TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.664031 %AT, 2256429 nt, 11770 terms. Intergenic: 0.702824 %AT, H2T: 446406 nt, 3159 terms; T2T: 138159 nt, 2864 terms; H2H: 120084 nt, 1664 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|161510924|ref|NC_010063.1| Staphylococcus aureus subsp. aureus USA300_TCH1516 plasmid pUSA300HOUMR, complete sequence (length 27041) TERM 1 661 - 639 - g 83 -10.6 -3.31263 | overlap 643 652 ACCTTACGGCGAGAA GGAAGTTCGA AAA TCGAACGTCC AGAAGTTCGAAAATC TERM 2 657 - 643 - g 75 -8.6 -3.44622 | overlap 639 652 TACGGCGAGAAGGAA GTTCGA AAA TCGAAC GTCCAGAAGTTCGAA TERM 3 694 - 652 - g 100 -15 -4.15508 | overlap 643 639 675 AAGGAAGTTCGAAAA TCGAACGTCCAGAAGTTCGA AAA TCGAACGTCCAGAAGTTCGA AAATCGAACGTCCAG TERM 4 717 - 675 - g 100 -15 -4.1585 | overlap 652 712 CCAGAAGTTCGAAAA TCGAACGTCCAGAAGTTCGA AAA TCGAACGTCCAGAAGTTCGA AAATCGAACACTAAT TERM 5 726 - 712 - g 73 -8.6 -3.3344 | overlap 675 ATCGAACGTCCAGAA GTTCGA AAA TCGAAC ACTAATGATACTGAC repA 232 - 1215 + | replication protein A TERM 6 1517 - 1538 + F 100 -8.1 -6.04419 | opp_overlap 1517 AAAATTATTATTTAA GACATTAGT GATA ACTGATGTC TTTTTTTATTGTTTT TERM 7 1593 - 1625 + F 100 -10.8 -4.11404 | gap 1, overlap 1595 1620 TTTGTGACAAATGCT GTATGTAGTGTCACA AAAG TGTGACACTACA-GC TTTGTATGATATCAC TERM 8 1595 - 1624 + F 100 -12.3 -3.0636 | overlap 1593 1620 TGTGACAAATGCTGT ATGTAGTGTCACA AAAG TGTGACACTACAG CTTTGTATGATATCA TERM 9 1669 - 1683 + F 78 -10 -3.1458 | overlap 1668 1662 AAAACCCTTGGAATG TCTGGC CTT GCCAGA TCTATCATTTTTGAA USA300HOU_pUSA300HOUMR0003 2071 - 2220 + | hypothetical protein USA300HOU_pUSA300HOUMR0004 3080 - 2388 - | hypothetical protein USA300HOU_pUSA300HOUMR0005 3190 - 3384 + | hypothetical protein TERM 10 3805 - 3771 - f 90 -8 -5.27923 | opp_overlap 3776, overlap 3776 TAAGGGCATAAAAAA TAAAAGCTACCCCA GATAAAG TGAGGTAGCTTTTT CTTTCATACGGTCTA TERM 11 3776 - 3800 + F 81 -5.7 -5.33405 | opp_overlap 3771 3776 GCATAAAAAATAAAA GCTACCCCA GATAAAG TGAGGTAGC TTTTTCTTTCATACG TERM 12 3800 - 3776 - f 95 -7.9 -5.49579 | opp_overlap 3776, overlap 3771 GCATAAAAAATAAAA GCTACCCCA GATAAAG TGAGGTAGC TTTTTCTTTCATACG TERM 13 3998 - 3985 - g 95 -6.7 -5.95539 | opp_overlap 3985 TTTGAAATAAAAAAA TCGAC GAAG GTCGA TTACGTTTTTGCACA USA300HOU_pUSA300HOUMR0006 3868 - 4035 + | hypothetical protein TERM 14 4490 - 4469 - f 74 -8.9 -3.29959 | opp_overlap 4467 4462, overlap 4467 ATATAAGTTATAATA CATTCAAAA ATAT TTTTGAATG AGGTGTATTATGATT TERM 15 4555 - 4574 + G 71 -3 -5.14563 | CTACAGCAGTTGATT TATTAGTA ATTT TATTAATA TTTTTTGCTAGAGCA TERM 16 4864 - 4876 + G 70 -4.1 -4.69214 | TAGCAAGTTGTGGCG CCGAT AAT ATTGG TTTATTTGTTCCGTA cadR 4500 - 5117 + | cadmium binding protein cadX 5136 - 5483 + | cadmium efflux regulator TERM 17 5795 - 5768 - f 100 -15 -5.1101 | opp_overlap 5760 5768 CCAGCATCGAAAAAA TCCCCACACTAC TGCA ATAGTGTGGGGA TTGGTGCATTAATTG TERM 18 5768 - 5795 + F 100 -14.3 -3.23598 | opp_overlap 5768, overlap 5760 CCAGCATCGAAAAAA TCCCCACACTA CTGCAA TAGTGTGGGGA TTGGTGCATTAATTG TERM 19 6934 - 6916 - f 88 -9 -4.3739 | TATTTTCCTACAAAA CTTATCAT GAT ATGATAAG CGAGTCAATACTAAT USA300HOU_pUSA300HOUMR0010 6971 - 7390 + | MarR family transcriptional regulator TERM 20 7389 - 7375 - T 71 -5.8 -4.37506 | opp_overlap 7375 7374 ATTACTAAAGATAAA TAAAAC TAC GTTTTA ATTTTTACGTTATAA TERM 21 7694 - 7667 - T 85 -5.7 -5.43621 | gap 1, opp_overlap 7667 ATAAATGAGAAAAAA GCAACGCA-CTT TAAAT AAGATACGTTGC TTTTTCGATTGATGA blaZ 8761 - 7916 - | beta-lactamase blaR 8868 - 10625 + | beta-lactamase regulator BlaR blaI 10615 - 10995 + | beta-lactamase regulator BlaI TERM 22 11091 - 11130 + F 100 -12.4 -5.38047 | opp_overlap 11089 11091 11094 11096, overlap 11094 ATATATTATTAAAGA TGAGAGTGTCCAGAAAAT AACC ATTTTCTGTACACTCTTG TTTTTTGTCTAAATA TERM 23 11130 - 11091 - f 71 -8 -3.49884 | opp_overlap 11091 11094, overlap 11089 11094 11096 ATATATTATTAAAGA TGAGAGTGTCCAGAAAAT AACC ATTTTCTGTACACTCTTG TTTTTTGTCTAAATA TERM 24 11094 - 11127 + F 100 -14.1 -4.77122 | opp_overlap 11091 11089 11094 11096, overlap 11091 TATTATTAAAGATGA GAGTGTCCAGAAAAT AACC ATTTTCTGTACACTC TTGTTTTTTGTCTAA TERM 25 11127 - 11094 - f 100 -14.1 -2.88215 | opp_overlap 11094 11091, overlap 11091 11089 11096 TATTATTAAAGATGA GAGTGTCCAGAAAAT AACC ATTTTCTGTACACTC TTGTTTTTTGTCTAA TERM 26 11125 - 11096 - f 83 -10.9 -2.98479 | opp_overlap 11094 11091, overlap 11094 11091 11089 TTATTAAAGATGAGA GTGTCCAGAAAAT AACC ATTTTCTGTACAC TCTTGTTTTTTGTCT USA300HOU_pUSA300HOUMR0014 11259 - 11837 + | recombinase TERM 27 11956 - 11981 + T 70 -5.6 -4.30576 | opp_overlap 11956 TGACAGCGTCTAAAA TCTCATAATA TTTTCC TGTTATGAGA TTTTAATAATAACAC TERM 28 12023 - 12006 - T 95 -7.7 -5.64304 | opp_overlap 12006 TAACACAAGAAAAAA GCGTACA AATT CGTACGC TTTTTTAATATAATA TERM 29 12006 - 12023 + T 84 -7 -5.23316 | opp_overlap 12006 TAACACAAGAAAAAA GCGTAC AAATTC GTACGC TTTTTTAATATAATA USA300HOU_pUSA300HOUMR0015 12245 - 12060 - | hypothetical protein TERM 30 12179 - 12163 - G 71 -5.3 -4.46267 | ATAACCGAACTAAAA TTATATT TGA AATATAA AAGTGCTAATGAAGA TERM 31 13138 - 13115 - g 82 -7.4 -4.58943 | opp_overlap 13114 13115 TCTATATAAAAAGAA CCGCAGGTCT CTTC AGATCTACGG ATTTTCGCCATGCCA USA300HOU_pUSA300HOUMR0016 12507 - 13181 + | IS257 transposase TERM 32 13731 - 13693 - T 78 -10.5 -2.60244 | gap 2, overlap 13689 GCTGTAATCAATGCA CCCACTTCCGCCGCTGTAA ACA TTAC--CGGCAGAAGTAGG AAGCCCTCTACAAGA TERM 33 14190 - 14141 - T 100 -16.3 -4.40358 | gap 1, overlap 14143 14189 ATGTACTTCAGAAAA GA-TTAGATGTCTAAAAAGCTT GTAGTTA AAGCTTTTTAGACATCTAAATC TAGGTACTAAAACAA TERM 34 14187 - 14143 - T 100 -19.1 -3.80877 | overlap 14141 GTACTTCAGAAAAGA TTAGATGTCTAAAAAGCTT GTAGTTA AAGCTTTTTAGACATCTAA ATCTAGGTACTAAAA USA300HOU_pUSA300HOUMR0018 14991 - 14197 - | 3',5' aminoglycoside phosphotransferase TERM 35 14391 - 14407 + g 70 -8.1 -3.32022 | AGCCACTTACTTTGC CATCTTT CAC AAAGATG TTGCTGTCTCCCAGG USA300HOU_pUSA300HOUMR0019 15614 - 15084 - | strepthothricin acetyltransferase USA300HOU_pUSA300HOUMR0021 17061 - 16387 - | IS431 mec transposase TERM 36 16430 - 16453 + g 82 -7.4 -4.58943 | opp_overlap 16429 16430 TGGCATGGCGAAAAT CCGTAGATCT GAAG AGACCTGCGG TTCTTTTTATATAGA TERM 37 17016 - 17002 - G 76 -10 -2.90763 | TGCATATCTTAGATA GTAGCC AAC GGCTAC AGTGATAACATCCTT USA300HOU_pUSA300HOUMR0023 18045 - 17308 - | bacitracin ABC ATP binding cassette transporter, membrane protein USA300HOU_pUSA300HOUMR0024 18958 - 18038 - | bacitracin ABC ATP binding cassette transporter, ABC protein USA300HOU_pUSA300HOUMR0027 21070 - 20396 - | IS431mec transposase TERM 38 20463 - 20438 - G 81 -8.3 -4.11216 | opp_overlap 20436 20439, overlap 20439 GTGGCATGGGGAAAA TCCGTAGATCT GAAG AGACCTACGGT TCTTTTTATATAGAG TERM 39 20439 - 20462 + g 100 -9.6 -4.58943 | opp_overlap 20439 20438, overlap 20436 TGGCATGGGGAAAAT CCGTAGATCT GAAG AGACCTACGG TTCTTTTTATATAGA TERM 40 20462 - 20439 - G 85 -11.8 -3.06515 | opp_overlap 20436 20439, overlap 20438 TGGCATGGGGAAAAT CCGTAGATCT GAAG AGACCTACGG TTCTTTTTATATAGA TERM 41 21025 - 21011 - G 76 -10 -2.90763 | TGCATATCTTAGATA GTAGCC AAC GGCTAC AGTGATAACATCCTT TERM 42 21256 - 21244 - H 72 -4.9 -4.95211 | opp_overlap 21244, overlap 21236 AAAAAACCAACAAAA TGTTA TAT TAACA TTACTATTTTATCGA TERM 43 21377 - 21388 + H 78 -4.4 -5.37345 | opp_overlap 21377, overlap 21369 21370 TACACACTCATAGGA TGAC TTAT GTCA TTTTTTATCCTTCGA TERM 44 21476 - 21498 + H 100 -9.9 -5.47218 | opp_overlap 21479 AAAGTGTAATGTGAA TGAGACGGG AGTAG CCTGTCTCA TTTTTTTGCGTACAC TERM 45 21722 - 21712 - g 87 -6.8 -5.42198 | GCTCAAAAAACAAAA CCAG AAT CTGG AACAGTTGAAACGGT USA300HOU_pUSA300HOUMR0028 21544 - 23010 + | macrolide transporter USA300HOU_pUSA300HOUMR0029 23109 - 24008 + | macrolide 2'-phosphotransferase USA300HOU_pUSA300HOUMR0030 24494 - 25102 + | Sin recombinase TERM 46 25304 - 25342 + F 73 -8.5 -3.45776 | gap 1, opp_overlap 25301 25300 25298, overlap 25306 TATCAAAAATATTTA CA-CTCATAAATGTCAAA TACT TTTTACATTTATGAGGTG TTATAATGAATTTAA TERM 47 25306 - 25339 + F 85 -11.3 -2.57014 | opp_overlap 25301 25300 25298, overlap 25304 TCAAAAATATTTACA CTCATAAATGTCAAA TACT TTTTACATTTATGAG GTGTTATAATGAATT USA300HOU_pUSA300HOUMR0031 25348 - 25680 + | hypothetical protein USA300HOU_pUSA300HOUMR0032 25692 - 25877 + | transcriptional regulator TERM 48 25898 - 25919 + T 100 -14.5 -5.01497 | opp_overlap 25898 CATTTATCACAAAAA GAGAGTGCG AATT CGCACTCTC TTTTTGTGTAGTAGT TERM 49 25919 - 25898 - T 100 -14.5 -4.9218 | opp_overlap 25898 CATTTATCACAAAAA GAGAGTGCG AATT CGCACTCTC TTTTTGTGTAGTAGT TERM 50 26091 - 26063 - T 85 -8.3 -4.57353 | opp_overlap 26084 TCTCACTATATAAAA GACACTAAAATTT TAT AACTTTTAGTGCC TAATCAATTATTTTA USA300HOU_pUSA300HOUMR0033 26847 - 26104 - | partitioning protein TERM 51 26690 - 26708 + g 76 -2.5 -5.4251 | TATTTCTTTTTATTT TCATTTA CTCTT TGAATGA TTTTTTCTATATCGG SEQUENCE gi|161508266|ref|NC_010079.1| Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome (length 2872915) dnaA 544 - 1905 + | chromosomal replication initiation protein TERM 1 1950 - 1961 + F 71 -3 -5.24449 | opp_overlap 1950 ATATAACAGCACTAA TGAT AACA ATCA TTTTTTACATTTCTA TERM 2 2460 - 2450 - g 84 -4 -5.69473 | GATATTATAAAAAAA TTAC CTG GTAA AGATGTTAAATTATC dnaN 2183 - 3316 + | DNA polymerase III subunit beta TERM 3 3372 - 3324 - f 80 -6.3 -4.91852 | opp_overlap 3330 3334 3364, overlap 3330 CTTACTAAAAATAAA TATAAATAAAGGATGACGT GATTAATTAAA ACGTCATCCTTTATTTTTT GGCAAAAATAATTCT TERM 4 3366 - 3330 - f 100 -9.7 -4.56642 | opp_overlap 3330 3334 3364, overlap 3324 AAAAATAAATATAAA TAAAGGATGACGT GATTAATTAAA ACGTCATCCTTTA TTTTTTGGCAAAAAT TERM 5 3330 - 3366 + F 100 -9.7 -5.00884 | opp_overlap 3324 3330, overlap 3334 3364 AAAAATAAATATAAA TAAAGGATGACGT GATTAATTAAA ACGTCATCCTTTA TTTTTTGGCAAAAAT TERM 6 3334 - 3362 + F 81 -6.1 -5.04249 | opp_overlap 3330 3324, overlap 3330 ATAAATATAAATAAA GGATGACGT GATTAATTAAA ACGTCATCC TTTATTTTTTGGCAA USA300HOU_0003 3697 - 3942 + | hypothetical protein TERM 7 4498 - 4484 - g 79 -8.6 -3.84246 | GTTGGAAGTATTAAA TCAGCA GTT TGCTGA ATATGCAATGAAAGT recF 3939 - 5051 + | recombination protein F gyrB 5061 - 6995 + | DNA topoisomerase (ATP-hydrolyzing) subunit B gyrA 7032 - 9695 + | DNA topoisomerase (ATP-hydrolyzing) subunit A TERM 8 9732 - 9703 - T 100 -12.3 -5.70522 | opp_overlap 9703 AAGAATAATAAAAAA TAAGACTTCCCTA TATG TAGGGGAGTCTTA TTTTTATGCTAGAAA TERM 9 9703 - 9732 + T 100 -14.5 -4.91109 | opp_overlap 9703 AAGAATAATAAAAAA TAAGACTTCCCTA TATG TAGGGGAGTCTTA TTTTTATGCTAGAAA USA300HOU_0007 10612 - 9782 - | hypothetical protein TERM 10 10799 - 10813 + H 71 -8.6 -2.83641 | TTAATATCCTTTAAC GCACTA CAA TAGTGC TCTGATAATAGGTTA hutH 10920 - 12434 + | histidine ammonia-lyase TERM 11 12623 - 12634 + F 70 -5.8 -4.25658 | opp_overlap 12622 12623 ATTTAAAAGAACAAT CGGT GATA ACCG TTATTTTAGTGAAGT TERM 12 12709 - 12735 + F 100 -17.4 -6.14618 | opp_overlap 12714 GGGTGGCAACGCGTA GACCACGTCCCT TGT AGGGATGTGGTC TTTTTTTATTTTCTA serS 12813 - 14099 + | seryl-tRNA synthetase TERM 13 14183 - 14204 + F 100 -8.7 -5.69473 | opp_overlap 14183 14185 ATAATATTTTAAAAA GTGGTGACG AAGC TGTCGCCAC TTTTTTTGTGCTGTA TERM 14 14204 - 14183 - f 73 -5.8 -4.67556 | opp_overlap 14183, overlap 14185 ATAATATTTTAAAAA GTGGTGAC GAAGCT GTCGCCAC TTTTTTTGTGCTGTA USA300HOU_0010 14749 - 15444 + | hypothetical protein USA300HOU_0011 15441 - 15770 + | hypothetical protein TERM 15 16080 - 16106 + F 91 -4.5 -5.95539 | TGATAAGTATAAAGA CTTCTTACTTT TCAAT AGGGTGAGAAG TTTTTTTGTTTAAGG metX 16133 - 17101 + | homoserine O-acetyltransferase USA300HOU_0013 17392 - 18330 + | hypothetical protein USA300HOU_0014 18345 - 20312 + | DHH subfamily phosphodiesterase rplI 20309 - 20755 + | 50S ribosomal protein L9 TERM 16 20914 - 20882 - g 77 -9.2 -3.23711 | opp_overlap 20884 20887, overlap 20884 20887 TCCAGAATTGATTAA TACTACTCAGGAAG TTTTG CTTCCTGAGTCGTT TTATAGGGGTGCCCA TERM 17 20884 - 20912 + G 100 -12.5 -4.38712 | opp_overlap 20882 20884 20887, overlap 20887 CAGAATTGATTAATA CTACTCAGGAAGT TTT GCTTCCTGAGTCG TTTTATAGGGGTGCC TERM 18 20912 - 20884 - g 89 -11.8 -3.18033 | opp_overlap 20884 20887, overlap 20882 20887 CAGAATTGATTAATA CTACTCAGGAAG TTTTG CTTCCTGAGTCG TTTTATAGGGGTGCC TERM 19 20887 - 20909 + G 91 -12.8 -3.17598 | opp_overlap 20884 20882 20887, overlap 20884 AATTGATTAATACTA CTCAGGAAGT TTT GCTTCCTGAG TCGTTTTATAGGGGT TERM 20 20909 - 20887 - g 84 -12.1 -2.78266 | opp_overlap 20887 20884, overlap 20884 20882 AATTGATTAATACTA CTCAGGAAG TTTTG CTTCCTGAG TCGTTTTATAGGGGT TERM 21 21045 - 21033 - g 85 -10.5 -3.34895 | opp_overlap 21031 GGTACGTTGAATGAA GCGGG TGG CCCGC AATATCTTGCAGAGT dnaB1 20787 - 22187 + | replicative DNA helicase TERM 22 22198 - 22233 + F 74 -2.1 -5.64321 | gap 2, opp_overlap 22209 TGTAAAAAAGTTTTT CCGTACAA--TAATCAT TAAG ATGATAAAATTGTACGG TTTTTATTTTGTTCT purA 22465 - 23748 + | adenylosuccinate synthetase TERM 23 23789 - 23814 + F 85 -7.6 -4.84492 | opp_overlap 23789 ATTATAAATACATGA GCCTTCTATC TTTATT GGTAGGAGGC TTTTGTTATGCTTGC TERM 24 24339 - 24360 + F 100 -13.1 -5.58209 | opp_overlap 24339 TCGAGACCGTACAAA TGCCTATCC AAGA GGATAGGCA TTTTTTTGCGTTTAA TERM 25 24360 - 24339 - f 100 -13.1 -3.91144 | opp_overlap 24339 TCGAGACCGTACAAA TGCCTATCC AAGA GGATAGGCA TTTTTTTGCGTTTAA TERM 26 24398 - 24436 + F 90 -8.5 -4.89521 | gap 2, opp_overlap 24396 24398 TTAATAAAAGATATA TGGACGAAT-GAT-AATCA TAT TGATTTATCTGTTCGTCCA TTTTCTTTAAAATGT yycF 24946 - 25653 + | response regulator VicR USA300HOU_0019 25666 - 27492 + | sensor histidine kinase VicK yycH 27485 - 28819 + | hypothetical protein yycI 28820 - 29608 + | hypothetical protein TERM 27 29624 - 29665 + F 71 -3 -5.1861 | gap 1, opp_overlap 29624, overlap 29621 29618 29656 29658 TATGAATCGTAATAA GCTAGCATTGCAAGCTCAT CATAT GTGAGAA-GCGGTGCTAGC TTTTTTGCTGGTACG USA300HOU_0022 29998 - 30798 + | beta-lactamase TERM 28 32925 - 32911 - g 72 -5 -4.68424 | overlap 32913 CAAGTTATTTAAAAA CAGCTA ACT TAGCTA AGTATGATACGACAG USA300HOU_0023 30984 - 33344 + | 5'-nucleotidase TERM 29 33361 - 33396 + F 100 -9.2 -5.60993 | opp_overlap 33363, overlap 33363 33389 ATATATTGAAAATAA TACTACTGTATTTCTT AAAT AAGAGGTACGGTAGTG TTTTTTTATGAAAAA TERM 30 33363 - 33394 + F 100 -9.6 -4.45201 | opp_overlap 33363, overlap 33361 33389 ATATTGAAAATAATA CTACTGTATTTCTT AAAT AAGAGGTACGGTAG TGTTTTTTTATGAAA TERM 31 34009 - 34021 + G 74 -6.3 -4.3534 | opp_overlap 33998 33994 CGCATGACCCAAGGG CAAAG CGA CTTTG TTTTCGTCATTGGCG TERM 32 34107 - 34126 + G 73 -7.8 -3.76048 | opp_overlap 34103 CAGCAAAATGACATT CCCACATC AAAT GATGCGGG TTGTGTTAATTGAAC orfX 33712 - 34191 + | hypothetical protein TERM 33 34803 - 34848 + G 77 -8.8 -3.53811 | opp_overlap 34809 TCCGGAAGGAGAAGG CATAT-ACTTATCTTTGAATCA AGGA TGGT-CAAAGATAAGTGATATG TTTCCGCGGGATAAA USA300HOU_0025 34474 - 35769 + | hypothetical protein USA300HOU_0026 36551 - 35877 - | IS431mec transposase TERM 34 35920 - 35943 + g 82 -7.4 -4.58943 | opp_overlap 35920 35919 TGGCATGGCGAAAAT CCGTAGATCT GAAG AGACCTGCGG TTCTTTTTATATAGA TERM 35 36506 - 36492 - G 76 -10 -2.90763 | TGTATATCTTAGATA GTAGCC AAC GGCTAC AGTGATAACATCCTT TERM 36 37033 - 37080 + H 83 -3.2 -5.80817 | gap 2, opp_overlap 37033 CTAACTCGAAATAAA TAAGCATATCAC--TAAACT GATTTTTTAA AGTTTACAGTGATATGCTTA TTTTTTTATCTTACG TERM 37 37270 - 37251 - g 72 -5.8 -4.45399 | AGAGGAATAGTAAAA GCAATTCT AAGT AAAATTGC AGATAAGAGGTTTGT USA300HOU_0028 37074 - 37304 + | hypothetical protein ugpQ1 37813 - 38556 + | glycerophosphodiester phosphodiesterase maoC 38653 - 39081 + | acyl dehydratase MaoC TERM 38 39129 - 39079 - T 100 -15.9 -2.67428 | gap 1, opp_overlap 39079 39082 39087, overlap 39082 39087 CTTATTAATAATTCA TAATAAAACAGTGAAGCAA-CCAT CGTT ACGGATTGCTTCACTGTTTTGTTA TTCATCTATATCGTA TERM 39 39079 - 39129 + T 100 -15.9 -3.35912 | gap 1, opp_overlap 39079 39082 39087, overlap 39082 39087 CTTATTAATAATTCA TAATAAAACAGTGAAGCAA-CCAT CGTT ACGGATTGCTTCACTGTTTTGTTA TTCATCTATATCGTA TERM 40 39126 - 39082 - T 100 -13.2 -3.48153 | gap 1, opp_overlap 39079 39082 39087, overlap 39079 39087 ATTAATAATTCATAA TAAAACAGTGAAGCAA-CCAT CGTT ACGGATTGCTTCACTGTTTTG TTATTCATCTATATC TERM 41 39082 - 39126 + T 100 -13.2 -3.81089 | gap 1, opp_overlap 39082 39079 39087, overlap 39079 39087 ATTAATAATTCATAA TAAAACAGTGAAGCAA-CCAT CGTT ACGGATTGCTTCACTGTTTTG TTATTCATCTATATC TERM 42 39121 - 39087 - T 100 -13.1 -4.80959 | gap 1, opp_overlap 39082 39079 39087, overlap 39082 39079 TAATTCATAATAAAA CAGTGAAGCAA-CCAT CGTT ACGGATTGCTTCACTG TTTTGTTATTCATCT TERM 43 39087 - 39121 + T 100 -10.9 -4.93661 | gap 1, opp_overlap 39087 39082 39079, overlap 39082 39079 TAATTCATAATAAAA CAGTGAAGCAA-CCAT CGTT ACGGATTGCTTCACTG TTTTGTTATTCATCT mecA 41133 - 39127 - | penicillin binding protein 2 prime TERM 44 39958 - 39969 + g 74 -2.2 -5.48063 | AATCTGGAACTTGTT GAGC AGAG GTTC TTTTTTATCTTCGGT TERM 45 41153 - 41184 + H 81 -8.2 -4.04206 | opp_overlap 41153 41155, overlap 41155 ATACTCCTTATATAA GACTACATTTGTAG TATA TTACAAATGTAGTA TTTATGTCAAAATAA TERM 46 41155 - 41182 + H 90 -10.8 -3.615 | opp_overlap 41153 41155, overlap 41153 ACTCCTTATATAAGA CTACATTTGTAG TATA TTACAAATGTAG TATTTATGTCAAAAT TERM 47 41182 - 41155 - H 80 -10.1 -3.31905 | opp_overlap 41155 41153, overlap 41153 ACTCCTTATATAAGA CTACATTTGTA GTATAT TACAAATGTAG TATTTATGTCAAAAT mecR1 41305 - 42219 + | methicillin resistance regulatory protein MecR1 hsdR1 42143 - 42451 + | type I site-specific deoxyribonuclease restriction subunit USA300HOU_0034 43965 - 42442 - | IS1272 transposase TERM 48 42537 - 42505 - G 90 -8 -5.1925 | opp_overlap 42505 GGATAAGTGAAAAAA GACAATTTCTAT TGAAATAAT ATAGAAATTGTC TTTTTTATAAATTTT TERM 49 42505 - 42537 + g 90 -8 -5.35222 | opp_overlap 42505 GGATAAGTGAAAAAA GACAATTTCTAT TGAAATAAT ATAGAAATTGTC TTTTTTATAAATTTT TERM 50 43247 - 43233 - G 77 -5.8 -4.75289 | opp_overlap 43233 CATTATAAGATAAAA CAAATT GGG AATTTG TTGCTATTTGTAAAT TERM 51 44001 - 44017 + r 72 -8.1 -3.32066 | CACCACGGTGATGTC TGAATTC GTC GAATTCA TTGTCAGGAATTGTT USA300HOU_0035 44610 - 44101 - | hypothetical protein USA300HOU_0036 44933 - 44622 - | hypothetical protein TERM 52 44692 - 44659 - G 70 -2.4 -5.25699 | opp_overlap 44661, overlap 44660 44661 ATCACATAATAAAAA GCGTCCACGTCATC TTCACG AATGACGTAGACTT TCTTAGGTAATGCAT TERM 53 44690 - 44661 - G 73 -9.4 -2.83191 | opp_overlap 44661, overlap 44660 44659 CACATAATAAAAAGC GTCCACGTCATC TTCACG AATGACGTAGAC TTTCTTAGGTAATGC TERM 54 44661 - 44690 + g 71 -6.5 -4.21974 | opp_overlap 44661 44660 44659 CACATAATAAAAAGC GTCCACGTCAT CTTCACGA ATGACGTAGAC TTTCTTAGGTAATGC USA300HOU_0037 45027 - 44935 - | hypothetical protein USA300HOU_0038 45370 - 45020 - | hypothetical protein TERM 55 45641 - 45660 + r 95 -10.8 -3.96841 | AGTAACGGGATTTTG GGATTGTG CTTG CACAATCC TTCTGTTTCTTCGAA ccrB 47520 - 45892 - | cassette chromosome recombinase B TERM 56 45928 - 45955 + g 75 -9.9 -2.50354 | opp_overlap 45929, overlap 45927 45926 45935 TTGGGGCAAAAATAA AGACGAAGTGC TGAGAT GCACTTCGTCG AGTTGTTTATTATTG TERM 57 45954 - 45929 - G 100 -13.4 -4.85782 | opp_overlap 45928 45927 45926 45935 TGGGGCAAAAATAAA GACGAAGTGC TGAGAT GCACTTCGTC GAGTTGTTTATTATT TERM 58 47542 - 47564 + r 76 -7.8 -3.91352 | overlap 47545 ACATCCTTTCTTCAT TTATGCAATC GAT GATTGCATGG TTTGATTGACAATAT TERM 59 47545 - 47561 + r 75 -9.5 -3.02166 | overlap 47542 TCCTTTCTTCATTTA TGCAATC GAT GATTGCA TGGTTTGATTGACAA ccrA 48891 - 47542 - | cassette chromosome recombinase A TERM 60 48806 - 48822 + g 75 -7.3 -4.16814 | ATATGATGTTTTTCG GCTATTG CTT CGATAGC TTGTTTCTGTGCTGC TERM 61 48971 - 48947 - R 100 -14.4 -3.61983 | opp_overlap 48940 48937 48932 TGAATTGATATATAA GCCCAACATC AATGA GATGTTGGGC GTCCATATTAGTCAT USA300HOU_0041 50912 - 49125 - | hypothetical protein USA300HOU_0042 51202 - 50912 - | hypothetical protein TERM 62 52345 - 52357 + G 76 -4.1 -5.03145 | overlap 52356 TAACAATATTGAGTA CAATG TAT CGTTG TTTTTTAAAGCATTA USA300HOU_0043 51299 - 52390 + | hypothetical protein TERM 63 52884 - 52866 - f 73 -8.8 -3.17956 | AAATCATCGTAGTAA TCGCGCGA AAA TCGCGTGA AATAATCAGAGGAAT TERM 64 52939 - 52921 - f 73 -8.8 -3.17956 | AAATCATCGTAGTAA TCGCGCGA AAA TCGCGTGA AATAATCAGAGGAAT TERM 65 52994 - 52976 - f 73 -8.8 -3.17956 | opp_overlap 52972 AAATCATCGTAGTAA TCGCGCGA AAA TCGCGTGA AATACTATGGTAGAC USA300HOU_0044 53063 - 54553 + | transcriptional regulator TERM 66 54568 - 54604 + T 100 -11.7 -3.98448 | opp_overlap 54568 54566, overlap 54564 AAAAAACAAGAGATA GGTGCGAAGTGTTTGGA TTA TACAAATGCTTCGCATC TTATATTTATTAATA USA300HOU_0045 56181 - 55177 - | beta-lactamase USA300HOU_0046 56300 - 56437 + | hypothetical protein TERM 67 56771 - 56755 - f 81 -4.5 -5.34055 | overlap 56756 AGAAATACTAAAAAA CCTTTAA CGA TTAAAGA ATTAACCAAAATAGT TERM 68 56834 - 56853 + F 90 -7.2 -5.59879 | AAACTATCATTCAAC CCTCTTAA TTTA TTAGGAGG TTTTTTGTATTTATG USA300HOU_0048 56934 - 57554 + | hypothetical protein TERM 69 57591 - 57560 - T 100 -8.8 -5.60993 | gap 1, opp_overlap 57560 57562, overlap 57562 TGCGTTATAAAAAAA TAGAGCATCCTCCAC GTT ATGGAGG-TGCTCTG TTTTTTATTGAAAAG TERM 70 57560 - 57591 + T 100 -10.3 -5.4505 | gap 1, opp_overlap 57560 57562, overlap 57562 TGCGTTATAAAAAAA TAGAGCATCCTCCA CGTTA TGGAGG-TGCTCTG TTTTTTATTGAAAAG TERM 71 57562 - 57589 + T 100 -10.7 -4.36592 | gap 1, opp_overlap 57562 57560, overlap 57560 CGTTATAAAAAAATA GAGCATCCTCCA CGTTA TGGAGG-TGCTC TGTTTTTTATTGAAA TERM 72 57589 - 57562 - T 100 -11.4 -4.45201 | gap 1, opp_overlap 57560 57562, overlap 57560 CGTTATAAAAAAATA GAGCATCCTCCAC GTT ATGGAGG-TGCTC TGTTTTTTATTGAAA USA300HOU_0049 58641 - 58471 - | hypothetical protein USA300HOU_0050 59043 - 60008 + | hypothetical protein USA300HOU_0051 60105 - 60296 + | hypothetical protein USA300HOU_0052 60388 - 60717 + | hypothetical protein TERM 73 60769 - 60753 - T 90 -8 -5.33848 | opp_overlap 60753 ATTACAATTAAAAAA GGGAGT ATAGG ACTCCC TTAATAAGTTGATAT TERM 74 60786 - 60796 + T 82 -4 -5.52986 | opp_overlap 60786 TAATAAGTTGATATA TAAG TGA CTTA TTTTTTTAATAGAAT USA300HOU_0053 61162 - 60794 - | hypothetical protein USA300HOU_0054 61393 - 61560 + | hypothetical protein TERM 75 61683 - 61727 + T 100 -18.1 -5.13741 | TAAAAACACTATGTT CTAGGCTGCTAATTCTCTGTA TTT TACAGGGGATAAGTAGCCTAG TTTTTGTTGAATTCG USA300HOU_0055 62533 - 61724 - | integrase TERM 76 61865 - 61912 + g 100 -9.3 -5.08601 | gap 1 GAAACTTTCTATCGG GGCGTTATCGGCAG-GTGTTCC CTTTC GGGACATACTTCTGATAATGCC TTTTTCTTCGCATAA TERM 77 62268 - 62253 - G 71 -7.6 -3.60098 | opp_overlap 62252 ACTCGGCAGTTCAAA TGATGC TTCT GCATCA CTCTCTGTACTCTCT TERM 78 62585 - 62544 - H 88 -3.3 -6.02914 | TTCATAGAAAAAAAA CACCTCCGTATG-ATTCAT TTTAAT ATGAATTCA-ACGAAAGTG TTTTTATATAATTCC USA300HOU_0056 62553 - 62735 + | hypothetical protein TERM 79 62784 - 62819 + T 83 -6.9 -5.10208 | opp_overlap 62783 62782 62786, overlap 62786 AGACAAAAATAAATT GAGAGCATCCCTTAC CGCAAA GTGAAGGATGCTCTA TTTTTGTTGAAATTA TERM 80 62786 - 62817 + T 88 -9.5 -4.16909 | opp_overlap 62786 62783 62782, overlap 62784 ACAAAAATAAATTGA GAGCATCCCTTAC CGCAAA GTGAAGGATGCTC TATTTTTGTTGAAAT TERM 81 62817 - 62786 - T 78 -10.2 -2.8882 | opp_overlap 62784 62786, overlap 62783 62782 ACAAAAATAAATTGA GAGCATCCCTTACC GCAA AGTGAAGGATGCTC TATTTTTGTTGAAAT USA300HOU_0057 63543 - 63046 - | diamine N-acetyltransferase USA300HOU_0058 63859 - 63731 - | hypothetical protein adhC 64071 - 65168 + | alcohol dehydrogenase TERM 82 65406 - 65361 - T 83 -3.4 -5.71712 | gap 1, opp_overlap 65365 65365 65368, overlap 65363 65365 65367 65368 65370 TTTTAGATAAAAAAA GATATAGGAGCATCCTTCACC GCAAA AGTGAAGGATGCT-CTAGTTT TATTAGAATATAGTT TERM 83 65404 - 65363 - T 71 -6 -4.50122 | gap 1, opp_overlap 65365 65365 65368, overlap 65361 65365 65367 65368 65370 TTAGATAAAAAAAGA TATAGGAGCATCCTTCACC GCAAA AGTGAAGGATGCT-CTAGT TTTATTAGAATATAG TERM 84 65365 - 65403 + T 100 -10.4 -4.66987 | opp_overlap 65363 65361 65365 65367 65368 65370, overlap 65365 65368 AGATAAAAAAAGATA TAGGAGCATCCTTCAC CGCAAAA GTGAAGGATGCTCTAG TTTTATTAGAATATA TERM 85 65402 - 65365 - T 100 -13 -3.83161 | gap 1, opp_overlap 65365 65365 65368, overlap 65363 65361 65367 65368 65370 AGATAAAAAAAGATA TAGGAGCATCCTTCACC GCAAA AGTGAAGGATGCT-CTA GTTTTATTAGAATAT TERM 86 65365 - 65402 + T 100 -12.3 -3.39469 | gap 1, opp_overlap 65365 65363 65361 65367 65368 65370, overlap 65365 65368 AGATAAAAAAAGATA TAGGAGCATCCTTCAC CGCAAAA GTGAAGGATGCTC-TA GTTTTATTAGAATAT TERM 87 65401 - 65367 - T 100 -13.7 -3.46271 | opp_overlap 65365 65365 65368, overlap 65365 65363 65361 65368 65370 ATAAAAAAAGATATA GGAGCATCCTTCACC GCAAA AGTGAAGGATGCTCT AGTTTTATTAGAATA TERM 88 65400 - 65368 - T 100 -17.2 -2.65322 | opp_overlap 65365 65365 65368, overlap 65367 65365 65363 65361 65370 TAAAAAAAGATATAG GAGCATCCTTCACC GCAAA AGTGAAGGATGCTC TAGTTTTATTAGAAT TERM 89 65368 - 65400 + T 100 -16.5 -3.2594 | opp_overlap 65368 65367 65365 65363 65361 65370, overlap 65365 65365 TAAAAAAAGATATAG GAGCATCCTTCAC CGCAAAA GTGAAGGATGCTC TAGTTTTATTAGAAT TERM 90 65398 - 65370 - T 100 -14 -2.8337 | opp_overlap 65368 65365 65365, overlap 65368 65367 65365 65363 65361 AAAAAAGATATAGGA GCATCCTTCACC GCAAA AGTGAAGGATGC TCTAGTTTTATTAGA USA300HOU_0060 65647 - 65423 - | hypothetical protein USA300HOU_0061 66164 - 65661 - | hypothetical protein USA300HOU_0062 66506 - 66180 - | hypothetical protein TERM 91 66250 - 66217 - G 79 -4.6 -5.25699 | opp_overlap 66219, overlap 66218 66219 ATCACATAATAAAAA GCGTCTACATCATC TTCTCG GATGACGTAGACTT TCTTAGGTAATGCAT TERM 92 66249 - 66218 - G 75 -8.1 -3.73793 | opp_overlap 66219, overlap 66217 66219 TCACATAATAAAAAG CGTCTACATCATC TTCTCG GATGACGTAGACT TTCTTAGGTAATGCA TERM 93 66219 - 66248 + g 93 -10.1 -4.21974 | opp_overlap 66218 66217 66219 CACATAATAAAAAGC GTCTACATCATCT TCTC GGATGACGTAGAC TTTCTTAGGTAATGC TERM 94 66248 - 66219 - G 83 -11.6 -2.83191 | opp_overlap 66219, overlap 66218 66217 CACATAATAAAAAGC GTCTACATCATC TTCTCG GATGACGTAGAC TTTCTTAGGTAATGC USA300HOU_0063 66585 - 66493 - | hypothetical protein USA300HOU_0064 66928 - 66578 - | hypothetical protein TERM 95 67200 - 67219 + H 90 -10.8 -3.63276 | overlap 67211 AATAACGGGATTTTG GGATTGTG CTTG CACAATCC TTCTGCTTCTTCTAA TERM 96 67495 - 67470 - H 100 -9.8 -4.85782 | TGCGGTAAAAATAAA GACGAAGTGC TGGAAT ACACTTCGTC GATAATAAGGTAGTT TERM 97 68141 - 68156 + G 71 -7.6 -3.60098 | opp_overlap 68141 AGAGAGTACAGAGAA TGATGC AGAA GCATCA TTTGAACTGCCGAGT TERM 98 68156 - 68141 - g 71 -7.6 -3.63762 | opp_overlap 68141 AGAGAGTACAGAGAA TGATGC AGAA GCATCA TTTGAACTGCCGAGT TERM 99 68544 - 68497 - g 100 -9.3 -5.06414 | gap 1 TTGTGCGAAGAAAAA GGCATTATCAGAAGTATGTCCC GAAAG GGAACAC-CTGCCGATAACGCC CCGATAGAAAGTTTC TERM 100 68736 - 68692 - g 100 -16.7 -5.13741 | opp_overlap 68704 CGAATTCAACAAAAA CTAGGCTACTTATCCCCTGTA AAA TACAGAGAATTAATAGCCTAG AACATGGTGTTTTTA USA300HOU_0065 67885 - 68736 + | transposase arcC1 69765 - 68836 - | carbamate kinase TERM 101 69309 - 69294 - G 72 -8.2 -3.41878 | GTGGGGAAGGGACAA CGCGAC GATA GCCGCG TCCAGAATCTTCTAC arcB1 70783 - 69785 - | ornithine carbamoyltransferase USA300HOU_0068 71510 - 70821 - | Crp family transcriptional regulator TERM 102 71080 - 71104 + g 71 -7.9 -3.69902 | opp_overlap 71073, overlap 71073 71070 ACTTGAAATTGAATA GTCTCATTAAG TTT CTTGAAGAGAC TTTCAAATATTTCAT arcD1 72973 - 71552 - | arginine/ornithine APC transporter arcA1 74294 - 73059 - | arginine deiminase TERM 103 73752 - 73742 - G 70 -4 -4.8667 | TATATGTCATAAAAA TAGA TTC TCTA CGTCGTGCTCTCCAA argR1 75009 - 74563 - | arginine repressor USA300HOU_0072 75511 - 75942 + | universal stress protein TERM 104 76014 - 75976 - f 100 -14.1 -4.7629 | opp_overlap 75976 TTATTAATTCAAAAA GCCTAAATACTTTCTCA CAAAT CGAGAGAGTATTTAGGC TTTTTTATTTTTTTA TERM 105 75976 - 76014 + F 100 -15.6 -6.12458 | opp_overlap 75976 TTATTAATTCAAAAA GCCTAAATACTTTCTC ACAAATC GAGAGAGTATTTAGGC TTTTTTATTTTTTTA TERM 106 76123 - 76096 - f 90 -10 -3.95817 | overlap 76087 GAACAGCTAACCAAA GTGTTAGTAATC CAGG GAATACTAACAC AAAGGCAATTAATTT TERM 107 76260 - 76274 + F 77 -10 -2.90763 | AAGGATGTTATCACT GTAGCC GTT GGCTAC TATCTAAGATATGCA TERM 108 76845 - 76822 - f 81 -7.4 -4.58943 | opp_overlap 76822 76821 TCTATATAAAAAGAA CCGCAGGTCT CTTC AGATCTACGG ATTTTCGCCATGCCA TERM 109 77280 - 77291 + G 72 -5.8 -4.3898 | CATGGTCGTTCTGAA GGCA AGCG TGCC TTTTATAGCAATAGT USA300HOU_0075 77076 - 77891 + | lysophospholipase TERM 110 77997 - 77950 - f 83 -10.2 -3.43328 | opp_overlap 77953, overlap 77952 77953 77955 77967 TATTAAACATACTAA GATTAGCTATGAAGAAATCTAT GACG ATAGATTTTTTCATAGCTATTT TTTATAGTTATAGAG TERM 111 77995 - 77952 - f 100 -12.8 -3.27662 | opp_overlap 77953, overlap 77950 77953 77955 77967 TTAAACATACTAAGA TTAGCTATGAAGAAATCTAT GACG ATAGATTTTTTCATAGCTAT TTTTTATAGTTATAG TERM 112 77953 - 77994 + F 100 -18.5 -5.39755 | opp_overlap 77953 77952 77950 77955 77967 TAAACATACTAAGAT TAGCTATGAAGAAATCTAT GACG ATAGATTTTTTCATAGCTA TTTTTTATAGTTATA TERM 113 77994 - 77953 - f 100 -16.3 -2.55874 | opp_overlap 77953, overlap 77952 77950 77955 77967 TAAACATACTAAGAT TAGCTATGAAGAAATCTAT GACG ATAGATTTTTTCATAGCTA TTTTTTATAGTTATA TERM 114 77992 - 77955 - f 100 -14.5 -2.80437 | opp_overlap 77953, overlap 77953 77952 77950 77967 AACATACTAAGATTA GCTATGAAGAAATCTAT GACG ATAGATTTTTTCATAGC TATTTTTTATAGTTA TERM 115 78262 - 78251 - f 70 -4.4 -4.95155 | TGCACATTATAAAAA TGGA AAAT TCCA AAAAGAGTTTTTCAT TERM 116 79300 - 79271 - g 100 -11.5 -4.42976 | opp_overlap 79269 79267 79266 CTACAAACTAAGAAA GCAGCCTAATGAG AAAC CTCATAAGACTGC CATCATTGCTTGTAT TERM 117 79357 - 79333 - g 80 -6.6 -4.77438 | opp_overlap 79333, overlap 79334 ATCGATTATTAAAAA CGATTCATTA TCTGG TAATGAATCA TAAATTGTACGATTA TERM 118 79403 - 79362 - g 71 -6.7 -4.10331 | opp_overlap 79362 GTAATGAATCATAAA TTGTACGATTATCAAATGT CACC ACATTAGCCAAACGTACAA TTAAATATATTTTAA USA300HOU_0076 78378 - 79391 + | transposase TERM 119 79625 - 79613 - f 72 -6.3 -4.21908 | opp_overlap 79613 79612 TAGTACTATTCAAAA CGTAA TTA TTACG ATTTGAATTAAGCGA TERM 120 79913 - 79903 - g 74 -6.8 -4.41353 | GCAGAGACATTAAAA GGAC AAC GTCC ACTTACATACTATTT USA300HOU_0077 79651 - 80343 + | S-adenosyl-L-methionine-dependent methyltransferase USA300HOU_0078 80340 - 81893 + | nickel/peptide ABC transporter ATP-binding proteinprotein USA300HOU_0079 81896 - 82852 + | nickel/peptide ABC transporter ATP-binding/membrane protein USA300HOU_0080 82852 - 83619 + | nickel/peptide ABC transporter ATP-binding/membrane protein USA300HOU_0081 83586 - 84353 + | nickel/peptide ABC transporter ATP-binding protein TERM 121 84704 - 84682 - g 73 -9.2 -2.89935 | opp_overlap 84675 84686, overlap 84686 AAACAGCGTTATACA TCAAGCATTG AAG CAGTGCTTGA TCAGTGTAATTTACC USA300HOU_0082 84346 - 84981 + | nickel/peptide ABC transporter ATP-binding protein TERM 122 85678 - 85638 - f 100 -15.7 -5.00846 | opp_overlap 85640 85649, overlap 85639 85640 TAAATACTAGAAAAA TGGCCAGTAAATGAGTTTA CTA TAAACTCATTTACTGGCTT CTCTAATAATTATCA TERM 123 85677 - 85639 - f 100 -19.2 -3.58881 | opp_overlap 85640 85649, overlap 85638 85640 AAATACTAGAAAAAT GGCCAGTAAATGAGTTTA CTA TAAACTCATTTACTGGCT TCTCTAATAATTATC TERM 124 85640 - 85676 + F 100 -22.7 -3.58133 | opp_overlap 85639 85638 85640, overlap 85649 AATACTAGAAAAATG GCCAGTAAATGAGTTTA CTA TAAACTCATTTACTGGC TTCTCTAATAATTAT TERM 125 85676 - 85640 - f 100 -22.7 -2.73702 | opp_overlap 85640 85649, overlap 85639 85638 AATACTAGAAAAATG GCCAGTAAATGAGTTTA CTA TAAACTCATTTACTGGC TTCTCTAATAATTAT TERM 126 85649 - 85667 + F 80 -9 -3.81259 | opp_overlap 85640 85639 85638, overlap 85640 AAAATGGCCAGTAAA TGAGTTTA CTA TAAACTCA TTTACTGGCTTCTCT TERM 127 85950 - 85979 + F 88 -8.9 -4.4078 | gap 1, overlap 85929 CCCTGGGTGGGTATA TGTTATAGTATAAG TAG CTT-TACTATAACA TTTTCATTAGGAGGG TERM 128 86742 - 86732 - g 77 -5.4 -4.96276 | ACAAAAAAATCAAAA TGAC AAC GTCA TCGGGGGTTCTATTA USA300HOU_0084 86040 - 88064 + | P-ATPase superfamily P-type ATPase copper (Cu2+) transporter USA300HOU_0085 88082 - 88627 + | lipoprotein TERM 129 88716 - 88667 - T 100 -9.1 -5.1104 | gap 1, opp_overlap 88667, overlap 88657 AAATAGATATAAAAA TATCCTCCTTAATCAATAAT TTAAATAACTT ATTATTG-TTAAGGAGGATA TTTTTTAGTGTGTAA TERM 130 88667 - 88716 + T 100 -9.1 -5.24989 | gap 1, opp_overlap 88657 88667 AAATAGATATAAAAA TATCCTCCTTAATCAATAAT TTAAATAACTT ATTATTG-TTAAGGAGGATA TTTTTTAGTGTGTAA TERM 131 88843 - 88824 - T 70 -8.6 -2.53012 | overlap 88812 88823 88827 AACCGCATCATTAAC CGATACGC AGAG GCGTATCA TAAGTAAAACTAAAA USA300HOU_0086 88956 - 88819 - | hypothetical protein TERM 132 91214 - 91194 - R 78 -6.9 -4.62441 | opp_overlap 91194 TTTCACACAAACAAA GGAGGAA ACTTAAA TTCCTCC TTTCCCTTATTACTC USA300HOU_0089 91799 - 91701 - | hypothetical protein USA300HOU_0090 92655 - 91900 - | hypothetical protein USA300HOU_0091 92915 - 92655 - | hypothetical protein TERM 133 92999 - 92969 - H 79 -7.1 -4.44187 | gap 1, opp_overlap 92969 92978, overlap 92970 92971 92978 ATAGATAAACACAAA TGTGTCAAATACCC CTAG AGGTATTTGACA-A GTTCCATCCAACTGT TERM 134 92999 - 92970 - H 74 -8.7 -3.24885 | opp_overlap 92969 92978, overlap 92969 92971 92978 TAGATAAACACAAAT GTGTCAAATACCC CTAG AGGTATTTGACAA GTTCCATCCAACTGT TERM 135 92998 - 92971 - H 100 -12.2 -2.53847 | opp_overlap 92969 92978, overlap 92969 92970 92978 AGATAAACACAAATG TGTCAAATACCC CTAG AGGTATTTGACA AGTTCCATCCAACTG TERM 136 93704 - 93694 - g 71 -6.8 -4.15657 | opp_overlap 93690 93689, overlap 93690 GGAGAATTAGACAAA GCTG TAG CAGC GTTGATTATTGCAAA TERM 137 93824 - 93813 - g 70 -4.4 -4.67234 | AGTTAATGTTAAAAA GCAA GGTA TTGC AAAAATGTTTGATTT TERM 138 93960 - 93930 - g 73 -4.1 -4.88407 | overlap 93936 CTACGTAATGAAAAA GAAAAATGTTGAT TCATT ACCAACACTTATC AATCAAGCTATTGAG TERM 139 93954 - 93936 - g 84 -3.9 -5.67529 | overlap 93930 AATGAAAAAGAAAAA TGTTGAT TCATT ACCAACA CTTATCAATCAAGCT USA300HOU_0092 93052 - 94119 + | hypothetical protein USA300HOU_0093 94150 - 95484 + | hypothetical protein TERM 140 96748 - 96732 - T 82 -6.7 -4.86621 | opp_overlap 96732 ATTTTTAATGAAAAA TCTTTTA CTA TAAAAGA TTAAGTATTTAAATG TERM 141 96931 - 96890 - T 100 -13.4 -4.48449 | gap 1, opp_overlap 96890 TTATGAAAATAGAAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATCATCTCACTGCTG TTTTTTAAAGGTTTA TERM 142 96890 - 96931 + T 100 -11.2 -5.07107 | gap 1, opp_overlap 96890 TTATGAAAATAGAAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATCATCTCACTGCTG TTTTTTAAAGGTTTA USA300HOU_0095 97064 - 96963 - | hypothetical protein TERM 143 97148 - 97158 + r 89 -4 -5.95166 | TTTAATTTCATAATG TGTT GTA AACA TTTTTTTTGATTGGA USA300HOU_0096 98349 - 97363 - | hypothetical protein USA300HOU_0097 98658 - 98861 + | hypothetical protein USA300HOU_0098 98910 - 99206 + | hypothetical protein TERM 144 99266 - 99286 + T 100 -12.7 -4.09542 | opp_overlap 99266 99269, overlap 99255 99269 TGGTCGCTTGTTAAA GAAGAGTGA CGG TCACTCTTC TTTATGTGCATATTT TERM 145 99286 - 99266 - T 100 -12.7 -3.53012 | opp_overlap 99255 99266 99269, overlap 99269 TGGTCGCTTGTTAAA GAAGAGTGA CGG TCACTCTTC TTTATGTGCATATTT TERM 146 99283 - 99269 - T 82 -8.6 -3.90744 | opp_overlap 99269 99266 99255, overlap 99266 TCGCTTGTTAAAGAA GAGTGA CGG TCACTC TTCTTTATGTGCATA TERM 147 99269 - 99283 + T 83 -8.6 -4.15698 | opp_overlap 99266 99269, overlap 99266 99255 TCGCTTGTTAAAGAA GAGTGA CGG TCACTC TTCTTTATGTGCATA USA300HOU_0099 100498 - 99278 - | major facilitator transporter USA300HOU_0101 101025 - 100927 - | hypothetical protein TERM 148 101847 - 101829 - g 86 -6 -5.53991 | GAGTCATTAAAAAAA CACTTGAA AAA TTCAGGTG GGATTGCGCTATTGC USA300HOU_0102 101154 - 102014 + | transcriptional regulator TERM 149 102240 - 102288 + T 70 -5.6 -4.34486 | gap 2, overlap 102237 TGATTAATATTTTAA CCTGCTAAATGAGTAGCTTATGTA TTT TAAATA-GCTG-TCATCTAGCAGG TTCTTTATTATTAAT USA300HOU_0103 102902 - 102369 - | hypothetical protein USA300HOU_0104 102993 - 103736 + | transcriptional regulator TERM 150 104019 - 104031 + F 74 -6.3 -4.51812 | opp_overlap 104011 104019 CACATTATCAAATTA TTGAG TAT CTCAA TTTATTGTTATACAC USA300HOU_0105 104170 - 104772 + | hypothetical protein TERM 151 104779 - 104800 + F 75 -4.4 -5.21709 | GAAAGATAATTAAGG GAGTGCTC ATTCAG GAGTGCTC TTTTTTGATGTCCAA TERM 152 107846 - 107834 - g 70 -4.1 -4.77896 | TAAGGAAGGTAAAAA TGAAC CGA GCTCA TTTGTAATATCGCCT USA300HOU_0106 105039 - 108191 + | hypothetical protein USA300HOU_0107 108248 - 108730 + | hypothetical protein TERM 153 108737 - 108763 + F 86 -7.3 -5.20154 | opp_overlap 108737 AAAAGATAACGATAA GGAGCTGGC GATTATAAA GCTAGCTCC TTTTTTAACTTATAT plc 108935 - 109921 + | phosphatidylinositol diacylglycerol-lyase TERM 154 109987 - 109942 - f 80 -10.1 -3.35176 | gap 1, opp_overlap 109944, overlap 109944 109956 CAATAATGATATTAA GACGAGTA-TGAAAATAGTTAG ATT CTAATTATTTTCACTACTCGTT TTTATTTTGAAAATA TERM 155 109985 - 109944 - f 100 -12.7 -3.2326 | gap 1, opp_overlap 109944, overlap 109942 109956 ATAATGATATTAAGA CGAGTA-TGAAAATAGTTAG ATT CTAATTATTTTCACTACTCG TTTTTATTTTGAAAA TERM 156 109944 - 109985 + F 100 -14.9 -5.45802 | gap 1, opp_overlap 109944 109942 109956 ATAATGATATTAAGA CGAGTA-TGAAAATAGTTAG ATT CTAATTATTTTCACTACTCG TTTTTATTTTGAAAA USA300HOU_0109 110142 - 110912 + | staphylococcal tandem lipoprotein TERM 157 111082 - 111070 - g 77 -4.9 -5.18866 | CGGAAATAAAGAAAA GTTTT GAA AAAAC ATTGAGTATGTATCC USA300HOU_0110 110931 - 111734 + | tandem lipoprotein USA300HOU_0111 111798 - 112568 + | tandem lipoprotein USA300HOU_0112 112635 - 113402 + | staphylococcal tandem lipoprotein USA300HOU_0113 113496 - 115733 + | xylan 1,4-beta-xylosidase TERM 158 115746 - 115774 + F 95 -7.6 -5.47159 | opp_overlap 115736 115746 TAAAATGATCACAAA TCACAAATTTTG ATATA CATAATTTGTGA TTTTTTATATTCAAA TERM 159 115774 - 115746 - f 77 -7.6 -4.05816 | opp_overlap 115746, overlap 115736 TAAAATGATCACAAA TCACAAATTTTG ATATA CATAATTTGTGA TTTTTTATATTCAAA USA300HOU_0114 115884 - 117062 + | M20 family peptidase TERM 160 117823 - 117811 - g 79 -4.1 -5.25803 | AATGTTGAGAAAAAA GTAGA TAA TCCAC TTATTGATTTTAAAT USA300HOU_0115 117064 - 118452 + | major facilitator transporter TERM 161 118589 - 118630 + T 81 -8.2 -4.29073 | opp_overlap 118592, overlap 118592 ATAAATGAAAATGAA AAACCATCCACTTAAATT TTTGAT AAGTTAGGTGGATGGTTA TTTATTGCGTTGTTC TERM 162 118592 - 118627 + T 91 -9.9 -4.2416 | opp_overlap 118592, overlap 118589 AATGAAAATGAAAAA CCATCCACTTAAATT TTTGAT AAGTTAGGTGGATGG TTATTTATTGCGTTG TERM 163 118627 - 118592 - T 90 -7.7 -5.13016 | opp_overlap 118592 118589 AATGAAAATGAAAAA CCATCCACTTAAATT TTTGAT AAGTTAGGTGGATGG TTATTTATTGCGTTG TERM 164 118882 - 118858 - T 95 -7.9 -5.63517 | opp_overlap 118858 TTGCTAAACAAAAAA GCCAACCCA TGAATGT TGGATTGGC TTTTTACATGCATCT TERM 165 118858 - 118882 + T 73 -5.7 -4.67755 | opp_overlap 118858 TTGCTAAACAAAAAA GCCAACCCA TGAATGT TGGATTGGC TTTTTACATGCATCT USA300HOU_0116 120612 - 118945 - | PnaS family phosphate:sodium (Na+) symporter TERM 166 119479 - 119499 + g 74 -3.3 -5.38321 | opp_overlap 119468, overlap 119468 AACAGCTTGATGCTT TTGTTCAAG CTT TTTGATCAA TTTTTTATCGTCTTT USA300HOU_0117 122707 - 120932 - | myosin-cross-reactive antigen TERM 167 122617 - 122642 + g 80 -6.9 -4.54477 | opp_overlap 122621, overlap 122621 CAAGTGAAGCTAGAC CAGATCCGATT AAGT AAGCGGATTTG TTTTCTACATTTTCA TERM 168 122621 - 122638 + g 70 -4.1 -4.79683 | opp_overlap 122621, overlap 122617 TGAAGCTAGACCAGA TCCGATT AAGT AAGCGGA TTTGTTTTCTACATT USA300HOU_0118 123762 - 122881 - | DMT family permease TERM 169 124670 - 124657 - g 76 -2.5 -5.50723 | TGAGCAAAAGAAAAA TATAA TTAC TTATA GCGAAAGACATAATA TERM 170 124690 - 124718 + G 75 -4.7 -4.87803 | opp_overlap 124705, overlap 124700 AAGACATAATATTCC TATCATTGAAGAT GAT ATCTTTAGAGATA TTTTCTTTAGCGATC USA300HOU_0119 123866 - 125263 + | transcription regulator GntR USA300HOU_0120 125453 - 125926 + | hypothetical protein TERM 171 125922 - 125910 - f 74 -6.3 -4.49337 | overlap 125902 CTACAATTCATAAAA TGAGA GAT TCTCA ATAAAAATATAAACT TERM 172 126528 - 126547 + G 70 -3.6 -4.86731 | opp_overlap 126528 CAGTGGACCAAAGAA TCCAACTA TTAT TAATTGGA TTTTGTTTCAACGCA lctP 126188 - 127780 + | LctP family L-lactate permease TERM 173 127794 - 127815 + T 70 -5.9 -4.26019 | AAATATAAATAATGT TGTCACTTG GATT CAAATGACA TTTTAAATCTAATTA TERM 174 127880 - 127839 - T 81 -10.4 -3.20435 | gap 1, opp_overlap 127839, overlap 127844 CTAATTATTCATGAA TCGAACTAGTACGAAATGC AATGA GCATCTTGT-CTAGTTCGA TTTTTTAATGCCTAA TERM 175 127839 - 127880 + T 100 -10.4 -5.1675 | gap 1, opp_overlap 127839 127844 CTAATTATTCATGAA TCGAACTAGTACGAAATGC AATGA GCATCTTGT-CTAGTTCGA TTTTTTAATGCCTAA TERM 176 128005 - 127974 - T 100 -12.5 -5.85244 | gap 1, opp_overlap 127974 AAGTAAAATAAAAAA TGCACTGAGCAACA AAAGA TGTTGCTC-GTGCA TTTAGATGATTCTTA TERM 177 127974 - 128005 + T 100 -12.5 -3.74056 | gap 1, opp_overlap 127974 AAGTAAAATAAAAAA TGCACTGAGCAACA AAAGA TGTTGCTC-GTGCA TTTAGATGATTCTTA spa 129623 - 128109 - | immunoglobulin G binding protein A TERM 178 128633 - 128650 + g 80 -7.1 -4.50627 | GAGCATCGTTTAGCT TTTTAGC TTCT GCTAAAA TTTCTTTGCTCACTG TERM 179 129996 - 129964 - R 93 -8.5 -5.06052 | TTAAAAAATAGAAAA CACAAGTGCACTTTA GAA TACAGCACACTTGCG TAATAGAGATATTAT sarH1 130760 - 130008 - | staphylococcal accessory regulator H1 TERM 180 131055 - 131109 + r 75 -4.5 -5.14626 | gap 2, opp_overlap 131058, overlap 131056 131058 ACTATATGTATAAAA AAACCTCGCAACG--GTTAGTTAACTG AAT CATTTAGCTAACTTCGTTGTGAGGTCA TTTTGTTTTAATAAT TERM 181 131056 - 131108 + r 72 -8 -3.67149 | gap 2, opp_overlap 131058, overlap 131055 131058 CTATATGTATAAAAA AACCTCGCAACG--GTTAGTTAACTG AAT CATTTAGCTAACTTCGTTGTGAGGTC ATTTTGTTTTAATAA TERM 182 131058 - 131106 + r 83 -10.6 -3.39657 | gap 2, opp_overlap 131058, overlap 131056 131055 ATATGTATAAAAAAA CCTCGCAACG--GTTAGTTAACTG AAT CATTTAGCTAACTTCGTTGTGAGG TCATTTTGTTTTAAT TERM 183 131106 - 131058 - R 90 -6.2 -5.65177 | gap 2, opp_overlap 131058 131056 131055 ATATGTATAAAAAAA CCTCGCAACG--GTTAGTTAACTG AAT CATTTAGCTAACTTCGTTGTGAGG TCATTTTGTTTTAAT sirC 132127 - 131129 - | iron (Fe3+) ABC transporter membrane protein sirB 133119 - 132124 - | iron (Fe3+) ABC transporter membrane protein TERM 184 133003 - 133034 + g 79 -9.4 -3.39732 | opp_overlap 132994 133003, overlap 133001 ATCAAAGTTGAATAA CGCCTGTATCACCG TACC TGGTGACACAAGCG TATTTCCAATCATTA TERM 185 133034 - 133003 - G 95 -13.1 -3.71321 | opp_overlap 133003 133001, overlap 132994 ATCAAAGTTGAATAA CGCCTGTATCACC GTACCT GGTGACACAAGCG TATTTCCAATCATTA sirA 134109 - 133135 - | iron (Fe3+) ABC transporter binding protein TERM 186 134285 - 134307 + H 73 -8.6 -3.05384 | opp_overlap 134284 TATAATCCTAATTAC TTGATAGTGA GAA TCATTATCAA TTAGGTAACACACAA TERM 187 134970 - 134955 - g 74 -5.4 -4.72545 | AGAAAAATAAAAGAA GTGCAT CCAA ACGCAC AAATTGTTGCTGTTG USA300HOU_0127 134358 - 135338 + | pyridoxal-phosphate dependent enzyme ocd 135335 - 136345 + | ornithine cyclodeaminase USA300HOU_0129 136366 - 138120 + | IucA/IucC family siderophore biosynthesis protein USA300HOU_0130 138113 - 139369 + | major facilitator transporter USA300HOU_0131 139359 - 141095 + | IucA/IucC family siderophore biosynthesis protein TERM 188 142465 - 142451 - gf 73 -8.6 -3.09635 | AGCGTGAGCATTTAA GTGAAG CTG CTTCAC ACCTGACATTAAAGC USA300HOU_0132 141076 - 142854 + | IucA/IucC family siderophore biosynthesis protein USA300HOU_0133 142826 - 143605 + | HpcH/HpaI family aldolase lysA1 143605 - 144807 + | diaminopimelate decarboxylase USA300HOU_0135 144811 - 145575 + | hypothetical protein TERM 189 145649 - 145688 + F 100 -10.4 -5.28983 | gap 1 TAAAACAATATAGTG TGGAGAACTTTTGATATTT TAT AAATATTGAA-GTTCTCCA TTTTTGTATTTTGCA USA300HOU_0136 145771 - 146178 + | hypothetical protein TERM 190 146622 - 146600 - g 82 -3.4 -5.64274 | overlap 146601 TTAGGTAGAAAAAAA TTAGTAGCTG CAG CAGATACTAC CACTATTCAAAAAAG TERM 191 146621 - 146601 - g 73 -6.9 -3.9748 | overlap 146600 TAGGTAGAAAAAAAT TAGTAGCTG CAG CAGATACTA CCACTATTCAAAAAA USA300HOU_0137 146228 - 146854 + | hypothetical protein TERM 192 147303 - 147285 - g 70 -8.2 -3.17319 | opp_overlap 147293, overlap 147283 147289 TTTAACGCAGTAAGA CAAACTGC CGC GCAATTTG GCGATTTCCATGTCA USA300HOU_0138 147066 - 147842 + | acetoin reductase TERM 193 147868 - 147903 + F 100 -10.7 -5.16237 | opp_overlap 147860 147868 CTAATGATAAATAAA TCCTTATTGTTAAGT TTAATC ACTTAGCAGTAAGGA TTTTTTAGTGCACTT TERM 194 147903 - 147868 - f 76 -6.3 -4.62622 | opp_overlap 147868, overlap 147860 CTAATGATAAATAAA TCCTTATTGTTAAGT TTAATC ACTTAGCAGTAAGGA TTTTTTAGTGCACTT USA300HOU_0139 147986 - 148108 + | hypothetical protein galE 148178 - 149158 + | UDP-glucose 4-epimerase USA300HOU_0141 149121 - 149813 + | glycosyltransferase USA300HOU_0142 150023 - 151189 + | glycosyltransferase USA300HOU_0143 151170 - 152408 + | hypothetical protein USA300HOU_0144 152398 - 153828 + | MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter sodM 154096 - 154695 + | superoxide dismutase TERM 195 154716 - 154740 + F 100 -11.5 -5.38249 | opp_overlap 154715 CTTAATATAATTGAG GTGGAGCATCT ACA AGGTGTTCCAC TTTTTTGTACTTAAT TERM 196 155694 - 155672 - g 82 -3.4 -5.59655 | overlap 155673 CAAAGTAACAAAAAA GTTTTACCAG CTG CTGGTGAAAG TATGACATCAAGTAT TERM 197 155693 - 155673 - g 73 -6.9 -3.93353 | overlap 155672 AAAGTAACAAAAAAG TTTTACCAG CTG CTGGTGAAA GTATGACATCAAGTA sasD 155063 - 155788 + | cell wall surface anchor protein TERM 198 155827 - 155871 + T 100 -16.7 -3.66784 | gap 1, overlap 155828 155831 AAATCGTGTGATTAT C-TGAGCGAGCCTAGGACAT AAATCA ATGTCCTAGGCTCGCTAATG TTATATTGGCAGTAG TERM 199 155828 - 155869 + T 100 -20.4 -3.41292 | overlap 155827 155831 AATCGTGTGATTATC TGAGCGAGCCTAGGACAT AAATCA ATGTCCTAGGCTCGCTAA TGTTATATTGGCAGT TERM 200 155831 - 155866 + T 100 -22.1 -2.85947 | overlap 155828 155827 CGTGTGATTATCTGA GCGAGCCTAGGACAT AAATCA ATGTCCTAGGCTCGC TAATGTTATATTGGC TERM 201 155905 - 155917 + T 82 -7.7 -4.42851 | ACTGAATGAAATTGC GCTTG TAA CAAGC TTTTCCATTTCTTAC USA300HOU_0147 156735 - 155980 - | transcriptional regulator deoD1 156971 - 157678 + | purine nucleoside phosphorylase USA300HOU_0149 157685 - 159037 + | major facilitator superfamily tetracycline:cation symporter deoC1 159118 - 159780 + | deoxyribose-phosphate aldolase deoB1 159808 - 160986 + | phosphopentomutase TERM 202 161051 - 161010 - T 100 -16.1 -4.96762 | opp_overlap 161010 TAGATATTATAAAAA CAGCAGTGAAGTTAACTAT AACA ATAGTTTTCTTCACTGCTG TTTTTATTATAATAG TERM 203 161010 - 161051 + T 100 -16.1 -5.22006 | opp_overlap 161010 TAGATATTATAAAAA CAGCAGTGAAGTTAACTAT AACA ATAGTTTTCTTCACTGCTG TTTTTATTATAATAG USA300HOU_0152 161932 - 161117 - | ABC transporter ATP-binding protein USA300HOU_0153 162654 - 161929 - | ABC transporter ATP-binding protein TERM 204 162659 - 162706 + r 76 -8 -4.0056 | opp_overlap 162659 162665 162681, overlap 162704 ATGATTAACATGAAG GTAAAACTCGTTTTTAAAGAAA CCTT TTTCTTTAAAAGGGAGTCATAC TTTGTAGGTATTTCT TERM 205 162700 - 162665 - R 79 -7.8 -4.31688 | opp_overlap 162659, overlap 162659 162681 AACATGAAGGTAAAA CTCGTTTTTAAAGAAA CCTT TTTCTTTAAAAGGGAG TCATACTTTGTAGGT USA300HOU_0154 163504 - 162731 - | ABC transporter ATP-binding protein USA300HOU_0155 164674 - 163718 - | ABC transporter ATP-binding protein USA300HOU_0156 164903 - 166447 + | hypothetical protein TERM 206 166659 - 166683 + G 76 -6.5 -4.58213 | TTTTAAAATAGATAA TGGTGATTTTT TGC AAGGGTCACCA TTTTGTAATTACTTA USA300HOU_0157 166498 - 168033 + | nucleotidase TERM 207 168049 - 168072 + F 95 -6.8 -5.77734 | opp_overlap 168049, overlap 168043 CGGATATATGTAAAA CTTACTTGAT TTTA ATCGGGTAAG TTTTTGTTTTTGTTT TERM 208 168337 - 168371 + F 100 -16.6 -5.86976 | opp_overlap 168337 GCACCAATATTTAAA CCTCGAGCTGAAAAGA TCA TCATTTCAGTTCGAGG TTTTTTATTTTATCC TERM 209 168371 - 168337 - f 100 -14.4 -3.77831 | opp_overlap 168337 GCACCAATATTTAAA CCTCGAGCTGAAAAGA TCA TCATTTCAGTTCGAGG TTTTTTATTTTATCC TERM 210 169132 - 169150 + F 70 -6.1 -4.05747 | opp_overlap 169130 TAAAGATAATGCAGA TGTTGAA ATTGA TTCAACA TTTCTATGGCGTGTG TERM 211 169492 - 169506 + F 93 -5.8 -5.9003 | TCACTTATGCTCATC TACTTA AAA TAAGTA TTTTTTTGTTGGTTT USA300HOU_0160 169537 - 169863 + | hypothetical protein TERM 212 169874 - 169886 + F 75 -4.1 -5.1925 | ACTGAACGAAAATGC GCTTG TAA TAAGC TTTTTTCAATTCTAG TERM 213 169999 - 169976 - f 72 -6.8 -4.15044 | opp_overlap 169982, overlap 169949 169978 169982 CGGGGCCCCAACAAA GAGAAATTGG ATTC CCAATTTCTA CAGACAATGCAAGTT TERM 214 169997 - 169978 - f 81 -9.4 -3.6761 | opp_overlap 169982, overlap 169976 169982 GGGCCCCAACAAAGA GAAATTGG ATTC CCAATTTC TACAGACAATGCAAG TERM 215 170766 - 170747 - f 100 -13.6 -4.31433 | opp_overlap 170747 TAGCCGCAGAACAAA CCACCCGT TCAC ACGGGTGG TTTTTATTTGTAACA TERM 216 170747 - 170766 + F 100 -13.6 -5.38054 | opp_overlap 170747 TAGCCGCAGAACAAA CCACCCGT TCAC ACGGGTGG TTTTTATTTGTAACA TERM 217 172025 - 172011 - g 76 -2.8 -5.5604 | opp_overlap 172011 TGAATGAACAAAAAA CAGG TATTAAG CCTG ATATTGTCGGTAAAT USA300HOU_0162 171101 - 173710 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 218 173778 - 173804 + F 83 -6.6 -5.09762 | CCACATAAACTTTAA GTCGATAATCAT TAT ACGGTTATCGGC TTTTATTTATTGCCA TERM 219 174469 - 174452 - g 76 -4.1 -5.04987 | opp_overlap 174441, overlap 174441 174454 AAGATTCGGAAAAAA TTGCGAA TAGC TTCGCTA AAGTTACAAGTAAAC cap5A 174055 - 174723 + | capsular polysaccharide biosynthesis protein Cap5A cap5B 174739 - 175425 + | capsular polysaccharide biosynthesis protein Cap5B cap5C 175428 - 176192 + | capsular polysaccharide biosynthesis protein Cap5C TERM 220 176460 - 176499 + F 71 -8.6 -2.76815 | opp_overlap 176459, overlap 176459 TTTAATTGTTAAAGC TGTGACGACATCTATCGT TATT ACGATGGTGGTCGTGACA ATTGTTACAGGCAAT TERM 221 177881 - 177869 - f 72 -6.3 -4.25056 | overlap 177874 GAGCTTATGAATAAA GATGA GGT TCATC CTGAACAAGTATTTG TERM 222 178081 - 178094 + G 74 -5.3 -4.78752 | GATCATTCGGTAATG CTGTT ATGA AACAG TTTTTAGATTCTAAT cap5E 178026 - 179054 + | capsular polysaccharide biosynthesis protein Cap5E cap5F 179061 - 180176 + | capsular polysaccharide biosynthesis protein Cap5F TERM 223 181860 - 181850 - g 70 -4 -4.85195 | AAAACAATTGAAAAA CTTT TGG AAAG CAAGTGGTGGGAGAA cap5H 181307 - 181933 + | capsular polysaccharide biosynthesis protein Cap5H cap5I 181938 - 183047 + | capsular polysaccharide biosynthesis protein Cap5I cap5J 183061 - 184227 + | capsular polysaccharide biosynthesis protein Cap5J cap5K 184220 - 185425 + | capsular polysaccharide synthesis protein Cap5K cap5L 185426 - 186631 + | capsular polysaccharide biosynthesis protein Cap5L cap5M 186642 - 187199 + | capsular polysaccharide biosynthesis protein Cap5M TERM 224 187598 - 187588 - g 71 -5.4 -4.59773 | TGGTATTTCCAAAAA GTTC GCT GAAC AAGCATTACAAGAAT cap5N 187199 - 188086 + | capsular polysaccharide biosynthesis protein Cap5N cap5O 188140 - 189402 + | capsular polysaccharide biosynthesis protein Cap5O cap5P 189449 - 190624 + | capsular polysaccharide biosynthesis protein Cap5P isdG1 191009 - 190689 - | heme-degrading monooxygenase IsdI USA300HOU_0180 191405 - 191022 - | hypothetical protein aldH2 191832 - 193319 + | aldehyde dehydrogenase (NAD(+)) TERM 225 193459 - 193500 + F 100 -9.7 -4.94972 | opp_overlap 193459 193461, overlap 193461 TAATGACTAAAATAA TAGCAGTAGGATGGTTT TTAATTGC AAATCATCTTACTGCTG TTTTTAATTATGCTA TERM 226 193461 - 193498 + F 91 -10.1 -4.08682 | opp_overlap 193459 193461, overlap 193459 ATGACTAAAATAATA GCAGTAGGATGGTTT TTAATTGC AAATCATCTTACTGC TGTTTTTAATTATGC USA300HOU_0182 193965 - 194924 + | CDF family cation diffusion facilitator USA300HOU_0183 195189 - 194986 - | hypothetical protein USA300HOU_0184 195368 - 195880 + | hypothetical protein TERM 227 196146 - 196166 + F 86 -9.7 -3.71645 | opp_overlap 196146 CAATTCACGATATAA GGGCTGTGT TTG GCATAGCCC TTTAGATATACACTT USA300HOU_0185 196222 - 196962 + | nitrite/nitrate ABC transporter ATP-binding protein USA300HOU_0186 196976 - 197950 + | ABC transporter ATP-binding protein USA300HOU_0187 197947 - 198708 + | ABC transporter ATP-binding protein TERM 228 198886 - 198903 + F 75 -4.9 -5.02323 | GAAGCTGTATCGCAG TCTTGTT TGAC AACAGGA TTTTGTTTATGGTGC USA300HOU_0189 199970 - 200329 + | hypothetical protein fdh 200496 - 201527 + | formate dehydrogenase TERM 229 201589 - 201615 + F 93 -5.9 -5.71983 | overlap 201578 TGAATCATATAAGCA CTACTGCTGTT GTAAA GATGGCAGTAG TTTTTTTATGATTAC USA300HOU_0191 201913 - 203163 + | major facilitator superfamily multidrug cation symporter or antiporter TERM 230 204495 - 204507 + G 71 -7.7 -3.6502 | TCGCAATTACAGTGC GCGAA GTC TTCGC TTTCACTAGAGACTA TERM 231 208493 - 208507 + G 70 -7.2 -3.84027 | opp_overlap 208491, overlap 208491 CGACAATGAAGTATT TTTGCA ACA TGCAAA TATTGTTTTTGATGC USA300HOU_0192 203592 - 210785 + | non-ribosomal peptide synthetase USA300HOU_0193 210798 - 211442 + | holo-[acyl-carrier-protein] synthase TERM 232 211754 - 211704 - T 81 -7.2 -4.67982 | gap 1 TGTCAGTTAATAAAA TAACGTGAGCATCA-ATCATCAT ACTCAA ACGATGATTTAAAACTCACGTTA ATGTTAGTCAGTGTA USA300HOU_0194 212264 - 211770 - | hypothetical protein argB 213283 - 212519 - | acetylglutamate kinase argJ 214540 - 213299 - | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein argC 215586 - 214552 - | N-acetyl-gamma-glutamyl-phosphate reductase argD 216833 - 215622 - | ornithine aminotransferase TERM 233 216519 - 216544 + g 76 -2.7 -5.4756 | gap 1 GTTAAGGGGGAGTAC TTTGTCTTTCTT AGC AAGAT-GACAAA TTTTTTCTTCCCATT TERM 234 217019 - 217053 + r 100 -13 -2.83732 | opp_overlap 217019, overlap 217016 217014 217051 AGTATGAATAAAAAA TGCCACAAGCATATGT TTA ACATATGACTGTGGCA TAGTATTATGCTTGT TERM 235 217053 - 217019 - R 100 -15.2 -5.52023 | opp_overlap 217019 217016 217014 217051 AGTATGAATAAAAAA TGCCACAAGCATATGT TTA ACATATGACTGTGGCA TAGTATTATGCTTGT USA300HOU_0199 218414 - 217059 - | LIVCS family branched chain amino acid:cation symporter USA300HOU_0200 219247 - 218690 - | isochorismatase USA300HOU_0201 220954 - 219314 - | indolepyruvate decarboxylase TERM 236 221181 - 221214 + G 82 -8.9 -3.96892 | gap 1, opp_overlap 221181, overlap 221213 ATAGCAAAGAAAAAA CAGGCGCGT-CACCTT ATG AAGGTATACGCACCTG TTTATAGTAAGCATT TERM 237 221214 - 221181 - g 100 -13.3 -5.69793 | gap 1, opp_overlap 221181 221213 ATAGCAAAGAAAAAA CAGGCGCGT-CACCTT ATG AAGGTATACGCACCTG TTTATAGTAAGCATT USA300HOU_0202 221148 - 221249 + | hypothetical protein USA300HOU_0203 223288 - 221228 - | PTS family glucose/glucoside (glc) porter component IIABC TERM 238 221574 - 221560 - G 73 -8.6 -3.15579 | opp_overlap 221550 221560 221565 TGAATGGTGCACGAA CTTCAC CTT GTGAAG GTTTGATAGCGATAC TERM 239 223377 - 223323 - H 90 -4.5 -5.8187 | gap 2, opp_overlap 223334 223335 223338 223339, overlap 223335 223339 GATTCAATAAAAAAA GACACGAG-CAAA-TAGACTGTGTTGG TAA CCATCACAGCTTAATTTAACTCATGCC TAATCTTACTTAGTA TERM 240 223339 - 223359 + H 76 -9.7 -2.72591 | opp_overlap 223335 223323 223339, overlap 223338 223335 223334 ACACGAGCAAATAGA CTGTGTTGG TAA CCATCACAG CTTAATTTAACTCAT TERM 241 223359 - 223339 - H 80 -9.7 -3.31564 | opp_overlap 223339 223338 223335 223334, overlap 223335 223323 ACACGAGCAAATAGA CTGTGTTGG TAA CCATCACAG CTTAATTTAACTCAT USA300HOU_0204 223859 - 224914 + | hypothetical protein USA300HOU_0205 224914 - 225810 + | N-acetylmuramic acid-6-phosphate etherase USA300HOU_0206 225822 - 227276 + | PTS family sucrose porter component IIBC USA300HOU_0207 227276 - 228154 + | transcriptional regulator TERM 242 228329 - 228306 - f 81 -8.2 -4.13995 | opp_overlap 228306 GCGTGACAAATTAAA GCAAAGTTCA GATT TGAGCTTTGC TTTTTTCATAGATGG TERM 243 228306 - 228329 + F 100 -10.4 -5.1675 | opp_overlap 228306 GCGTGACAAATTAAA GCAAAGTTCA GATT TGAGCTTTGC TTTTTTCATAGATGG TERM 244 230199 - 230189 - g 77 -5.4 -4.86385 | overlap 230175 ACTTTTAAAAATAAA GCTT TAA AAGC AGAAGATAACAGCAT TERM 245 230408 - 230398 - g 79 -5.4 -5.10461 | GCGACTTAACAAAAA GTTG GAA CAAC CGTTAACGATAGCTG TERM 246 230525 - 230535 + G 71 -5.4 -4.56597 | opp_overlap 230525 GATTATAATAAAAAG TTCG AGA CGAA TTTTTCAACAGACAC hsdR2 228842 - 231631 + | type I site-specific deoxyribonuclease restriction subunit TERM 247 231638 - 231667 + F 89 -9.3 -4.29348 | gap 1, overlap 231636 231632 231639 GGTGTGTAATGATTC AGCCCCCT-CGCTA GAT TAGTGTAGGGGGCA TTATTATTTTCTATC TERM 248 231639 - 231666 + F 100 -12.8 -3.15982 | gap 1, overlap 231638 231636 231632 GTGTGTAATGATTCA GCCCCCT-CGCTA GAT TAGTGTAGGGGGC ATTATTATTTTCTAT USA300HOU_0209 231836 - 232678 + | hypothetical protein USA300HOU_0210 232680 - 233603 + | hypothetical protein USA300HOU_0211 233590 - 234702 + | hypothetical protein TERM 249 234774 - 234740 - Tf 100 -9.4 -4.56159 | gap 1, opp_overlap 234743, overlap 234743 CTAATAAAATATAAA TAATCCCCCG-CACT TCACAT AGTGGCGGGGGATTT ATTCTGGCGTTAAAA TERM 250 234771 - 234743 - Tf 100 -11.1 -4.34119 | gap 1, opp_overlap 234743, overlap 234740 ATAAAATATAAATAA TCCCCCG-CACT TCACAT AGTGGCGGGGGA TTTATTCTGGCGTTA TERM 251 234743 - 234771 + TF 100 -11.1 -4.33248 | gap 1, opp_overlap 234743 234740 ATAAAATATAAATAA TCCCCCG-CACT TCACAT AGTGGCGGGGGA TTTATTCTGGCGTTA USA300HOU_0212 236559 - 234967 - | oligopeptide ABC transporter ATP-binding protein TERM 252 236456 - 236482 + gF 76 -4.5 -5.055 | overlap 236457 ACAATACCTAGGATA TGTTTTTTTCG TAATT CGAAAGAGACG TTTTTTACCGCTTGA USA300HOU_0213 236558 - 237994 + | oligopeptide ABC transporter membrane protein USA300HOU_0214 238000 - 239163 + | oligopeptide ABC transporter membrane protein TERM 253 240846 - 240862 + G 73 -8.1 -3.6715 | opp_overlap 240845 240840 ATCAATTTATTAAGT TTTATCG TGG CGATAAA TTTAAAATTGCATCA rlp 239180 - 240955 + | RGD domain-containing lipoprotein TERM 254 241864 - 241888 + G 71 -7.9 -3.64599 | GATCTGTTGATTACT TGCATCATTTG ATA CAAGCGATGCA TTTAGCATATAGTGA ggt 240993 - 242999 + | T3 family gamma-glutamyltransferase USA300HOU_0217 244070 - 243297 - | lipoprotein TERM 255 243934 - 243944 + g 77 -5.4 -5.0133 | TTTTTAATAGGATAC GTAC TTA GTAC TTTTTTAAGACCATC TERM 256 244246 - 244220 - R 100 -9.5 -5.62045 | AGATACAATAAAAAA CTGCATGACGT TTGAG ACGTCACACAG TGTAACTAAAAATTT USA300HOU_0218 244886 - 244260 - | azoreductase TERM 257 245195 - 245185 - g 74 -5.4 -4.7173 | opp_overlap 245175, overlap 245175 GATGACATTCAAAAA TGGT TTA ACCA ATATACCGATAAATT USA300HOU_0219 245083 - 245673 + | M23 family peptidase TERM 258 245749 - 245703 - f 70 -3.8 -5.0538 | opp_overlap 245707, overlap 245707 CCGCAGTCTAAAAAA TTAAGCAATCATTGTGTGAGTA TGA TACTTACATAATGGTTGCTTTT TTCAATGAAAATCGT TERM 259 245745 - 245707 - f 82 -9 -3.93769 | opp_overlap 245707, overlap 245703 AGTCTAAAAAATTAA GCAATCATTGTGTGAGTA TGA TACTTACATAATGGTTGC TTTTTTCAATGAAAA TERM 260 245707 - 245745 + F 100 -15.6 -5.08824 | opp_overlap 245707 245703 AGTCTAAAAAATTAA GCAATCATTGTGTGAGTA TGA TACTTACATAATGGTTGC TTTTTTCAATGAAAA USA300HOU_0220 246056 - 247153 + | maltose/maltodextrin ABC transporter ATP-binding protein USA300HOU_0221 247166 - 248437 + | ABC transporter substrate-binding protein USA300HOU_0222 248440 - 249708 + | maltose/maltodextrin ABC transporter membrane protein USA300HOU_0223 249710 - 250549 + | maltose/maltodextrin ABC transporter membrane protein USA300HOU_0224 250620 - 251699 + | dehydrogenase USA300HOU_0225 251724 - 252764 + | dehydrogenase TERM 261 253602 - 253618 + G 73 -9.5 -2.87683 | opp_overlap 253612, overlap 253604 TTCCGTACAGTTGGT TATGGAC ATA GTCCATA TGTATGGGCAGATAT USA300HOU_0226 252819 - 253787 + | hypothetical protein TERM 262 254009 - 253966 - f 95 -11.3 -3.78034 | gap 1, opp_overlap 253967, overlap 253967 CATTCACAGTAACAA TCCTCACCATTGAAAAGAGT ATATA AC-CTTTTCAATAGTGAGGT ATATGATAATAAAAA TERM 263 254008 - 253967 - f 100 -14.8 -2.86338 | gap 1, opp_overlap 253967, overlap 253966 ATTCACAGTAACAAT CCTCACCATTGAAAAGAGT ATATA AC-CTTTTCAATAGTGAGG TATATGATAATAAAA TERM 264 253967 - 254008 + F 100 -12.6 -2.96216 | gap 1, opp_overlap 253967 253966 ATTCACAGTAACAAT CCTCACCATTGAAAAGAGT ATATA AC-CTTTTCAATAGTGAGG TATATGATAATAAAA USA300HOU_0227 253975 - 254076 + | hypothetical protein USA300HOU_0228 254721 - 254149 - | hypothetical protein USA300HOU_0229 254858 - 256255 + | sugar phosphate antiporter TERM 265 256449 - 256496 + T 100 -10.1 -4.49132 | opp_overlap 256448 256451 GTGACTCAATGAATT TACTCCTTACAATAAAGACAT ATAGCG GTGTCAATATTGTAGGGAGTA TTGTTTTATATTTAA TERM 266 256524 - 256563 + T 100 -16.6 -4.72272 | opp_overlap 256524 TAAACTCTCTAAAAA GCGGACTGAAAGAAAAGT GAAA ACTTCTCTATCAGTCCGC TTTTTCATAGAACAA TERM 267 256563 - 256524 - T 100 -18.8 -4.60924 | opp_overlap 256524 TAAACTCTCTAAAAA GCGGACTGAAAGAAAAGT GAAA ACTTCTCTATCAGTCCGC TTTTTCATAGAACAA USA300HOU_0230 257372 - 256614 - | response regulator USA300HOU_0231 258921 - 257365 - | sensor histidine kinase USA300HOU_0232 259886 - 258918 - | iron (Fe3+) ABC transporter membrane/binding protein TERM 268 260001 - 260018 + H 72 -2.7 -5.38054 | opp_overlap 260001 260014, overlap 260003 260014 TTAAGACGTTGCAAA TGTTGTG ATAG CACAAAA TTTTTGTTTGTCAAG TERM 269 261221 - 261211 - g 71 -5.4 -4.46212 | CCGTCCAGCAGAAAA CTTC AAA GAAG CAGTTCAATGGTTAT TERM 270 262319 - 262305 - g 80 -6.4 -4.66987 | TATACGGTAAGAAAA CTGGTA ACA CACCAG ACGGACGTAAAGCTG pfl 260459 - 262723 + | formate acetyltransferase TERM 271 263472 - 263495 + G 72 -8.2 -3.36803 | opp_overlap 263478 TACCGTTATGTTAAC TTCAAAGGGA AAAT TCCCGTTGAA TTATAAATACAATTC pflA 262746 - 263501 + | [formate-C-acetyltransferase]-activating enzyme TERM 272 263522 - 263561 + F 100 -9.4 -4.75174 | opp_overlap 263525, overlap 263525 ATTCAGACCGAAAAG AAAGCATATGCAACTTCA AGAG TGAAGGGGCATATGCTTC TTTTTCAATTGAGTA TERM 273 263558 - 263525 - f 100 -11.1 -4.70515 | opp_overlap 263525 263522 CAGACCGAAAAGAAA GCATATGCAACTTCA AGAG TGAAGGGGCATATGC TTCTTTTTCAATTGA TERM 274 263525 - 263558 + F 100 -11.1 -4.47888 | opp_overlap 263525, overlap 263522 CAGACCGAAAAGAAA GCATATGCAACTTCA AGAG TGAAGGGGCATATGC TTCTTTTTCAATTGA USA300HOU_0235 263605 - 263799 + | hypothetical protein TERM 275 263813 - 263794 - g 70 -3.7 -4.90266 | CTGAGTAATGAAAAA TATTAAG ATGAAA CTTAATA TTAAAGCAATGCGGA TERM 276 265371 - 265386 + G 76 -4 -5.29445 | AAACATCATTAGATT TCTTTG TCAT CGAAGA TTTTTCTTATTCGCC glpQ1 263786 - 265600 + | hypothetical protein TERM 277 265576 - 265586 + T 70 -4 -4.9138 | AACATACTTCGATCG TTCT ATA AGAA TTTTGTTTGAATAAT TERM 278 265647 - 265611 - T 100 -16.1 -4.72277 | opp_overlap 265611 AATAATATAAACAAA GACCTCTAAAGTTATCA AGA TGATACCTTCAGAGGTC TTTTTAATGTTGCCA TERM 279 265611 - 265647 + T 100 -13.9 -4.87626 | opp_overlap 265611 AATAATATAAACAAA GACCTCTAAAGTTATCA AGA TGATACCTTCAGAGGTC TTTTTAATGTTGCCA USA300HOU_0237 266108 - 265764 - | hypothetical protein USA300HOU_0238 266298 - 268127 + | staphylocoagulase precursor USA300HOU_0239 268416 - 268309 - | hypothetical protein USA300HOU_0240 269923 - 268730 - | acetyl-CoA C-acetyltransferase USA300HOU_0241 272205 - 269944 - | 3-hydroxyacyl-CoA dehydrogenase TERM 280 270340 - 270352 + g 73 -7.7 -3.88583 | ATAACCATAACGACG TGCCT CAA AGGCA TTTGTAGAGACTTTC USA300HOU_0242 273647 - 272391 - | acyl-CoA dehydrogenase USA300HOU_0243 275219 - 273714 - | long-chain-fatty-acid--CoA ligase USA300HOU_0244 276822 - 275245 - | 3-oxoacid CoA-transferase TERM 281 276135 - 276162 + g 79 -8.6 -3.80893 | TAACAACTTCATTCG GTTTTAGTTGAT AGTC GTCAACTAAAGC TTTAACTTGTACAAT USA300HOU_0245 277176 - 278405 + | hypothetical protein TERM 282 278668 - 278634 - T 100 -11.5 -4.16205 | opp_overlap 278634 TATAAGCAAATTAAA CCACGCCATAATCAT ATTGG ATGACTTCGGCGTGG TTTTTATAGTTGAAG TERM 283 278634 - 278668 + T 85 -7.1 -4.98255 | opp_overlap 278634 TATAAGCAAATTAAA CCACGCCATAATCAT ATTGG ATGACTTCGGCGTGG TTTTTATAGTTGAAG USA300HOU_0246 280194 - 278719 - | ABC transporter ATP-binding protein TERM 284 278932 - 278973 + g 74 -2.3 -5.42131 | overlap 278935 ATTAATTAAATCATC GACGTTGCTATTATTGTAG TCTC CTTTATTAATAGCACCATC TTTTTTATATGCTTG TERM 285 280409 - 280424 + r 72 -7.6 -3.59031 | opp_overlap 280407 280408 AAGTATTGAGCAACT GCTGTA GTAC TACAGC TTGGTTATGTTTAGT USA300HOU_0247 280748 - 280392 - | hypothetical protein TERM 286 280863 - 280890 + r 71 -5.6 -4.36262 | opp_overlap 280863 CTCCCAATTAAAAAA CAGCCATGAC AAAGTAAA GTCATAGCTG TTTTGGTATAGATGT TERM 287 280890 - 280863 - R 90 -7.8 -5.26875 | opp_overlap 280863 CTCCCAATTAAAAAA CAGCCATGAC AAAGTAAA GTCATAGCTG TTTTGGTATAGATGT USA300HOU_0248 281078 - 280905 - | hypothetical protein hmp 282249 - 281104 - | nitric oxide dioxygenase TERM 288 281895 - 281905 + g 74 -5.4 -4.81814 | TTGCCCAAGCTTGAA TGAC AGG GTCA TTTTCTTCTAATCCT USA300HOU_0250 282404 - 282511 + | hypothetical protein TERM 289 282611 - 282596 - f 71 -3.3 -5.24291 | opp_overlap 282596, overlap 282591 AAAATTAAAATAAAA TGTGA AATAAA TCACA ATTTAATATTGACCC TERM 290 283472 - 283453 - g 75 -8 -3.71917 | AGGGCAAAGCGCAAA TTGAACAA ATTT TTGTTCAA ACACGTGATGCAGCA ldh 282822 - 283775 + | L-lactate dehydrogenase TERM 291 283835 - 283874 + T 91 -8.7 -4.82667 | opp_overlap 283837, overlap 283837 CCAAAAAATTGTATA AAGGGCTATTTGATACA ACTATA TGTGTCGAGTAGCCCTA TTTTTAATGTAGTGA TERM 292 283837 - 283872 + T 100 -11.3 -4.02905 | opp_overlap 283837, overlap 283835 AAAAAATTGTATAAA GGGCTATTTGATACA ACTATA TGTGTCGAGTAGCCC TATTTTTAATGTAGT TERM 293 284065 - 284031 - T 79 -5.2 -5.32396 | gap 1 ACATTAAAAATAAAA GCAACGATGTCAC TTCTTACTTC GT-ACATCGTTGC CATTAGTTCTGTTGA USA300HOU_0252 285624 - 284095 - | PTS family glucose/glucoside (glc) porter component IIABC TERM 294 284996 - 284984 - G 77 -5.5 -5.01553 | opp_overlap 284984 AAGCCATAAACAAAA GTACC GAT GGCAC CTGTTTTCGTTACAA TERM 295 285141 - 285153 + g 78 -7.7 -4.12941 | opp_overlap 285140 285150, overlap 285148 AGAAACCTAAATACG GTGGT AAT ACCAC TTTGTGATATTTGTT USA300HOU_0253 285986 - 286921 + | purine nucleosidase TERM 296 286950 - 286981 + F 100 -10.2 -5.1167 | gap 1, opp_overlap 286941 286939 286950 AATAGATACAGTTAA CCCTAAGG-CGCCTG ATA TAAGCGTCCTTAGGG TTTTTGTATTGGGTT TERM 297 286981 - 286950 - f 93 -11.7 -3.18913 | gap 1, opp_overlap 286950, overlap 286941 286939 AATAGATACAGTTAA CCCTAAGG-CGCCT GATAT AAGCGTCCTTAGGG TTTTTGTATTGGGTT USA300HOU_0254 287031 - 287129 + | hypothetical protein TERM 298 287165 - 287153 - f 70 -6.3 -4.10453 | overlap 287136 GAAATGTTGTTAAAA CATCA CAA TGATG TACATGCTCATTTTG TERM 299 288309 - 288297 - g 74 -6.3 -4.34737 | opp_overlap 288296, overlap 288293 TGATGAATTAATAAA TCCTT TAC AAGGA AATTATCAATCCTTA USA300HOU_0255 287260 - 289356 + | transcription antiterminator USA300HOU_0256 289341 - 289808 + | PTS family porter component IIA TERM 300 290025 - 290014 - g 82 -3 -5.71983 | GCAATGACAAAAAAA GAAT ATAA ATTC CCAGTTATCAACGCA USA300HOU_0257 289831 - 290109 + | PTS family galactitol (gat) porter component IIB TERM 301 290165 - 290147 - f 76 -9 -3.40191 | overlap 290139 TCGATAACATATTAA TATATGCA AAT TGCATATA AATGACTATCACGAC gatC1 290336 - 291595 + | PTS family galactitol (gat) porter component IIC gutB 291610 - 292668 + | L-iditol 2-dehydrogenase USA300HOU_0260 292670 - 292816 + | hypothetical protein USA300HOU_0261 292840 - 293883 + | zinc (Zn2+)-binding dehydrogenase TERM 302 294300 - 294281 - f 81 -5.8 -5.252 | opp_overlap 294281 CATTTTTATAAAAAA TTATCACA CTAT TGTGACAA CTATCTTTGGATTAA ispD2 294411 - 295127 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase USA300HOU_0263 295120 - 296145 + | alcohol dehydrogenase TERM 303 296317 - 296303 - g 72 -2.8 -5.33026 | TAACCGAAACAAAAA CATTAG AAG CAAATG AAATGAAAATAGACG TERM 304 297243 - 297231 - g 83 -6.3 -4.86822 | AATTAGAGAAGAAAA TGTTG TAC CAACA GGTGTACCACGTACT tagB1 296167 - 297861 + | glycosyl/glycerophosphate transferase TERM 305 298071 - 298122 + F 85 -4.9 -5.64304 | opp_overlap 298063 298059 298090 298100 298104, overlap 298063 298117 AAATAATCGATCCAA TCGTTATCTAATTCATAA-ATGTGT AAAC ACATACGTTATGAAT-GGATAACGA TTTTTTGTTATGTTA TERM 306 298291 - 298272 - f 79 -5.7 -5.02439 | ATATAATTACAAAAA CACGTCG GAGGTA CGACATG ATTAAAAATACAATT tagF 298289 - 299458 + | CDP-glycerol glycerophosphotransferase USA300HOU_0266 299734 - 300450 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase USA300HOU_0267 300443 - 301468 + | zinc (Zn2+)-binding dehydrogenase TERM 307 302229 - 302215 - g 75 -5 -5.01546 | opp_overlap 302215 AAATTTAGATAAAAA GTATGA TAT TCACAC TGTTTTTAAAGCGAA TERM 308 302560 - 302548 - g 85 -6.3 -5.22289 | TATTAAAGAGAAAAA TGTAG TGC CTACA GGTGTTCCACGTACT TERM 309 302982 - 302994 + G 73 -4.1 -4.83615 | overlap 302992 ATTTAGAAGATTATA TTACG ACG CGTGA TTTTTATGAACCATA tagB2 301490 - 303178 + | glycosyl/glycerophosphate transferase USA300HOU_0269 303211 - 304935 + | glycosyltransferase TERM 310 304981 - 304936 - f 100 -12.9 -4.35958 | gap 1, opp_overlap 304941, overlap 304940 304941 CCACTAAATAAATAA TAAATGCCCTCAAATCATTGTG AGC CAACATGATTTGAGGGC-TTTA TTTTGCTGTTTATGA TERM 311 304978 - 304940 - f 100 -11.8 -4.71584 | opp_overlap 304941, overlap 304936 304941 TAAATAAATAATAAA TGCCCTCAAATCATTGTG AGC CAACATGATTTGAGGGCT TTATTTTGCTGTTTA TERM 312 304977 - 304941 - f 100 -15.3 -3.4051 | opp_overlap 304941, overlap 304940 304936 AAATAAATAATAAAT GCCCTCAAATCATTGTG AGC CAACATGATTTGAGGGC TTTATTTTGCTGTTT TERM 313 304941 - 304977 + F 100 -15.3 -4.79053 | opp_overlap 304941 304940 304936 AAATAAATAATAAAT GCCCTCAAATCATTGTG AGC CAACATGATTTGAGGGC TTTATTTTGCTGTTT scdA 305075 - 305749 + | cell wall biosynthesis protein ScdA lytS 305996 - 307750 + | sensor histidine kinase LytS lytR 307753 - 308493 + | response regulator LytR TERM 314 308482 - 308502 + F 100 -8.4 -5.97575 | opp_overlap 308485 TTTAAAGCGTCGATA GGATTACT TTAAC AGTAATCC TTTTTTTTATGCATT lrgA 308606 - 309049 + | murein hydrolase regulator LrgA lrgB 309042 - 309743 + | antiholin-like protein LrgB TERM 315 309802 - 309836 + T 100 -15.2 -5.1634 | opp_overlap 309802 ATTATCGTAAAAAAA CGTCTATACTCCAGTT TAT AACTGGGATATAGACG TTTTTATGTATTTAT TERM 316 309836 - 309802 - T 100 -15.2 -5.44721 | opp_overlap 309802 ATTATCGTAAAAAAA CGTCTATACTCCAGTT TAT AACTGGGATATAGACG TTTTTATGTATTTAT USA300HOU_0275 310555 - 309851 - | GntR family transcriptional regulator TERM 317 310278 - 310264 - G 80 -7.2 -4.58283 | opp_overlap 310264 CAATCTCCTTAAAAA CAAGTA CCT TACTTG TCATTCGGTGTTCAC USA300HOU_0276 310704 - 311495 + | PTS family glucose/glucoside (glc) porter component IIABC bglA 311511 - 312947 + | 6-phospho-beta-glucosidase USA300HOU_0278 313019 - 313210 + | hypothetical protein USA300HOU_0279 314142 - 313381 - | hypothetical protein rbsK 315307 - 314393 - | ribokinase rbsD 315739 - 315335 - | D-ribose pyranase USA300HOU_0282 316635 - 315754 - | DMT superfamily drug/metabolite transporter TERM 318 316830 - 316804 - R 100 -10.2 -4.7871 | AATTATGATTAAAAA CCCTCAGCATTA AAG CAACGCTAAGGG CCTAACAATGATGAG USA300HOU_0283 317865 - 316867 - | ribose operon repressor USA300HOU_0284 318016 - 318195 + | hypothetical protein USA300HOU_0285 318245 - 318637 + | hypothetical protein TERM 319 318683 - 318738 + F 100 -13.1 -3.91032 | gap 1, opp_overlap 318690, overlap 318690 TGGGACATAAATCCC TAAAAAACAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTGTTCTCTA TTTATACAATACTTC TERM 320 318690 - 318731 + F 100 -15.6 -3.80279 | gap 1, opp_overlap 318690, overlap 318683 TAAATCCCTAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 321 318731 - 318690 - f 100 -15.6 -5.07107 | gap 1, opp_overlap 318690 318683 TAAATCCCTAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA USA300HOU_0286 318865 - 319269 + | transposase USA300HOU_0287 320695 - 319310 - | major facilitator transporter TERM 322 320662 - 320642 - G 73 -9.1 -2.87443 | overlap 320641 TGCAGACAACATAAT CGCAATAAT AAT ATTACTGCG TGGTGAAGATTGTGT USA300HOU_0288 320920 - 321912 + | C59 family penicillin amidase lytM 322220 - 323188 + | peptidoglycan hydrolase TERM 323 323234 - 323193 - T 87 -11.1 -3.2575 | gap 1, opp_overlap 323198, overlap 323198 AAAGTAGATAATACA GAAAATCCCAAGTTGCG-AT ATC ATACGCAGCTTGGGATTTTT TCGTTTTAATAATAG TERM 324 323198 - 323229 + T 100 -13.2 -5.48054 | gap 1, opp_overlap 323193 323198 AGATAATACAGAAAA TCCCAAGTTGCGATA TCA TA-CGCAGCTTGGGA TTTTTTCGTTTTAAT TERM 325 323229 - 323198 - T 100 -11 -4.72127 | gap 1, opp_overlap 323198, overlap 323193 AGATAATACAGAAAA TCCCAAGTTGCG-AT ATC ATACGCAGCTTGGGA TTTTTTCGTTTTAAT USA300HOU_0290 323899 - 323240 - | ABC transporter ATP-binding protein USA300HOU_0291 324833 - 323913 - | hypothetical protein USA300HOU_0292 325996 - 324830 - | hypothetical protein TERM 326 325305 - 325293 - G 72 -4.9 -4.82901 | CGCTCTTTAGAAAAA TGAAA CAT TTTCA ATCGCGCTTTCAATA TERM 327 326016 - 326049 + r 100 -9.1 -5.30339 | gap 1, opp_overlap 326016 326019 CCACTCCTCCAATGA TAAGATTGAAAGG-CA AGA TGACCTTCCAATCTTA TTTTTATATTTTAGT TERM 328 326049 - 326016 - R 85 -11.3 -2.71364 | gap 1, opp_overlap 326016, overlap 326019 CCACTCCTCCAATGA TAAGATTGAAAGG-CA AGA TGACCTTCCAATCTTA TTTTTATATTTTAGT TERM 329 326046 - 326019 - R 76 -8.6 -3.50853 | gap 1, opp_overlap 326016, overlap 326016 CTCCTCCAATGATAA GATTGAAAGG-CA AGA TGACCTTCCAATC TTATTTTTATATTTT USA300HOU_0293 327587 - 326064 - | hypothetical protein USA300HOU_0294 327858 - 328511 + | hypothetical protein USA300HOU_0295 328545 - 329132 + | hypothetical protein TERM 330 329205 - 329251 + T 100 -9.7 -5.16841 | gap 2, opp_overlap 329205 AACATACAAAATAAA GCGACCAATTTTGCAGTGTTACG AAT TGTAA-ACTGCGAACT-GGTCGC TTTTTATTGATGTCA TERM 331 329251 - 329205 - T 93 -9 -4.87008 | gap 2, opp_overlap 329205 AACATACAAAATAAA GCGACCAATTTTGCAGTGTTAC GAATT GTAA-ACTGCGAA-CTGGTCGC TTTTTATTGATGTCA USA300HOU_0296 330177 - 329275 - | hypothetical protein esxA 330416 - 330709 + | hypothetical protein TERM 332 330718 - 330759 + F 81 -4.5 -5.40072 | opp_overlap 330721 330729, overlap 330724 330729 GCAATAAGCATTCTG AAATTGGCAAAGTCACATT TTCT AATGTGGCTTTGCTTATCA TTTTTTTAAGAAAAC TERM 333 330724 - 330753 + F 100 -14.5 -3.86495 | opp_overlap 330721 330729, overlap 330718 330729 AGCATTCTGAAATTG GCAAAGTCACATT TTCT AATGTGGCTTTGC TTATCATTTTTTTAA TERM 334 330729 - 330748 + F 75 -7.2 -4.06805 | opp_overlap 330729 330721, overlap 330724 330718 TCTGAAATTGGCAAA GTCACATT TTCT AATGTGGC TTTGCTTATCATTTT esaA 330793 - 333822 + | hypothetical protein TERM 335 334068 - 334043 - gf 100 -16.3 -4.10657 | opp_overlap 334047 TGATATGTTTCAAAA TCAAGCGAGTC ACTC GACTCGCTTGA ATGAAACTAAAAAAG TERM 336 334047 - 334064 + GF 91 -11.3 -3.06183 | opp_overlap 334043 ATGTTTCAAAATCAA GCGAGTC ACTC GACTCGC TTGAATGAAACTAAA essA 333822 - 334280 + | virulence protein EssA esaB 334252 - 334494 + | virulence protein EsaB essB 334507 - 335841 + | hypothetical protein TERM 337 339845 - 339826 - g 77 -5 -5.02715 | overlap 339828 ATATTAAATGAAAAA TATGCGAT TTGT ATCGCAGA CTCAAGTGGAGAGTT TERM 338 339843 - 339828 - g 78 -7.6 -4.12375 | overlap 339826 ATTAAATGAAAAATA TGCGAT TTGT ATCGCA GACTCAAGTGGAGAG essC 335863 - 340302 + | virulence protein EssC esaC 340332 - 340724 + | virulence protein EsaC esxB 340740 - 341054 + | virulence protein EsxB USA300HOU_0305 341051 - 341728 + | hypothetical protein USA300HOU_0306 341728 - 342045 + | hypothetical protein USA300HOU_0307 342055 - 343899 + | hypothetical protein USA300HOU_0308 343910 - 344401 + | hypothetical protein TERM 339 344443 - 344417 - f 70 -8.2 -3.18452 | opp_overlap 344417, overlap 344406 ACTATCTTAATGTAA GACTAAACAA TAAAGCT TTGTTTAGTC TTTTTAGCGTTTAAG TERM 340 344417 - 344443 + F 87 -8.2 -4.70879 | opp_overlap 344406 344417 ACTATCTTAATGTAA GACTAAACAA TAAAGCT TTGTTTAGTC TTTTTAGCGTTTAAG USA300HOU_0309 344609 - 345292 + | hypothetical protein USA300HOU_0310 345439 - 346050 + | hypothetical protein TERM 341 346342 - 346364 + G 88 -7.8 -5.14698 | opp_overlap 346333 346341 346340, overlap 346333 AAGTTATTGCAAATT GCAATTATCG TAA CAATAATTGC TTTTGTTTTAAATTT USA300HOU_0311 346186 - 346404 + | hypothetical protein TERM 342 346424 - 346455 + F 100 -9.6 -5.27335 | opp_overlap 346424 AACGAATTTGAAGAA GCATTAAGCGACAT TTGG GTGTTGTTTAATGC TTTTTATTTAACGGA USA300HOU_0312 346536 - 347036 + | hypothetical protein USA300HOU_0313 347047 - 347547 + | hypothetical protein USA300HOU_0315 348064 - 348555 + | hypothetical protein TERM 343 348571 - 348597 + F 71 -4.6 -4.70879 | opp_overlap 348560 348557 348571 ACAATCTTAATGTAA GATTAAACAA TAAAGCT TTGTTTAGTC TTTTTAGCGTTTAAG USA300HOU_0316 348765 - 349448 + | hypothetical protein TERM 344 349946 - 349977 + F 79 -5.2 -5.27335 | TATTAATTTGAAGAA GCATTAAGCGACGT AGAG GTGTTGTTTAGTGC TTTTTATTTAACGGA USA300HOU_0317 350034 - 350534 + | hypothetical protein USA300HOU_0318 350546 - 351046 + | hypothetical protein USA300HOU_0319 351568 - 352068 + | hypothetical protein TERM 345 352506 - 352490 - g 76 -3.7 -5.29782 | opp_overlap 352483, overlap 352492 TATATGTACAAAAAA TTTGGTA TTT TACCAGA TATGGAATATGAAAT USA300HOU_0320 352079 - 352567 + | hypothetical protein USA300HOU_0321 352588 - 352701 + | hypothetical protein USA300HOU_0322 353187 - 353564 + | hypothetical protein USA300HOU_0323 353717 - 354115 + | hypothetical protein TERM 346 354157 - 354215 + T 95 -12.1 -3.48738 | opp_overlap 354161 354162 354206, overlap 354162 TCTTAAGTAATTAAA TAAAGTGCTCTCTTAGAAGTAGATTTT CAGTC AATAACTGCTTTTAAGAGAGCATTTTG TATTTGATAATGCTC TERM 347 354162 - 354210 + T 100 -12 -4.82128 | opp_overlap 354162 354161 354206, overlap 354157 AGTAATTAAATAAAG TGCTCTCTTAGAAGTAGATTTT CAGTC AATAACTGCTTTTAAGAGAGCA TTTTGTATTTGATAA TERM 348 354316 - 354270 - T 89 -6.9 -5.47399 | gap 2, opp_overlap 354270, overlap 354272 CGAACTTTAAAAAAA TACGTTAGACAATGCACTTCTAA ATA TTA-AAG-GCATCGACTAACGCA TTGTTCAAATATAGT TERM 349 354314 - 354272 - T 79 -7.3 -4.36993 | gap 2, opp_overlap 354270, overlap 354270 AACTTTAAAAAAATA CGTTAGACAATGCACTTCTAA ATA TTA-AAG-GCATCGACTAACG CATTGTTCAAATATA USA300HOU_0324 355176 - 354331 - | FNT family formate-nitrite transporter TERM 350 354806 - 354796 - G 72 -2.6 -5.25772 | AAAGCATAATAAAAA TATT TTC AATA CTCTAGTTGGTTTAA TERM 351 355379 - 355348 - RH 100 -12.5 -5.37043 | ATTTCATATAAAAAA GCCTAGTAACGAT GGGTCA ATCATTACTAGGC AGTGAGCATTTATTA brnQ1 356699 - 355392 - | LIVCS family branched chain amino acid:cation symporter USA300HOU_0326 356620 - 356859 + | hypothetical protein TERM 352 358142 - 358131 - g 70 -4.4 -4.72386 | TAAATTACGTAAAAA TGCT ATTA AGCA ATTCGATCCTAAAAC USA300HOU_0327 357283 - 358173 + | acid phosphatase TERM 353 358187 - 358218 + F 100 -11 -4.7629 | AATATATGAATTGGA CGTCTACATGTACT TAAA GGTATATGTAGGCG TTTTTAAATTGATCC USA300HOU_0328 358422 - 359471 + | ABC transporter ATP-binding protein USA300HOU_0329 359484 - 360161 + | ABC transporter ATP-binding protein TERM 354 360170 - 360192 + F 82 -6.2 -5.26155 | opp_overlap 360171, overlap 360172 AGAATAGTTTTATTA AGCCGGTACA TCA TGTGCCGGTA TTTTTATGTTTATGT TERM 355 360172 - 360190 + F 100 -11 -4.23487 | opp_overlap 360171, overlap 360170 AATAGTTTTATTAAG CCGGTACA TCA TGTGCCGG TATTTTTATGTTTAT USA300HOU_0330 360369 - 361400 + | PfoR family transcriptional regulator TERM 356 362062 - 362074 + GF 83 -4.8 -5.39721 | ACTTAGGTAGGCTTG GCGA AACGG TCGC TTTTTTATCTGCTAG USA300HOU_0331 361743 - 362861 + | PfkB family carbohydrate kinase USA300HOU_0332 362836 - 363759 + | hypothetical protein USA300HOU_0333 363770 - 364990 + | nucleoside transporter TERM 357 365032 - 365079 + T 74 -6.4 -4.4648 | gap 2, opp_overlap 365032 CATGGCAAAGCTAAA CCCCGTCACCAAG-T-TGGCGC AACAGC GCATCATAACTTAGTGACGGGG TTTTATCATAACAAT TERM 358 365079 - 365032 - T 84 -9.3 -3.85165 | gap 2, opp_overlap 365032 CATGGCAAAGCTAAA CCCCGTCACCAAG-T-TGGCGCA ACAG CGCATCATAACTTAGTGACGGGG TTTTATCATAACAAT USA300HOU_0334 366627 - 365095 - | SSS family solute/sodium (Na+) symporter nanA 367548 - 366667 - | N-acetylneuraminate lyase USA300HOU_0336 367664 - 368566 + | transcriptional regulator USA300HOU_0337 369644 - 368844 - | transcriptional regulator nanE 369784 - 370452 + | N-acetylmannosamine-6-phosphate 2-epimerase USA300HOU_0339 371940 - 370579 - | hypothetical protein TERM 359 372120 - 372092 - H 77 -8.9 -3.61922 | opp_overlap 372079 372086, overlap 372093 AATATTTATCTTAAA TGTTGTTGTGTTG ATT CAACACCACAACT AAAAGTGTTTATAAA TERM 360 372119 - 372093 - H 100 -12.4 -2.76671 | opp_overlap 372086, overlap 372092 ATATTTATCTTAAAT GTTGTTGTGTTG ATT CAACACCACAAC TAAAAGTGTTTATAA TERM 361 373135 - 373123 - g 72 -9.1 -2.74696 | overlap 373122 373120 CAACTAATCAAAGAT GCGCT TCA AGCGC CTAAAACACGTTCGA lip1 372310 - 374382 + | triacylglycerol lipase TERM 362 374489 - 374528 + T 78 -9.3 -3.34646 | opp_overlap 374490 374491, overlap 374487 374486 374491 AGTAAAGTGAAATAA AGCGCCTGTCTCATTAG CGAAAA CTAAAGGGACAGGCGTA TCTGTTTATGAGCTT TERM 363 374527 - 374490 - T 100 -9.1 -4.53439 | opp_overlap 374489 374487 374486 374491, overlap 374491 GTAAAGTGAAATAAA GCGCCTGTCTCATTAGC GAAA ACTAAAGGGACAGGCGT ATCTGTTTATGAGCT TERM 364 374491 - 374526 + T 100 -14.1 -3.23335 | opp_overlap 374491 374490, overlap 374489 374487 374486 TAAAGTGAAATAAAG CGCCTGTCTCATTAG CGAAAA CTAAAGGGACAGGCG TATCTGTTTATGAGC TERM 365 374526 - 374491 - T 100 -12.6 -3.30979 | opp_overlap 374489 374487 374486 374491, overlap 374490 TAAAGTGAAATAAAG CGCCTGTCTCATTAGC GAAA ACTAAAGGGACAGGCG TATCTGTTTATGAGC USA300HOU_0341 375451 - 374624 - | hypothetical protein USA300HOU_0342 376723 - 375524 - | FMN reductase USA300HOU_0343 376819 - 376911 + | hypothetical protein USA300HOU_0344 377025 - 378026 + | alkanal monooxygenase (FMN-linked) USA300HOU_0345 378060 - 378392 + | glycine cleavage system H-protein USA300HOU_0346 378393 - 379193 + | hypothetical protein USA300HOU_0347 379183 - 380127 + | Sir2 silent information regulator family NAD-dependent deacetylase lplA1 380105 - 381127 + | lipoate--protein ligase A USA300HOU_0349 381442 - 382467 + | dehydrogenase USA300HOU_0350 383906 - 382560 - | ascorbate-specific PTS system enzyme IIC USA300HOU_0351 384214 - 383921 - | PTS family porter component IIB USA300HOU_0352 384650 - 384207 - | PTS family porter component IIA USA300HOU_0353 386610 - 384655 - | transcription antiterminator USA300HOU_0354 386822 - 387241 + | transcriptional regulator TERM 366 387251 - 387272 + F 100 -9.5 -4.39414 | opp_overlap 387250 CAATAAATGATAAGT GTGACTGGT AGAA ATCAGTCAC TTTGTCTTTAATATT USA300HOU_0355 387348 - 388703 + | MATE family multi-antimicrobial extrusion protein TERM 367 388712 - 388748 + F 78 -6.6 -4.56775 | overlap 388714 AGGTTAAATATTTCG TCCACTTCTGGCTGAG TATAT TTCGGTCGGAAGTGTA TTTTTCGAAAAAAAT TERM 368 388714 - 388746 + F 86 -9.2 -3.90048 | overlap 388712 GTTAAATATTTCGTC CACTTCTGGCTGAG TATAT TTCGGTCGGAAGTG TATTTTTCGAAAAAA USA300HOU_0356 388807 - 389247 + | hypothetical protein glpT 390688 - 389330 - | MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter TERM 369 389514 - 389530 + g 88 -7.9 -5.09895 | opp_overlap 389514, overlap 389512 AATCCTGTTAATCCA GCTGCTG TGC CAGCTGC TTTTTTAGGTACATA USA300HOU_0358 390996 - 391922 + | lactoylglutathione lyase USA300HOU_0359 391936 - 392997 + | alkanal monooxygenase USA300HOU_0360 393011 - 393577 + | FMN reductase TERM 370 393591 - 393628 + TF 74 -6.4 -4.43681 | gap 1, opp_overlap 393591 AAAGTATAAAAATAA GACGCTCGGCACACTAA ATTTG TAAGTGT-TTGAGCGTC TTTTCATATTAACTA USA300HOU_0361 394632 - 393637 - | hypothetical protein TERM 371 394818 - 394802 - gH 81 -8 -4.20367 | overlap 394775 GGCCCCAACAAAGAA GCTGAC GAAAA GTCAGC TTACAATAATGTGCA USA300HOU_0362 394631 - 395026 + | hypothetical protein USA300HOU_0363 395106 - 395651 + | N-acetyltransferase TERM 372 395665 - 395703 + F 74 -6.8 -4.32046 | opp_overlap 395670, overlap 395670 395698 GACAAATTAGACTTA CAAAAGAGTGATGACATT TAA AATGGCAGCGCTCTTTTA TTTAATTTTTAAAAA TERM 373 395670 - 395698 + F 83 -6.7 -5.10516 | opp_overlap 395670, overlap 395665 ATTAGACTTACAAAA GAGTGATGACATT TAA AATGGCAGCGCTC TTTTATTTAATTTTT USA300HOU_0364 395919 - 396773 + | lipoprotein USA300HOU_0365 396770 - 397999 + | iron (Fe2+)-dependent Dyp family peroxidase USA300HOU_0366 397980 - 399692 + | OFeT family oxidase-dependent iron (Fe2+) transporter TERM 374 399718 - 399690 - T 100 -9 -5.22039 | opp_overlap 399697, overlap 399697 TTTAAATTTAAAAAA TAAAAAACAGGC CGAGT GCCTGTTTTTTT GTTGCTATATTGGAA TERM 375 399697 - 399711 + T 95 -7.1 -5.85737 | opp_overlap 399697 399690 TTAAAAAATAAAAAA CAGGC CGAGT GCCTG TTTTTTTGTTGCTAT TERM 376 399711 - 399697 - T 95 -7.1 -6.04324 | opp_overlap 399697, overlap 399690 TTAAAAAATAAAAAA CAGGC CGAGT GCCTG TTTTTTTGTTGCTAT USA300HOU_0367 400440 - 399784 - | Tat family twin arginine targeting transporter TatC TERM 377 400309 - 400285 - G 73 -3.6 -5.04868 | TGAAATGAAACAAAA CGCGATGA AAAATATAA TCATCACG TATATTTGTATCATT USA300HOU_0368 400717 - 400502 - | Tat family twin arginine targeting transporter USA300HOU_0369 401215 - 400826 - | hypothetical protein TERM 378 401619 - 401630 + G 70 -2.2 -5.29445 | GCATTTTCAATGAAA CGGT GGAA ACTG TTTTTATTATTGAGG USA300HOU_0370 401456 - 401659 + | transcriptional regulator USA300HOU_0371 401656 - 402369 + | hypothetical protein USA300HOU_0372 402394 - 403236 + | ABC transporter ATP-binding protein USA300HOU_0373 403236 - 403865 + | hypothetical protein TERM 379 403906 - 403941 + T 71 -4.9 -4.80882 | gap 1 TTGAAATAATATTTA GAGCAGGTGATAAATC TTTAC GATT-GTCATCTGTTC TTTTTGGTGTGGAAT USA300HOU_0374 405365 - 404232 - | hypothetical protein TERM 380 404287 - 404273 - G 70 -4.2 -4.65933 | GATTTTTAAAATAAA TCAGCA TGA TGCAGA AGGTTGCAACTGATA USA300HOU_0375 405904 - 407085 + | acetyl-CoA C-acetyltransferase TERM 381 407140 - 407089 - T 72 -6.9 -4.18213 | gap 1, opp_overlap 407094, overlap 407094 AAGTATAAATAATAA GAAAACAGGTTATCACAACA-GTA TTAAT TACATGTTGGCATAACCTGTTTTT ATTTGTTTATGGATT TERM 382 407135 - 407094 - T 83 -6.8 -5.04082 | gap 1, opp_overlap 407094, overlap 407089 TAAATAATAAGAAAA CAGGTTATCACAACA-GTA TTAAT TACATGTTGGCATAACCTG TTTTTATTTGTTTAT TERM 383 407094 - 407135 + T 90 -6.8 -5.56573 | gap 1, opp_overlap 407094 407089 TAAATAATAAGAAAA CAGGTTATCACAACA-GTA TTAAT TACATGTTGGCATAACCTG TTTTTATTTGTTTAT USA300HOU_0376 407920 - 407168 - | hypothetical protein metE 410191 - 407963 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 384 408564 - 408586 + g 71 -6.4 -4.21142 | AGAATTGTTACAGGT CCAGTTAA CATACCT TTAACTGG TTTATCTGTTAAGCT TERM 385 410154 - 410168 + g 71 -6.4 -4.10188 | CTTTTTCTACCTAAT CTTGGG AAT CCTAAG TTTGATGTTTTAATT USA300HOU_0378 412029 - 410188 - | bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein TERM 386 411129 - 411153 + gr 76 -3.5 -5.37345 | GAGATGGATTGAAAA GTGCTTTCGTT GGT ATCGGAATCAC TTTTTTGTCATTAAC USA300HOU_0379 413158 - 411998 - | bifunctional cystathionine gamma-lyase/gamma-synthase TERM 387 412303 - 412277 - GR 81 -8 -4.08887 | opp_overlap 412277 412285 ATCAGCTAAACGAAA GCCAATAACGGC ACC GCCATTTTTAGC TTGTTCTAAATGAGC TERM 388 412935 - 412912 - GR 81 -7.5 -4.35926 | overlap 412926 ATTTGAAAGTCAAAA GTACTGCTG AAATAG CAGCAATAC CTGATGCAAAAGCAA USA300HOU_0380 414258 - 413155 - | bifunctional cystathionine gamma-lyase/gamma-synthase TERM 389 414292 - 414338 + H 91 -10.9 -3.82202 | opp_overlap 414292 414332 GAAAAAATAAAAAAA GCTTCCGTCCTTCGTACCCGA ATGAA TCGGATAAAAAGGACGAAAGC TTATGTTTCGCGGTA TERM 390 414338 - 414292 - H 100 -17.5 -6.28401 | opp_overlap 414292, overlap 414332 GAAAAAATAAAAAAA GCTTCCGTCCTTCGTACCCGA ATGAA TCGGATAAAAAGGACGAAAGC TTATGTTTCGCGGTA TERM 391 415584 - 415563 - g 70 -2.3 -5.32565 | gap 1, overlap 415575 TAATGAATTAAAAAA TGTTT-CGTC AAA GTCGGAAACA GACAAAGTAGATATA USA300HOU_0381 414922 - 415767 + | ParB family partitioning protein USA300HOU_0382 415924 - 416805 + | MscS family small conductance mechanosensitive ion channel protein USA300HOU_0383 416835 - 417038 + | hypothetical protein USA300HOU_0384 417050 - 418147 + | translation-associated GTPase TERM 392 418187 - 418210 + T 71 -6 -4.50058 | opp_overlap 418187, overlap 418182 AGTATATATGTAGAA GAGGCGGA ATCAATTG TTCGCCTC TTTTAATTATGCGTA USA300HOU_0385 418424 - 418233 - | hypothetical protein USA300HOU_0386 418677 - 418408 - | hypothetical protein rpsF 418668 - 418964 + | 30S ribosomal protein S6 TERM 393 419452 - 419431 - g 79 -9.5 -3.4082 | GAAACAATCTGATAA TCCATTTGC AAAT GCAAACGGA CCGATTGATATAAGT ssb1 418985 - 419488 + | single-stranded DNA-binding protein TERM 394 419679 - 419660 - g 73 -8.6 -3.32844 | opp_overlap 419660 CGTTTTATCTCAGAA CGCGGTAA AATT TTACCACG TCGTGTAACTGGTAC rpsR 419540 - 419782 + | 30S ribosomal protein S18 TERM 395 419801 - 419826 + T 100 -11.1 -5.28983 | opp_overlap 419802, overlap 419802 ATAATTTATTGTCAA ACCCCGTAGGC ATAG GCTTACGGGGC TTTTTGTGTTTTGGG TERM 396 419802 - 419825 + T 100 -14.6 -3.75763 | opp_overlap 419802, overlap 419801 TAATTTATTGTCAAA CCCCGTAGGC ATAG GCTTACGGGG CTTTTTGTGTTTTGG TERM 397 419825 - 419802 - T 100 -12.4 -3.58269 | opp_overlap 419802 419801 TAATTTATTGTCAAA CCCCGTAGGC ATAG GCTTACGGGG CTTTTTGTGTTTTGG TERM 398 419946 - 419983 + T 79 -5.7 -5.10461 | opp_overlap 419949, overlap 419949 419952 TTTAGATGCATAAAA AAAGAACTACGCATTTT AAAT AAAATGCATAGCTCTTC TTTTTCTTGCATACG TERM 399 419980 - 419949 - T 100 -11.8 -5.65177 | opp_overlap 419946 419949 419952 AGATGCATAAAAAAA GAACTACGCATTTT AAAT AAAATGCATAGCTC TTCTTTTTCTTGCAT TERM 400 419949 - 419980 + T 81 -7.4 -4.64495 | opp_overlap 419949, overlap 419946 419952 AGATGCATAAAAAAA GAACTACGCATTTT AAAT AAAATGCATAGCTC TTCTTTTTCTTGCAT USA300HOU_0390 421022 - 420048 - | hypothetical protein TERM 401 420682 - 420699 + g 70 -4.2 -4.80656 | TCATCTATTATTTTA TAACCA TCTTCT TGGTTA TTTTCTGTTATTAGT USA300HOU_0392 421932 - 422543 + | enterotoxin TERM 402 422589 - 422620 + T 100 -11 -4.3953 | opp_overlap 422594, overlap 422593 TATCGCTAATACTTT GAAAGTTAGGTATC TAAA GGTGCCTAGCTTTC TTTGTTATGATTAGC TERM 403 422593 - 422616 + T 75 -6 -4.7458 | opp_overlap 422594, overlap 422589 GCTAATACTTTGAAA GTTAGGTATC TAAA GGTGCCTAGC TTTCTTTGTTATGAT USA300HOU_0393 422759 - 422640 - | hypothetical protein USA300HOU_0394 422912 - 423280 + | hypothetical protein USA300HOU_0395 423461 - 424033 + | hypothetical protein USA300HOU_0396 424434 - 424171 - | hypothetical protein USA300HOU_0397 424734 - 424985 + | hypothetical protein TERM 404 425010 - 424994 - T 95 -6.7 -6.01369 | TAAATAATAAAAAAA TTCAATT GGA AATTGAA ATAAAGATGGCATTC TERM 405 425016 - 425035 + T 82 -4.3 -5.65927 | opp_overlap 425016 GGAAATTGAAATAAA GATGGCA TTCAGT TGTCATC TTTTTTATTTGCGTG USA300HOU_0398 425233 - 425024 - | hypothetical protein TERM 406 425192 - 425169 - G 95 -6 -6.02919 | TGACAAATAAAAAAA GGATGACG TTGGGTTG CGCCATCC AGGAGTATTATGTTC TERM 407 425231 - 425220 - G 70 -4.4 -4.70583 | opp_overlap 425220, overlap 425215 425223 TTCATGAATATAAAA GACT GTGT AGTC ATTTAAGAACTACAC USA300HOU_0399 425411 - 425992 + | phosphoglycerate mutase USA300HOU_0400 426441 - 426058 - | hypothetical protein TERM 408 426588 - 426558 - R 100 -13.4 -4.90013 | TAAGGCAATTAAAAA GGCATCAAACAGTA ATA TGCTGCTTGATGCC CAAATGATGACTTTA USA300HOU_0401 427322 - 426696 - | hypothetical protein USA300HOU_0402 427688 - 427395 - | hypothetical protein TERM 409 427749 - 427717 - R 90 -6.5 -5.60993 | GTCGGGATAAAAAAA TAACAGCATCTTA ACAAATG TAAGATACTGTCA GTGAAATGAATGAAA ahpF 429290 - 427767 - | alkyl hydroperoxide reductase subunit F TERM 410 428965 - 428981 + g 76 -3.7 -5.30616 | overlap 428967 TCTAATTTTTTAATT TGGTCAA TGA TTGACTG TTTTTCTTTAGGTGC TERM 411 428967 - 428979 + g 74 -6.3 -4.2793 | overlap 428965 TAATTTTTTAATTTG GTCAA TGA TTGAC TGTTTTTCTTTAGGT ahpC1 429875 - 429306 - | alkyl hydroperoxide reductase subunit C USA300HOU_0405 430316 - 431122 + | FMN reductase TERM 412 431188 - 431136 - T 88 -8.8 -4.43815 | gap 3, opp_overlap 431137 431139, overlap 431139 AGCAAGATACCAAAA TAACCCGCCCCCCTCTAGCT-TA AAATGATAAG TATAGCTAGAGGGG-GCGGG-TA TTTCTTGCAATGAAT TERM 413 431137 - 431188 + T 95 -10.4 -4.18488 | opp_overlap 431136 431139, overlap 431139 GCAAGATACCAAAAT AACCCGCCCCCCTCTAGCT-TA AAATGATAAG TATAGCTAGAGGGG-GCGGGTA TTTCTTGCAATGAAT TERM 414 431186 - 431139 - T 100 -13 -4.31813 | opp_overlap 431137 431139, overlap 431136 AAGATACCAAAATAA CCCGCCCCCCTCTAGCT-TA AAATGATAAG TATAGCTAGAGGGG-GCGGG TATTTCTTGCAATGA TERM 415 431139 - 431186 + T 100 -13 -3.69068 | opp_overlap 431139 431136, overlap 431137 AAGATACCAAAATAA CCCGCCCCCCTCTAGCT-TA AAATGATAAG TATAGCTAGAGGGG-GCGGG TATTTCTTGCAATGA USA300HOU_0406 432591 - 431203 - | DAACS family dicarboxylate/amino acid:sodium or proton symporter USA300HOU_0408 434524 - 433568 - | hypothetical protein TERM 416 434282 - 434296 + g 85 -4.3 -5.69262 | opp_overlap 434282 ATCGTTTTTGACAAT GACTT GCAGG AAGTC TTTTTCTTTTTCTAA USA300HOU_0409 435304 - 434642 - | hypothetical protein TERM 417 435418 - 435391 - R 100 -9.3 -5.28826 | opp_overlap 435391 AAATGGTATAAAAAA CTGTACTATCT TAAATT AGACAGTACAG TAATCTCATTTTGAA USA300HOU_0410 435854 - 435447 - | hypothetical protein xprT 436367 - 436945 + | xanthine phosphoribosyltransferase TERM 418 437083 - 437097 + G 71 -5.7 -4.56775 | GTAGATATATTTATG TGTGG GGTTG CCACA TTTTTACAAGCCAAT pbuX 436945 - 438213 + | NCS2 family nucleobase:cation symporter-2 guaB 438251 - 439717 + | IMP dehydrogenase TERM 419 440915 - 440931 + G 73 -8.7 -3.22858 | overlap 440913 440915 TGGAGACAACCATTC CCAGGAC CTG GTCTTGG TATTCGTGTACTTGG TERM 420 441063 - 441036 - g 74 -6.4 -4.32857 | opp_overlap 441054 GTCTTGAAAGAGAAA TTTGGCAATACT TCAC AGTGTTACCAAA CATTCAATCAGTAGG guaA 439742 - 441283 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 421 441323 - 441294 - T 72 -7.9 -3.66274 | opp_overlap 441299, overlap 441299 AATAATTATATATAA TAAAACCACCTGT TTGC ACGGGTGGTTTTT AATTTGAGTAGTTGG TERM 422 441318 - 441299 - T 88 -7.8 -4.87592 | opp_overlap 441299, overlap 441294 TTATATATAATAAAA CCACCTGT TTGC ACGGGTGG TTTTTAATTTGAGTA TERM 423 441299 - 441318 + T 100 -10 -5.00138 | opp_overlap 441294 441299 TTATATATAATAAAA CCACCTGT TTGC ACGGGTGG TTTTTAATTTGAGTA USA300HOU_0415 441932 - 441396 - | hypothetical protein TERM 424 442226 - 442199 - R 100 -9.2 -5.72616 | overlap 442201 442211 ATTTATATAAAAAAA GAGGCCAGATGA CGTA TCATCTGACCTT CAGCTAAAACGCTGA TERM 425 442224 - 442201 - R 100 -11.8 -4.50122 | overlap 442199 442211 TTATATAAAAAAAGA GGCCAGATGA CGTA TCATCTGACC TTCAGCTAAAACGCT USA300HOU_0416 443029 - 442325 - | hypothetical protein USA300HOU_0417 443700 - 443428 - | transposase USA300HOU_0419 444113 - 443961 - | hypothetical protein TERM 426 444532 - 444507 - R 76 -7.6 -3.9941 | opp_overlap 444502, overlap 444502 TTTTCTATAAGGAAA CAGAGGCAAC GCTACT GTCACCTCTG CTTGAAATAATTAGG USA300HOU_0420 444996 - 444637 - | hypothetical protein USA300HOU_0421 445860 - 445015 - | hypothetical protein set3 446332 - 447012 + | superantigen-like protein TERM 427 447067 - 447097 + F 100 -12 -5.40072 | opp_overlap 447066 447070 TTATGGAAATATATG GAAGTTAAGCGACG TAC TGTTGCTTAGCTTC TTTTTTTGAGGGGAA TERM 428 447285 - 447265 - f 75 -5.5 -4.69656 | AATTACGTAATAAAA CAATCTAAT TAT AATAGATTG GAGCATACAACTATG set1 447298 - 447993 + | superantigen-like protein TERM 429 448035 - 448068 + F 91 -9 -4.81083 | opp_overlap 448035 448038 TGAAATTGAAATAGA GAGGTTAAGTGACG ATCAAA CGTTGCTTAACTTC TTTTTAATGCTTAAA set18 448284 - 449342 + | superantigen-like protein USA300HOU_0425 449461 - 449598 + | hypothetical protein set19 449707 - 450633 + | superantigen-like protein set20 450982 - 451701 + | superantigen-like protein 5 TERM 430 451744 - 451773 + F 100 -10.1 -5.47159 | opp_overlap 451758 TATGGATAGTATAGA GGAGTTAGGCAAC ATAA GTTGCTTAGCTTC TTTTTTGTGTTGGAG set21 452147 - 452842 + | superantigen-like protein TERM 431 452873 - 452903 + F 100 -12.8 -5.92399 | opp_overlap 452876 452881 ACTAGTAATTGTAGG GAAGTTAAGCGATA ACA TATTGCTTAGCTTC TTTTTTATTTTGTTA set22 453263 - 453958 + | superantigen-like protein 7 TERM 432 454849 - 454839 - g 73 -4 -5.14563 | CTGTTGATTAAAAAA TACA AAC TGTA TGAAGGGTCAGCTGA set23 454302 - 455000 + | superantigen-like protein set24 455380 - 456078 + | superantigen-like protein set25 456444 - 457127 + | superantigen-like protein TERM 433 458621 - 458603 - g 84 -6.7 -5.1101 | TTAGTATTTAAAAAA TGTCGCC AACAA GACGACA ACGTACTATTTATCG hsdM1 457391 - 458947 + | type I site-specific deoxyribonuclease methyltransferase subunit hsdS1 458940 - 460151 + | type I site-specific deoxyribonuclease specificity subunit TERM 434 460248 - 460269 + F 100 -8.7 -5.36441 | opp_overlap 460248 CGAACATTAAATTTA GGCACTGTG AAAG CGCAGTGTC TTTTTTGTGTCGAAA TERM 435 460572 - 460548 - g 82 -4.4 -5.40004 | opp_overlap 460550, overlap 460551 TATGAAATTAAAAAA TATTGCTAAA GCAAG TTTAGCACTA GGGATTTTAACAACA set 460534 - 461211 + | superantigen-like protein USA300HOU_0436 461233 - 462741 + | hypothetical protein TERM 436 462810 - 462752 - T 72 -4.2 -5.03713 | gap 2, opp_overlap 462752 AATAATTAAATAAAA CAGCTTAATGATGTAATGAAATTAGTGA GTTAA TCACTGACTTC-T-ACGTCATTGAGCTG TTTTTTGTGCTTTGT TERM 437 462752 - 462810 + T 100 -8.6 -5.43621 | gap 2, opp_overlap 462752 AATAATTAAATAAAA CAGCTTAATGATGTAATGAAATTAGTGA GTTAA TCACTGACTTC-T-ACGTCATTGAGCTG TTTTTTGTGCTTTGT TERM 438 462818 - 462834 + T 84 -9.5 -3.8253 | TTGAGCTGTTTTTTG TGCTTTG TTA CAAAGCA TTATTGAATTTATTT USA300HOU_0437 463152 - 462844 - | hypothetical protein lpl11 463490 - 464293 + | lipoprotein USA300HOU_0439 464324 - 465124 + | hypothetical protein TERM 439 465961 - 465946 - f 74 -3.3 -5.47964 | ACAAAATAACAAAAA GTTGA TATTAG TCAAC AAAAGCAAATATTGA TERM 440 466430 - 466412 - g 81 -6.2 -4.99134 | opp_overlap 466415, overlap 466424 AGTTGAAATGAAAAA TAATAAAA TCA TTTTATTA GATAAAGTAGAAGAT lpl7 465999 - 466799 + | hypothetical protein TERM 441 467237 - 467219 - g 70 -4 -4.99134 | opp_overlap 467219, overlap 467227 467231 AGTTGAAATGAAAAA TAATAAAA TTA TCTTATTA GACAAGGTAGAAGAT USA300HOU_0442 466818 - 467588 + | lipoprotein TERM 442 468105 - 468091 - g 95 -3.6 -6.14618 | opp_overlap 468095, overlap 468095 468097 GAGAAAATAAAAAAA GAAATT GAA AACTTC AAGTTTTTTGTGCAA TERM 443 468107 - 468095 - g 80 -4.9 -5.36181 | opp_overlap 468095, overlap 468091 468097 AAATAAAAAAAGAAA TTGAA AAC TTCAA GTTTTTTGTGCAATA USA300HOU_0443 467620 - 468411 + | lipoprotein USA300HOU_0444 468481 - 469257 + | hypothetical protein TERM 444 469587 - 469572 - g 72 -4.8 -4.66418 | overlap 469581 CAAAAGAAGAACAAA TCAAAA AGAG TTTTGA GAAAACATTAGATAT TERM 445 469879 - 469861 - g 70 -4 -4.99134 | opp_overlap 469861, overlap 469869 AGTTGAAATGAAAAA TAATAAAA TTA TCTTATTA GATAAAGTAGAAGAT TERM 446 469884 - 469869 - g 77 -4.8 -5.16681 | opp_overlap 469861, overlap 469861 TGAAAAATAATAAAA TTATCT TATT AGATAA AGTAGAAGATACAAA USA300HOU_0445 469433 - 470248 + | hypothetical protein USA300HOU_0446 470267 - 471052 + | lipoprotein USA300HOU_0447 471232 - 472047 + | lipoprotein TERM 447 472393 - 472372 - g 77 -5.9 -4.66938 | ATTTTCAAGACAAAA TGTTACCAA TGCT TTGGAAACA GTTAAAGATGGATAT USA300HOU_0448 472037 - 473365 + | hypothetical protein USA300HOU_0449 473362 - 473685 + | hypothetical protein USA300HOU_0450 473704 - 474018 + | hypothetical protein USA300HOU_0451 474502 - 474308 - | hypothetical protein cobW1 474687 - 475889 + | cobalamin (vitamin B12) biosynthesis protein USA300HOU_0453 476135 - 475992 - | hypothetical protein TERM 448 476044 - 476071 + g 100 -9.2 -5.20783 | TGCATTTTATCCATA GGGCTAGGACAT GTAT GTGTCTTAGTCC TTTTTATATTTACGT USA300HOU_0454 476158 - 476286 + | hypothetical protein TERM 449 476516 - 476491 - T 91 -9.7 -4.21322 | overlap 476486 TCAACACAAAGCAAA GCCACCATCCC TATT GGTATAGTGGC CTGAGAATTTTAAGT USA300HOU_0455 476859 - 476794 - | hypothetical protein USA300HOU_0456 476956 - 476891 - | hypothetical protein TERM 450 477316 - 477353 + H 75 -9.2 -2.91274 | opp_overlap 477316, overlap 477318 CACGCTTAAAGAGAA CACTGCAACAAGGTAT ATCAAC GTACCGTGATGCAGTG TCTAGTTAAACTGAA TERM 451 477353 - 477316 - H 77 -8.5 -3.82202 | opp_overlap 477316 477318 CACGCTTAAAGAGAA CACTGCAACAAGGTA TATCAACG TACCGTGATGCAGTG TCTAGTTAAACTGAA TERM 452 477370 - 477419 + H 95 -7.4 -5.69262 | opp_overlap 477370 477407 CTAGTTAAACTGAAA CCTGCAATAGTAAATTTTCTGC CATTAT GTACAGAATCTACTATTGTAGG TTTTTATTTTTATAC USA300HOU_0457 477477 - 478961 + | NADH dehydrogenase subunit 5 USA300HOU_0458 478974 - 481679 + | hypothetical protein USA300HOU_0459 481841 - 482203 + | hypothetical protein USA300HOU_0460 482848 - 482432 - | hypothetical protein USA300HOU_0461 482886 - 483560 + | hypothetical protein USA300HOU_0462 483597 - 484331 + | peptidase USA300HOU_0463 484509 - 484622 + | hypothetical protein TERM 453 486135 - 486168 + F 91 -4.8 -5.95539 | gap 2, opp_overlap 486135, overlap 486144 GTTAATATATAGAAG CATCTGA-C-ACACAA GTAT TTGTGTTGCTCAGGTG TTTTTTTGTTTGGAA USA300HOU_0464 490400 - 491242 + | ABC transporter ATP-binding protein TERM 454 491252 - 491290 + F 93 -10.5 -3.94877 | gap 1 AAATAAATTATATTG CGTCCTACAAGCA-AAGT TCAT GCTTATGTTTGTAGGGCG TTATTGTTGGAGAAT USA300HOU_0465 491574 - 492578 + | LysM family autolysin TERM 455 492753 - 492712 - T 75 -5.5 -4.8048 | gap 3, opp_overlap 492707 492712 TTTGTATATGAAAAA GGATTGGTCG-A-AT-GAAC TTCAT GTTCTATGTTCGACCAATCC TTTTCTGAATTAGTA TERM 456 492712 - 492753 + T 71 -6 -4.48221 | opp_overlap 492712, overlap 492707 TTTGTATATGAAAAA GGATTGGTCGAATGAA CTTCATGTTC TATGTTCGACCAATCC TTTTCTGAATTAGTA USA300HOU_0466 493032 - 492763 - | hypothetical protein USA300HOU_0467 493172 - 493576 + | hypothetical protein USA300HOU_0468 493566 - 494051 + | GNAT family acetyltransferase TERM 457 494191 - 494154 - T 75 -5.8 -4.82667 | TTACTATAGTAAAAA GCGACCTAGTGAACA-AT TGAC ATATATCCAC-AGGTCGC TTAACTTAAGTTATA USA300HOU_0469 495002 - 494220 - | hypothetical protein USA300HOU_0470 496117 - 494999 - | hypothetical protein gltC 497116 - 496232 - | glutamate synthase operon transcriptional regulator gltB1 497297 - 501796 + | glutamate synthase (NADPH), large subunit gltD 501814 - 503277 + | glutamate synthase subunit beta TERM 458 503672 - 503700 + F 100 -11.9 -5.7827 | opp_overlap 503668 503672 TCTATATATAATGAA GGTAAGTGCTCAA ATT TTGAGTATTTACC TTTTTTATTTGTCTT TERM 459 503769 - 503804 + F 91 -4.9 -5.86976 | gap 1 CATTGAGATTGGAAG GGCATTTGGCT-TGTG CAATA TACATAGCTAAATGTC TTTTTTGTTTTGTGA treP 504109 - 505536 + | PTS family trehalose (tre) porter component IIBC TERM 460 505550 - 505572 + F 70 -5.5 -4.27467 | AATAAAATAAAAAAG GGGCGTTCG TTATT TGGACGTCC TTTATTACGTTATAA amyA 505600 - 507240 + | alpha, alpha-phosphotrehalase USA300HOU_0476 508632 - 509156 + | GNAT family acetyltransferase TERM 461 510050 - 510026 - g 77 -5.7 -5.02074 | GCATCTTTTAAAAAA TACCATCAGTT TAT AACAGAAGGTA AAGAAGTGAATCGCC TERM 462 510401 - 510417 + G 71 -8.7 -3.04248 | opp_overlap 510395 510401 ACACTAAAAGCACAA GGAGTGA GTG TCGCTCC TGTTCAAAAATCTTC TERM 463 510483 - 510469 - g 88 -7.2 -4.93595 | ACAAAAATCTAAAAA TGCATT TTC AATGCA ACAAATTGCAAAAGT dnaZX 509249 - 510922 + | DNA-directed DNA polymerase III gamma and tau subunits USA300HOU_0478 511012 - 511329 + | hypothetical protein TERM 464 511386 - 511421 + G 74 -6.8 -4.30978 | opp_overlap 511385 511406 TAGCTTTATGAAATT GCCAGGCATTGGTC CAAAGACA GCCCAACGTCTGGC TTTTCATACCTTAGA recR 511336 - 511932 + | recombination protein RecR TERM 465 511970 - 512007 + F 100 -12.3 -2.6891 | opp_overlap 511973 511978 511980, overlap 511978 ATTTTAATACTATAG TAAGAAAAGTCACAGTG TAAT CATTGTGGCTTTTTTTA TGGTGTGGTGTGATG TERM 466 511978 - 511999 + F 95 -7.3 -5.69473 | opp_overlap 511978 511973 511980, overlap 511970 ACTATAGTAAGAAAA GTCACAGTG TAAT CATTGTGGC TTTTTTTATGGTGTG TERM 467 512744 - 512728 - f 79 -5.9 -5.09426 | overlap 512729 GTTAATTCCAAAAAA CGTAACT ATA AGTTACA AACATTATTTAGTAT TERM 468 512990 - 512969 - f 83 -10.3 -3.25079 | overlap 512967 TAATACCGGATAATA TTTTGAACC GCAT GGTTCAAAA GTGAAAGACGGTCTT TERM 469 513421 - 513403 - f 71 -8.8 -2.75963 | overlap 513402 AGTCTGATGTGAAAG CCCACGGC TCA ACCGTGGA GGGTCATTGGAAACT TERM 470 514401 - 514428 + F 73 -3.7 -5.27477 | gap 1, overlap 514396 514394 514402 ACATATTGTATTCAG T-TTTGAATGTT TATTT AACATTCAAATA TTTTTTGGTTAAAGT TERM 471 514402 - 514426 + F 84 -8.8 -4.26777 | overlap 514396 514394 514401 CATATTGTATTCAGT TTTGAATGTT TATTT AACATTCAAA TATTTTTTGGTTAAA TERM 472 514622 - 514595 - f 70 -5.6 -4.28115 | ATTCATAAGAAATAA TCGCTAGTGTTC GAAA GAACACTCACAA GATTAATAACGCGTT TERM 473 514998 - 514979 - f 90 -10.8 -3.66803 | opp_overlap 514978 514977 TGGGAAGAGCCCAAA CCAACAAG CTTG CTTGTTGG GGTTGTAGGACACTC TERM 474 517840 - 517855 + F 100 -9 -5.76633 | GCGATGAGCCGCATT GAGACC GCAA GGTCTC TTTTTTTATGTCTAA TERM 475 518097 - 518112 + F 100 -9 -5.76633 | GTTGCCAGGCAAGTT GAGACC GTGA GGTCTC TTTTTTTATGTCTAA TERM 476 518515 - 518474 - f 87 -11.1 -3.4968 | opp_overlap 518474, overlap 518470 518469 ATTATAAAAAGTGAA CAGCAGTAAGATAGTTTTT AATC ATAAATCATCTTACTGCTG TTTTTAGATTTTATG TERM 477 518474 - 518515 + F 100 -11.1 -4.89729 | opp_overlap 518474 518470 518469 ATTATAAAAAGTGAA CAGCAGTAAGATAGTTTTT AATC ATAAATCATCTTACTGCTG TTTTTAGATTTTATG USA300HOU_0480 518695 - 520032 + | lysine decarboxylase TERM 478 520408 - 520396 - g 71 -6.3 -4.183 | CGAATTTGCAATAAA TGGAT TAT ATCCA GACTTGACGATTTAT tmk 520025 - 520651 + | dTMP kinase USA300HOU_0482 520679 - 521008 + | hypothetical protein TERM 479 520986 - 521002 + F 70 -5.2 -4.53636 | TATTTGTTATGCCAG TTGATG CATTC CATCAA TTTTAATTCTATAAT TERM 480 521462 - 521441 - g 72 -5.9 -4.34223 | opp_overlap 521440, overlap 521444 AATGCAATTAAGAAA GAACAAGTT GAAC AACTTGTGC GTCATATGAATCAAC TERM 481 521459 - 521444 - g 72 -6.2 -4.27694 | opp_overlap 521440, overlap 521441 GCAATTAAGAAAGAA CAAGTT GAAC AACTTG TGCGTCATATGAATC TERM 482 521924 - 521903 - g 91 -4.5 -5.93252 | GCTAAAAATAAAAAA CTGCAAT CTTTAACT ATTGCAG CTGTGAATGGTTTCT TERM 483 522015 - 522004 - g 71 -3 -5.09895 | TAGTGATTTAAAAAA TGAT ATTG ATCA ATATGCGCAAAAGTT holB 521222 - 522148 + | DNA-directed DNA polymerase III delta' subunit USA300HOU_0484 522149 - 522952 + | hypothetical protein USA300HOU_0485 522999 - 523316 + | DNA replication intiation control protein YabA TERM 484 523368 - 523392 + G 73 -7.2 -4.06361 | opp_overlap 523368 523380 ATATGGTTTGGATAA GTCTGAGACA ATGCA TGTTTCAGGC TTTAATTGTGTATAA USA300HOU_0486 523309 - 523407 + | hypothetical protein TERM 485 523519 - 523507 - f 72 -4.9 -4.87318 | GTTAAAAGTCAAAAA TACAT CGA ATGTA GTTAGGCATATAATA TERM 486 523750 - 523760 + G 71 -6.8 -4.16033 | TATGTTCAGGCAATG GGGT GAT ACCC TTGTTATTGTTTGCG TERM 487 523940 - 523898 - g 76 -6.7 -4.62783 | gap 1, opp_overlap 523898 CATGGATTTGAAAAA CGTTACTAAAGTAT-TTA AACCTTCA CAATATACTTTAGTAACG TGTAATCCGCCTTAT USA300HOU_0487 523590 - 524315 + | hypothetical protein USA300HOU_0488 524308 - 524556 + | hypothetical protein USA300HOU_0489 524558 - 525397 + | tetrapyrrole (corrin/porphyrin) methyltransferase TERM 488 526159 - 526145 - g 87 -10 -4.08216 | TTATTGGTGGCAAAA GTCCAG ATT CTGGAC ACGAAGTTGAACTAG metS 525682 - 527655 + | methionyl-tRNA synthetase USA300HOU_0491 527686 - 528459 + | TatD family deoxyribonuclease USA300HOU_0492 528626 - 529162 + | hypothetical protein ksgA 529173 - 530066 + | dimethyladenosine transferase USA300HOU_0494 530166 - 530429 + | hypothetical protein TERM 489 530493 - 530519 + F 100 -8.8 -5.27335 | TTATGATAATTATTT GAGTGTTGGGCA TTA TGTTCAATACTC TTTTTATTTACAAAA TERM 490 533247 - 533277 + F 100 -12.7 -5.75822 | TAAGTTGATTTGATA CTGTCGATAAAGC ATAAA GCTTTGTCGGCAG TTTTTTTAGTTTGTA TERM 491 536239 - 536223 - g 75 -5.1 -4.85618 | overlap 536224 AAACAATTAAGAAAA TCTGGTA AAG TACCAGC AGTAGTATACGGTTA TERM 492 536238 - 536224 - g 75 -8.6 -3.48931 | overlap 536223 AACAATTAAGAAAAT CTGGTA AAG TACCAG CAGTAGTATACGGTT TERM 493 536446 - 536410 - g 74 -6.7 -4.33653 | overlap 536413 CACTTAAAAACCAAA TTACTCACATTGACTTC TTA GCAATCAATATGAGTGA AGAACGTACTGTTGA rplY 536154 - 536807 + | 50S ribosomal protein L25/general stress protein Ctc TERM 494 536850 - 536881 + F 100 -10.3 -5.21506 | opp_overlap 536850 536870, overlap 536847 TACTTTGTTTAACAA GCACTGTGCTTAT TTTAAT ATAAGCATGGTGC TTTTTGTGTTATTAT TERM 495 536942 - 536900 - f 71 -6.6 -3.96148 | opp_overlap 536896 536902, overlap 536901 TTGTGTTATTATAAA GCTTAATTAAACTTTATTAC TTT GTACTAAAGTTTAATTAATT TTAGTGAGTAAAAGA TERM 496 536941 - 536901 - f 77 -10.1 -2.97475 | opp_overlap 536896 536902, overlap 536900 TGTGTTATTATAAAG CTTAATTAAACTTTATTAC TTT GTACTAAAGTTTAATTAAT TTTAGTGAGTAAAAG TERM 497 536902 - 536940 + F 100 -13.6 -4.2828 | opp_overlap 536901 536900, overlap 536896 GTGTTATTATAAAGC TTAATTAAACTTTATTAC TTT GTACTAAAGTTTAATTAA TTTTAGTGAGTAAAA pth 537118 - 537690 + | peptidyl-tRNA hydrolase TERM 498 539175 - 539155 - g 76 -4.1 -5.07107 | opp_overlap 539160 CAAATGCTGAAAAAA TTAAGTCTT ACC AAGATTTAA ATGTGGGAGATTATA mfd 537690 - 541196 + | transcription-repair coupling factor USA300HOU_0498 541186 - 542712 + | MOP superfamily PST family polysaccharide transporter USA300HOU_0499 542712 - 543905 + | tetrapyrrole methyltransferase USA300HOU_0500 543902 - 544165 + | RNA-binding S4 domain-containing heat shock protein USA300HOU_0501 544183 - 544575 + | septum formation initiator USA300HOU_0502 544680 - 545081 + | hypothetical protein TERM 499 545165 - 545194 + F 81 -6.5 -5.02323 | opp_overlap 545162 545167, overlap 545149 545167 AGCGTTAGACAATCT AAGACTGTTTCTT AAAT AAGGAGCAGTCTC TTTTATTTGTAATGA TERM 500 545167 - 545192 + F 88 -9.1 -4.12652 | opp_overlap 545162 545167, overlap 545149 545165 CGTTAGACAATCTAA GACTGTTTCTT AAAT AAGGAGCAGTC TCTTTTATTTGTAAT USA300HOU_0503 545261 - 546556 + | hypothetical protein hpt 546543 - 547100 + | hypoxanthine phosphoribosyltransferase TERM 501 547581 - 547563 - g 83 -6.1 -5.0925 | opp_overlap 547562 TGGTAAAACGAAAAA TGATGAA GACTA TTCATCA ACTATTTTATATAAC TERM 502 547690 - 547678 - g 87 -6.3 -5.40014 | AAAGAAGAAGAAAAA CAAAG TGT CTTTG TGAGTATACTTTCAA ftsH 547357 - 549450 + | cell division protein FtsH TERM 503 549464 - 549500 + F 100 -16.9 -4.72556 | opp_overlap 549460 AATCGATTATATTCA GTACCTCTTTCTATGAT AAA GTTATAGAAAGAGGTAC TTTTATCGTTTTTGA USA300HOU_0506 549679 - 550560 + | heat shock protein Hsp33 cysK 550739 - 551671 + | cysteine synthase TERM 504 551718 - 551688 - f 70 -5.5 -4.19704 | opp_overlap 551688 TAATGTCATTTAAAA GAGTGAGTTATCT TTTTG AGATAACTTGCTC TTTTTTTCTACCATG TERM 505 551688 - 551718 + F 100 -10.6 -5.626 | opp_overlap 551688 TAATGTCATTTAAAA GAGTGAGTTATCTT TTT GAGATAACTTGCTC TTTTTTTCTACCATG sul 551887 - 552690 + | dihydropteroate synthase folB 552662 - 553033 + | dihydroneopterin aldolase TERM 506 555555 - 555587 + T 100 -12.1 -4.37199 | opp_overlap 555555 TGATTGTTAGTAAGA GCTCTCGTGTATACA ACA TGTGTATGCGAGGGC TTTCTTAATTATGGT TERM 507 556538 - 556522 - T 78 -9.5 -3.22475 | overlap 556525 TTCAGCGGTAGAATA CAACCTT GCC AAGGTTG GGGTCGCGGGTTCGA TERM 508 557023 - 557007 - T 79 -5.9 -5.09426 | overlap 557008 GTTAATTCCAAAAAA CGTAACT ATA AGTTACA AACATTATTTAGTAT TERM 509 557269 - 557248 - T 83 -10.3 -3.25079 | overlap 557246 TAATACCGGATAATA TTTTGAACC GCAT GGTTCAAAA GTGAAAGACGGTCTT TERM 510 557700 - 557682 - T 71 -8.8 -2.75963 | overlap 557681 AGTCTGATGTGAAAG CCCACGGC TCA ACCGTGGA GGGTCATTGGAAACT TERM 511 558919 - 558892 - T 70 -5.6 -4.28115 | ATTCATAAGAAATAA TCGCTAGTGTTC GAAA GAACACTCACAA GATTAATAACGCGTT TERM 512 559249 - 559230 - T 90 -10.8 -3.66803 | opp_overlap 559229 559228 CGGGAAGAGCCCAAA CCAACAAG CTTG CTTGTTGG GGTTGTAGGACACTC TERM 513 562091 - 562106 + T 100 -9 -6.06529 | GCGATGAGCCGCATT GAGACC GCAA GGTCTC TTTTTTTTATGTCTA TERM 514 562453 - 562494 + T 73 -6 -4.65584 | gap 1, opp_overlap 562453 TGTATAAATAGAGAA GAGCAGTAAGA-CGGTATC TAATT GAAAATGATCTTACTGCTC TTTTATATACTTTAT USA300HOU_0510 563971 - 562589 - | GntR family transcriptional regulator TERM 515 562812 - 562832 + g 73 -8.3 -3.56262 | overlap 562810 TGCATACCCGTTTCA GCACCTTGA ATA TCAAGCTGC TCTTTGTAAGGTTTC TERM 516 563269 - 563279 + g 80 -2.6 -5.75599 | GATGGGAAGGCGTTA TATA TAC TATA TTTTTTTGTGATTTA TERM 517 563906 - 563922 + g 70 -2.3 -5.25976 | opp_overlap 563909, overlap 563909 TTTATCGCCTTCTTT AAATTGA CCT TCAATTA TTTGTTTTTTTAATT USA300HOU_0511 564075 - 564962 + | pyridoxine biosynthesis protein USA300HOU_0512 564966 - 565526 + | glutamine amidotransferase subunit PdxT TERM 518 565584 - 565615 + G 85 -6.7 -5.36441 | opp_overlap 565579 565584 565587, overlap 565587 TTGTTGAGAAGAAAA TATCTCCTTCAAA CTTAGC TTTGGAGGAGTTA TTTTTTATGTCAAAA TERM 519 565615 - 565584 - g 70 -4.5 -4.77165 | opp_overlap 565584 565587, overlap 565579 565587 TTGTTGAGAAGAAAA TATCTCCTTCAAA CTTAGC TTTGGAGGAGTTA TTTTTTATGTCAAAA TERM 520 565587 - 565612 + G 86 -8.4 -4.77122 | opp_overlap 565587 565584 565579, overlap 565584 TTGAGAAGAAAATAT CTCCTTCAAA CTTAGC TTTGGAGGAG TTATTTTTTATGTCA USA300HOU_0513 565535 - 565687 + | hypothetical protein TERM 521 565682 - 565671 - T 83 -2.2 -5.9218 | TACATAAGAAAAAAA CCCT TCAA AGAG ACTGAGAATAGTCAA nupC1 566948 - 565734 - | CNT family concentrative nucleoside transporter TERM 522 566520 - 566532 + g 71 -7.7 -3.62644 | opp_overlap 566516 TTGTCCCAAAATTGC TGCAG CAA CTGCA TTGTATGATTCTAAA ctsR 567106 - 567567 + | CtsR family transcriptional regulator USA300HOU_0516 567586 - 568152 + | hypothetical protein USA300HOU_0517 568139 - 569149 + | ATP:guanido phosphotransferase TERM 523 571489 - 571477 - g 72 -2.7 -5.38047 | opp_overlap 571478, overlap 571478 GAGCGATACAAAAAA CTATC GAA GATAA TTTAAGTGAATTAAT USA300HOU_0518 569163 - 571619 + | AAA family ATP-binding protein TERM 524 571657 - 571628 - f 76 -6.5 -4.59069 | opp_overlap 571628, overlap 571623 AGCATAATTATAAAA CAGTCCAAAAC AAATTAAA GTTTTGGGCTG TTTTTTTAGTAGCAT TERM 525 571628 - 571657 + F 100 -8.7 -5.52986 | opp_overlap 571623 571628 AGCATAATTATAAAA CAGTCCAAAAC AAATTAAA GTTTTGGGCTG TTTTTTTAGTAGCAT radA 572104 - 573468 + | DNA repair protein RadA USA300HOU_0520 573493 - 574566 + | hypothetical protein TERM 526 575706 - 575693 - g 74 -2.3 -5.44119 | GTTATCGTAAAAAAA GATGG CATT CCAAC GTACAATTTTGCAGT TERM 527 576135 - 576119 - g 76 -3.7 -5.35815 | overlap 576121 TATATGAAACAAAAA GATACTG AAA CAGTATT CCAATTAGCATTACC TERM 528 576133 - 576121 - g 74 -6.3 -4.29436 | overlap 576119 TATGAAACAAAAAGA TACTG AAA CAGTA TTCCAATTAGCATTA gltX 575123 - 576577 + | glutamyl-tRNA synthetase TERM 529 576897 - 576932 + F 100 -10.6 -5.32699 | gap 1, opp_overlap 576910 TGGAACCGTGCGGAA GCGCCTCTAACAATACA ACT TGTAT-GTTAGTGGTGC TTTTTTGATATTTAA cysE 576916 - 577647 + | serine O-acetyltransferase TERM 530 578117 - 578090 - gf 77 -8.6 -3.61103 | GAAGGTTATGGTAAA TTAAGTCATCAA TCCA TAGATGACTTAA AAGTGGGTGCTCGTA TERM 531 578670 - 578682 + GF 71 -6.3 -4.10007 | TTGATCAAATTGATG CGATT TTA AATCG TTTTGAAACAGTTAT TERM 532 578942 - 578932 - gf 70 -4 -4.93547 | TGAAGCAAGGAAAAA CAAA GAT TTTG CACGAGCAGATGAAA cysS 577601 - 579031 + | cysteinyl-tRNA synthetase USA300HOU_0524 579024 - 579428 + | hypothetical protein TERM 533 579601 - 579611 + G 70 -4 -5.02074 | opp_overlap 579601 CAAACTGTACCAAAA TCTA AAT TAGA TTTTTTAGCAAATGC USA300HOU_0525 579436 - 580182 + | RNA methyltransferase USA300HOU_0526 580182 - 580706 + | hypothetical protein USA300HOU_0527 580787 - 581356 + | hypothetical protein rpmG1 581471 - 581614 + | 50S ribosomal protein L33 secE 581670 - 581852 + | preprotein translocase subunit SecE nusG 581865 - 582413 + | transcription antitermination protein TERM 534 582426 - 582408 - f 71 -7.6 -3.48193 | opp_overlap 582408, overlap 582407 GATCAAATAGAAAAG CTTTAATT AAC AATTAAAG TTATTAAACTAACCA TERM 535 582408 - 582426 + F 72 -7.6 -3.65046 | opp_overlap 582407 582408 GATCAAATAGAAAAG CTTTAATT AAC AATTAAAG TTATTAAACTAACCA TERM 536 582493 - 582515 + F 74 -7.6 -3.72893 | AGTGTTAAAATTATG TGGTCGCGCT TTT AGAGCGCCCA TTTCGTCACGAAATG TERM 537 582868 - 582855 - g 80 -6.7 -4.65895 | GCTGGTATTGAAAAA GGTTC AGGC GAACC AAACAAAACTAAAGT rplK 582594 - 583016 + | 50S ribosomal protein L11 TERM 538 583548 - 583534 - g 76 -4.2 -5.04987 | opp_overlap 583543, overlap 583535 AATACGTTCAAAAAA TCCAAC AAG GTTGGT TCGACTTCGATGTAG TERM 539 583547 - 583535 - g 71 -7.7 -3.61908 | opp_overlap 583543, overlap 583534 ATACGTTCAAAAAAT CCAAC AAG GTTGG TTCGACTTCGATGTA rplA 583224 - 583916 + | 50S ribosomal protein L1 TERM 540 583969 - 583930 - f 70 -5.8 -4.20027 | opp_overlap 583930 583940, overlap 583933 AATAAATGATATAAA CAATTACAGGCTGAAAGA AATA TCTTTCAGTCTGTAAAAA TATATTGACAATAAG TERM 541 583966 - 583933 - f 100 -14.1 -4.19324 | opp_overlap 583930 583940, overlap 583930 AAATGATATAAACAA TTACAGGCTGAAAGA AATA TCTTTCAGTCTGTAA AAATATATTGACAAT TERM 542 583940 - 583959 + F 75 -9.4 -2.8937 | opp_overlap 583933 583930, overlap 583930 ATAAACAATTACAGG CTGAAAGA AATA TCTTTCAG TCTGTAAAAATATAT TERM 543 584109 - 584135 + F 100 -12.4 -5.9003 | opp_overlap 584112 584132 TCTATGATCTTTCAA GCACTTTTTGCC GTG GGTAGAAAGTGC TTTTTTTATTAATTT TERM 544 584162 - 584132 - f 86 -10 -3.85698 | opp_overlap 584109 TGCCGTGGGTAGAAA GTGCTTTTTTTA TTAATTT TAAAAAAAGCAC CAAAAATTTAAATGG rplJ 584188 - 584688 + | 50S ribosomal protein L10 TERM 545 584697 - 584679 - f 71 -3.1 -5.18715 | overlap 584689 ACAAAAAGAAGAAAA CGCTGAA TAATT TTTAGCG TAAAAAAATTAAAAA TERM 546 584917 - 584891 - g 70 -2.3 -5.31275 | CTGCAGCAGAAAAAA CTGAATTTGAC GTTGA GTTAACTTCAG CTGGTTCATCTAAAA rplL1 584731 - 585099 + | 50S ribosomal protein L7/L12 TERM 547 585131 - 585151 + F 77 -9.9 -2.90492 | opp_overlap 585129 585128, overlap 585123 TTAATAATCAAAGTT TTATAGCAA GTA TTGCTATAA TATAATGATTCTTTG TERM 548 585205 - 585172 - f 100 -14.1 -2.57564 | opp_overlap 585173 585178, overlap 585178 TGATTCTTTGAGAAG TTAAAACCCCGTTAT TTTG ATAACGGGGTTTTAT TCATTTAAAGACTGA TERM 549 585173 - 585204 + F 100 -17.6 -3.51708 | opp_overlap 585172 585178, overlap 585178 GATTCTTTGAGAAGT TAAAACCCCGTTAT TTTG ATAACGGGGTTTTA TTCATTTAAAGACTG TERM 550 585178 - 585199 + F 100 -13.1 -4.84642 | opp_overlap 585172 585178, overlap 585173 TTTGAGAAGTTAAAA CCCCGTTAT TTTG ATAACGGGG TTTTATTCATTTAAA TERM 551 585199 - 585178 - f 100 -13.1 -4.3208 | opp_overlap 585178 585173, overlap 585172 TTTGAGAAGTTAAAA CCCCGTTAT TTTG ATAACGGGG TTTTATTCATTTAAA USA300HOU_0535 585274 - 585882 + | hypothetical protein TERM 552 586148 - 586136 - g 71 -7.7 -3.66883 | GGAAGACATCGTAAA CGTAG AAA CTACG CGAGAATTTCAGAAG TERM 553 586976 - 586964 - g 73 -4.1 -4.88407 | TTATTTAATCAAAAA TTAGC TGA GCCAA TTGTAAATACTGAAA rpoB 586097 - 589648 + | DNA-directed RNA polymerase subunit beta rpoC 589785 - 593408 + | DNA-directed RNA polymerase subunit beta' TERM 554 593417 - 593447 + F 100 -10.7 -5.00642 | gap 1, opp_overlap 593420 593422, overlap 593422 GGAATAACAAGTATA TAACA-GAGGCTAA TGCT TTAGCCTCTTGTTA TTTTTATGTAAATTA TERM 555 593443 - 593420 - f 74 -8.2 -3.65434 | opp_overlap 593417 593422, overlap 593422 ATAACAAGTATATAA CAGAGGCTAA TGCT TTAGCCTCTT GTTATTTTTATGTAA TERM 556 593422 - 593441 + F 100 -10.8 -4.37863 | opp_overlap 593420 593422, overlap 593417 AACAAGTATATAACA GAGGCTAA TGCT TTAGCCTC TTGTTATTTTTATGT TERM 557 593441 - 593422 - f 87 -10.8 -3.39274 | opp_overlap 593422 593417, overlap 593420 AACAAGTATATAACA GAGGCTAA TGCT TTAGCCTC TTGTTATTTTTATGT TERM 558 593616 - 593606 - g 74 -6.8 -4.41348 | TTGGTCTTAAAGAAA CGCT TAA AGCG TTAAAGAAAGATCAA USA300HOU_0538 593488 - 593799 + | putative ribosomal protein L7Ae-like TERM 559 593802 - 593826 + F 74 -5.1 -4.88918 | opp_overlap 593803, overlap 593797 593803 ATTGATTAAATGAGA ATTAGTAAGTG TTT TACTTACTAAA TTTTATTTAACCTAA TERM 560 593803 - 593825 + F 76 -8.6 -3.52628 | opp_overlap 593803, overlap 593802 593797 TTGATTAAATGAGAA TTAGTAAGTG TTT TACTTACTAA ATTTTATTTAACCTA TERM 561 593825 - 593803 - f 72 -7.9 -3.62849 | opp_overlap 593803 593802 593797 TTGATTAAATGAGAA TTAGTAAGT GTTTT ACTTACTAA ATTTTATTTAACCTA rpsL 593897 - 594310 + | 30S ribosomal protein S12 rpsG 594376 - 594846 + | 30S ribosomal protein S7 TERM 562 595116 - 595087 - f 71 -5.8 -4.42386 | GCCGTATCCACAAAA TTGGTGAAACAC ACGAAG GTGCTTCACAAA TGGACTGGATGGAGC TERM 563 597187 - 597225 + F 74 -9.1 -2.88634 | opp_overlap 597187 597190, overlap 597186 597181 597190 TTGCATCGCTATAAA TAATTTCTCATGATGGT GAGAA ACTATCATGAGAGATAA ATTTAAATATTATTT TERM 564 597190 - 597222 + F 82 -10.8 -2.67958 | opp_overlap 597187 597190, overlap 597187 597186 597181 CATCGCTATAAATAA TTTCTCATGATGGT GAGAA ACTATCATGAGAGA TAAATTTAAATATTA TERM 565 597222 - 597190 - f 70 -6.4 -4.07133 | opp_overlap 597190 597187 597186 597181, overlap 597187 CATCGCTATAAATAA TTTCTCATGATGGT GAGAA ACTATCATGAGAGA TAAATTTAAATATTA TERM 566 597369 - 597352 - g 71 -7.7 -3.53836 | opp_overlap 597352 597354, overlap 597361 GTAAAACAACATTAA CAGCAGC AATC GCTACTG TATTAGCAAAAAATG tufA 597267 - 598451 + | elongation factor Tu TERM 567 598471 - 598516 + T 82 -10.7 -2.81535 | opp_overlap 598481 598484 598487, overlap 598484 TAATTTCTTAGATTT TATATAAAAAGAAGATCCCTC AATC GAGGGGTCTTTTTTTAATGTG TAAATTTTGTAATGG TERM 568 598506 - 598481 - T 80 -6.1 -4.9792 | opp_overlap 598471 598484, overlap 598484 598487 GATTTTATATAAAAA GAAGATCCCTC AATC GAGGGGTCTTT TTTTAATGTGTAAAT TERM 569 598503 - 598484 - T 83 -7.8 -4.58943 | opp_overlap 598471 598484, overlap 598481 598487 TTTATATAAAAAGAA GATCCCTC AATC GAGGGGTC TTTTTTTAATGTGTA TERM 570 598484 - 598503 + T 100 -10 -5.60864 | opp_overlap 598484 598481 598487, overlap 598471 TTTATATAAAAAGAA GATCCCTC AATC GAGGGGTC TTTTTTTAATGTGTA TERM 571 598630 - 598688 + T 100 -14.9 -3.67481 | opp_overlap 598635, overlap 598635 GAGTCTTGGACATTG TAAAATGCTCCCTTCAAAGTTTTCATT TTTTC AATGTCTACTTTGAAGGGAGCATTTCA TTAGTTTATGTCTCA TERM 572 598683 - 598635 - T 100 -14.8 -4.16943 | opp_overlap 598630 598635 TTGGACATTGTAAAA TGCTCCCTTCAAAGTTTTCATT TTTTC AATGTCTACTTTGAAGGGAGCA TTTCATTAGTTTATG TERM 573 598635 - 598683 + T 100 -14.8 -4.06001 | opp_overlap 598635, overlap 598630 TTGGACATTGTAAAA TGCTCCCTTCAAAGTTTTCATT TTTTC AATGTCTACTTTGAAGGGAGCA TTTCATTAGTTTATG USA300HOU_0542 599908 - 598733 - | M20D subfamily peptidase TERM 574 600617 - 600604 - g 71 -5.3 -4.46073 | GGTCAATACAATAAA GTGAT GTAT ATCAC TGATGGCGTTTTTAG kbl 600079 - 601266 + | 2-amino-3-ketobutyrate coenzyme A ligase TERM 575 601278 - 601302 + F 100 -10.7 -5.66989 | overlap 601279 TTAATATTTATTTAT TCCCACGGCAA ATA TTGTCGTGGGC TTTTTTTAATGTTTA TERM 576 601279 - 601301 + F 100 -14.2 -3.97753 | overlap 601278 TAATATTTATTTATT CCCACGGCAA ATA TTGTCGTGGG CTTTTTTTAATGTTT TERM 577 601978 - 601960 - g 70 -4.6 -4.74132 | AGATGTGATTAAAAA TGAATTAG GAC CTGATTCA GACTATTTATCTGTC USA300HOU_0544 601532 - 602410 + | chaperone protein HchA TERM 578 602424 - 602408 - f 74 -5.3 -4.88163 | GCAATACAAAATAAA TAATTAA ATA TTAATTA GAGGAGCCTCATATG TERM 579 602428 - 602456 + F 93 -5.4 -6.06723 | gap 1, overlap 602431 AAATATTAATTAGAG GAG-CCTCATATG TAAA TGTATGAGGGCTC TTTTTTTTTGGCAAA araB 602567 - 604207 + | ribulokinase USA300HOU_0546 604421 - 605386 + | UDP-glucose 4-epimerase ilvE 605721 - 606797 + | branched-chain amino acid aminotransferase USA300HOU_0548 606770 - 606943 + | hypothetical protein USA300HOU_0549 607047 - 607730 + | hydrolase USA300HOU_0550 608508 - 607846 - | deoxynucleoside kinase USA300HOU_0551 609163 - 608501 - | deoxynucleoside kinase USA300HOU_0552 609185 - 609655 + | deaminase USA300HOU_0553 609802 - 610671 + | hydrolase USA300HOU_0554 610692 - 611258 + | hypothetical protein TERM 580 611290 - 611342 + F 81 -3.8 -5.58179 | gap 2, overlap 611313 AATATACATTAAAAA TAGGTATGTAGCTTAA-GGTATT-TC ATT GAGAATGCTTTTAAGTCACATGCCTA TTTTTTGTTCTAATG TERM 581 611920 - 611906 - g 70 -4.3 -4.80959 | overlap 611917 CAAGTGAGAATAAAA CAACT AAAAA AGTTG ATAGTCGTCAACTAA TERM 582 611932 - 611917 - g 77 -3.3 -5.43514 | overlap 611906 AAAACAACTAAAAAA GTTGA TAGTCG TCAAC TAAAAGACAATACGC sdrC 611689 - 614532 + | Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrC TERM 583 614547 - 614565 + F 95 -8.1 -5.56264 | opp_overlap 614535 614547 ATATGATTAACTTAA CCAGGTC CATGT GGCCTGG TTTTTTCTGTTTAGA TERM 584 615193 - 615178 - g 70 -4 -4.95876 | AATGATAATCAAAAA GAAATG GTAT CATCTC AAGGTAATGAAACGA TERM 585 616997 - 616983 - g 76 -2.8 -5.4433 | AGATACAAATAAAAA TGGTAT CCA AGACCA AGATGAAAAAGGTAT TERM 586 618947 - 618925 - g 72 -4.8 -4.70353 | overlap 618926 CACAATAAAGCAAAA GCATTACCAG AAA CAGGTAATGA AAATAGCGGCTCAAA TERM 587 618946 - 618926 - g 72 -8.3 -3.40585 | overlap 618925 ACAATAAAGCAAAAG CATTACCAG AAA CAGGTAATG AAAATAGCGGCTCAA sdrD 614899 - 619044 + | Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD TERM 588 619056 - 619074 + F 95 -8.1 -5.63517 | ATAATACAGCTTATA CCAGGTC CGTGA GGCCTGG TTTTTTATTTCAAAA TERM 589 622816 - 622838 + G 75 -10 -2.71101 | opp_overlap 622812 622821, overlap 622821 AGTGAAAATAACGGC TCAAATAACG CAA CGTTATTTGG TGGATTATTTGCAGC sdrE 619438 - 622902 + | Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE TERM 590 622914 - 622932 + F 100 -8.1 -5.71983 | opp_overlap 622913 ATAATACAATATGAC CCAGGTC CTTGT GGCCTGG TTTTTTTATAATTAC TERM 591 623808 - 623796 - g 75 -4.9 -4.87786 | opp_overlap 623800 GTAATGGTATAAAAA GTTTT TAT AAAAC AGTGTTTAATAATTT USA300HOU_0558 623021 - 624493 + | glycosyltransferase USA300HOU_0559 626107 - 624617 - | glycosyltransferase TERM 592 625517 - 625545 + g 77 -3.3 -5.39755 | opp_overlap 625518, overlap 625518 TTCATTATTAAAGAA ATATTGTTTGTTA GCA TAGTAAACAATAA TTTTTTGTACTTCTG TERM 593 626368 - 626349 - R 100 -10 -5.21236 | opp_overlap 626349 AAGGTATAATAAAAA CGCGCAAC TAAT GTTACGCG TTTGAATTAATCATA TERM 594 626349 - 626368 + r 74 -7.8 -3.79043 | opp_overlap 626349 AAGGTATAATAAAAA CGCGCAAC TAAT GTTACGCG TTTGAATTAATCATA USA300HOU_0560 627267 - 626389 - | putative GTP cyclohydrolase USA300HOU_0561 627945 - 627280 - | hypothetical protein USA300HOU_0562 628327 - 627959 - | hypothetical protein TERM 595 628649 - 628627 - g 77 -4.8 -5.1101 | opp_overlap 628627, overlap 628630 TTAGGATCGAAAAAA CAAGCATCAT TCT ATGTTGCATG TGAGTTATATAAAGA TERM 596 628794 - 628758 - g 82 -5.3 -5.33405 | opp_overlap 628762, overlap 628761 628762 628767 GTTATTAAATAAAAA TCAGTTAAACGTAGACA ATG TATCCACGTTTAATTTA GACGAATATGTAGGT TERM 597 628790 - 628762 - g 78 -10.5 -2.65994 | opp_overlap 628762, overlap 628761 628758 628767 TTAAATAAAAATCAG TTAAACGTAGACA ATG TATCCACGTTTAA TTTAGACGAATATGT nagB 628597 - 629355 + | glucosamine-6-phosphate deaminase USA300HOU_0564 629432 - 630064 + | 3-hexulose-6-phosphate synthase USA300HOU_0565 630066 - 630614 + | glucose-6-phosphate isomerase TERM 598 630623 - 630663 + F 85 -2.8 -5.96894 | gap 1, opp_overlap 630626 AGAATAAAATAAAGA TAGTCGATAATA-TGATGC CTAG GCAGAAATATTATCGATTA TTTTTTTATTTAAAT TERM 599 630803 - 630784 - g 70 -2.1 -5.24989 | GCAGACACGAAAAAA TGTGGTG AAGTAG CAACACA AAGTGCATTTAAAGC USA300HOU_0566 630727 - 631374 + | phosphatase TERM 600 631651 - 631609 - f 88 -9.3 -4.12456 | opp_overlap 631609 631611 ATACGATGTCGAAAA TGGCGATAGCATATCACTT ACATG AAGTTATGTGCTATCGCTA TTTTTAGTTATAATT TERM 601 631609 - 631651 + F 100 -13.7 -4.95876 | opp_overlap 631609, overlap 631611 ATACGATGTCGAAAA TGGCGATAGCATATCACTT ACATG AAGTTATGTGCTATCGCTA TTTTTAGTTATAATT TERM 602 631611 - 631649 + F 100 -14.1 -4.08682 | opp_overlap 631609, overlap 631609 ACGATGTCGAAAATG GCGATAGCATATCACTT ACATG AAGTTATGTGCTATCGC TATTTTTAGTTATAA TERM 603 631945 - 631931 - g 85 -4.2 -5.59564 | overlap 631933 AGAAAGCTAAAAAAA CCGTTG TTG CAACCG GTATCGGTAATGCAA proP 631876 - 633276 + | major facilitator superfamily proline/betaine:cation symporter TERM 604 633313 - 633351 + F 100 -17 -4.74103 | opp_overlap 633303 633313 ATCAATCGTATATAA GCACTTTAAAGCTAGTAG GTT CTGCTAACTTTAAAGTGC TTTTTAAATTGAGAA TERM 605 633351 - 633313 - f 100 -17 -3.52459 | opp_overlap 633313, overlap 633303 ATCAATCGTATATAA GCACTTTAAAGCTAGTAG GTT CTGCTAACTTTAAAGTGC TTTTTAAATTGAGAA TERM 606 633435 - 633406 - f 100 -15.1 -4.17296 | TTGTATATACATAAA CCCCCACTGCAAT GATT ATCGCAATGGGGG AAAGAGGGGACTTAA TERM 607 633617 - 633636 + F 79 -7.2 -4.42325 | GACTTATTTGTGTCA GTTATTGC GATT GCGATAAC TTCTTTTCTCTATAT TERM 608 634349 - 634320 - g 88 -7.9 -4.86862 | GTTAAAAAATGAAAA TGCAATAGCAGCC CCTG GACCACTATCGCA CTCGTTAACATTATA TERM 609 634415 - 634431 + G 72 -8.1 -3.41134 | opp_overlap 634415 634412 TTATAGGACAGACCA CTTTTCA TCC TGAAAAG TTACTTAATCAATGT TERM 610 634622 - 634596 - g 78 -2.4 -5.69068 | opp_overlap 634596 TAAAAAGATAAAAAA TCAAGCAAAT GACATAA ATTTGATTGA ATTTTTTGGTACATC vraA 633820 - 635196 + | long-chain-fatty-acid--CoA ligase TERM 611 635785 - 635758 - gf 79 -4.2 -5.2696 | opp_overlap 635764, overlap 635759 635764 635783 GGAAAATGTAAAAAA TGGAAATATTTC TCAG GAAATATTACCT ATAACCGTTAAAGGA TERM 612 635784 - 635759 - gf 74 -7.7 -3.74549 | opp_overlap 635764, overlap 635758 635764 635783 GAAAATGTAAAAAAT GGAAATATTTC TCAG GAAATATTACC TATAACCGTTAAAGG vraB 635198 - 636337 + | acetyl-CoA C-acetyltransferase TERM 613 636504 - 636486 - g 73 -9 -3.24735 | TATGCAAATAGCGAA CTGATTTT AAC AAAATCAG CAATTAATCAAACTC USA300HOU_0570 636312 - 636677 + | hypothetical protein USA300HOU_0571 636680 - 636949 + | hypothetical protein TERM 614 636946 - 636927 - T 82 -4.4 -5.52079 | AGATTAAAATAAAAA TTTCTTTG AGCA CAAAAAAA TAACCGATATTAGCT USA300HOU_0572 637317 - 637150 - | hypothetical protein TERM 615 637740 - 637791 + r 76 -9.6 -2.84467 | opp_overlap 637741, overlap 637737 GATGATTATAAAAAA ATAACCACATCACATAAATTGAGT TCAT ACCCAATTTAAGTGGTGTGGCTAA TAATGTTGATTTATA TERM 616 637790 - 637741 - R 100 -15.3 -5.67967 | opp_overlap 637740 637737 ATGATTATAAAAAAA TAACCACATCACATAAATTGAGT TCAT ACCCAATTTAAGTGGTGTGGCTA ATAATGTTGATTTAT thiD 638654 - 637824 - | phosphomethylpyrimidine kinase ung 638838 - 639494 + | uracil-DNA glycosylase TERM 617 639602 - 639582 - g 76 -6.3 -4.60487 | opp_overlap 639584, overlap 639584 CATGACTTTGAAAAA CATATGTAT GCC ATACATATA TTAACATCTTTATAT USA300HOU_0575 639495 - 639875 + | hypothetical protein TERM 618 640301 - 640319 + G 79 -8.9 -3.77722 | overlap 640318 AGTTTTAGGTGCGAT TACGCCA ATTGG TGGCGTA TTGTTCATCATTGGA USA300HOU_0576 640008 - 640376 + | hypothetical protein TERM 619 640455 - 640443 - f 82 -6.3 -5.23396 | opp_overlap 640443 640442 640447 640453 AATAATCAAGAAAAA GAGTT ACA AACTC ATCTTTTGGGTATAG TERM 620 640453 - 640487 + F 82 -5 -5.38054 | opp_overlap 640443, overlap 640443 640442 640447 AAAAAGAGTTACAAA CTCATCTTTTGGGTAT AGA ATACCTTCGAGGTGAG TTTTTATTTATGGAA TERM 621 641354 - 641372 + G 76 -7.5 -4.08221 | overlap 641350 GTTGTGGTTAACAGG TGCTGTT ACACA AACAGCA TTTGGTTATATTGGA USA300HOU_0577 640497 - 641981 + | APC family amino acid-polyamine-organocation transporter TERM 622 642033 - 641987 - T 76 -5.2 -5.03961 | opp_overlap 641990, overlap 641990 AACTAAATAATAAAA GAATCGCACAATAAACCTTC TTCATTC GGAGGCGTATCGTGCGATTT TTTGTATTATAAATT TERM 623 641990 - 642030 + T 85 -4.7 -5.5208 | opp_overlap 641987 641990 TAAATAATAAAAGAA TCGCACAATAAACCTTC TTCATTC GGAGGCGTATCGTGCGA TTTTTTGTATTATAA TERM 624 642030 - 641990 - T 78 -6.9 -4.57912 | opp_overlap 641990, overlap 641987 TAAATAATAAAAGAA TCGCACAATAAACCTTC TTCATTC GGAGGCGTATCGTGCGA TTTTTTGTATTATAA USA300HOU_0578 642575 - 642123 - | hypothetical protein USA300HOU_0579 643352 - 642588 - | hypothetical protein TERM 625 643702 - 643728 + r 100 -16.8 -4.49316 | opp_overlap 643697 AGGAAGACTACTCGG GTACACTTTGCT ATG AGCAAAGTGTAC TTTGTTATTGATAAT TERM 626 643841 - 643868 + r 100 -11.5 -5.9003 | opp_overlap 643841 AAGATAAACGAAAAA TTCCAAGCTTA AACCGA TAAGCTTGGAA TTTTTTTATTAATTT TERM 627 643868 - 643841 - R 100 -11.5 -5.08367 | opp_overlap 643841 AAGATAAACGAAAAA TTCCAAGCTTA AACCGA TAAGCTTGGAA TTTTTTTATTAATTT USA300HOU_0580 644653 - 643901 - | putative heme peroxidase TERM 628 644504 - 644516 + g 74 -6.3 -4.3898 | AGATTTTGATGATCT TACAG TTG CTGTA TTTTCTAAAAATGAT TERM 629 645596 - 645586 - g 70 -2.4 -5.24129 | opp_overlap 645586 GTTGCTGAGAAAAAA GCGC CAG GTGC TAAATTACAAGGTGA pta 644821 - 645807 + | phosphotransacetylase lplA2 645810 - 646646 + | lipoate--protein ligase A TERM 630 647539 - 647555 + G 80 -6.5 -4.71426 | GGATTAGGATCGAGT GCAGCTG TCG CGGTTGC TTTTGTTCGTGCAAG TERM 631 648122 - 648112 - g 83 -6.8 -4.86033 | AAAGCTGTAGAAAAA GCTG GTG CAGC ACATACTTGGATTGA mvaK1 647233 - 648153 + | mevalonate kinase mvaD 648158 - 649141 + | mevalonate diphosphate decarboxylase mvaK2 649154 - 650230 + | phosphomevalonate kinase USA300HOU_0586 650407 - 650748 + | hypothetical protein TERM 632 650786 - 650750 - T 89 -8.8 -4.54323 | gap 1, opp_overlap 650751, overlap 650751 AAGCACAACAATAAA GCCTGATGGCA-GCATC ATTC AATGCGTGCCACCAGGT TTTTATGTTTTGTCT TERM 633 650751 - 650785 + T 100 -9.4 -5.32599 | gap 1, opp_overlap 650750 650751 AGCACAACAATAAAG CCTGATGGCA-GCAT CATTCA ATGCGTGCCACCAGG TTTTTATGTTTTGTC TERM 634 650785 - 650751 - T 100 -12.3 -3.30967 | gap 1, opp_overlap 650751, overlap 650750 AGCACAACAATAAAG CCTGATGGCA-GCATC ATTC AATGCGTGCCACCAGG TTTTTATGTTTTGTC USA300HOU_0587 652122 - 650800 - | pyridine nucleotide-disulfide reductase USA300HOU_0588 652549 - 652109 - | hypothetical protein USA300HOU_0589 652530 - 652628 + | hypothetical protein USA300HOU_0590 652607 - 652708 + | hypothetical protein TERM 635 653707 - 653697 - g 73 -4 -5.11937 | overlap 653678 653699 AAGAATTTCAAAAAA TTGT CCA ACAA GGACTTACCCAAGCG USA300HOU_0591 653168 - 654583 + | hypothetical protein USA300HOU_0592 654587 - 655213 + | hypothetical protein TERM 636 655767 - 655746 - g 73 -8.9 -3.21747 | opp_overlap 655746 TGATCGGAGTAGCAA TGGAAAAAT TATG ATTTTTCCA TCATTCAAGAATCTT USA300HOU_0593 655339 - 655980 + | hypothetical protein USA300HOU_0594 656068 - 656685 + | hypothetical protein TERM 637 657307 - 657320 + G 71 -6.7 -4.11585 | TTCTTGCTTTAATTG GCATG ACTG CATGC TTCTTTCTACTGAAT USA300HOU_0595 656760 - 657389 + | hypothetical protein USA300HOU_0596 657446 - 657562 + | hypothetical protein USA300HOU_0597 657585 - 658205 + | hypothetical protein TERM 638 658785 - 658795 + G 79 -4 -5.49234 | opp_overlap 658785 CTCCTTTAAAAATAT TTGT TTC ACAA TTTTTTATTACCTAT USA300HOU_0598 658336 - 658977 + | hypothetical protein USA300HOU_0600 659659 - 659739 + | hypothetical protein USA300HOU_0601 660106 - 660735 + | hypothetical protein USA300HOU_0602 660850 - 661500 + | hypothetical protein USA300HOU_0603 661537 - 662172 + | hypothetical protein USA300HOU_0604 662138 - 662383 + | hypothetical protein USA300HOU_0605 662407 - 663033 + | hypothetical protein USA300HOU_0606 663303 - 664241 + | dehydrogenase USA300HOU_0607 664452 - 664988 + | hypothetical protein TERM 639 665004 - 665029 + F 86 -3.3 -5.95286 | overlap 665007 GACATACCTCATACT AAACGAAGTGA TTTT TTGCTTCGTTA TTTTTTATTTTTAAT TERM 640 665007 - 665026 + F 74 -5 -4.97159 | overlap 665004 ATACCTCATACTAAA CGAAGTGA TTTT TTGCTTCG TTATTTTTTATTTTT TERM 641 665358 - 665372 + G 74 -6.4 -4.44046 | GAAGGTAATGACATC GTTGGC TTT GCTAAC TTTATTTACGGTGAA USA300HOU_0608 665157 - 665633 + | acetytransferase USA300HOU_0609 665673 - 666968 + | phosphohydrolase TERM 642 667069 - 667052 - f 78 -4.1 -5.36965 | overlap 667056 TAATATCATAAAAAA TGACCCT CTAG ATGGTCA TAAAGGTACAAATAT TERM 643 667860 - 667846 - f 71 -7.2 -3.72241 | opp_overlap 667845 667846 TATTAACTAGGGAAA CGTTAA AAG TTAACG GTTGATATCTAACTA adh 668016 - 669026 + | alcohol dehydrogenase TERM 644 669089 - 669124 + F 100 -10.6 -5.46698 | opp_overlap 669089 ATCATTATAATCAAA CACGAGGTTTTCATGA AAGA TAGTGAAAATCTCGTG TTTTTTGGTTTTGAG USA300HOU_0611 669101 - 669208 + | hypothetical protein USA300HOU_0612 669289 - 669717 + | hypothetical protein argS 669714 - 671375 + | arginyl-tRNA synthetase TERM 645 671389 - 671432 + F 100 -14.8 -5.51402 | opp_overlap 671389 671391 AAGAACATTTATATA CACTCCAACGTAGAGTTTCT CGAA AGATACTTTGTGTTGGAGTG TTTTTTTAGGTATGT TERM 646 671596 - 671608 + F 90 -7.7 -5.1925 | opp_overlap 671595 ACTGAACGAAAATTC GCTTG TAA CAAGC TTTTTTCAATTCTAG TERM 647 671675 - 671652 - f 72 -6.8 -4.15044 | opp_overlap 671658, overlap 671654 671658 CGGGGCCCCAACAAA GAGAAATTGG ATTC CCAATTTCTA CAGACAATGCAAGTT TERM 648 671673 - 671654 - f 81 -9.4 -3.6761 | opp_overlap 671658, overlap 671652 671658 GGGCCCCAACAAAGA GAAATTGG ATTC CCAATTTC TACAGACAATGCAAG USA300HOU_0614 671763 - 672398 + | deoxyribonuclease (pyrimidine dimer) USA300HOU_0615 672777 - 673664 + | iron (Fe3+) ABC transporter binding protein TERM 649 673680 - 673723 + F 78 -6.9 -4.6644 | gap 1 ACCATTCTAATTATG CCCCTTATTGC-TACATGTA AAAAA TACATGTTTGAGATAAGGGG TTTTTAAAATATATT USA300HOU_0616 673776 - 674762 + | iron (Fe3+) ABC transporter membrane protein USA300HOU_0617 674817 - 675536 + | hydrolase TERM 650 675551 - 675541 - g 71 -5.4 -4.4767 | CTATTTACTAGAAAA GATG GAA CATC GATACATTACAGTAC USA300HOU_0618 675520 - 676320 + | hydrolase TERM 651 676908 - 676885 - g 77 -6 -4.72846 | GGATATATTGAAAAA GGCAAAACGA CTTA TCAATTTGCC TCAGCACCAAAAGAT USA300HOU_0619 676456 - 676962 + | hypothetical protein TERM 652 676982 - 677016 + F 89 -8.8 -4.67982 | TAAATTAATCGTGCT TAACCGACAAGT TAAATCGCAAT ACTTGTCGGTTA TTTTATTACATGGCA TERM 653 677251 - 677240 - g 74 -3 -5.38047 | TACTGATATAAAAAA TTCT GAAA AGAA AGATCAAGATTATAT USA300HOU_0620 677097 - 677840 + | hypothetical protein TERM 654 677844 - 677897 + F 77 -8.7 -3.6579 | gap 1, opp_overlap 677847 677852, overlap 677852 ACAAGATTATAAATA TGATAAAACTATTCA-CTTGATTAAT TGT ATTAATTGAGATGAATAGTTTTTTTA TTGTTGGAATAACTT TERM 655 677852 - 677889 + F 100 -8.1 -5.95946 | gap 1, opp_overlap 677852 677847, overlap 677844 ATAAATATGATAAAA CTATTCA-CTTGATTAAT TGT ATTAATTGAGATGAATAG TTTTTTTATTGTTGG USA300HOU_0621 678009 - 678797 + | hydrolase TERM 656 678880 - 678847 - T 76 -6.2 -4.67234 | gap 1, opp_overlap 678847 AGGCAATGTGAAAAA GCTGATTACTATTCA TTATT TGA-TAGAAATCAGC TTTTTTTGAAATGTA TERM 657 678847 - 678880 + T 86 -6.2 -5.45726 | gap 1, opp_overlap 678847 AGGCAATGTGAAAAA GCTGATTACTATTCA TTATT TGA-TAGAAATCAGC TTTTTTTGAAATGTA TERM 658 679027 - 678992 - T 95 -6.4 -5.70829 | gap 1, overlap 678993 AAGAGCATAAAAAAA GGAAGTTTAATAGAATG TAT CAT-CTATCAAACTTCA CCAAATTGCGCTAAA TERM 659 679026 - 678993 - T 90 -9.9 -4.00057 | gap 1, overlap 678992 AGAGCATAAAAAAAG GAAGTTTAATAGAATG TAT CAT-CTATCAAACTTC ACCAAATTGCGCTAA sarA 679422 - 679048 - | staphylococcal accessory regulator A TERM 660 679093 - 679112 + g 83 -5 -5.57054 | GATTCGTTTATTTAC TCGACTCA ATAA TGATTCGA TTTTTTTACGTTGTT TERM 661 679524 - 679557 + r 71 -7.7 -3.38446 | GTTAGTCATAATTTT GCATTAAATAAGTTT TATT AAATATATTTAATGC TCTATTATTTAGTTA USA300HOU_0623 680281 - 680132 - | hypothetical protein TERM 662 682223 - 682262 + r 81 -7.3 -4.59882 | gap 1, opp_overlap 682227 GAGGATATATGTTCA TCAACTCCCGATAC-CAT CGCTA AAGCGTATAGGGAGTTGA TTCTTTATTTTTTCA USA300HOU_0626 682623 - 682267 - | hypothetical protein USA300HOU_0627 683269 - 682679 - | hypothetical protein USA300HOU_0628 684322 - 683276 - | hypothetical protein TERM 663 684268 - 684279 + g 78 -7.2 -4.29928 | opp_overlap 684268 CTAATTTCAATTTAA CGCC TATT GGCG TTTTACCTATTACTT USA300HOU_0629 686159 - 684312 - | hypothetical protein TERM 664 686154 - 686130 - G 88 -7.3 -5.10154 | opp_overlap 686130, overlap 686147 AGGCAAAATTAAAAA GCATAAAAG ATACACA CTTTTATGC TTCATCAAATCACTC USA300HOU_0630 687522 - 686164 - | FtsK/SpoIIIE family cell division protein TERM 665 687569 - 687548 - R 100 -11.7 -5.45802 | opp_overlap 687553 CCTTTAAAATAAAAA GCACATACA ATTT TGTATGTGC TAAAAATTACATCGC USA300HOU_0631 690071 - 687576 - | hypothetical protein TERM 666 687901 - 687913 + g 88 -7.7 -4.87786 | AGTGAATTATTCTCA GAACG TCC CGTTC TTTTTATACGCTTAC TERM 667 689163 - 689175 + g 71 -3.3 -5.19998 | TTCCGAAGCACTGTC GCCAG TAT CTTGC TTTTCTTTTGCTTGT TERM 668 689236 - 689248 + g 77 -4.9 -5.10154 | TTTTTCTTAACTTTC TCATT ATT AATGA TTTTTGCTTTTACAT TERM 669 690108 - 690091 - R 90 -7.7 -5.06414 | opp_overlap 690085 690091 690094 TCCCTCCAATAAAAA TAACCCC AATA GGGGCTA TTTAAATGTTATTTT USA300HOU_0632 690489 - 690106 - | hypothetical protein USA300HOU_0633 690761 - 690501 - | hypothetical protein USA300HOU_0634 691821 - 690766 - | hypothetical protein TERM 670 690846 - 690864 + g 72 -6 -4.36903 | opp_overlap 690848, overlap 690848 ATGTGTAATGCTCCA AATTCTCC AAA GGAGAATC TTTATCTTTCATCAA TERM 671 690848 - 690862 + g 79 -8.6 -3.78193 | opp_overlap 690848, overlap 690846 GTGTAATGCTCCAAA TTCTCC AAA GGAGAA TCTTTATCTTTCATC TERM 672 690862 - 690848 - G 77 -8.6 -3.57561 | opp_overlap 690848 690846 GTGTAATGCTCCAAA TTCTCC AAA GGAGAA TCTTTATCTTTCATC TERM 673 691411 - 691444 + g 72 -8.4 -3.36837 | opp_overlap 691411, overlap 691410 TTCTGTATCTGAAAT TTTTTCATCAGGTT TTTTAT AATCTGATGGAAAA TATTTCAACAATTCT TERM 674 691816 - 691849 + g 74 -5.5 -4.72986 | opp_overlap 691826 GTACTTGCTTATTAT TTTCATAAACGATTT TCTA AAATCCTTTACGAAA TTTTTAATAAAAATC TERM 675 691885 - 691906 + r 93 -5.9 -6.09196 | opp_overlap 691888, overlap 691886 CCAGTTATTTTTTTA ACACTTATC TTTT GATAAGTGC TTTTTTTGTTTTAAA TERM 676 691886 - 691905 + r 89 -9.4 -4.23077 | opp_overlap 691888, overlap 691885 CAGTTATTTTTTTAA CACTTATC TTTT GATAAGTG CTTTTTTTGTTTTAA USA300HOU_0635 692973 - 691882 - | replication initiation protein USA300HOU_0636 693450 - 693148 - | hypothetical protein TERM 677 693246 - 693270 + g 75 -7.1 -4.23434 | opp_overlap 693246 TACACAATAGACAAA GGTCAGCGTAA ATT TTAGGCCGACC TTTTACCGTATTTTC TERM 678 693270 - 693246 - G 89 -9.3 -4.26393 | opp_overlap 693246 TACACAATAGACAAA GGTCAGCGTAA ATT TTAGGCCGACC TTTTACCGTATTTTC USA300HOU_0637 693784 - 693464 - | hypothetical protein USA300HOU_0638 694219 - 693935 - | hypothetical protein TERM 679 694813 - 694779 - R 100 -10 -4.81814 | opp_overlap 694776 694780, overlap 694780 ATTATTACAACAAAA TCACCCTAGACAATCA TGA TGAAAGTCTAGGGTGT TAGTATTTATACTAA TERM 680 694780 - 694812 + r 100 -13.5 -3.51406 | opp_overlap 694779 694780, overlap 694776 TTATTACAACAAAAT CACCCTAGACAATCA TGA TGAAAGTCTAGGGTG TTAGTATTTATACTA TERM 681 694812 - 694780 - R 100 -13.5 -3.48004 | opp_overlap 694780 694776, overlap 694779 TTATTACAACAAAAT CACCCTAGACAATCA TGA TGAAAGTCTAGGGTG TTAGTATTTATACTA USA300HOU_0640 695075 - 694851 - | hypothetical protein USA300HOU_0641 695295 - 695092 - | hypothetical protein TERM 682 695908 - 695895 - g 74 -5.3 -4.72986 | CATGCTTATCAAAAA GGTAT ACCT ATACC AGTCATTCAAAAGTA USA300HOU_0642 695454 - 696014 + | bacteriophage integrase mnhA1 696033 - 698435 + | putative monovalent cation/H+ antiporter subunit A mnhB1 698422 - 698847 + | putative monovalent cation/H+ antiporter subunit B mnhC1 698844 - 699188 + | putative monovalent cation/H+ antiporter subunit C mnhD1 699178 - 700674 + | putative monovalent cation/H+ antiporter subunit D mnhE1 700675 - 701157 + | putative monovalent cation/H+ antiporter subunit E mnhF1 701154 - 701456 + | putative monovalent cation/H+ antiporter subunit F mnhG1 701431 - 701868 + | putative monovalent cation/H+ antiporter subunit G TERM 683 701935 - 701974 + F 82 -4.4 -5.5208 | overlap 701936 AAATTAATCATTAAA AGAGTACTTTGAAATTGG TTAG TCGATTTTAAGGTGCTCA TTTTTTGTATTATAA TERM 684 701936 - 701973 + F 76 -7.9 -3.89621 | overlap 701935 AATTAATCATTAAAA GAGTACTTTGAAATTGG TTAG TCGATTTTAAGGTGCTC ATTTTTTGTATTATA USA300HOU_0650 702208 - 704250 + | CPA1 family monovalent cation (K+ or Na+):proton (H+) antiporter-1 TERM 685 704264 - 704311 + T 100 -19.6 -4.09739 | opp_overlap 704269, overlap 704269 AGTTCCTAATTATGC TAAAAGGGATTGATGAAAAACT GAAG GGCTTTTCATCAATCCCTTTTA TTTTAGGGGAATTGA TERM 686 704269 - 704306 + T 100 -15.1 -5.07652 | opp_overlap 704269, overlap 704264 CTAATTATGCTAAAA GGGATTGATGAAAAACT GAAG GGCTTTTCATCAATCCC TTTTATTTTAGGGGA TERM 687 704306 - 704269 - T 100 -16.6 -4.17023 | opp_overlap 704269 704264 CTAATTATGCTAAAA GGGATTGATGAAAAAC TGAAGG GCTTTTCATCAATCCC TTTTATTTTAGGGGA TERM 688 704486 - 704451 - T 100 -9 -5.28176 | opp_overlap 704457, overlap 704453 TGTATTCACAAAAAA TAGCCACACTCATATG ACAT CGGATGAGTGTGGCTT AAGGATCTATGGGGG TERM 689 704484 - 704453 - T 100 -11.6 -4.2748 | opp_overlap 704457, overlap 704451 TATTCACAAAAAATA GCCACACTCATATG ACAT CGGATGAGTGTGGC TTAAGGATCTATGGG TERM 690 705335 - 705365 + T 100 -14.3 -3.06183 | opp_overlap 705342, overlap 705342 TATGTTGATGTGTGG CCTAAAATATTGG AGATA CCAATATTTTAGG TTGCATCAACATCAA USA300HOU_0651 706339 - 705410 - | ABC transporter ATP-binding protein USA300HOU_0652 707172 - 706336 - | ABC transporter ATP-binding protein TERM 691 706420 - 706408 - G 78 -7.7 -4.19307 | opp_overlap 706408 706407, overlap 706404 706416 GATATAAATTACAAA CGTAC AAA GTACG ATTGTCGCACCACTA TERM 692 706500 - 706521 + g 79 -4.5 -5.2189 | CACTTATTAAACTTG CTATAATCA TCAT TGAGTATAG TTTTTTACTAATTAA USA300HOU_0653 707909 - 707166 - | ABC transporter ATP-binding protein TERM 693 708623 - 708602 - g 73 -7.5 -3.73435 | opp_overlap 708602 708621, overlap 708621 AAATGAATAAAGTAA TTATCATTA AACG TAATGATAA TGTAATTATTGTCAG USA300HOU_0654 708031 - 708675 + | metal-dependent transcriptional regulator USA300HOU_0655 709507 - 708755 - | hypothetical protein TERM 694 709599 - 709611 + H 71 -4.9 -4.77757 | GACTTTAGACTTACC TTAGT TAA ACTAA TTTTAATTTTTGAAA tagA 709743 - 710507 + | teichoic acid biosynthesis protein TERM 695 710528 - 710557 + T 75 -4.2 -5.25805 | opp_overlap 710523 ATGACAAAAATAAAA CCGAGGAAATCC TTAAAT GGAGATTCTCGG TTTTTTCGGTTTATT tagH 711362 - 710568 - | teichoic acids export protein ATP-binding subunit tagG 711688 - 712521 + | teichoic acid ABC transporter ATP-binding/membrane protein TERM 696 712540 - 712570 + F 71 -6.9 -4.00347 | gap 1, opp_overlap 712540 ATTTATATGACGAAA CCCCGCTAACCATT AATA AATGGA-AGTGGGG TTCATTTTTGTTTAT tagB3 712620 - 713723 + | teichoic acid biosynthesis protein B tagX 713720 - 714781 + | teichoic acid biosynthesis protein X tagD 714844 - 715242 + | glycerol-3-phosphate cytidylyltransferase TERM 697 715350 - 715302 - T 76 -7.6 -4.00842 | opp_overlap 715307, overlap 715307 ATTATAAAATAAATA TAAAACGGACAAGTTTCGCA GCTTTATAA TGTGCAACTTGTCCGTTTTT AGTATGTTTTATTTT TERM 698 715307 - 715345 + T 100 -9.7 -4.91573 | opp_overlap 715307 715302 AAAATAAATATAAAA CGGACAAGTTTCGCA GCTTTATAA TGTGCAACTTGTCCG TTTTTAGTATGTTTT TERM 699 715345 - 715307 - T 85 -7.5 -4.95487 | opp_overlap 715307, overlap 715302 AAAATAAATATAAAA CGGACAAGTTTCGCA GCTTTATAA TGTGCAACTTGTCCG TTTTTAGTATGTTTT pbp4 716654 - 715359 - | penicillin-binding protein 4 USA300HOU_0663 717075 - 718802 + | ABC transporter ATP-binding protein USA300HOU_0664 718873 - 718953 + | hypothetical protein TERM 700 719427 - 719439 + G 80 -9.1 -3.65201 | opp_overlap 719420 719417 TAAAATGATGGATAT GGCTG TTG CAGCC TTATTCCCAATATTA nupC2 719161 - 720390 + | CNT family concentrative nucleoside transporter TERM 701 720436 - 720477 + F 100 -13.9 -5.66229 | opp_overlap 720435 720429 720436 TTAACTAATAAATAT GTCCAGGCATGTCGTCTAT TGAT ATAGGTGAGATGCTTGGAC TTTTTTATTATTGAT TERM 702 720570 - 720545 - f 80 -6.2 -4.94902 | opp_overlap 720545 GAAGCATTATAAAAA CCAAGTGCAC ATGGTA ATACACTTGG CTTTTATGGGAAATG USA300HOU_0666 720645 - 720737 + | hypothetical protein USA300HOU_0667 720915 - 721748 + | hypothetical protein TERM 703 721781 - 721825 + F 87 -3.6 -5.86976 | overlap 721782 ACATACTTAAATAGA AGTCCACGGACAAGTTTTTG AACTA TGAAGACTTATCTGTGGGCG TTTTTTATTTTATAA TERM 704 721782 - 721824 + F 75 -7.1 -4.09746 | overlap 721781 CATACTTAAATAGAA GTCCACGGACAAGTTTTTG AACTA TGAAGACTTATCTGTGGGC GTTTTTTATTTTATA fhuC 722030 - 722827 + | iron (Fe3+) ABC transporter ATP-binding protein TERM 705 722978 - 723001 + G 77 -5.3 -4.94972 | opp_overlap 722980, overlap 722980 GTGACGCCAAAATTC AAGCCTCTA CAATTA TAGAGGCTA TTTTTAATTATAATC TERM 706 722980 - 722999 + G 78 -7.9 -4.08682 | opp_overlap 722980, overlap 722978 GACGCCAAAATTCAA GCCTCTA CAATTA TAGAGGC TATTTTTAATTATAA TERM 707 722999 - 722980 - g 75 -8.6 -3.37537 | opp_overlap 722980 722978 GACGCCAAAATTCAA GCCTCTAC AATT ATAGAGGC TATTTTTAATTATAA fhuB 722863 - 723867 + | iron (Fe3+) ABC transporter membrane protein TERM 708 724322 - 724304 - g 71 -3 -5.07486 | overlap 724308 CAGTTTTAATAAAAA TGAAGGTG TTA CACCTGCG AGTATGGTATTAATA TERM 709 724626 - 724648 + G 85 -10.6 -3.36188 | overlap 724611 GCAGTGATGTTATCA TCTGCTGCTG TAG CAGTAGCAGG TTCAATTTCGTTTAT fhuG 723864 - 724880 + | iron (Fe3+) ABC transporter membrane protein TERM 710 724901 - 724939 + F 100 -10.6 -5.68438 | gap 1, opp_overlap 724900 ATGGACACAACTTAT TGCTATGAAAGGCACTT TATTAT AAG-GCTTTTCATAGCA TTTTTTATTTAATGA USA300HOU_0671 725114 - 726082 + | glycerone kinase USA300HOU_0672 726124 - 726708 + | glycerone kinase USA300HOU_0673 726701 - 727063 + | hypothetical protein USA300HOU_0674 727179 - 727676 + | hypothetical protein TERM 711 728850 - 728836 - g 73 -8.6 -3.19642 | ACTAGCATTGATCAA CTTTGC ATT GCAAAG TGAATATCCAACTAT USA300HOU_0675 728219 - 729199 + | hypothetical protein TERM 712 729258 - 729290 + F 73 -3.5 -5.28414 | gap 1, opp_overlap 729258, overlap 729252 GTTTTAACCTTAAAA GCAATTCGTCTCTA CTCTTA TCG-GGCGAATTGC TTTTTATATTTATTC TERM 713 730093 - 730071 - g 73 -7 -3.94276 | overlap 730060 AAAACATTTCACAAA TGTCGACAGT AAA ACAATCGACA AAAAATTATCCACCA USA300HOU_0676 729350 - 730393 + | peptidase USA300HOU_0677 730722 - 731150 + | hypothetical protein TERM 714 731216 - 731161 - T 87 -10.9 -3.24158 | gap 1, opp_overlap 731161 731166, overlap 731165 ACTAAACAACATATA TAAAGCACCACTAAT-CGTAGTTGAT AGTTA ATCAATTACACATTAGTGGTGTTTTA TTTTGAATTTAAATT TERM 715 731161 - 731216 + T 100 -13.1 -4.37198 | gap 1, opp_overlap 731161 731165, overlap 731166 ACTAAACAACATATA TAAAGCACCACTAAT-CGTAGTTGAT AGTTA ATCAATTACACATTAGTGGTGTTTTA TTTTGAATTTAAATT TERM 716 731212 - 731165 - T 77 -7.3 -4.23853 | gap 1, opp_overlap 731161 731166, overlap 731161 AACAACATATATAAA GCACCACTAAT-CGTAGTTGAT AGTTA ATCAATTACACATTAGTGGTGT TTTATTTTGAATTTA TERM 717 731166 - 731211 + T 100 -10.8 -5.14698 | gap 1, opp_overlap 731165 731161, overlap 731161 ACAACATATATAAAG CACCACTAAT-CGTAGTTGAT AGTTA ATCAATTACACATTAGTGGTG TTTTATTTTGAATTT USA300HOU_0678 731865 - 731359 - | hypothetical protein USA300HOU_0679 731978 - 732901 + | hypothetical protein USA300HOU_0680 732917 - 733591 + | response regulator TERM 718 734592 - 734631 + G 100 -9.4 -4.78572 | opp_overlap 734596 AATGAAATTGTTGAA CGCATGTCGGAAGTGACA AATT TGTCATTTTAAACATGCG TTTTGTTACTTAGAA USA300HOU_0681 733584 - 734624 + | sensor histidine kinase TERM 719 734994 - 734978 - g 83 -2.3 -5.79588 | overlap 734981 TTAAAAGGAAAAAAA TTAGAAA AGC TTTCAAA CAAGGAATTATCTGA vraF 734768 - 735529 + | ABC transporter ATP-binding protein TERM 720 736525 - 736512 - g 79 -5.3 -5.20606 | AAAGACCAACAAAAA GCTAA TCAA TTAGC AAGTGAATTAAACAA vraE 735519 - 737408 + | ABC transporter ATP-binding protein TERM 721 737421 - 737467 + F 86 -7.5 -5.20333 | gap 1 TAAAATATACAGATG GCTTTCAGTAGAG-TAGTGGAT TCGG ATTCACGAACTATACTGGAAGC TTTTTATTATAAATG TERM 722 737976 - 737960 - f 73 -8.1 -3.43081 | overlap 737958 ATATAAGGGCAAATA CAGTAAA TTG TTTACTG TGAGGCATTTTTGAA USA300HOU_0684 738133 - 738750 + | hypothetical protein TERM 723 739019 - 739039 + G 93 -10.5 -3.98804 | GATTAGTTGTTGTGT TAGCTGCAA TAC TTGCGGCTA TTATTTGGAATTTAG USA300HOU_0685 738766 - 739773 + | inorganic phosphate transporter TERM 724 739838 - 739786 - T 76 -5 -5.13343 | opp_overlap 739791, overlap 739791 TAATTGAAAATAAAA CTAAACTGAACTTCAGTATCACAA ACATA TGGTGGTATTGAAGTTCAGTTTTT TATGTAAGTAGATAA TERM 725 739791 - 739833 + T 100 -13.7 -5.38047 | opp_overlap 739786 739791 GAAAATAAAACTAAA CTGAACTTCAGTATCACAA ACATA TGGTGGTATTGAAGTTCAG TTTTTTATGTAAGTA TERM 726 739833 - 739791 - T 100 -9.3 -4.41486 | opp_overlap 739791, overlap 739786 GAAAATAAAACTAAA CTGAACTTCAGTATCACAA ACATA TGGTGGTATTGAAGTTCAG TTTTTTATGTAAGTA TERM 727 740295 - 740281 - T 70 -5.8 -4.25104 | overlap 740287 TTTTTTGTACCAAAA TGAAAA TTT TTTTCA AAAATAAAAAACTAG TERM 728 740336 - 740307 - T 100 -11.7 -5.93252 | gap 1, opp_overlap 740307 740315 TTCAAAAATAAAAAA CTAGCAATCTCACA TGA TGTGA-ATTGCTAG TATATATCAGTACAA TERM 729 740307 - 740336 + T 90 -11.7 -3.0094 | gap 1, opp_overlap 740307, overlap 740315 TTCAAAAATAAAAAA CTAGCAATCTCACA TGA TGTGA-ATTGCTAG TATATATCAGTACAA USA300HOU_0686 741158 - 740361 - | LysM domain-containing protein USA300HOU_0687 741519 - 742163 + | hypothetical protein TERM 730 743781 - 743757 - f 70 -5.9 -4.24075 | ATTGATGAAGACAAA TTTGAAACA CCTAAAT TGTTTCAAA CGGTTATTCAAATAA sarX 745089 - 745514 + | hypothetical protein TERM 731 745524 - 745557 + F 70 -3.9 -5.04601 | gap 1, opp_overlap 745525, overlap 745525 ATTTAATTGAAATTG AGTGTCGA-AAGCATA GAA TTTGCTTATCGGCACA TTTTTAATTTATACA USA300HOU_0690 745704 - 746420 + | hypothetical protein USA300HOU_0691 746420 - 746893 + | hypothetical protein TERM 732 746904 - 746946 + F 100 -9.4 -5.09685 | AATAAAAGTGATCAA TGAAGTGGTTTGAAGGTT GTTAATA AACCTTTGAGTCACTTCA TTTTTATATGTATTC USA300HOU_0692 746982 - 747101 + | hypothetical protein USA300HOU_0693 747246 - 747890 + | hypothetical protein TERM 733 748183 - 748165 - g 83 -2.4 -5.89921 | ATCAGAACAAAAAAA CAATTGAT TAC AACAACTG AAGGAACAATGATTA TERM 734 748479 - 748493 + G 84 -5.8 -5.26119 | TAACACACATTTATT TAATGA TGA TCATTA TTTTATTTTTCCAAA USA300HOU_0694 748006 - 748872 + | LysR family transcriptional regulator TERM 735 749024 - 748996 - g 77 -9 -3.61646 | gap 1, overlap 748998 AAGGGGACAAAGGAA TACAGTTGGATGC TAAC GCA-CCAACTGCA TAAGAGCCCCTAATT TERM 736 749022 - 748998 - g 79 -9.4 -3.37915 | gap 1, overlap 748996 GGGGACAAAGGAATA CAGTTGGATGC TAAC GCA-CCAACTG CATAAGAGCCCCTAA USA300HOU_0695 748932 - 749027 + | hypothetical protein TERM 737 749515 - 749534 + G 80 -5 -5.33405 | CCAACACAGTATTAC GTTCAATG TTCT CATTGGGC TTTTTATTTGGTCCA USA300HOU_0696 749073 - 750293 + | major facilitator superfamily sugar:cation symporter TERM 738 750715 - 750748 + G 75 -6.9 -4.09519 | opp_overlap 750723, overlap 750720 AACAAGTAGTATAGC TCAAGCAATCATTAT GTTT ATAATGATTGTATGG TTCTTTATAGATGCT TERM 739 750720 - 750743 + G 77 -9.8 -3.08696 | opp_overlap 750723, overlap 750715 GTAGTATAGCTCAAG CAATCATTAT GTTT ATAATGATTG TATGGTTCTTTATAG USA300HOU_0697 750290 - 750778 + | hypothetical protein USA300HOU_0698 751566 - 750877 - | hypothetical protein TERM 740 751052 - 751036 - G 71 -3 -5.09685 | overlap 751028 751038 GAATACATAGAAAAA TCCTAC AATTA GTAGAA TGATTGCTAAATAGG USA300HOU_0699 751693 - 752136 + | GNAT family acetyltransferase USA300HOU_0700 752203 - 752598 + | hypothetical protein USA300HOU_0701 752736 - 753035 + | hypothetical protein TERM 741 753050 - 753079 + F 78 -4.4 -5.4505 | overlap 753062 AACTGCTATCTAAAA CGCAAAGTTGAT CAAAAT ATCGATTTTGTG TTTTTTATTGAGAAA USA300HOU_0702 753115 - 753657 + | GNAT family acetyltransferase TERM 742 753676 - 753733 + T 100 -11.8 -5.09426 | opp_overlap 753683, overlap 753679 ATTTATACATAAGCG T-AACAAACACCCCTAACATTGTTTAGC TGAT GATAA-CAATATTAGGGGTGTTTGTTTA TTTTTTAACCTTAGA TERM 743 753679 - 753729 + T 100 -15.1 -5.05153 | gap 1, opp_overlap 753683, overlap 753676 TATACATAAGCGTAA CAAACACCCCTAACATTGTTTAGC TGAT GATAA-CAATATTAGGGGTGTTTG TTTATTTTTTAACCT TERM 744 753725 - 753683 - T 100 -12.3 -4.21989 | gap 1, opp_overlap 753679 753676 CATAAGCGTAACAAA CACCCCTAACATTGTTTAGC TGAT GATAA-CAATATTAGGGGTG TTTGTTTATTTTTTA USA300HOU_0703 754319 - 753753 - | hypothetical protein TERM 745 753929 - 753909 - G 83 -6.9 -4.66609 | opp_overlap 753894 TAGTGGATTGAAAAA GCCATTAAT ATT ATAAATGGC AATAGGCTTTTCATG USA300HOU_0704 754779 - 754321 - | hypothetical protein TERM 746 754753 - 754704 - G 100 -11.7 -4.8543 | gap 1 TAATTGTCACAAAAA TGCCTGTCTCAGTTGTTAAATCTA TAA TAGAATCAACAACAG-GACAAGCA TCTCCATCAATAATA USA300HOU_0705 755465 - 754782 - | hypothetical protein TERM 747 755617 - 755588 - R 90 -8 -5.31072 | opp_overlap 755588 AGAAGACAATAAAAA CTGCCAATCAAG TGATTC CTTAATTGACAG TCTATATTTTAAAAG bacA 756512 - 755637 - | undecaprenyl pyrophosphate phosphatase USA300HOU_0707 756725 - 758356 + | ABC transporter ATP-binding protein USA300HOU_0708 758353 - 760026 + | ABC transporter ATP-binding protein TERM 748 760063 - 760032 - T 100 -12.4 -5.66684 | opp_overlap 760032 TAATGCATAAAAAAA CTGCTTGATAGGCT AAGA AACCTTTCAAGCAG TTTTTTAACTAACAA TERM 749 760032 - 760063 + T 100 -10.2 -5.08824 | opp_overlap 760032 TAATGCATAAAAAAA CTGCTTGATAGGCT AAGA AACCTTTCAAGCAG TTTTTTAACTAACAA USA300HOU_0709 760596 - 760153 - | MarR family transcriptional regulator cobW2 760823 - 761749 + | cobalamin (vitamin B12) biosynthesis protein USA300HOU_0711 761852 - 762760 + | aldo/keto reductase USA300HOU_0712 762795 - 763082 + | hypothetical protein TERM 750 763113 - 763093 - f 77 -5.5 -4.93696 | opp_overlap 763093, overlap 763073 TTTAAACATTAAAAA GAGACTATC TAC AATAATCTC ATTTGCATTTTATCT TERM 751 763395 - 763380 - g 71 -3.3 -5.19328 | ATGTCAGAAGAAAAA CATGT AGTTGA ACATG AACAACAAAAGAAAG TERM 752 763751 - 763778 + G 78 -7 -4.4521 | overlap 763753 TAGTGGATTTGCAAC TTCAGCTGTAGC TCTC GTTGCAGCTGCA TTATTTTTGGCTGCT TERM 753 763753 - 763776 + G 75 -9.6 -2.54902 | overlap 763751 GTGGATTTGCAACTT CAGCTGTAGC TCTC GTTGCAGCTG CATTATTTTTGGCTG USA300HOU_0713 763365 - 764918 + | DASS family divalent anion:sodium (Na+) symporter phrB 765004 - 766377 + | deoxyribodipyrimidine photo-lyase TERM 754 766487 - 766448 - T 81 -8.1 -4.2772 | opp_overlap 766451, overlap 766451 CTTAAGCAATATAAA TAAGCCAATTTCTATTA TTGATG TGATAGAAATTGGCTTT CCTCAAATATATAAG TERM 755 766484 - 766451 - T 91 -9.8 -4.24283 | opp_overlap 766451, overlap 766448 AAGCAATATAAATAA GCCAATTTCTATTA TTGATG TGATAGAAATTGGC TTTCCTCAAATATAT TERM 756 766451 - 766484 + T 100 -12.7 -3.75933 | opp_overlap 766451 766448 AAGCAATATAAATAA GCCAATTTCTATTAT TGAT GTGATAGAAATTGGC TTTCCTCAAATATAT USA300HOU_0715 766816 - 766532 - | hypothetical protein USA300HOU_0716 767430 - 766813 - | hypothetical protein USA300HOU_0717 768038 - 767616 - | hypothetical protein norA 768247 - 769413 + | major facilitator transporter TERM 757 769417 - 769407 - f 70 -4 -5.011 | ATTGAAAGAACAAAA TATG TAG CATA AGTATTTTGGTGTAT TERM 758 769893 - 769875 - g 74 -3.2 -5.35224 | opp_overlap 769879, overlap 769870 CTTATAAAAAGAAAA TGGATATT CTC AATATTCA TACTGCTAAAGCATC USA300HOU_0719 769706 - 770158 + | hypothetical protein TERM 759 770168 - 770192 + F 85 -5.8 -5.46706 | AAATAATAGATGGAA CAGTGTATTC TAATT GGATATACTG TTTTTATTTTGCAAT USA300HOU_0720 770332 - 770814 + | transcriptional regulator TERM 760 770899 - 770844 - f 100 -12.8 -3.03619 | opp_overlap 770847, overlap 770847 770867 AAGTATGGGGCAAGA TTAGGAGTGTGACAGAGATGAAATTT TTAT AAAATTCATTTCTGCCACACTCCTTT TTGATTGAATTAGCA TERM 761 770847 - 770896 + F 100 -18.9 -4.90013 | opp_overlap 770844 770847 770867 TATGGGGCAAGATTA GGAGTGTGACAGAGATGAAATTT TTAT AAAATTCATTTCTGCCACACTCC TTTTTGATTGAATTA TERM 762 770896 - 770847 - f 100 -18.9 -2.74192 | opp_overlap 770847, overlap 770844 770867 TATGGGGCAAGATTA GGAGTGTGACAGAGATGAAATTT TTAT AAAATTCATTTCTGCCACACTCC TTTTTGATTGAATTA USA300HOU_0721 771067 - 771828 + | DeoR family transcriptional regulator TERM 763 771857 - 771867 + G 71 -5.4 -4.60889 | overlap 771865 TTTCAATCCTTCAAT TGAC TAT GTCA TTTTTACGAATGATT fruK 771825 - 772745 + | 1-phosphofructokinase fruA 772751 - 774709 + | PTS family fructose/mannitol (fru) porter component IIABC TERM 764 774825 - 774866 + F 95 -7.7 -5.63236 | gap 1, opp_overlap 774825 ACAAAGCTGTAAAAA CACTTTC-TATTAATTCA GTTTTTA TGAATTGATATGAAAGTG TTTTTATTTTTAGAT TERM 765 774866 - 774825 - f 73 -5.5 -4.6526 | gap 1, opp_overlap 774825 ACAAAGCTGTAAAAA CACTTTC-TATTAATTCA GTTTTTA TGAATTGATATGAAAGTG TTTTTATTTTTAGAT nagA 775017 - 776198 + | N-acetylglucosamine-6-phosphate deacetylase USA300HOU_0725 776419 - 777768 + | CBS domain-containing protein TERM 766 777781 - 777820 + F 95 -8.1 -5.47218 | opp_overlap 777784, overlap 777784 TAGATATTAATATAT AAACCAACTAAGAATGA TTTAAT TCATTTTTGGTTGGTTA TTTTTTTGACTAAAA TERM 767 777784 - 777817 + F 100 -9.8 -4.8236 | opp_overlap 777784, overlap 777781 ATATTAATATATAAA CCAACTAAGAATGA TTTAAT TCATTTTTGGTTGG TTATTTTTTTGACTA USA300HOU_0726 777990 - 778829 + | dehydrogenase USA300HOU_0727 778961 - 779944 + | glycosyltransferase TERM 768 779946 - 779930 - T 71 -6.7 -3.96188 | AAGGATACCCATAAA GTTTATT CTA AATAAAC AAAAAAAGAAGCCCT TERM 769 779977 - 779954 - T 95 -7.4 -6.11392 | opp_overlap 779954 AAATAAACAAAAAAA GAAGCCCTCA TTAA TGGGAGCTTC TTTTTAGTCTTTGCA TERM 770 779954 - 779977 + T 85 -7.4 -4.93696 | opp_overlap 779954 AAATAAACAAAAAAA GAAGCCCTCA TTAA TGGGAGCTTC TTTTTAGTCTTTGCA saeS 781071 - 780016 - | sensor histidine kinase SaeS saeR 781757 - 781071 - | response regulator SaeR USA300HOU_0730 782205 - 781732 - | hypothetical protein USA300HOU_0731 782987 - 782547 - | hypothetical protein TERM 771 782825 - 782837 + g 76 -4.1 -5.19275 | TTTTAGAACTGAATG TACCT GTT AGGTG TTTTGTTTTATCAGT TERM 772 783260 - 783205 - R 100 -12.3 -3.60214 | opp_overlap 783207, overlap 783207 783215 ATCTGAACTAGATAA CACTATAAAACACTTCTGATATTTT GAACTA AGAATATCAGAAGTGTTTAATAGTT TTGGTATTAAAATTT TERM 773 783207 - 783258 + r 100 -17.1 -4.43012 | opp_overlap 783205 783207 783215 CTGAACTAGATAACA CTATAAAACACTTCTGATATTTT GAACTA AGAATATCAGAAGTGTTTAATAG TTTTGGTATTAAAAT TERM 774 783258 - 783207 - R 100 -14.9 -3.376 | opp_overlap 783207, overlap 783205 783215 CTGAACTAGATAACA CTATAAAACACTTCTGATATTTT GAACTA AGAATATCAGAAGTGTTTAATAG TTTTGGTATTAAAAT TERM 775 783250 - 783215 - R 100 -10.7 -4.56629 | opp_overlap 783207, overlap 783207 783205 GATAACACTATAAAA CACTTCTGATATTTT GAACTA AGAATATCAGAAGTG TTTAATAGTTTTGGT USA300HOU_0732 783851 - 783267 - | hypothetical protein exsD 784663 - 783950 - | organic radical-activating protein USA300HOU_0734 785086 - 784667 - | 6-pyruvoyltetrahydropterin synthase exsB 785756 - 785088 - | ExsB family post-transcriptional regulator TERM 776 785864 - 785842 - H 93 -5.6 -6.14618 | TATAAAATAAAAAAA GCCTATCTCC ATA AAAGATAGAC GAAAGAAATGGGTTG pabA 786107 - 786700 + | anthranilate synthase pabB 786675 - 787835 + | anthranilate synthase pabC 787835 - 788443 + | aminodeoxychorismate lyase USA300HOU_0739 788509 - 788715 + | hypothetical protein USA300HOU_0740 788803 - 789513 + | hypothetical protein USA300HOU_0741 789497 - 790501 + | hypothetical protein USA300HOU_0742 790975 - 792915 + | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase TERM 777 792956 - 792930 - f 100 -12.4 -3.47431 | opp_overlap 792930, overlap 792926 792924 ATATCTAAACACGAA CTCGGATTGATA AAA TATCAATCCGGG TTTTTATTATGTTCT TERM 778 792930 - 792956 + F 100 -14.6 -5.31072 | opp_overlap 792926 792924 792930 ATATCTAAACACGAA CTCGGATTGATA AAA TATCAATCCGGG TTTTTATTATGTTCT USA300HOU_0743 793186 - 795069 + | ABC transporter ATP-binding protein TERM 779 796558 - 796548 - g 76 -4 -5.27477 | ACTTCAATTAAAAAA TTAC TCA GTAA TGAAGTAGAAGTATT recQ1 795081 - 796862 + | ATP-dependent helicase RecQ TERM 780 796869 - 796900 + F 86 -5.3 -5.53288 | gap 1 AAAGTATAGTGAAGA CACCTAGT-AAGCA TTCCT TGTTTTACTGGGTG TTTTTTTGAATTCAA TERM 781 797483 - 797473 - g 74 -3.2 -5.36364 | overlap 797480 TGAAAAATATAAAAA CAGA AAA CCTG ATGAATTGTCAGGGG TERM 782 797496 - 797480 - g 73 -3.7 -5.02287 | overlap 797473 TATAAAAACAGAAAA CCTGA TGAATTG TCAGG GGGGCAACGACAACG USA300HOU_0745 797084 - 798061 + | glycine betaine/carnitine/choline ABC transporter ATP-binding protein TERM 783 799476 - 799462 - g 72 -2.9 -5.22137 | AACTAGAAAACAAAA TATCT GATGA AGATA TGCAAATGATGAACT USA300HOU_0746 798054 - 799568 + | glycine betaine/carnitine/choline ABC transporter membrane protein TERM 784 799573 - 799621 + F 84 -9.1 -3.85256 | opp_overlap 799572 799576, overlap 799576 TAATCAAATAACGAC CAACGCCACATAAGATGCG TAACACCAAAT TATATCTTATGTGGCGTTG TTATATTTAAATCTA hisC1 799808 - 800866 + | histidinol-phosphate transaminase TERM 785 800941 - 800964 + F 72 -6.8 -4.15044 | opp_overlap 800947, overlap 800943 800947 AACTTGCATTGTCTG TAGAAATTGG GAAT CCAATTTCTC TTTGTTGGGGCCCCG TERM 786 800943 - 800962 + F 81 -9.4 -3.6761 | opp_overlap 800947, overlap 800941 800947 CTTGCATTGTCTGTA GAAATTGG GAAT CCAATTTC TCTTTGTTGGGGCCC TERM 787 801020 - 801008 - f 90 -7.7 -5.1925 | opp_overlap 801007 CTAGAATTGAAAAAA GCTTG TTA CAAGC GCATTTTCGTTCAGT USA300HOU_0748 801217 - 801759 + | hypothetical protein TERM 788 801915 - 801896 - T 76 -9.4 -3.09273 | opp_overlap 801900, overlap 801900 GGGCCCCAACATAGA GAAATTGG AACG CCAATTTC TACAGACAATGCAAG TERM 789 801947 - 801930 - T 93 -11.3 -3.27907 | overlap 801925 CTACAGACAATGCAA GTTGGGG TGGG CCCCAAC ATAAAGAAATACTTT TERM 790 801987 - 802007 + T 100 -12.7 -3.61527 | overlap 801984 801982 AATTAGTATTTCTTA TGCATGAGT GTA ACTCATGCA TTCATATTTTTAAGT TERM 791 802134 - 802176 + T 100 -8.8 -5.28826 | gap 2, opp_overlap 802134 TCTTATTATTATAAA TCGGATGAATGTGTTAATCT ATGGC AGATTA-CACGT-CATCCGA TTTTTTATAGAATTT TERM 792 802176 - 802134 - T 74 -7.3 -3.99324 | gap 2, opp_overlap 802134 TCTTATTATTATAAA TCGGATGAATGTGTTAATCTA TGG CAGATT-ACACGT-CATCCGA TTTTTTATAGAATTT dgkA1 803300 - 802383 - | diacylglycerol kinase USA300HOU_0750 803391 - 803492 + | hypothetical protein TERM 793 803521 - 803546 + T 100 -9.1 -5.15969 | opp_overlap 803521 AAACCTATAAAAAAA CAGTAAGCCAT TTAA ATGACTTACTG TTTTTTGAATTAGGC TERM 794 803546 - 803521 - T 100 -11.3 -5.68039 | opp_overlap 803521 AAACCTATAAAAAAA CAGTAAGCCAT TTAA ATGACTTACTG TTTTTTGAATTAGGC USA300HOU_0751 805075 - 803570 - | POT family proton (H+)-dependent oligopeptide transporter TERM 795 805185 - 805175 - R 85 -2.6 -5.89659 | opp_overlap 805175 ACAAAAAAATAAAAA TATT GAG AATA TTCTGTTATTAAGCG TERM 796 805398 - 805362 - R 100 -13.3 -4.99134 | opp_overlap 805362 ATGCTAAATGAAAAA CACACCAATAAGTTA GGAAAAT CAACTTATTGGTGTG TTTATTAAATGATAC TERM 797 805362 - 805398 + r 100 -12.6 -4.21974 | gap 1, opp_overlap 805362 ATGCTAAATGAAAAA CACACCAATAAGTTAGG AAAA TC-AACTTATTGGTGTG TTTATTAAATGATAC USA300HOU_0752 805916 - 805416 - | 7-cyano-7-deazaguanine reductase USA300HOU_0753 806802 - 805936 - | DMT superfamily drug/metabolite transporter TERM 798 807241 - 807254 + H 70 -5.3 -4.53303 | opp_overlap 807239 807241 GTGAAACGAAAAAGA CACAA TATC TTGTG TTTTGTATGCAAATG TERM 799 807433 - 807490 + H 100 -13.3 -2.6953 | gap 1, opp_overlap 807432 807433, overlap 807433 TTCAACCCATATAAG CTACT-ATTTTCTCAAATATAAATCTAT GCA ATTGGTTTACATTTGAGAAAATAAGTAG CTTCATTATAGTTAA TERM 800 807490 - 807433 - H 100 -13.3 -2.72739 | gap 1, opp_overlap 807433 807433, overlap 807432 TTCAACCCATATAAG CTACT-ATTTTCTCAAATATAAATCTAT GCA ATTGGTTTACATTTGAGAAAATAAGTAG CTTCATTATAGTTAA nrdI 807603 - 808001 + | ribonucleotide reductase stimulatory protein nrdE 807964 - 810069 + | ribonucleotide-diphosphate reductase subunit alpha TERM 801 810088 - 810140 + F 87 -11 -3.36059 | gap 2, opp_overlap 810094 810097, overlap 810086 TTAAATGTTGAAAAT GACA-AACAG-CTAATCATCTGCT CTGAATT AGCAGATGATTAGACTGCTATGTC TGTATTTGTCAATTA TERM 802 810133 - 810094 - f 100 -13.2 -4.208 | gap 1, opp_overlap 810088 810086, overlap 810097 GTTGAAAATGACAAA CAG-CTAATCATCTGCT CTGAATT AGCAGATGATTAGACTG CTATGTCTGTATTTG TERM 803 810129 - 810097 - f 100 -13.7 -2.80614 | opp_overlap 810088 810086, overlap 810094 GAAAATGACAAACAG CTAATCATCTGCT CTGAATT AGCAGATGATTAG ACTGCTATGTCTGTA nrdF 810187 - 811158 + | ribonucleotide-diphosphate reductase subunit beta USA300HOU_0757 811291 - 811395 + | hypothetical protein TERM 804 811545 - 811561 + F 78 -9.5 -3.37164 | overlap 811543 AAATTATCACTTCCA CATGAGT TTT ACTCATG TATTCCTATTTTTAA USA300HOU_0758 811672 - 811827 + | hypothetical protein USA300HOU_0759 811824 - 812837 + | iron (Fe+3) ABC transporter membrane protein USA300HOU_0760 812824 - 813780 + | iron (Fe+3) ABC transporter membrane protein USA300HOU_0761 813777 - 814538 + | iron (Fe+3) ABC transporter ATP-binding protein TERM 805 815623 - 815586 - g 73 -8.1 -3.63901 | gap 1, opp_overlap 815590, overlap 815584 815590 815598 AGCAATTAAAGAAGA CAAAGTA-TATAATTTAG ATC CTAAATTATGGTACTTTG CAGCTGGATCAACTA USA300HOU_0762 814657 - 815685 + | iron (Fe+3) ABC transporter binding protein TERM 806 815689 - 815739 + T 100 -16.5 -3.53091 | opp_overlap 815694, overlap 815694 GTTGTAAAATAATTT TAAAAGAGGGGAACAATGGTTAA AGGTC TTAATCATTGCTCCCCTCTTTTC TTTAAAAAAGGAAAT TERM 807 815734 - 815694 - T 100 -17.1 -4.26634 | opp_overlap 815689 815694 AAAATAATTTTAAAA GAGGGGAACAATGGTTAAA GGT CTTAATCATTGCTCCCCTC TTTTCTTTAAAAAAG TERM 808 815694 - 815734 + T 100 -16.4 -4.86731 | opp_overlap 815694, overlap 815689 AAAATAATTTTAAAA GAGGGGAACAATGGTTAA AGGTC TTAATCATTGCTCCCCTC TTTTCTTTAAAAAAG USA300HOU_0763 816322 - 816002 - | hypothetical protein murB 817257 - 816334 - | UDP-N-acetylmuramate dehydrogenase USA300HOU_0765 817375 - 817247 - | hypothetical protein USA300HOU_0766 817902 - 817384 - | hypothetical protein TERM 809 818041 - 818055 + G 84 -6.4 -5.02323 | AAAAAATTGTTATTA TCGCTG TTT TAGCGA TTTTATTTGTAGTAA USA300HOU_0767 818022 - 818900 + | hypothetical protein TERM 810 818913 - 818933 + F 70 -6.3 -4.0616 | opp_overlap 818892 TAACTATAATCATTT TTCAAAGTT AAA AATTTTGAA TTTATGGTTAACATG TERM 811 819132 - 819111 - g 70 -4.6 -4.7261 | ATTGAGGAAAATAAA TATGTTTT TGTATT AAAACATA GTGAAACTTGTCCAA USA300HOU_0768 819054 - 819374 + | hypothetical protein USA300HOU_0769 819799 - 820923 + | glycerate kinase TERM 812 821029 - 821060 + T 100 -10.3 -5.10968 | opp_overlap 821029 AAAAAATATGAAAAA TCACGCTATCATT GCACTG AATGTTAGCGTGA TTTTTATATATTAAT TERM 813 821060 - 821029 - T 100 -10.3 -5.04265 | opp_overlap 821029 AAAAAATATGAAAAA TCACGCTATCATT GCACTG AATGTTAGCGTGA TTTTTATATATTAAT pepT 822338 - 821112 - | peptidase T TERM 814 821443 - 821459 + g 81 -8.1 -4.1673 | opp_overlap 821456 GCATTGATATCGTCA CGTATTT CTA AAATACG TTTCTTACGCAATTC TERM 815 821469 - 821480 + g 74 -3 -5.32882 | opp_overlap 821456 AATACGTTTCTTACG CAAT TCGA ATTG TTTTTTATCATGATC USA300HOU_0771 822846 - 822352 - | hypothetical protein USA300HOU_0772 823625 - 822864 - | hypothetical protein TERM 816 823758 - 823809 + r 100 -10 -4.6265 | gap 1, opp_overlap 823758 TTTAAATAAGAAAAA CTGTTAATC-TTTGCTATTAT ACTATGATTTA ATAATAGCAAAGGATTAACAG TTTTGTCGTTGTTAT TERM 817 823809 - 823758 - R 100 -10 -5.38549 | gap 1, opp_overlap 823758 TTTAAATAAGAAAAA CTGTTAATC-TTTGCTATTAT ACTATGATTTA ATAATAGCAAAGGATTAACAG TTTTGTCGTTGTTAT USA300HOU_0773 824891 - 823821 - | diguanylate cyclase TERM 818 824926 - 824945 + H 77 -8 -4.11938 | ATTGACCACTAGCTA TTGTAAGT GAAA ACTTACAA TTTGTCATTAGTTTA USA300HOU_0774 825209 - 826264 + | hypothetical protein USA300HOU_0775 827075 - 826434 - | hypothetical protein TERM 819 827398 - 827376 - g 83 -7 -4.78839 | AATTTTATAATAAAA TGGCATCGTC TCA AACGATTCCA ACAACAAGCCAACCA USA300HOU_0776 827219 - 828085 + | hypothetical protein USA300HOU_0777 828449 - 829531 + | superfamily II DNA/RNA helicase ComFA USA300HOU_0778 829521 - 830198 + | superfamily II DNA/RNA helicase ComFC USA300HOU_0779 830259 - 830831 + | ribosome-associated inhibitor protein Y TERM 820 830844 - 830867 + F 100 -11.8 -5.31275 | opp_overlap 830844 830865 TAAATTAAGTTTAAA GCACTTGTGT TTTT GCACAAGTGC TTTTTTATACTCCAA TERM 821 830867 - 830844 - f 90 -11.1 -3.70505 | opp_overlap 830844, overlap 830865 TAAATTAAGTTTAAA GCACTTGTG TTTTTG CACAAGTGC TTTTTTATACTCCAA TERM 822 833038 - 833012 - g 70 -3.6 -4.94902 | GAATCAGCACAAAAA CGTGTAGAAGGT AAT AACTTCGACGCG CGTAAACGTATCTTA secA1 831245 - 833776 + | preprotein translocase subunit SecA USA300HOU_0781 833818 - 833922 + | hypothetical protein TERM 823 835057 - 835041 - g 76 -4.4 -5.05606 | overlap 835043 GCGAACAAAAAGAAA TCGGCT GGGGA AGCCAA ATTAGATCATATGTT prfB 834326 - 835201 + | peptide chain release factor 2 TERM 824 835209 - 835245 + F 90 -7.3 -5.42259 | opp_overlap 835208 835216, overlap 835216 ACGATTAATATATAT TTTAAAACCGAGGCTCT AAA AGGGCGTCGGTTTTTGG TTTTTTTAAAGGTAG TERM 825 835216 - 835238 + F 100 -9.8 -5.31158 | opp_overlap 835208 835216, overlap 835209 ATATATATTTTAAAA CCGAGGCTCT AAA AGGGCGTCGG TTTTTGGTTTTTTTA TERM 826 835238 - 835216 - f 77 -7.6 -4.18802 | opp_overlap 835216 835209, overlap 835208 ATATATATTTTAAAA CCGAGGCTCT AAA AGGGCGTCGG TTTTTGGTTTTTTTA TERM 827 835621 - 835650 + G 74 -3.5 -5.22039 | opp_overlap 835621, overlap 835622 CAAGATGAAAAAATC TCTTACAGTGACG GTTT CGTCAGTGTTAGC TTTTTTAGCTTTAAA TERM 828 835622 - 835649 + G 70 -7 -3.72139 | opp_overlap 835621, overlap 835621 AAGATGAAAAAATCT CTTACAGTGACG GTTT CGTCAGTGTTAG CTTTTTTAGCTTTAA TERM 829 835850 - 835860 + G 74 -6.8 -4.35327 | TATTCATACAATCCT GGTG TAA CACC TTTAATTTTTCCTGG TERM 830 835977 - 835963 - g 70 -4.2 -4.75776 | overlap 835976 AAGCCAAGCTAAAAA GGTAGT AAA ACAACC TGTACAACAAGCATC USA300HOU_0783 835610 - 836449 + | hypothetical protein TERM 831 836506 - 836472 - f 76 -10.1 -2.86349 | opp_overlap 836472, overlap 836469 ATCAAGACAAGACTA TCCTCTTAGCCTGTT TAAGT AACAGGTTGAGAGGA TTTTTTGGTATCATT TERM 832 836472 - 836506 + F 100 -14.5 -5.2422 | opp_overlap 836472 836469 ATCAAGACAAGACTA TCCTCTTAGCCTGTT TAAGT AACAGGTTGAGAGGA TTTTTTGGTATCATT USA300HOU_0784 836623 - 837273 + | HAD family phosphatase USA300HOU_0785 837270 - 837506 + | hypothetical protein TERM 833 837615 - 837641 + F 100 -8.9 -5.47159 | opp_overlap 837618 837621 CGATTTGATTTAAGG CAAGCATAGTT AGCAC AACTATGTTTG TTTTTCTTTGTTCGA uvrB 837775 - 839760 + | excinuclease ABC subunit B uvrA 839768 - 842614 + | excision endonuclease subunit UvrA TERM 834 842617 - 842663 + F 74 -8.3 -3.58162 | opp_overlap 842617 842623, overlap 842623 TGAAGATAAATAAGA TTAAAAGAAGTGAAGGATG TTATAAATT TATCCTTCGCTTCTTTTTA TTAATTTAGTAATGA TERM 835 842623 - 842657 + F 86 -7.3 -5.24551 | opp_overlap 842623 842617, overlap 842617 TAAATAAGATTAAAA GAAGTGAAGGATG TTATAAATT TATCCTTCGCTTC TTTTTATTAATTTAG TERM 836 842872 - 842852 - f 100 -12.7 -3.61527 | overlap 842848 ACTTAAAAATAGGAA TGCATGAGT GCA ACTCATGCA TAAGAAATACTAATT TERM 837 842943 - 842961 + F 70 -6.1 -4.1891 | CTTGCATTGTTTGTA GAATTTC TTTTC GAAATTC TTTATGTTGGGGCCC TERM 838 842998 - 843016 + F 70 -6.1 -4.1891 | CTTGCATTGTTTGTA GAATTTC TTTTC GAAATTC TTTATGTTGGGGCCC hprK 843276 - 844208 + | HPr kinase/phosphorylase lgt 844214 - 845053 + | prolipoprotein diacylglyceryl transferase USA300HOU_0790 845061 - 845546 + | acetyltransferase TERM 839 845846 - 845872 + G 77 -8.8 -3.58176 | opp_overlap 845848 845853, overlap 845848 845853 ACATTGAAGTTAACG AACCAAACAAGG CAT TCTTGTTTGGTA TTAATTATGTTATTG TERM 840 845870 - 845848 - g 87 -10.7 -3.40788 | opp_overlap 845848 845846 845853, overlap 845853 ATTGAAGTTAACGAA CCAAACAAG GCATT CTTGTTTGG TATTAATTATGTTAT TERM 841 845848 - 845870 + G 89 -11.4 -3.34812 | opp_overlap 845848 845853, overlap 845846 845853 ATTGAAGTTAACGAA CCAAACAAGG CAT TCTTGTTTGG TATTAATTATGTTAT TERM 842 845976 - 845960 - g 74 -5.9 -4.49364 | opp_overlap 845961 845966 AAAGTGAAGAACAAA TTGAACT TGA AGCTCAA TTGTTTGTAGTTCAA USA300HOU_0791 845554 - 846993 + | hypothetical protein trxB1 847060 - 847995 + | thioredoxin-disulfide reductase TERM 843 848012 - 847991 - T 78 -10.3 -2.59608 | opp_overlap 847990, overlap 847990 ATTTAAACGATCAAG CTTAATTCG AAGT CGAATTAAG ATGTTGAGCTGTAAA TERM 844 848266 - 848249 - T 73 -8.5 -3.53444 | opp_overlap 848249 848251 GTAGTGGTTCTTAAA CATTAGC CACA GCTAATG TGTACTTAAAAATAG TERM 845 848305 - 848285 - T 81 -9.1 -3.61527 | overlap 848287 ACTTAAAAATAGGAA TACATGAGT AAA ACTCATGCA TAAGAAATACTAATT TERM 846 848303 - 848287 - T 78 -9.5 -3.37164 | overlap 848285 TTAAAAATAGGAATA CATGAGT AAA ACTCATG CATAAGAAATACTAA USA300HOU_0793 848680 - 848369 - | hypothetical protein TERM 847 848434 - 848450 + g 73 -8 -3.68024 | TGCACATTATTGTAA GCTGAC TTTTC GTCAGC TTCTGTGTTGGGGCC TERM 848 848488 - 848507 + g 74 -9.4 -3.09273 | opp_overlap 848492, overlap 848492 CTTGCATTGTCTGTA GAAATTGG GAAT CCAATTTC TCTATGTTGGGGCCC TERM 849 848670 - 848658 - G 88 -7.7 -5.07567 | opp_overlap 848657 CTAGAGTTGAAAAAA GCTTG TTG CAAGC GCATTTTCATTCAGT TERM 850 848926 - 848948 + G 78 -7.8 -4.08689 | opp_overlap 848926 CTATTAGTTGTAACA GGTTTATCTG GCG CAGGTAAATC TTTGGTTATTCAATG TERM 851 848955 - 848981 + G 70 -3.8 -4.99035 | AGGTAAATCTTTGGT TATTCAATGTTT AGA AGACATGGGATA TTTTTGTGTAGATAA USA300HOU_0794 848875 - 849786 + | hypothetical protein USA300HOU_0795 849783 - 850778 + | hypothetical protein USA300HOU_0796 850888 - 851832 + | hypothetical protein TERM 852 851841 - 851870 + F 100 -9.5 -5.71983 | opp_overlap 851841 851840 851868, overlap 851868 ATTATAAGTAAGAAG GTGTTTTTGGTAG TGAA TTATCAAAAACAC TTTTTTTATGATTAA TERM 853 852112 - 852091 - f 95 -10.2 -4.12857 | opp_overlap 852091 852094, overlap 852094 AATCAGCATAAATAA GAATCCCG ACATTG CGGGATTC TCTGTATTGAAAAGT TERM 854 852091 - 852112 + F 81 -10.2 -3.09452 | opp_overlap 852091 852094, overlap 852094 AATCAGCATAAATAA GAATCCCG ACATTG CGGGATTC TCTGTATTGAAAAGT TERM 855 852109 - 852094 - f 70 -6.1 -4.17309 | opp_overlap 852091 852094, overlap 852091 CAGCATAAATAAGAA TCCCG ACATTG CGGGA TTCTCTGTATTGAAA TERM 856 852347 - 852333 - f 71 -7.2 -3.71794 | ATGTAACTATTTAAA GTCAAA GTG TTTGAC CAAATTTGACTTAAT clpP 852406 - 852993 + | endopeptidase ClpP TERM 857 853005 - 853026 + T 82 -6.6 -4.99035 | opp_overlap 853005 ATAATTCAAAGTAAA GAGTAGAC TAAGCT GTCTGCTC TTTTTGTATGAGTAA TERM 858 853118 - 853161 + T 93 -11.2 -3.22499 | opp_overlap 853119 853124 853144, overlap 853114 853119 853124 TTGAACCGTAACTAT ATGAAATGTTCCCTTCAAAG TAGA CATTGAAAGGAACATTTCAA TCCTTTGTTTGTAAG TERM 859 853160 - 853119 - T 100 -16.9 -2.92246 | opp_overlap 853119 853118 853114 853124, overlap 853124 853144 TGAACCGTAACTATA TGAAATGTTCCCTTCAAAG TAGA CATTGAAAGGAACATTTCA ATCCTTTGTTTGTAA TERM 860 853119 - 853160 + T 100 -14.7 -2.52776 | opp_overlap 853119 853124 853144, overlap 853118 853114 853124 TGAACCGTAACTATA TGAAATGTTCCCTTCAAAG TAGA CATTGAAAGGAACATTTCA ATCCTTTGTTTGTAA TERM 861 853155 - 853124 - T 95 -11 -3.889 | opp_overlap 853124 853119 853118 853114, overlap 853119 853144 CGTAACTATATGAAA TGTTCCCTTCAAAG TAGA CATTGAAAGGAACA TTTCAATCCTTTGTT TERM 862 853124 - 853155 + T 80 -8.8 -3.75898 | opp_overlap 853119 853124 853144, overlap 853119 853118 853114 CGTAACTATATGAAA TGTTCCCTTCAAAG TAGA CATTGAAAGGAACA TTTCAATCCTTTGTT USA300HOU_0798 854138 - 853236 - | hypothetical protein TERM 863 853381 - 853393 + g 73 -7.7 -3.75015 | opp_overlap 853381 AGACGCATTGCAAGA CTTGG TGC CCAAG TTTCATGAGGCTTAT TERM 864 854379 - 854405 + H 100 -10.1 -5.56573 | overlap 854380 ACTCCCTTTAGTAGT GGACCCGTACG TTAAT CGTGCGGGTCG TTTTTATTTATTTCT TERM 865 854380 - 854404 + H 100 -13.6 -3.90284 | overlap 854379 CTCCCTTTAGTAGTG GACCCGTACG TTAAT CGTGCGGGTC GTTTTTATTTATTTC USA300HOU_0799 854840 - 855469 + | hypothetical protein USA300HOU_0800 855804 - 855658 - | hypothetical protein TERM 866 855695 - 855714 + g 74 -9.4 -3.09273 | opp_overlap 855699, overlap 855699 CTTCCATTGCCTGTA GAAATTGG AAAT CCAATTTC TCTATGTTGGGGCCC TERM 867 855720 - 855738 + g 83 -10.3 -3.20164 | ATCCAATTTCTCTAT GTTGGGG CCCCA CCCCAAC TTGCATTGCCTGTAG TERM 868 856040 - 856019 - H 81 -5.9 -5.27476 | GCGAATAAAATAAAA CGTTTTGTT GAAT AACAAATCG AAAATATATTGCAAG USA300HOU_0801 856229 - 857242 + | glycolytic operon regulator gap 857295 - 858305 + | glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TERM 869 858374 - 858404 + F 90 -8.4 -4.98522 | gap 1, opp_overlap 858365 858377 ATTAAAGCTTATGAG TAAGCGG-GGAGC ACAAAC GCTTCTCCGCTTA TTTTTATATAAAATT pgk 858444 - 859634 + | phosphoglycerate kinase tpi 859756 - 860517 + | triosephosphate isomerase pgm 860520 - 862037 + | phosphoglyceromutase eno 862167 - 863471 + | phosphopyruvate hydratase TERM 870 863584 - 863611 + F 100 -9.2 -5.79595 | CGCTTAAATTTATAG CCTGCCACAG AGTTGAGA CTGTGGTAGG TTTTTTATTTTGAAG USA300HOU_0807 863811 - 864269 + | hypothetical protein TERM 871 864486 - 864474 - g 82 -5.5 -5.27335 | opp_overlap 864474 TTCGGTAAACAAAAA CAACG TGG CGTCG ATTTATTCTTAAATA secG 864336 - 864569 + | preprotein translocase subunit SecG TERM 872 864571 - 864593 + F 88 -4 -5.73978 | ATCTTGGTATGTAAG GTCCGGCGAT GTA AATGTCGGGC TTTTTTATTTATAAT USA300HOU_0809 864685 - 865425 + | carboxylesterase vacB 865459 - 867831 + | ribonuclease R USA300HOU_0811 867853 - 868317 + | SsrA-binding protein TERM 873 868362 - 868384 + F 74 -8.6 -3.23149 | overlap 868360 868359 868364 TGATATAGTTATATG TGCTTTTGTA AAT TACAAAAGTA TGATTTGTTTGATTT TERM 874 868364 - 868382 + F 73 -9 -3.1541 | overlap 868362 868360 868359 ATATAGTTATATGTG CTTTTGTA AAT TACAAAAG TATGATTTGTTTGAT TERM 875 868775 - 868799 + F 100 -10 -5.8901 | GTCTCCATATTTGTA GCCTACAGCC TTTGT GGTTGTGGGC TTTTTTATTTTGTGT TERM 876 869099 - 869115 + G 73 -3.8 -5.10461 | TGGATAAATGGCTAC TGAAAA AGAAC TTTTCA TTTTTGTTACGTCAC USA300HOU_0812 869091 - 869372 + | hypothetical protein TERM 877 869578 - 869621 + T 72 -8.4 -3.28265 | opp_overlap 869579, overlap 869576 869572 869579 869581 TTATAACTATAAAAA ATAGCTATGAAAAAATCTAT CGTC ATAGATTCCTTCATAGCTAA TCTTAGTATGTTTAT TERM 878 869620 - 869579 - T 100 -16.3 -5.39755 | opp_overlap 869578 869576 869572 869579 869581 TATAACTATAAAAAA TAGCTATGAAAAAATCTAT CGTC ATAGATTCCTTCATAGCTA ATCTTAGTATGTTTA TERM 879 869579 - 869620 + T 89 -11.9 -2.55874 | opp_overlap 869579, overlap 869578 869576 869572 869581 TATAACTATAAAAAA TAGCTATGAAAAAATCTAT CGTC ATAGATTCCTTCATAGCTA ATCTTAGTATGTTTA TERM 880 869581 - 869618 + T 76 -10.1 -2.80437 | opp_overlap 869579, overlap 869579 869578 869576 869572 TAACTATAAAAAATA GCTATGAAAAAATCTAT CGTC ATAGATTCCTTCATAGC TAATCTTAGTATGTT USA300HOU_0813 869962 - 869639 - | hypothetical protein TERM 881 869750 - 869767 + g 91 -2.8 -6.01369 | TTCTCTAATGTTTTC CAATTT TGTTTT AAATTG TTTTTTTGTTATTTG USA300HOU_0814 870124 - 869978 - | hypothetical protein USA300HOU_0815 871044 - 870316 - | hypothetical protein TERM 882 871109 - 871086 - H 78 -6.8 -4.63184 | opp_overlap 871086 AATTTATTTTAAAAA CTCTAAATGA CTTA TCATTTTGAG TAATTAAACAAAGTT USA300HOU_0816 871483 - 871635 + | hypothetical protein USA300HOU_0817 871643 - 872086 + | hypothetical protein TERM 883 872114 - 872102 - f 71 -5.5 -4.36931 | opp_overlap 872102 872094 872093, overlap 872094 GAAGTTATATTAAAA GGTCA AAT CGACC GTTTTAATACTTATA USA300HOU_0818 872303 - 872833 + | acetyltransferase TERM 884 873149 - 873120 - g 89 -3.5 -5.84011 | opp_overlap 873138 873139 AAGAAAAAAGAAAAA CACGCAATTCG GAAAAAAT CGATTGGCGTG GCTTCAGTGCTTGTA clfA 873096 - 875897 + | fibrinogen-binding protein TERM 885 875955 - 875938 - f 95 -11.3 -3.73914 | opp_overlap 875938 ATGATTCATGAAGAA GCCACCT TAAA AGGTGGC TTTTTTACTTGGATT TERM 886 875938 - 875955 + F 100 -11.3 -5.29385 | opp_overlap 875938 ATGATTCATGAAGAA GCCACCT TAAA AGGTGGC TTTTTTACTTGGATT vwb 876118 - 877644 + | von Willebrand factor-binding protein TERM 887 877749 - 877784 + F 81 -5.7 -5.24449 | opp_overlap 877754, overlap 877752 CAATGATGCAATCTA GTA-TAGTCCACATTCT AAAC AGG-TGTGGACTATTAC TTTTTTCACTTTATA TERM 888 877752 - 877780 + F 76 -7.6 -3.95677 | gap 1, opp_overlap 877754, overlap 877749 TGATGCAATCTAGTA TAGTCCACATTCT AAAC AGG-TGTGGACTA TTACTTTTTTCACTT emp 877995 - 879017 + | extracellular matrix protein-binding protein TERM 889 879066 - 879098 + F 100 -8.6 -5.1361 | opp_overlap 879066 879070, overlap 879057 879094 ACCTATTATTTTAAA TATAGTCTACAATC TATGT GGTTGTAGGCTGTA TTTTTTGCAGTTTAT USA300HOU_0822 879352 - 879822 + | hypothetical protein TERM 890 879953 - 879977 + F 76 -5 -5.0925 | TGTCTCGATATGATA GTCTGCAACG ATTCA TGTTGTAGGC TTTTTAATTTTACAA nuc 880163 - 880849 + | micrococcal nuclease TERM 891 880856 - 880893 + F 100 -12.3 -4.66163 | opp_overlap 880864, overlap 880864 GGTCAATAATGCTCA TTGTAAAAGTGTCACTG CTGC TAGTGGCACTTTTATAA TTTTTAGATCACGAT TERM 892 880864 - 880885 + F 82 -7.3 -4.72556 | opp_overlap 880864, overlap 880856 ATGCTCATTGTAAAA GTGTCACTG CTGC TAGTGGCAC TTTTATAATTTTTAG csp 881206 - 881406 + | cold-shock protein TERM 893 881395 - 881413 + T 72 -7.6 -3.62046 | opp_overlap 881395 CAAGCTGCAAACGTA GTTAAAAT GTA ATTTTAAC TTATTCAAACAGTCC TERM 894 881423 - 881442 + T 93 -5.7 -5.75599 | opp_overlap 881423 TTTAACTTATTCAAA CAGTCCT TACTAT AGGGCTG TTTTTTTATGCTTTA TERM 895 881595 - 881556 - T 85 -8.1 -4.64861 | gap 1, opp_overlap 881556 881555 TGGTTCTAAAATAAA TCGAACTGATGGAAAAGT TTTTT ACTTTT-CATCTGTCCGA CTTTTGATTTTGAAT TERM 896 881670 - 881619 - T 74 -3.4 -5.47159 | overlap 881620 TTTGAATATAAAAAA GCGCCA-ATACAGAACTTTAAT AATGACGAGA ATTAAAG-TCTGTATATGGCGA TAACAAGAAGTAATG TERM 897 881669 - 881620 - T 71 -6.9 -3.87211 | overlap 881619 TTGAATATAAAAAAG CGCCA-ATACAGAACTTTAAT AATGACGAGA ATTAAAG-TCTGTATATGGCG ATAACAAGAAGTAAT TERM 898 881708 - 881684 - T 81 -9.5 -3.63862 | overlap 881680 GATAACAAGAAGTAA TGTTAAACACT CAA AATGTTTAACA ATAATAGGATACCAC USA300HOU_0825 882120 - 881902 - | hypothetical protein USA300HOU_0826 882466 - 882182 - | hypothetical protein USA300HOU_0827 883123 - 882554 - | hypothetical protein TERM 899 883291 - 883259 - R 100 -15.8 -5.66229 | ATTAAGAATAAAAAA CAGTCTGAAACATC ATTGA GACGTTTCAGACTG GATATAAAATGAATT USA300HOU_0828 883788 - 883528 - | hypothetical protein TERM 900 884030 - 884051 + H 85 -10.3 -3.58522 | opp_overlap 884030 CAGATATCAAAAAAA TGTGCAAAA TCAC TTTTGCACA TTTACAAATACTAGT TERM 901 884051 - 884030 - H 100 -10.3 -5.60864 | opp_overlap 884030 CAGATATCAAAAAAA TGTGCAAAA TCAC TTTTGCACA TTTACAAATACTAGT USA300HOU_0829 884129 - 884332 + | hypothetical protein USA300HOU_0830 884565 - 884329 - | hypothetical protein gpmA1 884781 - 885371 + | phosphoglycerate mutase TERM 902 885418 - 885380 - T 100 -9.1 -4.73677 | gap 1, opp_overlap 885380 885392 TTTATAATAAATAAA GCGTTATAC-ATAGACAC AAGT ATGTCTTTTGTATAACGC TTTTAAAATACAACT TERM 903 885380 - 885418 + T 81 -8.4 -4.13945 | gap 1, opp_overlap 885380, overlap 885392 TTTATAATAAATAAA GCGTTATAC-ATAGACA CAAGTA TGTCTTTTGTATAACGC TTTTAAAATACAACT USA300HOU_0832 886061 - 885444 - | LysE family L-lysine exporter TERM 904 886154 - 886130 - R 100 -10.1 -5.69793 | opp_overlap 886133 ATATCAAATAAAAAA CAACTACTCAA TAG TAGAGTAGTTG TATGAAAAATAGAAC USA300HOU_0833 886710 - 886216 - | hypothetical protein TERM 905 887052 - 887025 - g 93 -7.8 -5.49569 | opp_overlap 887024 887025, overlap 887028 CACGAATAGAAAAAA TAACCAACCAAA AATT TTTGGTTGGCAA ATTTGAATTTTATGT TERM 906 887049 - 887028 - g 100 -11.7 -4.80737 | opp_overlap 887025 887024, overlap 887025 GAATAGAAAAAATAA CCAACCAAA AATT TTTGGTTGG CAAATTTGAATTTTA USA300HOU_0834 886958 - 887092 + | hypothetical protein osmC 887531 - 887109 - | osmotically inducible protein OsmC aroD 887679 - 888395 + | 3-dehydroquinate dehydratase USA300HOU_0837 888478 - 889017 + | nitroreductase USA300HOU_0838 889487 - 889167 - | thioredoxin arsC1 889631 - 889987 + | hypothetical protein gcvH 890145 - 890525 + | glycine cleavage system protein H TERM 907 890537 - 890559 + F 100 -11.4 -4.94262 | ATAATCACCGTGTAA CTCCTTAATC TAA GATTGAGGAG TTTATTTTTAGTCTG USA300HOU_0841 890589 - 890702 + | hypothetical protein USA300HOU_0842 890704 - 891582 + | hypothetical protein TERM 908 891705 - 891728 + G 71 -6.8 -4.15222 | opp_overlap 891711, overlap 891707 891711 AACTTGCATTGTCTG TAGAAATTGG GAAT CCAATTTCTC TTTGTTGGGGCCCAT TERM 909 891707 - 891726 + G 80 -9.4 -3.6761 | opp_overlap 891711, overlap 891705 891711 CTTGCATTGTCTGTA GAAATTGG GAAT CCAATTTC TCTTTGTTGGGGCCC TERM 910 891732 - 891750 + G 83 -10.3 -3.20164 | ATCCAATTTCTCTTT GTTGGGG CCCAT CCCCAAC TTGCATTGCCTGTAG USA300HOU_0843 891652 - 891765 + | hypothetical protein TERM 911 891830 - 891818 - g 88 -7.7 -5.1925 | opp_overlap 891817 CTAGAATTGAAAAAA GCTTG TTA CAAGC GCATTTTCGTTCAGT USA300HOU_0844 891787 - 891933 + | hypothetical protein TERM 912 891963 - 891943 - f 81 -9.1 -3.61527 | overlap 891945 ATTTAAAAATAGGAA TACATGAGT AAA ACTCATGCA TAAGAAATACTAATT TERM 913 891961 - 891945 - f 78 -9.5 -3.37164 | overlap 891943 TTAAAAATAGGAATA CATGAGT AAA ACTCATG CATAAGAAATACTAA USA300HOU_0845 892324 - 892710 + | TOPRIM domain-containing topiosmerase/primase USA300HOU_0846 892703 - 892999 + | hypothetical protein TERM 914 893176 - 893211 + F 100 -8.5 -5.92399 | opp_overlap 893164 893158 893155, overlap 893164 893158 893155 AAACAATACTACTAT TGCTTTCTCAATTTT TCTATC GATATTGAGAAAGCA TTTTTTATTTTATTA USA300HOU_0847 893249 - 894274 + | ABC transporter ATP-binding protein USA300HOU_0848 894267 - 894962 + | ABC transporter ATP-binding protein USA300HOU_0849 894980 - 895801 + | ABC transporter ATP-binding protein TERM 915 895821 - 895845 + T 70 -5.1 -4.57057 | opp_overlap 895821 AATTAAATAAAAATA CCCTTTAAT AACAACG ATTAAGGGG TTATTTTTGTGGTAT TERM 916 895943 - 895924 - T 100 -8.6 -5.95539 | opp_overlap 895924, overlap 895926 TTTTAAACAAAAAAA TACGCTCA GATT TGAGCGCA TTATCCAAGTTTTAC TERM 917 895941 - 895926 - T 89 -9 -4.61687 | opp_overlap 895924, overlap 895924 TTAAACAAAAAAATA CGCTCA GATT TGAGCG CATTATCCAAGTTTT USA300HOU_0850 897164 - 895944 - | integrase TERM 918 897219 - 897203 - R 82 -8 -4.40692 | GGCAAAAAATAATAA GGGTAG GCATG CTACCC GGAAAATAATGATTA USA300HOU_0851 897980 - 897252 - | staphylococcal enterotoxin TERM 919 897935 - 897971 + g 82 -5.6 -5.29385 | gap 1, opp_overlap 897940, overlap 897940 CACTATTAGAGACAC TTAA-AGTTATTATATT TATT AATATGATAACTATTAA TTTTTTCATTGCATT USA300HOU_0852 898732 - 898004 - | staphylococcal enterotoxin USA300HOU_0853 899207 - 898749 - | hypothetical protein USA300HOU_0854 899551 - 899219 - | bacteriophage repressor USA300HOU_0855 899744 - 900007 + | bacteriophage repressor USA300HOU_0856 900000 - 900272 + | hypothetical protein USA300HOU_0857 900263 - 900457 + | hypothetical protein USA300HOU_0858 900424 - 900627 + | hypothetical protein USA300HOU_0859 900629 - 901012 + | hypothetical protein USA300HOU_0860 901013 - 901261 + | hypothetical protein USA300HOU_0861 901353 - 903725 + | DNA primase USA300HOU_0862 904396 - 904740 + | hypothetical protein USA300HOU_0863 904965 - 905171 + | hypothetical protein USA300HOU_0864 905158 - 906216 + | hypothetical protein TERM 920 906330 - 906349 + F 76 -6.5 -4.64598 | opp_overlap 906329, overlap 906321 AACTTTTATGAAAGG GGGATAA CTTGAT TTATCCC TTTTTCAGATACTTA USA300HOU_0865 906400 - 906891 + | hypothetical protein TERM 921 907271 - 907301 + F 100 -9.1 -4.38712 | opp_overlap 907270, overlap 907272 TATATATATAACGAT CTAGCCATAACTC TATTC GGGTTATGGCTAC TTTTATAGGGGTAAA TERM 922 907272 - 907300 + F 100 -12.6 -3.22906 | opp_overlap 907270, overlap 907271 ATATATATAACGATC TAGCCATAACTC TATTC GGGTTATGGCTA CTTTTATAGGGGTAA USA300HOU_0866 907320 - 908288 + | hypothetical protein TERM 923 908303 - 908320 + T 91 -4.1 -6.09196 | overlap 908304 AAAGATATTTTTTAA TGTCACT TACG AGTGGCG TTTTTTTATTTTAAG TERM 924 908483 - 908511 + T 75 -7.5 -4.1399 | opp_overlap 908467 908483 TGCCTCTTAAAAAAA GACAAGTTACATT AAA AAAGTAACCTGTC TTTATCTATAACTAG TERM 925 908511 - 908483 - T 100 -9.7 -5.40072 | opp_overlap 908483, overlap 908467 TGCCTCTTAAAAAAA GACAAGTTACATT AAA AAAGTAACCTGTC TTTATCTATAACTAG ear 909077 - 908523 - | Ear protein TERM 926 909279 - 909296 + H 90 -7.7 -5.33026 | TTCATCTATTCGTAA GTTAGCC TTCG GGCTGAC TTTTTATTTCCATTA TERM 927 909337 - 909362 + H 100 -9.1 -5.84432 | AATCTTGTTGTTATT TAGGCAGGTAC TTCG GTACTTGTCTA TTTTTTTATGTTATA TERM 928 909770 - 909794 + H 100 -9.3 -4.98531 | TAAATCATATTAATG GCTCAGTAACG TGA TGTTGCTGGGC TTTTTAATTTAAACA USA300HOU_0868 910111 - 910305 + | hypothetical protein TERM 929 910338 - 910369 + T 100 -9.5 -5.0916 | AATACACTGCACATG CCACTTAGTCGGT ATAACC ATCGGCTAGGTGG TTTTTGTATTAAAAA USA300HOU_0869 911389 - 910538 - | hypothetical protein USA300HOU_0870 911717 - 912478 + | ABC transporter ATP-binding protein USA300HOU_0871 912576 - 913883 + | ABC transporter ATP-binding protein USA300HOU_0872 914013 - 913876 - | hypothetical protein sufS 913989 - 915239 + | selenocysteine lyase iscU 915229 - 915693 + | iron-sulfur (Fe-S) cluster formation protein IscU USA300HOU_0875 915844 - 917241 + | ABC transporter ATP-binding protein TERM 930 917342 - 917315 - f 83 -10 -3.70446 | opp_overlap 917321, overlap 917321 TGATACTGAATATAA CAAAAAGCCACA TTAC TGTGGCTTTTTT TGTTTTATAACTAAA TERM 931 917336 - 917321 - f 100 -9 -5.29716 | opp_overlap 917321, overlap 917315 TGAATATAACAAAAA GCCACA TTAC TGTGGC TTTTTTTGTTTTATA TERM 932 917321 - 917336 + F 100 -9 -6.14618 | opp_overlap 917315 917321 TGAATATAACAAAAA GCCACA TTAC TGTGGC TTTTTTTGTTTTATA USA300HOU_0876 917431 - 917565 + | hypothetical protein USA300HOU_0877 917885 - 917571 - | hypothetical protein TERM 933 917781 - 917793 + g 74 -6.3 -4.28188 | opp_overlap 917780, overlap 917777 TAAGCTTCGACTAAG TGCAT AAT ATGCA TTTATATTATGGCTA TERM 934 919238 - 919228 - g 76 -4 -5.2197 | GATAAAAAGGAAAAA GAAA AAC TTTC TCAACAGCAAATTCA USA300HOU_0878 918250 - 919290 + | CBS domain-containing protein USA300HOU_0880 920428 - 920294 - | hypothetical protein USA300HOU_0879 919304 - 920371 + | dioxygenase USA300HOU_0881 920438 - 920536 + | hypothetical protein USA300HOU_0882 920584 - 921432 + | hypothetical protein USA300HOU_0883 921445 - 922272 + | hypothetical protein USA300HOU_0884 922299 - 923618 + | bifunctional 5-nucleotidase/2,3-cyclic phosphodiesterase TERM 935 924520 - 924488 - g 75 -4.9 -4.84642 | overlap 924489 GGTAAATTAAGAAAA GTGGCAATGGATAAA GGG TTTAAACATTGCCAA GCTGGACCTTTAGTA TERM 936 924519 - 924489 - g 72 -8.4 -3.497 | overlap 924488 GTAAATTAAGAAAAG TGGCAATGGATAAA GGG TTTAAACATTGCCA AGCTGGACCTTTAGT lipA 923702 - 924619 + | lipoyl synthase USA300HOU_0886 924740 - 925132 + | hypothetical protein USA300HOU_0887 925477 - 925211 - | hypothetical protein USA300HOU_0888 925575 - 926009 + | hypothetical protein USA300HOU_0889 926009 - 926788 + | haloacid dehalogenase USA300HOU_0890 926821 - 927780 + | dehydrogenase TERM 937 927891 - 927920 + F 89 -9.5 -4.20806 | opp_overlap 927891, overlap 927895 AATTCAATAACATTA TAAACTCGTCATA TTAA TGTGATGAGTTTA TTTGATTTTGACGTA TERM 938 927895 - 927916 + F 73 -5.9 -4.67692 | opp_overlap 927891, overlap 927891 CAATAACATTATAAA CTCGTCATA TTAA TGTGATGAG TTTATTTGATTTTGA USA300HOU_0891 928037 - 928144 + | hypothetical protein USA300HOU_0892 928192 - 928344 + | hypothetical protein dltA 928360 - 929817 + | D-alanine--D-alanyl carrier protein ligase dltB 929814 - 931028 + | D-alanine transfer protein DltB dltC 931046 - 931282 + | D-alanine--poly(phosphoribitol) ligase subunit 2 dltD 931279 - 932454 + | D-alanine transfer protein DltD TERM 939 932508 - 932457 - T 87 -8.4 -4.78661 | gap 1, opp_overlap 932457 932463 ACCTAAAAATTAAAA TACAAATAGCACATA-ACTCAACGA TTT TGATTGAGCGTATGTGCTATTTTTA TATTTTAAATTTCAT TERM 940 932463 - 932502 + T 71 -3.1 -5.28983 | gap 2, opp_overlap 932457, overlap 932457 AAATTAAAATACAAA TAGCACATA-ACTCAA-CG ATTT TGATTGAGCGTATGTGCTA TTTTTATATTTTAAA TERM 941 932671 - 932631 - T 70 -3.7 -5.1287 | gap 3, opp_overlap 932631 TTGACAGCGAAAAAA GACAGGTAATAACTG-ATTA TAAA TAATTCAGT-ATT-CCTGTC TTTGTTGTTATTCAT USA300HOU_0897 932959 - 932717 - | hypothetical protein TERM 942 932912 - 932897 - G 71 -3.2 -5.11063 | ATCACGTAATAAAAA TGGACG AAGA CGTTCA ATAACTTCTGCTACT USA300HOU_0898 933060 - 933383 + | hypothetical protein TERM 943 933437 - 933396 - T 71 -9 -2.80727 | opp_overlap 933401, overlap 933401 TAATATACACATAAC TAAAAGCAATGTCAGT AATAGTGTGA ACTGACATTGCTTTTT AATTTTAACCATTGT TERM 944 933401 - 933432 + T 100 -8.9 -5.0925 | opp_overlap 933396 933401 TACACATAACTAAAA GCAATGTCAGT AATAGTGTGA ACTGACATTGC TTTTTAATTTTAACC TERM 945 933432 - 933401 - T 89 -8.9 -4.5464 | opp_overlap 933401, overlap 933396 TACACATAACTAAAA GCAATGTCAGT AATAGTGTGA ACTGACATTGC TTTTTAATTTTAACC USA300HOU_0899 934506 - 933442 - | NADH dehydrogenase USA300HOU_0900 934823 - 935059 + | hypothetical protein TERM 946 935411 - 935397 - g 75 -8.6 -3.36327 | opp_overlap 935406, overlap 935406 GTAGTTCATTTAGAA CTGCAA AAG TTGCAG GTAATCCTGAAAATT USA300HOU_0901 935072 - 935431 + | hypothetical protein TERM 947 935665 - 935626 - f 71 -7.4 -3.75629 | CATTTTTAATCGAAA TCAGGCTACGAAAAAATT AATT AATTTTTTCACAATCTGA CTGAATCTTGCTTGA USA300HOU_0902 935885 - 937093 + | NADH dehydrogenase TERM 948 937184 - 937132 - f 70 -5.7 -4.31065 | opp_overlap 937143 937147, overlap 937147 ACACATAAAATTAAA TTATTCATTTATAAAGTCCTTCAGT GTC ACTGAAGGGCTTTATTGTTGTACAA TTTGAAGTGAGTAAC TERM 949 937143 - 937173 + F 100 -16.4 -3.83262 | opp_overlap 937132 937147, overlap 937147 TAAATTATTCATTTA TAAAGTCCTTCAGT GTC ACTGAAGGGCTTTA TTGTTGTACAATTTG TERM 950 937147 - 937169 + F 100 -12.8 -4.51812 | opp_overlap 937132 937147, overlap 937143 TTATTCATTTATAAA GTCCTTCAGT GTC ACTGAAGGGC TTTATTGTTGTACAA TERM 951 937169 - 937147 - f 93 -10.6 -3.92869 | opp_overlap 937147 937143, overlap 937132 TTATTCATTTATAAA GTCCTTCAGT GTC ACTGAAGGGC TTTATTGTTGTACAA TERM 952 939835 - 939853 + G 77 -6 -4.72272 | opp_overlap 939834 939835 CTTAATAGTAACAAT TGTAGCAA TAC TAGCTACA TTTTTAGTACAAACA USA300HOU_0903 939110 - 940426 + | NhaC family Na(+)/H(+) antiporter USA300HOU_0904 940445 - 940819 + | hypothetical protein TERM 953 940825 - 940869 + T 90 -7.4 -5.626 | gap 2, opp_overlap 940822 940825 940839 TTTAAAATAAAAGAA CTGCTAGCTGAAATGTTATGAG ATA TTCATAAC-TA-CGGCTAGCAG TTTTTTTATGCGCTA USA300HOU_0905 942029 - 940875 - | hypothetical protein TERM 954 942066 - 942054 - R 70 -6.3 -4.07568 | opp_overlap 942053 942049 942046 942054, overlap 942059 TCTCTCTTTTTAAAA CGTAA TCG TTACG ATTTATAATTATTAT TERM 955 942239 - 942198 - R 100 -14 -5.10163 | opp_overlap 942198 AATGTCAAAAGAAAA CAGCAGTAAAATCATTCC TAATTT GGAATCATCTTACTGCTG TTTGTTGTTGATTTA TERM 956 942198 - 942239 + r 100 -11.8 -4.54404 | opp_overlap 942198 AATGTCAAAAGAAAA CAGCAGTAAAATCATTCC TAATTT GGAATCATCTTACTGCTG TTTGTTGTTGATTTA mnhG2 942634 - 942278 - | putative monovalent cation/H+ antiporter subunit G TERM 957 942423 - 942409 - G 70 -7.2 -3.73234 | opp_overlap 942408 TAATTAATACAAAGA TAATCG CAA CGATTA ATTGCATATTTACAA mnhF2 942905 - 942612 - | putative monovalent cation/H+ antiporter subunit F TERM 958 942799 - 942785 - G 75 -8.6 -3.39529 | TTAATTGAAGACCAA TCGCAT CTA ATGCGA CAACACGATCGGCAA mnhE2 943384 - 942905 - | putative monovalent cation/H+ antiporter subunit E mnhD2 944882 - 943386 - | putative monovalent cation/H+ antiporter subunit D mnhC2 945216 - 944875 - | putative monovalent cation/H+ antiporter subunit C mnhB2 945644 - 945216 - | putative monovalent cation/H+ antiporter subunit B mnhA2 948042 - 945637 - | monovalent cation/H+ antiporter subunit A TERM 959 945666 - 945676 + g 80 -6.8 -4.72386 | TCACCTCGTTACCTT GCGT TTG ACGC TTTTTACGTAATTTA kapB 948556 - 948173 - | hypothetical protein prsA1 948620 - 949213 + | peptidylprolyl isomerase TERM 960 950117 - 950069 - f 100 -16.5 -2.62515 | opp_overlap 950074, overlap 950074 AAGTTTCTTAGACTA TAAAAGAGATTAGTATCTATTAA ATT TTATTAGATACTAATCTCTTTTT GTCTACGATAACGTA TERM 961 950112 - 950074 - f 100 -16.4 -4.50976 | opp_overlap 950074, overlap 950069 TCTTAGACTATAAAA GAGATTAGTATCTATTAA ATT TTATTAGATACTAATCTC TTTTTGTCTACGATA TERM 962 950074 - 950112 + F 100 -16.4 -4.9792 | opp_overlap 950074 950069 TCTTAGACTATAAAA GAGATTAGTATCTATTAA ATT TTATTAGATACTAATCTC TTTTTGTCTACGATA TERM 963 950674 - 950658 - g 76 -4.4 -5.20534 | gap 1, overlap 950660 AGCAATGAAGAAAAA CG-GTGC CAAA GCACTCG TACAAATACATCATG USA300HOU_0915 950368 - 951495 + | flavin reductase rocD 951803 - 952993 + | ornithine--oxo-acid transaminase gudB 953102 - 954346 + | glutamate dehydrogenase TERM 964 954365 - 954406 + T 100 -9.6 -5.08255 | opp_overlap 954369 ATTATCATATGTGAT TTAACGAGCTTGGGAC AGAAAACAAA GCCCTAAGCTCGTTAA TTTTATTTTAGCAGT TERM 965 954797 - 954753 - T 89 -8.7 -4.59773 | opp_overlap 954755, overlap 954755 TCCCACTCCCAAAAA GACAGCAGTAGGATAATTTCA ATT TGGAAATATCTTACTGCTGTT TTTTATAGTAATAGC TERM 966 954795 - 954755 - T 100 -11.3 -3.91506 | opp_overlap 954755, overlap 954753 CCACTCCCAAAAAGA CAGCAGTAGGATAATTTCA ATT TGGAAATATCTTACTGCTG TTTTTTATAGTAATA TERM 967 954755 - 954795 + T 100 -15.7 -5.32882 | opp_overlap 954755 954753 CCACTCCCAAAAAGA CAGCAGTAGGATAATTTCA ATT TGGAAATATCTTACTGCTG TTTTTTATAGTAATA glpQ2 955778 - 954849 - | glycerophosphodiester phosphodiesterase TERM 968 955843 - 955861 + r 71 -4.6 -4.69559 | CTACAAAAACCTGCT TGTGAAAA CGC TTTACACA TTTCTTTTACAATTT TERM 969 956004 - 955970 - R 84 -8.8 -4.34947 | AAGAGAGCATTAAAA TACCCACAATGT AATTTTAATAG ACATTGTGGGTA GGTAGATTAACGTAT argH 957399 - 956020 - | argininosuccinate lyase argG 958594 - 957389 - | argininosuccinate synthase pgi 959224 - 960276 + | glucose-6-phosphate isomerase TERM 970 960348 - 960389 + F 100 -16.2 -5.42975 | opp_overlap 960344 960342 TTTAAAGCATATTTT CGAGGTTGTCATTACA AATGTAAAAA TGTAATGACAACCTCG TTTTTATTTATATGC TERM 971 960507 - 960530 + F 70 -5.4 -4.58308 | overlap 960509 TACTAGAGACTGATT TATTAGCATG ATTA CATGTTAATG TTTCTTTACTTAGTA USA300HOU_0922 960601 - 961176 + | hypothetical protein spsA 961181 - 961705 + | type I general secretory pathway signal peptidase I spsB 961712 - 962296 + | type I general secretory pathway signal peptidase I TERM 972 962351 - 962308 - f 78 -6.9 -4.56883 | opp_overlap 962308 962313 TTAATATGAAACAAA TACAACATCGTTTGTCGGT TTTAAT ACTGATAAACGATGTTTTA TTTTGTTAGTACCAC TERM 973 962308 - 962351 + F 100 -11.3 -4.71426 | opp_overlap 962308, overlap 962313 TTAATATGAAACAAA TACAACATCGTTTGTCGGT TTTAAT ACTGATAAACGATGTTTTA TTTTGTTAGTACCAC TERM 974 962313 - 962346 + F 100 -11.2 -5.28831 | opp_overlap 962308, overlap 962308 ATGAAACAAATACAA CATCGTTTGTCGGT TTTAAT ACTGATAAACGATG TTTTATTTTGTTAGT rexB 962456 - 965932 + | ATP-dependent nuclease Rex subunit B rexA 965933 - 969586 + | ATP-dependent nuclease Rex subunit A USA300HOU_0927 969752 - 970654 + | fumarylacetoacetase TERM 975 970670 - 970697 + F 100 -9.3 -5.61689 | opp_overlap 970669 970670 TTATCATTTAAAAAG CTAACCAGTCT TTATAT AGATTGGTTAG TTTTTTCTTGCTTTT USA300HOU_0928 970983 - 971372 + | hypothetical protein TERM 976 971394 - 971434 + T 100 -10.6 -5.32944 | gap 1, opp_overlap 971380 971393 971396 AGACATATAGTATAT GACATAAGG-CATGGACAA TTAT TAGTCCAAGACCTTATGTC TTTTTTGATTCTAAA TERM 977 971492 - 971468 - T 95 -8 -5.56264 | gap 1 GTTAAACATAAAAAA TGGACTGGATA GTAG TA-CCAGTCCA ACATAATTCTAACCT TERM 978 971526 - 971541 + T 76 -6.2 -4.54343 | opp_overlap 971525 CAATTAAGATTAGAT TGAATC GCAT GATTCA TTTATTTAGCTTTGT cdr 972859 - 971543 - | coenzyme A disulfide reductase USA300HOU_0930 973735 - 972911 - | HAD family phosphatase USA300HOU_0931 973849 - 974157 + | hypothetical protein TERM 979 974252 - 974304 + F 79 -8 -4.31815 | gap 1, opp_overlap 974255, overlap 974255 ATAATTCATTGTGAA TAA-GCTCCCTTCAAAGTAGACATT GAAA AATGAAAATTTTGAAGGGAGCCTTA TTTATGTTCTAGTTT TERM 980 974300 - 974255 - f 81 -9.1 -3.63694 | opp_overlap 974252 974255 ATTCATTGTGAATAA GCTCCCTTCAAAGTAGACATT GAAA AATGAAAATTTTGAAGGGAGC CTTATTTATGTTCTA TERM 981 974255 - 974300 + F 91 -11.3 -3.13947 | opp_overlap 974255, overlap 974252 ATTCATTGTGAATAA GCTCCCTTCAAAGTAGACATT GAAA AATGAAAATTTTGAAGGGAGC CTTATTTATGTTCTA USA300HOU_0932 974704 - 976518 + | acyltransferase TERM 982 976534 - 976565 + F 100 -7.6 -5.7946 | gap 1, opp_overlap 976534 CATATGTTTAATAAG TCTAGTTAATGTGTA ACG TA-ACATTAGCTAGA TTTTTTTATTCAAAA TERM 983 977348 - 977317 - g 79 -5.3 -5.0925 | opp_overlap 977321 TCGTAAAACTAAAAA CAAC-CCTGTGCTCA TTGG TGAAC-CAGGTGTTG GTAAAACTGCAATTG clpB 976721 - 979330 + | endopeptidase ClpB TERM 984 979338 - 979368 + T 100 -13.5 -5.22039 | opp_overlap 979338 979333 ATGAATAAAATTGAA CCAAGAATGTGAT GATTA ATCGCATTCTTGG TTTTTTAGATTTGAA TERM 985 979368 - 979338 - T 93 -11.3 -3.46236 | opp_overlap 979338, overlap 979333 ATGAATAAAATTGAA CCAAGAATGTGAT GATTA ATCGCATTCTTGG TTTTTTAGATTTGAA USA300HOU_0934 980258 - 979389 - | LysR family transcriptional regulator TERM 986 979658 - 979693 + g 80 -7.1 -4.5478 | TTAAAATATTATTTT TAAGTGATGACCA ATATTCTGGA TGGTTATCACTTA TTATTTTGTATTTTT TERM 987 979986 - 979999 + g 74 -2.4 -5.53288 | opp_overlap 979983 GACAACATTTAATTT CGAT TGAAAC ATCG TTTTTTTAAGTTGGA leuA1 980368 - 981513 + | 2-isopropylmalate synthase USA300HOU_0936 981497 - 982138 + | hypothetical protein USA300HOU_0937 982278 - 982129 - | hypothetical protein USA300HOU_0938 982131 - 983249 + | hypothetical protein eap 984059 - 984493 + | extracellular adherence protein Eap TERM 988 984558 - 984603 + T 90 -8.5 -4.94992 | opp_overlap 984557 984558 GATTATAAAATAATT GCCTTGATACAAAGATTAC TCGTAAAT GACATCTTTGTATTAAGGC TTTTTCTAAATTTAA TERM 989 984708 - 984689 - T 75 -4.2 -5.26119 | opp_overlap 984689, overlap 984684 TGGCCAAAAATAAAA GCCGCC TTTATCTG GGCAGC TTCAATAATAAGAAA USA300HOU_0940 984935 - 984750 - | hypothetical protein TERM 990 985105 - 985085 - H 70 -5.5 -4.28361 | opp_overlap 985089 TTAAGCGCATTAAAA CCAATTTCA TAC TGAAATTTG ACGATAATAAAGCAT fabH1 985230 - 986171 + | 3-oxoacyl-(acyl carrier protein) synthase III fabH2 986183 - 987427 + | 3-oxoacyl-[acyl-carrier-protein] synthase TERM 991 987479 - 987425 - T 76 -9.7 -2.78395 | opp_overlap 987437, overlap 987437 AAGAAATTTGAAGCA TAACTATAAAAATCTTCAGTAAC GTTGTTTTA GTTACTGAAGATTTTTTCAGTTT CTTTATACTAAGATG TERM 992 987467 - 987437 - T 93 -8.5 -5.01535 | opp_overlap 987437, overlap 987425 GCATAACTATAAAAA TCTTCAGTAAC GTTGTTTTA GTTACTGAAGA TTTTTTCAGTTTCTT TERM 993 987437 - 987467 + T 93 -8.5 -5.25805 | opp_overlap 987437 987425 GCATAACTATAAAAA TCTTCAGTAAC GTTGTTTTA GTTACTGAAGA TTTTTTCAGTTTCTT USA300HOU_0943 987853 - 987482 - | hypothetical protein oppB1 988096 - 989022 + | oligopeptide ABC transporter membrane protein oppC1 989022 - 990092 + | oligopeptide ABC transporter membrane protein oppD1 990109 - 991191 + | oligopeptide ABC transporter ATP-binding protein oppF1 991181 - 992122 + | oligopeptide ABC transporter ATP-binding protein oppA1 992141 - 993796 + | oligopeptide ABC transporter substrate-binding protein TERM 994 993834 - 993813 - f 72 -8.7 -2.90615 | opp_overlap 993813, overlap 993810 ATGCTTTGTAAATTA GGCTGGAGA CATA TCTCCAGTC TTTTTGTGTTGGATA TERM 995 993813 - 993834 + F 100 -10.9 -5.10767 | opp_overlap 993810 993813 ATGCTTTGTAAATTA GGCTGGAGA CATA TCTCCAGTC TTTTTGTGTTGGATA TERM 996 994165 - 994179 + G 82 -7.8 -4.52897 | opp_overlap 994137 994165 994164 994167 ATGTAGCATTAACAG CACCGC CAA GTGGTG TTTATTCTTCGTTAT TERM 997 995025 - 995001 - g 71 -6.5 -4.2338 | opp_overlap 995001, overlap 994998 TATGAAGACAAAGAA TTACGTAAAGC AAT GCTTTATGCAA TTGATAGAGAAAAAT oppA2 994008 - 995723 + | oligopeptide ABC transporter substrate-binding protein TERM 998 995732 - 995751 + F 91 -10 -4.04174 | opp_overlap 995732 AGCTTAGTAATGTAA CCTCGACG ATTT TGTCGAGG TTTACTTATATGGGG TERM 999 995751 - 995732 - f 76 -9.3 -3.20901 | opp_overlap 995732 AGCTTAGTAATGTAA CCTCGAC GATTTT GTCGAGG TTTACTTATATGGGG TERM 1000 996188 - 996170 - g 71 -5.4 -4.63748 | AAAGAAGCAAATAAA TTAGCAAA AGA TTTACTAA AAAAAGTTGGAATTG oppD2 995774 - 996760 + | oligopeptide ABC transporter ATP-binding protein TERM 1001 997215 - 997197 - g 71 -9 -3.14878 | overlap 997195 TGGCCTAAGTGAAGA TGCATATT ATA AATATGCA CATGAATTTTCAGGT oppD3 996763 - 997743 + | oligopeptide ABC transporter ATP-binding protein oppB3 997736 - 998698 + | oligopeptide ABC transporter membrane protein oppC3 998710 - 999591 + | oligopeptide ABC transporter membrane protein TERM 1002 999601 - 999626 + T 88 -7.6 -4.87008 | opp_overlap 999601 CGTTAAATAATAAAA GAGGCACTAG TTAATT CTAGTACCTC TTTATTTTATCTCTT TERM 1003 999626 - 999601 - T 100 -9.8 -5.00196 | opp_overlap 999601 CGTTAAATAATAAAA GAGGCACTAG TTAATT CTAGTACCTC TTTATTTTATCTCTT trpS 1000622 - 999633 - | tryptophanyl-tRNA synthetase TERM 1004 1000730 - 1000740 + H 75 -4 -5.29782 | TACTACTAACAAAGG GATT AAT AATC TTTTTTATAAGTGTA USA300HOU_0955 1000917 - 1001312 + | transcriptional regulator Spx TERM 1005 1001357 - 1001380 + F 100 -12.6 -5.48054 | opp_overlap 1001361 TAAAAGATATGTCAA GCAACACTAT TTCT ATAGTGTTGC TTTTTTGGTTTTAAT mecA2 1001683 - 1002402 + | adaptor protein TERM 1006 1002450 - 1002433 - f 76 -9.9 -2.87794 | opp_overlap 1002433, overlap 1002432 1002435 AACGCACTATGAAAG GAGACTC TTTG GAGTCTC TTTTTTTATTGATTT TERM 1007 1002433 - 1002450 + F 100 -9.9 -5.9003 | opp_overlap 1002433 1002432 1002435 AACGCACTATGAAAG GAGACTC TTTG GAGTCTC TTTTTTTATTGATTT TERM 1008 1003792 - 1003781 - g 71 -3 -5.05228 | ACTAAATTAGAAAAA GTAT ATGT ATAC GCGCACCTAAAACAA TERM 1009 1004788 - 1004801 + G 77 -5.3 -4.87665 | CCAACCGTCAAATTC TAGTG ACTA CACTA TTTTTGTCGCTGAAG USA300HOU_0958 1003556 - 1005364 + | M03 family oligopeptidase F TERM 1010 1005535 - 1005556 + T 100 -10.2 -5.86465 | ATCCCCTTTGTTTAG CGTCGTGT ATTCAG ACACGACG TTTTTTTATGTTCTT TERM 1011 1005779 - 1005818 + T 70 -4.4 -4.88786 | gap 1, opp_overlap 1005784, overlap 1005784 AAATTAAGAGTCAGT AAAAAGACCTCGTTACATT TAT GGTGTA-CGAGGTCTTTAA TTTATTTATTTTGAT TERM 1012 1005813 - 1005784 - T 82 -7.3 -4.76644 | gap 1, opp_overlap 1005784 1005779 AAGAGTCAGTAAAAA GACCTCGTTACA TTTATGG TGTA-CGAGGTC TTTAATTTATTTATT TERM 1013 1005784 - 1005813 + T 84 -8.7 -4.30977 | gap 1, opp_overlap 1005784, overlap 1005779 AAGAGTCAGTAAAAA GACCTCGTTACATT TAT GGTGTA-CGAGGTC TTTAATTTATTTATT USA300HOU_0959 1006630 - 1005824 - | hypothetical protein USA300HOU_0960 1007018 - 1006653 - | globin TERM 1014 1007138 - 1007148 + r 78 -4 -5.4505 | TAATTTATATTGTTT GAAA GTG TTTC TTTTTTCTTGAAAAA USA300HOU_0961 1007715 - 1007122 - | hypothetical protein USA300HOU_0962 1007901 - 1008248 + | hypothetical protein relA1 1008265 - 1008900 + | GTP pyrophosphokinase ppnK 1008917 - 1009726 + | inorganic polyphosphate/ATP-NAD kinase TERM 1015 1009805 - 1009826 + G 100 -13.1 -4.09805 | opp_overlap 1009802 1009801 CTAAGAAGACAGTGA GCGCCATTA AAAA TAATGGCGC TTTAATTGTTAATGA rluA1 1009723 - 1010577 + | pseudouridylate synthase TERM 1016 1011353 - 1011372 + G 81 -8 -4.1585 | opp_overlap 1011332 AGAACATTTGCTTGG TATCATCA CGAT TGATGATA TTTTAGACGTTATGG TERM 1017 1011561 - 1011550 - g 71 -3 -5.07567 | GGAGATTCGAAAAAA CATT AGAA AATG TAGCGCTACTCGCAG mgtE 1010598 - 1011983 + | Mg2+/Co2+ transporter USA300HOU_0967 1011993 - 1013837 + | CPA2 family monovalent cation:proton (H+) antiporter-2 USA300HOU_0968 1013905 - 1014021 + | hypothetical protein fabI 1014115 - 1014885 + | enoyl-(acyl carrier protein) reductase TERM 1018 1014898 - 1014931 + T 100 -9.1 -5.50313 | gap 1, opp_overlap 1014898 1014896, overlap 1014925 TAATATCATTCAACA GCTTTGTTCACGTTAT TAT AT-ATGTGAGCAAAGC TTTTTTGCTTTTATA TERM 1019 1015010 - 1015045 + T 74 -9.1 -2.81055 | opp_overlap 1015010, overlap 1015007 1015039 TTATGCACAAAAAAA TCGCCTCAAAAGCTG TAGTTT CAACTTTTGATGCGA TAGTATCTTATATTC TERM 1020 1015045 - 1015010 - T 100 -11.3 -5.64274 | opp_overlap 1015010 1015007 1015039 TTATGCACAAAAAAA TCGCCTCAAAAGCTG TAGTTT CAACTTTTGATGCGA TAGTATCTTATATTC USA300HOU_0970 1016165 - 1015080 - | hypothetical protein USA300HOU_0971 1016507 - 1018075 + | AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter USA300HOU_0972 1018217 - 1018975 + | hypothetical protein USA300HOU_0973 1019169 - 1019678 + | hypothetical protein TERM 1021 1019723 - 1019766 + T 100 -19.4 -4.67048 | opp_overlap 1019723 1019728, overlap 1019728 TGTTTGAATTAATAA GAAAATGGTCATTTTTATTG AATG TAATAAAAATGACCATTTTC TTTATTTTAAAATAC TERM 1022 1019766 - 1019723 - T 100 -18.7 -3.81146 | opp_overlap 1019723 1019728, overlap 1019728 TGTTTGAATTAATAA GAAAATGGTCATTTTTATT GAATGT AATAAAAATGACCATTTTC TTTATTTTAAAATAC TERM 1023 1019728 - 1019761 + T 100 -13.5 -5.26247 | opp_overlap 1019723 1019728, overlap 1019723 GAATTAATAAGAAAA TGGTCATTTTTATTG AATG TAATAAAAATGACCA TTTTCTTTATTTTAA TERM 1024 1019761 - 1019728 - T 100 -12.8 -4.95167 | opp_overlap 1019728 1019723, overlap 1019723 GAATTAATAAGAAAA TGGTCATTTTTATT GAATGT AATAAAAATGACCA TTTTCTTTATTTTAA USA300HOU_0974 1020981 - 1019791 - | major facilitator transporter TERM 1025 1020732 - 1020743 + g 73 -4.4 -4.84017 | CTAAAATAAATCCAG TCGT TAAA ACGA TTTTTGTGCCGAATT USA300HOU_0975 1022134 - 1020959 - | diacylglycerol glucosyltransferase murE1 1022567 - 1024048 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase USA300HOU_0977 1024041 - 1024292 + | hypothetical protein prfC 1024292 - 1025854 + | peptide chain release factor 3 TERM 1026 1026087 - 1026114 + F 95 -8.5 -5.4182 | TAAATTGCTTAGTGA GACCTTTGCTA TTTATT TAGCATAGGTC TTTTTGTTTGTACTT USA300HOU_0979 1026156 - 1026959 + | hypothetical protein TERM 1027 1026972 - 1027001 + F 100 -10.2 -5.04222 | TAATTGATGTGAAGC GGACAATCTTAA TTTAGT TTAAGGTTGTCC TTTTTCATTTAATTG TERM 1028 1028164 - 1028154 - g 73 -4 -5.16237 | opp_overlap 1028146 AACTTGATGAAAAAA TTCA TGT TGAA GATAAACATAAACAA USA300HOU_0980 1027193 - 1029502 + | peptidase USA300HOU_0981 1029519 - 1030877 + | Trk family K+ transporter membrane protein TERM 1029 1030885 - 1030931 + F 100 -9.9 -5.4387 | gap 1, opp_overlap 1030885 1030883 TAGGATAATATAATA GCAATCTAAGTT-TAGTTAA TGTAGATT TTAACTGGAACTTAGATTGC TTTTTTAGTTTGTAT TERM 1030 1030931 - 1030885 - f 71 -7.7 -3.46859 | gap 1, opp_overlap 1030885, overlap 1030883 TAGGATAATATAATA GCAATCTAAGTT-TAGTTAA TGTAGATT TTAACTGGAACTTAGATTGC TTTTTTAGTTTGTAT USA300HOU_0982 1031016 - 1032527 + | 5'-nucleotidase TERM 1031 1032603 - 1032574 - T 81 -6.5 -5.03945 | opp_overlap 1032574 CAACAAGTATAAAAA CCTTTCTTAGAGA AGAT TATCTAGGAAAGG TTTTTAGAATTTTAA TERM 1032 1032574 - 1032603 + T 91 -8.7 -4.7416 | opp_overlap 1032574 CAACAAGTATAAAAA CCTTTCTTAGAGA AGAT TATCTAGGAAAGG TTTTTAGAATTTTAA TERM 1033 1032700 - 1032675 - T 100 -13.5 -5.72053 | opp_overlap 1032682 TAAGTAAACAAAAAA GCTAAAATGGT ATAT ACCATTTTAGC AAGTAACGGAAACGG USA300HOU_0983 1033583 - 1033014 - | competence protein TERM 1034 1034038 - 1034090 + H 79 -8.2 -3.93236 | opp_overlap 1034040 1034045, overlap 1034040 1034045 ATTCCATAACGCAAT C-ATAAAAGGACTATTCTTAACATCT CAT ACATGT-AAGAATAGTCCTTTAATCG TTTATGACATTAATC TERM 1035 1034087 - 1034040 - H 82 -11 -2.80511 | gap 1, opp_overlap 1034040 1034038 1034045, overlap 1034045 TCCATAACGCAATCA TAAAAGGACTATTCTTAACATCT CAT ACATGT-AAGAATAGTCCTTTAA TCGTTTATGACATTA TERM 1036 1034040 - 1034087 + H 83 -11 -3.02632 | gap 1, opp_overlap 1034040 1034045, overlap 1034038 1034045 TCCATAACGCAATCA TAAAAGGACTATTCTTAACATCT CAT ACATGT-AAGAATAGTCCTTTAA TCGTTTATGACATTA TERM 1037 1034045 - 1034082 + H 95 -10.9 -3.91197 | gap 1, opp_overlap 1034040 1034045, overlap 1034040 1034038 AACGCAATCATAAAA GGACTATTCTTAACATCT CAT ACATGT-AAGAATAGTCC TTTAATCGTTTATGA TERM 1038 1034082 - 1034045 - H 100 -10.9 -4.56093 | gap 1, opp_overlap 1034045 1034040 1034038, overlap 1034040 AACGCAATCATAAAA GGACTATTCTTAACATCT CAT ACATGT-AAGAATAGTCC TTTAATCGTTTATGA TERM 1039 1034885 - 1034903 + H 70 -8.2 -3.09349 | opp_overlap 1034885 ATTCTTCTTACTACA TCGATGTT GTG AGCATCGA TATATGTCTGATTTA TERM 1040 1035368 - 1035344 - H 93 -8.7 -5.00616 | opp_overlap 1035348 1035351 1035362 GTCGTGTTGAAAAAA TCAACGATAAC TCT GTTATTGTTGA CTTAACAATTATGGA TERM 1041 1036107 - 1036075 - H 86 -9.4 -3.94 | opp_overlap 1036065 1036075 TTAATGCTTAAATAA GCTTTTCTTAGA CGTATGTGT TCTAAGAAAAGC TTTTTTGCTTAAGAA TERM 1042 1036075 - 1036107 + H 100 -9.4 -5.26875 | gap 1, opp_overlap 1036075, overlap 1036065 TTAATGCTTAAATAA GCTTTTCTTAG-ACG TATG TGTTCTAAGAAAAGC TTTTTTGCTTAAGAA TERM 1043 1036484 - 1036446 - H 78 -3.2 -5.5604 | TTAAGCAATAAAAAA TAACCATCATTTCAAAAC TTT GACATAGAATGATGGTTA AAGAAAATCTCATTT TERM 1044 1036528 - 1036551 + H 100 -9.6 -4.93595 | TTAACGGGCTCATTA GGCGACATGT TCCT GCATGTCGTC TTTTTACATTTTTAT TERM 1045 1040412 - 1040356 - H 100 -11.2 -4.90471 | gap 1, opp_overlap 1040357 1040362, overlap 1040357 ATCCAAAAGATAAAA TTAAAAGCCAATCAATGGGAAATGTTG ACTT CAACA-CTCCGTTTGATTGGCTTTTAT ACTGTGTTACTAAGT TERM 1046 1040357 - 1040411 + H 100 -12.5 -2.77148 | gap 1, opp_overlap 1040356 1040357, overlap 1040362 TCCAAAAGATAAAAT TAAAAGCCAATCAATGGGAAATGTTG ACTT CAACACT-CCGTTTGATTGGCTTTTA TACTGTGTTACTAAG TERM 1047 1040411 - 1040357 - H 100 -14.7 -3.52656 | gap 1, opp_overlap 1040357 1040362, overlap 1040356 TCCAAAAGATAAAAT TAAAAGCCAATCAATGGGAAATGTTG ACTT CAACA-CTCCGTTTGATTGGCTTTTA TACTGTGTTACTAAG TERM 1048 1040362 - 1040406 + H 83 -8 -4.5477 | gap 1, opp_overlap 1040357 1040356, overlap 1040357 AAGATAAAATTAAAA GCCAATCAATGGGAAATGTTG ACTT CAACACT-CCGTTTGATTGGC TTTTATACTGTGTTA TERM 1049 1040963 - 1040973 + H 70 -4 -4.89477 | AAGTATAAAATTATT TTGT AAA ACAA TTTTGTTATTAAGAG USA300HOU_0984 1041289 - 1042770 + | glycosyltransferase TERM 1050 1042805 - 1042780 - f 100 -9.1 -5.38497 | opp_overlap 1042780 AGCTAAATGAAAAAA TCCTAGGTATT CATG AGTACCTAGGA TTTTTACGCATGATA TERM 1051 1042780 - 1042805 + F 100 -11.3 -4.60487 | opp_overlap 1042780 AGCTAAATGAAAAAA TCCTAGGTATT CATG AGTACCTAGGA TTTTTACGCATGATA TERM 1052 1042849 - 1042833 - f 100 -10.9 -5.90231 | ATAAATACAAAAAAA GAGAGGA TAG TCCTCTC AAACAATAGTTAATA USA300HOU_0985 1043692 - 1044651 + | iron (Fe3+) ABC transporter binding protein TERM 1053 1044693 - 1044655 - T 100 -11.8 -5.56372 | opp_overlap 1044655 AAAGCAAAATAAAAA TACAGCGCTACTCGTAAA TCA TATAAGAGTGGCGCTGTA TTTTTAATTATGTTT TERM 1054 1044655 - 1044693 + T 100 -14 -5.00412 | opp_overlap 1044655 AAAGCAAAATAAAAA TACAGCGCTACTCGTAAA TCA TATAAGAGTGGCGCTGTA TTTTTAATTATGTTT USA300HOU_0986 1044828 - 1044697 - | hypothetical protein USA300HOU_0987 1045107 - 1044892 - | hypothetical protein USA300HOU_0988 1045272 - 1045823 + | hypothetical protein TERM 1055 1045859 - 1045829 - T 85 -2.6 -5.95539 | gap 1, opp_overlap 1045829, overlap 1045830 TGTTAAATAAAAAAA CTCGACAGTTCGA TGTAAG TCGAT-TGCCGAG TAGTATCATTTTCTA menA 1046813 - 1045875 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase menF 1046986 - 1048356 + | isochorismate synthase TERM 1056 1049492 - 1049478 - g 70 -4.3 -4.731 | AATTGATTAAGAAAA CATCT GAAAA AGATG CATTATTTATTAGTA menD 1048343 - 1050016 + | 2-oxoglutarate decarboxylase TERM 1057 1050536 - 1050522 - g 82 -8.6 -4.06177 | overlap 1050514 1050511 CAAATAAGACAACAA CGATTG TCT CAATCG CCACATAAAATGGCC USA300HOU_0992 1050003 - 1050806 + | peptidase menB 1050799 - 1051620 + | naphthoate synthase TERM 1058 1051643 - 1051677 + T 95 -6.5 -5.86976 | gap 1 TGAATATGATATTAA GTCACTTG-CGTCGTT TATT AGCGACGATAGGTGGC TTTTTTATTTTATAA TERM 1059 1051830 - 1051797 - T 100 -9.6 -5.33848 | opp_overlap 1051797 1051796 ATTACAATGAAAAAA CGAGCTGGTGAGAA ATTGAA TTCTCGCCAACCCG CTTTATGAAGTGAAA sspC 1052188 - 1051859 - | I57 family staphostatin B sspB 1053407 - 1052226 - | C47 family staphopain B TERM 1060 1052819 - 1052839 + g 71 -3.3 -5.18409 | overlap 1052810 1052820 ACTCTTGTTTCAATT TTGCTGAAA CTG TTTTAGCAC TTTCTTTTTCTTTTA TERM 1061 1053098 - 1053116 + g 77 -9 -3.65314 | CGTCTTTTATAACTG GATAATAG TAA CTATTATC TTCTTCACCATTAAA TERM 1062 1053199 - 1053236 + g 70 -4.3 -4.77757 | gap 1, overlap 1053201 CTTTGTTTATCTAAT GCTTTAGCATAACCAGCA AAT TGTT-GTTGTGCTAGATC TTTTACTTTTTGAGG sspA 1054499 - 1053489 - | glutamyl endopeptidase TERM 1063 1054121 - 1054145 + g 70 -4.4 -4.67607 | gap 2, overlap 1054124 TTAAAGCATGAGGAT CACCGTGCGTAG CAT CTACG-ACG-TG TTTATTTGTTAAAAG TERM 1064 1054124 - 1054143 + g 73 -7.2 -3.94772 | gap 1, overlap 1054121 AAGCATGAGGATCAC CGTGCGTAG CAT CTACG-ACG TGTTTATTTGTTAAA TERM 1065 1054615 - 1054586 - R 83 -6.7 -5.13137 | TAAATAAATTAAAAA GTTTTTGTAAA GATTAGAG TTTACAAAAAC ATTAAGGGAATTAAA TERM 1066 1055134 - 1055111 - R 79 -8.2 -3.91072 | GGAAATCCTTACAAA TCCTTTACCG AATT CTGTAAAGGA TGAGCCTGGAACGAT TERM 1067 1058028 - 1058082 + r 100 -18.3 -3.66896 | opp_overlap 1058028 1058034, overlap 1058035 AATCATGAATTACAA GCAAAAGTAGCGGTGATTGTTAA AATTGATGG TAAACAATCACCGCTATTTTTGC TTGTGTATGTATAAA TERM 1068 1058082 - 1058028 - R 100 -16.1 -3.55145 | opp_overlap 1058028 1058035, overlap 1058034 AATCATGAATTACAA GCAAAAGTAGCGGTGATTGTTAA AATTGATGG TAAACAATCACCGCTATTTTTGC TTGTGTATGTATAAA TERM 1069 1058076 - 1058034 - R 83 -7.9 -4.52781 | opp_overlap 1058028 1058035, overlap 1058028 GAATTACAAGCAAAA GTAGCGGTGATTGTTAA AATTGATGG TAAACAATCACCGCTAT TTTTGCTTGTGTATG TERM 1070 1058035 - 1058075 + r 100 -11.4 -4.9755 | opp_overlap 1058034 1058028, overlap 1058028 AATTACAAGCAAAAG TAGCGGTGATTGTTAA AATTGATGG TAAACAATCACCGCTA TTTTTGCTTGTGTAT TERM 1071 1058098 - 1058155 + r 100 -16.5 -3.4382 | opp_overlap 1058101 1058102, overlap 1058100 1058102 1058111 TTGTGTATGTATAAA AAAGGGATCAAAGGTCATCCCCCATGA TTGA TAGTGGGGGATGACTTTTGATCCTATG TTCATGTTGCTTATT TERM 1072 1058100 - 1058153 + r 100 -19.1 -3.27602 | opp_overlap 1058101 1058102, overlap 1058098 1058102 1058111 GTGTATGTATAAAAA AGGGATCAAAGGTCATCCCCCATGA TTGA TAGTGGGGGATGACTTTTGATCCTA TGTTCATGTTGCTTA TERM 1073 1058152 - 1058101 - R 100 -16.1 -5.28176 | opp_overlap 1058100 1058098 1058102 1058111, overlap 1058102 TGTATGTATAAAAAA GGGATCAAAGGTCATCCCCCA TGATTGATAG TGGGGGATGACTTTTGATCCT ATGTTCATGTTGCTT TERM 1074 1058102 - 1058151 + r 100 -23.9 -3.1917 | opp_overlap 1058102 1058101, overlap 1058100 1058098 1058111 GTATGTATAAAAAAG GGATCAAAGGTCATCCCCCATGA TTGA TAGTGGGGGATGACTTTTGATCC TATGTTCATGTTGCT TERM 1075 1058151 - 1058102 - R 100 -19.6 -3.76182 | opp_overlap 1058100 1058098 1058102 1058111, overlap 1058101 GTATGTATAAAAAAG GGATCAAAGGTCATCCCCCA TGATTGATAG TGGGGGATGACTTTTGATCC TATGTTCATGTTGCT TERM 1076 1058111 - 1058142 + r 100 -13.8 -4.34947 | opp_overlap 1058102 1058101, overlap 1058102 1058100 1058098 AAAAAGGGATCAAAG GTCATCCCCCATGA TTGA TAGTGGGGGATGAC TTTTGATCCTATGTT USA300HOU_0997 1061936 - 1058166 - | bifunctional N-acetylmuramoyl-L-alanine amidase/mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TERM 1077 1059811 - 1059839 + g 81 -7.5 -4.41956 | opp_overlap 1059805, overlap 1059814 TGTTTATAAGTGCCC CAAGGTACTGAAT ATA ATTTAGTGCCTGG TTTTACTGTATATGT USA300HOU_0998 1062613 - 1062164 - | acetyltransferase TERM 1078 1062694 - 1062743 + r 77 -8.2 -3.84271 | opp_overlap 1062701 1062740, overlap 1062698 1062701 1062709 1062740 AAAAATAATTAGACA TAAAAAAGCTATAAAGATGATT GTTGTG AATCATCTTTATAGCTAATTAA TTATTAATGTTATAG TERM 1079 1062698 - 1062739 + r 77 -9 -3.57816 | opp_overlap 1062701, overlap 1062694 1062701 1062709 ATAATTAGACATAAA AAAGCTATAAAGATGATT GTTGTG AATCATCTTTATAGCTAA TTAATTATTAATGTT TERM 1080 1062701 - 1062736 + r 100 -15.1 -2.90373 | opp_overlap 1062701, overlap 1062698 1062694 1062709 ATTAGACATAAAAAA GCTATAAAGATGATT GTTGTG AATCATCTTTATAGC TAATTAATTATTAAT TERM 1081 1062736 - 1062701 - R 100 -15.1 -5.43414 | opp_overlap 1062701 1062698 1062694 1062709 ATTAGACATAAAAAA GCTATAAAGATGATT GTTGTG AATCATCTTTATAGC TAATTAATTATTAAT USA300HOU_0999 1063223 - 1062753 - | hypothetical protein USA300HOU_1000 1064488 - 1063271 - | hypothetical protein fmt1 1064939 - 1066132 + | carboxypeptidase TERM 1082 1066641 - 1066618 - T 100 -14 -5.54338 | opp_overlap 1066613 1066621 GAAGGAAAATAAAAA CCAGCTAACA AAAG TGTTAGCTGG TTAAACTTTACATTA qoxD 1066959 - 1066669 - | cytochrome c oxidase subunit IV qoxC 1067561 - 1066956 - | quinol oxidase subunit III qoxB 1069539 - 1067551 - | quinol oxidase subunit I TERM 1083 1069211 - 1069201 - G 74 -6.8 -4.42594 | TAAACCAAAGATAAA TGGC ATT GCCA TGAAGATAATCATGA qoxA 1070639 - 1069539 - | quinol oxidase subunit II TERM 1084 1070195 - 1070224 + g 77 -9.5 -3.16338 | overlap 1070193 1070192 CAACAGGACGATCTT TAGGGATTGTTAA TGTA TTAACAGTCTCTA TATGTTCATCTGGAT TERM 1085 1070475 - 1070462 - G 76 -3.8 -5.27938 | ACTTGTAAATAAAAA TGGC GAACAT GCCA AGTACAACGAAACAA USA300HOU_1006 1070941 - 1071063 + | hypothetical protein TERM 1086 1071193 - 1071147 - T 100 -17.1 -3.85209 | gap 1, opp_overlap 1071151 1071156, overlap 1071151 1071156 ATGAAGTTAGAATAA CAAATAAAATGGTAGCAAAACA TGTT CGTT-TGCTACCATTTTATTTG CAGTATAGTGATGAG TERM 1087 1071189 - 1071151 - T 100 -12.1 -4.52415 | gap 1, opp_overlap 1071151 1071156, overlap 1071147 1071156 AGTTAGAATAACAAA TAAAATGGTAGCAAAACA TGTT CGTT-TGCTACCATTTTA TTTGCAGTATAGTGA TERM 1088 1071151 - 1071189 + T 95 -12.1 -3.64599 | opp_overlap 1071151 1071147 1071156, overlap 1071156 AGTTAGAATAACAAA TAAAATGGTAGCAAA ACATGTTCG TTTGCTACCATTTTA TTTGCAGTATAGTGA TERM 1089 1071184 - 1071156 - T 90 -7.6 -5.18297 | gap 1, opp_overlap 1071151 1071156, overlap 1071151 1071147 GAATAACAAATAAAA TGGTAGCAAAACA TGTT CGTT-TGCTACCA TTTTATTTGCAGTAT TERM 1090 1071156 - 1071184 + T 88 -7.6 -4.89521 | opp_overlap 1071156 1071151 1071147, overlap 1071151 GAATAACAAATAAAA TGGTAGCAAA ACATGTTCG TTTGCTACCA TTTTATTTGCAGTAT USA300HOU_1007 1071528 - 1071211 - | hypothetical protein TERM 1091 1071900 - 1071916 + r 79 -8 -4.20367 | TGCACATTATTGTAA GCTGAC TTTTC GTCAGC TTCTTTGTTGGGGCC TERM 1092 1072016 - 1072074 + r 78 -10.5 -2.58714 | opp_overlap 1072016 1072021, overlap 1072021 GAGCCAAGTACAAAG TGAAATGCTCCCTTCAAAGCCTTCATT TATTC AATGTCTACTTTGAAGGGAGCATTTGA TCGATTAATGTCCCA TERM 1093 1072074 - 1072016 - R 100 -12.7 -3.03661 | opp_overlap 1072016 1072021, overlap 1072021 GAGCCAAGTACAAAG TGAAATGCTCCCTTCAAAGCCTTCATT TATTC AATGTCTACTTTGAAGGGAGCATTTGA TCGATTAATGTCCCA TERM 1094 1072021 - 1072069 + r 89 -10.4 -3.80114 | opp_overlap 1072016 1072021, overlap 1072016 AAGTACAAAGTGAAA TGCTCCCTTCAAAGCCTTCATT TATTC AATGTCTACTTTGAAGGGAGCA TTTGATCGATTAATG TERM 1095 1072069 - 1072021 - R 100 -12.6 -3.90889 | opp_overlap 1072021 1072016, overlap 1072016 AAGTACAAAGTGAAA TGCTCCCTTCAAAGCCTTCATT TATTC AATGTCTACTTTGAAGGGAGCA TTTGATCGATTAATG TERM 1096 1072259 - 1072247 - R 90 -7.7 -5.1925 | opp_overlap 1072246 CTAGAATTGAAAAAA GCTTG TTA CAAGC GAATTTTCGTTCAGT folD 1073193 - 1072333 - | bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase purE 1073394 - 1073876 + | 5-(carboxyamino)imidazole ribonucleotide mutase purK 1073863 - 1074987 + | phosphoribosylaminoimidazole carboxylase ATPase subunit purC 1074991 - 1075695 + | phosphoribosylaminoimidazole-succinocarboxamide synthase purS 1075695 - 1075958 + | phosphoribosylformylglycinamidine synthase TERM 1097 1076537 - 1076521 - g 81 -10.9 -2.61341 | overlap 1076517 GAAAAAGGCAATGTA TGTGGCA TGA TGCCACA TCCTGAAAGAGCTTT purQ 1075960 - 1076631 + | phosphoribosylformylglycinamidine synthase I TERM 1098 1078161 - 1078143 - g 95 -9 -4.8743 | opp_overlap 1078147, overlap 1078153 CTGAAAAGAAAGAAA TCTATCAA CAG TTGATAGA TTCAACGAAAGGTAT purL 1076624 - 1078813 + | phosphoribosylformylglycinamidine synthase II purF 1078792 - 1080276 + | amidophosphoribosyltransferase purM 1080269 - 1081297 + | phosphoribosylaminoimidazole synthetase TERM 1099 1082661 - 1082646 - g 71 -7.6 -3.53563 | opp_overlap 1082645 1082646 1082648 ACAGTTGCGGTTAAA CACATG AATC CATGTG GTGTTGGTATCGGTG purH 1081872 - 1083359 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1100 1084569 - 1084557 - g 72 -2.7 -5.38047 | GACGCATACAAAAAA GTATC ACA AATAC AAAGTGACCATTTAT purD 1083381 - 1084628 + | phosphoribosylamine--glycine ligase TERM 1101 1084689 - 1084652 - T 76 -10.1 -2.82453 | opp_overlap 1084652, overlap 1084649 1084643 AAAATACTAAGATTA GCTATGAACGAATCTAT AACG ATAGATTTTTTCATAGC TTTTTTAGTTGTAGA TERM 1102 1084652 - 1084689 + T 100 -12.3 -5.32944 | opp_overlap 1084649 1084643 1084652 AAAATACTAAGATTA GCTATGAACGAATCTAT AACG ATAGATTTTTTCATAGC TTTTTTAGTTGTAGA TERM 1103 1084760 - 1084810 + T 72 -4.9 -4.97158 | gap 1, opp_overlap 1084760 ATATGTAATACAAAA GAGGCGCCAC-AACATGTTT GGATGAACAAAA TAACATGTTTGTGGCACCTC TTTTGTTTAGTATGG TERM 1104 1084810 - 1084760 - T 82 -7.1 -4.69326 | gap 1, opp_overlap 1084760 ATATGTAATACAAAA GAGGCGCCAC-AACATGTTT GGATGAACAAAA TAACATGTTTGTGGCACCTC TTTTGTTTAGTATGG USA300HOU_1019 1085699 - 1084893 - | ABC transporter ATP-binding protein USA300HOU_1020 1087092 - 1085692 - | ABC transporter ATP-binding protein TERM 1105 1086190 - 1086170 - G 71 -6.3 -4.11216 | opp_overlap 1086181, overlap 1086174 CGCTGATTTTCAAAA TAAACATCA CCT TGATATTTA ATCAATTGCATAATT USA300HOU_1021 1087682 - 1087107 - | hypothetical protein TERM 1106 1087735 - 1087707 - H 100 -10.3 -5.7946 | CTCCTAATAAAAAAA CGCACAACCATCC ATA GGAAAGTTATGCG TTCACAATATATATT TERM 1107 1088226 - 1088264 + H 100 -14.8 -2.75561 | opp_overlap 1088231, overlap 1088221 1088231 CGCCGAGCACATGCA TAAAATCCCCTAACAACT AAA AGTTGTAAGGGGATTTAA ATTAATTTAGTGTAT TERM 1108 1088259 - 1088231 - H 100 -14.7 -4.45485 | opp_overlap 1088226 1088221 1088231 AGCACATGCATAAAA TCCCCTAACAACT AAA AGTTGTAAGGGGA TTTAAATTAATTTAG TERM 1109 1088231 - 1088259 + H 100 -14.7 -3.83214 | opp_overlap 1088231, overlap 1088226 1088221 AGCACATGCATAAAA TCCCCTAACAACT AAA AGTTGTAAGGGGA TTTAAATTAATTTAG TERM 1110 1088858 - 1088869 + G 74 -3 -5.2204 | ATTAAGTATGACTAT GATA TTTC TATC TTTTTCTTAGTTATC USA300HOU_1022 1088552 - 1089847 + | hypothetical protein USA300HOU_1023 1090272 - 1091444 + | hypothetical protein USA300HOU_1024 1091498 - 1092040 + | hypothetical protein TERM 1111 1092054 - 1092068 + F 77 -7.2 -4.25104 | opp_overlap 1092053 AGGTGCTATAATAGT TTTGCA ATT TGCAAA TTTTACTGAAACCGG ptsH 1092194 - 1092460 + | phosphocarrier protein HPr TERM 1112 1092783 - 1092759 - g 100 -13.7 -4.80167 | GATTAAAAATGAAAA CGCTAATGCTG CTA CAGCATTAACG GATGTAACAACACAA TERM 1113 1093718 - 1093704 - g 76 -2.8 -5.44638 | AGAAGAAAAAGAAAA CCTTAA AAA TGAAGG TCATGACATTTCGGA ptsI 1092463 - 1094181 + | PTS family phosphoenolpyruvate (PEP) porter component I TERM 1114 1094212 - 1094256 + T 100 -12.4 -5.43621 | opp_overlap 1094215, overlap 1094215 GACAGAATTATAAAT AAACCCGAAGTATTCATTGT AAGTA ATTATGAATACTTCGGGTTC TTTTTTATGATTTAT TERM 1115 1094253 - 1094215 - T 100 -12 -4.63526 | opp_overlap 1094215 1094212 AGAATTATAAATAAA CCCGAAGTATTCAT TGTAAGTAATT ATGAATACTTCGGG TTCTTTTTTATGATT TERM 1116 1094215 - 1094253 + T 100 -14.1 -4.75967 | opp_overlap 1094215, overlap 1094212 AGAATTATAAATAAA CCCGAAGTATTCATTGT AAGTA ATTATGAATACTTCGGG TTCTTTTTTATGATT USA300HOU_1027 1094651 - 1094418 - | glutaredoxin cydA 1094849 - 1096210 + | cytochrome d ubiquinol oxidase subunit I cydB 1096207 - 1097226 + | cytochrome d ubiquinol oxidase subunit II USA300HOU_1030 1097359 - 1098021 + | Trk family K+ transporter NAD+ binding protein TERM 1117 1098092 - 1098115 + T 72 -6.8 -4.15044 | opp_overlap 1098098, overlap 1098094 1098098 AACTTACATTGTCTG TAGAAATTGG GAAT CCAATTTCTC TTTGTTGGGGCCCAC TERM 1118 1098094 - 1098113 + T 81 -9.4 -3.6761 | opp_overlap 1098098, overlap 1098092 1098098 CTTACATTGTCTGTA GAAATTGG GAAT CCAATTTC TCTTTGTTGGGGCCC TERM 1119 1098218 - 1098206 - T 90 -7.7 -5.1925 | opp_overlap 1098205 CTAGAATTGAAAAAA GCTTG TTA CAAGC GCATTTTCGTTCAGT USA300HOU_1031 1100067 - 1098370 - | hypothetical protein USA300HOU_1032 1100285 - 1100067 - | hypothetical protein USA300HOU_1033 1100436 - 1100314 - | hypothetical protein TERM 1120 1100463 - 1100446 - R 72 -4.2 -5.0538 | GTTCATTTTAAAAAA TTAGTG AAATAA CACTAA AATTTCAGTTAAATC TERM 1121 1100742 - 1100716 - R 81 -7.4 -4.67038 | opp_overlap 1100716 GTTGTAAAAGGAAAA GCTTAGGACA TCATATT TATCCTAAGC TTTGATAATTAGAAA pdf1 1101317 - 1100766 - | peptide deformylase USA300HOU_1035 1101682 - 1102308 + | hypothetical protein TERM 1122 1103044 - 1103070 + G 84 -8 -4.56133 | opp_overlap 1103043 ACGAAGGTATTAACT TTGCAGCAGCTT ATA AAGCACCTGCAA TTTTCGTTATTCAAA pdhA 1102479 - 1103591 + | pyruvate dehydrogenase (acetyl-transferring) alpha subunit TERM 1123 1104528 - 1104512 - g 89 -9.5 -4.19953 | CACTCAAGCTGAAAA TGTTTGG TTA CCAAACA AAAATGACATCATCG phdB 1103595 - 1104572 + | pyruvate dehydrogenase (acetyl-transferring) beta subunit TERM 1124 1105163 - 1105151 - g 73 -7.7 -3.72141 | AGATGCATACTTAAA TGGTG GTG CACCA ACAGCTTCAAATGAA TERM 1125 1105236 - 1105216 - g 82 -9.7 -3.56366 | overlap 1105203 1105199 1105206 AAGAAGTTGCTGAAA CTCCTGCAG CAC CTGCAGCAG TAACATTAGAAGGCG pdhC 1104663 - 1105955 + | branched-chain alpha-keto acid dehydrogenase subunit E2 pdhD 1105959 - 1107365 + | dihydrolipoamide dehydrogenase TERM 1126 1107400 - 1107419 + F 100 -10 -5.80951 | opp_overlap 1107400 ATTCAGTCATTAAAA GCTGTAGC ATAT GCTACGGC TTTTTTGTTTTAGGT TERM 1127 1107419 - 1107400 - f 79 -7.8 -4.28548 | opp_overlap 1107400 ATTCAGTCATTAAAA GCTGTAGC ATAT GCTACGGC TTTTTTGTTTTAGGT USA300HOU_1040 1107533 - 1107808 + | hypothetical protein USA300HOU_1041 1107952 - 1108491 + | transcriptional regulator potA 1108504 - 1109598 + | spermidine/putrescine ABC transporter ATP-binding protein potD 1111203 - 1112276 + | spermidine/putrescine ABC transporter ATP-binding protein USA300HOU_1044 1112350 - 1113369 + | hypothetical protein TERM 1128 1113422 - 1113382 - f 100 -12.8 -2.83701 | opp_overlap 1113382 TAAATATTGATGATA CCCAGATTAGTAAGCAGA GGTCT TTTGCTTATTAATCTGGG TTTTTATATGAGGTT TERM 1129 1113382 - 1113422 + F 100 -17.9 -4.98522 | opp_overlap 1113382 TAAATATTGATGATA CCCAGATTAGTAAGCAGAG GTC TTTTGCTTATTAATCTGGG TTTTTATATGAGGTT USA300HOU_1045 1113652 - 1114071 + | hypothetical protein TERM 1130 1114094 - 1114144 + F 73 -3.7 -5.29885 | gap 2, opp_overlap 1114094 ATAGCAAAAGAAAAA CCATTAAAATGTTAAGTTGTTAATT ATT AGATA-CAACC-AACATTTTAATGG TTTTATTTTTAACTT TERM 1131 1114144 - 1114094 - f 88 -5.9 -5.52079 | gap 1, opp_overlap 1114094 ATAGCAAAAGAAAAA CCATTAAAATGTTAAGTTGT TAATTATTAGAT ACAACC-AACATTTTAATGG TTTTATTTTTAACTT USA300HOU_1046 1114110 - 1114214 + | hypothetical protein TERM 1132 1115555 - 1115570 + F 80 -6.2 -4.88646 | opp_overlap 1115548 1115555 1115554 TAACCTAATAAAATG TTTAGG TCAA CCTAAA TTTATTTTAATTTTT TERM 1133 1115668 - 1115637 - f 88 -5.9 -5.54885 | opp_overlap 1115635 1115637 AATATTAAGAAAAAA GAGCACGAAATCA TGGATG TGATTAAGTGCTC TATTATTTAAACAAA TERM 1134 1117292 - 1117341 + F 82 -11.1 -2.55544 | gap 1, opp_overlap 1117288 1117297, overlap 1117297 AATCAAAATAATTAC CAAAAGCGTAATATGTAGTCCTAA CAA TTAGG-TAACATATTACGCTTTTA TACCTTAAATAATAA TERM 1135 1117297 - 1117336 + F 100 -11 -4.47551 | gap 1, opp_overlap 1117288 1117297, overlap 1117292 AAATAATTACCAAAA GCGTAATATGTAGTCCTAA CAA TTAGG-TAACATATTACGC TTTTATACCTTAAAT TERM 1136 1117336 - 1117297 - f 88 -8.8 -4.40037 | gap 1, opp_overlap 1117297 1117292, overlap 1117288 AAATAATTACCAAAA GCGTAATATGTAGTCCTAA CAA TTAGGTA-ACATATTACGC TTTTATACCTTAAAT TERM 1137 1117400 - 1117386 - f 71 -7.2 -3.77014 | opp_overlap 1117386 ATAAAACCAGTTAAA TGTTCA TCA TGAACA TGTGTGGTCTTAAAT TERM 1138 1118493 - 1118513 + G 73 -7.7 -3.75332 | GTGAAAAACTTCCGT GTAACTAAA ATC TTTGGTTAC TTTGGATTAAAACGT USA300HOU_1047 1117734 - 1119581 + | GTP-binding protein TypA TERM 1139 1119635 - 1119592 - T 77 -8.3 -3.73359 | opp_overlap 1119597, overlap 1119597 AATAATTTAACATAA TAAAAGAGAAGCTGAGCGA TGAAAG TTGCTTAGCTTCTCTTTTG GCATATAATATTTGA TERM 1140 1119597 - 1119630 + T 100 -13.3 -4.17657 | opp_overlap 1119592 1119597 TTTAACATAATAAAA GAGAAGCTGAGCGAT GAAA GTTGCTTAGCTTCTC TTTTGGCATATAATA TERM 1141 1119630 - 1119597 - T 90 -8.2 -4.90381 | opp_overlap 1119597, overlap 1119592 TTTAACATAATAAAA GAGAAGCTGAGCGA TGAAAG TTGCTTAGCTTCTC TTTTGGCATATAATA USA300HOU_1048 1119888 - 1119721 - | hypothetical protein USA300HOU_1049 1120372 - 1119890 - | hypothetical protein USA300HOU_1050 1120513 - 1120788 + | hypothetical protein TERM 1142 1120869 - 1120925 + F 70 -8.2 -3.08314 | overlap 1120873 1120878 TTTATAGTTTAATTA CTGATTAAAGTGGCTGTTATGTTGTC TTCTT GATGACATGTCAGTCACTTTTATTGG GTTTTAGCAATTCAC TERM 1143 1120878 - 1120916 + F 82 -7.5 -4.77719 | overlap 1120873 1120869 TAATTACTGATTAAA GTGGCTGTTATGTTGTC TTCTT GATGACATGTCAGTCAC TTTTATTGGGTTTTA USA300HOU_1051 1121090 - 1122328 + | FtsW/RodA/SpoVE family cell division protein TERM 1144 1122436 - 1122468 + F 88 -5.7 -5.52079 | opp_overlap 1122436 1122440 GATGAGTTCAATAAC GGAAGTTAGGC AACCAAACAAC GCTTAACTTCC TTTTTGTTTTGATAT TERM 1145 1123379 - 1123365 - g 70 -7.1 -3.84246 | CCGCTAATGATTAAA GCCAC AAGTG GTGGC GGCGGTAAAGGTATG pycA 1122882 - 1126334 + | pyruvate carboxylase TERM 1146 1126387 - 1126346 - T 100 -12.5 -4.42667 | opp_overlap 1126351, overlap 1126351 CTAAAATGATTAAAA TAAAACGAGATTACACAAC AATT GACGTGTAATCTCGTTTTT ACATGGCTTAGGTTT TERM 1147 1126382 - 1126351 - T 100 -12.4 -5.14626 | opp_overlap 1126351, overlap 1126346 ATGATTAAAATAAAA CGAGATTACACAAC AATT GACGTGTAATCTCG TTTTTACATGGCTTA TERM 1148 1126351 - 1126382 + T 100 -10.2 -4.68424 | opp_overlap 1126346 1126351 ATGATTAAAATAAAA CGAGATTACACAAC AATT GACGTGTAATCTCG TTTTTACATGGCTTA TERM 1149 1126422 - 1126466 + T 100 -13.2 -5.66229 | opp_overlap 1126427, overlap 1126427 TTAAATATTGATATA AAAAACCGTAATTTTAATGG GCGTG CCATTAAAATTACGGTTTGC TTTTTTGTTATTGCT TERM 1150 1126461 - 1126427 - T 100 -17.5 -5.38047 | opp_overlap 1126422 1126427 TATTGATATAAAAAA CCGTAATTTTAATGG GCGTG CCATTAAAATTACGG TTTGCTTTTTTGTTA TERM 1151 1126427 - 1126461 + T 100 -17.5 -4.51301 | opp_overlap 1126427, overlap 1126422 TATTGATATAAAAAA CCGTAATTTTAATGG GCGTG CCATTAAAATTACGG TTTGCTTTTTTGTTA ctaA 1127544 - 1126474 - | cytochrome oxidase assembly protein TERM 1152 1126880 - 1126909 + g 70 -3.7 -4.85129 | gap 1 CAATAAATGATGATT GCCATTAACCATGT TAA ACGTC-TTAATGGC TTTTTGATATATAAT TERM 1153 1128357 - 1128370 + G 90 -8.1 -5.00412 | GACAAATTAGTTTAA CAGCG ATTG CGCTG TTTTTAGTTGTATTT TERM 1154 1128671 - 1128689 + G 82 -9 -4.05583 | opp_overlap 1128670 CAAATGTTTATATAT TCACTAAA TTA TTTAGTGA TCTTTTTCGTGTTAG ctaB 1127825 - 1128736 + | protoheme IX farnesyltransferase USA300HOU_1055 1128761 - 1129222 + | hypothetical protein TERM 1155 1129246 - 1129272 + F 86 -7.4 -5.14563 | opp_overlap 1129247, overlap 1129247 TACAAATGATACTAA TCTGATAAGGCA ATT TGTTTTATCAGG TTTTTTGATGAAGAA TERM 1156 1129247 - 1129271 + F 77 -8.7 -3.68256 | opp_overlap 1129247, overlap 1129246 ACAAATGATACTAAT CTGATAAGGCA ATT TGTTTTATCAG GTTTTTTGATGAAGA TERM 1157 1129292 - 1129331 + F 88 -5.9 -5.65177 | gap 1, overlap 1129293 TTGATGAAGAATAGT CGGACAGTTGATGGTATT CATTT GATACC-TTAACTGTCCA TTTTTTTATACATAT TERM 1158 1129293 - 1129330 + F 86 -9.4 -3.9748 | gap 1, overlap 1129292 TGATGAAGAATAGTC GGACAGTTGATGGTATT CATTT GATACC-TTAACTGTCC ATTTTTTTATACATA TERM 1159 1130300 - 1130284 - g 72 -5.9 -4.42667 | TTAAAAGGATTAAAA CCATTGA AAA TCAATAG CGATTTAGCACATAT USA300HOU_1056 1129549 - 1130586 + | hypothetical protein USA300HOU_1058 1130602 - 1131036 + | hypothetical protein TERM 1160 1131082 - 1131095 + F 71 -2.4 -5.47159 | GAAACCACTAACTAG CATC TGACTC GATG TTTTTATTTATTCGG TERM 1161 1131458 - 1131448 - f 72 -5.4 -4.82901 | TGTTCTTTATAAAAA CTTG TCA CAAG AACGCGGTCAAATGC USA300HOU_1059 1132264 - 1132518 + | hypothetical protein USA300HOU_1060 1132910 - 1132521 - | hypothetical protein USA300HOU_1061 1132980 - 1133522 + | site-specific DNA-methyltransferase (adenine-specific) coaD 1133524 - 1134006 + | pantetheine-phosphate adenylyltransferase TERM 1162 1134060 - 1134013 - T 90 -8 -5.1963 | opp_overlap 1134016, overlap 1134016 TTTAAGTAATAAAAA TAACAGTATTTTAGGTTTATCA TGGT TTACAATCCTAAAATACTGTTT TCATTTGTTAACGAT TERM 1163 1134057 - 1134016 - T 100 -9.7 -4.67357 | opp_overlap 1134016, overlap 1134013 AAGTAATAAAAATAA CAGTATTTTAGGTTTATCA TGGT TTACAATCCTAAAATACTG TTTTCATTTGTTAAC TERM 1164 1134016 - 1134057 + T 81 -7.5 -4.67942 | opp_overlap 1134016 1134013 AAGTAATAAAAATAA CAGTATTTTAGGTTTATCA TGGT TTACAATCCTAAAATACTG TTTTCATTTGTTAAC USA300HOU_1063 1135207 - 1134068 - | hypothetical protein TERM 1165 1134799 - 1134817 + g 77 -6 -4.82678 | ATTCGCTAATGATAC GAGGGTAG CTT TTACCTTC TTTTACTTTTTGTGA TERM 1166 1136167 - 1136198 + r 100 -13.2 -5.0916 | opp_overlap 1136167 TACTCAATATAAAAA GTCCCGCTTAAAAT GATT GTTTTAAGTGGGAC TTTTTATATTGCGAA TERM 1167 1136198 - 1136167 - R 100 -10.3 -5.10767 | opp_overlap 1136167 TACTCAATATAAAAA GTCCCGCTTAAAA TGATTG TTTTAAGTGGGAC TTTTTATATTGCGAA TERM 1168 1136216 - 1136259 + r 75 -9.7 -2.53134 | opp_overlap 1136217, overlap 1136215 1136214 1136210 TTTATATTGCGAAAA ATAATTGGCGAACGAGGTA ACTGGA TACCTCATCCGCCAATTAA AATTTGTTAATTTAA TERM 1169 1136258 - 1136217 - R 100 -17.6 -4.61231 | opp_overlap 1136216 1136215 1136214 1136210 TTATATTGCGAAAAA TAATTGGCGAACGAGGTA ACTGGA TACCTCATCCGCCAATTA AAATTTGTTAATTTA TERM 1170 1136679 - 1136697 + r 71 -3.1 -5.26119 | CGTTTTGTCTTTACC TGACTCA CTAGA TGCGTCA TTTTCTTTTTCAACA TERM 1171 1138290 - 1138266 - R 73 -9.5 -2.64794 | opp_overlap 1138263 1138266 1138262, overlap 1138270 1138274 CCTAATTGTATATTA TCAACTGATAA TCA TTATCAATTGA TTACTTGTATTGTAC TERM 1172 1138388 - 1138347 - R 100 -11.3 -5.626 | gap 1, opp_overlap 1138330 1138329 1138347 1138350 TATTTTATAAAAAAA TAACCTATGTTATAGATTAT GAA AT-ATCTATGACATAGGTTA AATAAAATTTAAAAT TERM 1173 1138350 - 1138385 + r 85 -10.8 -3.08966 | gap 1, opp_overlap 1138347, overlap 1138329 1138347 TTTATAAAAAAATAA CCTATGTTATAGATTAT GAA AT-ATCTATGACATAGG TTAAATAAAATTTAA isdA 1139490 - 1138438 - | iron (Fe2+)-regulated surface determinant protein IsdA isdC 1139699 - 1140382 + | iron (Fe2+)-regulated surface determinant protein IsdC TERM 1174 1140471 - 1140504 + G 87 -10.5 -3.73775 | gap 1, overlap 1140472 AATGATTGGTAGCGT GTTGGCTGATGAGATA AAA TATC-CATCAGCCAAA TTTAATCAACCTGAA TERM 1175 1140472 - 1140503 + G 93 -14 -2.84051 | gap 1, overlap 1140471 ATGATTGGTAGCGTG TTGGCTGATGAGATA AAA TATC-CATCAGCCAA ATTTAATCAACCTGA USA300HOU_1066 1140382 - 1141458 + | hypothetical protein isdE 1141455 - 1142333 + | iron (Fe+3) ABC transporter binding protein TERM 1176 1142632 - 1142652 + G 72 -6.1 -4.30477 | TTGGCGTTTCCTCAG GTGCACTTA TAA TGAGAGCAC TTTGTATGTTGTTTA isdF 1142346 - 1143311 + | iron (Fe3+) ABC transporter membrane protein isdG2 1144126 - 1144449 + | heme-degrading monooxygenase IsdG TERM 1177 1144508 - 1144535 + G 83 -5 -5.52384 | gap 1 TGTTAGCTTTTGTAA CGACCATACAT GATACCG ATG-ATGGTCG TTTTTTTAATGAACA USA300HOU_1070 1144486 - 1144593 + | hypothetical protein USA300HOU_1071 1144638 - 1144736 + | hypothetical protein TERM 1178 1144784 - 1144798 + F 82 -4.4 -5.61881 | opp_overlap 1144797 CAAATGTTTTCATCT TATTAA TGA TTAATA TTTTTATTTTTAAAA spoU/trmH 1144833 - 1145573 + | TrmH family rRNA methyltransferase TERM 1179 1145850 - 1145885 + F 100 -10.7 -5.63103 | gap 1, opp_overlap 1145850 1145849 1145852, overlap 1145843 TGGTACCACGGAAAT GACTTTCGTCC-CTTA TTTTT TAAGAGGATGAAAGTC TTTTTTTAGTTAAAC pheS 1145954 - 1147012 + | phenylalanyl-tRNA synthetase subunit alpha TERM 1180 1147599 - 1147589 - g 71 -3.2 -5.1764 | TATATAATACAAAAA TGAC TAA GCCA GAGACAACATCAAAT TERM 1181 1148623 - 1148593 - g 73 -6.9 -3.91716 | opp_overlap 1148622, overlap 1148590 1148596 TTAGTTTCTAAAGAA GATGCTACTGCAT TTTCG ATGCAACAGCGTC AAACAATTGATTTAT pheT1 1147012 - 1149414 + | phenylalanine--tRNA ligase beta subunit TERM 1182 1149419 - 1149476 + T 87 -8.1 -4.74103 | gap 1, opp_overlap 1149424, overlap 1149424 TTATTAGATAATGAT TTAAACCCCATGTATAAGGATATC TGAAGTAGATT GATATCCCTA-ACATGGGGTTTTA TTTTTGGGTTCACCA TERM 1183 1149471 - 1149424 - T 89 -10.2 -3.73386 | gap 1, opp_overlap 1149419 1149424 AGATAATGATTTAAA CCCCATGTATAAGGATATC TGAAGTAGATT GATATCCCTA-ACATGGGG TTTTATTTTTGGGTT TERM 1184 1149424 - 1149471 + T 90 -8 -5.29885 | gap 1, opp_overlap 1149424, overlap 1149419 AGATAATGATTTAAA CCCCATGTATAAGGATATC TGAAGTAGATT GATATCCCTA-ACATGGGG TTTTATTTTTGGGTT TERM 1185 1149594 - 1149567 - T 74 -6.4 -4.43859 | gap 1, opp_overlap 1149567 1149562, overlap 1149585 CACAACTGCATAAAA GCCTCTAATGATT AAA AATCAA-AGAGGC TTTAAAATTTTTTGG rnhC 1150541 - 1149585 - | ribonuclease HIII TERM 1186 1149826 - 1149836 + g 76 -4 -5.34857 | GACTTCGATTCTCCT TTTG TTT CAAA TTTTGTTTTCTTTGG TERM 1187 1149973 - 1149988 + g 70 -4 -4.88407 | TTGATGGCTTCATTA TGAAGG GCAG CTTTCA TTTTTACTTGAGTCC USA300HOU_1076 1150893 - 1151159 + | hypothetical protein USA300HOU_1077 1151160 - 1151681 + | hypothetical protein dinB 1151754 - 1153466 + | hypothetical protein USA300HOU_1079 1153476 - 1155824 + | recombination and DNA strand exchange inhibitor protein trxA 1155997 - 1156311 + | thioredoxin TERM 1188 1156329 - 1156358 + T 100 -8.6 -5.48623 | opp_overlap 1156319 TACAACCAATGACGA CTGGGGCATTTC TTTAAT GAATTGCTCCAG TTTTTGTTTGTGTTT USA300HOU_1081 1156469 - 1156374 - | hypothetical protein TERM 1189 1157269 - 1157283 + G 71 -8.6 -3.04715 | overlap 1157268 AGCGAATGTTAACTG CAAGTG AAT CACTTG ATTTTGAACGGGCTA uvrC 1156635 - 1158416 + | excinuclease ABC subunit C TERM 1190 1158452 - 1158418 - f 76 -6.4 -4.56969 | opp_overlap 1158418, overlap 1158421 1158422 AATTGCATAAATAAA TTACTGGGCGTGAGAA TCA TTCTCATGCCCCAAAA TATATGAAATAATGT TERM 1191 1158449 - 1158421 - f 72 -8.1 -3.22499 | opp_overlap 1158418, overlap 1158418 1158422 TGCATAAATAAATTA CTGGGCGTGAGAA TCA TTCTCATGCCCCA AAATATATGAAATAA TERM 1192 1158448 - 1158422 - f 73 -9.4 -2.52776 | opp_overlap 1158418, overlap 1158421 1158418 GCATAAATAAATTAC TGGGCGTGAGAA TCA TTCTCATGCCCC AAAATATATGAAATA TERM 1193 1158479 - 1158489 + F 82 -4 -5.50499 | ATGTTACAATATGGT TAAC AAA GTTA TTTTTTTGAATGTAC sdhC 1158740 - 1159354 + | succinate dehydrogenase, cytochrome b558 subunit TERM 1194 1160831 - 1160819 - g 84 -6.3 -5.0925 | CGTGAAAATGAAAAA CTGTT AGA AACAG ATAAAAAGATTGTTG sdhA1 1159406 - 1161172 + | succinate dehydrogenase flavoprotein subunit TERM 1195 1161394 - 1161383 - g 76 -4.4 -5.12707 | TTAAAGGTGAAAAAA CAAC ACCT GTTG TCTGGGATATGAACT sdhB1 1161172 - 1161987 + | succinate dehydrogenase iron-sulfur subunit murI 1162223 - 1163023 + | glutamate racemase TERM 1196 1163478 - 1163496 + G 74 -6 -4.52589 | overlap 1163480 ATATGGCGAAAATGG TTTCGGAT ATG ATCCGATA TTTTATGTACCGAAA TERM 1197 1163480 - 1163494 + G 79 -8.6 -3.87627 | overlap 1163478 ATGGCGAAAATGGTT TCGGAT ATG ATCCGA TATTTTATGTACCGA USA300HOU_1087 1163035 - 1163622 + | hypothetical protein USA300HOU_1088 1163615 - 1164118 + | hypothetical protein TERM 1198 1164102 - 1164135 + F 90 -4.8 -5.75822 | gap 1 ATCACGAAACAATCA GTCATA-CTACTTTT TAAAT AGAAGTAGCTATGGC TTTTTTTAGTTTATA USA300HOU_1089 1164246 - 1164413 + | hypothetical protein USA300HOU_1090 1164607 - 1164936 + | hypothetical protein TERM 1199 1164946 - 1164965 + F 78 -6.4 -4.84527 | AAATAATTGATAGAA GCCATGCT ATAG AGTGTGGC TTTTTGCTATATCCA USA300HOU_1091 1165098 - 1165214 + | hypothetical protein TERM 1200 1165281 - 1165240 - T 100 -11.8 -5.80951 | gap 1, opp_overlap 1165251 ACTTAAAATAAAAAA GCACGCCAATACGTTAGCA TTGTT TTCTAACGT-TTGGCGTAC AACTATTTAATTCAG USA300HOU_1092 1165706 - 1165305 - | formyl peptide receptor-like 1 inhibitory protein TERM 1201 1165563 - 1165581 + g 71 -3.2 -5.1361 | ACGTTCATCGTCCTT TTTAGC TTGATCT GCTAAA TTTTTTGCGATTTCT TERM 1202 1166304 - 1166327 + H 80 -6.8 -4.77438 | overlap 1166307 GGCATTGAGTATTAT TGGCAATCAC TTAA GTGATTGTTA TTTTTCGTGGTCAAT TERM 1203 1166307 - 1166324 + H 85 -8.5 -4.49314 | overlap 1166304 ATTGAGTATTATTGG CAATCAC TTAA GTGATTG TTATTTTTCGTGGTC TERM 1204 1166772 - 1166748 - g 79 -3.7 -5.40004 | opp_overlap 1166771, overlap 1166750 CAGTAAATGAAAAAA TGGACATTAAT GAT ATTAATATCGA CAATTTCCAATCTGT USA300HOU_1093 1166378 - 1166884 + | hypothetical protein TERM 1205 1166907 - 1166929 + F 85 -4.9 -5.60689 | GAGATTATACCTTCA GACACCA ACATTCAAA TGGTGTC TTTTTTGTTGTGTGG USA300HOU_1094 1167143 - 1167640 + | fibrinogen-binding protein USA300HOU_1095 1167794 - 1168144 + | fibrinogen-binding protein TERM 1206 1168188 - 1168149 - T 82 -8 -4.48664 | opp_overlap 1168154, overlap 1168154 TAAATAGATAATAAA TAAAACAGGTTGAGACAA AAAA TGGTCTTAACCTGTTTTC AATTTGCATATGTGA TERM 1207 1168154 - 1168183 + T 100 -10.1 -4.36595 | opp_overlap 1168149 1168154 AGATAATAAATAAAA CAGGTTGAGACAA AAAA TGGTCTTAACCTG TTTTCAATTTGCATA TERM 1208 1168183 - 1168154 - T 90 -7.9 -5.16038 | opp_overlap 1168154, overlap 1168149 AGATAATAAATAAAA CAGGTTGAGACAA AAAA TGGTCTTAACCTG TTTTCAATTTGCATA TERM 1209 1168611 - 1168592 - T 76 -9.4 -3.09273 | opp_overlap 1168596, overlap 1168596 GGGCCCCAACATAGA GAAATTGG AACC CCAATTTC TACAGACAATGCAAG TERM 1210 1168736 - 1168780 + T 100 -12.6 -4.14392 | gap 1, opp_overlap 1168720 1168736 1168743 1168746, overlap 1168743 ATTAGCTACAGCTAA TGATAAAGAACCACTACATAA TAAA TCAT-TAGTGGTTCTTTATCA TTTCTATCTCACTCT TERM 1211 1168780 - 1168736 - T 100 -14.8 -3.13728 | gap 1, opp_overlap 1168736 1168743, overlap 1168720 1168743 1168746 ATTAGCTACAGCTAA TGATAAAGAACCACTACATAA TAAA TCAT-TAGTGGTTCTTTATCA TTTCTATCTCACTCT TERM 1212 1168773 - 1168743 - T 75 -7.1 -4.07306 | gap 1, opp_overlap 1168736 1168743, overlap 1168736 1168746 ACAGCTAATGATAAA GAACCACTACATAA TAAA TCAT-TAGTGGTTC TTTATCATTTCTATC USA300HOU_1097 1168982 - 1168797 - | hypothetical protein USA300HOU_1098 1169837 - 1169604 - | hypothetical protein TERM 1213 1170051 - 1170070 + r 83 -8 -4.52857 | opp_overlap 1170039 1170040 1170051, overlap 1170041 1170040 TAATGTGTTCAAAAA GTTTTGAA CAAT TTCAAAAC TTTTATATAAAGGGT TERM 1214 1170070 - 1170051 - R 83 -8 -4.58283 | opp_overlap 1170041 1170040 1170051, overlap 1170039 1170040 TAATGTGTTCAAAAA GTTTTGAA CAAT TTCAAAAC TTTTATATAAAGGGT TERM 1215 1170270 - 1170234 - R 77 -6 -4.92783 | gap 1, opp_overlap 1170233 AATTCAGTATAAAAA TTAGCCGAAAAACATCA TTTC TGAAGT-TATCGGCTAA AGTTATAAATTATAT hly 1171273 - 1170314 - | alpha-hemolysin USA300HOU_1100 1171946 - 1172092 + | hypothetical protein USA300HOU_1101 1172076 - 1172273 + | hypothetical protein TERM 1216 1172363 - 1172325 - T 100 -14.9 -3.51202 | opp_overlap 1172323 1172322 1172361, overlap 1172321 CATTAAATGAAGGAA TAGAGCCTAAGACAT AATAAATCA ATGTCTTAGGCTCTA CAATATTATATTGGT TERM 1217 1172498 - 1172481 - T 93 -11.3 -3.27907 | overlap 1172476 CTACAGACAATGCAA GTTGGGG TGGG CCCCAAC ACAGAAGCTGACGAA TERM 1218 1172521 - 1172505 - T 72 -8 -3.68024 | GGCCCCAACACAGAA GCTGAC GAAAA GTCAGC TTACAATAATGTGCA USA300HOU_1103 1173434 - 1172718 - | superantigen-like protein USA300HOU_1104 1174267 - 1173542 - | superantigen-like protein TERM 1219 1173693 - 1173703 + g 76 -2.6 -5.48054 | opp_overlap 1173693 CCTTTATTATAAGAA TTAT TAT ATAA TTTTTTACTTTTAAT USA300HOU_1105 1175087 - 1174362 - | superantigen-like protein arcB2 1175525 - 1176526 + | ornithine carbamoyltransferase arcC2 1176549 - 1177481 + | carbamate kinase TERM 1220 1177539 - 1177583 + F 71 -6 -4.4388 | gap 2 ATTTTTATTATTTAT GTGCACCCC-C-TGAAAATA ATGCCTC TATTTTGATGCGGGGTGCAC TTTCTTAATTTATAT arcD2 1177653 - 1179209 + | arginine/ornithine APC transporter USA300HOU_1109 1179517 - 1179744 + | hypothetical protein TERM 1221 1179976 - 1180016 + T 100 -12.2 -3.14294 | gap 1, opp_overlap 1179978 1179987, overlap 1179987 AAAGAGGCATTGATA TACACTAAAAAGAGGCAAG ATTA CCTGCCTCTTTTTAGT-TA TTAAATATACGTGTT TERM 1222 1180015 - 1179978 - T 100 -15.1 -2.92091 | opp_overlap 1179976 1179987, overlap 1179987 AGAGGCATTGATATA CACTAAAAAGAGGCAAG ATTA CCTGCCTCTTTTTAGTT ATTAAATATACGTGT TERM 1223 1180006 - 1179987 - T 100 -10 -4.86133 | opp_overlap 1179976 1179987, overlap 1179978 GATATACACTAAAAA GAGGCAAG ATTA CCTGCCTC TTTTTAGTTATTAAA TERM 1224 1179987 - 1180006 + T 88 -7.8 -4.99435 | opp_overlap 1179987 1179978, overlap 1179976 GATATACACTAAAAA GAGGCAAG ATTA CCTGCCTC TTTTTAGTTATTAAA USA300HOU_1110 1180996 - 1180049 - | TDT family tellurite/dicarboxylate transporter TERM 1225 1180791 - 1180781 - G 70 -4 -4.84527 | GCCAGACATGAAAAA TGTT GTG AACA CTGATGAAACTAGAG USA300HOU_1111 1181245 - 1181433 + | hypothetical protein TERM 1226 1181464 - 1181489 + F 100 -8.3 -5.83822 | opp_overlap 1181467, overlap 1181467 AGTTAAATAATTAAA AAACCACGTCT CGAT GGACGTGGTTA TTTTTTTTAGATGTA TERM 1227 1181486 - 1181467 - f 100 -9.3 -5.4148 | opp_overlap 1181464 1181467 TAAATAATTAAAAAA CCACGTC TCGATG GACGTGG TTATTTTTTTTAGAT TERM 1228 1181467 - 1181486 + F 100 -10 -4.97383 | opp_overlap 1181467, overlap 1181464 TAAATAATTAAAAAA CCACGTCT CGAT GGACGTGG TTATTTTTTTTAGAT TERM 1229 1181872 - 1181851 - f 100 -8.7 -5.49568 | opp_overlap 1181846 1181851 AATTCAAAACAAAAA GAGCCCCGT AATC ACGGAACTC TTTTGTTTGGTAATG TERM 1230 1181851 - 1181872 + F 70 -4.3 -4.95484 | opp_overlap 1181851, overlap 1181846 AATTCAAAACAAAAA GAGCCCCGT AATC ACGGAACTC TTTTGTTTGGTAATG USA300HOU_1112 1182345 - 1182479 + | anti protein USA300HOU_1113 1182536 - 1182670 + | anti protein USA300HOU_1114 1182794 - 1183489 + | hydrolase TERM 1231 1183584 - 1183547 - T 72 -4.3 -5.10029 | gap 1, overlap 1183563 AGTAATTGTAAAAAA GACACTACGAA-AAGA TGCATTT TCATGCTCGTAGTGTC GAATATTATTATCTT USA300HOU_1115 1184038 - 1183598 - | hypothetical protein USA300HOU_1116 1184176 - 1184072 - | hypothetical protein TERM 1232 1185001 - 1184986 - g 71 -3.3 -5.04987 | AAGATTTTGAAAAAA CATCA GTTGCT TGATG ATGCTTTTAGAGCAA USA300HOU_1117 1184233 - 1185846 + | hypothetical protein TERM 1233 1185861 - 1185891 + F 100 -12.7 -6.28401 | overlap 1185862 ATATACCAAGGGTTT AGCCCGATTTATC TTAAT GATAAATCGGGCA TTTTTTTGTTTTTTA TERM 1234 1185862 - 1185890 + F 100 -16.2 -4.3155 | overlap 1185861 TATACCAAGGGTTTA GCCCGATTTATC TTAAT GATAAATCGGGC ATTTTTTTGTTTTTT USA300HOU_1118 1185990 - 1186421 + | cell division protein MraZ mraW 1186437 - 1187372 + | S-adenosyl-methyltransferase ftsL 1187386 - 1187787 + | cell division protein TERM 1235 1187818 - 1187805 - g 78 -2.4 -5.66926 | opp_overlap 1187805 1187808 TTAAAAAAAATAAAA TAGG GGCAGT CCTA CTTGTTGGTTTATTC TERM 1236 1187808 - 1187842 + G 74 -2.1 -5.50925 | opp_overlap 1187805, overlap 1187805 AAAAAAATAAAATAG GGGCAGTCCTACT TGTTGGTTT ATTCGGACTGCTC TTTTTTATATTGGTT TERM 1237 1189551 - 1189541 - g 71 -5.4 -4.56914 | GTAGGTAAATCAAAA GATG ACA CATC TAATGCAGAGTATAG pbpA 1187768 - 1190002 + | penicillin-binding protein 1 mraY 1190294 - 1191259 + | phospho-N-acetylmuramoyl-pentapeptide-transferase murD 1191261 - 1192610 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 1238 1192774 - 1192764 - g 74 -5.4 -4.78077 | TCTAATCAAAATAAA GATG ATA CATC TCAACAAGCTGATTT TERM 1239 1193459 - 1193438 - g 75 -8.9 -3.40597 | opp_overlap 1193442 1193450, overlap 1193436 1193442 1193450 TGCTTTAGTGAAATA TAAAGGTAA ATAT TTACCTTTA TTAGAAAATGGTAAA ftsQ 1192626 - 1193945 + | cell division protein FtsQ TERM 1240 1195827 - 1195841 + F 76 -10 -2.79023 | overlap 1195824 GTGGCGGAACTGGTA CTGGTG CAG CACCAG TCGTTGCTAAAATTG TERM 1241 1196264 - 1196276 + F 71 -7.7 -3.43217 | ACATCTATCGTTGGT GCACA AGG TGTGC TTATGAATATTACTG TERM 1242 1196727 - 1196705 - f 100 -12.2 -4.24397 | opp_overlap 1196705 ATAATTCAACACAAA TCATCAGATA ACA TATCTGATGA TTTTTTTACTAATTT TERM 1243 1196705 - 1196727 + F 100 -12.2 -5.5943 | opp_overlap 1196705 ATAATTCAACACAAA TCATCAGATA ACA TATCTGATGA TTTTTTTACTAATTT USA300HOU_1125 1197737 - 1198411 + | hypothetical protein USA300HOU_1126 1198408 - 1198971 + | hypothetical protein USA300HOU_1127 1198983 - 1199273 + | hypothetical protein TERM 1244 1199288 - 1199318 + F 87 -8.3 -4.82154 | opp_overlap 1199288 AATTAAGCGACATAA CGAGGCAAGGGTA CATGA TACTTTAGCCTCG TTTTTGATATGCATT USA300HOU_1128 1199356 - 1200162 + | hypothetical protein USA300HOU_1129 1200186 - 1200803 + | hypothetical protein ileS 1201024 - 1203777 + | isoleucyl-tRNA synthetase TERM 1245 1203905 - 1203888 - f 88 -4.1 -5.7946 | opp_overlap 1203888 TTGTGAATAAAAAAA TGACCAA GTTA CCGGTCA TATATGTAAAAAATG USA300HOU_1131 1204067 - 1204864 + | lactoylglutathione lyase TERM 1246 1204969 - 1205002 + F 100 -14.9 -5.25893 | opp_overlap 1204969 TAGGCAATGTAAAAA GCTGATTTCTATTAA TTAT TTGATAGAAATCAGC TTTTTTGATATGTAT TERM 1247 1205002 - 1204969 - f 100 -12.7 -4.75174 | opp_overlap 1204969 TAGGCAATGTAAAAA GCTGATTTCTATTAA TTAT TTGATAGAAATCAGC TTTTTTGATATGTAT TERM 1248 1205027 - 1205046 + F 73 -5.8 -4.56314 | gap 1, opp_overlap 1205029, overlap 1205028 1205029 1205031 ATGTATTTTATAATG TA-CAGCTC GTT GAGCTGCTA TTTTCCTTATATTAA TERM 1249 1205043 - 1205029 - f 76 -10 -2.60079 | opp_overlap 1205028 1205027 1205029 1205031 GTATTTTATAATGTA CAGCTC GTT GAGCTG CTATTTTCCTTATAT TERM 1250 1205029 - 1205043 + F 77 -10 -2.91057 | opp_overlap 1205029, overlap 1205028 1205027 1205031 GTATTTTATAATGTA CAGCTC GTT GAGCTG CTATTTTCCTTATAT TERM 1251 1205421 - 1205466 + F 81 -7.1 -4.6526 | opp_overlap 1205423, overlap 1205423 ATTGTATAAATAGAG AACAGCAGTAAGATAATTTTT AATT AGAAAATATCTTACTACTGTC TTTTTAGGGATTTAT TERM 1252 1205464 - 1205423 - f 86 -9.7 -3.80279 | opp_overlap 1205421 1205423 TGTATAAATAGAGAA CAGCAGTAAGATAATTTTT AATT AGAAAATATCTTACTACTG TCTTTTTAGGGATTT TERM 1253 1205423 - 1205464 + F 90 -9.7 -3.9318 | opp_overlap 1205423, overlap 1205421 TGTATAAATAGAGAA CAGCAGTAAGATAATTTTT AATT AGAAAATATCTTACTACTG TCTTTTTAGGGATTT TERM 1254 1205872 - 1205888 + G 76 -6.7 -4.4634 | GGGGAATATTGAGTG GAAAAAT GAC ATTTTTC TTTATTATTACCATT lspA 1205688 - 1206179 + | A8 signal peptidase II family protein rluD 1206179 - 1207096 + | pseudouridylate synthase RluD TERM 1255 1207461 - 1207435 - f 79 -8.1 -3.88766 | opp_overlap 1207435 ATTGTATATACTAAA CCTCATGTC GATATTAAA GACATGAGG TTTTTTGTTTCTAAA TERM 1256 1207435 - 1207461 + F 100 -8.1 -5.72622 | opp_overlap 1207435 ATTGTATATACTAAA CCTCATGTC GATATTAAA GACATGAGG TTTTTTGTTTCTAAA pyrR 1207495 - 1208022 + | pyrimidine regulatory protein PyrR TERM 1257 1208183 - 1208210 + F 100 -10.1 -5.88565 | TTGTCACACTTTTTG TCTCTTTACAT ATACTG ATGTAAAGAGA TTTTTTTATTATCGG pyrP 1208231 - 1209547 + | uracil permease pyrB 1209575 - 1210456 + | aspartate carbamoyltransferase catalytic subunit pyrC 1210471 - 1211748 + | dihydroorotase carA 1211750 - 1212850 + | carbamoyl phosphate synthase small subunit TERM 1258 1213798 - 1213779 - g 85 -8.6 -4.11216 | GCGTTAGCTTCAAAA GCAACAGG ATAT CCTATTGC AAAATTAGCTGCTAA carB 1212843 - 1216016 + | carbamoyl phosphate synthase large subunit pyrF 1216123 - 1216818 + | orotidine-5'-phosphate decarboxylase pyrE 1216818 - 1217429 + | orotate phosphoribosyltransferase USA300HOU_1144 1217459 - 1217671 + | hypothetical protein TERM 1259 1217937 - 1217947 + F 70 -4 -4.88228 | opp_overlap 1217937 TATCATTTATTAACA TATG TAT CATA TTTTTAATCTTGCGT USA300HOU_1145 1218108 - 1218509 + | hypothetical protein TERM 1260 1218708 - 1218755 + T 100 -15.3 -3.86822 | gap 1, opp_overlap 1218708 1218712, overlap 1218712 GCATTAAATAATAAA TAAACACCTCACCATAAGAAAG GACTA CTTTCTTTTG-TGAGGTGTTTA TTTGTCGACAACTTG TERM 1261 1218755 - 1218708 - T 100 -15.3 -4.60258 | gap 1, opp_overlap 1218708 1218712, overlap 1218712 GCATTAAATAATAAA TAAACACCTCACCATAAGAAAG GACTA CTTTCTTTTG-TGAGGTGTTTA TTTGTCGACAACTTG TERM 1262 1218712 - 1218751 + T 100 -11.7 -4.55295 | gap 1, opp_overlap 1218708 1218712, overlap 1218708 TAAATAATAAATAAA CACCTCACCATAAGAAAG GACTA CTTTCTTTTG-TGAGGTG TTTATTTGTCGACAA TERM 1263 1218751 - 1218712 - T 100 -11.7 -4.82212 | gap 1, opp_overlap 1218712 1218708, overlap 1218708 TAAATAATAAATAAA CACCTCACCATAAGAAAG GACTA CTTTCTTTTG-TGAGGTG TTTATTTGTCGACAA fbpA 1220469 - 1218772 - | fibrinogen-binding protein gmk 1220744 - 1221367 + | guanylate kinase rpoZ 1221367 - 1221585 + | DNA-directed RNA polymerase subunit omega TERM 1264 1221652 - 1221669 + F 100 -7.7 -5.75822 | opp_overlap 1221652 CATATCCAAATCAAA CGCACCT ATGT AGGTGTG TTTTTTTAGTTTATC USA300HOU_1149 1221795 - 1223000 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase priA 1223000 - 1225408 + | primosomal protein N prime TERM 1265 1225491 - 1225540 + F 100 -9 -5.01546 | gap 1, opp_overlap 1225490 1225491 TAAGTACAGAAAAAG GGCAGAATATACAACTGTTAACT ATTTA AATTAGCAGTT-TATATTCTGTC TTTTTATATGGCTTT USA300HOU_1151 1225914 - 1226867 + | lipoprotein def2 1227532 - 1228020 + | formylmethionine deformylase fmt2 1228013 - 1228948 + | methionyl-tRNA formyltransferase USA300HOU_1154 1228945 - 1230252 + | rRNA (cytosine-5-)-methyltransferase TERM 1266 1230294 - 1230278 - g 84 -5.2 -5.45802 | TGCTGAAAAGAAAAA GAAGAA TAAAT TTCTTC CAAATTTTGACAAGC TERM 1267 1230386 - 1230375 - g 71 -3 -5.10208 | CAAGGGCAACAAAAA TTTC GAGC GAAA CAGATTTTTGAATGG USA300HOU_1155 1230255 - 1231349 + | hypothetical protein USA300HOU_1156 1231356 - 1232099 + | PP2C protein phosphatase TERM 1268 1232265 - 1232255 - g 71 -5.4 -4.55446 | GAAGAAACATTAAAA CGTT TTG AACG AGAAGTACATAACTC USA300HOU_1157 1232096 - 1234090 + | non-specific serine/threonine protein kinase TERM 1269 1234109 - 1234138 + F 100 -10.1 -5.09762 | opp_overlap 1234111 TAATTGAAGTAAATG TACCGAGGTTTCT ATTT GGAAGTCTCGGTA TTTTTATGTTGAGAT engC 1234318 - 1235193 + | hypothetical protein cfxE 1235194 - 1235838 + | ribulose-phosphate 3-epimerase TERM 1270 1236295 - 1236283 - g 72 -4.9 -4.65838 | CATACAGTTGAAAAA GATAA GAG TTATC CGTACATTTCATTTA yloS 1235845 - 1236486 + | hypothetical protein TERM 1271 1236578 - 1236617 + F 74 -8.1 -3.61398 | overlap 1236582 TAACATAATAATAGA TGAATCACGCTGTAATT AATGAA GATTATGGCGTGATTTA TTATTGAAAGGAAAA TERM 1272 1236582 - 1236613 + F 76 -6.7 -4.44667 | overlap 1236578 ATAATAATAGATGAA TCACGCTGTAATT AATGAA GATTATGGCGTGA TTTATTATTGAAAGG TERM 1273 1236787 - 1236812 + F 81 -10.6 -3.09491 | opp_overlap 1236787, overlap 1236790 TTGGTAACAAAAAAA GAACTAAGAG GTTGAG CTCTTAGTTC TTAAGTAAATGTGTC TERM 1274 1236812 - 1236787 - f 100 -10.6 -5.7946 | opp_overlap 1236787 1236790 TTGGTAACAAAAAAA GAACTAAGAG GTTGAG CTCTTAGTTC TTAAGTAAATGTGTC TERM 1275 1236822 - 1236844 + F 74 -3.4 -5.37043 | opp_overlap 1236822 TAGTTCTTAAGTAAA TGTGTCCT CCACATA AGGTCACA TTTTTTATGTGCAAT USA300HOU_1161 1237498 - 1237872 + | hypothetical protein USA300HOU_1162 1237887 - 1239533 + | hypothetical protein TERM 1276 1239538 - 1239591 + F 95 -11.6 -3.77413 | gap 1, opp_overlap 1239551, overlap 1239551 CAGTAGAATAAAAAT TTAAAATAAAAAACTACCAA-TGAT AAATC ATCAGTTGGTAGTTTTTTATTTTGC TATTTTAGTGATATT TERM 1277 1239578 - 1239551 - f 95 -7.2 -5.80951 | gap 1, opp_overlap 1239538 1239551 ATTTAAAATAAAAAA CTACCAA-TGATA AAT CATCAGTTGGTAG TTTTTTATTTTGCTA TERM 1278 1239551 - 1239578 + F 95 -6.5 -5.83211 | gap 1, opp_overlap 1239551, overlap 1239538 ATTTAAAATAAAAAA CTACCAA-TGAT AAATC ATCAGTTGGTAG TTTTTTATTTTGCTA TERM 1279 1240655 - 1240673 + G 70 -8.2 -3.21218 | opp_overlap 1240654 1240655 GTATGCGTTAAAAAC TGCTGGTT ATC AATCAGCA TTGATGGTACCAACT recG 1239723 - 1241783 + | DNA helicase RecG USA300HOU_1164 1241986 - 1242558 + | fatty acid biosynthesis transcriptional regulator USA300HOU_1165 1242563 - 1243549 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 1280 1244422 - 1244406 - g 73 -8.1 -3.65523 | opp_overlap 1244408 AAAAAAATAAATAGA GATGTTA AGT TAACATC AATTCAAACTTTAGA fabD 1243542 - 1244468 + | malonyl CoA-acyl carrier protein transacylase fabG 1244455 - 1245195 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 1281 1245227 - 1245268 + G 73 -8.2 -3.53343 | gap 1 CTCATTGACGCAGTG GTTGACT-GGTCATCCAAT GGAGA ATTGTCTGACCTAGTCAAC TTTGCGGGGGAAATT USA300HOU_1168 1245176 - 1245331 + | hypothetical protein TERM 1282 1245326 - 1245349 + F 71 -6.8 -3.96291 | opp_overlap 1245326, overlap 1245317 TTTCTCCCTAAGAAA CACTAATCAA TAAA TTGATAAGTG TTTCTAAAATTTCTA TERM 1283 1245349 - 1245326 - f 72 -6.8 -4.15044 | opp_overlap 1245326 1245317 TTTCTCCCTAAGAAA CACTAATCAA TAAA TTGATAAGTG TTTCTAAAATTTCTA hmrB 1245438 - 1245671 + | acyl carrier protein TERM 1284 1245684 - 1245709 + F 100 -9.7 -6.01187 | TAATAAATCTTACAT CTGGGTCGTCA GTAT TGTCGACTCAG TTTTTTTCTTTAATT rnc 1245787 - 1246518 + | ribonuclease III smc 1246665 - 1250231 + | SMC superfamily ATP-binding chromosome segregation protein ftsY 1250231 - 1251481 + | type I general secretory pathway protein signal recognition particle protein FtsY TERM 1285 1253231 - 1253279 + T 100 -9.2 -4.65895 | gap 1, opp_overlap 1253231 1253245, overlap 1253233 TTTGTTGCAATGAGA TGTGCATCCCG-AAAGTTATACT AAAG AATATAACTTTATGGGGTGCATA TTTTTAGATACACAA TERM 1286 1253233 - 1253277 + T 90 -9.6 -3.94812 | gap 1, opp_overlap 1253231 1253245, overlap 1253231 TGTTGCAATGAGATG TGCATCCCG-AAAGTTATACT AAAG AATATAACTTTATGGGGTGCA TATTTTTAGATACAC TERM 1287 1253909 - 1253895 - T 70 -4.3 -4.90302 | opp_overlap 1253904, overlap 1253904 GACGAACAAAAGAAA GCTAA GTAAT TTAGC GTAAAATTGTTCTAA TERM 1288 1254008 - 1254026 + T 100 -11 -5.33026 | AATATAGAACGTATT GGGTACCA TAA TGGTGCCC TTTTTCTTTGAATTA TERM 1289 1255836 - 1255872 + T 100 -11.7 -5.66989 | opp_overlap 1255836 GACTCAAACAATAAA GCCATCTAGGTCACTTT TAT GGAGTGATATAGATGGC TTTTTTTGCTGTTTA TERM 1290 1255872 - 1255836 - T 85 -8.1 -4.58585 | opp_overlap 1255836 GACTCAAACAATAAA GCCATCTAGGTCACT TTTATGG AGTGATATAGATGGC TTTTTTTGCTGTTTA TERM 1291 1256002 - 1255970 - T 90 -7.2 -5.42975 | gap 1, opp_overlap 1255970 TTATATAAACAAAAA TCTACTAAGTGCCAT TGAA AAGG-ACTTAGTAGA TTTATTAAATATATG TERM 1292 1255970 - 1256002 + T 77 -7.2 -4.24285 | gap 1, opp_overlap 1255970 TTATATAAACAAAAA TCTACTAAGTGCCAT TGAA AAGG-ACTTAGTAGA TTTATTAAATATATG USA300HOU_1173 1258634 - 1256028 - | hypothetical protein USA300HOU_1174 1259035 - 1259919 + | ribosomal biogenesis GTPase rnhB 1259903 - 1260670 + | ribonuclease H sucC 1260779 - 1261945 + | succinyl-CoA synthetase subunit beta sucD 1261967 - 1262875 + | succinyl-CoA synthetase subunit alpha TERM 1293 1262901 - 1262941 + F 100 -13 -3.9712 | gap 2, opp_overlap 1262896 1262895 TGATATAAATGGCTA TAGCCCA-TTCC-ATACTTT ATA AAAGTATCGGAAATGGGCTA TTTGTCGTGCGATGA TERM 1294 1263735 - 1263723 - g 74 -5.5 -4.77757 | GGTCAAAAATTAAAA GTGCC AAT GACAC CATTAGTAGAACCAA lytN 1263069 - 1264220 + | C51 family D-Ala-D-Gly carboxypeptidase TERM 1295 1264630 - 1264616 - g 72 -5.8 -4.35483 | TGGTAGGATAATAAA GAATTA TAA TAATTC AGTGATAGTAAAGAT fmhC 1264248 - 1265492 + | FemAB family peptidoglycan biosynthesis protein USA300HOU_1180 1265665 - 1266537 + | SMF family nucleotide-binding protein TERM 1296 1266955 - 1266936 - g 93 -7.2 -5.54264 | AAACATGCAAAAAAA GCGAAAAA CGTC TTTCTCGC AAGTGACCCCGACCG topA 1266711 - 1268786 + | DNA topoisomerase I gid 1268942 - 1270249 + | tRNA (uracil-5-)-methyltransferase Gid TERM 1297 1271257 - 1271270 + G 77 -5.3 -4.95547 | TTCAAACCAATTCAG TCATG CAAT CATGA TTTTCTTATTGTAAA xerC 1270666 - 1271562 + | tyrosine recombinase XerC clpQ 1271559 - 1272104 + | ATP-dependent protease peptidase subunit TERM 1298 1273320 - 1273306 - g 77 -8.6 -3.63901 | overlap 1273304 ATTAATTAAACAATA TGAAGC ATT GCTTCA AACAGAAGAAGTTAC clpY 1272170 - 1273573 + | ATP-dependent protease ATP-binding subunit USA300HOU_1186 1273598 - 1274371 + | transcriptional repressor CodY TERM 1299 1274437 - 1274470 + F 83 -6.9 -5.01422 | overlap 1274431 TTGGCGGTAGTCAAT GAAATGACTTTGATG ATTA TGTTGAAGTCATTTC TTTATTTTTGTCTAA rpsB 1274713 - 1275480 + | 30S ribosomal protein S2 TERM 1300 1275517 - 1275543 + G 88 -7.5 -5.00616 | gap 1, opp_overlap 1275516 GATATAGTTTAAATG GGTGATAAG-AT ATTA ATGCTTATCACC TTTTTTAAAAAGAAA USA300HOU_1189 1275514 - 1275627 + | hypothetical protein TERM 1301 1276516 - 1276499 - g 74 -5.5 -4.68424 | GAAGGTATGGAAAAA CGCGAAG AAAA CTTTGCG GATGAAGTTAAAGGA tsf 1275662 - 1276543 + | elongation factor Ts TERM 1302 1276765 - 1276749 - g 77 -5.2 -4.84359 | TTAGCTGGAGAAAAA GGATTT GGCAT AAATCC AGTAATTATTAAAAG USA300HOU_1191 1276680 - 1277402 + | uridylate kinase TERM 1303 1278215 - 1278240 + F 100 -7.7 -6.01187 | gap 1, opp_overlap 1278215 CATTTCTGGTGTAAA CTGTACC-GAGT CAG ACTTTGGTACAG TTTTTTTATTTGCTT TERM 1304 1278396 - 1278377 - g 70 -4.4 -4.78345 | AATAAATAAAAAGAA CACTATAA ATAA TTATAATG AAGAATTAGACTCGT uppS 1278348 - 1279118 + | di-trans, poly-cis-decaprenylcistransferase cdsA 1279125 - 1279907 + | phosphatidate cytidylyltransferase TERM 1305 1279937 - 1279973 + F 70 -6.1 -4.1585 | gap 1, opp_overlap 1279935 1279937 CAATAAACGTAAAGA GGAGTTGCTGAGAT AATTTAATGA ATCTCAG-AACTCC TTTTGAAAATTATAC USA300HOU_1194 1280169 - 1281455 + | M50 family peptidase proS 1281475 - 1283178 + | prolyl-tRNA synthetase TERM 1306 1286068 - 1286058 - g 73 -4 -5.08824 | CGTTTAGTTAAAAAA TCAT TAG ATGA TGGATACTTAGTTGG dnaE1 1283442 - 1287752 + | DNA polymerase III PolC TERM 1307 1288012 - 1287994 - f 74 -8.8 -3.3785 | opp_overlap 1287994 TGAACTCAGGCAGAA GAGTGGGA GAT TCCCGCTC TTTTCTATTTGCCAA TERM 1308 1287994 - 1288012 + F 100 -11 -4.78848 | opp_overlap 1287994 TGAACTCAGGCAGAA GAGTGGGA GAT TCCCGCTC TTTTCTATTTGCCAA USA300HOU_1197 1288042 - 1288509 + | hypothetical protein nusA 1288530 - 1289705 + | transcription elongation factor NusA TERM 1309 1289754 - 1289742 - g 95 -4.1 -6.20267 | TGAAAAAGAAAAAAA TTCCG ATG CGAAA ATGTATTCTTTCAAA USA300HOU_1199 1289726 - 1290010 + | hypothetical protein rplL2 1290007 - 1290324 + | ribosomal protein L7/L12 infB 1290329 - 1292446 + | translation initiation factor IF-2 TERM 1310 1292485 - 1292537 + F 95 -11.8 -3.80862 | TATAGTTAAGATTGA TATGCTCCCTATAAA-TATTGCACTT TTT AAGTGTC-TACTTTATAGGGAGCATA TTTGATACTAGCTTT rbfA 1292832 - 1293182 + | ribosome-binding factor A truB 1293351 - 1294268 + | pseudouridylate synthase ribC 1294283 - 1295254 + | bifunctional riboflavin kinase/FAD synthase RibC rpsO 1295369 - 1295638 + | 30S ribosomal protein S15 TERM 1311 1295655 - 1295688 + F 100 -11.9 -4.1891 | CTTAATATAACGTCT TTGAGGTTGGGGCAT ATTT ATGTTCCAACCTTAA TTTATATTAAAAAAG TERM 1312 1296036 - 1296026 - g 70 -4 -4.87892 | TCTCAAGAAAAGAAA GTTT TTA AAAC TGAATGGGCAGGAAG pnp 1296008 - 1298104 + | polynucleotide phosphorylase/polyadenylase TERM 1313 1298114 - 1298142 + F 100 -9.7 -5.61596 | opp_overlap 1298114 1298113 GAATAATATTTAAAG TCATATGACGACA ATG TATCGTCATGTGA TTTTTTTATGCCACT TERM 1314 1298142 - 1298114 - f 76 -9.7 -2.88032 | opp_overlap 1298114, overlap 1298113 GAATAATATTTAAAG TCATATGACGACA ATG TATCGTCATGTGA TTTTTTTATGCCACT TERM 1315 1298373 - 1298360 - g 79 -3.9 -5.47159 | TTTAATAAAGAAAAA GAATA AAGA TATTC GCATTATACCATTAG USA300HOU_1207 1298340 - 1300013 + | beta-lactamase TERM 1316 1300067 - 1300079 + F 70 -6.3 -4.13911 | ACTGAAATATAATGG TTGTC ATG GACAA TTTACTTATATTTTA USA300HOU_1208 1300260 - 1302638 + | FtsK/SpoIIIE family DNA translocase TERM 1317 1302733 - 1302709 - g 74 -5.7 -4.78981 | opp_overlap 1302708 ATTAAGCAAAATAAA TTGGAATATGG TGA CCAACTTCCAA GTAATTTATCAATTG USA300HOU_1209 1302643 - 1303356 + | GntR family transcriptional regulator USA300HOU_1210 1303387 - 1304652 + | hypothetical protein TERM 1318 1305145 - 1305115 - g 80 -9.3 -3.65294 | gap 1 CTGGATATAAATTAA TGTTTGATACATTG CGTG CAATGTATC-AACA ACATCCAATACGTGT TERM 1319 1305240 - 1305252 + G 71 -3.4 -5.18297 | overlap 1305244 GAAACGTTTTATCAT CCAT CAAAT ATGG TTTTATTTGTTGTTG USA300HOU_1211 1304652 - 1305938 + | M16C subfamily peptidase USA300HOU_1212 1305938 - 1306642 + | short chain dehydrogenase USA300HOU_1213 1306747 - 1307574 + | hypothetical protein USA300HOU_1214 1307593 - 1307985 + | transcriptional regulator TERM 1320 1308495 - 1308511 + G 74 -5.2 -4.80959 | GGCAACATTGATTGG TTTGTC ATTAG GACAAA TTTTATTATACATTG pgsA 1308019 - 1308597 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 1321 1308611 - 1308638 + F 95 -7.9 -5.52384 | AAATATTTGTTTATA CTAGATTTCAT TTTCAT ATGGAATCTAG TTTTTTTAATCCCAA TERM 1322 1308690 - 1308704 + F 73 -5.8 -4.56335 | opp_overlap 1308690 1308692 TTGTTTATAATGATA TATTGT AAA ACAATA TTTGTTCATTTTTTT cinA 1308824 - 1309975 + | competence-damage inducible protein CinA recA 1310140 - 1311183 + | recombinase A USA300HOU_1218 1311537 - 1313096 + | phosphodiesterase TERM 1323 1313103 - 1313128 + T 100 -9 -5.1925 | overlap 1313104 GCGAAATAATTTTTG TCTCCCTCAC AAATTA GTGAGGGAGC TTTTTTAAGTTGTAG TERM 1324 1313104 - 1313127 + T 100 -12.5 -3.70465 | overlap 1313103 CGAAATAATTTTTGT CTCCCTCAC AAATTA GTGAGGGAG CTTTTTTAAGTTGTA TERM 1325 1313358 - 1313330 - T 100 -17.7 -5.4833 | opp_overlap 1313323 1313333 1313338, overlap 1313307 CTATCCAATAAAAAA GAAGAGAAGATGT AAC ACATCTTCTCTTC TGCAATATTAATTAG TERM 1326 1313333 - 1313355 + T 100 -13.6 -3.37028 | opp_overlap 1313330, overlap 1313323 1313338 TCCAATAAAAAAGAA GAGAAGATGT AAC ACATCTTCTC TTCTGCAATATTAAT USA300HOU_1219 1313608 - 1313393 - | hypothetical protein TERM 1327 1314130 - 1314109 - g 70 -7.3 -3.89302 | ATTAATGATATTAAA CTTGCAGTT ATTA ATCTGCAAG GAAGAGCGTTTATGC USA300HOU_1220 1313782 - 1314579 + | hypothetical protein TERM 1328 1314639 - 1314670 + F 86 -7.4 -5.25772 | gap 1, opp_overlap 1314639 1314637 1314642, overlap 1314642 TATGAATTTAATATA GTACCACTG-TTTAC ATA GTAAATCGGTGGTTC TTTTTGTTATCATTT TERM 1329 1314642 - 1314667 + F 83 -7.7 -4.68512 | gap 1, opp_overlap 1314642 1314639 1314637, overlap 1314639 GAATTTAATATAGTA CCACTG-TTTAC ATA GTAAATCGGTGG TTCTTTTTGTTATCA porA 1314719 - 1316479 + | ferredoxin dehydrogenase alpha subunit porB 1316480 - 1317346 + | 2-oxoglutarate ferredoxin oxidoreductase subunit beta TERM 1330 1317356 - 1317402 + F 100 -9.7 -5.27779 | opp_overlap 1317351 1317356 ATTTAATAATTAAAA CTGAGTCGTATAAATGTATTT ATAAC AGATCCATTTATGCTACTCAG TTTTTTACTATTACA TERM 1331 1317402 - 1317356 - f 73 -6 -4.56736 | opp_overlap 1317356, overlap 1317351 ATTTAATAATTAAAA CTGAGTCGTATAAATGTATTTA TAA CAGATCCATTTATGCTACTCAG TTTTTTACTATTACA USA300HOU_1223 1317440 - 1317733 + | hypothetical protein miaB 1317867 - 1319411 + | 2-methylthioadenine synthetase USA300HOU_1225 1319412 - 1319777 + | hypothetical protein USA300HOU_1226 1319804 - 1320295 + | hypothetical protein TERM 1332 1320722 - 1320706 - g 70 -8 -3.16055 | GAAATGTTTTATGAA GATGCC AAGGA GGCATC ACGTGTACTTGAAAT mutS1 1320598 - 1323216 + | DNA mismatch repair protein TERM 1333 1324024 - 1324008 - g 70 -3.8 -4.85129 | ACGATACATTAAAAA CTTTAT GCTAA ATAAAG CGATTTTAGAAGGCT TERM 1334 1324561 - 1324547 - g 70 -7.2 -3.83771 | overlap 1324538 AAGAAATGGATCAAA CATTTG ATT CAAATG ATGGTACAACTGTGC mutL 1323229 - 1325238 + | DNA mismatch repair protein MutL glpP 1325244 - 1325786 + | glycerol uptake operon antiterminator regulatory protein TERM 1335 1325955 - 1325902 - f 81 -6.4 -5.03713 | gap 1, opp_overlap 1325909, overlap 1325909 AATAATCAAATAAAA TAATTAGCACCTCTAAAACGATTAA AATCA TTAAA-GTTTTAGAGGTGTTTATTA GTAAAAAATGCAACT TERM 1336 1325909 - 1325948 + F 84 -8.9 -4.24342 | gap 1, opp_overlap 1325902 1325909 AAATAAAATAATTAG CACCTCTAAAACGATTAA AATCA TTAAA-GTTTTAGAGGTG TTTATTAGTAAAAAA TERM 1337 1325948 - 1325909 - f 70 -8.9 -2.50563 | gap 1, opp_overlap 1325909, overlap 1325902 AAATAAAATAATTAG CACCTCTAAAACGATTAA AATCA TTAAA-GTTTTAGAGGTG TTTATTAGTAAAAAA glpF 1326251 - 1327069 + | MIP family major intrinsic protein channel protein TERM 1338 1328612 - 1328602 - g 82 -5.4 -5.25772 | AAATTAGAAGAAAAA TTCG ATC CGAA AATGGATGAAGGCGA glpK 1327198 - 1328694 + | glycerol kinase TERM 1339 1328764 - 1328822 + F 100 -9.9 -4.95854 | gap 1, opp_overlap 1328764 ATTTGAATCGAGAAG CGAGAGATTTGTTCGAACATGTACAATT GAAG GATTGTTTATGTG-GGACAAGTCTCTCG TTTTTACATTTTTTA TERM 1340 1329296 - 1329285 - g 71 -3 -5.0666 | overlap 1329286 TATCTAAAAAAGAAA CTTT AGCT AAAG AACCATTAGTTAAAA TERM 1341 1329797 - 1329813 + G 70 -8.1 -3.19522 | opp_overlap 1329796 1329793 GAAGACAGAGACTAT TTAATCG ATG CGATTAA TTACATGTTCCCTAG glpD 1328804 - 1330525 + | aerobic glycerol-3-phosphate dehydrogenase TERM 1342 1330546 - 1330571 + F 95 -7.6 -5.60993 | opp_overlap 1330546 TTGTACAATCATAAA CTGGTGTCCT GTTTTA AGGGCATCAG TTTTTTTATACGAGA TERM 1343 1331218 - 1331204 - g 91 -4.3 -5.7946 | GTTTTAATAAAAAAA TACGT CCATT ACGTA CACAAAGTGATTGGA USA300HOU_1233 1330675 - 1331589 + | lysophophospholipase USA300HOU_1234 1331607 - 1332542 + | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 1344 1332688 - 1332671 - g 77 -8.5 -3.67597 | opp_overlap 1332663 GGTGTTATTGAAGAA TACGACA AGTA TGTCGTA AGCTTAAATTCTCAA hfq 1332557 - 1332790 + | host factor-I protein Hfq TERM 1345 1332936 - 1332985 + T 100 -15.4 -4.97158 | gap 1, opp_overlap 1332936 TGTTTGTAATAAAAA CGCTTCATATAAAGGTCGAGTCA ATATA TGATACGAC-TTTATATGAAGCG TTTTATTTGCTATGA TERM 1346 1332985 - 1332936 - T 100 -13.2 -5.06414 | gap 1, opp_overlap 1332936 TGTTTGTAATAAAAA CGCTTCATATAAAGGTCGAGTCA ATATA TGATACGAC-TTTATATGAAGCG TTTTATTTGCTATGA bsaA 1333488 - 1333012 - | glutathione peroxidase USA300HOU_1237 1333600 - 1334838 + | GTP-binding protein USA300HOU_1238 1334857 - 1336095 + | hypothetical protein TERM 1347 1336105 - 1336138 + F 76 -5.4 -5.01732 | opp_overlap 1336105 ATATAATAGATTAAA TTTCACCCTAAATG ATAATG TGTTTTGGGTGAAA TTTTTTGCGGAGATT glnR 1336338 - 1336706 + | glutamine synthetase repressor glnA 1336725 - 1338065 + | glutamate--ammonia ligase TERM 1348 1338101 - 1338125 + F 100 -11.5 -5.37593 | opp_overlap 1338101 AATCAGTAATATCAA GGGCTAGAGCA TTT TGCTTTAGCTC TTTTTTGATTTGGAA TERM 1349 1338479 - 1338463 - f 75 -4.5 -5.15682 | opp_overlap 1338463 AAAAGAGAAACAAAA CAAAAAA TAT CTTTTTG TTTATCGATCGGTAT USA300HOU_1241 1338558 - 1338755 + | hypothetical protein TERM 1350 1339315 - 1339292 - f 100 -9.6 -4.56597 | TCGTTCTTTTAAAAA GGTAAAGGGC AAAA GACCTTTACC ACATTAAATAGGGAG USA300HOU_1242 1339456 - 1339668 + | hypothetical protein TERM 1351 1339781 - 1339771 - f 81 -2.6 -5.7827 | opp_overlap 1339771 AATATAAATAAAAAA TTAT CAA ATAA TATAATATAGAATAG USA300HOU_1243 1339962 - 1340168 + | hypothetical protein USA300HOU_1244 1340869 - 1340979 + | hypothetical protein TERM 1352 1341439 - 1341429 - g 86 -2.6 -5.94214 | AATACAAGAAAAAAA TAAT TGA ATTA ATTGAAAGTAATTTA USA300HOU_1245 1341407 - 1341592 + | hypothetical protein TERM 1353 1341825 - 1341873 + F 100 -10.4 -4.46267 | opp_overlap 1341825 TGGATCGTCTTGAAA TGCTCCCTTCAAAGTTTTCATT TTTTC AATGTCGACTTCGAAGGGGGCA TTTTCATTAAATTGT TERM 1354 1341873 - 1341825 - f 73 -8.2 -3.53811 | opp_overlap 1341825 TGGATCGTCTTGAAA TGCTCCCTTCAAAGTTTTCATT TTTTC AATGTCGACTTCGAAGGGGGCA TTTTCATTAAATTGT TERM 1355 1342055 - 1342032 - f 78 -10.4 -2.72344 | gap 1, opp_overlap 1342031 1342030 TTCGAGCGTTAATCA GTCAGGAGGGA CTT TCCCTCCT-AC AATTTAATAATAATA USA300HOU_1246 1342104 - 1342208 + | hypothetical protein USA300HOU_1247 1342163 - 1342336 + | hypothetical protein USA300HOU_1248 1342337 - 1342588 + | hypothetical protein USA300HOU_1249 1342634 - 1343218 + | hypothetical protein USA300HOU_1250 1343339 - 1343587 + | hypothetical protein TERM 1356 1343610 - 1343631 + F 100 -10.3 -5.4505 | opp_overlap 1343609 1343608 TTACTTTAAAAATTT TAACCTTCA AATG TGAAGGTTA TTTTTTATTGCCCAA USA300HOU_1251 1343717 - 1343818 + | hypothetical protein USA300HOU_1252 1343864 - 1344130 + | hypothetical protein USA300HOU_1253 1344127 - 1344264 + | hypothetical protein USA300HOU_1255 1344693 - 1344983 + | hypothetical protein USA300HOU_1256 1344994 - 1345188 + | hypothetical protein USA300HOU_1257 1345238 - 1345579 + | hypothetical protein USA300HOU_1258 1345586 - 1345777 + | hypothetical protein TERM 1357 1345777 - 1345761 - T 71 -4.5 -4.83677 | overlap 1345756 1345762 AAAATAAAATTAAAA CTATTGT TTT ACAATAA TAGCATCCTTTCTAC USA300HOU_1259 1345856 - 1345761 - | hypothetical protein TERM 1358 1346196 - 1346168 - R 75 -4 -5.24647 | gap 1, overlap 1346163 ATATATAAAATAAAA CAAGATACT-CAA TAAT CTGTAGTACCTTG TTTTGGAATAATGTA USA300HOU_1260 1347351 - 1346326 - | hypothetical protein USA300HOU_1261 1347621 - 1347818 + | hypothetical protein TERM 1359 1347827 - 1347857 + F 86 -9.9 -3.85698 | overlap 1347831 TAAATAATATGACGT GAAAGGTGCAAAA TGTTT TTTTGTGCCTTTC TTTATAGGAGAAAAG TERM 1360 1348597 - 1348582 - g 71 -3.2 -5.06585 | overlap 1348583 GAAATCATAGAAAAA TCATCG TAAT CGATGG TCAACTAGGTTATGT cls 1347876 - 1349357 + | cardiolipin synthetase TERM 1361 1349370 - 1349390 + F 86 -6.1 -5.45802 | TAATTTATTTGTAAG GAGTCTCGA TTA TAGAGGCTC TTTTTATTTTGCCCA USA300HOU_1263 1349541 - 1350440 + | ABC transporter ATP-binding protein USA300HOU_1264 1350409 - 1351140 + | ABC transporter ATP-binding protein TERM 1362 1351181 - 1351159 - g 71 -6.4 -4.17491 | ATGAAATTTTTAAAA GATACTTCAA TTG CTGAAATATC GTCTATAGTTTATCT USA300HOU_1265 1351144 - 1352235 + | sensor histidine kinase USA300HOU_1266 1352232 - 1352834 + | response regulator USA300HOU_1267 1353135 - 1352947 - | hypothetical protein nucA 1353274 - 1353807 + | thermonuclease TERM 1363 1353892 - 1353947 + T 100 -9.4 -4.44548 | gap 1, opp_overlap 1353892 1353897 ATATATAGAAATAAT TTAAAGGCATAATAA-CCATAGTGC GTATCGA GCGTAATGGATTATTATGCCTTTGA TTTTACTTGAATATA USA300HOU_1269 1354804 - 1353950 - | hypothetical protein TERM 1364 1355207 - 1355219 + G 74 -5.5 -4.69053 | AAATTTCACGGTGAA GTTGC CAT GCAGC TTTTCTTAAATGATG USA300HOU_1270 1355135 - 1355710 + | hypothetical protein TERM 1365 1355712 - 1355761 + T 73 -8.2 -3.51785 | gap 1, opp_overlap 1355717, overlap 1355717 CAATAAATAATTAAG AAAAAGCAATTCATAACGCA-GT TGAAT ACATGTGTTACGAATTGCTTTTA TATTAGTTTTTATCA TERM 1366 1355717 - 1355756 + T 87 -8.1 -4.77629 | gap 1, opp_overlap 1355717, overlap 1355712 AATAATTAAGAAAAA GCAATTCATAACGCA-GT TGAAT ACATGTGTTACGAATTGC TTTTATATTAGTTTT TERM 1367 1355756 - 1355717 - T 93 -8.1 -5.23396 | gap 1, opp_overlap 1355712 1355717 AATAATTAAGAAAAA GCAATTCATAACGCA-GT TGAAT ACATGTGTTACGAATTGC TTTTATATTAGTTTT lysC1 1357146 - 1355764 - | aspartate kinase TERM 1368 1356986 - 1357001 + g 72 -6.2 -4.29905 | opp_overlap 1356985 1356986 ACCTTTTCATATAAT CTGATT AACA AATCAG TTGTTTTAATATCAT USA300HOU_1272 1357152 - 1357259 + | hypothetical protein thrA 1357337 - 1358617 + | homoserine dehydrogenase thrC 1358623 - 1359684 + | threonine synthase TERM 1369 1359725 - 1359742 + G 73 -7 -4.04576 | opp_overlap 1359723 1359725 ATTCCTGCATCAACA GCCAAC CTTGGA GTTGGC TTTGATTCTATAGGT thrB 1359686 - 1360600 + | homoserine kinase USA300HOU_1276 1360658 - 1361461 + | HAD family phosphatase TERM 1370 1361520 - 1361471 - f 70 -6 -4.26189 | gap 1, opp_overlap 1361474, overlap 1361474 TTATAAATTTTAAAA TAAGCCTTAA-CACATGATATTT GAATA AGATATCTTGTGGTTAAGGCTTT TTATTTTTGTGAAAA TERM 1371 1361517 - 1361474 - f 79 -7.7 -4.2354 | gap 1, opp_overlap 1361474, overlap 1361471 TAAATTTTAAAATAA GCCTTAA-CACATGATATTT GAATA AGATATCTTGTGGTTAAGGC TTTTTATTTTTGTGA TERM 1372 1361474 - 1361517 + F 100 -9.9 -5.69262 | gap 1, opp_overlap 1361471 1361474 TAAATTTTAAAATAA GCCTTAA-CACATGATATTT GAATA AGATATCTTGTGGTTAAGGC TTTTTATTTTTGTGA TERM 1373 1362273 - 1362237 - f 100 -13.1 -4.79223 | overlap 1362238 TTACACCATTAAAAA GCGGCAAATGCTATAGA TAA TCTAAAGCATCTGCCGT ATGAGAATTTATTTA TERM 1374 1362272 - 1362238 - f 100 -16.6 -3.46811 | overlap 1362237 TACACCATTAAAAAG CGGCAAATGCTATAGA TAA TCTAAAGCATCTGCCG TATGAGAATTTATTT TERM 1375 1362527 - 1362552 + F 73 -5.5 -4.67552 | gap 1 AAAGGTGCTTTATAT GGT-AGGACCTT ATT AGGGTCTTGACC TTGTTTTTTAATAGC katA 1364040 - 1365461 + | catalase rpmG2 1365543 - 1365701 + | 50S ribosomal protein L33 TERM 1376 1365737 - 1365767 + F 93 -8.2 -5.28826 | opp_overlap 1365737 CGATTTGAAAATAAA GCGGGCTTACCTAT TAT ATTGGGGAGCTCGC TTTTTTATGAAATTT TERM 1377 1366128 - 1366114 - f 75 -7.2 -4.08706 | opp_overlap 1366114 GTGTTATTATATAAA TCGTAA TAA TTACGA TTTGATAAAAAGTGA TERM 1378 1366114 - 1366128 + F 71 -7.2 -3.73224 | opp_overlap 1366114 GTGTTATTATATAAA TCGTAA TAA TTACGA TTTGATAAAAAGTGA TERM 1379 1366490 - 1366537 + F 79 -10.2 -2.90349 | opp_overlap 1366496, overlap 1366496 1366532 AGTATATACGAATGC TATAAACTGAATGTTTTCTCAT ATTA ATAAGGAAACATTCGGTTTTTA ATTTGCATTTAAAAA TERM 1380 1366531 - 1366496 - f 71 -7 -3.93236 | opp_overlap 1366490 1366496 TACGAATGCTATAAA CTGAATGTTTTCTCAT ATTA ATAAGGAAACATTCGG TTTTTAATTTGCATT TERM 1381 1366496 - 1366531 + F 100 -9.2 -5.01042 | opp_overlap 1366496, overlap 1366490 TACGAATGCTATAAA CTGAATGTTTTCTCAT ATTA ATAAGGAAACATTCGG TTTTTAATTTGCATT TERM 1382 1368530 - 1368506 - f 85 -5.9 -5.36441 | opp_overlap 1368506 TGGTCACAGAAAAAA TATTTTAAATG ATA CGTTTAAAATA TTAGGTGTTGGTGTT TERM 1383 1368506 - 1368530 + F 70 -8.1 -3.21464 | opp_overlap 1368506 TGGTCACAGAAAAAA TATTTTAAATG ATA CGTTTAAAATA TTAGGTGTTGGTGTT TERM 1384 1368741 - 1368770 + F 100 -15.1 -4.65153 | opp_overlap 1368740 1368739 AAAAAATAATAATGG CTCGCTCCTGTAA ATTA TTACGGGGGCGAG TTTTAATTTGTGTAA TERM 1385 1368916 - 1368888 - f 100 -13.3 -5.14682 | TTAGAATAAATAAAA CCTCTTGAAAACG TAA CTTTTTCAAGAGG TCCAAAATTTATAAA TERM 1386 1369989 - 1370018 + F 86 -5.1 -5.61689 | GATACATTGTCACAA CGTTATTTTGC CTATTTTT GCGAAATAGCG TTTTTTATTACTTTT TERM 1387 1370391 - 1370409 + F 74 -3.2 -5.46706 | opp_overlap 1370393, overlap 1370393 GACATTATAACTTGA AATAAGTA TTT TACTTATC TTTTTATTTTAAAAT TERM 1388 1370393 - 1370407 + F 71 -5.8 -4.3613 | opp_overlap 1370393, overlap 1370391 CATTATAACTTGAAA TAAGTA TTT TACTTA TCTTTTTATTTTAAA tkt 1370471 - 1372459 + | transketolase TERM 1389 1372487 - 1372515 + F 83 -9 -4.1964 | overlap 1372490 AAGCGAGTATGTTTA GAAGTCTAGGAT GCATA ATCTTAGGCTTC TTTTAAAGTGTTGAA USA300HOU_1280 1372692 - 1372979 + | hypothetical protein TERM 1390 1372994 - 1373024 + F 100 -9.9 -4.91511 | gap 1, opp_overlap 1372992 1372996 AATTCGCAATTGATA GAGGCTATTTTCCA GATA TGGAAA-TGGCCTC TTTTTATAATCAAAT TERM 1391 1375405 - 1375391 - g 79 -8.6 -3.78436 | AAGGGATATTAAGAA CACTGT TTG ACAGTG AAAAATTTGAAGCTA TERM 1392 1375874 - 1375862 - g 76 -6.3 -4.59424 | AAATTGAAACTAAAA TTGCT AAT AGCAA AAAAGATATTTCTAA TERM 1393 1375967 - 1375991 + G 72 -5.1 -4.71426 | opp_overlap 1375967 1375983, overlap 1375983 TGTTAGAAGAAAATG GAGATTTAATT GAA AGTAAAATCTC TTTTATTGATAAAAC sbcC 1374874 - 1377903 + | exodeoxyribonuclease SbcC TERM 1394 1379738 - 1379749 + F 71 -5.8 -4.38322 | GAGTGTTTAATCATG TGCC ATTT GGCA TTGTTTTATCGTTGA TERM 1395 1380213 - 1380256 + F 100 -12.8 -4.96501 | gap 1, opp_overlap 1380213 1380216 TAAGTATTTTAATAA CAAGTAGTATGTC-ATTCTAG TAG CTAGAACAGATATACTACTTG TTTGTTTTTGTGGAA TERM 1396 1380256 - 1380213 - f 100 -12.8 -3.66732 | gap 1, opp_overlap 1380213, overlap 1380216 TAAGTATTTTAATAA CAAGTAGTATGTC-ATTCTAG TAG CTAGAACAGATATACTACTTG TTTGTTTTTGTGGAA TERM 1397 1380253 - 1380216 - f 82 -8.7 -3.96068 | gap 1, opp_overlap 1380213, overlap 1380213 GTATTTTAATAACAA GTAGTATGTC-ATTCTAG TAG CTAGAACAGATATACTAC TTGTTTGTTTTTGTG TERM 1398 1380524 - 1380536 + F 90 -7.7 -5.1925 | opp_overlap 1380523 ACTGAACGAAAATGC GCTTG TAA CAAGC TTTTTTCAATTCTAG TERM 1399 1380646 - 1380630 - f 72 -8 -3.68024 | GGCCCCAACACAGAA GCTGAC GAAAA GTCAGC TTACAATAATGTGCA TERM 1400 1380708 - 1380685 - f 72 -6.8 -4.15222 | opp_overlap 1380691, overlap 1380687 1380691 ATGGGCCCCAACAAA GAGAAATTGG ATTC CCAATTTCTA CAGACAATGCAAGTT TERM 1401 1380706 - 1380687 - f 81 -9.4 -3.6761 | opp_overlap 1380691, overlap 1380685 1380691 GGGCCCCAACAAAGA GAAATTGG ATTC CCAATTTC TACAGACAATGCAAG acnA 1381078 - 1383783 + | aconitate hydratase USA300HOU_1284 1383963 - 1384430 + | hypothetical protein USA300HOU_1285 1384933 - 1384637 - | hypothetical protein TERM 1402 1385294 - 1385256 - R 81 -5.5 -5.26119 | gap 1 TTTGCAAAAATAAAA TAATCCATCAACTGCAAA AAAA TATGCAAT-GATGGACTA ATGTCAAAAAATTGT USA300HOU_1286 1385917 - 1385309 - | hypothetical protein parE 1386123 - 1388114 + | DNA topoisomerase IV subunit B parC 1388114 - 1390516 + | DNA topoisomerase IV subunit A USA300HOU_1289 1390742 - 1390644 - | hypothetical protein alsT 1390766 - 1392226 + | AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter TERM 1403 1392304 - 1392269 - f 87 -8.4 -4.71307 | opp_overlap 1392269 TAAAAATCAAATAAA CCCTGAGGTTTTCA AATTAAAG CGAAAATCTCAGGG TTTTAAATTTGTACT TERM 1404 1392269 - 1392304 + F 100 -9.9 -4.40173 | opp_overlap 1392269 TAAAAATCAAATAAA CCCTGAGGTTTTC AAATTAAAGC GAAAATCTCAGGG TTTTAAATTTGTACT glcT 1392720 - 1393577 + | transcription antiterminator USA300HOU_1292 1393552 - 1393719 + | hypothetical protein TERM 1405 1394309 - 1394283 - g 80 -10.2 -3.05536 | opp_overlap 1394276 1394284 AAACGATTGCTAATA TTGGCGTTGTGA TTG TCACAACACCAT TTGTACTATTCTTTA TERM 1406 1394284 - 1394308 + G 100 -11.5 -4.11081 | opp_overlap 1394283, overlap 1394276 AACGATTGCTAATAT TGGCGTTGTGA TTG TCACAACACCA TTTGTACTATTCTTT USA300HOU_1293 1393712 - 1394920 + | hypothetical protein fmtC 1395401 - 1397923 + | lysyl transferase TERM 1407 1397930 - 1397972 + T 85 -5.7 -5.4387 | gap 1 CACAAATAATTAAAA TCCAAGTGCTAAGAGGTATA CAGT TATGCCTGAT-GCGCTTGGA TTTTTTGGTTTCTAT TERM 1408 1398006 - 1398048 + T 82 -7.9 -4.43012 | opp_overlap 1398008, overlap 1398008 GAATGATTTATAAAA AACGGTACAGATAAGAA TATTTAAGT TTCCTATCTGTACCGTA TTTTAATATTGAAAT TERM 1409 1398008 - 1398046 + T 89 -10.5 -3.81853 | opp_overlap 1398008, overlap 1398006 ATGATTTATAAAAAA CGGTACAGATAAGAA TATTTAAGT TTCCTATCTGTACCG TATTTTAATATTGAA TERM 1410 1398046 - 1398008 - T 100 -12.7 -5.28778 | opp_overlap 1398006 1398008 ATGATTTATAAAAAA CGGTACAGATAAGAA TATTTAAGT TTCCTATCTGTACCG TATTTTAATATTGAA msrA1 1398635 - 1398126 - | methionine sulfoxide reductase A msrR 1398772 - 1399755 + | transcriptional attenuator MsrR TERM 1411 1399811 - 1399753 - g 95 -15 -2.51547 | opp_overlap 1399759 1399763, overlap 1399763 TTTTTAGATGAAGAT TAAAAATAAACAAGGCGATTTCTATC ATACTCA GATAGAAGTCGCCTTGTTCGTTTTCA AAGAATTAATTGGCA TERM 1412 1399759 - 1399805 + G 100 -14 -4.09739 | opp_overlap 1399753 1399763, overlap 1399763 GATGAAGATTAAAAA TAAACAAGGCGATTTCTATC ATACTCA GATAGAAGTCGCCTTGTTCG TTTTCAAAGAATTAA TERM 1413 1399763 - 1399801 + G 100 -17 -3.66908 | opp_overlap 1399763 1399753, overlap 1399759 AAGATTAAAAATAAA CAAGGCGATTTCTATC ATACTCA GATAGAAGTCGCCTTG TTCGTTTTCAAAGAA TERM 1414 1399801 - 1399763 - g 100 -14.8 -4.95618 | opp_overlap 1399759 1399763, overlap 1399753 AAGATTAAAAATAAA CAAGGCGATTTCTATC ATACTCA GATAGAAGTCGCCTTG TTCGTTTTCAAAGAA USA300HOU_1297 1399745 - 1399849 + | hypothetical protein USA300HOU_1298 1400031 - 1399843 - | 4-oxalocrotonate tautomerase TERM 1415 1399869 - 1399887 + g 78 -7.4 -4.25325 | ACTTTCTTACGCCAG CCACACCA TAA TGGTTTGG TTTCATTTCTTCTAT USA300HOU_1299 1400176 - 1401438 + | ImpB/MucB/SamB family DNA-damage repair protein tyrA 1402666 - 1401575 - | prephenate dehydrogenase USA300HOU_1301 1402831 - 1403862 + | M42 family peptidase TERM 1416 1404073 - 1404119 + F 73 -3.9 -5.27335 | gap 1 TATGTTAACTAAGGT GGCACCACGGTAACGCGT CCTTACAGGTAT ATGCGTTAT-GTGGTGTC TTTTTATTTAGACAA TERM 1417 1404295 - 1404331 + F 100 -13.2 -5.00616 | gap 1, overlap 1404292 TTTAGGTGGTACCAC GCGTCAGCGTCCTTTAT ATTG AT-AAGGATGCTGGCGC TTTTTTGAAAGGAGC TERM 1418 1405576 - 1405551 - g 75 -9.9 -2.68109 | gap 1, opp_overlap 1405545 1405551, overlap 1405550 ATATATGAACAATAT CCAC-ATAAACG GGG CGTTTATAGTGG TGGTGTTGGATACAT TERM 1419 1405551 - 1405576 + G 75 -9.9 -2.76171 | gap 1, opp_overlap 1405551 1405550, overlap 1405545 ATATATGAACAATAT CCAC-ATAAACG GGG CGTTTATAGTGG TGGTGTTGGATACAT trpE 1404354 - 1405760 + | anthranilate synthase component I trpG 1405757 - 1406323 + | anthranilate synthase component II TERM 1420 1406684 - 1406660 - g 70 -4.3 -4.6759 | overlap 1406650 1406649 AACATGGTAATAAAA GTATTACCTCA AAT TCAGGTAGTAC GGATTTGTTAAATCA trpD 1406320 - 1407327 + | anthranilate phosphoribosyltransferase trpC 1407329 - 1408111 + | indole-3-glycerol phosphate synthase TERM 1421 1408171 - 1408187 + G 70 -7.3 -3.80858 | opp_overlap 1408171 GCGGCCAGTCAATTA CCTATTG ATG CGATAGG TTTCATCCATTATGA trpF 1408108 - 1408743 + | phosphoribosylanthranilate isomerase TERM 1422 1409749 - 1409731 - g 78 -7.4 -4.11751 | AGTAACTTTTGAAAA TGCTAGTG ATA CACAAGCA ATGAATGCTTTAATC trpB 1408736 - 1409950 + | tryptophan synthase subunit beta trpA 1409943 - 1410671 + | tryptophan synthase subunit alpha TERM 1423 1410759 - 1410790 + F 76 -3.9 -5.48303 | opp_overlap 1410754 1410759 AGAAATGATACAAAA GTAATATGAGC AAACCCAAAC GTTCATATTAC TTTTTTTGAAATTGT femA 1410993 - 1412255 + | methicillin resistance factor FemA TERM 1424 1412498 - 1412509 + G 70 -4.4 -4.70879 | CTATTCGAATCGTGG TCCA GTAA TGGA TTTTTCAGATTTAGG femB 1412274 - 1413533 + | methicillin resistance factor FemB TERM 1425 1413549 - 1413577 + F 90 -6.1 -5.53079 | ATGTAAATGATGTTA GGGCTTATAGT TATTGAT ACTATAGGCTC TTTTTTATATGTTTT USA300HOU_1311 1414222 - 1414989 + | hydrolase TERM 1426 1415033 - 1414993 - T 100 -11.3 -5.42975 | opp_overlap 1414993 1414994 1414995, overlap 1414995 TCATATAAATAAAAA CACCCCTATCAAATGATAA TCA TTATCAATCGATAGGGGCT ATTTTAATAAAATTC TERM 1427 1414994 - 1415032 + T 89 -10.4 -3.74158 | opp_overlap 1414993 1414995, overlap 1414993 1414995 CATATAAATAAAAAC ACCCCTATCAAATGATAA TCA TTATCAATCGATAGGGGC TATTTTAATAAAATT TERM 1428 1414995 - 1415031 + T 100 -13.9 -2.83772 | opp_overlap 1414995 1414993, overlap 1414994 1414993 ATATAAATAAAAACA CCCCTATCAAATGATAA TCA TTATCAATCGATAGGGG CTATTTTAATAAAAT TERM 1429 1415031 - 1414995 - T 100 -16.1 -4.33302 | opp_overlap 1414994 1414993 1414995, overlap 1414993 ATATAAATAAAAACA CCCCTATCAAATGATAA TCA TTATCAATCGATAGGGG CTATTTTAATAAAAT USA300HOU_1312 1415510 - 1415037 - | hypothetical protein USA300HOU_1313 1416335 - 1415634 - | oligopeptide ABC transporter ATP-binding protein USA300HOU_1314 1417104 - 1416328 - | oligopeptide ABC transporter ATP-binding protein USA300HOU_1315 1417918 - 1417088 - | oligopeptide ABC transporter membrane protein USA300HOU_1316 1418864 - 1417911 - | oligopeptide ABC transporter membrane protein TERM 1430 1418782 - 1418807 + g 85 -9.1 -3.91911 | opp_overlap 1418789 TCAAGATGTAATATT TTATCAACAGG ATTG CCTGGTGATAA TTTCATTAAAATGAA TERM 1431 1418914 - 1418930 + r 74 -5.1 -4.89063 | ATAGTCCCCCTCCTT GTGTAAG TTA CTAACAC TTTCTTTTTACATGA USA300HOU_1317 1419545 - 1419201 - | hypothetical protein TERM 1432 1419797 - 1419779 - g 72 -8.2 -3.41292 | opp_overlap 1419781, overlap 1419777 ACCTTTAAGAGAAGA TGTTCCTG TTT CAGAAACA TGGGATTTAGTAGAC TERM 1433 1420849 - 1420862 + G 74 -5.3 -4.68209 | CAAGTCCATACTTTA CACAT TCAT ATGTG TTTATTTCTTGGACT TERM 1434 1421431 - 1421415 - g 77 -5.1 -5.18561 | GAAACATTGAAAAAA GGTGGTA GTG TATCACC TGTCGAACTTGCAAA USA300HOU_1318 1419750 - 1421564 + | M3 family oligoendopeptidase F TERM 1435 1421598 - 1421633 + T 100 -12.8 -5.4477 | opp_overlap 1421598 GTAGAACAATATAAA CCAAGATTTTCACATT ACTA ATTGTGAGAATCTTGG TTTTTTTGAGGGTTT TERM 1436 1421633 - 1421598 - T 100 -10.6 -4.37544 | opp_overlap 1421598 GTAGAACAATATAAA CCAAGATTTTCACATT ACTA ATTGTGAGAATCTTGG TTTTTTTGAGGGTTT USA300HOU_1319 1422345 - 1421704 - | PnaS family phosphate:sodium (Na+) symporter TERM 1437 1421752 - 1421742 - G 71 -3.2 -5.12987 | TTAAATAAAAATAAA CACT TTC AGCG ATGTTAATAATATGA pstB 1423203 - 1422352 - | phosphate ABC transporter ATP-binding protein pstA 1424167 - 1423250 - | phosphate ABC transporter ATP-binding protein pstC 1425095 - 1424169 - | phosphate ABC transporter ATP-binding protein USA300HOU_1323 1425262 - 1425155 - | hypothetical protein pstS 1426269 - 1425286 - | phosphate ABC transporter ATP-binding protein TERM 1438 1426512 - 1426567 + r 82 -8.7 -3.91032 | gap 1, opp_overlap 1426519, overlap 1426519 GGGACATAAATCCCT AAAAAAACAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTGTTCTCTA TTTATACAATACTTC TERM 1439 1426560 - 1426519 - R 100 -15.6 -5.4477 | gap 1, opp_overlap 1426519 1426512 AAATCCCTAAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 1440 1426519 - 1426560 + r 100 -15.6 -3.80279 | gap 1, opp_overlap 1426519, overlap 1426512 AAATCCCTAAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 1441 1426706 - 1426722 + r 72 -8 -3.68024 | GGCACATTGTTGTAA GCTGAC TATAT GTCAGC TTCTGTGTTGGGGCC TERM 1442 1426880 - 1426867 - R 85 -3.9 -5.75822 | CAGAAACGAAAAAAA TCTAT AGTC ATAGA AAAATTTATGTAGAG TERM 1443 1427030 - 1427011 - R 73 -5.8 -4.56314 | gap 1, opp_overlap 1427014, overlap 1427013 1427014 1427016 TTAATATAAGGAAAA TAGCAGCTC AAC GAGCTG-TA CATTATAAAATACAT TERM 1444 1427028 - 1427014 - R 77 -10 -2.91057 | opp_overlap 1427014, overlap 1427013 1427011 1427016 ATATAAGGAAAATAG CAGCTC AAC GAGCTG TACATTATAAAATAC TERM 1445 1427014 - 1427028 + r 76 -10 -2.60079 | opp_overlap 1427014 1427013 1427011 1427016 ATATAAGGAAAATAG CAGCTC AAC GAGCTG TACATTATAAAATAC TERM 1446 1427055 - 1427088 + r 93 -8.3 -5.16572 | opp_overlap 1427055 ATACATATCAAAAAA GCTGATTTCCATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT TERM 1447 1427088 - 1427055 - R 100 -12.7 -5.25893 | opp_overlap 1427055 ATACATATCAAAAAA GCTGATTTCCATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT TERM 1448 1427231 - 1427212 - R 95 -6.4 -6.11243 | ATTGAATAAAAAAAA CACGCATC CTAC GACACGTG TAAAAATGATTATTC USA300HOU_1326 1428143 - 1427241 - | hypothetical protein USA300HOU_1327 1428290 - 1429891 + | ABC transporter ATP-binding protein TERM 1449 1430179 - 1430217 + F 100 -14 -5.70761 | opp_overlap 1430178 TAATAGACATTAACT GGGCGTCTCGATGCTA ATATTTA TAGCATCGAGGTGTCC TTTTTATTTTATTTT TERM 1450 1430680 - 1430706 + F 100 -11.7 -5.97979 | opp_overlap 1430680 1430683 1430686 TTGTATATAGATTAA GAGCAAGTTCG CATTC CGAACTTGTTC TTTTTTTATTATTGT TERM 1451 1430706 - 1430680 - f 78 -9.5 -3.35197 | opp_overlap 1430680, overlap 1430683 1430686 TTGTATATAGATTAA GAGCAAGTTCG CATTC CGAACTTGTTC TTTTTTTATTATTGT TERM 1452 1430703 - 1430683 - f 75 -9.8 -2.54059 | opp_overlap 1430680, overlap 1430680 1430686 TATATAGATTAAGAG CAAGTTCG CATTC CGAACTTG TTCTTTTTTTATTAT lysC2 1430751 - 1431956 + | aspartate kinase asd 1432020 - 1433009 + | aspartate semialdehyde dehydrogenase dapA 1433011 - 1433898 + | dihydrodipicolinate synthase dapB 1433895 - 1434617 + | dihydrodipicolinate reductase dapD 1434644 - 1435363 + | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase TERM 1453 1435389 - 1435414 + F 81 -8.4 -4.1023 | GTATAATAATTTCAA GGTTGAGATA CGATTA TGTCTCAACC TTATTGTTTAGCATT TERM 1454 1435851 - 1435833 - g 71 -7.4 -3.58533 | opp_overlap 1435835 GTACAACGTTGCAAA GACATGCA AGA TGCAGGTC AATTACCGCAAAATG USA300HOU_1333 1435506 - 1436657 + | M20D subfamily hippurate hydrolase alr1 1436662 - 1437747 + | alanine racemase lysA2 1437737 - 1439002 + | diaminopimelate decarboxylase TERM 1455 1439017 - 1439055 + T 77 -5.9 -4.93318 | opp_overlap 1439018, overlap 1439018 AAAATAAACAAAGTA ATCCCCGAAGCACAGAA AATTA TACTGTGACTCGGGGAA TTTTTATGCATTATA TERM 1456 1439054 - 1439018 - T 95 -11.6 -3.8293 | opp_overlap 1439018 1439017 AAATAAACAAAGTAA TCCCCGAAGCACAGAA AATTA TACTGTGACTCGGGGA ATTTTTATGCATTAT TERM 1457 1439018 - 1439054 + T 81 -9.4 -3.54906 | opp_overlap 1439018, overlap 1439017 AAATAAACAAAGTAA TCCCCGAAGCACAGAA AATTA TACTGTGACTCGGGGA ATTTTTATGCATTAT USA300HOU_1336 1439643 - 1439242 - | hypothetical protein TERM 1458 1439752 - 1439727 - R 93 -5.6 -5.71712 | gap 1, overlap 1439730 GGTGATATAAAAAAA GAG-TTCTCAA TTTGG TTGAGAAACTC ATCGCGTTAAGTATT TERM 1459 1439808 - 1439787 - R 100 -8.8 -5.05079 | opp_overlap 1439787 ATAAGCATATAAAAA CACCTTAC TTCTTG GTAAGGTG TTAGTTAAAATCAAT TERM 1460 1439787 - 1439808 + r 78 -9.5 -3.35992 | opp_overlap 1439787 ATAAGCATATAAAAA CACCTTACT TCTT GGTAAGGTG TTAGTTAAAATCAAT cspA 1440040 - 1439840 - | cold shock protein CspA xpaC 1440976 - 1441599 + | hypothetical protein telA 1441631 - 1442767 + | tellurite resistance protein TERM 1461 1442840 - 1442873 + T 100 -12 -5.25893 | opp_overlap 1442840 AGGCAATGTAAAAAA GCTGATTTCTATTA TTTATT TGATAGAAATCAGC TTTTTTGATATGTAT TERM 1462 1442873 - 1442840 - T 100 -9.8 -5.16572 | opp_overlap 1442840 AGGCAATGTAAAAAA GCTGATTTCTATTA TTTATT TGATAGAAATCAGC TTTTTTGATATGTAT TERM 1463 1442898 - 1442917 + T 73 -5.8 -4.56314 | gap 1, opp_overlap 1442900, overlap 1442899 1442900 1442902 ATGTATTTTATAATG TA-CAGCTC GTT GAGCTGCTA TTTTCCTTATATTAA TERM 1464 1442914 - 1442900 - T 76 -10 -2.60079 | opp_overlap 1442900 1442899 1442898 1442902 GTATTTTATAATGTA CAGCTC GTT GAGCTG CTATTTTCCTTATAT TERM 1465 1442900 - 1442914 + T 77 -10 -2.91057 | opp_overlap 1442900, overlap 1442899 1442898 1442902 GTATTTTATAATGTA CAGCTC GTT GAGCTG CTATTTTCCTTATAT USA300HOU_1341 1443427 - 1443035 - | IS1272 transposase TERM 1466 1443208 - 1443183 - G 71 -7.7 -3.55761 | opp_overlap 1443187, overlap 1443186 CATTGATGTCTCAAA GAACATGATGA ACAG TCATCACATTC ATATAGCTTGAAGTC TERM 1467 1443744 - 1443689 - R 82 -8.7 -3.91032 | gap 1, opp_overlap 1443696, overlap 1443696 GAAGTATTGTATAAA TAGAGAACAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTGTTTTTTT AGGGATTTATGTCCC TERM 1468 1443737 - 1443696 - R 100 -15.6 -3.80279 | gap 1, opp_overlap 1443696, overlap 1443689 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTTAGGGATTT TERM 1469 1443696 - 1443737 + r 100 -15.6 -5.4477 | gap 1, opp_overlap 1443696 1443689 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTTAGGGATTT brnQ2 1445123 - 1443780 - | LIVCS family branched chain amino acid:cation symporter TERM 1470 1444529 - 1444513 - G 72 -5.1 -4.71382 | opp_overlap 1444523, overlap 1444514 ACAATCATTGAAAAA GCAATTG CTG CAATGGC ATCCATTGTTAAATA TERM 1471 1444523 - 1444537 + g 71 -8.6 -3.08471 | opp_overlap 1444513 1444514 AAAAAGCAATTGCTG CAATGG CAT CCATTG TTAAATAGCCTTGTG USA300HOU_1343 1447234 - 1445348 - | hypothetical protein TERM 1472 1445600 - 1445579 - G 82 -8.7 -4.02108 | TTGACTATAATTAAA TGCAGACGG TTCG CCGTCTGAA AATACGATTAAAAAT USA300HOU_1344 1448039 - 1447248 - | nitric-oxide reductase USA300HOU_1345 1448423 - 1448220 - | hypothetical protein USA300HOU_1346 1449261 - 1448452 - | hypothetical protein TERM 1473 1449788 - 1449742 - R 88 -7.6 -4.98911 | gap 1, opp_overlap 1449745, overlap 1449743 1449745 CATTATAAAAATAAA GTACAGCAGTAAGAT-ATTTC GACTAG GAAATAATCTTACTGCTGTTT GTTATTGATTTAATC TERM 1474 1449787 - 1449743 - R 90 -11.1 -3.5772 | gap 1, opp_overlap 1449745, overlap 1449742 1449745 ATTATAAAAATAAAG TACAGCAGTAAGAT-ATTTC GACTAG GAAATAATCTTACTGCTGTT TGTTATTGATTTAAT TERM 1475 1449745 - 1449785 + r 100 -13.7 -4.54404 | gap 1, opp_overlap 1449743 1449742 1449745 TATAAAAATAAAGTA CAGCAGTAAGAT-ATTTC GACTAG GAAATAATCTTACTGCTG TTTGTTATTGATTTA TERM 1476 1449785 - 1449745 - R 100 -13.7 -3.34078 | gap 1, opp_overlap 1449745, overlap 1449743 1449742 TATAAAAATAAAGTA CAGCAGTAAGAT-ATTTC GACTAG GAAATAATCTTACTGCTG TTTGTTATTGATTTA odhB 1451109 - 1449841 - | dihydrolipoamide acetyltransferase TERM 1477 1449873 - 1449890 + g 71 -5.7 -4.59773 | AGTCTTCTGGGTTTT CAATTAA TTCT TTAATTG TTTTTAAGAATCCAA TERM 1478 1450472 - 1450491 + g 84 -6.6 -5.02476 | GTTAACATAGCTGTA TTATTAGA TACC TCTAATAA TTTTTTGGCAGCTGT sucA 1453921 - 1451123 - | alpha-ketoglutarate decarboxylase TERM 1479 1452969 - 1452983 + g 77 -8.6 -3.62597 | opp_overlap 1452968 ACAGGTGCAACAATT TCCAAG TGA CTTGGA TTGTTAGCCAGTGCA TERM 1480 1453063 - 1453045 - G 70 -8.2 -3.18681 | TTTTAATGCCACCAA GGTGATAT TTC ACATCACC AGTCCATCCAGCAGT TERM 1481 1453877 - 1453903 + g 77 -5.3 -5.00851 | gap 1, opp_overlap 1453869, overlap 1453869 ACCTAAATTCGCACC GAAGTTTACAGG AGCC TCTG-AAACTTC TTTTCTTTCGTTAGT TERM 1482 1454019 - 1454046 + r 85 -11.5 -2.71593 | opp_overlap 1454019, overlap 1454022 1454025 TTTATCTGCTAAAAA GAAGAATCAAC AAAAGC GTTGATTCTTC TAGGTTTATAGATGT TERM 1483 1454046 - 1454019 - R 100 -12.2 -4.58395 | opp_overlap 1454019 1454022 1454025 TTTATCTGCTAAAAA GAAGAATCAACA AAAG CGTTGATTCTTC TAGGTTTATAGATGT USA300HOU_1349 1455560 - 1454205 - | sensor histidine kinase arlR 1456216 - 1455557 - | response regulator USA300HOU_1351 1456609 - 1456478 - | hypothetical protein USA300HOU_1352 1456886 - 1456686 - | hypothetical protein TERM 1484 1456947 - 1456990 + H 93 -8.4 -5.24129 | gap 1, opp_overlap 1456952, overlap 1456952 TATAACAACGTTTTA TAAAAGCAGTAAACCCTTACG ACA CTTTA-GGTTTACTGCTTTTG TTTTTTGTAAAAAGA TERM 1485 1456985 - 1456952 - H 74 -6.1 -4.386 | gap 1, opp_overlap 1456947 1456952 CAACGTTTTATAAAA GCAGTAAACCCTTACG ACA CTTTA-GGTTTACTGC TTTTGTTTTTTGTAA TERM 1486 1456952 - 1456985 + H 86 -6.1 -5.49579 | gap 1, opp_overlap 1456952, overlap 1456947 CAACGTTTTATAAAA GCAGTAAACCCTTACG ACA CTTTA-GGTTTACTGC TTTTGTTTTTTGTAA TERM 1487 1457027 - 1457009 - H 100 -13.2 -5.26119 | opp_overlap 1457012 TTTGTAAAAAGAAAA CCATACGC TAT GCGTATGG TTCAGAAAAGGTTCT USA300HOU_1353 1457130 - 1457615 + | IS200 transposase TERM 1488 1457631 - 1457610 - T 85 -2.9 -5.88476 | overlap 1457612 AAAAGAAAGAAAAAA GAGTAACCC TTTA GGGTTGCTG GAATAGTAGTGCAGT TERM 1489 1457629 - 1457612 - T 71 -5.5 -4.51345 | overlap 1457610 AAGAAAGAAAAAAGA GTAACCC TTTA GGGTTGC TGGAATAGTAGTGCA TERM 1490 1457711 - 1457730 + T 100 -13.6 -4.71222 | opp_overlap 1457711 TAGCCGCAGAACAAA CCACCCGT TCAC ACGGGTGG TTTTGATTTTACTAT TERM 1491 1457730 - 1457711 - T 100 -13.6 -4.31433 | opp_overlap 1457711 TAGCCGCAGAACAAA CCACCCGT TCAC ACGGGTGG TTTTGATTTTACTAT USA300HOU_1354 1458360 - 1457746 - | hypothetical protein murG 1459447 - 1458377 - | N-acetylglucosaminyl transferase USA300HOU_1356 1459968 - 1459459 - | acetyltransferase TERM 1492 1460118 - 1460108 - R 70 -4 -4.85618 | AAATAACCAATAAAA GTAT CAT ATAC CAATTAATTGATTGT TERM 1493 1460328 - 1460280 - R 100 -12.8 -5.09204 | opp_overlap 1460284 1460286, overlap 1460284 AGACGTCAATAAAAA TAAACACGCCTCCTAAAT-TGCTA TCT TTGCAAATTTAGGAGGCGTGTC-A TTAACATAATAATAA TERM 1494 1460325 - 1460284 - R 100 -18.3 -5.05606 | gap 1, opp_overlap 1460284 1460286, overlap 1460280 GTCAATAAAAATAAA CACGCCTCCTAAAT-TGCTA TCT TTGCAAATTTAGGAGGCGTG TCATTAACATAATAA TERM 1495 1460284 - 1460325 + r 100 -18.3 -2.74012 | gap 1, opp_overlap 1460284 1460280, overlap 1460286 GTCAATAAAAATAAA CACGCCTCCTAAAT-TGCTA TCT TTGCAAATTTAGGAGGCGTG TCATTAACATAATAA TERM 1496 1460286 - 1460323 + r 100 -15.1 -2.91452 | gap 1, opp_overlap 1460284 1460280, overlap 1460284 CAATAAAAATAAACA CGCCTCCTAAAT-TGCTA TCT TTGCAAATTTAGGAGGCG TGTCATTAACATAAT ctpA 1461858 - 1460368 - | peptidase TERM 1497 1462028 - 1461990 - R 85 -10.5 -3.60627 | overlap 1461996 TTAGTTTATTTTAAA TTAAAACCAGGATAACG AATTG CATCACCCTGGTTCTAA CTATTATTATTAAAA TERM 1498 1462022 - 1461996 - R 81 -7.3 -4.55798 | overlap 1461990 TATTTTAAATTAAAA CCAGGATAACG AATTG CATCACCCTGG TTCTAACTATTATTA USA300HOU_1358 1462271 - 1462050 - | hypothetical protein USA300HOU_1359 1462771 - 1462271 - | PTS family glucose/glucoside (glc) porter component IIA msrB 1463211 - 1462783 - | methionine sulfoxide reductase B msrA2 1463737 - 1463204 - | methionine sulfoxide reductase A USA300HOU_1362 1464662 - 1463823 - | hypothetical protein dfrB 1465156 - 1464677 - | dihydrofolate reductase thyA 1466312 - 1465356 - | thymidylate synthase USA300HOU_1365 1467173 - 1466736 - | hypothetical protein USA300HOU_1366 1468313 - 1467189 - | hypothetical protein USA300HOU_1367 1468602 - 1468351 - | hypothetical protein USA300HOU_1368 1468835 - 1468614 - | hypothetical protein USA300HOU_1369 1469053 - 1469757 + | hypothetical protein USA300HOU_1370 1469953 - 1469822 - | hypothetical protein TERM 1499 1469857 - 1469880 + g 71 -6.8 -4.15222 | opp_overlap 1469863, overlap 1469859 1469863 AACTTGCATTGTCTG TAGAAATTGG GAAT CCAATTTCTC TTTGTTGGGGCCCAT TERM 1500 1469859 - 1469878 + g 80 -9.4 -3.6761 | opp_overlap 1469863, overlap 1469857 1469863 CTTGCATTGTCTGTA GAAATTGG GAAT CCAATTTC TCTTTGTTGGGGCCC TERM 1501 1470041 - 1470029 - H 90 -7.7 -5.1925 | opp_overlap 1470028 CTAGAATTGAAAAAA GCTTG TTA CAAGC GCATTTTCGTTCAGT TERM 1502 1470189 - 1470216 + H 90 -7.8 -5.18357 | AGCGAGTATTTTAAA CACGTGTTACTT ATTT AAGTGATGCGTG TTTTTTAATGGATTA USA300HOU_1371 1470298 - 1470699 + | ribonuclease H TERM 1503 1470698 - 1470740 + T 89 -10.6 -3.85698 | opp_overlap 1470702, overlap 1470700 1470702 TTAAAAAGAATAAAT AAAAGGAGCACCGACTGATG TGA TGTCAATCGGTGCTCCTCTA TTTATCAAAGAAACA TERM 1504 1470700 - 1470738 + T 100 -13.2 -3.51934 | opp_overlap 1470702, overlap 1470698 1470702 AAAAAGAATAAATAA AAGGAGCACCGACTGATG TGA TGTCAATCGGTGCTCCTC TATTTATCAAAGAAA TERM 1505 1470736 - 1470702 - T 100 -16.6 -5.20331 | opp_overlap 1470702 1470700 1470698 AAAGAATAAATAAAA GGAGCACCGACTGA TGTGATG TCAATCGGTGCTCC TCTATTTATCAAAGA TERM 1506 1470702 - 1470736 + T 100 -15.8 -3.3353 | opp_overlap 1470702, overlap 1470700 1470698 AAAGAATAAATAAAA GGAGCACCGACTGATG TGA TGTCAATCGGTGCTCC TCTATTTATCAAAGA ebh 1502023 - 1470758 - | extracellular matrix binding protein TERM 1507 1475454 - 1475470 + g 72 -5.1 -4.72486 | overlap 1475456 TTTGCATTTTGAACT GCTGCTT GGT AAGCATC TTTTTGCGGTTTATC TERM 1508 1475832 - 1475848 + g 77 -5.1 -5.06735 | overlap 1475834 TTTGCATTTTGAACT GCTGCTT GGT AAGCATC TTTTTGTGGTTTATC TERM 1509 1475834 - 1475846 + g 71 -6.3 -4.13732 | overlap 1475832 TGCATTTTGAACTGC TGCTT GGT AAGCA TCTTTTTGTGGTTTA TERM 1510 1479558 - 1479569 + g 70 -4.4 -4.73617 | TGAATTGTATTTGGA TCCA TTGT TGGA TTTGTTGTTTGTTTT TERM 1511 1482631 - 1482648 + g 72 -4.9 -4.79174 | overlap 1482633 ATTCAGCTTGTGTGA TAGCATT ATCA AATGCTG TTTTCTTAGTTGGAT TERM 1512 1484630 - 1484645 + g 74 -6.2 -4.60977 | CGTCATAGCTGTATT TAATGC ATCC GCATTA TTTTGTGCTTGTGTT TERM 1513 1484892 - 1484913 + g 70 -3.7 -4.8743 | overlap 1484888 1484887 1484890 1484893 ATTGCTTTTGCTGCA GTGACTGCA CTGT TGTAGTCAG TTTGTTTGTTTTGAC TERM 1514 1486274 - 1486289 + g 71 -7.6 -3.5394 | GTTTTTCGCAGTTGT CTTAGC TTGA GCTAAG TTTCGCGCACCATTT TERM 1515 1487332 - 1487351 + g 89 -9.4 -4.12226 | overlap 1487330 1487335 CATTTTGCGCTTGTT CAACTTGA TGCT TCAAGTTG TCTTTTTGTAATTGT TERM 1516 1489131 - 1489155 + g 73 -7.9 -3.76641 | ACTGTGTTTTGATCA TGGATAGCTTG TTC CAAGTTACCCA TTTGCGTATTCAACT TERM 1517 1492299 - 1492310 + g 72 -5.8 -4.39107 | TTTAAATCACTTGCA TGCG TAAT CGCA TTTGTTGCTTCTGTT TERM 1518 1494010 - 1494022 + g 70 -4.1 -4.80882 | ATGCTGTTAATGCGT TATCG ACA CGATG TTTTTCATCTGAAAT TERM 1519 1494258 - 1494274 + g 73 -7.3 -3.96298 | overlap 1494258 GCTTGATCAATCTTA GTTTGTG CTG CACGAAC TTTAGTTAGTGCGTC TERM 1520 1496183 - 1496198 + g 74 -6.2 -4.5032 | TGTTGCACTGTCATT TGAATC AACA GATTCA TTTCTTGTTACTGTA TERM 1521 1499940 - 1499929 - G 77 -5.8 -4.6645 | opp_overlap 1499929 1499928 CATATACATAGAAAA CTGG ATGC CCAG CTTGTTTTGAAAATG TERM 1522 1502362 - 1502320 - R 90 -6.6 -5.54885 | gap 1 AAGAGTAATAAAAAA CCAATCCCTATGT-TCATT TAAAAT AATGACACATAAGAATCGG TTTATATTTTTGTTT TERM 1523 1502413 - 1502431 + r 74 -9 -3.21914 | opp_overlap 1502411, overlap 1502411 1502409 1502408 GATTTCAATTTAATT CTCAATTA TCA TAATTGAG TATCGTTTTGTTTAG USA300HOU_1373 1503812 - 1502421 - | major facilitator transporter TERM 1524 1503653 - 1503637 - G 72 -5.1 -4.65263 | ATTCCTGAAAATAAA GCAGTTA TAC TAACGGC GATATTAACCGTTCC TERM 1525 1503872 - 1503843 - R 100 -10.2 -4.59109 | opp_overlap 1503843 1503845 TATACTTTTGAAAAA CAGACAAATTCC ATAACA GAAATTTGTCTG TTCCATAGAATAATT USA300HOU_1374 1505291 - 1503969 - | APC family amino acid-polyamine-organocation transporter TERM 1526 1505083 - 1505102 + g 74 -9.3 -3.01712 | overlap 1505081 CCTGTTTCAGGGATT GCAGCAG CAAGTT CTGCTGC TGTTAACCCCGCACA ilvA1 1506362 - 1505322 - | threonine dehydratase ald1 1507575 - 1506457 - | alanine dehydrogenase TERM 1527 1507596 - 1507613 + r 79 -7.1 -4.40732 | overlap 1507591 1507603 ACACTCCTCTTTCAT TTGTGAA TAAT TTCACAA TTATTTTATCCTTTG TERM 1528 1507972 - 1508004 + r 88 -7.9 -5.00765 | opp_overlap 1507972 CCAAATACGCAAAAA GACTATTTCTACC TTGTATC GATAGAAATAGTC TTTTTATACTTAATT TERM 1529 1508004 - 1507972 - R 100 -10.1 -4.77986 | opp_overlap 1507972 CCAAATACGCAAAAA GACTATTTCTACC TTGTATC GATAGAAATAGTC TTTTTATACTTAATT USA300HOU_1377 1508928 - 1508050 - | 5'-3' exonuclease USA300HOU_1378 1512388 - 1508948 - | hypothetical protein TERM 1530 1509047 - 1509015 - G 71 -7.9 -3.64822 | opp_overlap 1509014 1509020 1509026 AGTGTTGTATCTAAA TCAAATGCTAATAAA TCG TTTATTTGCGTTTGA ATATTAGCTTCAAAA USA300HOU_1379 1512692 - 1514032 + | hypothetical protein TERM 1531 1514113 - 1514150 + T 86 -7.1 -5.22039 | opp_overlap 1514113 GGGTTCTATAATAAA TCGTACTGATGGAAAGT TTTT ACTTTTTATCTGTCCGA TTTTTTGAATTTGAA USA300HOU_1380 1514570 - 1514238 - | hypothetical protein USA300HOU_1381 1515799 - 1514654 - | hypothetical protein TERM 1532 1515990 - 1515969 - R 86 -7.3 -5.14563 | CTTTTCATGAAAAAA GCTCTCC ATCATCTA GGAGAGC TAAACTAGTAGTGAT USA300HOU_1382 1516349 - 1516233 - | hypothetical protein USA300HOU_1383 1516794 - 1516450 - | hypothetical protein USA300HOU_1384 1517371 - 1516808 - | hypothetical protein USA300HOU_1385 1517714 - 1517364 - | hypothetical protein USA300HOU_1386 1517948 - 1517769 - | hypothetical protein recU 1518254 - 1518880 + | Holliday junction-specific endonuclease TERM 1533 1519912 - 1519901 - g 71 -3 -5.04987 | opp_overlap 1519901, overlap 1519890 AAGATGTTCAAAAAA CATT ACAA AATG ATGTTGATAATGGTA pbp2 1518877 - 1521060 + | penicillin-binding protein 2 TERM 1534 1521117 - 1521072 - T 78 -9.9 -3.1085 | opp_overlap 1521077, overlap 1521077 CTAATCCACTCAACA TAAAATCCTCAGTTATACCAT ATTT ATGGTGTAGCCGAGGATTTTT TTAGGTTCTTCATCT TERM 1535 1521077 - 1521112 + T 100 -12 -5.57054 | opp_overlap 1521072 1521077 CCACTCAACATAAAA TCCTCAGTTATACCAT ATTT ATGGTGTAGCCGAGGA TTTTTTTAGGTTCTT TERM 1536 1521112 - 1521077 - T 100 -9.8 -4.68724 | opp_overlap 1521077, overlap 1521072 CCACTCAACATAAAA TCCTCAGTTATACCAT ATTT ATGGTGTAGCCGAGGA TTTTTTTAGGTTCTT TERM 1537 1521139 - 1521160 + T 82 -4.4 -5.65177 | overlap 1521142 TCTTCATCTTTTATG GTGGGAAG GTAAAA CTTCCTGC TTTTTTTATAAGTAT USA300HOU_1389 1521967 - 1521626 - | hypothetical protein nth 1522631 - 1521972 - | DNA-(apurinic or apyrimidinic site) lyase dnaD1 1523307 - 1522621 - | DNA replication protein DnaD TERM 1538 1523557 - 1523591 + r 79 -5.1 -5.22006 | gap 1, opp_overlap 1523560, overlap 1523560 TCATTTTCCAAGAAT AAATCGCCCAG-CTAT TAAT ATAGGCTGGACGATTC TTTTTATTATCATAA TERM 1539 1523588 - 1523560 - R 88 -9 -4.44667 | gap 1, opp_overlap 1523557 1523560 TTTTCCAAGAATAAA TCGCCCAG-CTAT TAAT ATAGGCTGGACGA TTCTTTTTATTATCA TERM 1540 1523560 - 1523588 + r 78 -6.8 -4.68512 | gap 1, opp_overlap 1523560, overlap 1523557 TTTTCCAAGAATAAA TCGCCCAG-CTAT TAAT ATAGGCTGGACGA TTCTTTTTATTATCA asnS 1524927 - 1523635 - | asparaginyl-tRNA synthetase TERM 1541 1525196 - 1525234 + r 71 -4.7 -4.68919 | opp_overlap 1525196, overlap 1525186 ACGACCAAACAAAAA TTCTTGTAACAGAACAT AGCAC ATGTCATGTCACAAGAA TTTTACTTTGTATTT TERM 1542 1525234 - 1525196 - R 100 -9.8 -5.34309 | opp_overlap 1525196 1525186 ACGACCAAACAAAAA TTCTTGTAACAGAACATA GCA CATGTCATGTCACAAGAA TTTTACTTTGTATTT dnaQ 1527942 - 1525249 - | DNA-directed DNA polymerase III epsilon subunit TERM 1543 1526541 - 1526523 - G 86 -10.4 -3.62539 | overlap 1526519 TACCAATCAAACCAA GCTGATAT TTA ATATCAGC ATAACTCAACTCATT birA 1528937 - 1527966 - | bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon transcriptional regulator pcnB 1530126 - 1528924 - | tRNA CCA-pyrophosphorylase TERM 1544 1530153 - 1530165 + r 71 -3.4 -5.19212 | CCTTTACTTTTGTTA TGCT CATTT AGCA TTTTTTGATAATAAT USA300HOU_1396 1531285 - 1530131 - | glycosyltransferase USA300HOU_1397 1531831 - 1531514 - | hypothetical protein TERM 1545 1532126 - 1532096 - R 95 -6.3 -5.73339 | gap 1, opp_overlap 1532096 ATAAGCACAAAAAAA CTAGC-AACCACAC AAAA ATGTGATTAGCTAG TTAATAAGTGTCTAA USA300HOU_1398 1532875 - 1532168 - | hypothetical protein USA300HOU_1399 1533507 - 1532920 - | hypothetical protein USA300HOU_1400 1534072 - 1533497 - | hypothetical protein TERM 1546 1533903 - 1533863 - G 70 -7 -3.73953 | gap 1, opp_overlap 1533868, overlap 1533868 ATTACGCTTAGTAAA TTGAA-TTGCAGAAGCGTG ACTT CCCACTTCTGCAATTTCTA ATGTTTCATGATGAT TERM 1547 1533868 - 1533897 + g 89 -9.3 -4.11033 | opp_overlap 1533863 1533868 GCTTAGTAAATTGAA TTGCAGAAGCGTG ACTT CCCACTTCTGCAA TTTCTAATGTTTCAT TERM 1548 1533897 - 1533868 - G 87 -11.5 -3.30701 | opp_overlap 1533868, overlap 1533863 GCTTAGTAAATTGAA TTGCAGAAGCGTG ACTT CCCACTTCTGCAA TTTCTAATGTTTCAT USA300HOU_1401 1535330 - 1534086 - | hypothetical protein aroA 1536635 - 1535337 - | 3-phosphoshikimate 1-carboxyvinyltransferase aroB 1537709 - 1536645 - | 3-dehydroquinate synthase TERM 1549 1537421 - 1537435 + g 71 -8.6 -3.0644 | opp_overlap 1537421, overlap 1537423 TTGCACCACCACCAA CAGCAA TAA TTGCTG TATTACGAGTTACAT TERM 1550 1537435 - 1537421 - G 73 -8.6 -3.23216 | opp_overlap 1537421 1537423 TTGCACCACCACCAA CAGCAA TAA TTGCTG TATTACGAGTTACAT aroC 1538901 - 1537735 - | chorismate synthase TERM 1551 1538622 - 1538642 + g 88 -6.9 -4.85599 | CACGTTCTTCTTCAC TTATTGGAG CTG CTCCCATAA TTTTTCTCCAATGCG USA300HOU_1405 1539487 - 1539287 - | hypothetical protein TERM 1552 1539652 - 1539604 - R 74 -2 -5.5208 | gap 2, overlap 1539605 CTACAACATAAAAAA CGGGCCTTGTTATGT-A-TAATCA TAA TGACTAACCACATAACAAAACCCT TTCTACCTTTATAAA TERM 1553 1539732 - 1539708 - R 79 -9.3 -3.52102 | ATTTTATTCATATAA CCATGCATCAC GTG GTGAAGCATAG CTAGTAATTTCATTT ndk 1540145 - 1539696 - | nucleoside-diphosphate kinase TERM 1554 1540012 - 1540032 + g 75 -9.7 -2.70525 | opp_overlap 1540016, overlap 1540011 1540008 CCATAATGTGTTTCA GCAAGTTCC ATT GGTACTTGC ATTAATTTACCACCG gerC 1541196 - 1540237 - | trans-hexaprenyltranstransferase subunit II USA300HOU_1408 1541923 - 1541198 - | ubiquinone/menaquinone biosynthesis methyltransferase USA300HOU_1409 1542498 - 1541926 - | hypothetical protein TERM 1555 1542921 - 1542895 - R 100 -12.5 -4.70319 | opp_overlap 1542901, overlap 1542901 GTATTAAAAGCAAAA TAAAAAGCCCT TATTC AGGGCTTTTTA AGTAAAATTATTTTA TERM 1556 1542915 - 1542901 - R 90 -7.1 -5.56372 | opp_overlap 1542901, overlap 1542895 AAAGCAAAATAAAAA GCCCT TATTC AGGGC TTTTTAAGTAAAATT TERM 1557 1542901 - 1542915 + r 81 -7.1 -4.67011 | opp_overlap 1542901 1542895 AAAGCAAAATAAAAA GCCCT TATTC AGGGC TTTTTAAGTAAAATT hu 1543201 - 1542929 - | DNA-binding protein HU TERM 1558 1543131 - 1543141 + g 80 -6.8 -4.72473 | opp_overlap 1543120 AATACAGCATCTACT GCTG AAC CAGC TTCTTTTTTAGTTAA TERM 1559 1543354 - 1543369 + r 78 -6.2 -4.70613 | ATTATTAGCCGTATA TGTGTA ATAA TACACA TTTTATTCAGATTTT gpsA 1544370 - 1543372 - | glycerol-3-phosphate dehydrogenase (NAD(+)) TERM 1560 1544215 - 1544227 + g 83 -4.9 -5.42975 | AACATCTAATTTCGC GTATT TTA AATAC TTTTTATTTGTATGA engA 1545697 - 1544387 - | GTP-binding protein EngA TERM 1561 1545675 - 1545643 - G 72 -4.9 -4.7373 | opp_overlap 1545673 CTATTCTATTAAAAA TTGTAGATTTACCTA CAT TAGGCCTACCTACAA TAGCTACTATAGGTT TERM 1562 1545901 - 1545870 - R 74 -5.2 -4.96848 | opp_overlap 1545872, overlap 1545872 TTTGTTACATAAAAA TACTCCACATGC AATCATAA ACATGTGGAGTT GACTATTAAATATTA TERM 1563 1545899 - 1545872 - R 77 -7.8 -4.11141 | opp_overlap 1545872, overlap 1545870 TGTTACATAAAAATA CTCCACATGC AATCATAA ACATGTGGAG TTGACTATTAAATAT rpsA 1547094 - 1545919 - | 30S ribosomal protein S1 TERM 1564 1547283 - 1547296 + r 76 -3.9 -5.36441 | AGTAATACAGTTTGC TATGT TTAT ACATA TTTTTTGTATAAAAA TERM 1565 1547721 - 1547676 - R 85 -7.9 -4.73388 | overlap 1547682 AACTTTTACCAAAAA TAAAAAGGCAACTTTCATTCA TCAT TGAATAAAAATCACCTTTTAA TTTGAGTAAATCATT TERM 1566 1547715 - 1547682 - R 90 -6.9 -5.65496 | overlap 1547676 TACCAAAAATAAAAA GGCAACTTTCATTCA TCAT TGAATAAAAATCACC TTTTAATTTGAGTAA USA300HOU_1414 1547775 - 1547659 - | hypothetical protein cmk 1548465 - 1547806 - | cytidylate kinase aspG 1548542 - 1549510 + | asparaginase USA300HOU_1417 1550611 - 1549625 - | pyridine nucleotide-disulphide dehydrogenase TERM 1567 1550525 - 1550536 + g 82 -4.4 -5.55001 | opp_overlap 1550525 CTTTTCAATAATTAA GGTA TCAA TACC TTTTCTTTTTTGTTC USA300HOU_1418 1550888 - 1550772 - | hypothetical protein ebpS 1552473 - 1551013 - | elastin-binding protein recQ2 1554005 - 1552626 - | ATP-dependent helicase RecQ USA300HOU_1421 1554948 - 1553995 - | hypothetical protein TERM 1568 1554298 - 1554320 + g 72 -5 -4.7373 | opp_overlap 1554301, overlap 1554316 AATATAAGTTTGATT TAATAATGTA GGT TTCATTATTA TTTTTGATAAAATAG TERM 1569 1554542 - 1554556 + g 70 -3.6 -4.97158 | opp_overlap 1554543, overlap 1554537 1554543 AGTTCATTTTCAAAA TCAATT TGT AATTGG TTTTCTTTAATGTAG fer 1555056 - 1555304 + | ferredoxin TERM 1570 1555370 - 1555337 - T 72 -4.7 -4.96848 | gap 1 TGTTCTATAGAAAAA GCAGGCAAGCTATC GTTTATT GATAG-TCACCTGC TTTTTATTATTATGT USA300HOU_1423 1555955 - 1555410 - | hypothetical protein USA300HOU_1424 1556353 - 1556234 - | hypothetical protein USA300HOU_1425 1557466 - 1556552 - | lipoprotein TERM 1571 1557366 - 1557376 + g 82 -5.4 -5.24515 | GAAGCATCCATTTCT TCTG GTA CAGA TTTTGTTTCTTTGTT USA300HOU_1426 1557687 - 1557481 - | hypothetical protein USA300HOU_1427 1558618 - 1557680 - | lipoprotein USA300HOU_1428 1559592 - 1558675 - | lipoprotein TERM 1572 1559668 - 1559640 - R 100 -11.9 -4.58395 | opp_overlap 1559639 1559640 TTTATGTTTGAAAAA GCTACTTATTCTC AAT GAAAACAAGTAGC ATTTAATAAATTAAT TERM 1573 1560050 - 1560025 - R 100 -12 -5.00616 | opp_overlap 1560031 TTTGCCCTGAAAAAA TAACCACGTC AATTAA GACGTGGTTA CCCTAATATAGAAAG lukF-PV 1561094 - 1560117 - | Panton-Valentine leukocidin subunit F lukS-PV 1562034 - 1561096 - | Panton-Valentine leukocidin subunit S TERM 1574 1562235 - 1562179 - R 85 -5.5 -5.42259 | opp_overlap 1562195 1562200, overlap 1562180 1562181 TTATTTCGAAAAAAA CCCGTTCATTACCAAACAAATTATAAA TAA TTTATATTTTGATTGATAATAAACATA AAACCACGATATAGT TERM 1575 1562233 - 1562181 - R 79 -10.3 -2.90056 | opp_overlap 1562195 1562200, overlap 1562180 1562179 ATTTCGAAAAAAACC CGTTCATTACCAAACAAATTATAAA TAA TTTATATTTTGATTGATAATAAACA TAAAACCACGATATA TERM 1576 1562403 - 1562378 - R 100 -12.7 -3.97019 | opp_overlap 1562375 ATTAATTTTAAATAA TAGGCAAGTAC CGAA GTACCTGCCTA AGATTCATCATATAC USA300HOU_1432 1563878 - 1562424 - | bacteriophage amidase TERM 1577 1562939 - 1562953 + g 93 -10 -4.11585 | TTAGTAAATCGTTAC GAGGTG TTA CACCTC TTATTTGTCCTAAAT USA300HOU_1433 1564191 - 1563889 - | holin TERM 1578 1564240 - 1564221 - R 100 -10 -5.48213 | opp_overlap 1564219 1564221 TATCCAAAATAAAAA GCCAGTGC CGAA GCACTGAC TCTTAAATATTACTT USA300HOU_1434 1564626 - 1564327 - | hypothetical protein USA300HOU_1435 1565218 - 1564829 - | hypothetical protein TERM 1579 1565029 - 1565041 + g 71 -3.4 -5.20333 | CACTGTCAATCTGTT GATG CAAGT CATC TTTTTCTTCTGAATA USA300HOU_1436 1566684 - 1565218 - | hypothetical protein TERM 1580 1566599 - 1566573 - G 84 -8.1 -4.50988 | TGATATTAAAAAGAA GAACAGAAGAA TCACT CTCTCCTGTTC TAAAAGTTATATCTA USA300HOU_1437 1568594 - 1566684 - | hypothetical protein TERM 1581 1567760 - 1567771 + g 77 -3 -5.43329 | TTCTAGGTCTCTCAA TTCT GTAT AGAA TTTTATTTTCTTTTT USA300HOU_1438 1568900 - 1568610 - | hypothetical protein USA300HOU_1439 1570483 - 1568900 - | hypothetical protein USA300HOU_1440 1571316 - 1570492 - | hypothetical protein TERM 1582 1571169 - 1571150 - G 100 -9.3 -4.92777 | AATACTAATGAAAAA GGCGCAA AACTAA TTGCGCC CGGTAAAATACCATC USA300HOU_1441 1577516 - 1571316 - | bacteriophage tail protein TERM 1583 1574490 - 1574501 + g 70 -2.2 -5.26875 | TTTGATTTTCTGATT GAGT TCTT GCTC TTTTTTAATTCGCAA TERM 1584 1576759 - 1576769 + g 71 -6.8 -4.11484 | opp_overlap 1576757 1576759 TTTTCTTTATTAACA GCTG TTT CAGC TTTTGCGACATTAGC USA300HOU_1442 1577688 - 1577530 - | hypothetical protein USA300HOU_1443 1578080 - 1577730 - | hypothetical protein TERM 1585 1577767 - 1577783 + g 70 -7.3 -3.82084 | TTTCCCATCTCTTCT GGTTCAG TTT CTGAATC TTCTTCATCTTCACC TERM 1586 1578129 - 1578111 - R 95 -8.1 -5.65927 | opp_overlap 1578111 TATTCAAATAAAAAA GACGCAG ATATA CTGCGCC TTAAATCCCTATCCG USA300HOU_1444 1578593 - 1578138 - | major tail protein USA300HOU_1445 1579326 - 1578685 - | major tail protein TERM 1587 1579373 - 1579355 - R 77 -4.5 -5.18355 | CTTAAAAATTAAAAA GCACACC TATTC GATGCGC TGATTTTTATAATAT USA300HOU_1446 1579756 - 1579361 - | hypothetical protein TERM 1588 1579471 - 1579452 - G 75 -7.2 -4.17048 | opp_overlap 1579452 GTTTCTTCAAAATAA GCATCTAA CTGA CTAGATGC TTGAATTAAATTTTG USA300HOU_1447 1580158 - 1579757 - | hypothetical protein USA300HOU_1448 1580487 - 1580155 - | hypothetical protein USA300HOU_1449 1580777 - 1580499 - | DNA packaging protein USA300HOU_1450 1582054 - 1580846 - | bacteriophage capsid protein USA300HOU_1451 1582794 - 1582021 - | bacteriophage protease TERM 1589 1582487 - 1582466 - GR 79 -4.6 -5.2189 | overlap 1582485 TGAATCATTAAAAAA CTATTTTT GTGCAT AAAAATAG TGTCACCACTCATAG TERM 1590 1582513 - 1582485 - GR 100 -9.7 -4.82901 | overlap 1582466 TTTTGTGCATAAAAA TAGTGTCACCACT CAT AGCGATAACACTA GCAATTGATGCCGCT TERM 1591 1582555 - 1582565 + gr 74 -5.4 -4.67556 | ATAGATATTAATTTT TGCA GGA TGCA TTTTTAGCATATTGT USA300HOU_1452 1584016 - 1582778 - | portal protein USA300HOU_1453 1585712 - 1584021 - | terminase large subunit TERM 1592 1584663 - 1584681 + g 77 -3.2 -5.46629 | opp_overlap 1584667, overlap 1584667 GCCTTCCAGCTCTTC TAAAGAAA CAA TTTCATTA TTTTTTTGGAGTGTT USA300HOU_1454 1586025 - 1585702 - | terminase small subunit TERM 1593 1586501 - 1586479 - R 100 -12 -4.78237 | opp_overlap 1586474 1586479 GATTGCATAACAAAA GACACACCGC ATA GCGATGTGCC TCGTGTACTTGTGTC USA300HOU_1455 1587042 - 1586605 - | bacteriophage transcriptional regulator USA300HOU_1456 1588422 - 1587055 - | helicase USA300HOU_1457 1588693 - 1588403 - | hypothetical protein TERM 1594 1588938 - 1588912 - g 88 -13.2 -3.14344 | overlap 1588929 CATTTGTTGCATCAA TGTTGCATCACT AAA AATGATGCAACA CCTACGATTACTTTT USA300HOU_1458 1588888 - 1589010 + | hypothetical protein USA300HOU_1459 1591481 - 1589034 - | hypothetical protein TERM 1595 1590323 - 1590343 + g 74 -9.1 -3.02186 | opp_overlap 1590322, overlap 1590320 TATTTGGGATACTAG CTTTGAAAG TAC CTTTCGAAG TAATTTCTAACGTCT TERM 1596 1591748 - 1591767 + r 86 -9.2 -3.9373 | overlap 1591743 1591744 CTTCTTTTAATCCTG GAGAGGGC TTTA GCCCCCTC TTTAGCTTTTGAATC USA300HOU_1460 1591969 - 1591769 - | hypothetical protein USA300HOU_1461 1592189 - 1592037 - | bacteriophage transcriptional regulator USA300HOU_1462 1592572 - 1592186 - | hypothetical protein USA300HOU_1463 1592801 - 1592565 - | hypothetical protein USA300HOU_1464 1592997 - 1592794 - | hypothetical protein USA300HOU_1465 1593200 - 1592994 - | hypothetical protein USA300HOU_1466 1593773 - 1593237 - | hypothetical protein USA300HOU_1467 1594023 - 1593766 - | hypothetical protein USA300HOU_1468 1594292 - 1594029 - | hypothetical protein USA300HOU_1469 1594486 - 1594286 - | hypothetical protein USA300HOU_1470 1594746 - 1594489 - | hypothetical protein USA300HOU_1471 1595147 - 1594746 - | hypothetical protein USA300HOU_1472 1595332 - 1595147 - | hypothetical protein USA300HOU_1473 1597297 - 1595345 - | bacterophage DNA-directed DNA polymerase TERM 1597 1597356 - 1597339 - R 89 -9.1 -4.19735 | opp_overlap 1597338 1597336 1597339 TTCTTTAAAATTAAA GTGGGGC TAAA ACCCCAC CTATTGACTTATAAG USA300HOU_1474 1597922 - 1597365 - | hypothetical protein USA300HOU_1475 1599114 - 1597948 - | hypothetical protein USA300HOU_1476 1599473 - 1599111 - | hypothetical protein USA300HOU_1477 1599747 - 1599487 - | hypothetical protein USA300HOU_1478 1600054 - 1599752 - | hypothetical protein USA300HOU_1479 1600364 - 1600047 - | hypothetical protein TERM 1598 1600197 - 1600180 - G 73 -7.1 -4.07568 | opp_overlap 1600178 1600175 1600180 CTTTCTTCCGCAAAA TACTTAC CTCT GTAAGTA TCTTCTTCTTTATCT TERM 1599 1600426 - 1600451 + r 100 -9.1 -5.95946 | GATAAATGTTTGTCA CTGTTACTTGT TGAC GCAAGTAGCAG TTTTTTTATTCTTCA USA300HOU_1481 1600893 - 1600630 - | hypothetical protein USA300HOU_1482 1601133 - 1600918 - | hypothetical protein USA300HOU_1483 1601180 - 1601419 + | hypothetical protein USA300HOU_1484 1601592 - 1601416 - | hypothetical protein USA300HOU_1485 1601867 - 1601676 - | bacteriophage transcriptional regulator USA300HOU_1486 1602028 - 1602357 + | bacteriophage transcriptional regulator USA300HOU_1487 1602370 - 1602831 + | hypothetical protein USA300HOU_1488 1602849 - 1603283 + | lipoprotein TERM 1600 1603796 - 1603779 - T 95 -7.7 -5.62552 | opp_overlap 1603779 AAAAAAATCAAAAAA CGCCTAC TAGT GTAGACG TTGAATGGTGGTGAG USA300HOU_1489 1604554 - 1603940 - | hypothetical protein TERM 1601 1604606 - 1604588 - H 73 -9 -3.20322 | opp_overlap 1604592, overlap 1604586 1604584 TTTTATTATAACACA TTTAGTAC CTA GTACTAAA TTACGGGTAGCCCGA TERM 1602 1604608 - 1604630 + H 78 -6.3 -4.71318 | opp_overlap 1604584 1604607 1604610, overlap 1604611 TACCTAGTACTAAAT TACGGGTAG CCCGA CTACCCTTA TTATTTTTTAATATT TERM 1603 1604611 - 1604627 + H 82 -8 -4.42047 | opp_overlap 1604610 1604607, overlap 1604608 CTAGTACTAAATTAC GGGTAG CCCGA CTACCC TTATTATTTTTTAAT USA300HOU_1490 1604680 - 1605885 + | integrase USA300HOU_1492 1608876 - 1607947 - | lipoprotein TERM 1604 1608120 - 1608130 + g 73 -4 -5.1356 | CATCTACTGTATTGT CTTT AGT AAAG TTTTTCTTAGTAGAA TERM 1605 1608764 - 1608774 + g 79 -5.4 -5.15682 | GAAGCTTCCATTTCT TCTG GTA CAGA TTTTGTTTCTGTTTT TERM 1606 1609059 - 1609097 + r 74 -9 -3.33671 | opp_overlap 1609059 ACATCAATCAAAAAA CGCATGCTATAAATTAGA GTC TCTAATCAATAACATGCG TTCTGAAATAACTAT TERM 1607 1609097 - 1609059 - R 100 -13.4 -5.31059 | opp_overlap 1609059 ACATCAATCAAAAAA CGCATGCTATAAATTAGA GTC TCTAATCAATAACATGCG TTCTGAAATAACTAT srrB 1610815 - 1609121 - | sensor histidine kinase SrrB TERM 1608 1610839 - 1610806 - G 74 -5.5 -4.78029 | gap 1, opp_overlap 1610806, overlap 1610801 TTAATAAAATTAAAA CTGTCGTC-ACTATTA AAA TAATAGTTAACCACAG TTTAATTACGACACT srrA 1611578 - 1610853 - | response regulator SrrA rluB 1612448 - 1611711 - | ribosomal large subunit pseudouridine synthase B scpA 1613731 - 1612976 - | hypothetical protein USA300HOU_1497 1613799 - 1614305 + | hypothetical protein TERM 1609 1614363 - 1614323 - T 79 -5 -5.1848 | opp_overlap 1614323 1614325 AACCAATTTAAAAAA GCCACAATAGCACA-GAC ATTTTTA GTCATGTG-TATTGTGAC TTTTGAGTTATTGTT xerD 1615270 - 1614383 - | integrase/recombinase XerD TERM 1610 1614552 - 1614563 + g 70 -3.6 -4.93696 | TGGCGTAACGTATGT GGCG TTAA CGTC TTTTTAATGTTTGCC TERM 1611 1615312 - 1615290 - R 100 -10.6 -5.42862 | opp_overlap 1615289 1615288 ACACCTCTAAAAAAA GCGAAGGTTA ATT TAACCTACGC AATTTACTATCCTTT USA300HOU_1499 1615768 - 1615319 - | Fur family transcriptional regulator nudF 1616415 - 1615873 - | ADP-ribose diphosphatase USA300HOU_1501 1616497 - 1617405 + | dehydrogenase TERM 1612 1617428 - 1617472 + T 75 -7.4 -4.06491 | gap 1, overlap 1617431 TTTCAGTAATAAAAA CAGCAGCA-TGAGGCGTTT CATTATAA AAATGCCTTACTGCTGTTG TTTATGTACAATTCG USA300HOU_1502 1617869 - 1617621 - | hypothetical protein USA300HOU_1503 1618640 - 1617885 - | dehydrogenase USA300HOU_1504 1618782 - 1619597 + | pyrroline-5-carboxylate reductase TERM 1613 1619650 - 1619605 - T 75 -4.8 -5.06961 | gap 2, opp_overlap 1619605 1619602 ACCAATAAAAACAAA CCCGCCAA-CACA-TGTATGCA TCAT CGCAAGCACTGTGTTTGACGGG TTATTTTTATAATTT USA300HOU_1505 1620622 - 1619702 - | ribonuclease Z USA300HOU_1506 1620813 - 1620679 - | hypothetical protein TERM 1614 1621802 - 1621792 - g 74 -5.4 -4.66953 | TGAAGATGTTAAAAA GAAC TTT GTTC GTGGTCAATATGGCG USA300HOU_1507 1620935 - 1622419 + | glucose-6-phosphate 1-dehydrogenase USA300HOU_1508 1622622 - 1623515 + | AraC family transcription regulator TERM 1615 1623534 - 1623586 + T 78 -10.2 -2.54803 | opp_overlap 1623534, overlap 1623533 1623531 ATAAAAAACAAAGAA GCCCCCTAATA-TATCTATAGGTC TACAAAT GGCCT-TAGATTCTATTAGGGGGC ATATTAATATGTTAA TERM 1616 1623586 - 1623534 - T 83 -8 -4.61916 | opp_overlap 1623533 1623531 1623534 ATAAAAAACAAAGAA GCCCCCTAATA-TATCTATAGGTC TACAAAT GGCCT-TAGATTCTATTAGGGGGC ATATTAATATGTTAA malA 1625247 - 1623598 - | alpha-D-1,4-glucosidase TERM 1617 1624246 - 1624266 + g 70 -8.2 -3.27544 | CTTGTCATCGTCACC CCACGTCG ATACA CGTCGTGG TTGGTCGTGATTTTC malR 1626282 - 1625263 - | maltose operon transcriptional repressor TERM 1618 1626449 - 1626411 - R 82 -5.4 -5.3658 | ACGATAAAAATAAAA CCTTCATACTGAAATTCA ATC CGAAAATCAATATAAAGG TTTGTATAAATATTA USA300HOU_1511 1626847 - 1626476 - | lactoylglutathione lysase TERM 1619 1627054 - 1627033 - R 85 -4.5 -5.53079 | opp_overlap 1627033 AAAAGATATAAAAAA GGATAGT ATCTTTCA ACTATCC TTTAATCAATATTAT pgd 1628472 - 1627066 - | 6-phosphogluconate dehydrogenase TERM 1620 1628297 - 1628326 + g 73 -4.3 -4.88222 | opp_overlap 1628288 1628299, overlap 1628299 TCTAAAGAATTAACA AATTCTTCCAATG AATA CGTTGGATGAATA TTTTTCCCTTTTGAT TERM 1621 1628299 - 1628324 + g 73 -6.9 -4.04549 | opp_overlap 1628288 1628299, overlap 1628297 TAAAGAATTAACAAA TTCTTCCAATG AATA CGTTGGATGAA TATTTTTCCCTTTTG USA300HOU_1513 1629673 - 1628540 - | M20 family peptidase USA300HOU_1514 1629936 - 1630115 + | hypothetical protein USA300HOU_1515 1631222 - 1630242 - | hypothetical protein TERM 1622 1631066 - 1631054 - G 76 -7.7 -3.94 | opp_overlap 1631053 1631051 CTAATCTTGAAATAA TCGCT TGT AGCGA ATGTACTTTTGTATG USA300HOU_1516 1631673 - 1631236 - | hypothetical protein TERM 1623 1631896 - 1631908 + r 70 -6.3 -4.18443 | opp_overlap 1631895 ACTGCAAAAATGCAT TCAAC CAT GTTGA TTATTGTTCTTTATC bmfBB 1633298 - 1632024 - | dihydrolipoyllysine-residue acetyltransferase USA300HOU_1518 1634294 - 1633311 - | 2-oxoisovalerate dehydrogenase (acylating) beta subunit odpA 1635286 - 1634294 - | pyruvate dehydrogenase (acetyl-transferring) alpha subunit TERM 1624 1634845 - 1634856 + g 73 -4.4 -4.90079 | overlap 1634838 TACCTTCACCAACAG TTGC TGTT GCAA TTTTCTTCTTACCAT TERM 1625 1635039 - 1635029 - G 77 -5.4 -4.86033 | AAACGCTGATAAAAA CGTA TCA TACG CTGAGATACCCATAT lpdA 1636723 - 1635302 - | dihydrolipoamide dehydrogenase recN 1638553 - 1636874 - | DNA repair protein RecN TERM 1626 1637862 - 1637878 + g 74 -5.2 -4.66264 | GTCATATGTGCGTTA TTAAGC GCTAA GCTTAA TTTTTCAGAGTTTTG argR 1639030 - 1638569 - | arginine repressor TERM 1627 1638712 - 1638726 + g 80 -7.2 -4.57073 | CTCCAATAGATTGTG CATTAC CAG GTAATG TTTTTAGAACAAGTA ispA 1640334 - 1639453 - | geranyltranstransferase xseB 1640542 - 1640312 - | exodeoxyribonuclease VII small subunit xseA 1641872 - 1640535 - | exodeoxyribonuclease VII large subunit TERM 1628 1640695 - 1640709 + g 77 -5.8 -4.68612 | ATTGTATTAGTTGGA CTTAAA TTG TTTAAG TTTTCTACTTTATTT nusB 1642278 - 1641889 - | transcription antitermination protein NusB USA300HOU_1527 1642700 - 1642338 - | hypothetical protein accC 1644070 - 1642715 - | acetyl-CoA carboxylase biotin carboxylase subunit accB 1644534 - 1644070 - | biotin carboxyl carrier subunit TERM 1629 1644271 - 1644289 + g 75 -8.2 -3.72078 | opp_overlap 1644271, overlap 1644267 TGGCGATTTGTAAAA TGTACCTA CCA TAGGTGCA TTAATTGTTTTGTGA efp 1645565 - 1645008 - | elongation factor P USA300HOU_1531 1646652 - 1645591 - | M24B family Xaa-Pro dipeptidase USA300HOU_1532 1646757 - 1647338 + | hypothetical protein USA300HOU_1533 1647352 - 1647570 + | hypothetical protein USA300HOU_1534 1648464 - 1647634 - | lipoate--protein ligase A USA300HOU_1535 1648622 - 1649008 + | sulfurtransferase gcvPB 1650845 - 1649373 - | glycine dehydrogenase subunit 2 TERM 1630 1649462 - 1649474 + g 73 -7.7 -3.88559 | TCACAGTTGTATGTG GTGCT TCT AGCAC TTTATCAGGATCATT gcvPA 1652193 - 1650838 - | glycine dehydrogenase subunit 1 gcvT 1653295 - 1652204 - | glycine cleavage system aminomethyltransferase T TERM 1631 1653350 - 1653317 - R 93 -11.9 -3.08211 | opp_overlap 1653323, overlap 1653323 ACCCCCTTAAAATTA TAAAAACAGGATAGC AATC GCTACCCTGTTTATA AATCACCAATTCAGG TERM 1632 1653323 - 1653344 + r 82 -8.7 -3.91897 | opp_overlap 1653317 1653323 TTAAAATTATAAAAA CAGGATAGC AATC GCTACCCTG TTTATAAATCACCAA TERM 1633 1653344 - 1653323 - R 100 -10.9 -5.09245 | opp_overlap 1653323, overlap 1653317 TTAAAATTATAAAAA CAGGATAGC AATC GCTACCCTG TTTATAAATCACCAA aroK 1653978 - 1653454 - | shikimate kinase USA300HOU_1540 1654111 - 1653968 - | hypothetical protein USA300HOU_1541 1654708 - 1654211 - | hypothetical protein USA300HOU_1542 1654925 - 1654626 - | hypothetical protein pulG 1655358 - 1654912 - | hypothetical protein USA300HOU_1544 1655647 - 1655336 - | competence protein ComGC pulF 1656731 - 1655661 - | competence protein ComGB USA300HOU_1546 1657677 - 1656703 - | competence protein ComGA TERM 1634 1657501 - 1657487 - GR 76 -8.6 -3.51934 | overlap 1657485 TGCTGTGTAGAAACA TCAAGC CCA GCTTGA AACTTCATATAAACT TERM 1635 1657683 - 1657712 + r 100 -10.8 -5.1963 | opp_overlap 1657683 GAATCTTCAAAAAAA CACCTCCTACAT ATAATC ACGTAGGAGGTG TTTTTATTACTTCAA TERM 1636 1657712 - 1657683 - R 100 -13.7 -5.43866 | opp_overlap 1657683 GAATCTTCAAAAAAA CACCTCCTACATA TAAT CACGTAGGAGGTG TTTTTATTACTTCAA USA300HOU_1547 1658352 - 1657729 - | metallo-beta-lactamase USA300HOU_1548 1658678 - 1658349 - | hypothetical protein glcK 1659664 - 1658678 - | glucokinase TERM 1637 1659000 - 1658989 - G 77 -5.8 -4.72272 | TTGCCGCATCAAAAA CAGC TTTT GCTG TAACCTTATTTTCTT USA300HOU_1550 1659864 - 1659661 - | hypothetical protein USA300HOU_1551 1661308 - 1659845 - | peptidase USA300HOU_1552 1661859 - 1661320 - | 5-formyltetrahydrofolate cyclo-ligase TERM 1638 1662005 - 1662033 + r 90 -7.5 -5.66229 | opp_overlap 1662005 GTGCATAATTAAAAA GGTGAAACCTC TTATTTT GAGATTTCACC TTTTTTATTGTTAAT TERM 1639 1662033 - 1662005 - R 100 -9.7 -4.93365 | opp_overlap 1662005 GTGCATAATTAAAAA GGTGAAACCTC TTATTTT GAGATTTCACC TTTTTTATTGTTAAT rpmG3 1662217 - 1662068 - | 50S ribosomal protein L33 pbp3 1664405 - 1662330 - | penicillin-binding protein 3 TERM 1640 1662560 - 1662574 + g 73 -8.6 -3.25204 | opp_overlap 1662536, overlap 1662558 1662565 TACCCGTTTTACCAG CAGTAG GTA CTACTG TATCTTTAAAACTAA TERM 1641 1664509 - 1664490 - R 100 -9.3 -4.89054 | TTGACAAAAAAATAA CGGTCTC ATTTAA GAGACCG AACAAGTAATCATAC sodA 1665125 - 1664526 - | superoxide dismutase TERM 1642 1664798 - 1664821 + g 72 -2.5 -5.31275 | opp_overlap 1664793 1664803, overlap 1664799 CTTTTTTAAATTCTT CTAAAGAAC CCCATT GTTCTTTAA TTTTTTCTACTACAG TERM 1643 1665399 - 1665342 - R 100 -15.6 -3.21924 | gap 2, opp_overlap 1665342 1665346 1665350, overlap 1665325 1665346 1665350 TTATCTTCTATAATA TAAAGAAATGAGATTTATGCATACATCT GACC AAATGT--GCATAAATCTCATTTCTTTA TATTAATCTTGGCAA TERM 1644 1665342 - 1665399 + r 100 -15.5 -3.25073 | opp_overlap 1665325 1665342 1665346 1665350, overlap 1665346 1665350 TTATCTTCTATAATA TAAAGAAATGAGATTTATGCATA CATCTGACCAAA TGTGCATAAATCTCATTTCTTTA TATTAATCTTGGCAA TERM 1645 1665346 - 1665395 + r 100 -11.9 -4.27467 | opp_overlap 1665346 1665342 1665350, overlap 1665342 1665350 CTTCTATAATATAAA GAAATGAGATTTATGCATA CATCTGACCAAA TGTGCATAAATCTCATTTC TTTATATTAATCTTG TERM 1646 1665395 - 1665346 - R 100 -12 -4.27117 | gap 2, opp_overlap 1665342 1665346 1665350, overlap 1665342 1665350 CTTCTATAATATAAA GAAATGAGATTTATGCATACATCT GACC AAATGT--GCATAAATCTCATTTC TTTATATTAATCTTG TERM 1647 1665350 - 1665391 + r 80 -6.9 -4.69415 | opp_overlap 1665350 1665346 1665342, overlap 1665346 1665342 TATAATATAAAGAAA TGAGATTTATGCATA CATCTGACCAAA TGTGCATAAATCTCA TTTCTTTATATTAAT TERM 1648 1665391 - 1665350 - R 80 -7 -4.70921 | gap 2, opp_overlap 1665346 1665342 1665350, overlap 1665346 1665342 TATAATATAAAGAAA TGAGATTTATGCATACATCT GACC AAATGT--GCATAAATCTCA TTTCTTTATATTAAT USA300HOU_1556 1665812 - 1665402 - | Fur family transcriptional regulator USA300HOU_1557 1666671 - 1665799 - | ABC transporter ATP-binding protein USA300HOU_1558 1667471 - 1666704 - | ABC transporter ATP-binding protein nfo 1668505 - 1667615 - | endonuclease IV USA300HOU_1560 1669861 - 1668515 - | ATP-dependent RNA helicase TERM 1649 1669975 - 1669928 - R 73 -3.6 -5.28942 | opp_overlap 1669931 1669937 1669969, overlap 1669930 1669931 1669936 1669937 TATTTTAAATAAAAA TATTAAAACCTCGAAATTTCAA AATT TAGAAATCCCGAGATTTTAGTT TAAATATATTGAAAT TERM 1650 1669973 - 1669930 - R 72 -6.2 -4.27026 | opp_overlap 1669931 1669937 1669969, overlap 1669928 1669931 1669936 1669937 TTTTAAATAAAAATA TTAAAACCTCGAAATTTCAA AATT TAGAAATCCCGAGATTTTAG TTTAAATATATTGAA TERM 1651 1669972 - 1669931 - R 78 -9.7 -3.15131 | opp_overlap 1669931 1669937 1669969, overlap 1669930 1669928 1669936 1669937 TTTAAATAAAAATAT TAAAACCTCGAAATTTCAA AATT TAGAAATCCCGAGATTTTA GTTTAAATATATTGA TERM 1652 1669967 - 1669936 - R 70 -5.2 -4.62102 | opp_overlap 1669931 1669937, overlap 1669931 1669930 1669928 1669937 ATAAAAATATTAAAA CCTCGAAATTTCAA AATT TAGAAATCCCGAGA TTTTAGTTTAAATAT USA300HOU_1561 1671075 - 1669975 - | hypothetical protein USA300HOU_1562 1671755 - 1671078 - | hypothetical protein TERM 1653 1671808 - 1671778 - R 93 -8.5 -5.14563 | gap 1 TCCTTTATGAAAAAA GAGGTTGA-ACATT ATTC AATGTACCAACCTC ACTCAAGTTAAATCT rpoD 1672992 - 1671886 - | RNA polymerase sigma factor RpoD dnaG 1675015 - 1673216 - | DNA primase TERM 1654 1674272 - 1674284 + g 84 -6.3 -5.04249 | opp_overlap 1674272, overlap 1674281 ACGCGCTTTATCTAA GTTGT ATA ACAAC TTTCTTTTTTGAAAG USA300HOU_1565 1675894 - 1675076 - | hypothetical protein TERM 1655 1676787 - 1676837 + H 100 -13 -4.39166 | gap 2, opp_overlap 1676786 1676799 1676804 TTTAAAATATTAACT CGTCCCATGGAA-GTAA-AGCATA TTTAC TATGCTGTTATTTTCCATGGGGCG TTTTCATGTATGAGG glyS 1676863 - 1678254 + | glycyl-tRNA synthetase TERM 1656 1678333 - 1678302 - T 77 -6 -4.93318 | opp_overlap 1678297 1678302 TATAATTTATAAAAA GAGATACTGG TTAGTAAAATTG CCAGTATCTC TTTTCTATTCAAAAA TERM 1657 1678302 - 1678333 + T 85 -8.2 -4.66537 | gap 1, opp_overlap 1678302, overlap 1678297 TATAATTTATAAAAA GAGATACTGGTTAGT AAA ATTG-CCAGTATCTC TTTTCTATTCAAAAA TERM 1658 1678344 - 1678393 + T 85 -8.1 -4.47977 | opp_overlap 1678349, overlap 1678349 ATCTCTTTTCTATTC AAAAAGGTATTCAAATAAACACA TCTA TGTGGCTACTTGAATACCTTTTA TTATTTTATGTTATT TERM 1659 1678388 - 1678349 - T 100 -12.4 -4.65895 | opp_overlap 1678349 1678344 TTTTCTATTCAAAAA GGTATTCAAATAAACACA TCTA TGTGGCTACTTGAATACC TTTTATTATTTTATG TERM 1660 1678349 - 1678388 + T 90 -8 -5.12916 | opp_overlap 1678349, overlap 1678344 TTTTCTATTCAAAAA GGTATTCAAATAAACACA TCTA TGTGGCTACTTGAATACC TTTTATTATTTTATG recO 1679156 - 1678404 - | recombination protein RecO era 1680077 - 1679178 - | GTP-binding protein Era cdd 1680482 - 1680078 - | cytidine deaminase dgkA2 1680837 - 1680493 - | diacylglycerol kinase USA300HOU_1571 1681307 - 1680840 - | hypothetical protein phoH 1682255 - 1681308 - | phosphate starvation-inducible protein PhoH TERM 1661 1681750 - 1681766 + g 72 -8 -3.44552 | AATCCAAGTGACTCT CCTGCT TCAAC AGCAGG TCTTGTTAATACAAT TERM 1662 1682545 - 1682518 - R 90 -6.4 -5.53288 | gap 1, opp_overlap 1682518 CTTAACGTAAAAAAA CAAGCAACTACCA TTA CGATAGT-GCTTG TTTTCAAAAAATTTT USA300HOU_1573 1683257 - 1682559 - | hypothetical protein USA300HOU_1574 1684263 - 1683274 - | hypothetical protein USA300HOU_1575 1684988 - 1684281 - | hypothetical protein TERM 1663 1684928 - 1684892 - G 83 -6.9 -4.76892 | gap 1, overlap 1684894 ATATTAACGTAAAAA TAGGTTGAACAA-TTA TATTGC TAACTTGTTCAACCCA AGTATCTCCAGCCGT TERM 1664 1684926 - 1684894 - G 73 -7.3 -3.99461 | gap 1, overlap 1684892 ATTAACGTAAAAATA GGTTGAACAA-TTA TATTGC TAACTTGTTCAACC CAAGTATCTCCAGCC TERM 1665 1685156 - 1685122 - R 100 -13.8 -5.88565 | opp_overlap 1685122 TTGACAACAAAAAAA CATCACATATTAGTGT CAG ACACTAACTTGTGATG TTTGTTTTATATAAT TERM 1666 1685122 - 1685156 + r 100 -11.6 -4.84146 | opp_overlap 1685122 TTGACAACAAAAAAA CATCACATATTAGTGT CAG ACACTAACTTGTGATG TTTGTTTTATATAAT rpsU 1685384 - 1685208 - | 30S ribosomal protein S21 TERM 1667 1685481 - 1685494 + r 81 -3.9 -5.63517 | opp_overlap 1685493 TCTGTAATTTATGGT CAATT AGTA AATTG TTTTTTATTTGAAAC TERM 1668 1685558 - 1685533 - R 70 -5.6 -4.22407 | opp_overlap 1685521 1685533 CATCAAAATCACAAA GACTTTTAGA TTTTGT TCTAAAAATC TCTTAATAATTTATT USA300HOU_1577 1687023 - 1685677 - | hypothetical protein USA300HOU_1578 1687791 - 1687030 - | hypothetical protein TERM 1669 1687756 - 1687739 - G 100 -7.7 -5.7946 | opp_overlap 1687739 TTTGTAATAAAAAAA CGCTGAC TTAC ATCAGCG TTTTGGTCTATGAAA TERM 1670 1687739 - 1687756 + g 78 -7 -4.39166 | opp_overlap 1687739 TTTGTAATAAAAAAA CGCTGA CTTACA TCAGCG TTTTGGTCTATGAAA prmA 1688722 - 1687784 - | ribosomal protein L11 methyltransferase TERM 1671 1687986 - 1688005 + g 70 -2.2 -5.22289 | opp_overlap 1687986 ATATGCGCTAAAATA TTTGCTAT TACA ATATCAAA TTTTTCTGTTTCGTC TERM 1672 1688369 - 1688393 + g 81 -8 -4.11692 | opp_overlap 1688373 CTTCGACGCTCGGAA TGGATGGAAA TAGTT TTTCCATTCA TTTTCCCAATCCGTC dnaJ 1689865 - 1688726 - | chaperone DnaJ TERM 1673 1689968 - 1689928 - R 100 -12.2 -3.70149 | opp_overlap 1689934, overlap 1689934 GTCATACTATCCAAA TAAAAAGCCAAAGCCAAT GTTCT ATTGACTTTGACTTTTCA GATCATGACAACATT TERM 1674 1689962 - 1689934 - R 100 -9 -5.30616 | opp_overlap 1689934, overlap 1689928 CTATCCAAATAAAAA GCCAAAGCCAAT GTTCT ATTGACTTTGAC TTTTCAGATCATGAC dnaK 1691833 - 1690001 - | chaperone DnaK grpE 1692528 - 1691902 - | chaperone GrpE hrcA 1693537 - 1692560 - | heat shock transcriptional repressor HrcA TERM 1675 1692612 - 1692634 + g 71 -6.3 -4.25074 | TAATGCATAGCTGTA GGTCCAATC ACAGC GATTTGACC TTTTAACGTTTCATC hemN 1694794 - 1693637 - | coproporphyrinogen III oxidase TERM 1676 1695020 - 1694998 - R 81 -5.6 -5.26119 | overlap 1694999 1695001 TCCTTAAAAATAAAA TTACATGAGT AAA ACTCATGCAT AAGGGAGTGGGACAG TERM 1677 1695019 - 1694999 - R 84 -9.1 -3.74587 | overlap 1694998 1695001 CCTTAAAAATAAAAT TACATGAGT AAA ACTCATGCA TAAGGGAGTGGGACA TERM 1678 1695017 - 1695001 - R 79 -9.5 -3.43674 | overlap 1694999 1694998 TTAAAAATAAAATTA CATGAGT AAA ACTCATG CATAAGGGAGTGGGA USA300HOU_1585 1695141 - 1695013 - | hypothetical protein TERM 1679 1695152 - 1695168 + r 72 -8 -3.68024 | opp_overlap 1695152 TGCACATTATAGTAA GCTGAC TTTTC GTCAGC TTCTGTGTTGGGGCC lepA 1697147 - 1695324 - | GTP-binding protein LepA TERM 1680 1695497 - 1695511 + g 72 -2.9 -5.36965 | CCATTGATTTAATAT TTGTA CGCGC TACAA TTTTTTGTCCTATTG TERM 1681 1697339 - 1697355 + H 81 -8.1 -4.23213 | opp_overlap 1697335 TATAAAACGTATTGA TTGTGTT TCC AACACAA TTTATTAAATCTGCA rpsT 1697493 - 1697744 + | 30S ribosomal protein S20 TERM 1682 1697755 - 1697784 + T 100 -15.3 -5.252 | opp_overlap 1697755 1697760, overlap 1697760 AATAATCTTTTTAAA TAAAAGTTCAAGC GCAT GCTTGAACTTTTA TTTTTTATAAAGATA TERM 1683 1697784 - 1697755 - T 100 -15.3 -3.56366 | opp_overlap 1697755 1697760, overlap 1697760 AATAATCTTTTTAAA TAAAAGTTCAAGC GCAT GCTTGAACTTTTA TTTTTTATAAAGATA TERM 1684 1697760 - 1697779 + T 100 -10.8 -5.49579 | opp_overlap 1697755 1697760, overlap 1697755 TCTTTTTAAATAAAA GTTCAAGC GCAT GCTTGAAC TTTTATTTTTTATAA TERM 1685 1697779 - 1697760 - T 100 -10.8 -4.86731 | opp_overlap 1697760 1697755, overlap 1697755 TCTTTTTAAATAAAA GTTCAAGC GCAT GCTTGAAC TTTTATTTTTTATAA holA 1698763 - 1697789 - | DNA polymerase III subunit delta TERM 1686 1698552 - 1698571 + g 76 -3.6 -5.36441 | opp_overlap 1698552, overlap 1698568 CCTGTAAATATATAT GCATTTTT AACC AAAATTGC TTTTTTATCTGAAAA comEC 1701021 - 1698820 - | competence protein ComEC TERM 1687 1700709 - 1700687 - G 76 -6.5 -4.54727 | TTCTTTAAATCAAAA TTCTTTTTA TCTGT TAAAAAGAA AGGATATATTTCATT TERM 1688 1700995 - 1700956 - G 73 -4.5 -4.86613 | gap 1 TAAAATGAAAAGAAA TGTAGAGAGCACTTTG CTAGAATTC CAAAGCACTC-CTACA ATCATTGATAACGCG comEB 1701496 - 1701026 - | competence protein ComEB comEA 1702265 - 1701579 - | competence protein comEA TERM 1689 1702256 - 1702302 + g 79 -4 -5.42198 | gap 2, opp_overlap 1702257 1702262, overlap 1702257 ATAAAAATTGATACA ATAAAACCACTC-CTCA-ACTT TATAC ACGTCTGAGCGAGTGGTTTTAC TTTTATTTTTTCGCA TERM 1690 1702257 - 1702301 + g 73 -7.5 -3.83692 | gap 2, opp_overlap 1702257 1702262, overlap 1702256 TAAAAATTGATACAA TAAAACCACTC-CTCA-ACTT TATAC ACGTCTGAGCGAGTGGTTTTA CTTTTATTTTTTCGC TERM 1691 1702301 - 1702257 - G 71 -7.5 -3.61591 | gap 2, opp_overlap 1702256 1702257, overlap 1702262 TAAAAATTGATACAA TAAAACCACTC-CTCA-ACTT TATAC ACGTCTGAGCGAGTGGTTTTA CTTTTATTTTTTCGC USA300HOU_1592 1703021 - 1702305 - | hypothetical protein USA300HOU_1593 1703377 - 1703024 - | hypothetical protein USA300HOU_1594 1703962 - 1703378 - | hypothetical protein nadD 1704521 - 1703952 - | nicotinate-nucleotide adenylyltransferase USA300HOU_1596 1704814 - 1704524 - | hypothetical protein aroE 1705624 - 1704818 - | shikimate 5-dehydrogenase USA300HOU_1598 1706738 - 1705638 - | GTP-binding protein YqeH TERM 1692 1706659 - 1706675 + g 76 -4.4 -5.05037 | overlap 1706660 CGAAACATATTATGC TCTGGT ACAAA ACCAGG TTTATTTTTATCTTC USA300HOU_1599 1707266 - 1706739 - | HAD family phosphatase mtnN/pfs 1707972 - 1707286 - | bifunctional methylthioadenosine nucleosidase/adenosylhomocysteine nucleosidase TERM 1693 1707473 - 1707486 + g 86 -5.3 -5.59502 | ATTTCAACCGCCATC GCATT TGGA AATGC TTTTTTAATTTTTTG USA300HOU_1601 1708179 - 1708018 - | hypothetical protein USA300HOU_1602 1708286 - 1708555 + | hypothetical protein USA300HOU_1603 1709461 - 1708757 - | enterotoxin TERM 1694 1709725 - 1709741 + r 71 -2.3 -5.42605 | opp_overlap 1709722 1709719 AACAGTATATAAGAA AAAATGA TAA TCATTTC TTTTATTTTTATTAA TERM 1695 1709845 - 1709819 - R 81 -5.9 -5.27206 | GATACACAACAAAAA GAGCAGTACAT TTGTC ATGCACCACTC TCAACAAATATATTT USA300HOU_1604 1711143 - 1709923 - | hypothetical protein TERM 1696 1711322 - 1711296 - R 81 -5.9 -5.22006 | TCATCACAACAAAAA GAGCAGTACAT TTGTC ATGCACCACTC TCCCTTAAAATATAT USA300HOU_1605 1713426 - 1712674 - | hypothetical protein USA300HOU_1606 1714787 - 1713426 - | biotin carboxylase USA300HOU_1607 1715250 - 1714801 - | acetyl-CoA carboxylase biotin carboxyl carrier subunit USA300HOU_1608 1716262 - 1715252 - | hypothetical protein TERM 1697 1716097 - 1716077 - G 70 -6.9 -3.72695 | ATTTTGCGTATTAAA TTGAATGGT AGG ACCAATCAA AGTATATTCAATCGC USA300HOU_1609 1716986 - 1716252 - | hypothetical protein TERM 1698 1717190 - 1717227 + r 86 -6.3 -5.46698 | AGGTTCTGCTATCAT TCGGTCTGATGGAAAAT TTTT ACTTTTCATCTGTCCGA TTTTTTGATTTTGAA TERM 1699 1717288 - 1717252 - R 95 -8.1 -5.47159 | TTTGAATATAAAAAA GCACGACCGAAGTAT CATTAAC ACACTTCAATCGCGC AATTAAATAATCTAT greA 1717788 - 1717312 - | transcription elongation factor udk 1718439 - 1717816 - | uridine kinase USA300HOU_1612 1719707 - 1718439 - | U32 family peptidase TERM 1700 1719602 - 1719585 - G 70 -4.1 -4.68593 | TTGACCACCTAAAAA TACGGCA TCAG CGCCATA ATGTACTGCTATTTT USA300HOU_1613 1720648 - 1719719 - | U32 family peptidase USA300HOU_1614 1721283 - 1720645 - | caffeoyl-CoA O-methyltransferase TERM 1701 1721555 - 1721519 - R 70 -3.8 -5.08824 | gap 1, opp_overlap 1721554 GCTTGACTTAAAAAA TACTCTTGCC-TCCCCA TCTT TAAGGTTAGCAAGAGTA AAATCTTTTTAATTA USA300HOU_1615 1721876 - 1721568 - | hypothetical protein USA300HOU_1616 1722319 - 1721891 - | hypothetical protein USA300HOU_1617 1722583 - 1722323 - | hypothetical protein alaS 1725279 - 1722646 - | alanyl-tRNA synthetase TERM 1702 1725421 - 1725397 - R 89 -3.5 -6.04324 | overlap 1725370 TTAAAAAATAAAAAA CGCCCATCC TCAAAAG GGACGAACG TTATCGCGGTACCAC recD 1728096 - 1725619 - | exodeoxyribonuclease V alpha subunit USA300HOU_1620 1728766 - 1728098 - | tetratricopeptide domain-containing protein TERM 1703 1729111 - 1729140 + r 74 -9.3 -2.83641 | opp_overlap 1729107 1729106 1729104, overlap 1729113 CAATATAACATTGTA GAGCCTAGGACAT TGTG ATGTCCCAGACTC TATCCTCATGAATTA trmU 1730346 - 1729228 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase csd1 1731489 - 1730347 - | cysteine desulfurase USA300HOU_1623 1731801 - 1732814 + | dehydrogenase TERM 1704 1733015 - 1732959 - T 100 -18.2 -3.46336 | opp_overlap 1732964 1732977 1732981, overlap 1732964 ATTCTAATGCAAATA TGAAAGCGCCCCTTCAACTTTACACT GTGTA AGTGTTTATTTGATGGGGCGCTTTCA AAATATTGAAAAGCA TERM 1705 1733010 - 1732964 - T 100 -12.3 -4.02206 | opp_overlap 1732964 1732977 1732981, overlap 1732959 AATGCAAATATGAAA GCGCCCCTTCAACTTTACACT GTGTA AGTGTTTATTTGATGGGGCGC TTTCAAAATATTGAA TERM 1706 1732964 - 1733010 + T 100 -12.3 -3.6106 | opp_overlap 1732964 1732959, overlap 1732977 1732981 AATGCAAATATGAAA GCGCCCCTTCAACTTTACACT GTGTA AGTGTTTATTTGATGGGGCGC TTTCAAAATATTGAA USA300HOU_1624 1733197 - 1733051 - | hypothetical protein USA300HOU_1625 1733419 - 1733237 - | hypothetical protein TERM 1707 1733427 - 1733464 + r 85 -10.7 -3.0701 | opp_overlap 1733427 TCTGCCATAGTGAAA CCTCCTTGGATGTATAT ATTT ATATACCACTAAGGAGG TTCGCTAAACATTAT TERM 1708 1733464 - 1733427 - R 77 -8.5 -3.70902 | opp_overlap 1733427 TCTGCCATAGTGAAA CCTCCTTGGATGTATAT ATTT ATATACCACTAAGGAGG TTCGCTAAACATTAT TERM 1709 1735348 - 1735404 + r 72 -8.3 -3.30505 | gap 1, opp_overlap 1735348 1735353, overlap 1735353 TAGCTATAATCAAAT CAAAACTGACTAGTACACGAGGCATA TTCTAC TATGCTT-GCGAACTAGTCAGTTTTA GTTTTATGGTGTGGT TERM 1710 1735404 - 1735348 - R 79 -10.5 -3.00039 | gap 1, opp_overlap 1735348 1735353, overlap 1735353 TAGCTATAATCAAAT CAAAACTGACTAGTACACGAGGCATA TTCTAC TATGCTT-GCGAACTAGTCAGTTTTA GTTTTATGGTGTGGT TERM 1711 1735399 - 1735353 - R 85 -8.2 -4.62957 | gap 1, opp_overlap 1735348 1735353, overlap 1735348 ATAATCAAATCAAAA CTGACTAGTACACGAGGCATA TTCTAC TATGCTT-GCGAACTAGTCAG TTTTAGTTTTATGGT TERM 1712 1735353 - 1735399 + r 87 -8.2 -4.74012 | gap 1, opp_overlap 1735353 1735348, overlap 1735348 ATAATCAAATCAAAA CTGACTAGTACACGAGGCATA TTCTAC TATGCTT-GCGAACTAGTCAG TTTTAGTTTTATGGT USA300HOU_1626 1736234 - 1735461 - | hypothetical protein USA300HOU_1627 1736362 - 1736234 - | hypothetical protein TERM 1713 1736423 - 1736401 - R 100 -15 -4.95896 | overlap 1736391 AGAAACGCATAAAAA TACGCAAGAC AAA GTCTTGCGTA TCGATAGAGTCCGTA aspS 1738461 - 1736695 - | aspartyl-tRNA synthetase hisS 1739739 - 1738477 - | histidyl-tRNA synthetase TERM 1714 1739882 - 1739852 - R 90 -6.8 -5.56372 | overlap 1739840 1739853 1739880 AAAGCAAAAGAAAAA GCCCTTGCACAGCC TGA AACTGCACAAGGGA CGAATATCCGTGTTG TERM 1715 1739881 - 1739853 - R 93 -10.3 -3.90163 | overlap 1739840 1739852 1739880 AAGCAAAAGAAAAAG CCCTTGCACAGCC TGA AACTGCACAAGGG ACGAATATCCGTGTT lytH 1741075 - 1740200 - | N-acetylmuramoyl-L-alanine amidase dtd 1741524 - 1741072 - | D-tyrosyl-tRNA deacylase TERM 1716 1741371 - 1741382 + g 73 -4.4 -4.90525 | CATCTTCAAATAATC TTGC ATTA GCAA TTTTCTTTGCAATTA relA2 1743746 - 1741536 - | GTP pyrophosphokinase TERM 1717 1744070 - 1744050 - R 100 -7.7 -5.68438 | TCAGTAAATAAAAAA TCCTAACAT CTC ATGTTAAGA AAACTTAAACAACTT apt 1744671 - 1744153 - | adenine phosphoribosyltransferase recJ 1746966 - 1744693 - | recombination protein RecJ USA300HOU_1635 1746917 - 1747039 + | hypothetical protein TERM 1718 1747124 - 1747158 + Tr 83 -10.2 -3.54177 | opp_overlap 1747124, overlap 1747120 TAAATAAAGTAAAAA GCGGTATGTGAA CTCTTTATTGT TTCACATACCGC TTAATTCATTTTAAA TERM 1719 1747158 - 1747124 - TR 100 -10.2 -5.13137 | opp_overlap 1747124 1747120 TAAATAAAGTAAAAA GCGGTATGTGAA CTCTTTATTGT TTCACATACCGC TTAATTCATTTTAAA secDF 1749448 - 1747169 - | bifunctional preprotein translocase subunit SecD/SecF TERM 1720 1747718 - 1747730 + g 85 -6.3 -5.2189 | opp_overlap 1747718 CGATGCATAGATTAA TGCAA GCA TTGCA TTTTTTGCTAATTCC TERM 1721 1749703 - 1749679 - R 100 -13 -4.78149 | opp_overlap 1749679 CTTATAACTTAAAAA GGATGAAACG CTATT CGTTTCATCC TTTTTAATACCACTT TERM 1722 1749679 - 1749703 + r 100 -13 -4.73388 | opp_overlap 1749679 CTTATAACTTAAAAA GGATGAAACG CTATT CGTTTCATCC TTTTTAATACCACTT yajC 1749983 - 1749723 - | type I general secretory pathway preprotein translocase subunit YajC tgt 1751141 - 1750002 - | queuine tRNA-ribosyltransferase TERM 1723 1750254 - 1750266 + g 80 -6.3 -4.7497 | CGGTCTTAAATCATC TGCAA ATT TTGCA TTTTTAATAACTAAA queA 1752189 - 1751164 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase ruvB 1753195 - 1752191 - | Holliday junction DNA helicase B ruvA 1753829 - 1753227 - | crossover junction endodeoxyribonuclease USA300HOU_1642 1754298 - 1753843 - | hypothetical protein USA300HOU_1643 1755603 - 1754311 - | GTPase ObgE TERM 1724 1755695 - 1755656 - R 72 -8.8 -2.90382 | gap 1, opp_overlap 1755659, overlap 1755651 1755659 AATAATTATAGCATA TTAGAGCCCCTTATATATT GTA AATA-ATTAGGGGCTCTTA TGCAGTTACTTTTAT TERM 1725 1755692 - 1755659 - R 78 -10.5 -2.69178 | gap 1, opp_overlap 1755659, overlap 1755656 1755651 AATTATAGCATATTA GAGCCCCTTATATATT GTA AATA-ATTAGGGGCTC TTATGCAGTTACTTT TERM 1726 1755659 - 1755692 + r 83 -10.5 -3.3858 | gap 1, opp_overlap 1755656 1755651 1755659 AATTATAGCATATTA GAGCCCCTTATATATT GTA AATA-ATTAGGGGCTC TTATGCAGTTACTTT TERM 1727 1755943 - 1755921 - R 100 -12.1 -5.56112 | opp_overlap 1755921 1755923 ATAAAAAGTAAAAAA CACCAGAAG ATTCA CTTCTGGTG TTAACTAGACAAAAT TERM 1728 1755921 - 1755943 + r 93 -12.1 -3.05463 | opp_overlap 1755921, overlap 1755923 ATAAAAAGTAAAAAA CACCAGAAG ATTCA CTTCTGGTG TTAACTAGACAAAAT TERM 1729 1755923 - 1755941 + r 73 -8.9 -3.08679 | opp_overlap 1755921, overlap 1755921 AAAAAGTAAAAAACA CCAGAAG ATTCA CTTCTGG TGTTAACTAGACAAA rpmA 1756242 - 1755958 - | 50S ribosomal protein L27 TERM 1730 1756145 - 1756161 + g 78 -7.3 -4.41494 | AATTGACCGTCAGCA CGTTTAG CAC CTAAGCG TTTTGATTCAGAGTC USA300HOU_1645 1756574 - 1756254 - | hypothetical protein rplU 1756888 - 1756580 - | 50S ribosomal protein L21 TERM 1731 1757078 - 1757088 + r 75 -4 -5.20328 | overlap 1757059 GACGACGTTTCATGT CAAT GTC ATTG TTTGTTTTTTTAAGG USA300HOU_1647 1757585 - 1757055 - | hypothetical protein mreC 1758427 - 1757585 - | cell shape protein MreC USA300HOU_1649 1758746 - 1758627 - | hypothetical protein USA300HOU_1650 1759293 - 1758820 - | hypothetical protein USA300HOU_1651 1760051 - 1759767 - | hypothetical protein radC 1760790 - 1760119 - | DNA repair protein RadC USA300HOU_1653 1761509 - 1760802 - | A24 family peptidase TERM 1732 1761764 - 1761719 - R 82 -5 -5.34555 | gap 1, opp_overlap 1761736 TTAGAGCATAAAAAA TAACCATGAAG-CTCTACCTA TTGAT TAAATAGATTCTTCATGGCTA TTTTAGTTTTAGTTT folC 1763050 - 1761779 - | tetrahydrofolate synthase valS 1765693 - 1763063 - | valyl-tRNA synthetase TERM 1733 1763604 - 1763622 + g 70 -4.6 -4.67943 | overlap 1763606 ATTGTGTCACCTTCA TGTGGTAA ACT TTGCCATA TTTTCTCTGTTACAA TERM 1734 1765750 - 1765721 - H 100 -10.2 -5.86609 | opp_overlap 1765721 1765723, overlap 1765740 1765745 CTAAAAAAATAAAAA TATCCATCCTAT ATACAA ATAGGACGGATA TTCCGTGGTACCACC tag 1766096 - 1766656 + | 3-methyladenine glycosidase USA300HOU_1657 1767952 - 1766879 - | ammonia monooxygenase USA300HOU_1658 1768087 - 1767986 - | hypothetical protein TERM 1735 1768104 - 1768134 + r 71 -6.8 -3.98204 | opp_overlap 1768108, overlap 1768105 1768108 CCTTATATACATTTA AAAAGAGCCTGAAC AAA GTTCAGGCTCTCAA TTTGTCCGTATATTT TERM 1736 1768105 - 1768133 + r 79 -10.3 -2.97838 | opp_overlap 1768108, overlap 1768104 1768108 CTTATATACATTTAA AAAGAGCCTGAAC AAA GTTCAGGCTCTCA ATTTGTCCGTATATT TERM 1737 1768108 - 1768130 + r 100 -16.4 -2.71593 | opp_overlap 1768108, overlap 1768105 1768104 ATATACATTTAAAAA GAGCCTGAAC AAA GTTCAGGCTC TCAATTTGTCCGTAT TERM 1738 1768130 - 1768108 - R 100 -16.4 -4.73448 | opp_overlap 1768108 1768105 1768104 ATATACATTTAAAAA GAGCCTGAAC AAA GTTCAGGCTC TCAATTTGTCCGTAT hemL 1769434 - 1768148 - | glutamate-1-semialdehyde aminotransferase TERM 1739 1768669 - 1768653 - G 70 -7.3 -3.81027 | CCTAAGCAAGTTAAA TCTGGTG TCA CACCAAA GTAACCTTGTGCACA hemB 1770456 - 1769482 - | delta-aminolevulinic acid dehydratase hemD 1771127 - 1770459 - | uroporphyrinogen III synthase hemC 1772075 - 1771149 - | porphobilinogen deaminase USA300HOU_1663 1772932 - 1772117 - | cytochrome c assembly protein TERM 1740 1772803 - 1772775 - G 83 -8.3 -4.40232 | ATAAAAATAGATAAA GAGATTGTTTG TAAAACC CAAACAATCCC CAATAAATATATGCC hemA 1774300 - 1772954 - | glutamyl-tRNA reductase USA300HOU_1665 1775107 - 1774517 - | GTPase EngB TERM 1741 1775189 - 1775234 + r 82 -7.8 -4.4595 | gap 1, opp_overlap 1775189, overlap 1775184 ATACATTATAAAAAA GCTCCGATCAAAGTT-AAACT ATTTG AGCGTCAACTTTGATTGGAGC TTTTCACTTTTATAA TERM 1742 1775234 - 1775189 - R 100 -10 -5.35459 | gap 1, opp_overlap 1775184 1775189 ATACATTATAAAAAA GCTCCGATCAAAGTTAA-ACT ATTTG AGCGTCAACTTTGATTGGAGC TTTTCACTTTTATAA clpX 1776523 - 1775261 - | ATP-dependent protease ATP-binding subunit TERM 1743 1776267 - 1776283 + g 83 -5.9 -5.06816 | opp_overlap 1776259 TTATAAACAGCTACA GCTAAAG ATT TTTTAGC TTTTTCTTGACCAAT TERM 1744 1776611 - 1776646 + r 100 -10 -5.05228 | gap 1, opp_overlap 1776611 1776613, overlap 1776611 1776613 TTTTTGCTTAAAGAA T-AGTAGCAGATACATA AGC TATGCATCTGCTACTCA TTTTTGTAATTTAAT TERM 1745 1776611 - 1776645 + r 93 -11.6 -3.6151 | opp_overlap 1776611 1776613, overlap 1776611 1776613 TTTTTGCTTAAAGAA TAGTAGCAGATACATA AGC TATGCATCTGCTACTC ATTTTTGTAATTTAA TERM 1746 1776645 - 1776611 - R 100 -13.8 -3.90744 | opp_overlap 1776611 1776611 1776613, overlap 1776613 TTTTTGCTTAAAGAA TAGTAGCAGATACATA AGC TATGCATCTGCTACTC ATTTTTGTAATTTAA TERM 1747 1776613 - 1776643 + r 100 -14.2 -3.36613 | opp_overlap 1776613 1776611, overlap 1776611 1776611 TTTGCTTAAAGAATA GTAGCAGATACATA AGC TATGCATCTGCTAC TCATTTTTGTAATTT TERM 1748 1776643 - 1776613 - R 100 -16.4 -3.54488 | opp_overlap 1776611 1776611 1776613, overlap 1776611 TTTGCTTAAAGAATA GTAGCAGATACATA AGC TATGCATCTGCTAC TCATTTTTGTAATTT USA300HOU_1667 1777975 - 1776674 - | trigger factor TERM 1749 1778372 - 1778383 + r 71 -3 -5.31519 | opp_overlap 1778372 TAATGTTTCCATAAC GTTA GGTA TAAC TTTTTCTTTAAGTGT TERM 1750 1778741 - 1778760 + r 71 -8 -3.4489 | overlap 1778736 TTTGTGATCTTTGAC TTCATCAA TAAT TTGATGAA TTACTTCTACCGCTT TERM 1751 1779801 - 1779819 + r 86 -7.4 -5.30686 | opp_overlap 1779801, overlap 1779791 TTAAAAAATAAAAAA GAGATGAC AAT GCCATCTC TTTTTTATAAGTGTT TERM 1752 1779819 - 1779801 - R 100 -9.6 -6.04324 | opp_overlap 1779791 1779801 TTAAAAAATAAAAAA GAGATGAC AAT GCCATCTC TTTTTTATAAGTGTT TERM 1753 1781032 - 1781062 + r 100 -17 -3.31799 | opp_overlap 1781032, overlap 1781036 TGCACCAAGCAAAAA GGAAGAGCAGGTAT AAA ATACCCGCTCTTCC TTATACACAGTTATG TERM 1754 1781062 - 1781032 - R 100 -19.2 -4.90266 | opp_overlap 1781032 1781036 TGCACCAAGCAAAAA GGAAGAGCAGGTAT AAA ATACCCGCTCTTCC TTATACACAGTTATG TERM 1755 1781036 - 1781058 + r 83 -10.6 -3.44325 | opp_overlap 1781032, overlap 1781032 CCAAGCAAAAAGGAA GAGCAGGTAT AAA ATACCCGCTC TTCCTTATACACAGT lysP 1782717 - 1781224 - | APC family amino acid-polyamine-organocation transporter TERM 1756 1782847 - 1782817 - R 100 -12 -5.48054 | opp_overlap 1782817 ATTAAAAGTAAAAAA GTGGCTACATACCT TTA AGATATGCAACCAC TTTGGCAATTATCTA thrS 1785080 - 1783143 - | threonyl-tRNA synthetase TERM 1757 1785253 - 1785229 - R 100 -10 -6.12458 | GAAAAAAACAAAAAA TCCCGCCCCT ATACA AGGGACGAGA TCGTCGTGGTACCAC USA300HOU_1670 1785400 - 1785278 - | hypothetical protein dnaI 1786413 - 1785493 - | primosomal protein DnaI dnaB2 1787813 - 1786413 - | replicative DNA helicase USA300HOU_1673 1788284 - 1787814 - | transcriptional regulator NrdR TERM 1758 1788477 - 1788454 - R 100 -11.8 -5.95286 | opp_overlap 1788451 ATTAAAAATAAAAAA CCTAACTCCG AAGT CAGAGTTAGG CTATAAATTAATTGT gapB 1789519 - 1788494 - | glyceraldehyde 3-phosphate dehydrogenase 2 TERM 1759 1789673 - 1789629 - R 79 -5.3 -5.24129 | gap 1, opp_overlap 1789631, overlap 1789631 CTTTTTTATAAAAAA TAGTCATTACT-TACATACA TCAACG CGTACGTAAAGTAATGACTT ATTTATAGTGTAATA TERM 1760 1789671 - 1789631 - R 79 -7.9 -4.25873 | gap 1, opp_overlap 1789631, overlap 1789629 TTTTTATAAAAAATA GTCATTACT-TACATACA TCAACG CGTACGTAAAGTAATGAC TTATTTATAGTGTAA coaE 1790312 - 1789689 - | dephospho-CoA kinase fpg 1791200 - 1790328 - | formamidopyrimidine-DNA glycosylase polA 1793846 - 1791216 - | DNA polymerase I TERM 1761 1793232 - 1793248 + g 74 -5.9 -4.52589 | overlap 1793234 TGTGTCAAATTGGTT TAGCAAT TTT ATTGCTG TTTTCTCTCCAACAC TERM 1762 1793365 - 1793393 + g 76 -4 -5.23316 | gap 1, opp_overlap 1793365 1793374 TCCGCAATAAAGTCA GGTGTATAATGAT CAAC ATCAGTA-ACACC TTTTTTAGTGTAATA USA300HOU_1678 1795642 - 1794140 - | hypothetical protein USA300HOU_1679 1797790 - 1796126 - | sensor histidine kinase USA300HOU_1680 1798491 - 1797787 - | alkaline phosphatase synthesis transcriptional regulatory protein TERM 1763 1798701 - 1798713 + r 72 -6.3 -4.25458 | CCCACTACCTATGCA TGAGT TTT ACTCA TTTATTCCTAAGCTT TERM 1764 1798866 - 1798833 - R 100 -10.4 -4.68424 | opp_overlap 1798833 CAATTCATTTAAAAA GGCGAACCTAGCAA TTAAAG TTGCTAGACTCACC TAATTTTATTTTGCT icd 1800149 - 1798881 - | isocitrate dehydrogenase citZ 1801319 - 1800198 - | methylcitrate synthase USA300HOU_1683 1801667 - 1803028 + | APC family amino acid-polyamine-organocation transporter TERM 1765 1803111 - 1803078 - T 100 -12.7 -5.16572 | opp_overlap 1803078 AGGCAATGTAAAAAA GCTGATTTCTATTAA TTAT TTGATAGAAATCAGC TTTTTTGATATGTAT TERM 1766 1803078 - 1803111 + T 100 -14.9 -5.25893 | opp_overlap 1803078 AGGCAATGTAAAAAA GCTGATTTCTATTAA TTAT TTGATAGAAATCAGC TTTTTTGATATGTAT TERM 1767 1803136 - 1803155 + T 73 -5.8 -4.56314 | gap 1, opp_overlap 1803138, overlap 1803137 1803138 1803140 ATGTATTTTATAATG TA-CAGCTC GTT GAGCTGCTA TTTTCCTTATATTAA TERM 1768 1803152 - 1803138 - T 76 -10 -2.60079 | opp_overlap 1803137 1803136 1803138 1803140 GTATTTTATAATGTA CAGCTC GTT GAGCTG CTATTTTCCTTATAT TERM 1769 1803138 - 1803152 + T 77 -10 -2.91057 | opp_overlap 1803138, overlap 1803137 1803136 1803140 GTATTTTATAATGTA CAGCTC GTT GAGCTG CTATTTTCCTTATAT TERM 1770 1803447 - 1803422 - T 72 -7.7 -3.55761 | opp_overlap 1803426, overlap 1803425 CATTGATGTCTCAAA GAACATGATGA ACAG TCATCACATTC ATATAGTTTGAAGTC TERM 1771 1803821 - 1803807 - T 71 -5.8 -4.50976 | GGTCATAGGATAAAA CAAATT GAG AATTTG TCGCTATTTGTAAAT TERM 1772 1805029 - 1804974 - T 82 -8.7 -3.91032 | gap 1, opp_overlap 1804981, overlap 1804981 GAAGTATTGTATAAA TAGAGAACAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTGTTTTTTT AGGGATTTATGTCCC TERM 1773 1805022 - 1804981 - T 100 -15.6 -3.80279 | gap 1, opp_overlap 1804981, overlap 1804974 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTTAGGGATTT TERM 1774 1804981 - 1805022 + T 100 -15.6 -5.4477 | gap 1, opp_overlap 1804974 1804981 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTTAGGGATTT TERM 1775 1805310 - 1805340 + T 100 -8.4 -5.66684 | opp_overlap 1805310 AGATGAACCAAAAAA CGCCTTTCCATT GTTGATA AATGGAAAGACG TTTTTTTATAAATTA TERM 1776 1805340 - 1805310 - T 100 -10.6 -5.31059 | opp_overlap 1805310 AGATGAACCAAAAAA CGCCTTTCCATT GTTGATA AATGGAAAGACG TTTTTTTATAAATTA pykA 1807110 - 1805353 - | pyruvate kinase TERM 1777 1805809 - 1805827 + g 80 -10.4 -3.0119 | overlap 1805786 1805802 AACAGCTGTTGCAAC TGCATTGT TTA ACAATGCA TCTGTACTCTTACGT pfkA 1808100 - 1807132 - | 6-phosphofructokinase TERM 1778 1808268 - 1808239 - R 100 -10.2 -5.64006 | opp_overlap 1808239 1808254 ACTTAATTAAAAAAA GATTAGTAGCCA CAATTT TGACTACTAATC TTAGTTAAAATTCAG accA 1809313 - 1808369 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 1779 1808947 - 1808959 + g 72 -4.9 -4.78933 | CCATACCAAAATTTC GATAA ATA TTATC TTTTGTATCTTTTCC accD 1810170 - 1809313 - | acetyl-CoA carboxylase subunit beta TERM 1780 1809594 - 1809606 + g 78 -7.7 -4.11394 | TATATAATAGTCCAG CGTCA GAA TGACG TTTTAAAGATACACT TERM 1781 1810277 - 1810299 + r 74 -6.4 -4.42667 | TATTCGTTTGACTGT TGAATGTTTA TCA TAAACTTTCA TTTTCATCATTTTAA TERM 1782 1810345 - 1810361 + r 79 -5.3 -5.20333 | opp_overlap 1810348 AACTTTTAAGCAATT TAATTAA ACG TTAATTA TTTTTATTGTAAATC USA300HOU_1688 1811594 - 1810365 - | malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) TERM 1783 1812016 - 1811976 - R 100 -11.4 -4.34766 | opp_overlap 1811977 1811982, overlap 1811977 AAAAACTAATATAAA CGCAAACTGATGGTTAAA AAATA TCTAACCATCAGTTTACT ATATCATAATTTATT TERM 1784 1811977 - 1812015 + r 79 -10.5 -2.99874 | opp_overlap 1811976 1811977, overlap 1811982 AAAACTAATATAAAC GCAAACTGATGGTTAAA AAATA TCTAACCATCAGTTTAC TATATCATAATTTAT TERM 1785 1812015 - 1811977 - R 100 -14.9 -3.18419 | opp_overlap 1811977 1811982, overlap 1811976 AAAACTAATATAAAC GCAAACTGATGGTTAAA AAATA TCTAACCATCAGTTTAC TATATCATAATTTAT TERM 1786 1811982 - 1812010 + r 82 -9 -3.89956 | opp_overlap 1811977 1811976, overlap 1811977 TAATATAAACGCAAA CTGATGGTTAAA AAATA TCTAACCATCAG TTTACTATATCATAA dnaE2 1815241 - 1812044 - | DNA-directed DNA polymerase III alpha subunit TERM 1787 1812249 - 1812262 + g 74 -3.1 -5.29445 | CTAATTATAATTTGT TTGGC AAAT GCTAA TTTTTGTTCTTCAAA TERM 1788 1812559 - 1812572 + g 77 -5.3 -5.00895 | opp_overlap 1812557, overlap 1812557 ATATCGTTAAATATT GTTTG GCAA CAAAC TTTTTATCTACTGGG USA300HOU_1690 1816203 - 1815262 - | hypothetical protein TERM 1789 1816400 - 1816420 + r 74 -7.5 -3.87373 | opp_overlap 1816401, overlap 1816401 TCTACAAACAATGCA AGTTGGGGT GGG GCCCCAACG TTTGTGCGAAATCTA TERM 1790 1816419 - 1816401 - R 83 -10.3 -3.35696 | opp_overlap 1816400 1816401 CTACAAACAATGCAA GTTGGGG TGGGG CCCCAAC GTTTGTGCGAAATCT TERM 1791 1816401 - 1816419 + r 83 -11 -2.92102 | opp_overlap 1816401, overlap 1816400 CTACAAACAATGCAA GTTGGGGT GGG GCCCCAAC GTTTGTGCGAAATCT USA300HOU_1691 1817762 - 1816464 - | hypothetical protein USA300HOU_1692 1817967 - 1818380 + | universal stress protein USA300HOU_1693 1819374 - 1818685 - | metal-dependent hydrolase TERM 1792 1820506 - 1820525 + G 71 -8.6 -3.05343 | opp_overlap 1820506 GTTATTACAATCGAA CCAGGTAT TTAT GTACCTGG TGTTGCAGGTGTAAG pepQ 1819549 - 1820604 + | M24 family Xaa-Pro dipeptidase TERM 1793 1820638 - 1820626 - T 85 -7.7 -4.82678 | GGATAAAAATGAAAA GCTTG TTA CAAGC GCATTCTCATTCAGT USA300HOU_1695 1820796 - 1820698 - | hypothetical protein ald 1822038 - 1820920 - | alanine dehydrogenase TERM 1794 1821974 - 1821944 - G 70 -6.9 -3.73042 | overlap 1821942 GTTTCCACTAAAACA GTATGCCCACTTT CTACT AAAGCGTGCACAC CACTTGGTGATAAAC USA300HOU_1697 1822179 - 1822679 + | universal stress protein TERM 1795 1822719 - 1822742 + T 100 -11.1 -5.74288 | opp_overlap 1822704 1822719 1822723 CTTGATCATTATGAA CCAAGTGCA ACTTTC TGCACTTGG TTTTTTATTGTTTAT TERM 1796 1822742 - 1822719 - T 95 -11.8 -3.23216 | opp_overlap 1822719, overlap 1822704 1822723 CTTGATCATTATGAA CCAAGTGCAA CTTT CTGCACTTGG TTTTTTATTGTTTAT TERM 1797 1822906 - 1822867 - T 86 -7.4 -5.23765 | gap 2, opp_overlap 1822867 CAAACAATACAAAAA GCGTCTACCT-C-CTACA TATAAT TGTAGCGGAGATAGACGC TTAATATTTATTTAA ackA 1824127 - 1822925 - | acetate kinase TERM 1798 1824016 - 1824004 - G 72 -4.9 -4.66833 | opp_overlap 1823990 CTTCAATTGTAAAAA TTGAA TCC TTCAA TCCGATTCTTTCTAC USA300HOU_1699 1825162 - 1824215 - | hypothetical protein ahpC2 1825779 - 1825285 - | peroxiredoxin USA300HOU_1701 1826647 - 1825877 - | hypothetical protein TERM 1799 1826418 - 1826406 - G 83 -6.3 -4.98672 | GCCAAAAATACAAAA CCAAA TAA TTTGG CAACAACATATAAGT thiI 1827914 - 1826691 - | thiamine biosynthesis protein csd2 1829053 - 1827914 - | cysteine desulfurase TERM 1800 1829355 - 1829325 - g 100 -13.4 -5.38047 | opp_overlap 1829324 1829323 1829328 TATCCATATAAAAAA GAAGCTAGACAACG TAT CGTTGGCTAACTTC AATTATTAAACTCAT USA300HOU_1704 1829211 - 1829351 + | hypothetical protein ezrA 1831119 - 1829425 - | septation ring formation regulator EzrA USA300HOU_1706 1831256 - 1831720 + | GAF domain-containing protein rpsD 1831964 - 1832566 + | 30S ribosomal protein S4 TERM 1801 1832582 - 1832599 + TF 100 -11.3 -6.15536 | opp_overlap 1832582 TACGTTCAATACAAA CACCCAC AATT GTGGGTG TTTTTTTTATTAATT TERM 1802 1832599 - 1832582 - Tf 100 -11.3 -4.19624 | opp_overlap 1832582 TACGTTCAATACAAA CACCCAC AATT GTGGGTG TTTTTTTTATTAATT ugpQ2 1833525 - 1832782 - | glycerophosphodiester phosphodiesterase USA300HOU_1708 1832639 - 1832893 + | hypothetical protein TERM 1803 1833098 - 1833108 + gF 83 -6.8 -4.87892 | TGTATAACTACTTGT GTCG CAT CGAC TTTCTTTTCTTCCAA USA300HOU_1710 1833605 - 1834051 + | hypothetical protein TERM 1804 1834061 - 1834095 + F 83 -6.7 -5.15117 | gap 1, opp_overlap 1834055, overlap 1834055 AAATAAAATCGTTAA GTGATAACGTT-TGTT CGAC AATATAGCGTTATCAC TTTTTTAGGCTTTTA USA300HOU_1711 1834165 - 1835325 + | class V aminotransferase serA 1835312 - 1836916 + | D-3-phosphoglycerate dehydrogenase USA300HOU_1713 1836998 - 1836888 - | hypothetical protein TERM 1805 1836977 - 1836938 - G 100 -13.1 -4.36595 | gap 1, opp_overlap 1836938 TATGTAAATTCAAAA TGCCAAGAAGACATTGGA TTACT TCCATTG-CTTCTTGGCA TTTTTTCATTATTAA TERM 1806 1836938 - 1836977 + g 100 -13.1 -5.37865 | gap 1, opp_overlap 1836938 TATGTAAATTCAAAA TGCCAAGAAGACATTGGA TTACT TCCATTG-CTTCTTGGCA TTTTTTCATTATTAA USA300HOU_1714 1838196 - 1837066 - | hypothetical protein TERM 1807 1838286 - 1838257 - R 86 -5 -5.52986 | ATTTGACTAAAAAAA GCGCAAACCCTA TTGAAG TTAGATTTGCGC TTTAGCTGTTTAAAT USA300HOU_1715 1839769 - 1838303 - | PTS family porter component IIBC USA300HOU_1716 1840686 - 1841960 + | peptidase TERM 1808 1842034 - 1841976 - T 73 -5.8 -4.64844 | gap 3, opp_overlap 1841982 1841985, overlap 1841977 1841985 TTTACAGACAGAAAA GTACATTAAGAGCCTACTCAT-TACATTC TTAG GAATGAATATGAGTAGGCTCT-AATTTA- TTTAGCTATGCAATT TERM 1809 1842034 - 1841977 - T 95 -11.8 -3.38183 | opp_overlap 1841982 1841985, overlap 1841976 1841985 TTACAGACAGAAAAG TACATTAAGAGCCTACTCAT-TACATTC TTAG GAATGAATATGAGTAGGCTCT-AATTTA TTTAGCTATGCAATT TERM 1810 1841982 - 1842030 + T 100 -14.2 -4.48299 | gap 1, opp_overlap 1841976 1841977 1841985, overlap 1841985 GACAGAAAAGTACAT TAAGAGCCTACTCAT-TACATTC TTAG GAATGAATATGAGTAGGCTCTAA TTTATTTAGCTATGC TERM 1811 1841985 - 1842027 + T 100 -15.9 -3.19523 | gap 1, opp_overlap 1841976 1841977 1841985, overlap 1841982 AGAAAAGTACATTAA GAGCCTACTCAT-TACATTC TTAG GAATGAATATGAGTAGGCTC TAATTTATTTAGCTA TERM 1812 1842027 - 1841985 - T 100 -15.9 -3.38134 | gap 1, opp_overlap 1841985 1841982, overlap 1841976 1841977 AGAAAAGTACATTAA GAGCCTACTCAT-TACATTC TTAG GAATGAATATGAGTAGGCTC TAATTTATTTAGCTA tyrS 1843316 - 1842054 - | tyrosyl-tRNA synthetase TERM 1813 1843415 - 1843393 - H 100 -7.8 -5.86332 | TGAACGTAAAAAAAA CCCTTACA ACAAATA TGTAAGGG CGCGATTGCACGTTA sgtA 1843698 - 1844603 + | transglycosylase USA300HOU_1719 1844675 - 1844583 - | hypothetical protein TERM 1814 1844652 - 1844699 + g 80 -5.1 -5.35815 | gap 1, opp_overlap 1844655, overlap 1844655 GAATCCAAATATTAA AAACAGCAGTAAGATTATTTTC AATTA GAAAATT-TCTCACTGCTGTTC TTTTTATTTACTCTA TERM 1815 1844696 - 1844655 - G 95 -9 -4.93696 | gap 1, opp_overlap 1844655 1844652 TCCAAATATTAAAAA CAGCAGTAAGATTATTTTC AATTA GAAAATT-TCTCACTGCTG TTCTTTTTATTTACT TERM 1816 1844655 - 1844696 + g 80 -6.8 -4.74052 | gap 1, opp_overlap 1844655, overlap 1844652 TCCAAATATTAAAAA CAGCAGTAAGATTATTTTC AATTA GAAAATT-TCTCACTGCTG TTCTTTTTATTTACT USA300HOU_1720 1847493 - 1844806 - | cell wall surface anchored protein TERM 1817 1846029 - 1846056 + g 70 -3.6 -4.93318 | gap 1, overlap 1846023 1846029 1846031 CTTGTCTTTCTAACG TT-TTAGCTTTGT GAT ACGGAGCTAATAA TTTTTGTAAATTGTA TERM 1818 1847741 - 1847706 - R 84 -7 -5.23316 | gap 1, overlap 1847683 TAGCACAGCAAAAAA CCGAACTGCT-GAAATA ATG CATCTCCAACAGTCCGG TCTATTAAACTATTT fhs 1849489 - 1847789 - | formate--tetrahydrofolate ligase acsA1 1851602 - 1849896 - | acetyl-CoA synthetase acuA 1851771 - 1852403 + | acetoin utilization protein AcuA acuC 1852428 - 1853597 + | acetoin utilization protein AcuC TERM 1819 1853633 - 1853684 + T 70 -5.2 -4.53707 | gap 1, opp_overlap 1853636, overlap 1853634 1853636 TTTAAAAGATAAATA AAAGGCATTCTTCCAAC-ACCCATA TAA TTTGGGTCGTTAGATGAATGCCTAA TTTTGTGAATTTATT TERM 1820 1853634 - 1853683 + T 74 -8.7 -3.30597 | gap 1, opp_overlap 1853636, overlap 1853633 1853636 TTAAAAGATAAATAA AAGGCATTCTTCCAAC-ACCCATA TAA TTTGGGTCGTTAGATGAATGCCTA ATTTTGTGAATTTAT TERM 1821 1853636 - 1853681 + T 91 -11.3 -3.20462 | gap 1, opp_overlap 1853636, overlap 1853634 1853633 AAAAGATAAATAAAA GGCATTCTTCCAAC-ACCCATA TAA TTTGGGTCGTTAGATGAATGCC TAATTTTGTGAATTT TERM 1822 1853681 - 1853636 - T 100 -13.5 -5.15682 | gap 1, opp_overlap 1853636 1853634 1853633 AAAAGATAAATAAAA GGCATTCTTCCAAC-ACCCATA TAA TTTGGGTCGTTAGATGAATGCC TAATTTTGTGAATTT ccpA 1854684 - 1853695 - | catabolite control protein A TERM 1823 1853975 - 1853985 + g 71 -6.8 -4.19735 | opp_overlap 1853969 CATAAAATGGCATCT GGCA AAT TGCC TTTCATTTTGGCAAA USA300HOU_1726 1854870 - 1854757 - | hypothetical protein TERM 1824 1855143 - 1855101 - R 100 -10.8 -5.36441 | opp_overlap 1855100 1855101 1855104, overlap 1855104 1855106 TTTCTATACAAAAAA TAATAGCCACTCTAAAAGTA ATA TACTCTTAGAATGGCTGTAA GTTTAAAATTGTCGA TERM 1825 1855101 - 1855143 + r 71 -8.6 -2.81291 | opp_overlap 1855101 1855104 1855106, overlap 1855100 1855104 TTTCTATACAAAAAA TAATAGCCACTCTAAAAGTA ATA TACTCTTAGAATGGCTGTAA GTTTAAAATTGTCGA TERM 1826 1855140 - 1855104 - R 100 -12.5 -4.77122 | opp_overlap 1855104 1855101 1855100, overlap 1855101 1855106 CTATACAAAAAATAA TAGCCACTCTAAAAGTA ATA TACTCTTAGAATGGCTG TAAGTTTAAAATTGT TERM 1827 1855104 - 1855140 + r 78 -10.3 -2.66593 | opp_overlap 1855101 1855104 1855106, overlap 1855101 1855100 CTATACAAAAAATAA TAGCCACTCTAAAAGTA ATA TACTCTTAGAATGGCTG TAAGTTTAAAATTGT TERM 1828 1855138 - 1855106 - R 100 -15.1 -3.97741 | opp_overlap 1855104 1855101 1855100, overlap 1855104 1855101 ATACAAAAAATAATA GCCACTCTAAAAGTA ATA TACTCTTAGAATGGC TGTAAGTTTAAAATT USA300HOU_1727 1856315 - 1855224 - | bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase TERM 1829 1856777 - 1856793 + r 71 -4.5 -4.74706 | CTAAAATTCATTGTT TATTTGA TTA TCGAATA TTTTTCCATCTTCAG TERM 1830 1856935 - 1856914 - R 86 -7.3 -5.23316 | opp_overlap 1856909 1856914 GATGATATCAAAAAA GGTAAGCAC CTGA ATGCCTACC TTTTATTTTGAAATT TERM 1831 1856914 - 1856935 + r 72 -4.4 -5.10163 | opp_overlap 1856914, overlap 1856909 GATGATATCAAAAAA GGTAAGCA CCTGAA TGCCTACC TTTTATTTTGAAATT USA300HOU_1728 1858373 - 1857015 - | hypothetical protein TERM 1832 1858434 - 1858392 - R 100 -16 -3.29829 | opp_overlap 1858392 1858396, overlap 1858396 TATATCCTCCTATAA CAAATGCACTTAAATAAG TAACAAC CTCATTTAAGTGCATTTG TTTAATTATTAATTA TERM 1833 1858392 - 1858434 + r 100 -13.8 -4.11412 | opp_overlap 1858392 1858396, overlap 1858396 TATATCCTCCTATAA CAAATGCACTTAAATAAG TAACAAC CTCATTTAAGTGCATTTG TTTAATTATTAATTA TERM 1834 1858396 - 1858430 + r 89 -8.8 -4.62392 | opp_overlap 1858392 1858396, overlap 1858392 TCCTCCTATAACAAA TGCACTTAAATAAG TAACAAC CTCATTTAAGTGCA TTTGTTTAATTATTA TERM 1835 1858430 - 1858396 - R 100 -11 -4.30719 | opp_overlap 1858396 1858392, overlap 1858392 TCCTCCTATAACAAA TGCACTTAAATAAG TAACAAC CTCATTTAAGTGCA TTTGTTTAATTATTA USA300HOU_1729 1858938 - 1858447 - | hypothetical protein murC 1860325 - 1859012 - | UDP-N-acetylmuramate--L-alanine ligase TERM 1836 1860157 - 1860177 + g 73 -4.1 -4.88388 | TATCTTCTTTTATGT TATTAGCAT CAA ATGGTAATA TTTTTATCCCCTTAT USA300HOU_1731 1864173 - 1860349 - | DNA translocase TERM 1837 1863875 - 1863885 + g 70 -4.6 -4.82901 | GTTTGATTTCTTCTA CGGC GAT GTCG TTTTTGTGAACGAGA pheT2 1864790 - 1864194 - | phenylalanine--tRNA ligase beta subunit USA300HOU_1733 1865661 - 1864819 - | hypothetical protein TERM 1838 1865768 - 1865735 - R 93 -11.2 -3.38297 | opp_overlap 1865737 1865739, overlap 1865737 1865746 ATCAACACATAGTAA CAGAGAAAAACGAG TATTAC CCCGTTTTTCTCTA GTCTAAATTACACGT TERM 1839 1865737 - 1865766 + r 73 -9.4 -2.66733 | opp_overlap 1865735 1865737 1865746, overlap 1865739 CAACACATAGTAACA GAGAAAAACGAG TATTAC CCCGTTTTTCTC TAGTCTAAATTACAC TERM 1840 1865766 - 1865737 - R 93 -11.6 -3.25307 | opp_overlap 1865737 1865739, overlap 1865735 1865746 CAACACATAGTAACA GAGAAAAACGAG TATTAC CCCGTTTTTCTC TAGTCTAAATTACAC USA300HOU_1734 1866087 - 1865776 - | thioredoxin pepA1 1867228 - 1866152 - | M42 family glutamyl aminopeptidase USA300HOU_1736 1867315 - 1867626 + | hypothetical protein TERM 1841 1867670 - 1867709 + T 91 -5.1 -5.93252 | gap 1, opp_overlap 1867671, overlap 1867671 TCGTAAAACTTAAAA ATGAGCCACACCCTAATT AGTAA GATT-GGATGTGGCTCAA TTTTTTATTTTTGAA TERM 1842 1867708 - 1867671 - T 100 -10.1 -4.87318 | gap 1, opp_overlap 1867671 1867670 CGTAAAACTTAAAAA TGAGCCACACCCTAAT TAGTAAG ATT-GGATGTGGCTCA ATTTTTTATTTTTGA TERM 1843 1867671 - 1867708 + T 83 -8.6 -4.13511 | gap 1, opp_overlap 1867671, overlap 1867670 CGTAAAACTTAAAAA TGAGCCACACCCTAATT AGTAA GATT-GGATGTGGCTCA ATTTTTTATTTTTGA USA300HOU_1737 1868593 - 1867751 - | metal-dependent hydrolase TERM 1844 1868938 - 1868978 + r 84 -8.6 -4.30987 | gap 2, opp_overlap 1868938 TTCAAAATCAAAAAA TCGGACAGAT-G-AAAAGTT AAA AACTTTTTCCATCAGTCCGA TTTATTATAGAACCT TERM 1845 1868978 - 1868938 - R 100 -8.6 -5.46698 | gap 2, opp_overlap 1868938 TTCAAAATCAAAAAA TCGGACAGAT-G-AAAAGTT AAA AACTTTTTCCATCAGTCCGA TTTATTATAGAACCT TERM 1846 1869060 - 1869025 - R 100 -10.6 -5.20216 | opp_overlap 1869024 1869022 1869025 1869027 TATAGTACGAAAAAA CACTTATGATTGTATG TGTA CATACCCTCATAAGTG CTCTATTTTTGTGAA TERM 1847 1869025 - 1869060 + r 78 -10.6 -2.75877 | opp_overlap 1869025, overlap 1869024 1869022 1869027 TATAGTACGAAAAAA CACTTATGATTGTATG TGTA CATACCCTCATAAGTG CTCTATTTTTGTGAA trmB 1869707 - 1869063 - | tRNA (guanine-N(7)-)-methyltransferase TERM 1848 1869319 - 1869309 - G 74 -5.4 -4.69622 | overlap 1869300 ATACAACGCTAAAAA CGTA TGA TACG TTAAACGTCGTTTTG USA300HOU_1739 1870522 - 1869722 - | hypothetical protein TERM 1849 1870542 - 1870571 + H 78 -9.4 -3.25809 | opp_overlap 1870542, overlap 1870540 1870534 CTTTCAATTAGAAAA TGGCTCTAGAAA TAGGTT TTTCAAGAGCCA TATATTCTAATTTAT TERM 1850 1870571 - 1870542 - H 100 -9.4 -4.5442 | opp_overlap 1870540 1870534 1870542 CTTTCAATTAGAAAA TGGCTCTAGAAA TAGGTT TTTCAAGAGCCA TATATTCTAATTTAT USA300HOU_1740 1870857 - 1870952 + | hypothetical protein daaA 1871911 - 1871063 - | D-alanine aminotransferase USA300HOU_1742 1873324 - 1871915 - | dipeptidase PepV TERM 1851 1873957 - 1873969 + r 90 -7.7 -5.1925 | opp_overlap 1873957 1873956 1873948 ACTGAATGAAAATAC GCTTG TAA CAAGC TTTTTTCAATTCTAG USA300HOU_1743 1874496 - 1874074 - | hypothetical protein rsuA 1875208 - 1874513 - | pseudouridylate synthase USA300HOU_1745 1876866 - 1875205 - | polysaccharide biosynthesis protein USA300HOU_1746 1877273 - 1878541 + | flavoprotein TERM 1852 1878600 - 1878648 + T 82 -8.7 -4.02535 | gap 3, opp_overlap 1878600 TCATTCAAATAAAAA TGACCTTAATATAACTGAGTCACT AAAA AGTG--TC-GTTATATTAAGGTCA TTTCGTTAATTATGA TERM 1853 1878648 - 1878600 - T 100 -8.7 -5.30616 | gap 3, opp_overlap 1878600 TCATTCAAATAAAAA TGACCTTAATATAACTGAGTCACT AAAA AGTG--TC-GTTATATTAAGGTCA TTTCGTTAATTATGA fmtB1 1885218 - 1878658 - | cell surface anchored protein TERM 1854 1882418 - 1882446 + g 73 -7.3 -3.98826 | overlap 1882423 1882436 GCGTTTAAAATGTTT GTGTTTGCTGCAG TTA CAGCAGCATTCAC TTTGTCAATTGCTGC TERM 1855 1882423 - 1882441 + g 75 -8.8 -3.34113 | overlap 1882418 1882436 TAAAATGTTTGTGTT TGCTGCAG TTA CAGCAGCA TTCACTTTGTCAATT TERM 1856 1885503 - 1885476 - R 100 -10.7 -5.22312 | opp_overlap 1885476 1885478 ATTCATACCAAAAAA CACCAAGCAAC CGAAAC GTTACTTGGTG TCATTACAAATGTAA USA300HOU_1748 1885855 - 1885544 - | sulfurtransferase leuS 1888294 - 1885877 - | leucyl-tRNA synthetase TERM 1857 1888216 - 1888230 + g 73 -3.6 -5.13722 | overlap 1888225 TTTGACCTAAGTTAT CATTTG TTT TAAATG TTTTATTTTCGTCCC USA300HOU_1750 1889763 - 1888582 - | major facilitator transporter USA300HOU_1751 1889873 - 1890826 + | hypothetical protein USA300HOU_1752 1890823 - 1891386 + | hypothetical protein TERM 1858 1891463 - 1891488 + T 100 -10.6 -4.98436 | opp_overlap 1891463 TGCCAACAACAAAAA GAGGTTTTCA ACTTAA TGAAAACCTC TTTTTATGCTATTAA TERM 1859 1891488 - 1891463 - T 100 -10.6 -5.29445 | opp_overlap 1891463 TGCCAACAACAAAAA GAGGTTTTCA ACTTAA TGAAAACCTC TTTTTATGCTATTAA rot 1892006 - 1891506 - | repressor of toxins Rot TERM 1860 1892468 - 1892447 - R 76 -3.8 -5.4477 | gap 1, opp_overlap 1892447 AAAGTTCTAAAAAAA GATGAG-CA TCTAC TGTCTCATC TTTCAGTTCTTTTTT TERM 1861 1893456 - 1893401 - R 100 -13.1 -3.91032 | gap 1, opp_overlap 1893408, overlap 1893408 GAAGTATTGTATAAA TAGAGAACAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTGTTTTTTA GGGATTTATGTCCCA TERM 1862 1893449 - 1893408 - R 100 -15.6 -3.80279 | gap 1, opp_overlap 1893408, overlap 1893401 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTAGGGATTTA TERM 1863 1893408 - 1893449 + r 100 -15.6 -5.07107 | gap 1, opp_overlap 1893401 1893408 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTAGGGATTTA USA300HOU_1755 1894313 - 1893486 - | lysophospholipase TERM 1864 1894638 - 1894616 - g 82 -4.1 -5.54894 | gap 1, overlap 1894617 AACGCAGCAAAAAAA GTGG-GCCCA CGTT TGGGCGCCAA TAAAGTCGTTGCCGG TERM 1865 1894637 - 1894617 - g 76 -7.6 -3.9131 | gap 1, overlap 1894616 ACGCAGCAAAAAAAG TGG-GCCCA CGTT TGGGCGCCA ATAAAGTCGTTGCCG TERM 1866 1895479 - 1895509 + G 70 -8.4 -3.29324 | opp_overlap 1895485, overlap 1895490 CTTAAAACGTGTTGG CATAATTGCAGCTT TAG GAGCTACAGTTATG TTAGGTTTAAGTACA putA 1894547 - 1895548 + | proline dehydrogenase TERM 1867 1895566 - 1895611 + T 95 -12.1 -3.67498 | opp_overlap 1895565 1895562 1895568, overlap 1895568 CAAGACATAAACAAT AATTTAGGAGTCTGGAACAAT AATC AATGTTCTAGGCTCCTAAATG TTATATTGGCAGTTC TERM 1868 1895609 - 1895568 - T 95 -10.3 -4.19887 | opp_overlap 1895566 1895568, overlap 1895565 1895562 AGACATAAACAATAA TTTAGGAGTCTGGAACAAT AATC AATGTTCTAGGCTCCTAAA TGTTATATTGGCAGT TERM 1869 1895568 - 1895609 + T 100 -14.7 -3.41292 | opp_overlap 1895568 1895565 1895562, overlap 1895566 AGACATAAACAATAA TTTAGGAGTCTGGAACAAT AATC AATGTTCTAGGCTCCTAAA TGTTATATTGGCAGT ribH 1896134 - 1895670 - | riboflavin synthase beta subunit ribA 1897328 - 1896147 - | riboflavin biosynthesis protein ribB 1897971 - 1897339 - | riboflavin synthase subunit alpha ribD 1899021 - 1897978 - | diaminohydroxyphosphoribosylaminopyrimidine deaminase TERM 1870 1899073 - 1899045 - R 81 -4.6 -5.38054 | CTCTATAAACAAAAA TCCTCACATCAT GAATT AAGATGCAAGGA GAAAAATTTATCGTT USA300HOU_1761 1901004 - 1899502 - | hypothetical protein USA300HOU_1762 1901146 - 1901027 - | hypothetical protein TERM 1871 1901312 - 1901348 + H 100 -11.8 -4.65895 | opp_overlap 1901308 1901303 1901304 1901312 AATAAATTCAACTAA GGTGATTGGCCATA CACTCAAGA TATGGCTAATCACC TTTTTCAATGCAGAA TERM 1872 1901348 - 1901312 - H 83 -10.3 -3.44891 | opp_overlap 1901312, overlap 1901308 1901303 1901304 AATAAATTCAACTAA GGTGATTGGCCATAC ACTCAAG ATATGGCTAATCACC TTTTTCAATGCAGAA TERM 1873 1902496 - 1902482 - g 74 -6.4 -4.37544 | opp_overlap 1902481 TGATAATAATATAAA GCATCC TAA AGATGC CATTAATGATTTAAA arsB 1901841 - 1903133 + | ArsB arsenite-antimonite efflux family transporter membrane protein arsC2 1903151 - 1903546 + | arsenate reductase TERM 1874 1903660 - 1903640 - T 81 -9.1 -3.61527 | overlap 1903642 ACTTAAAAATAGGAA TACATGAGT AAA ACTCATGCA TAAGAAATACTAATT TERM 1875 1903658 - 1903642 - T 78 -9.5 -3.37164 | overlap 1903640 TTAAAAATAGGAATA CATGAGT AAA ACTCATG CATAAGAAATACTAA TERM 1876 1903763 - 1903795 + T 100 -15.1 -4.84527 | opp_overlap 1903763 1903785 TCTCTAATGCAAAAA GACGCTTTCTATC AAAACAA GATAGAAAGCGTC TTTTTAGTATGTCCG TERM 1877 1903795 - 1903763 - T 100 -15.1 -4.74103 | opp_overlap 1903763, overlap 1903785 TCTCTAATGCAAAAA GACGCTTTCTATC AAAACAA GATAGAAAGCGTC TTTTTAGTATGTCCG USA300HOU_1765 1904695 - 1903841 - | mannosyl-glycoprotein endo-beta-N-glucosaminidase TERM 1878 1904965 - 1904951 - H 70 -3.6 -5.1675 | opp_overlap 1904951 TCACGTATTAAAAAA CAAAAA ATT CTTTTG TTCGTTTACTTAGTT rpoE1 1905316 - 1905864 + | DNA-directed RNA polymerase sigma subunit RpoE TERM 1879 1906263 - 1906232 - g 81 -7.4 -4.45168 | opp_overlap 1906233, overlap 1906233 CCGTTAAAACATAAA CGTGCACCGATACA AATT TATATCAATGCACA TTATATTGTTGGTAT TERM 1880 1906262 - 1906233 - g 73 -8.7 -3.26378 | opp_overlap 1906233, overlap 1906232 CGTTAAAACATAAAC GTGCACCGATACA AATT TATATCAATGCAC ATTATATTGTTGGTA USA300HOU_1767 1905977 - 1906420 + | hypothetical protein USA300HOU_1768 1906850 - 1906407 - | hypothetical protein USA300HOU_1769 1907146 - 1907781 + | hypothetical protein TERM 1881 1908176 - 1908202 + T 84 -9.4 -3.79565 | opp_overlap 1908176 ACTATGATGGAAAAA CCCCCATAAGCA CAA TGCCTATGAGGG TTTAAATATATTTAT TERM 1882 1908202 - 1908176 - T 100 -13.8 -4.68994 | opp_overlap 1908176 ACTATGATGGAAAAA CCCCCATAAGCA CAA TGCCTATGAGGG TTTAAATATATTTAT USA300HOU_1770 1908934 - 1908221 - | putative translaldolase TERM 1883 1908984 - 1909014 + H 74 -2.1 -5.56573 | gap 1, opp_overlap 1908999, overlap 1908988 1908999 1909005 AACAACATCTGCATG TCTTTTTCTTACAA CCAT TTGTAA-AAAATGA TTTTTATTTCTTTGT TERM 1884 1909228 - 1909247 + G 70 -2.2 -5.33405 | ACTTTTACTTATCTA GCTTAA TGATTATT TTAAGC TTTTTCTTTAATACA USA300HOU_1771 1909194 - 1909496 + | hypothetical protein TERM 1885 1909712 - 1909663 - f 71 -8.7 -2.84262 | gap 1, opp_overlap 1909663, overlap 1909662 1909665 GATATAACATATAAT GAGG-TTTGATAATGCATCGACAA TTT TTGTCGTCGCGTTGCCAAAACCTC TTTTTTAAATTCAAA TERM 1886 1909663 - 1909712 + F 100 -8.7 -5.15969 | gap 1, opp_overlap 1909663 1909662 1909665 GATATAACATATAAT GAGG-TTTGATAATGCATCGACAA TTT TTGTCGTCGCGTTGCCAAAACCTC TTTTTTAAATTCAAA crcB 1909674 - 1910117 + | camphor resistance protein CrcB USA300HOU_1773 1910114 - 1910467 + | camphor resistance protein TERM 1887 1910664 - 1910719 + T 74 -7.3 -3.91032 | gap 1, opp_overlap 1910673, overlap 1910671 1910673 TGGGACATAAATCCC TAAAAAAAAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTGTTCTCTA TTTATACAATACTTC TERM 1888 1910671 - 1910712 + T 86 -9.8 -3.80279 | gap 1, opp_overlap 1910673, overlap 1910664 1910673 TAAATCCCTAAAAAA AAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 1889 1910673 - 1910710 + T 100 -12.4 -3.47615 | gap 1, opp_overlap 1910673, overlap 1910671 1910664 AATCCCTAAAAAAAA GCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGC TGTTCTCTATTTATA TERM 1890 1910710 - 1910673 - T 100 -12.4 -5.77853 | gap 1, opp_overlap 1910671 1910664 1910673 AATCCCTAAAAAAAA GCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGC TGTTCTCTATTTATA TERM 1891 1911740 - 1911754 + T 71 -5.8 -4.50976 | ATTTACAAATAGCGA CAAATT CTC AATTTG TTTTATCCTATGACC TERM 1892 1912412 - 1912393 - T 73 -5.8 -4.56314 | gap 1, opp_overlap 1912396, overlap 1912395 1912396 1912398 TTAATATAAGGAAAA TAGCAGCTC AAC GAGCTG-TA CATTATAAAATACAT TERM 1893 1912410 - 1912396 - T 77 -10 -2.91057 | opp_overlap 1912396, overlap 1912395 1912393 1912398 ATATAAGGAAAATAG CAGCTC AAC GAGCTG TACATTATAAAATAC TERM 1894 1912396 - 1912410 + T 76 -10 -2.60079 | opp_overlap 1912396 1912395 1912393 1912398 ATATAAGGAAAATAG CAGCTC AAC GAGCTG TACATTATAAAATAC TERM 1895 1912470 - 1912437 - T 100 -14.9 -5.25893 | opp_overlap 1912437 ATACATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT TERM 1896 1912437 - 1912470 + T 100 -12.7 -5.16572 | opp_overlap 1912437 ATACATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT USA300HOU_1775 1913383 - 1912550 - | aldo/keto reductase TERM 1897 1913587 - 1913555 - R 95 -7.8 -5.42514 | TGACAAACTAAAAAA GCCGAAGTAACAAC ATATA GTCATCACTTCAGC CTAACATTTAATTGA USA300HOU_1776 1914503 - 1913595 - | hypothetical protein TERM 1898 1914598 - 1914561 - R 74 -7.3 -3.99216 | opp_overlap 1914561, overlap 1914550 AATAGAAAAGCTAAA GATTTTCGATACATA TTATCATT TATATACCGAAAATC TTTTATTTAGCTATA metK 1915821 - 1914628 - | S-adenosylmethionine synthetase TERM 1899 1915215 - 1915248 + g 72 -9.1 -2.65876 | gap 1, opp_overlap 1915234, overlap 1915212 TCACATCCTCAGCAT GT-TGTGTTGATACGA CAA TCGTATCAATACGTAC TGGGTTATCATTTTC TERM 1900 1915911 - 1915880 - H 90 -6.6 -5.65927 | GAGCTAAATAAAAAA GACCTTCTAACTAT TAAT ATAGAGAGAAGGCC TAATACGTCCATTCG TERM 1901 1916167 - 1916144 - H 72 -8.4 -3.26319 | opp_overlap 1916144 1916143 1916149, overlap 1916149 AATGTGTTATACTAA TTAAATGTAA AGGC TTACATTTAA ATTATCGCTTTGGAG pckA 1916192 - 1917784 + | phosphoenolpyruvate carboxykinase TERM 1902 1917824 - 1917805 - T 100 -13.6 -4.61284 | opp_overlap 1917805 AATACTAAATCAAAA CCACCCGT GTGA ACGGGTGG TTTGTTCTGCGGCTA TERM 1903 1917805 - 1917824 + T 100 -13.6 -4.31433 | opp_overlap 1917805 AATACTAAATCAAAA CCACCCGT GTGA ACGGGTGG TTTGTTCTGCGGCTA TERM 1904 1917904 - 1917925 + T 85 -2.9 -5.88476 | overlap 1917906 ACTGCACTACTATTC CAGCAACCC TAAA GGGTTACTC TTTTTTCTTTCTTTT TERM 1905 1917906 - 1917923 + T 71 -5.5 -4.51345 | overlap 1917904 TGCACTACTATTCCA GCAACCC TAAA GGGTTAC TCTTTTTTCTTTCTT USA300HOU_1779 1918321 - 1917920 - | transposase TERM 1906 1918508 - 1918526 + r 100 -13.2 -5.27023 | opp_overlap 1918511, overlap 1918525 AGAACCTTTTCTGAA CCATACGC ATA GCGTATGG TTTTCTTTTTACAAT TERM 1907 1918542 - 1918588 + r 100 -10.6 -4.57353 | gap 2, opp_overlap 1918546, overlap 1918525 1918543 1918545 1918546 1918548 TTTTCTTTTTACAAT TAA-AG-AGCCAACCGTTGTTA TAGTC TAACAATGGTTGGCTCCTCTTA TTTTATGTGCTAAAA TERM 1908 1918543 - 1918585 + r 100 -12.9 -4.39748 | opp_overlap 1918546, overlap 1918525 1918542 1918545 1918546 1918548 TTTCTTTTTACAATT AAAGAGCCAACCGTTGTTA TAGTC TAACAATGGTTGGCTCCTC TTATTTTATGTGCTA TERM 1909 1918545 - 1918583 + r 100 -15.5 -3.78861 | opp_overlap 1918546, overlap 1918525 1918543 1918542 1918546 1918548 TCTTTTTACAATTAA AGAGCCAACCGTTGTTA TAGTC TAACAATGGTTGGCTCC TCTTATTTTATGTGC TERM 1910 1918582 - 1918546 - R 100 -16.8 -3.9941 | opp_overlap 1918525 1918545 1918543 1918542 1918546 1918548 CTTTTTACAATTAAA GAGCCAACCGTTGTTA TAGTC TAACAATGGTTGGCTC CTCTTATTTTATGTG TERM 1911 1918546 - 1918582 + r 100 -19 -2.86232 | opp_overlap 1918546, overlap 1918525 1918545 1918543 1918542 1918548 CTTTTTACAATTAAA GAGCCAACCGTTGTTA TAGTC TAACAATGGTTGGCTC CTCTTATTTTATGTG TERM 1912 1918548 - 1918580 + r 100 -15.8 -2.95962 | opp_overlap 1918546, overlap 1918525 1918546 1918545 1918543 1918542 TTTTACAATTAAAGA GCCAACCGTTGTTA TAGTC TAACAATGGTTGGC TCCTCTTATTTTATG USA300HOU_1780 1919550 - 1918780 - | hypothetical protein USA300HOU_1781 1920010 - 1919531 - | hypothetical protein USA300HOU_1782 1920070 - 1920327 + | hypothetical protein USA300HOU_1783 1921325 - 1920324 - | o-succinylbenzoic acid (OSB) synthetase TERM 1913 1920383 - 1920358 - G 73 -7.5 -3.78022 | opp_overlap 1920358 GTTATATCCACTAAA GGGGGGCGA AATTCGAG TCGCCCCTC TTTTAATATGCCTGA TERM 1914 1920358 - 1920383 + g 100 -9.7 -4.3586 | opp_overlap 1920358 GTTATATCCACTAAA GGGGGGCGA AATTCGAG TCGCCCCTC TTTTAATATGCCTGA USA300HOU_1784 1922808 - 1921330 - | o-succinylbenzoic acid--CoA ligase USA300HOU_1785 1923449 - 1922967 - | hypothetical protein USA300HOU_1786 1923725 - 1924375 + | hypothetical protein USA300HOU_1787 1924456 - 1925451 + | hypothetical protein TERM 1915 1925459 - 1925475 + F 100 -12.3 -4.17048 | opp_overlap 1925456 1925455 CAGAATAAAATTTCA GGGTAGC TCG GCTACCC TTCTTTTACGGAAAA TERM 1916 1925847 - 1925878 + F 79 -8.2 -3.91821 | opp_overlap 1925847 1925846, overlap 1925831 1925829 CACACCATTAAAACG TTGTGCTATTGT TAATCGAC ACAATGGCACAA TTATTAATATTTTTG USA300HOU_1789 1926194 - 1926538 + | hypothetical protein USA300HOU_1790 1926636 - 1927187 + | hypothetical protein TERM 1917 1927347 - 1927289 - T 85 -8.4 -4.4195 | opp_overlap 1927291, overlap 1927277 1927291 ATATATTTTATAAAA TAGACCACGCATACCTATCTATAAAC GGACAAT GTTTATAAATGAGTTTGCATGGTCTT GAATTGTATTAAATT TERM 1918 1927345 - 1927291 - T 91 -11 -3.81279 | opp_overlap 1927291, overlap 1927289 ATATTTTATAAAATA GACCACGCATACCTATCTATAAAC GGACAAT GTTTATAAATGAGTTTGCATGGTC TTGAATTGTATTAAA USA300HOU_1791 1928046 - 1927405 - | hypothetical protein USA300HOU_1792 1928345 - 1928160 - | hypothetical protein TERM 1919 1928328 - 1928287 - G 100 -15.5 -5.00616 | opp_overlap 1928284 1928301 1928323 TGCTCTTTTAAAAAA TGGCTATGAAAAATTCTAT CCCC ATAGATTTCTTCATAGCCA ATGCTAATTTGTTTC USA300HOU_1793 1928523 - 1928347 - | hypothetical protein USA300HOU_1794 1928917 - 1928534 - | hypothetical protein TERM 1920 1929905 - 1929921 + H 73 -8.7 -3.06636 | opp_overlap 1929894, overlap 1929904 1929908 CATAGCACCAGTCAT CAGTGGC TGT GCCATTG CGTTTTTTTCTTATT TERM 1921 1930017 - 1929989 - H 100 -14.7 -5.1356 | opp_overlap 1929989 CCGCACCAATAAAAA TCCCCTCACTACC GCA AATAGTGAGGGGA TTGGTGTATAAGTAA TERM 1922 1929989 - 1930017 + H 100 -13.3 -3.32993 | opp_overlap 1929989 CCGCACCAATAAAAA TCCCCTCACTA CCGCAAA TAGTGAGGGGA TTGGTGTATAAGTAA TERM 1923 1930159 - 1930191 + G 88 -7.9 -5.18355 | opp_overlap 1930168 1930173, overlap 1930160 GATGCGTTCAATATC CGAAGTTAAGCAA CTAAACA TTGCTTAACTTCC TTTTTACTTTTTGGA TERM 1924 1930160 - 1930190 + G 90 -11.4 -3.69386 | opp_overlap 1930168 1930173, overlap 1930159 ATGCGTTCAATATCC GAAGTTAAGCAA CTAAACA TTGCTTAACTTC CTTTTTACTTTTTGG USA300HOU_1796 1930085 - 1930186 + | hypothetical protein USA300HOU_1797 1931007 - 1930534 - | hypothetical protein TERM 1925 1931366 - 1931379 + r 87 -3.9 -5.85011 | TTCACGTCACAAGTT CAATA TAAA TATTG TTTTTTTACTTTTTA USA300HOU_1798 1935247 - 1931432 - | hypothetical protein TERM 1926 1931527 - 1931541 + g 72 -2.8 -5.29782 | opp_overlap 1931538, overlap 1931527 1931529 ACCACCATTCTTGTC TATCTC GAA GAGAAA TTTTTTCTAGATATA TERM 1927 1931608 - 1931590 - G 73 -9 -3.21218 | opp_overlap 1931576 1931590, overlap 1931594 ATTTTTTAGTATTAA GAAAGTTT AAT AAACTTTC TTTTTTAATAAGTAA TERM 1928 1931590 - 1931608 + g 95 -9 -5.1675 | opp_overlap 1931590 1931594, overlap 1931576 ATTTTTTAGTATTAA GAAAGTTT AAT AAACTTTC TTTTTTAATAAGTAA TERM 1929 1934765 - 1934795 + g 83 -10 -3.85786 | opp_overlap 1934765 1934768, overlap 1934768 TTGTTCTAAATTAGA GAATATTTTTTTGA AAT TCAAATAAATATTC TTTGCGTATTTTGAT TERM 1930 1934795 - 1934765 - G 77 -10 -3.00525 | opp_overlap 1934765 1934768, overlap 1934768 TTGTTCTAAATTAGA GAATATTTTTTTGA AAT TCAAATAAATATTC TTTGCGTATTTTGAT TERM 1931 1935271 - 1935284 + r 86 -5.3 -5.54079 | opp_overlap 1935263, overlap 1935263 TTAAATACTCTTTTT TAGAG TGTC CTCTA TTTTTTGCTTTTTAC TERM 1932 1935441 - 1935431 - R 72 -2.6 -5.40474 | opp_overlap 1935431 AGGTCTCTAAAAAAA TATT CGG AATA TATATGATTATTTAA TERM 1933 1935920 - 1935931 + r 74 -3 -5.36441 | TGATACGCATTTTGT TGAA AGAC TTCA TTTTTTGTCTCAAAA hsdS2 1937592 - 1936393 - | type I site-specific deoxyribonuclease specificity subunit hsdM2 1939141 - 1937585 - | type I site-specific deoxyribonuclease methyltransferase subunit TERM 1934 1937911 - 1937929 + g 84 -6.7 -5.1101 | CGATAAATAGTACGT TGTCGTC TTGTT GGCGACA TTTTTTAAATACTAA TERM 1935 1939373 - 1939415 + r 74 -7.9 -3.7948 | opp_overlap 1939374, overlap 1939374 TCATACATAAATAAA ACCAATCAACAATTGAGTT GGTGA AAATCAATCGTTGATTGGC TTTGATGCATATTAA TERM 1936 1939414 - 1939374 - R 100 -13.6 -5.07523 | opp_overlap 1939373 1939374 CATACATAAATAAAA CCAATCAACAATTGAGTT GGTGA AAATCAATCGTTGATTGG CTTTGATGCATATTA TERM 1937 1939374 - 1939414 + r 85 -11.4 -2.87206 | opp_overlap 1939374, overlap 1939373 CATACATAAATAAAA CCAATCAACAATTGAGTT GGTGA AAATCAATCGTTGATTGG CTTTGATGCATATTA splF 1940223 - 1939504 - | serine protease SplF splE 1941090 - 1940374 - | serine protease SplE splD 1941967 - 1941248 - | serine protease SplD splC 1942807 - 1942088 - | serine protease SplC splB 1943587 - 1942865 - | serine protease SplB TERM 1938 1943479 - 1943490 + g 72 -5.8 -4.40132 | TTGTGACATTATTTT CTGC TTTG GCAG TTTGTTGTACTTCCT splA 1944419 - 1943712 - | serine protease SplA TERM 1939 1944517 - 1944499 - H 72 -6.2 -4.27026 | TTTTAAATAAAAATA TTAATTAA ATA TTAATTAA CCACTTATTAACGTT TERM 1940 1945017 - 1945034 + H 90 -6.3 -5.58179 | TGGATTAGTTTCACT GACATGT TGAT GCATGTC TTTTTTGTTCTGATA TERM 1941 1945531 - 1945519 - g 82 -3.4 -5.59534 | opp_overlap 1945519 AAGCAGAAGAAAAAA TGAC AGATG GTCA ATTATGGAAAAAAGT USA300HOU_1807 1945383 - 1945949 + | hypothetical protein TERM 1942 1946139 - 1946168 + T 100 -10.1 -4.85433 | opp_overlap 1946147, overlap 1946142 CAGCGTTTGGCTTGC TTAGACGACATGT TCGC GCATGTCGTCTTA TTTTTACATTTATAT TERM 1943 1946142 - 1946165 + T 100 -11.8 -4.50298 | opp_overlap 1946147, overlap 1946139 CGTTTGGCTTGCTTA GACGACATGT TCGC GCATGTCGTC TTATTTTTACATTTA epiG 1947121 - 1946423 - | lantibiotic epidermin immunity protein F epiE 1947879 - 1947118 - | epidermin ABC transporter membrane protein epiF 1948568 - 1947876 - | epidermin ABC transporter ATP-binding protein epiP 1949964 - 1948591 - | lantibiotic epidermin serine protease TERM 1944 1949452 - 1949485 + g 80 -6.9 -4.62783 | opp_overlap 1949481, overlap 1949456 ACCTGTTTCCTCCGG TTCAGTACCTCTAAA ACCG TTTAAAGGTACTAAA TTTTTAGAATCAGTC TERM 1945 1949706 - 1949722 + g 73 -3.8 -5.05228 | TTGAACATGTGGCAT TGATAT ATTTA ATATCA TTTTTATAGTTTGCT epiD 1950492 - 1949974 - | lantibiotic epidermin biosynthesis protein EpiD epiC 1951752 - 1950508 - | lantibiotic epidermin biosynthesis protein EpiC TERM 1946 1950539 - 1950551 + g 72 -2.7 -5.36364 | GCATTGGTCCAATTT TTTTC ATT GAGAA TTTTTGTATTTTTCA epiB 1954738 - 1951745 - | lantibiotic epidermin biosynthesis protein EpiB TERM 1947 1954680 - 1954668 - G 75 -4.9 -4.89063 | GTATTTAAAAATAAA TTGAA AAA TTCAA CTGATAATAAAGGTG TERM 1948 1954766 - 1954795 + r 75 -9.4 -2.9155 | opp_overlap 1954767 1954771, overlap 1954771 CACATATTTGAATAG ACAAATAGAGCC CTTTCA GGCTCTATTTGC TGTAATCTTAACAGC TERM 1949 1954794 - 1954767 - R 100 -13.6 -3.10053 | opp_overlap 1954766 1954771, overlap 1954771 ACATATTTGAATAGA CAAATAGAGCCC TTTC AGGCTCTATTTG CTGTAATCTTAACAG TERM 1950 1954790 - 1954771 - R 84 -8.6 -4.21142 | opp_overlap 1954766 1954771, overlap 1954767 ATTTGAATAGACAAA TAGAGCCC TTTC AGGCTCTA TTTGCTGTAATCTTA TERM 1951 1954771 - 1954790 + r 76 -7.9 -3.88731 | opp_overlap 1954771 1954767, overlap 1954766 ATTTGAATAGACAAA TAGAGCC CTTTCA GGCTCTA TTTGCTGTAATCTTA epiA 1954946 - 1954803 - | lantibiotic epidermin EpiA USA300HOU_1816 1955155 - 1955021 - | hypothetical protein TERM 1952 1955675 - 1955645 - R 100 -9.9 -4.74453 | gap 1, opp_overlap 1955646 1955651, overlap 1955647 TAATATATTTAAAAA GACAAATAGAGCCC TTTC AGGCTCTATTTG-C TGTATCCTTAACAAC TERM 1953 1955646 - 1955675 + r 75 -9.4 -3.00298 | opp_overlap 1955645 1955647, overlap 1955651 AATATATTTAAAAAG ACAAATAGAGCC CTTTCA GGCTCTATTTGC TGTATCCTTAACAAC TERM 1954 1955674 - 1955647 - R 100 -13.6 -3.97602 | opp_overlap 1955646 1955651, overlap 1955645 ATATATTTAAAAAGA CAAATAGAGCCC TTTC AGGCTCTATTTG CTGTATCCTTAACAA TERM 1955 1955651 - 1955670 + r 76 -7.9 -3.91027 | opp_overlap 1955647 1955645, overlap 1955646 ATTTAAAAAGACAAA TAGAGCC CTTTCA GGCTCTA TTTGCTGTATCCTTA lukD 1957051 - 1956068 - | leukotoxin LukD lukE 1957988 - 1957053 - | leukotoxin LukE TERM 1956 1958642 - 1958663 + H 82 -6.1 -5.2853 | opp_overlap 1958658, overlap 1958658 GCATGGTCGTTGACT TATTTATAT TATA ATATAAATA TTTTATTTTTCAATA USA300HOU_1819 1958871 - 1959326 + | hypothetical protein USA300HOU_1820 1959339 - 1959980 + | hypothetical protein TERM 1957 1960842 - 1960876 + F 100 -16.1 -3.34227 | opp_overlap 1960842 1960846, overlap 1960846 AAATTACAAATGCAA TAAAGGCTAAAGTAA ACTAA TTACTTTAGCCTTTA TTAATAATTTAGTCG TERM 1958 1960876 - 1960842 - f 100 -16.1 -3.36128 | opp_overlap 1960842 1960846, overlap 1960846 AAATTACAAATGCAA TAAAGGCTAAAGTAA ACTAA TTACTTTAGCCTTTA TTAATAATTTAGTCG TERM 1959 1960846 - 1960872 + F 100 -12.5 -4.30833 | opp_overlap 1960842 1960846, overlap 1960842 TACAAATGCAATAAA GGCTAAAGTAA ACTAA TTACTTTAGCC TTTATTAATAATTTA TERM 1960 1960872 - 1960846 - f 100 -12.5 -4.30933 | opp_overlap 1960846 1960842, overlap 1960842 TACAAATGCAATAAA GGCTAAAGTAA ACTAA TTACTTTAGCC TTTATTAATAATTTA TERM 1961 1960912 - 1960885 - f 71 -8.6 -2.82895 | overlap 1960884 GCCTTTATTAATAAT TTAGTCGAATTT ATTA AAAATCGACTAA CTCCTGGTTATGCTA TERM 1962 1960973 - 1960983 + F 72 -2.6 -5.42198 | opp_overlap 1960973, overlap 1960965 CGATTGATTATATTA TAAT ATT ATTA TTTTATTTTTTCAAG TERM 1963 1961235 - 1961217 - f 75 -6 -4.75372 | ATTATTCATCAAAAA TTAGTCAC ATT GTGGCTAA AAAATTTTAAATGGA TERM 1964 1961365 - 1961330 - g 93 -6.9 -5.46706 | opp_overlap 1961331 1961332, overlap 1961332 AGTCCAAAATAAAAA TAGCGCTTAAAATGG GTAAAA CCAATTTAAGCGCCT TTACGGAAGGTAAGG TERM 1965 1961331 - 1961364 + G 73 -8.2 -3.53811 | opp_overlap 1961330 1961332, overlap 1961332 GTCCAAAATAAAAAT AGCGCTTAAAATGG GTAAAA CCAATTTAAGCGCC TTTACGGAAGGTAAG TERM 1966 1961332 - 1961363 + G 83 -11.7 -2.72144 | opp_overlap 1961330 1961332, overlap 1961331 TCCAAAATAAAAATA GCGCTTAAAATGG GTAAAA CCAATTTAAGCGC CTTTACGGAAGGTAA TERM 1967 1961363 - 1961332 - g 100 -11.7 -4.3613 | opp_overlap 1961332 1961331, overlap 1961330 TCCAAAATAAAAATA GCGCTTAAAATGG GTAAAA CCAATTTAAGCGC CTTTACGGAAGGTAA USA300HOU_1821 1961275 - 1961406 + | hypothetical protein TERM 1968 1961505 - 1961484 - T 100 -9.5 -5.8187 | opp_overlap 1961483 1961484 1961486 TATGTAATAAAAAAA CAGAAGCGA TATT TCACTTCTG CTTGTATGACTCCTA TERM 1969 1961591 - 1961578 - T 70 -8.1 -3.14881 | TAACCGCTTGACCAA GGAGC CATG GCTCC ACAGGTAGGACTCGA TERM 1970 1961704 - 1961724 + T 70 -6.1 -4.19506 | opp_overlap 1961704 1961706 GAATCGAACCCACAA CATCAGCTT GGA AGGCTGAGG TTTTGCCATTAAACT TERM 1971 1962425 - 1962375 - T 100 -14.4 -2.92439 | opp_overlap 1962383 1962418, overlap 1962383 AATAGTGTTAAAGCA TTTAAAAAGGTATAGGAGTTATAA AGT TTACAACGCCTATACCTTCTGAAA AAGAAATTATAAAAG TERM 1972 1962383 - 1962417 + T 93 -11.6 -3.28791 | opp_overlap 1962375 1962383 TAAAGCATTTAAAAA GGTATAGGAGTTATAA AGT TTACAACGCCTATACC TTCTGAAAAAGAAAT TERM 1973 1962417 - 1962383 - T 100 -13.8 -4.72386 | opp_overlap 1962383, overlap 1962375 TAAAGCATTTAAAAA GGTATAGGAGTTATAA AGT TTACAACGCCTATACC TTCTGAAAAAGAAAT TERM 1974 1962555 - 1962538 - T 70 -6.3 -4.12599 | AACAATTTTTCAAAA TCAGCAG CTAC CTACTGA CACAACATAACACAA USA300HOU_1822 1963137 - 1962583 - | hypothetical protein TERM 1975 1963215 - 1963268 + r 73 -8.5 -3.49924 | opp_overlap 1963217, overlap 1963217 TAATTGTAAAATAAA AACACCTTAATTAGAAATGTTATAT CGCA AAGTGACATTTCTAATTAAAGTGTA TTGTCATCATTTCAA TERM 1976 1963217 - 1963266 + r 87 -11.1 -3.31802 | opp_overlap 1963217, overlap 1963215 ATTGTAAAATAAAAA CACCTTAATTAGAAATGTTATAT CGCA AAGTGACATTTCTAATTAAAGTG TATTGTCATCATTTC TERM 1977 1963266 - 1963217 - R 100 -9 -5.46706 | opp_overlap 1963217 1963215 ATTGTAAAATAAAAA CACCTTAATTAGAAATGTTA TATCGCAAAG TGACATTTCTAATTAAAGTG TATTGTCATCATTTC hemG 1964860 - 1963460 - | protoporphyrinogen oxidase TERM 1978 1964440 - 1964455 + g 76 -2.5 -5.53991 | CAGAAATGTCACCAT CCTGC ATTTGA GTAGG TTTTTTTAATAAATC hemH 1965807 - 1964884 - | ferrochelatase hemE 1966902 - 1965865 - | uroporphyrinogen decarboxylase USA300HOU_1826 1967002 - 1966892 - | hypothetical protein TERM 1979 1966997 - 1966974 - G 75 -6.9 -4.16842 | opp_overlap 1966978, overlap 1966978 CGTATTTTCAATAAA TAAATGTCA TAAAAC TGACATTTA ATCATAGAACTATTT USA300HOU_1827 1967165 - 1967668 + | RNAIII-activating protein TRAP USA300HOU_1828 1969015 - 1967792 - | ABC transporter ATP-binding protein USA300HOU_1829 1969748 - 1969008 - | ABC transporter ATP-binding protein USA300HOU_1830 1969882 - 1970304 + | HIT histidine triad cell-cycle regulator USA300HOU_1831 1970446 - 1970811 + | hypothetical protein TERM 1980 1970888 - 1970924 + F 79 -5.5 -5.03314 | gap 2, opp_overlap 1970887 1970888 AAATGCCAAATAAAC GAGATGACATTAGAAAT TAGAT ATTTCT--TGTCATCTC TTTTTTAAAACTCAA USA300HOU_1832 1971544 - 1972101 + | hypothetical protein prsA2 1972306 - 1973268 + | peptidylprolyl isomerase TERM 1981 1973321 - 1973271 - T 100 -20.6 -3.42702 | opp_overlap 1973276, overlap 1973276 CATGAGCCAATAACA CAAAACCGAGCGACCGTGGTTCAA AAA TCATACCACGGCCGCTCGGTTTTT TCGCATTAAAAATCG TERM 1982 1973276 - 1973316 + T 100 -15.5 -5.09426 | opp_overlap 1973271 1973276 GCCAATAACACAAAA CCGAGCGACCGTGGT TCAAAAATCAT ACCACGGCCGCTCGG TTTTTTCGCATTAAA TERM 1983 1973316 - 1973276 - T 100 -20.5 -4.79752 | opp_overlap 1973276, overlap 1973271 GCCAATAACACAAAA CCGAGCGACCGTGGTTCAA AAA TCATACCACGGCCGCTCGG TTTTTTCGCATTAAA TERM 1984 1973375 - 1973334 - T 100 -12.5 -4.72272 | gap 1, opp_overlap 1973332 1973330 1973334 TTTTCGCATTAAAAA TCGGACAGATGAGCTCA-TG TTT CAGTATACTCATCTGTCCGA TATCTTTTAATTCTT TERM 1985 1973334 - 1973375 + T 73 -8.1 -3.51229 | gap 1, opp_overlap 1973334, overlap 1973332 1973330 TTTTCGCATTAAAAA TCGGACAGATGAG-CTCATG TTT CAGTATACTCATCTGTCCGA TATCTTTTAATTCTT USA300HOU_1834 1974330 - 1973389 - | 3'-5' exoribonuclease YhaM TERM 1986 1973452 - 1973465 + g 89 -6.7 -5.72616 | opp_overlap 1973452 TATTTTATCTGTAAA CTGAC CCTT GTCAG TTTTTTTATATGCCT TERM 1987 1974251 - 1974267 + g 70 -7.3 -3.89346 | TCTTTACCTTGTGCT GTTACAC CCT GTGTAGC TTTATGCACTAAGAA USA300HOU_1835 1977263 - 1974327 - | hypothetical protein TERM 1988 1975871 - 1975883 + g 72 -4.9 -4.7657 | opp_overlap 1975871 TTAAAAGAATAAACG TTGTT CGT AACAA TTTTTGACGTTTTTG sbcD 1978449 - 1977253 - | DNA repair exonuclease USA300HOU_1837 1978838 - 1978740 - | hypothetical protein TERM 1989 1978788 - 1978804 + g 73 -9.5 -2.93073 | TTCAAAAATTTCAGT CGGAAAT GCA ATTTCCG TAGTTATTAACACCG TERM 1990 1979082 - 1979050 - R 85 -7.1 -4.87318 | opp_overlap 1979050 1979049 TTCAAAATGCAAAAA GGAAGTTAGGACA CGTTTAC TAGCCTAACTTCC GTTACTGAATGCATC TERM 1991 1979178 - 1979148 - R 100 -11.2 -5.79588 | opp_overlap 1979146 1979148 TCAAAACTAAAAAAA CTACCCACAAAGTC TCG GACTCTGTCGGCAG TCTATTCCTCTATTT USA300HOU_1838 1979565 - 1979221 - | hypothetical protein TERM 1992 1979317 - 1979328 + g 70 -4.4 -4.77896 | ATTCATTAATGCAGA GATG TTTT CATC TTTTTCAATTGCTTG USA300HOU_1839 1980758 - 1979634 - | hypothetical protein USA300HOU_1840 1980829 - 1980755 - | hypothetical protein USA300HOU_1841 1981401 - 1980937 - | transcriptional regulator USA300HOU_1842 1982380 - 1981757 - | response regulator USA300HOU_1843 1983514 - 1982402 - | sensor histidine kinase rluA2 1983677 - 1984498 + | pseudouridylate synthase TERM 1993 1984688 - 1984698 + T 70 -5.4 -4.63184 | opp_overlap 1984688 ACATCCTTGGATAAT GACT TGT AGTC TTTTTCAACTGCGTT TERM 1994 1984942 - 1984901 - T 100 -9 -5.4492 | GACATAGACAAAAAA TAAAGCTTGAACACTACA TCTACC TGTAATGCCCAAACTTTA TTTTATATTAATATT fumC 1986346 - 1984961 - | fumarate hydratase TERM 1995 1985399 - 1985411 + g 71 -6.3 -4.09685 | opp_overlap 1985399 ACCAGGCATAATTGA TGAAC CTG GTTCA TTTTCAGGGATAGAA USA300HOU_1846 1986937 - 1986542 - | hypothetical protein USA300HOU_1847 1987056 - 1987418 + | hypothetical protein TERM 1996 1987550 - 1987531 - T 78 -9.3 -3.35696 | CTACAAACAATGTAA GTTGGGG AAACAG CCCCAAC ACTGAAACTAGCAGA TERM 1997 1987619 - 1987595 - T 100 -10.1 -5.64304 | opp_overlap 1987595 GAATATAATAAAAAA GCTAGGTAACA AAA TGCTACCTAAC TTCATATTCAAGATA USA300HOU_1848 1987866 - 1987714 - | hypothetical protein USA300HOU_1849 1988490 - 1987891 - | hypothetical protein TERM 1998 1988324 - 1988335 + g 74 -3 -5.38326 | opp_overlap 1988324 CTAAAATCAACAGCA TGTT TTTC AACA TTTTTCTTTAATTCA USA300HOU_1850 1989119 - 1988649 - | TrmH family RNA methyltransferase USA300HOU_1851 1990266 - 1989124 - | iron-sulfur (Fe-S) cluster-binding protein TERM 1999 1989278 - 1989288 + g 79 -5.4 -5.1925 | AACGGTCTTTCATCT GTTG TTG CAAC TTTTTTCAATTCTGG TERM 2000 1990343 - 1990389 + r 79 -9.1 -3.43049 | gap 1, opp_overlap 1990343 TTTTAATAATAAAAA GCTTGAATATATGATAT-AACT TTGT GGTGCGTATCATATATTCAAGC TTCGTTAGGTTGTTA TERM 2001 1990389 - 1990343 - R 93 -8.4 -5.29445 | gap 1, opp_overlap 1990343 TTTTAATAATAAAAA GCTTGAATATATGATATA-AC TTTGTG GTGCGTATCATATATTCAAGC TTCGTTAGGTTGTTA glnQ 1991130 - 1990402 - | glutamate ABC transporter ATP-binding protein USA300HOU_1853 1992574 - 1991117 - | amino acid ABC transporter ATP-binding protein TERM 2002 1991930 - 1991942 + g 84 -6.3 -5.11836 | opp_overlap 1991930 1991929 TTTCACATTGGAAAT TCCTA ATT TAGGA TTTTGTTTTAAATAT TERM 2003 1992752 - 1992784 + r 82 -10.7 -2.61656 | opp_overlap 1992752, overlap 1992751 1992749 1992747 AAATCAATCAAAAAA GCGCTACTATCAATA TCT TATTGACAGTAACGC CTATATTTATCATAT TERM 2004 1992784 - 1992752 - R 100 -15.1 -5.33921 | opp_overlap 1992752 1992751 1992749 1992747 AAATCAATCAAAAAA GCGCTACTATCAATA TCT TATTGACAGTAACGC CTATATTTATCATAT USA300HOU_1854 1993893 - 1992832 - | hypothetical protein TERM 2005 1994285 - 1994306 + H 82 -4.4 -5.52384 | overlap 1994288 TCTTCATCTTTTATG GTGGGAAG GTAAAA CTTCCTGC TTTTTTTAATACACA TERM 2006 1995701 - 1995671 - g 72 -4.7 -4.75967 | gap 1 AAGGAGAAAAAAGAA GACAACCAAGCCCA ATAA TGGACT-GGCCGCC TAATAATAAAAACTC USA300HOU_1855 1994386 - 1995747 + | IS1181 transposase TERM 2007 1995805 - 1995783 - T 100 -13.6 -4.48987 | opp_overlap 1995787, overlap 1995787 GGTGGAGAACCAAAA GAAACCTTGT TTT ACAAGGTTTC TAATACGTTATGTTA TERM 2008 1995801 - 1995787 - T 91 -8.6 -4.80487 | opp_overlap 1995787, overlap 1995783 GAGAACCAAAAGAAA CCTTGT TTT ACAAGG TTTCTAATACGTTAT TERM 2009 1995787 - 1995801 + T 82 -8.6 -3.99806 | opp_overlap 1995787 1995783 GAGAACCAAAAGAAA CCTTGT TTT ACAAGG TTTCTAATACGTTAT TERM 2010 1995955 - 1995942 - T 90 -6.7 -5.64421 | ATGGTAAACAAAAAA CTTCC CTTT GGAAG CAATTATGGAGCGGA TERM 2011 1997894 - 1997910 + T 78 -9.5 -3.22475 | overlap 1997897 TCGAACCCGCGACCC CAACCTT GGC AAGGTTG TATTCTACCGCTGAA TERM 2012 2001099 - 2001118 + T 90 -10.8 -3.66803 | opp_overlap 2001098 2001097 GAGTGTCCTACAACC CCAACAAG CAAG CTTGTTGG TTTGGGCTCTTCCCG TERM 2013 2001475 - 2001502 + T 70 -5.6 -4.28115 | AACGCGTTATTAATC TTGTGAGTGTTC TTTC GAACACTAGCGA TTATTTCTTATGAAT TERM 2014 2002785 - 2002803 + T 71 -8.8 -2.75963 | overlap 2002784 AGTTTCCAATGACCC TCCACGGT TGA GCCGTGGG CTTTCACATCAGACT TERM 2015 2003216 - 2003237 + T 83 -10.3 -3.25079 | overlap 2003214 AAGACCGTCTTTCAC TTTTGAACC ATGC GGTTCAAAA TATTATCCGGTATTA TERM 2016 2003462 - 2003478 + T 73 -5.9 -4.66833 | overlap 2003463 ATACTAAATAATGTT TGTAACT TAT AGTTACG TTTTTGGAATTAACG TERM 2017 2003824 - 2003793 - T 71 -4.6 -4.69326 | opp_overlap 2003802 AGAGTCAACATAAAA CAACACTTATTTTT GTTT AAAAATTACTGTTG AAGGGATTATTTTCT TERM 2018 2004088 - 2004063 - T 95 -7 -6.02345 | opp_overlap 2004063 2004083 TAAGCATAAAAAAAA GTTAAACAAC TTTCAT GTCGTTTAAC TTCTTAAATATTACG USA300HOU_1856 2004607 - 2004161 - | Fur family transcriptional regulator USA300HOU_1857 2005654 - 2004704 - | D-3-phosphoglycerate dehydrogenase bcp 2006115 - 2005660 - | peroxiredoxin hemL2 2006196 - 2007485 + | glutamate-1-semialdehyde aminotransferase TERM 2019 2007556 - 2007570 + F 71 -7.2 -3.80189 | opp_overlap 2007565, overlap 2007565 AGATTCATTTTATAT CGTTAA CTA TTAACG TTTAACTTGATATGT TERM 2020 2008256 - 2008267 + G 71 -3 -5.06585 | opp_overlap 2008256, overlap 2008250 ATAATTCATTAAATA TATC CTCA GATA TTTTTATGTGGTTTA USA300HOU_1860 2007727 - 2008872 + | hypothetical protein TERM 2021 2008985 - 2008947 - T 84 -7 -5.22943 | gap 1, opp_overlap 2008947 ATTAAATTTAAAAAA GCAGTAAGATTATTTTC AATTAA GAAAATC-TCTTACTGC TTTTTCTATGTTATG TERM 2022 2008947 - 2008985 + T 83 -7 -5.12474 | gap 1, opp_overlap 2008947 ATTAAATTTAAAAAA GCAGTAAGATTATTTTC AATTAA GAAAATC-TCTTACTGC TTTTTCTATGTTATG USA300HOU_1861 2010799 - 2009063 - | ABC transporter ATP-binding protein TERM 2023 2010644 - 2010627 - G 70 -7.1 -3.76641 | opp_overlap 2010626 ATGGCAATAGTTAAA TGATGAA CTTT TTCATCA GTCGTTAGTGCGTGG USA300HOU_1862 2011632 - 2011090 - | hypothetical protein mutY 2012971 - 2011934 - | A/G-specific DNA glycosylase USA300HOU_1864 2013123 - 2014100 + | hypothetical protein TERM 2024 2014193 - 2014139 - T 100 -10.2 -5.31456 | opp_overlap 2014146, overlap 2014146 TTAATCTATAAAAAA TGAACAACCGGGCAGAATGAAAATCA AAA CGATTTTTACTCTGTCCGGTTTTTTA ATGTAAAACTATGAA TERM 2025 2014146 - 2014186 + T 100 -14.2 -5.21709 | opp_overlap 2014139 2014146 ATAAAAAATGAACAA CCGGGCAGAATGAAAATC AAAAC GATTTTTACTCTGTCCGG TTTTTTAATGTAAAA TERM 2026 2014186 - 2014146 - T 100 -12.7 -4.08846 | opp_overlap 2014146, overlap 2014139 ATAAAAAATGAACAA CCGGGCAGAATGAAAATCA AAA CGATTTTTACTCTGTCCGG TTTTTTAATGTAAAA USA300HOU_1865 2015197 - 2014361 - | teichoic acid ABC transporter ATP-binding/membrane protein USA300HOU_1866 2016723 - 2015206 - | teichoic acid ABC transporter ATP-binding protein USA300HOU_1867 2017052 - 2016738 - | hypothetical protein USA300HOU_1868 2017848 - 2017030 - | recombination regulator RecX TERM 2027 2017168 - 2017178 + g 72 -2.6 -5.29782 | GTACTTCTTTCGATT TTTA TTA TAAA TTTTTTCTAAATCTC TERM 2028 2017428 - 2017446 + g 76 -4.6 -5.14163 | overlap 2017422 2017421 CAATGATATTTGGTT CTATACCA AGT TGATATAG TTTTTGTTGATAAAT TERM 2029 2017992 - 2017961 - R 100 -9.6 -5.46657 | opp_overlap 2017973 GATGCTAACAAAAAA TCACACTATCATCT TTTA AAATGAAAGTGTGA TTACAAGCAAATCTG USA300HOU_1869 2018918 - 2018109 - | glycosyltransferase TERM 2030 2019172 - 2019130 - R 100 -9.4 -4.8667 | overlap 2019109 2019135 TATATTTTATAAAAA TAAAAGACCATCCCTATTAA ATG CCAATAGAGACGACCTTTTA TTTGTTATTCATTTA TERM 2031 2019167 - 2019135 - R 81 -4.9 -5.35224 | overlap 2019130 TTTATAAAAATAAAA GACCATCCCTATTAA ATG CCAATAGAGACGACC TTTTATTTGTTATTC USA300HOU_1870 2019774 - 2019259 - | C56 family endopeptidase PfpI USA300HOU_1871 2020066 - 2019905 - | hypothetical protein USA300HOU_1872 2020290 - 2021441 + | hypothetical protein USA300HOU_1873 2022231 - 2021701 - | hypothetical protein pepS 2023577 - 2022321 - | M29 family aminopeptidase USA300HOU_1875 2023795 - 2023580 - | hypothetical protein USA300HOU_1876 2023991 - 2023869 - | hypothetical protein USA300HOU_1877 2023975 - 2024391 + | protein-tyrosine-phosphatase USA300HOU_1878 2024398 - 2024673 + | hypothetical protein TERM 2032 2026026 - 2026015 - g 74 -3 -5.34365 | overlap 2026006 TGACAATAATAAAAA TCAT TATA ATGA GAACACTAGATACGA USA300HOU_1879 2024951 - 2026168 + | ribonuclease BN TERM 2033 2026227 - 2026170 - T 100 -23.4 -4.18668 | gap 2, opp_overlap 2026170 2026181, overlap 2026181 TTAAAAAAGACTAAA CACCAACAAAACAGAGGTTTTCGCTAAT GATT ATT-GCGAAAACCTCTGTTTT-TTGGTG TCTATTTGATGTTAT TERM 2034 2026170 - 2026227 + T 100 -23.4 -3.35191 | gap 2, opp_overlap 2026170 2026181, overlap 2026181 TTAAAAAAGACTAAA CACCAACAAAACAGAGGTTTTCGCTAAT GATT ATT-GCGAAAACCTCTGTTTT-TTGGTG TCTATTTGATGTTAT TERM 2035 2026217 - 2026181 - T 100 -16.2 -4.81163 | gap 1, opp_overlap 2026170 2026181, overlap 2026170 TAAACACCAACAAAA CAGAGGTTTTCGCTAAT GATT ATT-GCGAAAACCTCTG TTTTTTGGTGTCTAT TERM 2036 2026181 - 2026217 + T 100 -16.2 -5.25893 | gap 1, opp_overlap 2026181 2026170, overlap 2026170 TAAACACCAACAAAA CAGAGGTTTTCGCTAAT GATT ATT-GCGAAAACCTCTG TTTTTTGGTGTCTAT vraR 2026913 - 2026284 - | response regulator VraR vraS 2027946 - 2026903 - | sensor histidine kinase VraS USA300HOU_1882 2028644 - 2027943 - | hypothetical protein TERM 2037 2028584 - 2028549 - G 72 -4.8 -4.8269 | opp_overlap 2028554 TAGAACGAGTAAAAA GCCAATTTTTTCAAAA AATA TGTAGTAAAAATTGGC AATAATCATTAATGC USA300HOU_1883 2029045 - 2028659 - | hypothetical protein TERM 2038 2029225 - 2029190 - R 100 -9.8 -4.51097 | overlap 2029192 TTAATTATTATAAAA CAGTTCCGAAACCAAT ATGA ATAGGCTCCGGAACTA AATGATGTTCATACT TERM 2039 2029223 - 2029192 - R 89 -10.2 -3.85857 | overlap 2029190 AATTATTATAAAACA GTTCCGAAACCAAT ATGA ATAGGCTCCGGAAC TAAATGATGTTCATA map 2030020 - 2029262 - | methionine aminopeptidase TERM 2040 2030127 - 2030151 + H 70 -8.8 -2.57463 | overlap 2030126 AGTGAGACATAGTGT GATAAAGAAA AAATA TTTCTTTATC GTTGTACCCCAACTT TERM 2041 2030237 - 2030253 + H 72 -8 -3.68024 | TGCACATTATCGTAA GCTGAC TTTTC GTCAGC TTCTGTGTTGGGGCC TERM 2042 2030598 - 2030608 + G 77 -3.2 -5.41143 | CAGAACAATTAAAAC TGGT ATT GCCA TTTTTTTAACAGCTG USA300HOU_1885 2030548 - 2031534 + | hypothetical protein USA300HOU_1886 2031835 - 2031545 - | hypothetical protein TERM 2043 2031658 - 2031677 + g 77 -9.3 -3.27907 | TTCGAAATTCTCTGT GTTGGGG CCCACA CCCCAAC TTGCATTGTCTGTAG TERM 2044 2031690 - 2031713 + g 71 -6.8 -4.15044 | opp_overlap 2031696, overlap 2031692 2031696 AACTTGCATTGTCTG TAGAAATTGG GAAT CCAATTTCTC TTTGTTGGGGCCCAC TERM 2045 2031692 - 2031711 + g 80 -9.4 -3.6761 | opp_overlap 2031696, overlap 2031690 2031696 CTTGCATTGTCTGTA GAAATTGG GAAT CCAATTTC TCTTTGTTGGGGCCC TERM 2046 2031717 - 2031736 + g 77 -9.3 -3.27907 | ATCCAATTTCTCTTT GTTGGGG CCCACA CCCCAAC TTGCATTGTCTGTAG TERM 2047 2031749 - 2031772 + g 71 -6.8 -4.15222 | opp_overlap 2031755, overlap 2031751 2031755 AACTTGCATTGTCTG TAGAAATTGG GAAT CCAATTTCTC TTTGTTGGGGCCCCT TERM 2048 2031751 - 2031770 + g 80 -9.4 -3.6761 | opp_overlap 2031755, overlap 2031749 2031755 CTTGCATTGTCTGTA GAAATTGG GAAT CCAATTTC TCTTTGTTGGGGCCC TERM 2049 2031817 - 2031805 - G 88 -7.7 -5.1925 | opp_overlap 2031804 CTAGAATTGAAAAAA GCTTG TTA CAAGC GCATTTTCGTTCAGT USA300HOU_1887 2032476 - 2032024 - | hypothetical protein TERM 2050 2032240 - 2032226 - G 73 -8.6 -3.15078 | opp_overlap 2032226 2032225, overlap 2032224 TATATTTCAGTAACA GGATTG TCG CAATCC ATATGTTTCAAATTG USA300HOU_1888 2032576 - 2032466 - | hypothetical protein TERM 2051 2032548 - 2032587 + g 80 -9.4 -3.5697 | opp_overlap 2032548, overlap 2032546 ACTAGAACAAAAAAA CACACATCAATTTGGTTG TTTC CATCCAAAATAATGTGTG TGTTTATACATATAT TERM 2052 2032587 - 2032548 - G 100 -11.6 -5.89921 | opp_overlap 2032548 2032546 ACTAGAACAAAAAAA CACACATCAATTTGGTTG TTTC CATCCAAAATAATGTGTG TGTTTATACATATAT USA300HOU_1889 2033393 - 2032662 - | adenosylcobyric acid synthase (glutamine-hydrolyzing) murE2 2034708 - 2033395 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 2053 2033557 - 2033574 + g 70 -7.1 -3.86266 | TTCAACCTCTGCTAA CTTCAAT CGCA ATTGAAG TTCTTCTGCTCGTGT USA300HOU_1891 2035000 - 2035500 + | ferritin TERM 2054 2035595 - 2035634 + T 85 -5.9 -5.46698 | gap 1, opp_overlap 2035609 TATTATTTTGCTTTA CGGAGATCACTAGATTCA TTTTC TGAATC-ATTGATCTGCG TTTTTTCATTTTCAA USA300HOU_1892 2035674 - 2035582 - | hypothetical protein USA300HOU_1893 2035889 - 2036443 + | DNA-directed DNA polymerase III USA300HOU_1894 2037551 - 2036511 - | DNA-directed DNA polymerase IV TERM 2055 2036839 - 2036852 + g 74 -5.3 -4.78753 | GTTGCAAATGTGCGT TCAGT CCCT ACTGA TTTTCTTACTCTTGA USA300HOU_1895 2038358 - 2037828 - | hypothetical protein USA300HOU_1896 2039889 - 2038528 - | TrmA family RNA methyltransferase USA300HOU_1897 2040917 - 2039970 - | putative lipid kinase TERM 2056 2041098 - 2041120 + r 74 -6.3 -4.41348 | overlap 2041101 ACTTGCACATTATTG TAAGCTGAC AGAAA GTCAGCTTC TTTGTTTGGGGGCCC TERM 2057 2041101 - 2041117 + r 79 -8 -4.32678 | overlap 2041098 TGCACATTATTGTAA GCTGAC AGAAA GTCAGC TTCTTTGTTTGGGGG TERM 2058 2041159 - 2041175 + r 72 -8 -3.68024 | opp_overlap 2041153 TGCACATTATTGTAA GCTGAC AGAAA GTCAGC TTCTATGTTGGGGCC TERM 2059 2041221 - 2041209 - R 90 -7.7 -5.1925 | opp_overlap 2041208 2041202 2041209 CTAGAATTGAAAAAA GCTTG TTA CAAGC GTATTTTCTTTCAGT USA300HOU_1899 2041646 - 2041500 - | hypothetical protein TERM 2060 2041653 - 2041614 - G 100 -11.7 -4.17296 | opp_overlap 2041614, overlap 2041618 TTCTATAGATATAAA TAAACCCTCGATTGC ATCTAAGTCA GCAATCAAGGGTTTA TTTTTTAAATCTTCA TERM 2061 2041614 - 2041653 + g 100 -9.5 -5.1615 | opp_overlap 2041614 2041618 TTCTATAGATATAAA TAAACCCTCGATTGC ATCTAAGTCA GCAATCAAGGGTTTA TTTTTTAAATCTTCA TERM 2062 2041649 - 2041618 - G 86 -8.1 -4.66625 | opp_overlap 2041614, overlap 2041614 ATAGATATAAATAAA CCCTCGATTGC ATCTAAGTCA GCAATCAAGGG TTTATTTTTTAAATC TERM 2063 2041657 - 2041685 + r 70 -6.2 -4.05861 | overlap 2041675 ATCAAGGGTTTATTT TTTAAATCTTCA TAGTT TGATGATTTAAA TTATCTTTTATCTAA gatB2 2043113 - 2041686 - | aspartyl/glutamyl-tRNA amidotransferase subunit B gatA2 2044583 - 2043126 - | glutamyl-tRNA(Gln) amidotransferase subunit A TERM 2064 2044513 - 2044525 + g 86 -2.7 -5.9362 | ATATCTTTAACAACA TCAGA TGG TTTGA TTTTTTTGTCTTTTA gatC2 2044887 - 2044585 - | aspartyl/glutamyl-tRNA amidotransferase subunit C putP 2045254 - 2046792 + | SSS family major sodium/proline symporter TERM 2065 2046857 - 2046818 - T 100 -11.7 -5.09521 | opp_overlap 2046818 TTAACAAATTAAAAA GGTACTAATGTTAATCA AAATTA TGACTAACATTGGTACC TTTTTATTATCTTTA TERM 2066 2046818 - 2046857 + T 100 -11.7 -5.33331 | opp_overlap 2046818 TTAACAAATTAAAAA GGTACTAATGTTAATCA AAATTA TGACTAACATTGGTACC TTTTTATTATCTTTA camS 2048086 - 2046881 - | pheromone lipoprotein CamS USA300HOU_1905 2050096 - 2048093 - | DNA ligase (NAD(+)) TERM 2067 2048858 - 2048844 - G 73 -8.6 -3.20723 | TTTGGATTAATGCAA CGAAGT GCT ACTTCG CCTTCAATACGTACT pcrA 2052292 - 2050100 - | ATP-dependent DNA helicase PcrA pcrB 2052981 - 2052289 - | geranylgeranylglyceryl phosphate synthase-like protein TERM 2068 2053068 - 2053080 + r 75 -4.9 -5.14563 | TGAAATTTAAGTTCT TTTAC TCT GTAAA TTTTTTCGTGAAAAA TERM 2069 2053137 - 2053097 - R 93 -8.6 -5.00616 | opp_overlap 2053097 2053123, overlap 2053127 TTTTTCGTGAAAAAA CAATGATTATCTACCT TATTAGTGC AGATAGATAACCATTG TTTATCGTTCATTTA USA300HOU_1908 2053455 - 2053153 - | hypothetical protein TERM 2070 2053517 - 2053552 + r 85 -7.8 -4.69048 | TTAATCTATTAAAGT GTAGCGATTTATATTT TATT AAATCTGAATCGTTAC TTTATTTAATTTTAT purB 2054859 - 2053564 - | adenylosuccinate lyase TERM 2071 2053884 - 2053862 - G 70 -7 -3.78962 | TCAAATACAGTTAAA CGGTCCACAA TAT TTGTGAAACG ATTCAATGCATAATC TERM 2072 2056400 - 2056386 - g 70 -4.3 -4.68132 | CAATATATAAATAAA CTTGA GAATT TCAAG ATAAGAGAAACTCAA TERM 2073 2056725 - 2056703 - g 72 -6.2 -4.37199 | AGTAGAATCAAGAAA TGGTATGCAC GCA GGGCATGCCA TGGCAGTTGTTGGGA USA300HOU_1910 2055720 - 2056886 + | C47 family staphopain protease USA300HOU_1911 2056917 - 2057243 + | hypothetical protein TERM 2074 2057412 - 2057379 - T 79 -8.3 -3.89411 | gap 2, opp_overlap 2057379, overlap 2057370 TTAAAATATTAAGAA CCCCCAGCATATGCT TTATAT AGC-T-TGCTGGGGG TTTCTCATACAATAT TERM 2075 2057379 - 2057412 + T 79 -8.3 -3.97388 | gap 2, opp_overlap 2057370 2057379 TTAAAATATTAAGAA CCCCCAGCATATGCT TTATAT AGC-T-TGCTGGGGG TTTCTCATACAATAT TERM 2076 2057498 - 2057457 - T 78 -6.7 -4.57482 | opp_overlap 2057459 2057486, overlap 2057459 2057486 GCATGTATAAACAAA TAGGCTATTCAAAGTAAAA TTAC TCAAACTTTGAATAGCCTT TCCTCTTCAAATAGT TERM 2077 2057496 - 2057459 - T 86 -9.3 -3.89305 | opp_overlap 2057459 2057486, overlap 2057457 2057486 ATGTATAAACAAATA GGCTATTCAAAGTAAAA TTAC TCAAACTTTGAATAGCC TTTCCTCTTCAAATA TERM 2078 2057459 - 2057496 + T 82 -8.7 -3.93038 | opp_overlap 2057459 2057457 2057486, overlap 2057486 ATGTATAAACAAATA GGCTATTCAAAGT AAAATTACTCAA ACTTTGAATAGCC TTTCCTCTTCAAATA USA300HOU_1912 2057708 - 2057535 - | hypothetical protein USA300HOU_1913 2058291 - 2057689 - | hypothetical protein nadE 2059383 - 2058562 - | NAD synthetase TERM 2079 2058809 - 2058819 + g 71 -6.8 -4.15044 | opp_overlap 2058809, overlap 2058807 TACGCTAATAATTGA CGAC CTT GTCG TTTATTCAAACCAAA USA300HOU_1915 2060845 - 2059376 - | nicotinate phosphoribosyltransferase USA300HOU_1916 2061029 - 2062105 + | nitric-oxide synthase, oxygenase subunit TERM 2080 2062675 - 2062685 + G 77 -5.4 -4.8622 | TTGATCAAAATGCGA CATC ATT GATG TTTTTAATTACACCA pheA 2062125 - 2062919 + | prephenate dehydratase TERM 2081 2062956 - 2063003 + T 76 -5 -5.11389 | opp_overlap 2062958 2062960, overlap 2062960 AATTTAAATAAAATA AAGAGTCAACCAAGGATTAA AATAGGAA TCCATCCTTGGTTGACTTTC TTTTGTTTGTATTGT TERM 2082 2063001 - 2062958 - T 88 -7.6 -4.96996 | opp_overlap 2062956 2062960, overlap 2062960 TTTAAATAAAATAAA GAGTCAACCAAGGATTAA AATAGGAA TCCATCCTTGGTTGACTT TCTTTTGTTTGTATT TERM 2083 2062999 - 2062960 - T 95 -10.2 -4.08474 | opp_overlap 2062956 2062960, overlap 2062958 TAAATAAAATAAAGA GTCAACCAAGGATTAA AATAGGAA TCCATCCTTGGTTGAC TTTCTTTTGTTTGTA TERM 2084 2062960 - 2062999 + T 88 -8 -5.00611 | opp_overlap 2062960 2062958, overlap 2062956 TAAATAAAATAAAGA GTCAACCAAGGATTAA AATAGGAA TCCATCCTTGGTTGAC TTTCTTTTGTTTGTA USA300HOU_1918 2064671 - 2063109 - | DASS family divalent anion:sodium (Na+) symporter USA300HOU_1919 2065973 - 2064876 - | hypothetical protein USA300HOU_1920 2066345 - 2066905 + | nicotinamidase ppaC 2066958 - 2067887 + | putative manganese-dependent inorganic pyrophosphatase TERM 2085 2067931 - 2067971 + T 95 -7.3 -5.67283 | opp_overlap 2067931 GTTGTATTTAACTAA CAGTTCATT-AAAGTAGAA TTTAT TTC-ACTTTCAATGAACTG TTTTTTATTTACGTT USA300HOU_1922 2068255 - 2068082 - | hypothetical protein aldH1 2068307 - 2069686 + | aldehyde dehydrogenase TERM 2086 2069705 - 2069683 - T 70 -5 -4.56775 | opp_overlap 2069676, overlap 2069687 AGCTTTCTTTAAAAA TTAATTTTTG AGA CAAAAATAAA CCATGCTTCCATAAT USA300HOU_1924 2069792 - 2069676 - | hypothetical protein TERM 2087 2069768 - 2069782 + g 75 -5 -4.94902 | ATACACAAATTTTTT GGAAAC ATG GTTTTC TTTTTATCATGATTA USA300HOU_1925 2070834 - 2069806 - | hypothetical protein TERM 2088 2070612 - 2070596 - G 71 -6.7 -4.1891 | GCTTTTGAAGACAAA CATTTAT TTA ATAAATG CAATTCACCATTGTC USA300HOU_1926 2071104 - 2071505 + | hypothetical protein TERM 2089 2072048 - 2071993 - T 100 -13.1 -3.91032 | gap 1, opp_overlap 2072000, overlap 2072000 GAAGTATTGTATAAA TAGAGAACAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTGTTTTTTA GGGATTTATGTCCCA TERM 2090 2072000 - 2072041 + T 100 -15.6 -5.07107 | gap 1, opp_overlap 2072000 2071993 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTAGGGATTTA TERM 2091 2072041 - 2072000 - T 100 -15.6 -3.80279 | gap 1, opp_overlap 2072000, overlap 2071993 TGTATAAATAGAGAA CAGCAGTAAGAT-ATTTTC TAATT GAAAATTATCTTACTGCTG TTTTTTAGGGATTTA USA300HOU_1927 2072251 - 2072078 - | hypothetical protein TERM 2092 2072835 - 2072825 - g 85 -6.8 -5.23016 | opp_overlap 2072825 AAAGAATGGAAAAAA CGTG TCC CACG TTTCGATATAGATGT USA300HOU_1928 2072702 - 2073742 + | C40 family peptidase TERM 2093 2073788 - 2073744 - T 85 -8.3 -4.67607 | opp_overlap 2073746 2073749 2073781, overlap 2073747 TTGCCAACAAATAAA TAA-CACCGATATTAGAGAAA TTATG CTTC-CTAATATCGGTGCTTA CATCCTTTATTTATT TERM 2094 2073784 - 2073747 - T 100 -11.6 -4.43668 | gap 1, opp_overlap 2073746 2073749 2073781, overlap 2073744 CCAACAAATAAATAA CACCGATATTAGAGAAA TTATG CTTC-CTAATATCGGTG CTTACATCCTTTATT USA300HOU_1929 2074641 - 2073799 - | hypothetical protein TERM 2095 2073867 - 2073878 + g 74 -3 -5.2853 | overlap 2073862 2073873 TTTTCCCAACTTTAC CATT AGTA AATG TTTTATTTTTAACTA TERM 2096 2073977 - 2073996 + g 74 -6.4 -4.28018 | ATATCTCCTTGTTTA GTAGAAGC TTTT GCATCTAC TTTTGATGGCATGTT USA300HOU_1930 2075195 - 2074638 - | hypothetical protein USA300HOU_1931 2075779 - 2075255 - | hypothetical protein USA300HOU_1932 2075900 - 2076463 + | hypothetical protein TERM 2097 2076478 - 2076522 + T 100 -8.8 -5.12068 | opp_overlap 2076481 2076482, overlap 2076481 2076482 AATTTACAATAAGAC AAACTTTGAGGTTGGGAA AATTTAAAA TTCCCAACCTCAAAATTA TTTTTATTAAATGTC TERM 2098 2076519 - 2076481 - T 100 -12.7 -4.37544 | opp_overlap 2076481 2076478 2076482, overlap 2076482 TTACAATAAGACAAA CTTTGAGGTTGGGAA AATTTAAAA TTCCCAACCTCAAAA TTATTTTTATTAAAT TERM 2099 2076481 - 2076519 + T 100 -10.5 -4.64495 | opp_overlap 2076481 2076482, overlap 2076478 2076482 TTACAATAAGACAAA CTTTGAGGTTGGGAA AATTTAAAA TTCCCAACCTCAAAA TTATTTTTATTAAAT TERM 2100 2076482 - 2076518 + T 100 -14 -3.3707 | opp_overlap 2076481 2076482, overlap 2076481 2076478 TACAATAAGACAAAC TTTGAGGTTGGGAA AATTTAAAA TTCCCAACCTCAAA ATTATTTTTATTAAA TERM 2101 2076518 - 2076482 - T 100 -14 -3.21442 | opp_overlap 2076482 2076481 2076478, overlap 2076481 TACAATAAGACAAAC TTTGAGGTTGGGAA AATTTAAAA TTCCCAACCTCAAA ATTATTTTTATTAAA USA300HOU_1933 2077269 - 2076529 - | hypothetical protein USA300HOU_1934 2078141 - 2077269 - | ABC transporter ATP-binding protein TERM 2102 2077612 - 2077637 + g 71 -7.7 -3.56704 | opp_overlap 2077609, overlap 2077609 TCTTCTAACTTATGA CTTGATATTAG AATT CTCATATCAAG TTCATTTACTAAAGA TERM 2103 2078018 - 2078037 + g 72 -2.9 -5.28683 | gap 1, opp_overlap 2078018 TCATTACTTTCATAA CGGTTGTT TTACC AACA-CCG TTTTTTCCTATTAAT USA300HOU_1935 2078818 - 2078138 - | hypothetical protein TERM 2104 2078834 - 2078846 + r 74 -6.3 -4.37067 | TTAAAAACCTTCTTC CATCA ATT TGATG TTTTCATGATATTTA USA300HOU_1936 2079715 - 2078819 - | ABC transporter ATP-binding protein TERM 2105 2079311 - 2079333 + g 74 -3.4 -5.25906 | TGCTAGTGATAATTT CATTTTCATC CCA GTCGAAAATG TTTTTATTGATTTAT TERM 2106 2079390 - 2079423 + g 76 -4.6 -5.10029 | opp_overlap 2079381 TAAAATTCAAATACT TGATGGTCCCATTT ACGATA AAAAGGGGCAATCA TTTTTTCAAGTTGCT USA300HOU_1937 2080167 - 2079712 - | GntR family transcriptional regulator USA300HOU_1938 2080532 - 2080356 - | hypothetical protein TERM 2107 2080759 - 2080725 - R 100 -16.6 -2.89981 | opp_overlap 2080728, overlap 2080728 CAGAATTATACTACA CAACCCCAAGTCTGGT ACC AGCAGACTTGGGGTTA TTTATGTGTGTAGGA TERM 2108 2080756 - 2080728 - R 100 -16.1 -3.58766 | opp_overlap 2080728, overlap 2080725 AATTATACTACACAA CCCCAAGTCTGGT ACC AGCAGACTTGGGG TTATTTATGTGTGTA TERM 2109 2080728 - 2080756 + r 100 -16.1 -4.2028 | opp_overlap 2080725 2080728 AATTATACTACACAA CCCCAAGTCTGGT ACC AGCAGACTTGGGG TTATTTATGTGTGTA USA300HOU_1939 2080873 - 2080775 - | hypothetical protein USA300HOU_1940 2081073 - 2082359 + | hypothetical protein TERM 2110 2082370 - 2082403 + T 95 -6.2 -5.93252 | GATAATTAATTTCAA CCAATAATCTGA TGAGTATGAC TCGGATTATTGG TTTTTTATTTTTAAA TERM 2111 2082522 - 2082562 + T 70 -5.7 -4.30719 | gap 2, opp_overlap 2082522 AACAAAATCAAAAAA TCGGACAGAT-GAAA-AGT AAAAA ACTTTTTCTATCAGTCCGA TTTATTATAGAACCA TERM 2112 2082562 - 2082522 - T 88 -5.7 -5.52347 | gap 2, opp_overlap 2082522 AACAAAATCAAAAAA TCGGACAGAT-GAAA-AGT AAAAA ACTTTTTCTATCAGTCCGA TTTATTATAGAACCA TERM 2113 2082664 - 2082641 - T 100 -11 -4.39571 | opp_overlap 2082641 TCTACAAATGTAAAA GGCACCCCAC GATT GTGAGATGCC TTATTATAAAATTAA TERM 2114 2082853 - 2082897 + T 71 -6 -4.46267 | overlap 2082863 TTATCCCTTGATCAT TTGCCATTGCTGATTTAAGT TTTAT ACTTAAATCATTAATTGTAA TTTTGCTTGCATTAT TERM 2115 2082863 - 2082887 + T 76 -8.8 -3.53814 | overlap 2082853 ATCATTTGCCATTGC TGATTTAAGT TTTAT ACTTAAATCA TTAATTGTAATTTTG mapW2 2084738 - 2082984 - | cell surface protein MapW2 TERM 2116 2085494 - 2085537 + H 88 -7.6 -4.88067 | opp_overlap 2085496 TGTTTGTGTGGAATG TACACCCCAAAAGCTAGACT GAAA AATCTATTTTTTGAGGTGTA TTTTTATAGGTAAAT USA300HOU_1944 2085696 - 2085875 + | hypothetical protein USA300HOU_1945 2086110 - 2085955 - | hypothetical protein TERM 2117 2086498 - 2086471 - R 72 -8.5 -3.25824 | opp_overlap 2086476, overlap 2086476 TATTATCTAGAAAAT TAAAACCACCC GTAAAA GGGTGGTTTTT TTAATATTTACTTTT TERM 2118 2086476 - 2086493 + r 100 -8.4 -5.66989 | opp_overlap 2086471 2086476 TCTAGAAAATTAAAA CCACCC GTAAAA GGGTGG TTTTTTTAATATTTA TERM 2119 2086493 - 2086476 - R 87 -8.4 -4.73108 | opp_overlap 2086476, overlap 2086471 TCTAGAAAATTAAAA CCACCC GTAAAA GGGTGG TTTTTTTAATATTTA USA300HOU_1946 2086849 - 2086499 - | hypothetical protein TERM 2120 2087008 - 2087029 + H 71 -8.8 -2.73364 | opp_overlap 2087008 AGAAAAACAAAAAAA GGTAAGCA CCGAAA TGCTTACC TACTTCCCATAAACA TERM 2121 2087029 - 2087008 - H 100 -9.5 -6.23317 | opp_overlap 2087008 AGAAAAACAAAAAAA GGTAAGCAC CGAA ATGCTTACC TACTTCCCATAAACA TERM 2122 2087231 - 2087246 + H 70 -9 -2.61912 | opp_overlap 2087231, overlap 2087230 TATAGCACAAAAAAA CTAGCC CGAA GGCTAG CTTATGAATAGATGA TERM 2123 2087246 - 2087231 - H 100 -9 -5.69473 | opp_overlap 2087230 2087231 TATAGCACAAAAAAA CTAGCC CGAA GGCTAG CTTATGAATAGATGA chp 2087534 - 2087983 + | chemotaxis-inhibiting protein CHIPS TERM 2124 2088022 - 2088069 + TF 100 -12.4 -2.96452 | gap 1, opp_overlap 2088030, overlap 2088024 2088026 2088030 TAGATATTTCTTTTT TATATAAAGGTTTGGC-AGACAT TTC ATAACTTGCCAAACCTTTATATA TCTAATTATCAAACT TERM 2125 2088024 - 2088067 + TF 79 -10.6 -3.03474 | gap 1, opp_overlap 2088030, overlap 2088022 2088026 2088030 GATATTTCTTTTTTA TATAAAGGTTTGGC-AGACAT TTC ATAACTTGCCAAACCTTTATA TATCTAATTATCAAA TERM 2126 2088026 - 2088065 + TF 73 -8.8 -3.07104 | gap 1, opp_overlap 2088030, overlap 2088024 2088022 2088030 TATTTCTTTTTTATA TAAAGGTTTGGC-AGACAT TTC ATAACTTGCCAAACCTTTA TATATCTAATTATCA TERM 2127 2088061 - 2088030 - Tf 74 -7.4 -4.03234 | gap 1, opp_overlap 2088030 2088026 2088024 2088022 TCTTTTTTATATAAA GGTTTGGCA-GACAT TTC ATAACTTGCCAAACC TTTATATATCTAATT TERM 2128 2088649 - 2088621 - Tf 75 -4.6 -5.16133 | gap 1, overlap 2088624 2088625 ATTATAACATAAAAA GCAC-CCCGTAAA CTAT TATACGGGAATGC TAAAGTCATATATAC TERM 2129 2088732 - 2088711 - Tf 78 -3 -5.58179 | TATCATAAGAAAAAA CACCCA GTGACATGCT TGGGTG AACAAGGATAGATGT TERM 2130 2088801 - 2088786 - Tf 86 -5.4 -5.58179 | CATCATAACAAAAAA CTAGCC CGAA AGCTAG CTATAACATACAATC TERM 2131 2088891 - 2088866 - Tf 100 -12.7 -5.84432 | TATAACATAAAAAAA TAGGCAAGTAC CGAA GTACCTGCCTA AAAAAGGATTATCCA sak 2089554 - 2089063 - | staphylokinase TERM 2132 2089566 - 2089582 + Gr 89 -6.7 -5.4433 | GCATGGCGCTTCCTC CAAATAT AAT ATATTTG TTTTTATTTATCTCT USA300HOU_1950 2089457 - 2089609 + | hypothetical protein ami 2090500 - 2089745 - | N-acetylmuramoyl-L-alanine amidase USA300HOU_1952 2090766 - 2090512 - | holin TERM 2133 2090725 - 2090704 - G 70 -2.3 -5.33405 | gap 1 TTGAGCAAATAAAAA GATAGCTGAC AAT ATC-GCTACC CAAAATGATTTTTGT TERM 2134 2090814 - 2090797 - R 95 -7.7 -5.48213 | opp_overlap 2090797 2090795 TACCCAAAATAAAAA GACGACT AATA AGCCGTC TATTTGATATTTATA TERM 2135 2090885 - 2090860 - R 100 -10.5 -5.07275 | TTATATATAGAAAAA GGGCAACATGC GCAA ACATGTTACCC TAATGAGCCCGTTAA TERM 2136 2090946 - 2090980 + r 74 -2.3 -5.5604 | gap 1, opp_overlap 2090961 AAATTAATAACCATT TAACCATCG-AAAC CAGCCAAA GTTAGCGATGGTTA TTTTTTATTGCTTAA USA300HOU_1953 2091112 - 2090978 - | hypothetical protein TERM 2137 2091220 - 2091201 - R 100 -8.6 -5.52807 | AACAATAAATAAAAA GTCAGTAC CGAA GCACTGAC TAAAACTTATTTACA USA300HOU_1954 2091600 - 2091304 - | hypothetical protein USA300HOU_1955 2091945 - 2091658 - | hypothetical protein TERM 2138 2092002 - 2092016 + r 79 -5 -5.28281 | opp_overlap 2091982 AAAGATTACTCTTCC TCAGCA CAT TGTTGA TTTTCTTTATTTTCT USA300HOU_1956 2092144 - 2091992 - | hypothetical protein USA300HOU_1957 2095919 - 2092134 - | hypothetical protein TERM 2139 2095280 - 2095294 + g 71 -5.7 -4.61873 | CATTTTCGGGTCCCA CAGCA ATTAA TGCTG TTTTGATTTCTGACA USA300HOU_1958 2097419 - 2095935 - | hypothetical protein TERM 2140 2097364 - 2097346 - G 82 -7.4 -4.6008 | opp_overlap 2097346 AAAACATAATTAAAA GAGGGTAT TTC AAACCCTC TTTCGACATACAACC TERM 2141 2097346 - 2097364 + g 71 -7.4 -3.57144 | opp_overlap 2097346 AAAACATAATTAAAA GAGGGTAT TTC AAACCCTC TTTCGACATACAACC USA300HOU_1959 2101945 - 2097416 - | bacteriophage tail length tape measure protein TERM 2142 2102004 - 2101979 - R 100 -11.3 -5.51165 | AAAAGTTCAAAAAAA TAACCCTAACC AAAC GGTTAAGGTTA AAATGCATCAATTAA USA300HOU_1960 2102136 - 2102002 - | hypothetical protein USA300HOU_1961 2102540 - 2102190 - | hypothetical protein TERM 2143 2102591 - 2102572 - R 88 -7.8 -4.87803 | opp_overlap 2102552 2102574, overlap 2102574 TATTTTCAAATAAAA TAGAGGGG TTGT CCCCTCTT ATGCTTCTACATTTA TERM 2144 2102574 - 2102589 + r 85 -10.4 -3.57441 | opp_overlap 2102572 2102574, overlap 2102552 TTTTCAAATAAAATA GAGGGG TTGT CCCCTC TTATGCTTCTACATT TERM 2145 2102589 - 2102574 - R 95 -10.4 -4.05678 | opp_overlap 2102552 2102574, overlap 2102572 TTTTCAAATAAAATA GAGGGG TTGT CCCCTC TTATGCTTCTACATT USA300HOU_1962 2103500 - 2102856 - | hypothetical protein TERM 2146 2103545 - 2103524 - R 70 -4.3 -5.00616 | opp_overlap 2103525, overlap 2103525 CCTCCTCGTAAAAAA TGCCCTCGT AGAC ACGAGTGCT TCTATATGTTTTAAA TERM 2147 2103544 - 2103525 - R 72 -7.8 -3.60048 | opp_overlap 2103525, overlap 2103524 CTCCTCGTAAAAAAT GCCCTCGT AGAC ACGAGTGC TTCTATATGTTTTAA TERM 2148 2103525 - 2103544 + r 74 -7.8 -3.76289 | opp_overlap 2103525 2103524 CTCCTCGTAAAAAAT GCCCTCGT AGAC ACGAGTGC TTCTATATGTTTTAA USA300HOU_1963 2103908 - 2103504 - | hypothetical protein USA300HOU_1964 2104309 - 2103905 - | hypothetical protein USA300HOU_1965 2104668 - 2104306 - | hypothetical protein USA300HOU_1966 2104936 - 2104652 - | hypothetical protein USA300HOU_1967 2105210 - 2104926 - | hypothetical protein TERM 2149 2105051 - 2105073 + g 71 -5.6 -4.58698 | opp_overlap 2105051 TCAGCTTATCTAAAG GTACGATATA AAC TTTGTCGTAC TTATTTTTGATTTGA USA300HOU_1968 2106375 - 2105230 - | hypothetical protein USA300HOU_1969 2107136 - 2106399 - | endopeptidase ClpP USA300HOU_1970 2108307 - 2107120 - | bacteriophage portal protein USA300HOU_1971 2109984 - 2108323 - | terminase large subunit TERM 2150 2109573 - 2109584 + g 73 -4.4 -4.92777 | AAACGGTTCTGATTT CATC AAAC GATG TTTTTGCTTGATCTT USA300HOU_1972 2110325 - 2109981 - | hypothetical protein USA300HOU_1973 2110754 - 2110455 - | hypothetical protein TERM 2151 2110884 - 2110862 - R 100 -10.6 -5.38054 | opp_overlap 2110862 2110860 CCTCATAAATAAAAA GACACATCAC ATA GTGATGCGCC TCTTGTTCATGCGTC USA300HOU_1974 2111402 - 2110986 - | hypothetical protein USA300HOU_1975 2111630 - 2111430 - | hypothetical protein USA300HOU_1976 2111779 - 2111630 - | hypothetical protein USA300HOU_1977 2112162 - 2111776 - | hypothetical protein USA300HOU_1978 2112365 - 2112159 - | hypothetical protein USA300HOU_1979 2112598 - 2112362 - | hypothetical protein dut 2113177 - 2112644 - | dUTP diphosphatase USA300HOU_1981 2113412 - 2113170 - | hypothetical protein USA300HOU_1982 2113638 - 2113402 - | hypothetical protein USA300HOU_1983 2114002 - 2113631 - | hypothetical protein USA300HOU_1984 2114253 - 2114011 - | hypothetical protein USA300HOU_1985 2114625 - 2114257 - | hypothetical protein TERM 2152 2114571 - 2114593 + g 78 -7.1 -4.45738 | ATTCCATTTCAGATT TGGTAAACC TATAT GGTTTATCA TTTATTGTTACAATC rusA 2115042 - 2114638 - | crossover junction endodeoxyribonuclease RusA USA300HOU_1987 2115269 - 2115051 - | hypothetical protein dnaD2 2116169 - 2115276 - | DNA replication protein DnaD ssb2 2116669 - 2116199 - | single-stranded DNA-binding protein TERM 2153 2116701 - 2116690 - R 81 -7.2 -4.66535 | opp_overlap 2116690 AACCTCCAAAATAAA CGGG CGCG CCCG TCACTTTTTGTATTT USA300HOU_1990 2117155 - 2116670 - | hypothetical protein recT 2118288 - 2117368 - | recombination protein RecT TERM 2154 2118170 - 2118186 + g 79 -9.5 -3.39327 | opp_overlap 2118167 2118164, overlap 2118167 GGTGAATAATCATTT GGCAATT CCA AATTGCC TTGTGACTCTAAAAC USA300HOU_1992 2120245 - 2118290 - | hypothetical protein TERM 2155 2119095 - 2119114 + g 77 -5 -5.09762 | TCTTTCGATTTGCTA GCATTGAA TTTC TGCAATGC TTTTTCTCTTGCCAT USA300HOU_1993 2120520 - 2120242 - | hypothetical protein USA300HOU_1994 2120774 - 2120514 - | hypothetical protein USA300HOU_1995 2121074 - 2120814 - | hypothetical protein TERM 2156 2121138 - 2121163 + r 100 -9.1 -5.95946 | GTTAATCGTTTGTCA CTGTTACTTGT TGAC GCAAGTAGCAG TTTTTTTATTCTTCA USA300HOU_1996 2121330 - 2121169 - | hypothetical protein USA300HOU_1997 2121647 - 2121327 - | hypothetical protein USA300HOU_1998 2121706 - 2121936 + | hypothetical protein USA300HOU_1999 2122109 - 2121933 - | hypothetical protein USA300HOU_2000 2122877 - 2122125 - | bacteriophage antirepressor TERM 2157 2122670 - 2122681 + g 81 -5.8 -5.02074 | overlap 2122672 GTGTCATATTGCCTT GAGC TGTT GCTC TTTTTTGAGCGATAG USA300HOU_2001 2122928 - 2123257 + | hypothetical protein USA300HOU_2002 2123461 - 2123246 - | hypothetical protein TERM 2158 2123288 - 2123319 + g 86 -2.8 -5.89921 | overlap 2123294 TATTAAATCGTCTGC GCTAGGCTGCCACC TTCC GGCGGCGGTTTGTC TTTTTTTCTTATAGT TERM 2159 2123294 - 2123313 + g 83 -7 -4.74406 | overlap 2123288 ATCGTCTGCGCTAGG CTGCCACC TTCC GGCGGCGG TTTGTCTTTTTTTCT USA300HOU_2003 2123740 - 2123477 - | transcriptional regulator TERM 2160 2123786 - 2123772 - H 71 -7.2 -3.73873 | opp_overlap 2123772 GTAAACCTAATATAA TACGAA ATT TTCGTA TTGTCAACATTAAAT USA300HOU_2004 2123873 - 2124586 + | transcription regulator USA300HOU_2005 2124602 - 2125534 + | exodeoxyribonuclease TERM 2161 2125565 - 2125553 - g 77 -3.5 -5.55664 | CGATGATCAAAAAAA TTTTT ACA AAAAA GCATGTATTCTTAGT USA300HOU_2006 2125540 - 2125881 + | hypothetical protein USA300HOU_2007 2126085 - 2126267 + | hypothetical protein TERM 2162 2126285 - 2126302 + F 78 -9.9 -3.10715 | opp_overlap 2126285 TTACTAATCAAAAAA CGTCTAC AAGT GTAGACG TTGAATGGTGGTGAG TERM 2163 2126302 - 2126285 - f 100 -9.9 -5.30155 | opp_overlap 2126285 TTACTAATCAAAAAA CGTCTAC AAGT GTAGACG TTGAATGGTGGTGAG USA300HOU_2008 2126345 - 2127058 + | hypothetical protein TERM 2164 2127153 - 2127177 + F 100 -11.5 -5.63504 | opp_overlap 2127152 CTTATAACTATAAGT GGCGTCTGTAT TTT ATACAGGCGTC TTTTTTTATACAATT TERM 2165 2127198 - 2127214 + F 82 -8 -4.40692 | TTATACAATTTTCAT GGGTAG CCCGC CTACCC TTATTATTTTTTGCC int 2127249 - 2128286 + | bacteriophage integrase TERM 2166 2129181 - 2129219 + TF 100 -14.8 -3.70919 | opp_overlap 2129183 2129186, overlap 2129183 2129186 AGTGCTCAACTAACT AATAACTTGCTTCGTTCT AAA AGGACGAAGCGAGTTATA TTGTTAAAATTTGAA TERM 2167 2129217 - 2129183 - Tf 100 -13 -3.45366 | opp_overlap 2129181 2129183 2129186, overlap 2129186 TGCTCAACTAACTAA TAACTTGCTTCGTTCT AAA AGGACGAAGCGAGTTA TATTGTTAAAATTTG TERM 2168 2129183 - 2129217 + TF 100 -17.4 -3.4314 | opp_overlap 2129183 2129186, overlap 2129181 2129186 TGCTCAACTAACTAA TAACTTGCTTCGTTCT AAA AGGACGAAGCGAGTTA TATTGTTAAAATTTG TERM 2169 2129186 - 2129214 + TF 100 -14.7 -3.8372 | opp_overlap 2129183 2129186, overlap 2129183 2129181 TCAACTAACTAATAA CTTGCTTCGTTCT AAA AGGACGAAGCGAG TTATATTGTTAAAAT TERM 2170 2129214 - 2129186 - Tf 89 -10.3 -3.86031 | opp_overlap 2129186 2129183 2129181, overlap 2129183 TCAACTAACTAATAA CTTGCTTCGTTCT AAA AGGACGAAGCGAG TTATATTGTTAAAAT TERM 2171 2129400 - 2129360 - Tf 100 -18.7 -4.35044 | opp_overlap 2129360 2129365, overlap 2129365 CTATTCAAATATAAA TAAAAGTTACCTACTACAT TCT ATGTAGCAGGCAACTTTTA TTACTTATTTCTTTT TERM 2172 2129360 - 2129400 + TF 100 -14.3 -3.72745 | opp_overlap 2129360 2129365, overlap 2129365 CTATTCAAATATAAA TAAAAGTTACCTACTACAT TCT ATGTAGCAGGCAACTTTTA TTACTTATTTCTTTT TERM 2173 2129395 - 2129365 - Tf 100 -14.2 -5.13648 | opp_overlap 2129360 2129365, overlap 2129360 CAAATATAAATAAAA GTTACCTACTACAT TCT ATGTAGCAGGCAAC TTTTATTACTTATTT TERM 2174 2129365 - 2129395 + TF 100 -9.8 -4.85618 | opp_overlap 2129365 2129360, overlap 2129360 CAAATATAAATAAAA GTTACCTACTACAT TCT ATGTAGCAGGCAAC TTTTATTACTTATTT USA300HOU_2011 2130421 - 2129405 - | leukocidin subunit USA300HOU_2012 2130315 - 2130458 + | hypothetical protein USA300HOU_2013 2131498 - 2130443 - | leukocidin subunit USA300HOU_2014 2131870 - 2133156 + | succinyl-diaminopimelate desuccinylase TERM 2175 2133165 - 2133194 + T 78 -4.3 -5.45652 | gap 1 AAAATAAGAACGATG CTGTCAGC-TGC CCTATTC GCGTGCTGGCAG TTTTTTATTGCGAAT USA300HOU_2015 2133275 - 2133177 - | hypothetical protein TERM 2176 2133404 - 2133390 - R 70 -5 -4.66264 | TAAAACTCGTAAAAA CCTTCT CGT AAAAGG AATGGGACATAAATC TERM 2177 2133432 - 2133446 + r 76 -10 -2.60079 | opp_overlap 2133431 2133429 2133432 2133434 ATCCCTAGAAAACAG CAGCTC AAC GAGCTG TAAATTATCAAATAC TERM 2178 2133446 - 2133432 - R 76 -10 -2.87598 | opp_overlap 2133432, overlap 2133431 2133429 2133434 ATCCCTAGAAAACAG CAGCTC AAC GAGCTG TAAATTATCAAATAC TERM 2179 2133506 - 2133473 - R 100 -12.7 -5.08169 | opp_overlap 2133473 ATACATTTGAAAAAA GCTGATTTCTATCAA ATAA TTTATAGAAATCAGC TTTTTTACATTGTCT TERM 2180 2133473 - 2133506 + r 100 -12.7 -5.20154 | opp_overlap 2133473 ATACATTTGAAAAAA GCTGATTTCTATCAA ATAA TTTATAGAAATCAGC TTTTTTACATTGTCT USA300HOU_2016 2134373 - 2133528 - | methyltransferase TERM 2181 2134065 - 2134075 + g 90 -4 -5.80003 | TGGTACATCTAAATC TATC CAT GATA TTTTTTCTTTATTAA USA300HOU_2017 2135346 - 2134435 - | ferrichrome ABC transporter USA300HOU_2018 2135507 - 2136814 + | Trk family K+ transporter ABC protein TERM 2182 2136868 - 2136897 + T 100 -9.5 -4.64861 | opp_overlap 2136875, overlap 2136875 TTAATCTATTACATT AAAAAAACTACCT AAAC AGGTAGTTTTTTA TTTATTTTAGGCCGA TERM 2183 2136875 - 2136890 + T 100 -7.6 -5.88476 | opp_overlap 2136875, overlap 2136868 ATTACATTAAAAAAA CTACCT AAAC AGGTAG TTTTTTATTTATTTT TERM 2184 2136890 - 2136875 - T 95 -7.6 -5.59357 | opp_overlap 2136868 2136875 ATTACATTAAAAAAA CTACCT AAAC AGGTAG TTTTTTATTTATTTT USA300HOU_2019 2138110 - 2137667 - | GNAT family acetyltransferase USA300HOU_2020 2138652 - 2138275 - | hypothetical protein USA300HOU_2021 2139560 - 2138970 - | terminase small subunit TERM 2185 2139255 - 2139267 + g 71 -3.3 -5.11389 | overlap 2139256 GACTAATTGTACTTT GCCAC TTT GTGGA TTTTCTTTATATTCT USA300HOU_2022 2139769 - 2139557 - | hypothetical protein TERM 2186 2140370 - 2140332 - R 81 -4.5 -5.38951 | AATTCATACAAAAAA GACGCCTCCCATAAGTT TAGTC ACCAAATGGAAGACGTC TCGTAATTAAAATAT groEL 2142087 - 2140471 - | chaperonin GroEL TERM 2187 2140581 - 2140558 - G 77 -9 -3.62597 | gap 1, opp_overlap 2140558 2140561 2140565, overlap 2140561 TTCAGTCGTTAAGAA CATTGCTGCAA CAC TTGCAGC-ATG TTGTAATGCTGAGCG TERM 2188 2140558 - 2140581 + g 75 -9 -3.44051 | gap 1, opp_overlap 2140558 2140561, overlap 2140561 2140565 TTCAGTCGTTAAGAA CATTGCTGCAA CAC TTGCAGC-ATG TTGTAATGCTGAGCG TERM 2189 2140579 - 2140561 - G 84 -11.8 -2.63252 | opp_overlap 2140561 2140558 2140565, overlap 2140558 AGTCGTTAAGAACAT TGCTGCAA CAC TTGCAGCA TGTTGTAATGCTGAG TERM 2190 2140561 - 2140579 + g 89 -11.8 -3.29273 | opp_overlap 2140558 2140561, overlap 2140558 2140565 AGTCGTTAAGAACAT TGCTGCAA CAC TTGCAGCA TGTTGTAATGCTGAG TERM 2191 2141638 - 2141665 + g 76 -2.7 -5.46706 | opp_overlap 2141644 TTCTTCATCTGCTGC TGAAATCGCAC CTACTT GCGCAATTTCA TTTTTATTTTCAACT groES 2142447 - 2142163 - | co-chaperonin GroES TERM 2192 2142773 - 2142793 + G 84 -8.3 -4.5287 | AACTTGTTCTATTTT TAATCGCCG CCA CGACGATTA TTTTAATTAATTTAA USA300HOU_2026 2142622 - 2143365 + | hypothetical protein TERM 2193 2143375 - 2143408 + T 95 -6.2 -5.77734 | gap 2, opp_overlap 2143375 CCATAATAAAAAAAA CGAATCACA-C-ACGG ATTA TCGTCGCTGTGATTCG TTTTTATTTTTCTTT TERM 2194 2143408 - 2143375 - T 93 -5.5 -6.17268 | gap 2, opp_overlap 2143375 CCATAATAAAAAAAA CGAATCACA-C-ACG GATTAT CGTCGCTGTGATTCG TTTTTATTTTTCTTT sdrH 2144643 - 2143390 - | Ser-Asp rich fibrinogen/bone sialoprotein bindin protein SdrH TERM 2195 2143766 - 2143777 + g 71 -3 -5.09259 | CCATTTAAATATGCA TTTC CGCT GAAA TTTTGTTTTCGAATA TERM 2196 2145135 - 2145123 - g 74 -2 -5.5074 | CAACTGAACAAAAAA TTGA TAACT TCAA ACATTCATACGGTAC USA300HOU_2028 2144840 - 2145466 + | hypothetical protein TERM 2197 2145595 - 2145575 - f 93 -11.3 -3.4691 | opp_overlap 2145579 ACTTAAGAATAGGAA TACATGAGT AAA ACTCATGTA TAAGAAATACTAATT TERM 2198 2145667 - 2145686 + F 76 -9.4 -3.09273 | opp_overlap 2145671, overlap 2145671 CTTGCATTGTCTGTA GAAATTGG TGTT CCAATTTC TCTATGTTGGGGCCC USA300HOU_2029 2145827 - 2146612 + | amidohydrolase TERM 2199 2146649 - 2146690 + T 100 -14.9 -5.67063 | opp_overlap 2146653 AACACATGTCATGAC TAAACATAGATTTATGAGA GATT TTTCATAAGTCTATGTTTA TTTTTTTATAATAGA USA300HOU_2030 2146789 - 2146688 - | hypothetical protein TERM 2200 2146752 - 2146768 + g 71 -3.1 -5.15117 | AAATGAATGATTTTC TTAATTA AAT TGATTAA TTTTTTGACCTTTTC TERM 2201 2146890 - 2146862 - R 86 -7.4 -5.31275 | CTTCATTACAAAAAA GGCCGCGAGC TTGGGAGGG GCTCACGACC ATACTTATTATTAAG hld 2147343 - 2147209 - | delta-hemolysin TERM 2202 2147389 - 2147399 + H 72 -5.4 -4.69559 | opp_overlap 2147389 2147387 AGTTATATTAAAACA TGCT AAA AGCA TTTATTTTCCAATTT TERM 2203 2147801 - 2147814 + G 83 -8.1 -4.33997 | opp_overlap 2147794 2147790 2147792, overlap 2147798 AGAAGACATGCACAT GGTGC ACAT GCACC TTCTTCTTTTTGGTG agrB 2147579 - 2148148 + | accessory gene regulator protein B agrD 2148145 - 2148285 + | accessory gene regulator protein D agrC 2148310 - 2149602 + | accessory gene regulator protein C agrA 2149621 - 2150337 + | accessory gene regulator protein A USA300HOU_2036 2150409 - 2150516 + | hypothetical protein frk 2151663 - 2150704 - | fructokinase TERM 2204 2150897 - 2150913 + g 74 -6.5 -4.3208 | AATGCATCCCCTGCC CCAGTTG TAT CAACAGG TTTTACCTTATAGCC scrB 2153144 - 2151660 - | sucrose-6-phosphate hydrolase scrR 2154243 - 2153293 - | sucrose operon repressor TERM 2205 2153460 - 2153478 + g 70 -2.4 -5.252 | overlap 2153450 CAAAACCATATATTT GATGTGGT TTC ATAACATC TTTTTTATCAGAATA TERM 2206 2154401 - 2154366 - R 75 -5.6 -4.77165 | gap 1 TTTTGTATAACAAAA TGTCCCAACA-TCAACC TTT AGTTAAATGTCAGGACA ATGAATATTCTATGT amtB 2155676 - 2154426 - | ammonium transporter TERM 2207 2154669 - 2154680 + g 70 -2.2 -5.37593 | opp_overlap 2154657 AAAGCCATTCTCAAT GTCA GGAT TGGC TTTTTTACTTTGGAA USA300HOU_2041 2156108 - 2155884 - | hypothetical protein USA300HOU_2042 2157247 - 2156168 - | hypothetical protein TERM 2208 2157493 - 2157469 - H 81 -5.7 -5.18995 | opp_overlap 2157483 AACATAACAGAAAAA GCCTGAGAC ATACTTA GTCCCAGAC TGTTCTATAATTAAT TERM 2209 2159910 - 2159889 - H 75 -5.9 -4.70515 | opp_overlap 2159889, overlap 2159903 TAGATTCAAAAGAAA TGTTAGAGC AAGC ACTCCAACA TTTTGAAGGAACAAT TERM 2210 2160411 - 2160377 - H 72 -8.1 -3.37205 | opp_overlap 2160377, overlap 2160375 2160373 2160380 CTATAAAAATATACA TAACTCTAACTGTAA AATCG CTATAGTTAGAGTTA TTTTTTTACAAATTT TERM 2211 2160377 - 2160411 + H 100 -9.6 -5.4477 | opp_overlap 2160377 2160375 2160373 2160380 CTATAAAAATATACA TAACTCTAACTGTA AAATCGC TATAGTTAGAGTTA TTTTTTTACAAATTT TERM 2212 2161912 - 2161939 + G 70 -8.4 -3.2963 | ACCTGGAATTGTGTT CACGTCAATGGC AAAT GCCGATGATGTG TTATCAGGCGATAGT mutS2 2160728 - 2162338 + | DNA mismatch repair protein MutS USA300HOU_2044 2163465 - 2162440 - | O-sialoglycoprotein endopeptidase USA300HOU_2045 2163922 - 2163458 - | ribosomal-protein-alanine acetyltransferase USA300HOU_2046 2164557 - 2163895 - | hypothetical protein USA300HOU_2047 2165032 - 2164538 - | hypothetical protein TERM 2213 2165335 - 2165380 + H 70 -5.8 -4.35044 | gap 2, overlap 2165375 TTTTATTATACTCTT TAGGACTCGAA-CG-TTAGTAA ATAT TTACTAAACGCTTTAAGTCCTA TTTCTGTTTGAATGG TERM 2214 2165426 - 2165406 - H 100 -14.1 -3.5764 | opp_overlap 2165392 2165406 AATGGGACTTGTAAA CGTCCCAAT AAT ATTGGGACG TTTTTTTATGTTTTA TERM 2215 2165406 - 2165426 + H 100 -14.1 -5.9362 | opp_overlap 2165406, overlap 2165392 AATGGGACTTGTAAA CGTCCCAAT AAT ATTGGGACG TTTTTTTATGTTTTA ilvD 2165510 - 2167198 + | dihydroxy-acid dehydratase ilvB1 2167226 - 2168995 + | acetolactate synthase large subunit TERM 2216 2169211 - 2169187 - g 76 -3.7 -5.31059 | overlap 2169175 ATATTAATTAAAAAA TTAAAACAACA AAT TAATGTTTTAA CGGTTGAATGCTACG ilvH 2168995 - 2169249 + | acetolactate synthase 1 regulatory subunit TERM 2217 2170018 - 2170002 - g 73 -8.1 -3.54408 | opp_overlap 2169999 GTGTATCGAAATTAA TTCAAAG TGG CTTTGAA ACATTAGTAGAAGCG ilvC 2169386 - 2170390 + | ketol-acid reductoisomerase TERM 2218 2171534 - 2171524 - g 77 -5.4 -4.96501 | overlap 2171520 GCGGACAAAAAGAAA TCTG TTT CAGA TAGAGATATTCATGC leuA2 2170420 - 2171949 + | 2-isopropylmalate synthase TERM 2219 2172064 - 2172093 + G 73 -8.7 -3.21912 | gap 1, opp_overlap 2172064 2172068 ACTTTAATTATCAAA TAGA-GCACCACGA ATT TGGTGGTGCCTCTA TTGATACATTCGGCG TERM 2220 2172093 - 2172064 - g 79 -8.7 -3.84514 | gap 1, opp_overlap 2172064, overlap 2172068 ACTTTAATTATCAAA TAGA-GCACCACGA ATT TGGTGGTGCCTCTA TTGATACATTCGGCG TERM 2221 2172088 - 2172068 - g 79 -9.7 -3.32233 | opp_overlap 2172064, overlap 2172064 TAATTATCAAATAGA GCACCACGA ATT TGGTGGTGC CTCTATTGATACATT leuB 2171952 - 2172998 + | 3-isopropylmalate dehydrogenase leuC 2173012 - 2174382 + | isopropylmalate isomerase large subunit leuD 2174383 - 2174955 + | isopropylmalate isomerase small subunit ilvA2 2174970 - 2176238 + | threonine dehydratase TERM 2222 2176254 - 2176296 + T 90 -7.9 -5.25772 | opp_overlap 2176255, overlap 2176255 CACATAGTAAGAAAA ACAGTCATAAATTGATTTC TAATT GAAATCATCTTATGACTGC TTTTTATTATACTTT TERM 2223 2176295 - 2176255 - T 100 -13.6 -5.17744 | opp_overlap 2176255 2176254 ACATAGTAAGAAAAA CAGTCATAAATTGATTTC TAATT GAAATCATCTTATGACTG CTTTTTATTATACTT TERM 2224 2176255 - 2176295 + T 95 -11.4 -3.73023 | opp_overlap 2176255, overlap 2176254 ACATAGTAAGAAAAA CAGTCATAAATTGATTTC TAATT GAAATCATCTTATGACTG CTTTTTATTATACTT TERM 2225 2176421 - 2176406 - T 100 -9 -5.76633 | TTAGACATAAAAAAA GAGACC TTGC GGTCTC AATGCGGCTCATCGC TERM 2226 2179263 - 2179282 + T 90 -10.8 -3.66803 | opp_overlap 2179262 2179261 GAGTGTCCTACAACC CCAACAAG CAAG CTTGTTGG TTTGGGCTCTTCCCG TERM 2227 2179594 - 2179621 + T 70 -5.6 -4.28115 | AACGCGTTATTAATC TTGTGAGTGTTC TTTC GAACACTAGCGA TTATTTCTTATGAAT TERM 2228 2179799 - 2179772 - T 73 -3.7 -5.27477 | gap 1, overlap 2179774 2179791 2179793 ACTTTAACCAAAAAA TATTTGAATGTT AAATA AACATTCAAA-A CTGAATACAATATGT TERM 2229 2179798 - 2179774 - T 84 -8.8 -4.26777 | overlap 2179772 2179791 2179793 TTTAACCAAAAAATA TTTGAATGTT AAATA AACATTCAAA ACTGAATACAATATG TERM 2230 2180779 - 2180797 + T 71 -8.8 -2.75963 | overlap 2180778 AGTTTCCAATGACCC TCCACGGT TGA GCCGTGGG CTTTCACATCAGACT TERM 2231 2181210 - 2181231 + T 78 -10.3 -2.8092 | AAGACCGTCTTTCAC TTTTGAACC ATGC GGTTCAAAA TATCATCCGGTATTA TERM 2232 2181456 - 2181472 + T 73 -5.9 -4.66833 | overlap 2181457 ATACTAAATAATGTT TGTAACT TAT AGTTACG TTTTTGGAATTAACG TERM 2233 2181563 - 2181583 + T 70 -6.1 -4.19506 | opp_overlap 2181563 2181565 GAATCGAACCCACAA CATCAGCTT GGA AGGCTGAGG TTTTGCCATTAAACT TERM 2234 2182213 - 2182176 - T 83 -7.8 -4.59069 | gap 1, opp_overlap 2182176 ATCATAAGTAGAAAA GCCGAGATTG-CGAAGT ATTAA ATTACGACAATCTCGGC TTTAAACATTTTATA TERM 2235 2182176 - 2182213 + T 83 -10 -3.67737 | gap 1, opp_overlap 2182176 ATCATAAGTAGAAAA GCCGAGATTG-CGAAGT ATTAA ATTACGACAATCTCGGC TTTAAACATTTTATA USA300HOU_2057 2182813 - 2182358 - | hypothetical protein USA300HOU_2058 2184956 - 2182806 - | RNA-binding protein TERM 2236 2185343 - 2185310 - R 79 -5.5 -5.04222 | gap 1 TAATTAAATTAAAAA TACCCCTCGATT-TCA ATT TAATAATCAAGGGATA ATTATATGGATTTTT fliA 2186160 - 2185390 - | RNA polymerase sigma factor SigB rsbW 2186614 - 2186135 - | serine-protein kinase RsbW TERM 2237 2186410 - 2186429 + gr 76 -4.4 -5.05113 | TTTCAAAATATATGT TAATAATG CCCA CATTGTTA TTTTCTTTGTATGCA rsbV 2186942 - 2186616 - | anti-sigma B factor antagonist rsbU 2188062 - 2187061 - | sigma factor B regulator TERM 2238 2187166 - 2187177 + g 74 -3 -5.27399 | AATATCTTGTGGGTG CATA TGTT TATG TTTTTTAATATATTC TERM 2239 2188228 - 2188207 - R 91 -5.3 -5.86332 | gap 1 TTAAGCTAAAAAAAA CTTTAGG-AT GGA ATACCTAAAG CCTAAAAAACTTAAG TERM 2240 2188277 - 2188265 - R 85 -4.9 -5.55769 | TTTTATAATAAAAAA TATGA ATA TCATA ACTGGTATTTGCTAA pemK 2188774 - 2188412 - | PemK family transcriptional regulator TERM 2241 2188624 - 2188664 + g 71 -7.9 -3.68324 | gap 1, opp_overlap 2188627, overlap 2188621 2188627 GTATTTTCGCTTTAT TAATCCTACCAGTTATTG CCGCAA CAATAACTG-TAGGACTA TATTTATTACCAGTA TERM 2242 2188627 - 2188661 + g 75 -9.6 -2.64561 | gap 1, opp_overlap 2188627, overlap 2188624 2188621 TTTTCGCTTTATTAA TCCTACCAGTTATTG CCGCAA CAATAACTG-TAGGA CTATATTTATTACCA TERM 2243 2188661 - 2188627 - G 80 -10.3 -3.14132 | gap 1, opp_overlap 2188627 2188624 2188621 TTTTCGCTTTATTAA TCCTACCAGTTATTGC CGCA ACAATAACT-GTAGGA CTATATTTATTACCA USA300HOU_2064 2188941 - 2188771 - | hypothetical protein alr2 2190174 - 2189026 - | alanine racemase acpS 2190599 - 2190240 - | holo-[acyl-carrier-protein] synthase USA300HOU_2067 2191097 - 2190603 - | hypothetical protein USA300HOU_2068 2192664 - 2191081 - | hypothetical protein TERM 2244 2192570 - 2192555 - G 74 -6.2 -4.48987 | TTCGTATAATCAAAA TCTTTC AATT GAAAGA TAATGAAAATAAAAA USA300HOU_2069 2193136 - 2192657 - | hypothetical protein kdpC 2193904 - 2193344 - | P-ATPase superfamily P-type ATPase potassium (K+) transporter subunit C kdpB 2195951 - 2193924 - | P-ATPase superfamily P-type ATPase potassium (K+) transporter subunit B TERM 2245 2194654 - 2194640 - G 74 -6.4 -4.42062 | opp_overlap 2194653, overlap 2194644 CATCTTTTAAATAAA TCACGC CAA GCATGA CATTGTTTTCAATGA TERM 2246 2195171 - 2195155 - G 74 -6.5 -4.30987 | opp_overlap 2195155 ATCGCCGATAACAAA CCACCGA TTG TCGTTGG TATTAAACATACTGT kdpA 2197646 - 2195970 - | potassium-transporting ATPase subunit A USA300HOU_2073 2197780 - 2197670 - | hypothetical protein kdpD 2197918 - 2200575 + | sensor histidine kinase KdpD kdpE 2200575 - 2201270 + | KDP operon transcriptional regulator TERM 2247 2201317 - 2201283 - T 93 -5.7 -5.72053 | opp_overlap 2201283 TAATTAAATAAAAAA GATCGCTGCCATTAA ACGAA TGATTGGCAGTGATC TTTTTTATATTCAAC TERM 2248 2201283 - 2201317 + T 95 -7.9 -5.47159 | opp_overlap 2201283 TAATTAAATAAAAAA GATCGCTGCCATTAA ACGAA TGATTGGCAGTGATC TTTTTTATATTCAAC TERM 2249 2201626 - 2201599 - T 81 -2.8 -5.80951 | gap 1 ATTGAAAACAAAAAA GAGCTCAA-GACA TTA CATCTTTAAGCTC TTAATCTATAAATTA USA300HOU_2076 2203159 - 2201639 - | ATP-dependent RNA helicase TERM 2250 2202541 - 2202555 + g 70 -3.6 -4.84363 | CAGACATTTCATTAT TCATTG TCT TAATGA TTTTTGGTGATTTCA TERM 2251 2202880 - 2202862 - G 73 -7.4 -3.82205 | CGAATACAGTAACAA CTTGGACA CCT TGTCCACG GCTAAATTCTCTTAA TERM 2252 2203608 - 2203579 - R 91 -5.1 -5.71295 | ACATAAAAAGAAAAA GGCAATTTTGTAT TTAC ACACAAAACCACC TCTTCTTTGTAATCT murF 2205034 - 2203676 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ddlA 2206119 - 2205049 - | D-alanyl-alanine synthetase A USA300HOU_2079 2206437 - 2207639 + | FtsW/RodA/SpoVE family cell division protein TERM 2253 2207750 - 2207795 + T 100 -9.9 -4.85918 | opp_overlap 2207750 ACTCGATAATAACAA TCCCTCTTTGAAGTACACATT GTAA AATGTACACTCTAAAGAGGGA TTTTGTTATATAGTA TERM 2254 2207795 - 2207750 - T 100 -14.3 -4.03219 | opp_overlap 2207750 ACTCGATAATAACAA TCCCTCTTTGAAGTACACATT GTAA AATGTACACTCTAAAGAGGGA TTTTGTTATATAGTA TERM 2255 2207844 - 2207870 + T 72 -8 -3.60234 | opp_overlap 2207844 AATCCAGTCAAAAAA GCTATCATCGAA TAG TCCGACGATAGC TTTAACGGTGTGTGA TERM 2256 2207870 - 2207844 - T 100 -12.4 -5.10497 | opp_overlap 2207844 AATCCAGTCAAAAAA GCTATCATCGAA TAG TCCGACGATAGC TTTAACGGTGTGTGA USA300HOU_2080 2208040 - 2207903 - | hypothetical protein TERM 2257 2207956 - 2207970 + g 80 -2.9 -5.63374 | AAGTATTAATAATGT CTAAA CGAGA TTTAG TTTTTTTAATATTCA USA300HOU_2081 2208377 - 2208168 - | hypothetical protein USA300HOU_2082 2208682 - 2208389 - | hypothetical protein TERM 2258 2208743 - 2208753 + H 70 -5.4 -4.60041 | AAAACACAACGTCAA CACA AAG TGTG TTTTTCAAACTAAAT TERM 2259 2209156 - 2209144 - g 75 -4.9 -5.00884 | AGCTGCTTTAAAAAA TGAAA ACT TTTCA AATTCCAATTATCAA cls2 2208848 - 2210332 + | cardiolipin synthetase USA300HOU_2084 2210360 - 2211007 + | hypothetical protein USA300HOU_2085 2211174 - 2211067 - | hypothetical protein USA300HOU_2086 2211274 - 2211182 - | hypothetical protein TERM 2260 2211698 - 2211644 - R 100 -17.7 -3.63782 | gap 1, opp_overlap 2211644 2211650, overlap 2211634 2211650 TAATATTATTTCAAA TAAAAACAGCAGTAGGATGACTTTCA CATT TGAAA-TCATCTTACTGCTGTTTCTA TTTATCACATATTGT TERM 2261 2211644 - 2211698 + r 100 -17.7 -3.93004 | gap 1, opp_overlap 2211634 2211644 2211650, overlap 2211650 TAATATTATTTCAAA TAAAAACAGCAGTAGGATGACTTTCA CATT TGAAA-TCATCTTACTGCTGTTTCTA TTTATCACATATTGT TERM 2262 2211650 - 2211692 + r 100 -16.7 -4.40003 | gap 1, opp_overlap 2211650 2211644, overlap 2211644 TATTTCAAATAAAAA CAGCAGTAGGATGACTTTCA CATT TGAAA-TCATCTTACTGCTG TTTCTATTTATCACA TERM 2263 2211692 - 2211650 - R 100 -14.5 -5.28942 | gap 1, opp_overlap 2211644 2211650, overlap 2211644 TATTTCAAATAAAAA CAGCAGTAGGATGACTTTCA CATT TGAAA-TCATCTTACTGCTG TTTCTATTTATCACA TERM 2264 2211803 - 2211751 - R 100 -14.6 -4.75174 | gap 1, opp_overlap 2211751 2211754 TATTGAAGCGAAAAA TAATGTGCGCCCTATAAAGTTAAAA TTAT CTTCAACTTT-TAGGGTGCACATTA TTTGGACTTGCTAAG TERM 2265 2211751 - 2211803 + r 100 -13.9 -3.67976 | gap 1, opp_overlap 2211751, overlap 2211754 TATTGAAGCGAAAAA TAATGTGCGCCCTATAAAGTTAAA ATTATC TTCAACTTT-TAGGGTGCACATTA TTTGGACTTGCTAAG TERM 2266 2211754 - 2211800 + r 100 -11.2 -3.97019 | gap 1, opp_overlap 2211751, overlap 2211751 TGAAGCGAAAAATAA TGTGCGCCCTATAAAGTTAAA ATTATC TTCAACTTT-TAGGGTGCACA TTATTTGGACTTGCT USA300HOU_2087 2212575 - 2211820 - | hypothetical protein TERM 2267 2212343 - 2212355 + g 85 -4.1 -5.68489 | ACTTGCATTAATTCT TGGTT TGC AGCCA TTTTTTCTTCTTGTG TERM 2268 2215757 - 2215737 - H 100 -9.1 -5.95539 | opp_overlap 2215737 CCCTAAATAAAAAAA CTACTTCCA ACA TGAAAGTAG TTTGATGGCAATGTT TERM 2269 2216047 - 2216013 - H 100 -9.4 -5.95539 | opp_overlap 2216021, overlap 2216014 2216015 TGCGAAATAAAAAAA CCGGAACATATCGAGA ATT CCCCGATATATTCCAA TCTAAAAGTTACTTA TERM 2270 2216046 - 2216014 - H 100 -10.7 -4.15696 | opp_overlap 2216021, overlap 2216013 2216015 GCGAAATAAAAAAAC CGGAACATATCGAGA ATT CCCCGATATATTCCA ATCTAAAAGTTACTT TERM 2271 2216045 - 2216015 - H 93 -12 -3.07791 | opp_overlap 2216021, overlap 2216014 2216013 CGAAATAAAAAAACC GGAACATATCGAGA ATT CCCCGATATATTCC AATCTAAAAGTTACT TERM 2272 2216179 - 2216189 + H 74 -6.8 -4.32857 | TCAGGAGCATTTGCT GGTG ATA CACC TTTATATTTAGCAGG TERM 2273 2217090 - 2217054 - H 75 -4.5 -5.07941 | overlap 2217056 AAAACTACACAAAAA GACGACCTACACAAC AGTACTA GTCATGTAAGTCGTT TTTAAGTGAGTATAT TERM 2274 2217088 - 2217056 - H 75 -7.1 -4.13652 | overlap 2217054 AACTACACAAAAAGA CGACCTACACAAC AGTACTA GTCATGTAAGTCG TTTTTAAGTGAGTAT TERM 2275 2217480 - 2217500 + H 79 -5.5 -5.01497 | TATAATTTCGGTGCG TTGCAAC ACAAAAC GTTGCAA TTTTTCTATCCTCCT USA300HOU_2088 2217767 - 2218207 + | hypothetical protein TERM 2276 2218217 - 2218254 + T 100 -3.1 -6.37666 | gap 2, opp_overlap 2218217 GAGTAAAATAAAAAA CATTCAAAGA-TT-ATG CCAACA CATTAAATCTTTGAATG TTTTTTTTGTTTTAT TERM 2277 2218254 - 2218217 - T 87 -3.8 -5.83211 | gap 2, opp_overlap 2218217 GAGTAAAATAAAAAA CATTCAAAGA-TT-ATGC CAAC ACATTAAATCTTTGAATG TTTTTTTTGTTTTAT fabZ 2218706 - 2218266 - | (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase murA 2220005 - 2218740 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase USA300HOU_2091 2220349 - 2220116 - | hypothetical protein TERM 2278 2220718 - 2220738 + r 93 -11.3 -3.61527 | opp_overlap 2220722 AATTAGTATTTCTTA TACATGAGT TTT ACTCATGTA TTCCTATTTTTAAAT TERM 2279 2220902 - 2220871 - R 100 -18.2 -5.20154 | opp_overlap 2220871 ATATAATTCAAAAAA GGGTCGAAGATATG AAAT CACATCTTCGACCC TTTATTTACTATTTT TERM 2280 2220871 - 2220902 + r 100 -16 -4.60648 | opp_overlap 2220871 ATATAATTCAAAAAA GGGTCGAAGATATG AAAT CACATCTTCGACCC TTTATTTACTATTTT atpC 2221315 - 2220911 - | F0F1 ATP synthase subunit epsilon atpD 2222747 - 2221335 - | F0F1 ATP synthase subunit beta atpG 2223635 - 2222769 - | F0F1 ATP synthase subunit gamma TERM 2281 2223480 - 2223490 + g 71 -5.4 -4.46155 | opp_overlap 2223480, overlap 2223471 TGCAACTGCAGTAAT TGCA TCT TGCA TTTTATCCATATATG atpA 2225174 - 2223666 - | F0F1 ATP synthase subunit alpha TERM 2282 2224428 - 2224409 - G 83 -8 -4.40993 | opp_overlap 2224408 2224411, overlap 2224427 CATAAACGATTAAAA CATGTTTA CCGT TAAACATG AATTCTTCACCCATT atpH 2225735 - 2225196 - | F0F1 ATP synthase subunit delta atpF 2226256 - 2225735 - | F0F1 ATP synthase subunit B atpE 2226666 - 2226454 - | F0F1 ATP synthase subunit C atpB 2227437 - 2226709 - | F0F1 ATP synthase subunit A USA300HOU_2100 2227811 - 2227458 - | hypothetical protein mnaA 2229108 - 2227978 - | UDP-GlcNAc 2-epimerase TERM 2283 2228373 - 2228386 + g 73 -4.5 -4.91712 | TCTTTTGAGCCACCT CTCGA ACTT TCGGG TTTTTATGCATTGGA TERM 2284 2228700 - 2228727 + g 82 -8.6 -3.99806 | CACCAACTAATTGTC TATTCACCTCTT CTGG AAAAGGTGAATA TTTATCATAACTTCT upp 2229758 - 2229129 - | uracil phosphoribosyltransferase glyA 2231024 - 2229786 - | serine hydroxymethyltransferase USA300HOU_2104 2231575 - 2231051 - | hypothetical protein TERM 2285 2231629 - 2231605 - R 100 -10.1 -5.93252 | opp_overlap 2231603 2231605 CCTAAAAATAAAAAA GGAATATAGCA AAG TGCTACACTCC TCTATTATAACTTAT TERM 2286 2233221 - 2233187 - R 70 -3.7 -5.08367 | gap 1 AATATAAAGCAAAAA GCTATGCACTTAACTA ATCA TAGCAAAG-GCATAAC TTCTAATTACCATTT USA300HOU_2105 2234064 - 2233228 - | HemK family methyltransferase TERM 2287 2234021 - 2234044 + g 79 -5.4 -5.04733 | opp_overlap 2234027 AACCCTTTTTGTTGT GTTAAATGAA TTGC TTCATCTAAC TTTTCTTTATAATTC prfA 2235127 - 2234051 - | peptide chain release factor 1 tdk 2235727 - 2235128 - | thymidine kinase TERM 2288 2236058 - 2236025 - R 95 -6.1 -5.72622 | gap 1 CTTATAAATAAAAAA GCTGTCTACAATTCCA TTA TAGGA-TGCAGACAGC TTAACGATTACTATA rpmE 2236328 - 2236074 - | 50S ribosomal protein L31 type B rho 2237777 - 2236446 - | transcription termination factor Rho TERM 2289 2237982 - 2237938 - R 84 -8.8 -4.32233 | opp_overlap 2237944, overlap 2237939 2237944 ATAAAAATTGCAAAA TTAAAACAGTACACAAAACT TAATT AGTCATGTGCACTGTTTTAT TGCGATTTTTAATTC TERM 2290 2237981 - 2237939 - R 100 -12.3 -3.17713 | opp_overlap 2237944, overlap 2237938 2237944 TAAAAATTGCAAAAT TAAAACAGTACACAAAACT TAATT AGTCATGTGCACTGTTTTA TTGCGATTTTTAATT TERM 2291 2237976 - 2237944 - R 83 -7.8 -4.67641 | opp_overlap 2237944, overlap 2237939 2237938 ATTGCAAAATTAAAA CAGTACACAAAACT TAATT AGTCATGTGCACTG TTTTATTGCGATTTT aldA 2239436 - 2238009 - | aldehyde dehydrogenase TERM 2292 2239643 - 2239595 - R 100 -9.8 -5.27938 | ATTTTTAAATAAAAA TAACTATTCCCACATCATCGCA AATAA TGCGAAGACTTAGAAATAGTTA TAATCAATGCTATGT USA300HOU_2111 2240012 - 2239674 - | hypothetical protein murZ 2241357 - 2240098 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 2293 2241771 - 2241746 - R 95 -8.4 -5.40625 | opp_overlap 2241746 2241749 ATACGACATAAAAAA GAAGCAAACA CCATTT TGTCTGCTTC TTTTAAAATTAATAT TERM 2294 2241746 - 2241771 + r 72 -6.2 -4.21098 | opp_overlap 2241746, overlap 2241749 ATACGACATAAAAAA GAAGCAAACA CCATTT TGTCTGCTTC TTTTAAAATTAATAT fbaA 2242683 - 2241823 - | fructose-bisphosphate aldolase TERM 2295 2242305 - 2242336 + g 74 -5.3 -4.65916 | gap 1, opp_overlap 2242314 CACCTTTTTCATGAG CGTATTCAACAACT TTTTT AGTTGTTGC-TACG TTTTCTTCGAATGGG TERM 2296 2242526 - 2242508 - G 73 -7.4 -3.88137 | ACAATTGTGTAGAAA CCGCTCAT GTA ACGAGCAG CACCTTCAGAAACAC USA300HOU_2114 2242901 - 2243422 + | hypothetical protein TERM 2297 2243471 - 2243529 + T 85 -7.1 -4.93079 | gap 2, opp_overlap 2243482, overlap 2243482 ACATAATATTAAAAT TATAC-GA-AAAACCGGTACTTTCAATGT TTA ACAATGAAAGTACCGGTTTTATTAGCAAA TTTATTTATTTTGTT TERM 2298 2243482 - 2243516 + T 100 -18.8 -4.64334 | opp_overlap 2243482, overlap 2243471 AAATTATACGAAAAA CCGGTACTTTCAATGT TTA ACAATGAAAGTACCGG TTTTATTAGCAAATT TERM 2299 2243516 - 2243482 - T 100 -18.8 -4.85177 | opp_overlap 2243482 2243471 AAATTATACGAAAAA CCGGTACTTTCAATGT TTA ACAATGAAAGTACCGG TTTTATTAGCAAATT pyrG 2245141 - 2243531 - | CTP synthetase TERM 2300 2245396 - 2245365 - R 100 -12.4 -6.01187 | gap 1, opp_overlap 2245363 AATTAAATAAAAAAA CGCTCCCTCTCACAA ATT CTGTAAG-GGGAGCG TATAAATTTTATACA rpoE2 2246007 - 2245477 - | DNA-directed RNA polymerase subunit delta USA300HOU_2117 2246116 - 2245973 - | hypothetical protein USA300HOU_2118 2246979 - 2246119 - | acetyltransferase coaA 2247403 - 2248206 + | pantothenate kinase TERM 2301 2248207 - 2248263 + T 71 -5.6 -4.51378 | opp_overlap 2248212, overlap 2248212 2248214 TATTTAGAAAAATAG AAAAAGACCATTTATATGCGCG-TTGTT TTA AATAAACGC-TATATAAATGGCCTTTTA TTTTATGGTCTAAGT TERM 2302 2248258 - 2248212 - T 85 -5.5 -5.38398 | opp_overlap 2248207 2248212 2248214 AGAAAAATAGAAAAA GACCATTTATAT-GCGCGTTGTT TTA AATAA-ACGCTATATAAATGGCC TTTTATTTTATGGTC TERM 2303 2248212 - 2248258 + T 81 -5.5 -5.20781 | opp_overlap 2248212, overlap 2248207 2248214 AGAAAAATAGAAAAA GACCATTTATATGCGCG-TTGTT TTA AATAAACGC-TATATAAATGGCC TTTTATTTTATGGTC USA300HOU_2120 2249007 - 2248336 - | hypothetical protein TERM 2304 2249269 - 2249233 - R 87 -8.1 -4.71426 | opp_overlap 2249233 CCTTTATCAACAAAA TGGCAACTCTTATAACA TAG TGAAATAAAAGTCGCCA TTTAATATTAGTATT TERM 2305 2249350 - 2249338 - R 75 -4.1 -5.1925 | CTAGAATCGAAAAAA GCTTG TTA CAAAC GCATATTCAGTCAAC USA300HOU_2121 2250599 - 2249406 - | hypothetical protein hmrA 2251783 - 2250599 - | M20D subfamily peptidase luxS 2252094 - 2252564 + | S-ribosylhomocysteinase TERM 2306 2252633 - 2252593 - T 76 -6.3 -4.56093 | overlap 2252588 AAGTTAATCAGAAAA GCAGTCGAACAATGA TTTTACAATCG CCATTGTCCAACTGC TTTTTATTATGCTTC TERM 2307 2252709 - 2252653 - T 76 -9.9 -2.73441 | gap 1, opp_overlap 2252661, overlap 2252661 TATTATGCTTCAAAG TCAAA-AAATCGAACAAATGAAAAAG TAAAAT CTTTAACATTTGTCCGATTTATTTGA GAACCACTATAATTT TERM 2308 2252700 - 2252661 - T 86 -7.3 -5.22039 | opp_overlap 2252661, overlap 2252653 TTCAAAGTCAAAAAA TCGAACAAATGAAAAAG TAAAAT CTTTAACATTTGTCCGA TTTATTTGAGAACCA USA300HOU_2124 2253066 - 2252716 - | hypothetical protein TERM 2309 2252773 - 2252787 + g 85 -8.6 -4.16814 | opp_overlap 2252773 2252772 2252770 TAACCTTAAATATAG TTGCCA TGT TGGCAA TTGTTTATCTCCTAA pdp 2254420 - 2253080 - | pyrimidine-nucleoside phosphorylase deoC2 2255322 - 2254660 - | deoxyribose-phosphate aldolase deoD2 2255637 - 2256347 + | purine nucleoside phosphorylase TERM 2310 2256395 - 2256443 + T 76 -6.9 -4.36774 | gap 1, opp_overlap 2256400, overlap 2256400 AATGCGATTAAACTC AAAAAGCCAACACAT-TCTGGG CGTATC CCCATTTATGTGTTGGCTTTTA TTTATATTATTACTT TERM 2311 2256438 - 2256400 - T 80 -6.8 -4.82855 | gap 1, opp_overlap 2256395 2256400 GATTAAACTCAAAAA GCCAACACAT-TCTGGG CGTATC CCCATTTATGTGTTGGC TTTTATTTATATTAT TERM 2312 2256400 - 2256438 + T 83 -6.8 -5.11389 | gap 1, opp_overlap 2256400, overlap 2256395 GATTAAACTCAAAAA GCCAACACAT-TCTGGG CGTATC CCCATTTATGTGTTGGC TTTTATTTATATTAT dps 2256911 - 2256468 - | Dps family stress protein USA300HOU_2129 2257524 - 2257111 - | hypothetical protein TERM 2313 2257893 - 2257845 - R 90 -6.8 -5.50723 | opp_overlap 2257843 2257845 TTATTAAAATAAAAA CGAGTAATCTATCATAAGCTCT TAATT AGCTCTTATGGTTGATTACCCG TCATTTTTTCTTTAT USA300HOU_2130 2259355 - 2257982 - | hypothetical protein TERM 2314 2258715 - 2258731 + g 72 -5.1 -4.76041 | ACTGTACTATTTGTT CTACCAG GAA TTGGTGG TTTTTCATGAATATG TERM 2315 2259466 - 2259481 + r 74 -7.6 -3.84712 | ATACCCTTTGTTCAC TGCGAT TTTA ATCGCA TTTCCTATAACATTG TERM 2316 2259933 - 2259906 - R 71 -3.4 -5.25906 | gap 1, opp_overlap 2259907, overlap 2259907 ATAAACCAACAAAAA CCCCCTCAC-TAC TAT GCAAGTGAGAGGT TATGTTGATGTGCTT USA300HOU_2131 2260266 - 2260027 - | hypothetical protein manA1 2261226 - 2260288 - | mannose-6-phosphate isomerase TERM 2317 2261635 - 2261614 - R 78 -6.6 -4.62085 | overlap 2261594 2261611 ATTTTCAAAAAATAA CGAGTTAC GAAAAA GTAACCCG CTTCAAATCATATTT USA300HOU_2133 2262326 - 2261661 - | hypothetical protein czrA 2262478 - 2262798 + | transcriptional regulator CzrA czrB 2262800 - 2263780 + | CDF family cation diffusion facilitator TERM 2318 2263790 - 2263831 + F 100 -10.2 -5.51046 | opp_overlap 2263794 CATTAATAATTTTAA CCTACTGCCATTGCATCG ATTAAA CTTTTCAATGGCAGTAGG TTTTTTATGTCTTTA USA300HOU_2136 2263846 - 2263944 + | hypothetical protein USA300HOU_2137 2264046 - 2265137 + | lytic regulatory protein TERM 2319 2265180 - 2265139 - T 91 -8.7 -4.78981 | opp_overlap 2265144, overlap 2265129 2265140 2265141 ATCAACCAAAATAAA TTTTAGAGCCCCTTACAAC TTTA GTTGTTAGGGGCTCTTATG CATGCGCTTAGCGCA TERM 2320 2265179 - 2265140 - T 100 -12.2 -3.45762 | opp_overlap 2265144, overlap 2265129 2265139 2265141 TCAACCAAAATAAAT TTTAGAGCCCCTTACAAC TTTA GTTGTTAGGGGCTCTTAT GCATGCGCTTAGCGC TERM 2321 2265178 - 2265141 - T 100 -15.7 -2.66372 | opp_overlap 2265144, overlap 2265129 2265140 2265139 CAACCAAAATAAATT TTAGAGCCCCTTACAAC TTTA GTTGTTAGGGGCTCTTA TGCATGCGCTTAGCG TERM 2322 2265144 - 2265175 + T 100 -17.4 -3.36803 | opp_overlap 2265141 2265140 2265139 CCAAAATAAATTTTA GAGCCCCTTACAAC TTTA GTTGTTAGGGGCTC TTATGCATGCGCTTA TERM 2323 2265238 - 2265261 + T 74 -9 -3.30173 | gap 1, overlap 2265236 TTAGGGGCTCTTATG CAGTT-GATGC GTA GCATCCAACTG TGTTCCTCTATTTTT TERM 2324 2265554 - 2265529 - T 71 -3.3 -5.19879 | CTTGAAACACAAAAA GGGCAACAC TCGGAAAC ATGTTACCC TAATGAGCCCGTTAA USA300HOU_2138 2265741 - 2265637 - | hypothetical protein USA300HOU_2140 2267564 - 2266428 - | SAP domain-containing protein TERM 2325 2267315 - 2267329 + g 71 -5.7 -4.52873 | opp_overlap 2267314 TACGTTTAATTAAGT CAGGT TTATT ACCTG TTGTTTTTATACCAA USA300HOU_2141 2267853 - 2267945 + | hypothetical protein USA300HOU_2142 2268112 - 2268002 - | hypothetical protein TERM 2326 2268599 - 2268545 - R 100 -12.7 -2.86828 | opp_overlap 2268552, overlap 2268552 AAATATTTATAAGCA TACAAAAGAGCAGT-AAGACATTTTCT AAT AGAAAATAACTTTACTGCTC-TTTGTA CATTACTCATCAACT TERM 2327 2268552 - 2268593 + r 90 -9.7 -3.98826 | gap 1, opp_overlap 2268552 2268545 TATAAGCATACAAAA GAGCAGT-AAGACATTTTCT AAT AGAAAATAACTTTACTGCTC TTTGTACATTACTCA TERM 2328 2268593 - 2268552 - R 100 -11.9 -4.63007 | gap 1, opp_overlap 2268552, overlap 2268545 TATAAGCATACAAAA GAGCAGT-AAGACATTTTCT AAT AGAAAATAACTTTACTGCTC TTTGTACATTACTCA USA300HOU_2143 2269507 - 2268650 - | HAD family phosphatase USA300HOU_2144 2270357 - 2269575 - | ABC transporter ATP-binding protein TERM 2329 2269885 - 2269873 - G 72 -9.1 -2.62977 | overlap 2269872 2269871 TCTAAAATTAAAACC TGGGG TTG CCCCA TTAAAGCTCGTGCAA TERM 2330 2270544 - 2270512 - R 100 -10 -5.09225 | AGTCGACCTAAAAAA GCACCCTTCTAG TCGATTAAT CTAAAAGGGTGC CATATACTTTAATTT glmS 2272412 - 2270589 - | D-fructose-6-phosphate amidotransferase TERM 2331 2272849 - 2272859 + H 76 -5.4 -5.08255 | TTAATCATTATTGTA CAAC GGT GTTG TTTTGTTTTGCAAAT TERM 2332 2272965 - 2272997 + H 76 -3.6 -5.4659 | TTGATGACACTTTAT TTAATTTTGTCACA TTTAT TTTGACAAAGTTGA TTTTTGTTTATATTG mtlF 2273075 - 2274613 + | PTS family fructose/mannitol (fru) porter component IIBC TERM 2333 2274648 - 2274634 - f 85 -5.6 -5.48163 | opp_overlap 2274634 2274632 AAATAAATTAAAAAA TGGAGG ATA CCGCCA TGTTATTGAGTACAC bglG 2274648 - 2276780 + | transcriptional antiterminator mtlA 2276792 - 2277226 + | PTS family fructose/mannitol (fru) porter component IIA mtlD 2277226 - 2278332 + | mannitol-1-phosphate 5-dehydrogenase TERM 2334 2278491 - 2278443 - T 100 -8.6 -5.47159 | opp_overlap 2278443 TCTGAACATAAAAAA TACTCCCTTCA-ACATAGACAC TTAACTT GTGT-TATGTATGAAAGGAGTA TTTTTGCGTTAATAA TERM 2335 2278443 - 2278491 + T 78 -6.4 -4.7629 | opp_overlap 2278443 TCTGAACATAAAAAA TACTCCCTTCA-ACATAGACAC TTAACTT GTGT-TATGTATGAAAGGAGTA TTTTTGCGTTAATAA TERM 2336 2279684 - 2279706 + T 85 -10.6 -3.56347 | overlap 2279682 TGCGGTTTATCATTT GCATCATCAG TTG CTGATGTTGC TGTTGTTTCACCTGT TERM 2337 2280028 - 2280049 + T 72 -4.3 -5.05712 | overlap 2280029 ACGTGCAATTTCTTT CGCCGATGC ATCT GCATCTGCA TTTTTAATTATTTCT TERM 2338 2280029 - 2280048 + T 72 -7.8 -3.60987 | overlap 2280028 CGTGCAATTTCTTTC GCCGATGC ATCT GCATCTGC ATTTTTAATTATTTC TERM 2339 2280091 - 2280103 + T 81 -6.3 -5.13741 | AACCACTTCTCTGAT TGCTT CCA AAGCA TTTTTCTTAACTTCA TERM 2340 2283536 - 2283546 + T 71 -6.8 -4.02653 | TTTTGAGCTTTTCTA GCTG TTG CAGC TTGTTTAACTTCATT TERM 2341 2286344 - 2286327 - T 100 -11.3 -5.59879 | opp_overlap 2286326 TACAAACACAAAAAA CCGATGC ATAC GCATCGG CTCATTTGTAATACA glmM 2287719 - 2286364 - | phosphoglucosamine mutase TERM 2342 2286888 - 2286898 + g 70 -4 -4.95896 | CAATCATGTCATTAT TCAA TTC TTGA TTTTTATGCATTTCT USA300HOU_2152 2288678 - 2287746 - | hypothetical protein TERM 2343 2288458 - 2288492 + g 72 -5 -4.67982 | overlap 2288460 ATTATCTTTGATTGT GGTCCTGAAATAGTCA CAT TAACTGTTTCAGGCGC TTTTGTTAAATGCAA USA300HOU_2153 2289489 - 2288680 - | hypothetical protein TERM 2344 2289591 - 2289581 - R 76 -2.6 -5.56264 | TTTAAATAGAAAAAA TTTA TTT TAAA GATTATAACTACTCT TERM 2345 2289666 - 2289632 - R 90 -7.3 -5.64006 | overlap 2289655 AGTGAATTAAAAAAA GTAGTGCAAAAAGCA AAATA TACTTTATACACTAC AAATCATTTATTTAT arg 2290586 - 2289678 - | arginase TERM 2346 2290711 - 2290732 + H 82 -4.4 -5.52384 | overlap 2290714 TCTTCATCTTTTATG GTGGGAAG GTAAAA CTTCCTGC TTTTTTTAATACACA USA300HOU_2155 2290812 - 2292014 + | transposase TERM 2347 2292128 - 2292098 - f 72 -4.7 -4.9041 | gap 1 AGGAGAAAAAAAGAA GACAACCAAGCCCA ATAA TGGACT-GGCCGCC TAATAATAAAAGCTC TERM 2348 2292238 - 2292215 - g 100 -11.8 -5.87688 | AGAACCTAAAAAAAA GCACTTCCCA AAAA TGGAAAGTGC AAGTAGTGAGCCATA USA300HOU_2156 2292150 - 2292254 + | hypothetical protein TERM 2349 2292680 - 2292667 - T 70 -8.1 -3.14881 | TAACCGCTTGACCAA GGAGC CATG GCTCC ACAGGTAGGACTCGA TERM 2350 2295574 - 2295593 + T 90 -10.8 -3.66803 | opp_overlap 2295573 2295572 GAGTGTCCTACAACC CCAACAAG CAAG CTTGTTGG TTTGGGCTCTTCCCG TERM 2351 2295904 - 2295931 + T 70 -5.6 -4.28115 | AACGCGTTATTAATC TTGTGAGTGTTC TTTC GAACACTAGCGA TTATTTCTTATGAAT TERM 2352 2296109 - 2296082 - T 73 -3.7 -5.27477 | gap 1, overlap 2296084 2296101 2296103 ACTTTAACCAAAAAA TATTTGAATGTT AAATA AACATTCAAA-A CTGAATACAATATGT TERM 2353 2296108 - 2296084 - T 84 -8.8 -4.26777 | overlap 2296082 2296101 2296103 TTTAACCAAAAAATA TTTGAATGTT AAATA AACATTCAAA ACTGAATACAATATG TERM 2354 2297089 - 2297107 + T 71 -8.8 -2.75963 | overlap 2297088 AGTTTCCAATGACCC TCCACGGT TGA GCCGTGGG CTTTCACATCAGACT TERM 2355 2297520 - 2297541 + T 83 -10.3 -3.25079 | overlap 2297518 AAGACCGTCTTTCAC TTTTGAACC ATGC GGTTCAAAA TATTATCCGGTATTA TERM 2356 2297766 - 2297782 + T 73 -5.9 -4.66833 | overlap 2297767 ATACTAAATAATGTT TGTAACT AAT AGTTACG TTTTTGGAATTAACG TERM 2357 2297977 - 2297991 + T 70 -6.4 -4.08571 | opp_overlap 2297970, overlap 2297960 TTTAAAAACAACTGC GTCGTT TTT GACGAC TTTATCATATTATCA TERM 2358 2298137 - 2298163 + T 83 -9.6 -3.67285 | opp_overlap 2298137 AAATCAACATAAAAA CGTACAAAATAA AAG TAATTTTGTACG TTTAGCATATATTAT TERM 2359 2298163 - 2298137 - T 100 -9.6 -5.16206 | opp_overlap 2298137 AAATCAACATAAAAA CGTACAAAATAA AAG TAATTTTGTACG TTTAGCATATATTAT USA300HOU_2157 2299245 - 2298181 - | ATP-binding protein TERM 2360 2298880 - 2298849 - G 70 -8.2 -3.19668 | gap 1, opp_overlap 2298857, overlap 2298857 CACGAGCTAAGGCAA CGGCTAAATTTACTG CAA CAGTAGATTTA-CCG ACACCACCTTTACCG TERM 2361 2299382 - 2299349 - R 100 -7.6 -5.99154 | TATTAAATAAAAAAA GCAGTTAGCCTATT ATTTTA AATAGACCAACTAC TATAATTATTTTAAA USA300HOU_2158 2300838 - 2299393 - | major facilitator transporter TERM 2362 2299852 - 2299840 - G 71 -7.7 -3.6363 | opp_overlap 2299840 ACCAGTATAAATCAA TGGTC TAG GACCA TACTTATCATAAAAT TERM 2363 2300543 - 2300529 - G 74 -6.4 -4.43681 | GAGCTAACATTAAAA CTCCAA AAT TCGGAG CTAAGGCTGCAACAA TERM 2364 2301150 - 2301120 - R 90 -7.7 -5.10461 | gap 1 TCTATTGAACAAAAA GAAGTTG-GAACAC ATAT GTGCCCTCAACTTC AGATATCTATTTTCT USA300HOU_2159 2301630 - 2301157 - | hypothetical protein TERM 2365 2301509 - 2301495 - G 77 -5.8 -4.72188 | CCAACCTAAAATAAA TAAGTA TTC TACTTA ATCCATATAAACCAA USA300HOU_2160 2303072 - 2301729 - | major facilitator transporter TERM 2366 2303232 - 2303220 - R 83 -3.3 -5.8187 | overlap 2303221 2303222 TATGTAATAAAAAAA GCGGA GTT TCCCC CAGCTTTTCTAAACG USA300HOU_2161 2303935 - 2303249 - | hemolysin III USA300HOU_2162 2305138 - 2303951 - | UTP--glucose-1-phosphate uridylyltransferase USA300HOU_2163 2305697 - 2305182 - | hypothetical protein TERM 2367 2305670 - 2305684 + g 71 -6.4 -4.2535 | CTCCAACGAGCATGC CGCATG AAG CATGTG TTTTACCTGTCATAT USA300HOU_2164 2305874 - 2306134 + | hypothetical protein TERM 2368 2306149 - 2306176 + T 100 -7.8 -5.66868 | opp_overlap 2306149 AATTGTATAAAAAAA TCATTCATGGTG AGGG CTTCATGAATGA TTTTTTTAATTGATT TERM 2369 2306176 - 2306149 - T 88 -5.6 -5.63504 | opp_overlap 2306149 AATTGTATAAAAAAA TCATTCATGGTG AGGG CTTCATGAATGA TTTTTTTAATTGATT USA300HOU_2165 2306234 - 2306127 - | hypothetical protein TERM 2370 2306256 - 2306214 - G 79 -8 -3.90309 | opp_overlap 2306219, overlap 2306219 CAGCATAAACAAATA CAAAAGGACAACTGTT CCCATAATTTT AACAGTTGTCCTTTTT CACATATATTTATAA TERM 2371 2306251 - 2306219 - G 88 -7.9 -4.93454 | opp_overlap 2306219, overlap 2306214 TAAACAAATACAAAA GGACAACTGTT CCCATAATTTT AACAGTTGTCC TTTTTCACATATATT TERM 2372 2306219 - 2306251 + g 83 -7.9 -4.6644 | opp_overlap 2306219 2306214 TAAACAAATACAAAA GGACAACTGTT CCCATAATTTT AACAGTTGTCC TTTTTCACATATATT TERM 2373 2306287 - 2306277 - R 72 -5.4 -4.79955 | ATATTTATAACAAAA GATG TGC CATC AAAGAAATAATTGGT USA300HOU_2166 2307636 - 2306266 - | hypothetical protein TERM 2374 2306503 - 2306487 - G 73 -7.3 -4.00465 | opp_overlap 2306499, overlap 2306499 TAGAAGGTAAAAACA TATCGGC AAA ACCGATA ATAATCGTTTGAGAA TERM 2375 2307466 - 2307454 - G 77 -5.5 -4.93365 | overlap 2307456 CGTCACAATTAAAAA TGGCA TTA CGCCA CCTAATACATCTTTA TERM 2376 2307509 - 2307499 - G 76 -6.8 -4.57073 | opp_overlap 2307507, overlap 2307474 CACGCCTGCTAAAAA TGCC ACG GGCA ACGTTGTTTGCTTCT TERM 2377 2307845 - 2307813 - R 86 -7.2 -5.17576 | opp_overlap 2307813 GATGAATTCAAAAAA GGTTAAGTACAA TTACTGATT TCGTACTTAACC TTTTTTAAACTCTAA TERM 2378 2307813 - 2307845 + r 79 -5.8 -5.07567 | gap 1, opp_overlap 2307813 GATGAATTCAAAAAA GGTTAAGTAC-AATT ACTG ATTTCGTACTTAACC TTTTTTAAACTCTAA USA300HOU_2167 2308840 - 2307872 - | iron (Fe3+) ABC transporter membrane protein USA300HOU_2168 2309868 - 2308837 - | iron (Fe3+) ABC transporter membrane protein TERM 2379 2309384 - 2309366 - G 79 -5.2 -5.0917 | CTACTAAAAAACAAA TGGATGGC CAT ACCAGCCA ATGCTAATTTAATGG TERM 2380 2309779 - 2309816 + g 74 -2.1 -5.56263 | gap 1, opp_overlap 2309782, overlap 2309781 2309782 TATACAAATAAAAAG AAAGCACAA-ACTCAC TATATAC GTGAGTGTTGTGCGTC TTTTTCTTTTATGAT TERM 2381 2309813 - 2309782 - G 90 -8.2 -5.1502 | gap 1, opp_overlap 2309781 2309779 2309782 ACAAATAAAAAGAAA GCACAA-ACTCAC TATATAC GTGAGTGTTGTGC GTCTTTTTCTTTTAT TERM 2382 2309782 - 2309813 + g 70 -8.2 -3.21407 | gap 1, opp_overlap 2309782, overlap 2309781 2309779 ACAAATAAAAAGAAA GCACAA-ACTCAC TATATAC GTGAGTGTTGTGC GTCTTTTTCTTTTAT USA300HOU_2169 2310863 - 2309880 - | iron (Fe3+) ABC transporter binding protein USA300HOU_2170 2312325 - 2311255 - | hypothetical protein USA300HOU_2171 2314089 - 2312332 - | hypothetical protein TERM 2383 2313722 - 2313734 + g 71 -6.3 -4.08872 | TGACTTATTAACGTT TGTCT GTG AGACA TTTGCTTATATGTTT USA300HOU_2172 2315269 - 2314076 - | major facilitator transporter TERM 2384 2314779 - 2314768 - G 70 -4.4 -4.72617 | CGATAAAATAACAAA TTGC CTGT GCAA GAAATGTTGTTGGCG USA300HOU_2173 2315371 - 2317347 + | hypothetical protein TERM 2385 2317486 - 2317541 + T 82 -8.7 -3.91032 | gap 1, opp_overlap 2317493, overlap 2317493 GGGACATAAATCCCT AAAAAAACAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTGTTCTCTA TTTATACAATACTTC TERM 2386 2317534 - 2317493 - T 100 -15.6 -5.4477 | gap 1, opp_overlap 2317493 2317486 AAATCCCTAAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 2387 2317493 - 2317534 + T 100 -15.6 -3.80279 | gap 1, opp_overlap 2317493, overlap 2317486 AAATCCCTAAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 2388 2318667 - 2318681 + T 71 -5.8 -4.50976 | ATTTACAAATAGCGA CAAATT CTC AATTTG TTTTATCCTATGACC TERM 2389 2319041 - 2319066 + T 72 -7.7 -3.55761 | opp_overlap 2319045, overlap 2319044 GACTTCAAACTATAT GAATGTGATGA CTGT TCATCATGTTC TTTGAGACATCAATG TERM 2390 2319352 - 2319333 - T 73 -5.8 -4.56314 | gap 1, opp_overlap 2319336, overlap 2319335 2319336 2319338 TTAATATAAGGAAAA TAGCAGCTC AAC GAGCTG-TA CATTATAAAATACAT TERM 2391 2319336 - 2319350 + T 76 -10 -2.60079 | opp_overlap 2319335 2319333 2319336 2319338 ATATAAGGAAAATAG CAGCTC AAC GAGCTG TACATTATAAAATAC TERM 2392 2319350 - 2319336 - T 77 -10 -2.91057 | opp_overlap 2319336, overlap 2319335 2319333 2319338 ATATAAGGAAAATAG CAGCTC AAC GAGCTG TACATTATAAAATAC TERM 2393 2319377 - 2319410 + T 100 -12.7 -5.16572 | opp_overlap 2319377 ATACATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT TERM 2394 2319410 - 2319377 - T 100 -14.9 -5.25893 | opp_overlap 2319377 ATACATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT asp23 2319972 - 2319463 - | alkaline shock protein 23 USA300HOU_2176 2320274 - 2320035 - | hypothetical protein USA300HOU_2177 2320835 - 2320287 - | hypothetical protein TERM 2395 2320874 - 2320862 - R 71 -4.9 -4.75776 | AAGTTAATTTAAAAA CATAT TAA ATATG TACCCATCAGTTTTT USA300HOU_2178 2322560 - 2320998 - | BCCT family betaine/carnitine/choline transporter TERM 2396 2322856 - 2322818 - R 95 -7.6 -5.4251 | gap 1, opp_overlap 2322821, overlap 2322821 GCTAGACACAAAAAA TAAGTCGCCT-ATACAG TATTTT CTGCATAAGGCGACTTT ACTTACTAATCTATA TERM 2397 2322821 - 2322853 + r 74 -7.1 -3.97444 | gap 1, opp_overlap 2322818 2322821 AGACACAAAAAATAA GTCGCCT-ATACAG TATTTT CTGCATAAGGCGAC TTTACTTACTAATCT TERM 2398 2322853 - 2322821 - R 100 -9.3 -4.78477 | gap 1, opp_overlap 2322821, overlap 2322818 AGACACAAAAAATAA GTCGCCT-ATACAG TATTTT CTGCATAAGGCGAC TTTACTTACTAATCT TERM 2399 2322890 - 2322902 + r 76 -6.3 -4.58283 | overlap 2322894 2322900 TAATTACTAATTTTC CAATC ATT GATTG TTTTTCCAACAATTG USA300HOU_2179 2323868 - 2322867 - | alcohol dehydrogenase TERM 2400 2323079 - 2323093 + g 73 -3.6 -5.1166 | CAAACATAAATTCAT GTGTAA ATG TTATAC TTTTTAATTTTAATG USA300HOU_2180 2325106 - 2324102 - | alcohol dehydrogenase USA300HOU_2181 2326255 - 2325386 - | hypothetical protein TERM 2401 2326505 - 2326479 - R 81 -7.3 -4.55295 | opp_overlap 2326479 2326481 CTTTCTATAAATAAA GACCTACCAGC ACTCG ACTGATAGGCC TTTTAATATCTATAA lacG 2327933 - 2326521 - | 6-phospho-beta-galactosidase lacE 2329669 - 2327951 - | PTS family lactose-N,N-diacetylchitobiose-beta-glucoside (lac) porter component IIBC lacF 2329980 - 2329669 - | PTS system, lactose-specific IIA component lacD 2330982 - 2330002 - | tagatose 1,6-diphosphate aldolase lacC 2331918 - 2330986 - | tagatose-6-phosphate kinase lacB 2332446 - 2331931 - | galactose-6-phosphate isomerase subunit LacB TERM 2402 2331979 - 2332007 + g 78 -7.5 -4.10791 | opp_overlap 2331979 2331983 TAAGAATTCATCAAA GAAATGTGGATCA GCT TGATCTGCATTGC TTGTTTCTAAATGTT lacA 2332890 - 2332462 - | galactose-6-phosphate isomerase subunit LacA TERM 2403 2332798 - 2332842 + g 89 -9 -4.29953 | gap 1, opp_overlap 2332806 2332808, overlap 2332795 CTGTCCTTCTGTTAC GTCAACAACATCATATTTATT GTCT AATAAGTATGAT-TTGATGAC TTCTTTTAATCGTTT TERM 2404 2333220 - 2333178 - R 86 -7.3 -5.25803 | gap 1, opp_overlap 2333189, overlap 2333180 AATTTGCATAAAAAA TA-GCCCATAAATGAATGCA AATT CACATTCACTTATGAGCATA TAGATACATATTTTA TERM 2405 2333217 - 2333180 - R 100 -11.5 -4.25873 | opp_overlap 2333189, overlap 2333178 TTTGCATAAAAAATA GCCCATAAATGAATGCA AATT CACATTCACTTATGAGC ATATAGATACATATT lacR 2334049 - 2333258 - | lactose phosphotransferase system repressor USA300HOU_2190 2334255 - 2334995 + | NAD-dependent deacetylase TERM 2406 2335004 - 2335041 + T 100 -11.5 -4.20354 | opp_overlap 2335010, overlap 2335010 AGAGTAATCAGTATG TAAAAAGCATTTCCCGA ATGG TAGGGAAATGCTTTTAA TTTTGGAGTTGCGTT TERM 2407 2335010 - 2335035 + T 100 -10.5 -4.67641 | opp_overlap 2335010, overlap 2335004 ATCAGTATGTAAAAA GCATTTCCCGA ATGG TAGGGAAATGC TTTTAATTTTGGAGT TERM 2408 2335035 - 2335010 - T 100 -10.5 -4.68994 | opp_overlap 2335010 2335004 ATCAGTATGTAAAAA GCATTTCCCGA ATGG TAGGGAAATGC TTTTAATTTTGGAGT USA300HOU_2192 2336280 - 2336155 - | hypothetical protein TERM 2409 2336464 - 2336425 - R 100 -9.5 -5.27779 | opp_overlap 2336428 TTTAAGAGTAAAAAA TAACCTGAAACATAGAC TTTAAC ATCCAAGTTTCAGGTTA GTGTAATGTAAATGA USA300HOU_2193 2337348 - 2336500 - | aldo/keto reductase USA300HOU_2194 2337433 - 2337335 - | hypothetical protein USA300HOU_2195 2337834 - 2337418 - | MerR family transcriptional regulator USA300HOU_2196 2338078 - 2338245 + | hypothetical protein TERM 2410 2338623 - 2338612 - g 74 -5.8 -4.4727 | GTAATATTGAGAAAA TCGC AGAA GCGA TGAGGAATCCTAAAA TERM 2411 2339871 - 2339851 - g 78 -7 -4.30034 | opp_overlap 2339851 AAAAGTCGAGTAAAA CTTTTGTT GGCGG AACAAAAG TTGATGACCAACATG TERM 2412 2340042 - 2340032 - g 71 -6.8 -4.24963 | overlap 2340022 TACAACGATTGAAAA TCGC AAA GCGA ATGGGTATACGTTAT hysA 2338236 - 2340665 + | hyaluronate lyase TERM 2413 2340712 - 2340670 - T 100 -13.8 -3.65446 | opp_overlap 2340675 2340700, overlap 2340675 TAACTAAATAAGCAA GAAAATCTCGACACTATA CCATTTT TATAGTGTCGAGATTTTA TAAGTATCGCCATCA TERM 2414 2340707 - 2340675 - T 100 -13.7 -4.85618 | opp_overlap 2340675 2340700, overlap 2340670 AAATAAGCAAGAAAA TCTCGACACTATA CCATTTT TATAGTGTCGAGA TTTTATAAGTATCGC TERM 2415 2340675 - 2340707 + T 100 -13.7 -4.45083 | opp_overlap 2340670 2340675, overlap 2340700 AAATAAGCAAGAAAA TCTCGACACTATA CCATTTT TATAGTGTCGAGA TTTTATAAGTATCGC USA300HOU_2198 2341579 - 2340725 - | M23B subfamily peptidase USA300HOU_2199 2342611 - 2341790 - | HAD family phosphatase USA300HOU_2200 2342899 - 2343324 + | hypothetical protein TERM 2416 2343347 - 2343374 + T 82 -7 -4.99435 | AAAATAGTTTTATAG GGCAAGCGCTGA AAAA TTGGCGTTTGTC TTTTTAGTTATTGAA TERM 2417 2343517 - 2343553 + T 100 -12.5 -4.78572 | opp_overlap 2343517 2343521, overlap 2343521 ATATCTGGAACCTAA TAAATCCCCTCACTACT GCT AATAGTGAAGGGATTTA TTTTATTACTTAGAC TERM 2418 2343553 - 2343517 - T 100 -16.9 -3.17901 | opp_overlap 2343517 2343521, overlap 2343521 ATATCTGGAACCTAA TAAATCCCCTCACTACT GCT AATAGTGAAGGGATTTA TTTTATTACTTAGAC TERM 2419 2343549 - 2343521 - T 100 -13.3 -4.2528 | opp_overlap 2343517 2343521, overlap 2343517 CTGGAACCTAATAAA TCCCCTCACTACT GCT AATAGTGAAGGGA TTTATTTTATTACTT TERM 2420 2343521 - 2343549 + T 93 -8.9 -4.91657 | opp_overlap 2343521 2343517, overlap 2343517 CTGGAACCTAATAAA TCCCCTCACTACT GCT AATAGTGAAGGGA TTTATTTTATTACTT alsD 2344392 - 2343688 - | acetolactate decarboxylase alsS 2346093 - 2344429 - | acetolactate synthase TERM 2421 2346525 - 2346496 - g 79 -5.7 -5.04597 | ATGGAGATATAAAAA GCCACAGCAAGAC TTAG ATCTAACTGTGAC TTATACATTTCATAC USA300HOU_2203 2346341 - 2346565 + | hypothetical protein TERM 2422 2347002 - 2347034 + T 76 -9.3 -3.0682 | opp_overlap 2347007, overlap 2347007 CCCACACAAACGCAA AAAAACACCTCGA CATAACA TCGAGGTGTTTTG TATATATATCGTCCG TERM 2423 2347029 - 2347007 - T 100 -10.6 -5.59564 | opp_overlap 2347007 2347002 ACAAACGCAAAAAAA CACCTCGACA TAA CATCGAGGTG TTTTGTATATATATC TERM 2424 2347007 - 2347029 + T 100 -9.2 -4.6645 | opp_overlap 2347007, overlap 2347002 ACAAACGCAAAAAAA CACCTCGA CATAACA TCGAGGTG TTTTGTATATATATC USA300HOU_2204 2348689 - 2347283 - | hypothetical protein TERM 2425 2347505 - 2347479 - G 73 -8.2 -3.53012 | opp_overlap 2347475 TTTTCTTTGGCTAAA TTCTTTATTTTC GAA GAAGATAAAGAA TTAAACTCCTCATTC clpA 2349954 - 2348818 - | endopeptidase ClpA TERM 2426 2349034 - 2349067 + g 83 -10.6 -3.17325 | overlap 2349032 TACTTTCTGCTTTTC TTCCTGTGTTAAAT ATAAAA ATTTAATACAGGAA TCTATTCTAGAAAAT USA300HOU_2206 2350746 - 2349955 - | hypothetical protein USA300HOU_2207 2352146 - 2351049 - | hypothetical protein TERM 2427 2351743 - 2351756 + g 77 -5.3 -4.8622 | TCTACAAGTAATTTT GCATT TACT AATGC TTTTTCATTCGAAAA TERM 2428 2352300 - 2352310 + r 82 -4 -5.58209 | opp_overlap 2352300 GCCTGTATATACGAA TCAT ATA ATGA TTTTTTTAAATTTGC TERM 2429 2352641 - 2352673 + r 83 -10.7 -3.02471 | opp_overlap 2352646, overlap 2352646 GCCGCAAAAACGCAA AAAAACACCTCGACA TAA TATCGAGGTGTTTTG TATATATCGTCCGAC TERM 2430 2352646 - 2352668 + r 100 -10.6 -4.65446 | opp_overlap 2352646, overlap 2352641 AAAAACGCAAAAAAA CACCTCGACA TAA TATCGAGGTG TTTTGTATATATCGT TERM 2431 2352668 - 2352646 - R 100 -12.8 -5.63857 | opp_overlap 2352641 2352646 AAAAACGCAAAAAAA CACCTCGACA TAA TATCGAGGTG TTTTGTATATATCGT rpsI 2353089 - 2352691 - | 30S ribosomal protein S9 TERM 2432 2352981 - 2353003 + g 77 -9.2 -3.18452 | GTAAGTATTCGCGTA CGTCACGGTT ATT AACTGTGATG TTACCTTCACCTGGT rplM 2353540 - 2353103 - | 50S ribosomal protein L13 TERM 2433 2353784 - 2353797 + r 70 -3.9 -5.08169 | GTCAATGGCAATCAG TCATT TTGT AATGA TTTTTTACGATGTAT truA2 2354583 - 2353780 - | tRNA pseudouridine synthase A USA300HOU_2211 2355394 - 2354588 - | cobalt ABC transporter TERM 2434 2355299 - 2355287 - G 71 -3.5 -5.04175 | TGAATGACAGAAAAA TATTA ATA TAATA AAAAGAAAAACAAAC USA300HOU_2212 2356244 - 2355384 - | cobalt transporter ATP-binding subunit USA300HOU_2213 2357050 - 2356241 - | cobalt transporter ATP-binding subunit TERM 2435 2356989 - 2356969 - G 83 -6.9 -4.75288 | opp_overlap 2356967 2356975 2356980 GTATATTAAAAGAAA CATCTTTCA ATG TGAAGGATG CATCACTTTGATATT TERM 2436 2357380 - 2357417 + r 81 -7.1 -4.67982 | opp_overlap 2357382, overlap 2357382 AAGTAAATATAAAGA AATCGGACTTAAAAACA TTTC TGTTCATAAGTCCGATA TTTTATTCAATAAAA TERM 2437 2357415 - 2357382 - R 100 -11.9 -4.73432 | opp_overlap 2357380 2357382 GTAAATATAAAGAAA TCGGACTTAAAAACA TTTC TGTTCATAAGTCCGA TATTTTATTCAATAA TERM 2438 2357382 - 2357415 + r 90 -9.7 -3.95554 | opp_overlap 2357382, overlap 2357380 GTAAATATAAAGAAA TCGGACTTAAAAACA TTTC TGTTCATAAGTCCGA TATTTTATTCAATAA rplQ 2357956 - 2357588 - | 50S ribosomal protein L17 rpoA 2358917 - 2357973 - | DNA-directed RNA polymerase subunit alpha rpsK 2359381 - 2358992 - | 30S ribosomal protein S11 TERM 2439 2359105 - 2359119 + g 76 -10 -2.86618 | overlap 2359107 2359110 GAATAGCTGATTCAC GACCTG GAC CAGGTC CTTTAACTGTTACTT TERM 2440 2359186 - 2359204 + g 73 -8.2 -3.54575 | opp_overlap 2359185 2359186, overlap 2359184 2359179 ATGCAGTTTCAGAAG CCATTTGT GCT GCAAATGG TGTTGATTTTTTAGA rpsM 2359770 - 2359405 - | 30S ribosomal protein S13 TERM 2441 2359663 - 2359673 + g 73 -4 -5.03145 | AGCTGATACGTTAGC TTCT TCA AGAA TTTTTTGAGCAGTTG rmpJ 2359906 - 2359793 - | 50S ribosomal protein L36 infA 2360156 - 2359938 - | translation initiation factor IF-1 adk 2360996 - 2360349 - | adenylate kinase secY1 2362305 - 2361013 - | preprotein translocase subunit SecY TERM 2442 2361831 - 2361821 - G 74 -6.8 -4.29508 | overlap 2361817 AGCCATATTAAGAAA GCAG TTC CTGC TGTCAAAACTAGTGC TERM 2443 2361953 - 2361979 + g 74 -6.7 -4.33819 | opp_overlap 2361953 2361952 2361959, overlap 2361955 AATGCTAAAGAAATT GCTAAATAACG AGTAA CGTTATTTAAC TTTCTTCTACCTACT TERM 2444 2362200 - 2362178 - G 81 -7.7 -4.30576 | opp_overlap 2362178 2362193 TGGGGATTATCAAAA GCTGCAGGA TTTAC TCCTGGAGC TGGTATATAAGTCCC rplO 2362745 - 2362305 - | 50S ribosomal protein L15 rpmD 2362941 - 2362762 - | 50S ribosomal protein L30 rpsE 2363458 - 2362958 - | 30S ribosomal protein S5 TERM 2445 2363259 - 2363272 + g 76 -3.8 -5.32565 | ACTAAATCTTTTTTA GCTG CTTCAA CAGC TTTTTTGATTGCTTC rplR 2363838 - 2363479 - | 50S ribosomal protein L18 rplF 2364405 - 2363869 - | 50S ribosomal protein L6 rpsH 2364828 - 2364430 - | 30S ribosomal protein S8 USA300HOU_2228 2365045 - 2364860 - | 30S ribosomal protein S14 rplE 2365607 - 2365068 - | 50S ribosomal protein L5 rplX 2365951 - 2365634 - | 50S ribosomal protein L24 TERM 2446 2365869 - 2365891 + g 76 -7.8 -4.06633 | ACACGGTCTTTTTTA GGTAGAGTAG CAA TTACTTTACC TTCTTTACCTTTGTC rplN 2366355 - 2365987 - | 50S ribosomal protein L14 rpsQ 2366650 - 2366387 - | 30S ribosomal protein S17 rpmC 2366883 - 2366674 - | 50S ribosomal protein L29 TERM 2447 2366748 - 2366765 + g 81 -7.7 -4.3953 | CAATCGTTTTTCTTA CTGTACG AATA CGTGCAG TTTCTTCTAATTGAC TERM 2448 2368663 - 2368704 + r 74 -8.1 -3.59079 | gap 1 TTGGGCGCCTCCCTT CTTATTATGTGCGTGCAGCT TTA AGCCGCACACCCA-AATAAG TTGATTATATTATTT TERM 2449 2370920 - 2370930 + r 83 -6.8 -5.0538 | ATGAAGCGCTTAGGT GCTG CGT CAGC TTTTTTAGCGTGACC TERM 2450 2372402 - 2372424 + r 100 -10.6 -5.4251 | opp_overlap 2372402 CTTCAAAGAAAAAAA CGACTACCAA TCA TTGGCAGTCG TTTTTTGTGTCTGGA TERM 2451 2372424 - 2372402 - R 100 -12.8 -5.95539 | opp_overlap 2372402 CTTCAAAGAAAAAAA CGACTACCAA TCA TTGGCAGTCG TTTTTTGTGTCTGGA USA300HOU_2234 2373775 - 2372441 - | NCS2 family nucleobase:cation symporter-2 TERM 2452 2373847 - 2373857 + r 74 -5.4 -4.98255 | opp_overlap 2373840 2373847 AAACAATACCAAAAG CGAA CTT TTCG TTTTTCTGATTCAAC topB 2376023 - 2373888 - | DNA topoisomerase III TERM 2453 2375628 - 2375652 + g 77 -5 -5.06816 | opp_overlap 2375628 2375633 TTTTTTAGTAACTGA GCTAATCCAT AATCG ACGGATTGGC TTTTTGTTACCAACT USA300HOU_2236 2376144 - 2376049 - | hypothetical protein USA300HOU_2237 2376120 - 2377097 + | acetyltransferase TERM 2454 2377114 - 2377144 + FH 83 -7 -5.1286 | opp_overlap 2377113 2377114 ACACCAAGCAAATAC CCTACAGTACAT CATTAGC ATGTATTGTGGG TTTTTCTACTTTTTG glcU 2377278 - 2378141 + | DMT superfamily drug/metabolite transporter USA300HOU_2239 2378389 - 2378258 - | hypothetical protein TERM 2455 2378515 - 2378461 - R 100 -12.5 -3.91032 | gap 1, opp_overlap 2378461 2378464 2378466, overlap 2378466 CAACTATGTCATAAA TAAAAGCCCCCTTT-TCACAATATAC ATTT ACATATTGTGGTAAAGGGGGCTCTCA TTTTCTACGAATACT TERM 2456 2378461 - 2378515 + r 88 -8.9 -4.3898 | gap 1, opp_overlap 2378461 2378466, overlap 2378464 2378466 CAACTATGTCATAAA TAAAAGCCCCCTTT-TCACAATAT ACATTTAC ATATTGTGGTAAAGGGGGCTCTCA TTTTCTACGAATACT TERM 2457 2378464 - 2378512 + r 81 -10.6 -3.17598 | gap 1, opp_overlap 2378461 2378466, overlap 2378461 2378466 CTATGTCATAAATAA AAGCCCCCTTT-TCACAATAT ACATTTAC ATATTGTGGTAAAGGGGGCTC TCATTTTCTACGAAT TERM 2458 2378510 - 2378466 - R 100 -12.4 -4.99645 | gap 1, opp_overlap 2378464 2378461 2378466, overlap 2378461 ATGTCATAAATAAAA GCCCCCTTT-TCACAATATAC ATTT ACATATTGTGGTAAAGGGGGC TCTCATTTTCTACGA TERM 2459 2378466 - 2378510 + r 100 -13.2 -3.14587 | gap 1, opp_overlap 2378466 2378461, overlap 2378464 2378461 ATGTCATAAATAAAA GCCCCCTTT-TCACAATAT ACATTTAC ATATTGTGGTAAAGGGGGC TCTCATTTTCTACGA USA300HOU_2240 2379486 - 2378560 - | malonate efflux carrier USA300HOU_2241 2379601 - 2379765 + | hypothetical protein USA300HOU_2242 2380010 - 2380327 + | hypothetical protein TERM 2460 2380460 - 2380507 + T 100 -12.3 -3.4033 | opp_overlap 2380449 2380465, overlap 2380465 AAAATTTCAAATTTT AAAAAGCCATAAAAGTAGTCA ATATCA TGACCGCTTTTATGGCTTTTA TATTATCTATCGTTT TERM 2461 2380502 - 2380465 - T 100 -12.2 -4.70879 | opp_overlap 2380465 2380460 TTCAAATTTTAAAAA GCCATAAAAGTAGTCA ATATCA TGACCGCTTTTATGGC TTTTATATTATCTAT TERM 2462 2380465 - 2380502 + T 100 -12.2 -4.77867 | opp_overlap 2380465, overlap 2380460 TTCAAATTTTAAAAA GCCATAAAAGTAGTCA ATATCA TGACCGCTTTTATGGC TTTTATATTATCTAT USA300HOU_2243 2383681 - 2380514 - | resistance-nodulation-cell division acriflavin:proton (H+) antiporter TERM 2463 2381350 - 2381361 + g 79 -4.4 -5.31877 | TACCATTTTCTTTAA CAGT CGTA ACTG TTTTTTCTGGTAAGT TERM 2464 2382070 - 2382082 + g 71 -3.3 -5.11613 | overlap 2382058 GATGTTGTTTATTAC GACGT TTA ACGCC TTTTTTAAATAGTGT TERM 2465 2383783 - 2383749 - R 78 -4.3 -5.41143 | opp_overlap 2383749 TATTGTGTAAAAAAA TCTGAACGCAAATGA CAGTC TTATGAGCGTTCAGA TTTCAGTCGTTAATC fmhB 2385063 - 2383798 - | peptidoglycan pentaglycine interpeptide biosynthesis protein FmhB TERM 2466 2383841 - 2383857 + g 70 -8.1 -3.23598 | TTAATTTTAGCTTTT GTTAAAC GCG GTTTAAC TTGCTCAATTAATTG USA300HOU_2245 2386459 - 2385695 - | hypothetical protein TERM 2467 2386597 - 2386581 - H 70 -5.1 -4.57569 | opp_overlap 2386580 2386582, overlap 2386582 CTATTGTTGTAAAAA GGTTAGC TAA GCTAACT ATTTTGTCTTAGGAG TERM 2468 2386582 - 2386596 + H 82 -8.6 -3.94773 | opp_overlap 2386581 2386582, overlap 2386580 TATTGTTGTAAAAAG GTTAGC TAA GCTAAC TATTTTGTCTTAGGA TERM 2469 2386596 - 2386582 - H 74 -8.6 -3.3422 | opp_overlap 2386582 2386580, overlap 2386581 TATTGTTGTAAAAAG GTTAGC TAA GCTAAC TATTTTGTCTTAGGA marR 2386621 - 2387061 + | MarR family transcriptional regulator USA300HOU_2247 2387054 - 2388265 + | major facilitator transporter USA300HOU_2248 2388717 - 2388367 - | hypothetical protein USA300HOU_2249 2388843 - 2389013 + | hypothetical protein TERM 2470 2389130 - 2389150 + T 72 -8.3 -3.27907 | TTCGTCACCTTCTGT GTTGGGG CCCCGTT CCCCAAC TTGCATTGTCTGTAG TERM 2471 2389222 - 2389238 + T 72 -8 -3.68024 | TGCACATTATTGTAA GCTGAC TTTCT GTCAGC TTCTGTGTTGGGGCC moaA 2390430 - 2389408 - | molybdenum cofactor biosynthesis protein A mobA 2391049 - 2390450 - | molybdopterin-guanine dinucleotide biosynthesis protein A moaD 2391289 - 2391056 - | molybdopterin synthase small subunit moaE 2391741 - 2391295 - | molybdopterin synthase large subunit TERM 2472 2391761 - 2391779 + r 77 -4.6 -5.19819 | overlap 2391764 TTCAATCCTCTATGT TAATTGTG TAT CACAATCA TTTTTAATTTTATTT mobB 2392240 - 2391755 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 2473 2392190 - 2392176 - G 71 -6.4 -4.1822 | TGTGACTTTAAGAAA GAGACA ATA TGCCTC ATCAATGTTGTCTTA TERM 2474 2392200 - 2392211 + g 73 -4.4 -4.85599 | TGCCTCATCAATGTT GTCT TACC AGAC TTTTTGTAACCTACA moeA 2393496 - 2392237 - | molybdopterin biosynthesis protein MoeA moaC 2393559 - 2394053 + | molybdenum cofactor biosynthesis protein C moaB 2394561 - 2394055 - | molybdopterin cofactor biosynthesis protein MoaB moeB 2395596 - 2394592 - | molybdopterin biosynthesis protein MoeB modC 2396371 - 2395766 - | molybdenum ABC transporter ATP-binding protein modB 2397043 - 2396372 - | molybdenum ABC transporter membrane protein TERM 2475 2396781 - 2396755 - G 100 -12.4 -3.965 | overlap 2396748 GTGGAAAACTAACAA TGACAGATGCTA TCA CAGCACCTGTCA AAGTGAACACTACAG modA 2397839 - 2397057 - | molybdenum ABC transporter ATP-binding protein TERM 2476 2398096 - 2398076 - H 70 -5.5 -4.21827 | opp_overlap 2398090 GCAAATATGTTAAAA TTTTAAGCA AAT TGCTTTAAA ATAAAGTTTAAGCTA fdhD 2398129 - 2398926 + | formate dehydrogenase accessory protein TERM 2477 2399028 - 2399064 + T 100 -13.2 -5.58179 | opp_overlap 2399028 AAAACAATTTAAAAA GCAGTAAGTTGATTTC TACTC GAAACCAGCTTACTGC TTTTTTATTCTAATA TERM 2478 2399064 - 2399028 - T 100 -13.2 -4.85195 | opp_overlap 2399028 AAAACAATTTAAAAA GCAGTAAGTTGATTTC TACTC GAAACCAGCTTACTGC TTTTTTATTCTAATA USA300HOU_2263 2399868 - 2399098 - | acetyltransferase USA300HOU_2264 2400494 - 2399940 - | biotin biosynthesis protein USA300HOU_2265 2401556 - 2400615 - | purine nucleosidase TERM 2479 2401324 - 2401311 - G 79 -4.5 -5.24129 | opp_overlap 2401311 TGCGTCCATAAAAAA GGCAT GCAT ACGCC ATTCTTTAGGAAATG TERM 2480 2401931 - 2401885 - R 82 -6.9 -4.87665 | gap 1, opp_overlap 2401899 2401901 TTCTAGCTATAAAAA TAAGAGCCTAATACAATATCAA AAGA TTGATAT-GTTTCAGACTCTCA TTTCACTAACTTATA USA300HOU_2266 2402863 - 2401955 - | iron (Fe+3) ABC transporter binding protein USA300HOU_2267 2404231 - 2403077 - | acyl-CoA dehydrogenase TERM 2481 2404418 - 2404376 - R 100 -13.9 -4.87665 | gap 1, opp_overlap 2404377 2404380 2404387, overlap 2404378 TTTTATCCATAAAAA TA-CACCTTAAACTATACAA TTCG CTGTATAGTTTAAGGTGATA TTCAAACAATATTAG TERM 2482 2404377 - 2404416 + r 100 -13.9 -3.03007 | opp_overlap 2404376 2404378, overlap 2404380 2404387 TTTATCCATAAAAAT ACACCTTAAACTATACA ATTCGC TGTATAGTTTAAGGTGA TATTCAAACAATATT TERM 2483 2404415 - 2404378 - R 100 -18.1 -4.06182 | opp_overlap 2404377 2404380 2404387, overlap 2404376 TTATCCATAAAAATA CACCTTAAACTATACAA TTCG CTGTATAGTTTAAGGTG ATATTCAAACAATAT TERM 2484 2404380 - 2404413 + r 100 -14.2 -2.73994 | opp_overlap 2404378 2404376, overlap 2404377 2404387 ATCCATAAAAATACA CCTTAAACTATACA ATTCGC TGTATAGTTTAAGG TGATATTCAAACAAT USA300HOU_2268 2405362 - 2404448 - | UT family urea transporter ureA 2405613 - 2405915 + | urease subunit gamma TERM 2485 2406119 - 2406133 + G 79 -10 -3.28001 | AACATTTAGATATTC CAGCTG GAG CAGCTG TTCGATTTGAACCTG ureB 2405929 - 2406339 + | urease subunit beta TERM 2486 2407882 - 2407872 - g 74 -6.8 -4.37711 | GCATTAAATTTAAAA CGCA TGG TGCG TCCAGTTAAAAATAT ureC 2406336 - 2408051 + | urease subunit alpha ureE 2408064 - 2408516 + | urease accessory protein UreE TERM 2487 2408544 - 2408556 + G 71 -7.7 -3.5393 | AAGATTATTTCAGTT CTGTG ATT CACAG TTTCCAACAGGTGCT ureF 2408509 - 2409198 + | urease accessory protein UreF ureG 2409211 - 2409825 + | urease accessory protein UreG ureD 2409825 - 2410661 + | urease accessory protein UreD TERM 2488 2410670 - 2410722 + T 100 -13.2 -3.89336 | opp_overlap 2410670 ATATTAAAATAAAAA GACTAGT-GTACCTTGTTTCAAGCTT AAT AAGCT-GAAATAAGGTATGGCTAGTC TTTAACTTTAATTAA TERM 2489 2410722 - 2410670 - T 90 -6.6 -5.52079 | opp_overlap 2410670 ATATTAAAATAAAAA GACTAG-TGTACCTTGTTTCAAGCTT AAT AAGCT-GAAATAAGGTATGGCTAGTC TTTAACTTTAATTAA sarR 2411197 - 2410850 - | staphylococcal accessory regulator A TERM 2490 2411105 - 2411117 + g 80 -6.3 -4.78477 | ATAAATTTCTTCATA GTTCA AAT TGAAC TTCTTTTTTGTATCT USA300HOU_2277 2411951 - 2411625 - | hypothetical protein sarY 2412758 - 2412015 - | hypothetical protein USA300HOU_2279 2414739 - 2412784 - | transcriptional regulator TERM 2491 2414988 - 2414998 + H 74 -5.4 -4.97402 | ATAGAAACTTGATCG TTCG TGT CGAA TTTTTATGCATTTTC TERM 2492 2415135 - 2415149 + H 77 -7.2 -4.20797 | opp_overlap 2415134 GCCGTAGTTATAAGT TTTGCA AAA TGCAAA TTTCTATACTTTTAA USA300HOU_2280 2415349 - 2416152 + | secretory antigen SsaA TERM 2493 2416173 - 2416201 + T 100 -14.7 -5.4387 | GATGGCTATGTTTAC GCCAACAAGGTTT CAA GAGCCTTGTTGGC TTTTTTAATTTCTAT USA300HOU_2281 2416411 - 2416169 - | hypothetical protein TERM 2494 2416268 - 2416225 - G 100 -9.9 -5.52384 | opp_overlap 2416225 TTTCTATGAAAAAAA TCGAATTGGTAAAAATC TCAAAATTTC GATTTTCACCAATCCGA TTCACTCTGTAATAA TERM 2495 2416347 - 2416292 - G 80 -6.5 -4.67968 | gap 2 GTAATAAAGAATAAA CAACATACAGCC-A-TTGACACACCCA AATT TAGGCATGTCAAATCGGCTATACATTG ATAAATTTTTAGTTA nhaC 2417985 - 2416585 - | NhaC family Na(+)/H(+) antiporter TERM 2496 2417692 - 2417666 - G 82 -5.2 -5.21709 | overlap 2417668 GCTGATATTAAAAAA TAGCTTGGATTC AAT AAATCTAAGCCA TAATAAATCAAGGCT TERM 2497 2417774 - 2417805 + g 100 -9.5 -4.91459 | opp_overlap 2417770 2417771, overlap 2417770 2417769 ATAATTAAAATTGCA GGCATTGCAGTAT TTAAAC GTTCTGCAATGCC TTTTTCTAAATCTTG USA300HOU_2283 2419162 - 2418080 - | D-octopine dehydrogenase TERM 2498 2419249 - 2419227 - H 82 -6.3 -5.18995 | opp_overlap 2419227 2419248 AAGACAATATAAAAA TGATGCGAA TTCAT TACGCATCA TTATAAATGTTAAGT USA300HOU_2284 2419410 - 2419832 + | hypothetical protein TERM 2499 2419884 - 2419917 + F 100 -12.8 -6.04419 | TTAATCTCATTGTAA CTTTGACTAATTTT TATTAC AAAATTAGTCAAAG TTTTTTTATTCTTTT ssaA 2420069 - 2420569 + | secretory antigen SsaA TERM 2500 2420635 - 2420659 + F 100 -8 -5.69023 | gap 1 TCATCAAAAAACTTT GAGCTT-TCCT TTAT AGGAGAAGCTC TTTTTTTGCTATTTT USA300HOU_2286 2420931 - 2421884 + | (R)-2-hydroxyacid dehydrogenase TERM 2501 2421965 - 2421917 - T 100 -9.8 -4.9934 | opp_overlap 2421923, overlap 2421920 2421923 ATAACATTATAAAAA CAAGAACCCCCATATGTTGA GCTCTCGTT TCAACATACGGGGGTTTTCA TATTGTTGTATTATT TERM 2502 2421962 - 2421920 - T 100 -11.5 -4.57057 | opp_overlap 2421923, overlap 2421917 2421923 ACATTATAAAAACAA GAACCCCCATATGTTGA GCTCTCGTT TCAACATACGGGGGTTT TCATATTGTTGTATT TERM 2503 2421923 - 2421959 + T 100 -11.7 -4.50841 | opp_overlap 2421920 2421917 2421923 TTATAAAAACAAGAA CCCCCATATGTTGAG CTCTCGT TTCAACATACGGGGG TTTTCATATTGTTGT TERM 2504 2421959 - 2421923 - T 100 -13.2 -4.36508 | opp_overlap 2421923, overlap 2421920 2421917 TTATAAAAACAAGAA CCCCCATATGTTGA GCTCTCGTT TCAACATACGGGGG TTTTCATATTGTTGT USA300HOU_2287 2423100 - 2421976 - | hypothetical protein TERM 2505 2422323 - 2422304 - G 77 -5.1 -5.02323 | overlap 2422299 CGACCATAAACAAAA GATTTGA GTGGTT TCAAATC ATAAATATTATGCAA TERM 2506 2423301 - 2423312 + r 74 -2.2 -5.5074 | opp_overlap 2423291, overlap 2423291 2423283 ATATAGCATATTTGA TGCT ATAT AGCG TTTTTTGTTAGGTTA TERM 2507 2423402 - 2423355 - R 95 -11.7 -3.42583 | gap 2, opp_overlap 2423364, overlap 2423344 2423356 2423364 CTAACACACTCAGAA TGCGCTAAAGGAGCTCGAAACAA TAAA TTGTTCC-AGCTCCTTTAA-GCA CCGATGTCTTATTTA TERM 2508 2423403 - 2423356 - R 100 -13.1 -2.65068 | opp_overlap 2423364, overlap 2423344 2423355 2423364 TAACACACTCAGAAT GCGCT-AAAGGAGCTCGAAACAA TAAA TTGTTCC-AGCTCCTTTAAGCAC CGATGTCTTATTTAT TERM 2509 2423364 - 2423394 + r 71 -7.7 -3.53563 | gap 1, opp_overlap 2423364 2423355 2423356 TCAGAATGCGCTAAA GGAGCTCGAAACAA TAAA TTGTTCC-AGCTCC TTTAAGCACCGATGT TERM 2510 2423394 - 2423364 - R 83 -9.9 -3.58533 | gap 1, opp_overlap 2423364, overlap 2423355 2423356 TCAGAATGCGCTAAA GGAGCTCGAAACAA TAAA TTGTTCC-AGCTCC TTTAAGCACCGATGT lytA 2424187 - 2423411 - | N-acetylmuramoyl-L-alanine amidase USA300HOU_2289 2424442 - 2424209 - | hypothetical protein TERM 2511 2424626 - 2424591 - R 100 -10.8 -4.7373 | opp_overlap 2424618, overlap 2424624 TTATTCCATCAAAAA CACCCTTTTTAATTTT TACA AAAATTAAAAAAAGTG CTCCTACACTGCTTG TERM 2512 2424654 - 2424624 - R 95 -6.3 -5.85011 | gap 1, opp_overlap 2424618, overlap 2424591 CAAAAATTAAAAAAA GTGCTCCTACACTG CTTG CA-TGTAGAAACAC TTTTTCATTGTAATG USA300HOU_2290 2425143 - 2424670 - | hypothetical protein USA300HOU_2291 2428097 - 2425143 - | formate dehydrogenase alpha subunit TERM 2513 2425973 - 2425992 + g 73 -7.2 -3.92746 | GTTGAATACGACGTT CGGTATTT GTAA AAGTACCG TCTTTTTCAAGTGAA TERM 2514 2428570 - 2428613 + r 93 -11.2 -3.56056 | opp_overlap 2428570, overlap 2428566 AGGCATTAAATAAAA TAGCCCATAAATACAAAGTG TTAT CACCTTCTATTTACGGGCTA TTAGTTCTATTCGTT TERM 2515 2428613 - 2428570 - R 100 -15.6 -4.9448 | opp_overlap 2428570 2428566 AGGCATTAAATAAAA TAGCCCATAAATACAAAGTG TTAT CACCTTCTATTTACGGGCTA TTAGTTCTATTCGTT USA300HOU_2292 2429655 - 2428699 - | transcriptional regulator TERM 2516 2428867 - 2428891 + g 81 -7.4 -4.39318 | opp_overlap 2428870 CGTATTCAAATCACC TAATGTTAAA TCTGT TTTAACATTA TTTTGAATTTCATTC suhB 2430576 - 2429779 - | inositol-phosphate phosphatase TERM 2517 2430185 - 2430196 + g 73 -4.4 -4.84359 | CCTTCTCCTCGTATT GCTT TATA AAGC TTTTTATGCGGATAA TERM 2518 2430699 - 2430677 - H 100 -9.2 -5.64274 | TTATGCATAAAAAAA TCGGCTAG TCACGTG CTAGCCGA CAAATAGAAAGGAAA USA300HOU_2294 2430961 - 2431653 + | transcriptional regulator TERM 2519 2431651 - 2431706 + T 95 -10.9 -3.91032 | gap 1, opp_overlap 2431658, overlap 2431658 AACCCCATCGATTCC TAAAAAACAGCAGTAAGATGATTTTC AATTA GAAAAT-ATCTTGCTGCTGTTCTCTA TTTATACAATACTTC TERM 2520 2431699 - 2431658 - T 100 -11.2 -5.03314 | gap 1, opp_overlap 2431651 2431658 TCGATTCCTAAAAAA CAGCAGTAAGATGATTTTC AATTA GAAAAT-ATCTTGCTGCTG TTCTCTATTTATACA TERM 2521 2431658 - 2431699 + T 100 -13.4 -3.80279 | gap 1, opp_overlap 2431658, overlap 2431651 TCGATTCCTAAAAAA CAGCAGTAAGATGATTTTC AATTA GAAAAT-ATCTTGCTGCTG TTCTCTATTTATACA TERM 2522 2432258 - 2432225 - T 100 -14.9 -5.22312 | opp_overlap 2432225 ATGCATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTCATTGCCTA TERM 2523 2432225 - 2432258 + T 100 -12.7 -5.28481 | opp_overlap 2432225 ATGCATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTCATTGCCTA USA300HOU_2296 2433037 - 2432300 - | hypothetical protein USA300HOU_2297 2433086 - 2433415 + | hypothetical protein TERM 2524 2433639 - 2433664 + F 81 -9.3 -3.57263 | opp_overlap 2433644 2433646, overlap 2433642 CAGTATGACTTACGG TAATATATCAA TATA TTGATATATTA TTTGCACATGGGAGT TERM 2525 2433642 - 2433661 + F 71 -6.6 -3.92542 | opp_overlap 2433644 2433646, overlap 2433639 TATGACTTACGGTAA TATATCAA TATA TTGATATA TTATTTGCACATGGG USA300HOU_2298 2433860 - 2434732 + | transcriptional regulator TERM 2526 2434867 - 2434919 + T 84 -8.6 -4.32436 | opp_overlap 2434870 2434874, overlap 2434870 2434874 2434914 AATTTCTTATATTAA AAACAAACGCAGTTGATTAACGGA TTCAT TCCATATATCAATTGCGTTTGTTA TTTTAATAATGCTAT TERM 2527 2434870 - 2434916 + T 95 -10.3 -4.27443 | opp_overlap 2434870 2434874, overlap 2434867 2434874 2434914 TTCTTATATTAAAAA CAAACGCAGTTGATTAACGGA TTCAT TCCATATATCAATTGCGTTTG TTATTTTAATAATGC TERM 2528 2434916 - 2434870 - T 100 -10.3 -4.8048 | opp_overlap 2434870 2434867 2434874 2434914, overlap 2434874 TTCTTATATTAAAAA CAAACGCAGTTGATTAACGGA TTCAT TCCATATATCAATTGCGTTTG TTATTTTAATAATGC TERM 2529 2434874 - 2434912 + T 72 -5.3 -4.70107 | opp_overlap 2434870 2434874, overlap 2434870 2434867 TATATTAAAAACAAA CGCAGTTGATTAACGGA TTCAT TCCATATATCAATTGCG TTTGTTATTTTAATA TERM 2530 2434912 - 2434874 - T 74 -5.3 -4.94262 | opp_overlap 2434874 2434870 2434867, overlap 2434870 TATATTAAAAACAAA CGCAGTTGATTAACGGA TTCAT TCCATATATCAATTGCG TTTGTTATTTTAATA USA300HOU_2299 2436498 - 2435119 - | APC family amino acid-polyamine-organocation transporter TERM 2531 2436282 - 2436260 - G 82 -10 -3.52896 | opp_overlap 2436260 GCAGGATGTATATAA TCACTTGCAA ATG TTGCAAATGA TCCTGTTGTAGGGTT USA300HOU_2300 2436778 - 2437134 + | hypothetical protein USA300HOU_2301 2439241 - 2438324 - | BASS family bile acid:sodium (Na+) symporter USA300HOU_2302 2439509 - 2440039 + | hypothetical protein TERM 2532 2440045 - 2440094 + T 95 -6.2 -5.86465 | gap 3, opp_overlap 2440049 2440052, overlap 2440052 TATATCATAATAAAA GACACAT--CTATACGATGATCATT TAC AATGATTG-CGTATAGTGATGTGTC TTTTTTTGTATTATT USA300HOU_2303 2441709 - 2440105 - | PTS family arbutin-salicin-cellobiose (ASC) porter component IIBC TERM 2533 2441866 - 2441882 + H 75 -4.5 -5.01732 | opp_overlap 2441876 TATAATCAGATTATC TTTTCAT ATA GTGAAAA TTTTTTCACGACCTT USA300HOU_2304 2442039 - 2442803 + | transcriptional regulator USA300HOU_2305 2443367 - 2442861 - | hypothetical protein TERM 2534 2442931 - 2442919 - G 71 -7.7 -3.69092 | opp_overlap 2442927 AACATCAATTCGAAA CCATG CAC CATGG CATCATGATATTCTT USA300HOU_2306 2444913 - 2443534 - | NhaC family Na(+)/H(+) antiporter TERM 2535 2444809 - 2444830 + g 73 -3.7 -5.04175 | opp_overlap 2444806 2444807, overlap 2444812 AAATAATAACAAGGG GAATAATGC CCAA GCATTGCTC TTTTTATGTACTTCC TERM 2536 2444908 - 2444875 - G 70 -4 -4.8622 | gap 1, opp_overlap 2444877, overlap 2444877 CTTTCCAATTAAAAA TACCTCTTTCTCACA AACGA TG-AAGAAAGAGGTT TTCATGTGCTTTACC TERM 2537 2444877 - 2444906 + g 72 -5.9 -4.40894 | gap 1, opp_overlap 2444875 2444877 TTCCAATTAAAAATA CCTCTTTC-TCA CAAACGA TGAAGAAAGAGG TTTTCATGTGCTTTA USA300HOU_2307 2445641 - 2445072 - | hypothetical protein TERM 2538 2445294 - 2445312 + g 74 -6.1 -4.58303 | TAGACGCGTATTTTT TATACTG ATTCC CAGTATA TTTTCTAATATTTGA TERM 2539 2446034 - 2446007 - R 79 -7.8 -4.28045 | overlap 2446004 AGAGTATTAAAATAA GCCGATAAAGAT ACAC ACCTTTACCGAC TATTTAAAATACACT USA300HOU_2308 2447009 - 2446128 - | dehydrogenase USA300HOU_2309 2448241 - 2447120 - | M20D subfamily peptidase TERM 2540 2448511 - 2448466 - R 100 -15.1 -3.00946 | opp_overlap 2448472 2448499, overlap 2448472 TGTTTTTACAAACCA CAAAAAGCTCTAAACATTAGT TTAA ACCAATGCTTAGAGCTTTCTA ATTATTTTATGCTTT TERM 2541 2448505 - 2448472 - R 100 -14.1 -5.06735 | opp_overlap 2448472 2448499, overlap 2448466 TACAAACCACAAAAA GCTCTAAACATTAGT TTAA ACCAATGCTTAGAGC TTTCTAATTATTTTA TERM 2542 2448472 - 2448505 + r 91 -9.7 -4.19947 | opp_overlap 2448472 2448466, overlap 2448499 TACAAACCACAAAAA GCTCTAAACATTAGT TTAA ACCAATGCTTAGAGC TTTCTAATTATTTTA hutI 2449756 - 2448518 - | imidazolonepropionase TERM 2543 2449456 - 2449480 + g 74 -6.5 -4.27617 | opp_overlap 2449456, overlap 2449457 CACCCATTTCTAATA TTTCAAGGTAA GAC TTACCTTGACG TTTTAATGACATCTC hutU 2451417 - 2449756 - | urocanate hydratase TERM 2544 2452357 - 2452337 - g 90 -3.9 -5.84432 | TAGAATATAAAAAAA TTCGTCCAA ACT TAGGCCGAA AAATTTATATCAATT USA300HOU_2312 2451577 - 2452461 + | LysR family transcriptional regulator fosB 2452583 - 2453002 + | fosfomycin resistance protein FosB TERM 2545 2453158 - 2453121 - T 84 -8.6 -4.31608 | opp_overlap 2453120 2453121 AACAAACATAAATAA GCAGTAAGATGACT ACAACTTAAG AGTCTTCTTACTGC AATTATTTTTCAAAT TERM 2546 2453121 - 2453158 + T 70 -8.6 -2.54233 | opp_overlap 2453121, overlap 2453120 AACAAACATAAATAA GCAGTAAGATGACT ACAACTTAAG AGTCTTCTTACTGC AATTATTTTTCAAAT hutG 2454193 - 2453258 - | formimidoylglutamase TERM 2547 2454521 - 2454533 + G 78 -7.7 -4.1523 | TTTTCAATGGGCAAT GACGA TTT TCGTC TTCTTTGTCATTACA TERM 2548 2455728 - 2455711 - g 95 -8.5 -5.15381 | AACATATCGAAAAAA CTGAAGA ACAA TCTTCAG ATAAAAACAAATAAT USA300HOU_2315 2454483 - 2455742 + | hypothetical protein TERM 2549 2455750 - 2455791 + T 100 -16.1 -4.60143 | gap 1, opp_overlap 2455740 2455750 ACAAATAATAACAAA GCGCTTGCTAGTA-CCTCTT AAA AAGATGATGCTAGCAAGCGC TTTTCTATACTATAT TERM 2550 2455791 - 2455750 - T 100 -16.1 -4.64159 | gap 1, opp_overlap 2455750, overlap 2455740 ACAAATAATAACAAA GCGCTTGCTAGTACC-TCTT AAA AAGATGATGCTAGCAAGCGC TTTTCTATACTATAT USA300HOU_2316 2456494 - 2455808 - | ribose-5-phosphate isomerase USA300HOU_2317 2456668 - 2457321 + | hypothetical protein USA300HOU_2318 2457564 - 2457451 - | hypothetical protein USA300HOU_2319 2458576 - 2457557 - | aldose 1-epimerase USA300HOU_2320 2458932 - 2458606 - | hypothetical protein USA300HOU_2321 2459166 - 2458981 - | hypothetical protein TERM 2551 2459143 - 2459090 - G 100 -8.5 -5.88197 | gap 1, opp_overlap 2459090 2459116 CTAAATATAAAAAAA TAAGAGTAACACGCTTTCATCATCAT TTT AT-ATGATAAATGTGTGTCACTCTCA TCAATTTTATTTTTT USA300HOU_2322 2460382 - 2459150 - | ABC transporter ATP-binding protein TERM 2552 2460085 - 2460106 + g 82 -3.1 -5.73672 | overlap 2460077 2460087 GATTCACCTTGATAA TATAAGCTT TATC AAGTTTATG TTTTTTTACTTCTTT USA300HOU_2323 2461274 - 2460375 - | ABC transporter ATP-binding protein TERM 2553 2461495 - 2461470 - R 86 -6.2 -5.42259 | opp_overlap 2461470 TTATTTGTAAAAAAA TATCCCAGCA TCATTG TGCCGAGATA TTTATATCATTACAA USA300HOU_2324 2462176 - 2461505 - | hypothetical protein USA300HOU_2325 2462551 - 2463159 + | DNA-3-methyladenine glycosylase TERM 2554 2463214 - 2463251 + F 72 -2.7 -5.42975 | gap 1 TATCTCCTTATAAGT CAATCAATCGTGCCGTCA ACA TG-CGGATGGGTTGATTG TTTTTCTTTGTATCC USA300HOU_2326 2463496 - 2464704 + | ESS family glutamate:sodium (Na+) symporter TERM 2555 2464754 - 2464717 - T 100 -21.7 -2.7213 | opp_overlap 2464721 2464726, overlap 2464721 2464726 TAAACACCAAACTCA TAAATAAAAGAGGAGGC CTTC GCCTCCTCTTTTATTTA TCCTCGATGTATATT TERM 2556 2464721 - 2464750 + T 100 -18.1 -3.98661 | opp_overlap 2464717 2464721 2464726, overlap 2464726 CACCAAACTCATAAA TAAAAGAGGAGGC CTTC GCCTCCTCTTTTA TTTATCCTCGATGTA TERM 2557 2464750 - 2464721 - T 100 -18.1 -4.03204 | opp_overlap 2464721 2464726, overlap 2464717 2464726 CACCAAACTCATAAA TAAAAGAGGAGGC CTTC GCCTCCTCTTTTA TTTATCCTCGATGTA TERM 2558 2464726 - 2464745 + T 100 -13.6 -5.02323 | opp_overlap 2464721 2464717 2464726, overlap 2464721 AACTCATAAATAAAA GAGGAGGC CTTC GCCTCCTC TTTTATTTATCCTCG TERM 2559 2464745 - 2464726 - T 100 -13.6 -5.01553 | opp_overlap 2464726 2464721, overlap 2464721 2464717 AACTCATAAATAAAA GAGGAGGC CTTC GCCTCCTC TTTTATTTATCCTCG USA300HOU_2327 2465801 - 2464752 - | isopentenyl pyrophosphate isomerase USA300HOU_2328 2466779 - 2465832 - | MIT family metal ion transporter CorA USA300HOU_2329 2466876 - 2467367 + | hypothetical protein USA300HOU_2330 2467364 - 2467783 + | hypothetical protein TERM 2560 2467826 - 2467876 + T 81 -10.6 -3.11905 | opp_overlap 2467826, overlap 2467824 2467823 TTTTCAAAAACAAAA CCCAATTACGTTTTCATGTCAAAT ATC ATCTTGCATGAAATCGTAACTGGG TCATTTATATGTTAT TERM 2561 2467876 - 2467826 - T 100 -12.8 -5.26119 | opp_overlap 2467826 2467824 2467823 TTTTCAAAAACAAAA CCCAATTACGTTTTCATGTCAAAT ATC ATCTTGCATGAAATCGTAACTGGG TCATTTATATGTTAT USA300HOU_2331 2468811 - 2467891 - | esterase USA300HOU_2332 2469019 - 2469657 + | hypothetical protein TERM 2562 2469839 - 2469811 - T 93 -5.4 -6.08342 | gap 1 CAACAAATAAAAAAA GTATCGATAACCA TATT TGGC-ACCGATAC TTTAAAAATCATGTC USA300HOU_2333 2471834 - 2469903 - | major facilitator superfamily multidrug:cation symporter TERM 2563 2470857 - 2470841 - G 77 -5.9 -4.74801 | opp_overlap 2470834 2470847 CAATCGTACTAAAAA TGATACC TGG GATATCA GCTTTAGGGTTTGTT USA300HOU_2334 2472494 - 2471847 - | hypothetical protein TERM 2564 2472450 - 2472429 - GH 84 -5.9 -5.27023 | ATTCCAAAAATAAAA GCCAGCAAT CCCA ATTGCTAAC AGTACAACAACCGTA USA300HOU_2335 2472493 - 2472618 + | hypothetical protein USA300HOU_2336 2472615 - 2473166 + | TetR family transcriptional regulator TERM 2565 2473272 - 2473301 + T 95 -8 -5.65496 | opp_overlap 2473272 CTATCAATATAAAAA TGCCGAGATT TCCACATAAT AATCTCGGCA TTTTTATTTTTGATG TERM 2566 2473301 - 2473272 - T 90 -8 -5.1244 | opp_overlap 2473272 CTATCAATATAAAAA TGCCGAGATT TCCACATAAT AATCTCGGCA TTTTTATTTTTGATG tcaB 2474604 - 2473396 - | major facilitator superfamily teicoplanin:cation symporter TERM 2567 2474827 - 2474779 - R 90 -7.9 -5.24129 | gap 2, opp_overlap 2474780 2474782, overlap 2474782 TTTTTCCACAAAAAA CAATCCCTTCAAAGTAATTCACA CTAAT TGTAAA-TACTTTGAAAGGA-TG TTGTTTGTATTCCAT TERM 2568 2474825 - 2474782 - R 100 -10.7 -4.72201 | gap 1, opp_overlap 2474780 2474782, overlap 2474779 TTCCACAAAAAACAA TCCCTTCAAAGTAATTCACA CTAAT TGTAAA-TACTTTGAAAGGA TGTTGTTTGTATTCC tcaA 2476255 - 2474873 - | teicoplanin resistance protein TcaA TERM 2569 2476488 - 2476442 - R 70 -4.1 -4.95876 | gap 1 AATTATAACTAAAAA GAAGGTGTTCAATACATA CATATTTAGTCT TATAT-TTGAACACCTTC AAAAACCTATTTATG tcaR 2476950 - 2476495 - | transcriptional regulator TcaR USA300HOU_2340 2477145 - 2478113 + | hypothetical protein TERM 2570 2478247 - 2478302 + T 82 -8.7 -3.91032 | gap 1, opp_overlap 2478254, overlap 2478254 GGACATTAATCCCTA AAAAAAACAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTGTTCTCTA TTTATACAATACTTC TERM 2571 2478254 - 2478295 + T 100 -15.6 -3.80279 | gap 1, opp_overlap 2478254, overlap 2478247 AATCCCTAAAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 2572 2478295 - 2478254 - T 100 -15.6 -5.77853 | gap 1, opp_overlap 2478254 2478247 AATCCCTAAAAAAAA CAGCAGTAAGATAATTTTC AATTA GAAAAT-ATCTTACTGCTG TTCTCTATTTATACA TERM 2573 2478441 - 2478457 + T 72 -8 -3.68024 | GGCACATTGTTGTAA GCTGAC TATAT GTCAGC TTCTGTGTTGGGGCC TERM 2574 2478611 - 2478625 + T 71 -5.8 -4.50976 | ATTTACAAATAGCGA CAAATT CTC AATTTG TTTTATCCTATGACC TERM 2575 2479059 - 2479026 - T 100 -14.9 -5.25893 | opp_overlap 2479026 ATACATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT TERM 2576 2479026 - 2479059 + T 100 -12.7 -5.16572 | opp_overlap 2479026 ATACATATCAAAAAA GCTGATTTCTATCAA ATAA TTAATAGAAATCAGC TTTTTTACATTGCCT htrB 2479849 - 2479184 - | hemin ABC transporter ATP-binding protein htrA 2480904 - 2479849 - | hemin ABC transporter membrane protein hssR 2481040 - 2481714 + | hemin DNA-binding response regulator hssS 2481707 - 2483080 + | hemin sensor histidine kinase TERM 2577 2483085 - 2483125 + F 82 -8.6 -3.97283 | gap 1 ATTCACTTTAATCTC TACCTCCTGAAA-AAACAT TTCT GTTTTTATTTCAGGAGGTA TCTTTTATATTGATT USA300HOU_2346 2483243 - 2483686 + | hypothetical protein USA300HOU_2347 2483683 - 2484138 + | hypothetical protein TERM 2578 2484194 - 2484160 - T 90 -8 -5.2189 | opp_overlap 2484155 2484160 TTAACCACTAAAAAA CGGTAATGTCTATC ACATTAA AAAAGACATTACCG TTTCGTTTATTATTT TERM 2579 2484160 - 2484194 + T 77 -7.3 -4.28187 | opp_overlap 2484160, overlap 2484155 TTAACCACTAAAAAA CGGTAATGTCTAT CACATTAAA AAAGACATTACCG TTTCGTTTATTATTT mqo 2485739 - 2484204 - | malate:quinone oxidoreductase TERM 2580 2486030 - 2486005 - R 100 -11.3 -5.96219 | opp_overlap 2485996 2486005 GATCCATAAAAAAAA GATGAGATGTT AGAA AACATCTCACC TTCTGTATATTTATA TERM 2581 2486005 - 2486030 + r 84 -9.1 -3.74615 | opp_overlap 2486005, overlap 2485996 GATCCATAAAAAAAA GATGAGATGTT AGAA AACATCTCACC TTCTGTATATTTATA USA300HOU_2349 2487661 - 2486063 - | LctP family L-lactate permease USA300HOU_2350 2487978 - 2489651 + | hypothetical protein TERM 2582 2489729 - 2489772 + T 79 -5.5 -5.16572 | opp_overlap 2489734, overlap 2489734 ACTTTAAAATACGCA AAAAACGGTAAACCCTA ATTCATATTA TAGAGTTTACCGTTTTA TTTTTTAACTTGCAT TERM 2583 2489767 - 2489734 - T 90 -7.6 -5.19916 | opp_overlap 2489729 2489734 AAAATACGCAAAAAA CGGTAAACCCTA ATTCATATTA TAGAGTTTACCG TTTTATTTTTTAACT TERM 2584 2489734 - 2489767 + T 82 -5.4 -5.43553 | opp_overlap 2489734, overlap 2489729 AAAATACGCAAAAAA CGGTAAACCCTA ATTCATATTA TAGAGTTTACCG TTTTATTTTTTAACT USA300HOU_2351 2490433 - 2489804 - | hypothetical protein USA300HOU_2352 2491262 - 2490747 - | acetyltransferase USA300HOU_2353 2491453 - 2492457 + | zinc (Zn2+) dependent dehydrogenase TERM 2585 2492493 - 2492471 - T 100 -9.9 -4.75372 | opp_overlap 2492471 AGTATTCATGAAAAA GACATCCCG TTATG CGAGATGTC TTTTTTAATTTAGTA TERM 2586 2492471 - 2492493 + T 95 -8.4 -5.40004 | opp_overlap 2492471 AGTATTCATGAAAAA GACATCCCGT TAT GCGAGATGTC TTTTTTAATTTAGTA USA300HOU_2354 2492904 - 2492503 - | acetyltransferase trxB2 2493974 - 2492940 - | thioredoxin-disulfide reductase USA300HOU_2356 2494101 - 2493985 - | hypothetical protein TERM 2587 2494182 - 2494137 - R 86 -7.1 -5.16133 | opp_overlap 2494135 2494137 ATCACAATATAAAAA CACACCTTTCAAAGTAAGA AACAACAA TGTTCCTTTGAAAGATGTG TATATTTTTTAGTTC USA300HOU_2357 2494637 - 2494206 - | hypothetical protein USA300HOU_2358 2494689 - 2494781 + | hypothetical protein TERM 2588 2494825 - 2494784 - T 100 -11.1 -5.05113 | gap 1, opp_overlap 2494781 2494784 GCTATACAAATAAAA TAGCTATACCATGACGCTCG CTA CAAACGTCTTG-TATAGCTA TTATTTCTATTTATT TERM 2589 2494784 - 2494825 + T 74 -6.7 -4.31608 | gap 1, opp_overlap 2494784, overlap 2494781 GCTATACAAATAAAA TAGCTATACCATGACGCTCG CTA CAAACGTCTTG-TATAGCTA TTATTTCTATTTATT USA300HOU_2359 2496121 - 2494844 - | hypothetical protein USA300HOU_2360 2496282 - 2496905 + | transcriptional regulator USA300HOU_2361 2496951 - 2497895 + | MIT family metal ion transporter CorA scrA 2499423 - 2497981 - | PTS family sucrose porter component IIBC TERM 2590 2498776 - 2498760 - G 70 -3.7 -5.00138 | overlap 2498762 TATGCAAACCAAAAA CATCCCA ATA TGGAATA GCCTTACCTGCTTCA USA300HOU_2363 2499606 - 2499989 + | hypothetical protein TERM 2591 2503180 - 2503165 - g 73 -7.6 -3.75817 | opp_overlap 2503165, overlap 2503163 CTTGTACAACAAATA TGGTAG CCCC CTACCA TTAATGCATTTATAT USA300HOU_2364 2501477 - 2503582 + | AraC transcriptional regulator TERM 2592 2504203 - 2504241 + F 100 -10.4 -4.788 | ATGTATTGTTTTTTA GACACACTTTATTCACAT TTA ACGTGATTAGGGTGTGTC TTTTTAAATTAATTT USA300HOU_2365 2504340 - 2504696 + | hypothetical protein TERM 2593 2504792 - 2504749 - T 84 -9 -4.34345 | gap 1, opp_overlap 2504749 TATATACGAGTAAAA GCAGCGGTAAGTTGATTTCCA ATT TGGAA-TCATTTTACTGCTGC TTTTTATATTTGAAA TERM 2594 2504749 - 2504792 + T 100 -13.4 -5.19879 | gap 1, opp_overlap 2504749 TATATACGAGTAAAA GCAGCGGTAAGTTGATTTCCA ATT TGGAA-TCATTTTACTGCTGC TTTTTATATTTGAAA TERM 2595 2505077 - 2505049 - T 100 -17.5 -4.42653 | opp_overlap 2505049 AGCGCATGCATAAAA GCCCCTAACAACC AAA GGTTGTAAGGGGC TTTAAATGTCAGATA TERM 2596 2505049 - 2505077 + T 100 -17.5 -3.71378 | opp_overlap 2505049 AGCGCATGCATAAAA GCCCCTAACAACC AAA GGTTGTAAGGGGC TTTAAATGTCAGATA gltT 2506377 - 2505100 - | DAACS family dicarboxylate/amino acid:sodium or proton symporter TERM 2597 2505493 - 2505512 + g 83 -7.2 -4.75219 | opp_overlap 2505474 2505487, overlap 2505491 AGAAGTAATTTCTTT TGGAGAAC CGAA GTTTTCCA TTTTCTTCATCATTA USA300HOU_2367 2506924 - 2506559 - | hypothetical protein USA300HOU_2368 2507322 - 2507768 + | transcriptional regulator TERM 2598 2508488 - 2508434 - T 75 -9.7 -2.55583 | gap 2, opp_overlap 2508434 2508437 2508441, overlap 2508441 TTAAAATGAATACAC TACTAAAGCCTTAATGTCATGCTACGA ATA TTGC-GCATGATATTAAGGCTTT-GTA TTTAACTAAATGAAT TERM 2599 2508434 - 2508488 + T 95 -11.9 -3.66999 | gap 2, opp_overlap 2508434 2508441, overlap 2508437 2508441 TTAAAATGAATACAC TACTAAAGCCTTAATGTCATGCTACGA ATA TTGC-GCATGATATTAAGGCTTT-GTA TTTAACTAAATGAAT TERM 2600 2508437 - 2508486 + T 100 -12.5 -3.41569 | gap 1, opp_overlap 2508434 2508441, overlap 2508434 2508441 AAATGAATACACTAC TAAAGCCTTAATGTCATGCTACGA ATA TTGC-GCATGATATTAAGGCTTTG TATTTAACTAAATGA TERM 2601 2508482 - 2508441 - T 80 -8.9 -3.8448 | gap 1, opp_overlap 2508437 2508434 2508441, overlap 2508434 GAATACACTACTAAA GCCTTAATGTCATGCTACGA ATA TTGC-GCATGATATTAAGGC TTTGTATTTAACTAA TERM 2602 2508441 - 2508482 + T 100 -11.1 -4.35044 | gap 1, opp_overlap 2508441 2508434, overlap 2508437 2508434 GAATACACTACTAAA GCCTTAATGTCATGCTACGA ATA TTGC-GCATGATATTAAGGC TTTGTATTTAACTAA narK 2509688 - 2508519 - | major facilitator superfamily nitrate:nitrite antiporter TERM 2603 2508706 - 2508716 + g 72 -8.2 -3.51708 | GATACGATACCATTT GCGG ATC CCGC TTCATTTAAGAAGTA TERM 2604 2509794 - 2509773 - g 80 -6.7 -4.67011 | opp_overlap 2509773 AATGTTATTTAAAAA TGCTTTCAT TTAT ATGAAAACA TTCAATATAGACAAA USA300HOU_2370 2509759 - 2509878 + | hypothetical protein USA300HOU_2372 2510951 - 2511691 + | MerR family transcriptional regulator TERM 2605 2511928 - 2511880 - T 74 -8.4 -3.6135 | gap 1, opp_overlap 2511889, overlap 2511882 2511889 AAATATATTTCGAAA CA-TACAAAAGCGCCAGAAGATA ATCA TTTCCTCTCGCGCTTTTATACTG AATTATATTAATTTC TERM 2606 2511925 - 2511882 - T 93 -11.2 -3.37755 | opp_overlap 2511889, overlap 2511880 2511889 ATATATTTCGAAACA TACAAAAGCGCCAGAAGATA ATCA TTTCCTCTCGCGCTTTTATA CTGAATTATATTAAT TERM 2607 2511918 - 2511889 - T 82 -7.1 -4.74013 | opp_overlap 2511889, overlap 2511882 2511880 TCGAAACATACAAAA GCGCCAGAAGATA ATCA TTTCCTCTCGCGC TTTTATACTGAATTA USA300HOU_2373 2512602 - 2511949 - | transcriptional regulator USA300HOU_2374 2513659 - 2512625 - | sensor histidine kinase USA300HOU_2375 2514135 - 2513683 - | hypothetical protein narI 2514832 - 2514155 - | nitrate reductase gamma subunit narJ 2515415 - 2514825 - | nitrate reductase delta subunit narH 2516952 - 2515393 - | nitrate reductase beta subunit TERM 2608 2516847 - 2516869 + g 86 -8.4 -4.70659 | opp_overlap 2516836 ACCACATGTACTCAG CACCTGGACG ATT TGTCCAAGTG TTTTTACATGTCACA narG 2520631 - 2516942 - | nitrate reductase alpha subunit TERM 2609 2517764 - 2517800 + g 74 -9.5 -3.12606 | opp_overlap 2517773 TGATAATTTACCATT CGTAGCAGATGAAATAC TTA GTATTGCATCAGCTACA TTACGTGCTGTATCA TERM 2610 2520916 - 2520876 - R 70 -6.4 -4.1021 | gap 1, opp_overlap 2520876, overlap 2520879 TGGCACAACGACAAA TAAGGCTTCAACACGAA TATATTCT CTCG-GTTGAAACCTTA CTTATTCATTTATTT hemX 2521917 - 2520940 - | uroporphyrin-III C-methyltransferase nirD 2522222 - 2521908 - | nitrite reductase (NAD(P)H) small subunit nirB 2524631 - 2522226 - | nitrite reductase (NAD(P)H) large subunit TERM 2611 2523556 - 2523568 + g 86 -4.9 -5.73339 | overlap 2523561 CCAACTACATTACCG TCTTT TAA AAAGA TTTTTTTATAGTTAT nirR 2525428 - 2524697 - | transcriptional regulator NirR TERM 2612 2525520 - 2525505 - R 84 -9 -4.33151 | CATTATAATGTAAAA TCAGGG AATT CCCTGA TGCCTGTAGTCATGC TERM 2613 2525635 - 2525577 - R 80 -2.1 -5.72207 | gap 2, opp_overlap 2525578, overlap 2525578 GTTAAATCAAAAAAA GCGACCGATATATGAATCCCTACTCAA CATTTAT TTGAGCAAGCATTAATATATCGGTC-- GCTTGTAGTGTATAT TERM 2614 2525578 - 2525636 + r 89 -12 -2.70661 | opp_overlap 2525577 2525578, overlap 2525635 TTAAATCAAAAAAAG CGACCGATATATGAATCCCTACTCAA CATTTAT TTGAGCAAGCATTAATATATCGGTCG CTTGTAGTGTATATT TERM 2615 2525636 - 2525578 - R 100 -16.4 -4.01698 | opp_overlap 2525578 2525635, overlap 2525577 TTAAATCAAAAAAAG CGACCGATATATGAATCCCTACTCAA CATTTAT TTGAGCAAGCATTAATATATCGGTCG CTTGTAGTGTATATT USA300HOU_2384 2526194 - 2525658 - | GNAT family acetyltransferase TERM 2616 2525891 - 2525903 + g 73 -7.7 -3.79043 | opp_overlap 2525890 CATAAGTAAGTAATT GGCTA CCA TAGCC TTTCCCTTCATACTC TERM 2617 2526379 - 2526360 - R 81 -6.5 -5.15969 | opp_overlap 2526360 TCTCAACGTAAAAAA CCATTCA AATTCA TGAATGG TTTGGAAGAATGATT USA300HOU_2385 2527134 - 2526427 - | FNT family formate-nitrite transporter TERM 2618 2526763 - 2526749 - G 73 -7.2 -3.90048 | opp_overlap 2526756 2526757, overlap 2526747 2526757 CCTTTTGTAAAAATA TTCAAC CAT GTTGAA TCAACAGTCTTTTTC TERM 2619 2528373 - 2528336 - R 100 -10.7 -5.68438 | CTACGAAATAAAAAA CACACTCTATTCAGCTA TTAA CAGTTGAGTAGAGTGTG CAAACCTGTTGAATT USA300HOU_2386 2529937 - 2528387 - | ABC transporter ATP-binding protein TERM 2620 2529698 - 2529686 - G 71 -6.3 -4.12532 | CCCTGTATACATAAA CAAGT CTG ACTTG CTTGCACTTAATATA TERM 2621 2530177 - 2530144 - R 95 -6.2 -5.94214 | AATATAAGAAAAAAA GACAATCTCTATCA TATTGC TAATAGAAATTGCC TTTTCATATTGTCCT USA300HOU_2387 2530498 - 2530232 - | hypothetical protein USA300HOU_2388 2530749 - 2530498 - | hypothetical protein TERM 2622 2530968 - 2530935 - R 78 -6.2 -4.84527 | TTCATACATTAAAAA GACAATCTCTATCA TATCGC TAATAGAAATTGCC TTTTCGTATTGTCCT USA300HOU_2389 2531015 - 2530914 - | hypothetical protein USA300HOU_2390 2531621 - 2531022 - | lipoprotein USA300HOU_2391 2532008 - 2531640 - | lipoprotein TERM 2623 2531876 - 2531888 + g 71 -3.4 -5.10154 | overlap 2531863 CGTTGCCTTTTTTGG CAAG TTGTT CTTG TTTTTGATTTTGAAT USA300HOU_2392 2532254 - 2533504 + | FemAB family peptidoglycan biosynthesis protein USA300HOU_2393 2534332 - 2533601 - | ABC transporter ATP-binding protein USA300HOU_2394 2535057 - 2534329 - | ABC transporter ATP-binding protein USA300HOU_2395 2535808 - 2535029 - | amino acid ABC transporter ATP-binding protein USA300HOU_2396 2537368 - 2535929 - | major facilitator superfamily multidrug :cation symporter TERM 2624 2537228 - 2537217 - G 86 -5.8 -5.4833 | TTAGTCAATAAAAAA GCTG TTGT CAGC CATTGAACTTGTGTA USA300HOU_2397 2537542 - 2537646 + | hypothetical protein TERM 2625 2537756 - 2537794 + T 100 -11.9 -5.64274 | opp_overlap 2537756 ACTTCACATATTTAA GAGCTGCATATACAC TCACTCCTT GTGTACATGCAGCTC TTTTTTTATAAGTAG TERM 2626 2537794 - 2537756 - T 100 -14.1 -3.16177 | opp_overlap 2537756 ACTTCACATATTTAA GAGCTGCATATACAC TCACTCCTT GTGTACATGCAGCTC TTTTTTTATAAGTAG gpmA2 2538486 - 2537800 - | phosphoglycerate mutase TERM 2627 2538337 - 2538319 - G 73 -8.2 -3.62775 | overlap 2538333 AGCACGTGTTAATAA CGATGTAA AAG CTACATCG ATGGCAATGTTATTT TERM 2628 2538755 - 2538732 - R 100 -9.8 -5.055 | opp_overlap 2538730 CTAAGGTTTAAAAAA TATTTTTAGG TAAA CCTAAAAATA GATGTAATAAAAACG TERM 2629 2538802 - 2538769 - R 86 -7.5 -5.12068 | TAGATGTAATAAAAA CGCCTCCTCAGATAT TTAT ATATCTATGAAGACG TTTAAATACATTATA USA300HOU_2399 2539679 - 2538813 - | CDF family cation diffusion facilitator TERM 2630 2539871 - 2539885 + r 84 -8.6 -4.2074 | CTCCCTGTTTGTTAA CTTTCG CCT CGAAAG TTTCTATGTTGGGAC TERM 2631 2539907 - 2539930 + r 71 -7.6 -3.47652 | gap 1, overlap 2539905 TGTTGGGACCCTATG CATTAG-TAGC GAA GCTATCTAATG TGTTCCTTTATTTTC TERM 2632 2539974 - 2540001 + r 80 -10 -3.23296 | gap 1, overlap 2539975 AGCTAGAAAGGCTTA TGCAGTT-GACGT TTT ACGTCCAACTGCG TTCCTCCGTCTTCTT TERM 2633 2539975 - 2540000 + r 85 -11.3 -2.53255 | gap 1, overlap 2539974 GCTAGAAAGGCTTAT GCAGTT-GACGT TTT ACGTCCAACTGC GTTCCTCCGTCTTCT TERM 2634 2540062 - 2540076 + r 84 -8.6 -4.2074 | CTCCCTGTTTGTTAA CTTTCG CCT CGAAAG TTTCTATGTTAGAAC USA300HOU_2400 2540336 - 2540232 - | hypothetical protein USA300HOU_2401 2540431 - 2541741 + | immunoglobulin G-binding protein SBI TERM 2635 2541844 - 2541813 - f 100 -11.7 -4.73388 | opp_overlap 2541813 AACCGTGATTAAAAA GAACCGTTGATTC TCAATC GAATCTACGGTTC TTTTTTCATTTTCCA TERM 2636 2541813 - 2541844 + F 100 -11.7 -5.46698 | opp_overlap 2541813 AACCGTGATTAAAAA GAACCGTTGATTC TCAATC GAATCTACGGTTC TTTTTTCATTTTCCA hlgA 2542241 - 2543206 + | gamma-hemolysin component A TERM 2637 2543257 - 2543229 - f 75 -4.6 -5.07053 | opp_overlap 2543229 AATCATCTTAAAAAA TCCTGGGACA CTTCATACT TGTCTCAGGA TTTTTTAACAAATTG TERM 2638 2543229 - 2543257 + F 83 -6.8 -5.03145 | opp_overlap 2543229 AATCATCTTAAAAAA TCCTGGGACA CTTCATACT TGTCTCAGGA TTTTTTAACAAATTG USA300HOU_2403 2543270 - 2543395 + | hypothetical protein TERM 2639 2543524 - 2543510 - f 72 -4.2 -5.12785 | TAATTAAAAAAGAAA GCAAGA CAT TCGTGC AATCGGTTACCTTAA TERM 2640 2544008 - 2543986 - g 74 -2 -5.42265 | opp_overlap 2543990, overlap 2543988 2543991 GTAAAGGATAAAAAA TATAACAAAG ATG CTTTGATATT AAAGATGCAAGGATT TERM 2641 2544003 - 2543991 - g 71 -6.3 -4.23386 | opp_overlap 2543990, overlap 2543988 2543986 GGATAAAAAATATAA CAAAG ATG CTTTG ATATTAAAGATGCAA hlgC 2543773 - 2544720 + | gamma hemolysin component C hlgB 2544722 - 2545699 + | gamma hemolysin component B TERM 2642 2545704 - 2545745 + T 100 -12.5 -3.27523 | gap 1, opp_overlap 2545709, overlap 2545709 ACAATAAATAGCTAG TAAAACACGGTCGCCAACAG TAA TTGT-GACGACCGTGTTTTG ATTTATTATCTTAGT TERM 2643 2545740 - 2545709 - T 100 -11.7 -4.31412 | gap 1, opp_overlap 2545704 2545709 AAATAGCTAGTAAAA CACGGTCGCCAACA GTAAT TGT-GACGACCGTG TTTTGATTTATTATC TERM 2644 2545709 - 2545740 + T 100 -10.2 -4.70353 | gap 1, opp_overlap 2545709, overlap 2545704 AAATAGCTAGTAAAA CACGGTCGCCAACAG TAA TTGT-GACGACCGTG TTTTGATTTATTATC USA300HOU_2406 2546218 - 2545751 - | hypothetical protein bioW 2546906 - 2546229 - | 6-carboxyhexanoate--CoA ligase bioF 2548047 - 2546932 - | 8-amino-7-oxononanoate synthase bioB 2549032 - 2548025 - | biotin synthase bioA 2550392 - 2549034 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase bioD 2551056 - 2550370 - | dethiobiotin synthase TERM 2645 2551443 - 2551408 - R 100 -15.7 -2.57239 | opp_overlap 2551412, overlap 2551412 AACATCTAAATACAC CAAATCCCCTCACTA TTGCCC TAGTGAGGGGATTTA TTTTGCTGTTGATTA TERM 2646 2551439 - 2551412 - R 100 -14.3 -3.97308 | opp_overlap 2551412, overlap 2551408 TCTAAATACACCAAA TCCCCTCACTA TTGCCC TAGTGAGGGGA TTTATTTTGCTGTTG TERM 2647 2551412 - 2551439 + r 100 -14.3 -4.77698 | opp_overlap 2551408 2551412 TCTAAATACACCAAA TCCCCTCACTA TTGCCC TAGTGAGGGGA TTTATTTTGCTGTTG USA300HOU_2412 2553241 - 2551508 - | ABC transporter ATP-binding protein USA300HOU_2413 2555029 - 2553266 - | ABC transporter ATP-binding protein TERM 2648 2553307 - 2553321 + g 73 -4.2 -4.84492 | AATCTTTTGTATGCA TGTGCG TAT CCCACA TTTTCTTATAATTAC TERM 2649 2555345 - 2555368 + r 74 -6.8 -4.2123 | opp_overlap 2555351, overlap 2555347 2555351 AACTTGCATTGTCTC TAGAAATTGG GAAT CCAATTTCTC TTTGTTGGGTCCCTG TERM 2650 2555347 - 2555366 + r 81 -9.4 -3.70307 | opp_overlap 2555351, overlap 2555345 2555351 CTTGCATTGTCTCTA GAAATTGG GAAT CCAATTTC TCTTTGTTGGGTCCC USA300HOU_2414 2555630 - 2555523 - | hypothetical protein TERM 2651 2555644 - 2555609 - G 100 -16.4 -2.57239 | opp_overlap 2555613, overlap 2555613 AACATCTAAATACAC CAAATCCCCTCACTAC TGCC ATAGTGAGGGGATTTA TTTAGGTGTTGGTTA TERM 2652 2555640 - 2555613 - G 100 -15 -3.97308 | opp_overlap 2555613, overlap 2555609 TCTAAATACACCAAA TCCCCTCACTAC TGCC ATAGTGAGGGGA TTTATTTAGGTGTTG TERM 2653 2555613 - 2555640 + g 100 -14.3 -4.49906 | opp_overlap 2555613 2555609 TCTAAATACACCAAA TCCCCTCACTA CTGCCA TAGTGAGGGGA TTTATTTAGGTGTTG USA300HOU_2415 2555764 - 2555657 - | hypothetical protein USA300HOU_2416 2556284 - 2555898 - | hypothetical protein USA300HOU_2417 2556440 - 2556381 - | hypothetical protein glxK 2556552 - 2557694 + | glycerate kinase TERM 2654 2557947 - 2557936 - g 70 -3.6 -4.89477 | TCTTGAAGAAGAAAA CGAG AAAT CCCG CCGTTCAAAAAAATG USA300HOU_2419 2557754 - 2558413 + | hypothetical protein TERM 2655 2558446 - 2558504 + F 95 -8.3 -5.37043 | opp_overlap 2558446 ATGATAAACATTAAT TCCCTATACTTTATCTGTATCACTACG TTATT CGTGATGATGCATTAAGAGTATAGGGA TTTTTTATATAAACT bcr 2558595 - 2559806 + | major facilitator superfamily bicyclomycin:cation symporter TERM 2656 2559861 - 2559820 - T 74 -8.1 -3.68726 | opp_overlap 2559823 2559826, overlap 2559823 2559826 AACACTTCAACATAA TTAGAACCCTAGCAAAGAT ATCT ATCTTTGTCAGGGTTCTTC TTTATGAATTATGAG TERM 2657 2559858 - 2559823 - T 100 -14.2 -2.94561 | opp_overlap 2559823 2559826, overlap 2559820 2559826 ACTTCAACATAATTA GAACCCTAGCAAAGAT ATCT ATCTTTGTCAGGGTTC TTCTTTATGAATTAT TERM 2658 2559823 - 2559858 + T 100 -14.2 -4.11906 | opp_overlap 2559823 2559820 2559826, overlap 2559826 ACTTCAACATAATTA GAACCCTAGCAAAGAT ATCT ATCTTTGTCAGGGTTC TTCTTTATGAATTAT TERM 2659 2559855 - 2559826 - T 83 -10.1 -3.61209 | opp_overlap 2559823 2559826, overlap 2559823 2559820 TCAACATAATTAGAA CCCTAGCAAAGAT ATCT ATCTTTGTCAGGG TTCTTCTTTATGAAT TERM 2660 2559826 - 2559855 + T 91 -10.1 -4.16305 | opp_overlap 2559826 2559823 2559820, overlap 2559823 TCAACATAATTAGAA CCCTAGCAAAGAT ATCT ATCTTTGTCAGGG TTCTTCTTTATGAAT USA300HOU_2421 2560402 - 2559929 - | hypothetical protein USA300HOU_2422 2560515 - 2561171 + | hypothetical protein TERM 2661 2561193 - 2561163 - T 100 -9.1 -4.90302 | opp_overlap 2561167 CAGCAACAAAATAAA CACACGTAAGTAA ACACA TTACTCGCGTGTG TAAAACATAAAATGC TERM 2662 2561199 - 2561238 + T 88 -8.8 -4.42743 | gap 1, opp_overlap 2561201 2561206, overlap 2561200 2561201 2561206 CTCGCGTGTGTAAAA CATAAAATGCGCAAA-CTG GGT CAGGTTTGCGCATTTTAAA TTTCTATTATTTGTA TERM 2663 2561200 - 2561237 + T 100 -12.3 -3.24019 | gap 1, opp_overlap 2561201 2561206, overlap 2561199 2561201 2561206 TCGCGTGTGTAAAAC ATAAAATGCGCAAA-CTG GGT CAGGTTTGCGCATTTTAA ATTTCTATTATTTGT TERM 2664 2561236 - 2561201 - T 100 -15.8 -3.63744 | gap 1, opp_overlap 2561200 2561199 2561201 2561206, overlap 2561206 CGCGTGTGTAAAACA TAAAATGCGCAAA-CTG GGT CAGGTTTGCGCATTTTA AATTTCTATTATTTG TERM 2665 2561201 - 2561236 + T 100 -15.8 -2.52785 | gap 1, opp_overlap 2561201 2561206, overlap 2561200 2561199 2561206 CGCGTGTGTAAAACA TAAAATGCGCAAA-CTG GGT CAGGTTTGCGCATTTTA AATTTCTATTATTTG TERM 2666 2561206 - 2561231 + T 100 -11.3 -4.42081 | gap 1, opp_overlap 2561206 2561201, overlap 2561201 2561200 2561199 GTGTAAAACATAAAA TGCGCAAA-CTG GGT CAGGTTTGCGCA TTTTAAATTTCTATT TERM 2667 2561231 - 2561206 - T 100 -11.3 -4.89567 | gap 1, opp_overlap 2561201 2561200 2561199 2561206, overlap 2561201 GTGTAAAACATAAAA TGCGCAAA-CTG GGT CAGGTTTGCGCA TTTTAAATTTCTATT USA300HOU_2423 2562040 - 2561234 - | hypothetical protein TERM 2668 2562897 - 2562913 + G 71 -6.6 -4.22748 | overlap 2562908 TCAGTCACGGTGGCA TGTTCC CTGGT GGAACA TTTGGTTTCTTAATG TERM 2669 2563416 - 2563426 + G 79 -5.4 -5.04356 | ACGTTACAACGTTAT CAAC TGT GTTG TTTTTAGTTGTTTGG USA300HOU_2424 2562326 - 2563735 + | APC family amino acid-polyamine-organocation transporter TERM 2670 2563749 - 2563777 + F 100 -13.3 -5.42259 | AATTTAAACATCTCG CTCTAGTATCAGT TCA ACCGATACTAGAG TTTTTTTGAAAATAA TERM 2671 2564957 - 2564967 + G 74 -6.8 -4.31433 | CACCACCTTCTCGAG TGCG TTA CGCA TTTATTATGACCATG TERM 2672 2565269 - 2565255 - g 82 -4.3 -5.41787 | TAAAAAAGACAAAAA CGATA CAAAT TATCG CCCAGTATTAAACCA TERM 2673 2565624 - 2565640 + G 81 -8.1 -4.21933 | TCAAAAAATTATGCG TATTGTG AAT CACAATA TTATTTTACGCTTAA USA300HOU_2425 2563873 - 2565951 + | CPA1 family monovalent cation:proton (H+) antiporter-1 TERM 2674 2566020 - 2565963 - T 100 -12.3 -3.72909 | opp_overlap 2565969, overlap 2565966 2565968 2565969 TTAAGCAAGACATAA CAATACCCCCGTACATATGAGACAA AGTCATTA TCATCTCATATGTACGGGGTTTTTA TATTCAACATCAAAA TERM 2675 2566017 - 2565966 - T 100 -11.8 -3.97645 | opp_overlap 2565969, overlap 2565963 2565968 2565969 AGCAAGACATAACAA TACCCCCGTACATATGAGACAA AGTCATTA TCATCTCATATGTACGGGGTTT TTATATTCAACATCA TERM 2676 2566015 - 2565968 - T 100 -14.4 -3.56668 | opp_overlap 2565969, overlap 2565966 2565963 2565969 CAAGACATAACAATA CCCCCGTACATATGAGACAA AGTCATTA TCATCTCATATGTACGGGGT TTTTATATTCAACAT TERM 2677 2565969 - 2566014 + T 100 -13.5 -5.0916 | opp_overlap 2565968 2565966 2565963 2565969 AAGACATAACAATAC CCCCGTACATATGAGACAA AGTCATTA TCATCTCATATGTACGGGG TTTTTATATTCAACA TERM 2678 2566014 - 2565969 - T 100 -17.9 -2.72916 | opp_overlap 2565969, overlap 2565968 2565966 2565963 AAGACATAACAATAC CCCCGTACATATGAGACAA AGTCATTA TCATCTCATATGTACGGGG TTTTTATATTCAACA TERM 2679 2566076 - 2566038 - T 100 -14.9 -5.27779 | opp_overlap 2566038 TTCAACATCAAAAAA TCAGATTGATGAAAAGT AAATA ACCTTTCATCAATCCGA TTTGATTATAGAATC TERM 2680 2566038 - 2566076 + T 93 -10.5 -4.00124 | opp_overlap 2566038 TTCAACATCAAAAAA TCAGATTGATGAAAAGT AAATA ACCTTTCATCAATCCGA TTTGATTATAGAATC USA300HOU_2426 2566131 - 2566030 - | hypothetical protein USA300HOU_2427 2567920 - 2566091 - | APC family amino acid-polyamine-organocation transporter USA300HOU_2428 2568118 - 2568014 - | hypothetical protein fmtA 2568152 - 2569648 + | FmtA protein TERM 2681 2569656 - 2569708 + T 81 -7.2 -4.65458 | gap 2, opp_overlap 2569656 AGACATAATAAAAAA GACTTGTTCGAGCCGTGCGTTTGATA ATA TATCAT-C-CACGATTCGACCAAGTC TTTATTCTTTGTATA TERM 2682 2569708 - 2569656 - T 90 -7.2 -5.62045 | gap 2, opp_overlap 2569656 AGACATAATAAAAAA GACTTGTTCGAGCCGTGCGTTTGATA ATA TATCAT-C-CACGATTCGACCAAGTC TTTATTCTTTGTATA USA300HOU_2430 2570591 - 2569740 - | epimerase/dehydratase TERM 2683 2570827 - 2570787 - g 79 -5.5 -5.20534 | ATCAATCAAGAAAAA CAGCACCAAGATCATTTCA ATT TGAAAGTACCTTACTGCTG TTCTTTATTTATTAC USA300HOU_2431 2570747 - 2570944 + | hypothetical protein panE1 2571848 - 2570913 - | 2-dehydropantoate 2-reductase USA300HOU_2433 2573474 - 2572074 - | major facilitator transporter TERM 2684 2573533 - 2573511 - R 70 -3.6 -5.05606 | TTTAAGAAAAACAAA TTTTTAATAT GAT ATATTAAGAA ACAATATCATAAATT TERM 2685 2573678 - 2573713 + r 71 -7.7 -3.45403 | opp_overlap 2573678, overlap 2573676 2573705 CACAACCTATAAAAA GGCTACTCAAAGA TTATTTGAGC TCCTTGAGTAGCC TCATTTTTTATAAAT TERM 2686 2573713 - 2573678 - R 100 -9.9 -4.93318 | opp_overlap 2573676 2573678 2573705 CACAACCTATAAAAA GGCTACTCAAAGA TTATTTGAGC TCCTTGAGTAGCC TCATTTTTTATAAAT TERM 2687 2573705 - 2573716 + r 75 -4.4 -5.28778 | opp_overlap 2573678, overlap 2573678 2573676 ATTATTTGAGCTCCT TGAG TAGC CTCA TTTTTTATAAATCAT opuCD 2574463 - 2573768 - | glycine betaine/L-proline ABC transporter membrane protein opuBC 2575404 - 2574463 - | glycine betaine/L-proline ABC transporter binding protein USA300HOU_2436 2576056 - 2575421 - | glycine betaine/choline ABC transporter membrane protein USA300HOU_2437 2577279 - 2576053 - | glycine betaine/choline ABC transporter ATP-binding protein USA300HOU_2438 2577725 - 2577606 - | hypothetical protein TERM 2688 2577897 - 2577872 - R 100 -10.5 -5.51402 | opp_overlap 2577872 ACACACCTAAAAAAA CAACCAACAGC ATGA GCCATTGGTTG TTTCGTGTCATCTTG USA300HOU_2439 2578548 - 2577949 - | hypothetical protein USA300HOU_2440 2578728 - 2580365 + | APC family amino acid-polyamine-organocation transporter TERM 2689 2580414 - 2580442 + F 81 -2.5 -5.79595 | gap 1, opp_overlap 2580414 ACACACACACATTAA CCAACCATTGAT TTCAAC ATCT-TGGTTGG TTTTTTATTTTGAAA TERM 2690 2580566 - 2580578 + F 90 -7.7 -5.1925 | opp_overlap 2580565 2580557 ACTGAACGAAAATGC GCTTG TAA CAAGC TTTTTTCGATTCTAG TERM 2691 2580702 - 2580722 + F 81 -9.1 -3.61527 | overlap 2580704 AATTAGTATTTCTTA TGCATGAGT TTT ACTCATGTA TTCATATTTTTAAGT TERM 2692 2580704 - 2580720 + F 78 -9.5 -3.37164 | overlap 2580702 TTAGTATTTCTTATG CATGAGT TTT ACTCATG TATTCATATTTTTAA TERM 2693 2581366 - 2581350 - g 74 -5.9 -4.48072 | opp_overlap 2581350 ACATTTAGTACAAAA TAACGAC ATT ATCGTTA TTACATGCAATTATC TERM 2694 2582134 - 2582154 + G 81 -7.7 -4.4078 | CACTATCGCAGTGCT TACCATATT CTA GATATGGTA TTTTGGTTCGGAAAC pnbA 2580973 - 2582325 + | carboxylesterase TERM 2695 2582372 - 2582345 - T 81 -6.3 -5.09225 | opp_overlap 2582345 ATCGCATCTAAAAAA GCACACCTG AATTTGATAG CAGGCGTGC TTTTCATATGAGAAT USA300HOU_2442 2583565 - 2582387 - | major facilitator superfamily chloramphenicol:cation symporter TERM 2696 2583653 - 2583641 - R 81 -6.3 -5.1675 | opp_overlap 2583641 2583640 CGATTTATTAAAAAA TGTGT GCA ACACA ATTTTATATATAACC TERM 2697 2583866 - 2583815 - R 100 -9.7 -5.11937 | gap 1, opp_overlap 2583815 2583814 AATAACTCCAAAAAA GCACGCACGCTTTATATGTCAG AACAGATAA CTGAC-TACAAAGTATGCGTGC CTTTATGAATATTTT USA300HOU_2443 2584746 - 2583970 - | ABC transporter ATP-binding protein TERM 2698 2584140 - 2584127 - G 73 -8.1 -3.54459 | TTAATCGCTTGTAAA GGTGG TACG CCACC AATAATTAAGCCTGT USA300HOU_2444 2585401 - 2584739 - | ABC transporter ATP-binding protein pepA 2586725 - 2585649 - | M42 family glutamyl aminopeptidase TERM 2699 2587020 - 2586978 - R 79 -5.7 -5.1417 | gap 1 TTATAAAATTAAAAA GTGTAGAGATAACAACG-CA TTAA CGTCGCTATTTTCCCTACAC TTAAATACTAGTTTC USA300HOU_2446 2587346 - 2587080 - | hypothetical protein USA300HOU_2447 2587603 - 2587346 - | hypothetical protein USA300HOU_2448 2587903 - 2587709 - | hypothetical protein USA300HOU_2449 2587962 - 2588417 + | hypothetical protein TERM 2700 2588483 - 2588433 - T 100 -9.3 -4.78149 | gap 2, opp_overlap 2588434 2588482, overlap 2588434 TTTATAACTTAAAAA TGCCCTCAG-ATAAG-ACTAAGGTT ACA AACCTTAATTCATATTCTGAGGGCT TTAATATTTGAAGTT TERM 2701 2588434 - 2588482 + T 93 -10.6 -4.00934 | gap 2, opp_overlap 2588433 2588434 TTATAACTTAAAAAT GCCCTCAG-ATAAG-ACTAAGGTT ACA AACCTTAATTCATATTCTGAGGGC TTTAATATTTGAAGT TERM 2702 2588482 - 2588434 - T 100 -12.8 -3.46167 | gap 2, opp_overlap 2588434, overlap 2588433 TTATAACTTAAAAAT GCCCTCAG-ATAAG-ACTAAGGTT ACA AACCTTAATTCATATTCTGAGGGC TTTAATATTTGAAGT gltB2 2590162 - 2588585 - | glutamate synthase (NADPH) TERM 2703 2590238 - 2590264 + G 76 -4.6 -5.10154 | ACAATGGAAGCGCTT CATTTTATAAAA CAA TTTTATGATATG TTTTTCATTTTAAAT USA300HOU_2451 2590199 - 2590291 + | hypothetical protein USA300HOU_2452 2590357 - 2591106 + | hypothetical protein TERM 2704 2591189 - 2591148 - T 90 -8.2 -4.86133 | opp_overlap 2591148 2591149, overlap 2591149 CATACACATCAAAAA GCACACTTAAAAGTCAGT ATCAAA ACTCACTTTTAAGCGTGA TTTATTTAGATATAC TERM 2705 2591148 - 2591189 + T 71 -6 -4.48299 | opp_overlap 2591148 2591149, overlap 2591149 CATACACATCAAAAA GCACACTTAAAAGTCAGT ATCAAA ACTCACTTTTAAGCGTGA TTTATTTAGATATAC TERM 2706 2591149 - 2591188 + T 78 -9.5 -3.28256 | opp_overlap 2591148 2591149, overlap 2591148 ATACACATCAAAAAG CACACTTAAAAGTCAGT ATCAAA ACTCACTTTTAAGCGTG ATTTATTTAGATATA TERM 2707 2591188 - 2591149 - T 95 -11.7 -3.50595 | opp_overlap 2591149 2591148, overlap 2591148 ATACACATCAAAAAG CACACTTAAAAGTCAGT ATCAAA ACTCACTTTTAAGCGTG ATTTATTTAGATATA USA300HOU_2453 2592523 - 2591330 - | major facilitator transporter TERM 2708 2591799 - 2591780 - G 76 -6.4 -4.59773 | CTGTATTGTCAAAAA GATTCCCG CATT CGCGAATC CTAAACTCACTGTGT USA300HOU_2454 2593284 - 2592535 - | ABC transporter ATP-binding protein USA300HOU_2455 2594092 - 2593277 - | oligopeptide ABC transporter ATP-binding protein USA300HOU_2456 2594958 - 2594089 - | oligopeptide ABC transporter membrane protein USA300HOU_2457 2595890 - 2594955 - | oligopeptide ABC transporter membrane protein TERM 2709 2595505 - 2595468 - G 85 -9.3 -3.93583 | gap 1, opp_overlap 2595468 2595467, overlap 2595472 TAATGCAGTTAGAAA GAAAGC-CACTGAACGTA TCG CACGATCAGTGAACTTTC CTCTTTTTAATGCAC USA300HOU_2458 2597501 - 2595903 - | oligopeptide ABC transporter substrate-binding protein TERM 2710 2596031 - 2596047 + g 70 -3.7 -4.84761 | opp_overlap 2596034, overlap 2596034 AGATACCTTCATCAT CAATTTG TTT CAAAATG TTTTTATAAGCGTCT USA300HOU_2459 2598945 - 2597644 - | hypothetical protein TERM 2711 2597885 - 2597902 + g 73 -4.2 -4.87786 | GGCATTCTTGGAATT TGAACA ACATCC TGTTCA TTTTTATAGACTTGC TERM 2712 2598808 - 2598822 + g 80 -6.4 -4.82678 | TTTCGCTTTTTTATA CGCTTG ATA TAAGCG TTTTGATTTTTCTGA USA300HOU_2460 2599756 - 2598938 - | hypothetical protein USA300HOU_2461 2600588 - 2599767 - | hypothetical protein TERM 2713 2600615 - 2600645 + r 95 -12.1 -3.39749 | gap 1 TTAGATGTATTTTTA GAGCCTCT-GTAAT TTTA ATTACTAGAGGCTC TTATGCAGTTGTTGC TERM 2714 2600649 - 2600676 + r 74 -8.6 -3.26649 | gap 1, overlap 2600651 TACTAGAGGCTCTTA TGCAGTTG-TTGC GAA GCAAACAACTGTA TTCCTCTAAACCTGT TERM 2715 2600651 - 2600674 + r 73 -9 -3.1978 | gap 1, overlap 2600649 CTAGAGGCTCTTATG CAGTTG-TTGC GAA GCAAACAACTG TATTCCTCTAAACCT TERM 2716 2600773 - 2600800 + r 74 -8.6 -3.26649 | gap 1, overlap 2600775 AAACCATGGCTCTTA TGCAGTTG-TTGC GAA GCAAGCAACTGTA TTCCTCTAAAACTGT TERM 2717 2600775 - 2600798 + r 73 -9 -3.1978 | gap 1, overlap 2600773 ACCATGGCTCTTATG CAGTTG-TTGC GAA GCAAGCAACTG TATTCCTCTAAAACT TERM 2718 2601046 - 2601070 + r 77 -8.7 -3.6018 | opp_overlap 2601047 2601051, overlap 2601047 2601051 AAAAAGTTGCAGAAA ACAAATCGTAA CTA TTACGATTTGA TTATATACTATATTA TERM 2719 2601069 - 2601047 - R 100 -12.2 -4.41844 | opp_overlap 2601046 2601047 2601051, overlap 2601051 AAAAGTTGCAGAAAA CAAATCGTAA CTA TTACGATTTG ATTATATACTATATT TERM 2720 2601047 - 2601069 + r 100 -12.2 -2.75385 | opp_overlap 2601047 2601051, overlap 2601046 2601051 AAAAGTTGCAGAAAA CAAATCGTAA CTA TTACGATTTG ATTATATACTATATT TERM 2721 2601065 - 2601051 - R 82 -7.2 -4.77173 | opp_overlap 2601047 2601046 2601051, overlap 2601047 GTTGCAGAAAACAAA TCGTAA CTA TTACGA TTTGATTATATACTA TERM 2722 2601051 - 2601065 + r 75 -7.2 -4.05245 | opp_overlap 2601051 2601047, overlap 2601047 2601046 GTTGCAGAAAACAAA TCGTAA CTA TTACGA TTTGATTATATACTA TERM 2723 2601409 - 2601432 + r 83 -9.7 -3.64236 | opp_overlap 2601409 ATACGCACCAAAAAA GCTTTGTAC AATTTC GTACAAAGC TTTAAAAATTTAAAT TERM 2724 2601432 - 2601409 - R 100 -10.4 -5.17353 | opp_overlap 2601409 ATACGCACCAAAAAA GCTTTGTACA ATTT CGTACAAAGC TTTAAAAATTTAAAT USA300HOU_2462 2601820 - 2601455 - | hypothetical protein TERM 2725 2601522 - 2601546 + g 76 -2.9 -5.42198 | opp_overlap 2601525 2601528 TGTAATTCAGGGAAG TAATTATTAGC AAA GCCAATTATTA TTTTATTTTTTACAA USA300HOU_2464 2603134 - 2604672 + | p-aminobenzoyl-glutamate transporter TERM 2726 2604695 - 2604734 + T 74 -6.5 -4.3767 | opp_overlap 2604698, overlap 2604696 2604698 CAAAGGGATAAATTA AAATGCCACTATACAAG ATTTGA CCTGTATAGTGGCATGA TTTGTTATGATATAG TERM 2727 2604696 - 2604733 + T 80 -10 -3.21879 | opp_overlap 2604698, overlap 2604695 2604698 AAAGGGATAAATTAA AATGCCACTATACAAG ATTTGA CCTGTATAGTGGCATG ATTTGTTATGATATA TERM 2728 2604698 - 2604731 + T 100 -12.6 -3.16079 | opp_overlap 2604698, overlap 2604696 2604695 AGGGATAAATTAAAA TGCCACTATACAAG ATTTGA CCTGTATAGTGGCA TGATTTGTTATGATA TERM 2729 2604731 - 2604698 - T 100 -14.8 -4.62475 | opp_overlap 2604698 2604696 2604695 AGGGATAAATTAAAA TGCCACTATACAAG ATTTGA CCTGTATAGTGGCA TGATTTGTTATGATA USA300HOU_2465 2605206 - 2604784 - | hypothetical protein TERM 2730 2605673 - 2605647 - R 79 -5.9 -5.02715 | opp_overlap 2605651, overlap 2605651 AGATTAAATCAAAAA TAAAGAAGACC CTAGT GGCCTTCTTTT TTATCTAATTCTTCT TERM 2731 2605651 - 2605669 + r 81 -4.5 -5.42131 | opp_overlap 2605647 2605651 TAAATCAAAAATAAA GAAGACC CTAGT GGCCTTC TTTTTTATCTAATTC TERM 2732 2605669 - 2605651 - R 82 -6.7 -5.00388 | opp_overlap 2605651, overlap 2605647 TAAATCAAAAATAAA GAAGACC CTAGT GGCCTTC TTTTTTATCTAATTC USA300HOU_2466 2606077 - 2605658 - | hypothetical protein USA300HOU_2467 2606514 - 2606095 - | hypothetical protein USA300HOU_2468 2606468 - 2606689 + | hypothetical protein TERM 2733 2606768 - 2606790 + Tr 74 -6.3 -4.43351 | gap 1, opp_overlap 2606768, overlap 2606765 AAAACAAAATTAAAA CGGCCGCATA GTTT TA-GCGGTCG TTCTTTTTAGACTCT USA300HOU_2469 2607203 - 2606781 - | hypothetical protein USA300HOU_2470 2608149 - 2607454 - | dehydrogenase TERM 2734 2607534 - 2607546 + g 71 -3.4 -5.08169 | CTGCTTCTGCAATAT CTTG TGGTT CAAG TTTTTTACGATCTGT TERM 2735 2608834 - 2608811 - R 89 -10.3 -3.82433 | opp_overlap 2608811, overlap 2608800 ATAAGTATGACTAAA GCCACATCC AATATA GGACGTGGC TTTTAGTATCGTTCC TERM 2736 2608811 - 2608834 + r 85 -8.1 -4.39287 | opp_overlap 2608811 2608800 ATAAGTATGACTAAA GCCACATCC AATATA GGACGTGGC TTTTAGTATCGTTCC USA300HOU_2471 2609170 - 2608979 - | hypothetical protein TERM 2737 2609446 - 2609399 - H 100 -12.4 -4.39166 | gap 1, opp_overlap 2609399 CTTTAGACATTAAAA GCTTCTAACATGATAC-GGAA TATGAGG TTCCTGTATCACATTAGAAGC TTTTTTGTTGCGGTG TERM 2738 2609399 - 2609446 + H 100 -8.7 -5.46657 | gap 1, opp_overlap 2609399 CTTTAGACATTAAAA GCTTCTAACATGATAC-GGAAT ATGAG GTTCCTGTATCACATTAGAAGC TTTTTTGTTGCGGTG USA300HOU_2472 2609605 - 2609727 + | hypothetical protein USA300HOU_2473 2610525 - 2609731 - | lipoprotein TERM 2739 2610422 - 2610436 + g 77 -5.6 -4.98911 | AATGTGTCTTTAATT TGGGCG TTT CGACCA TTTGTTTTTGTCATA TERM 2740 2610921 - 2610891 - R 100 -7.8 -6.04324 | opp_overlap 2610890 CCAAAAAATAAAAAA GAAGTTAAACAA AGATTGG TTGCTTAACTTC CATTATTGAATTCAT TERM 2741 2610981 - 2610969 - R 82 -7.7 -4.41633 | opp_overlap 2610969 2610968, overlap 2610966 GATCCCGAAAAATAA TGGCT AAT AGCCA CTTATAGTCGAAATT TERM 2742 2611002 - 2611037 + r 75 -7.2 -4.09276 | opp_overlap 2610998 2611002 2611003 2611005 2611010, overlap 2611003 2611005 AGTCGAAATTATGAA CTATATAATTCATTTA TTAT TAAATGGATTATATAC TTATTGTGTTTCTTA TERM 2743 2611003 - 2611036 + r 83 -10.7 -3.03939 | opp_overlap 2610998 2611002 2611003 2611005 2611010, overlap 2611002 2611005 GTCGAAATTATGAAC TATATAATTCATTTA TTAT TAAATGGATTATATA CTTATTGTGTTTCTT TERM 2744 2611005 - 2611034 + r 72 -8.9 -3.05036 | opp_overlap 2610998 2611003 2611002 2611005 2611010, overlap 2611003 2611002 CGAAATTATGAACTA TATAATTCATTTA TTAT TAAATGGATTATA TACTTATTGTGTTTC USA300HOU_2474 2611348 - 2611061 - | hypothetical protein USA300HOU_2475 2611677 - 2611351 - | hypothetical protein TERM 2745 2611595 - 2611617 + g 84 -6.4 -5.12172 | opp_overlap 2611589 2611594, overlap 2611598 CTTAATTCATCAATT TGATTGAATG CAT CATTCAATTG TTTTCTTTCTTCATC TERM 2746 2611598 - 2611614 + g 84 -8.1 -4.62561 | opp_overlap 2611589 2611594, overlap 2611595 AATTCATCAATTTGA TTGAATG CAT CATTCAA TTGTTTTCTTTCTTC TERM 2747 2611873 - 2611892 + r 70 -5 -4.60924 | opp_overlap 2611877, overlap 2611874 2611877 TTTCTTAATTCATCT ATAACCTC TTCA GAGGTTAA TTTTTCACCAATTTC TERM 2748 2611874 - 2611891 + r 72 -8.5 -3.35832 | opp_overlap 2611877, overlap 2611873 2611877 TTCTTAATTCATCTA TAACCTC TTCA GAGGTTA ATTTTTCACCAATTT USA300HOU_2478 2614670 - 2613894 - | lipoprotein USA300HOU_2479 2614770 - 2614865 + | hypothetical protein USA300HOU_2480 2617834 - 2614973 - | helicase TERM 2749 2617709 - 2617724 + g 76 -2.6 -5.39905 | TTCATCTATAATTGT TGAAAG AACT TTTTCA TTTTTATTATTTACT USA300HOU_2481 2618228 - 2617836 - | hydrolase TERM 2750 2617943 - 2617955 + g 74 -6.3 -4.44046 | TCTTATGTTCAGTTA GAGTT GGT AACTC TTTGTTTAAAGTACA TERM 2751 2618209 - 2618195 - G 76 -3.6 -5.31275 | TGTTATCAGAAAAAA TAATAG CTC CTACTA CATTGATTACTTTTT TERM 2752 2618816 - 2618799 - g 73 -7.1 -3.91488 | AATTCGCCCAAATAA TTGCTAA TGTA TTAGCAA ACCATCAAATAACAG USA300HOU_2482 2618345 - 2620153 + | bifunctional phosphoglucomutase/phosphomannomutase USA300HOU_2483 2620437 - 2620703 + | hypothetical protein USA300HOU_2484 2620847 - 2621155 + | hypothetical protein TERM 2753 2621251 - 2621224 - T 100 -8.6 -5.40072 | opp_overlap 2621224, overlap 2621226 TGTTTGCGAAAAAAA TACAACCTTGTA CGAA TACAAAGTTGCA TTAATATAGAATCAT TERM 2754 2621249 - 2621226 - T 84 -9 -4.34482 | opp_overlap 2621224, overlap 2621224 TTTGCGAAAAAAATA CAACCTTGTA CGAA TACAAAGTTG CATTAATATAGAATC USA300HOU_2485 2622670 - 2621477 - | major facilitator superfamily cation symporter TERM 2755 2622968 - 2622924 - R 84 -6.6 -5.21236 | gap 1, opp_overlap 2622924 2622926 2622929 AATTTATAACAAAAA TACACCCCTTAAAGTTAGGTC TTTC AATCCAACTTTT-GGGGTGTA TATCATTCTCATCAT TERM 2756 2623046 - 2623060 + r 70 -5.8 -4.30719 | opp_overlap 2623045 TATTATTTAAATTAT GAATTA TTT TAATTC TTTCTTCTACGAGCC TERM 2757 2623564 - 2623577 + r 74 -3.1 -5.40464 | opp_overlap 2623550 ACGTTTTGTTTCAAA CGGTA TCTC TACTG TTTTTGTTTCTGGTG TERM 2758 2623828 - 2623840 + r 71 -3.4 -5.27779 | TTTACTAATAATTTC TCCA GTTAA TGGA TTTTTTAGTGTTGGC TERM 2759 2624212 - 2624224 + r 71 -3.4 -5.27779 | TTTACTAATAATTTC TCCA GTTAA TGGA TTTTTTAGTGTTGGC TERM 2760 2624596 - 2624608 + r 71 -3.4 -5.27779 | TTTACTAATAATTTC TCCA GTTAA TGGA TTTTTTAGTGTTGGC TERM 2761 2624980 - 2624992 + r 71 -3.4 -5.28683 | TTTACTAATAATTAC TCCA GTTAA TGGA TTTTTTAGTGTTGGT TERM 2762 2626685 - 2626643 - R 80 -2.2 -5.79595 | TTCTAAAATAAAAAA TACCTTAACGCATTTAAA AAATACA TTTAACTGCACCAAGATA TTAAAATCTCGAAAC TERM 2763 2626696 - 2626714 + r 71 -9 -2.73513 | opp_overlap 2626694 2626700, overlap 2626695 2626700 AGATATTAAAATCTC GAAACATA CTT TATGTTTC ATTAATATTTATTTC sarT 2627065 - 2626706 - | staphylococcal accessory regulator T TERM 2764 2627265 - 2627293 + H 91 -10.7 -3.76393 | opp_overlap 2627276 2627287, overlap 2627263 2627259 ATTTTTAGTTATTTA TATTTTATATATA TAT TATATATAAAATA TTTAGGTTAACATGT sarU 2627387 - 2628130 + | staphylococcal accessory regulator U galU 2629207 - 2628341 - | UTP--glucose-1-phosphate uridylyltransferase TERM 2765 2629371 - 2629337 - R 100 -11.7 -5.09426 | opp_overlap 2629337 TTTAATTTTAAAAAA CAGGCTTACTTCATA TAATT TATGAAATAAACCTG TCAATTTTGGATTGA fnbB 2632209 - 2629387 - | fibronectin-binding protein B TERM 2766 2629874 - 2629890 + g 74 -5.9 -4.52349 | ACACTATTGTGTCCA CCGAATT GAT AATTTGG TTTATCTTTATTTGT TERM 2767 2630518 - 2630545 + g 83 -8 -4.39568 | gap 1, opp_overlap 2630526, overlap 2630526 TGTATCTTCTTCATA TTCAACAACATCA GCA TGATGTT-TTGAA TTTTCATGTGTCGAT TERM 2768 2630526 - 2630538 + g 74 -6.3 -4.44277 | opp_overlap 2630526, overlap 2630518 CTTCATATTCAACAA CATCA GCA TGATG TTTTGAATTTTCATG TERM 2769 2632875 - 2632841 - R 100 -9.5 -5.80817 | opp_overlap 2632841 TTTAATATAAAAAAA CAGGCTTACTTCATA TAATT TATGAAATAAACCCG TCAATTTTTGTTTAA fnbA 2635947 - 2632891 - | fibronectin-binding protein A TERM 2770 2634064 - 2634091 + g 83 -8 -4.39568 | gap 1, opp_overlap 2634072, overlap 2634072 TGTATCTTCTTCATA TTCAACAACATCA GCG TGATGTT-TTGAA TTTTCATGTGTAGAT TERM 2771 2634072 - 2634084 + g 74 -6.3 -4.44277 | opp_overlap 2634072, overlap 2634064 CTTCATATTCAACAA CATCA GCG TGATG TTTTGAATTTTCATG TERM 2772 2635180 - 2635192 + g 76 -7.7 -3.90038 | overlap 2635174 TTTTCTAGCAGTTGA TACGC CAT GCGTA TTTACATTATTTGAT TERM 2773 2636141 - 2636155 + r 73 -8.6 -3.12405 | opp_overlap 2636140 2636141, overlap 2636140 2636137 CAAGTCATCAGAAAC CCTTGT CAC ACAAGG CTTGTATTTTTTATA TERM 2774 2636155 - 2636141 - R 72 -8.6 -2.99161 | opp_overlap 2636141 2636140 2636137, overlap 2636140 CAAGTCATCAGAAAC CCTTGT CAC ACAAGG CTTGTATTTTTTATA TERM 2775 2636403 - 2636356 - R 100 -10.2 -4.82901 | opp_overlap 2636355 2636356 2636360, overlap 2636360 TTTTCTGCATAAAAA TAAACGTGTTTCAAGGCAAT ATATTGCA ATTACCTAAAAACACGTTTA CTTAATATTTAGTTA TERM 2776 2636399 - 2636360 - R 82 -6.6 -4.96501 | opp_overlap 2636360 2636356 2636355, overlap 2636356 CTGCATAAAAATAAA CGTGTTTCAAGGCAAT ATATTGCA ATTACCTAAAAACACG TTTACTTAATATTTA gntP 2637774 - 2636416 - | GntP family gluconate:proton (H+) symporter gntK 2639444 - 2637891 - | gluconokinase gntR 2640148 - 2639468 - | gluconate operon transcriptional repressor TERM 2777 2640192 - 2640173 - R 73 -9.4 -2.66316 | opp_overlap 2640173, overlap 2640175 2640177 TCCTTCATTACACGA CATACTTG TATA CAAGTATG TTAATATAGTTATTA TERM 2778 2640173 - 2640192 + r 78 -9.4 -3.35176 | opp_overlap 2640173 2640175 2640177 TCCTTCATTACACGA CATACTTG TATA CAAGTATG TTAATATAGTTATTA USA300HOU_2495 2641066 - 2640302 - | MerR family transcriptional regulator USA300HOU_2496 2641923 - 2641231 - | hypothetical protein USA300HOU_2497 2642642 - 2642154 - | hypothetical protein USA300HOU_2498 2644532 - 2642709 - | hypothetical protein TERM 2779 2645000 - 2644968 - R 90 -6.3 -5.53288 | TTCAACGCAAAAAAA GCAATAAGCCCCAAC TAT GTGAAAGCTTACTGC TTGTTTAAATTATTT USA300HOU_2499 2646287 - 2645010 - | major facilitator superfamily glucarate:cation symporter USA300HOU_2500 2646834 - 2647445 + | alkaline phosphatase TERM 2780 2647495 - 2647531 + T 100 -15.4 -5.25805 | opp_overlap 2647495 TTCTATAAACAAAAA GCAGTGAATCATTCCA TCTAT TGAAATGATTCACTGC TTTTTTAAGTTTATT TERM 2781 2647531 - 2647495 - T 100 -17.6 -5.38054 | opp_overlap 2647495 TTCTATAAACAAAAA GCAGTGAATCATTCCA TCTAT TGAAATGATTCACTGC TTTTTTAAGTTTATT USA300HOU_2501 2648705 - 2647542 - | major facilitator transporter USA300HOU_2502 2649162 - 2648698 - | MarR family transcriptional regulator USA300HOU_2503 2649590 - 2650285 + | ABC transporter ATP-binding protein USA300HOU_2504 2650287 - 2651057 + | ABC transporter ATP-binding protein TERM 2782 2651122 - 2651149 + F 75 -4.8 -5.14965 | opp_overlap 2651122 AAAATCATTTTCAAA TCCCTTCACC CAAATAAT GGTGCGGGGA TTTTTTCATCCAAAT USA300HOU_2505 2651430 - 2653394 + | fructose-bisphosphatase TERM 2783 2653530 - 2653502 - g 100 -14.7 -5.50499 | opp_overlap 2653502 2653527 CTACACCGAAAAAAA TCCCCTCACTATT GCG AGTAGTGAGGGGA TTGGTGTATCTATGC TERM 2784 2653502 - 2653530 + G 100 -16.9 -3.36655 | opp_overlap 2653502, overlap 2653527 CTACACCGAAAAAAA TCCCCTCACTATT GCG AGTAGTGAGGGGA TTGGTGTATCTATGC USA300HOU_2506 2653467 - 2653619 + | hypothetical protein TERM 2785 2653666 - 2653654 - f 71 -4.9 -4.72029 | opp_overlap 2653654 TCCAATTTAACAAAA TACTA TAT TAGTA CTATATTTTTCATTA TERM 2786 2654166 - 2654181 + G 70 -4 -4.87893 | gap 1 TTTAATTGCTGTGCT TGGCGGT GTT ACC-CCA TTTTTAATTGCGATT USA300HOU_2507 2653738 - 2654817 + | hypothetical protein TERM 2787 2654906 - 2654867 - T 100 -10.2 -5.46698 | gap 1, opp_overlap 2654867 TTCAAAATCAAAAAA GCGGGCAGATG-AAAAG TAAAAAT CTTTTCCATCTGTCCGC TTCTTAATAGAACTG TERM 2788 2654867 - 2654906 + T 100 -12.4 -3.72324 | gap 1, opp_overlap 2654867 TTCAAAATCAAAAAA GCGGGCAGATG-AAAAG TAAAAAT CTTTTCCATCTGTCCGC TTCTTAATAGAACTG USA300HOU_2508 2655515 - 2654922 - | hydrolase USA300HOU_2509 2656505 - 2655537 - | lactoylglutatione lyase USA300HOU_2510 2657017 - 2656583 - | MarR family transcriptional regulator TERM 2789 2657421 - 2657409 - H 70 -4.1 -5.00616 | GGTGTTGGCAAAAAA CTACT TAA AGCAG TTGTTGAACACGCTC TERM 2790 2657538 - 2657561 + H 100 -13.2 -5.46657 | opp_overlap 2657536 GGTTAAATAAATTTT GCGATGGTGC AACT GTACCATCGC TTTTTTGTTCGCATC USA300HOU_2511 2657699 - 2658505 + | dioxygenase TERM 2791 2658572 - 2658544 - T 100 -12.6 -4.18018 | gap 1, opp_overlap 2658544 TTTTTTCACGCAAAA GCCTGCGATT-CA TTTA TGTAATCGCAGGC TTTTTTATTGCTAAC TERM 2792 2658544 - 2658572 + T 100 -12.6 -5.5112 | gap 1, opp_overlap 2658544 TTTTTTCACGCAAAA GCCTGCGATT-CA TTTA TGTAATCGCAGGC TTTTTTATTGCTAAC USA300HOU_2512 2659287 - 2658625 - | FMN reductase TERM 2793 2659847 - 2659836 - g 76 -4.4 -5.09895 | GATTTAGCTAAAAAA CACA ATAT TGTG ATATCTAACGTTCCT TERM 2794 2660370 - 2660354 - g 72 -5.9 -4.29738 | TGATACTTATGAAAA TGAAGCA GCA TACTTCA CAAATGACTGGACTA ddh 2659566 - 2660558 + | D-lactate dehydrogenase TERM 2795 2660568 - 2660604 + T 100 -13.9 -4.6645 | opp_overlap 2660574, overlap 2660574 AATTAATATATATAT TTAAAAGCAAAGGCGCG CCA TGTGCCTTTGCTTTTTA TTTTGTATATCTGTA TERM 2796 2660574 - 2660598 + T 100 -12.9 -5.58522 | opp_overlap 2660574, overlap 2660568 TATATATATTTAAAA GCAAAGGCGCG CCA TGTGCCTTTGC TTTTTATTTTGTATA TERM 2797 2660598 - 2660574 - T 91 -10 -4.27259 | opp_overlap 2660574 2660568 TATATATATTTAAAA GCAAAGGCGC GCCAT GTGCCTTTGC TTTTTATTTTGTATA USA300HOU_2514 2661607 - 2660807 - | HAD family phosphatase TERM 2798 2661830 - 2661789 - H 100 -10.6 -4.67556 | gap 1, opp_overlap 2661786 2661791 2661821 AGAATATTGTAAAAA TATCACACTATATT-TATC ATTTA GACAAAATATAGTGTGATA TACTAATTTATAACA USA300HOU_2515 2661928 - 2662563 + | ABC transporter ATP-binding protein USA300HOU_2516 2662569 - 2663300 + | hypothetical protein TERM 2799 2663332 - 2663310 - T 71 -3.3 -5.31877 | opp_overlap 2663310, overlap 2663313 ATGTAGTATAAAAAA GGAGCGGTA TACAT TGCCGCTTC TTTTTATTATGTATT TERM 2800 2663310 - 2663332 + T 90 -7.7 -5.28561 | opp_overlap 2663310 2663313 ATGTAGTATAAAAAA GGAGCGGTA TACAT TGCCGCTTC TTTTTATTATGTATT TERM 2801 2663422 - 2663403 - T 100 -8.6 -5.69793 | opp_overlap 2663403 ATACCAAACAAAAAA CAGTCTCG CAAT CAAGACTG TTTTCCACTCAATAT TERM 2802 2663403 - 2663422 + T 70 -6.4 -4.15006 | opp_overlap 2663403 ATACCAAACAAAAAA CAGTCTCG CAAT CAAGACTG TTTTCCACTCAATAT srtA 2664080 - 2663460 - | sortase TERM 2803 2664318 - 2664306 - g 73 -7.7 -3.73281 | AAAAGAGGATTTAAA CGCTA TAT TAGCG ATATACAATGATGCC USA300HOU_2518 2664274 - 2664765 + | acetyltransferase TERM 2804 2664911 - 2664932 + F 89 -11.7 -2.72344 | opp_overlap 2664915, overlap 2664913 2664915 ATGTAGTGGTTCTTA CACATTAGC CACA GCTAATGTG TACTTAAAAATAGGA TERM 2805 2664969 - 2664949 - f 81 -9.1 -3.61527 | overlap 2664951 ACTTAAAAATAGGAA TACATGAGT AAA ACTCATGCA TAAGAAATACTAATT TERM 2806 2664967 - 2664951 - f 78 -9.5 -3.37164 | overlap 2664949 TTAAAAATAGGAATA CATGAGT AAA ACTCATG CATAAGAAATACTAA TERM 2807 2665042 - 2665058 + F 72 -8 -3.68024 | CGCACATTATTGTAA GCTGAC TTTTC GTCAGC TTCTGTGTTGGGGCC TERM 2808 2665092 - 2665080 - f 83 -7.7 -4.56597 | opp_overlap 2665079 GTTGGGGCCCAAAAA GCTTG TTA CAAGC GCATTTTCGTTCAGT USA300HOU_2519 2665243 - 2665434 + | hypothetical protein USA300HOU_2520 2665533 - 2665435 - | hypothetical protein TERM 2809 2665483 - 2665522 + g 100 -12.2 -5.30686 | opp_overlap 2665483 2665486 TTCAGAGATAATTAA GAAGCATCTATCTGGTAC TAAT GATCCAGACAGATGCTTC TTTTTTATCAATATT TERM 2810 2665522 - 2665483 - G 100 -14.4 -3.52316 | opp_overlap 2665483, overlap 2665486 TTCAGAGATAATTAA GAAGCATCTATCTGGTAC TAAT GATCCAGACAGATGCTTC TTTTTTATCAATATT TERM 2811 2665519 - 2665486 - G 87 -10.3 -3.887 | opp_overlap 2665483, overlap 2665483 AGAGATAATTAAGAA GCATCTATCTGGTAC TAAT GATCCAGACAGATGC TTCTTTTTTATCAAT sdhA2 2666451 - 2665552 - | L-serine ammonia-lyase alpha subunit sdhB2 2667145 - 2666465 - | L-serine ammonia-lyase beta subunit USA300HOU_2523 2668191 - 2667148 - | transcriptional regulator TERM 2812 2668310 - 2668286 - H 71 -7.4 -3.73224 | opp_overlap 2668284 2668286 TTATCTGTTATCAAA TCAAATATTT AAGTG AAATATTTGA TATTTGTGAAAGATT TERM 2813 2669271 - 2669296 + G 77 -5.5 -4.84262 | gap 1, overlap 2669257 TGTCGATTGGTACGT CACTGCTCGACT TGT AGTC-AGTGGTG TTTTCTTACTTATTA USA300HOU_2524 2669101 - 2670063 + | hypothetical protein USA300HOU_2525 2671113 - 2670145 - | hypothetical protein USA300HOU_2526 2671590 - 2671246 - | hypothetical protein USA300HOU_2527 2672042 - 2671632 - | hypothetical protein USA300HOU_2528 2672107 - 2672208 + | hypothetical protein TERM 2814 2672326 - 2672299 - T 100 -14.3 -4.7254 | opp_overlap 2672299 ATTGCGCACTAAAAA GGCAGTAGCTT CATTTT AAGCTACTGCC TTTTGTAACGTATTC TERM 2815 2672299 - 2672326 + T 100 -14.3 -4.42619 | opp_overlap 2672299 ATTGCGCACTAAAAA GGCAGTAGCTT CATTTT AAGCTACTGCC TTTTGTAACGTATTC USA300HOU_2529 2672422 - 2672354 - | hypothetical protein ptsG 2674521 - 2672422 - | PTS family glucose/glucoside (glc) porter component IIABC TERM 2816 2674318 - 2674339 + g 83 -5.9 -5.03715 | opp_overlap 2674323 TGCTTCCATGACCGA CGAAATCAT TACA ATGATATCG TTTTTTAACCATGGT TERM 2817 2674421 - 2674407 - G 93 -8.6 -4.6971 | overlap 2674397 CAAACGCTAATAAAA TACCAG CTG CTGGTA AAATCGCAACAGGTA TERM 2818 2674587 - 2674533 - R 100 -13.4 -5.64274 | gap 3, opp_overlap 2674536 CCATGTACAAAAAAA GCAGGCATGAACAAACAA--G-ACTAT TCTC ATAGTGCGGTTGTTTGCTCATGCCTGC ATTACCAGTAACACG TERM 2819 2674753 - 2674709 - R 100 -9.6 -4.55295 | opp_overlap 2674714, overlap 2674714 TTTGTGATAAATAAA CAAAACGGCAATTCCCATTT TGTTG AAATAGAAATTACCGTTTTT ATAGTTCAATTCAAT TERM 2820 2674748 - 2674714 - R 100 -9.5 -5.22481 | opp_overlap 2674714, overlap 2674709 GATAAATAAACAAAA CGGCAATTCCCATTT TGTTG AAATAGAAATTACCG TTTTTATAGTTCAAT ilvB2 2676528 - 2674789 - | pyruvate oxidase TERM 2821 2676183 - 2676204 + g 72 -9.5 -2.705 | TTTGTAAATTTGTTT CTTGGAATG CTTT CGTTCCAAG TGCTGTACTATTCGT USA300HOU_2532 2677264 - 2676575 - | hypothetical protein USA300HOU_2533 2677652 - 2677257 - | hypothetical protein TERM 2822 2677851 - 2677802 - R 76 -2.5 -5.61596 | gap 2, overlap 2677805 ATTTTCACAAAAAAA CACTCATTATTTCAATGACCCAC GTAATG ATGCGCC-TT-AAATAATGAGTG CTTTATTAATATGTT USA300HOU_2534 2678752 - 2677865 - | LysR family transcriptional regulator TERM 2823 2678180 - 2678170 - G 70 -4 -4.93877 | CTTTATTAAATAAAA TGAA GTC TTCA CCTGCTAAATCTTCG USA300HOU_2535 2678910 - 2679128 + | hypothetical protein TERM 2824 2679162 - 2679185 + F 100 -13.2 -4.93316 | CACATCATCTCATGT TAGCGCTCTG ATTG CAGGGCGCTA TTTTTAATGTTATTG USA300HOU_2536 2679517 - 2679948 + | secretory antigen USA300HOU_2537 2680614 - 2680480 - | hypothetical protein USA300HOU_2538 2680965 - 2680708 - | hypothetical protein TERM 2825 2680871 - 2680884 + g 80 -2.5 -5.63504 | TCGCTGTTAATCTCA TTTAA TTTT TTAAA TTTTTTTCTAACCTT USA300HOU_2539 2682821 - 2681544 - | hydroxymethylglutaryl-CoA reductase mvaS 2683075 - 2684241 + | hydroxymethylglutaryl-CoA synthase TERM 2826 2684273 - 2684326 + T 71 -7 -3.89881 | gap 1, opp_overlap 2684271 2684278 2684279, overlap 2684279 ACATATAATAAAACC TA-AAAGCAGCAGTAAGACCACTTC TAATT GAAATCGTCTTACTGCTGTTCTCTA TTTATAACACTTCGT TERM 2827 2684320 - 2684278 - T 100 -12.9 -4.4836 | opp_overlap 2684273 2684279, overlap 2684271 2684279 TAATAAAACCTAAAA GCAGCAGTAAGACCACTTC TAATT GAAATCGTCTTACTGCTGT TCTCTATTTATAACA TERM 2828 2684279 - 2684319 + T 100 -14.2 -3.80279 | opp_overlap 2684278 2684271 2684279, overlap 2684273 AATAAAACCTAAAAG CAGCAGTAAGACCACTTC TAATT GAAATCGTCTTACTGCTG TTCTCTATTTATAAC TERM 2829 2684319 - 2684279 - T 100 -16.4 -3.27389 | opp_overlap 2684279 2684273, overlap 2684278 2684271 AATAAAACCTAAAAG CAGCAGTAAGACCACTTC TAATT GAAATCGTCTTACTGCTG TTCTCTATTTATAAC ogt 2684932 - 2684411 - | methylated-DNA--[protein]-cysteine S-methyltransferase TERM 2830 2686737 - 2686754 + G 70 -7.1 -3.77491 | opp_overlap 2686736 2686745, overlap 2686741 2686745 TTGGTAAAACAGAGC TTGCTAA ACAA TTAGCAA TTGATTTATTTGGTA TERM 2831 2687144 - 2687161 + G 79 -8.5 -3.78234 | GAATTCCTTAACCGC TTCAACG GCAT CGTTGAA TTCTTACATTTAGAT clp 2685341 - 2687446 + | endopeptidase Clp TERM 2832 2687476 - 2687505 + T 91 -5.1 -5.73672 | gap 1, opp_overlap 2687476 ATCGCGCATCAAAAA TGAGCATCAGGT CGCCCTT GCCTG-TGCTCA TTTTTTTAATTATTT USA300HOU_2543 2687694 - 2687515 - | hypothetical protein TERM 2833 2687690 - 2687661 - G 74 -2.3 -5.4477 | AAATTGCTAAAAAAA TTAAAATGTTAAT AATG ACTGACACTTTAA CCACTCCTTAAACAA USA300HOU_2544 2689692 - 2687698 - | FeoB family ferrous iron (Fe2+) uptake protein USA300HOU_2545 2689931 - 2689704 - | hypothetical protein TERM 2834 2690131 - 2690091 - R 100 -19.3 -5.08824 | opp_overlap 2690082 CTTCCATGCAAAAAA CCTCCGCTTCAAATGTC ATTGATA GACATTTAAAGCGGAGG CATGTACATGTTATT USA300HOU_2546 2692636 - 2690147 - | resistance-nodulation-cell division acriflavin:proton (H+) antiporter TERM 2835 2692252 - 2692263 + g 74 -5.8 -4.49132 | CGTCATATGTGATAT CTGC AAAT GCAG TTGTTTTATCTTTAC USA300HOU_2547 2692781 - 2693329 + | TetR family transcriptional regulator TERM 2836 2693373 - 2693411 + T 100 -8.4 -5.98675 | gap 1, opp_overlap 2693373 CATTCATAATAAAAA CGATAGT-GTACACG TTAATGAATT CGTGTACTACTATCG TTTTTTATTTTTATC TERM 2837 2693411 - 2693373 - T 93 -8.4 -5.20333 | gap 1, opp_overlap 2693373 CATTCATAATAAAAA CGATAGT-GTACACG TTAATGAATT CGTGTACTACTATCG TTTTTTATTTTTATC USA300HOU_2548 2693573 - 2693406 - | hypothetical protein TERM 2838 2693667 - 2693645 - R 89 -6.9 -5.38958 | opp_overlap 2693645 AGTTATAAATAAAAA GAGCCAACC GCAAT GGATGGCCC TTGTTCATTATGAAG USA300HOU_2549 2695229 - 2693685 - | 1-pyrroline-5-carboxylate dehydrogenase USA300HOU_2550 2696018 - 2695419 - | galactoside O-acetyltransferase USA300HOU_2551 2696248 - 2696448 + | hypothetical protein TERM 2839 2696549 - 2696585 + F 100 -19.7 -5.61881 | opp_overlap 2696549 2696551 2696553 2696555 TATAGATGCTAAGTA GAGAGATTGTTGTGCAA TGT TTGCACGGCAATCTCTC TTTTTCTTTTTAAAA TERM 2840 2696585 - 2696549 - f 100 -15.3 -2.75039 | opp_overlap 2696549, overlap 2696551 2696553 2696555 TATAGATGCTAAGTA GAGAGATTGTTGTGCAA TGT TTGCACGGCAATCTCTC TTTTTCTTTTTAAAA TERM 2841 2696583 - 2696551 - f 90 -12.1 -2.9175 | opp_overlap 2696549, overlap 2696549 2696553 2696555 TAGATGCTAAGTAGA GAGATTGTTGTGCAA TGT TTGCACGGCAATCTC TCTTTTTCTTTTTAA TERM 2842 2696581 - 2696553 - f 72 -8.9 -3.00774 | opp_overlap 2696549, overlap 2696551 2696549 2696555 GATGCTAAGTAGAGA GATTGTTGTGCAA TGT TTGCACGGCAATC TCTCTTTTTCTTTTT copA 2696688 - 2699096 + | P-ATPase superfamily P-type ATPase copper (Cu2+) transporter TERM 2843 2699368 - 2699336 - f 100 -15.1 -3.36492 | GCTCCAACTGCATAA GAGCCACTAATTATT ATA AATAATAAGTGGCTC TAAAAGGAGGTGAAT merP 2699387 - 2699593 + | MerTP family mercury (Hg2+) permease, binding protein MerP TERM 2844 2699679 - 2699633 - T 76 -3.9 -5.40004 | gap 1 CACCAAATTAAAAAA TCGAACTGATGAGA-ATCCCAA CAAT CCAAATTATCTCATCAGTTCGA TTTTTAATTTACTCG USA300HOU_2554 2700711 - 2699683 - | D-lactate dehydrogenase USA300HOU_2555 2701858 - 2700704 - | aminotransferase crtN 2703793 - 2702285 - | squalene synthase TERM 2845 2703377 - 2703403 + g 74 -3 -5.252 | overlap 2703380 GCGATACGTTCTTTC TAAGAAATAGCG ACG TGCAATTTCATA TTTTTTATAAACATC crtM 2704668 - 2703805 - | squalene desaturase USA300HOU_2558 2705841 - 2704705 - | glycosyltransferase USA300HOU_2559 2707331 - 2705838 - | phytoene dehydrogenase USA300HOU_2560 2707821 - 2707324 - | hypothetical protein TERM 2846 2707967 - 2707936 - R 100 -10.3 -5.58522 | opp_overlap 2707936 TATATAAAACAAAAA CGCCAATACTCTC ATGTTA GAGAATATTGACG TCATTTGATTTACAT USA300HOU_2561 2708754 - 2707987 - | secretory antigen TERM 2847 2708157 - 2708171 + g 75 -8.6 -3.43848 | opp_overlap 2708156 2708159, overlap 2708154 TTGTTTGCATGATAG CACCAA CTT TTGGTG TATTGTTCACTGTAT USA300HOU_2562 2710926 - 2709115 - | acetyltransferase USA300HOU_2563 2711925 - 2711437 - | GNAT family acetyltransferase TERM 2848 2712154 - 2712130 - R 100 -7.9 -5.87996 | opp_overlap 2712130 2712129 TAATTAATAAAAAAA CTCTCCCCA ATTTCTA TGGGAAGAG CTATATATTTAATGT isaA 2712902 - 2712201 - | immunodominant antigen A TERM 2849 2712504 - 2712528 + g 81 -9.3 -3.81428 | overlap 2712505 2712522 2712523 GCTGTAGTTATGGTA AGTTGGAGCTG AAA CAGCTTCAACG TTTGAGTTACTTGAT TERM 2850 2712505 - 2712527 + g 86 -12.8 -2.88134 | overlap 2712504 2712522 2712523 CTGTAGTTATGGTAA GTTGGAGCTG AAA CAGCTTCAAC GTTTGAGTTACTTGA TERM 2851 2713220 - 2713230 + r 72 -4 -5.10461 | CAGCTTTCGTAATAT TACA GAT TGTA TTTTTGTTACATAGC TERM 2852 2713340 - 2713303 - R 100 -10.1 -4.90917 | opp_overlap 2713301 2713303 AAACGCAATTAAAAA GCAATCAACAAATATGT TTCT ACACATGTATTGATTGC TATTATTGTTGTATA USA300HOU_2565 2714565 - 2713510 - | hypothetical protein USA300HOU_2566 2714942 - 2715544 + | TetR family transcriptional regulator TERM 2853 2715714 - 2715751 + F 90 -6.5 -5.63236 | opp_overlap 2715712 2715715, overlap 2715715 AACTGAATGAAAATA AGCTTGTCATTAAAA CATATAGA TTTTAGTGACAAGCA TTTTTGTTTTTGCGT TERM 2854 2715715 - 2715750 + F 90 -10 -3.95502 | opp_overlap 2715712 2715715, overlap 2715714 ACTGAATGAAAATAA GCTTGTCATTAAAA CATATAGA TTTTAGTGACAAGC ATTTTTGTTTTTGCG TERM 2855 2715750 - 2715715 - f 81 -8.5 -4.33004 | opp_overlap 2715715 2715714, overlap 2715712 ACTGAATGAAAATAA GCTTGTCATTAAAAC ATATAG ATTTTAGTGACAAGC ATTTTTGTTTTTGCG USA300HOU_2567 2715742 - 2716242 + | hypothetical protein USA300HOU_2568 2716462 - 2716692 + | hypothetical protein USA300HOU_2569 2717219 - 2716842 - | lactoylglutatione lyase USA300HOU_2570 2718057 - 2717236 - | hypothetical protein TERM 2856 2717655 - 2717671 + g 70 -3.8 -5.00027 | CTGTTGCATTTATAT TAGATT CCATT AATCTA TTTTCTATTTTTGCT USA300HOU_2571 2718376 - 2718077 - | hypothetical protein USA300HOU_2572 2718507 - 2719064 + | TetR family transcriptional regulator USA300HOU_2573 2719057 - 2719761 + | dehydrogenase TERM 2857 2719825 - 2719807 - f 74 -3.1 -5.38047 | GAGGTATATAAAAAA TGCTTCT GCAAT AGATGCA ATAAACATGCAATAC USA300HOU_2574 2719859 - 2720869 + | hypothetical protein TERM 2858 2721337 - 2721320 - g 71 -3.5 -5.19879 | gap 1 TTGGAAAGATAAAAA TGATG-AC ATT GTGCATCA AATTTTAACAGAAGG TERM 2859 2721651 - 2721625 - g 95 -8.8 -4.84602 | ATATAAATAAAGAAA CTGGCATACCTA TTG TAGATATTCCAG GCGGTCACTTAGGTT USA300HOU_2575 2720889 - 2721719 + | hydrolase TERM 2860 2721739 - 2721785 + T 84 -6.6 -5.29846 | opp_overlap 2721740 2721742, overlap 2721742 TTGTTCTCTAATAAA ACAGCTTGGACAGTTTTCAAAT TAT ATTTGATGGCTGACCAAGCTTA TTTTTATTTACGCTT TERM 2861 2721784 - 2721740 - T 73 -5.7 -4.63218 | opp_overlap 2721739 2721742, overlap 2721742 TGTTCTCTAATAAAA CAGCTTGGACAGTTTTCAAAT TAT ATTTGATGGCTGACCAAGCTT ATTTTTATTTACGCT TERM 2862 2721742 - 2721782 + T 100 -12.7 -4.72696 | opp_overlap 2721742 2721740, overlap 2721739 TTCTCTAATAAAACA GCTTGGACAGTTTTCAAAT TAT ATTTGATGGCTGACCAAGC TTATTTTTATTTACG TERM 2863 2721782 - 2721742 - T 79 -8.3 -3.93367 | opp_overlap 2721739 2721742, overlap 2721740 TTCTCTAATAAAACA GCTTGGACAGTTTTCAAAT TAT ATTTGATGGCTGACCAAGC TTATTTTTATTTACG cobW3 2722756 - 2721866 - | cobalamin (vitamin B12) biosynthesis protein USA300HOU_2577 2724194 - 2722854 - | FeoB family ferrous iron (Fe2+) uptake protein USA300HOU_2578 2725294 - 2724188 - | hypothetical protein TERM 2864 2725345 - 2725359 + r 74 -7.2 -3.91144 | opp_overlap 2725345 GTTTTTGATTATAAA TCGTAA TAA TTACGA TTTATAAAGTATAGA TERM 2865 2725359 - 2725345 - R 74 -7.2 -3.96148 | opp_overlap 2725345 GTTTTTGATTATAAA TCGTAA TAA TTACGA TTTATAAAGTATAGA TERM 2866 2725447 - 2725410 - R 74 -2.1 -5.52079 | gap 1, opp_overlap 2725420 ATATTAAAAGAAAAA CTTCCGTTATTGTAGA GAATTCA TCTACATTT-CGGAAG TTGGTATGTGTCTTT TERM 2867 2725607 - 2725633 + r 83 -9.7 -3.56558 | overlap 2725610 TTCGTCGTCCCACCC CAATAAAGAAA AAGTA TTTCTTTATTG TTGTGTAACTTCTCC USA300HOU_2579 2725924 - 2725628 - | hypothetical protein USA300HOU_2580 2726280 - 2725912 - | hypothetical protein USA300HOU_2581 2726573 - 2726295 - | hypothetical protein TERM 2868 2726697 - 2726683 - R 70 -5.8 -4.24948 | opp_overlap 2726682 2726678 TGATTATATTCAAAA TTATTG TAT CAATAA ATATGTATCATTCCT USA300HOU_2582 2727781 - 2726915 - | hypothetical protein pyrD 2727999 - 2729063 + | dihydroorotate dehydrogenase 2 TERM 2869 2729260 - 2729246 - g 91 -4.2 -5.9218 | CAGATAATAAAAAAA CAGTAG CGA CTTCTG ACAACAAAGACACAC USA300HOU_2584 2729218 - 2729493 + | hypothetical protein USA300HOU_2585 2729643 - 2729530 - | hypothetical protein TERM 2870 2729609 - 2729570 - G 100 -11.7 -4.16814 | opp_overlap 2729570 CGATTATATAAATAA CCCGAGATTTTAGTA TGATTCATTT CACTAAAATCTCGGG TTTCTATTTGATAAT TERM 2871 2729570 - 2729609 + g 100 -11.6 -4.37506 | opp_overlap 2729570 CGATTATATAAATAA CCCGAGATTTTAGTATGA TTCA TTTCACTAAAATCTCGGG TTTCTATTTGATAAT USA300HOU_2586 2730401 - 2729679 - | hypothetical protein TERM 2872 2730678 - 2730700 + H 75 -4.2 -5.21709 | opp_overlap 2730678, overlap 2730680 ATTGACTTCAATTCA TCGTAAAAGT TAT ACTTTTGCCA TTTTTTAATGTAACA USA300HOU_2587 2730755 - 2731204 + | hypothetical protein TERM 2873 2731248 - 2731282 + T 77 -5.8 -4.91357 | opp_overlap 2731251, overlap 2731251 GCTTATGTTATTTAG CAAGGCAAGCCA CTCTCGATTCA TGGCTTGCCTTA TTTTATTGTATATTT TERM 2874 2731279 - 2731251 - T 70 -8.2 -3.18582 | opp_overlap 2731248 2731251 TATGTTATTTAGCAA GGCAAGCCAC TCTCGATTC ATGGCTTGCC TTATTTTATTGTATA TERM 2875 2731251 - 2731279 + T 79 -7.5 -4.51787 | opp_overlap 2731251, overlap 2731248 TATGTTATTTAGCAA GGCAAGCCA CTCTCGATTCA TGGCTTGCC TTATTTTATTGTATA USA300HOU_2588 2731872 - 2731285 - | transcriptional regulator USA300HOU_2589 2731948 - 2731850 - | hypothetical protein USA300HOU_2590 2732005 - 2733687 + | peptidase TERM 2876 2733754 - 2733787 + T 71 -9 -2.84865 | gap 1, opp_overlap 2733754, overlap 2733753 GTATAACAAGAGAAA GCCACACGCTTGG AATCTTAAA CCAAG-GTGTGGC CCTTTTTATTATTGA TERM 2877 2733787 - 2733754 - T 88 -9 -4.37544 | gap 1, opp_overlap 2733754 2733753 GTATAACAAGAGAAA GCCACACGCTTGG AATCTTAAA CCAAG-GTGTGGC CCTTTTTATTATTGA panD 2734187 - 2733816 - | aspartate alpha-decarboxylase panC 2735052 - 2734201 - | pantoate--beta-alanine ligase panB 2735863 - 2735045 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase panE2 2735936 - 2736796 + | 2-dehydropantoate 2-reductase TERM 2878 2736865 - 2736817 - f 77 -4.9 -5.1764 | gap 2 TATATAATATAAAAA GACCTTAACGATGCATTTAGAAC CACCT GTTCCTAAT--ATCGCTAAGGTC TTTTAATTATATTAG TERM 2879 2737823 - 2737780 - f 82 -5.4 -5.40072 | gap 1, overlap 2737781 TGCTTGCTAAAAAAA TGGACCTATCAGTGCCAC-GT GTT ACTGCAACACTAATAGATCCT CTTACCATTAAAATA TERM 2880 2737822 - 2737781 - f 80 -8.9 -3.83561 | gap 1, overlap 2737780 GCTTGCTAAAAAAAT GGACCTATCAGTGCCAC-GT GTT ACTGCAACACTAATAGATCC TCTTACCATTAAAAT TERM 2881 2739973 - 2739957 - g 73 -9.5 -2.88023 | opp_overlap 2739956 2739955, overlap 2739956 GCAGCATTATCAAAT CCATTTG GTA CAAATGG CGGTTTTATCGATAT USA300HOU_2595 2739510 - 2740958 + | APC family amino acid-polyamine-organocation transporter TERM 2882 2741009 - 2740972 - T 100 -10.1 -6.47325 | gap 1, opp_overlap 2740972 AAAAAATAAAAAAAA TCATTTCC-CATCTGATT AAC ATCCAGATGTGGAAATGA TTTTTTATTTTATAT TERM 2883 2740972 - 2741009 + T 100 -8.8 -5.8901 | gap 2, opp_overlap 2740972 AAAAAATAAAAAAAA TCATTTCC-CATCTG-AT TAAC ATCCAGATGTGGAAATGA TTTTTTATTTTATAT USA300HOU_2596 2742412 - 2741039 - | 4-aminobutyrate aminotransferase USA300HOU_2597 2742497 - 2742402 - | hypothetical protein USA300HOU_2598 2742634 - 2743050 + | hypothetical protein TERM 2884 2743112 - 2743126 + F 85 -7.2 -4.93296 | TCAAGGTTTATGACT TGAGAA ATG TTCTCA TTTTTATCATACTGG fdaB 2743173 - 2744063 + | fructose-1,6-bisphosphate aldolase TERM 2885 2744105 - 2744142 + T 100 -10.1 -5.27477 | gap 1, opp_overlap 2744105 TAAACTACTAAAAAG GACTCATACAT-GTGCTT TAA AGGCATTGTGTATGAGTC TTTTTTGATTAAAGT TERM 2886 2744193 - 2744233 + T 100 -19.3 -4.24204 | opp_overlap 2744193 GATTACGTAAAAAAA TCGGACAGCTGAAAAATCT TTA AGATTTCTCAGTTGTCCGA TTTTAAATATAGCTA TERM 2887 2744233 - 2744193 - T 100 -19.3 -5.48825 | opp_overlap 2744193 GATTACGTAAAAAAA TCGGACAGCTGAAAAATCT TTA AGATTTCTCAGTTGTCCGA TTTTAAATATAGCTA mqo2 2745752 - 2744256 - | malate:quinone oxidoreductase TERM 2888 2744349 - 2744359 + g 70 -4 -4.89562 | opp_overlap 2744337 TAATGATTCACCGTA TGAT GGA ATCA TTTTCTTAATTTTAG TERM 2889 2744531 - 2744564 + g 73 -8.3 -3.54129 | gap 1 GGATGAATCCTTTAC CGTGTTCAGGTGTATC TTT GATA-ACTTGTACACG TTTACCAGCAGTGTA TERM 2890 2744978 - 2744989 + g 84 -5.8 -5.32882 | CCAAATGTTTACTTT CAGG GATA CCTG TTTTTTGTAATAATG USA300HOU_2601 2746081 - 2746377 + | hypothetical protein TERM 2891 2746429 - 2746383 - T 100 -10.2 -4.61852 | opp_overlap 2746377 2746386, overlap 2746386 AACATCATAAATAAA CAAGCAGTCCAGTGCGTATCAT CAT ACCTTACGCATTGGACTGCTTT GCTATGTTTATTGAT TERM 2892 2746386 - 2746426 + T 100 -13.5 -3.99819 | opp_overlap 2746383 2746386, overlap 2746377 ATCATAAATAAACAA GCAGTCCAGTGCGTA TCATCATACCT TACGCATTGGACTGC TTTGCTATGTTTATT TERM 2893 2746426 - 2746386 - T 100 -11.9 -4.39652 | opp_overlap 2746386 2746377, overlap 2746383 ATCATAAATAAACAA GCAGTCCAGTGCGTATCAT CAT ACCTTACGCATTGGACTGC TTTGCTATGTTTATT acsA2 2748035 - 2746437 - | acetate--CoA ligase USA300HOU_2603 2748672 - 2748229 - | hypothetical protein TERM 2894 2748838 - 2748819 - R 72 -7.8 -3.66646 | opp_overlap 2748819 2748818 AATATTTCATGCAAA TGGGGGAC AGGA GTCGCCCA CTATTTTTGTGTCTT TERM 2895 2748922 - 2748893 - R 74 -7.9 -3.745 | overlap 2748891 TTAGTCATGAAAATA GCCGACAACTTCA TCTG TGAAATCACCGGC CTTTTATTTTAGCTA USA300HOU_2604 2749165 - 2748953 - | hypothetical protein TERM 2896 2749422 - 2749394 - R 100 -10.3 -5.28315 | opp_overlap 2749420 ATAAAACGCAAAAAA GCCTGGCACCAAT ACA ATAGATGCCAGAC TAAGAGTCTACTATA betA 2751152 - 2749443 - | choline dehydrogenase TERM 2897 2750726 - 2750746 + g 79 -3.9 -5.47914 | opp_overlap 2750731 GGCCTCTAAATTTAT CATAAGGCG CTG CACCGTATG TTTTTTCTAATTTTT TERM 2898 2751400 - 2751368 - R 75 -5.7 -4.83243 | gap 1, opp_overlap 2751367 2751368 CTTATACAAAACAAA GTGAGTGTC-TTGT GTTCTT ACAATGGCACTCAC CTTATCTAATTTTTA TERM 2899 2751368 - 2751400 + r 71 -8.6 -2.82138 | gap 1, opp_overlap 2751368, overlap 2751367 CTTATACAAAACAAA GTGAGTGTC-TTGTG TTCT TACAATGGCACTCAC CTTATCTAATTTTTA betB 2752903 - 2751413 - | betaine-aldehyde dehydrogenase TERM 2900 2752922 - 2752945 + H 70 -6.2 -4.12198 | ACAACCTCCGTTAAG TTTGTTAAAT TTTT ATTTAACGAA TTTTACAAACTTATG USA300HOU_2607 2752972 - 2753067 + | hypothetical protein USA300HOU_2608 2753153 - 2753719 + | hypothetical protein TERM 2901 2753788 - 2753821 + T 100 -12.7 -5.58522 | opp_overlap 2753788 GGTCCACGAAATAAA CGGTAATTTCTATCT CAAT AAATAGAAATTACCG TTTTTGTTTTATATG TERM 2902 2753821 - 2753788 - T 100 -14.9 -4.49556 | opp_overlap 2753788 GGTCCACGAAATAAA CGGTAATTTCTATCT CAAT AAATAGAAATTACCG TTTTTGTTTTATATG USA300HOU_2609 2754593 - 2753907 - | metallo-beta-lactamase betT 2756479 - 2754857 - | BCCT family betaine/carnitine/choline transporter TERM 2903 2754993 - 2754983 - G 70 -4 -4.86773 | TAAAATGATTAAAAA TGAT ATC ATCA TGAAAATAAAAATAA TERM 2904 2756740 - 2756758 + G 70 -4.6 -4.73677 | GCATTTAAGAATATT TATACGTT ATT AACGAATA TTTATTTATTGTAAA USA300HOU_2611 2756611 - 2756772 + | hypothetical protein USA300HOU_2612 2756898 - 2756788 - | hypothetical protein TERM 2905 2756987 - 2756956 - R 100 -14.6 -4.75174 | opp_overlap 2756959 TACCTAACCTAAAAA GAAGCCAAGGCAAC GAAT GTTACCTTGACTTC TAATACATATTCAAC nrdG 2757534 - 2756998 - | anaerobic ribonucleotide reductase small subunit nrdD 2759381 - 2757531 - | anaerobic ribonucleoside triphosphate reductase TERM 2906 2759040 - 2759065 + g 81 -9.1 -3.71672 | opp_overlap 2759046, overlap 2759046 ATTGGCTATAATTTG TACAAGCTGCG CTGA TGCAGTTTGTA TTGATTTTGGTGAAG citM 2760998 - 2759628 - | CitMHS family citrate-magnesium (Mg2+):proton (H+) citrate-calcium (Ca2+):proton (H+) symporter TERM 2907 2760902 - 2760886 - G 79 -9.5 -3.33815 | ATTGCCCCTAAGCAA GGTATGA TTG TCATACC TACAACTGGATTTAT TERM 2908 2761285 - 2761245 - R 86 -7.1 -5.26316 | gap 1 CTATTGCACAAAAAA TCTGGCTAAAGGTCGCTA TGATAG TAACGAC-TTCAACCAGA TTTCAATTTATCCAC USA300HOU_2616 2761415 - 2761320 - | hypothetical protein cysG 2762096 - 2761491 - | precorrin-2 dehydrogenase cysJ 2764039 - 2762159 - | sulfite reductase (NADPH) alpha subunit TERM 2909 2764396 - 2764356 - R 100 -9.9 -4.78848 | opp_overlap 2764357 2764388, overlap 2764357 TTTCTAAATATAAAA TGCCTCCTAATAACATACT ATT AGTACATCATTAAGAGGCT CTTGTGTTATTTGCA TERM 2910 2764395 - 2764357 - R 100 -13.4 -3.46586 | opp_overlap 2764357 2764388, overlap 2764356 TTCTAAATATAAAAT GCCTCCTAATAACATACT ATT AGTACATCATTAAGAGGC TCTTGTGTTATTTGC gpxA2 2764931 - 2764434 - | glutathione peroxidase USA300HOU_2620 2765739 - 2765626 - | hypothetical protein TERM 2911 2765703 - 2765713 + g 72 -2.6 -5.31855 | GCCATTCATCATTTT TAAT CAT ATTA TTTTTCTTATTGATA TERM 2912 2766253 - 2766229 - R 100 -10.1 -4.8048 | TTGTTATATTAAAAA CCGACAAGACA TTT TATCTTATCGG TTGAAATTTGTTATT USA300HOU_2621 2768355 - 2766355 - | ABC transporter ATP-binding protein USA300HOU_2622 2769107 - 2768352 - | ABC transporter ATP-binding protein TERM 2913 2768562 - 2768578 + g 74 -5.2 -4.66609 | opp_overlap 2768562 CTCTTGAAATAACAT CATCAA TGCCT TTGATG TTTTTGAATCAAGTG TERM 2914 2769193 - 2769154 - R 88 -3.2 -6.11229 | overlap 2769172 ATTAAAACAAAAAAA TACTAATAACATTT AAATTAGTAAAA AAATGTTACTAGTA TACTTACAATATTGA USA300HOU_2623 2770102 - 2769215 - | sensor histidine kinase USA300HOU_2624 2770778 - 2770113 - | response regulator USA300HOU_2625 2771004 - 2770804 - | hypothetical protein USA300HOU_2626 2771202 - 2772626 + | alkaline phosphatase TERM 2915 2772669 - 2772639 - T 95 -6.9 -5.75599 | opp_overlap 2772639 TAAAGCATAAAAAAA TTCCCGAGCAC TATAACAAG GTGTTCGGGAA TTTTTTATGGTTTAA TERM 2916 2772639 - 2772669 + T 100 -11.2 -5.42265 | opp_overlap 2772639 TAAAGCATAAAAAAA TTCCCGAGCACTAT AAC AAGGTGTTCGGGAA TTTTTTATGGTTTAA USA300HOU_2627 2772787 - 2772686 - | hypothetical protein USA300HOU_2628 2773364 - 2772909 - | MarR family transcriptional regulator USA300HOU_2629 2774370 - 2773609 - | tributyrin esterase EstA TERM 2917 2774472 - 2774453 - R 100 -10.8 -5.7946 | TTTTCAACAAAAAAA CCGAATAC AAAT GTATTCGG CCTAAAAAAGTATTT clfB 2777185 - 2774486 - | clumping factor B TERM 2918 2777475 - 2777502 + r 74 -9.2 -2.76313 | opp_overlap 2777475, overlap 2777472 CATGCTAGCAAAAAA GGCCTAACGTAT AAAT GTACGTTAGACC TCATGTTCAACTTAT TERM 2919 2777502 - 2777475 - R 100 -10.7 -5.15634 | opp_overlap 2777472 2777475 CATGCTAGCAAAAAA GGCCTAACGTA TAAATG TACGTTAGACC TCATGTTCAACTTAT USA300HOU_2631 2778239 - 2777535 - | transcriptional regulator arcC3 2779306 - 2778338 - | carbamate kinase arcD3 2780732 - 2779296 - | APC family amino acid-polyamine-organocation transporter arcB3 2781827 - 2780817 - | ornithine carbamoyltransferase arcA3 2783095 - 2781860 - | arginine deiminase TERM 2920 2783402 - 2783361 - R 100 -8.9 -5.60993 | CTTTCCATAAAAAAA CGCGTACACAAGTTAAT ATTTGGTA ACTAACTTGAGTACACG TGATACGAAACAAAT argR3 2783891 - 2783442 - | ArgR family transcription regulator TERM 2921 2784186 - 2784147 - R 79 -9.4 -3.38415 | opp_overlap 2784145, overlap 2784145 2784143 CTAATTACAAAGAGA GGGTATACCTACAAAG TCAATTAT CAATGTAGGTATACCC CATATATAAGCTGTA aur 2785787 - 2784258 - | zinc metalloproteinase aureolysin TERM 2922 2786194 - 2786160 - R 72 -2.9 -5.4833 | gap 1 TTATTTAATAAAAAA GACTAGAATGCG-GTA TCAC TCCTCACACTCTAGCC TTAATATGCCATTAT isaB 2786738 - 2786211 - | immunodominant antigen B USA300HOU_2639 2786981 - 2787454 + | hypothetical protein TERM 2923 2787501 - 2787547 + F 100 -11.2 -4.47786 | opp_overlap 2787504, overlap 2787504 TGCATAAATTCAGAA AAACAGCAGTGAGATATTTT TCTATTT GAAATATCTTACTGCTGTTC TTTATTTGCATAATT TERM 2924 2787544 - 2787504 - f 100 -10 -4.95896 | opp_overlap 2787501 2787504 ATAAATTCAGAAAAA CAGCAGTGAGATATTT TTCTATTTG AAATATCTTACTGCTG TTCTTTATTTGCATA TERM 2925 2787504 - 2787544 + F 100 -12.9 -4.34285 | opp_overlap 2787504, overlap 2787501 ATAAATTCAGAAAAA CAGCAGTGAGATATTTT TCTATTT GAAATATCTTACTGCTG TTCTTTATTTGCATA USA300HOU_2640 2787694 - 2789568 + | transcription antiterminator TERM 2926 2789563 - 2789593 + F 91 -4.9 -5.90981 | opp_overlap 2789563 2789566 TTTGAATACTTACAA GAATAATTGCC ACTAGTAAC GGTAATTATTC TTTTTTTTAGTATCG TERM 2927 2790893 - 2790850 - g 77 -9 -3.59738 | gap 1, opp_overlap 2790852 2790855 2790856, overlap 2790853 CATTATACCTGCAAA CATCATTGG-TGCAATGATTG CAT CAGTCATTGCAGCCATTGGTG GTGTCGGCGATAGAG TERM 2928 2790890 - 2790853 - g 72 -9.3 -2.62171 | gap 1, opp_overlap 2790852 2790855 2790856, overlap 2790850 TATACCTGCAAACAT CATTGG-TGCAATGATTG CAT CAGTCATTGCAGCCATTG GTGGTGTCGGCGATA TERM 2929 2790856 - 2790887 + G 89 -11.8 -3.24747 | gap 1, opp_overlap 2790853 2790850, overlap 2790852 2790855 ACCTGCAAACATCAT TGG-TGCAATGATTG CAT CAGTCATTGCAGCCA TTGGTGGTGTCGGCG USA300HOU_2641 2789645 - 2791597 + | PTS family fructose/mannitol (fru) porter component IIABC TERM 2930 2791829 - 2791802 - g 73 -8.6 -3.21395 | opp_overlap 2791794 2791800 2791797, overlap 2791800 ACTTTGGTCACAACA TCGTGAATTATT CGAT AATGATTCACGA GATAGTTTCCCTCTG manA2 2791611 - 2792549 + | mannose-6-phosphate isomerase TERM 2931 2792612 - 2792657 + T 82 -6.3 -5.24796 | opp_overlap 2792617, overlap 2792617 TCTGTCTAAAAACAT AAAAATCCACACATTAAGG AGCTATAA CCCTAATGTGTGGATTTAA TTTTTATTCTGTAAC TERM 2932 2792617 - 2792652 + T 100 -10.6 -4.44392 | opp_overlap 2792617, overlap 2792612 CTAAAAACATAAAAA TCCACACATTAAGG AGCTATAA CCCTAATGTGTGGA TTTAATTTTTATTCT TERM 2933 2792652 - 2792617 - T 100 -12.8 -5.36364 | opp_overlap 2792617 2792612 CTAAAAACATAAAAA TCCACACATTAAGG AGCTATAA CCCTAATGTGTGGA TTTAATTTTTATTCT USA300HOU_2643 2795642 - 2792661 - | bacteriophage infection protein USA300HOU_2644 2795853 - 2797712 + | N-acetylmuramoyl-L-alanine amidase TERM 2934 2797805 - 2797839 + T 85 -8.5 -4.56358 | opp_overlap 2797808, overlap 2797806 2797808 ATTTCTTATTCAATT AAACCCGAGGCATTC AGTTC GAACGCCTCGGGTCG TTTTATATAAATATA TERM 2935 2797806 - 2797838 + T 95 -12 -3.33092 | opp_overlap 2797808, overlap 2797805 2797808 TTTCTTATTCAATTA AACCCGAGGCATTC AGTTC GAACGCCTCGGGTC GTTTTATATAAATAT TERM 2936 2797808 - 2797836 + T 100 -14.6 -3.22496 | opp_overlap 2797808, overlap 2797806 2797805 TCTTATTCAATTAAA CCCGAGGCATTC AGTTC GAACGCCTCGGG TCGTTTTATATAAAT TERM 2937 2797836 - 2797808 - T 100 -17.5 -3.93288 | opp_overlap 2797808 2797806 2797805 TCTTATTCAATTAAA CCCGAGGCATTCA GTT CGAACGCCTCGGG TCGTTTTATATAAAT USA300HOU_2645 2798539 - 2797979 - | isochorismatase hydrolase sasF 2800620 - 2798707 - | LPXTG family cell wall surface anchor protein TERM 2938 2800010 - 2800029 + g 73 -7.2 -3.92005 | ACTGCTGGATCTTCC GATGTATC TTTC GATGCATC TTTCGATTTGTGTAT USA300HOU_2647 2802214 - 2800856 - | hypothetical protein USA300HOU_2648 2803715 - 2802207 - | glycosyltransferase secA2 2806123 - 2803733 - | preprotein translocase subunit SecA TERM 2939 2803998 - 2804012 + g 72 -5 -4.66833 | opp_overlap 2803987 2803998 2804000, overlap 2804000 AAAATATTATAATAA TATGCA CTT TGCATG TTTTTACGATTCAAA TERM 2940 2805800 - 2805789 - G 72 -5.8 -4.35044 | opp_overlap 2805788 2805785 2805789, overlap 2805774 GCATTTAAATATAAA GGCA TCGT TGCC GTTAATGTTTTACCT USA300HOU_2650 2807072 - 2806113 - | hypothetical protein USA300HOU_2651 2808621 - 2807050 - | hypothetical protein USA300HOU_2652 2810161 - 2808608 - | hypothetical protein secY2 2811383 - 2810172 - | preprotein translocase subunit SecY TERM 2941 2810570 - 2810587 + g 76 -6.3 -4.64676 | overlap 2810559 2810552 CAAATGTCAGCATTG GCATGTC ATCT GATATGC TTTTATTAAACATAG TERM 2942 2810799 - 2810787 - G 74 -6.3 -4.27463 | overlap 2810778 TAATAAGATAAACAA TGTGA TTA TCACA AGGATGATTAACAAC TERM 2943 2810898 - 2810922 + g 70 -3.6 -4.85599 | gap 1, opp_overlap 2810892 2810891, overlap 2810900 CATTACAATCGGCAT TGGTC-CTGCG ATGC CGTAGCGACTA TTTTTGTCAGCTAAC USA300HOU_2654 2818328 - 2811513 - | serine-threonine rich protein TERM 2944 2811769 - 2811787 + g 80 -10.4 -3.1247 | overlap 2811784 GATGTGCTCGTGCTG TGAGTATG ATG CATACTCA TTGAGTCTGACGGAT TERM 2945 2817414 - 2817403 - G 70 -4.4 -4.82678 | CCAGAAAAATGAAAA CTCT TATT AGAG TCAATACGTGTTCCT TERM 2946 2818845 - 2818809 - R 77 -4.6 -5.24449 | opp_overlap 2818809 TATAAAGCGAAAAAA TGCATCGCTACTAA GTTGAATGT TTAGTAAGGATGCA TTTAATTCACTAAAA USA300HOU_2655 2819565 - 2818873 - | hypothetical protein USA300HOU_2656 2819831 - 2820259 + | hypothetical protein USA300HOU_2657 2820243 - 2820548 + | hypothetical protein USA300HOU_2658 2820702 - 2821061 + | hypothetical protein USA300HOU_2659 2821757 - 2821146 - | hypothetical protein msrA3 2822312 - 2821836 - | methionine sulfoxide reductase A USA300HOU_2661 2822815 - 2822315 - | acetyltransferase TERM 2947 2823006 - 2823027 + r 70 -8.8 -2.71144 | opp_overlap 2822984 2823006, overlap 2823008 AAGCATACTCAAAAA GACTGGTA CATGTA TACCAGTC TAATTCGAAAAAATA TERM 2948 2823027 - 2823006 - R 100 -9.5 -4.72333 | opp_overlap 2823006 2823008, overlap 2822984 AAGCATACTCAAAAA GACTGGTAC ATGT ATACCAGTC TAATTCGAAAAAATA capC 2823817 - 2823050 - | capsular polysaccharide biosynthesis protein CapC capB 2824506 - 2823814 - | capsular polysaccharide biosynthesis protein CapB capA 2825185 - 2824523 - | capsular polysaccharide biosynthesis protein CapA TERM 2949 2825606 - 2825580 - R 100 -10.2 -4.3953 | opp_overlap 2825579 2825578 2825581, overlap 2825581 GTTAATGATAATAAA GCCCACACCTTT TAA AAAGATGTGGGT AATTTATATAATTTT TERM 2950 2825581 - 2825605 + r 91 -11.5 -3.0955 | opp_overlap 2825581 2825580, overlap 2825579 2825578 TTAATGATAATAAAG CCCACACCTTT TAA AAAGATGTGGG TAATTTATATAATTT TERM 2951 2825605 - 2825581 - R 100 -13.7 -3.22995 | opp_overlap 2825579 2825578 2825581, overlap 2825580 TTAATGATAATAAAG CCCACACCTTT TAA AAAGATGTGGG TAATTTATATAATTT TERM 2952 2825682 - 2825649 - R 100 -14.7 -5.66684 | opp_overlap 2825649 TAACTTATAAAAAAA GCGCCTATGTCATGA TTTA CCATCACATAGGCGC TTATCAATAAATTAT TERM 2953 2825649 - 2825682 + r 100 -14 -3.38118 | opp_overlap 2825649 TAACTTATAAAAAAA GCGCCTATGTCATG ATTTAC CATCACATAGGCGC TTATCAATAAATTAT icaR 2826593 - 2826033 - | ica operon transcriptional regulator R TERM 2954 2827071 - 2827051 - gH 70 -5.6 -4.27483 | opp_overlap 2827046, overlap 2827046 ATCTATAAAATCAAA GAAAATAA TGACT TTATTTTC GTCGATTTACAAGAA TERM 2955 2827440 - 2827460 + GH 81 -9.1 -3.67792 | opp_overlap 2827439 GATTACCGAAGATAT TGCAGTTTC TTG GAAATTGCA TTTACGTGGATATCG icaA 2826757 - 2827995 + | N-glycosyltransferase PgaC icaD 2827959 - 2828264 + | intercellular adhesion protein D icaB 2828261 - 2829133 + | intercellular adhesion protein B TERM 2956 2829243 - 2829270 + G 72 -5 -4.73388 | GGTGGATCCTTAGTG TTACAATTTTAC ATTC GTAATATTGTGA TTTTTGGTACACCTT icaC 2829120 - 2830172 + | intercellular adhesion protein C TERM 2957 2830243 - 2830193 - T 73 -5.5 -4.63184 | gap 1, opp_overlap 2830193 2830204, overlap 2830184 AAGCTATGTTAAAAA CACGCGGT-GGGCGAAATCAGT TTGAATTG ACTGACTTCGTTTTACCGCGTG TTTAATATTGTTATA TERM 2958 2830193 - 2830243 + T 93 -10.6 -4.02742 | gap 1, opp_overlap 2830184 2830193, overlap 2830204 AAGCTATGTTAAAAA CACGCGGT-GGGCGAAATCAGTT TGAATT GACTGACTTCGTTTTACCGCGTG TTTAATATTGTTATA USA300HOU_2670 2830521 - 2830363 - | hypothetical protein lip 2832664 - 2830619 - | triacylglycerol lipase TERM 2959 2830744 - 2830759 + g 72 -6.2 -4.38712 | opp_overlap 2830744 GTCCTACAAAGTCAA CATGAT CCCA ATCATG TTTTGTAGGCGTCAC TERM 2960 2832837 - 2832816 - R 75 -4.5 -5.08824 | opp_overlap 2832805 2832803 2832820, overlap 2832820 TTTGTATTTAAAAAA TATATTCTC CAAA GAGAATTTA AAGTGTATACGCTAA TERM 2961 2833308 - 2833265 - R 80 -6.3 -4.93296 | gap 1, opp_overlap 2833265 2833278, overlap 2833267 TGATTAGCATAAAAA TACATCCCATAAAGTTAG TTTTTTAGT CTAACTTT-CGGGATGCA TATCTTAGTTCTAAT TERM 2962 2833306 - 2833267 - R 72 -6.7 -4.08644 | gap 1, opp_overlap 2833265 2833278, overlap 2833265 ATTAGCATAAAAATA CATCCCATAAAGTTAG TTTTTTAGT CTAACTTT-CGGGATG CATATCTTAGTTCTA TERM 2963 2833399 - 2833375 - R 79 -10.3 -3.00022 | overlap 2833394 TTCAGGCTAGATATA TTTGTATTTAT AGT ATAAATACAAA GAATGTAAAGACAAC USA300HOU_2672 2833594 - 2833382 - | hypothetical protein hisIE 2834386 - 2833754 - | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein hisF 2835141 - 2834383 - | imidazoleglycerol-phosphate synthase subunit HisF hisA 2835842 - 2835138 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisH 2836413 - 2835835 - | imidazole glycerol phosphate synthase subunit HisH hisB 2836988 - 2836410 - | imidazoleglycerol-phosphate dehydratase hisC2 2837970 - 2836957 - | histidinol-phosphate transaminase hisD 2839242 - 2837986 - | histidinol dehydrogenase hisG 2839843 - 2839229 - | ATP phosphoribosyltransferase catalytic subunit hisZ 2840679 - 2839861 - | ATP phosphoribosyltransferase regulatory subunit TERM 2964 2840329 - 2840317 - G 81 -7.7 -4.31837 | opp_overlap 2840317 AATAAACTGAATAAA GAGCT TTA AGCTC TGTTGCACATTCGCT USA300HOU_2682 2840870 - 2840977 + | hypothetical protein USA300HOU_2683 2842108 - 2840984 - | hypothetical protein USA300HOU_2684 2842723 - 2842226 - | hypothetical protein USA300HOU_2685 2843603 - 2842770 - | cobalt ABC transporter USA300HOU_2686 2845312 - 2843600 - | ABC transporter ATP-binding protein USA300HOU_2687 2845919 - 2845365 - | hypothetical protein USA300HOU_2688 2846796 - 2845948 - | hypothetical protein TERM 2965 2846620 - 2846604 - G 73 -4.4 -4.99035 | gap 1, opp_overlap 2846604 CCACTGATACAAAAA CTGTGCC TTTA GGC-CAG TATTTTACAGTTTGA TERM 2966 2847156 - 2847140 - H 71 -2.3 -5.38249 | overlap 2847142 ATCAAGTATAAAAAA TATATCT AAG AGATAAA AATATGGAGGTTTTA USA300HOU_2689 2847176 - 2847691 + | hypothetical protein TERM 2967 2847733 - 2847765 + T 100 -11.5 -5.00138 | opp_overlap 2847733 AATATATATACGAAA TGCCAACTATATC ATCCCTA GGTATAGTTGGCA TTTTTCGTTTAACTC TERM 2968 2847765 - 2847733 - T 86 -9.3 -3.92869 | opp_overlap 2847733 AATATATATACGAAA TGCCAACTATATC ATCCCTA GGTATAGTTGGCA TTTTTCGTTTAACTC USA300HOU_2690 2848811 - 2847840 - | gluconolactonase TERM 2969 2848990 - 2849001 + H 73 -5.8 -4.66535 | opp_overlap 2848989 2848990 GACGTAGACAAATAT GCGT ATTG ACGC TTTATTTTAAAAATT TERM 2970 2849057 - 2849070 + G 74 -5.3 -4.74285 | AGGAGATTAACCTAT GAACT ATCA AGTTC TTTTATATTATAAAT USA300HOU_2691 2849055 - 2850011 + | hypothetical protein pcp 2850163 - 2850801 + | pyrrolidone-carboxylate peptidase TERM 2971 2850865 - 2850817 - T 76 -7.8 -3.9398 | gap 2, opp_overlap 2850813 2850827 2850834 TTATAAGTGCACAAA CAAAAGCACCCTAATTTGTTAG TTTAAGT CTAACT--TTAGGGTGCTTTTG GATGATTGGTATACA USA300HOU_2693 2851687 - 2850920 - | hypothetical protein TERM 2972 2851270 - 2851281 + g 71 -3 -5.14563 | CATAAGTCACATTTA TAAC ATAC GTTA TTTTTTGGTCACCAA USA300HOU_2694 2852015 - 2851677 - | PadR family transcriptional regulator USA300HOU_2695 2852182 - 2852646 + | hypothetical protein TERM 2973 2852661 - 2852683 + F 95 -6.3 -5.85425 | opp_overlap 2852651 2852662, overlap 2852662 AATATGTGCTTATTA ACCGTTAAC AACAC GTTAACGGG TTTTTTATTTGTTTA TERM 2974 2852682 - 2852662 - f 81 -10.5 -3.14683 | opp_overlap 2852661 2852662, overlap 2852651 ATATGTGCTTATTAA CCGTTAACA ACA CGTTAACGG GTTTTTTATTTGTTT TERM 2975 2852662 - 2852682 + F 91 -9.8 -4.07595 | opp_overlap 2852651 2852662, overlap 2852661 ATATGTGCTTATTAA CCGTTAAC AACAC GTTAACGG GTTTTTTATTTGTTT USA300HOU_2696 2852884 - 2854302 + | DASS family divalent anion:sodium (Na+) symporter TERM 2976 2854316 - 2854342 + T 100 -10.9 -5.08367 | opp_overlap 2854316 AAAATATTTAAATTA GCGCTCGAATC TCATT GATTTGGGCGC TTTTTAATTTGTATT TERM 2977 2854590 - 2854547 - T 72 -2.7 -5.39721 | gap 1 TCATCATACAAAAAA CACCTTCGTTTAAATTCA TTTTAATTG CGAATTCA-ACGAAAGTG CCTTATTTCATATTT rarD 2855623 - 2854715 - | DMT superfamily drug/metabolite transporter USA300HOU_2698 2855848 - 2856423 + | hypothetical protein USA300HOU_2699 2856588 - 2857604 + | nickel-cobalt transporter USA300HOU_2700 2857764 - 2857669 - | hypothetical protein TERM 2978 2858106 - 2858096 - g 79 -5.4 -5.20333 | opp_overlap 2858096, overlap 2858079 2858100 TATTTACAACAAAAA GGAT TTA ATCC TGAATTAATGTCAGC USA300HOU_2701 2857847 - 2858641 + | arylamine N-acetyltransferase TERM 2979 2858758 - 2858713 - T 71 -7.9 -3.5241 | gap 1, opp_overlap 2858757, overlap 2858722 TATGCTTCATAAACA CAACAAAAAGGATATGACACAA ACT TCATGTCACACCCTTCTT-TTG AACCGCTTCATTTTA TERM 2980 2858750 - 2858722 - T 86 -7.5 -5.33331 | overlap 2858713 TAAACACAACAAAAA GGATATGACACAA ACT TCATGTCACACCC TTCTTTTGAACCGCT USA300HOU_2702 2859287 - 2858775 - | hypothetical protein USA300HOU_2703 2859570 - 2860328 + | ABC transporter ATP-binding protein USA300HOU_2704 2860318 - 2862198 + | ABC transporter ATP-binding protein USA300HOU_2705 2862291 - 2862482 + | hypothetical protein USA300HOU_2706 2862494 - 2863030 + | integrase TERM 2981 2863070 - 2863045 - T 77 -4.7 -5.30686 | gap 1, opp_overlap 2863040 2863045 AAGATTTATAAAAAA GCCGTTGGTCTC TTC GAAA-CTACGGC TTTTCTCTGTGCTAT USA300HOU_2707 2863587 - 2863090 - | hypothetical protein USA300HOU_2708 2863666 - 2864016 + | integrase USA300HOU_2709 2864045 - 2864236 + | hypothetical protein TERM 2982 2864295 - 2864317 + T 100 -9.9 -5.31456 | opp_overlap 2864295 2864298 AGATTTTAATATCAA CAAGTAGCG TTTAT CGCTGCTTG TTTTTTATGGATTGC TERM 2983 2864446 - 2864462 + T 70 -5.3 -4.64861 | ACGTTTCTAAGGTTT TTAAAAA TCT TTTTTAA TTTATTTTCAAAAAA TERM 2984 2864865 - 2864845 - T 100 -9.1 -4.73682 | opp_overlap 2864844 2864845 TCTTACAACATAAAA CGACTCATT ATA AATGAATCG CTTTGATTACCAACA TERM 2985 2864873 - 2864901 + T 100 -14.1 -5.70829 | opp_overlap 2864879 ATGAATCGCTTTGAT TACCAACAAGGTT CTA AATCTTGTTGGTA TTTTTTTATGCTATT TERM 2986 2865121 - 2865135 + T 76 -2.8 -5.52909 | AATTCGATCGTAGTT GTCCAT TTT ATGCAC TTTTTTTAAATCTTC USA300HOU_2710 2866180 - 2865785 - | hypothetical protein USA300HOU_2711 2866601 - 2866248 - | hypothetical protein TERM 2987 2866865 - 2866853 - R 90 -7.7 -5.1925 | opp_overlap 2866852 CTAGAATTGAAAAAA GCTTG TTA CAAGC GCATTTTCGTTCAGT TERM 2988 2866987 - 2867015 + r 72 -5.4 -4.6955 | opp_overlap 2866987, overlap 2866982 TAAAACAAAAAAAAA GACAAAGCTG TTATGATCT TAGCTTTGTC TTTTATGTGTTAGTC TERM 2989 2867015 - 2866987 - R 100 -4.7 -6.55664 | opp_overlap 2866987 2866982 TAAAACAAAAAAAAA GACAAAGCT GTTATGATCTT AGCTTTGTC TTTTATGTGTTAGTC USA300HOU_2712 2867893 - 2867054 - | transcriptional regulator gidB 2868655 - 2867936 - | glucose-inhibited division protein B gidA 2870532 - 2868655 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 2990 2870574 - 2870587 + r 73 -8.1 -3.47928 | overlap 2870565 2870572 TACTAGCCTTCTTAA GACGG TATT CCGTC TATTTCAATTACTAT USA300HOU_2715 2871978 - 2870599 - | tRNA modification GTPase TrmE rnpA 2872470 - 2872117 - | ribonuclease P TERM 2991 2872590 - 2872569 - R 100 -11.7 -6.02546 | opp_overlap 2872569 TTAAACGAAAAAAAA GATCACTGA TGAG TCAGTGATC TTATGCAGATAAAAC TERM 2992 2872569 - 2872590 + r 95 -11.7 -3.31144 | opp_overlap 2872569 TTAAACGAAAAAAAA GATCACTGA TGAG TCAGTGATC TTATGCAGATAAAAC USA300HOU_2717 2872728 - 2872591 - | 50S ribosomal protein L34