTGGTC TERM 1344 1276272 - 1276254 - f 100 -11.6 -4.76312 | opp_overlap 1276254 1276246 GACAATATTTAAAAA GCCGGGCG CAG CGCTCGGC TTTTTGCATTTGGTC TERM 1345 1276377 - 1276403 + F 86 -3.8 -5.42259 | TCCGGCACACCGCAT TCCTGCAA TAAATTTCAGT TTGCAGGA TTTTTTTCGCGATGA TM1040_1187 1276546 - 1277559 + | sugar ABC transporter (sugar-binding protein) TM1040_1188 1277641 - 1279176 + | ABC transporter related TERM 1346 1279850 - 1279865 + G 70 -4.7 -4.56597 | opp_overlap 1279860, overlap 1279850 CTATTCCGGCATCCG CACCA AGAAGG TGGTG TTTTTGACCACGACG TM1040_1189 1279188 - 1280183 + | inner-membrane translocator TERM 1347 1280521 - 1280470 - g 73 -4.8 -4.66609 | gap 1 GAGGGCAGCGAAAAA GCGACGCTG-CAGCAGGTTGGCCGC GCT GCGGCTAGCCACCTGACCGAGACGC TGCGCGATGGCGATG TERM 1348 1280804 - 1280818 + G 72 -11.4 -3.31263 | TCGATCTGGCCCGTC GCGCCA ATG TGGCGC TTGTGGGGATCGGCT TM1040_1190 1280191 - 1281171 + | DeoR family transcriptional regulator TM1040_1191 1281161 - 1282156 + | aldo/keto reductase TERM 1349 1282216 - 1282195 - f 74 -6.6 -4.45485 | gap 1, overlap 1282197 ATGACATGCACAAAA CGCTG-CGA CGACC TCGTCAGCG CACGGAGAAGATATG TERM 1350 1282264 - 1282252 - g 73 -4.7 -4.7078 | opp_overlap 1282252 1282260, overlap 1282261 TCAACGAGTGAAAAA CTGGC AAA GCCTG TCTGGTGACGGGGCC TERM 1351 1283005 - 1282974 - g 71 -9.2 -3.72576 | CCTGGCTGGATGAAA CCGTGGCGCAGCTC GGCG GGACGGCGCCGCGG ATGGTGGAGGGCACC TM1040_1192 1282229 - 1283944 + | FAD dependent oxidoreductase TERM 1352 1284256 - 1284234 - g 76 -9.1 -4.11484 | GTCAATGCTGCAAAA CGCCGAAGA GCCCA TCATCGGCG CCCTTGAGATGGATG TM1040_1193 1283941 - 1284777 + | deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase TM1040_1194 1284794 - 1286305 + | carbohydrate kinase, FGGY TM1040_1195 1286318 - 1286605 + | antibiotic biosynthesis monooxygenase TERM 1353 1286666 - 1286635 - f 88 -16.5 -3.15544 | overlap 1286637 GTCGAGCCGGACCAA TACCGCGGGCCGC AGACAG GCGGCCCGCGGCT CCGTGAAACATTGAA TERM 1354 1286664 - 1286637 - f 100 -21.3 -3.14051 | overlap 1286635 CGAGCCGGACCAATA CCGCGGGCCGC AGACAG GCGGCCCGCGG CTCCGTGAAACATTG TM1040_1196 1286849 - 1287859 + | AraC family transcriptional regulator TM1040_1197 1288124 - 1288369 + | hypothetical protein TERM 1355 1288587 - 1288621 + F 82 -15 -2.93723 | overlap 1288555 1288584 GGCCGCACCACCTGA GGCCCGGCTCTATG CCTGTCC CGCAGAGCCGGGCC TATCCTTGATCGACG TM1040_1198 1288731 - 1289417 + | hypothetical protein TM1040_1199 1289858 - 1290730 + | hypothetical protein TERM 1356 1290841 - 1290867 + F 100 -12.9 -4.81212 | opp_overlap 1290834, overlap 1290842 1290850 GTCCAAAAGCCCGCA TCCCGGCCCGG AATCC CCGCGCCGGGG TTTTATTGTCATACC TERM 1357 1290842 - 1290866 + F 85 -14.2 -3.48004 | opp_overlap 1290834, overlap 1290841 1290850 TCCAAAAGCCCGCAT CCCGGCCCGG AATCC CCGCGCCGGG GTTTTATTGTCATAC TERM 1358 1291395 - 1291376 - g 71 -9.2 -3.84451 | GCGCCGAAAGCCAAA GCTGCTGC ACCT GCAGCCGC AGGCTCCGACGATCT TM1040_1200 1290983 - 1291579 + | fused 50S ribosomal protein L21/unknown domain-containing protein rpmA 1291592 - 1291861 + | 50S ribosomal protein L27 TERM 1359 1291891 - 1291918 + F 95 -12 -4.62475 | GTAATAAAATCTTTA GGGGGATCGGTT AAAA GACCGGTCCCTC TTTTCGTTTCTGGAT TM1040_1202 1292084 - 1292620 + | GCN5-related N-acetyltransferase TERM 1360 1292645 - 1292672 + F 100 -16.2 -4.83169 | AGCAGGCGGTATCAT CGCGGGCGCGCC ACCG GGCGGGTCCGCG TTTTTATGCCGGGCT obgE 1292795 - 1293841 + | GTPase ObgE TM1040_1204 1293829 - 1294935 + | gamma-glutamyl kinase TERM 1361 1295351 - 1295391 + G 88 -19.7 -2.95789 | opp_overlap 1295342 1295350, overlap 1295348 1295345 GACGAATGGACACAG CCCAGCGGTTTGCGCATTC AGC GCGTGCGCACGCCGCTGGG TGTCATTGGTGTGAT TERM 1362 1296087 - 1296100 + G 77 -3.8 -4.9792 | opp_overlap 1296085, overlap 1296085 TTACCGAGAATGATG CTGC CGTGGC GCAG TTTTTCTCTGAGCTC TM1040_1205 1294988 - 1296292 + | glutamate-5-semialdehyde dehydrogenase TERM 1363 1296353 - 1296332 - T 100 -15.9 -4.81249 | opp_overlap 1296332 GCTGAAACGCAAAAA CGCCGCTGA GAGA TCAGCGGCG TTTTTCATAGGTATG TERM 1364 1296332 - 1296353 + T 100 -15.9 -4.76041 | opp_overlap 1296332 GCTGAAACGCAAAAA CGCCGCTGA GAGA TCAGCGGCG TTTTTCATAGGTATG TM1040_1206 1296974 - 1296378 - | hypothetical protein TM1040_1207 1297004 - 1297186 + | hypothetical protein TM1040_1208 1297294 - 1298055 + | ornithine-acyl[acyl carrier protein] N-acyltransferase TERM 1365 1298688 - 1298676 - g 70 -10.5 -3.54424 | opp_overlap 1298675 1298676 TTTGATGCCCCCAAA GGCGC CGA GCGCC GGTTTTATGGCTGGT TM1040_1209 1298052 - 1298912 + | lyso-ornithine lipid acyltransferase rpsB 1299082 - 1299852 + | 30S ribosomal protein S2 tsf 1299933 - 1300808 + | elongation factor Ts TERM 1366 1300862 - 1300837 - T 81 -14.7 -3.0782 | opp_overlap 1300837 TAAGTGTTGAAGAGA CCCCCGTAACC TTAT GGTTGCGGGGG TTTTTCTATTTGATC TERM 1367 1300837 - 1300862 + T 100 -16.9 -5.22289 | opp_overlap 1300837 TAAGTGTTGAAGAGA CCCCCGTAACC TTAT GGTTGCGGGGG TTTTTCTATTTGATC TM1040_1212 1302017 - 1301262 - | LuxR family transcriptional regulator TM1040_1213 1302514 - 1302014 - | hypothetical protein TERM 1368 1303258 - 1303248 - g 74 -5.4 -4.53034 | CCGATACAATCAAAA GGAT CGA ATCC CGCCTGGACGCCGCA TM1040_1214 1302602 - 1303312 + | enoyl-CoA hydratase/isomerase TM1040_1215 1304461 - 1304000 - | response regulator receiver protein TM1040_1216 1306760 - 1304451 - | multi-sensor signal transduction histidine kinase TERM 1369 1305150 - 1305177 + g 79 -9.2 -4.24002 | gap 1 CTCGAGATCCTTGTT GGACC-GGTTGAG CTG CTCGATCAGGTCC TTTTGAGATTTCGAC TM1040_1217 1307941 - 1307375 - | twin-arginine translocation pathway signal TERM 1370 1307950 - 1307965 + H 79 -4 -5.07652 | gap 1 CTGTCATCGTGATGA GCGT-TG TCC CATACGC TTTTGTTTTCACACG TERM 1371 1308539 - 1308505 - g 75 -13.7 -2.89564 | gap 2, overlap 1308507 1308512 TTTGGACCGCAGACA CACCAGAGGCGACGGCG CGG CGCCGT-GCC-CTGATG CAGGCGCTCGAAGAG TERM 1372 1308533 - 1308512 - g 70 -12.3 -2.90797 | gap 1, overlap 1308507 1308505 CGCAGACACACCAGA GGCGACGGCG CGG CGCCGT-GCC CTGATGCAGGCGCTC TM1040_1218 1308297 - 1309919 + | peptidoglycan binding domain-containing protein TM1040_1219 1309957 - 1311030 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TM1040_1220 1311082 - 1311339 + | phosphopantetheine-binding TM1040_1221 1311374 - 1312582 + | 3-oxoacyl-[acyl-carrier-protein] synthase II TERM 1373 1312709 - 1312662 - T 100 -23 -2.82015 | gap 1, opp_overlap 1312665 1312671, overlap 1312671 CTCATATCGACCAGA CATTAAAAAGCCCCGCCTGATCG ATA CG-TCAGGCGGGGCTTCTTATTG TTAGGCCAGAGGCTT TERM 1374 1312665 - 1312706 + T 100 -21.1 -3.61398 | gap 1, opp_overlap 1312662 1312671, overlap 1312671 ATATCGACCAGACAT TAAAAAGCCCCGCCTGATCG ATA CG-TCAGGCGGGGCTTCTTA TTGTTAGGCCAGAGG TERM 1375 1312671 - 1312700 + T 100 -20.1 -4.09963 | gap 1, opp_overlap 1312662 1312671, overlap 1312665 ACCAGACATTAAAAA GCCCCGCCTGATCG ATA CG-TCAGGCGGGGC TTCTTATTGTTAGGC TERM 1376 1312700 - 1312671 - T 100 -20.1 -4.85129 | gap 1, opp_overlap 1312671 1312665, overlap 1312662 ACCAGACATTAAAAA GCCCCGCCTGATCG ATA CG-TCAGGCGGGGC TTCTTATTGTTAGGC TM1040_1222 1313358 - 1312723 - | invasion associated locus B TERM 1377 1313596 - 1313581 - H 100 -11.8 -5.26875 | opp_overlap 1313581 GGTGCAACGAAAAAA GGGGGC CGAA GCCCCC TTTTTGCGTCTACAT TERM 1378 1313581 - 1313596 + H 100 -11.8 -4.71061 | opp_overlap 1313581 GGTGCAACGAAAAAA GGGGGC CGAA GCCCCC TTTTTGCGTCTACAT TERM 1379 1313829 - 1313809 - H 100 -14 -6.02914 | GCGAGATAAAAAAAA GGCCGTGC GCGAG GCACGGCC AGTCTGACAGGGAGG TERM 1380 1314522 - 1314565 + G 72 -11.6 -3.34398 | opp_overlap 1314549 1314550, overlap 1314519 1314523 1314525 1314539 1314552 TTCGATCGGCGCCAT CCAGCGCCGCCTGCTGGTTC TGGA GAACCAGGGCGGGGCGCTGA TCTTTGGCGAGCCGG TERM 1381 1314523 - 1314564 + G 76 -15.1 -2.60496 | opp_overlap 1314549 1314550, overlap 1314522 1314519 1314525 1314539 1314552 TCGATCGGCGCCATC CAGCGCCGCCTGCTGGTTC TGGA GAACCAGGGCGGGGCGCTG ATCTTTGGCGAGCCG TM1040_1223 1313953 - 1315497 + | protein of unknown function DUF853, NPT hydrolase putative TERM 1382 1315533 - 1315506 - T 100 -17.1 -4.65895 | opp_overlap 1315506 GCGCTGATGTAAAAA GAGCCGGAACC TCAGTG GGTTCCGGCTC TTTCTTTGTCTGTGA TERM 1383 1315506 - 1315533 + T 100 -17.8 -4.65722 | opp_overlap 1315506 GCGCTGATGTAAAAA GAGCCGGAACCT CAGT GGGTTCCGGCTC TTTCTTTGTCTGTGA TM1040_1224 1317007 - 1315559 - | inosine-5'-monophosphate dehydrogenase TERM 1384 1317311 - 1317334 + G 73 -10.2 -3.57561 | overlap 1317330 AAGGTGGAACGCCCT GGCGTTGGTG ACGA CACCCGCGCC TTTCCGCCGTTCAAA TM1040_1225 1317194 - 1318342 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 1385 1318655 - 1318641 - g 73 -10 -3.57561 | overlap 1318644 GGTGAATTCTCGAAA CACGGT GTC ACCGTG GCCGATGACGCCCTG TERM 1386 1318778 - 1318761 - g 81 -5.5 -4.74706 | GCGAAGATCGAAAAA GACGTGG TGAT CGACGTC CCGGCCGAGAGCCAG TM1040_1226 1318425 - 1320509 + | ferredoxin TERM 1387 1320773 - 1320752 - g 79 -9.4 -4.25104 | opp_overlap 1320755 TTTGCCGGATCAAAA GACCGCGC CGCGGT GCGCGATC ACGTCTATCAGGCGC TM1040_1227 1320632 - 1321807 + | Fmu (Sun) TM1040_1228 1321904 - 1324213 + | multi-sensor hybrid histidine kinase TM1040_1229 1324903 - 1324244 - | hypothetical protein recA 1325036 - 1326109 + | recombinase A TERM 1388 1326158 - 1326184 + G 93 -14.5 -3.79071 | gap 1 CGCTGCCGCATGTGA TGGCCGCCCCGA AGGA TCGGG-CGGCCA TTTCCATGTTGTGCC TERM 1389 1326593 - 1326573 - g 82 -9.7 -4.386 | opp_overlap 1326571 1326568 GAACCGGCCAGAAAA CCGCGCA TTGCGGC TGCGCGG AATTCTCTGTTCCGT TM1040_1231 1326112 - 1326660 + | hypothetical protein TERM 1390 1326672 - 1326655 - f 81 -3.4 -5.1861 | opp_overlap 1326655 CTTATGATCAAAAAA CAGTGA CCAACC CCACTG TTTTCCTTGGGAATA alaS 1326722 - 1329430 + | alanyl-tRNA synthetase TM1040_1233 1329437 - 1329724 + | hypothetical protein TERM 1391 1329754 - 1329776 + F 100 -14.8 -4.81083 | opp_overlap 1329753 1329752 1329747 GCAAAACAGAAGATT GGGCTGCGCG TTT CGCGTGGCCC TTTTTCGTGATTAAC TM1040_1234 1329844 - 1330620 + | glutamine amidotransferase, class-II TERM 1392 1330670 - 1330637 - T 88 -18.3 -2.74501 | opp_overlap 1330642, overlap 1330642 ACCAAGCGCTCAAAT GAAAAGGCCCGGTCA GTTT TGACCGGGCCTTTTT GCATTTCTGAGGGGG TERM 1393 1330642 - 1330665 + T 100 -18.2 -4.84529 | opp_overlap 1330637 1330642 GCGCTCAAATGAAAA GGCCCGGTCA GTTT TGACCGGGCC TTTTTGCATTTCTGA TERM 1394 1330665 - 1330642 - T 100 -18.2 -4.54727 | opp_overlap 1330642, overlap 1330637 GCGCTCAAATGAAAA GGCCCGGTCA GTTT TGACCGGGCC TTTTTGCATTTCTGA TM1040_1235 1332509 - 1330689 - | GTP-binding protein TypA TERM 1395 1332097 - 1332085 - G 71 -5.5 -4.39407 | overlap 1332088 GCAAACAAGTCAAAA CACTC GTC GAGCG CGCGGTCGGGCTCGG TM1040_1236 1332965 - 1332636 - | small multidrug resistance protein TM1040_1237 1334272 - 1333106 - | HD domain-containing protein TM1040_1238 1334517 - 1334269 - | hypothetical protein TM1040_1239 1335170 - 1334517 - | hypothetical protein TM1040_1240 1335357 - 1335815 + | BadM/Rrf2 family transcriptional regulator TERM 1396 1336608 - 1336623 + G 80 -3.2 -5.06414 | overlap 1336604 1336610 AAGGCGGTTGCGGCC CAGTGC CCGG GCACTA TTTTTATTGGCAACG TM1040_1241 1335882 - 1336925 + | aminotransferase, class V TM1040_1242 1336941 - 1338461 + | cysteine desulfurase activator complex subunit SufB TM1040_1243 1338500 - 1338814 + | hypothetical protein TM1040_1244 1338827 - 1339591 + | methyltransferase FkbM TERM 1397 1340209 - 1340250 + G 76 -12.9 -3.30474 | gap 1, opp_overlap 1340207, overlap 1340236 1340245 GACGCGATGAAACTG GTCGCGGACGGCGTCAACGC GCT GCGT-GACGAAGGCCGCGGC TTCCTCGTTATCACC TM1040_1245 1339654 - 1340409 + | FeS assembly ATPase SufC TERM 1398 1340587 - 1340610 + G 95 -13.8 -4.09685 | opp_overlap 1340567 1340564 1340562, overlap 1340593 CGGACACGCTGACCG CGGCAGACGC GCCT GCGGCTGCCG TTTTCGACAGTGGCG TERM 1399 1340624 - 1340664 + G 88 -7.4 -4.87665 | overlap 1340593 CGTTTTCGACAGTGG CGAGGCGCCGATGTTCGA CAACT TCGACCGGCTGCGCATCG TTTTTGTAGATGGCG TERM 1400 1341344 - 1341354 + G 71 -8.2 -4.09685 | GGTCCTGCGCAACGG CGCC ACC GGCG TTTTCCAGGGTAAGA TM1040_1246 1340409 - 1341689 + | SufBD TERM 1401 1341736 - 1341758 + G 86 -14.9 -3.39327 | opp_overlap 1341730 1341720, overlap 1341755 GGCGACATATCGGGG GCCGCGCAA GGTGA TTGCGCGGC TTCTCGCTATGGGGC TERM 1402 1341772 - 1341788 + G 70 -4.4 -4.4595 | gap 1, opp_overlap 1341720, overlap 1341755 GCTTCTCGCTATGGG GCCGCGT GAAG AC-CGGC TTTTGGCTTTTGTAA TM1040_1247 1341698 - 1342183 + | hypothetical protein TM1040_1248 1342183 - 1342761 + | hypothetical protein TERM 1403 1343337 - 1343315 - g 70 -4.7 -4.49344 | AAATCCATCACAAAA GGCGCGCAT GACAA AGGCGTGCC AGTGCTTGTCGACGG TM1040_1249 1342754 - 1343974 + | cysteine desulfurase TERM 1404 1344137 - 1344100 - T 85 -14.4 -3.44672 | gap 1, opp_overlap 1344104 1344109, overlap 1344109 GCCCATGAAAACAGA CAAAAAAAACGCGCTCC GGTTT GGAGCGCGTTTTCTT-G AATTTGATGTTGGTT TERM 1405 1344104 - 1344134 + T 86 -14.8 -3.3323 | opp_overlap 1344100 1344109, overlap 1344109 ATGAAAACAGACAAA AAAAACGCGCTCCG GTT TGGAGCGCGTTTTC TTGAATTTGATGTTG TERM 1406 1344129 - 1344109 - T 100 -14 -6.08563 | opp_overlap 1344104 1344109, overlap 1344100 AACAGACAAAAAAAA CGCGCTCC GGTTT GGAGCGCG TTTTCTTGAATTTGA TERM 1407 1344109 - 1344129 + T 100 -14.7 -4.75309 | opp_overlap 1344109 1344100, overlap 1344104 AACAGACAAAAAAAA CGCGCTCCG GTT TGGAGCGCG TTTTCTTGAATTTGA TM1040_1250 1344583 - 1344152 - | hypothetical protein TM1040_1251 1347180 - 1344583 - | TRAP transporter, 4TM/12TM fusion protein TERM 1408 1345249 - 1345237 - G 77 -3.3 -4.9218 | overlap 1345246 1345247 GATCGAGTAGAAAAA CGCCT GAA AGCCG GTGCGCAGCGGATCA TERM 1409 1347259 - 1347225 - R 100 -14.3 -4.54727 | opp_overlap 1347226, overlap 1347226 TTGTTGAAACGAAAA CGGCTCCCGCCCCTT AAAGA AAGGGGCGAAAGCCT TTGATTTCACGAAAG TERM 1410 1347258 - 1347226 - R 91 -17.8 -3.32354 | opp_overlap 1347226, overlap 1347225 TGTTGAAACGAAAAC GGCTCCCGCCCCTT AAAGA AAGGGGCGAAAGCC TTTGATTTCACGAAA TERM 1411 1347226 - 1347258 + r 95 -13.4 -4.05788 | opp_overlap 1347226 1347225 TGTTGAAACGAAAAC GGCTCCCGCCCCTT AAAGA AAGGGGCGAAAGCC TTTGATTTCACGAAA TERM 1412 1347292 - 1347274 - R 77 -10.4 -3.74693 | overlap 1347277 TTTGATTTCACGAAA GAAGTGAT TGG ATCACTTC CAGCCGCGCTCTTTG TM1040_1252 1348257 - 1347286 - | TRAP transporter solute receptor TAXI family protein TM1040_1253 1349239 - 1348352 - | RpiR family transcriptional regulator TERM 1413 1349272 - 1349283 + H 77 -3 -5.16237 | CTCCTGTTGCGATTA TAAC GAAC GTTA TTTTTTGCTCACATT TERM 1414 1350712 - 1350725 + G 71 -5.9 -4.41348 | overlap 1350709 TGGTCAGGTCTACGG GTGGG AACG CCCGC TTTATTTCGGAAGGA TM1040_1254 1349387 - 1351786 + | FAD dependent oxidoreductase TERM 1415 1351861 - 1351830 - T 79 -7.2 -4.59853 | opp_overlap 1351831, overlap 1351831 GTAATTTTGCAAAAA CGCACCCCAAACCC CACC AGATTGGGGGTGCT TGGATGAGATACCGC TERM 1416 1351860 - 1351831 - T 70 -10.7 -3.3543 | opp_overlap 1351831, overlap 1351830 TAATTTTGCAAAAAC GCACCCCAAACCC CACC AGATTGGGGGTGC TTGGATGAGATACCG TERM 1417 1352067 - 1352094 + T 70 -9.9 -3.38951 | overlap 1352073 TCATACCTCTTAATC GCAGAGCCGCT GGCCTA AGCGGTTTTGC TTCCTGTGTTAATCC TERM 1418 1352073 - 1352088 + T 72 -6.1 -4.48333 | overlap 1352067 CTCTTAATCGCAGAG CCGCT GGCCTA AGCGG TTTTGCTTCCTGTGT TERM 1419 1352183 - 1352223 + T 95 -13.4 -4.60889 | gap 1, opp_overlap 1352188 1352190, overlap 1352190 GTCGCGGAATCCCCG CAAAATAGCCGCCCTTGCA TTCC TGCAAGGGCGGCT-TTGCG TTTTTGAGCCTCGTT TERM 1420 1352219 - 1352188 - T 100 -18.8 -4.09739 | opp_overlap 1352183 1352190, overlap 1352190 GGAATCCCCGCAAAA TAGCCGCCCTTGCA TTCC TGCAAGGGCGGCTT TGCGTTTTTGAGCCT TERM 1421 1352217 - 1352190 - T 100 -21.4 -3.64488 | opp_overlap 1352183 1352190, overlap 1352188 AATCCCCGCAAAATA GCCGCCCTTGCA TTCC TGCAAGGGCGGC TTTGCGTTTTTGAGC TERM 1422 1352190 - 1352217 + T 100 -21.4 -3.99805 | opp_overlap 1352190 1352188, overlap 1352183 AATCCCCGCAAAATA GCCGCCCTTGCA TTCC TGCAAGGGCGGC TTTGCGTTTTTGAGC TM1040_1255 1353467 - 1352244 - | acyl-CoA dehydrogenase-like TERM 1423 1353310 - 1353320 + g 72 -2.4 -4.81551 | TAGGCCTCAGTCACA CGGC TTT GCAG TTTTTCCTGTGCGTA TERM 1424 1353606 - 1353639 + G 89 -15.9 -3.31263 | overlap 1353634 1353636 CGATTGCGTCCCTCC GCGCGCTGGAGGCGG TTGA CCGCCTCGGGAGCGC TTCTGCGGCTGCGGT TERM 1425 1353924 - 1353969 + G 100 -14.1 -4.35524 | gap 1 TGCCGGCGTTCTCAC GGCGACATCCGGATGTGACA ATCAATA TGTC-CACCCGGTTGTCGCC TTTTAACTTTGCAAC TERM 1426 1354045 - 1354064 + G 76 -9.3 -4.13728 | GGGGACGGATTCTCT GCTGCTC AAGCAC GAGCAGC TTTTGCCGGTCTGTG TM1040_1256 1353542 - 1354474 + | LysR family transcriptional regulator TERM 1427 1354517 - 1354496 - T 100 -17.3 -4.65895 | TGTTTGATGGAAAAA CGGCTCCGG AAAA CCGGAGCCG CAATAAATCGTTACA TM1040_1257 1355243 - 1354554 - | two component transcriptional regulator TM1040_1258 1355957 - 1355247 - | phosphate uptake regulator, PhoU TERM 1428 1355351 - 1355373 + g 78 -2.7 -5.0538 | gap 1, overlap 1355353 CTGCGATCGCGGTGA CAT-GATCGC CCAT GCGTTCGATG TTTTTTGCAATAAAG TM1040_1259 1356771 - 1355974 - | phosphate ABC transporter permease TM1040_1260 1358151 - 1356784 - | phosphate ABC transporter permease TM1040_1261 1359629 - 1358151 - | phosphate ABC transporter permease TERM 1429 1359715 - 1359689 - R 100 -14.4 -4.06055 | opp_overlap 1359685 1359685 1359707 ACTTTTGAAACGAAA GGCCGGGACG TCATATC CGCCCCGGCC TGAACTTTACATGCG TM1040_1262 1360779 - 1359739 - | phosphate ABC transporter, periplasmic phosphate-binding protein TM1040_1263 1362121 - 1361081 - | histidine kinase TERM 1430 1361875 - 1361920 + g 73 -10.3 -3.59979 | opp_overlap 1361905, overlap 1361863 1361876 GGGTCACTTCAAAGG TGGTGTCCTGCGCGCCATCAT TGGA AAGATGGCGCGCGGTGCGCGG TTTGCGGTCCAGAAG TM1040_1264 1363356 - 1362175 - | cystathionine gamma-synthase TM1040_1265 1363880 - 1363359 - | hexapaptide repeat-containing transferase TERM 1431 1363512 - 1363545 + g 70 -3.7 -4.62302 | overlap 1363515 AGGGATCTCCTTATT CTCGGTGATCAGGGC GCCC GCCCCGATCAGGCAG TTTTTACCGATCTTG TM1040_1266 1364530 - 1363877 - | guanylate kinase TM1040_1267 1365442 - 1364546 - | hypothetical protein TERM 1432 1366360 - 1366347 - g 75 -8.1 -4.25056 | opp_overlap 1366347 GATCTCACGAACAAA CCGGT GAGT ACCGG TGGTTTCAGCGAGCC TERM 1433 1366605 - 1366593 - g 71 -6.9 -4.20918 | opp_overlap 1366598 GGCAAGCTGAAGAAA GGCGC GTC GCACC TGCGTCTTGTGGTTT TM1040_1268 1365684 - 1366631 + | hypothetical protein TERM 1434 1366706 - 1366738 + T 93 -10.7 -4.65895 | gap 2, opp_overlap 1366704 1366720 1366723, overlap 1366708 AGACCTTGAAGCATT G-ACGCCCG-AACGC AGAAC GCGTTTCGGGCGTTC TTTTTGCGTGCAAGG TERM 1435 1366708 - 1366735 + T 95 -13.5 -4.44608 | gap 1, opp_overlap 1366704 1366720 1366723, overlap 1366706 ACCTTGAAGCATTGA CGCCCG-AACGC AGAAC GCGTTTCGGGCG TTCTTTTTGCGTGCA TERM 1436 1366835 - 1366816 - T 100 -15 -5.60993 | opp_overlap 1366816 GCCCGGATAAAAAAA GGCCCGCA AAGC TGCGGGCC TTTTGAAATGCTGCG TERM 1437 1366816 - 1366835 + T 100 -15 -4.15565 | opp_overlap 1366816 GCCCGGATAAAAAAA GGCCCGCA AAGC TGCGGGCC TTTTGAAATGCTGCG TM1040_1269 1368231 - 1366861 - | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase TERM 1438 1367575 - 1367595 + g 71 -8.9 -3.74693 | CAGCGTATGAGCATT GTCGGCGGT CAC ACCGGCGGC TTTCATGAAGTCGAG TM1040_1270 1368432 - 1369436 + | transcriptional regulator TM1040_1271 1370549 - 1369443 - | glucose sorbosone dehydrogenase TERM 1439 1370731 - 1370698 - g 90 -4.5 -5.38497 | gap 1, opp_overlap 1370729 1370730, overlap 1370699 1370700 ATTCAAATGAAAAAA CTGCTGACCGCGACGG CAG CCATCGCATTGAGC-G CTGGCACCGCGTTTG TM1040_1272 1370689 - 1371888 + | extracellular ligand-binding receptor TERM 1440 1372377 - 1372363 - g 74 -12.8 -3.1372 | overlap 1372361 CATCGCCGATGAAGA GCGCGC CCT GCGCGC CAAAGCAGATGAGGT TM1040_1273 1371995 - 1372786 + | ABC transporter related TM1040_1274 1372783 - 1373496 + | ABC transporter related TM1040_1275 1373500 - 1374510 + | inner-membrane translocator TM1040_1276 1374507 - 1375832 + | inner-membrane translocator TERM 1441 1375899 - 1375863 - T 100 -15.3 -4.21439 | opp_overlap 1375869, overlap 1375869 CAACTTGAAGACAAA CAAAAACGCCTGTCGAA ATA TTCGGCAGGCGTTTTCA ATTTCCCGAGAGCCT TERM 1442 1375869 - 1375893 + T 100 -16.5 -4.35524 | opp_overlap 1375869 1375863 GAAGACAAACAAAAA CGCCTGTCGAA ATA TTCGGCAGGCG TTTTCAATTTCCCGA TERM 1443 1375893 - 1375869 - T 100 -14.3 -5.4659 | opp_overlap 1375869, overlap 1375863 GAAGACAAACAAAAA CGCCTGTCGAA ATA TTCGGCAGGCG TTTTCAATTTCCCGA TM1040_1277 1376249 - 1375914 - | hypothetical protein TM1040_1278 1377646 - 1376648 - | phage late control D TERM 1444 1377226 - 1377252 + g 78 -2.8 -5.03145 | opp_overlap 1377228, overlap 1377228 GGCTTTCGGACACCA TAGCGATCAGGC CAT GCTCGCTCGCGA TTTTTTCGACCATTG TM1040_1279 1377864 - 1377646 - | phage tail X TM1040_1280 1378246 - 1377836 - | phage P2 GpU TM1040_1281 1380720 - 1378246 - | hypothetical protein TERM 1445 1378559 - 1378579 + g 80 -11.1 -3.70902 | opp_overlap 1378539 1378538 1378559 GCGCGCTCAGACAGA CGCGCCAGA CGC TCTGTCGCG TTTGCGTGTGCCACA TERM 1446 1380113 - 1380138 + g 77 -3.9 -5.00616 | gap 1, overlap 1380108 GCTATCAGGTCGCTT GCACTCAGGCCG ATC TGGTC-GAGCGC TTTTTTCGCGGCACC TM1040_1282 1381143 - 1380844 - | hypothetical protein TERM 1447 1381017 - 1381038 + g 73 -4.3 -4.65895 | overlap 1381000 CGCCTGCCGTCGGTT CGCGCAGGG TGAC CTCTTTGCG TTTTTCGCTGCCAAC TM1040_1283 1381659 - 1381153 - | phage major tail tube protein TM1040_1284 1382876 - 1381659 - | phage tail sheath protein TM1040_1285 1383349 - 1382990 - | hypothetical protein TM1040_1286 1383850 - 1383350 - | hypothetical protein TM1040_1287 1384859 - 1383852 - | putative secreted serine protease TM1040_1288 1385146 - 1384859 - | hypothetical protein TERM 1448 1385214 - 1385200 - R 75 -12.8 -3.05816 | opp_overlap 1385199 1385196 CGACCTCCGAGGTAA GCGCGC CGT GCGCGC GTGGGTTTCAAGAGA TM1040_1289 1385909 - 1385181 - | putative variable tail fibre protein TM1040_1290 1386465 - 1385920 - | Phage tail protein I TM1040_1291 1387345 - 1386446 - | baseplate J-like protein TM1040_1292 1387683 - 1387345 - | GPW/gp25 TM1040_1293 1388022 - 1387732 - | PAAR TM1040_1294 1388399 - 1388022 - | phage baseplate assembly protein V TM1040_1295 1388932 - 1388396 - | hypothetical protein TERM 1449 1388758 - 1388742 - G 76 -9.4 -4.06502 | CATTTTGAAACGAAA GGCACC TGTTC GGTGCC GGGGTCTGCATCCGG TERM 1450 1388811 - 1388825 + g 74 -3.5 -4.84359 | gap 1 TCGACCAGTACCGCA GGCACC GGCA GG-GCC TTTTTATCGAGGTCA TM1040_1296 1389480 - 1388932 - | prophage LambdaW5, minor tail protein Z, putative TM1040_1297 1389796 - 1389485 - | hypothetical protein TM1040_1298 1390053 - 1389796 - | hypothetical protein TERM 1451 1390079 - 1390102 + r 95 -15.4 -3.77196 | CTTTTTCAGGGGGTG TCTCTGGCCT GATC AGGCCAGAGA TTTAATGCGTGCTCG TM1040_1299 1392111 - 1390120 - | peptidase U35, phage prohead HK97 TERM 1452 1390764 - 1390744 - G 71 -5.3 -4.37092 | overlap 1390720 1390762 AGTTTTCGGAGAAAA CTGGCGCTG ACC CAGAGACAG CAGATCCTCTGTCGC TM1040_1300 1393741 - 1392128 - | phage portal protein, lambda TERM 1453 1392459 - 1392495 + g 72 -2.2 -4.78848 | gap 1, overlap 1392455 1392462 1392462 1392463 ATGAACTTCGACCGC TTGCTCGCTGGCAGCGG CGAT CCGTTGTC-GAGGGTGA TTTTCTGTTTCAGCA TERM 1454 1393221 - 1393197 - G 75 -8.5 -4.26076 | overlap 1393213 1393214 CGATCCTCATCAAAA TCGACCGGGCA CAA CACCGGGTCGA GGATCTGCAATGCAA TM1040_1301 1394232 - 1393738 - | hypothetical protein TERM 1455 1393777 - 1393788 + g 71 -7.2 -4.15044 | overlap 1393776 GCGCCCGAAGCCGCC GCGC CGCC GCGC TTTCTTAGCCGCCAG TM1040_1302 1396231 - 1394279 - | phage terminase GpA TERM 1456 1394727 - 1394738 + g 88 -7.2 -4.90525 | opp_overlap 1394725 1394723 GAGTGCAAGTAGACG GGGC GCAC GCCC TTTTGTTTGACCTTC TERM 1457 1395043 - 1395059 + g 75 -7.9 -4.24204 | CCCAGCCAACTATTT CGACCTC GAG GCGGTCG TTTTGCATATCAATA TM1040_1303 1396782 - 1396228 - | phage DNA packaging Nu1 TM1040_1304 1397338 - 1396955 - | hypothetical protein TM1040_1305 1397748 - 1397338 - | glycoside hydrolase family protein TM1040_1306 1398345 - 1398109 - | hypothetical protein TERM 1458 1399036 - 1399004 - g 71 -9.3 -3.7732 | GGTGCATACCAAGAA GCATTTGATCGGATC GAG GATCTAATCAAATAC GAAGGTCTTAAAGGT TM1040_1307 1398593 - 1399195 + | hypothetical protein TM1040_1308 1399240 - 1399593 + | hypothetical protein TM1040_1309 1400223 - 1399675 - | hypothetical protein TM1040_1310 1400966 - 1400406 - | hypothetical protein TM1040_1311 1401371 - 1400970 - | hypothetical protein TERM 1459 1401129 - 1401109 - G 80 -3.8 -5.05113 | opp_overlap 1401112, overlap 1401110 TCGACATAAACAAAA TCTGCGCG ATAGA CGCGCTGC TTGGCCCCGCCGTCG TM1040_1312 1401808 - 1401380 - | hypothetical protein TM1040_1313 1402140 - 1401814 - | hypothetical protein TM1040_1314 1402690 - 1402391 - | hypothetical protein TM1040_1315 1403685 - 1402687 - | hypothetical protein TERM 1460 1403144 - 1403168 + g 78 -6.4 -4.5815 | gap 1, overlap 1403147 GAACAAACATCCGTT GTGGGCGCGGA TTGG TCCGCGCA-AC TTGTTTGTTTTTCTT TERM 1461 1403219 - 1403247 + g 73 -4.3 -4.59773 | ATGGGGCCGGTTTTT CCGGCGGGCGGGT TCA ACCGGCGGGCGGG TTTTTCCGGCTCACG TERM 1462 1403277 - 1403298 + g 85 -9.4 -4.59773 | overlap 1403278 1403288 GGTGAGAGGGTTCGA CCGGCTGC GCACCG GTAGCCGG TTTTTCCGGCTCACG TERM 1463 1403820 - 1403836 + r 80 -11.5 -3.73775 | GGCAGCCTTGGCCAG GGCGCGG GTG TCGCGCC TTTCCTGCGCATGCC TM1040_1316 1404421 - 1403888 - | hypothetical protein TM1040_1317 1404701 - 1404414 - | hypothetical protein TERM 1464 1405061 - 1405045 - g 72 -2.9 -4.84359 | opp_overlap 1405045 CGAGTGTCACAAAAA TTTCGGA TCA CCCGGAA TTTGGCTTTGCTGGC TM1040_1318 1404882 - 1405148 + | hypothetical protein TM1040_1319 1405507 - 1405184 - | hypothetical protein TERM 1465 1405718 - 1405730 + H 72 -6.2 -4.42062 | AGAAACTGTTCCATG CCCC TTAAT GGGG TTTATTTACCCCATC TERM 1466 1406304 - 1406327 + G 76 -9.5 -4.04415 | opp_overlap 1406306, overlap 1406306 TGGGTCAAACAAGTA AAGGCCGGG GACGAA CCCGGCCTA TTTCATCTTATTTCA TERM 1467 1406306 - 1406325 + G 82 -12.1 -3.59781 | opp_overlap 1406306, overlap 1406304 GGTCAAACAAGTAAA GGCCGGG GACGAA CCCGGCC TATTTCATCTTATTT TERM 1468 1406325 - 1406306 - g 95 -12.1 -4.14764 | opp_overlap 1406306 1406304 GGTCAAACAAGTAAA GGCCGGG GACGAA CCCGGCC TATTTCATCTTATTT TM1040_1320 1405803 - 1406438 + | putative phage repressor TM1040_1321 1407716 - 1406799 - | hypothetical protein TM1040_1322 1408715 - 1407723 - | ankyrin TM1040_1323 1409492 - 1409154 - | hypothetical protein TM1040_1324 1412040 - 1409890 - | hypothetical protein TM1040_1325 1412750 - 1413019 + | hypothetical protein TERM 1469 1413493 - 1413473 - g 71 -8.9 -3.78953 | overlap 1413456 1413474 AGCCGCACGACCAAA CGCGCGACC GAC GGTCGCCCA GATTGCCCGTTCAAC TM1040_1326 1413107 - 1413550 + | hypothetical protein TERM 1470 1413595 - 1413568 - f 71 -11.2 -3.14132 | opp_overlap 1413569 1413570, overlap 1413553 CCTGCCTCTGACCAA CTGGCAGGGGTG ATCG CACCCCTGCCCT TTTCTCACACCCTGC TERM 1471 1413569 - 1413594 + F 100 -14.7 -4.3739 | opp_overlap 1413553 1413568, overlap 1413570 CTGCCTCTGACCAAC TGGCAGGGGTG ATCG CACCCCTGCCC TTTTCTCACACCCTG TERM 1472 1413570 - 1413593 + F 91 -18.2 -3.22113 | opp_overlap 1413553 1413568, overlap 1413569 TGCCTCTGACCAACT GGCAGGGGTG ATCG CACCCCTGCC CTTTTCTCACACCCT TERM 1473 1414218 - 1414202 - g 78 -13.7 -3.25823 | CTTGGTCGAGACCAA CCGGCTC AAG GAGCCGG AACGCGGATCCGATG TM1040_1327 1413693 - 1414379 + | hypothetical protein TM1040_1328 1414830 - 1415831 + | phage integrase TERM 1474 1416778 - 1416820 + G 73 -9.7 -3.89881 | gap 1, opp_overlap 1416772 1416771 GTTTAGAACCGCGGA CGGCAGCG-CCGGCTATCCG ATCC CGGAGAGCCTGACGCAGCAG TTTGTCGACGTTGAT TM1040_1329 1416383 - 1416856 + | thioesterase superfamily protein TM1040_1330 1417558 - 1416887 - | 6-phosphogluconolactonase TM1040_1331 1417928 - 1417659 - | Usg-like TERM 1475 1419605 - 1419590 - g 75 -7.6 -4.18762 | opp_overlap 1419589 AACTGGCAGGTAAAA TCAAGG AATA CCTTGA GATTCTATCGTCACG TM1040_1332 1418119 - 1420857 + | DNA gyrase subunit A TERM 1476 1420908 - 1420885 - f 77 -13.8 -3.03903 | opp_overlap 1420885 AAAATCTCGCGAATA CGCCGCTCCA GATT TGGGGCGGCG TTTTTCGTTTACGCT TERM 1477 1420885 - 1420908 + F 100 -16 -4.99134 | opp_overlap 1420885 AAAATCTCGCGAATA CGCCGCTCCA GATT TGGGGCGGCG TTTTTCGTTTACGCT TM1040_1333 1420988 - 1421338 + | hypothetical protein TERM 1478 1421344 - 1421365 + T 87 -12.3 -4.04579 | gap 1, opp_overlap 1421344 GTTGATCTAAAAAAA GCCCGGGACA TAT TG-CCCGGGC TTTGATCTTTCTCCG TERM 1479 1421365 - 1421344 - T 100 -12.3 -5.47218 | gap 1, opp_overlap 1421344 GTTGATCTAAAAAAA GCCCGGGACA TAT TG-CCCGGGC TTTGATCTTTCTCCG TM1040_1334 1422862 - 1421393 - | carboxypeptidase TERM 1480 1422298 - 1422310 + g 70 -4.7 -4.56597 | opp_overlap 1422284 1422295, overlap 1422296 1422293 AGGTGCCAGACAGCC CCGCC GGG GTCGG TTTTTCCAGCACGCG TM1040_1335 1424012 - 1422867 - | cytochrome oxidase assembly TERM 1481 1423323 - 1423338 + g 74 -3.2 -4.78572 | GTGCAAAAGGCCGGT GCTCAT GCCA AAGAGC TTTTCTTCCTTCAGG TERM 1482 1423357 - 1423376 + g 73 -10 -3.61398 | gap 1 TCTTCCTTCAGGCGC CGCG-CCTG CAT CAGGTCGCG TTCTTCGCGCCCGAG TM1040_1336 1424825 - 1424076 - | RNA methyltransferase TrmH, group 1 TM1040_1337 1424982 - 1425614 + | thiamine monophosphate synthase TERM 1483 1426166 - 1426136 - g 74 -12.4 -3.23869 | opp_overlap 1426158, overlap 1426134 1426137 CAGCAGGCGACAAGA TCCTGCGCCCCCTC GTC GAGGGGCCGCTGGG CACGGCCGATGCGCC TERM 1484 1426165 - 1426137 - g 78 -15.9 -2.54 | opp_overlap 1426158, overlap 1426136 1426134 AGCAGGCGACAAGAT CCTGCGCCCCCTC GTC GAGGGGCCGCTGG GCACGGCCGATGCGC TERM 1485 1426426 - 1426441 + G 74 -11.8 -3.51329 | opp_overlap 1426403 CAGGCGCTGCTGGCG CGCGGG GCTG CCCGCG TTCTGGTTACCGATG TM1040_1338 1425754 - 1426662 + | PfkB TM1040_1339 1426659 - 1427567 + | indigoidine synthase A like protein TM1040_1340 1427655 - 1428362 + | hypothetical protein TERM 1486 1428402 - 1428385 - T 70 -9.9 -3.41726 | overlap 1428383 AACATCTCAACAAGA TCAACGG TTTG CCGTTGA TTGAGATCGTCTCTA TM1040_1341 1429391 - 1428363 - | patatin TERM 1487 1429109 - 1429087 - G 93 -7.6 -4.87786 | TCAATGGGAGAAAAA GGCGCAGCCA CCT TGAGCGCGCC CAGGATTGGAGCGGC TERM 1488 1429478 - 1429444 - R 87 -17 -2.87211 | opp_overlap 1429434 AGGTCCCGGCACAGA TGCGCGCTGCCGGTTC AGT GCCCCGGCCGCGCGCA GGCATCCTCAGAGTG TM1040_1342 1430259 - 1429486 - | 3-hydroxybutyrate dehydrogenase TERM 1489 1430411 - 1430429 + H 78 -13.1 -3.28745 | opp_overlap 1430411, overlap 1430406 CACAAAAGAAAAAAA CGCCGGC ACGAA GCCGGCG TTCAGTTATTGAGGC TERM 1490 1430429 - 1430411 - H 100 -13.1 -6.14618 | opp_overlap 1430411 1430406 CACAAAAGAAAAAAA CGCCGGC ACGAA GCCGGCG TTCAGTTATTGAGGC TERM 1491 1430584 - 1430602 + H 75 -6 -4.65219 | AGGGCAGCGCAGGAT TGTTCTCA AAA TGAGACCA TTATTTTTCTCTTCT TERM 1492 1432200 - 1432185 - g 75 -8.2 -4.26076 | TGATGGGCATGAAAA GCCCCG CTGC CGAGGC GATGATCCAGCATAT TERM 1493 1432338 - 1432320 - g 73 -4.5 -4.68593 | overlap 1432322 GGCAGTACGCAAAAA GCCGCAT CGCGC ATGAGGC AAGCCTGCGCTACCC TM1040_1343 1430594 - 1432423 + | extracellular solute-binding protein TERM 1494 1432432 - 1432448 + F 100 -15.1 -5.79526 | opp_overlap 1432426 CGAATAAACCTCTAA CCGGCCC TCT GGGCCGG TTTTTTTTCGCATCT TERM 1495 1432815 - 1432834 + G 78 -2.7 -5.05113 | opp_overlap 1432816, overlap 1432816 ATATCGATGACAGAA GCCCGCG AAGAGA TGCGGGA TTTTCTTTATCTGGA TM1040_1344 1432587 - 1432883 + | hypothetical protein TM1040_1345 1433571 - 1432942 - | XRE family transcriptional regulator TERM 1496 1433484 - 1433513 + g 80 -11.3 -3.74747 | GCAGCTCGCGCACAC GCGCGCCCAGATC TAAT GCTTCGGGCGCGC TTTGATCGCCATTGG TERM 1497 1433810 - 1433835 + G 78 -10.3 -3.89346 | ATGCTGCCTTTGAAC GCGCGGTGCGG GGAA CCGCACGGGGC TTTCTCGAATCCGGA TM1040_1346 1433650 - 1435158 + | AMP-dependent synthetase and ligase TM1040_1347 1435162 - 1435863 + | DSBA oxidoreductase TERM 1498 1435916 - 1435941 + F 84 -13.3 -3.60792 | overlap 1435917 1435919 GCCGGACATCGCTCC AGAGCGCACAG GGAT CTGTGCGCTCA TTTAACACTTGAAGC TERM 1499 1435917 - 1435940 + F 86 -16.8 -2.76261 | overlap 1435916 1435919 CCGGACATCGCTCCA GAGCGCACAG GGAT CTGTGCGCTC ATTTAACACTTGAAG TERM 1500 1435919 - 1435938 + F 77 -13.6 -2.92667 | overlap 1435917 1435916 GGACATCGCTCCAGA GCGCACAG GGAT CTGTGCGC TCATTTAACACTTGA TERM 1501 1436089 - 1436075 - g 100 -11.4 -5.30575 | opp_overlap 1436073 GAAAAACGCAAAAAA GCCCTG CCA CAGGGC GAATTCATTGCTCTG TERM 1502 1436469 - 1436489 + G 70 -3.4 -4.63527 | gap 1, overlap 1436458 GCGACATGGCGCGCA TCAT-ATCG CTCG CGATGATGA TTTTTACGCTGGTGC TM1040_1348 1436054 - 1437277 + | major facilitator transporter TERM 1503 1437312 - 1437280 - T 100 -15 -4.37658 | opp_overlap 1437283 1437309, overlap 1437283 AACTCCCGCATAAAA GAACAGTCCCTCTG TCAGG CAGAGGGACTGTTT TAAATCAAAACCTTA TERM 1504 1437309 - 1437283 - T 100 -16.7 -4.30995 | opp_overlap 1437283, overlap 1437280 TCCCGCATAAAAGAA CAGTCCCTCTG TCAGG CAGAGGGACTG TTTTAAATCAAAACC TERM 1505 1437283 - 1437309 + T 100 -17.4 -4.18018 | opp_overlap 1437283 1437280 TCCCGCATAAAAGAA CAGTCCCTCTGT CAG GCAGAGGGACTG TTTTAAATCAAAACC TM1040_1349 1440807 - 1437358 - | transcription-repair coupling factor TERM 1506 1437588 - 1437556 - G 70 -10.5 -3.53012 | CTTGTCGTTGTGAAA CTGGATGGTCGCGCC CTT GGGGCCACCATCGAG CTTGGCAATCCCGGC TERM 1507 1439768 - 1439735 - G 74 -5.9 -4.56597 | overlap 1439736 CGCTCGGGCGAAAAA TTGCGTCCGATGCGA CCGC CCGCATCGACCACAC CAGGGCCGGAGGCCT TERM 1508 1440201 - 1440217 + g 75 -8 -4.21194 | opp_overlap 1440192 CGGAAACCGGCGCAA GCTCGA CCACC TCGAGC TTTTCGGTGGTGCGC TERM 1509 1440723 - 1440737 + g 74 -7 -4.41348 | overlap 1440724 TATGCAGCACCGGGC CGGCGC TTC GCGCCA TTTCTTTCAGAACCA TM1040_1350 1441377 - 1440838 - | hypothetical protein TERM 1510 1441327 - 1441315 - G 76 -9.1 -4.12942 | overlap 1441305 1441306 CCAAAGGTTCGAAAA CGACC TGA GGTCG ATCAACTCGAAGATG TERM 1511 1441403 - 1441392 - H 72 -2.2 -4.98061 | gap 1, overlap 1441395 AGAGAGTAAACAAAA GACGC CCT GCG-C GCTGCCTGCCCTGTA TM1040_1351 1441498 - 1442535 + | delta-aminolevulinic acid dehydratase TERM 1512 1442640 - 1442629 - f 77 -7.2 -4.41348 | GTTGTGTCAAACAAA GCGC CAAA GCGC AGATTCACGAGCAGG TM1040_1352 1442665 - 1443237 + | twin-arginine translocation pathway signal sequence domain-containing protein TERM 1513 1443287 - 1443263 - T 74 -12.2 -3.19157 | gap 1, opp_overlap 1443264 1443265, overlap 1443254 1443265 TATCAAGGTGATGAA GACCTCCCCTC ATTC GAGGGGAGG-C TTTTTTTCAGCCCAA TERM 1514 1443264 - 1443287 + T 100 -12.4 -5.40072 | opp_overlap 1443263 1443254 1443265, overlap 1443265 ATCAAGGTGATGAAG ACCTCCCCTC ATTC GAGGGGAGGC TTTTTTTCAGCCCAA TERM 1515 1443265 - 1443286 + T 100 -15.9 -3.83561 | opp_overlap 1443265 1443263 1443254, overlap 1443264 TCAAGGTGATGAAGA CCTCCCCTC ATTC GAGGGGAGG CTTTTTTTCAGCCCA TERM 1516 1443286 - 1443265 - T 85 -15.9 -3.15574 | opp_overlap 1443264 1443265, overlap 1443263 1443254 TCAAGGTGATGAAGA CCTCCCCTC ATTC GAGGGGAGG CTTTTTTTCAGCCCA TM1040_1353 1444166 - 1443294 - | 3-hydroxyisobutyrate dehydrogenase TERM 1517 1443875 - 1443905 + g 78 -9.8 -3.90112 | gap 1 TGACCTCTGCTGATA CCGTGGTGTGATC GACAAA GATCGCACC-CGG TTTCATTCCGGCAAA TERM 1518 1444987 - 1445002 + G 76 -10.4 -3.81951 | opp_overlap 1444977 ATATACGGAGCTGTT TCCCGG CCTC CCGGGA TTTCGTGGTCTCGAG TERM 1519 1445471 - 1445455 - g 79 -9.3 -4.18018 | opp_overlap 1445443 1445455 1445454 1445452 GCGCTGGACCGAAAA CGGGCCG GTT CTGCCCG GCTCGCTGTTTGAGC TM1040_1354 1444280 - 1446769 + | penicillin amidase TERM 1520 1446771 - 1446806 + T 86 -6.3 -5.10154 | gap 2, opp_overlap 1446777, overlap 1446775 1446777 TGCCGCGCAACTAAA GAA-AA-ACGCAGCGCT CTAG AGCGCTGCGTATTGTGC TTTTTGCTTTTCGGT TERM 1521 1446775 - 1446800 + T 88 -13.3 -3.78015 | opp_overlap 1446777, overlap 1446771 1446777 GCGCAACTAAAGAAA AACGCAGCGCT CTAG AGCGCTGCGTA TTGTGCTTTTTGCTT TERM 1522 1446798 - 1446777 - T 100 -15.9 -5.38326 | opp_overlap 1446775 1446771 1446777 GCAACTAAAGAAAAA CGCAGCGCT CTAG AGCGCTGCG TATTGTGCTTTTTGC TERM 1523 1446777 - 1446798 + T 90 -15.9 -3.45037 | opp_overlap 1446777, overlap 1446775 1446771 GCAACTAAAGAAAAA CGCAGCGCT CTAG AGCGCTGCG TATTGTGCTTTTTGC TM1040_1355 1448057 - 1446786 - | GTP-binding protein, HSR1-related hfq 1448296 - 1448057 - | RNA-binding protein Hfq TM1040_1357 1449967 - 1448429 - | cation transporter trkA 1451345 - 1449969 - | potassium transporter peripheral membrane component TM1040_1359 1452863 - 1451445 - | two component, sigma54 specific, Fis family transcriptional regulator TM1040_1360 1455139 - 1452860 - | multi-sensor signal transduction histidine kinase TM1040_1361 1456618 - 1455239 - | two component, sigma54 specific, Fis family transcriptional regulator TM1040_1362 1457724 - 1456636 - | signal transduction histidine kinase, nitrogen specific, NtrB TM1040_1363 1458707 - 1457721 - | dihydrouridine synthase TIM-barrel protein nifR3 TERM 1524 1457910 - 1457898 - G 71 -5.5 -4.36914 | CTCCGCCCCATAAAA GGCAA GCA TCGCC TCGTAGTGCTTTGAA TERM 1525 1458065 - 1458079 + g 73 -4.2 -4.65895 | CTCCGGAGTCTGAGA GCGC CTTGCCC GCGC TTTTTGCATCGACAA TERM 1526 1459356 - 1459381 + G 89 -11.1 -4.19735 | opp_overlap 1459350 1459371, overlap 1459357 AGGACCGAAGCGCGC TCTTTGCGGCG CAAA CGCCGCAAGGC TTTCATTTTGACGCG TERM 1527 1459357 - 1459380 + G 80 -14.6 -3.11359 | opp_overlap 1459350 1459371, overlap 1459356 GGACCGAAGCGCGCT CTTTGCGGCG CAAA CGCCGCAAGG CTTTCATTTTGACGC TERM 1528 1459408 - 1459371 - g 70 -10.5 -3.53012 | opp_overlap 1459357 1459356 TCTTTGCGGCGCAAA CGCCGCAAGGCTTTCAT TTTG ACGCGATCCTTGCGGCG CATATGCGCCACGAC TM1040_1364 1458902 - 1460050 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TM1040_1365 1460047 - 1460544 + | phosphatidylglycerophosphatase TM1040_1366 1460541 - 1461020 + | CinA-like TM1040_1367 1461500 - 1461054 - | cyclase/dehydrase TM1040_1368 1461575 - 1462117 + | hypoxanthine phosphoribosyltransferase TERM 1529 1462368 - 1462347 - g 72 -2.2 -4.86001 | gap 1, overlap 1462349 1462350 ACCAGGTCATAAAAA CAGCGCCGC GCATT AC-GCGCCG GGACAAGTCAAGAAG TM1040_1369 1462243 - 1462569 + | hypothetical protein TM1040_1370 1463744 - 1462602 - | peptidase M20D, amidohydrolase TM1040_1371 1464733 - 1463741 - | lipoyl synthase TM1040_1372 1465929 - 1464883 - | hypothetical protein TERM 1530 1465360 - 1465388 + g 77 -11.7 -3.61609 | opp_overlap 1465357 AGACTGTGAAAACTC CGCAATCTGTCCT GCA AGGCCCGATTGCG TTGTCGTTTCCATGC TM1040_1373 1466164 - 1466496 + | hypothetical protein TERM 1531 1466472 - 1466491 + T 74 -10.6 -3.61178 | opp_overlap 1466423 1466472 ACGCGCAACAAAAAA CGGCGCCC CGCA GGACGCCG TTTGAACTCAATACC TERM 1532 1466491 - 1466472 - T 100 -12.8 -5.45652 | opp_overlap 1466472, overlap 1466423 ACGCGCAACAAAAAA CGGCGCCC CGCA GGACGCCG TTTGAACTCAATACC TERM 1533 1466526 - 1466542 + T 74 -4.3 -4.77775 | opp_overlap 1466526 ATCGCTTACATAAAG GCGTCGG GCA TCGAGGC TTTCTTTTCTGCGAT TM1040_1374 1468060 - 1466516 - | trimethylamine methyltransferase guaA 1468257 - 1469819 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1534 1469843 - 1469865 + F 100 -20.6 -4.61873 | opp_overlap 1469843 CCAAGTCTGATACGA GCCCCGGTGC TGC GCACCGGGGC TTTTCATTTCTGACC TERM 1535 1469865 - 1469843 - f 100 -20.6 -2.63631 | opp_overlap 1469843 CCAAGTCTGATACGA GCCCCGGTGC TGC GCACCGGGGC TTTTCATTTCTGACC TERM 1536 1469918 - 1469956 + F 100 -9.5 -4.8667 | gap 1 ACCGAGGAGCGCGAA GCGCCAGGATGTCATCCC CCGG GGGTTGACCTCCCG-CGC TTTTTGTCGCCTCTC TERM 1537 1470049 - 1470036 - g 79 -9.5 -4.25104 | opp_overlap 1470047 1470048 CGCTGCCCAGCAAAA CGCGC TTCT GCGCG CTGCGATCTGGATGA TM1040_1376 1469995 - 1470888 + | hypothetical protein TM1040_1377 1471021 - 1472160 + | membrane protein involved in aromatic hydrocarbon degradation TERM 1538 1472186 - 1472207 + F 100 -14.4 -5.28176 | opp_overlap 1472174 1472184 1472177 AAAGGACACGGAACT GCCCCGCC CTCACT GGCGGGGC TTTTTTGTGGGTGAC TM1040_1378 1472383 - 1473192 + | hypothetical protein TERM 1539 1473410 - 1473380 - g 73 -4.7 -4.64676 | overlap 1473381 TGATGCCGAAGAAAA TTCAGACGGAAAA CCAGT TTGCCCGTCTGAT TGGGGCGACGCCGCT TM1040_1379 1473238 - 1474176 + | homoserine O-succinyltransferase TERM 1540 1474575 - 1474549 - g 70 -3.6 -4.58395 | gap 1, overlap 1474550 1474551 1474553 GCCATTTTGCAAAAA GC-CAGCGCGC GCCTCG GCGCACAGCGC CCGATCGTGCTGGGC TM1040_1380 1474186 - 1475151 + | alpha/beta hydrolase fold TERM 1541 1476045 - 1476016 - g 82 -12.2 -3.66018 | gap 1, opp_overlap 1476014 1476033 1476034 CGACTACGCCAACAA GGATC-GCGCTGC GCTCG GCAGCGCTGACCC GCTGATTTGTGGAGG TM1040_1381 1475213 - 1476082 + | hypothetical protein TM1040_1382 1476075 - 1476692 + | TetR family transcriptional regulator TM1040_1383 1476848 - 1478965 + | methyl-accepting chemotaxis sensory transducer TERM 1542 1479042 - 1479010 - T 86 -14.9 -3.33162 | opp_overlap 1479017, overlap 1479017 GACGCTATCCTACAA CAGAAAAGGCCGCCC AAG AGGCGGCCTTTTGCG TATTCGTAAGTTCCG TERM 1543 1479017 - 1479035 + T 93 -13.1 -4.29325 | opp_overlap 1479017 1479010 TCCTACAACAGAAAA GGCCGCC CAAGA GGCGGCC TTTTGCGTATTCGTA TERM 1544 1479035 - 1479017 - T 100 -13.8 -4.73682 | opp_overlap 1479017, overlap 1479010 TCCTACAACAGAAAA GGCCGCCC AAG AGGCGGCC TTTTGCGTATTCGTA rpsI 1479548 - 1479063 - | 30S ribosomal protein S9 rplM 1480012 - 1479554 - | 50S ribosomal protein L13 TM1040_1386 1481611 - 1480196 - | GntR family transcriptional regulator TM1040_1387 1481946 - 1481680 - | hypothetical protein TERM 1545 1481961 - 1481981 + H 100 -14 -5.36441 | CAGAACCAACTGGCA GGCCGGAG CTCGT CTCCGGCC TTTTTTATGTCGCCA TERM 1546 1482236 - 1482251 + G 70 -10.4 -3.4512 | opp_overlap 1482228, overlap 1482234 AGGAAGATACCGCCC GCGGTG TACC CACCGC TATTGTTAACTCTTT TM1040_1388 1482166 - 1482672 + | S-adenosylmethionine decarboxylase related TERM 1547 1482902 - 1482865 - g 80 -11.2 -3.79747 | opp_overlap 1482860, overlap 1482866 TCATCTATCATGAAA TGCTGACCCATGTGCC GATCCT GGCACATGGGGCCGCC AAACGTGTGCTCATC TERM 1548 1482901 - 1482866 - g 79 -14.7 -2.87527 | opp_overlap 1482860, overlap 1482865 CATCTATCATGAAAT GCTGACCCATGTGCC GATCCT GGCACATGGGGCCGC CAAACGTGTGCTCAT TM1040_1389 1482669 - 1483523 + | spermidine synthase TM1040_1390 1484003 - 1483581 - | phenylacetic acid degradation-related protein TM1040_1391 1484388 - 1485740 + | tRNA (uracil-5-)-methyltransferase Gid TERM 1549 1485746 - 1485784 + F 78 -14 -2.56596 | overlap 1485741 AAATTTTTGATGGAC GCACTCATGATCCCGG CTCTAGA CTGGGATCATGAGTGA TACATTCCTCGAGAA TM1040_1392 1485777 - 1486391 + | methyltransferase type 11 TERM 1550 1486843 - 1486863 + G 76 -5.3 -4.63932 | opp_overlap 1486813, overlap 1486845 TATGAAGGCGGCGCT CGCACGGCT CCC AGCCCTGAG TTTTATTGAGACATC TM1040_1393 1486388 - 1487236 + | glutamyl-tRNA synthetase, class Ic TM1040_1394 1487635 - 1487246 - | phosphoribosyl-AMP cyclohydrolase TM1040_1395 1487653 - 1488147 + | hypothetical protein TERM 1551 1488214 - 1488186 - f 100 -13.2 -5.47159 | gap 1 CGTTAACAGAAAAAA CCGCCGCTCATCC GGGC AGATG-GCGGCGG CAAGTGATCGCGCGG TERM 1552 1488279 - 1488255 - f 71 -11.5 -3.14132 | overlap 1488258 CCCGGTGGGCACCAA TCACCAGAAAC GAA GTTTCTGGTGC GGATCGAACAGGCAA TERM 1553 1488276 - 1488258 - f 71 -11.8 -2.77899 | overlap 1488255 GGTGGGCACCAATCA CCAGAAAC GAA GTTTCTGG TGCGGATCGAACAGG TERM 1554 1488390 - 1488378 - g 78 -4.8 -4.82855 | overlap 1488380 TACGAAACTGAAAAA CGTC GCTCA GACG AGACCCGGAAGATGC TM1040_1396 1488276 - 1488533 + | hypothetical protein TERM 1555 1488532 - 1488546 + T 71 -8.6 -3.97401 | overlap 1488540 CCTCGATCTCTGTCT GACGTT TGC AACGTC TTGTTGTCCTTTTGT TM1040_1397 1490743 - 1488653 - | DEAD/DEAH box helicase-like TM1040_1398 1492970 - 1490751 - | DNA ligase, NAD-dependent TERM 1556 1490919 - 1490935 + g 83 -4.3 -5.02074 | overlap 1490907 CTCGGCGCGCGCCTT TGCCTCG GCG CGGGTCA TTTTTTCGAGCGTGC TERM 1557 1492902 - 1492913 + g 74 -3.6 -4.75308 | overlap 1492907 GTCTTTTTGGTGATA GTCG TGAT CGGC TTTTTCGATCTTGGT TERM 1558 1493083 - 1493110 + r 95 -12.6 -4.67353 | opp_overlap 1493083 CTAGAGACGCAAAAA CCCCGCCGGGAT GCTC AGCCCGACGGGG TTTTTAAATGAATGG TERM 1559 1493110 - 1493083 - R 100 -14.8 -4.72846 | opp_overlap 1493083 CTAGAGACGCAAAAA CCCCGCCGGGAT GCTC AGCCCGACGGGG TTTTTAAATGAATGG TM1040_1399 1493867 - 1493148 - | two component transcriptional regulator TM1040_1400 1494271 - 1493993 - | hypothetical protein TERM 1560 1494641 - 1494621 - g 81 -4.5 -5.00616 | opp_overlap 1494605, overlap 1494623 GCGCTTGCGAAAAAA GGCGCCTGC TGT GCGGGCATC GATATTCACGACGCA TM1040_1401 1494429 - 1495574 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1561 1495607 - 1495584 - T 82 -2.2 -5.40004 | opp_overlap 1495587, overlap 1495585 1495586 CAGTAAACCAAAAAA TGCGGGAGCC TTCG GGCTCCCTTT TCTTTTGCTTGATAC TERM 1562 1495587 - 1495604 + T 100 -12.7 -5.18643 | opp_overlap 1495586 1495585 1495584 TAAACCAAAAAATGC GGGAGCC TTCG GGCTCCC TTTTCTTTTGCTTGA TM1040_1402 1496802 - 1495642 - | lipid-A-disaccharide synthase TM1040_1403 1497594 - 1496806 - | hypothetical protein TM1040_1404 1498393 - 1497608 - | UDP-N-acetylglucosamine acyltransferase TM1040_1405 1498875 - 1498393 - | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase TM1040_1406 1499484 - 1498939 - | outer membrane chaperone Skp (OmpH) TERM 1563 1499551 - 1499507 - R 72 -10.6 -3.53012 | opp_overlap 1499507, overlap 1499508 TCCTGTGCCGTCAAA GTTGCTGCGGGCAGCAGGGC ACTCA GCCCCACTGCCCAAAGCAGA TGTGTTGAGATCAGA TERM 1564 1499550 - 1499508 - R 78 -14.1 -2.71712 | opp_overlap 1499507, overlap 1499507 CCTGTGCCGTCAAAG TTGCTGCGGGCAGCAGGGC ACTCA GCCCCACTGCCCAAAGCAG ATGTGTTGAGATCAG TM1040_1407 1501970 - 1499580 - | surface antigen (D15) TERM 1565 1500870 - 1500852 - G 78 -10.2 -3.86015 | overlap 1500855 GATGCGCTCGACAAA GACCCGCG GTC CGCGGACC ATTGCAAATTCAACA TERM 1566 1501937 - 1501953 + g 76 -6.5 -4.56597 | opp_overlap 1501914 CCTCTCGGCGCGCAT CGCGG GCACATG CCGCG TTTTTCCCCCAGACC TERM 1567 1502067 - 1502046 - R 90 -8 -5.16681 | gap 1, opp_overlap 1502046 TCAAAAACAAGAAAA GCAGCAGGC GTGGA GCC-GCTGC TTTGAAATTTTGCCT TM1040_1408 1502254 - 1502126 - | hypothetical protein TM1040_1409 1503746 - 1502394 - | peptidase RseP TM1040_1410 1504938 - 1503751 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1568 1503801 - 1503817 + g 71 -6.5 -4.18058 | CCCTACGCGCCAGAT CGTCAAC TCG GGTGACG TTTTCAAGTGTCATT TERM 1569 1503859 - 1503846 - G 71 -9.5 -3.73647 | TTGAGGCATCAATAA GGCCC GGTT GGGCC TCGAGCGTCGCCAGT TERM 1570 1504350 - 1504364 + g 73 -4.2 -4.62471 | overlap 1504345 GATGAGAAGAGGCCT CGGC CAATGAT GCCG TTTTTAACCGTTCCA TERM 1571 1504941 - 1504968 + r 71 -11.2 -3.14564 | gap 1 TGACCCCATGCATCA CCCGCCCCG-CGC CCC GCGTTGGGGCAGG TTCATCCCCAGATGA TM1040_1411 1505767 - 1504970 - | phosphatidate cytidylyltransferase TM1040_1412 1506534 - 1505764 - | undecaprenyl pyrophosphate synthetase TERM 1572 1506500 - 1506471 - G 78 -13.5 -3.14132 | opp_overlap 1506489 TCGGCCCGTCACCAA CGCCCGGTGCAGG ATCT CCCGCACCAGCCG CACGCGGCGTTGCGC TM1040_1413 1507107 - 1506544 - | ribosome recycling factor TERM 1573 1507258 - 1507234 - R 83 -10 -4.20106 | AAATTGCACGCAAAA CACGCGCC TCTGCGGTT GGCGCGTG CTGCAAGTTCTCGCC TM1040_1414 1508033 - 1507284 - | uridylate kinase TERM 1574 1508464 - 1508499 + G 78 -5.2 -4.77173 | gap 1, opp_overlap 1508471 CACCGCTCTTGAAGG GCACGAAGCGCCCCATC ATT GTTGGGG-GCACCGGGC TTTATTTTCTGACAC TM1040_1415 1508184 - 1509050 + | tRNA delta(2)-isopentenylpyrophosphate transferase TM1040_1416 1509244 - 1510074 + | AraC family transcriptional regulator TM1040_1417 1510334 - 1512001 + | twin-arginine translocation pathway signal TERM 1575 1512065 - 1512022 - f 100 -21.1 -3.64703 | CCCCCTTTACCTAAA GGCCTGTCCCCAATCCGTT TTTCGG ACCGGATTGGGGGCAGGCC CAACGCACCACGCCT TERM 1576 1512141 - 1512098 - f 72 -4 -4.68601 | gap 3, opp_overlap 1512109, overlap 1512100 ATTCAAAACAATAAA GGCCTCCGCGA--TTTGGACG ACCCA CGTCCAAATGTCTCAG-GGCC AGCTGACCGCCAGTC TERM 1577 1512465 - 1512481 + G 89 -10.8 -4.43859 | opp_overlap 1512465 1512464, overlap 1512473 TCACCCCGGAAGAAG CCGCGC AGGCC GCGCGG TTTTGTGGCATTCTG TM1040_1418 1512170 - 1513222 + | binding-protein-dependent transport systems inner membrane component TERM 1578 1513780 - 1513748 - g 75 -2.5 -4.91852 | GGCATGAAAAACAAA GTCCCCGGCACTCCG TTG CGCAGCGTGGAAGAC GGAGAATATGCCTGG TM1040_1419 1513238 - 1514674 + | binding-protein-dependent transport systems inner membrane component TERM 1579 1514707 - 1514683 - f 78 -12.7 -3.28447 | opp_overlap 1514696 1514699 1514700, overlap 1514681 1514684 GGACTGATGAGAACA CGGCCGGGGGC GCT GCCCCCGGACC CCCGGGATATTTTGG TERM 1580 1514706 - 1514684 - f 82 -16.2 -2.56747 | opp_overlap 1514696 1514699 1514700, overlap 1514683 1514681 GACTGATGAGAACAC GGCCGGGGGC GCT GCCCCCGGAC CCCCGGGATATTTTG TERM 1581 1514805 - 1514829 + G 100 -10.1 -5.0133 | opp_overlap 1514810 TGACGGCCCGATCCT TGAAATCGACA AGC TGTCGATCTCA TTTTTTACAAGGCTG TM1040_1420 1514770 - 1516857 + | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 1582 1516907 - 1516882 - T 100 -20.5 -4.64861 | opp_overlap 1516870 CCGTTTGAAAACAAA GCGGCCTTCCC GATT GGGAAGGCCGC TGAGATTGCCAAATC TM1040_1421 1518391 - 1516976 - | tetratricopeptide TPR_2 TM1040_1422 1519656 - 1518520 - | di-haem cytochrome c peroxidase TERM 1583 1519744 - 1519720 - R 83 -11.3 -3.95073 | opp_overlap 1519720 TTCCAGATGCAGAAA GGACGCAGCCC TAT GCGCCGCGCCC TTTCAACCCCACAGT TM1040_1423 1520162 - 1519788 - | hypothetical protein TM1040_1424 1520903 - 1520328 - | lytic transglycosylase, catalytic TM1040_1425 1521186 - 1521710 + | single-strand binding protein TERM 1584 1521763 - 1521788 + T 100 -19.1 -3.9693 | opp_overlap 1521748 1521763 1521766, overlap 1521766 TCTCGCCAGGAACAA GAAGGCCCGAC AGAC GTCGGGCCTTC TTCTTTAAATCAATA TERM 1585 1521788 - 1521763 - T 100 -19.1 -3.71848 | opp_overlap 1521763 1521766, overlap 1521748 1521766 TCTCGCCAGGAACAA GAAGGCCCGAC AGAC GTCGGGCCTTC TTCTTTAAATCAATA TERM 1586 1521785 - 1521766 - T 95 -15 -3.99374 | opp_overlap 1521763 1521766, overlap 1521763 1521748 CGCCAGGAACAAGAA GGCCCGAC AGAC GTCGGGCC TTCTTCTTTAAATCA TERM 1587 1521766 - 1521785 + T 100 -15 -4.10744 | opp_overlap 1521766 1521763 1521748, overlap 1521763 CGCCAGGAACAAGAA GGCCCGAC AGAC GTCGGGCC TTCTTCTTTAAATCA TM1040_1426 1524237 - 1521820 - | FAD dependent oxidoreductase TERM 1588 1522524 - 1522549 + g 80 -9.9 -4.07568 | gap 1, opp_overlap 1522523 CTTGATCCGACACAT TCTCGATG-GAA ACA TTCGCATCGAGA TTTTGCAGGAACCAG TERM 1589 1523844 - 1523858 + g 77 -3.5 -4.88407 | TGATCCCATCAATAT TCGTG ACAGG CGCGA TTTTCTTGATTTCTT TERM 1590 1524213 - 1524230 + g 71 -5.5 -4.33767 | opp_overlap 1524214, overlap 1524214 CGCCACCGCCGATAA TCGCCAC ACGC GTGGTGG TTTTCATGGGTTTAT TERM 1591 1524322 - 1524308 - R 77 -2.8 -5.09225 | AGTCCAGTCAAAAAA CGAC CGCCGAT GTCG CACAATAGCCTAATC TM1040_1427 1525757 - 1524444 - | hypothetical protein TM1040_1428 1526790 - 1525837 - | phage integrase TM1040_1429 1528326 - 1526794 - | hypothetical protein TERM 1592 1528303 - 1528291 - G 72 -2.6 -4.8622 | overlap 1528293 GCTCGCAAGCAAAAA GACG CCGAT CGCC AGCGATGCAGTCTTA TM1040_1430 1528465 - 1528316 - | hypothetical protein TERM 1593 1528961 - 1528945 - g 100 -13.7 -4.17089 | opp_overlap 1528944 1528943 TGGAAACGCGTAAAA GGACGCG ACA CGCGTCC CCTTTTGCGCTCCGC TM1040_1431 1528549 - 1529139 + | shikimate kinase TERM 1594 1529656 - 1529674 + G 73 -4.4 -4.63932 | overlap 1529657 ATACAGCGGTTCTTG GCACGCTC ACA GAGCGCGA TTTTCTTGCCGGCTA TERM 1595 1529717 - 1529729 + G 83 -4.7 -5.09895 | GAAATACGGGCTCTT GGGCG ATG CGGCC TTTTTTGACTGGCTC TM1040_1432 1529139 - 1530260 + | 3-dehydroquinate synthase TM1040_1433 1530278 - 1530904 + | hypothetical protein TM1040_1434 1531567 - 1530905 - | type I secretion target repeat-containing protein TM1040_1435 1532020 - 1531769 - | hypothetical protein TM1040_1436 1532918 - 1532091 - | enoyl-CoA hydratase/isomerase TERM 1596 1532734 - 1532710 - G 95 -11.5 -4.57569 | opp_overlap 1532722 1532723 TGACCGGCGCAAAAA TGATCCCCAGC GCC ACTGAGGATCA CCGCTCGCACGCTGC TM1040_1437 1533809 - 1532982 - | inositol monophosphatase TERM 1597 1534296 - 1534330 + r 76 -13.5 -2.79915 | gap 1, opp_overlap 1534298 CGGCGCCACAAAAGA AAGCGCCGCTG-CGGG ATCT CCCGGCAGCGGCGCAC TCTGGTGGCATCAGT TERM 1598 1534328 - 1534298 - R 100 -20.5 -4.77173 | gap 1, opp_overlap 1534296 GCGCCACAAAAGAAA GCGCCGCTG-CGGG ATCT CCCGGCAGCGGCGC ACTCTGGTGGCATCA TM1040_1438 1536886 - 1534364 - | MscS mechanosensitive ion channel TERM 1599 1536862 - 1536837 - G 100 -13.3 -4.22524 | ATAGGCAAAAGCAAA CAGGTCAGCCC CAAA AGGCCGACCTG AAAAAGCGTTCTCAA TM1040_1439 1538076 - 1536892 - | cysteine synthase A TM1040_1440 1538750 - 1538196 - | tellurite resistance protein TM1040_1441 1540192 - 1538768 - | deoxyribodipyrimidine photo-lyase type I TM1040_1442 1541452 - 1540223 - | aminotransferase, class V TERM 1600 1540891 - 1540875 - G 74 -5.7 -4.57474 | TCAACGCAGACAAAA GCCCCCG CAG CATGGGC CAGCGCAGTGATTTC TERM 1601 1541361 - 1541321 - G 78 -10.4 -3.92659 | gap 1, opp_overlap 1541319 1541323 GGTGTAAAATCGAAA CAGGCGG-TCGATCACCTG CCGG CAGGTGTAAGAGCCGCCTG CATTCTCAAAGAAGG TERM 1602 1541546 - 1541514 - R 84 -13.4 -3.58037 | overlap 1541515 GATCAAGCCCGGAAA CGCTCTGGCGCGAC TTCGC GCCGCGCCAGAACT CGGATGTCATGGTCT TERM 1603 1541545 - 1541515 - R 86 -16.9 -2.74501 | overlap 1541514 ATCAAGCCCGGAAAC GCTCTGGCGCGAC TTCGC GCCGCGCCAGAAC TCGGATGTCATGGTC TM1040_1443 1542556 - 1541561 - | zinc-binding alcohol dehydrogenase dmdA 1543728 - 1542571 - | putative dimethyl sulfoniopropionate demethylase TM1040_1445 1544442 - 1543768 - | hypothetical protein TM1040_1446 1545234 - 1544461 - | hypothetical protein TERM 1604 1545314 - 1545291 - H 71 -8.2 -3.90112 | CTCTTGTGAATCAAA TGTCAGACTT TTAA ATGTCTGACA AATGAAAATTTTCAC TERM 1605 1545788 - 1545805 + G 84 -11.3 -4.13014 | CGACAGGGTCAGCCC GGCCTCA CGGA TGAGGCC TTTTGCGCGTCTGAC TM1040_1447 1545359 - 1546090 + | GntR family transcriptional regulator TERM 1606 1546789 - 1546777 - g 78 -4.8 -4.8048 | CTCTGAGATGAAAAA CAGC GCCCT GCTG AAATACTGGTTCGAA TM1040_1448 1546769 - 1547203 + | hypothetical protein TERM 1607 1547770 - 1547743 - g 81 -8.4 -4.58395 | gap 1, opp_overlap 1547743 CGGATCTCGCAAAAA GCGCTCAAG-ACC GCC GGTGCCTGGGCGC TTGCACTTGGTGGAT TM1040_1449 1547314 - 1548600 + | chromate transporter TM1040_1450 1548715 - 1549194 + | hypothetical protein TERM 1608 1549228 - 1549196 - T 70 -11.2 -2.94232 | gap 1, opp_overlap 1549196 1549198, overlap 1549195 GCTTCCGCAAATAAT CTCACG-GCGCGGGG TCTT CCCCGCACTCGCGTG TTGTCCAGATGCAAA TERM 1609 1549272 - 1549245 - T 79 -9.1 -4.2349 | gap 1, opp_overlap 1549245 1549246, overlap 1549246 TGTCCAGATGCAAAA TGGCGCC-CCGA TCTCT TCGGCGGCGCCG TTTCTATTTCGGAGC TERM 1610 1549245 - 1549272 + T 89 -11.3 -4.32857 | gap 1, opp_overlap 1549245 1549246, overlap 1549246 TGTCCAGATGCAAAA TGGCGCC-CCGA TCTCT TCGGCGGCGCCG TTTCTATTTCGGAGC TERM 1611 1549271 - 1549246 - T 75 -12.6 -3.13773 | gap 1, opp_overlap 1549246 1549245, overlap 1549245 GTCCAGATGCAAAAT GGCGCC-CCGA TCTCT TCGGCGGCGCC GTTTCTATTTCGGAG TERM 1612 1549246 - 1549271 + T 75 -12.6 -3.19232 | gap 1, opp_overlap 1549245 1549246, overlap 1549245 GTCCAGATGCAAAAT GGCGCC-CCGA TCTCT TCGGCGGCGCC GTTTCTATTTCGGAG TM1040_1451 1549924 - 1549340 - | hypothetical protein TERM 1613 1549617 - 1549597 - G 81 -6.1 -4.77036 | overlap 1549598 TTGCAGCAGCAAAAA CGCCGTC GCGCTCG GACGGCA GGAACTCGATTTTAT fumC 1550169 - 1551566 + | fumarate hydratase TERM 1614 1551633 - 1551608 - f 100 -8.9 -5.54907 | overlap 1551610 TTCAGAAAAGAAAAA GTGCGGGCC GAGAAAAA GGCCCGCGC TGACCAAAATGCTGT TERM 1615 1551801 - 1551812 + F 71 -4.4 -4.57205 | CGCGCGGCCCCATAT TTGC GTTA GCAA TTTCTTTACCTTTTT TERM 1616 1552875 - 1552909 + G 76 -5.6 -4.66953 | gap 1 TCCCGGTGCCTGGGC GCTTGCGGCTG-CCG AAGATG CGGTCCGGCGCGAGC TTTTTGAGATATTCC TM1040_1453 1551847 - 1553010 + | hypothetical protein TM1040_1454 1553015 - 1553245 + | uncharacterized arylsulfate sulfotransferase-like protein TM1040_1455 1554612 - 1553254 - | cytochrome P450 TM1040_1456 1555856 - 1554609 - | hypothetical protein TM1040_1457 1556722 - 1555970 - | cytochrome c biogenesis protein, transmembrane region TM1040_1458 1556817 - 1557053 + | SirA-like TERM 1617 1557166 - 1557119 - T 86 -16.4 -2.87026 | opp_overlap 1557131, overlap 1557131 CACACGCATACGACA TGAAATGAAAAAGGCGGCCCCT GCGA AGGAGCCGCCTTTTTCAAGTCT CTGAGGTCCTTAACG TERM 1618 1557154 - 1557131 - T 100 -16 -5.02715 | opp_overlap 1557131, overlap 1557119 ACATGAAATGAAAAA GGCGGCCCCT GCGA AGGAGCCGCC TTTTTCAAGTCTCTG TERM 1619 1557131 - 1557154 + T 95 -13.8 -4.65838 | opp_overlap 1557131 1557119 ACATGAAATGAAAAA GGCGGCCCCT GCGA AGGAGCCGCC TTTTTCAAGTCTCTG TM1040_1459 1560106 - 1557176 - | RNAse E TERM 1620 1558180 - 1558192 + g 71 -7.7 -4.08692 | TCAGGTAGTTCGCGA TGTCC ACG GGACA TTTTACCAGCACTTC TERM 1621 1559670 - 1559698 + g 78 -4.6 -4.86731 | gap 1, opp_overlap 1559675 ATTGTCTCCATTCCG GAAATC-TCACCC TCGG GGGTGGCGACTTC TTTTGTTTCAACGGC TERM 1622 1559927 - 1559907 - G 72 -13.3 -2.52681 | overlap 1559906 1559910 GAAAACGCGAGGAAG CCATGGCGG TTG CCGCCATAG TCCACAAAAGCGGCC TERM 1623 1559986 - 1560001 + g 78 -6.8 -4.68655 | overlap 1559987 TTGCAAGATAGATAT TGCCAG CCAG CTGGCG TTTGTTTTCAGATTC TM1040_1460 1561389 - 1560700 - | HAD family hydrolase TM1040_1461 1562726 - 1561389 - | two component, sigma54 specific, Fis family transcriptional regulator TM1040_1462 1564553 - 1562751 - | periplasmic sensor signal transduction histidine kinase TERM 1624 1564255 - 1564234 - G 72 -2.1 -4.81249 | GTCGAAAGCGAAAAA TCCTGGCTC TGCA GCGCCGAGA TCAGCGCCTGGTCGC TM1040_1463 1565258 - 1564590 - | phosphoribosylformylglycinamidine synthase subunit I TM1040_1464 1565488 - 1565258 - | phosphoribosylformylglycinamidine synthetase PurS TERM 1625 1565585 - 1565555 - R 95 -11.2 -4.65895 | gap 1 TGCGCTATTGAAAAA CCCGCAAG-ACCG ACGGAG CGGCGCTTGCGGG CGAAATCTCTTAGTT TM1040_1465 1566356 - 1565595 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TM1040_1466 1566817 - 1567134 + | hypothetical protein TERM 1626 1567658 - 1567675 + G 73 -9.9 -3.58329 | TGGGCATCACCTTCA TGACAGC CCTC GCTGTCA TTTGCGGGATCTTTC TERM 1627 1568263 - 1568277 + G 73 -10 -3.61178 | opp_overlap 1568240 1568241 CTCTTGCAAAACGGC GGCCAT GTG ATGGCC TTTGGGCTCAATCAA TERM 1628 1568307 - 1568331 + G 76 -10.8 -3.74693 | gap 1 AGTGGCGCTCCTTGA TAGC-CCGCAG CTCT CTGCGGTGCTA TTTGATCCAATCAGC TM1040_1467 1567246 - 1569153 + | hypothetical protein TERM 1629 1569182 - 1569163 - f 82 -5.7 -4.99043 | opp_overlap 1569172, overlap 1569181 GCGTGACAAAGAAAA CGCCTTG CGGAGC CAAAGCG CTCTGTGTGCGAATT TM1040_1468 1569216 - 1570238 + | methionine synthase I TERM 1630 1570266 - 1570287 + T 75 -5.8 -4.56367 | opp_overlap 1570266 CATGCGTCCTTGAAA GAGCCGGT CATTGA ACAGGCTC TTTATTTATGCGCTG TM1040_1469 1571401 - 1570319 - | radical SAM family protein TM1040_1470 1571618 - 1572316 + | 5-methyltetrahydrofolate--homocysteine S-methyltransferase TERM 1631 1572342 - 1572379 + G 79 -12.7 -3.53012 | gap 1, overlap 1572345 1572346 GCGTCCCCTCGACGC GGTCGGGCGGCCCGACTT TCA AAG-CGGGCCGCTCTGTC TTTGCCACAGGGCAA TERM 1632 1572345 - 1572377 + G 76 -12.8 -3.34398 | overlap 1572342 1572346 TCCCCTCGACGCGGT CGG-GCGGCCCGACTT TCA AAG-CGGGCCGCTCTG TCTTTGCCACAGGGC TERM 1633 1572346 - 1572375 + G 85 -16.5 -3.24232 | gap 1, overlap 1572345 1572342 CCCCTCGACGCGGTC GGGCGGCCCGACTT TCA AAG-CGGGCCGCTC TGTCTTTGCCACAGG TERM 1634 1572971 - 1572951 - g 70 -4.6 -4.57073 | gap 1, overlap 1572930 1572952 1572953 GACCTGTTGGAAAAA GCCCGC-GC CTGC GCAGCGCGC ATGGGGCTCGACTTT TERM 1635 1573031 - 1573051 + G 80 -11.1 -3.8211 | opp_overlap 1573021 CGAAACCACCCTCAT GGACTGGGC CAC GCCCAATCC TTCTTCTGACTAGAA TM1040_1471 1572318 - 1573064 + | hypothetical protein TERM 1636 1573099 - 1573111 + T 100 -10.5 -4.87291 | opp_overlap 1573099, overlap 1573100 GGCCAAAGGCCAAGA GGGGC AGC GCCCC TTTTTGGTTGCCCTA TM1040_1472 1573569 - 1573147 - | cysteine desulfuration protein SufE TERM 1637 1573870 - 1573856 - g 84 -5.7 -4.89233 | overlap 1573861 CAGGAAGAGGAAAAA GCCAA CCTCC TTGGC AGCAGGAACGACAAG TM1040_1473 1573688 - 1574203 + | putative lipoprotein TERM 1638 1574299 - 1574277 - T 100 -11.3 -5.2422 | gap 1, opp_overlap 1574277 AATCACATCAAAAAA CGCGCCACAG GCTT CTG-GGCGCG TTTTTTGGTGTCAGA TERM 1639 1574277 - 1574299 + T 100 -11.3 -5.21709 | gap 1, opp_overlap 1574277 AATCACATCAAAAAA CGCGCCACAG GCTT CTG-GGCGCG TTTTTTGGTGTCAGA TM1040_1474 1575504 - 1574347 - | ribonuclease D TERM 1640 1575310 - 1575291 - G 71 -7.8 -4.09685 | overlap 1575262 CCTCATTGCGGAAAA GCTCGTAC AAGG GTTCGAGC GACAAATCCCCGGAA TM1040_1475 1576149 - 1575595 - | phosphoribosylglycinamide formyltransferase TM1040_1476 1577243 - 1576197 - | phosphoribosylaminoimidazole synthetase TM1040_1477 1578394 - 1577426 - | twin-arginine translocation pathway signal TM1040_1478 1578515 - 1579444 + | LysR family transcriptional regulator TM1040_1479 1581173 - 1579845 - | periplasmic sensor signal transduction histidine kinase TERM 1641 1580935 - 1580911 - G 71 -7.1 -4.15854 | overlap 1580915 AAACGCATCTGAAAA TTGAGCCGCTG CAA CATCGGCTGAA GGTCACTCAGGGCCG TM1040_1480 1581224 - 1582147 + | beta-lactamase-like TERM 1642 1582314 - 1582296 - T 71 -7.5 -4.18018 | CCGCCGGAGCCAAAA TCTCTTG AAATA CAAGAGA GTAACAAGGCCGCCC TERM 1643 1582341 - 1582322 - T 77 -10.6 -3.82807 | opp_overlap 1582323, overlap 1582323 ACAAGAGAGTAACAA GGCCGCCC TTTG GGGCGGCT TTTGTTTTCCTGACC TERM 1644 1582340 - 1582323 - T 79 -14.1 -2.886 | opp_overlap 1582323, overlap 1582322 CAAGAGAGTAACAAG GCCGCCC TTTG GGGCGGC TTTTGTTTTCCTGAC TERM 1645 1582323 - 1582340 + T 100 -14.1 -5.13722 | opp_overlap 1582323 1582322 CAAGAGAGTAACAAG GCCGCCC TTTG GGGCGGC TTTTGTTTTCCTGAC TM1040_1481 1583594 - 1582635 - | NAD-dependent epimerase/dehydratase TM1040_1482 1584724 - 1583603 - | GDP-mannose 4,6-dehydratase TERM 1646 1583717 - 1583734 + g 77 -3.4 -4.87893 | gap 1, overlap 1583720 CTCCTGCGCCGTGAT CTCCGGC ACCCA GCCG-AG TTTTTCCTTCGCCTT TM1040_1483 1585987 - 1584788 - | DegT/DnrJ/EryC1/StrS aminotransferase TM1040_1484 1586757 - 1585984 - | glycosyl transferase family protein TM1040_1485 1587571 - 1586750 - | NAD-dependent epimerase/dehydratase TERM 1647 1587507 - 1587475 - G 89 -12.7 -4.10161 | gap 1, overlap 1587476 CAGTATTGCGCAAAA CCTGCGCGCCTGGC GCATGA GCCAGGAGCGC-GG TTGAAACATGCCTGC TERM 1648 1587507 - 1587476 - G 72 -12.9 -3.05775 | overlap 1587475 AGTATTGCGCAAAAC CTGCGCGCCTGGC GCATGA GCCAGGAGCGCGG TTGAAACATGCCTGC TM1040_1486 1588521 - 1587568 - | hypothetical protein TERM 1649 1587630 - 1587646 + g 85 -8.7 -4.7033 | overlap 1587629 CAAGATATTTTAGCG CGAGAGC CTG GCTTTCG TTTTCTATTGCGTTG TERM 1650 1587750 - 1587772 + g 77 -7.6 -4.33105 | opp_overlap 1587745 1587748, overlap 1587752 1587767 GGGCAAAAGACACCT CATGCACACC ATG GGTGCGCAGG TTTTCCTCGTCATTG TERM 1651 1587850 - 1587864 + g 95 -7 -5.55769 | opp_overlap 1587843, overlap 1587852 AATAACCAGAGGCAG CCGCGC GGT GCGCAG TTTTTTCTTGTGCAG TM1040_1487 1588830 - 1590218 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 1652 1590300 - 1590270 - f 78 -13.3 -3.06183 | gap 1, opp_overlap 1590271 GCCATTCCGATCTAA GGGCGCGGTCGGCA CTCA TGCC-ACCGCGCCT TTCCCATCGAAGGTG TERM 1653 1590271 - 1590299 + F 95 -16.8 -3.60098 | gap 1, opp_overlap 1590270 CCATTCCGATCTAAG GGCGCGGTCGGCA CTCA TGCC-ACCGCGCC TTTCCCATCGAAGGT TERM 1654 1591603 - 1591620 + G 73 -9.1 -3.87994 | overlap 1591613 CACAAGCTTTGACAG TGGCCCG GCCC CGGGTCA TTTCTCGACCTCGGT TERM 1655 1591718 - 1591690 - g 72 -11.7 -3.28712 | CTCCGGCGCGGACAA CATGGACGTCGGC TAT ACCGACGCCGATG GGCAGGACATCACCA TERM 1656 1592484 - 1592505 + G 95 -7.3 -5.52384 | opp_overlap 1592484 GCGACATCGAGCAGA TCACCCTGA CCAA TCAGGCTGA TTTTTTTGATGCCAG TERM 1657 1592697 - 1592658 - g 70 -9.9 -3.4178 | opp_overlap 1592666, overlap 1592659 ATGACGTGATGACAA GCGCCGGTGGGGAGGAC CTCTTT GTCCTTACCACCAGCGG CGGGCGCGACACCAT TERM 1658 1592696 - 1592659 - g 72 -13.4 -2.64747 | opp_overlap 1592666, overlap 1592658 TGACGTGATGACAAG CGCCGGTGGGGAGGAC CTCTTT GTCCTTACCACCAGCG GCGGGCGCGACACCA TM1040_1488 1591016 - 1593580 + | hemolysin-type calcium-binding region TERM 1659 1593628 - 1593573 - f 74 -6.7 -4.41348 | opp_overlap 1593584 1593585, overlap 1593584 CCCGTCTGAAACAAA GCGC-CTGAAACGGTGCCCAGTCGCGG CAGG CCGCCACAGGGCCACATT-CTGCGCGC AAACGCCGCAGCCCA TM1040_1489 1593933 - 1595891 + | acetyl-coenzyme A synthetase TM1040_1490 1595898 - 1596581 + | adenylate kinase TERM 1660 1596600 - 1596643 + F 100 -15.4 -5.10933 | gap 1, opp_overlap 1596604 1596609, overlap 1596604 CGCCCTCTGCGCGAG AGCATCAGATGCCTCCG-CCC CGA GGGTCGGAGGCATCTGATTTA TTTTCTTTTGCATCC TERM 1661 1596604 - 1596639 + F 100 -22.8 -5.04377 | gap 1, opp_overlap 1596604 1596609, overlap 1596600 CTCTGCGCGAGAGCA TCAGATGCCTCCG-CCC CGA GGGTCGGAGGCATCTGA TTTATTTTCTTTTGC TERM 1662 1596639 - 1596604 - f 100 -22.8 -2.62184 | gap 1, opp_overlap 1596604 1596600, overlap 1596609 CTCTGCGCGAGAGCA TCAGATGCCTCCG-CCC CGA GGGTCGGAGGCATCTGA TTTATTTTCTTTTGC TERM 1663 1596634 - 1596609 - f 82 -15.5 -2.84634 | gap 1, opp_overlap 1596604 1596600, overlap 1596604 CGCGAGAGCATCAGA TGCCTCCG-CCC CGA GGGTCGGAGGCA TCTGATTTATTTTCT TERM 1664 1596689 - 1596679 - f 71 -8.2 -3.93256 | CAGAGGTTGAAATAA GGGC GAG GCCC GCTATCCCTCAGAGG TM1040_1491 1596744 - 1597244 + | flavin reductase-like, FMN-binding TM1040_1492 1598041 - 1597298 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1665 1597873 - 1597855 - G 71 -7.4 -4.15044 | overlap 1597863 TGGCTGCGTAATAAA GCACCAAA GCC TCTGGCGC ACCGCCGATCCGTGT TERM 1666 1597961 - 1597924 - G 72 -12 -3.29263 | gap 1, opp_overlap 1597929, overlap 1597912 1597925 AGACGCGTTCGAGAA CTGCGGAGCGGCG-CAC GTTTG GCGACGCCGCCCCACAA AAACCCAACTCACTT TERM 1667 1597960 - 1597925 - G 72 -13.3 -2.57344 | gap 1, opp_overlap 1597929, overlap 1597912 1597924 GACGCGTTCGAGAAC TGCGGAGCGGCG-CAC GTTTG GCGACGCCGCCCCACA AAAACCCAACTCACT TERM 1668 1598114 - 1598073 - R 81 -10.4 -4.07885 | gap 2, opp_overlap 1598073 1598076, overlap 1598074 1598077 1598082 TACTTTCTCTTAAAA TTGAC-G-ATACCCAGCCGA AGCC TCGGCTGGGTATCCAGTTAA TTTACGATGGCATTA TERM 1669 1598073 - 1598114 + r 81 -12.6 -3.61103 | gap 2, opp_overlap 1598073 1598074 1598077 1598082, overlap 1598076 TACTTTCTCTTAAAA TTGAC-G-ATACCCAGCCGA AGCC TCGGCTGGGTATCCAGTTAA TTTACGATGGCATTA TERM 1670 1598109 - 1598074 - R 73 -12.1 -3.04517 | gap 2, opp_overlap 1598073 1598076, overlap 1598073 1598077 1598082 ACTTTCTCTTAAAAT TGACGATACCCAGCCGA AGCC TCGGCTGGGTATC--CA GTTAATTTACGATGG TERM 1671 1598076 - 1598109 + r 75 -13.9 -2.71497 | opp_overlap 1598074 1598073 1598077 1598082, overlap 1598073 TTTCTCTTAAAATTG ACGATACCCAGCCGA AGCC TCGGCTGGGTATCCA GTTAATTTACGATGG TERM 1672 1598108 - 1598077 - R 87 -17.4 -2.74605 | opp_overlap 1598076 1598073, overlap 1598074 1598073 1598082 TTCTCTTAAAATTGA CGATACCCAGCCGA AGCC TCGGCTGGGTATCC AGTTAATTTACGATG TERM 1673 1598103 - 1598082 - R 82 -15.9 -2.8619 | opp_overlap 1598076 1598073, overlap 1598077 1598074 1598073 TTAAAATTGACGATA CCCAGCCGA AGCC TCGGCTGGG TATCCAGTTAATTTA TM1040_1493 1599129 - 1598143 - | ABC transporter, periplasmic substrate-binding protein TERM 1674 1599108 - 1599121 + g 74 -3.1 -4.74801 | gap 1 TCAGTGCCATGGCGG CG-GCT GTT AGCACG TTTTTCATCAGATTG TERM 1675 1599310 - 1599325 + r 70 -3.2 -4.82901 | overlap 1599297 GATGTGCCCCCACGT CGCG CAGGGACA CGCG TTTTTGTCAGCCCCG TM1040_1494 1600177 - 1599332 - | binding-protein-dependent transport systems inner membrane component TERM 1676 1599585 - 1599575 - G 75 -8.2 -4.22009 | overlap 1599576 ACCATTGAAGACAAA CGGC AAG GCCG CAGGCAAGCGCAGTT TM1040_1495 1601147 - 1600230 - | binding-protein-dependent transport systems inner membrane component TM1040_1496 1601939 - 1601172 - | ABC transporter related TERM 1677 1602022 - 1602041 + r 90 -12.1 -4.33165 | opp_overlap 1602022 CCTTGATCAAACAAA CGGGGGC GCAGAG GCCCCCG TTTTCATGCGTTTAG TERM 1678 1602041 - 1602022 - R 91 -12.1 -4.49556 | opp_overlap 1602022 CCTTGATCAAACAAA CGGGGGC GCAGAG GCCCCCG TTTTCATGCGTTTAG TM1040_1497 1603507 - 1602053 - | dihydropyrimidinase TERM 1679 1603526 - 1603542 + r 84 -6.5 -4.90079 | AAACTCCCTGTGGTC CGGCG ACTTTTG CGCCG TTTTGTTATTGAGCT TERM 1680 1603611 - 1603630 + r 75 -10 -3.78934 | gap 1, overlap 1603614 AGTCGCGGGAACCGC GACGGGGGC AGA GCCCCC-TC TTGTTGTCAGGCGAC TERM 1681 1603614 - 1603628 + r 79 -12.8 -3.4811 | overlap 1603611 CGCGGGAACCGCGAC GGGGGC AGA GCCCCC TCTTGTTGTCAGGCG TM1040_1498 1604887 - 1603637 - | allantoate amidohydrolase TERM 1682 1604964 - 1604976 + H 81 -3.3 -5.252 | CGGTTGGCTCCGCCC GGGTC AGT GGCTC TTTTTTCTGCCGCTG TM1040_1499 1605177 - 1605788 + | TetR family transcriptional regulator TERM 1683 1606003 - 1605983 - T 100 -19.7 -3.05769 | opp_overlap 1605986 1605998, overlap 1605976 GGTTGAAACGATAGA GCGCCGCGC AAC GCGCGGCGC TTGGCCCAAGGGGAG TERM 1684 1606050 - 1606069 + T 100 -12.1 -5.80003 | ACCGGCATCCGCAAC GGGCGGG AGCGCC CCCGCCC TTTTTTGTTTATTCC TM1040_1500 1607382 - 1606078 - | dihydropyrimidine dehydrogenase TERM 1685 1607435 - 1607413 - R 75 -12.6 -3.13164 | TTGCTAACTATGCAA GCCGCCCCAC CTG GGGGAGCGGC GCATAGCGGCTTCAG TM1040_1501 1608781 - 1607447 - | putative oxidoreductase TERM 1686 1608669 - 1608651 - G 79 -8.8 -4.1891 | opp_overlap 1608663, overlap 1608653 GCGTCGTAACAGAAA TAGCAGCG ATC CGCTGCAA CCGCGGCTTCATGCG TERM 1687 1608667 - 1608653 - G 77 -11.4 -3.6944 | opp_overlap 1608663, overlap 1608651 GTCGTAACAGAAATA GCAGCG ATC CGCTGC AACCGCGGCTTCATG TERM 1688 1609046 - 1609019 - R 100 -17.8 -4.2349 | GCTTCAGACGCAAAA CGGGGATCTGAG TTGC CCCAGATCCCCG TTCCAAAACCACACT TM1040_1502 1609340 - 1609074 - | hypothetical protein TM1040_1503 1609548 - 1609763 + | hypothetical protein TERM 1689 1609797 - 1609767 - T 83 -16.2 -3.01712 | TTCCTGCGCTGAACA CCCGTGGCCTGATG CAG CATCAGGCCACGCA GCACCGGTCAGATCG TM1040_1504 1610020 - 1609805 - | hypothetical protein TERM 1690 1610189 - 1610179 - H 76 -6.8 -4.64334 | opp_overlap 1610178 AAGGCTGCAATAAAA GGCA CGT TGCC CATTTGCGTTGCGTG TM1040_1505 1610302 - 1610730 + | hypothetical protein TERM 1691 1610819 - 1610848 + T 87 -9.9 -4.56597 | opp_overlap 1610821, overlap 1610821 1610822 AAGATCAGTCGCAAT GACGGCCCGCGGT GTCC ACCGTGGGCCATA TTTTTCCAAGAGAGC TERM 1692 1610846 - 1610821 - T 74 -12.5 -2.72661 | opp_overlap 1610821 1610819 1610822 GATCAGTCGCAATGA CGGCCCGCGGT GTCC ACCGTGGGCCA TATTTTTCCAAGAGA TERM 1693 1610821 - 1610846 + T 89 -12.5 -3.90048 | opp_overlap 1610821, overlap 1610819 1610822 GATCAGTCGCAATGA CGGCCCGCGGT GTCC ACCGTGGGCCA TATTTTTCCAAGAGA TERM 1694 1610822 - 1610845 + T 83 -16 -2.93708 | opp_overlap 1610821, overlap 1610821 1610819 ATCAGTCGCAATGAC GGCCCGCGGT GTCC ACCGTGGGCC ATATTTTTCCAAGAG TM1040_1506 1612149 - 1610887 - | surface presentation of antigens (SPOA) protein TM1040_1507 1614916 - 1612226 - | periplasmic sensor signal transduction histidine kinase TERM 1695 1613721 - 1613670 - G 78 -6.4 -4.58395 | gap 1, overlap 1613671 1613674 GCGATGCCCGAAAAA GCGATCAGACCGATGGCGGCCAGCG CTG CGCCG-CCGCCCGAGATCTGATAGT AGGCATAGCCGAGCG TERM 1696 1614836 - 1614809 - G 86 -12.6 -3.89346 | overlap 1614793 TGGCGAGCGCATAAA GCGCGCGCTGCG CCCC CGCAGCGCCTGC CGGTCCGCCCAAAAG TM1040_1508 1615326 - 1614913 - | hypothetical protein TM1040_1509 1615750 - 1615337 - | response regulator receiver protein TM1040_1510 1617180 - 1615849 - | XRE family transcriptional regulator TERM 1697 1617038 - 1617055 + g 70 -9.8 -3.4252 | overlap 1616999 1617036 GTCACAAGGAGTTTG CCGCCG ATTCTG CGGCGG TTGTGCTCGATGAGA TERM 1698 1617359 - 1617392 + H 79 -2.4 -5.1861 | opp_overlap 1617373, overlap 1617373 TGCACAATGTTGCAA GGTGATGCGTGA AAGTGAGGAG TCGCTCATCGCC TTTTTTAATCCTAGG TM1040_1511 1617419 - 1618765 + | twin-arginine translocation pathway signal TERM 1699 1618846 - 1618810 - f 100 -10.2 -5.06414 | gap 2, overlap 1618812 TTTGGTGAACAAAAA CA-GGTAGCGGGCCA-CT GCA AGACGGCCCGCTGCCCTG GTCGCCAGCACCCAA TERM 1700 1618843 - 1618812 - f 91 -13 -4.16307 | gap 1, overlap 1618810 TGGTGAACAAAAACA GGTAGCGGGCCA-CT GCA AGACGGCCCGCTGCC CTGGTCGCCAGCACC TERM 1701 1619182 - 1619170 - g 73 -4.8 -4.58773 | TTGATGAAACCAAAA CCGA CTTCC TCGG CAATCCGCTGAAAGT TERM 1702 1619262 - 1619277 + G 73 -4.6 -4.62069 | overlap 1619249 ATCATCGACTGGTCG GTGCCG CTGT CGGTGC TTTTTGCGATCCCGA TM1040_1512 1618965 - 1619996 + | inner-membrane translocator TM1040_1513 1620001 - 1621200 + | inner-membrane translocator TERM 1703 1621245 - 1621234 - g 72 -2.2 -4.74103 | TCTCGAAGTCAAAAA CGTC GGCA AACG CTTTGGTGGCCTCCA TM1040_1514 1621211 - 1621966 + | ABC transporter related TM1040_1515 1621985 - 1622740 + | ABC transporter related TERM 1704 1622834 - 1622857 + F 100 -16 -5.00884 | opp_overlap 1622829, overlap 1622827 1622831 ACTCACACGACCTGG GCCGGGCCTG TTTT CAGGTCCGGC TTTTTTCACACACCT TM1040_1516 1622952 - 1623500 + | LuxR family transcriptional regulator TM1040_1517 1623674 - 1624165 + | biotin carboxyl carrier protein TERM 1705 1624670 - 1624648 - g 74 -12.6 -3.21099 | TCCGGTGATCATCAA GGCCACCGCC GGT GGCGGCGGGC GCGGCATGAAAGTGG TERM 1706 1625510 - 1625498 - g 79 -7.7 -4.57073 | overlap 1625499 CACTGGCTGGAAAAA TGGCT TGA AGCCA ACCTTCAGGCCTGAG TM1040_1518 1624175 - 1625524 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 1707 1625537 - 1625563 + F 88 -18 -2.78816 | TGAGACATCTTTCTG GGGGCGGCGGTT TAA AACCTCCGCCCC TCTGCTACCCCGTGC TERM 1708 1625935 - 1625955 + G 93 -8.2 -5.00616 | overlap 1625926 GTGGGGGGCGTCTAC GGCGTCTC ACTTG GGGGCGCC TTTTTTGGCGAAAGC aat 1625590 - 1626222 + | leucyl/phenylalanyl-tRNA--protein transferase TM1040_1520 1626623 - 1626186 - | hypothetical protein TM1040_1521 1627075 - 1626623 - | hypothetical protein TM1040_1522 1627532 - 1627146 - | NADH dehydrogenase TM1040_1523 1628045 - 1627653 - | glyoxalase/bleomycin resistance protein/dioxygenase TM1040_1524 1628422 - 1628057 - | endoribonuclease L-PSP TM1040_1525 1629239 - 1628514 - | dienelactone hydrolase TERM 1709 1629313 - 1629277 - R 100 -16 -3.90318 | opp_overlap 1629283, overlap 1629283 CCAGCAGTTGAGAAA GAAAAAGGCCAGTGTC ACGGG GACACTGGCCTTTCGC TATTCGTATTCATCG TERM 1710 1629283 - 1629307 + r 100 -15.8 -3.78233 | opp_overlap 1629283 1629277 GTTGAGAAAGAAAAA GGCCAGTGTC ACGGG GACACTGGCC TTTCGCTATTCGTAT TERM 1711 1629307 - 1629283 - R 100 -15.8 -5.38054 | opp_overlap 1629283, overlap 1629277 GTTGAGAAAGAAAAA GGCCAGTGTC ACGGG GACACTGGCC TTTCGCTATTCGTAT clpX 1630609 - 1629344 - | ATP-dependent protease ATP-binding subunit TERM 1712 1630693 - 1630665 - R 74 -11.8 -3.05384 | gap 1 TTTGCCCCGATGTAA GGCCAGCTTAGGA CAGC TCCCAAGC-GGCC ACAATGTCAAATTGT TM1040_1527 1631417 - 1630761 - | ATP-dependent Clp protease proteolytic subunit ClpP TM1040_1528 1631689 - 1632696 + | transcriptional regulator TM1040_1529 1632820 - 1633362 + | hypothetical protein TM1040_1530 1633394 - 1635007 + | thiamine pyrophosphate enzyme-like TPP-binding TERM 1713 1635177 - 1635143 - g 75 -8.4 -4.15106 | overlap 1635134 GATCAAGGTCGAAAA CCCAACCACGGGCGGC GAC GACACCCGTCAATGGG GCAAGAGCGTCGCCG TM1040_1531 1634991 - 1636193 + | L-carnitine dehydratase/bile acid-inducible protein F TERM 1714 1636277 - 1636304 + F 81 -10.7 -4.08216 | opp_overlap 1636287 CCCGCGCTGCATCCA CCAGCACAAAG CACCGT TTTTGTGCTGG TTTTCGCCCACATCC TERM 1715 1636572 - 1636599 + G 84 -10.6 -4.14739 | gap 1, overlap 1636567 GCACCGCTGGCCACC TTGGG-GCGGTGT TGG ACGCCGCGCCCGA TTTTGCCCTCGGTCA TERM 1716 1637007 - 1636977 - g 76 -10.4 -3.72576 | TTGCCCTCGAGGAAA CCGGCGACTTCGAC CGG GCGGAAATCACCGG ACGTCAGGCACTTTG TM1040_1532 1636457 - 1637821 + | hypothetical protein TERM 1717 1637899 - 1637881 - g 71 -9.5 -3.72576 | CGGCGCCCGATCAAA GCAGCGC TCAAC GCGCCGC CCCCACATCCACCGG TERM 1718 1638964 - 1638983 + G 76 -6.4 -4.46775 | overlap 1638966 1638969 TCATCACCAAGGTCG GCCAGCAA AGCC TTGCTGTC TTTGTCTTTTCCATG TM1040_1533 1637844 - 1639151 + | hypothetical protein mdoG 1639148 - 1640674 + | glucan biosynthesis protein G TERM 1719 1641657 - 1641669 + G 71 -6.3 -4.36914 | overlap 1641651 GAGGCAGCAGCCTCA TCATG AGC CATGA TTTTGTGGAGGCAGG TERM 1720 1641786 - 1641821 + G 74 -6.9 -4.36914 | gap 2, opp_overlap 1641750 1641774, overlap 1641778 ATATCCAGCGCGACC GGCGCTGGTG-T-CAGG GCAA CCTGCAACACCTGCGTC TTTTGTCGGCAACCG TM1040_1535 1640675 - 1642567 + | glucosyltransferase MdoH TERM 1721 1642570 - 1642615 + T 80 -5.4 -4.8622 | gap 3, overlap 1642556 1642555 1642573 GGCCGCGGAGTGAGA GGTTCCGTGGCGTTTGCGGGGGC TCT GCCCCCGCAC-C-CC-CGGGATA TTTTTCGTTAGAAGA TERM 1722 1642573 - 1642613 + T 81 -10.4 -4.05402 | gap 2, overlap 1642556 1642555 1642570 CGCGGAGTGAGAGGT TCCGTGGCGTTTGCGGGGGC TCT GCCCCCGCACCC-CCG-GGA TATTTTTCGTTAGAA TERM 1723 1642647 - 1642634 - T 72 -3.7 -4.77165 | opp_overlap 1642641, overlap 1642636 TTCGTTAGAAGAAAA GAGGC GTCA GCCAC CGGTCTGTGTATCAG TM1040_1536 1643489 - 1642659 - | putative polyhydroxybutyrate depolymerase TERM 1724 1643207 - 1643176 - G 71 -8.8 -3.72051 | gap 1, overlap 1643179 TGCAAGAAGGTGAAA TCAT-CCCGCCCG CCAAACT CGGGCAGGAATGA CCAGCTTCGCACGCC TM1040_1537 1644013 - 1643486 - | rhodanese-like protein TERM 1725 1644498 - 1644512 + G 70 -4.2 -4.57482 | overlap 1644500 CTGGCTGCCCGCGCT TGGGCT ATC AGCCAA TTTCTTTCTGGATGG TM1040_1538 1644301 - 1647162 + | putative monovalent cation/H+ antiporter subunit A TM1040_1539 1647167 - 1647520 + | putative monovalent cation/H+ antiporter subunit C TM1040_1540 1647517 - 1649139 + | putative monovalent cation/H+ antiporter subunit D TM1040_1541 1649139 - 1649636 + | putative monovalent cation/H+ antiporter subunit E TM1040_1542 1649633 - 1649902 + | putative monovalent cation/H+ antiporter subunit F TERM 1726 1650050 - 1650087 + G 76 -12.7 -3.28712 | gap 1, opp_overlap 1650032, overlap 1650032 1650017 CACCACGCTGGGCGT CGGTGGCGTGCTTC-TGG GCT CCATGCTGCACGCCATCG TTGTCGAAGGCCGCA TM1040_1543 1649913 - 1650290 + | putative monovalent cation/H+ antiporter subunit G TERM 1727 1650317 - 1650295 - f 81 -16.2 -2.53263 | overlap 1650268 1650266 1650263 CCGACGCCTAACGCA GGGGGCCGCG GCC CGCGCCCCCC GGAGGCCCATGATGC TERM 1728 1652055 - 1652075 + G 72 -11.1 -3.31269 | overlap 1652047 1652060 1652063 CGGGCACAGCGCCGG GCGCCTGTG TGG CAGAGGCGC TTGATCTGATGTGCC TM1040_1544 1650329 - 1652491 + | AIR synthase related protein-like TM1040_1545 1653561 - 1652518 - | tRNA 2-selenouridine synthase TM1040_1546 1653637 - 1654122 + | MarR family transcriptional regulator TM1040_1547 1654457 - 1654155 - | hypothetical protein TERM 1729 1654548 - 1654525 - R 100 -16.7 -4.3208 | CCGCAGAACGCAAAA CCCCGGCGG AACGAA CCGCCGGGG TCTCGGAAAGTGCCG TM1040_1548 1656215 - 1654635 - | 5'-nucleotidase-like TERM 1730 1656626 - 1656637 + G 74 -7.2 -4.43208 | overlap 1656620 1656619 CAAATGGGAGCCCTC GCGC GGGG GCGC TTTGTTTCCCCATCT TM1040_1549 1656405 - 1656743 + | hypothetical protein TM1040_1550 1656807 - 1657865 + | dihydroorotate dehydrogenase 2 TERM 1731 1657946 - 1657990 + T 95 -17.7 -3.53012 | opp_overlap 1657935 1657970 AAAAGCCCCTTCCCG TTGGGCCCGGCAGGCCGCGCC AAA GGCGCGGCCTGCCCCCCGCGA TTTGCAGAGCAGAGC TM1040_1551 1659422 - 1658100 - | MATE efflux family protein TM1040_1552 1659959 - 1659441 - | hypothetical protein TM1040_1553 1660378 - 1659956 - | phenylacetic acid degradation-related protein TM1040_1554 1660504 - 1660872 + | MerR family transcriptional regulator TM1040_1555 1660885 - 1661163 + | hypothetical protein TM1040_1556 1661412 - 1661813 + | MerR family transcriptional regulator TERM 1732 1661829 - 1661794 - f 77 -8.3 -4.25256 | gap 2, opp_overlap 1661794, overlap 1661795 CCTCCATGAAAACAA GCGCCAAGGCGGCCGAG TAAC CTCG-CCGCCCTGCC-C GACTGATTGAACCGC TERM 1733 1662203 - 1662216 + G 81 -4.5 -4.96848 | gap 1, overlap 1662203 1662204 CCTATGTGATCGGCA C-CGCC GTG GGCGAG TTTTTCTCTGGCGCG TM1040_1557 1661878 - 1663659 + | acyl-CoA dehydrogenase-like TM1040_1558 1663752 - 1663964 + | hypothetical protein TERM 1734 1664360 - 1664349 - g 84 -5.8 -4.88228 | ACCGAAGAGCAAAAA CAGC GCTG GCTG CCCAAGATGGTGTCC TM1040_1559 1664004 - 1665167 + | acyl-CoA dehydrogenase-like TERM 1735 1665428 - 1665446 + F 71 -8.8 -3.83502 | opp_overlap 1665414 ACCCCCGCCGCGACA TCGCCACT GGG AGGGGCGA TTTGATATGAAACTC TERM 1736 1665731 - 1665716 - g 70 -3.2 -4.63932 | gap 1, opp_overlap 1665725 1665726, overlap 1665725 TACGCCCGAAGAAAA GCGC-GA AAT CCTGCGC TGGCAGCTTTGGGAC TM1040_1560 1665453 - 1666085 + | glutathione S-transferase-like TM1040_1561 1666096 - 1667307 + | acetyl-CoA acetyltransferase TERM 1737 1668546 - 1668508 - g 89 -4.5 -5.24531 | gap 1, overlap 1668511 ACGCCGGAGAAAAAA GAGGCGCTGCTGGCGCAG ATCA CCGCAACAGCAG-ATCTC GACGCCCTCAAAGGC TERM 1738 1669516 - 1669498 - g 73 -4.5 -4.59109 | opp_overlap 1669487 GAGATGGCCGAAAAA GGCCAGA CCTTC TATGGCC GGTTTGCGCCGGAAG TM1040_1562 1667347 - 1669548 + | 3-hydroxyacyl-CoA dehydrogenase TERM 1739 1669572 - 1669598 + T 100 -13 -5.75342 | overlap 1669574 GCCTTCATGCTGATA TGGCCGCCCC TGTCTTT GGGGCGGCTA TTTTTTTTGCGAGGC TERM 1740 1669574 - 1669596 + T 95 -13.4 -4.52949 | overlap 1669572 CTTCATGCTGATATG GCCGCCCC TGTCTTT GGGGCGGC TATTTTTTTTGCGAG TERM 1741 1669809 - 1669841 + T 85 -12.7 -3.72893 | gap 1, opp_overlap 1669809 GCTCCAACATGAAAA CACCCCGC-AGCCG ACCAAG CGGCGCGCGGGGTG TTTGCTCAGGAGGTG TERM 1742 1669841 - 1669809 - T 100 -14.9 -4.4261 | gap 1, opp_overlap 1669809 GCTCCAACATGAAAA CACCCCGCA-GCCG ACCAAG CGGCGCGCGGGGTG TTTGCTCAGGAGGTG TM1040_1563 1670569 - 1669877 - | hypothetical protein TM1040_1564 1671362 - 1670697 - | hypothetical protein TERM 1743 1671957 - 1671932 - g 71 -5.3 -4.42464 | overlap 1671934 1671935 AAGCCGCCAAAGAAA GACTGCAGGGC GCAG GCCCTACCCTC ATTGAAGTGCCGGAC TM1040_1565 1671523 - 1673154 + | AMP-dependent synthetase and ligase TM1040_1566 1673972 - 1673331 - | hypothetical protein TM1040_1567 1674284 - 1675339 + | hypothetical protein TERM 1744 1675380 - 1675361 - T 100 -12.1 -5.38054 | opp_overlap 1675361 1675356 GTTTACAAACAAAAA GGCCGGG AGCATG CCCGGCC TATACTTTGCGTTTT TERM 1745 1675361 - 1675380 + T 74 -12.1 -3.05455 | opp_overlap 1675361, overlap 1675356 GTTTACAAACAAAAA GGCCGGG AGCATG CCCGGCC TATACTTTGCGTTTT TM1040_1568 1676660 - 1675407 - | sporulation related TERM 1746 1676762 - 1676733 - R 77 -11.6 -3.62522 | gap 1, opp_overlap 1676735 CAATCTGGGCAACAA TATGGCG-CGATC CGTCT GATCGTCGCCATA TTGCGGGGGTGGCCC TM1040_1569 1677474 - 1676842 - | uracil phosphoribosyltransferase TERM 1747 1676991 - 1677024 + g 81 -4.6 -5.0133 | gap 1 CTTCGGGCGAGGCCA GCAGGC-ACAAGAAC CGAAT GTTGTTGGCGCCTGC TTTTTTCAGCAGGTC TM1040_1570 1678773 - 1677559 - | phosphopentomutase deoA 1680077 - 1678773 - | thymidine phosphorylase TERM 1748 1679505 - 1679517 + g 84 -9.1 -4.57073 | overlap 1679503 CACCAATGCCTCGGG GCTGG CAG CCAGC TTTTTCGAAAGGATC TERM 1749 1679987 - 1679958 - G 91 -13.5 -3.83502 | gap 1 GATCGCCATAGCAAA GGCGCCCGCCTGCG CGT CGCTGACGG-CGCC ACTGGCAAGCCCCTC TM1040_1572 1680576 - 1680082 - | cytidine deaminase TERM 1750 1681955 - 1681935 - g 76 -12.5 -3.40403 | TTGCGCGGACCACAA CCTCAGCCG AGG CGGCTGCGG CCTACAAGGGGGAGC TERM 1751 1682800 - 1682838 + G 70 -4.5 -4.52589 | gap 2, overlap 1682801 CACCGGGGAGCGTCT GCGCGCAGCTTTGGCGATC CTC GA-CGACAA-GCGGCGCGA TTTTGTCTACGAGGG TM1040_1573 1680851 - 1683130 + | malic enzyme TM1040_1574 1683467 - 1685359 + | AMP-dependent synthetase and ligase TERM 1752 1685376 - 1685395 + T 74 -12.1 -3.21218 | opp_overlap 1685376 ACAGAACAAAGAAAA GCGGCCC GCCTTG GGGCCGC TTCCTCGTCCACGCT TERM 1753 1685395 - 1685376 - T 100 -12.1 -5.16038 | opp_overlap 1685376 ACAGAACAAAGAAAA GCGGCCC GCCTTG GGGCCGC TTCCTCGTCCACGCT TM1040_1575 1685641 - 1685432 - | CsbD-like TM1040_1576 1686308 - 1685763 - | hypothetical protein TERM 1754 1687092 - 1687081 - g 78 -7.2 -4.67011 | opp_overlap 1687080 AACCCCAGCCAAAAA GCCG AACG CGGC CTATTGGCCCAATTG TM1040_1577 1686460 - 1687896 + | amidase ppnK 1688762 - 1688007 - | inorganic polyphosphate/ATP-NAD kinase TERM 1755 1690009 - 1689994 - g 71 -9 -3.75738 | TATCACCACCAACAA GAACGG CATC CCGTTC GACCCGGAAAAGCCC TM1040_1579 1688939 - 1690234 + | serine hydroxymethyltransferase TERM 1756 1690264 - 1690289 + F 100 -19.7 -5.75342 | overlap 1690256 CGAGGTTGCTCTGCA CCGCCGCGCTC TTTC GGGCGCGGCGG TTTTTTTTGCGCCGG TM1040_1580 1690351 - 1691043 + | hypothetical protein TERM 1757 1691058 - 1691021 - T 78 -14.2 -2.55015 | gap 1, opp_overlap 1691018 1691017 1691013, overlap 1691017 AGTTGATCGAAGCGA TTGGGCCAGAGCC-GCT GATCT AGCTGGCTCCGGCCCCA TAGGTCTGTTTCGAG TM1040_1581 1691368 - 1691081 - | hypothetical protein TERM 1758 1691502 - 1691477 - R 70 -11.9 -2.62616 | gap 1 GCAGCCTTCAGACGA CGCAGCACATCC TGC GG-CGTGCTGCG GGTGGCTGCGCCAAA TM1040_1582 1692153 - 1691455 - | phage shock protein A, PspA TERM 1759 1691932 - 1691967 + g 80 -10.3 -4.09117 | opp_overlap 1691922 CAAATCCGCGATCCG CGCGTCAAGGGTTGC GATCTG GCGCCCCTCGGCGCG TTCTTTCTGGATCAA TERM 1760 1692216 - 1692204 - R 78 -6.3 -4.74103 | CGTTCAAGCTAAAAA TGAAC AGC GTTCA CGGAATTGGAGATTT TM1040_1583 1692826 - 1692230 - | TetR family transcriptional regulator TERM 1761 1693248 - 1693272 + G 80 -9.9 -4.1421 | opp_overlap 1693250 1693251 1693253, overlap 1693250 1693251 1693253 GATCACCGGCATGGA AAGCACCCGCG AAG CGCGGGTGATC TTGTTGTTTCATCTC TERM 1762 1693270 - 1693250 - g 82 -12.5 -3.65351 | opp_overlap 1693250 1693248 1693251 1693253, overlap 1693251 1693253 TCACCGGCATGGAAA GCACCCGCG AAG CGCGGGTGA TCTTGTTGTTTCATC TERM 1763 1693250 - 1693270 + G 82 -12.5 -3.65071 | opp_overlap 1693250 1693251 1693253, overlap 1693248 1693251 1693253 TCACCGGCATGGAAA GCACCCGCG AAG CGCGGGTGA TCTTGTTGTTTCATC TERM 1764 1693269 - 1693251 - g 79 -16 -2.78996 | opp_overlap 1693251 1693250 1693248 1693253, overlap 1693250 1693253 CACCGGCATGGAAAG CACCCGCG AAG CGCGGGTG ATCTTGTTGTTTCAT TERM 1765 1693251 - 1693269 + G 79 -16 -2.77958 | opp_overlap 1693250 1693251 1693253, overlap 1693250 1693248 1693253 CACCGGCATGGAAAG CACCCGCG AAG CGCGGGTG ATCTTGTTGTTTCAT TERM 1766 1693253 - 1693267 + G 70 -12.8 -2.92037 | opp_overlap 1693251 1693250 1693253, overlap 1693251 1693250 1693248 CCGGCATGGAAAGCA CCCGCG AAG CGCGGG TGATCTTGTTGTTTC TERM 1767 1693267 - 1693253 - g 70 -12.8 -2.94144 | opp_overlap 1693253 1693251 1693250 1693248, overlap 1693251 1693250 CCGGCATGGAAAGCA CCCGCG AAG CGCGGG TGATCTTGTTGTTTC TM1040_1584 1692970 - 1693896 + | hypothetical protein TM1040_1585 1694215 - 1693850 - | hypothetical protein TERM 1768 1693983 - 1693999 + g 75 -2.2 -5.00616 | opp_overlap 1693983 AGCTCTGTCAGATAA GCCC TGAGACGGC GGGC TTTTTTGACGAGCGC TM1040_1586 1694338 - 1695096 + | alpha/beta hydrolase fold TERM 1769 1695133 - 1695110 - T 70 -10.2 -3.33969 | gap 1, opp_overlap 1695110 1695110, overlap 1695102 GAACGCAGCGCAGAA GCCCTGGGGGC GCT GCCCCC-GGCC CTTGTCGGGCCTCCC TM1040_1587 1696058 - 1695177 - | DNA adenine methylase Dam TERM 1770 1696166 - 1696147 - R 100 -12.8 -5.60993 | opp_overlap 1696147 GGGCTGACAAAAAAA GGGGGCAC CTGC GCGCCCCC TTTCATGTTGATCCG TERM 1771 1696147 - 1696166 + r 79 -10.6 -3.95022 | opp_overlap 1696147 GGGCTGACAAAAAAA GGGGGCAC CTGC GCGCCCCC TTTCATGTTGATCCG TM1040_1588 1699753 - 1696199 - | Outer membrane autotransporter barrel TM1040_1589 1701434 - 1700175 - | TRAP dicarboxylate transporter- DctM subunit TERM 1772 1700325 - 1700309 - G 71 -6.5 -4.23281 | AAGACGCAATATAAA GCCCG ACCCCAA CGGGC GGTGTCAGCAAGCCC TERM 1773 1700828 - 1700807 - G 71 -8.7 -3.72909 | gap 1, opp_overlap 1700824, overlap 1700804 1700802 GCAAGCAATATAGAA GCGCC-GAGA ACG CCTCTGGCGC GGTGAACCAGCTGCC TM1040_1590 1701970 - 1701431 - | tripartite ATP-independent periplasmic transporter DctQ TERM 1774 1701981 - 1702024 + r 70 -11.7 -3.04461 | ATCATTTCGCTCTCC GCC-TCACTGGCGCGCCCCTC TCGC GAGGGGC-CGCCGCCGATGGC TGTTGAGGGTCAGTC TM1040_1591 1703014 - 1702034 - | TRAP dicarboxylate transporter- DctP subunit TM1040_1592 1703613 - 1703050 - | 3-hydroxyanthranilate 3,4-dioxygenase TM1040_1593 1704630 - 1703743 - | hypothetical protein TERM 1775 1704612 - 1704570 - G 86 -14.9 -3.28712 | gap 1, overlap 1704571 1704578 GTTTGCTTTGCACAA TCGATAC-AGCCGCGCCGCC GTAG GACAGCGCGGCCAGTATCGC CAGCCCCTCTCCGAT TERM 1776 1704611 - 1704571 - G 85 -18.4 -2.57132 | gap 1, overlap 1704570 1704578 TTTGCTTTGCACAAT CGATAC-AGCCGCGCCGCC GTAG GACAGCGCGGCCAGTATCG CCAGCCCCTCTCCGA TERM 1777 1704603 - 1704578 - G 81 -16.1 -2.96711 | overlap 1704571 1704570 TGCACAATCGATACA GCCGCGCCGCC GTAG GACAGCGCGGC CAGTATCGCCAGCCC TM1040_1594 1705593 - 1704640 - | dihydrodipicolinate synthetase TM1040_1595 1705772 - 1706560 + | L-aspartate dehydrogenase TM1040_1596 1706570 - 1707535 + | LysR family transcriptional regulator TM1040_1597 1707581 - 1709071 + | succinate semialdehyde dehydrogenase TM1040_1598 1710358 - 1709078 - | twin-arginine translocation pathway signal TM1040_1599 1711800 - 1710889 - | hemolysin-type calcium-binding region TERM 1778 1711551 - 1711541 - G 91 -5.4 -5.40072 | overlap 1711542 TTGGCTGCAAAAAAA TCCT CGT AGGA GAGCGCCATGTCCGA TERM 1779 1712291 - 1712263 - H 79 -10.2 -3.87364 | opp_overlap 1712265, overlap 1712264 GTCACAAGAAGACAA CCCTGGCCCTCA GTGTT TGCGGGCCAGGT ACCCGCGCCCCCCAT TERM 1780 1712290 - 1712264 - H 77 -13.7 -2.91696 | opp_overlap 1712265, overlap 1712263 TCACAAGAAGACAAC CCTGGCCCTCA GTGTT TGCGGGCCAGG TACCCGCGCCCCCCA TM1040_1600 1712411 - 1712728 + | hypothetical protein TM1040_1601 1713351 - 1712755 - | hypothetical protein TERM 1781 1713287 - 1713277 - G 90 -5.4 -5.2696 | opp_overlap 1713277 TGAAAACTCAAAAAA GTGA TTT TCAC TCTGATCTGAAACTG TM1040_1602 1714235 - 1713369 - | hypothetical protein TERM 1782 1714238 - 1714227 - G 83 -4.4 -5.04987 | AACATTTGCAAAAAA TTCG GTCA CGAA AAATCACTCCAATGA TERM 1783 1714425 - 1714444 + r 89 -12.8 -4.00934 | opp_overlap 1714425 CCCAGAAACGAAAAA GCCCCGCT CGAT GGCGGGGC TTTCGTCTTTGAGGT TERM 1784 1714444 - 1714425 - R 100 -12.1 -5.04601 | opp_overlap 1714425 CCCAGAAACGAAAAA GCCCCGC TCGATG GCGGGGC TTTCGTCTTTGAGGT TM1040_1603 1714868 - 1714470 - | hypothetical protein TM1040_1604 1715674 - 1714865 - | hypothetical protein TM1040_1605 1716110 - 1715676 - | hypothetical protein TM1040_1606 1716403 - 1716107 - | hypothetical protein TM1040_1607 1716757 - 1716410 - | hypothetical protein TERM 1785 1716516 - 1716497 - G 71 -8.6 -4.07885 | gap 1 CAGCGCTTCGGAAAA GGGTGCAGC CGC GCTG-ACCC GCCCCCAACCGAGCC TERM 1786 1716682 - 1716656 - G 100 -15.2 -4.46514 | AGGCACGTAAATAAA GAGACCGGAGCC CTT GGCTCCAATCTC CCATGCGAGTTCAGT TM1040_1608 1717235 - 1716735 - | hypothetical protein TM1040_1609 1718308 - 1717238 - | hypothetical protein TM1040_1610 1719249 - 1718305 - | hypothetical protein TM1040_1611 1723772 - 1719249 - | hypothetical protein TERM 1787 1722221 - 1722203 - G 73 -5.2 -4.63527 | overlap 1722206 CCATCAGCTCAAAAA CATTCGCA CCT TGCGAGCG GGCGTTCCAATCGGT TERM 1788 1722505 - 1722516 + g 71 -5.8 -4.42386 | opp_overlap 1722505 1722506 ACTGCATCTGTCAAA GCTG AAGG CAGC TTTTGTCCCTCAGGG TERM 1789 1723808 - 1723830 + r 73 -9.2 -4.02817 | opp_overlap 1723798 1723808 1723807 1723805 AGAACGTGGAAAGAT CCTCTCGAAT TGG ATTCAAGAGG TTGTTATTGTGAGGA TM1040_1612 1724542 - 1724207 - | hypothetical protein TM1040_1613 1725090 - 1724641 - | hypothetical protein TERM 1790 1725153 - 1725122 - R 77 -12.3 -3.35046 | gap 1, overlap 1725120 1725140 TCAGTGGTTCAAACA GGCCGGG-GGAACG AACCA CCTTCCGCCCGGCC CTACCGTTCCTGAGA TM1040_1614 1725638 - 1725189 - | hypothetical protein TERM 1791 1725462 - 1725480 + g 72 -11.6 -3.35798 | CTTGCCTTTCTTCGT CCCGCGGG TGG CCAGCGGG TTGTGAGTCACAAGT TERM 1792 1725680 - 1725667 - R 79 -9.5 -4.18367 | opp_overlap 1725665 CAGGATAGAGAGAAA GCGCC TAGG GGCGC GGATTTATAGGCCGA TM1040_1615 1725983 - 1725699 - | hypothetical protein TERM 1793 1725956 - 1725967 + g 88 -7.2 -4.88918 | ATGCAGGTTTTGAGG CCGC CGAA GCGG TTTTCTTTGCGGTCA TM1040_1616 1726378 - 1726025 - | hypothetical protein TM1040_1617 1726833 - 1726378 - | hypothetical protein TM1040_1618 1726834 - 1727211 + | hypothetical protein TM1040_1619 1727833 - 1727252 - | phiE125 gp8 hypothetical protein TERM 1794 1727690 - 1727662 - G 76 -12.4 -3.29043 | AAGTCTGTGTGATAA TGGCCCGCCCAA GGATA CCGGACGGGCCA TCTAGGTAGTCCACT TERM 1795 1727822 - 1727843 + g 93 -7.9 -5.05782 | CGCTGGCGTGGTAAG GGTCAGACG CATT CGTCAGGCC TTTTTTGCAGTGGAT TM1040_1620 1728298 - 1727837 - | hypothetical protein TM1040_1621 1728756 - 1728295 - | hypothetical protein TM1040_1622 1730139 - 1728820 - | hypothetical protein TERM 1796 1729740 - 1729720 - G 86 -12.5 -3.96148 | opp_overlap 1729719 1729718 1729716 TTCCGGCACCAGAAA TCCGCCGGC GGT GCCGGTGGA CATGTTCTGGCTGGC TERM 1797 1730154 - 1730170 + r 80 -11.5 -3.84451 | overlap 1730155 TGGTCAGTTCCTCAT TGCGGCG CGC CGCCGCG TTTCGATTTCAGCGG TERM 1798 1730155 - 1730169 + r 75 -12.8 -2.90349 | overlap 1730154 GGTCAGTTCCTCATT GCGGCG CGC CGCCGC GTTTCGATTTCAGCG TM1040_1623 1731089 - 1730142 - | serine peptidase TM1040_1624 1732372 - 1731086 - | Phage portal protein, HK97 TERM 1799 1732158 - 1732128 - G 70 -4.7 -4.56597 | gap 1, overlap 1732132 GTCTTCTGGTAAAAA TGCAGCGGCGTCAT CGCA AAGACGCCGGT-CA AGATCCGAAGCGCCT TM1040_1625 1734075 - 1732375 - | phage terminase TM1040_1626 1734631 - 1734086 - | hypothetical protein TM1040_1627 1734735 - 1735055 + | hypothetical protein TERM 1800 1735089 - 1735064 - f 100 -15.5 -4.15632 | gap 1 ACTATGATAGAGAAA GCCCGGCAGCGA TGA TCGCT-CCGGGC ACATTACAGGCGGGT TM1040_1628 1735346 - 1735738 + | hypothetical protein TERM 1801 1736132 - 1736092 - T 75 -12.7 -3.05384 | GCCTCCGTTACTTAA GGCGTTACGTTTGCGTT ACGCTCG AGCTCAAACGTAACGCC CATCCAACCTATCAG TERM 1802 1736158 - 1736175 + T 76 -6.9 -4.53602 | ATCAGATGCCATCCT CCCCCTC GTTC GAGGCGG TTTCTTTGATATAGC TM1040_1629 1738018 - 1736144 - | hypothetical protein TM1040_1630 1738329 - 1738048 - | hypothetical protein TM1040_1631 1739175 - 1738333 - | hypothetical protein TM1040_1632 1739651 - 1739172 - | hypothetical protein TM1040_1633 1740522 - 1739641 - | hypothetical protein TM1040_1634 1740797 - 1740519 - | hypothetical protein TERM 1803 1740850 - 1740817 - R 95 -13.1 -4.56597 | opp_overlap 1740803, overlap 1740818 CTGCCCCCTGAAAAA GGGGCGCGTAATTGC ATTC GCCATCACGCGCCCA GGTTCCGCAGGGAGG TERM 1804 1740849 - 1740818 - R 90 -16.6 -3.33744 | opp_overlap 1740803, overlap 1740817 TGCCCCCTGAAAAAG GGGCGCGTAATTGC ATTC GCCATCACGCGCCC AGGTTCCGCAGGGAG TM1040_1635 1741440 - 1740964 - | hypothetical protein TM1040_1636 1741814 - 1742167 + | XRE family transcriptional regulator TM1040_1637 1742333 - 1743016 + | hypothetical protein TM1040_1638 1743864 - 1742974 - | hypothetical protein TERM 1805 1743752 - 1743766 + g 90 -5.7 -5.29445 | overlap 1743761 ACTGGACTCTCATTA TGACC TTTTT GGTCA TTTTTGTTATTGACG TM1040_1639 1744087 - 1744389 + | hypothetical protein TM1040_1640 1744698 - 1745402 + | hypothetical protein TM1040_1641 1745594 - 1745950 + | hypothetical protein TERM 1806 1747111 - 1747098 - g 89 -6.7 -5.15167 | overlap 1747103 GAGCACCAAGAAAAA CACCA GACC TGGTG ATGCCGGCGCGGAAA TERM 1807 1747459 - 1747443 - g 89 -10.1 -4.67234 | AGCCAAGGGCAAAAA GCACCGC AAC ACGGTGC TGACCCGTCACCTGA TM1040_1642 1745947 - 1747818 + | ParB-like nuclease TM1040_1643 1748176 - 1748427 + | hypothetical protein TERM 1808 1748896 - 1748884 - g 78 -4.8 -4.82667 | TCACTACATCAAAAA GTGG TTCAC CCAC TGGAGGCTGGTTGTC TM1040_1644 1748417 - 1749649 + | hypothetical protein TERM 1809 1750389 - 1750412 + T 75 -11.6 -3.44146 | opp_overlap 1750387, overlap 1750390 CTCTCCAACGATATC CGGGGCGCGG TGGC CCGCGTCCCA TTCCTTCTGCCAGGC TERM 1810 1750390 - 1750411 + T 80 -15.1 -2.66274 | opp_overlap 1750387, overlap 1750389 TCTCCAACGATATCC GGGGCGCGG TGGC CCGCGTCCC ATTCCTTCTGCCAGG TM1040_1645 1751012 - 1750371 - | resolvase-like protein TM1040_1646 1751144 - 1751659 + | hypothetical protein TM1040_1647 1752096 - 1751638 - | hypothetical protein TERM 1811 1751998 - 1751986 - G 70 -3.3 -4.65933 | overlap 1751987 CACGTCCAAAATAAA GCGGT TAA ACCGT CCTGGCGGCAGCTGT TM1040_1648 1752485 - 1752165 - | hypothetical protein TERM 1812 1752522 - 1752541 + r 73 -12.1 -2.97289 | opp_overlap 1752522, overlap 1752516 1752536 TCAAGAAACGAAAAA GCCCCGG CATTCA CCGGGGC TCTCGTCTTTGAGGT TERM 1813 1752541 - 1752522 - R 100 -12.8 -5.09521 | opp_overlap 1752516 1752522 1752536 TCAAGAAACGAAAAA GCCCCGGC ATTC ACCGGGGC TCTCGTCTTTGAGGT TM1040_1649 1752965 - 1752567 - | hypothetical protein TM1040_1650 1753771 - 1752962 - | hypothetical protein TM1040_1651 1754207 - 1753773 - | hypothetical protein TM1040_1652 1754461 - 1754204 - | hypothetical protein TM1040_1653 1754854 - 1754507 - | hypothetical protein TERM 1814 1754613 - 1754594 - G 71 -8.6 -4.07885 | gap 1 CAGCGCTTCGGAAAA GGGTGCAGC CGC GCTG-ACCC GCCCCCAACCGAGCC TERM 1815 1754779 - 1754753 - G 100 -15.2 -4.46514 | AGGCACGTAAATAAA GAGACCGGAGCC CTT GGCTCCAATCTC CCATGCGAGTTCAGT TM1040_1654 1755464 - 1754832 - | hypothetical protein TM1040_1655 1756456 - 1755461 - | hypothetical protein TM1040_1656 1757919 - 1756975 - | hypothetical protein TM1040_1657 1762442 - 1757916 - | hypothetical protein TERM 1816 1760891 - 1760873 - G 73 -5.2 -4.63527 | overlap 1760876 CCATCAGCTCAAAAA CATTCGCA CCT TGCGAGCG GGCGTTCCAATCGGT TERM 1817 1761175 - 1761186 + g 71 -5.8 -4.42386 | opp_overlap 1761175 1761176 ACTGCATCTGTCAAA GCTG AAGG CAGC TTTTGTCCCTCAGGG TERM 1818 1762246 - 1762256 + g 71 -6.8 -4.1552 | overlap 1762235 ATTTGCTTCTGTGCC GCAG AAG CTGC TTTCTTGAAACCATC TM1040_1658 1762471 - 1762809 + | hypothetical protein TM1040_1659 1763731 - 1762850 - | hypothetical protein TERM 1819 1763276 - 1763286 + g 70 -3.2 -4.66535 | overlap 1763283 TCGGACACTTGCTCT CATC TCC GGTG TTTCTTTTACACCTT TM1040_1660 1764332 - 1763994 - | hypothetical protein TM1040_1661 1764880 - 1764431 - | hypothetical protein TERM 1820 1764943 - 1764912 - R 77 -12.3 -3.35046 | gap 1, overlap 1764910 1764930 TCAGTGGTTCAAACA GGCCGGG-GGAACG AACCA CCTTCCGCCCGGCC CTACCGTTCCTGAGA TM1040_1662 1765428 - 1764979 - | hypothetical protein TERM 1821 1765470 - 1765457 - R 79 -9.5 -4.18367 | opp_overlap 1765455 CAGGATAGAGAGAAA GCGCC TAGG GGCGC GGATTTATAGGCCGA TM1040_1663 1765773 - 1765489 - | hypothetical protein TERM 1822 1765746 - 1765757 + g 88 -7.2 -4.88918 | ATGCAGGTTTTGAGG CCGC CGAA GCGG TTTTCTTTGCGGTCA TM1040_1664 1766120 - 1765815 - | hypothetical protein TM1040_1665 1766623 - 1766168 - | hypothetical protein TERM 1823 1766400 - 1766412 + g 74 -5.5 -4.4874 | ACATACATAGTCACC GCAGT GGT GCTGC TTTTGGCTTTTTGCA TM1040_1666 1766958 - 1766620 - | hypothetical protein TM1040_1667 1767530 - 1766958 - | phiE125 gp8 hypothetical protein TERM 1824 1767755 - 1767734 - R 76 -13.7 -2.87132 | opp_overlap 1767733 1767736, overlap 1767736 CTTTCGGCTCATAGA GAGGGCGAG CTTC CCCGCCCTC CTTGATCAGCCGACG TM1040_1668 1768983 - 1767772 - | phage major capsid protein, HK97 TERM 1825 1768227 - 1768264 + g 70 -3.3 -4.63218 | opp_overlap 1768260, overlap 1768228 TGGTGATCAGGCCGG ACAGGTTCTGGCCGGTG CCGT CACCGTTCAAAAGCTGG TTTTCTTCCGCCAGC TERM 1826 1768819 - 1768831 + g 71 -6.2 -4.42238 | GTTCATTTCGGTCAG GGCC TCGTC GGCC TTTTCCTTCAGGTCG TERM 1827 1768957 - 1768969 + g 76 -5.5 -4.63932 | GGCAGCGAGTTCCGC CACCG ACC TGGTG TTTTCTTCAGCCATG TM1040_1669 1769694 - 1769008 - | prohead peptidase TERM 1828 1769074 - 1769103 + g 76 -15.1 -2.52464 | gap 1 TTCCCCCGGCCCTTT CAGGTGGATGCGTG CGG CACGC-TCCGCCTG TGAGTTCGAAAGCCC TM1040_1670 1770901 - 1769678 - | Phage portal protein, HK97 TERM 1829 1770100 - 1770080 - G 70 -3.2 -4.59773 | opp_overlap 1770097, overlap 1770081 CGGCACGCCGAAAAA CCGGCAGA TTTCC TCCACCGA GAAGCGTCGGCTTTC TM1040_1671 1772683 - 1770902 - | phage terminase TM1040_1672 1773068 - 1772661 - | hypothetical protein TERM 1830 1773648 - 1773662 + G 70 -4.2 -4.46581 | overlap 1773623 1773619 TCCGGTATCCTGCCG GTGGGC GAT GTTCAC TTTTGTGCGGTTTTG TM1040_1673 1773573 - 1773896 + | hypothetical protein TM1040_1674 1774671 - 1774102 - | hypothetical protein TM1040_1675 1774942 - 1774694 - | hypothetical protein TM1040_1676 1775424 - 1774948 - | single-strand binding protein TM1040_1677 1776403 - 1775642 - | hypothetical protein TERM 1831 1776309 - 1776354 + g 100 -13.4 -4.15044 | overlap 1776299 1776308 GAATTTTGGCGCGAC GTCGCGACAGCGGTT-GCGCCA CGTT TGCCGCCAACCGC-GTCGAGAC TTTCTTCCGCCAGCG TM1040_1678 1777294 - 1776938 - | endodeoxyribonuclease RusA TM1040_1679 1777863 - 1777291 - | MT-A70 TERM 1832 1777690 - 1777674 - G 70 -4.3 -4.51196 | opp_overlap 1777644, overlap 1777675 CCCAAAGCCACAAAA CGCAGCT TTC AGCCGCT AGATGACCGACCTGC TM1040_1680 1778165 - 1777863 - | hypothetical protein TERM 1833 1778070 - 1778111 + g 82 -14.5 -3.22223 | gap 1, overlap 1778102 CGGACCGCCGTTGTG GCCGATGTGCGCGGCGATTG CTG CAATC-TTGCGCGCCTCGGC TTCCTGCTGCGCTTG TM1040_1681 1778846 - 1778403 - | hypothetical protein TERM 1834 1779188 - 1779200 + H 84 -3.3 -5.43866 | overlap 1779197 GATTGTCATCATGAG CCGGA TCA TGCGG TTTTTTTACCGCTTC TM1040_1682 1779272 - 1779922 + | hypothetical protein TERM 1835 1779974 - 1779960 - g 88 -6.4 -5.00884 | ATGGCCCCTAAAAAA TCACTC TTG GAGCGA ATGCGCGCGAACCCT TM1040_1683 1779945 - 1780214 + | hypothetical protein TM1040_1684 1780207 - 1780608 + | hypothetical protein TERM 1836 1780650 - 1780635 - f 77 -11.8 -3.30006 | opp_overlap 1780635, overlap 1780629 ATCAAGCGACAGGAA CCCCGC TCCG GCGGGG TTTTTCTTTGCGCGC TERM 1837 1780635 - 1780650 + F 100 -11.8 -5.27335 | opp_overlap 1780629 1780635 ATCAAGCGACAGGAA CCCCGC TCCG GCGGGG TTTTTCTTTGCGCGC TERM 1838 1780787 - 1780802 + F 75 -6.1 -4.66537 | opp_overlap 1780787, overlap 1780780 1780799 GGATGCGACACGAAA GCGGT AAATAA ACCGC TTTTATGTTGACGGC TM1040_1685 1780907 - 1781299 + | hypothetical protein TM1040_1686 1781513 - 1781776 + | hypothetical protein TM1040_1687 1781885 - 1782862 + | hypothetical protein TM1040_1688 1782883 - 1783587 + | hypothetical protein TM1040_1689 1783760 - 1784104 + | hypothetical protein TM1040_1690 1784101 - 1784478 + | HNH nuclease TERM 1839 1786113 - 1786089 - g 78 -7.1 -4.72272 | opp_overlap 1786089 CTGCGCGAGCAAAAA GGACCAGAACA GCC TGTTCTCGGCC TTTCTCGCCCAGCAA TM1040_1691 1784602 - 1786695 + | C-5 cytosine-specific DNA methylase TERM 1840 1787271 - 1787260 - g 88 -2.2 -5.56264 | overlap 1787267 GGCAAACACAAAAAA CAGA CAGC TCCG GCGAAGTACACGTGG TERM 1841 1788090 - 1788064 - g 73 -10.8 -3.57144 | CGGGCCAGCCGCAAA GCGCTCTCACGC GCC GCTCAAGAGCGC CGAAAGTGAAATTCC TM1040_1692 1787053 - 1788099 + | phage integrase TM1040_1693 1789004 - 1788393 - | tetratricopeptide TPR_2 TM1040_1694 1789490 - 1789014 - | AsnC family transcriptional regulator TERM 1842 1792224 - 1792187 - g 82 -12 -3.90112 | opp_overlap 1792186 1792191, overlap 1792191 GCGTCCTGAAGGAAA TGCAGGCGCCACAGAG CGGCAC CTTTGTGGCGCCGACA ATGATTTCGATCAAC TERM 1843 1792220 - 1792191 - g 73 -13.6 -2.70979 | opp_overlap 1792191 1792186, overlap 1792187 CCTGAAGGAAATGCA GGCGCCACAGAG CGGCAC CTTTGTGGCGCC GACAATGATTTCGAT TM1040_1695 1789603 - 1793010 + | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 1844 1793056 - 1793019 - f 86 -14.8 -3.32844 | opp_overlap 1793023 1793041, overlap 1793020 1793022 CGCCTGATCTGACAA CGATGCGCTGCCCGGC CTCTGC GCCGGGCAGCACTTCT GCCCAAGCCTTTCAT TERM 1845 1793055 - 1793020 - f 86 -18.3 -2.59564 | opp_overlap 1793023 1793041, overlap 1793019 1793022 GCCTGATCTGACAAC GATGCGCTGCCCGGC CTCTGC GCCGGGCAGCACTTC TGCCCAAGCCTTTCA TERM 1846 1793053 - 1793022 - f 81 -15.1 -2.83822 | opp_overlap 1793023 1793041, overlap 1793020 1793019 CTGATCTGACAACGA TGCGCTGCCCGGC CTCTGC GCCGGGCAGCACT TCTGCCCAAGCCTTT TERM 1847 1793023 - 1793052 + F 90 -16.4 -3.29043 | opp_overlap 1793022 1793020 1793019, overlap 1793041 TGATCTGACAACGAT GCGCTGCCCGGC CTCTGC GCCGGGCAGCAC TTCTGCCCAAGCCTT TM1040_1696 1793112 - 1793882 + | rhomboid-like protein TM1040_1697 1793908 - 1794294 + | glutathione-dependent formaldehyde-activating, GFA TERM 1848 1794420 - 1794390 - T 100 -16.9 -5.45802 | gap 1 GGTCCAAAACAAAAA CACCCCGGCGCGCC CATC GGCG-ACCGGGGTG TGAGGCTTTCACTGC TM1040_1698 1795251 - 1794466 - | inositol monophosphatase TM1040_1699 1796337 - 1795432 - | LysR family transcriptional regulator TERM 1849 1796579 - 1796598 + G 76 -5.6 -4.64844 | gap 1, overlap 1796579 1796580 GACACGGTGCAGTCA C-TGGCGCC GCT GGCGCCCCG TTTTGTCTCTGTGAC TM1040_1700 1796495 - 1797364 + | 5,10-methylenetetrahydrofolate reductase TM1040_1701 1797423 - 1797905 + | phenylacetic acid degradation-related protein TM1040_1702 1798926 - 1797922 - | hypothetical protein TERM 1850 1799102 - 1799124 + G 75 -2.7 -5.0133 | gap 2 TGCGCTACCCGCTGG GGCC--CGCTT CCA AGGCGATGGCC TTTTTTGAACGCGTG TM1040_1703 1798978 - 1799601 + | GCN5-related N-acetyltransferase TM1040_1704 1800708 - 1799623 - | hypothetical protein TERM 1851 1800350 - 1800329 - G 74 -12.9 -3.17194 | ATGCCGGCAAGGGAA CGCGCCGCG TAGG CGCCGCGCG AGTAGCCCAGAAGAT TM1040_1705 1802995 - 1800686 - | xanthine dehydrogenase, molybdenum binding subunit apoprotein TERM 1852 1801361 - 1801379 + g 75 -13.2 -2.94099 | CATCTTGTCGACGGT GGCCAATG TGG CATTGGCC TGTGTGGTCACGGAA TERM 1853 1803159 - 1803216 + H 100 -24.1 -4.07568 | gap 1, opp_overlap 1803144 1803143 TGCGCTGCGCGAGGC GCATCGCGGTGGCGCAGGCGCCGTGCCC CCT GGGCACGGCGCCTGCTCGGCC-CAACGC TTTTGGGAGCCCGAC TERM 1854 1803241 - 1803268 + H 84 -13.5 -3.66178 | opp_overlap 1803246 1803247, overlap 1803247 CCCGACAGGGCACCC GCAAAGGGGCG GGAGCG CGCCCTTTTGC TTTGACCTTCAAAGC TERM 1855 1803247 - 1803262 + H 79 -7.5 -4.564 | opp_overlap 1803246 1803247, overlap 1803241 AGGGCACCCGCAAAG GGGCG GGAGCG CGCCC TTTTGCTTTGACCTT TERM 1856 1804954 - 1804932 - g 84 -10.6 -4.18018 | GGCGTTCACTGAAAA CGAGGTAGAT GCA ATCAACCTCG TGCCCGATCATCTGC TERM 1857 1805426 - 1805401 - g 75 -2.6 -4.96501 | gap 1, overlap 1805402 1805403 TTTGACAAAAACAAA GTCGCCACAAA GGCAT TTTGTGGTG-C ATCCAAAGAAGAGAT valS 1803784 - 1806879 + | valyl-tRNA synthetase TERM 1858 1806923 - 1806901 - f 74 -10.4 -3.59738 | opp_overlap 1806901 GATCACACTCTGAAA CGCCCGGGCC CTT GGTTCGGGCG TTTTTGTCTGCACTG TERM 1859 1806901 - 1806923 + F 100 -14.8 -4.9792 | opp_overlap 1806901 GATCACACTCTGAAA CGCCCGGGCC CTT GGTTCGGGCG TTTTTGTCTGCACTG TERM 1860 1807068 - 1807054 - f 75 -12.8 -2.94726 | GTGCAGAACACGAGA GGCCGG TCA CCGGCC CGGACTACATGGGGA TM1040_1707 1807090 - 1807383 + | hypothetical protein TERM 1861 1807833 - 1807814 - g 87 -10.6 -4.33417 | overlap 1807816 GTGATCGACAACAAA CGGGCGCG TGAT CGTGCCCG CGCCAAGCTGGCCAC TM1040_1708 1807406 - 1807864 + | hypothetical protein TM1040_1709 1807873 - 1808316 + | hypothetical protein TM1040_1710 1808313 - 1809083 + | hypothetical protein TERM 1862 1809104 - 1809139 + F 77 -9.7 -3.91072 | gap 2, opp_overlap 1809089 1809086, overlap 1809090 1809089 CGCGCGCCACTGCCT GCGC-A-GCGCGCGCCG CATT TGGCGCGCACATTGCGC TTTCTGGCAGTTTCC TM1040_1711 1809264 - 1810043 + | ABC transporter related TM1040_1712 1810083 - 1810790 + | extracellular solute-binding protein TERM 1863 1810814 - 1810843 + F 71 -7.7 -4.07568 | opp_overlap 1810813 1810815 1810816, overlap 1810821 ATCCCTGACTGAAAC ACGGGAGGGGGGC ATCG GCCCCCTTTCCAC TTTTGCCACCGCGCA TERM 1864 1810821 - 1810836 + F 83 -11.8 -3.76413 | opp_overlap 1810816 1810815 1810813, overlap 1810814 ACTGAAACACGGGAG GGGGGC ATCG GCCCCC TTTCCACTTTTGCCA TERM 1865 1811021 - 1811045 + G 79 -9.2 -4.27211 | overlap 1811031 TCTGTTGCTGCTGGC GGTCACCGCC CCGAT GGCGCTGGCC TTTGGTTTCTTTGGC TERM 1866 1811031 - 1811050 + G 71 -5.6 -4.41348 | overlap 1811021 CTGGCGGTCACCGCC CCGATGGC GCTG GCCTTTGG TTTCTTTGGCGCCAG TM1040_1713 1810884 - 1811792 + | binding-protein-dependent transport systems inner membrane component TM1040_1714 1811789 - 1812595 + | amino acid ABC transporter permease TERM 1867 1812616 - 1812652 + T 100 -22.5 -3.29043 | opp_overlap 1812621, overlap 1812621 CGACACCCGCAAAGA AAAAACGCCCCGCTGAT CAG ATCAGCGGGGCGTTTTC TTATCCACGCGCCTT TERM 1868 1812647 - 1812621 - T 100 -22.4 -5.63517 | opp_overlap 1812621 1812616 CCCGCAAAGAAAAAA CGCCCCGCTGAT CAG ATCAGCGGGGCG TTTTCTTATCCACGC TERM 1869 1812621 - 1812647 + T 100 -22.4 -4.77165 | opp_overlap 1812621, overlap 1812616 CCCGCAAAGAAAAAA CGCCCCGCTGAT CAG ATCAGCGGGGCG TTTTCTTATCCACGC TM1040_1715 1814482 - 1812653 - | Poly(R)-hydroxyalkanoic acid synthase, class I TM1040_1716 1814631 - 1815902 + | polyhydroxyalkanoate depolymerase, intracellular TERM 1870 1816014 - 1816046 + G 70 -12.8 -2.95774 | gap 1 AAGGCACCCGCCTAC GCTGCCACTGCACCG ATTG CCGTGCAGTGG-AGC TCTATCATGGGTCTC TM1040_1717 1815914 - 1816507 + | hypothetical protein TM1040_1718 1817314 - 1816511 - | alpha/beta fold family hydrolase/acetyltransferase TM1040_1719 1817951 - 1817526 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 1871 1817659 - 1817643 - G 76 -9.3 -4.07568 | overlap 1817645 GGTCCCGCCCCAAAA GACCGGC CCA GCCGGGC GCAAGATGGCAGCGC TERM 1872 1817657 - 1817645 - G 73 -10.5 -3.63744 | overlap 1817643 TCCCGCCCCAAAAGA CCGGC CCA GCCGG GCGCAAGATGGCAGC TERM 1873 1818000 - 1817974 - R 100 -10.8 -4.85782 | opp_overlap 1817974 1817975, overlap 1817975 TCCTTTAAAAACAAA CGACGCGCCAAA ACC CTTGGCGCGCCC TTTCCTTACATCAAG TERM 1874 1817999 - 1817975 - R 85 -14.3 -3.50746 | opp_overlap 1817974 1817975, overlap 1817974 CCTTTAAAAACAAAC GACGCGCCAAA ACC CTTGGCGCGCC CTTTCCTTACATCAA TERM 1875 1817975 - 1817999 + r 70 -11.4 -2.95652 | opp_overlap 1817975 1817974, overlap 1817974 CCTTTAAAAACAAAC GACGCGCCAA AACCC TTGGCGCGCC CTTTCCTTACATCAA TM1040_1720 1818787 - 1818044 - | hypothetical protein TERM 1876 1818902 - 1818912 + H 73 -8.2 -4.06055 | opp_overlap 1818873 1818872, overlap 1818873 GGGGCAGCGCCCCTC GCCC AGG GGGC TTTAATTTCAAACCT TERM 1877 1820533 - 1820545 + G 73 -9.1 -3.91897 | CAACCTGCCCGAACG GCTCG AAG CGAGC TTTATCGGTCAGGAC TM1040_1721 1819028 - 1820974 + | Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase TERM 1878 1821021 - 1820998 - f 75 -9.4 -4.15044 | opp_overlap 1821000, overlap 1820999 CGGTTTTTGAACAAA GGCGGCCCCC ACTC GGGGGCCGTT TTGTTTCAAAACCCC TERM 1879 1821020 - 1820999 - f 75 -12.9 -3.08812 | opp_overlap 1821000, overlap 1820998 GGTTTTTGAACAAAG GCGGCCCCC ACTC GGGGGCCGT TTTGTTTCAAAACCC TERM 1880 1821000 - 1821019 + F 100 -16.4 -4.86731 | opp_overlap 1820999 1820998 GTTTTTGAACAAAGG CGGCCCCC ACTC GGGGGCCG TTTTGTTTCAAAACC TM1040_1722 1821195 - 1821500 + | hypothetical protein TERM 1881 1821524 - 1821549 + F 90 -18.3 -3.04144 | opp_overlap 1821518 1821516, overlap 1821529 CATCACAGACTCCTT GGCAGGGGCGC TGCG GCGCCCTTGCC TGTTGCCGATGCGCC TERM 1882 1821529 - 1821544 + F 74 -11.8 -3.18728 | opp_overlap 1821518 1821516, overlap 1821524 CAGACTCCTTGGCAG GGGCGC TGCG GCGCCC TTGCCTGTTGCCGAT TM1040_1723 1821631 - 1822482 + | hypothetical protein TERM 1883 1823173 - 1823187 + G 71 -7.1 -4.25283 | CCGAATTTGACCTCA GCGTC CCCCT GACGC TTTTGATCGAGGGCT TM1040_1724 1822482 - 1823228 + | hypothetical protein TM1040_1725 1823237 - 1823800 + | DoxX TERM 1884 1823827 - 1823857 + T 90 -16.2 -3.49886 | overlap 1823825 AATCCCTTCAGATCT GCGGCGCCTGTG ATTGACC CATAGGCGCCGC TTCGTTGTCTCAGGT TM1040_1726 1824197 - 1823880 - | arsenate reductase and related TM1040_1727 1824418 - 1824624 + | cold-shock DNA-binding protein family protein TERM 1885 1824645 - 1824685 + T 77 -11.1 -3.65529 | overlap 1824648 CTTTCCCAAAAAACT CCACTGCGTCCAGGCCATG TTG TGTGGTTTGGGCGCGGTCG TTTCCATGCACCTCT TERM 1886 1824648 - 1824682 + T 70 -11.4 -2.94144 | overlap 1824645 TCCCAAAAAACTCCA CTGCGTCCAGGCCATG TTG TGTGGTTTGGGCGCGG TCGTTTCCATGCACC TM1040_1728 1825200 - 1824709 - | dihydrofolate reductase TM1040_1729 1826061 - 1825228 - | thymidylate synthase TERM 1887 1825905 - 1825915 + g 72 -2.4 -4.77036 | CATGTATGATCGAGC GCAG ATG CAGC TTTTTGGTCGTCACC TERM 1888 1826306 - 1826287 - g 71 -5.6 -4.41348 | TCGGCCTCAAAGAAA CCCGCCGC TACG ACAGCGAG GCAGGACGGTTTTCG TM1040_1730 1826199 - 1826627 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 1889 1826636 - 1826678 + T 70 -11.8 -2.59564 | overlap 1826635 CTGGTGATCCGATGC GCGCCGTGTGTGAGGGGGCA CGC TGCCGCGTCCCCCGTGGCGC CTTCTAACGTGGCCC TERM 1890 1826736 - 1826724 - T 71 -9.1 -3.71649 | GGTCTAAACTGGAAA GTCGC TGG GCGAC TGAACTTAAAAAAAA TERM 1891 1826786 - 1826752 - T 100 -15.1 -5.86332 | gap 1, opp_overlap 1826753, overlap 1826753 TGAACTTAAAAAAAA GCAGCCCGGATCTGGA AGGC TCCAG-TCCGGGCTGT TTGGCAGCAAACGCT TERM 1892 1826753 - 1826785 + T 100 -18.6 -3.53012 | gap 1, opp_overlap 1826752 1826753 GAACTTAAAAAAAAG CAGCCCGGATCTGGA AGGC TCCAG-TCCGGGCTG TTTGGCAGCAAACGC TERM 1893 1826785 - 1826753 - T 100 -18.6 -4.10173 | gap 1, opp_overlap 1826753, overlap 1826752 GAACTTAAAAAAAAG CAGCCCGGATCTGGA AGGC TCCAG-TCCGGGCTG TTTGGCAGCAAACGC TERM 1894 1826850 - 1826869 + T 70 -10.7 -3.24245 | opp_overlap 1826849 1826848 CTCACCCATCAAACT GCGCCCA TATCAC TGGGCGC TTGCGTTCTCGGTAA TM1040_1731 1827694 - 1827197 - | MarR family transcriptional regulator TM1040_1732 1828052 - 1827774 - | hypothetical protein TM1040_1733 1828450 - 1828049 - | XRE family transcriptional regulator TERM 1895 1829489 - 1829502 + G 85 -5.9 -5.03994 | overlap 1829484 GGCTTGACCTGCCCG GTGCC GGAG GGCGC TTTTTATGTCTACCC TM1040_1734 1828535 - 1829737 + | aspartate aminotransferase TM1040_1735 1830011 - 1830427 + | hypothetical protein TM1040_1736 1831915 - 1830497 - | MATE efflux family protein TERM 1896 1830608 - 1830598 - G 72 -2.4 -4.78753 | GCAACAGCAACAAAA CGCC GGC GGTG CTAAGACCGAGGATC TERM 1897 1830932 - 1830905 - G 72 -2.6 -4.7254 | overlap 1830910 AGGCGCGAGGAAAAA CACCATCGCAGT CGCC ACCGCGATCCCG AGCGAGGCCAGGGTC TERM 1898 1831769 - 1831733 - G 71 -7.4 -4.18421 | gap 2, overlap 1831736 GAACCACACAAAGAA GAACGACCCGGC--CAGT GTC ACTGCAGCCAGCTCGTTC ACCCCGTACCAGCCC TM1040_1737 1833159 - 1832077 - | high-affinity nickel-transporter TERM 1899 1832718 - 1832706 - G 71 -6.9 -4.18161 | overlap 1832697 GATAAAGGCCCAAAA GCGCC ATC AGCGC ATAAGACACCGGTGC TM1040_1738 1833802 - 1833164 - | hypothetical protein TERM 1900 1833427 - 1833406 - G 84 -10.9 -4.09685 | gap 1 CCCCATTGGCCAAAA CCGG-GACAG GTT CTGTCACCGG GCGCCGATGCCGGGT TERM 1901 1833755 - 1833736 - G 81 -4.2 -4.87665 | overlap 1833738 CGCTATCGACAAAAA TATGCGGG TGCG CCAGCACA GGAAGCGGCGCAGCA TERM 1902 1833864 - 1833849 - R 71 -11.8 -2.74322 | overlap 1833848 TTCAAGGGCGGAAAC CCCGGC CCCC GCCGGG TGTGCCGGAATTCGC TM1040_1739 1834507 - 1833899 - | hypothetical protein TERM 1903 1835246 - 1835216 - g 75 -2.3 -5.00616 | opp_overlap 1835239, overlap 1835217 1835218 GCGGTGTGGAAAAAA TCGGCGCTGCCCC CAATC GGCGCGGCACCAC GGTGACATTTCACGC TM1040_1740 1834669 - 1836678 + | DNA topoisomerase IV subunit B TM1040_1741 1837215 - 1836784 - | cytochrome c, class I TERM 1904 1837316 - 1837283 - R 78 -12.4 -3.53444 | opp_overlap 1837281 1837306 GCATCGGCGGGTAAA CATGGCCCGGAGGA TGCGGT CCCTCCCGGCCACG CGAATTTTCTGTTTT TM1040_1742 1838223 - 1837357 - | copper resistance D TERM 1905 1837462 - 1837417 - G 70 -3.8 -4.60487 | gap 1, overlap 1837451 GAGCACTGCCAAAAA GGCAGCGCCCTCAACCCGCAA GGATA TGGCAAGATG-GCGCGCAGCC GCACTGTCGCCTGCC TM1040_1743 1838576 - 1838226 - | copper resistance protein CopC TM1040_1744 1839010 - 1838579 - | cytochrome c, class I TERM 1906 1838793 - 1838767 - G 90 -15 -3.62224 | AGATTTTGTGAATAA GCGGCGGCCCCG CTT CGGGGTTGCCGC CGCCCTGAGCACCAT TERM 1907 1838968 - 1838958 - G 85 -2.4 -5.42605 | overlap 1838962 CGAAGAAAAACAAAA GCAG CAG CAGC CAGTGCGACGCTGGC TM1040_1745 1839442 - 1839068 - | hypothetical protein TERM 1908 1839479 - 1839504 + r 74 -7.6 -4.30576 | opp_overlap 1839478 1839479 GCGCGTTGAAACAAC TGTCATGCCG TGGCGC CCGCATGACA TTTTCGTGCTGAACA TM1040_1746 1840134 - 1839580 - | hypothetical protein TERM 1909 1839856 - 1839844 - G 74 -5.5 -4.52857 | overlap 1839846 1839847 ACGCGGGAGATAAAA CACTG TCC CAGCG GGAAAATCGAGAATG TERM 1910 1840307 - 1840321 + H 76 -3.5 -4.86033 | gap 1, overlap 1840307 1840308 ATGCAACCTTTTGCA G-CGCG CCCG CGCGTC TTTTTCTGCAGGTTT TERM 1911 1840308 - 1840319 + H 71 -7.2 -4.04397 | overlap 1840307 1840307 TGCAACCTTTTGCAG CGCG CCCG CGCG TCTTTTTCTGCAGGT TERM 1912 1840832 - 1840815 - g 93 -7.7 -5.07567 | gap 1, overlap 1840818 GGAGACCGCAAAAAA GAC-CGGG TTT CCCGTGTC CCAGATCATGTTTGA TM1040_1747 1840384 - 1841259 + | diguanylate phosphodiesterase TM1040_1748 1842276 - 1841365 - | LysR family transcriptional regulator TERM 1913 1842666 - 1842646 - g 88 -13.3 -3.5764 | AACGTGACGTTCAAA GTGGCCGAG ACG CTCGACCAC AACCCTCAGGACGGC TM1040_1749 1842361 - 1843008 + | methyltransferase type 12 TERM 1914 1843106 - 1843072 - T 70 -11.3 -2.98823 | TTGCTGCGATATAGA GGCGGGCGGTGCCCC TATCC GAGGCACCGCCCAAT GGACTTACAATAGCG TM1040_1750 1843791 - 1843111 - | ThiJ/PfpI TERM 1915 1844123 - 1844108 - g 78 -4.6 -4.75174 | overlap 1844118 GAGCCAACTGAAAAA GCGCTA CAGA TCGCGC CCGACATCGCCGCCG TM1040_1751 1843922 - 1844821 + | LysR family transcriptional regulator TM1040_1752 1845256 - 1845462 + | cold-shock DNA-binding protein family protein TM1040_1753 1845455 - 1845703 + | hypothetical protein TM1040_1754 1846069 - 1846413 + | hypothetical protein TERM 1916 1846809 - 1846837 + T 70 -5.1 -4.4017 | overlap 1846812 ACCTCGATGTGGCGG GTGGTGTCCGGCC ACT GGGCGTGCACTGC TTTTATGAAGGTTGC TM1040_1755 1847441 - 1846962 - | AsnC family transcriptional regulator TM1040_1756 1847652 - 1848404 + | uroporphyrinogen-III C-methyltransferase TM1040_1757 1848404 - 1848724 + | hypothetical protein TM1040_1758 1848717 - 1850384 + | nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like TERM 1917 1851135 - 1851095 - g 82 -11.9 -3.8917 | opp_overlap 1851102, overlap 1851062 1851102 GCGCAACCAGAACAA GGAAGAATGCGGCATCCAC GTT GTGGATGGCAAATTCGTCC GTACAGGAGCTTGAG TM1040_1759 1850388 - 1851149 + | phosphoadenosine phosphosulfate reductase TM1040_1760 1851155 - 1851559 + | hypothetical protein TM1040_1761 1851726 - 1852598 + | ferredoxin--NADP(+) reductase TERM 1918 1852604 - 1852584 - T 79 -7.6 -4.56597 | gap 1, opp_overlap 1852584 1852586 TTTGTGGTGGAAAAA GCCTTCCTC GACT GAGGA-GGC TTTGACAGCGTCTTA TERM 1919 1852652 - 1852626 - T 100 -16.6 -3.79113 | opp_overlap 1852626 AGCGTCTTACAAGAA CGCCCCCGCA CGCATGC TGCGGGGGCG TTTTCTATTTAGAAC TERM 1920 1852626 - 1852652 + T 100 -16.6 -4.78848 | opp_overlap 1852626 AGCGTCTTACAAGAA CGCCCCCGCA CGCATGC TGCGGGGGCG TTTTCTATTTAGAAC TERM 1921 1852698 - 1852716 + T 81 -13.1 -3.59247 | opp_overlap 1852698, overlap 1852715 CAGCTCAATAGAAAA CGCCCCG AGGAA CGGGGCG TTTGGGACGTTGTTC TERM 1922 1852716 - 1852698 - T 95 -13.1 -4.67608 | opp_overlap 1852698 1852715 CAGCTCAATAGAAAA CGCCCCG AGGAA CGGGGCG TTTGGGACGTTGTTC TM1040_1762 1853548 - 1852751 - | mucin-associated surface protein TERM 1923 1852830 - 1852844 + g 70 -4.2 -4.57569 | GCCTGCGTGATCGCG GACTTC AGC GCAGTC TTTTTCAGCGGGTCC TERM 1924 1854059 - 1854043 - g 75 -2.2 -4.89233 | TATGAACAGCAAAAA CGCG AGAGCGAAG CGCG CAAGAAGCAGAAGAT TM1040_1763 1853932 - 1854345 + | translation initiation factor 3 TERM 1925 1854429 - 1854405 - T 100 -15.8 -5.71712 | opp_overlap 1854405 TTGCACATAAAAAAA GCCTCCCTTG ATACG CAAGGGAGGC TTTTTAGCTTTCAAT TERM 1926 1854405 - 1854429 + T 100 -15.8 -4.81851 | opp_overlap 1854405 TTGCACATAAAAAAA GCCTCCCTTG ATACG CAAGGGAGGC TTTTTAGCTTTCAAT TM1040_1764 1855252 - 1854464 - | molybdopterin dehydrogenase, FAD-binding TM1040_1765 1857721 - 1855343 - | xanthine dehydrogenase, molybdenum binding subunit apoprotein TERM 1927 1855603 - 1855547 - G 71 -5.7 -4.40358 | gap 1, overlap 1855557 ATCCACCTGATAAAA CGGCACATCATCCGCGCGCGGCATGG CGTAAT CCATGAAGCTCGCGGACAA-GAGCTG ACCATCCTCGTCATA TM1040_1766 1858361 - 1857876 - | (2Fe-2S)-binding TM1040_1767 1859479 - 1858406 - | molybdopterin binding domain-containing protein TM1040_1768 1860504 - 1859476 - | hypothetical protein TM1040_1769 1861903 - 1860620 - | VWA containing CoxE-like TERM 1928 1861292 - 1861344 + g 71 -8.4 -4.07568 | overlap 1861295 GCCCGCACCACGCAT CGTG-CGCCGCCAATCCGGCCTTGCA CCT TGCGGCG-CGGGTTGATGGCGGCGCG TTTTCAGAGGCGCAA TERM 1929 1861750 - 1861740 - G 85 -6.8 -4.73388 | overlap 1861741 AAGGTCCAGTAAAAA TCGC GCC GCGA CGTGAAACCGGCGGC TM1040_1770 1862881 - 1861967 - | ATPase TERM 1930 1862202 - 1862250 + g 73 -10.3 -3.66356 | gap 2, overlap 1862203 TGAACGAAGGCGACC ACCTGACGGCTGAGG-GCC-TCG CTTGC CGTTGGCACCTGAGCCGTCAGGA TTTCCAGTTCACGGT TERM 1931 1862203 - 1862249 + g 73 -13.8 -2.79492 | gap 2, overlap 1862202 GAACGAAGGCGACCA CCTGACGGCTGAGG-GCC-TCG CTTGC CGTTGGCACCTGAGCCGTCAGG ATTTCCAGTTCACGG TERM 1932 1863063 - 1863049 - H 80 -11.4 -3.78775 | CGCCGGATGACCAAA GCCCCA GCT TGGGGC AGGATCGGCCAAAGA TERM 1933 1864138 - 1864110 - g 73 -4.6 -4.59773 | gap 1 GCCCAGCTGCAAAAA GCCTCTCCGCTGC CGCC GCAA-GAAGAAGC GATGTTGATGCGGCT TM1040_1771 1863225 - 1864166 + | hypothetical protein TERM 1934 1864392 - 1864407 + G 76 -9 -4.03234 | CAACACGCATGATGC GCTCAC CGAG GTGAGC TTTATCTACGGGGGC TM1040_1772 1864177 - 1864836 + | hypothetical protein TERM 1935 1865060 - 1865049 - g 76 -5.8 -4.58663 | ATCAGTCCGGAAAAA CAGG CGGA CCTG CGCGCAAACCTGCAG TM1040_1773 1864836 - 1867199 + | hypothetical protein TM1040_1774 1867202 - 1868335 + | glycosyl transferase, group 2 family protein TERM 1936 1868592 - 1868577 - g 76 -5.4 -4.63932 | gap 1, opp_overlap 1868591 GATGGCCGAAGAAAA CGGCATG TAC CA-GCCG CTTGGAGAGCGTCAT TM1040_1775 1868485 - 1869480 + | hypothetical protein TERM 1937 1869917 - 1869902 - g 71 -6 -4.36914 | overlap 1869903 CCGTGCTTGAGAAAA TGGCCG AAAT CGGCCT GCCGCTCTGCACCCA TM1040_1776 1869523 - 1870563 + | dihydroorotase pyrE 1870640 - 1871320 + | orotate phosphoribosyltransferase TERM 1938 1871354 - 1871390 + F 86 -16.5 -2.87931 | opp_overlap 1871361, overlap 1871361 GGCATCTGTCATCTG TGGATAAGGCCGCGCCG AAT CGGAGCGGCCTTTCCCA TATCTCGCGGCTGAC TERM 1939 1871383 - 1871361 - f 87 -16.2 -3.29511 | opp_overlap 1871354 1871361 GTCATCTGTGGATAA GGCCGCGCCG AAT CGGAGCGGCC TTTCCCATATCTCGC TERM 1940 1871361 - 1871383 + F 91 -16.2 -3.65425 | opp_overlap 1871361, overlap 1871354 GTCATCTGTGGATAA GGCCGCGCCG AAT CGGAGCGGCC TTTCCCATATCTCGC TM1040_1778 1871573 - 1873090 + | replicative DNA helicase TERM 1941 1873123 - 1873101 - f 74 -6.9 -4.43189 | gap 1, opp_overlap 1873097 1873102, overlap 1873102 ATTAAGGTCACAAAA GGGGCGCCGG GCCA CCGGT-CCCC TTCATCTTTTCCTCA TM1040_1779 1873275 - 1874312 + | alanine racemase TERM 1942 1875055 - 1875076 + G 75 -2.9 -4.89852 | overlap 1875058 GCTGATCCTTGCAGC CAACTTCGT GCTC ACGGGGGTG TTTTTCTCGCTATGA TM1040_1780 1874309 - 1875091 + | hypothetical protein TM1040_1781 1875088 - 1875846 + | ABC transporter related TM1040_1782 1875910 - 1876587 + | hypothetical protein TM1040_1783 1876584 - 1877072 + | paraquat-inducible protein A TERM 1943 1877087 - 1877073 - f 73 -12.8 -2.70932 | opp_overlap 1877080, overlap 1877049 GGGGCGGGTCAATGA CGGCCC ATC GGGCCG CCGCGCCCCGCGCGG TERM 1944 1877149 - 1877180 + F 70 -10.3 -3.29511 | opp_overlap 1877149 1877148, overlap 1877173 TTCAGGCTGGACAAG GCGCGTTCA-GGGCA GACC TGCCCCTGAAC-CGC TTCTCAGCAGATCAC TERM 1945 1877304 - 1877292 - f 93 -10.5 -4.57837 | ATATGCGGGGAAAAA GGGGC GCT GCCCC CGGCCCTCTGGGCCT TM1040_1784 1877394 - 1878758 + | DNA repair protein RadA TM1040_1785 1878733 - 1879356 + | colicin V production protein TERM 1946 1879382 - 1879402 + F 91 -11.8 -4.4261 | CTACCGAGATTGAGA GGGCGTCC AATTC GGGCGCCC TTTTCATATTCGCGA TM1040_1786 1879765 - 1880475 + | hypothetical protein TERM 1947 1881181 - 1881200 + G 90 -6.3 -5.24129 | overlap 1881171 CCGCAGGTTCGCTCT CGGCCGC CGAGGC GCAGCCG TTTTTTGTGAACGCA TERM 1948 1882434 - 1882402 - g 85 -9.1 -4.71426 | GCGTGACCAAGAAAA TCAAGGACATGCCTG ATG CAGGCGCATCCTGGA ACGGCGCAACGCTGG TM1040_1787 1880937 - 1882457 + | amidophosphoribosyltransferase TERM 1949 1882573 - 1882600 + F 80 -11.3 -3.77906 | GCCAACACATCTTGA TGGCGCTGATC CCAACA GGTCGGCGCCA TTGTCTATTTGACTT TM1040_1788 1882654 - 1883196 + | hypothetical protein TM1040_1789 1883451 - 1883705 + | hypothetical protein TERM 1950 1884375 - 1884409 + G 72 -14.2 -2.61582 | overlap 1884374 CCGGCGAGGATCGCA CGCCTCTGACGCCTCC GGC GGAGGCTGCAAAGGCG CTTCTGACTGACATC TM1040_1790 1883789 - 1884436 + | short-chain dehydrogenase/reductase SDR TERM 1951 1884479 - 1884501 + F 75 -12.6 -3.03243 | opp_overlap 1884474 1884473 1884471, overlap 1884481 CACCAAATATCCCGG GGTCCGGGGC AGC GCCCCGGCTC TGTTCCCGCCTGCCT TERM 1952 1884481 - 1884499 + F 71 -11.6 -3.07344 | opp_overlap 1884474 1884473 1884471, overlap 1884479 CCAAATATCCCGGGG TCCGGGGC AGC GCCCCGGC TCTGTTCCCGCCTGC TM1040_1791 1884712 - 1885494 + | 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase TERM 1953 1886087 - 1886099 + G 71 -6.2 -4.30177 | opp_overlap 1886086 GGAATATGACGAATT GCGC CCCGT GCGC TTTGTTCCTCTGCTG TM1040_1792 1885491 - 1886138 + | protein-L-isoaspartate O-methyltransferase TM1040_1793 1886267 - 1887547 + | peptidase M23B TM1040_1794 1888561 - 1887686 - | hypothetical protein TERM 1954 1887778 - 1887728 - G 77 -12 -3.6106 | gap 3, opp_overlap 1887732, overlap 1887731 1887732 CGCAAGATCGGTAAA GAACTGCCAGGCCA--CGCGGCCCG AGCG CGCGCCGCGCGTGGCCTGCCA-TTC GATCGCTTCGGCACG TERM 1955 1887776 - 1887731 - G 78 -10.4 -3.93658 | gap 2, opp_overlap 1887732, overlap 1887728 1887732 AAGATCGGTAAAGAA CTGCCAGGCCA--CGCGGCCCG AGCG CGCGCCGCGCGTGGCCTGCCAT TCGATCGCTTCGGCA TERM 1956 1887775 - 1887732 - G 75 -13.9 -2.95472 | gap 2, opp_overlap 1887732, overlap 1887731 1887728 AGATCGGTAAAGAAC TGCCAGGCCA--CGCGGCCCG AGCG CGCGCCGCGCGTGGCCTGCCA TTCGATCGCTTCGGC TERM 1957 1887732 - 1887775 + g 76 -13.9 -3.09933 | gap 2, opp_overlap 1887732 1887731 1887728 AGATCGGTAAAGAAC TGCCAGGCCA--CGCGGCCCG AGCG CGCGCCGCGCGTGGCCTGCCA TTCGATCGCTTCGGC TERM 1958 1888663 - 1888686 + r 100 -17.4 -4.60924 | opp_overlap 1888663 ACAACAAAAGAAAAA GGCGCGCTCC AAAG GGGGCGCGCC TTTTTCAAAGGTTTC TERM 1959 1888686 - 1888663 - R 100 -15.2 -5.64321 | opp_overlap 1888663 ACAACAAAAGAAAAA GGCGCGCTCC AAAG GGGGCGCGCC TTTTTCAAAGGTTTC TM1040_1795 1889606 - 1888716 - | Sec-independent protein translocase TatC TERM 1960 1888763 - 1888773 + g 91 -8.2 -4.82901 | overlap 1888750 1888754 CTTCGGCGCGCAGCT GCGC CTC GCGC TTTTTCTCGACGCGC TM1040_1796 1890091 - 1889603 - | twin-arginine translocation protein TatB TERM 1961 1889860 - 1889889 + g 84 -9.9 -4.14874 | CCTGTTTGACGCTAT CCATGGCCGACCC CATC GGGTTGGTCGCGG TTTTAAACGTCTTCT TM1040_1797 1890314 - 1890099 - | sec-independent translocation protein mttA/Hcf106 TM1040_1798 1890558 - 1890881 + | hypothetical protein TERM 1962 1890881 - 1890933 + F 76 -5.3 -4.6902 | overlap 1890882 1890883 CTCCGCGATGGGTTG ACCTGATGGTGCGGCGCAGGTGA AAGATCA TCCCATGCGCCGCACCGACCGCC TTTTTGAAATTATCC TERM 1963 1890883 - 1890931 + F 70 -12.3 -2.6369 | overlap 1890882 1890881 CCGCGATGGGTTGAC CTGATGGTGCGGCGCAGGTGA AAGATCA TCCCATGCGCCGCACCGACCG CCTTTTTGAAATTAT TERM 1964 1891403 - 1891419 + G 72 -11.5 -3.27766 | CCAGACCCTGACCGA GCGGGTG ATC CGCCCGC TTCATATGGAATATT TERM 1965 1891515 - 1891533 + G 81 -4.4 -4.87665 | GATCTCATTGAGACG GCCGAGGC CTT GCCTGAGC TTTTTGTAGATGAAC TM1040_1799 1890915 - 1891604 + | helix-turn-helix, type 11 TM1040_1800 1892491 - 1891610 - | GCN5-related N-acetyltransferase TM1040_1801 1893631 - 1892504 - | ABC transporter related TERM 1966 1893486 - 1893472 - G 72 -11.4 -3.31322 | CCGAAGGCCCCAGAA GGCAGG TCA CCTGCC CCGGCAGCACGGTCA TM1040_1802 1894817 - 1893699 - | hypothetical protein TERM 1967 1894164 - 1894175 + g 78 -2.2 -5.04385 | CAGTTGGTCCACCAC GATC TGCG GGTC TTTTTTGGCGATGTC TERM 1968 1894770 - 1894751 - G 76 -7 -4.57341 | opp_overlap 1894751 1894753, overlap 1894753 AAGCCGCGTCAAAAA GCCCCGCC AGAT AGCGGGTC TTTTCCACGTTAAAA TERM 1969 1894800 - 1894787 - G 78 -6.7 -4.62069 | TTTCCACGTTAAAAA GCTGA TCCT TCAGC GAAAACGACTCGGCC TM1040_1803 1895601 - 1894822 - | short-chain dehydrogenase/reductase SDR TM1040_1804 1895802 - 1896818 + | hypothetical protein TM1040_1805 1897289 - 1896897 - | hypothetical protein TERM 1970 1897262 - 1897232 - G 89 -16.1 -3.29144 | opp_overlap 1897237 TCAGCGCTGTCAGAA CGGCATAGCGCGC CCGGC GCGCGCTGCGCCG GGCTTGGGATTTAAG TERM 1971 1897237 - 1897271 + g 70 -9.8 -3.53811 | opp_overlap 1897232 GCTGTCAGAACGGCA TAGCGCGCCCGGCGCG CGC TGCGCCGGGCTTGGGA TTTAAGAAACCTGAA TM1040_1806 1897587 - 1897294 - | protein of unknown function DUF883, ElaB TM1040_1807 1897799 - 1899487 + | peptide chain release factor 3 TERM 1972 1899491 - 1899518 + F 72 -10.5 -3.51232 | opp_overlap 1899480 1899490 1899493, overlap 1899487 1899493 ATGATGGTCTAACAC CACGGGCGCTC CTCACC GGGCGCCCGTC TTGGTTTCAAAAGGG TERM 1973 1899493 - 1899516 + F 78 -13.1 -3.33151 | opp_overlap 1899490 1899493, overlap 1899491 1899487 GATGGTCTAACACCA CGGGCGCTC CTCACC GGGCGCCCG TCTTGGTTTCAAAAG TERM 1974 1900360 - 1900372 + G 81 -4.7 -5.00616 | opp_overlap 1900351 GGAAGAGGGCGAATC CGGCC TCA GGGCG TTTTTTGACGAGACC TERM 1975 1900421 - 1900433 + G 71 -6.9 -4.18018 | CTCCGCCAAACGCTT GCCTC AGA GGGGC TTTTGCGTCAACGCG TM1040_1808 1899560 - 1900498 + | hypothetical protein TERM 1976 1901417 - 1901404 - g 70 -3.7 -4.68424 | overlap 1901396 GAAGGCAGCGAAAAA CGCCG GGTT CTGCG CGAGCTGATCAACCA TM1040_1809 1900693 - 1902174 + | DEAD/DEAH box helicase-like TERM 1977 1902206 - 1902228 + T 100 -11.3 -4.96848 | gap 1, opp_overlap 1902206 TGACGTGAATGGAAA CCGCCC-AGC CTCG GCTTGGGCGG TTTTTATATACGACA TERM 1978 1902228 - 1902206 - T 80 -11.3 -3.76125 | gap 1, opp_overlap 1902206 TGACGTGAATGGAAA CCGCCC-AGC CTCG GCTTGGGCGG TTTTTATATACGACA TM1040_1810 1902666 - 1902340 - | hypothetical protein TERM 1979 1902651 - 1902685 + g 95 -11.6 -4.59773 | gap 2, opp_overlap 1902656, overlap 1902656 GACACGCCGCTTGAC GA-AAACGCCC-GGCC ACACA GGCCCGGGCGTTTCTC TTTTTCCACGTCGCA TERM 1980 1902656 - 1902679 + g 95 -11.7 -4.55887 | gap 1, opp_overlap 1902656, overlap 1902651 GCCGCTTGACGAAAA CGCCC-GGCC ACACA GGCCCGGGCG TTTCTCTTTTTCCAC TERM 1981 1902679 - 1902656 - G 89 -11.7 -4.25104 | gap 1, opp_overlap 1902651 1902656 GCCGCTTGACGAAAA CGCCC-GGCC ACACA GGCCCGGGCG TTTCTCTTTTTCCAC TERM 1982 1902789 - 1902816 + r 100 -17 -4.82855 | opp_overlap 1902789 CCTGCCAACGTAAAA GCGCCCGGAAGA TCTC TCCTCCGGGCGC TTTTTGGGTTTCATG TERM 1983 1902816 - 1902789 - R 100 -19.2 -4.27316 | opp_overlap 1902789 CCTGCCAACGTAAAA GCGCCCGGAAGA TCTC TCCTCCGGGCGC TTTTTGGGTTTCATG TM1040_1811 1904218 - 1902842 - | TRAP dicarboxylate transporter- DctM subunit TERM 1984 1904215 - 1904203 - G 70 -3.4 -4.63527 | TGACCAGTGTAAAAA GAAG AACCA CTTC CATCAGTCATGCTCT TM1040_1812 1904895 - 1904218 - | tripartite ATP-independent periplasmic transporter DctQ TERM 1985 1904954 - 1904979 + r 75 -13.3 -2.70315 | overlap 1904952 1904951 TCGACCGCTTGGGTG TCAGAGCGCAG CGCG CCGCGCTCTGA TCAATTTGGTGTCTG TM1040_1813 1906029 - 1905025 - | TRAP dicarboxylate transporter, DctP subunit TM1040_1814 1907505 - 1906276 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 1986 1907227 - 1907216 - G 74 -3.6 -4.73108 | TCGAGAAAATCAAAA GCCC CCTC GGAC ATCGCCCGCACCGCC TM1040_1815 1909253 - 1907502 - | periplasmic sensor signal transduction histidine kinase TERM 1987 1908988 - 1908960 - GH 70 -11.8 -2.67059 | overlap 1908959 GTAAAACACATCAAG TGCGCCGGAT TTATCCGCG ATCCGGCGCA AGAGCGCTGTGGCGC TERM 1988 1909647 - 1909636 - gH 71 -7.2 -4.0371 | opp_overlap 1909646 CAGCCGCGAGATAAA GGCG CTTG CGCC GGGGCTAGAGACGCT TM1040_1816 1909253 - 1910500 + | cytochrome P450 TERM 1989 1910613 - 1910598 - fH 75 -6 -4.56597 | opp_overlap 1910578 1910608, overlap 1910577 1910600 TCTCCTCTGCAAAAA CGCGCC TTTG GGCGGG CTGCCTCTGGTTTCG TM1040_1817 1910678 - 1911868 + | hypothetical protein TERM 1990 1913031 - 1913055 + G 76 -9.1 -4.11216 | GGTCAACGGGCAGTC GGGGCGCGTGC AGG GCGAACGCCCC TTTTCCGCCTGGAAG TM1040_1818 1912042 - 1913139 + | hypothetical protein TM1040_1819 1913416 - 1913886 + | D-tyrosyl-tRNA deacylase TERM 1991 1914053 - 1914037 - f 72 -3.6 -4.69053 | overlap 1914039 CACCATTCAAGAAAA TCCGGG GCCAA CCCGTA ACCTCGACAGGGAGA TM1040_1820 1914075 - 1915658 + | twin-arginine translocation pathway signal TERM 1992 1915683 - 1915705 + G 85 -15.6 -3.20307 | opp_overlap 1915681, overlap 1915681 GGTGATCAAACTATT GGCTCAGCGC ATT GCGCTGAGTC TCTTCCTGCTGTTGA TM1040_1821 1915660 - 1916616 + | binding-protein-dependent transport systems inner membrane component TM1040_1822 1916613 - 1917428 + | binding-protein-dependent transport systems inner membrane component TERM 1993 1918254 - 1918237 - g 74 -6.9 -4.32034 | CGAGCACGAGGAAAA GGCCCCC ACCG AGGAGCC GATCCTGTCGGTGCG TM1040_1823 1917425 - 1919062 + | ABC transporter related TERM 1994 1919148 - 1919119 - f 84 -13.5 -3.62535 | CGAAAGACGATAGAA GCCCTGTTCGGCC GCAA GGCCGGACAGCGC CCGACCCTCCCCCCA TM1040_1824 1919245 - 1920081 + | hypothetical protein TM1040_1825 1920125 - 1920685 + | hypothetical protein TM1040_1826 1921682 - 1920735 - | Alpha/beta hydrolase fold-3 TERM 1995 1920828 - 1920799 - G 71 -7.8 -4.13282 | gap 1 ACGATACGTTCAAAA CCGTCGC-GCGCC CGGCC GACGCTGTGACGG GCGCGCAGATAGCCA TERM 1996 1921755 - 1921774 + r 93 -10.7 -4.64844 | opp_overlap 1921755, overlap 1921750 GGCAAAATGAAAAAA GCACGCC AGACGC GGCGTGC TTTTCTGTGTCTCGA TERM 1997 1921774 - 1921755 - R 100 -11.4 -5.46698 | opp_overlap 1921755 1921750 GGCAAAATGAAAAAA GCACGCCA GACG CGGCGTGC TTTTCTGTGTCTCGA TM1040_1827 1923687 - 1921801 - | acyl-CoA synthetase TERM 1998 1922428 - 1922412 - G 74 -5.7 -4.57073 | TATTGCCGGCAAAAA CGCCCGG CGT CTGGACG CAGATCTCGCCGATC TM1040_1828 1925799 - 1923997 - | ABC transporter, ATP-binding/permease protein TERM 1999 1925096 - 1925084 - G 70 -3.3 -4.58395 | GTCATCTCGGAAAAA TGCGC CCG GCTCA GGTCCTCATGGGTAA TM1040_1829 1926225 - 1927085 + | hypothetical protein TERM 2000 1927221 - 1927200 - f 93 -12.9 -4.28361 | opp_overlap 1927200 CTAACTGCAGGAAAA GGCGGGGGC AGAT GCCTCCGCC TTTGGTTTGGAAGGG TERM 2001 1927200 - 1927221 + F 100 -15.1 -4.05788 | opp_overlap 1927200 CTAACTGCAGGAAAA GGCGGGGGC AGAT GCCTCCGCC TTTGGTTTGGAAGGG TM1040_1830 1927315 - 1927812 + | hypothetical protein TM1040_1831 1928956 - 1927865 - | protein of unknown function DUF900, hydrolase-like TERM 2002 1929247 - 1929259 + G 70 -3.3 -4.61566 | GTCTCCATCCCCTGC GTCCT TTT GGGGC TTTTGTGCTTTGCAG TM1040_1832 1929196 - 1930872 + | hypothetical protein TERM 2003 1931034 - 1931060 + T 82 -15.1 -2.97747 | opp_overlap 1931035 ACGTGACAAACAAAA AGCCCCCTCCC ATTGC GGGAGGGGGCA TCTCTGGTATGCGCC TERM 2004 1931059 - 1931035 - T 100 -19.3 -5.38054 | opp_overlap 1931034 CGTGACAAACAAAAA GCCCCCTCCCA TTG CGGGAGGGGGC ATCTCTGGTATGCGC TM1040_1833 1931575 - 1931108 - | hypothetical protein TM1040_1834 1931935 - 1934538 + | RTX toxins and related Ca2+-binding proteins-like TM1040_1835 1935253 - 1935987 + | cobalamin (vitamin B12) biosynthesis CbiX protein TERM 2005 1936484 - 1936467 - g 76 -5.5 -4.59773 | gap 1, overlap 1936468 CGCTACGCCGAAAAA GGCTGGCA GGT CGCC-GCC GCAACCGAACTTGAG TERM 2006 1936960 - 1936971 + G 71 -5.8 -4.40561 | opp_overlap 1936952 GCATCAACGCGATGC GCGA CAGC TCGC TTGTTTTTGCCCCGC TM1040_1836 1936107 - 1937426 + | L-glutamine synthetase TERM 2007 1937827 - 1937812 - g 70 -3.2 -4.62471 | overlap 1937814 1937816 GGCAAGGTCGAAAAA TTCAGC GGCG GCTGGA GCGTGGGCCACACGC TM1040_1837 1937482 - 1938162 + | glutamine amidotransferase, class I TERM 2008 1939015 - 1939040 + G 73 -9.1 -3.86015 | overlap 1939002 TTTCCGGTCCCCAAG GTGGTGAAACG GATG CGTTTTATCAC TTTATCGGCGGGCTG TM1040_1838 1938162 - 1939529 + | L-glutamine synthetase TERM 2009 1939537 - 1939564 + F 100 -15.6 -3.83324 | opp_overlap 1939555, overlap 1939530 ACGTCTGATCCATCA GCGCTGCGCC CGGTCAAA GGCGCAGCGC TTTAGGTATTTATCA TERM 2010 1939959 - 1939932 - g 77 -8.3 -4.37092 | overlap 1939933 AGGTGCTGGAGAAAA TGGTGGGCGCC GAGGAT GCCGCCCACCT GTGGCGCCTCGGCGA TM1040_1839 1939640 - 1940950 + | FAD dependent oxidoreductase TERM 2011 1941131 - 1941149 + F 83 -11.6 -3.87815 | AATCTGCTTTTTTGC GCGGCGGG TCG CCCGGCGC TTTCTGAGGGTAAAA TERM 2012 1941225 - 1941211 - f 71 -8.5 -3.90112 | opp_overlap 1941220 TTCCTGTCAACCAAA CCCCG GAACG CGGGG GACTCCTTGGCATTG TM1040_1840 1941291 - 1942529 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 2013 1942554 - 1942583 + T 86 -14.3 -3.62046 | opp_overlap 1942558, overlap 1942556 CCCTTGCACCATCCC AATAGGGCCGCGT CAGA GCGCGGCCCTATC TTGTTGAGACCCTAC TERM 2014 1942556 - 1942581 + T 93 -16.9 -3.38991 | opp_overlap 1942558, overlap 1942554 CTTGCACCATCCCAA TAGGGCCGCGT CAGA GCGCGGCCCTA TCTTGTTGAGACCCT TERM 2015 1942579 - 1942558 - T 81 -14.4 -3.07043 | opp_overlap 1942556 1942554 TGCACCATCCCAATA GGGCCGCG TCAGAG CGCGGCCC TATCTTGTTGAGACC TERM 2016 1942749 - 1942731 - T 100 -16 -5.22039 | opp_overlap 1942731 CCCAAACGCAAAAAA GCCCCGGA TTA TCCGGGGC TTTCTTATCACGGGT TERM 2017 1942731 - 1942749 + T 100 -16 -4.30987 | opp_overlap 1942731 CCCAAACGCAAAAAA GCCCCGGA TTA TCCGGGGC TTTCTTATCACGGGT TM1040_1841 1943336 - 1942779 - | polyhydroxyalkonate synthesis repressor, PhaR TERM 2018 1943061 - 1943038 - G 71 -7.4 -4.21827 | gap 1, overlap 1943041 CGAAACATGTCAAAA GAAGCCTGCAG AAA CTGC-GGCATC ACCCCGCCTCCGGGC TERM 2019 1943058 - 1943041 - G 75 -7.7 -4.2142 | gap 1, overlap 1943038 AACATGTCAAAAGAA GCCTGCAG AAA CTGC-GGC ATCACCCCGCCTCCG TERM 2020 1943577 - 1943597 + r 95 -14 -3.9461 | opp_overlap 1943577 TCAGCCATACAAAAA GGGCAGGC GCTGG GCCTGCCC TTCTTCTTCGGGGGA TERM 2021 1943597 - 1943577 - R 100 -14 -4.99035 | opp_overlap 1943577 TCAGCCATACAAAAA GGGCAGGC GCTGG GCCTGCCC TTCTTCTTCGGGGGA TERM 2022 1943661 - 1943640 - R 73 -8.7 -3.99315 | gap 1, opp_overlap 1943639 AGGAGAGCTAAACAA GCC-CCCGGA CTT TCCGGGCAGC GCTTACTTTGCAGCA TERM 2023 1943671 - 1943681 + r 71 -6.8 -4.20783 | GGCAGCGCTTACTTT GCAG CAG CTGC TTTCTTGGCTGCGGT TM1040_1842 1944110 - 1943664 - | phasin, PhaP TERM 2024 1943780 - 1943793 + g 78 -2.3 -5.055 | overlap 1943781 TCAGCAGCTCAACGG TGTCC ATCT GGACC TTTTTTGCAACTTCG TERM 2025 1944563 - 1944547 - g 75 -13.7 -2.83715 | opp_overlap 1944544 GGGATCAGGACCAGA TGCGGGC CTC GCCCGCA CCATCTCTCCGCCTC TERM 2026 1944596 - 1944612 + G 76 -10.1 -3.83324 | CGGGGATTGCATCTC TGGTGGC GGC GCCGCCA TTTCGCTCTTTATGC TM1040_1843 1944522 - 1944884 + | hypothetical protein TM1040_1844 1944980 - 1945750 + | hypothetical protein TM1040_1845 1946600 - 1945917 - | ABC transporter related TERM 2027 1946185 - 1946162 - G 79 -12.4 -3.53012 | opp_overlap 1946164 1946165, overlap 1946133 GCTCGCCGCCGGAAA GCGCCGCG GGGCGATG CGCGGCGC GGGTTTCGAGCCCCA TM1040_1846 1947876 - 1946593 - | LolC/E family lipoprotein releasing system, transmembrane protein TERM 2028 1947874 - 1947860 - G 70 -3.5 -4.70879 | gap 1, opp_overlap 1947860 TCGAAACGGGAAAAA GGC-GC AGTC GCAGCC ATTTAGGAGGTGTTC TM1040_1847 1948477 - 1947965 - | hypothetical protein TERM 2029 1948221 - 1948248 + g 70 -9.8 -3.54424 | overlap 1948234 TCGGACGAGAGCCTG CCATAGCGGTCG ATGG TGGCCGCCATGG TTTCGGCCCGTGCGG TM1040_1848 1949188 - 1948766 - | thioesterase superfamily protein TERM 2030 1949231 - 1949259 + r 75 -9.6 -3.75629 | TAGCGCGTGAGGCGG TCGGTGGATGTG GAGAA CATAACCACCGA TTTGCCTTCAACCTG TM1040_1849 1950009 - 1949215 - | hypothetical protein TM1040_1850 1950744 - 1950214 - | bifunctional deaminase-reductase-like TERM 2031 1950435 - 1950468 + g 79 -13.1 -3.53811 | gap 1, opp_overlap 1950419 GCCCCTCGGCGCGCG CGATCTCGGCGCGGAG GCC CTCGGCGCCGGGG-CG TTTCAGGACAGTAAC TERM 2032 1950720 - 1950703 - G 71 -8.4 -4.05033 | CGGACCGGAGATAAA GCCGTC GAGCGA GACGGC GACATCATAGATGAC TM1040_1851 1952174 - 1951398 - | hypothetical protein TERM 2033 1951961 - 1951944 - G 71 -6.3 -4.42765 | gap 1, overlap 1951946 GGCGAAAAAATCAAA GA-GCGGT GCC ACCGCATC CGCGTGGCGACCTGC TERM 2034 1951958 - 1951946 - G 71 -9.1 -3.8049 | overlap 1951944 CGAAAAAATCAAAGA GCGGT GCC ACCGC ATCCGCGTGGCGACC TERM 2035 1952233 - 1952264 + r 75 -13.6 -2.65591 | opp_overlap 1952235, overlap 1952230 1952229 CATGCGGCACAGAAA AACCCCGCCCGACG GACC TGTCGGGCGGGGCC TCAATTCTGTATGTG TERM 2036 1952262 - 1952235 - R 100 -19.9 -4.96848 | opp_overlap 1952233 1952230 1952229 TGCGGCACAGAAAAA CCCCGCCCGAC GGACCT GTCGGGCGGGG CCTCAATTCTGTATG TM1040_1852 1953644 - 1952289 - | prolyl-tRNA synthetase TM1040_1853 1954169 - 1953837 - | hypothetical protein TERM 2037 1954306 - 1954317 + H 72 -3.6 -4.72272 | ACCGTATAAACGCTT GTGC CCTC GCGC TTTTTGGTGAGGCCC TERM 2038 1954454 - 1954468 + H 90 -9.2 -4.85599 | TTTACACTCCCTCGC CGGGCG TCC TGCCCG TTTTTGTCCGATGCC TM1040_1854 1954506 - 1956245 + | GAF sensor hybrid histidine kinase TERM 2039 1956529 - 1956556 + G 72 -2.6 -4.78107 | overlap 1956498 TGAGGGCGCAACCGC GGTGATCACGGT GGGG GCCGTGCTGATC TTTTTGATCCTGCTG TM1040_1855 1956344 - 1957486 + | hypothetical protein TM1040_1856 1957540 - 1958217 + | chromosomal replication initiator, DnaA TM1040_1857 1958393 - 1960039 + | Ppx/GppA phosphatase TERM 2040 1960046 - 1960025 - T 83 -9.3 -4.56597 | opp_overlap 1960025 1960028, overlap 1960028 GCGCTGCTGGAAAAA GACGCGCGC GACT GAGCGCGCC CTTTGCACCCCGCAC TM1040_1858 1960547 - 1960107 - | hypothetical protein TM1040_1859 1961605 - 1960571 - | endonuclease/exonuclease/phosphatase TERM 2041 1961254 - 1961244 - G 71 -8.2 -4.08064 | opp_overlap 1961241 1961244, overlap 1961231 AACGTGCCGTCAAAA CGCG GCG CGCG TGCTGTGTCCAATGG TM1040_1860 1962293 - 1961586 - | heat shock protein DnaJ-like TM1040_1861 1962836 - 1962303 - | GCN5-related N-acetyltransferase TM1040_1862 1963474 - 1962836 - | hypothetical protein TM1040_1863 1963667 - 1964164 + | glyoxalase/bleomycin resistance protein/dioxygenase TM1040_1864 1964646 - 1964494 - | hypothetical protein TM1040_1865 1966647 - 1964662 - | methylmalonyl-CoA mutase TERM 2042 1965119 - 1965152 + g 80 -10.2 -4.13767 | GCAAAGCCCTCGTCG CCCTCGTATGCGGC GCCGTA GACGCCTGCGAGGG TTTTGACCTCGGCGC TM1040_1866 1967707 - 1966754 - | hypothetical protein TERM 2043 1966848 - 1966861 + g 70 -5.2 -4.49906 | GGCGCAGGGGGAGTT GCGG TCGCGT CCGC TTTGTTTGGATCTTC TERM 2044 1967620 - 1967634 + g 71 -8.6 -4.12456 | overlap 1967619 AGGCGATGCCATATT GCGATA GCG TATCGC TTTTGCGGGTCATGT TERM 2045 1967796 - 1967820 + H 71 -7.7 -4.18018 | AAAGGTGATTTTTTT GTGGCCGCAGG GTT TCAGCGGTCGC TTTTACGTCGAGAGC TM1040_1867 1967864 - 1968388 + | hypothetical protein TM1040_1868 1969112 - 1968507 - | hypothetical protein TERM 2046 1969232 - 1969209 - R 86 -17.4 -2.62184 | CGCTCTCCCATAGCA GCCCACCGCC GCGA GGCGGCGGGC TGTCAGGGGAGGATA TM1040_1869 1971301 - 1969271 - | carbamoyl-phosphate synthase L chain, ATP-binding TERM 2047 1971383 - 1971352 - R 100 -15.9 -5.24129 | gap 1 CGCGCGCACAAAAAA CCGCCGCGCACGGG GATGT CCCGTG-GCGACGG TGCGCCCGCATCAAA TERM 2048 1971434 - 1971460 + r 74 -6.5 -4.42238 | GGAAGGCCCGCGCGC CCGAGGCCG GATTAGCAG CGGCCTGGG TTTTCCTTGCAGTAG TM1040_1870 1971648 - 1971445 - | putative lipoprotein TM1040_1871 1971898 - 1971641 - | hypothetical protein TERM 2049 1971937 - 1971901 - R 87 -12.3 -4.13767 | gap 1, opp_overlap 1971896, overlap 1971902 GGTCTGAGCCCAAAA GCGGGCAGCTG-GCGC GGGGGG GCGCACAGCTGCCCAG TCAGGTTTTGGGGCC TERM 2050 1971936 - 1971902 - R 85 -15.8 -3.08046 | gap 1, opp_overlap 1971896, overlap 1971901 GTCTGAGCCCAAAAG CGGGCAGCTG-GCGC GGGGGG GCGCACAGCTGCCCA GTCAGGTTTTGGGGC TM1040_1872 1972532 - 1972185 - | hypothetical protein TERM 2051 1972591 - 1972570 - R 100 -17.3 -3.55444 | opp_overlap 1972562 1972559 CCCGCAGGTCGGAAA GGTCCGGCC ACAG GGCCGGACC CCTGAAGTGTTTACT TM1040_1873 1972745 - 1972602 - | putative lipoprotein TM1040_1874 1973274 - 1972960 - | hypothetical protein TERM 2052 1973449 - 1973418 - R 83 -9.4 -4.57341 | gap 1, opp_overlap 1973420 AACGCGCCGTAAAAA GACCGACGC-CTGCG CGG CGCAGAGCACGGGTC GTGACAGGCGCTGGT TERM 2053 1973643 - 1973664 + r 76 -13.7 -2.82015 | gap 1 CTGCCGGGGCTGCGG GCGCAGCGCC TAG GGCGC-GCGC TATACTCGGTCTGGA TM1040_1875 1974230 - 1973883 - | hypothetical protein TERM 2054 1974296 - 1974258 - R 70 -12.4 -2.58544 | gap 1, opp_overlap 1974256 1974259, overlap 1974257 TCGGACGCCGACAAG GCGAAGGCGCGCGCACG GCCCTG CG-GCGCGCGCCTCCAG TGATATGTGGCACCT TM1040_1876 1974792 - 1974319 - | hypothetical protein TM1040_1877 1976371 - 1974839 - | propionyl-CoA carboxylase TERM 2055 1977390 - 1977433 + G 74 -7.5 -4.36914 | gap 1, overlap 1977379 TACTCGCTCGCGGCG GGCCTGTCGTC-AGGTAG CTTCTTTGC CTACCTCGGCGGCAGCCC TTTTGTGGGCACCAA TM1040_1878 1976745 - 1977938 + | Bcr/CflA subfamily drug resistance transporter TERM 2056 1978000 - 1977966 - f 100 -14.2 -4.21607 | overlap 1977996 CCGACTGAACATAAA GTGTTTCGCTTCGGGC TTT GCCCGAAGCGACCCGC GCGCAAGCGCGCCCC TERM 2057 1978039 - 1977996 - f 100 -29.6 -2.52464 | opp_overlap 1978011 1978035, overlap 1977966 CTTTGCCCGAAGCGA CCCGCGCGCAAGCGCGCCCC GGTA GGGGCGCGCTTGCGCGCTTG GCCCAACTGCGGGCC TERM 2058 1978035 - 1978058 + F 73 -5.1 -4.56597 | opp_overlap 1977996, overlap 1978011 1978039 GGGGCGCGCTTGCGC GCTTGGCCC AACTGC GGGCCTTGC TTTTTCAAAGCAGGG TERM 2059 1978079 - 1978101 + F 79 -12.6 -3.53811 | CAAAGCAGGGGCCGT GGGCGGGAGG TCT CCCCTCGCCC TTTCGGGGAGCTCAA TERM 2060 1979251 - 1979275 + G 74 -5.5 -4.57073 | opp_overlap 1979265, overlap 1979225 TTTGTGGAACGTCCA CCGCGCCTTTG AAA CACCGGGGCGG TTTTTGCGACAGCTC TM1040_1879 1978118 - 1979593 + | XRE family transcriptional regulator TERM 2061 1979625 - 1979603 - T 95 -10.5 -4.75776 | AATTGAACGCAAAAA GGCCACCCC GCGTG AGGGCGGCC CGTGATGCGTCATCG TM1040_1880 1979887 - 1979648 - | hypothetical protein TERM 2062 1979825 - 1979842 + g 70 -3.3 -4.58283 | overlap 1979826 1979827 GTCCGACTGCTTGAG TTCGCTC ATCA GAGCGGC TTTTTCGGGGAATTC TERM 2063 1980243 - 1980263 + H 74 -7.5 -4.20516 | overlap 1980244 TAAAGCGTTGTTCGC TGGCTCGGA TTA TGCGAGCCG TTTCTTCCATGACAG TM1040_1881 1980254 - 1980664 + | hypothetical protein TERM 2064 1980737 - 1980711 - T 100 -15.9 -5.252 | gap 1 CATGTCTATAAAAAA CCGCCCCTCTGC GGAT GCAG-GGGGCGG CTAGGCGTGACTAAC TM1040_1882 1982418 - 1980763 - | choline dehydrogenase TM1040_1883 1984032 - 1982575 - | betaine aldehyde dehydrogenase TERM 2065 1984244 - 1984272 + r 76 -6.7 -4.63932 | AGCGTGTTTAGTGTA CGGTCTCGATCTT GGA GAAATCGAGGTCG TTTTCTTCGGGGCTG TM1040_1884 1985444 - 1984236 - | hypothetical protein TERM 2066 1984906 - 1984886 - G 70 -3.1 -4.63527 | overlap 1984887 TCAGCAGCGCAAAAA GGCCGGTGG AGC CCAGCGACA GGATGCGCACATATT TERM 2067 1985560 - 1985589 + H 79 -7.3 -4.56597 | opp_overlap 1985560, overlap 1985566 GCCTGAATAAACTAA CCAAATTTTGAAT GGTC ATTCAAGTTTTGG TTTTTCGAGGACAAA TERM 2068 1985566 - 1985583 + H 72 -3.5 -4.77757 | opp_overlap 1985560, overlap 1985560 ATAAACTAACCAAAT TTTGAAT GGTC ATTCAAG TTTTGGTTTTTCGAG TM1040_1885 1985642 - 1986232 + | TetR family transcriptional regulator TM1040_1886 1987381 - 1986308 - | integral membrane protein-like TERM 2069 1987454 - 1987466 + r 78 -6.2 -4.70266 | ACGACAGGTGCAGCG GCCC TTAAC GGGC TTTTTCCATGATATT TM1040_1887 1988431 - 1987499 - | hypothetical protein TM1040_1889 1991252 - 1990311 - | Pirin-like TM1040_1888 1988725 - 1990362 + | ABC transporter related TM1040_1890 1991974 - 1991345 - | lysine exporter protein LysE/YggA TM1040_1891 1992084 - 1993004 + | chromosome replication initiation inhibitor protein TERM 2070 1993607 - 1993628 + G 76 -5.8 -4.71426 | opp_overlap 1993607 ACAACGGTGAGTGAA GCCTGCAG TTCGGC CTGCACGC TTTTGTTCATGGCCG TERM 2071 1993658 - 1993681 + G 70 -10.2 -3.55444 | opp_overlap 1993649 GGAACACGGCGCCAC CTCGACCCGC AGGC GCGGCTCGGG TTTCACGGCTACGGC TM1040_1892 1993025 - 1993882 + | hypothetical protein TERM 2072 1994093 - 1994066 - T 100 -17 -5.19275 | ACCCAGAAAAGAAAA CGGCCCCACGCC TGAA AACGTGGGGCCG GTATCACAAGCCTGC TM1040_1893 1994861 - 1994121 - | hypothetical protein TM1040_1894 1995183 - 1994821 - | hypothetical protein TERM 2073 1996867 - 1996842 - g 72 -11.1 -3.38991 | gap 1, opp_overlap 1996840, overlap 1996840 ATGTGCTCAACAACA CGGCGACCGCGA TTG TGGCGG-CGCCG GTGGGGATCTCCATG TM1040_1895 1995323 - 1997098 + | TrkA-C TM1040_1896 1997303 - 1998976 + | putative FAD-binding dehydrogenase TM1040_1897 1999008 - 1999481 + | hypothetical protein TM1040_1898 2000039 - 1999575 - | twin-arginine translocation pathway signal TERM 2074 2000101 - 2000078 - R 86 -6 -5.10933 | gap 1 CTATCGAAAACAAAA GTGGGA-AGCG GGA CGCTCTACCAC AAGGGGAATTGCATC TM1040_1899 2001935 - 2000157 - | TrkA-C TM1040_1900 2002217 - 2003110 + | beta-lactamase TERM 2075 2003392 - 2003365 - T 74 -12 -3.06696 | overlap 2003391 CTCCCGCCCAAGACA CGCTGCTCTGGC CTGC GCCAGAGAAACG GTCTCAGATGGGCCG TERM 2076 2003449 - 2003391 - T 100 -27.5 -4.03234 | gap 2, opp_overlap 2003394 2003395 2003437, overlap 2003365 2003392 CCTGCGCCAGAGAAA CGGTCTCAGATGGGCCGGGCCGCGCACGC AAA GCGTGCGCGGCCCGGCCCAACGG-GAG-G AGGGCTTTTTTCAAA TERM 2077 2003449 - 2003392 - T 100 -27.7 -3.01726 | gap 1, opp_overlap 2003394 2003395 2003437, overlap 2003391 CTGCGCCAGAGAAAC GGTCTCAGATGGGCCGGGCCGCGCACGC AAA GCGTGCGCGGCCCGGCCCAACGG-GAGG AGGGCTTTTTTCAAA TERM 2078 2003394 - 2003452 + T 87 -17.6 -2.75708 | gap 4, opp_overlap 2003391 2003392, overlap 2003395 2003437 GCGCCAGAGAAACGG --T-CT-CAGATGGGCCGGGCCGCGCACGC AAA GCGTGCGCGGCCCGGCCCAACGGGAGGAGG GCTTTTTTCAAAAAG TERM 2079 2003437 - 2003454 + T 72 -2.5 -5.00616 | opp_overlap 2003391 2003392, overlap 2003394 2003395 AGCGTGCGCGGCCCG GCCCAAC GGGA GGAGGGC TTTTTTCAAAAAGCA TM1040_1901 2004327 - 2003515 - | hypothetical protein TM1040_1902 2004704 - 2005543 + | hypothetical protein TM1040_1903 2006295 - 2005708 - | 5-formyltetrahydrofolate cyclo-ligase TM1040_1904 2007706 - 2006318 - | magnesium transporter TERM 2080 2006463 - 2006437 - G 76 -10 -3.78934 | TTCGGTCCAGAATAA CCGGGATCACGG TCC CTGCGAGCCCGG CGACGACAAGGTTGA TERM 2081 2008787 - 2008821 + G 76 -6.3 -4.68593 | gap 1, overlap 2008788 CGCGAGGGCCACCGG ATCGGCCTTGCCACCG ACAC CGGCGGC-GGGTCGAG TTTTTCGATGCTGCG TM1040_1905 2007845 - 2009134 + | guanine deaminase TERM 2082 2009139 - 2009162 + T 75 -9.5 -3.78934 | opp_overlap 2009141, overlap 2009141 AAGCGGTCTAGCAAA AAGGGGCGC AGCCGC GCGCCCCTC TTCTTCTAACCAAAA TERM 2083 2009141 - 2009160 + T 78 -12.1 -3.4811 | opp_overlap 2009141, overlap 2009139 GCGGTCTAGCAAAAA GGGGCGC AGCCGC GCGCCCC TCTTCTTCTAACCAA TERM 2084 2009160 - 2009141 - T 100 -12.8 -4.72272 | opp_overlap 2009139 2009141 GCGGTCTAGCAAAAA GGGGCGCA GCCG CGCGCCCC TCTTCTTCTAACCAA TM1040_1906 2010573 - 2009233 - | hydroxydechloroatrazine ethylaminohydrolase TERM 2085 2009405 - 2009376 - G 86 -14.3 -3.30124 | gap 1 GCGGACCGGCCAGAA CCAGC-GCCGCTGG ATC CCAGCTGCCGCTGG ACGCCAGCCCGGAGA TM1040_1907 2011578 - 2010784 - | histidinol-phosphate phosphatase, putative, inositol monophosphatase TM1040_1908 2011843 - 2011553 - | hypothetical protein TERM 2086 2011802 - 2011785 - GR 93 -10.5 -4.56914 | opp_overlap 2011785 2011792 TTACGCAAAGCAAAA GGCCGCC CAAA GGCGACC TCTGTATAGTAAGCA TM1040_1909 2012237 - 2011866 - | XRE family transcriptional regulator TERM 2087 2012493 - 2012475 - H 70 -3.1 -4.7497 | overlap 2012478 TTCATGCATCAAAAA TTATCGC GAAAG GCGATCA GAATACGGTTTGCAG TERM 2088 2012844 - 2012854 + G 70 -4.6 -4.56597 | overlap 2012840 TTTCCGAATTGGCGA CCGT GTT GCGG TTTTTGGCGGACAAG TERM 2089 2012877 - 2012890 + G 74 -3.7 -4.72986 | opp_overlap 2012870 2012886, overlap 2012878 CGGACAAGGCGGATT GGCCG AAAT CGGCG TTTTTGATGCCGCTC TM1040_1910 2012602 - 2013576 + | zinc-binding alcohol dehydrogenase TM1040_1911 2014462 - 2013545 - | LysR family transcriptional regulator TM1040_1912 2014585 - 2014797 + | hypothetical protein TERM 2090 2014876 - 2014833 - f 71 -7.2 -4.08394 | gap 1, overlap 2014838 AGACCCTTGTCAAAA CCGAACCGGCCCCGCC-CTGC CCT GATGTGGCGCAGCGGGTCCGG TAAAAACTTGTAAAT TERM 2091 2014876 - 2014838 - f 70 -10.8 -3.36823 | overlap 2014833 CTTGTCAAAACCGAA CCGGCCCCGCCCTGCC CTGATGT GGCGCAGCGGGTCCGG TAAAAACTTGTAAAT TM1040_1913 2015026 - 2015805 + | hypothetical protein TERM 2092 2015858 - 2015832 - f 80 -14.4 -2.99947 | opp_overlap 2015833 CAACTTGCAGACAGA CGGGGCGGATCA CAT CGATCCGCCCCT TTTCTTTTTTCCGAC TERM 2093 2015833 - 2015857 + F 100 -17.2 -5.42198 | opp_overlap 2015832 AACTTGCAGACAGAC GGGGCGGATC ACATC GATCCGCCCC TTTTCTTTTTTCCGA TERM 2094 2016160 - 2016139 - g 75 -8.6 -4.24948 | CTATGACATCGAAAA GCGCCCGG CCCTGC CCGTGCGC CCGGCTGAGACGCGT TM1040_1914 2015909 - 2016448 + | GCN5-related N-acetyltransferase TERM 2095 2016510 - 2016544 + T 70 -10.6 -3.35867 | opp_overlap 2016508 CGAGGAGGAGATACG GCAGAGGAGGACTGCG CCA CGCGCTCCTCCTCCCC TTGGTTCAGAGTTGC TERM 2096 2016947 - 2016927 - T 91 -7.5 -5.27779 | opp_overlap 2016927 TCCAACACGAAAAAA GGCCGCG GCAGATG CGCGACC TTTTCAAAATCTGAG rpmG 2017151 - 2016984 - | 50S ribosomal protein L33 TERM 2097 2017310 - 2017328 + r 86 -11.6 -4.07568 | overlap 2017312 AGGGGGCGATACCGT CTCGCCCC TAG GGGGCGTG TTTTGCGCAGAGAGC TERM 2098 2017312 - 2017326 + r 81 -12.8 -3.63744 | overlap 2017310 GGGGCGATACCGTCT CGCCCC TAG GGGGCG TGTTTTGCGCAGAGA TERM 2099 2017560 - 2017580 + r 80 -11.1 -3.84246 | CTGTTGCCAGCGGTG CGGTGGGCT CTT ACCCCACCG TTTCATCCTTACCCC TM1040_1916 2018532 - 2017873 - | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TM1040_1917 2019306 - 2018542 - | hypothetical protein gatA 2020834 - 2019347 - | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 2100 2019755 - 2019780 + g 70 -4.7 -4.48072 | gap 1 CACGCGGCGCTGCAC CTCGTGGCCAAA GCC TTCGG-CGCGAG TTTTCTCGTACATCT TERM 2101 2019990 - 2020041 + g 91 -8.1 -4.75309 | gap 2, overlap 2019992 CCCTCATCCCAGAGC TTGGCGATCTCGGCGGGCATACCGT CCAT GCGGTATTCGCG-CGGGAT-GCCGA TTTTCTTGCCTTTGA TM1040_1919 2021125 - 2020838 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C TERM 2102 2021394 - 2021382 - H 72 -6.2 -4.4715 | overlap 2021383 TCGCAACCGATAAAA CGGG CTCGC CCCG GACCCAAGCGCGGGC TM1040_1920 2021537 - 2022229 + | beta-lactamase-like TERM 2103 2022307 - 2022279 - g 79 -8.7 -4.16943 | CCGCAGACTGGAAAA GACCCGCCGCGCC ATG GCCGCAAAGGGTC TTAAAACACTGGTGA TM1040_1921 2022229 - 2023398 + | peptidase M24 TERM 2104 2023423 - 2023456 + T 95 -13.8 -4.06419 | overlap 2023408 TTCACCAGTCGGTTA CACTGACAGGCGGG TGATCT CCCGCCCGTCAGCG TTGTTTATAAAAAAC TERM 2105 2023517 - 2023471 - T 85 -4.3 -5.24129 | opp_overlap 2023485 2023489, overlap 2023476 2023509 GTTGTTTATAAAAAA CCACACTTCCCGTTGGGC-CAAG CGC CGCGCGCCCAAAGGGC-GCGCGG CGCGGGTCGCTTTGG TERM 2106 2023485 - 2023527 + T 100 -21.8 -3.53012 | opp_overlap 2023471 2023476 2023509, overlap 2023489 ACCACACTTCCCGTT GGGCCAAGCGCCGCGCGCCC AAA GGGCGCGCGGCGCGGGTCGC TTTGGGCACAGCACA TERM 2107 2023489 - 2023523 + T 100 -24.2 -2.64155 | opp_overlap 2023471 2023476 2023509, overlap 2023485 CACTTCCCGTTGGGC CAAGCGCCGCGCGCCC AAA GGGCGCGCGGCGCGGG TCGCTTTGGGCACAG TM1040_1922 2024221 - 2023619 - | DNA-3-methyladenine glycosylase I TERM 2108 2023860 - 2023850 - G 81 -4.6 -4.87786 | opp_overlap 2023854, overlap 2023851 GTAACGCCAGAAAAA CGCC GCG AGCG CGCCCTCGCTTTGCT TM1040_1923 2024511 - 2024218 - | YCII-related TERM 2109 2024544 - 2024580 + r 73 -13 -2.66435 | gap 1, overlap 2024546 2024548 TTATGAATTGTATCT CAGGC-GGGCGCGGCGA TCTG TTGACGCGCCCAGTCTG TCATCTGCTGCACCT TM1040_1924 2025112 - 2024543 - | TetR family transcriptional regulator TERM 2110 2025171 - 2025212 + r 84 -13.9 -3.57971 | AGGCGTTGATCGTTA TTAGGTCACTCGTCCTAGA CCCC TTTAGGGCAAGTGGCCTAA TTTAGCAATCCGTCT TM1040_1925 2025552 - 2025310 - | hypothetical protein TM1040_1926 2025983 - 2025549 - | CMP/dCMP deaminase, zinc-binding TERM 2111 2025757 - 2025710 - G 84 -10.4 -4.18488 | overlap 2025749 AGGCACCGTAATAAA CGCGCGCGATGCGGGCCGCTGC AATG GCAGCCGCACACATGGCACAGG GCTCCAGCGTCACGT TERM 2112 2027036 - 2027018 - g 70 -4.4 -4.4846 | overlap 2027020 2027022 GAAGCCAAGAAGAAA CCCACCCG CCC CGGACGCG GCCCGCGCAATCCTG TERM 2113 2027195 - 2027178 - g 71 -8.3 -4.13304 | overlap 2027166 AAACCACCGGCAAAA CCGCTGG CAAA CCTGCGG CTCATAAGGGCCAGG TM1040_1927 2026097 - 2027365 + | pseudouridine synthase, Rsu TERM 2114 2027948 - 2027962 + G 75 -7.8 -4.20696 | overlap 2027960 CGTCGCCTGCGTTGG GCTGCA TCT TGCGGC TTTTGGCCTTGATCC TERM 2115 2028356 - 2028345 - g 81 -5.8 -4.8622 | overlap 2028346 GCCCGGAATGAAAAA CTCC TGCT GGAG GACCGGGGCGATCTG TM1040_1928 2027532 - 2028440 + | hypothetical protein TM1040_1929 2028463 - 2029653 + | toxic anion resistance TERM 2116 2029694 - 2029712 + G 93 -17.4 -3.31144 | overlap 2029695 2029705 GATACCGTATTGAGG CCGCGCCC CTT GGGCGCGG TTCTCGCCATGGGGG TM1040_1930 2029664 - 2030617 + | putative lipoprotein TM1040_1931 2031323 - 2030640 - | glutathione S-transferase-like TERM 2117 2031163 - 2031138 - G 79 -9.7 -4.1822 | gap 1 GCTGATCGCAAGAAA CG-CGGGCGC CATTTGC GCGCCCGTCG CAATGTCGATCGCAT TM1040_1932 2033085 - 2031373 - | acetolactate synthase, large subunit TM1040_1933 2035897 - 2033657 - | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 2118 2035249 - 2035274 + g 78 -14.1 -3.14132 | gap 1 GCAGGCGCTCCAGCT CCCGAT-GCGGA TCG TCCGCAATCGGG TTCGTCACCACAACG TERM 2119 2035617 - 2035592 - G 71 -8.9 -3.74077 | gap 1, opp_overlap 2035590 2035592, overlap 2035586 2035593 CGGCATATAGCGAAA GCCCCG-CGCGC TTG GCGCATCGGGGG TGTTGATCACCTTGC TERM 2120 2035616 - 2035593 - G 70 -12.4 -2.84125 | gap 1, opp_overlap 2035592 2035590, overlap 2035586 2035592 GGCATATAGCGAAAG CCCCG-CGCGC TTG GCGCATCGGGG GTGTTGATCACCTTG TERM 2121 2036216 - 2036195 - R 100 -13.7 -5.63517 | opp_overlap 2036195 GCCCGAAACAAAAAA CGCCGAAGG TCTC CCTCCGGCG TTTCTGTCTTTGCAC TERM 2122 2036195 - 2036216 + r 89 -11.5 -4.27886 | opp_overlap 2036195 GCCCGAAACAAAAAA CGCCGAAGG TCTC CCTCCGGCG TTTCTGTCTTTGCAC TM1040_1934 2037481 - 2036243 - | aspartate kinase TM1040_1935 2039064 - 2037616 - | cation transporter TERM 2123 2038361 - 2038315 - G 86 -12.3 -3.91858 | gap 1, overlap 2038339 CACATAGCGCACAAA CGGCAGAGC-CGCGACCACCAT AAAG ATGGCGGCGGCATACTCCGCCG GACCGGAAAACGTGC TERM 2124 2038872 - 2038852 - G 70 -3.1 -4.72272 | overlap 2038870 2038871 TGTGGTGAGCAAAAA GGTCTGGCG GAT CGACAATCC CCGCCCTACCCCATT TM1040_1936 2039879 - 2039112 - | hypothetical protein TERM 2125 2040012 - 2039998 - R 100 -11.4 -4.84359 | GCAGCGGCAGAAAAA TGCCGC ACC GCGGCA AAAACAAGCCCATCC TERM 2126 2040039 - 2040020 - R 72 -5.7 -4.40561 | gap 1, opp_overlap 2040019 2040034, overlap 2040017 CCGCGGCAAAAACAA GCCCATCC TCCCG GGA-GGGC CTATGCTTTCATCTT TM1040_1937 2041208 - 2040105 - | putative GTP cyclohydrolase TERM 2127 2040290 - 2040276 - G 71 -5.6 -4.37658 | opp_overlap 2040278 AAGCGCTTCACAAAA GAGGCG CGC CGCATC TTCCACAAAGATCGG TERM 2128 2041331 - 2041296 - R 81 -3.3 -5.20216 | opp_overlap 2041306, overlap 2041306 TAGATCACCAAAAAA CGCCCCAAAAGGTCA CTGATC TGACCTTTTGCACCA AAGTGGGTCCGGACA TERM 2129 2041396 - 2041366 - R 88 -13.3 -3.71917 | gap 1 ATGTCAAACTCCAAA TGTGGC-GGCGCCC CGCG GGGCGCGAGCCACA CGAAGCTCCAGGGTC TM1040_1938 2042597 - 2041410 - | O-succinylhomoserine sulfhydrylase TERM 2130 2042074 - 2042060 - G 74 -11.4 -3.42996 | CATTATCGACCACAA CGGTCG CGC CGACCG CATGGGCGATCTCGG TERM 2131 2042676 - 2042651 - H 100 -9 -5.60993 | CCGCGCATAAAAAAA CTCCCGTTCG GCCAAG CGAAAGGGAG TCCCGTCGTCCTGAC TM1040_1939 2043063 - 2044004 + | hypothetical protein TM1040_1940 2044836 - 2044201 - | intracellular septation protein A TM1040_1941 2045789 - 2044881 - | hypothetical protein TM1040_1942 2047008 - 2045848 - | signal recognition particle-docking protein FtsY TM1040_1943 2047735 - 2047082 - | YhhN-like TM1040_1944 2047873 - 2048283 + | hypothetical protein TERM 2132 2048313 - 2048297 - T 81 -13.7 -3.28924 | opp_overlap 2048288 2048287, overlap 2048301 GAGGCCCGCGCAGAA GCGAGGC GCT GCCTCGC GCTCCGGGATATTTT TM1040_1945 2049860 - 2048352 - | exodeoxyribonuclease VII large subunit TERM 2133 2049482 - 2049492 + g 71 -8.2 -4.07568 | CTTCAGCGGCCAGTT GCGC CTT GCGC TTTTCCAAGAGCGCC TERM 2134 2051073 - 2051042 - g 85 -6.6 -4.77157 | gap 1, opp_overlap 2051052 GGAAGCTATGAAAAA GGCAGCGAGATCAAG GGC CTTGATG-CTCTGCC CGAAGACAGCATGAA TM1040_1946 2050013 - 2051275 + | phosphoribosylamine--glycine ligase TM1040_1948 2052543 - 2051746 - | integrins alpha chain TERM 2135 2052537 - 2052492 - G 76 -12.6 -3.28712 | gap 2, opp_overlap 2052505 2052533 2052534 2052536, overlap 2052493 CCGCGCGGCGTAGAA TC-GGGGGCAACACGC-GCGCC CGAA GCCGCCGCGCTTTGCCCCCAGA TCCCATCAGATCTGC TERM 2136 2052535 - 2052493 - G 72 -14.1 -2.57132 | gap 1, opp_overlap 2052505 2052533 2052534, overlap 2052492 CGCGCGGCGTAGAAT CGGGGGCAACACGC-GCGCC CGAA GCCGCCGCGCTTTGCCCCCA GATCCCATCAGATCT TM1040_1949 2052935 - 2052543 - | ferredoxin TERM 2137 2053424 - 2053441 + G 70 -4.7 -4.56597 | opp_overlap 2053408 2053435, overlap 2053425 2053426 CGGGCACCGATGGCA ATGCCGG CAAA CCGGCGG TTTTTGCCACCGAAA TERM 2138 2053670 - 2053707 + G 78 -14.1 -3.13164 | gap 1 GCGACACGCTTTCGC TGCAGGCCGCGCGCAGCC TGG GGCTGAGCGCCGTC-GCA TTGGATGATTAAAAC TM1040_1950 2053273 - 2053719 + | peptidoglycan binding domain-containing protein TERM 2139 2053967 - 2053989 + G 78 -10.4 -3.90586 | CGATGTGCTCTTTGA GCGCGGCGAC GAG GGCGACGCGC TTTATGCGATCATCT TM1040_1951 2053848 - 2054516 + | Crp/FNR family transcriptional regulator TERM 2140 2055070 - 2055088 + F 71 -6.6 -4.24002 | overlap 2055071 CCCGAACGCGCCTTC ACGCAGCC GGT GGTTGCGG TTTTGCCCTTTCGCG TM1040_1952 2055091 - 2056218 + | tetratricopeptide TPR_2 TERM 2141 2056466 - 2056494 + T 100 -15.4 -4.4261 | CGTCCGTCCCATCGA GAGCCATGTGTC CGCCC GACGCATGGCTC TTTTGGTATTGCGAG TERM 2142 2056537 - 2056566 + T 79 -9.1 -4.22554 | opp_overlap 2056540, overlap 2056539 2056540 TGCTGTCTTTCAAGA AAACGGCCGACCC CTTG GGGCCGGCCGGTC TTGTTTCTTAGATGC TERM 2143 2056539 - 2056564 + T 77 -11.7 -3.70444 | opp_overlap 2056540, overlap 2056537 2056540 CTGTCTTTCAAGAAA ACGGCCGACCC CTTG GGGCCGGCCGG TCTTGTTTCTTAGAT TERM 2144 2056540 - 2056563 + T 81 -15.2 -2.81182 | opp_overlap 2056540, overlap 2056539 2056537 TGTCTTTCAAGAAAA CGGCCGACCC CTTG GGGCCGGCCG GTCTTGTTTCTTAGA TERM 2145 2056563 - 2056540 - T 100 -17.4 -4.63218 | opp_overlap 2056540 2056539 2056537 TGTCTTTCAAGAAAA CGGCCGACCC CTTG GGGCCGGCCG GTCTTGTTTCTTAGA TM1040_1953 2058115 - 2056616 - | peptidase S1C, Do TERM 2146 2058955 - 2058973 + G 78 -3 -5.1101 | overlap 2058933 CTGAGGATCGCAAGA GCTGGCTG ATC TACCCGGC TTTTTTGCCTGCTCA TM1040_1954 2058558 - 2059079 + | hypothetical protein TERM 2147 2059172 - 2059135 - T 87 -17.1 -2.87344 | opp_overlap 2059144, overlap 2059144 GATGTGCGCCAGAGA CACAAAAAAGGCCGCCC AACT GGGCGGCCTTTTCAATG CTTTATGCCAAGCAG TERM 2148 2059163 - 2059144 - T 100 -16.4 -5.4492 | opp_overlap 2059144, overlap 2059135 CAGAGACACAAAAAA GGCCGCCC AACT GGGCGGCC TTTTCAATGCTTTAT TERM 2149 2059144 - 2059163 + T 100 -16.4 -4.26681 | opp_overlap 2059144 2059135 CAGAGACACAAAAAA GGCCGCCC AACT GGGCGGCC TTTTCAATGCTTTAT TM1040_1955 2060073 - 2059189 - | HflC protein TM1040_1956 2061236 - 2060073 - | HflK protein TM1040_1957 2062700 - 2061345 - | NADPH-glutathione reductase TM1040_1958 2063478 - 2062849 - | hypothetical protein TERM 2150 2063371 - 2063337 - G 71 -7.8 -4.10144 | GCAATAGAAGAAGAA TGCCCCAATTGGGAAC TTT GTCCCTCATCGGGACA TCTGCGGTGGGTGAC TM1040_1959 2063653 - 2064093 + | transmembrane pair TM1040_1960 2064946 - 2064158 - | ribose-5-phosphate isomerase TERM 2151 2065052 - 2065095 + H 100 -20.2 -3.53012 | overlap 2065055 CGCGCGAGGGGCGAT CTGCGTGCGCCGCGCTTGCC GCTC GGCAAGCGCGGCGCCGGTCG TTTCGGGGAACCCGA TERM 2152 2065055 - 2065092 + H 100 -22.7 -2.90496 | overlap 2065052 GCGAGGGGCGATCTG CGTGCGCCGCGCTTGCC GCTC GGCAAGCGCGGCGCCGG TCGTTTCGGGGAACC TERM 2153 2065555 - 2065515 - g 81 -14 -3.40403 | gap 2, opp_overlap 2065513, overlap 2065483 GCTGGCGGACCAGAA CGCCGCGCTGGCCCCGCAGC CCG GCTCCGC--CCAGCGCGGCG CGTTCCTGACCTGGC TM1040_1961 2065279 - 2065986 + | glutathione S-transferase-like TERM 2154 2066830 - 2066820 - g 77 -8.2 -4.3534 | CGTGAACGAGGAAAA CGCC GCA GGCG GACAGGTCGTGACGG TERM 2155 2067224 - 2067245 + G 71 -5.7 -4.38712 | overlap 2067225 CGGCAGCGTCCCTGG CGCTGCGCG GCGA CGGGCAGCA TTTTGTGCCGCTGGA TM1040_1962 2065987 - 2067360 + | L-serine ammonia-lyase / 2-hydroxymethylglutarate dehydratase TM1040_1963 2067986 - 2067414 - | TetR family transcriptional regulator TM1040_1964 2068068 - 2068943 + | hypothetical protein TM1040_1965 2069025 - 2069999 + | hypothetical protein TM1040_1966 2070636 - 2069965 - | thiamine pyrophosphokinase TERM 2156 2072403 - 2072348 - g 70 -13 -2.85712 | overlap 2072345 GGAGACCTATAACCA GCTGCGCGCAGCGGTCGCCGCGGCCC AGGC GGACCCGGGCGACTCCGACGAGCAGC GCCGTGAAGCCCGCA TERM 2157 2072775 - 2072797 + G 72 -13.4 -2.56596 | overlap 2072771 ATGAGCTTTGTCGAA GGCCGCGAGA GCT TCTCGCGCCC TCAGTTGATCAACAA TERM 2158 2072918 - 2072904 - g 71 -5.6 -4.29326 | opp_overlap 2072904, overlap 2072896 GGGAAACTGAAGAAA GCCTCC AAC GGACGC TTTTCGGTCTCCTCG TM1040_1967 2070774 - 2072972 + | putative CheA signal transduction histidine kinases TERM 2159 2073009 - 2073028 + T 86 -9.2 -4.70659 | opp_overlap 2073009 GTGAGATTCCTAAGA CGCCGTCC CCAG GGGCGGTG TTTTTGCATGTGCCC TERM 2160 2073211 - 2073168 - T 100 -26 -3.57144 | gap 1, opp_overlap 2073206, overlap 2073172 TGGGCTAGGGCCAAA GCGACCGGCGCCGCGCT-CCC TGC GGGTAGCGCGGCGCCGGGCCC AAGCGATGGATAGGT TERM 2161 2073207 - 2073172 - T 100 -28.4 -2.64803 | gap 1, opp_overlap 2073206, overlap 2073168 CTAGGGCCAAAGCGA CCGGCGCCGCGCT-CCC TGC GGGTAGCGCGGCGCCGG GCCCAAGCGATGGAT TERM 2162 2073349 - 2073375 + T 72 -10.9 -3.53343 | ATGTTCGTCGTACAG GGCGTTGGG ATCTTTCTG CCCAACGCC TTTGAAAACAAACTT TM1040_1968 2073570 - 2073325 - | hypothetical protein TM1040_1969 2074883 - 2073570 - | adenylosuccinate synthetase TERM 2163 2073936 - 2073961 + g 72 -11.1 -3.40522 | gap 1, opp_overlap 2073936 GAGGCAGGCGTCAAA CCAGCCG-CAGC GGC GCTGACGGCCGG TTGTGGTGCCAAACT TERM 2164 2073961 - 2073936 - G 86 -13.3 -3.55761 | gap 1, opp_overlap 2073936 GAGGCAGGCGTCAAA CCAGCCG-CAGC GGC GCTGACGGCCGG TTGTGGTGCCAAACT TM1040_1970 2075515 - 2075153 - | hypothetical protein TERM 2165 2075395 - 2075367 - G 74 -3.1 -4.83169 | opp_overlap 2075380 AGTGCGGCAGAAAAA CGCTCCACCCA CTCGGGC CAGGTAAAGCG CCCGCTTTCATTGAG TM1040_1971 2076216 - 2075512 - | nitrile hydratase TERM 2166 2075807 - 2075783 - G 71 -5.5 -4.36914 | CGCGTGCGCACAAAA TCCCCGGGCTG ATA CTGCGCGGCGA CCGGACTTTTGCGAT TM1040_1972 2076839 - 2076213 - | nitrile hydratase, alpha subunit TM1040_1973 2077611 - 2079254 + | CTP synthetase TERM 2167 2079306 - 2079279 - f 100 -13.4 -5.11613 | gap 1, opp_overlap 2079280, overlap 2079280 ATATCACCCAAAAAA TCAGGCGCGTCCC TCG GGG-CGCGCCTGT TTCGTTAGCAATTTA TERM 2168 2079280 - 2079305 + F 100 -18.3 -3.922 | opp_overlap 2079279 2079280 TATCACCCAAAAAAT CAGGCGCGTCC CTCG GGGCGCGCCTG TTTCGTTAGCAATTT TERM 2169 2079305 - 2079280 - f 95 -16.9 -3.65883 | gap 1, opp_overlap 2079280, overlap 2079279 TATCACCCAAAAAAT CAGGCGCGTCCC TCG GGG-CGCGCCTG TTTCGTTAGCAATTT TERM 2170 2079679 - 2079663 - g 73 -9.3 -3.91897 | overlap 2079647 TGCGGCAGCGAGAAA GCCGCAC GCT GGGCGGC AATGGATGCGCGTTA TM1040_1974 2079396 - 2079827 + | hypothetical protein TERM 2171 2079875 - 2079829 - f 75 -11.5 -3.53012 | gap 1, opp_overlap 2079861, overlap 2079833 CTCTGGCCGCCTAAA GCCACGCCATGCCC-CTCAGCC CGCG GGCGGAATGGGCTTGGCGCAAC CCCATAGTTGCGCTA TERM 2172 2079871 - 2079833 - f 73 -13.1 -2.64155 | gap 1, opp_overlap 2079861, overlap 2079829 GGCCGCCTAAAGCCA CGCCATGCCC-CTCAGCC CGCG GGCGGAATGGGCTTGGCG CAACCCCATAGTTGC TM1040_1975 2079901 - 2080233 + | hypothetical protein TM1040_1976 2080346 - 2081248 + | fructose-1,6-bisphosphate aldolase TERM 2173 2081269 - 2081300 + T 88 -15.2 -3.53018 | opp_overlap 2081267 2081274, overlap 2081274 GAGCCTGAAAGAAGC GCAAAGGCCGCAGT TTTT GCTGCGGCCTTTTC TGTTTCATATCTAAC TERM 2174 2081295 - 2081274 - T 85 -13 -3.74238 | opp_overlap 2081269 2081274, overlap 2081267 TGAAAGAAGCGCAAA GGCCGCAG TTTTTG CTGCGGCC TTTTCTGTTTCATAT TERM 2175 2081274 - 2081295 + T 100 -13.7 -4.83032 | opp_overlap 2081274 2081267, overlap 2081269 TGAAAGAAGCGCAAA GGCCGCAGT TTTT GCTGCGGCC TTTTCTGTTTCATAT TM1040_1977 2082778 - 2081321 - | methyl-accepting chemotaxis sensory transducer TERM 2176 2082001 - 2082015 + g 80 -11.4 -3.75665 | TGACAGTGATCTCCT CCACCG CCG CGGTGG TTTCCTCAAGTGTCG TERM 2177 2082643 - 2082623 - G 77 -3.2 -5.00616 | gap 1 TTCGGTCTTAAAAAA CGCG-GCCA TCTC CGGCTCACG TCCGACGCGGTCATA TM1040_1978 2082931 - 2083242 + | hypothetical protein TM1040_1979 2083919 - 2083197 - | fatty acid hydroxylase TERM 2178 2083958 - 2083992 + r 90 -12.1 -4.28254 | overlap 2083949 2083959 TGCTTTGCCCGGGGG CCGCGCGCTGGTCTT ATTTG AAGACGGGCGCGCGC TTTTGCATATTGGCC TERM 2179 2083959 - 2083991 + r 85 -15.6 -3.1647 | overlap 2083949 2083958 GCTTTGCCCGGGGGC CGCGCGCTGGTCTT ATTTG AAGACGGGCGCGCG CTTTTGCATATTGGC TM1040_1980 2084768 - 2083971 - | enoyl-CoA hydratase TM1040_1981 2084941 - 2086053 + | histidinol-phosphate aminotransferase TM1040_1982 2086159 - 2086395 + | hypothetical protein TM1040_1983 2087843 - 2086629 - | aminotransferase, class V TM1040_1984 2088076 - 2089935 + | ABC transporter related TM1040_1985 2090043 - 2090789 + | glycine cleavage T protein (aminomethyl transferase) TERM 2180 2091196 - 2091216 + G 82 -9 -4.32857 | overlap 2091184 CATCGCCCCCTCATT GGCAATGC GCAGG GCGTTGCC TTTGTCTTTGACCGG TERM 2181 2091406 - 2091420 + G 74 -11.4 -3.53563 | opp_overlap 2091394 ACAGAGGCTTATGTT GCCTCG ATG CGAGGC TTTACCGCGGCCTAT TM1040_1986 2090902 - 2091483 + | hypothetical protein TERM 2182 2091619 - 2091594 - T 100 -16.1 -4.72272 | opp_overlap 2091594 CCTGCGCACGAAAAA GCCCCGCGCCA TCTA TGGAGCGGGGC TTTGTCAGGTCTGGT TERM 2183 2091594 - 2091619 + T 100 -16.1 -3.91412 | opp_overlap 2091594 CCTGCGCACGAAAAA GCCCCGCGCCA TCTA TGGAGCGGGGC TTTGTCAGGTCTGGT TM1040_1987 2092220 - 2091657 - | elongation factor P TM1040_1988 2092447 - 2092764 + | hypothetical protein TERM 2184 2092792 - 2092821 + F 100 -15.1 -4.59853 | opp_overlap 2092797 2092798, overlap 2092798 2092809 CTGCCAAGCTTTAGA GAAAAGCGCGTCC TGGG GGGCGCGTTTTTC TTTTTGCGCCCTTCC TERM 2185 2092816 - 2092797 - f 71 -4.8 -4.53705 | opp_overlap 2092792 2092798 2092809, overlap 2092798 AAGCTTTAGAGAAAA GCGCGTCC TGGG GGGCGCGT TTTTCTTTTTGCGCC TERM 2186 2092798 - 2092815 + F 100 -10.5 -5.61881 | opp_overlap 2092798 2092797, overlap 2092792 2092809 AGCTTTAGAGAAAAG CGCGTCC TGGG GGGCGCG TTTTTCTTTTTGCGC TERM 2187 2093256 - 2093277 + G 78 -10.1 -3.85698 | gap 1 GCAGGGCAAGCGGCG CGGCACCCGC GCG GCGGG-GTCG TTTATGCGCGACAAG TERM 2188 2093566 - 2093578 + G 70 -3.3 -4.72272 | GTCAATCGCTTCCGG GGCGA CCT TAGCC TTTTTGATGGCGGGC TM1040_1989 2092984 - 2094432 + | cobyric acid synthase TM1040_1990 2096077 - 2094770 - | hypothetical protein TERM 2189 2095764 - 2095782 + g 81 -4.4 -5.00616 | overlap 2095741 GTGTCGTAGGCGGGG GCACGGTG CAA CACCCGGC TTTTTTCAGCAGAGG TM1040_1991 2097575 - 2096154 - | Type I secretion outer membrane protein, TolC TERM 2190 2096475 - 2096452 - G 76 -8.8 -4.08767 | gap 1, opp_overlap 2096452 CGGATCCCGTCAAAA GCGACCTGCGC TGC GCGCACG-CGC TGGTTCGAGGACACA TERM 2191 2096873 - 2096849 - G 77 -11.3 -3.59979 | opp_overlap 2096872, overlap 2096850 CCTGTGCATCCGAAA GCGATGCCGCG CGG CGCGGCAACGG CGGATAGGACGCCAC TERM 2192 2096872 - 2096850 - G 77 -14.8 -2.75844 | overlap 2096849 CTGTGCATCCGAAAG CGATGCCGCG CGG CGCGGCAACG GCGGATAGGACGCCA TM1040_1992 2098373 - 2097720 - | protein-L-isoaspartate(D-aspartate) O-methyltransferase TERM 2193 2098239 - 2098262 + g 70 -4.4 -4.56775 | overlap 2098240 ATCGGCATAGGCCAC CTCGGCCTGG GAAT CCGGGACGAA TTTTTCGCGCGAAAT TM1040_1993 2099207 - 2098899 - | TraR/DksA family transcriptional regulator TERM 2194 2099323 - 2099278 - H 73 -8.1 -4.10161 | gap 1, overlap 2099279 GATCACCGGCCAAAA GCGGGACGCGCTCCAAGCGGGC GGC GCCCTCTCGGA-CGCGCGGCGA AACAAGGGGTCTGGT TERM 2195 2099322 - 2099279 - H 71 -11.6 -3.05775 | gap 1, overlap 2099278 ATCACCGGCCAAAAG CGGGACGCGCTCCAAGCGGGC GGC GCCCTCTCGGA-CGCGCGGCG AAACAAGGGGTCTGG TERM 2196 2099441 - 2099471 + H 73 -5.4 -4.59853 | gap 1, overlap 2099438 ATGTGCACCCTGGTC GCGCGAGGTCGCG CCGCTT TG-GGCCTTGCGC TTTTTGCCAACTTCG TM1040_1994 2099466 - 2099696 + | entericidin EcnAB TM1040_1995 2100681 - 2099764 - | putative PAS/PAC sensor protein TERM 2197 2100413 - 2100438 + g 76 -6 -4.60041 | TGGTCCGATGCCGAA GGCACAGCGC TGAAAT GCGCCCTGCC TTTTTCAAGATAGCT TM1040_1996 2101094 - 2100825 - | hypothetical protein TM1040_1997 2101188 - 2102966 + | periplasmic sensor signal transduction histidine kinase TM1040_1998 2102968 - 2103390 + | response regulator receiver protein TERM 2198 2103546 - 2103524 - Tf 74 -12 -3.05384 | opp_overlap 2103521 CTTCGCGCCACCCAA GTCCGTGGCG CAG CACCACAGAC GCGTTTCAAAGACGG TERM 2199 2103867 - 2103830 - gT 71 -9.1 -3.81755 | gap 1, overlap 2103833 AGGCCTGAAAGAGAA CACCGCACGCGCCGTATC AGA GATGATGCGCGTGCG-TG ACCTTCAGGGCATGC TERM 2200 2103865 - 2103833 - gT 70 -11.9 -2.69057 | overlap 2103830 CCTGAAAGAGAACAC CGCACGCGCCGTATC AGA GATGATGCGCGTGCG TGACCTTCAGGGCAT TM1040_2000 2105762 - 2103846 - | twin-arginine translocation pathway signal TM1040_1999 2103528 - 2103923 + | hypothetical protein TERM 2201 2104723 - 2104741 + gF 72 -10.2 -3.4178 | TCCGAAAACAGTTTG GCCTGGCG CGG CGCGAGGC TTGTCATCCCGTAGT TERM 2202 2105292 - 2105315 + gF 91 -13.2 -3.74693 | gap 1 TCCGGGGGTGGTACG CGCCTCCACGG CTG CCGTG-AGGCG TTTCATGAAGTCCGC TM1040_2001 2106141 - 2106440 + | hypothetical protein TM1040_2002 2106428 - 2108020 + | methyl-accepting chemotaxis sensory transducer TERM 2203 2108118 - 2108083 - f 95 -19.2 -3.20723 | opp_overlap 2108090, overlap 2108090 TGTCCATCAAGCGAA TTCAAAAGAAGGGGCC AACA GGCCCCTTCTTTTGAT CTGCCCGTCCACTGC TERM 2204 2108111 - 2108090 - f 100 -15.9 -4.29845 | opp_overlap 2108090, overlap 2108083 CAAGCGAATTCAAAA GAAGGGGCC AACA GGCCCCTTC TTTTGATCTGCCCGT TERM 2205 2108090 - 2108111 + F 100 -15.9 -4.3467 | opp_overlap 2108083 2108090 CAAGCGAATTCAAAA GAAGGGGCC AACA GGCCCCTTC TTTTGATCTGCCCGT TERM 2206 2108492 - 2108470 - g 73 -4.6 -4.62302 | GAATACGTCGAAAAA GGCGCGCAGC CCG GCACCGGGCC CTTGGCGATCATGCG TM1040_2003 2108344 - 2109321 + | 6-phosphogluconate dehydrogenase, NAD-binding TERM 2207 2109394 - 2109373 - f 71 -7.9 -4.07568 | GCGCGTGTCTGAAAA CGTGCGGAG CCCT CCCGGCACG CCCTTCTAAAGTCCT TM1040_2004 2109545 - 2110426 + | LysR family transcriptional regulator TM1040_2005 2111313 - 2110423 - | LysR family transcriptional regulator TM1040_2006 2111425 - 2112573 + | gamma-butyrobetaine,2-oxoglutarate dioxygenase TM1040_2007 2112570 - 2113298 + | hypothetical protein TERM 2208 2113346 - 2113379 + T 100 -15.2 -4.09685 | opp_overlap 2113339 2113343 AAACTGAACGGAGCG CGCCTGCCCCGCCG CAATTT CTGCCGGGCAGGCG TTTTAACGAATGCCG TM1040_2008 2113961 - 2113464 - | HxlR family transcriptional regulator TERM 2209 2113538 - 2113520 - G 74 -12.4 -3.14344 | GACCGTCCTCATCAA GCAGCGCG ACG CGCACTGC ACCGGTCTTGCCCTT TM1040_2009 2114021 - 2114866 + | dienelactone hydrolase family protein TM1040_2010 2116049 - 2114985 - | histidine kinase TERM 2210 2116005 - 2116031 + g 71 -6.5 -4.1891 | opp_overlap 2116004 2116002 2116006, overlap 2116006 CTCTAGGACAAAGAC AGCCTGCTCCA CCTGA TCGAGCAGGCG TTTCTGTTCGAGAGA TERM 2211 2116273 - 2116243 - H 75 -11.1 -3.45023 | overlap 2116246 2116261 TGACCACTAGCAGAA GAACCGCTGGCGA GACCA TCGCCCGCGATCC GGCGACACTGACCTC TERM 2212 2116270 - 2116246 - H 71 -9.2 -3.85864 | overlap 2116243 2116261 CCACTAGCAGAAGAA CCGCTGGCGA GACCA TCGCCCGCGA TCCGGCGACACTGAC TM1040_2011 2116316 - 2116756 + | hypothetical protein TM1040_2012 2116783 - 2117112 + | hypothetical protein TM1040_2013 2117454 - 2117215 - | hypothetical protein TERM 2213 2117456 - 2117493 + H 95 -12.7 -4.54727 | overlap 2117458 GCAAGGCGGGTCAAG GCGGCGGGTTGATCAGT GGCA GCGGATCAACTCGCCCC TTTTGGTTTCAGGCC TERM 2214 2117458 - 2117491 + H 75 -13.9 -2.5893 | overlap 2117456 AAGGCGGGTCAAGGC GGCGGGTTGATCAGT GGCA GCGGATCAACTCGCC CCTTTTGGTTTCAGG TERM 2215 2117545 - 2117535 - H 73 -8.2 -4.11751 | overlap 2117525 AGGAACCGGGGAAAA CGCG GGA CGCG AGAAAGGGCGGCACA TM1040_2014 2117561 - 2118064 + | cell division protein MraZ TM1040_2015 2118068 - 2119057 + | methyltransferase TM1040_2016 2119057 - 2119404 + | hypothetical protein TM1040_2017 2119401 - 2121182 + | peptidoglycan glycosyltransferase murE 2121197 - 2122681 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 2216 2122868 - 2122852 - g 84 -9.3 -4.57073 | opp_overlap 2122853, overlap 2122853 CAGGCCCTGGAAAAA GGCGCCG GAG CGGCGCT GGTGTCGCATATCCC TERM 2217 2122867 - 2122853 - g 76 -12.8 -3.33922 | opp_overlap 2122853, overlap 2122852 AGGCCCTGGAAAAAG GCGCCG GAG CGGCGC TGGTGTCGCATATCC TERM 2218 2123625 - 2123637 + G 73 -10.5 -3.60296 | opp_overlap 2123623 2123624 GTCGCCGGTCAAAGG GCGCG GCG CGCGC TTTACCGTGGGGCTG TM1040_2019 2122678 - 2124069 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 2219 2124318 - 2124339 + G 74 -12.3 -3.17051 | gap 1, overlap 2124317 CATCTCGCGAAGGTC GGCACCCCCA CCA TGGGGG-GCC TGTTGATCGTCGGGG TERM 2220 2125117 - 2125104 - g 85 -3.8 -5.32882 | opp_overlap 2125115, overlap 2125105 CACTACGAGAAAAAA GGCT GGGCAG AGCC GACCATCGTGATCCG TM1040_2020 2124111 - 2125193 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 2221 2125206 - 2125235 + T 71 -7.2 -4.13246 | opp_overlap 2125198, overlap 2125209 TAACCCACGCTAATT CAG-CGCTTGCGGC CTGA GCTGCA-GCGTCTG TTTCTCTCTGAGCTA TERM 2222 2125252 - 2125287 + T 73 -8.2 -4.09685 | gap 1, opp_overlap 2125256, overlap 2125256 TTCTCTCTGAGCTAT G-AAAGCCGCGCGGGGG ACA CCTTGGCGCGGCTTCGC TTTTAAAGGATGACG TERM 2223 2125256 - 2125282 + T 81 -13.6 -3.36823 | opp_overlap 2125256, overlap 2125252 CTCTGAGCTATGAAA GCCGCGCGGGGG ACA CCTTGGCGCGGC TTCGCTTTTAAAGGA TERM 2224 2125282 - 2125256 - T 71 -9.2 -3.76224 | opp_overlap 2125256 2125252 CTCTGAGCTATGAAA GCCGCGCGGGGG ACA CCTTGGCGCGGC TTCGCTTTTAAAGGA TM1040_2021 2126579 - 2125506 - | hypothetical protein TERM 2225 2125597 - 2125542 - G 80 -3.2 -5.08824 | gap 2, opp_overlap 2125554 2125562, overlap 2125547 CTTGCACTGAAAAAA CGC-AA-CGCGGGACCGGACGCCGAT GTTGGG ATCGTCTTCAAGCCCCGCGACCAGCG TGTCCAATGTGTGCG TERM 2226 2125590 - 2125547 - G 74 -10.9 -3.52779 | opp_overlap 2125554 2125562, overlap 2125542 ACTGAAAAAACGCAA CGCGGGACCGGACGCCGAT GTTGGG ATCGTCTTCAAGCCCCGCG ACCAGCGTGTCCAAT TM1040_2022 2127684 - 2126599 - | putative Mrp (multidrug resistance-associated proteins) family protein TERM 2227 2127399 - 2127420 + g 85 -12.3 -3.72576 | CACCCAGCTTGAGGC TCGGCGCAG GTTT TTGCGCCGA TTTGGTCGGCGCAGC TM1040_2023 2128003 - 2128224 + | hypothetical protein TERM 2228 2128384 - 2128418 + T 81 -10.7 -4.07678 | opp_overlap 2128384, overlap 2128379 TGATGTGCAACAGAA CGGCGGTGCCC CCTCCTCCTCCCT GGGCGCCGCCG TTTCCTGTTTTAGGA TM1040_2024 2131208 - 2128764 - | ATP-dependent DNA helicase Rep TM1040_2025 2131376 - 2131885 + | BLUF domain-containing protein TM1040_2026 2132061 - 2133230 + | L-lactate dehydrogenase (cytochrome) TERM 2229 2133318 - 2133287 - T 100 -16.6 -4.56597 | gap 1, opp_overlap 2133288, overlap 2133288 2133291 GGTGCGCGCCAAAAA GCGAGGGCGCAGCCC TCT GGACCGCGCCCT-GC GTCTGTCCCCCCGGA TERM 2230 2133288 - 2133319 + T 71 -12.2 -2.87211 | gap 1, opp_overlap 2133287 2133288 2133291 GTGCGCGCCAAAAAG CG-AGGGCGCAGCCC TCT GGACCGCGCCCTGCG TCTGTCCCCCCGGAT TERM 2231 2133319 - 2133288 - T 90 -16.6 -3.33744 | gap 1, opp_overlap 2133288, overlap 2133287 2133291 GTGCGCGCCAAAAAG CG-AGGGCGCAGCCC TCT GGACCGCGCCCTGCG TCTGTCCCCCCGGAT TERM 2232 2133315 - 2133291 - T 87 -17.1 -2.83903 | opp_overlap 2133288, overlap 2133287 2133288 CGCGCCAAAAAGCGA GGGCGCAGCCC TCT GGACCGCGCCC TGCGTCTGTCCCCCC TM1040_2027 2133807 - 2133373 - | BLUF domain-containing protein TERM 2233 2134091 - 2134078 - H 79 -9.5 -4.07885 | GAGTGGCGGCTAAAA CCGGG AGGC CCCGG CCAAAGTTTCGCATT TERM 2234 2135754 - 2135736 - g 72 -11.6 -3.38046 | overlap 2135734 2135737 TGCCGACCTCAAAGA GCCGCGCG CGC CGCGCGCC GATACGGGCAACCTG TM1040_2028 2134246 - 2137686 + | pyruvate carboxylase TERM 2235 2137710 - 2137736 + F 100 -17.3 -4.98531 | opp_overlap 2137707 2137706 2137710 CCATGCTAAAATTCA GCCGCAGCTCC CCATC GGGGCTGCGGC TTTTTCATTTGGGGA TERM 2236 2137736 - 2137710 - f 82 -15.9 -2.75577 | gap 1, opp_overlap 2137710, overlap 2137707 2137706 CCATGCTAAAATTCA GCCGCAGCTCCC CATC GGG-GCTGCGGC TTTTTCATTTGGGGA TERM 2237 2138587 - 2138569 - g 74 -6 -4.56597 | overlap 2138570 TGGTCGGGCCAAAAA CCGACTTC GCA AAAGTCGA GCGTTTCACCAGAAA TM1040_2029 2137758 - 2138666 + | hypothetical protein TM1040_2030 2139152 - 2138667 - | hypothetical protein TERM 2238 2139559 - 2139527 - H 79 -14.2 -2.75844 | gap 1, opp_overlap 2139527 2139533 2139547, overlap 2139533 CGCTCCATTCGAAAT CGAAAAGGCCGCGCC TCCG GGTGCGGCC-TTTCG CTTTGTGGCCCGCCG TERM 2239 2139527 - 2139559 + H 87 -16.4 -2.91276 | gap 1, opp_overlap 2139527 2139533, overlap 2139533 2139547 CGCTCCATTCGAAAT CGAAAAGGCCGCGCC TCCG GGTGCGGCCTTT-CG CTTTGTGGCCCGCCG TERM 2240 2139554 - 2139533 - H 95 -12.9 -4.35926 | opp_overlap 2139527 2139533 2139547, overlap 2139527 ATTCGAAATCGAAAA GGCCGCGCC TCCG GGTGCGGCC TTTCGCTTTGTGGCC TERM 2241 2139533 - 2139554 + H 95 -15.1 -3.89215 | opp_overlap 2139533 2139527, overlap 2139527 2139547 ATTCGAAATCGAAAA GGCCGCGCC TCCG GGTGCGGCC TTTCGCTTTGTGGCC TERM 2242 2139792 - 2139826 + H 91 -12.9 -4.13767 | gap 1, opp_overlap 2139793 2139799, overlap 2139793 2139799 CCGCTCCATTCGAAA TCGAAAAGGCCGCGCC GCCG GGTGCGGCCTTT-CGC TTTTCCACTCCCCAC TERM 2243 2139825 - 2139793 - H 79 -14.2 -2.75844 | gap 1, opp_overlap 2139792 2139793 2139799, overlap 2139799 CGCTCCATTCGAAAT CGAAAAGGCCGCGCC GCCG GGTGCGGCC-TTTCG CTTTTCCACTCCCCA TERM 2244 2139793 - 2139825 + H 88 -16.4 -3.08046 | gap 1, opp_overlap 2139793 2139799, overlap 2139792 2139799 CGCTCCATTCGAAAT CGAAAAGGCCGCGCC GCCG GGTGCGGCCTTT-CG CTTTTCCACTCCCCA TERM 2245 2139820 - 2139799 - H 95 -12.9 -4.35926 | opp_overlap 2139799 2139793 2139792, overlap 2139793 ATTCGAAATCGAAAA GGCCGCGCC GCCG GGTGCGGCC TTTCGCTTTTCCACT TERM 2246 2139799 - 2139820 + H 95 -15.1 -3.93061 | opp_overlap 2139793 2139799, overlap 2139793 2139792 ATTCGAAATCGAAAA GGCCGCGCC GCCG GGTGCGGCC TTTCGCTTTTCCACT TERM 2247 2139866 - 2139884 + H 74 -3 -5.00616 | overlap 2139867 TCGGTGCCCCCCCAC CGACCACT CGG AGTGGACA TTTTTTAGAGCAACG TERM 2248 2140078 - 2140046 - H 79 -14.2 -2.75844 | gap 1, opp_overlap 2140036 2140052, overlap 2140052 CGCTCCATTCGAAAT CGAAAAGGCCGTGCC TTCG GGCGCGGCC-TTTCG CGTTTCAGAGCCTTT TERM 2249 2140052 - 2140073 + H 95 -15.1 -3.71649 | opp_overlap 2140052 2140046, overlap 2140036 ATTCGAAATCGAAAA GGCCGTGCC TTCG GGCGCGGCC TTTCGCGTTTCAGAG TERM 2250 2140073 - 2140052 - H 95 -12.9 -4.35926 | opp_overlap 2140036 2140052, overlap 2140046 ATTCGAAATCGAAAA GGCCGTGCC TTCG GGCGCGGCC TTTCGCGTTTCAGAG TM1040_2031 2140200 - 2141552 + | aminotransferase TERM 2251 2141593 - 2141560 - T 95 -13.3 -4.19258 | gap 1, opp_overlap 2141560 2141565, overlap 2141565 ACAGCTGATCCAAAA CAAAAGGCGCCGCGAT CGA ATCG-GGCGCCTTTTC ATCTTCTTACAAATA TERM 2252 2141560 - 2141593 + T 75 -13.3 -2.63549 | gap 1, opp_overlap 2141560 2141565, overlap 2141565 ACAGCTGATCCAAAA CAAAAGGCGCCGCGAT CGA ATCG-GGCGCCTTTTC ATCTTCTTACAAATA TERM 2253 2141565 - 2141588 + T 95 -13.2 -4.49937 | gap 1, opp_overlap 2141565 2141560, overlap 2141560 TGATCCAAAACAAAA GGCGCCGCGAT CGA ATCG-GGCGCC TTTTCATCTTCTTAC TERM 2254 2141588 - 2141565 - T 100 -13.2 -5.10933 | gap 1, opp_overlap 2141560 2141565, overlap 2141560 TGATCCAAAACAAAA GGCGCCGCGAT CGA ATCG-GGCGCC TTTTCATCTTCTTAC TM1040_2032 2141938 - 2141699 - | AsnC family transcriptional regulator TERM 2255 2142530 - 2142547 + G 70 -9.9 -3.54424 | opp_overlap 2142513 2142533, overlap 2142533 GGCAGCTTTGACACC GAACTCG TCCG CGAGTTC TTTCAGGCGCTGGCG hisB 2142137 - 2142724 + | imidazoleglycerol-phosphate dehydratase hisH 2142831 - 2143469 + | imidazole glycerol phosphate synthase subunit HisH TERM 2256 2143533 - 2143516 - T 81 -14.1 -3.06831 | opp_overlap 2143512 CTAATCTGGACGCAA GCCGCCC CTTG GGGCGGC ACGCGCAAGAGGCGA TERM 2257 2143574 - 2143612 + T 100 -36.1 -3.61654 | GCGCGCCACCGGAAG CGCCGCGCGCCCGCCCC ATCGA GGGGCGGGCGCGCGGCG TTTGGCGTCGATGTC TM1040_2035 2144454 - 2143723 - | AraC family transcriptional regulator TM1040_2036 2144634 - 2145170 + | redoxin TERM 2258 2145286 - 2145245 - f 71 -8.7 -3.71848 | gap 1, opp_overlap 2145245 2145246, overlap 2145246 2145249 TCGCCTGACCAAGAA GGCATATGGGCCTGACCAGT TTT AC-GGTCAGGCCCACGCACT CTTGTACTTACGTTT TERM 2259 2145285 - 2145246 - f 71 -12.2 -2.82895 | gap 1, opp_overlap 2145246 2145245, overlap 2145245 2145249 CGCCTGACCAAGAAG GCATATGGGCCTGACCAGT TTT AC-GGTCAGGCCCACGCAC TCTTGTACTTACGTT TERM 2260 2145282 - 2145249 - f 73 -12.5 -2.67428 | gap 1, opp_overlap 2145246 2145245, overlap 2145246 2145245 CTGACCAAGAAGGCA TATGGGCCTGACCAGT TTT AC-GGTCAGGCCCACG CACTCTTGTACTTAC TM1040_2037 2145288 - 2145539 + | hypothetical protein TM1040_2038 2145979 - 2145590 - | hypothetical protein TM1040_2039 2146291 - 2147013 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 2261 2147121 - 2147087 - f 70 -11.5 -2.9914 | gap 2, opp_overlap 2147118, overlap 2147118 GACCGCTGAGAGAGA GGGGTTTCGCTTCGGGC TTC GCCCGAAGCGA--CCGC GGTGGCGCGTGTCCA TERM 2262 2147156 - 2147118 - f 100 -30.4 -2.52464 | opp_overlap 2147118, overlap 2147087 CTTCGCCCGAAGCGA CCGCGGTGGCGCGTGTCC ATT GGACACGCGCCACCGCGC CCGGCCCAACGCCAA TM1040_2040 2147329 - 2147820 + | hypothetical protein TM1040_2041 2147963 - 2148724 + | imidazole glycerol phosphate synthase subunit HisF hisE 2148721 - 2149038 + | phosphoribosyl-ATP pyrophosphatase TM1040_2043 2150258 - 2149095 - | hypothetical protein TERM 2263 2150375 - 2150335 - R 77 -13.9 -3.01924 | gap 1, opp_overlap 2150336 2150336 TAGCGGTCCGCAAGA GCGCCCCGACGCGCCGGG ACACGG CCCGGCGCAACG-GGTGC AGTTCTATCAAAACC TERM 2264 2150336 - 2150377 + r 75 -11.5 -3.48276 | gap 2, opp_overlap 2150335, overlap 2150336 AGCGGTCCGCAAGAG C-GC-CCCGACGCGCCGGG ACACGG CCCGGCGCAACGGGTGCAG TTCTATCAAAACCGA TERM 2265 2150405 - 2150389 - R 83 -10.1 -4.26076 | overlap 2150393 GCAGTTCTATCAAAA CCGAGGG CGG CCCTCAG CCCCGACCGCGATAG TM1040_2044 2150866 - 2150402 - | 7-cyano-7-deazaguanine reductase TM1040_2045 2151590 - 2150883 - | radical SAM family protein TM1040_2046 2151940 - 2151587 - | putative 6-pyruvoyl tetrahydropterin synthase TM1040_2047 2152641 - 2151940 - | ExsB TM1040_2048 2152684 - 2152923 + | hypothetical protein TERM 2266 2153229 - 2153211 - g 72 -2.2 -4.7416 | opp_overlap 2153224, overlap 2153204 GGAAAAGGCCAAAAA GGCGGCGG CAT CCGAGACC GTCTGGCTCTTTGGT TERM 2267 2153845 - 2153831 - g 90 -5.6 -5.24129 | GTCTGCGACAAAAAA CCAAGG AAA CCGTGG ACAAGCTTGTCAAAA TM1040_2049 2153152 - 2153940 + | RNA methyltransferase TrmH, group 3 TERM 2268 2154210 - 2154195 - g 70 -10.4 -3.52177 | GGTCAAAAAACCCAA GCCCGT CAAA ACGGGC AAACCGGGAAAGTCG TERM 2269 2154319 - 2154307 - g 80 -4.1 -5.11254 | opp_overlap 2154318 AAGAAGAAAAAGAAA TCCTC GTG GAAGA TGGTCTTTGACGTGA TM1040_2050 2154013 - 2154354 + | hypothetical protein TM1040_2051 2154527 - 2155009 + | hypothetical protein TERM 2270 2155171 - 2155198 + F 76 -5.6 -4.71061 | gap 1, opp_overlap 2155173, overlap 2155173 CCACCTAGTATCACA GA-CTATGGCGCT GGA ACCGCCGTAGATC TTTTTCACTGTCCCT TERM 2271 2155227 - 2155248 + F 100 -15.9 -5.55769 | CTCGTTCCACACCTT GCGCCCGAA GCCA TTCGGGCGC TTTTTTCTTGTCGAG TM1040_2052 2155337 - 2155801 + | CoA-binding TM1040_2053 2156439 - 2155876 - | 3-dehydroquinate dehydratase TERM 2272 2157320 - 2157303 - g 71 -8.3 -4.07885 | overlap 2157304 GAGTTTCCTGTAAAA CCGGCGC CCCT GCGCGGG AGGCAGCGGGCCGCT TERM 2273 2157771 - 2157748 - g 76 -13.8 -3.04792 | opp_overlap 2157760 GGATCATCCGCAACA GCCCGGTGCC CATC GGCACCGTGC CGATCTATCAGGCGC TERM 2274 2158480 - 2158520 + G 71 -8.8 -3.76125 | gap 1, opp_overlap 2158444, overlap 2158484 TGGCCAAGGGTCTGC CCG-GCGCGCAGCGGCGCG ATGA TGCGCTGAGCCGCGCGCGG TTTGAATTCCGCTGG TM1040_2054 2156958 - 2158784 + | thiamine biosynthesis protein ThiC TM1040_2055 2159724 - 2158951 - | hypothetical protein TM1040_2056 2160791 - 2159766 - | allophanate hydrolase subunit 2 TERM 2275 2159887 - 2159858 - G 72 -11.4 -3.37796 | gap 1 CCGGATCACGCACAA GCG-GCGTCAGCC GGGAG GGCAGACGCTCGC GCTCGGCGCGGGCCC TM1040_2057 2161558 - 2160788 - | allophanate hydrolase subunit 1 TERM 2276 2162491 - 2162504 + G 78 -5.2 -4.77036 | GCCCGCATGTCCTGC CCGC ACCAGA GCGG TTTTTCCTCGTCAGC TM1040_2058 2161695 - 2162609 + | LysR family transcriptional regulator TM1040_2059 2162703 - 2163857 + | Rieske (2Fe-2S) region TM1040_2060 2163854 - 2164123 + | hypothetical protein TM1040_2061 2165095 - 2164175 - | LysR family transcriptional regulator TM1040_2062 2165213 - 2165494 + | hypothetical protein TM1040_2063 2165626 - 2168046 + | FAD dependent oxidoreductase TM1040_2064 2169287 - 2168043 - | FAD dependent oxidoreductase TM1040_2065 2169740 - 2169390 - | endoribonuclease L-PSP TM1040_2066 2170804 - 2169776 - | histone deacetylase superfamily protein TERM 2277 2169882 - 2169865 - G 72 -2.5 -4.82901 | overlap 2169846 CTTCCTGCACAAAAA GCGTTGG AAGG CCGGCGC GGGCAATTGCCTCGC TM1040_2067 2172110 - 2170824 - | TRAP dicarboxylate transporter- DctM subunit TM1040_2068 2172678 - 2172115 - | hypothetical protein TERM 2278 2172747 - 2172718 - R 73 -12.9 -2.66216 | gap 1, overlap 2172717 TTTGAGGATCATAAG GTCACAGGCCCCGC AAA ACGGGGCCTGC-AC ATACTGAGATCAGGG TM1040_2069 2173767 - 2172766 - | TRAP dicarboxylate transporter- DctP subunit TM1040_2070 2174017 - 2175000 + | LysR family transcriptional regulator TM1040_2071 2175116 - 2176048 + | FMN adenylyltransferase / riboflavin kinase TM1040_2072 2176058 - 2176528 + | hypothetical protein TM1040_2073 2177414 - 2176578 - | alpha/beta hydrolase fold TM1040_2074 2178025 - 2177411 - | DSBA oxidoreductase TERM 2279 2177953 - 2177903 - G 77 -11.1 -3.62096 | gap 2, opp_overlap 2177917 2177918 CGCCATGATGTCAAA CGGCTTGTAGGTCACCGCAGCACCG TGG CGG-GCCGCGATTTCCT-CGAGCCG CTGCCCAGCCAGATA TERM 2280 2178533 - 2178563 + G 75 -8.2 -4.254 | TCGAGCGGGTTCTGA CCATGGATCTGCAC GCC GCTCAGATCCAGGG TTTCTTCGATATTCC TM1040_2075 2178130 - 2179152 + | ribose-phosphate pyrophosphokinase TERM 2281 2179175 - 2179198 + F 100 -14.6 -5.61596 | opp_overlap 2179175 CGGATTTCACCAAAA CACCCCGCGA GATG TCGTGGGGTG TTTTTTTGTGGGCGT TERM 2282 2179198 - 2179175 - f 90 -12.4 -4.26903 | opp_overlap 2179175 CGGATTTCACCAAAA CACCCCGCGA GATG TCGTGGGGTG TTTTTTTGTGGGCGT TERM 2283 2179502 - 2179520 + F 76 -3.8 -5.00616 | GAAACAGATATCGTG CGGTTCGA TGC TCAAATCG TTTTTTCAACAGAGA TERM 2284 2180729 - 2180714 - g 70 -3.2 -4.62069 | opp_overlap 2180724 TCCCTATGCGAAAAA GGCG TGTTGGTG CGCC GTTGGCGTCAGTCTT TM1040_2076 2179542 - 2180870 + | dTDP-4-dehydrorhamnose reductase TM1040_2077 2180867 - 2181340 + | hypothetical protein TERM 2285 2181707 - 2181726 + G 83 -2.9 -5.24129 | gap 1, overlap 2181707 2181708 TGCGCACAGAGCCGA T-CGCCAA TGTGT TTGGCGCA TTTTTTGTGGGGCCC TM1040_2078 2181427 - 2182290 + | hypothetical protein TM1040_2079 2183846 - 2182353 - | hypothetical protein TERM 2286 2183435 - 2183445 + g 70 -4.6 -4.45168 | GGTTCAGAAACACCG GGCG GAC CGTC TTTGTCTTTTCGGGG TM1040_2080 2186429 - 2183985 - | heavy metal translocating P-type ATPase TM1040_2081 2186947 - 2186594 - | MerR family transcriptional regulator TM1040_2082 2187014 - 2187454 + | hypothetical protein TM1040_2083 2188334 - 2187810 - | hypothetical protein TERM 2287 2188205 - 2188163 - G 77 -7.6 -4.34789 | overlap 2188177 CAACCCATAAAACAA GCGACATCTGTAAACGCGCC ACA GAGGCATCCCCAGAGGTCGC GGCAGCACCGCTCAG TM1040_2084 2188700 - 2188344 - | hypothetical protein TERM 2288 2188794 - 2188771 - R 100 -19.6 -5.42605 | opp_overlap 2188771 TTAACAAAAAGAAAA CCGGCCCGCA GATC TGCGGGCCGG TTTCTATAGGTTTCA TERM 2289 2188771 - 2188794 + r 100 -19.6 -4.11295 | opp_overlap 2188771 TTAACAAAAAGAAAA CCGGCCCGCA GATC TGCGGGCCGG TTTCTATAGGTTTCA TM1040_2085 2189238 - 2188825 - | F0F1 ATP synthase subunit epsilon TM1040_2086 2190674 - 2189250 - | F0F1 ATP synthase subunit beta TERM 2290 2190616 - 2190596 - G 76 -8.9 -4.08216 | opp_overlap 2190607 TGAGGGCGTTCAAAA TCGCCGGCA GCT CGCCGTCGA ACTGGACGTCCACAA TM1040_2087 2191570 - 2190695 - | F0F1 ATP synthase subunit gamma TERM 2291 2190793 - 2190812 + g 72 -11.4 -3.35996 | gap 1 GCTTGTCGATCATTT CGCC-CGCG TTC CGCGTGGCG TTGTCCATCGCGCTC TM1040_2088 2193127 - 2191586 - | F0F1 ATP synthase subunit alpha TM1040_2089 2193781 - 2193128 - | ATP synthase F1, delta subunit TERM 2292 2193267 - 2193285 + g 71 -7.3 -4.14615 | overlap 2193263 ATGGTGACCTTCTTG CCCACGC GCTCG GCGAGGG TTTTGGCCAGTTTTT TERM 2293 2193428 - 2193412 - G 73 -10.8 -3.57406 | overlap 2193410 CGGGCACCACAAACA GGCGGC GTTTG GCCGCC ATCAGCGCGAGGGAG TM1040_2090 2194850 - 2194104 - | hypothetical protein TERM 2294 2195343 - 2195379 + G 74 -5.8 -4.56597 | gap 1, overlap 2195344 GCGCCGGCCCTGTTC AGCGCCGACAGCCTCAT GGTG ATG-GGCTGTGGACGCC TTTTTGAGGGCACGC TM1040_2091 2194905 - 2195720 + | hydroxyacylglutathione hydrolase TM1040_2092 2195880 - 2198258 + | ATP-dependent Clp protease ATP-binding subunit clpA TERM 2295 2198290 - 2198318 + T 95 -16.8 -3.65812 | gap 1, opp_overlap 2198288 2198279 CACAGCAAGATCACG CGCCCGCC-TCTG ACCT CAGACGGCGGGCG TTCTCTTACGCACGG TM1040_2093 2199066 - 2198470 - | hypothetical protein TM1040_2094 2199534 - 2199187 - | hypothetical protein TERM 2296 2199696 - 2199730 + r 81 -9.4 -4.48741 | gap 1, overlap 2199700 TTCCCATTTTCAGCA TGCAGGCTCTGGCAG GTCACA CTGCCGGAGCCT-TA TTTTATGGTGGATTA TERM 2297 2199700 - 2199727 + r 100 -14.9 -4.35042 | overlap 2199696 CATTTTCAGCATGCA GGCTCTGGCAG GTCACA CTGCCGGAGCC TTATTTTATGGTGGA TM1040_2095 2202122 - 2199768 - | hypothetical protein TERM 2298 2201874 - 2201839 - G 73 -13.2 -2.77523 | opp_overlap 2201866 2201867, overlap 2201834 2201841 GCGGCATCAAGATCA GAGCGCGTTGAGGACA GCGT CGCCCCCAGCGCGCCC AGTCGGGCCTGCAAC TERM 2299 2201872 - 2201841 - G 70 -12.2 -2.93348 | opp_overlap 2201866 2201867, overlap 2201839 2201834 GGCATCAAGATCAGA GCGCGTTGAGGACA GCGT CGCCCCCAGCGCGC CCAGTCGGGCCTGCA TM1040_2096 2203304 - 2202126 - | hypothetical protein TERM 2300 2202596 - 2202583 - G 70 -3.1 -4.72272 | overlap 2202584 TCGCCCGAGGAAAAA CTCAC ACGG GTGAA GGACGACAGCCATTC TERM 2301 2202886 - 2202875 - G 83 -3 -5.20606 | AAAGACCAAGAAAAA TCAA AAGG TTGA CGATATATCGCGTGA TM1040_2097 2203910 - 2203383 - | ChaC-like protein TM1040_2098 2203979 - 2204992 + | hypothetical protein TM1040_2099 2205927 - 2205061 - | extensin-like TM1040_2100 2206856 - 2205924 - | cyclohexadienyl dehydrogenase TERM 2302 2206724 - 2206766 + g 71 -9.7 -3.72576 | gap 1, opp_overlap 2206698 2206697, overlap 2206721 TGTCTCGGGTCTCCG CGCTGCGGGCGTAGCCGGTG ACTT CGCCTGCAAGGCCTGC-GCG TTTGATGGCCCAGAA TM1040_2101 2207941 - 2206853 - | histidinol-phosphate aminotransferase TM1040_2102 2208177 - 2207938 - | hypothetical protein TERM 2303 2208249 - 2208229 - R 80 -11.1 -3.85698 | overlap 2208244 2208245 CTGCCCCTCGATAAA GCCCCCGTT TCG AAAGGGGGC GTCGCGCGCCCTGAG TERM 2304 2208280 - 2208244 - R 82 -13.5 -3.53012 | opp_overlap 2208276, overlap 2208229 2208245 GCCCCCGTTTCGAAA GGGGGCGTCGCGCGCCC TGA GGGCGCGCGACGCGGGT CGCCTCGGGCAAAGC TERM 2305 2208279 - 2208245 - R 86 -17 -2.71712 | opp_overlap 2208276, overlap 2208229 2208244 CCCCCGTTTCGAAAG GGGGCGTCGCGCGCCC TGA GGGCGCGCGACGCGGG TCGCCTCGGGCAAAG TERM 2306 2208276 - 2208308 + r 75 -13.3 -2.64735 | opp_overlap 2208245 2208244 TGAGGGCGCGCGACG CGGGTCGCCTCGGGC AAA GCCCGAGGCGAAACA TCCTGTGCCTAGAAT TM1040_2103 2209778 - 2208354 - | aminotransferase, class V TM1040_2104 2209885 - 2210346 + | AsnC family transcriptional regulator TM1040_2105 2210859 - 2210392 - | GCN5-related N-acetyltransferase TERM 2307 2210913 - 2210886 - R 76 -6.8 -4.64598 | overlap 2210887 GAATTACGTGAAAAA TGAGGGGCGCAG ATCG CGGCGCACCTCC CCTGCCCCCTTTCGA TERM 2308 2210912 - 2210887 - R 72 -10.3 -3.38036 | overlap 2210886 AATTACGTGAAAAAT GAGGGGCGCAG ATCG CGGCGCACCTC CCCTGCCCCCTTTCG TM1040_2106 2211518 - 2210931 - | hypothetical protein TERM 2309 2211679 - 2211645 - R 95 -13.7 -4.40993 | gap 1, opp_overlap 2211653, overlap 2211653 GACAAATGACCAAAA TGCAAAAAGCCGCCCC AATC GGAGCGGC-TTTCGCA ATGTCTCTGCATGCG TERM 2310 2211672 - 2211653 - R 100 -12.8 -4.88222 | opp_overlap 2211653, overlap 2211645 ACCAAAATGCAAAAA GCCGCCCC AATC GGAGCGGC TTTCGCAATGTCTCT TERM 2311 2211653 - 2211672 + r 74 -10.6 -3.60502 | opp_overlap 2211645 2211653 ACCAAAATGCAAAAA GCCGCCCC AATC GGAGCGGC TTTCGCAATGTCTCT TERM 2312 2211685 - 2211712 + r 71 -12.1 -2.88433 | gap 1, opp_overlap 2211701, overlap 2211684 GGCTTTCGCAATGTC TCTGCATGCGCC CAAAC GGCGC-TGCAGA CTTAGTTTTTGGCGT rpsD 2212334 - 2211714 - | 30S ribosomal protein S4 TERM 2313 2212771 - 2212757 - R 79 -10 -4.04174 | TCGCACATAAGCAAA CCTGTG CGC CACAGG CGCCCCATTAGGCTG TM1040_2108 2213840 - 2212779 - | hypothetical protein TM1040_2109 2214914 - 2213973 - | hypothetical protein TM1040_2110 2215490 - 2215089 - | rhodanese-like protein TM1040_2111 2215682 - 2216980 + | L-pipecolate dehydrogenase TM1040_2112 2217839 - 2217033 - | IclR family transcriptional regulator TERM 2314 2217775 - 2217790 + g 73 -10.4 -3.5936 | GCAAGCGACATCGCT CCCTCG CGCG CGAGGG TTTCCAGAATTTCGA TERM 2315 2217847 - 2217865 + H 75 -8.8 -4.08064 | TTCAGCATATCTCGT CATGCCAC CCA GCGGCATG TTTTGCCAAAGGGTT TM1040_2113 2217848 - 2219566 + | sulfatase TERM 2316 2219598 - 2219574 - f 77 -11.3 -3.59698 | opp_overlap 2219569, overlap 2219575 CGACCTGAGACAGAA TGCGCCCGGTT CTG AGCCGGGCGCT CACAGTTTCAACCCA TERM 2317 2219597 - 2219575 - f 81 -14.8 -2.75498 | opp_overlap 2219569, overlap 2219574 GACCTGAGACAGAAT GCGCCCGGTT CTG AGCCGGGCGC TCACAGTTTCAACCC TERM 2318 2219989 - 2220011 + G 73 -10.6 -3.57263 | overlap 2219974 GGTCTCTTAGGGAGC CCTATCGTGA ATT TCACGATTGG TTTGGCAGTGAGGAT TERM 2319 2220604 - 2220579 - g 77 -11.1 -3.57263 | gap 1 AGTTGCACCGGCAAA CCCGTGGTC-GC CGT GCTGACCCCGGG CATCTACAACTCCGC TM1040_2114 2219895 - 2221355 + | hypothetical protein TM1040_2115 2221360 - 2222301 + | hypothetical protein TM1040_2116 2222305 - 2223102 + | transglutaminase-like TERM 2320 2223678 - 2223691 + G 75 -8.1 -4.23528 | opp_overlap 2223669 TCAAAGCCAACCTGT CGGTG GGAG CACCG TTTGATTTTCACTTC TERM 2321 2223839 - 2223808 - g 74 -5.8 -4.57569 | gap 1, opp_overlap 2223830 CGATGCGCTGAAAAA CGCGCTCGAGAGCCT GCC AGACT-TCGCGCTCG AGTGATCTGCCCGCC TM1040_2117 2223110 - 2223844 + | 20S proteasome, A and B subunits TM1040_2118 2225012 - 2223999 - | ribosomal large subunit pseudouridine synthase D TERM 2322 2225325 - 2225309 - g 80 -11.5 -3.70902 | TCCTCGACAGTGAAA CCGGCGC CCT GCGCCAG CAAATTCAGATCGAC TM1040_2119 2225035 - 2225343 + | hypothetical protein TERM 2323 2225370 - 2225395 + F 78 -13.3 -3.14132 | opp_overlap 2225365 2225364 GCGACCAAACCCGAC AGCTTTGCCGC CAGC GCGGCAAAGCA TTGATCCCGCACCAA TM1040_2120 2225676 - 2226056 + | hypothetical protein TERM 2324 2226082 - 2226100 + F 95 -13.1 -4.60797 | opp_overlap 2226070 2226080 ACAGCCGACGAGATC GCCGGGC CTTGC GCCCGGC TTTTCTGTGTCACGG TM1040_2121 2226311 - 2227423 + | putative CheA signal transduction histidine kinases TM1040_2122 2227973 - 2227506 - | hypothetical protein TERM 2325 2228395 - 2228417 + r 74 -7.6 -4.35116 | opp_overlap 2228396, overlap 2228396 CCCAAGATACTCAAA AGCCGCGC AAACTGG GCGCGGCC TTTTGGTGTCGGGTG TERM 2326 2228416 - 2228396 - R 89 -11.1 -4.28375 | opp_overlap 2228395 2228396 CCAAGATACTCAAAA GCCGCGC AAACTGG GCGCGGC CTTTTGGTGTCGGGT TERM 2327 2228396 - 2228416 + r 71 -11.1 -3.20588 | opp_overlap 2228396, overlap 2228395 CCAAGATACTCAAAA GCCGCGC AAACTGG GCGCGGC CTTTTGGTGTCGGGT TM1040_2123 2228779 - 2228459 - | hypothetical protein TERM 2328 2228734 - 2228748 + g 74 -7 -4.3467 | GAGCGGCCAGCACCA GCCCCC AAA GGGCGC TTTTGATGTAGAGCT TERM 2329 2228984 - 2228998 + G 76 -7 -4.46212 | opp_overlap 2228983, overlap 2228986 AGATATGAAGATCAC CCGCCG CAT CGGCCG TTTTCTGGTCAACCA TM1040_2124 2228973 - 2230523 + | adenylate/guanylate cyclase TERM 2330 2230597 - 2230573 - T 100 -16.4 -4.37198 | opp_overlap 2230573 AACCCAAATGCAAAA CGGCGCCCCC GCATG GGAGGCGCCG TTTCTGTTTTCCGTG TERM 2331 2230573 - 2230597 + T 100 -15 -4.46775 | gap 1, opp_overlap 2230573 AACCCAAATGCAAAA CGGCGCC-CCC GCAT GGGAGGCGCCG TTTCTGTTTTCCGTG TM1040_2125 2232287 - 2230638 - | choline/carnitine/betaine transport TM1040_2126 2232745 - 2232329 - | hypothetical protein TERM 2332 2232765 - 2232779 + r 78 -12.8 -3.33419 | overlap 2232762 CCTCCTGTTTCTTGC GGCCCC GAT GGGGCC TATTCGTTTCCGGGT TERM 2333 2232972 - 2232948 - R 100 -7.8 -5.7946 | opp_overlap 2232946 2232948 GTTTCAACAAAAAAA GGCGCAGGAC TTATC GTCATACGCC TCTTTACTGCTGTTT TM1040_2127 2233481 - 2232999 - | NusB antitermination factor TM1040_2128 2234029 - 2233505 - | 6,7-dimethyl-8-ribityllumazine synthase TM1040_2129 2235168 - 2234044 - | GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase TM1040_2130 2236064 - 2235462 - | hypothetical protein TM1040_2131 2236669 - 2236064 - | riboflavin synthase subunit alpha TERM 2334 2236913 - 2236893 - H 81 -4.5 -5.10968 | overlap 2236883 AGGAAGAGAGAAAAA CCCTCCGCC CCC GCCGGTGAG AGCACTGGATCGAGC TERM 2335 2236990 - 2237004 + G 80 -3.4 -5.04385 | overlap 2236991 TTCCTGTTTCTGCAG GGGCCT CAT GGGCCG TTTTTTGCAGCTCTG TERM 2336 2237706 - 2237752 + G 73 -10.1 -3.65812 | overlap 2237700 2237703 CACCGAATTCCTCGA GGTGGTTGTTGC-CGGCTTTGCC GAG GGC-GCGCCGCGCCACCACCACC TTGTCTTCAAGGCGC TERM 2337 2237856 - 2237878 + G 100 -14.1 -4.18018 | GCGCGTGCACTATGT GCGCGGCGG CAAGC TCGCCGCGC TTTTGAATGAGGCGC TM1040_2132 2236933 - 2238237 + | capsule polysaccharide biosynthesis TM1040_2133 2238343 - 2239470 + | polysaccharide export protein TERM 2338 2239517 - 2239536 + G 100 -15 -4.18674 | opp_overlap 2239517 TGGACGAGACCAGAA CCGGGAGC AAAC GCTCCCGG TTGTTTGTGTATAAC TERM 2339 2239536 - 2239517 - g 90 -15 -3.484 | opp_overlap 2239517 TGGACGAGACCAGAA CCGGGAGC AAAC GCTCCCGG TTGTTTGTGTATAAC TM1040_2134 2239477 - 2241516 + | capsule polysaccharide biosynthesis TM1040_2135 2242659 - 2241583 - | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase TERM 2340 2242221 - 2242211 - G 74 -6.8 -4.32436 | opp_overlap 2242211 ATACGACCATCAAAA CTCG CGG CGAG TTTCAGCGTCACAAA TM1040_2136 2243202 - 2242735 - | transcriptional regulator NrdR TERM 2341 2243238 - 2243253 + r 71 -9 -3.86524 | overlap 2243234 GATAAATTGTTCTTG TGCGCA GGTT TGCGCA TTTATCCACAACTAT TM1040_2137 2243776 - 2243348 - | hypothetical protein TM1040_2138 2244239 - 2243781 - | hypothetical protein TM1040_2139 2244678 - 2244370 - | hypothetical protein TM1040_2140 2245364 - 2244894 - | hypothetical protein TERM 2342 2245611 - 2245632 + r 80 -11.5 -3.75897 | opp_overlap 2245613, overlap 2245613 GAGGGTCGTACAAAA AACGCCCCC TTCC GGGGGCGTC TTTACGTTAACACTT TERM 2343 2245613 - 2245630 + r 85 -14.1 -3.46068 | opp_overlap 2245613, overlap 2245611 GGGTCGTACAAAAAA CGCCCCC TTCC GGGGGCG TCTTTACGTTAACAC TERM 2344 2245630 - 2245613 - R 100 -14.1 -5.24129 | opp_overlap 2245613 2245611 GGGTCGTACAAAAAA CGCCCCC TTCC GGGGGCG TCTTTACGTTAACAC TM1040_2141 2247643 - 2245649 - | RNA polymerase sigma factor RpoD dnaG 2249818 - 2247809 - | DNA primase TERM 2345 2249585 - 2249567 - G 73 -8.9 -3.86015 | opp_overlap 2249556 2249568 TACCGCCTCCATAAA GGAGACA TTCTC TGTCTCC TGCACGAATTTCAGC TERM 2346 2249871 - 2249848 - R 100 -18.2 -4.34402 | GTGCTCAGAGGAAAA TGCAGCCCGG CAGG CCGGGCTGCA CAGATGCGGGCGTTA TM1040_2143 2250240 - 2249884 - | hypothetical protein TM1040_2144 2250836 - 2250279 - | sarcosine oxidase, gamma subunit TM1040_2145 2253774 - 2250829 - | sarcosine oxidase alpha subunit family protein TERM 2347 2251142 - 2251173 + g 74 -3.6 -4.85782 | opp_overlap 2251138 2251142, overlap 2251159 TCATGCATCAACCCA TCCCGTTCGGACAA GGCC TTGCCCCAGCAGGA TTTGTTTTTCGACAC TERM 2348 2252840 - 2252875 + g 73 -10.5 -3.61398 | gap 2, overlap 2252844 CGATTGAGATAGGCC CGCACCGCCCCCGCCAT CATG ATGCCGGGG-CGGT-CG TTGTTGCGAAAGGCA TERM 2349 2253432 - 2253415 - G 73 -4.7 -4.63218 | overlap 2253400 2253416 2253417 2253430 GGTCTTGTAATAAAA CCCCGCC CCAA GGAAGGG CGCTGCCAGATCATT TERM 2350 2253752 - 2253728 - G 78 -2.2 -5.01811 | gap 2, overlap 2253729 2253732 CCATTAAAGGAAAAA TTCACAGTCCGG TTG CCGGAC-A-GAA GCCCCTTGCCAGATA TM1040_2146 2254049 - 2253771 - | sarcosine oxidase, delta subunit, heterotetrameric TM1040_2147 2255420 - 2254116 - | sarcosine oxidase beta subunit family protein TM1040_2148 2255558 - 2256244 + | TetR family transcriptional regulator TM1040_2149 2256244 - 2257008 + | abortive infection protein TERM 2351 2257072 - 2257091 + T 71 -12.1 -2.72829 | opp_overlap 2257072, overlap 2257071 TCGCCCATAGAAAAA CGGCGGG ATAACA CCCGCCG CTTTCCAAAGATATG TERM 2352 2257091 - 2257072 - T 100 -12.1 -4.96848 | opp_overlap 2257071 2257072 TCGCCCATAGAAAAA CGGCGGG ATAACA CCCGCCG CTTTCCAAAGATATG TM1040_2150 2258545 - 2257115 - | Glu/Leu/Phe/Val dehydrogenase TM1040_2151 2258932 - 2260680 + | hypothetical protein TM1040_2152 2260677 - 2261225 + | TadE-like TM1040_2153 2261229 - 2261834 + | hypothetical protein TERM 2353 2261868 - 2261904 + T 100 -24.6 -2.6927 | gap 1, opp_overlap 2261873, overlap 2261873 GTTCGAGTTTGAATT GCAAAGGCCGCCGGAGC TTGA GC-CCGGCGGCCTTTGC TGCTCTGTCAAAGAT TERM 2354 2261873 - 2261899 + T 100 -17.3 -3.83409 | gap 1, opp_overlap 2261873, overlap 2261868 AGTTTGAATTGCAAA GGCCGCCGGAGC TTGA GC-CCGGCGGCC TTTGCTGCTCTGTCA TERM 2355 2261899 - 2261873 - T 100 -17.3 -3.66356 | gap 1, opp_overlap 2261873 2261868 AGTTTGAATTGCAAA GGCCGCCGGAGC TTGA GC-CCGGCGGCC TTTGCTGCTCTGTCA TM1040_2154 2262378 - 2261944 - | hypothetical protein TM1040_2155 2263757 - 2262375 - | multi anti extrusion protein MatE TERM 2356 2265484 - 2265472 - g 84 -6.2 -4.89477 | overlap 2265436 GGCGCAAGAAGAAAA CGCC TGGTC GGCG CGGCATGACAAACTC TERM 2357 2266565 - 2266553 - g 78 -4.7 -4.7497 | overlap 2266554 GGTATTGATGAAAAA CCCGC CAG GCGCG ATCTGATGCGCGGCC TERM 2358 2266697 - 2266720 + G 72 -2.2 -4.8048 | CAAGGCTTTGCCTTT GCCCGCCCGA TGGA TCAGGAGCGC TTTTTGCTCTGGGCG TM1040_2156 2264063 - 2266777 + | diguanylate cyclase/phosphodiesterase TM1040_2157 2267326 - 2266835 - | hypothetical protein TERM 2359 2267283 - 2267313 + g 76 -10.4 -3.78312 | CGGGCTGGCGATGCT TCCACGGTGGCGAG TAC TTCGCCGCTGTCGA TTTCGTGGCTCATTT TM1040_2158 2268128 - 2267409 - | XRE family transcriptional regulator TM1040_2159 2268651 - 2270105 + | Na+/H+ antiporter NhaC TERM 2360 2270149 - 2270115 - f 78 -12.2 -3.43217 | opp_overlap 2270113, overlap 2270116 2270118 GAGTAATACTCACAA GGATATGCGCCTGACT ACA AATCGGGCGCATATCA CCCTGCATTCCTGCA TERM 2361 2270148 - 2270116 - f 82 -15.7 -2.65448 | opp_overlap 2270113, overlap 2270115 2270118 AGTAATACTCACAAG GATATGCGCCTGACT ACA AATCGGGCGCATATC ACCCTGCATTCCTGC TERM 2362 2270146 - 2270118 - f 74 -12.5 -2.86426 | opp_overlap 2270113, overlap 2270116 2270115 TAATACTCACAAGGA TATGCGCCTGACT ACA AATCGGGCGCATA TCACCCTGCATTCCT TERM 2363 2270959 - 2270972 + G 71 -8.1 -4.11216 | opp_overlap 2270939, overlap 2270939 GATCTCTCGGGAGAT CGCAC ATTG GTGCG TTTTGGCACTGGCGA TM1040_2160 2270248 - 2271159 + | Pirin-like TERM 2364 2271356 - 2271325 - T 89 -11.7 -4.24404 | ATTGAAACTTGAAAA GGCTCCTGA-GGGCA GACC TGCCCCTCAGG-GCC GTCTAAGCCCAAACG TM1040_2161 2271964 - 2271476 - | GCN5-related N-acetyltransferase TM1040_2162 2272598 - 2271969 - | TetR family transcriptional regulator TM1040_2163 2272682 - 2272984 + | hypothetical protein TM1040_2164 2273080 - 2274366 + | homoserine dehydrogenase TERM 2365 2274436 - 2274383 - f 100 -17.3 -3.58533 | opp_overlap 2274381, overlap 2274384 GCAGAACCTCTGAAA CGCGCCGCGTGCGCGCGCTCGGG TGCAAATG CCCAAGGGCGCGCTCAAGGCGCA AAATATATGTTGTTA TERM 2366 2274435 - 2274384 - f 93 -18.6 -2.74799 | opp_overlap 2274381, overlap 2274383 CAGAACCTCTGAAAC GCGCCGCGTGCGCGCGCTCGGG TGCAAATG CCCAAGGGCGCGCTCAAGGCGC AAAATATATGTTGTT glpX 2274543 - 2275526 + | fructose 1,6-bisphosphatase II TERM 2367 2275560 - 2275538 - f 74 -7.6 -4.35604 | opp_overlap 2275553, overlap 2275539 GTAACCCAGAACAAA CCTCAGCGCT TGC AGCGCGGAGC GGGATTTAGGTATTT TERM 2368 2275559 - 2275539 - f 71 -11.1 -3.20639 | opp_overlap 2275553, overlap 2275538 TAACCCAGAACAAAC CTCAGCGCT TGC AGCGCGGAG CGGGATTTAGGTATT TERM 2369 2275589 - 2275613 + G 100 -12.8 -5.00616 | opp_overlap 2275585 2275589 TTGGGAAAAGATGAA GGCCGGGTCC CGCGC GGGTCCGGCC TTTTTTACACAGAAG TERM 2370 2276963 - 2276929 - g 72 -11.2 -3.28712 | overlap 2276931 GGGCGGCGGGCACAA GATGGCTGCGGGCCTC ACG GTGGCGCGCGGCCAGC TGGAACCCGCGATGG TERM 2371 2276961 - 2276931 - g 74 -12.4 -3.21276 | overlap 2276929 GCGGCGGGCACAAGA TGGCTGCGGGCCTC ACG GTGGCGCGCGGCCA GCTGGAACCCGCGAT TERM 2372 2277029 - 2277005 - g 73 -9.2 -3.86015 | GAGCTCTTGGACAAA CAGGGCGCAG GCGAT CTGGGCCCCG CGGATCTGAAGCTCG TM1040_2166 2275574 - 2277385 + | single-stranded-DNA-specific exonuclease RecJ TERM 2373 2277708 - 2277724 + T 72 -5.9 -4.45253 | TGAATGTGCGGAGCT TCTCAAA AAC TTTGGGA TTTGTGTTATTTTCC TM1040_2167 2279320 - 2277923 - | GntR family transcriptional regulator TERM 2374 2279409 - 2279381 - R 74 -13.1 -2.76708 | opp_overlap 2279381 2279380 2279384, overlap 2279385 CAATCGACAGACAAG CAAAGACCGGGCA CAA CGCCCGGCCCCTG TCTTTCCCAGATGCG TERM 2375 2279405 - 2279385 - R 91 -12.5 -4.06361 | opp_overlap 2279384 2279381 2279380, overlap 2279381 CGACAGACAAGCAAA GACCGGGCA CAA CGCCCGGCC CCTGTCTTTCCCAGA TM1040_2168 2281509 - 2279428 - | molydopterin dinucleotide-binding region TERM 2376 2281122 - 2281108 - G 74 -3.5 -4.8667 | CAGACGGTAGAAAAA TCGCC GATCG AGCGA GCCCCCCGCCAGCTC TERM 2377 2281656 - 2281628 - R 100 -16.8 -4.35926 | ATGCCAAATCGAAAA GGCCCACACGGA AGAAA TCCGTATGGGCC AGAAACCCTTTGCGC TM1040_2169 2282726 - 2281704 - | diguanylate cyclase TM1040_2170 2283310 - 2282723 - | hypothetical protein TERM 2378 2283500 - 2283473 - R 86 -5.4 -5.32944 | overlap 2283474 2283475 GGCACAAGCAAAAAA CCGGCAGCGGGA TGTC TCCCACGGCCCA ATACCACCACCAAGA TM1040_2171 2285285 - 2283726 - | trimethylamine methyltransferase TERM 2379 2284447 - 2284403 - G 72 -12.1 -3.08934 | gap 1 GGACATATTGGAACA GGGCAATGGCGCAGAGCGCC TCTGCC AGCGA-CTGCGCCACGGCCC CCGCCATGGTGACCG TM1040_2172 2286107 - 2285415 - | HAD family hydrolase TM1040_2173 2286428 - 2286144 - | hypothetical protein TM1040_2174 2286545 - 2287948 + | response regulator receiver modulated diguanylate cyclase TM1040_2175 2288503 - 2287994 - | hypothetical protein TM1040_2176 2288895 - 2288500 - | hypothetical protein TM1040_2177 2289514 - 2288888 - | RNA polymerase sigma factor TERM 2380 2289514 - 2289544 + g 100 -14.1 -5.00884 | gap 1, overlap 2289515 CCGTCTCGGCGGTCA TCGGTG-CTCCGCT CGCA AGCGGAGACACCGG TTTTTTGGCACCCAT TERM 2381 2289515 - 2289543 + r 90 -15.4 -3.60048 | gap 1, overlap 2289514 CGTCTCGGCGGTCAT CGGTG-CTCCGCT CGCA AGCGGAGACACCG GTTTTTTGGCACCCA TM1040_2178 2290088 - 2289585 - | hypothetical protein TERM 2382 2290437 - 2290417 - g 71 -8.9 -3.84712 | GAACGTCAGACCAAA CCGGCCCTC TGG AAGGGCTGG CGCGGACGTTGCCCG TM1040_2179 2290354 - 2290785 + | hypothetical protein TERM 2383 2290823 - 2290852 + F 91 -17.9 -3.25823 | opp_overlap 2290828, overlap 2290828 CAAAGACGTGACACT GCAAACGGCCCGC CCCT GCGGGCCGTTTTC TTCATGTCAGAGGGC TERM 2384 2290847 - 2290828 - f 95 -16.4 -3.63805 | opp_overlap 2290823 2290828 ACGTGACACTGCAAA CGGCCCGC CCCT GCGGGCCG TTTTCTTCATGTCAG TERM 2385 2290828 - 2290847 + F 100 -16.4 -4.75472 | opp_overlap 2290828, overlap 2290823 ACGTGACACTGCAAA CGGCCCGC CCCT GCGGGCCG TTTTCTTCATGTCAG TM1040_2180 2290874 - 2291602 + | NUDIX hydrolase TM1040_2181 2292531 - 2291629 - | hypothetical protein TERM 2386 2292269 - 2292248 - G 71 -6.5 -4.19506 | opp_overlap 2292240, overlap 2292264 2292265 ATGCCAACCGCAAAA TTGCGCTCC TTAA AGAGCGCGA CGACGCAGACTGTTG TM1040_2182 2293533 - 2292577 - | fatty acid desaturase TM1040_2183 2293801 - 2293595 - | hypothetical protein TERM 2387 2293966 - 2293927 - g 71 -8.4 -4.07786 | gap 1 GATAAAATCGACAAA CGC-CTCCGGGCGGTACAG TTT CGGGACCGCCTTGAGCGCG CGCTGCGCGACAGCG TM1040_2184 2293906 - 2294775 + | XRE family transcriptional regulator fabG 2295598 - 2294846 - | 3-ketoacyl-(acyl-carrier-protein) reductase TM1040_2186 2297073 - 2295598 - | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase TERM 2388 2296453 - 2296467 + g 71 -7.8 -4.07568 | GTCGATCTCTTCGGT GGTGGC GAT GCCATC TTTTACCAGCCACAG TM1040_2187 2297646 - 2297086 - | Lipocalin-like TM1040_2188 2298629 - 2297712 - | hypothetical protein TM1040_2189 2298764 - 2299795 + | transcriptional regulator TERM 2389 2299863 - 2299849 - T 75 -12.8 -3.07043 | opp_overlap 2299849 CCGATCAGGGCAAGA GGGGGC AGC GCCCCC TCCGTTGGCCTCAGT TERM 2390 2299849 - 2299863 + T 72 -12.8 -2.53995 | opp_overlap 2299849 CCGATCAGGGCAAGA GGGGGC AGC GCCCCC TCCGTTGGCCTCAGT TM1040_2190 2300920 - 2299874 - | aldo/keto reductase TERM 2391 2301880 - 2301898 + G 85 -6.7 -4.8622 | opp_overlap 2301872, overlap 2301874 TCAGGAAGTCGGACT GGTGATC GACCA GATCGCC TTTTTCCTTGCCGCC TM1040_2191 2301194 - 2302420 + | major facilitator transporter TM1040_2192 2303400 - 2302522 - | LysR family transcriptional regulator TM1040_2193 2303499 - 2304203 + | short-chain dehydrogenase/reductase SDR TM1040_2194 2304193 - 2304444 + | hypothetical protein TERM 2392 2304570 - 2304538 - T 81 -10.6 -4.08216 | opp_overlap 2304544, overlap 2304544 CCATCGCGCCCAAAA CAAAAAGGGCCAGC GCGCG GCCAGCCCTTTCCG ATGTCTCAGCGCATC TERM 2393 2304564 - 2304544 - T 95 -8.2 -5.45802 | opp_overlap 2304544, overlap 2304538 CGCCCAAAACAAAAA GGGCCAGC GCGCG GCCAGCCC TTTCCGATGTCTCAG TM1040_2195 2306279 - 2304591 - | band 7 protein TERM 2394 2305427 - 2305445 + g 80 -11.6 -3.81488 | CGCGGATGGCTTCTT CGCGGGCG ATC CGCGCGCG TTCTGTTTCGCGCAC TM1040_2196 2307012 - 2306335 - | hypothetical protein TERM 2395 2306490 - 2306511 + g 72 -12.3 -3.09516 | gap 1 CGCGCACTTCGGCGG GGCGACCGCG TTG CGCGGT-GCC TTGGGTGATCACGCC TM1040_2197 2307335 - 2309056 + | methionyl-tRNA synthetase TERM 2396 2309107 - 2309087 - f 95 -15.4 -3.74693 | opp_overlap 2309087 CTCCACCGCATCAAA GGCCGCCC CACCC GGGCGGCC TTTTTCATTGCCCAT TERM 2397 2309087 - 2309107 + F 100 -15.4 -4.86621 | opp_overlap 2309087 CTCCACCGCATCAAA GGCCGCCC CACCC GGGCGGCC TTTTTCATTGCCCAT TM1040_2198 2309443 - 2309622 + | hypothetical protein TERM 2398 2309628 - 2309644 + F 79 -7.9 -4.62471 | opp_overlap 2309623 2309619, overlap 2309630 GACCAAGTGACCCCA CAGGCGC CCC GCGCCTC TTTTTCAAAATTCCA TERM 2399 2309630 - 2309642 + F 79 -10.5 -3.92577 | opp_overlap 2309623 2309619, overlap 2309628 CCAAGTGACCCCACA GGCGC CCC GCGCC TCTTTTTCAAAATTC TM1040_2199 2309674 - 2310942 + | imelysin TERM 2400 2310967 - 2310992 + F 100 -12.5 -4.77036 | overlap 2310968 GGTCCCCGATCTGTC CGGAGTCGCGC CTTG GCGCGGCTCCA TTTTTGATACTCGGA TERM 2401 2310968 - 2310991 + F 90 -16 -3.4574 | overlap 2310967 GTCCCCGATCTGTCC GGAGTCGCGC CTTG GCGCGGCTCC ATTTTTGATACTCGG TERM 2402 2311298 - 2311322 + G 79 -12.1 -3.51934 | opp_overlap 2311297, overlap 2311297 GCCTTGGGCAAGCAG GCGGAATGCGG AGG CTGCATGCCGC TCTTTCTGGACACGA TM1040_2200 2311172 - 2311459 + | putative bacterioferritin-associated ferredoxin TM1040_2201 2311530 - 2311898 + | Ferritin and Dps TERM 2403 2311913 - 2311948 + F 74 -12.4 -3.14132 | ACTCGGTACCAGTTC TCGGTGCGGCCCTCGC TCTG GTGCTGGCCGCACCGC TTCATGCGACGGACC TERM 2404 2313233 - 2313208 - g 72 -13.9 -2.57132 | overlap 2313207 GGGCTGGCCGACAAC CGCCCCGAAGC GCGC GCCACGGGGCG CGAGTGGCGCACCGC TERM 2405 2313415 - 2313361 - g 73 -13.5 -2.71144 | opp_overlap 2313365 2313366, overlap 2313364 CACGGCGGCGAAGCA CAAGCCGCC-CGCGACCGGGTGGTGGC CCT GCCCCCTGCCGACCGCGCGGC-GCTTA TTTCATTCCTGGAGT TERM 2406 2313412 - 2313364 - g 79 -13 -3.50853 | opp_overlap 2313365 2313366, overlap 2313361 GGCGGCGAAGCACAA GCCGCC-CGCGACCGGGTGGTGGC CCT GCCCCCTGCCGACCGCGCGGC-GC TTATTTCATTCCTGG TERM 2407 2313365 - 2313412 + G 76 -8.8 -4.10437 | gap 1, opp_overlap 2313364 2313361, overlap 2313366 GCGGCGAAGCACAAG CCGCC-CGCGACCGGGTGGTGGC CCT GCCCCCTGCCGACCGCGCGGCGC TTATTTCATTCCTGG TERM 2408 2313366 - 2313411 + G 72 -12.3 -3.05539 | gap 1, opp_overlap 2313364 2313361, overlap 2313365 CGGCGAAGCACAAGC CGCC-CGCGACCGGGTGGTGGC CCT GCCCCCTGCCGACCGCGCGGCG CTTATTTCATTCCTG TM1040_2202 2311933 - 2313438 + | hypothetical protein TM1040_2203 2313438 - 2314466 + | hypothetical protein TERM 2409 2314714 - 2314751 + G 77 -11.1 -3.59738 | gap 1, overlap 2314713 2314713 GCGCTCACCCCACAC GC-CCCGAAGCGGTGGCC TTT GCCCGCCGCCCCGGGCGC TTTGCCGATGTGATC TERM 2410 2314799 - 2314819 + G 91 -7.6 -4.82901 | gap 1, overlap 2314802 GCAGCTGGCTCGCCT TGA-GCCCC CCGA GGGGCATCA TTTTTATGGGCACGG TM1040_2204 2314503 - 2315603 + | hypothetical protein TERM 2411 2315656 - 2315632 - f 75 -9.3 -4.09542 | gap 1, opp_overlap 2315632 AAACACCGATACAAA GCCCCTCTGC CCTTTT GC-GAGGGGC TTTCTTTTTGATGCC TERM 2412 2315632 - 2315656 + F 90 -9.3 -4.91852 | gap 1, opp_overlap 2315632 AAACACCGATACAAA GCCCCTCTGC CCTTTT GC-GAGGGGC TTTCTTTTTGATGCC TM1040_2205 2315748 - 2316542 + | DeoR family transcriptional regulator glpD 2316535 - 2318115 + | glycerol-3-phosphate dehydrogenase TERM 2413 2318157 - 2318137 - T 100 -12.5 -5.49568 | opp_overlap 2318138, overlap 2318138 AACGGAAAACAAAAA TGAGGGGCC CGC GGCCCCTCT TCTTCTAACGAAAAA TERM 2414 2318156 - 2318138 - T 100 -16 -3.87301 | opp_overlap 2318138, overlap 2318137 ACGGAAAACAAAAAT GAGGGGCC CGC GGCCCCTC TTCTTCTAACGAAAA TERM 2415 2318138 - 2318156 + T 100 -16 -3.78934 | opp_overlap 2318138 2318137 ACGGAAAACAAAAAT GAGGGGCC CGC GGCCCCTC TTCTTCTAACGAAAA TM1040_2207 2318916 - 2318230 - | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 2416 2319048 - 2319027 - H 70 -10.1 -3.53224 | CATCCTTGCTCCAAA CACAGCCGC CCCC GCGACCGTG ACCGGAGAGGTCTTC TM1040_2208 2319278 - 2319781 + | hypothetical protein TERM 2417 2320633 - 2320614 - g 73 -4.2 -4.62302 | opp_overlap 2320629 GAAGACCTGCAAAAA CGGATCAT CGAG ATGGCCCG CAGCCGCAACATCCT TM1040_2209 2319801 - 2320835 + | cobalamin (vitamin B12) biosynthesis CobW TERM 2418 2320880 - 2320849 - f 70 -10.8 -3.2614 | gap 1, opp_overlap 2320879 GAGTTTCCACACCAA GGGCGCTGACCTCTC GCC GTGAGGTCC-CGCCC GACCCTCCCCCGGGA TERM 2419 2321755 - 2321792 + G 86 -14.7 -3.34962 | opp_overlap 2321741 2321740 TGCCACCGCGTTTTC GGCGCAGGGGCGCGATG GCAG CGCCTCGCCCCTGAGCC TTGTAGGATGTCCCG TERM 2420 2323706 - 2323688 - g 70 -4.4 -4.57073 | opp_overlap 2323688 2323688, overlap 2323689 GACGCCTTGGAAAAA CGCCTGCG CAA CGCGGACA GTTTCGTGCATCTCC cobN 2320961 - 2324206 + | cobaltochelatase TM1040_2211 2324203 - 2325363 + | precorrin-3B synthase TERM 2421 2325748 - 2325787 + G 73 -9.3 -3.97088 | gap 1, opp_overlap 2325705 2325743 2325744 GCGCCCCAAACTCGA CGGCGCAGTGGTCGCCAT CGGCA AT-GCGCCAACTGCGCTG TTTCATCTTCTGAAC cobH 2325365 - 2325994 + | precorrin-8X methylmutase TM1040_2213 2326011 - 2326742 + | precorrin-2 C20-methyltransferase TM1040_2214 2326739 - 2327560 + | precorrin-3 methyltransferase TM1040_2215 2328318 - 2327557 - | precorrin-6A reductase TERM 2422 2327661 - 2327704 + g 73 -10 -3.61398 | opp_overlap 2327658, overlap 2327662 CCGGCAACGCAAGAC TGCGCGCGGCGCTGAGCTTG GCTT CGGCCCCCGCGCCGCCCGCG TTCTTGGCGACCACA TM1040_2216 2328500 - 2329525 + | precorrin-6y C5,15-methyltransferase, subunit CbiE TERM 2423 2329735 - 2329752 + G 70 -9.8 -3.53563 | ACCCCGACCCTTTCG CCGCGC ATCCAC GCGCGG TTTGACACCGGATCT TM1040_2217 2329522 - 2329884 + | putative precorrin methylase TM1040_2218 2329881 - 2330675 + | precorrin-4 C11-methyltransferase TERM 2424 2331493 - 2331539 + G 100 -12.3 -4.57516 | gap 2, opp_overlap 2331513, overlap 2331494 CGGCCCCTCGCGCCC TGCCGCGTCCGCCCGCACAACGC ATC GCATTG-GCGCGCG-ATGCGGCG TTTTCCTTTACCTAT TERM 2425 2331494 - 2331538 + G 81 -13.6 -3.33425 | gap 2, opp_overlap 2331513, overlap 2331493 GGCCCCTCGCGCCCT GCCGCGTCCGCCCGCACAACGC ATC GCATTG-GCGCGCG-ATGCGGC GTTTTCCTTTACCTA TM1040_2219 2330775 - 2332091 + | cobyrinic acid a,c-diamide synthase TERM 2426 2332439 - 2332470 + G 80 -15 -3.05844 | ATCATTCCCGGTGTC ACCGCCGCCTCGGC AGCC GCTGCGGCGGCGGG TATTCCGCTCACGCG TM1040_2220 2332088 - 2332825 + | uroporphyrin-III C-methyltransferase TM1040_2221 2332822 - 2333205 + | hypothetical protein TERM 2427 2333764 - 2333797 + G 100 -14.5 -4.71426 | GCGTTGTTCGCTGGT GCTGCAGCGGGGCTG ATTG CCGCCCTTCTGCAGC TTTTCTTCGTGCAGC TM1040_2222 2333650 - 2334423 + | cobalt transporter subunit CbtA, putative TM1040_2223 2334529 - 2335020 + | hypothetical protein TERM 2428 2335000 - 2335038 + F 72 -10.9 -3.53444 | overlap 2335002 2335003 CCGGTCGAGGCGCGC GTTGTCGTGAGTGCCCC CTGAT GGGGCACTCTTGACCTC TTTGCGCGGGCGTCC TERM 2429 2335002 - 2335036 + F 77 -12.1 -3.34517 | overlap 2335000 2335003 GGTCGAGGCGCGCGT TGTCGTGAGTGCCCC CTGAT GGGGCACTCTTGACC TCTTTGCGCGGGCGT TERM 2430 2335003 - 2335035 + F 82 -15.6 -2.60496 | overlap 2335002 2335000 GTCGAGGCGCGCGTT GTCGTGAGTGCCCC CTGAT GGGGCACTCTTGAC CTCTTTGCGCGGGCG TM1040_2224 2335093 - 2335857 + | precorrin 6A synthase TERM 2431 2335850 - 2335866 + T 70 -3 -4.72986 | gap 1, overlap 2335853 ACATGCTGGAACGCC TGCGCTG ACCC CAGC-CA TTTTTCGTGACGCTC TM1040_2225 2337271 - 2336081 - | kynureninase TM1040_2226 2338112 - 2337273 - | tryptophan 2,3-dioxygenase TERM 2432 2338249 - 2338269 + H 72 -9.7 -3.69482 | overlap 2338250 AACTGCAGTCTCCTC TCGAACGAG CTA CTCGTTCGC TTGTCTCTTCACTGG TERM 2433 2338250 - 2338268 + H 74 -13.2 -2.81207 | overlap 2338249 ACTGCAGTCTCCTCT CGAACGAG CTA CTCGTTCG CTTGTCTCTTCACTG TERM 2434 2338981 - 2338996 + G 70 -3.2 -4.58395 | overlap 2338980 AACTCGACAGCATCC TCGCGA ACCC TCGGGA TTTTTCCGAACTCAG TM1040_2227 2338410 - 2340884 + | MCP methyltransferase, CheR-type TM1040_2228 2341200 - 2341916 + | hypothetical protein TERM 2435 2341949 - 2341906 - T 74 -10.3 -3.56092 | gap 1, opp_overlap 2341916 GCATGATGGTGGAAA CCGGGACGTAGCGCGGGG CGTCTTGTT CCACACGCTAC-CCCCGG GAGCATGACTGCTCT TERM 2436 2342143 - 2342164 + T 79 -8.7 -4.20136 | gap 1 GGTATGGTCCAGCTG TTGCGACGCC ATG GGCG-CGCGA TTTGGTTTTGCAAAT TERM 2437 2342389 - 2342345 - T 73 -5 -4.60797 | gap 1 CGCTTAGAGAGAAAA CCTC-ACAGGTTGGACACCTG ATCG CCGAGATCCAACCTTTCGAGG TTCTTTTTCAATTCT TM1040_2229 2344095 - 2342347 - | diguanylate cyclase/phosphodiesterase TM1040_2230 2344893 - 2345891 + | zinc-binding alcohol dehydrogenase TERM 2438 2345940 - 2345907 - T 100 -16.9 -4.66537 | opp_overlap 2345913, overlap 2345913 GTGCCGAACACAAAA CAAAAAGGGCCCC GCAGATAT GGGGCCCTTTTTG TGAATTGAAGCACAC TERM 2439 2345913 - 2345934 + T 100 -10.8 -4.91712 | opp_overlap 2345913 2345907 AACACAAAACAAAAA GGGCCCCG CAGATA TGGGGCCC TTTTTGTGAATTGAA TERM 2440 2345934 - 2345913 - T 100 -10.1 -5.60556 | opp_overlap 2345913, overlap 2345907 AACACAAAACAAAAA GGGCCCC GCAGATAT GGGGCCC TTTTTGTGAATTGAA TM1040_2231 2346357 - 2345962 - | endoribonuclease L-PSP TM1040_2232 2346758 - 2346354 - | thioesterase superfamily protein TM1040_2233 2347448 - 2346762 - | ABC transporter related TERM 2441 2346973 - 2347008 + g 74 -12.6 -3.21099 | gap 1, opp_overlap 2347003, overlap 2346965 ATGATCGGCGCAAGG CCCTCTGTCGCCTCATC CAG GATGAGGAGAC-GCGGG TTGGTCATCAGCGCG TM1040_2234 2348194 - 2347445 - | ABC transporter related TM1040_2235 2349170 - 2348187 - | inner-membrane translocator TM1040_2236 2350087 - 2349167 - | inner-membrane translocator TERM 2442 2350101 - 2350140 + r 82 -15.7 -2.57067 | gap 1, overlap 2350097 ATGTGTCTTCTTTCA GGTGTGTCCCGGCCCGCA CAGAC TGCGAGCCGGG-CGCGCC TCACTTACATCTTGC TM1040_2237 2351275 - 2350145 - | extracellular ligand-binding receptor TM1040_2238 2352930 - 2351314 - | AMP-dependent synthetase and ligase TM1040_2239 2354081 - 2352927 - | acyl-CoA dehydrogenase-like TM1040_2240 2354950 - 2354147 - | enoyl-CoA hydratase TERM 2443 2354564 - 2354540 - G 74 -6.4 -4.37506 | gap 1, opp_overlap 2354562, overlap 2354541 ACGATTAAAGAGAAA CGCCAC-CTTG GCCT CAGGTGTGGCG ATGCGCAGATCACTG TM1040_2241 2355442 - 2354957 - | MarR family transcriptional regulator TM1040_2242 2356188 - 2355439 - | short-chain dehydrogenase/reductase SDR TM1040_2243 2358479 - 2356185 - | salicylyl-CoA 5-hydroxylase TERM 2444 2358760 - 2358727 - R 70 -11.8 -2.61728 | gap 2, opp_overlap 2358755, overlap 2358726 ACTGCCAATATCAAG GGCCAAGGGCAGGCCC GTCT GAGCCTGCCCT-G-CC GTGAGTCGCACCAGG TM1040_2244 2359728 - 2358787 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding TERM 2445 2359055 - 2359045 - G 79 -8.2 -4.57073 | GAGCGTGTTGAAAAA CCGG TTT CCGG CAAAATCGGGAAAGG TERM 2446 2359620 - 2359654 + g 76 -14.3 -2.52464 | gap 1, opp_overlap 2359602 GATGCTGTTGAGGCA TCTGCGGGCGGATGGC ATGG GCCACCCGCTCGC-GA TAGCTTGGCGCGACA TM1040_2245 2360392 - 2359730 - | glutathione S-transferase-like TM1040_2246 2360919 - 2360446 - | hypothetical protein TERM 2447 2361317 - 2361292 - g 79 -14.7 -2.8547 | gap 1, opp_overlap 2361283, overlap 2361294 AGGCGGCAGACGATA CAGCGCGC-GGC GCG GCCAGCGCGCCG GTGGGTCTGTTACGT TERM 2448 2361315 - 2361294 - g 75 -13.7 -2.97747 | gap 1, opp_overlap 2361283, overlap 2361292 GCGGCAGACGATACA GCGCGC-GGC GCG GCCAGCGCGC CGGTGGGTCTGTTAC TM1040_2247 2361048 - 2361980 + | LysR family transcriptional regulator TM1040_2248 2362825 - 2361977 - | nicotinate-nucleotide pyrophosphorylase [carboxylating] TM1040_2249 2364417 - 2362822 - | L-aspartate oxidase TM1040_2250 2365480 - 2364425 - | quinolinate synthetase TM1040_2251 2365793 - 2366992 + | hypothetical protein TERM 2449 2367229 - 2367244 + G 82 -9 -4.43309 | overlap 2367218 GTCACGGGTGTGCTG GCGACA CTCC TGTCGC TTTTGATTACACTTC TM1040_2252 2367010 - 2368707 + | ABC transporter, fused inner membrane subunits TM1040_2253 2368700 - 2369335 + | ABC transporter related TM1040_2254 2369942 - 2369508 - | hypothetical protein TERM 2450 2370013 - 2369983 - R 81 -13.2 -3.6682 | overlap 2369984 TGTGACCTACTCAAA CGCGTTGGGGCGCC TCA AGCGCCCCAACCAG TGTCACAGGACAAGG TERM 2451 2370011 - 2369984 - R 79 -14.2 -2.79878 | gap 1, overlap 2369983 GTGACCTACTCAAAC GCGTTGGGGCGCC TCA AGCGCCCCAAC-C AGTGTCACAGGACAA TM1040_2255 2371710 - 2370043 - | putative ABC transporter ATP-binding protein TM1040_2256 2371759 - 2372181 + | hypothetical protein TM1040_2257 2372457 - 2372696 + | hypothetical protein nadD 2372850 - 2373452 + | nicotinic acid mononucleotide adenylyltransferase TERM 2452 2374251 - 2374226 - g 76 -9.7 -4.13014 | gap 1 TCTATACCTCGAAAA TGGCCG-TCGCG CGG CGCGATCTGCCA GTCTACAGCTATGAG TM1040_2259 2373550 - 2375034 + | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase TERM 2453 2375102 - 2375085 - T 100 -9.8 -5.08088 | opp_overlap 2375083 2375075 2375085 AAGCCGGAACAAAAA GGGCGC CATCCC GCGCCC TGTTCTGCTCATTCT TM1040_2260 2375602 - 2375180 - | hypothetical protein TERM 2454 2376444 - 2376429 - g 73 -4.7 -4.72272 | TGTGCCGATGAAAAA GGTCT GCGCCG AGACC TATACCATCACCTTT TERM 2455 2377071 - 2377021 - g 71 -7 -4.24342 | gap 3, overlap 2377023 2377024 GGCTTCATCAACAAA TACGCGCCCGACGCCACTGCCGAGA CCCA CCCCGGCA-TGG-ATCAGGC-CGCA GGCCATGCAGTGCGC lysK 2375821 - 2377464 + | lysyl-tRNA synthetase TERM 2456 2377492 - 2377514 + F 100 -14.1 -4.27584 | opp_overlap 2377484 2377492 CCAATAATCATACAA CGGGCGTCC CAAGT GGGCGCCCG TTTTCCGTTGGCCGT TERM 2457 2377514 - 2377492 - f 81 -12.7 -3.64831 | gap 1, opp_overlap 2377492, overlap 2377484 CCAATAATCATACAA CGGGCGTCCC AAGT GGG-CGCCCG TTTTCCGTTGGCCGT TM1040_2262 2377716 - 2378129 + | hypothetical protein TM1040_2263 2378251 - 2380536 + | hypothetical protein TM1040_2264 2381048 - 2380533 - | pyridoxamine 5'-phosphate oxidase-related, FMN-binding TERM 2458 2380619 - 2380599 - G 74 -5.3 -4.56597 | GCCGCCGTTCAAAAA CGCCTCCCG GAT CTGGAAACG CACAAAATGAAAATC TM1040_2265 2381788 - 2381126 - | hypothetical protein TM1040_2266 2381892 - 2382212 + | antibiotic biosynthesis monooxygenase TM1040_2267 2382629 - 2382231 - | hypothetical protein TERM 2459 2382268 - 2382288 + g 80 -10.4 -4.07568 | gap 1 AGCACCCGGCACTGA GCG-GCCGC CTCG GCGGCACGC TTTTGGGCGGCAGGC TM1040_2268 2383712 - 2382783 - | metal-dependent protein hydrolase TERM 2460 2383385 - 2383369 - G 70 -4.3 -4.44245 | overlap 2383370 ACAGGACGCACAAAA TCCGCAT CAA ACGCGGC GTGAACCCGGTCGAG TM1040_2269 2384532 - 2383855 - | lipolytic enzyme, G-D-S-L TM1040_2270 2384585 - 2385289 + | ABC transporter related TERM 2461 2386318 - 2386333 + G 70 -4.6 -4.45083 | overlap 2386310 2386319 2386320 TTGATTGCAGCACAG TTGCCG TTTC CGGCGG TTTTCTCGATCTACC TERM 2462 2387581 - 2387626 + G 72 -11.7 -3.29144 | gap 1, overlap 2387606 2387620 ATCCTGCGCAGCTTT GCGCTGCGCTCCGCG-ATCCTC GGG GCGGCTGCGGGGGGCGTGGCGC TTCTGGCAGGCATCC TM1040_2271 2385286 - 2387814 + | hypothetical protein TERM 2463 2387840 - 2387818 - T 73 -9 -3.96148 | opp_overlap 2387819, overlap 2387819 GCGCGCGACTAGAAA GCGCGCGCCT GTC AGGCGGGCGT TTTCGCCGGGCTGGG TERM 2464 2387819 - 2387839 + T 91 -12.5 -4.08216 | opp_overlap 2387818 2387819 CGCGCGACTAGAAAG CGCGCGCCT GTC AGGCGGGCG TTTTCGCCGGGCTGG TERM 2465 2387839 - 2387819 - T 75 -12.5 -2.97475 | opp_overlap 2387819, overlap 2387818 CGCGCGACTAGAAAG CGCGCGCCT GTC AGGCGGGCG TTTTCGCCGGGCTGG TM1040_2272 2388293 - 2387829 - | BadM/Rrf2 family transcriptional regulator TERM 2466 2387967 - 2387943 - G 77 -7.8 -4.3739 | gap 1 GAGCGCGCCATAAAA CGC-CTCCCCC GCCC GGGTGAGCGCG TCGCGCAGACGGCAG TM1040_2273 2388397 - 2388966 + | hypothetical protein TM1040_2274 2388963 - 2390147 + | hypothetical protein TERM 2467 2390178 - 2390151 - T 100 -11.2 -4.93318 | opp_overlap 2390153, overlap 2390153 GAGAATTCATAAAAA TACGGGCAGCGC CTTG GCCCTGCCCGTT CATAAATTGTGACGT TERM 2468 2390176 - 2390153 - T 95 -13.8 -4.07789 | opp_overlap 2390153, overlap 2390151 GAATTCATAAAAATA CGGGCAGCGC CTTG GCCCTGCCCG TTCATAAATTGTGAC TERM 2469 2390153 - 2390176 + T 81 -13.8 -3.23711 | opp_overlap 2390153 2390151 GAATTCATAAAAATA CGGGCAGCGC CTTG GCCCTGCCCG TTCATAAATTGTGAC TERM 2470 2390199 - 2390219 + T 74 -10.3 -3.64703 | opp_overlap 2390186, overlap 2390200 2390202 ATTGTGACGTGATCC ACGCCGCGC CTG GCGCGGTGG TTTCAATCAGCCGCG TERM 2471 2390200 - 2390218 + T 76 -13.8 -2.78679 | opp_overlap 2390186, overlap 2390199 2390202 TTGTGACGTGATCCA CGCCGCGC CTG GCGCGGTG GTTTCAATCAGCCGC TERM 2472 2390202 - 2390216 + T 75 -12.8 -2.94144 | opp_overlap 2390186, overlap 2390200 2390199 GTGACGTGATCCACG CCGCGC CTG GCGCGG TGGTTTCAATCAGCC gltX 2391551 - 2390226 - | glutamyl-tRNA synthetase TERM 2473 2391203 - 2391225 + g 74 -4 -4.81249 | CGCGGTCATAGACCG GCGGCTTGCC CAT GTTGAGCTGC TTTTTGCGTTTGAGA TERM 2474 2392638 - 2392679 + G 76 -12.4 -3.41587 | gap 3 ATCGGCTATCACATG CCCTTC-CC-TGCCGC-CGGC TAT GTCGAGCGGCGCGGCGAAGGG TTCCGTTTTGTGCCG TM1040_2276 2391780 - 2392718 + | twin-arginine translocation pathway signal TM1040_2277 2394016 - 2392715 - | FAD dependent oxidoreductase nadE 2395815 - 2394154 - | NAD synthetase TM1040_2279 2395984 - 2397486 + | hypothetical protein TERM 2475 2397829 - 2397842 + G 88 -6.7 -5.00616 | overlap 2397818 2397808 TGGAGCGTATCACGC CAGAG ACGC CTCTG TTTTTTGACCGGGAC TM1040_2280 2397495 - 2398535 + | hypothetical protein TM1040_2281 2400055 - 2398532 - | deoxyribodipyrimidine photolyase-related protein TERM 2476 2398710 - 2398725 + g 90 -6 -5.27477 | opp_overlap 2398710, overlap 2398712 AGCAGGTTGAACGGA CAGGCG CCCT CGCCCG TTTTTTGCTTCACCT TERM 2477 2400541 - 2400525 - g 71 -5.8 -4.3129 | opp_overlap 2400525 GACCCATGATGAAAA GCTCGA GATTG CCGAGC TTCTGGACGATATGG TM1040_2282 2400415 - 2401998 + | 2-isopropylmalate synthase TERM 2478 2402024 - 2402041 + T 100 -10.5 -5.5353 | opp_overlap 2402024 ATCAAAGATAAAAAA GGGCGCC GTCG GGCGTCC TTTTTTGTTACTGTG TERM 2479 2402041 - 2402024 - T 95 -8.3 -5.5762 | opp_overlap 2402024 ATCAAAGATAAAAAA GGGCGCC GTCG GGCGTCC TTTTTTGTTACTGTG TM1040_2283 2403336 - 2402080 - | putative transport protein TERM 2480 2402822 - 2402812 - G 70 -4.6 -4.57353 | overlap 2402814 GGTCAGCACATAAAA CAGC GCC GCCG CGACGCAAAATCCAA TERM 2481 2402828 - 2402814 - G 73 -9.2 -3.89814 | overlap 2402812 TCAGCACATAAAACA GCGCCG CCG CGACGC AAAATCCAACAGGCC TERM 2482 2403678 - 2403717 + G 78 -2.8 -5.15969 | overlap 2403682 TTACTCCACAGTCCT CATGCTCATCGTCATCAT TCCT GTGATGGCGCTGACGGTG TTTTTTGCCTTCAAA TM1040_2284 2403547 - 2404638 + | ubiquinol oxidase, subunit II TM1040_2285 2404642 - 2406678 + | cytochrome-c oxidase TERM 2483 2406763 - 2406739 - g 80 -14.4 -3.06796 | overlap 2406741 TTCTATGTCACCGAA GATCCCCATG CAGGT CATGGGGATC ACCACCACGACACCG TM1040_2286 2406682 - 2407326 + | cytochrome c oxidase, subunit III TM1040_2287 2407323 - 2407670 + | cytochrome C oxidase subunit IV TERM 2484 2407690 - 2407710 + G 95 -15.4 -3.92869 | opp_overlap 2407686 2407684 2407683 AGGTACAAGCACGGA GGGCGGCG GCAGA CGCCGCCC TTTCTGGGTCGATGC TERM 2485 2408179 - 2408209 + G 79 -12.5 -3.43722 | gap 1, overlap 2408178 CGATCTGGCGCTGAT GTCCGCCGACCGCG GCAT CGAGG-CGGCGGGC TATTATATTGATGCA TM1040_2288 2407667 - 2408398 + | Surfeit locus 1 TM1040_2289 2408850 - 2408455 - | glyoxalase/bleomycin resistance protein/dioxygenase TM1040_2290 2409352 - 2408933 - | histidine triad (HIT) protein TERM 2486 2409314 - 2409286 - G 73 -8.7 -3.87815 | opp_overlap 2409285 CGTCATCTTCATAAA CCCGCATGGAGGG GAT CTCTCCGCGCAGG ATCTTGGCAAAGATA TM1040_2291 2409675 - 2411333 + | cytochrome-c oxidase TERM 2487 2411353 - 2411389 + F 100 -21.7 -4.36914 | opp_overlap 2411353 2411358, overlap 2411358 GGCTTGAGCTGAAAC CAAAACGCCCCGGAGCC ACA GGCTTCGGGGCGTTTTC TTTTCTCGCGCAGGG TERM 2488 2411389 - 2411353 - f 95 -19.5 -2.75844 | opp_overlap 2411353 2411358, overlap 2411358 GGCTTGAGCTGAAAC CAAAACGCCCCGGAGCC ACA GGCTTCGGGGCGTTTTC TTTTCTCGCGCAGGG TERM 2489 2411384 - 2411358 - f 100 -19.4 -4.55798 | opp_overlap 2411358 2411353, overlap 2411353 GAGCTGAAACCAAAA CGCCCCGGAGCC ACA GGCTTCGGGGCG TTTTCTTTTCTCGCG TERM 2490 2411358 - 2411384 + F 100 -21.6 -5.18371 | opp_overlap 2411353 2411358, overlap 2411353 GAGCTGAAACCAAAA CGCCCCGGAGCC ACA GGCTTCGGGGCG TTTTCTTTTCTCGCG TERM 2491 2411636 - 2411647 + G 71 -5.8 -4.38712 | CACACCGCTGTTCTG GGGA CTGA TCCC TTTTCTGACGCTGGC TM1040_2292 2411475 - 2411969 + | hypothetical protein TERM 2492 2411995 - 2412020 + T 83 -14.7 -3.3382 | opp_overlap 2411996, overlap 2411996 CCACAGGTACAAAAA ACCCGGCTCTG GGGT CAGAGCCGGGG TTCATCTGTCGTCGC TERM 2493 2411996 - 2412019 + T 86 -18.2 -2.59971 | opp_overlap 2411996, overlap 2411995 CACAGGTACAAAAAA CCCGGCTCTG GGGT CAGAGCCGGG GTTCATCTGTCGTCG TERM 2494 2412019 - 2411996 - T 100 -18.2 -5.29782 | opp_overlap 2411996 2411995 CACAGGTACAAAAAA CCCGGCTCTG GGGT CAGAGCCGGG GTTCATCTGTCGTCG TM1040_2293 2412541 - 2412068 - | hypothetical protein TM1040_2294 2412716 - 2413876 + | carbamoyl phosphate synthase small subunit TERM 2495 2413898 - 2413932 + F 100 -26.6 -4.57341 | CGCCGTTTCAGTTCT GACACCGCCCGGTTGC CAT GCAATCGGGCGGTGTC TTTTTGCGGCGGCTT TM1040_2295 2414270 - 2415799 + | glycosyl transferase family protein TM1040_2296 2416452 - 2415802 - | GntR family transcriptional regulator TM1040_2297 2416579 - 2417223 + | pyrimidine 5-nucleotidase TM1040_2298 2417308 - 2417556 + | hypothetical protein TERM 2496 2417773 - 2417800 + G 70 -4.7 -4.56597 | gap 1 CACCACGCGTGAGGA CGCGG-GGGCCG ACTTG CGCACCACCGCG TTTTTGCAGCCGGCC TM1040_2299 2417642 - 2418838 + | 2-octaprenyl-6-methoxyphenyl hydroxylase TERM 2497 2418868 - 2418843 - T 100 -21.9 -4.52589 | overlap 2418859 GCGTGCGATAGAAAA CGGGCCTGCCC CAAA GGGCAGGCCCG CGCCTCCGGCGGAGA TM1040_2300 2420032 - 2418908 - | aminotransferase, class V TERM 2498 2419386 - 2419399 + g 76 -9.5 -4.08767 | GTGGTCTCCTCCAGA CGCGC AAGC GCGCG TTTTGAGAGCATCAC TM1040_2301 2420613 - 2420155 - | AsnC family transcriptional regulator TM1040_2302 2421065 - 2420610 - | AsnC family transcriptional regulator TERM 2499 2422144 - 2422116 - g 71 -9.6 -3.79251 | gap 1, overlap 2422136 CAGCCCACCATCAAA GCGT-CCCGCCGT GCCA ACGACGAGCACGC GATCGAGGCCACCGG TM1040_2303 2421204 - 2422226 + | ketol-acid reductoisomerase TERM 2500 2422265 - 2422227 - f 74 -10.3 -3.5456 | gap 1, overlap 2422223 AAGTCCAAGAACTAA GGCCTGCGATTGCGGAGC TCAG GCTCCACAACC-CGGACC TCTGCAGGGCGCCTC TERM 2501 2422273 - 2422296 + F 91 -17.4 -3.31144 | opp_overlap 2422288 CCCGGACCTCTGCAG GGCGCCTCGG GAAA CCGGGGCGCC TTCTCCACGTCACAG TERM 2502 2422410 - 2422443 + G 78 -13.9 -3.23216 | gap 1 CCGTTACTGGGCCAT GGTGGCCGCCTTGGGT CTC ACCTGGGGCGGC-ACC TTCATGGTGGTGGAA TM1040_2304 2422378 - 2423277 + | hypothetical protein TM1040_2305 2424741 - 2423398 - | phosphoglucosamine mutase TM1040_2306 2425797 - 2424802 - | dihydropteroate synthase TM1040_2307 2426714 - 2425794 - | dihydroneopterin aldolase TERM 2503 2426771 - 2426750 - R 78 -4.3 -4.87626 | opp_overlap 2426750 2426752, overlap 2426752 TTGGAACAGGAAAAA GGCTGTGTC AGGA GTCACAGTC TTAGGTCCGTTCCAG TM1040_2308 2427511 - 2426867 - | cell wall hydrolase, SleB TERM 2504 2427161 - 2427185 + g 74 -12.1 -3.21912 | opp_overlap 2427153 2427152, overlap 2427157 2427164 GCAAAACGTATTCGG GAACTGGGCGC TTT GCACCCGGTTC TTGATCACTTCGGCC TERM 2505 2427382 - 2427372 - G 71 -6.8 -4.15044 | opp_overlap 2427372 2427371 TTTCCGCCCAAGAAA CGCA GCA TGCG CTCTTTGGGTGCGGC TM1040_2309 2430245 - 2427681 - | pyruvate phosphate dikinase TERM 2506 2430380 - 2430353 - R 100 -19.2 -4.82901 | overlap 2430334 CCCCTGCTACAAAAA CGACCCCCGCCA TATC TGGCGAGGGTCG AAGCGTGCAAAATAT glyS 2432469 - 2430406 - | glycyl-tRNA synthetase subunit beta TERM 2507 2430568 - 2430616 + g 70 -10 -3.53091 | opp_overlap 2430581, overlap 2430571 GGCCATGCCGCCCAT GGCGGCCGCGAAATCCTCGGCC TCGAT GGCCGTGGAGATCGCTGCCTCG TTTGCAGCCAGCGCT TERM 2508 2430571 - 2430613 + g 79 -14.7 -2.90496 | opp_overlap 2430581, overlap 2430568 CATGCCGCCCATGGC GGCCGCGAAATCCTCGGCC TCGAT GGCCGTGGAGATCGCTGCC TCGTTTGCAGCCAGC TERM 2509 2430603 - 2430581 - G 70 -10.5 -3.53091 | opp_overlap 2430571 2430568 ATGGCGGCCGCGAAA TCCTCGGCC TCGAT GGCCGTGGA GATCGCTGCCTCGTT TERM 2510 2432117 - 2432131 + g 95 -12.8 -4.21194 | opp_overlap 2432109 GCAATGATCTCGGCC GCCGGG CGG CCCGGC TTTTCGATGGTGGCA TERM 2511 2432399 - 2432432 + g 93 -14.5 -3.72576 | opp_overlap 2432399 ATCCGCTTCTTCAAA TCTTCGCCCGCGCGC GCCT GCATGCGGGCGGGGA TTTCCTCGGAGAAAA TERM 2512 2432432 - 2432399 - G 70 -10.1 -3.53091 | opp_overlap 2432399 ATCCGCTTCTTCAAA TCTTCGCCCGCGCGC GCCT GCATGCGGGCGGGGA TTTCCTCGGAGAAAA TM1040_2311 2433074 - 2432547 - | hypothetical protein TERM 2513 2432748 - 2432709 - G 80 -9.8 -4.12532 | gap 1 CTTTTCAGAGATAAA CGCCCGC-GCGCGCCCGTC CTT GAGGGCCGCGCCGATGGCG GCAGCGTCAAAGCAG glyQ 2434047 - 2433097 - | glycyl-tRNA synthetase subunit alpha TERM 2514 2436107 - 2436093 - g 95 -11.4 -4.58395 | TCGATCCTGCAAAAA GAGGCC ACT GGCCTC ACCACGCTGGTCAGC TM1040_2313 2434344 - 2436134 + | peptidoglycan binding domain-containing protein TERM 2515 2436167 - 2436194 + T 100 -15.6 -5.06414 | opp_overlap 2436168, overlap 2436168 ACTGCCTCAGACAAA AGGCTCCCGAAG TGAT CTTCGGGAGCCC TTTTTATTGGAACGA TERM 2516 2436168 - 2436193 + T 100 -19.1 -3.63367 | opp_overlap 2436168, overlap 2436167 CTGCCTCAGACAAAA GGCTCCCGAAG TGAT CTTCGGGAGCC CTTTTTATTGGAACG TERM 2517 2436193 - 2436168 - T 100 -19.1 -4.52589 | opp_overlap 2436168 2436167 CTGCCTCAGACAAAA GGCTCCCGAAG TGAT CTTCGGGAGCC CTTTTTATTGGAACG TM1040_2314 2436690 - 2436241 - | ribose-5-phosphate isomerase TM1040_2315 2437457 - 2436816 - | short-chain dehydrogenase/reductase SDR TM1040_2316 2438043 - 2437528 - | hypothetical protein TM1040_2317 2439094 - 2438318 - | hypothetical protein TM1040_2318 2439684 - 2439184 - | GCN5-related N-acetyltransferase TERM 2518 2440107 - 2440086 - g 85 -8.7 -4.71828 | overlap 2440106 ATGCGATGAACAAAA CCTCTGCCG CACT CGACAAAGG CATCGACGAATTCGC TERM 2519 2440129 - 2440106 - g 73 -8.8 -3.89346 | overlap 2440086 2440107 2440110 2440118 GCCGCACTCGACAAA GGCATCGACG AATT CGCCCATGCC GGTCTTGAGGCCGTC TM1040_2319 2439794 - 2440399 + | hypothetical protein TM1040_2320 2440401 - 2441042 + | chloramphenicol O-acetyltransferase TERM 2520 2441092 - 2441121 + T 75 -9.1 -4.10925 | opp_overlap 2441094, overlap 2441093 ACAATGCATATAAAA AAGCCGCGGTCCC TTTG GGGACCGCGACCG TTTTGAGACCTCTGT TERM 2521 2441093 - 2441120 + T 75 -12.6 -3.06073 | opp_overlap 2441094, overlap 2441092 CAATGCATATAAAAA AGCCGCGGTCCC TTTG GGGACCGCGACC GTTTTGAGACCTCTG TERM 2522 2441119 - 2441094 - T 100 -18.3 -5.38951 | opp_overlap 2441093 2441092 AATGCATATAAAAAA GCCGCGGTCCC TTTG GGGACCGCGAC CGTTTTGAGACCTCT TM1040_2321 2442754 - 2441144 - | sulphate transporter TM1040_2322 2443037 - 2443366 + | hypothetical protein TM1040_2323 2443610 - 2444542 + | hypothetical protein TERM 2523 2444578 - 2444562 - f 75 -8.7 -4.08216 | overlap 2444564 TCATCTTTTTCAAAA TACCTCC GCC GGAGGCA TCCCATGCTTGCCAA TERM 2524 2445241 - 2445224 - g 71 -6.9 -4.23758 | opp_overlap 2445223 ATGCCAGAGGCAAAA CTCGCCC GTGA GGCCGAG CTCTGCTATGCCTCC TERM 2525 2445379 - 2445353 - g 70 -3.5 -4.62471 | overlap 2445370 GGCAACTCTGAAAAA GGGCGCGCCTT GATCA AGGGCCTGCCC GCACGTCTGGGCGCA TM1040_2324 2444645 - 2445517 + | 5'-methylthioadenosine phosphorylase TERM 2526 2445897 - 2445885 - g 84 -9.1 -4.56597 | GCCTGTGCGCAAAAA GGGCA AAC TGCCC GGCGCCACGATTTCG TM1040_2325 2445634 - 2446173 + | adenine phosphoribosyltransferase TERM 2527 2446246 - 2446263 + F 93 -8.4 -5.24989 | opp_overlap 2446246 CTGGATTTTGGAAAA GCTCCC GGCTTA GGGAGC TTTTTTCATGTGTCA TERM 2528 2446263 - 2446246 - f 73 -8.4 -4.09685 | opp_overlap 2446246 CTGGATTTTGGAAAA GCTCCC GGCTTA GGGAGC TTTTTTCATGTGTCA TM1040_2326 2446388 - 2446870 + | beta-Ig-H3/fasciclin TERM 2529 2446924 - 2446905 - T 70 -10.6 -3.28924 | opp_overlap 2446905 TAGGCGTGGCGACAA GGGGGGCC TCCG GGCTCCCC TTTCTTGTAGGGCCG TERM 2530 2446905 - 2446924 + T 93 -12.8 -4.30719 | opp_overlap 2446905 TAGGCGTGGCGACAA GGGGGGCC TCCG GGCTCCCC TTTCTTGTAGGGCCG TM1040_2327 2448393 - 2446978 - | FAD linked oxidase-like TM1040_2328 2449051 - 2448461 - | GCN5-related N-acetyltransferase TERM 2531 2448991 - 2449024 + g 77 -11.7 -3.57144 | gap 1 GGAAATCGGCATGCA CGGGAGGGCGGAGCGT CAG GCGCTCCGTC-TCCAG TTTCACCGTCCGCCG TM1040_2329 2450313 - 2449051 - | peptidase TERM 2532 2450260 - 2450227 - G 72 -13.2 -2.64155 | gap 1, opp_overlap 2450229, overlap 2450224 2450223 CCCTGCCGAAACCCA GATGCCGAGGGCTGC GGATT GCAGCCC-CGGCATA TACTCGGTGACAATA TERM 2533 2450229 - 2450258 + g 79 -16.5 -2.80816 | gap 1, opp_overlap 2450227 2450224 2450223 CTGCCGAAACCCAGA TGCCGAGGGCTGCG GAT TGCAGCCC-CGGCA TATACTCGGTGACAA TM1040_2330 2451701 - 2450310 - | threonine synthase TM1040_2331 2452378 - 2451716 - | SURF1 family protein TERM 2534 2451764 - 2451746 - G 79 -8.8 -4.21607 | CGTACGCAAGAGAAA GGCGGC GGTCATG GCCGCC CATATGAGGGCGAGC TERM 2535 2452478 - 2452434 - R 71 -7.8 -4.07687 | gap 1, opp_overlap 2452440, overlap 2452421 2452436 2452441 AGGCCTGCCGCAAAA CAGGCAA-GAGGCGCGCGAGG TGAT CCCCGCGCGCCCCGTTAGATA CGTGCTGATTGCCGA TERM 2536 2452440 - 2452471 + r 75 -12.8 -3.08464 | opp_overlap 2452436 2452434 2452441 GCCGCAAAACAGGCA AGAGGCGCGCGAGG TGAT CCCCGCGCGCCCCG TTAGATACGTGCTGA TERM 2537 2452470 - 2452441 - R 100 -20.7 -3.28785 | opp_overlap 2452440, overlap 2452436 2452434 CCGCAAAACAGGCAA GAGGCGCGCGAGG TGAT CCCCGCGCGCCCC GTTAGATACGTGCTG TM1040_2332 2453345 - 2452530 - | cytochrome c oxidase, subunit III TM1040_2333 2453958 - 2453371 - | cytochrome C oxidase assembly protein TM1040_2334 2454124 - 2453963 - | hypothetical protein TM1040_2335 2455067 - 2454126 - | protoheme IX farnesyltransferase TERM 2538 2455090 - 2455118 + r 77 -12.4 -3.29947 | opp_overlap 2455105, overlap 2455093 GCTCTTTCAGGTCAT GGACGACCACGC AAAGC GCGTGGTCGCTC TTGGTCTCATCCGTC TERM 2539 2455093 - 2455115 + r 80 -14.9 -2.52519 | opp_overlap 2455105, overlap 2455090 CTTTCAGGTCATGGA CGACCACGC AAAGC GCGTGGTCG CTCTTGGTCTCATCC TM1040_2336 2456100 - 2455186 - | cytochrome c oxidase, subunit II TM1040_2337 2456281 - 2457702 + | microcin-processing peptidase 2 TERM 2540 2457757 - 2457728 - f 93 -16.5 -3.494 | overlap 2457729 GAATCCGTGACACAA GTGATCTGGCGCG ACAC CGCGCCAGATCAG TCGACAAATAGGACG TERM 2541 2457756 - 2457729 - f 95 -20 -2.69319 | overlap 2457728 AATCCGTGACACAAG TGATCTGGCGCG ACAC CGCGCCAGATCA GTCGACAAATAGGAC TERM 2542 2457800 - 2457766 - f 77 -10 -3.90586 | opp_overlap 2457769, overlap 2457757 2457768 2457769 2457771 AGATCAGTCGACAAA TAGGACGACTCGCAGA TAC TCTGGGAGTCGTCTTT TCTTTTCAGGGCTCT TERM 2543 2457798 - 2457768 - f 79 -12.6 -3.54 | opp_overlap 2457769, overlap 2457757 2457766 2457769 2457771 ATCAGTCGACAAATA GGACGACTCGCAGA TAC TCTGGGAGTCGTCT TTTCTTTTCAGGGCT TERM 2544 2457797 - 2457769 - f 82 -16.1 -2.71918 | opp_overlap 2457769, overlap 2457757 2457768 2457766 2457771 TCAGTCGACAAATAG GACGACTCGCAGA TAC TCTGGGAGTCGTC TTTTCTTTTCAGGGC TERM 2545 2457769 - 2457797 + F 100 -16.1 -5.07652 | opp_overlap 2457757 2457768 2457766 2457769 2457771 TCAGTCGACAAATAG GACGACTCGCAGA TAC TCTGGGAGTCGTC TTTTCTTTTCAGGGC TERM 2546 2457795 - 2457771 - f 75 -12.9 -2.90065 | opp_overlap 2457769, overlap 2457757 2457769 2457768 2457766 AGTCGACAAATAGGA CGACTCGCAGA TAC TCTGGGAGTCG TCTTTTCTTTTCAGG TERM 2547 2458159 - 2458190 + G 76 -7.2 -4.43859 | overlap 2458160 ATTCCTGGCTTCGCC TGTTGCGCTCCCGA GGCA TCGGGACCGTGACC TTTTATCGGCTTCTG TERM 2548 2458258 - 2458241 - g 71 -8.4 -4.08692 | GAATGTGCTTGAAAA GCTGCC TGAATT GGCAGC GACTTCAGGCGTCAA TERM 2549 2458351 - 2458322 - g 76 -12.2 -3.31144 | opp_overlap 2458324 2458329, overlap 2458329 2458331 CGCCGAGTTCGAGAA CGCAAAAGCCGC CAATGC GCGGCTTTTGTG CATTGGAGATCCCCA TERM 2550 2458324 - 2458349 + G 72 -13.4 -2.53263 | opp_overlap 2458322 2458329 2458331, overlap 2458329 CCGAGTTCGAGAACG CAAAAGCCGC CAATGC GCGGCTTTTG TGCATTGGAGATCCC TERM 2551 2458329 - 2458344 + G 76 -7.5 -4.4715 | opp_overlap 2458322 2458329 2458331, overlap 2458324 TTCGAGAACGCAAAA GCCGC CAATGC GCGGC TTTTGTGCATTGGAG TERM 2552 2458344 - 2458329 - g 74 -7.5 -4.3208 | opp_overlap 2458329 2458324, overlap 2458322 2458331 TTCGAGAACGCAAAA GCCGC CAATGC GCGGC TTTTGTGCATTGGAG TERM 2553 2458687 - 2458657 - g 78 -13.2 -3.21395 | overlap 2458655 ATCCCTCTGAGAACA CCCCGCTCGCCATG ACC CTTGCCGAGCAGGG TCTGCGCCTCTCCGA TERM 2554 2459167 - 2459126 - g 73 -13.7 -2.78547 | gap 1, overlap 2459123 CCAGTTGATCAAGGA TCTCGGCAGCCCCGCACGCA AGG TGCGCACGGTGCTGACG-GA CTTGGAGCTATCCGG TM1040_2338 2458080 - 2459228 + | DNA processing protein DprA, putative TERM 2555 2460552 - 2460598 + G 71 -8.7 -3.80114 | gap 2, opp_overlap 2460562 2460565, overlap 2460553 2460590 CAGTGGACATCGGCT C-TGACGACAAG-CAGGTGGTGC TGC GCGCCACCGGTCAGGTCGTCATG TTTGATGGCTTCATG TERM 2556 2460553 - 2460596 + G 79 -12.4 -3.48105 | gap 1, opp_overlap 2460562 2460565, overlap 2460552 2460590 AGTGGACATCGGCTC TGACGACAAG-CAGGTGGTGC TGC GCGCCACCGGTCAGGTCGTCA TGTTTGATGGCTTCA TERM 2557 2461321 - 2461302 - g 70 -12.8 -2.93991 | opp_overlap 2461311 2461312 CCGAATGCAACTATA CCCGCCCG ATCT CGGGCGAG GGCGCCGAAGGTTAT TERM 2558 2461939 - 2461925 - g 78 -4.2 -4.8622 | overlap 2461927 CTTCTGAATGAAAAA GCCG CCAAATC CGGC AAGAAAAAAGCGCCC TM1040_2339 2459369 - 2462050 + | DNA topoisomerase I TERM 2559 2462040 - 2462027 - f 89 -8.1 -4.85782 | overlap 2462029 2462030 CCCGCCAAAAAGAAA GAGGC CAAA GCCTC TGGCGATTAACCGCA TERM 2560 2462118 - 2462137 + F 100 -16.4 -4.27886 | TCCCGTTGGGACCAG CGCCGCGC TTTC GCGCGGCG TTTGTGTATTTCGAC TERM 2561 2462218 - 2462233 + F 79 -11.8 -3.61178 | opp_overlap 2462217 2462214 TCCCGCCAAAAGCAC GGGGCC CTTT GGCCCC TTTGGCATGGGTAGA TM1040_2340 2462335 - 2463039 + | 3-oxoacid CoA-transferase, subunit A TM1040_2341 2463043 - 2463669 + | butyryl-CoA:acetate CoA transferase TERM 2562 2463738 - 2463691 - T 100 -32.9 -3.57144 | gap 2 GCGCTCAGTGTGAAA CGTTGGGCGGGGGCGCGGAGGGC AGAA GCCCTCCGCGCCCCCGCCC--CG ATCAGATCGCAGAGC TM1040_2342 2464684 - 2463866 - | lytic transglycosylase, catalytic TERM 2563 2464089 - 2464068 - G 70 -5.1 -4.57569 | GGATCTCCCGAAAAA TCCCGCATC AACT GATCCAGGA ACCGAACGCCGCCTG TM1040_2343 2465040 - 2465225 + | hypothetical protein TERM 2564 2465303 - 2465262 - f 75 -11.6 -3.49475 | gap 1, opp_overlap 2465271 2465298, overlap 2465263 TTTAGCCTGACAGAA TGC-CGTCCCGGGCCGT GCCATGCTT ACGGCCCGGGACATGCC ATTGCGGCACGTTCG TERM 2565 2465302 - 2465263 - f 80 -15.1 -2.69471 | gap 1, opp_overlap 2465271 2465298, overlap 2465262 TTAGCCTGACAGAAT GC-CGTCCCGGGCCGT GCCATGCTT ACGGCCCGGGACATGC CATTGCGGCACGTTC TM1040_2344 2465332 - 2465526 + | hypothetical protein TERM 2566 2465801 - 2465771 - g 78 -14.1 -3.14132 | gap 1, opp_overlap 2465767, overlap 2465755 GCTCTGGCCCAGGAA CGGTCG-AACCGCG ATGC CGCAGTTCCGACCG TAAACGTCTTTGTGG TM1040_2345 2465660 - 2466523 + | Flp pilus assembly CpaB TERM 2567 2466548 - 2466591 + F 88 -15.4 -3.39327 | gap 1, opp_overlap 2466544 2466542 2466540 2466553 2466554, overlap 2466555 AAATAAACAGACAGT TAGAACGGGCCCGC-GGATCA ATC TGATCCTGCGGGCCTCCTCTA TTGTGGCTCTGCCCC TERM 2568 2466586 - 2466553 - f 75 -11.7 -3.42241 | gap 1, opp_overlap 2466548 2466555, overlap 2466544 2466542 2466540 2466554 AACAGACAGTTAGAA CGGGCCCGC-GGATCA ATC TGATCCTGCGGGCCTC CTCTATTGTGGCTCT TERM 2569 2466585 - 2466554 - f 80 -15.2 -2.64622 | gap 1, opp_overlap 2466548 2466555, overlap 2466553 2466544 2466542 2466540 ACAGACAGTTAGAAC GGGCCCGC-GGATCA ATC TGATCCTGCGGGCCT CCTCTATTGTGGCTC TERM 2570 2466555 - 2466584 + F 93 -18.7 -2.78793 | gap 1, opp_overlap 2466554 2466553 2466544 2466542 2466540, overlap 2466548 CAGACAGTTAGAACG GGCCCGC-GGATCA ATC TGATCCTGCGGGCC TCCTCTATTGTGGCT TM1040_2346 2466653 - 2468146 + | type II and III secretion system protein TERM 2571 2468312 - 2468331 + G 71 -8.6 -4.07687 | gap 1 GGTGATCGCAGCTAC CGGGT-GCA ACT TGCCACCCG TTTTGCCAACGAAGT TM1040_2347 2468168 - 2468791 + | OmpA/MotB TERM 2572 2468852 - 2468820 - f 75 -9.1 -4.03234 | CGGGCCTGAGACAAA TGAGCTGCGCGCC GATTTCA GGCGGGCAGTTCA CCGCCTGCCAAAGCG TERM 2573 2470241 - 2470227 - g 78 -10 -3.90112 | CTCTGCGCAAGGAAA TCGCCA AGC TGGCGA AGAACCTGCATGAGC TM1040_2348 2469041 - 2470285 + | response regulator receiver protein TERM 2574 2470349 - 2470338 - g 75 -2.2 -4.98255 | overlap 2470343 TTCCAAGTACAAAAA GCAA TCCT CTGC GCCTGCTGCCCCCGC TM1040_2349 2470318 - 2471775 + | type II secretion system protein E TM1040_2350 2471775 - 2472743 + | type II secretion system protein TM1040_2351 2472754 - 2473725 + | type II secretion system protein TERM 2575 2473782 - 2473822 + G 100 -25 -3.53012 | gap 1 CCGCCTTGTTTCACC CACA-GCCGCCATCAGTGC CCTT GCACTGATGGCGGCATGTG TTTCGGGACAGGGAC TM1040_2352 2473735 - 2474340 + | tetratricopeptide TPR_2 TM1040_2353 2474374 - 2475225 + | tetratricopeptide region TM1040_2354 2475241 - 2475738 + | hypothetical protein TERM 2576 2475876 - 2475856 - f 73 -8.9 -3.92324 | overlap 2475857 CTTTCCAAGATCAAA CGTGACGGC ATC GCCGTCCCA ACCCGCGTGAAAAGA TM1040_2355 2475902 - 2477209 + | hypothetical protein TERM 2577 2477271 - 2477235 - T 77 -13.8 -3.04894 | gap 1, opp_overlap 2477240, overlap 2477240 AACGCCCTGCAAAAC CAAAAGGCGCCGGAGGC AACA GCC-CCGACGCCTTTTT CATCTTTTCAAAAAT TERM 2578 2477266 - 2477240 - T 95 -13.7 -4.67038 | gap 1, opp_overlap 2477240, overlap 2477235 CCTGCAAAACCAAAA GGCGCCGGAGGC AACA GCC-CCGACGCC TTTTTCATCTTTTCA TERM 2579 2477240 - 2477266 + T 100 -11.5 -4.98616 | gap 1, opp_overlap 2477240 2477235 CCTGCAAAACCAAAA GGCGCCGGAGGC AACA GCC-CCGACGCC TTTTTCATCTTTTCA TM1040_2356 2478224 - 2477322 - | methenyltetrahydrofolate cyclohydrolase TM1040_2357 2478574 - 2478269 - | chorismate mutase TERM 2580 2478625 - 2478588 - R 95 -13.3 -4.25283 | opp_overlap 2478582 2478617, overlap 2478589 ATCTCTCTATCAAAA CTCCTACGGCCCGAGGC ATAT GCCCCGGGCCGCAGATT GCCGATTTCGTGCCT TERM 2581 2478624 - 2478589 - R 88 -16.8 -3.14848 | opp_overlap 2478582 2478617, overlap 2478588 TCTCTCTATCAAAAC TCCTACGGCCCGAGGC ATAT GCCCCGGGCCGCAGAT TGCCGATTTCGTGCC TM1040_2358 2480316 - 2478640 - | formate--tetrahydrofolate ligase TM1040_2359 2481074 - 2480493 - | MOSC domain-containing protein TERM 2582 2480590 - 2480611 + g 74 -6.5 -4.35524 | gap 1, opp_overlap 2480581, overlap 2480560 2480588 ACCCAAGCGGTCACG CCGC-GGCGA TTT TCGGCGGCGG TTTTAAATTTCGGGC TM1040_2360 2481845 - 2481123 - | hypothetical protein TERM 2583 2481584 - 2481570 - G 81 -5.6 -4.79826 | overlap 2481573 ACACAGTAGGAAAAA CAGCGC GGA GAGCTG CCACTGGGTGCGCAG TERM 2584 2481989 - 2481971 - R 100 -13.8 -5.71712 | opp_overlap 2481971 CGGCATATAAAAAAA GCCGCGGC AGA ACCGCGGC TTTTCGTAATTCTTA TERM 2585 2481971 - 2481989 + r 95 -13.1 -4.39133 | opp_overlap 2481971 CGGCATATAAAAAAA GCCGCGG CAGAA CCGCGGC TTTTCGTAATTCTTA TM1040_2361 2483926 - 2482013 - | ATP-dependent metalloprotease FtsH TERM 2586 2482669 - 2482691 + g 70 -4.2 -4.51174 | gap 1, opp_overlap 2482660, overlap 2482672 GACCAACCACAGCGT GACCTGCCT CGTGAT AGGCAG-TC TTTTCCTTCTGATCG TERM 2587 2483609 - 2483641 + g 72 -2 -4.82901 | gap 1 GAACGGCAGAAGCGT CAGCAGGAA-GGACT GGAA GGTCGATTGCTGCTG TTTTTCTGCGCGCAC TM1040_2362 2485308 - 2484016 - | tRNA(Ile)-lysidine synthetase-like TERM 2588 2484452 - 2484475 + g 84 -11.6 -4.03413 | opp_overlap 2484444 2484447 2484446 TCGAGAACAGGCGCC CGGCGCGGCG GGTA TGCGGCGCCG TTTGTGTGCAGAAGT TM1040_2363 2486150 - 2485299 - | tetratricopeptide TPR_2 TM1040_2364 2486659 - 2486156 - | OmpA/MotB TERM 2589 2486541 - 2486514 - G 78 -9.8 -3.90744 | gap 1, overlap 2486517 GCCTCGCGGAAATAA GCAGGGCTCGAGG GGT CCCCGAGTCC-GC CGTCCACTCCGATAC tolB 2488088 - 2486763 - | translocation protein TolB TERM 2590 2487515 - 2487540 + g 73 -10.5 -3.61894 | opp_overlap 2487515, overlap 2487518 CCCCATCGTAATCCA TGATCGCAAGG CGCT TCTTGCGGTCA TTCTTGGGGCCGGTT TM1040_2366 2489236 - 2488085 - | TonB domain-containing protein TERM 2591 2488934 - 2488953 + g 73 -10 -3.64703 | gap 1, overlap 2488919 2488941 CGCGGGAGGCTCTGC CGCCGTGTC TGC GAC-CGGCG TTTCAATCGGCGCAG TM1040_2367 2489738 - 2489250 - | biopolymer transport protein ExbD/TolR TM1040_2368 2490437 - 2489742 - | MotA/TolQ/ExbB proton channel TM1040_2369 2490938 - 2490552 - | 4-hydroxybenzoyl-CoA thioesterase TM1040_2370 2491600 - 2490935 - | hypothetical protein TERM 2592 2491699 - 2491723 + r 70 -11.3 -2.89177 | overlap 2491694 2491695 CTCCCCTGGAGCGGC CCTCTGCGCGC TTG GCTCGCGGGGG TATCGTCTCTGCAAT ruvB 2492856 - 2491837 - | Holliday junction DNA helicase B TERM 2593 2492219 - 2492275 + g 73 -10.8 -3.60296 | gap 2 GGGGTGCCGCGCGCG CGCCGCGCGATCTCACGCGCGCCTGC GTCATCG GCGGGCGCGCCC-AGTTTGCGCG-CG TTTCGGCTGACAATC TERM 2594 2492802 - 2492773 - G 75 -7.7 -4.15044 | gap 1, opp_overlap 2492766 2492778, overlap 2492777 GGCCTGGCCAATAAA CTCACCCAG-GCCC TGC GGGCGCAGGGCGCG ATCATTGTCTTCGGG ruvA 2493557 - 2492868 - | Holliday junction DNA helicase motor protein TERM 2595 2493006 - 2493042 + g 100 -17.1 -3.54935 | overlap 2493007 2493025 GCCCAATGCCGACAG TGCCCCCGCCGAAGCGG CTG CCGCGCCGGTGGGGGCC TTTGGGGCGGCTTTG TERM 2596 2493007 - 2493041 + g 95 -20.6 -2.7264 | overlap 2493006 2493025 CCCAATGCCGACAGT GCCCCCGCCGAAGCGG CTG CCGCGCCGGTGGGGGC CTTTGGGGCGGCTTT TERM 2597 2493025 - 2493053 + g 70 -10.1 -3.53343 | overlap 2493007 2493006 CCCGCCGAAGCGGCT GCCGCGCCGGTGG GGG CCTTTGGGGCGGC TTTGCGCGCAGGCTT ruvC 2494120 - 2493554 - | Holliday junction resolvase TERM 2598 2494203 - 2494188 - H 79 -8.2 -4.4767 | opp_overlap 2494188 2494187 2494189, overlap 2494189 GCACCTAGCACAAAA CGCCCC ATAC GGGGCA ATTTTTGAGACAAAT TERM 2599 2494476 - 2494489 + G 89 -4.5 -5.24129 | gap 1, overlap 2494476 2494477 ACCTCCGGCCTGATC G-GCCG TAT CGGCGC TTTTTTGTACACCAC TM1040_2374 2494425 - 2494643 + | hypothetical protein TERM 2600 2494748 - 2494707 - T 100 -16.6 -4.18401 | gap 1, opp_overlap 2494713, overlap 2494713 TCACACACCCCAAAA CGCAAACGCCGCG-CCCGG CCAAT CCGGGACGCGGCGTTTTTG CATGTGTAAATCGGC TERM 2601 2494713 - 2494742 + T 100 -18.6 -4.72846 | gap 1, opp_overlap 2494707 2494713 ACCCCAAAACGCAAA CGCCGCG-CCCGG CCAAT CCGGGACGCGGCG TTTTTGCATGTGTAA TERM 2602 2494742 - 2494713 - T 100 -18.6 -3.93061 | gap 1, opp_overlap 2494713, overlap 2494707 ACCCCAAAACGCAAA CGCCGCG-CCCGG CCAAT CCGGGACGCGGCG TTTTTGCATGTGTAA TM1040_2375 2495056 - 2494796 - | hypothetical protein TM1040_2376 2496125 - 2495256 - | 50S ribosomal protein L11P methyltransferase TERM 2603 2495855 - 2495835 - G 85 -3.2 -5.37043 | gap 1, overlap 2495780 ACCGTAGACAAAAAA GCGCCCAGC CTCC ACCGGG-GC AAGCTCGCGGCGTAC TERM 2604 2496161 - 2496149 - R 70 -10.5 -3.23456 | opp_overlap 2496147, overlap 2496147 CCAACGAAACATAGA GCGCG TCG CGCGC GGTTGATCAGCGCCT TM1040_2377 2497472 - 2496237 - | major facilitator transporter TM1040_2378 2499782 - 2497575 - | primosome assembly protein PriA TERM 2605 2498422 - 2498397 - G 78 -13.3 -3.14344 | opp_overlap 2498396 2498395 CAGGCGTTTCATGAA GCGATGCTCGA CCAT TCGCGCATCGC AATTGTCGCAGGCCA TERM 2606 2498512 - 2498501 - G 81 -5.8 -4.72497 | opp_overlap 2498508 GATTGAGGAACAAAA GCGA CTGT TCGC CCCGTTCGAGGCGCA TM1040_2379 2499963 - 2500616 + | putative translaldolase TERM 2607 2500644 - 2500665 + F 100 -13.7 -4.86731 | CCAAAACTGATTTTA TGGCGCCTC AAAC GGGGCGCCA TTTTCTTTGGGGGCA TM1040_2380 2500799 - 2501512 + | hypothetical protein xerC 2501509 - 2502444 + | site-specific tyrosine recombinase XerC TM1040_2382 2502569 - 2503261 + | CDP-diacylglycerol-choline O-phosphatidyltransferase TM1040_2383 2503459 - 2503764 + | hypothetical protein truA 2504660 - 2503881 - | tRNA pseudouridine synthase A TERM 2608 2504600 - 2504622 + g 76 -9.9 -3.71607 | gap 1 ACGGTTGGTCCTTCT GCCG-TTGCC AACC GGCAAACGGC TTTCCATGATATTCA TERM 2609 2504667 - 2504653 - G 74 -7 -4.3467 | ACTTTGAGAGCAAAA CGCGGC ATG GGCGCG GCCTAGCGCGCGACG TERM 2610 2505527 - 2505538 + G 71 -7.2 -4.19238 | overlap 2505516 TGCCGGGGGATCTCG CGGG CTCT CCCG TTTTGACATTCGCCC TERM 2611 2506029 - 2506066 + G 73 -8.9 -3.85698 | overlap 2506019 GGAGTTGCCCTGCGT GCGCGGCATTCTAGCCG ACAG CGGCAAGCCGGCTGCGC TTTATCCCGGCCGCC TM1040_2385 2504863 - 2506260 + | protein of unknown function DUF463, YcjX-like protein TM1040_2386 2506257 - 2506721 + | GCN5-related N-acetyltransferase TM1040_2387 2506718 - 2507698 + | hypothetical protein TM1040_2388 2508134 - 2507721 - | hypothetical protein TERM 2612 2509046 - 2509032 - g 78 -2.7 -5.0538 | CGCCAGTTGAAAAAA CCGCG CTGGC CGAGG CCGAGGTCGAATATC ileS 2508425 - 2511349 + | isoleucyl-tRNA synthetase TERM 2613 2511403 - 2511380 - T 100 -13.8 -5.20216 | opp_overlap 2511380 CAGATCATGAAAAAA CGCCCGGAGC AAAA GCTTCGGGCG TTTCTTGTTCAGTGG TERM 2614 2511380 - 2511403 + T 100 -16 -4.46854 | opp_overlap 2511380 CAGATCATGAAAAAA CGCCCGGAGC AAAA GCTTCGGGCG TTTCTTGTTCAGTGG TM1040_2390 2511881 - 2511432 - | hypothetical protein TERM 2615 2512193 - 2512205 + r 72 -4.1 -4.6971 | GCCCGTCACTCAAAA CAGGA TAT TTCTG TTTTCTTACAATTTG TERM 2616 2512617 - 2512588 - R 81 -13.6 -3.34398 | opp_overlap 2512581 2512593, overlap 2512593 CCGCCCCTCCAAACA GGAAAGCCCCCC AAGAGA GGGGGGCTTTGC AAGTTCGCTTTTTAA TERM 2617 2512612 - 2512593 - R 85 -12.1 -4.00532 | opp_overlap 2512581 2512593, overlap 2512588 CCTCCAAACAGGAAA GCCCCCC AAGAGA GGGGGGC TTTGCAAGTTCGCTT TERM 2618 2512593 - 2512612 + r 79 -12.1 -3.61536 | opp_overlap 2512593 2512588, overlap 2512581 CCTCCAAACAGGAAA GCCCCCC AAGAGA GGGGGGC TTTGCAAGTTCGCTT TM1040_2391 2515503 - 2512654 - | glycine dehydrogenase TERM 2619 2514376 - 2514390 + g 74 -11.4 -3.53012 | GTCGACTTTGAAGCC GGCCTC CTC GAGGCC TTTGGCCAGACGCAC TERM 2620 2515305 - 2515344 + g 70 -3.5 -4.58395 | gap 2, opp_overlap 2515305, overlap 2515308 2515309 GCATGTGAAACAGCA GCTCGCGCTCGGACATCGG GCGG CCAAAGTCC-AGCGCT-GC TTTTTGACGGATGGA TM1040_2392 2515989 - 2515630 - | glycine cleavage system H protein TM1040_2393 2517155 - 2516031 - | glycine cleavage system T protein TERM 2621 2516339 - 2516375 + g 100 -13.5 -4.65895 | opp_overlap 2516322 2516343, overlap 2516342 2516343 TCGCATCCGCACCGG GAAAGCCGCCCGCGCGG TCG CCACCCGGGCGGCGTAC TTTTTGGATCGCCCA TERM 2622 2516342 - 2516372 + g 78 -13.8 -3.26405 | opp_overlap 2516322 2516343, overlap 2516339 2516343 CATCCGCACCGGGAA AGCCGCCCGCGCGG TCG CCACCCGGGCGGCG TACTTTTTGGATCGC TERM 2623 2516343 - 2516371 + g 83 -17.3 -2.55361 | opp_overlap 2516322 2516343, overlap 2516342 2516339 ATCCGCACCGGGAAA GCCGCCCGCGCGG TCG CCACCCGGGCGGC GTACTTTTTGGATCG TERM 2624 2516371 - 2516343 - G 100 -19.5 -3.57263 | opp_overlap 2516343 2516342 2516339, overlap 2516322 ATCCGCACCGGGAAA GCCGCCCGCGCGG TCG CCACCCGGGCGGC GTACTTTTTGGATCG TM1040_2394 2517618 - 2518607 + | glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) TERM 2625 2518654 - 2518674 + F 76 -6.7 -4.52589 | overlap 2518655 TTCTCCTCTACATGG GCTCGACCC GGC GGGCCGAGG TTTTATGTCACCGGC TERM 2626 2518655 - 2518673 + F 70 -10.2 -3.31232 | overlap 2518654 TCTCCTCTACATGGG CTCGACCC GGC GGGCCGAG GTTTTATGTCACCGG TERM 2627 2519206 - 2519239 + G 74 -10.9 -3.53012 | gap 1 CGTCGTCACCCCCCT GCCCGCGGG-GGGGAC CGC GTCCCTGCCCGAAGGC TTTGCGACCGGCAAA TM1040_2395 2518778 - 2520610 + | surface antigen (D15) TM1040_2396 2520607 - 2524614 + | hypothetical protein TERM 2628 2525501 - 2525514 + G 71 -9.5 -3.72757 | TGTCGCGCAGGATGA GGCCG ATCG CGGCC TTCTATTCCGTTCTC TM1040_2397 2524618 - 2525616 + | glycosyl transferase family protein TM1040_2398 2526406 - 2525684 - | WecB/TagA/CpsF family glycosyl transferase TM1040_2399 2526578 - 2528044 + | hypothetical protein TERM 2629 2529325 - 2529344 + G 74 -7 -4.36914 | overlap 2529326 ATCGGTCATCTCGAT ACCGCCGC TGGC GTGGCGGG TTTTGTAAAAACCGC TERM 2630 2531037 - 2531056 + G 71 -8.6 -4.09685 | gap 1 AAACGACCTCGCGCT TGAGCC-GC ACA GCTGGCTCA TTTTCGAAGATACCA TERM 2631 2531495 - 2531463 - g 76 -9.3 -4.11216 | gap 2, overlap 2531464 GCCCTATCCTGAAAA GGCGATGATCTCCGG GCCTG CCGG-GATCATC-CC GCGCGAGATCCCAGG TERM 2632 2531802 - 2531827 + G 71 -6.1 -4.36914 | gap 1 TGCGGAACATCTGAT GCG-CACTTACG AGG CGCGAGTGACGC TTTTGTCGCGCGAAA TERM 2633 2534650 - 2534615 - g 81 -7.7 -4.63218 | overlap 2534617 2534640 2534642 TTCTTGGCAAGAAAA TC-CGCGATCTGCTGGC GGCA ACCAACAG-TCGCGCGA CCCGGCCTCACGACA TM1040_2400 2528233 - 2534685 + | beta-ketoacyl synthase TM1040_2401 2534689 - 2535711 + | glycosyl transferase family protein TERM 2634 2536282 - 2536314 + G 70 -4.1 -4.62984 | overlap 2536257 2536299 2536301 GCCCCGATGCGGCTG GCTTCTTGCGGTT TGACCGC AACCGCGACACGC TTTTGTGTCTGGTGC TERM 2635 2538420 - 2538468 + G 74 -11.6 -3.53761 | gap 1 GAAGAAGTCGCTTTC CCGCGCGCGGATG-GTGGCCAGC ATTC GGTGGTCACGCAACCACGCCCGG TTTCAGAGGAACTTG TERM 2636 2538804 - 2538792 - g 70 -10.5 -3.55444 | TTTCCAGCGTTCAAA CGCCC AAA GGGCG TCGACAATCCCTTTG TM1040_2402 2535708 - 2540267 + | amino acid adenylation TM1040_2403 2540264 - 2540974 + | 4'-phosphopantetheinyl transferase TM1040_2404 2540971 - 2541936 + | hypothetical protein TERM 2637 2542500 - 2542486 - g 77 -11.4 -3.65902 | opp_overlap 2542490 CGGACGCCATCGAAA CCGGCA CCG TGCCGG GGTTGAGTAGGATCA TERM 2638 2543971 - 2543949 - g 78 -13.4 -3.21912 | CTCGGAATGCAGGAA CAGGCGCCCA TGG TGCGCGCCTG GCTCGCTGACAGCCG TERM 2639 2544260 - 2544272 + G 76 -6.2 -4.59109 | GCTGGTCGATGATGA CGCG CTGAC CGCG TTTTTCACGCATCTG TM1040_2405 2541933 - 2544470 + | hypothetical protein TM1040_2406 2544467 - 2545309 + | glycosyl transferase family protein TM1040_2407 2546534 - 2545320 - | glycosyl transferase, group 1 TERM 2640 2546305 - 2546281 - G 82 -11.4 -3.92592 | gap 1, overlap 2546298 ATCGCCAACAGGAAA GCGCGCCAGCC GGAA AGC-GGCGCGC GCAGACCGCAAGCCA TERM 2641 2547626 - 2547608 - g 82 -9.5 -4.29738 | opp_overlap 2547607, overlap 2547618 2547620 TGAGAGTGACGAAAA CCGGCGC AAACA GCGCCAG CTTCGCTACGCGCTC TM1040_2408 2546676 - 2548091 + | polysaccharide biosynthesis protein TM1040_2409 2549374 - 2548100 - | lipopolysaccharide biosynthesis TM1040_2410 2550409 - 2549408 - | exopolysaccharide biosynthesis domain-containing protein TM1040_2411 2551463 - 2550750 - | undecaprenyl-phosphate galactosephosphotransferase TM1040_2412 2552994 - 2551834 - | AraC family transcriptional regulator TM1040_2413 2553324 - 2554130 + | 2-dehydro-3-deoxygalactonokinase, putative TM1040_2414 2554964 - 2554164 - | hypothetical protein TM1040_2415 2556198 - 2555077 - | putative RNA methylase TM1040_2416 2556474 - 2558207 + | extracellular solute-binding protein TERM 2642 2558288 - 2558330 + F 100 -12.6 -4.8622 | gap 1, overlap 2558268 GCCCGGCCCCACCTG CCCCGGCTGATTGGCCTGC TTTGAC GC-GGCCCGCCGGCCGGGG TTTTTCCTTCGACAC TM1040_2417 2558405 - 2559481 + | ABC transporter related TM1040_2418 2559491 - 2560564 + | ABC transporter related TM1040_2419 2560570 - 2561433 + | binding-protein-dependent transport systems inner membrane component TM1040_2420 2561445 - 2562242 + | binding-protein-dependent transport systems inner membrane component TM1040_2421 2562244 - 2562522 + | hypothetical protein TERM 2643 2562580 - 2562546 - f 91 -11.5 -4.35926 | gap 1, overlap 2562547 2562548 ACGGCAAAGTCAAAA CCGGTCCTGA-GGGCA CGTC TGCCCCTCAGGACCAC CCCAGCCCCAACAAA TERM 2644 2562579 - 2562547 - f 83 -15 -3.20832 | gap 1, overlap 2562546 2562548 CGGCAAAGTCAAAAC CGGTCCTGA-GGGCA CGTC TGCCCCTCAGGACCA CCCCAGCCCCAACAA TERM 2645 2562578 - 2562548 - f 85 -16.3 -2.52017 | gap 1, overlap 2562547 2562546 GGCAAAGTCAAAACC GGTCCTGA-GGGCA CGTC TGCCCCTCAGGACC ACCCCAGCCCCAACA TM1040_2422 2562766 - 2563215 + | CopY family transcriptional regulator TM1040_2423 2563205 - 2564347 + | peptidase M56, BlaR1 TM1040_2424 2565302 - 2564427 - | 3-hydroxybutyryl-CoA dehydrogenase TERM 2646 2565501 - 2565490 - g 74 -7.2 -4.30014 | opp_overlap 2565490 2565498, overlap 2565483 GCTATGAACTCAAAA GCGC TGAT GCGC TTGTGAGCGAGTTAT TERM 2647 2566001 - 2566017 + G 82 -11.5 -3.87104 | GGGACGCGTTGTTGA CGCGCTC GAC GGGCGCG TTGTTCTGCTGTGGA TM1040_2425 2565459 - 2566295 + | hypothetical protein TERM 2648 2566321 - 2566341 + T 100 -16.9 -4.13767 | opp_overlap 2566321 TCGCTCAAGAAAAAA GGCCCATGC GCT GCATGGGCC TTTTCAAATCCAAAG TERM 2649 2566341 - 2566321 - T 100 -16.9 -5.4505 | opp_overlap 2566321 TCGCTCAAGAAAAAA GGCCCATGC GCT GCATGGGCC TTTTCAAATCCAAAG TM1040_2426 2567295 - 2566366 - | electron transfer flavoprotein, alpha subunit TM1040_2427 2568053 - 2567295 - | electron transfer flavoprotein beta-subunit TM1040_2428 2568934 - 2568362 - | ATP:cob(I)alamin adenosyltransferase TM1040_2429 2569139 - 2568936 - | hypothetical protein TERM 2650 2569014 - 2569004 - G 75 -2.4 -4.94058 | opp_overlap 2569011 CGAACTGAAAGAAAA GCCG CAG CTGC ATCATCTTGTTGCCG TM1040_2430 2570041 - 2569211 - | short-chain dehydrogenase/reductase SDR TM1040_2431 2570755 - 2570072 - | SH3, type 3 TERM 2651 2570813 - 2570793 - H 74 -3.1 -4.90266 | overlap 2570795 GCTACGAACCAAAAA CAGCTCCGC TTG GCCCAGCCG ACAAAGCGACAGACC TERM 2652 2571262 - 2571275 + G 78 -2.3 -5.0538 | overlap 2571256 AGCCGATTGCGCCTG TCGTC ATCG GGCGG TTTTTTGAAATCGGC TERM 2653 2572231 - 2572251 + G 76 -6.1 -4.59773 | opp_overlap 2572211, overlap 2572233 CACCGGCTTGAAGTG CTCGATGGT TTC ATCATCGCG TTTTTGAACCTCGAC TERM 2654 2573224 - 2573205 - g 73 -9.2 -3.89695 | opp_overlap 2573211, overlap 2573207 CCTGCAGAAATACAA CATGGCGC GCGG GCGCCAGG GCGCGCTCGAACTTG TERM 2655 2573222 - 2573207 - g 70 -10.4 -3.53279 | opp_overlap 2573211, overlap 2573205 TGCAGAAATACAACA TGGCGC GCGG GCGCCA GGGCGCGCTCGAACT TM1040_2432 2571061 - 2573409 + | DNA topoisomerase IV subunit A TERM 2656 2573434 - 2573464 + F 81 -8.9 -4.41241 | gap 1, opp_overlap 2573434 2573433, overlap 2573438 2573440 ATTGCCGGAAAACAT GTG-GCCCCCGCGC AACC GCGCGAGGGTTCGC TTTTGTGCGGGTTTA TERM 2657 2573438 - 2573459 + F 79 -12.9 -3.41587 | opp_overlap 2573434 2573433, overlap 2573434 2573440 CCGGAAAACATGTGG CCCCCGCGC AACC GCGCGAGGG TTCGCTTTTGTGCGG TM1040_2433 2573544 - 2574128 + | hypothetical protein TERM 2658 2574119 - 2574104 - f 72 -6 -4.36931 | opp_overlap 2574108, overlap 2574105 GAACCCAGAGGAAAA TGCCGC TGTC GCGGCC AGCGAATAGCATGTT TERM 2659 2575372 - 2575394 + G 70 -10.4 -3.48924 | opp_overlap 2575345 CGCGATCCGCGAAGG CGGCCGCACC GTT GGCGCGGGCG TTGTGTCCAAGATCC TM1040_2434 2574242 - 2575417 + | elongation factor Tu TERM 2660 2575487 - 2575455 - T 70 -10.5 -3.36175 | opp_overlap 2575461, overlap 2575457 2575459 2575461 AATGGCGAGTGACAA TAGAGAGGGCCTCCC AAT GGGAGGCCCTTTTTT GTTGCGAGGCGCTGC TERM 2661 2575485 - 2575457 - T 78 -13.1 -3.24924 | opp_overlap 2575461, overlap 2575455 2575459 2575461 TGGCGAGTGACAATA GAGAGGGCCTCCC AAT GGGAGGCCCTTTT TTGTTGCGAGGCGCT TERM 2662 2575483 - 2575459 - T 85 -15.7 -3.18945 | opp_overlap 2575461, overlap 2575457 2575455 2575461 GCGAGTGACAATAGA GAGGGCCTCCC AAT GGGAGGCCCTT TTTTGTTGCGAGGCG TERM 2663 2575481 - 2575461 - T 90 -18.3 -3.15459 | opp_overlap 2575461, overlap 2575459 2575457 2575455 GAGTGACAATAGAGA GGGCCTCCC AAT GGGAGGCCC TTTTTTGTTGCGAGG TERM 2664 2575461 - 2575481 + T 100 -18.3 -5.4505 | opp_overlap 2575459 2575457 2575455 2575461 GAGTGACAATAGAGA GGGCCTCCC AAT GGGAGGCCC TTTTTTGTTGCGAGG TERM 2665 2576099 - 2576122 + T 71 -4.6 -4.56597 | AATACCGTTGGTAAA TTTTGCGATG TGAT CGTCGTAGAA TTTTTAAAAAAACGC TM1040_2435 2577612 - 2576659 - | hypothetical protein TM1040_2436 2577865 - 2577596 - | phosphotransferase system, HPr TM1040_2437 2578273 - 2577869 - | PTS system fructose subfamily IIA component TERM 2666 2578034 - 2578015 - G 73 -9.2 -3.9392 | TGGCACCGTAAAGAA TGCGCCGG TTCG CAGGCGCA CAGGCCCGCAGGCTG TM1040_2438 2579185 - 2578283 - | hypothetical protein TERM 2667 2578502 - 2578490 - GR 80 -3.3 -5.15634 | CACGCGATCAAAAAA GCCCT GAA AGCGC GCATCAGACATCACA TM1040_2439 2579645 - 2579157 - | Hpr(Ser) kinase/phosphatase TERM 2668 2579568 - 2579546 - GR 100 -17 -4.39166 | GGCCACAGAGCAAAA CGCCGCGCTC ATC GAGCGCGACG CAACTGGCGTGCAAT TM1040_2440 2581356 - 2579623 - | periplasmic sensor signal transduction histidine kinase TERM 2669 2579672 - 2579648 - G 89 -10.7 -4.48072 | overlap 2579649 2579652 AGACCGACCACAAAA CGAGCTCCGAG CGG CTCGGAGGTCA GATCCGCCTCGGTGG TERM 2670 2579671 - 2579649 - G 72 -12 -3.2812 | overlap 2579648 2579652 GACCGACCACAAAAC GAGCTCCGAG CGG CTCGGAGGTC AGATCCGCCTCGGTG TERM 2671 2581377 - 2581395 + r 100 -14.6 -4.05027 | opp_overlap 2581377 CATGTCTCCGCCAAA GACCCCGA AAG TCGGGGTC TTATTCTTCATTGTA TERM 2672 2581395 - 2581377 - R 85 -14.6 -3.53224 | opp_overlap 2581377 CATGTCTCCGCCAAA GACCCCGA AAG TCGGGGTC TTATTCTTCATTGTA TM1040_2441 2582097 - 2581396 - | two component transcriptional regulator TM1040_2442 2582496 - 2584094 + | phosphoenolpyruvate carboxykinase TERM 2673 2584153 - 2584115 - T 86 -7.4 -5.00616 | opp_overlap 2584121, overlap 2584121 GCTTCCCGCAAAAAA TACAAAGCCCTCTCCG TTCAATC CGGAGGGGGCTTTTTT GTGTTCCGCGATAAG TERM 2674 2584147 - 2584121 - T 93 -10.8 -4.64992 | opp_overlap 2584121, overlap 2584115 CGCAAAAAATACAAA GCCCTCTCCG TTCAATC CGGAGGGGGC TTTTTTGTGTTCCGC TERM 2675 2584121 - 2584147 + T 100 -13 -5.47159 | opp_overlap 2584121 2584115 CGCAAAAAATACAAA GCCCTCTCCG TTCAATC CGGAGGGGGC TTTTTTGTGTTCCGC TM1040_2443 2584895 - 2584215 - | lipolytic enzyme, G-D-S-L TM1040_2444 2586695 - 2584992 - | isovaleryl-CoA dehydrogenase TERM 2676 2585583 - 2585593 + g 81 -4.6 -5.00616 | overlap 2585563 GAAGGGGGTTTCATC CGTC CCC GGCG TTTTTTCCGCAAGGA TERM 2677 2587382 - 2587395 + G 73 -9.5 -3.93055 | overlap 2587376 TCAGGGCGTGATCTA CGGCC TTGG GGCCG TTGTCTTGTTCTTTG TERM 2678 2587437 - 2587450 + G 74 -3.1 -4.78752 | gap 1, overlap 2587419 2587435 TCTGGTGTGATGCGC GGCGAG ACC CT-GCC TTTTTCCATTCTGAT TM1040_2445 2586837 - 2587604 + | hypothetical protein TERM 2679 2588526 - 2588487 - g 71 -9.4 -3.79906 | gap 3, overlap 2588462 2588484 CGAGCCGGATAACAA GC-TC-GAG-GCGGACGGC ATCGA GCCGCCCGCGCTCTGACGC CCCTTGCTGTGGGGC TM1040_2446 2587609 - 2588523 + | cation diffusion facilitator family transporter TM1040_2447 2589110 - 2588565 - | NADPH-dependent FMN reductase TERM 2680 2589223 - 2589270 + r 77 -11.5 -3.57462 | gap 3, opp_overlap 2589234, overlap 2589229 2589231 2589233 2589234 CACATGGTGCCCCGA GGTACGCAA-A-A-GGCCGCGCTC TGG GAGCGCGGCCATATCTTGTGCACC TTTAGAAGTGCGATC TERM 2681 2589229 - 2589261 + r 77 -11.9 -3.3506 | opp_overlap 2589234, overlap 2589223 2589231 2589233 2589234 GTGCCCCGAGGTACG CAAAAGGCCGCGCTC TGG GAGCGCGGCCATATC TTGTGCACCTTTAGA TERM 2682 2589231 - 2589259 + r 83 -14.5 -3.24161 | opp_overlap 2589234, overlap 2589229 2589223 2589233 2589234 GCCCCGAGGTACGCA AAAGGCCGCGCTC TGG GAGCGCGGCCATA TCTTGTGCACCTTTA TERM 2683 2589233 - 2589257 + r 89 -17.1 -3.1789 | opp_overlap 2589234, overlap 2589231 2589229 2589223 2589234 CCCGAGGTACGCAAA AGGCCGCGCTC TGG GAGCGCGGCCA TATCTTGTGCACCTT TERM 2684 2589234 - 2589256 + r 100 -20.6 -2.50252 | opp_overlap 2589234, overlap 2589233 2589231 2589229 2589223 CCGAGGTACGCAAAA GGCCGCGCTC TGG GAGCGCGGCC ATATCTTGTGCACCT TERM 2685 2589256 - 2589234 - R 100 -20.6 -4.19817 | opp_overlap 2589234 2589233 2589231 2589229 2589223 CCGAGGTACGCAAAA GGCCGCGCTC TGG GAGCGCGGCC ATATCTTGTGCACCT TM1040_2448 2589949 - 2589284 - | OmpA/MotB TM1040_2449 2590827 - 2590138 - | helix-turn-helix, type 11 TERM 2686 2590274 - 2590258 - G 70 -10.1 -3.53012 | overlap 2590267 GCGCTCTGTGCGAAA GTGGCGA AAG CCGCCAC GCAACTCGCACCACG TM1040_2450 2592025 - 2591174 - | AraC family transcriptional regulator TERM 2687 2591325 - 2591360 + g 81 -14.1 -3.36327 | gap 1 CTGAGCGGATTCTTC CCCACG-GCCGTGC CAACGGCGC GCACGGCACGTGGG TTATCGATCGCCTCC TERM 2688 2591927 - 2591888 - G 93 -11.4 -4.43012 | gap 1, overlap 2591901 AGCCCAAGAGGAAAA GACGCGC-TGGAAATGCGC GGC GCTCATGCCCATGCGCGCC GCCAGCTCCTCCAGC TERM 2689 2591931 - 2591901 - G 74 -11.9 -3.54307 | gap 1, overlap 2591888 AAGACGCGCTGGAAA TGCGCGGCGCTCAT GCCC ATGCGCGCCGC-CA GCTCCTCCAGCGACA TERM 2690 2592167 - 2592181 + G 75 -2.8 -4.98531 | overlap 2592168 CAATGCGCCGCCCGC GGCAAA TGC TTTGCG TTTTTAATTTGCGCC TM1040_2451 2592128 - 2592871 + | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III TM1040_2452 2592868 - 2593860 + | PfkB TERM 2691 2594243 - 2594225 - g 81 -5.2 -5.00616 | opp_overlap 2594236, overlap 2594227 GTTTCGCTCAAAAAA CATGCGAA TTT CTCGCAAG CTGCCGCTGCTGTTT TM1040_2453 2594208 - 2596574 + | methyl-accepting chemotaxis sensory transducer TM1040_2454 2597144 - 2596656 - | MarR family transcriptional regulator TM1040_2455 2597317 - 2598135 + | hypothetical protein TM1040_2456 2598633 - 2598178 - | hypothetical protein TM1040_2457 2599207 - 2598701 - | NUDIX hydrolase TM1040_2458 2599378 - 2601405 + | 2,4-dienoyl-CoA reductase TM1040_2459 2602539 - 2601478 - | 2-nitropropane dioxygenase, NPD TERM 2692 2602338 - 2602328 - G 70 -4 -4.67048 | TGATGGCAAAAGAAA TTCA CAT TGAA GGGCCCATTGGTCAG TERM 2693 2602653 - 2602629 - R 100 -14.3 -5.24129 | opp_overlap 2602627 2602626 2602624 GGGTCGGAGAAAAAA GCCCCTCGC TTTTCGG GCGAGGGGC AAGTCTTTCGAGGGA TM1040_2460 2603624 - 2602719 - | LysR family transcriptional regulator TERM 2694 2603501 - 2603484 - G 73 -9.8 -3.61398 | overlap 2603485 GGTGCGGTTCAACAA GCGCGC GCCAAG GCGCGC TTCGAGACTGGACAC TM1040_2461 2603833 - 2604165 + | NIPSNAP domain-containing protein TM1040_2462 2604162 - 2604518 + | antibiotic biosynthesis monooxygenase TERM 2695 2604535 - 2604522 - f 76 -3.7 -4.96848 | overlap 2604529 CCCGGGACATAAAAA CGGAC AACT GACCG TCGGTCAGGAATGCA TERM 2696 2604543 - 2604529 - f 72 -10 -3.57767 | overlap 2604522 CATAAAAACGGACAA CTGACC GTC GGTCAG GAATGCATCACAGAT TM1040_2463 2604785 - 2605372 + | lysine exporter protein LysE/YggA TM1040_2464 2606438 - 2605380 - | OmpA/MotB TM1040_2465 2607031 - 2606459 - | hypothetical protein TM1040_2466 2607786 - 2607061 - | GCN5-related N-acetyltransferase TM1040_2467 2608505 - 2607783 - | molybdopterin binding domain-containing protein TERM 2697 2608975 - 2608985 + G 72 -2.4 -4.7254 | opp_overlap 2608975 AGTACGGGCAGAACA GCCG GAT CGAC TTTTTGCTGACGGAT TERM 2698 2609051 - 2609035 - g 89 -12.3 -4.13945 | ATGTCGAGGTCAAAA GCGTGAC ACT GTCACGC CAGCCGGGCCTTGCG TERM 2699 2609261 - 2609236 - g 88 -13.3 -3.57144 | gap 1, overlap 2609250 CTGCCGAGTTCGAAA CCGCCCA-CGCC AAA GGCGTTGAGCGG CTGGTGATCGGCACC TM1040_2468 2608608 - 2609324 + | sugar fermentation stimulation protein TERM 2700 2609379 - 2609334 - f 95 -11.2 -4.67234 | opp_overlap 2609336, overlap 2609336 2609374 AGCTAACCCCAAAAA GACGCCTCT-GTCGCGGAGCCG CGCG CAGC-CCTCGACCAGAGGCGTT TCGCCCAAGATCCGA TERM 2701 2609336 - 2609377 + F 75 -11.6 -3.53444 | opp_overlap 2609334 2609336 2609374 CTAACCCCAAAAAGA CGCCTCTG-TCGCGGAGCCG CGCG CAGC-CCTCGACCAGAGGCG TTTCGCCCAAGATCC TERM 2702 2609377 - 2609336 - f 93 -13.8 -3.94933 | opp_overlap 2609336, overlap 2609334 2609374 CTAACCCCAAAAAGA CGCCTCT-GTCGCGGAGCCG CGCG CAGC-CCTCGACCAGAGGCG TTTCGCCCAAGATCC TM1040_2469 2609508 - 2610323 + | methionine aminopeptidase, type I TERM 2703 2610371 - 2610318 - T 79 -10.9 -3.97947 | gap 1, overlap 2610321 CCGACGTACGACAAA GACTGACCCTGACGGGGCA-AGGGGC GCT GCCCCTCTGGCCCTTACGGGCCATTC ACCCCGGGATACTTG TERM 2704 2610424 - 2610405 - T 82 -13.6 -3.39948 | opp_overlap 2610405 2610420, overlap 2610400 TTAGAAGAAAGCCAA GCCTGCAC CCCA GTGCAGGC TTTTTTGTTGGCCTG TERM 2705 2610405 - 2610424 + T 100 -13.6 -5.46657 | opp_overlap 2610405 2610400, overlap 2610420 TTAGAAGAAAGCCAA GCCTGCAC CCCA GTGCAGGC TTTTTTGTTGGCCTG TM1040_2470 2611035 - 2610478 - | hypothetical protein TM1040_2471 2612243 - 2611032 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TM1040_2472 2612366 - 2612851 + | thiol peroxidase (atypical 2-Cys peroxiredoxin) TERM 2706 2612961 - 2613002 + G 73 -10.2 -3.57144 | gap 2, opp_overlap 2612965 2612969, overlap 2612969 GCCGAGGTACTGGAT GAAATCGACGCCGCGCGCAC CTTC GTG-GCGC-GCGACGATTCC TTTGACAGTGCACAG TERM 2707 2612998 - 2612965 - g 71 -9.6 -3.74872 | gap 2, opp_overlap 2612961 2612969, overlap 2612969 AGGTACTGGATGAAA TCGACGCCGCGCGCAC CTTC GTG-GCGC-GCGACGA TTCCTTTGACAGTGC TERM 2708 2612997 - 2612969 - g 76 -14.6 -2.67981 | gap 1, opp_overlap 2612961 2612969, overlap 2612965 ACTGGATGAAATCGA CGCCGCGCG-CAC CTTC GTGGCGCGCGACG ATTCCTTTGACAGTG TM1040_2473 2612901 - 2613770 + | hypothetical protein TM1040_2474 2614211 - 2613915 - | pterin-4-alpha-carbinolamine dehydratase TM1040_2475 2615395 - 2614208 - | hypothetical protein TM1040_2476 2616219 - 2615443 - | glycerophosphoryl diester phosphodiesterase TERM 2709 2616107 - 2616128 + g 74 -12.9 -3.21395 | overlap 2616105 2616105 TACCCCGCCGCGATT GCCGCGCGG ATGG CGGCGCGGC TGTTCTCGGGGCAAT TERM 2710 2616188 - 2616158 - G 79 -15.5 -2.73875 | overlap 2616155 TTTTCGTCAAGACCA TGCAGCGCTCGAT GCGTG ATCGGGCGCTGCA AAAAGGCCAAAGGCA TM1040_2477 2616689 - 2616228 - | endoribonuclease L-PSP TM1040_2478 2618123 - 2616801 - | Type I secretion membrane fusion protein, HlyD TERM 2711 2617249 - 2617229 - G 70 -12.5 -2.89881 | opp_overlap 2617229 CACTCATCCCATAGA CCACGCCCG AAA CAGGCGCGG TAATGTCCAGACGGC TERM 2712 2617348 - 2617381 + g 71 -9.6 -3.71873 | overlap 2617322 CGGGTGATGGCCTCC TCGCGGCGCTGA TTACGGAGCT TCAGCGCCTCGA TTTCGATCTCGGTGA TERM 2713 2617508 - 2617524 + g 74 -12.3 -3.19003 | overlap 2617499 2617515 2617518 2617520 GCGCAAGACCTCGAT CCAGCAG GGA CTGCTGG TTGCTGAGCTCTTCT TM1040_2479 2619883 - 2618120 - | Type I secretion system ATPase, PrtD TM1040_2480 2620035 - 2620835 + | VacJ-like lipoprotein TM1040_2481 2620839 - 2621429 + | toluene tolerance TERM 2714 2621481 - 2621452 - T 87 -12.1 -4.08279 | opp_overlap 2621453, overlap 2621453 AGACCTCATAAATAA GGCCCCGGAAGAG TGCG CTCTTTCGGGGCT TGTTGTTTGGCAATG TERM 2715 2621480 - 2621453 - T 83 -15.6 -3.04244 | opp_overlap 2621453, overlap 2621452 GACCTCATAAATAAG GCCCCGGAAGAG TGCG CTCTTTCGGGGC TTGTTGTTTGGCAAT TERM 2716 2621453 - 2621480 + T 100 -17.8 -4.08958 | opp_overlap 2621452 2621453 GACCTCATAAATAAG GCCCCGGAAGAG TGCG CTCTTTCGGGGC TTGTTGTTTGGCAAT smpB 2622037 - 2621561 - | SsrA-binding protein TM1040_2483 2622999 - 2622133 - | hypothetical protein TERM 2717 2622471 - 2622459 - G 74 -3.3 -4.81249 | opp_overlap 2622459 2622467 TTGCAAAGCCAAAAA GCCCA AGC TGTGC ATTGCTCATGGTTTT TM1040_2484 2623635 - 2623072 - | XRE family transcriptional regulator TERM 2718 2623746 - 2623693 - H 100 -12.6 -5.36441 | overlap 2623694 2623696 2623697 2623744 GGGCCATAGAAAAAA TGACTTGTGCGTTATAGCGCAC GAACTGTAGT GTGCGCTATAACGCACAACGCT TACCCCAGCCCTTGC TERM 2719 2623745 - 2623694 - H 100 -16.1 -3.81141 | overlap 2623693 2623696 2623697 2623744 GGCCATAGAAAAAAT GACTTGTGCGTTATAGCGCAC GAACTGTAGT GTGCGCTATAACGCACAACGC TTACCCCAGCCCTTG TERM 2720 2623743 - 2623696 - H 95 -17.3 -3.48081 | overlap 2623694 2623693 2623697 CCATAGAAAAAATGA CTTGTGCGTTATAGCGCAC GAACTGTAGT GTGCGCTATAACGCACAAC GCTTACCCCAGCCCT TERM 2721 2623742 - 2623697 - H 100 -20.8 -2.67764 | overlap 2623696 2623694 2623693 CATAGAAAAAATGAC TTGTGCGTTATAGCGCAC GAACTGTAGT GTGCGCTATAACGCACAA CGCTTACCCCAGCCC TM1040_2485 2623777 - 2624955 + | benzoate transporter TERM 2722 2626918 - 2626906 - g 73 -10.5 -3.65529 | ACATCTGCAGCCAAA GGCGC TGT GCGCC AACTGCCAGACGACG TM1040_2486 2625094 - 2626938 + | dihydroxy-acid dehydratase TERM 2723 2626964 - 2626991 + T 100 -13.5 -5.15969 | gap 1, opp_overlap 2626964 TGATCGCAACGCAAA GGCCCCTCAAGC GCAAG GCT-GAGGGGCC TTTTTTACCTTCGGA TERM 2724 2626991 - 2626964 - T 88 -13.5 -3.76125 | gap 1, opp_overlap 2626964 TGATCGCAACGCAAA GGCCCCTCAAGC GCAAG GCT-GAGGGGCC TTTTTTACCTTCGGA TERM 2725 2627093 - 2627063 - T 71 -8.9 -3.85698 | gap 1, overlap 2627064 TTTGTTTTCCAGAAA GCGCAG-GCCGGGC ACGC GCCCGGCGCTCGGC CCAACTGGATCAGAT TM1040_2487 2627978 - 2627160 - | hypothetical protein TERM 2726 2628382 - 2628392 + G 78 -2.4 -5.02502 | GTCGACGAGTTCCCG CGCG CAA CGCA TTTTTATATGCTGTC TERM 2727 2628816 - 2628834 + G 77 -3.1 -4.87626 | TCCTGAAGATGAGAT CGAAAGT CGCAC ACTTACG TTTTTAATGTTCAGC TERM 2728 2629547 - 2629559 + G 74 -6.9 -4.386 | opp_overlap 2629547 2629548, overlap 2629548 ATGAAATTGACCAAA TCCGC GAT GCGGG TTTTGTGCGCCATTG TERM 2729 2629593 - 2629618 + G 77 -11.1 -3.65426 | GGTCGCGGAACGCGG CCCCGAGAGCG ACAA CGCTCTTGCGG TTTCACAGTTTCTGG TM1040_2488 2628115 - 2629692 + | glycosyl transferase family protein TM1040_2489 2630507 - 2629773 - | hypothetical protein TM1040_2490 2631304 - 2630666 - | hypothetical protein TERM 2730 2631410 - 2631459 + r 79 -8.3 -4.386 | opp_overlap 2631407 2631437 AGCCCGAGATCAGGG CTCAGCACCGGCCCGCGTTGGAT GCAA GTCCCGCGCGCGCCGGTCAAGGG TTTTATCAGGGATTA TM1040_2491 2632680 - 2631472 - | creatinase TM1040_2492 2633645 - 2632860 - | putative esterase/lipase/thioesterase TERM 2731 2633015 - 2632995 - G 75 -8.1 -4.24342 | opp_overlap 2633014, overlap 2632996 CGCCTGATCAAGAAA TGCGGGCCG CTC CGCCCCGCC GACCCAGACGGTCAC TERM 2732 2633469 - 2633454 - G 71 -5.4 -4.40605 | gap 1, opp_overlap 2633457, overlap 2633456 2633457 ATGCACAAAGACAAA CAGCCCC ACG GGGG-TG CCTTCGGGCAGGAAC TERM 2733 2634267 - 2634297 + G 82 -11.8 -3.85698 | opp_overlap 2634271 CATGATCACCCGCAA GGCAGGGCCGGC ACTGGCG GCCGGCTGTGCC TTTGTGGCGCGCCCG TM1040_2493 2633749 - 2635221 + | succinate semialdehyde dehydrogenase TM1040_2494 2635676 - 2635245 - | globin TM1040_2495 2635844 - 2638015 + | hypothetical protein TERM 2734 2638075 - 2638094 + F 91 -9.2 -5.1615 | opp_overlap 2638075 TCGCCGCACAGCAAA GGGGTCCC TAGC GGGGCCTC TTTTTTGCATCTTAC TERM 2735 2638113 - 2638135 + F 82 -6.2 -4.87133 | TTTGCATCTTACGTC GCGCGCAATT CGC AGCTGCGTGC TTTTCTTTGCACAAT TM1040_2496 2638410 - 2639303 + | hypothetical protein TM1040_2497 2639888 - 2639283 - | TetR family transcriptional regulator TERM 2736 2639990 - 2639963 - R 100 -13.4 -5.14163 | ATCCATGAATAAAAA GAGCTCCCGTCT AACC AGCCGGGAGCCC TCGGAATAGGACGCA TM1040_2498 2640492 - 2640025 - | heat shock protein Hsp20 TM1040_2499 2641487 - 2640633 - | peptidase S1 and S6, chymotrypsin/Hap TERM 2737 2641024 - 2640991 - G 88 -19.5 -2.87468 | opp_overlap 2640991 GCGTAGGACACCACA CCGACCCGGGCCCCC TCGC GGGGGCGCGCGTCGG TTTCAAATGGCGTGA TERM 2738 2640991 - 2641024 + g 100 -19.5 -3.60627 | opp_overlap 2640991 GCGTAGGACACCACA CCGACCCGGGCCCCC TCGC GGGGGCGCGCGTCGG TTTCAAATGGCGTGA TM1040_2500 2642899 - 2641580 - | protein of unknown function DUF224, cysteine-rich region TM1040_2501 2643995 - 2642904 - | FAD linked oxidase-like TERM 2739 2643446 - 2643469 + g 74 -7.4 -4.32857 | gap 1, overlap 2643447 CCCCCTCTGGCAGAT CCACACCCCGC ACC GCGAG-TGTGG TTTGTGTTTCCGCGC TERM 2740 2644028 - 2644046 + r 77 -11.6 -3.62096 | overlap 2644029 ATTATCCTTGGGGGT TCGGGGGC AAC GCCCCCGC TTTGAGCTACTGCGC TERM 2741 2644029 - 2644045 + r 81 -15.1 -2.77043 | overlap 2644028 TTATCCTTGGGGGTT CGGGGGC AAC GCCCCCG CTTTGAGCTACTGCG TM1040_2502 2645501 - 2644053 - | D-lactate dehydrogenase (cytochrome) TM1040_2503 2645583 - 2646305 + | hypothetical protein TERM 2742 2646369 - 2646385 + G 71 -9.4 -3.73953 | TCCTGATCCCGTTCT TGGGCC TGGCC GGCCCA TTTGCTGCCCATGCT TM1040_2504 2646341 - 2646700 + | hypothetical protein TM1040_2505 2647176 - 2646706 - | hypothetical protein TERM 2743 2646834 - 2646824 - G 72 -2.4 -4.83759 | overlap 2646817 2646825 2646826 AAGGAAATCGAAAAA TCCG CTT CGGC GCGCAACGAGGGGTC TM1040_2506 2647665 - 2647306 - | Iojap-related protein TM1040_2507 2649223 - 2647796 - | MscS mechanosensitive ion channel TM1040_2508 2649508 - 2650911 + | isopropylmalate isomerase large subunit leuD 2650924 - 2651529 + | isopropylmalate isomerase small subunit TERM 2744 2651583 - 2651552 - T 78 -14.5 -2.6583 | opp_overlap 2651552 2651557, overlap 2651557 GACATCTGAAAGTTA GAAAAGGCCGCCC TGAATG GGGCGGCCTTTTG TTTGGATAATGTGTT TERM 2745 2651552 - 2651583 + T 95 -15.2 -3.71265 | opp_overlap 2651552 2651557, overlap 2651557 GACATCTGAAAGTTA GAAAAGGCCGCCCT GAAT GGGGCGGCCTTTTG TTTGGATAATGTGTT TERM 2746 2651578 - 2651557 - T 100 -14.4 -4.51196 | opp_overlap 2651552 2651557, overlap 2651552 CTGAAAGTTAGAAAA GGCCGCCC TGAATG GGGCGGCC TTTTGTTTGGATAAT TERM 2747 2651557 - 2651578 + T 100 -15.1 -4.9138 | opp_overlap 2651557 2651552, overlap 2651552 CTGAAAGTTAGAAAA GGCCGCCCT GAAT GGGGCGGCC TTTTGTTTGGATAAT TM1040_2510 2651927 - 2651628 - | hypothetical protein TERM 2748 2651903 - 2651876 - G 93 -15.6 -3.60627 | TCATTCTACGCGAAA GCGCGGCACACC AGTC GATGTACCGCGC CAGATACAAGCCGAT TM1040_2511 2653001 - 2651928 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 2749 2653924 - 2653940 + G 75 -2.1 -4.91109 | overlap 2653919 CAGCAAGACACTGGT GCTTGTC GCA GCCGGGC TTTTTGTGATCGACC TM1040_2512 2653223 - 2654206 + | putative adenylate/guanylate cyclase TERM 2750 2654299 - 2654264 - T 86 -6.8 -5.01497 | opp_overlap 2654271 2654289, overlap 2654271 ATCAGGATATAAAAA CAAGAAACCCGCCGAA TTGC TTCGGCGGGTTCAATC CGTTTGGCTTCACCT TERM 2751 2654271 - 2654292 + T 85 -15.9 -3.11732 | opp_overlap 2654264 2654271, overlap 2654289 TATAAAAACAAGAAA CCCGCCGAA TTGC TTCGGCGGG TTCAATCCGTTTGGC TERM 2752 2654292 - 2654271 - T 100 -15.9 -4.80417 | opp_overlap 2654271 2654289, overlap 2654264 TATAAAAACAAGAAA CCCGCCGAA TTGC TTCGGCGGG TTCAATCCGTTTGGC rplT 2654685 - 2654320 - | 50S ribosomal protein L20 rpmI 2654901 - 2654701 - | 50S ribosomal protein L35 TM1040_2515 2655239 - 2655018 - | hypothetical protein TERM 2753 2655165 - 2655125 - G 72 -11.1 -3.30243 | opp_overlap 2655132, overlap 2655128 AGCCACCCCCTAGAA TCAGCATCGCCGCAGCC GTTATCG GGCTGCGGCGATGGGCA TAGGCTGCAAAGAAG TERM 2754 2655162 - 2655128 - G 84 -17.2 -2.8294 | opp_overlap 2655132, overlap 2655125 CACCCCCTAGAATCA GCATCGCCGCAGCC GTTATCG GGCTGCGGCGATGG GCATAGGCTGCAAAG TM1040_2516 2656721 - 2655276 - | pyruvate kinase TM1040_2517 2658073 - 2657069 - | zinc-binding alcohol dehydrogenase TM1040_2518 2658900 - 2658190 - | RpsU-divergently transcribed rpsU 2659018 - 2659224 + | 30S ribosomal protein S21 TERM 2755 2659303 - 2659269 - T 91 -15.9 -3.63073 | gap 1, opp_overlap 2659269, overlap 2659274 GATACTGTTTAAGAA TAAAACCCCCGCAGAC CTCG GTC-GCGGGGGTTTCA TTTTGTGGGCACCAC TERM 2756 2659269 - 2659303 + T 95 -13.7 -4.36914 | gap 1, opp_overlap 2659269 2659274 GATACTGTTTAAGAA TAAAACCCCCGCAGAC CTCG GTC-GCGGGGGTTTCA TTTTGTGGGCACCAC TERM 2757 2659298 - 2659274 - T 100 -13.6 -4.89477 | gap 1, opp_overlap 2659269, overlap 2659269 TGTTTAAGAATAAAA CCCCCGCAGAC CTCG GTC-GCGGGGG TTTCATTTTGTGGGC uvrC 2661277 - 2659370 - | excinuclease ABC subunit C TERM 2758 2660415 - 2660404 - G 71 -5.8 -4.36592 | CGCGAATAAAAAACA CCTG CACG CAGG CCAGCCCGTTTTCCA TERM 2759 2660844 - 2660855 + g 70 -3.6 -4.62069 | overlap 2660841 2660850 2660853 GCCTTCCCCTTGCGT GCGC CGCG GTGC TTTTTCAGCTGCGGA TM1040_2521 2662363 - 2661587 - | short chain dehydrogenase TM1040_2522 2663344 - 2662400 - | K+-dependent Na+/Ca+ exchanger related-protein TERM 2760 2663545 - 2663529 - R 71 -6.5 -4.24002 | CGTCAAAGGCCAAAA CGCGC AAACTGG GCGCG CTCCTCAACCGCTGC TM1040_2523 2664313 - 2663516 - | peptidase S49 TERM 2761 2663594 - 2663606 + g 72 -2.6 -4.7373 | GGACAGGCCAAACCG GCTC AGGAA GGGC TTTTTGATACCGTGG TM1040_2524 2665313 - 2664552 - | ABC-2 type transporter TM1040_2525 2666239 - 2665310 - | ABC transporter related TM1040_2526 2666982 - 2666437 - | carbon monoxide dehydrogenase subunit G TM1040_2527 2667184 - 2668305 + | L-carnitine dehydratase/bile acid-inducible protein F TM1040_2528 2669401 - 2668364 - | uroporphyrinogen decarboxylase TERM 2762 2669293 - 2669274 - G 70 -4.8 -4.46155 | opp_overlap 2669288, overlap 2669275 2669276 CATAGACTCAGAAAA TCCCCGGC CTGT GCCCGGGT CGCGCGGTATTCGGG hemC 2669522 - 2670478 + | porphobilinogen deaminase TM1040_2530 2671575 - 2670697 - | glycoside hydrolase family protein TERM 2763 2671054 - 2671012 - G 73 -9.7 -3.86015 | gap 1, overlap 2671013 GATCTTCTTGATAAA GCGCTCCGCCTCATGGCGCG CTTC CGCGCCA-GACGGGCGGCGC TTGCAACTCGGCGAC TERM 2764 2671097 - 2671113 + g 75 -7.9 -4.18164 | opp_overlap 2671096 TCAATATCCAGAACC GGGGGCA AAC TGCCCGC TTCTTTTGGGACATT TM1040_2531 2672599 - 2671697 - | coproporphyrinogen III oxidase TM1040_2532 2673442 - 2672639 - | short-chain dehydrogenase/reductase SDR TERM 2765 2673466 - 2673480 + r 71 -11.4 -3.06696 | overlap 2673468 GATCCTTGCTTGCAT CAGGCC TTG GGCCTG TGTCTTGGGCCAGGG TM1040_2533 2674592 - 2673606 - | methyltransferase small TERM 2766 2674022 - 2674044 + g 70 -3.3 -4.58395 | opp_overlap 2674022 2674024, overlap 2674024 CCCAGCCCGCACCAA GATCGGCCA CCTCT TTGCCGAGC TTTTTGGGCAGTGCC TERM 2767 2674313 - 2674295 - G 71 -5.8 -4.28994 | overlap 2674296 CACCATCGACCAAAA CCGGCCCC TGC GTGGCCGC GACAGCCTGCGCCAC TERM 2768 2674616 - 2674640 + r 70 -2.8 -4.68593 | gap 1, opp_overlap 2674618, overlap 2674614 ACCTTTCCCAGACCA GACGCGCAGAC GCGG GTCAGT-CGTC TTTTTCCATGGTGCA TM1040_2534 2674973 - 2674632 - | ATP-dependent Clp protease adaptor protein ClpS TM1040_2535 2675064 - 2675777 + | haloacid dehalogenase-like hydrolase TERM 2769 2676080 - 2676061 - f 78 -6.4 -4.73682 | GCTGACAAGACAAAA CGCCAGTT GGAA AACCAGCG GCACGAGGCAGACAT TERM 2770 2677354 - 2677336 - g 74 -12.4 -3.17075 | opp_overlap 2677335 GTCTCGGCAATCCAA CCTCAGGC GCG GCCCGAGG CTCTTCAGGCAGAGG TM1040_2536 2676295 - 2677785 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 2771 2677807 - 2677835 + T 100 -11 -4.8143 | opp_overlap 2677807 2677808, overlap 2677808 ACGTGCAAGTCAAAA GCCCCGTACCAA AGCCA TTGGTGCGGGGG TTTTTCCATTCTTCC TERM 2772 2677835 - 2677807 - T 79 -8.8 -4.27584 | opp_overlap 2677807 2677808, overlap 2677808 ACGTGCAAGTCAAAA GCCCCGTACCAA AGCCA TTGGTGCGGGGG TTTTTCCATTCTTCC TERM 2773 2677808 - 2677834 + T 85 -14.5 -3.47773 | opp_overlap 2677807 2677808, overlap 2677807 CGTGCAAGTCAAAAG CCCCGTACCAA AGCCA TTGGTGCGGGG GTTTTTCCATTCTTC TERM 2774 2677834 - 2677808 - T 74 -12.3 -3.16068 | opp_overlap 2677808 2677807, overlap 2677807 CGTGCAAGTCAAAAG CCCCGTACCAA AGCCA TTGGTGCGGGG GTTTTTCCATTCTTC TERM 2775 2677908 - 2677894 - T 75 -12.8 -3.04144 | opp_overlap 2677902 2677903 CCGGGACGGGCAAGA GGGGGC AGC GCCCCC TGCCAGTGGGCCTTG TM1040_2537 2678143 - 2677985 - | cytochrome oxidase maturation protein, cbb3-type TM1040_2538 2680345 - 2678162 - | heavy metal translocating P-type ATPase TM1040_2539 2680900 - 2680424 - | FixH TM1040_2540 2682334 - 2680904 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 2776 2682062 - 2682050 - G 74 -6.9 -4.35044 | CGAGGTAAAGAGAAA CAGCC CTA GGCCG GCCATGATCAAAAGG TM1040_2541 2683366 - 2682482 - | LysR family transcriptional regulator TERM 2777 2682558 - 2682587 + g 76 -5.7 -4.63218 | gap 1, opp_overlap 2682554 2682557 GGACGCAGCAAGCAC GGGCGGTGCACTAT GTG ATAGC-CACGGCCC TTTTCTTCGCAGAAA TERM 2778 2682635 - 2682604 - G 87 -10 -4.36914 | TTTCTTCGCAGAAAA GCTCGGTCAGGCGG CCCG CCGCCACATCGAGC GCGACGAATTCACGC TERM 2779 2683336 - 2683326 - G 71 -8.2 -4.12942 | overlap 2683316 GCAAAGGCCGCAAAA GCCC TCA GGGC CGACAAGGGGGGCAT TERM 2780 2683681 - 2683644 - R 71 -4.2 -4.64024 | gap 1, overlap 2683645 2683646 AAACGAAAGAAGAAA CCTACCC-CACGCCACA CACCC TGTGGCGTGCAAGTAAT CGCCCAGCGCCTGCG TERM 2781 2684020 - 2683997 - R 100 -17.4 -4.54727 | opp_overlap 2683996 2683995 2683993 TCCCCCAAACGAAAA GGGCCGCCCC AGAT GGAGCGGCCC AGTCTTTTCAGTGTT TM1040_2542 2684927 - 2684043 - | cytochrome c oxidase, cbb3-type, subunit III TM1040_2543 2685121 - 2684924 - | Cbb3-type cytochrome oxidase component TM1040_2544 2685864 - 2685136 - | cytochrome c oxidase, cbb3-type, subunit II TM1040_2545 2687483 - 2685879 - | cytochrome c oxidase, cbb3-type, subunit I TERM 2782 2687144 - 2687123 - G 72 -2.2 -4.81249 | overlap 2687124 CGCCAAACGCAAAAA TCACTGCA GATGTG TGCAGCGG ACGCAGGCGGCCAAA TM1040_2546 2687707 - 2688546 + | hypothetical protein TERM 2783 2688569 - 2688599 + T 85 -4.7 -5.28778 | opp_overlap 2688574, overlap 2688574 GGCGGCAAAGGAAGG CAAAAGTCAGCTC TACTT GGGCTGACTTTCC TTTTTTGTCGGTCAT TERM 2784 2688574 - 2688594 + T 81 -9 -4.47686 | opp_overlap 2688574, overlap 2688569 CAAAGGAAGGCAAAA GTCAGCTC TACTT GGGCTGAC TTTCCTTTTTTGTCG TERM 2785 2688594 - 2688574 - T 71 -6.8 -4.33808 | opp_overlap 2688574 2688569 CAAAGGAAGGCAAAA GTCAGCTC TACTT GGGCTGAC TTTCCTTTTTTGTCG TM1040_2547 2689464 - 2688724 - | Crp/FNR family transcriptional regulator TERM 2786 2688973 - 2688994 + g 76 -8.7 -4.14243 | opp_overlap 2688955 2688985, overlap 2688959 ATCGCGACGCGCGAT GATCGACAG AAGG CTGGCGATC TTTTCGCGTGCGGTC TM1040_2548 2689525 - 2690880 + | coproporphyrinogen III oxidase TERM 2787 2690937 - 2690917 - T 75 -12.5 -3.02144 | opp_overlap 2690906 CCATTCGTGGCAAGA TGCGAGGGC TCT GCCCTCGCG CTCCCGGGATATTTT TM1040_2549 2692563 - 2690971 - | ABC transporter related TERM 2788 2692470 - 2692445 - G 80 -11.9 -3.72893 | gap 1, overlap 2692467 GACTCGCCCACCAAA GCCACCGTCTCG CCA CGAGACAG-GGC AAAGGACACCCCTTT TM1040_2550 2693725 - 2692619 - | binding-protein-dependent transport systems inner membrane component TM1040_2551 2694818 - 2693730 - | binding-protein-dependent transport systems inner membrane component TM1040_2552 2696676 - 2694826 - | extracellular solute-binding protein TERM 2789 2696995 - 2696965 - R 100 -24.2 -4.14392 | opp_overlap 2696970, overlap 2696970 GCGCAAGCGTCAAAA GAAAAGGCCGCAGC AGT GCTGCGGCCTTTTC ACGTTAACCCTGTGC TERM 2790 2696990 - 2696970 - R 100 -18.3 -5.08255 | opp_overlap 2696970, overlap 2696965 AGCGTCAAAAGAAAA GGCCGCAGC AGT GCTGCGGCC TTTTCACGTTAACCC TERM 2791 2696970 - 2696990 + r 100 -18.3 -4.19238 | opp_overlap 2696970 2696965 AGCGTCAAAAGAAAA GGCCGCAGC AGT GCTGCGGCC TTTTCACGTTAACCC TM1040_2553 2697520 - 2697020 - | cytochrome c, class I TM1040_2554 2697641 - 2698471 + | prephenate dehydratase TERM 2792 2698503 - 2698481 - T 79 -12 -3.55444 | opp_overlap 2698472 CGCTGAGGGCGCAAA CTGGCCCC GTTGATT GGGGCCAG CCACAGATACACGGA TM1040_2555 2700408 - 2698525 - | twin-arginine translocation pathway signal TERM 2793 2699386 - 2699407 + g 70 -5.1 -4.49756 | gap 1 AACGATCCGACCATC CGCCG-CATG CAC CATCTCGGCG TTTTCATGTTTGAAA TERM 2794 2699838 - 2699852 + g 77 -11.4 -3.65351 | CGACTTGATACCCTG TCGCGC CGC GCGCGA TTTCCATCACCGTGA recO 2701281 - 2700556 - | DNA repair protein RecO TM1040_2557 2701614 - 2701285 - | hypothetical protein TERM 2795 2701710 - 2701699 - R 71 -4.4 -4.63218 | overlap 2701704 GCGCGTGCAAGAAAA GCAA ACCT TTGC TCCAGAGGCACGGGC era 2702684 - 2701779 - | GTP-binding protein Era TM1040_2559 2703409 - 2702681 - | RNAse III TERM 2796 2703548 - 2703520 - R 86 -10.3 -4.25104 | TTGCGCGCAGCAAAA CGGCCGCAGAT GCAAAAG ACCTACGGCCG ACATGGATGATCCCG TM1040_2560 2704413 - 2703577 - | signal peptidase I acpS 2704986 - 2704558 - | 4'-phosphopantetheinyl transferase TM1040_2562 2705438 - 2705013 - | hypothetical protein TM1040_2563 2706193 - 2705435 - | pyridoxal phosphate biosynthetic protein PdxJ TERM 2797 2705812 - 2705800 - G 70 -4.7 -4.48449 | overlap 2705796 2705801 2705802 CGATGAAAATAGAAA CCCGG CTT CCGGC CTCTCGCAGCGGCGC TM1040_2564 2707018 - 2706314 - | hypothetical protein TM1040_2565 2709181 - 2707049 - | metal dependent phosphohydrolase TM1040_2566 2709573 - 2709220 - | DNA-directed RNA polymerase subunit omega TERM 2798 2709699 - 2709678 - R 88 -10.9 -4.43189 | gap 1 ACGAATGCTACAAAA CGC-CCCTCT CTC AGAGGGCGCG CACCTCGGCCACATC TM1040_2567 2710257 - 2709688 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TM1040_2568 2710393 - 2710962 + | hypothetical protein TERM 2799 2711004 - 2711030 + F 100 -15.8 -5.07652 | opp_overlap 2711004 CTGATCATCGAGAAA CCCCCGGTGCAG ATA CTGCGGCGGGGG TTTTCTTTTGCAGCC TERM 2800 2711030 - 2711004 - f 93 -13.6 -3.93695 | opp_overlap 2711004 CTGATCATCGAGAAA CCCCCGGTGCAG ATA CTGCGGCGGGGG TTTTCTTTTGCAGCC TM1040_2569 2711132 - 2712082 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TM1040_2570 2712248 - 2712865 + | lysine exporter protein LysE/YggA TM1040_2571 2712865 - 2713323 + | hypothetical protein TM1040_2572 2713320 - 2713919 + | methyltransferase type 11 TM1040_2573 2713912 - 2714385 + | ribonuclease H TM1040_2574 2714499 - 2715122 + | hypothetical protein TM1040_2575 2715412 - 2715176 - | hypothetical protein TM1040_2576 2715730 - 2715494 - | hypothetical protein TM1040_2577 2716653 - 2715727 - | methionyl-tRNA formyltransferase TERM 2801 2716510 - 2716527 + g 77 -4.1 -5.00616 | CTCGGCCCTGGCGTG GACCG GGGTTGGA CGGTC TTTTTTGCCGCGACC TM1040_2578 2717307 - 2716810 - | formylmethionine deformylase TM1040_2579 2717813 - 2717304 - | peptide deformylase TM1040_2580 2718334 - 2717810 - | peptide deformylase TM1040_2581 2718493 - 2719665 + | aminotransferase, class I and II TERM 2802 2719709 - 2719681 - T 86 -11.6 -4.15698 | opp_overlap 2719680 2719681 2719706, overlap 2719682 CACGCACATAAAGAA GGCGCGCGACGG GAAAA CTGTCGCGCGCA ACTTTGGGAGGGTCG TERM 2803 2719708 - 2719682 - T 83 -15.1 -3.08696 | opp_overlap 2719680 2719681 2719706, overlap 2719681 ACGCACATAAAGAAG GCGCGCGACGG GAAAA CTGTCGCGCGC AACTTTGGGAGGGTC TM1040_2582 2720146 - 2719778 - | hypothetical protein TM1040_2583 2720387 - 2721361 + | putative glutathione S-transferase TM1040_2584 2721455 - 2722450 + | aminotransferase TM1040_2585 2722447 - 2723358 + | adenosylcobinamide-phosphate synthase TERM 2804 2724266 - 2724288 + G 93 -14.8 -3.89346 | CCTCCTTGCTGCTGC CGCAGGGCCA CAA TGGCCCCGCG TTTCTCGCCTACCCC TM1040_2586 2723401 - 2724597 + | lytic murein transglycosylase TERM 2805 2724628 - 2724668 + T 85 -16.2 -3.09234 | gap 1, overlap 2724620 GATTGGACGGTAGCG TGGTGGCGCTGAGACGGTC TTAG GCCCGCCTCAG-GCCACCA TTGCCTCGGCTTTCT TM1040_2587 2728113 - 2724658 - | chromosome segregation protein SMC TERM 2806 2725273 - 2725293 + g 86 -12.5 -3.85698 | GCGCAGGTTCACCGC CCCCAGCGC ATC GCGCTGGCG TTTGTGGCGGGCGAC TM1040_2588 2729457 - 2728243 - | aminotransferase, class I and II TM1040_2589 2729612 - 2730379 + | GntR family transcriptional regulator TM1040_2590 2731197 - 2730376 - | ABC transporter related TERM 2807 2731127 - 2731112 - G 71 -5.4 -4.4261 | GCCTCAAGACCAAAA TCCTGC AGGC GCAAGA CCGTAGGGCCCGGCG TERM 2808 2731389 - 2731410 + r 81 -12.9 -3.54543 | opp_overlap 2731389 CCTCAGCACGCAAAA GCCCCAGCC ATAA GGCCGGGGC TTTCGCAAACTCGGT TERM 2809 2731410 - 2731389 - R 100 -15.1 -4.21194 | opp_overlap 2731389 CCTCAGCACGCAAAA GCCCCAGCC ATAA GGCCGGGGC TTTCGCAAACTCGGT TM1040_2591 2731994 - 2731437 - | F0F1 ATP synthase subunit B TM1040_2592 2732542 - 2731997 - | F0F1 ATP synthase subunit B' TM1040_2593 2732853 - 2732629 - | F0F1 ATP synthase subunit C TM1040_2594 2733713 - 2732910 - | F0F1 ATP synthase subunit A TM1040_2595 2734094 - 2733753 - | ATP synthase F0, subunit I TERM 2810 2734058 - 2734074 + g 82 -9.3 -4.32034 | overlap 2734067 CCAGTTTCTCCTCCA GCTGCGC CAT GCGCTGC TTTTGGTCGTCGTCG TM1040_2596 2735191 - 2734304 - | hypothetical protein TERM 2811 2734585 - 2734551 - G 91 -13.6 -3.82031 | gap 1 CCAATCACCAGCAAA GCGCCCCAGGC-CTG CGCCGT CAGAGCCTGTGGCGC GCCCTCCACCCAGAA TM1040_2597 2735291 - 2735620 + | ArsR family transcriptional regulator TM1040_2598 2736574 - 2735663 - | hypothetical protein TERM 2812 2736446 - 2736426 - G 74 -6 -4.46212 | opp_overlap 2736440 CCCGCCAGTACAAAA CGCACCGC ATTGA GCGCCGCG GGTGTTACCTCATTG TM1040_2599 2737461 - 2736583 - | LysR family transcriptional regulator TERM 2813 2736651 - 2736629 - G 70 -4.7 -4.44461 | overlap 2736631 AAGAAGCGCACAAAA CTCTGCACC TTGTT GGTGCGGTG GAGATCCACATGGGT TERM 2814 2737832 - 2737803 - g 70 -3.5 -4.60041 | opp_overlap 2737809 2737814, overlap 2737805 2737827 ACGGAGTCCCAAAAA GACGTATTGGCCC TGTC GGACCAATTGATC CAAGAGATCAAACAG TM1040_2600 2737602 - 2738183 + | (Acyl-carrier protein) phosphodiesterase TM1040_2601 2738899 - 2738369 - | Ala-tRNA(Pro) hydrolase TERM 2815 2738525 - 2738508 - G 89 -10.5 -4.57482 | GCATCCATAAAGAAA CGCACCC CCTT GGGCGCG CCGTTGATCATCGCC TM1040_2602 2739772 - 2738987 - | hypothetical protein TERM 2816 2739935 - 2739982 + H 79 -12.6 -3.51232 | gap 1, overlap 2739938 2739967 GTCCTTGGCGTTTGC CAGGGATCGCCCTCCACCAGCGC GTT GCGCCCGTGG-GGGCAAACCTTG TTGGTTTGCACCCAC TERM 2817 2739938 - 2739979 + H 79 -10.7 -3.89354 | gap 1, overlap 2739935 2739967 CTTGGCGTTTGCCAG GGATCGCCCTCCACCAGCGC GTT GCGCCCGTGG-GGGCAAACC TTGTTGGTTTGCACC TERM 2818 2740540 - 2740515 - g 91 -7.7 -4.8622 | gap 1, overlap 2740518 CGCCTCAAGGAAAAA GAGGGCAAGAAA GTG CTTCTTGCC-TC GCTCGACGTCTATCG TERM 2819 2740888 - 2740946 + G 73 -9.4 -3.89614 | gap 2 TGACCCGGATGGACG GC-GACGGGCGCGGCGGT-GCGGCGCTC TCGAT GCGCGCCGTGACCGGCAAGCCCATCCGC TTTGTCGGCCTTGGC TM1040_2603 2740131 - 2741675 + | signal recognition particle subunit FFH/SRP54 (srp54) TM1040_2604 2741685 - 2742215 + | GCN5-related N-acetyltransferase TM1040_2605 2742212 - 2742817 + | hypothetical protein TM1040_2606 2742810 - 2743118 + | chorismate mutase TERM 2820 2743530 - 2743499 - g 75 -7.8 -4.1891 | overlap 2743518 CGCGCTGAAGAGAAA GCCGCCAAGGCAGC AGAA GCCGCCGAAGCAGC AGACGCGGAATAATC rpsP 2743178 - 2743543 + | 30S ribosomal protein S16 TERM 2821 2743625 - 2743643 + G 86 -13.8 -3.53811 | opp_overlap 2743624 2743623 TCTGTTGATGAAATT GCGCCGGG ACG TCCGGCGC TTTCGCACCGATCCG TERM 2822 2743657 - 2743695 + G 73 -10.3 -3.65199 | gap 1, overlap 2743658 2743667 GCTTTCGCACCGATC CGGTGGACGAGGCAGTGC TGAC GCGCTGCCTC-TCTGCCA TTTCGCTGGCGCCTT TERM 2823 2743658 - 2743694 + G 73 -13.8 -2.78798 | gap 1, overlap 2743657 2743667 CTTTCGCACCGATCC GGTGGACGAGGCAGTGC TGAC GCGCTGCCTC-TCTGCC ATTTCGCTGGCGCCT TM1040_2608 2743548 - 2744201 + | Cob(II)yrinic acid a,c-diamide reductase TERM 2824 2744269 - 2744291 + F 75 -9 -4.06419 | overlap 2744256 CATGGTGATCTTCAC CCTTGTCGCC TTT GGCGCCGGGG TTCTTTATGAACGCA TERM 2825 2744585 - 2744571 - g 85 -12.8 -3.72695 | ACCCGCGCGATCAAA GGCGGC TTT GCCGCC CGCATCGTGGATGTC TM1040_2609 2744391 - 2744906 + | 16S rRNA processing protein RimM TM1040_2610 2745917 - 2744907 - | hypothetical protein TERM 2826 2744965 - 2744987 + g 71 -9 -3.77302 | ATCCGCTCAATTCGG CGCTGCTGCG ACG CGCTGCGGTG TTCCTTTTCTACTGG TERM 2827 2745219 - 2745196 - G 74 -6.6 -4.34402 | overlap 2745200 CGCGCCACATCAAAA GCCACGGGAC CGGT ATCGCGCGGC GCCGGATCCAAAGCA TERM 2828 2745818 - 2745771 - G 70 -3.2 -4.72272 | gap 1, opp_overlap 2745775 CCCCTCCAGCAAAAA GACCTCGCGCG-CGGCTGTGGAT TTG ATCAGGCGCCATCGCGCGCGATC TGTCGCAATCCCCAG TERM 2829 2746753 - 2746730 - g 82 -12.4 -3.70511 | overlap 2746719 2746717 AAGATCACCCAAGAA CGCCGCCC GGATCTGT GGGCGGCG TATCAGGCGCGCAAG TM1040_2611 2745980 - 2746780 + | tRNA (Guanine37-N(1)-) methyltransferase TM1040_2612 2747173 - 2746781 - | hypothetical protein TM1040_2613 2747330 - 2747662 + | hypothetical protein TERM 2830 2747714 - 2747743 + T 72 -9.9 -3.62354 | opp_overlap 2747703, overlap 2747713 2747715 AGCAGCTCCGGATCG CCTGAGCCCTGCG CGAA CGCGGGGCTCAAC TCTTTCCTTTGGGGG TERM 2831 2747715 - 2747742 + T 76 -13.4 -2.7693 | opp_overlap 2747703, overlap 2747714 2747713 GCAGCTCCGGATCGC CTGAGCCCTGCG CGAA CGCGGGGCTCAA CTCTTTCCTTTGGGG TM1040_2614 2748164 - 2747739 - | MerR family transcriptional regulator TM1040_2615 2748232 - 2749446 + | major facilitator transporter TERM 2832 2749502 - 2749538 + F 70 -5.1 -4.51765 | gap 2, opp_overlap 2749500, overlap 2749521 TCTGGCCTAAACACC GCGCGTCCGG--GGCTC TGATC GAGTCGTCCGGGCTCGC TTTGTTTGGCTTATG rplS 2749710 - 2750081 + | 50S ribosomal protein L19 rpmE 2750093 - 2750314 + | 50S ribosomal protein L31 TERM 2833 2750379 - 2750358 - f 80 -14.4 -2.90723 | opp_overlap 2750358 GGATTGCCAATCAGA CGCCGCCC TCCCCG GGGCGGCG TTTTTGCGTTTCAGC TERM 2834 2750358 - 2750379 + F 100 -15.1 -4.81249 | opp_overlap 2750358 GGATTGCCAATCAGA CGCCGCCCT CCCC GGGGCGGCG TTTTTGCGTTTCAGC TM1040_2618 2750599 - 2751408 + | putative chromosome partitioning protein TM1040_2619 2752744 - 2751599 - | adenylate/guanylate cyclase TM1040_2620 2753300 - 2752842 - | MarR family transcriptional regulator TM1040_2621 2753377 - 2754732 + | homogentisate 1,2-dioxygenase TM1040_2622 2754850 - 2756106 + | fumarylacetoacetate hydrolase TM1040_2623 2756189 - 2757139 + | beta-lactamase-like TERM 2835 2757168 - 2757145 - f 78 -14 -2.62616 | GCAGTCCTGATATCA GTCTCTAACC CATG GGTTAGAGAC ACATCACAGCCATTG TM1040_2624 2757262 - 2758869 + | hypothetical protein TM1040_2625 2758875 - 2759081 + | hypothetical protein TM1040_2626 2759074 - 2759721 + | maleylacetoacetate isomerase TERM 2836 2759780 - 2759797 + F 95 -12.7 -4.60713 | opp_overlap 2759779 2759782 GGGCCGGAACCACAG GAGCGCC ACCC GGCGCTC TTTTGTGGTGTTTTG TM1040_2627 2759858 - 2761072 + | protein of unknown function UPF0052 and CofD TM1040_2628 2763355 - 2761148 - | penicillin-binding protein 1A TERM 2837 2761366 - 2761341 - G 74 -11.1 -3.53091 | gap 1, opp_overlap 2761340 2761337 ATCTCTGCGGGCAAA CCGC-CGCCGGT GAC ACCGGTGAGCGG CGTGTTGTCATCATA TERM 2838 2763236 - 2763250 + g 83 -4.9 -5.03747 | GGCCTTTTGTGGGGC GCGCT TCCTT GGCGC TTTTTTGGCCGGTTT TM1040_2629 2763645 - 2763983 + | nitrogen regulatory protein P-II TM1040_2630 2764013 - 2765335 + | ammonium transporter TERM 2839 2765355 - 2765390 + T 84 -13.4 -3.68738 | opp_overlap 2765358 2765363, overlap 2765363 TCGCTCCATAGAACA AAAGAAAACGCGGCTC CTCG GGGCCGCGTTTTTTTA TTCATTTATTCAGAA TERM 2840 2765387 - 2765358 - T 100 -11.5 -4.84311 | gap 1, opp_overlap 2765355 2765363, overlap 2765363 CTCCATAGAACAAAA GAAAACGCGGCTCC TCG GG-GCCGCGTTTTT TTATTCATTTATTCA TERM 2841 2765382 - 2765363 - T 100 -11.4 -5.31091 | gap 1, opp_overlap 2765355 2765363, overlap 2765358 TAGAACAAAAGAAAA CGCGGCTCC TCG GG-GCCGCG TTTTTTTATTCATTT TERM 2842 2765363 - 2765382 + T 100 -12.8 -5.9003 | opp_overlap 2765363 2765358, overlap 2765355 TAGAACAAAAGAAAA CGCGGCTC CTCG GGGCCGCG TTTTTTTATTCATTT TM1040_2631 2766052 - 2765408 - | ribonuclease T2 TERM 2843 2766911 - 2766900 - g 71 -5.8 -4.29119 | opp_overlap 2766908, overlap 2766859 2766907 2766908 GACGACAAGAAAGAA GACG AAAT CGTC GACGCCGACAGCTTC TM1040_2632 2766222 - 2766989 + | hypothetical protein TERM 2844 2767062 - 2767035 - f 100 -13.5 -4.83615 | gap 1, opp_overlap 2767035 GACGTCTGACAAAAA CACCGCAGTCGC CCCGT GCG-CTGCGGTG TTTTTTTTGCCTCTT TERM 2845 2767035 - 2767062 + F 100 -13.5 -5.85178 | gap 1, opp_overlap 2767035 GACGTCTGACAAAAA CACCGCAGTCGC CCCGT GCG-CTGCGGTG TTTTTTTTGCCTCTT TERM 2846 2767335 - 2767350 + G 71 -8.2 -4.05446 | CGCGCCGGGCAGTCA GGCGTG GCAC CGCGCC TTTGTCATTGCGGCA TM1040_2633 2767201 - 2767701 + | hypothetical protein TM1040_2634 2767830 - 2768681 + | 3-mercaptopyruvate sulfurtransferase TERM 2847 2769032 - 2769042 + G 75 -2.4 -4.96848 | CAAGATGGCCAACCC CGAG GCA CGCG TTTTTGTGTCCGACC TERM 2848 2769770 - 2769757 - g 74 -6.7 -4.37658 | AACTCGTCGAGAAAA TGCGT GTAG ACGCA GGGATTTACATGGTC TM1040_2635 2768685 - 2769869 + | aromatic amino acid aminotransferase TERM 2849 2769913 - 2769894 - T 90 -5.6 -5.45726 | gap 1, opp_overlap 2769894, overlap 2769895 2769896 GAGATTTTAAAAAAA CGCGCTCCC TCG GGG-GTGCG TTTTTTAGTTTTTGG TERM 2850 2769894 - 2769913 + T 100 -9.2 -5.54079 | opp_overlap 2769894 2769895 2769896 GAGATTTTAAAAAAA CGCGCTCC CTCG GGGGTGCG TTTTTTAGTTTTTGG TM1040_2636 2770585 - 2769971 - | enoyl-CoA hydratase/isomerase TM1040_2637 2771331 - 2770582 - | short-chain dehydrogenase/reductase SDR TM1040_2638 2771466 - 2772980 + | hypothetical protein TERM 2851 2773009 - 2773036 + F 100 -16.3 -4.82901 | opp_overlap 2773003 2773006 2773011, overlap 2773003 ACGCCCAAAGGATCA GAGGCCGCTCC TTTGCC GGGGCGGCCTC TTTTTATGGCGCAGA TM1040_2639 2773042 - 2774463 + | microcin-processing peptidase 1 TM1040_2640 2774450 - 2775250 + | inositol monophosphatase TERM 2852 2775310 - 2775298 - g 70 -10.5 -3.53012 | overlap 2775282 2775283 CCCCTGCGGCTGAAA CGCCC CGA GGGCG AGCTGGTCTGGGCCC TM1040_2641 2775250 - 2776446 + | 3-deoxy-D-manno-octulosonic-acid transferase, putative TM1040_2642 2776433 - 2777434 + | lipid-A-disaccharide synthase TERM 2853 2777452 - 2777411 - T 72 -10.8 -3.53012 | gap 1, opp_overlap 2777449 2777451, overlap 2777413 2777415 2777416 CTGGCCCGCCTCAAA GACAT-CGCGCCGCCCCCC GACTA GGAGAGCGGCGCGCACAAC CGTCAGCGACGGATC TERM 2854 2777450 - 2777413 - T 77 -12 -3.34398 | gap 1, opp_overlap 2777449, overlap 2777411 2777415 2777416 GGCCCGCCTCAAAGA CAT-CGCGCCGCCCCCC GACTA GGAGAGCGGCGCGCACA ACCGTCAGCGACGGA TERM 2855 2777447 - 2777415 - T 87 -16.2 -3.24232 | overlap 2777413 2777411 2777416 CCCGCCTCAAAGACA TCGCGCCGCCCCCC GACTA GGAGAGCGGCGCGC ACAACCGTCAGCGAC TERM 2856 2777446 - 2777416 - T 95 -19.7 -2.54325 | overlap 2777415 2777413 2777411 CCGCCTCAAAGACAT CGCGCCGCCCCCC GACTA GGAGAGCGGCGCG CACAACCGTCAGCGA TM1040_2643 2778172 - 2777471 - | DsbA family thiol:disulfide interchange protein TM1040_2644 2778696 - 2778169 - | hypothetical protein TERM 2857 2779530 - 2779482 - g 73 -5.2 -4.64334 | opp_overlap 2779495 2779503 AACTGCCCAAGAAAA CGCCCAAGAAACCCAAACCCAC CCGCT ATGGGTTTGTCTATCTGGCGCG CAGTGCCGAAGGCGA TERM 2858 2779563 - 2779577 + G 71 -8.5 -4.08216 | GGCTCCTCGAGCGCC GCCCC GACAA GGGGC TTTTGGGGGGGATGC TM1040_2645 2778782 - 2779843 + | A/G-specific DNA-adenine glycosylase TM1040_2646 2779924 - 2781066 + | alkane 1-monooxygenase TM1040_2647 2782768 - 2781272 - | methyl-accepting chemotaxis sensory transducer TM1040_2648 2784190 - 2782796 - | adenylate/guanylate cyclase TERM 2859 2783371 - 2783359 - G 100 -9.1 -5.12172 | opp_overlap 2783369, overlap 2783361 TATCAACAAATAAAA TCGCG ATG CGCGA GGTGCGCACCTGGCT TERM 2860 2783954 - 2783939 - G 72 -2.5 -4.7254 | ACGGCGGATGAAAAA CCCGT TGACGC ACAGG AGCGCGAGGAGCGCC TERM 2861 2784297 - 2784279 - R 100 -13.8 -5.1287 | GTCACATGCAAAAAA CCCCGCCA GAC CGGCGGGG CAAGGTGCAGCGCGC TM1040_2649 2785543 - 2784374 - | DNA methylase N-4/N-6 TERM 2862 2785317 - 2785333 + g 73 -10.1 -3.60475 | ACCTTGGAGTTGTCA GGGCGGT GCA ACTGCCC TTTGAGCTGGAGATT TERM 2863 2785447 - 2785470 + g 72 -2.3 -4.85545 | opp_overlap 2785444 2785441 2785440 TGTTTAAAGGGAGCG CCGTAGCGG CGCCCT TCGCGATGG TTTTGTTCATTTGCT TM1040_2650 2786278 - 2785589 - | RNase HII TERM 2864 2785640 - 2785653 + g 78 -4.5 -4.83169 | overlap 2785641 CGACCTTCTATGATG TGGGG TCAC CCCTA TTTTTATGAGCGCAT TERM 2865 2785641 - 2785651 + g 71 -8.2 -4.03995 | overlap 2785640 GACCTTCTATGATGT GGGG TCA CCCC TATTTTTATGAGCGC TERM 2866 2786292 - 2786270 - G 100 -14.9 -5.61596 | opp_overlap 2786268 AGCGGCACAAAAAAA GGGGCGCAT GCCAG ATGCGCCCC AGTCTGCTGCTCGAA TM1040_2651 2786789 - 2786322 - | hypothetical protein TERM 2867 2787009 - 2787042 + GH 76 -13.2 -3.03159 | gap 1 TCTTTTGCTGCTCCT TCTGGC-GCTTGCGC AGCCC GCGCAGGCCGCCGGA TGTTACGCCGATTAC TM1040_2652 2786968 - 2787261 + | hypothetical protein TM1040_2653 2787233 - 2787934 + | putative transcriptional regulator, CadC TERM 2868 2787993 - 2787976 - f 83 -9.8 -4.2349 | opp_overlap 2787978 CCCGGATACGCAAAA GGCGGG GGCGCT CCCGCC CGTCGTCTGTGAATT TERM 2869 2788024 - 2788077 + F 100 -15.1 -4.07568 | gap 1, overlap 2788026 GAAAATTCCCATCCG CCCGTTG-GGCCCGGCAGGCCGCGCC GAA GGCGCGGCCTGCCCCCCGGCGACGTG TTTTGCACGGCGCAA TERM 2870 2788026 - 2788075 + F 95 -16.3 -3.63744 | gap 1, overlap 2788024 AAATTCCCATCCGCC CGTTG-GGCCCGGCAGGCCGCGCC GAA GGCGCGGCCTGCCCCCCGGCGACG TGTTTTGCACGGCGC TERM 2871 2788144 - 2788164 + F 70 -9.7 -3.48276 | opp_overlap 2788145, overlap 2788145 GGAAATCCCTCCCAA ACCTTCCCA TAT TGGGAAGGC TTCTATCGGAGAGCA TERM 2872 2788145 - 2788163 + F 73 -13.2 -2.68823 | opp_overlap 2788145, overlap 2788144 GAAATCCCTCCCAAA CCTTCCCA TAT TGGGAAGG CTTCTATCGGAGAGC TERM 2873 2788163 - 2788145 - f 81 -13.2 -3.54935 | opp_overlap 2788145 2788144 GAAATCCCTCCCAAA CCTTCCCA TAT TGGGAAGG CTTCTATCGGAGAGC TERM 2874 2788965 - 2788940 - g 78 -10.5 -3.86015 | gap 1 GATCTGCGCGAGAAA GGCATGACCGAC TAT GTCG-CCATGCC GCTGCCCTTCTCGGA TM1040_2654 2788187 - 2789740 + | adenylate/guanylate cyclase TERM 2875 2789813 - 2789783 - T 82 -15.4 -3.00298 | overlap 2789802 GCGCTGAACGACATA CGCCCGCCCCGA GGTAAAA CCGGGACGGGCG CGGGACTGGCGCGCG TM1040_2655 2791367 - 2789859 - | aldehyde dehydrogenase TERM 2876 2790813 - 2790826 + g 71 -5.9 -4.37658 | overlap 2790815 CTTGGTGCAGGCCAG CGCCG TCAG CGGTG TTTTCTCCGACGGTT TM1040_2656 2792497 - 2791376 - | saccharopine dehydrogenase TM1040_2657 2793053 - 2792625 - | AsnC family transcriptional regulator TM1040_2658 2793812 - 2793057 - | hypothetical protein TERM 2877 2793249 - 2793281 + g 70 -10.6 -3.53444 | opp_overlap 2793249 GCGCTCCTCTTCAAA GCGC-GGGCTGATCAG CGT CAGATC-GCCCAGCGC TTTGGGCGGGACTGC TERM 2878 2793281 - 2793249 - G 70 -10.6 -3.53012 | opp_overlap 2793249 GCGCTCCTCTTCAAA GCGC-GGGCTGATCAG CGT CAGATC-GCCCAGCGC TTTGGGCGGGACTGC TERM 2879 2793408 - 2793424 + g 79 -9.3 -4.20106 | overlap 2793409 CCCATAGAGCGTCCC GGCCGGG TGC CCCGGCG TTTTGCGTCCCATTT TERM 2880 2793409 - 2793423 + g 72 -12.8 -3.11341 | overlap 2793408 CCATAGAGCGTCCCG GCCGGG TGC CCCGGC GTTTTGCGTCCCATT TM1040_2659 2795953 - 2793914 - | ATP-dependent DNA helicase RecQ TERM 2881 2793970 - 2793944 - G 73 -8.7 -3.88291 | gap 1, overlap 2793956 CAGGACCTCCAGAAA CGCCGAG-GCAA ACCG TTGCGCGCGGCG CTCCCCCAACAGCCG TERM 2882 2794653 - 2794612 - G 72 -2.2 -4.8622 | gap 2, overlap 2794614 GCCCGCAAGCAAAAA CCGACAGATCGTCATGCCCC TTCT GGCGCACG-CGGTC-GTTGG CGTTGCCGATCAGAA TERM 2883 2794994 - 2795010 + g 71 -9.3 -3.80573 | overlap 2794995 GGCGGGCGCCCCATC GCGGCCG GCG CGGCCGA TTTCCTGATAATAGG TERM 2884 2794995 - 2795009 + g 70 -12.8 -2.88023 | overlap 2794994 GCGGGCGCCCCATCG CGGCCG GCG CGGCCG ATTTCCTGATAATAG TERM 2885 2795381 - 2795360 - G 70 -10.8 -3.53091 | overlap 2795372 ATTGGGCCGGTCAAA GCCGCGCA AGAAGG CGCGCGGC GCCTCACCGTCGAAC TERM 2886 2795384 - 2795372 - G 73 -10.5 -3.6279 | overlap 2795360 AAAGCCGCGCAAGAA GGCGC GCG GCGCC TCACCGTCGAACAGT TM1040_2660 2796411 - 2796082 - | hypothetical protein TM1040_2661 2796504 - 2797082 + | hypothetical protein TM1040_2662 2797133 - 2798515 + | major facilitator transporter mepA 2798512 - 2799435 + | penicillin-insensitive murein endopeptidase TM1040_2664 2799408 - 2800334 + | hypothetical protein TM1040_2665 2800489 - 2801121 + | hypothetical protein TERM 2887 2801386 - 2801410 + F 100 -17.1 -4.2535 | CATAGACTTTCGGAA GGGCCGCGCCT TAT GGGCGTGGCCC TTTTCCGTATCCTGT TERM 2888 2802139 - 2802111 - g 100 -12.3 -4.68103 | TCAAGGCCAAGAAAA CCCGCGCCGAGGT GAA ATCCCTGCGCGGG CGGGTGGACGGCGAC TM1040_2666 2801738 - 2802157 + | hypothetical protein TERM 2889 2802265 - 2802241 - f 75 -12.7 -3.04144 | GCGGCAGCGCTAAGA CTGTGCGCCCG GAA CGGGCGCTCCG CTTGAGACCCAGAAC TM1040_2667 2802298 - 2803320 + | peptidase S58, DmpA TERM 2890 2803949 - 2803959 + G 80 -3.2 -5.12068 | GGACGGCTATCCGCT CTAC CAG GTGG TTTTTATTCGCTCTG TERM 2891 2804328 - 2804382 + G 78 -13.3 -3.14587 | overlap 2804319 2804326 2804372 2804377 GGCTCTTGCGGCTAT GCGACGCTGCATATCCTGACCCGCC GGGCG GGCGGGTCGGACAAGGCCGCGACGC TGTCGTTTTATCCCA TERM 2892 2804377 - 2804387 + G 74 -6.8 -4.37658 | overlap 2804328 2804326 2804372 GGTCGGACAAGGCCG CGAC GCT GTCG TTTTATCCCACGCTT TERM 2893 2804511 - 2804493 - g 79 -12.4 -3.53224 | GATGTGGTGCTCAAA CCCTGGGC CTG GCCCAAGG GGATCGAATGGGTGA TM1040_2668 2803833 - 2804795 + | hypothetical protein TM1040_2669 2804811 - 2805431 + | HAD family hydrolase TM1040_2670 2805428 - 2806345 + | ornithine cyclodeaminase TERM 2894 2806747 - 2806767 + G 70 -10.4 -3.53091 | gap 1, overlap 2806756 GTGGGCCATTCTGCG GGCGG-GGC CATT GCCACCGCC TTTGCGGCGGCAAAT TM1040_2671 2806342 - 2807274 + | alpha/beta hydrolase fold TM1040_2672 2808515 - 2807277 - | major facilitator transporter TM1040_2673 2808684 - 2809748 + | AFG1-like ATPase TERM 2895 2810609 - 2810581 - g 71 -8 -4.07568 | gap 1, opp_overlap 2810581 2810580, overlap 2810566 2810565 GCGCCGCCCCCAAAA GCCCTCGCTGCTG GGCT CTGC-GCGGGGGC CTTGGTGCTGATATC TM1040_2674 2809876 - 2810637 + | DeoR family transcriptional regulator TM1040_2675 2811905 - 2810634 - | FolC bifunctional protein TERM 2896 2811092 - 2811076 - G 78 -13.7 -3.21276 | overlap 2811074 TGTGCCCCCACAACA GCCGCCT CGC AGGCGGC CTCATCCGCGCCAAG TERM 2897 2812024 - 2811984 - R 95 -17.5 -3.53012 | opp_overlap 2811974 2812010 2812018, overlap 2811989 CCCGTCGGGGTGAAA GCGAAGCGCCCGCCCCG TTTGGGG CGGGACGGGCGCTGCCC GACCTTGGGTCAGGC TERM 2898 2812019 - 2811989 - R 95 -19 -3.27525 | opp_overlap 2811974 2812010 2812018, overlap 2811984 CGGGGTGAAAGCGAA GCGCCCGCCCCG TTTGGGG CGGGACGGGCGC TGCCCGACCTTGGGT TERM 2899 2812010 - 2812028 + r 71 -11.6 -3.05384 | opp_overlap 2811989 2811984, overlap 2812018 GCCCCGTTTGGGGCG GGACGGGC GCT GCCCGACC TTGGGTCAGGCAAGA TERM 2900 2812085 - 2812101 + r 81 -4.4 -5.02231 | gap 1 TTGTCTGCGCCCGAT GCGTCCT CCGC AGG-CGC TTTTTCGTCTTTTTG TM1040_2676 2813022 - 2812060 - | acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha TERM 2901 2812666 - 2812609 - G 79 -14.7 -2.87132 | opp_overlap 2812646 2812647, overlap 2812611 2812639 GGCGTTGCCGACATA CATGCCCATGGAGCCCGCCATGAAGGA GAAG TCCTGCGCGGCGGCCACGATGGGCGTG CGGCCGATTTCGCCG TERM 2902 2812682 - 2812701 + g 73 -4.9 -4.58663 | overlap 2812684 CGGCCGATTTCGCCG GTGGCGA CCAGCA TCGCCTC TTTTTCGCCGGTGGT TERM 2903 2813101 - 2813079 - R 71 -11.4 -3.06183 | GTGACTTTCAGTCAA TTGCAATCAG GCC CTGATCGCAA GCCGTGCCGCAAGCC TM1040_2677 2813969 - 2813085 - | abortive infection protein TM1040_2678 2817148 - 2814095 - | cyclic nucleotide-binding protein TERM 2904 2816257 - 2816304 + g 83 -16.8 -2.62184 | opp_overlap 2816294 GTTCTTTCCACGGCG CCGAGAGGTCCTTGTAGGCCGC AAGC GCGGCCACCAAGGCCCCCACGG TGATCTCACCGCGCA TM1040_2679 2817505 - 2818284 + | hypothetical protein TERM 2905 2818468 - 2818448 - f 75 -9.7 -3.73816 | AATATGAGAGGCAAA TCCCGGC AGAACAG GCCGGGA CACGCGCGCGAATGC TM1040_2680 2818500 - 2819261 + | hypothetical protein TM1040_2681 2819297 - 2819674 + | hypothetical protein TERM 2906 2819798 - 2819844 + T 70 -9.9 -3.47494 | gap 1 TTTTTGTGAGGGTTT GCGGGCCCGGACGG-GCCCGCC GAGG GGCGCGCGCCGGTCGGATCCCC TTGTGCTACTTCAAT TM1040_2682 2820934 - 2819870 - | DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada TERM 2907 2820244 - 2820256 + g 78 -6.9 -4.64657 | opp_overlap 2820236 2820237, overlap 2820243 GGCCAAAGCCGATGC CGCCG GGC TGGCG TTTTTGCAGCTTTGC TM1040_2683 2822205 - 2821249 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TM1040_2684 2824085 - 2822202 - | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like TERM 2908 2823802 - 2823787 - G 91 -8.2 -4.82901 | overlap 2823788 CGCCCGCCATAAAAA CCGGCG ATCA CGCCGA TGGCCGCCCCGATGG TM1040_2685 2825029 - 2824082 - | binding-protein-dependent transport systems inner membrane component TERM 2909 2824608 - 2824598 - G 74 -3.2 -4.72986 | CATGCCGAGGAAAAA CGAC GGA ATCG AAATGCCCAGAAGCA TERM 2910 2825115 - 2825080 - R 79 -12.4 -3.64703 | gap 1, opp_overlap 2825110 GGGGTTTCAGTCAAA CG-GGAGCGCGCGCCCC GCC GGGGCGCGCGCGGGTCG GATCGGGCAAAGCCC TERM 2911 2825110 - 2825141 + r 81 -15.2 -2.84619 | gap 1, opp_overlap 2825080 CGCCGGGGCGCGCGC GG-GTCGGATCGGGC AAA GCCCGATCCGAAACC TCTCATCAGTTCTTG TM1040_2686 2826733 - 2825147 - | extracellular solute-binding protein TERM 2912 2826057 - 2826071 + g 72 -2.8 -4.82901 | AGCTCTGCCGCGCCA TCCC AGTAGTC GGGA TTTTTCTCGACCACC TERM 2913 2826743 - 2826754 + H 78 -4.4 -4.92756 | TTTCATATCGCATCC TCTC TGTT GAGA TTTATTTTTCATGAT TERM 2914 2827423 - 2827443 + G 76 -13.9 -3.09968 | CTGCGCGCCCTCTGT CTGCGCGCG CAT CGCGCGCCG TATTACGATTGGCTG TM1040_2687 2826841 - 2827515 + | hypothetical protein TM1040_2688 2828361 - 2827522 - | GntR family transcriptional regulator TM1040_2689 2828383 - 2829603 + | allantoate amidohydrolase TM1040_2690 2831923 - 2829620 - | hemolysin-type calcium-binding region TERM 2915 2829751 - 2829707 - G 79 -9.1 -4.15044 | overlap 2829692 GGCCCGGGCAACAAA GTGCCGCCCCGTGCCGCCG CAGAGGC CGCCGGCAAGGAACAGCTC GGGAAAGAGATCAAA TERM 2916 2829881 - 2829853 - G 89 -10.3 -4.57073 | CACCTTCGGCAAAAA TCACCTGATGCGC CTC GGTCATCAGGTGA ATGTAGCTGACCCCG TERM 2917 2832065 - 2832041 - R 100 -13.5 -6.09196 | overlap 2832042 CTGAAAACAAAAAAA CCGCCCGCGAG AGA CCCGCGAGCGA TTGAAAAAATTCCGG TERM 2918 2832064 - 2832042 - R 100 -14.8 -4.23077 | overlap 2832041 TGAAAACAAAAAAAC CGCCCGCGAG AGA CCCGCGAGCG ATTGAAAAAATTCCG TM1040_2691 2833464 - 2832091 - | hypothetical protein TERM 2919 2832934 - 2832951 + g 71 -5.6 -4.30719 | GGTGTGGATCACCTG TTCGAC GGGCAG GTCGAA TTTCTTGTGAAAGAG TM1040_2692 2835003 - 2833528 - | succinate semialdehyde dehydrogenase TERM 2920 2833906 - 2833929 + g 76 -5.9 -4.62783 | opp_overlap 2833884 2833882, overlap 2833908 CAGCGCGTGGCGTTT GCCGCCGCA GGCCAA TGTGGCGCC TTTTTCCAATGCGTC TM1040_2693 2835566 - 2835087 - | AsnC family transcriptional regulator TM1040_2694 2836560 - 2835568 - | succinylglutamate desuccinylase/aspartoacylase TERM 2921 2836128 - 2836109 - G 76 -7.1 -4.44974 | GCAAAGGGGACAAAA TCCAGCG TCTTGC CGCCGGA GTGGAAATCCACCGC TM1040_2695 2837706 - 2836696 - | AraC family transcriptional regulator TM1040_2696 2837919 - 2838587 + | CHAP TERM 2922 2838609 - 2838641 + T 86 -10.6 -4.34008 | opp_overlap 2838614, overlap 2838614 TCATTTGTGACAGGT AAAAAGGCCCGCCA GACTA TGACGGGCCTTTTG TTGTTTTGATTGCTC TERM 2923 2838636 - 2838614 - T 100 -12.7 -4.70659 | opp_overlap 2838614 2838609 TGTGACAGGTAAAAA GGCCCGCCA GACTA TGACGGGCC TTTTGTTGTTTTGAT TERM 2924 2838614 - 2838636 + T 100 -10.5 -5.10656 | opp_overlap 2838614, overlap 2838609 TGTGACAGGTAAAAA GGCCCGCCA GACTA TGACGGGCC TTTTGTTGTTTTGAT TERM 2925 2838668 - 2838683 + T 70 -10.4 -3.30124 | GCTCCGCTGCGGGTC GGGACC TTTT GGTCCC TTGTGCGGGCTGCAC TM1040_2697 2839605 - 2838703 - | PRC-barrel TM1040_2698 2840570 - 2839728 - | IclR family transcriptional regulator TERM 2926 2839878 - 2839914 + g 74 -6.5 -4.37527 | gap 1, opp_overlap 2839883 CTCTCGGTTCATGTC GAACACCGGCGCCGCG ATACAG CGCA-TGCCGGCGTTC TTTTCCTCGTTGTCG TERM 2927 2841257 - 2841273 + G 80 -10.9 -3.71873 | GTGGATGGTGTGAGT TCCATCG CCT CGATGGA TTTCCGTATGGATGA TM1040_2699 2840738 - 2841928 + | serine-glyoxylate aminotransferase TERM 2928 2842282 - 2842270 - g 80 -3.3 -5.0538 | CCGCAGGCCAAAAAA GACAC CGT GCGCC GCTATGGCGGGAAGA TM1040_2700 2841928 - 2842893 + | pyridoxal-5'-phosphate-dependent enzyme, beta subunit TM1040_2701 2842959 - 2844122 + | D-3-hydroxyaspartate aldolase TERM 2929 2844129 - 2844163 + F 100 -15.7 -5.61881 | gap 1, overlap 2844130 GCCTACTGACCCCCA ACTGGCGCAGGTGCGC CTCT GCGC-CCTGCGCCGGA TTTTTCTTTTTGCAG TERM 2930 2844130 - 2844162 + F 100 -19.2 -3.95502 | gap 1, overlap 2844129 CCTACTGACCCCCAA CTGGCGCAGGTGCGC CTCT GCGC-CCTGCGCCGG ATTTTTCTTTTTGCA TM1040_2702 2844218 - 2845183 + | ornithine cyclodeaminase TERM 2931 2845209 - 2845231 + T 100 -13.4 -5.24129 | opp_overlap 2845209 ACACATGGCTCTAAA CGCCCCGG CCCTGCC CCGGGGCG TTTTTTATCCGACCA TERM 2932 2845231 - 2845209 - T 84 -13.4 -3.5525 | opp_overlap 2845209 ACACATGGCTCTAAA CGCCCCGG CCCTGCC CCGGGGCG TTTTTTATCCGACCA TM1040_2703 2846147 - 2845236 - | LysR family transcriptional regulator TERM 2933 2845736 - 2845722 - G 84 -3.4 -5.28176 | CGTACCGACAAAAAA GGCCAG GTC CAGACC TTCTGCCAGAATATC TM1040_2704 2846327 - 2847790 + | molybdopterin dehydrogenase, FAD-binding TM1040_2705 2847805 - 2850138 + | xanthine oxidase / xanthine dehydrogenase, molybdenum binding subunit apoprotein TM1040_2706 2850143 - 2850994 + | hypothetical protein TM1040_2707 2851063 - 2852646 + | xanthine/uracil/vitamin C permease TERM 2934 2852663 - 2852695 + T 91 -15.5 -3.55563 | opp_overlap 2852664, overlap 2852664 CTGCACACCCACAGG ACCCGTGCGCTGACA AAC TGTCCGCGCGCGGGC TTTCGAAACTCAGAT TERM 2935 2852694 - 2852664 - T 85 -16.8 -2.65815 | opp_overlap 2852663 2852664 TGCACACCCACAGGA CCCGTGCGCTGACA AAC TGTCCGCGCGCGGG CTTTCGAAACTCAGA TERM 2936 2852664 - 2852694 + T 93 -19 -2.73124 | opp_overlap 2852664, overlap 2852663 TGCACACCCACAGGA CCCGTGCGCTGACA AAC TGTCCGCGCGCGGG CTTTCGAAACTCAGA TM1040_2708 2853201 - 2852734 - | AsnC family transcriptional regulator TERM 2937 2853302 - 2853284 - H 73 -12.4 -2.91912 | GCATCCAGGCACAGA CGGGCCGA AAT TCGGCCCA ATTGCCACGGAGAAA TM1040_2709 2853377 - 2854435 + | pyridoxal-5'-phosphate-dependent enzyme, beta subunit TM1040_2710 2854428 - 2855591 + | peptidase M24 TM1040_2711 2855588 - 2856346 + | Asp/Glu racemase TERM 2938 2856357 - 2856331 - T 100 -15.8 -4.57569 | opp_overlap 2856331 2856330 GCAGCTTGGCAAAAA GGCGGCGCAGCC CTG AGCCACGCCGCC CTTCTGATGCGTCCC TM1040_2712 2857500 - 2856397 - | peptidase M24 TERM 2939 2856648 - 2856619 - G 76 -6.3 -4.65895 | opp_overlap 2856634 2856635 GGTGCGATGCAAAAA GCGATCGCCGTAG CCTG CCGCCGCGATCAC GTCGCGCGCCGCCTT TERM 2940 2856934 - 2856916 - G 81 -8 -4.70772 | opp_overlap 2856922, overlap 2856918 ACAGACTGAACAAAA CTCCAGCG TCG CGCCGGCG GCAGTATATTCGGAT TERM 2941 2857569 - 2857542 - R 100 -11.2 -5.10968 | AGGAAGAGAGAAAAA GCGGGCCGCCAC GGAT GCAGCGACCCAC AGTCGGGGAGATTAC TM1040_2713 2859170 - 2857581 - | extracellular solute-binding protein TERM 2942 2858703 - 2858682 - G 82 -11.5 -3.96624 | opp_overlap 2858680 2858682 GACGTTCAGTACAAA CGCCGGAGA GAAG TCGCCGGCG TATTTCACGGTGACG TERM 2943 2858682 - 2858703 + g 72 -11.5 -3.36515 | opp_overlap 2858682, overlap 2858680 GACGTTCAGTACAAA CGCCGGAGA GAAG TCGCCGGCG TATTTCACGGTGACG TM1040_2714 2859830 - 2859216 - | XRE family transcriptional regulator TERM 2944 2859924 - 2859940 + H 88 -4.5 -5.4477 | opp_overlap 2859924, overlap 2859933 AGGCTACAAAAAAAA TTTTTGT CAG GCAAAAA TTTTTTTGCACATTT TERM 2945 2859940 - 2859924 - H 100 -3.8 -5.94713 | opp_overlap 2859924 2859933 AGGCTACAAAAAAAA TTTTTG TCAGG CAAAAA TTTTTTTGCACATTT TM1040_2715 2859969 - 2861120 + | binding-protein-dependent transport systems inner membrane component TM1040_2716 2861130 - 2862035 + | binding-protein-dependent transport systems inner membrane component TERM 2946 2862092 - 2862064 - g 79 -9.6 -4.19238 | gap 1 TTTGGAACTGGAAAA CCTGC-GCGTGAG CTTC CCCACGCCGCAAG GGCGCGTCGAGGTGG TERM 2947 2862543 - 2862591 + G 70 -12.3 -2.91264 | TCGCCATGATGCTGA TCCCGCGCCCGGATCTGCTGATC GCG GATGAGCCGACCTCGGCGCTGGA TGTCTCGGTGCAGGC TM1040_2717 2862032 - 2862871 + | ABC transporter related TM1040_2718 2862868 - 2863617 + | ABC transporter related TM1040_2719 2863621 - 2864109 + | hypothetical protein TERM 2948 2864120 - 2864149 + F 85 -12.9 -3.75378 | gap 1, opp_overlap 2864113 2864118 2864117 2864115 CCTGAAAAGACACCC GCGTATCCCGGACA AGG TG-CCGGGACACGC TTCTATTGTGACAGT TERM 2949 2864422 - 2864440 + G 77 -3.1 -4.89233 | overlap 2864424 CGCCAGCGCCTCGGC TGGGATC GCGCA GATCCTG TTTTTCATCTTCCTC TM1040_2720 2864282 - 2864500 + | hypothetical protein TERM 2950 2865032 - 2865017 - g 76 -6.1 -4.72272 | GCGTTTCACGAAAAA GCAGC TTGGAT GCTGC GGGCTTTGTCTGCCT TM1040_2721 2864555 - 2865052 + | Ferritin and Dps TERM 2951 2865068 - 2865109 + T 100 -22.3 -4.1721 | opp_overlap 2865070 2865071, overlap 2865070 2865071 GCCAGCAGTGATCCA AATCCGCGCCCCACACGCC CTCT GGTGTGTGGGGCGCGGCTA TTTTGAAATGTGGAT TERM 2952 2865107 - 2865070 - T 100 -22.7 -3.67296 | opp_overlap 2865070 2865068 2865071, overlap 2865071 CAGCAGTGATCCAAA TCCGCGCCCCACACGCC CTCT GGTGTGTGGGGCGCGGC TATTTTGAAATGTGG TERM 2953 2865070 - 2865107 + T 100 -24.9 -3.68378 | opp_overlap 2865070 2865071, overlap 2865068 2865071 CAGCAGTGATCCAAA TCCGCGCCCCACACGCC CTCT GGTGTGTGGGGCGCGGC TATTTTGAAATGTGG TERM 2954 2865106 - 2865071 - T 100 -26.2 -2.80056 | opp_overlap 2865070 2865068 2865071, overlap 2865070 AGCAGTGATCCAAAT CCGCGCCCCACACGCC CTCT GGTGTGTGGGGCGCGG CTATTTTGAAATGTG TERM 2955 2865071 - 2865106 + T 100 -28.4 -2.80545 | opp_overlap 2865071 2865070, overlap 2865070 2865068 AGCAGTGATCCAAAT CCGCGCCCCACACGCC CTCT GGTGTGTGGGGCGCGG CTATTTTGAAATGTG TERM 2956 2865190 - 2865165 - T 100 -14.7 -4.9725 | opp_overlap 2865165 AGTTCCATAGAAAAA GCCCCGGACCA ATCC TTGTCCGGGGC TTGTTGCGCGCTTTC TERM 2957 2865165 - 2865190 + T 86 -14.7 -3.64283 | opp_overlap 2865165 AGTTCCATAGAAAAA GCCCCGGACCA ATCC TTGTCCGGGGC TTGTTGCGCGCTTTC TM1040_2722 2866029 - 2865208 - | two-component response regulator TM1040_2723 2866340 - 2866897 + | RNA polymerase sigma factor TERM 2958 2867114 - 2867101 - g 76 -6.7 -4.56597 | GTCCGGCTGCAAAAA GAGGT CAAC ACCTC CAACAACCTCAGCCT TERM 2959 2867811 - 2867830 + G 85 -2.8 -5.41143 | gap 1, opp_overlap 2867811 2867813 2867816, overlap 2867814 2867816 CAGCCTGGCGCAAGA GACCAGCGC GCT GCGCTA-TC TTTTTTTGACACCTG TERM 2960 2867814 - 2867828 + G 71 -5.6 -4.34482 | opp_overlap 2867813 2867811 2867816, overlap 2867811 2867816 CCTGGCGCAAGAGAC CAGCGC GCT GCGCTA TCTTTTTTTGACACC TERM 2961 2868069 - 2868052 - g 70 -4.9 -4.57073 | gap 1, opp_overlap 2868052 2868061, overlap 2868053 2868054 2868067 2868068 TATGTGGCCGAAAAA CTGCTTCA TGA TGAAGC-G CATCTGTTTGACGCG TM1040_2724 2866903 - 2868744 + | signal transduction histidine kinase TM1040_2725 2869456 - 2868869 - | exopolysaccharide synthesis, ExoD TERM 2962 2869292 - 2869277 - G 74 -6.8 -4.3586 | GCACGCAGAGGAAAA CAGCGG AATG CCACTG AGCGGCGAGACCAAT TM1040_2726 2869670 - 2870158 + | hypothetical protein TERM 2963 2870313 - 2870337 + T 100 -18.6 -5.00884 | opp_overlap 2870313 AACCTCTTTGCACAA TCCCCGGCGC CCGCT GCGCCGGGGA TTTTTTACCCCGCCT TERM 2964 2870337 - 2870313 - T 95 -18.6 -3.29043 | opp_overlap 2870313 AACCTCTTTGCACAA TCCCCGGCGC CCGCT GCGCCGGGGA TTTTTTACCCCGCCT TM1040_2727 2871370 - 2870342 - | putative ammonia monooxygenase TM1040_2728 2872124 - 2871357 - | citrate synthase TERM 2965 2871494 - 2871474 - G 71 -6.7 -4.23758 | overlap 2871460 2871476 ACGCGACAGGCAAAA CAGCCCCCG CGC CAGAGGCGG GGCAAAGCCAAGCTC TM1040_2729 2873308 - 2872121 - | L-carnitine dehydratase/bile acid-inducible protein F TERM 2966 2873034 - 2873064 + g 71 -8.2 -4.03321 | opp_overlap 2873041 AGGACATCAGAGCTG CGGACAAGACGCTT GAG AAGCGCCTTGCCAG TTTCATGTTTCATGT TM1040_2730 2874818 - 2873298 - | hypothetical protein TERM 2967 2874857 - 2874846 - R 71 -7.2 -4.07877 | TTATCCGAGAAAGAA CGGC AAGG GCCG CAAGAAGATGCCCAG TM1040_2731 2875316 - 2874831 - | hypothetical protein TERM 2968 2875262 - 2875251 - G 70 -3.6 -4.60041 | ATCCATGGTGAAAAA GGCC GCAT AGCC ATAGGCCAGAGCGAT TERM 2969 2875384 - 2875355 - R 95 -16.4 -3.60098 | overlap 2875356 AGGGGGTACGGGAAA GGGTCCGGCGCC GGGAGT GGCGCCGGACCT AAGGTCACTGCTCGA TERM 2970 2875383 - 2875356 - R 95 -19.9 -2.75844 | overlap 2875355 GGGGGTACGGGAAAG GGTCCGGCGCC GGGAGT GGCGCCGGACC TAAGGTCACTGCTCG TM1040_2732 2876383 - 2875403 - | hypothetical protein TERM 2971 2875689 - 2875707 + g 71 -6.6 -4.27316 | GCCGGGACGCGCTCA TCCGCGGT CAC GCCGAGGA TTTTCACTTCGCCGG TERM 2972 2876419 - 2876406 - H 77 -9.5 -3.89346 | CTCCCATTTGACAAA CGCGC AAAA GCGCG ATCATGAATCATGGT TM1040_2733 2876423 - 2877151 + | two component transcriptional regulator TERM 2973 2877209 - 2877237 + G 72 -2.9 -4.81083 | overlap 2877214 TTATCCAGTTGCTGA CAGGGGCCGCGCT GTT GGCGGGGCTGATG TTTTTGGTGGTTCAG TM1040_2734 2877148 - 2878533 + | periplasmic sensor signal transduction histidine kinase TM1040_2735 2878629 - 2879540 + | putative iron(III) transport system substrate-binding protein TM1040_2736 2881929 - 2879545 - | transketolase, putative TM1040_2737 2883143 - 2881941 - | methionine gamma-lyase TM1040_2738 2883257 - 2883715 + | AsnC family transcriptional regulator TERM 2974 2883754 - 2883730 - T 75 -11.4 -3.41229 | opp_overlap 2883730 2883725 ACACCGGGATGACAA TGGCCCCGAG CGATC CCCGAGGCCA TTGGCTTGCCTTCCG TM1040_2739 2885655 - 2883772 - | Beta-N-acetylhexosaminidase TERM 2975 2884179 - 2884152 - G 75 -2.6 -4.90778 | overlap 2884172 TCCAGGCAAACAAAA GGCTGTGCTC GGGATCAA GACCACCGCC ATGGGCCACCTCTTC TM1040_2740 2886146 - 2885691 - | GCN5-related N-acetyltransferase TM1040_2741 2887068 - 2886139 - | ABC transporter related TM1040_2742 2887870 - 2887058 - | ABC transporter related TM1040_2743 2888775 - 2887867 - | binding-protein-dependent transport systems inner membrane component TM1040_2744 2889809 - 2888775 - | binding-protein-dependent transport systems inner membrane component TERM 2976 2889193 - 2889178 - G 89 -6.8 -5.03715 | ACCACCGGCAAAAAA CCGTGA TATG CCACGG ATGAGATGAACTCCC TERM 2977 2889297 - 2889287 - G 70 -4.6 -4.56702 | overlap 2889288 2889289 CCGCAAGGAAATAAA GCCC GCA GAGC GCGACGACCACGGCC TERM 2978 2889826 - 2889796 - G 100 -16.2 -4.07568 | overlap 2889797 TGTGGGGCGCCAAAA GCGGGACCACTCAT CAG ATGAGCGGTCCCGA AGGTCGGGGAGGAAT TERM 2979 2889825 - 2889797 - G 90 -19.7 -3.04398 | overlap 2889796 GTGGGGCGCCAAAAG CGGGACCACTCAT CAG ATGAGCGGTCCCG AAGGTCGGGGAGGAA TM1040_2745 2891496 - 2889841 - | extracellular solute-binding protein TERM 2980 2891883 - 2891931 + G 71 -5.9 -4.40804 | gap 1 CGCTCGCCTTTTGTT CACC-TTCCTCCTCGCGTCCGT TTTGCC GCTGACGCTGGGCGGGATGGTG TTTTATCGGCTGGTC TM1040_2746 2891848 - 2895138 + | multi-sensor hybrid histidine kinase TM1040_2747 2896046 - 2895144 - | RpiR family transcriptional regulator TERM 2981 2895752 - 2895774 + g 72 -12.7 -3.03124 | CACCACCTTCGGGAA CCTCGCGCT GACTG GGCGCGAGG TATTGCAGGCTCACG TM1040_2748 2896222 - 2896743 + | tripartite ATP-independent periplasmic transporter DctQ TM1040_2749 2896740 - 2898026 + | TRAP dicarboxylate transporter- DctM subunit TM1040_2750 2898076 - 2899119 + | TRAP dicarboxylate transporter, DctP subunit TERM 2982 2899718 - 2899753 + G 74 -3.1 -4.8048 | overlap 2899719 2899722 TTGAGCTGACACTGC GTGCGGTGCGAGGCG AAATCA CGCCTCGGATCTCGG TTTTTGATGTGCGCA TM1040_2751 2899183 - 2900649 + | hypothetical protein TM1040_2752 2900649 - 2901704 + | alanine racemase-like TM1040_2753 2901701 - 2902627 + | PfkB TM1040_2754 2902654 - 2903043 + | endoribonuclease L-PSP TERM 2983 2903076 - 2903103 + T 86 -14 -3.58726 | opp_overlap 2903078, overlap 2903077 CAACGATGCACAAAA AACGGGCCGCCC GATG GGGCGGCCCGAA TTCTGTCTGGAAGGC TERM 2984 2903077 - 2903102 + T 87 -17.5 -2.75022 | opp_overlap 2903078, overlap 2903076 AACGATGCACAAAAA ACGGGCCGCCC GATG GGGCGGCCCGA ATTCTGTCTGGAAGG TERM 2985 2903101 - 2903078 - T 100 -21 -5.28778 | opp_overlap 2903077 2903076 ACGATGCACAAAAAA CGGGCCGCCC GATG GGGCGGCCCG AATTCTGTCTGGAAG TM1040_2755 2904465 - 2903128 - | carboxyl-terminal protease TM1040_2756 2905576 - 2904473 - | peptidase M23B TM1040_2757 2907135 - 2905615 - | phosphoglyceromutase TM1040_2758 2907361 - 2907822 + | hypothetical protein TM1040_2759 2908299 - 2907826 - | acetyltransferase TERM 2986 2907970 - 2907923 - G 100 -10.7 -4.85782 | gap 3, overlap 2907924 2907955 TGGCGCAAAAAGAAA CGCCGCGC-GGCCTCGCTGGCTTC GAC AAAG--AGCGAGGCCAGCGCGAGG CTGCGCGCCTCATGC TERM 2987 2907979 - 2907924 - G 86 -13.3 -3.50746 | gap 2, overlap 2907923 2907955 GGCGCAAAAAGAAAC GCCGCGCGGCCTCGC--TGGCTTCG ACAAAGAG CGAGGCCAGCGCGAGGCTGCGCGCC TCATGCTCCAGTCGC TM1040_2760 2909255 - 2908299 - | ABC transporter related TERM 2988 2908798 - 2908784 - G 76 -5.6 -4.63218 | CCTTGCCCAACAAAA GCCTGC GCC GCATGC CGCCCGAGAGCGTAC TM1040_2761 2909299 - 2909481 + | hypothetical protein TM1040_2762 2909535 - 2910020 + | hypothetical protein TM1040_2763 2910621 - 2910088 - | hypothetical protein TM1040_2764 2910652 - 2913459 + | DNA polymerase I TM1040_2765 2914395 - 2913628 - | hydroxypyruvate isomerase TERM 2989 2914252 - 2914262 + g 74 -6.8 -4.41348 | opp_overlap 2914252 2914251, overlap 2914248 CCCATTGGCAAGAAG CGCA CGC TGCG TTTCTTTGGCGGCAA TERM 2990 2914453 - 2914466 + r 79 -3.7 -5.10163 | AGCACAGTCCCCGGG CGCGC GTGT GCGGG TTTTGTTTTAAACTT TM1040_2766 2915207 - 2914614 - | hypothetical protein TERM 2991 2915692 - 2915678 - g 76 -5.6 -4.68724 | overlap 2915680 CGATGCAAGAGAAAA CCGTGA CCG TCGCGG GCGCCGACCGGGCGT TERM 2992 2916070 - 2916018 - g 72 -14 -2.52464 | gap 1 CCCTGCTGCAAGTGA GCGCGTGGCGCAGACCGTGGCCTGG GGGC CCGGACCACGGGCGGCAC-AGGCGC TGATGCTGGCGGTGC TM1040_2767 2915260 - 2916267 + | ATPase TERM 2993 2916896 - 2916882 - g 71 -9.2 -3.72695 | opp_overlap 2916849 ATCGCGCTGAGCAAA GCCGCA GAT CGCGGC CTTCGAGGGGTGCTG TM1040_2768 2916264 - 2917172 + | hypothetical protein TM1040_2769 2917169 - 2919958 + | double-transmembrane region-like TERM 2994 2921010 - 2921028 + G 71 -5.3 -4.39889 | CAACCCGCGAGCTGT TCCTCGA AAAGA TTGAGGA TTTTGATCTCATTAT TM1040_2770 2920004 - 2922046 + | hypothetical protein TM1040_2771 2923147 - 2922245 - | hydratase/decarboxylase TM1040_2772 2925219 - 2923147 - | penicillin-binding protein 1C TERM 2995 2923732 - 2923694 - G 72 -12.3 -3.08813 | gap 1, overlap 2923692 2923697 TTGTAGGGCAACATA CCACCGCG-CGCCCCGGC GGGC GCCGGAGCATCGCGCAGG ATGTCCCCAAGATAC TERM 2996 2923885 - 2923909 + g 82 -12.8 -3.60098 | opp_overlap 2923884 2923883 2923881 ACTCACACCAACACC GCCGAGGCTG ACCGC CAGCCCCGGC TTTCCGCTAGGGAGT TERM 2997 2925282 - 2925248 - R 73 -12.1 -2.90723 | gap 1, opp_overlap 2925271 2925272 CGATCGGTAAGGACA CGCCCGGGCGCAGCAG AAGT CTGATGCGCCC-GCCG CTCAGCGGGCGCCCT TM1040_2773 2930771 - 2925324 - | alpha-2-macroglobulin-like TERM 2998 2925796 - 2925839 + g 71 -8.1 -4.13767 | gap 2, overlap 2925798 CCGATCCGCGTCAAC GTGATGTCGGTG-CTG-CGCC CAGA GGCGGCCGTCACCGACAGCTC TTTTGGGCTGCCCCC TERM 2999 2931121 - 2931108 - g 78 -4.5 -4.72729 | GAACGAAAATGAAAA GGTCA AAAG CGACC TCAACACAGCCAATG TM1040_2774 2930923 - 2933208 + | histidine kinase TM1040_2775 2934611 - 2933253 - | dihydrolipoamide dehydrogenase TERM 3000 2934393 - 2934418 + g 74 -12.5 -3.17598 | opp_overlap 2934393 2934392, overlap 2934391 GCCTGCGGCCGAAAT CCCAAGCGGGC CTGC GCCTGCATGGG TCATTTTGTAGAACT TM1040_2776 2935877 - 2934612 - | branched-chain alpha-keto acid dehydrogenase E2 component TM1040_2777 2936895 - 2935882 - | branched-chain alpha-keto acid dehydrogenase E1 component TM1040_2778 2938138 - 2936897 - | branched-chain alpha-keto acid dehydrogenase E1 component TERM 3001 2938078 - 2938062 - G 84 -5.7 -4.93696 | overlap 2938063 TCGAAATACGAAAAA TCAGGCG TAT CGCCCGG ACGGCAGCCCGGCTC TM1040_2779 2939205 - 2938135 - | Glu/Leu/Phe/Val dehydrogenase, dimerisation region TERM 3002 2939751 - 2939765 + G 71 -6.4 -4.2704 | overlap 2939752 GCGGTGCGGTCACGA TTTGCG CTG CGCAAG TTTATTGATCGTGCC TM1040_2780 2939325 - 2939792 + | AsnC family transcriptional regulator TERM 3003 2939815 - 2939845 + T 90 -16.8 -3.23638 | opp_overlap 2939815, overlap 2939805 AGTACCGCACAAAAA GAGACCGCGCCCAG ATC CTGGGCACGGCCTC TTCCTCGGTGTTTCG TERM 3004 2939845 - 2939815 - T 100 -21.2 -4.86001 | opp_overlap 2939805 2939815 AGTACCGCACAAAAA GAGACCGCGCCCAG ATC CTGGGCACGGCCTC TTCCTCGGTGTTTCG TM1040_2781 2941073 - 2939877 - | iron-containing alcohol dehydrogenase TERM 3005 2940210 - 2940236 + g 79 -8.6 -4.56775 | overlap 2940212 CGCGCCAATCGGGTG GCTCATGGCGTG AAT CGCGCCAAGACC TTTTTGGAACGCGGT TERM 3006 2940782 - 2940792 + g 75 -2.4 -4.98255 | opp_overlap 2940781, overlap 2940781 TGTAGGCCGCAACAC CCGC GTC GAGG TTTTTCTCGTTCGGG TM1040_2782 2942498 - 2941116 - | aldehyde dehydrogenase TERM 3007 2942551 - 2942606 + r 71 -8.9 -3.85698 | gap 2, opp_overlap 2942557 2942604, overlap 2942552 TTATCTTCATCTTCT CCCAAATATCC-C-GGGGGTGCGGGGG CTGG CCCCCGCCCGCCCAGCGGATATCAGGC TTTCTCAAACCCGCG TERM 3008 2942552 - 2942605 + r 73 -12.4 -2.91276 | gap 2, opp_overlap 2942557 2942604, overlap 2942551 TATCTTCATCTTCTC CCAAATATCC-C-GGGGGTGCGGGGG CTGG CCCCCGCCCGCCCAGCGGATATCAGG CTTTCTCAAACCCGC TERM 3009 2942600 - 2942557 - R 82 -13.9 -3.53444 | gap 2, opp_overlap 2942552 2942551 TCATCTTCTCCCAAA TATCC-C-GGGGGTGCGGGGG CTGG CCCCCGCCCGCCCAGCGGATA TCAGGCTTTCTCAAA TM1040_2783 2943953 - 2942601 - | L-glutamine synthetase TM1040_2784 2945063 - 2944029 - | twin-arginine translocation pathway signal TM1040_2785 2946437 - 2945118 - | TRAP C4-dicarboxylate transport system permease DctM subunit TM1040_2786 2947021 - 2946434 - | hypothetical protein TM1040_2787 2947791 - 2947018 - | N-formylglutamate amidohydrolase TERM 3010 2947276 - 2947262 - G 71 -7.8 -4.07687 | overlap 2947263 ATTGCCTTGGCAAAA CGGTCG TCG CGACCA TGCAGGAGACCAAGC TM1040_2788 2947896 - 2948753 + | RpiR family transcriptional regulator TM1040_2789 2948817 - 2949971 + | AMP-dependent synthetase and ligase TERM 3011 2950711 - 2950689 - g 93 -7.7 -5.08824 | gap 1, opp_overlap 2950688 2950708, overlap 2950690 TTGTGAGCGAAAAAA TCGCGCGGCG TCTG CGC-ACGCGA GGGCTTTCGCTGATT TM1040_2790 2949971 - 2951074 + | Acetyl-CoA C-acetyltransferase TERM 3012 2951087 - 2951107 + T 74 -10.3 -3.62572 | opp_overlap 2951087 TGAAAATGTGAAAAA GGCGCCGCG AAA TGCAGCGCC TTTCCAATCATCGTA TERM 3013 2951107 - 2951087 - T 100 -11.8 -4.7416 | opp_overlap 2951087 TGAAAATGTGAAAAA GGCGCCGC GAAAT GCAGCGCC TTTCCAATCATCGTA TM1040_2791 2953351 - 2951135 - | catalase/peroxidase HPI TERM 3014 2951538 - 2951557 + g 74 -6.4 -4.42062 | overlap 2951540 TTGTCGACCAGCATC TCCTCGGT GGAG ACCGAGAA TTTCTTTGGCGCGTA TERM 3015 2953542 - 2953531 - g 78 -3 -5.09221 | TATAAGAAAAACAAA TGAT CAAT ATCA CACTCAAGCAGCTCC TM1040_2792 2953530 - 2954453 + | LysR family transcriptional regulator TM1040_2793 2955251 - 2954463 - | carnitinyl-CoA dehydratase TM1040_2794 2957287 - 2955248 - | CoA-binding TERM 3016 2956936 - 2956958 + g 77 -12 -3.61268 | opp_overlap 2956905 2956906, overlap 2956929 GCATCGATCCTGCAG CCTCCAGCAG GTT CTGCTGCAGG TTTGCACCTTCGCTG TERM 3017 2957232 - 2957253 + g 71 -7.1 -4.24204 | opp_overlap 2957225 GCAAGACACCACGCA CCTCCGCCG ACAA CGGCGATGG TTTTGGGTCTAAATA TM1040_2795 2957608 - 2957294 - | SelT/selW/selH selenoprotein TM1040_2796 2958810 - 2957611 - | butyryl-CoA dehydrogenase TM1040_2797 2958859 - 2959806 + | transcriptional regulator TM1040_2798 2960235 - 2959852 - | arsenate reductase and related TM1040_2799 2960323 - 2962128 + | adenine deaminase TM1040_2800 2962121 - 2963587 + | AMP nucleosidase TERM 3018 2963778 - 2963753 - g 74 -7.5 -4.31692 | AACCGATGACCAAAA CTCAGCTTGTG GCAG CACTGGCTGAG GAAATGGACAGCGAC TM1040_2801 2963731 - 2964024 + | histone-like DNA-binding protein TERM 3019 2964055 - 2964076 + F 100 -15.1 -5.18371 | AGGCCAATGGCTTCG GGGCTGCCC TTTT GGGCGGCCC TTTTCTTTTGTACCA TM1040_2802 2964165 - 2965082 + | hypothetical protein TM1040_2803 2965204 - 2965653 + | methionine sulfoxide reductase B TM1040_2804 2965650 - 2966165 + | methionine sulfoxide reductase A TERM 3020 2966232 - 2966205 - T 71 -6.8 -4.31433 | opp_overlap 2966208, overlap 2966207 2966208 GATTCTTACAACAAA TAGGCCGCCTCC AGTT GGGGGCGGCTTT TGTTTGGTCGCTAAG TERM 3021 2966230 - 2966207 - T 71 -9.4 -3.75817 | opp_overlap 2966208, overlap 2966205 2966208 TTCTTACAACAAATA GGCCGCCTCC AGTT GGGGGCGGCT TTTGTTTGGTCGCTA TERM 3022 2966208 - 2966229 + T 100 -15.1 -4.9448 | opp_overlap 2966207 2966205 2966208 TCTTACAACAAATAG GCCGCCTCC AGTT GGGGGCGGC TTTTGTTTGGTCGCT TERM 3023 2966229 - 2966208 - T 74 -12.9 -2.85008 | opp_overlap 2966208, overlap 2966207 2966205 TCTTACAACAAATAG GCCGCCTCC AGTT GGGGGCGGC TTTTGTTTGGTCGCT TM1040_2805 2968249 - 2966243 - | hydantoinase/oxoprolinase TERM 3024 2966881 - 2966906 + g 70 -10.5 -3.48924 | gap 1 CGCCGCTCCCGACGC GGCGCTTGGCAA AGA TTGTCA-GCGCC TTGTGTGCCGCCTCA TM1040_2806 2969366 - 2968323 - | hypothetical protein TM1040_2807 2970821 - 2969475 - | 6-aminohexanoate-dimer hydrolase TM1040_2808 2972226 - 2970802 - | hypothetical protein TM1040_2809 2972936 - 2973763 + | diaminopimelate epimerase TERM 3025 2974486 - 2974476 - g 71 -6.8 -4.28361 | overlap 2974465 CGAAGTGGACGAAAA CCTG ATG CAGG CCATCGCCACAGAGC TERM 3026 2974594 - 2974570 - g 76 -10 -3.7795 | opp_overlap 2974570, overlap 2974571 CTAAAGCGGATGAAA CGGCGCCATC TGCGC GATGACGCCA TTCGGTTCACGGAGG TM1040_2810 2973760 - 2975025 + | MiaB-like tRNA modifying enzyme TERM 3027 2975130 - 2975103 - g 73 -10.6 -3.56643 | gap 1 TCCACACTCGCCAAA GCGATCAGAGAGG CTT CCTCCC-GACCGC TCCTGCATCTCTCCA TERM 3028 2975395 - 2975434 + G 89 -11.2 -4.14472 | gap 1, overlap 2975396 TCGAGACCCGCGAGG CCGCGCGCGGCGACCGCCC GGC GGGCAG-CGCAGCGCGGGA TTTTGAACATGTTCA TERM 3029 2975396 - 2975433 + G 80 -14.7 -3.08201 | gap 1, overlap 2975395 CGAGACCCGCGAGGC CGCGCGCGGCGACCGCCC GGC GGGCAG-CGCAGCGCGGG ATTTTGAACATGTTC TM1040_2811 2975043 - 2975564 + | hypothetical protein TERM 3030 2975656 - 2975679 + T 85 -12.4 -3.91072 | opp_overlap 2975656 TAGAATCAAAAAAAA CCCCCGCATC CGAA GATGCGAGGG TTTCTCAAACTTTCA TERM 3031 2975679 - 2975656 - T 100 -14.6 -5.98781 | opp_overlap 2975656 TAGAATCAAAAAAAA CCCCCGCATC CGAA GATGCGAGGG TTTCTCAAACTTTCA TERM 3032 2975720 - 2975744 + T 77 -8.5 -4.25056 | overlap 2975695 2975721 CTTAGGAGGTTTTCT TGCCTTTGTGC GGG GCCCAGAGGCG TTTGTTGGTGAGGTA TM1040_2812 2976497 - 2975706 - | cytochrome c1 TM1040_2813 2977844 - 2976516 - | cytochrome b/b6-like TM1040_2814 2978420 - 2977860 - | ubiquinol-cytochrome c reductase, iron-sulfur subunit TERM 3033 2978497 - 2978480 - R 74 -7.7 -4.19678 | gap 1, opp_overlap 2978480 TTACACCGCAATAAA CGCGG-TG ACT CAGCCGCG TGTCTAGCGATGCAA TM1040_2815 2979247 - 2978645 - | glutathione S-transferase-like TERM 3034 2979332 - 2979320 - R 75 -6.2 -4.62069 | GGGTGATCGCAAAAA CCGC ACAGA GCGG CTGGCATTTCGACGC TM1040_2816 2980060 - 2979365 - | ABC transporter related thiP 2981618 - 2980047 - | thiamine transporter membrane protein TERM 3035 2980222 - 2980211 - G 72 -2.2 -4.77036 | CTGGATCAGCAAAAA GTGC GATT ACAC CAAGATCGCCAAGCG TERM 3036 2980666 - 2980641 - G 79 -12.6 -3.42257 | overlap 2980633 CTGCAAAGAGACCAA TGCCGCGCTC CAGACC GAACGCGGCA GCGTCCAAAGCCCCG tbpA 2982574 - 2981594 - | thiamine transporter substrate binding subunit TERM 3037 2984073 - 2984085 + G 76 -9.1 -4.10612 | overlap 2984069 AGTGCCCGTGGCAGA GGCCA TGA TGGCC TTTGTGATTCTCGAT TM1040_2819 2983051 - 2984163 + | chorismate synthase TM1040_2820 2984942 - 2985931 + | 3-beta hydroxysteroid dehydrogenase/isomerase TERM 3038 2985961 - 2985980 + T 100 -11.4 -5.79595 | opp_overlap 2985961 CCTGGTGATTTGAAA GGTGCGAC CCAG GTCGCGCC TTTTTTGTTTTAGCC TM1040_2821 2986793 - 2985990 - | undecaprenyl-diphosphatase TM1040_2822 2987026 - 2988468 + | putative oxidoreductase TERM 3039 2990219 - 2990209 - g 71 -8.2 -4.12188 | TCATGAGCCTCAAAA CCCG GTT CGGG AACCTCAAGAACGTG TERM 3040 2990726 - 2990705 - g 71 -7.1 -4.18494 | CAGCCTCACCGAAAA CGTCGCGCG TTAC CGCGAGGCG ATTGACCAAGGTCTG TERM 3041 2993020 - 2992987 - g 85 -5.3 -5.1287 | overlap 2992988 2992989 2992991 GGGACAGCGAAAAAA CCCATTTCCTTCAGG TCTG CCCAAAGGAAATGCT GAACAAGCTGCCGCA TM1040_2823 2988543 - 2993075 + | glutamate synthase (NADPH) large subunit TERM 3042 2993117 - 2993141 + F 100 -13.6 -5.52384 | CGTCTTATTCCCTGA GCCCCGCAGA TCATT TCTGTGGGGC TTTTTTTGCTGAGCA TM1040_2824 2993220 - 2993963 + | monofunctional biosynthetic peptidoglycan transglycosylase TM1040_2825 2994033 - 2994698 + | glutathione S-transferase-like TM1040_2826 2996482 - 2994998 - | HemY-like TM1040_2827 2997812 - 2996493 - | hypothetical protein TM1040_2828 2998599 - 2997862 - | uroporphyrinogen III synthase HEM4 TERM 3043 2998110 - 2998083 - G 77 -4.1 -5.00616 | gap 1, overlap 2998084 2998097 TGCGCGGTGAAAAAA GCGGCAC-GATC AAGGG GATCTGCGCCGT CAGCGCAGCCTCTGC TM1040_2829 2998674 - 2999771 + | O-sialoglycoprotein endopeptidase TERM 3044 3000030 - 3000009 - g 100 -11.6 -5.08824 | opp_overlap 2999996 3000025 3000026 TTCCGATGCAAAAAA TGCGCGGT TTCCTG ACCGCGCA TCACGCAGCGCTTTC TERM 3045 3000440 - 3000464 + G 73 -10.6 -3.64682 | overlap 3000433 GCACTGGCCCGCGGT GCCCGGCCGG AAACG CTGGCAGGGC TTTCGGGGTTTGGTG TM1040_2830 2999768 - 3000730 + | glycerol-3-phosphate dehydrogenase (NAD(P)+) TM1040_2831 3000732 - 3001004 + | YciI-like protein TM1040_2832 3001004 - 3001426 + | hypothetical protein TERM 3046 3001500 - 3001518 + G 84 -10.2 -4.15044 | overlap 3001501 AATTCTCAGCGTAAT TGCCGCGA CCA TCGCGGCC TTTGTTGCGGGCGCG TERM 3047 3001501 - 3001517 + G 76 -13.7 -3.08812 | overlap 3001500 ATTCTCAGCGTAATT GCCGCGA CCA TCGCGGC CTTTGTTGCGGGCGC TM1040_2833 3001480 - 3001875 + | hypothetical protein TERM 3048 3001928 - 3001895 - T 95 -15.3 -3.72893 | opp_overlap 3001901, overlap 3001901 GAGTGTTGTACCAAA GCAAAAGGCCGCTGC TGAT GCCGCGGCCTTTTCC CACTCAACGCCCACT TERM 3049 3001901 - 3001922 + T 91 -12.9 -4.11216 | opp_overlap 3001895 3001901 TGTACCAAAGCAAAA GGCCGCTGC TGAT GCCGCGGCC TTTTCCCACTCAACG TERM 3050 3001922 - 3001901 - T 95 -12.9 -4.58773 | opp_overlap 3001901, overlap 3001895 TGTACCAAAGCAAAA GGCCGCTGC TGAT GCCGCGGCC TTTTCCCACTCAACG TM1040_2834 3002417 - 3002076 - | hypothetical protein TERM 3051 3002347 - 3002363 + g 74 -6.5 -4.31433 | overlap 3002349 GTCAAAAGATCCATG TCTGGCG TCA CGCCACA TTTGTTCTGCAGATC TERM 3052 3002452 - 3002466 + r 71 -4.3 -4.62069 | GGACGTGTTCTTACA TTCAG CATTA CTGAA TTTTTACGGTAGGCA TERM 3053 3002543 - 3002530 - R 84 -6.7 -4.98616 | CCAAAACATCAAAAA TGAGC TCCG GCTCA CGTCACGAGAGCGCA TERM 3054 3002619 - 3002590 - R 74 -12.2 -3.15579 | opp_overlap 3002595 3002596, overlap 3002596 TCAAGCCGTTACCAA GAAAAACCCGGC ACACAG GCCGGGGTTTTC CAAATCATCAAATGA TERM 3055 3002613 - 3002596 - R 100 -9.8 -5.1356 | opp_overlap 3002595 3002596, overlap 3002590 CGTTACCAAGAAAAA CCCGGC ACACAG GCCGGG GTTTTCCAAATCATC TM1040_2835 3004027 - 3002642 - | S-adenosyl-L-homocysteine hydrolase TERM 3056 3004141 - 3004152 + H 78 -5.8 -4.83715 | overlap 3004138 CGGTGGATCATCGCG CAGC TTTC GCTG TTGTTTTTTTGGCTT TM1040_2836 3004294 - 3004902 + | metal dependent phosphohydrolase TM1040_2837 3006122 - 3004905 - | hypothetical protein TERM 3057 3004959 - 3004986 + g 75 -8.4 -4.25104 | gap 1, overlap 3004963 GGCGTGTCTTGCTGC GCGACGGGCGCGA CGC TC-CGCCCGTTCC TTTTCCTCGCGCGCC TERM 3058 3004963 - 3004982 + g 76 -10 -3.71672 | gap 1, overlap 3004959 TGTCTTGCTGCGCGA CGGGCGCGA CGC TC-CGCCCG TTCCTTTTCCTCGCG TM1040_2838 3006685 - 3006131 - | response regulator receiver protein TM1040_2839 3007389 - 3006766 - | electron transport protein SCO1/SenC TERM 3059 3006863 - 3006845 - G 74 -5.3 -4.47485 | overlap 3006846 AAAAAGTCCACAAAA CCGTGTT CGGGC AACACGA GGTAGGACATGGTGG TM1040_2840 3007508 - 3008905 + | periplasmic sensor signal transduction histidine kinase TERM 3060 3009125 - 3009138 + G 79 -8.1 -4.49756 | GCTGATCGCCGATGG CCGCA CGGA TGCGG TTTTCCTATTTGACG TM1040_2841 3008991 - 3010541 + | hypothetical protein TERM 3061 3010689 - 3010637 - g 73 -10.6 -3.60661 | gap 2, opp_overlap 3010644 3010648, overlap 3010650 GACGCAACCACAGAA TTG-GCTCGAC-ACATCGCCCGGATC CTC GTTCCGGGCGATGTTGTCTTGCTCCA GGGCCCAATCGGCGC TERM 3062 3010644 - 3010681 + G 91 -19.3 -3.14132 | gap 1, opp_overlap 3010637 3010650, overlap 3010648 CCACAGAATTGGCTC GAC-ACATCGCCCGGATC CTC GTTCCGGGCGATGTTGTC TTGCTCCAGGGCCCA TERM 3063 3010648 - 3010676 + G 100 -18.9 -3.71284 | opp_overlap 3010637 3010650, overlap 3010644 AGAATTGGCTCGACA CATCGCCCGGATC CTC GTTCCGGGCGATG TTGTCTTGCTCCAGG TERM 3064 3010674 - 3010650 - g 81 -15.7 -2.87463 | opp_overlap 3010648 3010644, overlap 3010637 AATTGGCTCGACACA TCGCCCGGATC CTC GTTCCGGGCGA TGTTGTCTTGCTCCA TM1040_2842 3010583 - 3011059 + | hypothetical protein TM1040_2843 3011056 - 3012054 + | aminoglycoside phosphotransferase TM1040_2844 3012051 - 3012731 + | nucleotidyl transferase TM1040_2845 3012733 - 3015666 + | hypothetical protein TERM 3065 3015760 - 3015811 + G 76 -12.3 -3.33525 | opp_overlap 3015759, overlap 3015758 CGGGCAAGACCAAGG TGCTCACGGATC-GCGTCGCGCGGC TGTT GCTGCGCGGCGTTGAGCCGC-AGCA TATTCTCTGCCTGAC TERM 3066 3016519 - 3016498 - g 76 -8.7 -4.11216 | TCCTTACCGGCAAAA GCGCCAAAG ATCC CTTCAGCGC CAAGATAGGCAGCTT TERM 3067 3016639 - 3016656 + G 70 -9.9 -3.42124 | GGCTCGCACTGGATG CGATGGA AAAA TCCATCG TTCTGCATGATTTTG TM1040_2846 3015663 - 3019028 + | UvrD/REP helicase TM1040_2847 3019090 - 3019410 + | thioredoxin TERM 3068 3019463 - 3019432 - T 75 -11.6 -3.38696 | opp_overlap 3019437, overlap 3019437 ACCCAGATAAACATA GAAAAGGCGCGTCC CTCG GGAGGCGCCTTTTT TCATGAGAATGTGGA TERM 3069 3019458 - 3019437 - T 100 -11.5 -4.76423 | opp_overlap 3019437, overlap 3019432 GATAAACATAGAAAA GGCGCGTCC CTCG GGAGGCGCC TTTTTTCATGAGAAT TERM 3070 3019437 - 3019458 + T 100 -11.5 -5.14965 | opp_overlap 3019432 3019437 GATAAACATAGAAAA GGCGCGTCC CTCG GGAGGCGCC TTTTTTCATGAGAAT TERM 3071 3019527 - 3019495 - T 100 -14.9 -4.40358 | opp_overlap 3019499 3019501, overlap 3019501 AGCCACCCCACAAAA GGAAAAGCCGCCCTG CGT CAGGACGGCTCTTAC TTCACCAGATATGTC TERM 3072 3019521 - 3019501 - T 100 -14.7 -4.73108 | opp_overlap 3019499 3019501, overlap 3019495 CCCACAAAAGGAAAA GCCGCCCTG CGT CAGGACGGC TCTTACTTCACCAGA TERM 3073 3019501 - 3019521 + T 78 -12.5 -3.23853 | opp_overlap 3019501 3019495, overlap 3019499 CCCACAAAAGGAAAA GCCGCCCTG CGT CAGGACGGC TCTTACTTCACCAGA TM1040_2848 3019745 - 3019551 - | hypothetical protein TM1040_2849 3019981 - 3020538 + | ATP-dependent protease peptidase subunit TM1040_2850 3020535 - 3021590 + | hypothetical protein TERM 3074 3022247 - 3022229 - g 78 -6.6 -4.7173 | TACCACACGCAAAAA GCTCACCG TTG CAGAGAGC TATGACGTGTTGATC TERM 3075 3022684 - 3022674 - g 84 -5.4 -4.96848 | overlap 3022680 TTGGGCACAGAAAAA GTCA AAG TGAC CTTCACCAAGGACGG hslU 3021606 - 3022916 + | ATP-dependent protease ATP-binding subunit TERM 3076 3023287 - 3023319 + G 73 -9.7 -3.85698 | opp_overlap 3023283 ATTGCCGAAGAGCTA CCGGTCGCGAGTGTC AGT GACCTTCGGGCCCGG TTTCTGCGCGAGCAG TM1040_2852 3022996 - 3024117 + | protein of unknown function DUF900, hydrolase-like TERM 3077 3024131 - 3024111 - T 71 -11.1 -3.15574 | overlap 3024109 GCAACGGCAGGAAGA GCGCTGAGG ACA CGTCAGCGC GTGCGTCTCAAATAG TM1040_2853 3024727 - 3024125 - | Smr protein/MutS2 TERM 3078 3024625 - 3024635 + g 85 -2.4 -5.43866 | TAGGGGGGTCTGCAT GGTC TCC GCCC TTTTTTTCGCGGTTG TM1040_2854 3025785 - 3024727 - | MltA TERM 3079 3025757 - 3025734 - G 75 -2.2 -5.00616 | overlap 3025735 3025736 3025750 CGGCGCCGGAAAAAA GGGCTGCGGT TAAT AACGCCGCGC CAAGTCCATGCCGAA TM1040_2855 3026438 - 3025782 - | import inner membrane translocase, subunit Tim44 TM1040_2856 3026553 - 3027050 + | FxsA cytoplasmic membrane protein TERM 3080 3027527 - 3027539 + G 70 -3.4 -4.6971 | TCCCGCCGCTGAACC TCGA CAACA TCGA TTTTGTTGCAATTTA TM1040_2857 3027115 - 3027609 + | preprotein translocase subunit SecB TERM 3081 3027640 - 3027664 + T 100 -17.9 -4.8622 | TCAATTAAAGCTCTG GCGCTGCGATC AAA GATCGCGGCGC TTTTTCATTCCGAGG TM1040_2858 3028400 - 3027669 - | DNA polymerase III, epsilon subunit TM1040_2859 3028986 - 3028393 - | dephospho-CoA kinase TERM 3082 3028849 - 3028860 + g 71 -7.2 -4.18018 | overlap 3028842 CCCGATAGGCGTGAC GGCG GCCC CGCC TTTTGCATAGAGCGC TM1040_2860 3029816 - 3028986 - | shikimate 5-dehydrogenase TM1040_2861 3030412 - 3029813 - | Maf-like protein TM1040_2862 3030831 - 3031286 + | hypothetical protein rho 3031417 - 3032688 + | transcription termination factor Rho TERM 3083 3032842 - 3032815 - g 73 -4.2 -4.59109 | gap 2, opp_overlap 3032816 3032831, overlap 3032819 GAGATCGGCGAAAAA CTAACGCGCAGG ACGCTA CCTGCGCG--AG GTATGATATTTTCAA TERM 3084 3032840 - 3032819 - g 85 -13 -3.80855 | opp_overlap 3032816 3032831, overlap 3032815 TCGGCGAAAAACTAA CGCGCAGG ACGCTA CCTGCGCG AGGTATGATATTTTC trmE 3032719 - 3034005 + | tRNA modification GTPase TrmE TM1040_2865 3034009 - 3035892 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TM1040_2866 3035889 - 3036506 + | methyltransferase GidB TM1040_2867 3036499 - 3037311 + | chromosome segregation ATPase TM1040_2868 3037330 - 3038229 + | chromosome segregation DNA-binding protein TM1040_2869 3038572 - 3038219 - | hypothetical protein TERM 3085 3038352 - 3038326 - G 100 -7.9 -5.56264 | opp_overlap 3038328, overlap 3038328 TCGAAATAGAAAAAA CAGCGGCGACC GAAAG GGTGGCCGCTT TTTTTGCGGATGGAC TERM 3086 3038328 - 3038350 + g 100 -10.5 -5.42259 | opp_overlap 3038326 3038328 GAAATAGAAAAAACA GCGGCGACC GAAAG GGTGGCCGC TTTTTTTGCGGATGG TERM 3087 3038350 - 3038328 - G 87 -10.5 -4.40478 | opp_overlap 3038328, overlap 3038326 GAAATAGAAAAAACA GCGGCGACC GAAAG GGTGGCCGC TTTTTTTGCGGATGG TM1040_2870 3039730 - 3038576 - | coproporphyrinogen III oxidase TM1040_2871 3040337 - 3039723 - | putative deoxyribonucleotide triphosphate pyrophosphatase TM1040_2872 3041047 - 3040334 - | RNAse PH hrcA 3041186 - 3042250 + | heat-inducible transcription repressor TM1040_2874 3042260 - 3042823 + | GrpE protein TERM 3088 3042847 - 3042830 - T 95 -12.7 -4.67048 | GCATCCTAAAAGAAA TGGGCCC TGAC GGGCCCA TGCCTCCGGCGGAGG TERM 3089 3042909 - 3042875 - T 100 -10.1 -4.88067 | opp_overlap 3042883, overlap 3042883 AGGTATTTAGAAAAA GATGAAAGGGCGG-CCG TTT CGGACCGCC-TTTCTTC TTAACCCTTGCTTAC TERM 3090 3042883 - 3042902 + T 91 -11.4 -4.45068 | gap 1, opp_overlap 3042875 3042883 AGAAAAAGATGAAAG GGCGG-CCG TTT CGGACCGCC TTTCTTCTTAACCCT TERM 3091 3042902 - 3042883 - T 71 -11.4 -3.08068 | gap 1, opp_overlap 3042883, overlap 3042875 AGAAAAAGATGAAAG GGCGG-CCG TTT CGGACCGCC TTTCTTCTTAACCCT TM1040_2875 3045549 - 3042910 - | DNA mismatch repair protein TERM 3092 3044166 - 3044178 + g 90 -6.3 -5.24129 | GTGAGCTGATTCCCG TATGC TCT GCATA TTTTTTCTGCAGACC TERM 3093 3045650 - 3045621 - R 100 -13.5 -4.87133 | opp_overlap 3045622, overlap 3045607 3045622 ACCCGGCAAACAAAA TGCCGAGCCCCGC CTGT GCGGAACTCGGCT TGATGGGATGGTTTC TERM 3094 3045622 - 3045649 + r 75 -12.6 -3.17956 | opp_overlap 3045607 3045621 3045622 CCCGGCAAACAAAAT GCCGAGCCCCGC CTGT GCGGAACTCGGC TTGATGGGATGGTTT TERM 3095 3045649 - 3045622 - R 95 -17 -3.51557 | opp_overlap 3045622, overlap 3045607 3045621 CCCGGCAAACAAAAT GCCGAGCCCCGC CTGT GCGGAACTCGGC TTGATGGGATGGTTT TM1040_2876 3046518 - 3045670 - | flagellin-like TM1040_2877 3046844 - 3049099 + | malic enzyme TERM 3096 3049570 - 3049597 + G 75 -7.7 -4.25104 | gap 2, overlap 3049574 TGGGGCGCAAACTGG GGCTGCGCGTCGC ATAT GCGGCG-GC-GCC TTTTGATGCGGCAGC TM1040_2878 3049119 - 3049991 + | PfkB TERM 3097 3050021 - 3050037 + T 100 -10.8 -5.3236 | opp_overlap 3050010 3050020 3050021 AGAACCACCAAGAAG GGGGCC CTAGC GGCCCC TTTTTTATGAGTTAT TERM 3098 3050089 - 3050077 - T 79 -10.5 -3.90588 | TAGCTTCCAATGAAA GGCGC ATC GCGCC CCCAAAGCTCTGCAA TM1040_2879 3050723 - 3050052 - | peptide methionine sulfoxide reductase TM1040_2880 3051143 - 3050862 - | sterol-binding TERM 3099 3050951 - 3050967 + g 78 -5.1 -4.7416 | overlap 3050950 CCGTCATCGGGTTGA GCTGC CCGCGCA GCAGC TTTTTCAGATTTTCG TM1040_2881 3051620 - 3051234 - | hypothetical protein TERM 3100 3051314 - 3051291 - G 83 -4.5 -5.05782 | gap 1, opp_overlap 3051301, overlap 3051293 ATCGACCTCAAAAAA GC-CGCCGGT CTTGT ACCCGCGTGC GGTGCAATTTTCATC TM1040_2882 3052183 - 3051722 - | hypothetical protein TERM 3101 3052022 - 3052065 + g 75 -13.3 -2.8585 | gap 1, opp_overlap 3052031, overlap 3052031 GCCGAGGCTGGCCAA CTGGGGAAA-GACGAACCAC ATCCA GTGGCTCGTCTTTTTCCCGG CTTTGAGTTCGGTGA TERM 3102 3052055 - 3052031 - G 82 -12.2 -3.57561 | opp_overlap 3052022 3052031 GGCCAACTGGGGAAA GACGAACCAC ATCCA GTGGCTCGTC TTTTTCCCGGCTTTG TERM 3103 3052031 - 3052055 + g 89 -10 -4.60924 | opp_overlap 3052031, overlap 3052022 GGCCAACTGGGGAAA GACGAACCAC ATCCA GTGGCTCGTC TTTTTCCCGGCTTTG TM1040_2883 3053406 - 3052183 - | argininosuccinate synthase TERM 3104 3053239 - 3053253 + g 93 -5.6 -5.52384 | GTTTTCGGGTTTAAT GCCGAG AAG CTCTGC TTTTTTTCGTGCAGG TM1040_2884 3053537 - 3054292 + | hypothetical protein TM1040_2885 3054365 - 3055591 + | threonine dehydratase TM1040_2886 3055979 - 3055623 - | Hpt protein TERM 3105 3056755 - 3056776 + G 71 -6.5 -4.28548 | GGTCGGAATGTTCTC GCCGGGG ATCAATCG CCTCGGC TTTTACTCCATCGAT TM1040_2887 3056120 - 3057391 + | response regulator receiver modulated serine phosphatase TM1040_2888 3057841 - 3057398 - | NUDIX hydrolase TM1040_2889 3057918 - 3058895 + | Hsp33 protein TERM 3106 3058991 - 3059019 + G 86 -18.1 -2.82635 | opp_overlap 3058984 3058983 CCGGAAACCGTGCTG CCTGCGGGGCGGA AGT TGCGCCCCGCGGG TGTGCTCGTCGGAAT TERM 3107 3059200 - 3059187 - g 75 -8.1 -4.15788 | AAGCGTGGGAAGAAA TCGCG TTGC CGCGA GAGCTGCCTCGAATC TERM 3108 3059228 - 3059251 + G 82 -12.4 -3.59979 | ATCCTCGGTCATTTG CCCTGCCACG AAAC CGTGACAGGG TTTCAAGTGACCCCC TM1040_2890 3058901 - 3059500 + | NUDIX hydrolase TM1040_2891 3059497 - 3060657 + | polynucleotide adenylyltransferase region TERM 3109 3061347 - 3061327 - g 73 -10.3 -3.68529 | opp_overlap 3061327 ACCGTATCATGCAAA CGCCGCCCG CTG CGGGCGAGG TCGTATTTCAGGTCT TM1040_2892 3060885 - 3062723 + | ABC transporter related TM1040_2893 3062720 - 3064564 + | ABC transporter related TM1040_2894 3064623 - 3065867 + | 23S rRNA (uracil-5-)-methyltransferase RumA TM1040_2895 3065895 - 3066680 + | Ion transport protein TM1040_2896 3066782 - 3067270 + | ErfK/YbiS/YcfS/YnhG TERM 3110 3067334 - 3067311 - T 88 -10.3 -4.48483 | gap 1, opp_overlap 3067311 CAGAAGAAACACAAA GGCCGCTCTC GAAGT GAG-GCGGCC TTTTGGATTTGGAAC TERM 3111 3067311 - 3067334 + T 89 -11 -4.35524 | gap 1, opp_overlap 3067311 CAGAAGAAACACAAA GGCCGCTCTCG AAG TGAG-GCGGCC TTTTGGATTTGGAAC TM1040_2897 3067907 - 3067377 - | Allergen V5/Tpx-1 related TM1040_2898 3068040 - 3068657 + | twin-arginine translocation pathway signal TM1040_2899 3068800 - 3068982 + | hypothetical protein TERM 3112 3069033 - 3068998 - T 100 -14.8 -4.17048 | opp_overlap 3069005, overlap 3069003 3069005 TCGTTGCCAAAAGAA TAAAAGAGGCGGCTGG AACC CCAGCCGCCTTTTTTT GTGTCCACAGGTTTG TERM 3113 3069028 - 3069003 - T 100 -14.7 -5.093 | opp_overlap 3069005, overlap 3068998 3069005 GCCAAAAGAATAAAA GAGGCGGCTGG AACC CCAGCCGCCTT TTTTTGTGTCCACAG TERM 3114 3069005 - 3069026 + T 100 -17.3 -5.71712 | opp_overlap 3069003 3068998 3069005 CAAAAGAATAAAAGA GGCGGCTGG AACC CCAGCCGCC TTTTTTTGTGTCCAC TERM 3115 3069026 - 3069005 - T 100 -17.3 -4.15118 | opp_overlap 3069005, overlap 3069003 3068998 CAAAAGAATAAAAGA GGCGGCTGG AACC CCAGCCGCC TTTTTTTGTGTCCAC hemH 3070134 - 3069070 - | ferrochelatase TM1040_2901 3071075 - 3070236 - | hypothetical protein TERM 3116 3071054 - 3071066 + g 74 -5.5 -4.46926 | overlap 3071051 CAAAGATCTGGGGAT GAGCC ATC GGTTC TTTTGTCATGAGGTG TM1040_2902 3071087 - 3071818 + | competence protein F, putative TERM 3117 3071917 - 3071927 + G 72 -2.4 -4.82901 | GAAATCTACACTTCT CCCC TCT GCGG TTTTTGTCACGCCGC TM1040_2903 3071890 - 3072147 + | glutaredoxin GrxC TERM 3118 3072250 - 3072205 - g 77 -11.9 -3.65812 | gap 1, opp_overlap 3072243 CTTGCCGGAAGAGAA CCTTGCAGCGGC-GCGCG AAATGATCGCG CGCACGGCCGCTGCAGGG GCGCAGTTTGTGTTG TERM 3119 3072430 - 3072451 + G 80 -10.1 -4.13654 | AACCACCGATGCGGA CGGCCGGTT TGCC AACCGGCAG TTTCTGATTTCCCCC TERM 3120 3072946 - 3072931 - g 76 -6 -4.59853 | overlap 3072933 3072941 3072942 CGAAGCGGTGAAAAA GGCGCG CAAA CGCGTC CCGTCTCTGACGCAC TM1040_2904 3072152 - 3072985 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TM1040_2905 3072985 - 3073425 + | MarR family transcriptional regulator TERM 3121 3073464 - 3073487 + T 100 -14.6 -5.24129 | opp_overlap 3073464 CGGACCAAACAAAAA GAGCGTCGGG TAAT TCCGACGCTC TTTTTTCTGGAGGGG TERM 3122 3073487 - 3073464 - T 100 -13.9 -5.33405 | opp_overlap 3073464 CGGACCAAACAAAAA GAGCGTCGG GTAATT CCGACGCTC TTTTTTCTGGAGGGG TM1040_2906 3074475 - 3073732 - | 3-demethylubiquinone-9 3-methyltransferase TERM 3123 3074704 - 3074718 + G 71 -9.2 -3.73042 | overlap 3074702 GGTGGTGGTACCAGC CCGGCG ATG CGTCGG TATTTTGATCCAAAG TM1040_2907 3074527 - 3075507 + | prolyl aminopeptidase TM1040_2908 3075504 - 3076355 + | peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein TERM 3124 3076556 - 3076569 + F 100 -9.5 -5.88197 | TTTGATTGATTTCGA CGGGC CGCG GCCCG TTTTTTTGTGTTTGG TERM 3125 3077099 - 3077120 + G 81 -13.7 -3.28712 | opp_overlap 3077095 3077094 ATCAAGGAAATGCTG CGCCAGCGG AAGG CCGCTGGTG TTCTGAACGAAGACG TM1040_2909 3076592 - 3077203 + | hypothetical protein TERM 3126 3077757 - 3077726 - g 70 -4.2 -4.5442 | opp_overlap 3077727, overlap 3077727 GTCGCAACGAGAAAA TCGGCCGTGAGAGC TATC GCCCGAACGACCGT ATTCGCTGCTTCATC nusA 3077203 - 3078819 + | transcription elongation factor NusA TERM 3127 3078888 - 3078873 - g 78 -4.6 -4.82901 | overlap 3078874 GGTGGTGCAGAAAAA TCCCGT AACG ACGGGC CGGAACGTAAATGTC TERM 3128 3078920 - 3078900 - g 95 -15.5 -3.75153 | opp_overlap 3078914 3078919 GGGCCGGAACGTAAA TGTCTCGCC ACC GGCGAGACA CAGCCCAAGGCTGGG TM1040_2911 3078849 - 3079466 + | hypothetical protein TERM 3129 3079799 - 3079778 - g 81 -5.7 -4.72986 | GAGGCCGAGGAAAAA GCCCGCGCC GAAG AGCGTGAGC GCCGCCGTGCCGAAC infB 3079475 - 3081982 + | translation initiation factor IF-2 TERM 3130 3082015 - 3082036 + T 86 -10.8 -4.35524 | opp_overlap 3082010 3082015 CGCCAAGATAGAAAA CCCCGGTC CGCTGT GGCCGGGG TTTTACGTTTCAGAG TERM 3131 3082036 - 3082015 - T 83 -9.4 -4.67943 | gap 1, opp_overlap 3082015, overlap 3082010 CGCCAAGATAGAAAA CCCCGGTCC GCTGT GG-CCGGGG TTTTACGTTTCAGAG TM1040_2913 3082383 - 3082087 - | hypothetical protein TERM 3132 3082152 - 3082122 - G 100 -16.2 -5.84432 | CAGAAGATAAAAAAA CCGAAGACGATGCT GCC AGCCTCGTCTCCGG TCCAAAGTTGATGGT TERM 3133 3082479 - 3082452 - R 100 -15 -4.28977 | opp_overlap 3082451 ACAACATATGGAAAA CCCCAGATCTAC GCAC ATAGATCTGGGG CTCTGATGGAGAATT TM1040_2914 3082922 - 3082512 - | mutator mutT protein argJ 3084145 - 3082919 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein TERM 3134 3084007 - 3083981 - G 74 -10.9 -3.55444 | gap 1 TGCGGAGCGGGTAAA GACCCCGGCGAC AGAG GT-GCCGGGATC CATGACGGCCAACAT TM1040_2916 3085029 - 3084178 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3135 3085258 - 3085236 - g 79 -8.5 -4.57341 | gap 1 AACTCTCGCCAAAAA GGTC-TTCGG AACA CCGAACGACC GCAAAATCAAGGCGA TERM 3136 3087490 - 3087480 - g 74 -6.8 -4.29325 | overlap 3087483 GAGCAACATCGAAAA GCAG GTG CTGC TGCAGACCATCGACG TM1040_2917 3085207 - 3087894 + | preprotein translocase subunit SecA TERM 3137 3088470 - 3088494 + G 70 -12.2 -2.96216 | TGTTATTGCGGACTT CGCATCAGGG CGCGA CCTTGATGCG TCTGTGATGGTCGAG TM1040_2918 3088030 - 3088926 + | hypothetical protein TERM 3138 3088958 - 3088988 + G 70 -3.1 -4.70879 | overlap 3088959 3088961 3088963 ATTTCTCATGAGCTA TTACCGTGCGGCG GTCTG CGCCGCACTCTGC TTTTTCAGCTTTGGC TERM 3139 3088963 - 3088983 + G 78 -14 -3.18433 | overlap 3088961 3088959 3088958 TCATGAGCTATTACC GTGCGGCG GTCTG CGCCGCAC TCTGCTTTTTCAGCT TM1040_2919 3088950 - 3090503 + | OmpA/MotB TM1040_2920 3092599 - 3090662 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 3140 3091716 - 3091733 + g 73 -4.8 -4.72272 | CGCGCCACTTCCGCC GGGCGA TAGCCT TTGCCC TTTTTGGTAACGGCA TERM 3141 3092287 - 3092252 - G 86 -13.4 -3.53091 | gap 1, opp_overlap 3092262, overlap 3092262 ATGCGCTGCGCCAAA GGGGTCA-AAAGCGCTC TCG GAGCGCTTCGTGAACCC CGACAGACCATCCTT TERM 3142 3092276 - 3092262 - G 84 -11.4 -4.12942 | opp_overlap 3092262, overlap 3092252 CCAAAGGGGTCAAAA GCGCTC TCG GAGCGC TTCGTGAACCCCGAC TM1040_2921 3093493 - 3092630 - | farnesyl-diphosphate synthase TERM 3143 3093504 - 3093528 + r 70 -12.1 -2.54387 | opp_overlap 3093514 GTCATACGGTCTTAT CCGGCATCAAG CGG CTGGGTGCCGG TGGGTTGGCCGTTTG TM1040_2922 3093745 - 3093500 - | exodeoxyribonuclease VII small subunit TM1040_2923 3094668 - 3093742 - | histone deacetylase superfamily protein TERM 3144 3094289 - 3094279 - G 72 -2.4 -4.74013 | opp_overlap 3094279, overlap 3094270 3094272 TCCAAACAGACAAAA CCCC ATG GGCG TGTCTGTCTCCGCGT TERM 3145 3094596 - 3094560 - G 79 -12.9 -3.41745 | opp_overlap 3094585 3094588 CCCGTACAAGATCAA GCCCGGCGAGTGCATGT AGC ACATGCTCCAGCCGCGC CACCTGCTCAGGGTG TM1040_2924 3095492 - 3094788 - | two component transcriptional regulator TM1040_2925 3096001 - 3095489 - | MarR family transcriptional regulator TM1040_2926 3096162 - 3097028 + | branched-chain amino acid aminotransferase TERM 3146 3097055 - 3097078 + T 100 -10.9 -5.26875 | opp_overlap 3097055 TCTAAAATTAAAAAA GCGCGGAGC CGAAAC GCCCCGCGC TTTTTTAATTCAACC TERM 3147 3097078 - 3097055 - T 100 -13.1 -5.46698 | opp_overlap 3097055 TCTAAAATTAAAAAA GCGCGGAGC CGAAAC GCCCCGCGC TTTTTTAATTCAACC TM1040_2927 3097625 - 3097197 - | OsmC-like protein TERM 3148 3097639 - 3097667 + H 89 -12.5 -3.87075 | ATCTGCGACTCCTTT CATCGTGAGCGAT TAT ATCGTGCACGATG TTTATGGCGCGTGAT TM1040_2928 3097733 - 3098164 + | MarR family transcriptional regulator TM1040_2929 3099124 - 3098183 - | hypothetical protein TERM 3149 3098558 - 3098546 - G 70 -3.3 -4.68645 | opp_overlap 3098549 3098556, overlap 3098549 GACGGAAAAGTAAAA CACGA TCG CCGCG GTCTCTTCGCTTTGC TM1040_2930 3099859 - 3099209 - | cation efflux protein TM1040_2931 3099944 - 3100360 + | MerR family transcriptional regulator TM1040_2932 3101275 - 3100370 - | NAD-dependent epimerase/dehydratase TERM 3150 3100491 - 3100507 + g 73 -4.3 -4.65933 | overlap 3100490 3100491 AGCTCGTCCTTGATC CGTGCGT TGC GCACACG TTTGTTTTCACCGTA TERM 3151 3101601 - 3101585 - H 70 -10.8 -3.34344 | CGACTTTTTAACCAA GCGGGC GGTGG GCCCGC GGAGGACGCGATGCC TM1040_2933 3101671 - 3102390 + | hypothetical protein TM1040_2934 3102377 - 3103309 + | periplasmic binding protein TERM 3152 3103707 - 3103752 + G 86 -12.5 -3.87346 | overlap 3103714 3103729 CGGCAGCTGCTTTCC TGATGACGCTCACGCTCTCGC ACCG GCGAGGGCGTGCGCTTGATCC TTTGGTGGTTATCCT TERM 3153 3103714 - 3103745 + G 95 -18 -3.34227 | overlap 3103707 3103729 TGCTTTCCTGATGAC GCTCACGCTCTCGC ACCG GCGAGGGCGTGCGC TTGATCCTTTGGTGG TM1040_2935 3103310 - 3104317 + | transport system permease protein TERM 3154 3105044 - 3105071 + G 78 -13.4 -3.21872 | overlap 3105039 3105039 3105035 CAGCCTCAAGCTGGA GGGGCCGGTTCT TGAC GGAACCGACCCC TTGCGTGTCTTTGAA TM1040_2936 3104307 - 3105140 + | ABC transporter related TM1040_2937 3107272 - 3105098 - | methyl-accepting chemotaxis sensory transducer TM1040_2938 3107839 - 3108678 + | OmpA/MotB TERM 3155 3108746 - 3108696 - f 71 -4.2 -4.52873 | gap 1, opp_overlap 3108700, overlap 3108702 GCTCCATAAAAATAA GACAAATGCGGCTAACAGATAGA TTGGAT TTTATCTGTTAGCCGCACGT-TA AGTACAACCGCGGTA TERM 3156 3108700 - 3108743 + F 74 -11.9 -3.05384 | opp_overlap 3108696 3108702 CATAAAAATAAGACA AATGCGGCTAACAGATAGA TTGGAT TTTATCTGTTAGCCGCACG TTAAGTACAACCGCG TERM 3157 3108741 - 3108702 - f 100 -16.7 -4.48869 | opp_overlap 3108700, overlap 3108696 TAAAAATAAGACAAA TGCGGCTAACAGATAGA TTGGAT TTTATCTGTTAGCCGCA CGTTAAGTACAACCG TM1040_2939 3108809 - 3110077 + | hypothetical protein TERM 3158 3110071 - 3110089 + F 81 -13.2 -3.54424 | opp_overlap 3110071 AACGACCAACATTAA GCGCTGAT AAA ATCAGCGC TTTCCACAGCTAGAA TERM 3159 3110089 - 3110071 - f 79 -13.2 -3.40565 | opp_overlap 3110071 AACGACCAACATTAA GCGCTGAT AAA ATCAGCGC TTTCCACAGCTAGAA flgK 3110129 - 3111577 + | flagellar hook-associated protein FlgK TERM 3160 3112078 - 3112088 + G 76 -5.4 -4.62302 | TGGTGCTCTGACTGA TGTC GAT GACA TTTTTCAGGCTGTTG TM1040_2941 3111581 - 3112588 + | flagellar hook-associated protein FlgL family protein flgI 3112588 - 3113691 + | flagellar basal body P-ring protein TERM 3161 3113744 - 3113720 - T 100 -17.1 -3.72695 | opp_overlap 3113720 AGCCCCCTGACCAAA CACCCCGGGAG ACC CGCCCGGGGTG TTTTTTTGTTAGCCT TERM 3162 3113720 - 3113744 + T 100 -17.1 -5.80364 | opp_overlap 3113720 AGCCCCCTGACCAAA CACCCCGGGAG ACC CGCCCGGGGTG TTTTTTTGTTAGCCT TM1040_2943 3114184 - 3113864 - | hypothetical protein TERM 3163 3114173 - 3114146 - G 100 -18.4 -4.7373 | opp_overlap 3114131, overlap 3114124 GCATGGTATGAAAAA GCCCCGCGCAGC GTAG GCTGGGCGGGGC GATGAAATCATGCTC fliP 3114946 - 3114200 - | flagellar biosynthesis protein FliP TM1040_2945 3115239 - 3114943 - | surface presentation of antigens (SPOA) protein TM1040_2946 3115828 - 3115232 - | ABC transporter, ATP-binding protein, flagellar, putative TERM 3164 3115476 - 3115488 + g 73 -9.1 -3.92178 | ATGGGCTCGTTGATC TGGCC TTT GGCCA TTTCATTGAGGTGGT TERM 3165 3115745 - 3115727 - G 74 -11 -3.53444 | GTAGCCCTTCTCAAA GGAGACGA GCT TCGCCTCC TCCACCAGTTCCTCG fliF 3117543 - 3115828 - | flagellar MS-ring protein TERM 3166 3115862 - 3115880 + g 70 -4.4 -4.45068 | TTTTCTTCCAGCCAG CCGCGAAG AAT CTGCACGG TTTCTTCTTGGCGCT TERM 3167 3117448 - 3117424 - G 84 -10.7 -4.22748 | overlap 3117419 GAGGAAGAAAGTAAA GATCACGGCGA GAG TCGCCCCGATC GCCATCATCCGCTTC TM1040_2948 3117624 - 3118148 + | flagellar basal body-associated protein FliL TERM 3168 3118189 - 3118208 + G 73 -4.2 -4.69053 | gap 1, overlap 3118197 3118204 ATATCCTGCTTGCGG CCGGAGCAC TGG GTGC-CGGG TTTTATTGCCTGGTG TM1040_2949 3118158 - 3118616 + | hypothetical protein TERM 3169 3118662 - 3118652 - g 72 -2.4 -4.80396 | opp_overlap 3118660 CAAAAGATGGAAAAA GCGC GGC GCGG CACTTTGATGCTGTT TM1040_2950 3118616 - 3119233 + | hypothetical protein TM1040_2951 3119308 - 3120177 + | flagellar motor protein MotA TM1040_2952 3120174 - 3122588 + | hypothetical protein TERM 3170 3122620 - 3122653 + F 74 -12.5 -2.77043 | gap 1, opp_overlap 3122620 3122618 3122624, overlap 3122624 TTTCGCGACAGAATA CGAA-TGGCCGCGCTC TCT GAGTTCGGCCATTTCG CTTTGCACTGATAAC TERM 3171 3122653 - 3122620 - f 70 -10.3 -3.31726 | gap 1, opp_overlap 3122620 3122624, overlap 3122618 3122624 TTTCGCGACAGAATA CGAA-TGGCCGCGCTC TCT GAGTTCGGCCATTTCG CTTTGCACTGATAAC TERM 3172 3122648 - 3122624 - f 70 -9.9 -3.44443 | opp_overlap 3122620 3122624, overlap 3122620 3122618 GCGACAGAATACGAA TGGCCGCGCTC TCT GAGTTCGGCCA TTTCGCTTTGCACTG TERM 3173 3122624 - 3122648 + F 83 -12.1 -3.85165 | opp_overlap 3122624 3122620 3122618, overlap 3122620 GCGACAGAATACGAA TGGCCGCGCTC TCT GAGTTCGGCCA TTTCGCTTTGCACTG TERM 3174 3122785 - 3122817 + F 78 -5.7 -4.70879 | gap 1 CGCGGAATTTGTTTG CTGTAG-AACGTGG GACAGG CCATGTTGCTGCAG TTTTTGGCATTTCGG TERM 3175 3122930 - 3122920 - f 70 -3.2 -4.76963 | TCACATAAGAGAAAA TCCG TGC CGAA TCTGTCAGTCAAAGA TERM 3176 3123965 - 3123953 - g 80 -3.3 -5.01732 | overlap 3123954 AATCGCCCGAAAAAA CCAAG GCC CTGGG AGACATCCTCGACCT flhA 3122923 - 3125013 + | flagellar biosynthesis protein FlhA TM1040_2954 3125010 - 3125789 + | flagellar biosynthetic protein FliR TERM 3177 3126506 - 3126496 - g 72 -2.4 -4.82667 | GGATGAGATGAAAAA CTCC GAG GGTG ATCCTCACACAAAAG flhB 3125786 - 3126877 + | flagellar biosynthesis protein FlhB TM1040_2956 3126889 - 3127278 + | hypothetical protein TERM 3178 3127523 - 3127496 - T 87 -9.8 -4.64048 | opp_overlap 3127499, overlap 3127499 GACCACACAAAGAAA GAGCCGCCTCCA ATAC TGGACGCGGTTC TTAAAGTTTGAGGGG TERM 3179 3127499 - 3127520 + T 75 -10.1 -3.70919 | opp_overlap 3127496 3127499 CACACAAAGAAAGAG CCGCCTCCA ATAC TGGACGCGG TTCTTAAAGTTTGAG TM1040_2957 3128064 - 3127555 - | hypothetical protein TERM 3180 3127612 - 3127626 + g 70 -10 -3.44229 | opp_overlap 3127616 AACGTCTTTACCGAG GAAGCG GCG CGCTTC TTCTCGTAGTGAAGT flgH 3128813 - 3128076 - | flagellar basal body L-ring protein flgA 3129229 - 3128813 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 3181 3129088 - 3129104 + g 74 -5.7 -4.56597 | TGGGGCTGCTCAACG CGCCGGG CGA CTCGACG TTTTTGAACACGAGG flgG 3130015 - 3129230 - | flagellar basal body rod protein FlgG flgF 3130741 - 3130025 - | flagellar basal body rod protein FlgF TM1040_2962 3131019 - 3130741 - | export protein FliQ fliE 3131319 - 3131023 - | flagellar hook-basal body protein FliE flgC 3131735 - 3131343 - | flagellar basal body rod protein FlgC flgB 3132141 - 3131752 - | flagellar basal body rod protein FlgB TERM 3182 3131889 - 3131903 + g 72 -11.4 -3.28791 | TGTTGTTGGGATCTA CGGACG ACT CGTCCG TTGTGACGGCCCAAT TERM 3183 3132478 - 3132488 + G 70 -3.2 -4.63218 | overlap 3132464 3132469 3132461 GCGTGCCTCCATCGG GGAT GCG GTCC TTTTGTTCCAGACGC TERM 3184 3132638 - 3132626 - g 70 -10.5 -3.54935 | opp_overlap 3132629 3132630, overlap 3132615 GAAAGCCCGCCCAAA GCCGC TGC GCGGC GCGGTCTTGGTAAAC TERM 3185 3133467 - 3133452 - g 70 -3.2 -4.62872 | opp_overlap 3133449 3133452 ACCAAGCTGTAAAAA TCTGGC CAGA GCTAGA TTCTTTCTTTGGTCG TERM 3186 3133452 - 3133467 + G 71 -5.4 -4.35958 | opp_overlap 3133452, overlap 3133449 ACCAAGCTGTAAAAA TCTGGC CAGA GCTAGA TTCTTTCTTTGGTCG TM1040_2966 3132230 - 3133558 + | ATP synthase FliI/YscN TERM 3187 3133616 - 3133636 + F 93 -10.4 -4.63486 | opp_overlap 3133616 ACGCGCACACAAAAA TGCCGCCT TCAAC GGGCGGCA TTTTCTTGCGAGGAT TERM 3188 3133636 - 3133616 - f 100 -9.7 -4.9725 | opp_overlap 3133616 ACGCGCACACAAAAA TGCCGCC TTCAACG GGCGGCA TTTTCTTGCGAGGAT TM1040_2967 3133720 - 3134007 + | transposase IS3/IS911 TM1040_2968 3134061 - 3134855 + | integrase catalytic subunit TM1040_2969 3134929 - 3135195 + | transposase IS3/IS911 TM1040_2970 3135228 - 3136025 + | integrase catalytic subunit TERM 3189 3136284 - 3136247 - T 80 -14.1 -3.01712 | CGGGGCCTGGGAAGA TGCGCCAAGCGCCCAGA CGGA TCAGGGCGCTTGGGGAA ATGATGGATGTTAGC TM1040_2971 3138247 - 3136295 - | hypothetical protein TERM 3190 3137405 - 3137424 + g 71 -7.8 -4.07568 | TTCAGCTGCATCATC CCCGTTCA CGGT TGCACGGG TTTTAAAGGCGGAAA TERM 3191 3138052 - 3138074 + g 77 -14.8 -2.71483 | opp_overlap 3138045 3138044 GACCAAACGCCTTAA CCGCCACCTG AAG CAGGCGGCGG TCATTAAGCAAGTCT flbT 3138648 - 3138244 - | flagellar biosynthesis repressor FlbT flaF 3139022 - 3138651 - | flagellar biosynthesis regulatory protein FlaF TERM 3192 3139024 - 3139036 + r 77 -2.7 -5.10933 | overlap 3139025 AGAAGGGCATTCACG TGTTA TCC TAACG TTTTATTTTCACTGA TM1040_2974 3139957 - 3139109 - | flagellin-like TERM 3193 3140132 - 3140142 + r 76 -5.4 -4.6902 | AGAGAGTGCTAATGG TGCA ATT TGCA TTTTTAAAATTGTCC TM1040_2975 3140541 - 3140173 - | hypothetical protein TM1040_2976 3140828 - 3140538 - | flagellar protein FlgJ, putative TERM 3194 3141722 - 3141701 - g 70 -4.3 -4.56775 | overlap 3141702 3141703 ATTGCTGCCGAAAAA GGTGCGCAG CCGC CTGCGCAGG CACAGGCTCAGACCG TM1040_2977 3140954 - 3142540 + | hypothetical protein flgD 3142545 - 3143240 + | flagellar basal body rod modification protein TERM 3195 3143345 - 3143384 + G 89 -12.8 -4.03234 | opp_overlap 3143348, overlap 3143347 3143348 3143350 3143381 3143382 ATCAGGATGATATTG AAACAGCCCTGTTTCGCC ATCT GGCGCAGCAGGGCTGGTG TTTGTCTGCCCCCAC TERM 3196 3143347 - 3143382 + G 93 -15.4 -3.61232 | opp_overlap 3143348, overlap 3143345 3143348 3143350 3143381 CAGGATGATATTGAA ACAGCCCTGTTTCGCC ATCT GGCGCAGCAGGGCTGG TGTTTGTCTGCCCCC TERM 3197 3143348 - 3143381 + G 88 -18.9 -2.76418 | opp_overlap 3143348, overlap 3143347 3143345 3143350 AGGATGATATTGAAA CAGCCCTGTTTCGCC ATCT GGCGCAGCAGGGCTG GTGTTTGTCTGCCCC TERM 3198 3143381 - 3143348 - g 100 -16.7 -3.72968 | opp_overlap 3143348 3143347 3143345 3143350 AGGATGATATTGAAA CAGCCCTGTTTCGCC ATCT GGCGCAGCAGGGCTG GTGTTTGTCTGCCCC TERM 3199 3143350 - 3143379 + G 81 -15.7 -2.92495 | opp_overlap 3143348, overlap 3143348 3143347 3143345 GATGATATTGAAACA GCCCTGTTTCGCC ATCT GGCGCAGCAGGGC TGGTGTTTGTCTGCC TERM 3200 3143381 - 3143428 + G 74 -11.2 -3.53012 | gap 1, overlap 3143347 3143345 3143382 TGGCGCAGCAGGGCT GGTGTTTG-TCTGCCCCCACGCC ACT GGCGGGGGGGCGTAGCAATCACG TTTGGCGCGCGGGGG TERM 3201 3143382 - 3143427 + G 77 -14.7 -2.71712 | gap 1, overlap 3143345 3143381 GGCGCAGCAGGGCTG GTGTTTG-TCTGCCCCCACGCC ACT GGCGGGGGGGCGTAGCAATCAC GTTTGGCGCGCGGGG TERM 3202 3143524 - 3143555 + G 80 -3.6 -5.02074 | gap 1, overlap 3143534 GAACGAGCGATGTTG CG-GGCGCTGAGC GGCACGG GCATGGCGCCGCG TTTTTTGGCGCATGG TM1040_2979 3143290 - 3144138 + | aminoglycoside phosphotransferase TM1040_2980 3145442 - 3144135 - | FAD dependent oxidoreductase TM1040_2981 3146257 - 3145439 - | binding-protein-dependent transport systems inner membrane component TERM 3203 3146082 - 3146096 + g 71 -6.4 -4.21275 | overlap 3146078 3146072 3146083 GTCACCCATGCTGCT TGAAGC ATA GCTTCG TTTTGCATCAGTTCG TM1040_2982 3147135 - 3146254 - | binding-protein-dependent transport systems inner membrane component TERM 3204 3147101 - 3147085 - G 78 -4.3 -4.74801 | overlap 3147088 3147096 GAACGGCACCAAAAA CAGGGCC AAA AGCCATG CATAGGGGACGGCGA TERM 3205 3147156 - 3147128 - G 83 -2.4 -5.1861 | opp_overlap 3147155, overlap 3147150 GCGATCAGGAAAAAA CGGCGCATTATT CCCCC AACAAGACACCG CCGGTGGCTGTCCAG TERM 3206 3147188 - 3147150 - R 91 -15.5 -3.62046 | gap 2, opp_overlap 3147155 3147157, overlap 3147128 TTATTCCCCCAACAA GACACCGCCGGTGGCTGTC CAG GACAGCCA--GACGGTGTC TTCCCATGTGTAGGC TERM 3207 3147155 - 3147186 + r 71 -11.6 -3.08934 | gap 1, opp_overlap 3147128 3147150, overlap 3147157 CCCCCAACAAGACAC CGCCG-GTGGCTGTC CAG GACAGCCAGACGGTG TCTTCCCATGTGTAG TM1040_2983 3148331 - 3147135 - | spermidine/putrescine ABC transporter ATP-binding subunit TERM 3208 3148316 - 3148345 + g 100 -19.3 -4.18197 | overlap 3148290 3148318 CTTGTGTAGGTGAGG TGGGCGGGGCGTG CATT CACGCCCCGCCTG TTTTAACTGCGGGAT TERM 3209 3148318 - 3148343 + g 100 -21.9 -3.69216 | overlap 3148290 3148316 TGTGTAGGTGAGGTG GGCGGGGCGTG CATT CACGCCCCGCC TGTTTTAACTGCGGG TM1040_2984 3149453 - 3148365 - | extracellular solute-binding protein TERM 3210 3149423 - 3149440 + g 78 -6.9 -4.70319 | CGCTGAGTGCGATGG CGGACAC GATG GTGGCCG TTTTGGTTTTCATGA TM1040_2985 3149540 - 3150286 + | GntR family transcriptional regulator TM1040_2986 3150350 - 3151747 + | putative aminotransferase TERM 3211 3151796 - 3151779 - f 77 -8.3 -4.30978 | opp_overlap 3151780, overlap 3151780 TCGAATTGATCAAAA GGGGCCG GAAA CGGCCCT TTTTTTAAGCATTTC TERM 3212 3151795 - 3151780 - f 74 -11.8 -3.18105 | opp_overlap 3151780, overlap 3151779 CGAATTGATCAAAAG GGGCCG GAAA CGGCCC TTTTTTTAAGCATTT TERM 3213 3151780 - 3151795 + F 100 -11.8 -5.4477 | opp_overlap 3151780 3151779 CGAATTGATCAAAAG GGGCCG GAAA CGGCCC TTTTTTTAAGCATTT TERM 3214 3152960 - 3152945 - g 71 -6.1 -4.33203 | overlap 3152942 GAATACAACAAAGAA CGCCT GCAGGA AGGCG CACATACACTCAAGG TM1040_2987 3152051 - 3153151 + | spermidine/putrescine ABC transporter ATP-binding subunit TM1040_2988 3153256 - 3154362 + | polyamine ABC trasnporter, periplasmic polyamine-binding protein TERM 3215 3155223 - 3155194 - g 73 -10.7 -3.57462 | gap 1 CATTTGAGGGTGAAA CTGCCGC-GCGGCT TGC AGCAGCAGCAGCAG CCATCCAGTCCCCGG TM1040_2989 3154473 - 3156098 + | binding-protein-dependent transport systems inner membrane component TM1040_2990 3156106 - 3157281 + | binding-protein-dependent transport systems inner membrane component TERM 3216 3157325 - 3157292 - T 100 -24.1 -3.65314 | opp_overlap 3157292 3157295 3157299, overlap 3157295 3157299 GCTAACCTGCAAGAA CAACAAAGCCCCGCT CTTC AGCGGGGCTTTGTTG TGATGTTCGGTGAGT TERM 3217 3157292 - 3157325 + T 100 -24.1 -2.76171 | opp_overlap 3157292 3157295 3157299, overlap 3157295 3157299 GCTAACCTGCAAGAA CAACAAAGCCCCGCT CTTC AGCGGGGCTTTGTTG TGATGTTCGGTGAGT TERM 3218 3157322 - 3157295 - T 100 -20 -3.95725 | opp_overlap 3157292 3157295 3157299, overlap 3157292 3157299 AACCTGCAAGAACAA CAAAGCCCCGCT CTTC AGCGGGGCTTTG TTGTGATGTTCGGTG TERM 3219 3157295 - 3157322 + T 100 -20 -3.52787 | opp_overlap 3157295 3157292 3157299, overlap 3157292 3157299 AACCTGCAAGAACAA CAAAGCCCCGCT CTTC AGCGGGGCTTTG TTGTGATGTTCGGTG TERM 3220 3157318 - 3157299 - T 100 -15 -4.57882 | opp_overlap 3157295 3157292 3157299, overlap 3157295 3157292 TGCAAGAACAACAAA GCCCCGCT CTTC AGCGGGGC TTTGTTGTGATGTTC TERM 3221 3157299 - 3157318 + T 100 -15 -4.39277 | opp_overlap 3157299 3157295 3157292, overlap 3157295 3157292 TGCAAGAACAACAAA GCCCCGCT CTTC AGCGGGGC TTTGTTGTGATGTTC TM1040_2991 3158713 - 3157346 - | lytic murein transglycosylase TM1040_2992 3159579 - 3158821 - | helix-turn-helix, type 11 TERM 3222 3159487 - 3159503 + g 75 -2.9 -4.96762 | overlap 3159488 CAGGGTTTGCATCAA TCGAAAG AGC CGTTCGG TTTTTGTCATCTGTC TERM 3223 3159673 - 3159714 + G 70 -3.7 -4.72272 | gap 1, overlap 3159676 GCACCAAGGCGGCGC TGTTGCTGCAGATGTCAGGT GCG ACCTGGCAACGGCAG-GATG TTTTTGATCCGGCGG TERM 3224 3159676 - 3159712 + G 78 -10.1 -3.98256 | overlap 3159673 CCAAGGCGGCGCTGT TGCTGCAGATGTCAGGT GCG ACCTGGCAACGGCAGGA TGTTTTTGATCCGGC TM1040_2993 3159600 - 3160313 + | hypothetical protein TM1040_2994 3162747 - 3160462 - | RNAse R TERM 3225 3160554 - 3160593 + g 95 -14.8 -4.10657 | TGGTGCGTCCCGCCG GGCTGCGGCGGCGGCCGC CTTT GCGGCTTCCACCACGGCC TTTTGGCAGGTCTGC TERM 3226 3161955 - 3161932 - G 73 -10.4 -3.57263 | gap 1 ATCGGCATGGGCAAA GCACGC-ATCA TCA TGATCGCGTGC ATCGGCTGGGTCGAT TM1040_2995 3163285 - 3162863 - | GCN5-related N-acetyltransferase TM1040_2996 3164427 - 3163282 - | succinyl-diaminopimelate desuccinylase TERM 3227 3165821 - 3165838 + G 74 -4.1 -4.82901 | TGCCAGTTGTGGCGG GGCTC GGGGTCGA GAGCC TTTTTCTGGGGCGCA TM1040_2997 3164896 - 3165993 + | hypothetical protein TERM 3228 3166648 - 3166661 + G 77 -3.7 -4.90906 | overlap 3166640 GCGGGTGCCGCGCAG CGCGC TTGG GCGGG TTTTTGGTGTTCTGC TM1040_2998 3166064 - 3167128 + | extracellular solute-binding protein TM1040_2999 3167545 - 3167180 - | hypothetical protein TERM 3229 3167755 - 3167766 + G 76 -5.8 -4.59773 | opp_overlap 3167737 3167755, overlap 3167739 CCTCTGCCGAGGACA TGGC GGAA GCCA TTTTTGGCAATGGCA TM1040_3000 3167703 - 3169283 + | hypothetical protein TM1040_3001 3169930 - 3169277 - | GntR family transcriptional regulator TERM 3230 3170182 - 3170195 + G 74 -3.7 -4.84642 | GCCTCGCAGAGATTG CGCGC GAGG GCCCG TTTTCTTCCTTTGCG TM1040_3002 3170058 - 3170588 + | hypothetical protein TM1040_3003 3171927 - 3170563 - | N-formimino-L-glutamate deiminase TM1040_3004 3172003 - 3173220 + | imidazolonepropionase TM1040_3005 3173217 - 3174740 + | histidine ammonia-lyase TM1040_3006 3174737 - 3175513 + | N-formylglutamate amidohydrolase TERM 3231 3176047 - 3176065 + G 100 -10.2 -4.7871 | overlap 3176048 GGGGGGATGGGGGGG GCGCAGCC TTT GGCTGCGG TTTTTGCTGGTGCTT TERM 3232 3176048 - 3176064 + G 86 -13.7 -3.46141 | overlap 3176047 GGGGGATGGGGGGGG CGCAGCC TTT GGCTGCG GTTTTTGCTGGTGCT TERM 3233 3176208 - 3176224 + G 71 -8 -4.09685 | GACCAAGGCGGGCGA GGCCAA ATCCG TTGGCC TTTTGGGCAATGCGG TM1040_3007 3175510 - 3177198 + | urocanate hydratase TERM 3234 3177206 - 3177225 + T 72 -12.8 -2.52464 | CGGAATGACCGGATG GGCGGGGC GCAT GTCCCGCC TCCCTTGGGGGACCC TERM 3235 3177228 - 3177244 + T 70 -12.3 -2.61681 | overlap 3177227 CGCATGTCCCGCCTC CCTTGGG GGA CCCAAGG CTTCTGCGGTTACAG TM1040_3008 3177643 - 3177254 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3236 3177775 - 3177756 - R 100 -11.4 -6.02919 | opp_overlap 3177756 TGAGAAATAAAAAAA CAGGCAGC CGAA GCCGCCTG TTGTCACATTTATGT dapD 3178643 - 3177816 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TM1040_3010 3179393 - 3178764 - | GntR family transcriptional regulator TM1040_3011 3180365 - 3179412 - | threonine dehydratase TERM 3237 3180139 - 3180112 - G 73 -9.8 -3.64703 | gap 1, overlap 3180126 GCGTTGTGACCCAAA GCGCGGGCGGCAA AGG CCACCG-CCGCGC CATGATTGCCACCGG TM1040_3012 3180522 - 3181370 + | hypothetical protein TERM 3238 3181453 - 3181413 - T 77 -11 -3.55444 | gap 2 TCGGCATGCTTTAAA CGG--TAGCGCGTCGGGCCC CTT GGGCCCGGCGCGCGGGTCCG CCCGACAGGACGGAG TM1040_3013 3181769 - 3181566 - | hypothetical protein TERM 3239 3181907 - 3181884 - R 87 -12.4 -4.11346 | opp_overlap 3181883 ATAGGGAAAGAATAA GGCGCCACGA TTTC TCGCAGCGCC CTTAGATCGGTTCTG TM1040_3014 3183130 - 3181937 - | hypothetical protein TERM 3240 3182106 - 3182122 + g 73 -8.7 -3.85698 | GCAAACGCCCGGATG CGGTTGT TGG ACGACCG TTTATAGGGCGCCCC TERM 3241 3183325 - 3183304 - R 100 -12.3 -5.07652 | opp_overlap 3183302 CCTCGCAAAAGAAAA CGGCGAAGC CGGG ACTTCGCCG CATCATTCAAAATCG TM1040_3015 3183902 - 3183354 - | hypothetical protein TERM 3242 3184040 - 3184066 + H 75 -5.8 -4.67354 | overlap 3184030 3184029 3184041 3184042 AGTTTGGCAGGTTTT TGCCGTCTTTTC CTT GAAAAGCCGGGG TTTTGTATGTCTGTT TM1040_3016 3184117 - 3185124 + | L-asparaginase II TM1040_3017 3185458 - 3185138 - | hypothetical protein TM1040_3018 3186303 - 3185545 - | hypothetical protein TM1040_3019 3187187 - 3186312 - | phosphoserine phosphatase TERM 3243 3187446 - 3187464 + G 89 -4.5 -5.18726 | opp_overlap 3187439 TTGCACAACCGGCAT CGCGG CCGGCCAAT CCGCG TTTTTCTTCTGGCCC TM1040_3020 3187424 - 3188569 + | phosphoserine aminotransferase TERM 3244 3188953 - 3188929 - g 74 -5.6 -4.56775 | opp_overlap 3188933 AGCCGCGTCGAAAAA GGGTGTGATC GTCAT GAACACTCCC TTCGGCAACATGATC TM1040_3021 3188663 - 3190258 + | D-3-phosphoglycerate dehydrogenase TERM 3245 3190285 - 3190308 + F 100 -14.6 -5.07486 | opp_overlap 3190283 AGTTTGAAAACACGG CGGGCTCATC ATTG GATGGGCCCG TTTTTGTTCCAACTC TERM 3246 3190833 - 3190812 - g 89 -17.3 -3.14132 | TCCGTTGTGCATGAA GCGGCACGG GCAG CCGTGCCGC AACAGCATCTGAGCT TM1040_3022 3190437 - 3191171 + | bis(5'nucleosyl)-tetraphosphatase, ApaH TERM 3247 3191332 - 3191365 + T 100 -14.6 -4.12188 | gap 1, overlap 3191334 CACGTTGTCCTTACT GCGGCAGGCG-CCCT CGCAA AGGGTCGCCTGCCTC TTTTCAAGGTGCTCA TERM 3248 3191334 - 3191363 + T 91 -15.8 -3.6581 | gap 1, overlap 3191332 CGTTGTCCTTACTGC GGCAGGCG-CCCT CGCAA AGGGTCGCCTGCC TCTTTTCAAGGTGCT tdh 3192424 - 3191378 - | L-threonine 3-dehydrogenase TERM 3249 3192367 - 3192391 + g 76 -9.4 -4.05322 | gap 1, opp_overlap 3192373 3192374, overlap 3192354 3192356 CTGGGGCCTGGACCA TCCAAAGCCCC TCTT GGGG-TTTGGA TTTCTCTAGGGCTTT TM1040_3024 3193610 - 3192426 - | 2-amino-3-ketobutyrate coenzyme A ligase TERM 3250 3193707 - 3193694 - R 86 -3.8 -5.40072 | opp_overlap 3193684 3193694 TTTTGCGGAAAAAAA TCCG TGATTG CGGA TTTGCCTACTTCTAA TM1040_3025 3194341 - 3193775 - | XRE family transcriptional regulator TM1040_3026 3194450 - 3195625 + | beta-ketothiolase TERM 3251 3195650 - 3195662 + T 74 -10.5 -3.57144 | opp_overlap 3195644 TCGAGCGAACGTGGA GGGGC TTT GCCCC TTTGCGCGTCCGCGC TERM 3252 3195701 - 3195737 + T 81 -14 -3.09878 | opp_overlap 3195706 3195709, overlap 3195706 CAAGATATTTTCAGT TAGAAGAAGGTACAGA CCCGT TCTGTGCCTTCTTTTA TGTTAGGTGGGTAAA TERM 3253 3195706 - 3195732 + T 100 -11.7 -4.68724 | opp_overlap 3195706 3195709, overlap 3195701 TATTTTCAGTTAGAA GAAGGTACAGA CCCGT TCTGTGCCTTC TTTTATGTTAGGTGG TM1040_3027 3197261 - 3195735 - | 2-octaprenylphenol hydroxylase TERM 3254 3195779 - 3195815 + g 81 -8.5 -4.65933 | overlap 3195777 CCAGAATCCCAAGGG CGGCACCTGCCGAAGCG GCG CGCTTCCACGGCCGCCG TTTGTTTTGGGGCTC TM1040_3028 3198017 - 3197265 - | demethylmenaquinone methyltransferase / 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase TM1040_3029 3198104 - 3198955 + | formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase TM1040_3030 3199021 - 3199797 + | short chain enoyl-CoA hydratase TERM 3255 3199900 - 3199915 + F 100 -10.4 -4.93696 | opp_overlap 3199900 CAGCCTTTCAGAAAA CGGACC TTCG GGTCCG TTTTTCATGTTTGGA TERM 3256 3199915 - 3199900 - f 88 -10.4 -4.3739 | opp_overlap 3199900 CAGCCTTTCAGAAAA CGGACC TTCG GGTCCG TTTTTCATGTTTGGA TERM 3257 3200191 - 3200169 - g 70 -4.8 -4.49389 | overlap 3200171 3200188 ACGTCAGAACGAAAA GCGCTTTGCC ATC AACAAAGCTC GTCGTTCGCGCATCC rpsT 3200122 - 3200385 + | 30S ribosomal protein S20