TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.64566 %AT, 2141182 nt, 12082 terms. Intergenic: 0.694033 %AT, H2T: 286879 nt, 2318 terms; T2T: 72548 nt, 1844 terms; H2H: 87397 nt, 1294 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|224475494|ref|NC_012121.1| Staphylococcus carnosus subsp. carnosus TM300, complete genome (length 2566424) rpmH 87 - 224 + | 50S ribosomal protein L34 TERM 1 225 - 246 + F 100 -9.5 -6.02546 | opp_overlap 225 228 GTTTTATCAGCATAA GATCACTGA CCTA TCAGTGGTC TTTTTTTTGCTTTAA rnpA 376 - 723 + | putative ribonuclease P protein component trmE 853 - 2235 + | putative tRNA modification GTPase TrmE gidA 2251 - 4125 + | glucose inhibited division protein A gidB 4126 - 4848 + | glucose inhibited division protein B TERM 2 5437 - 5423 - g 81 -4.3 -5.34381 | overlap 5417 AAAGTGAAACAAAAA CTTTC TGAAG GAAAG ATAACAGAACGCCAC Sca_0006 4895 - 5737 + | putative DNA-binding protein TERM 3 5740 - 5763 + F 100 -8.9 -5.57054 | opp_overlap 5735 5740 TTATAAACGATAAAA GTCATTCGC TACTGT GCGAGTGAC TTTTTTTAAATTGTT TERM 4 5763 - 5740 - f 78 -6.7 -4.64846 | opp_overlap 5740, overlap 5735 TTATAAACGATAAAA GTCATTCGC TACTGT GCGAGTGAC TTTTTTTAAATTGTT TERM 5 6023 - 6013 - g 78 -4 -5.35222 | AAAACTGAGAAAAAA GAAT CAA ATTC AACATCAAGCTCAAC Sca_0007 5872 - 6801 + | hypothetical protein Sca_0008 6816 - 6989 + | hypothetical protein TERM 6 7042 - 7024 - f 71 -2.4 -5.37345 | opp_overlap 7014, overlap 7026 CCGAATCAGAAAAAA CATCTGAT AAT ATCAAAAG CTTTAAACAACTCAC Sca_0009 7083 - 7754 + | hypothetical protein TERM 7 7766 - 7789 + F 71 -3.1 -5.33785 | overlap 7786 ATAATATTTATAAAA CTCTGCAGC TTATAT GTTGTGGAG TTTTTTATGCTCCTT TERM 8 7991 - 8021 + F 100 -9.9 -5.40072 | GCATATACATAGTAG GCTATATGTTGCT TATAC AGTGACATATAGC TTTTTTTGAAAAAAG Sca_0010 8074 - 9234 + | putative aminotransferase TERM 9 9369 - 9338 - T 71 -2.2 -5.45652 | overlap 9341 9342 AGGTGTAATAAAAAA CATTCAGACGTCCT GGTA AAGAAGACTGAGTG TAAAAATGTTAGGCG TERM 10 9420 - 9456 + T 100 -10.4 -4.55908 | opp_overlap 9423, overlap 9423 ACCTTAGGCTTATTG AAATAGTCGATTATGT TGGGT GCATAATCGACTATTA TTTATTGTCTTTCTT TERM 11 9423 - 9453 + T 100 -12.1 -4.34559 | opp_overlap 9423, overlap 9420 TTAGGCTTATTGAAA TAGTCGATTATGT TGGGT GCATAATCGACTA TTATTTATTGTCTTT TERM 12 9453 - 9423 - T 93 -11.4 -3.65351 | opp_overlap 9423 9420 TTAGGCTTATTGAAA TAGTCGATTATG TTGGGTG CATAATCGACTA TTATTTATTGTCTTT TERM 13 9545 - 9586 + T 100 -14.7 -4.41353 | opp_overlap 9548, overlap 9548 AAAGCACAACGAAAA AAATGAGAGGTGAGACAAC AAAA GTTGTTTCATCTCTCATTA TTTTACTATATATAA TERM 14 9583 - 9548 - T 100 -12 -5.68023 | opp_overlap 9545 9548 GCACAACGAAAAAAA TGAGAGGTGAGACAAC AAAA GTTGTTTCATCTCTCA TTATTTTACTATATA TERM 15 9548 - 9583 + T 100 -16.4 -4.30909 | opp_overlap 9548, overlap 9545 GCACAACGAAAAAAA TGAGAGGTGAGACAAC AAAA GTTGTTTCATCTCTCA TTATTTTACTATATA TERM 16 9690 - 9632 - T 74 -6.8 -4.2757 | gap 1, opp_overlap 9633 9634, overlap 9634 TTCAAAAAAATAGAA CACTGGATATACGGCTACAACACACAC GGGGTG GTGGGAGGTGCTGCCATATATCCAGT- GTCTTCTTTTTATAA TERM 17 9689 - 9634 - T 95 -11.9 -3.70983 | opp_overlap 9634 9633, overlap 9632 CAAAAAAATAGAACA CTGGATATACGGCTACAACACACAC GGGGTG GTGGGAGGTGCTGCCATATATCCAG TGTCTTCTTTTTATA TERM 18 9834 - 9811 - T 76 -6.9 -4.36586 | AGATAATGAAAAGAA TGTTCTTAA TCGGGT TTAAGAACA ATGGCGATTCATGCC Sca_0011 10692 - 9943 - | conserved hypothetical protein, putative cyclase metE 13114 - 10871 - | 5-methyltetrahydropteroyltriglutamate-homocystei ne methyltransferase TERM 19 11787 - 11804 + g 73 -5.6 -4.64766 | AATTGGTTGTACTCT TCATCG CTGATA CGATGA TTTTTCCAATCTGCA metH 14952 - 13111 - | putative homocysteine methyltransferase TERM 20 14725 - 14745 + gr 73 -5.4 -4.64657 | overlap 14739 GTCTTTCACTTGATG CTCCAATC CGAAT GTTTGGAG TTTTTCAAAGTTTGC metC 16078 - 14906 - | putative cystathionine beta-lyase TERM 21 16209 - 16162 - H 100 -18.7 -5.55664 | opp_overlap 16137 16162, overlap 16137 16203 TGACCACGAAAAAAA GCTTCCGTCCTTTAAACCCGA AATGAA TCGGATGTAAAGGACGAAAGC TTGTGCTTCGCGGTA TERM 22 16162 - 16209 + H 100 -14.3 -3.51329 | opp_overlap 16137 16162 16203, overlap 16137 TGACCACGAAAAAAA GCTTCCGTCCTTTAAACCCGA AATGAA TCGGATGTAAAGGACGAAAGC TTGTGCTTCGCGGTA TERM 23 16702 - 16725 + H 85 -2.6 -5.96894 | overlap 16703 TACAGCACCAAGCGA TTTAAGAAAT TTAA ATTTTTTGAA TTTTTTTATTTCAGT Sca_0015 16830 - 17666 + | putative DNA-binding protein Sca_0016 17755 - 18654 + | putative membrane protein with mechanosensitive ion channel domain TERM 24 18731 - 18718 - g 73 -2.3 -5.37593 | opp_overlap 18729, overlap 18719 GTGGAAATGAAAAAA GCGCA TGCT TGCGG TGAAAATCGTTTTAA Sca_0017 18673 - 18885 + | hypothetical protein TERM 25 18906 - 18934 + G 79 -10.3 -3.24411 | overlap 18902 TTAACAGCTGGTATC GTGGGCTTGCCGA ACG TCGGAAAGTCTAC TCTATTTAACGCAAT Sca_0018 18885 - 19982 + | putative GTP-binding protein TERM 26 20043 - 19993 - T 100 -13.2 -3.41807 | opp_overlap 19993 20001, overlap 20001 TGTAAATAAAGCTAA TAAATAAACGGAAAAGTTC-TTAG ATTAA CTAAAGAACTTTTCCGTTT-TTTA TATTATTTTAAATTT TERM 27 19993 - 20043 + T 100 -13.2 -3.73132 | opp_overlap 19993 20001, overlap 20001 TGTAAATAAAGCTAA TAAATAAACGGAAAAGTTC-TTAG ATTAA CTAAAGAACTTTTCCGTTT-TTTA TATTATTTTAAATTT TERM 28 20001 - 20036 + T 100 -12.9 -5.57729 | gap 1, opp_overlap 19993 20001, overlap 19993 AAGCTAATAAATAAA CGGAAAAGTTC-TTAG ATTAA CTAAAGAACTTTTCCG TTTTTTATATTATTT TERM 29 20036 - 20001 - T 100 -12.9 -4.70117 | gap 1, opp_overlap 20001 19993, overlap 19993 AAGCTAATAAATAAA CGGAAAAGTTC-TTAG ATTAA CTAAAGAACTTTTCCG TTTTTTATATTATTT ribD 20761 - 20051 - | putative 5-amino-6-(5-phosphoribosylamino)uracil reductase TERM 30 20901 - 20936 + H 100 -14.2 -4.82154 | opp_overlap 20901 CATATATGTTAAAAA GAGTTTGACTAGACTG AGGG CGGTCTAATCAAACTC TTTTTAGTATGAATT TERM 31 20936 - 20901 - H 100 -14.2 -4.65838 | opp_overlap 20901 CATATATGTTAAAAA GAGTTTGACTAGACTG AGGG CGGTCTAATCAAACTC TTTTTAGTATGAATT TERM 32 21245 - 21258 + G 76 -3.1 -5.37593 | GTAGGACTTGCATCT GTTCT CTTT GGAAC TTTTTTAATTTACGC Sca_0020 21143 - 25450 + | putative surface associated protein with similarity to proteases Sca_0021 26431 - 25664 - | putative oxidoreductase argF 27637 - 26633 - | putative ornithine carbamoyltransferase TERM 33 27272 - 27256 - G 78 -10.9 -2.73124 | opp_overlap 27254 27251, overlap 27255 CTTCATCTGTTAAAC CGTTCCA TAC TGGAACG CCTGATTCTTTCGCC pemK 28228 - 27878 - | putative cell growth inhibitor, pemK-like protein pemI 28479 - 28222 - | hypothetical protein with similarity to PemI-like protein suppressor of ChpA TERM 34 28878 - 28856 - g 86 -8.5 -4.51765 | overlap 28871 GAGAAGGCAAAGAAA GCACCTGAA AAAGA TTCAGATGC TGAGAATAATAAAGA TERM 35 29138 - 29123 - g 78 -5.4 -4.89521 | ACACCTGAAACAAAA CACCCT ACAA AAGGTG TTCAACCATATGGTA TERM 36 29193 - 29207 + G 73 -8.6 -3.30701 | opp_overlap 29192 ACATGTTGGAAAATG CTTCGA AAA TCGAAG TTGAATTTGATAAGG nuc 28637 - 29671 + | thermonuclease precursor rpsF 29812 - 30108 + | 30S ribosomal protein S6 TERM 37 30615 - 30594 - g 76 -9.5 -3.38291 | overlap 30579 TGGACAATCTGATAA TCCATTTGC AAAT GCAAACGGA CCGATTGATATCAGT ssb 30130 - 30651 + | putative single-strand DNA-binding protein TERM 38 30770 - 30750 - g 100 -9.1 -5.00616 | CGTCGTCGTAAAAAA GTTTGCTAT TTC ACAGCAAAC GGTATTACACACATC TERM 39 30847 - 30828 - g 73 -8.6 -3.32844 | opp_overlap 30828 CGTTTTATCTCAGAA CGCGGTAA AATT TTACCACG TCGTGTAACTGGCAC rpsR 30708 - 30950 + | 30S ribosomal protein S18 TERM 40 30995 - 30969 - f 77 -8.7 -3.62384 | gap 1, opp_overlap 30970, overlap 30958 30970 AGAACTTATAGATAA TCCCCGTAG-GC ATAG GCTCTACGGGGT TTCTTTATGTCTAAA TERM 41 30970 - 30994 + F 100 -12.2 -4.65722 | gap 1, opp_overlap 30969 30958 30970 GAACTTATAGATAAT CCCCGTAG-GC ATAG GCTCTACGGGG TTTCTTTATGTCTAA TERM 42 30994 - 30970 - f 100 -12.2 -2.76708 | gap 1, opp_overlap 30970, overlap 30969 30958 GAACTTATAGATAAT CCCCGTAG-GC ATAG GCTCTACGGGG TTTCTTTATGTCTAA Sca_0029 31246 - 31464 + | hypothetical protein TERM 43 31472 - 31492 + F 100 -10.5 -5.48213 | opp_overlap 31474 GGAAGTAATTGGAAG CACTCACTT TGT AAGTGGGTG TTTTTATTTTGCCTA TERM 44 31537 - 31517 - f 74 -6.9 -4.32046 | overlap 31520 31526 TGCCTAAAAATTAAA GTATAGAAG TAT CTTCTAGAC AAGTATTCTCAAAAC Sca_0030 31751 - 32074 + | conserved hypothetical protein with monooxygenase domain TERM 45 32084 - 32104 + F 70 -5.4 -4.67641 | CAGTAGAACGATGAA GCGGTTGT GCATA ACAGCTGC TTTTAATTTTCAAGT TERM 46 32149 - 32128 - f 78 -3 -5.53288 | opp_overlap 32128, overlap 32131 TTCAAGTCAAAAAAA TATGCTCT ATAGCG AGAGCGTA TTTACAATCATATTT Sca_0031 32535 - 33128 + | hypothetical protein TERM 47 33135 - 33170 + F 100 -9.1 -5.37043 | opp_overlap 33141 33142, overlap 33142 TTATTATAATTTGTT TTATAAGGCTGAGCG CAATGA CGCTCGGCTTTTTAA TTTTTTCTATAAAAT TERM 48 33142 - 33163 + F 100 -9.4 -5.27769 | opp_overlap 33142 33141, overlap 33135 AATTTGTTTTATAAG GCTGAGCG CAATGA CGCTCGGC TTTTTAATTTTTTCT gpm3 33360 - 33953 + | putative phosphoglycerate mutase TERM 49 33960 - 33990 + T 100 -13.4 -4.57533 | opp_overlap 33960 ATCTATTAAAGGAAA GGCAGGTTTACC AGCTAAA GGTAAGCCTGCC TTTTGTAATGTTATT TERM 50 33990 - 33960 - T 100 -11.2 -4.10953 | opp_overlap 33960 ATCTATTAAAGGAAA GGCAGGTTTACC AGCTAAA GGTAAGCCTGCC TTTTGTAATGTTATT dapE 35167 - 34001 - | putative succinyl-diaminopimelate desuccinylase ydfG 35442 - 35882 + | hypothetical protein TERM 51 35889 - 35929 + T 79 -5.5 -5.05116 | opp_overlap 35892, overlap 35892 AATGTATAAATAACG AAAGACCCACTTCAC TGAATTTTGGT GTGAAGCGGGTCTTA TTTTATTATTTATCA TERM 52 35926 - 35892 - T 88 -9.4 -4.18044 | opp_overlap 35889 35892 GTATAAATAACGAAA GACCCACTTCAC TGAATTTTGGT GTGAAGCGGGTC TTATTTTATTATTTA TERM 53 35892 - 35926 + T 81 -7.2 -4.57912 | opp_overlap 35892, overlap 35889 GTATAAATAACGAAA GACCCACTTCAC TGAATTTTGGT GTGAAGCGGGTC TTATTTTATTATTTA Sca_0035 36558 - 35935 - | putative lipoprotein Sca_0036 37261 - 36632 - | putative phosphatase with similarity to PAP2 family protein Sca_0037 37565 - 37684 + | hypothetical protein TERM 54 37799 - 37768 - T 100 -11 -5.61824 | opp_overlap 37765 37771, overlap 37771 TAAAATGCAAAAAAA GAACGGAATCCTAA TTGT TTAGGATCCCGTTT CATCTTTTCCGTAGT TERM 55 37796 - 37771 - T 100 -12.7 -4.83715 | opp_overlap 37765 37771, overlap 37768 AATGCAAAAAAAGAA CGGAATCCTAA TTGT TTAGGATCCCG TTTCATCTTTTCCGT TERM 56 37771 - 37796 + T 95 -10.5 -4.0828 | opp_overlap 37771 37768, overlap 37765 AATGCAAAAAAAGAA CGGAATCCTAA TTGT TTAGGATCCCG TTTCATCTTTTCCGT ahpF 39359 - 37836 - | alkyl hydroperoxide reductase subunit F ahpC 39945 - 39376 - | alkyl hydroperoxide reductase subunit C Sca_0040 41130 - 40351 - | putative 2-keto-4-pentenoate hydratase TERM 57 40713 - 40743 + g 73 -5.5 -4.67635 | gap 1, opp_overlap 40713, overlap 40714 ACCAGTCGATATAAC GT-GCATCTGGTAT TTCG ATACCTGGTGCGAC TTTTATACTTTTCAA Sca_0041 41290 - 42045 + | nitroreductase family protein TERM 58 42058 - 42089 + T 100 -8.1 -5.7946 | gap 1, opp_overlap 42058 TAAGCCGTATTAAAT GGGCAGGGATTCTC TTTAT GAGAA-CCTTGCTC TTTTTTTATTAAAAA TERM 59 42139 - 42106 - T 100 -11.9 -5.14563 | gap 1, opp_overlap 42106 TTTTTTATTAAAAAA GCACTGACAATGAGAT AGA AACTCAT-GTCAGTGC TTTAGGTTATCGATA TERM 60 42106 - 42139 + T 95 -11.9 -3.81339 | gap 1, opp_overlap 42106 TTTTTTATTAAAAAA GCACTGACAATGAGAT AGA AACTCAT-GTCAGTGC TTTAGGTTATCGATA Sca_0042 43480 - 42155 - | putative sodium:dicarboxylate symporter TERM 61 43463 - 43447 - G 84 -8 -4.59853 | overlap 43461 CTAATGCGGCAAAAA CGCGTT TAGAG AACGCG ACATGTTTTTTCGCC TERM 62 43829 - 43804 - R 100 -9.1 -5.71712 | opp_overlap 43804 CTGTATATAAAAAAA CATCGATCCTA ATAA CAGAATCGATG TTTGATAATTTTTAA Sca_0043 44816 - 43845 - | putative DNA-binding protein TERM 63 44092 - 44117 + g 72 -4 -4.98461 | GCTGATGCTTCAGGT TTAGCTTCTG ATTGAG CAGTAGCTGA TTTGTTTTCTTCTTT TERM 64 44616 - 44628 + g 74 -4.1 -5.21683 | TAATTCTTCAAAAGC CAGTT CAT AGCTG TTTGTTTTTTTAACT Sca_0044 45245 - 44934 - | conserved hypothetical protein (fragment) Sca_0045 45599 - 45327 - | conserved hypothetical protein (fragment) TERM 65 45668 - 45686 + r 71 -7.4 -3.77607 | opp_overlap 45668 TTAGAAATAAAAAAA TCGACAGT CAA ACTGCCGA TTTCATACCCTTATT TERM 66 45686 - 45668 - R 100 -9.6 -6.02919 | opp_overlap 45668 TTAGAAATAAAAAAA TCGACAGT CAA ACTGCCGA TTTCATACCCTTATT Sca_0046 46087 - 45707 - | hypothetical protein TERM 67 46661 - 46644 - H 70 -5.6 -4.2558 | opp_overlap 46643 46646 GAGCTGGTATGAAAA GACAGT GTGATA ACTGTC GGTTTATATGGAGAT xprT 46819 - 47397 + | putative xanthine phosphoribosyltransferase pbuX 47399 - 48667 + | putative xanthine permease guaB 48701 - 50167 + | putative inositol-monophosphate dehydrogenase TERM 68 50348 - 50327 - g 70 -2.9 -5.09521 | opp_overlap 50327 TGAAGAAATTAAAAA GATGAATCC AAAA GGTATCATC TTATCTGGTGGTCCG TERM 69 50589 - 50569 - g 70 -5.4 -4.45738 | TACCTGAAGAACAAA CAGTATGG ATGAG CCATTCTG ATAAAGTGATTGAAA guaA 50184 - 51725 + | putative GMP synthase TERM 70 51745 - 51778 + F 72 -4 -5.15682 | gap 1, opp_overlap 51745 ATAACTGATATATGA GGCTAG-AAACGT TGATATAAT GCGTTTTCTAGCC TTTTCTTTATGTTTT Sca_0051 51990 - 52766 + | glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein TERM 71 53050 - 53039 - g 73 -2.2 -5.27335 | opp_overlap 53044 GTTCGGAAATAAAAA CAGG TCAT CCTA TGGAAGGTATTTTAT Sca_0052 52903 - 53454 + | hypothetical protein mutT 53898 - 53494 - | mutT/nudix family protein TERM 72 54225 - 54211 - g 73 -2.1 -5.28315 | opp_overlap 54215, overlap 54215 AGAAAACTTAAAAAA CTTAC TTGAC GCAAG TTCATATTATAAAGC Sca_0054 54059 - 54574 + | hypothetical protein TERM 73 54668 - 54708 + F 74 -6.3 -4.43864 | gap 1, opp_overlap 54668 ATAGAATGAAGATAA GCAGTCTTTCT-CATGCA CATTGC TGCATATAGGAAGGCTGC TTTTAATATATATTT TERM 74 55245 - 55267 + G 74 -2.7 -5.29445 | overlap 55255 TTACGACATAAAGAT CGTTCAATT AGAAA AATTGCGCG TTTTTCTTCTTACGA Sca_0056 54861 - 56759 + | putative glycosyl transferase TERM 75 56852 - 56794 - T 100 -20.8 -4.31692 | opp_overlap 56797 56800 56817 AACCGATTATGAAAA TAATAAGCTCCTTATAAAGTTATCACTT CTT AAGTGTTTTCTTTATAAGGAGCTTATTA GTATAGCCTTGTTCT TERM 76 56797 - 56849 + T 100 -18.1 -3.28261 | opp_overlap 56794, overlap 56800 56817 CGATTATGAAAATAA TAAGCTCCTTATAAAGTTATCACTT CTT AAGTGTTTTCTTTATAAGGAGCTTA TTAGTATAGCCTTGT TERM 77 56800 - 56846 + T 100 -15.4 -3.77588 | opp_overlap 56794, overlap 56797 56817 TTATGAAAATAATAA GCTCCTTATAAAGTTATCACTT CTT AAGTGTTTTCTTTATAAGGAGC TTATTAGTATAGCCT TERM 78 56817 - 56829 + T 80 -6.3 -4.99043 | opp_overlap 56794, overlap 56800 56797 TCCTTATAAAGTTAT CACTT CTT AAGTG TTTTCTTTATAAGGA vba 58462 - 56876 - | ABC transporter ATP-binding protein (antibiotic resistance) cysH 58773 - 59498 + | putative phosphoadenosine phosphosulfate reductase TERM 79 60722 - 60707 - g 74 -7.6 -3.98236 | opp_overlap 60706 AAAGTGCAGCACAAA TCTTCG ATAA CGAAGA ATTGATGGACCGTCT TERM 80 61315 - 61282 - g 73 -2.4 -5.31855 | overlap 61314 GACCAAGAAGAAAAA CGCTATGTACAGCA TTTAAT TGATGAAAATAGCG AAGAATTCTACGACT cysJ 59662 - 61506 + | putative sulfite reductase (NADPH) flavoprotein alpha-component TERM 81 61493 - 61483 - f 83 -3.2 -5.75538 | opp_overlap 61488 TTGAAAAAAGAAAAA CGCT ATC AACG TGACGTTTATTAATT TERM 82 63125 - 63109 - g 72 -3.7 -4.96501 | overlap 63118 63119 TCGGAGAAAAAGAAA TCTTGGA AAG TCTAAGA CCTATCTTAGAACAA cysI 61530 - 63239 + | putative sulfite reductase (NADPH) hemoprotein beta-component TERM 83 63507 - 63530 + G 80 -11.8 -2.55309 | gap 1, opp_overlap 63499 63505, overlap 63506 63505 AGCAAAGGACATATC GTCACACGCCT AAA AGGCG-GTGAC CCTTTCTTGTTCGGC cysG 63264 - 64037 + | putative uroporphyrin-III C-methyltransferase Sca_0062 64197 - 65099 + | putative permease cysD 65118 - 66317 + | putative sulfate adenylyltransferase cysC 66323 - 66922 + | putative adenylylsulfate kinase TERM 84 66936 - 66970 + F 77 -4.5 -5.3236 | gap 1, overlap 66938 AAGTTTTTAAATGAG TA-GCACATACAGT AATGAGGG GCTGTATGTGCTTA TTTTTTATGAGTTAT TERM 85 66938 - 66967 + F 91 -8.7 -4.73105 | overlap 66936 GTTTTTAAATGAGTA GCACATACAGT AATGAGGG GCTGTATGTGC TTATTTTTTATGAGT Sca_0065 67060 - 67842 + | putative short chain dehydrogenase SDR TERM 86 67858 - 67891 + T 90 -7.6 -5.18355 | gap 1, opp_overlap 67856 67852 67861, overlap 67861 GCAACAAAATAAATT AAAGGCAAGCGAACT TTAAC AGTT-GCTTGCCTTA TTTTTACTTTTTGCG TERM 87 67861 - 67888 + T 100 -9.3 -4.64346 | gap 1, opp_overlap 67856 67852 67861, overlap 67858 ACAAAATAAATTAAA GGCAAGCGAACT TTAAC AGTT-GCTTGCC TTATTTTTACTTTTT TERM 88 67888 - 67861 - T 89 -9.3 -4.33487 | gap 1, opp_overlap 67861 67858, overlap 67856 67852 ACAAAATAAATTAAA GGCAAGCGAACT TTAAC AGTT-GCTTGCC TTATTTTTACTTTTT fcbC 68368 - 67895 - | putative thioesterase TERM 89 68595 - 68585 - H 72 -8.2 -3.22491 | opp_overlap 68578 68585 AAACTCCAGCAGCAA CCGC TTT GCGG TATCGTGCTAAATCC TERM 90 68650 - 68672 + H 70 -6.3 -4.11748 | overlap 68636 68648 AGAAGATGTGTTGAA GCGCTTCTT CTTGT AAGAAGGGC TATTTTATTTATCCA Sca_0067 68712 - 68879 + | hypothetical protein TERM 91 68902 - 68928 + F 78 -6.7 -4.64952 | opp_overlap 68902 68903 AATAATTTTTATTAA CGTATCTAATA CTGAA TATTAGGTGCG TTTATTTATATAATT Sca_0068 69022 - 69606 + | putative lipoprotein TERM 92 69984 - 70011 + F 100 -16.4 -5.23016 | TGGATAGATTCTTCG CCCCTATAGAGC CAAA GCTCTGTAGGGG TTTTTTGAGTTGTTT metE 70060 - 71187 + | putative methionine synthase TERM 93 71235 - 71198 - f 100 -18.8 -5.53288 | opp_overlap 71198 GTTAATTGAAAAAAA TACCGTTGTTTTGGTT TATTGC AACCAAAACAACGGTA TTTTTATGTCTTTCA TERM 94 71198 - 71235 + F 100 -18.8 -5.14985 | opp_overlap 71198 GTTAATTGAAAAAAA TACCGTTGTTTTGGTT TATTGC AACCAAAACAACGGTA TTTTTATGTCTTTCA Sca_0070 71424 - 71747 + | putative transcriptional regulator Sca_0071 71740 - 72300 + | hypothetical protein Sca_0072 72297 - 72677 + | hypothetical protein Sca_0073 72694 - 72783 + | hypothetical protein TERM 95 73188 - 73163 - f 82 -6.1 -5.26918 | opp_overlap 73163, overlap 73165 ACAGTTTATAAAAAA GGCTTCAGAAC AGTG GTTCTGAGGTC TTTTTTTAAAAGAGA TERM 96 73163 - 73188 + F 100 -10.5 -5.40072 | opp_overlap 73163 73165 ACAGTTTATAAAAAA GGCTTCAGAAC AGTG GTTCTGAGGTC TTTTTTTAAAAGAGA TERM 97 73788 - 73802 + G 71 -8.6 -3.20164 | AAGAATATGCCATTG TTGGTC TAG GACCAA TTGAATTGAATGTCA gloA 73310 - 74302 + | glyoxylase family protein Sca_0075 74324 - 74926 + | putative phospholipase/carboxylesterase TERM 98 74981 - 74932 - T 74 -2.4 -5.6473 | gap 2, opp_overlap 74936 74949, overlap 74936 AGAAGATTAAAAAAA GAAACCTAGATGAATCTGGAACGT CTTC AAGTTCCT--TTCATCTAGGTTTT TTGTATACATAGAAT TERM 99 74977 - 74936 - T 71 -3.2 -5.23943 | gap 2, opp_overlap 74936 74949, overlap 74932 GATTAAAAAAAGAAA CCTAGATGAATCTGGAACGT CTTC AAGTTCCT--TTCATCTAGG TTTTTTGTATACATA TERM 100 74936 - 74977 + T 74 -3.2 -5.38047 | gap 2, opp_overlap 74936 74932, overlap 74949 GATTAAAAAAAGAAA CCTAGATGAATCTGGAACGT CTTC AAGTTCCT--TTCATCTAGG TTTTTTGTATACATA Sca_0076 76146 - 75001 - | putative oxidoreductase TERM 101 75207 - 75230 + g 75 -9.6 -3.14647 | CTAACATTGCTAAGT TTGCACCTTC TCCT GAAGGTGCCA TTAAGTGTGCTGCAT TERM 102 76381 - 76342 - R 100 -11.7 -4.98531 | TGTGGAAAGCAAAAA CTTCCTCTAATGCAA TTTTGATTGT CTGCATTAGAGGAAG TACAAATTATTGAAT Sca_0077 77134 - 76430 - | hypothetical protein Sca_0078 77676 - 77137 - | hypothetical protein Sca_0079 78533 - 77691 - | hypothetical protein TERM 103 77854 - 77834 - G 75 -6.9 -4.2828 | CTTCAGTGATTAAAA TTTCGCCAT CAT ATGGAGAAA TACCTGCGTATGTTT Sca_0080 79054 - 78530 - | putative DNA binding protein TERM 104 79250 - 79273 + r 100 -13.2 -5.01845 | TCGCGGTCGGTCCTA CACGTTGGCC CTCA GGTCAACGTG TTTTTAATTATTGTC TERM 105 79375 - 79416 + r 100 -14.5 -4.87389 | opp_overlap 79378, overlap 79376 79377 TTTTTGATGATAAAA AAACGGCAGGTCTCAAAAC GAAA GTTTTGAGACCTGCCGACG TTTGTTTTTAAAATC TERM 106 79376 - 79415 + r 100 -18 -3.51349 | opp_overlap 79378, overlap 79375 79377 TTTTGATGATAAAAA AACGGCAGGTCTCAAAAC GAAA GTTTTGAGACCTGCCGAC GTTTGTTTTTAAAAT TERM 107 79377 - 79414 + r 100 -21.5 -2.69725 | opp_overlap 79378, overlap 79376 79375 TTTGATGATAAAAAA ACGGCAGGTCTCAAAAC GAAA GTTTTGAGACCTGCCGA CGTTTGTTTTTAAAA TERM 108 79413 - 79378 - R 100 -25 -5.67063 | opp_overlap 79377 79376 79375 TTGATGATAAAAAAA CGGCAGGTCTCAAAAC GAAA GTTTTGAGACCTGCCG ACGTTTGTTTTTAAA Sca_0081 80133 - 79441 - | Putative intracellular protease/amidase TERM 109 80565 - 80550 - H 72 -4.7 -4.87133 | ACTTCCTAAAGAAAA TCGAG ATAACA CTCGA TTACAGTCACAATAT TERM 110 80670 - 80719 + H 81 -3.7 -5.54079 | ATTCTCAATCATTCA CCGTATGCCCTTATGATGA ATTCTATCCCTG TCTTCATAAGTACATACGG TTTTTTAATTTTTCA Sca_0082 80762 - 81262 + | hypothetical protein TERM 111 81310 - 81265 - f 100 -9.1 -4.36262 | opp_overlap 81269, overlap 81266 81269 ACATCTATATTAAAA TTCAGAGTATCTGGAAAGCGA CTAG TCGTTTTCCAGATACTCTTTT TAATAACACATATGT TERM 112 81309 - 81266 - f 100 -12.6 -3.21034 | opp_overlap 81269, overlap 81265 81269 CATCTATATTAAAAT TCAGAGTATCTGGAAAGCGA CTAG TCGTTTTCCAGATACTCTTT TTAATAACACATATG TERM 113 81269 - 81306 + F 100 -20.9 -4.7254 | opp_overlap 81266 81265 81269 CTATATTAAAATTCA GAGTATCTGGAAAGCGA CTAG TCGTTTTCCAGATACTC TTTTTAATAACACAT TERM 114 81306 - 81269 - f 100 -18.7 -2.79239 | opp_overlap 81269, overlap 81266 81265 CTATATTAAAATTCA GAGTATCTGGAAAGCGA CTAG TCGTTTTCCAGATACTC TTTTTAATAACACAT TERM 115 81428 - 81414 - g 74 -4.3 -5.07107 | TAAAGCGCCAAAAAA CCTTT ATTTG AAAGG TGGGGAGCGTGCAGT Sca_0083 81388 - 82122 + | putative esterase/lipase Sca_0084 82387 - 82974 + | similar to ica operon transcriptional regulator TERM 116 83818 - 83833 + G 85 -4 -5.74684 | GAGAAAGCCTCTAAA GTGATG ATGC CATTAC TTTTTGTTTTTCTTA Sca_0085 83302 - 84636 + | putative sodium-dependent transporter TERM 117 84686 - 84643 - f 100 -11.2 -4.52143 | opp_overlap 84645, overlap 84645 TTTAAATAGAAGAAA TAGAGCAGGACAAGAAAC GATTATAA GTTTTTTGTCCTGCTCTT TTTTTGAGTTAAGGT TERM 118 84684 - 84645 - f 100 -13.8 -3.85554 | opp_overlap 84645, overlap 84643 TAAATAGAAGAAATA GAGCAGGACAAGAAAC GATTATAA GTTTTTTGTCCTGCTC TTTTTTTGAGTTAAG TERM 119 84645 - 84684 + F 100 -16 -5.53288 | opp_overlap 84645 84643 TAAATAGAAGAAATA GAGCAGGACAAGAAAC GATTATAA GTTTTTTGTCCTGCTC TTTTTTTGAGTTAAG TERM 120 85583 - 85565 - g 79 -7.4 -4.4874 | opp_overlap 85564 85565, overlap 85567 TTTAAAAATGTAAAA CGTCTTGC GTT GCAAGAAG GTATTTTAGCAGGCA cysM 84836 - 85732 + | Pyridoxal-5'-phosphate-dependent enzyme, beta family metC 85775 - 86920 + | putative Cys/Met metabolism pyridoxal-5'-phosphate dependent enzyme TERM 121 86943 - 86968 + F 93 -9 -4.87037 | GGCATGATATTGAGA GGCGCTTACC ATATGG GGTAGGTGCC TTTTTAATATGTATT TERM 122 87415 - 87401 - g 81 -7.2 -4.60487 | opp_overlap 87400 87401 GATGAGTGCTAAAAA GCAAAT TGG ATTTGC GTTATCTGTTTCACT Sca_0088 87078 - 87698 + | putative LysE type translocator TERM 123 87794 - 87759 - T 100 -13.5 -3.24232 | opp_overlap 87764, overlap 87764 GTGTCTTGAAATATA TAAAACGTCGATGCT CGCAAC AGCATCGACGTTTTT GTGTTCTGATTTGTT TERM 124 87789 - 87764 - T 100 -13.4 -4.74013 | opp_overlap 87764, overlap 87759 TTGAAATATATAAAA CGTCGATGCT CGCAAC AGCATCGACG TTTTTGTGTTCTGAT TERM 125 87764 - 87789 + T 100 -13.4 -5.16133 | opp_overlap 87759 87764 TTGAAATATATAAAA CGTCGATGCT CGCAAC AGCATCGACG TTTTTGTGTTCTGAT Sca_0089 88278 - 87808 - | putative thioesterase Sca_0090 89250 - 88282 - | putative 3-hydroxyacyl-CoA dehydrogenase Sca_0091 90142 - 89252 - | hypothetical protein TERM 126 90159 - 90170 + r 83 -3 -5.77853 | ATTGAATTTGCCTCC TCAA CCAA TTGA TTTTTTTTCAACGTT TERM 127 90231 - 90258 + r 75 -7.1 -4.11346 | opp_overlap 90232, overlap 90232 CAACCCAAAAATAAA ACTTGTTTTGG AAAGAA CCAAAACAAGC TTATTATTTACGTGT TERM 128 90257 - 90232 - R 100 -10.6 -5.29885 | opp_overlap 90231 90232 AACCCAAAAATAAAA CTTGTTTTGG AAAGAA CCAAAACAAG CTTATTATTTACGTG TERM 129 90232 - 90257 + r 81 -10.6 -3.05723 | opp_overlap 90232, overlap 90231 AACCCAAAAATAAAA CTTGTTTTGG AAAGAA CCAAAACAAG CTTATTATTTACGTG Sca_0092 90795 - 90262 - | putative transcriptional regulator Sca_0093 90962 - 91750 + | putative N-acetyltransferase Sca_0094 94515 - 91831 - | putative 5'-nucleotidase TERM 130 91905 - 91951 + g 74 -4 -5.16206 | gap 1, overlap 91908 GTGATATTGGAATGA TAGGTGAATTGTGAGGTTCAG AGTGTC CTGAATTTGGCAATTCA-CTA TTTTTATGTTGCTTT TERM 131 91908 - 91949 + g 81 -8.2 -4.18115 | overlap 91905 ATATTGGAATGATAG GTGAATTGTGAGGTTCAG AGTGTC CTGAATTTGGCAATTCAC TATTTTTATGTTGCT Sca_0095 94983 - 95999 + | putative autolysin with LysM domain TERM 132 96034 - 96057 + T 100 -11 -5.08824 | opp_overlap 96034 AAATCTTTCTAGCAA GCCGGAGGTT TTAG GACCTCTGGC TTTTTTGCGTAAAAA TERM 133 96057 - 96034 - T 70 -8.1 -3.1506 | opp_overlap 96034 AAATCTTTCTAGCAA GCCGGAGGT TTTAGG ACCTCTGGC TTTTTTGCGTAAAAA TERM 134 96074 - 96095 + T 90 -11.7 -2.92669 | opp_overlap 96074 96087, overlap 96071 96067 96077 TTTTTGCGTAAAAAA GAATGCTGA GAAC TCAGCATTC TGATTAATTTATAAT TERM 135 96095 - 96074 - T 100 -11.7 -5.00616 | opp_overlap 96074 96071 96067 96077, overlap 96087 TTTTTGCGTAAAAAA GAATGCTGA GAAC TCAGCATTC TGATTAATTTATAAT TERM 136 96077 - 96092 + T 72 -7.6 -3.59516 | opp_overlap 96074 96087, overlap 96074 96071 96067 TTGCGTAAAAAAGAA TGCTGA GAAC TCAGCA TTCTGATTAATTTAT Sca_0096 96400 - 96104 - | hypothetical protein Sca_0097 96570 - 96938 + | conserved hypothetical protein with MutT domain TERM 137 96991 - 96934 - T 74 -8.8 -3.24588 | gap 3, opp_overlap 96934 AACATAAAAAGGATA TGTGACCAT-TGTAGTG-CCCCCAAAAGT TGA ACTTTCGGGGGGCAGTACACATCGTC-CA TATCCTTATATTTTT Sca_0098 97295 - 97005 - | hypothetical protein Sca_0099 98229 - 97384 - | putative esterase of the alpha-beta hydrolase superfamily Sca_0100 98912 - 98322 - | hypothetical protein TERM 138 99025 - 99001 - R 82 -8.6 -3.93769 | opp_overlap 98998 99001, overlap 98997 AGTGCAAAAAATTAA GCAGCTCGCT TTATG AACGAACTGC TTGTTAGTATTTATT Sca_0101 99311 - 99039 - | hypothetical protein Sca_0102 100213 - 99422 - | hypothetical protein Sca_0103 101322 - 100210 - | hypothetical protein gltC 102426 - 101542 - | putative transcription activator of glutamate synthase operon TERM 139 101949 - 101965 + g 73 -6.7 -4.22524 | CTTCAAATAAAGGTG TAATGAT TAA ATCATTA TTTCGTTTTAAATCT TERM 140 104507 - 104478 - g 86 -9.4 -4.21462 | overlap 104496 ATTGATTATTGAAAA TTTGCGTCAAGA GACAAG TCTTGTCGCAAA AGGCGGAGAAATCCG TERM 141 104861 - 104851 - g 83 -2.4 -5.92399 | CAAGAAAATAAAAAA CGTC AAA GCCG AGAAGAAGCACATTT TERM 142 106840 - 106824 - g 84 -5.2 -5.32699 | TGAAACATTAAAAAA CATGTT AGAAG AACATG CGGCATATACAGGAA gltB 102568 - 107061 + | glutamate synthase large subunit gltD 107084 - 108556 + | NADH-glutamate synthase small subunit TERM 143 108570 - 108592 + F 89 -9.2 -4.27617 | opp_overlap 108566 108570 AATAAAAAACACTAA TAGAGGGG GCAGACA CCCCTCTA TTTTAATGCAATATG TERM 144 108592 - 108570 - f 84 -9.2 -3.7076 | opp_overlap 108570, overlap 108566 AATAAAAAACACTAA TAGAGGGG GCAGACA CCCCTCTA TTTTAATGCAATATG TERM 145 108824 - 108857 + F 100 -9 -5.08367 | opp_overlap 108824 TAATAGATATAAAAA GGCAATCATTCAAT TTTCGT ATTGAGTGCTTGCC TTTTTAATTTGTATT TERM 146 108857 - 108824 - f 83 -6.8 -5.09685 | opp_overlap 108824 TAATAGATATAAAAA GGCAATCATTCAAT TTTCGT ATTGAGTGCTTGCC TTTTTAATTTGTATT Sca_0107 108983 - 109384 + | putative lyase TERM 147 109396 - 109421 + F 100 -9.1 -5.53288 | opp_overlap 109400 ATAATAAGGTGTGAA GTGATGGGA AAGGCTAA TCCCATCAC TTTTTTTAGGTTAAA TERM 148 109833 - 109823 - g 73 -6.8 -4.24326 | AAAGATGATGTAAAA GCAG CTG CTGC GAAAAAAGGTAATCC Sca_0108 109544 - 110230 + | truncated PTS system sugar-specific IIBC component (fragment 1) Sca_0109 110297 - 110971 + | truncated PTS system sugar-specific IIBC component (fragment 2) TERM 149 111045 - 111070 + F 95 -7.7 -5.60993 | opp_overlap 111045 GAAAAGATTGTAAAA CAGAACATC ATTTTTCA GATGTTCTG TTTTTTTATAAAGAG TERM 150 111070 - 111045 - f 79 -7.7 -4.23434 | opp_overlap 111045 GAAAAGATTGTAAAA CAGAACATC ATTTTTCA GATGTTCTG TTTTTTTATAAAGAG TERM 151 111522 - 111506 - g 76 -6.5 -4.39386 | overlap 111509 CGTAAATCAGCAAAA GAAGGTG TAC CACCTAC AAATTGGGAATCGAA TERM 152 111519 - 111509 - g 73 -6.8 -4.29953 | overlap 111506 AAATCAGCAAAAGAA GGTG TAC CACC TACAAATTGGGAATC treC 111107 - 112744 + | trehalose-6-phosphate hydrolase Sca_0111 112771 - 113493 + | putative trehalose operon transcriptional regulator TERM 153 113501 - 113534 + F 93 -5.4 -6.09196 | GAAGATAAGGTGAAA GGCTAACTCATG TGGAAAGATT CATGAGTTGGTC TTTTTTTCTTTTGGA Sca_0113 113623 - 113898 + | similar to transcriptional regulator (ArsR family) Sca_0114 113912 - 114583 + | hypothetical protein TERM 154 115037 - 114995 - T 100 -10.8 -5.10064 | opp_overlap 114999, overlap 114999 TTTAATACATAAAAA CAAACAGGAAATTGAGGG AGCGCAA CCTTCAATTTCCTGTTTT TCCTTTATATACTAA TERM 155 115033 - 114999 - T 100 -11.6 -5.02777 | opp_overlap 114999, overlap 114995 ATACATAAAAACAAA CAGGAAATTGAGGG AGCGCAA CCTTCAATTTCCTG TTTTTCCTTTATATA TERM 156 114999 - 115033 + T 100 -13.8 -5.07011 | opp_overlap 114995 114999 ATACATAAAAACAAA CAGGAAATTGAGGG AGCGCAA CCTTCAATTTCCTG TTTTTCCTTTATATA Sca_0115 116004 - 115096 - | putative transcriptional regulator of LysR type TERM 157 115206 - 115189 - G 71 -7.1 -3.889 | GTGAAGCACACCAAA TTCAATC ATTT GATTGAA AGGTGCGCCAATCGG TERM 158 116022 - 116042 + H 81 -9.9 -3.42407 | opp_overlap 116026 GATTAATCCTCTCAT TACATAAGT ATA ACTTATGTA TTCATTAATAATATC Sca_0116 116135 - 117325 + | putative transporter protein TERM 159 117335 - 117363 + T 100 -10.3 -5.54894 | opp_overlap 117335 TATTAATTAAAAAAA TGCGGTGTGCCTT TAT GAGACATACCGCA TTTTTTTACTCACTT TERM 160 117363 - 117335 - T 100 -9.6 -5.65513 | opp_overlap 117335 TATTAATTAAAAAAA TGCGGTGTGCCT TTATG AGACATACCGCA TTTTTTTACTCACTT Sca_0117 117575 - 117369 - | hypothetical protein Sca_0118 117812 - 118336 + | putative acetyltransferase (GNAT) family protein dnaX 118417 - 120168 + | DNA polymerase III gamma and tau subunits Sca_0120 120372 - 120689 + | hypothetical protein TERM 161 120783 - 120744 - g 74 -8.4 -3.74251 | opp_overlap 120746, overlap 120745 GATAGTTTCATGAAA TTGCCAGGCATTGGGCCG AAAA CGGCGCAACGTCTGGCTT TTCATGTATTAGATA TERM 162 120782 - 120745 - g 84 -11.9 -2.84229 | opp_overlap 120746, overlap 120744 ATAGTTTCATGAAAT TGCCAGGCATTGGGCCG AAAA CGGCGCAACGTCTGGCT TTTCATGTATTAGAT TERM 163 120746 - 120781 + G 100 -15.4 -4.43213 | opp_overlap 120745 120744 TAGTTTCATGAAATT GCCAGGCATTGGGCCG AAAA CGGCGCAACGTCTGGC TTTTCATGTATTAGA recR 120696 - 121292 + | putative recombination protein TERM 164 121342 - 121300 - f 100 -25.3 -3.25361 | opp_overlap 121300 121337 121340, overlap 121303 AAATGTAGAATTCAA TAACAGCATCCTGTGAAAC AAGCA GTTTCACAGGATGCTGTTA TTTTTTTTAAGTTTT TERM 165 121300 - 121342 + F 100 -25.3 -5.91981 | opp_overlap 121300 121303, overlap 121337 121340 AAATGTAGAATTCAA TAACAGCATCCTGTGAAAC AAGCA GTTTCACAGGATGCTGTTA TTTTTTTTAAGTTTT TERM 166 121339 - 121303 - f 100 -22.6 -3.75766 | opp_overlap 121300 121337, overlap 121300 TGTAGAATTCAATAA CAGCATCCTGTGAAAC AAGCA GTTTCACAGGATGCTG TTATTTTTTTTAAGT TERM 167 121745 - 121734 - f 71 -5.8 -4.39696 | opp_overlap 121734 TTCCAAACTAACAAA CGTC TTAG GACG TTTTAAAACAAATTA TERM 168 121997 - 121976 - f 100 -13.1 -3.224 | overlap 121974 TAATGCCGGATAATA TGCAGAACC GCAT GGTTCTGCA ATGAAAGACGGTTTT TERM 169 122428 - 122410 - f 71 -8.8 -2.75963 | overlap 122409 AGTCTGATGTGAAAG CCCACGGC TCA ACCGTGGA GGGTCATTGGAAACT TERM 170 123380 - 123363 - f 70 -8.5 -3.18065 | AGGATATATACGGAA CAGTTTC AACA GAAACTG ACGGATTAACGTGAC TERM 171 123561 - 123547 - f 70 -8.6 -2.56715 | overlap 123543 ATCGCTAGTAATCGA TTTGCC GAT GGCAAA GAAGATTACTCACAT TERM 172 123883 - 123864 - f 90 -10.8 -3.66803 | opp_overlap 123863 123862, overlap 123857 CGGGAAGAGCCCAAA CCAATGAG CTTG CTCATTGG GGTTGTAGGACACTC TERM 173 126704 - 126721 + F 100 -11.3 -6.04378 | opp_overlap 126703 TTGCCAGGCAATTAT GAGACCC GTGT GGGTCTC TTTTTTTTATCCTTT Sca_0122 126795 - 128144 + | putative Orn/Lys/Arg decarboxylase tmk 128146 - 128760 + | thymidylate kinase Sca_0124 128971 - 129300 + | hypothetical protein holB 129474 - 130400 + | putative DNA polymerase III, delta' subunit Sca_0126 130401 - 131207 + | putative homolog of PSP1 Sca_0127 131222 - 131611 + | hypothetical protein Sca_0128 131700 - 132491 + | conserved hypothetical protein with SAM binding motif Sca_0129 132481 - 132741 + | putative nuclease Sca_0130 132738 - 133577 + | tetrapyrrole (corrin/porphyrin) methylase family protein TERM 174 133653 - 133676 + F 88 -4 -5.80364 | gap 1 ATAAATGGAATTAAA CTGTGTTATTT TAT AGATA-CACAG TTTTTTTCTTGAAAT TERM 175 134180 - 134168 - g 70 -3.3 -4.89838 | overlap 134172 GGAACAAACACAAAA CTCAG TTC CTGCG CCAAAAGCGCCGGAA TERM 176 134656 - 134639 - g 84 -3.5 -5.61596 | gap 1 ACCGGCAGAAAAAAA TGCTGATG AAT CATCA-CA ATCGAAAGCAGCATC geh' 133755 - 135101 + | truncated lipase (fragment 1) geh'' 135326 - 136129 + | truncated lipase (fragment 2) TERM 177 136137 - 136165 + F 95 -11.8 -3.83758 | opp_overlap 136137 136136 AAGTTTAAAATAAAG CGCATCGTAATC TAAGT GATTGCGGTGCG TTATTGATGTTCATT TERM 178 138008 - 137994 - g 73 -6.4 -4.2231 | AAGGAGGAGGGAAAA TCCAAC GAA GCTGGA CATGCTAATTACGCC Sca_0133 137310 - 138026 + | hypothetical protein Sca_0134 138076 - 138171 + | hypothetical protein Sca_0135 138156 - 138392 + | hypothetical protein Sca_0136 138389 - 138865 + | truncated putative membrane protein Sca_0137 139012 - 139383 + | hypothetical protein TERM 179 139399 - 139437 + F 72 -7.6 -3.65996 | opp_overlap 139385 139406, overlap 139402 CTGCTGCATAGGAAT GAGCATACATGTTTATTC CCC GAATAGATATGTGTGTCC TGTTTCTATATAGCA TERM 180 139402 - 139434 + F 77 -10.1 -2.93566 | opp_overlap 139385 139406, overlap 139399 CTGCATAGGAATGAG CATACATGTTTATTC CCC GAATAGATATGTGTG TCCTGTTTCTATATA TERM 181 140101 - 140083 - g 70 -3.2 -5.02287 | opp_overlap 140084, overlap 140084 GACAAAAATACAAAA TCTTATTT AGC AAATAAGT TAAGTGAACTTGCTG Sca_0138 139741 - 140397 + | putative ABC transporter, ATP-binding protein TERM 182 141027 - 141040 + G 77 -2.5 -5.58074 | AGTTACGATAAGTTT TTATA GTTT TATAA TTTTTTTGATACTTG Sca_0139 140407 - 141084 + | putative ABC transporter, permease TERM 183 141078 - 141116 + F 100 -12.7 -4.34402 | gap 1, opp_overlap 141072 141070 141082 TTTCAAACATTCAGA GGAATAGAATCGTTTCGG TTTT CCGCAA-GATTCTATTCC TTTTCATATGCACCA metS 141353 - 143356 + | Methionyl-tRNA synthetase Sca_0141 143564 - 144337 + | putative TatD-related deoxyribonuclease TERM 184 144385 - 144335 - f 74 -2.1 -5.53288 | gap 1, opp_overlap 144349, overlap 144349 TTTAATTTAAAAAAA TAAACATGAAAAAAGAACCATTCT GAAA AGAGTGGTTC-TTTTTAATGAGTA GTGAAATTTTATTTT TERM 185 144349 - 144372 + F 100 -10.4 -4.75372 | opp_overlap 144335 144349 ATAAACATGAAAAAA GAACCATTCT GAAA AGAGTGGTTC TTTTTAATGAGTAGT TERM 186 144372 - 144349 - f 95 -8.2 -5.34055 | opp_overlap 144349, overlap 144335 ATAAACATGAAAAAA GAACCATTCT GAAA AGAGTGGTTC TTTTTAATGAGTAGT TERM 187 144653 - 144626 - f 100 -12.2 -5.58074 | opp_overlap 144629, overlap 144637 TAAGCATCAAAAAAA TAACCATCCAAC TTTG GTTGAATGGTTA TAAACAAATGAACCA TERM 188 144698 - 144726 + F 100 -15.5 -4.15998 | opp_overlap 144705 TTTAACGGGCCTAGA GGGATAACATGTT CAC AGCATGTTATCCC TTGTTTAATTTAAAT TERM 189 144917 - 144890 - f 100 -12.2 -5.58074 | opp_overlap 144893 TAAGCATCAAAAAAA TAACCATCCAAC TTTG GTTGAATGGTTA TAAATAAAGAACTAA TERM 190 144961 - 144989 + F 100 -15.5 -4.08651 | opp_overlap 144968 TTTAACGGGCCTAGA GGGATAACATGTT CAC AGCATGTTATCCC TTGTTTACTTAAAAT Sca_0142 145136 - 145687 + | putative Primase-related protein (Toprim domain) TERM 191 146392 - 146371 - g 70 -6.7 -4.08945 | gap 1, overlap 146357 146379 ATCAGTTTTTCAAAA TGAC-GAAAG CTG CTTTCAGTCA GCGTCGTAAAACAAT Sca_0143 145689 - 146579 + | ribosomal RNA adenine dimethylase Sca_0144 146679 - 146942 + | hypothetical protein TERM 192 147017 - 146996 - f 100 -13.1 -5.00616 | opp_overlap 146996 GCTTCGTCTAAAAAA GGAATCCTG TGGG CAGGATTCC TTTTTTAATGCAAAA TERM 193 146996 - 147017 + F 100 -13.1 -5.14563 | opp_overlap 146996 GCTTCGTCTAAAAAA GGAATCCTG TGGG CAGGATTCC TTTTTTAATGCAAAA Sca_0145 147402 - 148172 + | GHMP kinase family protein TERM 194 148316 - 148300 - g 71 -5.2 -4.62203 | opp_overlap 148298 148300 148311 TTCAAACAAGCAAAA TCTTCA ATCAG TGAAGA TATTCATATTGTGCG purR 148189 - 149013 + | pur operon repressor Sca_0147 149032 - 149412 + | putative purine regulatory protein spoVG 149479 - 149802 + | stage V sporulation protein G TERM 195 149853 - 149828 - f 74 -8.9 -3.33865 | opp_overlap 149828, overlap 149826 TATTTGAAATGAAGA GGCTCTCGGTC AAAA GATCGGGAGCC TTTTTCTTTAAAATA TERM 196 149828 - 149853 + F 100 -13.3 -5.28942 | opp_overlap 149828 149826 TATTTGAAATGAAGA GGCTCTCGGTC AAAA GATCGGGAGCC TTTTTCTTTAAAATA gcaD 150051 - 151415 + | putative UDP-N-acetylglucosamine pyrophosphorylase TERM 197 152418 - 152397 - g 81 -8.1 -4.24404 | overlap 152390 152399 ACGTAAACCTGAAAA TACAACTGA ATTA TCAGTTGCA GGACTTATAGCGCAA TERM 198 152416 - 152399 - g 74 -8.5 -3.71804 | overlap 152390 152397 GTAAACCTGAAAATA CAACTGA ATTA TCAGTTG CAGGACTTATAGCGC prs 151519 - 152484 + | ribose-phosphate pyrophosphokinase TERM 199 152519 - 152498 - f 100 -14.5 -4.34947 | opp_overlap 152498 AATACATTATCAAAA CTGCCGTTC AGCT GAACGGCAG TTTTTTTATGGCTGT TERM 200 152498 - 152519 + F 100 -14.5 -5.65177 | opp_overlap 152498 AATACATTATCAAAA CTGCCGTTC AGCT GAACGGCAG TTTTTTTATGGCTGT TERM 201 153034 - 152998 - g 81 -8.1 -4.33653 | CACTTAAAAACCAAA TCACTCACATCGACTTC TTA GCAATCAACATGAGTGA AGAACGTACTGTTGA rplY 152742 - 153386 + | 50S ribosomal protein L25 TERM 202 153411 - 153440 + F 100 -10.1 -5.93809 | opp_overlap 153411 CGCTTTATTTGAAAA TACCGTTTGTGCT AAAT GGCGCAAATGGTA TTTTTTTTATGGACG TERM 203 153727 - 153757 + F 81 -6.3 -5.09762 | gap 1, opp_overlap 153726, overlap 153728 AAAAATAACAAATGG CCTCTCATGCTTAA CTCG TTAAGC-TGAGAGA TTTTTGTGTTAAGAT TERM 204 153728 - 153756 + F 83 -9.8 -3.64773 | gap 1, opp_overlap 153726, overlap 153727 AAAATAACAAATGGC CTCTCATGCTTAA CTCG TTAAGC-TGAGAG ATTTTTGTGTTAAGA pth 153873 - 154445 + | Peptidyl-tRNA hydrolase mfd 154442 - 157960 + | putative transcription-repair coupling factor Sca_0154 157950 - 159488 + | putative polysaccharide biosynthesis protein Sca_0155 159485 - 160681 + | Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain Sca_0156 160683 - 160949 + | hypothetical protein with S4 domain Sca_0157 160951 - 161217 + | protein with S4 domain Sca_0158 161232 - 161603 + | putative cell division protein TERM 205 162108 - 162090 - g 76 -2.4 -5.49234 | ATAGCGAAGAAAAAA TGACTTCT ATC AAACGTCA AACTGAATCAAGAAG Sca_0159 161738 - 162148 + | putative RNA binding protein with S1 domain TERM 206 162168 - 162193 + F 100 -11.3 -5.07652 | opp_overlap 162167 162166 162163 162170, overlap 162191 162191 ATCTTATATATAATC TAGACTGTTTC TTAG GGAACAGTCTA TTTTATTTTGAAAAA Sca_0160 162400 - 163680 + | putative PP-loop family protein TERM 207 164027 - 164047 + G 72 -8.3 -3.58343 | opp_overlap 164031, overlap 164030 TATTACTGAATTATT GAAATCACG TCG CGTGAATTC TTTAAAAATCGTGAC TERM 208 164043 - 164031 - g 72 -7.7 -3.71794 | opp_overlap 164030 164027 ACTGAATTATTGAAA TCACG TCG CGTGA ATTCTTTAAAAATCG hpt 163683 - 164228 + | putative hypoxanthine-guanine phosphoribosyltransferase TERM 209 164294 - 164304 + F 75 -4 -5.28166 | CCATAAAAAGTTATA TTGT GTT ACAA TTTTTGTTAGTTTTA TERM 210 164608 - 164594 - g 74 -4.3 -5.01845 | TATAATAACGAAAAA GACTT GCAAA AAGTC ACAGATGAAGCACAC TERM 211 165458 - 165441 - g 71 -7 -3.9243 | CAATTGCGCAAAGAA CACCAG GTTTCT CTGGTG CCGATTTAGAAAACT ftsH 164345 - 166447 + | ATP-dependent metalloprotease FtsH TERM 212 166491 - 166526 + F 80 -6.4 -5.00616 | gap 1, opp_overlap 166491 TAATGTAGATTAAAA TCTCTTTCTGC-TAT CATGAGA ATACGCAGGAAGAGA TTTTTTAGACCAAAA hsp33 166601 - 167485 + | heat-shock protein HSP33 (33 kDa chaperonin) TERM 213 167500 - 167535 + F 100 -11.3 -5.51165 | opp_overlap 167498 ATTATTAAATTCAGA GCGGATTCGATGC GGATTTTAAA GCATTGAATCCGC TTTTTTTCACGTTTT cysK 167770 - 168705 + | cysteine synthase (O-acetylserine sulfhydrylase) TERM 214 168763 - 168719 - f 76 -9.4 -3.1371 | gap 1, opp_overlap 168721, overlap 168717 168721 AAGAATGAGGTAATA CAGCTGTCTGCAGAATGCTCT TATC AGAGTATTCTGCGG-CAGCTT TTTTGTTTTTGAGCA TERM 215 168761 - 168721 - f 93 -12 -3.1203 | gap 1, opp_overlap 168721, overlap 168719 168717 GAATGAGGTAATACA GCTGTCTGCAGAATGCTCT TATC AGAGTATTCTGCGG-CAGC TTTTTTGTTTTTGAG TERM 216 168721 - 168761 + F 100 -16.4 -5.93252 | gap 1, opp_overlap 168719 168717 168721 GAATGAGGTAATACA GCTGTCTGCAGAATGCTCT TATC AGAGTATTCTGCGG-CAGC TTTTTTGTTTTTGAG folP 168847 - 169632 + | dihydropteroate synthase chain A synthetase folB 169629 - 170003 + | 7,8-dihydroneopterin aldolase folK 169996 - 170478 + | 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokin a se dus1 170502 - 171497 + | putative tRNA-dihydrouridine synthase 1 TERM 217 172414 - 172404 - g 70 -3.2 -5.04385 | opp_overlap 172410 CATATTTCTAAAAAA GTAC TAG GCAC TGCAGTAGTTCCTTA TERM 218 172715 - 172700 - g 72 -4 -5.06816 | gap 1, opp_overlap 172700, overlap 172701 172702 ACTTGCTAAGAAAAA TC-CGGA AGA TCCGAGA TTTACAGATCGTTTC lysS 171510 - 173003 + | lysyl-tRNA synthetase TERM 219 173031 - 173051 + T 100 -9.7 -5.35222 | opp_overlap 173028 173031 AAGAAATAGAAAGAA GGGTGCTGG TAA TCAGCACTC TTTTTTATGGGTTTT TERM 220 173051 - 173031 - T 74 -6.8 -4.31608 | opp_overlap 173031, overlap 173028 AAGAAATAGAAAGAA GGGTGCTG GTAAT CAGCACTC TTTTTTATGGGTTTT TERM 221 173412 - 173393 - T 76 -5.1 -5.11112 | AAATGTTAACAAAAA CACTTAA TATAGT TTAAGTG GAAAACACAAACAAC TERM 222 173874 - 173858 - T 78 -9.5 -3.22475 | overlap 173861 TTCAGCGGTAGAATA CAACCTT GCC AAGGTTG GGGTCGCGGGTTCGA TERM 223 174373 - 174362 - T 71 -5.8 -4.39696 | opp_overlap 174362 TTCCAAATTAACAAA CGTC TTAG GACG TTTTAAAACAAATTA TERM 224 174496 - 174511 + T 71 -9 -2.73875 | opp_overlap 174495 174498, overlap 174498 GTCGAGCGAACAGAT GAGGAG CTTG CTCCTC TGATGTTAGCGGCGG TERM 225 174625 - 174604 - T 100 -13.1 -3.224 | overlap 174602 TAATGCCGGATAATA TGCAGAACC GCAT GGTTCTGCA ATGAAAGACGGTTTT TERM 226 175056 - 175038 - T 71 -8.8 -2.75963 | overlap 175037 AGTCTGATGTGAAAG CCCACGGC TCA ACCGTGGA GGGTCATTGGAAACT TERM 227 176007 - 175990 - T 70 -8.5 -3.18065 | AGGATATATACGGAA CAGTTTC AACA GAAACTG ACGGATTAACGTGAC TERM 228 176188 - 176174 - T 70 -8.6 -2.56715 | overlap 176170 ATCGCTAGTAATCGA TTTGCC GAT GGCAAA GAAGATTACTCACAT TERM 229 176510 - 176491 - T 90 -10.8 -3.66803 | opp_overlap 176490 176489, overlap 176484 CGGGAAGAGCCCAAA CCAATGAG CTTG CTCATTGG GGTTGTAGGACACTC TERM 230 179441 - 179391 - T 100 -17.3 -4.20768 | opp_overlap 179396, overlap 179396 AGTTTTAACAAACAA TAAAATAAGCATTAGAACCGTTT GAATT AAGCGGTTCTAATGCTTATTTTT AGTTATACACTGTTT TERM 231 179396 - 179436 + T 100 -20.1 -4.93365 | opp_overlap 179396 179391 TAACAAACAATAAAA TAAGCATTAGAACCGTTTG AAT TAAGCGGTTCTAATGCTTA TTTTTAGTTATACAC TERM 232 179436 - 179396 - T 100 -17.2 -5.08731 | opp_overlap 179396, overlap 179391 TAACAAACAATAAAA TAAGCATTAGAACCGTTT GAATT AAGCGGTTCTAATGCTTA TTTTTAGTTATACAC Sca_0170 180606 - 179440 - | putative sugar transport protein TERM 233 180774 - 180737 - R 76 -2.9 -5.626 | opp_overlap 180737 CATTTCATAAAAAAA TTCAATTCAGAGG TGTGGTATTAAT CTTCTGAATTGAA TCATGTGTTGTACAT Sca_0171 181314 - 180835 - | putative acetyltransferase, GNAT family Sca_0172 182699 - 181329 - | GntR family regulatory protein TERM 234 181705 - 181718 + g 79 -8.1 -4.16814 | TACTGCATAGGTGCC GGCAC AGTG GTGCC TTCTTTATCTGGTAA TERM 235 181937 - 181954 + g 72 -7.7 -3.76107 | CTGGATGCTGCTGTG CCCAGTT GATA AGCTGGG TTCTGGTTTTTAAAT pdx1 182797 - 183684 + | putative Vitamin B6 biosynthesis protein Sca_0174 183686 - 184264 + | SNO glutamine amidotransferase family protein TERM 236 184313 - 184276 - T 81 -10 -3.50447 | opp_overlap 184281, overlap 184281 TTAATTTGCAGATAA TAAAAGCGAGGACTCT TTTTAT AGAGTGCTCGCTTTTT TAAACTTTTCTAGAA TERM 237 184281 - 184308 + T 100 -9.9 -5.15117 | opp_overlap 184276 184281 TTGCAGATAATAAAA GCGAGGACTCT TTTTAT AGAGTGCTCGC TTTTTTAAACTTTTC TERM 238 184308 - 184281 - T 100 -9.9 -4.84311 | opp_overlap 184281, overlap 184276 TTGCAGATAATAAAA GCGAGGACTCT TTTTAT AGAGTGCTCGC TTTTTTAAACTTTTC Sca_0175 184791 - 184294 - | putative acetyltransferase, GNAT family Sca_0176 185255 - 184812 - | hypothetical protein TERM 239 185408 - 185381 - R 100 -10.7 -5.9003 | opp_overlap 185381, overlap 185404 AAACGAATAAAAAAA GATGACTCCCT TAAATG AGGAAGTCATC TTATGAGCTGCTTAC TERM 240 185381 - 185408 + r 78 -9.2 -3.35015 | opp_overlap 185381 185404 AAACGAATAAAAAAA GATGACTCCCTT AAAT GAGGAAGTCATC TTATGAGCTGCTTAC nupC 186637 - 185426 - | pyrimidine nucleoside transport protein TERM 241 186209 - 186221 + g 75 -9.1 -3.63046 | opp_overlap 186208 186207 TTGTCCTAAAATAGC CGCAG CAA CTGCG TTATATGATTCTAAT TERM 242 186906 - 186892 - g 78 -8.6 -3.70902 | TTGTTGAGATTCAAA GAGCAA ATA TTGCTC AACGCTTTGACTGTG ctsR 186810 - 187271 + | transcription repressor of class III stress genes TERM 243 187405 - 187389 - g 78 -10.9 -2.62546 | overlap 187388 187386 187392 ATCAAAGCAGAACAT CAAGAGG AAC CCTCTTG GGAAAACAATCAAGA Sca_0179 187290 - 187814 + | hypothetical protein Sca_0180 187819 - 188823 + | putative phosphotransferase clpC 188835 - 191300 + | ClpC ATPase family protein TERM 244 191371 - 191332 - f 82 -6.4 -5.1963 | opp_overlap 191335, overlap 191335 TTGAATGAATAAAAA GAAGAGCATGCGCTGCTT TAAA AAGCAGTGTGTGCTCTTT CTTTATGCTTTTGAA TERM 245 191368 - 191335 - f 85 -8.1 -4.67357 | opp_overlap 191335, overlap 191332 AATGAATAAAAAGAA GAGCATGCGCTGCTT TAAA AAGCAGTGTGTGCTC TTTCTTTATGCTTTT TERM 246 191335 - 191368 + F 100 -14.7 -4.66388 | opp_overlap 191335 191332 AATGAATAAAAAGAA GAGCATGCGCTGCTT TAAA AAGCAGTGTGTGCTC TTTCTTTATGCTTTT radA 191563 - 192933 + | DNA repair protein radA Sca_0183 192964 - 194022 + | putative membrane domain of (PIN domain superfamily) TERM 247 194899 - 194886 - g 72 -3.7 -5.03314 | opp_overlap 194886 GTTATCGTGAAAAAA GACGG CGTA CCGAC TTATAACTTTGCGGT TERM 248 195211 - 195196 - g 73 -6.2 -4.4634 | opp_overlap 195196 195195, overlap 195184 195192 195207 AAGGCGAAGAAGAAA TCTTCT CTAA AGAAGA ATTCATTAAAATCTT gltX 194316 - 195770 + | putative glutamyl-tRNA synthetase TERM 249 196005 - 196034 + F 100 -13 -5.71983 | TGGAACCGTGCGATG GCACCTCTGACA TTAAGT TGTTAGAGGTGC TTTTTTTATAATTAG cysE 196061 - 196702 + | serine acetyltransferase cysS 196686 - 198086 + | cysteinyl-tRNA synthetase Sca_0187 198079 - 198480 + | hypothetical protein spoU 198480 - 199229 + | putative rRNA methyltransferase Sca_0189 199233 - 199757 + | hypothetical protein sigH 199829 - 200413 + | putative RNA polymerase sigma-H factor TERM 250 200767 - 200741 - g 80 -2.3 -5.64304 | overlap 200745 GAAGATAAGAAAAAA GCACCTAAAGA TAGTT TCTTTAAAGGC GTTATATCTGAGATG secE 200720 - 200917 + | preprotein translocase subunit SecE TERM 251 200967 - 200981 + G 71 -8.6 -3.28912 | opp_overlap 200961 TGGAGCAAAGCGTTG GTATGC CGT GCATAC TTACTCTGGCTATGA nusG 200938 - 201486 + | transcription antitermination protein TERM 252 201587 - 201603 + F 100 -9.5 -4.42386 | TCGTAAAGGGTAGGC CATTTCG TCA CGAAATG TTTTATGAGTGGGAG TERM 253 201943 - 201930 - g 78 -6.7 -4.56597 | GCTGGCGTTGAAAAA GGTTC TGGT GAACC TAACAAAAACAAAGT rplK 201669 - 202091 + | 50S ribosomal protein L11 TERM 254 202562 - 202546 - g 89 -10.9 -3.97406 | opp_overlap 202561, overlap 202561 GCAAAAGGTGATAAA GCTTCTG AAG CAGAAGC AGCAGGCGCTGATTA rplA 202297 - 202992 + | 50S ribosomal protein L1 TERM 255 203244 - 203270 + F 93 -5.8 -5.83226 | GTAAAAAACTTTCAA GCACTTTTTGCC GTG GGGTGAAAGTGC TTTTTTTATTGGATT TERM 256 203377 - 203359 - g 86 -4.6 -5.64006 | overlap 203362 203365 ATTGAAGCAAAAAAA CAATTAGT TGA ACAAATTG CTGATCAACTTAAAA rplJ 203332 - 203832 + | 50S ribosomal protein L10 rplL 203873 - 204238 + | 50S ribosomal protein L7/L12 TERM 257 204371 - 204340 - f 79 -10.3 -2.91772 | opp_overlap 204345, overlap 204345 AATTCTTTGAGAAAT GAAAACCCCGTTA TTGAGT TAACGGGGTTTTT CTAATGTAAGAGAGT TERM 258 204366 - 204345 - f 100 -10.2 -4.61873 | opp_overlap 204345, overlap 204340 TTTGAGAAATGAAAA CCCCGTTA TTGAGT TAACGGGG TTTTTCTAATGTAAG TERM 259 204345 - 204366 + F 100 -10.2 -4.95155 | opp_overlap 204340 204345 TTTGAGAAATGAAAA CCCCGTTA TTGAGT TAACGGGG TTTTTCTAATGTAAG Sca_0197 204499 - 205104 + | putative rRNA methylase Sca_0198 205296 - 205159 - | hypothetical protein TERM 260 206575 - 206589 + G 71 -7.2 -3.86897 | opp_overlap 206575 CGAATTACTTCAAAA CCAATT CAG AATTGG TTTGTCAAGAATGGA TERM 261 206589 - 206575 - g 73 -7.2 -4.17023 | opp_overlap 206575 CGAATTACTTCAAAA CCAATT CAG AATTGG TTTGTCAAGAATGGA rpoB 205325 - 208876 + | RNA polymerase beta chain TERM 262 212084 - 212060 - g 88 -10.9 -3.64682 | opp_overlap 212076, overlap 212065 GATTAAAGGTGCAAA TGAAACAAGAT CTT ATCTTGCTTCA GGTACTTCACGCTTG TERM 263 212079 - 212065 - g 73 -7.2 -4.06903 | opp_overlap 212076, overlap 212060 AAGGTGCAAATGAAA CAAGAT CTT ATCTTG CTTCAGGTACTTCAC rpoC 209058 - 212696 + | RNA polymerase beta-prime chain TERM 264 212724 - 212761 + F 100 -11.5 -5.26875 | gap 1, opp_overlap 212724 ATTTTATTAATTTAA GCCAATGC-TGCTTCTTG TTT TGAGAAGTATGCATTGGC TTTTTTAATTGGACA Sca_0201 212879 - 213043 + | hypothetical protein Sca_0202 213019 - 213201 + | hypothetical protein TERM 265 213210 - 213232 + F 80 -6.3 -4.87665 | opp_overlap 213209 213210 213212 AGAATAGAGAAAATG CAGACCG GTAATCATG CGGTCTG TTTTTGTAACTAAAA Sca_0203 213403 - 213657 + | putative ribosomal protein rpsL 213753 - 214166 + | 30S ribosomal protein S12 rpsG 214237 - 214707 + | 30S ribosomal protein S7 TERM 266 215179 - 215163 - g 72 -9.5 -2.71364 | TCAGGTGTTGAACCA CAAACTG AAA CAGTTTG GCGTCAAGCTACAAC TERM 267 216609 - 216595 - g 70 -8.6 -2.98122 | overlap 216568 216594 216591 TAGCACTTAAAGAAG CTGCTA AAG TAGCAG ATCCAGTAATCTTAG fusA 214821 - 216902 + | elongation factor EF-G TERM 268 216917 - 216890 - f 72 -4.3 -5.15167 | opp_overlap 216894 216914 CATCATTAAGAAAAA TAAAGGTGAAT AATTAA ATTCATCTTTA GGATCGCAACCAAGA TERM 269 216914 - 216954 + F 71 -6.9 -3.96447 | opp_overlap 216890 ATAATTAAATTCATC TTTAGGATCGCAACCAAGA ATT TTTTGGTAGGGTTCCTGAA TTGATTTTTTCATGC TERM 270 217048 - 217016 - f 82 -7.8 -4.4846 | opp_overlap 217012 217016, overlap 217017 CAACTCAACAATAAA GCTCTCATGATGGT GAGAA ACTATCATGAGAGA TAAATTAAATTAACT TERM 271 217016 - 217048 + F 76 -10 -2.57192 | opp_overlap 217016 217017, overlap 217012 CAACTCAACAATAAA GCTCTCATGATGGT GAGAA ACTATCATGAGAGA TAAATTAAATTAACT TERM 272 217047 - 217017 - f 93 -11.3 -3.27992 | opp_overlap 217016 217012, overlap 217016 AACTCAACAATAAAG CTCTCATGATGGT GAGAA ACTATCATGAGAG ATAAATTAAATTAAC tufA 217092 - 218279 + | translational elongation factor TU TERM 273 218282 - 218303 + T 72 -6.7 -4.18018 | AATCCAACAATAATT TTCGACTAA AATA TTAGTTGAA TTTTAAATAGAGAGC TERM 274 218337 - 218313 - T 73 -8.5 -3.41222 | opp_overlap 218315, overlap 218311 218315 GTTGAATTTTAAATA GAGAGCTCCTC ATT GAGGGGCTCTT TTTTTATGTCAAAAT TERM 275 218315 - 218335 + T 100 -13.3 -5.71712 | opp_overlap 218315 218313 218311 TGAATTTTAAATAGA GAGCTCCTC ATT GAGGGGCTC TTTTTTTATGTCAAA TERM 276 218335 - 218315 - T 87 -11.1 -3.27489 | opp_overlap 218315, overlap 218313 218311 TGAATTTTAAATAGA GAGCTCCTC ATT GAGGGGCTC TTTTTTTATGTCAAA TERM 277 218383 - 218358 - T 100 -12.7 -4.67641 | opp_overlap 218358 ATGTCAAAATTAAAA CGGAAACCTTT CTAT AAAGGTCTCCG TTTCTTTGCTTTCTA TERM 278 218358 - 218383 + T 100 -10.5 -4.65182 | opp_overlap 218358 ATGTCAAAATTAAAA CGGAAACCTTT CTAT AAAGGTCTCCG TTTCTTTGCTTTCTA Sca_0208 219577 - 218561 - | putative peptidase kbl 219773 - 220960 + | putative 2-amino-3-ketobutyrate coenzyme A ligase TERM 279 221024 - 220981 - T 72 -6.1 -4.32857 | opp_overlap 220983 220988, overlap 220988 TTTTCTAAATAGAAA TGTGAAACAGGACCATTCA TTTGAT TGAACGGTCCTGTTTTGTA TTTGATAGCAAAGTT TERM 280 220983 - 221022 + T 87 -10.9 -3.44848 | opp_overlap 220981 220988, overlap 220988 TTCTAAATAGAAATG TGAAACAGGACCATTCA TTTGAT TGAACGGTCCTGTTTTG TATTTGATAGCAAAG TERM 281 221017 - 220988 - T 100 -13 -3.76021 | opp_overlap 220983 220988, overlap 220981 AATAGAAATGTGAAA CAGGACCATTCA TTTGAT TGAACGGTCCTG TTTTGTATTTGATAG TERM 282 220988 - 221017 + T 100 -10.8 -4.82128 | opp_overlap 220988 220981, overlap 220983 AATAGAAATGTGAAA CAGGACCATTCA TTTGAT TGAACGGTCCTG TTTTGTATTTGATAG Sca_0210 222072 - 221074 - | Choloylglycine hydrolase family protein Sca_0211 222170 - 222673 + | putative acetyltransferase, GNAT family TERM 283 222778 - 222809 + G 89 -6 -5.40474 | overlap 222780 GCGTATCCGGATATT TTTAAGCCGTTTAA TTAT TTAGACAGCTTAGA TTTTTTTCAAAAACT Sca_0212 222688 - 223149 + | putative acetyltransferase, GNAT family Sca_0213 223359 - 224321 + | NAD dependent epimerase/dehydratase family protein TERM 284 225010 - 224989 - g 70 -3.1 -5.04265 | overlap 224990 AAAAAATATTAAAAA GGTATTATT TACT AATAATACA ATTGGAAATATTCCT Sca_0214 224510 - 225547 + | Peptidase_U61, LD-carboxypeptidase family protein TERM 285 225707 - 225690 - f 85 -8.5 -4.60924 | TAAATTTTCTAAAAA CTCATTG AATA CAATGAG CGAGATTGCTATAAT ilvE 225769 - 226848 + | branched-chain amino acid aminotroansferase TERM 286 226879 - 226862 - f 81 -8.5 -4.08164 | opp_overlap 226861 226858 226862 AAAATTGTATACAAA CCCTTTT AGTT AAAAGGG ATTTGTCTCTTTATG TERM 287 226862 - 226879 + F 70 -8.5 -3.17615 | opp_overlap 226862, overlap 226861 226858 AAAATTGTATACAAA CCCTTTT AGTT AAAAGGG ATTTGTCTCTTTATG TERM 288 226906 - 226939 + F 91 -4.6 -5.95539 | gap 1, opp_overlap 226906 226916 TATGAATATCAAAAA CAGGTCA-GAACTGC TGCGT GCAGTAGGTGACCTG TTTTTTTATTTCCGA TERM 289 226939 - 226906 - f 72 -4.6 -4.89233 | gap 1, opp_overlap 226906, overlap 226916 TATGAATATCAAAAA CAGGTCA-GAACTGC TGCGT GCAGTAGGTGACCTG TTTTTTTATTTCCGA TERM 290 227173 - 227163 - g 74 -4 -5.10767 | opp_overlap 227163 TAGTGAATACAAAAA TTCA CGA TGAA TATGTAGAAAGTTTT Sca_0216 227003 - 227392 + | hypothetical protein Sca_0217 227536 - 228255 + | putative haloacid dehalogenase-like hydrolase TERM 291 228257 - 228271 + F 79 -5.8 -5.06414 | opp_overlap 228256 228257 AGAATGAAAAATAAC CTTTTA AAA TAAAAG TTTTTATTAAACGAG Sca_0218 228296 - 228703 + | hypothetical protein TERM 292 229095 - 229082 - g 79 -3.1 -5.43866 | TAACTTTGAAAAAAA GTATG ATGT CACAC TTTATCCTCAACGAG Sca_0219 228726 - 229544 + | predicted hydrolase of the HAD superfamily TERM 293 229552 - 229578 + T 100 -11 -4.14004 | opp_overlap 229552 ATGATTAAATAAAAA GCAATGAGAAAT GCG AATTCTCATTGC TTTATGATTATCTTG TERM 294 229578 - 229552 - T 100 -11 -5.34309 | opp_overlap 229552 ATGATTAAATAAAAA GCAATGAGAAAT GCG AATTCTCATTGC TTTATGATTATCTTG Sca_0220 230248 - 229586 - | putative deoxynucleoside kinase TERM 295 230008 - 230023 + g 76 -3.3 -5.38549 | GGATGAAACCTCCGC CGTAT TCAAAC ATACG TTTTTGTTCTTTAAA Sca_0221 230858 - 230241 - | putative deoxynucleoside kinase TERM 296 230487 - 230461 - G 71 -8.8 -3.13403 | overlap 230459 TTTCGTTTAGCAATA CGCTGTTTTAGA ACT TCTAAATCAGCA TCTAAGAAAATCACA TERM 297 230685 - 230715 + g 79 -10.6 -3.14051 | opp_overlap 230685, overlap 230683 ATTGCATAAAAAGAA CATTTCAGTTTGGA AAC TCCAAGTTGAGATG TCTTCGTAAAAATCA Sca_0222 230924 - 231403 + | putative deaminase Sca_0223 231618 - 232496 + | putative haloacid dehalogenase-like hydrolase Sca_0224 232563 - 233129 + | putative flavoprotein TERM 298 233143 - 233172 + T 74 -6.5 -4.40237 | opp_overlap 233143, overlap 233137 AATATTGATTGAAAA CACGTCATTCT TCTAAGTT GGAATGGCGTG TTTTAATATGTACTA TERM 299 233261 - 233229 - T 100 -13.6 -5.72616 | opp_overlap 233229 233224 233219 ATTTATATAAAAAAA CGCCTTATATCCAA TTCTT CTGGACATAAGGCG TGATATTTATATTAT TERM 300 233229 - 233261 + T 83 -10.7 -2.95284 | opp_overlap 233229, overlap 233224 233219 ATTTATATAAAAAAA CGCCTTATATCCA ATTCTTC TGGACATAAGGCG TGATATTTATATTAT Sca_0225 233822 - 233277 - | putative sugar phosphate isomerase Sca_0226 234456 - 233824 - | putative hexulose-6-phosphate synthase nagB 235291 - 234548 - | putative glucosamine-6-phosphate isomerase TERM 301 235353 - 235317 - H 82 -11 -2.87725 | opp_overlap 235321 235326 235327, overlap 235326 235328 CTCGAAAAATAATAG CAAAGAAAATAGGGGA CTTTT CCCCCTACTGTCTTTG AATACATTTCTATTA TERM 302 235344 - 235326 - H 82 -6.7 -4.99568 | opp_overlap 235321 235326 235327, overlap 235317 235328 TAATAGCAAAGAAAA TAGGGGA CTTTT CCCCCTA CTGTCTTTGAATACA TERM 303 235341 - 235328 - H 81 -8.1 -4.09862 | opp_overlap 235327 235326 235321, overlap 235326 235317 ATAGCAAAGAAAATA GGGGA CTTT TCCCC CTACTGTCTTTGAAT Sca_0228 235961 - 236320 + | hypothetical protein Sca_0229 236333 - 236998 + | putative LmbE-like protein family protein TERM 304 237273 - 237258 - g 72 -4 -5.06816 | gap 1, opp_overlap 237258 ACGCGTGAAGAAAAA GGCATCA ACA TGA-GCC GTATTTTAGAAAGTG Sca_0230 237015 - 237893 + | hypothetical protein TERM 305 238109 - 238144 + F 81 -6.3 -5.09685 | opp_overlap 238111, overlap 238112 ATAAAGCGACGTATA CAGCCCTATTCATTA CTGACT TAATGAATGGGGTTA TTTTTATGTATATTA TERM 306 238112 - 238141 + F 100 -10.2 -4.61353 | opp_overlap 238111, overlap 238109 AAGCGACGTATACAG CCCTATTCATTA CTGACT TAATGAATGGGG TTATTTTTATGTATA TERM 307 238564 - 238588 + G 74 -4.3 -5.06816 | overlap 238569 ATTAAAATTAGTATT TACATTTGCAA CCT TTGCAATTGCA TTTTTATTACGCCCT proP 238382 - 239821 + | proline/betaine transporter TERM 308 239841 - 239875 + T 100 -10.1 -5.93252 | gap 1 AAGAATCAATTTCAG CACGGGAAGTTTGCGC ATAT GCGTAG-CTTTCCGTG TTTTTTATTTTTCAC TERM 309 240448 - 240419 - T 80 -6.4 -4.99035 | overlap 240421 TGATGTATATAAAAA GTGGCATCACTC AATTTA GAGCAATGCCGC GCTTTAAAATTAATT thiD 241294 - 240464 - | putative phosphomethylpyrimidine kinase ung 241485 - 242150 + | putative uracil-DNA glycosylase Sca_0234 242143 - 242532 + | hypothetical protein Sca_0235 242617 - 243000 + | hypothetical protein Sca_0236 243067 - 244590 + | putative amino acid permease TERM 310 244647 - 244610 - f 80 -8.7 -3.8637 | gap 1, opp_overlap 244610 244614, overlap 244614 TTAGACTATAAAATA TAAAGCGATGAAAAC-CA AAT TGTGTTTTCATTGCTTCA TTTTTGTTCTTAGAA TERM 311 244610 - 244647 + F 100 -8.7 -5.29445 | gap 1, opp_overlap 244610 244614, overlap 244614 TTAGACTATAAAATA TAAAGCGATGAAAAC-CA AAT TGTGTTTTCATTGCTTCA TTTTTGTTCTTAGAA TERM 312 244643 - 244614 - f 79 -7.3 -4.52142 | gap 1, opp_overlap 244614 244610, overlap 244610 ACTATAAAATATAAA GCGATGAAAAC-CA AAT TGTGTTTTCATTGC TTCATTTTTGTTCTT TERM 313 244614 - 244643 + F 86 -9.5 -3.97836 | gap 1, opp_overlap 244610 244614, overlap 244610 ACTATAAAATATAAA GCGATGAAAAC-CA AAT TGTGTTTTCATTGC TTCATTTTTGTTCTT TERM 314 244731 - 244770 + F 81 -10.3 -3.09492 | GAATATATTGCGTCT TTTTGCCCCTTTAAT GCATTCAATA ATTAAAGGGGCAAAG TATTGGAATTAAAGA apl 244893 - 245516 + | alkaline phosphatase like protein TERM 315 245514 - 245569 + T 95 -11.6 -3.86106 | opp_overlap 245522, overlap 245522 AAGTCTAAATATGAC TAGTAAAACAACAACCGTCC-ACTTT AATAAA AGTGTTGGACGGTTGTTGTTTT-CTA TTTCGTGATTGATAT TERM 316 245562 - 245522 - T 79 -7.8 -4.32436 | gap 1, opp_overlap 245514 245522 ATATGACTAGTAAAA CAACAACCGTCC-AC TTTAATAAAAGT GTTGGACGGTTGTTG TTTTCTATTTCGTGA TERM 317 245522 - 245562 + T 100 -9.9 -4.82128 | gap 1, opp_overlap 245522, overlap 245514 ATATGACTAGTAAAA CAACAACCGTCC-ACTTT AATAAA AGTGTTGGACGGTTGTTG TTTTCTATTTCGTGA Sca_0238 246481 - 245690 - | hypothetical protein TERM 318 245751 - 245774 + g 72 -3.8 -5.0538 | opp_overlap 245756, overlap 245752 TAAACATCTTCTTCA GGCAAGTGCA GTTT TGCACTTACA TTTTTTAAAATAACA TERM 319 246667 - 246641 - R 100 -11 -4.24963 | GATAAGTATTGAAAA GAACCTACAATA AAT TATTGCAGGTCC ACCTTAATTGTTTAA Sca_0239 247135 - 246671 - | hypothetical protein Sca_0240 247928 - 247146 - | hypothetical protein TERM 320 248301 - 248311 + r 91 -5.4 -5.71983 | TAAATTAGAGGTGTT CCAT TAT ATGG TTTTTTTATCATTAC TERM 321 248427 - 248382 - R 78 -10.6 -2.71712 | gap 1, overlap 248381 GTTGGCTGTTGAAAG CT-GTTAACTGAGTAGCGACG GTTGG CATCGCTTCGCAGTTAACCAG AGAGATTGACAAGTA TERM 322 248516 - 248536 + r 90 -11.1 -3.60098 | ATACACGTGTGCGCT TGCAGGCAG ATA CTGCCGGCA TTTAGAGTGAGGGAT TERM 323 248726 - 248696 - R 100 -9.2 -4.75404 | gap 1, opp_overlap 248695 248696 AAATGGGAGCAAAAA GGAACTTGCGCTA AGTAAA TAG-GCAAGTTCC GTTCGTCTTTATACA TERM 324 248696 - 248726 + r 73 -9.2 -2.69719 | gap 1, opp_overlap 248696, overlap 248695 AAATGGGAGCAAAAA GGAACTTGCGCTA AGTAAA TAG-GCAAGTTCC GTTCGTCTTTATACA TERM 325 249269 - 249305 + r 100 -11.7 -4.11938 | opp_overlap 249269 ACGCGAATATGAAAA TGCCCCGGTAAAATGAA GGT TTTACTTTACCGAGGCA TTTATAATTAATTTG TERM 326 249305 - 249269 - R 100 -13.9 -4.43012 | opp_overlap 249269 ACGCGAATATGAAAA TGCCCCGGTAAAATGAA GGT TTTACTTTACCGAGGCA TTTATAATTAATTTG Sca_0241 250096 - 249347 - | hypothetical protein TERM 327 251036 - 251026 - g 70 -3.2 -5.02074 | overlap 251014 GTAGCTGCTAAAAAA GCAC CAG ATGC TAAAATTAAAGGCGA pta 250258 - 251247 + | putative phosphotransacetylase lplA 251247 - 252086 + | putative lipoate protein ligase TERM 328 252360 - 252346 - f 73 -5.8 -4.55544 | AATATATAAGCAAAA TGTTTA AAA TAAACA GAGTATATAAAGACA TERM 329 253289 - 253274 - g 78 -7.6 -4.33956 | CCTAAAATAGATAAA TTGCTG AATG CAGCAA AACAAGCTGGAGCGG mvaK1 252521 - 253444 + | mevalonate kinase mvaD 253451 - 254446 + | mevalonate diphosphate decarboxylase TERM 330 255166 - 255176 + G 75 -5.4 -4.86033 | opp_overlap 255166 GTAAAACGTTTAAAA TCAG ATC CTGA TTTTTATGGCCGTTT mvaK2 254443 - 255519 + | phosphomevalonate kinase TERM 331 255540 - 255528 - f 71 -3.3 -5.2015 | TCAATAATACAAAAA GCTGT CTA ACCGC GAAAAGGTGCACACG Sca_0247 255730 - 256074 + | hypothetical protein Sca_0248 256575 - 256342 - | hypothetical protein Sca_0249 256846 - 257412 + | putative multimeric flavodoxin WrbA family protein TERM 332 257440 - 257421 - f 71 -4.9 -4.7189 | opp_overlap 257421, overlap 257416 AAAATAGATATAAAA GCTGCTG CCATGT CAGCGGC TTTTTTGATAATGAA TERM 333 257421 - 257440 + F 86 -7.1 -5.1861 | opp_overlap 257421 257416 AAAATAGATATAAAA GCTGCTG CCATGT CAGCGGC TTTTTTGATAATGAA Sca_0250 257624 - 258100 + | putative acetyltransferase Sca_0251 258143 - 259441 + | putative phosphohydrolase Sca_0252 259510 - 260022 + | hypothetical protein TERM 334 260106 - 260050 - T 100 -18.3 -4.08064 | opp_overlap 260057, overlap 260053 260055 AATCTCTCGGCAAAA TTATATTGCATCCCCAAAGTCGAATTT GAA AAATTCGACTTTGGGGATGCTTTATTT ATGAGTAAAAACACA TERM 335 260103 - 260053 - T 100 -24.4 -3.08032 | opp_overlap 260057, overlap 260050 260055 CTCTCGGCAAAATTA TATTGCATCCCCAAAGTCGAATTT GAA AAATTCGACTTTGGGGATGCTTTA TTTATGAGTAAAAAC TERM 336 260101 - 260055 - T 100 -22.6 -3.09823 | opp_overlap 260057, overlap 260053 260050 CTCGGCAAAATTATA TTGCATCCCCAAAGTCGAATTT GAA AAATTCGACTTTGGGGATGCTT TATTTATGAGTAAAA TERM 337 260057 - 260099 + T 100 -29.6 -4.57482 | opp_overlap 260055 260053 260050 CGGCAAAATTATATT GCATCCCCAAAGTCGAATTT GAA AAATTCGACTTTGGGGATGC TTTATTTATGAGTAA Sca_0253 260823 - 260206 - | putative LysE type translocator protein Sca_0254 261573 - 262985 + | putative GntR family transcriptional regulator Sca_0255 263325 - 263573 + | hypothetical protein Sca_0256 263566 - 263835 + | hypothetical protein TERM 338 263865 - 263843 - f 95 -7.7 -5.48514 | ATCAATAAAGAAAAA GGACTGGAA TTATT TCCCAGCCC CTATAATTCAAAGGA TERM 339 264090 - 264123 + F 83 -6.9 -5.17054 | opp_overlap 264090, overlap 264083 CATGTTTTTTAAAAA GGATGATTTTCAT TTTTAATT GTGAAAATCGTCC TTTTTTCGGTATTCT Sca_0257 264322 - 265512 + | putative peptidase TERM 340 265612 - 265573 - f 100 -13 -4.26634 | gap 1, opp_overlap 265574 265576, overlap 265565 265574 AAAATAACTTTAAAA TCAGGGCATACGGTG-TGA ATT TCATCACTGTATGCCCTGT ATATATATGATATAA TERM 341 265611 - 265574 - f 100 -16.5 -3.14353 | gap 1, opp_overlap 265574 265576, overlap 265573 265565 AAATAACTTTAAAAT CAGGGCATACGGTG-TGA ATT TCATCACTGTATGCCCTG TATATATATGATATA TERM 342 265574 - 265611 + F 100 -18.7 -3.07534 | gap 1, opp_overlap 265574 265573 265565, overlap 265576 AAATAACTTTAAAAT CAGGGCATACGGTG-TGA ATT TCATCACTGTATGCCCTG TATATATATGATATA TERM 343 265576 - 265609 + F 100 -15.5 -3.08912 | gap 1, opp_overlap 265574 265573 265565, overlap 265574 ATAACTTTAAAATCA GGGCATACGGTG-TGA ATT TCATCACTGTATGCCC TGTATATATATGATA Sca_0258 265673 - 266089 + | hypothetical protein argS 266091 - 267755 + | putative arginyl-tRNA synthetase TERM 344 267770 - 267790 + F 100 -8.3 -5.9362 | opp_overlap 267773 AAACTGTATTCTCTA GAAGCACTT TTA ATGTGCTTC TTTTTTTATGTTTTC TERM 345 268394 - 268382 - g 84 -7.7 -4.57353 | GTTTATGATACAAAA CATCG TGT CGATG CGGTATTGAAAGATG Sca_0260 267887 - 268789 + | putative lipoprotein involved in iron transport Sca_0261 268795 - 269733 + | FecCD transport family protein TERM 346 269790 - 269775 - f 72 -6.8 -4.14724 | AAATAAAAGATTAAA GCATGC TCAT GCACGC AATTTATAGGAGAGA Sca_0262 269813 - 270556 + | haloacid dehalogenase-like hydrolase family protein Sca_0263 270531 - 271358 + | putative alpha/beta hydrolase TERM 347 271689 - 271679 - g 70 -5.4 -4.39426 | opp_overlap 271679, overlap 271688 GAGATTGGGAGAAAA CATC CAA GATG TCTTAAAAACACAAA Sca_0264 271524 - 272030 + | hypothetical protein TERM 348 272079 - 272038 - f 74 -6.1 -4.44151 | gap 1, opp_overlap 272044, overlap 272040 272044 AAAAATAATAAATAA TAGTAAGGGTTGCTGAAC AAACAGA ATTCAGCAACCCTTT-TA AATTTCTAAAGTAGA TERM 349 272044 - 272074 + F 100 -11.3 -4.39571 | opp_overlap 272040 272038 272044 AATAAATAATAGTAA GGGTTGCTGAA CAAACAGAA TTCAGCAACCC TTTTAAATTTCTAAA TERM 350 272074 - 272044 - f 95 -12 -3.53066 | opp_overlap 272044, overlap 272040 272038 AATAAATAATAGTAA GGGTTGCTGAAC AAACAGA ATTCAGCAACCC TTTTAAATTTCTAAA Sca_0265 272152 - 272865 + | hypothetical protein TERM 351 272915 - 272863 - T 100 -17.6 -4.24786 | gap 2, opp_overlap 272868, overlap 272868 TCCACAAGAGATAAA TG-AAATGAGGTCGAAATC-AACTAA AAT CTAGTTGGATTTCGACCTCATTTGCA TATAAAAAAAGACTT TERM 352 272909 - 272868 - T 100 -17.7 -4.20552 | gap 1, opp_overlap 272868, overlap 272863 AAGAGATAAATGAAA TGAGGTCGAAATC-AACTAA AAT CTAGTTGGATTTCGACCTCA TTTGCATATAAAAAA TERM 353 272868 - 272909 + T 100 -17 -3.70902 | gap 1, opp_overlap 272868 272863 AAGAGATAAATGAAA TGAGGTCGAAAT-CAACTA AAATC TAGTTGGATTTCGACCTCA TTTGCATATAAAAAA TERM 354 272950 - 272926 - T 95 -7.3 -5.71712 | TTGCATATAAAAAAA GACTTTCAA GCATTAG TTGAAAGTC CCCAATAAAATAGAA sarA 273340 - 272966 - | staphylococcal accessory regulator A Sca_0267 274588 - 273671 - | hypothetical protein TERM 355 274736 - 274695 - R 75 -4 -5.24531 | gap 2, opp_overlap 274675, overlap 274675 274697 ATTTTTGATAAAAAA TAGGAATTG-CATCCT-AGA ATAA TCTTAGGATAACAATTCCAA TAATGATACATACGA TERM 356 274734 - 274697 - R 74 -6.6 -4.25873 | gap 2, opp_overlap 274675, overlap 274675 274695 TTTTGATAAAAAATA GGAATTG-CATCCT-AGA ATAA TCTTAGGATAACAATTCC AATAATGATACATAC Sca_0268 275640 - 274708 - | hypothetical protein Sca_0269 275884 - 276114 + | hypothetical protein TERM 357 276118 - 276150 + T 73 -9.2 -2.50545 | opp_overlap 276119, overlap 276117 276116 GAAGTAGAATGAAAA ACCGAGCATACTCA AACCA TGAGTATACTCGGC AATTTGTTCTAAAAG TERM 358 276149 - 276119 - T 100 -14.9 -4.95876 | opp_overlap 276118 276117 276116 AAGTAGAATGAAAAA CCGAGCATACTCA AACCA TGAGTATACTCGG CAATTTGTTCTAAAA Sca_0270 276371 - 276159 - | hypothetical protein Sca_0271 276589 - 276386 - | hypothetical protein TERM 359 276923 - 276883 - H 71 -7.8 -3.4529 | opp_overlap 276884 276897, overlap 276886 276888 276897 ATAGTATTATTATAA CTAGACGATAAAAACTGA ATGAA TCAGCTTTTATCATCCAC TTCATATGATTGAAC TERM 360 276920 - 276886 - H 89 -11.7 -2.87243 | opp_overlap 276884 276897, overlap 276883 276888 276897 GTATTATTATAACTA GACGATAAAAACTGA ATGAA TCAGCTTTTATCATC CACTTCATATGATTG Sca_0272 276957 - 278996 + | sodium/hydrogen exchanger family protein TERM 361 279009 - 279047 + T 100 -13.5 -5.36441 | gap 1, opp_overlap 279009 TAATATATTAATAAA GCTGTAAAACAGATGCTT AGCG AAGCAT-TGTTTTGCAGC TTTTTTATGTAAAAA TERM 362 279047 - 279009 - T 100 -11.3 -4.329 | gap 1, opp_overlap 279009 TAATATATTAATAAA GCTGTAAAACAGATGCTT AGCG AAGCAT-TGTTTTGCAGC TTTTTTATGTAAAAA TERM 363 279065 - 279090 + T 95 -11.9 -3.53563 | opp_overlap 279065 TTTTATGTAAAAAAA GAGCCAGTCTT GGAG GGGACTGGCTC TTTGAAAAGCGATAT TERM 364 279090 - 279065 - T 100 -10.5 -5.47218 | opp_overlap 279065 TTTTATGTAAAAAAA GAGCCAGTC TTGGAGGG GACTGGCTC TTTGAAAAGCGATAT TERM 365 279111 - 279099 - T 77 -7.7 -4.07568 | CTGGCTCTTTGAAAA GCGAT ATC ATCGC ATTACCGCTTTTTCA Sca_0273 280177 - 279254 - | putative lipoprotein, AdhesinB family protein Sca_0274 281010 - 280174 - | putative ABC transporter, permease component Sca_0275 281659 - 281003 - | putative ABC transporter ATP-binding protein Sca_0276 281886 - 282542 + | putative metal dependent transcriptional regulator TERM 366 282583 - 282557 - f 85 -8.1 -4.55697 | opp_overlap 282557 ATTTTTAGAAATAAA GACGCAACT TTTTTGAGG AGTTGCGTC TTTTTCAATATACCT TERM 367 282557 - 282583 + F 100 -12.4 -4.71061 | opp_overlap 282557 ATTTTTAGAAATAAA GACGCAACTTTT TTG AGGAGTTGCGTC TTTTTCAATATACCT TERM 368 282770 - 282793 + G 76 -6 -4.54205 | CTTTTTAGTGACCAT GATAGGTGCT TTTT GGCATCTGTC TTTATTTCATATGAT Sca_0277 282696 - 283400 + | putative PA-phosphatase related membrane protein TERM 369 283436 - 283406 - T 95 -6.8 -6.09196 | opp_overlap 283408, overlap 283407 283408 TGTAAAATAAAAAAA TGGCTTCGCAGGTA CAA TACTTGCGAAGCTT TTTCATATCAAATAT TERM 370 283435 - 283407 - T 95 -10.3 -4.23077 | opp_overlap 283408, overlap 283406 283408 GTAAAATAAAAAAAT GGCTTCGCAGGTA CAA TACTTGCGAAGCT TTTTCATATCAAATA TERM 371 283434 - 283408 - T 100 -13.8 -3.11406 | opp_overlap 283408, overlap 283407 283406 TAAAATAAAAAAATG GCTTCGCAGGTA CAA TACTTGCGAAGC TTTTTCATATCAAAT TERM 372 283408 - 283434 + T 100 -16 -4.80882 | opp_overlap 283408 283407 283406 TAAAATAAAAAAATG GCTTCGCAGGTA CAA TACTTGCGAAGC TTTTTCATATCAAAT Sca_0278 283935 - 283444 - | putative N-acetyltransferase TERM 373 283602 - 283635 + g 90 -9.1 -4.4009 | gap 1, opp_overlap 283602 GGTAGTGAATATTAA GTGATGCAGCTTCTTG TTC TAA-AAGCTGCATTAC TTTTGTGCCATAACC TERM 374 283635 - 283602 - G 73 -9 -3.38072 | opp_overlap 283602 GGTAGTGAATATTAA GTGATGCAGCTTCT TGTTCT AAAAGCTGCATTAC TTTTGTGCCATAACC Sca_0279 284699 - 283953 - | hypothetical protein maa 285337 - 284780 - | putative maltose O-acetyltransferase tagA 285455 - 286231 + | putative teichoic acid biosynthesis protein TERM 375 286247 - 286280 + F 85 -4.5 -5.63504 | opp_overlap 286247 AGAATAGAAATATTA CTGCTTTGAAGGGTC TGAA GACGAATCGAAGCAG TTTTTTTATGGAATT TERM 376 286512 - 286530 + F 70 -9 -2.63112 | opp_overlap 286506 286514, overlap 286514 ATAAATAGATTGATA TATCGTAA TGA TTACGATA TACTATAAACAATTT TERM 377 286796 - 286833 + F 100 -14.3 -6.11229 | opp_overlap 286789 286796, overlap 286780 GTACACGAGCAGAAA CTGCACTCGTCCCTTTA TATC TAAAGGGATAGGTGCAG TTTTTTTATTTTAAT TERM 378 286833 - 286796 - f 100 -12.1 -4.00782 | opp_overlap 286780 286796, overlap 286789 GTACACGAGCAGAAA CTGCACTCGTCCCTTTA TATC TAAAGGGATAGGTGCAG TTTTTTTATTTTAAT TERM 379 287035 - 287016 - g 73 -9.4 -2.90901 | AGATGGTGAATTACA CGATTTGA ATCA TCAAATCG AGAAAGATTGCCAAG TERM 380 288202 - 288186 - g 85 -9.5 -4.10007 | opp_overlap 288185 288184 288188 ACAATCTCTTGAAAA CATGTTG AAT CAACATG GCTTTAAATATACAG thrS 286873 - 288780 + | threonyl-tRNA synthetase TERM 381 288790 - 288824 + F 100 -13.1 -5.25803 | opp_overlap 288790 AAATAAAGATCCAAA TAGGCGTTTATTCCT GAAAA AGGGATAAACGTCTA TTTTTTATGACACTT TERM 382 288824 - 288790 - f 80 -8.7 -3.85835 | opp_overlap 288790 AAATAAAGATCCAAA TAGGCGTTTATTCCT GAAAA AGGGATAAACGTCTA TTTTTTATGACACTT TERM 383 289081 - 289057 - g 70 -6.4 -4.11773 | opp_overlap 289057 AAATATTTTGCAAAA GCAGGTCGTA TTCCG TACTACCCGC TTATTATTGATCACG TERM 384 289899 - 289910 + G 73 -5.8 -4.44046 | overlap 289895 TATGGGTAGTTTAGA TGCG CCTG CGCA TTTATTTACAATGGG Sca_0283 289006 - 290343 + | putative aminotransferase Sca_0284 290357 - 291448 + | hypothetical protein TERM 385 291515 - 291480 - T 90 -7 -5.50925 | gap 1, opp_overlap 291482, overlap 291482 AATGAATATAAAAAA TACGCGTTGCAG-TA GAAAGGG TAGCTGCAACGCGTT TTTGTTTAAGGGTTA TERM 386 291513 - 291482 - T 100 -9.6 -4.36863 | gap 1, opp_overlap 291482, overlap 291480 TGAATATAAAAAATA CGCGTTGCAG-TA GAAAGGG TAGCTGCAACGCG TTTTTGTTTAAGGGT TERM 387 291482 - 291513 + T 100 -9.6 -5.27938 | gap 1, opp_overlap 291482 291480 TGAATATAAAAAATA CGCGTTGCAG-TA GAAAGGG TAGCTGCAACGCG TTTTTGTTTAAGGGT TERM 388 291629 - 291660 + T 72 -8.8 -2.91126 | TTATTGAGGGTATGT GCTCAGATTGAAGG GCTA TTTACAATCTGAGC TGTCGTGTGATTTAT TERM 389 291676 - 291693 + T 77 -7.1 -4.23758 | TGTCGTGTGATTTAT GAGATTA TTGT TAATCTC TTTTCCATATACAAT Sca_0285 292796 - 292392 - | hypothetical protein TERM 390 293131 - 293103 - R 74 -7.7 -3.79043 | opp_overlap 293090, overlap 293090 TATGAGTAATTCAAA CTCATTTATAT TCAAAAT ATATAAATGAG TAGAAAGATTTATTT tagH 293938 - 293141 - | teichoic acid translocation ATP-binding protein tagG 294249 - 295052 + | teichoic acid translocation permease protein TERM 391 295072 - 295099 + F 100 -11.4 -5.40072 | opp_overlap 295072 TGATAGATAAGATAA CTCCAAGCATGT TTTC ACGTGTTTGGAG TTTTTTTAAAAGAAA TERM 392 295745 - 295729 - g 100 -8.1 -5.29782 | TAGAGGCACAAAAAA TTGCTTT GAA AAAGCAA TACGGAATCGAAGGC tagB 295134 - 296228 + | teichoic acid biosynthesis protein B tagX 296228 - 297286 + | teichoic acid biosynthesis protein X TERM 393 297284 - 297321 + F 71 -7.4 -3.73042 | gap 1, opp_overlap 297284 297292 297295, overlap 297292 AAAGCTTTGAAAAGA TA-AAAAAATAGGCCAT TTAAT ATGGCTTATTTTTTATA TATTTTCATACAGAG TERM 394 297312 - 297292 - f 89 -4 -5.9362 | opp_overlap 297292 297284, overlap 297284 297295 GAAAAGATAAAAAAA TAGGCCAT TTAAT ATGGCTTA TTTTTTATATATTTT TERM 395 297292 - 297312 + F 90 -6.2 -5.53079 | opp_overlap 297284 297292 297295, overlap 297284 GAAAAGATAAAAAAA TAGGCCAT TTAAT ATGGCTTA TTTTTTATATATTTT TERM 396 297558 - 297542 - g 83 -2.3 -5.95286 | ATTAAAAATAAAAAA TCATACT ACA ATTATGA ACAACGTAAAATGAT tagD 297401 - 297799 + | teichoic acid biosynthesis protein D TERM 397 297822 - 297878 + T 85 -5.5 -5.47218 | gap 3 ATGAAATAAATAAAA GAGCTCATACACAGTACCTCTT-ACAGA CTAG TTTGTCAGGAGG-ACTGA-TGTGAGCTC TTTTTTTGGCTGCAA pbp4 299183 - 297894 - | penicillin binding protein 4 Sca_0292 299414 - 301144 + | ATP-binding cassette transporter A TERM 398 301152 - 301182 + F 100 -11.3 -5.63645 | opp_overlap 301149 CAGATTAAATCAGCA TCGCTTCCGAA TAGATGAAT TTCGGAAGCGA TTTTTTATGTTTTGC TERM 399 302141 - 302129 - g 73 -6.9 -4.1023 | AACCTTAAAGAAGAA GGCGC ACA ACGCC AACCATTCTTCTCAT Sca_0293 301442 - 302671 + | putative sodium dependent nucleoside transporter TERM 400 302687 - 302719 + F 100 -10.7 -5.37043 | GTCGATATTTTTATA GCGCAATGTTCAACT TCA AGTTGGATGTTGTGC TTTTTTATATGCAGT TERM 401 302866 - 302813 - f 73 -5.7 -4.52781 | gap 2, opp_overlap 302819, overlap 302819 GAAGTATAATGAAAA TGGAAAGACCAAGTATATGAATGTG GGGAGA CACAATCAT-TACTTGGTCTTTT-A CGGGAAATGAATTTG TERM 402 302819 - 302861 + F 100 -11.6 -4.08216 | gap 1, opp_overlap 302813 302819 TAATGAAAATGGAAA GACCAAGTATATGAATGTG GGGAGA CACAATCAT-TACTTGGTC TTTTACGGGAAATGA TERM 403 302861 - 302819 - f 100 -11.6 -3.96452 | gap 1, opp_overlap 302819, overlap 302813 TAATGAAAATGGAAA GACCAAGTATATGAATGTG GGGAGA CACAATCAT-TACTTGGTC TTTTACGGGAAATGA TERM 404 302973 - 302961 - f 71 -5.5 -4.40333 | opp_overlap 302961, overlap 302969 TGTAAACAACACAAA GGAGA TAA CCTCC TTAATCTATTGACTA TERM 405 302994 - 302969 - f 81 -9.1 -3.675 | opp_overlap 302961, overlap 302961 ACACAAAGGAGATAA CCTCCTTAATC TATT GACTAAGGAAG TTGAAATTTATTATA Sca_0294 303156 - 303992 + | hypothetical protein TERM 406 303999 - 304019 + F 100 -9.7 -5.34055 | opp_overlap 303999, overlap 304016 GACGAATAATGTAAA TCCGAGGGA ATA TGCCTCGGA TTTTTTCGTATTTAT TERM 407 304019 - 303999 - f 86 -9.7 -3.8646 | opp_overlap 303999 304016 GACGAATAATGTAAA TCCGAGGGA ATA TGCCTCGGA TTTTTTCGTATTTAT fhuC 304305 - 305108 + | ferrichrome transport ATP-binding protein TERM 408 305315 - 305337 + G 79 -10.6 -3.20382 | TAAGTGAGATTCGGA TACCGCGC GATTTAG GCGCGGTA TTAGTCGGTATGGCA fhuB 305119 - 306126 + | ferrichrome transport permease fhuG 306123 - 307139 + | ferrichrome transport permease Sca_0298 307258 - 307758 + | hypothetical protein TERM 409 307821 - 307788 - f 71 -4.7 -4.84262 | opp_overlap 307794, overlap 307789 307794 GAATAATGAACAAAA GCAAAAGAACATCTC AATG AAGATGTTCTTTTTT TATGGGCGGGTCGTT TERM 410 307820 - 307789 - f 73 -8.2 -3.48931 | opp_overlap 307794, overlap 307788 307794 AATAATGAACAAAAG CAAAAGAACATCTC AATG AAGATGTTCTTTTT TTATGGGCGGGTCGT TERM 411 307794 - 307815 + F 90 -7.4 -5.60993 | opp_overlap 307794 307789 307788 TGAACAAAAGCAAAA GAACATCT CAATGA AGATGTTC TTTTTTTATGGGCGG TERM 412 307815 - 307794 - f 87 -8.1 -4.78029 | opp_overlap 307794, overlap 307789 307788 TGAACAAAAGCAAAA GAACATCTC AATG AAGATGTTC TTTTTTTATGGGCGG TERM 413 308541 - 308556 + G 93 -7.6 -5.07971 | AATAGTACGTGCGCT TGGTGT GGTT ACACCA TTTTTAATTGTTTTA Sca_0299 308113 - 309180 + | hypothetical protein TERM 414 309300 - 309278 - f 78 -10.6 -2.60977 | opp_overlap 309278, overlap 309277 309276 TTCTAAAAAATAAGG GCGCAGCATT TTA AATGCTGTGC TTTTTTACATATAAT TERM 415 309278 - 309300 + F 100 -12.8 -5.13473 | opp_overlap 309277 309276 309278 TTCTAAAAAATAAGG GCGCAGCATT TTA AATGCTGTGC TTTTTTACATATAAT Sca_0300 309405 - 310427 + | putative esterase TERM 416 310469 - 310448 - T 77 -8.7 -3.54543 | opp_overlap 310448 ATTGATTTCTGTAAA TACCCGGAC ACTT GTCTGGGTA TTTTTAAATAGGTAA TERM 417 310448 - 310469 + T 100 -10.9 -4.67353 | opp_overlap 310448 ATTGATTTCTGTAAA TACCCGGAC ACTT GTCTGGGTA TTTTTAAATAGGTAA Sca_0301 311066 - 310560 - | putative N-acetyltransferase Sca_0302 311275 - 311955 + | putative response regulator protein Sca_0303 311942 - 312985 + | putative two-component sensor histidine kinase TERM 418 312965 - 312980 + F 71 -7.6 -3.5394 | overlap 312976 GCACGTGAAGCTGAA GTGACA ACTT TGTCAC TTTAAAAGGACGTTT Sca_0304 313078 - 313839 + | putative ABC transporter ATP-binding protein TERM 419 314200 - 314212 + G 76 -3.3 -5.3321 | AATTGTTGGTGGTCT GCTTG GTT CACGC TTTTTATTATTAATT Sca_0305 313829 - 315733 + | putative ABC transporter permease TERM 420 315743 - 315774 + F 100 -10.4 -5.72616 | opp_overlap 315743 ATCTAGCATTTTAAA TACTAAGAGAGCTA CTAT TAGTTCTTTTAGTA TTTTTTTGTGTAAAT TERM 421 316013 - 316033 + F 72 -6.9 -4.15235 | overlap 316001 316011 AGCTTACATACGAGG GTATGAAAC TTA GTTTCTTAC TATTTTTTAGAAATT Sca_0306 316127 - 316744 + | hypothetical protein TERM 422 317011 - 317031 + G 80 -6.1 -5.06103 | overlap 317008 317002 317013 GTCTTGTTGTTGTGC TGGCAGCAA TTT TTGCCGCTA TTTTTTGGAACTTGT TERM 423 317013 - 317029 + G 70 -6.5 -4.15235 | overlap 317008 317002 317011 CTTGTTGTTGTGCTG GCAGCAA TTT TTGCCGC TATTTTTTGGAACTT Sca_0307 316758 - 317765 + | putative phosphate transporter protein TERM 424 317770 - 317821 + T 100 -24.8 -4.14598 | opp_overlap 317776, overlap 317776 317779 TTTTTATATAGTTAA TATAAATAAGAACGGGCGCAGCAA TGAT TTGCTGCGCCCGTTCTTATTTGCG TTTGATTTAATTAAC TERM 425 317815 - 317776 - T 100 -28.2 -4.22678 | opp_overlap 317770 317776 317779 TATAGTTAATATAAA TAAGAACGGGCGCAGCAA TGAT TTGCTGCGCCCGTTCTTA TTTGCGTTTGATTTA TERM 426 317776 - 317815 + T 100 -28.2 -3.90943 | opp_overlap 317776, overlap 317770 317779 TATAGTTAATATAAA TAAGAACGGGCGCAGCAA TGAT TTGCTGCGCCCGTTCTTA TTTGCGTTTGATTTA TERM 427 317779 - 317812 + T 100 -25.5 -4.05629 | opp_overlap 317776, overlap 317776 317770 AGTTAATATAAATAA GAACGGGCGCAGCAA TGAT TTGCTGCGCCCGTTC TTATTTGCGTTTGAT Sca_0308 318665 - 317832 - | Aldo/keto reductase family protein TERM 428 318686 - 318696 + r 72 -2.6 -5.47159 | overlap 318686 ATCACCTTTCATGTG TAAA AGT TTTA TTTTTATTTGTTCAG Sca_0309 319992 - 318814 - | major facilitator family protein Sca_0310 320137 - 320475 + | putative transcriptional regulator Sca_0311 321345 - 320530 - | putative peptidoglycan hydrolase Sca_0312 321693 - 322322 + | putative integral membrane protein that interacts with FtsH TERM 429 322400 - 322355 - f 100 -13.6 -4.90455 | opp_overlap 322355 322356, overlap 322356 AGATATTCACAAAAA TCAGTTGCTGATTACTATAT ATATTA ATAAAGTAATCAGCAACTGT TTTTTGTATTTCTGA TERM 430 322356 - 322399 + F 100 -17.1 -5.59879 | opp_overlap 322355 322356, overlap 322355 GATATTCACAAAAAT CAGTTGCTGATTACTATAT ATATTA ATAAAGTAATCAGCAACTG TTTTTTGTATTTCTG TERM 431 322399 - 322356 - f 100 -17.1 -3.53188 | opp_overlap 322355 322356, overlap 322355 GATATTCACAAAAAT CAGTTGCTGATTACTATAT ATATTA ATAAAGTAATCAGCAACTG TTTTTTGTATTTCTG Sca_0313 322807 - 323685 + | truncated AraC/XylS family transcriptional regulator (fragment 1) Sca_0314 323697 - 324011 + | truncated AraC/XylS family transcriptional regulator (fragment 2) TERM 432 324350 - 324337 - g 78 -5.3 -4.91109 | TCTCTATGATAAAAA TGGTT TAAA AACCA CGCTTTACTTTTTGT TERM 433 324433 - 324412 - g 76 -5.9 -4.71426 | CTTTTATGAAGAAAA GTCTTATGT CATT ACAGAAGAC GATGAACGTTTTGCA TERM 434 324636 - 324606 - g 75 -5.7 -4.78753 | gap 1, opp_overlap 324598 324606 GTAATATTAATAAAA TTATATCTC-CTAA ATTA TTAGAGAGATACAA TTGGTCTGAATATTT Sca_0315 324053 - 324784 + | truncated AraC/XylS family transcriptional regulator (fragment 3) Sca_0316 324944 - 325303 + | putative transcriptional regulator, MarR type TERM 435 325362 - 325385 + F 100 -9.6 -5.08824 | opp_overlap 325364 TATAATACCGTAGGA GATAGTCGCT TAAT GGCGGCTATC TTTTTTAAATAAAAA TERM 436 325629 - 325616 - g 70 -6.7 -4.07885 | TATGTTGCTGCAAAA TCAGG TGAA CCTGA TCCAGAATCTAACCA Sca_0317 325511 - 326230 + | hypothetical protein TERM 437 326530 - 326547 + G 95 -8.5 -4.99435 | opp_overlap 326529, overlap 326538 ACGTATTACAACATG TTGTTCC TGCA GGAACAA TTTTTGCTTCTTCCA Sca_0318 326232 - 326714 + | hypothetical protein TERM 438 326764 - 326717 - f 91 -8.7 -4.78848 | gap 1, opp_overlap 326722, overlap 326722 TGCTGAAATATAAAA TAAAACACGTTGCCT-TGATAA TTTTT TCTTCAAAGGCAACGTGTTTTT TAGGATTAAATCATG TERM 439 326759 - 326722 - f 100 -8.6 -5.2894 | gap 1, opp_overlap 326722, overlap 326717 AAATATAAAATAAAA CACGTTGCCT-TGATAA TTTTT TCTTCAAAGGCAACGTG TTTTTTAGGATTAAA TERM 440 326722 - 326759 + F 81 -6.5 -5.09426 | gap 1, opp_overlap 326717 326722 AAATATAAAATAAAA CACGTTGCC-TTGA TAATTTTTTCT TCAAAGGCAACGTG TTTTTTAGGATTAAA Sca_0319 326944 - 327516 + | hypothetical protein TERM 441 327574 - 327601 + F 71 -2 -5.45813 | gap 1, overlap 327566 AGTTTATTATGGGGG CCATGCTGTTAGT TTT ATTG-CTGCATGG TTTTATTTTTTAGTA Sca_0320 327648 - 328514 + | LysR family regulatory protein TERM 442 328542 - 328578 + F 100 -15.5 -5.24531 | opp_overlap 328542 328544 AATGTAGTTGAAGTA CACCTTGTTATTGGATT TGA AATCTAATAATAAGGTG TTTTTTATAGGGAAT TERM 443 328578 - 328542 - f 82 -11.1 -2.7386 | opp_overlap 328542, overlap 328544 AATGTAGTTGAAGTA CACCTTGTTATTGGATT TGA AATCTAATAATAAGGTG TTTTTTATAGGGAAT Sca_0321 328689 - 329885 + | putative sugar efflux transporter TERM 444 329956 - 329973 + G 71 -7.1 -3.82604 | TTGTCGTCGCGTTTG TTGGTTT GATT AAACCAA TTATTCCTTCAATGC Sca_0322 329901 - 330386 + | hypothetical protein TERM 445 330414 - 330455 + T 100 -9.4 -4.79352 | gap 1, opp_overlap 330414 AATTAAGTTAATAAA CTCCCGCTAGAGCAGACAC TTTTT GTG-CAACTCAAGCGGGAG TTTTGTTATGCGTAA TERM 446 330455 - 330414 - T 100 -11.6 -4.26953 | gap 1, opp_overlap 330414 AATTAAGTTAATAAA CTCCCGCTAGAGCAGACAC TTTTT GTG-CAACTCAAGCGGGAG TTTTGTTATGCGTAA TERM 447 330491 - 330503 + T 95 -6.3 -5.98675 | opp_overlap 330490 GTTCTGGTAAATCAG CATAG ACG CTATG TTTTTTCTTTTTATA Sca_0323 331200 - 330514 - | hypothetical protein TERM 448 331564 - 331549 - g 70 -5.4 -4.42512 | AAAACAGAAAAAAGA TACGCA AGAA CGCGTA GATAAACTTCAAAAT TERM 449 331701 - 331685 - g 72 -3.7 -4.94262 | GATACCAAAAACAAA CCTGA AAATGCA TCAGG TCAAAATCAAACAGC Sca_0324 331388 - 331831 + | hypothetical protein TERM 450 331963 - 331946 - g 71 -4.2 -4.73635 | TAGAAGGTAAGAAAA TGACTT TAAAAC AAGTCA GCGAAGCAATTGAAA Sca_0325 331906 - 332217 + | hypothetical protein Sca_0326 332445 - 332990 + | putative N-acetyltransferase TERM 451 332992 - 333023 + T 81 -8.1 -4.15565 | gap 1, opp_overlap 332992 GATTGAATGAATAAA GAGGAAGCA-ACCT TTGAT AGGAGTGCTTCCTC TTTTAGCATGATAGG TERM 452 333023 - 332992 - T 81 -8.1 -4.33621 | gap 1, opp_overlap 332992 GATTGAATGAATAAA GAGGAAGCA-ACCT TTGAT AGGAGTGCTTCCTC TTTTAGCATGATAGG Sca_0327 333669 - 333097 - | lysine decarboxlyase family protein Sca_0328 334127 - 333687 - | hypothetical protein TERM 453 334131 - 334151 + r 71 -4.7 -4.79053 | ACCATCAATCATTAC CCGAGTC ATTTATA GATTCGG TTTCTTTTCATATTT Sca_0329 334841 - 334140 - | hypothetical protein TERM 454 334905 - 334923 + r 95 -10.4 -4.24002 | opp_overlap 334905 ATTATTTGCATTAAA CGATATAC TCA GTATATCG TTTTAGACTTTAAAC TERM 455 334923 - 334905 - R 89 -10.4 -3.73953 | opp_overlap 334905 ATTATTTGCATTAAA CGATATAC TCA GTATATCG TTTTAGACTTTAAAC TERM 456 335003 - 334982 - R 100 -10.2 -5.3658 | opp_overlap 334984 AGTATAAAAATAAAA GACGTCGA AATAAA TCGACGTC TTAGAGATACTTTAA bacA 335911 - 335021 - | putative undecaprenol kinase TERM 457 336238 - 336221 - H 72 -2.7 -5.36441 | TTTTGACACAAAAAA GGACA GCTATTAA TGTCC TGAACTTCTAAAATT TERM 458 336273 - 336311 + H 100 -9.7 -4.5002 | opp_overlap 336271 336268 336283 TTTAAAAACACAGTG GGTGGAACAAGTATG CATATAACA CATACGTGTTCCGCC TTTGTTGTGTATTTT TERM 459 336727 - 336737 + G 73 -5.4 -4.58283 | opp_overlap 336727 GTTTTATCAAGACTA CTTG CCG CAAG TTTTTAAGGCAGTTA cydD 336359 - 337999 + | putative ABC transporter required for expression of cytochrome bd, CydD cydC 337996 - 339681 + | putative ABC transporter required for expression of cytochrome bd, CydC TERM 460 339688 - 339709 + T 100 -11.7 -5.40072 | opp_overlap 339691 339706 339707, overlap 339701 AATGAATAGTTGTAA GAACTTTCC GTTT GGAAAGTTC TTTTTTTGCAACAAA TERM 461 339706 - 339691 - T 72 -7.6 -3.65201 | opp_overlap 339688 339701 GAATAGTTGTAAGAA CTTTCC GTTT GGAAAG TTCTTTTTTTGCAAC TERM 462 339753 - 339729 - T 100 -8.7 -5.7946 | opp_overlap 339701 339729, overlap 339706 339707 TTTGCAACAAAAAAA GACAAATCCTA ATT CAGAATTTGTC TTTCCTACGCTCAAG Sca_0333 340266 - 339826 - | MarR family regulatory protein TERM 463 341018 - 341006 - g 71 -4.9 -4.64676 | TTATTGTGAACAAAA TTGAT TTA ATCAA TGATGAAGAACAAAA Sca_0334 340516 - 341445 + | putative cobalamin synthesis protein TERM 464 341715 - 341735 + G 71 -6.9 -3.92641 | opp_overlap 341715 AAAGATTGGCAAAAA TCGACTCAA GAA TTGAATCGA TTTATCCATGAACTT TERM 465 341735 - 341715 - g 90 -9.1 -4.62904 | opp_overlap 341715 AAAGATTGGCAAAAA TCGACTCAA GAA TTGAATCGA TTTATCCATGAACTT Sca_0335 341634 - 342542 + | alpha/keto reductase family protein TERM 466 342681 - 342699 + G 75 -8.9 -3.53779 | TTTACAACAATTTTT GCACAAC CGACT GTTGTGC TTACTCTTTTCGGCA Sca_0336 342573 - 342863 + | hypothetical protein TERM 467 342886 - 342915 + F 100 -10.9 -4.4261 | opp_overlap 342885 GAATACAAAGAGGAC TTACACCTGAGTA GCAT TGCTTAGGTGTAA TTTTCATATTAGAGG Sca_0337 342937 - 343560 + | DedA family protein TERM 468 343559 - 343595 + F 71 -2.3 -5.4505 | opp_overlap 343562 343565, overlap 343563 343585 AATCAGATAGTAAGT AAGGGACTTGAACAC TGTTAAT GGGTTCAAGTCTTTC TTTTTTATTAAGGAA TERM 469 343563 - 343591 + F 86 -7.5 -5.20735 | opp_overlap 343562 343565, overlap 343559 343585 AGATAGTAAGTAAGG GACTTGAACAC TGTTAAT GGGTTCAAGTC TTTCTTTTTTATTAA TERM 470 343873 - 343852 - g 70 -2.9 -5.18355 | CCTAAAAATGAAAAA CCAGCACGT GGTA AGGCACTGG ATATTAAAGAAAGCG mdh 343732 - 344667 + | putative malate dehydrogenase TERM 471 344689 - 344710 + F 95 -6.6 -5.67529 | opp_overlap 344689 TATGAAGTGATTTAA GTGGGCTT ATATAA AAGCTCAC TTTTTATTTTTCATT TERM 472 346039 - 346028 - g 71 -4.4 -4.76193 | AAGTAGAAGATAAAA TTCC ATGG GGAA CAATTATTGTCTTTG Sca_0339 344956 - 346494 + | sodium/sulphate symporter family protein TERM 473 346538 - 346516 - T 86 -7.2 -5.31072 | opp_overlap 346535 346536, overlap 346510 346535 ATAAGACAATAAAAA CTTACTTTTT AAT AAAAAATAAG CGCACAGATCAGTTT TERM 474 346535 - 346574 + T 88 -8.7 -4.41348 | gap 1, opp_overlap 346516 346535 346538, overlap 346536 346538 CTTTTTAATAAAAAA TAAGCGCACAGATCAGTT TTGTT AACTG-TCTGTGCGCTGC TTTGTTTAAAAAACA TERM 475 346574 - 346535 - T 100 -8.7 -5.4505 | gap 1, opp_overlap 346535 346536 346538, overlap 346516 346538 CTTTTTAATAAAAAA TAAGCGCACAGATCAGTT TTGTT AACTG-TCTGTGCGCTGC TTTGTTTAAAAAACA TERM 476 346536 - 346573 + T 100 -12.2 -3.24488 | gap 1, opp_overlap 346516 346535 346538, overlap 346535 346538 TTTTTAATAAAAAAT AAGCGCACAGATCAGTT TTGTT AACTG-TCTGTGCGCTG CTTTGTTTAAAAAAC TERM 477 346538 - 346571 + T 100 -14.8 -3.18452 | gap 1, opp_overlap 346535 346538, overlap 346536 346535 TTTAATAAAAAATAA GCGCACAGATCAGTT TTGTT AACTG-TCTGTGCGC TGCTTTGTTTAAAAA TERM 478 346571 - 346538 - T 100 -14.8 -4.81306 | gap 1, opp_overlap 346538 346536 346535, overlap 346535 TTTAATAAAAAATAA GCGCACAGATCAGTT TTGTT AACTG-TCTGTGCGC TGCTTTGTTTAAAAA Sca_0340 347469 - 346852 - | hypothetical protein TERM 479 348012 - 348024 + G 88 -7.7 -4.87389 | TGGCCTCGTTCTTTT CTCAG TTT CTGAG TTTATTTTTGCGATG norA 347779 - 348945 + | quinolone resistance protein NorA TERM 480 348949 - 348980 + F 80 -9 -3.79345 | gap 1, opp_overlap 348949 348952, overlap 348952 CAAGAAGGTTGAATA TAAGGTGTGAAACAT TAA ATGTTTCA-GCCTTA TTATCTGTTGTTATT TERM 481 349174 - 349196 + F 70 -6.4 -4.07568 | opp_overlap 349174 349176, overlap 349188 AGCTTATGAAGATGA GAGAAAGT AATTAAG ACTTTCTC TTTTAAAGGGGGAAG TERM 482 349188 - 349213 + F 84 -6.9 -5.19212 | opp_overlap 349176 349174, overlap 349174 AGAGAAAGTAATTAA GACTTTCTCTT TTAA AGGGGGAAGTC TTTTTTCATCGTGAT TERM 483 349304 - 349289 - g 73 -3.4 -5.22312 | opp_overlap 349289 ATTGACATGAAAAAA TTAATA AGCG TATTAA CTTTAGTAGTCATCG TERM 484 350085 - 350063 - g 76 -3.5 -5.28176 | TTCATTGAGAAAAAA TATGGAAAA GATGT TGTTCCATA TGAAGCAAAATAACT Sca_0342 349280 - 350098 + | putative lipoprotein TERM 485 350835 - 350846 + G 76 -5.8 -4.67982 | GATCAGCTGTACAGT TGGC ACAA GCCA TTTTATTGGATGAAC ldh 350120 - 351073 + | putative L-lactate dehydrogenase TERM 486 351138 - 351171 + F 93 -8.3 -5.07652 | opp_overlap 351138 AAATGAATCAAGAAA TACGTACTTTACTTT AATA ATGGTGAAGTACGTA TTTTATTTTGAGAAA TERM 487 351237 - 351227 - f 71 -2.4 -5.38047 | opp_overlap 351227 CAGTTACATAAAAAA GGAG TGT CACC TTTTCAAAAGTATCT Sca_0344 351371 - 351730 + | hypothetical protein TERM 488 351752 - 351762 + F 78 -3.2 -5.60993 | ATGTTTACATAATGT CAGG CGC CTTG TTTTTTTGTCCAAAA TERM 489 352309 - 352297 - g 76 -7.7 -4.02132 | GGCTAAAGTGACAAA CGCTA AAA TAGCG GATGTAGCCAATCAT Sca_0345 351848 - 352336 + | YbaK family protein TERM 490 352335 - 352363 + F 79 -5.4 -5.24129 | gap 1, overlap 352338 ATCATCATACTAATT GAGGAAGGTGGAC AAAA GTTCATCTTC-TC TTTTTTATCACAAAA TERM 491 352338 - 352361 + F 81 -8.2 -4.25873 | overlap 352335 ATCATACTAATTGAG GAAGGTGGAC AAAA GTTCATCTTC TCTTTTTTATCACAA Sca_0346 352463 - 353227 + | putative transcriptional regulators of sugar metabolism fruB 353224 - 354144 + | putative fructose 1-phosphate kinase fruA 354151 - 356109 + | putative fructose specific permease Sca_0349 356529 - 357938 + | predicted membrane protein with CBS domains TERM 492 357950 - 357972 + F 95 -8.5 -5.63517 | opp_overlap 357950 TTAATACTTTTACAA CCAGTACTT AAAAA GAGTACTGG TTTTTTGTTTAGACA Sca_0350 358107 - 358535 + | hypothetical protein TERM 493 358548 - 358577 + F 89 -8.7 -4.65895 | gap 1, opp_overlap 358548 TAATGCAATGTAAAA TGAAGTTGGG-AGA CAA TCAACCCAACTTCA TTTTTAAATCAAACA TERM 494 358577 - 358548 - f 84 -8.7 -4.29845 | gap 1, opp_overlap 358548 TAATGCAATGTAAAA TGAAGTTGGG-AGA CAA TCAACCCAACTTCA TTTTTAAATCAAACA Sca_0351 358612 - 359091 + | hypothetical protein TERM 495 359110 - 359096 - gf 83 -7.2 -4.79223 | GTAGACGATGAAAAA GATATC GTA GATATC TGCCAAACCTACTTT saeR' 359063 - 359596 + | truncated response regulator saeR (fragment 1) saeR'' 359597 - 359746 + | truncated response regulator saeR (fragment 2) saeS 359749 - 360783 + | histidine protein kinase SaeS TERM 496 360793 - 360826 + T 100 -21.3 -5.30348 | opp_overlap 360793 CTATAATAATAAAAA CTGACGGTATCCATA ATTT TATGGATACCGTCAG TTTTTATTATTAGCT TERM 497 360826 - 360793 - T 100 -21.3 -5.34365 | opp_overlap 360793 CTATAATAATAAAAA CTGACGGTATCCATA ATTT TATGGATACCGTCAG TTTTTATTATTAGCT scdA 361528 - 360836 - | cell division and morphogenesis-related protein TERM 498 361099 - 361120 + g 74 -3.7 -5.09685 | overlap 361098 CAAAAGCAATCAGTT GAGGGAAAT CCTC ATTATCCTC TTTTTCTGTATGTTC TERM 499 361836 - 361812 - R 100 -10.8 -5.66229 | opp_overlap 361814 361816 ATCAACAATAAAAAA CACACGCTCA TATTT TAAGCGTGTG TAATAGGAGTAGTTA Sca_0355 362685 - 361849 - | Aldo/keto reductase family protein TERM 500 362284 - 362298 + g 70 -6.4 -4.08948 | opp_overlap 362284, overlap 362287 362288 ATTACATACACCAAT GGCTTT TAT AAGGCC TTCTTTATAAAGTTC TERM 501 362877 - 362849 - R 100 -12.5 -5.74086 | opp_overlap 362849 362850, overlap 362850 AAAGGAAATAAAAAA TGTCGGAACTCAA AAG TTGAGCTCCGACG TTTTTCATACAATAT TERM 502 362849 - 362877 + r 100 -12.5 -4.74132 | opp_overlap 362849 362850, overlap 362850 AAAGGAAATAAAAAA TGTCGGAACTCAA AAG TTGAGCTCCGACG TTTTTCATACAATAT TERM 503 362850 - 362876 + r 100 -13.8 -3.43756 | opp_overlap 362849 362850, overlap 362849 AAGGAAATAAAAAAT GTCGGAACTCAA AAG TTGAGCTCCGAC GTTTTTCATACAATA TERM 504 362876 - 362850 - R 100 -16 -4.00791 | opp_overlap 362850 362849, overlap 362849 AAGGAAATAAAAAAT GTCGGAACTCAA AAG TTGAGCTCCGAC GTTTTTCATACAATA Sca_0356 363168 - 362914 - | hypothetical protein Sca_0357 363853 - 363272 - | hypothetical protein TERM 505 363989 - 363963 - R 100 -13.2 -4.51224 | opp_overlap 363963 AATAGTAATAATAAA GGTTGTTCAAAT AAA ATCTGAACAACC TTTTATAATGCTTTG TERM 506 363963 - 363989 + r 100 -11 -4.52703 | opp_overlap 363963 AATAGTAATAATAAA GGTTGTTCAAAT AAA ATCTGAACAACC TTTTATAATGCTTTG Sca_0358 364724 - 364011 - | putative organic radical activating enzyme Sca_0359 365142 - 364717 - | putative 6-pyruvoyltetrahydropterin synthase Sca_0360 365815 - 365144 - | putative ExsB family protein Sca_0361 366157 - 366744 + | glutamine amidotransferase class-I protein Sca_0362 366734 - 367879 + | putative chorismate binding protein Sca_0363 367882 - 368490 + | putative 4-amino-4-deoxychorismate lyase Sca_0364 368771 - 369466 + | putative allophanate hydrolase subunit 1 Sca_0365 369466 - 370470 + | putative allophanate hydrolase subunit 2 TERM 507 370515 - 370546 + F 100 -9.6 -5.77571 | AAGTAGCACTCATCA TGCTGGTTGAATAT ATCT AAATTCAATCAGCA TTTTTATTTTTTAGT TERM 508 371029 - 371001 - f 85 -11.2 -2.67016 | overlap 370997 AACGATGGAAATCTA GTTTAGAAAGTG TGACT CACTTTCCAAAC CCAAGTCTTTTTAGT TERM 509 372661 - 372648 - g 74 -8.1 -3.745 | overlap 372646 TTATGGATGAAAATA CCTGG TAAA CCAGG CGGCGTTGATCACAC Sca_0366 371112 - 373052 + | putative membrane-bound sulfatase TERM 510 373068 - 373098 + F 100 -17 -4.85599 | opp_overlap 373065 373060 373068 373070 TATAGAAGTTAACTA GAGTGCCTAGGACA TTG TGTTCTGGGCACTC TTTTTATACGATAAA TERM 511 373098 - 373068 - f 100 -12.6 -2.81225 | opp_overlap 373068, overlap 373065 373060 373070 TATAGAAGTTAACTA GAGTGCCTAGGACA TTG TGTTCTGGGCACTC TTTTTATACGATAAA TERM 512 373096 - 373070 - f 75 -9.4 -2.94705 | opp_overlap 373068, overlap 373068 373065 373060 TAGAAGTTAACTAGA GTGCCTAGGACA TTG TGTTCTGGGCAC TCTTTTTATACGATA Sca_0367 373321 - 375192 + | putative ABC transporter ATP-binding protein TERM 513 376413 - 376403 - g 74 -4 -5.18643 | TCAATGAAAATAAAA CATA CGA TATG ACAGATGAAGCTAAA TERM 514 376816 - 376796 - g 70 -3.3 -4.91712 | opp_overlap 376798, overlap 376798 TTGAAGTGAGAAAAA CATTGAGTG AAA CACTTAATA TTGCACCGATTAGTA recQ 375205 - 376983 + | DNA helicase recQ TERM 515 376998 - 377048 + F 95 -7.9 -5.44119 | gap 2, opp_overlap 376998 AAAATGTTTTATTAA GAACAGCAAGTATAACAACGAATGG ATA CAATTAG-TGTTA-GCTTGCTGTTC TTTTTTTAAAATAAA opuBA 377083 - 378039 + | putative ATPase component of ABC-type proline/glycine betaine transporter opuAC 378036 - 379550 + | putative substrate binding component of ABC-type glycine betaine transporter TERM 516 379554 - 379595 + F 100 -12.5 -3.49226 | opp_overlap 379559, overlap 379559 TTAATTAAATAAGCT TAAAAGTACTGAGGAAGCT TTAA AGCATTCTCAGTACTTTTC TATTATTATCAAGTT TERM 517 379590 - 379559 - f 95 -10.2 -4.2573 | opp_overlap 379554 379559 TAAATAAGCTTAAAA GTACTGAGGAAGCT TTAA AGCATTCTCAGTAC TTTTCTATTATTATC TERM 518 379559 - 379590 + F 100 -12.4 -4.82162 | opp_overlap 379559, overlap 379554 TAAATAAGCTTAAAA GTACTGAGGAAGCT TTAA AGCATTCTCAGTAC TTTTCTATTATTATC hisC 380128 - 381192 + | putative histidinol-phosphate aminotransferase Sca_0372 381349 - 381648 + | truncated putative 5(3)-deoxyribonucleotidase (fragment 1) Sca_0373 381623 - 381889 + | truncated putative 5(3)-deoxyribonucleotidase (fragment 2) TERM 519 381907 - 381931 + T 76 -5 -5.03994 | ATAATTTTAAGTGAG TGCCGAATTA GTTCA TTGTTCGGCA TTTTTATATGTGAAA TERM 520 382039 - 382010 - T 100 -10.2 -5.00138 | opp_overlap 382010 382013 TACTGAAATTAAAAA GAAGACTATTCA AAGTTG CGAATAGTCTTC TTTGGAAAAATATTA TERM 521 382010 - 382039 + T 81 -9.5 -3.55548 | opp_overlap 382010, overlap 382013 TACTGAAATTAAAAA GAAGACTATTC AAAGTTGC GAATAGTCTTC TTTGGAAAAATATTA Sca_0374 383569 - 382067 - | putative proton-dependent oligopeptide transporter TERM 522 383128 - 383100 - G 70 -2.5 -5.12916 | gap 1, opp_overlap 383107 TAGAAAATAACAAAA CCTG-AATCGAT ACGTGA ATCGTTTTCAGG ATACAGGCGTCCAAC TERM 523 383782 - 383753 - R 100 -10.1 -5.55769 | TTTTACAACAAAAAA CGGTTCAGAACTA TTGC TTGTTCTAAACCG AATATAGATTAAAAG Sca_0375 385318 - 383798 - | putative di-/tripeptide transporter TERM 524 384364 - 384382 + g 74 -8.2 -3.69395 | overlap 384367 TATCTGCAAAGTTTG CAAGGATT GTT GATCCTTG TTCTTGAATCATCCA TERM 525 385473 - 385453 - R 100 -11.1 -5.5604 | opp_overlap 385453 385455 TTAATTAATAAAAAA GAGCGCCCG AAA CGGACACTC TAATTTCTATCAGCG Sca_0376 385986 - 385483 - | putative GTP cyclohydrolase I Sca_0377 386879 - 385989 - | putative permease TERM 526 387169 - 387183 + H 77 -5.8 -4.89477 | opp_overlap 387169 TATTTATTTTAAGCA CTTTTT TTA AAAAAG TTTTGTTCTTGAACG TERM 527 387669 - 387684 + H 81 -2.6 -5.72622 | gap 1, opp_overlap 387671, overlap 387671 AACAACAATAGTAAT CA-GACA GCT TGTCATG TTTTTTATTTATGGC nrdI 387760 - 388152 + | NrdI protein nrdE 388133 - 390229 + | ribonuceloside diphosphate reductase alpha chain nrdF 390368 - 391342 + | ribonucleoside-diphosphate reductase beta chain TERM 528 391406 - 391365 - f 100 -11.7 -4.21098 | opp_overlap 391365 AGATTAATCTGAAAA GCGTTGGATCTGACTGAAA TGAA TTACAGTTAGATTCAACGC TTTTTTATATTTAGA TERM 529 391365 - 391406 + F 100 -16.1 -5.56264 | opp_overlap 391365 AGATTAATCTGAAAA GCGTTGGATCTGACTGAAA TGAA TTACAGTTAGATTCAACGC TTTTTTATATTTAGA sstA 391626 - 392600 + | homolog of FecCD transport family protein SstA sstB 392590 - 393552 + | homolog of FecCD transport family protein SstB sstC 393549 - 394307 + | homolog of ABC transporter ATP-binding protein SstC TERM 530 395040 - 395029 - g 71 -4.4 -4.83032 | ACATGAAAGACAAAA CGAA AAAA TTCG ATAAAACAGTCATGT sstD 394395 - 395423 + | homolog of lipoprotein SstD TERM 531 395470 - 395504 + T 100 -11.6 -4.55295 | opp_overlap 395470 TAAATCTCTGAAAAA TACACCAATTGCCTAT ATT AAAGGGAATTGGTGTA TTTCTTTATGAGAAG TERM 532 395504 - 395470 - T 100 -11.6 -4.60924 | opp_overlap 395470 TAAATCTCTGAAAAA TACACCAATTGCCTAT ATT AAAGGGAATTGGTGTA TTTCTTTATGAGAAG TERM 533 395901 - 395874 - T 79 -7.1 -4.41177 | opp_overlap 395874, overlap 395868 TATACAAATTTAAAA GCTGAAACAAC GATTAA GTCATTTCAGC TTTTATGAGATTTTA Sca_0385 396252 - 395914 - | putative CHY zinc finger family protein murB 397191 - 396265 - | putative UDP-N-acetylenolpyruvoylglucosamine reductase Sca_0387 397795 - 397271 - | hypothetical protein Sca_0388 397900 - 398793 + | putative lipoprotein Sca_0389 398932 - 399252 + | hypothetical protein Sca_0390 399487 - 400617 + | putative glycerate kinase TERM 534 400638 - 400667 + T 100 -9.3 -5.29716 | opp_overlap 400638, overlap 400640 TGAGTACAGTAAAAA GACGGAAACACTT AACT ATGTGTTTCCGCC TTTTTGTTATATTGA TERM 535 400667 - 400638 - T 100 -11.5 -4.82667 | opp_overlap 400638 400640 TGAGTACAGTAAAAA GACGGAAACACTT AACT ATGTGTTTCCGCC TTTTTGTTATATTGA TERM 536 400640 - 400665 + T 78 -10.5 -2.84095 | opp_overlap 400638, overlap 400638 AGTACAGTAAAAAGA CGGAAACACTT AACT ATGTGTTTCCG CCTTTTTGTTATATT pepT 401916 - 400684 - | peptidase T Sca_0392 402427 - 401930 - | hypothetical protein Sca_0393 403210 - 402446 - | hypothetical protein TERM 537 402946 - 402957 + g 81 -4.4 -5.28176 | TACGAGAAATATTAT TTGC GAGT GCAA TTTTTTCTAAATCAG TERM 538 403397 - 403373 - R 100 -12.3 -5.01042 | opp_overlap 403372 403375 403392 AAGTGAAATTAAAAA GACTCAATCCT ATA AGAATTGAGTC CTCTCATAATTTCAA Sca_0394 404482 - 403415 - | hypothetical protein TERM 539 404235 - 404212 - G 74 -4.6 -5.03994 | overlap 404215 CGCCATATACAAAAA CATCGACTAT AAAG ATAATCGCTG CAGATACCATCGTGA TERM 540 404665 - 404640 - H 81 -8.3 -4.08887 | overlap 404643 ATTAGTTAAATGAAA GGAGGTCCCTT TGTC AAAGGACCTGC AACCGTTGATTATAA TERM 541 404662 - 404643 - H 73 -8.6 -3.07332 | overlap 404640 AGTTAAATGAAAGGA GGTCCCTT TGTC AAAGGACC TGCAACCGTTGATTA llm 404763 - 405818 + | putative phospho-N-acetylmuramyl-pentapeptide-transferase TERM 542 405822 - 405855 + T 100 -13.3 -5.67711 | opp_overlap 405822 GAAGAAGAATAAAAA TTGCTGGAATTCTCG CTAA TGAGAACTCCAGCAA TTTTTATTTTGTTTC TERM 543 405855 - 405822 - T 100 -14.8 -5.3798 | opp_overlap 405822 GAAGAAGAATAAAAA TTGCTGGAATTCTC GCTAAT GAGAACTCCAGCAA TTTTTATTTTGTTTC Sca_0396 406500 - 405859 - | hypothetical protein Sca_0397 406641 - 407525 + | hypothetical protein TERM 544 407539 - 407577 + F 100 -10.5 -5.08824 | AACTTTCATTATAGG GCAGATGAAAATACTTG AGCTA CGAGTGTTTTGATCTGC TTTTTTGCATCCAGA Sca_0398 407553 - 408908 + | putative ATP-dependent helicase TERM 545 409047 - 409036 - g 77 -3 -5.46698 | TTTAAAAGTAAAAAA CATA AAAA TATG GATGAAGAAGGTTAT TERM 546 409354 - 409325 - g 81 -8.1 -4.31813 | gap 1, overlap 409322 AAGACATGAAAAGAA CATTCAAT-CCTGT TAC ACAAGTATTGAATG CTAAGAAGGTTTCAT Sca_0399 408901 - 409602 + | putative amidophosphoribosyltransferase Sca_0400 409674 - 410240 + | putative ribosome-associated protein TERM 547 410257 - 410290 + F 81 -4.6 -5.40072 | gap 1, opp_overlap 410258, overlap 410260 ATGTGATATTTGAAA GGG-CTCTTGCTGCA TTTTC TGCTGCAAGAGTTTC TTTTTTTGAGAAAGC TERM 548 410260 - 410286 + F 100 -10.9 -5.20328 | opp_overlap 410258, overlap 410257 TGATATTTGAAAGGG CTCTTGCTGCA TTTTC TGCTGCAAGAG TTTCTTTTTTTGAGA TERM 549 412736 - 412726 - g 75 -5.4 -4.87318 | overlap 412728 GCTAAAATTGAAAAA GCTT ATG AAGC ACAAAAAGCCAATAT secA 410632 - 413160 + | preprotein translocase secA subunit prfB' 413332 - 413403 + | N-terminal part of peptide chain release factor 2 TERM 550 413738 - 413723 - g 73 -9 -3.37236 | overlap 413710 AATGCAATTTTAGAA CTGCAC CCAG GTGCAG GTGGTACCGAGTCTC prfB'' 413447 - 414448 + | peptide chain release factor RF-2, major part TERM 551 414461 - 414486 + F 88 -7.6 -4.9934 | opp_overlap 414454 414461 414463 TAATATAATTCAAAA GTCGAAGTGT GAAATA ACGCTTCGGC TTTTTGTAATCTTAT TERM 552 414870 - 414857 - g 72 -3.8 -4.90778 | CGTAGTTAAAGAAAA CGCT AAATTA AGCG ATGTCGCAGCTTTGT Sca_0404 414759 - 415745 + | putative LysM family protein TERM 553 415787 - 415761 - f 74 -8 -3.77722 | opp_overlap 415761 TTTAATTATTAATAA GCACTGTTCTCA TTT TGAGGATAGTGC TTTTTTGTTCAAAAA TERM 554 415761 - 415787 + F 100 -12.4 -5.4505 | opp_overlap 415761 TTTAATTATTAATAA GCACTGTTCTCA TTT TGAGGATAGTGC TTTTTTGTTCAAAAA Sca_0405 415939 - 416580 + | predicted metal-dependent phosphohydrolase of HD superfamily Sca_0406 416587 - 416832 + | hypothetical protein TERM 555 416861 - 416885 + F 78 -4.3 -5.36314 | overlap 416864 GAATATGAAATGAGG GTGCTTGTC ATATGTC GACAAGTGC TTTTTTCGTCTTTTA TERM 556 418864 - 418850 - g 71 -5 -4.55287 | TGTACGCAGATAAAA TCACAG ATT CTATGA AATTTGCGATTGATG uvrB 417181 - 419163 + | excinuclease ABC subunit B TERM 557 419267 - 419289 + G 76 -9.2 -3.37612 | opp_overlap 419267 TTAATTGTGATGACA GGCTTATCAG GTT CTGGTAAGTC TTCCTTAGCGTTCGA uvrA 419171 - 422014 + | excinuclease ABC subunit A TERM 558 422058 - 422020 - f 70 -8.6 -2.66866 | gap 1, opp_overlap 422028 422030, overlap 422028 AACAAAATAAGAGAC TAGAAAAAGACATTTTG TGAATG CAAAATGTCTTTTT-TA CATACATAGAATGTT TERM 559 422051 - 422028 - f 90 -8.3 -4.97666 | opp_overlap 422028 422030, overlap 422020 AAGAGACTAGAAAAA GACATTTTG TGAATG CAAAATGTC TTTTTTACATACATA TERM 560 422028 - 422051 + F 100 -9 -5.09895 | opp_overlap 422020 422028, overlap 422030 AAGAGACTAGAAAAA GACATTTTGT GAAT GCAAAATGTC TTTTTTACATACATA hprK 422226 - 423167 + | HPr kinase/phosphatase lgt 423164 - 423991 + | prolipoprotein diacylglyceryl transferase TERM 561 424120 - 424166 + G 91 -11.7 -3.92542 | gap 1 ATATTAATTGAGATT GCACGGTTTATTCCATCGTTAC CTTT GAAACGATGG-ATTTACCGTGC TTGTTTAGGAATGGA Sca_0411 424006 - 424488 + | putative acetyltransferase TERM 562 425309 - 425333 + G 71 -4.3 -4.78326 | opp_overlap 425330, overlap 425310 425330 ATCTCAGAAATTACT CTTCCCTTTAT ATA AAAAAGGGAAA TTTATTTCTTTACAG Sca_0412 424509 - 425948 + | conserved hypothetical protein with TPR repeats trxB 426058 - 427011 + | putative thioredoxine reductase TERM 563 427714 - 427692 - g 73 -6.4 -4.1891 | TTTGTTTAATAGAAA TGATATTGAA ACT TTCAGTATCA GTGTCACAAGTTTTG Sca_0414 427150 - 428103 + | putative P-loop-containing kinase Sca_0415 428090 - 429088 + | hypothetical protein Sca_0416 429107 - 430051 + | hypothetical protein TERM 564 430081 - 430055 - T 100 -11.7 -4.71061 | opp_overlap 430055 ATCGATATGTAAAAA GGTTATTCCCA TTTTT CGGGAATAACC TTTTTTTATAATGCT TERM 565 430055 - 430081 + T 100 -11 -5.67967 | opp_overlap 430055 ATCGATATGTAAAAA GGTTATTCCC ATTTTTC GGGAATAACC TTTTTTTATAATGCT Sca_0417 431276 - 430101 - | putative permease of the major facilitator superfamily TERM 566 431595 - 431642 + r 100 -15.9 -4.15703 | opp_overlap 431598, overlap 431598 431601 AGCTGTATGTAAATA AAAGAAGAACCGAAGGAAATT GACTAG AATTTCCTTCGGTTCTTCTGC TTGTTATTTATCAAA TERM 567 431598 - 431639 + r 100 -22 -3.08962 | opp_overlap 431598, overlap 431595 431601 TGTATGTAAATAAAA GAAGAACCGAAGGAAATT GACTAG AATTTCCTTCGGTTCTTC TGCTTGTTATTTATC TERM 568 431639 - 431598 - R 100 -22 -4.90778 | opp_overlap 431598 431595 431601 TGTATGTAAATAAAA GAAGAACCGAAGGAAATT GACTAG AATTTCCTTCGGTTCTTC TGCTTGTTATTTATC TERM 569 431601 - 431636 + r 100 -17.9 -3.65786 | opp_overlap 431598, overlap 431598 431595 ATGTAAATAAAAGAA GAACCGAAGGAAATT GACTAG AATTTCCTTCGGTTC TTCTGCTTGTTATTT Sca_0418 432993 - 431668 - | putative branched-chain amino acid transport system II carrier protein TERM 570 432775 - 432763 - G 84 -7.7 -4.70515 | CACAGCGAAAATAAA TCCGA ATT TCGGA TGAACCCTATTACCT TERM 571 433252 - 433227 - H 80 -7 -4.81814 | overlap 433251 ATGAGCATAATAAAA GCTTATAACC ATCAAA AGTTATAAGC TTAAAAAGCCCCCTC clpP 433481 - 434065 + | putative ATP-dependent Clp protease proteolytic subunit TERM 572 434081 - 434112 + T 100 -13.2 -5.2853 | opp_overlap 434085, overlap 434085 AATGAATAAACGATA AAAAGTTCCGGAAA TTAA TTTCCGGAACTTTG TTTTATTTTTGGCTG TERM 573 434085 - 434108 + T 100 -14 -5.098 | opp_overlap 434085, overlap 434081 AATAAACGATAAAAA GTTCCGGAAA TTAA TTTCCGGAAC TTTGTTTTATTTTTG TERM 574 434108 - 434085 - T 100 -14 -5.0809 | opp_overlap 434085 434081 AATAAACGATAAAAA GTTCCGGAAA TTAA TTTCCGGAAC TTTGTTTTATTTTTG Sca_0420 435291 - 434389 - | putative nucleoside-diphosphate sugar epimerase TERM 575 434461 - 434475 + g 100 -8.6 -5.07275 | opp_overlap 434448 434447 ACCGCGTGCTTGCAA GCGATT CGG AATCGC TTTTTGTGTATCTAA TERM 576 435540 - 435574 + H 100 -10.1 -5.45652 | overlap 435543 TTTGACTCCCTTTAG TATTGGGCCTATGCG AGAAG CGTATAGGTCCATTA TTTTTTATTAGAGAT TERM 577 435543 - 435571 + H 100 -11.8 -4.81306 | overlap 435540 GACTCCCTTTAGTAT TGGGCCTATGCG AGAAG CGTATAGGTCCA TTATTTTTTATTAGA TERM 578 435806 - 435796 - H 72 -4 -5.13521 | AAACTATGTAAAAAA CAAT TCA ATTG GGTAAATAAAATTAA Sca_0421 435881 - 436771 + | hypothetical protein TERM 579 436789 - 436825 + T 100 -10.3 -5.38249 | opp_overlap 436789 TATTAAACACAAAAA TGGAGCATTCTCTTA AATTGAA TAAGAGCGTGCTCCA TTTTTTCTAATTCAT TERM 580 436825 - 436789 - T 93 -8.1 -5.22289 | opp_overlap 436789 TATTAAACACAAAAA TGGAGCATTCTCTTA AATTGAA TAAGAGCGTGCTCCA TTTTTTCTAATTCAT Sca_0422 437077 - 436847 - | hypothetical protein TERM 581 437814 - 437803 - g 74 -3 -5.25803 | AACTCTTAGAAAAAA CTTT TTAT AAAG ATGCAATAGTATCTA Sca_0423 437391 - 438407 + | putative transcriptional regulator with sugar binding domain gapA 438473 - 439480 + | glyceraldehyde-3-phosphate dehydrogenase TERM 582 439549 - 439580 + F 100 -15.3 -4.33151 | opp_overlap 439537 439552 TGATCAGCTTTTGAG TAAGCGGAGAGGC ACATAC GCTTCTCCGCTTA TTTTAAATTATCATA TERM 583 439577 - 439552 - f 85 -11.1 -3.14564 | opp_overlap 439549, overlap 439537 TCAGCTTTTGAGTAA GCGGAGAGGCA CATA CGCTTCTCCGC TTATTTTAAATTATC pgk 439744 - 440934 + | phosphoglycerate kinase tpiA 440977 - 441738 + | triosephosphate isomerase TERM 584 442045 - 442062 + G 70 -8.5 -3.37732 | opp_overlap 442042 442045 GAATGAAGCAATTGA TCATGTG AAAT CACATGA TTCTGCACTTCATGT gpmI 441740 - 443257 + | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase eno 443353 - 444657 + | 2-phospho-D-glycerate hydrolase (enolase) TERM 585 444715 - 444750 + F 100 -12.8 -5.24531 | opp_overlap 444715 444718 GTATAACCTTTTAAA GAAGCTGTTAAAGTTC ATAA GGACTTTAGCAGTTTC TTTTTTATGCCGAGT TERM 586 444928 - 444944 + G 76 -2.3 -5.5454 | overlap 444930 AGTGATATTAGCAGT GATATAT GCC ATATACC TTTTTGTTTCTTTAG TERM 587 445031 - 445015 - g 81 -3.7 -5.5074 | opp_overlap 445015 TAATGCAACAAAAAA TGCAGTT GGA AACTTCA TTAATAGCTACCGTT Sca_0429 444845 - 445315 + | hypothetical protein secG 445406 - 445642 + | putative preprotein translocase subunit SecG TERM 588 445644 - 445666 + F 88 -4.1 -5.73978 | ATTTCAATATGTAAG GTCCGAC AATGTAAAA GTCGGGC TTTTTTCTTTATAAT TERM 589 446428 - 446417 - g 74 -3 -5.38958 | opp_overlap 446425 ATTGATAAAGAAAAA GAAA AAGT TTTC GAGGATATTTACGAG est 445733 - 446473 + | carboxylesterase precursor TERM 590 447088 - 447061 - g 76 -10 -3.08947 | overlap 447058 GAAGGACATAAAGTA CTTGTGCAAATT TCAA AATATGCACAAG GCAATGACAATCCAG TERM 591 447359 - 447346 - g 82 -6.7 -5.03715 | ATCAGTCTTAAAAAA TTGCC GAAT GGCAA CACACAATTAACAGT rnr 446512 - 448869 + | putative ribonuclease R TERM 592 448987 - 448966 - g 83 -2.3 -5.80727 | gap 1, overlap 448956 AAAAAGAAGAAAAAA TCTCCAGGTA CCT TAGC-GGAGA ATCGTAAAGCAAGAC smpB 448945 - 449415 + | putative tmRNA-binding protein SmpB TERM 593 449533 - 449556 + F 89 -10.4 -3.82084 | opp_overlap 449532 449529 GATTAAGAAAGCTAT CGGATTCAAC ATAT GTTGAATCTG TTATTAATATTACGG TERM 594 449972 - 449995 + F 90 -7.5 -5.60556 | ATATCAGATTTGAGA GAAACGTTG TTAAAT CAGCGTTTC TTTTTATTTTGTCTT TERM 595 450112 - 450130 + F 71 -2.4 -5.35815 | overlap 450129 ATCCTTCAAAAAGAA CGTTAAGT GTA ATTTACCG TTTTTATTTGGTATA Sca_0434 450785 - 451387 + | putative flavoprotein oxygenase, DIM6/NTAB family protein Sca_0435 451535 - 452599 + | BNR repeat domain protein TERM 596 452650 - 452620 - T 80 -6.9 -4.7339 | opp_overlap 452614 452620 AATAAATGTTAAAAA GACAGATTGCTTT TATAT AGAGCATTCTGTC TTCGTTATTTTTATG TERM 597 452620 - 452650 + T 84 -9.1 -3.77278 | opp_overlap 452620, overlap 452614 AATAAATGTTAAAAA GACAGATTGCTTT TATAT AGAGCATTCTGTC TTCGTTATTTTTATG Sca_0436 453425 - 452697 - | similar to exotoxin csp 453810 - 454013 + | putative cold-shock protein TERM 598 454079 - 454036 - f 100 -17 -4.26903 | opp_overlap 454039, overlap 454039 TTTAGCTGATTAAAA TAAGCAGTGGAACAATCTAT ATTG ATAGGTTGTTCCACTGCTTT TTTGTATAATTAGGG TERM 599 454076 - 454039 - f 100 -18.7 -4.25658 | opp_overlap 454039, overlap 454036 AGCTGATTAAAATAA GCAGTGGAACAATCTAT ATTG ATAGGTTGTTCCACTGC TTTTTTGTATAATTA TERM 600 454039 - 454076 + F 100 -20.9 -5.42131 | opp_overlap 454039 454036 AGCTGATTAAAATAA GCAGTGGAACAATCTAT ATTG ATAGGTTGTTCCACTGC TTTTTTGTATAATTA Sca_0438 454120 - 454605 + | hypothetical protein TERM 601 454600 - 454652 + T 86 -7.2 -5.28755 | opp_overlap 454600 454608 454611, overlap 454608 AATTTAAATAATAAA GCATGAAACAAGCCATTTCGTT CAATGAAAT AACGAAATGGCTTGTTTTTAAC TTTTTTCATGTATTT TERM 602 454652 - 454600 - T 81 -7.2 -4.59489 | opp_overlap 454600 454608, overlap 454608 454611 AATTTAAATAATAAA GCATGAAACAAGCCATTTCGTT CAATGAAAT AACGAAATGGCTTGTTTTTAAC TTTTTTCATGTATTT TERM 603 454608 - 454644 + T 100 -14 -4.95854 | opp_overlap 454600 454608 454611, overlap 454600 TAATAAAGCATGAAA CAAGCCATTTCGTT CAATGAAAT AACGAAATGGCTTG TTTTTAACTTTTTTC TERM 604 454644 - 454608 - T 100 -14 -3.92804 | opp_overlap 454608 454600, overlap 454600 454611 TAATAAAGCATGAAA CAAGCCATTTCGTT CAATGAAAT AACGAAATGGCTTG TTTTTAACTTTTTTC TERM 605 454641 - 454611 - T 91 -9.9 -4.06533 | opp_overlap 454608 454600, overlap 454608 454600 TAAAGCATGAAACAA GCCATTTCGTT CAATGAAAT AACGAAATGGC TTGTTTTTAACTTTT Sca_0439 455067 - 454648 - | hypothetical protein TERM 606 455226 - 455199 - R 100 -12.2 -5.34309 | ACCATCAAAGAAAAA TCGGGATTTATT CTTA AACAAATCCCGA TAGGTAGTAGCATAT Sca_0440 455966 - 455256 - | hypothetical protein TERM 607 456065 - 456038 - R 100 -10 -5.82172 | opp_overlap 456038 456041 AGTAACATAAAAAAA CAAGGTTGAATT TTGA AGTTCAACCTTG TTGATGAAAATTAAA TERM 608 456038 - 456065 + r 100 -12.2 -3.16742 | opp_overlap 456038, overlap 456041 AGTAACATAAAAAAA CAAGGTTGAATT TTGA AGTTCAACCTTG TTGATGAAAATTAAA TERM 609 456041 - 456062 + r 77 -8.1 -3.72592 | opp_overlap 456038, overlap 456038 AACATAAAAAAACAA GGTTGAATT TTGA AGTTCAACC TTGTTGATGAAAATT Sca_0441 457380 - 456076 - | putative cation transport protein of TrkH family Sca_0442 457433 - 458176 + | putative lemA family protein TERM 610 458995 - 459021 + G 83 -8.6 -4.19276 | overlap 458996 GGCGGTGGCGGCGGC TTCTCTGGCGGC GGT GCCGGCAGAGGC TTTTAAAAGTTTTAA TERM 611 458996 - 459020 + G 85 -12.1 -3.10843 | overlap 458995 GCGGTGGCGGCGGCT TCTCTGGCGGC GGT GCCGGCAGAGG CTTTTAAAAGTTTTA Sca_0443 458224 - 459027 + | hypothetical protein TERM 612 459041 - 459066 + F 100 -11.9 -5.27779 | opp_overlap 459041 AAAAGTTTTAAATAA GGGAGTTCGCA GGAA TGCGAGCTCTC TTTTTTGGTGTTAAA TERM 613 459066 - 459041 - f 74 -7.5 -3.95674 | opp_overlap 459041 AAAAGTTTTAAATAA GGGAGTTCGCA GGAA TGCGAGCTCTC TTTTTTGGTGTTAAA Sca_0444 459247 - 459528 + | hypothetical protein TERM 614 459639 - 459621 - f 74 -6.8 -4.19678 | overlap 459638 TTATACTTGAACAAA TCCTATCA AAC TGATAAGA AATGTTTTTCGGAGT Sca_0445 459714 - 459917 + | hypothetical protein TERM 615 459925 - 459956 + T 70 -3.9 -5.09225 | gap 2 ATAATTAAAAATAAA CAAGTGCAAATTGGT TAAT ACCG-T-TGCACTTG TTTTTTAAATAAAAT TERM 616 459995 - 459971 - T 85 -7.3 -4.86731 | opp_overlap 459970 459976 GTTTTTTAAATAAAA TTAAATCGAAA AAT TTACGATTTAA GGTTTACAAATAAAG TERM 617 460043 - 460031 - T 76 -6.3 -4.67608 | opp_overlap 460030 460031 TACTGTAATATAAAA CGTAA CCG TTACG ATTTGCGGTCACTTA TERM 618 460084 - 460107 + T 100 -9.7 -5.64274 | opp_overlap 460084 ACTTTACTTAGTCAA TTCGGTACA CGGGAA TGTACCGAA TTTTTTTATGCCTAA TERM 619 460107 - 460084 - T 81 -10.4 -3.07935 | opp_overlap 460084 ACTTTACTTAGTCAA TTCGGTACAC GGGA ATGTACCGAA TTTTTTTATGCCTAA TERM 620 460149 - 460127 - T 100 -10.6 -5.03314 | opp_overlap 460127 TTTATGCCTAAAAAA CCTATCGGCA GAG CGCCAATAGG TAGATTAATTTTTAG Sca_0446 460549 - 460154 - | hypothetical protein Sca_0447 461090 - 460572 - | putative acetyltransferase, similar to lactococcal prophage ps3 protein 05 TERM 621 460714 - 460700 - G 70 -2.8 -5.24531 | opp_overlap 460701, overlap 460701 ATTCGCTATAAAAAA CCATTG CGC CAATGT TATTTGAAGCTACCG aroD 461522 - 462247 + | putative 3-dehydroquinate dehydratase Sca_0449 462320 - 462862 + | putative nitroreductase TERM 622 462871 - 462902 + T 100 -14.6 -5.27206 | opp_overlap 462871 ATATTAATTTTAAAA CGGGCTGTGATT CACATAGA AATCACAGCCCG TTTTTGTTGTCTGTA TERM 623 462902 - 462871 - T 100 -15.3 -4.21098 | opp_overlap 462871 ATATTAATTTTAAAA CGGGCTGTGATTC ACATAG AAATCACAGCCCG TTTTTGTTGTCTGTA Sca_0450 463242 - 462919 - | putative thioredoxin Sca_0451 463387 - 463743 + | putative ArsC family protein gcdH 463900 - 464280 + | glycine cleavage system protein H TERM 624 464295 - 464325 + F 90 -6.2 -5.54264 | overlap 464298 ATTTATATTGATATG CAACTCCAGGATAC TTT GTATTTTGGGGTTA TTTTTTTCGCTATTT TERM 625 464298 - 464322 + F 85 -7.9 -4.8236 | overlap 464295 TATATTGATATGCAA CTCCAGGATAC TTT GTATTTTGGGG TTATTTTTTTCGCTA Sca_0453 464560 - 464922 + | TOPRIM domain containing protein Sca_0454 464919 - 465218 + | hypothetical protein TERM 626 465404 - 465378 - f 76 -9.6 -2.73875 | opp_overlap 465378 465396, overlap 465375 465380 465388 465389 465395 465396 TGCTTTTGAAGATGA GAGAAAGAAATT TTA AATTGCTTTCTC TTTATTGCTATAAGC TERM 627 465378 - 465404 + F 91 -9.6 -4.29106 | opp_overlap 465378 465375 465380 465388 465389 465395 465396, overlap 465396 TGCTTTTGAAGATGA GAGAAAGAAATT TTA AATTGCTTTCTC TTTATTGCTATAAGC TERM 628 465396 - 465436 + F 100 -11.5 -5.01811 | gap 1, opp_overlap 465380 465378 465375 465396 465395 465389 465388, overlap 465378 AAAGAAATTTTAAAT TGCTTTCTCTTTATTGCT ATAAGC AGCGATAA-GAGAAAGCA TTTTTAATTTGGTAG TERM 629 465436 - 465396 - f 76 -10 -2.858 | gap 1, opp_overlap 465378 465396, overlap 465380 465378 465375 465395 465389 465388 AAAGAAATTTTAAAT TGCTTTCTCTTTATTGCTA TAAG CAGCGATAA-GAGAAAGCA TTTTTAATTTGGTAG TERM 630 465750 - 465714 - g 70 -5.3 -4.37199 | AGCACAATTAAGAAA GAAACGTCAAAAAGTCA GCA TGATTTTCCAACATTTC AATTTATTATGGTCA Sca_0455 465478 - 466503 + | ABC transporter ATP-binding protein Sca_0456 466496 - 467191 + | putative ABC transporter permease protein Sca_0457 467225 - 468049 + | putative lipoprotein TERM 631 468066 - 468092 + F 100 -13.8 -5.79595 | ATAATGATTTTCTTA CTCCTCTGACCT GTT AGGTTGGAGGAG TTTTTTCTTTTGCAA Sca_0458 468422 - 469180 + | putative ABC transporter ATP-binding protein Sca_0459 469246 - 470553 + | hypothetical protein csdB 470756 - 471988 + | putative selenocysteine lyase Sca_0461 471978 - 472448 + | NifU-like protein sufB 472679 - 474076 + | putative FeS assembly protein SufB int 475193 - 474144 - | phage integrase TERM 632 474529 - 474560 + g 100 -12.5 -5.61913 | overlap 474527 TATATTGTTCTGTTG GAGATGTCCATAG TTTTGT CTATGGATATCTC TTTTTTATATTTATT TERM 633 475070 - 475060 - G 82 -6.8 -5.02476 | opp_overlap 475059 ATATCGTTTAAAAAA GCAG CTT CTGC ATACTTAGCTTCTCT TERM 634 475251 - 475234 - R 76 -7 -4.40692 | overlap 475231 GGTAAAAAATAATAA GGGTAC GGTGGT GTACCC TAGAGCTATTGATTT TERM 635 475493 - 475532 + r 81 -8.2 -4.2237 | gap 2, opp_overlap 475490, overlap 475488 ATTTACAAAAGTTGA TACCAGCTTCT-T-TAGC TCCCAC GCTATATAGAAGCTGGTA TTTTCAAATTGATTT TERM 636 475622 - 475652 + r 100 -10.6 -5.10767 | opp_overlap 475622 AAGTAAACTGCAAAA CCTCGGCTATTAAT ATC ATTAGTAGTTGAGG TTTTTGTATTACATA Sca_0464 475852 - 475670 - | hypothetical protein TERM 637 475870 - 475887 + r 83 -7.7 -4.5448 | overlap 475877 CATTTCACCTTTCAG CGTCTAC TAAC GTAGGCG TTATTTTTATACCTA TERM 638 475877 - 475890 + r 74 -5.3 -4.91459 | overlap 475870 CCTTTCAGCGTCTAC TAACG TAGG CGTTA TTTTTATACCTATTC TERM 639 475950 - 475931 - R 73 -3.5 -5.26316 | overlap 475933 GGAGGGGATAAAAAA TAGGGCA AGTGAA TGCCCTG TCAAGTTAAACGCTT TERM 640 475948 - 475933 - R 72 -6.1 -4.26475 | overlap 475931 AGGGGATAAAAAATA GGGCA AGTGAA TGCCC TGTCAAGTTAAACGC Sca_0465 476658 - 476194 - | hypothetical protein Sca_0466 476997 - 476674 - | putative repressor, phage associated TERM 641 477091 - 477076 - H 95 -7.6 -5.34632 | AAGAAAACAGAAAAA CCGAAA AAAA TTTCGG ATAAAATGAATTATT TERM 642 477624 - 477596 - g 100 -11.1 -4.83722 | opp_overlap 477603 AAGATGATAAGAAAA TTCTAACGTCGCG AAA CACGACTTTAGAA AATTTGCCAAATCGA Sca_0467 477436 - 478203 + | putative antirepressor, phage associated TERM 643 478336 - 478298 - g 93 -6.8 -5.90231 | opp_overlap 478299, overlap 478299 AGAAATACAAAAAAA CCCAAACCCACAGTTG ATTGAGG CAACTGCGAATTTGGT CTTAGCTTACAAAGA TERM 644 478335 - 478299 - g 89 -10.3 -4.10478 | opp_overlap 478299, overlap 478298 GAAATACAAAAAAAC CCAAACCCACAGTTG ATTGAGG CAACTGCGAATTTGG TCTTAGCTTACAAAG Sca_0468 478209 - 478364 + | hypothetical protein Sca_0469 478581 - 478357 - | hypothetical protein TERM 645 478586 - 478601 + r 71 -7.6 -3.48276 | opp_overlap 478584 478586 TCAATGTTCATAATA TCACCT CCTT AGGTGA TTATATCAAAACCCA TERM 646 478703 - 478676 - R 100 -7.8 -5.83211 | opp_overlap 478676 GAGCAAAATAAAAAA TCTCGATGTAGC GATG ACCACATCAAGA TTACTGGATGGGAGA TERM 647 479137 - 479126 - R 70 -4.4 -4.96388 | AAGGAGGAAATAAAA TGAG CAAA CTCA AAGCAATCAAAATAG TERM 648 479194 - 479150 - R 73 -5.9 -4.5287 | gap 1, overlap 479152 TCAAAGCAATCAAAA TAGCACTCCTAATCGTCATC TTGGCG GAAGA-GATTAAGAGTGCTG TGAAAAAAATTCATT TERM 649 479192 - 479152 - R 77 -8.5 -3.85947 | gap 1, overlap 479150 AAAGCAATCAAAATA GCACTCCTAATCGTCATC TTGGCG GAAGA-GATTAAGAGTGC TGTGAAAAAAATTCA Sca_0470 479524 - 479252 - | hypothetical protein Sca_0471 479588 - 479824 + | hypothetical protein TERM 650 480077 - 480048 - f 100 -12.3 -5.58074 | TAAGTATTAAAAAAA GACTGCTAGCAAC GGCA ATTGCTAACAGTC AAAGATGAAATTAGA Sca_0472 480130 - 480375 + | hypothetical protein Sca_0473 480368 - 480628 + | hypothetical protein Sca_0474 480585 - 481256 + | hypothetical protein ssb 481256 - 481687 + | putative single strand DNA binding protein,phage associated Sca_0476 481699 - 482250 + | putative HNH-family endonuclease, phage associated Sca_0477 482251 - 482925 + | hypothetical protein Sca_0478 482922 - 483683 + | hypothetical protein Sca_0479 483684 - 484469 + | putative IstB-like ATP-binding protein, phage associated Sca_0480 484635 - 485042 + | putative holliday junction resolvase, phage associated Sca_0481 485039 - 485215 + | hypothetical protein Sca_0482 485221 - 485751 + | hypothetical protein Sca_0483 485752 - 486228 + | hypothetical protein Sca_0484 486221 - 486706 + | hypothetical protein Sca_0485 486753 - 486950 + | hypothetical protein dut 487147 - 487656 + | putative dUTP pyrophosphatase, phage associated Sca_0487 487706 - 487912 + | hypothetical protein Sca_0488 487913 - 488155 + | hypothetical protein Sca_0489 488427 - 488711 + | hypothetical protein Sca_0490 489235 - 489414 + | hypothetical protein Sca_0491 489427 - 489840 + | hypothetical protein TERM 651 490034 - 490061 + F 93 -8.5 -5.12172 | TACTATATTATAACT GAGGCACATCA CTAACA TGGTGTGTCTC TTTTGTTTATTGATA Sca_0492 490644 - 490991 + | hypothetical protein TERM 652 491213 - 491251 + G 77 -2.5 -5.5074 | gap 1, opp_overlap 491225, overlap 491225 GTACCATTTATATTT CTGTTCGAAAAAGAAGGG AACT TCC-TATATTTCGAGCAG TTTTTTATTACGTTA Sca_0493 490988 - 492628 + | putative phage terminase, large subunit TERM 653 492749 - 492733 - g 76 -5.9 -4.65838 | GATACATCTGAAAAA GCTTATT TGA AACAAGC AGCATTGAATACTTG Sca_0494 492643 - 493815 + | putative phage portal protein Sca_0495 493805 - 494521 + | putative Clp protease, phage associated Sca_0496 494546 - 495664 + | hypothetical protein Sca_0497 495737 - 496033 + | hypothetical protein Sca_0498 496008 - 496373 + | hypothetical protein Sca_0499 496370 - 496777 + | hypothetical protein Sca_0500 496774 - 497169 + | hypothetical protein TERM 654 497156 - 497176 + F 93 -8.4 -5.28176 | AATATTACAAAGGCT TACACATC GAATA GATGTGTA TTTTTTATGCCTAAA Sca_0501 497211 - 497852 + | major tail protein TERM 655 497982 - 498007 + G 86 -9.7 -4.14725 | opp_overlap 497980 497982 TGTAGGCACACAAGA CGGAGAGGGTC GTTT GACTGTCTCCG TTTCTGGTTTGAATG Sca_0502 497929 - 498390 + | similar to minor tail protein of phage phiSLT TERM 656 498379 - 498401 + F 100 -10.6 -6.11392 | ATCACAGTTACTACG GACGCAGTTT AAT ACACTGCGTC TTTTTTTATTTATTT Sca_0503 498438 - 498782 + | hypothetical protein Sca_0504 498833 - 498988 + | hypothetical protein TERM 657 499364 - 499331 - g 78 -5.3 -4.98255 | opp_overlap 499335 TGCTAACCAGAAAAA CAAACAAGCGTTAGA AAAA TCTAATGCAAGTTTG AAAGAAAGCAATCGA Sca_0505 499002 - 501107 + | truncated phiSLT orf2067-like protein (fragment 1) TERM 658 501925 - 501913 - g 78 -4.1 -5.4251 | GCTATATACAAAAAA GCTCA TGA TGAAC ATAGAGCATTGAAAA TERM 659 502157 - 502146 - g 70 -3 -5.08601 | TGATGCCAAGAAAAA GTAT AAAG ATAC TGTGGCCGAAGCAAT TERM 660 503004 - 502994 - g 95 -5.4 -6.10489 | opp_overlap 502994 AAGTTGAAAAAAAAA CACA TAG TGTG TTTAACTCTGGTAAA TERM 661 503227 - 503208 - g 85 -7.2 -4.98616 | CCAAAACATGAAAAA TAAAGCGA CTGA CCGCTTTA AAGAAATTGCTGCAC Sca_0506 501142 - 505263 + | truncated phiSLT orf2067-like protein (fragment 2) TERM 662 505416 - 505435 + G 91 -9.3 -4.65819 | opp_overlap 505413 505411 505416 GATGGAGAGATACCA GGTGCGA TTAGTT TCGCACC TTTTAATTTAGTTTT TERM 663 505435 - 505416 - g 72 -9.3 -2.73275 | opp_overlap 505416, overlap 505413 505411 GATGGAGAGATACCA GGTGCGA TTAGTT TCGCACC TTTTAATTTAGTTTT Sca_0507 505260 - 506093 + | hypothetical protein TERM 664 506867 - 506891 + G 100 -9.2 -4.82154 | opp_overlap 506881 TAAAAGATGGCACAT GGCGCACCGA AGAAG TCGGCGCGTC TTTTTCATATGAATT Sca_0508 506104 - 507669 + | hypothetical protein Sca_0509 507662 - 507880 + | hypothetical protein Sca_0510 507885 - 509840 + | hypothetical protein TERM 665 511098 - 511113 + G 76 -4.8 -5.00616 | CGTCAAATGTGCTAC CTAAAT ATGC ATTTAG TTTTTTAGCAAGAAC Sca_0511 509843 - 511267 + | hypothetical protein Sca_0512 511272 - 511628 + | hypothetical protein Sca_0513 511628 - 511801 + | hypothetical protein TERM 666 511791 - 511810 + F 82 -4.3 -5.54907 | opp_overlap 511791 ATGGAATACCAGAAG GTCACTA TTAATT TAGTGGC TTTTTATTTTATAGA Sca_0514 511840 - 512262 + | putative membrane protein, phage associated Sca_0515 512249 - 512647 + | hypothetical protein TERM 667 512648 - 512667 + F 85 -7.8 -4.8048 | opp_overlap 512648 ATCTTCTTTAAATAA GTCGGCAC ATAT GTGTCGGC TTTTTAATATACAAG TERM 668 512732 - 512715 - g 72 -4.1 -4.89966 | ATATTTAAAAATAAA GATGTAC AAGC GAACATC AATAATAAAAGTGTA TERM 669 513503 - 513491 - g 74 -4.9 -4.72846 | overlap 513483 TTATATATCTAAAAA TTTAG AAA CTAAA CACATGACATCATAC TERM 670 514293 - 514311 + G 70 -3.1 -5.00884 | ATTGCAGGATTGGTA TACCAAC CACAA GCTGGTA TTTTTTACGAAGGCT Sca_0516 512694 - 514799 + | hypothetical protein TERM 671 514802 - 514833 + F 84 -8.8 -4.25104 | opp_overlap 514808, overlap 514808 TTGGAATGTATAGAT TATAAAGTCGGCAC ATAT GTGTCGGCTTTTTA TTTTACTCGAAAGGA TERM 672 514808 - 514827 + F 95 -7.8 -5.50723 | opp_overlap 514808, overlap 514802 TGTATAGATTATAAA GTCGGCAC ATAT GTGTCGGC TTTTTATTTTACTCG Sca_0517 514858 - 515121 + | putative holin TERM 673 515226 - 515241 + G 71 -4.7 -4.69214 | CAGTGTTTTGATCTA GCCAA CCAATA TTGGC TTTATTTATTCAATC Sca_0518 515121 - 516524 + | putative amidase, phage associated TERM 674 516578 - 516603 + F 100 -10.5 -5.82281 | TGTGCATCCATATTT GAGGATTGCTT GGCA GAGCAGTCCTC TTTTTTTATGTATTT TERM 675 516803 - 516832 + F 72 -4.3 -5.16237 | opp_overlap 516803 TTTATACATAATTTA CTCACCTATAC TATATACT GAATAGGTGGG TTTTTTGATACCATT TERM 676 517058 - 517046 - f 72 -4.9 -4.88222 | ATGAAAATCCAAAAA CAAAT ATA ATTTG TATAACAGAGTACAA Sca_0519 517218 - 517898 + | hypothetical protein Sca_0520 517891 - 518031 + | hypothetical protein glpQ 518111 - 518911 + | putative glycerophosphoryl diester phosphodiesterase TERM 677 518946 - 518909 - f 73 -9.3 -2.71503 | opp_overlap 518914, overlap 518914 TTTAATAACAATCCA TAAAACAGCCCACCT AAATGAAA AGATGGGCTGTTTTG TAAGTGACATTTGAT TERM 678 518941 - 518914 - f 100 -9.2 -4.50943 | opp_overlap 518914, overlap 518909 TAACAATCCATAAAA CAGCCCACCT AAATGAAA AGATGGGCTG TTTTGTAAGTGACAT TERM 679 518914 - 518941 + F 76 -7 -4.42653 | opp_overlap 518909 518914 TAACAATCCATAAAA CAGCCCACCT AAATGAAA AGATGGGCTG TTTTGTAAGTGACAT TERM 680 519120 - 519145 + F 100 -10.5 -5.68039 | overlap 519109 AATGTCCATCCATTG GAGGATTGCTT GGCT GAGCAGTCCTC TTTTTTTATGAGTTT TERM 681 519350 - 519379 + F 85 -7.9 -4.75404 | TTATACATAATTCTA CCCACCTATAC TATATACT GAATAGGTGGG TTTTTGATACCATTT TERM 682 519599 - 519569 - f 81 -9.8 -3.51598 | opp_overlap 519569 AATAAATGATTATAA GCAGTGTGTAAATT TAG AATTTACGCGCTGC TTTTTTTGTTTATAT TERM 683 519569 - 519599 + F 100 -14.2 -6.04953 | opp_overlap 519569 AATAAATGATTATAA GCAGTGTGTAAATT TAG AATTTACGCGCTGC TTTTTTTGTTTATAT Sca_0522 519699 - 519914 + | hypothetical protein Sca_0523 520221 - 521174 + | hypothetical protein Sca_0524 521216 - 522292 + | putative FMN-dependent dioxygenase TERM 684 522296 - 522335 + F 78 -10.2 -2.70044 | opp_overlap 522296 522301 522304, overlap 522294 522301 ATTAGGAGATAGATA TCAAAGAAGGTGCTGAAA AATT TTGCAGCATCTTCTTTTA GCTTTTTATAGAATA TERM 685 522301 - 522330 + F 100 -10.1 -4.5115 | opp_overlap 522296 522301 522304, overlap 522296 522294 GAGATAGATATCAAA GAAGGTGCTGAAA AATT TTGCAGCATCTTC TTTTAGCTTTTTATA TERM 686 522330 - 522301 - f 76 -7.9 -3.92267 | opp_overlap 522301 522296 522294, overlap 522296 522304 GAGATAGATATCAAA GAAGGTGCTGAAA AATT TTGCAGCATCTTC TTTTAGCTTTTTATA Sca_0525 522417 - 523265 + | hypothetical protein TERM 687 523814 - 523835 + G 78 -10.3 -2.99459 | GGAATCGGCGGCGGG GCATTAATG ACAC CATTAATGC TGATTGTGTTTAGAT Sca_0526 523277 - 524101 + | hypothetical protein TERM 688 524313 - 524297 - g 78 -3.7 -5.42259 | overlap 524299 CCATGGCCAAAAAAA CGTTCAA CTA TTGAATG CTGCTCATTGTGATA Sca_0527 524118 - 525437 + | putative 5-nucleotidase lipA 525521 - 526453 + | putative lipoic acid synthetase TERM 689 526486 - 526501 + F 89 -9 -4.67692 | opp_overlap 526479 GAAAATTAGAAAGGG CGAGTC AAAA GACTCG TTTCTTTCATTTTAA TERM 690 526536 - 526567 + F 100 -8.9 -5.25699 | opp_overlap 526536 TTGGGTTTTAAGAGA CTTAGGTGCCATA ATGGGA TATGGTATCTAAG TTTTTGTTGTATAAT Sca_0529 526637 - 527029 + | hypothetical protein TERM 691 527076 - 527030 - T 100 -11.9 -4.03888 | opp_overlap 527035, overlap 527035 GAGCCAGAACAATAA TAAAAGGTTGAGATATCATTC ATCAA AATTGATATCTCAACCTTTTT AATTAGTATTCCCCG TERM 692 527071 - 527035 - T 100 -11.8 -5.01823 | opp_overlap 527035, overlap 527030 AGAACAATAATAAAA GGTTGAGATATCATTC ATCAA AATTGATATCTCAACC TTTTTAATTAGTATT TERM 693 527035 - 527071 + T 100 -11.1 -4.92777 | opp_overlap 527030 527035 AGAACAATAATAAAA GGTTGAGATATCATT CATCAAA ATTGATATCTCAACC TTTTTAATTAGTATT Sca_0530 527372 - 527079 - | hypothetical protein TERM 694 527837 - 527848 + G 70 -3 -5.08824 | opp_overlap 527846 TCGTAATTTTATTGA TGAA GTAA TTCA TTTTTTAAATAACGA Sca_0531 527472 - 527903 + | hypothetical protein Sca_0532 527908 - 528687 + | putative hydrolase of the HAD superfamily TERM 695 529385 - 529372 - g 84 -4.5 -5.47218 | opp_overlap 529372, overlap 529352 CTGCATTTAAAAAAA TGCGC AACG ACGCA ATTTTTATCAATATC Sca_0533 528696 - 529667 + | putative D-isomer specific 2-hydroxyacid dehydrogenase TERM 696 529713 - 529678 - f 93 -11.5 -3.37018 | gap 1, opp_overlap 529678, overlap 529672 529670 AATAAAGTATATGAA GCAGCATTTATC-TAT GATTT ATAGGATAAATGCTGC TTTTTTAATAATTTT TERM 697 529678 - 529713 + F 100 -12.2 -5.25656 | gap 1, opp_overlap 529672 529670 529678 AATAAAGTATATGAA GCAGCATTTAT-CTATG ATT TATAGGATAAATGCTGC TTTTTTAATAATTTT dltA 530259 - 531713 + | D-alanine-D-alanyl carrier protein ligase TERM 698 532397 - 532419 + G 70 -5.7 -4.40804 | gap 1, opp_overlap 532387, overlap 532401 CAATACGGCGTAATG CCATTGCAAA TGCA TTTGCA-TGG TTTTGTAAGATACTG dltB 531713 - 532927 + | DltB membrane protein dltC 532950 - 533186 + | D-alanyl carrier protein TERM 699 533864 - 533852 - g 73 -3.3 -5.10029 | ATGAACTTTAAAAAA GTACC ATT GGAAC ATGTTAAACCTGTTA dltD 533183 - 534337 + | poly D-alanine transfer protein TERM 700 534353 - 534383 + F 100 -9.2 -5.79588 | opp_overlap 534353 TATCAATAATAAAGG CAAGATACAATGTT AAA GATGTTGTATCTTG TTTTTTTACTTTTGG Sca_0538 534521 - 536569 + | putative cation exporting ATPase TERM 701 536579 - 536602 + F 86 -7.4 -5.20783 | opp_overlap 536579 GATTGAATTTTGAAA CTCGTGCTGT ATTA ACAGTTCGAG TTTTTCTATTTCAAT Sca_0539 536746 - 537516 + | putative MerR family transcriptional regulator TERM 702 537551 - 537521 - T 100 -9.9 -5.76237 | gap 1, opp_overlap 537521 537524 CACATAAATAAAAAA GAAGCATCAGCTGA ATTA TCAGCTAA-GCTTC TCTTAAAAATGCTTT Sca_0540 537823 - 537581 - | hypothetical protein with NifU domain Sca_0541 537917 - 538237 + | hypothetical protein TERM 703 538281 - 538259 - f 75 -4.8 -5.17488 | opp_overlap 538260, overlap 538260 AAGATGAAAATAAAA GGGCGACTTA TAT TAAGTTGCCT TTGTTTCTTTGGAGA TERM 704 538260 - 538280 + F 100 -10.5 -4.78326 | opp_overlap 538259 538260 AGATGAAAATAAAAG GGCGACTTA TAT TAAGTTGCC TTTGTTTCTTTGGAG TERM 705 538280 - 538260 - f 74 -8.3 -3.68052 | opp_overlap 538260, overlap 538259 AGATGAAAATAAAAG GGCGACTTA TAT TAAGTTGCC TTTGTTTCTTTGGAG TERM 706 538387 - 538363 - g 76 -4.3 -5.10933 | opp_overlap 538382 TTATCCAAAAGAAAA CTTCAAGAAAA AGA TTATCCCGAAG CGTTGGATATTTGGG Sca_0542 538342 - 538773 + | putative acetyltransferase TERM 707 538812 - 538783 - T 91 -10.9 -3.71149 | opp_overlap 538788 538790, overlap 538788 TTATAATAGATACAA CAAAAGCCAGGAT TTTC ATCCTGACTTTTA ATAATAATTGATTTT TERM 708 538807 - 538788 - T 93 -8.6 -4.88495 | opp_overlap 538788 538790, overlap 538783 ATAGATACAACAAAA GCCAGGAT TTTC ATCCTGAC TTTTAATAATAATTG TERM 709 538788 - 538807 + T 72 -6.4 -4.33105 | opp_overlap 538788 538783, overlap 538790 ATAGATACAACAAAA GCCAGGAT TTTC ATCCTGAC TTTTAATAATAATTG Sca_0543 539890 - 538826 - | putative pyridine nucleotide-disulphide oxidoreductase Sca_0544 540132 - 540368 + | hypothetical protein Sca_0545 540412 - 540771 + | conserved hypothetical protein with HesB-like domain TERM 710 540791 - 540827 + F 74 -3 -5.46129 | gap 1 TAAACGATATTATAA GAGTTGGGTAGGTGGCT TTTA AGCT-TCAACGCAACTC TTTTTTCATTTATTA TERM 711 541546 - 541534 - g 78 -4.1 -5.27335 | opp_overlap 541534 TCTTCTAAAGAAAAA GATCC TAA AGATC TTGCATTCTTAGTAG Sca_0546 541075 - 542280 + | putative NADH dehydrogenase TERM 712 542337 - 542373 + F 90 -6.8 -5.60993 | gap 1, opp_overlap 542337 GATAAAGATTACAAA GGTTGGTAATACTGT GCTAATAA ACAGTGTT-CCAACC TTTTTTTATAACGGA TERM 713 543518 - 543533 + G 70 -9 -3.06183 | TGCTACCTTAACTGG TGCTGC TGTT GCAGCA TTGGGTGAAGATAAA TERM 714 543584 - 543566 - g 78 -6.8 -4.56775 | AGCTGTCTTTAAAAA TAATAGTG ATG CACCATTA GAAGAGATTACTAAA Sca_0547 542400 - 543887 + | cytosol aminopeptidase family protein TERM 715 543897 - 543933 + F 100 -12 -5.12707 | gap 1, opp_overlap 543897 AAATAAAATGAAAAA GCACTTGAATTT-TATA ATAT TATATAAATTCAAGTGC TTTTTTCAAATTTAA TERM 716 543933 - 543897 - f 100 -12 -5.19819 | gap 1, opp_overlap 543897 AAATAAAATGAAAAA GCACTTGAATTT-TATA ATAT TATATAAATTCAAGTGC TTTTTTCAAATTTAA Sca_0548 544051 - 545367 + | putative permease Sca_0549 545398 - 545772 + | hypothetical protein TERM 717 545840 - 545800 - T 100 -15.7 -4.70626 | opp_overlap 545800 545804, overlap 545804 TAACAATCCTAAAAA GAAAGGTTTCCTATGTTTA TTC TGAGCATAGGAAACCTTTC TTTTTAATATATTTA TERM 718 545800 - 545840 + T 100 -20.1 -4.90217 | opp_overlap 545800 545804, overlap 545804 TAACAATCCTAAAAA GAAAGGTTTCCTATGTTTA TTC TGAGCATAGGAAACCTTTC TTTTTAATATATTTA TERM 719 545804 - 545836 + T 100 -15.1 -4.94262 | opp_overlap 545800 545804, overlap 545800 AATCCTAAAAAGAAA GGTTTCCTATGTTTA TTC TGAGCATAGGAAACC TTTCTTTTTAATATA TERM 720 545836 - 545804 - T 100 -10.7 -4.88293 | opp_overlap 545804 545800, overlap 545800 AATCCTAAAAAGAAA GGTTTCCTATGTTTA TTC TGAGCATAGGAAACC TTTCTTTTTAATATA Sca_0550 547057 - 545909 - | hypothetical protein TERM 721 547180 - 547145 - R 100 -8.3 -5.83211 | opp_overlap 547145 CATCAAAACAAAAAA GCCTTGAGAAAGCCT GCTGAA AGGCTGACTCAAGAC TTCATGTAATGATTT mnhG 547568 - 547194 - | putative Na+/H+ antiporter subunit mnhF 547836 - 547540 - | putative Na+/H+ antiporter subunit mnhE 548315 - 547836 - | putative Na+/H+ antiporter subunit mnhD 549813 - 548317 - | putative Na+/H+-antiporter subunit TERM 722 548650 - 548638 - G 73 -6.9 -4.07885 | overlap 548639 CATTTTTCCGTAAAA GCCGC TGA ACGGC GGAATACCAGCTAAG TERM 723 548886 - 548906 + g 81 -4.1 -5.59357 | opp_overlap 548869 548899, overlap 548869 TGATGCCGACTGCAA TCATAATAT TAT ATATAATGA TTTTTTTCGTATCAT TERM 724 549731 - 549719 - G 73 -6.3 -4.4017 | CCAAGTGCCACAAAA CGTTT AAT AAACG GACGTTTACCGATAA mnhC 550150 - 549806 - | putative Na+/H+ antiporter subunit TERM 725 549908 - 549896 - G 74 -7.7 -3.87584 | AAGTACAAGGAAGAA TGCTG TTA CAGCA AATGAGATGACGATA mnhB 550515 - 550150 - | putative Na+/H+ antiporter subunit TERM 726 550291 - 550279 - G 72 -7.7 -3.66921 | AAGCGGAATTTCAAA TACGC GAT GCGTA AAGAAGTTCTTGCCG mnhA 552976 - 550559 - | putative Na+/H+ antiporter subunit TERM 727 551240 - 551223 - G 83 -6.9 -4.73613 | opp_overlap 551222 TTATTACGAATAAAA CCGCTCA TATA TGTGCGG GTAACTTTCTTAGAG TERM 728 552566 - 552543 - G 91 -6.8 -5.4148 | GAAATAAGTAAAAAA CTAGAAAATG ATGT CATTTCCCAG AACAAATACAGCATA Sca_0558 553495 - 553112 - | hypothetical protein Sca_0559 553567 - 554160 + | putative peptidyl-prolyl cis-trans isomerase TERM 729 554188 - 554228 + F 83 -10 -3.64703 | opp_overlap 554194, overlap 554194 TTAAAATAAGATGTG TAAAAAGTAGAAATGTGT CATGC GCGCATTTCTACTTTCTA TTTGCATAAAAAAGA TERM 730 554222 - 554194 - f 76 -6.1 -4.62302 | opp_overlap 554188 554194 TAAGATGTGTAAAAA GTAGAAATGTG TCATGCG CGCATTTCTAC TTTCTATTTGCATAA TERM 731 554194 - 554222 + F 84 -9 -4.35044 | opp_overlap 554194, overlap 554188 TAAGATGTGTAAAAA GTAGAAATGTGT CATGC GCGCATTTCTAC TTTCTATTTGCATAA Sca_0560 554262 - 554528 + | hypothetical protein TERM 732 554704 - 554692 - g 72 -7.7 -3.72453 | ATCAACAAGGCGAAA TGCTG ATT CAGCA GCGCAAATATGATAA Sca_0561 554556 - 555083 + | hypothetical protein with NUDIX hydrolase signature Sca_0562 555235 - 555621 + | hypothetical protein with S1 RNA binding domain TERM 733 555699 - 555661 - f 80 -9.7 -3.23152 | opp_overlap 555663, overlap 555647 555663 555674 ATATTAATCTATTAA TAGGTCAGTATAAGCAT ATTTA ATGCTCATACTGGCCTT TTGTTTTGAACACAT TERM 734 555663 - 555697 + F 100 -12.3 -5.07652 | opp_overlap 555663 555661 555674 ATTAATCTATTAATA GGTCAGTATAAGCAT ATTTA ATGCTCATACTGGCC TTTTGTTTTGAACAC TERM 735 555697 - 555663 - f 100 -12.3 -3.17586 | opp_overlap 555663, overlap 555661 555674 ATTAATCTATTAATA GGTCAGTATAAGCAT ATTTA ATGCTCATACTGGCC TTTTGTTTTGAACAC TERM 736 556346 - 556326 - g 76 -7.5 -4.18044 | CGAGAAACAATTAAA GCATTTGGC GAA GCCACACGC CGTGCGATTGAAGCT Sca_0563 555864 - 556991 + | putative NADH-dependent flavin oxidoreductase TERM 737 557002 - 557026 + F 100 -12.3 -5.00642 | opp_overlap 557002 557001 AATAATTTTATGAAG CTGCATATTCA ATT TGGATATGCAG TTTTTATATAGATTA TERM 738 557026 - 557002 - f 75 -10.1 -2.51738 | opp_overlap 557002, overlap 557001 AATAATTTTATGAAG CTGCATATTCA ATT TGGATATGCAG TTTTTATATAGATTA TERM 739 558571 - 558585 + G 71 -7.2 -3.85817 | CAACTGAATATGGTT TAACAG GTG CTGTTA TTTCTAACAACCGCT rocA 557244 - 558788 + | 1-pyrroline-5-carboxylate dehydrogenase rocD 558968 - 560158 + | ornithine aminotransferase TERM 740 561493 - 561474 - g 84 -10 -3.76402 | ATCGTAGGTATTAAA CGTACAGC AGAA GCTGCACG TTACCGCGGATGGGC gudB 560268 - 561512 + | NAD-specific glutamate dehydrogenase TERM 741 561533 - 561562 + F 100 -10.8 -6.20267 | opp_overlap 561533 AAATTTTTTGGGAAA CGGCTATACCAG AGTATA CTGGTGTAGTCG TTTTTTTGTTTTTAA TERM 742 561606 - 561592 - f 73 -5.7 -4.6644 | opp_overlap 561592 561591 AAGATATTTGAAAAA GCAGA TTTTG TCTGC GTTTGACTAGCAGTA Sca_0567 561745 - 562707 + | putative amidohydrolase TERM 743 562724 - 562771 + T 100 -16.7 -3.06228 | opp_overlap 562729, overlap 562729 TTCTAAATACAAATA AAAAAGTCGTTTTCTGATACA CAAATA TGTGTCAGAAAACGACTTTTC CTTGTTTATAATAAA TERM 744 562766 - 562729 - T 100 -15.1 -5.7827 | opp_overlap 562724 562729 AATACAAATAAAAAA GTCGTTTTCTGATACAC AAAT ATGTGTCAGAAAACGAC TTTTCCTTGTTTATA TERM 745 562729 - 562766 + T 100 -16.6 -4.64613 | opp_overlap 562729, overlap 562724 AATACAAATAAAAAA GTCGTTTTCTGATACA CAAATA TGTGTCAGAAAACGAC TTTTCCTTGTTTATA argH 564150 - 562777 - | putative argininosuccinate lyase TERM 746 563137 - 563127 - G 73 -5.4 -4.61633 | ACATACCTTCAAAAA TTCG AAG CGAA CCTGTAACTGTATGT argG 565345 - 564140 - | putative argininosuccinate synthase pgiA 565693 - 567024 + | glucose-6-phosphate isomerase A TERM 747 567044 - 567080 + F 100 -11.8 -5.73339 | opp_overlap 567044, overlap 567046 AATGAAATAATATGA TTCCTTACAACTGGAG ACTGA TTTCAGTTGTAAGGGA TTTTTTTATACTTAT TERM 748 567046 - 567078 + F 100 -12.2 -2.99311 | opp_overlap 567044, overlap 567044 TGAAATAATATGATT CCTTACAACTGGAG ACTGA TTTCAGTTGTAAGG GATTTTTTTATACTT TERM 749 567536 - 567526 - g 72 -8.2 -3.53444 | opp_overlap 567526 567524 567522, overlap 567522 TTTGTTAATAAGCAA GGCG TTA CGCC TATCTTTATAATGCT TERM 750 567526 - 567536 + G 70 -8.2 -3.3663 | opp_overlap 567522 567526, overlap 567524 567522 TTTGTTAATAAGCAA GGCG TTA CGCC TATCTTTATAATGCT orf1 567229 - 567792 + | hypothetical protein sipA 567805 - 568329 + | type-I signal peptidase sipB 568346 - 568915 + | type-1 signal peptidase 1B TERM 751 568997 - 568966 - f 100 -8.8 -5.2015 | opp_overlap 568966 TGAATAAGAGAAAAA GCTGATACTATTAC GTTT GATATAGTATCAGC TTTTTTGGTATATGA TERM 752 568966 - 568997 + F 100 -8.8 -5.24989 | opp_overlap 568966 TGAATAAGAGAAAAA GCTGATACTATTAC GTTT GATATAGTATCAGC TTTTTTGGTATATGA addB 569078 - 572545 + | putative ATP-dependent nuclease subunit B addA 572542 - 576204 + | putative ATP-dependent nuclease, subunit A TERM 753 576304 - 576319 + F 71 -4.8 -4.84761 | opp_overlap 576293, overlap 576318 AAAATTTGAGAAACT TAACAA ATAT TTGTTA TTTTTCTGAAAATAT Sca_0576 576378 - 577286 + | fumarylacetoacetate (FAA) hydrolase family protein TERM 754 577305 - 577345 + T 100 -17.9 -5.626 | opp_overlap 577303 577302 577316 GAAATAATAATAGCT GAGATTAGGAATGGGTTGT GAT GCAACTCATTTCTAATCTC TTTTTTTGTGCAATA TERM 755 577400 - 577366 - T 85 -5.9 -5.4505 | gap 2, opp_overlap 577361 577359 577366 TTGTGCAATAAAAAA CTCTGCTGAACATCGTT ATA AAAGATG--CAGCAGAG TTTTATTAATATATT TERM 756 577366 - 577400 + T 75 -5.9 -4.77983 | gap 2, opp_overlap 577366, overlap 577361 577359 TTGTGCAATAAAAAA CTCTGCTGAACATCGTT ATA AAAGATG--CAGCAGAG TTTTATTAATATATT Sca_0577 577809 - 577414 - | hypothetical protein cdr 579252 - 577930 - | coenzyme A disulfide reductase TERM 757 578785 - 578803 + g 71 -5.2 -4.70626 | overlap 578786 CAATGAAATGTATCC CGCACCTA TAA TGGGTGCC TTTTTGACGTTGTTA TERM 758 578786 - 578802 + g 73 -8.7 -3.41291 | overlap 578785 AATGAAATGTATCCC GCACCTA TAA TGGGTGC CTTTTTGACGTTGTT Sca_0579 580209 - 579364 - | Predicted hydrolases of the HAD superfamily Sca_0580 580508 - 580816 + | hypothetical protein Sca_0581 581131 - 582966 + | putative membrane protein with acyltransferase 3 family domain TERM 759 583023 - 582984 - f 71 -8.6 -2.74078 | opp_overlap 582984 582987 582988, overlap 582981 AGTAAAGTAAATGTA GATTCGAGGGTTGGATTC AATG AAATCCAATCCTCGCTTC TTTTTAATTTTTTTC TERM 760 582984 - 583023 + F 100 -10.1 -5.31158 | opp_overlap 582984 582981, overlap 582987 582988 AGTAAAGTAAATGTA GATTCGAGGGTTGGATT CAATGA AATCCAATCCTCGCTTC TTTTTAATTTTTTTC TERM 761 582987 - 583020 + F 100 -10.4 -4.64346 | opp_overlap 582984 582981, overlap 582984 582988 AAAGTAAATGTAGAT TCGAGGGTTGGATT CAATGA AATCCAATCCTCGC TTCTTTTTAATTTTT TERM 762 582988 - 583019 + F 100 -13.9 -3.34947 | opp_overlap 582984 582981, overlap 582987 582984 AAGTAAATGTAGATT CGAGGGTTGGATT CAATGA AATCCAATCCTCG CTTCTTTTTAATTTT TERM 763 584533 - 584522 - g 74 -3 -5.4182 | AATGAGAAAGAAAAA CAAT CAGC ATTG CAATCTCGCGTAGAA clpB 583163 - 585772 + | ClpB chaperone TERM 764 585786 - 585820 + T 100 -12.2 -5.26316 | opp_overlap 585786, overlap 585816 AAGATAAAACAAAAA TGCTGGAATCTCTTGG TTT TCTCGAGATTCCAGCA TTTTTTGTAAAATAA TERM 765 585820 - 585786 - T 100 -11.5 -5.60556 | opp_overlap 585786 585816 AAGATAAAACAAAAA TGCTGGAATCTCTTG GTTTT CTCGAGATTCCAGCA TTTTTTGTAAAATAA TERM 766 585858 - 585840 - T 100 -8.2 -5.79595 | opp_overlap 585816 585840 TTGTAAAATAAAAAA TCCAGTAT TAA ATACCGGA TTTAATGTCGATATG Sca_0583 586077 - 585874 - | hypothetical protein TERM 767 586312 - 586296 - H 72 -6.7 -4.16121 | opp_overlap 586307 GAAAAATATGATAAA TTAATAC CTG GTATTAA AAATATTTTTAAGAA FabH 586339 - 587280 + | putative 3-oxoacyl-[acyl-carrier-protein] synthase III TERM 768 587968 - 587978 + G 77 -8.2 -3.97947 | opp_overlap 587968 587967 GTCCATTCCAAGAAG GCCG TGA CGGC TTTGTAATGGGTGAA fab 587292 - 588536 + | 3-oxoacyl-[acyl-carrier-protein] synthase II TERM 769 588574 - 588609 + F 100 -15 -5.85244 | opp_overlap 588568 588574 ATTAAGAAATGATAA GCATTTGAAGCGGTTA TTTT TAATCGTTTCAAATGC TTTTTTCTTTTAATT TERM 770 588609 - 588574 - f 85 -10.6 -3.69564 | opp_overlap 588574, overlap 588568 ATTAAGAAATGATAA GCATTTGAAGCGGTTA TTTT TAATCGTTTCAAATGC TTTTTTCTTTTAATT Sca_0586 588792 - 590030 + | putative permease of the major facilitator superfamily TERM 771 590059 - 590042 - T 83 -6.9 -5.10877 | opp_overlap 590042, overlap 590036 ATAATAAATTAAAAA CGGCGAC GTTA GTTGCCG TTTTTTTCTAAAAAG TERM 772 590042 - 590059 + T 100 -9.1 -5.60993 | opp_overlap 590042 590036 ATAATAAATTAAAAA CGGCGAC GTTA GTTGCCG TTTTTTTCTAAAAAG Sca_0587 590441 - 590067 - | hypothetical protein oppB 590713 - 591639 + | oligopeptide transport system permease protein homolog OppB oppC 591639 - 592703 + | putative oligopeptide transport system permease protein OppC oppD 592718 - 593800 + | oligopeptide transport system ATP-binding protein OppD oppF 593790 - 594833 + | oligopeptide transport system ATP-binding protein OppF TERM 773 595547 - 595534 - g 78 -6.7 -4.53777 | TTTAATGAAAAAGAA CCCAA AATA TTGGG ATAAAAAAGCAGTTA oppA 594848 - 596512 + | putative peptide binding protein OppA TERM 774 596566 - 596588 + F 100 -9.9 -5.01811 | opp_overlap 596565 596566 ATCTATATAATAAAG CACACAGTC AATTC GGCTGTGTG TTTTTGGTTTGCTGA TERM 775 596588 - 596566 - f 72 -8.4 -3.23276 | opp_overlap 596566, overlap 596565 ATCTATATAATAAAG CACACAGTCA ATT CGGCTGTGTG TTTTTGGTTTGCTGA Sca_0593 596675 - 597676 + | hypothetical protein with nucleic acid binding motif TERM 776 597962 - 597986 + F 100 -8.7 -5.56263 | ATAGAGTCTTTTCTG CGCATTCAT AAATAAA ATGAATGCG TTTTTATTTTATCAT thiC' 598054 - 599457 + | truncated thiamin biosynthesis protein ThiC (fragment 1) thiC'' 599388 - 599798 + | truncated thiamine biosynthesis protein ThiC (fragment 2) TERM 777 599852 - 599806 - T 100 -9.8 -4.80656 | opp_overlap 599806 ATCAATAATATAAAA TCCCTCTATTAA-CATTTCGCT TATTC AGCGAC-TGCTTAATAGAGGGA TTTATTATTTAATGA TERM 778 599806 - 599852 + T 100 -9.8 -4.60258 | opp_overlap 599806 ATCAATAATATAAAA TCCCTCTATTAA-CATTTCGCT TATTC AGCGAC-TGCTTAATAGAGGGA TTTATTATTTAATGA TERM 779 600291 - 600269 - T 100 -12.8 -5.27779 | opp_overlap 600269 600271 TGTAAGATTAAAAAA TGCACCCTAA AAT TCAGGGTGCA TTTCAGTGTGTAATA TERM 780 600269 - 600291 + T 89 -10.6 -3.74792 | opp_overlap 600269, overlap 600271 TGTAAGATTAAAAAA TGCACCCTAA AAT TCAGGGTGCA TTTCAGTGTGTAATA trpS 601304 - 600309 - | tryptophanyl-tRNA synthetase Sca_0597 601701 - 602099 + | putative ArsC family protein TERM 781 602127 - 602162 + F 70 -8.4 -3.09831 | opp_overlap 602119, overlap 602133 AACTGAATTACCATG TAAGGAGCTGCAGTAC AGTT GTGCTGTGGCTTTTTA TGATTTTGAAATGCA TERM 782 602133 - 602156 + F 86 -7.4 -5.09245 | overlap 602127 ATTACCATGTAAGGA GCTGCAGTAC AGTT GTGCTGTGGC TTTTTATGATTTTGA TERM 783 602338 - 602368 + F 74 -6.2 -4.44797 | opp_overlap 602337, overlap 602335 AAAAGTAGACCATAC CTAGACTCTAGGAA GTT TGTCTAAAGTCTAG TTTTGCTATTCATCG Sca_0598 602404 - 603120 + | putative MecA family protein TERM 784 603156 - 603194 + F 100 -16.2 -4.93968 | opp_overlap 603152 603150 TCTATTATATATTGA GCCCCTAAAATCGAGTGT TAA AAATTCGGTTTTAGGGGC TTTTTAGTTATAAAT TERM 785 603528 - 603508 - g 77 -8.4 -3.86822 | opp_overlap 603508, overlap 603527 GAAGCGTTCGAGAAA GCTTTCAA AGATG TTGAAAGC TACTTAGGAGCTGAA pepF 603409 - 605217 + | oligoendopeptidase F TERM 786 605388 - 605409 + T 100 -11.6 -6.09888 | ATCCCCTTTGTTTAG CGCCGTGT CTGAAT ACACGGCG TTTTTTTTATTGGAA TERM 787 605489 - 605444 - T 100 -15.7 -4.57474 | gap 1, opp_overlap 605447, overlap 605447 TTAATTGATATAAAA TAATACCGGCA-GTGCATGAAT TGA ATTCATGCTCCTGCCGGTATTT TAACTTTATTGTATA TERM 788 605447 - 605486 + T 100 -17.4 -4.43755 | gap 1, opp_overlap 605447 605444 ATTGATATAAAATAA TACCGGCA-GTGCATGAAT TGA ATTCATGCTCCTGCCGGTA TTTTAACTTTATTGT TERM 789 605486 - 605447 - T 100 -17.4 -4.38744 | gap 1, opp_overlap 605447, overlap 605444 ATTGATATAAAATAA TACCGGCA-GTGCATGAAT TGA ATTCATGCTCCTGCCGGTA TTTTAACTTTATTGT Sca_0600 605871 - 605542 - | hypothetical protein Sca_0601 606462 - 605902 - | truncated thiol protease-like protein (fragment 2) Sca_0602 607061 - 606522 - | truncated thiol protease-like protein (fragment 1) TERM 790 607446 - 607411 - R 100 -14.4 -5.0133 | gap 1 CACTTGCCTAAAAAA TAGCTTAACC-AAAAGT TGT ACTTTTTGGTTAAGCTA CTGAATGTGCAAGTG TERM 791 607500 - 607514 + r 71 -2.1 -5.41787 | overlap 607487 607501 TTTCCAGAAGTCGCC TTCAG GATTG CTGAG TTTTTCTATTTTTTG Sca_0603 608261 - 607476 - | putative dithiol-disulfide isomerase Sca_0604 608648 - 608277 - | bacterial-like globin family protein Sca_0605 609323 - 608751 - | hypothetical protein with CYTH domain Sca_0606 609476 - 609823 + | hypothetical protein Sca_0607 609840 - 610475 + | hypothetical protein TERM 792 610610 - 610587 - g 74 -8.2 -3.80569 | TAAAAGATACCGAAA CGCCTGAAAT TGTC ATTTCAGTCG GTGGGGACGGGACGC Sca_0608 610484 - 611293 + | putative kinase Sca_0609 611293 - 612177 + | putative pseudouridylate synthase TERM 793 612230 - 612219 - g 74 -3 -5.38321 | AAAGACGATAAAAAA TTCA TGGA TGAA AAAGAAGTATATAAT Sca_0610 612198 - 613580 + | putative divalent cation transporter Sca_0611 613591 - 615447 + | putative cation transport system TERM 794 615465 - 615503 + F 76 -7.7 -3.88331 | gap 1, opp_overlap 615458 615470, overlap 615470 615493 GTTATAAAGATTTTA GAAATCCTTCGGTATATT GAAA AGTATAC-GGAGGGTTTC TTCGTTTTATTTAAG TERM 795 615470 - 615499 + F 74 -6.5 -4.49531 | opp_overlap 615470, overlap 615465 615493 AAAGATTTTAGAAAT CCTTCGGTATATT GAAA AGTATACGGAGGG TTTCTTCGTTTTATT TERM 796 615493 - 615507 + F 70 -4.2 -4.88405 | opp_overlap 615470, overlap 615470 615465 ATATTGAAAAGTATA CGGAGG GTT TCTTCG TTTTATTTAAGAGTT TERM 797 615812 - 615798 - g 70 -2.9 -5.18357 | GAACGCAGTAAAAAA CAATT AGAAA AATTG TACGATCAATTAAAT fabI 615660 - 616430 + | putative trans-2-enoyl-ACP reductase TERM 798 616474 - 616446 - f 71 -7.4 -3.83502 | opp_overlap 616446 TAGTTCTATACTAAA TCGGACTGGTGA GAAAA TCACTCGTCCGA TTTTTTGATATAAAA TERM 799 616446 - 616474 + F 100 -9.6 -5.21709 | opp_overlap 616446 TAGTTCTATACTAAA TCGGACTGGTGA GAAAA TCACTCGTCCGA TTTTTTGATATAAAA TERM 800 616629 - 616669 + F 71 -7.7 -3.53224 | opp_overlap 616636, overlap 616636 TGAAGAAAAAGAGTA TAAAAAAGGTTAAGCAGCT AAA AGTTGCTTAACCTCTATAA TTTGAGCAGCCAGTC TERM 801 616636 - 616662 + F 100 -14.6 -3.05769 | opp_overlap 616636, overlap 616629 AAAGAGTATAAAAAA GGTTAAGCAGCT AAA AGTTGCTTAACC TCTATAATTTGAGCA TERM 802 616662 - 616636 - f 100 -12.4 -5.38321 | opp_overlap 616629 616636 AAAGAGTATAAAAAA GGTTAAGCAGCT AAA AGTTGCTTAACC TCTATAATTTGAGCA TERM 803 616724 - 616749 + F 95 -7.7 -5.36441 | gap 1 AATATGTATCTATTA CTCTGTA-CCTA TTT TGGGTTACAGAG TTTTTTGTATAAAAA Sca_0613 616848 - 618086 + | putative transporter protein TERM 804 618133 - 618089 - T 100 -9.6 -4.5538 | gap 1, opp_overlap 618093, overlap 618080 618093 AGAAAACGCATAAAA TTAAGCGCTGTAATT-TCTTT TTAA AGAGATAATTACAGCGCTTTA TTGTAGAAGTAACAG TERM 805 618093 - 618129 + T 100 -12.6 -4.31433 | gap 1, opp_overlap 618080 618093 618089 AACGCATAAAATTAA GCGCTGTAATT-TCTTT TTAA AGAGATAATTACAGCGC TTTATTGTAGAAGTA TERM 806 618129 - 618093 - T 89 -10.4 -3.76789 | gap 1, opp_overlap 618093, overlap 618080 618089 AACGCATAAAATTAA GCGCTGTAATT-TCTTT TTAA AGAGATAATTACAGCGC TTTATTGTAGAAGTA TERM 807 618137 - 618195 + T 70 -4.4 -4.88222 | gap 3, opp_overlap 618143 618146, overlap 618141 618143 618146 618192 TACAGCGCTTTATTG T-AG-AA-GTAACAGGCGTGCATACTT ATTTGTTC AAGTATGCACGCCTGTTATGTTGTTAA TTTTTAAGTTTTAAT TERM 808 618141 - 618188 + T 100 -16.6 -4.0257 | opp_overlap 618143 618146, overlap 618137 618143 618146 GCGCTTTATTGTAGA AGTAACAGGCGTGCATACTT ATTTGTTC AAGTATGCACGCCTGTTATG TTGTTAATTTTTAAG TERM 809 618143 - 618186 + T 100 -21.4 -3.58785 | opp_overlap 618143 618146, overlap 618141 618137 618146 GCTTTATTGTAGAAG TAACAGGCGTGCATACTT ATTTGTTC AAGTATGCACGCCTGTTA TGTTGTTAATTTTTA TERM 810 618186 - 618143 - T 100 -22.1 -2.59564 | opp_overlap 618143 618141 618137 618146, overlap 618146 GCTTTATTGTAGAAG TAACAGGCGTGCATACTTA TTTGTT CAAGTATGCACGCCTGTTA TGTTGTTAATTTTTA TERM 811 618146 - 618183 + T 100 -18.7 -3.88015 | opp_overlap 618143 618146, overlap 618143 618141 618137 TTATTGTAGAAGTAA CAGGCGTGCATACTT ATTTGTTC AAGTATGCACGCCTG TTATGTTGTTAATTT TERM 812 618183 - 618146 - T 100 -19.4 -3.45118 | opp_overlap 618146 618143 618141 618137, overlap 618143 TTATTGTAGAAGTAA CAGGCGTGCATACTTA TTTGTT CAAGTATGCACGCCTG TTATGTTGTTAATTT Sca_0614 619300 - 618215 - | hypothetical protein TERM 813 619441 - 619481 + r 100 -15.7 -2.68487 | opp_overlap 619441, overlap 619443 TGGTTATTGAAAGAA CATGGGTTCCAAAAGAA TTAAAGT TTCTCTTGGAACCCATG TCATATAATCATTGA TERM 814 619481 - 619441 - R 100 -17.9 -3.96216 | opp_overlap 619441 619443 TGGTTATTGAAAGAA CATGGGTTCCAAAAGAA TTAAAGT TTCTCTTGGAACCCATG TCATATAATCATTGA TERM 815 619443 - 619479 + r 100 -12.5 -2.88212 | opp_overlap 619441, overlap 619441 GTTATTGAAAGAACA TGGGTTCCAAAAGAA TTAAAGT TTCTCTTGGAACCCA TGTCATATAATCATT Sca_0615 621199 - 619553 - | sodium:alanine symporter family protein Sca_0616 621503 - 622240 + | putative esterase family protein Sca_0617 622337 - 622846 + | conserved hypothetical protein with LigT-like domain TERM 816 622998 - 623044 + T 100 -14.8 -4.83169 | gap 1, opp_overlap 623006, overlap 623006 TCATACTTTCATACA TAACAAAAGCGGCACTGATTC AAAATG GAATCAGTGCCGCTTTA-TTA TTTTTATGAAGAAAT TERM 817 623037 - 623006 - T 100 -18.9 -4.87592 | opp_overlap 623006 622998 TCATACATAACAAAA GCGGCACTGATTC AAAATG GAATCAGTGCCGC TTTATTATTTTTATG TERM 818 623006 - 623037 + T 100 -18.9 -4.80417 | opp_overlap 623006, overlap 622998 TCATACATAACAAAA GCGGCACTGATTC AAAATG GAATCAGTGCCGC TTTATTATTTTTATG Sca_0618 624253 - 623048 - | putative permease Sca_0619 625406 - 624231 - | putative glycosyl transferase murE 625803 - 627287 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase prfC 627521 - 629083 + | putative peptide chain release factor RF-3 TERM 819 629251 - 629282 + F 100 -9.5 -4.84311 | opp_overlap 629253 AAGAGACATTCAAGT GAGACCTTTGCTA TTTATT TAGCATGGGTCTC TTTTATTGTGTAAAA Sca_0624 629356 - 630171 + | putative TerC family integral membrane protein TERM 820 630190 - 630227 + F 79 -5 -5.18355 | gap 1, opp_overlap 630185 630192, overlap 630192 AGGAATGTAAGAAAA TGCTTTCTGATAG-GCC GAAAA GGTGCAATCAGAAAGTA TTTTTAATTTTTAGA TERM 821 631245 - 631276 + G 70 -2.9 -5.0916 | overlap 631247 631249 CGGAGAAATCGGCTC AGGTGTCGTCTAC AAAAAA GTAGGCGACTCTA TTTTTATATTAACAA TERM 822 631247 - 631274 + G 76 -7.7 -4.17211 | overlap 631245 631249 GAGAAATCGGCTCAG GTGTCGTCTAC AAAAAA GTAGGCGACTC TATTTTTATATTAAC TERM 823 631249 - 631272 + G 78 -8.9 -3.66691 | overlap 631247 631245 GAAATCGGCTCAGGT GTCGTCTAC AAAAAA GTAGGCGAC TCTATTTTTATATTA Sca_0625 630349 - 632100 + | putative protease Sca_0626 632118 - 633476 + | putative sodium transport protein TERM 824 633562 - 633513 - f 100 -28.5 -4.04149 | opp_overlap 633513 TAATCACATTATAAA TACGCACTTTATTGTAAATTCTG TTAG CAGAATTTACAATAAAGTGCGTA TTTTTTGCGTTATAC TERM 825 633513 - 633562 + F 100 -28.5 -5.1925 | opp_overlap 633513 TAATCACATTATAAA TACGCACTTTATTGTAAATTCTG TTAG CAGAATTTACAATAAAGTGCGTA TTTTTTGCGTTATAC Sca_0627 633695 - 634159 + | putative transcriptional regulator Sca_0628 634189 - 635511 + | putative pyridine nucleotide-disulfide oxidoreductase TERM 826 635557 - 635519 - T 93 -8.3 -5.04356 | gap 1, opp_overlap 635519, overlap 635523 TCAAATAAGTAAAAA TAAAGCGATGGTGATACT TTTC AGTG-CACCATCGCTTTG TTTTTGTATTATAGT TERM 827 635519 - 635557 + T 100 -12.7 -5.16133 | gap 1, opp_overlap 635519 635523 TCAAATAAGTAAAAA TAAAGCGATGGTGATACT TTTC AGTG-CACCATCGCTTTG TTTTTGTATTATAGT TERM 828 635553 - 635523 - T 100 -9.1 -4.98128 | gap 1, opp_overlap 635519, overlap 635519 ATAAGTAAAAATAAA GCGATGGTGATACT TTTC AGTG-CACCATCGC TTTGTTTTTGTATTA hisIE 636204 - 635575 - | putative histidine biosynthesis bifunctional protein HisIE hisF 636959 - 636195 - | putative imidazoleglycerol-phosphate synthase hisF hisA 637660 - 636956 - | putative phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisH 638234 - 637653 - | putative amidotransferase HisH hisB 638812 - 638231 - | putative imidazoleglycerol-phosphate dehydratase hisC 639794 - 638790 - | putative histidinol-phosphate transaminase hisD 641050 - 639791 - | putative histidinol dehydrogenase hisG 641657 - 641040 - | putative ATP phosphoribosyltransferase HisG hisZ 642500 - 641670 - | putative ATP phosphoribosyltransferase regulatory subunit TERM 829 642653 - 642632 - R 100 -11.6 -6.01725 | AATAAAAATAAAAAA TGAGGCGC ATGATA GCGCCTCA TAAATAAATCTATAT Sca_0638 643491 - 642676 - | putative hydrolase of alpha/beta fold family Sca_0639 643690 - 643941 + | truncated transcriptional regulator TERM 830 644379 - 644369 - g 78 -4 -5.40072 | opp_overlap 644355 644369 TTTTGGTTAAAAAAA TCAA ATA TTGA TATTTATAATAAATT Sca_0640 644330 - 644683 + | truncated Fic protein family protein (fragment 1) TERM 831 644842 - 644813 - g 79 -5 -5.12707 | overlap 644817 GTAAATTTGAAAAAA TCCATCCATTCC ATGATG GGAACGGAAGAA TTGGACGGTTCATAA Sca_0641 644716 - 645051 + | truncated Fic protein family protein (fragment 2) TERM 832 645720 - 645686 - T 100 -18.2 -6.00086 | opp_overlap 645686 AGAGGACAAAAAAAA TAGCTAGAAGCAATTA TTA TAACTGCTTCTAGCTA TTCTATGTAATTTAC TERM 833 645686 - 645720 + T 100 -16 -3.66787 | opp_overlap 645686 AGAGGACAAAAAAAA TAGCTAGAAGCAATTA TTA TAACTGCTTCTAGCTA TTCTATGTAATTTAC TERM 834 646016 - 645974 - T 86 -7.2 -5.07971 | GAAAATAACGAAAAA TAAGCGGAACATTTACACCA AAT TAATATGAATATCCCGCTTA TTAACTTACTACTAT Sca_0642 646627 - 646055 - | putative ComK family protein TERM 835 646189 - 646202 + g 70 -3.1 -4.93296 | TTTTAAGAAGATGTT CGTAA TAAA TTGCG TTTTTATACTGGTGG TERM 836 646728 - 646746 + H 75 -4.6 -5.04249 | AGTCAATAGAAACTT TAGTGTTA AAA TTACACTA TTTATTTTTTAAAAA Sca_0643 646840 - 647058 + | hypothetical protein TERM 837 647085 - 647124 + T 100 -11 -5.44837 | opp_overlap 647088, overlap 647088 GTTCCTGGGTAAAAT AAAGGACTATTCATTACT AATT AATAATGAATAGTCCTTA TTTTTGTGTTTTTTT TERM 838 647121 - 647088 - T 100 -14.9 -4.64861 | opp_overlap 647085 647088 CCTGGGTAAAATAAA GGACTATTCATTACT AATT AATAATGAATAGTCC TTATTTTTGTGTTTT TERM 839 647088 - 647121 + T 100 -12.7 -4.69512 | opp_overlap 647088, overlap 647085 CCTGGGTAAAATAAA GGACTATTCATTACT AATT AATAATGAATAGTCC TTATTTTTGTGTTTT Sca_0644 648124 - 647138 - | putative lipoate-protein ligase Sca_0645 648328 - 648513 + | hypothetical protein Sca_0646 648520 - 649122 + | hypothetical protein TERM 840 649168 - 649127 - T 100 -14.7 -3.92542 | opp_overlap 649132, overlap 649132 TTCATGGTTAAATAA TAAAACCTGGAATATTCCA TCTT CGGAATATCCCAGGTTTTT TTGCTATCAATATTT TERM 841 649132 - 649163 + T 100 -11.7 -5.58454 | opp_overlap 649127 649132 GGTTAAATAATAAAA CCTGGAATATTCC ATCTTC GGAATATCCCAGG TTTTTTTGCTATCAA TERM 842 649163 - 649132 - T 100 -14.6 -5.00196 | opp_overlap 649132, overlap 649127 GGTTAAATAATAAAA CCTGGAATATTCCA TCTT CGGAATATCCCAGG TTTTTTTGCTATCAA Sca_0647 649388 - 649182 - | hypothetical protein Sca_0648 649610 - 649401 - | hypothetical protein Sca_0649 649848 - 650417 + | hypothetical protein TERM 843 650433 - 650399 - T 88 -9.4 -4.07133 | opp_overlap 650405, overlap 650405 CATGGTTATAAATAA GAAAAACGCTGAACAA TAA CTGTTCAACGTTTCAC TACAATGATTATCTA TERM 844 650427 - 650405 - T 100 -9.2 -5.42164 | opp_overlap 650405, overlap 650399 TATAAATAAGAAAAA CGCTGAACAA TAA CTGTTCAACG TTTCACTACAATGAT Sca_0650 651384 - 650446 - | putative prenyltransferase menF 651606 - 652958 + | putative menaquinone-specific isochorismate synthase menD 652951 - 654618 + | putative menaquinone biosynthesis protein MenD Sca_0653 654611 - 655426 + | putative hydrolase menB 655419 - 656237 + | dihydroxynaphtoic acid synthetase TERM 845 656265 - 656282 + F 100 -11.3 -5.25893 | opp_overlap 656260 656265, overlap 656270 TTATATATAATCTAA GCTCCCT GAAA AGGGAGC TTTTTTAGTCTGTAT TERM 846 656282 - 656265 - f 93 -11.3 -3.27907 | opp_overlap 656265 656270, overlap 656260 TTATATATAATCTAA GCTCCCT GAAA AGGGAGC TTTTTTAGTCTGTAT TERM 847 656480 - 656498 + F 72 -7.6 -3.69069 | opp_overlap 656479 656480 656482 AAACCAGAATGAAAT TACTTTAA AAA TTAAAGTA TTATATTGACATTCA Sca_0655 656552 - 656911 + | putative transcriptional regulator, MarR type TERM 848 657087 - 657135 + T 83 -7.9 -4.54205 | gap 2, opp_overlap 657093, overlap 657088 657091 657093 ATTTACATTGGAATT TAA-AA-AGCGAGAGAGTATCTT AAATC AGGATACTTTCTCGCTATTATTA TTTATTTAATATAAT TERM 849 657088 - 657132 + T 100 -10.2 -4.36862 | opp_overlap 657093, overlap 657087 657091 657093 TTTACATTGGAATTT AAAAAGCGAGAGAGTATCTT AAATC AGGATACTTTCTCGCTATTA TTATTTATTTAATAT TERM 850 657091 - 657129 + T 100 -11.9 -4.26693 | opp_overlap 657093, overlap 657088 657087 657093 ACATTGGAATTTAAA AAGCGAGAGAGTATCTT AAATC AGGATACTTTCTCGCTA TTATTATTTATTTAA TERM 851 657093 - 657127 + T 100 -14.5 -3.7051 | opp_overlap 657093, overlap 657091 657088 657087 ATTGGAATTTAAAAA GCGAGAGAGTATCTT AAATC AGGATACTTTCTCGC TATTATTATTTATTT TERM 852 657127 - 657093 - T 100 -10.8 -4.74504 | opp_overlap 657093 657091 657088 657087 ATTGGAATTTAAAAA GCGAGAGAGTATCTTA AAT CAGGATACTTTCTCGC TATTATTATTTATTT Sca_0656 658300 - 657137 - | putative aminotransferase TERM 853 657427 - 657441 + g 77 -2.8 -5.47821 | AAGCCAATCGCGCTT TGTATG CCT CATTCA TTTTTTTAGGTGCAT TERM 854 658444 - 658416 - R 100 -8.9 -5.64321 | opp_overlap 658418, overlap 658418 AGAATAAAATAAAAA TAGCTGACTCACA GAA TATGAGCCAGCTG TTAAAACTAAGGTAC TERM 855 658442 - 658418 - R 100 -11.5 -4.41779 | opp_overlap 658418, overlap 658416 AATAAAATAAAAATA GCTGACTCACA GAA TATGAGCCAGC TGTTAAAACTAAGGT Sca_0657 659455 - 658451 - | hypothetical protein Sca_0658 659810 - 660229 + | putative transcriptional regulator, MarR type TERM 856 660292 - 660330 + T 100 -22 -3.03487 | opp_overlap 660292 660297, overlap 660297 GTGATTTTAGGCAAA CAAAAGGAACGCACTTCA ACT TGAAGAGCGTTCCTTTTG TAGTTGTTTAGCCTT TERM 857 660330 - 660292 - T 100 -22 -3.65902 | opp_overlap 660292 660297, overlap 660297 GTGATTTTAGGCAAA CAAAAGGAACGCACTTCA ACT TGAAGAGCGTTCCTTTTG TAGTTGTTTAGCCTT TERM 858 660325 - 660297 - T 100 -16.1 -4.90778 | opp_overlap 660292 660297, overlap 660292 TTTAGGCAAACAAAA GGAACGCACTTCA ACT TGAAGAGCGTTCC TTTTGTAGTTGTTTA TERM 859 660297 - 660325 + T 100 -16.1 -4.64157 | opp_overlap 660297 660292, overlap 660292 TTTAGGCAAACAAAA GGAACGCACTTCA ACT TGAAGAGCGTTCC TTTTGTAGTTGTTTA bph 664102 - 660338 - | bifunctional peptidoglycan hydrolase precursor TERM 860 660828 - 660863 + g 71 -4.8 -4.6575 | overlap 660829 TCTAAGATACCTTTT CCTTTCAACAATTGGT TAAC ACTGCTTGTTGAAAGA TTTTGTGCTTTATCT TERM 861 660829 - 660862 + g 70 -8.3 -3.37823 | overlap 660828 CTAAGATACCTTTTC CTTTCAACAATTGGT TAAC ACTGCTTGTTGAAAG ATTTTGTGCTTTATC TERM 862 662188 - 662205 + g 74 -4.9 -4.88293 | overlap 662189 CACCATAAACGTATG TTGAAGT ACCG ACTTCAG TTTGTTTTTGAGCTT TERM 863 662640 - 662659 + g 90 -8.6 -4.63107 | GTTGTTGTGCTAGAT GTAGTACC CCAA GGTGCTAC TTTTCCTTGTTTAAT TERM 864 664513 - 664553 + r 75 -7.1 -4.17958 | opp_overlap 664518 664524, overlap 664518 664524 TTTATGTTGATTTTC CAAAAGAAAAAGGACTT ATAATCA AAGTCCTTTTTCTTGTA TTTGTTGAAAATGTT TERM 865 664548 - 664518 - R 100 -11.4 -4.09685 | opp_overlap 664513 664518 664524, overlap 664524 GTTGATTTTCCAAAA GAAAAAGGACTT ATAATCA AAGTCCTTTTTC TTGTATTTGTTGAAA TERM 866 664518 - 664548 + r 100 -11.4 -3.96841 | opp_overlap 664518 664524, overlap 664513 664524 GTTGATTTTCCAAAA GAAAAAGGACTT ATAATCA AAGTCCTTTTTC TTGTATTTGTTGAAA TERM 867 664524 - 664542 + r 77 -4.6 -5.33331 | opp_overlap 664518 664524, overlap 664518 664513 TTTCCAAAAGAAAAA GGACTT ATAATCA AAGTCC TTTTTCTTGTATTTG TERM 868 664542 - 664524 - R 81 -4.6 -5.45802 | opp_overlap 664524 664518 664513, overlap 664518 TTTCCAAAAGAAAAA GGACTT ATAATCA AAGTCC TTTTTCTTGTATTTG Sca_0661 664989 - 664567 - | putative acetyltransferase (GNAT) family protein TERM 869 665050 - 665087 + r 100 -13 -2.92714 | opp_overlap 665050, overlap 665047 665046 AAGGATACAAAAAAA TCGCTGTAAATGCA CTCGATTTGT TGCATTTACAGCGA TAAATTTTTATTGAG TERM 870 665087 - 665050 - R 100 -13 -5.75478 | opp_overlap 665050 665047 665046 AAGGATACAAAAAAA TCGCTGTAAATGCA CTCGATTTGT TGCATTTACAGCGA TAAATTTTTATTGAG Sca_0662 665568 - 665095 - | hypothetical protein Sca_0663 666897 - 665587 - | putative membrane anchored protein with LytR_cpsA_psr domain TERM 871 668570 - 668558 - g 73 -3.4 -5.1485 | CAATTAACAGAAAAA GGAA TGAAT TTCC AAGATTTGTTAACTG TERM 872 668805 - 668817 + G 89 -6.3 -5.26119 | opp_overlap 668805 668804 CGGTTCTACCGAAAG CGAAT CTG ATTCG TTTTATTTTTGAAGA Sca_0664 667298 - 668950 + | putative phosphomannomutase Sca_0665 669014 - 670177 + | similar to autolysis and methicillin resistant-related protein fmt TERM 873 670177 - 670155 - f 100 -9.2 -6.11243 | opp_overlap 670155 AGCCAATAAAAAAAA TCAATCGACA AAA TGTCGGTTGA TTTTTTGTTTGAATC TERM 874 670155 - 670177 + F 100 -11.4 -5.65927 | opp_overlap 670155 AGCCAATAAAAAAAA TCAATCGACA AAA TGTCGGTTGA TTTTTTGTTTGAATC Sca_0666 670328 - 670942 + | hypothetical protein TERM 875 670984 - 670961 - f 83 -9.6 -3.64487 | opp_overlap 670961 TTATAGTTTGAACAA CTGCTTAGGA GAAA TCCTAGGCAG TTTTTTTATGGAAAG TERM 876 670961 - 670984 + F 100 -11.8 -5.60993 | opp_overlap 670961 TTATAGTTTGAACAA CTGCTTAGGA GAAA TCCTAGGCAG TTTTTTTATGGAAAG lacF 671245 - 671577 + | putative lactose-specific enzyme IIA lacE 671590 - 673290 + | putative PTS system lactose-specific component IIBC lacG 673374 - 674831 + | putative 6-phospho-beta-galactosidase TERM 877 674842 - 674868 + T 100 -16 -4.1822 | opp_overlap 674834 674832 674846, overlap 674846 AATAATATTAATGTT TAAAGCCTTGGC ACT GCCGAGGCTTTA TTTGTTAACATCCAG TERM 878 674846 - 674864 + T 100 -12.4 -4.68209 | opp_overlap 674834 674832 674846, overlap 674842 ATATTAATGTTTAAA GCCTTGGC ACT GCCGAGGC TTTATTTGTTAACAT TERM 879 674864 - 674846 - T 85 -10.2 -3.62032 | opp_overlap 674846 674842, overlap 674834 674832 ATATTAATGTTTAAA GCCTTGGC ACT GCCGAGGC TTTATTTGTTAACAT arsC 675274 - 674873 - | arsenate reductase arsB 676579 - 675290 - | arsenic efflux pump protein TERM 880 675651 - 675626 - G 73 -7.1 -4.10161 | opp_overlap 675626 675631, overlap 675630 GATTACGCTTGAAAA TAAACCAAATT GCGA AATTTGATTTA TGATCTCTGATAGTA TERM 881 676664 - 676690 + r 81 -9.5 -3.64703 | opp_overlap 676664 GTATATATGAAAAAA CCACCAACCAT TTAGT ATGATTGGTGG TTTAAGTCAAAAAAA TERM 882 676690 - 676664 - R 100 -11.7 -5.24989 | opp_overlap 676664 GTATATATGAAAAAA CCACCAACCAT TTAGT ATGATTGGTGG TTTAAGTCAAAAAAA lacD 677652 - 676717 - | tagatose 1,6-diphosphate aldolase TERM 883 677379 - 677402 + g 100 -8.2 -5.14563 | opp_overlap 677378, overlap 677367 AGTCAGGAAGACGAC CTGGTTCTGA TGAA TCATAACCAG TTTTTTCATAAGCAA lacC 678596 - 677649 - | putative tagatose-6-phosphate kinase lacB 679111 - 678596 - | putative galactose-6-phosphate isomerase LacB subunit lacA 679561 - 679130 - | putative galactose-6-phosphate isomerase LacA subunit TERM 884 679500 - 679516 + g 78 -6.7 -4.59414 | opp_overlap 679499 679502, overlap 679507 TCTGCATCAGCTAAT GATTTTA GAA TAAAATC TTTTAATTCTTGTGA TERM 885 679717 - 679735 + r 84 -8.9 -4.29304 | opp_overlap 679717 TTAGACATAAAAAAA CGCACAT CTGAA ATGTGCG TTTATGTTCTAATAG TERM 886 679735 - 679717 - R 100 -9.6 -5.76633 | opp_overlap 679717 TTAGACATAAAAAAA CGCACATC TGA AATGTGCG TTTATGTTCTAATAG lacR 680505 - 679753 - | putative lactose phosphotransferase system repressor lacR Sca_0677 681494 - 680586 - | putative nucleoside hydrolase (IUNH family) TERM 887 681564 - 681589 + r 100 -12.5 -5.03945 | opp_overlap 681564 TTCTATGTAAAAAAA GCCGGTGGGGC AAAT GCCTCACCAGC TTTTTGTGCTTCTTG TERM 888 681589 - 681564 - R 100 -12.5 -5.47218 | opp_overlap 681564 TTCTATGTAAAAAAA GCCGGTGGGGC AAAT GCCTCACCAGC TTTTTGTGCTTCTTG qoxD 681912 - 681622 - | putative quinol oxidase polypeptide IV qoxC 682511 - 681909 - | putative quinol oxidase polypeptide III qoxB 684486 - 682504 - | quinol oxidase polypeptide I QoxB qoxA 685598 - 684486 - | putative quinol oxidase polypeptide II QoxA TERM 889 685737 - 685703 - R 81 -4.9 -5.42198 | TTTGAAAAAATAAAA GAAAGCCCAATAGAC ACTAG GACTGACGGGCTTTC ACAGATTTGTTAAAA Sca_0682 686215 - 685898 - | putative secreted protein Sca_0683 686604 - 687752 + | putative flavohemoprotein TERM 890 687779 - 687827 + F 100 -19.4 -3.70019 | gap 1, opp_overlap 687766 687783 687788, overlap 687783 687788 AATAAAAATCATTCT TAAATAAAAGCAGACAAGTCCTG GTTA TAGG-CTTGTCTGCTTTTATTTA TATTTTAAAATTGCT TERM 891 687823 - 687783 - f 100 -15.1 -3.60431 | gap 1, opp_overlap 687779 687783 687788, overlap 687788 AAAATCATTCTTAAA TAAAAGCAGACAAGTCCT GGTTAT AGG-CTTGTCTGCTTTTA TTTATATTTTAAAAT TERM 892 687783 - 687823 + F 100 -15.8 -4.45771 | gap 1, opp_overlap 687783 687788, overlap 687779 687788 AAAATCATTCTTAAA TAAAAGCAGACAAGTCCTG GTTA TAGG-CTTGTCTGCTTTTA TTTATATTTTAAAAT TERM 893 687818 - 687788 - f 100 -10.6 -4.87803 | gap 1, opp_overlap 687783 687779 687788, overlap 687783 CATTCTTAAATAAAA GCAGACAAGTCCT GGTTAT AGG-CTTGTCTGC TTTTATTTATATTTT TERM 894 687788 - 687818 + F 100 -11.3 -5.15682 | gap 1, opp_overlap 687788 687783, overlap 687783 687779 CATTCTTAAATAAAA GCAGACAAGTCCTG GTTA TAGG-CTTGTCTGC TTTTATTTATATTTT Sca_0684 687874 - 688950 + | putative peptidase TERM 895 688996 - 688965 - T 100 -14.6 -4.20042 | opp_overlap 688965 ATCAATAGTTTAAAA GAGAGATGCCTACA TTTT TGTAAGCACCTCTC TTTTTGTTTCAATTT TERM 896 688965 - 688996 + T 100 -10.2 -5.34381 | opp_overlap 688965 ATCAATAGTTTAAAA GAGAGATGCCTACA TTTT TGTAAGCACCTCTC TTTTTGTTTCAATTT folD 689931 - 689074 - | putative bifunctional protein FolD TERM 897 689996 - 690013 + H 85 -7.1 -4.86731 | opp_overlap 689982 689981 689995 689996, overlap 689981 TGTAAATTAACGAAT TTACGTA TAAT TACGTAA TTTTCTTTAAAAAAA TERM 898 690032 - 690043 + H 70 -4.4 -4.8622 | TCTTTAAAAAAACTG TCGA AAGT TCGA TTTTTGATTGAAAAA purE 690146 - 690622 + | phosphoribosylaminoimidazole carboxylase catalytic subunit TERM 899 691145 - 691126 - g 72 -3.6 -4.93547 | opp_overlap 691126 TGAATGAAGCAAAAA CTCTTG TCGAAAAC CAAGAG TGTGTAGCTGAACAA purK 690609 - 691736 + | putative phosphoribosylaminoimidazole carboxylase ATPase subunit purC 691736 - 692440 + | putative phosphoribosylaminoimidazole-succinocarboxamide synthetase purS 692440 - 692706 + | putative phosphoribosylformylglycinamidine synthase, PurS component purQ 692706 - 693377 + | phosphoribosylformylglycinamidine synthase I PurQ purL 693370 - 695559 + | putative phosphoribosylformylglycinamidine synthetase II PurL purF 695538 - 696959 + | putative amidophosphoribosyltransferase PurF purM 696964 - 698001 + | phosphoribosylformylglycinamidine cyclo-ligase PurM purN 697998 - 698564 + | putative phosphoribosylglycinamide formyltransferase PurN TERM 900 699166 - 699154 - g 74 -4.9 -4.86731 | CTTCTTTAAAGAAAA TAAAG AAC CTTTA CGTTATGGTGAAAAT purH 698582 - 700060 + | phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase purH TERM 901 700534 - 700520 - g 70 -3.4 -5.00616 | opp_overlap 700505, overlap 700522 GTTGTCTTGAAAAAA GACGGC TTA GCTGCC GGTAAAGGTGTTATT purD 700085 - 701332 + | putative phosphoribosylamine--glycine ligase PurD TERM 902 701340 - 701363 + T 100 -10.4 -5.4505 | opp_overlap 701340 701330 AAGCATAAATAAAAA TGAGATGCCT TTTA AGGTATCTCA TTTTTTATTAAACAG TERM 903 701363 - 701340 - T 95 -8.2 -5.4182 | opp_overlap 701340, overlap 701330 AAGCATAAATAAAAA TGAGATGCCT TTTA AGGTATCTCA TTTTTTATTAAACAG TERM 904 701420 - 701463 + T 79 -5.7 -5.05577 | gap 2 CAACAATATAGAAAA GTGCTCTATTAATTCTAAATA CAAT TGTTTAG-AT-AATAGGGCAC TTTTTCATTTAGTTT Sca_0697 701746 - 701522 - | hypothetical protein Sca_0698 702766 - 701972 - | putative cobalt transport system permease protein Sca_0699 704168 - 702759 - | putative ABC-type cobalt transport system,ATPase component TERM 905 704024 - 704041 + g 81 -7.1 -4.60487 | GAACGATTCCGCTTA GTACATT TAAT AATGTAC TTTTTCCGCATCCTG Sca_0700 704756 - 704181 - | hypothetical protein TERM 906 704815 - 704788 - H 89 -3.5 -6.14618 | gap 1 TATAAAATAAAAAAA CACACAAACTTG TCTAG CAAGCT-GCGTG AAATAGGCATCGGAA Sca_0701 705214 - 706515 + | hypothetical protein TERM 907 706524 - 706551 + F 79 -5.6 -5.1361 | gap 1 TCAGTAAAATTCAAA GCTGGGGAAC-GC TTA GTAGTTTCTCAGC TTTTTTAAACTTTCT Sca_0702 706632 - 707819 + | putative SAM methyltransferase TERM 908 707910 - 707930 + G 77 -9.8 -3.2396 | opp_overlap 707903 707904 ATTTAGAACCGGTTA CTGGCAAA TCAGC TTTGCCAG TTAATGATAGTGATT Sca_0703 707834 - 708394 + | hypothetical protein ptsH 708543 - 708809 + | phosphocarrier protein HPR TERM 909 710337 - 710363 + G 78 -8.8 -3.6715 | opp_overlap 710327 710342 710345, overlap 710345 TGAAATGGCTGGGGA CCAAACAGCAAT TCC ATTGTTGTTAGG TTTAGGATTAGATGA ptsI 708811 - 710532 + | phosphoenolpyruvate-protein phosphatase (phosphotransferase system enzyme I) TERM 910 710546 - 710587 + T 100 -14.7 -4.41548 | opp_overlap 710549, overlap 710549 AGATATTCATAAAAT AAACCGTGTATGTATGAAG TGAA TTTCATACGTACACGGTTA TTTTGTGCGCTATAA TERM 911 710584 - 710549 - T 100 -13.5 -4.7878 | opp_overlap 710546 710549 TATTCATAAAATAAA CCGTGTATGTATGAA GTGAAT TTCATACGTACACGG TTATTTTGTGCGCTA TERM 912 710549 - 710584 + T 100 -16.4 -4.32067 | opp_overlap 710549, overlap 710546 TATTCATAAAATAAA CCGTGTATGTATGAAG TGAA TTTCATACGTACACGG TTATTTTGTGCGCTA Sca_0706 711108 - 710875 - | putative glutaredoxin Sca_0707 711334 - 712689 + | putative cytochrome D ubiquinol oxidase subunit I Sca_0708 712686 - 713717 + | putative cytochrome D ubiquinol oxidase subunit II Sca_0709 713816 - 714475 + | TrkA_N, TrkA_C-family protein TERM 913 714475 - 714464 - T 71 -3 -5.26918 | AGATTTGAGAAAAAA TTAG TCCA CTAA ATATATGTATTGTAA TERM 914 714510 - 714538 + T 100 -12.5 -5.09426 | opp_overlap 714499 714510 ATAACGTAATAAAAA TCACGTCTTCCTT AAA AAGGATGGCGTGA TTTTTTGAAATTGGA TERM 915 714538 - 714510 - T 100 -10.3 -5.14645 | opp_overlap 714510, overlap 714499 ATAACGTAATAAAAA TCACGTCTTCCTT AAA AAGGATGGCGTGA TTTTTTGAAATTGGA TERM 916 714606 - 714576 - T 93 -5.5 -5.93252 | opp_overlap 714576 714575 TTTAAAAATAAAAAA CTCCATATCCA AAAAATGAA TGGATGTGGAG CTATTTTCATACATA Sca_0710 715168 - 714623 - | putative hexose phosphate isomerase Sca_0711 715802 - 715170 - | putative hexulose-6-phosphate synthase Sca_0712 716028 - 716372 + | putative transcriptional regulator TERM 917 716414 - 716370 - T 100 -25.5 -4.41047 | opp_overlap 716373 716378, overlap 716378 ATCTCTCAAGGAAAA TAAGAAAATCCCGTACTACCA AAC TGGTAGTACAGGATTTTCTTA ATATATAAATATACT TERM 918 716373 - 716411 + T 100 -20.6 -3.33261 | opp_overlap 716370 716378, overlap 716378 TCTCAAGGAAAATAA GAAAATCCCGTACTACCA AAC TGGTAGTACAGGATTTTC TTAATATATAAATAT TERM 919 716378 - 716406 + T 100 -14.7 -4.77079 | opp_overlap 716370 716378, overlap 716373 AGGAAAATAAGAAAA TCCCGTACTACCA AAC TGGTAGTACAGGA TTTTCTTAATATATA TERM 920 716406 - 716378 - T 100 -16.9 -5.10656 | opp_overlap 716378 716373, overlap 716370 AGGAAAATAAGAAAA TCCCGTACTACCA AAC TGGTAGTACAGGA TTTTCTTAATATATA Sca_0713 718380 - 716428 - | putative hydrolase of the metallo-beta-lactamase superfamily TERM 921 718239 - 718214 - G 76 -7.7 -4.11048 | gap 1, opp_overlap 718211 718214 718233, overlap 718233 ACAAGATAAGAATAA TCAGGGA-TGAC ATA GTCAATCCCTAA TAAATTGTCATCAGG Sca_0714 718595 - 718380 - | hypothetical protein Sca_0716 719052 - 719501 + | hypothetical protein TERM 922 719564 - 719543 - T 95 -6.6 -5.73339 | opp_overlap 719532 719543, overlap 719532 ATAAGCACAAAAAAA GTGCTGAC TTTAAC ATCAGCAC TTCATGAGATTACGT pdf 720173 - 719619 - | type II peptide deformylase Sca_0718 720298 - 720930 + | putative lipoprotein TERM 923 721859 - 721846 - g 79 -8.1 -4.02571 | CAAGCGACTAAAGAA GCACG CGAT CGTGC AGTAAATGGAGAAGG pdhA 721099 - 722211 + | pyruvate dehydrogenase E1 component alpha subunit TERM 924 722709 - 722719 + G 76 -6.8 -4.42062 | opp_overlap 722709 TGCAATTAAAAGTAA CGAC CCA GTCG TTTATTTAGAGCATA pdhB 722215 - 723192 + | pyruvate dehydrogenase E1 component beta subunit TERM 925 723472 - 723482 + F 72 -4 -5.05116 | opp_overlap 723466, overlap 723466 TTGAATGAATGACAC TTTG TTT CAAA TTTTGTTCTTTGTAC pdhC 723539 - 724879 + | dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex E2 pdhD 724883 - 726289 + | dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 TERM 926 726346 - 726325 - f 93 -11.5 -3.70417 | opp_overlap 726325 AGCATATTATTGAAA CCGCCGAGC ATTT GCTTGGCGG TTTTTCTTATATTTG TERM 927 726325 - 726346 + F 100 -13.7 -5.33331 | opp_overlap 726325 AGCATATTATTGAAA CCGCCGAGC ATTT GCTTGGCGG TTTTTCTTATATTTG Sca_0723 726424 - 726699 + | hypothetical protein Sca_0724 726826 - 727365 + | putative DNA binding protein potA 727377 - 728480 + | putative spermidine/putrescine import ATP-binding protein PotA potB 728464 - 729270 + | putative spermidine/putrescine transport system permease protein potB potC 729267 - 730079 + | putative spermidine/putrescine transport system permease PotC potD 730076 - 731149 + | putative spermidine/putrescine-binding protein precursor PotD Sca_0729 731180 - 732364 + | hypothetical protein TERM 928 732377 - 732420 + F 100 -12.8 -4.81249 | gap 1, opp_overlap 732376 732377 732380 TAAATAATAATTAAG TAACGGTTATGTAGACACTTT TTA AGAGTGTA-ACATAACCGTTA TTTTTAAATTTCAAC TERM 929 732420 - 732377 - f 78 -10.6 -2.78237 | gap 1, opp_overlap 732377, overlap 732376 732380 TAAATAATAATTAAG TAACGGTTATGTAGACACTTT TTA AGAGTGTA-ACATAACCGTTA TTTTTAAATTTCAAC TERM 930 732417 - 732380 - f 71 -7.9 -3.50854 | gap 1, opp_overlap 732377, overlap 732377 732376 ATAATAATTAAGTAA CGGTTATGTAGACACTTT TTA AGAGTGTA-ACATAACCG TTATTTTTAAATTTC TERM 931 733217 - 733203 - g 73 -7.2 -4.13963 | overlap 733201 733211 AGGCGGCAAAAAACA TGATGA AAG TCATCA AAAAGATGACAATCA Sca_0730 732631 - 733431 + | hypothetical protein TERM 932 733441 - 733472 + T 100 -10.3 -5.09426 | opp_overlap 733441 AATTAGACAAAAAAA TAATCCTCGACTC TTAAAT GAATCGAGGATTA TTTTTTGAGATTAAA TERM 933 733472 - 733441 - T 100 -12.5 -5.75478 | opp_overlap 733441 AATTAGACAAAAAAA TAATCCTCGACTC TTAAAT GAATCGAGGATTA TTTTTTGAGATTAAA Sca_0731 734826 - 733483 - | putative divalent cation transport protein TERM 934 734989 - 734957 - R 81 -2.7 -5.72254 | overlap 734960 TCAAACAATAAAAAA GCACCTCATCTGT TGTTCAT ACAGAAAAGGCAC TAAAATAATCCTGAG Sca_0732 735643 - 735032 - | hypothetical protein TERM 935 735598 - 735614 + g 76 -2.3 -5.47218 | CTTCTAAGCCTGGCA CTTCAAA GAC TTTAAAG TTTTTTTGAGTAAAA Sca_0733 735805 - 736626 + | putative inositol monophosphatase TERM 936 736680 - 736653 - T 91 -11.4 -3.18912 | opp_overlap 736658, overlap 736658 CCATGTATGCATTAA GCAAATGAGCAA TAAT CTGCTCATCTGC TGCATGGCATGAACC Sca_0734 736981 - 736790 - | hypothetical protein TERM 937 737467 - 737444 - g 75 -5.4 -4.77567 | AGCGTTAGAACAAAA TTTAAAACCA GTTG TGGTTGTAAA TAAAATCGATAAACC typA 737076 - 738923 + | putative GTP-binding protein family protein TypA TERM 938 738937 - 738976 + T 100 -13.7 -5.64421 | opp_overlap 738937 AATGAATTGAAAGAA GCTGTACAGCAGACCTT TTTGAT AGGGTTAGCTGTACAGC TTTTTTATTTAGAAT TERM 939 738976 - 738937 - T 86 -9.3 -4.02653 | opp_overlap 738937 AATGAATTGAAAGAA GCTGTACAGCAGACCTT TTTGAT AGGGTTAGCTGTACAGC TTTTTTATTTAGAAT TERM 940 739019 - 739051 + T 80 -6.3 -4.91084 | opp_overlap 739019, overlap 739014 ACTCAACTCAAAAAA GAAATACCAGAAACT CAA AGTCTCCGGCATTTC TTTTATTCTTCAATA TERM 941 739051 - 739019 - T 100 -12.9 -5.16572 | opp_overlap 739019 739014 ACTCAACTCAAAAAA GAAATACCAGAAACT CAA AGTCTCCGGCATTTC TTTTATTCTTCAATA Sca_0736 739242 - 739054 - | hypothetical protein Sca_0737 739726 - 739244 - | hypothetical protein TERM 942 739928 - 739914 - g 78 -6.4 -4.58308 | GACCAATTAAATAAA GATGCA GAC CGCATC CTACAATTGATTAAA Sca_0738 739863 - 740138 + | hypothetical protein TERM 943 740175 - 740215 + F 85 -4.8 -5.61881 | gap 1, opp_overlap 740175 GTTTAAGACATATCA TCGGCTGTACATCCATCAT TTTT GTGATTGGA-TACAGCCGA TTTTTCTTTTTGAAC TERM 944 740540 - 740558 + G 71 -8.8 -3.1733 | overlap 740538 740538 TACCTTAACAGGCGG CGTACCAG TTT CAGGTACG TACTTTTATACGCGC Sca_0739 740382 - 741602 + | putative cell division protein TERM 945 741649 - 741610 - f 95 -11.8 -3.69092 | gap 1, opp_overlap 741610 AATATTAAGTTCAAA CAGAGATTAAAGACGT-AT TCC ATAACGTGTTTAATCTCTG TTTTTTGTTTTAAAT TERM 946 741610 - 741649 + F 100 -11.8 -5.80951 | gap 1, opp_overlap 741610 AATATTAAGTTCAAA CAGAGATTAAAGACGT-AT TCC ATAACGTGTTTAATCTCTG TTTTTTGTTTTAAAT TERM 947 743509 - 743487 - g 73 -5.6 -4.58395 | CCTAGTGTCGAAAAA CGTTCTAAAC CAG ATTTTGAACG TCCGCATATTGCACA TERM 948 743816 - 743804 - g 70 -2.7 -5.07652 | TTTCTTAAAAGAAAA TCCTT GGG AAAGA TTGGAAAAGTTACGC pyc 742029 - 745478 + | pyruvate carboxylase TERM 949 745568 - 745601 + T 100 -21.3 -3.55487 | opp_overlap 745568, overlap 745548 TTTTTGATAAAAAAA TCCGTTGGTCAACTT TCCT AAGTTGACCAACGGA TTATACTTAATATGC TERM 950 745601 - 745568 - T 100 -21.3 -5.60993 | opp_overlap 745548 745568 TTTTTGATAAAAAAA TCCGTTGGTCAACTT TCCT AAGTTGACCAACGGA TTATACTTAATATGC ctaA 746534 - 745608 - | putative heme A synthase CtaA ctaB 746807 - 747718 + | putative protoheme IX farnesyltransferase CtaB Sca_0743 747744 - 748205 + | hypothetical protein TERM 951 748217 - 748245 + F 95 -7.5 -5.70761 | overlap 748218 TTAATAGCGCGGTAA TCGACTGATGACA AAA TGTTGTTAGTCGG TTTTTCTTTTATTTT TERM 952 748218 - 748244 + F 82 -8.8 -3.96966 | overlap 748217 TAATAGCGCGGTAAT CGACTGATGACA AAA TGTTGTTAGTCG GTTTTTCTTTTATTT Sca_0744 748340 - 749380 + | hypothetical protein Sca_0745 749401 - 749841 + | similar to regulatory protein ylbF (competence development/sporulation) TERM 953 749851 - 749887 + T 100 -13.3 -5.54894 | opp_overlap 749850 749851 749853 GCATAACAATAACAC CATCCAAGTTGAAAGAT AAT ATCTTTTGATTTGGATG TTTTTTTAATGGCTT TERM 954 749939 - 749917 - T 100 -12.8 -5.59962 | opp_overlap 749921 TAAAAGAAATAAAAA GCAAGCCTCA GAA TGAGACTTGC TGGATAAACTATTAT Sca_0746 750877 - 749951 - | putative glycerophosphoryl diester phosphodiesterase TERM 955 750853 - 750867 + g 76 -5.8 -4.65838 | CCGCTGCACTGTTTC TAAGTA ATC TACTTA TTTTTACCATATATA Sca_0747 751012 - 751266 + | hypothetical protein Sca_0748 751708 - 751349 - | hypothetical protein TERM 956 751572 - 751582 + g 76 -2.4 -5.47218 | opp_overlap 751567 ATAATAATAGCTGCA GAGC TGA GCCC TTTTTTTGAATCAGG TERM 957 752075 - 752057 - g 70 -3.1 -5.04175 | opp_overlap 752060 TGAAGTATACAAAAA TAATGCG GATCG CGCTTTA AAGGCATTAGCTAAA Sca_0749 751770 - 752321 + | hypothetical protein coaD 752314 - 752799 + | putative phosphopantetheine adenylyltransferase TERM 958 752850 - 752801 - T 100 -12.4 -3.90856 | opp_overlap 752806, overlap 752806 AATTCGGTAAGTAAA TAAAACTCGTTTCAAAGCAATC ATTGTG GGTGGCTTTGAAACGAGTTTTT TATTGTGAGAAAAAG TERM 959 752845 - 752806 - T 100 -12.3 -4.99947 | opp_overlap 752806, overlap 752801 GGTAAGTAAATAAAA CTCGTTTCAAAGCAATC ATTGTG GGTGGCTTTGAAACGAG TTTTTTATTGTGAGA TERM 960 752806 - 752845 + T 100 -14.5 -5.55769 | opp_overlap 752801 752806 GGTAAGTAAATAAAA CTCGTTTCAAAGCAATC ATTGTG GGTGGCTTTGAAACGAG TTTTTTATTGTGAGA Sca_0751 753897 - 752947 - | putative ornithine cyclodeaminase Sca_0752 755062 - 753914 - | putative nucleotidyltransferase TERM 961 755135 - 755109 - H 80 -6.7 -4.7373 | opp_overlap 755114, overlap 755116 TTATTGTATCAAAAA GTCAAGATGTT AAGAA AAAATCTTGAC AACTTTACGCTAGAA Sca_0753 755190 - 755723 + | hypothetical protein rpmF 755824 - 755997 + | 50S ribosomal protein L32 TERM 962 756010 - 756037 + F 93 -5.6 -5.89827 | opp_overlap 756010 TAATTAATTTTTAAA GACCAATTGC TTAAATGC GCAATAGGTC TTTTTTTTAATACTT Sca_0755 756174 - 756920 + | SpoU rRNA Methylase family protein TERM 963 757160 - 757189 + F 93 -5.7 -5.88565 | opp_overlap 757160 GGTGGTACCACGGAA GACTTCGTCCC ATATATTC GGGGAGAAGTC TTTTTTTATTGTAAA TERM 964 757423 - 757413 - g 86 -6.8 -5.24551 | TCAAATGAAGAAAAA CCGA AAT TCGG TCAAGCTGTCAATGA TERM 965 757976 - 757962 - g 100 -8.6 -5.02074 | opp_overlap 757974 TTAGTCGCTAAAAAA CTCTTC GGT GAAGAG CGTGAAATACGTTTA pheS 757245 - 758303 + | Phenylalanyl-tRNA synthetase alpha chain TERM 966 759820 - 759810 - g 80 -6.8 -4.86621 | ACCGTCAATCAAAAA CACG TAT CGTG AAAAACACGATTGAA pheT 758303 - 760708 + | putative phenylalanyl-tRNA synthetase beta chain TERM 967 760721 - 760767 + T 72 -4.5 -5.00642 | gap 2, opp_overlap 760721 TAATAAAAATATAAA GCCGTTTCCCAAAGTTGAATGTT GGA ATCAT-CAACAG-GGGAAGCGGC TTTTTCTATGAATTA rnhC 761724 - 760780 - | putative ribonuclease HIII TERM 968 761431 - 761445 + g 76 -7.8 -4.1552 | TCCAGCCTCATCACT GCCGAT ACA GTCGGC TTTGTTGAAAGGGTA Sca_0759 762029 - 762295 + | hypothetical protein Sca_0760 762305 - 762826 + | putative membrane protein with Colicin_V domain Sca_0761 762933 - 764657 + | DNA polymerase family X protein TERM 969 764716 - 764687 - g 78 -10.3 -3.04575 | gap 1 ACAGAAAACATTAGA TGTGC-TTGATTTT GAT AAAATCAAAGCACA AGTTGAAAATGAAGC TERM 970 764864 - 764885 + G 85 -11.7 -3.41961 | ATTACCAAGCTTGAG CGGTTTAAC AGAA GTTAAACCG TTAATTCATCGTGCT TERM 971 766586 - 766572 - g 70 -2.8 -5.18355 | overlap 766574 GTTAAAAAGCAAAAA TGGGAT GAA ATCCAA GCAGGCGATGAAGTT mutS2 764667 - 767015 + | MutS2-like protein trxA 767149 - 767463 + | putative thioredoxin TrxA TERM 972 767548 - 767573 + F 93 -5.5 -5.66684 | gap 1, overlap 767540 GGTTAGTCAAGAAGG CTGGATTCACTT TTG AGGTGG-TCCAG TTTTTTTGTGCGTTG TERM 973 768431 - 768414 - g 76 -4.9 -4.90013 | gap 1 TAATTTAACTAAAAA GCAGAACA TTA TGT-CTGC AGATAATACAGCGCG uvrC 767704 - 769491 + | putative excinuclease ABC subunit C TERM 974 769619 - 769594 - f 85 -5.5 -5.42265 | gap 1, overlap 769596 GCAAATTAGAAAAAA GTGCAATGAGAA TAA TTCTCAT-GCCC AAAAACCCACAAAAA sdhC 769971 - 770585 + | succinate dehydrogenase cytochrome b-558 sdhA 770641 - 772431 + | succinate dehydrogenase flavoprotein subunit sdhB 772431 - 773255 + | succinate dehydrogenase iron-sulfur protein subunit TERM 975 773271 - 773299 + F 85 -8.2 -4.41348 | opp_overlap 773276, overlap 773276 TTATAAATATTTTGA GGAGACGGAGCA TAGTT TGTTCCGTTTTC TTTATTTAAGAGACG TERM 976 773276 - 773294 + F 84 -6.7 -5.18866 | opp_overlap 773276, overlap 773271 AATATTTTGAGGAGA CGGAGCA TAGTT TGTTCCG TTTTCTTTATTTAAG TERM 977 773311 - 773346 + F 78 -6.4 -4.70659 | opp_overlap 773311 773313 TTTCTTTATTTAAGA GACGATTTTCAA CCTTCAATCTTA TTGAAAATCGTC TTTTTGCATATAAAG Sca_0768 773443 - 774090 + | hypothetical protein Sca_0769 774106 - 774495 + | putative regulatory protein TERM 978 774546 - 774585 + F 73 -5.9 -4.56791 | gap 2 TGACTCATTTTCAAA GTGCGGGATAGCTAGACCA ATTA TGGT--AGTTATCTCGCGC TTTATGTTTTTAAAT murI 774698 - 775498 + | putative glutamate racemase Sca_0771 775514 - 776098 + | HAM1 family protein Sca_0772 776095 - 776409 + | truncated putative phosphoesterase (fragment 1) Sca_0773 776449 - 776604 + | truncated putative phosphoesterase (fragment 2) TERM 979 776612 - 776654 + T 95 -7.3 -5.68489 | gap 1, opp_overlap 776612 AAATATAAGAATAAA GCCAGAGTATATCAAC ACCTATGTAAAA GT-GATATACTCTGGC TTTTTTATTGTTGTG TERM 980 776654 - 776612 - T 100 -10.1 -4.58859 | gap 1, opp_overlap 776612 AAATATAAGAATAAA GCCAGAGTATATCAACACCT ATGT AAAAGT-GATATACTCTGGC TTTTTTATTGTTGTG Sca_0774 776838 - 776659 - | hypothetical protein glx 777374 - 776997 - | putative glyoxalase TERM 981 777067 - 777053 - G 70 -5.6 -4.44277 | CAGCAAAATTGAAAA CTCTGC CTT GCGGAG ATTCAACAAGTTCGC Sca_0776 777485 - 777937 + | Glyoxalase family protein Sca_0777 778108 - 778554 + | putative acetyltransferase Sca_0778 779034 - 778651 - | hypothetical protein Sca_0779 779690 - 779163 - | hypothetical protein Sca_0780 779875 - 780447 + | putative lipoprotein TERM 982 780463 - 780483 + F 90 -6.9 -5.64274 | overlap 780460 TCATTTGGTTTTTAA GATCCTTAT AGT ATGAGGGTC TTTTTTTATCAATAA Sca_0781 781035 - 781535 + | hypothetical protein Sca_0782 781552 - 782025 + | putative lipoprotein Sca_0783 782073 - 783014 + | hypothetical protein TERM 983 783068 - 783092 + F 100 -8 -5.95539 | opp_overlap 783068 AAAAATTATAGGTAA CCACTATTTT TAGAC AAAGTAGTGG TTTTTTTATTTAACA TERM 984 783245 - 783221 - f 91 -5 -5.98675 | TATAAAAATAAAAAA GCCCATAACC ACAAG GGTTACAGAC TCAAATAAACGTCCT TERM 985 783490 - 783471 - f 74 -8.6 -3.26184 | overlap 783469 GATCAAAATTTAAGA CACCTAGG CATG CCTAAGTG TAAAAACTTGAATTA Sca_0784 783665 - 783799 + | phenol soluble modulin Sca_0785 783855 - 783992 + | phenol soluble modulin TERM 986 784002 - 784034 + T 100 -15.1 -6.08342 | opp_overlap 784002 TTCTAATTCAAAAAA TCACTCCTGAAGT ATTCTCA ACTTCAGGAGTGA TTTTTTTATTTCTTC TERM 987 784034 - 784002 - T 100 -15.1 -5.15969 | opp_overlap 784002 TTCTAATTCAAAAAA TCACTCCTGAAGT ATTCTCA ACTTCAGGAGTGA TTTTTTTATTTCTTC Sca_0786 784777 - 784040 - | hypothetical protein TERM 988 785116 - 785097 - R 100 -9.2 -6.09196 | opp_overlap 785097 GCGAAAATAAAAAAA CGGCACGC AATT GCGCACCG TTCACTTAAATATTT Sca_0787 785314 - 785132 - | hypothetical protein Sca_0788 785520 - 786200 + | putative haloacid dehalogenase-like hydrolase TERM 989 786231 - 786205 - T 100 -11 -5.31877 | opp_overlap 786205 ATTTACTATAAAAAA TGACAAGCGA GAAATAT TCGCTTGTCA TTTTAATAACGTGTC TERM 990 786205 - 786231 + T 100 -11.7 -4.27617 | opp_overlap 786205 ATTTACTATAAAAAA TGACAAGCGAG AAATA TTCGCTTGTCA TTTTAATAACGTGTC Sca_0789 786699 - 786250 - | putative (GNAT) family acetyltransferase TERM 991 786333 - 786311 - G 87 -11.4 -3.59979 | TTGTTTGAGTGTAAA TCTGTGAAGC CAT GCTTCACAAA GAAATCTCTAGACTT TERM 992 787385 - 787375 - g 75 -5.4 -4.84918 | opp_overlap 787375 CTGATAAAGACAAAA TGCT TGA AGCA TTAGATGATTTCTTA Sca_0790 786849 - 788462 + | hypothetical protein TERM 993 788477 - 788506 + F 100 -10 -5.52384 | GAGTTATAAGGCTCA GGCCCGTTTTCC CGGTAA GGGAAGCGGGTC TTTTTTTCGTGAAAA mraZ 788606 - 789037 + | hypothetical protein mraW 789052 - 789987 + | putative MraW methylase family S-adenosyl-methyltransferase Sca_0793 790007 - 790411 + | putative cell division protein pbpA 790392 - 792545 + | penicillin-binding protein Pbp1 TERM 994 792602 - 792561 - f 82 -11.1 -2.85668 | gap 1, opp_overlap 792569, overlap 792575 TAGTTTGATACTAGA GCAGG-AGAGATAGATACCA TTA TGGTATGTATCTTTGCCTGC TATACATAAGAAAAA TERM 995 792569 - 792593 + F 77 -8.7 -3.70149 | opp_overlap 792561 792575 TACTAGAGCAGGAGA GATAGATACCA TTA TGGTATGTATC TTTGCCTGCTATACA mraY 792644 - 793609 + | phospho-N-acetylmuramoyl-pentapeptide-transferas e murD 793613 - 794962 + | putative UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 996 795038 - 795025 - g 78 -3.7 -5.28942 | TATCTGAAAGAAAAA CGGCG CAAG CGTCG CGAAAGACAACGGCG div1b 794977 - 795897 + | putative cell division protein ftsA 795999 - 797411 + | putative cell division protein FtsA ftsZ 797441 - 798613 + | cell division protein FtsZ TERM 997 798745 - 798706 - f 75 -7.4 -4.03888 | opp_overlap 798712, overlap 798711 798712 TAGTGAGAACAATAA CAAAAGTGTCATCAGA TTGAATGG TCTGATGACATTTTTA TATTTATAGTTATTT TERM 998 798740 - 798711 - f 76 -5.1 -5.01823 | opp_overlap 798712, overlap 798706 798712 AGAACAATAACAAAA GTGTCATCAGA TTGAATGG TCTGATGACAT TTTTATATTTATAGT TERM 999 798712 - 798739 + F 100 -10 -5.24799 | opp_overlap 798711 798706 798712 GAACAATAACAAAAG TGTCATCAGATT GAAT GGTCTGATGACA TTTTTATATTTATAG TERM 1000 798739 - 798712 - f 77 -8.6 -3.58654 | opp_overlap 798712, overlap 798711 798706 GAACAATAACAAAAG TGTCATCAGA TTGAATGG TCTGATGACA TTTTTATATTTATAG Sca_0800 798843 - 799637 + | conserved hypothetical protein with nucleic acid binding motif TERM 1001 799984 - 799974 - g 76 -6.8 -4.46742 | overlap 799966 AAAGAAATTAATAAA CGTG CGA CACG TCCAGTTAATTGTTT Sca_0801 799650 - 800324 + | Predicted enzyme with a TIM-barrel fold Sca_0802 800321 - 800950 + | conserved hypothetical protein (similar to ylmF) Sca_0803 800963 - 801259 + | hypothetical protein Sca_0804 801495 - 802106 + | putative RNA-binding protein TERM 1002 802387 - 802377 - g 73 -6.8 -4.21744 | overlap 802356 802372 802378 AGCCAAGAAACTAAA GCTG CTG CAGC TAAAGAAGCAGAAGC Sca_0805 802131 - 802748 + | hypothetical protein TERM 1003 802974 - 802986 + F 95 -6.3 -5.69068 | overlap 802924 TCGCCCCTGTTAATT GAACT TAG AGTTC TTTTTTATATTTTTA TERM 1004 803569 - 803558 - g 83 -5.8 -5.24449 | TATAAAGGTAAAAAA CCAG TTTA CTGG TCACCATCAAGTGAA ileS 803015 - 805762 + | putative isoleucyl-tRNA synthetase TERM 1005 805789 - 805824 + F 100 -9.8 -5.93252 | opp_overlap 805792 805795 TTAAAAACTTTTTAA GAAGAACAACTTGGAG TAAC TTCCATGCTGTTCTTC TTTTTTATTTTTGGC Sca_0807 805978 - 806430 + | truncated glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein (fragment 1) Sca_0808 806352 - 806771 + | truncated glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein (fragment 2) Sca_0809 806780 - 807268 + | similar to secretory antigen precursor SsaA lsp 807375 - 807854 + | lipoprotein signal peptidase (signal peptidase II) rluD 807870 - 808787 + | putative ribosomal large subunit pseudouridine synthase D TERM 1006 808832 - 808791 - f 100 -8.9 -5.02439 | opp_overlap 808794, overlap 808794 808830 AGAGAAGCATAAAAA TAATCCCTTGAATTCAG TTTGAGTG CTGGATTCAAGGGATTT TTACATAAAAAAAGA TERM 1007 808829 - 808794 - f 100 -10.6 -4.58563 | opp_overlap 808794, overlap 808791 GAAGCATAAAAATAA TCCCTTGAATTCAG TTTGAGTG CTGGATTCAAGGGA TTTTTACATAAAAAA TERM 1008 808794 - 808829 + F 100 -13.5 -4.65895 | opp_overlap 808794 808791 GAAGCATAAAAATAA TCCCTTGAATTCAGT TTGAGT GCTGGATTCAAGGGA TTTTTACATAAAAAA TERM 1009 808870 - 808846 - f 81 -2.7 -5.71712 | overlap 808848 808850 TTTTACATAAAAAAA GAGTCTTGCTG ACA CAGCAAGTCGA TAGCAATTAAGCTAC TERM 1010 808868 - 808848 - f 100 -9.7 -4.50122 | overlap 808846 808850 TTACATAAAAAAAGA GTCTTGCTG ACA CAGCAAGTC GATAGCAATTAAGCT TERM 1011 808866 - 808850 - f 82 -10.9 -2.55441 | overlap 808848 808846 ACATAAAAAAAGAGT CTTGCTG ACA CAGCAAG TCGATAGCAATTAAG TERM 1012 809045 - 809088 + F 100 -14.2 -5.01546 | opp_overlap 809046 809049, overlap 809046 TGAAACTTTAATTAT ACAAGCTCTTTATTTATCTT TTAA AAGATAGGTAAAGAGCTTGC TTTTTCTATACATTT TERM 1013 809046 - 809087 + F 100 -17.7 -3.59301 | opp_overlap 809046 809049, overlap 809045 GAAACTTTAATTATA CAAGCTCTTTATTTATCTT TTAA AAGATAGGTAAAGAGCTTG CTTTTTCTATACATT TERM 1014 809087 - 809046 - f 100 -13.3 -2.9296 | opp_overlap 809045 809046, overlap 809049 GAAACTTTAATTATA CAAGCTCTTTATTTATCTT TTAA AAGATAGGTAAAGAGCTTG CTTTTTCTATACATT TERM 1015 809084 - 809049 - f 81 -9.2 -3.60214 | opp_overlap 809046 809045, overlap 809046 ACTTTAATTATACAA GCTCTTTATTTATCTT TTAA AAGATAGGTAAAGAGC TTGCTTTTTCTATAC TERM 1016 809130 - 809116 - f 71 -5.8 -4.38712 | TTTATTCCTACAAAA CATAAT TTT ATTATG TAAACTTCACAAACC TERM 1017 809383 - 809412 + F 100 -15.9 -5.60993 | gap 1, opp_overlap 809378, overlap 809371 TGACAGGAATCGGAT TCCCGTGTC-TCTC AAT GAGAAGACACGGGA TTTTTTTATAGAAAG pyrR 809440 - 809967 + | putative pyrimidine operon regulatory protein / uracil phosphoribosyltransferase TERM 1018 810133 - 810162 + F 90 -6.6 -5.52384 | gap 1 ATCTCTCCCCTTAAG TCTCTTTGCCAGC TGATT GCTG-TAAAGAGA TTTTTTTCATGAAAG pyrP 810191 - 811477 + | uracil permease pyrB 811519 - 812427 + | putative aspartate transcarbamoylase pyrC 812417 - 813688 + | dihydroorotase pyrAA 813695 - 814795 + | carbamoyl-phosphate synthase, small chain TERM 1019 817818 - 817798 - g 72 -7.7 -3.66356 | ATGGCGAAGTTCAAA TTGTCATTA ATA CAATGACAA AAGGGAAAACAATCG pyrAB 814788 - 817961 + | carbamoyl-phosphate synthase, large chain TERM 1020 817967 - 818011 + F 83 -10.2 -3.51076 | gap 1, opp_overlap 817967 817970, overlap 817963 ACAAATGTAGAAAAA GCAGCTTCTAAAACCTCTTTT GATA AAAGGAGGTTGAAGAAGC-GC TTCGTTATGTAATAA TERM 1021 818011 - 817967 - f 88 -8 -4.95896 | gap 1, opp_overlap 817963 817967, overlap 817970 ACAAATGTAGAAAAA GCAGCTTCTAAAACCTCTTTT GATA AAAGGAGGTTGAAGAAGC-GC TTCGTTATGTAATAA TERM 1022 818009 - 817970 - f 78 -9.4 -3.33589 | opp_overlap 817967 817963, overlap 817967 AATGTAGAAAAAGCA GCTTCTAAAACCTCTTTT GATA AAAGGAGGTTGAAGAAGC GCTTCGTTATGTAAT TERM 1023 818184 - 818194 + G 70 -6.8 -4.14392 | opp_overlap 818184 818183 ATCCAATCAGGAAAT TGCG GAC CGCA TTTTCGAAATTAAAG pyrK 818149 - 818913 + | putative dihydroorotate dehydrogenase, electron transfer subunit pyrD 818910 - 819827 + | dihydroorotate dehydrogenase, catalytic subunit pyrF 819827 - 820531 + | putative orotidine-5-phosphate decarboxylase pyrE 820533 - 821144 + | orotate phosphoribosyltransferase Sca_0822 821167 - 821358 + | hypothetical protein TERM 1024 821373 - 821423 + F 100 -9.1 -5.05113 | AAAATTGAGGCAATG CAGTCCGTAATAAACTACTGGTT ATACG AATCGGCGGTTTATAGCGGGCTG TTTTGTTTCTCTGAA TERM 1025 821478 - 821446 - f 74 -7 -4.34482 | TCTCTGAAAAAAAGA GACGCCAATGCTTC AAAAA GAAACACAAGCGTC AATATCTGTTATCTA Sca_0823 821704 - 822105 + | hypothetical protein TERM 1026 822136 - 822178 + F 74 -2.1 -5.63504 | gap 2, opp_overlap 822133, overlap 822137 AATTTTTGAAATGAA AGCTCTTTCC--AGTGGATAC TTC GTAATCACTTTGGGAAGAGCG TTTTTTTATGCCGTT capC 822257 - 823033 + | putative tyrosine-protein phosphatase capC TERM 1027 823056 - 823110 + T 100 -14.1 -3.14792 | gap 1, opp_overlap 823044 823043 823061 823066, overlap 823066 AACTTCATAATTATA TGAAATAAAAGCAGTAGAACAGAAAT TGTA ATTTC-GTTCTACTGCTTTTATTCAA GTTATTTTACATTGA TERM 1028 823105 - 823061 - T 100 -18.4 -3.89971 | gap 1, opp_overlap 823056 823066, overlap 823066 CATAATTATATGAAA TAAAAGCAGTAGAACAGAAAT TGTA ATTTC-GTTCTACTGCTTTTA TTCAAGTTATTTTAC TERM 1029 823066 - 823100 + T 100 -13.9 -4.68705 | gap 1, opp_overlap 823061 823066, overlap 823056 TTATATGAAATAAAA GCAGTAGAACAGAAAT TGTA ATTTC-GTTCTACTGC TTTTATTCAAGTTAT TERM 1030 823100 - 823066 - T 100 -13.9 -4.97158 | gap 1, opp_overlap 823066 823056, overlap 823061 TTATATGAAATAAAA GCAGTAGAACAGAAAT TGTA ATTTC-GTTCTACTGC TTTTATTCAAGTTAT Sca_0825 824830 - 823112 - | putative fibronectin/fibrinogen binding protein gmk 825005 - 825628 + | putative guanylate kinase Sca_0827 825628 - 825858 + | putative DNA-directed RNA polymerase subunit omega TERM 1031 825901 - 825870 - T 100 -10.4 -5.00895 | opp_overlap 825870 CTGATTATATAAAAA TACCGTAAAAGT TGGCATTG ACTTTTACGGTA TTTTTATAGCATTTT TERM 1032 825870 - 825901 + T 100 -11.8 -4.90296 | opp_overlap 825870 CTGATTATATAAAAA TACCGTAAAAGTTG GCAT TGACTTTTACGGTA TTTTTATAGCATTTT Sca_0828 826219 - 825905 - | putative thioredoxin coaBC 826440 - 827651 + | putative Coenzyme A biosynthesis bifunctional protein coaBC TERM 1033 828188 - 828178 - g 70 -3.2 -5.03227 | overlap 828145 ATACGAGAAAGAAAA CGCA ACG TGCA ATTCGAATTTCATCT TERM 1034 828449 - 828438 - g 89 -5.8 -5.3798 | GAACAAGAAGAAAAA CGTC AATT GACG CCTGGCCAACAAGAA TERM 1035 828855 - 828843 - g 76 -7.7 -4.11304 | opp_overlap 828843 828842 GCAACGTATAAACAA GAGGA TTA TCCTC GTTATCATGCAAAAG priA 827652 - 830060 + | putative primosomal replication factor Y (primosomal protein N') TERM 1036 830414 - 830404 - f 71 -3.2 -5.19261 | AAAGCTATCAAAAAA GCAC AAC GTAC GTATTCTAACGAGGA Sca_0831 830440 - 831072 + | Putative NADH-flavin reductase TERM 1037 831848 - 831833 - g 85 -2.5 -5.80951 | ATCGAAAATAAAAAA TGCCA TTTAGT CGGCA GTGATGCGCACCATG capC 831269 - 831994 + | putative phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis) Sca_0833 832110 - 832427 + | hypothetical protein TERM 1038 832466 - 832508 + T 100 -10.1 -5.13137 | gap 1, opp_overlap 832466 AACATAATTTTAAAA CGCACTTG-CTAAAGTAACT GCCC AGTTACTCTATACAAGTGCG TTTTTGCTTTATTTC TERM 1039 832508 - 832466 - T 100 -14.5 -4.2361 | gap 1, opp_overlap 832466 AACATAATTTTAAAA CGCACTTGC-TAAAGTAACT GCCC AGTTACTCTATACAAGTGCG TTTTTGCTTTATTTC Sca_0834 832824 - 832528 - | hypothetical protein def 833025 - 833513 + | putative polypeptide deformylase Sca_0836 833506 - 834438 + | putative methionyl-tRNA formyltransferase Sca_0837 834438 - 835745 + | putative NusB_Sun RNA binding protein TERM 1040 835784 - 835762 - g 78 -7.8 -4.21908 | opp_overlap 835761 835765, overlap 835765 GATTACTACCCAAAA GAAGAAAAAG AAT CGTTTTCTTC CTGATTTTGATAAAC Sca_0838 835745 - 836839 + | putative Radical SAM family protein TERM 1041 837145 - 837169 + G 83 -11.5 -3.06501 | opp_overlap 837150 837151, overlap 837147 837150 TTATCGCGGTATGGG GACAACTGCTG TGG CAGCACTTGTC TTCGATAACCGTGTG TERM 1042 837269 - 837246 - g 73 -6.8 -4.254 | GCAATATTGAACAAA TCACAAATGA CCAC TCTTTTGTGA ACCATTTGGTTATGA Sca_0839 836846 - 837589 + | putative Serine/threonine phosphatase, family 2C protein TERM 1043 837757 - 837779 + G 76 -10.7 -2.59564 | opp_overlap 837773 837774, overlap 837756 ATTCGTCGATTTGAA CGTGAAGTA CATAA TACTTCACG CTTATCGCATGAAAA TERM 1044 838653 - 838641 - g 71 -4.9 -4.58685 | opp_overlap 838641 AAAGCGTTCTAAAAA GAAAA AGT TTTTC TTTGCGTTGATTTTT TERM 1045 839375 - 839365 - g 81 -5.4 -5.12068 | opp_overlap 839374 GATAGTGAAGAAAAA GAAG GCA CTTC AGCAAGTTCTGATGA TERM 1046 839612 - 839600 - g 73 -6.3 -4.46212 | GTGTTGATGATAAAA TTGTC GCA GACAA AGATGTCGGATATTA pknB 837586 - 839628 + | putative serine/threonine-protein kinase PknB TERM 1047 839635 - 839664 + F 100 -8.8 -5.626 | opp_overlap 839635 839638 GGATATTAAAAGTAA GAACTTCATTTA TTAATT TAAATGGAGTTC TTTTTTTATAACATA Sca_0841 839766 - 840641 + | hypothetical protein rpe 840641 - 841294 + | putative ribulose-5-phosphate 3-epimerase Sca_0843 841319 - 841960 + | putative thiamine pyrophosphokinase TERM 1048 841964 - 842007 + T 90 -12.1 -2.94825 | opp_overlap 841969, overlap 841969 GATAATCGATAAATA AAAAAGGATGAAACAATTT TTAGTT GAATTGTTTCATCCTTTTA ATTTGATTCAAATAA TERM 1049 841969 - 842002 + T 100 -12 -4.62054 | opp_overlap 841969, overlap 841964 TCGATAAATAAAAAA GGATGAAACAATTT TTAGTT GAATTGTTTCATCC TTTTAATTTGATTCA TERM 1050 842002 - 841969 - T 100 -11.3 -5.72622 | opp_overlap 841969 841964 TCGATAAATAAAAAA GGATGAAACAATT TTTAGTTG AATTGTTTCATCC TTTTAATTTGATTCA Sca_0844 842405 - 842043 - | hypothetical protein TERM 1051 842528 - 842583 + r 84 -8.6 -4.19678 | gap 1, opp_overlap 842530 842546, overlap 842530 842546 AATTTAATTTATAAG AATATGCACATAAAAAAACGACCCG CCACATA CGAGTCGTTTT-TTCTGTGCATATA TTTATTAAACTCTAG TERM 1052 842581 - 842530 - R 100 -16.3 -3.84808 | gap 1, opp_overlap 842528 842530 842546, overlap 842546 TTTAATTTATAAGAA TATGCACATAAAAAAACGACCCGC CACAT ACGAGTCGTTTTTTC-TGTGCATA TATTTATTAAACTCT TERM 1053 842530 - 842581 + r 93 -11.2 -3.69469 | gap 1, opp_overlap 842530 842546, overlap 842528 842546 TTTAATTTATAAGAA TATGCACATAAAAAAACGACCCG CCACATA CGAGTCGTTTT-TTCTGTGCATA TATTTATTAAACTCT TERM 1054 842546 - 842566 + r 76 -3.9 -5.38047 | opp_overlap 842530 842546, overlap 842530 842528 ATGCACATAAAAAAA CGACCCG CCACATA CGAGTCG TTTTTTCTGTGCATA TERM 1055 842566 - 842546 - R 95 -6.8 -5.72616 | opp_overlap 842546 842530 842528, overlap 842530 ATGCACATAAAAAAA CGACCCGC CACAT ACGAGTCG TTTTTTCTGTGCATA rpmB 842776 - 842588 - | 50S ribosomal protein L28 Sca_0846 843111 - 843485 + | hypothetical protein TERM 1056 844126 - 844116 - g 73 -5.4 -4.71482 | ATGAAAGGTGAAAAA GTTG AAA CAAC AGCACCTAAATTAGA TERM 1057 844650 - 844638 - g 73 -3.4 -5.08824 | TCTGGAGTTAAAAAA GCAA TTATC TTGC CGAATAACAAAAATA TERM 1058 845098 - 845112 + G 73 -7.2 -4.0056 | opp_overlap 845097 845094 845098 845100 AAATAGATGAACAAG TAGGTT CTC AACCTA TTTATCCGTATTTAT Sca_0847 843498 - 845141 + | predicted kinase related to dihydroxyacetone kinase family TERM 1059 845175 - 845205 + F 79 -5.5 -5.07275 | opp_overlap 845169 845177 845193, overlap 845169 ATATGAGAAGTAAAA TTCACTTGGGG CAAAAAACA CCCTAAGTGGA TTTTTCTGTGTGTAA sdaB 845342 - 846007 + | putative L-serine dehydratase, beta subunit sdaA 846023 - 846892 + | putative L-serine dehydratase, iron-sulfur-dependent, alpha subunit TERM 1060 847080 - 847120 + G 84 -4.6 -5.52384 | opp_overlap 847075 GAAGATCAATCCACC GTGACAGTGACCGGCGAA GTTTA TTCTACGCCCACTGTCGC TTTTTTTGGTAGAAA recG 846894 - 848951 + | putative ATP-dependent DNA helicase RecG TERM 1061 848996 - 849010 + F 78 -4.3 -5.45652 | TTAAACTATTTTTAA CACAT GTATG ATGTG TTTTTTGTTGAGCAT TERM 1062 849221 - 849207 - g 71 -7.2 -3.98745 | opp_overlap 849207 849206 TAAGTATCCAAACAA TTCGAT TAG ATCGAA CTTACTTGAAAATCC TERM 1063 849400 - 849416 + G 74 -5.1 -4.86731 | opp_overlap 849400 849402 ATTTACACGAAATGA TATTGCC CGC GGCCATA TTTTGTTTGCACAAG fapR 849095 - 849658 + | putative transcription factor FapR plsX 849660 - 850646 + | putative fatty acid/phospholipid synthesis protein PlsX fabD 850639 - 851565 + | putative malonyl CoA-acyl carrier protein transacylase fabG 851558 - 852295 + | 3-oxoacyl-(acyl-carrier protein) reductase acpP 852430 - 852663 + | acyl carrier protein TERM 1064 852702 - 852675 - f 100 -12.2 -2.9911 | gap 1, opp_overlap 852675, overlap 852672 852670 ATAATGAAAATATTA TCTGAGTCGTCTA TCT TAG-CGACTCAGA TTTTTCTTTTGTTTT TERM 1065 852675 - 852702 + F 100 -12.2 -5.70761 | gap 1, opp_overlap 852672 852670 852675 ATAATGAAAATATTA TCTGAGTCGTCTA TCT TAG-CGACTCAGA TTTTTCTTTTGTTTT rnc 852795 - 853523 + | putative ribonuclease III TERM 1066 855598 - 855584 - g 73 -10 -2.52666 | overlap 855583 855581 TCAAACTAAAAGTAT TCTCGC TCA GCGAGA TGAACTTGCACAGTT smc 853566 - 857135 + | putative chromosome segregation protein SMC TERM 1067 857258 - 857222 - g 80 -6.8 -4.89233 | gap 1, overlap 857225 857246 GACCAAGATGAAAAA CAAGATTCTGAATCCTC GAAA GAAGATTCAAAA-CCTG AACCTAAGTCTACAT TERM 1068 857256 - 857225 - g 91 -9.6 -4.53398 | overlap 857222 857246 CAAGATGAAAAACAA GATTCTGAATCCTC GAAA GAAGATTCAAAACC TGAACCTAAGTCTAC TERM 1069 857518 - 857505 - g 73 -6.7 -4.31835 | opp_overlap 857479 AAGCTTTAGAAGAAA TGCTG ATTA CAGCA GACGTAGGCTTCAAT ftsY 857132 - 858400 + | putative cell division protein FtsY Sca_0859 858387 - 858719 + | putative transcriptional regulator related to the SRP pathway ffh' 858738 - 859553 + | truncated signal recognition particle homolog (fragment 1) TERM 1070 859602 - 859577 - g 79 -4.8 -5.1101 | opp_overlap 859596 GTATGAGTGAAAAAA TGGATGGA TTAGAATTGT TCCATCCA GAACGTATGGCTTCT ffh'' 859564 - 860106 + | truncated signal recognition particle homolog (fragment 2) TERM 1071 860116 - 860136 + F 91 -5.4 -5.72622 | opp_overlap 860116 TTTTAATATTGGAAA GTCAGAGT ATGAA GCTCTGGC TTTTTTATTTATCGG Sca_0862 860401 - 860709 + | hypothetical protein rpsP 860964 - 861242 + | 30S ribosomal protein S16 TERM 1072 861290 - 861264 - f 81 -9.5 -3.68962 | opp_overlap 861264 GCTTAAGATATATAA CCCTGAGACAA TATAG TTGTTTCAGGG TTTGTTATTAGGCAT TERM 1073 861264 - 861290 + F 100 -12.4 -4.45068 | opp_overlap 861264 GCTTAAGATATATAA CCCTGAGACAAT ATA GTTGTTTCAGGG TTTGTTATTAGGCAT rimM 861375 - 861851 + | 16S rRNA processing protein trmD 861853 - 862590 + | putative tRNA (guanine-N1)-methyltransferase TERM 1074 862600 - 862588 - f 81 -6.3 -5.13343 | opp_overlap 862587 CAATTGAAAACAAAA TAGCA GTG TGCTA ATATAGTTGAAGTGT TERM 1075 862859 - 862847 - g 80 -9.1 -3.90112 | opp_overlap 862845 GGTGTTGTAATTAAA CGCCA CGG TGGCG GAATTTCAGAAACTT rplS 862694 - 863044 + | 50S ribosomal protein L19 TERM 1076 863075 - 863098 + F 100 -11 -5.95539 | opp_overlap 863072 CATGCGAGAAGATCG GGCTGTCCCA ATGA TGGGGCAGTC TTTTTTTATTTCAAA TERM 1077 865774 - 865764 - g 70 -3.2 -5.0538 | overlap 865749 865746 CTTGATGCTAAAAAA GCAC AAG ATGC CAAAGATACTGATGC TERM 1078 866710 - 866700 - g 70 -6.8 -4.0371 | GATGTTTTAGAGAAA GCAC TTA GTGC AAAAGCAGAGCAAGA TERM 1079 867106 - 867096 - g 75 -5.4 -4.7254 | overlap 867097 ATCGTTGATGAAAAA GTTG ACT CAAC AGTTGTTGATGAACC Sca_0867 863511 - 867665 + | putative cell wall-anchored protein TERM 1080 867684 - 867711 + T 100 -14.2 -4.58395 | opp_overlap 867684 AATATCTACACAAAA TAGAGCCACGTC GATT GACGAGGCTCTA TTTTTCGGGGCTACA TERM 1081 867711 - 867684 - T 100 -14.2 -4.56961 | opp_overlap 867684 AATATCTACACAAAA TAGAGCCACGTC GATT GACGAGGCTCTA TTTTTCGGGGCTACA Sca_0868 869407 - 867776 - | hypothetical protein TERM 1082 869753 - 869792 + r 100 -12.4 -4.65969 | opp_overlap 869754 869759, overlap 869744 869754 869759 TTTTATTTAGAAACA ATGAAATCGTTGGAGAAA AAAT TTTCTCCAACGATTTGAA TTTTAATTATTTATT TERM 1083 869754 - 869791 + r 100 -15.9 -3.37141 | opp_overlap 869754 869759, overlap 869753 869744 869759 TTTATTTAGAAACAA TGAAATCGTTGGAGAAA AAAT TTTCTCCAACGATTTGA ATTTTAATTATTTAT TERM 1084 869791 - 869754 - R 100 -15.9 -4.09117 | opp_overlap 869754 869753 869744 869759, overlap 869759 TTTATTTAGAAACAA TGAAATCGTTGGAGAAA AAAT TTTCTCCAACGATTTGA ATTTTAATTATTTAT TERM 1085 869786 - 869759 - R 100 -15.8 -4.18044 | opp_overlap 869754 869753 869744 869759, overlap 869754 TTAGAAACAATGAAA TCGTTGGAGAAA AAAT TTTCTCCAACGA TTTGAATTTTAATTA TERM 1086 869759 - 869786 + r 100 -15.8 -3.96452 | opp_overlap 869759 869754, overlap 869754 869753 869744 TTAGAAACAATGAAA TCGTTGGAGAAA AAAT TTTCTCCAACGA TTTGAATTTTAATTA Sca_0869 872414 - 869799 - | hypothetical protein TERM 1087 871192 - 871178 - G 74 -3.6 -5.22006 | TCATTAGAATAAAAA TAAGTA CTG TACTCA TCCACCAATGCCATT TERM 1088 871255 - 871241 - G 88 -5 -5.48514 | overlap 871249 AGGAATAAAGAAAAA TTCCAA TAG CTGGAA GACTAGCAGCCAGTA Sca_0870 872671 - 873528 + | putative ABC transporter siderophore binding protein TERM 1089 873562 - 873600 + F 100 -14.2 -5.80817 | opp_overlap 873562 873567 AAGAACGTGTTGAAA GTAAAGCTGAGGATTT CCAGAAA AAATCTTCAGCTTTAC TTTTTTTCTATTAAA TERM 1090 873600 - 873562 - f 100 -13.4 -3.56366 | opp_overlap 873562, overlap 873567 AAGAACGTGTTGAAA GTAAAGCTGAGGATTTCC AGA AAAAATCTTCAGCTTTAC TTTTTTTCTATTAAA TERM 1091 873595 - 873567 - f 75 -7.5 -4.05788 | opp_overlap 873562, overlap 873562 CGTGTTGAAAGTAAA GCTGAGGATTTCC AGA AAAAATCTTCAGC TTTACTTTTTTTCTA Sca_0871 873684 - 874091 + | putative effector domain of transcriptional regulator TERM 1092 874109 - 874134 + T 80 -6.9 -4.75776 | opp_overlap 874104 874109 AATAGAATGATAAAA GGTGTGCTT TCAATTTT GAGCACACC TTTTTAAGTTAAATT TERM 1093 874134 - 874109 - T 76 -6.2 -4.60977 | opp_overlap 874109, overlap 874104 AATAGAATGATAAAA GGTGTGCT TTCAATTTTG AGCACACC TTTTTAAGTTAAATT Sca_0872 875033 - 874143 - | putative alpha/beta hydrolase superfamily protein TERM 1094 874982 - 874968 - G 84 -7.8 -4.71186 | ATCAGGAAGATAAAA CCACGC ACT GCATGG CGTACCGTCTGAATC Sca_0873 875839 - 875087 - | putative HTH-type transcriptional regulator (DeoR family) Sca_0874 876114 - 876776 + | putative ABC transporter nucleotide-binding domain TERM 1095 877523 - 877535 + G 76 -3.3 -5.42605 | TTGTAATGCTAATAC CCGCA CTA TTCGG TTTTGTTTTTCTTGC Sca_0875 876766 - 878391 + | putative ABC transporter, permease protein Sca_0876 878388 - 879203 + | hypothetical protein, similar to ABC transporter, binding protein Sca_0877 879200 - 879400 + | hypothetical protein TERM 1096 880204 - 880194 - g 74 -8.2 -3.73534 | GAATTGGACGAAGAA GGCG GTA CGCC TGCAAGATACCAACG Sca_0878 879414 - 880508 + | putative aminotransferase, class V Sca_0879 880513 - 881298 + | putative hydrolase (HAD superfamily) Sca_0880 881429 - 882298 + | putative GTPase rnhB 882298 - 883083 + | putative RNase HII sucC 883288 - 884454 + | putative succinyl-CoA synthetase, beta chain sucD 884475 - 885389 + | putative succinyl-CoA synthetase, alpha chain TERM 1097 885373 - 885389 + F 78 -6.7 -4.67011 | opp_overlap 885372 885366 885373 AAGAATTATTAACAG TTAAGAA AGA TTCTTAA TTTTTAAATCACATT TERM 1098 885421 - 885454 + F 100 -11.9 -5.72254 | opp_overlap 885421 TTGTTCACAAATAAA GCATAGGTTTGTACT GAAA AGTGCAAATCTGTGC TTTTTTATTATTTAA TERM 1099 885454 - 885421 - f 70 -5.3 -4.55295 | opp_overlap 885421 TTGTTCACAAATAAA GCATAGGTTTGTACT GAAA AGTGCAAATCTGTGC TTTTTTATTATTTAA TERM 1100 887397 - 887387 - g 73 -5.4 -4.59773 | opp_overlap 887387 GCTGAGGGTGAAAAA GTAG TCG CTAC TGATATTGAACCTAC topA 886070 - 888139 + | DNA topoisomerase I TERM 1101 888483 - 888470 - g 86 -8.1 -4.4767 | TCATTGATTATAAAA GCAGC AGAT GCTGC ACGTGTACCAGCAGG gid 888224 - 889534 + | glucose-inhibited division protein gid TERM 1102 889974 - 890006 + G 91 -9.4 -4.43208 | gap 1 GAAAGAACAATATCT GC-CTCATTTTTTCT ATGA AGAAGAAATGAGCGC TTTATTTGAAACTGT xerC 889657 - 890547 + | putative site-specific recombinase XerC hslV 890550 - 891089 + | ATP-dependent protease HslV TERM 1103 892417 - 892440 + G 70 -6.8 -4.08216 | gap 1, opp_overlap 892406 892417 892415 AAGACACAGACAATA TCG-GTGCAAG ACG CTTGCATACGA TTTTAGAAAAAATGC hslU 891174 - 892580 + | ATP-dependent hsl protease ATP-binding subunit hslU codY 892613 - 893386 + | transcription pleiotropic repressor CodY TERM 1104 893734 - 893717 - g 79 -4.9 -5.19916 | gap 1, opp_overlap 893717 AAAACAGTGAAAAAA GTTG-ACG AAG CGTACAAC TTCCTTAAACAAGTA rpsB 893570 - 894352 + | 30S ribosomal protein S2 TERM 1105 894368 - 894395 + F 90 -7.1 -5.40072 | opp_overlap 894367 894368 GAATAATTCAAAAAG GGTGATAAGAT ATTAAA AGCTTATCACC TTTTTTTAAAAAGAA tsf 894590 - 895471 + | putative elongation factor TS TERM 1106 896062 - 896042 - g 88 -11.1 -3.68962 | TCTCAACAGATACAA CAGCTGCTC TAA GAGCTGCTG AAGTTGAAGCTGACG pyrH 895606 - 896328 + | putative uridylate kinase frr 896346 - 896900 + | putative ribosome recycling factor TERM 1107 896893 - 896883 - f 91 -5.4 -5.74684 | GAAGAAAAAGAAAAA GACA TCA TGTC AGTATAATATCTCGT TERM 1108 896944 - 896969 + F 95 -7.7 -5.39221 | opp_overlap 896944 ATATTGTGACCAAAA CTGTACCAA CTAAGACT TTGGTACAG TTTTTTAATTGTTCT TERM 1109 896969 - 896944 - f 79 -7.7 -4.26344 | opp_overlap 896944 ATATTGTGACCAAAA CTGTACCAA CTAAGACT TTGGTACAG TTTTTTAATTGTTCT TERM 1110 897417 - 897388 - g 76 -5.9 -4.59853 | TTAATTTCTTAAAAA CATTTCTTCCT GAATTAAT AGAAAGAAATG TGAAAGTAGAAACAA uppS 897081 - 897848 + | putative undecaprenyl pyrophosphatase synthetase TERM 1111 897887 - 897897 + G 70 -5.4 -4.40199 | GTTAGAACGGTAACG GCAA TTA TTGC TTTGTTAATCTTTTT cdsA 897866 - 898648 + | putative phosphatidate cytidylyltransferase TERM 1112 898658 - 898708 + F 72 -4.1 -5.03994 | gap 1, opp_overlap 898670 898671 AATTAATAATTGCGA GGCATGTGAGAATTGCAAACAAAT AGAA ATTCGTTTGCACGTCG-GCATGCC TTTTTCTGTATCAAC TERM 1113 898696 - 898671 - f 76 -9.9 -2.59881 | opp_overlap 898658, overlap 898670 GAGGCATGTGAGAAT TGCAAACAAAT AGAA ATTCGTTTGCA CGTCGGCATGCCTTT TERM 1114 900128 - 900152 + G 73 -6.5 -4.30719 | TTATCATGATATTAG TAACGTGGAAT GAT ATTCAGCGTTA TTTCTTATAAGAAAC Sca_0897 898882 - 900162 + | putative PDZ_metalloprotease family protein proS 900184 - 901884 + | putative prolyl-tRNA synthetase TERM 1115 901894 - 901922 + F 100 -13.3 -6.11229 | ATTTAAGCGAAAGTT TTCCGAAGCTCTT AAA AGGAGTTTCGGAA TTTTTTTGTTTTACT TERM 1116 902990 - 902980 - g 76 -6.8 -4.39407 | opp_overlap 902979 902980 TTAAAGAATTGAAAA GTGG ACG CCAC ATTGTTGAATTAAAA TERM 1117 904846 - 904836 - g 72 -4 -5.00616 | opp_overlap 904836 CGTTTGGTTAAAAAA TCAT TGA ATGA TGGTTACTTAGTAGG polC 902214 - 906527 + | homolog of DNA polymerase III, alpha subunit TERM 1118 906631 - 906649 + F 90 -8.1 -4.87328 | opp_overlap 906631 AACTTTAGTCACGAA GAGTGGG GTTTA CCCGCTC TTTTCTATTTGTATA Sca_0900 906678 - 907145 + | hypothetical protein TERM 1119 908418 - 908395 - g 73 -6.8 -4.33153 | overlap 908415 TTGAAGACGAAGAAA CAGCTTCT GAGATTGA AGAAGCTG CTGAAGAAGAAGCTA nusA 907167 - 908480 + | putative transcription elongation protein NusA Sca_0902 908499 - 908783 + | hypothetical protein TERM 1120 908886 - 908875 - g 74 -4.4 -5.01042 | opp_overlap 908875 AACTGAAATCAAAAA GAGA AAAG TCTC TTTAGTGATTCTTTC Sca_0903 908780 - 909085 + | putative ribosomal_L7Ae protein family protein infB 909102 - 911225 + | translation initiation factor IF-2 TERM 1121 911242 - 911267 + F 100 -9.8 -5.07275 | opp_overlap 911242 ATTATTCTATTAAAA TGCACTTTCC TTAGTT GGGAAGTGCA TTTTTGTGTATATAG TERM 1122 911267 - 911242 - f 79 -7.6 -4.2717 | opp_overlap 911242 ATTATTCTATTAAAA TGCACTTTCC TTAGTT GGGAAGTGCA TTTTTGTGTATATAG set 911431 - 912195 + | exotoxin-like protein TERM 1123 912205 - 912240 + F 82 -7.1 -4.72386 | gap 1, opp_overlap 912205 AAATAATTTAACTGA GAGGCAGTG-ACAAAT CATGA ATTTGTATACTGCTTC TTTTTAGGTAATTTA Sca_0906 912329 - 912706 + | putative member of glyoxalase/bleomycin resistance protein family TERM 1124 912748 - 912717 - f 85 -8.3 -4.42788 | gap 1, opp_overlap 912717 CTTAATCTCATAAAA TTGCTTATTTGTCA GATAT TG-CAAATAAGCAA TTTTTATTTATAGAA TERM 1125 912717 - 912748 + F 100 -9 -5.38054 | gap 1, opp_overlap 912717 CTTAATCTCATAAAA TTGCTTATTTGTCAG ATA TTG-CAAATAAGCAA TTTTTATTTATAGAA ugpQ' 912898 - 913269 + | truncated glycerophosphoryldiester phosphodiesterase (fragment 1) ugpQ'' 913375 - 913641 + | truncated glycerophosphoryldiester phosphodiesterase (fragment 2) TERM 1126 914025 - 914038 + G 80 -6.7 -4.82901 | TTGCTGTCATTTGGG GGCTT GTAG AAGCC TTTTTCTGGCCAGCA Sca_0909 913676 - 914986 + | hypothetical protein TERM 1127 915140 - 915127 - f 72 -2.5 -5.40873 | AATATAAAAAGAAAA TAAAA GGCA TTTTA CAGAAGTGAATTAAA TERM 1128 915426 - 915410 - g 74 -5.2 -4.76088 | CAAATGAAAAAAGAA TTGATG GACAT CATCAA TAACAAAGTTAAAGA rbfA 915362 - 915709 + | putative ribosome-binding factor A TERM 1129 915756 - 915730 - f 76 -9.5 -3.21194 | opp_overlap 915730 CATAAATTTTACTAA CTGCATTTCTC TAAGT GAGAGATGCAG TTTTTTAATATACAA TERM 1130 915730 - 915756 + F 100 -11.7 -5.21709 | opp_overlap 915730 CATAAATTTTACTAA CTGCATTTCTC TAAGT GAGAGATGCAG TTTTTTAATATACAA TERM 1131 916060 - 916050 - g 70 -6.8 -4.1721 | ATGGATATGGGAAAA GCCT ATG AGGC TGAGGTCACGATTGG truB 915858 - 916772 + | putative tRNA pseudouridine synthase B TERM 1132 917012 - 917002 - g 78 -5.4 -4.94109 | overlap 917006 CAAAACAAAAAAGAA CAGA TTA TCTG ACACCTTTATCAGAT TERM 1133 917292 - 917278 - g 78 -3.6 -5.28176 | opp_overlap 917278 TGTATTCAGAAAAAA TTTCAA CAA CTGAAA TTCGTCGTGCATTAA ribC 916788 - 917762 + | putative riboflavin kinase / FAD synthase RibC rpsO 917887 - 918156 + | 30S ribosomal protein S15 TERM 1134 918190 - 918216 + F 100 -8.9 -5.60993 | gap 1 CTGATACCATTTAGA GGAAAG-AACCA TCGT TGGTTTCTTTCC TTTTTTTATAGGGCA TERM 1135 919098 - 919080 - g 83 -6 -5.13741 | TTAACTGAAGAAAAA GGATTGAA AGA TGCAATCC AAACATTCGATAAAA TERM 1136 920074 - 920059 - g 76 -6.2 -4.63218 | CTGGCGGTAAGAAAA TCAATG AAAT CATTGA TGAGACAGGTGTTAA pnpA 918321 - 920426 + | polyribonucleotide nucleotidyltransferase TERM 1137 920634 - 920621 - g 78 -3.9 -5.33405 | TTTAGTAAAGAAAAA GAATA ATGA TATTC GCATCATCCCGCTTG TERM 1138 921950 - 921966 + G 70 -6.6 -4.07885 | opp_overlap 921964 TGGTATTGGTGTAGG CGATGT AGGAA ACATCG TTTTACGAGACCGTC Sca_0915 920601 - 922274 + | putative hydrolase of the metallo-beta-lactamase superfamily TERM 1139 922309 - 922342 + F 81 -8.2 -4.05319 | AAAAAGATACACAAA TGCTATGGTGTCCT CAAAAA GGGGTGCCATAGCA TTTCATATTATTTAT TERM 1140 923024 - 923041 + G 73 -3.5 -5.18866 | TATCTATTGTTGGTG TAGTTGT CTTT ACAATTA TTTTATTTATTTCCA TERM 1141 923133 - 923123 - g 73 -3.2 -5.2197 | TAGAAAAATTAAAAA CTGG AAG CCAA TCTGCAGCGATACAT TERM 1142 923973 - 923954 - g 70 -3.5 -4.99947 | TTGAATTAAATAAAA TGCCGCA TTTACT TGTGGCA GGTTCAACAGGCAGT ftsK 922534 - 924933 + | putative DNA translocase FtsK (SpoIIIE) TERM 1143 925008 - 925020 + G 79 -10.5 -3.23538 | overlap 924996 GATGGTACTTTGCAA CCGGG CGA CCCGG TTCCTAGTACATTAT TERM 1144 925162 - 925178 + G 70 -8.1 -3.37612 | AATCACAGCCTTTCT TTTATCC TTT GGATAAA TTGCTTAGCATTGGC Sca_0918 924936 - 925658 + | putative GntR family transcriptional regulator TERM 1145 926342 - 926326 - g 72 -3.8 -5.0666 | CACTGAAAAAATAAA GAATAT GTTCA ATATTC AACCGCTTACACAAG Sca_0919 925673 - 926947 + | conserved hypothetical protein with peptidase M16 inactive domain TERM 1146 927034 - 927048 + G 71 -7.2 -3.91412 | opp_overlap 927034 ATCATTCCTAAAAAA GGTTTT CAA AAAACC TTTGTAACATATACT TERM 1147 927048 - 927034 - g 85 -7.2 -5.03715 | opp_overlap 927034 ATCATTCCTAAAAAA GGTTTT CAA AAAACC TTTGTAACATATACT TERM 1148 927134 - 927144 + G 73 -5.4 -4.58395 | TAACTGTTCCTGATG GTGT AGC ACAC TTTTTAGAACATAAA Sca_0920 926944 - 928230 + | conserved hypothetical protein with M16 domain Sca_0921 928230 - 928937 + | putative short-chain dehydrogenase Sca_0922 929066 - 929905 + | hypothetical protein Sca_0923 929927 - 930325 + | putative DNA-binding protein TERM 1149 930622 - 930645 + G 80 -9.8 -3.5774 | ACTTGTTGCGAGTGC TCTAATTGTA CTTG TACAATTAGA TTTAACCAATTCAGT pgsA 930356 - 930934 + | putative phosphatidylglycerophosphate synthase TERM 1150 931283 - 931269 - g 71 -8.6 -3.2024 | opp_overlap 931268 TAGAAGAAAATGATA CTGTCA TCA TGACAG GTGGCTTAGGGCCTA Sca_0925 931085 - 932227 + | hypothetical protein recA 932399 - 933466 + | RecA protein (recombinase A) TERM 1151 933482 - 933507 + F 95 -7.6 -5.47218 | TTAAGTAGTAAAGTT GAGCCTGTTT TCAAGT GGACAGGCTC TTTTTTTACATAGCA TERM 1152 935167 - 935146 - g 70 -6.7 -4.03978 | gap 1 AAGCTGGTAGAGAAA TCAGAGTGAT TGT ATCAC-CTGA TGAAATTGATGATTT Sca_0927 933741 - 935300 + | hypothetical protein TERM 1153 935338 - 935316 - T 81 -9.1 -3.60151 | opp_overlap 935316 TTTTTGAAATCATAA CCCTAGACC ATGAA GGTCTGGGG TTTTATTATTTCCGA TERM 1154 935316 - 935338 + T 100 -11.3 -5.00196 | opp_overlap 935316 TTTTTGAAATCATAA CCCTAGACC ATGAA GGTCTGGGG TTTTATTATTTCCGA Sca_0928 936400 - 935408 - | hypothetical protein Sca_0929 936522 - 937346 + | putative LysR family transcriptional regulator TERM 1155 937341 - 937399 + T 100 -25.8 -5.32565 | opp_overlap 937344 937357 AATAAATTTACAAAG GAATAGGCAATAAAAATAGGACATACCG CTT CGGTATGTCCTATTTTTATTGCTTTATC TTTTTTAATTAATTA TERM 1156 937396 - 937344 - T 100 -23.9 -3.63662 | opp_overlap 937341, overlap 937357 AAATTTACAAAGGAA TAGGCAATAAAAATAGGACATACCG CTT CGGTATGTCCTATTTTTATTGCTTT ATCTTTTTTAATTAA TERM 1157 937383 - 937357 - T 100 -18.2 -5.12971 | opp_overlap 937341, overlap 937344 AATAGGCAATAAAAA TAGGACATACCG CTT CGGTATGTCCTA TTTTTATTGCTTTAT Sca_0930 937630 - 937412 - | hypothetical protein Sca_0931 937891 - 938691 + | putative metallo-phosphoesterase family protein TERM 1158 939526 - 939508 - g 73 -8.8 -3.38768 | opp_overlap 939507 939506 GTATATGATTGATAA TCTGCCGA AAG TCGGCGGA ACTGTTATTCAAACT TERM 1159 939704 - 939672 - g 76 -8 -4.08706 | gap 2 CTGGTATGACAGAAA CTCCGC-TTGT-TATT ATC AATACACAACGCGGAG GCCCTTCTACAGGAT Sca_0932 938798 - 940573 + | putative pyruvate flavodoxin/ferredoxin oxidoreductase TERM 1160 940611 - 940601 - g 70 -6.8 -4.08317 | opp_overlap 940601 940600, overlap 940597 TAACGTTAAACCAAA CTGG TGT CCAG GTTGTGGTGACTTCT Sca_0933 940560 - 941426 + | putative 2-oxoglutarate ferredoxin oxidoreductase, beta subunit TERM 1161 941438 - 941489 + F 86 -5.4 -5.61881 | gap 1, opp_overlap 941477, overlap 941484 TTAATAAATATAATA GCTTTCATTATGTTGTTAATAGGGT ATA AACCTATAAA-GGCTTAATGAAAGC TTTTTCTTTTTGAAA Sca_0934 941627 - 942148 + | hypothetical protein Sca_0935 942230 - 942520 + | hypothetical protein TERM 1162 942545 - 942584 + F 100 -8.1 -5.95539 | gap 1, overlap 942540 942538 ATATTTATTGCTTGA GGCTCAAGTATTCA-CTT TTTAC ATGATGAATACTTGAGTC TTTTTTTATTTGCAA appA 942711 - 944294 + | putative oligopeptide-binding protein AppA (Precursor) TERM 1163 944405 - 944370 - f 77 -7.1 -4.34737 | opp_overlap 944377 944378, overlap 944366 944378 TTAGTAAGCAATAAA GTTAAAAACTTTGAA GTTTCT TTCAAAGGTTCTAAC CCTGCAAATGAATGG TERM 1164 944397 - 944378 - f 74 -5.1 -4.86939 | opp_overlap 944377 944378, overlap 944366 944370 CAATAAAGTTAAAAA CTTTGAA GTTTCT TTCAAAG GTTCTAACCCTGCAA TERM 1165 944487 - 944437 - f 100 -12.2 -4.96501 | gap 1, opp_overlap 944452, overlap 944438 CTGTAGAAAAATAAA GTTTTGCTT-GTAAAAGCCTCGA TAGATT TCGAGGCTTTTTCTAAGCAAAAG AGGAGTGTTTAAATT TERM 1166 944486 - 944438 - f 100 -15.7 -3.56816 | gap 1, opp_overlap 944452, overlap 944437 TGTAGAAAAATAAAG TTTTGCTT-GTAAAAGCCTCGA TAGATT TCGAGGCTTTTTCTAAGCAAAA GAGGAGTGTTTAAAT TERM 1167 944452 - 944471 + F 100 -9.3 -4.82901 | opp_overlap 944438 944437 GTTTTGCTTGTAAAA GCCTCGA TAGATT TCGAGGC TTTTTCTAAGCAAAA TERM 1168 944879 - 944860 - g 70 -3 -5.10497 | opp_overlap 944825 AACTTATTGAAAAAA TAATTTTA CATC TAAAACTA AGTAAAAAAGATGCA TERM 1169 945145 - 945112 - g 81 -6.9 -4.54026 | opp_overlap 945117 945122, overlap 945117 945122 TTTTAAAGAAAATAA GAAAAGAAAATGATA TGTC TATCATATTCATTTC ACATGATTTAGCTGT TERM 1170 945140 - 945117 - g 81 -5.4 -5.14949 | opp_overlap 945117 945122, overlap 945112 945122 AAGAAAATAAGAAAA GAAAATGATA TGTC TATCATATTC ATTTCACATGATTTA TERM 1171 945135 - 945122 - g 78 -3.9 -5.33124 | opp_overlap 945122 945117, overlap 945117 945112 AATAAGAAAAGAAAA TGATA TGTC TATCA TATTCATTTCACATG appD' 944670 - 945482 + | truncated oligopeptide transport ATP-binding protein appD appF 945495 - 946481 + | putative oligopeptide transport system ATP-binding protein AppF appB 946478 - 947443 + | putative oligopeptide transport system permease protein AppB TERM 1172 947494 - 947482 - g 70 -2.7 -5.20783 | overlap 947483 ATTTAAAGATAAAAA CGAAA GCA TTTCA CCATTAAAAAGTGCA appC 947456 - 948355 + | putative oligopeptide transport system permease protein AppC TERM 1173 949821 - 949810 - g 71 -4.4 -4.8622 | CGTTTGAATCAAAAA GTAG GTTA CTAC TCAGAACGCGCATTA Sca_0941 948517 - 950058 + | putative radical SAM superfamily protein Sca_0942 950058 - 950414 + | hypothetical protein Sca_0943 950446 - 950943 + | hypothetical protein TERM 1174 950985 - 950943 - T 100 -18.8 -2.84325 | opp_overlap 950950, overlap 950950 GCTGCCTAAAGATTA GAAAAAATCCGCTTCAGA AACACAA TCTGAAGCGGATTTCTTC ACTTAATAAGCACTT TERM 1175 950978 - 950950 - T 100 -13.3 -5.38321 | opp_overlap 950950, overlap 950943 AAAGATTAGAAAAAA TCCGCTTCAGA AACACAA TCTGAAGCGGA TTTCTTCACTTAATA TERM 1176 950950 - 950978 + T 100 -13.3 -4.26351 | opp_overlap 950950 950943 AAAGATTAGAAAAAA TCCGCTTCAGA AACACAA TCTGAAGCGGA TTTCTTCACTTAATA glpQ 951950 - 950988 - | putative glycerophosphoryl diester phosphodiesterase TERM 1177 952414 - 952396 - g 74 -7.5 -3.88787 | CCAGAGTCTTAGAAA TCACGTT GACAA AACGTGA TGCAAAAAAAGAAAA mutS 952257 - 954866 + | putative DNA mismatch repair protein MutS TERM 1178 956071 - 956051 - g 70 -5.5 -4.37247 | opp_overlap 956051 956053 AAACGAATGAACAAA CATCAGA GAATGGA TCTGATG CTTCTTATCAAGCTG mutL 954880 - 956820 + | putative DNA mismatch repair protein MutL TERM 1179 957129 - 957099 - g 73 -3.4 -5.19261 | opp_overlap 957117 AAAGTGATTAAAAAA GCAAAATCTTTA AAAGTGG CAACGATTTTGC GTATTTTCGTTATCG glpP 956832 - 957365 + | putative glycerol uptake operon antiterminator regulatory protein glpF 957534 - 958349 + | glycerol uptake facilitator glpK 958523 - 960028 + | glycerol kinase TERM 1180 960077 - 960126 + F 77 -4.5 -5.243 | gap 1 AAATGTACTCGAGAA TGAGAGAACTGTTC-GTACAATTT TAT GAAATGTATGGGATAGGTCTCTCA TTTTTTAATACTTTA glpD 960205 - 961875 + | aerobic glycerol-3-phosphate dehydrogenase TERM 1181 961892 - 961919 + F 100 -10.7 -5.28176 | opp_overlap 961895 AAGATTTTACTTTAA GGAGCAAGCAT GCTGAA ATGTTTGCTCC TTTTTTGTGCCTGCA TERM 1182 962308 - 962284 - g 76 -9.3 -3.43109 | overlap 962287 GACATTATTGAAAGA GAACGCGGTCA TTA TGACAGCATTC AAATTGTGGCCTCAG TERM 1183 962667 - 962679 + G 78 -5.5 -4.98531 | TAAATATTGTGATGA TCCGT ATT GCGGA TTTTTAGTTTCAAAC Sca_0951 962065 - 963015 + | putative hydrolase miaA 963002 - 963952 + | putative tRNA delta(2)-isopentenylpyrophosphate transferase Sca_0953 963954 - 964169 + | putative Hfq protein TERM 1184 964377 - 964358 - T 81 -9.4 -3.6106 | CGCAACAGTGGGAAA TCAATACC AAAA GGTATTGA AAAAGCTGTAGCGTG Sca_0954 964924 - 964451 - | putative glutathione peroxidase TERM 1185 965806 - 965837 + G 70 -6.8 -4.12254 | overlap 965830 AGATCCAAAGACACG TCAAATTCAAATCA ACGA TGGTTTTAATTTGA TTATTTCTGATACTG Sca_0955 965072 - 966334 + | similar to GTP-binding protein HflX TERM 1186 966741 - 966724 - g 74 -4.9 -4.87803 | gap 1 CAGTTTGAAAGAAAA TGGCG-TA GCG TATCGCCA AGTACCGTTATCACT Sca_0956 966335 - 967573 + | putative aluminium resistance protein family protein TERM 1187 967627 - 967596 - T 89 -10.3 -3.70742 | opp_overlap 967603, overlap 967603 AAAAGTTTAAGATAA CAAAAAAGAGGCC AATAAA GGCCTCTTTTTTT ATCCCATTTGTTTAG TERM 1188 967620 - 967603 - T 95 -8.4 -5.64304 | opp_overlap 967603, overlap 967596 TAAGATAACAAAAAA GAGGCC AATAAA GGCCTC TTTTTTTATCCCATT TERM 1189 967603 - 967620 + T 95 -8.4 -5.63504 | opp_overlap 967603 967596 TAAGATAACAAAAAA GAGGCC AATAAA GGCCTC TTTTTTTATCCCATT glnA 969013 - 967673 - | glutamine synthetase TERM 1190 967883 - 967895 + g 71 -4.9 -4.55128 | ACGTTCGTCACGGTT CATTT CAT AAATG TTTTGGTTTACAGGT TERM 1191 967913 - 967923 + g 78 -4 -5.3104 | overlap 967901 TTGGTTTACAGGTTC TGAA ACT TTCA TTTTGTTTTTAATAC Sca_0958 969397 - 969032 - | putative HTH-type transcriptional regulator ,MerR family TERM 1192 969605 - 969577 - R 82 -6.1 -5.2189 | gap 1, opp_overlap 969577 TTAATCATTAAAAAA TCAGGCAATGCT AGTTAA AGCAC-GCCTGA TTTTTATCGCATATT Sca_0959 969983 - 969624 - | hypothetical protein Sca_0960 970268 - 970897 + | truncated putative cardiolipin synthetase (fragment 1) Sca_0961 971022 - 971837 + | truncated putative cardiolipin synthetase (fragment 2) TERM 1193 971847 - 971879 + T 100 -14.4 -5.48163 | gap 1, opp_overlap 971847 CTATAGAGATGAAAA TTCCAGCT-ATCCTG TTTT CAGGATGAGCTGGAA TTTTTTACTTTCTTT TERM 1194 971879 - 971847 - T 100 -14.4 -4.41353 | gap 1, opp_overlap 971847 CTATAGAGATGAAAA TTCCAGCT-ATCCTG TTTT CAGGATGAGCTGGAA TTTTTTACTTTCTTT Sca_0962 972114 - 971884 - | hypothetical protein TERM 1195 972618 - 972600 - g 74 -3 -5.40464 | opp_overlap 972600, overlap 972602 972603 TATGATAAAGAAAAA CATGACCA ATA TGGTCGAG ATTTAGTATATGTGT nuc 972249 - 972791 + | thermonuclease NucH/NucI TERM 1196 972802 - 972847 + F 100 -12.9 -5.20781 | opp_overlap 972802 ATTAAATTGAGCAAA TAGGGACAATATCTTTTTGGA ATTA TACAAAAGGGTATTGTTCCTA TTTTATTTTGTAATA Sca_0964 972920 - 973801 + | similar to transport system binding proteins TERM 1197 973825 - 973847 + T 100 -13.5 -5.05116 | opp_overlap 973825 TCTAACAAATAAGAA CCGAGGAGA AAATA TCTCCTCGG TTTTCTTGTTTATAC TERM 1198 973847 - 973825 - T 100 -13.5 -4.21772 | opp_overlap 973825 TCTAACAAATAAGAA CCGAGGAGA AAATA TCTCCTCGG TTTTCTTGTTTATAC Sca_0965 974729 - 973872 - | hypothetical protein TERM 1199 974896 - 974858 - R 100 -13.5 -4.73682 | opp_overlap 974856 974853 TTTGACAATATAAAA GCAGTTTAAGCAAAA TATAGCTGG TTTTGCTTAAACTGC GATAATTGTGTCAGT Sca_0966 975343 - 974972 - | hypothetical protein Sca_0967 975537 - 976007 + | hypothetical protein Sca_0968 976105 - 976692 + | hypothetical protein TERM 1200 976734 - 976696 - T 75 -5.5 -4.77036 | gap 2, opp_overlap 976696 GTCCATTATTAAAAA CAAGAGCGTTG-C-TACTT TCA AAGTTTGACAACACTCTTG TTTAAAATGATGAGA Sca_0969 978162 - 976783 - | putative aspartokinase TERM 1201 977584 - 977598 + g 77 -2.8 -5.50499 | opp_overlap 977585, overlap 977585 ACCGCCTCTAGGAAA AGTAAC AAT GTTACC TTTTTTTGAATATCC TERM 1202 979519 - 979503 - g 77 -8.1 -3.86346 | TTACCGCTGCATAAA TCACTTA AAG TAAGTGA ACATAGTGCAGATAC TERM 1203 979560 - 979580 + G 72 -8.3 -3.48276 | opp_overlap 979558 979562, overlap 979554 GTAGTTGAAGGTACA GATGTCCCT GTT AGCGACATC TTATCTCAAGGAAAA hom 978354 - 979634 + | putative homoserine dehydrogenase TERM 1204 979907 - 979920 + G 70 -8.1 -3.29461 | opp_overlap 979902 979900 ACAGGTAACACTTCA GCTGC AGCA GCAGC TTATGCAGCACGTTC thrC 979640 - 980707 + | threonine synthase thrB 980707 - 981621 + | putative homoserine kinase Sca_0973 981677 - 982483 + | putative hydrolase of the HAD superfamily TERM 1205 982526 - 982490 - T 100 -11.8 -4.96996 | opp_overlap 982490 TTGAAATAAAATAAA CAAAGGATACTCATCT GAAAT AATTGAGTATCCTTTG TTTTTGCTTATTTTG TERM 1206 982490 - 982526 + T 100 -10.3 -5.07971 | opp_overlap 982490 TTGAAATAAAATAAA CAAAGGATACTCATCTG AAA TAATTGAGTATCCTTTG TTTTTGCTTATTTTG Sca_0974 982848 - 982534 - | hypothetical protein TERM 1207 982954 - 982934 - R 100 -11.2 -5.96894 | opp_overlap 982934 AGTTAAATAAAAAAA CAGGTTGG AAATA CCAACCTG TTTAAAGTATGTTAC TERM 1208 982934 - 982954 + r 93 -11.2 -3.66883 | opp_overlap 982934 AGTTAAATAAAAAAA CAGGTTGG AAATA CCAACCTG TTTAAAGTATGTTAC Sca_0975 984429 - 982966 - | putative amino acid permease TERM 1209 984690 - 984656 - R 95 -8.1 -5.59502 | gap 1, opp_overlap 984649 984656 TAAAAAATGAAAAAA GTGAACTTAAACGTTA TATA TAACGGT-AAGTTCAC TATCGTCGTTTCGTC rpmG 984891 - 984742 - | 50S ribosomal protein L33 TERM 1210 985114 - 985100 - H 75 -7.2 -4.08706 | opp_overlap 985088 985100 GTGTTATGATATAAA TCGTAA TAA TTACGA TTATAAATAATTATT TERM 1211 985198 - 985186 - g 84 -4.8 -5.38549 | opp_overlap 985186 GTTAAAGAACAAAAA CGAG AAGAA CTCG TTGCTAAATATTACG rpsN 985150 - 985419 + | putative 30S ribosomal protein S14 TERM 1212 985458 - 985479 + F 85 -7.4 -4.96435 | opp_overlap 985456 985458 CTTAGTTTTAGAACA CACATTTC TTTGAT GAAATGTG TTCTTTTTTTGTTCA TERM 1213 985866 - 985844 - g 77 -2.9 -5.52384 | gap 1, opp_overlap 985844, overlap 985799 CTTTTATCAAAAAAA TGCAAGATAA AGGA TTAT-TTGCA TCTATTTCAGTAGGT guaC 985606 - 986583 + | GMP reductase TERM 1214 987411 - 987401 - g 76 -6.8 -4.37734 | opp_overlap 987401, overlap 987395 CATAATAACTTAAAA GGTG AAT CACC TTTTGATCGAATGCA TERM 1215 987401 - 987411 + G 73 -6.8 -4.26903 | opp_overlap 987401 987395 CATAATAACTTAAAA GGTG AAT CACC TTTTGATCGAATGCA Sca_0979 986606 - 987625 + | hypothetical protein TERM 1216 987666 - 987631 - T 100 -22 -5.45726 | opp_overlap 987631 TACAGGTTAAAAAAA TCACCTCGGGTCTGAG AAAT CTCAGTCCCGAGGTGA TTTTTACGTGCTGAT TERM 1217 987631 - 987666 + T 100 -22 -4.68994 | opp_overlap 987631 TACAGGTTAAAAAAA TCACCTCGGGTCTGAG AAAT CTCAGTCCCGAGGTGA TTTTTACGTGCTGAT lexA 988342 - 987719 - | DNA damage-inducible repressor LexA (DinR) TERM 1218 988276 - 988293 + g 70 -2.7 -5.10968 | opp_overlap 988276 CACTAGGCGGATAAC CTTTTGT GTGG ACAACAG TTTTTATATATTCAT Sca_0981 988486 - 988719 + | hypothetical protein TERM 1219 988890 - 988878 - g 70 -3.5 -4.94703 | AACATAAAAAAACAA TTAAT AGA ATTAA TGAACTTTCAAAGAA Sca_0982 988853 - 989095 + | hypothetical protein TERM 1220 989132 - 989160 + F 100 -12.5 -5.60993 | opp_overlap 989129 989128 TTTAAAATAGAGCTA TACCGCATCAGCA TAG TGTTGAAGCGGTA TTTTTTTATAAAAAA TERM 1221 989491 - 989509 + G 78 -9.6 -3.52918 | overlap 989487 TAGATTCATCTTGTC TGCAGGAC ATG GTTCTGCA TTGCTTTACAGCTTA tkt 989297 - 991285 + | putative transketolase Sca_0984 991474 - 991704 + | hypothetical protein Sca_0985 991994 - 992461 + | hypothetical protein TERM 1222 992479 - 992508 + F 100 -13 -3.72576 | opp_overlap 992479 CATATTCACTAACAA TGGACGCTTTCT TAATAT AGGAAGCGTCCA TTTGCTGAAAAAGGG TERM 1223 992508 - 992479 - f 91 -10.8 -3.74361 | opp_overlap 992479 CATATTCACTAACAA TGGACGCTTTCT TAATAT AGGAAGCGTCCA TTTGCTGAAAAAGGG Sca_0986 992564 - 992650 + | hypothetical protein TERM 1224 992678 - 992714 + F 100 -17.6 -3.60214 | opp_overlap 992678, overlap 992682 TGCATAAATAAAAAA CAAACCGCTTATTTTC AATGA GAAGATAAGCGGTTTG TTATATAATTGGGGT TERM 1225 992714 - 992678 - f 100 -15.4 -5.72622 | opp_overlap 992678 992682 TGCATAAATAAAAAA CAAACCGCTTATTTTC AATGA GAAGATAAGCGGTTTG TTATATAATTGGGGT TERM 1226 992682 - 992710 + F 100 -12.6 -4.42721 | opp_overlap 992678, overlap 992678 TAAATAAAAAACAAA CCGCTTATTTTC AATGA GAAGATAAGCGG TTTGTTATATAATTG Sca_0987 992744 - 993871 + | putative exonuclease TERM 1227 994673 - 994663 - g 70 -6.8 -4.07975 | opp_overlap 994663 GAAGTTAAGCATAAA GCTG AAA CAGC TTATCGAGATGCTGA Sca_0988 993868 - 996903 + | putative ATPase involved in DNA repair TERM 1228 996914 - 996936 + T 100 -13.5 -5.27938 | opp_overlap 996914 TTTAACATACAAAAA CGACTTGCG TGATT CGCAAGTCG TTTTTATTTAGAAAT TERM 1229 996936 - 996914 - T 100 -13.5 -5.10064 | opp_overlap 996914 TTTAACATACAAAAA CGACTTGCG TGATT CGCAAGTCG TTTTTATTTAGAAAT mscL 997377 - 996955 - | putative large-conductance mechanosensitive channel TERM 1230 997707 - 997724 + H 72 -4.3 -5.02074 | opp_overlap 997696, overlap 997696 AAAATGATTTTTTCT TATAAAA TCAG TTTTATA TTTTTTGGACAATAA opuD 997766 - 999400 + | glycine betaine transporter opuD TERM 1231 999417 - 999441 + F 100 -12.2 -5.55769 | opp_overlap 999414 ATGATTAAATCATGA CTACCTCGCA AATGA TGCGGGGTAG TTTTTTGTTATAAAG citB 999660 - 1002365 + | aconitate hydratase (aconitase) TERM 1232 1002397 - 1002430 + F 100 -11.9 -5.03227 | AGGCTTGAATAGATT GAGGCTGAGATAGTG TCCT TACTATCTTAGTCTC TTTTATTTGTGATAT Sca_0992 1002485 - 1002946 + | putative thioesterase superfamily protein TERM 1233 1002983 - 1002958 - T 100 -13.3 -4.9755 | opp_overlap 1002958 ATAGATAATGAAAAA CGCGCAGCTGC TTTA ACAACTGCGCG TTCAATCTAACTCTA TERM 1234 1002958 - 1002983 + T 81 -10.4 -3.14026 | opp_overlap 1002958 ATAGATAATGAAAAA CGCGCAGCTG CTTTAA CAACTGCGCG TTCAATCTAACTCTA Sca_0993 1003318 - 1003001 - | hypothetical protein TERM 1235 1003493 - 1003514 + r 77 -8.7 -3.65514 | opp_overlap 1003493, overlap 1003489 AAAAAATAATAAAAA CTGGAGCAT TAAA ATGCCCCAG TTCGTTTCATTTACA TERM 1236 1003514 - 1003493 - R 100 -10.9 -5.54403 | opp_overlap 1003493 1003489 AAAAAATAATAAAAA CTGGAGCAT TAAA ATGCCCCAG TTCGTTTCATTTACA Sca_0994 1004133 - 1003525 - | hypothetical protein TERM 1237 1004944 - 1004922 - g 90 -7 -5.15381 | AAGACACGTAAAAAA GGTACGAAAG TCA CTTTCAAACC TAATCCTGAAATCTT TERM 1238 1005585 - 1005573 - g 73 -6.2 -4.46432 | overlap 1005582 1005583 AAAAAAGCAGTAAAA GCGC AACAA GCGC GTGAAGCCGCACGTA parE 1004424 - 1006424 + | topoisomerase IV subunit B TERM 1239 1008775 - 1008757 - g 73 -9 -3.41988 | opp_overlap 1008766 TCTTACTGAACAATA TACAAATG GTT CATTTGTA GTGGATACAGATGAA parC 1006421 - 1008847 + | topoisomerase IV subunit A TERM 1240 1008899 - 1008854 - f 73 -5.5 -4.5774 | opp_overlap 1008860, overlap 1008858 1008859 GATGAATAATTAAAA TTAATTGCTGTTTGAATAGGT TATG ACCTACTCAAACAGCTTTTTT AATAAGTGCAATTCT TERM 1241 1008895 - 1008858 - f 91 -10.7 -3.78229 | opp_overlap 1008860, overlap 1008854 1008859 AATAATTAAAATTAA TTGCTGTTTGAATAGGT TATG ACCTACTCAAACAGCTT TTTTAATAAGTGCAA TERM 1242 1008894 - 1008859 - f 100 -14.2 -2.8531 | opp_overlap 1008860, overlap 1008858 1008854 ATAATTAAAATTAAT TGCTGTTTGAATAGGT TATG ACCTACTCAAACAGCT TTTTTAATAAGTGCA TERM 1243 1008860 - 1008893 + F 100 -15.5 -5.1675 | opp_overlap 1008859 1008858 1008854 TAATTAAAATTAATT GCTGTTTGAATAGGT TATG ACCTACTCAAACAGC TTTTTTAATAAGTGC Sca_0997 1009139 - 1010602 + | putative amino acid carrier protein (sodium:alanine symporter family) TERM 1244 1010613 - 1010638 + F 82 -5.4 -5.43866 | overlap 1010616 AATAATTATATTTCA GCACACCGGA ACATAC TTCGGTGTTC TTTTTTTAGGAATTC TERM 1245 1010616 - 1010635 + F 75 -5.7 -4.79949 | overlap 1010613 AATTATATTTCAGCA CACCGGA ACATAC TTCGGTG TTCTTTTTTTAGGAA TERM 1246 1010709 - 1010722 + F 70 -3.9 -5.06451 | ATGGACACTAATATT GAATA ATTA TATTC TTTTTTAAAATGATG glcT 1010782 - 1011645 + | transcription antiterminator GlcT TERM 1247 1011658 - 1011704 + F 100 -13.3 -5.69793 | gap 1 TAACTAATTCGATTA GGCATGAGTGATGAAGTTTGGA GCAA TCCAA-CTTTTTTACTCATGCC TTTTTTGTTTGCTGT TERM 1248 1012126 - 1012113 - g 88 -8.1 -4.66953 | overlap 1012117 GTAACACCTGAAAAA GCAGC AGAT GCTGC AACAGGATTTGCGAA glcA 1011768 - 1013795 + | glucose-specific phosphotransferase system enzyme II, factor IIA TERM 1249 1013852 - 1013894 + F 93 -8.1 -5.12707 | gap 2, opp_overlap 1013867 1013868, overlap 1013868 ATGTAACAGATTTCA GACATGGACAATGAATCTAGT AAA ACTAG-TTT-TTGTTCATGTC TTTTTTAGAATTTAC TERM 1250 1013868 - 1013880 + F 82 -6.3 -5.17744 | opp_overlap 1013868 1013867, overlap 1013852 ACATGGACAATGAAT CTAGT AAA ACTAG TTTTTGTTCATGTCT TERM 1251 1014002 - 1014016 + G 78 -6.4 -4.6971 | opp_overlap 1013985 TGCCAGTTGCAATTT TACCGG CCG CTGGTA TTTTATTAACGTTTG glcB 1013926 - 1016004 + | glucose-specific phosphotransferase system enzym II, factor IIB TERM 1252 1016043 - 1016021 - f 79 -10.6 -2.90194 | opp_overlap 1016021, overlap 1016023 ATTGTTTGAAGGAGA GAGCAATCTG ATA CAGGTTGCTC TTTTTTGATACCTTC TERM 1253 1016021 - 1016043 + F 100 -12.8 -5.18357 | opp_overlap 1016021 1016023 ATTGTTTGAAGGAGA GAGCAATCTG ATA CAGGTTGCTC TTTTTTGATACCTTC Sca_1001 1016219 - 1017445 + | putative permease TERM 1254 1017460 - 1017494 + F 100 -12.3 -4.92239 | opp_overlap 1017460 ATACAGGCACTCAAA CAGGCAATGACACTT TTGTT AGGTGTGATTGCCTG TTTTTAAATTTTTAA TERM 1255 1017494 - 1017460 - f 83 -10.1 -3.6806 | opp_overlap 1017460 ATACAGGCACTCAAA CAGGCAATGACACTT TTGTT AGGTGTGATTGCCTG TTTTTAAATTTTTAA TERM 1256 1018620 - 1018601 - g 74 -3.6 -5.14563 | TCTCTTATCAAAAAA CAGTATTC TCTA AAATACCG TCATTATCTTTAGGT fmtC 1017619 - 1020144 + | oxacillin resistance-related FmtC protein TERM 1257 1020157 - 1020184 + F 100 -10.7 -5.37345 | opp_overlap 1020157 TAGTAATATTATCAA CCTGATTGTCT GGATTA AGGCAATCAGG TTTTTTGTGATTAAA TERM 1258 1020184 - 1020157 - f 72 -8.5 -3.28637 | opp_overlap 1020157 TAGTAATATTATCAA CCTGATTGTCT GGATTA AGGCAATCAGG TTTTTTGTGATTAAA TERM 1259 1020266 - 1020248 - f 75 -4.6 -5.16572 | overlap 1020251 AGGGAATGTAAAAAA TTATCTGA TTT TCAGAAAA ACGAGAATAGTCTGT TERM 1260 1020432 - 1020455 + F 80 -2.4 -5.80817 | overlap 1020412 1020434 AGATAAGAGATCTTT AAGTCTATCT TTTC AGGTAGGCTA TTTTTTTATGTTAAA TERM 1261 1020434 - 1020453 + F 70 -5 -4.53737 | overlap 1020432 ATAAGAGATCTTTAA GTCTATCT TTTC AGGTAGGC TATTTTTTTATGTTA cysD 1020488 - 1021768 + | putative O-acetylhomoserine (thiol)-lyase (homocysteine synthase) metA 1021770 - 1022663 + | putative homoserine O-succinyltransferase TERM 1262 1022688 - 1022727 + T 100 -11.7 -4.94902 | opp_overlap 1022688 GTTTATAAATATAAA TATGGTAAGAAAGTCTA TTGTTT TAGGCTCTCTTACCATA TTTTTGTGCTGCTTA TERM 1263 1022727 - 1022688 - T 100 -11.7 -4.40003 | opp_overlap 1022688 GTTTATAAATATAAA TATGGTAAGAAAGTCTA TTGTTT TAGGCTCTCTTACCATA TTTTTGTGCTGCTTA msrA 1023255 - 1022740 - | putative peptide methionine sulfoxide reductase I Sca_1006 1023397 - 1024413 + | putative cell envelope-related transcriptional attenuator TERM 1264 1024466 - 1024411 - T 100 -11.6 -5.46129 | gap 1, opp_overlap 1024420 1024465, overlap 1024414 1024420 CAACAAAGTAAAAAA TAATTA-AAAGCCTGAGAAGTTAAGTT TTG AACTTAATTTCTCAGGCTTTCTTGTTA TCAATATTATTGATC TERM 1265 1024462 - 1024414 - T 100 -12.7 -4.76088 | opp_overlap 1024420, overlap 1024411 1024420 CAAAGTAAAAAATAA TTAAAAGCCTGAGAAGTTAAGTT TTG AACTTAATTTCTCAGGCTTTCTT GTTATCAATATTATT TERM 1266 1024420 - 1024456 + T 100 -20.5 -4.52415 | opp_overlap 1024414 1024411 1024420 AAAAAATAATTAAAA GCCTGAGAAGTTAAGTT TTG AACTTAATTTCTCAGGC TTTCTTGTTATCAAT TERM 1267 1024456 - 1024420 - T 100 -18.3 -4.72772 | opp_overlap 1024420, overlap 1024414 1024411 AAAAAATAATTAAAA GCCTGAGAAGTTAAGTT TTG AACTTAATTTCTCAGGC TTTCTTGTTATCAAT Sca_1007 1024658 - 1024473 - | putative keto-enol isomerase TERM 1268 1024781 - 1024741 - H 74 -7.2 -4.01369 | opp_overlap 1024741, overlap 1024739 AATAATTTAAAAACA GAACATTTGTTCTT TAAGTTGTTGAAT AAGAACAAATGTTC GCATATAATAAAAGT Sca_1008 1024819 - 1025742 + | truncated ImpB/MucB/SamB family protein (fragment 1) Sca_1009 1025708 - 1026082 + | truncated ImpB/MucB/SamB family protein (fragment 2) TERM 1269 1026119 - 1026086 - T 100 -13.3 -4.89729 | opp_overlap 1026078 CATAAAATGTAAAAA GCTCGTTATCCTACT TGGA ATTAGGACAACGAGC TAAATGCGGTGTTTC tyrA 1027228 - 1026134 - | putative prephenate dehydrogenase TERM 1270 1026758 - 1026770 + g 76 -6.3 -4.5442 | ATTTTGGATTTTTTC TGATG CTG CATCA TTTTCTGGTTCAGAG TERM 1271 1028185 - 1028165 - g 86 -5.5 -5.31275 | overlap 1028181 CCTTATCATAAAAAA TTACGTCAA CAC TTAACGCAA TTATGCGAGACAAAC Sca_1011 1027364 - 1028404 + | putative peptidase TERM 1272 1028659 - 1028702 + F 85 -5.5 -5.47159 | gap 2 GTTGAACTAAGGTGG CACCACGGTAACAC-GT-CCT TATT GGGAATAGTGTTATTGTGGTG TTTTTTATATTAAAA TERM 1273 1028878 - 1028853 - f 75 -9.1 -2.93381 | overlap 1028850 TAAATCGGGAAATGA GTGAGCAGTTA TGAC TAACTGCTAAC AAAGGTGGTACCGCG TERM 1274 1028925 - 1028900 - f 80 -9 -3.86897 | opp_overlap 1028900, overlap 1028921 GGTACCGCGCAGAAA GCGTCCTTGT TTAAAT ACAAGGGCGC TTTTTTGTCGCCGAA TERM 1275 1028900 - 1028925 + F 100 -11.2 -5.24129 | opp_overlap 1028900 1028921 GGTACCGCGCAGAAA GCGTCCTTGT TTAAAT ACAAGGGCGC TTTTTTGTCGCCGAA trpE 1028957 - 1030366 + | putative anthranilate synthase component I trpG 1030363 - 1030986 + | putative anthranilate synthase component II trpD 1030931 - 1031947 + | putative anthranilate phosphoribosyltransferase trpC 1031940 - 1032707 + | putative indole-3-glycerol phosphate synthase TERM 1276 1033290 - 1033275 - g 70 -5.4 -4.50159 | CGGAATCGAAACAAA TGGATC TAAA GACCCA ATGAAAATGAAAGAA trpF 1032712 - 1033341 + | putative phosphoriborylanthranilate isomerase TERM 1277 1033804 - 1033786 - g 70 -8.2 -3.31208 | opp_overlap 1033786 1033784, overlap 1033784 1033782 1033779 TGGGAGAAGAAGATA TTCAACGC CAA GCATTGAA TGTTTTCAGAATGGA trpB 1033338 - 1034567 + | tryptophan synthase beta chain trpA 1034560 - 1035312 + | putative tryptophan synthase alpha chain TERM 1278 1035357 - 1035324 - f 72 -5.3 -4.69028 | opp_overlap 1035327, overlap 1035319 1035327 ATAATATATATAAAA CAAGAGGTTGGAAAA GTGA TATTCCAGCCTCTTT TTTAGGTGTTATCAT TERM 1279 1035327 - 1035354 + F 100 -9.2 -5.17054 | opp_overlap 1035324 1035319 1035327 ATATATATAAAACAA GAGGTTGGAAAA GTGA TATTCCAGCCTC TTTTTTAGGTGTTAT TERM 1280 1035354 - 1035327 - f 76 -7 -4.42325 | opp_overlap 1035327, overlap 1035324 1035319 ATATATATAAAACAA GAGGTTGGAAAA GTGA TATTCCAGCCTC TTTTTTAGGTGTTAT TERM 1281 1035911 - 1035899 - g 73 -6.3 -4.53034 | TTTAGAGAATTAAAA GCTTA TGT TAAGC AATACAATGCATTAT femA 1035617 - 1036873 + | factor essential for expression of methicillin resistance, FemA TERM 1282 1037793 - 1037783 - g 78 -5.4 -4.92756 | overlap 1037784 ATGACCAAAAAGAAA TGCT TAA AGCA AGCGAATTACGCCAA femB 1036900 - 1038159 + | factor essential for expression of methicillin resistance, FemB TERM 1283 1038222 - 1038189 - T 88 -9 -4.41237 | ATTAAAGAAGATAAA GCAATGTCGGATGA AAGTAA TCATACAACATTGC AATACCTGCGAATCA TERM 1284 1038259 - 1038303 + T 78 -9.5 -3.2756 | opp_overlap 1038264, overlap 1038264 GGAAGAGAGAATGAA AAAAAGATGCTTTTAAGGG AGATTTA CCCCTGAAAGCATCTTTTC TCTATTATTAAGATT TERM 1285 1038264 - 1038298 + T 100 -9.4 -4.73633 | opp_overlap 1038264, overlap 1038259 AGAGAATGAAAAAAA GATGCTTTTAAGGG AGATTTA CCCCTGAAAGCATC TTTTCTCTATTATTA TERM 1286 1038298 - 1038264 - T 100 -9.4 -5.69379 | opp_overlap 1038264 1038259 AGAGAATGAAAAAAA GATGCTTTTAAGGG AGATTTA CCCCTGAAAGCATC TTTTCTCTATTATTA Sca_1021 1038838 - 1038317 - | hypothetical protein TERM 1287 1040230 - 1040203 - R 85 -7.8 -4.79826 | opp_overlap 1040203 1040194 ATACACTATTAAAAA CACACCAGAT TCTCATAT ATCCGGTGTG TTTGCAGTATTATTC opp-2F 1040932 - 1040240 - | putative oligopeptide transporter ATPase domain Opp-2F opp-2D 1041710 - 1040925 - | putative oligopeptide transporter ATPase domain, Opp-2D opp-2C 1042518 - 1041703 - | putative oligopeptide transporter membrane permease domain, Opp-2c TERM 1288 1042216 - 1042230 + g 74 -2.8 -5.26316 | opp_overlap 1042216, overlap 1042217 GACACGCATAATAAT TGTATC AAT GATACC TTTTTTATACCCTGC opp-2B 1043468 - 1042515 - | putative oligopeptide transporter membrane permease domain, Opp-2B TERM 1289 1043005 - 1043017 + g 70 -3.3 -5.00616 | opp_overlap 1042994 1043005 1043006, overlap 1043006 TCAATGCCTGAAGAA GGCAG CAA CTGCA TTTTTTGAGAAAAGA Sca_1026 1043812 - 1043501 - | truncated putative extracellular solute-binding lipoprotein (fragment 2) Sca_1027 1044983 - 1043760 - | truncated putative extracellular solute-binding lipoprotein (fragment 1) Sca_1028 1045490 - 1045146 - | hypothetical protein TERM 1290 1045973 - 1045986 + G 78 -6.7 -4.70169 | opp_overlap 1045972 TCTTATGGAAAGATT GCAAG CAGA CTTGC TTTTGTTGAATCTGA Sca_1029 1045658 - 1047472 + | putative peptidase family M3 protein TERM 1291 1047532 - 1047479 - T 100 -27.2 -4.65969 | opp_overlap 1047483 1047490, overlap 1047483 1047490 AATAAATAACTAAAA TAAACAGAAAACCGGGATATCGCC ATAAAA GGTGATATCCCGGTTTTCTGTTTA AATGTAGGATTCGTA TERM 1292 1047528 - 1047483 - T 100 -23.6 -4.81843 | opp_overlap 1047483 1047490, overlap 1047479 1047490 AATAACTAAAATAAA CAGAAAACCGGGATATCGCC ATAAAA GGTGATATCCCGGTTTTCTG TTTAAATGTAGGATT TERM 1293 1047483 - 1047528 + T 100 -25.8 -3.71645 | opp_overlap 1047483 1047479 1047490, overlap 1047490 AATAACTAAAATAAA CAGAAAACCGGGATATCGCC ATAAAA GGTGATATCCCGGTTTTCTG TTTAAATGTAGGATT TERM 1294 1047490 - 1047521 + T 100 -16.7 -4.80455 | opp_overlap 1047490 1047483 1047479, overlap 1047483 AAAATAAACAGAAAA CCGGGATATCGCC ATAAAA GGTGATATCCCGG TTTTCTGTTTAAATG TERM 1295 1047521 - 1047490 - T 100 -14.5 -4.95487 | opp_overlap 1047483 1047490, overlap 1047483 1047479 AAAATAAACAGAAAA CCGGGATATCGCC ATAAAA GGTGATATCCCGG TTTTCTGTTTAAATG Sca_1030 1048177 - 1047530 - | putative phosphate uptake regulator protein (PhoU family) pstB 1049040 - 1048177 - | putative phosphate ABC transporter ATP-binding protein TERM 1296 1048536 - 1048554 + g 71 -5.2 -4.60924 | opp_overlap 1048536 1048539 TCAACTCATCCCAAA TTACAGCG CCG CGCAGTGA TTTTTCAACGATTTG pstA 1050020 - 1049091 - | putative phosphate ABC transporter permease protein Sca_1033 1050948 - 1050022 - | putative ABC transporter permease protein TERM 1297 1050730 - 1050744 + g 78 -8.6 -3.76224 | TTTCGGTGTTGATGA GAATGG ATT CCATTC TTTAGTGAATAAGAA TERM 1298 1051088 - 1051102 + r 75 -5.8 -4.7629 | TGCTGTGATTATTTA GTTAAA TCT TTTAAC TTTTTAAGTTGGTCA Sca_1034 1052016 - 1051081 - | putative phosphate transport system substrate-binding protein TERM 1299 1052415 - 1052397 - R 95 -6.7 -6.11229 | ATGAAAATAAAAAAA CTAGGGC TAAAC ACCCTAG TTAAACAATTATTGT Sca_1035 1053345 - 1052437 - | hypothetical protein Sca_1036 1053548 - 1055149 + | putative ABC transporter ATP-binding protein TERM 1300 1055187 - 1055167 - f 87 -8.3 -4.73388 | opp_overlap 1055167 AATTCTTATTAAAAA GGTTGGGAT AGA ATTCCAACC TTTTTTCTATGTTTT TERM 1301 1055167 - 1055187 + F 100 -10.5 -5.53079 | opp_overlap 1055167 AATTCTTATTAAAAA GGTTGGGAT AGA ATTCCAACC TTTTTTCTATGTTTT TERM 1302 1055623 - 1055597 - f 73 -9.5 -2.52775 | opp_overlap 1055599, overlap 1055596 1055594 1055603 TGTATATAAAACTAT GAGCAAGTTCG CATTC CGAACTTGCTT TTTTATATATGTGAT TERM 1303 1055599 - 1055621 + F 100 -12.1 -5.4492 | opp_overlap 1055597 1055596 1055594 1055603 TATATAAAACTATGA GCAAGTTCG CATTC CGAACTTGC TTTTTTATATATGTG lysC 1055671 - 1056873 + | putative aspartokinase II TERM 1304 1057017 - 1057007 - g 74 -4 -5.15167 | TAGTAGGAAGAAAAA TGTT GGA AACA GTAGATCGTAAAAAT TERM 1305 1057481 - 1057471 - g 78 -6.8 -4.64657 | TTAAATGGTGAAAAA GGTG AAG CACC TAAAGCTTACCCTCA asd 1056958 - 1057947 + | putative aspartate semialdehyde dehydrogenase dapA 1057950 - 1058834 + | putative dihydrodipicolinate synthase dapB 1058834 - 1059562 + | putative dihydrodipicolinate reductase dapD 1059585 - 1060304 + | putative tetrahydrodipicolinate acetyltransferase Sca_1042 1060421 - 1061578 + | putative peptidase (peptidase family M20/M25/M40) alr 1061581 - 1062657 + | putative alanine racemase lysA 1062659 - 1063921 + | putative diaminopimelate decarboxylase TERM 1306 1063966 - 1063934 - T 100 -14.4 -3.78902 | gap 1, opp_overlap 1063934, overlap 1063922 TAATGAATAGTTAAA CTGAGATAGCAG-GT TTTA ACACTGCTATCTCAG TTTTTTATTTATTGA TERM 1307 1063934 - 1063966 + T 100 -14.4 -5.80003 | gap 1, opp_overlap 1063934 1063922 TAATGAATAGTTAAA CTGAGATAGCAG-GT TTTA ACACTGCTATCTCAG TTTTTTATTTATTGA TERM 1308 1064019 - 1064039 + T 81 -8.4 -4.10161 | opp_overlap 1064019 ATAAAAATAAAAAAA CACTTTAC ACTGA GTAAAGTG TTTTAAGAAATAATC TERM 1309 1064039 - 1064019 - T 100 -8.4 -6.23317 | opp_overlap 1064019 ATAAAAATAAAAAAA CACTTTAC ACTGA GTAAAGTG TTTTAAGAAATAATC csp 1064274 - 1064074 - | putative cold shock protein Sca_1046 1064933 - 1064625 - | hypothetical protein Sca_1047 1065093 - 1065362 + | putative acylphosphatase Sca_1048 1065378 - 1065995 + | similar to XpaC protein TERM 1310 1066001 - 1065986 - f 80 -6.2 -4.92791 | TAGAATAGAACAAAA TCGTAA ATAA TTACGA AAGGAGAAACCTAAA TERM 1311 1066945 - 1066930 - g 73 -3.2 -5.08255 | ACTTTTAAAACAAAA TGCGGT GGAT ACAGCA GTAGAAAATGAACGT Sca_1049 1066016 - 1067143 + | putative toxic anion resistance (TelA) family protein TERM 1312 1067157 - 1067184 + F 95 -7.8 -5.61596 | opp_overlap 1067157 1067154 AAGCAATCATAATTA CGATTATCCCTA TAAT TAAGGATGATCG TTTTTTTATAGAGAT Sca_1050 1067272 - 1068192 + | hypothetical protein, similar to BmrU TERM 1313 1068228 - 1068194 - T 100 -12.3 -4.32951 | opp_overlap 1068199, overlap 1068199 ATGTTAATGAATAAA TAAAAGCTGGCCTTC GTCAA GAAAGCCAGCTTTTT TAAGTGATATAATTA TERM 1314 1068199 - 1068223 + T 100 -10 -5.11613 | opp_overlap 1068194 1068199 AATGAATAAATAAAA GCTGGCCTTC GTCAA GAAAGCCAGC TTTTTTAAGTGATAT TERM 1315 1068223 - 1068199 - T 100 -12.2 -5.13527 | opp_overlap 1068199, overlap 1068194 AATGAATAAATAAAA GCTGGCCTTC GTCAA GAAAGCCAGC TTTTTTAAGTGATAT brnQ 1069584 - 1068241 - | putative branched-chain amino acid carrier TERM 1316 1068894 - 1068905 + g 73 -5.8 -4.4448 | opp_overlap 1068893 1068894 CAGCGGCAATAACAC CAGC CATT GCTG TTTGTTTGAAAATTT Sca_1052 1071746 - 1069857 - | hypothetical protein TERM 1317 1070107 - 1070090 - G 74 -9.9 -2.74188 | overlap 1070089 1070092 GATCATAATTATAAG CAGATGG TTCG CCATCTG AAAAGATAATTAAGA TERM 1318 1070467 - 1070482 + g 71 -4.8 -4.71186 | overlap 1070474 GAACGACTTAAATCT TGTTTT TTAT AAAACA TTTTATATTGGTCGT Sca_1053 1072550 - 1071759 - | hypothetical protein Sca_1054 1072847 - 1072641 - | hypothetical protein Sca_1055 1073689 - 1072874 - | hypothetical protein TERM 1319 1072931 - 1072943 + g 79 -4.9 -5.17488 | overlap 1072936 TTCTGTGATTCTAAG TGATT CTG AATCA TTTTGTTTTAGTGTT Sca_1056 1073859 - 1074038 + | hypothetical protein TERM 1320 1074044 - 1074082 + T 100 -12.7 -4.14392 | opp_overlap 1074047 1074052, overlap 1074052 CGTTATGTGACAAAA TATTAAAACAGCGACAA TTGTT TTGTCGCTGTTTTTGTA TTTTAAAAATTGAAA TERM 1321 1074079 - 1074047 - T 100 -12.2 -2.88044 | opp_overlap 1074044 1074052, overlap 1074052 TATGTGACAAAATAT TAAAACAGCGACAA TTGTT TTGTCGCTGTTTTT GTATTTTAAAAATTG TERM 1322 1074074 - 1074052 - T 100 -12.1 -4.58236 | opp_overlap 1074044 1074052, overlap 1074047 GACAAAATATTAAAA CAGCGACAA TTGTT TTGTCGCTG TTTTTGTATTTTAAA TERM 1323 1074052 - 1074074 + T 100 -12.1 -5.28983 | opp_overlap 1074052 1074047, overlap 1074044 GACAAAATATTAAAA CAGCGACAA TTGTT TTGTCGCTG TTTTTGTATTTTAAA TERM 1324 1074274 - 1074250 - T 100 -12.2 -5.63103 | opp_overlap 1074246 1074244 1074250 TTTTAATTAAAAAAA TGCGACAGCT ATAAA AGCCGTCGCA TTAATGTTTATAACA TERM 1325 1074250 - 1074274 + T 81 -10 -3.50335 | opp_overlap 1074250, overlap 1074246 1074244 TTTTAATTAAAAAAA TGCGACAGCT ATAAA AGCCGTCGCA TTAATGTTTATAACA odhB 1075583 - 1074306 - | dihydrolipoamide succinyltransferase TERM 1326 1074937 - 1074956 + g 86 -6.6 -5.11613 | GTAAGCATTGCAGTG TTATTAGA TACT TCTAATAA TTTTTTAGCTGCTGT TERM 1327 1075300 - 1075310 + g 88 -5.4 -5.47159 | opp_overlap 1075288 1075300, overlap 1075289 GTATCTTCTTTAGAA GAAG TGT CTTC TTTTTTATCTTCAGA odhA 1078390 - 1075595 - | putatative 2-oxoglutarate dehydrogenase E1 component TERM 1328 1075751 - 1075763 + g 78 -7.7 -4.24726 | opp_overlap 1075751 TGGATATACAAATGA CCAAG CAC CTTGG TTTTGCGGTTCTTCT TERM 1329 1078279 - 1078293 + g 71 -8.6 -3.21993 | opp_overlap 1078278 1078279 ATAAAATTTGTAAAT CTTCAG AGA CTGAAG TTGGATCTTGTAGAT TERM 1330 1078506 - 1078489 - R 100 -11.3 -5.07275 | opp_overlap 1078489 TGACACATAGAAAAA GAGCCGT AATG ACGGCTC TTTATAAACATTTAT TERM 1331 1078489 - 1078506 + r 100 -11.3 -3.91473 | opp_overlap 1078489 TGACACATAGAAAAA GAGCCGT AATG ACGGCTC TTTATAAACATTTAT Sca_1059 1079951 - 1078587 - | putative sensor protein histidine kinase Sca_1060 1080610 - 1079948 - | putative response regulator protein TERM 1332 1080912 - 1080939 + r 100 -10 -5.63103 | AACGTGACATACTTA CCGATTTTGC TAGTAAAT GCAAAATCGG TTTTTTTGATTAAGA TERM 1333 1080960 - 1081001 + r 100 -12.5 -4.49353 | opp_overlap 1080960 TTGATTAAGAAAAAA GCATTCATGATGTTTTCTC ATTT GAGAATTTATCATGAATGC TTTCTTATATTCTAA TERM 1334 1081001 - 1080960 - R 100 -10.3 -5.5112 | opp_overlap 1080960 TTGATTAAGAAAAAA GCATTCATGATGTTTTCTC ATTT GAGAATTTATCATGAATGC TTTCTTATATTCTAA Sca_1061 1081640 - 1081017 - | putative membrane integrated acid phosphatase family protein murG 1082729 - 1081641 - | putative undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase Sca_1063 1083253 - 1082741 - | putative acetyltransferase Sca_1064 1084736 - 1083267 - | putative protease TERM 1335 1084880 - 1084857 - R 100 -10.4 -5.24416 | opp_overlap 1084857 TAAGCACAATAAAAA GGATTGATGC ACGA ACATCAATCC TTTTTAAACGTATTA TERM 1336 1084857 - 1084880 + r 100 -9.7 -4.62302 | opp_overlap 1084857 TAAGCACAATAAAAA GGATTGATG CACGAA CATCAATCC TTTTTAAACGTATTA Sca_1065 1085114 - 1084893 - | hypothetical protein crr 1085614 - 1085114 - | PTS system, glucose-specific IIA component Sca_1067 1086057 - 1085617 - | putative peptide methionine sulfoxide reductase Sca_1068 1086577 - 1086050 - | putative peptide methionine sulfoxide reductase TERM 1337 1086542 - 1086522 - G 74 -8.3 -3.80174 | ATACCTGGATAAGAA GTGAATGGT TTT ACCATACAC CAGAAACAGCCACCG Sca_1069 1087512 - 1086676 - | hypothetical protein dfrA 1088007 - 1087525 - | dihydrofolate reductase thyA 1089004 - 1088051 - | thymidylate synthase TERM 1338 1089044 - 1089076 + r 86 -10 -3.77219 | opp_overlap 1089044 ATCTTTATAGAAAAA GGGACAAATGATGT TCTGT AAGTCATTTGTCCC TTTCCATTACATGGT TERM 1339 1089076 - 1089044 - R 88 -7.9 -4.9725 | opp_overlap 1089044 ATCTTTATAGAAAAA GGGACAAATGA TGTTCTGTAAG TCATTTGTCCC TTTCCATTACATGGT Sca_1072 1089540 - 1089106 - | hypothetical protein Sca_1073 1090743 - 1089625 - | hypothetical protein Sca_1074 1091158 - 1091865 + | hypothetical protein Sca_1075 1091910 - 1092302 + | conserved hypothetical protein with RNase H domain TERM 1340 1092304 - 1092344 + T 100 -21.6 -5.46706 | opp_overlap 1092304 AACAATTAAAATAAA CAGGATTGAACAAAATGT CTATT ACATTTTGTTCAATCCTG TTTTTATTTTAGAAT TERM 1341 1092344 - 1092304 - T 100 -21.6 -4.81843 | opp_overlap 1092304 AACAATTAAAATAAA CAGGATTGAACAAAATGT CTATT ACATTTTGTTCAATCCTG TTTTTATTTTAGAAT Sca_1076 1093240 - 1092353 - | putative 5'-3' exonuclease Sca_1077 1096707 - 1093261 - | hypothetical protein TERM 1342 1096847 - 1096804 - R 84 -7 -5.19819 | gap 1, opp_overlap 1096804 AAACAAAATCAAAAA GACACTTAATTTCCCATCA TCAAAAC TGATGAGAT-TTAAGTGTC TTTAAATGCATTATG Sca_1078 1097754 - 1096858 - | hypothetical protein Sca_1079 1098904 - 1097780 - | putative RNA methylase TERM 1343 1098660 - 1098674 + g 85 -2.8 -5.80003 | opp_overlap 1098662, overlap 1098662 TCTACAGGGATAATT GATTCC CAA GGAATA TTTTTTGTTTGTTCA TERM 1344 1098662 - 1098672 + g 70 -5.4 -4.51345 | opp_overlap 1098662, overlap 1098660 TACAGGGATAATTGA TTCC CAA GGAA TATTTTTTGTTTGTT TERM 1345 1099026 - 1099007 - R 100 -9.3 -5.41359 | opp_overlap 1098983 AAGCAAATTAAAAAA GCTCTCC TTCGCG GGAGAGC TAAACTAGTAATGAT Sca_1080 1099850 - 1099521 - | hypothetical protein Sca_1081 1100429 - 1099863 - | conserved hyothetical protein Sca_1082 1100763 - 1100422 - | hypothetical protein TERM 1346 1100682 - 1100697 + g 71 -4.6 -4.84274 | TATGAAATGAATATT GAACGC CCTC GCGTGC TTTTTGATATCGTTC recU 1101024 - 1101650 + | putative recombination protein U TERM 1347 1101692 - 1101662 - g 89 -7.6 -4.9138 | overlap 1101663 ATGACGGAAAGAAAA GGGACTTCCAATTC TAA GAATGGAAAGTCCG GTAAAAAACAGAATA TERM 1348 1101691 - 1101663 - g 84 -11.1 -3.53744 | overlap 1101662 TGACGGAAAGAAAAG GGACTTCCAATTC TAA GAATGGAAAGTCC GGTAAAAAACAGAAT pbp2 1101647 - 1103917 + | penicillin-binding protein 2 TERM 1349 1103959 - 1103925 - T 100 -12.4 -5.58179 | gap 1, opp_overlap 1103925 CATCATAATAAAAAA GTGCAGTCGCTAGAA TTAATT TTCTAGC-ACTGCAC TTTTTATTGTTTTTT TERM 1350 1103925 - 1103959 + T 100 -12.4 -5.54403 | gap 1, opp_overlap 1103925 CATCATAATAAAAAA GTGCAGTCGCTAGAA TTAATT TTCTAGC-ACTGCAC TTTTTATTGTTTTTT Sca_1085 1104295 - 1103963 - | hypothetical protein TERM 1351 1104202 - 1104230 + g 81 -2.5 -5.75538 | TAAAATATGCATCAA GCTGACTTT TTCCTTCTTGT GAAGTCAGC TTTTTATTTTTTGAG nth 1104979 - 1104308 - | putative endonuclease III dnaD 1105657 - 1104980 - | DNA replication protein DnaD TERM 1352 1105725 - 1105684 - R 81 -8.1 -4.13767 | opp_overlap 1105683 1105678 1105684 CTTTCTATTTGAAAA GGCCCAGTCGAATGAAT GGAAGAAG AATCATTTGACTGGACC ATTATATATTTTCTA asnS 1107047 - 1105755 - | putative asparaginyl-tRNA synthetase TERM 1353 1106643 - 1106653 + g 70 -5.4 -4.45945 | TGTTGCACGAATGAT TTCG TTA CGAA TTTTCATTACTGCAT Sca_1089 1109892 - 1107205 - | hypothetical protein birA 1110879 - 1109908 - | putative bifunctional protein [includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase pap 1112068 - 1110866 - | putative poly(A) polymerase Sca_1092 1113192 - 1112071 - | putative glycosyltransferase Sca_1093 1113538 - 1113221 - | putative pyrophosphatase (MazG family) TERM 1354 1113645 - 1113624 - R 100 -10.9 -5.60689 | opp_overlap 1113624 TTAGACAATAAAAAA CCTTGCCGA ATAG TCGACAAGG TTCAATTATATTAAC TERM 1355 1113624 - 1113645 + r 74 -8.7 -3.29147 | opp_overlap 1113624 TTAGACAATAAAAAA CCTTGCCGA ATAG TCGACAAGG TTCAATTATATTAAC Sca_1094 1114363 - 1113665 - | putative membrane protein with neutral zinc metallopeptidase domain Sca_1095 1115004 - 1114390 - | hypothetical protein TERM 1356 1114984 - 1114956 - G 89 -7.5 -4.94058 | overlap 1114960 CTAATGCAAACAAAA GAAATGGACGA GAATAAA TCGCCCATCTC CACCAATTTGTTAAT TERM 1357 1114980 - 1114960 - G 76 -4.7 -4.96996 | overlap 1114956 TGCAAACAAAAGAAA TGGACGA GAATAAA TCGCCCA TCTCCACCAATTTGT Sca_1096 1115566 - 1115009 - | hypothetical protein Sca_1097 1116832 - 1115585 - | hypothetical protein aroA 1118135 - 1116837 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1358 1117043 - 1117030 - G 72 -3.7 -4.89477 | opp_overlap 1117034 GGGTGAATAATAAAA CCGTC ATCG GTCGG ATGTACTTCAAAACC aroB 1119221 - 1118145 - | putative 3-dehydroquinate synthase aroC 1120403 - 1119237 - | chorismate synthase TERM 1359 1120554 - 1120590 + r 100 -17 -3.65902 | opp_overlap 1120554, overlap 1120558 AGTTAAGTGAAAAAA TAAACCAGATTGAAAT AAAAA ATTTCAATCTGGTTTA TTTGGATAAAATGAA TERM 1360 1120590 - 1120554 - R 100 -17 -5.16572 | opp_overlap 1120554 1120558 AGTTAAGTGAAAAAA TAAACCAGATTGAAAT AAAAA ATTTCAATCTGGTTTA TTTGGATAAAATGAA TERM 1361 1120558 - 1120586 + r 100 -13.4 -4.46112 | opp_overlap 1120554, overlap 1120554 AAGTGAAAAAATAAA CCAGATTGAAAT AAAAA ATTTCAATCTGG TTTATTTGGATAAAA ndk 1121079 - 1120627 - | nucleoside diphosphate kinase gerCC 1122141 - 1121185 - | putative heptaprenyl diphosphate synthase component II TERM 1362 1121300 - 1121328 + g 78 -6.7 -4.614 | TATTGTTTACTTATT TCTTTTGACTGCA TTA TGCTGTCTGAAGA TTTTATATAGTTAAC gerCB 1122868 - 1122143 - | menaquinone biosynthesis methyltransferase Sca_1104 1123442 - 1122870 - | hypothetical protein TERM 1363 1123642 - 1123619 - R 100 -11.8 -5.19879 | opp_overlap 1123619 1123624, overlap 1123624 TTTTAAAGATAAAAA GAAAAGCCCC GATG AGGGCTTTTC TTCTAAGTATTTATT TERM 1364 1123619 - 1123642 + r 87 -11.1 -3.46874 | opp_overlap 1123619 1123624, overlap 1123624 TTTTAAAGATAAAAA GAAAAGCCC CGATGA GGGCTTTTC TTCTAAGTATTTATT TERM 1365 1123637 - 1123624 - R 85 -5.9 -5.40873 | opp_overlap 1123624 1123619, overlap 1123619 AAGATAAAAAGAAAA GCCCC GATG AGGGC TTTTCTTCTAAGTAT TERM 1366 1123624 - 1123637 + r 72 -5.2 -4.79955 | opp_overlap 1123619 1123624, overlap 1123619 AAGATAAAAAGAAAA GCCC CGATGA GGGC TTTTCTTCTAAGTAT hup 1123933 - 1123661 - | DNA-binding protein HU gpsA 1125102 - 1124104 - | putative glycerol-3-phosphate dehydrogenase Sca_1107 1126441 - 1125131 - | putative GTP-binding protein TERM 1367 1125306 - 1125296 - G 70 -5.4 -4.36914 | opp_overlap 1125296 TTGTGTTGCATAAAA GACT TTA AGTC TTCTGCCCTTATCTG TERM 1368 1126573 - 1126525 - R 100 -9.1 -5.38497 | gap 2, opp_overlap 1126524 ATTGAAATCAAAAAA GCCAAGGCTG-AGAC-GTGCACA ATAAA TATACACTGTCTACAGTCTTGGC ATGATTTAATAAGTC TERM 1369 1126592 - 1126606 + r 85 -5.8 -5.4387 | opp_overlap 1126592 ATTTAATAAGTCAAA TCTTAA AAT TTAAGA TTTTTTAATTTGTCT Sca_1108 1127772 - 1126594 - | putative 30S ribosomal protein S1 TERM 1370 1127905 - 1127918 + r 70 -5.3 -4.53047 | AATATATTTGGATGA TGTAC CCGT GTACA TTTATTCTCTTTACT cmk 1128654 - 1127992 - | putative cytidylate kinase TERM 1371 1129050 - 1129039 - g 73 -2.2 -5.30348 | ATTTAACAACAAAAA CAGA GAAA CCTG TTGTAATTACTGGTG TERM 1372 1129327 - 1129279 - g 79 -7 -4.45544 | gap 1, opp_overlap 1129290, overlap 1129282 1129283 1129284 GTGTATTAACTAAAA CAAGCGTACAATTTCATCACCGT CCTT ACGGCCATGAAATTGTACA-TCA AGTGGATTCAGAGTT TERM 1373 1129325 - 1129282 - g 90 -11.2 -4.34008 | opp_overlap 1129290, overlap 1129279 1129283 1129284 TATTAACTAAAACAA GCGTACAATTTCATCACCGT CCTT ACGGCCATGAAATTGTACAT CAAGTGGATTCAGAG TERM 1374 1129324 - 1129283 - g 100 -14.7 -3.19321 | opp_overlap 1129290, overlap 1129282 1129279 1129284 ATTAACTAAAACAAG CGTACAATTTCATCACCGT CCTT ACGGCCATGAAATTGTACA TCAAGTGGATTCAGA TERM 1375 1129323 - 1129284 - g 100 -16 -2.50508 | opp_overlap 1129290, overlap 1129283 1129282 1129279 TTAACTAAAACAAGC GTACAATTTCATCACCGT CCTT ACGGCCATGAAATTGTAC ATCAAGTGGATTCAG Sca_1110 1128732 - 1129706 + | putative L-asparaginase TERM 1376 1129711 - 1129746 + T 100 -13.5 -5.09521 | opp_overlap 1129711 CGCAGGTTTAAAAAA GCAGTTACCAGATGA AATGAA TTGTCTGGTAACTGC TTTTTGGTTTATTAA TERM 1377 1129746 - 1129711 - T 100 -9.2 -5.03314 | opp_overlap 1129711 CGCAGGTTTAAAAAA GCAGTTACCAGA TGAAATGAATTG TCTGGTAACTGC TTTTTGGTTTATTAA Sca_1111 1130748 - 1129762 - | putative pyridine nucleotide-disulfide reductase TERM 1378 1130233 - 1130251 + g 76 -4.5 -5.16237 | overlap 1130235 CTTTTCTAATTCAAG CGCTGCA TCAAC TGCAGAG TTTTTTCCTCCGATT TERM 1379 1130881 - 1130850 - R 100 -14.7 -5.35224 | opp_overlap 1130850 GTTACAAAAAGAAAA CTCTGCAATGAAA TGTAGT TTTCATTGCAGAG TATCTAAATATTATT TERM 1380 1130850 - 1130881 + r 100 -14.7 -2.96296 | opp_overlap 1130850 GTTACAAAAAGAAAA CTCTGCAATGAAA TGTAGT TTTCATTGCAGAG TATCTAAATATTATT Sca_1112 1132535 - 1130892 - | putative elastin binding protein TERM 1381 1131094 - 1131108 + g 72 -3.6 -4.90918 | TGATTTTGGTTATTT TGATTA TAT TGATCA TTTTGTTGATTTTGT TERM 1382 1131619 - 1131647 + g 86 -10.1 -4.18763 | opp_overlap 1131600 1131598 CTAGCAGCTCCAGCA GCACCTGCTGCGG TAC CCGCAGCTGCAGC TTTTCCGGATTTATT TERM 1383 1131774 - 1131803 + g 100 -7.2 -5.61913 | gap 1, overlap 1131773 1131756 TATTGCTGCAGCACC CGCAGCAGCGGCT TTACC AGCC-TTGCTGTG TTTTTTGTCTTTATT TERM 1384 1132009 - 1132028 + g 73 -3.4 -5.15381 | overlap 1132007 CCGCCTACTATTCCT GCTGCTCC TGCA GCTGCAGC TTTTTTGCCTGTATT Sca_1113 1134215 - 1132833 - | putative ATP-dependent DNA helicase TERM 1385 1133053 - 1133071 + g 76 -3.2 -5.25805 | CCTTCTTTTTTACGA TATTCTGA ACG TTGGAATA TTTTTTGGATTTCTT Sca_1114 1135171 - 1134218 - | hypothetical protein Sca_1115 1135279 - 1135527 + | ferredoxin TERM 1386 1135611 - 1135586 - T 74 -3.3 -5.49234 | opp_overlap 1135586, overlap 1135579 1135574 1135588 AGATTGAATAAAAAA GGTCAAAGCAA ATGA TTGTTTTGATC TTTCTTTATTAAAAG TERM 1387 1135586 - 1135611 + T 83 -7.7 -4.67607 | opp_overlap 1135586 1135579 1135574 1135588 AGATTGAATAAAAAA GGTCAAAGCAA ATGA TTGTTTTGATC TTTCTTTATTAAAAG TERM 1388 1135618 - 1135663 + T 100 -14.5 -3.2827 | gap 1, opp_overlap 1135579 1135574 1135626, overlap 1135619 1135620 1135626 GTTTTGATCTTTCTT TA-TTAAAAGCCCGGAAATT ATTTTCA AATTTCCGGGCTTTTAAATA TTAATAATTCAATGC TERM 1389 1135619 - 1135661 + T 100 -15.2 -3.20494 | opp_overlap 1135574 1135626, overlap 1135618 1135620 1135626 TTTTGATCTTTCTTT ATTAAAAGCCCGGAAATT ATTTTCA AATTTCCGGGCTTTTAAA TATTAATAATTCAAT TERM 1390 1135620 - 1135660 + T 100 -18.7 -2.51815 | opp_overlap 1135574 1135626, overlap 1135619 1135618 1135626 TTTGATCTTTCTTTA TTAAAAGCCCGGAAATT ATTTTCA AATTTCCGGGCTTTTAA ATATTAATAATTCAA TERM 1391 1135626 - 1135654 + T 100 -13.3 -4.29325 | opp_overlap 1135626, overlap 1135620 1135619 1135618 CTTTCTTTATTAAAA GCCCGGAAATT ATTTTCA AATTTCCGGGC TTTTAAATATTAATA TERM 1392 1135654 - 1135626 - T 100 -13.3 -4.25104 | opp_overlap 1135626 1135620 1135619 1135618 CTTTCTTTATTAAAA GCCCGGAAATT ATTTTCA AATTTCCGGGC TTTTAAATATTAATA Sca_1116 1136212 - 1135664 - | hypothetical protein srrB 1138236 - 1136482 - | staphylococcal respiratory response protein SrrB TERM 1393 1137151 - 1137162 + g 73 -2.2 -5.40004 | TTCGTGTGATACATT GGCT ATAA AGTC TTTTTTCATTTGATC TERM 1394 1137297 - 1137309 + g 74 -2.7 -5.31519 | TTACTTCATAATCTT GGAAT TGA ATTTC TTTTTCTTTAAATGT TERM 1395 1138209 - 1138164 - G 83 -8.7 -4.2828 | gap 1, opp_overlap 1138170, overlap 1138165 1138170 CCGCACTTAGTAAAA TTAAAACTGTCGTT-ACTATAA GAA TTATAGTTAACCACAGTTTTAT CACGACACTATTGAG TERM 1396 1138208 - 1138165 - G 87 -12.2 -3.16647 | gap 1, opp_overlap 1138170, overlap 1138164 1138170 CGCACTTAGTAAAAT TAAAACTGTCGTT-ACTATAA GAA TTATAGTTAACCACAGTTTTA TCACGACACTATTGA TERM 1397 1138203 - 1138170 - G 84 -7.7 -4.70319 | gap 1, opp_overlap 1138170, overlap 1138165 1138164 TTAGTAAAATTAAAA CTGTCGTT-ACTATAA GAA TTATAGTTAACCACAG TTTTATCACGACACT TERM 1398 1138170 - 1138203 + g 82 -7.7 -4.37092 | gap 1, opp_overlap 1138170 1138165 1138164 TTAGTAAAATTAAAA CTGTCGTT-ACTATAA GAA TTATAGTTAACCACAG TTTTATCACGACACT srrA 1138939 - 1138217 - | staphylococcal respiratory response regulator receiver SrrA rluB 1139991 - 1139254 - | ribosomal large subunit pseudouridine synthase B scpB 1140532 - 1139984 - | putative segregation and condensation protein B scpA 1141253 - 1140516 - | putative segregation and condensation protein A Sca_1122 1141350 - 1141853 + | hypothetical protein TERM 1399 1141891 - 1141845 - T 100 -17.8 -3.88464 | opp_overlap 1141845 1141851, overlap 1141837 1141851 TTAAAAAGACGTAAA TTAAAATAATGCACATCCAC ATATCGA ATGGATGTGCATTATTTTAA TTAGTCAGGCTCTTG TERM 1400 1141845 - 1141891 + T 100 -17.1 -3.16668 | opp_overlap 1141837 1141845 1141851, overlap 1141851 TTAAAAAGACGTAAA TTAAAATAATGCACATCCA CATATCGAA TGGATGTGCATTATTTTAA TTAGTCAGGCTCTTG TERM 1401 1141851 - 1141885 + T 100 -11.7 -4.45544 | opp_overlap 1141837 1141845 1141851, overlap 1141845 AGACGTAAATTAAAA TAATGCACATCCA CATATCGAA TGGATGTGCATTA TTTTAATTAGTCAGG TERM 1402 1141885 - 1141851 - T 100 -12.4 -4.57516 | opp_overlap 1141851 1141845, overlap 1141837 1141845 AGACGTAAATTAAAA TAATGCACATCCAC ATATCGA ATGGATGTGCATTA TTTTAATTAGTCAGG xerD 1142795 - 1141896 - | putative site-specific recombinase XerD fur 1143270 - 1142818 - | iron uptake regulatory protein nudF 1143918 - 1143376 - | putative ADP-ribose pyrophosphatase Sca_1126 1144004 - 1144912 + | hypothetical protein TERM 1403 1144942 - 1144924 - T 86 -7.5 -5.055 | opp_overlap 1144924 TTAAGTTTTAAAAAA GAATGAC GTGAT GTCATTC TTTTTTATTGTTAAA TERM 1404 1144924 - 1144942 + T 95 -8.2 -5.64873 | opp_overlap 1144924 TTAAGTTTTAAAAAA GAATGACG TGA TGTCATTC TTTTTTATTGTTAAA Sca_1127 1145704 - 1144937 - | putative short chain dehydrogenase TERM 1405 1145474 - 1145491 + g 81 -2.7 -5.64274 | TAACCCGTCAATTGC CTCTTTT TTAA AACAGAG TTTTTTTATAGCTGC TERM 1406 1146348 - 1146336 - g 72 -7.7 -3.6849 | opp_overlap 1146328 ATGGAAGTGCAAGAA GATGC ATT GCATC AAGTGACAGCGATAA Sca_1128 1145853 - 1146662 + | putative pyrroline-5-carboxylate reductase TERM 1407 1146663 - 1146716 + T 100 -14.4 -3.56643 | gap 1, opp_overlap 1146670, overlap 1146668 1146670 1146679 TCCAATAAACAATAA TAT-AAAACTACCGAAACAGGATTT TTAAC AAATTCTGTTTCGGTAGTATTCATA TTTCAAAAGTATCAA TERM 1408 1146668 - 1146710 + T 100 -15.9 -3.45571 | opp_overlap 1146670, overlap 1146663 1146670 1146679 TAAACAATAATATAA AACTACCGAAACAGGATTT TTAAC AAATTCTGTTTCGGTAGTA TTCATATTTCAAAAG TERM 1409 1146670 - 1146708 + T 100 -18.5 -3.29837 | opp_overlap 1146670, overlap 1146668 1146663 1146679 AACAATAATATAAAA CTACCGAAACAGGATTT TTAAC AAATTCTGTTTCGGTAG TATTCATATTTCAAA TERM 1410 1146708 - 1146670 - T 100 -16.3 -4.83518 | opp_overlap 1146668 1146663 1146670 1146679 AACAATAATATAAAA CTACCGAAACAGGATTT TTAAC AAATTCTGTTTCGGTAG TATTCATATTTCAAA rnz 1147632 - 1146712 - | putative ribonuclease Z zwf 1147774 - 1149258 + | putative glucose-6-phosphate 1-dehydrogenase TERM 1411 1149332 - 1149285 - f 91 -10.8 -3.77087 | opp_overlap 1149289, overlap 1149287 1149289 TAGTGAATAGTTAAA TATATAGACAAGTCTGTACTTA AATT TAAGTTCAGACTTGTCTATTCT TTAGCCCTTTTTTAA TERM 1412 1149330 - 1149287 - f 100 -15.6 -3.4647 | opp_overlap 1149289, overlap 1149285 1149289 GTGAATAGTTAAATA TATAGACAAGTCTGTACTTA AATT TAAGTTCAGACTTGTCTATT CTTTAGCCCTTTTTT TERM 1413 1149289 - 1149328 + F 100 -18.2 -3.95674 | opp_overlap 1149289 1149287 1149285 GAATAGTTAAATATA TAGACAAGTCTGTACTTA AATT TAAGTTCAGACTTGTCTA TTCTTTAGCCCTTTT TERM 1414 1149328 - 1149289 - f 100 -18.2 -3.29937 | opp_overlap 1149289, overlap 1149287 1149285 GAATAGTTAAATATA TAGACAAGTCTGTACTTA AATT TAAGTTCAGACTTGTCTA TTCTTTAGCCCTTTT Sca_1131 1149419 - 1150282 + | putative AraC-type transcription regulator TERM 1415 1150280 - 1150328 + T 100 -17.8 -3.10869 | opp_overlap 1150287, overlap 1150287 1150291 GATGTTAACAATGAG TAAAAAAGAAAGGCACGATTGA TAATT TCAACCGTGCCTTTCTTTATTA TATATAATTATTTTT TERM 1416 1150287 - 1150321 + T 100 -15.9 -4.43576 | opp_overlap 1150287, overlap 1150280 1150291 ACAATGAGTAAAAAA GAAAGGCACGATTGA TAATT TCAACCGTGCCTTTC TTTATTATATATAAT TERM 1417 1150321 - 1150287 - T 100 -18.1 -5.22794 | opp_overlap 1150287 1150280 1150291 ACAATGAGTAAAAAA GAAAGGCACGATTGA TAATT TCAACCGTGCCTTTC TTTATTATATATAAT TERM 1418 1150291 - 1150317 + T 100 -10.9 -4.76087 | opp_overlap 1150287, overlap 1150287 1150280 TGAGTAAAAAAGAAA GGCACGATTGA TAATT TCAACCGTGCC TTTCTTTATTATATA gnd 1151745 - 1150336 - | 6-phosphogluconate dehydrogenase Sca_1133 1152953 - 1151820 - | putative peptidase TERM 1419 1152439 - 1152425 - G 81 -8.6 -4.07885 | TAGGTGCTCCTAAAA CAGTTG TAC CAACTG GAGAACTTGCATCTA Sca_1134 1153015 - 1153242 + | hypothetical protein TERM 1420 1153259 - 1153302 + T 100 -19.2 -5.09225 | opp_overlap 1153263, overlap 1153263 TATGTTAATCTAAAC AGAACCCGCACAGATATATT AAAA AATATATCTGTGCGGGTTTA TTTTTTAACTACACT TERM 1421 1153298 - 1153263 - T 100 -22.2 -3.86372 | opp_overlap 1153259 1153263 TTAATCTAAACAGAA CCCGCACAGATATATT AAAA AATATATCTGTGCGGG TTTATTTTTTAACTA TERM 1422 1153263 - 1153298 + T 100 -22.2 -5.0666 | opp_overlap 1153263, overlap 1153259 TTAATCTAAACAGAA CCCGCACAGATATATT AAAA AATATATCTGTGCGGG TTTATTTTTTAACTA Sca_1135 1154288 - 1153311 - | hypothetical protein Sca_1136 1154738 - 1154301 - | hypothetical protein bmfBB 1156131 - 1154836 - | putative dihydrolipoamide branched chain transacylase (E2) bfmBAB 1157133 - 1156150 - | branched-chain alpha-keto acid dehydrogenase E1 component beta chain TERM 1423 1156298 - 1156314 + g 72 -9.5 -2.7185 | opp_overlap 1156296 1156295 TCAAACAAACAATTT TCAGCTA TTA TAGCTGA TACTTCCGACATGAT bfmBAA 1158125 - 1157133 - | putative branched-chain alpha-keto acid dehydrogenase E1 component alpha chain TERM 1424 1157194 - 1157207 + g 70 -6.7 -4.10085 | opp_overlap 1157194 GGATCTGGATAAGGA GAAGC TTCA GCTTC TTTCGTTGCTTTTTG TERM 1425 1157677 - 1157702 + g 74 -2.5 -5.30686 | TTTGAAGTGCCTTCT CCTAAAGTAGC CATT GCAATATTAGG TTTTTTATCCATCTT bfmBC 1159568 - 1158144 - | putative E3 component of branched-chain alpha-keto acid dehydrogenase complex TERM 1426 1158643 - 1158657 + g 71 -5 -4.62054 | opp_overlap 1158637, overlap 1158637 1158639 GCAAAAATATGCTGT TCAGCA GTT TGTTGA TTTTCATTTACTTCA buk 1160637 - 1159579 - | butyrate kinase (branched-chain carboxylic acid kinase) TERM 1427 1160828 - 1160801 - R 90 -7.1 -5.4505 | opp_overlap 1160802, overlap 1160802 TTTTCCAATAAAAAA GGTTCTTCTTC TAAAGT GAAGAAGAACT TATAAAAGTATTAAG TERM 1428 1160802 - 1160827 + r 83 -10.6 -3.33315 | opp_overlap 1160802 1160801 TTTCCAATAAAAAAG GTTCTTCTTC TAAAGT GAAGAAGAAC TTATAAAAGTATTAA TERM 1429 1160827 - 1160802 - R 89 -10.6 -3.86307 | opp_overlap 1160802, overlap 1160801 TTTCCAATAAAAAAG GTTCTTCTTC TAAAGT GAAGAAGAAC TTATAAAAGTATTAA Sca_1142 1161734 - 1160844 - | putative phosphate butyryltransferase TERM 1430 1161451 - 1161413 - G 86 -9.9 -4.09864 | overlap 1161418 ATTTATGTTGCAAAA TGAAAGATAATATTTCT GCTGA AGAAACATTACCCTTCA TTAACACATCTATAC recN 1163440 - 1161761 - | similar to DNA repair protein RecN argR 1163907 - 1163455 - | arginine repressor ArgR TERM 1431 1163598 - 1163612 + g 83 -7.2 -4.72986 | CACCAATGGATTGAG CATTAC CTG GTAATG TTTTTAATACAAGTA TERM 1432 1163855 - 1163876 + g 74 -3.7 -5.07275 | overlap 1163844 1163861 TGTGTTTCAACTTGT TCAGTGGAA ATTA TTTCTCTGA TTTTTATATGTCTAA Sca_1145 1165027 - 1164149 - | geranyltranstransferase TERM 1433 1164186 - 1164211 + g 81 -2.6 -5.68023 | AATTTAGTTAAATCT TCTAGTTGTG TTGTAT CATAACCAGA TTTTTTTAGTTGTGC TERM 1434 1164904 - 1164942 + g 73 -6 -4.37211 | opp_overlap 1164900 TTAATAATAATGGTC GTATACGTTTTCCTCCTG CTT CAAGAGAATAACGCATAC TTTCTTCTAAATTTG Sca_1146 1165241 - 1165020 - | putative exonuclease VII small subunit Sca_1147 1166574 - 1165234 - | putative exonuclease VII, large subunit TERM 1435 1166198 - 1166226 + g 77 -2.5 -5.43866 | overlap 1166201 TCCTTTTTGTGTTTA GTATCAAAAAGAC CTT GTTTTTTTAATTC TTTTTTTAACGCTTC nusB 1166979 - 1166593 - | putative N utilization substance protein NusB Sca_1149 1167371 - 1167000 - | hypothetical protein accC 1168745 - 1167393 - | biotin carboxylase (subunit of acetyl-CoA carboxylase) accB 1169218 - 1168748 - | putative acetyl-CoA carboxylase biotin carboxyl carrier subunit TERM 1436 1168967 - 1168949 - G 79 -7.4 -4.42386 | opp_overlap 1168941 1168949 TGGTGATTTATAAAA CGTTCCAA CCA TTGGAGCG TTAATAGTTTTACCA TERM 1437 1168949 - 1168967 + g 76 -9.6 -3.37533 | opp_overlap 1168949, overlap 1168941 TGGTGATTTATAAAA CGTTCCAA CCA TTGGAGCG TTAATAGTTTTACCA efp 1170025 - 1169468 - | putative translation elongation factor EF-P Sca_1153 1171111 - 1170053 - | putative peptidase Sca_1154 1171343 - 1171930 + | hypothetical protein Sca_1155 1171962 - 1172177 + | hypothetical protein TERM 1438 1172227 - 1172175 - T 100 -20.4 -3.08088 | opp_overlap 1172180, overlap 1172180 AAATGGCGTAATAGA TAAAACTATAGCTTGCATTGTTCT GAATT AAAACAATGCAAGCTATAGTTTTT ACTTTCTATATGTCC TERM 1439 1172180 - 1172222 + T 100 -18.8 -5.07011 | opp_overlap 1172180 1172175 GCGTAATAGATAAAA CTATAGCTTGCATTGTTCTG AAT TAAAACAATGCAAGCTATAG TTTTTACTTTCTATA TERM 1440 1172222 - 1172180 - T 100 -20.3 -4.67943 | opp_overlap 1172180, overlap 1172175 GCGTAATAGATAAAA CTATAGCTTGCATTGTTCT GAATT AAAACAATGCAAGCTATAG TTTTTACTTTCTATA Sca_1156 1173056 - 1172226 - | putative biotin/lipoate A/B protein ligase family protein TERM 1441 1172411 - 1172431 + g 75 -5.5 -4.76874 | opp_overlap 1172413 1172423, overlap 1172423 TGTCATTAATCGCAA CAGCTTT ATCAATG AAAGCTG TTTTCATTTTATCTT TERM 1442 1172423 - 1172437 + g 72 -3.6 -4.89567 | opp_overlap 1172413 1172423, overlap 1172411 CAACAGCTTTATCAA TGAAAG CTG TTTTCA TTTTATCTTTTAAGC Sca_1157 1173239 - 1173625 + | putative rhodanese homology domain superfamily protein TERM 1443 1173646 - 1173673 + T 100 -9.4 -5.50499 | gap 1, opp_overlap 1173648 1173652 AGCAAAACCTGTTAA CAGCAA-TATCTT CAA AAGATAATTGCTG TTTTTTTGCATATAA TERM 1444 1173681 - 1173728 + T 82 -6.5 -5.18715 | gap 2, opp_overlap 1173691, overlap 1173691 AATTGCTGTTTTTTT GCATATAAAACCCCCTGCCTATT TTTA AAAAGACAGGGGG-TTTA-GTGC TTTTATTCTTTTTCT TERM 1445 1173720 - 1173691 - T 100 -12.9 -4.52589 | opp_overlap 1173691 1173681 TTTTTGCATATAAAA CCCCCTGCCTATT TTTA AAAAGACAGGGGG TTTAGTGCTTTTATT TERM 1446 1173691 - 1173720 + T 95 -10.7 -3.95567 | opp_overlap 1173691, overlap 1173681 TTTTTGCATATAAAA CCCCCTGCCTATT TTTA AAAAGACAGGGGG TTTAGTGCTTTTATT gcvPB'' 1174480 - 1173731 - | truncated glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (fragment 2) gcvPB' 1175205 - 1174456 - | truncated glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (fragment 1) TERM 1447 1174565 - 1174524 - G 100 -20.7 -2.79831 | opp_overlap 1174516 1174516 1174527 1174537, overlap 1174537 CCAATTTCCATGATA TTATGTTAACAAATCCTAA TGTA TTAGGATTTGTTAACATAA TTGCAGCCGTATTTT TERM 1448 1174527 - 1174562 + g 100 -18 -2.71483 | opp_overlap 1174524 1174537, overlap 1174516 1174516 1174537 ATTTCCATGATATTA TGTTAACAAATCCTAA TGTA TTAGGATTTGTTAACA TAATTGCAGCCGTAT TERM 1449 1174718 - 1174732 + g 84 -4.2 -5.55664 | overlap 1174719 ACAATAACTTCGTTA CGGTGA CCT TCACCA TTTTTTTCATGATAA TERM 1450 1174719 - 1174731 + g 74 -7.7 -3.92314 | overlap 1174718 CAATAACTTCGTTAC GGTGA CCT TCACC ATTTTTTTCATGATA gcvPA 1176544 - 1175198 - | putative glycine cleavage system P-protein subunit 1 TERM 1451 1175732 - 1175705 - G 81 -5.6 -5.14965 | overlap 1175706 1175707 AGTTGTAGCAAAAAA TCCACAATGTGG TCCG CCAAATTGTGCA GGGATTCCAAATGGT gcvT 1177659 - 1176565 - | putative aminomethyltransferase (glycine cleavage system T protein) TERM 1452 1177722 - 1177695 - R 100 -10.7 -4.946 | opp_overlap 1177695 1177697 1177715 ATTAAATATTAAAAA CAGGATAGCAA ATAAAA TTGCTACCCTG TAGTTACCTTCAGGA TERM 1453 1177839 - 1177817 - R 70 -8.6 -2.59927 | overlap 1177814 1177813 AATTCTGACAATTTA TTAAAAAGCA AGT TGCTTTTCAA TAGTCAAAACCTATG aroK 1178389 - 1177850 - | putative shikimate kinase Sca_1163 1179704 - 1179252 - | hypothetical protein Sca_1164 1180011 - 1179685 - | similar to general secretion pathway protein G TERM 1454 1179963 - 1179982 + g 71 -4.4 -4.81249 | GCATTTCTAACAATG TAAAAGCT TTTA AGTTTTTA TTTTTCAATTTAAAG Sca_1165 1181102 - 1180029 - | similar to type II secretion system protein pulF TERM 1455 1180714 - 1180694 - GR 71 -7.7 -3.44517 | overlap 1180692 TAATACCGAATAACA TAGTCATGA AAA TCATAACTA AAATCAATGGGTACT TERM 1456 1180735 - 1180746 + gr 83 -3 -5.66926 | AATGGGTACTGAATT GTTT TAAT AAAC TTTTGTTTTTTTTCA Sca_1166 1182048 - 1181074 - | similar to type II secretion system protein E TERM 1457 1182086 - 1182055 - R 100 -8.8 -5.24129 | opp_overlap 1182058, overlap 1182056 TCTTTTCATAAAAAA TCACCTCCTACATT AATA AACGTAGAAGGTGT TCAAATTTCTTTTAC TERM 1458 1182085 - 1182056 - R 100 -12.3 -3.73995 | opp_overlap 1182058, overlap 1182055 CTTTTCATAAAAAAT CACCTCCTACATT AATA AACGTAGAAGGTG TTCAAATTTCTTTTA Sca_1167 1182742 - 1182119 - | putative member of metallo-beta-lactamase superfamily Sca_1168 1183071 - 1182742 - | hypothetical protein TERM 1459 1182942 - 1182966 + g 74 -2.9 -5.28942 | overlap 1182944 1182944 TTAATGTATTCATTG GCGTTAATTGA TAA TCAATTAAACC TTTTTCTTTGAACTC TERM 1460 1182974 - 1182987 + g 72 -3.9 -4.96468 | ATTAAACCTTTTTCT TTGAA CTCT TTCAA TTTTGTTTGAATTTC glcA 1184057 - 1183071 - | glucokinase TERM 1461 1183478 - 1183495 + g 85 -9.9 -3.85817 | opp_overlap 1183472 1183475 1183477 1183478 CTAAATTAACAACAC CTGTTGC AGAT GCAACAG TTTCTAAACAACCGT TERM 1462 1183495 - 1183478 - G 74 -9.9 -2.71134 | opp_overlap 1183478, overlap 1183472 1183475 1183477 CTAAATTAACAACAC CTGTTGC AGAT GCAACAG TTTCTAAACAACCGT Sca_1170 1184257 - 1184057 - | hypothetical protein Sca_1171 1185698 - 1184238 - | hypothetical protein TERM 1463 1184282 - 1184293 + g 70 -3 -5.19275 | TCAACTCTTCTTTTA GATA TTTA TATC TTTTATTTTGTGGAT Sca_1172 1186257 - 1185715 - | putative 5-formyltetrahydrofolate cyclo-ligase TERM 1464 1186358 - 1186413 + r 70 -4.2 -4.89852 | overlap 1186348 GATACTCAACATTTT GATAACTTCCCTGTAAACCAATTACT TTTC ACTGTTTGCTTTACAGGAAAATTATC TTTTTATGAGTATCA pbpF 1188480 - 1186435 - | penicillin-binding protein Pbp2b TERM 1465 1188647 - 1188624 - R 100 -15.4 -5.48063 | opp_overlap 1188624 ATGTAATAGAAAAAA CAGCAATCGG TAAT CCGATTGCTG TTTTCAGTATAAAAC TERM 1466 1188624 - 1188647 + r 100 -15.4 -4.2349 | opp_overlap 1188624 ATGTAATAGAAAAAA CAGCAATCGG TAAT CCGATTGCTG TTTTCAGTATAAAAC sod 1189286 - 1188681 - | superoxide dismutase fur 1189893 - 1189486 - | putative ferric uptake regulator mreB 1190743 - 1189895 - | putative ABC transporter permease protein MreB mreA 1191513 - 1190743 - | putative ABC transporter, ATPase component MreA TERM 1467 1191617 - 1191589 - R 100 -14.9 -4.55625 | opp_overlap 1191592 1191595 ATTAACACGATAAAA TAATAAGGCAAAA TTA TTTTGCCTTATTA TCAAAAGTAAATTAT TERM 1468 1191592 - 1191614 + r 100 -12.2 -3.30243 | opp_overlap 1191589, overlap 1191595 AACACGATAAAATAA TAAGGCAAAA TTA TTTTGCCTTA TTATCAAAAGTAAAT TERM 1469 1191595 - 1191611 + r 84 -9.5 -3.7941 | opp_overlap 1191589, overlap 1191592 ACGATAAAATAATAA GGCAAAA TTA TTTTGCC TTATTATCAAAAGTA Sca_1178 1192519 - 1191629 - | putative AP endonuclease family 2 protein Sca_1179 1193877 - 1192537 - | putative helicase Sca_1180 1194995 - 1193901 - | hypothetical protein Sca_1181 1195666 - 1194992 - | hypothetical protein sigA 1196924 - 1195815 - | RNA polymerase sigma factor SigA dnaG 1198794 - 1197016 - | putative DNA primase DnaG TERM 1470 1197043 - 1197063 + g 80 -6.3 -5.01535 | opp_overlap 1197043 ATTCTTATTTATTAA TATTATCTT TTC GAGATAATA TTTTTGTAATTCTAA TERM 1471 1198879 - 1198913 + r 76 -8.8 -3.4314 | opp_overlap 1198878 1198886, overlap 1198886 AAAAATATATTGAAT TCAAAAACGCTGAT TTGTGTT ATCAGCGTTTTTAA TGTTATTCAGATTTA TERM 1472 1198886 - 1198906 + r 82 -6.9 -4.93316 | opp_overlap 1198886 1198878, overlap 1198879 TATTGAATTCAAAAA CGCTGAT TTGTGTT ATCAGCG TTTTTAATGTTATTC TERM 1473 1198906 - 1198886 - R 80 -6.9 -4.75174 | opp_overlap 1198879 1198886, overlap 1198878 TATTGAATTCAAAAA CGCTGAT TTGTGTT ATCAGCG TTTTTAATGTTATTC Sca_1185 1199746 - 1198916 - | conserved hypothetical protein in Sigma70 operon Sca_1186 1200250 - 1199759 - | truncated CBS domain protein TERM 1474 1200258 - 1200242 - G 71 -5.1 -4.56597 | opp_overlap 1200242 1200257 TCTTGCTTCTAAAAA TCCTGAC ATT GTGAGGA TTGCTAAATCTGGTC TERM 1475 1200850 - 1200805 - H 72 -6.1 -4.27465 | opp_overlap 1200807, overlap 1200802 1200806 GATAATTTAAAATAA CTCGTCCCAAGATTTCGAAAT GCTT ATTTCGTTATCTTGGGGCGTT TTTTTTATTTAAAAA TERM 1476 1200849 - 1200806 - H 78 -9.6 -3.15395 | opp_overlap 1200807, overlap 1200805 1200802 ATAATTTAAAATAAC TCGTCCCAAGATTTCGAAAT GCTT ATTTCGTTATCTTGGGGCGT TTTTTTTATTTAAAA TERM 1477 1200807 - 1200848 + H 100 -15.3 -6.23545 | opp_overlap 1200806 1200805 1200802 TAATTTAAAATAACT CGTCCCAAGATTTCGAAAT GCTT ATTTCGTTATCTTGGGGCG TTTTTTTTATTTAAA glyS 1200881 - 1202272 + | putative glycyl-tRNA synthetase TERM 1478 1202282 - 1202323 + T 95 -11.8 -3.75153 | opp_overlap 1202283 1202288, overlap 1202283 1202288 TTCTAATATAAATGA AGAAAAGAACGCCGTA GATTAACAGA TACGGCGTTCTTTTCA TTTAGCTTCCAAACG TERM 1479 1202322 - 1202283 - T 100 -15.3 -3.69341 | opp_overlap 1202283 1202282 1202288, overlap 1202288 TCTAATATAAATGAA GAAAAGAACGCCGTA GATTAACAGA TACGGCGTTCTTTTC ATTTAGCTTCCAAAC TERM 1480 1202283 - 1202322 + T 100 -15.3 -2.84878 | opp_overlap 1202283 1202288, overlap 1202282 1202288 TCTAATATAAATGAA GAAAAGAACGCCGTA GATTAACAGA TACGGCGTTCTTTTC ATTTAGCTTCCAAAC TERM 1481 1202288 - 1202317 + T 100 -9.4 -4.5852 | opp_overlap 1202288 1202283, overlap 1202283 1202282 TATAAATGAAGAAAA GAACGCCGTA GATTAACAGA TACGGCGTTC TTTTCATTTAGCTTC TERM 1482 1202317 - 1202288 - T 100 -9.4 -4.87052 | opp_overlap 1202283 1202282 1202288, overlap 1202283 TATAAATGAAGAAAA GAACGCCGTA GATTAACAGA TACGGCGTTC TTTTCATTTAGCTTC recO 1203076 - 1202321 - | putative recombination protein O TERM 1483 1202489 - 1202502 + g 72 -3.9 -4.89521 | TTTTTGTAGAATATC CATTA AATA TAATG TTTTATTTGAAATAT TERM 1484 1202938 - 1202952 + g 84 -4.3 -5.54264 | ATTGTGTATTTGCTT GCAAA CCTGT TTTGC TTTTTTTAGCTCTTT era 1204001 - 1203102 - | putative GTP-binding protein Era cdd 1204405 - 1203998 - | putative cytidine deaminase dgk 1204764 - 1204426 - | putative diacylglycerol kinase Sca_1192 1205229 - 1204768 - | hypothetical protein phoH 1206182 - 1205235 - | PhoH-like protein TERM 1485 1206365 - 1206389 + r 78 -10.1 -3.2045 | opp_overlap 1206365, overlap 1206363 TCGAACCTAAAAAAA TTAGGTACCAA AAA TTGGCACCTAA TCTTAATAAATTTTT TERM 1486 1206389 - 1206365 - R 100 -12.3 -5.53288 | opp_overlap 1206365 1206363 TCGAACCTAAAAAAA TTAGGTACCAA AAA TTGGCACCTAA TCTTAATAAATTTTT Sca_1194 1207044 - 1206403 - | hypothetical protein TERM 1487 1206470 - 1206487 + g 74 -4.9 -4.85545 | AATATTTCATTATCG TCAAAGC GTAA GTTTTGA TTTTGTTGATTTCCT TERM 1488 1206566 - 1206578 + g 76 -4.9 -5.0133 | CTATTTGAAAGGTAT TTATC ATT GATAA TTTTTTGAGCACGTC Sca_1195 1208044 - 1207058 - | hypothetical protein Sca_1196 1208780 - 1208064 - | hypothetical protein TERM 1489 1208926 - 1208889 - R 100 -8.6 -5.70761 | AAAATAAAAGAAAAA GGCCATAAATACTACC TGAATT GGTAATATATATGACC TTCGAAAACTGCATT rpsU 1209163 - 1208987 - | 30S ribosomal protein S21 Sca_1198 1210640 - 1209294 - | putative radical SAM family protein Sca_1199 1211398 - 1210646 - | hypothetical protein TERM 1490 1211350 - 1211377 + g 76 -10 -2.94633 | opp_overlap 1211355, overlap 1211355 CTTTTTCAGTAATAA AAAAACGCTGAT TTAT ATCAGCGTTTTG ATTTATAAAATATCT TERM 1491 1211355 - 1211372 + g 91 -9.9 -4.61873 | opp_overlap 1211355, overlap 1211350 TCAGTAATAAAAAAA CGCTGAT TTAT ATCAGCG TTTTGATTTATAAAA TERM 1492 1211372 - 1211355 - G 100 -9.9 -5.84381 | opp_overlap 1211355 1211350 TCAGTAATAAAAAAA CGCTGAT TTAT ATCAGCG TTTTGATTTATAAAA Sca_1200 1212338 - 1211400 - | putative ribosomal protein L11 methyltransferase (PrmA) family protein dnaJ 1213478 - 1212345 - | chaperone DnaJ TERM 1493 1213550 - 1213588 + r 74 -6.1 -4.4078 | opp_overlap 1213555, overlap 1213555 1213561 AGTTGGTTAAATAAT AAAAAGTCAAAGCCAAT TGTTC ATTGGCTTTGACTTAAA TTTTAATTCAAGAAG TERM 1494 1213583 - 1213555 - R 100 -14.8 -5.38549 | opp_overlap 1213555 1213550 1213561 GTTAAATAATAAAAA GTCAAAGCCAAT TGTTC ATTGGCTTTGAC TTAAATTTTAATTCA TERM 1495 1213555 - 1213583 + r 100 -14.8 -3.41708 | opp_overlap 1213555, overlap 1213550 1213561 GTTAAATAATAAAAA GTCAAAGCCAAT TGTTC ATTGGCTTTGAC TTAAATTTTAATTCA dnaK 1215480 - 1213657 - | chaperone protein DnaK (Hsp70) TERM 1496 1213785 - 1213806 + g 76 -2.3 -5.48054 | overlap 1213782 TCATAGATAGTTCTT GAACGACTT TTTC AAGTTCTTC TTTTTTAGTTTTAAT TERM 1497 1215174 - 1215215 + g 79 -6.9 -4.38273 | gap 1 TATCACCTAAATAGC TTTCAGCAGTGCTTTT-TAA GTT TTGTAAAATCATTGCTGAAA TTTCTTGTGGTGTAT grpE 1216129 - 1215533 - | putative GrpE protein (HSP-70 cofactor) hrcA 1217125 - 1216157 - | putative heat-inducible transcriptional repressor TERM 1498 1217091 - 1217103 + g 73 -6.3 -4.46254 | opp_overlap 1217090, overlap 1217083 TAATCTTCAACAATG GCATT CAG AATGC TTTGTTGTCTATTGG TERM 1499 1217256 - 1217246 - R 71 -3.2 -5.32565 | TAATCAATCAAAAAA GCCT CGA AGAC TTCATTTCCTATTAC hemN 1218351 - 1217230 - | putative oxygen-independent coproporphyrinogen oxidase III lepA 1220243 - 1218420 - | GTP-binding protein LepA rpsT 1220508 - 1220759 + | putative 30S ribosomal protein S20 TERM 1500 1220767 - 1220786 + T 100 -10.8 -5.82172 | opp_overlap 1220767 ACAAATAATGAAAAA GTTCAAGC AATC GCTTGAAC TTTTTTTATATTGAT TERM 1501 1220786 - 1220767 - T 100 -10.8 -5.05712 | opp_overlap 1220767 ACAAATAATGAAAAA GTTCAAGC AATC GCTTGAAC TTTTTTTATATTGAT Sca_1208 1221766 - 1220792 - | putative DNA-binding protein Sca_1209 1222178 - 1221840 - | truncated protein, similar to ComEC late competence protein 3 (fragment 2) Sca_1210 1224076 - 1222193 - | truncated protein, similar to ComEC late competence protein 3 (fragment 1) TERM 1502 1223591 - 1223627 + g 72 -7.5 -3.73872 | ATAAGTTGATATGTC GTTTGATGTTTCAAATT TGC AACTAGAAATATCAAAC TTGTTAAATGTTACT Sca_1211 1224545 - 1224084 - | putative deaminase similar to ComEB Sca_1212 1225288 - 1224620 - | hypothetical protein, similar to late competence operon protein ComEA TERM 1503 1224653 - 1224670 + g 70 -2.7 -5.18866 | overlap 1224654 TTTGAGCTTTTCGTA TGTTTTG TCAC CAAAACC TTTTATTTCTTTCAG TERM 1504 1225329 - 1225295 - R 77 -5.9 -4.87626 | CTCCAACATTAAAAA TCACTCCTTCAAT ATATAAACG ATCAAAGGAGTGA TTTTACTTTATTTTT Sca_1213 1226053 - 1225337 - | hypothetical protein Sca_1214 1226406 - 1226056 - | hypothetical protein Sca_1215 1226991 - 1226407 - | putative metal dependent phosphohydrolases with conserved 'HD' motif nad 1227604 - 1226981 - | putative nicotinate-nucleotide adenylyltransferase Sca_1217 1227845 - 1227555 - | hypothetical protein TERM 1505 1227865 - 1227879 + r 74 -5 -4.97312 | overlap 1227867 TCTCTCCTTTGTAAT TGCTGT AAC ACAGTA TTTTTCATTGCTTTT aroE 1228655 - 1227846 - | putative shikimate 5-dehydrogenease TERM 1506 1228232 - 1228265 + g 80 -8.9 -3.90112 | gap 1, opp_overlap 1228220 1228231 1228255, overlap 1228216 CAACAGACAATGTAT GGTCT-GCTGCTTCAT TCA ATGCAGCAGCAAGTCC TTTGCTTGCACCACC Sca_1219 1229765 - 1228665 - | hypothetical protein TERM 1507 1229201 - 1229185 - G 73 -9.5 -2.91144 | opp_overlap 1229185, overlap 1229182 1229187 GTACCTGGGAAACGA GATGTTG TTA CAACATC TTTTTCACCAACGCT TERM 1508 1229185 - 1229201 + g 91 -9.5 -4.56775 | opp_overlap 1229182 1229185 1229187 GTACCTGGGAAACGA GATGTTG TTA CAACATC TTTTTCACCAACGCT Sca_1220 1230293 - 1229766 - | hypothetical protein mtn 1230999 - 1230313 - | putative 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase greA 1231731 - 1231249 - | putative transcription elongation factor,similar to GreA udk 1232383 - 1231757 - | putative uridine kinase TERM 1509 1232012 - 1232028 + g 74 -3.8 -5.20781 | ATAAATCTTCACATC CATTAA ATCTC TTAATG TTTTGTTTTCTAGTG Sca_1224 1233654 - 1232557 - | truncated putative peptidase Sca_1225 1234597 - 1233668 - | putative peptidase Sca_1226 1235235 - 1234594 - | putative O-methyltransferase TERM 1510 1235292 - 1235268 - R 73 -3.6 -5.28166 | opp_overlap 1235272 1235290, overlap 1235272 GAAAATTAACAAAAA GAAATCAGCC TTTAT GACTGATTTA ATGATGTTACCAACT TERM 1511 1235288 - 1235272 - R 72 -4.4 -5.06961 | opp_overlap 1235272, overlap 1235268 ATTAACAAAAAGAAA TCAGCC TTTAT GACTGA TTTAATGATGTTACC TERM 1512 1235514 - 1235484 - R 100 -12.7 -4.65895 | opp_overlap 1235489, overlap 1235489 TGTGTTAGTTAAAAA GAAAAGACGAAGC TTGAT GCTCCGCCTTTTC AAACTTGATTAGATT TERM 1513 1235509 - 1235489 - R 84 -6.8 -5.2853 | opp_overlap 1235489, overlap 1235484 TAGTTAAAAAGAAAA GACGAAGC TTGAT GCTCCGCC TTTTCAAACTTGATT Sca_1227 1235839 - 1235528 - | hypothetical protein Sca_1228 1236290 - 1235862 - | hypothetical protein Sca_1229 1236556 - 1236293 - | hypothetical protein alaS 1239255 - 1236625 - | putative alanyl-tRNA synthetase TERM 1514 1239340 - 1239312 - R 95 -8.3 -5.60993 | TTTTGCATAAAAAAA TACATTCATCC TGTAAAG GGACGAATGTA TCGCGGTACCACCCT Sca_1231 1241982 - 1239562 - | hypothetical protein TERM 1515 1240617 - 1240631 + g 78 -8.6 -3.77196 | GGTGGAATAACCAGG TGTCGA CCA TCGACA TTTCGTCGATAATAA Sca_1232 1242657 - 1241986 - | conserved hypothetical protein with tetratricopeptide repeat domains TERM 1516 1242752 - 1242729 - R 95 -8.2 -5.48825 | opp_overlap 1242729 1242731 1242733 TATTATGTAAAAAAA GAGACGAG GTAATATT CTCGTCTC TATACTATTCATCTA TERM 1517 1242729 - 1242752 + r 72 -8.9 -2.94062 | opp_overlap 1242729, overlap 1242731 1242733 TATTATGTAAAAAAA GAGACGAGG TAATAT TCTCGTCTC TATACTATTCATCTA Sca_1233 1243877 - 1242765 - | putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1518 1242925 - 1242935 + g 75 -5.4 -4.82548 | opp_overlap 1242925 TTTTCATCAATACGA GTGA CTG TCAC TTTTGTATCTTTTTG iscS 1245019 - 1243880 - | putative cysteine desulfurase Sca_1235 1245201 - 1246199 + | putative luciferase-like monooxygenase TERM 1519 1246244 - 1246186 - T 100 -15.7 -3.93166 | opp_overlap 1246188 1246191 1246205 1246234, overlap 1246191 1246193 1246205 GTTTGAAAAAAGTAA TCCAAGATTTATAAAAAAACGGCGCCT GCGAT AGGCGCCGTTTTTTTATAAATATTATT TATCTTTGTTAAATT TERM 1520 1246188 - 1246242 + T 100 -21.2 -4.46072 | opp_overlap 1246186 1246191 1246193 1246205, overlap 1246191 1246205 1246234 TTGAAAAAAGTAATC CAAGATTTATAAAAAAACGGCGCCTG CGA TAGGCGCCGTTTTTTTATAAATATTA TTTATCTTTGTTAAA TERM 1521 1246239 - 1246191 - T 100 -22.2 -3.31294 | opp_overlap 1246188 1246191 1246205 1246234, overlap 1246186 1246193 1246205 AAAAAAGTAATCCAA GATTTATAAAAAAACGGCGCCT GCGAT AGGCGCCGTTTTTTTATAAATA TTATTTATCTTTGTT TERM 1522 1246191 - 1246239 + T 100 -22.9 -4.31608 | opp_overlap 1246191 1246186 1246193 1246205, overlap 1246188 1246205 1246234 AAAAAAGTAATCCAA GATTTATAAAAAAACGGCGCCTG CGA TAGGCGCCGTTTTTTTATAAATA TTATTTATCTTTGTT TERM 1523 1246237 - 1246193 - T 100 -24.8 -3.19808 | opp_overlap 1246191 1246188 1246205 1246234, overlap 1246191 1246186 1246205 AAAAGTAATCCAAGA TTTATAAAAAAACGGCGCCT GCGAT AGGCGCCGTTTTTTTATAAA TATTATTTATCTTTG TERM 1524 1246225 - 1246205 - T 100 -14 -5.65177 | opp_overlap 1246191 1246188 1246205, overlap 1246193 1246191 1246186 AGATTTATAAAAAAA CGGCGCCT GCGAT AGGCGCCG TTTTTTTATAAATAT TERM 1525 1246205 - 1246225 + T 100 -14.7 -5.65177 | opp_overlap 1246205 1246193 1246191 1246186, overlap 1246191 1246188 AGATTTATAAAAAAA CGGCGCCTG CGA TAGGCGCCG TTTTTTTATAAATAT Sca_1236 1246446 - 1246240 - | hypothetical protein TERM 1526 1246374 - 1246391 + g 70 -5.6 -4.46233 | CTAAATCCTTATTAT CAGTAG CATTTC CTACTG TTTCTTTAACATTAC Sca_1237 1246685 - 1246515 - | hypothetical protein TERM 1527 1246595 - 1246612 + g 79 -3.5 -5.45726 | gap 1 GACCTTTTTCTTTTT TGGAATGA TGT TC-TTCCA TTTTTTTCGGATCTG TERM 1528 1246834 - 1246806 - R 86 -7.5 -5.32882 | opp_overlap 1246806 TATTAGCACAAAAAA GTTTACCAACCTA ACG TCAGTTGGCAAAC TTTTTAAAATTAGAT Sca_1238 1247263 - 1246844 - | hypothetical protein Sca_1239 1247350 - 1248630 + | hypothetical protein TERM 1529 1248646 - 1248685 + T 83 -10.2 -3.22668 | gap 1, opp_overlap 1248646 1248651, overlap 1248650 1248658 AAAAGGTTGTATAAT GAAAAGCCGAG-ACATAGT CAT ACTATGTTCTCAGCATTTC TGTTATACAGCCTTT TERM 1530 1248685 - 1248646 - T 100 -12.4 -2.59323 | gap 1, opp_overlap 1248646 1248650 1248658, overlap 1248651 AAAAGGTTGTATAAT GAAAAGCCGAG-ACATAGT CAT ACTATGTTCTCAGCATTTC TGTTATACAGCCTTT TERM 1531 1248680 - 1248651 - T 100 -10.9 -4.48987 | gap 1, opp_overlap 1248650 1248646 1248658, overlap 1248646 GTTGTATAATGAAAA GCCGAG-ACATAGT CAT ACTATGTTCTCAGC ATTTCTGTTATACAG Sca_1240 1249479 - 1248700 - | hypothetical protein TERM 1532 1249598 - 1249575 - R 100 -14 -5.95539 | TTGTAAATAAAAAAA TACGCAGAAC CGAA GTTCTGCGTA CGATAGAATCCGTTG aspS 1251629 - 1249863 - | aspartyl-tRNA synthetase hisS 1252919 - 1251633 - | histidyl-tRNA synthetase TERM 1533 1252552 - 1252565 + g 73 -2.3 -5.33026 | opp_overlap 1252552, overlap 1252553 CCAAATTGATTAAAT TGACG ATAA CGTCC TTTTTGTTTACGTTC TERM 1534 1252979 - 1252948 - R 100 -8.8 -5.63517 | overlap 1252949 TTTGTAAATAAAAAA GCCCTTGCATGATA TCGC TATCACACAAGGGA CGAATATTCCGTGTT TERM 1535 1252978 - 1252949 - R 100 -12.3 -3.97026 | overlap 1252948 TTGTAAATAAAAAAG CCCTTGCATGATA TCGC TATCACACAAGGG ACGAATATTCCGTGT Sca_1243 1254124 - 1253249 - | hypothetical protein TERM 1536 1253474 - 1253485 + g 71 -4.4 -4.72201 | overlap 1253466 GCTTAGTGCTTCAGC CAAG CCTT CTTG TTGTTTTTTATACCA Sca_1244 1254573 - 1254121 - | putative D-tyrosyl-tRNA(Tyr) deacylase TERM 1537 1254370 - 1254360 - G 76 -6.8 -4.51196 | opp_overlap 1254359 GTGAAATTGATAAAA TGGC ACC GCCA ACTTGCTGTACATTT relA 1256778 - 1254589 - | GTP pyrophosphokinase TERM 1538 1256574 - 1256558 - G 79 -5.1 -5.11613 | ACATCATGTAAAAAA CCAGCAA CAA TTGTTGG TCCATCCAAGTGCAT TERM 1539 1257132 - 1257097 - R 100 -11.4 -4.20953 | gap 1, opp_overlap 1257101, overlap 1257101 CGAAAATAATAACAA TAAATCGCCTACCACGA CAT TCG-AGTAAGCGATTTA TAAACATATTCCTAT TERM 1540 1257128 - 1257101 - R 83 -7.8 -4.61648 | gap 1, opp_overlap 1257101, overlap 1257097 AATAATAACAATAAA TCGCCTACCACGA CAT TCG-AGTAAGCGA TTTATAAACATATTC apt 1257670 - 1257152 - | adenine phosphoribosyl transferase Sca_1247 1259966 - 1257690 - | putative single-strand DNA-specific exonuclease TERM 1541 1259305 - 1259285 - G 75 -9.7 -2.92858 | opp_overlap 1259285, overlap 1259284 1259287 TTAATGATACTAAAT CAGCAATCG TAC CGATGGCTG CTAGTGCTGTGTAGT TERM 1542 1259894 - 1259917 + g 81 -8.3 -4.25088 | opp_overlap 1259906 TAGGTGTCAGTTTCA TTTCTGATG CAATTT CATCAGAAA TTTGATTTGTATTTT TERM 1543 1260082 - 1260061 - R 100 -14.5 -5.19879 | TTTTAAATAGAAAAA CTCCCGGAA AGTA TTCCGGGAG TCAAAAAACAAGTAT secDF 1262377 - 1260101 - | putative protein-export membrane protein SecDF TERM 1544 1261175 - 1261161 - G 73 -8.6 -3.32882 | AATGATAATAAGATA CGTGTT AAG AACACG GCTGTAACGAAACTC TERM 1545 1262342 - 1262366 + g 70 -3 -5.08601 | gap 1, opp_overlap 1262342 AAGCAGAACAACCAA CAGTAAGAATG CAAT TATTCT-ACTG TTTTTCTTCACATGA TERM 1546 1262761 - 1262713 - R 100 -15.7 -3.2241 | opp_overlap 1262719, overlap 1262719 TATTCCTTACAAAAT TAAAAACACCTCTTATTTTATCC CGA AGATAAAGTAAGAGGTGTTTGTA TCATCAATATTATGT TERM 1547 1262755 - 1262719 - R 100 -14.7 -5.1417 | opp_overlap 1262719, overlap 1262713 TTACAAAATTAAAAA CACCTCTTATTTTATCC CGA AGATAAAGTAAGAGGTG TTTGTATCATCAATA TERM 1548 1262719 - 1262755 + r 100 -16.2 -4.0942 | opp_overlap 1262713 1262719 TTACAAAATTAAAAA CACCTCTTATTTTATC CCGAA GATAAAGTAAGAGGTG TTTGTATCATCAATA Sca_1249 1263090 - 1262830 - | hypothetical protein tgt 1264246 - 1263104 - | tRNA-guanine transglycosylase queA 1265287 - 1264262 - | putative S-adenosylmethionine tRNA ribosyltransferase ruvB 1266293 - 1265277 - | holliday junction DNA helicase ruvA 1266923 - 1266318 - | holliday junction DNA helicase Sca_1254 1267391 - 1266936 - | hypothetical protein obg 1268694 - 1267402 - | Spo0B-associated GTP-binding protein TERM 1549 1268138 - 1268148 + g 73 -5.4 -4.67038 | GTGAAGTGGTAAGCG CCTA TTT TAGG TTTTGCTTTTGAAAC TERM 1550 1268810 - 1268788 - R 100 -15 -5.40873 | opp_overlap 1268788 AAGACAAAAATAAAA CACCAGAAGT ATG ACTTCTGGTG TTACGTTAACAAAAA TERM 1551 1268788 - 1268810 + r 100 -15 -3.17075 | opp_overlap 1268788 AAGACAAAAATAAAA CACCAGAAGT ATG ACTTCTGGTG TTACGTTAACAAAAA rpmA 1269110 - 1268826 - | 50S ribosomal protein L27 Sca_1257 1269442 - 1269122 - | hypothetical protein TERM 1552 1269339 - 1269325 - G 71 -4.2 -4.87803 | overlap 1269326 CACTTCCAAACAAAA CTGCTG AGG CACCAG CACAGACAATATCAT Sca_1258a 1269753 - 1269445 - | 50S ribosomal protein L21 TERM 1553 1269599 - 1269612 + g 70 -6.7 -4.10657 | GTAGCACCTTCTACT GTTGG AGCA CCAAC TTTTACAGCGTCTCC Sca_1259 1270398 - 1269877 - | hypothetical protein Sca_1260 1271246 - 1270398 - | hypothetical protein TERM 1554 1271389 - 1271347 - R 100 -13.8 -5.626 | opp_overlap 1271350 1271356, overlap 1271315 1271348 TACTTTACAAAAAAA GGAGTATCAGCAAATTTA TTGCTTC TAAATTTGCTGATACTCT ATGAATAACTAGCCC TERM 1555 1271388 - 1271348 - R 100 -17.3 -3.96475 | opp_overlap 1271350 1271356, overlap 1271315 1271347 ACTTTACAAAAAAAG GAGTATCAGCAAATTTA TTGCTTC TAAATTTGCTGATACTC TATGAATAACTAGCC TERM 1556 1271350 - 1271386 + r 100 -14.1 -2.91912 | opp_overlap 1271348 1271347, overlap 1271356 TTTACAAAAAAAGGA GTATCAGCAAATTTA TTGCTTC TAAATTTGCTGATAC TCTATGAATAACTAG Sca_1261 1271595 - 1271455 - | hypothetical protein TERM 1557 1271532 - 1271550 + g 73 -5.3 -4.5774 | CTTCTTTTCTCCATT GCTCGAA TAATT TTTGAGC TTTTGATTGTTCGTC Sca_1262 1272150 - 1271686 - | hypothetical protein Sca_1263 1272299 - 1272469 + | hypothetical protein TERM 1558 1272495 - 1272518 + T 74 -6.1 -4.49314 | opp_overlap 1272495, overlap 1272492 AATTAAAAGACAAAA CCTAATTGC GTTTAA GTAATTAGG TTATTTTTAATCGTC radC 1273205 - 1272525 - | putative DNA repair protein RadC Sca_1265 1273940 - 1273218 - | hypothetical protein TERM 1559 1274085 - 1274124 + r 74 -6.6 -4.27886 | opp_overlap 1274090, overlap 1274088 1274090 TTTAAAATACTAATA AAAAAGATGAAACACAAA TTTA TTTGCGTTTCATCTCTTC TTTATATATTTAAGA TERM 1560 1274088 - 1274121 + r 81 -8.3 -4.24364 | opp_overlap 1274090, overlap 1274085 1274090 AAAATACTAATAAAA AAGATGAAACACAAA TTTA TTTGCGTTTCATCTC TTCTTTATATATTTA TERM 1561 1274090 - 1274119 + r 90 -10.9 -3.69252 | opp_overlap 1274090, overlap 1274088 1274085 AATACTAATAAAAAA GATGAAACACAAA TTTA TTTGCGTTTCATC TCTTCTTTATATATT TERM 1562 1274119 - 1274090 - R 100 -13.1 -5.54885 | opp_overlap 1274088 1274085 1274090 AATACTAATAAAAAA GATGAAACACAAA TTTA TTTGCGTTTCATC TCTTCTTTATATATT folC'' 1274553 - 1274134 - | truncated putative folylpolyglutamate synthase (fragment 2) folC' 1275403 - 1274585 - | truncated putative folylpolyglutamate synthase (fragment 1) valS 1278045 - 1275415 - | valyl-tRNA synthetase TERM 1563 1278097 - 1278071 - H 95 -8.1 -5.61881 | gap 1, opp_overlap 1278071 1278073, overlap 1278087 1278092 CCTTAAAAATAAAAA CACCCGTTCCTA AACA TAGGA-CGGATG TTCCGTGGTACCACC tag 1278356 - 1278916 + | putative DNA-3-methyladenine glycosidase TERM 1564 1279248 - 1279235 - g 70 -5.3 -4.48987 | TCCTGATAATGAAAA CAATC AGCC GATTG ATATACCGATTCAAC pcp 1278954 - 1279595 + | putative pyrrolidone-carboxylate peptidase TERM 1565 1279601 - 1279635 + T 86 -7.3 -5.12785 | opp_overlap 1279606, overlap 1279606 AATTCAATAATATAG AAAAACTGCCTCT TTTCAATTC AGAGGCAGTTTTG TTTATTTTTTGGTTG TERM 1566 1279606 - 1279630 + T 90 -7.2 -5.3472 | opp_overlap 1279606, overlap 1279601 AATAATATAGAAAAA CTGCCTCT TTTCAATTC AGAGGCAG TTTTGTTTATTTTTT TERM 1567 1279630 - 1279606 - T 86 -7.2 -5.1383 | opp_overlap 1279601 1279606 AATAATATAGAAAAA CTGCCTCT TTTCAATTC AGAGGCAG TTTTGTTTATTTTTT Sca_1272 1280713 - 1279637 - | hypothetical protein TERM 1568 1280835 - 1280804 - R 100 -11.8 -4.61527 | opp_overlap 1280804 1280809, overlap 1280809 AAAATTGCCCAAAAA TAAAAGCACATACC TAAA GGTATGCACTTTTA TAGATTTCAAATTTG TERM 1569 1280830 - 1280809 - R 86 -7.3 -5.26119 | opp_overlap 1280804 1280809, overlap 1280804 TGCCCAAAAATAAAA GCACATACC TAAA GGTATGCAC TTTTATAGATTTCAA hemL 1282150 - 1280861 - | glutamate-1-semialdehyde 2,1-aminomutase hemB 1283135 - 1282152 - | delta-aminolevulinic acid dehydratase hemD 1283821 - 1283132 - | putative uroporphyrinogen III synthase TERM 1570 1283347 - 1283322 - G 77 -8.4 -3.84406 | opp_overlap 1283321 1283322 TCTGCAGCAGAAGAA CTTGCAAATG CTATGC CATTCGCAAG ATTTCTTTTTAATAA hemC 1284774 - 1283848 - | porphobilinogen deaminase hemX 1285630 - 1284806 - | hemA concentration negative effector TERM 1571 1285501 - 1285473 - G 90 -9 -4.44187 | ACATATAAAGACAAA GAGATTGTTTGA AACAA CCAAACAATCCC CAATGTATAAAAACC hemA 1286990 - 1285653 - | glutamyl-tRNA reductase Sca_1279 1287859 - 1287272 - | putative GTP-binding protein TERM 1572 1287994 - 1287955 - R 100 -16.8 -5.95946 | opp_overlap 1287953 1287969 CCAACAACAAAAAAA TACACTTCAAACTACTCA GTAT TGAGTAATTCGAAGTGTA AGGTTAATTAATCAA clpX 1289272 - 1288010 - | protease ClpX TERM 1573 1289618 - 1289563 - R 100 -14.4 -3.96624 | gap 1, opp_overlap 1289567 1289568, overlap 1289567 1289568 TATTCCGATTATAAA TCAAC-TGTAGAGGATGAGATAGCAAT TGA ATAACTATCTCACCCTCTACATGTTTA ATTATACAAATGATT TERM 1574 1289567 - 1289614 + r 95 -10.8 -3.99678 | gap 1, opp_overlap 1289563 1289567 1289568, overlap 1289568 CCGATTATAAATCAA C-TGTAGAGGATGAGATAGCAAT TGA ATAACTATCTCACCCTCTACATG TTTAATTATACAAAT TERM 1575 1289613 - 1289567 - R 100 -15.4 -3.63228 | opp_overlap 1289567 1289568, overlap 1289563 1289568 CCGATTATAAATCAA CTGTAGAGGATGAGATAGCAAT TGA ATAACTATCTCACCCTCTACAT GTTTAATTATACAAA TERM 1576 1289612 - 1289568 - R 100 -18.9 -2.77455 | opp_overlap 1289568 1289567, overlap 1289567 1289563 CGATTATAAATCAAC TGTAGAGGATGAGATAGCAAT TGA ATAACTATCTCACCCTCTACA TGTTTAATTATACAA TERM 1577 1289568 - 1289612 + r 100 -14.5 -3.5891 | opp_overlap 1289567 1289563 1289568, overlap 1289567 CGATTATAAATCAAC TGTAGAGGATGAGATAGCAAT TGA ATAACTATCTCACCCTCTACA TGTTTAATTATACAA tig 1290965 - 1289643 - | trigger factor Sca_1282 1292068 - 1291130 - | hypothetical protein Sca_1283 1292695 - 1292084 - | hypothetical protein TERM 1578 1292793 - 1292827 + r 79 -5.8 -5.0538 | opp_overlap 1292793 CTTTTAAACAAAAAA CACTCAACCATCGA ATTTCTA TCAATGATTGAGTG TTTTTTAAGATAAGC TERM 1579 1292827 - 1292793 - R 100 -10.2 -5.63517 | opp_overlap 1292793 CTTTTAAACAAAAAA CACTCAACCATCGA ATTTCTA TCAATGATTGAGTG TTTTTTAAGATAAGC rplT 1293199 - 1292843 - | 50S ribosomal protein L20 rpmI 1293507 - 1293307 - | 50S ribosomal protein L35 TERM 1580 1293374 - 1293384 + g 86 -5.4 -5.34309 | ACTAAGCTAGCTTTA CGTA ATT TACG TTTTTGTTTAGTACT infC 1294065 - 1293538 - | translation initiation factor IF-3 TERM 1581 1294100 - 1294123 + r 100 -18.2 -4.7629 | opp_overlap 1294100 TATCCCAAGTAAAAA GAGCGGGCAC AGAA GTGCCCGCTC TTTTTCCATTAGTCA TERM 1582 1294123 - 1294100 - R 100 -18.2 -4.87291 | opp_overlap 1294100 TATCCCAAGTAAAAA GAGCGGGCAC AGAA GTGCCCGCTC TTTTTCCATTAGTCA lysP 1295773 - 1294286 - | lysine-specific permease TERM 1583 1295853 - 1295821 - g 100 -12.1 -6.01187 | opp_overlap 1295824 AATTAAATAAAAAAA CAATGGTTGCAATTC CAA GATATGCAACCATTG TTCGACTTTATAAAT TERM 1584 1295824 - 1295850 + G 72 -8 -3.71991 | opp_overlap 1295821 TAAATAAAAAAACAA TGGTTGCAATTC CAA GATATGCAACCA TTGTTCGACTTTATA Sca_1288 1295802 - 1295894 + | hypothetical protein thrS 1298044 - 1296101 - | threonyl-tRNA synthetase 1 TERM 1585 1298091 - 1298115 + r 80 -10 -3.31144 | opp_overlap 1298091 GTAAAAACAAAAAAA CCTCCTCCCT AATAA AGGGACGAGG TTATCGCGATACCAC TERM 1586 1298115 - 1298091 - R 100 -10 -6.20267 | opp_overlap 1298091 GTAAAAACAAAAAAA CCTCCTCCCT AATAA AGGGACGAGG TTATCGCGATACCAC dnaI 1299290 - 1298367 - | primosomal protein TERM 1587 1299092 - 1299116 + g 70 -5.7 -4.37544 | opp_overlap 1299088 1299091, overlap 1299082 AGTCTGCAAAATCAT GACCATCATAA TGT TTTTGCTGGTC TTTGTATTCTTGTAA dnaB 1300708 - 1299287 - | chromosome replication initiation/membrane attachment protein Sca_1292 1301184 - 1300711 - | hypothetical protein TERM 1588 1301312 - 1301279 - R 100 -11.1 -5.39721 | gap 1 TTATTACATAAAAAA CCAGCCGACTGG-AGC CCT ACTTCCAATCAGCTGG TGAAAATATATTTGA gapB 1302360 - 1301338 - | glyceraldehyde 3-phosphate dehydrogenase 2 TERM 1589 1302482 - 1302459 - R 86 -2.6 -6.11392 | opp_overlap 1302459 AAATAAACAAAAAAA TTACTTAT CGTAAATT ATAAGTAA TTTAAAGTGTGCTAA coaE 1303143 - 1302517 - | putative dephospho-CoA kinase mutM 1304033 - 1303161 - | formamidopyrimidine-DNA glycosylase TERM 1590 1303451 - 1303441 - G 70 -5.4 -4.49556 | opp_overlap 1303441 TTTGCATTAAATAAA GCTT CAC AAGC GTATATATTTCCACA TERM 1591 1303629 - 1303597 - G 71 -5 -4.64766 | gap 1, opp_overlap 1303600 1303606, overlap 1303600 GCCATATCGGAAAAA GAAGAATGC-GCAGA TAAA TCTGCTACATTCTTG ATTTCACCGAAACGG TERM 1592 1303626 - 1303600 - G 76 -6.7 -4.43351 | gap 1, opp_overlap 1303600 1303606, overlap 1303597 ATATCGGAAAAAGAA GAATGC-GCAGA TAAA TCTGCTACATTC TTGATTTCACCGAAA polA 1306679 - 1304049 - | DNA polymerase I TERM 1593 1306741 - 1306768 + r 72 -8.4 -3.30441 | opp_overlap 1306741 1306744, overlap 1306739 1306744 AATTCACTCACAAAA TAAGCGCCGGAA TCAC TTCCGACGCATA TATTAATTATGAATT TERM 1594 1306768 - 1306741 - R 100 -10.6 -4.43501 | opp_overlap 1306741 1306739 1306744, overlap 1306744 AATTCACTCACAAAA TAAGCGCCGGAA TCAC TTCCGACGCATA TATTAATTATGAATT TERM 1595 1306765 - 1306744 - R 100 -12.3 -4.33182 | opp_overlap 1306744 1306741 1306739, overlap 1306741 TCACTCACAAAATAA GCGCCGGAA TCAC TTCCGACGC ATATATTAATTATGA TERM 1596 1306744 - 1306765 + r 75 -10.1 -2.52156 | opp_overlap 1306741 1306744, overlap 1306741 1306739 TCACTCACAAAATAA GCGCCGGAA TCAC TTCCGACGC ATATATTAATTATGA phoR 1308484 - 1306775 - | putative alkaline phosphatase synthesis sensor protein TERM 1597 1307625 - 1307653 + g 79 -6.9 -4.43477 | opp_overlap 1307631 1307632 1307634, overlap 1307632 ATCGTTTTTTCAGTT TTAAAAGCATTGA TAA TCAATGTGTTTAA TTTTCCTTGAATAAC TERM 1598 1307799 - 1307817 + g 93 -6.8 -5.57396 | TTTTCTAACGTAGTT TTCAATCG ATT TGATTGAA TTTTTTGTTCGTTAT phoP 1309197 - 1308481 - | alkaline phosphatase synthesis transcriptional regulatory protein TERM 1599 1309361 - 1309334 - R 100 -13.6 -6.01369 | opp_overlap 1309334 CAAATAATAAAAAAA GCTATACTGCCT GAGT AGACAGTATAGC TGTAATGGATTTTGA TERM 1600 1309334 - 1309361 + r 85 -11.4 -2.8619 | opp_overlap 1309334 CAAATAATAAAAAAA GCTATACTGCCT GAGT AGACAGTATAGC TGTAATGGATTTTGA TERM 1601 1309397 - 1309414 + r 70 -5.6 -4.28774 | opp_overlap 1309396 1309399 GATTTTTAATCAATT CATCAG CGAATT CTGATG TTTTAACTTCAGTAG icd 1310642 - 1309377 - | isocitrate dehydrogenase TERM 1602 1310616 - 1310626 + g 78 -4 -5.31275 | TAATAAACCGTCTTC TTGT TTA ACAA TTTTTTCTGGTGCCA citZ 1311824 - 1310706 - | citrate synthase II TERM 1603 1312986 - 1312967 - g 71 -5 -4.67982 | TTCCATGGAATAAAA TGGACCCT TCAG AAAGTCCA TTCGTTCGCTTATTT cycA 1312180 - 1313550 + | D-serine/D-alanine/glycine transporter TERM 1604 1313585 - 1313616 + T 81 -6 -5.28481 | gap 1, opp_overlap 1313585 TTTATTTCACTAAAA GAACGGGT-ACCT ACTTCTG AGGTCACTCGTTC TTTTTTGATTAAATA TERM 1605 1313847 - 1313813 - T 100 -18.2 -4.20531 | opp_overlap 1313813 TATATGTATGGAAAA GAGCTCAAACCTATTT CAA AAATAAGTTTGAGCTC TTTCTTTTCATTGAT TERM 1606 1313813 - 1313847 + T 100 -16 -4.78981 | opp_overlap 1313813 TATATGTATGGAAAA GAGCTCAAACCTATTT CAA AAATAAGTTTGAGCTC TTTCTTTTCATTGAT pykA 1315644 - 1313884 - | pyruvate kinase TERM 1607 1315617 - 1315628 + g 71 -4.4 -4.82678 | CTGATGCAGGTCCAA TCGT ACAA ACGA TTTTAGTTTTTCTCA pfk 1316644 - 1315676 - | 6-phosphofructokinase TERM 1608 1316954 - 1316918 - R 100 -14.8 -5.42259 | gap 1, opp_overlap 1316912 1316920 1316922 1316941, overlap 1316941 GTAGTTGTAAAAAAA GAGATTCTATGACGCTA AAAA TAGCGT-ATAGAATCTC TCTACCCTTATTGTT TERM 1609 1316920 - 1316952 + r 87 -11.6 -2.93367 | gap 1, opp_overlap 1316918 1316941, overlap 1316912 1316922 1316941 AGTTGTAAAAAAAGA GATTCTATGACGCTA AAAA TAGCGT-ATAGAATC TCTCTACCCTTATTG accA 1317909 - 1316962 - | acetyl-CoA carboxylase carboxyl transferase subunit alpha TERM 1610 1317543 - 1317555 + g 74 -4.9 -4.74013 | CCATACCAAAATTAC GATAA ATA TTATC TTTTGTATCTTTACC accD 1318774 - 1317902 - | acetyl-CoA carboxylase transferase beta subunit Sca_1307 1320072 - 1318846 - | malate dehydrogenase TERM 1611 1319035 - 1319054 + g 89 -5.8 -5.31059 | opp_overlap 1319024, overlap 1319033 1319031 TAAATCTGCAATTGC TGAAACAG CTGC TTGTTTCA TTTTTTCATTAATAT TERM 1612 1320322 - 1320302 - R 100 -12.7 -4.7373 | overlap 1320290 TGATTGCATTAAAAA TGCTAAGCA AAC TGCTTAGCA TCAAGTTAAATGATT dnaE 1323531 - 1320328 - | DNA polymerase III alpha subunit TERM 1613 1321565 - 1321579 + g 76 -4.2 -5.15167 | overlap 1321567 TGTTGTCTCTCGTTT TCGAGC ATA GCTCTA TTTTTCTTACTCATC TERM 1614 1321567 - 1321577 + g 73 -6.8 -4.19587 | overlap 1321565 TTGTCTCTCGTTTTC GAGC ATA GCTC TATTTTTCTTACTCA Sca_1309 1324498 - 1323557 - | hypothetical protein TERM 1615 1324533 - 1324554 + r 72 -6.7 -4.12456 | gap 1 CTATCTAGCTTTCCA GCATCTGACA TAT TGTCA-ATGC TTTTGCCACTGGTGT Sca_1310 1325817 - 1324522 - | hypothetical protein Sca_1311 1326036 - 1326449 + | hypothetical protein TERM 1616 1326445 - 1326495 + T 100 -13 -3.78329 | opp_overlap 1326456, overlap 1326456 CTGTATTAATTGTTA AATAATAAAAATGCTTGTACAG CAAAAAA CTGTACAAGCATTTTTATTTTG TTTAACTTAATCGAA TERM 1617 1326456 - 1326484 + T 100 -11.9 -5.67711 | opp_overlap 1326456, overlap 1326445 GTTAAATAATAAAAA TGCTTGTACAG CAAAAAA CTGTACAAGCA TTTTTATTTTGTTTA TERM 1618 1326484 - 1326456 - T 100 -12.6 -5.38549 | opp_overlap 1326456 1326445 GTTAAATAATAAAAA TGCTTGTACAGC AAAAA ACTGTACAAGCA TTTTTATTTTGTTTA Sca_1312 1327194 - 1326502 - | hypothetical protein Sca_1313 1327335 - 1328390 + | putative Xaa-Pro dipeptidase TERM 1619 1328427 - 1328404 - T 100 -12.6 -4.17523 | opp_overlap 1328404, overlap 1328395 AAATAATTTCCAAAA CAGATTTGCA AGTT TGCAAATCTG TTTTTTTATACAAAA TERM 1620 1328404 - 1328427 + T 100 -12.6 -5.60993 | opp_overlap 1328404 1328395 AAATAATTTCCAAAA CAGATTTGCA AGTT TGCAAATCTG TTTTTTTATACAAAA TERM 1621 1328444 - 1328486 + T 70 -5.8 -4.31688 | gap 1, opp_overlap 1328445, overlap 1328445 TTTTTTATACAAAAA ACTCCAGCATATTCTGT AAAACCCTAA ACAGAAT-TGCTGGAGC TTTTAAATTGATGTT TERM 1622 1328445 - 1328485 + T 76 -9.3 -3.17928 | gap 1, opp_overlap 1328445, overlap 1328444 TTTTTATACAAAAAA CTCCAGCATATTCTGT AAAACCCTAA ACAGAAT-TGCTGGAG CTTTTAAATTGATGT TERM 1623 1328485 - 1328445 - T 100 -9.3 -5.36441 | gap 1, opp_overlap 1328445 1328444 TTTTTATACAAAAAA CTCCAGCATATTCTGT AAAACCCTAA ACAGAAT-TGCTGGAG CTTTTAAATTGATGT ald 1329674 - 1328559 - | alanine dehydrogenase Sca_1315 1329883 - 1330386 + | hypothetical protein TERM 1624 1330461 - 1330426 - T 87 -8.4 -4.75174 | opp_overlap 1330429, overlap 1330418 1330429 TATTTAAGTTAAAAA TAACCAGGACAGAT GATATAAA ATCTGCCCTGGTTT TGTTTTGGTAAAATA TERM 1625 1330458 - 1330429 - T 100 -10.1 -4.47888 | opp_overlap 1330429, overlap 1330426 TTAAGTTAAAAATAA CCAGGACAGAT GATATAAA ATCTGCCCTGG TTTTGTTTTGGTAAA TERM 1626 1330429 - 1330458 + T 90 -7.9 -5.13722 | opp_overlap 1330429 1330426 TTAAGTTAAAAATAA CCAGGACAGAT GATATAAA ATCTGCCCTGG TTTTGTTTTGGTAAA TERM 1627 1330553 - 1330495 - T 93 -8.5 -5.2894 | opp_overlap 1330496, overlap 1330496 1330499 AAATACAAAATAAAA TTAATCCAGTTGATAGCTTTTTCTT AATTAAAAG ACAAATAAGCTATCAACTGGATTAT TTTTTAATTACAAGC TERM 1628 1330496 - 1330552 + T 100 -11.4 -5.26875 | gap 1, opp_overlap 1330496 1330495 1330499 AATACAAAATAAAAT TAATCCAGTTGATAGCTT-TTTCTT AATTAAAA GACAAATAAGCTATCAACTGGATTA TTTTTTAATTACAAG TERM 1629 1330552 - 1330496 - T 95 -12 -3.73704 | opp_overlap 1330496, overlap 1330495 1330499 AATACAAAATAAAAT TAATCCAGTTGATAGCTTTTTCTT AATTAAAAG ACAAATAAGCTATCAACTGGATTA TTTTTTAATTACAAG TERM 1630 1330549 - 1330499 - T 86 -9.3 -3.94607 | opp_overlap 1330496, overlap 1330496 1330495 ACAAAATAAAATTAA TCCAGTTGATAGCTTTTTCTT AATTAAAAG ACAAATAAGCTATCAACTGGA TTATTTTTTAATTAC ackA 1331757 - 1330561 - | acetate kinase TERM 1631 1331475 - 1331493 + g 79 -11 -2.76171 | opp_overlap 1331469, overlap 1331477 CAGGGAAAAGTTCAC CGCCGTGT ACA ACACGGTG TCCTGTTCCATCGAT TERM 1632 1331477 - 1331491 + g 75 -10 -2.92522 | opp_overlap 1331469, overlap 1331475 GGGAAAAGTTCACCG CCGTGT ACA ACACGG TGTCCTGTTCCATCG Sca_1317 1332787 - 1331840 - | hypothetical protein TERM 1633 1332750 - 1332765 + g 74 -7.6 -3.8534 | TTGCTATCTAATTCT TGGAAC AATC GTTCCA TTATAGTTTTTTCTT TERM 1634 1332852 - 1332810 - R 81 -4.5 -5.40072 | gap 2 CCCTTCCTAAAAAAA CTGCTCATAATCAATA--AGT ACT ACTAGCACTAATTATGAGCAG TCTAATCTTATATTT Sca_1318 1333395 - 1332895 - | putative thioredoxin peroxidase TERM 1635 1333605 - 1333571 - R 100 -9.4 -5.14563 | opp_overlap 1333571 TTTTCCATTAAAAAA GATGTGTTCATCTCTT TGT ATAAGTTGAACACATC TTGTTATCCTATGAC TERM 1636 1333571 - 1333605 + r 74 -7.3 -3.87104 | opp_overlap 1333571 TTTTCCATTAAAAAA GATGTGTTCATCT CTTTGTATA AGTTGAACACATC TTGTTATCCTATGAC Sca_1319 1334387 - 1333614 - | hypothetical protein TERM 1637 1334121 - 1334103 - G 71 -5.2 -4.67353 | overlap 1334104 1334113 TGACGCAGGTAAAAA TGATGCCA AAC TGGCACCG CCCGCTGCAGCAATG TERM 1638 1334120 - 1334104 - G 73 -8.7 -3.3993 | overlap 1334103 1334113 GACGCAGGTAAAAAT GATGCCA AAC TGGCACC GCCCGCTGCAGCAAT thiI'' 1335152 - 1334421 - | truncated putative thiamine biosynthesis ATP pyrophosphatase (fragment 2) TERM 1639 1334572 - 1334589 + g 76 -6.3 -4.70659 | opp_overlap 1334572 TCAACTTTTTTAAAA TCCGGTT CCGT AACTGGA TTTTTCGGTGTGAAA thiI' 1335649 - 1335176 - | truncated putative thiamine biosynthesis ATP pyrophosphatase (fragment 1) TERM 1640 1335448 - 1335462 + g 83 -8.6 -4.23213 | opp_overlap 1335433 CACCAAACACTTTGC TGATGC GAC GCATCA TTTCTTCAATATCAG Sca_1322 1336785 - 1335646 - | hypothetical protein TERM 1641 1336886 - 1336911 + r 77 -7.6 -4.1466 | opp_overlap 1336886 TCAATACACAAAAAA TCCTGAAGCT TAAGAT AGCCTCAGGA TTTTAACGCTTAACT TERM 1642 1336911 - 1336886 - R 100 -9.8 -5.47431 | opp_overlap 1336886 TCAATACACAAAAAA TCCTGAAGCT TAAGAT AGCCTCAGGA TTTTAACGCTTAACT Sca_1323 1338625 - 1336925 - | putative septation ring formation regulator TERM 1643 1337316 - 1337344 + g 74 -4 -5.1925 | gap 1 ACACTCGTTAAATTC GAAGCAAGTAAAC GTCG GTATACTT-CTTC TTTTTTAGATTGTAC Sca_1324 1338808 - 1339182 + | truncated GAF-domain protein (fragment 1) Sca_1325 1339142 - 1339279 + | truncated GAF-domain protein (fragment 2) rpsD 1339529 - 1340134 + | 30S ribosomal protein S4 TERM 1644 1340148 - 1340175 + T 100 -16.4 -5.22312 | opp_overlap 1340151 AATAGAACTTTTCAA GCACTGCTTTCC AATT GGAGAGCAGTGC TTTTTTGATGTAAAT TERM 1645 1340172 - 1340151 - T 70 -8.7 -2.72558 | opp_overlap 1340148 AGAACTTTTCAAGCA CTGCTTTCC AATT GGAGAGCAG TGCTTTTTTGATGTA TERM 1646 1340245 - 1340204 - T 75 -4.6 -5.16572 | gap 1, opp_overlap 1340204 1340205 1340211 1340212, overlap 1340205 1340211 ATCCAATCTAAAAAA TGAGAAAGCGAG-AAACTA TTTTC TAGTTTTCTCGCTTTTCCC TCTTACTTATTCTTT TERM 1647 1340204 - 1340237 + T 70 -8.3 -3.16872 | opp_overlap 1340204 1340205 1340211, overlap 1340205 1340211 1340212 ATCCAATCTAAAAAA TGAGAAAGCGAGAAA CTAT TTTCTAGTTTTCTCG CTTTTCCCTCTTACT TERM 1648 1340244 - 1340205 - T 74 -8.1 -3.68859 | gap 1, opp_overlap 1340204 1340205 1340211 1340212, overlap 1340204 1340211 TCCAATCTAAAAAAT GAGAAAGCGAG-AAACTA TTTTC TAGTTTTCTCGCTTTTCC CTCTTACTTATTCTT TERM 1649 1340211 - 1340238 + T 79 -7.9 -4.29928 | gap 1, opp_overlap 1340211 1340205 1340204, overlap 1340204 1340205 1340212 CTAAAAAATGAGAAA GCGAG-AAACTA TTTTC TAGTTTTCTCGC TTTTCCCTCTTACTT TERM 1650 1340238 - 1340211 - T 79 -7.9 -4.3179 | gap 1, opp_overlap 1340204 1340205 1340211 1340212, overlap 1340205 1340204 CTAAAAAATGAGAAA GCGAG-AAACTA TTTTC TAGTTTTCTCGC TTTTCCCTCTTACTT Sca_1327 1341201 - 1340452 - | putative glycerophosphoryl diester phosphodiesterase Sca_1328 1341273 - 1341713 + | hypothetical protein TERM 1651 1341726 - 1341757 + F 91 -9.6 -4.05402 | opp_overlap 1341726, overlap 1341724 TAACTCACTAAGAAT GGCCAAGCAAAGTA GATT TATTTTGTTTGGTC TCTTTTTAATTAAAA TERM 1652 1342167 - 1342198 + G 81 -8.9 -4.07515 | gap 1, opp_overlap 1342167 1342166 1342169 TGCTTTAGAAGCAAG CATGGTCAATTTGG TTAAT CCAGAT-GACCATG TTGTTGTTATAGTTT Sca_1329 1341958 - 1343115 + | putative soluble hydrogenase subunit serA 1343108 - 1344700 + | D-3-phosphoglycerate dehydrogenase TERM 1653 1344705 - 1344748 + T 100 -13.4 -4.93898 | gap 1, opp_overlap 1344713, overlap 1344707 1344713 TAAGTAAATAATCAT TATAAAAACCAGCTGG-GAGA AGA TCTCTCCAGCTGGTTTTAAAA TTTTTATAATAATAT TERM 1654 1344707 - 1344746 + T 100 -16 -2.7243 | gap 1, opp_overlap 1344713, overlap 1344705 1344713 AGTAAATAATCATTA TAAAAACCAGCTGG-GAGA AGA TCTCTCCAGCTGGTTTTAA AATTTTTATAATAAT TERM 1655 1344740 - 1344713 - T 100 -15 -4.94902 | gap 1, opp_overlap 1344707 1344705 1344713 TAATCATTATAAAAA CCAGCTGG-GAGA AGA TCTCTCCAGCTGG TTTTAAAATTTTTAT TERM 1656 1344713 - 1344740 + T 100 -15 -4.32233 | gap 1, opp_overlap 1344713, overlap 1344707 1344705 TAATCATTATAAAAA CCAGCTGG-GAGA AGA TCTCTCCAGCTGG TTTTAAAATTTTTAT Sca_1331 1345873 - 1344752 - | hypothetical protein TERM 1657 1345786 - 1345772 - G 81 -7.2 -4.67904 | opp_overlap 1345771 CATTAATTTCAAAAA TTGATG ACT CATCAA AATTTCATATACTGT Sca_1332 1347481 - 1345997 - | putative PTS system IIBC component Sca_1333 1348221 - 1347613 - | hypothetical protein TERM 1658 1348735 - 1348725 - g 73 -6.8 -4.29928 | AATTAATATGCAAAA GGCT CAG AGCC TAGAAGATTTCTTTA Sca_1334 1348426 - 1349616 + | hypothetical protein TERM 1659 1349626 - 1349614 - T 70 -3.5 -5.02476 | ACACTTGGTAAAAAA TAATA TGG TATTA AAAAGGCTCTGGATA TERM 1660 1349670 - 1349631 - T 82 -7.4 -4.74132 | gap 2, opp_overlap 1349631 ATATGGTATTAAAAA GGCTCTGGATAACCTGAT ATAAAA ATCAGA--ATCCAGAGCC CCTTTTGTTTTTCAG TERM 1661 1349693 - 1349709 + T 71 -2.3 -5.4505 | TTTTTCAGTTATTTA TACTTAA CCA TAAAGTA TTTTTTCTTACCGCG tyrS 1350948 - 1349686 - | tyrosyl-tRNA synthetase TERM 1662 1351045 - 1351020 - H 100 -12 -5.93252 | TTGAAAAATAAAAAA CCCTTACAGT TCAATT ACTGTAAGGG CGCATAACATGCACG sgtA 1351323 - 1352228 + | putative transglycosylase TERM 1663 1352270 - 1352221 - T 100 -14 -4.98857 | gap 2, opp_overlap 1352221 1352217 ATTTAATGACAAAAA GACCCTGA-TAAAAGCGG-ATTAC AAAT GTAATTCCACTTTCAATCAGGGTC TTAGTTTATTTTAAT TERM 1664 1352221 - 1352270 + T 86 -9.6 -3.82857 | gap 2, opp_overlap 1352221, overlap 1352217 ATTTAATGACAAAAA GACCCTGA-TAAAAGCGG-ATTAC AAAT GTAATTCCACTTTCAATCAGGGTC TTAGTTTATTTTAAT fhs 1353952 - 1352285 - | formate-tetrahydrofolate ligase TERM 1665 1354324 - 1354302 - R 100 -9.2 -5.09225 | opp_overlap 1354306 AGCGCATTCAAAAAA GAGATAAGCT TAA AGCCTATCCC TTAAAAGTTGGTAAT acsA 1356058 - 1354346 - | acetyl-CoA synthetase TERM 1666 1355091 - 1355077 - G 71 -5 -4.61868 | CACCTACAGATAAAA CTTCAC GTA ATGAAG ATAAGTCGTATTTCT acuA 1356290 - 1356922 + | acetoin utilization protein acuC 1356935 - 1358089 + | putative acetoin utilization protein ccpA 1359153 - 1358164 - | catabolite control protein A ccpA 1359154 - 1359059 - | catabolite control protein A aroA 1360526 - 1359438 - | phospho-2-dehydro-3-deoxyheptonate aldolase / chorismate mutase TERM 1667 1360773 - 1360742 - R 100 -19 -5.29716 | opp_overlap 1360746 TTAATATAATAAAAA TAAATCAGCCTTGC CTTT GCAAGGCTGATTTA TAATCATCGCTCTTA TERM 1668 1360746 - 1360769 + r 100 -15.4 -3.99592 | opp_overlap 1360742 TATAATAAAAATAAA TCAGCCTTGC CTTT GCAAGGCTGA TTTATAATCATCGCT Sca_1345 1362162 - 1360786 - | hypothetical protein TERM 1669 1362221 - 1362185 - R 100 -14.7 -4.99043 | opp_overlap 1362184 CTCCTATAAATAAAA GCACTTAAACAAAGTTG AAT CAACCTCATTTAAGTGC AATTTGTAAGTACTA Sca_1346 1362739 - 1362299 - | hypothetical protein murC 1364123 - 1362810 - | UDP-N-Aacerylmuramate-alanine ligase Sca_1348 1367810 - 1364142 - | FtsK/SpoIIIE family protein TERM 1670 1365110 - 1365130 + g 74 -8.5 -3.66784 | opp_overlap 1365106 1365114, overlap 1365107 TTTTAGCAATATCCA TTAATAATG GTT CATTATTAA TTCTATTACCCATAG TERM 1671 1366237 - 1366256 + g 75 -9.4 -3.2048 | GAAGGTTTCAATTCT GGTTCTAA TGAT TTAGAACC TTCCTGAGATTTAAC TERM 1672 1366551 - 1366581 + g 81 -8.4 -4.18506 | TGGTTGTGCTGCTTC GGTTGATTTCGAAG ATG CTTCTGAATCAATC TTATTTTCAAACTCA TERM 1673 1367665 - 1367650 - G 82 -7.6 -4.36262 | ACATGCAGAGGAAAA CGAAAG TTGC CTTTCG GACGATTATAAATAT Sca_1349 1368435 - 1367836 - | hypothetical protein Sca_1350 1369329 - 1368451 - | hypothetical protein Sca_1351 1369733 - 1369425 - | putative thioredoxin pepA 1370831 - 1369755 - | putative glutamyl-aminopeptidase TERM 1674 1370834 - 1370848 + H 77 -7.2 -4.34737 | TTGTTAAGTCCATAT TAAGGA CCC TCCTTA TTTATTCATTAATGC Sca_1353 1370916 - 1371227 + | hypothetical protein TERM 1675 1371288 - 1371254 - T 80 -8.7 -3.70853 | opp_overlap 1371258, overlap 1371258 TTAATTACTTAATAA TCAACGATGCTTTCT AAAAA AGAAAGCATCGTTTT TTATTTTCTCTTGAT TERM 1676 1371284 - 1371258 - T 100 -13.9 -3.54902 | opp_overlap 1371258, overlap 1371254 TTACTTAATAATCAA CGATGCTTTCT AAAAA AGAAAGCATCG TTTTTTATTTTCTCT TERM 1677 1371258 - 1371284 + T 100 -13.9 -5.8901 | opp_overlap 1371254 1371258 TTACTTAATAATCAA CGATGCTTTCT AAAAA AGAAAGCATCG TTTTTTATTTTCTCT Sca_1354 1372113 - 1371289 - | metallo-beta-lactamase superfamily protein TERM 1678 1372212 - 1372193 - R 100 -8.6 -5.73563 | opp_overlap 1372193 ATCAAACCAAAAAAA CCGCATTC AATC GAATGCAG TTCATTGTTTAATGG Sca_1355 1372856 - 1372221 - | putative methyltransferase TERM 1679 1372474 - 1372490 + g 74 -4.4 -5.02074 | overlap 1372463 GAGTGATAAGTGAGA CGACGT TTCGC ATGTCG TTTTTTAGGCCATGG Sca_1356 1373358 - 1372870 - | hypothetical protein dat 1374849 - 1373995 - | D-alanine aminotransferase pepV 1376263 - 1374854 - | putative Xaa-His dipeptidase TERM 1680 1375062 - 1375097 + g 95 -8.4 -4.84359 | opp_overlap 1375067 1375079 TCCCCTGTTTGGTTA CGATATGCTTGTACAA GTGT TTGTACAAACGGATCG TTTTTATCAACATAA TERM 1681 1376456 - 1376430 - R 95 -7.3 -5.71983 | opp_overlap 1376430, overlap 1376432 TTAAGTATAAAAAAA GTGCCTTAGCT ATTAA AACTAAGGCGC TGTGATATCATATTA Sca_1359 1376891 - 1376469 - | hypothetical protein TERM 1682 1376851 - 1376831 - G 76 -6.1 -4.63218 | overlap 1376832 TTCTTGTTAATAAAA CTGCTGCAG CTG CTGCACCAA TACCTACAACTGCTT Sca_1360 1377605 - 1376910 - | RNA pseudouridine synthase TERM 1683 1377516 - 1377527 + g 76 -4.4 -5.12987 | CTTTTCATTTTTCCC GTTC ACTT GAAC TTTATTTTTCTTTAA Sca_1361 1379239 - 1377605 - | putative polysaccharide biosynthesis protein TERM 1684 1379748 - 1379771 + G 74 -4 -5.09225 | AGCCCCTTTTCAGTC TTTGATAATG AATC CATTATTGAA TTTTTTGAATCACGT Sca_1362 1379562 - 1380776 + | hypothetical protein TERM 1685 1380790 - 1380826 + T 100 -10.1 -4.43879 | opp_overlap 1380792, overlap 1380791 1380792 AAAAATCAATATAAA AATGAGCCGGGCCAGTT GAT AACTGACTCGGCTCAAA TTTTAATTAAATACT TERM 1686 1380791 - 1380825 + T 100 -13.6 -3.25604 | opp_overlap 1380792, overlap 1380790 1380792 AAAATCAATATAAAA ATGAGCCGGGCCAGTT GAT AACTGACTCGGCTCAA ATTTTAATTAAATAC TERM 1687 1380792 - 1380824 + T 100 -17.1 -2.54881 | opp_overlap 1380792, overlap 1380791 1380790 AAATCAATATAAAAA TGAGCCGGGCCAGTT GAT AACTGACTCGGCTCA AATTTTAATTAAATA TERM 1688 1380824 - 1380792 - T 100 -17.1 -5.16206 | opp_overlap 1380791 1380790 1380792 AAATCAATATAAAAA TGAGCCGGGCCAGTT GAT AACTGACTCGGCTCA AATTTTAATTAAATA Sca_1363 1381150 - 1380833 - | hypothetical protein leuS'' 1382643 - 1381171 - | truncated leucyl-tRNA synthetase (fragment 2) leuS' 1383586 - 1382561 - | truncated leucyl-tRNA synthetase (fragment 1) TERM 1689 1384065 - 1384036 - R 85 -3.7 -5.80817 | gap 1 TTTAATAGAAAAAAA CGTGCGTT-CTT TCTGTAT AAGAAACACACG TTAATTTTAATTATT Sca_1366 1385259 - 1384081 - | hypothetical protein TERM 1690 1385294 - 1385304 + H 78 -4 -5.4505 | opp_overlap 1385294 TCTATTTTTAGAATA TATG TGA CATA TTTTTTATTAAAAAA Sca_1367 1385528 - 1386484 + | hypothetical protein TERM 1691 1386863 - 1386851 - g 71 -4.9 -4.56358 | opp_overlap 1386851 CACAGCCATAGAAAA CATTT TCA AAATG CTTTCACCTGAAGGA Sca_1368 1386489 - 1387046 + | hypothetical protein TERM 1692 1387104 - 1387051 - T 100 -10.6 -5.72118 | gap 1, opp_overlap 1387055 1387058 1387064, overlap 1387056 1387058 AAAAAAGATAAAAAA CAACAGAGCAAAACGTCCGCAAA AATTAAAAA TCTGCGGACGTTTTGCTA-ATTG TTAATTATTGAAATA TERM 1693 1387055 - 1387101 + T 79 -8.1 -3.89957 | opp_overlap 1387051 1387056 1387058, overlap 1387058 1387064 AAGATAAAAAACAAC AGAGCAAAACGTCCGCAAA AATTAAAAA TCTGCGGACGTTTTGCTAA TTGTTAATTATTGAA TERM 1694 1387100 - 1387056 - T 100 -13.8 -3.97741 | opp_overlap 1387055 1387058 1387064, overlap 1387051 1387058 AGATAAAAAACAACA GAGCAAAACGTCCGCAAA AATTAAAAA TCTGCGGACGTTTTGCTA ATTGTTAATTATTGA TERM 1695 1387058 - 1387098 + T 100 -14.2 -3.0062 | opp_overlap 1387056 1387051 1387058, overlap 1387055 1387064 ATAAAAAACAACAGA GCAAAACGTCCGCAAA AATTAAAAA TCTGCGGACGTTTTGC TAATTGTTAATTATT TERM 1696 1387098 - 1387058 - T 100 -16.4 -3.54144 | opp_overlap 1387058 1387055 1387064, overlap 1387056 1387051 ATAAAAAACAACAGA GCAAAACGTCCGCAAA AATTAAAAA TCTGCGGACGTTTTGC TAATTGTTAATTATT TERM 1697 1387064 - 1387092 + T 71 -6 -4.39133 | opp_overlap 1387058 1387056 1387051, overlap 1387058 1387055 AACAACAGAGCAAAA CGTCCGCAAA AATTAAAAA TCTGCGGACG TTTTGCTAATTGTTA ldh 1388065 - 1387109 - | L-lactate dehydrogenase TERM 1698 1387412 - 1387438 + g 91 -6 -5.61881 | overlap 1387413 ATACGCTGCATCACG TGTATTTAAGAA AAT TTCTTCAATACG TTTTTCTTTTTCAGG TERM 1699 1387413 - 1387437 + g 71 -7.3 -3.95502 | overlap 1387412 TACGCTGCATCACGT GTATTTAAGAA AAT TTCTTCAATAC GTTTTTCTTTTTCAG TERM 1700 1388247 - 1388220 - R 90 -4.8 -5.69023 | opp_overlap 1388220 AAAACATTAAAAAAA CCAGCAACACAT TTGA AAAAGTTGCTGG TTACTCCATTTTAAA Sca_1370 1389088 - 1388258 - | putative lysophospholipase Sca_1371 1389344 - 1390339 + | hypothetical protein TERM 1701 1390353 - 1390389 + T 83 -6.9 -5.11033 | gap 2, opp_overlap 1390353 AAATAAAAATAAAAA GGAAGAAAC-CA-AGTT ATCAA AACTCTGTGTTTCTTCC TTTTTTAAAGTTATA TERM 1702 1390389 - 1390353 - T 95 -6.9 -5.77734 | gap 2, opp_overlap 1390353 AAATAAAAATAAAAA GGAAGAAAC-CA-AGTT ATCAA AACTCTGTGTTTCTTCC TTTTTTAAAGTTATA ribH 1390866 - 1390408 - | 6,7-dimethyl-8-ribityllumazine synthase ribA 1392086 - 1390899 - | riboflavin biosynthesis protein ribB 1392728 - 1392096 - | riboflavin synthase alpha chain ribD 1393784 - 1392735 - | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase TERM 1703 1393833 - 1393805 - R 100 -13.9 -5.15634 | CACCTCATTAAAAAA CCCGCTGCCAAAT AAA ATTGGGCAACGGG AAAGAATTTATGATG Sca_1376 1395671 - 1394190 - | hypothetical protein TERM 1704 1395792 - 1395739 - R 100 -15.8 -5.11063 | opp_overlap 1395742 1395747 1395748 1395753 1395756, overlap 1395743 ATTATGCAACAAAAA TAAATAAAGCGAAACAATTAAAAC TGTTTT GTTTTAATTGTTTCGCTTTAATAA TTATAATCATCTATT TERM 1705 1395742 - 1395789 + r 100 -17.5 -2.8751 | opp_overlap 1395739 1395743, overlap 1395747 1395748 1395753 1395756 ATGCAACAAAAATAA ATAAAGCGAAACAATTAAAAC TGTTTT GTTTTAATTGTTTCGCTTTAA TAATTATAATCATCT TERM 1706 1395788 - 1395743 - R 100 -21 -5.05606 | opp_overlap 1395742 1395747 1395748 1395753 1395756, overlap 1395739 TGCAACAAAAATAAA TAAAGCGAAACAATTAAAAC TGTTTT GTTTTAATTGTTTCGCTTTA ATAATTATAATCATC TERM 1707 1395747 - 1395784 + r 100 -17.4 -3.87346 | opp_overlap 1395743 1395739, overlap 1395742 1395748 1395753 1395756 ACAAAAATAAATAAA GCGAAACAATTAAAAC TGTTTT GTTTTAATTGTTTCGC TTTAATAATTATAAT TERM 1708 1395753 - 1395778 + r 76 -7.8 -3.87551 | opp_overlap 1395743 1395739, overlap 1395748 1395747 1395742 1395756 ATAAATAAAGCGAAA CAATTAAAAC TGTTTT GTTTTAATTG TTTCGCTTTAATAAT Sca_1377 1396654 - 1395809 - | hypothetical protein TERM 1709 1396366 - 1396382 + g 80 -6.7 -4.81551 | opp_overlap 1396378 ACTGATATCTTTGAA CTTTATT ATT AATAAAG TTTTTACTATCCATC TERM 1710 1396920 - 1396880 - R 88 -7.9 -4.9251 | opp_overlap 1396879 1396880 1396883 AACAAAAAATTAAAA TAACCTGTTT-CGCACAGC TTATT ACTGT-CGTAAACAGGTTA CATTTTATTCTTTAT Sca_1378 1397195 - 1396974 - | hypothetical protein TERM 1711 1398228 - 1398202 - g 85 -3.8 -5.61596 | opp_overlap 1398207 ACGGGTATAAAAAAA GAAAATCAGC AAACACG GCTGATTTTT ACTAATGGTAAGCAT Sca_1379 1397398 - 1398333 + | hypothetical protein Sca_1380 1398769 - 1398317 - | hypothetical protein TERM 1712 1398804 - 1398856 + r 79 -7.3 -4.44819 | gap 2, opp_overlap 1398806, overlap 1398806 TGATTTACATTAAAA AAGAGGCGGAAATAG-C-TTAAGAC AATCA GACTTAATGACTATTTCTGCCTCTA TTTTAATATATTCTG TERM 1713 1398854 - 1398806 - R 90 -7.7 -5.22312 | gap 2, opp_overlap 1398806 1398804 ATTTACATTAAAAAA GAGGCGGAAATAG-C-TTAAGAC AATCA GACTTAATGACTATTTCTGCCTC TATTTTAATATATTC TERM 1714 1398806 - 1398854 + r 86 -9.9 -3.816 | gap 2, opp_overlap 1398806, overlap 1398804 ATTTACATTAAAAAA GAGGCGGAAATAG-C-TTAAGAC AATCA GACTTAATGACTATTTCTGCCTC TATTTTAATATATTC Sca_1381 1399613 - 1398897 - | putative transaldolase TERM 1715 1399273 - 1399286 + g 78 -3.9 -5.30155 | opp_overlap 1399273 ACATTCACTTGAACA TTATC AGCT GATAA TTTTTTAATTAATGG TERM 1716 1399946 - 1399960 + G 76 -5.8 -4.60041 | overlap 1399935 TAAATGCAATCATCT TAATTG TTG CAATTA TTTTTGCAGATAAAT Sca_1382 1399798 - 1400103 + | hypothetical protein Sca_1383 1400174 - 1400545 + | hypothetical protein Sca_1384 1400550 - 1400894 + | hypothetical protein TERM 1717 1400898 - 1400936 + T 95 -8.4 -5.36314 | gap 1, opp_overlap 1400900, overlap 1400900 ATTGCTCATTAATAA AACACACTTGAGACGTA TGAAAT TACGT-TCAAGTGTGTC TTTTTTAATCTTTTA TERM 1718 1400934 - 1400900 - T 100 -11 -4.71426 | gap 1, opp_overlap 1400898 1400900 TGCTCATTAATAAAA CACACTTGAGACGTA TGAAAT TACGT-TCAAGTGTG TCTTTTTTAATCTTT TERM 1719 1400900 - 1400934 + T 100 -11 -4.27753 | gap 1, opp_overlap 1400900, overlap 1400898 TGCTCATTAATAAAA CACACTTGAGACGTA TGAAAT TACGT-TCAAGTGTG TCTTTTTTAATCTTT Sca_1385 1401864 - 1400941 - | hypothetical protein Sca_1386 1402717 - 1401875 - | hypothetical protein TERM 1720 1402669 - 1402683 + g 81 -5.6 -5.19998 | opp_overlap 1402670, overlap 1402670 CACGGAATGTACCTA AGCCGA CAA TCGGCA TTTTATTTTCGTTAT TERM 1721 1402682 - 1402670 - G 70 -9.1 -3.10112 | opp_overlap 1402669 1402670 ACGGAATGTACCTAA GCCGA CAA TCGGC ATTTTATTTTCGTTA TERM 1722 1402670 - 1402682 + g 78 -9.1 -3.69559 | opp_overlap 1402670, overlap 1402669 ACGGAATGTACCTAA GCCGA CAA TCGGC ATTTTATTTTCGTTA TERM 1723 1402835 - 1402807 - H 71 -7.4 -3.83026 | opp_overlap 1402807 TGGTTCTATACTAAA TCGGACTGGTGA GAAAA TCACTCGTCCGA TTTTTTGATATAAAA TERM 1724 1402807 - 1402835 + H 100 -9.6 -5.21709 | opp_overlap 1402807 TGGTTCTATACTAAA TCGGACTGGTGA GAAAA TCACTCGTCCGA TTTTTTGATATAAAA tnp' 1402915 - 1403034 + | truncated transposase (fragment 1) TERM 1725 1403995 - 1403978 - g 71 -9.1 -3.26366 | overlap 1403976 TACAGGCAATCAACA TGGGGAC CATC GCCCCCA AACTTAAAATTGCCG TERM 1726 1404205 - 1404235 + G 89 -11.2 -4.05788 | opp_overlap 1404205 TCAAATCCTAAAAAA GAGATTAAGCAGCT AAA AGCTGCCTAACCTC TTTAATTTGAGCCAC TERM 1727 1404235 - 1404205 - g 100 -15.6 -5.12707 | opp_overlap 1404205 TCAAATCCTAAAAAA GAGATTAAGCAGCT AAA AGCTGCCTAACCTC TTTAATTTGAGCCAC tnp'' 1403101 - 1404231 + | truncated transposase (fragment 2) TERM 1728 1404321 - 1404291 - T 100 -14.2 -5.46706 | opp_overlap 1404291 ACTTTAAAACAAAAA GCACTATCCACGTA ATA TACGTAAATAGTGC TTTTACTCATTAATT TERM 1729 1404291 - 1404321 + T 100 -9.8 -4.37013 | opp_overlap 1404291 ACTTTAAAACAAAAA GCACTATCCACGTA ATA TACGTAAATAGTGC TTTTACTCATTAATT Sca_1388 1405236 - 1404331 - | hypothetical protein metK 1406524 - 1405328 - | S-adenosylmethionine synthetase TERM 1730 1406585 - 1406617 + H 83 -10 -3.65353 | gap 1, opp_overlap 1406585 AGCTCAAATTAAAAA GGGCTTTC-CACTAT AAAC ATAGAGAGAAAGCCC TTTGACGTCCTTTCG TERM 1731 1406617 - 1406585 - H 100 -10 -4.99134 | gap 1, opp_overlap 1406585 AGCTCAAATTAAAAA GGGCTTTC-CACTAT AAAC ATAGAGAGAAAGCCC TTTGACGTCCTTTCG pckA 1406911 - 1408503 + | phosphoenolpyruvate carboxykinase TERM 1732 1408520 - 1408547 + T 100 -14.2 -4.48741 | opp_overlap 1408508 1408520 1408528 AAATGCATTTTCAAA CCCGGAAAGGAT TCAT ATCCATTCCGGG TTTTCTCATACCTTA TERM 1733 1408547 - 1408520 - T 100 -14.2 -3.58536 | opp_overlap 1408520, overlap 1408508 1408528 AAATGCATTTTCAAA CCCGGAAAGGAT TCAT ATCCATTCCGGG TTTTCTCATACCTTA Sca_1391 1409308 - 1408553 - | hypothetical protein Sca_1392 1409789 - 1409316 - | hypothetical protein TERM 1734 1409552 - 1409531 - G 70 -8.9 -2.94099 | opp_overlap 1409529 1409527, overlap 1409533 CGTTCGGATGATATA CAGTATATT GCGC AATATACTG CATATCTTGAACAAT TERM 1735 1410106 - 1410064 - g 71 -7 -3.86015 | opp_overlap 1410052 CATCCGCTTCATAAA GGTGGTTTCGATCCTGTTCC TTT GAAAAAGGACAATAACCACC AACATTGCGAACACC Sca_1393 1409878 - 1410132 + | hypothetical protein Sca_1394 1411136 - 1410129 - | hypothetical protein TERM 1736 1410164 - 1410186 + g 73 -7 -4.04806 | TTTTGTTGATTACTG GGGGCACA AATTCAA TGTGTCCC TTGTTTAATATACCG TERM 1737 1410699 - 1410718 + g 73 -2 -5.33785 | overlap 1410701 ATCTGACCATTTCAA CTTAACCC TTTT GGGTTCTG TTTTTTGTAGTACTT menE 1412528 - 1411140 - | O-succinylbenzoic acid--CoA ligase TERM 1738 1412639 - 1412610 - R 100 -12.3 -3.95435 | opp_overlap 1412614 1412615, overlap 1412614 TGTTTTAAAACATAA TAAACCCGAGAGT TGAT ACTCCCGGATTTA CAGTTTAATTAAATA TERM 1739 1412635 - 1412614 - R 89 -8.7 -4.57063 | opp_overlap 1412614 1412615, overlap 1412610 TTAAAACATAATAAA CCCGAGAGT TGAT ACTCCCGGA TTTACAGTTTAATTA Sca_1396 1413366 - 1412644 - | hypothetical protein TERM 1740 1413903 - 1413920 + G 88 -4.9 -5.62288 | CATTCCACTCTTGTT TGTGTTG AATG TAACACA TTTTTCTTTTATTGC Sca_1397 1413550 - 1414074 + | hypothetical protein Sca_1398 1414342 - 1414980 + | hypothetical protein TERM 1741 1415069 - 1415031 - T 100 -12 -4.75174 | gap 1 TATCTAATTCAAAAA CCCCTTTGCTTTCATGT AATAAG ACA-GAAAACAAAGGGG TCTAAAATTGAGCGG TERM 1742 1415226 - 1415203 - T 100 -12.6 -5.72053 | opp_overlap 1415203 TAATTAAATAAAAAA TCAGAAACGA TACT TCGTTTCTGA TTGAATGACTCCTAC TERM 1743 1415203 - 1415226 + T 100 -12.6 -3.08464 | opp_overlap 1415203 TAATTAAATAAAAAA TCAGAAACGA TACT TCGTTTCTGA TTGAATGACTCCTAC TERM 1744 1415311 - 1415298 - T 70 -8.1 -3.14881 | TAACCGCTTGACCAA GGAGC CATG GCTCC ACAGGTAGGACTCGA TERM 1745 1415421 - 1415441 + T 70 -6.1 -4.19506 | opp_overlap 1415421 1415423 GAATCGAACCCACAA CATCAGCTT GGA AGGCTGAGG TTTTGCCATTAAACT TERM 1746 1416197 - 1416164 - T 74 -3.3 -5.38054 | gap 1 TTTCATAAATAAAAA GATCGAAA-AAAGC ATTTATA GCTTTATTCCGACC TTTTTGATGCTGAAT Sca_1399 1416842 - 1416219 - | hypothetical protein TERM 1747 1416468 - 1416482 + g 78 -3.6 -5.25772 | overlap 1416470 TGAGTGCATCATTGT TTTGAT TGC ATCAGA TTTTTCTTCTGGTTT TERM 1748 1417004 - 1416986 - R 100 -9.6 -5.45802 | opp_overlap 1416985 1416986 1416988 TTGCGAAAATAAAAA CACCAACA TAA TGCTGGTG CTTTATCAATTACTC Sca_1400 1417550 - 1417014 - | hypothetical protein TERM 1749 1417323 - 1417346 + g 70 -5.4 -4.43309 | opp_overlap 1417315 ATCAAAATCATGTTG GCACATAA TTAAACGT TTATGTGC TTTTCCTTGAGGTTC TERM 1750 1417395 - 1417406 + g 74 -3 -5.2853 | TTTGCTTGTAGAATT GATT GCAT AATC TTTTGTTTTTAAGTG nifS 1418640 - 1417537 - | putative Cysteine desulfurase/aminotransferase,class V nadB 1418742 - 1420085 + | putative L-aspartate oxidase nadC 1420266 - 1421099 + | nicotinate-nucleotide pyrophosphorylase homolog,carboxylating nadA 1421099 - 1422199 + | quinolinate synthetase complex, subunit A TERM 1751 1422234 - 1422267 + T 100 -11.2 -4.24443 | opp_overlap 1422221 1422239, overlap 1422239 AATTTAATCCACATT AAAAATGACATGCC CGCTCA GGCATGTCATTTTA TTATTTTGACATTTT TERM 1752 1422239 - 1422262 + T 100 -11.1 -5.093 | opp_overlap 1422239, overlap 1422234 AATCCACATTAAAAA TGACATGCC CGCTCA GGCATGTCA TTTTATTATTTTGAC TERM 1753 1422262 - 1422239 - T 100 -11.8 -4.82154 | opp_overlap 1422234 1422239 AATCCACATTAAAAA TGACATGCCC GCTC AGGCATGTCA TTTTATTATTTTGAC Sca_1405 1422825 - 1422268 - | hypothetical protein hemY 1424445 - 1423045 - | protoporphyrinogen oxidase hemH 1425394 - 1424438 - | ferrochelatase TERM 1754 1425282 - 1425295 + g 70 -3.1 -5.0538 | overlap 1425283 TTTAAATCTTGCACT TCTTC TGGT GAAGG TTTTTTACCGTGACG hemE 1426462 - 1425425 - | uroporphyrinogen decarboxylase TERM 1755 1425634 - 1425648 + g 71 -4.2 -4.82863 | GAATCGTCTTTGCTA CACCAG AAT CTGATG TTTCTTTTATCGTTG Sca_1409 1426771 - 1427274 + | hypothetical protein TERM 1756 1427289 - 1427333 + T 85 -11.1 -3.1478 | gap 1, opp_overlap 1427294, overlap 1427294 ATGCTGTAGTTAACT AAAAACAACGCCAA-TTAAC TTTTAT GTTAATTTGGCGTTGTTTTA TGTTAATCACGTAAT TERM 1757 1427294 - 1427328 + T 100 -11 -4.70583 | gap 1, opp_overlap 1427294, overlap 1427289 GTAGTTAACTAAAAA CAACGCCAA-TTAAC TTTTAT GTTAATTTGGCGTTG TTTTATGTTAATCAC TERM 1758 1427328 - 1427294 - T 100 -11 -4.88407 | gap 1, opp_overlap 1427289 1427294 GTAGTTAACTAAAAA CAACGCCAA-TTAAC TTTTAT GTTAATTTGGCGTTG TTTTATGTTAATCAC ecsB 1428562 - 1427336 - | putative ABC transporter ecsB TERM 1759 1428363 - 1428349 - G 73 -5.6 -4.67607 | opp_overlap 1428349 GTGGGAATAAAGAAA TGGCAG CAA CAGCCA TACTTGCAAAAAGTG ecsA 1429296 - 1428559 - | ABC transporter ecsA TERM 1760 1428650 - 1428665 + g 70 -3.2 -4.91873 | CGTAATTCATCTAAG TTGCCG AATG CTGCAA TTTTTCCTTCGTCTA hit 1429433 - 1429858 + | hit-like protein involved in cell-cycle regulation TERM 1761 1430365 - 1430334 - g 73 -5.8 -4.38503 | GTAAACAAGAAACAA TTCACCACCAGCAG TCAC CTGCAGCTAGCGAA GCAAGTTCAAATGAA Sca_1413 1429928 - 1430404 + | hypothetical protein TERM 1762 1430417 - 1430447 + F 90 -7.6 -5.28481 | opp_overlap 1430417, overlap 1430419 TAAAACTGTATTTAA TTCGACCAAATCCA CTG TGATTTTGGTCGGA TTTTTTAATTAAATC TERM 1763 1430896 - 1430883 - g 70 -5.3 -4.5032 | opp_overlap 1430883 CATATTAAGAAGAAA CGTTT ATCT AAACG TGCTTGGATACCAAT Sca_1414 1430634 - 1431200 + | hypothetical protein TERM 1764 1431209 - 1431232 + F 100 -9.6 -5.38497 | opp_overlap 1431209 CAATTAATCAATTTA GAGATTCGAC TCAT GTCGGGTCTC TTTTTTAATTTCGGT TERM 1765 1431442 - 1431453 + G 73 -5.8 -4.41047 | TTATGATTCCTGTAA CAGC AAGC GCTG TTTTACTTGGCGCAT prsA1 1431408 - 1432400 + | putative foldase protein prsA 1 TERM 1766 1432423 - 1432450 + T 100 -10 -4.99435 | opp_overlap 1432423 TAAAGTACAAAAAAA CCTGAATTCC AATCATAA GGAATTCAGG TTTTTCATTGTTAAA TERM 1767 1432450 - 1432423 - T 100 -10 -5.75599 | opp_overlap 1432423 TAAAGTACAAAAAAA CCTGAATTCC AATCATAA GGAATTCAGG TTTTTCATTGTTAAA Sca_1416 1433419 - 1432478 - | hypothetical protein Sca_1417 1436352 - 1433419 - | hypothetical protein Sca_1418 1437539 - 1436352 - | hypothetical protein TERM 1768 1437713 - 1437691 - R 100 -15 -5.77632 | opp_overlap 1437691 AAAAGTATAAAAAAA CTGCTGAACA AAT TGTTCAGCAG TTTTTAACTACAACC TERM 1769 1437691 - 1437713 + r 100 -15 -4.65895 | opp_overlap 1437691 AAAAGTATAAAAAAA CTGCTGAACA AAT TGTTCAGCAG TTTTTAACTACAACC Sca_1419 1438084 - 1437740 - | hypothetical protein Sca_1420 1439372 - 1438242 - | hypothetical protein TERM 1770 1439485 - 1439458 - R 90 -7.1 -5.51165 | opp_overlap 1439458 AAAATCGCAAAAAAA GATTGATGACC TTCTGT AGCCATCAATC TTTTTATTACTTACT TERM 1771 1439458 - 1439485 + r 75 -4.2 -5.20534 | opp_overlap 1439458 AAAATCGCAAAAAAA GATTGATGAC CTTCTGTA GCCATCAATC TTTTTATTACTTACT Sca_1421 1440029 - 1439565 - | hypothetical protein TERM 1772 1439895 - 1439917 + g 70 -3.4 -4.93877 | overlap 1439897 GTTCGGCAACACACG CTCTTTTTCA ATT TGAACAAGTG TTTTCTTTGATAAGC TERM 1773 1440291 - 1440305 + r 72 -4.2 -5.07053 | CTTCATTCTCTATTA TGGCGA ATA TCGACA TTTTTTCAAGTCATT TERM 1774 1440422 - 1440390 - R 90 -7.1 -5.5604 | opp_overlap 1440390 1440392 1440396, overlap 1440392 TTAACCAACAAAAAA TACTAAGGTACAGTT TAT AACTGCATCTTAGTC TTAAATGTTAATTTG TERM 1775 1440392 - 1440420 + r 78 -9.7 -3.16618 | opp_overlap 1440390 1440392, overlap 1440390 1440396 AACCAACAAAAAATA CTAAGGTACAGTT TAT AACTGCATCTTAG TCTTAAATGTTAATT TERM 1776 1440420 - 1440392 - R 100 -9.7 -4.40357 | opp_overlap 1440392 1440390 1440396, overlap 1440390 AACCAACAAAAAATA CTAAGGTACAGTT TAT AACTGCATCTTAG TCTTAAATGTTAATT Sca_1422 1441710 - 1440430 - | putative proton/glutamate symporter family protein TERM 1777 1441379 - 1441389 + g 73 -6.8 -4.25104 | ATTAAATCAGAATGT CCAG CAC CTGG TTTTACTGCCAAGGC TERM 1778 1441811 - 1441772 - R 85 -6 -5.35224 | opp_overlap 1441777, overlap 1441773 1441774 TTCAGAAAAAGAAAA TGGTATTTTATTTGTAAA ATTA TTCACAAATAAAATACGT GTACACAAATGCTGT TERM 1779 1441810 - 1441773 - R 84 -9.5 -3.79508 | opp_overlap 1441777, overlap 1441772 1441774 TCAGAAAAAGAAAAT GGTATTTTATTTGTAAA ATTA TTCACAAATAAAATACG TGTACACAAATGCTG TERM 1780 1441809 - 1441774 - R 100 -13 -2.86078 | opp_overlap 1441777, overlap 1441773 1441772 CAGAAAAAGAAAATG GTATTTTATTTGTAAA ATTA TTCACAAATAAAATAC GTGTACACAAATGCT Sca_1423 1442488 - 1441859 - | putative two-component response regulator Sca_1424 1443618 - 1442494 - | putative two-component sensor histidine kinase TERM 1781 1442946 - 1442967 + g 72 -3.7 -5.03314 | overlap 1442947 CAGCTTGTTGGCTGG TCGTTTCAA TAGT TTGAAGCGC TTTTTTAGCAATAGG TERM 1782 1443003 - 1443014 + g 73 -5.8 -4.47707 | opp_overlap 1443003, overlap 1442999 1443013 TCGTCATTCCATAAG CAGC ATGT GCTG TTATTTTTAGTGAAA Sca_1425 1443756 - 1444583 + | hypothetical protein TERM 1783 1444626 - 1444581 - T 100 -9.9 -4.79223 | gap 1, opp_overlap 1444586 1444588 1444591, overlap 1444588 TTAGATGATGAAAAA TAACAAAGAAGCCGTGCTCTCC TCA AAAGAGCACGGCTTCTAT-TAA TGTTGATTAAGCGTT TERM 1784 1444586 - 1444622 + T 100 -15.3 -3.42147 | opp_overlap 1444581 1444588, overlap 1444588 1444591 TGATGAAAAATAACA AAGAAGCCGTGCTCT CCTCAAA AGAGCACGGCTTCTA TTAATGTTGATTAAG TERM 1785 1444588 - 1444620 + T 100 -17.9 -3.27602 | opp_overlap 1444588 1444581, overlap 1444586 1444591 ATGAAAAATAACAAA GAAGCCGTGCTCT CCTCAAA AGAGCACGGCTTC TATTAATGTTGATTA TERM 1786 1444620 - 1444588 - T 100 -19.3 -4.78157 | opp_overlap 1444586 1444588 1444591, overlap 1444581 ATGAAAAATAACAAA GAAGCCGTGCTCTCC TCA AAAGAGCACGGCTTC TATTAATGTTGATTA TERM 1787 1444591 - 1444617 + T 100 -13.8 -3.76169 | opp_overlap 1444588 1444581, overlap 1444588 1444586 AAAAATAACAAAGAA GCCGTGCTCT CCTCAAA AGAGCACGGC TTCTATTAATGTTGA citG 1446021 - 1444633 - | fumarate hydratase, class-II TERM 1788 1445494 - 1445505 + g 70 -3 -5.24531 | TTTAATAATATCGTG GAAA TCTT TTTC TTTTTTCTCGAAAGT TERM 1789 1446187 - 1446157 - R 83 -3.4 -5.8187 | gap 1 TATGTAACAAAAAAA CTGAGC-AGAAAC TTTTAC GTCTCTCACTCAG CAGTTTTTCAGTCTA Sca_1427 1446611 - 1446195 - | hypothetical protein TERM 1790 1446729 - 1446687 - R 100 -8.7 -5.63012 | gap 1 AAAAACAAACAAAAA TCCGAC-AAGTAATTGGT TAAGAAAC ACCAAGTACTTTGTCGGA AAATCACCACTTTAT Sca_1428 1447356 - 1446757 - | hypothetical protein Sca_1429 1448073 - 1447603 - | putative rRNA methylase Sca_1430 1449207 - 1448080 - | hypothetical protein glnQ 1450000 - 1449275 - | glutamate ABC transporter ATP-binding protein Sca_1432 1451468 - 1449993 - | hypothetical protein TERM 1791 1451603 - 1451580 - R 100 -13.2 -5.38047 | opp_overlap 1451578 TATTCACATAAAAAA GCCCATCTGC AAAA ACAGATGGGC AACTTCGTAACTAAT Sca_1433 1452660 - 1451614 - | hypothetical protein TERM 1792 1454547 - 1454563 + r 87 -10.9 -3.22475 | opp_overlap 1454524, overlap 1454545 TCGAACCCGCGACCC CGACCTT GGC AAGGTCG TATTCTACCGCTGAA TERM 1793 1457751 - 1457770 + r 90 -10.8 -3.66803 | opp_overlap 1457750 1457749, overlap 1457762 GAGTGTCCTACAACC CCAATGAG CAAG CTCATTGG TTTGGGCTCTTCCCG TERM 1794 1458073 - 1458087 + r 70 -8.6 -2.56715 | overlap 1458080 ATGTGAGTAATCTTC TTTGCC ATC GGCAAA TCGATTACTAGCGAT TERM 1795 1458441 - 1458458 + r 70 -8.5 -3.18065 | GCCACGTTAATCCGT CAGTTTC TGTT GAAACTG TTCCGTATATCTCCT TERM 1796 1459393 - 1459411 + r 71 -8.8 -2.75963 | overlap 1459392 AGTTTCCAATGACCC TCCACGGT TGA GCCGTGGG CTTTCACATCAGACT TERM 1797 1459824 - 1459845 + r 74 -8.8 -3.224 | opp_overlap 1459834, overlap 1459823 AAAACCGTCTTTCAT TGCAGAAC CATGCA GTTCTGCA TATTATCCGGCATTA TERM 1798 1459953 - 1459938 - R 71 -9 -2.73875 | opp_overlap 1459937 1459940, overlap 1459940 CCGCCGCTAACATCA GAGGAG CAAG CTCCTC ATCTGTTCGCTCGAC TERM 1799 1460076 - 1460087 + r 71 -5.8 -4.39696 | opp_overlap 1460076 TAATTTGTTTTAAAA CGTC CTAA GACG TTTGTTAATTTGGAA TERM 1800 1460292 - 1460302 + r 70 -4 -4.87893 | ATAGTAAAATTTACA CTTT GTT AAAG TTTTTAATTCAACTT TERM 1801 1460638 - 1460615 - R 86 -5.4 -5.60864 | gap 1, opp_overlap 1460615 TATATACGAAAAAAA GACTG-AACTT TTA AAGTTACAGCC TTTTCAAACACAATC perR 1461129 - 1460674 - | transcription regulator Fur family Sca_1435 1462174 - 1461224 - | hypothetical protein Sca_1436 1462635 - 1462180 - | putative bacterioferritin comigratory protein TERM 1802 1463068 - 1463052 - g 90 -3.7 -5.86061 | overlap 1463065 1463066 CTTCACTAAAAAAAA TGCGTTT TGT AAACTCA GGAACTGAAGCAGTC gsaB 1462718 - 1464007 + | glutamate-1-semialdehyde aminotransferase Sca_1438 1464117 - 1465217 + | hypothetical protein TERM 1803 1465260 - 1465226 - T 100 -12.2 -5.88565 | opp_overlap 1465226 TTTATAATAAAAAAA GGAGTATAGCCGCAAA TTA CTAGCGGTTATACTCC TTTTTTATAGATCTT TERM 1804 1465226 - 1465260 + T 100 -13.7 -5.30686 | opp_overlap 1465226 TTTATAATAAAAAAA GGAGTATAGCCGCAA ATTAC TAGCGGTTATACTCC TTTTTTATAGATCTT Sca_1439 1467001 - 1465265 - | ABC transporter, ATP-binding protein TERM 1805 1466824 - 1466805 - G 76 -5 -4.94811 | opp_overlap 1466821 GCAAAAATAAATAAA GCAATCCC AATT GAAATTGC TAAGCGAATTATTTT Sca_1440 1467719 - 1467174 - | hypothetical protein TERM 1806 1467229 - 1467242 + g 76 -2.3 -5.48063 | opp_overlap 1467225, overlap 1467202 ACCTTTATAAAGTCT GGAGC AAAC GGTCC TTTTTTCTGTTCAAT Sca_1441 1468841 - 1467783 - | putative A/G-specific adenine glycosylase Sca_1442 1468946 - 1469929 + | hypothetical protein TERM 1807 1469938 - 1469962 + T 100 -11.5 -5.11937 | opp_overlap 1469938 ACATTAATAAAAAAA CGGAGTGGA AACCAAA TCCACTCCG TTTTTTCAGGTTGTT TERM 1808 1469962 - 1469938 - T 100 -11.5 -5.85737 | opp_overlap 1469938 ACATTAATAAAAAAA CGGAGTGGA AACCAAA TCCACTCCG TTTTTTCAGGTTGTT Sca_1443 1470819 - 1469968 - | hypothetical protein TERM 1809 1470143 - 1470127 - G 80 -2.3 -5.65496 | CACTAAAAAGAAAAA GTGATAT GGT ATATTAC CTAAACTGTTAATCC TERM 1810 1470272 - 1470258 - G 70 -2.8 -5.2204 | CAGAAGGAATAAAAA TGATAG GAA CTGTCA AAAACATCACTGCAA Sca_1444 1472356 - 1470830 - | hypothetical protein Sca_1445 1472663 - 1472373 - | hypothetical protein Sca_1446 1473483 - 1472680 - | putative regulatory protein TERM 1811 1473117 - 1473130 + g 81 -5.3 -5.12707 | GACCTTTATCTGTAG TACGA ATCA TCGTA TTTTTTAAACTTTCA TERM 1812 1473646 - 1473622 - R 90 -6.6 -5.52079 | gap 1, opp_overlap 1473622 AGATCAAAATAAAAA CAGATAAG-CT TTTC AGACTTATCTG TGACTTATAATAGCT Sca_1447 1474476 - 1473664 - | monofunctional glycosyltransferase TERM 1813 1474644 - 1474621 - R 100 -11.8 -5.14477 | opp_overlap 1474618 1474614 1474621 TAGATATGTAAAAAA CGAGCATTTC AAAA GAAATGCCCG TCAGTTATTTAAATA TERM 1814 1474621 - 1474644 + r 76 -9.6 -2.71815 | opp_overlap 1474621, overlap 1474618 1474614 TAGATATGTAAAAAA CGAGCATTTC AAAA GAAATGCCCG TCAGTTATTTAAATA Sca_1448 1475196 - 1474669 - | hypothetical protein Sca_1449 1475494 - 1475321 - | hypothetical protein TERM 1815 1476340 - 1476330 - g 78 -4 -5.28176 | CTTATTTAGAAAAAA TTCA TAA TGAA GTCGTACATGATATG Sca_1450 1475717 - 1476865 + | hypothetical protein TERM 1816 1476871 - 1476910 + T 100 -16.7 -3.42809 | opp_overlap 1476876, overlap 1476876 CCAACAATAATTTCA AAAAATAGAGGTTGCGC TTTTTT GCGCAACCTCTATTTTG TCTCTTTATTGGATA TERM 1817 1476905 - 1476876 - T 100 -16.6 -5.11937 | opp_overlap 1476871 1476876 AATAATTTCAAAAAA TAGAGGTTGCGC TTTTTT GCGCAACCTCTA TTTTGTCTCTTTATT TERM 1818 1476876 - 1476905 + T 100 -16.6 -4.77778 | opp_overlap 1476876, overlap 1476871 AATAATTTCAAAAAA TAGAGGTTGCGC TTTTTT GCGCAACCTCTA TTTTGTCTCTTTATT Sca_1451 1477437 - 1476916 - | hypothetical protein TERM 1819 1477434 - 1477455 + g 73 -2.3 -5.34655 | gap 1 TTTTTTCTCTATCTT CCACAATAGG TCT CCTTTT-TGG TTTTATTTTTAATTA ampS 1478706 - 1477468 - | aminopeptidase ampS Sca_1453 1478951 - 1478745 - | hypothetical protein TERM 1820 1479029 - 1479019 - H 79 -5.4 -5.26875 | opp_overlap 1479019 1479019 CTTTTAACGAAAAAA GAGA AAT TCTC TCTTTAGATATGAGC Sca_1454 1479187 - 1479651 + | hypothetical protein Sca_1455 1479659 - 1479955 + | hypothetical protein Sca_1456 1480074 - 1481150 + | hypothetical protein TERM 1821 1481159 - 1481188 + F 86 -6.5 -5.47821 | overlap 1481161 TTCTTAAGCAATTTC AAGATGCGCAATA CTAT TGTTGTGCATCTA TTTTTTTGGATAAAT TERM 1822 1481161 - 1481186 + F 100 -9.1 -4.37763 | overlap 1481159 CTTAAGCAATTTCAA GATGCGCAATA CTAT TGTTGTGCATC TATTTTTTTGGATAA Sca_1457 1481360 - 1481938 + | hypothetical protein TERM 1823 1481951 - 1481987 + T 74 -8.1 -3.68073 | opp_overlap 1481956, overlap 1481956 TAAATATAGAACGTT AAAAAGCTGAACCCA TTTCATT TGGGCTCAGCTTTTC TTATTGAATCAAATC TERM 1824 1481956 - 1481982 + T 88 -8 -4.91084 | opp_overlap 1481956, overlap 1481951 ATAGAACGTTAAAAA GCTGAACCCA TTTCATT TGGGCTCAGC TTTTCTTATTGAATC TERM 1825 1481982 - 1481956 - T 100 -10.2 -4.69622 | opp_overlap 1481951 1481956 ATAGAACGTTAAAAA GCTGAACCCA TTTCATT TGGGCTCAGC TTTTCTTATTGAATC vraR 1482605 - 1481988 - | putative response regulator vraS 1483650 - 1482607 - | histidine kinase sensor Sca_1460 1484348 - 1483647 - | hypothetical protein TERM 1826 1483868 - 1483878 + g 72 -4 -4.99568 | opp_overlap 1483868 TGAAATGACGCACAA CAAT TGT ATTG TTTTCTTTAATATTG Sca_1461 1484759 - 1484364 - | hypothetical protein TERM 1827 1484652 - 1484669 + g 85 -4.1 -5.67283 | opp_overlap 1484652 TAAATATTGAATATA CTGCTTT GTTG AATGCAG TTTTTTATTTAAGTT TERM 1828 1484691 - 1484707 + g 71 -5.1 -4.6008 | ATTTAAGTTTTCTTG GCAGTTT ACA ATACTGC TTTTAATTGTGTTTT TERM 1829 1484826 - 1484800 - R 82 -7.2 -4.80453 | overlap 1484801 CCATTATAAAAGAAA GCCGGAGACAAC GGG ATAGTCTCCGGA ACCATCTTTCATTCA TERM 1830 1484825 - 1484801 - R 87 -10.7 -3.47187 | overlap 1484800 CATTATAAAAGAAAG CCGGAGACAAC GGG ATAGTCTCCGG AACCATCTTTCATTC map 1485660 - 1484893 - | putative methionyl aminopeptidase Sca_1463 1485912 - 1486898 + | hypothetical protein TERM 1831 1486897 - 1486947 + T 79 -7.9 -4.28819 | gap 1, opp_overlap 1486899 1486906, overlap 1486899 1486904 1486906 ACAATCGTTATGCAT AATGAAAA-AGCGGATGACC AACTTCAAATCA GGTCATCCGCTATTTTCATA TTATTTATGTTGTTT TERM 1832 1486945 - 1486899 - T 100 -12.7 -3.36175 | gap 2, opp_overlap 1486897 1486899 1486904 1486906, overlap 1486906 AATCGTTATGCATAA TGAAAA-AGCGGATGACC-AACT TCA AATCAGGTCATCCGCTATTTTCA TATTATTTATGTTGT TERM 1833 1486899 - 1486945 + T 89 -10.5 -3.70926 | gap 1, opp_overlap 1486899 1486906, overlap 1486897 1486904 1486906 AATCGTTATGCATAA TGAAAA-AGCGGATGACC AACTTCAAATCA GGTCATCCGCTATTTTCA TATTATTTATGTTGT TERM 1834 1486904 - 1486939 + T 76 -6.2 -4.52347 | opp_overlap 1486899 1486906, overlap 1486899 1486897 1486906 TTATGCATAATGAAA AAGCGGATGACC AACTTCAAATCA GGTCATCCGCTA TTTTCATATTATTTA TERM 1835 1486906 - 1486937 + T 80 -8.8 -3.84363 | opp_overlap 1486899 1486906, overlap 1486904 1486899 1486897 ATGCATAATGAAAAA GCGGATGACC AACTTCAAATCA GGTCATCCGC TATTTTCATATTATT TERM 1836 1486937 - 1486906 - T 100 -11 -4.93968 | gap 1, opp_overlap 1486906 1486904 1486899 1486897, overlap 1486899 ATGCATAATGAAAAA GCGGATGACC-AACT TCA AATCAGGTCATCCGC TATTTTCATATTATT Sca_1464 1487673 - 1486948 - | hypothetical protein Sca_1465 1488986 - 1487670 - | hypothetical protein TERM 1837 1488924 - 1488937 + g 72 -8.1 -3.51232 | overlap 1488920 ATCTGTACCGCGTTT GCCGA CAGC TCGGC TTGCTTTGCGCGCAA Sca_1466 1489155 - 1489712 + | hypothetical protein TERM 1838 1489713 - 1489743 + T 93 -8.5 -5.24531 | gap 1, overlap 1489741 ATAGATAAAGGTTAA TCGATTGTGACATT TTTA GATG-CACAATCGA TTTTTTATAGAAAGT dinP 1490818 - 1489748 - | similar to DNA polymerase IV TERM 1839 1490944 - 1490956 + H 70 -3.5 -5.04265 | TACATTATTCGGAAT TAAAT AAA ATTTA TTTTTGATATTTTTT Sca_1468 1491094 - 1491414 + | putative general stress protein TERM 1840 1491427 - 1491453 + T 100 -10.3 -4.54727 | gap 1 TAAATAAAATATTTT GAGGGCTAAACT TAAA AGTTT-GCCCTC TTTTAATTTGAAAAG TERM 1841 1491463 - 1491494 + T 100 -11.6 -4.21773 | opp_overlap 1491468, overlap 1491468 GCCCTCTTTTAATTT GAAAAGCTGACAGG CTTC CCTGTCAGCTCATC TTATTTATGTTCAAA TERM 1842 1491468 - 1491489 + T 100 -14.5 -2.93099 | opp_overlap 1491468, overlap 1491463 CTTTTAATTTGAAAA GCTGACAGG CTTC CCTGTCAGC TCATCTTATTTATGT TERM 1843 1491489 - 1491468 - T 100 -14.5 -4.19238 | opp_overlap 1491468 1491463 CTTTTAATTTGAAAA GCTGACAGG CTTC CCTGTCAGC TCATCTTATTTATGT Sca_1469 1492856 - 1491495 - | putative RNA methyltransferase TERM 1844 1492907 - 1492879 - R 89 -6.8 -5.36441 | opp_overlap 1492879 CCTCCATAGAAAAAA GGTCAGGATTAA AATGA TTATTCCTAACC TTTCGATTATCAATC Sca_1470 1493837 - 1492917 - | hypothetical protein TERM 1845 1493149 - 1493159 + g 73 -5.4 -4.58663 | ATATGTCCTAATTCT GCAA GGT TTGC TTTTTGAACAATAAT TERM 1846 1494063 - 1494025 - R 100 -10.5 -5.35459 | ATATACTATAAAAAA TCCTACCATTAAGCACT TTGAT AGCACTCAATAGTAGGA TAATTTCAACAGTTA gatB 1495515 - 1494088 - | glutamyl-tRNAGln amidotransferase subunit B TERM 1847 1495495 - 1495481 - G 71 -8.6 -3.14878 | GTTTTCAACTCAACA TGGACT TCA AGTCCA ATCACTGTTTCAAAA gatA 1496989 - 1495532 - | glutamyl-tRNAGln amidotransferase subunit A gatC 1497291 - 1496989 - | glutamyl-tRNAGln amidotransferase subunit C putP 1497680 - 1499221 + | high affinity proline permease TERM 1848 1499267 - 1499229 - T 100 -27.8 -5.5454 | opp_overlap 1499229 CTAAATAAACAAAAA CAAAGCATCATCGCCACA CTT TGTGGCGATGATGCTTTG TTTTTGTTTTCAATA TERM 1849 1499229 - 1499267 + T 100 -27.8 -5.48213 | opp_overlap 1499229 CTAAATAAACAAAAA CAAAGCATCATCGCCACA CTT TGTGGCGATGATGCTTTG TTTTTGTTTTCAATA Sca_1475 1500321 - 1499284 - | putative D-isomer specific 2-hydroxyacid dehydrogenase TERM 1850 1500453 - 1500470 + r 81 -8.5 -4.27316 | opp_overlap 1500453 1500458 ATAAGAATTAAAAAA GATACCT GAAA AGGTATC TTTTAAGTTACAACC TERM 1851 1500470 - 1500453 - R 95 -8.5 -5.39221 | opp_overlap 1500453, overlap 1500458 ATAAGAATTAAAAAA GATACCT GAAA AGGTATC TTTTAAGTTACAACC Sca_1476 1501695 - 1500493 - | hypothetical protein TERM 1852 1500723 - 1500745 + g 71 -7.1 -3.89346 | TATTAACAAATTTTG CTTTACCTA CTGCT TGGGTAAAG TTTGTGAAATAAGAC lig 1503722 - 1501716 - | DNA ligase TERM 1853 1502258 - 1502270 + g 84 -7.7 -4.65263 | opp_overlap 1502242 1502258 CTTCAATTGCATTAA GCAGA TTA TCTGC TTTCTTTTCACCCAT pcrA 1505921 - 1503726 - | ATP-dependent DNA helicase TERM 1854 1505767 - 1505777 + g 80 -6.8 -4.8048 | opp_overlap 1505767 GCCAATACATTATAA GGAG AAA CTCC TTTTTCATCTAACAA pcrB 1506611 - 1505922 - | putative PcrB family protein Sca_1480 1506844 - 1506734 - | hypothetical protein TERM 1855 1506811 - 1506783 - G 84 -7.6 -4.63586 | gap 1, opp_overlap 1506783 AGAGTACATATAAAA CCCATTCGCACTA AAAA TAATG-GAATGGG TTTCGGTATATCAAA Sca_1481 1507130 - 1506828 - | hypothetical protein purB 1508549 - 1507251 - | adenylosuccinate lyase TERM 1856 1508715 - 1508753 + r 73 -6 -4.61824 | opp_overlap 1508715 1508716, overlap 1508716 ACTTTTTCAACAAAA CGCCCAATCAGCTATG TTATTTC CATCTCTGATTGGGCA TTTTAATTATTCTTC TERM 1857 1508753 - 1508715 - R 85 -8.2 -4.63486 | opp_overlap 1508715 1508716, overlap 1508716 ACTTTTTCAACAAAA CGCCCAATCAGCTATG TTATTTC CATCTCTGATTGGGCA TTTTAATTATTCTTC TERM 1858 1508752 - 1508716 - R 78 -9.5 -3.3761 | opp_overlap 1508715 1508716, overlap 1508715 CTTTTTCAACAAAAC GCCCAATCAGCTATG TTATTTC CATCTCTGATTGGGC ATTTTAATTATTCTT TERM 1859 1508716 - 1508752 + r 78 -9.5 -3.35467 | opp_overlap 1508716 1508715, overlap 1508715 CTTTTTCAACAAAAC GCCCAATCAGCTATG TTATTTC CATCTCTGATTGGGC ATTTTAATTATTCTT Sca_1483 1508936 - 1508760 - | hypothetical protein Sca_1484 1509495 - 1508926 - | hypothetical protein nadE 1510389 - 1509556 - | NAD synthetase Sca_1486 1511860 - 1510391 - | hypothetical protein TERM 1860 1511194 - 1511206 + g 73 -3.3 -5.09225 | AGACGCAATCTTTAT GACGC TCT GCGTA TTTTTTAAATGCAAT nos 1512109 - 1513182 + | nitric oxide synthase oxygenase Sca_1488 1513216 - 1514025 + | hypothetical protein TERM 1861 1514035 - 1514067 + F 79 -5 -5.22312 | opp_overlap 1514035 GCATAAATCATCTAA CTTCCTTCCAAA TCGAACATT TTTGAAAGGAAG TTTTTTCATATACAT drrC 1514129 - 1516402 + | putative daunorubicin resistance protein TERM 1862 1516407 - 1516454 + T 100 -15 -2.87334 | opp_overlap 1516408 1516412, overlap 1516412 TCGCTGATTAAACAA AGAAAGTCCCTGTGCTGCAC TATTTTGC GTGCTGCATAGGGACTTTCA ATTATATTCATTTAA TERM 1863 1516453 - 1516408 - T 100 -16.3 -4.49556 | opp_overlap 1516407 1516412, overlap 1516412 CGCTGATTAAACAAA GAAAGTCCCTGTGCTGCAC TATTTTGC GTGCTGCATAGGGACTTTC AATTATATTCATTTA TERM 1864 1516412 - 1516449 + T 100 -13.5 -3.85509 | opp_overlap 1516408 1516412, overlap 1516407 GATTAAACAAAGAAA GTCCCTGTGCTGCAC TATTTTGC GTGCTGCATAGGGAC TTTCAATTATATTCA TERM 1865 1516449 - 1516412 - T 100 -11.3 -4.80736 | opp_overlap 1516412 1516407, overlap 1516408 GATTAAACAAAGAAA GTCCCTGTGCTGCAC TATTTTGC GTGCTGCATAGGGAC TTTCAATTATATTCA aldH 1517838 - 1516462 - | putative aldehyde dehydrogenase TERM 1866 1517763 - 1517775 + g 71 -4.9 -4.62168 | TTAATTGTTTTCTGC GATAT TTA ATATC TTTTGTAATTTGGGT ppaC 1519007 - 1518081 - | putative manganese-dependent inorganic pyrophosphatase Sca_1492 1519634 - 1519083 - | hypothetical protein Sca_1493 1519770 - 1520882 + | hypothetical protein TERM 1867 1520889 - 1520926 + T 100 -12.1 -4.71584 | opp_overlap 1520889 TTGAAATAGAAAAAA CATGCGCTTGTGACG CTTTAATA TGTCGCAGGCGCATG TTTCTTATTTATTTC TERM 1868 1520926 - 1520889 - T 90 -7 -5.56264 | opp_overlap 1520889 TTGAAATAGAAAAAA CATGCGCTTGTGAC GCTTTAATAT GTCGCAGGCGCATG TTTCTTATTTATTTC Sca_1494 1521030 - 1520935 - | truncated putative ArsB/NhaD permease (fragment 2) Sca_1495 1522497 - 1521037 - | truncated putative ArsB/NhaD permease (fragment 1) TERM 1869 1521289 - 1521268 - G 80 -5.9 -4.96427 | TAAGAATAAAACAAA CATCGTGAT GACA ATAACGATG AGAAGCGGACTCACA TERM 1870 1522688 - 1522712 + r 73 -5.7 -4.55689 | opp_overlap 1522660 1522688 1522690, overlap 1522690 CAGAGCATAAAAAAA CACCGATGC AATTTAA GCATCGGTA TTTTATCTAAGTCAT TERM 1871 1522712 - 1522688 - R 100 -7.9 -5.69473 | opp_overlap 1522688 1522690, overlap 1522660 1522690 CAGAGCATAAAAAAA CACCGATGC AATTTAA GCATCGGTA TTTTATCTAAGTCAT TERM 1872 1522690 - 1522710 + r 79 -8.3 -3.88698 | opp_overlap 1522690 1522688, overlap 1522688 GAGCATAAAAAAACA CCGATGC AATTTAA GCATCGG TATTTTATCTAAGTC TERM 1873 1522710 - 1522690 - R 85 -8.3 -4.47611 | opp_overlap 1522688 1522690, overlap 1522688 GAGCATAAAAAAACA CCGATGC AATTTAA GCATCGG TATTTTATCTAAGTC Sca_1496 1523764 - 1522730 - | hypothetical protein Sca_1497 1523936 - 1524340 + | hypothetical protein TERM 1874 1524378 - 1524350 - T 100 -9.6 -4.89567 | opp_overlap 1524350 1524345 1524351, overlap 1524351 CTCTAAAACAGAAAA TGCACTTGCTGA ATCAA CCAGCAAGTGCT ATCTCTTAATTATTC TERM 1875 1524377 - 1524351 - T 100 -13.1 -3.52656 | opp_overlap 1524351 1524350 1524345, overlap 1524350 TCTAAAACAGAAAAT GCACTTGCTGA ATCAA CCAGCAAGTGC TATCTCTTAATTATT TERM 1876 1524351 - 1524377 + T 100 -12.4 -3.1682 | opp_overlap 1524350 1524351, overlap 1524350 1524345 TCTAAAACAGAAAAT GCACTTGCTG AATCAAC CAGCAAGTGC TATCTCTTAATTATT TERM 1877 1524413 - 1524423 + T 72 -4 -5.04082 | CCAGATTCGATATCT GAAA CGA TTTC TTTTGTTCTTCTTTC Sca_1498 1524627 - 1524388 - | hypothetical protein TERM 1878 1524753 - 1524714 - H 100 -10.2 -5.18561 | opp_overlap 1524714 1524726 TAAATATGTAAAAAA CGAAATAACTTACTTACC TAAC GGAAAGTTAATTATTTCG TTGATTGTAAGATTA TERM 1879 1524714 - 1524753 + H 71 -8 -3.45832 | opp_overlap 1524714, overlap 1524726 TAAATATGTAAAAAA CGAAATAACTTACTTACC TAAC GGAAAGTTAATTATTTCG TTGATTGTAAGATTA Sca_1499 1525001 - 1526044 + | hypothetical protein TERM 1880 1526083 - 1526047 - T 81 -9.5 -3.54488 | opp_overlap 1526052, overlap 1526045 1526052 TGCCTCTAAATAATA TTTAAGCACGTACGAAA AAA TTTCGTACGTGCTTCTT CTTTGCTAATTTATT TERM 1881 1526078 - 1526052 - T 100 -18.2 -3.2661 | opp_overlap 1526052, overlap 1526047 1526045 CTAAATAATATTTAA GCACGTACGAAA AAA TTTCGTACGTGC TTCTTCTTTGCTAAT TERM 1882 1526052 - 1526078 + T 100 -18.2 -4.13206 | opp_overlap 1526052 1526047 1526045 CTAAATAATATTTAA GCACGTACGAAA AAA TTTCGTACGTGC TTCTTCTTTGCTAAT Sca_1500 1526604 - 1526089 - | hypothetical protein TERM 1883 1526792 - 1526809 + r 81 -7.1 -4.6391 | opp_overlap 1526794 CTGTGATATCTTGAA CATTTTC GTCT GAAAATG TTTTATGTACTTCTT Sca_1501 1527481 - 1526921 - | hypothetical protein TERM 1884 1527640 - 1527609 - R 70 -3.8 -5.14563 | gap 1 TTCTCCACTAAAAAA GATGGCGC-TTTAAA ATA TTGAAATGCACCACC TTTAATAGCATGTTT Sca_1502 1528133 - 1527654 - | hypothetical protein Sca_1503 1528363 - 1528926 + | hypothetical protein TERM 1885 1528982 - 1528938 - T 76 -10.1 -2.71736 | opp_overlap 1528938 1528943 1528979, overlap 1528935 1528943 ATAAACCAACAATAT TTAAAGCCGGAATTTTGGTTA TAT TGACCATCATTCCGGCTTTTA TATTAAATATCTTTA TERM 1886 1528938 - 1528982 + T 100 -12.3 -3.16654 | opp_overlap 1528938 1528935 1528943, overlap 1528943 1528979 ATAAACCAACAATAT TTAAAGCCGGAATTTTGGTTA TAT TGACCATCATTCCGGCTTTTA TATTAAATATCTTTA TERM 1887 1528977 - 1528943 - T 86 -10 -3.81258 | opp_overlap 1528938 1528943, overlap 1528938 1528935 CCAACAATATTTAAA GCCGGAATTTTGGTTA TAT TGACCATCATTCCGGC TTTTATATTAAATAT TERM 1888 1528943 - 1528977 + T 100 -12.2 -4.69326 | opp_overlap 1528943 1528938 1528935, overlap 1528938 CCAACAATATTTAAA GCCGGAATTTTGGTTA TAT TGACCATCATTCCGGC TTTTATATTAAATAT Sca_1504 1529713 - 1528985 - | hypothetical protein Sca_1505 1530597 - 1529710 - | hypothetical protein Sca_1506 1531298 - 1530612 - | hypothetical protein TERM 1889 1530850 - 1530838 - G 72 -7.7 -3.67173 | opp_overlap 1530838, overlap 1530828 ACAAATCCCCAATAA GGGAT AAA ATCCC TTCTGACTTCAGAAT Sca_1507 1532185 - 1531295 - | hypothetical protein Sca_1508 1532562 - 1532182 - | hypothetical protein TERM 1890 1532701 - 1532737 + H 74 -3.2 -5.48213 | gap 1, opp_overlap 1532704 1532707, overlap 1532704 1532707 ATACATAGCTAAAAA AAAGT-ACTGCACTTAT TATC ATAAATGCAGTTACTTC TTTTTATTTTGCATA TERM 1891 1532704 - 1532734 + H 71 -4.9 -4.80077 | gap 1, opp_overlap 1532704 1532707, overlap 1532701 1532707 CATAGCTAAAAAAAA GT-ACTGCACTTAT TATC ATAAATGCAGTTAC TTCTTTTTATTTTGC TERM 1892 1532734 - 1532704 - H 95 -7.1 -5.83822 | gap 1, opp_overlap 1532701 1532704 1532707, overlap 1532707 CATAGCTAAAAAAAA GTA-CTGCACTTAT TATC ATAAATGCAGTTAC TTCTTTTTATTTTGC TERM 1893 1532730 - 1532707 - H 77 -9 -3.61589 | opp_overlap 1532704 1532701 1532707, overlap 1532704 AGCTAAAAAAAAGTA CTGCACTTAT TATC ATAAATGCAG TTACTTCTTTTTATT TERM 1894 1533438 - 1533428 - g 81 -4 -5.4505 | TTTGGGAAGAAAAAA TTCT TCA AGAA AATACAGACTTAACT Sca_1509 1533133 - 1534428 + | hypothetical protein TERM 1895 1534470 - 1534439 - f 100 -12.4 -4.63542 | opp_overlap 1534439 CATAATTCCCAAAAA GGTACTGAACTACA ATAA TGTAGACCAGTACC TTTTTTATTAATAAT TERM 1896 1534439 - 1534470 + F 100 -10.2 -5.52023 | opp_overlap 1534439 CATAATTCCCAAAAA GGTACTGAACTACA ATAA TGTAGACCAGTACC TTTTTTATTAATAAT Sca_1510 1534537 - 1534686 + | hypothetical protein TERM 1897 1534908 - 1534882 - g 80 -5.9 -5.00851 | gap 1 AGCAATTAAAGAAAA CCGTAACAGTAC TGAA GTAC-GTGACGG TCAACAAAATGCATT Sca_1511 1534670 - 1535968 + | putative IgG-binding protein TERM 1898 1536019 - 1535979 - T 80 -6.4 -4.92314 | gap 1, opp_overlap 1535979 AGTAACCTATAAAAA CAACTCGATTTTCATGA AAATTAAA CCATG-AAACCGAGTTG TTTTTTTTGATTATT TERM 1899 1535979 - 1536019 + T 89 -3.5 -6.00814 | gap 1, opp_overlap 1535979 AGTAACCTATAAAAA CAACTCGATTTTCATG AAAATTAAAC CATGAAAC-CGAGTTG TTTTTTTTGATTATT Sca_1512 1536323 - 1536030 - | hypothetical protein TERM 1900 1536165 - 1536193 + g 74 -4.6 -5.0133 | opp_overlap 1536173 ATTACTTTCATTAAT CGTTAAAACAAC CTTGT GTTGTTGTGGCG TTTTTTCAACGAGTA Sca_1513 1536851 - 1536393 - | hypothetical protein TERM 1901 1536700 - 1536710 + g 70 -5.4 -4.50943 | TCTTTTTTCAATATT GGTA AAA TACC TTTTCTGAATTGTTC TERM 1902 1538035 - 1538020 - g 71 -4.8 -4.57837 | ACATGTTGGGAAAAA TATGAT GACA ATCATA AAATTGTTCGGTTCG ltaE 1537081 - 1538106 + | putative L-threonine aldolase TERM 1903 1538113 - 1538142 + T 100 -10.9 -5.04175 | opp_overlap 1538118, overlap 1538118 CAAATTTGAATCATT TAAAACCACTTGT AAGA ACAGGTGGTTTTG TTTTTATCTGATTCC TERM 1904 1538118 - 1538137 + T 100 -8.6 -5.38839 | opp_overlap 1538118, overlap 1538113 TTGAATCATTTAAAA CCACTTGT AAGA ACAGGTGG TTTTGTTTTTATCTG TERM 1905 1538137 - 1538118 - T 72 -6.4 -4.23892 | opp_overlap 1538113 1538118 TTGAATCATTTAAAA CCACTTGT AAGA ACAGGTGG TTTTGTTTTTATCTG TERM 1906 1538270 - 1538233 - T 100 -15.1 -5.43487 | opp_overlap 1538241 AAACTAGACAAAAAA GACGTTTCCTAAAGATT TAGT AATCTCAAGGAAACGTC TCAAAAGGTTGCTTT TERM 1907 1538821 - 1538831 + T 70 -4 -4.86902 | opp_overlap 1538821, overlap 1538816 TTATCCCTTTTAAAA TACA AAT TGTA TTTTCTTATAATTTC Sca_1515 1539701 - 1538982 - | hypothetical protein TERM 1908 1539074 - 1539100 + g 100 -8.9 -5.16472 | TATTCATTCTACCTA GTGTATATCGA GTAGG TTGATATACAC TTTTTTCAAGTTTTT Sca_1516 1540295 - 1540873 + | hypothetical protein TERM 1909 1540915 - 1540945 + T 76 -7.8 -3.99592 | gap 1, opp_overlap 1540919, overlap 1540918 1540919 TATATTTTTATTAAA TAAA-CCCACCTA TTCATT TAGGTGGGCTTTA TTTATAATAGTAGAT TERM 1910 1540918 - 1540941 + T 78 -6.7 -4.59944 | opp_overlap 1540919, overlap 1540915 1540919 ATTTTTATTAAATAA ACCCACCTA TTCATT TAGGTGGGC TTTATTTATAATAGT TERM 1911 1540940 - 1540919 - T 100 -10.2 -4.49556 | opp_overlap 1540918 1540915 1540919 TTTTTATTAAATAAA CCCACCTA TTCATT TAGGTGGG CTTTATTTATAATAG TERM 1912 1540919 - 1540940 + T 83 -10.2 -3.34882 | opp_overlap 1540919, overlap 1540918 1540915 TTTTTATTAAATAAA CCCACCTA TTCATT TAGGTGGG CTTTATTTATAATAG Sca_1517 1541217 - 1540924 - | hypothetical protein Sca_1518 1541529 - 1541338 - | hypothetical protein Sca_1519 1542306 - 1541578 - | hypothetical protein TERM 1913 1541652 - 1541662 + g 77 -2.6 -5.51046 | CTTCTAAATAACATT TAAT ACC ATTA TTTTTTATATATTTA TERM 1914 1542366 - 1542339 - R 100 -11.4 -5.81622 | opp_overlap 1542339 ATAAAATTAAAAAAA TAGGGCAAACAC ATAA GTGTTCACCCTA TTAATTGTGACTAAT Sca_1520 1542935 - 1542387 - | hypothetical protein Sca_1521 1543390 - 1542935 - | putative phage-associated protein Sca_1522 1543850 - 1543512 - | hypothetical protein Sca_1523 1544161 - 1543847 - | hypothetical protein Sca_1524 1544990 - 1544454 - | hypothetical protein Sca_1525 1545494 - 1545018 - | hypothetical protein Sca_1526 1546086 - 1546178 + | hypothetical protein TERM 1915 1546957 - 1546987 + T 70 -5.6 -4.32177 | opp_overlap 1546966, overlap 1546959 TAATAAAGAGCGCTT GTTATTAAAGATAA TTA TCATCTTTAATACC TTTATTATAACATAG Sca_1527 1547480 - 1547022 - | hypothetical protein Sca_1528 1548128 - 1547493 - | hypothetical protein Sca_1529 1548786 - 1548322 - | hypothetical protein Sca_1530 1550818 - 1549298 - | hypothetical protein TERM 1916 1549359 - 1549378 + g 83 -2.1 -5.83822 | CCATTAGGTACAAGT GTTGGCT CAAAAT AACCAAC TTTTTTTTGCATGTC TERM 1917 1549591 - 1549606 + g 70 -5.4 -4.37544 | opp_overlap 1549587 1549591 CTTTAAAATCATATA CAGGGT CGTT ATCCTG TTTATATTCTTCTAA Sca_1531 1551718 - 1550831 - | hypothetical protein TERM 1918 1551104 - 1551125 + g 70 -8.8 -2.95116 | TTTATCTGCTTGAAC GTTGTCCA GATTTG TGGACAAC TGATTTAAATCATCA TERM 1919 1551825 - 1551861 + r 78 -3 -5.52023 | gap 1 TCAAATTGCGTTTAG GCGTTATCTGTTCCGTT TGCC GACTGTACAGATG-CGC TTTTTTCTTGCTCAT Sca_1532 1552135 - 1551821 - | hypothetical protein Sca_1533 1552232 - 1552137 - | hypothetical protein Sca_1534 1552613 - 1552311 - | hypothetical protein Sca_1535 1553243 - 1552614 - | hypothetical protein Sca_1536 1553459 - 1553247 - | hypothetical protein TERM 1920 1553484 - 1553494 + H 81 -2.6 -5.69473 | opp_overlap 1553484 CTCCTTTATAACAGA TATT TGT AATA TTTTTTTGTAGTCTG Sca_1537 1553632 - 1553751 + | hypothetical protein Sca_1538 1553780 - 1554265 + | hypothetical protein TERM 1921 1555428 - 1555390 - g 100 -9.7 -5.38047 | GATTCATACAAAAAA GACGCTTCCCAAAAGTT TAGTC AACTCATGGAAAACGTC AGTAAAGAATTATTT Sca_1539 1554274 - 1555446 + | putative integrase groEL 1557137 - 1555515 - | GroEL protein TERM 1922 1556095 - 1556124 + g 72 -3.8 -4.99035 | gap 1 TCTTCAATTTGTGAT TTCAATTG-TGTA ACACG TGCATCAATTGAA TTTTTATCTCCATCA TERM 1923 1556688 - 1556715 + g 93 -6.4 -5.56263 | gap 1 TTCTTCATCAGCTGC TGAAATGGCACCA ACT TGG-GCAATTTCA TTTTTATTTTCTACT groES 1557463 - 1557179 - | GroES protein TERM 1924 1557827 - 1557850 + G 71 -9 -3.254 | opp_overlap 1557830, overlap 1557830 ATACACAAGTCGGAT TAATGATTGC AGCT GCAATCATTG TGTTATGGATGAATG TERM 1925 1557830 - 1557847 + G 74 -8.5 -3.76568 | opp_overlap 1557830, overlap 1557827 CACAAGTCGGATTAA TGATTGC AGCT GCAATCA TTGTGTTATGGATGA Sca_1542 1557682 - 1558428 + | hypothetical protein TERM 1926 1558466 - 1558438 - T 82 -11.1 -2.76242 | opp_overlap 1558438, overlap 1558435 1558431 ATCTAACACATATCA CCTGACATACAAT TCA AACGTATGTCAGG TTTTTTGTATGAAAA TERM 1927 1558438 - 1558466 + T 100 -9 -5.36441 | opp_overlap 1558435 1558431 1558438 ATCTAACACATATCA CCTGACATAC AATTCAAAC GTATGTCAGG TTTTTTGTATGAAAA TERM 1928 1558511 - 1558482 - T 84 -8.7 -4.25104 | opp_overlap 1558484 TTTTTTGTATGAAAA TACCGTCAAAG TTAAACTG CTCTGACGGTA TCTCGACTATTCCTC Sca_1543 1560371 - 1558518 - | serine-aspartate repeat family protein TERM 1929 1559574 - 1559586 + g 83 -6.3 -5.18726 | CGGTATAACATTTCC TGAAC CCT GTTCA TTTTTATTATCCGAA TERM 1930 1560468 - 1560484 + H 70 -5.3 -4.55023 | opp_overlap 1560468 1560470 TTGATTGAAATGAAC TATTAAT ATA ATTAATA TTTTGTAATATTGAA Sca_1544 1560595 - 1561395 + | hypothetical protein TERM 1931 1561444 - 1561405 - f 72 -6.6 -4.15143 | gap 1, opp_overlap 1561410, overlap 1561409 1561410 AATTAATTATACAAA GCAAT-GCCCGTGAGTT TGGGAGG AACTCACGGGCTATTAA ACTTATTATTAAGGG TERM 1932 1561439 - 1561409 - f 93 -11.2 -3.66968 | opp_overlap 1561410, overlap 1561405 1561410 AATTATACAAAGCAA TGCCCGTGAGTT TGGGAGG AACTCACGGGCT ATTAAACTTATTATT TERM 1933 1561410 - 1561438 + F 100 -15.4 -3.1315 | opp_overlap 1561410 1561409 1561405 ATTATACAAAGCAAT GCCCGTGAGTTT GGGAG GAACTCACGGGC TATTAAACTTATTAT TERM 1934 1561438 - 1561410 - f 100 -14.7 -2.79096 | opp_overlap 1561410, overlap 1561409 1561405 ATTATACAAAGCAAT GCCCGTGAGTT TGGGAGG AACTCACGGGC TATTAAACTTATTAT TERM 1935 1562399 - 1562424 + G 71 -7.1 -3.93236 | gap 1, opp_overlap 1562406, overlap 1562406 1562408 TTTAGAAGTTTTCTT CAACAATTTGTT CAA AACAA-TTGTTG TTTATGGACTTGCTC agrB 1562286 - 1562861 + | accessory gene regulator B agrD 1562870 - 1563007 + | AgrD protein TERM 1936 1563474 - 1563453 - g 78 -8.9 -3.70742 | opp_overlap 1563445 AAAATTTTAAGACAA TCTTATTTG TCGA CAAATAAGA TCTACATAACGATTG TERM 1937 1563481 - 1563497 + G 78 -3.7 -5.38549 | opp_overlap 1563476, overlap 1563476 CAAATAAGATCTACA TAACGAT TGT AGCGTTA TTTTTATTCTTTACA agrC 1563039 - 1563827 + | autoinducer sensor protein AgrC, probably truncated agrC'' 1563831 - 1564334 + | hypothetical protein, similar to C-terminus of AgrC agrA 1564339 - 1565055 + | Accessory gene regulator protein A TERM 1938 1565106 - 1565051 - T 82 -5.3 -5.47399 | gap 3, opp_overlap 1565058 1565063, overlap 1565057 1565058 1565063 GTAACCTTAAAAAAA TATAAATTAAAATGCCTACTAAGT-ACA AAT CGTCACTTAGTAGGCATTTTG-TT-ATA GCTCCAAATCAAAGA TERM 1939 1565102 - 1565057 - T 100 -9.3 -4.72373 | gap 1, opp_overlap 1565058 1565063, overlap 1565051 1565058 1565063 TTAAAAAAATATAAA TTAAAATGCCTACTAAGT-ACA AAT CGTCACTTAGTAGGCATTTTGT TATAGCTCCAAATCA TERM 1940 1565058 - 1565101 + T 100 -14.3 -3.35996 | gap 1, opp_overlap 1565057 1565051 1565058 1565063, overlap 1565063 TAAAAAAATATAAAT TAAAATGCCTACTAAGT-AC AAATC GTCACTTAGTAGGCATTTTG TTATAGCTCCAAATC TERM 1941 1565101 - 1565058 - T 100 -12.8 -3.40983 | gap 1, opp_overlap 1565058 1565063, overlap 1565057 1565051 1565063 TAAAAAAATATAAAT TAAAATGCCTACTAAGT-ACA AAT CGTCACTTAGTAGGCATTTTG TTATAGCTCCAAATC TERM 1942 1565096 - 1565063 - T 100 -12.7 -4.68919 | gap 1, opp_overlap 1565063 1565058, overlap 1565058 1565057 1565051 AAATATAAATTAAAA TGCCTACTAAGT-ACA AAT CGTCACTTAGTAGGCA TTTTGTTATAGCTCC TERM 1943 1565063 - 1565096 + T 100 -12 -4.79352 | gap 1, opp_overlap 1565058 1565057 1565051 1565063, overlap 1565058 AAATATAAATTAAAA TGCCTACTAAGT-AC AAATC GTCACTTAGTAGGCA TTTTGTTATAGCTCC scrB 1566574 - 1565102 - | sucrose-6-phosphate hydrolase TERM 1944 1567364 - 1567382 + G 71 -9 -3.20712 | TACAGGGATTCGTCA TTTCTTCT TCG AGAAGAAA TTCCATCCTTTTGTT TERM 1945 1567862 - 1567844 - g 72 -3.8 -4.9138 | overlap 1567845 ATCATCTAAACAAAA CGCAGC ACGTCCA GCTGCA CAATCATAATTTCAA Sca_1551 1566786 - 1567871 + | hypothetical protein Sca_1552 1567898 - 1568122 + | hypothetical protein TERM 1946 1568126 - 1568181 + T 100 -21.7 -3.59247 | opp_overlap 1568128 1568141, overlap 1568128 1568141 CAAAAAGCATAACTT AAGCAATTAGAAAAAGCGTTCCAAA CCTGAA TTTGGAACGCTTTTTTTAATTGCTG TTTCGAAGATTGTTC TERM 1947 1568179 - 1568128 - T 100 -22.8 -3.28204 | opp_overlap 1568128 1568126 1568141, overlap 1568141 AAAAGCATAACTTAA GCAATTAGAAAAAGCGTTCCAAAC CTGA ATTTGGAACGCTTTTTTTAATTGC TGTTTCGAAGATTGT TERM 1948 1568128 - 1568179 + T 100 -24.3 -3.36837 | opp_overlap 1568128 1568141, overlap 1568126 1568141 AAAAGCATAACTTAA GCAATTAGAAAAAGCGTTCCAAA CCTGAA TTTGGAACGCTTTTTTTAATTGC TGTTTCGAAGATTGT TERM 1949 1568166 - 1568141 - T 100 -12.7 -5.00765 | opp_overlap 1568141 1568128 1568126, overlap 1568128 AAGCAATTAGAAAAA GCGTTCCAAAC CTGA ATTTGGAACGC TTTTTTTAATTGCTG TERM 1950 1568141 - 1568166 + T 100 -12 -5.65513 | opp_overlap 1568128 1568141, overlap 1568128 1568126 AAGCAATTAGAAAAA GCGTTCCAAA CCTGAA TTTGGAACGC TTTTTTTAATTGCTG Sca_1553 1568816 - 1568172 - | hypothetical protein TERM 1951 1571043 - 1571030 - g 76 -3.1 -5.35365 | gap 1, overlap 1571031 AAAACAGAAGAAAAA GC-TGC ATT GCAAGC TAAAGCTGAAGCAGA Sca_1554 1569413 - 1571341 + | putative ABC transporter ATP-binding protein TERM 1952 1571357 - 1571390 + T 100 -9.1 -4.63486 | gap 1, opp_overlap 1571342 1571352 1571350 1571357 1571359 TCCATAAATATTACA GAGGTGCTGAAATG AGAATTA CATTTCA-CACCTC TTTTATTACAAAAAT TERM 1953 1571390 - 1571357 - T 75 -9.1 -2.99719 | gap 1, opp_overlap 1571357, overlap 1571342 1571352 1571350 1571359 TCCATAAATATTACA GAGGTGCTGAAATG AGAATTA CATTTCA-CACCTC TTTTATTACAAAAAT TERM 1954 1571679 - 1571638 - T 87 -11.1 -3.34803 | opp_overlap 1571644 1571646, overlap 1571628 1571646 AAAAATGTAAACATA CAAAAAAAGAGACGCTAAC TCTT GTTAACATCTCTCTTATTG ATATTCCATTTATTC TERM 1955 1571671 - 1571646 - T 100 -9.1 -5.82281 | opp_overlap 1571646 1571644, overlap 1571638 AAACATACAAAAAAA GAGACGCTAAC TCTT GTTAACATCTC TCTTATTGATATTCC gcp 1572720 - 1571689 - | putative O-sialoglycoprotein endopeptidase TERM 1956 1572407 - 1572426 + g 77 -10.8 -2.56715 | AGCGGTTTGTCATAT GCAAAAGC TAAT GCTTTTGC TGCATTAATACCGAT Sca_1556 1573184 - 1572717 - | hypothetical protein Sca_1557 1573816 - 1573160 - | hypothetical protein Sca_1558 1574267 - 1573794 - | hypothetical protein TERM 1957 1574678 - 1574699 + H 95 -7.3 -5.96894 | overlap 1574665 AATGGGACTTTTGAA CGTTCCAAT TCTT GTTGGGACG TTTTTTTATTTGAAT TERM 1958 1574772 - 1574756 - g 74 -2.9 -5.40004 | overlap 1574765 1574769 GATCAAATCAAAAAA GGAGATC AAC AAGCTCC GGCTAGAAGTTTACT TERM 1959 1574837 - 1574851 + G 73 -8.6 -3.34239 | ATGAATAAACCATTC GTTGCA ATT TGCAAC TCTTATATCGATATC TERM 1960 1574910 - 1574894 - g 72 -8.1 -3.50393 | GTTCATCTCAGAGAA TTAGCAA ATA TTGCTAA GGAAGCCATTAGAGA ilvD 1574732 - 1576426 + | dihydroxy-acid dehydratase TERM 1961 1576680 - 1576715 + G 72 -8.4 -3.56325 | gap 1, opp_overlap 1576685, overlap 1576685 GTGCCGTACATGCAG CAGAAGGTTATGCCAGA GTT TCTGGCA-AACCTGGTG TTGTAGTTGTAACAA TERM 1962 1576710 - 1576685 - g 82 -11.3 -3.43492 | gap 1, opp_overlap 1576685 1576680 GTACATGCAGCAGAA GGTTATGCCAGA GTT TCTGGCA-AACC TGGTGTTGTAGTTGT TERM 1963 1576685 - 1576710 + G 79 -11.3 -2.83732 | gap 1, opp_overlap 1576685, overlap 1576680 GTACATGCAGCAGAA GGTTATGCCAGA GTT TCTGGCA-AACC TGGTGTTGTAGTTGT TERM 1964 1576978 - 1576957 - g 75 -8.8 -3.63627 | opp_overlap 1576961 CTTTCACATTGCAAA TACAGGAC GTAAGG GTCCTGTA GTCATCGACTTCCCT ilvB 1576433 - 1578193 + | acetolactate synthase large subunit ilvH 1578190 - 1578663 + | putative acetolactate synthase small (regulatory) subunit ilvC 1578720 - 1579724 + | alpha-keto-beta-hydroxylacil reductoisomerase leuA 1579750 - 1581282 + | 2-isopropylmalate synthase leuB 1581279 - 1582319 + | 3-isopropylmalate dehydrogenase TERM 1965 1583213 - 1583200 - g 72 -8.1 -3.62522 | opp_overlap 1583199 TAACTTGGGGAACAA GCCCA GAAA TGGGC GTAAGTTTCAGCACC leuC 1582335 - 1583717 + | 3-isopropylmalate dehydratase large subunit leuD 1583710 - 1584285 + | 3-isopropylmalate dehydratase small subunit ilvA 1584304 - 1585572 + | thereonine dehydratase TERM 1966 1585591 - 1585648 + T 100 -13.1 -4.25283 | opp_overlap 1585598, overlap 1585598 AAAACACATATTAAA CAACAAAGCTGGATATCTTATACTATA TTTT TGTAGTGTAAGATATCCAGCTTTCTAA TTTTAGTGGAAAAAT TERM 1967 1585641 - 1585598 - T 100 -15.6 -4.61162 | opp_overlap 1585598 1585591 ATATTAAACAACAAA GCTGGATATCTTATACTATA TTTT TGTAGTGTAAGATATCCAGC TTTCTAATTTTAGTG TERM 1968 1585598 - 1585641 + T 100 -20 -4.22407 | opp_overlap 1585598, overlap 1585591 ATATTAAACAACAAA GCTGGATATCTTATACTATA TTTT TGTAGTGTAAGATATCCAGC TTTCTAATTTTAGTG TERM 1969 1585692 - 1585681 - T 100 -5.8 -6.59152 | GCAATAAAAAAAAAA CTCG AACT CGAG ATCTCAATGCGGCTC TERM 1970 1588426 - 1588445 + T 90 -10.8 -3.66803 | opp_overlap 1588425 1588424, overlap 1588437 GAGTGTCCTACAACC CCAATGAG CAAG CTCATTGG TTTGGGCTCTTCCCG TERM 1971 1588748 - 1588762 + T 70 -8.6 -2.56715 | overlap 1588755 ATGTGAGTAATCTTC TTTGCC ATC GGCAAA TCGATTACTAGCGAT TERM 1972 1588929 - 1588946 + T 70 -8.5 -3.18065 | GTCACGTTAATCCGT CAGTTTC TGTT GAAACTG TTCCGTATATATCCT TERM 1973 1589881 - 1589899 + T 71 -8.8 -2.75963 | overlap 1589880 AGTTTCCAATGACCC TCCACGGT TGA GCCGTGGG CTTTCACATCAGACT TERM 1974 1590312 - 1590333 + T 100 -13.1 -3.224 | overlap 1590311 AAAACCGTCTTTCAT TGCAGAACC ATGC GGTTCTGCA TATTATCCGGCATTA TERM 1975 1590564 - 1590575 + T 71 -5.8 -4.39696 | opp_overlap 1590564 TAATTTGTTTTAAAA CGTC CTAA GACG TTTGTTAATTTGGAA TERM 1976 1590673 - 1590693 + T 70 -6.1 -4.19506 | opp_overlap 1590673 1590675 GAATCGAACCCACAA CATCAGCTT GGA AGGCTGAGG TTTTGCCATTAAACT Sca_1568 1591584 - 1591129 - | hypothetical protein Sca_1569 1593742 - 1591592 - | hypothetical protein TERM 1977 1592694 - 1592716 + g 73 -7.1 -4.07568 | gap 1, opp_overlap 1592715 TTTGTTTTCGATACT GGTG-GATGT GGAT ACATCACACC TTTTGCCACAAAAGA TERM 1978 1593190 - 1593210 + g 72 -4.1 -4.93288 | TTGTAATAAGCCCTC TTTTTAATG TAT CATTTAAAA TTTTATTTCGATATT TERM 1979 1593831 - 1593788 - R 100 -22.2 -3.04122 | opp_overlap 1593783 1593792, overlap 1593792 TTTTATCACAAATCA CAAATTAGGACTGAAACACT ATAT AGTGTTTCAGTCCTAATTTA ACTTGATATTTAATT TERM 1980 1593792 - 1593827 + r 100 -20.8 -3.81461 | opp_overlap 1593792 1593788, overlap 1593783 ATCACAAATCACAAA TTAGGACTGAAACACT ATAT AGTGTTTCAGTCCTAA TTTAACTTGATATTT TERM 1981 1593827 - 1593792 - R 100 -20.8 -4.18303 | opp_overlap 1593783 1593792, overlap 1593788 ATCACAAATCACAAA TTAGGACTGAAACACT ATAT AGTGTTTCAGTCCTAA TTTAACTTGATATTT sigB 1594621 - 1593851 - | sigma factor B rsbW 1595075 - 1594596 - | anti-sigmaB factor TERM 1982 1594930 - 1594942 + gr 74 -4.8 -4.74706 | overlap 1594938 GCATTAGTAACTGCT TCGC TAACT GCGA TTTTTGCATCTTCAA rsbV 1595403 - 1595077 - | putative anti-sigmaB factor antagonist rsbU 1596480 - 1595479 - | putative sigmaB regulation protein RsbU Sca_1574 1597171 - 1596824 - | hypothetical protein TERM 1983 1596889 - 1596904 + g 78 -4 -5.30616 | CTTTCATCTTTTCGT CTGATA AATA TGTCAG TTTTTCTTTAAGTCG Sca_1575 1597338 - 1597171 - | hypothetical protein alr 1598573 - 1597419 - | alanine racemase acpS 1598990 - 1598637 - | holo-[acyl-carrier protein] synthase Sca_1578 1599477 - 1598992 - | hypothetical protein Sca_1579 1600969 - 1599482 - | hypothetical protein Sca_1580 1601432 - 1600962 - | hypothetical protein TERM 1984 1601534 - 1601516 - R 71 -7.6 -3.38291 | TGGAGAATTTTATAA TTTTGTTT TTA AAACAAAA AAGCACTGATTCGAT TERM 1985 1601565 - 1601537 - R 100 -12.6 -5.79595 | opp_overlap 1601537 TTTTAAAACAAAAAA GCACTGATTCGA TAGTT TCGAATCAATGC TTTTCATCATTTATA TERM 1986 1601537 - 1601565 + r 100 -10.4 -4.40993 | opp_overlap 1601537 TTTTAAAACAAAAAA GCACTGATTCGA TAGTT TCGAATCAATGC TTTTCATCATTTATA Sca_1581 1603115 - 1601592 - | putative helicase murF 1604819 - 1603455 - | putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 1987 1603553 - 1603569 + g 72 -3.8 -4.98255 | opp_overlap 1603567 GTGCATGTTGTGTAA TGAATT CAATC AATTCA TTTTTATGATTGAAG TERM 1988 1604327 - 1604341 + g 75 -7.2 -4.21945 | AACCAGACATTCCCA TCTCTA AAA TAGAGA TTTCTGTATCTTCAT ddlA 1605902 - 1604832 - | putative D-alanine-D-alanine ligase A Sca_1584 1606160 - 1607377 + | hypothetical protein TERM 1989 1607429 - 1607383 - T 100 -7.8 -5.85011 | gap 3, opp_overlap 1607383 1607401 TAAAAATTAAAAAAA CAGGTTATCAGAGCGAAACATTC TTTA GAATGTTT---TCTGATAACCTG TTTTCAATTTAAAAT TERM 1990 1607383 - 1607429 + T 79 -7.8 -4.35926 | gap 3, opp_overlap 1607383, overlap 1607401 TAAAAATTAAAAAAA CAGGTTATCAGAGCGAAACATTC TTTA GAATGTTT---TCTGATAACCTG TTTTCAATTTAAAAT copA 1609866 - 1607665 - | putative copper-transporting P-type ATPase TERM 1991 1608352 - 1608362 + g 86 -5.4 -5.31456 | opp_overlap 1608350 1608352 AATAAAACTAATAGA TCCA ATT TGGA TTTTTTGTCCGTTAA copZ 1610172 - 1609963 - | putative copper-ion-binding protein Sca_1587 1610393 - 1610187 - | hypothetical protein Sca_1588 1610698 - 1610405 - | hypothetical protein Sca_1589 1610863 - 1612344 + | putative cardiolipin synthetase TERM 1992 1612444 - 1612405 - g 80 -5.8 -5.05301 | overlap 1612407 1612409 1612413 AAAGAAGCAGAAAAA TATATGAAGTCGCATCAT AGTG ATGATGCGACTGGACATG ACATAGAACATGTGA TERM 1993 1612442 - 1612407 - g 79 -8.4 -4.12226 | overlap 1612405 1612409 1612413 AGAAGCAGAAAAATA TATGAAGTCGCATCAT AGTG ATGATGCGACTGGACA TGACATAGAACATGT TERM 1994 1612440 - 1612409 - g 75 -8.8 -3.63511 | overlap 1612407 1612405 1612413 AAGCAGAAAAATATA TGAAGTCGCATCAT AGTG ATGATGCGACTGGA CATGACATAGAACAT TERM 1995 1612436 - 1612413 - g 100 -14 -3.50488 | overlap 1612409 1612407 1612405 AGAAAAATATATGAA GTCGCATCAT AGTG ATGATGCGAC TGGACATGACATAGA Sca_1590 1612369 - 1613016 + | hypothetical protein TERM 1996 1613039 - 1613089 + T 82 -7.9 -4.45517 | opp_overlap 1613038, overlap 1613043 GTTTTTTTGAATTAG TATTGCCCCTATAAAGTT-TCACTT TTT AAGTGCCAGCTTTATAGGGGCT-TA TTTTATCAATCATTT TERM 1997 1613043 - 1613086 + T 100 -15.6 -4.33182 | gap 1, opp_overlap 1613038, overlap 1613039 TTTTGAATTAGTATT GCCCCTATAAAGTT-TCACTT TTT AAGTGCCAGCTTTATAGGGGC TTATTTTATCAATCA paiA 1613619 - 1613107 - | putative regulatory protein PaiA TERM 1998 1613598 - 1613612 + g 78 -5.8 -4.86862 | CTTTAATATCGTCAG TTGTTA CTT TAACAA TTTTCATTTTTTGCC TERM 1999 1613722 - 1613677 - R 83 -8.6 -4.1899 | overlap 1613654 1613658 1613681 1613686 CTATTTCATCGAAAA TAAAGAAAATCAGCTGCAAC TTTTAT ATTACAACTGATCCTCTTTA CGATCGATTATTTTT TERM 2000 1613718 - 1613681 - R 72 -5 -4.68908 | overlap 1613658 1613677 1613686 TTCATCGAAAATAAA GAAAATCAGCTGCAAC TTTTAT ATTACAACTGATCCTC TTTACGATCGATTAT TERM 2001 1613713 - 1613686 - R 73 -3.5 -5.26247 | overlap 1613681 1613677 CGAAAATAAAGAAAA TCAGCTGCAAC TTTTAT ATTACAACTGA TCCTCTTTACGATCG Sca_1592 1614599 - 1613730 - | hypothetical protein TERM 2002 1614284 - 1614296 + g 78 -4.1 -5.30616 | overlap 1614278 TATCTTCTTGTGTAC GTGCA CGT TGTAC TTTTTCTTTAACTGC thiE 1615326 - 1614688 - | thiamin phosphate synthase thiM 1616121 - 1615327 - | hydroxyethylthiazole kinase thiD 1616935 - 1616114 - | phosphomethylpyrimidine kinase tenA 1617618 - 1616932 - | putative transcriptional activator tenA TERM 2003 1617665 - 1617642 - R 100 -9.6 -5.7946 | opp_overlap 1617642 CCTCCAATAAAAAAA CTGCAAACCT TCAT AGGATTGCAG TTTAATATTTAGAAT TERM 2004 1617642 - 1617665 + r 90 -9.6 -4.00934 | opp_overlap 1617642 CCTCCAATAAAAAAA CTGCAAACCT TCAT AGGATTGCAG TTTAATATTTAGAAT TERM 2005 1617881 - 1617862 - R 100 -10 -5.79595 | GTTGAAAACAAAAAA GCCGAGAC AAAA GTCTCGAC TAAAGTTTAAATATT sceE'' 1618371 - 1617895 - | truncated SceE precursor (fragment 2) sceE' 1618519 - 1618301 - | truncated SceE precursor (fragment 1) TERM 2006 1618653 - 1618687 + r 100 -12.2 -4.71061 | opp_overlap 1618653 TATGTATTACAAAAA GCGGATTCCACTCTTA GAA TAAGAACGGAGTCCGC TTTTTGGATGTAAAT TERM 2007 1618687 - 1618653 - R 100 -14.4 -4.9218 | opp_overlap 1618653 TATGTATTACAAAAA GCGGATTCCACTCTTA GAA TAAGAACGGAGTCCGC TTTTTGGATGTAAAT sceA 1619451 - 1618738 - | SceA precursor TERM 2008 1619620 - 1619590 - R 100 -15.6 -5.40464 | TATTACAAACAAAAA GCGGATTACCATCC ATA GAATGATAATCCGC TCTCAAATTAATTGC sceD 1620362 - 1619664 - | SceD precursor TERM 2009 1620732 - 1620706 - R 93 -8.1 -5.1615 | TCAAGACCCAAAAAA GACCCCACATA ATTAA TATGTAGAGTC TGGATGAGTATTTTC ssb 1621330 - 1620893 - | single strand DNA-binding protein Sca_1601 1621519 - 1621968 + | hypothetical protein TERM 2010 1622013 - 1621974 - T 95 -7.5 -5.97979 | gap 2, opp_overlap 1621974 1621975, overlap 1621975 AGAAGAATAAAAAAA CGCGTTATACTTTATCATG TTTC CATGA-AA-GTATAACGCA TTTTTTTATACATCT TERM 2011 1621974 - 1622013 + T 86 -5.3 -5.65177 | gap 2, opp_overlap 1621974 1621975, overlap 1621975 AGAAGAATAAAAAAA CGCGTTATACTTTATCATG TTTC CATGA-AA-GTATAACGCA TTTTTTTATACATCT TERM 2012 1621975 - 1622012 + T 82 -8.8 -3.9748 | gap 2, opp_overlap 1621975 1621974, overlap 1621974 GAAGAATAAAAAAAC GCGTTATACTTTATCATG TTTC CATGA-AA-GTATAACGC ATTTTTTTATACATC TERM 2013 1622012 - 1621975 - T 83 -8.8 -4.15127 | gap 2, opp_overlap 1621974 1621975, overlap 1621974 GAAGAATAAAAAAAC GCGTTATACTTTATCATG TTTC CATGA-AA-GTATAACGC ATTTTTTTATACATC fabZ 1622456 - 1622019 - | putative hydroxymyristoyl-(acyl carrier protein) dehydratase murA 1623932 - 1622661 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 TERM 2014 1623507 - 1623493 - G 78 -3.6 -5.26119 | overlap 1623494 TCTGCAAAAATAAAA CCATTT TCT AAATGA ATTTCTGCACCAAGT Sca_1604 1624276 - 1624043 - | hypothetical protein TERM 2015 1624442 - 1624412 - R 100 -13.6 -5.59564 | opp_overlap 1624412 1624409 1624414, overlap 1624434 ATAAAGCGAAAAAAA TAGGATATATCTCA TTT TGAAATATATCCTA TAATTAATGGTGCAT TERM 2016 1624412 - 1624442 + r 85 -11.4 -2.80195 | opp_overlap 1624412 1624434, overlap 1624409 1624414 ATAAAGCGAAAAAAA TAGGATATATCTCA TTT TGAAATATATCCTA TAATTAATGGTGCAT TERM 2017 1624414 - 1624440 + r 77 -9.6 -2.94695 | opp_overlap 1624412 1624434, overlap 1624412 1624409 AAAGCGAAAAAAATA GGATATATCTCA TTT TGAAATATATCC TATAATTAATGGTGC atpE 1624864 - 1624457 - | ATP synthase epsilon chain atpD 1626300 - 1624885 - | ATP synthase beta chain atpG 1627186 - 1626323 - | ATP synthase gamma chain atpA'' 1628589 - 1627222 - | truncated ATP synthase alpha chain (fragment 2) TERM 2018 1627286 - 1627296 + g 70 -5.4 -4.42594 | overlap 1627278 1627286 ATTGCTTCTTTATCT GGTA AAG TACC TTTGTCTTTGATTTG atpA' 1628731 - 1628579 - | truncated ATP synthase alpha chain (fragment 1) atpH 1629294 - 1628755 - | putative ATP synthase delta chain atpF 1629818 - 1629294 - | ATP synthase B chain atpE 1630146 - 1629934 - | putative ATP synthase C chain atpB 1630915 - 1630190 - | ATP synthase A chain mnaA 1632611 - 1631460 - | UDP-GlcNAc 2-epimerase upp 1633422 - 1632793 - | uracil phosphoribosyl transferase glyA 1634685 - 1633447 - | serine hydroxymethyl transferase Sca_1617 1635238 - 1634711 - | hypothetical protein Sca_1618 1635808 - 1635383 - | hypothetical protein Sca_1619 1636851 - 1635805 - | hypothetical protein TERM 2019 1636939 - 1636893 - R 95 -8.3 -5.56372 | gap 1 AAAGCAAAAGAAAAA GTTATGCGAGAATCAGGAATTT AATA ACATTCCCAACTCTC-CATAAC TTTTTATACAGATTT Sca_1620 1637767 - 1636943 - | hypothetical protein prfA 1638851 - 1637775 - | peptide chain release factor 1 TERM 2020 1638258 - 1638240 - G 78 -10.4 -3.05384 | overlap 1638242 1638244 TTCTGCTTCAGGCAA TACAGCAA CTG TTGCTGTA GAAGTATGAATACGG TERM 2021 1638256 - 1638242 - G 70 -8.6 -3.08679 | overlap 1638240 1638244 CTGCTTCAGGCAATA CAGCAA CTG TTGCTG TAGAAGTATGAATAC tdk 1639450 - 1638851 - | thymidine kinase TERM 2022 1639553 - 1639570 + r 100 -12.7 -3.62591 | opp_overlap 1639553 GACAAAATAAAAAAA CTCCCGC CAAA GCGGGAG TTTCGAAATTCTAAA TERM 2023 1639570 - 1639553 - R 100 -12.7 -6.14618 | opp_overlap 1639553 GACAAAATAAAAAAA CTCCCGC CAAA GCGGGAG TTTCGAAATTCTAAA rpmE 1639849 - 1639586 - | 50S ribosomal protein L31 rho 1641297 - 1639981 - | transcription termination factor Rho TERM 2024 1640691 - 1640702 + g 71 -4.4 -4.73614 | overlap 1640687 GTTTATTTGTTGTAA TTGC ATTT GCAA TTTCTTTTAATAATG TERM 2025 1641476 - 1641458 - R 100 -10.3 -5.4593 | opp_overlap 1641461 TTAAAATAATAAAAA CCAGGGA ATTAA TCCCTGG TTCAGAACTTAAAAC Sca_1625 1642941 - 1641514 - | putative aldehyde dehydrogenase family protein TERM 2026 1643057 - 1643031 - R 95 -6.7 -6.09196 | opp_overlap 1643031 1643044 CTCAAAACAAAAAAA CAGTACATTCA AATAA TGAACATACTG TTTGTTATTTATACT Sca_1626 1643401 - 1643066 - | hypothetical protein murA2 1644725 - 1643466 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 2027 1645228 - 1645208 - R 100 -10.5 -5.1675 | opp_overlap 1645206 1645208 CGACGCACGAAAAAA GAGCACCTT CTA AAGATGCTC TCTTGATTAAAATGC TERM 2028 1645208 - 1645228 + r 72 -8.3 -3.24825 | opp_overlap 1645208, overlap 1645206 CGACGCACGAAAAAA GAGCACCTT CTA AAGATGCTC TCTTGATTAAAATGC fbaA 1646110 - 1645253 - | fructose-bisphosphate aldolase TERM 2029 1645350 - 1645334 - G 70 -8.1 -3.34517 | opp_overlap 1645334 1645333, overlap 1645332 AGCTGGTCCTAAATA TTTACGA GGA TCGTAAA CTTCTTTATCGTTGT TERM 2030 1646038 - 1646062 + g 78 -3.6 -5.28942 | ATTCTAGGTTGTTCA GGTTATATTG ACCAA CAGCATAACC TTTTTCTTTCGCATC TERM 2031 1646127 - 1646139 + H 73 -9.1 -2.55019 | overlap 1646126 1646123 AAAGTTCCTCCTTGA GTGCG TCG CGCAC GTGATTTTTACACTT Sca_1629 1646414 - 1646947 + | hypothetical protein TERM 2032 1646943 - 1646990 + T 100 -13.8 -3.11207 | gap 1, opp_overlap 1646953, overlap 1646953 ACTTAGATCCAAATG CATAAATAAACGCATCTCCTATT TTG AAT-GGAGATGCGTTTTTATATG TCTAATTATTTATTT TERM 2033 1646953 - 1646980 + T 100 -12.2 -5.07275 | gap 1, opp_overlap 1646953, overlap 1646943 AAATGCATAAATAAA CGCATCTCCTATT TTG AAT-GGAGATGCG TTTTTATATGTCTAA TERM 2034 1646980 - 1646953 - T 100 -12.2 -4.59993 | gap 1, opp_overlap 1646943 1646953 AAATGCATAAATAAA CGCATCTCCTATT TTG AAT-GGAGATGCG TTTTTATATGTCTAA pyrG 1648615 - 1646996 - | CTP synthase TERM 2035 1648752 - 1648785 + r 85 -11.1 -3.05997 | gap 1, opp_overlap 1648752, overlap 1648747 AAAAAAATTAAAAAA CGCTCCCTC-TCACAT CAC ATGTAAAGGGGGAGCG TATGGTTTATACACG TERM 2036 1648785 - 1648752 - R 100 -11.1 -5.62552 | gap 1, opp_overlap 1648752 1648747 AAAAAAATTAAAAAA CGCTCCCTC-TCACAT CAC ATGTAAAGGGGGAGCG TATGGTTTATACACG Sca_1631 1649411 - 1648857 - | hypothetical protein TERM 2037 1649091 - 1649117 + g 95 -8.1 -4.78149 | AAGATTTTTATCTTC TTCGTCATCTT CATCT AAGATGTCGAA TTTTTGGATTGTCGG Sca_1632 1650400 - 1649540 - | hypothetical protein TERM 2038 1649854 - 1649878 + g 79 -8.5 -4.12188 | overlap 1649858 TATCTATTTCCTTAT CAGGTTGCGCT TCT GGCGCAATCAG TTTTAAGGATGATAC TERM 2039 1650243 - 1650229 - G 71 -8.6 -3.15544 | CTTTATCTTTATTAA TTGCGA TAT TCGCAA TACGGTCCTCATCCT Sca_1633 1650837 - 1650472 - | hypothetical protein Sca_1634 1650926 - 1651732 + | hypothetical protein TERM 2040 1651763 - 1651738 - T 100 -9.7 -5.52384 | opp_overlap 1651738 GGCTGAGTAAAAAAA TCCGCGACCTA TAAT CAGGTTGCGGA TTTTTCTTTTAATAT TERM 2041 1651738 - 1651763 + T 100 -11.2 -5.52079 | opp_overlap 1651738 GGCTGAGTAAAAAAA TCCGCGACCT ATAATC AGGTTGCGGA TTTTTCTTTTAATAT Sca_1635 1652437 - 1651772 - | hypothetical protein TERM 2042 1652556 - 1652529 - R 88 -9.3 -4.08221 | opp_overlap 1652529 1652525 1652533, overlap 1652533 TTGAATATAACTAAA TAAACCAACAG AATAAA CTGCTGGTTTA TTAATATTCTTCATT TERM 2043 1652552 - 1652533 - R 73 -5.7 -4.60886 | opp_overlap 1652529 1652525 1652533, overlap 1652529 ATATAACTAAATAAA CCAACAG AATAAA CTGCTGG TTTATTAATATTCTT Sca_1636 1654954 - 1652570 - | putative bifunctional protein luxS 1655240 - 1655704 + | LuxS TERM 2044 1655728 - 1655780 + T 100 -24 -3.02263 | opp_overlap 1655728 1655732, overlap 1655732 TTAATAATAAGTAAA TAAATAGAGACTCCGGTAGTGAAA AATCA TTTCATTATCGGAGTCTCTATTTA TATTAAAAAGGATAT TERM 2045 1655780 - 1655728 - T 100 -19.6 -4.14945 | opp_overlap 1655728 1655732, overlap 1655732 TTAATAATAAGTAAA TAAATAGAGACTCCGGTAGTGAAA AATCA TTTCATTATCGGAGTCTCTATTTA TATTAAAAAGGATAT TERM 2046 1655732 - 1655776 + T 100 -20.4 -4.1891 | opp_overlap 1655732 1655728, overlap 1655728 TAATAAGTAAATAAA TAGAGACTCCGGTAGTGAAA AATCA TTTCATTATCGGAGTCTCTA TTTATATTAAAAAGG TERM 2047 1655776 - 1655732 - T 100 -16 -4.62392 | opp_overlap 1655728 1655732, overlap 1655728 TAATAAGTAAATAAA TAGAGACTCCGGTAGTGAAA AATCA TTTCATTATCGGAGTCTCTA TTTATATTAAAAAGG fmhA'' 1656886 - 1655861 - | truncated putative FmhA protein (fragment 2) fmhA' 1657113 - 1657012 - | truncated putative FmhA protein (fragment 1) TERM 2048 1657251 - 1657222 - R 100 -10.2 -5.4505 | opp_overlap 1657222 TTGTGCAATAAAAAA GTATACCTTCTC AAAAAA GAAAAGGTATAC TTTAGAATAATTTCT TERM 2049 1657222 - 1657251 + r 72 -8 -3.65754 | opp_overlap 1657222 TTGTGCAATAAAAAA GTATACCTTCTC AAAAAA GAAAAGGTATAC TTTAGAATAATTTCT dra 1657930 - 1657268 - | deoxyribose-phosphate aldolase deoD 1658155 - 1658862 + | purine nucleoside phosphorylase Sca_1642 1658946 - 1658848 - | hypothetical protein TERM 2050 1658915 - 1658893 - G 88 -5.5 -5.61596 | opp_overlap 1658893 ATCCTGATAAAAAAA GTGCGAACC GAAAA AGTGCGCAC TTTTTTTATCATTTT TERM 2051 1658893 - 1658915 + g 88 -4.8 -5.77632 | opp_overlap 1658893 ATCCTGATAAAAAAA GTGCGAAC CGAAAAA GTGCGCAC TTTTTTTATCATTTT Sca_1643 1659685 - 1658924 - | hypothetical protein TERM 2052 1659832 - 1659805 - R 95 -7.2 -5.79595 | opp_overlap 1659805 TTTCAAAATAAAAAA CTCTTACTTT TAAAAAAT AAAGTAAGAG TTTGATATATGCCCA TERM 2053 1659805 - 1659832 + r 74 -7.2 -3.88498 | opp_overlap 1659805 TTTCAAAATAAAAAA CTCTTACTTT TAAAAAAT AAAGTAAGAG TTTGATATATGCCCA dps 1660315 - 1659869 - | general stress protein 20U Sca_1645 1661056 - 1660673 - | hypothetical protein TERM 2054 1661142 - 1661186 + r 100 -19.1 -3.75738 | opp_overlap 1661142 AACACATACAAAAAA GATTGACTATTTATGTCTT CATTAAA AAGACATAAATAGTCAATC TTATTACTAATCGTG TERM 2055 1661186 - 1661142 - R 100 -19.8 -5.46276 | opp_overlap 1661142 AACACATACAAAAAA GATTGACTATTTATGTCTTC ATTAA AAAGACATAAATAGTCAATC TTATTACTAATCGTG Sca_1646 1662569 - 1661193 - | hypothetical protein Sca_1647 1662930 - 1662700 - | hypothetical protein Sca_1648 1663896 - 1662958 - | putative mannose-6-phosphate isomerase TERM 2056 1664310 - 1664292 - R 77 -9 -3.68244 | ATGATTAATGTCAAA TGAATAAC CTA GTTATTCA GATCGATAAAAAATT TERM 2057 1664360 - 1664334 - R 83 -9.6 -3.5771 | opp_overlap 1664334 AAAAATTTGCGCAAA GACCTAAACT ACGGAAA AGTTTAGGTC TTTTAAAATACAAAA TERM 2058 1664334 - 1664360 + r 91 -9.6 -4.13767 | opp_overlap 1664334 AAAAATTTGCGCAAA GACCTAAACT ACGGAAA AGTTTAGGTC TTTTAAAATACAAAA Sca_1649 1665151 - 1664453 - | hypothetical protein TERM 2059 1665384 - 1665343 - R 100 -9.7 -4.7189 | AAAATAGACACAAAA CACACCGCTATTTTGAA TAAACAGT CTCAAAATAACGATGTG ATATAAAGTAGTTCA Sca_1650 1666089 - 1665427 - | hypothetical protein czrA 1666252 - 1666557 + | putative repressor protein czrB 1666581 - 1667522 + | putative cation-efflux system membrane protein TERM 2060 1667565 - 1667528 - T 95 -7.9 -5.58454 | opp_overlap 1667528 1667558 TGCACATTAAAAAAA TCCTTTGCATCCTCA TTAAACTG TAATGATGCAAAGGA TTTTTGCTATTGTAT TERM 2061 1667528 - 1667565 + T 80 -6.4 -4.9181 | opp_overlap 1667528, overlap 1667558 TGCACATTAAAAAAA TCCTTTGCATCCTCAT TAAACT GTAATGATGCAAAGGA TTTTTGCTATTGTAT Sca_1653 1668306 - 1667572 - | hypothetical protein TERM 2062 1668568 - 1668552 - g 71 -8.7 -3.2794 | TTGCATTTACATTAA TGCCCGT GCA ACAGGCA CTACAAATGTTTATG Sca_1654 1668437 - 1669621 + | hypothetical protein TERM 2063 1669659 - 1669699 + T 100 -20.1 -5.34632 | opp_overlap 1669659 1669664, overlap 1669664 AATTCTAGTCTCAAA TAAAAGTCGGTGAAAACCT CAA AAGTTTTCACCGACTTTTA TTTTTATGTTTTATT TERM 2064 1669699 - 1669659 - T 100 -22.3 -3.5764 | opp_overlap 1669659 1669664, overlap 1669664 AATTCTAGTCTCAAA TAAAAGTCGGTGAAAACCT CAA AAGTTTTCACCGACTTTTA TTTTTATGTTTTATT TERM 2065 1669694 - 1669664 - T 100 -17.8 -4.87803 | opp_overlap 1669664 1669659, overlap 1669659 TAGTCTCAAATAAAA GTCGGTGAAAACCT CAA AAGTTTTCACCGAC TTTTATTTTTATGTT TERM 2066 1669664 - 1669694 + T 100 -15.6 -5.40873 | opp_overlap 1669659 1669664, overlap 1669659 TAGTCTCAAATAAAA GTCGGTGAAAACCT CAA AAGTTTTCACCGAC TTTTATTTTTATGTT Sca_1655 1670564 - 1669710 - | hypothetical protein Sca_1656 1671872 - 1670763 - | putative transposase TERM 2067 1672053 - 1672066 + r 76 -2.5 -5.6473 | GGAAATAGTTCTCCC TAATT TTCC AATTA TTTTTTTAGTCTTAT TERM 2068 1672262 - 1672239 - R 100 -11.8 -5.59357 | opp_overlap 1672238, overlap 1672257 ATCATATTAAAAAAA CTGTCACCTC ATTA GAAGTGACAG CTAATGTCAAAAATT glmS 1674081 - 1672276 - | putative glucosamine-fructose-6-phosphate aminotransferase mtlA 1674783 - 1676330 + | PTS system, mannitol-specific IIBC component Sca_1659 1676367 - 1678400 + | hypothetical protein mtlF 1678407 - 1678841 + | PTS system, mannitol-specific IIA component TERM 2069 1678867 - 1678898 + G 84 -11 -3.62572 | gap 1, opp_overlap 1678872, overlap 1678871 1678872 TCATTTCGGAGCCGG GAATATTGGCCGAGG TTT CATCGGCCAA-ATTC TTTCAGATAATAATG TERM 2070 1678871 - 1678895 + G 77 -8.5 -3.94634 | opp_overlap 1678872, overlap 1678867 1678872 TTCGGAGCCGGGAAT ATTGGCCGAGG TTT CATCGGCCAAA TTCTTTCAGATAATA TERM 2071 1678872 - 1678894 + G 85 -12 -2.96298 | opp_overlap 1678872, overlap 1678871 1678867 TCGGAGCCGGGAATA TTGGCCGAGG TTT CATCGGCCAA ATTCTTTCAGATAAT TERM 2072 1678894 - 1678872 - g 85 -12 -3.03124 | opp_overlap 1678871 1678867 1678872 TCGGAGCCGGGAATA TTGGCCGAGG TTT CATCGGCCAA ATTCTTTCAGATAAT mtlD 1678841 - 1679944 + | mannitol-1-phosphate 5-dehydrogenase TERM 2073 1679953 - 1679992 + F 88 -4.4 -5.72254 | opp_overlap 1679952 1679955, overlap 1679955 ACTTTAATTAAAAAT AAGACTGTTCATTCAT CTTTAACC GTGAATGACCAGTCTA TTTTTTATTGTTTAG TERM 2074 1679955 - 1679990 + F 76 -7 -4.47161 | opp_overlap 1679952 1679955, overlap 1679953 TTTAATTAAAAATAA GACTGTTCATTCAT CTTTAACC GTGAATGACCAGTC TATTTTTTATTGTTT TERM 2075 1679990 - 1679955 - f 76 -6.3 -4.53777 | opp_overlap 1679955 1679953, overlap 1679952 TTTAATTAAAAATAA GACTGTTCATTCA TCTTTAACCG TGAATGACCAGTC TATTTTTTATTGTTT TERM 2076 1680175 - 1680189 + G 74 -4.2 -5.05301 | overlap 1680176 CACACATCTTAGTTG CTGCAG CCT CTGCAC TTTTTCTAATTATTT TERM 2077 1680612 - 1680584 - g 73 -3.3 -5.1101 | TCATCATGTAAAAAA TATCAATATTCAA ATT CTAAAAATTGATA AAGAGACTATTACGA Sca_1662 1680054 - 1680725 + | hypothetical protein TERM 2078 1680728 - 1680756 + T 91 -8.8 -4.74518 | opp_overlap 1680728 GATGGTAAGATAAAA CGGACTGGACAC ACATC GTATCCAGCCCG TTTATTTTAATGATT TERM 2079 1680756 - 1680728 - T 100 -13.9 -4.67608 | opp_overlap 1680728 GATGGTAAGATAAAA CGGACTGGACACA CAT CGTATCCAGCCCG TTTATTTTAATGATT glmM 1682130 - 1680775 - | phosphoglucosamine-mutase TERM 2080 1681431 - 1681445 + g 71 -4.3 -4.73388 | AGCCGAAATCACTTT CTGTT TCTAC AACAG TTTTTGCTAGAGCTT Sca_1664 1683092 - 1682160 - | hypothetical protein Sca_1665 1683900 - 1683094 - | hypothetical protein TERM 2081 1684082 - 1684065 - R 100 -9.9 -5.70829 | AAGAGTATAAAAAAA GCACTCT TAAA AGAGTGC TAACAGTGAGCCATA TERM 2082 1687416 - 1687435 + r 90 -10.8 -3.66803 | opp_overlap 1687415 1687414, overlap 1687427 GAGTGTCCTACAACC CCAATGAG CAAG CTCATTGG TTTGGGCTCTTCCCG TERM 2083 1687738 - 1687752 + r 70 -8.6 -2.56715 | overlap 1687745 ATGTGAGTAATCTTC TTTGCC ATC GGCAAA TCGATTACTAGCGAT TERM 2084 1688010 - 1688027 + r 70 -8.5 -3.18065 | GTCACGTTAATCCGT CAGTTTC TATT GAAACTG TTCCGTATATATCCT TERM 2085 1688962 - 1688980 + r 71 -8.8 -2.75963 | overlap 1688961 AGTTTCCAATGACCC TCCACGGT TGA GCCGTGGG CTTTCACATCAGACT TERM 2086 1689393 - 1689414 + r 100 -13.1 -3.224 | overlap 1689392 AAAACCGTCTTTCAT TGCAGAACC ATGC GGTTCTGCA TATTATCCGGCATTA TERM 2087 1689645 - 1689656 + r 71 -5.8 -4.39696 | opp_overlap 1689645 TAATTTGTTTTAAAA CGTC CTAA GACG TTTGTTAATTTGGAA TERM 2088 1690029 - 1689980 - R 90 -4.5 -5.67967 | opp_overlap 1689993, overlap 1689993 AGGATTATAAAAAAA TGCAAGAGAAAAACGCATATTTT TTTT AAAACATGCGTTTTTCTTGTTTA GCATTCTATTTCATT TERM 2089 1689993 - 1690016 + r 89 -6.8 -5.38549 | opp_overlap 1689993 1689980 AATGCAAGAGAAAAA CGCATATTTT TTTT AAAACATGCG TTTTTCTTGTTTAGC TERM 2090 1690016 - 1689993 - R 100 -9 -5.1167 | opp_overlap 1689993, overlap 1689980 AATGCAAGAGAAAAA CGCATATTTT TTTT AAAACATGCG TTTTTCTTGTTTAGC Sca_1666 1691102 - 1690035 - | hypothetical protein TERM 2091 1691216 - 1691255 + r 72 -5.1 -4.83518 | opp_overlap 1691219, overlap 1691217 1691219 CACTTTATTTACAAA AAACCAGTAAAAACACC CAAAAA GCTGTTTTTACTGGTAA TTTTATGTTCTTATT TERM 2092 1691217 - 1691254 + r 76 -8.6 -3.47671 | opp_overlap 1691219, overlap 1691216 1691219 ACTTTATTTACAAAA AACCAGTAAAAACACC CAAAAA GCTGTTTTTACTGGTA ATTTTATGTTCTTAT TERM 2093 1691252 - 1691219 - R 100 -11.9 -5.28176 | opp_overlap 1691217 1691216 1691219 TTTATTTACAAAAAA CCAGTAAAAACACCC AAAA AGCTGTTTTTACTGG TAATTTTATGTTCTT TERM 2094 1691219 - 1691252 + r 93 -11.2 -3.28651 | opp_overlap 1691219, overlap 1691217 1691216 TTTATTTACAAAAAA CCAGTAAAAACACC CAAAAA GCTGTTTTTACTGG TAATTTTATGTTCTT Sca_1667 1692718 - 1691270 - | hypothetical protein TERM 2095 1691440 - 1691463 + g 80 -10.4 -3.4252 | overlap 1691441 CACCTGCATGAGGTT TTGGAGCAAA CGCT TTTGCTCCAG TTGTCATAAGTGCAA TERM 2096 1691441 - 1691462 + g 81 -11.7 -2.65298 | overlap 1691440 ACCTGCATGAGGTTT TGGAGCAAA CGCT TTTGCTCCA GTTGTCATAAGTGCA Sca_1668 1693265 - 1692798 - | hypothetical protein TERM 2097 1693341 - 1693362 + r 100 -13.1 -3.07994 | opp_overlap 1693341, overlap 1693343 AGCAATAAATTAAAA TATCCCGCT TCGC AGCGGGATA TTCACTAAGCTTCAG TERM 2098 1693362 - 1693341 - R 100 -13.1 -4.68846 | opp_overlap 1693341 1693343 AGCAATAAATTAAAA TATCCCGCT TCGC AGCGGGATA TTCACTAAGCTTCAG TERM 2099 1693343 - 1693360 + r 91 -11.3 -3.09803 | opp_overlap 1693341, overlap 1693341 CAATAAATTAAAATA TCCCGCT TCGC AGCGGGA TATTCACTAAGCTTC Sca_1669 1694704 - 1693367 - | hypothetical protein TERM 2100 1694809 - 1694758 - R 79 -7.1 -4.51812 | gap 2, opp_overlap 1694761 1694770 1694776 TCTTACAATAAGAAA GAGGTTGAAATGGTTAAATAACAAA TTGG CTTGTTATTTAAA-ATTTCA-CCTC TCATGCTTATCCTTA Sca_1670 1695505 - 1694822 - | putative hemolysin III Sca_1671 1696719 - 1695526 - | hypothetical protein Sca_1672 1697439 - 1696924 - | hypothetical protein TERM 2101 1697412 - 1697426 + g 71 -4.2 -4.83269 | opp_overlap 1697412 TACCAATTAAAAACC CGCATG AGA TGTGCG TTTTTCCTGTCATCT Sca_1673 1697629 - 1697886 + | hypothetical protein TERM 2102 1697937 - 1697888 - T 70 -5.2 -4.57304 | gap 1, opp_overlap 1697896, overlap 1697893 1697895 1697896 AGTTAACGAAATAAA TGAAAGA-CGAAGCGACCACA AACGCAACA TGTGGCCGCTTCTTTTTTTCA TATTATAAGTATTTA TERM 2103 1697929 - 1697895 - T 74 -7.9 -3.72091 | opp_overlap 1697896, overlap 1697893 1697888 1697896 GAAATAAATGAAAGA CGAAGCGACCACA AACGCAACA TGTGGCCGCTTCT TTTTTTCATATTATA TERM 2104 1697896 - 1697928 + T 100 -9.2 -5.6473 | opp_overlap 1697896 1697895 1697893 1697888 AAATAAATGAAAGAC GAAGCGACCACA AACGCAACA TGTGGCCGCTTC TTTTTTTCATATTAT TERM 2105 1697928 - 1697896 - T 85 -11.4 -2.81628 | opp_overlap 1697896, overlap 1697895 1697893 1697888 AAATAAATGAAAGAC GAAGCGACCACA AACGCAACA TGTGGCCGCTTC TTTTTTTCATATTAT Sca_1674 1698089 - 1697940 - | hypothetical protein Sca_1675 1698913 - 1698080 - | hypothetical protein TERM 2106 1698884 - 1698898 + g 71 -4.2 -4.73105 | opp_overlap 1698883 1698884, overlap 1698885 TAAATCGAAAAACAG TTCAGC CAT GCTGAC TTCTTTTTTCTCCAT Sca_1676 1699082 - 1699426 + | hypothetical protein TERM 2107 1699434 - 1699467 + T 100 -15.5 -5.07486 | opp_overlap 1699434 TAGAATAGCAAAAAA GGAGTGCACTCAT GCAATTCA ATGAGTGCACTCC TTTTTGTTAGAAATA TERM 2108 1699467 - 1699434 - T 100 -15.5 -5.30189 | opp_overlap 1699434 TAGAATAGCAAAAAA GGAGTGCACTCAT GCAATTCA ATGAGTGCACTCC TTTTTGTTAGAAATA Sca_1677 1700844 - 1699474 - | hypothetical protein TERM 2109 1701093 - 1701064 - R 86 -7.2 -5.28176 | opp_overlap 1701064 TGCATGCATAAAAAA GAAACGCTTCTC AATAAA GAGAAACGATTC TTCGTATTTACTACA Sca_1678 1702066 - 1701104 - | putative FecCD transport family protein Sca_1679 1703094 - 1702063 - | putative FecCD transport family protein TERM 2110 1703038 - 1703009 - G 91 -5.8 -5.44638 | gap 1, overlap 1703011 ACAATAAAAAGAAAA CA-CACACTCCCT ATAAA AAGGAGCGTGGTG CGTTTTCTTTGTTTC TERM 2111 1703035 - 1703011 - G 83 -8.6 -4.3115 | overlap 1703009 AATAAAAAGAAAACA CACACTCCCT ATAAA AAGGAGCGTG GTGCGTTTTCTTTGT fecB 1704110 - 1703109 - | putative ferrichrome ABC transporter (binding protein) TERM 2112 1704355 - 1704335 - R 100 -11.9 -5.0538 | TTTTATTTCAAAAAA CCGAGCATT TAA AATGCCCGG TCACTCTTGCAGTAT Sca_1681 1705458 - 1704388 - | hypothetical protein Sca_1682 1707218 - 1705461 - | hypothetical protein TERM 2113 1706578 - 1706600 + g 71 -4.8 -4.67552 | opp_overlap 1706566 AAATCAGGATCAAGT GATGCTGAAG TGG CTATGGCATC TTCTTTTTTAATCAG TERM 2114 1706975 - 1706986 + g 74 -4.4 -4.94262 | TCAATAATTGTTCAA GTGT CTGC ACAC TTTCTTTTTGGTCTC Sca_1683 1708390 - 1707215 - | hypothetical protein TERM 2115 1708837 - 1708847 + G 86 -5.4 -5.3658 | TTGATCGTATTGATA TGGA AGG TCCA TTTTATTTTTCTGAT TERM 2116 1710320 - 1710304 - g 71 -5.1 -4.54343 | overlap 1710306 ACAAATTTAAAGAAA TGCGTGA AAC TCACGAA ATTGATGAAGCACGT Sca_1684 1708497 - 1710467 + | hypothetical protein TERM 2117 1710540 - 1710496 - T 77 -4.6 -5.27335 | opp_overlap 1710497 1710499, overlap 1710499 GTCTTCAAATAAAAA TAACCCTATAAAGCAATTA-CT AAA AGATAAAGGCTTTATAGGG-TA TTTCTATGTCCAAAA TERM 2118 1710497 - 1710540 + T 70 -6.2 -4.12532 | gap 1, opp_overlap 1710496 1710499, overlap 1710499 TCTTCAAATAAAAAT AACCCTATAAAGCAATTA-CT AAA AGATAAAGGCTTTATAGGGTA TTTCTATGTCCAAAA TERM 2119 1710538 - 1710499 - T 91 -8.8 -4.72696 | gap 1, opp_overlap 1710497 1710499, overlap 1710496 TTCAAATAAAAATAA CCCTATAAAGCAATTA-CT AAA AGATAAAGGCTTTATAGGG TATTTCTATGTCCAA TERM 2120 1710499 - 1710538 + T 77 -8.8 -3.65996 | gap 1, opp_overlap 1710499 1710496, overlap 1710497 TTCAAATAAAAATAA CCCTATAAAGCAATTA-CT AAA AGATAAAGGCTTTATAGGG TATTTCTATGTCCAA TERM 2121 1710559 - 1710585 + T 73 -8.8 -3.19003 | opp_overlap 1710559 CTATGTCCAAAAAAA GTGATGAACATG TAC TATGCTCATCAC TTAATAAAATATTAT TERM 2122 1710585 - 1710559 - T 100 -10.3 -5.42259 | opp_overlap 1710559 CTATGTCCAAAAAAA GTGATGAACAT GTACT ATGCTCATCAC TTAATAAAATATTAT TERM 2123 1710601 - 1710615 + T 85 -7.2 -4.86613 | opp_overlap 1710600 1710597 TTAATAAAATATTAT GGATTA TTC TAATCC TTTATTTTGGTTTTG Sca_1685 1711101 - 1710604 - | putative alkaline shock protein TERM 2124 1710847 - 1710863 + g 71 -9.5 -2.50471 | overlap 1710846 1710845 TTCTCCTACTTCTAC TGACACA CCT TGTGTCA CATTTTCAGTATTTG Sca_1686 1711401 - 1711165 - | hypothetical protein Sca_1687 1711952 - 1711413 - | hypothetical protein TERM 2125 1712104 - 1712080 - R 100 -12.3 -5.04601 | opp_overlap 1712083 TGTACAAATGAAAAA GCATAAGTCCA CTT TGAACTTATGC TTCCAATATATTACT opuD2 1713662 - 1712118 - | glycine betaine transporter opuD TERM 2126 1713268 - 1713258 - G 73 -5.4 -4.62336 | ACCCCAGTGGAAAAA TGCA AAC TGCA TAGCATCATCAATTG TERM 2127 1713819 - 1713793 - R 100 -10.2 -5.28561 | AATACATAATAAAAA GCACAACCCTCC GAT AAAGAGTTGTGC CTAACCGATTAATCC Sca_1689 1714841 - 1713828 - | hypothetical protein TERM 2128 1714126 - 1714140 + g 71 -8.6 -3.1786 | GTCGCAATATGACCT CTTGGT TTA ACCAAG TCTATCATTTTTTCG Sca_1690 1715870 - 1714854 - | putative zinc-binding dehydrogenase TERM 2129 1714946 - 1714960 + g 100 -8.6 -5.56372 | opp_overlap 1714945 1714948 GAACTTGATCAAATC CATCTG CTA CAGATG TTTTTGTTTTAATTT Sca_1691 1716818 - 1715943 - | hypothetical protein TERM 2130 1716937 - 1716916 - R 90 -7.3 -5.38047 | opp_overlap 1716916 TATGTATAGAAAAAA CGAATGAGT CAAT ACCCATCCG CTTCTTCTTACTCAT Sca_1692 1717959 - 1716952 - | putative NADP-dependent oxidoreductase TERM 2131 1718015 - 1718058 + r 73 -8.2 -3.38109 | opp_overlap 1718020, overlap 1718014 1718017 1718020 1718022 TGAGATGAGACAAAT TAAAAGACTGTGCTTGAGTG TGAG CGCTCAAACACAGTCTGATG TATATATTTTTATGT TERM 2132 1718017 - 1718056 + r 74 -8.6 -3.23488 | opp_overlap 1718020, overlap 1718015 1718014 1718020 1718022 AGATGAGACAAATTA AAAGACTGTGCTTGAGTG TGAG CGCTCAAACACAGTCTGA TGTATATATTTTTAT TERM 2133 1718020 - 1718053 + r 100 -14.7 -2.77729 | opp_overlap 1718020, overlap 1718017 1718015 1718014 1718022 TGAGACAAATTAAAA GACTGTGCTTGAGTG TGAG CGCTCAAACACAGTC TGATGTATATATTTT TERM 2134 1718053 - 1718020 - R 100 -14.7 -4.65153 | opp_overlap 1718020 1718017 1718015 1718014 1718022 TGAGACAAATTAAAA GACTGTGCTTGAGTG TGAG CGCTCAAACACAGTC TGATGTATATATTTT TERM 2135 1718022 - 1718051 + r 87 -11.5 -2.91913 | opp_overlap 1718020, overlap 1718020 1718017 1718015 1718014 AGACAAATTAAAAGA CTGTGCTTGAGTG TGAG CGCTCAAACACAG TCTGATGTATATATT Sca_1693 1718902 - 1718147 - | hypothetical protein TERM 2136 1718246 - 1718260 + g 70 -6.4 -4.12603 | overlap 1718247 TTTCGAAAAGACTTC TTCAGC ATA GCTGAG TTCTTCTTTAATACG TERM 2137 1718692 - 1718702 + g 72 -4 -4.89477 | opp_overlap 1718692 CAGACATATAATCCA CATA AGG TATG TTTTCTTCTTGCGCA ppdK 1721594 - 1718952 - | pyruvate phosphate dikinase TERM 2138 1719380 - 1719399 + g 72 -3.6 -4.91194 | CTATCATTGTACCAA TAAGATAG TTGA CTGTCTTG TTTTCTCTTTCTTCT TERM 2139 1721357 - 1721341 - G 73 -6.7 -4.28111 | opp_overlap 1721341 GATACGAGTAATAAA TTTTCAT TTG ATGAAAA TGCTTTGCCAGTTCG Sca_1695 1721814 - 1722335 + | hypothetical protein TERM 2140 1722344 - 1722365 + F 88 -8.7 -4.48987 | AGCATAAAAGTTGGA CGCTGTTGC TATA GTGACAGCG TTTTAATTATGACAA Sca_1696 1722509 - 1722988 + | hypothetical protein TERM 2141 1722998 - 1723029 + T 100 -12.6 -5.12971 | gap 1, opp_overlap 1722998 TTTTAAACTTAAAAA TCATCTTCGAATCTT TTA AAG-TTCGAAGATGA TTTTTATTCGCTATT TERM 2142 1723029 - 1722998 - T 100 -12.6 -4.81249 | gap 1, opp_overlap 1722998 TTTTAAACTTAAAAA TCATCTTCGAATCTT TTA AAG-TTCGAAGATGA TTTTTATTCGCTATT Sca_1697 1724261 - 1723044 - | hypothetical protein Sca_1698 1724887 - 1724348 - | hypothetical protein TERM 2143 1725540 - 1725554 + G 79 -7.2 -4.41494 | opp_overlap 1725540 1725539 1725542 GAGCAGCGGCAGAAT TAGGTT ATC AACCTA TTTTAATTGAAGATG Sca_1699 1725152 - 1725694 + | hypothetical protein TERM 2144 1725742 - 1725704 - T 100 -13.5 -4.7153 | gap 1, opp_overlap 1725704, overlap 1725679 AAATAATTTTAAAAA GCATGCTTATTGTAGTAT TCAA AT-CTACAACAAGCATGC TTTATTTTGTTATGA TERM 2145 1725704 - 1725742 + T 100 -11.3 -4.92812 | gap 1, opp_overlap 1725679 1725704 AAATAATTTTAAAAA GCATGCTTATTGTAGTAT TCAA AT-CTACAACAAGCATGC TTTATTTTGTTATGA Sca_1700 1727080 - 1725752 - | hypothetical protein TERM 2146 1727101 - 1727077 - G 72 -9.4 -2.60079 | gap 1 TCATCGTAGAATCCA GCATT-GGTGC AATT GCACCTAATGC AATCGCCCAGGCACC TERM 2147 1727277 - 1727252 - R 93 -5.5 -5.76633 | TCAGAGATAAAAAAA GACACTCCT TTATTTTC AGGAATGTC ACCTTTAATTAACCG Sca_1701 1727749 - 1727282 - | putative transcriptional regulator, MarR family TERM 2148 1727805 - 1727828 + r 83 -11 -2.94416 | opp_overlap 1727805 TATAACGCAAAAAAA CTCCCAGAGC ATTT GCTCTGAGAG TATATAATCGAAATC TERM 2149 1727828 - 1727805 - R 100 -13.2 -5.55698 | opp_overlap 1727805 TATAACGCAAAAAAA CTCCCAGAGC ATTT GCTCTGAGAG TATATAATCGAAATC rpsI 1728241 - 1727849 - | 30S ribosomal protein S9 rplM 1728698 - 1728261 - | 50S ribosomal protein L13 TERM 2150 1728917 - 1728930 + r 70 -3.9 -5.08169 | opp_overlap 1728917 GTCAATACGATTCAA TCATT TTCC AATGA TTTTTTACGATGTAT truA 1729716 - 1728913 - | putative tRNA pseudouridine synthase A Sca_1705 1730497 - 1729721 - | hypothetical protein Sca_1706 1731380 - 1730517 - | hypothetical protein TERM 2151 1731105 - 1731121 + g 73 -2.3 -5.252 | opp_overlap 1731105 CTGTGCTTCGGGAAA TTGAAAT ACC ATTCCAA TTTTTTGTCGCACTG Sca_1707 1732183 - 1731377 - | hypothetical protein TERM 2152 1732295 - 1732267 - R 72 -5.2 -4.77867 | opp_overlap 1732267, overlap 1732262 ACATATAAGATAAAA GCCCCTAAACGT ATACA ACCGTCAGGGGC TTTAAAAATAAAAAA rplQ 1732910 - 1732542 - | 50S ribosomal protein L17 rpoA 1733877 - 1732933 - | DNA-directed RNA polymerase alpha chain rpsK 1734352 - 1733963 - | 30S ribosomal protein S11 TERM 2153 1734081 - 1734091 + g 76 -6.8 -4.46404 | overlap 1734076 GCTGATTCACGACCA GGAC CAG GTCC TTTTACTGTTACTTC rpsM 1734741 - 1734376 - | 30S ribosomal protein S13 rpmJ 1734877 - 1734764 - | 50S ribosomal protein L36 infA 1735129 - 1734911 - | translation initiation factor IF-1 adk 1735970 - 1735320 - | adenylate kinase secY 1737279 - 1735987 - | preprotein translocase SecY subunit TERM 2154 1736933 - 1736947 + g 75 -7.2 -4.21744 | opp_overlap 1736933 AAGATAATCGCAAAA TAACGT GTA ACGTTA TTTAATTTCTTACGT TERM 2155 1736947 - 1736933 - G 75 -7.2 -4.2361 | opp_overlap 1736933 AAGATAATCGCAAAA TAACGT GTA ACGTTA TTTAATTTCTTACGT rplO 1737719 - 1737279 - | 50S ribosomal protein L15 rpmD 1737933 - 1737745 - | 50S ribosomal protein L30 rpsE 1738450 - 1737950 - | 30S ribosomal protein S5 TERM 2156 1738251 - 1738264 + g 78 -3.8 -5.32565 | ACTAAATCTTTTTTA GCAG CTTCTA CTGC TTTTTTGATTGCTTC rplR 1738834 - 1738472 - | 50S ribosomal protein L18 rplF 1739402 - 1738866 - | 50S ribosomal protein L6 TERM 2157 1738910 - 1738928 + g 71 -7.4 -3.92522 | GAACATATTCGCCTT GGTAACGG ATA CCTTTACC TTTATAAGGTTCAGG rpsH 1739826 - 1739428 - | 30S ribosomal protein S8 rpsN 1740044 - 1739859 - | 30S ribosomal protein S14 rplE 1740609 - 1740070 - | 50S ribosomal protein L5 TERM 2158 1740577 - 1740588 + g 77 -3 -5.45802 | TAAGTTCTCAGTAAC TTCA GTAT TGAA TTTTTCTTTTAAACG rplX 1740952 - 1740635 - | 50S ribosomal protein L24 rplN 1741353 - 1740985 - | 50S ribosomal protein L14 rpsQ 1741646 - 1741383 - | 30S ribosomal protein S17 rpmC 1741881 - 1741672 - | 50S ribosomal protein L29 TERM 2159 1741746 - 1741763 + g 74 -7.7 -3.89971 | CAATCGTTTTTCTTA CTGTACG AATA CGTGCAG TTTCCTCTAATTGTC rplP 1742305 - 1741871 - | 50S ribosomal protein L16 rpsC 1742961 - 1742308 - | 30S ribosomal protein S3 rplV 1743338 - 1742985 - | 50S ribosomal protein L22 rpsS 1743649 - 1743371 - | 30S ribosomal protein S19 rplB 1744547 - 1743714 - | 50S ribosomal protein L2 rplW 1744860 - 1744585 - | 50S ribosomal protein L23 rplD 1745483 - 1744860 - | 50S ribosomal protein L4 rplC 1746174 - 1745512 - | 50S ribosomal protein L3 rpsJ 1746510 - 1746202 - | 30S ribosomal protein S10 TERM 2160 1746423 - 1746437 + g 74 -2.8 -5.33785 | overlap 1746399 CTGCACCAGAACGTT TTGCTG TTT CAACAA TTTTTTCTGCTGATT Sca_1737 1746850 - 1747236 + | hypothetical protein Sca_1738 1747740 - 1747315 - | hypothetical protein TERM 2161 1747813 - 1747792 - R 100 -8.7 -5.63517 | TTTCCAAATAAAAAA GCAAGCCCC CTTA AGAGCTTGC AATAAGATTTATGTT Sca_1739 1749163 - 1747829 - | hypothetical protein TERM 2162 1748086 - 1748100 + g 84 -10 -3.71848 | CTACAATCAATGCCG GTGCTG TCA CAGCAC TTGTTACTACAGCCA TERM 2163 1748396 - 1748384 - G 74 -2.7 -5.38054 | overlap 1748395 GTCGATAAATAAAAA TGTCA AAA TAACA ATTAAGAATTGTACA topB 1751504 - 1749375 - | putative DNA topoisomerase III TERM 2164 1749776 - 1749786 + g 74 -4 -5.13137 | opp_overlap 1749776 TCTCATTCACAATAT CTTT TGT AAAG TTTTTCATTTCTTTC Sca_1741 1751652 - 1752515 + | hypothetical protein TERM 2165 1752525 - 1752557 + F 95 -8 -5.43974 | gap 2, overlap 1752553 AAATAAACACTTTAA GTTTGCC-G-TTAGAA TAA TTCTAATCCGGCAAAC TTTTTGTTTCCTTTT glcU 1752640 - 1753494 + | glucose uptake protein gdh 1753537 - 1754328 + | putative glucose 1-dehydrogenase TERM 2166 1754395 - 1754348 - T 85 -10.2 -3.64371 | opp_overlap 1754354, overlap 1754353 1754354 AATTCATATCGCAAA TAAAAGGAGCAAACATGATT GCGTTTAA AATCATGTTTGCTCTTTTTT ATTTTAATATACGTT TERM 2167 1754390 - 1754353 - T 100 -10.1 -4.89521 | opp_overlap 1754354, overlap 1754348 1754354 ATATCGCAAATAAAA GGAGCAAACATGATT GCGTTTAA AATCATGTTTGCTCT TTTTTATTTTAATAT TERM 2168 1754389 - 1754354 - T 100 -13.6 -3.52628 | opp_overlap 1754354, overlap 1754353 1754348 TATCGCAAATAAAAG GAGCAAACATGATT GCGTTTAA AATCATGTTTGCTC TTTTTTATTTTAATA TERM 2169 1754354 - 1754389 + T 100 -13.6 -5.83211 | opp_overlap 1754354 1754353 1754348 TATCGCAAATAAAAG GAGCAAACATGATT GCGTTTAA AATCATGTTTGCTC TTTTTTATTTTAATA Sca_1744 1755338 - 1754430 - | hypothetical protein Sca_1745 1755461 - 1755631 + | hypothetical protein Sca_1746 1755696 - 1756013 + | hypothetical protein TERM 2170 1756043 - 1756021 - T 100 -13.5 -4.48713 | opp_overlap 1756021 TTTATTAATAATAAA GCATCGGCT TGCGT AGCCGATGC TTTTGTTTGTTATAT TERM 2171 1756021 - 1756043 + T 100 -13.5 -5.16038 | opp_overlap 1756021 TTTATTAATAATAAA GCATCGGCT TGCGT AGCCGATGC TTTTGTTTGTTATAT Sca_1747 1757216 - 1756053 - | hypothetical protein TERM 2172 1756721 - 1756733 + g 74 -4.9 -4.7268 | TGATATTGTCTGCCC CTTTT TTC AAAAG TTTTCTTGCATATTT TERM 2173 1757073 - 1757085 + g 73 -3.4 -5.0917 | opp_overlap 1757073 ACCTGGTACAACATA CTTG TTCTT CAAG TTTATTTTTTCATCG TERM 2174 1757093 - 1757103 + g 78 -4 -5.4182 | TCTTCAAGTTTATTT TTTC ATC GAAA TTTTTGTTTGTACTT Sca_1748 1758414 - 1757236 - | hypothetical protein TERM 2175 1758150 - 1758177 + g 81 -8.5 -4.20084 | opp_overlap 1758150 1758153, overlap 1758153 CAGCCAGCGCAACTA CAACTGCTTTC CATTGA GATAGCAGTTG TTTTAAATCCATCAT TERM 2176 1758177 - 1758150 - G 72 -9.2 -2.73681 | opp_overlap 1758150 1758153, overlap 1758153 CAGCCAGCGCAACTA CAACTGCTTTCC ATTG AGATAGCAGTTG TTTTAAATCCATCAT TERM 2177 1758631 - 1758598 - R 95 -6.1 -5.8187 | gap 1 TATTGAATAAAAAAA GCGCATCCTACAATTT CTT ACATTGC-GGATACGC TTTACTAATTTTATT Sca_1749 1761800 - 1758642 - | hypothetical protein TERM 2178 1761927 - 1761904 - R 70 -5.4 -4.54753 | gap 1, opp_overlap 1761904, overlap 1761901 AAACATTAAAAATAA CTGCCATC-AT TAA ATAGATGACAG TTTAACCATTCAGAA fmhB 1763206 - 1761956 - | putative FmhB protein Sca_1751 1763319 - 1763579 + | hypothetical protein Sca_1752 1764331 - 1763576 - | hypothetical protein TERM 2179 1764481 - 1764463 - H 70 -8.2 -3.10705 | opp_overlap 1764463, overlap 1764462 1764465 ATAGATAAAGTAAAT TAGTTAGC AAA GCTAACCA TTTGTATAGAAGAAG TERM 2180 1764479 - 1764465 - H 73 -8.6 -3.0972 | opp_overlap 1764463, overlap 1764463 1764462 AGATAAAGTAAATTA GTTAGC AAA GCTAAC CATTTGTATAGAAGA TERM 2181 1764539 - 1764572 + H 70 -8.9 -2.55545 | opp_overlap 1764542, overlap 1764542 TTACTTCGTTTTCTA TAAGGGGTTGAAACA CTTT TGTCCCAACCCCTTG CTATCTTGTTAAAGG TERM 2182 1764542 - 1764569 + H 73 -8.4 -3.42378 | opp_overlap 1764542, overlap 1764539 CTTCGTTTTCTATAA GGGGTTGAAACA CTTT TGTCCCAACCCC TTGCTATCTTGTTAA TERM 2183 1764569 - 1764542 - H 100 -12.8 -3.28712 | opp_overlap 1764542 1764539 CTTCGTTTTCTATAA GGGGTTGAAACA CTTT TGTCCCAACCCC TTGCTATCTTGTTAA Sca_1753 1764599 - 1765015 + | hypothetical protein Sca_1754 1765029 - 1766225 + | hypothetical protein TERM 2184 1766274 - 1766245 - f 100 -19.5 -5.32882 | opp_overlap 1766245 TATGATTATAAAAAA GTGTCTGAAACGC TCAA GCGTTTCAGACAC TTTTTCTATACTATC TERM 2185 1766245 - 1766274 + F 100 -19.5 -5.02502 | opp_overlap 1766245 TATGATTATAAAAAA GTGTCTGAAACGC TCAA GCGTTTCAGACAC TTTTTCTATACTATC Sca_1755 1766639 - 1766980 + | hypothetical protein TERM 2186 1767034 - 1767073 + T 100 -16.6 -3.42257 | opp_overlap 1767034, overlap 1767025 CAGCGGCATAAAAAA GACCCGAATCTCATTCCT ATTT AGAAAAGAGATTCGGGTC TTCGTATCTTTAACC TERM 2187 1767073 - 1767034 - T 100 -18.8 -5.252 | opp_overlap 1767034 1767025 CAGCGGCATAAAAAA GACCCGAATCTCATTCCT ATTT AGAAAAGAGATTCGGGTC TTCGTATCTTTAACC moaA 1768105 - 1767083 - | Molybdenum cofactor biosynthesis protein A mobA 1768757 - 1768164 - | MobA ; Molybdopterin-guanine dinucleotide biosynthesis protein A TERM 2188 1768533 - 1768545 + g 79 -4.9 -5.1523 | AGAATAAATCCCAGA TAAAG GTC CTTTA TTTTTGTGTTCTGAA moaD 1768995 - 1768762 - | MoaD moaE 1769447 - 1768995 - | MoaE mobB 1769926 - 1769444 - | MobB moeA 1771182 - 1769923 - | molybdopterin biosynthesis protein MoeA moaC 1771247 - 1771732 + | Molybdenum cofactor biosynthesis protein C TERM 2189 1771792 - 1771850 + T 73 -3.5 -5.23316 | gap 2, opp_overlap 1771792 1771797, overlap 1771797 1771798 AAACAGAACAAAATA CGGAATTGTTGAGCAACAACATTTTTTAT TTA ACATAAAATGTC-T-GCTCAATGATTCCG TTTTTTCGTATCATA TERM 2190 1771798 - 1771812 + T 82 -4.3 -5.64421 | opp_overlap 1771797 1771792, overlap 1771797 1771792 AACAAAATACGGAAT TGTTG AGCAA CAACA TTTTTTATTTAACAT moaB 1772428 - 1771916 - | Molybdenum cofactor biosynthesis protein B moeB 1773461 - 1772460 - | putative molybdopterin biosynthesis protein moeB TERM 2191 1773595 - 1773559 - R 100 -13.2 -4.5002 | gap 1, opp_overlap 1773559 AAAAGATACAACAAA CCCGACAT-GCACTGAA TTCT TTCAGCACGATGTCGGG TTATGTTTCAAAATA TERM 2192 1773559 - 1773595 + r 80 -8.8 -3.82202 | gap 1, opp_overlap 1773559 AAAAGATACAACAAA CCCGACAT-GCACTGAA TTCT TTCAGCACGATGTCGGG TTATGTTTCAAAATA modC 1774221 - 1773613 - | molybdenum transport ATP-binding protein ModC TERM 2193 1773700 - 1773681 - G 70 -2.9 -5.08088 | AATGTGTAACAAAAA TAATTGG AATCTG CCAATCA TCAAACATTCTCTTA modB 1774893 - 1774222 - | molybdenum transport system permease protein ModB TERM 2194 1774638 - 1774598 - G 95 -10.5 -4.6038 | overlap 1774599 1774608 TACATTAAAGGAAAA CTTACAACAACGGACGCTA TAA CAGCGCCCGTCAATGTAAA TACTACCGGCAAATG TERM 2195 1774637 - 1774599 - G 85 -11.8 -3.35143 | overlap 1774598 1774608 ACATTAAAGGAAAAC TTACAACAACGGACGCTA TAA CAGCGCCCGTCAATGTAA ATACTACCGGCAAAT TERM 2196 1774628 - 1774608 - G 89 -11.1 -3.88601 | overlap 1774599 1774598 GAAAACTTACAACAA CGGACGCTA TAA CAGCGCCCG TCAATGTAAATACTA modA 1775690 - 1774905 - | molybdate-binding protein ModA galT 1777346 - 1775850 - | Galactose-1-phosphate uridylyltransferase GalT TERM 2197 1777259 - 1777277 + g 75 -9 -3.48024 | overlap 1777262 CTAATATTAGATTTT GAAGATAA TAA TTATCTTC TCTTTCATAATCACC galE 1778353 - 1777364 - | UDP-glucose-4-epimerase GalE galK 1779540 - 1778374 - | galactokinase GalK galR 1780628 - 1779630 - | Galactose operon repressor GalR Sca_1773 1780774 - 1781595 + | hypothetical protein TERM 2198 1781618 - 1781570 - T 100 -14.2 -3.34895 | gap 1, opp_overlap 1781572, overlap 1781572 1781575 GTCATCCCGAACGAA TAGAAGCTGTCCCTTCACAAGAA TAAT TTCTTGT-AAGGCACAGCTTCTT TTTTTATATATTTTC TERM 2199 1781572 - 1781616 + T 100 -16.8 -5.82281 | gap 1, opp_overlap 1781570 1781572 1781575 CATCCCGAACGAATA GAAGCTGTCCCTTCACAAGAA TAAT TTCTTGT-AAGGCACAGCTTC TTTTTTTATATATTT TERM 2200 1781616 - 1781572 - T 100 -16.8 -3.24329 | gap 1, opp_overlap 1781572, overlap 1781570 1781575 CATCCCGAACGAATA GAAGCTGTCCCTTCACAAGAA TAAT TTCTTGT-AAGGCACAGCTTC TTTTTTTATATATTT TERM 2201 1781613 - 1781575 - T 100 -12.7 -3.76048 | gap 1, opp_overlap 1781572, overlap 1781572 1781570 CCCGAACGAATAGAA GCTGTCCCTTCACAAGAA TAAT TTCTTGT-AAGGCACAGC TTCTTTTTTTATATA Sca_1774 1782377 - 1781622 - | hypothetical protein Sca_1775 1782956 - 1782405 - | hypothetical protein Sca_1776 1783999 - 1783055 - | putative inosine-uridine preferring nucleoside hydrolase Sca_1777 1784221 - 1785369 + | hypothetical protein TERM 2202 1785397 - 1785424 + F 86 -6.4 -5.48213 | opp_overlap 1785397 CAGCATGTCACAAAA CGTTATCTTC TTAATATC GAAGATAGCG TTTTTCTTTTGCATA TERM 2203 1786425 - 1786411 - g 78 -8.6 -3.68351 | opp_overlap 1786407 TTGCCAGCAGTCAAA GATCAC CAT GTGATC AATGTTGATGCAAAA Sca_1778 1785598 - 1786512 + | putative ferrichrome binding protein precursor TERM 2204 1786513 - 1786501 - T 76 -3.5 -5.48213 | GACTTAAAAGAAAAA TTTAT GAA ATAAA CAAAATAGAGCGGAT TERM 2205 1786557 - 1786519 - T 100 -11.8 -5.20222 | opp_overlap 1786521, overlap 1786521 ATGAAATAAACAAAA TAGAGCGGATGGAACA TGAAAAT TGTTCCGTCCGCTCTT TGTTTTGTTTCAGTT TERM 2206 1786521 - 1786555 + T 100 -16.6 -4.96996 | opp_overlap 1786519 1786521 GAAATAAACAAAATA GAGCGGATGGAACA TGAAAAT TGTTCCGTCCGCTC TTTGTTTTGTTTCAG TERM 2207 1786555 - 1786521 - T 100 -14.4 -4.20284 | opp_overlap 1786521, overlap 1786519 GAAATAAACAAAATA GAGCGGATGGAACA TGAAAAT TGTTCCGTCCGCTC TTTGTTTTGTTTCAG Sca_1779 1787522 - 1786581 - | hypothetical protein TERM 2208 1786621 - 1786631 + g 78 -5.4 -5.00616 | overlap 1786610 TCTTCAGCTTTTTCA GTTG TTT CAAC TTTTTTGCCAGCAAG TERM 2209 1787035 - 1787025 - G 73 -5.4 -4.68424 | opp_overlap 1787023 1787025 1787027, overlap 1787027 GAATCCATCCAAAAA GCTT AAT AAGC TATTAATGGTATGGT ureA 1787827 - 1788129 + | urease gamma subunit ureB 1788146 - 1788559 + | urease beta subunit ureC 1788556 - 1790271 + | urease alpha subunit ureE 1790287 - 1790739 + | urease accessory protein UreE ureF 1790732 - 1791421 + | urease accessory protein UreF ureG 1791434 - 1792048 + | urease accessory protein UreG TERM 2210 1792176 - 1792190 + G 85 -10 -4.00066 | opp_overlap 1792154 1792174, overlap 1792154 TGTTTATTTAAATGG GTCGGA TAT TCCGAC TTTCTACATTGTAAA ureD 1792048 - 1792887 + | urease accessory protein UreD TERM 2211 1792893 - 1792935 + T 100 -18.1 -5.05782 | opp_overlap 1792898, overlap 1792898 AAAATATTAAAAAGC AAAAAGCTGTTCAGCATAT CATAA ATATGCTGAACAGCTTTTG TTTTTTCCCATCGAT TERM 2212 1792898 - 1792930 + T 100 -18 -5.42198 | opp_overlap 1792898, overlap 1792893 ATTAAAAAGCAAAAA GCTGTTCAGCATAT CATAA ATATGCTGAACAGC TTTTGTTTTTTCCCA TERM 2213 1792930 - 1792898 - T 100 -18.7 -5.1971 | opp_overlap 1792893 1792898 ATTAAAAAGCAAAAA GCTGTTCAGCATATC ATA AATATGCTGAACAGC TTTTGTTTTTTCCCA sarR 1793407 - 1793051 - | putative staphylococcal accessory regulator A TERM 2214 1793721 - 1793692 - R 100 -10.9 -5.63517 | opp_overlap 1793692 CCTTTAAATAAAAAA CGATGATATACCT AAAA AGATATACCATCG TTATTCATAATTTTA Sca_1788 1794106 - 1793741 - | hypothetical protein Sca_1789 1795174 - 1794125 - | putative N5,N10-methylenetetrahydromethanopterin reductase sceB 1795820 - 1796611 + | SceB precursor TERM 2215 1796659 - 1796635 - T 90 -10.1 -3.92804 | opp_overlap 1796635 TAATAAATGATTAAA CAGTTGGTACA ATT TGTATCAACTG TTTTTTTGTTTCTTA TERM 2216 1796635 - 1796659 + T 100 -12.3 -6.08342 | opp_overlap 1796635 TAATAAATGATTAAA CAGTTGGTACA ATT TGTATCAACTG TTTTTTTGTTTCTTA TERM 2217 1796730 - 1796710 - T 72 -4 -5.05113 | overlap 1796713 TTTAGAGAAATAAAA TAAGCCGA CAAAT TCGTCTTA CTGCGAATTGCCGAC Sca_1791 1797288 - 1796785 - | putative transmembrane protein TERM 2218 1796908 - 1796939 + g 74 -8.2 -3.78597 | gap 1, overlap 1796901 TAATCCTACGGCTAA TGCTG-TTGTAAGTA CCA TTCTTACAATCAGCA TTTCCATTGATGCAT TERM 2219 1797505 - 1797533 + r 100 -9 -5.9362 | opp_overlap 1797505 TAAATAAGCAAAAAA CACTTATGAATC ATAAC GTTTCATAAGTG TTTTTTTATATTTTA TERM 2220 1797533 - 1797505 - R 100 -9.7 -5.4148 | opp_overlap 1797505 TAAATAAGCAAAAAA CACTTATGAATCA TAA CGTTTCATAAGTG TTTTTTTATATTTTA Sca_1792 1798986 - 1797607 - | putative Na+/H+ antiporter Sca_1793 1800078 - 1799008 - | putative D-octopine dehydrogenase TERM 2221 1799087 - 1799109 + g 85 -12.2 -3.09581 | opp_overlap 1799082, overlap 1799089 CGTTCTAAGATTGTT GATGCAATTA CAA TAATTGCATC TATATTAGGCGTTTC TERM 2222 1799089 - 1799107 + g 70 -9 -3.10017 | opp_overlap 1799082, overlap 1799087 TTCTAAGATTGTTGA TGCAATTA CAA TAATTGCA TCTATATTAGGCGTT TERM 2223 1799850 - 1799870 + g 75 -9.9 -2.8241 | opp_overlap 1799853, overlap 1799849 1799847 1799853 GGATAATCACTTGAA TAATTTCAG CAT CTGAAATTA CTTCTTCAATATCAT Sca_1794 1800520 - 1800900 + | hypothetical protein TERM 2224 1800912 - 1800930 + F 81 -6 -5.31275 | opp_overlap 1800911 1800912 ATAAGTTTGTAAAAG CGAAGC CTTCAGC GCTTCG TTTTTTATACTCAAA Sca_1795 1801024 - 1801356 + | hypothetical protein Sca_1796 1801356 - 1801670 + | hypothetical protein Sca_1797 1801752 - 1802723 + | putative glycerate dehydrogenase TERM 2225 1802734 - 1802790 + T 100 -15.7 -5.43974 | gap 1, opp_overlap 1802747 AATAAATCACCTGTT TAAAG-ACAAAAAATCCGGAACATTC ATGATA GAGTGTTCCGGATTTTTTATACTTTA TTTTTCTTTAGTTTT TERM 2226 1802776 - 1802747 - T 100 -10.8 -5.56264 | opp_overlap 1802734 TTTAAAGACAAAAAA TCCGGAACATTC ATGATA GAGTGTTCCGGA TTTTTTATACTTTAT Sca_1798 1803912 - 1802788 - | hypothetical protein TERM 2227 1803993 - 1804006 + r 72 -8.1 -3.28906 | opp_overlap 1803993 GTTCTCACACAAAAA GAGGG TTGC CCCTC TTAAATATTTATTGC TERM 2228 1804006 - 1803993 - R 90 -8.1 -4.96848 | opp_overlap 1803993 GTTCTCACACAAAAA GAGGG TTGC CCCTC TTAAATATTTATTGC Sca_1799 1804794 - 1804015 - | hypothetical protein Sca_1800 1805067 - 1804816 - | hypothetical protein TERM 2229 1805173 - 1805140 - R 90 -7.5 -5.48825 | CATTATGTAAAAAAA GAGCTGATCCTCTTT CAAA AGATAAGATCAGCTC TAAAAGGTTGACGCA Sca_1801 1805631 - 1805191 - | hypothetical protein Sca_1802 1808614 - 1805654 - | putative formate dehydrogenase TERM 2230 1807815 - 1807830 + g 73 -6.2 -4.4261 | opp_overlap 1807800 1807815 1807817 GTACATCCCACACCA CAGTAT GTAC ATACTG TTTTCGTCTTAGACA Sca_1803 1808692 - 1808811 + | hypothetical protein TERM 2231 1809174 - 1809192 + T 80 -8.8 -3.73253 | opp_overlap 1809174 1809175, overlap 1809174 1809175 GGATTTCAAAAAAAA GCGGCATG TAA CATGCCGA CTTTTTCTATTTATC TERM 2232 1809192 - 1809174 - T 100 -8.8 -5.78622 | opp_overlap 1809174 1809174 1809175, overlap 1809175 GGATTTCAAAAAAAA GCGGCATG TAA CATGCCGA CTTTTTCTATTTATC TERM 2233 1809174 - 1809193 + T 100 -8.6 -5.24799 | gap 1, opp_overlap 1809174 1809175, overlap 1809174 1809175 GGATTTCAAAAAAAA G-CGGCATG TAA CATGCCGAC TTTTTCTATTTATCG TERM 2234 1809191 - 1809175 - T 100 -12.3 -4.06089 | opp_overlap 1809174 1809174 1809175, overlap 1809174 GATTTCAAAAAAAAG CGGCATG TAA CATGCCG ACTTTTTCTATTTAT TERM 2235 1809175 - 1809191 + T 100 -12.3 -2.82325 | opp_overlap 1809175 1809174, overlap 1809174 1809174 GATTTCAAAAAAAAG CGGCATG TAA CATGCCG ACTTTTTCTATTTAT Sca_1804 1809501 - 1809199 - | hypothetical protein TERM 2236 1809595 - 1809581 - R 86 -5 -5.58454 | opp_overlap 1809583, overlap 1809583 TTTAGAGTAAAAAAA TACCGA GAA TCAGTA AATAACCTGAAACTC Sca_1805 1810587 - 1809631 - | hypothetical protein TERM 2237 1810253 - 1810265 + g 88 -3.4 -5.9218 | GTATCACGCGGAATG CTGA CGATT TCAG TTTTTTTCTTATCTG Sca_1806 1811483 - 1810674 - | hypothetical protein TERM 2238 1811605 - 1811585 - H 100 -11.9 -5.21709 | TTTCATATTAAAAAA CCGACTAGC GAT ACTAGTCGG CATAGAAAGGAAAGT TERM 2239 1811979 - 1811966 - g 72 -3.9 -5.03145 | CAACTTGCGAAAAAA TTAGA AGTT TCTAA ACGAACAATTTTGCG Sca_1807 1811882 - 1812580 + | hypothetical protein TERM 2240 1812589 - 1812559 - T 72 -7.7 -3.68853 | gap 1, opp_overlap 1812559 CCAAAAATTTTTAAA TCCAACTGATTCTG CAAA CTGA-TCAGTTGGA TTTTTTAGTGTTCTT TERM 2241 1812559 - 1812589 + T 90 -7.7 -5.31545 | gap 1, opp_overlap 1812559 CCAAAAATTTTTAAA TCCAACTGATTCTG CAAA CTGA-TCAGTTGGA TTTTTTAGTGTTCTT Sca_1808 1813359 - 1812643 - | hypothetical protein Sca_1809 1813464 - 1813811 + | hypothetical protein Sca_1810 1814096 - 1814668 + | truncated putative RpiR family transcriptional regulator (fragment 1) Sca_1811 1814619 - 1814969 + | truncated putative RpiR family transcriptional regulator (fragment 2) TERM 2242 1814967 - 1815006 + T 100 -14.6 -4.04764 | opp_overlap 1814975, overlap 1814970 1814975 ATTGAATTTGAGCAT TAAAAAAAGAGTTGAGGC AAAT GTCTCAACTCTTTTCTTA TTTATAACTTATTTT TERM 2243 1814970 - 1815003 + T 100 -11.9 -4.11906 | opp_overlap 1814975, overlap 1814967 1814975 GAATTTGAGCATTAA AAAAAGAGTTGAGGC AAAT GTCTCAACTCTTTTC TTATTTATAACTTAT TERM 2244 1814998 - 1814975 - T 100 -9.6 -5.55664 | opp_overlap 1814970 1814967 1814975 TGAGCATTAAAAAAA GAGTTGAGGC AAAT GTCTCAACTC TTTTCTTATTTATAA TERM 2245 1814975 - 1814998 + T 100 -11.8 -5.05116 | opp_overlap 1814975, overlap 1814970 1814967 TGAGCATTAAAAAAA GAGTTGAGGC AAAT GTCTCAACTC TTTTCTTATTTATAA Sca_1812 1816406 - 1815015 - | putative amino acid transporter TERM 2246 1815336 - 1815326 - G 70 -5.4 -4.41956 | ATACATATACGAAAA TGCT GTC AGCA CCTTTGATAAACATT Sca_1813 1816562 - 1816464 - | hypothetical protein TERM 2247 1816643 - 1816623 - H 72 -6.3 -4.30576 | overlap 1816608 TTTCTATGATGAAAA CATAAAAAT TAC ACTTTTATG TATGCGCTTTCATTT TERM 2248 1816844 - 1816854 + H 82 -6.8 -4.87318 | GTCTTTTGTTTAACT GGCA ATC TGCC TTTTTGAATTTTCAG TERM 2249 1817834 - 1817856 + G 83 -7 -4.72497 | CTGCATTTCTGGCCG GCAGTGATCA ATA TTATCGCTGC TTTTATTGGTAACTA Sca_1814 1817123 - 1817944 + | hypothetical protein Sca_1815 1818011 - 1818364 + | hypothetical protein Sca_1816 1818361 - 1818543 + | hypothetical protein TERM 2250 1818595 - 1818549 - T 100 -17.6 -3.73299 | opp_overlap 1818554, overlap 1818554 AACAAAATAACAACA CAAAAGGCTTGCTTATGCTGAT AAT ATCAACAAAAGCAAGCCTTTTT CTTTATAATTTTCCT TERM 2251 1818590 - 1818554 - T 100 -17.5 -4.83518 | opp_overlap 1818554, overlap 1818549 AATAACAACACAAAA GGCTTGCTTATGCTGAT AAT ATCAACAAAAGCAAGCC TTTTTCTTTATAATT TERM 2252 1818554 - 1818590 + T 100 -15.3 -5.4182 | opp_overlap 1818549 1818554 AATAACAACACAAAA GGCTTGCTTATGCTGAT AAT ATCAACAAAAGCAAGCC TTTTTCTTTATAATT Sca_1817 1818780 - 1818598 - | hypothetical protein Sca_1818 1819428 - 1818793 - | hypothetical protein Sca_1819 1819647 - 1820183 + | hypothetical protein TERM 2253 1820197 - 1820221 + F 95 -6.5 -6.04953 | AGCAGTGATTTTTTA GAACGTTTCTT ATC ATGAAATGTTC TTTTTTTATTTGTAT TERM 2254 1820245 - 1820275 + F 85 -5.5 -5.49568 | opp_overlap 1820245 TTTGTATATACCAAA GACGATGAAAACT TCTAT ATTTTCCATCGTC TTTTTATTTTAACTT TERM 2255 1820275 - 1820245 - f 76 -7.7 -3.88498 | opp_overlap 1820245 TTTGTATATACCAAA GACGATGAAAACT TCTAT ATTTTCCATCGTC TTTTTATTTTAACTT TERM 2256 1820316 - 1820360 + F 76 -6.2 -4.59773 | gap 1, opp_overlap 1820318, overlap 1820320 AAGATCTTTTCAATC TATAT-CTTTAAAACATCT ACATATTC AGGTGTTTTAAAGAATATA TTTTTCGCAATGAGC TERM 2257 1820320 - 1820355 + F 70 -8.6 -2.71831 | opp_overlap 1820318, overlap 1820316 TCTTTTCAATCTATA TCTTTAAAACATCT ACATATTC AGGTGTTTTAAAGA ATATATTTTTCGCAA TERM 2258 1820761 - 1820781 + F 71 -7.1 -3.79419 | opp_overlap 1820760 1820761 TGTCTTTTTGTAAAT TTAATATTA AGA TAATATTAA TGTTTTGTAAAAGGA TERM 2259 1821269 - 1821281 + G 74 -7.7 -3.91144 | GTGTTAGTGAACGTG GCAGT AAA ACTGC TTTATGGAATGTCGC TERM 2260 1821983 - 1821967 - g 93 -7.9 -5.09895 | opp_overlap 1821967 TACGTACCGAAAAAA GCAGCTG GTA CGGCTGC TGGCTTAACTGGTTT TERM 2261 1821967 - 1821983 + G 73 -10.1 -2.56288 | opp_overlap 1821967 TACGTACCGAAAAAA GCAGCTG GTA CGGCTGC TGGCTTAACTGGTTT glpT 1820806 - 1822161 + | glycerol-3-phosphate transporter TERM 2262 1822216 - 1822167 - T 73 -9.5 -2.52988 | opp_overlap 1822172, overlap 1822172 AACAGTATAATACAT GAAAAGAAGCGGTACGTCT TCACATTAAAAG TGACGTACCGCTTCTTTTT CGTTTAAAATTCTTC TERM 2263 1822211 - 1822172 - T 100 -9.4 -4.44819 | opp_overlap 1822172, overlap 1822167 TATAATACATGAAAA GAAGCGGTACGTCT TCACATTAAAAG TGACGTACCGCTTC TTTTTCGTTTAAAAT TERM 2264 1822172 - 1822211 + T 100 -10.1 -4.99134 | opp_overlap 1822172 1822167 TATAATACATGAAAA GAAGCGGTACGTCTT CACATTAAAA GTGACGTACCGCTTC TTTTTCGTTTAAAAT Sca_1821 1822741 - 1822220 - | hypothetical protein Sca_1822 1824306 - 1822900 - | putative transport protein TERM 2265 1824278 - 1824249 - G 100 -13.1 -5.38054 | opp_overlap 1824247 TTTGATAAATAAAAA GTCCTTTTTTCTC GGCT AAGAAAAAAGGAC AAATATTTAATATCT Sca_1823 1825088 - 1824477 - | hypothetical protein TERM 2266 1825211 - 1825230 + r 81 -9.2 -3.64466 | opp_overlap 1825211 GACTGAAATCATAAA CCCCCGAC TCAT GTCGAGGG TTGTATATCTCAAAT TERM 2267 1825230 - 1825211 - R 100 -11.4 -4.14725 | opp_overlap 1825211 GACTGAAATCATAAA CCCCCGAC TCAT GTCGAGGG TTGTATATCTCAAAT Sca_1824 1826150 - 1825269 - | putative short chain dehydrogenase TERM 2268 1825687 - 1825673 - G 73 -7.2 -4.14615 | opp_overlap 1825671 1825673 AGAAAATAGGATAAA CATTTG TTT CAAATG TGTTTGTAAAGTCTT Sca_1825 1827335 - 1826220 - | putative amino acid amidohydrolase Sca_1826 1828506 - 1827313 - | putative sulfate permease TERM 2269 1828600 - 1828635 + r 78 -10.5 -2.83004 | opp_overlap 1828600, overlap 1828597 1828602 ACCACAACAAAAAAA GAGCTGCAATACTTG TAATTT CAAGTACCGCAGCTC TCGTTAAATTTACTT TERM 2270 1828635 - 1828600 - R 100 -14.9 -5.89921 | opp_overlap 1828600 1828597 1828602 ACCACAACAAAAAAA GAGCTGCAATACTTG TAATTT CAAGTACCGCAGCTC TCGTTAAATTTACTT hutI 1829918 - 1828656 - | imidazolonepropionase hutU 1831599 - 1829911 - | urocanate hydratase Sca_1829 1832988 - 1831630 - | hypothetical protein TERM 2271 1831706 - 1831718 + g 73 -6.3 -4.36931 | opp_overlap 1831706 1831705 CAGATAAACACTAAT TTCCA TAC TGGAA TTTTAATATCCGTTG Sca_1830 1833560 - 1834438 + | putative transcriptional regulator Sca_1831 1835462 - 1834533 - | formiminoglutamase TERM 2272 1835751 - 1835738 - H 79 -5.2 -5.23292 | opp_overlap 1835738 TTATATAAAACAAAA CCGC GATGAA GCGG TTTGACTATTAATTA TERM 2273 1836831 - 1836793 - g 72 -7.5 -3.75898 | opp_overlap 1836796 AAGAAAGTACTGAAA CTTCTGAAGAAGCAGAA GAACG TCCTACTTCTTCAGTTG TAAAAGACGTTAAAG Sca_1832 1835859 - 1836935 + | hypothetical protein TERM 2274 1836942 - 1836983 + T 100 -17.5 -4.51763 | opp_overlap 1836942 AGACGCTAACAAAAA GGCTGATGGATTCGTTGTA TTAT TACAGCGAACCTATCAGCC TTTCTTATATTATTC TERM 2275 1836983 - 1836942 - T 100 -15.3 -5.09204 | opp_overlap 1836942 AGACGCTAACAAAAA GGCTGATGGATTCGTTGTA TTAT TACAGCGAACCTATCAGCC TTTCTTATATTATTC rpi 1837676 - 1836993 - | ribose 5-phosphate isomerase A Sca_1834 1838719 - 1837700 - | putative aldose 1-epimerase Sca_1835 1839081 - 1838755 - | hypothetical protein TERM 2276 1839172 - 1839133 - R 100 -13.8 -3.96469 | gap 1, opp_overlap 1839133 ATATTTTAACAATAA GGCACACCTATGACTAGAT ACA ATCTAG-CAAAGATGTGCC TTTGATGAACATTTG TERM 2277 1839133 - 1839172 + r 95 -11.6 -3.75461 | gap 1, opp_overlap 1839133 ATATTTTAACAATAA GGCACACCTATGACTAGAT ACA ATCTAG-CAAAGATGTGCC TTTGATGAACATTTG Sca_1836 1840436 - 1839207 - | hypothetical protein Sca_1837 1841328 - 1840429 - | putative ABC transporter ATP-binding protein Sca_1838 1842161 - 1841451 - | hypothetical protein Sca_1839 1842384 - 1842178 - | putative transcriptional regulator TERM 2278 1842423 - 1842456 + r 95 -12.1 -3.39449 | gap 1, opp_overlap 1842445, overlap 1842422 1842417 ATACTATATTATCTT TGTCATTTTGAC-AAT CAT ATTAGTCAAAATGACA TTAATGTTAATCAAA TERM 2279 1842490 - 1842519 + r 81 -9.5 -3.67285 | opp_overlap 1842490 ACAAAAAACAAAAAA GACGATTTCTA ATTAAGTC TAGAAATCGTC TTTAAAATATCTTAT TERM 2280 1842519 - 1842490 - R 100 -10.2 -6.07374 | opp_overlap 1842490 ACAAAAAACAAAAAA GACGATTTCTAA TTAAGT CTAGAAATCGTC TTTAAAATATCTTAT Sca_1840 1843148 - 1842531 - | hypothetical protein Sca_1840a 1843678 - 1843196 - | hypothetical protein Sca_1841 1843932 - 1843663 - | hypothetical protein (fragment 2) Sca_1842 1844233 - 1843910 - | hypothetical protein (fragment 1) TERM 2281 1844151 - 1844167 + g 84 -10.1 -3.66654 | ATAAACCAATACTCA GGGCGTG TCG CACGTCC TTTAAAATTCACATA TERM 2282 1844217 - 1844205 - G 73 -6.3 -4.37734 | CAGAACAATTTAAAA GATTC ACC GAATC CCACTCTTTTCTCCA Sca_1843 1844528 - 1845148 + | putative 3-methyladenine DNA glycosylase TERM 2283 1845191 - 1845142 - T 70 -6.5 -4.14633 | opp_overlap 1845150, overlap 1845146 1845148 1845150 TACTTGGAAAAAACA CAAATAGACCGAAAGAGTTAGGA TTAA CCCCGACTCTTCCGGTTTTTTTA ATATTCTTTAATTAA TERM 2284 1845187 - 1845146 - T 70 -5.1 -4.64992 | opp_overlap 1845150, overlap 1845142 1845148 1845150 TGGAAAAAACACAAA TAGACCGAAAGAGTTAGGA TTAA CCCCGACTCTTCCGGTTTT TTTAATATTCTTTAA TERM 2285 1845185 - 1845148 - T 76 -7.7 -3.91191 | opp_overlap 1845150, overlap 1845146 1845142 1845150 GAAAAAACACAAATA GACCGAAAGAGTTAGGA TTAA CCCCGACTCTTCCGGTT TTTTTAATATTCTTT TERM 2286 1845150 - 1845183 + T 90 -7.4 -5.6473 | opp_overlap 1845148 1845146 1845142 1845150 AAAAACACAAATAGA CCGAAAGAGTTAGG ATTAAC CCCGACTCTTCCGG TTTTTTTAATATTCT TERM 2287 1845183 - 1845150 - T 83 -10.3 -3.49387 | opp_overlap 1845150, overlap 1845148 1845146 1845142 AAAAACACAAATAGA CCGAAAGAGTTAGGA TTAA CCCCGACTCTTCCGG TTTTTTTAATATTCT nrdG 1845718 - 1845248 - | putative anaerobic ribonucleotide reductase activating protein nrdD 1847571 - 1845718 - | anaerobic ribonucleoside-triphosphate reductase Sca_1846 1848203 - 1847760 - | hypothetical protein TERM 2288 1848529 - 1848563 + r 100 -10.2 -5.76237 | opp_overlap 1848529 AAATTGCTACAAAAA GAAGCCGTTCAA CCTTCTACCAA TTGAACGGCTTC TTTTTTATTTATCTA TERM 2289 1848563 - 1848529 - R 100 -11.6 -4.86033 | opp_overlap 1848529 AAATTGCTACAAAAA GAAGCCGTTCAACC TTCTACC AATTGAACGGCTTC TTTTTTATTTATCTA fni 1849710 - 1848568 - | putative isopentenyl diphosphate isomerase TERM 2290 1849549 - 1849562 + g 78 -6.7 -4.68994 | CAGCTGAGGGTCATT TTGCG CCAT CGCAA TTTTTACATGATCAT Sca_1848 1850654 - 1849707 - | hypothetical protein Sca_1849 1850765 - 1851247 + | hypothetical protein Sca_1850 1851244 - 1851684 + | hypothetical protein Sca_1851 1851730 - 1852368 + | hypothetical protein TERM 2291 1852384 - 1852421 + T 100 -13.8 -5.02439 | gap 1, opp_overlap 1852384 ATGATATTAAAAAAA GCAGTGAAACAAATCTA GTCGA TAGATT-GTTTCACTGC TTTTTCTCATTCTAT TERM 2292 1852421 - 1852384 - T 100 -13.8 -5.59357 | gap 1, opp_overlap 1852384 ATGATATTAAAAAAA GCAGTGAAACAAATCTA GTCGA TAGATT-GTTTCACTGC TTTTTCTCATTCTAT TERM 2293 1852503 - 1852479 - T 100 -12.9 -5.65927 | opp_overlap 1852482 CATTGAAATAAAAAA CGACAGTGCCG CTA CAACACTGTCG TTCACCCCATAATAT Sca_1852 1854444 - 1852528 - | putative transport protein TERM 2294 1854161 - 1854189 + g 70 -5.4 -4.4267 | overlap 1854164 TCTGAGCCTGTTTCG CGGTTATCAGAA TCATT TTCTGATAATGG TTTTAAGTTTTCGAC Sca_1853 1855104 - 1854457 - | hypothetical protein TERM 2295 1855519 - 1855529 + G 88 -5.4 -5.56568 | TTTAAATATATCTAT CGTT ATC AACG TTTTTTTCATGCTGT Sca_1854 1855231 - 1855803 + | putative transcriptional regulator TERM 2296 1855790 - 1855820 + F 88 -7.7 -4.89521 | gap 1, opp_overlap 1855788 1855791, overlap 1855791 AATTAGAGGAAACTG ACCTGCCC-AAATA AAAC TATTTAGGGCAGGC TTTTCTTTACAATAT TERM 2297 1855819 - 1855791 - f 85 -11.2 -2.69869 | gap 1, opp_overlap 1855790 1855791, overlap 1855788 ATTAGAGGAAACTGA CCTGCCC-AAATA AAAC TATTTAGGGCAGG CTTTTCTTTACAATA TERM 2298 1855791 - 1855819 + F 93 -11.2 -3.52628 | gap 1, opp_overlap 1855791 1855788, overlap 1855790 ATTAGAGGAAACTGA CCTGCCC-AAATA AAAC TATTTAGGGCAGG CTTTTCTTTACAATA Sca_1855 1855935 - 1856096 + | hypothetical protein Sca_1856 1856102 - 1858435 + | hypothetical protein TERM 2299 1858498 - 1858448 - T 100 -12.9 -5.26907 | gap 1, opp_overlap 1858456, overlap 1858449 1858455 1858456 TAAGACAAAACAAAA TTAAAAAGGAGCGCTATAGCGAAA TGTA TGTCGCTATAGCGCT-CTTTCTAT TGTTTCATTTATTTT TERM 2300 1858497 - 1858449 - T 100 -16.4 -3.73704 | gap 1, opp_overlap 1858456, overlap 1858448 1858455 1858456 AAGACAAAACAAAAT TAAAAAGGAGCGCTATAGCGAAA TGTA TGTCGCTATAGCGCT-CTTTCTA TTGTTTCATTTATTT TERM 2301 1858492 - 1858455 - T 100 -15.7 -5.19819 | opp_overlap 1858456, overlap 1858449 1858448 1858456 AAACAAAATTAAAAA GGAGCGCTATAGCGAAA TGTA TGTCGCTATAGCGCTCT TTCTATTGTTTCATT TERM 2302 1858456 - 1858491 + T 100 -19.2 -4.41237 | opp_overlap 1858455 1858449 1858448 1858456 AACAAAATTAAAAAG GAGCGCTATAGCGAAA TGTA TGTCGCTATAGCGCTC TTTCTATTGTTTCAT TERM 2303 1858491 - 1858456 - T 100 -19.2 -3.68231 | opp_overlap 1858456, overlap 1858455 1858449 1858448 AACAAAATTAAAAAG GAGCGCTATAGCGAAA TGTA TGTCGCTATAGCGCTC TTTCTATTGTTTCAT tcaB 1859727 - 1858507 - | TcaB protein TERM 2304 1859685 - 1859703 + g 76 -6.8 -4.43213 | opp_overlap 1859685 CTAATATGATAACCA GAAAAACT GTC GGTTTTTC TTTTCCTATATTGGA TERM 2305 1859865 - 1859825 - R 81 -2.9 -5.80951 | gap 2 ATGCAAAATAAAAAA GAACGAAAC-A-AAAATCT AAAAA AGATTTCATAGTTTCGTCC TTAACATCACATTGA tcaA 1861278 - 1859920 - | TcaA protein TERM 2306 1861592 - 1861566 - R 88 -5.9 -5.59357 | opp_overlap 1861566 1861591 ACTATATTAAAAAAA CCGATGCAT CCCTCAAAT ATGCACCGG TAATCTATACCTTTA Sca_1859 1862071 - 1861610 - | putative transcriptional regulator TERM 2307 1862416 - 1862427 + G 78 -5.8 -4.87803 | GCATTTCCTTAGTAG GCAG TTTG CTGC TTTTATTTAAACATC Sca_1860 1862232 - 1863221 + | hypothetical protein TERM 2308 1863274 - 1863224 - T 100 -15.8 -4.63486 | gap 1, opp_overlap 1863227 ATTCGGCCAATAAAA CAAGCGTCCTATAAGCATTTCAC TTTTAT GTG-ACTGCTTATAGGACGCTTA TCTATTTAACTAAAG TERM 2309 1863227 - 1863271 + T 100 -15.3 -3.77303 | gap 1, opp_overlap 1863224 CGGCCAATAAAACAA GCGTCCTATAAGCATTTCAC TTTTAT GTG-ACTGCTTATAGGACGC TTATCTATTTAACTA Sca_1861 1863987 - 1863298 - | putative ABC transporter ATP-binding protein Sca_1862 1865045 - 1863987 - | hypothetical protein Sca_1863 1865210 - 1865884 + | hypothetical protein Sca_1864 1865877 - 1867256 + | hypothetical protein TERM 2310 1867258 - 1867302 + T 100 -15.4 -4.98255 | gap 1, opp_overlap 1867263, overlap 1867263 CAAAAAAATTATAGA AAAAAGCAGATGCAAACGATT TTTC AATCGTT-GCATCTGCTTTTC TTTTTATGATTGCAA TERM 2311 1867297 - 1867263 - T 100 -15.3 -5.43487 | gap 1, opp_overlap 1867258 1867263 AAATTATAGAAAAAA GCAGATGCAAACGATT TTTC AATCGTT-GCATCTGC TTTTCTTTTTATGAT TERM 2312 1867263 - 1867297 + T 100 -15.3 -5.3658 | gap 1, opp_overlap 1867263, overlap 1867258 AAATTATAGAAAAAA GCAGATGCAAACGATT TTTC AATCGTT-GCATCTGC TTTTCTTTTTATGAT mqo 1868781 - 1867306 - | malate dehydrogenase (acceptor) TERM 2313 1868907 - 1868876 - H 72 -4.6 -4.91109 | gap 1, overlap 1868884 TTTCTATTATAAAAA CTAACACACCTAAGA ACG TCTTTAGT-TGTTAG GTTACAACCACTTTG TERM 2314 1869739 - 1869722 - g 72 -7.7 -3.7626 | AGAAATACCCAAGAA GCCGCAA ATTA TTGCAGC CGGCCGCTTAGAATA Sca_1866 1869105 - 1870277 + | putative transferase TERM 2315 1870293 - 1870260 - T 100 -14.1 -3.7347 | opp_overlap 1870258 1870286, overlap 1870263 GCCAATAGTCAACAA GAATCCCAAATCAAC TGAA ATTGACTTGGGATTC CCATTACTTTAATTT TERM 2316 1870290 - 1870263 - T 90 -10 -3.98981 | opp_overlap 1870258 1870286, overlap 1870260 AATAGTCAACAAGAA TCCCAAATCAAC TGAA ATTGACTTGGGA TTCCCATTACTTTAA TERM 2317 1870332 - 1870367 + T 90 -7.7 -5.09426 | opp_overlap 1870332 ACATATTCATGGAAA TACCGTTATATGCAT ATCAAC AAGCATACAACGGTA TTTTTTAAAGTTAGA TERM 2318 1870367 - 1870332 - T 85 -10.6 -3.6806 | opp_overlap 1870332 ACATATTCATGGAAA TACCGTTATATGCATA TCAA CAAGCATACAACGGTA TTTTTTAAAGTTAGA Sca_1867 1871979 - 1870378 - | putative L-lactate permease lctP Sca_1868 1872381 - 1874102 + | hypothetical protein TERM 2319 1874144 - 1874117 - T 100 -14.3 -5.1848 | opp_overlap 1874117 AATCAATCTAAAAAA CTCGAGTGCAA TCTATT TTGCACTCGAG TTTTTATAGTTAATC TERM 2320 1874117 - 1874144 + T 100 -14.3 -4.99861 | opp_overlap 1874117 AATCAATCTAAAAAA CTCGAGTGCAA TCTATT TTGCACTCGAG TTTTTATAGTTAATC Sca_1869 1874964 - 1874164 - | hypothetical protein TERM 2321 1875830 - 1875810 - g 88 -4.7 -5.45726 | GAGACTTCAAAAAAA CCACTCG GTAAACG CGAATGG CAAGCTGTAATTGAT Sca_1870 1875183 - 1876178 + | hypothetical protein TERM 2322 1876189 - 1876216 + F 100 -10 -5.38047 | opp_overlap 1876189 ATTAATGAAGTATAA TACCATTTCTTC TTTT GAAGGGATGGTA TTTTTTCTATCGATA TERM 2323 1877709 - 1877684 - g 80 -10.5 -3.39948 | opp_overlap 1877691 TTAGAAGAAATTGAA GCAGAATTACG CGCA CGTACTTCTGC AACTTCAGCAAACTT Sca_1871 1876376 - 1877740 + | hypothetical protein TERM 2324 1877752 - 1877803 + T 100 -12.7 -3.77846 | opp_overlap 1877763, overlap 1877757 1877763 ATAAAATATCTAATC GATATTGAGAAGTGCTATTTTCA TTTTAT TGAAGATAGCACTTTTTATTATC TTTAACTCTCTTCTA TERM 2325 1877757 - 1877798 + T 95 -11.2 -3.85256 | opp_overlap 1877763, overlap 1877752 1877763 ATATCTAATCGATAT TGAGAAGTGCTATTTTCA TTTTAT TGAAGATAGCACTTTTTA TTATCTTTAACTCTC TERM 2326 1877792 - 1877763 - T 71 -8 -3.40071 | opp_overlap 1877757 1877752 1877763 AATCGATATTGAGAA GTGCTATTTTCA TTTTAT TGAAGATAGCAC TTTTTATTATCTTTA TERM 2327 1877763 - 1877792 + T 100 -10.2 -5.33331 | opp_overlap 1877763, overlap 1877757 1877752 AATCGATATTGAGAA GTGCTATTTTCA TTTTAT TGAAGATAGCAC TTTTTATTATCTTTA TERM 2328 1877854 - 1877828 - T 100 -10.2 -4.99043 | CTTCTATAAACAAAA CCCGCAGAAATA TAT CATTTCCACGGG CACTTTTAAAATTTC Sca_1872 1878908 - 1877871 - | hypothetical protein TERM 2329 1879049 - 1879024 - R 93 -5.5 -5.93252 | overlap 1879027 TTGAAAAATAAAAAA GCATATCACTA AAAT CAGTGATACAC TTTAAATCTTATTTT Sca_1873 1879489 - 1879058 - | hypothetical protein Sca_1874 1880017 - 1879583 - | putative transcriptional regulator Sca_1875 1880176 - 1881111 + | hypothetical protein TERM 2330 1881121 - 1881161 + T 100 -15.7 -4.90906 | opp_overlap 1881121, overlap 1881157 CTTTGAACTTAAAAA TATCGCATCACATTCACTT ATA AACAGAATGTGATGCGATA TTTTTAATATTGTCG TERM 2331 1881161 - 1881121 - T 100 -15.7 -4.74103 | opp_overlap 1881121 1881157 CTTTGAACTTAAAAA TATCGCATCACATTCACTT ATA AACAGAATGTGATGCGATA TTTTTAATATTGTCG Sca_1876 1881725 - 1881165 - | hypothetical protein TERM 2332 1881656 - 1881668 + g 81 -9.1 -4.09117 | CCATCCACTTGCCAA GCGAC ACT GTCGC TTCTTTATAAATAGG TERM 2333 1882140 - 1882126 - g 84 -4.2 -5.5112 | opp_overlap 1882125 TTCAGTAAGAAAAAA GTTGTG AAG CACGAC GATATTCCTCATGGC Sca_1877 1881853 - 1882203 + | hypothetical protein TERM 2334 1882224 - 1882247 + T 77 -4.5 -5.22039 | opp_overlap 1882224 TATGATTTTATTCAA GCTGGGACA TTTGAT TGCTCCAGC TTTTTTCAATTTAAA TERM 2335 1882292 - 1882265 - T 100 -12.1 -4.74103 | TTTTCAATTTAAAAA GGCACTAGTCA AAAATA CGACTAGTGCC TCATAGAATATAAAT gltT 1883643 - 1882366 - | putative proton/sodium-glutamate symport protein Sca_1879 1884403 - 1883825 - | hypothetical protein TERM 2336 1884913 - 1884882 - R 90 -9.6 -4.01381 | opp_overlap 1884882 1884902 ATTTAACGCAAAGAA GACACTAAACACTA TTTA TCGTGTTTAATGTC TTAATCACATTTATT Sca_1880 1885305 - 1884946 - | hypothetical protein TERM 2337 1885611 - 1885588 - H 76 -5.4 -5.13648 | opp_overlap 1885588 CAAATATAAATAAAA GAAACAATTA CATT TATTTGTTTC ATTCTTGACAATGGA TERM 2338 1885850 - 1885838 - g 70 -5.5 -4.49756 | opp_overlap 1885836 1885838 CGTTAAATATTAAAA CGCTA GAC CAGCG TGTGTTTTTAGATTC Sca_1881 1885669 - 1886106 + | hypothetical protein TERM 2339 1886644 - 1886622 - g 78 -9.2 -3.5936 | opp_overlap 1886621 GTTAAATTGCCTAAA CGTACTGAAG ATT CTTCAGTAAG CTCTAATATTTCTAT Sca_1882 1886259 - 1886666 + | hypothetical protein TERM 2340 1886704 - 1886741 + T 100 -10.8 -4.23853 | gap 2, opp_overlap 1886702 1886701 1886704 TAGCGGATAAAATCA GACCCTCTTGAACCTAGC ATTT GCTAG-T-CAAGGGGGTC TTTATATATCTTATT TERM 2341 1886741 - 1886704 - T 73 -8.6 -3.18044 | gap 2, opp_overlap 1886704, overlap 1886702 1886701 TAGCGGATAAAATCA GACCCTCTTGAACCTAGC ATTT GCTAG-T-CAAGGGGGTC TTTATATATCTTATT mvaA 1888026 - 1886752 - | putative hydroxymethylglutaryl-CoA reductase thiL 1889184 - 1888033 - | putative acetyl-CoA acetyltransferase mvaS 1889298 - 1890467 + | putative hydroxymethylglutaryl-CoA synthase TERM 2342 1890502 - 1890528 + F 100 -11.7 -5.12068 | opp_overlap 1890505 GCAAAGCTTTTTCAA GAAGTCTCGAA CTTGT TTCGAGGCTTC TTTTTATTACATATA Sca_1886 1890685 - 1891884 + | putative cell division protein TERM 2343 1891947 - 1891983 + T 89 -11.8 -2.81218 | gap 1, opp_overlap 1891947 1891948 1891950, overlap 1891947 1891950 CTGCTTAGAGTATAA CTATGGGCCATCAA-CA TTTC TGATTGATGGCCCATAC GTTTCCAATATTTAC TERM 2344 1891983 - 1891947 - T 95 -11.8 -3.46602 | gap 1, opp_overlap 1891947 1891947 1891950, overlap 1891948 1891950 CTGCTTAGAGTATAA CTATGGGCCATCAA-CA TTTC TGATTGATGGCCCATAC GTTTCCAATATTTAC TERM 2345 1891947 - 1891984 + T 93 -11.6 -3.695 | gap 2, opp_overlap 1891947 1891948 1891950, overlap 1891947 1891950 CTGCTTAGAGTATAA C-TATGGGCCATCAA-CA TTTC TGATTGATGGCCCATACG TTTCCAATATTTACA TERM 2346 1891982 - 1891948 - T 100 -15.3 -2.67747 | gap 1, opp_overlap 1891947 1891947 1891950, overlap 1891947 1891950 TGCTTAGAGTATAAC TATGGGCCATCAA-CA TTTC TGATTGATGGCCCATA CGTTTCCAATATTTA TERM 2347 1891980 - 1891950 - T 100 -13.5 -2.88069 | gap 1, opp_overlap 1891947 1891947 1891950, overlap 1891948 1891947 CTTAGAGTATAACTA TGGGCCATCAA-CA TTTC TGATTGATGGCCCA TACGTTTCCAATATT TERM 2348 1891950 - 1891980 + T 100 -13.5 -2.66098 | gap 1, opp_overlap 1891950 1891948 1891947, overlap 1891947 1891947 CTTAGAGTATAACTA TGGGCCATCAA-CA TTTC TGATTGATGGCCCA TACGTTTCCAATATT narT 1893188 - 1892022 - | nitrate transporter TERM 2349 1893466 - 1893443 - R 95 -7.5 -5.95946 | overlap 1893432 TCAACAATAAAAAAA GAACCTGTC TTTATC GACAGATTC CAAAAATTCATCAAA nreC 1894130 - 1893477 - | response regulator of the two-component regulatory nreB 1895191 - 1894148 - | NreB protein nreA 1895636 - 1895169 - | NreA protein narI 1896314 - 1895652 - | NarI protein narJ 1896903 - 1896328 - | NarJ protein TERM 2350 1896759 - 1896781 + g 86 -9.9 -4.0371 | gap 1, opp_overlap 1896754 GATCACGATACGCTA CCACCTCAGC GTAT GCTG-GGTGG TTTGTATCAAAAATA narH 1898449 - 1896896 - | nitrate reductase beta chain narG 1902137 - 1898463 - | respiratory nitrate reductase alpha chain TERM 2351 1899580 - 1899598 + g 76 -6 -4.68601 | GTCCAGTCTTTCACT TTGCCGTA AGG TGTGGCAA TTTCTTGTTTTGAAT TERM 2352 1901588 - 1901603 + g 76 -3.2 -5.35354 | overlap 1901590 GTGTAAAACCAGCGA TACGGT CAGG ACCGTC TTTTTTAATTGTGTA TERM 2353 1902400 - 1902423 + r 76 -9.6 -2.83634 | opp_overlap 1902405, overlap 1902405 TAAAAATACGCATAA AAAAACGGGC CTCA GCCCGTTTTA TACTTACTATGCTTT TERM 2354 1902405 - 1902418 + r 100 -9.5 -4.57209 | opp_overlap 1902405, overlap 1902400 ATACGCATAAAAAAA CGGGC CTCA GCCCG TTTTATACTTACTAT TERM 2355 1902418 - 1902405 - R 100 -9.5 -5.65177 | opp_overlap 1902400 1902405 ATACGCATAAAAAAA CGGGC CTCA GCCCG TTTTATACTTACTAT sirB 1903383 - 1902430 - | SirB protein nirD 1903688 - 1903374 - | NirD protein nirB 1906096 - 1903691 - | NirB TERM 2356 1905018 - 1905033 + g 91 -6.2 -5.61596 | GCCCCTACAACTCTT TCTTCT TTTA AGAAGA TTTTTTTGTAGACAT sirA 1906555 - 1906100 - | SirA nirR 1907278 - 1906556 - | NirR protein TERM 2357 1907394 - 1907356 - R 100 -11.9 -4.84017 | opp_overlap 1907357 1907363 AACTTTTTATAAAAA TAGGGAATCCCCTTA TCTCAATTC TGAGGGGATTCCCTA ACAAGTTTCAATTAT nirC 1908236 - 1907406 - | NirC protein TERM 2358 1908420 - 1908442 + r 95 -10.6 -4.28067 | opp_overlap 1908420 CTCAACAAAAAAAAA TGAAGCGACA ATC TGCCGCTTCA TTTCTCTATTATTAA TERM 2359 1908442 - 1908420 - R 100 -12.8 -6.36459 | opp_overlap 1908420 CTCAACAAAAAAAAA TGAAGCGACA ATC TGCCGCTTCA TTTCTCTATTATTAA Sca_1901 1908642 - 1908454 - | hypothetical protein TERM 2360 1908518 - 1908508 - G 70 -5.4 -4.48741 | opp_overlap 1908510, overlap 1908510 CAAGCCAGCAGAAAA GATG CCG CATC CTGCAATTGTACGCA Sca_1902 1909222 - 1908752 - | hypothetical protein TERM 2361 1909352 - 1909319 - R 100 -10.4 -6.01725 | opp_overlap 1909319 AATAAAAAGAAAAAA GACTGCAGCACAGT CTATAT ACTGCACTACAGTC CATTTATTAAAAATT Sca_1903 1909881 - 1909366 - | hypothetical protein Sca_1904 1910889 - 1910005 - | hypothetical protein Sca_1905 1912276 - 1910945 - | hypothetical protein TERM 2362 1912154 - 1912179 + g 78 -9.8 -3.2963 | gap 1, opp_overlap 1912154 TCTCCGTAAAATAAA CTGGCGCAGCA AAAAC TGCTG-GCCAG TTGTCAAACGATCAT TERM 2363 1912179 - 1912154 - G 95 -10.5 -4.64861 | gap 1, opp_overlap 1912154 TCTCCGTAAAATAAA CTGGCGCAGCAA AAA CTGCTG-GCCAG TTGTCAAACGATCAT Sca_1906 1913388 - 1912270 - | hypothetical protein TERM 2364 1913601 - 1913571 - R 86 -2.6 -6.09196 | TCTAAAATAAAAAAA GACCAACACAAT ATTTTTA AATGTGTCAGTC TTATCGTCTTTAAAC Sca_1907 1914220 - 1913621 - | hypothetical protein TERM 2365 1914421 - 1914393 - R 100 -11.2 -5.56263 | ATGACAAAATAAAAA CTCTCGACTTAT ATAGA ATAAATCGAGAG TTGGAATTTAAATTT Sca_1908 1915166 - 1914429 - | putative ABC transporter TERM 2366 1914586 - 1914574 - G 76 -7.7 -4.07687 | ACTTCTTTCGCAAAA CGCAT TTC ATGCG TGACAATAACCATTG Sca_1909 1915870 - 1915163 - | hypothetical protein Sca_1910 1916669 - 1915881 - | hypothetical protein TERM 2367 1916008 - 1916023 + g 74 -2.6 -5.31456 | overlap 1916010 TCTTTTTTAGTGAAA GTGAAA GCAG TTTTAC TTTTTTCTGCGTTAC TERM 2368 1916982 - 1916971 - g 73 -5.8 -4.4261 | GTCCTAATATCAAAA CACG TAAA CGTG CATTAAAAGTTATTA Sca_1911 1916916 - 1917026 + | hypothetical protein TERM 2369 1917245 - 1917283 + T 100 -12.6 -5.64274 | opp_overlap 1917249, overlap 1917249 TGGTCATTTGCAAAG AAAAGGATTCCGAGCC CATTCAT GGTTCGGAATCCTTTA TTTTTTTATAAATAA TERM 2370 1917279 - 1917249 - T 100 -11.2 -4.87803 | opp_overlap 1917245 1917249 CATTTGCAAAGAAAA GGATTCCGAGCC CATTCAT GGTTCGGAATCC TTTATTTTTTTATAA TERM 2371 1917249 - 1917279 + T 100 -13.4 -5.27709 | opp_overlap 1917249, overlap 1917245 CATTTGCAAAGAAAA GGATTCCGAGCC CATTCAT GGTTCGGAATCC TTTATTTTTTTATAA Sca_1912 1917975 - 1917289 - | putative phosphoglycerate mutase Sca_1913 1918258 - 1918626 + | hypothetical protein TERM 2372 1918686 - 1918663 - T 100 -9.6 -4.39287 | opp_overlap 1918663 TTAACGACACTAAAA CACTTGAGGC ATAC GTCTCAAGTG TTTTTTTATGTAAAA TERM 2373 1918663 - 1918686 + T 100 -11.8 -5.71712 | opp_overlap 1918663 TTAACGACACTAAAA CACTTGAGGC ATAC GTCTCAAGTG TTTTTTTATGTAAAA TERM 2374 1918732 - 1918704 - T 83 -6.8 -5.08824 | TTTTTATGTAAAAAA GGTATCAAAACA ACTTA TGTTCCGACACC CTTTTAAAACAGCTA Sca_1914 1919660 - 1918767 - | hypothetical protein TERM 2375 1919817 - 1919787 - R 90 -7.7 -5.1101 | opp_overlap 1919787 GTATCACCTAAAAAA TACTGCTAAGACC ATTTA AGTCTCAACAGTA TTTATTCATATCAAT Sca_1915 1920215 - 1919832 - | hypothetical protein Sca_1916 1920856 - 1922052 + | hypothetical protein TERM 2376 1922065 - 1922084 + F 100 -10.8 -5.40474 | opp_overlap 1922068 TAATTTTATTTTTAA CGACAAGA AGCT TCTTGTCG TTTTTTTAAACAAAT Sca_1917 1922165 - 1922782 + | hypothetical protein TERM 2377 1922791 - 1922816 + F 100 -10.5 -4.90381 | overlap 1922795 AAGTTGATTTTTTAA GAAACCGGCTC TTCT GAGTTGGTTTC TTTTATTATGTTCAC TERM 2378 1922795 - 1922812 + F 77 -5.5 -4.94168 | overlap 1922791 TGATTTTTTAAGAAA CCGGCTC TTCT GAGTTGG TTTCTTTTATTATGT TERM 2379 1922856 - 1922846 - f 78 -4 -5.45802 | CTTTCAAAATAAAAA TTAC ATA GTAA AATCGTGTTTATTTA Sca_1918 1923037 - 1924434 + | putative amino acid permease TERM 2380 1924450 - 1924438 - T 70 -4.1 -4.90917 | opp_overlap 1924445, overlap 1924445 AAAGCTAATTAAAAA CTTGA AAG CCAAG TGCACTCACATGAAA TERM 2381 1924476 - 1924445 - T 84 -9.5 -3.81062 | opp_overlap 1924445, overlap 1924438 ATTAAAAACTTGAAA GCCAAGTGCACTC ACATGA AAGTGTACTTGGC TTTTTTATTTTCAAT TERM 2382 1924445 - 1924476 + T 100 -11 -5.80951 | opp_overlap 1924438 1924445 ATTAAAAACTTGAAA GCCAAGTGCACT CACATGAA AGTGTACTTGGC TTTTTTATTTTCAAT Sca_1919 1925393 - 1924491 - | hypothetical protein TERM 2383 1925551 - 1925531 - R 95 -8.3 -5.54264 | opp_overlap 1925531 AAAGATGCAAAAAAA CGTCAATCC TAA AGACTGACG TTTTTTCTTACTTTT TERM 2384 1925531 - 1925551 + r 86 -5.4 -5.61689 | opp_overlap 1925531 AAAGATGCAAAAAAA CGTCAATC CTAAA GACTGACG TTTTTTCTTACTTTT Sca_1920 1927388 - 1925559 - | hypothetical protein TERM 2385 1926618 - 1926631 + g 73 -5.3 -4.61527 | TGCTAAAATACTTCC CATTG CAAT CAATG TTTTTACAGCGTTTT TERM 2386 1928515 - 1928505 - g 72 -8.2 -3.62096 | opp_overlap 1928506, overlap 1928506 CCGGATTATTTTAAA GGCG ACA CGCC TGCCGCTTACATGAT Sca_1921 1927689 - 1929260 + | hypothetical protein TERM 2387 1929324 - 1929266 - T 100 -10.7 -5.65177 | gap 1, opp_overlap 1929258 1929274 1929281, overlap 1929268 1929281 ATATGTATAAAAAAA TATTTTTATTTAAAAGAGAGCGTACACG GTTT CATGTACGCTCTCTTTTTAATCT-AATA AATCCATAAATAACA TERM 2388 1929323 - 1929268 - T 100 -11.4 -4.46105 | opp_overlap 1929258 1929274 1929281, overlap 1929266 1929281 ATGTATAAAAAAATA TTTTTATTTAAAAGAGAGCGTACACG GTTT CATGTACGCTCTCTTTTTAATCTAAT AAATCCATAAATAAC TERM 2389 1929274 - 1929317 + T 100 -17 -2.81133 | opp_overlap 1929268 1929266 1929281, overlap 1929281 AAAAAAATATTTTTA TTTAAAAGAGAGCGTACACG GTTT CATGTACGCTCTCTTTTTAA TCTAATAAATCCATA TERM 2390 1929310 - 1929281 - T 100 -17.3 -4.18494 | opp_overlap 1929274 1929281, overlap 1929268 1929266 TATTTTTATTTAAAA GAGAGCGTACACG GTTT CATGTACGCTCTC TTTTTAATCTAATAA TERM 2391 1929281 - 1929310 + T 100 -15.1 -4.82667 | opp_overlap 1929281 1929268 1929266, overlap 1929274 TATTTTTATTTAAAA GAGAGCGTACACG GTTT CATGTACGCTCTC TTTTTAATCTAATAA TERM 2392 1929606 - 1929548 - T 100 -12.8 -5.63103 | TTCTAACCAAAAAAA CGGAATAATCTTCGATGATACAATTT CCCTCAT AAACTGTACCATCAATGACCATTCCG TCTTTCAAGAATCAT Sca_1922 1931059 - 1929665 - | putative integral membrane efflux protein lytS 1931305 - 1933086 + | two-component sensor histidine kinase TERM 2393 1933286 - 1933276 - g 73 -3.2 -5.08086 | AGAAAAAATACAAAA GATG AAA CACC CGCCTTATATCATTT lytR 1933067 - 1933867 + | two-component response regulator lrgA 1934110 - 1934571 + | putative holin-like protein LrgA lrgB 1934568 - 1935269 + | putative holin-like protein LrgB TERM 2394 1935292 - 1935311 + F 90 -7.8 -5.1925 | opp_overlap 1935292 1935295, overlap 1935284 GACTTGATTGAAAAA GAGGCGGC AAAA GTCGCTTC TTTTTTGGCTTCTCA Sca_1927 1935560 - 1935919 + | hypothetical protein Sca_1928 1935938 - 1936300 + | hypothetical protein TERM 2395 1936288 - 1936275 - f 70 -3.9 -5.10077 | AAATAGTGGAAAAAA TTTCA CATA TGAAA CGAGGTCATTAATAT Sca_1929 1936302 - 1936853 + | putative transcriptional regulator TERM 2396 1936887 - 1936855 - T 81 -9.3 -3.62275 | opp_overlap 1936855, overlap 1936860 ACGGATCATTTTAAA GACAAGATGCATT TTTCATT AAAGCATCTTGTC TTTTTTTACACAAAA TERM 2397 1936855 - 1936887 + T 100 -9.3 -5.40072 | opp_overlap 1936855 1936860 ACGGATCATTTTAAA GACAAGATGCATT TTTCATT AAAGCATCTTGTC TTTTTTTACACAAAA TERM 2398 1936931 - 1936906 - T 100 -9.8 -5.71712 | opp_overlap 1936923 TTTTACACAAAAAAA CTGCCACGAA ATTTAA TTCGTGACAG CCATGATTTTATTGA Sca_1930 1937710 - 1936940 - | putative esterase opuCD 1938479 - 1937796 - | putative glycine betaine/carnitine/choline transport system permease protein opuCC 1939420 - 1938479 - | putative glycine betaine/carnitine/choline ABC transporter (osmoprotec) opuCC TERM 2399 1939203 - 1939225 + g 76 -4.2 -5.09259 | TGAATTGTACTTGAA CCCATATTAT TTA ATAATGTAGG TTTTATTTTGCCATG TERM 2400 1939275 - 1939263 - G 78 -9.1 -3.78775 | TGTTCTATTATCAAA CGCAC CAT GTGCG ACATAATTTGCGACT opuCB 1940074 - 1939439 - | putative glycine betaine/carnitine/choline transport system permease protein opuCA 1941327 - 1940074 - | putative glycine betaine/carnitine/choline ABC transporter (ATP-bindin) opuCA TERM 2401 1940497 - 1940484 - G 78 -5.3 -4.9218 | TATTGACTACAAAAA TCGTA TCAA TACGA TGACGACGCATAATA TERM 2402 1942046 - 1942057 + r 81 -7.2 -4.62783 | opp_overlap 1942046 CTTCAAACAAAAAAA CCGC CGAA GCGG TTTTTAAAATCAATC TERM 2403 1942057 - 1942046 - R 95 -7.2 -5.95539 | opp_overlap 1942046 CTTCAAACAAAAAAA CCGC CGAA GCGG TTTTTAAAATCAATC Sca_1935 1942663 - 1942067 - | hypothetical protein TERM 2404 1943107 - 1943085 - H 71 -7.8 -3.39664 | opp_overlap 1943090, overlap 1943083 1943082 1943090 AGTTAACAAAAATCA GAAAATTGTG TTT CACAATTTAC AGTTACAAAGAGCAG TERM 2405 1943102 - 1943090 - H 78 -6.3 -4.73912 | opp_overlap 1943090, overlap 1943085 1943083 1943082 ACAAAAATCAGAAAA TTGTG TTT CACAA TTTACAGTTACAAAG Sca_1936 1943170 - 1944828 + | putative amino acid transporter TERM 2406 1944840 - 1944865 + F 100 -9.1 -5.06414 | opp_overlap 1944840 ATAAGAAATAGTACA TAAGGCGGGAT TCCA ATCTCGTCTTA TTTTTATTGAAAAAA Sca_1937 1944934 - 1946298 + | putative para-nitrobenzyl esterase chain A TERM 2407 1946354 - 1946329 - T 100 -9.8 -5.83822 | opp_overlap 1946329 TAGACGTAAAAAAAA GCGCTCAATC TCTAAG GATTAAGCGC TTTTAGTATTCACAG TERM 2408 1946329 - 1946354 + T 85 -8.3 -4.4261 | opp_overlap 1946329 TAGACGTAAAAAAAA GCGCTCAATCT CTAA GGATTAAGCGC TTTTAGTATTCACAG Sca_1938 1947540 - 1946347 - | hypothetical protein TERM 2409 1946737 - 1946721 - G 73 -7.3 -4.07568 | TTGTCGCTGTTAAAA GCCAAGT TTT ACTTGAC CATTTATCAGCCAAG TERM 2410 1947708 - 1947660 - R 76 -5.4 -5.14985 | opp_overlap 1947660 1947658 1947674, overlap 1947669 TCAAACATAGAAAAA CTGGGAAAACGGGA-TGCAGAATA AAC TATCCTGCATTTCCGAAT-CCCAG TATTTTAATGTATTT TERM 2411 1947700 - 1947669 - R 77 -7.4 -4.20883 | gap 1, opp_overlap 1947660 1947658 1947674, overlap 1947660 GAAAAACTGGGAAAA CGGGA-TGCAGAATA AAC TATCCTGCATTTCCG AATCCCAGTATTTTA Sca_1939 1948495 - 1947722 - | hypothetical protein Sca_1940 1949163 - 1948492 - | putative ABC transporter ATP-binding protein Sca_1941 1950032 - 1949286 - | hypothetical protein TERM 2412 1950058 - 1950086 + r 90 -6.1 -5.50313 | opp_overlap 1950067 TCTTGATGTAAATTT CAATAATTATACC ATA GGTAATATTATTG TTTTTTAATTTTGTG TERM 2413 1950165 - 1950131 - R 71 -5.8 -4.47118 | opp_overlap 1950133, overlap 1950133 AATACCCAAAAACAA GACTGCTGACACCT CTAATTT AGATATCAGCAGTT ATTTTTTAATTAAGA TERM 2414 1950163 - 1950133 - R 77 -8.4 -3.82353 | opp_overlap 1950133, overlap 1950131 TACCCAAAAACAAGA CTGCTGACACCT CTAATTT AGATATCAGCAG TTATTTTTTAATTAA Sca_1942 1950956 - 1950171 - | hypothetical protein TERM 2415 1950491 - 1950479 - G 70 -3.3 -5.0065 | opp_overlap 1950480 1950483, overlap 1950480 TATCTATAAATAAAA CTGGC CAA GCCAT TGGATTATCAAACAT TERM 2416 1951139 - 1951106 - R 90 -6.1 -5.5943 | opp_overlap 1951101 1951098 1951106 AAACGATTAAAAAAA CTGCAGAATATCATT TTCC AATAATTTACTGCAG TTTTAATATTTTATT Sca_1943 1951617 - 1951153 - | hypothetical protein TERM 2417 1951514 - 1951535 + g 86 -8.1 -4.38637 | gap 1, overlap 1951517 GTAATAACTTCTGCT CCT-TGAAGG TCT CCTTCATAGG TTTTCGATTGTTCTT TERM 2418 1951784 - 1951797 + H 71 -6.7 -3.97834 | opp_overlap 1951784 1951783 GTCTATACAAATAAT GTGCA AACT TGCAC TTTGTGATAAAATTA ppx 1951894 - 1953492 + | putative exopolyphosphatase TERM 2419 1955441 - 1955428 - g 72 -8.1 -3.53091 | opp_overlap 1955421 ATCTGCTGCTTGAAA CCAGG TATT CCTGG CGTAAGTGAGAATAT ppk 1953706 - 1955880 + | polyphosphate kinase TERM 2420 1955903 - 1955928 + T 100 -11.2 -5.61881 | TTTAATGTTACTATT CACCGACTTG TTAAAT CAGGTCGGTG TTTTTATTTTTAAAC TERM 2421 1955979 - 1955950 - T 76 -7.9 -4.00532 | opp_overlap 1955950, overlap 1955953 TTTTTAAACATTAAA GAAGCTAACCCCA GATA TTAGGTCAGCTTC TTGTTTTTATATTCT argE 1957232 - 1956000 - | putative acetylornitine deacetylase Sca_1947 1958117 - 1957296 - | hypothetical protein TERM 2422 1958182 - 1958163 - R 100 -13.6 -5.89921 | ACTATAACAAAAAAA TCGGCAGC CGTA GCTGCCGA AAACTGAGTTTAAAC gntP 1959553 - 1958192 - | putative gluconate permease TERM 2423 1959641 - 1959622 - R 74 -5 -4.8543 | GAACTCCCATAAAAA CACCAGCT TTTT AACTGATG TTCTTATCTTTCAGA gntK 1961212 - 1959677 - | putative gluconokinase gntR 1961946 - 1961239 - | putative gluconate operon transcriptional repressor Sca_1951 1962050 - 1962646 + | hypothetical protein TERM 2424 1962708 - 1962651 - T 100 -11.5 -5.33921 | opp_overlap 1962654 1962658, overlap 1962658 AAAGCAATTAAAAAA GAAAAAACCACCGTATCAATATTAGAA TTAA TCCTTTAATTGATACGGTGGTTACTTC TATCAACTTGGCTGT TERM 2425 1962658 - 1962701 + T 73 -8.2 -3.49886 | opp_overlap 1962651 1962658, overlap 1962654 TTAAAAAAGAAAAAA CCACCGTATCAATATTAGAA TTAA TCCTTTAATTGATACGGTGG TTACTTCTATCAACT TERM 2426 1962701 - 1962658 - T 100 -10.4 -6.04324 | opp_overlap 1962658 1962654, overlap 1962651 TTAAAAAAGAAAAAA CCACCGTATCAATATTAGAA TTAA TCCTTTAATTGATACGGTGG TTACTTCTATCAACT Sca_1952 1963319 - 1962711 - | hypothetical protein TERM 2427 1963404 - 1963449 + r 73 -8.3 -3.38218 | opp_overlap 1963408, overlap 1963406 1963408 CTTTCAGCACAAATA AAAAGCACCCCGCTTCATTCT CTAT GGAATGAAACGAGGTGCTATA TTATAAGCTATTTAG TERM 2428 1963406 - 1963447 + r 87 -10.9 -3.25481 | opp_overlap 1963408, overlap 1963404 1963408 TTCAGCACAAATAAA AAGCACCCCGCTTCATTCT CTAT GGAATGAAACGAGGTGCTA TATTATAAGCTATTT TERM 2429 1963445 - 1963408 - R 100 -17.2 -5.40464 | opp_overlap 1963408 1963406 1963404 CAGCACAAATAAAAA GCACCCCGCTTCATTC TCTATG GAATGAAACGAGGTGC TATATTATAAGCTAT TERM 2430 1963408 - 1963445 + r 100 -13.5 -3.18386 | opp_overlap 1963408, overlap 1963406 1963404 CAGCACAAATAAAAA GCACCCCGCTTCATTCT CTAT GGAATGAAACGAGGTGC TATATTATAAGCTAT clpL 1965602 - 1963494 - | putative ATP-dependent Clp proteinase chain clpL TERM 2431 1964490 - 1964500 + g 70 -5.4 -4.4204 | AGCTTCGCCTTGACC GCTT TCT AAGC TTTCTTGTAATTCTT TERM 2432 1965234 - 1965249 + g 74 -4.7 -4.76311 | ACCAACACCAGCTTC CCCAA CTAAAA TTGGG TTGTTTTTATTTCTA TERM 2433 1966307 - 1966271 - R 89 -9 -4.61284 | gap 1, opp_overlap 1966282 1966300, overlap 1966300 AAGACCAAATTAAAA GAAGCCG-ACTATCATT GCAT AATGATAATTCAGCTTC TGATCGATTACTTAA Sca_1954 1967017 - 1966319 - | hypothetical protein TERM 2434 1967256 - 1967242 - H 77 -7.2 -4.31164 | TCTATACAATATAAA TCGTAA TTA TTACGA TTAACAAATGTGCAT Sca_1955 1967296 - 1968495 + | hypothetical protein TERM 2435 1968533 - 1968509 - T 95 -11.5 -3.83066 | opp_overlap 1968509, overlap 1968515 AATCATATTATTAAA GGAAAATGCTG TAT CGGCATTTTCC TTTTTTATTTTACAT TERM 2436 1968509 - 1968533 + T 100 -13.7 -5.80951 | opp_overlap 1968509 1968515 AATCATATTATTAAA GGAAAATGCTG TAT CGGCATTTTCC TTTTTTATTTTACAT TERM 2437 1968597 - 1968556 - T 100 -11 -5.03994 | opp_overlap 1968556 TTTTACATACAAAAA CCTCTTAAAGCGGCACTC CCATCT GAGTAACCCTTTAAGAGG TCAATTAAGATAAAT TERM 2438 1968556 - 1968597 + T 70 -8.8 -2.53995 | opp_overlap 1968556 TTTTACATACAAAAA CCTCTTAAAGCGGCACTC CCATCT GAGTAACCCTTTAAGAGG TCAATTAAGATAAAT Sca_1956 1969139 - 1968726 - | hypothetical protein Sca_1957 1971125 - 1969224 - | hypothetical protein TERM 2439 1969587 - 1969599 + g 70 -3.4 -5.00616 | CTTTGGTTCATGATG TGCA ATGTA TGCA TTTTTTGAAAACAGA TERM 2440 1970369 - 1970384 + g 93 -7.6 -5.13343 | CAAGTAAAATATCTG GAAGTG TTTT CACTTC TTTTGTTTTCAATTC TERM 2441 1971261 - 1971233 - R 73 -3.8 -5.27923 | opp_overlap 1971234 1971235, overlap 1971235 CAATTTCACAAAAAA GAGCAACTTCCT ACAAA AGGAAGCTGCAT ATTTGAAAGTTTTAA TERM 2442 1971235 - 1971259 + r 70 -8.6 -2.63783 | opp_overlap 1971233 1971235, overlap 1971234 ATTTCACAAAAAAGA GCAACTTCCT ACAAA AGGAAGCTGC ATATTTGAAAGTTTT TERM 2443 1971259 - 1971235 - R 100 -10.8 -4.26475 | opp_overlap 1971235 1971234, overlap 1971233 ATTTCACAAAAAAGA GCAACTTCCT ACAAA AGGAAGCTGC ATATTTGAAAGTTTT Sca_1958 1971975 - 1971277 - | putative alpha-acetolactate decarboxylase Sca_1959 1972401 - 1972099 - | hypothetical protein Sca_1960 1973822 - 1972548 - | putative glucarate transporter TERM 2444 1973596 - 1973606 + g 73 -5.4 -4.56775 | ATTGACAGCATTTTT TTCG GTC CGAA TTTTTCAGCAAGAAT TERM 2445 1973880 - 1973848 - H 100 -13.7 -4.15222 | opp_overlap 1973850 1973853, overlap 1973850 ACTTTCCTGAATAAA GATAACTTAGGTCAT CAT ATGACCTAAGTTATT TGAGTAAATATTACC TERM 2446 1973878 - 1973850 - H 100 -16.3 -3.6761 | opp_overlap 1973850 1973853, overlap 1973848 TTTCCTGAATAAAGA TAACTTAGGTCAT CAT ATGACCTAAGTTA TTTGAGTAAATATTA TERM 2447 1973850 - 1973878 + H 100 -16.3 -3.68506 | opp_overlap 1973850 1973848, overlap 1973853 TTTCCTGAATAAAGA TAACTTAGGTCAT CAT ATGACCTAAGTTA TTTGAGTAAATATTA TERM 2448 1973853 - 1973875 + H 100 -13.6 -3.9693 | opp_overlap 1973850 1973848, overlap 1973850 CCTGAATAAAGATAA CTTAGGTCAT CAT ATGACCTAAG TTATTTGAGTAAATA Sca_1961 1974348 - 1974968 + | putative alkaline phosphatase TERM 2449 1975015 - 1974977 - T 100 -11.8 -5.33921 | opp_overlap 1974977 AAACTAATTAAAAAA CGTATGGACATGCTCATT TAA AAACTGCATGTCCATACG TTTTTCTTTTAAAAG TERM 2450 1974977 - 1975015 + T 100 -11.8 -5.45802 | opp_overlap 1974977 AAACTAATTAAAAAA CGTATGGACATGCTCATT TAA AAACTGCATGTCCATACG TTTTTCTTTTAAAAG Sca_1962 1975683 - 1975024 - | hypothetical protein Sca_1963 1976528 - 1975680 - | putative ABC transporter ATP-binding protein TERM 2451 1977316 - 1977296 - g 77 -8.3 -3.93398 | opp_overlap 1977293 1977291 1977296 ATCGAGACACAACAA GCAGATGAT TTA ATCATCGGC ATGTCTTATACTATT fbp 1976756 - 1978708 + | putative fructose-bisphosphatase TERM 2452 1978725 - 1978760 + T 100 -9.8 -4.9792 | opp_overlap 1978726 1978728, overlap 1978728 CTTTAATCAATAACA AGAGGCAGATAAACCA TTTT TGGTCTATCTGCCTTA TTTTTATATAAAATC TERM 2453 1978759 - 1978726 - T 100 -13.3 -4.0342 | opp_overlap 1978725 1978728, overlap 1978728 TTTAATCAATAACAA GAGGCAGATAAACCA TTTT TGGTCTATCTGCCTT ATTTTTATATAAAAT TERM 2454 1978757 - 1978728 - T 100 -15.9 -3.60112 | opp_overlap 1978725 1978728, overlap 1978726 TAATCAATAACAAGA GGCAGATAAACCA TTTT TGGTCTATCTGCC TTATTTTTATATAAA TERM 2455 1978728 - 1978757 + T 100 -13.7 -4.58943 | opp_overlap 1978728 1978726, overlap 1978725 TAATCAATAACAAGA GGCAGATAAACCA TTTT TGGTCTATCTGCC TTATTTTTATATAAA lacH 1981778 - 1978764 - | beta-D-galactosidase lacR 1981871 - 1982716 + | lactose operon transcription regulator lacP 1984165 - 1982732 - | lactose permease TERM 2456 1982879 - 1982865 - G 71 -7.2 -3.84451 | CCTTTTAAATTGAAA GCTTTA TGA TAAAGC AAGCTGCAAATGATA TERM 2457 1983728 - 1983714 - G 73 -5.6 -4.54253 | opp_overlap 1983715, overlap 1983715 AAACTAGCAAAGAAA CGCGGT ACC ACCGCT ACTTCTTCACGTTCT TERM 2458 1983715 - 1983727 + g 70 -9.1 -2.94759 | opp_overlap 1983714 1983715 AACTAGCAAAGAAAC GCGGT ACC ACCGC TACTTCTTCACGTTC TERM 2459 1983727 - 1983715 - G 73 -9.1 -3.30925 | opp_overlap 1983715, overlap 1983714 AACTAGCAAAGAAAC GCGGT ACC ACCGC TACTTCTTCACGTTC TERM 2460 1984477 - 1984436 - R 100 -16.2 -5.69793 | ATAGCAAATAAAAAA GAGCGAAATTTAAACCCT TGATAT AAGGCTTAAATTTCGCTC AAATGCTGTATCTAT Sca_1969 1985407 - 1984514 - | putative glyoxylase family protein TERM 2461 1985448 - 1985427 - R 83 -10.3 -3.54307 | opp_overlap 1985427 AATATCCCCCTTAAA TTTATCTCG TTTT CGAGATAAA TTATGTCCTAGTTAA TERM 2462 1985427 - 1985448 + r 85 -10.3 -3.57731 | opp_overlap 1985427 AATATCCCCCTTAAA TTTATCTCG TTTT CGAGATAAA TTATGTCCTAGTTAA Sca_1970 1985909 - 1985469 - | putative transcription regulator MarR family TERM 2463 1986057 - 1986030 - R 100 -11.4 -5.10064 | opp_overlap 1986032 1986034 CTGAATACAGAAAAA CACACATGCTGC ATTT ACAACATGTGTG TTCAACCTTCAAATT Sca_1971 1987078 - 1986071 - | hypothetical protein TERM 2464 1986710 - 1986731 + g 73 -3.1 -5.07971 | ACTGATTCCTTTTGT TAAAGATAA TACG TCATCTTTA TTTTTAATTGTTTTC TERM 2465 1987307 - 1987281 - H 79 -5.2 -5.18726 | TTCTCAGAATAAAAA GACAAAAAAGTG TCA CAATTTATTGTC TACCCTTTTCTTTTA TERM 2466 1987441 - 1987424 - g 74 -7.7 -3.83568 | opp_overlap 1987424 GGAGATGCAGAAGAA CCGGATG CTAT CATCCAG TTTCGTAATGTAAAC Sca_1972 1987370 - 1987651 + | hypothetical protein TERM 2467 1987702 - 1987671 - T 100 -19 -4.80487 | opp_overlap 1987671 CATAAGTAAAACAAA CAGAGAGATCAGAT TCAC ATCTGATCTCTCTG TTTTTAATTTTGTCC TERM 2468 1987671 - 1987702 + T 100 -19 -5.1417 | opp_overlap 1987671 CATAAGTAAAACAAA CAGAGAGATCAGAT TCAC ATCTGATCTCTCTG TTTTTAATTTTGTCC Sca_1973 1989493 - 1987706 - | putative ABC transporter, ATP-binding/permease protein Sca_1974 1991273 - 1989477 - | ABC transporter, ATP-binding/permease protein ddh 1992320 - 1991325 - | D-specific D-2-hydroxyacid dehydrogenase Sca_1976 1993184 - 1992513 - | putative NAD(P)H-flavin oxidoreductase TERM 2469 1993082 - 1993104 + g 76 -9.2 -3.3344 | opp_overlap 1993086, overlap 1993086 CTTCTAATATTGTTT GAAAGTCAGC ATC GCTTACTTTC TTATCAGGGTTGAAT Sca_1977 1993807 - 1993274 - | putative NADPH oxidoreductase TERM 2470 1993725 - 1993737 + g 74 -2.7 -5.41746 | GTCACAAGTTCAAAA CGATT TTC AATTG TTTTTTTCCACGATT TERM 2471 1993835 - 1993872 + r 70 -5.7 -4.24397 | opp_overlap 1993836 1993841, overlap 1993836 1993841 CTTTCTTTTGGCAAA ATAAAATGAGATTGCTT CCCC AAGCTATCTCATTTAAA TTTATATTCAGTTAT TERM 2472 1993871 - 1993836 - R 88 -9.2 -4.07568 | opp_overlap 1993835 1993836 1993841, overlap 1993841 TTTCTTTTGGCAAAA TAAAATGAGATTGCTT CCCC AAGCTATCTCATTTAA ATTTATATTCAGTTA TERM 2473 1993836 - 1993871 + r 76 -9.2 -3.13553 | opp_overlap 1993836 1993841, overlap 1993835 1993841 TTTCTTTTGGCAAAA TAAAATGAGATTGCTT CCCC AAGCTATCTCATTTAA ATTTATATTCAGTTA TERM 2474 1993866 - 1993841 - R 100 -9.1 -5.07652 | opp_overlap 1993836 1993835 1993841, overlap 1993836 TTTGGCAAAATAAAA TGAGATTGCTT CCCC AAGCTATCTCA TTTAAATTTATATTC TERM 2475 1993841 - 1993866 + r 86 -9.1 -3.93009 | opp_overlap 1993841 1993836, overlap 1993836 1993835 TTTGGCAAAATAAAA TGAGATTGCTT CCCC AAGCTATCTCA TTTAAATTTATATTC Sca_1978 1994060 - 1993884 - | hypothetical protein TERM 2476 1994200 - 1994179 - R 100 -9.5 -5.79588 | opp_overlap 1994179 TGAAAACGAAAAAAA CACACAGTC ATAT AACTGTGTG TTTAAAGATTAATTC TERM 2477 1994179 - 1994200 + r 77 -8.8 -3.62478 | opp_overlap 1994179 TGAAAACGAAAAAAA CACACAGT CATATA ACTGTGTG TTTAAAGATTAATTC Sca_1979 1995127 - 1994237 - | putative L-serine dehydratase Sca_1980 1995818 - 1995141 - | putative L-serine dehydratase beta chain Sca_1981 1996618 - 1995866 - | truncated protein, similar to FruA,Phosphotransferase system, fructose-specific IIC component (fragment 2) Sca_1982 1996906 - 1996772 - | truncated protein, similar to FruA,Phosphotransferase system, fructose-specific IIC component (fragment 1) TERM 2478 1997702 - 1997691 - g 86 -4.4 -5.64006 | opp_overlap 1997691 AGTTAAGTAAAAAAA GAAG CTTA CTTC ATATTTCTACAATCG TERM 2479 1997853 - 1997834 - g 70 -2.9 -5.08601 | GCATCTCAAGAAAAA GTTGAAA ATAAAA TCTCAAC AAATACAACTCACGT Sca_1983 1997666 - 1998223 + | hypothetical protein ccpA 1999371 - 1998355 - | putative catabolite control protein A TERM 2480 1999212 - 1999232 + g 79 -8.3 -4.02022 | opp_overlap 1999230, overlap 1999213 AAGACTGAATGTATC GGCTTGGTT CAT AACCAAGCA TTTCTAATGCTTCAA TERM 2481 1999213 - 1999231 + g 83 -11.8 -3.00731 | opp_overlap 1999230, overlap 1999212 AGACTGAATGTATCG GCTTGGTT CAT AACCAAGC ATTTCTAATGCTTCA Sca_1985 2000206 - 1999442 - | hypothetical protein Sca_1986 2000509 - 2001489 + | putative nickel transport protein TERM 2482 2001538 - 2001496 - T 100 -13.7 -4.49389 | gap 1, opp_overlap 2001501, overlap 2001501 AGTTCATAATTAAAA TAAAACTGGGGTA-CCCACT AAAA AGTGAGATACCCCAGTTTTT TAAAAGACTAATTGT TERM 2483 2001533 - 2001501 - T 100 -13.6 -5.19998 | gap 1, opp_overlap 2001501, overlap 2001496 ATAATTAAAATAAAA CTGGGGTA-CCCACT AAAA AGTGAGATACCCCAG TTTTTTAAAAGACTA TERM 2484 2001501 - 2001533 + T 100 -11.4 -5.0133 | gap 1, opp_overlap 2001496 2001501 ATAATTAAAATAAAA CTGGGGTA-CCCACT AAAA AGTGAGATACCCCAG TTTTTTAAAAGACTA alzD 2001864 - 2001538 - | putative branched-chain amino acid transport protein TERM 2485 2001738 - 2001764 + g 100 -8.9 -4.77047 | opp_overlap 2001737 2001740 CAGCAGGCAGTACAG CACCTAAATAT TGTAT ATATTTGGGTG TTTCTTTATCTTTTG Sca_1988 2002744 - 2001866 - | hypothetical protein TERM 2486 2002638 - 2002611 - G 81 -7.2 -4.65895 | gap 1 TCTGCTATGTAAAAA GACCTTCGAACAT TCA AT-TTCGAAGATC CTATCATTTCTATAT Sca_1989 2003697 - 2003143 - | hypothetical protein Sca_1990 2003821 - 2004570 + | hypothetical protein TERM 2487 2004576 - 2004622 + T 100 -12.4 -3.12999 | opp_overlap 2004577 2004579 2004610 AAAGCAATAAAAAAA ATAGAGCCGCTGGTTATGAT TGGGATT GTCATAACCAGCGGCTCCGC TTGGGTATAGGATAG TERM 2488 2004621 - 2004577 - T 100 -15.2 -6.15536 | opp_overlap 2004576, overlap 2004579 2004610 AAGCAATAAAAAAAA TAGAGCCGCTGGTTATGA TTGGGATTG TCATAACCAGCGGCTCCG CTTGGGTATAGGATA TERM 2489 2004619 - 2004579 - T 100 -20 -4.69435 | opp_overlap 2004576, overlap 2004577 2004610 GCAATAAAAAAAATA GAGCCGCTGGTTATGA TTGGGATTG TCATAACCAGCGGCTC CGCTTGGGTATAGGA Sca_1991 2006404 - 2004662 - | putative pyruvate oxidase TERM 2490 2005665 - 2005683 + g 71 -4.6 -4.72272 | overlap 2005668 CCTAAATTATACGGA TGATCATC TGG GATGATTG TTTTTGCTGGCAACG TERM 2491 2005668 - 2005680 + g 73 -6.3 -4.47707 | overlap 2005665 AAATTATACGGATGA TCATC TGG GATGA TTGTTTTTGCTGGCA Sca_1992 2007202 - 2006516 - | hypothetical protein Sca_1993 2007585 - 2007199 - | hypothetical protein TERM 2492 2007748 - 2007758 + r 78 -4 -5.36441 | opp_overlap 2007748 TATCGATTTTAGATA GTAA CTA TTAC TTTTTTCTATGAAAG TERM 2493 2007881 - 2007858 - R 85 -4.6 -5.51046 | gap 1, opp_overlap 2007858 TAAACATACAAAAAA CTGGAACAATC TTA GAA-GTTCCAG CTTTTTAACATTATT Sca_1994 2008779 - 2007892 - | putative LysR family regulatory protein TERM 2494 2008874 - 2008901 + r 84 -9.3 -3.77491 | gap 1, opp_overlap 2008869 2008874, overlap 2008870 CAAGCTAAAATTAAA GTTGGGACA-GT ATTCA ACATGTCCCAAC TTCCTTTATTTGATA TERM 2495 2008901 - 2008874 - R 89 -9.3 -4.23528 | gap 1, opp_overlap 2008874 2008870, overlap 2008869 CAAGCTAAAATTAAA GTTGGGACA-GT ATTCA ACATGTCCCAAC TTCCTTTATTTGATA Sca_1995 2010082 - 2008907 - | putative permease protein TERM 2496 2009143 - 2009187 + g 76 -7.9 -4.15788 | opp_overlap 2009173 CAACTAAAAATTGGA TCTCTATATCTCGTGCTTTAG CAC CAAAAGCACGACGTATCGCGA TTTCTTCAGAACGTT Sca_1996 2010759 - 2010079 - | putative ABC transporter ATP-binding protein TERM 2497 2010536 - 2010556 + g 84 -7.7 -4.66833 | overlap 2010537 ATTTCAGCTAATTGG TTATCAGAA CTT TTCTGATAG TTTTTACCATTAAAC TERM 2498 2010537 - 2010555 + g 73 -9 -3.39618 | overlap 2010536 TTTCAGCTAATTGGT TATCAGAA CTT TTCTGATA GTTTTTACCATTAAA Sca_1997 2011853 - 2010756 - | hypothetical protein TERM 2499 2012031 - 2012007 - H 83 -8.9 -4.1552 | CACCTCGTCAATAAA TTTTAAAATTA TTA TAATTTTAAAA CAATGGTTCTAATTC Sca_1998 2012099 - 2012581 + | hypothetical protein TERM 2500 2012722 - 2012748 + F 100 -11.7 -5.58454 | opp_overlap 2012722 TTAAAAACCAAAAAA TCAGAACTGCG TATGT TGCAGTTCTGA TTTTTTTACTATCAA TERM 2501 2012748 - 2012722 - f 100 -11 -5.54079 | opp_overlap 2012722 TTAAAAACCAAAAAA TCAGAACTGC GTATGTT GCAGTTCTGA TTTTTTTACTATCAA Sca_1999 2012817 - 2013638 + | hypothetical protein TERM 2502 2013636 - 2013677 + T 100 -17.7 -3.94634 | opp_overlap 2013636 2013640 2013644, overlap 2013640 2013644 AAAGATACGCTCAAA TAAAGAAAGTGGGTTCA CGTCAAAA TGAACCCACTTTCTTTA TTCTTTAAAATCGTC TERM 2503 2013677 - 2013636 - T 100 -18.4 -3.6135 | opp_overlap 2013636 2013640 2013644, overlap 2013640 2013644 AAAGATACGCTCAAA TAAAGAAAGTGGGTTCAC GTCAAA ATGAACCCACTTTCTTTA TTCTTTAAAATCGTC TERM 2504 2013673 - 2013640 - T 100 -14.8 -4.43208 | opp_overlap 2013636 2013640 2013644, overlap 2013636 2013644 ATACGCTCAAATAAA GAAAGTGGGTTCAC GTCAAA ATGAACCCACTTTC TTTATTCTTTAAAAT TERM 2505 2013640 - 2013673 + T 100 -14.1 -4.57581 | opp_overlap 2013640 2013636 2013644, overlap 2013636 2013644 ATACGCTCAAATAAA GAAAGTGGGTTCA CGTCAAAA TGAACCCACTTTC TTTATTCTTTAAAAT TERM 2506 2013669 - 2013644 - T 100 -9.8 -4.78326 | opp_overlap 2013640 2013636 2013644, overlap 2013640 2013636 GCTCAAATAAAGAAA GTGGGTTCAC GTCAAA ATGAACCCAC TTTCTTTATTCTTTA TERM 2507 2013644 - 2013669 + T 100 -9.1 -4.82212 | opp_overlap 2013644 2013640 2013636, overlap 2013640 2013636 GCTCAAATAAAGAAA GTGGGTTCA CGTCAAAA TGAACCCAC TTTCTTTATTCTTTA adaB 2014187 - 2013675 - | putative methylated DNA-protein cysteine methyltransferase TERM 2508 2014304 - 2014277 - R 100 -12.8 -4.75372 | opp_overlap 2014279 AGTATGGATGAAAAA GAAGCACACCTC AAAT GAGATGTGCCTC TTAAGGTCAATTATT Sca_2001 2014505 - 2014323 - | hypothetical protein bioB 2014633 - 2015643 + | putative biotin synthase TERM 2509 2015682 - 2015655 - T 81 -8.5 -4.31329 | opp_overlap 2015655 CTAAAAATTTTAAAA CCGCTTAGC ACCTATATCG GCTAAGCGG TTTTTCTTATGCTAC TERM 2510 2015655 - 2015682 + T 93 -8.5 -5.22006 | opp_overlap 2015655 CTAAAAATTTTAAAA CCGCTTAGC ACCTATATCG GCTAAGCGG TTTTTCTTATGCTAC srtA 2016297 - 2015689 - | sortase protein Sca_2004 2016447 - 2016713 + | hypothetical protein TERM 2511 2016702 - 2016756 + T 100 -9.8 -5.73978 | gap 1, opp_overlap 2016702 ATTCAACATAATGAA GCAAAACAGTAATTCAATTCATT CCTTTCAACC AAAGA-TTGAATTACTGTTTTGC TTTTTTATTTGTCAT TERM 2512 2016756 - 2016702 - T 83 -9.8 -3.54784 | gap 1, opp_overlap 2016702 ATTCAACATAATGAA GCAAAACAGTAATTCAATTCATT CCTTTCAACC AAAGA-TTGAATTACTGTTTTGC TTTTTTATTTGTCAT Sca_2005 2017060 - 2016761 - | hypothetical protein Sca_2006 2017270 - 2017896 + | putative phosphodiesterase TERM 2513 2017912 - 2017939 + T 100 -12 -5.55664 | opp_overlap 2017912 TGATTAACCCAAAAA TCCGACGTGCTA TTTA TGGCACGCCGGA TTTTTTTAATGCTCA TERM 2514 2017939 - 2017912 - T 100 -12 -4.7629 | opp_overlap 2017912 TGATTAACCCAAAAA TCCGACGTGCTA TTTA TGGCACGCCGGA TTTTTTTAATGCTCA Sca_2007 2018895 - 2017945 - | putative cation efflux system protein Sca_2008 2020414 - 2018984 - | hypothetical protein TERM 2515 2020549 - 2020532 - R 100 -7.7 -5.66684 | opp_overlap 2020532 CAACTCATAAAAAAA CTTCCGC CGCA ACGGAAG TTCTAACTTAATAAC Sca_2009 2021441 - 2020572 - | hypothetical protein TERM 2516 2021849 - 2021875 + G 74 -9.4 -3.09516 | GGCTTGACCGGTGCT GCTATTGGCGGT GCA ATCGCCTATGGC TTGGGTGCTCAACCA Sca_2010 2021669 - 2022691 + | hypothetical protein TERM 2517 2022723 - 2022707 - T 84 -8.7 -4.24294 | opp_overlap 2022707 ATTAATCATTCAAAA CAGACCA AAT CGGTCTG TTTTTCTATGTACGA TERM 2518 2022707 - 2022723 + T 90 -8 -5.03994 | opp_overlap 2022707 ATTAATCATTCAAAA CAGACC AAATC GGTCTG TTTTTCTATGTACGA TERM 2519 2022743 - 2022767 + T 72 -6.3 -4.24002 | opp_overlap 2022743 TCTATGTACGAAAAA CCCCCAAACTT TAA GAGCCTGGGGG TTTTCAACTTTCAAG TERM 2520 2022767 - 2022743 - T 100 -10 -4.7497 | opp_overlap 2022743 TCTATGTACGAAAAA CCCCCAAACT TTAAG AGCCTGGGGG TTTTCAACTTTCAAG drm 2023994 - 2022804 - | putative phosphopentomutase pdp 2025334 - 2024033 - | putative pyrimidine nucleoside phosphorylase TERM 2521 2024749 - 2024769 + g 75 -5.3 -4.73613 | opp_overlap 2024749 TTACATCTAAAACAA TCGCATCTG CTC CTGCTGCGA TTTTCTTACTCATAA TERM 2522 2025234 - 2025244 + g 73 -5.4 -4.68545 | GACATTTGATAATCC GGAA TAT TTCC TTTTGTATATTCCGT Sca_2013 2025595 - 2026599 + | putative alcohol dehydrogenase, zinc-containing Sca_2014 2027101 - 2026700 - | hypothetical protein Sca_2015 2027820 - 2027224 - | putative SAM-dependent methyltransferase TERM 2523 2027893 - 2027864 - R 100 -15.9 -4.68103 | TCAATCTTAACAAAA CAGACGCCTGAAT GTAG ATTCAAGCGTCTG CCGGGAAATGGATGA pflA 2028666 - 2027911 - | formate acetyltransferase activating enzyme TERM 2524 2028453 - 2028413 - G 76 -4.9 -5.00884 | gap 3, overlap 2028426 AGCTGTTCTAAAAAA GGCATT--TG-AAGCAGCGG TTCT CCGCCGCTTACAGTAACGCC TCCCCCAGAAGTGCT pflB 2030980 - 2028731 - | formate acetyltransferase TERM 2525 2031216 - 2031185 - R 84 -6.6 -5.31456 | overlap 2031188 CTAATTCACAAAAAA TAAGCTAGATGCCT GTAA AGACACCCAGCTTC TAAAATTTGTTTATT TERM 2526 2031213 - 2031188 - R 87 -8.3 -4.73105 | overlap 2031185 ATTCACAAAAAATAA GCTAGATGCCT GTAA AGACACCCAGC TTCTAAAATTTGTTT Sca_2018 2031622 - 2031251 - | hypothetical protein TERM 2527 2032108 - 2032075 - R 72 -8.3 -3.35467 | opp_overlap 2032102, overlap 2032078 CTTAGAAATCATCAA GAAGCAGAAATAC TGTGGTAG GAATTTCTGCTTC GCAGTACTTCATCAA TERM 2528 2032659 - 2032612 - R 76 -5.2 -5.14985 | gap 1, overlap 2032620 TTAAATATACAAAAA GAATCAAAGTAATGAATACCT CCCCTTT AGGT-TTCATTACTGTAACTC CTTAAAAATTGATAT TERM 2529 2032686 - 2032713 + r 100 -12.9 -5.57396 | opp_overlap 2032684 2032683 ATATTGTTAAAATGT GAGAGAAGGTT CCCCCA AACCTTCTCTC TTTTTTGTTGCTTAT Sca_2019 2033174 - 2032725 - | hypothetical protein Sca_2020 2033626 - 2033183 - | hypothetical protein TERM 2530 2033760 - 2033788 + r 84 -9.5 -3.76393 | opp_overlap 2033760 GTGTTCAGTAAAAAA GCAGCACGCCTTT TTT AGTGGCGTACTGC TTTCACTTCACCTAT TERM 2531 2033788 - 2033760 - R 100 -9.6 -5.14563 | opp_overlap 2033760 GTGTTCAGTAAAAAA GCAGCACGCC TTTTTTAGT GGCGTACTGC TTTCACTTCACCTAT Sca_2021 2034126 - 2033803 - | hypothetical protein (fragment 2) Sca_2022 2034528 - 2034133 - | hypothetical protein (fragment 1) Sca_2023 2035529 - 2034612 - | hypothetical protein TERM 2532 2035624 - 2035613 - R 95 -7.2 -6.20267 | opp_overlap 2035613 TTAAAAACAAAAAAA CCGC CGCA GCGG TTTTTGAAAATATCT TERM 2533 2035613 - 2035624 + r 81 -7.2 -4.61633 | opp_overlap 2035613 TTAAAAACAAAAAAA CCGC CGCA GCGG TTTTTGAAAATATCT Sca_2024 2036060 - 2035638 - | hypothetical protein TERM 2534 2036198 - 2036169 - R 100 -10.8 -4.60317 | opp_overlap 2036174 ATATAATAATTAAAA GGAGATGCTCTC AAATAA GACAGCATCTCC TCGCTAAAAACTATA gtaB 2037075 - 2036209 - | UTP-glucose-1-phosphate uridyltransferase TERM 2535 2037442 - 2037423 - R 95 -7.8 -5.39721 | TCATCATATAAAAAA GCACCTGC AATA ACAGGCGC TTAGAGTTAATTAAT capD 2039332 - 2037449 - | putative capsular polysaccharide synthesis enzyme TERM 2536 2037756 - 2037770 + g 76 -5.8 -4.67353 | overlap 2037752 CCATCTTTATATCCG CTTAAT CGG ATTAAG TTTTTGGCTAAATCA Sca_2027 2040198 - 2039452 - | hypothetical protein TERM 2537 2039568 - 2039586 + g 80 -5.9 -5.05606 | GTTGTTGAGTGCTGT GCGTCTC TGAAC GAGTCGC TTTGTTTTTCTTCGA Sca_2028 2040753 - 2040989 + | hypothetical protein TERM 2538 2040993 - 2041033 + G 73 -6.9 -4.08216 | opp_overlap 2040993 GCAGATGCATAACAC GTATTGTATTGTCGGCAAT CCG AATGTCGGCAAAACAACAC TTTTCAACGCACTGA TERM 2539 2041823 - 2041834 + G 71 -4.4 -4.75219 | TAACAAATAAAATCG TAGG TATC CCTA TTTTCTTAGTGATTA feoB 2040982 - 2042976 + | putative ferrous iron transport protein B Sca_2030 2042989 - 2043165 + | hypothetical protein TERM 2540 2043175 - 2043209 + F 100 -15.3 -4.64844 | opp_overlap 2043173 2043172 TCATAATATAAATTT TAAGCTCACTTTCTA TTAAT TAGAGAGTGAGCTTA TTTTGTATCTCTAAG Sca_2031 2043370 - 2043708 + | hypothetical protein Sca_2032 2043698 - 2044477 + | hypothetical protein TERM 2541 2044481 - 2044524 + T 100 -10.5 -4.3739 | opp_overlap 2044472 2044470 2044481 AATACAGATTAAAAA TCAGAGACCCTGAAGCT GCTAATTACA ATCTTTAGGGTCTCTGA TTTTATCCAAAACTA TERM 2542 2044524 - 2044481 - T 100 -10.5 -4.87037 | gap 1, opp_overlap 2044481, overlap 2044472 2044470 AATACAGATTAAAAA TCAGAGACCCTGAAG-CTGC TAATT ACAATCTTTAGGGTCTCTGA TTTTATCCAAAACTA Sca_2033 2045135 - 2044527 - | hypothetical protein Sca_2034 2045821 - 2045246 - | putative acetyltransferase, GNAT family Sca_2035 2045943 - 2046122 + | hypothetical protein TERM 2543 2046137 - 2046169 + T 100 -16.5 -5.38348 | opp_overlap 2046137 2046140 ATCTGTAATTCGAAA TAATCCCCTGACATT TCA ATTGTCAGGGGATTA TTTTTTAGTCTTTTT TERM 2544 2046169 - 2046137 - T 100 -16.5 -3.66356 | opp_overlap 2046137, overlap 2046140 ATCTGTAATTCGAAA TAATCCCCTGACATT TCA ATTGTCAGGGGATTA TTTTTTAGTCTTTTT TERM 2545 2046166 - 2046140 - T 100 -13.8 -3.96618 | opp_overlap 2046137, overlap 2046137 TGTAATTCGAAATAA TCCCCTGACATT TCA ATTGTCAGGGGA TTATTTTTTAGTCTT xylB 2047670 - 2046174 - | putative xylulokinase TERM 2546 2047831 - 2047808 - R 100 -11 -5.30686 | opp_overlap 2047803 2047808 AATATGTACAAAAAA GACACGAGCA ATAT TGCCCGTGCC TTTGATTTTAATCTT TERM 2547 2047808 - 2047831 + r 74 -6.6 -4.26292 | opp_overlap 2047808, overlap 2047803 AATATGTACAAAAAA GACACGAGCA ATAT TGCCCGTGCC TTTGATTTTAATCTT Sca_2037 2049077 - 2047848 - | hypothetical protein TERM 2548 2047935 - 2047949 + g 81 -8.6 -4.0162 | opp_overlap 2047934 2047929 GATACCGAATACTAG CATCCA AGT TGGATG TTTATAGTCTCCGAC TERM 2549 2048923 - 2048912 - G 73 -5.8 -4.36931 | TAATTGATAGCAAAA TCGC AAAC GCGA AACTTGCTGCAAATT Sca_2038 2049839 - 2049081 - | hypothetical protein Sca_2039 2051199 - 2049841 - | putative acetyl-CoA carboxylase (biotin carboxylase subunit), accC Sca_2040 2051658 - 2051215 - | putative biotin carboxyl carrier protein of acetyl-CoA carboxylase Sca_2041 2052665 - 2051658 - | hypothetical protein TERM 2550 2052215 - 2052230 + g 73 -3.3 -5.11613 | TCTCATTTAGTTTTT GATGA ATAAAG TCATC TTTTTTAAGTGCTCT Sca_2042 2053386 - 2052655 - | hypothetical protein TERM 2551 2053701 - 2053722 + r 85 -4.5 -5.61596 | opp_overlap 2053700 2053702, overlap 2053702 GTTATACTATAATAC ATCTTTTAC CGAA GTAAAAGAC TTTTTTTGTACAAAT TERM 2552 2053702 - 2053721 + r 76 -8 -3.95873 | opp_overlap 2053700 2053702, overlap 2053701 TTATACTATAATACA TCTTTTAC CGAA GTAAAAGA CTTTTTTTGTACAAA Sca_2043 2055023 - 2053953 - | hypothetical protein TERM 2553 2056629 - 2056616 - g 86 -6.7 -5.17353 | opp_overlap 2056616 2056615 AGACGTATTAAAAAA CCGAT GTCT ATCGG CTTAATCATCACACT Sca_2044 2055410 - 2056753 + | hypothetical protein TERM 2554 2056758 - 2056802 + T 100 -17.3 -5.03227 | opp_overlap 2056750 2056756 2056755 AACTGAATTAAATTT TAAGGCTGGTCCAGGGCATAT TAA ATGCGCTCTGTACCAGCCTTA TTTTATTTATAGTGT Sca_2045 2057182 - 2056805 - | hypothetical protein TERM 2555 2057302 - 2057317 + r 88 -4 -5.67711 | AGTGTATATCAATCA TTAAGC AATT GCTTGA TTTTTATTTTCTTTC Sca_2046 2058522 - 2057302 - | putative metabolite transport protein TERM 2556 2058679 - 2058640 - R 100 -8.9 -5.65927 | gap 1, opp_overlap 2058640 TATCCAAATAAAAAA TGCATGATAAACTGACTT TATTC AAGTCA-TCTACCATGCA TTCAATATGTGTTAT Sca_2047 2059472 - 2058699 - | putative truncated permease (fragment 2) Sca_2048 2059921 - 2059469 - | putative truncated permease (fragment 1) TERM 2557 2059981 - 2059951 - R 74 -7.6 -3.79295 | opp_overlap 2059950 GATTAAAAAAAGAGA GAGGCGGGATAG AGCTTTA CTATCCTACCTC ATGAATTAACTTTAT arcC 2061017 - 2060076 - | putative carbamate kinase Sca_2050 2061795 - 2061010 - | hypothetical protein TERM 2558 2061073 - 2061105 + g 71 -7.1 -3.91488 | gap 1, opp_overlap 2061073 2061077 2061079 TGTATCCTTACCAGA CGAAGAGCCGA-CT TTAAGC AGCTCGGCTATTCG TTCTTTGGAAGGATT Sca_2051 2063057 - 2061792 - | hypothetical protein fdrA 2064808 - 2063057 - | putative acyl-CoA synthetase allD 2065873 - 2064824 - | putative ureidoglycolate dehydrogenase TERM 2559 2065930 - 2065973 + r 83 -9 -4.09015 | gap 1, opp_overlap 2065932 2065936, overlap 2065933 2065934 2065936 2065970 TCTGACAATCTTAAA AATTAATGAGCGAGCG-TAGA CAA TCTAGCGCTCGCTCATATATG TTTCTAATATATTTT TERM 2560 2065971 - 2065932 - R 100 -11.6 -4.6902 | gap 1, opp_overlap 2065930 2065933 2065934 2065936 2065970, overlap 2065936 TGACAATCTTAAAAA TTAATGAGCGAGCG-TAGA CAA TCTAGCGCTCGCTCATATA TGTTTCTAATATATT TERM 2561 2065933 - 2065971 + r 100 -13.5 -3.61777 | gap 2, opp_overlap 2065932 2065936, overlap 2065930 2065934 2065936 2065970 GACAATCTTAAAAAT TA-ATGAGCGAGCG-TAGA CAA TCTAGCGCTCGCTCATATA TGTTTCTAATATATT TERM 2562 2065934 - 2065969 + r 100 -14.2 -3.37299 | gap 1, opp_overlap 2065932 2065936, overlap 2065933 2065930 2065936 ACAATCTTAAAAATT AATGAGCGAGCG-TAGA CAA TCTAGCGCTCGCTCATA TATGTTTCTAATATA TERM 2563 2065967 - 2065936 - R 100 -16.8 -3.82528 | gap 1, opp_overlap 2065934 2065933 2065930 2065936, overlap 2065932 AATCTTAAAAATTAA TGAGCGAGCG-TAGA CAA TCTAGCGCTCGCTCA TATATGTTTCTAATA TERM 2564 2065936 - 2065967 + r 100 -16.8 -3.24406 | gap 1, opp_overlap 2065936 2065932, overlap 2065934 2065933 2065930 AATCTTAAAAATTAA TGAGCGAGCG-TAGA CAA TCTAGCGCTCGCTCA TATATGTTTCTAATA allD 2067008 - 2065977 - | putative ureidoglycolate dehydrogenase Sca_2055 2067813 - 2067025 - | hypothetical protein Sca_2056 2069071 - 2067839 - | putative allantoate amidohydrolase Sca_2057 2069258 - 2069719 + | hypothetical protein Sca_2058 2069725 - 2070093 + | hypothetical protein TERM 2565 2070154 - 2070203 + T 100 -12.9 -3.95772 | opp_overlap 2070154 2070159, overlap 2070161 2070163 AGATTTATCTACAAA GCAAACAGACCCTCGAAGTGCTC AAAT GAGCATTCCGAGGGTCTATCTAC TTTCAATTTATTATT TERM 2566 2070203 - 2070154 - T 100 -19.5 -3.93136 | opp_overlap 2070154 2070161 2070163, overlap 2070159 AGATTTATCTACAAA GCAAACAGACCCTCGAAGTGCTC AAAT GAGCATTCCGAGGGTCTATCTAC TTTCAATTTATTATT TERM 2567 2070198 - 2070159 - T 100 -18 -4.15066 | opp_overlap 2070154 2070161 2070163, overlap 2070154 TATCTACAAAGCAAA CAGACCCTCGAAGTGCTC AAAT GAGCATTCCGAGGGTCTA TCTACTTTCAATTTA TERM 2568 2070161 - 2070196 + T 100 -18.4 -3.06885 | opp_overlap 2070159 2070154, overlap 2070154 2070163 TCTACAAAGCAAACA GACCCTCGAAGTGCTC AAAT GAGCATTCCGAGGGTC TATCTACTTTCAATT TERM 2569 2070163 - 2070194 + T 100 -15.2 -3.08344 | opp_overlap 2070159 2070154, overlap 2070161 2070154 TACAAAGCAAACAGA CCCTCGAAGTGCTC AAAT GAGCATTCCGAGGG TCTATCTACTTTCAA allB 2071344 - 2070214 - | putative allantoinase Sca_2060 2071580 - 2071341 - | hypothetical protein Sca_2061 2073057 - 2071570 - | putative allantoin permease TERM 2570 2074250 - 2074266 + G 79 -10.9 -2.93435 | opp_overlap 2074250 CAGTCAATATGTAAA CGAACGT CAA ACGTTCG TGTATAAGTGGTTAA TERM 2571 2074266 - 2074250 - g 88 -10.9 -3.77087 | opp_overlap 2074250 CAGTCAATATGTAAA CGAACGT CAA ACGTTCG TGTATAAGTGGTTAA Sca_2062 2073249 - 2074871 + | hypothetical protein TERM 2572 2075927 - 2075911 - g 78 -5.9 -4.81249 | TCTGAAATTGAAAAA GCAATTG AAG CAATTAC AGAACGCCGTGAAAT amaB 2074999 - 2076243 + | putative N-carbamoyl-beta-alanine amidohydrolase TERM 2573 2076281 - 2076244 - T 100 -18.7 -3.2779 | opp_overlap 2076244 2076250, overlap 2076250 GATATAAATATTTAA TTAAAAGGTCTGCCCCG ATTT CAAGGCAGACCTTTTAA TTTTGACTATCATTG TERM 2574 2076244 - 2076281 + T 100 -14.3 -4.26019 | opp_overlap 2076244 2076250, overlap 2076250 GATATAAATATTTAA TTAAAAGGTCTGCCCCG ATTT CAAGGCAGACCTTTTAA TTTTGACTATCATTG TERM 2575 2076250 - 2076275 + T 91 -8.9 -4.68645 | opp_overlap 2076244 2076250, overlap 2076244 AATATTTAATTAAAA GGTCTGCCCCG ATTT CAAGGCAGACC TTTTAATTTTGACTA TERM 2576 2076275 - 2076250 - T 100 -13.3 -4.45151 | opp_overlap 2076250 2076244, overlap 2076244 AATATTTAATTAAAA GGTCTGCCCCG ATTT CAAGGCAGACC TTTTAATTTTGACTA Sca_2064 2076944 - 2076291 - | hypothetical protein Sca_2065 2077289 - 2078224 + | putative UDP-glucose 4-epimerase TERM 2577 2078238 - 2078256 + T 77 -7.4 -4.24404 | opp_overlap 2078238 GAAGACACAGAAAAA CCCAGG CTTAGGT CCTGGG TTTTCGCATTTCAAT TERM 2578 2078256 - 2078238 - T 86 -7.4 -5.09685 | opp_overlap 2078238 GAAGACACAGAAAAA CCCAGG CTTAGGT CCTGGG TTTTCGCATTTCAAT Sca_2066 2079114 - 2078410 - | hypothetical protein TERM 2579 2079015 - 2079029 + g 71 -4.2 -4.85396 | GTTGTTGTGTCTGTG CATGTG CAT CACTTG TTTTCTTATCATTAT Sca_2067 2081032 - 2079191 - | hypothetical protein TERM 2580 2081325 - 2081301 - R 100 -9.4 -5.49568 | overlap 2081320 AACCCAAAATAAAAA CTCCCGTATT CTGAC AATACGAGAG TAGATACTACTTCAT nagA 2082498 - 2081341 - | putative N-acetylglucosamine-6-phosphate deacetylase TERM 2581 2081940 - 2081952 + g 78 -7.7 -4.19577 | opp_overlap 2081940 TGATATTGTCACTAA GTGCT TCT AGCAC TTCTTTTGCCCCTTC TERM 2582 2082621 - 2082599 - R 90 -7.7 -5.01845 | GATAATAATGAAAAA GCAGAGGCA TTTTT TTCCTCTGC TCAGCTTGCTTTTAA Sca_2069 2083158 - 2082691 - | hypothetical protein Sca_2070 2083671 - 2083237 - | hypothetical protein Sca_2071 2084802 - 2083921 - | putative 2-dehydropantoate 2-reductase panB 2084870 - 2085682 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 2583 2086178 - 2086160 - g 76 -4.6 -5.07567 | opp_overlap 2086160 CGATAGTCGAAAAAA TGGTTCAA GAT TTCAACCA TCCTATTGAGATTGT TERM 2584 2086336 - 2086315 - g 90 -8.7 -4.57073 | CAGCTTGCCGAAAAA CTCTATCGC GAAG GCGAAAGAG AGAGTAAAATAATTG panC 2085679 - 2086539 + | putative pantoate beta-alanine ligase panD 2086532 - 2086915 + | putative aspartate 1-decarboxylase TERM 2585 2087053 - 2087078 + T 100 -12 -4.25606 | opp_overlap 2087051 TTATGGCATACCACC CCCCTTACTA GTGGCG TAGTAAGGGG TTCTTTTCGGTATTA TERM 2586 2087205 - 2087232 + T 86 -7.1 -5.20154 | opp_overlap 2087205 AGTTTCTAACAAAAA GCCTTTGCT ATAAATTTTC AGCAAAGGC TTTTTTGAATTCTAT TERM 2587 2087232 - 2087205 - T 100 -9.2 -5.06816 | opp_overlap 2087205 AGTTTCTAACAAAAA GCCTTTGCTATA AATT TTCAGCAAAGGC TTTTTTGAATTCTAT Sca_2075 2088092 - 2087247 - | hypothetical protein TERM 2588 2087593 - 2087613 + g 70 -2.5 -5.24647 | GAAGCTAGTTTTAAT GGTGTTGCA TAC TGAGACATC TTTTCTTTTGTATAT TERM 2589 2088493 - 2088520 + H 100 -12.1 -5.64274 | overlap 2088466 ATTGCACTTTTTGAT GCGCTGTTTTC CTATAT GGAAACAGCGC TTTTTTTGTGGCTAA Sca_2076 2088657 - 2089127 + | hypothetical protein TERM 2590 2089394 - 2089372 - g 70 -3.4 -4.96501 | CCTTAGAAAAAGAAA CTGGTATCGA CAT CCAATATCAG CAAAACGGACTTATC goxB 2089131 - 2090258 + | putative glycine oxidase Sca_2078 2090242 - 2090442 + | hypothetical protein thiG 2090444 - 2091211 + | putative thiazole biosynthesis protein ThiG TERM 2591 2091269 - 2091256 - g 70 -8.1 -3.35255 | opp_overlap 2091255, overlap 2091254 TCTAATAATAACATA CGCTC AGAT GAGCG CTTCAGTCGTCAAAC Sca_2080 2091208 - 2092260 + | putative molybdopterin biosynthesis protein MoeB TERM 2592 2092344 - 2092390 + T 100 -14.6 -3.78242 | opp_overlap 2092344 TGCCCTACACAAAAA GCTCCCTATACAGCATTCAC GTTCTTA GTGTCTGTTGTATAGGGAGC TTATCTTCTGACTTT TERM 2593 2092390 - 2092344 - T 100 -12.4 -4.96848 | opp_overlap 2092344 TGCCCTACACAAAAA GCTCCCTATACAGCATTCAC GTTCTTA GTGTCTGTTGTATAGGGAGC TTATCTTCTGACTTT Sca_2081 2092639 - 2092418 - | hypothetical protein Sca_2082 2092954 - 2093406 + | putative transcriptional regulator protein TERM 2594 2093446 - 2093413 - T 100 -12.7 -4.47271 | gap 1, opp_overlap 2093413 GAAACTTAATGAAAA TGAGCAGTTGTC-CAT AAA ATAAGACAACTGCTCA TTTTTTATAACGACT TERM 2595 2093413 - 2093446 + T 100 -11.2 -5.24531 | opp_overlap 2093413 GAAACTTAATGAAAA TGAGCAGTTGTC CATAAAATAA GACAACTGCTCA TTTTTTATAACGACT Sca_2083 2094122 - 2093451 - | putative transcriptional regulator protein arcD 2095833 - 2094403 - | putative arginine/ornithine antiporter arcA 2097348 - 2096113 - | putative arginine deiminase TERM 2596 2096446 - 2096469 + g 73 -2.4 -5.28176 | opp_overlap 2096452, overlap 2096447 ATCACTTGGTTCGAT AGTGAAGATA TTCA TATCGTCACC TTTTTTCTCAATAGC TERM 2597 2097767 - 2097745 - R 100 -9.9 -5.59879 | CACAAACATAAAAAA CTGCCACCT TGTTT AGGTGACAG TGAATATTTAAATAT arcA 2099004 - 2097775 - | putative arginine deiminase Sca_2087 2099843 - 2099124 - | hypothetical protein vraB 2100992 - 2099844 - | putative acetyl-CoA c-acetyltransferase vraA 2102423 - 2100999 - | putative Co-A ligase TERM 2598 2102106 - 2102120 + g 70 -2.9 -5.17744 | TACAGACAATTGTTG GATAT GATTA ATATC TTTTTCTTCATCTGT TERM 2599 2103400 - 2103420 + G 70 -2.6 -5.18726 | overlap 2103404 ATTTAAAATGTGTGC TGAAGATG CAGTT CATCTTTG TTTTTCTTGTCGAAA TERM 2600 2103404 - 2103416 + G 73 -3.4 -5.09221 | overlap 2103400 AAAATGTGTGCTGAA GATG CAGTT CATC TTTGTTTTTCTTGTC Sca_2090 2102660 - 2103541 + | hypothetical protein TERM 2601 2103557 - 2103587 + F 83 -7 -5.1675 | CCAAATACTATTCCA GACAACTTTTTCTT TTC AATAAGAGGTTGTC TTTTTTAATGCCTAC Sca_2091 2103650 - 2104321 + | putative 2-haloalkanoic acid dehalogenase TERM 2602 2104437 - 2104478 + F 83 -9.7 -3.5867 | gap 1, opp_overlap 2104446, overlap 2104431 2104439 TGTACTAAATCACAG TT-TTCACAAGCAGTGACAT ATC ATGACATTGCTTGTGGATAA TTCTAAATTTTTATT TERM 2603 2104439 - 2104475 + F 100 -13.9 -2.8967 | opp_overlap 2104446, overlap 2104437 2104431 TACTAAATCACAGTT TTCACAAGCAGTGACAT ATC ATGACATTGCTTGTGGA TAATTCTAAATTTTT TERM 2604 2104987 - 2104971 - g 76 -2.1 -5.56673 | ATTTACAACAAAAAA GTTGCTG ATG CTGCTAC AGCTGACATCCCTGG TERM 2605 2105633 - 2105619 - g 73 -3.5 -5.09204 | overlap 2105620 2105621 ACACCTGAACAAAAA GCTGC TGCAC ACAGC AAACTTAATGATGAT TERM 2606 2105968 - 2105958 - g 73 -2.4 -5.25772 | AAAGCACAACAAAAA GCTG AAG CTGC TAAAAAACAATTACC TERM 2607 2105995 - 2105979 - g 71 -5.1 -4.61482 | overlap 2105982 GCTGCTAAAAAACAA TTACCAG AAA CTGGTGA ACAAGATCAAGTATT Sca_2092 2104644 - 2106092 + | hypothetical protein TERM 2608 2106178 - 2106138 - T 100 -9.2 -4.55689 | gap 2, opp_overlap 2106166, overlap 2106150 ATCACCTATACAAAA TCCCGACAAAAAGAAGGAGT CAT AC-CCTTCCCTT-GCCGGGA TTTTTTCTCTTAACA TERM 2609 2106167 - 2106150 - T 72 -4.9 -4.86033 | gap 1, opp_overlap 2106166, overlap 2106138 AAATCCCGACAAAAA GAAGGAGT CAT AC-CCTTC CCTTGCCGGGATTTT TERM 2610 2106166 - 2106178 + T 81 -4.8 -5.47159 | opp_overlap 2106150 2106138 AAGGAGTCATACCCT TCCC TTGCC GGGA TTTTTTCTCTTAACA Sca_2093 2106985 - 2106206 - | hypothetical protein Sca_2094 2108259 - 2107006 - | putative alpha-ketoglutarate permease xylB 2109947 - 2108340 - | putative xylulokinase TERM 2611 2110265 - 2110236 - R 91 -10.9 -3.75153 | opp_overlap 2110243 2110244, overlap 2110244 GTGTTTTAACGCAAA TTAAAAAACGGAC CGAA GTCCGCTTTTCAA CCTACATTTAAACTT TERM 2612 2110257 - 2110244 - R 95 -8.1 -5.38497 | opp_overlap 2110243 2110244, overlap 2110236 ACGCAAATTAAAAAA CGGAC CGAA GTCCG CTTTTCAACCTACAT TERM 2613 2110244 - 2110257 + r 70 -8.1 -3.06694 | opp_overlap 2110244 2110236, overlap 2110243 ACGCAAATTAAAAAA CGGAC CGAA GTCCG CTTTTCAACCTACAT Sca_2096 2111391 - 2110273 - | putative ABC transporter TERM 2614 2111045 - 2111056 + g 71 -4.4 -4.72007 | GCTCCACCAATCATC TGCT TTAC AGCA TTTGTTTTACTGGGG Sca_2097 2112115 - 2111381 - | putative ABC transporter TERM 2615 2112242 - 2112214 - R 100 -13.2 -5.04987 | AATACTGCTAAAAAA GCGCGGAGACAG TCAAT CTATCTCCACGC CTAATCAGCCTTAAA Sca_2098 2112782 - 2112261 - | hypothetical protein Sca_2099 2113528 - 2112977 - | hypothetical protein TERM 2616 2114264 - 2114250 - g 70 -2.8 -5.15117 | CAAAATGCTAAAAAA GCCA TTGTAGT TGGC GGCGGTTATATCGGC TERM 2617 2114452 - 2114442 - g 70 -5.4 -4.4518 | overlap 2114437 AACGAAAACGTAAAA GCTT TAA AAGC TGATGACAATAATAA Sca_2100 2113806 - 2115170 + | putative NADH oxidase TERM 2618 2115258 - 2115214 - T 95 -11.6 -3.76383 | gap 2, opp_overlap 2115223, overlap 2115218 2115223 AAAAAGTTAATATAA GCAATTGAAGAGGCGGTACGCA TGA TGCGTACCGCCTCTTTTA--GC TATAGATTCATTTCT TERM 2619 2115256 - 2115218 - T 100 -19 -3.54784 | opp_overlap 2115223, overlap 2115214 2115223 AGTTAATATAAGCAA TTGAAGAGGCGGTACGCA TGA TGCGTACCGCCTCTTTTA GCTATAGATTCATTT TERM 2620 2115223 - 2115251 + T 100 -23.3 -4.24606 | opp_overlap 2115223 2115218 2115214 ATATAAGCAATTGAA GAGGCGGTACGCA TGA TGCGTACCGCCTC TTTTAGCTATAGATT TERM 2621 2115251 - 2115223 - T 100 -23.3 -3.25758 | opp_overlap 2115223, overlap 2115218 2115214 ATATAAGCAATTGAA GAGGCGGTACGCA TGA TGCGTACCGCCTC TTTTAGCTATAGATT Sca_2101 2116400 - 2115258 - | hypothetical protein TERM 2622 2115897 - 2115859 - G 75 -5.3 -4.84761 | overlap 2115860 AGACCTTTAGAAAAA CGTTGTGCTTCATCCAG TTCAG CTAGAGAACGCACAACA CGTTGGCTTAATAAT TERM 2623 2116821 - 2116763 - R 83 -10.5 -3.41878 | opp_overlap 2116763 2116764, overlap 2116765 CGCTCTAACTCAGAA CATGTACTGCACCCCTAATGTTGAA TTTTTTGGG TTCAACTTTAGGGGTGCACTACAAC GTTTCTGAAGGAGCG TERM 2624 2116763 - 2116821 + r 100 -12.6 -2.91276 | opp_overlap 2116763 2116765, overlap 2116764 CGCTCTAACTCAGAA CATGTACTGCACCCCTAATGTTGAATTT TTT GGGTTCAACTTTAGGGGTGCACTACAAC GTTTCTGAAGGAGCG TERM 2625 2116819 - 2116765 - R 100 -17.5 -3.281 | opp_overlap 2116763 2116764, overlap 2116763 CTCTAACTCAGAACA TGTACTGCACCCCTAATGTTGAA TTTTTTGGG TTCAACTTTAGGGGTGCACTACA ACGTTTCTGAAGGAG aldA 2118372 - 2116876 - | putative aldehyde dehydrogenase TERM 2626 2118680 - 2118646 - R 93 -5.9 -6.23317 | gap 2 ATAAAAAGAAAAAAA CCCGCTCTAACTCAAAT TCA ACTTGAG--AGAACGGG TTTTCATTTATTCAA aldA 2120231 - 2118699 - | putative aldehyde dehydrogenase apbA 2121387 - 2120452 - | putative 2-dehydropantoate 2-reductase TERM 2627 2121536 - 2121516 - R 88 -9 -4.38322 | opp_overlap 2121518, overlap 2121513 TTAACTATAAAAGAA GAGCCGGA GAGTT TCCGACTC TATAAGATTTATTTT Sca_2105 2122879 - 2121545 - | putative amino acid permease TERM 2628 2122987 - 2123006 + r 71 -5.8 -4.4715 | GCAATTCATATAATT TCGATATA CGTT TGTATCGA TTTTATAGATTGCGG Sca_2106 2123546 - 2123244 - | hypothetical protein tagF2 2125790 - 2123583 - | putative teichoic acid biosynthesis protein TERM 2629 2124253 - 2124266 + g 77 -2.5 -5.5112 | opp_overlap 2124246 2124253, overlap 2124246 TAATCTAATGCAAAA TATTT TTTC AAATA TTTTTTGTTAATGAA TERM 2630 2124485 - 2124501 + g 74 -8.1 -3.78934 | opp_overlap 2124485 TACTTAAATTAATGA TGGAATT GGT AATTCCA TTGTTGTAAAAACCG TERM 2631 2125997 - 2126034 + r 74 -8.6 -3.29246 | opp_overlap 2125999, overlap 2125995 2125993 2125992 2125999 ATACAAAAATTAAAA AAGAGACCCTTTTGAT GTGCAA ATCAAAAAGGTCTCTA TATCTATTATTTTTC TERM 2632 2125999 - 2126032 + r 91 -11.2 -3.17888 | opp_overlap 2125999, overlap 2125997 2125995 2125993 2125992 ACAAAAATTAAAAAA GAGACCCTTTTGAT GTGCAA ATCAAAAAGGTCTC TATATCTATTATTTT TERM 2633 2126032 - 2125999 - R 100 -13.4 -5.56112 | opp_overlap 2125999 2125997 2125995 2125993 2125992 ACAAAAATTAAAAAA GAGACCCTTTTGAT GTGCAA ATCAAAAAGGTCTC TATATCTATTATTTT tagD 2126476 - 2126081 - | putative teichoic acid biosynthesis protein D TERM 2634 2126331 - 2126342 + g 70 -3 -5.17786 | opp_overlap 2126331 TGTTCATAACTATAA TAAG ATTT CTTA TTTTTAATTTTATTA tagF 2128671 - 2126494 - | putative teichoic acid biosynthesis protein F TERM 2635 2128772 - 2128787 + r 71 -7.6 -3.49486 | opp_overlap 2128771, overlap 2128768 2128779 AACTTTTTTATTAAC TGCTTG TTTT CAAGCA TCTATTTCTTTAAAT TERM 2636 2128779 - 2128814 + r 78 -4.2 -5.4505 | opp_overlap 2128771, overlap 2128772 2128768 TTATTAACTGCTTGT TTTCAAGCATCTATTT CTTT AAATAACTGTTTGAAA TTTTTTATTGCCGCC tagE 2130274 - 2128781 - | putative teichoic acid biosynthesis protein E TERM 2637 2129733 - 2129708 - G 70 -2.5 -5.14965 | ATCTTCATCAAAAAA TCTTCGGCAAT ATAA ATTGCCATCGA GGTCATAAAATTGAT TERM 2638 2130451 - 2130472 + r 84 -8.8 -4.24002 | opp_overlap 2130451 ATATACTTCAAAAAA CGTACTTG ACAAAA CAAGTACG TTTTCACCTTTAAAG TERM 2639 2130472 - 2130451 - R 100 -8.8 -5.08169 | opp_overlap 2130451 ATATACTTCAAAAAA CGTACTTG ACAAAA CAAGTACG TTTTCACCTTTAAAG Sca_2111 2130851 - 2130489 - | hypothetical protein Sca_2112 2131432 - 2130854 - | hypothetical protein TERM 2640 2131201 - 2131191 - G 75 -5.4 -4.78029 | overlap 2131200 TTAACAAAACCAAAA CCAT ATA ATGG TCCAGAAGCACCGCC Sca_2113 2132417 - 2131452 - | putative dihydroxyacetone kinase Sca_2114 2132662 - 2132916 + | hypothetical protein TERM 2641 2132947 - 2132920 - T 100 -11.4 -5.00895 | opp_overlap 2132922, overlap 2132922 TCTATGATATAAAAA TACCTCTCACTT CAAA AAGTGAGAGGTT TTAATTTACTTTATT TERM 2642 2132922 - 2132945 + T 100 -14 -4.64464 | opp_overlap 2132922 2132920 TATGATATAAAAATA CCTCTCACTT CAAA AAGTGAGAGG TTTTAATTTACTTTA TERM 2643 2132945 - 2132922 - T 100 -14 -4.12748 | opp_overlap 2132922, overlap 2132920 TATGATATAAAAATA CCTCTCACTT CAAA AAGTGAGAGG TTTTAATTTACTTTA phnA 2133303 - 2132953 - | putative alkylphosphonate utilization operon protein PhnA Sca_2116 2135078 - 2133489 - | putative ABC transporter membrane-spanning protein TERM 2644 2133698 - 2133709 + g 74 -4.4 -5.0133 | opp_overlap 2133698 CTAAATAAAGATAGA TGAG AACA CTCA TTTTTTCAAACCATC Sca_2117 2135979 - 2135080 - | putative ABC transporter ATP-binding protein TERM 2645 2135694 - 2135680 - G 78 -8.6 -3.77832 | TTGTAAACTTAACAA GAAGTC GAT GACTTC TCCGCCTGTTAAATT TERM 2646 2136067 - 2136099 + r 100 -12.9 -2.95091 | opp_overlap 2136067, overlap 2136070 CAGATAATATAAAAA GAACAGCAATTCTTT TAT AAAGCGTTGCTGTTC TATATAAATTCAACT TERM 2647 2136099 - 2136067 - R 100 -10.7 -5.1764 | opp_overlap 2136067 2136070 CAGATAATATAAAAA GAACAGCAATTCTTT TAT AAAGCGTTGCTGTTC TATATAAATTCAACT TERM 2648 2136070 - 2136096 + r 77 -8.8 -3.61983 | opp_overlap 2136067, overlap 2136067 ATAATATAAAAAGAA CAGCAATTCTTT TAT AAAGCGTTGCTG TTCTATATAAATTCA Sca_2118 2136556 - 2136125 - | hypothetical protein Sca_2119 2136759 - 2136553 - | hypothetical protein Sca_2120 2137080 - 2138447 + | putative amino acid transporter TERM 2649 2138506 - 2138448 - T 100 -15.8 -4.26386 | gap 3, opp_overlap 2138462, overlap 2138462 TCAAAAAGTAAATAA TTGAGTCTTAAAAACAGCGGTCATCC-CA TTTA TGAGGGTGACCGCTGTTTTTAAGACTC-- AACCATATAAATTCA TERM 2650 2138462 - 2138494 + T 100 -15 -4.59773 | gap 1, opp_overlap 2138448 2138462 ATTGAGTCTTAAAAA CAGCGGTCATCC-CA TTTA TGAGGGTGACCGCTG TTTTTAAGACTCAAC TERM 2651 2138494 - 2138462 - T 100 -12.8 -4.60041 | gap 1, opp_overlap 2138462, overlap 2138448 ATTGAGTCTTAAAAA CAGCGGTCATCC-CA TTTA TGAGGGTGACCGCTG TTTTTAAGACTCAAC TERM 2652 2138526 - 2138550 + T 75 -10 -2.54707 | opp_overlap 2138527, overlap 2138525 2138523 ATATAAATTCAAAAA ACCGGAACAG CAGAA CTGTTCCGGC ATCTATTATATATAC TERM 2653 2138549 - 2138527 - T 100 -14.2 -5.24449 | opp_overlap 2138526 2138525 2138523 TATAAATTCAAAAAA CCGGAACAGC AGA ACTGTTCCGG CATCTATTATATATA ddh 2139574 - 2138582 - | D-specific D-2-hydroxyacid dehydrogenase TERM 2654 2139922 - 2139957 + r 100 -13.4 -5.09521 | opp_overlap 2139922 AATCAAAACTAAAAA CCTCTTTGAAGCAGAT TCAA AACTGCTCCAAAGAGG TTTTTAGTTTATTCA TERM 2655 2139957 - 2139922 - R 100 -15.6 -5.13016 | opp_overlap 2139922 AATCAAAACTAAAAA CCTCTTTGAAGCAGAT TCAA AACTGCTCCAAAGAGG TTTTTAGTTTATTCA Sca_2122 2140267 - 2139974 - | hypothetical protein Sca_2123 2140799 - 2140323 - | putative Na(+)/H(+) antiporter subunit G Sca_2124 2141073 - 2140777 - | putative Na(+)/H(+) antiporter subunit F Sca_2125 2141558 - 2141070 - | putative Na(+)/H(+) antiporter subunit E Sca_2126 2143054 - 2141558 - | MnhD, putative Na(+)/H(+) antiporter subunit D Sca_2127 2143394 - 2143047 - | putative Na(+)/H(+) antiporter subunit C TERM 2656 2143151 - 2143141 - G 76 -6.8 -4.39107 | AACACAAGCAAGAAA GCAG TTA CTGC AAAACCAATTACAAT Sca_2128 2143816 - 2143391 - | putative Na(+)/H(+) antiporter subunit B TERM 2657 2143624 - 2143639 + g 88 -7.6 -4.87665 | opp_overlap 2143623 2143616 2143624 CACGAAAGTCAATAG GTAGTG ACTT CACTAC TTTTTGTACATCAAA Sca_2129 2146277 - 2143803 - | putative NADH dehydrogenase I chain L TERM 2658 2143931 - 2143941 + g 72 -4 -5.00884 | AATCTCCTAATATAG CATT CAC AATG TTTTTTGAGCCGGCT TERM 2659 2145008 - 2144995 - G 81 -5.3 -5.24129 | TCTTTTGATAAAAAA CCATT AAAG AATGG TAAACCAGCCATAGC TERM 2660 2146158 - 2146199 + g 100 -6.7 -6.23317 | gap 1, opp_overlap 2146157, overlap 2146160 TTGTACAAAATCATC TGCAGCAACTT-CAGGTTGA ACA TCAGTCTGTAAGGTGCTGAA TTTTTTTATTTTTAT TERM 2661 2146160 - 2146197 + g 75 -9.3 -3.1344 | gap 1, opp_overlap 2146157, overlap 2146158 GTACAAAATCATCTG CAGCAACTT-CAGGTTGA ACA TCAGTCTGTAAGGTGCTG AATTTTTTTATTTTT Sca_2130 2146956 - 2146363 - | putative phage integrase family protein TERM 2662 2147176 - 2147197 + r 71 -5.9 -4.38774 | opp_overlap 2147176 TTTAACGTAAAAAAA GAAATGAAC CTAC GTCCATTTC TTTTCATCTACTATT TERM 2663 2147197 - 2147176 - R 95 -8.1 -5.53288 | opp_overlap 2147176 TTTAACGTAAAAAAA GAAATGAAC CTAC GTCCATTTC TTTTCATCTACTATT Sca_2131 2147927 - 2147208 - | hypothetical protein Sca_2132 2148133 - 2149341 + | hypothetical protein Sca_2133 2149345 - 2150481 + | hypothetical protein TERM 2664 2150527 - 2150491 - T 91 -9.7 -4.26832 | opp_overlap 2150491 2150496, overlap 2150486 2150496 GAATAATAAATGAAA TAAAAGTCTTCGC TGAATATGTGT GCGAAGACTTTTA TTTGCGCTTATATTT TERM 2665 2150491 - 2150527 + T 86 -9.7 -3.72485 | opp_overlap 2150491 2150486 2150496, overlap 2150496 GAATAATAAATGAAA TAAAAGTCTTCGC TGAATATGTGT GCGAAGACTTTTA TTTGCGCTTATATTT TERM 2666 2150522 - 2150496 - T 76 -5.2 -5.06223 | opp_overlap 2150491 2150496, overlap 2150491 2150486 ATAAATGAAATAAAA GTCTTCGC TGAATATGTGT GCGAAGAC TTTTATTTGCGCTTA TERM 2667 2150496 - 2150522 + T 74 -5.2 -4.90525 | opp_overlap 2150496 2150491 2150486, overlap 2150491 ATAAATGAAATAAAA GTCTTCGC TGAATATGTGT GCGAAGAC TTTTATTTGCGCTTA TERM 2668 2150921 - 2150901 - T 95 -7.6 -5.5074 | opp_overlap 2150901 TAATTCAATAAAAAA GACAGACT ACTTA AGTCTGCC TTGTCAGCTATTGCA Sca_2134 2151585 - 2150929 - | hypothetical protein TERM 2669 2151943 - 2151966 + H 76 -7.6 -3.96224 | gap 1, opp_overlap 2151939 2151943 2151946 GTATTGAAGTATCAA GTAGTTGAGAA ACA TTCTCAAC-AC TTTCTCAATAGTTTA TERM 2670 2151964 - 2151946 - H 78 -10.4 -2.81815 | opp_overlap 2151943, overlap 2151939 2151943 TTGAAGTATCAAGTA GTTGAGAA ACA TTCTCAAC ACTTTCTCAATAGTT TERM 2671 2152131 - 2152175 + H 100 -10.3 -5.2166 | opp_overlap 2152131 ACGTGCTGAAAACTA CTCCCGTCATTCTC-ATATGC CATAC GCATATTGAGG-TGATGGGAG TTTTTTGCGTTATTA fdh 2152258 - 2153268 + | putative NAD-dependent formate dehydrogenase TERM 2672 2153283 - 2153269 - T 71 -5.7 -4.38412 | opp_overlap 2153268 2153269 AAAAAAGATAAATAA GTTCG GATAT CGAAC GTTGTCATAAATTGA TERM 2673 2153351 - 2153380 + T 100 -14.5 -5.76633 | TAAACTATCTCAAGG TCGCTTTCTAGTT GTAA AACTAGGAAGCGA TTTTTTTATGTATAA TERM 2674 2153437 - 2153416 - T 90 -6.6 -5.50723 | opp_overlap 2153402 2153416 TCAGGAAAATAAAAA GACTTTCG ATTGAA CGAAAGCC TTCATAATTTGCTGT Sca_2136 2154237 - 2153452 - | hypothetical protein Sca_2137 2155233 - 2154367 - | putative RpiR family transcriptional regulator Sca_2138 2156712 - 2155237 - | putative PTS system, IIBC components TERM 2675 2156326 - 2156337 + g 81 -4.4 -5.25976 | opp_overlap 2156309, overlap 2156310 2156310 2156301 GCGTAAAACCTTACG CCAT TTCG ATGG TTTCTTTTTTTGATT Sca_2139 2157609 - 2156725 - | putative glucokinase regulatory protein Sca_2140 2158663 - 2157599 - | hypothetical protein TERM 2676 2158856 - 2158833 - R 93 -8.2 -5.24449 | opp_overlap 2158833 TATAAACTTAAAAAA GTACGGAC CATTTAAC GTCCGTAC TTTTAAAAATCCCTC TERM 2677 2158833 - 2158856 + r 81 -8.2 -4.11692 | opp_overlap 2158833 TATAAACTTAAAAAA GTACGGAC CATTTAAC GTCCGTAC TTTTAAAAATCCCTC TERM 2678 2158889 - 2158937 + r 91 -10 -4.3179 | gap 1, opp_overlap 2158893 2158899, overlap 2158893 TTTGAAAGGATATAT TAA-ATGAAAACCTGATTCTGTA TATT TAGAGAATCAGGCTTTCATATTA TTTATACTTTTTTAA TERM 2679 2158932 - 2158893 - R 100 -14.6 -3.9163 | opp_overlap 2158889 2158893, overlap 2158899 AAAGGATATATTAAA TGAAAACCTGATTCTGTA TATT TAGAGAATCAGGCTTTCA TATTATTTATACTTT TERM 2680 2158893 - 2158932 + r 100 -12.4 -3.67393 | opp_overlap 2158893 2158899, overlap 2158889 AAAGGATATATTAAA TGAAAACCTGATTCTGTA TATT TAGAGAATCAGGCTTTCA TATTATTTATACTTT TERM 2681 2158926 - 2158899 - R 100 -10 -4.6038 | opp_overlap 2158893 2158889, overlap 2158893 TATATTAAATGAAAA CCTGATTCTGTA TATT TAGAGAATCAGG CTTTCATATTATTTA Sca_2141 2159292 - 2158939 - | hypothetical protein TERM 2682 2160182 - 2160171 - g 71 -4.4 -4.8048 | opp_overlap 2160171 TTGCGACATTAAAAA CCTT TCGA AAGG TTCTCGTATTTATTT fmdA 2159485 - 2160678 + | putative formamidase TERM 2683 2160937 - 2160914 - T 74 -2.4 -5.54403 | AAAAAATAATAAAAA GCCTAGACCA TGGA TGGTGTAAAC GAAGCGTAACCGGTT TERM 2684 2161329 - 2161319 - T 72 -6.8 -4.09503 | AAACACACTAAATAA CAGG TAT CCTG TTCACCCCTTTGTTA TERM 2685 2161475 - 2161443 - T 100 -10 -4.58283 | gap 1, opp_overlap 2161449, overlap 2161444 2161448 2161449 GAAGTCTCTGAAAAA GGAAATGACTCACGC CAAA GCGTGAGTC-TTTCT TATTGGTTAATCAGC TERM 2686 2161474 - 2161444 - T 100 -13.5 -3.34488 | gap 1, opp_overlap 2161449, overlap 2161443 2161448 2161449 AAGTCTCTGAAAAAG GAAATGACTCACGC CAAA GCGTGAGTC-TTTC TTATTGGTTAATCAG TERM 2687 2161471 - 2161448 - T 100 -11 -4.32046 | opp_overlap 2161449, overlap 2161444 2161443 2161449 CTCTGAAAAAGGAAA TGACTCACGC CAAA GCGTGAGTCT TTCTTATTGGTTAAT TERM 2688 2161470 - 2161449 - T 100 -14.5 -3.18505 | opp_overlap 2161449, overlap 2161448 2161444 2161443 TCTGAAAAAGGAAAT GACTCACGC CAAA GCGTGAGTC TTTCTTATTGGTTAA TERM 2689 2161449 - 2161470 + T 100 -14.5 -4.51994 | opp_overlap 2161448 2161444 2161443 2161449 TCTGAAAAAGGAAAT GACTCACGC CAAA GCGTGAGTC TTTCTTATTGGTTAA Sca_2143 2162189 - 2161482 - | hypothetical protein TERM 2690 2162827 - 2162815 - g 78 -6.3 -4.77896 | opp_overlap 2162816, overlap 2162817 GAAGCAATTGAAAAA GTTGT TAA ACAAC AATTTGAAGTTGCAA fda 2162356 - 2163246 + | fructose-bisphosphate aldolase class I TERM 2691 2163257 - 2163237 - f 74 -7.7 -3.73224 | opp_overlap 2163241, overlap 2163241 CGATGCTTCAGTAAA CAAAGCTTA ATC TAAGCTTTA AAATAATAACGAGCC TERM 2692 2163253 - 2163241 - f 74 -6.3 -4.49556 | opp_overlap 2163241, overlap 2163237 GCTTCAGTAAACAAA GCTTA ATC TAAGC TTTAAAATAATAACG TERM 2693 2163266 - 2163292 + F 100 -16.6 -5.42131 | opp_overlap 2163267, overlap 2163267 AGCTTTAAAATAATA ACGAGCCCCTTC TTT GAAGGGGCTCGC TTTTTTGTATAATTC TERM 2694 2163267 - 2163291 + F 100 -20.1 -3.83652 | opp_overlap 2163267, overlap 2163266 GCTTTAAAATAATAA CGAGCCCCTTC TTT GAAGGGGCTCG CTTTTTTGTATAATT TERM 2695 2163291 - 2163267 - f 100 -20.1 -4.20868 | opp_overlap 2163267 2163266 GCTTTAAAATAATAA CGAGCCCCTTC TTT GAAGGGGCTCG CTTTTTTGTATAATT Sca_2145 2163619 - 2164602 + | hypothetical protein TERM 2696 2164632 - 2164663 + T 100 -8.8 -5.06411 | CTTTATTAATTACCG CCACTATTCCAAAT GGTT ATATGGATTAGTGG TTTATTTTATTTTCT flaR 2165169 - 2164657 - | putative DNA topology modulation protein FlaR TERM 2697 2165362 - 2165339 - R 100 -12.5 -5.12068 | CATATCCAACAAAAA GCCTGACTC CATCAC GAGTCAGGC ACTAAAATCATTTTT Sca_2147 2168240 - 2165370 - | putative helicase TERM 2698 2165950 - 2165970 + g 71 -9.1 -3.21099 | opp_overlap 2165952 TCACTTAATCCGATA TATTTGCCA TTT TGGCGAATA TTAATAATAGGCGGG TERM 2699 2167191 - 2167178 - G 70 -5.3 -4.39407 | GGAAATAATGGAAAA TACGT TGAT ACGTA TCAGCAGCTGAACGA Sca_2148 2168638 - 2168246 - | putative mutator protein mutT TERM 2700 2168770 - 2168746 - R 100 -11.5 -5.24531 | ATTTTTTACAAAAAA TAAGGCAGACG GAT CATCTGCCTCA CTGTCGATTTATAAT Sca_2149 2169389 - 2168823 - | hypothetical protein TERM 2701 2169466 - 2169444 - R 100 -9.2 -5.73563 | opp_overlap 2169444 2169449 ATGAAAGCAAAAAAA CAGAATCCGT TTA ATGGATTCTG TTTAAAGTGTTACTT TERM 2702 2169444 - 2169466 + r 93 -11.4 -3.67918 | opp_overlap 2169444, overlap 2169449 ATGAAAGCAAAAAAA CAGAATCCGT TTA ATGGATTCTG TTTAAAGTGTTACTT Sca_2150 2171644 - 2169476 - | putative teichoic acid biosynthesis protein F TERM 2703 2171923 - 2171901 - R 100 -9.1 -4.96848 | opp_overlap 2171918 TTTTCCATACAAAAA GGCCCAGCC TTTGT GACTGAGCC CGAGCTTATTATCTT Sca_2151 2174596 - 2171966 - | putative antibiotic transport-associated protein Sca_2152 2174747 - 2175322 + | putative transcriptional regulator tetR-family TERM 2704 2175327 - 2175352 + F 95 -6.2 -5.80003 | opp_overlap 2175327 AAGATGCTTAATCAA TAGTGCAGCT GAATCG GGCTGTACTA TTTTTTATTTCTTCG Sca_2153 2175492 - 2177315 + | hypothetical protein TERM 2705 2177330 - 2177372 + T 75 -4.9 -5.12172 | gap 1, opp_overlap 2177330, overlap 2177325 2177339 AGCATACACTAAAAA CTCCCT-ATTGTGTTCACTC TATT GAGTGACTACTTTTAGGGAG TTTTATTTATTCCTA Sca_2154 2178947 - 2177400 - | hypothetical protein TERM 2706 2178709 - 2178719 + g 70 -3.2 -5.01732 | ATATTGCCAAGGATA CGAG ACT CTTG TTTTTTAGAACCGTT Sca_2155 2180246 - 2178963 - | hypothetical protein TERM 2707 2179533 - 2179546 + g 70 -8.1 -3.29471 | opp_overlap 2179533 2179532 TAATGAATCTAAAAC CGAGC TGCT GCTCG TTGATGTACTGCCGC Sca_2156 2181937 - 2180672 - | hypothetical protein Sca_2157 2182546 - 2181956 - | hypothetical protein Sca_2158 2183435 - 2182524 - | putative UDP-glucose 4-epimerase Sca_2159 2184545 - 2183436 - | hypothetical protein TERM 2708 2183632 - 2183651 + g 73 -9.4 -2.8272 | overlap 2183631 ATCGGATTAACCTTT CCTTCTTT TGAA AAAGAAGG CTTCTGGTTTTCTAA Sca_2160 2185429 - 2184542 - | hypothetical protein Sca_2161 2185746 - 2185411 - | hypothetical protein TERM 2709 2186042 - 2186032 - R 85 -2.6 -5.85737 | ATATTAATAAAAAAA TTAT CAA ATAA ACATTACGTTAACAA TERM 2710 2186215 - 2186258 + r 71 -7.7 -3.54256 | gap 2, opp_overlap 2186216 2186217, overlap 2186216 2186226 2186250 TCTTCAAAAAACAAA AC--CCCCCAAAAGTTAGATT TGTA AGTCTAACTTTTGGGGGTAGC TCTCTTTTTAAAAAT TERM 2711 2186216 - 2186257 + r 85 -11.2 -2.71831 | gap 2, opp_overlap 2186216 2186217, overlap 2186215 2186226 2186250 CTTCAAAAAACAAAA C--CCCCCAAAAGTTAGATT TGTA AGTCTAACTTTTGGGGGTAG CTCTCTTTTTAAAAA TERM 2712 2186255 - 2186216 - R 100 -15.2 -5.42198 | opp_overlap 2186216 2186215 2186226 2186250, overlap 2186217 CTTCAAAAAACAAAA CCCCCCAAAAGTTAGATT TGTA AGTCTAACTTTTGGGGGT AGCTCTCTTTTTAAA TERM 2713 2186254 - 2186217 - R 100 -18.7 -3.83692 | opp_overlap 2186216 2186215 2186226 2186250, overlap 2186216 TTCAAAAAACAAAAC CCCCCAAAAGTTAGATT TGTA AGTCTAACTTTTGGGGG TAGCTCTCTTTTTAA cudB 2187968 - 2186280 - | choline dehydrogenase cudA 2189627 - 2188134 - | glycine betaine aldehyde dehydrogenase TERM 2714 2189351 - 2189367 + g 79 -5.1 -5.08483 | CCAAAGTTTCAAGTT TCGCTAA TTC TTCGCGA TTTTCTTTAATTTTA TERM 2715 2189644 - 2189667 + H 70 -6.2 -4.13343 | overlap 2189639 2189643 TCGACCTCCGTTAAC TTTGTTAAAT TTTT ATTTAACGAA TTTTACAAAGTTTAT cudC 2189848 - 2190393 + | putative transcriptional regulator of cud operon TERM 2716 2190475 - 2190435 - T 100 -18.5 -4.04474 | opp_overlap 2190435 2190439, overlap 2190439 ATATTTTGATATAAA CAAAGCACCAACGTCCTTA AAC CAAGGATGCTGGTGCTTTG TTTTGTATTCTATTA TERM 2717 2190435 - 2190475 + T 100 -17.8 -4.79373 | opp_overlap 2190435 2190439, overlap 2190439 ATATTTTGATATAAA CAAAGCACCAACGTCCTT AAACC AAGGATGCTGGTGCTTTG TTTTGTATTCTATTA TERM 2718 2190471 - 2190439 - T 100 -13.5 -4.62441 | opp_overlap 2190435 2190439, overlap 2190435 TTTGATATAAACAAA GCACCAACGTCCTTA AAC CAAGGATGCTGGTGC TTTGTTTTGTATTCT TERM 2719 2190439 - 2190471 + T 100 -12.8 -4.89519 | opp_overlap 2190439 2190435, overlap 2190435 TTTGATATAAACAAA GCACCAACGTCCTT AAACC AAGGATGCTGGTGC TTTGTTTTGTATTCT cudT 2192147 - 2190492 - | choline transporter TERM 2720 2192309 - 2192281 - R 79 -8.3 -3.87576 | overlap 2192275 2192282 TTATAATAATGCAAA TTCATGCAGATTA AAA TAATCTACATGAT GAATAAATATATATT TERM 2721 2192308 - 2192282 - R 90 -11.8 -2.91822 | overlap 2192275 2192281 TATAATAATGCAAAT TCATGCAGATTA AAA TAATCTACATGA TGAATAAATATATAT TERM 2722 2192651 - 2192625 - R 100 -12.4 -4.99035 | opp_overlap 2192630, overlap 2192645 CTATGCACACAAAAA TACCACGGTTGT TTT ATAACCGTGGTA TCACATCAGAAAATT Sca_2166 2194311 - 2192665 - | putative indole-3-pyruvate decarboxylase TERM 2723 2193548 - 2193562 + g 71 -4.2 -4.78572 | opp_overlap 2193548 GAACCATCATAAATA CCCATA TAA TAAGGG TTTTCTTCATTAAAA TERM 2724 2194488 - 2194448 - R 81 -4.6 -5.4505 | TCTCTCAATAAAAAA CCCTATCTTGCTTTCGCT TTTTT AGCATCTGCATGATAGGG ATAAAATCTATTATT Sca_2167 2194956 - 2194507 - | putative regulatory protein Sca_2168 2195866 - 2195600 - | hypothetical protein TERM 2725 2196293 - 2196281 - g 73 -5.5 -4.6902 | GCAGAAGCTGAAAAA GCACA AAC TGCGC CAACCAAAAACGAAA TERM 2726 2196605 - 2196593 - g 71 -4.8 -4.67353 | GCAGTCATTGAAAAA GCTG AACAA CAGC CTAAAGACCTCTCTG Sca_2169 2195966 - 2197102 + | hypothetical protein TERM 2727 2197156 - 2197107 - T 100 -11.6 -4.2123 | opp_overlap 2197108 2197111, overlap 2197108 TATTTATCTAAGAAA TCGTTGAACCCCCTTATTGCAT AAATTG ATGCAATAAGGGGGTTCATTAT TTTTAGTATACAGTT TERM 2728 2197108 - 2197155 + T 100 -15.1 -4.80882 | opp_overlap 2197107 2197108, overlap 2197111 ATTTATCTAAGAAAT CGTTGAACCCCCTTATTGCAT AAATTG ATGCAATAAGGGGGTTCATTA TTTTTAGTATACAGT TERM 2729 2197155 - 2197108 - T 100 -15.1 -3.12256 | opp_overlap 2197108 2197111, overlap 2197107 ATTTATCTAAGAAAT CGTTGAACCCCCTTATTGCAT AAATTG ATGCAATAAGGGGGTTCATTA TTTTTAGTATACAGT TERM 2730 2197111 - 2197152 + T 100 -23.4 -4.50988 | opp_overlap 2197108 2197107, overlap 2197108 TATCTAAGAAATCGT TGAACCCCCTTATTGCAT AAATTG ATGCAATAAGGGGGTTCA TTATTTTTAGTATAC Sca_2170 2198130 - 2197207 - | hypothetical protein Sca_2171 2198279 - 2198839 + | hypothetical protein Sca_2172 2199106 - 2199219 + | hypothetical protein TERM 2731 2199241 - 2199214 - T 100 -10 -5.5353 | GACAGCAATAAAAAA GACTAGCTATGC TGCC ACATAACTAGTC CATCTACTTTATTCG Sca_2173 2200566 - 2199406 - | putative monooxygenase TERM 2732 2199501 - 2199519 + g 73 -6.8 -4.19577 | CTTCTCTAAAGAATG TTTCAAGA TTT TCTTGAGA TTCTTTTGCGCGTTC Sca_2174 2201187 - 2200603 - | hypothetical protein TERM 2733 2201203 - 2201261 + r 72 -8.6 -3.02385 | gap 1, opp_overlap 2201234 2201237 2201238 2201241 2201245 2201254, overlap 2201215 2201238 2201243 2201254 ATTTAATTCCTTCTT TCGTTTTCTTTATTTCGATATATCG AAATTATAAG CGATATATCGAAAT-AAGTCAACGA TATATCGTTACCTTT TERM 2734 2201331 - 2201298 - R 85 -3.9 -5.69379 | opp_overlap 2201299 2201323, overlap 2201299 ATATAATTAAAAAAA GCTGTCAAACCCTTT TATA ATAAGGTTTAACAGT TTAAATTCATATATT TERM 2735 2201330 - 2201299 - R 74 -7.4 -3.99187 | opp_overlap 2201299 2201323, overlap 2201298 TATAATTAAAAAAAG CTGTCAAACCCTTT TATA ATAAGGTTTAACAG TTTAAATTCATATAT Sca_2175 2202310 - 2201345 - | putative fructokinase Sca_2176 2202999 - 2202382 - | putative transcriptional regulator TERM 2736 2204169 - 2204187 + G 72 -8.2 -3.50302 | overlap 2204165 2204172 GACATGGACAGGCAT GAAGATTG TAC CAGTCTTC TTCCTATTATTGTTC Sca_2177 2203165 - 2204451 + | hypothetical protein, similar to phage infection protein precursor TERM 2737 2204504 - 2204476 - T 100 -13.3 -3.84451 | opp_overlap 2204476 TTGGGGAAATTGAAA CCACCATCAAGTT GGG AAATTGATGGTGG TTTTTTTATGAGACT TERM 2738 2204476 - 2204504 + T 100 -13.3 -5.61596 | opp_overlap 2204476 TTGGGGAAATTGAAA CCACCATCAAGTT GGG AAATTGATGGTGG TTTTTTTATGAGACT Sca_2178 2207599 - 2204558 - | truncated putative teichoic acid biosythesis protein TERM 2739 2204591 - 2204617 + g 74 -4.6 -5.02476 | opp_overlap 2204613 GAATTCTTCATTTGA TTTGATTTTAAG AGG TTCAAAATCAAA TTTTTTGAGAGGTGT Sca_2179 2208273 - 2207638 - | truncated UDP-glucose pyrophosphorylase Sca_2180 2208493 - 2208305 - | truncated UTP--glucose-1-phosphate uridylyltransferase TERM 2740 2210401 - 2210391 - g 75 -5.4 -4.7889 | AGAAATACTCAAAAA CTTG GAA CAAG TCAATGAGAATGTAC Sca_2181 2208982 - 2211483 + | hypothetical protein TERM 2741 2211492 - 2211525 + T 100 -15.5 -5.06414 | opp_overlap 2211492 AAATTAAACAAAAAA GTGTCGTGAAACATA GAAT TAAGTTTCACGACAC TTTTTATTAGGAAAA TERM 2742 2211525 - 2211492 - T 100 -15.5 -5.74086 | opp_overlap 2211492 AAATTAAACAAAAAA GTGTCGTGAAACATA GAAT TAAGTTTCACGACAC TTTTTATTAGGAAAA Sca_2182 2212628 - 2211543 - | hypothetical protein TERM 2743 2213864 - 2213844 - g 74 -7.7 -4.00124 | TATTTTACAATGAAA TCTTTTAGC TTA GCTAAAAAA ATTAACATCATTCCA Sca_2183 2213268 - 2214356 + | truncated protein similar to glycosyl/glycerophosphate transferases (fragment 1) TERM 2744 2214754 - 2214734 - g 82 -7.7 -4.41353 | opp_overlap 2214739, overlap 2214739 TTATATATATCAAAA GAAAACATT ACA AATGTCTTC GATAACTTGGTCATA TERM 2745 2214749 - 2214739 - g 74 -4 -5.16132 | opp_overlap 2214739, overlap 2214734 TATATCAAAAGAAAA CATT ACA AATG TCTTCGATAACTTGG TERM 2746 2214845 - 2214835 - g 78 -4 -5.38497 | overlap 2214837 ATTTAAATTAAAAAA TTTC CGA GAAA AACCTATTATCGGAC Sca_2184 2214365 - 2216611 + | truncated protein similar to glycosyl/glycerophosphate transferases (fragment 2) TERM 2747 2216730 - 2216700 - T 100 -12.7 -2.85351 | opp_overlap 2216700, overlap 2216702 GTCTCTCACATTATA GAGGTTAAGCAGC ATTTA GCTGCTTAATCTC TTTTTGTATTTGCGG TERM 2748 2216700 - 2216730 + T 100 -14.9 -5.19879 | opp_overlap 2216700 2216702 GTCTCTCACATTATA GAGGTTAAGCAGC ATTTA GCTGCTTAATCTC TTTTTGTATTTGCGG TERM 2749 2216728 - 2216702 - T 75 -9.5 -2.97747 | opp_overlap 2216700, overlap 2216700 CTCTCACATTATAGA GGTTAAGCAGC ATTTA GCTGCTTAATC TCTTTTTGTATTTGC Sca_2185 2218244 - 2217150 - | hypothetical protein TERM 2750 2218450 - 2218413 - R 95 -7.3 -5.9667 | opp_overlap 2218413 AAAAATATAAAAAAA CAGTTCTGATATT TATTTGAAGAGT AATATCAGAACTG TTTAAAAATGTAATT TERM 2751 2218413 - 2218450 + r 81 -9.5 -3.60006 | gap 1, opp_overlap 2218413 AAAAATATAAAAAAA CAGTTCTGATATTTATTT GAA GAGTAA-TATCAGAACTG TTTAAAAATGTAATT Sca_2186 2219465 - 2218521 - | hypothetical protein Sca_2187 2220538 - 2219795 - | hypothetical protein TERM 2752 2220399 - 2220412 + g 74 -2.5 -5.28176 | opp_overlap 2220399 GCATTCTTAACGTAA TATTT TCCA AAATA TTTTTTGTGAATAGC TERM 2753 2220962 - 2220983 + r 74 -8.7 -3.23869 | opp_overlap 2220962, overlap 2220960 CATTAAAAAGAAAAA TCGCACCCT AATT AGAGTGCGA TCTTGTCAAATAGTC TERM 2754 2220983 - 2220962 - R 100 -10.9 -5.65496 | opp_overlap 2220962 2220960 CATTAAAAAGAAAAA TCGCACCCT AATT AGAGTGCGA TCTTGTCAAATAGTC Sca_2188 2221740 - 2221000 - | hypothetical protein TERM 2755 2222026 - 2221999 - R 93 -11.4 -3.64703 | opp_overlap 2221999 TCTCCGCTACTTAAA GCTTCGATTCAA AATT TTGAGTCGAAGC TTTTTTGTTGCGATT TERM 2756 2221999 - 2222026 + r 100 -13.6 -5.4756 | opp_overlap 2221999 TCTCCGCTACTTAAA GCTTCGATTCAA AATT TTGAGTCGAAGC TTTTTTGTTGCGATT TERM 2757 2222093 - 2222065 - R 95 -6.8 -5.80248 | CAACATACAAAAAAA CAGACACTCCTA TATTT TAGAAATGCCTG TTTATTCTCTCACTT Sca_2189 2222953 - 2222108 - | hypothetical protein, similar to lactococcal lipoprotein TERM 2758 2222764 - 2222795 + g 70 -8.2 -3.42274 | gap 1 GCGCCTTGTTCGGTA CGTTGTAATCAGAGA ACT TCT-TGATTTCAACG TTGATTCCATCTTTT Sca_2190 2223636 - 2222977 - | putative ABC transporter permease protein Sca_2191 2224654 - 2223638 - | putative ABC transporter ATP-binding protein TERM 2759 2224758 - 2224729 - R 88 -5.7 -5.61881 | gap 1, opp_overlap 2224729 TTTGAAAAATAAAAA TTCCGGGGACAATG AAA CAA-GTCCTCGGAA TAATATATCGGCTCG TERM 2760 2225483 - 2225460 - R 100 -8.9 -5.67063 | opp_overlap 2225463 2225464 TTCATCATAAAAAAA GAACCAGGC ATTAAA GCCTGATTC TCAAAATTAAAACAT Sca_1292a 2238240 - 2225509 - | putative glycine-rich cell wall surface anchor protein TERM 2761 2228538 - 2228549 + g 74 -3.6 -5.13521 | ATGTTACTTTTGTAT CGCC TTCT GGTG TTTTTTCAGTACTTT TERM 2762 2228658 - 2228669 + g 74 -3.6 -5.10497 | AGGTTACTTTTGTAT CGCC TTCC GGTG TTTTTTCAGTGCCTT TERM 2763 2229294 - 2229305 + g 74 -3.6 -5.13521 | AGGTTACTTTTGTAT CGCC TTCC GGTG TTTTTTCAGTGCTTT TERM 2764 2229966 - 2229977 + g 74 -3.6 -5.13521 | opp_overlap 2229952 ACGTTACTTTTGTAT CGCC TTCC GGTG TTTTTTCAGTACTTT TERM 2765 2231165 - 2231213 + g 72 -7.7 -3.68325 | TCGCCTGCTTCACCT TTGTCTCCTTTAGAGATAATT GCTTGTG AATTATCGCTGAAGTGGACAA TTGTATTACCATCTG TERM 2766 2236104 - 2236124 + g 78 -11.2 -2.64679 | overlap 2236103 2236101 2236106 CATCTCTGCCATCTA GACCAGCT CTACC AGCTGGTC CTGTTTCACCTTGGT TERM 2767 2238272 - 2238295 + H 74 -8.4 -3.67297 | CTAAGTTGTACCACG TTACTTTATT TTAA AATAAAGTAA TTATCTATATATAAT TERM 2768 2238533 - 2238508 - H 90 -7.6 -5.0925 | opp_overlap 2238508 TCTTAAAAGCAAAAA GCACACCGAC TTCTAT ATCAGTGTGC TTCATTTGACGGAGA Sca_2193 2238766 - 2239791 + | hypothetical protein TERM 2769 2239798 - 2239841 + T 78 -10.4 -2.66106 | opp_overlap 2239803, overlap 2239803 CTCAATTAAATCATT AAAAAGGCTCGAGTCTTCAC CAAC GCAAAGATTCGAGCCTTTTC TGCATTATTCAAATA TERM 2770 2239803 - 2239836 + T 100 -10.3 -4.50943 | opp_overlap 2239803, overlap 2239798 TTAAATCATTAAAAA GGCTCGAGTCTTCAC CAAC GCAAAGATTCGAGCC TTTTCTGCATTATTC TERM 2771 2239836 - 2239803 - T 100 -12.5 -4.84363 | opp_overlap 2239803 2239798 TTAAATCATTAAAAA GGCTCGAGTCTTCAC CAAC GCAAAGATTCGAGCC TTTTCTGCATTATTC Sca_2194 2241198 - 2239846 - | hypothetical protein Sca_2195 2241841 - 2241191 - | hypothetical protein Sca_2196 2242714 - 2241965 - | hypothetical protein Sca_2197 2245121 - 2242731 - | putative preprotein translocase subunit SecA Sca_2198 2245620 - 2245123 - | hypothetical protein TERM 2772 2245157 - 2245185 + g 86 -6.7 -5.19328 | opp_overlap 2245157 CGAAGTGCTTCTAAA GTATCGGCAGGAT GAG ATGCTGCTGCTAC TTTTTCTTCTGGAAT Sca_2199 2247158 - 2245626 - | hypothetical protein TERM 2773 2246612 - 2246627 + g 76 -4.7 -5.05606 | CAATTTCAAATTCCG GCCAA ATATCA TTGGC TTTATTTTTATTGGC Sca_2200 2248698 - 2247148 - | hypothetical protein Sca_2201 2249925 - 2248813 - | putative preprotein translocase secY subunit TERM 2774 2249966 - 2249950 - R 76 -5.1 -5.08824 | CTTTTATTTAAAAAA TTAAGGC AAG GCCCCAA CACAGCATTATCGTG Sca_2202 2256845 - 2250006 - | truncated protein, similar to cell wall surface anchor family protein (fragment 3) TERM 2775 2251224 - 2251238 + g 71 -5 -4.58663 | opp_overlap 2251222, overlap 2251222 AGAGTTCGAATTACT GATTTG GTT CAGATC TTTTTCCAAAGTACT TERM 2776 2251814 - 2251828 + g 71 -8.6 -3.1506 | overlap 2251805 ATTCAGCATTGCTGA GTGATG TTT CATCAC TTAATGACAAGCTTT Sca_2202a 2260339 - 2256842 - | truncated protein, similar to cell wall surface anchor family protein (fragment 2) TERM 2777 2257593 - 2257608 + g 76 -6.2 -4.65263 | opp_overlap 2257592 CTTGTCGAACCAGAT GTACTT AAAG AAGTAC TTTCTTTTACAGAAT Sca_2207 2261068 - 2260340 - | truncated protein, similar to cell wall surface anchor family protein (fragment 1) TERM 2778 2261363 - 2261325 - R 95 -7.7 -5.54079 | opp_overlap 2261327 CCAAAAACTAAAAAA TACAGACTGAAACAC ACTTTTTAA ATGTTTCAATCTGTA CTTAAATTCACTTAA Sca_2208 2262682 - 2261375 - | putative anaerobic C4-dicarboxylate membrane transporter TERM 2779 2262431 - 2262409 - G 71 -4.2 -4.82901 | opp_overlap 2262400 2262413, overlap 2262413 TCGGTGCGATAAAAA TAATCGTTTT AGG AAAACGTTCA ATTATTTTTGAAGCA Sca_2209 2263020 - 2263217 + | hypothetical protein TERM 2780 2263328 - 2263278 - T 72 -4.4 -5.0133 | gap 3, opp_overlap 2263291, overlap 2263284 2263291 CATCTTTTCAAAAAA TATACAGTAA-AAACGGCCAAG-GA TACT TCTCTCGGCCGTTTATTACT-TAAA ACTTCATTTTTATAA TERM 2781 2263323 - 2263284 - T 83 -10.3 -3.39995 | gap 2, opp_overlap 2263291, overlap 2263278 2263291 TTCAAAAAATATACA GTAA-AAACGGCCAAG-GA TACT TCTCTCGGCCGTTTATTAC TTAAAACTTCATTTT TERM 2782 2263315 - 2263291 - T 93 -8.6 -4.87037 | gap 1, opp_overlap 2263291, overlap 2263284 2263278 AATATACAGTAAAAA CGGCCAAG-GA TACT TCTCTCGGCCG TTTATTACTTAAAAC TERM 2783 2263291 - 2263315 + T 72 -6.4 -4.3255 | gap 1, opp_overlap 2263284 2263278 2263291 AATATACAGTAAAAA CGGCCAAG-GA TACT TCTCTCGGCCG TTTATTACTTAAAAC katE/B 2265396 - 2263384 - | putative catalase TERM 2784 2263810 - 2263827 + g 74 -2.7 -5.28826 | overlap 2263812 ACGGTCGTATTTTTC CATAGTC AATT GACTATC TTTTTTATCAGATTT TERM 2785 2265323 - 2265334 + g 76 -4.4 -5.14645 | TTTGTAGTCATCGGT TGGT CTTT ACCA TTTTTCTTAAATTGT TERM 2786 2265571 - 2265553 - R 100 -11 -5.52347 | AAGAAAATTAAAAAA GACCCAGC TAG ACTGGGTC GACATTCTAAATATC Sca_2211 2266413 - 2265625 - | hypothetical protein TERM 2787 2266280 - 2266264 - G 74 -3.7 -5.08255 | ATTTTTAAAACAAAA CTTAAGA AAA TCATAAG CGTAATCTAATGGTA TERM 2788 2266612 - 2266585 - H 100 -10.7 -5.45652 | ATTTGTAATAAAAAA GAGGATACTAG TTGCCT CTAGCATCCTC TGAGTAAAGGCTCAC TERM 2789 2266663 - 2266698 + H 100 -8.5 -5.67063 | opp_overlap 2266651, overlap 2266666 AAACGAACCTTTTGG TTGGCTGATTAAGTT CTAGGA AACTTAATCAGCTTA TTTTTTTGTCATGCG TERM 2790 2266666 - 2266695 + H 100 -12.4 -4.9041 | overlap 2266663 CGAACCTTTTGGTTG GCTGATTAAGTT CTAGGA AACTTAATCAGC TTATTTTTTTGTCAT TERM 2791 2267027 - 2267000 - H 100 -13.6 -5.07486 | opp_overlap 2267005 2267007 TACTTGTAATAAAAA GAGGATACTAGC TGTA ACTAGTATCCTC TGAGTAAAGGCTCAC TERM 2792 2267078 - 2267113 + H 100 -8.5 -5.67063 | opp_overlap 2267066, overlap 2267081 AAACGAACCTTTTGG TTGGCTGATTAAGTT CTAGGA AACTTAATCAGCTTA TTTTTTTGTCATGCG TERM 2793 2267081 - 2267110 + H 100 -12.4 -4.9041 | overlap 2267078 CGAACCTTTTGGTTG GCTGATTAAGTT CTAGGA AACTTAATCAGC TTATTTTTTTGTCAT TERM 2794 2267396 - 2267433 + H 100 -12.9 -5.38326 | opp_overlap 2267401, overlap 2267401 GATCATACAATTCGG GAAAACTCATCAAGTTC TTTA GTACTTGGTGGGTTTTC TTTTTCTTTACTTAA TERM 2795 2267401 - 2267428 + H 89 -7 -5.48028 | opp_overlap 2267401, overlap 2267396 TACAATTCGGGAAAA CTCATCAAGTTC TTTA GTACTTGGTGGG TTTTCTTTTTCTTTA tatA 2267595 - 2267816 + | putative sec-independent protein translocase tatC 2267881 - 2268594 + | putative sec-independant protein translocase TERM 2796 2268594 - 2268644 + T 100 -10.7 -4.19947 | gap 1, opp_overlap 2268597 2268601, overlap 2268596 2268597 2268601 ATTTCCTGAACATTA AAACAAACACCCGTCTTACAC-AT CTAA ATCGTGTAAAACGGGTGTTTGCTG TTTATAATTGTTTTC TERM 2797 2268596 - 2268642 + T 100 -13.3 -3.66867 | gap 1, opp_overlap 2268597 2268601, overlap 2268594 2268597 2268601 TTCCTGAACATTAAA ACAAACACCCGTCTTACAC-AT CTAA ATCGTGTAAAACGGGTGTTTGC TGTTTATAATTGTTT TERM 2798 2268641 - 2268597 - T 100 -19 -4.4261 | gap 1, opp_overlap 2268597 2268596 2268594 2268601, overlap 2268601 TCCTGAACATTAAAA CAAACACCCGTCTTACAC-AT CTAA ATCGTGTAAAACGGGTGTTTG CTGTTTATAATTGTT TERM 2799 2268597 - 2268641 + T 100 -16.8 -2.78494 | gap 1, opp_overlap 2268597 2268601, overlap 2268596 2268594 2268601 TCCTGAACATTAAAA CAAACACCCGTCTTACAC-AT CTAA ATCGTGTAAAACGGGTGTTTG CTGTTTATAATTGTT TERM 2800 2268601 - 2268637 + T 100 -11.8 -4.05181 | gap 1, opp_overlap 2268597 2268601, overlap 2268597 2268596 2268594 GAACATTAAAACAAA CACCCGTCTTACAC-AT CTAA ATCGTGTAAAACGGGTG TTTGCTGTTTATAAT TERM 2801 2268637 - 2268601 - T 100 -14 -4.77698 | gap 1, opp_overlap 2268601 2268597 2268596 2268594, overlap 2268597 GAACATTAAAACAAA CACCCGTCTTACAC-AT CTAA ATCGTGTAAAACGGGTG TTTGCTGTTTATAAT Sca_2213 2270373 - 2268646 - | hypothetical protein TERM 2802 2269610 - 2269620 + g 70 -6.8 -4.07526 | ATAAATTTGCCTAAC GCTG CAT CAGC TTTGTCTAAATCATT Sca_2214 2271577 - 2270354 - | putative Tat-translocated protein Sca_2215 2272428 - 2271574 - | hypothetical protein TERM 2803 2272496 - 2272480 - R 72 -6.7 -4.05788 | opp_overlap 2272480 2272475 TCTTTGCAAATGAAA TTGATAA TCG TTATCAA TGTAATTATAAATTG TERM 2804 2272729 - 2272682 - R 77 -7.3 -4.24397 | gap 2, opp_overlap 2272685, overlap 2272685 ATAATGGAATATAAA TA-AGCACCC-AAAAGCTGAACC GTTA GTTCCAACTTTTTGGGTGCTATA TCATTTCAGAAGTTA TERM 2805 2272725 - 2272685 - R 95 -10.6 -4.22375 | gap 1, opp_overlap 2272685, overlap 2272682 ATGGAATATAAATAA GCACCC-AAAAGCTGAACC GTTA GTTCCAACTTTTTGGGTGC TATATCATTTCAGAA Sca_2216 2274275 - 2272821 - | hypothetical protein TERM 2806 2274424 - 2274445 + r 83 -10.2 -3.34414 | opp_overlap 2274424, overlap 2274417 GCTTTACATAAAAAA GACAGACG CCCTCA CGTCTGTC TTAATCATATTTTTA TERM 2807 2274445 - 2274424 - R 100 -10.9 -5.36441 | opp_overlap 2274424 2274417 GCTTTACATAAAAAA GACAGACGC CCTC ACGTCTGTC TTAATCATATTTTTA Sca_2217 2276071 - 2274458 - | putative glutamate synthase (ferredoxin) TERM 2808 2276185 - 2276173 - H 72 -4.9 -4.91511 | opp_overlap 2276173 ATTGTACGATAAAAA TGAAA GCG TTTCA TCCTTGAATGTCGAT Sca_2218 2276482 - 2277186 + | putative short chain dehydrogenase TERM 2809 2277285 - 2277228 - T 70 -4 -4.90455 | opp_overlap 2277228, overlap 2277238 ATATAGCCACAAAAA GCCGGAAGTACTTCAGGTTCTGAG GAATAAATAA CTCAGCTCCGTTTGTACTTCCGGC TTTCTTTTCCAAAAG Sca_2219 2277499 - 2277314 - | hypothetical protein TERM 2810 2277701 - 2277677 - g 71 -5 -4.63675 | opp_overlap 2277677 2277689 ATTAAAGGAAATAAA CTTCAACTGC TTGCT GCGATTGAAG CTTTCAATAAAGACT Sca_2220 2277641 - 2278780 + | hypothetical protein TERM 2811 2278820 - 2278786 - T 100 -12.3 -5.093 | opp_overlap 2278786 TCGAAAATAACAAAA GCACCCATCCTTC TCACCACTT GAAGGATAGGTGC TTCTTTATGTCTGAC TERM 2812 2278786 - 2278820 + T 91 -10.1 -4.18674 | opp_overlap 2278786 TCGAAAATAACAAAA GCACCCATCCTTC TCACCACTT GAAGGATAGGTGC TTCTTTATGTCTGAC Sca_2221 2279383 - 2278838 - | hypothetical protein TERM 2813 2279192 - 2279208 + g 72 -3.7 -4.91852 | overlap 2279195 ATCCGGTAATCCCGC TAACCAA ACT TTGGCTA TTTCTTTTTGGTAAG Sca_2222 2280566 - 2279571 - | hypothetical protein TERM 2814 2280737 - 2280696 - R 87 -8.3 -4.7173 | gap 1, opp_overlap 2280701, overlap 2280700 2280701 GAGCATATTTAAAAA GAAATCCTCTCATAACCTTA TTC CAAGATTATAAGAGG-TCTC TGCATCAAGCTATTG TERM 2815 2280734 - 2280700 - R 88 -8 -4.89966 | opp_overlap 2280701, overlap 2280696 2280701 ATATTTAAAAAGAAA TCCTCTCATAACCTTA TTC CAAGATTATAAGAGGT CTCTGCATCAAGCTA TERM 2816 2280733 - 2280701 - R 93 -11.5 -3.52353 | opp_overlap 2280701, overlap 2280700 2280696 TATTTAAAAAGAAAT CCTCTCATAACCTTA TTC CAAGATTATAAGAGG TCTCTGCATCAAGCT bioA 2282085 - 2280742 - | putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase bioD 2282767 - 2282093 - | putative dethiobiotin synthetase TERM 2817 2282586 - 2282599 + g 84 -4.5 -5.49569 | opp_overlap 2282586 GATGTTTCATCATAA GTGAG GCCG CTCGC TTTTTTATATTCCTC bioY 2283311 - 2282748 - | putative biotin synthase TERM 2818 2283382 - 2283354 - H 81 -9.1 -3.60971 | opp_overlap 2283354 2283360, overlap 2283360 ACTTCAATCCCTAAA TGTAAACTTTTAA TTT TTATAAGTTTACA TTTAGGAGGTGATGA TERM 2819 2283354 - 2283382 + H 81 -9.1 -3.56092 | opp_overlap 2283354 2283360, overlap 2283360 ACTTCAATCCCTAAA TGTAAACTTTTAA TTT TTATAAGTTTACA TTTAGGAGGTGATGA Sca_2226 2283570 - 2284598 + | hypothetical protein TERM 2820 2284717 - 2284685 - T 100 -12.1 -4.68593 | opp_overlap 2284685 TTCAGCATTTAAAAA GACGCCATAACGGTT TGA AATGGTTATGGCGTC TTTTTTATATCATTA TERM 2821 2284685 - 2284717 + T 100 -14.3 -5.42131 | opp_overlap 2284685 TTCAGCATTTAAAAA GACGCCATAACGGTT TGA AATGGTTATGGCGTC TTTTTTATATCATTA TERM 2822 2284811 - 2284786 - T 83 -7 -5.07053 | AACTAGTCTAAAAAA CTCTACTAAC CAAACT GTTAATAGAG CAAATTTTTTACTTC Sca_2227 2285500 - 2284820 - | putative transcriptional activator TenA TERM 2823 2285373 - 2285389 + g 74 -3.7 -5.1356 | TAAATATAGTCCTGC TTCAACC AAT GTTTGAA TTTTTCTTCATCCAA Sca_2228 2286384 - 2285530 - | hypothetical protein Sca_2229 2286922 - 2286419 - | hypothetical protein TERM 2824 2287032 - 2287009 - H 100 -11 -5.26875 | opp_overlap 2287008 TGCGGAATTAAAAAA GACAGCCTGC AATT GCAGACTGCC AATCTTAATTATTGA Sca_2230 2287748 - 2288020 + | hypothetical protein TERM 2825 2288069 - 2288018 - T 100 -12.8 -4.66347 | gap 2, opp_overlap 2288024, overlap 2288024 ATGAAAAAAGAGAAA TAATAATACCGACCCCTTAACGAC TACTCT GT-GTTAAGGGATCGGTATT-TTA ATTGGAAATCATATT TERM 2826 2288024 - 2288064 + T 100 -12.1 -4.41494 | gap 1, opp_overlap 2288018 2288024 AAAGAGAAATAATAA TACCGACCCCTTAACGAC TACTCT GT-GTTAAGGGATCGGTA TTTTAATTGGAAATC TERM 2827 2288064 - 2288024 - T 100 -14.3 -4.22749 | gap 1, opp_overlap 2288024, overlap 2288018 AAAGAGAAATAATAA TACCGACCCCTTAACGAC TACTCT GT-GTTAAGGGATCGGTA TTTTAATTGGAAATC Sca_2231 2289737 - 2288115 - | hypothetical protein TERM 2828 2290203 - 2290213 + G 78 -5.4 -4.91511 | overlap 2290196 GTCCACCATGTCGGC GACA ATA TGTC TTTTTATCATACGAT Sca_2232 2289906 - 2290484 + | putative DNA-binding protein TERM 2829 2290509 - 2290538 + T 100 -12.3 -3.65084 | opp_overlap 2290509, overlap 2290512 TTGTTGTCTAAAAAA TAATCAGCTGTGC CGGT GCACAACTGATTA TTTCAACATTTCATT TERM 2830 2290538 - 2290509 - T 100 -14.5 -5.00616 | opp_overlap 2290509 2290512 TTGTTGTCTAAAAAA TAATCAGCTGTGC CGGT GCACAACTGATTA TTTCAACATTTCATT TERM 2831 2290512 - 2290535 + T 90 -9.6 -3.95071 | opp_overlap 2290509, overlap 2290509 TTGTCTAAAAAATAA TCAGCTGTGC CGGT GCACAACTGA TTATTTCAACATTTC Sca_2233 2291258 - 2290557 - | putative short chain dehydrogenase Sca_2234 2291813 - 2291271 - | putative tetR family regulatory protein TERM 2832 2291641 - 2291629 - G 71 -4.9 -4.59511 | AACAGCTCGGAAAAA TCATT TTG AATGA GTTGATAGCACAATG Sca_2235 2292653 - 2291835 - | hypothetical protein TERM 2833 2292708 - 2292721 + H 71 -6.7 -3.97368 | opp_overlap 2292708, overlap 2292704 CTTTCCAATCATAAA CGGAT AACT ATCCG TTTGTCAATTAAAAA TERM 2834 2292721 - 2292708 - H 72 -6.7 -4.05446 | opp_overlap 2292708 2292704 CTTTCCAATCATAAA CGGAT AACT ATCCG TTTGTCAATTAAAAA TERM 2835 2293002 - 2293017 + G 73 -3.2 -5.10154 | CAGTACTGGCAAATG GGCAAT TATC ATAGCC TTTTTAATTTTCGGT Sca_2236 2292901 - 2293659 + | hypothetical protein TERM 2836 2293752 - 2293787 + T 86 -9.1 -3.96148 | opp_overlap 2293756, overlap 2293756 TCAGATAGCGATTAG ACAAGGGCTAGAACA CTGATA TGTTCTAGCCCTTCC TTTGTGGTGCGGACA TERM 2837 2293756 - 2293783 + T 100 -14.3 -3.63228 | opp_overlap 2293756, overlap 2293752 ATAGCGATTAGACAA GGGCTAGAACA CTGATA TGTTCTAGCCC TTCCTTTGTGGTGCG TERM 2838 2293783 - 2293756 - T 100 -15 -3.55714 | opp_overlap 2293756 2293752 ATAGCGATTAGACAA GGGCTAGAACAC TGAT ATGTTCTAGCCC TTCCTTTGTGGTGCG TERM 2839 2294389 - 2294424 + T 75 -4.7 -5.03405 | opp_overlap 2294389 TTACACATAAGTAAA TCCTCCAGAACATTA TTCCAC TACAGTTCGGGAGGA TTTTTATATAATATT Sca_2237 2294820 - 2294722 - | truncated putative glycine betaine/choline-binding lipoprotein precursor (fragment 2) Sca_2238 2295652 - 2294981 - | truncated putative glycine betaine/choline-binding lipoprotein precursor (fragment 1) TERM 2840 2295781 - 2295754 - R 81 -4.9 -5.43414 | ATTAGACATAAAAAA GAAGCAGATAC CTTCTC GTACCTACCTC TCCTTCATCACAACC Sca_2239 2296422 - 2295775 - | putative serine/threonine protein phosphatase Sca_2240 2298142 - 2296427 - | putative ABC transporter, permease protein TERM 2841 2298209 - 2298167 - R 100 -12.8 -4.91473 | opp_overlap 2298163 CAATCTAAAAATAAA TGAGATGGCGACGCTTCATT TAA AATGAGTCACCGCCACCTCA GATACTATGTTTTTA Sca_2241 2299355 - 2298321 - | putative ABC transporter, substrate-binding protein Sca_2242 2300579 - 2299356 - | putative ABC transporter, ATP-binding protein TERM 2842 2301001 - 2300989 - g 82 -7.7 -4.40804 | overlap 2300973 TAGGAGGTTATAAAA CCTCT AAA AGAGG CGGTTTAAGAATCGG Sca_2243 2300730 - 2301599 + | putative transcriptional regulator, LysR family TERM 2843 2301720 - 2301772 + T 100 -16.6 -5.00339 | opp_overlap 2301720 GAAAATAAAATTAAA CAAGGCATGGACAGAAAGCATTTT AATTC AATATCATTTCTGTCCATGCCTTG TTTTTACTTATTAAT TERM 2844 2301772 - 2301720 - T 100 -17.3 -4.41486 | opp_overlap 2301720 GAAAATAAAATTAAA CAAGGCATGGACAGAAAGCATTTTA ATT CAATATCATTTCTGTCCATGCCTTG TTTTTACTTATTAAT Sca_2244 2302547 - 2301783 - | hypothetical protein TERM 2845 2302898 - 2302915 + G 81 -5.6 -5.12617 | GCAGGAAATTCAGAT GAAAGC CTAGTT GCTTTC TTTTTTAAGTCATTA Sca_2245 2302754 - 2303149 + | hypothetical protein Sca_2246 2303158 - 2303328 + | hypothetical protein Sca_2247 2303656 - 2303501 - | hypothetical protein TERM 2846 2304202 - 2304232 + H 90 -7.7 -5.33866 | ACAATATGTCATTAG TAAGTGCTGATCT ATTTC AGGTCAGTGCTTA TTTTTTATCCCTTTA TERM 2847 2304479 - 2304509 + H 85 -5.5 -5.36965 | opp_overlap 2304479 2304482 ACAATATGCCATGAA TGAGTGCTGATCT ATTTC AAATCAGCGCTTA TTTTTTGTACTATTA TERM 2848 2304638 - 2304656 + H 100 -9.6 -5.15969 | opp_overlap 2304638 TGTATTATTCACATA GCAACCAT TTC GTGGTTGC TTTTTTAAGTTCCCA TERM 2849 2304656 - 2304638 - H 72 -8.9 -2.92463 | opp_overlap 2304638 TGTATTATTCACATA GCAACCA TTTCG TGGTTGC TTTTTTAAGTTCCCA Sca_2248 2304722 - 2305585 + | putative lipoprotein precursor TERM 2850 2305588 - 2305641 + T 82 -7.7 -4.46212 | gap 1, opp_overlap 2305598, overlap 2305591 2305598 AAAGAAAAAATAATT CAGTA-AAAAACAGCCTAGCAGCG CGTTTAA CGTTGCTAGGCTGTTCTTATATTA TTTTCTAATCAAAGC TERM 2851 2305591 - 2305638 + T 100 -11.6 -4.35042 | gap 1, opp_overlap 2305598, overlap 2305588 2305598 GAAAAAATAATTCAG TA-AAAAACAGCCTAGCAGCG CGTTTAA CGTTGCTAGGCTGTTCTTATA TTATTTTCTAATCAA TERM 2852 2305598 - 2305630 + T 100 -15.7 -4.07533 | opp_overlap 2305598, overlap 2305591 2305588 TAATTCAGTAAAAAA CAGCCTAGCAGCG CGTTTAA CGTTGCTAGGCTG TTCTTATATTATTTT TERM 2853 2305630 - 2305598 - T 100 -14.2 -5.18357 | opp_overlap 2305598 2305591 2305588 TAATTCAGTAAAAAA CAGCCTAGCAGCGC GTTTA ACGTTGCTAGGCTG TTCTTATATTATTTT Sca_2249 2306400 - 2305639 - | hypothetical protein Sca_2250 2307512 - 2306451 - | hypothetical protein TERM 2854 2308345 - 2308361 + G 78 -10.9 -2.73124 | opp_overlap 2308343 2308340, overlap 2308344 GGCGAAAGAATCAGG CGTTCCA GTA TGGAACG GTTTAACAGATGAAG argF 2307980 - 2308984 + | putative ornithine carbamoyltransferase arcC 2309000 - 2309932 + | carbamate kinase Sca_2253 2310511 - 2312106 + | hypothetical protein TERM 2855 2312163 - 2312119 - f 74 -2.3 -5.5074 | gap 1, opp_overlap 2312123, overlap 2312123 TAATTCAATAAAAAA CAAACCGATTATCAACAGTT GTGGTG AGCTG-TGATTATCGGTTTT TCTTTATTATAAGTG TERM 2856 2312159 - 2312123 - f 71 -3.1 -5.20735 | gap 1, opp_overlap 2312123, overlap 2312119 TCAATAAAAAACAAA CCGATTATCAACAGTT GTGGTG AGCTG-TGATTATCGG TTTTTCTTTATTATA TERM 2857 2312123 - 2312159 + F 86 -5.3 -5.50774 | gap 1, opp_overlap 2312123 2312119 TCAATAAAAAACAAA CCGATTATCAACAGTT GTGGTG AGCTGT-GATTATCGG TTTTTCTTTATTATA TERM 2858 2312228 - 2312207 - f 100 -13.1 -3.83026 | opp_overlap 2312200 2312207 2312210, overlap 2312210 TTGTTTCACATTAAA TAAGAGGGC CTCC GCCCTCTTA TTCTGTCTTTTACTT TERM 2859 2312207 - 2312228 + F 100 -13.1 -3.85888 | opp_overlap 2312207 2312210, overlap 2312200 2312210 TTGTTTCACATTAAA TAAGAGGGC CTCC GCCCTCTTA TTCTGTCTTTTACTT TERM 2860 2312210 - 2312225 + F 93 -10.4 -4.02733 | opp_overlap 2312207 2312210, overlap 2312207 2312200 TTTCACATTAAATAA GAGGGC CTCC GCCCTC TTATTCTGTCTTTTA TERM 2861 2312225 - 2312210 - f 95 -10.4 -4.04806 | opp_overlap 2312210 2312207 2312200, overlap 2312207 TTTCACATTAAATAA GAGGGC CTCC GCCCTC TTATTCTGTCTTTTA TERM 2862 2313422 - 2313441 + F 100 -10.8 -5.4251 | opp_overlap 2313418 ATGAAAATTCATGGA CTACTCCA ACTT TGGAGTAG TTTTTTGTCTATAAA Sca_2254 2313759 - 2314637 + | hypothetical protein TERM 2863 2314683 - 2314647 - T 87 -8.2 -4.81249 | gap 1, opp_overlap 2314647 2314645 2314650 2314654, overlap 2314650 CTTTAAATTGAAAAA GAGGAAAGCCACTTC GAAATTGA GAAGCGGCTTTC-TC TATTTTATTAAAACG TERM 2864 2314650 - 2314681 + T 77 -8.8 -3.55261 | opp_overlap 2314647 2314650, overlap 2314647 2314645 2314654 TAAATTGAAAAAGAG GAAAGCCACTTC GAAATTGA GAAGCGGCTTTC TCTATTTTATTAAAA TERM 2865 2314681 - 2314650 - T 83 -11 -3.00199 | opp_overlap 2314650 2314647 2314645 2314654, overlap 2314647 TAAATTGAAAAAGAG GAAAGCCACTTC GAAATTGA GAAGCGGCTTTC TCTATTTTATTAAAA Sca_2255 2316311 - 2314746 - | hypothetical protein arcC 2317348 - 2316416 - | carbamate kinase argF 2318386 - 2317385 - | ornithine carbamoyltransferase TERM 2866 2319447 - 2319469 + G 72 -9.2 -2.71783 | opp_overlap 2319451 2319453, overlap 2319446 AATTTTGACTACTAT GCAAGATAAC TTT GTTATCTCGC CTTGGTTACTTTTAA nhaC 2318707 - 2320200 + | Na+/H+ antiporter NhaC TERM 2867 2320274 - 2320305 + F 95 -10.3 -4.33281 | gap 1, opp_overlap 2320276, overlap 2320298 TTTTCCAACTTTATA GAGCCTT-GCACTG ATTTA CAGTGTGAAGGCTC TTCTTTATTTAAAGT acsA 2320571 - 2322160 + | acetate-CoA ligase TERM 2868 2322188 - 2322220 + T 95 -8.4 -5.42131 | opp_overlap 2322189, overlap 2322189 TTATAGATTGTATAA AGGAAGCCCTGGCA AATTA TGCTAAGGCTTCCC TTTTTTATCTGATTC TERM 2869 2322219 - 2322189 - T 100 -11.9 -3.91858 | opp_overlap 2322189 2322188 TATAGATTGTATAAA GGAAGCCCTGGCA AATTA TGCTAAGGCTTCC CTTTTTTATCTGATT TERM 2870 2322189 - 2322219 + T 95 -11.9 -3.83652 | opp_overlap 2322189, overlap 2322188 TATAGATTGTATAAA GGAAGCCCTGGCA AATTA TGCTAAGGCTTCC CTTTTTTATCTGATT TERM 2871 2322332 - 2322287 - T 100 -13.6 -5.09685 | gap 1, opp_overlap 2322289, overlap 2322289 TAATATATACAAAAA TACCCAGTTCACGAATATCGA ATCTA TCGATAT-CATGAACTGGGTT ATTAATTATGAATGC TERM 2872 2322289 - 2322330 + T 100 -14 -3.86312 | gap 1, opp_overlap 2322287 2322289 ATATATACAAAAATA CCCAGTTCACGAATATCGA ATCTA TCGATAT-CATGAACTGGG TTATTAATTATGAAT TERM 2873 2322330 - 2322289 - T 100 -16.2 -4.15325 | gap 1, opp_overlap 2322289, overlap 2322287 ATATATACAAAAATA CCCAGTTCACGAATATCGA ATCTA TCGATAT-CATGAACTGGG TTATTAATTATGAAT putP 2323885 - 2322338 - | high affinity proline permease TERM 2874 2322873 - 2322853 - G 70 -8.3 -3.37071 | AAATCGTACTCATAA TTGCGGCTA AAA TAGCTGCAA GCAAGAATCCGCCAA TERM 2875 2324604 - 2324583 - R 71 -5.9 -4.4634 | opp_overlap 2324582 2324585 AACTCCAATAATAAA GACCATC ACTCCATA GATGGTC AATTTAATAATGATT Sca_2261 2325361 - 2324603 - | hypothetical protein TERM 2876 2325628 - 2325584 - R 70 -3.8 -5.02074 | gap 1, opp_overlap 2325593 2325596, overlap 2325593 TCATCGTCTAAAAAA GCTTA-AAAAGAAGACTGGAT AACA ATCCAATCTTCTTCAGTAACC TTCTTAAATATTTTA TERM 2877 2325593 - 2325618 + r 76 -9.1 -3.08738 | opp_overlap 2325584 2325593, overlap 2325596 AAAAAAGCTTAAAAA GAAGACTGGAT AACA ATCCAATCTTC TTCAGTAACCTTCTT TERM 2878 2325618 - 2325593 - R 100 -11.3 -4.77925 | opp_overlap 2325593 2325596, overlap 2325584 AAAAAAGCTTAAAAA GAAGACTGGAT AACA ATCCAATCTTC TTCAGTAACCTTCTT Sca_2262 2326465 - 2325641 - | hypothetical protein TERM 2879 2325975 - 2325988 + g 74 -3.9 -5.09245 | opp_overlap 2325975 AAATGACTATATACA TCTTT GTTT AAAGA TTTTTCTGCTTTTGC TERM 2880 2326579 - 2326556 - R 91 -9 -4.80729 | opp_overlap 2326555 AAAGATAATATAAAA TCCTCAACAA TTGT TTATTGAGGA CCATTTTCTTTATTA TERM 2881 2326667 - 2326628 - R 81 -10.4 -3.20345 | opp_overlap 2326627 2326631, overlap 2326631 AACTCTACATTAACA CAATATTCTAACAATTTA TATG TAACTTGTTAAAATATTG CCTTGTTAAAATATT TERM 2882 2326783 - 2326812 + r 79 -5.7 -5.10665 | opp_overlap 2326782 2326783 2326785 AGAAACACACCAAAC GAGAGTGAACTTA TTAC TGAGCTCACCCTC TTTTATTTATTGGAT Sca_2263 2327783 - 2326830 - | truncated putative metal-dependent amidase/aminoacylase/carboxypeptidase (fragment 2) Sca_2264 2327983 - 2327768 - | truncated putative metal-dependent amidase/aminoacylase/carboxypeptidase (fragment 1) TERM 2883 2328096 - 2328079 - R 72 -7.7 -3.57106 | TCTAAGGTAAATGAA TCGGTCC TCCT GGACCAA CTGGAATACCAAGCA Sca_2265 2329585 - 2328065 - | putative aminobenzoyl-glutamate transport protein TERM 2884 2329883 - 2329856 - R 100 -10.7 -5.53079 | opp_overlap 2329856 AAAAGACAGAAAAAA GGCAGAAACCT CAAATT AGATTTCTGCC TTTACAACTTCTATT TERM 2885 2329856 - 2329883 + r 74 -8.5 -3.63707 | opp_overlap 2329856 AAAAGACAGAAAAAA GGCAGAAACCT CAAATT AGATTTCTGCC TTTACAACTTCTATT mqo2 2331385 - 2329898 - | putative malate:quinone oxidoreductase TERM 2886 2330746 - 2330764 + g 70 -8.2 -3.31589 | overlap 2330739 ATTTTTTGTCTCCAA GTTGTTGG AAA CCAATAAC TTCATGATTGTAATT TERM 2887 2332060 - 2332078 + G 72 -3.9 -4.99043 | gap 1, opp_overlap 2332060 2332062, overlap 2332060 2332062 GCACCTCATTTTAAA G-ACATCG GAAT CGATGTAC TTTTCTTTATCGGCA Sca_2267 2331673 - 2332536 + | hypothetical protein Sca_2268 2333482 - 2332619 - | hypothetical protein, similar to short-chain dehydrogenase/oxidoreductase TERM 2888 2332761 - 2332741 - G 82 -7.5 -4.43909 | overlap 2332721 ATTTTAAGAAAATAA GCGGTTTAG CTC CCATACCGC CAGCATAACGTGTTT Sca_2269 2334542 - 2333529 - | hypothetical protein TERM 2889 2334964 - 2335001 + r 77 -5.6 -4.92756 | opp_overlap 2334964 ACAGTTAAGCAAAAA GCAGCTGAAACGCT CTCTCCCATA AGCACTTCAGCTGC TTTATTTTTAATAAT TERM 2890 2335001 - 2334964 - R 100 -10.7 -4.89009 | opp_overlap 2334964 ACAGTTAAGCAAAAA GCAGCTGAAACGCTC TCTCCCAT AAGCACTTCAGCTGC TTTATTTTTAATAAT Sca_2270 2335496 - 2335026 - | hypothetical protein, similar to transcriptional regulator TERM 2891 2335097 - 2335107 + g 75 -5.4 -4.77442 | TATCCTCTAATTTGT TGAC GAA GTCA TTTATTTCTTCTATT TERM 2892 2335461 - 2335478 + g 80 -11.3 -3.15708 | opp_overlap 2335457, overlap 2335464 CATCAAAATGAGGTC GAAGCGC GTCA GCGCTTC TTGCATATCATATGT Sca_2271 2337018 - 2335585 - | hypothetical protein TERM 2893 2337162 - 2337148 - R 72 -8.6 -3.01712 | opp_overlap 2337146 TCGTTTTTTTTAATA GTACAC CCT GTGTAC GATTTATAATAATAA TERM 2894 2337296 - 2337313 + r 87 -3.5 -5.93809 | AAACGGTTACATTTA TAGTCTT TTAA AAGATTA TTTTTTTTGTAAAGA TERM 2895 2337492 - 2337459 - R 100 -9.9 -5.33405 | gap 1, opp_overlap 2337454 2337459 2337461 TTTATGAAATAAAAA GACAGATTTTCATTTA TCA TAAA-GAAAATCTGCC TTTTACTTCTGAAAA TERM 2896 2337459 - 2337492 + r 82 -7.7 -4.48987 | gap 1, opp_overlap 2337459, overlap 2337454 2337461 TTTATGAAATAAAAA GACAGATTTTCATTTA TCA TAAA-GAAAATCTGCC TTTTACTTCTGAAAA TERM 2897 2337461 - 2337490 + r 70 -8.9 -2.56864 | gap 1, opp_overlap 2337459, overlap 2337459 2337454 TATGAAATAAAAAGA CAGATTTTCATTTA TCA TAAA-GAAAATCTG CCTTTTACTTCTGAA Sca_2272 2338726 - 2337536 - | Glycerate kinase Sca_2273 2338866 - 2339291 + | conserved hypothetical protein, similar to general stress protein TERM 2898 2339301 - 2339322 + T 100 -9.5 -5.14563 | opp_overlap 2339301 GATTAATATTTATAA GGTCATTTC TTGG GAAATGGCC TTTTTTAATGCAAAA TERM 2899 2339336 - 2339367 + T 73 -8.8 -3.09301 | opp_overlap 2339338, overlap 2339332 2339335 2339328 2339338 CCTTTTTTAATGCAA AAGACTTCTGCTCA TTTT TGAACAGAAGTCTA ATTATTATTTATAAT TERM 2900 2339338 - 2339365 + T 91 -11.4 -3.08962 | opp_overlap 2339338, overlap 2339332 2339336 2339335 2339328 TTTTTTAATGCAAAA GACTTCTGCTCA TTTT TGAACAGAAGTC TAATTATTATTTATA TERM 2901 2339365 - 2339338 - T 100 -13.6 -4.27316 | opp_overlap 2339332 2339338 2339336 2339335 2339328 TTTTTTAATGCAAAA GACTTCTGCTCA TTTT TGAACAGAAGTC TAATTATTATTTATA Sca_2274 2340235 - 2339372 - | similar to squalene synthase Sca_2275 2341864 - 2340530 - | hypothetical protein TERM 2902 2342095 - 2342074 - R 90 -6.6 -5.55769 | opp_overlap 2342074 CTTCATAACAAAAAA CAAGCCGT TGATTC ACAGCTTG TCTTTATCTATATCA Sca_2276 2342337 - 2342086 - | hypothetical protein TERM 2903 2342411 - 2342421 + H 85 -2.6 -5.84011 | opp_overlap 2342411 AAAGGCCTATATATA TAAT CAC ATTA TTTTTCTTTTTTCTT Sca_2277 2342684 - 2343790 + | hypothetical protein TERM 2904 2343824 - 2343834 + T 70 -4 -4.855 | opp_overlap 2343824 AACCAAAAAATACGA TACA TAT TGTA TTATTTTTCTTTTTA TERM 2905 2344237 - 2344256 + T 89 -9.3 -4.3277 | opp_overlap 2344237 AATCACAAACAAAAA GGCTAGC CGTACA GCTAGCC TTTCTCTTATATATC TERM 2906 2344256 - 2344237 - T 100 -10 -5.4182 | opp_overlap 2344237 AATCACAAACAAAAA GGCTAGCC GTAC AGCTAGCC TTTCTCTTATATATC Sca_2278 2344472 - 2344275 - | hypothetical protein TERM 2907 2344766 - 2344791 + H 88 -5.6 -5.50925 | gap 1, overlap 2344760 AGACTGCTCTCTGCC TACGC-TGATT TTAGT AATCATGCGTA TTTTTTATGTTCATT TERM 2908 2344901 - 2344883 - g 70 -8.2 -3.35813 | opp_overlap 2344894, overlap 2344894 GGCTAGGTCAAGTAA TCAGCAAA ACG CTTGCTGA ACAAGGTTTCAACAT TERM 2909 2345498 - 2345473 - g 76 -4.7 -5.02476 | opp_overlap 2345491, overlap 2345459 2345474 ACACCTTTGAAAAAA GTGACAACACC TAAA GATGTTGCCAA TACGGTAGCTTATCT TERM 2910 2345497 - 2345474 - g 72 -8.2 -3.60762 | opp_overlap 2345491, overlap 2345459 2345473 CACCTTTGAAAAAAG TGACAACACC TAAA GATGTTGCCA ATACGGTAGCTTATC fabG5 2344825 - 2345526 + | 3-oxoacyl-[acyl-carrier protein] reductase TERM 2911 2345627 - 2345648 + F 70 -5.1 -4.66418 | overlap 2345629 ATAGACCAAATTTAT TAGGGAGAG CTTA TTCTCCCTC TTTATTATTCTTTTA TERM 2912 2345629 - 2345646 + F 76 -7.7 -3.90009 | overlap 2345627 AGACCAAATTTATTA GGGAGAG CTTA TTCTCCC TCTTTATTATTCTTT Sca_2280 2345690 - 2346994 + | putative nitrilotriacetate monooxygenase TERM 2913 2347275 - 2347291 + T 72 -4.5 -4.90869 | opp_overlap 2347275 2347278 CTGAAGCCTCTATAA TAGTAGT TGC ACTATTA TTTTTAGTTACTAAT Sca_2281 2348152 - 2347508 - | hypothetical protein Sca_2282 2349042 - 2348305 - | hypothetical protein TERM 2914 2349192 - 2349171 - R 100 -9.4 -4.89852 | opp_overlap 2349171 2349169 2349167 CTATATGTATAAAAA GGGCCGGA ACAAAG TCCAGCCC TCTATTTAAATGATT Sca_2283 2351862 - 2349208 - | hypothetical protein TERM 2915 2349265 - 2349247 - G 71 -7.4 -3.9461 | GCGTCCGAATAATAA TGCAGAAC CTA GTGCTGCA AACAAGCCACCGAAT TERM 2916 2350639 - 2350669 + g 77 -9.8 -3.15544 | overlap 2350622 AGCATCAACTGGTGC TGCTTGTGCTGAAA AAG TTTGAGCACTAGCA TTGCTAGAAGTAGAA TERM 2917 2351343 - 2351355 + g 73 -6.3 -4.47161 | TCACTAATTGTGATT GATCA GTT TGATC TGTTTTTTGTTCTTT TERM 2918 2351814 - 2351830 + g 73 -6.6 -4.208 | CTGCTGTCATCTTAC GAATCG AATAA CGATTC TTTCTGCTTTTGAAA TERM 2919 2352111 - 2352149 + r 87 -10.7 -3.35072 | gap 1, opp_overlap 2352122, overlap 2352117 2352122 CCACATTTTATTTAA TTAAATAAAAACTCGGAA ATAA TTCCGAG-TTTTATTTGA TTACGTTTAATTATT TERM 2920 2352117 - 2352144 + r 90 -10 -3.98173 | opp_overlap 2352122, overlap 2352111 2352122 TTTATTTAATTAAAT AAAAACTCGGAA ATAA TTCCGAGTTTTA TTTGATTACGTTTAA TERM 2921 2352139 - 2352122 - R 100 -9.9 -5.38326 | opp_overlap 2352117 2352111 2352122 TTAATTAAATAAAAA CTCGGAA ATAA TTCCGAG TTTTATTTGATTACG TERM 2922 2352122 - 2352139 + r 100 -9.9 -4.99947 | opp_overlap 2352122, overlap 2352117 2352111 TTAATTAAATAAAAA CTCGGAA ATAA TTCCGAG TTTTATTTGATTACG Sca_2284 2354183 - 2352156 - | hypothetical protein Sca_2285 2354247 - 2354435 + | hypothetical protein TERM 2923 2354527 - 2354501 - T 100 -9.6 -5.4505 | opp_overlap 2354501 TTTTCCAACAAAAAA TAAGTCCAGA AATTTCA TCTGGACTTA TTTTTTATGCATTAT TERM 2924 2354501 - 2354527 + T 100 -9.6 -5.3236 | opp_overlap 2354501 TTTTCCAACAAAAAA TAAGTCCAGA AATTTCA TCTGGACTTA TTTTTTATGCATTAT Sca_2286 2355008 - 2354532 - | putative peptide methionine sulfoxide reductase TERM 2925 2354831 - 2354851 + g 73 -5.5 -4.59109 | overlap 2354834 AATCTTTGGCACTTA CTTTATTTG AAT CAAATATAG TTTTTACACACTCTA Sca_2287 2355324 - 2356067 + | putative short-chain dehydrogenase TERM 2926 2356128 - 2356074 - T 100 -10.4 -6.0427 | opp_overlap 2356079 2356082 2356090 ATGATATAAAAAAAA TCAAAGCATAAAAAAATCGCCTGA TTTATTG TTAGGCGATTTCTTTATACTTTTA ATATTTATAAGGATC TERM 2927 2356079 - 2356123 + T 89 -8.8 -4.53036 | opp_overlap 2356074, overlap 2356082 2356090 ATAAAAAAAATCAAA GCATAAAAAAATCGCCTGAT TTATT GTTAGGCGATTTCTTTATAC TTTTAATATTTATAA TERM 2928 2356082 - 2356120 + T 76 -9.1 -3.19995 | opp_overlap 2356074, overlap 2356079 2356090 AAAAAAATCAAAGCA TAAAAAAATCGCCTGAT TTATT GTTAGGCGATTTCTTTA TACTTTTAATATTTA TERM 2929 2356090 - 2356112 + T 76 -6.3 -4.66388 | opp_overlap 2356074, overlap 2356082 2356079 CAAAGCATAAAAAAA TCGCCTGAT TTATT GTTAGGCGA TTTCTTTATACTTTT Sca_2288 2356599 - 2356126 - | hypothetical protein TERM 2930 2356798 - 2356762 - R 74 -6.6 -4.25389 | opp_overlap 2356764 2356765, overlap 2356764 2356765 ATTATAAGATATAAA TATGTCCCATTCGTCA CTTTC TTACGAATGGGACGTT TATCTTGTTATTGAA TERM 2931 2356796 - 2356764 - R 84 -9.2 -3.71649 | opp_overlap 2356764 2356765, overlap 2356762 2356765 TATAAGATATAAATA TGTCCCATTCGTCA CTTTC TTACGAATGGGACG TTTATCTTGTTATTG TERM 2932 2356764 - 2356796 + r 100 -11.4 -4.39954 | opp_overlap 2356764 2356762 2356765, overlap 2356765 TATAAGATATAAATA TGTCCCATTCGTCA CTTTC TTACGAATGGGACG TTTATCTTGTTATTG TERM 2933 2356795 - 2356765 - R 100 -12.7 -2.81905 | opp_overlap 2356764 2356765, overlap 2356764 2356762 ATAAGATATAAATAT GTCCCATTCGTCA CTTTC TTACGAATGGGAC GTTTATCTTGTTATT TERM 2934 2356765 - 2356795 + r 100 -12.7 -3.22345 | opp_overlap 2356765 2356764 2356762, overlap 2356764 ATAAGATATAAATAT GTCCCATTCGTCA CTTTC TTACGAATGGGAC GTTTATCTTGTTATT mocA 2357888 - 2356806 - | putative oxidoreductase protein Sca_2290 2358104 - 2359291 + | hypothetical protein Sca_2291 2359288 - 2359974 + | hypothetical protein Sca_2292 2360192 - 2360326 + | hypothetical protein TERM 2935 2360365 - 2360395 + F 100 -9.9 -5.48063 | opp_overlap 2360365 AAATATTATTTAAAG TGAGATTAGGTAC TTCAT GTATCTAGTCTCA TTTTTTATCTTCAAT Sca_2293 2360516 - 2361700 + | hypothetical protein Sca_2294 2361755 - 2361976 + | hypothetical protein TERM 2936 2361980 - 2362015 + T 71 -5.5 -4.38774 | gap 1, opp_overlap 2361977 2361984, overlap 2361983 2361984 AAAAACAAGTAATTA TCAA-GCCCCAAACAG TCTGT CTGTTCGGGGCATTAA TTTTGCTGTACTATT TERM 2937 2361983 - 2362011 + T 80 -8.8 -3.73858 | opp_overlap 2361977 2361984, overlap 2361980 2361984 AACAAGTAATTATCA AGCCCCAAACAG TCTGT CTGTTCGGGGCA TTAATTTTGCTGTAC TERM 2938 2361984 - 2362010 + T 100 -12.3 -2.83592 | opp_overlap 2361977 2361984, overlap 2361983 2361980 ACAAGTAATTATCAA GCCCCAAACAG TCTGT CTGTTCGGGGC ATTAATTTTGCTGTA TERM 2939 2362010 - 2361984 - T 100 -14.5 -3.30956 | opp_overlap 2361984 2361983 2361980, overlap 2361977 ACAAGTAATTATCAA GCCCCAAACAG TCTGT CTGTTCGGGGC ATTAATTTTGCTGTA Sca_2295 2362657 - 2362055 - | hypothetical protein TERM 2940 2362777 - 2362743 - R 100 -9.4 -4.92363 | overlap 2362746 AAATAGCCATAAAAA TAAGCTTGTACATCCT TTG ACGACGTACAAGCTTG AAAGTTCATTCTTTA TERM 2941 2362774 - 2362746 - R 100 -11.1 -4.5448 | overlap 2362743 TAGCCATAAAAATAA GCTTGTACATCCT TTG ACGACGTACAAGC TTGAAAGTTCATTCT Sca_2296 2362971 - 2362783 - | hypothetical protein Sca_2297 2363211 - 2363020 - | hypothetical protein Sca_2298 2363592 - 2364509 + | putative dioxygenase TERM 2942 2364520 - 2364555 + T 89 -10.4 -3.76634 | opp_overlap 2364520, overlap 2364549 TATAAAATATAAAAA GGCTGTCCCAGCAC CAATAAAT GTACCGGGACAGCC TTCTGTCTTTAGACT TERM 2943 2364555 - 2364520 - T 100 -14.8 -5.32599 | opp_overlap 2364520 2364549 TATAAAATATAAAAA GGCTGTCCCAGCAC CAATAAAT GTACCGGGACAGCC TTCTGTCTTTAGACT Sca_2299 2364861 - 2364586 - | hypothetical protein Sca_2300 2365665 - 2364937 - | hypothetical protein Sca_2301 2365990 - 2366520 + | hypothetical protein TERM 2944 2366532 - 2366558 + F 100 -10.3 -5.50723 | opp_overlap 2366531 2366535 TTAAACATACTATAG GAATCACTTTG AATAA CAAGGTGATTC TTTTTATTTTGCTCA Sca_2302 2366644 - 2367579 + | hypothetical protein Sca_2303 2367785 - 2368738 + | hypothetical protein TERM 2945 2368747 - 2368773 + T 100 -13.8 -5.1286 | opp_overlap 2368747 ACAGTAAGAGGAGAA GCGGATGCATCT ATG AGATGTGTCCGC TTTTTGTCATTTTTA TERM 2946 2368773 - 2368747 - T 79 -9.4 -3.53933 | opp_overlap 2368747 ACAGTAAGAGGAGAA GCGGATGCATCT ATG AGATGTGTCCGC TTTTTGTCATTTTTA TERM 2947 2368888 - 2368864 - T 73 -5.8 -4.62069 | opp_overlap 2368882, overlap 2368882 GTCGTATTTTAAAAA GTCTAGACAT TAATC ACATCTAGAC TTAGAATTATACATT Sca_2304 2369561 - 2368926 - | hypothetical protein Sca_2305 2370336 - 2369683 - | hypothetical protein Sca_2306 2371030 - 2370329 - | hypothetical protein Sca_2307 2372562 - 2371030 - | Superfamily I DNA and RNA helicases TERM 2948 2371864 - 2371874 + g 78 -4 -5.31877 | CTTTTCTCTTTTATC TTGA TCT TCAA TTTTTTCTAATAAAT TERM 2949 2372183 - 2372197 + g 81 -4.4 -5.25656 | TGTCTAGCTTTCTTT TTATAA TGA TTATAA TTTTTTACTCCTTTT Sca_2308 2372708 - 2373412 + | hypothetical protein TERM 2950 2373533 - 2373513 - T 79 -7.6 -4.2711 | opp_overlap 2373513, overlap 2373508 ATAAAAATAAGGAAA GCCAAGCA ACTAG TGCTTGAC TTGTCAAAATTTTAA Sca_2309 2374999 - 2373545 - | conserved protein, similar to carbon starvation protein A TERM 2951 2375298 - 2375277 - R 100 -10.1 -4.91429 | opp_overlap 2375277 AAAGCGTAAAGAAAA GCGCCGTGC TCCA ACACGACGC TTTCAGAGACCGTTT TERM 2952 2375345 - 2375383 + r 85 -2.6 -5.86976 | gap 1 CTAAGATTGTTTAAA TAAGCCATCTCAGTCAC ATCAAA GTTG-TGAGATGGTTTA TTTTTTGTTTTCTGA TERM 2953 2375515 - 2375486 - R 100 -15.1 -3.66497 | opp_overlap 2375490, overlap 2375490 TAATAAAGGCGTAAA GAAAGCGCCGTGC TCCA ACACGACGCTTTC AGAGACCGTTTAAAA TERM 2954 2375511 - 2375490 - R 100 -10.1 -4.4448 | opp_overlap 2375490, overlap 2375486 AAAGGCGTAAAGAAA GCGCCGTGC TCCA ACACGACGC TTTCAGAGACCGTTT TERM 2955 2375555 - 2375593 + r 100 -8.4 -5.72118 | gap 1, opp_overlap 2375559 ATGATTTTGATGATT TAAACCATCTCAACTAC GTCAAA GTTG-TGAGATGGTTTA TTTTTTATCTTTTTT TERM 2956 2375735 - 2375717 - R 70 -8.8 -2.64155 | TCCTTTCTAAATTCA GTGACGCC ATA GGCACCAC CTCCTTCAAAATAGA TERM 2957 2376013 - 2375989 - R 81 -7.2 -4.60889 | opp_overlap 2375989 AATCATTTTTAAAAA GCCTAGACGT TTTTC ACATCTAGAC TTAATTTTTTAGTTT opuD 2377608 - 2376022 - | opuD-like protein, glycine betaine transporter TERM 2958 2377820 - 2377854 + r 72 -8.7 -2.93893 | opp_overlap 2377825, overlap 2377825 AGAAGTGGAAAAAGA AAAAACATCGAGTCC GCGGG GGAGTCGATGTTTTG ATTTAATATATAATT TERM 2959 2377849 - 2377825 - R 100 -8.6 -5.93252 | opp_overlap 2377820 2377825 TGGAAAAAGAAAAAA CATCGAGTCC GCGGG GGAGTCGATG TTTTGATTTAATATA TERM 2960 2377825 - 2377849 + r 89 -8.6 -4.6038 | opp_overlap 2377825, overlap 2377820 TGGAAAAAGAAAAAA CATCGAGTCC GCGGG GGAGTCGATG TTTTGATTTAATATA Sca_2311 2379505 - 2377868 - | hypothetical protein TERM 2961 2378386 - 2378367 - G 71 -4.8 -4.70879 | opp_overlap 2378367 GTTAAAGCGTAAAAA GGTGCCGG TACA CCTGCTCC GATTTTATTCGCATG Sca_2312 2381012 - 2379576 - | hypothetical protein TERM 2962 2381131 - 2381145 + r 71 -2.2 -5.48303 | ATTTGTCTAACTTAG TAATTT TAA AAGTTA TTTTTTTAGCGTTGT Sca_2313 2382402 - 2381446 - | hypothetical protein TERM 2963 2381589 - 2381604 + g 79 -4.8 -5.13521 | TTTCAACTTCAAAGT GATTAT TTTC ATAATC TTTTTTAAGTAATTT TERM 2964 2382124 - 2382137 + g 73 -6.7 -4.30576 | overlap 2382126 TTTAGTAAGCCCTCT TGCTG CCAT CAGCA TTTTGATAATGGCCA TERM 2965 2382440 - 2382455 + H 77 -4.8 -5.29885 | opp_overlap 2382440 2382438 TTTCAACAAATTATA TCATTA AATT TAATGA TTTTATTTTTAAGTT Sca_2314 2382625 - 2382990 + | hypothetical protein TERM 2966 2383035 - 2382996 - T 100 -16 -3.57908 | gap 1, opp_overlap 2382997 2383002 2383006, overlap 2382997 2383002 2383006 CATTAAATAGTAGAA CCTAAACAAAGCAAGCCTT GGG ATGGCTTGCTTTGTTT-GG TGTATATTCTATTTA TERM 2967 2383035 - 2382997 - T 100 -16.2 -2.74022 | opp_overlap 2382997 2383002 2383006, overlap 2382996 2383002 2383006 ATTAAATAGTAGAAC CTAAACAAAGCAAGCCTT GGG ATGGCTTGCTTTGTTTGG TGTATATTCTATTTA TERM 2968 2382997 - 2383035 + T 100 -18.4 -3.21236 | opp_overlap 2382996 2382997 2383002 2383006, overlap 2383002 2383006 ATTAAATAGTAGAAC CTAAACAAAGCAAGCCTT GGG ATGGCTTGCTTTGTTTGG TGTATATTCTATTTA TERM 2969 2383002 - 2383030 + T 100 -14.7 -3.93985 | opp_overlap 2382996 2382997 2383002 2383006, overlap 2382997 2383006 ATAGTAGAACCTAAA CAAAGCAAGCCTT GGG ATGGCTTGCTTTG TTTGGTGTATATTCT TERM 2970 2383030 - 2383002 - T 100 -14.7 -3.82484 | opp_overlap 2383002 2382997 2383006, overlap 2382996 2382997 2383006 ATAGTAGAACCTAAA CAAAGCAAGCCTT GGG ATGGCTTGCTTTG TTTGGTGTATATTCT TERM 2971 2383006 - 2383026 + T 100 -9.7 -4.55209 | opp_overlap 2383006 2383002 2382996 2382997, overlap 2383002 2382997 TAGAACCTAAACAAA GCAAGCCTT GGG ATGGCTTGC TTTGTTTGGTGTATA TERM 2972 2383026 - 2383006 - T 100 -9.7 -4.51765 | opp_overlap 2383002 2382997 2383006, overlap 2383002 2382996 2382997 TAGAACCTAAACAAA GCAAGCCTT GGG ATGGCTTGC TTTGTTTGGTGTATA Sca_2315 2384013 - 2383048 - | hypothetical protein TERM 2973 2383373 - 2383385 + g 80 -6.3 -4.93877 | TCCTCTTCTTCTGGA TGGAT AAG ATCCA TTTTATTTACTACAA Sca_2316 2384386 - 2385315 + | hypothetical protein TERM 2974 2385379 - 2385400 + F 74 -7.3 -3.88703 | opp_overlap 2385379, overlap 2385377 CCCTCTAAAATTGAA CCCCAAAAT TCAA ATTTAGGGG TGTTTATTTATGAGC srlD 2385782 - 2386576 + | putative sorbitol-6-phosphate 2-dehydrogenase srlM 2386603 - 2388489 + | putative regulator of sorbitol operon TERM 2975 2388902 - 2388880 - g 73 -3.5 -5.1925 | GCACAATCGAAAAAA TACCTTC TCCTATTAT GAAGGTA GTAAACAAAGTAAAT Sca_2319 2388492 - 2388965 + | truncated ORF, similar to glucitol / sorbitol operon activator Sca_2320 2388949 - 2389500 + | putative sorbitol PTS, EIIC Sca_2321 2389512 - 2390531 + | putative sorbitol PTS, EIIBC Sca_2322 2390576 - 2390926 + | putative sorbitol PTS, EIIA TERM 2976 2390968 - 2390931 - T 100 -21.7 -2.91869 | opp_overlap 2390936, overlap 2390936 CAATAAAGTAGCATA CAAAAGACAACTCATCT TGAA AGATGAGTTGTCTTTTG ACATTTATAGTACAT TERM 2977 2390963 - 2390936 - T 100 -15.8 -4.59027 | opp_overlap 2390936, overlap 2390931 AAGTAGCATACAAAA GACAACTCATCT TGAA AGATGAGTTGTC TTTTGACATTTATAG TERM 2978 2390936 - 2390963 + T 100 -15.8 -4.26189 | opp_overlap 2390931 2390936 AAGTAGCATACAAAA GACAACTCATCT TGAA AGATGAGTTGTC TTTTGACATTTATAG Sca_2323 2392335 - 2391085 - | hypothetical protein Sca_2324 2393379 - 2392339 - | putative restriction enzyme Sca_2325 2394793 - 2393615 - | hypothetical protein TERM 2979 2394517 - 2394529 + g 73 -3.5 -5.1848 | opp_overlap 2394517 CGTTTTTTTCATATA TATAA TTT TTATA TTTTTTCAATTCATT TERM 2980 2394661 - 2394681 + g 81 -6.9 -4.60255 | opp_overlap 2394660 2394659 2394676, overlap 2394650 2394670 2394676 CATTCTGTATAAATT CTACAGCTT TAA AAACTGTAG TTTTTCCACAGTTAT Sca_2326 2395581 - 2394844 - | hypothetical protein Sca_2327 2395874 - 2396827 + | hypothetical protein TERM 2981 2397005 - 2397019 + G 70 -6.4 -4.06177 | overlap 2396992 2397006 CATTGCTGATCGCTA TCGCAA TCA TTGCGG TTATTATATTCTTTG Sca_2328 2396827 - 2398131 + | hypothetical protein TERM 2982 2398138 - 2398163 + T 100 -11.9 -4.78661 | opp_overlap 2398138, overlap 2398160 GGAGATTAATAGAAA CTGCTCAGACT TTAA GGTCTGGGCAG TTTTAATTTTTAAAT TERM 2983 2398163 - 2398138 - T 84 -9 -4.2586 | opp_overlap 2398138 2398160 GGAGATTAATAGAAA CTGCTCAGAC TTTAAG GTCTGGGCAG TTTTAATTTTTAAAT Sca_2329 2398604 - 2398209 - | hypothetical protein Sca_2330 2398955 - 2399317 + | putative transcriptional regulator, ArsR family Sca_2331 2399319 - 2400551 + | putative NADH oxidase-related oxidoreductase protein Sca_2332 2400597 - 2401535 + | hypothetical protein TERM 2984 2401585 - 2401617 + T 100 -14.9 -5.18995 | opp_overlap 2401585 CAGACGTGTTAAAAA GCATGCGTTTCCTAC GTT GAAGGATACGCATGC TTTTTATATTATCTT TERM 2985 2401617 - 2401585 - T 100 -14.9 -4.59109 | opp_overlap 2401585 CAGACGTGTTAAAAA GCATGCGTTTCCTAC GTT GAAGGATACGCATGC TTTTTATATTATCTT Sca_2333 2402781 - 2401651 - | putative succinyl-diaminopimelate desuccinylase TERM 2986 2401865 - 2401875 + g 74 -8.2 -3.70444 | overlap 2401863 CCAAATACTTTAGGG GGCG GTT CGCC TGTTGTTTGTTCAAT TERM 2987 2402879 - 2402858 - R 100 -11.7 -5.71638 | opp_overlap 2402858 2402855 TAAGAATTAAAAAAA CTGACAACT TCCG AGTTGTCAG TCATATCATATATAT TERM 2988 2402858 - 2402879 + r 89 -11.7 -2.69674 | opp_overlap 2402858, overlap 2402855 TAAGAATTAAAAAAA CTGACAACT TCCG AGTTGTCAG TCATATCATATATAT Sca_2334 2403020 - 2402895 - | hypothetical protein TERM 2989 2404055 - 2404045 - g 70 -5.4 -4.47007 | GAAAAAGCAAAAGAA GTAG GAG CTAC GTATGTAGTGAACTC gutB 2403415 - 2404467 + | alcohol dehydrogenase, zinc-containing TERM 2990 2404524 - 2404501 - f 100 -15.4 -3.38584 | opp_overlap 2404501 AGATGATTGAATGAA GACGGAAAGC AAAT GCTTTCCGTC TTTTTTCATGAAGTC TERM 2991 2404501 - 2404524 + F 100 -15.4 -5.15634 | opp_overlap 2404501 AGATGATTGAATGAA GACGGAAAGC AAAT GCTTTCCGTC TTTTTTCATGAAGTC katA 2404691 - 2406187 + | catalase Sca_2337 2406256 - 2406576 + | hypothetical protein TERM 2992 2406574 - 2406627 + T 75 -5.7 -4.80167 | gap 2, opp_overlap 2406585, overlap 2406582 2406585 2406623 TATATTCAAAACAAA TAA-TTAGAA-AAGCTGGGTACTTC TTTTAC GGAGTGCCCAGCTTCTTTTAGCTTA TTTTAATTTTTAGTA TERM 2993 2406582 - 2406617 + T 100 -10.5 -4.41817 | opp_overlap 2406585, overlap 2406574 2406585 AAACAAATAATTAGA AAAGCTGGGTACTTC TTTTAC GGAGTGCCCAGCTTC TTTTAGCTTATTTTA TERM 2994 2406614 - 2406585 - T 83 -7.8 -4.64157 | opp_overlap 2406582 2406574 2406585 CAAATAATTAGAAAA GCTGGGTACTTC TTTTAC GGAGTGCCCAGC TTCTTTTAGCTTATT TERM 2995 2406585 - 2406614 + T 100 -12.2 -4.28369 | opp_overlap 2406585, overlap 2406582 2406574 CAAATAATTAGAAAA GCTGGGTACTTC TTTTAC GGAGTGCCCAGC TTCTTTTAGCTTATT Sca_2338 2407550 - 2406630 - | hypothetical protein TERM 2996 2408381 - 2408393 + G 70 -3.3 -4.95547 | TTGCAGGTATCATCG GTGCT GGT GGCGC TTTTATTATTATCCC Sca_2339 2407912 - 2408670 + | hypothetical protein TERM 2997 2408671 - 2408702 + F 72 -5.3 -4.72007 | gap 1 GAATTAATTTTTTAA TGATCAAGCCATCT TTTAC AGGTG-CTTGGTCA TTTATTTTGGTAAAA Sca_2340 2408759 - 2409661 + | hypothetical protein TERM 2998 2409679 - 2409700 + T 90 -7.3 -5.64006 | ATAACTTTTCGCTAA GCTGATACT CCTA GGTATCGGC TTTTTTTAGTTGAAT TERM 2999 2410062 - 2410032 - T 100 -9.9 -5.08601 | opp_overlap 2410026 2410034 2410036 TCAGCTGAACAAAAA GACAGAACATTCA CCTTT CAAATGTTCTGTC TACTAGTTAATTCAA Sca_2341 2410975 - 2410112 - | truncated putative beta-glucosidase Sca_2342 2412355 - 2411012 - | putative glucosidase Sca_2343 2412420 - 2413010 + | hypothetical protein TERM 3000 2413094 - 2413057 - T 72 -4.1 -5.08601 | opp_overlap 2413057 2413056 2413059, overlap 2413060 CTAGCTGAAGAAAAA CATCCTGAACAATAGGT AATG ATCTAAAGTTCAGGGTG GTTAATATTAATGGC capM 2413659 - 2413102 - | capsular polysaccharide synthesis enzyme Cap5M TERM 3001 2413348 - 2413330 - G 78 -9.6 -3.55714 | ATATTGATTATATAA TGCTGGTC TAG GACCAACA ACTGACATGTCACCT TERM 3002 2413395 - 2413380 - G 70 -3.2 -4.98616 | opp_overlap 2413382, overlap 2413382 TTAAAATATTAAAAA GTTGAG GCAG CTCATC TATTGAAGTACGTCT Sca_2345 2414550 - 2413660 - | hypothetical protein TERM 3003 2413905 - 2413915 + g 74 -4 -5.22289 | ATTTCTCAGCAACTG TTTG AAT CAAA TTTTTATATTTAATA Sca_2346 2415707 - 2414547 - | putative capsular polysaccharide biosynthesis protein TERM 3004 2415531 - 2415501 - G 84 -11.5 -3.21099 | opp_overlap 2415501 TTTCTTCATCATCAA GATAGATTTTAAA TTACT TTTAAAATCTATC TTTCTATCTATTTTG TERM 3005 2415501 - 2415531 + g 91 -11.5 -4.27033 | opp_overlap 2415501 TTTCTTCATCATCAA GATAGATTTTAAA TTACT TTTAAAATCTATC TTTCTATCTATTTTG Sca_2347 2416668 - 2415712 - | hypothetical protein capL 2417944 - 2416670 - | capsular polysaccharide biosynthesis protein CapL TERM 3006 2417300 - 2417317 + g 71 -7 -3.8398 | opp_overlap 2417300, overlap 2417297 2417292 AAATTCATTCATTAA CGCGAT ATTCAC ATCGCG TTGTGTATTTTCAAT capI 2419005 - 2417992 - | capsular polysaccharide biosynthesis protein Cap I Sca_2350 2420060 - 2419008 - | hypothetical protein Sca_2351 2421443 - 2420076 - | hypothetical protein TERM 3007 2420588 - 2420578 - G 70 -5.4 -4.39226 | ACAACTATAAAACAA CCTA ACA TAGG ATAAGATATTACATA Sca_2352 2422737 - 2421436 - | hypothetical protein TERM 3008 2422141 - 2422156 + g 73 -6.2 -4.48713 | AAACGCACAATATTT TCCTAA CGTG TTAGGA TTTATTATTAATCCA capD'' 2424138 - 2422762 - | truncated capsular polysaccharide synthesis enzyme CapD (fragment 2) TERM 3009 2422894 - 2422904 + g 72 -4 -5.00388 | TTTTTCGTAGACTTG TTCA GGA TGAA TTTCTTTTTCATTTA TERM 3010 2424128 - 2424144 + g 80 -6.6 -4.86385 | CCACCACGACCTGCA CCTACT ACCAA AGTAGG TTTCTTTTTGCCACT capD' 2424567 - 2424190 - | truncated capsular polysaccharide synthesis enzyme CapD (fragment 1) TERM 3011 2424311 - 2424321 + g 70 -6.8 -4.13945 | opp_overlap 2424310 GTAGCTAAAATTGAT GCAG TCA CTGC TTTTACAATCAACAT capC 2425355 - 2424591 - | capsular polysaccharide biosynthesis protein capB 2426053 - 2425355 - | capsular polysaccharide biosynthesis protein capA 2426743 - 2426072 - | putative capsular polysaccharide synthesis enzyme Cap5A Sca_2358 2427680 - 2427045 - | hypothetical protein Sca_2359 2428469 - 2427918 - | TetR family regulatory protein TERM 3012 2428066 - 2428052 - G 71 -8.6 -3.17916 | opp_overlap 2428051 2428050 2428065, overlap 2428051 2428065 AATAGAAAACTAAAT CATCTG GCA CAGATG GATCTTTTTCTATAA Sca_2360 2429551 - 2428637 - | putative transport protein TERM 3013 2429652 - 2429623 - R 76 -3.7 -5.38054 | opp_overlap 2429618 2429623, overlap 2429588 TTTGACAAATAAAAA GATGGTAAC CTTTTAAATGTT GTTACCATC TTTTGTCTTCTTTTT citH 2430978 - 2429671 - | citrat transporter TERM 3014 2430360 - 2430371 + g 74 -3 -5.28942 | opp_overlap 2430354 GAGATAAATTATTTT GAAT ACCA ATTC TTTTTCTTTCACGTG Sca_2362 2432237 - 2431158 - | hypothetical protein TERM 3015 2432375 - 2432416 + H 100 -16.9 -5.0916 | gap 1, opp_overlap 2432375 ATTTAATTGAGCAAA GAGGCTTATACAG-TATCCT TAA AGGATATCTGTGTAGGCCTC TTTTTGTGTTAAGGA TERM 3016 2432416 - 2432375 - H 100 -12.5 -3.79668 | gap 1, opp_overlap 2432375 ATTTAATTGAGCAAA GAGGCTTATACAG-TATCCT TAA AGGATATCTGTGTAGGCCTC TTTTTGTGTTAAGGA gabD 2432442 - 2433881 + | succinate-semialdehyde dehydrogenase (NADP+) Sca_2364 2433902 - 2435323 + | putative glutamine synthetase Sca_2365 2435373 - 2436140 + | putative oxidoreductase TERM 3017 2436239 - 2436189 - T 79 -8 -4.24599 | gap 1, opp_overlap 2436191 2436195, overlap 2436195 2436201 AATAAAATAAGCAAA CCTAAATTAAAACAGAGCTGA TCAACTCCCT TCAGCTCTGTTTTAATTT-GT TTTATAGTCCTGTTA TERM 3018 2436191 - 2436238 + T 100 -13.9 -4.50583 | opp_overlap 2436189 2436195 2436201, overlap 2436195 TAAAATAAGCAAACC TAAATTAAAACAGAGCTGA TCAACTCCCT TCAGCTCTGTTTTAATTTG TTTTATAGTCCTGTT TERM 3019 2436234 - 2436195 - T 100 -12.5 -3.89938 | opp_overlap 2436191 2436195, overlap 2436189 2436201 ATAAGCAAACCTAAA TTAAAACAGAGCTGA TCAACTCCCT TCAGCTCTGTTTTAA TTTGTTTTATAGTCC TERM 3020 2436195 - 2436234 + T 100 -12.5 -4.80453 | opp_overlap 2436195 2436189 2436201, overlap 2436191 ATAAGCAAACCTAAA TTAAAACAGAGCTGA TCAACTCCCT TCAGCTCTGTTTTAA TTTGTTTTATAGTCC TERM 3021 2436228 - 2436201 - T 81 -7.1 -4.59424 | opp_overlap 2436195 2436191, overlap 2436195 2436189 AAACCTAAATTAAAA CAGAGCTGA TCAACTCCCT TCAGCTCTG TTTTAATTTGTTTTA TERM 3022 2436257 - 2436313 + T 100 -13.4 -3.40392 | opp_overlap 2436267, overlap 2436267 TATAGTCCTGTTATC TCTATTAAAACTGCCTAAACAAAATT AAGTA AATGATGCTTAGGCAGTTTTGATAGA TTGGATTTATATTTT TERM 3023 2436303 - 2436267 - T 77 -7.4 -4.26076 | opp_overlap 2436267 2436257 TTATCTCTATTAAAA CTGCCTAAACAAAATT AAGTA AATGATGCTTAGGCAG TTTTGATAGATTGGA Sca_2366 2437603 - 2436320 - | hypothetical protein TERM 3024 2437733 - 2437700 - R 80 -6.2 -4.87318 | gap 2, opp_overlap 2437700 CCTAAAATGCAAAAA GATGCCTACA--GACC TCTC GGTCAATGTAAGCATC TTTGCTTTATATGCT Sca_2367 2438359 - 2437769 - | putative two-component system response regulator Sca_2368 2439665 - 2438340 - | conserved hypothetical protein, similar to two-component sensor histidine kinase TERM 3025 2439916 - 2439941 + r 78 -9.1 -3.26298 | opp_overlap 2439893 2439916, overlap 2439914 2439919 TTTACTGTAAAAAAA GAACCTATACT TTTT AGTACAGGTTC TCTGTTTAAACTGCT TERM 3026 2439941 - 2439916 - R 100 -11.3 -5.44119 | opp_overlap 2439916 2439914 2439919, overlap 2439893 TTTACTGTAAAAAAA GAACCTATACT TTTT AGTACAGGTTC TCTGTTTAAACTGCT adc 2440701 - 2439964 - | putative acetoacetate decarboxylase Sca_2370 2441744 - 2440716 - | hypothetical protein Sca_2371 2441844 - 2442728 + | hypothetical protein TERM 3027 2442724 - 2442773 + T 70 -4.4 -4.98255 | opp_overlap 2442716 2442735 2442737, overlap 2442737 AAGCATATTATACTG TATAATGAAAAGACAGACAGCG CTTTAA CGCTGTCTGTTTCATTATTGCA TTTTTATAATTAAAC TERM 3028 2442762 - 2442735 - T 100 -10.6 -4.49389 | opp_overlap 2442724 2442737, overlap 2442737 ACTGTATAATGAAAA GACAGACAGCGC TTTA ACGCTGTCTGTT TCATTATTGCATTTT TERM 3029 2442760 - 2442737 - T 100 -13.2 -3.85296 | opp_overlap 2442724 2442737, overlap 2442735 TGTATAATGAAAAGA CAGACAGCGC TTTA ACGCTGTCTG TTTCATTATTGCATT TERM 3030 2442737 - 2442760 + T 100 -12.5 -4.09292 | opp_overlap 2442737 2442735, overlap 2442724 TGTATAATGAAAAGA CAGACAGCG CTTTAA CGCTGTCTG TTTCATTATTGCATT adhC 2443893 - 2442766 - | putative alcohol dehydrogenase Sca_2373 2444755 - 2443907 - | hypothetical protein gabD 2444966 - 2446348 + | succinate-semialdehyde dehydrogenase TERM 3031 2446390 - 2446360 - f 73 -9.1 -2.71322 | opp_overlap 2446361, overlap 2446357 GTAATTCACATATTA CGCACAAAACCTA GACTT CAGGTTTTGTGCT TTTTTGATTTGTTTT TERM 3032 2446361 - 2446389 + F 100 -11.9 -5.48163 | opp_overlap 2446360 2446357 TAATTCACATATTAC GCACAAAACCT AGACTTC AGGTTTTGTGC TTTTTTGATTTGTTT TERM 3033 2446453 - 2446475 + F 78 -7 -4.58395 | opp_overlap 2446412, overlap 2446411 2446452 2446455 TGAGCAGAGTAATCG TACTGGTGTA CTC TACTCCAGTG TTTTTAAGGAGTGAA TERM 3034 2446455 - 2446473 + F 74 -7.4 -3.90762 | overlap 2446452 2446453 AGCAGAGTAATCGTA CTGGTGTA CTC TACTCCAG TGTTTTTAAGGAGTG Sca_2375 2446495 - 2447109 + | hypothetical protein TERM 3035 2447130 - 2447176 + T 100 -18.2 -4.10855 | opp_overlap 2447133, overlap 2447131 CATTGTTTCAACATT AAATGTACTGCACCCCAAAAGT TGA ACTTTTGGGGTGCAGTACAAAG TTTTCAACGGCTTTT TERM 3036 2447131 - 2447175 + T 100 -21.7 -3.0579 | opp_overlap 2447133, overlap 2447130 ATTGTTTCAACATTA AATGTACTGCACCCCAAAAGT TGA ACTTTTGGGGTGCAGTACAAA GTTTTCAACGGCTTT TERM 3037 2447173 - 2447133 - T 100 -28.7 -3.92324 | opp_overlap 2447131 2447130 TGTTTCAACATTAAA TGTACTGCACCCCAAAAGT TGA ACTTTTGGGGTGCAGTACA AAGTTTTCAACGGCT Sca_2376 2447964 - 2447422 - | hypothetical protein TERM 3038 2448344 - 2448304 - R 100 -12.8 -4.57482 | opp_overlap 2448315, overlap 2448282 TTACGCATAAATAAA CACCCCTAAACTTGAATT TTTCG AGTTCAACTTTAGGGGTG CAGTACAAAGAGTGT lytM 2449381 - 2448392 - | putative LytM-like peptidoglycan hydrolase Sca_2378 2450699 - 2449890 - | hypothetical protein Sca_2379 2451018 - 2451251 + | hypothetical protein TERM 3039 2451263 - 2451293 + T 71 -4.6 -4.83169 | opp_overlap 2451268, overlap 2451266 2451267 2451268 ATAGCATGATAAGAA GCAAAGGATCGACC AAA GGTTGATCCGCTTC TTTTTATAGGCACCT TERM 3040 2451267 - 2451289 + T 72 -8.4 -3.31001 | opp_overlap 2451268, overlap 2451266 2451263 2451268 CATGATAAGAAGCAA AGGATCGACC AAA GGTTGATCCG CTTCTTTTTATAGGC TERM 3041 2451268 - 2451288 + T 89 -11.9 -2.57877 | opp_overlap 2451268, overlap 2451267 2451266 2451263 ATGATAAGAAGCAAA GGATCGACC AAA GGTTGATCC GCTTCTTTTTATAGG TERM 3042 2451288 - 2451268 - T 91 -9.7 -4.12267 | opp_overlap 2451268 2451267 2451266 2451263 ATGATAAGAAGCAAA GGATCGACC AAA GGTTGATCC GCTTCTTTTTATAGG TERM 3043 2451341 - 2451318 - T 95 -8.2 -5.64274 | opp_overlap 2451315 2451308 2451318 2451320 GCACCTATAAAAAAA GCTGCCAGTA TCTA TACTGACAAC TTCTTTTCTATTTAA Sca_2380 2451991 - 2451371 - | putative NAD(P)H nitroreductase Sca_2381 2452063 - 2452413 + | putative transcriptional regulator TERM 3044 2452494 - 2452459 - T 100 -11.3 -3.88698 | opp_overlap 2452458 2452462, overlap 2452457 2452462 TACCCACATAAAACA CAAGTCCCCTCATTA CATCAT TAGTAAGGGGACTTG ATATTGGCCTACAAC TERM 3045 2452491 - 2452462 - T 75 -7.2 -4.05861 | opp_overlap 2452458 2452462, overlap 2452459 2452457 CCACATAAAACACAA GTCCCCTCATTA CATCAT TAGTAAGGGGAC TTGATATTGGCCTAC Sca_2382 2453434 - 2452574 - | hypothetical protein TERM 3046 2453355 - 2453368 + g 70 -5.3 -4.41241 | opp_overlap 2453355 CTCACATTTCCAAAC TCAGA AAGA TCTGA TTTTCTAACAGTTTC TERM 3047 2453684 - 2453654 - R 100 -12 -5.58209 | opp_overlap 2453650 2453654 TCAAAGTCAAAAAAA CGCTATGAAAGTCA TCA TCACTCTCATAGCG TTCCTTGTTAATTAA TERM 3048 2453654 - 2453684 + r 83 -9.8 -3.58329 | opp_overlap 2453654, overlap 2453650 TCAAAGTCAAAAAAA CGCTATGAAAGTCA TCA TCACTCTCATAGCG TTCCTTGTTAATTAA Sca_2383 2454429 - 2453692 - | hypothetical protein Sca_2384 2455864 - 2454500 - | conserved hypothetical protein, similar to permeases Sca_2385 2456594 - 2455869 - | hypothetical protein TERM 3049 2456466 - 2456483 + g 88 -11.3 -3.76968 | opp_overlap 2456465 2456469 2456470, overlap 2456470 ATTCATTGGAATGAC CAAGGGG GTGT CCCCTTG TTTAATAACTGCATT TERM 3050 2456470 - 2456480 + g 79 -8.2 -4.015 | opp_overlap 2456469 2456465 2456470, overlap 2456466 ATTGGAATGACCAAG GGGG TGT CCCC TTGTTTAATAACTGC Sca_2386 2457073 - 2456726 - | truncated putative amino acid permease (fragment 2) Sca_2387 2458102 - 2457089 - | truncated putative amino acid permease (fragment 1) TERM 3051 2458238 - 2458202 - R 100 -10.3 -5.04597 | opp_overlap 2458204, overlap 2458204 ATTCATATACAAAAA GACCCGCATTTATGC ATCATTA ACATAAATGCGGGTT TTCAAATTAATTATT TERM 3052 2458204 - 2458236 + r 100 -12.2 -4.21768 | opp_overlap 2458202 2458204 TCATATACAAAAAGA CCCGCATTTATG CATCATTAA CATAAATGCGGG TTTTCAAATTAATTA TERM 3053 2458236 - 2458204 - R 100 -12.9 -4.14422 | opp_overlap 2458204, overlap 2458202 TCATATACAAAAAGA CCCGCATTTATGC ATCATTA ACATAAATGCGGG TTTTCAAATTAATTA Sca_2388 2459784 - 2458249 - | solute:Na+ symporter protein, SSS family TERM 3054 2459068 - 2459052 - G 71 -4.5 -4.77157 | opp_overlap 2459043 GTAAGTTATTAAAAA TATTTCC CAG GAAAATA ATTGGAAGTGCCGCT nanA 2460695 - 2459814 - | N-acetylneuraminate lyase subunit TERM 3055 2460553 - 2460540 - G 78 -5.3 -4.90266 | TGTATTAATTAAAAA GTTCT CTCC AGAAC TACCGTTAACATATA Sca_2390 2460941 - 2461807 + | hypothetical protein Sca_2391 2462714 - 2461902 - | hypothetical protein Sca_2392 2462880 - 2463554 + | putative N-acylglucosamine-6-phosphate 2-epimerase nagB 2463577 - 2464305 + | glucosamine-6-phosphate isomerase TERM 3056 2464570 - 2464554 - g 80 -6.6 -4.80453 | GTATCAGAAAAGAAA GACTCT AAAAA AGAGTC CAAAAAAGATAAAAG Sca_2394 2464431 - 2464847 + | hypothetical protein TERM 3057 2464882 - 2464853 - T 95 -11.5 -3.86107 | opp_overlap 2464858, overlap 2464858 ACAGCAATAATATAA CAAAAGCGCACCC ATGC GGATGCGCTTTTT TGCTGTCAGAACCAT TERM 3058 2464877 - 2464858 - T 100 -11.4 -4.94147 | opp_overlap 2464858, overlap 2464853 AATAATATAACAAAA GCGCACCC ATGC GGATGCGC TTTTTTGCTGTCAGA TERM 3059 2464858 - 2464877 + T 100 -9.2 -5.21709 | opp_overlap 2464858 2464853 AATAATATAACAAAA GCGCACCC ATGC GGATGCGC TTTTTTGCTGTCAGA Sca_2395 2465838 - 2464888 - | putative CorA-like Mg2+ transporter protein TERM 3060 2465663 - 2465679 + g 78 -9.5 -3.57106 | opp_overlap 2465662 2465661 2465665 CCTAATGTATAAATG GATGAAG CAA CTTCATC TTGATTTAAATTCAA TERM 3061 2465949 - 2465920 - R 72 -4.4 -5.1166 | gap 1, opp_overlap 2465922, overlap 2465922 CATGAAAATTAAAAA GA-GAAGCCTCAA GCAAT TCGAGACTTCGTC TTTTGCAAAACCATT TERM 3062 2465946 - 2465922 - R 75 -7.2 -4.16392 | opp_overlap 2465922, overlap 2465920 TGAAAATTAAAAAGA GAAGCCTCAA GCAAT TCGAGACTTC GTCTTTTGCAAAACC lip 2468448 - 2466085 - | triacylglycerol lipase precursor TERM 3063 2466542 - 2466555 + g 73 -5.3 -4.59089 | TTATCCGTAGTTGTC CAAAG TTTA CTTTG TTTCTTTATACGTTC TERM 3064 2468752 - 2468715 - R 100 -14.5 -5.32699 | gap 1, opp_overlap 2468715 TTAAATATTAAAAAA GGTTGAAACCAAATCTCA TAT TGAGATT-AGTTTCAACC TTTGACTTAACACAA TERM 3065 2468715 - 2468752 + r 100 -12.3 -3.75153 | gap 1, opp_overlap 2468715 TTAAATATTAAAAAA GGTTGAAACCAAATCTCA TAT TGAGATTAG-TTTCAACC TTTGACTTAACACAA Sca_2397 2469452 - 2468769 - | ThiJ/PfpI family protein Sca_2398 2469801 - 2470775 + | hypothetical protein Sca_2399 2470759 - 2470998 + | hypothetical protein TERM 3066 2471037 - 2471075 + T 100 -15.5 -5.41941 | opp_overlap 2471040, overlap 2471040 CAAAACCATATTGTA AAAGGCTAGGTAATTCC AATGA GGAGTTACCTAGCCTTA TTTTTGTTTAATTTA TERM 3067 2471072 - 2471040 - T 100 -15 -4.18058 | opp_overlap 2471037 2471040 AACCATATTGTAAAA GGCTAGGTAATTCC AATGA GGAGTTACCTAGCC TTATTTTTGTTTAAT TERM 3068 2471040 - 2471072 + T 100 -17.2 -4.74052 | opp_overlap 2471040, overlap 2471037 AACCATATTGTAAAA GGCTAGGTAATTCC AATGA GGAGTTACCTAGCC TTATTTTTGTTTAAT pgm5 2471670 - 2471083 - | phosphoglycerate mutase family protein Sca_2401 2471912 - 2472532 + | hypothetical protein TERM 3069 2472569 - 2472541 - T 100 -10.4 -5.52079 | opp_overlap 2472535 2472541 ACAGTAAAACAAAAA CGCTGAATGG GAAATTCAT CCATTCAGCG TTTCGCTTTATTGTA TERM 3070 2472541 - 2472569 + T 95 -11.1 -3.94868 | opp_overlap 2472541, overlap 2472535 ACAGTAAAACAAAAA CGCTGAATGGG AAATTCA TCCATTCAGCG TTTCGCTTTATTGTA Sca_2402 2474832 - 2472577 - | putative exinuclease ABC subunit A TERM 3071 2474891 - 2474942 + r 100 -12.1 -4.59774 | opp_overlap 2474895 2474900, overlap 2474900 ATTTACCCTGTTCAA CAAATAAAATGACTGG-ATGCCTTA TTAT TAAAGCATTCCAGTCATTTT-TTTG TTTCTATTTTCTTTG TERM 3072 2474939 - 2474895 - R 100 -11.8 -4.15222 | gap 1, opp_overlap 2474891 2474900, overlap 2474900 ACCCTGTTCAACAAA TAAAATGACTGG-ATGCCTTA TTAT TAAAGCATTCCAGTCATTTTT TTGTTTCTATTTTCT TERM 3073 2474934 - 2474900 - R 100 -11.7 -5.09762 | gap 1, opp_overlap 2474891 2474900, overlap 2474895 GTTCAACAAATAAAA TGACTGG-ATGCCTTA TTAT TAAAGCATTCCAGTCA TTTTTTTGTTTCTAT TERM 3074 2474900 - 2474934 + r 100 -9.5 -6.04953 | gap 1, opp_overlap 2474900 2474895, overlap 2474891 GTTCAACAAATAAAA TGACTGG-ATGCCTTA TTAT TAAAGCATTCCAGTCA TTTTTTTGTTTCTAT Sca_2403 2477261 - 2474946 - | hypothetical protein TERM 3075 2474988 - 2475000 + g 82 -7.7 -4.51174 | opp_overlap 2474988 2474987 TACCAATTCATCAAT CACAC GTT GTGTG TTTTGGTTATCATGG TERM 3076 2475994 - 2476004 + g 70 -5.4 -4.41633 | TTGCCTGATTCTACT GCTT TAG AAGC TTCTTTTTCAAAATA TERM 3077 2476632 - 2476655 + g 76 -9.8 -3.08901 | opp_overlap 2476636, overlap 2476636 ATCTTTCATCTTTTT CAAATCATTA AGTC TAATGATTTG TCTATGCTTTCCTTT TERM 3078 2476833 - 2476847 + g 78 -10 -3.38072 | GAAAATAGCAGGATC GCCAAC ACG GTTGGC TTCATCTTCAATAAA Sca_2404 2479950 - 2477395 - | hypothetical protein TERM 3079 2478686 - 2478696 + g 72 -4 -4.91852 | opp_overlap 2478686 ATTGTTATAAACACA TCAA TAA TTGA TTTCTTTTTAGTGAG Sca_2405 2480110 - 2479967 - | hypothetical protein fadX 2480494 - 2482050 + | putative acetyl-CoA transferase fadE 2482080 - 2483597 + | putative acid-CoA ligase Sca_2408 2483677 - 2484885 + | putative glutaryl-CoA dehydrogenase Sca_2409 2484930 - 2487191 + | putative fatty oxidation complex protein fadA 2487222 - 2488406 + | putative acetyl-CoA acetyltransferase TERM 3080 2488419 - 2488441 + F 100 -9.9 -5.243 | opp_overlap 2488422, overlap 2488409 TAGATTGATTTGAAT GCAGATCAC TTCAT GTGGTCTGC TTTTTTAGTCGTTTC TERM 3081 2489018 - 2489060 + G 100 -13.8 -4.00486 | opp_overlap 2489019 2489029, overlap 2489019 2489029 TTGATTAAACAATTC ACATTAAAAAACTTCGCT AAACAAC AGCGAAGTTTTTTAATGA TTGTTATATTATAGC TERM 3082 2489059 - 2489019 - g 100 -18 -2.72559 | opp_overlap 2489018 2489019 2489029, overlap 2489029 TGATTAAACAATTCA CATTAAAAAACTTCGCTA AACAA CAGCGAAGTTTTTTAATG ATTGTTATATTATAG TERM 3083 2489019 - 2489059 + G 100 -17.3 -2.99569 | opp_overlap 2489019 2489029, overlap 2489018 2489029 TGATTAAACAATTCA CATTAAAAAACTTCGCT AAACAAC AGCGAAGTTTTTTAATG ATTGTTATATTATAG TERM 3084 2489029 - 2489049 + G 90 -6.9 -5.22794 | opp_overlap 2489019 2489029, overlap 2489019 2489018 ATTCACATTAAAAAA CTTCGCT AAACAAC AGCGAAG TTTTTTAATGATTGT TERM 3085 2489049 - 2489029 - g 93 -7.6 -5.22312 | opp_overlap 2489029 2489019 2489018, overlap 2489019 ATTCACATTAAAAAA CTTCGCTA AACAA CAGCGAAG TTTTTTAATGATTGT Sca_2411 2488535 - 2489074 + | hypothetical protein Sca_2412 2490008 - 2489064 - | conserved protein, similar to fructose-1,6-bisphosphatase, class II, fbp-1 Sca_2413 2490456 - 2490013 - | conserved protein, similar to ribose 5-phosphate isomerase B Sca_2414 2491098 - 2490469 - | hypothetical protein Sca_2415 2492104 - 2491085 - | dihydroxyacetone kinase family protein Sca_2416 2493304 - 2492120 - | putative alpha-ketoglutarate permease TERM 3086 2492741 - 2492725 - G 79 -8.1 -4.07568 | opp_overlap 2492725 2492724 2492722 2492727 GCTCTCTTCCTAAAA TAGTGAT ACC ATCACTA ATATCTTTCAAATTT gutB 2494536 - 2493454 - | putative zinc-binding dehydrogenase TERM 3087 2495022 - 2494995 - g 82 -7.8 -4.49314 | CATTAGCAAAAATAA GCAACCATCAAT GTAT ATTAATGGATGC AAGCTCTACAACTTA glpR2 2494712 - 2495482 + | putative regulatory protein (DeoR family) TERM 3088 2495544 - 2495494 - T 100 -15.8 -4.3207 | opp_overlap 2495499, overlap 2495499 ATAGAAAGATATAAA TAAAAGCACATCCAGTGAGTTT GATTAAT AAATTCACTGGATGTGCTTTTG TATCAAATAGCAACA TERM 3089 2495499 - 2495539 + T 100 -18.6 -4.54047 | opp_overlap 2495494 2495499 AAGATATAAATAAAA GCACATCCAGTGAGTTTG ATTAA TAAATTCACTGGATGTGC TTTTGTATCAAATAG TERM 3090 2495539 - 2495499 - T 100 -15.7 -5.08878 | opp_overlap 2495499, overlap 2495494 AAGATATAAATAAAA GCACATCCAGTGAGTTT GATTAAT AAATTCACTGGATGTGC TTTTGTATCAAATAG rbsK 2496517 - 2495603 - | ribokinase rbsD 2496940 - 2496536 - | ribose permease Sca_2421 2497847 - 2496966 - | putative sugar transport protein TERM 3091 2498039 - 2497994 - R 82 -6.3 -5.21709 | overlap 2497999 TTTGATATGAAAAAA CGAAAGGTCCCAGAAATGG CGTTTATT CCACTTCTAAGACCTTTTA AAATTAGACATTCAG TERM 3092 2498034 - 2497999 - R 85 -8.4 -4.45175 | overlap 2497994 TATGAAAAAACGAAA GGTCCCAGAAATGG CGTTTATT CCACTTCTAAGACC TTTTAAAATTAGACA Sca_2422 2498365 - 2498051 - | hypothetical protein Sca_2423 2499043 - 2498432 - | conserved hypothetical protein, similar to rbs operon repressor RbsR Sca_2424 2499224 - 2499748 + | hypothetical protein Sca_2425 2499992 - 2500834 + | hypothetical protein TERM 3093 2500857 - 2500900 + T 100 -13.4 -5.76949 | TATACATGCTATTTT GACAAGATTGTACTTCTCTA CATA TAGAGAGGGATAGTCTTGTC TTTTTTTTAAAAATA TERM 3094 2500953 - 2500916 - T 100 -14.4 -3.90048 | opp_overlap 2500922 2500925, overlap 2500922 TTTTTTTTAAAAATA GAAAAACAAGGAAGGA TAGTGC TCCTTCCTTGTTCCTC AGCCTATATTACCAT TERM 3095 2500922 - 2500947 + T 93 -12 -3.1637 | opp_overlap 2500916 2500922, overlap 2500925 TTAAAAATAGAAAAA CAAGGAAGGA TAGTGC TCCTTCCTTG TTCCTCAGCCTATAT TERM 3096 2500947 - 2500922 - T 100 -12 -5.36364 | opp_overlap 2500922 2500925, overlap 2500916 TTAAAAATAGAAAAA CAAGGAAGGA TAGTGC TCCTTCCTTG TTCCTCAGCCTATAT TERM 3097 2500925 - 2500944 + T 74 -7.9 -3.72324 | opp_overlap 2500922 2500916, overlap 2500922 AAAATAGAAAAACAA GGAAGGA TAGTGC TCCTTCC TTGTTCCTCAGCCTA Sca_2426 2501499 - 2500999 - | hypothetical protein TERM 3098 2501713 - 2501681 - R 95 -7.8 -5.4492 | opp_overlap 2501698 TATATATAGAAAAAA TCCGACAGAAATCA TCTTT CGATTCCCATCGGA TTTAAGGTTTAGTCT Sca_2427 2502099 - 2501722 - | hypothetical protein TERM 3099 2502531 - 2502504 - R 86 -7.1 -5.1523 | gap 1 GTGATAATACAAAAA GAGCCGGAAACA ATTGA TGT-TCCAGCTC TAAAAATTAGTTCTA Sca_2428 2503044 - 2502595 - | hypothetical protein Sca_2429 2505914 - 2503086 - | hypothetical protein, similar to phage infection protein TERM 3100 2505319 - 2505329 + g 70 -3.2 -4.91084 | ACAGAATTATTGGCT GTAG AAA CTGC TTTTTGAATTTTATT Sca_2430 2506129 - 2508255 + | hypothetical protein TERM 3101 2508267 - 2508321 + T 83 -9 -4.14725 | gap 1, opp_overlap 2508265 2508272, overlap 2508272 ATAATAATATTAATG AAAAAGCTTCATTCAA-TGACTCAA TTATTT TTGAGTTTCTTGAATGAAGCTTTTA TTTATACTTTAAATC TERM 3102 2508272 - 2508316 + T 100 -8.9 -5.06089 | gap 1, opp_overlap 2508265 2508272, overlap 2508267 AATATTAATGAAAAA GCTTCATTCAA-TGACTCAA TTATTT TTGAGTTTCTTGAATGAAGC TTTTATTTATACTTT TERM 3103 2508316 - 2508272 - T 82 -6.7 -4.92777 | gap 1, opp_overlap 2508272 2508267, overlap 2508265 AATATTAATGAAAAA GCTTCATTCAA-TGACTCAA TTATTT TTGAGTTTCTTGAATGAAGC TTTTATTTATACTTT Sca_2431 2510183 - 2508330 - | hypothetical protein TERM 3104 2509964 - 2509975 + g 74 -3.6 -5.15381 | CTTGAATACGATTGA GCTG CTCT CGGC TTTTTTGAATATATT TERM 3105 2510014 - 2510024 + g 70 -5.4 -4.53439 | TGATGCGTTTTCTCT GAAC TTT GTTC TTTATTTAGATTTGG Sca_2432 2510426 - 2510848 + | MarR family regulatory protein TERM 3106 2510881 - 2510858 - f 70 -5.3 -4.62392 | opp_overlap 2510852 2510858 CAATAAGCAAATAAA GTAGCTGGT CAGAAT ATCAGCTAC TTAATCTTTAACCTA Sca_2433 2510961 - 2512316 + | hypothetical protein TERM 3107 2512377 - 2512343 - f 70 -8.1 -3.09968 | gap 1, opp_overlap 2512343, overlap 2512346 TATTTAATTTTAATA GAAGCA-CAGCAAA TACAACCT TTTGCTGATGCTTC TTTTTTAATCTAACT TERM 3108 2512343 - 2512377 + F 93 -8.1 -5.22312 | gap 1, opp_overlap 2512343 2512346 TATTTAATTTTAATA GAAGCA-CAGCAAA TACAACCT TTTGCTGATGCTTC TTTTTTAATCTAACT Sca_2434 2512530 - 2513264 + | hypothetical protein TERM 3109 2513285 - 2513321 + T 100 -15.4 -4.16785 | gap 1, opp_overlap 2513285 GTAAAAAACAAAAAA GCGTGTGCGGAA-TATC TGAT GATAATTCCGTACACGC TTTAATTTATAATAT TERM 3110 2513321 - 2513285 - T 100 -13.2 -6.04324 | gap 1, opp_overlap 2513285 GTAAAAAACAAAAAA GCGTGTGCGGAA-TATC TGAT GATAATTCCGTACACGC TTTAATTTATAATAT Sca_2435 2514008 - 2513328 - | hypothetical protein Sca_2436 2514866 - 2514033 - | hypothetical protein TERM 3111 2514777 - 2514761 - G 71 -4.3 -4.75288 | overlap 2514762 CGACAGCAAAATAAA CGACGTC ACT GCCGTCA ATAGCGTTTAAAGTA Sca_2437 2515347 - 2515042 - | hypothetical protein Sca_2438 2515609 - 2516460 + | hypothetical protein TERM 3112 2516506 - 2516463 - T 100 -11.3 -4.98061 | opp_overlap 2516469, overlap 2516469 AGATATTAAATAAAA CAGAAATAGAGACGGAAAA ATCGAA TTTTCCGTCTCTATTTTTT ACTTATATTTACTTA TERM 3113 2516469 - 2516500 + T 100 -14.7 -5.3671 | opp_overlap 2516463 2516469 TAAATAAAACAGAAA TAGAGACGGAAAA ATCGAA TTTTCCGTCTCTA TTTTTTACTTATATT TERM 3114 2516500 - 2516469 - T 100 -14.7 -4.59774 | opp_overlap 2516469, overlap 2516463 TAAATAAAACAGAAA TAGAGACGGAAAA ATCGAA TTTTCCGTCTCTA TTTTTTACTTATATT pmi 2517454 - 2516519 - | mannose-6-phosphate isomerase TERM 3115 2517468 - 2517494 + r 72 -6.8 -4.04326 | ATTTTTAACCATCCT TTTATATCATTT TTA AAATGTTATAAA TTTCATCTTTCGTTG fruA 2519421 - 2517469 - | putative fructose phosphotransferase system enzyme fruA TERM 3116 2519504 - 2519476 - R 100 -7.6 -5.66684 | opp_overlap 2519478 2519481 TAAGGCATAAAAAAA GATAATTGCC GTTACTAGT GGCAATTATC CCTTAATCAAGTTTA TERM 3117 2519478 - 2519502 + r 70 -8.7 -2.57092 | opp_overlap 2519476, overlap 2519481 AGGCATAAAAAAAGA TAATTGCCGTT ACT AGTGGCAATTA TCCCTTAATCAAGTT Sca_2441 2521371 - 2519500 - | putative transcriptional regulator Sca_2442 2523403 - 2521397 - | hypothetical protein TERM 3118 2522792 - 2522782 - G 70 -5.4 -4.36595 | TATCGAAATCTAAAA TCCA TTC TGGA ACAATTATACTTACT TERM 3119 2523681 - 2523714 + r 93 -8.4 -5.09173 | opp_overlap 2523681, overlap 2523675 TCCCACAAATAAAAA GTAAGGTTTTCA CTTTTTACTT TGAAAACCTTAC TTTTTTGAGATATTA TERM 3120 2523714 - 2523681 - R 95 -8.4 -5.38054 | opp_overlap 2523675 2523681 TCCCACAAATAAAAA GTAAGGTTTTCA CTTTTTACTT TGAAAACCTTAC TTTTTTGAGATATTA Sca_2443 2525158 - 2523758 - | hypothetical protein TERM 3121 2523892 - 2523874 - G 70 -9 -2.97743 | overlap 2523873 2523876 CACCATGAACTAAAC CATCAATA CCA TATTGATG CGGATTTAATATCGC TERM 3122 2525367 - 2525311 - R 100 -13.5 -5.85011 | gap 1 TAAAAATTAAAAAAA GACTATACTGCTGATTGAAACAAC TTCGATAATT ATTGTTTCAATCAGC-GTACAGTC AAACATCGTTATTGT Sca_2444 2527109 - 2525388 - | hypothetical protein TERM 3123 2526251 - 2526265 + g 74 -5 -4.79949 | overlap 2526252 TAGCTTTAGTTTTGC TCGTTA CTG TAACGG TTGTTTTTTTGACAG TERM 3124 2526570 - 2526582 + g 85 -4.1 -5.65496 | overlap 2526567 2526566 ATTATTTGGTTTTGT TGCTG CAG CAGTA TTTTTCTTTTTAATC TERM 3125 2528570 - 2528592 + G 74 -4.8 -4.77079 | overlap 2528572 GAAATTATTAGTAGG TGCCGCCA CAATGAT TGGCGGTG TTTTGTTAGTCTCTG TERM 3126 2528572 - 2528590 + G 71 -7.4 -3.9902 | overlap 2528570 AATTATTAGTAGGTG CCGCCA CAATGAT TGGCGG TGTTTTGTTAGTCTC pbp4 2527413 - 2528642 + | penicillin binding protein 4 TERM 3127 2528837 - 2528827 - g 76 -3.2 -5.34055 | AGAAATATGAAAAAA TGGA AGT CCCA AATAAAGGTCGAGAC Sca_2446 2528691 - 2530109 + | hypothetical protein TERM 3128 2530118 - 2530162 + F 81 -7.3 -4.64048 | TGCTTAACTAAATCG CACTCCCTTATAATAGATATT CGA AATGAATGCTATAAGGGAGTG TTTATTTATATCCTC TERM 3129 2530474 - 2530464 - g 73 -5.4 -4.56597 | opp_overlap 2530464 TGCTTTTTCTAAAAA CTTC AGT GAAG TTTCTCCAAATAATA Sca_2447 2530303 - 2530869 + | hypothetical protein TERM 3130 2532037 - 2532019 - g 73 -6 -4.43477 | TTTAGCCAATCAAAA CGCTTTAT ATT ATCAAGCG CCAAAATCTATTATT Sca_2448 2530880 - 2532244 + | hypothetical protein TERM 3131 2532269 - 2532302 + T 95 -11.3 -3.74056 | opp_overlap 2532269 TTCGTAAATAAAAAA CTCATCAACTTATTA ACTT TAATAAATTGATGAG TTTCAATAGTTATTA TERM 3132 2532302 - 2532269 - T 100 -13.5 -5.63517 | opp_overlap 2532269 TTCGTAAATAAAAAA CTCATCAACTTATTA ACTT TAATAAATTGATGAG TTTCAATAGTTATTA TERM 3133 2532330 - 2532374 + T 100 -13.2 -5.75538 | opp_overlap 2532332 2532334 TTAATTGTTTCATAG TATAGTGAATTCCAAAAAAG ATGGG CTTTTTGGGGGTTCACTATA TTTTTATTTTTTCAC Sca_2449 2533953 - 2532433 - | hypothetical protein TERM 3134 2533403 - 2533391 - G 77 -2.7 -5.4505 | TTTGTTAATAAAAAA TAACC GAT GATTA AACATAACACTGCTG Sca_2450 2535147 - 2534419 - | hypothetical protein TERM 3135 2534504 - 2534536 + g 74 -10.1 -2.64933 | overlap 2534506 ATTGGATCTATTTTA TATTGTTCGTCTATT TTT GATAGAGGAACAATA TGGTGTACATGAATG Sca_2451 2536200 - 2535721 - | hypothetical protein TERM 3136 2536617 - 2536591 - R 100 -9.5 -5.60993 | opp_overlap 2536593 TTTCCCACAAAAAAA GACTCCCGGAT GTCAT ATCCAGAAGTC ACTTCATAAACTTAT Sca_2452 2537429 - 2536638 - | hypothetical protein TERM 3137 2536803 - 2536793 - G 70 -5.4 -4.40605 | AGTGAGAAAGATAAA TACG TTT CGTA CTGCCCGTAATGACA TERM 3138 2537733 - 2537712 - R 100 -12.3 -5.00642 | CAAGCTACACAAAAA GCGCACCCT TGAA AGGATGCGC TTAGAAATAGAATCA Sca_2453 2538544 - 2537756 - | hypothetical protein Sca_2454 2539875 - 2538541 - | hypothetical protein TERM 3139 2539726 - 2539746 + g 81 -2.5 -5.64304 | overlap 2539719 TTCCGAATTCGGCTT GCCGATGGT TTT ATCATTTGC TTTTTTATTGTCTTG Sca_2455 2541709 - 2539865 - | two-component sensor histidine kinase TERM 3140 2541546 - 2541566 + g 90 -9.1 -4.46215 | overlap 2541548 ATATTAATCTCGATT TGTTTCGCA TAT TGCGAAATA TTATTTTTAAATGTC TERM 3141 2541548 - 2541564 + g 81 -9.5 -3.82353 | overlap 2541546 ATTAATCTCGATTTG TTTCGCA TAT TGCGAAA TATTATTTTTAAATG vicR 2542422 - 2541721 - | putative response regulator TERM 3142 2542257 - 2542233 - G 77 -8.5 -3.9712 | GGACTTCACGACAAA CTTCCATGCCG TCA CGTCCTGGAAG CATAATATCTAAAAG Sca_2457 2542551 - 2542652 + | hypothetical protein TERM 3143 2542812 - 2542791 - f 100 -8.7 -5.73978 | opp_overlap 2542791 AGGACAAATAAAAAA TGCCCACCC TATT GGATGAGCA TTATACGGTCTCGAC Sca_2458 2543077 - 2543970 + | hypothetical protein TERM 3144 2544025 - 2544057 + T 100 -18 -3.91196 | opp_overlap 2544025 ACTTATATATAACAA TAGAGGTGCTTATC ACAGC GATAAGCACCTCTA TTTAATGTATCTGAG TERM 3145 2544057 - 2544025 - T 100 -18.7 -3.93398 | opp_overlap 2544025 ACTTATATATAACAA TAGAGGTGCTTATCA CAG CGATAAGCACCTCTA TTTAATGTATCTGAG purA 2545360 - 2544074 - | Adenylosuccinate synthase TERM 3146 2545277 - 2545266 - G 76 -5.8 -4.57569 | opp_overlap 2545266 TTACCGCCTGAAAAA CGTG TAAT CACG TCTGCTTGTTCTGCT TERM 3147 2545701 - 2545676 - R 100 -9.1 -5.56264 | opp_overlap 2545675 2545678 TTTAAATATAAAAAA GAGGCTGAAAC TTTA ATTTCAACCTC AATTAATTATTGGCA dnaC 2547136 - 2545739 - | Replicative DNA helicase TERM 3148 2547039 - 2547011 - G 76 -6.7 -4.36914 | opp_overlap 2547014, overlap 2547012 2547014 TGCGCCTCTATAAAA GGACTCAGGAAGT AAG ACTCCCTGAGTTT CCCCGATGAGCTGCG TERM 3149 2547038 - 2547012 - G 77 -10.2 -3.21934 | opp_overlap 2547014, overlap 2547011 2547014 GCGCCTCTATAAAAG GACTCAGGAAGT AAG ACTCCCTGAGTT TCCCCGATGAGCTGC TERM 3150 2547014 - 2547036 + g 82 -10.6 -3.55563 | opp_overlap 2547014 2547012 2547011 GCCTCTATAAAAGGA CTCAGGAAGT AAG ACTCCCTGAG TTTCCCCGATGAGCT TERM 3151 2547036 - 2547014 - G 90 -12.8 -3.1733 | opp_overlap 2547014, overlap 2547012 2547011 GCCTCTATAAAAGGA CTCAGGAAGT AAG ACTCCCTGAG TTTCCCCGATGAGCT rplI 2547617 - 2547171 - | 50S ribosomal protein L9 TERM 3152 2547498 - 2547516 + g 76 -4.6 -5.10461 | TTTTAAATTACCTGG TGTTGC TTCAACT GCAACA TTTTTCTTGAATAAG Sca_2462 2549581 - 2547614 - | hypothetical protein Sca_2463 2550507 - 2549596 - | hypothetical protein Sca_2464 2550745 - 2550852 + | hypothetical protein TERM 3153 2551386 - 2551410 + T 100 -9.4 -5.3236 | opp_overlap 2551386 GCATATACTGATATA CCGATTATCT GGATA AGGTAATCGG TTTTTTGTGCATTCT TERM 3154 2551488 - 2551455 - T 86 -5.3 -5.63517 | overlap 2551457 TTGGGAAATAAAAAA GATGAGTGCTGTATT GGTA AGTACAGCACTCAAA GTGGTAGGTAAATAT TERM 3155 2551486 - 2551457 - T 100 -12.3 -4.45696 | overlap 2551455 GGGAAATAAAAAAGA TGAGTGCTGTATT GGTA AGTACAGCACTCA AAGTGGTAGGTAAAT serS 2552847 - 2551561 - | Seryl-tRNA synthetase TERM 3156 2551771 - 2551803 + g 75 -7.2 -4.24745 | gap 1, opp_overlap 2551775, overlap 2551775 TGCACGGCGTGCTTG GAAATCTG-TCATGT TAGA ACATGAGCTGATTTC TTTGTATTCATCATA TERM 3157 2552666 - 2552684 + g 76 -10.4 -2.68607 | overlap 2552665 TTGTTGCGTTTCTTC TCAGCAAT TTC ATTGCTGA CTCTGTTTCTTTCCG TERM 3158 2552952 - 2552926 - R 100 -17.4 -5.9667 | opp_overlap 2552946 AAAAACATAAAAAAA TACCACGCCCCT ACA AGGGACGTGGTA CTACGTGTTGCCACC hutH 2554742 - 2553228 - | Histidine ammonia-lyase Sca_2467 2555005 - 2555499 + | hypothetical protein TERM 3159 2555517 - 2555542 + F 100 -9.8 -5.47159 | TAATTTGTTTATTGC GCTGAAGTCT TTATCC AGACTTCGGC TTTTTTATGTTCAAA Sca_2468 2555823 - 2556686 + | hypothetical protein TERM 3160 2556687 - 2556741 + T 100 -13.9 -3.15756 | gap 1, opp_overlap 2556692, overlap 2556692 GGCGAAGACGCATAA AAAAAGAAGCTTTCTGC-TTGCTGAT GATA ACCAGCACTGCAGAAAGCTTCTTTTC ATTTATCTATTATTC TERM 3161 2556692 - 2556736 + T 100 -13.8 -4.66057 | gap 1, opp_overlap 2556692, overlap 2556687 AGACGCATAAAAAAA GAAGCTTTCTGC-TTGCTGAT GATA ACCAGCACTGCAGAAAGCTTC TTTTCATTTATCTAT TERM 3162 2556736 - 2556692 - T 100 -16 -5.65177 | gap 1, opp_overlap 2556692 2556687 AGACGCATAAAAAAA GAAGCTTTCTGC-TTGCTGAT GATA ACCAGCACTGCAGAAAGCTTC TTTTCATTTATCTAT gyrA 2559429 - 2556751 - | DNA gyrase subunit A TERM 3163 2558661 - 2558649 - G 74 -7.7 -3.89524 | opp_overlap 2558657, overlap 2558657 ATGGGATTTCAGAAA CAACG ATA CGTTG GCGACCGCCGCCACG gyrB 2561398 - 2559476 - | DNA gyrase subunit B recF 2562532 - 2561420 - | DNA repair and genetic recombination protein Sca_2472 2562753 - 2562529 - | hypothetical protein TERM 3164 2563088 - 2563048 - R 100 -13.6 -4.89339 | opp_overlap 2563053, overlap 2563053 AATCAGCTATAAAAA TAAAATAAGCAGAAACCC GACTT GGATTTCTGCTTATTTTT AAATGGTGTCACCTT TERM 3165 2563083 - 2563053 - R 100 -13.5 -5.35224 | opp_overlap 2563053, overlap 2563048 GCTATAAAAATAAAA TAAGCAGAAACCC GACTT GGATTTCTGCTTA TTTTTAAATGGTGTC TERM 3166 2563053 - 2563083 + r 100 -12 -4.69664 | opp_overlap 2563053 2563048 GCTATAAAAATAAAA TAAGCAGAAACCCG ACT TGGATTTCTGCTTA TTTTTAAATGGTGTC dnaN 2564253 - 2563117 - | DNA polymerase III beta subunit dnaA 2565869 - 2564508 - | chromosomal replication initiator protein TERM 3167 2565329 - 2565339 + g 73 -6.8 -4.30995 | ATGTATAAATCACTT TCGC ATC GCGA TTATTTTCTAAAACG