TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.591807 %AT, 1805748 nt, 12333 terms. Intergenic: 0.652469 %AT, H2T: 335905 nt, 2801 terms; T2T: 62856 nt, 1401 terms; H2H: 67244 nt, 1036 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|169832377|ref|NC_010380.1| Streptococcus pneumoniae Hungary19A-6, complete genome (length 2245615) dnaA 197 - 1558 + | chromosomal replication initiator protein DnaA dnaN 1717 - 2853 + | DNA polymerase III, beta subunit TERM 1 2855 - 2886 + F 75 -9.6 -2.66316 | gap 1, opp_overlap 2855 2860, overlap 2860 TTCGTACAAATTAAG TGAAAGAGGTTGAGC CTG GCTC-GCCTCTTTTA TGATATAATCGAAAA TERM 2 2860 - 2881 + F 80 -7.3 -4.52047 | gap 1, opp_overlap 2860 2855, overlap 2855 ACAAATTAAGTGAAA GAGGTTGAGC CTG GCTC-GCCTC TTTTATGATATAATC SPH_0003 2918 - 3112 + | hypothetical protein ychF 3196 - 4311 + | GTP-binding protein YchF TERM 3 4334 - 4356 + F 74 -6.3 -4.4267 | opp_overlap 4335 4350, overlap 4327 4335 TAAATGGTGTCAATT AGGTTGGAA AAAAA TTCCAACCC TTTTGGCTTTTGAAA TERM 4 4355 - 4335 - f 75 -9.8 -2.7186 | opp_overlap 4335 4334 4327, overlap 4350 AAATGGTGTCAATTA GGTTGGAA AAAAA TTCCAACC CTTTTGGCTTTTGAA TERM 5 4335 - 4355 + F 79 -9.8 -3.24879 | opp_overlap 4335 4350, overlap 4334 4327 AAATGGTGTCAATTA GGTTGGAA AAAAA TTCCAACC CTTTTGGCTTTTGAA TERM 6 4928 - 4918 - g 70 -2.6 -5.1523 | TTTACAAGAGAAAAA TTTT GAG AAAA CAATGCAGAGGTATA pth 4382 - 4951 + | peptidyl-tRNA hydrolase TERM 7 5205 - 5218 + G 71 -3.8 -4.87807 | overlap 5173 TTTTGGTAGATGATG CTCC TATGGT GGAG TTTTTGATGTCTTCA TERM 8 6665 - 6655 - g 70 -5.4 -4.43911 | AAAGGCCAAGCAAAA GGTT AAG AACC AGGTAGAGGATATAG mfd 4952 - 8461 + | transcription-repair coupling factor SPH_0007 8519 - 8785 + | ribosome-associated heat shock protein implicated in the recycling of the 50S subunit SPH_0008 8778 - 9146 + | septum formation initiator SPH_0009 9151 - 9273 + | hypothetical protein SPH_0010 9266 - 10534 + | beta-lactamase class A TERM 9 11323 - 11341 + G 77 -8.2 -4.16943 | opp_overlap 11319 11318 CTTACAAAAGCTCAG TTTGCTGA AGT TCAGCAGA TTTTAAAATCTAAAA TERM 10 11693 - 11719 + G 71 -6.1 -4.14392 | gap 1, opp_overlap 11711, overlap 11682 ACTCTGCTCTTATTA TTGAG-CAATTT GGTG AAATTGTCTCAA TTTTGGGAATTGCGA SPH_0011 10531 - 11808 + | tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) hpt 11812 - 12354 + | hypoxanthine phosphoribosyltransferase TERM 11 12530 - 12518 - g 71 -6.3 -4.30987 | AGTTGGTACAAGAAA TTACC GAT GGTAA TGTAAAAGAATTAAC TERM 12 13399 - 13409 + G 73 -6.8 -4.25283 | GATCCTGCCCTTTTG CGTC CAG GACG TTTTGATAGAAAAGT hflB 12370 - 14328 + | ATP-dependent metallopeptidase HflB TERM 13 14335 - 14352 + F 100 -11.3 -5.28826 | opp_overlap 14329 GAAAAATAACCCTGA GAGAGGC TGGA GCCTCTC TTTTTTGTGCAGTTT SPH_0014 14450 - 14929 + | competence-specific global transcription modulator TERM 14 15141 - 15130 - f 77 -3 -5.52986 | ACTTGATGAAAAAAA GTTT AAAA AAAC TTAAAAATCTTCAAA TERM 15 15326 - 15312 - f 95 -8.6 -4.89605 | GAAAAAAACAATAAA TCTGTC AGT GACAGA AATGAGTGAGAACTC TERM 16 16359 - 16374 + F 76 -7.6 -3.90112 | GACATCCCTCTGACC GCTCTA GAGA TAGAGC TTTCCTTCGGGACAG TERM 17 17428 - 17409 - f 91 -12.2 -3.62096 | opp_overlap 17408 17407 CGGCAGGAGGGCAAA CCGAAGAG TTTA CTCTTCGG GGTTGTAGGACTGCA TERM 18 20326 - 20339 + F 89 -6.7 -5.60689 | opp_overlap 20326 GAGTAATTTAGTTAA GAGGT TTAG ACCTC TTTTTTATTATGTAA TERM 19 20442 - 20464 + F 100 -9.2 -5.15117 | opp_overlap 20446 AAAAGCTAAGCTTGA GAAAGGACAA ATT TCGTCCTTTC TTTTTTGAAGTTTTC SPH_0024 21502 - 21738 + | hypothetical protein purA 21927 - 23255 + | adenylosuccinate synthetase TERM 20 23374 - 23393 + T 100 -9.3 -5.15381 | overlap 23389 23391 AATAATCTCCCTTAA CTCCACC CAATCA GGTGGAG TTTTTTAGCTCTATT SPH_0026 24645 - 23497 - | integrase TERM 21 24518 - 24533 + g 85 -2.6 -5.72118 | GCTTGAGGGAGAGTT GTGAAA CCAC TTTTAC TTTTTTCTCTTTTTT SPH_0028 25616 - 24816 - | hypothetical protein TERM 22 24886 - 24907 + g 71 -5.2 -4.58424 | overlap 24875 TTACGAGAAACGACT CTCTCAGT TTCGAT ATTGAGAG TTTTATATGGTCCTC TERM 23 25074 - 25093 + g 72 -3.6 -5.10877 | overlap 25077 ATTTGATGGCTCCGG CAATAGAT GAAC ATCTACTG TTTTTAATTTATTGT SPH_0029 26498 - 25743 - | phage transcriptional repressor TERM 24 25842 - 25859 + g 91 -6.3 -5.38054 | gap 1, opp_overlap 25842 25844, overlap 25836 CTTGTTATTGATAGA GACGAGTC TGA GAC-CGTC TTTTTCTTTATAGAC TERM 25 26598 - 26612 + H 81 -10 -3.4178 | opp_overlap 26591 AAAAACACTTGACAT TGCGGT TTA ACCGCA TTATAATAGAGTCAT SPH_0030 26672 - 26878 + | hypothetical protein TERM 26 26884 - 26868 - f 86 -10.9 -3.31726 | overlap 26866 TTTTTTTACACAACA TTGCGGT TTA ACCGCAA CTAGAAAAGAATACT SPH_0031 26949 - 27083 + | hypothetical protein TERM 27 27140 - 27114 - g 89 -9.5 -4.15832 | ACGAACTAGAAAGAA CAGCCCTCAAT GAAGT ATTGAGGACCG TGGCATATATTGCTG SPH_0033 27095 - 27223 + | hypothetical protein SPH_0032 27863 - 27186 - | hypothetical protein SPH_0034 27918 - 28631 + | hypothetical protein TERM 28 28769 - 28728 - g 90 -7.5 -5.19879 | gap 1 GTCGAAATAGAAAAA GATAGTGATCACTATCCA GAGTTGA TGGAT-GTGAACACTACC TGCGAATTTCTAGGA TERM 29 28886 - 28867 - g 87 -8.6 -4.6526 | opp_overlap 28867 28869 AGAAATGGTCAAAAA GAGCCATC AAAG AATGGCTC TCTAATCAAATATAA SPH_0035 28644 - 28901 + | phage protein SPH_0036 28987 - 29307 + | hypothetical protein TERM 30 29287 - 29298 + F 73 -4.4 -4.91109 | opp_overlap 29287 CCAGAACCTAAACAG TCTG CAAT CAGA TTTTTGTAATGAGGA SPH_0037 29323 - 29616 + | hypothetical protein TERM 31 30055 - 30019 - g 100 -14.8 -3.65261 | gap 1, opp_overlap 30019, overlap 30015 GAACAACGAAAGTAA CGTTACTGATAACGTTA TGGA TAACGTTA-CAGTAACG CATGGTAACGCACTA TERM 32 30415 - 30403 - g 71 -4.1 -4.90381 | GTCAAGACAACAAAA CGATA AAA CATCG GAACAGGAGGTAAGG SPH_0038 29600 - 30448 + | hypothetical protein SPH_0039 30436 - 30594 + | hypothetical protein SPH_0040 30588 - 31358 + | hypothetical protein TERM 33 31530 - 31543 + G 73 -6.7 -4.16943 | GCAAGGCATTGAGAG GTTCC TTTG GGAAC TTTTACCCTGTCGAG SPH_0041 31373 - 31567 + | hypothetical protein SPH_0042 31567 - 31794 + | hypothetical protein SPH_0043 31979 - 32170 + | hypothetical protein SPH_0044 32160 - 32492 + | hypothetical protein SPH_0045 32532 - 32996 + | hypothetical protein TERM 34 33052 - 33080 + F 100 -9.7 -5.60993 | opp_overlap 33056, overlap 33056 TAGATTGATACTATC CAAAGCACTGAGA AAA TCTTAGTGCTTTA TTTTTTTGTGAAAGG TERM 35 33076 - 33056 - f 73 -8.3 -3.70149 | opp_overlap 33056 33052 TTGATACTATCCAAA GCACTGAGA AAA TCTTAGTGC TTTATTTTTTTGTGA TERM 36 33056 - 33076 + F 100 -10.5 -5.27709 | opp_overlap 33056, overlap 33052 TTGATACTATCCAAA GCACTGAGA AAA TCTTAGTGC TTTATTTTTTTGTGA SPH_0046 33105 - 33647 + | prophage LambdaSa2, site-specific recombinase phage integrase family protein TERM 37 34366 - 34401 + G 80 -4.3 -5.30575 | opp_overlap 34354 AAATAAATTTAAATT TAGAAAATCGGAATA TTAATT TATTTTGATTTTTTA TTTTTTGGATTTTTG SPH_0047 34077 - 34394 + | HNH endonuclease domain-containing protein SPH_0048 34537 - 35016 + | hypothetical protein TERM 38 35325 - 35346 + G 72 -8.7 -3.49568 | opp_overlap 35325, overlap 35323 AAGATTTTGAAGAAA GGCGTCTCA TTCA TGAGGTGCC TATTATTGTACCTCG SPH_0049 35009 - 36721 + | putative phage terminase, large subunit TERM 39 37134 - 37124 - g 79 -5.4 -4.86731 | opp_overlap 37108, overlap 37106 GGTTTGCAAAGAAAA CCAT ATC ATGG ACTGCAGAGAGAGTT SPH_0050 36946 - 37872 + | hypothetical protein SPH_0051 37919 - 38461 + | HK97 family phage prohead protease SPH_0052 38476 - 39729 + | hypothetical protein TERM 40 39792 - 39823 + G 77 -6.1 -4.62783 | gap 1 AAGAAATGGTTGAAG TTGA-TGTCGAAGA AGAAA TCTTTGACACTCAA TTTTTAAGCTACATA SPH_0053 39755 - 40090 + | hypothetical protein SPH_0054 40087 - 40392 + | phage head-tail adaptor, putative TERM 41 40463 - 40445 - g 83 -3.2 -5.63504 | opp_overlap 40445 AATCCTAGAAAAAAA CACTTT AAAATCA AAAGTG TTCTATATGGAACGT TERM 42 40608 - 40639 + G 82 -8.2 -4.60797 | TATCACAAGAAGAAA TTAGACAGCATTGA GGAA TTGATGTTGTCTAA TTTTATGTGTGAACC SPH_0055 40392 - 40739 + | hypothetical protein SPH_0056 40726 - 41070 + | hypothetical protein TERM 43 41616 - 41606 - g 79 -3.2 -5.38047 | GATTCAGATAAAAAA CCTG TTT CAGA AATTGTATGGCGTGA SPH_0057 41084 - 41752 + | phi13 family phage major tail protein TERM 44 41806 - 41832 + G 75 -8 -4.00532 | opp_overlap 41806 41813, overlap 41810 GTTATGGTGAAGAAA GAGAGTACACTG GAA CAGTGCGCTTTC TTTACTCTTTACCAG TERM 45 41810 - 41828 + G 71 -5.2 -4.59293 | opp_overlap 41806 41813, overlap 41806 TGGTGAAGAAAGAGA GTACACTG GAA CAGTGCGC TTTCTTTACTCTTTA SPH_0058 41754 - 42230 + | hypothetical protein SPH_0059 42269 - 42397 + | hypothetical protein TERM 46 43833 - 43810 - g 85 -12.6 -3.17229 | opp_overlap 43808 43807 43815, overlap 43796 43808 43815 ATGCTACTAGTAAGA CAGAAGCAAT AAGA ATTGCTTCTG AAGTTTTCGGAAATA TERM 47 44241 - 44266 + G 95 -14.1 -3.07222 | overlap 44233 GTCGGAATTGTCGTA GCGGCAATAGT TGCT GCTATTGCCGC TATTACACTCATCAT TERM 48 44565 - 44590 + G 77 -6.1 -4.54253 | overlap 44567 CTTTCCAATTTATGG TCTGGCCTGGT CTCA ACCGGGTCAAA TTTGTTTAATAATTT SPH_0060 42417 - 45155 + | prophage LambdaSa04, tail tape measure family protein TERM 49 45566 - 45606 + G 85 -9.2 -4.26903 | gap 1, opp_overlap 45573, overlap 45567 45573 GATACACAGAGATTG ACAAGAAGTGGAACCTTGA CCGT TCAAGGTTCTGC-TCTTGC TTTTCCTAAAATCAC TERM 50 45567 - 45605 + G 85 -12.7 -3.1582 | gap 1, opp_overlap 45573, overlap 45566 45573 ATACACAGAGATTGA CAAGAAGTGGAACCTTGA CCGT TCAAGGTTCTGC-TCTTG CTTTTCCTAAAATCA TERM 51 45573 - 45600 + G 85 -11.4 -3.43546 | opp_overlap 45573, overlap 45567 45566 AGAGATTGACAAGAA GTGGAACCTTGA CCGT TCAAGGTTCTGC TCTTGCTTTTCCTAA SPH_0061 45152 - 45874 + | hypothetical protein TERM 52 45921 - 45906 - g 72 -9 -3.3862 | opp_overlap 45913 ATAAAGATGTGAGAA CCGTTC GGTG GAACGG GGAGCCACTTCATGA TERM 53 49984 - 49955 - g 75 -9.9 -3.37761 | ACCGCAACAGATCAA GCCAAGACGGTCA TCAT TGGCCGCCATGGC CCTCAAGTAGGCGGT SPH_0062 45875 - 54991 + | hypothetical protein SPH_0063 55085 - 55288 + | hypothetical protein SPH_0064 55291 - 55641 + | hypothetical protein TERM 54 55735 - 55751 + G 70 -5.9 -4.36914 | CTAGCACTGATTGTC TCAATGG AAA TCATTGA TTTTGTGACAGGGAC SPH_0065 55651 - 56067 + | putative holin 1 SPH_0066 56071 - 56403 + | phage holin TERM 55 56437 - 56462 + G 70 -8.3 -3.29511 | gap 1 AACAGACTACGTACA GGCT-TGCCCCA GGT TGGGGTGCAGCC TTATCGACAAGTACA TERM 56 56541 - 56559 + G 76 -7.4 -4.20712 | opp_overlap 56541 56544, overlap 56544 TTATCACTATAGAAA GGACCCTG AAC TAGGGTTC TTTTCACATGTTGTC SPH_0067 56407 - 57363 + | lytic amidase (N-acetylmuramoyl-L-alanine amidase) TERM 57 57382 - 57365 - T 83 -7.1 -4.75288 | opp_overlap 57364 57367 TTACAGTAAAATAAA TAGAAAG GAAA CTTTCTA AATTGTTCTTTCACC TERM 58 57396 - 57415 + T 100 -11.4 -5.69793 | TAAATTGTTCTTTCA CCGCAGGC TCAG GCTTGCGG TTTTTTATTTGCTCT TERM 59 57506 - 57489 - T 89 -6.3 -5.61881 | opp_overlap 57488 57489 57491 TGTCAAAAATAAAAA CAGTGAC CGAA ATCACTG CTTATCAGTTGTAGC SPH_0068 57681 - 57526 - | hypothetical protein TERM 60 58084 - 58072 - H 93 -4.1 -6.06723 | overlap 58074 TTTTTCAAAAAAAAA TAGAC CTT GTCCA GAGGTCGGGGAGTTG TERM 61 58171 - 58193 + H 80 -6.3 -4.6821 | gap 1, opp_overlap 58162 58173, overlap 58173 AATAATCTCCCTATA GA-GTCACCG CATT CGGTGGCTTC TTTTGTGTTGGGATT TERM 62 58173 - 58190 + H 93 -9.1 -4.44211 | opp_overlap 58173, overlap 58171 TAATCTCCCTATAGA GTCACCG CATT CGGTGGC TTCTTTTGTGTTGGG SPH_0069 58253 - 58720 + | tRNA-specific adenosine deaminase TERM 63 58881 - 58856 - T 71 -5.5 -4.62069 | opp_overlap 58856 CGTGCACTTTAAAAA CCCTTTAAAAT CAAC ACTTTAAGGGG TTTTTGTTTGTCTTG TERM 64 58856 - 58881 + T 84 -5.5 -5.4659 | opp_overlap 58856 CGTGCACTTTAAAAA CCCTTTAAAAT CAAC ACTTTAAGGGG TTTTTGTTTGTCTTG SPH_0070 60071 - 58929 - | integrase TERM 65 59702 - 59720 + g 82 -6.1 -4.91109 | overlap 59683 GAGATCTCCCATCTT GTAATAG TTGAT CTATTAC TTTTTGTAATAAACG TERM 66 60147 - 60184 + r 93 -4.1 -6.01187 | TTCCTATACATGATT TCCTCACACTCAAGATT TGGC GATGACGAGTGTGGGGA TTTTTTTATTTCGTT SPH_0071 60540 - 60190 - | hypothetical protein TERM 67 60305 - 60324 + g 95 -6.4 -5.55695 | overlap 60315 ACAGCTCCACCAACG GCCTTTCC AACA GAAAAGGC TTTTTTGTCTTGTTG TERM 68 60448 - 60462 + g 88 -2.8 -5.98781 | TTCAAGTTCACGTTC TCTCTG CTC TGGAGA TTTTTTTTGGTTATC SPH_0072 60934 - 60554 - | hypothetical protein SPH_0073 61312 - 60956 - | repressor protein SPH_0074 61588 - 61773 + | repressor TERM 69 62390 - 62380 - g 79 -6.8 -4.59212 | overlap 62382 AATCAAGGAAACAAA CGTG CAA CACG CAGATGGACATATCA SPH_0075 61775 - 62473 + | phage antirepressor protein TERM 70 62819 - 62803 - g 100 -5.1 -5.77632 | AAAATCAGAAAAAAA CCTCC TGGAAAT GGAGG GAGTCATATATTCAG SPH_0076 62659 - 63000 + | phage replication protein TERM 71 63093 - 63113 + F 75 -8.3 -3.86524 | opp_overlap 63093 AGAGTATACAAAAAA GTATCTGAG AAA CTCAGACAC TTTCTAAAAAAATCT TERM 72 63113 - 63093 - f 100 -10.5 -5.40625 | opp_overlap 63093 AGAGTATACAAAAAA GTATCTGAG AAA CTCAGACAC TTTCTAAAAAAATCT TERM 73 63303 - 63289 - g 73 -2.1 -5.24989 | CGAGAGATGAAAAAA TTGCC TAGTC AGCAA AAATACCTTAGAAAC SPH_0077 63157 - 63423 + | hypothetical protein SPH_0078 63507 - 63959 + | hypothetical protein SPH_0079 63965 - 64666 + | putative Erf protein SPH_0080 64669 - 65661 + | hypothetical protein SPH_0081 65683 - 65859 + | hypothetical protein SPH_0082 65849 - 66394 + | single-stranded DNA-binding protein (SSB) (helix-destabilizingprotein) TERM 74 66891 - 66870 - g 73 -8.1 -3.92324 | opp_overlap 66879 GTGCTTAACAGCAAA GATTTTGGA GTCC CCCAAAATC GGGAACGTGTGTTCA SPH_0083 66420 - 67187 + | hypothetical protein SPH_0084 67192 - 67560 + | hypothetical protein SPH_0085 67595 - 67798 + | hypothetical protein TERM 75 67997 - 67987 - g 75 -5.4 -4.74084 | AAAGCAAAACGAAAA GTGA CTA TCAC ACTTACAATGTCAGC SPH_0086 67852 - 68286 + | hypothetical protein TERM 76 68906 - 68916 + G 76 -6.8 -4.41348 | opp_overlap 68906 AGGATTGATAAGCAA GCCA ATA TGGC TTTATTTGAGGCAGA SPH_0087 68288 - 69025 + | hypothetical protein SPH_0088 69042 - 69254 + | hypothetical protein SPH_0089 69508 - 69666 + | RUS SPH_0090 69668 - 69874 + | hypothetical protein SPH_0091 69924 - 70238 + | hypothetical protein SPH_0092 70240 - 70740 + | hypothetical protein SPH_0093 70740 - 71033 + | hypothetical protein TERM 77 71142 - 71122 - g 75 -2.5 -5.20333 | overlap 71136 GAGGGATAAGAAAAA TCCAAAGAG AAC CATTTTGGA GCAAAAGATTATAGT SPH_0094 71033 - 71425 + | hypothetical protein TERM 78 71442 - 71472 + F 82 -7.8 -4.56597 | opp_overlap 71442 CGTAAAAAATCCAAA GCTTATGTATCT ATAATCA AGATATATAAGC TTTTTCGAAAGGAGA SPH_0095 71497 - 72585 + | hypothetical protein SPH_0097 72566 - 73312 + | hypothetical protein SPH_0096 73454 - 73278 - | hypothetical protein TERM 79 73458 - 73496 + H 73 -8.4 -3.53224 | overlap 73466 CTTTTTTAACATATA CAATGAAATCATAAGTAT AAA ATGCTTGTGATTTTTTTG TTTGAAAGGAGGGTG TERM 80 73466 - 73488 + H 95 -6.4 -5.95539 | overlap 73458 ACATATACAATGAAA TCATAAGTAT AAA ATGCTTGTGA TTTTTTTGTTTGAAA SPH_0098 73516 - 73974 + | hypothetical protein TERM 81 74977 - 75001 + G 75 -8 -4.07246 | TAGTGCTGAGGGAGC GTTAAGAAAC CAGAT GTTTCTTGAC TTTGGTTTGAAATGG SPH_0099 73964 - 75274 + | PBSX family phage terminase large subunit SPH_0100 75287 - 76855 + | phage minor capsid protein SPH_0101 76842 - 77015 + | hypothetical protein SPH_0102 77058 - 78209 + | phage minor capsid protein 2 TERM 82 78231 - 78211 - f 79 -8.3 -3.91858 | opp_overlap 78205 78211 TATATATTTCATAAA GGATTTGTG TTT CACAAGTCC TTTTTTGTGTTTAAA TERM 83 78211 - 78231 + F 100 -10.5 -5.56264 | opp_overlap 78211, overlap 78205 TATATATTTCATAAA GGATTTGTG TTT CACAAGTCC TTTTTTGTGTTTAAA SPH_0103 78348 - 78911 + | phage minor structural protein GP20 TERM 84 78960 - 78946 - g 73 -5.6 -4.4959 | overlap 78940 GCCAAGTAATCAAAA CAACGC AGT GCGCCG CTATGAGAAACAATA SPH_0104 78929 - 79810 + | major capsid protein TERM 85 80032 - 80007 - g 72 -8.3 -3.51032 | ACGCTTGAACCAGAA GATGCCCCATC TGTA GATGATGCATC TCAGGCAACTGTTGA SPH_0105 79821 - 80054 + | hypothetical protein TERM 86 80056 - 80077 + F 93 -9.5 -4.57341 | opp_overlap 80056 80059 80060 80071, overlap 80060 CTGTTGAAGATTAAA TAAGGGGTG GCAA CACCCTTTA TTTTTAAGGGAGGTT TERM 87 80077 - 80056 - f 73 -7.3 -3.92324 | opp_overlap 80056 80060, overlap 80059 80060 80071 CTGTTGAAGATTAAA TAAGGGGTG GCAA CACCCTTTA TTTTTAAGGGAGGTT TERM 88 80060 - 80073 + F 90 -8.1 -4.85782 | opp_overlap 80060 80059 80056 80071, overlap 80056 TGAAGATTAAATAAG GGGTG GCAA CACCC TTTATTTTTAAGGGA TERM 89 80254 - 80242 - g 70 -3.4 -4.86385 | ATTTTGAAAAAGAAA TTGC CTATC GCAA ATCTGCTGTAAAGCT SPH_0106 80097 - 80489 + | hypothetical protein SPH_0107 80479 - 80850 + | putative minor capsid protein 2 SPH_0108 80850 - 81194 + | putative minor capsid protein SPH_0109 81194 - 81601 + | putative minor capsid protein SPH_0110 81598 - 82047 + | major tail shaft protein TERM 90 82061 - 82082 + F 74 -5.8 -4.56597 | gap 1, opp_overlap 82061 AATAGCTTTTGATAA GGGC-GGGC ATTGA GCCTTGCCC TTTTTAACAACAGGA SPH_0111 82112 - 82600 + | hypothetical protein SPH_0112 82613 - 83182 + | phage protein TERM 91 83799 - 83828 + G 79 -11 -3.10012 | overlap 83804 GAAGGGCGTATCACT TTCAACCAATTT TCAAGC AAATTGGTTGAA TTGAATGGTGGCGTT SPH_0113 83175 - 86456 + | phage protein TERM 92 86538 - 86562 + G 71 -9.4 -2.77895 | gap 1, opp_overlap 86536 86538, overlap 86537 CTATCGGGAACAAGA GGAGCG-TATC AACT GATAACGCTCC CTTATTGGGCGTGAA TERM 93 86562 - 86538 - g 75 -9.4 -3.39784 | gap 1, opp_overlap 86538 86537, overlap 86536 CTATCGGGAACAAGA GGAGCG-TATC AACT GATAACGCTCC CTTATTGGGCGTGAA SPH_0114 86486 - 87967 + | tail protein TERM 94 89662 - 89646 - g 71 -9.5 -2.75343 | overlap 89645 GTTAGAGGCTCAAAT GTAACTG ATA CAGTTAC TCTGACAGTTGCAGC TERM 95 94543 - 94533 - g 79 -5.4 -4.88067 | opp_overlap 94533, overlap 94541 AGTGATTTAGAAAAA GCAT ATA ATGC CTTTGTGAAATCAAA SPH_0115 87969 - 94910 + | phage minor structural protein TERM 96 96664 - 96676 + G 75 -7.7 -4.09864 | opp_overlap 96672 96673 AGCAATCCGACTCCT TGGCA AAA TGCCA TTTTACAAAATGGCT SPH_0116 94921 - 96969 + | structural protein SPH_0117 97029 - 97292 + | hypothetical protein TERM 97 97386 - 97402 + G 70 -5.9 -4.36914 | CTAACACTGATTGTC TCAATGG AAA TCATTGA TTTTGTCACAGGGAC SPH_0118 97302 - 97718 + | putative holin 1 SPH_0119 97722 - 98054 + | phage holin TERM 98 98088 - 98113 + F 70 -8.3 -3.29511 | gap 1 AACAGACTACGTACA GGCT-TGCCCCA GGT TGGGGTGCAGCC TTATCGACAAGTACA TERM 99 99032 - 99015 - f 80 -7.1 -4.48299 | opp_overlap 99014 99017 TTACAGTTAAATAAA TAGAAAG GAAA CTTTCTA AATTGTTCTTTCACC TERM 100 99046 - 99065 + F 100 -11.4 -6.09196 | TAAATTGTTCTTTCA CCGCAGGC TCAG GCTTGCGG TTTTTTTGTTTTAAA SPH_0122 99296 - 99739 + | deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) SPH_0123 99699 - 100256 + | phosphoglycerate mutase family protein radA 100369 - 101631 + | DNA repair protein RadA SPH_0125 101704 - 102201 + | carbonate dehydratase SPH_0126 102222 - 103037 + | hypothetical protein TERM 101 103060 - 103084 + F 74 -3.5 -5.34655 | opp_overlap 103063, overlap 103063 TTCAAAAGAATGATG CAAGGGTACAA ATA TGGTGCCCTTC TTTTATTTTTGATTG TERM 102 103063 - 103081 + F 74 -5.2 -4.70511 | opp_overlap 103063, overlap 103060 AAAAGAATGATGCAA GGGTACAA ATA TGGTGCCC TTCTTTTATTTTTGA SPH_0127 103182 - 104150 + | ribose-phosphate pyrophosphokinase TERM 103 104176 - 104159 - T 75 -9.9 -2.56908 | opp_overlap 104159, overlap 104158 AATTTAATGACCAAG CCTGAGA TGAT TCTCAGG TTTTTTCGTCTTTTT TERM 104 104159 - 104176 + T 100 -9.9 -5.38348 | opp_overlap 104159 104158 AATTTAATGACCAAG CCTGAGA TGAT TCTCAGG TTTTTTCGTCTTTTT TERM 105 104688 - 104639 - T 75 -8.1 -3.87627 | overlap 104637 TTTCTACACAAAATA GGCTCCATAATATCCATAGGG GATTTACA CACTACAAATATTATAGAGCC ATTTTACAACAGTGC SPH_0128 104925 - 104692 - | hypothetical protein SPH_0129 105034 - 104918 - | hypothetical protein TERM 106 105089 - 105105 + r 74 -6.6 -4.36931 | opp_overlap 105088 TTAATTCCAAGAATG CCATCT TAACC AGATGG TTTTCCTGTCCATTG SPH_0130 105506 - 105249 - | hypothetical protein TERM 107 105715 - 105733 + H 70 -4.6 -4.71061 | opp_overlap 105715 105717, overlap 105717 CTATTATAGATTCAA TATGCTAT ATT ATAGCACA TTTTTAAATCTAGGT TERM 108 107540 - 107554 + G 82 -11.4 -3.15841 | overlap 107538 AGCAGTGGATGTGTT GGAGCG TCT CGCTCC TATTGCTCCGATTGT SPH_0131 105855 - 108488 + | DNA polymerase I (POL I) TERM 109 108506 - 108492 - f 72 -2.7 -5.28942 | opp_overlap 108492, overlap 108486 GAGGCTAAATAAAAA GGGGG CTAGT CCTCC TTTTTTGTAGTAGAA TERM 110 108492 - 108506 + F 80 -4.9 -5.31275 | opp_overlap 108492 108486 GAGGCTAAATAAAAA GGGGG CTAGT CCTCC TTTTTTGTAGTAGAA SPH_0132 108573 - 109010 + | CoA binding protein TERM 111 109017 - 109034 + F 83 -7.7 -4.75289 | opp_overlap 109017, overlap 109012 GAAGCATAAGAAAAA GGTAGCT GATG GGCTACC TTTTGTGTTATACTC TERM 112 109034 - 109017 - f 89 -7 -5.24416 | opp_overlap 109017 109012 GAAGCATAAGAAAAA GGTAGC TGATGG GCTACC TTTTGTGTTATACTC TERM 113 109092 - 109110 + G 72 -10.4 -2.61383 | overlap 109091 ACTAGCTGCGGGTTG CTCAAAAC ACT GTTTTGAG GTTGTAGATACGACT TERM 114 109184 - 109166 - g 71 -9.6 -2.87931 | overlap 109169 109177 109181 TTGAGGTTGCAGATA GAACTGAC GAA GTCAGCTC AAAACACCGTTTTGA TERM 115 109229 - 109211 - g 71 -9.6 -2.87931 | overlap 109214 109222 109226 TTGAGGTTGCAGATA GAACTGAC GAA GTCAGCTC AAAACACCGTTTTGA TERM 116 109274 - 109256 - g 71 -9.6 -2.87931 | overlap 109259 109267 109271 TTGAGGTTGCAGATA GAACTGAC GAA GTCAGCTC AAAACACCGTTTTGA TERM 117 109319 - 109301 - g 71 -9.6 -2.87931 | overlap 109304 109312 109316 TTGAGGTTGCAGATA GAACTGAC GAA GTCAGCTC AAAACACCGTTTTGA SPH_0133 109051 - 109401 + | hypothetical protein SPH_0134 110430 - 109420 - | membrane protein Spr0034 TERM 118 109699 - 109711 + g 91 -6.3 -5.52384 | GACTTTTTTCAGTTG TAAGC CTT GCTTA TTTTTTTGCTCGCGA SPH_0135 110579 - 111748 + | putative aminotransferase A TERM 119 112223 - 112236 + G 70 -3.1 -4.89521 | TCTGCCATCGGGTTG GTCAG GCTT TTGAC TTTTCTTTCAAATAT recO 111745 - 112515 + | DNA repair protein RecO TERM 120 112760 - 112742 - g 87 -6 -5.31855 | TAGGAATAAGAAAAA TGCCAGTA TGG TATTGGCA GCCAAGGCTGTCAAA plsX 112512 - 113504 + | fatty acid/phospholipid synthesis protein PlsX SPH_0138 113510 - 113743 + | hypothetical protein TERM 121 114021 - 113979 - g 86 -8 -4.98531 | overlap 113980 114013 TTGCCAAAGTAAAAA CGTTTAAAATGATTTCAACA ACC TATCGAAATCATCGTAAACA CTTCGGATTACGAAT TERM 122 114020 - 113980 - g 74 -9.3 -3.58396 | overlap 113979 114013 TGCCAAAGTAAAAAC GTTTAAAATGATTTCAACA ACC TATCGAAATCATCGTAAAC ACTTCGGATTACGAA SPH_0139 113786 - 114079 + | mobile genetic element SPH_0140 114282 - 114512 + | hypothetical protein SPH_0141 114515 - 114640 + | hypothetical protein TERM 123 114629 - 114618 - f 70 -4.4 -4.77165 | CTTCGGAGAAGAAAA CAGA AAAA TCTG TTAAAAAATAATCAA TERM 124 115741 - 115730 - g 70 -3 -5.1675 | GCAGTTATTAAAAAA GAAA TATT TTTC TGTAAATGATTTGTT SPH_0142 115263 - 116156 + | XRE family transcriptional regulator TERM 125 116149 - 116172 + F 93 -8.2 -5.69023 | opp_overlap 116152 AGATAGATTTCCCAA CAACCTGACT TCTA AGTCATGTTG TTTTTTTCATGTTTT TERM 126 116988 - 116969 - g 70 -3.4 -4.89966 | opp_overlap 116972, overlap 116970 116984 ATATTGAAAAAGAAA GGTGCTGC TAAA GCAGCTCT ATGGTAGAACTAGAT SPH_0143 116699 - 116995 + | hypothetical protein TERM 127 117040 - 117068 + G 95 -6.1 -5.55001 | overlap 117041 ATGTGAAAGTATTTT AGGTTATCTTAAT TTT ATTGGGATAACCC TTTTGTTTTTTGTTA TERM 128 117041 - 117067 + G 83 -9.6 -3.8934 | overlap 117040 TGTGAAAGTATTTTA GGTTATCTTAAT TTT ATTGGGATAACC CTTTTGTTTTTTGTT TERM 129 117590 - 117615 + G 75 -2.5 -5.1963 | AGTCAAAAAAGATTT CGTAGCAGTCT ATTT ATATTGCTTCG TTTTTGTTGGTTAAA SPH_0144 117002 - 118138 + | hypothetical protein SPH_0145 118375 - 118617 + | hypothetical protein SPH_0146 118614 - 119210 + | hypothetical protein SPH_0147 119191 - 119682 + | hypothetical protein TERM 130 119677 - 119693 + F 93 -3.8 -6.01187 | TCTATTATAAATAGT TTTTAG AAATA CTAAAA TTTTTTTCTTTACTT TERM 131 119762 - 119785 + F 100 -10.4 -5.60993 | overlap 119759 AATTCTTATATTTTC TAGGTAGAAC GTTT GTTCTGCCTA TTTTTTTATCCAAAA TERM 132 119994 - 119976 - f 78 -10.4 -2.61383 | overlap 119975 AGTCCTATCTACAAC CTCAAAAC AGT GTTTTGAG CAGCCTGCGGCTAGT SPH_0148 120062 - 122215 + | transport/processing ATP-binding protein ComA SPH_0149 122228 - 123577 + | transport protein ComB TERM 133 123611 - 123634 + F 84 -3.9 -5.64421 | TAAATAATTTTTAAA CTGTGAGAA AGATTC TTCTTGCAG TTTTTTCTTTACAAT purC 123746 - 124453 + | phosphoribosylaminoimidazole-succinocarboxamide synthase SPH_0151 124464 - 124598 + | phosphoribosylaminoimidazole-succinocarboxamide synthase (saicar synthetase) TERM 134 125976 - 125966 - g 79 -6.8 -4.56597 | opp_overlap 125966 125975 125975, overlap 125975 GTTGTCCGTGAAAAA CCTG AAG CAGG TGATGTGATCATCCT TERM 135 127584 - 127573 - g 74 -4.4 -4.96468 | opp_overlap 127573 TAAAGCCAAAGAAAA GGTT GAAA AACC TGTGGTTTACATCCC SPH_0152 124655 - 128380 + | phosphoribosylformylglycinamidine synthase purF 128473 - 129915 + | amidophosphoribosyltransferase purM 129952 - 130974 + | phosphoribosylformylglycinamidine cyclo-ligase purN 130971 - 131516 + | phosphoribosylglycinamide formyltransferase SPH_0156 131600 - 132109 + | teicoplanin resistance protein purH 132134 - 133681 + | bifunctional purine biosynthesis protein PurH TERM 136 133692 - 133713 + F 90 -8.1 -5.15969 | opp_overlap 133692 133687 ATTAAGAAGATAAAA GGGAAGAAA ACAG TTTCTTTCC TTTTTTGGCTTAAAA TERM 137 133713 - 133692 - f 77 -5.9 -4.80656 | opp_overlap 133692, overlap 133687 ATTAAGAAGATAAAA GGGAAGAAA ACAG TTTCTTTCC TTTTTTGGCTTAAAA TERM 138 135031 - 135016 - g 95 -6.2 -5.5353 | TATACCAACAAAAAA TAGAAG GACT CTTCTA CCGAACAGATATCGG purD 133803 - 135065 + | phosphoribosylamine--glycine ligase TERM 139 135148 - 135124 - f 100 -13 -4.07568 | TCGTCGTGGTGAAAA GACCAGAACA GTGAA TGTTCTGGTC AGGGGGAAACTTGGA TERM 140 135355 - 135328 - g 100 -15.8 -3.53091 | opp_overlap 135334, overlap 135331 ACCGCCGTTGTGAAA GAACGATTGGAT GATA ATCCAATCGTTC AGGGAAATTGGAAGA TERM 141 135352 - 135331 - g 91 -11.7 -3.90744 | opp_overlap 135334, overlap 135328 GCCGTTGTGAAAGAA CGATTGGAT GATA ATCCAATCG TTCAGGGAAATTGGA SPH_0159 135322 - 135438 + | hypothetical protein purE 135468 - 135956 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 142 135975 - 136003 + G 75 -8.1 -4.04318 | AATCGGAATTATCGG TGGCGGTCAACTG GGT CAGATGATGGCCA TTTCTGCTATCTACA purK 135943 - 137034 + | phosphoribosylaminoimidazole carboxylase, ATPase subunit SPH_0162 137044 - 137271 + | hypothetical protein purB 137334 - 138632 + | adenylosuccinate lyase TERM 143 138641 - 138669 + T 100 -13.3 -5.24129 | opp_overlap 138641 TGATTAATTAAAAAA TAAACAGCGAGCT TCA ATCTCGCTGTTTA TTTTTTATCGAAAAG TERM 144 138669 - 138641 - T 100 -13.3 -5.30155 | opp_overlap 138641 TGATTAATTAAAAAA TAAACAGCGAGCT TCA ATCTCGCTGTTTA TTTTTTATCGAAAAG SPH_0164 142625 - 138687 - | beta-N-acetylhexosaminidase TERM 145 138769 - 138785 + g 87 -5.1 -5.47431 | overlap 138770 TCTGCAGAATCGTGA GTTCCTG TTT CAGGAAG TTTTTTCTCTGTTAC TERM 146 138770 - 138784 + g 77 -8.6 -3.86832 | overlap 138769 CTGCAGAATCGTGAG TTCCTG TTT CAGGAA GTTTTTTCTCTGTTA TERM 147 139357 - 139380 + g 76 -4.6 -5.12172 | GCTGTGATAATATTT TCCTGACC AGCTGGGA GGTTAGGA TTTTCTTTCTTGATA TERM 148 139544 - 139556 + g 77 -7.7 -4.20918 | TGGCTACAAGTGTGT CAAGC TCA GCTTG TTTATTACGGTTGAG TERM 149 142577 - 142610 + g 71 -3.9 -4.946 | opp_overlap 142565 142570 142597, overlap 142570 142580 142596 142597 GAACAGAAGCTGCTC CTACAGCGTATTT ACGAATAG AAAAACGCTGTTG TTTTTCATGTTTCAT TERM 150 142939 - 142905 - R 80 -10.2 -3.04443 | gap 1, opp_overlap 142905 142911, overlap 142911 GGTATAATAAGCATA GAA-AAAGCCCGAGC GATTAG GCTCAGGCTTTCTTC TTAGTGATCACGGTC TERM 151 142905 - 142939 + r 70 -8 -3.21416 | gap 1, opp_overlap 142905 142911, overlap 142911 GGTATAATAAGCATA GAA-AAAGCCCGAGC GATTAG GCTCAGGCTTTCTTC TTAGTGATCACGGTC TERM 152 142932 - 142911 - R 100 -9.4 -5.05079 | opp_overlap 142905 142911, overlap 142905 ATAAGCATAGAAAAA GCCCGAGC GATTAG GCTCAGGC TTTCTTCTTAGTGAT TERM 153 142911 - 142932 + r 80 -7.2 -4.49316 | opp_overlap 142911 142905, overlap 142905 ATAAGCATAGAAAAA GCCCGAGC GATTAG GCTCAGGC TTTCTTCTTAGTGAT SPH_0165 143683 - 142940 - | transcriptional regulator, GntR family protein SPH_0166 144004 - 145791 + | beta-galactosidase TERM 154 146181 - 146165 - g 71 -9.5 -2.9062 | overlap 146162 146174 CGTAGTAGACAAGGA TGTGGAA GAC TTCCACA AACTGGCAGAAAAAG SPH_0167 145788 - 146264 + | phosphotransferase system sugar-specific eiib component SPH_0168 146292 - 147197 + | phosphotransferase system sugar-specific EIIC component SPH_0169 147184 - 147999 + | PTS system, IID component SPH_0170 148006 - 148410 + | phosphotransferase system sugar-specific EII component SPH_0171 148663 - 149829 + | hypothetical protein SPH_0172 149945 - 150982 + | aldose 1-epimerase SPH_0173 151189 - 152043 + | glyoxalase family protein SPH_0174 152193 - 152450 + | hypothetical protein TERM 155 152621 - 152575 - T 100 -22.7 -2.52676 | opp_overlap 152575 CAGGTGTTGAATGTA CTGACCCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTGGGGGTCAG TTCATAAGAACCTTG TERM 156 152575 - 152621 + T 100 -23.4 -3.14881 | opp_overlap 152575 CAGGTGTTGAATGTA CTGACCCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGGGTCAG TTCATAAGAACCTTG SPH_0175 152854 - 152618 - | chlorohydrolase TERM 157 152768 - 152750 - G 72 -10.4 -2.61383 | opp_overlap 152749, overlap 152749 152759 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CTGACTTCGTCAGTT SPH_0176 153313 - 153194 - | coenzyme A disulfide reductase TERM 158 153372 - 153386 + H 72 -5 -4.7373 | overlap 153373 TCATCAGCTTCCTCC TTGACA CTT TGTCAG TTTTTGATACAATAG SPH_0177 153425 - 154189 + | phosphorylase Pnp/Udp family protein TERM 159 154495 - 154477 - g 72 -10.4 -2.61383 | overlap 154476 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CAACCTGTGACTAGC TERM 160 154565 - 154553 - g 82 -6.3 -4.93365 | overlap 154559 GCCTATAATCAAAAA GAGAA ATT TTCTC CTGAAAAGCATATAG SPH_0178 154445 - 154585 + | hypothetical protein SPH_0179 154754 - 156133 + | Trk transporter membrane-spanning protein - K+ transport SPH_0180 156147 - 156812 + | Trk family potassium uptake protein TERM 161 156828 - 156814 - f 71 -7.8 -3.61268 | opp_overlap 156814 CATTGAATTCGTAAA GAGGGA TGA CCCCTC TTTTTTGATGCCTAA TERM 162 156814 - 156828 + F 88 -7.1 -5.1675 | opp_overlap 156814 CATTGAATTCGTAAA GAGGG ATGAC CCCTC TTTTTTGATGCCTAA SPH_0181 156947 - 157060 + | hypothetical protein TERM 163 158158 - 158191 + F 73 -4.1 -4.98531 | gap 1, opp_overlap 158166, overlap 158152 158162 158163 AGTGTTTTATAAGAG GGATTTAAGAAAAATT TTA ACTTTTTCTTA-GTCC TTTTTAATTTCAGGA TERM 164 158964 - 158950 - g 73 -7.2 -3.99986 | TTAACAAAAGGGAAA TACTTC TAT GAAGTA GACTTAAATGGCAAT SPH_0184 158254 - 161283 + | cell wall surface anchor family protein TERM 165 161399 - 161428 + F 80 -6.6 -4.82901 | opp_overlap 161399 161401 161416, overlap 161401 GTAAAACAATAAAAA TAGTGTTATACT TAAAGC AGTATAGCACTG TTTTTATCAAAGGAG TERM 166 161428 - 161399 - f 74 -2.2 -5.4593 | opp_overlap 161399 161401, overlap 161401 161416 GTAAAACAATAAAAA TAGTGTTATACT TAAAGC AGTATAGCACTG TTTTTATCAAAGGAG TERM 167 161401 - 161426 + F 73 -7 -4.03995 | opp_overlap 161401 161399 161416, overlap 161399 AAAACAATAAAAATA GTGTTATACT TAAAGC AGTATAGCAC TGTTTTTATCAAAGG SPH_0185 161450 - 162148 + | response regulator SaeR TERM 168 162194 - 162208 + G 79 -5 -5.09173 | TTATTTCAACCCTCT TAACCA TTT TGGTTG TTTTTTGGGCTGTTC SPH_0186 162145 - 163197 + | histidine kinase TERM 169 163622 - 163593 - g 78 -7.3 -4.42748 | GTAGGTGAAAAACAA TTCCGTAACTTGT TCGT ACAAGCTACAAAA ATCAAAGGCGGAATC rpsD 163392 - 164003 + | ribosomal protein S4 TERM 170 164045 - 164071 + F 87 -6.5 -5.4387 | opp_overlap 164045 AGGCCTTGATATTAA GCACTTTGGGA CGTTC TCCCTTAGTGC TTTTTTGATTTCTCT TERM 171 164241 - 164219 - g 72 -3.4 -5.0133 | GATTTTCGTAAAAAA GTTCTCTC TTATTGT GAGCGAAC AGGTAGTATAACAGA SPH_0188 164189 - 164347 + | transposase SPH_0189 164771 - 165031 + | hypothetical protein SPH_0190 164985 - 165206 + | hypothetical protein TERM 172 165262 - 165221 - f 100 -9.7 -4.88711 | gap 1, opp_overlap 165221 ATAACATATTAAAAA TCTCCAGATTA-GGAACT ATCGCTG AGTTCCCTAGTCTGGAGA TTTTTCAGTATACCC TERM 173 165221 - 165262 + F 100 -11.9 -4.70659 | gap 1, opp_overlap 165221 ATAACATATTAAAAA TCTCCAGATTA-GGAACT ATCGCTG AGTTCCCTAGTCTGGAGA TTTTTCAGTATACCC SPH_0191 165495 - 166454 + | ABC transporter membrane-spanning permease - sugar transport SPH_0192 166468 - 167391 + | protein LplC TERM 174 167550 - 167530 - f 72 -8.3 -3.35996 | overlap 167531 167537 CAGTCTTATCTACAA CCTCAAAGC AGT GCTTTGAGC AGCCTGCGACTAGTT TERM 175 167549 - 167531 - f 84 -11.8 -2.61383 | overlap 167530 167537 AGTCTTATCTACAAC CTCAAAGC AGT GCTTTGAG CAGCCTGCGACTAGT SPH_0193 167649 - 169124 + | ABC transporter, substrate-binding protein TERM 176 169173 - 169210 + F 100 -13.5 -5.40072 | opp_overlap 169173 169174, overlap 169174 CTCCTAAAATAAGAA TCACTGCTTTCCTCAGG TTGG TCTGGGGAGGGCAGTGG TTTTTTTGGCACAAG TERM 177 169174 - 169209 + F 100 -14.8 -3.83561 | opp_overlap 169173 169174, overlap 169173 TCCTAAAATAAGAAT CACTGCTTTCCTCAGG TTGG TCTGGGGAGGGCAGTG GTTTTTTTGGCACAA TERM 178 169222 - 169241 + F 72 -5 -4.76193 | opp_overlap 169225, overlap 169225 GTGGTTTTTTTGGCA CAAGGATA TAGA TATCCCTG TTTTCTCTTGTCCTT TERM 179 169508 - 169494 - g 79 -11.4 -2.70525 | opp_overlap 169494, overlap 169493 TTTCTGTAAATCAAT CGGCCT TAA AGGCCG TATCCTAGTCGCTGA TERM 180 169494 - 169508 + G 80 -11.4 -2.83164 | opp_overlap 169494 169493 TTTCTGTAAATCAAT CGGCCT TAA AGGCCG TATCCTAGTCGCTGA SPH_0194 169396 - 170382 + | rhodanese domain-containing protein TERM 181 170390 - 170405 + F 84 -6.8 -5.06585 | opp_overlap 170390 CTGTATAAGATCAAA CAGTCC TCAG GGGCTG TTTTTCTATGCTTTG SPH_0195 170504 - 171223 + | hypothetical protein TERM 182 171332 - 171349 + T 88 -7.7 -5.0538 | opp_overlap 171332 AAAAGTAAAGCAGAA GCAGGTC AATC GACTTGC TTTTTTGACATAGAA TERM 183 171388 - 171369 - T 95 -8.6 -5.4251 | opp_overlap 171369 TTGACATAGAAAAAA TCCTGCCA AGGA TGACAGGA TTGCTACTCAATGAA SPH_0196 172566 - 171502 - | hypothetical protein SPH_0197 173540 - 172629 - | hypothetical protein SPH_0198 174126 - 173533 - | hypothetical protein SPH_0199 174439 - 174113 - | transcription regulator TERM 184 174576 - 174557 - R 93 -7.2 -5.4251 | opp_overlap 174557 TTTATATATAAAAAA CTTCTAGC TAAA ACTAGAAG TTTAAAGGATCTTAT SPH_0200 175744 - 174578 - | cyanate permease SPH_0201 175895 - 176959 + | glycosyl transferase TERM 185 177259 - 177273 + G 75 -2.9 -5.22312 | TACAGCAAGATTACG GATTT CATGA AAATC TTTTTTGGTGTGACT SPH_0202 177001 - 178851 + | CapD protein, required for the biosynthesis of type 1 capsular polysaccharide TERM 186 178857 - 178903 + F 90 -11.9 -3.494 | opp_overlap 178862, overlap 178862 CATTGAATAAAAAAG AAAAACGCATATTATCAAGTT AAATA ACCTTGGTAATATGCGTTTTA TTATGTAGAGACTTA TERM 187 178862 - 178898 + F 100 -11.8 -4.84311 | opp_overlap 178862, overlap 178857 AATAAAAAAGAAAAA CGCATATTATCAAGTT AAATA ACCTTGGTAATATGCG TTTTATTATGTAGAG TERM 188 178898 - 178862 - f 100 -9.6 -5.84011 | opp_overlap 178862 178857 AATAAAAAAGAAAAA CGCATATTATCAAGTT AAATA ACCTTGGTAATATGCG TTTTATTATGTAGAG SPH_0203 178971 - 179087 + | hypothetical protein SPH_0204 179744 - 179112 - | phosphoglycolate phosphatase sdaAA 180638 - 179766 - | L-serine dehydratase, iron-sulfur-dependent, alpha subunit sdaAB 181318 - 180647 - | L-serine dehydratase, iron-sulfur-dependent, beta subunit TERM 189 181917 - 181903 - g 73 -8.6 -3.79043 | overlap 181898 181897 CAGTAGTAAGTGAAA CAGTTG TTT CAACTG TAAGCGGATCTGAAG SPH_0207 181560 - 182147 + | LysM domain-containing protein TERM 190 182167 - 182203 + T 100 -14 -3.95986 | opp_overlap 182167 182175 182176, overlap 182176 TAACGAGCAGAATAA TATGAAAAGGTCGAGG AAATC CCTCGACTTTTTTATA TTTCCTTCGGTTGAG TERM 191 182203 - 182167 - T 87 -10.3 -3.86935 | opp_overlap 182167 182176, overlap 182175 182176 TAACGAGCAGAATAA TATGAAAAGGTCGAGGA AAT CCCTCGACTTTTTTATA TTTCCTTCGGTTGAG TERM 192 182195 - 182175 - T 82 -7.5 -4.50841 | opp_overlap 182167 182176, overlap 182167 182176 AGAATAATATGAAAA GGTCGAGGA AAT CCCTCGACT TTTTTATATTTCCTT TERM 193 182176 - 182194 + T 100 -10.3 -5.5762 | opp_overlap 182175 182167 182176, overlap 182167 GAATAATATGAAAAG GTCGAGG AAATC CCTCGAC TTTTTTATATTTCCT TERM 194 182194 - 182176 - T 86 -11 -3.28878 | opp_overlap 182176 182167, overlap 182175 182167 GAATAATATGAAAAG GTCGAGGA AAT CCCTCGAC TTTTTTATATTTCCT SPH_0208 183062 - 182199 - | helix-turn-helix domain-containing protein SPH_0209 183226 - 183339 + | hypothetical protein SPH_0210 183385 - 183972 + | hypothetical protein SPH_0211 184385 - 184633 + | bacteriocin TERM 195 184667 - 184640 - f 81 -7.6 -4.42238 | opp_overlap 184642, overlap 184641 184642 GGATTTTAATTAAAA TTCTCCCTCCCC TTTT GGAGAGGGAGTT TCTTCACGGGAGGTA TERM 196 184666 - 184641 - f 86 -11.1 -3.2486 | opp_overlap 184642, overlap 184640 184642 GATTTTAATTAAAAT TCTCCCTCCCC TTTT GGAGAGGGAGT TTCTTCACGGGAGGT TERM 197 184665 - 184642 - f 95 -14.6 -2.54434 | opp_overlap 184642, overlap 184641 184640 ATTTTAATTAAAATT CTCCCTCCCC TTTT GGAGAGGGAG TTTCTTCACGGGAGG TERM 198 184642 - 184665 + F 100 -12.4 -4.15044 | opp_overlap 184642 184641 184640 ATTTTAATTAAAATT CTCCCTCCCC TTTT GGAGAGGGAG TTTCTTCACGGGAGG TERM 199 185533 - 185543 + G 73 -6.8 -4.31166 | overlap 185531 GTTGTCTCATTTTTT GCTG TTG CAGC TTTATCTCTTTATCA SPH_0212 184688 - 186796 + | ABC transporter membrane-spanning permease - amino acid transport SPH_0213 186793 - 187434 + | macrolide export ATP-binding/permease protein MacB SPH_0214 187641 - 188447 + | ABC transporter solute-binding protein - amino acid transport argG 188464 - 189660 + | argininosuccinate synthase argH 189689 - 191080 + | argininosuccinate lyase TERM 200 191103 - 191125 + T 93 -9.2 -4.3953 | opp_overlap 191103 ATGGGTTCAGAATAA GAGGTTGGTA GAT TATCAGCCTC TTTCTTGTCGTTGAA TERM 201 191346 - 191364 + T 93 -8.1 -5.5762 | opp_overlap 191346 191344 AATAATATGTAAAGA GTCGAGG AAATC CCTCGGC TTTTTTATCTTTCCT SPH_0217 191584 - 191369 - | hypothetical protein SPH_0218 192447 - 192818 + | hypothetical protein SPH_0219 192826 - 193038 + | hypothetical protein TERM 202 193132 - 193116 - f 70 -3.7 -5.0133 | GAGGTTGGGAAAAAA CTCAATT TGA AAGTGAG ATTGAGTAAATCTTT SPH_0220 193412 - 193537 + | hypothetical protein SPH_0221 193518 - 193655 + | hypothetical protein TERM 203 193920 - 193930 + G 70 -3.2 -4.90455 | TTTTCCATTGATTGA TTCC AAG GGGA TTTTTGTAAGTATAT SPH_0222 193843 - 194901 + | hypothetical protein SPH_0223 195216 - 196193 + | hypothetical protein SPH_0224 196665 - 197039 + | hypothetical protein SPH_0225 197046 - 197228 + | hypothetical protein SPH_0226 197247 - 198149 + | hypothetical protein TERM 204 198185 - 198173 - f 72 -4.9 -4.65933 | TATTTGTAAAACAAA TGAAA CAA TTTCA ACTAAGGAGGAGAAA SPH_0227 198205 - 198558 + | hypothetical protein TERM 205 198787 - 198799 + G 75 -2.7 -5.1925 | overlap 198788 TTTTAATCAATAAGT TTTTC CCA GAAAG TTTTTTGACTTATAC SPH_0228 198555 - 199283 + | hypothetical protein TERM 206 199570 - 199591 + F 78 -10.3 -2.75713 | opp_overlap 199574 199589, overlap 199566 199564 199574 AACATTTATTTTATA GCAATTCTA GGCT TAGAATTGC TCATATATATGTATT TERM 207 199995 - 200017 + F 74 -6.3 -4.3953 | overlap 200015 CTGTATCTAAAAACA GAGGTTGGT CGATT ATCAGCCTC TTTCTTGTCGTTGAA TERM 208 200509 - 200519 + F 70 -4 -4.88407 | AAGTATTTAGAGACT TTCA AAG TGAA TTTTTGCTTGACTGA TERM 209 200609 - 200593 - g 70 -3.6 -4.90778 | opp_overlap 200593 GCTAGTCAAACAAAA CCTGCT ATTCA AGCTGG TGTTTTTATTTTAGA SPH_0229 200515 - 200658 + | hypothetical protein SPH_0230 200990 - 200673 - | hypothetical protein TERM 210 200931 - 200948 + gF 100 -9.1 -5.72254 | GCTATAAAGATTGTC CGCAGGC TTAA GCTTGCG TTTTTTGTTGTTTAA SPH_0231 200944 - 201084 + | hypothetical protein SPH_0232 201209 - 203326 + | hypothetical protein TERM 211 203461 - 203507 + F 79 -5.3 -5.14682 | overlap 203456 GTGTCATTAAAAAAA CGACTCCTTTTCTCTAACTTG AAAAA TAGATTAGAGAAAATGGGTTG TTTTATTTATTATAG SPH_0233 203567 - 203704 + | hypothetical protein trmU 203726 - 204847 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 212 205157 - 205139 - g 75 -3 -5.29385 | overlap 205146 AAGTTAACGAAAAAA CGGAAGAC GCG GTAGTCCG TGAAGTGAAGGAAGA TERM 213 205415 - 205391 - g 71 -4.9 -4.57073 | overlap 205393 205404 CAGCCTTTTTAAAAA CAGCCCTACCA GAT TGGGAAGGCCA ACTAAGACACATTCA TERM 214 205413 - 205393 - g 71 -7.5 -3.90048 | overlap 205391 205404 GCCTTTTTAAAAACA GCCCTACCA GAT TGGGAAGGC CAACTAAGACACATT SPH_0235 204988 - 205443 + | MutT/nudix family protein gidA 205453 - 207366 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 215 207394 - 207410 + T 77 -9.5 -3.2614 | opp_overlap 207389 TTCTTACGAATGAGT TCAAAGC TTG GCTTTGA TTCATCTCCAGCCTC TERM 216 207526 - 207555 + T 87 -11.5 -3.25072 | opp_overlap 207531, overlap 207531 AAAGAAAGCATAGAG AAAAACAGCTCCG AAGA CGGGGCTGTTTTA TTGACTTGTACTCAA TERM 217 207550 - 207531 - T 100 -9.2 -5.06505 | opp_overlap 207526 207531 AAGCATAGAGAAAAA CAGCTCCG AAGA CGGGGCTG TTTTATTGACTTGTA TERM 218 207531 - 207550 + T 100 -11.4 -4.73635 | opp_overlap 207531, overlap 207526 AAGCATAGAGAAAAA CAGCTCCG AAGA CGGGGCTG TTTTATTGACTTGTA TERM 219 207610 - 207630 + T 72 -8.3 -3.35996 | opp_overlap 207582, overlap 207611 AGCTAGCCGTAGGTT GCTCAAAGC ACT GCTTTGAGG TTGTAGATAGAACTG TERM 220 207611 - 207629 + T 84 -11.8 -2.61383 | opp_overlap 207582, overlap 207610 GCTAGCCGTAGGTTG CTCAAAGC ACT GCTTTGAG GTTGTAGATAGAACT TERM 221 207658 - 207640 - T 76 -9.6 -2.87931 | opp_overlap 207655 207656, overlap 207643 207655 TTGAGGTTGTAGATA GAACTGAC GAA GTCAGCTC AAAACACAGTTTTGA TERM 222 207655 - 207643 - T 71 -7.7 -3.58905 | overlap 207640 AGGTTGTAGATAGAA CTGAC GAA GTCAG CTCAAAACACAGTTT TERM 223 207656 - 207674 + T 78 -10.4 -2.6176 | opp_overlap 207640 207655, overlap 207655 AACTGACGAAGTCAG CTCAAAAC ACA GTTTTGAG GTTGTGGATAGAATT SPH_0237 209424 - 207745 - | metallo-beta-lactamase superfamily protein TERM 224 208218 - 208230 + g 84 -7.7 -4.66609 | overlap 208209 CAGTATCCACTGCTA GTCCA GCG TGGAC TTTTTGCATGCGGTA SPH_0238 209659 - 209426 - | hypothetical protein SPH_0239 210230 - 209985 - | hypothetical protein TERM 225 210157 - 210174 + g 81 -2.5 -5.63517 | overlap 210158 ATTAAATGCTTAGAT GCCCTGC TTAT GCTGGGG TTTTTTGTTTGGGGA TERM 226 210249 - 210220 - G 78 -7.1 -4.371 | opp_overlap 210214 210220 210222, overlap 210221 210222 TTTACGACACGAAAA TTCCACCCCATCT ATCA AGATGAGGTGGTC TTTGCATTTTTCTAA TERM 227 210248 - 210221 - G 79 -10.6 -3.21778 | opp_overlap 210220 210214 210222, overlap 210220 210222 TTACGACACGAAAAT TCCACCCCATCT ATCA AGATGAGGTGGT CTTTGCATTTTTCTA TERM 228 210222 - 210247 + g 89 -11.9 -3.59063 | opp_overlap 210222 210221 210220, overlap 210220 210214 TACGACACGAAAATT CCACCCCATCT ATCA AGATGAGGTGG TCTTTGCATTTTTCT TERM 229 210247 - 210222 - G 93 -14.1 -2.52585 | opp_overlap 210220 210214 210222, overlap 210221 210220 TACGACACGAAAATT CCACCCCATCT ATCA AGATGAGGTGG TCTTTGCATTTTTCT SPH_0240 210629 - 210477 - | bacteriocin-type signal sequence domain-containing protein SPH_0241 210816 - 210631 - | hypothetical protein TERM 230 210797 - 210787 - G 74 -4 -5.02439 | AGATAAGGATAAAAA TTGA TTG TCAA GAATGTCAAAATTTG TERM 231 211114 - 211139 + G 73 -8.3 -3.75153 | AGTATTACTCTTATG CCTGCCATCGA TTTT TTGATGGCAAG TTTGGATTGGACACC SPH_0242 210994 - 211677 + | glycoprotein endopeptidase rimI 211674 - 212111 + | ribosomal-protein-alanine acetyltransferase SPH_0244 212101 - 213111 + | O-sialoglycoprotein endopeptidase (glycoprotease) TERM 232 213161 - 213183 + T 100 -15 -5.27779 | opp_overlap 213154 AAAAGTTACAATCTG GAGAGTACGA AAT TCGTACTCTC TTTTTTGATGTTCAA TERM 233 213599 - 213615 + T 89 -10.9 -3.53224 | opp_overlap 213599 TCCTGGTGTAGTAAA TCAGTCC AGT GGACTGA TTTAGCCCGAGCCTA TERM 234 213615 - 213599 - T 90 -10.9 -3.72576 | opp_overlap 213599 TCCTGGTGTAGTAAA TCAGTCC AGT GGACTGA TTTAGCCCGAGCCTA TERM 235 213668 - 213657 - T 75 -7.2 -4.08767 | GCGAGGGTTCCAAAA GCGC TTGA GCGC CCGATACTCCAAGGA TERM 236 214581 - 214530 - T 100 -14.6 -4.30719 | opp_overlap 214508 214541, overlap 214531 TTTTTCTACAAGAAA CGACCCTATAATTCCTGGGGTGGG ATTA CCCACTACAGAAATTATAGAGCCA AAGCATTCCAAAGTC TERM 237 214580 - 214531 - T 100 -15.9 -3.1811 | opp_overlap 214508 214541, overlap 214530 TTTTCTACAAGAAAC GACCCTATAATTCCTGGGGTGGG ATTA CCCACTACAGAAATTATAGAGCC AAAGCATTCCAAAGT TERM 238 214615 - 214584 - T 75 -8.1 -3.75193 | opp_overlap 214585, overlap 214585 214587 AATTATAGAGCCAAA GCATTCCAAAGTC TTGTCT GACTCTGGAATGT TTTCTGTTCACAGTT TERM 239 214614 - 214585 - T 83 -11.6 -2.84393 | opp_overlap 214585, overlap 214584 214587 ATTATAGAGCCAAAG CATTCCAAAGTC TTGTCT GACTCTGGAATG TTTTCTGTTCACAGT TERM 240 214585 - 214614 + T 100 -9.4 -4.66938 | opp_overlap 214585 214584 214587 ATTATAGAGCCAAAG CATTCCAAAGTC TTGTCT GACTCTGGAATG TTTTCTGTTCACAGT SPH_0247 215367 - 215164 - | degenerative transposase TERM 241 216619 - 216645 + G 76 -11 -2.50859 | overlap 216618 216616 216613 TATCGGATTTATTGT ATATTCCTTCTG ATA CAGAAGGAATAC CTATGTGTGTTTTAG TERM 242 216862 - 216850 - g 71 -4.9 -4.58698 | opp_overlap 216855, overlap 216855 GTAAATCAAAAATAA GAAAA CAT TTTTC TGTGCAAAAAATGTT TERM 243 216875 - 216855 - g 72 -3.4 -5.16681 | opp_overlap 216855, overlap 216850 TCAAAAATAAGAAAA CATTTTTC TGTGC AAAAAATG TTTGTAGAAACCATG SPH_0248 215718 - 216932 + | glycosyl transferase, group 1 family protein SPH_0249 216925 - 217878 + | glycosyl transferase family protein SPH_0250 217888 - 219504 + | ABC transporter, ATP-binding protein TERM 244 219668 - 219722 + F 100 -28.4 -4.27686 | opp_overlap 219672 AATATCCCAATCTTA TGAACTGCACCCCAAAAGTTAGAT TTATTCT GTCTAACTTTTGGGGTGCAGTTCA TTTTGCATAGTTTTG TERM 245 219718 - 219672 - f 100 -22.7 -3.18681 | opp_overlap 219668 TCCCAATCTTATGAA CTGCACCCCAAAAGTTAGA TTTATTCTG TCTAACTTTTGGGGTGCAG TTCATTTTGCATAGT TERM 246 220640 - 220652 + G 70 -3.4 -4.88736 | overlap 220631 220636 CTTTCACTTGGTGAC CATG TTGAT CATG TTTTTGTGAATAGTA SPH_0251 220205 - 220855 + | hypothetical protein TERM 247 221783 - 221764 - g 84 -2.2 -5.73672 | overlap 221767 AAACAATTAAAAAAA GAATTTAT AGAA ATAAATGC CCCAGTGATAGAAGC SPH_0252 220966 - 222138 + | UDP-glucose 6-dehydrogenase TERM 248 222393 - 222425 + F 71 -6.3 -4.14511 | TTCTATTTAGAACGA GGATTGAGTTCTGTA TTG TACAAGGCTCGGTCC TTTTAGAGTCAGCTT TERM 249 222433 - 222449 + F 80 -6.5 -4.65895 | CTCGGTCCTTTTAGA GTCAGCT TAA GGCTGGC TTTTTCAATCACCAA TERM 250 222826 - 222807 - g 77 -10.8 -2.82516 | opp_overlap 222809, overlap 222809 TTGCCCATCAGGATA TAGCTGCT TTAG AGCAGCTA TTGGAGGAAGTCGAT TERM 251 222930 - 222918 - g 70 -3.4 -4.9448 | ATTCACTAAATAAAA GCTA CCCAC TAGC AGAGGAGGATAGCGA TERM 252 223319 - 223295 - g 79 -5.8 -4.93547 | GGAAGCAATCAAAAA GAGATTGAAC GCTTT ATCCAATCTC TGCAGGTATTAGAAA SPH_0253 222533 - 223396 + | MutR SPH_0254 223687 - 223884 + | hypothetical protein SPH_0255 223952 - 224617 + | CAAX amino protease TERM 253 224993 - 225003 + G 73 -5.4 -4.64952 | AGTCTTTCTCCTTGT TGCT AGT AGCA TTTATTTGTCTGCTT SPH_0256 224689 - 225915 + | transporter, major facilitator family protein TERM 254 225943 - 225958 + T 95 -9 -4.93296 | ATAATATATGTTTGA GACTGG ATTG CCAGTC TTTTTATGATGGTCA SPH_0257 226478 - 226191 - | hypothetical protein TERM 255 226257 - 226239 - G 72 -10.4 -2.61383 | opp_overlap 226238, overlap 226238 AGTTCTATCCACAAC CTCAAAAC GGT GTTTTGAG CTGACTTCGTCAGTT TERM 256 226302 - 226284 - G 72 -10.4 -2.61383 | opp_overlap 226283, overlap 226283 AGTTCTATCCACAAC CTCAAAAC GGT GTTTTGAG CTGACTTCGTCAGTT TERM 257 226347 - 226329 - G 72 -10.4 -2.61383 | opp_overlap 226328, overlap 226328 AGTTCTATCCACAAC CTCAAAAC GGT GTTTTGAG CTGACTTCGTCAGTT TERM 258 226392 - 226374 - G 72 -10.4 -2.61383 | opp_overlap 226373 226390, overlap 226373 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CTGACTTCATCAGTT TERM 259 226655 - 226668 + G 70 -8.1 -3.66803 | GTCTCTTTGTTTATG CTGGG AGTG CCCAG TTTGCCATGTTGGCA SPH_0258 226549 - 227205 + | branched-chain amino acid permease SPH_0259 227195 - 227518 + | branched-chain amino acid transport protein AzlD TERM 260 228286 - 228263 - g 72 -9 -3.30159 | CCAAGGTTTGGACAA CTTGAAAGTT ATCG AACTTCCAAG CGACCAACAACCGTA SPH_0260 227622 - 228452 + | ABC transporter substrate-binding protein - amino acid transport TERM 261 228631 - 228621 - g 76 -2.4 -5.48054 | opp_overlap 228627 ATGAAAATCAAAAAA TGGC TTG GCCT AGTAGCCCTTGCTAC SPH_0261 228606 - 229460 + | lipoprotein TERM 262 229472 - 229496 + F 73 -7.9 -3.79162 | opp_overlap 229471 GTAATAAGAAACAGG GAGGTGGGA GAGAGAA TTCCACCTC TTGCTTTTGTATAGA SPH_0262 229560 - 230933 + | acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase SPH_0263 230926 - 231987 + | methionine import ATP-binding protein MetN SPH_0264 231989 - 232681 + | ABC transporter permease protein TERM 263 232706 - 232679 - T 87 -10 -3.93984 | opp_overlap 232686, overlap 232686 AAATTGAGCCATAAA TAAAAAAGAGCC GTGT GGCTCTTTTTAA CTGATCAGATTTTCT TERM 264 232686 - 232699 + T 86 -8.1 -4.68593 | opp_overlap 232679 232686 GCCATAAATAAAAAA GAGCC GTGT GGCTC TTTTTAACTGATCAG TERM 265 232699 - 232686 - T 93 -8.1 -5.72622 | opp_overlap 232686, overlap 232679 GCCATAAATAAAAAA GAGCC GTGT GGCTC TTTTTAACTGATCAG SPH_0265 233280 - 232711 - | membrane-bound protein SPH_0266 233415 - 234029 + | hypothetical protein SPH_0267 234079 - 235677 + | sensor histidine kinase, putative SPH_0268 235689 - 236975 + | response regulator TERM 266 237316 - 237302 - g 81 -7.2 -4.56597 | opp_overlap 237301 CCTTGTTCGTAAAAA TTTGCA ATA TGCAAA CTATACTTACGTTGG SPH_0269 237027 - 237560 + | hypothetical protein TERM 267 237575 - 237603 + F 90 -8.3 -5.32944 | opp_overlap 237575 237578, overlap 237578 AGTATTGACAAAAAA GAACTATCAAGAT ACA ATCTTGGTAGTTG TTTTTTGATTATAGA TERM 268 237603 - 237575 - f 84 -6.1 -5.28778 | opp_overlap 237575 237578, overlap 237578 AGTATTGACAAAAAA GAACTATCAAGAT ACA ATCTTGGTAGTTG TTTTTTGATTATAGA TERM 269 237600 - 237578 - f 83 -7.8 -4.73105 | opp_overlap 237575 237578, overlap 237575 ATTGACAAAAAAGAA CTATCAAGAT ACA ATCTTGGTAG TTGTTTTTTGATTAT TERM 270 237578 - 237600 + F 100 -10 -4.73828 | opp_overlap 237578 237575, overlap 237575 ATTGACAAAAAAGAA CTATCAAGAT ACA ATCTTGGTAG TTGTTTTTTGATTAT SPH_0271 237638 - 238108 + | ribonucleotide reductase SPH_0270 238236 - 238105 - | hypothetical protein TERM 271 238270 - 238309 + r 84 -8 -4.63479 | opp_overlap 238269 TAACTTACAAAACCC CTGACCTCATGAGC CACTTTCTTCCT CCTCATGAGGTCAG TTTTACTTTCTGCTG SPH_0272 239760 - 238414 - | Spn1 transposase TERM 272 239849 - 239837 - R 100 -9.1 -5.14563 | TTGTCTAGTAAAAAA CACCC ATT GGGTG AAAAAAGAAACCATC TERM 273 239897 - 239860 - R 88 -6.9 -5.04249 | opp_overlap 239860 GGGTGAAAAAAGAAA CCATCCAGGATCTAAGC TAAG GCAAGGATTCTGGATGG TTTTTAGATTAGGGG TERM 274 239860 - 239897 + r 100 -11.3 -4.74103 | opp_overlap 239860 GGGTGAAAAAAGAAA CCATCCAGGATCTAAGC TAAG GCAAGGATTCTGGATGG TTTTTAGATTAGGGG TERM 275 239947 - 239966 + r 73 -3.6 -5.1287 | overlap 239949 GTTCTTATAAGTAGG TGGTTGAA GTTG TTCAACTG TTTTTTGAGTATAAA TERM 276 240039 - 240004 - R 80 -4.8 -5.2166 | gap 1, opp_overlap 240004 TAAGAACGTAAAAAA GCATAAGTTC-AGGTCT TCA AAACCTTGTTCTTATGC TTTTTATCATAGAAA SPH_0273 241372 - 240110 - | manganese transporter NRAMP TERM 277 241446 - 241436 - R 72 -2.6 -5.26918 | ATATTCTACAAAAAA TTTT GGA AAAA TGCAAGAATATTTTG TERM 278 241641 - 241662 + r 72 -5.1 -4.73677 | opp_overlap 241642, overlap 241642 GCAGGATAAAGAAAA ACCGAGAAG TTTC TTTCTCGGA TTTGTTTATTATGAG TERM 279 241661 - 241642 - R 93 -7.9 -5.40464 | opp_overlap 241641 241642 CAGGATAAAGAAAAA CCGAGAA GTTTCT TTCTCGG ATTTGTTTATTATGA TERM 280 241642 - 241661 + r 75 -8.6 -3.43122 | opp_overlap 241642, overlap 241641 CAGGATAAAGAAAAA CCGAGAAG TTTC TTTCTCGG ATTTGTTTATTATGA SPH_0274 242140 - 241682 - | hypothetical protein TERM 281 241844 - 241820 - G 72 -9.3 -3.28497 | overlap 241824 CCAGTGGAAAGGGAA CCAACCAGCAA GAG TTGCTAGTGGG ACAAAGCCAGCCAGC SPH_0275 242577 - 242137 - | response regulator TERM 282 242307 - 242297 - G 70 -5.4 -4.41241 | GAAATTTGGATAAAA TTGC TTG GCAA GAGTTTAAGAACCTG SPH_0276 242790 - 242665 - | hypothetical protein TERM 283 242838 - 242855 + H 73 -4.1 -4.86029 | ATGTGGAGGGATTGG GCTCC TATGTGGT GGAGC TTTTCTGTTCTTTCT TERM 284 242969 - 242951 - g 70 -8.9 -3.11634 | TCTCATATTATTGAA TTGCCAG AGATG CTGGCAA ACCAAATCGCGGCTG TERM 285 244166 - 244154 - g 80 -7.7 -4.31379 | overlap 244148 ACCAAGCCAGCAAAA CTGCA TTT TGCAG AGAGAAAGCCTGCTA SPH_0277 242933 - 244882 + | DNA mismatch repair protein MutL TERM 286 244970 - 244919 - T 85 -12.1 -3.1012 | gap 2, opp_overlap 244925, overlap 244925 AAATTTTCAAAATCA GA-AAAACGCATAAAATC-AGGTGT TCAA AAACCTTGATTTTATGCGTTTTATC ATAGAAATATTTACT TERM 287 244925 - 244963 + T 100 -13.5 -4.4648 | gap 1, opp_overlap 244919 244925 TCAAAATCAGAAAAA CGCATAAAATCAGGTGTT CAAA AAC-CTTGATTTTATGCG TTTTATCATAGAAAT TERM 288 244963 - 244925 - T 100 -11.3 -5.09245 | gap 1, opp_overlap 244925, overlap 244919 TCAAAATCAGAAAAA CGCATAAAATC-AGGTGT TCAA AAACCTTGATTTTATGCG TTTTATCATAGAAAT TERM 289 245063 - 245045 - T 77 -10.4 -2.52635 | opp_overlap 245044 245041, overlap 245044 AGTTTTATCAGTAAT CTCAAAAC AGT GTTTTGAG CTAATTTTGCCAGTT ribH 245674 - 245207 - | 6,7-dimethyl-8-ribityllumazine synthase SPH_0279 246880 - 245675 - | riboflavin biosynthesis protein ribAB ribE 247535 - 246900 - | riboflavin synthase, alpha subunit ribD 248620 - 247520 - | riboflavin biosynthesis protein RibD TERM 290 248671 - 248640 - H 100 -11.8 -5.42259 | CTACCTCCAAAAAAA TATACCTTGAATAG GGGA CTACTCAAGGCATA CAAAAGAAAACTTAT TERM 291 248733 - 248701 - H 100 -14.4 -5.1356 | TGCGATTAACAAAAA TGCTCTGAAATGAC AAGTA ATCATTTCAGAGCA CGCAAAAAGCACAAA TERM 292 249404 - 249380 - g 80 -6.4 -4.6635 | overlap 249382 AAATTGGCAAGAAAA CAGCCCAGCA GATGG TGCTGGACTT GGAAGGCAAGGTAGT TERM 293 249402 - 249382 - g 79 -9 -3.93768 | overlap 249380 ATTGGCAAGAAAACA GCCCAGCA GATGG TGCTGGAC TTGGAAGGCAAGGTA ruvA 249025 - 249618 + | holliday junction DNA helicase RuvA TERM 294 249870 - 249884 + G 73 -10 -2.90723 | opp_overlap 249869 TGAATTGGAAGCCAT GCTGGA GAA TCCAGC TATCATTCGAAATAG SPH_0283 249628 - 250191 + | DNA-3-methyladenine glycosylase 1 SPH_0284 250188 - 250865 + | CAAX amino protease TERM 295 250981 - 251000 + T 80 -6.4 -4.7458 | opp_overlap 250981 GATACCGAGAAAAAA GCTGAGAA ACTT TTCCCAGC TTTATTTGTTATAGT TERM 296 251000 - 250981 - T 95 -8.6 -5.29782 | opp_overlap 250981 GATACCGAGAAAAAA GCTGAGAA ACTT TTCCCAGC TTTATTTGTTATAGT SPH_0285 252033 - 251002 - | MccC family protein SPH_0286 252094 - 252246 + | hypothetical protein TERM 297 252287 - 252243 - T 76 -4.4 -5.1925 | gap 1, opp_overlap 252248 252249 252255, overlap 252255 GTATAACTCAAAAAA GTAAGTGA-AAAAGCAACCGC ACCT GCAGTTGCTTTTATCGTTTTC TTATTCTTGATAGCG TERM 298 252248 - 252282 + T 88 -7.3 -5.00467 | gap 1, opp_overlap 252243 252255, overlap 252249 252255 ACTCAAAAAAGTAAG TGA-AAAAGCAACCGC ACCT GCAGTTGCTTTTATCG TTTTCTTATTCTTGA TERM 299 252249 - 252281 + T 77 -8.6 -3.58654 | gap 1, opp_overlap 252243 252255, overlap 252248 252255 CTCAAAAAAGTAAGT GA-AAAAGCAACCGC ACCT GCAGTTGCTTTTATC GTTTTCTTATTCTTG TERM 300 252255 - 252274 + T 83 -7.8 -4.71401 | opp_overlap 252243 252255, overlap 252249 252248 AAAGTAAGTGAAAAA GCAACCGC ACCT GCAGTTGC TTTTATCGTTTTCTT TERM 301 252274 - 252255 - T 100 -10 -4.788 | opp_overlap 252255 252249 252248, overlap 252243 AAAGTAAGTGAAAAA GCAACCGC ACCT GCAGTTGC TTTTATCGTTTTCTT SPH_0287 252971 - 252288 - | hypothetical protein SPH_0288 253927 - 252983 - | magnesium and cobalt transporter TERM 302 254016 - 254006 - R 70 -4 -4.86731 | TTTTTTCAAATAAAA TCTT ACA AAGA CACCGTTGTTATTGG TERM 303 254104 - 254126 + r 93 -7 -5.55698 | TATAGTGCTTTTAGT GCAGTTTCGT AGA ATGATACTGC TTTTTTTGCGTTCTC SPH_0289 255254 - 254088 - | prophage Sa05, site-specific recombinase phage integrase family protein SPH_0290 256853 - 255339 - | AAA domain-contain protein TERM 304 256239 - 256249 + g 70 -2.6 -5.08088 | CTTGCGATCTCTTCG TAAA GCA TTTA TTTTTATTAAAAATT SPH_0291 257727 - 257014 - | putative DNA-binding phage protein TERM 305 257679 - 257695 + g 75 -8.1 -3.97674 | opp_overlap 257678 CACGGTTAAGATTAT TAGAGAA ATA TTCTCTA TTCTTTAAATCCTGA TERM 306 257825 - 257802 - H 77 -3.2 -5.57888 | ACGAAAAAAATAAAA TTTTTCAACA ACAG CGTTGACAAA GTACGAAAAAAATAG SPH_0292 257928 - 258065 + | hypothetical protein SPH_0293 258125 - 258751 + | hypothetical protein TERM 307 258748 - 258732 - f 93 -3.6 -6.02919 | TCAGAAATAAAAAAA CACGCC AAAGA AGCGCG TGAGAGCAACAAAAA TERM 308 259090 - 259080 - f 74 -6.8 -4.34771 | TAAAAGGCATTAAAA GCTC TTA GAGC AATTACACAACATAG SPH_0294 259225 - 259575 + | hypothetical protein SPH_0295 259572 - 259772 + | hypothetical protein TERM 309 259887 - 259871 - g 86 -4.3 -5.45726 | overlap 259872 GAGACCGCAAAAAAA GCGCCCA ATT TGAGCGA GAAAACCAACAGAGG TERM 310 259886 - 259872 - g 73 -7.8 -3.86351 | overlap 259871 AGACCGCAAAAAAAG CGCCCA ATT TGAGCG AGAAAACCAACAGAG SPH_0296 259774 - 259989 + | hypothetical protein SPH_0297 259986 - 260327 + | phage protein SPH_0298 260320 - 260601 + | phage protein SPH_0299 260736 - 261602 + | phage protein TERM 311 263099 - 263087 - g 72 -3.3 -5.1523 | TTGACAAGATAAAAA TGCGG ACA CCTCA ACACTCTATCACTAA SPH_0300 261655 - 263124 + | prophage Sa05, P4 family DNA primase TERM 312 263391 - 263405 + F 79 -8.6 -3.85817 | GAGCCTCAAGGGTTT GAACGT GTG ACGTTC TTTGTCACAAAAGGT SPH_0301 263487 - 263654 + | hypothetical protein TERM 313 263682 - 263660 - f 70 -4 -4.88495 | overlap 263661 ATACAGATAACAAAA TGGGGTAGAT AGT ACCGACCCCC TTGCAATGGTGTAAC SPH_0302 263738 - 264268 + | phage protein TERM 314 264275 - 264288 + F 86 -8.1 -4.80882 | opp_overlap 264273 264271 264275 TTGAAGTAGAATACA GGGGA GCAA TCCCC TTTTTGCTATCAAGT TERM 315 264288 - 264275 - f 70 -8.1 -3.2302 | opp_overlap 264275, overlap 264273 264271 TTGAAGTAGAATACA GGGGA GCAA TCCCC TTTTTGCTATCAAGT SPH_0303 264339 - 264848 + | hypothetical protein TERM 316 266003 - 265987 - f 93 -5.8 -5.81622 | opp_overlap 265987 AGAAAATGAAAAAAA GCCAGC ACAGG GCTGAC TCCTTTATGAATTAT SPH_0304 266055 - 266474 + | phage protein TERM 317 266587 - 266608 + F 70 -8 -3.24 | opp_overlap 266587, overlap 266586 TGGATAAACTACAAA CCCTCAGA AACGAA TCTGGGGG CTTTTGTGAGGTCAT TERM 318 266699 - 266684 - f 86 -6.1 -5.52023 | opp_overlap 266684 266682 ACCAGCAATAAAAAA GCACG TTTGAC CGTGC TAGTTTCTTGCCTGC TERM 319 266733 - 266747 + F 77 -4.9 -5.16237 | overlap 266741 266743 ACTCGTCAAATCTTA GCCCT TTTGT GGGGC TTTTTTGCTCCCCTT uvrA 266963 - 269794 + | excinuclease ABC, A subunit TERM 320 270128 - 270154 + G 85 -12.4 -3.22858 | overlap 270128 270129 TGCAGGTTTGGACTT GCTTCCACAAAC TCA GTTTGTGGAAGG TCTTCGTATGATTAA TERM 321 270129 - 270153 + G 100 -15.9 -2.53233 | overlap 270128 270128 GCAGGTTTGGACTTG CTTCCACAAAC TCA GTTTGTGGAAG GTCTTCGTATGATTA SPH_0306 269787 - 270848 + | Xaa-Pro dipeptidase SPH_0307 270980 - 271378 + | regulatory protein Spx TERM 322 271368 - 271355 - f 73 -8.1 -3.543 | opp_overlap 271352 GTAGAAAATGCAGAA GCACG TTTG CGTGC AGCTCTATAAACATC TERM 323 271386 - 271406 + F 93 -9.7 -4.10559 | opp_overlap 271386 271383 271382 CTCTATAAACATCAA GGCTGGGAG CAC TTCCCAGTC TTATTCTATTTTAAT TERM 324 271526 - 271510 - g 78 -2.9 -5.36441 | TGCGGACAGAAAAAA GAAACTG GAA CAGCTAC AAAAACAGAAAAGGA SPH_0308 271444 - 272013 + | putative lipoprotein SPH_0309 272100 - 272366 + | hypothetical protein SPH_0310 272370 - 272789 + | hypothetical protein SPH_0311 272805 - 273110 + | hypothetical protein TERM 325 273165 - 273177 + T 71 -5.5 -4.58283 | GGGGAAGAGTTGGAA CGTCC AGT GGATG TTTTTAGCCCAGTTC SPH_0312 273372 - 273247 - | hypothetical protein TERM 326 273437 - 273458 + H 77 -5.8 -4.66002 | opp_overlap 273437 GCTAACCAGGTAAGA GGTCGGGA CGAAAA TCCTGGCC TTGTTTTTATTAGTA SPH_0313 273523 - 274773 + | dihydrofolate:folylpolyglutamate synthetase TERM 327 274884 - 274900 + G 76 -6.6 -4.43815 | AGATTCACACTTTCT CTTGCT TCTCT AGCAAG TTTTAGTCTCTTAGT SPH_0314 274857 - 275312 + | putative lipoprotein TERM 328 275331 - 275347 + F 95 -8.7 -5.10154 | opp_overlap 275331 275330 275323 TATGCAAGTAGAAAG GGCTGGA TTT TTCAGCC TTTTTACTTTTACCT SPH_0315 275458 - 276990 + | cardiolipin synthase TERM 329 278577 - 278589 + G 86 -9.1 -4.4017 | overlap 278576 AAGAGTGAGCGCTTG TCGCC ATC GGCGA TTTTGTCCCCGTTGC SPH_0316 277248 - 278786 + | competence-induced protein Ccs4 TERM 330 279686 - 279674 - g 82 -6.3 -4.83593 | AAGAACTATCAAAAA CATCT CAA AGATG CAGAAGAGTGGGTAT nrdD 278906 - 281113 + | anaerobic ribonucleoside-triphosphate reductase SPH_0318 281125 - 281265 + | hypothetical protein TERM 331 281290 - 281263 - f 86 -5.6 -5.70522 | opp_overlap 281268, overlap 281270 AAGAACAAGAAAAAA TAAAAGTGAGAG CCAG CTCTCGCTTTTC TCATAGTGGGAGGTA TERM 332 281268 - 281285 + F 82 -7.7 -4.4891 | opp_overlap 281263 281270 CAAGAAAAAATAAAA GTGAGAG CCAG CTCTCGC TTTTCTCATAGTGGG SPH_0319 281309 - 281815 + | acetyltransferase nrdG 281808 - 282398 + | anaerobic ribonucleoside-triphosphate reductase activating protein SPH_0321 282395 - 283012 + | phosphoribulokinase/uridine kinase family protein TERM 333 283104 - 283135 + F 79 -8 -4.01089 | opp_overlap 283106 283110, overlap 283106 283110 AAACGAAAAAACAGC AACAAATCCCTTGC AATC GCAGGGGCTTTGTG TTATTCTGTTATGGT TERM 334 283106 - 283133 + F 86 -10.6 -3.58527 | opp_overlap 283106 283110, overlap 283104 283110 ACGAAAAAACAGCAA CAAATCCCTTGC AATC GCAGGGGCTTTG TGTTATTCTGTTATG TERM 335 283133 - 283106 - f 73 -8.4 -3.67898 | opp_overlap 283106 283104 283110, overlap 283110 ACGAAAAAACAGCAA CAAATCCCTTGC AATC GCAGGGGCTTTG TGTTATTCTGTTATG rpsJ 283279 - 283587 + | ribosomal protein S10 TERM 336 284374 - 284346 - g 70 -5.4 -4.37092 | gap 1, overlap 284349 284365 AGTTGTTCCAGAAAA GAACGTTATCCTT ATCA AAGG-TAACGTAC CAGGTGCTAAGAAAT rplC 283804 - 284430 + | ribosomal protein L3 rplD 284455 - 285078 + | ribosomal protein L4/L1 family protein rplW 285078 - 285374 + | ribosomal protein L23 rplB 285392 - 286225 + | ribosomal protein L2 TERM 337 286252 - 286233 - f 82 -8.6 -4.05319 | AGAAATAATATTAAA CTAGTCGC TTAA GCAACTAG TAAATCCGCCAGCTC rpsS 286329 - 286610 + | ribosomal protein S19 rplV 286622 - 286966 + | ribosomal protein L22 TERM 338 287133 - 287111 - g 71 -4.8 -4.58685 | opp_overlap 287102 287115 287116, overlap 287116 AAATTCGTTCAAAAA GAACTTGCTG ACG CAGCAGTTTC AACTATTGAAATCGA rpsC 286979 - 287632 + | ribosomal protein S3 rplP 287636 - 288049 + | ribosomal protein L16 TERM 339 288133 - 288119 - g 73 -7.8 -3.9461 | overlap 288095 288120 CTTTCTCAAGAAGAA CTCGCG AAG CGCGAA AACGAATTGAAAAAA rpmC 288059 - 288265 + | ribosomal protein L29 rpsQ 288290 - 288550 + | ribosomal protein S17 rplN 288576 - 288944 + | ribosomal protein L14 TERM 340 288986 - 288962 - f 71 -8.5 -3.12942 | opp_overlap 288961 288962, overlap 288959 288960 TTTAGGAACAAACTA GTCCCCTAGCT TCA AGCTAGGGTGC CCTTATGGGCGTAAG rplX 288991 - 289326 + | ribosomal protein L24 TERM 341 289322 - 289306 - f 74 -2.2 -5.55769 | opp_overlap 289306 CGCTACAACAAAAAA TCAGGC GAAGT GCTTGA TTAATCACGAAGGAA SPH_0335 289350 - 289892 + | 50S ribosomal protein L5 (BL6) SPH_0336 289910 - 290179 + | 30S ribosomal protein S14 TERM 342 290761 - 290734 - g 85 -5.6 -5.24129 | CGTGTCTACAAAAAA CGTGAAGACCTT CCAA AAGTTCTTAACG GACTTGGAATTGCCA rpsH 290464 - 290862 + | ribosomal protein S8 SPH_0338 291054 - 291590 + | 50S ribosomal protein L6 TERM 343 291628 - 291582 - f 87 -10.5 -3.78677 | gap 2, opp_overlap 291589 291591 291592, overlap 291580 291591 291592 AAAGAAGGTAAAACA GGTAAATAATGTTGAGTGGTTGA TCA TCAACCAC-CAAC-CTATTTTCC AACTTTGTGCATAGC TERM 344 291591 - 291620 + F 77 -8.7 -3.68071 | gap 1, opp_overlap 291591 291582 291580 291592, overlap 291589 291592 AAAACAGGTAAATAA TGTTGAGTGGTTGA TCA TCAACCAC-CAACC TATTTTCCAACTTTG TERM 345 291620 - 291591 - f 82 -8.7 -4.03611 | gap 1, opp_overlap 291589 291591 291592, overlap 291582 291580 291592 AAAACAGGTAAATAA TGTTGAGTGGTTGA TCA TCAACCAC-CAACC TATTTTCCAACTTTG TERM 346 291592 - 291619 + F 84 -12.2 -2.8012 | gap 1, opp_overlap 291592 291591 291582 291580, overlap 291591 291589 AAACAGGTAAATAAT GTTGAGTGGTTGA TCA TCAACCAC-CAAC CTATTTTCCAACTTT TERM 347 291619 - 291592 - f 85 -12.2 -3.0054 | gap 1, opp_overlap 291591 291589 291592, overlap 291591 291582 291580 AAACAGGTAAATAAT GTTGAGTGGTTGA TCA TCAACCAC-CAAC CTATTTTCCAACTTT rplR 291674 - 292030 + | ribosomal protein L18 rpsE 292048 - 292542 + | ribosomal protein S5 rpmD 292556 - 292738 + | ribosomal protein L30 TERM 348 292787 - 292735 - f 82 -8.8 -4.0802 | opp_overlap 292732 292739 292786, overlap 292739 292743 292779 292785 AGTTGAAGAAGTAAA CTA-ATGAAGTTTTAGGGGATGTGCA CTG TAC-CATCCCCTAAAACTAGATATAG TCATCTATGATGACA TERM 349 292739 - 292782 + F 76 -9.8 -2.85606 | gap 1, opp_overlap 292739 292735 292743 292779, overlap 292732 GAAGAAGTAAACTAA TGAAGTTTTAGGGGAT-GTGC ACT GTACCATCCCCTAAAACTAGA TATAGTCATCTATGA TERM 350 292782 - 292739 - f 82 -9.8 -3.65261 | gap 1, opp_overlap 292732 292739, overlap 292735 292743 292779 GAAGAAGTAAACTAA TGAAGTTTTAGGGGATGTGCA CTG TAC-CATCCCCTAAAACTAGA TATAGTCATCTATGA TERM 351 292778 - 292743 - f 100 -15 -3.51804 | gap 1, opp_overlap 292739 292732, overlap 292739 292735 AAGTAAACTAATGAA GTTTTAGGGGATGTGCA CTG TAC-CATCCCCTAAAAC TAGATATAGTCATCT TERM 352 292801 - 292787 - f 71 -8.6 -3.10531 | opp_overlap 292732 292786, overlap 292779 292785 CTAAAACTAGATATA GTCATC TAT GATGAC ATCGTATAGGCGAGT rplO 292883 - 293323 + | ribosomal protein L15 SPH_0343 293336 - 294646 + | preprotein translocase, SecY subunit TERM 353 294671 - 294649 - f 100 -12.2 -4.92791 | overlap 294661 CAGAACAGAATAAAA GTATTTACTG AAT CAGTAAATAC TGAGGGAGTGGAGGT TERM 354 294677 - 294723 + F 71 -6.7 -4.1922 | gap 1, opp_overlap 294692, overlap 294673 CAGTAAATACTGAGG GAGTGGAGGTTTAAACTCTGAC ATTT GTAAGAGTT-GGATCTCCCCTC TTCTATTTTGTTTTT SPH_0344 294797 - 295435 + | adenylate kinase infA 295552 - 295770 + | translation initiation factor IF-1 rpmJ 295795 - 295911 + | ribosomal protein L36 rpsM 295929 - 296294 + | ribosomal protein S13p/S18e rpsK 296312 - 296695 + | ribosomal protein S11 TERM 355 297582 - 297572 - g 79 -5.4 -4.9792 | GATTTGACAGAAAAA TCTG AAG CAGA GATGATGAAAGTACG rpoA 296738 - 297673 + | DNA-directed RNA polymerase, alpha subunit rplQ 297685 - 298071 + | ribosomal protein L17 TERM 356 298239 - 298189 - f 84 -12.1 -2.8547 | opp_overlap 298189 AGTTGGGATAGTAGA CGCTTGTTTACGAAATTGTTTTT TTCTT AAGAACAACTTCGTAAGCAGGCG TTTTTGAGTATTTTC TERM 357 298189 - 298239 + F 100 -16.5 -4.80396 | opp_overlap 298189 AGTTGGGATAGTAGA CGCTTGTTTACGAAATTGTTTTT TTCTT AAGAACAACTTCGTAAGCAGGCG TTTTTGAGTATTTTC SPH_0351 298336 - 298602 + | ACT domain-containing protein SPH_0352 298612 - 299949 + | hypothetical protein TERM 358 300173 - 300190 + F 74 -3.3 -5.22137 | overlap 300168 TAATCTCCTTCAAAA GTCGCCT GTAT GGGTGGC TTTTATTTTATCATT SPH_0353 300239 - 300931 + | phosphoglycerate mutase family protein TERM 359 301017 - 300993 - T 89 -6.4 -5.64304 | gap 1, opp_overlap 300993 CAAGATAAGAAAAAA CAGCCG-AGGG TACT CCTTTCGGCTG TTTTTGATGTGGAAA TERM 360 300993 - 301017 + T 100 -10 -4.8048 | opp_overlap 300993 CAAGATAAGAAAAAA CAGCCGAGGG TACTC CTTTCGGCTG TTTTTGATGTGGAAA SPH_0356 303767 - 302676 - | lactose transport ATP-binding protein LacK TERM 361 304574 - 304587 + r 73 -3.9 -5.09259 | TGTTTTGATATTCTT TGATA ACAT TATCA TTTTCTTTTGAAATA TERM 362 305134 - 305108 - R 81 -6 -4.84017 | overlap 305095 AATTCTCTACAAAAA GAAGAATAGC CTATTTT ACTATTCTTC CGAGTAATTTCAATT SPH_0362 306256 - 305873 - | two-component sensor kinase YesM TERM 363 306517 - 306490 - R 73 -4.2 -4.90471 | opp_overlap 306490, overlap 306485 AGGTAAAATAGAAAA GGTTTGGTTAAA ATTT TTTAGCTAAACC TTTTGAAAAGTTAAG TERM 364 306490 - 306517 + r 85 -8.6 -4.11484 | opp_overlap 306490 306485 AGGTAAAATAGAAAA GGTTTGGTTAAA ATTT TTTAGCTAAACC TTTTGAAAAGTTAAG SPH_0363 307365 - 306589 - | pyruvate formate-lyase 3 TERM 365 307832 - 307817 - g 83 -6.2 -5.12785 | opp_overlap 307816 CAAGCAAAAAAGAAA TGTTAC GATT GTAACA AATTCATTTTTTATA SPH_0364 307488 - 308234 + | putative HTH-type transcriptional regulator YciT SPH_0365 308247 - 309227 + | transcriptional regulator TERM 366 309231 - 309253 + F 93 -7.8 -5.67529 | opp_overlap 309231 309232 309234, overlap 309232 CTAGGTGAGTGAAAA TGATAGACTG ATT CAGTTTATCG TTTTTCTTTTTAGTT TERM 367 309232 - 309252 + F 85 -9.1 -3.96857 | opp_overlap 309232 309231 309234, overlap 309231 TAGGTGAGTGAAAAT GATAGACTG ATT CAGTTTATC GTTTTTCTTTTTAGT TERM 368 309613 - 309599 - g 70 -2.8 -5.01553 | AATCTACAAACAAAA TTCTTG GCA CAGGAA GCGTCTGGTACAAAG SPH_0366 309422 - 309742 + | phosphotransferase system sugar-specific EIIA component TERM 369 309755 - 309740 - f 80 -4.8 -5.27923 | opp_overlap 309740 GAACTTCATAAAAAA TAATAC TAGA GTATTA TCATTGTTATTAACA TERM 370 309865 - 309855 - g 73 -5.4 -4.52347 | TAAATAATATGAAAA TTGC AGC GCAA GCTAGTGGAGTTGAG SPH_0367 309788 - 310096 + | phosphotransferase system sugar-specific eiib component SPH_0368 310113 - 311411 + | lichenan permease IIC component TERM 371 313224 - 313209 - g 73 -7.6 -4.07687 | ATTGGTCGTGGAAAA CACCTT AAAG AAGGTG GAGCAGTATATGATT SPH_0369 311562 - 314000 + | pyruvate formate-lyase TERM 372 314560 - 314592 + G 72 -4.7 -4.67011 | opp_overlap 314549, overlap 314559 314563 ATAATGCTTTAGCTG CAGGTGCGCATGCTG TTA CAGCAGGAGCAGATG TTTTTGAATCAGCTT SPH_0370 314019 - 314687 + | fructose-6-phosphate aldolase TERM 373 315623 - 315612 - g 89 -4.4 -5.61596 | AGTTTTACAAAAAAA TTGG TATG CCAA CAACTCTAAAAGAAA SPH_0371 314705 - 315793 + | glycerol dehydrogenase (gldh) TERM 374 315802 - 315826 + F 93 -8.7 -4.72497 | opp_overlap 315802 AAAATAAACAATAAG GACTACTGTTT TCC AAATGGTAGTC TTTTATTGATCCCTG TERM 375 317489 - 317469 - g 70 -8.3 -3.2964 | overlap 317474 AAAGGCTGTGGACAA GAGAAGGTA ACC TACCGTCTC CGCGACTGGCTCTTT leuS 316248 - 318749 + | leucyl-tRNA synthetase TERM 376 318873 - 318838 - f 100 -9.2 -5.27335 | opp_overlap 318841, overlap 318841 GTTGTGAAATAAAAA GAAGTAACTCTAGAGT ATGA ACTTTAGAGTTACTTT TAGAATAGGTCAGAA TERM 377 318870 - 318841 - f 100 -10.9 -4.72696 | opp_overlap 318841, overlap 318838 GTGAAATAAAAAGAA GTAACTCTAGAGT ATGA ACTTTAGAGTTAC TTTTAGAATAGGTCA TERM 378 318841 - 318870 + F 100 -13.1 -4.14739 | opp_overlap 318841 318838 GTGAAATAAAAAGAA GTAACTCTAGAGT ATGA ACTTTAGAGTTAC TTTTAGAATAGGTCA SPH_0373 318888 - 319730 + | hypothetical protein TERM 379 319822 - 319862 + G 73 -6.9 -4.15044 | CAGATGATTGGTGAG TCAATGGAAGGTTATACAC CCG GTGCACTGCCTTCTATTGA TTTCTTAGAAGGGCG SPH_0374 319786 - 320481 + | acetyltransferase SPH_0375 320493 - 320909 + | acetyltransferase TERM 380 321050 - 321033 - f 79 -9.1 -3.3482 | opp_overlap 321033 CAATCTCCTAATGAA GCCACCC AATC AGGTGGC TTTTTTGCGTGGTGA TERM 381 321033 - 321050 + F 90 -8.4 -5.1101 | opp_overlap 321033 CAATCTCCTAATGAA GCCACC CAATCA GGTGGC TTTTTTGCGTGGTGA TERM 382 321223 - 321242 + F 100 -9.3 -5.15381 | overlap 321238 321240 AATAATCTCCCTTAA CTCCACC CAATCA GGTGGAG TTTTTTAGCTCTATT TERM 383 321680 - 321713 + F 100 -11.1 -5.04987 | opp_overlap 321680 TCATAGGCTAGAAAA GACCCCAAGCTCA CGACCAAA TAAGCTTGGGGTC TTTTTTGACACTATT TERM 384 321713 - 321680 - f 100 -14 -4.41548 | opp_overlap 321680 TCATAGGCTAGAAAA GACCCCAAGCTCAC GACCAA ATAAGCTTGGGGTC TTTTTTGACACTATT TERM 385 321893 - 321910 + F 86 -4.8 -5.72622 | opp_overlap 321887 GTGCTAAACTTAGGA GTCACC CAATCA GGTGGC TTTTTTGTTTGTGGC ruvB 321950 - 322948 + | holliday junction DNA helicase RuvB SPH_0377 322929 - 323501 + | hypothetical protein TERM 386 323600 - 323623 + F 82 -4.5 -5.41143 | opp_overlap 323603 323605, overlap 323603 323619 TCTCCCTATAAAAAT AAAGTCGCC CAATCA GGCGGCTTA TTTTTTTGAAAAATG TERM 387 323620 - 323603 - f 75 -4.7 -4.96501 | opp_overlap 323600 323603 323619, overlap 323605 CCCTATAAAAATAAA GTCGCCC AATC AGGCGGC TTATTTTTTTGAAAA TERM 388 323603 - 323620 + F 77 -6.2 -4.79949 | opp_overlap 323603 323605, overlap 323600 323619 CCCTATAAAAATAAA GTCGCC CAATCA GGCGGC TTATTTTTTTGAAAA TERM 389 323972 - 323959 - g 73 -6.7 -4.18018 | TTTTTCTACGGAAAA CTGGA CCCG TCCAG ATCAGGAAGTCAAGT uppS 323732 - 324490 + | di-trans,poly-cis-decaprenylcistransferase cdsA 324499 - 325302 + | phosphatidate cytidylyltransferase TERM 390 325366 - 325395 + G 72 -8.5 -3.53444 | overlap 325372 GTTTTTGGGATTATT GTAGTGGTGCACG AGTT CGGGCACTTCTAC TTTGCCAAGAAATCA TERM 391 326045 - 326033 - g 70 -7.7 -3.61764 | TTAGCAACTGGGAAA GCTTG ATC CAAGC TGTGGAAACAGAAAC rseP 325324 - 326583 + | RIP metalloprotease RseP TERM 392 328229 - 328219 - g 79 -5.4 -4.96848 | GCCTTGACAGAAAAA CTTG AAG CAAG CTTGATGGGAGCTGG proS 326596 - 328449 + | prolyl-tRNA synthetase TERM 393 328471 - 328501 + F 77 -3.4 -5.43414 | opp_overlap 328471 TAATCAGAAGAAAAA CAAGGAAAAAAT GTAACTA GTTTTTACCTTG TTTTTTCTGTATAAT TERM 394 328501 - 328471 - f 72 -2.7 -5.24416 | opp_overlap 328471 TAATCAGAAGAAAAA CAAGGAAAAAA TGTAACTAG TTTTTACCTTG TTTTTTCTGTATAAT TERM 395 328822 - 328840 + G 71 -3.8 -4.91511 | opp_overlap 328826 AAGGCTGTGGAAAAG TCAACACT CAA GGTGTGGA TTTTTATCGTAAGGT SPH_0382 328548 - 329927 + | glycosy hydrolase family protein TERM 396 329964 - 329932 - f 75 -8.5 -3.37188 | opp_overlap 329934, overlap 329931 329934 ATGGATTTTAAAAAG GACTCTGACTGATTA TCC CAATCGGTCAGAGTT TTTTGCTTACAGGAG TERM 397 329962 - 329934 - f 86 -11.1 -3.25166 | opp_overlap 329934, overlap 329932 329931 GGATTTTAAAAAGGA CTCTGACTGATTA TCC CAATCGGTCAGAG TTTTTTGCTTACAGG TERM 398 329934 - 329962 + F 100 -12.6 -5.26875 | opp_overlap 329932 329931 329934 GGATTTTAAAAAGGA CTCTGACTGATT ATCCC AATCGGTCAGAG TTTTTTGCTTACAGG TERM 399 330377 - 330393 + G 80 -6.5 -4.70583 | overlap 330385 AATGCTCACCCACAC CGCTCTG AGA CAGAACG TTTTGTCTTGGTGCA glmS 330119 - 331927 + | glutamine-fructose-6-phosphate transaminase (isomerizing) TERM 400 331937 - 331952 + T 79 -5.4 -5.18726 | opp_overlap 331937 331939, overlap 331931 GAATAAGCTAAAAAA GTCTAG TTAT CTAGGC TTTTTCTTGTGAGCA TERM 401 331952 - 331937 - T 74 -3.2 -5.2166 | opp_overlap 331937 331931, overlap 331939 GAATAAGCTAAAAAA GTCTAG TTAT CTAGGC TTTTTCTTGTGAGCA SPH_0384 332141 - 331947 - | chlorohydrolase TERM 402 332100 - 332082 - G 72 -10.4 -2.61383 | overlap 332081 AGTTCTATCCACAAC CTCAAAAC ACT GTTTTGAG CAGCCTGCAGCTAGC SPH_0385 332198 - 333247 + | oxidoreductase TERM 403 333275 - 333255 - T 84 -5.5 -5.45652 | AGGCTTAATAAAAAA TCCTAATCA AGT TTATTAGGA CAACAAATATTGTAC TERM 404 333300 - 333325 + T 100 -12.6 -4.96848 | opp_overlap 333300 333296 TTGTACGAAAATTAA TCCCCCGAGC TATAAT GCTTGGGGGA TTTTTCTATAGGAGG TERM 405 333325 - 333300 - T 87 -10.4 -3.71672 | opp_overlap 333300, overlap 333296 TTGTACGAAAATTAA TCCCCCGAGC TATAAT GCTTGGGGGA TTTTTCTATAGGAGG TERM 406 333337 - 333355 + T 95 -6 -6.04324 | GGGATTTTTCTATAG GAGGGCTA GTT TAGTTCTC TTTTTTATTTTTTAG SPH_0386 337210 - 333347 - | pullulanase, extracellular TERM 407 336891 - 336922 + g 80 -4.5 -5.35365 | gap 1 GCTGGATCGGCTGGG CTTGCAGCAGGAGT AGTTG GCTC-TGTTGCAGG TTTTTCTTCTGTTTT TERM 408 337781 - 337726 - g 76 -3.2 -5.30686 | opp_overlap 337747 337756, overlap 337738 AACAGTCATAAAAAA GTTCAAACAAACGTTTCTTCACCACA AAAA CGTGGTGTTGCAACTCGTGTTGGAAC AATGACACCTAGAAA rpsL 337627 - 338040 + | ribosomal protein S12 TERM 409 338422 - 338406 - g 79 -9.5 -3.68024 | GTGGTGAACACACAA TGCAAGA CCG TCTTGCA AAAGAAATCTTGGAT rpsG 338060 - 338530 + | ribosomal protein S7 TERM 410 338872 - 338892 + F 100 -9.7 -5.08601 | opp_overlap 338872 TGAAAACATTGAGAA CGGGTAGGT CCT GCCTATCCG TTTTTATTAAAATCA fusA 338955 - 341036 + | translation elongation factor G TERM 411 341051 - 341021 - f 77 -4.9 -5.16071 | gap 1, opp_overlap 341043 341050 AATCATTAAGAAAAA TAAAGGTGAAGACT AATC AGTCCT-ACCTCTA GAAGGAAGTCACTTA TERM 412 341050 - 341080 + F 90 -12 -3.34398 | opp_overlap 341021 341055 341059, overlap 341043 341055 AATCAGTCCTACCTC TAGAAGGAAGTCAC TTA GTGGCTTCCTTTTG TCTTTAGAAAACACC TERM 413 341075 - 341055 - f 79 -9.7 -3.31144 | opp_overlap 341043 341050 341055, overlap 341059 GTCCTACCTCTAGAA GGAAGTCAC TTA GTGGCTTCC TTTTGTCTTTAGAAA TERM 414 341055 - 341075 + F 100 -11.9 -4.78848 | opp_overlap 341055 341059, overlap 341043 341050 GTCCTACCTCTAGAA GGAAGTCAC TTA GTGGCTTCC TTTTGTCTTTAGAAA polC 341140 - 345531 + | DNA polymerase III, alpha subunit TERM 415 345560 - 345590 + F 79 -5.5 -5.20735 | opp_overlap 345559 345557 345560 AATCTATTAAAAGAG GCTAACGTATATC CAATA GATTTACATTAGC TTTCTTTTTTGTTAA SPH_0391 345633 - 345896 + | addiction module antitoxin TERM 416 346080 - 346090 + G 79 -6.8 -4.61873 | TGAATGCCATACCCA GCCA GAT TGGC TTTTGGTTTATAAAG SPH_0392 345889 - 346167 + | DNA damage inducible protein SPH_0393 346188 - 346340 + | hypothetical protein SPH_0394 346362 - 347603 + | aminopeptidase PepS TERM 417 347610 - 347651 + T 100 -11.1 -4.56969 | opp_overlap 347610 GCAAATTAGCAAAAA TATCCCAAAAGCAAATTGA ATTG TAAGTATGCTTTTGGGATA TTTATTTATAAGATT TERM 418 347651 - 347610 - T 95 -8.9 -4.84363 | opp_overlap 347610 GCAAATTAGCAAAAA TATCCCAAAAGCAAATTGA ATTG TAAGTATGCTTTTGGGATA TTTATTTATAAGATT SPH_0395 348637 - 347657 - | HNH endonuclease domain-containing protein TERM 419 347920 - 347934 + g 72 -8.6 -3.60792 | TTGCAATATACTCTG CTGTTG CTT CAACAG TTTCACCGTTAAACA TERM 420 348125 - 348141 + g 71 -6.7 -3.99228 | TATTTGTTTCTCTCG TTGATAA AGA TTATCAA TTGTGTTTTCCATTC SPH_0396 348752 - 349474 + | RNA pseudouridine synthase family protein TERM 421 349488 - 349523 + F 82 -5.5 -5.32565 | AATTTGATTTATATT CGAAAAAGGTGAGGG AGAATG TCCTTACCTTTTATG TTTTTTAGTTGCTTC SPH_0397 349586 - 350920 + | aminopeptidase C (Bleomycin hydrolase) TERM 422 350935 - 350960 + T 88 -6.9 -4.93547 | opp_overlap 350935 AAAGCATAGAAAAAA GGAATCAGATT TTAG AACCTGGTTCC TTTTTAGTTGCTTGA TERM 423 350960 - 350935 - T 93 -6.9 -5.43487 | opp_overlap 350935 AAAGCATAGAAAAAA GGAATCAGATT TTAG AACCTGGTTCC TTTTTAGTTGCTTGA SPH_0398 351887 - 350976 - | PTS system mannose/fructose/sorbose family EIID subunit SPH_0399 352714 - 351911 - | PTS system sorbose-specific EIIC component SPH_0400 353731 - 352742 - | mannose-specific phosphotransferase system component IIAB TERM 424 353838 - 353850 + r 71 -3.5 -5.10968 | opp_overlap 353838, overlap 353828 TTTATCATAAAAAAT TAAAA AAT TTTTA TTTTTGTATGTTGAT TERM 425 353944 - 353914 - R 91 -12.8 -3.21063 | opp_overlap 353908 353920, overlap 353907 353920 TATTTAAATTTAATA TAAAAAGTTGGAAG AAG CTTCCAACTTTTAA AATAGGTTTCTATTA TERM 426 353938 - 353920 - R 100 -11.8 -5.1167 | opp_overlap 353908 353920, overlap 353914 AATTTAATATAAAAA GTTGGAAG AAG CTTCCAAC TTTTAAAATAGGTTT TERM 427 353920 - 353938 + r 100 -11.8 -4.15854 | opp_overlap 353920 353914, overlap 353908 AATTTAATATAAAAA GTTGGAAG AAG CTTCCAAC TTTTAAAATAGGTTT SPH_0401 354981 - 353962 - | alcohol dehydrogenase, propanol-preferring TERM 428 354279 - 354299 + g 85 -3.9 -5.68438 | opp_overlap 354264 CAGCAGTTACGACAG CTGAATGAG CTC CTCCATCAG TTTTTTCTTTAATGA TERM 429 355197 - 355178 - R 100 -12.2 -4.13711 | opp_overlap 355177 355174 TGAAAAGAGCACAAA GACCAGCT TGCA AGCTGGTC ATACTCTTCGAAAAT TERM 430 355264 - 355244 - R 70 -8.3 -3.32963 | overlap 355245 AGCTTCATCTTACAA CCTCAAAGC AGT GCTTTGAGC AACCTACGGCTAGCT TERM 431 355263 - 355245 - R 84 -11.8 -2.59564 | overlap 355244 GCTTCATCTTACAAC CTCAAAGC AGT GCTTTGAG CAACCTACGGCTAGC SPH_0402 356133 - 355321 - | Cof family protein TERM 432 355854 - 355866 + g 87 -4.9 -5.37043 | opp_overlap 355854 CTGAACGTTGAACCA TATCT AGC AGATA TTTTTTGTCTACAGT TERM 433 357266 - 357252 - g 77 -8.6 -3.92373 | overlap 357264 TATTGTAGCGACAAA TGGTGA AAA TCACCA ATCAGCCAAATTGGA SPH_0403 356269 - 357741 + | xanthine/uracil permease family protein TERM 434 357754 - 357767 + F 80 -9.5 -3.68256 | overlap 357749 357754 TAATAGAATGACCCA GGGGG ATTT CCCCC CTTTTTTAATACAAA TERM 435 357754 - 357768 + F 95 -8.5 -5.14563 | overlap 357749 357754 TAATAGAATGACCCA GGGGG ATTTC CCCCC TTTTTTAATACAAAG TERM 436 357929 - 357917 - g 77 -7.7 -4.19746 | opp_overlap 357917, overlap 357920 TTGACTTTAAAAGAA GTAGC CCT GCTAC AGTCAGGGCTGATAG SPH_0404 357794 - 358501 + | caax amino protease family protein TERM 437 358549 - 358567 + F 78 -10.4 -2.61383 | overlap 358548 ACTAGCCGCAGGCTG CTCAAAAC ACT GTTTTGAG GTTGTAGATAAGACT TERM 438 358595 - 358579 - f 87 -10.9 -3.48924 | opp_overlap 358576 TGAGGTTGTAGATAA GACTGAC GAA GTCAGTC ACATATATACGGCAA TERM 439 358686 - 358719 + G 90 -8.3 -4.91511 | overlap 358714 ACTTGTTTCTACTGG GAAAAAGATGAATGC AATC GTGTCCATCTTTTTC TTTTTATGGTAAAAT SPH_0405 358618 - 358731 + | hypothetical protein folP 358746 - 359726 + | dihydropteroate synthase TERM 440 360309 - 360295 - g 84 -10 -3.79747 | opp_overlap 360302 GCAGGTATTATCAAA CAAGGG ATG CCCTTG GTAACAGGGCGTATT SPH_0407 359728 - 361050 + | dihydrofolate synthetase folE 361031 - 361585 + | GTP cyclohydrolase I TERM 441 361609 - 361589 - f 86 -8.3 -4.83169 | opp_overlap 361592, overlap 361592 ATGGGGCTATAAAAA GAATCCGCT TCA AGCGGATTT TTCTAGAAAGGAATC TERM 442 361606 - 361592 - f 100 -10 -4.52873 | opp_overlap 361592, overlap 361589 GGGCTATAAAAAGAA TCCGCT TCA AGCGGA TTTTTCTAGAAAGGA TERM 443 361592 - 361606 + F 100 -10 -4.82901 | opp_overlap 361592 361589 GGGCTATAAAAAGAA TCCGCT TCA AGCGGA TTTTTCTAGAAAGGA SPH_0409 361628 - 362440 + | bifunctional folate synthesis protein TERM 444 362446 - 362481 + T 100 -12.1 -4.62783 | opp_overlap 362446, overlap 362438 GAAAAAATAGAAAAA CTCTAGTTTTCAGTT ACTTGC AACTGAAGGCTAGAG TTTTTAAAATAGGTC TERM 445 362481 - 362446 - T 93 -8.4 -5.41787 | opp_overlap 362438 362446 GAAAAAATAGAAAAA CTCTAGTTTTCAGTTA CTTG CAACTGAAGGCTAGAG TTTTTAAAATAGGTC SPH_0410 362802 - 362485 - | hypothetical protein rplM 363158 - 363604 + | ribosomal protein L13 rpsI 363624 - 364016 + | ribosomal protein S9 TERM 446 364043 - 364062 + T 89 -6.4 -5.75599 | opp_overlap 364043 TACTATACTTATACA GAGCACCT TTCG GGGTGTTC TTTTTTTATACTTTC TERM 447 364199 - 364225 + T 95 -8.7 -5.43487 | opp_overlap 364199 TATCAATGTTTCAAA GCACTCAAAGG TTTGC CCTATGGGTGC TTTTTTCTATACTTT SPH_0413 365157 - 364279 - | phage integrase family integrase/recombinase SPH_0414 366088 - 365399 - | hypothetical protein TERM 448 366174 - 366152 - R 83 -7.8 -4.72863 | opp_overlap 366152 366166 TTAAAGAAATGAAAA TCTAAACAGT AGA ACTGATTAGA TTAGTGTTGTTCTTT SPH_0415 366585 - 366175 - | hypothetical protein SPH_0416 367532 - 366642 - | hypothetical protein TERM 449 368019 - 367986 - g 87 -8.4 -4.59653 | gap 1, opp_overlap 367986 AACTAAAAAGAGAAA TGCAGACTCATACTT TAAAC AAGT-TGAATCTGCA TTGAATCAATTAAAA SPH_0417 367735 - 368475 + | hypothetical protein SPH_0418 368591 - 368947 + | hypothetical protein TERM 450 369213 - 369232 + T 89 -6.4 -5.75599 | opp_overlap 369213 TACTATACTTATACA GAGCACCT TTCG GGGTGTTC TTTTTTTATACTTTC SPH_0419 369723 - 369502 - | phage integrase family integrase/recombinase SPH_0420 369947 - 369828 - | hypothetical protein TERM 451 369993 - 369955 - R 74 -5.5 -4.77567 | gap 1, opp_overlap 369955 369954 ATTTCCATAATAAAA CGCATATTATCAAGGT TGTTCAAT ACCT-GATACTATGCG CTTTTCTGATTTTAA TERM 452 370008 - 370027 + r 75 -5 -4.95876 | opp_overlap 370010, overlap 370010 GCTTTTCTGATTTTA AAGACTGA TTGC TCAGTCTC TTTTTCATTATAATT TERM 453 370010 - 370025 + r 78 -7.6 -4.08682 | opp_overlap 370010, overlap 370008 TTTTCTGATTTTAAA GACTGA TTGC TCAGTC TCTTTTTCATTATAA TERM 454 370025 - 370010 - R 71 -7.6 -3.59979 | opp_overlap 370010 370008 TTTTCTGATTTTAAA GACTGA TTGC TCAGTC TCTTTTTCATTATAA SPH_0421 371487 - 370279 - | ATPase SPH_0422 371575 - 371700 + | hypothetical protein SPH_0423 371892 - 372068 + | hypothetical protein TERM 455 372414 - 372431 + F 78 -7.7 -4.1472 | opp_overlap 372414, overlap 372409 CAGAATAATGAAAAA CGCATCA AAAA TGGTGCG TTCTGTTTTTATGCT TERM 456 372431 - 372414 - f 77 -5.5 -5.01845 | opp_overlap 372414 372409 CAGAATAATGAAAAA CGCATCA AAAA TGGTGCG TTCTGTTTTTATGCT SPH_0424 372469 - 374682 + | glycosy hydrolase family protein TERM 457 374796 - 374821 + T 77 -4.7 -5.20783 | ACATAGACTTTACAA CACTTCATGTT TCAT ATCATGGGGTG TTTTTCTATTTAAGT TERM 458 374896 - 374854 - T 85 -6.6 -5.29385 | gap 1, opp_overlap 374854 374886 AAGCCAATCAAAAAA TCTCACTATTCATCAGGTT AAAGGA AACCTAATCA-TAGTGAGA TTGTGAATTATAGTA SPH_0425 375380 - 374904 - | peroxiredoxin Hyr1 TERM 459 375630 - 375616 - g 75 -2.8 -5.31519 | opp_overlap 375616 375624, overlap 375624 ACATGCAAACAAAAA CAAAGA AGC TCATTG TGAGTTTGTCTTCAC TERM 460 378148 - 378177 + G 70 -9.5 -2.59028 | opp_overlap 378146, overlap 378140 CTGAAACCCAAAGTG TCTTTTTAGAATC GTCC GATTCGAAAAAGA ATATTGGTTACTTTT TERM 461 378592 - 378578 - g 70 -8.6 -3.4072 | overlap 378590 GATTGCCTACTATAA TCCTGA AAC TCAGGA ATCAGCTCCAGATCA SPH_0426 375603 - 378806 + | hyaluronate lyase TERM 462 378882 - 378857 - T 86 -4.8 -5.63645 | opp_overlap 378857 GGAAAATAGAAAAAA TCCGAAGA AGGCCAAATA TCTTCGGA TTTTTCTTTTAAAAA TERM 463 378857 - 378882 + T 83 -4.8 -5.45802 | opp_overlap 378857 GGAAAATAGAAAAAA TCCGAAGA AGGCCAAATA TCTTCGGA TTTTTCTTTTAAAAA TERM 464 378899 - 378918 + T 100 -9.4 -5.32565 | opp_overlap 378899, overlap 378887 TTTTCTTTTAAAAAA GGATAAGT TGAT ACTTATCC TTTTTTACTTCATTA TERM 465 378918 - 378899 - T 100 -9.4 -5.00616 | opp_overlap 378887 378899 TTTTCTTTTAAAAAA GGATAAGT TGAT ACTTATCC TTTTTTACTTCATTA TERM 466 379106 - 379082 - T 82 -7.7 -4.52857 | overlap 379047 379085 379086 AGGTGCGAGACAAAA CAACCACCCGC TAT GCGGGTGCGCG TCGAAGGTTATACCA TERM 467 379103 - 379085 - T 100 -10.2 -4.38141 | overlap 379082 379086 TGCGAGACAAAACAA CCACCCGC TAT GCGGGTGC GCGTCGAAGGTTATA TERM 468 379102 - 379086 - T 93 -13.7 -3.22162 | overlap 379085 379082 GCGAGACAAAACAAC CACCCGC TAT GCGGGTG CGCGTCGAAGGTTAT TERM 469 379891 - 379870 - T 90 -11.5 -3.72051 | opp_overlap 379867 379865, overlap 379852 TTGAACAACGTGAAA GCCAGCGTC TTTA GGCGCTGGC TGATGATTTGGGCTT TERM 470 379923 - 379941 + T 79 -8.8 -3.74012 | opp_overlap 379923, overlap 379926 TAGCTCTGAGATAAA CCACCCGT TAG ACGGGTAG TTATGATTTTATCTG TERM 471 379941 - 379923 - T 93 -11 -4.0371 | opp_overlap 379923 379926 TAGCTCTGAGATAAA CCACCCGT TAG ACGGGTAG TTATGATTTTATCTG TERM 472 379926 - 379938 + T 73 -9.1 -2.94934 | opp_overlap 379923, overlap 379923 CTCTGAGATAAACCA CCCGT TAG ACGGG TAGTTATGATTTTAT SPH_0428 380579 - 379950 - | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase SPH_0429 381590 - 380589 - | 2-keto-3-deoxygluconate kinase SPH_0430 382262 - 381621 - | ribose 5-phosphate isomerase RpiB SPH_0431 383096 - 382281 - | gluconate 5-dehydrogenase (5-keto-D-gluconate 5-reductase) SPH_0432 383368 - 383802 + | phosphotransferase system sugar-specific EII component TERM 473 384819 - 384807 - g 75 -7.7 -3.98204 | opp_overlap 384815 AAAGATATTTATAAA CATGC TAT GCATG CCATGCTTCGTTCCT SPH_0433 383814 - 385004 + | unsaturated glucuronyl hydrolase TERM 474 385477 - 385451 - g 78 -7.3 -4.43681 | CATTTAATACGAAAA CAACTCCAACA GGAAA TGATGGAGCTG TTCAAGTCAACATTA SPH_0434 385015 - 385506 + | N-acetylgalactosamine-specific phosphotransferase enzyme IIB component2 SPH_0435 385521 - 386300 + | phosphotransferase system sugar-specific EII component SPH_0436 386287 - 387105 + | phosphotransferase system sugar-specific EII component yajC1 387105 - 387398 + | preprotein translocase, YajC subunit TERM 475 387407 - 387374 - f 71 -7.7 -3.66921 | gap 1, opp_overlap 387381, overlap 387381 AAGTGTAATGGGAAA GACAAAAGAACTGCTT TTT AAGTAGTTCTTTT-TC TGGTAATAGATAATG TERM 476 387401 - 387381 - f 83 -6.9 -4.79451 | opp_overlap 387381, overlap 387374 ATGGGAAAGACAAAA GAACTGCTT TTT AAGTAGTTC TTTTTCTGGTAATAG TERM 477 387381 - 387401 + F 100 -9.1 -4.93296 | opp_overlap 387374 387381 ATGGGAAAGACAAAA GAACTGCTT TTT AAGTAGTTC TTTTTCTGGTAATAG SPH_0438 387420 - 389321 + | oligohyaluronate lyase TERM 478 389488 - 389475 - g 76 -3.1 -5.32699 | GGAAATATGAAAAAA TGTCC CAAG AGACA CGTGAAAAGATTGAA SPH_0439 389381 - 390382 + | sugar binding transcriptional regulator RegR TERM 479 390455 - 390424 - T 100 -16.1 -5.09762 | opp_overlap 390424 390427 TGTTAAGAAATAAAA TAATCCCACCTAG AACAAG CTAGGTGGGATTA TTTGCCTATGAAATG TERM 480 390424 - 390455 + T 100 -16.1 -3.71378 | opp_overlap 390424, overlap 390427 TGTTAAGAAATAAAA TAATCCCACCTAG AACAAG CTAGGTGGGATTA TTTGCCTATGAAATG TERM 481 390427 - 390452 + T 100 -13.4 -3.98913 | opp_overlap 390424, overlap 390424 TAAGAAATAAAATAA TCCCACCTAG AACAAG CTAGGTGGGA TTATTTGCCTATGAA SPH_0440 390827 - 390492 - | hypothetical protein SPH_0441 391080 - 390838 - | hypothetical protein SPH_0442 391633 - 391091 - | hypothetical protein TERM 482 391546 - 391558 + g 71 -6.2 -4.23674 | opp_overlap 391545, overlap 391540 GGTTACCGATACGAT CGGC CTCAC GCCG TTTGTATTCGTCAAG SPH_0443 391843 - 391649 - | hypothetical protein TERM 483 391965 - 391988 + H 93 -10.4 -3.9712 | TTTGTGGCCTATTTG TCTGACTAGT GCAA GCTAGTCAGA TTTGTGGTAAAATAG mraW 392011 - 392961 + | S-adenosyl-methyltransferase MraW ftsL 392973 - 393290 + | cell division protein FtsL TERM 484 395401 - 395380 - g 78 -7.3 -4.36206 | ATAAGGTAGAAGAAA TTCCAGACA TGTA TGGCTGGAA AAAAGAGACTGCTGA SPH_0446 393294 - 395546 + | penicillin-binding protein 2X mraY 395548 - 396528 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 485 396535 - 396554 + F 100 -12.2 -4.93696 | opp_overlap 396533 TTGAGATAAGAATGG CACCCTGA TGTT TCAGGGTG TTTTTGCTGTTTAAA TERM 486 396617 - 396573 - f 75 -5.1 -5.00616 | opp_overlap 396588, overlap 396575 TTGCTGTTTAAAAAA TATTGGTCAATTAAAGTCAAA TCT CTTGACCTTTTCTGACCAATG TAGTATATTATGAAC TERM 487 396615 - 396575 - f 78 -7.7 -4.13561 | opp_overlap 396588, overlap 396573 GCTGTTTAAAAAATA TTGGTCAATTAAAGTCAAA TCT CTTGACCTTTTCTGACCAA TGTAGTATATTATGA TERM 488 396712 - 396730 + G 72 -10.4 -2.61264 | overlap 396711 GCTAGCTTTAGGCTG CTCAAAAC CCT GTTTTGAG GTTGTAGATAAGGCG TERM 489 396833 - 396789 - g 78 -2.9 -5.46629 | opp_overlap 396791, overlap 396791 AAGAGTTTAAAAAAA TATTGGTCAGTCAAAGTCAAA TCT CTTGATCTTTTCTGACCAATG TAGTATATTATGAAC TERM 490 396831 - 396791 - g 70 -5.5 -4.36089 | opp_overlap 396791, overlap 396789 GAGTTTAAAAAAATA TTGGTCAGTCAAAGTCAAA TCT CTTGATCTTTTCTGACCAA TGTAGTATATTATGA SPH_0448 396665 - 396817 + | hypothetical protein TERM 491 397847 - 397865 + G 72 -9 -3.38272 | AATATCATTCTCTTC TTTGATGA AAT TCATCAAA TTCTCGGTGCTGGTA SPH_0449 397277 - 399382 + | ATP-dependent Clp protease ATP-binding subunit ClpL TERM 492 399437 - 399406 - T 76 -3.7 -5.31275 | opp_overlap 399409, overlap 399409 TTTGAGGATAAAAAA GAAGGAGCCAGCT GAAAAA AACTGGTTCCTTT TGAGGTACGACGGGC TERM 493 399434 - 399409 - T 74 -5.4 -4.74611 | opp_overlap 399409, overlap 399406 GAGGATAAAAAAGAA GGAGCCAGCT GAAAAA AACTGGTTCC TTTTGAGGTACGACG luxS 400160 - 399678 - | S-ribosylhomocysteinase LuxS TERM 494 400017 - 400039 + g 80 -11.4 -2.86164 | GGTAGGGATGGAGTC TTCGTTTGGT TGC ACCAAGCGAA TATCATAATTGGAGA TERM 495 400050 - 400064 + g 74 -6.4 -4.37067 | opp_overlap 400049 GCGAATATCATAATT GGAGAT GAT GTCTCC TTTTGGTCCTGTTTC TERM 496 400245 - 400226 - R 100 -9.3 -4.6645 | overlap 400217 400219 GAGACAGAGAGAAAA CCTCTCC GAGGCT GGAGAGG TTGAAATCTTTACTT SPH_0451 401739 - 400255 - | hypothetical protein TERM 497 400665 - 400676 + g 70 -5.8 -4.46576 | ATTCAAAGGCTAGGG CTGG TCCA CCAG TTTCTTCTGCTTTTT TERM 498 401544 - 401566 + g 79 -9.2 -3.85542 | TCACAACCTCAACCT GCTCTTTCAA TTC TTGCAAGAGC TTGATTTTGTTGTCA SPH_0452 401892 - 403499 + | trehalose-6-phosphate hydrolase (Alpha,alpha-phosphotrehalase) SPH_0453 403659 - 403832 + | putative lipoprotein TERM 499 403902 - 403846 - T 100 -17.1 -2.92037 | gap 1, opp_overlap 403853, overlap 403851 403853 GAAACAAGAACAGGA CAAAAGAGCCTCATAAAAGGTATTGC AACTTG GTAATACCTTTTACGAGGCT-TTTTG ATATGAGCCCATGTT TERM 500 403898 - 403851 - T 100 -13.7 -4.57533 | opp_overlap 403853, overlap 403846 403853 AAGAACAGGACAAAA GAGCCTCATAAAAGGTATTGC AACTTG GTAATACCTTTTACGAGGCTT TTTGATATGAGCCCA TERM 501 403853 - 403896 + T 100 -16.3 -4.8048 | opp_overlap 403851 403846 403853 GAACAGGACAAAAGA GCCTCATAAAAGGTATTGC AACTTG GTAATACCTTTTACGAGGC TTTTTGATATGAGCC TERM 502 403896 - 403853 - T 100 -16.3 -3.87977 | opp_overlap 403853, overlap 403851 403846 GAACAGGACAAAAGA GCCTCATAAAAGGTATTGC AACTTG GTAATACCTTTTACGAGGC TTTTTGATATGAGCC SPH_0454 404670 - 404341 - | transposase TERM 503 404618 - 404640 + g 72 -3.4 -5.0133 | TCTGTTATACTACCT GTTCGCTC ACAATAA GAGAGAAC TTTTTTACGAAAATC TERM 504 404689 - 404725 + H 71 -8.9 -2.96274 | opp_overlap 404688 AAGATTATACCACAT TGTGTACTATATTAGAT TGA AACTAGAATAGTACACA TCTGCTTCTAAAACA SPH_0455 404901 - 406346 + | integral membrane regulatory protein Wzg TERM 505 406639 - 406629 - g 93 -6.8 -5.43866 | overlap 406631 TAAGCTGGAAAAAAA TCGG ATT CCGA CCCTCAATAATAGTC SPH_0456 406348 - 407079 + | tyrosine-protein phosphatase CpsB SPH_0457 407088 - 407780 + | Cps19aC SPH_0458 407790 - 408479 + | tyrosine-protein kinase CpsD SPH_0459 408494 - 409855 + | galactosyl transferase CpsE SPH_0460 409861 - 410604 + | UDP-N-acetyl-D-mannosamine transferase SPH_0461 410601 - 411425 + | Cps19aG SPH_0462 411427 - 412305 + | putative glycosyl transferase SPH_0463 412306 - 413640 + | polysaccharide polymerase Cps19aI SPH_0464 413668 - 415092 + | flippase Wzx SPH_0465 415157 - 416245 + | UDP-N-acetylglucosamine 2-epimerase TERM 506 416381 - 416357 - f 83 -7.3 -4.65916 | TTTATCCTAAGAAAA TTCGTTCATAT TCA ATATGAATGAA AAACAACGAAGAAAG rfbA 416408 - 417277 + | glucose-1-phosphate thymidylyltransferase SPH_0467 417278 - 417871 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 507 418382 - 418355 - g 70 -9.2 -3.2653 | gap 1, opp_overlap 418350, overlap 418350 CCAAGTACAATCCAA GCTCGCCTTACTC ATC GACTAAGGCG-GC TTCAGATTTGATTGT rfbB 417883 - 418932 + | dTDP-glucose 4,6-dehydratase TERM 508 418930 - 418956 + F 72 -8.2 -3.37493 | opp_overlap 418930 418936, overlap 418936 GAGATTATTACAGTA TAAAAAGCAG GAAATAG CTGCTTTTTA TTGCTATATTGGGAA TERM 509 419490 - 419468 - g 73 -10 -2.91695 | overlap 419465 GGTATTTGGAAATTA TGGCAAAAAC TTC GTTTTTACCA TGCAAAATCTTGCGA rfbD 418998 - 419849 + | dTDP-4-dehydrorhamnose reductase TERM 510 420156 - 420143 - f 71 -5.3 -4.46212 | opp_overlap 420143 CCTTTTACGAGAAAA GTTGT TAGA ACAAC CTCTTCTTCATGCGG TERM 511 420868 - 420854 - f 100 -10 -4.2828 | opp_overlap 420854 TGGGACGGAGTAAAA GAGTCC AGT GGACTC TTTTAGCCTAAGCTC TERM 512 420854 - 420868 + F 93 -10 -4.14243 | opp_overlap 420854 TGGGACGGAGTAAAA GAGTCC AGT GGACTC TTTTAGCCTAAGCTC TERM 513 421154 - 421113 - f 100 -9.7 -4.57581 | gap 1, opp_overlap 421113 AGTGCAAATAAGAAA TCTCCAGATTAG-GAACT ATCCGTG AGTTCTCTAGTCTGGAGA TTTTTCAATATACTT TERM 514 421113 - 421154 + F 100 -11.9 -4.72333 | gap 1, opp_overlap 421113 AGTGCAAATAAGAAA TCTCCAGATTAG-GAACT ATCCGTG AGTTCTCTAGTCTGGAGA TTTTTCAATATACTT TERM 515 422188 - 422242 + F 80 -6.7 -4.80959 | overlap 422187 GGTATAATGTTCTTG CATCTCTGTGCCTTTCCTTG-TGTTTG TGG TGAACAACAAGTATA-GCACAGAGGTG TTTTCTTATACCTTA TERM 516 422331 - 422310 - f 95 -13.1 -3.64703 | opp_overlap 422319 GTTTTTTCAGCTAAA CCAAGGCTA TGAT TAGCCTTGG CCACCTAGCCTAACA TERM 517 423091 - 423077 - g 82 -8.6 -4.17556 | opp_overlap 423076 TACACTTTGAACAAA CCAGAA AGC TTCTGG AATTCTAAGACAACC TERM 518 423830 - 423794 - g 77 -5.2 -4.93318 | gap 1, overlap 423795 423796 423799 423821 423824 TACAATCCAGAAAAA GCCAAGGCTGAATTTGC TAAA GCTAAATCAGCCTT-AC AAGCAGAAGGTGTGA TERM 519 423826 - 423799 - g 72 -8.4 -3.49077 | overlap 423796 423794 423795 423821 423824 TCCAGAAAAAGCCAA GGCTGAATTTGC TAAA GCTAAATCAGCC TTACAAGCAGAAGGT SPH_0474 422552 - 424534 + | oligopeptide binding protein TERM 520 424546 - 424594 + F 73 -7.8 -3.85817 | opp_overlap 424546 424548, overlap 424555 424583 ATAACTGTTGCAAAA TATAAGAAAGGATTTAGTATTT CTCTT GAATGCTGAATCCTTTTTTACA TTTGTAAAGAAAGAT TERM 521 424555 - 424585 + F 85 -6.3 -5.24449 | opp_overlap 424548 424546, overlap 424546 424583 GCAAAATATAAGAAA GGATTTAGTATTT CTCTT GAATGCTGAATCC TTTTTTACATTTGTA TERM 522 425696 - 425677 - g 91 -9.4 -4.63527 | TGACCATCTTAAAAA TGAGAAGA AGAT TCTTCTCA AGGCGGGCTCTTATG TERM 523 425780 - 425766 - g 82 -7.8 -4.59511 | AAGAGGGGGTAAAAA CAGAGG ATA CCCCTG CTGAAAAAGAAACAG TERM 524 426978 - 426966 - g 75 -2.7 -5.27477 | ACTTCAATGAAAAAA TTCTC CGT AAGAA TCCAGATGGAAGCTA SPH_0475 424907 - 430138 + | endo-alpha-N-acetylgalactosaminidase TERM 525 430237 - 430214 - T 100 -15.4 -5.02502 | opp_overlap 430214 TATAGTACAGAAAAA GCCTGAGAAG ATGT CTTCTCAGGC TTTTGTTAAGCACAT TERM 526 430214 - 430237 + T 100 -15.4 -4.63486 | opp_overlap 430214 TATAGTACAGAAAAA GCCTGAGAAG ATGT CTTCTCAGGC TTTTGTTAAGCACAT TERM 527 430298 - 430277 - T 100 -13.1 -4.4648 | opp_overlap 430274 430272 430266 AGTGCTATGACAAAA TCACCCAGA AAAA TCTGGGTGA TAAATGTTATGGTTG SPH_0476 432464 - 430305 - | penicillin-binding protein 1A TERM 528 431103 - 431125 + g 77 -7.8 -4.27259 | CATTACAGGATAGTC GATTCCTAAA CCA TTTAGGAAAC TTTTAGCTCTATCTA TERM 529 432101 - 432114 + g 80 -8.1 -4.34789 | overlap 432099 GGGTAAGGGTTGATC CTCCC TGGA GGGAG TTGTTTTGTAAGTTA TERM 530 432199 - 432184 - G 72 -3.2 -5.1101 | CGATGATCGAAAAAA CGATGG TCTT CGATCG ATACAATAGCCTTGA TERM 531 432437 - 432451 + g 74 -5 -4.71791 | TACTCACATACTTAG CTATTC GCA GGATAG TTTGTTTGTTCATCT recU 433057 - 432461 - | recombination protein U TERM 532 433338 - 433317 - g 71 -9.5 -2.78463 | opp_overlap 433316 AGGTTGCTCAGGAGA TGAAAACCG AGTA CGGTTTCCA GTTGGCTACCATTTT SPH_0478 433124 - 433651 + | hypothetical protein SPH_0479 433721 - 434062 + | cell division initiation protein TERM 533 434478 - 434504 + F 100 -10.2 -5.0538 | AAATTGCATATAGGT TGGGGCTGAGAA ATT TTCTCAACCTCA TTTTTTAAAGTGGAC SPH_0480 434548 - 435705 + | methyltransferase TERM 534 435742 - 435731 - g 75 -5.8 -4.73613 | TTATGAGTAAGAAAA GACG AAAT CGTC ATAAAAAAGAAGGTC SPH_0481 435718 - 437130 + | hypothetical protein gnd 437206 - 438630 + | 6-phosphogluconate dehydrogenase, decarboxylating TERM 535 439326 - 439297 - g 70 -5.8 -4.37534 | gap 1 AAAGCTACATTAAAA CTGTGCGTGGTGT TGGTT ACACCATGCA-AG AATAGAAAAGCAGTT SPH_0483 438642 - 439331 + | response regulator TERM 536 439357 - 439336 - f 83 -7.3 -4.79752 | opp_overlap 439336, overlap 439331 TGCAAGAATAGAAAA GCAGTTGCA GTTG TGTAACTGC TTTTTTGAGGAGTTT TERM 537 439336 - 439357 + F 100 -9.5 -5.03747 | opp_overlap 439336 439331 TGCAAGAATAGAAAA GCAGTTGCA GTTG TGTAACTGC TTTTTTGAGGAGTTT SPH_0484 439430 - 440449 + | choline-binding protein F TERM 538 440539 - 440559 + T 90 -8.3 -4.9445 | opp_overlap 440539 TTGGGGAGATTAAAA GCATGTGAA ATC TACACATGC TTTTTCGTTAGTTAT TERM 539 440559 - 440539 - T 83 -8.3 -4.34402 | opp_overlap 440539 TTGGGGAGATTAAAA GCATGTGAA ATC TACACATGC TTTTTCGTTAGTTAT SPH_0485 441799 - 440567 - | transporter, major facilitator family protein TERM 540 441681 - 441667 - G 70 -5.7 -4.39386 | opp_overlap 441666 TGGAAATCAGTAAAA TCGCT AGCGG AGCGA AATTGTACTGAGCCA SPH_0487 443536 - 443658 + | choline-binding protein F TERM 541 443690 - 443667 - f 71 -6.8 -4.15577 | opp_overlap 443667 TCAATAATGAAAGAA GCGATTGT GAATGGAA ACAATCGC TTTTTTTGTGAAAAT TERM 542 443667 - 443690 + F 89 -6.8 -5.61596 | opp_overlap 443667 TCAATAATGAAAGAA GCGATTGT GAATGGAA ACAATCGC TTTTTTTGTGAAAAT TERM 543 444347 - 444334 - g 77 -8.1 -4.17316 | opp_overlap 444335, overlap 444335 AGTGGTTCAAAATAA GGGCA AGGA TGCCC TACCGTTTTTGCATG mvk 443780 - 444658 + | mevalonate kinase TERM 544 444728 - 444740 + G 70 -7.7 -3.64364 | overlap 444732 AAAAAGAGATGGTGC CTGCT ACT AGCAG TATTTCTCTAACTTT mvaD 444640 - 445593 + | diphosphomevalonate decarboxylase SPH_0490 445580 - 446587 + | phosphomevalonate kinase TERM 545 446718 - 446734 + G 71 -3.7 -4.99035 | opp_overlap 446696, overlap 446719 ACAGAGTTTGCTGGT CGAAAGT GGG ACTTTCC TTTTTATATCAATGC fni 446571 - 447581 + | isopentenyl-diphosphate delta-isomerase, type 2 TERM 546 447575 - 447589 + F 77 -4.9 -5.1101 | opp_overlap 447575 GGATCAGATGAAAAA GGCGT AACCA GCGCC TTTTTTCCATCCTCA TERM 547 447589 - 447575 - f 70 -4.2 -4.82667 | opp_overlap 447575 GGATCAGATGAAAAA GGCG TAACCAG CGCC TTTTTTCCATCCTCA SPH_0492 447658 - 448356 + | hypothetical protein SPH_0493 448353 - 449348 + | histidine kinase SPH_0494 449362 - 449994 + | response regulator SPH_0498 450914 - 451153 + | hypothetical protein TERM 548 451561 - 451547 - f 79 -8.6 -3.77588 | ATTTGACAGGAATAA CTGTGA CTA TCACAG GCTATCCATCATATA TERM 549 451858 - 451844 - f 73 -4.3 -4.88795 | opp_overlap 451844 ATGGAAGAAAATAAA TGGTA GTTGG TACCA TTATAGACAACATGA SPH_0501 452082 - 453104 + | choline binding protein F TERM 550 453243 - 453275 + T 70 -4.2 -4.69549 | ATTAATTTATCCGAA GGATTTAGTTCTGT ATTGC ACAAGGCTAAGTCC TTTTAGTTTTACCTT SPH_0502 454067 - 453234 - | integrase core subunit TERM 551 454511 - 454557 + H 89 -11.8 -3.26471 | opp_overlap 454514, overlap 454514 454516 454551 TTAATTTCATAATAA AAACACCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGGTGTAG TTCATGTACACCTGA TERM 552 454554 - 454514 - H 100 -17.2 -5.19328 | opp_overlap 454514 454511 454516 454551 ATTTCATAATAAAAA CACCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTGGGGTG TAGTTCATGTACACC TERM 553 454514 - 454554 + H 100 -17.9 -2.81547 | opp_overlap 454514, overlap 454511 454516 454551 ATTTCATAATAAAAA CACCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGGTG TAGTTCATGTACACC TERM 554 454516 - 454552 + H 95 -14.7 -2.95521 | opp_overlap 454514, overlap 454514 454511 454551 TTCATAATAAAAACA CCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGG TGTAGTTCATGTACA TERM 555 454627 - 454653 + H 81 -8.1 -4.20136 | opp_overlap 454627 454626 454623 454622, overlap 454622 454613 CTCGTCAAAAGTAAT GTTTTGACACA AAATC TGTGACAAAAC TTTAGTTTTAAAGGT SPH_0504 454714 - 456483 + | pts system mannitol-specific eiicb component (eiicb-mtl) (eii-mtl) TERM 556 456570 - 456537 - g 72 -9.7 -3.05496 | opp_overlap 456543, overlap 456534 456542 CGAGAAGAACAATTA TTGAAGGCTTTCCTA CATG TAGGGAAGCTTTCAA TGCAAGATATGACTG TERM 557 456543 - 456564 + G 79 -9.5 -3.6502 | opp_overlap 456542 456537 456534 GAACAATTATTGAAG GCTTTCCTA CATG TAGGGAAGC TTTCAATGCAAGATA SPH_0505 456507 - 458462 + | putative transcriptional regulator MtlR SPH_0506 458464 - 458901 + | mannitol-specific phosphotransferase enzyme IIA component SPH_0507 458963 - 460099 + | mannitol-1-phosphate 5-dehydrogenase TERM 558 460373 - 460383 + F 74 -5.4 -4.75404 | TTATTGGATTTTCTC CTCA GAT TGAG TTTTTGATCAGCTTT SPH_0508 460443 - 460556 + | hypothetical protein tig 460860 - 462143 + | trigger factor TERM 559 462147 - 462193 + T 85 -9 -4.09243 | gap 1, opp_overlap 462154 462161, overlap 462153 462156 462161 ACAGTAAAATAATCT TAATA-AACAGAAAACCCACC TGAATT GGTGGGTTTTCTGATGTACTA TTTTCCAAAAATCTC TERM 560 462153 - 462186 + T 93 -14 -3.01785 | opp_overlap 462154 462161, overlap 462147 462156 462161 AAATAATCTTAATAA ACAGAAAACCCACC TGAATT GGTGGGTTTTCTGA TGTACTATTTTCCAA TERM 561 462185 - 462154 - T 100 -17.5 -4.22591 | opp_overlap 462153 462147 462156 462161, overlap 462161 AATAATCTTAATAAA CAGAAAACCCACC TGAATT GGTGGGTTTTCTG ATGTACTATTTTCCA TERM 562 462156 - 462183 + T 93 -14.3 -2.72761 | opp_overlap 462154 462161, overlap 462153 462147 462161 TAATCTTAATAAACA GAAAACCCACC TGAATT GGTGGGTTTTC TGATGTACTATTTTC TERM 563 462161 - 462178 + T 84 -8.4 -4.52047 | opp_overlap 462154 462161, overlap 462156 462153 462147 TTAATAAACAGAAAA CCCACC TGAATT GGTGGG TTTTCTGATGTACTA TERM 564 462178 - 462161 - T 90 -8.4 -4.89838 | opp_overlap 462161 462156 462153 462147, overlap 462154 TTAATAAACAGAAAA CCCACC TGAATT GGTGGG TTTTCTGATGTACTA SPH_0510 464557 - 462191 - | RecD/TraA family helicase TERM 565 464781 - 464754 - R 79 -8.4 -3.9093 | opp_overlap 464754 CTCACGATAGAAGAA GAGGCTGAGATT GGTG ATTCTCGGCCTC TTAGGTTTCTTAAAA TERM 566 464754 - 464781 + r 85 -10.6 -3.37761 | opp_overlap 464754 CTCACGATAGAAGAA GAGGCTGAGATT GGTG ATTCTCGGCCTC TTAGGTTTCTTAAAA lepB 465405 - 464791 - | signal peptidase I TERM 567 465024 - 465057 + g 88 -11.1 -4.02022 | AAGTTCCTTTATTTC CTTCAAAGCCCTTGC CTGA GTAAGTGCTTTGGAG TTTGTCATCCTTGAA rnhC 466289 - 465417 - | ribonuclease HIII SPH_0513 466376 - 466678 + | hypothetical protein cvpA 466675 - 467223 + | CvpA family protein TERM 568 467247 - 467227 - f 88 -7.6 -4.87786 | gap 1, opp_overlap 467227 TTAATCGGATAAAAA GGGC-AGGA GTTT TCCTAGCCC TTTGTTTACAGATTT TERM 569 467227 - 467247 + F 81 -7.6 -4.4448 | gap 1, opp_overlap 467227 TTAATCGGATAAAAA GGGC-AGGA GTTT TCCTAGCCC TTTGTTTACAGATTT TERM 570 467553 - 467538 - g 73 -7.6 -4.00348 | TCTCAACTAAGGAAA TTGCAG GAGT CTGCAA GAGGTTGGAGATGGG SPH_0515 467327 - 469663 + | MutS2 family protein TERM 571 469952 - 469976 + F 100 -10.1 -4.68655 | opp_overlap 469957 TATCTAAGCATTCCA GAGTACATGTA TCT TGCATGTGCTC TTTCTTTTGGGGTTG TERM 572 470381 - 470352 - g 95 -12.9 -3.72576 | CTCTTGGCCATCAAA TACCGCACCAAGG ACGA CCATGGTGCAGTA GCGGGAGGTCCCATG TERM 573 470436 - 470426 - g 76 -6.8 -4.40358 | opp_overlap 470426 470429 AGGGATGGGAGAAAA GTGG CGA CCAC TTGCTGTTTTGTTTG TERM 574 471161 - 471171 + G 70 -3.2 -4.93296 | TCGCTTTATCTGGCT CTAC CGT GTGG TTTTTGTGCTCATGG SPH_0516 470010 - 471332 + | D-alanine glycine permease TERM 575 471338 - 471354 + F 87 -6.6 -5.50499 | opp_overlap 471338 TGACAAATAATGGAA TCACAC AGCTC GTGTGA TTTTTTTGCCTATAA TERM 576 471772 - 471758 - g 79 -10 -3.55622 | opp_overlap 471764 GTGAAGTGGTGCAAA TCACGG CAG CCGTGA CCAATGGTTGTGCCT SPH_0517 471550 - 472098 + | macrophage infectivity potentiator protein TERM 577 472116 - 472140 + F 82 -4.3 -5.48825 | opp_overlap 472117, overlap 472117 CATATCTGAGTAAAA TGAAGTCTG AAATAAG CGGACTTCG TTTTTTTAAATCCTC SPH_0518 472208 - 473107 + | exfoliative toxin A TERM 578 473098 - 473127 + T 87 -6.5 -5.42265 | opp_overlap 473101, overlap 473101 GATTTGGTTACGAAA AAAGGTCTAGCTA GAAA TAGCTAAACCTTA TTTTTTATGGTTTGA TERM 579 473124 - 473101 - T 100 -10.4 -5.14563 | opp_overlap 473098 473101 TTGGTTACGAAAAAA GGTCTAGCTA GAAA TAGCTAAACC TTATTTTTTATGGTT TERM 580 473101 - 473124 + T 86 -8.2 -4.75967 | opp_overlap 473101, overlap 473098 TTGGTTACGAAAAAA GGTCTAGCTA GAAA TAGCTAAACC TTATTTTTTATGGTT serS 474406 - 473132 - | seryl-tRNA synthetase SPH_0520 474991 - 474620 - | ManO SPH_0521 476358 - 474994 - | aspartate kinase TERM 581 476461 - 476483 + rH 100 -9.2 -5.59655 | AGCGAGCTTTTCTTA TCGGCTGAGA CAC TTTCAGTCGA TTTTTTCTTGCTTTC SPH_0522 476691 - 476536 - | hypothetical protein SPH_0523 476683 - 477468 + | enoyl-CoA hydratase SPH_0524 477562 - 477996 + | transcriptional regulator SPH_0525 477996 - 478970 + | beta-ketoacyl-acyl carrier protein synthase III SPH_0526 479030 - 479254 + | hypothetical protein TERM 582 479293 - 479272 - f 72 -8 -3.47709 | opp_overlap 479269 479272 AGAATATTAGTAGAA GGAGTAGG GAGAAA CCCACTCC CTCTTGTTTAGGTAA SPH_0527 479373 - 480347 + | putative enoyl-(acyl-carrier-protein) reductase II fabD 480340 - 481260 + | malonyl CoA-acyl carrier protein transacylase fabG 481294 - 482025 + | 3-oxoacyl-(acyl-carrier-protein) reductase SPH_0531 482047 - 483282 + | 3-oxoacyl-[acyl-carrier-protein] synthase 2 accB 483285 - 483770 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein fabZ 483767 - 484189 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ accC 484201 - 485568 + | acetyl-CoA carboxylase, biotin carboxylase TERM 583 485689 - 485671 - g 79 -6.6 -4.65895 | TCGGTTAGGGAAAAA CCTCAAGC TAA GCCAGAGG TTCCAGATGAATTAT TERM 584 485867 - 485881 + G 73 -10 -2.82595 | opp_overlap 485867, overlap 485866 TTACAGGGATTGAAA GCAAGG ATC CCTTGC ATTTCCCTGGTTACC TERM 585 485881 - 485867 - g 80 -10 -3.67792 | opp_overlap 485866 485867 TTACAGGGATTGAAA GCAAGG ATC CCTTGC ATTTCCCTGGTTACC accD 485605 - 486471 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit TERM 586 487163 - 487152 - g 73 -5.8 -4.62085 | AGTGTCAAAAAAGAA CTCC AAAC GGAG CTGGCTAGACTTTCA accA 486468 - 487235 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 587 487247 - 487265 + F 82 -5.3 -5.24129 | opp_overlap 487247 CTAAGAATGACTAAA TGAGACT AGAAA GGTCTCA TTTTTTATGGAAAAA SPH_0537 487498 - 487683 + | hypothetical protein TERM 588 487907 - 487889 - g 76 -4.6 -5.0538 | opp_overlap 487889, overlap 487897 487898 TTGGAGGTTAAAAAA GAAAAAGA TGC TCTTTATC TTTGAGAAAAAGAGC TERM 589 487923 - 487897 - g 79 -6.6 -4.48934 | opp_overlap 487889, overlap 487889 487898 TAAAAAAGAAAAAGA TGCTCTTTATCT TTG AGAAAAAGAGCT GGAACTGGTCATTTG TERM 590 487922 - 487898 - g 75 -10.1 -3.257 | opp_overlap 487889, overlap 487889 487897 AAAAAAGAAAAAGAT GCTCTTTATCT TTG AGAAAAAGAGC TGGAACTGGTCATTT TERM 591 488143 - 488165 + G 70 -7.8 -3.68351 | opp_overlap 488134, overlap 488146 AGGAGACTCTTGATA GAGGGTATTT TAT GAATACCTTC TTTCCCTAGTCCAAG SPH_0538 487740 - 488174 + | hypothetical protein TERM 592 488250 - 488281 + T 71 -3.1 -5.05153 | CTATCTCACAGAGAT CCAATTAGTTTAT TATATT ATAGTCTGATTGG TTTCTTTTTTGCCCT TERM 593 488429 - 488474 + T 100 -11.5 -4.10144 | opp_overlap 488441, overlap 488441 TTTTAGATAGTGGGA GGCAAAGAAAAAGTGTTTGAT ATCT ATCAAACACTTTTTCTTTTTA TTGTTCTTCTGTTAC TERM 594 488441 - 488462 + T 100 -10.3 -5.74684 | opp_overlap 488441, overlap 488429 GGAGGCAAAGAAAAA GTGTTTGAT ATCT ATCAAACAC TTTTTCTTTTTATTG TERM 595 488462 - 488441 - T 100 -10.3 -5.30616 | opp_overlap 488429 488441 GGAGGCAAAGAAAAA GTGTTTGAT ATCT ATCAAACAC TTTTTCTTTTTATTG nusB 488894 - 488472 - | transcription antitermination factor NusB SPH_0540 489276 - 488887 - | Gls24 family general stress protein efp 489858 - 489298 - | translation elongation factor P TERM 596 489983 - 489953 - R 75 -8.5 -3.48924 | gap 1, opp_overlap 489953 489955 489960, overlap 489960 GGAGTTGGTAGAGAA GAA-AAAACCAACC TTAG GGCTGGTTTTGTTC TGTCTAGTTTTCTTT TERM 597 489960 - 489975 + r 73 -4.6 -4.87592 | opp_overlap 489953 489960, overlap 489955 489953 GTAGAGAAGAAAAAA CCAACC TTAG GGCTGG TTTTGTTCTGTCTAG TERM 598 489975 - 489960 - R 89 -6.8 -5.60689 | opp_overlap 489960 489955 489953, overlap 489953 GTAGAGAAGAAAAAA CCAACC TTAG GGCTGG TTTTGTTCTGTCTAG SPH_0542 491429 - 489987 - | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) SPH_0543 492895 - 491429 - | glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-adtsubunit A) TERM 599 491472 - 491500 + g 70 -8.9 -3.2115 | opp_overlap 491490, overlap 491473 TGTTGTTTGTGGTAG TCTGTTGTTGCTT CAA AAGCAGCAGCAGC TTGGTAAATGGTTTC TERM 600 491473 - 491499 + g 83 -12.4 -2.52208 | opp_overlap 491490, overlap 491472 GTTGTTTGTGGTAGT CTGTTGTTGCTT CAA AAGCAGCAGCAG CTTGGTAAATGGTTT gatC 493197 - 492895 - | glutamyl-tRNA(Gln) amidotransferase, C subunit prfC 493410 - 494954 + | peptide chain release factor 3 TERM 601 494986 - 494969 - f 79 -8.5 -3.75292 | opp_overlap 494968 494951 494969 ACTCAGTACCAACAA TTGGAAC TAAA GTTCCAA ATTGTTGGACGCTAG rpmB 495821 - 496009 + | ribosomal protein L28 TERM 602 496026 - 496037 + F 93 -5.8 -5.92399 | opp_overlap 496019 496013 496026, overlap 496013 AATAAAAGCAAAGGA GACC TTAG GGTC TTTTTTCTTTTATTG SPH_0549 496166 - 496531 + | alkaline shock protein TERM 603 497283 - 497312 + G 76 -7.3 -4.1899 | gap 1 TGAAATCATGGTAGC TCTTAAGCA-AGGT CCA ACCTATGCTAAAGA TTTTGACTACGATGA SPH_0550 496534 - 498201 + | dihydroxyacetone kinase family protein TERM 604 498212 - 498229 + F 100 -6.3 -6.04324 | opp_overlap 498212 498215 AATAAGATTAATGAA GGACTGA GAAA TCAGTTC TTTTTTCTTTTTTAG TERM 605 498302 - 498281 - f 82 -3.1 -5.74684 | TAATAAAAACAAAAA TAACATTCA TAAA TAAACGTTA AAATAGAAAATTCAG ilvB 498402 - 500102 + | acetolactate synthase, large subunit, biosynthetic type ilvN 500095 - 500571 + | acetolactate synthase, small subunit ilvC 500637 - 501659 + | ketol-acid reductoisomerase SPH_0554 501766 - 502002 + | hypothetical protein SPH_0555 502240 - 502596 + | hypothetical protein TERM 606 502628 - 502597 - f 87 -10.4 -3.7732 | opp_overlap 502605, overlap 502598 502605 TTCGGAGATGAATAA CTAAAAAACAGTCA TTAG TGACTGTTTTTTAT AGAAAAAGAGGTTTT TERM 607 502627 - 502598 - f 89 -13.9 -2.86071 | opp_overlap 502605, overlap 502597 502605 TCGGAGATGAATAAC TAAAAAACAGTCA TTAG TGACTGTTTTTTA TAGAAAAAGAGGTTT TERM 608 502620 - 502605 - f 89 -7.6 -5.37865 | opp_overlap 502605, overlap 502598 502597 TGAATAACTAAAAAA CAGTCA TTAG TGACTG TTTTTTATAGAAAAA TERM 609 502605 - 502620 + F 89 -7.6 -5.24129 | opp_overlap 502605 502598 502597 TGAATAACTAAAAAA CAGTCA TTAG TGACTG TTTTTTATAGAAAAA ilvA 502646 - 503896 + | threonine dehydratase SPH_0557 504038 - 504226 + | hypothetical protein TERM 610 504642 - 504628 - f 78 -7.2 -4.27617 | opp_overlap 504628 504627 TAGAGGCTAGCAAAA CCTATA TAT TATAGG ATTTAAAAAGGAAGT TERM 611 504928 - 504913 - g 78 -2.6 -5.46698 | overlap 504915 TGCAAAAGTAAAAAA TATTTC ATTT GAAACA GCCCTAGGCCTAATT SPH_0558 504767 - 504982 + | hypothetical protein TERM 612 505082 - 505062 - T 74 -5.4 -4.82667 | opp_overlap 505064 505070 TGAGGACAGCAAAAA GACTGCAC GGTTG ATGCAGCC TTTTCTTTTTATTTG TERM 613 505070 - 505082 + T 84 -5.5 -5.48028 | opp_overlap 505062, overlap 505064 GCAAAAAGACTGCAC GGTTG ATG CAGCC TTTTCTTTTTATTTG SPH_0559 505831 - 505091 - | L-cystine import ATP-binding protein TcyN SPH_0560 507396 - 505831 - | amino acid ABC transporter, amino acid-binding protein/permease protein TERM 614 506395 - 506406 + g 73 -5.8 -4.64861 | GACTAGTTTTTGAAG GCCA TAAA TGGC TTTGTTTTCAGAGAG TERM 615 508816 - 508831 + G 72 -9 -3.31558 | opp_overlap 508806 GAAAGCGAGTTGTCT TCTGGG GACT CCCAGA TTACTATCGTCCTTT TERM 616 508968 - 508978 + G 70 -5.4 -4.43189 | CTTTACCTCCCCTTG CCAA TAC TTGG TTTTCTAGGGTTAGT SPH_0562 507534 - 509423 + | hypothetical protein SPH_0561 509590 - 509420 - | hypothetical protein SPH_0565 511007 - 511852 + | undecaprenyl-diphosphatase TERM 617 511854 - 511887 + G 81 -11.9 -2.74192 | opp_overlap 511859, overlap 511859 GTTTATTTGTATAAG AAAAACCTTGAAGGG GCAA CTCTTCAAGGTTTTA TACTCTTAGAAAATC TERM 618 511882 - 511859 - g 100 -9.6 -5.18726 | opp_overlap 511854 511859 TTTGTATAAGAAAAA CCTTGAAGGG GCAA CTCTTCAAGG TTTTATACTCTTAGA TERM 619 511859 - 511882 + G 95 -11.8 -4.55023 | opp_overlap 511859, overlap 511854 TTTGTATAAGAAAAA CCTTGAAGGG GCAA CTCTTCAAGG TTTTATACTCTTAGA SPH_0566 511845 - 511973 + | hypothetical protein SPH_0567 513060 - 511999 - | DNA polymerase IV (Pol IV) TERM 620 512208 - 512238 + g 83 -4.9 -5.27399 | GTTGATGTAGATTGA GAGC-GACTTTTTCT GAT AGAAGA-GTCAGCTC TTTTTTGATATCTTC TERM 621 512671 - 512682 + g 72 -4.4 -4.83243 | AATTTTGACCGCTGA CTTG ATAC CAAG TTTATTTTCTGTCAC TERM 622 512999 - 513020 + g 74 -3.7 -5.06816 | opp_overlap 512999 513000 513002, overlap 513000 513018 ACTGCAGCAAAAAAG GCATCCATG TCAA TATGGATGA TTTTTCTTGACAAAT SPH_0568 513226 - 513095 - | hypothetical protein TERM 623 513138 - 513156 + g 75 -9.6 -3.35597 | overlap 513121 513117 513141 TCAAAACAGTGTTTT GAGCTGAC TTC GTCAGTTC TATTTACAACCTCAA TERM 624 513141 - 513153 + g 73 -7.7 -3.81755 | overlap 513117 513138 AAACAGTGTTTTGAG CTGAC TTC GTCAG TTCTATTTACAACCT TERM 625 513186 - 513166 - G 70 -8.3 -3.35996 | opp_overlap 513185, overlap 513167 513173 CAGTTCTATTTACAA CCTCAAAGC AGT GCTTTGAGC AGCCTGCGGCTAGCT TERM 626 513185 - 513167 - G 81 -11.8 -2.61383 | overlap 513166 513173 AGTTCTATTTACAAC CTCAAAGC AGT GCTTTGAG CAGCCTGCGGCTAGC TERM 627 515319 - 515305 - g 74 -6.4 -4.44046 | CTTACTCTAAACAAA CTGGTA ACT CACCAG TTCACAAAGGTGTAT pflB 513453 - 515777 + | formate acetyltransferase TERM 628 515845 - 515867 + T 100 -13.6 -5.27779 | opp_overlap 515849 AAAAGCTAAGCTCGA GAAAGGACAA ATT TTGTCCTTTC TTTTTTGATGTTCAG TERM 629 515863 - 515849 - T 79 -8.6 -3.89614 | opp_overlap 515845 GCTAAGCTCGAGAAA GGACAA ATT TTGTCC TTTCTTTTTTGATGT SPH_0570 517097 - 515835 - | transposase TERM 630 517218 - 517170 - R 100 -17 -4.70659 | opp_overlap 517148 517181 TTTGATACTCAAAAA GCCCTATAATCTCCACAGTGGG ATTTA CCCACTACAGAAATTATAGAGC CAGAAAAAACACTTT TERM 631 517265 - 517228 - R 85 -6.3 -5.29782 | opp_overlap 517228, overlap 517255 TAGAGCCAGAAAAAA CACTTTTGTTCACTAGC AGAA ACTAGAGAGCAGAAGTG TTTTTCTGTTCAGAT TERM 632 517228 - 517265 + r 100 -10 -5.09762 | opp_overlap 517228 517255 TAGAGCCAGAAAAAA CACTTTTGTTCACTAG CAGAAA CTAGAGAGCAGAAGTG TTTTTCTGTTCAGAT SPH_0571 518891 - 517362 - | transcriptional regulator, putative TERM 633 517936 - 517920 - G 82 -3.7 -5.41941 | overlap 517922 TAAACCAAACAAAAA CGTTCTT GTT AAGAAAG TCAGTGCTGTTAAAA TERM 634 519057 - 519077 + H 78 -2 -5.626 | overlap 519061 TGGAGTTTTATGGCT TATTTTTT TTATT AGAAAATA TTTTTTTATCAAATA TERM 635 521678 - 521660 - g 74 -6 -4.40963 | opp_overlap 521662, overlap 521657 521662 AGTCTTCAAAAACAA CATCCGGA TTA TCCAGATA TTTATGGAGCTATTG SPH_0572 519407 - 522058 + | cell wall surface anchor family protein TERM 636 522172 - 522135 - f 86 -10.8 -3.21704 | overlap 522153 CAAGAAGAGATTTAA GTTTACTTGGTGAAAA CAGTTT TCTTCGCCAAGTAAAC CACCATTGAAAGGGG TERM 637 523241 - 523219 - g 72 -8.6 -3.57119 | CAGACATTCCTGAAA GTAACGATAT TAC ATATCATTAC GGAAATCATCAAGAT TERM 638 523738 - 523725 - g 72 -4.5 -4.8048 | overlap 523710 523728 GCTGCAGATGAAAAA GCAGC AGCA ACTGC AAAACAAAAATTGGA SPH_0574 522291 - 524225 + | cell wall surface anchor family protein SPH_0573 524577 - 524191 - | hypothetical protein SPH_0575 524542 - 525453 + | cell wall surface anchor family protein TERM 639 525556 - 525608 + FH 75 -8 -3.86346 | gap 2, opp_overlap 525556 525566, overlap 525559 525568 525592 ATGTGGCATGAATCA CAATAACGGATA-TGAGGCTGG-GCA GAT TGTGCCAGCCTCATTGTGGGTTATTG TTTGTAAAACGATAG TERM 640 525568 - 525595 + FH 89 -11.4 -3.49425 | gap 1, opp_overlap 525566 525556, overlap 525559 525556 525592 TCACAATAACGGATA TGAGGCTGG-GCA GAT TGTGCCAGCCTCA TTGTGGGTTATTGTT TERM 641 525716 - 525696 - fH 73 -6.9 -4.05714 | opp_overlap 525696 525700 525701 525702, overlap 525705 ATGGTGAATCAGAAA GAAATGAGA TTT TCTCGTTTC TCTTAGCAGATAGGA TERM 642 525696 - 525716 + FH 74 -9.1 -3.03124 | opp_overlap 525696 525705, overlap 525700 525701 525702 ATGGTGAATCAGAAA GAAATGAGA TTT TCTCGTTTC TCTTAGCAGATAGGA SPH_0576 525791 - 526693 + | sortase family protein TERM 643 526746 - 526721 - g 85 -5.5 -5.35222 | opp_overlap 526721 AAAAGGCACAAAAAA GAAGAAACATC CGCT GATCCTTCTTC TGATTTTCTTAGTAG SPH_0577 526680 - 527573 + | sortase SPH_0578 527560 - 528411 + | sortase, putative TERM 644 528493 - 528515 + T 100 -9.2 -5.27779 | opp_overlap 528497 GTCAGCTAAGCTCGA GAAAGGACAA ATT TCGTCCTTTC TTTTTTGATGTTCAA TERM 645 529076 - 529090 + T 77 -8.6 -3.57263 | opp_overlap 529076 CATTCGGGAGTGAAA CAGTCT AGG AGACTG TTTCAGCCTGAGCCT TERM 646 529090 - 529076 - T 77 -8.6 -3.6502 | opp_overlap 529076 CATTCGGGAGTGAAA CAGTCT AGG AGACTG TTTCAGCCTGAGCCT TERM 647 529936 - 529882 - T 95 -9 -4.96848 | gap 2, overlap 529884 TTTTCTACACAAAAA TA-GGCTCCATAATATCCATAG-GGG ATTTA CCCACTACAAATATTATAGAGCCATA AAAGCATCAACATCT TERM 648 529933 - 529884 - T 100 -13.2 -4.11141 | gap 1, overlap 529882 TTCTACACAAAAATA GGCTCCATAATATCCATAG-GGG ATTTA CCCACTACAAATATTATAGAGCC ATAAAAGCATCAACA SPH_0582 530073 - 529924 - | hypothetical protein SPH_0583 530350 - 530066 - | hypothetical protein TERM 649 530145 - 530184 + g 70 -3.1 -5.00616 | overlap 530148 530148 GAAATCACATATTTA TGAG-TTGGAGTATGCTCT TGAA AG-GCATACTTCAAGCTAA TTTTTTGAAAACGGG SPH_0584 530742 - 530915 + | hypothetical protein TERM 650 531680 - 531704 + T 74 -6.4 -4.33487 | overlap 531677 TCAACATAGCGAGAA GGCGGTTTCC TATAT GGAAGTCGTC TTGTTTTCATATTGT SPH_0585 533007 - 531784 - | ROK family protein TERM 651 533102 - 533087 - H 91 -2.6 -6.04953 | overlap 533089 ATACAAAGAAAAAAA TATTGT AAAA ACAACA AAAAATATATTGACA TERM 652 533241 - 533229 - g 82 -7.7 -4.56597 | CCGTTTGGTGAAAAA GTTGG CAA CCAAC GGCATTTGAAAGCTA SPH_0586 533175 - 534497 + | lichenan permease IIC component SPH_0587 534499 - 536385 + | hypothetical protein SPH_0588 536553 - 536897 + | lactose-specific phosphotransferase enzyme IIA component lacG1 536907 - 538319 + | 6-phospho-beta-galactosidase SPH_0590 538389 - 540068 + | pts system lactose-specific eiicb component (eiicb-lac) (eii-lac) TERM 653 540184 - 540156 - T 76 -7.6 -3.9644 | gap 1, opp_overlap 540156 TTTTTAATATAAGAA TCCCTCTT-TCAC AATT GTAAAAAGAGGGA TTTTGTATTTTATCT TERM 654 540156 - 540184 + T 77 -5.4 -4.95843 | gap 1, opp_overlap 540156 TTTTTAATATAAGAA TCCCTC-TTTCAC AATT GTAAAAAGAGGGA TTTTGTATTTTATCT SPH_0591 541633 - 540194 - | Trk transporter membrane-spanning protein - K+ transport SPH_0592 542986 - 541637 - | Trk family potassium uptake protein TERM 655 542311 - 542323 + g 70 -7.7 -3.64609 | CGATGAGAAGGCTCT TCACG GCG CGTGA TTTAAAATAATTATG SPH_0593 543175 - 544023 + | hypothetical protein TERM 656 544194 - 544204 + G 71 -6.8 -3.99678 | TCTATTATTTTTGGA CCGA TTA TCGG TTTGCTTGTCGGGGT SPH_0594 544038 - 544586 + | protein YdcD TERM 657 544634 - 544652 + G 72 -10.4 -2.61383 | overlap 544633 GTTAGCCGCAGGTTG CTCAAAAC AGT GTTTTGAG ATTGTGGATAGAACT TERM 658 544679 - 544697 + G 72 -10.4 -2.61383 | opp_overlap 544678, overlap 544678 AACTGACGAAGTCAG CTCAAAAC ATG GTTTTGAG GTTGTAGATGAAACT TERM 659 544723 - 544711 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAACATGGTTT TERM 660 544724 - 544742 + G 72 -10.4 -2.61383 | opp_overlap 544723, overlap 544723 AACTGACGAAGTCAG CTCAAAAC ATG GTTTTGAG GTTGTAGATGAAACT TERM 661 544768 - 544756 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG TAACCATACCTACGG SPH_0595 544593 - 544895 + | chlorohydrolase SPH_0596 544997 - 546679 + | putative ABC transporter ATP-binding protein // TERM 662 546888 - 546898 + G 70 -5.4 -4.34345 | overlap 546878 TGCGACGGTATTTGC CGTT TTA AACG TTTTGATGGTCTATC SPH_0597 546664 - 547494 + | cobalt transport family protein SPH_0598 547687 - 548190 + | RNA methyltransferase TERM 663 548210 - 548227 + F 93 -7.7 -5.58179 | opp_overlap 548210 548205 548211, overlap 548211 TGAAAATGAACAAAA TGCTTGC GCTT GCAAGCG TTTTTTGTTATGATA TERM 664 548227 - 548210 - f 77 -5.5 -4.89562 | opp_overlap 548210 548211, overlap 548205 548211 TGAAAATGAACAAAA TGCTTGC GCTT GCAAGCG TTTTTTGTTATGATA TERM 665 548226 - 548211 - f 75 -9 -3.5211 | opp_overlap 548210 548211, overlap 548210 548205 GAAAATGAACAAAAT GCTTGC GCTT GCAAGC GTTTTTTGTTATGAT TERM 666 548211 - 548226 + F 82 -9 -3.9328 | opp_overlap 548211 548210 548205, overlap 548210 GAAAATGAACAAAAT GCTTGC GCTT GCAAGC GTTTTTTGTTATGAT SPH_0599 548643 - 549206 + | hypothetical protein TERM 667 549225 - 549238 + G 84 -8.1 -4.72729 | opp_overlap 549225 AACATTTTTAATGAA GGGCA GTTT TGCCC TTTTACTTTTCGTTA SPH_0600 549220 - 549846 + | PAP2 family protein SPH_0601 549873 - 550262 + | hypothetical protein SPH_0602 550267 - 550716 + | hypothetical protein rpoE 550844 - 551431 + | DNA-directed RNA polymerase, delta subunit TERM 668 551499 - 551523 + T 93 -7.1 -5.75538 | overlap 551496 551501 CTCTTTTAGAGGTCG GGGCTCCCTAG TTC TTAGGGAGCTA TTTTTGTTTTTTCAA TERM 669 551501 - 551521 + T 100 -11.9 -4.48934 | overlap 551496 551499 CTTTTAGAGGTCGGG GCTCCCTAG TTC TTAGGGAGC TATTTTTGTTTTTTC TERM 670 551534 - 551555 + T 74 -5.9 -4.4767 | overlap 551536 AGCTATTTTTGTTTT TTCAAGAAG TTAT CTTCTTGTA TTTTATACTCAATGA TERM 671 551536 - 551553 + T 79 -8.5 -3.84585 | overlap 551534 CTATTTTTGTTTTTT CAAGAAG TTAT CTTCTTG TATTTTATACTCAAT SPH_0604 551646 - 551521 - | hypothetical protein TERM 672 551608 - 551626 + g 72 -10.4 -2.61383 | overlap 551607 ACTAGCCGTAGGCTG CTCAAAAC ACT GTTTTGAG GTTGTAGATAAGACT TERM 673 552216 - 552200 - g 81 -2.9 -5.63517 | CTTTGAAAGAAAAAA TCAAGCG TGC CGCTCTA ACGACCGACTCTGAT pyrG 551821 - 553428 + | CTP synthase TERM 674 553440 - 553461 + T 100 -9.5 -5.00884 | opp_overlap 553440 TTAGCAAAATCAGAA CCTTTGAGA AAAA TCTCAGAGG TTTTTTGCACACGAT TERM 675 553631 - 553610 - T 71 -6.7 -4.24711 | opp_overlap 553610 TAAAATCTGAACAAA TTAATTCGG AAAG CCAAATTAA TTTCTAGCAAAGTTT TERM 676 553965 - 553929 - T 70 -4.5 -4.72272 | opp_overlap 553929 553930 553933 553936, overlap 553933 553936 CTTGCTTAGGAAAAA GTAAGAAGCCATCCA ATTATGA TGGATAGCTTCTTGG TTATTAGATTTGTTC TERM 677 553961 - 553933 - T 83 -9.7 -3.84901 | opp_overlap 553930 553929 553933 553936, overlap 553929 553936 CTTAGGAAAAAGTAA GAAGCCATCCA ATTATGA TGGATAGCTTC TTGGTTATTAGATTT TERM 678 553933 - 553961 + T 71 -7.5 -3.56576 | opp_overlap 553933 553929 553936, overlap 553930 553929 553936 CTTAGGAAAAAGTAA GAAGCCATCCA ATTATGA TGGATAGCTTC TTGGTTATTAGATTT SPH_0606 555600 - 553969 - | sodium-dependent phosphate transporter TERM 679 559566 - 559544 - g 76 -3.5 -5.28942 | TACCTCAAACAAAAA TTAGCAG AAGTTGAAG CTGCTAA GAACAAGGTGGTCTA SPH_0607 555893 - 560806 + | endo-beta-N-acetylglucosaminidase D TERM 680 561143 - 561103 - g 71 -7.6 -3.95051 | opp_overlap 561107 561118 GAAGAAGCTGATAAA GCTGGCAAATCACTTGCT CCTGT AGCAGCTGACTTGGCAGC AAAACTTGGTCAAGA pgk 560896 - 562092 + | phosphoglycerate kinase TERM 681 562113 - 562140 + F 81 -7.8 -4.42238 | opp_overlap 562113, overlap 562118 TATAAATAAATCAAA GAAGAGAGGGAT GAAA GTTCCTCTTTTC TTTTGCTTAAAATAA TERM 682 562118 - 562135 + F 76 -4.1 -5.18643 | opp_overlap 562113, overlap 562113 ATAAATCAAAGAAGA GAGGGAT GAAA GTTCCTC TTTTCTTTTGCTTAA SPH_0609 562228 - 562755 + | hypothetical protein TERM 683 562775 - 562753 - f 100 -7.2 -5.8096 | opp_overlap 562753 562756 GAGAAAAAAGAAAAA TAATGTTACA TTT TATAACATTA TCAATTGACGTTTGT SPH_0610 562832 - 563188 + | HTH-type transcriptional regulator GlnR glnA 563225 - 564571 + | glutamine synthetase, type I TERM 684 564646 - 564663 + T 83 -6.3 -4.85782 | opp_overlap 564646 CTATAACCCTTAAAA TAGCGAT TTCG GTCGCTA TTTATTTTTCGAAAA SPH_0612 564780 - 564661 - | hypothetical protein SPH_0613 565038 - 565175 + | hypothetical protein TERM 685 565227 - 565242 + F 95 -9 -5.04175 | ACCCCATTATCTATA GGCGTA TTTT TACGCC TTTTTATATACTTGA SPH_0614 565346 - 566626 + | type I site-specific deoxyribonuclease chain S SPH_0615 566683 - 567480 + | phage integrase family integrase/recombinase TERM 686 567513 - 567485 - Tf 100 -11.1 -5.055 | opp_overlap 567485 567488 TTAATTGGTAAAAAA TAACAGGTGGTCA AAC TGACTACCTGCTA TTTTTGTGATTATGG TERM 687 567485 - 567513 + TF 100 -11.1 -5.01535 | opp_overlap 567485, overlap 567488 TTAATTGGTAAAAAA TAACAGGTGGTCA AAC TGACTACCTGCTA TTTTTGTGATTATGG TERM 688 567488 - 567510 + TF 87 -12.8 -3.05709 | opp_overlap 567485, overlap 567485 ATTGGTAAAAAATAA CAGGTGGTCA AAC TGACTACCTG CTATTTTTGTGATTA SPH_0616 569612 - 568044 - | type I restriction-modification system, S subunit SPH_0617 567491 - 568096 + | type I restriction modification DNA specificity domain-containing protein SPH_0618 571075 - 569612 - | type I restriction enzyme EcoEI M protein (M.EcoEI) TERM 689 570693 - 570710 + g 84 -7 -4.84274 | opp_overlap 570667 ATAACATTGATGACT TGGCGT AACAAG ACGCCA TTTTTCATATAGTTG SPH_0619 573421 - 571088 - | type I restriction-modification system, R subunit SPH_0620 573799 - 573993 + | hypothetical protein SPH_0621 574100 - 574537 + | hypothetical protein TERM 690 574565 - 574591 + F 100 -12.5 -5.30575 | TCTTCAGATTGATTT TTAGCACTCTT GATAA AAGAGTGCTAA TTTTTTGAGTTTTTG TERM 691 574860 - 574848 - g 70 -3.4 -4.98255 | opp_overlap 574859 GCGGAACTAGAAAAA CAAG GGTTG CTTG AGAAGGCTCATACTT TERM 692 575252 - 575262 + G 73 -6.8 -4.28656 | TCAGGAACGTTTCCT CGGT CAC ACCG TTTTAGATATTCACT hrcA 574701 - 575735 + | heat-inducible transcription repressor HrcA grpE 575762 - 576286 + | co-chaperone GrpE TERM 693 576349 - 576335 - f 73 -8.6 -3.20858 | TAGGAGATTGACGAA GTGTTC GAT GAACAC AAGAAAATCTATCTT dnaK 576766 - 578589 + | chaperone protein DnaK TERM 694 579024 - 579046 + F 100 -9.9 -4.65895 | TAATTTACTTATTTG CAGAGGTTG CAACC CAGCCTCTG TTTTTCGATAAAAAG TERM 695 579431 - 579417 - g 70 -2.8 -5.02715 | opp_overlap 579418, overlap 579418 AGACGAAATCAAAAA GGCTTA TCG TAAGCT TTCCAAAAAATATCA TERM 696 580444 - 580470 + G 73 -8.8 -3.73224 | opp_overlap 580432 580444 AATCCAAAGAAAAAA GGCTTCTTTGAT CAT ATTAAAGATGCC TTTGATGGAGAATAA TERM 697 580470 - 580444 - g 100 -6.6 -5.67283 | opp_overlap 580444, overlap 580432 AATCCAAAGAAAAAA GGCTTCTTTGAT CAT ATTAAAGATGCC TTTGATGGAGAATAA dnaJ 579349 - 580485 + | chaperone protein DnaJ TERM 698 580574 - 580556 - T 78 -10.4 -2.61383 | overlap 580555 AGTCGTATCTACAAC CTCAAAAC AGT GTTTTGAG CAGCCCGTGGCTAGT TERM 699 580784 - 580809 + T 73 -9.1 -2.82529 | opp_overlap 580790, overlap 580790 ACTTGTTTACGTTTT AAAAAAGAGCC GGGG GGCTCTTTTTA CTTATCTTCAGTTCC TERM 700 580790 - 580803 + T 90 -8.1 -4.99056 | opp_overlap 580790, overlap 580784 TTACGTTTTAAAAAA GAGCC GGGG GGCTC TTTTTACTTATCTTC TERM 701 580803 - 580790 - T 90 -8.1 -5.02074 | opp_overlap 580790 580784 TTACGTTTTAAAAAA GAGCC GGGG GGCTC TTTTTACTTATCTTC SPH_0626 581094 - 580807 - | hypothetical protein SPH_0627 581514 - 581104 - | histidine triad domain-containing protein SPH_0628 581582 - 582313 + | ABC-type transporter ATP-binding protein EcsA TERM 702 582826 - 582845 + G 70 -5.8 -4.4572 | gap 1, opp_overlap 582825 582826 TCTCAAGAAAGCAAG CGTAAGCAA GTC TTGCTT-CG TTTCTTTGCCCTCTT TERM 703 583285 - 583273 - g 72 -3.4 -5.06816 | ACCTTCCAAGAAAAA CTAG CCCTT CTAG CCTTACTAGGAGCTG SPH_0629 582310 - 583359 + | ABC transporter, permease protein TERM 704 583384 - 583411 + T 82 -4.2 -5.5112 | gap 1, opp_overlap 583376 TACGACACTAAAAAA GAAGTTGAGTTCA GTT TGT-CTCAGCTTC TTTTTTGTTACTACA SPH_0630 583856 - 583527 - | BlpT protein, fusion SPH_0631 584132 - 584470 + | BlpS protein TERM 705 585138 - 585116 - g 70 -8.6 -3.31144 | opp_overlap 585120 585134, overlap 585120 GGTGCATTTGGATAA GAAAGAAAAA CTC CTTTTCTTTC CCAATGGTGGAAGTT SPH_0632 584475 - 585212 + | response regulator TERM 706 585574 - 585594 + G 75 -2.5 -5.2204 | overlap 585579 GGGCAAGGAATTGTA GATGGGGAT GGC AATCCTATC TTTTTATTGATTATG SPH_0633 585226 - 586566 + | histidine kinase TERM 707 586604 - 586574 - T 100 -11.3 -5.39755 | opp_overlap 586574 CAGAATGATAAAAAA CAAGACCGAGA GTTCTTGTT TCTCGGTCTTG TTTTTATAGCTGAAT TERM 708 586574 - 586604 + T 100 -12 -4.88067 | opp_overlap 586574 CAGAATGATAAAAAA CAAGACCGAGAG TTCTTGT TTCTCGGTCTTG TTTTTATAGCTGAAT SPH_0634 586763 - 586608 - | double glycine cleavage site bacteriolysin superfamily protein SPH_0635 588181 - 586820 - | BlpC ABC transporter SPH_0636 590345 - 588192 - | transport/processing ATP-binding protein ComA TERM 709 589228 - 589251 + g 80 -6 -4.69053 | opp_overlap 589228 AAATAATCTACAAAT TCGCTGTCTA TATT TTGATAGCGA TTTTCTTCACTCGTG SPH_0637 590627 - 590824 + | hypothetical protein SPH_0638 591291 - 591560 + | bacteriocin BlpJ SPH_0639 591629 - 591859 + | hypothetical protein SPH_0640 591862 - 591981 + | hypothetical protein TERM 710 591993 - 592027 + F 70 -4.4 -4.69048 | gap 1 CTAAAAAATAAATTT CTCCCCTGT-ATTTG CTAGCT TAATTTACAGGGGAG TTTCTTTAATTTTGT TERM 711 592118 - 592140 + F 76 -2.7 -5.54079 | overlap 592111 ATACAATATAAAGAG GAAAGTATG TTTTT CATGCTTGC TTTTTTAATTTTTAC SPH_0641 592278 - 592442 + | hypothetical protein TERM 712 592692 - 592704 + G 70 -3.3 -4.85822 | opp_overlap 592674 ATCAACTTATGTTTA TCGGC TTG GCAGA TTTTATGTTTGTCAT SPH_0642 592439 - 592825 + | hypothetical protein SPH_0643 592925 - 593308 + | hypothetical protein SPH_0644 593360 - 594049 + | immunity protein BlpY TERM 713 595039 - 595014 - g 81 -6.9 -4.82901 | CTTTGCTTATAAAAA GAGTCAAAACC TATG GGTTTCTACTC TAGTCCATATGCTTT SPH_0646 594475 - 595086 + | CAAX amino protease TERM 714 595122 - 595099 - f 74 -6.8 -4.45077 | opp_overlap 595099, overlap 595093 TAAAAATTATGAAAA GGTAAGCA GAAGACGG TGCTTACC TTTTTCAAGCTATAA TERM 715 595099 - 595122 + F 76 -6.8 -4.61231 | opp_overlap 595099 595093 TAAAAATTATGAAAA GGTAAGCA GAAGACGG TGCTTACC TTTTTCAAGCTATAA SPH_0647 595247 - 596041 + | phosphotransferase family protein trmB 596038 - 596673 + | tRNA (guanine-N(7)-)-methyltransferase TERM 716 596761 - 596784 + F 87 -11 -3.44146 | opp_overlap 596761 596760 596763 AAGAATATGAAAAGT GAGGCGGGGA AATA TCTTCGCCTC TTGCTTATGAGGAGG SPH_0649 596799 - 597278 + | hypothetical protein nusA 597322 - 598458 + | transcription termination factor NusA SPH_0651 598480 - 598773 + | hypothetical protein SPH_0652 598766 - 599065 + | ribosomal protein HS6-type TERM 717 599242 - 599220 - g 70 -9.8 -2.60032 | opp_overlap 599202, overlap 599219 599218 GTCGCTGCAAAAATT GCTGCCAGCT TTA AGCCTGCAGC TGCTCCGAAAGTAGA TERM 718 599361 - 599349 - g 73 -6.9 -4.29928 | opp_overlap 599349 AAGGAAGAGGCAAAA CCGGC TGA GCCAG TTGCTCCGAAAACAG TERM 719 599551 - 599564 + G 70 -8.1 -3.72695 | opp_overlap 599550 AAGGTCAAAGCAACC GCGAC AATC GTCGC TTTAATGACCAAGCT SPH_0653 599082 - 601874 + | translation initiation factor IF-2 TERM 720 601966 - 601995 + F 100 -15.9 -3.53012 | opp_overlap 601960 TCTCAAAAATCCCCT GTGATGGGACTGA TAAA TCAGTTCCATCAC TTTCACCACGGCGAA TERM 721 602076 - 602095 + F 100 -10 -4.41494 | opp_overlap 602076 602074 AAGAAGTTTAAAATA GCTAGGTC TGCT GGCCTAGC TTTTGGTTCAAAGTA TERM 722 602095 - 602076 - f 73 -7.8 -3.71291 | opp_overlap 602076, overlap 602074 AAGAAGTTTAAAATA GCTAGGTC TGCT GGCCTAGC TTTTGGTTCAAAGTA rbfA 602125 - 602475 + | ribosome-binding factor A TERM 723 602494 - 602480 - f 100 -11.4 -4.1648 | opp_overlap 602480 ATAAGAACTAAAGAA GAGGGG TTG CCCCTC TTTTTTGGTGGAGGA TERM 724 602480 - 602494 + F 100 -11.4 -5.14563 | opp_overlap 602480 ATAAGAACTAAAGAA GAGGGG TTG CCCCTC TTTTTTGGTGGAGGA SPH_0655 602754 - 603533 + | hypothetical protein SPH_0656 603535 - 603717 + | hypothetical protein SPH_0657 603714 - 603854 + | hypothetical protein TERM 725 603878 - 603899 + T 88 -5.9 -5.66338 | opp_overlap 603878 CCAAGTCGCAGAGAA CTAGCAG GAACTCCA CTGCTAG TTTTTTATTCTCTTT SPH_0658 604136 - 603984 - | hypothetical protein TERM 726 604050 - 604032 - G 72 -10.4 -2.61383 | opp_overlap 604031, overlap 604031 AGTTCTATCCACAAC CTCAAAAC GGT GTTTTGAG CTGACTTCGTCAGTT SPH_0659 604167 - 604400 + | hypothetical protein TERM 727 604420 - 604433 + G 74 -5.3 -4.68103 | opp_overlap 604413 AGATGAACGGATTCA TATCC TACG GGATA TTTTGTTAGAATTGC SPH_0660 604400 - 605734 + | hemerythrin HHE cation binding domain-containing protein SPH_0661 605744 - 605998 + | hypothetical protein TERM 728 606053 - 606070 + F 82 -4.1 -5.4505 | AATGTTTATGTTAAA TCCTTGT CAGA GCAGGGA TTTTTTATTGAAAGG SPH_0662 606094 - 606489 + | hypothetical protein TERM 729 606684 - 606668 - f 71 -7.9 -3.5913 | opp_overlap 606667 TTTAAAGACTAAAGA TGCGGGC TTG GCCCGAA ATTGGGTGGTACCGC TERM 730 606715 - 606738 + F 88 -7.4 -5.11836 | overlap 606716 GGATAAACACATTCG TCCCTGTCAT GTAG ATGGCAGGGC TTTTCTTTTACGTCT TERM 731 606716 - 606737 + F 89 -10.9 -3.65475 | overlap 606715 GATAAACACATTCGT CCCTGTCAT GTAG ATGGCAGGG CTTTTCTTTTACGTC TERM 732 606791 - 606817 + F 77 -3 -5.46706 | opp_overlap 606791, overlap 606794 AGCAATCTTTTAACA CAAGTAAACTAT ATT ATGGTTTTCCTG TTTTTATTTTAGGAT SPH_0663 606901 - 607350 + | hypothetical protein SPH_0664 607337 - 607897 + | acetyltransferase TERM 733 607949 - 607937 - g 84 -7.7 -4.78107 | overlap 607940 CAGCATCAGGAAAAA TGACC ATT GGTCA AGAATTATCTCGACT TERM 734 608172 - 608203 + G 72 -3.2 -5.13741 | gap 1, opp_overlap 608164 608163, overlap 608164 TTTAAAGCAAATTCA GAATTTGTTGGATGA TTA TCATC-AAGAGATTC TTTTTGTTGAGTTGG SPH_0665 607897 - 608475 + | shikimate kinase TERM 735 609253 - 609230 - g 85 -9 -4.183 | gap 1 CCAATCGCTAATAAA CTCATC-CCAA TCG TTGGAGATGAG CACGCAGATCCTGAG valS 608468 - 611119 + | valyl-tRNA synthetase TERM 736 611148 - 611129 - f 83 -7.8 -4.652 | opp_overlap 611129 AAATGATGTTAAAAA CCTAACCC TATC GGGTTGGG TTTTACATTTGATAA TERM 737 611129 - 611148 + F 100 -10 -4.37711 | opp_overlap 611129 AAATGATGTTAAAAA CCTAACCC TATC GGGTTGGG TTTTACATTTGATAA SPH_0667 611200 - 611364 + | hypothetical protein SPH_0668 611415 - 612323 + | hypothetical protein SPH_0669 612347 - 613018 + | hypothetical protein TERM 738 613967 - 613979 + G 70 -3.3 -4.89009 | CGAAGGAAACACTCG GACAG TAA CGGTC TTTTTGATTCAGTAT SPH_0670 613398 - 614201 + | Fic family protein TERM 739 614443 - 614479 + F 79 -5.3 -5.14985 | gap 1, opp_overlap 614443 614445 TATTCTTGTTATAAT CAGCCTATAGGAATCA AGGAGG TGACTCTTAT-GGCTG TTTTTGTGTCTTTGG TERM 740 616845 - 616829 - f 70 -7.3 -3.87641 | AAGATGTTTCAGAAA CGACAAG TAG CTTATCG AAAGATGGATTATCG TERM 741 617480 - 617533 + F 100 -9.9 -5.07652 | gap 1, overlap 617529 617530 TAATACAAGTGAGCA GGAACCTATTTAATCACATC-GGAAG AAG TTTCTTGATGTTTTTAAGTAGGTTCC TTTTATTTTAAAAGG SPH_0674 617557 - 618396 + | transcription antiterminator LicT TERM 742 619554 - 619542 - g 81 -2.6 -5.63645 | TTAAAATATAAAAAA CCGC TTTAT GCAG CTATGATTGGTGGTG SPH_0675 618414 - 620252 + | phosphotransferase system sugar-specific EII component SPH_0677 620265 - 621680 + | beta-glucosidase TERM 743 621739 - 621777 + F 89 -8.5 -4.37658 | opp_overlap 621732 621739 621743, overlap 621743 TCATTAAATATGGAA TAAAGAAGTTTGGAA GACATTAAA TTCTAAACTTCTTTA TTTTATAGGGGGATT TERM 744 621743 - 621773 + F 72 -4.9 -4.77173 | opp_overlap 621743 621739 621732, overlap 621739 TAAATATGGAATAAA GAAGTTTGGAA GACATTAAA TTCTAAACTTC TTTATTTTATAGGGG TERM 745 622196 - 622234 + F 82 -5.3 -5.38839 | gap 1, overlap 622209 TGAAAACGGATGGTA CCGCGTGTCA-ACGCTCC GAGT GGAGTTTTTGGCATGTGG TTTTCTTTTTATCTA TERM 746 622209 - 622220 + F 77 -5.8 -4.65168 | overlap 622196 TACCGCGTGTCAACG CTCC GAGT GGAG TTTTTGGCATGTGGT TERM 747 622316 - 622298 - g 79 -6.7 -4.61824 | GAAGAACAATTAAAA GCGCTTC GCGAA GAAACGC TGACTAGCTTGAAGC TERM 748 622653 - 622623 - g 73 -7.6 -4.03413 | opp_overlap 622617 ACGTTTTGACACAAA CCAGTGAAGAAATC GAA GATATCTTCATCGG TATGGGTTATCAAGT pheS 622271 - 623317 + | phenylalanyl-tRNA synthetase, alpha subunit SPH_0679 623317 - 623826 + | acetyltransferase TERM 749 626281 - 626265 - g 79 -5.1 -5.1287 | overlap 626267 GCTATATGGAAAAAA TCCAAGC ATC GCTCGAA GAAAAAGTGAATGCA pheT 623903 - 626308 + | phenylalanyl-tRNA synthetase, beta subunit TERM 750 626360 - 626327 - T 71 -6.7 -4.10566 | opp_overlap 626328 626330, overlap 626328 ATAGTAGGATACAAA TTCCCCCTCTAGTTT ATGA ACACTAGAGGGGTGA TTTTATATAAAATAA TERM 751 626360 - 626328 - T 77 -10 -3.05616 | gap 1, opp_overlap 626328 626330, overlap 626327 TAGTAGGATACAAAT TC-CCCCTCTAGTTT ATGA ACACTAGAGGGGTGA TTTTATATAAAATAA TERM 752 626328 - 626360 + T 100 -10 -4.54047 | gap 1, opp_overlap 626327 626328, overlap 626330 TAGTAGGATACAAAT TC-CCCCTCTAGTTT ATGA ACACTAGAGGGGTGA TTTTATATAAAATAA TERM 753 626330 - 626357 + T 91 -12.8 -3.22094 | opp_overlap 626327 626328, overlap 626328 GTAGGATACAAATTC CCCCTCTAGTTT ATGA ACACTAGAGGGG TGATTTTATATAAAA SPH_0681 627377 - 626376 - | endonuclease/exonuclease/phosphatase family protein TERM 754 627211 - 627201 - G 90 -4 -5.92337 | AGATAGGAAAAAAAA TAAG AAA CTTA AAATAGCAGCCATAG SPH_0682 627534 - 628028 + | transposase SPH_0683 628107 - 628373 + | helix-turn-helix domain-containing protein TERM 755 628486 - 628509 + F 74 -2.4 -5.54907 | ACAAGTTATAAAAGG GATTTGAGAC GTTT GCTTCAAGTC TTTTTCTTTTGTCCG TERM 756 628962 - 628945 - g 74 -4.7 -4.88736 | overlap 628947 TACCAGGGAGAAAAA GGGGACG TTCG CGCCCTC CCAATGAAGAAATGG metE 628633 - 630882 + | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase TERM 757 631758 - 631746 - g 70 -7.7 -3.76482 | CTATACGATGAATAA TGCTG ATA CAGCA AAATACATCCATCAA metF 630946 - 631812 + | 5,10-methylenetetrahydrofolate reductase TERM 758 631823 - 631848 + F 87 -10.5 -3.85504 | opp_overlap 631823 631818, overlap 631842 GATAATAAAAGCAAA CCATTCTTCTC AGGT GAGGGGAATGG TTCCTTTTTAATGGT TERM 759 631848 - 631823 - f 72 -6.1 -4.35361 | opp_overlap 631823 631842, overlap 631818 GATAATAAAAGCAAA CCATTCTTCTC AGGT GAGGGGAATGG TTCCTTTTTAATGGT TERM 760 631842 - 631852 + F 74 -5.4 -4.77036 | opp_overlap 631823 631818, overlap 631823 TCTTCTCAGGTGAGG GGAA TGG TTCC TTTTTAATGGTAAAG TERM 761 632018 - 632056 + F 73 -7.6 -3.74626 | gap 1, opp_overlap 632018, overlap 632009 GAGAGAGTTAGTAAA GCATTTA-GCTAATCGC CCGATA GCGATTAGCGTGAAAGC TTTAGATACTTTAGT TERM 762 632320 - 632305 - f 71 -9 -3.01726 | overlap 632304 TTTTTCTACAGAAAT GTTCGG CAAG CCGAAC CGTCCAAAATATCTT TERM 763 632385 - 632399 + F 73 -8.6 -3.25802 | overlap 632372 632393 AAGATAAACTGTTTT GTCTTC ATC GAAGAC TTCGTCAGTTTCCTA pnp 632497 - 634710 + | polyribonucleotide nucleotidyltransferase cysE 634726 - 635343 + | serine O-acetyltransferase TERM 764 635482 - 635530 + G 71 -6 -4.24285 | opp_overlap 635486 635489 TGCTTAATTTTGACC CAAACATGCCCGCCTTTTTCCT TTATT ATGAAAAAGGCGAACTTGTTGG TTTATTAACTGTCTA TERM 765 635526 - 635486 - g 79 -9.8 -3.65827 | opp_overlap 635482, overlap 635489 TAATTTTGACCCAAA CATGCCCGCCTTTTTCCT TTATT ATGAAAAAGGCGAACTTG TTGGTTTATTAACTG TERM 766 635523 - 635489 - g 72 -10.1 -2.64144 | opp_overlap 635482, overlap 635486 TTTTGACCCAAACAT GCCCGCCTTTTTCCT TTATT ATGAAAAAGGCGAAC TTGTTGGTTTATTAA SPH_0688 635355 - 636239 + | acetyltransferase TERM 767 637557 - 637546 - g 83 -7.2 -4.66609 | GACTTGATTCAAAAA CGCC AAGA GGCG CGTGCCAATCGTGAC cysS 636292 - 637665 + | cysteinyl-tRNA synthetase SPH_0690 637658 - 638044 + | ribonuclease III family protein SPH_0691 638048 - 638932 + | leucine-rich protein TERM 768 638946 - 638972 + F 100 -10.3 -4.96848 | gap 1, opp_overlap 638945 638944 AAAGAAGTTAATATT TGGAGAAGA-GG ATTG CCATCTTCTCCA TTTTTATGTGCAGAG SPH_0692 639069 - 639668 + | hypothetical protein TERM 769 640121 - 640155 + F 79 -9.3 -3.50953 | opp_overlap 640126, overlap 640126 TTAAACGTGCCATAT CAAAACCAGTCCTTG AAAAA CGTGGACTGGTTTCG TGTTTGGATTATTAC TERM 770 640126 - 640150 + F 76 -7.8 -4.02206 | opp_overlap 640126, overlap 640121 CGTGCCATATCAAAA CCAGTCCTTG AAAAA CGTGGACTGG TTTCGTGTTTGGATT SPH_0694 640337 - 641614 + | peptide ABC transporter permease SPH_0695 641627 - 642274 + | peptide ABC transporter ATP-binding protein SPH_0696 642326 - 643705 + | peptide ABC transporter permease TERM 771 643799 - 643830 + F 79 -8.8 -3.79164 | opp_overlap 643798 643799, overlap 643805 CAATTCAAAATAAAT CCGAAAGCAGTGGT GAAA ATCATTGCTTTCAG TTGCTTTCTTTGTAC TERM 772 644518 - 644502 - g 74 -5.1 -4.67353 | CTATCTAGTGAAAAA TGAAGGC CGG GCCTTGA CTCGATCTCAGATTA SPH_0697 644017 - 644673 + | VncR, response regulator SPH_0698 644670 - 645998 + | VncS, histidine kinase fba 646139 - 647020 + | fructose-1,6-bisphosphate aldolase, class II TERM 773 647045 - 647062 + T 74 -3.3 -5.37593 | opp_overlap 647036 647045 ATAATACAGATAAAA CCTGCCT GTGA GGGTGGG TTTTTTGATTTCAAG TERM 774 647331 - 647308 - T 100 -12.5 -5.24129 | opp_overlap 647308 647303 TTTGGCTATAAAAAA CTCTCCTGG GAAATT CCAGGAGAG TATGATTACTTATTT TERM 775 647308 - 647331 + T 88 -13.2 -3.0003 | opp_overlap 647308, overlap 647303 TTTGGCTATAAAAAA CTCTCCTGGG AAAT TCCAGGAGAG TATGATTACTTATTT SPH_0700 648531 - 647341 - | oxidoreductase, NAD-binding TERM 776 648667 - 648647 - R 100 -10.5 -5.14965 | opp_overlap 648644 ACTCTCATCAAAAAA CTCTCCAAT TGA ACTGGAGAG TGGCTGTTTATACTC SPH_0701 649448 - 648789 - | ABC transporter membrane-spanning permease - glutamine transport SPH_0702 650135 - 649458 - | ABC transporter membrane-spanning permease - glutamine transport TERM 777 649756 - 649744 - G 77 -7.7 -4.26188 | CTGATATAGGTAAAA CCTTG CGA CAAGG CGGCCTCCATCTGAC SPH_0703 650942 - 650148 - | glutamine ABC transporter substrate-binding protein SPH_0704 651711 - 650953 - | glutamine transport ATP-binding protein GlnQ TERM 778 651612 - 651627 + g 81 -7.6 -4.56597 | opp_overlap 651603 651612 CAGAAGGTCCAAGCA GGACAA CAAC TTGTCC TTTTTCAAAACGGAG TERM 779 651804 - 651791 - H 79 -5.3 -5.07567 | CCATATCTGAAAAAA TTCAC TATA GTGAA ATAAGAACAGGACAA recJ 651988 - 654210 + | single-stranded-DNA-specific exonuclease RecJ TERM 780 654222 - 654239 + F 83 -6.3 -5.00616 | opp_overlap 654222 654237 654238 GTAGAAGTTAGGAAA GAGTTGG GAAA TCAACTC TTTTTTGAAAACAGA TERM 781 654456 - 654466 + G 89 -5.4 -5.48213 | opp_overlap 654456 GTACATTGCTGAAAT TGGA GAG TCCA TTTTTGTTTTGAATG SPH_0706 654385 - 656046 + | metallo-beta-lactamase superfamily protein TERM 782 656064 - 656088 + F 79 -10.1 -3.29511 | opp_overlap 656070, overlap 656070 GTTGAAATAAACAGG GAGAAAGTCGA GTT TCGGCTTTTTC TTATCGGAAAATAGA TERM 783 656070 - 656082 + F 79 -5.5 -5.18726 | opp_overlap 656070, overlap 656064 ATAAACAGGGAGAAA GTCGA GTT TCGGC TTTTTCTTATCGGAA TERM 784 656710 - 656690 - g 79 -5.4 -4.90296 | overlap 656692 AAAATCGGATAAAAA GACCAAGC TCTGG GCTTGGTG TGGCGAGCAGGATTT TERM 785 656708 - 656692 - g 75 -8 -4.05669 | overlap 656690 AATCGGATAAAAAGA CCAAGC TCTGG GCTTGG TGTGGCGAGCAGGAT TERM 786 656865 - 656832 - g 71 -5.3 -4.60487 | opp_overlap 656831 656832 TACTACTGGGAAAAA CAATTGGAACGGTTT TTAA AAACCCTACCGATTG ATTTCAAATTAGAAG SPH_0707 656115 - 656894 + | tributyrin esterase TERM 787 657701 - 657691 - g 75 -2.6 -5.31275 | GCTTATTATAAAAAA TTAT TAG ATAA CTTCAAAGAAGACTC SPH_0708 657025 - 658245 + | MurM TERM 788 659064 - 659050 - g 74 -5 -4.7373 | overlap 659052 TGATTTGAGTAAAAA TCCTCA TTC TGAGAA AAAACAAAATCAACT SPH_0709 658250 - 659482 + | MurN TERM 789 659752 - 659730 - g 93 -10 -4.73388 | AACGGTCAGTAAAAA TTGGTCAACA AAG TATTGACCAA TGGGAGAAAACAGGG SPH_0710 659561 - 660262 + | matrixin family protein TERM 790 660259 - 660280 + F 85 -4.4 -5.59357 | ATATGAGACTAGTGA GTAGGGTA CTATCT TTCCCTAC TTTTTTTGCTATAAT uvrC 660302 - 662149 + | excinuclease ABC, C subunit SPH_0712 662139 - 662972 + | metallophosphoesterase TERM 791 663027 - 663007 - T 85 -6.8 -5.38497 | opp_overlap 663007 ATGCAAACTAAAAAA GCGATTGG CTGTT CCCATCGC TTTTAGTATATCTTA TERM 792 663007 - 663027 + T 74 -6.8 -4.4296 | opp_overlap 663007 ATGCAAACTAAAAAA GCGATTGG CTGTT CCCATCGC TTTTAGTATATCTTA SPH_0713 663954 - 663154 - | glutamine ABC transporter substrate-binding protein TERM 793 663796 - 663783 - G 71 -6.7 -4.08216 | CTACTGCCTTTAAAA CTTCG ATAT CGAAG CCTGTCAGATTGCCC SPH_0714 664125 - 664730 + | oxidoreductase pepV 664743 - 666143 + | dipeptidase PepV SPH_0716 666197 - 666775 + | uracil DNA glycosylase family protein SPH_0717 666935 - 667087 + | hypothetical protein SPH_0718 667103 - 667222 + | hypothetical protein TERM 794 667233 - 667264 + F 95 -8.8 -5.63236 | overlap 667234 TTTAAAATTTTGCAT TTCTCCTACTTGGT GTGG ACTGGGTAGGAGAG TTTTTATTTTTAGAT TERM 795 667234 - 667263 + F 87 -10.1 -3.95502 | overlap 667233 TTAAAATTTTGCATT TCTCCTACTTGGT GTGG ACTGGGTAGGAGA GTTTTTATTTTTAGA TERM 796 667505 - 667518 + G 86 -8.1 -4.89567 | GGAGAACATTTTCTT CCTGC CATC GCAGG TTTTGTCTTTTCAGG brnQ 667394 - 668719 + | branched-chain amino acid transport system II carrier protein TERM 797 668724 - 668763 + F 84 -3.7 -5.626 | opp_overlap 668729, overlap 668729 AAATGGAATAATCAC TTAAATCACTTTTGTAG CCAAGT CTACAGGAGTGATTTTC TTTTTTTATCCGATG TERM 798 668729 - 668758 + F 93 -8 -5.61277 | opp_overlap 668729, overlap 668724 GAATAATCACTTAAA TCACTTTTGTAG CCAAGT CTACAGGAGTGA TTTTCTTTTTTTATC SPH_0720 668817 - 669854 + | peptidase, M42 SPH_0721 669856 - 670317 + | HIT family protein SPH_0722 670332 - 671048 + | D-alanyl-D-alanine carboxypeptidase TERM 799 671426 - 671385 - g 80 -6.5 -4.82901 | overlap 671388 CTTTCGTTACAAAAA CACCACCAGCTGCTGTTCT TTTG AAAAAAGCTGCAGGTGTTG AAAAAGGATCAGGTA rplK 671171 - 671596 + | ribosomal protein L11 TERM 800 672385 - 672356 - g 83 -7.3 -4.66833 | TTTGAAGCTGAAAAA TTGGTTGAAAACT TTAA AGCTTTCAACGAA ACAATCCAAAAAGCA rplA 671804 - 672493 + | ribosomal protein L1 TERM 801 672519 - 672540 + T 89 -6.7 -5.58454 | gap 1, opp_overlap 672519 AAGTAATGTAAAAAA GTTGAAGACA CTA TGTCT-CAAC TTTTTTTGATGTACG TERM 802 672540 - 672519 - T 84 -6.7 -5.1848 | gap 1, opp_overlap 672519 AAGTAATGTAAAAAA GTTGAAGACA CTA TGTCT-CAAC TTTTTTTGATGTACG TERM 803 672678 - 672661 - T 75 -7 -4.26903 | opp_overlap 672661 GGTAGCGGATTAAAA CGGTCT GGGGAT AGACCG TTTTAAGTCTGACGC TERM 804 672661 - 672678 + T 78 -7.7 -4.2349 | opp_overlap 672661 GGTAGCGGATTAAAA CGGTCTG GGGA TAGACCG TTTTAAGTCTGACGC TERM 805 672845 - 672879 + T 79 -9.3 -3.50953 | opp_overlap 672850, overlap 672850 TTAAACGTGCTATAT CAAAACCAGTCCTTG AAAAA CGTGGACTGGTTTCG TGTTTGGATTATTAC TERM 806 672850 - 672874 + T 76 -7.8 -4.02206 | opp_overlap 672850, overlap 672845 CGTGCTATATCAAAA CCAGTCCTTG AAAAA CGTGGACTGG TTTCGTGTTTGGATT SPH_0725 673225 - 673034 - | chlorohydrolase TERM 807 673139 - 673121 - G 72 -10.4 -2.61383 | overlap 673120 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CTGACTACGTCAGTT TERM 808 673184 - 673166 - G 72 -10.4 -2.61383 | opp_overlap 673182, overlap 673165 AGTTCCATCTACAAC CTCAAAAC AGT GTTTTGAG CAACCTGAGGCTAGT SPH_0726 673239 - 673601 + | hypothetical protein SPH_0727 674646 - 675638 + | ABC transporter ATP-binding protein - role in polysaccharide efflux SPH_0728 675640 - 676458 + | membrane protein SPH_0729 676460 - 677245 + | ABC transporter permease protein TERM 809 677546 - 677536 - g 79 -5.4 -4.92314 | opp_overlap 677536 ATCAAGGTAGAAAAA TTGG GAG CCAA TTGCTTGCTACTTTA SPH_0730 677284 - 677562 + | hypothetical protein SPH_0731 677547 - 677744 + | hypothetical protein TERM 810 677887 - 677915 + T 83 -8.3 -4.41237 | opp_overlap 677885 677887 677890 TAGATAGGTAGAAGA TAACCGTTAAG CCTTACT CTTAGCGGTTA TTTATATTGTTTAAT SPH_0732 678244 - 678020 - | hypothetical protein TERM 811 678158 - 678140 - G 72 -10.4 -2.61383 | opp_overlap 678139 678156, overlap 678139 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CTGACTTCGTCAGTT TERM 812 678156 - 678174 + g 71 -9.6 -2.87931 | opp_overlap 678140 678139, overlap 678139 678159 TCAAAACAGTGTTTT GAGCTGAC TTC GTCAGTTC TATCTACAACCTCAA TERM 813 678203 - 678185 - G 72 -10.4 -2.61383 | overlap 678184 AGTTCTATCTACAAC CTCAAAAC AGT GTTTTGAG CAACCTGCGGCTAGT SPH_0733 678477 - 684893 + | serine protease TERM 814 685101 - 685123 + T 100 -13.6 -5.27779 | opp_overlap 685105 GTCAGCTAAGCTCGA GAAAGGACAA ATT TTGTCCTTTC TTTTTTGATATTCAG TERM 815 685119 - 685105 - T 79 -8.6 -3.89614 | opp_overlap 685101 GCTAAGCTCGAGAAA GGACAA ATT TTGTCC TTTCTTTTTTGATAT TERM 816 685537 - 685570 + T 84 -8.3 -4.63928 | opp_overlap 685541, overlap 685541 ACTATAAATTCATCA GAAAGTCGTGATTTC TATT GAAATGAGGACTTTC TTTTTACACTCATCT SPH_0735 685825 - 685580 - | transposase family protein TERM 817 686633 - 686619 - H 100 -10 -4.2828 | opp_overlap 686619 TGGGACGGAGTAAAA GAGTCC AGT GGACTC TTTTAGCCTAAGCTA TERM 818 686619 - 686633 + H 93 -10 -4.14243 | opp_overlap 686619 TGGGACGGAGTAAAA GAGTCC AGT GGACTC TTTTAGCCTAAGCTA TERM 819 687024 - 686983 - H 100 -9.7 -4.68601 | gap 1, opp_overlap 686983 AGTGAAAATAAGAAA TCTCCAGATTAG-GAACT ATCCGTG AGTTCTCTAGTCTGGAGA TTTTTCAATAGACTT TERM 820 686983 - 687024 + H 100 -11.9 -4.67011 | gap 1, opp_overlap 686983 AGTGAAAATAAGAAA TCTCCAGATTAG-GAACT ATCCGTG AGTTCTCTAGTCTGGAGA TTTTTCAATAGACTT TERM 821 687111 - 687093 - H 78 -10.4 -2.61383 | overlap 687092 AGTCTTATCTACAAC CTCAAAAC TGT GTTTTGAG CAACCTGCGGCTAGC TERM 822 687774 - 687760 - g 74 -5 -4.76644 | AAGACCTATCAAAAA TTTCCG AAC CAGAAA AACTTTATGCTTACA SPH_0738 687333 - 687809 + | phosphotransferase system sugar-specific EII component SPH_0739 687847 - 688152 + | PTS system, galactose-specific IIB component SPH_0740 688200 - 689675 + | phosphotransferase system sugar-specific EII component TERM 823 689831 - 689819 - f 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAACATGGTTT TERM 824 689832 - 689850 + F 78 -10.4 -2.61383 | opp_overlap 689831, overlap 689831 AACTGACGAAGTCAG CTCAAAAC ATG GTTTTGAG GTTGTAGATGAAACT TERM 825 689876 - 689864 - f 73 -7.7 -3.83205 | opp_overlap 689859 AGGTTGTAGATGAAA CTGAC GAA GTCAG TAATCATATCTACGG TERM 826 693353 - 693343 - g 70 -5.4 -4.34263 | GCCGAAGAAGATAAA GCTA AGT TAGC AATTCCAGGTTCTCG TERM 827 693436 - 693488 + G 85 -12.7 -3.17051 | opp_overlap 693427 693435, overlap 693434 GTAGAAGAAGGCAAT CCTGCGGCACCTGCAGTACCAACTG TAA CGGTTGGTGGTGAAGCTGTCACAGG TCTTACTAGTCAAAA TERM 828 695950 - 695938 - g 73 -7.7 -3.84451 | GCTGTCAAAGCCAAA GCCAT GAG ATGGC GTATGGAGCGTAAAG TERM 829 696278 - 696268 - g 70 -3.2 -4.90266 | TTGACTAAGGAAAAA CCAG TTT CTGA GAAGACAGTTGCTGC TERM 830 696436 - 696413 - g 72 -3.3 -5.03201 | gap 1 AACAAGAAGGAAAAA CTGGTAAAGA ACGTA TCTTTA-CAG CGATTAATCCTGATG SPH_0741 690025 - 696726 + | beta-galactosidase SPH_0742 697597 - 696974 - | hypothetical protein TERM 831 697486 - 697506 + g 77 -6.1 -4.63218 | overlap 697487 TCTGTTCTTGAAGTT TGGCGGAGA ATT TCTCTGTCG TTTTCTTCCACACAA SPH_0743 697830 - 697585 - | hypothetical protein TERM 832 697900 - 697918 + Gr 100 -10.3 -5.42259 | opp_overlap 697900 CAACCATGCAAAAAA GCAACGG CAAAT CCGTTGC TTTTTTTGGAGATAA TERM 833 697918 - 697900 - gR 100 -10.3 -5.12617 | opp_overlap 697900 CAACCATGCAAAAAA GCAACGG CAAAT CCGTTGC TTTTTTTGGAGATAA SPH_0744 697800 - 697967 + | hypothetical protein SPH_0745 698400 - 698041 - | integral membrane protein TERM 834 698566 - 698554 - H 74 -6.3 -4.37092 | opp_overlap 698541, overlap 698541 ACTCTTTGGAGAAAA GACTT TTA AAGTC CCTATTGATGCGGGA TERM 835 698729 - 698750 + H 77 -5.9 -4.66535 | ATTCACCGTAAGTGG CCAGATGTT CAGA AGTATCTGG TTTATTTTCAAAATT SPH_0748 699432 - 699989 + | SAM-dependent methyltransferase SPH_0749 700096 - 700236 + | hypothetical protein TERM 836 702360 - 702376 + F 87 -10.9 -3.48924 | TTACCGTATGTATGT GACTGAC TTC GTCAGTC TTATCTACAACCTCA TERM 837 702406 - 702388 - f 78 -10.4 -2.61383 | overlap 702387 AGTCTTATCTACAAC CTCAAAAC AGT GTTTTGAG CAGCCTGTGGCTAGC TERM 838 702512 - 702526 + G 75 -2.8 -5.2166 | opp_overlap 702512, overlap 702514 AGAGCTGATAGACAA GCCTTT ATT AAAAGC TTTTTTGCATTATTA SPH_0752 702480 - 703340 + | ribonuclease BN TERM 839 703355 - 703406 + F 100 -16.2 -2.93783 | opp_overlap 703360, overlap 703360 ACTATTTATCCATTA TAAAAGCGCATAGTATCAAGACTT TATA GAACCTTGATACTATGCGCTTTTG TGCTTTGACAGTTTT TERM 840 703360 - 703401 + F 100 -13.9 -4.61566 | opp_overlap 703360, overlap 703355 TTATCCATTATAAAA GCGCATAGTATCAAGACTT TATA GAACCTTGATACTATGCGC TTTTGTGCTTTGACA TERM 841 703401 - 703360 - f 100 -17.6 -4.4767 | opp_overlap 703360 703355 TTATCCATTATAAAA GCGCATAGTATCAAGACT TTATAG AACCTTGATACTATGCGC TTTTGTGCTTTGACA TERM 842 703550 - 703560 + F 79 -4 -5.49579 | TGATAGGAGGAACTT TATG GGT CATA TTTTCTTTTTTCTAA TERM 843 703591 - 703601 + G 70 -5.4 -4.39226 | GTGTCTTTTTGGCAG GGAT TCT ATCC TTCTTTTCTCCTTGT SPH_0753 703551 - 704261 + | cytochrome c-type biogenesis protein TERM 844 704308 - 704323 + G 74 -6.1 -4.42464 | overlap 704305 CAAACATGTGTTCTT GGAGC AGGTTC GCTCC TTTGTTTGACGGCTT SPH_0754 704281 - 704847 + | thioredoxin family protein TERM 845 705301 - 705315 + G 73 -8.6 -3.6761 | overlap 705300 AAATGATGTGGGGAC CCAGTA CCG TACTGG TGTTTATTACACAGA SPH_0755 704858 - 705970 + | peptide methionine sulfoxide reductase MsrA/msrB TERM 846 706028 - 706040 + F 82 -7.7 -4.52857 | CCGTATGTAGGGTTA CTGAC TTC GTCAG TTTTATCTACAACCT TERM 847 706073 - 706085 + F 82 -7.7 -4.52857 | AAGCTATACTTTGAG CTGAC TTC GTCAG TTTTATCTACAACCT TERM 848 706118 - 706130 + F 82 -7.7 -4.52857 | AAGCTATACTTTGAG CTGAC TTC GTCAG TTTTATCTACAACCT TERM 849 706163 - 706175 + F 82 -7.7 -4.52857 | AAGCTATACTTTGAG CTGAC TTC GTCAG TTTTATCTACAACCT TERM 850 706208 - 706220 + F 82 -7.7 -4.52857 | AAGCTATACTTTGAG CTGAC TTC GTCAG TTTTATCTACAACCT TERM 851 706253 - 706265 + F 88 -7.7 -4.87133 | AAGCTATACTTTGAG CTGAC TTC GTCAG TTTTATTTACAACCT SPH_0756 706418 - 707155 + | response regulator TERM 852 707142 - 707167 + F 81 -7.6 -4.42238 | opp_overlap 707141 707144 GTCAGTTTAAGAAGG GAGAAGACCG ATGAAG CGTTCTTCTC TTTTAGTTAGAATGG SPH_0757 707152 - 708843 + | histidine kinase TERM 853 708844 - 708863 + F 93 -9.3 -4.44915 | opp_overlap 708844 ATAGAAACTAGCTAA CTCCCAG TCAATT CTGGGAG TTTTATGCGTAATTG TERM 854 708863 - 708844 - f 77 -9.3 -3.182 | opp_overlap 708844 ATAGAAACTAGCTAA CTCCCAG TCAATT CTGGGAG TTTTATGCGTAATTG SPH_0758 708959 - 709522 + | hypothetical protein TERM 855 711153 - 711140 - g 71 -5.3 -4.58242 | AAAAAAGGCACAAAA GGTTT AGAA AAACC AACCTTAGAATGGGT TERM 856 711750 - 711734 - g 70 -5.9 -4.41633 | opp_overlap 711734, overlap 711731 711735 TACTTTGAAAAACAA CTTCCAA AAA TTGGAAA TGTGTATTACAACTT TERM 857 711806 - 711795 - g 72 -3.6 -5.14477 | CAGATATGCAAAAAA CACC GAAT GGCG AGTTTAAACTTGGTG TERM 858 712913 - 712897 - g 70 -8 -3.74361 | opp_overlap 712896 712897, overlap 712894 TATAGGTATGAAGAA CGGTCA GTTCG TGACCG ATTTGTCTGATATTG zmpB 709544 - 715246 + | zinc metalloprotease ZmpB TERM 859 715299 - 715273 - f 73 -3.7 -5.20216 | opp_overlap 715273 715295 TAGATGAGTAAAAAA GGTAGATTAAG TTTTT CTTGATCTGCC TTTTTATGCTATACT TERM 860 715273 - 715299 + F 90 -8.1 -4.95758 | opp_overlap 715273, overlap 715295 TAGATGAGTAAAAAA GGTAGATTAAG TTTTT CTTGATCTGCC TTTTTATGCTATACT TERM 861 715848 - 715860 + G 79 -4.8 -5.00884 | GGCAGTGATTTCCAT GAGC CCAGA GCTC TTTTTTGAGCAAAAT SPH_0760 715321 - 717042 + | chorismate binding enzyme SPH_0761 717043 - 717660 + | hypothetical protein SPH_0762 717710 - 718636 + | Excalibur domain-containing protein TERM 862 718741 - 718770 + F 81 -10.9 -2.79239 | opp_overlap 718741, overlap 718738 718737 AAAAATTCCTTATAA TTCACTTACGCAA ACCT TTGCATAAGTGAA TGGATTTTGATATAC TERM 863 718770 - 718741 - f 91 -13.1 -3.3341 | opp_overlap 718741 718738 718737 AAAAATTCCTTATAA TTCACTTACGCAA ACCT TTGCATAAGTGAA TGGATTTTGATATAC SPH_0763 718835 - 719794 + | glucokinase (glucose kinase) TERM 864 719800 - 719846 + F 89 -7.5 -5.34555 | opp_overlap 719805 719807 719814, overlap 719805 ATTGCAATAAGATAA TGAGAGAGGAAAAATGCTAAC CTAGA GTTAGTAATGTTCCTCTTTTA TTTTTTATGCTATAC TERM 865 719805 - 719841 + F 93 -7.4 -5.49579 | opp_overlap 719805 719807 719814, overlap 719800 AATAAGATAATGAGA GAGGAAAAATGCTAAC CTAGA GTTAGTAATGTTCCTC TTTTATTTTTTATGC thyA 719892 - 720731 + | thymidylate synthase TERM 866 720741 - 720774 + T 81 -8.3 -4.18934 | opp_overlap 720746, overlap 720746 ATTTAAAAGAATAGA AAAAAGAAGTTGAGA ATAA TCCCAACTTCTTTTG TTTCTTAACGTGATA TERM 867 720769 - 720746 - T 100 -10.4 -5.57729 | opp_overlap 720746 720741 AAAGAATAGAAAAAA GAAGTTGAGA ATAA TCCCAACTTC TTTTGTTTCTTAACG TERM 868 720746 - 720769 + T 90 -8.2 -5.09762 | opp_overlap 720746, overlap 720741 AAAGAATAGAAAAAA GAAGTTGAGA ATAA TCCCAACTTC TTTTGTTTCTTAACG TERM 869 720791 - 720805 + T 77 -4.9 -5.15117 | TTCTTAACGTGATAC GCGGC GACGA GCTGC TTTTTTACGATTTTC SPH_0765 720949 - 720779 - | hypothetical protein TERM 870 721274 - 721290 + G 80 -6.5 -4.81644 | opp_overlap 721275, overlap 721275 GATGTTAGAGAGATA ACCGAGT CTT ACTCGGC TTTTGATTTTGTTTC TERM 871 721275 - 721289 + G 79 -10 -3.46546 | opp_overlap 721275, overlap 721274 ATGTTAGAGAGATAA CCGAGT CTT ACTCGG CTTTTGATTTTGTTT TERM 872 721289 - 721275 - g 80 -10 -3.64466 | opp_overlap 721275 721274 ATGTTAGAGAGATAA CCGAGT CTT ACTCGG CTTTTGATTTTGTTT miaA 721070 - 721954 + | tRNA delta(2)-isopentenylpyrophosphate transferase hflX 721947 - 723185 + | GTP-binding proten HflX SPH_0768 723178 - 723801 + | cystathionine beta-lyase rnz 723816 - 724745 + | ribonuclease Z SPH_0770 724766 - 725521 + | oxidoreductase TERM 873 725519 - 725570 + T 79 -8.2 -3.91144 | opp_overlap 725525, overlap 725525 725528 ACTTTTAATTATAAG TAAAAAGAACCAATGTGCAGGTTG TTGC TAGCCTACATATTGGTTCTTATCA TTTCTCAACTATCAA TERM 874 725525 - 725564 + T 90 -11.6 -3.64915 | opp_overlap 725525, overlap 725519 725528 AATTATAAGTAAAAA GAACCAATGTGCAGGTTG TTGC TAGCCTACATATTGGTTC TTATCATTTCTCAAC TERM 875 725564 - 725525 - T 95 -8.7 -4.95876 | opp_overlap 725525 725519 725528 AATTATAAGTAAAAA GAACCAATGTGCAGGTT GTTGCT AGCCTACATATTGGTTC TTATCATTTCTCAAC TERM 876 725528 - 725561 + T 76 -7.5 -3.94823 | opp_overlap 725525, overlap 725525 725519 TATAAGTAAAAAGAA CCAATGTGCAGGTTG TTGC TAGCCTACATATTGG TTCTTATCATTTCTC SPH_0771 726543 - 725575 - | regulatory function on capsule expression SPH_0772 726547 - 726816 + | hypothetical protein SPH_0773 726816 - 727196 + | rhodanese family protein SPH_0774 727285 - 727512 + | hypothetical protein TERM 877 727518 - 727549 + T 74 -6.8 -4.40804 | opp_overlap 727519 727526, overlap 727526 TTTTCGGTAAATAAA AGAAAAAAGCTTTA GTTT TAAAGCTTTTTTTA TTTTATCGACTCATC TERM 878 727548 - 727519 - T 90 -8.1 -4.86731 | opp_overlap 727518 727526, overlap 727526 TTTCGGTAAATAAAA GAAAAAAGCTTTA GTTT TAAAGCTTTTTTT ATTTTATCGACTCAT TERM 879 727526 - 727541 + T 95 -6.2 -6.14618 | opp_overlap 727519 727526, overlap 727518 AAATAAAAGAAAAAA GCTTTA GTTT TAAAGC TTTTTTTATTTTATC TERM 880 727541 - 727526 - T 93 -6.2 -5.95449 | opp_overlap 727526 727518, overlap 727519 AAATAAAAGAAAAAA GCTTTA GTTT TAAAGC TTTTTTTATTTTATC SPH_0775 728277 - 727552 - | ribosomal small subunit pseudouridine synthase A, putative TERM 881 728807 - 728793 - g 83 -6.4 -5.08824 | opp_overlap 728793 TTCGTATTGAAAAAA GCCTTG GAA CAAGAC CTTGTCCCAATCGTG typA 728439 - 730280 + | GTP-binding protein TypA/BipA SPH_0777 730300 - 730554 + | hypothetical protein TERM 882 730574 - 730559 - f 83 -4.7 -5.57729 | opp_overlap 730559 AAAGAAGATAAAAAA GAGAG TTTCGG CTCTC TTTTTGCTAGGAATT TERM 883 730559 - 730574 + F 74 -5.4 -4.73388 | opp_overlap 730559 AAAGAAGATAAAAAA GAGAGT TTCG GCTCTC TTTTTGCTAGGAATT TERM 884 730883 - 730895 + F 77 -3.3 -5.40072 | TTTTGTTGCATTGTT GCTCA AGG TGTGC TTTTTTTGAAAGAAA TERM 885 731141 - 731131 - g 71 -6.8 -4.06678 | overlap 731138 AGTCATTCAGATAAA GGAG AAG CTCC TGCTGGAAAAACCTC SPH_0778 730918 - 731217 + | bacteriocin TERM 886 731238 - 731265 + F 100 -13.6 -4.86731 | opp_overlap 731236 CATTGATTTAAATCG TTCCCCTTGTAA GAAA TTACAGGGGGAA TTTTGTTTACAAGGA TERM 887 733646 - 733636 - g 79 -5.4 -4.87893 | opp_overlap 733636 AAGTTGAAGGAAAAA GAGA AAA TCTC TTTGATGAAACAAGC TERM 888 733867 - 733857 - g 85 -6.8 -5.06103 | AGAATCTTTAAAAAA TCCG AAT CGGA CCATTATTATTGCGA SPH_0781 733309 - 733950 + | ABC transporter, ATP-binding protein TERM 889 733978 - 733998 + F 88 -6.2 -5.65927 | opp_overlap 733986 CAGTTAGAAGAAAGA GTCACAAA CACAC TTTGTGGC TTTTTTATTTCCATA TERM 890 734465 - 734477 + G 70 -5.5 -4.3739 | GTTTTGACTGCTGCT GGCCA ACA TGGTC TTTTATCAGGGAATA murD 734054 - 735406 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase SPH_0783 735408 - 736466 + | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase SPH_0784 736476 - 737642 + | cell division protein DivIB TERM 891 737800 - 737816 + F 70 -4.3 -4.7254 | opp_overlap 737801, overlap 737801 AGGTTAGACGGTGAA AGGGTGG AGA CTACCCA TTTTTCGTGGAACCT TERM 892 737825 - 737848 + F 90 -8.2 -5.18357 | gap 1 CTACCCATTTTTCGT GGAACCTTGCT GTT GGCA-GGTTCC TTTTTTCGTGGCTTC pyrF 737908 - 738609 + | orotidine 5'-phosphate decarboxylase pyrE 738643 - 739275 + | orotate phosphoribosyltransferase TERM 893 739297 - 739312 + F 89 -9 -4.30559 | opp_overlap 739292 739297 739296 739294 739299 AAGATAAAGAGAGAC GAGGCT ACCG AGCCTC TTTTACCATTTTATT TERM 894 739321 - 739354 + F 83 -11.5 -2.71263 | opp_overlap 739341 GAGCCTCTTTTACCA TTTTATTTAAAATAT GACA ATATTTTAAATAAAA TGATTGACAACGCTT SPH_0787 739736 - 739858 + | hypothetical protein TERM 895 739896 - 739929 + F 83 -6.2 -5.18726 | gap 1, overlap 739897 AAAGATGGTTGATTG T-GGGTGTAGCAT GAAAAAAGA ATGCTACACCCTA TTTTTATTATAAGGA TERM 896 739897 - 739927 + F 100 -11.3 -4.22377 | overlap 739896 AAGATGGTTGATTGT GGGTGTAGCAT GAAAAAAGA ATGCTACACCC TATTTTTATTATAAG SPH_0788 739954 - 740718 + | hypothetical protein SPH_0789 740718 - 741470 + | putative lipoprotein TERM 897 741641 - 741652 + G 80 -4.4 -5.30189 | AAAAGGGCCTAATCT GAGT CAAA ACTC TTTTTTAGTCTTATC SPH_0790 741474 - 742178 + | hypothetical protein SPH_0791 742175 - 742822 + | ABC transporter, ATP-binding protein SPH_0792 743775 - 742909 - | amino acid ABC transporter periplasmic protein SPH_0797 745854 - 745234 - | ABC transporter membrane-spanning permease - glutamine transport TERM 898 745971 - 745983 + H 76 -2.7 -5.4756 | ACTTAAAATCTTCTT TGGAT AAT ATCTA TTTTTTATTGCCGTT SPH_0798 746129 - 746275 + | hypothetical protein lysS 746403 - 747893 + | lysyl-tRNA synthetase TERM 899 747901 - 747922 + F 84 -5.8 -5.26875 | overlap 747902 TGAAATAAATTCTTA CCCTCTGG CTCTTA CCAGAGGA TTTTTTGATTCAAAA TERM 900 747902 - 747921 + F 81 -9.3 -3.75402 | overlap 747901 GAAATAAATTCTTAC CCTCTGG CTCTTA CCAGAGG ATTTTTTGATTCAAA TERM 901 749667 - 749685 + F 100 -10.3 -5.17744 | opp_overlap 749665 TGATAAAACAGATTG CCTCCAC TGAAT GTGGAGG TTTTTCTTCGTGTAT SPH_0802 750209 - 750877 + | TENA/THI-4 family protein SPH_0803 751063 - 750932 - | hypothetical protein TERM 902 750977 - 750959 - G 72 -10.4 -2.61383 | opp_overlap 750958 750975, overlap 750958 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CTGACTTCGTCAGTC TERM 903 751226 - 751195 - g 93 -7.4 -5.50723 | opp_overlap 751201 751205, overlap 751196 TTATTAAAAGAAAAA GCACCATTGGTCAT TTGT ATAACCAATGATGT AGTAAAAAATTTCAC TERM 904 751225 - 751196 - g 86 -10.9 -3.88807 | opp_overlap 751201 751205, overlap 751195 TATTAAAAGAAAAAG CACCATTGGTCAT TTGT ATAACCAATGATG TAGTAAAAAATTTCA thiM 751165 - 751947 + | hydroxyethylthiazole kinase thiE1 751949 - 752578 + | thiamine-phosphate pyrophosphorylase TERM 905 752915 - 752939 + F 89 -3 -5.79595 | gap 1 ATCTTGTAAGCTGAA CTCTAATT-CG TATC TGTAATTAGAG TTTTTTCTTTTACGA SPH_0806 753137 - 753697 + | ABC-type cobalt transport system, permease component SPH_0807 753698 - 755083 + | ABC transporter ATP-binding protein - cobalt or other cation transport SPH_0808 755085 - 755735 + | hypothetical protein SPH_0809 755746 - 756438 + | TENA/THI-4 family protein thiW 756443 - 756967 + | ThiW protein SPH_0811 756967 - 757770 + | hydroxyethylthiazole kinase thiE2 757763 - 758395 + | thiamine-phosphate pyrophosphorylase TERM 906 758595 - 758563 - T 100 -12.9 -4.98436 | opp_overlap 758552 758563 CGAAGAGTATAAAAA CTCTCTAATTCCC TTAAAGT GGGAACTAGAGAG TTTTTTTCTTAATCT TERM 907 758563 - 758595 + T 100 -10.7 -5.85737 | opp_overlap 758563, overlap 758552 CGAAGAGTATAAAAA CTCTCTAATTCCC TTAAAGT GGGAACTAGAGAG TTTTTTTCTTAATCT thiD 759395 - 758604 - | phosphomethylpyrimidine kinase SPH_0814 759761 - 760156 + | CopY/TcrY family copper transport repressor SPH_0815 760167 - 760538 + | hypothetical protein TERM 908 762105 - 762093 - g 74 -6.3 -4.32201 | CGAATCAATGGAAAA CAAGT TTT ACTTG GAAATGCTAAAATGC SPH_0816 760548 - 762791 + | copper-translocating P-type ATPase TERM 909 763031 - 763014 - g 71 -6.3 -4.28774 | opp_overlap 763014 TGACTCAAGGGAAAA TTACTGC ATCT GCAGCAA TGCTTAACGTATTGA spxB 762998 - 764773 + | pyruvate oxidase TERM 910 764847 - 764864 + F 83 -7.7 -4.82901 | opp_overlap 764836 764847 764850 AGCAGAACTTTAAAA GATCGGA GCAA TCCGGTC TTTTTATGGAGGAGA SPH_0818 764884 - 765231 + | glyoxalase family protein TERM 911 765301 - 765318 + T 88 -7.7 -4.96848 | opp_overlap 765301 765304 TATGAACTATTGAAA GATCGGA GCAA TCCGGTC TTTTTATATAAAGAA SPH_0820 766154 - 765888 - | transposase TERM 912 766490 - 766526 + r 71 -5.4 -4.46212 | gap 2, opp_overlap 766490 TAAGTAATTAAATAA CGCATAAG-TCA-AGTAT TAA ATACCATGATCTTATGCG TTTTATAATAAAAAA TERM 913 766526 - 766490 - R 78 -7.6 -4.12043 | gap 2, opp_overlap 766490 TAAGTAATTAAATAA CGCATAAG-TCA-AGTAT TAA ATACCATGATCTTATGCG TTTTATAATAAAAAA SPH_0822 767313 - 766705 - | hypothetical protein TERM 914 767427 - 767415 - H 77 -3.5 -5.40004 | GAGGAAAGGAAAAAA TTATT ATG AATAA ATCCAAAAAATATAA TERM 915 768299 - 768278 - H 71 -3.2 -5.11112 | AAATTTTAATAAAAA TTTTTTAA AATAAA TTAAAAAA CGATCCTAAAAGGGT TERM 916 768316 - 768300 - H 87 -6.5 -5.48163 | opp_overlap 768300 AAATAAATTAAAAAA CGATCCT AAA AGGGTCG TTTTTTTGCTAAAGT TERM 917 768300 - 768316 + H 95 -8.7 -5.52986 | opp_overlap 768300 AAATAAATTAAAAAA CGATCCT AAA AGGGTCG TTTTTTTGCTAAAGT TERM 918 768994 - 768982 - H 82 -3.5 -5.72207 | TGGAAACTAAAAAAA TTAAA AAA TTTAA AAGGTCAAATAATTG SPH_0824 769060 - 769653 + | NanE/NanK bifunctional enzyme TERM 919 770511 - 770529 + G 74 -4.6 -4.88795 | opp_overlap 770511 AGTAGGATTATTTAA TAACATAG TAG CTTTGTTA TTTGTTTTATTAGCT SPH_0825 769654 - 770586 + | protein LplB SPH_0826 770597 - 771526 + | protein LplC TERM 920 772882 - 772872 - g 82 -4 -5.5074 | opp_overlap 772872 GAATTTAATAAAAAA TCTA TCT TAGA TTTAGGTAATTCTCC SPH_0827 771540 - 772979 + | hypothetical protein SPH_0828 773048 - 774625 + | extracellular solute-binding protein TERM 921 774663 - 774632 - f 93 -11.7 -3.97911 | ATGAAATAGACTAAA TGGTAGCTCTCTG GTTTTT CAGAGAGCTACTA CTGCCTGAGGGGGAG SPH_0829 774727 - 776145 + | putative dihydrolipoamide dehydrogenase SPH_0830 776167 - 776622 + | diadenosine tetraphosphate SPH_0833 777127 - 777576 + | hypothetical protein SPH_0835 778035 - 777904 - | hypothetical protein SPH_0836 778100 - 778381 + | 6-phospho-beta-glucosidase AscB, truncation TERM 922 778467 - 778451 - f 84 -6.6 -5.17054 | opp_overlap 778443 778451 ATAAGATGTAAAAAA GAGTTC AAATG GAACTC TTTTTTTGCTATAAT TERM 923 778451 - 778467 + F 89 -6.6 -5.59357 | opp_overlap 778451, overlap 778443 ATAAGATGTAAAAAA GAGTTC AAATG GAACTC TTTTTTTGCTATAAT manA 778513 - 779457 + | mannose-6-phosphate isomerase, class I TERM 924 779494 - 779462 - T 100 -10 -5.28176 | opp_overlap 779466, overlap 779466 GTCATCCATAAAAAA GAAAGGACCTGAGT TCATT ACTCAAGTCCTTTT GATTACATAAATTGG TERM 925 779490 - 779466 - T 100 -10.8 -5.13354 | opp_overlap 779466, overlap 779462 TCCATAAAAAAGAAA GGACCTGAGT TCATT ACTCAAGTCC TTTTGATTACATAAA TERM 926 779466 - 779490 + T 89 -8.6 -4.43477 | opp_overlap 779466 779462 TCCATAAAAAAGAAA GGACCTGAGT TCATT ACTCAAGTCC TTTTGATTACATAAA SPH_0838 780363 - 779497 - | sodium-dependent transporter TERM 927 780018 - 779965 - G 100 -21.2 -4.06786 | overlap 779967 AGGCAAGACGATAAA GACCAAGCTCGGTCCCCCTTCA GACTGGATAT TGAAGGGGGACCGAGCTTGGAA AATGGCTAGACCTGC TERM 928 780016 - 779967 - G 100 -28.2 -3.62291 | overlap 779965 GCAAGACGATAAAGA CCAAGCTCGGTCCCCCTTCA GACTGGATAT TGAAGGGGGACCGAGCTTGG AAAATGGCTAGACCT TERM 929 781199 - 781157 - R 88 -7.2 -4.98531 | overlap 781151 781191 TTGCCAAAGTAAAAA CGTTTAAAATGTTTTCAACA ACC TATCGAAATCATCGTAAACG CTTCGGATTACGAAT SPH_0841 781463 - 781254 - | hypothetical protein SPH_0843 782686 - 781514 - | hypothetical protein TERM 930 782732 - 782710 - R 100 -11.4 -5.67063 | opp_overlap 782713 TGTACCACAAAAAAA CAAGAGATGA TGG TCACCTCTTG TCAAGAATGCAATTA SPH_0844 783590 - 782745 - | hypothetical protein TERM 931 782866 - 782876 + g 71 -4 -4.99435 | ATTCGCTCTGAGAGC TGTT GAC AACA TTTTTCGTTATTGCG TERM 932 783622 - 783636 + H 76 -2.8 -5.48303 | overlap 783604 783603 TGTCAGTTATACATT GACAAA GGT TCTGTC TTTTTTTACAATTAT SPH_0845 783715 - 784272 + | TetR family transcriptional regulator TERM 933 784705 - 784690 - g 76 -4.6 -5.1356 | opp_overlap 784690, overlap 784674 CTTTATCAAGAAAAA GGGACA GAAT TGACCC ATTTACCACTTGAGA SPH_0846 784291 - 784758 + | ComE operon protein 2 TERM 934 784776 - 784799 + F 82 -5.4 -5.23316 | opp_overlap 784772 784777, overlap 784777 ATTATCAAAAATAAA TGGTTTAGAA AGAT TTTTAAACCG TTTTTTGGTATAATA upp 784826 - 785476 + | uracil phosphoribosyltransferase TERM 935 785516 - 785492 - f 71 -6.6 -4.22475 | gap 1 GATCGAAAAGAAGAA TGACTTGGAAA AGTA TTTCCA-GTCA CGAAAGGAGGTTGGG clpP 785650 - 786240 + | Clp protease TERM 936 786253 - 786272 + F 95 -8.6 -5.59357 | opp_overlap 786253 786252 TAATGATGATAGAAG GCAAACTC GACT GGGTTTGC TTTTTTTGGTATAAT SPH_0849 786319 - 786567 + | hypothetical protein SPH_0850 786669 - 787829 + | ABC transporter substrate-binding protein - branched chain amino acid transport TERM 937 787882 - 787838 - f 100 -10.1 -5.16133 | opp_overlap 787838 787840, overlap 787846 787848 ACCATAATAGAAAAA TGTTGAAATAGGGAATGAGCC TTT GACTCACTCCCTGTTTCGATA TTTAATACTCTTCGA TERM 938 787838 - 787882 + F 95 -12.3 -3.84648 | opp_overlap 787838 787846 787848, overlap 787840 ACCATAATAGAAAAA TGTTGAAATAGGGAATGAGCC TTT GACTCACTCCCTGTTTCGATA TTTAATACTCTTCGA TERM 939 787840 - 787880 + F 93 -12.7 -3.50553 | opp_overlap 787838 787846 787848, overlap 787838 CATAATAGAAAAATG TTGAAATAGGGAATGAGCC TTT GACTCACTCCCTGTTTCGA TATTTAATACTCTTC TERM 940 787874 - 787846 - f 86 -10.3 -3.69455 | opp_overlap 787840 787838, overlap 787838 787848 AGAAAAATGTTGAAA TAGGGAATGAGCC TTT GACTCACTCCCTG TTTCGATATTTAATA TERM 941 787872 - 787848 - f 93 -12.9 -3.41445 | opp_overlap 787840 787838, overlap 787846 787838 AAAAATGTTGAAATA GGGAATGAGCC TTT GACTCACTCCC TGTTTCGATATTTAA TERM 942 787942 - 787958 + F 87 -10.9 -3.48924 | opp_overlap 787939 TTGGATTATATATGT GACTGAC TTC GTCAGTC TTATCTACAACCTCA TERM 943 787989 - 787969 - f 72 -8.3 -3.35996 | overlap 787970 CAGTCTTATCTACAA CCTCAAAGC AGT GCTTTGAGC AACCTGCGGCTAGTT TERM 944 787988 - 787970 - f 84 -11.8 -2.61383 | overlap 787969 AGTCTTATCTACAAC CTCAAAGC AGT GCTTTGAG CAACCTGCGGCTAGT SPH_0851 788097 - 788966 + | high-affinity branched-chain amino acid transport system permeaseprotein LivH (LIV-I protein H) SPH_0852 788970 - 789926 + | ABC transporter membrane-spanning permease - branched chain amino acid transport SPH_0853 789926 - 790690 + | high-affinity branched-chain amino acid transport ATP-binding proteinlivg (LIV-I protein G) TERM 945 791038 - 791025 - g 74 -5.3 -4.6635 | AAATCGTGAAGAAAA TCAAG CAAA CTTGA AGAAGGTTTTCTCAC SPH_0854 790690 - 791400 + | high-affinity branched-chain amino acid transport ATP-binding proteinlivf (LIV-I protein F) TERM 946 791403 - 791417 + F 85 -8.6 -4.25283 | opp_overlap 791403 TCTAGGTGGCTAAAA CAATCC AGT GGATTG TTTTAGTCGGCAGAT TERM 947 791417 - 791403 - f 85 -8.6 -4.08767 | opp_overlap 791403 TCTAGGTGGCTAAAA CAATCC AGT GGATTG TTTTAGTCGGCAGAT TERM 948 792314 - 792304 - g 78 -4 -5.27335 | opp_overlap 792304 GCCTTGAAAGAAAAA TTTG AAG CAAA TGGTATTCAAGTGGA SPH_0855 791707 - 792363 + | AcuB family protein TERM 949 792369 - 792384 + F 95 -9 -5.14563 | opp_overlap 792368 AGTCTTGTAAGAAGG GAAGCC CAAA GGCTTC TTTTTTCATGAAAAG TERM 950 792691 - 792675 - g 70 -9.5 -2.56828 | overlap 792674 792672 AAACACTTACAATAC CTTCCAT AAG ATGGAAG AGTTGCAGGATGAAG prfB 792577 - 793566 + | peptide chain release factor 2 ftsE 793584 - 794276 + | cell division ATP-binding protein FtsE SPH_0858 794269 - 795195 + | cell division ABC transporter, permease protein FtsX TERM 951 795217 - 795234 + F 95 -8.5 -5.14563 | TAGCTGCTTTTATGA GGAGATT GTAA AATCTCC TTTTTTGCTACAAGA TERM 952 795456 - 795429 - f 100 -10.8 -4.18119 | gap 1, opp_overlap 795436, overlap 795430 ATTAAATCATAGAAA GTGCAAACGTTTT CGT AAAACGTTTGC-C TAAATAAAAATAAAG TERM 953 795456 - 795430 - f 83 -11 -3.09787 | opp_overlap 795436, overlap 795429 TTAAATCATAGAAAG TGCAAACGTTTT CGT AAAACGTTTGCC TAAATAAAAATAAAG SPH_0859 795481 - 797661 + | pts system, IIBC component TERM 954 797669 - 797694 + F 100 -12 -4.17048 | opp_overlap 797666 AATTGTAATATACTT GAGGTTGGAA GCTGTA TTCCAACCTC TTATTTTGGGAGAAA SPH_0860 797713 - 798528 + | metal-dependent hydrolase TERM 955 798541 - 798564 + F 77 -6 -4.71426 | opp_overlap 798541 798539 TAATAACTGAAAAGA GGTTGGAACT ATAA AATTCCAGCC TTTTCTTACTAGAGA TERM 956 799847 - 799835 - g 76 -3.4 -5.25803 | AACCGTGAGAAAAAA CAAG ATAAA CTTG ATATCGAAATGATTG SPH_0861 798668 - 800011 + | ATP-dependent RNA helicase TERM 957 800020 - 800040 + F 88 -7.6 -5.04601 | opp_overlap 800019 ATTTTAATAGAAATT GTTGGAGT ATTGA GCTCCAAC TTTTTGCTTTATGAG metK 800226 - 801416 + | methionine adenosyltransferase TERM 958 801425 - 801441 + F 95 -8.7 -5.47914 | opp_overlap 801427 AAAATAAGATTTTAA GAGGGGA ACG TCCTCTC TTTTTTATAGTTTTT SPH_0863 801969 - 802904 + | dihydroorotate dehydrogenase holA 802938 - 803975 + | DNA polymerase III, delta subunit TERM 959 803994 - 804020 + F 100 -10.8 -4.30833 | opp_overlap 803994 TTGTTGAAACTACAA CCCGCGTCAGGA TTA TCTTGTCGTGGG TTTCTTGCTGATTTG TERM 960 804634 - 804619 - g 76 -3.2 -5.1925 | TCAGAAGGTAAAAAA CCAATC TTGG GCTTGG ACGTTTGGGAACATG SPH_0865 804148 - 804753 + | superoxide dismutase [Mn] (general stress protein 24)(GSP24) TERM 961 804765 - 804783 + F 90 -8.2 -5.1925 | ATAATGATAGTTGGA GGGAAGAA TTG TTCTTCTC TTTTTTAGGTTATAA TERM 962 804806 - 804825 + F 82 -4.3 -5.56112 | opp_overlap 804799 804819 GGTTATAAGATTCTG GTCTGAC AAAATC GTTAGAC TTTTTTCATTTTTAT SPH_0866 804910 - 805440 + | transcriptional regulator SPH_0867 805461 - 806546 + | radical SAM protein TERM 963 806660 - 806687 + G 87 -4.8 -5.48213 | GTGGGAGTGGGAACT CCAGGTATTCAG CATC TTGGACGCCTGG TTTTTCTTTTGACTC SPH_0868 806546 - 807028 + | VanZ family protein TERM 964 808503 - 808520 + G 70 -5.5 -4.4017 | GGATCTATCCTTATG GTCTGCC ACGA GCCAGAC TTTTATGAAGGTTGG SPH_0869 807030 - 808571 + | ABC transporter, ATP-binding protein TERM 965 808614 - 808590 - T 80 -6.5 -4.75288 | opp_overlap 808582 808590 TGAGAGTAAAAGAAA TACAGTACCGA ATG TGGATACTGTA TTTTTTTGGTTTTTA TERM 966 808590 - 808614 + T 91 -4.4 -5.85011 | gap 1, opp_overlap 808590, overlap 808582 TGAGAGTAAAAGAAA TACAGTA-CCG AATG TGGATACTGTA TTTTTTTGGTTTTTA SPH_0870 809430 - 808627 - | peptidyl-prolyl cis-trans isomerase SPH_0871 809734 - 809513 - | hypothetical protein TERM 967 809732 - 809719 - G 74 -3.8 -5.0538 | TGCCATTGTAAAAAA GTCC ATAGAA GGAC ATGAAAGTGACCAGC TERM 968 810051 - 810076 + r 100 -10.5 -5.25656 | opp_overlap 810051 ACACAGCATTTACAA CACTTCATGGT TCAC ACCATGGGGTG TTTTTTAATGATTTT SPH_0872 810422 - 810213 - | hypothetical protein rpsP 810592 - 810864 + | ribosomal protein S16 SPH_0874 810884 - 811123 + | hypothetical protein TERM 969 811129 - 811146 + F 100 -9.1 -5.37043 | opp_overlap 811128 CGAAAAATAAGAAGG GCGGGAC GGAT GTCTCGC TTTTTTGTGTGGAAT SPH_0875 811700 - 812488 + | alpha/beta fold family hydrolase TERM 970 812737 - 812723 - g 71 -7.2 -3.87551 | overlap 812736 ATTATTAAATTCAAA GATATG TAC CATATC AATACTATCGAAAAG rimM 812519 - 813037 + | 16S rRNA processing protein RimM TERM 971 813178 - 813155 - g 76 -7.4 -4.19879 | AGAAAATGCTGAAAA GGCCCGTCAT GTAG ATGATGAGCC CTACGGAGGCGGTCA trmD 813027 - 813746 + | tRNA (guanine-N1)-methyltransferase SPH_0878 813758 - 814096 + | oxygen-sensitive ribonucleoside-triphosphate reductase TERM 972 814094 - 814140 + T 79 -5.2 -5.20328 | opp_overlap 814103, overlap 814103 TTTGAACAAATTCGC TAAGAAAAAGAGTGGGATGAAG CAA CTACATCTCACTCTTTCTTAAA TTTATTTTTTTGGGC TERM 973 814103 - 814131 + T 100 -12.5 -4.31837 | opp_overlap 814103, overlap 814094 ATTCGCTAAGAAAAA GAGTGGGATGAAG CAA CTACATCTCACTC TTTCTTAAATTTATT TERM 974 814131 - 814103 - T 100 -10.3 -5.06816 | opp_overlap 814094 814103 ATTCGCTAAGAAAAA GAGTGGGATGAAG CAA CTACATCTCACTC TTTCTTAAATTTATT SPH_0879 814446 - 814126 - | hypothetical protein TERM 975 814514 - 814484 - H 71 -5.6 -4.61147 | overlap 814486 CAATATTATATAAAA TTTTCCTAAAATCT ACA AGATTTTACGAATA AACTAATGAAACTAA SPH_0881 814544 - 814759 + | hypothetical protein SPH_0880 814902 - 814756 - | chlorohydrolase TERM 976 814817 - 814829 + g 70 -7.7 -3.72695 | CCGTATGTATGGTTA CTGAC TTC GTCAG TTTCATCCACAACCT TERM 977 814861 - 814843 - G 72 -10.4 -2.61383 | overlap 814842 AGTTTCATCCACAAC CTCAAAAC AGT GTTTTGAG CAGCCTGCGGCTAGC TERM 978 814958 - 814930 - R 93 -5.3 -6.09196 | opp_overlap 814930 TTCAAAATAAAAAAA GGATATTGAGTCA TGA TAACTCGGTATCC TTTTTTAGTTAGTAA TERM 979 814930 - 814958 + r 89 -7.5 -5.30155 | opp_overlap 814930 TTCAAAATAAAAAAA GGATATTGAGTCA TGA TAACTCGGTATCC TTTTTTAGTTAGTAA SPH_0882 815499 - 814963 - | biotin synthase TERM 980 815203 - 815172 - G 70 -3 -5.06414 | GGTTTGCAAGAAAAA TCTTAACAACACCA CTCT TGCTGTTGGTTAGA GAGGAAGTAAGTCCA gor 817042 - 815696 - | glutathione-disulfide reductase TERM 981 817433 - 817448 + G 71 -7.6 -3.9461 | opp_overlap 817433 CAGACTGCTCTAAAA GATGAG CCTA CTCATC TTGTTGTTGCCAAGG TERM 982 817448 - 817433 - g 73 -7.6 -4.09243 | opp_overlap 817433 CAGACTGCTCTAAAA GATGAG CCTA CTCATC TTGTTGTTGCCAAGG SPH_0884 817307 - 818506 + | membrane-fusion protein TERM 983 819087 - 819076 - g 76 -4.4 -5.05712 | ATAAAGAAGGAAAAA CCAT TATC ATGG TAACGCATGAGCCTG SPH_0885 818490 - 819191 + | macrolide export ATP-binding/permease protein MacB SPH_0886 819193 - 820452 + | peptide ABC transporter permease TERM 984 820482 - 820459 - f 70 -8.2 -3.33361 | opp_overlap 820459, overlap 820462 TATGAATGAGATCAA CAAGATGGAC ACTC GTCTATCTTG TTTTTGTATGGATTT TERM 985 820459 - 820482 + F 100 -10.4 -5.01546 | opp_overlap 820459 820462 TATGAATGAGATCAA CAAGATGGAC ACTC GTCTATCTTG TTTTTGTATGGATTT metG 820576 - 822573 + | methionyl-tRNA synthetase TERM 986 822581 - 822604 + T 90 -8.2 -5.18561 | opp_overlap 822581 822583 TTGGGTAAAAGTAGA CAGGACTAGT TCAG GCTAGTTCTG TTTTTTGGCTCTTTG TERM 987 822655 - 822677 + T 82 -5.6 -5.27779 | AAAAGCTAAGCTCGA GAAAGGACAA ATT TCGTTCTTTC TTTTTTGATATTCAG SPH_0888 823901 - 822645 - | transposase TERM 988 823044 - 823063 + g 70 -9.4 -2.64981 | opp_overlap 823042 CATGCGAAAAGTAGG GCGATAAA AACG TTTATCGC TGAGTTTACGACTAT TERM 989 823974 - 824027 + H 100 -8.4 -6.02919 | gap 1, opp_overlap 823974 823976, overlap 823976 TTTTCTACACAAAAA TAGGCTCCATAATATCTATAG-GGG ATTTA CCCACTACAAATATTATAGAGCCTG TTTTTTTATTTATAC TERM 990 824027 - 823974 - H 100 -12.8 -4.96848 | gap 1, opp_overlap 823974 823976, overlap 823976 TTTTCTACACAAAAA TAGGCTCCATAATATCTATAG-GGG ATTTA CCCACTACAAATATTATAGAGCCTG TTTTTTTATTTATAC TERM 991 823976 - 824025 + H 89 -8.8 -4.6372 | gap 1, opp_overlap 823974 823976, overlap 823974 TTCTACACAAAAATA GGCTCCATAATATCTATAG-GGG ATTTA CCCACTACAAATATTATAGAGCC TGTTTTTTTATTTAT TERM 992 824025 - 823976 - H 100 -15.4 -4.11141 | gap 1, opp_overlap 823976 823974, overlap 823974 TTCTACACAAAAATA GGCTCCATAATATCTATAG-GGG ATTTA CCCACTACAAATATTATAGAGCC TGTTTTTTTATTTAT TERM 993 824087 - 824105 + G 72 -10.4 -2.61383 | overlap 824086 GCTAGCCGCAGGTTG CTCAAAAC ACA GTTTTGAG GTTGTAGATGAAACT TERM 994 824131 - 824119 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAACATGTTTT TERM 995 824176 - 824164 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAACACAGTTT TERM 996 824177 - 824195 + G 72 -10.4 -2.61383 | opp_overlap 824176, overlap 824176 AACTGACGAAGTCAG CTCAAAAC ACA GTTTTGAG GTTGTAGATGAAACT TERM 997 824221 - 824209 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG TAACCATACATACGG SPH_0889 824046 - 824282 + | chlorohydrolase SPH_0890 824372 - 824692 + | PadR family transcriptional regulator SPH_0891 824696 - 825511 + | hypothetical protein TERM 998 825513 - 825540 + GF 81 -10 -3.40403 | opp_overlap 825520, overlap 825520 GGAGTGAAGTATAGT CAAAAAGCCGTT GCAA AGCGGTTTTTTG TTATAATGAAGGGAA TERM 999 825520 - 825533 + GF 89 -4.5 -5.58179 | opp_overlap 825520, overlap 825513 AGTATAGTCAAAAAG CCGTT GCAA AGCGG TTTTTTGTTATAATG SPH_0892 825501 - 825614 + | hypothetical protein SPH_0893 825586 - 826512 + | oxidoreductase, aldo/keto reductase family protein TERM 1000 826548 - 826561 + F 91 -4.5 -5.89921 | opp_overlap 826548 ATCACAGTCAAAAAG CCGTT TTAA AGCGG TTTTTTTGTTATAAT SPH_0894 826612 - 826848 + | hypothetical protein TERM 1001 826944 - 826975 + G 77 -6 -4.56775 | gap 1, opp_overlap 826943 826952, overlap 826953 ATGGAGTTGACCAAG GTGAAAAGCCACTCT TAG AGGGTGA-TTTTCAC TTTTTACAGAGAGAT SPH_0895 826841 - 827539 + | 3-ketoacyl-(acyl-carrier-protein) reductase SPH_0896 827550 - 828050 + | MutT/nudix family protein SPH_0897 828028 - 828897 + | PEP-utilizing enzyme family protein SPH_0898 828872 - 829312 + | hypothetical protein SPH_0899 829435 - 831981 + | aminopeptidase N TERM 1002 832005 - 832038 + F 84 -4 -5.75342 | gap 1 AAAATAAAAAGAAAA CTCAGCTATCT-CAT GTAAA ATGCAGAGAGTTGAG TTTTTTTTAAGGCAA TERM 1003 832128 - 832146 + G 77 -6.1 -4.61527 | GGATGACCTAGGTCT GTCAAAT TCAGT ATTTGAC TTTTTAGACGATTTT SPH_0900 832090 - 832764 + | transcriptional regulatory protein CiaR SPH_0901 832754 - 834088 + | sensor protein CiaH TERM 1004 834119 - 834086 - T 91 -5.3 -5.93252 | opp_overlap 834092, overlap 834092 TCTAAAAAGAAAAAA TAAAAATATCGCTCC AATT GGGGCGATATTTTGG ATCTATCTTCTACGT TERM 1005 834092 - 834113 + T 100 -10.9 -4.27861 | opp_overlap 834086 834092 AAGAAAAAATAAAAA TATCGCTCC AATT GGGGCGATA TTTTGGATCTATCTT TERM 1006 834113 - 834092 - T 100 -8.7 -5.84011 | opp_overlap 834092, overlap 834086 AAGAAAAAATAAAAA TATCGCTCC AATT GGGGCGATA TTTTGGATCTATCTT SPH_0902 834409 - 834122 - | hypothetical protein SPH_0903 834549 - 835478 + | protease TERM 1007 835492 - 835527 + F 88 -7.8 -4.97461 | gap 1 AAAATACATGATTCG TTGAGAGAAGGAA-GAT GCA AACATTTCTTCTCTCAA TTTTTCGTATTTCTT TERM 1008 835641 - 835654 + F 84 -3.7 -5.59357 | ATCCTATGTTTGCAG GTGCC AAAT GGCCC TTTTTTTGGTATAAT TERM 1009 835697 - 835685 - g 77 -6.3 -4.48987 | opp_overlap 835684 835685 TTTTTATAATGAAAA CGATT GGT AATCG CTATGTTGTGGTGGA SPH_0904 835678 - 838128 + | DnaQ family exonuclease/DinG family helicase TERM 1010 838597 - 838608 + G 73 -2.2 -5.28166 | GAATGGAGACGCACG GTTC CGCT GGAC TTTTTGTTAATTTTC SPH_0905 838138 - 839388 + | RodA SPH_0906 839399 - 839953 + | 4-methyl-5 TERM 1011 839956 - 839972 + F 84 -5.8 -5.36441 | opp_overlap 839951 839956 TAAAAATCAGTAAAA CGGGAG TTATT CTCTCG TTTTTTATGTGGAAA SPH_0907 840038 - 840601 + | phosphoglycolate phosphatase TERM 1012 840904 - 840893 - g 81 -5.8 -5.17353 | opp_overlap 840892 ATATTCAGGAAAAAA CAGG CCGT CCTG CTGTTGAGACCGTCT gyrB 840616 - 842562 + | DNA gyrase, B subunit ezrA 842644 - 844371 + | septation ring formation regulator EzrA TERM 1013 844419 - 844377 - f 76 -6.6 -4.63218 | opp_overlap 844377 TCGTTTTTAATAAAA GAAAAAGATTTTATTGTG TGAGGAG CAGAATCAAATCTTTTTC TATAGTTGTGGGGAG TERM 1014 844698 - 844739 + F 100 -9.7 -4.57581 | gap 1, opp_overlap 844698 AAGTCTATTGAAAAA TCTCCAGACTAGAGAACT CACGGAT AGTTC-CTAATCTGGAGA TTTCTTATTTGCACT TERM 1015 844739 - 844698 - f 100 -11.9 -4.67011 | gap 1, opp_overlap 844698 AAGTCTATTGAAAAA TCTCCAGACTAGAGAACT CACGGAT AGTTC-CTAATCTGGAGA TTTCTTATTTGCACT SPH_0910 845358 - 845624 + | transposase TERM 1016 846185 - 846152 - T 90 -8.3 -4.93898 | opp_overlap 846156, overlap 846156 AGATGAGTATAAAAA GAAAGTCCTCATTTC AATA GAAATCACGACTTTC TGATGGATTTATTTT SPH_0913 846515 - 846165 - | transposase TERM 1017 846740 - 846772 + r 100 -10 -4.69549 | ATTAATTTATCCGAA GGATTTAGTTCTGT ATTGC ACAGGGCTAAGTCC TTTTAGTTTTACCTT SPH_0916 848081 - 847545 - | transposase TERM 1018 848129 - 848089 - R 100 -9.2 -4.78839 | overlap 848091 AATTTCATAATAAAA CACCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTAGGGGG CAGTTCATTTCGGCA TERM 1019 848127 - 848091 - R 93 -10.4 -4.00512 | overlap 848089 TTTCATAATAAAACA CCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTAGGG GGCAGTTCATTTCGG SPH_0917 848516 - 848217 - | hypothetical protein SPH_0918 849136 - 848681 - | MutT/nudix family protein TERM 1020 849017 - 849036 + g 72 -3.6 -5.05606 | opp_overlap 849009 849006 849005 849031, overlap 849005 849019 GAACCAAGCACCATT TGGTTCTT GAAC AAGAACAA TTTGTTTTTGTTCAG TERM 1021 849981 - 850037 + r 80 -9.1 -3.66055 | gap 1, opp_overlap 849986, overlap 849986 849989 ACATGGGTTCATATC AAAAAGAACCTCA-AAAAGGTATTAC CAAGTT GCAATACCTTTTATGAGGCTCTTTTG TCTTGTTCTTGTTTC TERM 1022 850032 - 849986 - R 100 -13.4 -4.8048 | gap 1, opp_overlap 849986 849981 849989 GGTTCATATCAAAAA GAACCTCA-AAAAGGTATTAC CAAGTT GCAATACCTTTTATGAGGCTC TTTTGTCTTGTTCTT TERM 1023 849986 - 850032 + r 95 -9 -4.83518 | gap 1, opp_overlap 849986, overlap 849981 849989 GGTTCATATCAAAAA GAACCTCA-AAAAGGTATTAC CAAGTT GCAATACCTTTTATGAGGCTC TTTTGTCTTGTTCTT TERM 1024 849989 - 850029 + r 74 -9.3 -2.98651 | gap 1, opp_overlap 849986, overlap 849986 849981 TCATATCAAAAAGAA CCTCA-AAAAGGTATTAC CAAGTT GCAATACCTTTTATGAGG CTCTTTTGTCTTGTT TERM 1025 850251 - 850224 - R 84 -5.7 -5.52986 | opp_overlap 850249 ATTTTAGTAAAAAAA GAAGCAGAAAA ATTTCA TTTTCTACTCC TTTTCTATAGGATTT TERM 1026 850249 - 850263 + r 72 -2.8 -5.21459 | opp_overlap 850224 AATTTCATTTTCTAC TCCTTT TCT ATAGGA TTTATTTTTCTTTTT SPH_0920 852523 - 850265 - | negative regulator of genetic competence ClpC/mecB TERM 1027 851302 - 851312 + g 79 -3.2 -5.49568 | TGATAGGAGTATCCT GGTC TGT GATC TTTTTCTTTTGCATT TERM 1028 852434 - 852447 + g 83 -5.3 -5.18409 | AATCTTATAGCAGTT TTGAC AGAG GTCAA TTTGTTTTTGTTTTC TERM 1029 852710 - 852688 - R 93 -7.8 -5.67063 | opp_overlap 852688 TGGACTATAAAAAAA TCCTATTTGT GAG ACAAAAAGGA TTTTACTTAGACATG TERM 1030 852688 - 852710 + r 81 -7.8 -4.41494 | opp_overlap 852688 TGGACTATAAAAAAA TCCTATTTGT GAG ACAAAAAGGA TTTTACTTAGACATG TERM 1031 852722 - 852744 + r 81 -7.6 -4.30014 | opp_overlap 852724, overlap 852725 AGGATTTTACTTAGA CATGCAGGGA CAA TCCCAGCTTG TTTTAGATTAGTAGA TERM 1032 852725 - 852741 + r 78 -7.9 -4.26461 | opp_overlap 852724, overlap 852722 ATTTTACTTAGACAT GCAGGGA CAA TCCCAGC TTGTTTTAGATTAGT SPH_0921 852982 - 852752 - | hypothetical protein TERM 1033 853125 - 853108 - H 70 -2.1 -5.28826 | opp_overlap 853101, overlap 853109 AAATTGGATAAAAAA TTTAAAT TTTA ATTCAAA ACATGTTATAATCAT SPH_0922 853172 - 853855 + | amino acid ABC transporter, permease protein SPH_0923 853855 - 854589 + | glutamine transport ATP-binding protein GlnQ SPH_0924 854722 - 855600 + | bifunctional protein FolD TERM 1034 855691 - 855706 + F 74 -3.2 -5.25699 | TATAAGATTACAAAA GGAGGT CTGC GTCTCC TTTTTATTGTATAAT SPH_0925 855742 - 856614 + | putative YjeF homolog, C-terminus rpiA 856896 - 857579 + | ribose 5-phosphate isomerase A deoB 857593 - 858804 + | phosphopentomutase SPH_0928 858806 - 859348 + | hypothetical protein SPH_0929 859364 - 860173 + | purine nucleoside phosphorylase I, inosine and guanosine-specific TERM 1035 860723 - 860707 - g 90 -10.9 -4.208 | overlap 860720 CTCCAAAACTAGAAA CTCCTCT TAG AGAGGAG CCAAGACTAGCTCCT SPH_0930 860649 - 861044 + | hypothetical protein SPH_0931 861054 - 861629 + | hypothetical protein SPH_0932 861687 - 862076 + | hypothetical protein TERM 1036 862244 - 862210 - f 78 -7.2 -4.32177 | opp_overlap 862212, overlap 862213 CTAGTTTATAAGAAA GTACTACCTGAGCT TGAATAG AACTCAGGTAGCTC TCTGTGAAAGAACAA TERM 1037 862241 - 862213 - f 79 -9.7 -3.15008 | opp_overlap 862212, overlap 862210 GTTTATAAGAAAGTA CTACCTGAGCT TGAATAG AACTCAGGTAG CTCTCTGTGAAAGAA TERM 1038 862312 - 862332 + G 70 -8.3 -3.35996 | overlap 862313 AACTAGCCGCAGGTT GCTCAAAGC ACT GCTTTGAGG TTGTAGATAAGACTG TERM 1039 862313 - 862331 + G 81 -11.8 -2.61383 | overlap 862312 ACTAGCCGCAGGTTG CTCAAAGC ACT GCTTTGAG GTTGTAGATAAGACT TERM 1040 862359 - 862343 - g 82 -10.9 -3.48924 | opp_overlap 862340 TGAGGTTGTAGATAA GACTGAC GAA GTCAGTC ACATATATAATCCAA SPH_0933 862272 - 862385 + | hypothetical protein TERM 1041 863266 - 863276 + G 73 -5.4 -4.52047 | TGGTATGACTACTCA CGTT GGG AACG TTTTGTCATCTGATG deoD 862820 - 863530 + | purine nucleoside phosphorylase SPH_0935 864077 - 863553 - | topology modulation protein TERM 1042 864125 - 864110 - R 80 -2.5 -5.71712 | TTGGAGACAAAAAAA CAGCC TCTATG GACTG TTTCTTATTTAGCAA rpsT 864366 - 864130 - | ribosomal protein S20 TERM 1043 864257 - 864267 + g 70 -5.4 -4.38712 | TCTTCAGATGGGTTT GCTT CGA AAGC TTTTATAGCAGTACG coaA 865354 - 864434 - | pantothenate kinase SPH_0938 865552 - 865956 + | hypothetical protein TERM 1044 866051 - 866103 + G 72 -4.3 -4.81863 | overlap 866052 ATTATTTATAAGTGT TGAAAGAGATTGAAGAAAATGGCTT CGT GACTCGCTTTCTTCGGTCTTTTTCG TTTTATTATCAATTT SPH_0939 866047 - 866166 + | hypothetical protein TERM 1045 866286 - 866304 + G 75 -10.4 -3.15078 | opp_overlap 866286 866285 866284, overlap 866285 TTTAGCAAGAAAATG GTTGACTT TGG AAGTCAAC TCTTGCTCAAGTGTC TERM 1046 866304 - 866286 - g 72 -10.4 -2.64942 | opp_overlap 866285 866286, overlap 866285 866284 TTTAGCAAGAAAATG GTTGACTT TGG AAGTCAAC TCTTGCTCAAGTGTC SPH_0940 866172 - 866753 + | methyltransferase small subunit TERM 1047 866837 - 866853 + G 75 -9.5 -3.35934 | ATAGAAGGCTATGTA TCAGGAA CTG TTCCTGA TTATCAGATGTCTGC SPH_0941 866750 - 868027 + | pyrimidine-nucleoside phosphorylase (pynp) deoC 868047 - 868709 + | deoxyribose-phosphate aldolase TERM 1048 869036 - 869026 - g 70 -5.4 -4.45168 | overlap 869027 GTCGCAAAAGATAAA TCGA CGG TCGA GATGACGGTCGGGGA cdd 868696 - 869085 + | cytidine deaminase SPH_0944 869175 - 870227 + | lipoprotein TERM 1049 870252 - 870266 + F 100 -12.8 -5.055 | opp_overlap 870252 GTCATTTCTTAGGAA GCGGCC AAG GGCCGC TTTTTTAAGAGTTGA TERM 1050 870266 - 870252 - f 91 -12.8 -3.14931 | opp_overlap 870252 GTCATTTCTTAGGAA GCGGCC AAG GGCCGC TTTTTTAAGAGTTGA TERM 1051 871614 - 871604 - g 85 -5.4 -5.24551 | GGAAATCAACAAAAA GCAA TTA TTGC TCGTGAAATTGATCG SPH_0945 870371 - 871906 + | ribose import ATP-binding protein RbsA TERM 1052 872110 - 872122 + G 70 -5.5 -4.44046 | TTGGTTTTGCGGTTG CCAGT CGA GCTGG TTTCTTTAACGTCGG SPH_0946 871899 - 872957 + | ABC transporter membrane-spanning permease - ribose/galactose transport SPH_0947 872960 - 873916 + | ABC transporter membrane-spanning permease - ribose/galactose transport TERM 1053 873952 - 873992 + F 100 -12.8 -5.18726 | opp_overlap 873931 873949, overlap 873954 CCAATGACTGAACTG CCCCCCAAAAGTTAGA CAGAAAAAA TCTAACTTTTGGGGTG TTTTTATTATGAAAC TERM 1054 873954 - 873990 + F 100 -14 -4.22377 | opp_overlap 873949, overlap 873952 AATGACTGAACTGCC CCCCAAAAGTTAGA CAGAAAAAA TCTAACTTTTGGGG TGTTTTTATTATGAA TERM 1055 875340 - 875308 - g 93 -10 -4.69549 | AAGGTAAAACTAAAA GGACTTAGCCCTGT GCAAT ACAGAACTAAATCC TTCGGATAAATTAAT SPH_0950 874516 - 875349 + | integrase core subunit TERM 1056 875372 - 875391 + T 86 -5.8 -5.42198 | gap 1 GTCTAACTTTTGGGG TG-CAGTTC ACA GAACTGGCA TTTTATTTTTTAGGA SPH_0951 876035 - 875394 - | hypothetical protein TERM 1057 876082 - 876068 - H 100 -10 -4.88405 | overlap 876071 AATTGGGAAAGAAAA GCAGAG AAT CTCTGC TGAAATTGTCACATC TERM 1058 876705 - 876679 - g 89 -10.2 -4.19953 | CACCCAAGTCTAAAA CAGGCACCAAAG TTA CTTTTATGCCTG ACGCGACTATCTTTT parE 876171 - 878114 + | DNA topoisomerase IV, B subunit SPH_0953 878235 - 878360 + | hypothetical protein TERM 1059 879860 - 879848 - g 70 -7.7 -3.71848 | opp_overlap 879857 GTCTTGCAGGAAGAA GAAGC AGA GCTTC GTGAGAAGATTGCTA parC 878525 - 881005 + | DNA topoisomerase IV, A subunit TERM 1060 881019 - 881035 + F 77 -5.1 -5.06414 | opp_overlap 881020, overlap 881020 AAGTGAAATGAAGAA TCAGTTC TAA GAGCTGG TTTTTATTGGAGAAA ilvE 881137 - 882159 + | branched-chain amino acid aminotransferase TERM 1061 882879 - 882869 - g 93 -5.4 -5.61881 | TGGCAAAAAGAAAAA TTGG AAT CCAA TAGCAAATACCAAAA SPH_0956 882215 - 882919 + | hypothetical protein SPH_0957 882984 - 883673 + | permease TERM 1062 883776 - 883764 - g 71 -4.1 -4.84918 | overlap 883768 GTTATAAAGATAAAA CAAAC CCA GTTCG ACTTGGGACATCTGC TERM 1063 883782 - 883768 - g 71 -4.2 -4.91778 | overlap 883764 TAAAGATAAAACAAA CCCAGT TCG ACTTGG GACATCTGCATTTTG SPH_0958 883670 - 884593 + | permease pcp 884608 - 885252 + | pyroglutamyl-peptidase I TERM 1064 885359 - 885332 - f 100 -12.2 -4.52589 | opp_overlap 885332 GTTGTTTACATAAAA CTCTATATCAGA GAAG CCTGATATAGAG TTTTTTCTTGCTAGT TERM 1065 885332 - 885359 + F 100 -11.5 -5.52023 | opp_overlap 885332 GTTGTTTACATAAAA CTCTATATCAG AGAAGC CTGATATAGAG TTTTTTCTTGCTAGT SPH_0960 885420 - 885650 + | hypothetical protein TERM 1066 887124 - 887114 - g 76 -2.4 -5.51353 | CAAAAAGAAGAAAAA CGTG CTG CTCG TCCACGTCGTCCAAG SPH_0963 886022 - 887224 + | putative 30S ribosomal protein S1-like protein TERM 1067 887268 - 887246 - f 82 -7.8 -4.54477 | opp_overlap 887241 887246, overlap 887241 TGAAAATTCACAAAA TCCTTTGTTT ACT AAACAAGGGA TTTTTCTGGCTCTTT TERM 1068 887246 - 887268 + F 100 -10 -4.92363 | opp_overlap 887241 887246, overlap 887241 TGAAAATTCACAAAA TCCTTTGTTT ACT AAACAAGGGA TTTTTCTGGCTCTTT TERM 1069 887319 - 887341 + F 100 -9.2 -5.27779 | opp_overlap 887323 GTCAGCTAAGCTTGA GAAAGGACAA ATT TCGTCCTTTC TTTTTTGATGTTCAA TERM 1070 887916 - 887902 - f 77 -8.6 -3.6502 | opp_overlap 887902 CATTCGGGAGTGAAA CAGTCT GGG AGACTG TTTCAGCCTGAGCCT TERM 1071 887902 - 887916 + F 77 -8.6 -3.57263 | opp_overlap 887902 CATTCGGGAGTGAAA CAGTCT GGG AGACTG TTTCAGCCTGAGCCT TERM 1072 888761 - 888708 - f 100 -13.5 -4.96848 | opp_overlap 888720, overlap 888710 TTTTCTACACAAAAA TAGGCTCCATAATATCTATAGTGGA TTTA CCCACTACAAATATTATAGAGTCCA AAATCCTTTGTTTAC TERM 1073 888759 - 888710 - f 100 -13.9 -4.11141 | opp_overlap 888720, overlap 888708 TTCTACACAAAAATA GGCTCCATAATATCTATAGTGGA TTTA CCCACTACAAATATTATAGAGTC CAAAATCCTTTGTTT TERM 1074 888787 - 888765 - f 78 -7.8 -4.18401 | opp_overlap 888765 888781 TTATAGAGTCCAAAA TCCTTTGTTT ACT AAACAAGGGA TTTTTCTTTTGTCTC TERM 1075 888765 - 888787 + F 100 -10 -5.58522 | opp_overlap 888765, overlap 888781 TTATAGAGTCCAAAA TCCTTTGTTT ACT AAACAAGGGA TTTTTCTTTTGTCTC SPH_0967 888829 - 889326 + | GAF domain-containing protein SPH_0968 889326 - 890981 + | DNA polymerase III subunit gamma/tau TERM 1076 891087 - 891107 + G 76 -7.5 -4.14013 | opp_overlap 891075, overlap 891105 GAAGCCTGGATGACT GGCCGCTAT ATT ATGGCAGCC TTTTGGGCAATTTTA SPH_0969 891081 - 891203 + | hypothetical protein TERM 1077 891239 - 891229 - f 74 -6.8 -4.30161 | opp_overlap 891229, overlap 891224 CCAGACAAAATCAAA GCCT TTT AGGC TTTTTTTGTTATACT TERM 1078 891229 - 891239 + F 95 -6.8 -5.89921 | opp_overlap 891229 891224 CCAGACAAAATCAAA GCCT TTT AGGC TTTTTTTGTTATACT sufC 891352 - 892122 + | FeS assembly ATPase SufC sufD 892150 - 893412 + | FeS assembly protein SufD TERM 1079 894047 - 894067 + G 83 -7.5 -4.7416 | CATATGAAGATTGAT GTCCAGGAC TTG GATCTGGAC TTTTTCGCCTTTTCG SPH_0972 893423 - 894649 + | cysteine desulfurase SPH_0973 894636 - 895076 + | NifU family SUF system FeS assembly protein TERM 1080 895098 - 895071 - f 70 -2.2 -5.28166 | gap 1, opp_overlap 895074 895077, overlap 895074 895077 GAAAATCAAGAAAAA CAGTAAGACAA GTTTCTT TTGTCTTA-TG AATTATTAGAAATGA sufB 895130 - 896542 + | FeS assembly protein SufB TERM 1081 896612 - 896624 + G 73 -7.7 -3.83205 | CCGTATGTATGGTTA CTGAC TTC GTCAG TTTCATCTACAACCT TERM 1082 896656 - 896638 - g 72 -10.4 -2.61383 | overlap 896637 AGTTTCATCTACAAC CTCAAAAC AGT GTTTTGAG CAACCTGCGGCTAGC TERM 1083 896684 - 896722 + G 93 -12.8 -4.11394 | AGCTTCCTAGTTTGT TCTTTGATTTTGAGTA TTAGATT TACTCAAAATCAAGGA TTTTGAAGATGAACT SPH_0975 896546 - 896728 + | hypothetical protein TERM 1084 896740 - 896777 + T 84 -11.7 -3.02946 | gap 1, opp_overlap 896750, overlap 896750 TTGAAGATGAACTTG TATCAAAAAATCGCGGTT TAA AATCGCGATTTTTT-ATA ATTTCTCGTTAACAA TERM 1085 896768 - 896750 - T 88 -7.4 -5.14965 | opp_overlap 896750 896740 ACTTGTATCAAAAAA TCGCGGTT TAA AATCGCGA TTTTTTATAATTTCT TERM 1086 896750 - 896768 + T 100 -9.6 -5.43621 | opp_overlap 896750, overlap 896740 ACTTGTATCAAAAAA TCGCGGTT TAA AATCGCGA TTTTTTATAATTTCT SPH_0976 898014 - 896773 - | penicillin-binding protein 3 TERM 1087 896986 - 897023 + g 100 -16.6 -3.09193 | opp_overlap 896991, overlap 896991 GGAATCAGGTGTGAA TTGAACAGATTGGGAA GATTGA TTCCCAATCTGTTCGA TTAGATAGATATCCT TERM 1088 897018 - 896991 - G 91 -12.9 -3.17392 | opp_overlap 896991 896986 CAGGTGTGAATTGAA CAGATTGGGAA GATTGA TTCCCAATCTG TTCGATTAGATAGAT TERM 1089 896991 - 897018 + g 91 -12.9 -3.19371 | opp_overlap 896991, overlap 896986 CAGGTGTGAATTGAA CAGATTGGGAA GATTGA TTCCCAATCTG TTCGATTAGATAGAT TERM 1090 897687 - 897669 - G 81 -11.8 -2.71268 | opp_overlap 897671, overlap 897666 897671 TGGCACTAGATACCA GAGTTGCT TCA AGCAACTC TTCGACAGTATAATT TERM 1091 897878 - 897890 + g 71 -6.3 -4.15543 | GGTTGCGTTGCATCC TTCTC ATA GAGAA TTTTACCAGTATTTG TERM 1092 898419 - 898444 + G 79 -8.5 -3.9712 | GATTAATCAGTTATC TAGTTTGATTA TATC TAGTCAAACTA TTTATAGTCGAGTAC TERM 1093 898721 - 898737 + G 73 -8.7 -3.64283 | TTCTAAAGAGGGATC GCTTGCA TAT TGCAGGC TTATTAAAGAATTTA SPH_0977 898195 - 899226 + | membrane protein TERM 1094 899230 - 899244 + F 82 -5.7 -5.33405 | opp_overlap 899229 899230 TTAGCTAAGTAAAAG TCAGG AGAAC CCTGA TTTTTCTTTACTGGA TERM 1095 899392 - 899358 - f 70 -2.2 -5.30575 | opp_overlap 899358 TAAAAATCGAAAAAA CCAGTGGAATTC TGTGTCAGGGT AAGTTCCACTGG TTTTCATAGTCTATT TERM 1096 900141 - 900156 + F 93 -4.7 -5.98675 | opp_overlap 900141 CATTCCTTGGTAAAA CGTTG TTAAAT CAACG TTTTTTATTTTTATC TERM 1097 900268 - 900247 - f 93 -7.3 -5.43487 | AAAGGATAGAAAAAA GGATACAAC ATTT GTCGCATCC TAAAAATAATCTTTT SPH_0979 900538 - 901278 + | transcriptional repressor of the fructose operon TERM 1098 901721 - 901746 + G 72 -10.5 -2.72036 | gap 1, overlap 901719 TAAGGATTTGATTTC CTTGACGCGCCA GAC TGGTGCG-CAAG TGGTCTGTGACTTTG pfkB 901275 - 902186 + | 1-phosphofructokinase TERM 1099 902410 - 902392 - g 72 -4.5 -4.8048 | opp_overlap 902397 GCCTCACAGCAAAAA CGCTGCT GTCAA AGAAGCG ACAGTTCTATTTGCT SPH_0981 902183 - 904135 + | PTS system, fructose family, IIC subunit TERM 1100 904154 - 904175 + F 77 -5.1 -5.0916 | opp_overlap 904149 904154 904157 ATAGAAAAATGAAAA GATTGGACC GTTT GGTGCAGTC TTTTTCTCTTCCCGA TERM 1101 904261 - 904249 - g 79 -9.1 -3.91959 | ATACAAGTACAACAA GACGG AGA CCGTC TAAAGCAGAACTGGA SPH_0982 904156 - 904305 + | hypothetical protein SPH_0983 904299 - 906524 + | DNA translocase FtsK TERM 1102 906530 - 906559 + T 100 -12.3 -4.39133 | opp_overlap 906530 ACAACAATAAAAAAA TAGCTTCTTTCCA AGTT TGGAAGGAGGCTA TTTTAGTGATTATTG TERM 1103 906559 - 906530 - T 100 -7.9 -5.97979 | opp_overlap 906530 ACAACAATAAAAAAA TAGCTTCTTTCCA AGTT TGGAAGGAGGCTA TTTTAGTGATTATTG SPH_0984 907003 - 906569 - | hypothetical protein SPH_0985 907141 - 908283 + | cysteine desulfurase thiI 908292 - 909506 + | thiamine biosynthesis/tRNA modification protein ThiI SPH_0987 909643 - 910467 + | esterase superfamily SPH_0988 910489 - 910824 + | hypothetical protein SPH_0989 910821 - 911228 + | hypothetical protein SPH_0990 911241 - 912407 + | carbamoylphosphate synthase large subunit TERM 1104 912416 - 912443 + F 89 -7.1 -5.23292 | opp_overlap 912414 912411 AGAATAAGAACTATC GGATTAAGGAA ATTCAC TCCCTTAATCC TTTTGTTTTGTCTGG TERM 1105 912708 - 912726 + G 72 -10.4 -2.61383 | overlap 912707 GCTAGCCGCAGGTTG CTCAAAAC ACT GTTTTGAG GTTGTGGATAGAACT SPH_0991 912667 - 912792 + | hypothetical protein SPH_0992 912915 - 914408 + | type I restriction modification enzyme methylase subunit TERM 1106 914933 - 914916 - g 77 -4.9 -4.98857 | opp_overlap 914924 914925, overlap 914921 914924 ATTCAATCAGAAAAA TTTAACG AGCT CGTCAAA TCCCGATTTAACGAG SPH_0993 914421 - 915338 + | type I restriction enzyme EcoBI specificity protein (S protein)(S.EcoBI) SPH_0994 915430 - 915666 + | hypothetical protein TERM 1107 915710 - 915700 - g 75 -2.6 -5.22943 | AGCAAATTGAAAAAA TAAA TGC TTTA GCAATTCAACGGTAT SPH_0995 915663 - 916076 + | prophage maintenance system killer protein TERM 1108 916119 - 916162 + F 77 -4.8 -5.14163 | gap 1, opp_overlap 916121 916134, overlap 916121 AAGAAAATAAATGAA CAGACAATATTAGAATTCTGT AAT GCAGAAA-CTGATATTGTCTC TTTTTATTGATGAAT TERM 1109 916121 - 916160 + F 78 -7.4 -4.19587 | gap 1, opp_overlap 916121 916134, overlap 916119 GAAAATAAATGAACA GACAATATTAGAATTCTGT AAT GCAGAAA-CTGATATTGTC TCTTTTTATTGATGA TERM 1110 916518 - 916540 + G 77 -5 -4.88485 | opp_overlap 916518 AGTAAGGCAAATTTA GACAATAT TAGGCGT ATATTGTC TTCTTTTTTTGCTTG SPH_0996 916194 - 917159 + | phage integrase family integrase/recombinase SPH_0997 917193 - 918215 + | restriction modification system DNA specificity subunit TERM 1111 920698 - 920710 + G 88 -9.1 -4.53602 | GTCGTCACATTGTTT CGCTG ACT CAGCG TTTATTTAATATCAA SPH_0998 918444 - 921794 + | type I restriction-modification system R subunit TERM 1112 922106 - 922124 + G 72 -10.4 -2.61383 | overlap 922105 ACTAGCTGCAGGCTG CTCAAAAC ACT GTTTTGAG GTTGTAGATGAAACT TERM 1113 922150 - 922138 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG TAACCATACCTACGG SPH_0999 922065 - 922220 + | chlorohydrolase TERM 1114 922228 - 922276 + T 100 -20.7 -2.74371 | opp_overlap 922228 922233, overlap 922233 CTTCCTAGGATAAAG CAAAACGCATAGTATCAAGGGTT TTC AACACTTGATACTATGCGTTTTC TGATGTTAAAGACTT TERM 1115 922276 - 922228 - T 100 -20.7 -2.97475 | opp_overlap 922228 922233, overlap 922233 CTTCCTAGGATAAAG CAAAACGCATAGTATCAAGGGTT TTC AACACTTGATACTATGCGTTTTC TGATGTTAAAGACTT TERM 1116 922233 - 922271 + T 100 -20.6 -4.55023 | opp_overlap 922228 922233, overlap 922228 TAGGATAAAGCAAAA CGCATAGTATCAAGGGTT TTC AACACTTGATACTATGCG TTTTCTGATGTTAAA TERM 1117 922271 - 922233 - T 100 -20.6 -4.63479 | opp_overlap 922233 922228, overlap 922228 TAGGATAAAGCAAAA CGCATAGTATCAAGGGTT TTC AACACTTGATACTATGCG TTTTCTGATGTTAAA SPH_1000 922807 - 922337 - | arginine repressor SPH_1001 925097 - 922824 - | Xaa-pro dipeptidyl-peptidase TERM 1118 922928 - 922940 + g 77 -7.7 -4.27465 | opp_overlap 922927 922928 TATAGAGGACTAAAC GGAGA GTG TCTCC TTCTTTTAGCTTGTA TERM 1119 924064 - 924074 + g 70 -5.4 -4.35524 | AGATAGGAAAGTCCC GTTG TAG CAAC TTTTCCGTTTGACCA TERM 1120 928106 - 928096 - g 70 -5.4 -4.39002 | opp_overlap 928093 928096 AAATTTGTCAGAAAA TAGC TAT GCTA TTATTTTGGTTGAAG TERM 1121 928096 - 928106 + G 70 -5.4 -4.32402 | opp_overlap 928096, overlap 928093 AAATTTGTCAGAAAA TAGC TAT GCTA TTATTTTGGTTGAAG SPH_1002 925445 - 928546 + | DNA polymerase III subunit alpha pfkA 928629 - 929636 + | 6-phosphofructokinase TERM 1122 930235 - 930222 - g 73 -6.7 -4.19506 | AGTTGAAGTTGAAAA CGATG GTAT CATCG CTAAACAAAAAGGTG pyk 929695 - 931200 + | pyruvate kinase TERM 1123 931249 - 931215 - T 72 -2.9 -5.38398 | gap 1, opp_overlap 931215 931236 AGAAAAATATAAAAA CCTATCATATCCAGCT TTCT AGCCTG-TATGATGGG CTCTTTTTTTTGTCC SPH_1005 931608 - 931420 - | hypothetical protein SPH_1007 932935 - 933807 + | putative lipoprotein SPH_1008 934297 - 933914 - | mobile genetic element SPH_1009 934440 - 934751 + | hypothetical protein SPH_1010 934755 - 935471 + | hypothetical protein TERM 1124 935542 - 935583 + T 90 -8.2 -5.16206 | gap 1, opp_overlap 935542 CATATAACAAAAAAA CGAACAGGCTCTTTTTCTG TTATT CAGAAGA-GAACTTGTTCG TTTTTATCTTGATTT TERM 1125 935583 - 935542 - T 93 -6 -5.9218 | gap 1, opp_overlap 935542 CATATAACAAAAAAA CGAACAGGCTCTTTTTCTG TTATT CAGAAGA-GAACTTGTTCG TTTTTATCTTGATTT SPH_1011 936416 - 935601 - | ABC transporter, substrate-binding protein TERM 1126 936428 - 936408 - G 72 -3.3 -5.10154 | overlap 936410 936413 AGCTAAAACTAAAAA TCGAATCAT AGG ATGACTCCA ATCAAGAGAGAATAG SPH_1012 937318 - 936413 - | putative permease TERM 1127 936848 - 936837 - G 75 -3 -5.1963 | CTCAAGTAAGAAAAA TCAT GCTC ATGA CAAGCCAGACGATTT TERM 1128 937169 - 937139 - G 70 -2.5 -5.03747 | overlap 937141 AAAGGTCCCAAAAAA GATTCTCCCCCAA CGATT TCGAGGGAGAAAA TGATAAACCTTGTCA TERM 1129 937167 - 937141 - G 89 -9.5 -4.13963 | overlap 937139 AGGTCCCAAAAAAGA TTCTCCCCCAA CGATT TCGAGGGAGAA AATGATAAACCTTGT SPH_1013 937450 - 937319 - | hypothetical protein TERM 1130 937636 - 937618 - g 72 -10.4 -2.61383 | opp_overlap 937617 937634, overlap 937617 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CTGACTTCGTCAGTC TERM 1131 939677 - 939662 - g 71 -7.6 -3.88498 | GTCCTAGATATCAAA GACCTA GTGG TAGGTC AGAAGCTAGAAGGTG SPH_1014 937532 - 939904 + | S1 RNA-binding domain-containing protein SPH_1015 939891 - 940340 + | zinc-dependent metalloprotease SPH_1016 940399 - 940671 + | PspC domain-containing protein TERM 1132 940703 - 940739 + T 100 -9.8 -5.50313 | gap 1, opp_overlap 940703 TGGAATAAGCAAAAA GCTTTAAATCAA-TAGT CTAA ACTGCTTGATTTAAAGC TTTTTTACTTTTATA TERM 1133 940739 - 940703 - T 88 -7.6 -4.99435 | gap 1, opp_overlap 940703 TGGAATAAGCAAAAA GCTTTAAATCAA-TAGT CTAA ACTGCTTGATTTAAAGC TTTTTTACTTTTATA SPH_1017 940883 - 940719 - | hypothetical protein SPH_1018 941216 - 941025 - | hypothetical protein SPH_1019 941644 - 942402 + | bacitracin export ATP-binding protein BceA SPH_1020 942404 - 944392 + | peptide ABC transporter permease TERM 1134 944424 - 944397 - T 89 -7.8 -5.22039 | opp_overlap 944399, overlap 944399 TGCAAATGTAAAAAA GATACCTCGACT TCAA AATCGAGGTATT TCTTGTTTTCTAAAT TERM 1135 944399 - 944422 + T 86 -8.2 -4.72617 | opp_overlap 944397 944399 CAAATGTAAAAAAGA TACCTCGACT TCAA AATCGAGGTA TTTCTTGTTTTCTAA TERM 1136 944422 - 944399 - T 100 -10.4 -4.23298 | opp_overlap 944399, overlap 944397 CAAATGTAAAAAAGA TACCTCGACT TCAA AATCGAGGTA TTTCTTGTTTTCTAA SPH_1021 945024 - 944434 - | integral membrane protein TERM 1137 944688 - 944676 - G 75 -7.7 -3.99898 | opp_overlap 944686 CAACGAAGCTAGAAA TGGCA GCG TGCCA AGGATTGGTAAATTC SPH_1024 946445 - 946332 - | hypothetical protein TERM 1138 946481 - 946466 - H 79 -5.4 -5.16237 | overlap 946468 AACCCGAGTAAAAAA TGCCTA CGGA CAGGCA GGGTTGAATGCCGAA TERM 1139 946555 - 946572 + H 73 -8.5 -3.29973 | TTTTATAAGTTGATG TTAGGAC ACTT GTCCTAA TTCATAAATTTTTAG TERM 1140 946717 - 946736 + H 100 -12.2 -5.1675 | opp_overlap 946713 946710 CGTCAGAAGATTGCA GAGCAGGT GAAA ACCTGCTC TTTTTTCATGAGTCA TERM 1141 946851 - 946826 - g 74 -6.2 -4.36262 | gap 1, opp_overlap 946830 AGAGTTAGATCAAAA CCAA-GCCCCA ATTTA TGAGGCCTTGG TGAAGTTACGCAAGA SPH_1026 946806 - 948281 + | arginine decarboxylase TERM 1142 949964 - 949931 - g 74 -3.9 -5.08824 | gap 1, overlap 949933 949936 TTTGCATCGAAAAAA TACC-ACCCTGTCAAA GAT TTTGACAAGGAAGGTT GGAAAAAACGCCAGC TERM 1143 949961 - 949933 - g 85 -8.9 -4.17608 | overlap 949931 949936 TGCATCGAAAAAATA CCACCCTGTCAAA GAT TTTGACAAGGAAG GTTGGAAAAAACGCC TERM 1144 949958 - 949936 - g 82 -11.4 -3.09579 | overlap 949933 949931 ATCGAAAAAATACCA CCCTGTCAAA GAT TTTGACAAGG AAGGTTGGAAAAAAC speE 949217 - 950077 + | spermidine synthase lys 950074 - 951333 + | saccharopine dehydrogenase nspC 951333 - 952460 + | carboxynorspermidine decarboxylase TERM 1145 952867 - 952881 + G 75 -10 -3.03443 | CAGTCGTTTTGCTGA GGCCTT GGA AAGGCC TGTCTATGATGCTAA aguA 952457 - 953542 + | agmatine deiminase aguB 953552 - 954427 + | N-carbamoylputrescine amidase TERM 1146 954564 - 954602 + T 89 -7 -5.26918 | gap 1, opp_overlap 954569, overlap 954569 TTTTAAATATTAGCA AAAAAGCAAATAG-CAG TAACTT CTGTCTATTTGCTTTTC TTTTTTATAGAATAT TERM 1147 954597 - 954569 - T 89 -6.9 -5.2112 | gap 1, opp_overlap 954564 954569 AATATTAGCAAAAAA GCAAATAG-CAG TAACTT CTGTCTATTTGC TTTTCTTTTTTATAG TERM 1148 954569 - 954597 + T 93 -6.9 -5.49579 | gap 1, opp_overlap 954569, overlap 954564 AATATTAGCAAAAAA GCAAATAG-CAG TAACTT CTGTCTATTTGC TTTTCTTTTTTATAG SPH_1032 955416 - 954607 - | Cof family protein TERM 1149 955234 - 955251 + g 78 -4.1 -5.31275 | gap 1 AATCACATATTCGTT CTGGAGGT CAA GCC-CCAG TTTTTTGTAGTAGGG SPH_1033 955688 - 955909 + | hypothetical protein SPH_1034 955963 - 956634 + | CAAX amino protease TERM 1150 956643 - 956670 + TF 88 -7.8 -5.02074 | opp_overlap 956648, overlap 956648 AAGTTAGCTTACTAA AAAAATGTCGGA ATTT TCCGGCATTTTC TTTTTTCACAAATAG TERM 1151 956648 - 956665 + TF 93 -7.7 -5.42198 | opp_overlap 956648, overlap 956643 AGCTTACTAAAAAAA TGTCGGA ATTT TCCGGCA TTTTCTTTTTTCACA TERM 1152 956665 - 956648 - Tf 84 -5.5 -5.52986 | opp_overlap 956643 956648 AGCTTACTAAAAAAA TGTCGGA ATTT TCCGGCA TTTTCTTTTTTCACA SPH_1035 956883 - 956686 - | hypothetical protein TERM 1153 956712 - 956726 + gF 70 -3.5 -4.83715 | opp_overlap 956712 CTTTCCGATACTGAA GTGGT GTGTA GCCAC TTATTTTTTTGAATT TERM 1154 956796 - 956808 + gF 81 -2.7 -5.54079 | GAAGATAGTTAAGAA GAATA GGA TGTTC TTTTTTCCTTTTTGG SPH_1036 956876 - 957784 + | regulatory function on capsule expression in group B streptococci lspA 957781 - 958242 + | signal peptidase II rluD 958232 - 959119 + | ribosomal large subunit pseudouridine synthase D TERM 1155 959923 - 959913 - g 78 -2.6 -5.47159 | opp_overlap 959913 TTCTAATACAAAAAA TTTT ATA AAAA ATTTGTCTCCTGAGA SPH_1039 959122 - 961017 + | choline binding protein E TERM 1156 961025 - 961042 + F 70 -4.1 -4.80882 | opp_overlap 961025 AACAGTAGTAGAAAA GAAGGTT TTAG GGCCTTC TTTTTCCTATCAACT proB 961118 - 962227 + | glutamate 5-kinase proA 962237 - 963499 + | glutamate-5-semialdehyde dehydrogenase TERM 1157 964010 - 964024 + G 76 -7.1 -4.21994 | GCGACAGGTCTTGCA GGCTG TGGAC CAGCC TTTGTCTATCTCTTT proC 963503 - 964300 + | pyrroline-5-carboxylate reductase TERM 1158 964301 - 964320 + F 71 -5.7 -4.51097 | opp_overlap 964301 GAACTAGGTAAATAA GAGGTAG TTTTAT CTGCCTC TTTTATGGTGGTTGA tmk 964520 - 965158 + | thymidylate kinase SPH_1044 965155 - 966045 + | DNA polymerase III subunit delta SPH_1045 966085 - 966402 + | initiation-control protein YabA TERM 1159 966889 - 966873 - g 70 -8.1 -3.71672 | overlap 966869 GGCCAGCAAAAGCAA TTTTTCG ACT CGAAAAA AGACTATCCTGAAAC SPH_1046 966405 - 967283 + | hypothetical protein TERM 1160 967287 - 967306 + F 91 -5 -5.89921 | opp_overlap 967287 967285 GAAAATGACTAAACA GGGAAG TTTGCCTT CTTCCC TTTTTTTGTTATACT trmFO 967418 - 968752 + | tRNA:M(5)U-54 methyltransferase pyrH 968836 - 969573 + | UMP kinase frr 969582 - 970139 + | ribosome recycling factor TERM 1161 970155 - 970177 + F 84 -8.4 -4.63218 | AAATAAACAGAAAAA CTCAGTTGGC ATT GCTGGCTGAG TTTTATTCGAAAGAA SPH_1050 970160 - 971053 + | S1 RNA-binding domain-containing protein SPH_1051 971062 - 971277 + | hypothetical protein TERM 1162 971402 - 971417 + G 70 -3.3 -4.87291 | opp_overlap 971394, overlap 971394 CAACTGAGTCATCCA GATGA CCTGTT TCATC TTTTTGGTTCCAATG TERM 1163 971679 - 971667 - g 71 -4.9 -4.48713 | TTTACGAAGAAGAAA TTATC AAA GATAA TACTGGGAAACCTAT SPH_1052 971363 - 972367 + | PhoH family protein SPH_1053 972475 - 973044 + | acetyltransferase TERM 1164 973046 - 973070 + F 95 -8.7 -5.54885 | opp_overlap 973045 973046 TTGCAAATAAATAAG CAGTTGAAAAG AAA TTTTTCGACTG TTTTTTCTTCCTCTT SPH_1054 973112 - 973762 + | competence protein TERM 1165 974471 - 974491 + G 86 -7.6 -5.1675 | TATCCACCTCTTTGC CCTATCTG GTATG CAGGTAGG TTTTTTCATGAATGG TERM 1166 974830 - 974844 + G 80 -10 -3.64318 | GTCTAGTCATCTCCT TGGGCA TAT TGCCCA TTCTATCCTTCTATT SPH_1055 973746 - 975986 + | DNA internalization-related competence protein ComEC/Rec2 SPH_1056 976207 - 976353 + | hypothetical protein SPH_1057 976385 - 976972 + | ABC transporter, ATP-binding protein TERM 1167 977261 - 977245 - g 82 -3.7 -5.42862 | AGACGTGCAAAAAAA TCTTTTG ACG CGAAAGA CAGAAATTCTAACTT SPH_1058 976976 - 978157 + | hypothetical protein TERM 1168 978195 - 978217 + T 100 -11.4 -4.8622 | opp_overlap 978194 978189 AAAAACTAACATAGG GAGAGAATCA ACT TGGTTCTCTC TTTTTGATTCGAAAA SPH_1059 978308 - 978174 - | hypothetical protein TERM 1169 978395 - 978383 - H 74 -6.3 -4.2828 | CCCTACGGATGAAAA GTTTC GAA GAAAC GCTATCATAACGTGC TERM 1170 978406 - 978439 + H 70 -4 -5.00895 | gap 2, opp_overlap 978395 978407, overlap 978408 978409 GAAACGCTATCATAA CG-T-GCGGGCTTGTA TATT TACAAGTCCGCTATTG TTTTTCTCTAATAAA TERM 1171 978408 - 978436 + H 89 -9 -4.59846 | gap 1, opp_overlap 978407, overlap 978406 978409 AACGCTATCATAACG T-GCGGGCTTGTA TATT TACAAGTCCGCTA TTGTTTTTCTCTAAT TERM 1172 978409 - 978434 + H 100 -14.1 -3.89226 | opp_overlap 978407, overlap 978408 978406 ACGCTATCATAACGT GCGGGCTTGTA TATT TACAAGTCCGC TATTGTTTTTCTCTA infC 978437 - 978994 + | translation initiation factor IF-3 rpmI 979027 - 979227 + | ribosomal protein L35 rplT 979279 - 979638 + | ribosomal protein L20 TERM 1173 979649 - 979671 + F 80 -7.1 -4.59773 | gap 1, opp_overlap 979651 AATAATAACTGATGA GACTGGAACA GGAT TGT-CCAGTC TTTTTAAAAATAAAG TERM 1174 979753 - 979769 + G 75 -5.9 -4.67038 | CTTGAAAAATCAATC GCATTTT ATC AAGATGC TTTTGGTTTTAAAGA SPH_1063 979696 - 980076 + | lactoylglutathione lyase TERM 1175 980087 - 980116 + F 93 -7.3 -5.47218 | opp_overlap 980092 AATAATTTCGTGCAA GTTAAGTAGAATA TTCG TTTTCTACTTGAC TTTTTTTAGCTGAAA TERM 1176 980264 - 980283 + F 100 -10 -5.06016 | opp_overlap 980264 TACGATTTTAACTGA GGCCTTGC ACTA GCAAGGTC TTTTCTTTATCTGGT SPH_1064 980326 - 981126 + | dihydroorotate dehydrogenase electron transfer subunit SPH_1065 981137 - 982075 + | dihydroorotate dehydrogenase B, catalytic subunit TERM 1177 982199 - 982209 + G 81 -5.4 -5.11063 | TAAGATTTATTTTTT TAGC TCT GCTA TTTTTCTTAGCTAGT SPH_1067 982174 - 984282 + | endo-beta-N-acetylglucosaminidase SPH_1066 985999 - 984254 - | fibronectin/fibrinogen binding protein TERM 1178 984325 - 984348 + g 90 -8.3 -5.1675 | opp_overlap 984325 ATAGTAAGTTAAAAA TCCTGATTT CAAGTA AAATCAGGA TTTTTTCATGGATGC TERM 1179 984348 - 984325 - G 89 -9 -4.76892 | opp_overlap 984325 ATAGTAAGTTAAAAA TCCTGATTTC AAGT AAAATCAGGA TTTTTTCATGGATGC TERM 1180 984700 - 984715 + g 76 -3.3 -5.24449 | TTTTGCCATCGCTTG CTAGA TATTGT TCTAG TTTTTTGCGTTTCTG SPH_1068 986104 - 986601 + | hypothetical protein TERM 1181 986949 - 986964 + G 72 -4.7 -4.67697 | GCGCATTGATTTTTC TCCCA CGAATC TGGGA TTTATTATTTTAAAC SPH_1069 986582 - 986977 + | diacylglycerol kinase (dagk) (diglyceride kinase)(dgk) era 986994 - 987893 + | GTP-binding protein Era TERM 1182 987897 - 987918 + F 71 -6.5 -4.17048 | overlap 987900 987910 AAAGAATACTAAGTA GAGGTGGGC TCAT GCCTGCTTC TTGTTTTACAGAAGG mutM 987908 - 988765 + | formamidopyrimidine-DNA glycosylase coaE 988765 - 989370 + | dephospho-CoA kinase SPH_1073 989357 - 990556 + | multidrug resistance protein MdtG rpmG1 990556 - 990705 + | ribosomal protein L33 secG 990745 - 990978 + | preprotein translocase, SecG subunit TERM 1183 991301 - 991312 + GF 72 -4.4 -4.73108 | GGGGATTTTTCATGC CCAT AAAA ATGG TTTTGGTTTTGTCAG TERM 1184 991943 - 991953 + GF 73 -5.4 -4.55093 | GGAGCTTGGGGTTCA CATC GCA GATG TTTCTTATTATGTGA rnr 991080 - 993434 + | ribonuclease R smpB 993397 - 993864 + | SsrA-binding protein tehB 993880 - 994740 + | tellurite resistance protein TehB TERM 1185 994752 - 994771 + F 100 -7.2 -6.04324 | opp_overlap 994752, overlap 994746 GTAAACACACATGAA GATTAGGA ATTT TCCTGATC TTTTTTCTTTTTTAC SPH_1079 994813 - 995766 + | competence protein pepF1 995785 - 997587 + | oligoendopeptidase F SPH_1081 997589 - 998302 + | O-methyltransferase family protein TERM 1186 998573 - 998561 - g 74 -4.9 -4.68994 | ATGACCATCCAAAAA GTTTT TGA AAAAC AATATGGCTCAGAGC TERM 1187 999120 - 999104 - g 78 -3.7 -5.34632 | AAGAAAACAGAAAAA TCATCTA ATA TTGATGA CTACAAAGAAAAATT SPH_1082 998369 - 999310 + | foldase protein PrsA TERM 1188 999438 - 999470 + T 100 -12.2 -4.76874 | opp_overlap 999441 ATTAATTTATCCGAA GGATTTAGTTCTGT ATTGC ACAGAGCTAAGTCC TTTTAGTTTTATCTT SPH_1083 999779 - 999429 - | integrase core subunit SPH_1084 999903 - 999769 - | hypothetical protein TERM 1189 999909 - 999955 + r 89 -11.8 -3.26471 | opp_overlap 999912, overlap 999912 999914 999949 TTAATTTCATAATAA AAACACCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGGTGTAG TTCATGTACACCTGA TERM 1190 999952 - 999912 - R 100 -17.2 -5.19328 | opp_overlap 999909 999912 999914 999949 ATTTCATAATAAAAA CACCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTGGGGTG TAGTTCATGTACACC TERM 1191 999912 - 999952 + r 100 -17.9 -2.81547 | opp_overlap 999912, overlap 999909 999914 999949 ATTTCATAATAAAAA CACCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGGTG TAGTTCATGTACACC TERM 1192 999914 - 999950 + r 95 -14.7 -2.95521 | opp_overlap 999912, overlap 999912 999909 999949 TTCATAATAAAAACA CCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGG TGTAGTTCATGTACA TERM 1193 1000447 - 1000426 - R 80 -6.7 -4.8048 | gap 1, opp_overlap 1000426 1000446, overlap 1000446 TGTTCATATCAAAAA GGTATTGGCA AGT TGC-AATACC TTTTTACAAGGTTCT TERM 1194 1000426 - 1000447 + r 76 -6.7 -4.60255 | gap 1, opp_overlap 1000426 1000446, overlap 1000446 TGTTCATATCAAAAA GGTATTGGCA AGT TGC-AATACC TTTTTACAAGGTTCT SPH_1085 1001149 - 1000529 - | phosphoglycerate mutase SPH_1086 1001631 - 1001149 - | regulatory protein SPH_1087 1002473 - 1001631 - | integral membrane protein SPH_1088 1003317 - 1002568 - | lyzozyme M1 glmU 1003512 - 1004891 + | UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase TERM 1195 1005164 - 1005152 - g 82 -7.7 -4.51097 | opp_overlap 1005156, overlap 1005154 GGAAGTAGGAGAAAA CACAG CCC CTGTG GCAGCTGCTCTTCGT SPH_1090 1004901 - 1005446 + | ADP-ribose pyrophosphatase SPH_1091 1005458 - 1005772 + | hypothetical protein mtnN 1005789 - 1006481 + | MTA/SAH nucleosidase TERM 1196 1006962 - 1006936 - g 86 -10.3 -4.00445 | overlap 1006959 GATCAGCAACAACAA TTGACCCTTCA AGCCA TGAAGGATCAA GAAAATCTTAAGCTA SPH_1093 1006570 - 1007049 + | hypothetical protein SPH_1094 1007147 - 1007737 + | DNA polymerase III subunit epsilon TERM 1197 1008516 - 1008532 + G 83 -9.5 -3.89411 | opp_overlap 1008515, overlap 1008513 1008523 GGTAGATGATATCAC TCAGAGA GAG TCTCTGA TTCTTGGTATTTTGA SPH_1095 1007746 - 1009509 + | glycerophosphoryl diester phosphodiesterase family protein TERM 1198 1009537 - 1009520 - f 100 -9.9 -5.5112 | TTTAGTAATAAAAAA GAGGAAC GGTT GTTCCTC CCATGATAGGTAAGT TERM 1199 1009547 - 1009570 + F 85 -6.8 -5.37345 | TTCCTCCCATGATAG GTAAGTATTC TTGT GAATGCTTGC TTTTTTGTGGTTGCA SPH_1097 1010229 - 1010369 + | hypothetical protein SPH_1098 1010530 - 1010730 + | hypothetical protein TERM 1200 1011125 - 1011110 - g 70 -3.2 -5.00196 | CGTGAAAGAAGAAAA TGGCTC AGCA GAGACA GAAACTAAACTAGTA SPH_1099 1010772 - 1011176 + | hypothetical protein TERM 1201 1011226 - 1011252 + F 83 -7.3 -4.80396 | TTTTCGTTCACAAAA GCAGCGATGAG TAATC CTTGTCGTTGC TTTTTGGCTATTTTG TERM 1202 1011937 - 1011947 + G 70 -8.2 -3.71527 | TCTCATTTACACTCT GGGC ATG GCCC TTCCTTTCTTGGTCT SPH_1100 1011407 - 1012114 + | cytochrome c-type biogenesis protein SPH_1101 1012125 - 1012682 + | thioredoxin family protein TERM 1203 1012716 - 1012694 - f 82 -7.8 -4.49337 | opp_overlap 1012694, overlap 1012689 CTAGAATCGATAAAA TCTGATTACA AGA TGTAGTCAGA TTTTGGTAACTTCTA TERM 1204 1012694 - 1012716 + F 100 -10 -4.32049 | opp_overlap 1012689 1012694 CTAGAATCGATAAAA TCTGATTACA AGA TGTAGTCAGA TTTTGGTAACTTCTA TERM 1205 1012788 - 1012822 + F 87 -6.4 -5.42605 | opp_overlap 1012791, overlap 1012789 GAAAAACGCGTGACA TCAGTGGAAATCCGTC TTA GACTAACTTCCACTGG TTTTCTTTTTCTTGA TERM 1206 1012789 - 1012821 + F 73 -7.7 -3.83123 | opp_overlap 1012791, overlap 1012788 AAAAACGCGTGACAT CAGTGGAAATCCGTC TTA GACTAACTTCCACTG GTTTTCTTTTTCTTG TERM 1207 1014292 - 1014310 + G 74 -6 -4.43844 | opp_overlap 1014287 1014292 GAATTTAAAACACCA TTGGTACC TCT GTTACCAA TTTTATCGATCATCA SPH_1102 1013056 - 1014447 + | amino acid permease family protein SPH_1103 1014590 - 1015507 + | zinc-binding lipoprotein AdcA SPH_1104 1015515 - 1018064 + | pneumococcal histidine triad protein B TERM 1208 1018090 - 1018116 + F 100 -9.6 -5.00616 | opp_overlap 1018095 GGAGCATATTTTATG GAGAAGTAAC CTTTCGT GTTACTTCTC TTTTTTAGAAAAACG TERM 1209 1018317 - 1018297 - g 73 -8.3 -3.69447 | opp_overlap 1018297 1018300, overlap 1018295 1018300 TTAGTAAAAAATATA TAGCAGCTG GAT CAGCTGTTA TCGTATCCTTGAGTC TERM 1210 1018297 - 1018317 + G 72 -10.5 -2.7044 | opp_overlap 1018297 1018295 1018300, overlap 1018300 TTAGTAAAAAATATA TAGCAGCTG GAT CAGCTGTTA TCGTATCCTTGAGTC TERM 1211 1018300 - 1018314 + G 79 -10 -3.49858 | opp_overlap 1018300 1018297 1018295, overlap 1018297 GTAAAAAATATATAG CAGCTG GAT CAGCTG TTATCGTATCCTTGA TERM 1212 1018314 - 1018300 - g 72 -10 -2.62912 | opp_overlap 1018297 1018300, overlap 1018297 1018295 GTAAAAAATATATAG CAGCTG GAT CAGCTG TTATCGTATCCTTGA TERM 1213 1020820 - 1020810 - g 71 -4 -4.93318 | GAGAAGGTAGAAAAA GAAA AAC TTTC TGAAACTGGGAATAG SPH_1105 1018275 - 1021394 + | pneumococcal histidine triad protein E TERM 1214 1021427 - 1021477 + F 95 -8.7 -4.93661 | gap 1, opp_overlap 1021427 AGTCTGAATCAAAAA TGAAGTTCTCTCAAAAGTTAGA AATAAAAC TCTGACTT-TGGGAGAATTTCA TTTTATTATTAATAT TERM 1215 1021541 - 1021560 + F 71 -5.2 -4.54253 | opp_overlap 1021545, overlap 1021550 TGGAATATTTACTAG TTAATTAA TTGG TTAATTAA TTTATTTAATCATTT SPH_1107 1022404 - 1022880 + | pneumococcal histidine triad protein E SPH_1108 1023175 - 1023432 + | hypothetical protein SPH_1109 1023383 - 1023793 + | hypothetical protein TERM 1216 1023829 - 1023797 - T 89 -7.7 -5.22006 | opp_overlap 1023801, overlap 1023801 1023803 CCAGTAGAATAAAAA GAAAGGCGAAGTAGC TGA GCCACCTCGTCTTTT TAGCCTTTATAAGCT TERM 1217 1023825 - 1023801 - T 95 -8.5 -5.09221 | opp_overlap 1023801, overlap 1023797 1023803 TAGAATAAAAAGAAA GGCGAAGTAGC TGA GCCACCTCGTC TTTTTAGCCTTTATA TERM 1218 1023801 - 1023825 + T 80 -6.3 -4.72486 | opp_overlap 1023801 1023797 1023803 TAGAATAAAAAGAAA GGCGAAGTAGC TGA GCCACCTCGTC TTTTTAGCCTTTATA TERM 1219 1023823 - 1023803 - T 75 -9.7 -2.75415 | opp_overlap 1023801, overlap 1023801 1023797 GAATAAAAAGAAAGG CGAAGTAGC TGA GCCACCTCG TCTTTTTAGCCTTTA pepT 1025052 - 1023829 - | peptidase T TERM 1220 1025316 - 1025290 - g 70 -9.4 -2.70946 | overlap 1025289 1025287 TTTTTTCACAAATAT TCGTCGTGGGGT GAG ACCCCAAGACCA CGAGATTCAGACTCT hemH 1025207 - 1026301 + | ferrochelatase TERM 1221 1026310 - 1026332 + T 89 -8.5 -4.32651 | opp_overlap 1026310 AGAGTAAAGAAAAAA GGATTTAGC TTTGC GCTAGATCC TTTTAATCGATTATT TERM 1222 1026332 - 1026310 - T 89 -6.3 -5.69793 | opp_overlap 1026310 AGAGTAAAGAAAAAA GGATTTAGC TTTGC GCTAGATCC TTTTAATCGATTATT mscL 1026720 - 1026343 - | large conductance mechanosensitive channel protein TERM 1223 1026384 - 1026396 + g 88 -4.1 -5.75945 | TTTCTTGAAGGACTT CCAAT TCG GTTGG TTTTTTTTCGGCAGT SPH_1113 1027233 - 1026802 - | MesH proteine SPH_1114 1027356 - 1027865 + | citrulline cluster-linked gene TERM 1224 1027876 - 1027896 + T 86 -8.3 -4.8048 | opp_overlap 1027876 AATAGAAGAAGATAA GCTAGGTAG TTC TTACCTGGC TTTTTCCTATGGAAA TERM 1225 1027898 - 1027912 + T 70 -7.2 -3.86194 | AGTTCTTACCTGGCT TTTTCC TAT GGAAAA TTTCTAAGGAAACTT TERM 1226 1028072 - 1028054 - T 70 -4.5 -4.70534 | opp_overlap 1028055, overlap 1028055 TAAATAGACAGAAAA GCCCTTG ATTTA CAAGGGT TTTTGTTATGTCTGC TERM 1227 1028055 - 1028071 + T 90 -8 -5.27206 | opp_overlap 1028054 1028055 AAATAGACAGAAAAG CCCTTG ATTTA CAAGGG TTTTTGTTATGTCTG TERM 1228 1028071 - 1028055 - T 72 -8 -3.40694 | opp_overlap 1028055, overlap 1028054 AAATAGACAGAAAAG CCCTTG ATTTA CAAGGG TTTTTGTTATGTCTG SPH_1116 1028291 - 1028133 - | hypothetical protein TERM 1229 1028183 - 1028203 + g 70 -8.3 -3.35996 | overlap 1028184 AACTAGCCGCAGGTT GCTCAAAGC ACT GCTTTGAGG TTGTAGATAGAACTG TERM 1230 1028184 - 1028202 + g 81 -11.8 -2.61383 | overlap 1028183 ACTAGCCGCAGGTTG CTCAAAGC ACT GCTTTGAG GTTGTAGATAGAACT TERM 1231 1028231 - 1028213 - G 71 -9.6 -2.87931 | opp_overlap 1028228 1028229, overlap 1028216 1028228 TTGAGGTTGTAGATA GAACTGAC GAA GTCAGCTC AAAACATGTTTTTGA TERM 1232 1028273 - 1028261 - G 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG TAACCATACATACGG TERM 1233 1028491 - 1028517 + H 87 -6.6 -5.45802 | overlap 1028499 TCACATGAAGATGCC TCTTAGTCCCTA GTC TAGCGACTGGGA TTTTTATTTTCCAAA TERM 1234 1028499 - 1028516 + H 73 -7.7 -3.86397 | overlap 1028491 AGATGCCTCTTAGTC CCTAGTC TAGC GACTGGG ATTTTTATTTTCCAA TERM 1235 1029415 - 1029405 - g 70 -3.2 -4.92385 | TATATCGAAACAAAA GAAG TGG CTCC AATCGAAGAAGTAAA asd 1028622 - 1029698 + | aspartate-semialdehyde dehydrogenase TERM 1236 1029711 - 1029728 + F 87 -9.9 -3.9392 | TAGTCATATCGTTTA GGAGTTC AGAT GAACTCC TTCTTTGAAATAGAG TERM 1237 1029792 - 1029778 - g 78 -2.9 -5.52909 | CAAGATTTAAAAAAA TGTAA AATCA TTACA GCCTTTATTACCCCC TERM 1238 1030115 - 1030102 - g 76 -6.7 -4.35483 | CCTTACTACAACAAA CCTTC TCAA GAAGG GATGTATCAGCACTT dapA 1029754 - 1030689 + | dihydrodipicolinate synthase TERM 1239 1030704 - 1030729 + T 82 -4.1 -5.4593 | gap 1, opp_overlap 1030704 1030699, overlap 1030717 ATAAAGACAATAAAA TCCATGA-CC GAATGAA GGATCATGGA TTTTTCTTATTTTCC TERM 1240 1030729 - 1030704 - T 77 -5.5 -4.96657 | opp_overlap 1030704 1030717, overlap 1030699 ATAAAGACAATAAAA TCCATGACC GAATGAAG GATCATGGA TTTTTCTTATTTTCC trmE 1032109 - 1030736 - | tRNA modification GTPase TrmE TERM 1241 1032138 - 1032154 + r 80 -6.6 -4.68655 | overlap 1032135 ATTAATAGCTATTTT CTTGGA AATTC TCCAAG TTTCTTTTCAAATTG TERM 1242 1032241 - 1032220 - R 100 -9.5 -4.70659 | opp_overlap 1032220 1032237 TTGGAGATTGAAAAA GCCTAAGCA ATTC TGCTTAAGC TAGCTTATTTAGTAC SPH_1120 1032428 - 1032246 - | hypothetical protein tdk 1032551 - 1033150 + | thymidine kinase SPH_1122 1033140 - 1033619 + | acetyltransferase prfA 1033629 - 1034708 + | peptide chain release factor 1 TERM 1243 1034796 - 1034821 + G 77 -4.8 -4.87389 | CTTTTGTCTATCGTA GTCTGAAAAA TCTATC TTTTACAGAC TTTATTTTTGCCCTC TERM 1244 1035115 - 1035100 - g 70 -2.6 -5.14563 | gap 1, overlap 1035102 CGCTCTAGCAAAAAA TAGACCA GAT TGGTC-A GTGACAGCAGCAGAT TERM 1245 1035114 - 1035102 - g 77 -7.7 -4.20707 | overlap 1035100 CTCTAGCAAAAAATA GACCA GAT TGGTC AGTGACAGCAGCAGA TERM 1246 1035509 - 1035497 - g 70 -7.7 -3.76373 | GTTCGAACACTCAAA GACCA ATT TGGTC AAAATAGGATGGTTG hemK 1034708 - 1035547 + | protein-(glutamine-N5) methyltransferase, release factor-specific SPH_1125 1035531 - 1036133 + | Sua5/YciO/YrdC/YwlC family protein SPH_1126 1036135 - 1036566 + | acetyltransferase, gnat family protein glyA 1036628 - 1037884 + | serine hydroxymethyltransferase TERM 1247 1038045 - 1038068 + G 79 -9.7 -3.70511 | opp_overlap 1038041, overlap 1038052 GATGAAGCCAAGACT GGGATTTTC GAAGAA GAAAATCCC TTCTTCAATCATATT TERM 1248 1038157 - 1038174 + G 74 -4.1 -5.17507 | GCATTTCTGAAAATC TCAAGAC CAAT GACTTGA TTTTTGTTCAATTTT SPH_1128 1037892 - 1038866 + | hypothetical protein TERM 1249 1038852 - 1038842 - f 70 -4 -4.87291 | TATCTTAATCAAAAA TATC GAG GATA TCCAAAGTAAATAAT SPH_1129 1038866 - 1039480 + | pneumococcal vaccine antigen A TERM 1250 1039470 - 1039488 + F 85 -6.7 -5.21236 | TCACTCTCTTTTCAA CATCTGG CTAGA CCAGGTG TTTTTGTTATAAGTT SPH_1130 1039554 - 1040528 + | hypothetical protein TERM 1251 1040548 - 1040571 + F 82 -5.3 -5.24129 | TTTCATGGTATAATG GATGGTAAC CGTAAC GTTGCCGTC TTTTTTGTCGGCCAA TERM 1252 1041364 - 1041376 + G 73 -7.7 -3.96327 | GCGATTTTTGGTAAG GAGTG GCG CACTC TTTATGGTCAAGACT TERM 1253 1041649 - 1041636 - g 90 -3.1 -5.94597 | GAATAGTAAAAAAAA TGCTC AGTT GAACA ATATTTCAAACGCCC rumA 1040602 - 1042233 + | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 1254 1042351 - 1042361 + F 73 -4 -5.19879 | opp_overlap 1042351 GCTCAATATAAAGAT TGAT AGG ATCA TTTTTATATTTAAAG TERM 1255 1042632 - 1042688 + F 100 -15.6 -2.65279 | opp_overlap 1042632 1042631, overlap 1042650 TCAAAAAATAAATAG TTGGTGTGCTGTTTATAGTATCCATT TTAAT AATGGATATTGTAATTAGCATACCAA TGAATTTAAAGATTC TERM 1256 1042696 - 1042728 + F 100 -10.1 -4.4648 | opp_overlap 1042693 1042699 1042702, overlap 1042692 1042699 CATACCAATGAATTT AAAGATTCTTTAAAG ATT CTTTAAAGAGTCTTA TTTTGTGATGAAAAT TERM 1257 1042699 - 1042725 + F 100 -11.8 -4.35042 | opp_overlap 1042693 1042699 1042702, overlap 1042692 1042696 ACCAATGAATTTAAA GATTCTTTAAAG ATT CTTTAAAGAGTC TTATTTTGTGATGAA TERM 1258 1042725 - 1042699 - f 83 -9.6 -3.81428 | opp_overlap 1042692 1042696 1042699, overlap 1042693 1042702 ACCAATGAATTTAAA GATTCTTTAAAG ATT CTTTAAAGAGTC TTATTTTGTGATGAA TERM 1259 1042722 - 1042702 - f 75 -9.9 -2.68436 | opp_overlap 1042692 1042699 1042696, overlap 1042693 1042699 AATGAATTTAAAGAT TCTTTAAAG ATT CTTTAAAGA GTCTTATTTTGTGAT TERM 1260 1042761 - 1042788 + F 74 -3.5 -5.31275 | AATATGTAAATCTCA GACGATAGA AATTAAAAAC TCTGTCGTC TTTTTTATACTCAAA SPH_1132 1042982 - 1043200 + | hypothetical protein SPH_1133 1043204 - 1043473 + | hypothetical protein SPH_1134 1043593 - 1044618 + | ABC transporter substrate-binding protein - iron transport TERM 1261 1044668 - 1044623 - g 81 -2.8 -5.64421 | gap 1, opp_overlap 1044629 1044631, overlap 1044627 1044631 ATGCGAAATAAAAAA CAAATAAACCTAGGCATAATT TTTGT AATC-TGCCTAGGTCTTCTTA TTACAATATTTTTGT TERM 1262 1044664 - 1044627 - g 76 -3.6 -5.26158 | gap 1, opp_overlap 1044629 1044631, overlap 1044623 1044631 GAAATAAAAAACAAA TAAACCTAGGCATAATT TTTGT AATC-TGCCTAGGTCTT CTTATTACAATATTT TERM 1263 1044660 - 1044631 - g 84 -6.6 -5.00234 | gap 1, opp_overlap 1044629 1044631, overlap 1044627 1044623 TAAAAAACAAATAAA CCTAGGCATAATT TTTGT AATC-TGCCTAGG TCTTCTTATTACAAT TERM 1264 1045320 - 1045346 + G 84 -8 -4.67608 | opp_overlap 1045320 1045322 1045323 1045325, overlap 1045323 ATGTTAATAGGATAA GATCACTTGCAA TAA TTGCAAGTGTGC TTTTATGTTCAAGTA TERM 1265 1045344 - 1045322 - g 72 -9.2 -3.33348 | opp_overlap 1045320 1045323, overlap 1045320 1045323 1045325 GTTAATAGGATAAGA TCACTTGCAA TAA TTGCAAGTGT GCTTTTATGTTCAAG TERM 1266 1045323 - 1045343 + G 85 -12.7 -3.26141 | opp_overlap 1045322 1045320 1045323 1045325, overlap 1045320 TTAATAGGATAAGAT CACTTGCAA TAA TTGCAAGTG TGCTTTTATGTTCAA TERM 1267 1045343 - 1045323 - g 83 -12.7 -2.59527 | opp_overlap 1045323 1045320, overlap 1045322 1045320 1045325 TTAATAGGATAAGAT CACTTGCAA TAA TTGCAAGTG TGCTTTTATGTTCAA TERM 1268 1045341 - 1045325 - g 71 -9.5 -2.82988 | opp_overlap 1045323 1045320, overlap 1045323 1045322 1045320 AATAGGATAAGATCA CTTGCAA TAA TTGCAAG TGTGCTTTTATGTTC SPH_1135 1044608 - 1045615 + | iron-compound ABC transporter, permease protein TERM 1269 1045987 - 1045977 - g 71 -4 -4.91852 | GGTATTAAAAACAAA TAGT TTA ACTA CTGGAATTATTTCAA TERM 1270 1046328 - 1046344 + G 77 -5.1 -4.86862 | opp_overlap 1046309 ACTTGGTGCAAATCC CGAGCTT TCA AGGCTTG TTTTAATTTTTTGCG SPH_1136 1045615 - 1046622 + | ABC transporter membrane-spanning permease - iron transport SPH_1137 1046622 - 1047416 + | ferric enterobactin transport ATP-binding protein FepC SPH_1138 1047984 - 1048193 + | hypothetical protein SPH_1139 1048354 - 1048485 + | hypothetical protein TERM 1271 1048637 - 1048677 + F 100 -11.3 -4.96848 | opp_overlap 1048636 GACAGTTACCAAGAG GGTCTAATTTTCACTGC TACTTAT GCAGTGGGAATTTGACC TTTTTATATAAGCAA SPH_1140 1049169 - 1049330 + | hypothetical protein TERM 1272 1049456 - 1049443 - g 85 -3.9 -5.58051 | AAAGAAAAAATAAAA GTATA CCTC TATAC ACGAGTATCTACGTC SPH_1141 1049422 - 1051101 + | low similarity to site-specific recombinase SPH_1142 1051369 - 1051935 + | hypothetical protein SPH_1143 1052257 - 1052445 + | hypothetical protein TERM 1273 1052462 - 1052443 - f 79 -3.6 -5.47821 | opp_overlap 1052443 ATTTACTCAAAAAAA TAAGAGCA AAAT TGCTATTA TTTTTTACAAATTGG TERM 1274 1052443 - 1052462 + F 73 -3.6 -5.055 | opp_overlap 1052443 ATTTACTCAAAAAAA TAAGAGCA AAAT TGCTATTA TTTTTTACAAATTGG SPH_1144 1052507 - 1053265 + | hypothetical protein TERM 1275 1053405 - 1053379 - g 70 -9.6 -2.66329 | opp_overlap 1053384, overlap 1053378 1053384 CGAATGGAACAATAT CAAAACAAAGGA CTT TCCTTTATTTCG GAAGGACTGCTTTTT TERM 1276 1053400 - 1053384 - g 73 -5.9 -4.49937 | opp_overlap 1053384, overlap 1053379 1053378 GGAACAATATCAAAA CAAAGGA CTT TCCTTTA TTTCGGAAGGACTGC SPH_1145 1053323 - 1054177 + | ADP-ribosylation/crystallin J1 SPH_1146 1054289 - 1055173 + | hypothetical protein TERM 1277 1055176 - 1055209 + F 72 -9.1 -2.73619 | opp_overlap 1055186, overlap 1055178 1055186 GAAAGAGGATTAGTA TATAGAGAAAGCCTT TTTT AAGGCTTTTTGTATA CTTTAAAAGATAGTT TERM 1278 1055186 - 1055199 + F 84 -6.7 -5.06585 | opp_overlap 1055186, overlap 1055178 1055176 TAGTATATAGAGAAA GCCTT TTTT AAGGC TTTTTGTATACTTTA TERM 1279 1055199 - 1055186 - f 71 -6.7 -4.18367 | opp_overlap 1055178 1055176 1055186 TAGTATATAGAGAAA GCCTT TTTT AAGGC TTTTTGTATACTTTA SPH_1147 1055336 - 1057075 + | neopullulanase SPH_1148 1057350 - 1057652 + | hypothetical protein SPH_1149 1057708 - 1058136 + | aminoglycoside 6'-N-acetyltransferase SPH_1150 1058233 - 1058490 + | hypothetical protein SPH_1151 1058519 - 1058803 + | ABC transporter ATP-binding protein SPH_1154 1059896 - 1061125 + | cell division protein FtsW TERM 1280 1061835 - 1061819 - g 70 -8.7 -3.42996 | opp_overlap 1061818 GACGACGGAGTATAA GCGCTTA GCG CAAGCGC ATGGTCTGAATTTAA ppc 1061145 - 1063841 + | phosphoenolpyruvate carboxylase TERM 1281 1064134 - 1064160 + F 100 -14.6 -5.52384 | TACCGCGCATCGACG TCCTCACACAAG TTT TTTGTGTGAGGA TTTTTTTGATGGAGG SPH_1157 1064254 - 1065258 + | ABC transporter substrate binding protein TERM 1282 1065266 - 1065287 + F 83 -6.5 -5.0133 | opp_overlap 1065267, overlap 1065267 TCGAATAAATAAGGT AGGGAGGAG GAGA CTCTTCCCA TTTTTTAAAAAGATG TERM 1283 1065267 - 1065286 + F 82 -10 -3.60316 | opp_overlap 1065267, overlap 1065266 CGAATAAATAAGGTA GGGAGGAG GAGA CTCTTCCC ATTTTTTAAAAAGAT TERM 1284 1065571 - 1065561 - g 79 -6.8 -4.52589 | CTTCTTTATACAAAA GGGA AGA TCCC AACCTTGCTCTCAGG SPH_1159 1065327 - 1066193 + | ABC transporter, ATP-binding protein TERM 1285 1067086 - 1067073 - g 79 -5.3 -5.09521 | TGAAGAAATCAAAAA CAATG CCAA CATTG TGGAAGTCATAGGAG TERM 1286 1067740 - 1067727 - g 84 -6.7 -4.98255 | opp_overlap 1067726 TTCTAAGTATAAAAA CAGTC GATC GACTG CAATTTTTAACAAAA dnaG 1067038 - 1068798 + | DNA primase SPH_1161 1068801 - 1069910 + | RNA polymerase sigma factor RpoD (sigma-A) (sigma-43) SPH_1162 1069924 - 1070253 + | N-6 adenine-specific DNA methylase YitW TERM 1287 1070322 - 1070268 - f 75 -10.1 -2.54448 | gap 1, opp_overlap 1070269 1070270, overlap 1070267 1070287 AACATATAAAAGCAT GTGAGAGACTGTTGGAAAAGCGAGGA AATT TCCCCTCTTTTCCTCTAGTCTCTC-C TTTCTTTTGCTGATT TERM 1288 1070269 - 1070322 + F 100 -10.3 -4.74518 | opp_overlap 1070268 1070267 1070287, overlap 1070270 ACATATAAAAGCATG TGAGAGACTGTTGGAAAAGCGAGGA AATT TCCCCTCTTTTCCTCTAGTCTCTCC TTTCTTTTGCTGATT TERM 1289 1070270 - 1070321 + F 95 -13.8 -3.43084 | opp_overlap 1070268 1070267 1070287, overlap 1070269 CATATAAAAGCATGT GAGAGACTGTTGGAAAAGCGAGGA AATT TCCCCTCTTTTCCTCTAGTCTCTC CTTTCTTTTGCTGAT SPH_1163 1070368 - 1071411 + | glycosyl transferase CpoA SPH_1164 1071427 - 1072752 + | glycosyl transferase, group 1 SPH_1165 1072766 - 1072957 + | hypothetical protein SPH_1166 1073016 - 1073150 + | hypothetical protein TERM 1290 1073172 - 1073191 + F 71 -3.4 -5.0538 | opp_overlap 1073171, overlap 1073173 TTCAAGAAAATTTAG TGACTGGG ATTT CCCAGCCC TTTTTTAAAGTGAGA SPH_1167 1073220 - 1074524 + | Spo0B-associated GTP-binding protein SPH_1168 1074534 - 1074692 + | hypothetical protein TERM 1291 1074753 - 1074775 + F 100 -9.2 -5.27779 | opp_overlap 1074757 GTCAGCTAAGCTCGA GAAAGGACAA ATT TCGTCCTTTC TTTTTTGATGTTCAA TERM 1292 1075336 - 1075350 + F 77 -8.6 -3.57263 | opp_overlap 1075336 CATTCGGGAGTGAAA CAGTCT GGG AGACTG TTTCAGCCTGAGCCT TERM 1293 1075350 - 1075336 - f 77 -8.6 -3.6502 | opp_overlap 1075336 CATTCGGGAGTGAAA CAGTCT GGG AGACTG TTTCAGCCTGAGCCT TERM 1294 1076047 - 1075994 - f 100 -10.6 -4.52589 | gap 1, overlap 1075996 TTTTTCTACACAAAA TAGGCTCCATAATATCCATAG-GGG ATTTA CCCACTACAAATATTATAGAGCCAA AAATCCCGTGCCTCA TERM 1295 1076045 - 1075996 - f 95 -13.2 -3.87627 | gap 1, overlap 1075994 TTTCTACACAAAATA GGCTCCATAATATCCATAG-GGG ATTTA CCCACTACAAATATTATAGAGCC AAAAATCCCGTGCCT TERM 1296 1076074 - 1076051 - f 100 -13.2 -4.72846 | opp_overlap 1076051 TTATAGAGCCAAAAA TCCCGTGCCT CATC AGACACGGGA TTTTGTGGTACGACG TERM 1297 1076051 - 1076074 + F 100 -11 -4.46212 | opp_overlap 1076051 TTATAGAGCCAAAAA TCCCGTGCCT CATC AGACACGGGA TTTTGTGGTACGACG SPH_1171 1076412 - 1076537 + | hypothetical protein SPH_1172 1077030 - 1076905 - | hypothetical protein TERM 1298 1076989 - 1076971 - G 72 -10.4 -2.61383 | overlap 1076970 AGTTCCATCTACAAC CTCAAAAC AGT GTTTTGAG CAACCTGCGGCTAGT murA1 1077173 - 1078432 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase SPH_1174 1078448 - 1078999 + | acetyltransferase, gnat family protein SPH_1175 1078992 - 1080269 + | CBS domain-containing cytosolic protein map 1080285 - 1081145 + | methionine aminopeptidase, type I TERM 1299 1082271 - 1082229 - f 88 -7.2 -4.98531 | overlap 1082223 1082263 TTGCCAAAGTAAAAA CGTTTAAAATGTTTTCAACA ACC TATCGAAATCATCGTAAACG CTTCGGATTACGAAT TERM 1300 1083551 - 1083563 + G 71 -6.3 -4.23007 | opp_overlap 1083550 GTCGCAGTCAAAACT TCCTT CAT AAGGA TTTTGCAGTTCTCTA pcrA 1082521 - 1084812 + | ATP-dependent DNA helicase PcrA TERM 1301 1084820 - 1084849 + F 81 -5.8 -4.9792 | AAATCTAATTTTCCA TCCTTCTCAC GAATAATAAA GTGAGGAGGA TTTTTATGTACAGTA TERM 1302 1085232 - 1085221 - g 73 -2.2 -5.26316 | overlap 1085224 TTAGGGGATAAAAAA CAAG AGCA CCTG GTGGCACTCTATCTC TERM 1303 1085241 - 1085224 - g 75 -5.5 -4.72201 | overlap 1085221 GGGGATAAAAAACAA GAGCACC TGGT GGCACTC TATCTCAATACTCAA SPH_1181 1084855 - 1085535 + | DNA repair protein RadC SPH_1180 1086221 - 1085532 - | glutamine amidotransferase, class I TERM 1304 1086153 - 1086182 + g 90 -9.3 -5.02715 | GCCTTTTGCTGCGTA GCTCATCATGATG TCAT CATCTGGATGAGC TTTTTCGTTTCCTGT SPH_1182 1086880 - 1086239 - | redox-sensing transcriptional repressor Rex TERM 1305 1086951 - 1086966 + r 72 -6.2 -4.34402 | opp_overlap 1086951 AAAAATAAGAAAAAA CTAAGA AAAA TCTTAG TTTTGATGTAAAAAA TERM 1306 1086966 - 1086951 - R 93 -6.2 -5.80727 | opp_overlap 1086951 AAAAATAAGAAAAAA CTAAGA AAAA TCTTAG TTTTGATGTAAAAAA SPH_1183 1087106 - 1086963 - | hypothetical protein TERM 1307 1087118 - 1087104 - G 70 -8.6 -3.32997 | TCCTGACAAAGTCAA CATGAG AGC CTCATG ATCCTCATACTTGAG SPH_1184 1087533 - 1087186 - | hypothetical protein SPH_1185 1088653 - 1087538 - | putative cysteine desulfurase TERM 1308 1087843 - 1087857 + g 73 -7.1 -4.07786 | opp_overlap 1087831 GAATGCCCTCCAGCT CTGCC AGAAA GGCAG TTTCTAGATTTTGTA SPH_1186 1089622 - 1088663 - | ribose-phosphate pyrophosphokinase (rppk) (phosphoribosylpyrophosphate synthetase) (p-rib-PP synthetase) (prpp synthetase) SPH_1187 1090304 - 1089735 - | adenylate cyclase SPH_1188 1090432 - 1091103 + | GTP pyrophosphokinase SPH_1189 1091087 - 1091905 + | inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) SPH_1190 1091902 - 1092798 + | ribosomal large subunit pseudouridine synthase D pta 1092842 - 1093816 + | phosphate acetyltransferase TERM 1309 1093933 - 1093923 - T 71 -5.4 -4.57073 | GATTGGTGTCAAAAA GGAA AAC TTCC AAGCGATGATATCCT TERM 1310 1094087 - 1094109 + T 100 -13.6 -5.27779 | opp_overlap 1094091 GTCAGCTAAGCTCGA GAAAGGACAA ATT TTGTCCTTTC TTTTTTGATATTCAG TERM 1311 1094105 - 1094091 - T 79 -8.6 -3.89614 | opp_overlap 1094087 GCTAAGCTCGAGAAA GGACAA ATT TTGTCC TTTCTTTTTTGATAT TERM 1312 1094476 - 1094495 + T 72 -9.4 -2.64981 | opp_overlap 1094474 CATACGAAAAGTAGG GCGATAAA AATG TTTATCGC TGAGTTTACGACTAT TERM 1313 1094684 - 1094670 - T 77 -8.6 -3.6502 | opp_overlap 1094670 CATTCGGGAGTGAAA CAGTCT GGG AGACTG TTTCAGCCTGAGCCT TERM 1314 1094670 - 1094684 + T 77 -8.6 -3.57263 | opp_overlap 1094670 CATTCGGGAGTGAAA CAGTCT GGG AGACTG TTTCAGCCTGAGCCT TERM 1315 1095528 - 1095476 - T 93 -8.8 -4.77165 | gap 1, opp_overlap 1095445 1095440 1095477 1095478, overlap 1095478 TTTTCTACAATAAAA TAGGCTCCATAATATCTATAGTGGA TTTA CCCACTACAAATATTATAGAGTC-A TTTTTGCACCTTTCT TERM 1316 1095477 - 1095528 + T 74 -5.3 -4.6526 | opp_overlap 1095476 1095478, overlap 1095445 1095440 1095478 TTTCTACAATAAAAT AGGCTCCATAATATCTATAGTGG ATTTAC CCACTACAAATATTATAGAGTCA TTTTTGCACCTTTCT TERM 1317 1095527 - 1095478 - T 100 -13.9 -4.00512 | opp_overlap 1095445 1095440 1095477 1095478, overlap 1095476 TTCTACAATAAAATA GGCTCCATAATATCTATAGTGGA TTTA CCCACTACAAATATTATAGAGTC ATTTTTGCACCTTTC TERM 1318 1095478 - 1095527 + T 75 -8.8 -3.38071 | opp_overlap 1095478 1095476, overlap 1095445 1095440 1095477 TTCTACAATAAAATA GGCTCCATAATATCTATAGTGG ATTTAC CCACTACAAATATTATAGAGTC ATTTTTGCACCTTTC SPH_1195 1095884 - 1095585 - | hypothetical protein SPH_1196 1096286 - 1096984 + | hypothetical protein rplU 1097172 - 1097486 + | ribosomal protein L21 SPH_1198 1097502 - 1097846 + | hypothetical protein rpmA 1097863 - 1098156 + | ribosomal protein L27 TERM 1319 1098172 - 1098160 - T 82 -5.5 -5.27938 | opp_overlap 1098160 ATCGCTAAATAAAAA GGTCC ATT GAACC TTTTATCCCGAACCT TERM 1320 1098227 - 1098254 + T 100 -10.6 -6.11229 | opp_overlap 1098219 1098226 1098229, overlap 1098229 GAAACAGCTTAAAAT AAGGCTTTCCGA GTTT TCGGAGAGCCTG TTTTTTTGTTTTGGT TERM 1321 1098252 - 1098229 - T 100 -11 -4.2142 | opp_overlap 1098227 1098229, overlap 1098226 AACAGCTTAAAATAA GGCTTTCCGA GTTT TCGGAGAGCC TGTTTTTTTGTTTTG TERM 1322 1098229 - 1098252 + T 100 -13.2 -4.67109 | opp_overlap 1098229 1098226, overlap 1098227 AACAGCTTAAAATAA GGCTTTCCGA GTTT TCGGAGAGCC TGTTTTTTTGTTTTG SPH_1201 1098666 - 1098538 - | hypothetical protein TERM 1323 1099044 - 1099030 - g 75 -2.8 -5.252 | TATTCCTATAAAAAA CCAAAA AGA TATTGG CACACCATCTGATTC ribF 1099004 - 1099921 + | riboflavin biosynthesis protein RibF TERM 1324 1099992 - 1100010 + T 77 -3.1 -5.51353 | opp_overlap 1099951, overlap 1099952 TTTAGTCTAACTTTT GAGGTCA CGACA TTACCTC TTTTTATTCTTTTTC SPH_1203 1100862 - 1100014 - | hypothetical protein TERM 1325 1100929 - 1100939 + H 90 -4 -5.90981 | GATTGACTCCATTAG GATT TTT AATC TTTTTTTTGATATAA SPH_1204 1101004 - 1101843 + | hypothetical protein SPH_1205 1101950 - 1102225 + | DNA-binding protein HU 1 (DNA-binding protein II) (HB) TERM 1326 1102240 - 1102276 + F 100 -11.8 -4.93365 | gap 1, opp_overlap 1102240 ATCAGTCTTTAAAAA GCCTATTGTATCAAGCT TTCT AGCTTGGT-CAGTAGGC TTTTTAATTATGAAA TERM 1327 1102276 - 1102240 - f 82 -7.4 -4.58663 | gap 1, opp_overlap 1102240 ATCAGTCTTTAAAAA GCCTATTGTATCAAGCT TTCT AGCTTGGT-CAGTAGGC TTTTTAATTATGAAA TERM 1328 1103810 - 1103799 - g 78 -7.2 -4.48221 | opp_overlap 1103799 TATCAAGGGAGAAAA GCGC TTTG GCGC TAATGTTGAGGTGGG SPH_1207 1102651 - 1104552 + | ABC transporter ATPase TERM 1329 1104666 - 1104691 + G 86 -4.6 -5.46629 | overlap 1104667 TCTCGCTTTGAGCTT GGGGAGTCTG ACCTAG CAGTCTCCCG TTTTTTTGAGATATT TERM 1330 1104667 - 1104690 + G 73 -8.1 -3.86351 | overlap 1104666 CTCGCTTTGAGCTTG GGGAGTCTG ACCTAG CAGTCTCCC GTTTTTTTGAGATAT SPH_1208 1104555 - 1105418 + | transcriptional regulator TERM 1331 1105491 - 1105447 - f 78 -2.2 -5.75538 | gap 1, opp_overlap 1105447 GGGAAAAAATAAAAA GCTCCTTTC-GGTTTTGATAC AATA GTTTCAAAATTTGAGAGGAGC TTTAATATGAATCGC TERM 1332 1105447 - 1105491 + F 79 -8.8 -3.84825 | gap 1, opp_overlap 1105447 GGGAAAAAATAAAAA GCTCCTTTC-GGTTTTGATAC AATA GTTTCAAAATTTGAGAGGAGC TTTAATATGAATCGC TERM 1333 1106348 - 1106365 + G 71 -4.1 -4.91511 | TTTTGATTTTACTGG CTTTGAC AGGT GTCGGAG TTTTTATGATGGGAT SPH_1209 1105498 - 1106676 + | ABC transporter membrane-spanning permease - macrolide efflux TERM 1334 1106722 - 1106745 + F 100 -11 -4.35042 | overlap 1106720 CTAAGTGTTTTTTCC GCCCTTCTCG TTTG TGAGGAGGGC TTGTTTTATGGTAAA TERM 1335 1106802 - 1106822 + G 70 -9.7 -2.62263 | GAGTTAGTCGCTTTG CTCAATCGC TAT GCGACTGAG TACTATACCAGCGAT TERM 1336 1107467 - 1107481 + G 70 -5.7 -4.4767 | opp_overlap 1107467 AAAGGGTTTGAAGTA CCTAG AACAA CTAGG TTTTGTGGTCAATCC ligA 1106769 - 1108727 + | DNA ligase, NAD-dependent TERM 1337 1110360 - 1110370 + G 73 -5.4 -4.49556 | AATGCCTACCAGATG CCAA ATA TTGG TTTCTTTAATGACAA pulA 1108839 - 1111118 + | pullulanase, type I TERM 1338 1111304 - 1111266 - g 100 -17.1 -4.0031 | gap 1, opp_overlap 1111266 1111302 ATTTTCACGAAACAA GACCTCCTATCAAA-GTT TTTG AACATTTGATAGGAGGTC TTTTTATTATGAAGA TERM 1339 1111266 - 1111304 + G 100 -17.1 -5.18726 | gap 1, opp_overlap 1111266, overlap 1111302 ATTTTCACGAAACAA GACCTCCTATCAAA-GTT TTTG AACATTTGATAGGAGGTC TTTTTATTATGAAGA SPH_1212 1111169 - 1111330 + | hypothetical protein TERM 1340 1111813 - 1111832 + G 77 -8.6 -3.87869 | gap 1, opp_overlap 1111801 CAAGCTGCGCGTGCA GCTCTGCCA GCA TGGC-GAGC TTTATCAGCAATTGA TERM 1341 1111933 - 1111904 - g 73 -2.3 -5.32944 | gap 1 GTGATAAGGAAAAAA TTGGTACTATCCTT GCC AAAGA-AGTAGCAA AAGGGATTAAAGCAG TERM 1342 1112704 - 1112692 - g 76 -3.3 -5.20333 | GATGCACAAGAAAAA GAGGC TCA GGCTC TTACACCAATCAAAC SPH_1213 1111663 - 1113087 + | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 1343 1113092 - 1113121 + F 100 -15.3 -5.58454 | opp_overlap 1113097, overlap 1113119 ATGTGAAATAACGTG TAAAACCAGGAAA TTGT TTTCCTGGTTTTA TTTTTTTGCTATAAA TERM 1344 1113116 - 1113097 - f 100 -10.8 -4.17523 | opp_overlap 1113092 AAATAACGTGTAAAA CCAGGAAA TTGT TTTCCTGG TTTTATTTTTTTGCT glgB 1113570 - 1115498 + | 1,4-alpha-glucan branching enzyme glgC 1115488 - 1116630 + | glucose-1-phosphate adenylyltransferase glgD 1116620 - 1117759 + | glucose-1-phosphate adenylyltransferase, GlgD subunit SPH_1217 1117756 - 1119189 + | glycogen synthase (starch [ glycogen]synthase) TERM 1345 1119224 - 1119194 - f 73 -8.5 -3.19081 | opp_overlap 1119199, overlap 1119199 TAGTTAATTAATAGA TAAAATCGTATGA TGATT TCATACGATTTTT AGGCTGTTTAGAGAG TERM 1346 1119199 - 1119219 + F 86 -8.4 -4.6856 | opp_overlap 1119199 1119194 AATTAATAGATAAAA TCGTATGA TGATT TCATACGA TTTTTAGGCTGTTTA TERM 1347 1119219 - 1119199 - f 86 -8.4 -4.70453 | opp_overlap 1119199, overlap 1119194 AATTAATAGATAAAA TCGTATGA TGATT TCATACGA TTTTTAGGCTGTTTA TERM 1348 1119730 - 1119717 - f 74 -5.3 -4.74219 | AGAAAGAAACTAAAA CTTTC TAAA GAAAG AACGGTGGCAATCGG TERM 1349 1120832 - 1120815 - g 82 -7.7 -4.57073 | opp_overlap 1120815 TAGGTGTTGCAAAAA GAACCCC TGTT GGAGTTC CTGTTATTGCTATTT SPH_1221 1119902 - 1121017 + | glycerate kinase SPH_1220 1121460 - 1121014 - | hypothetical protein TERM 1350 1121842 - 1121822 - g 74 -4.7 -4.96848 | overlap 1121839 CTTGGTACACAAAAA GCTGTTGAC AAC GTAAACAAC ATCATTGCTGAAGCT eno 1121624 - 1122928 + | phosphopyruvate hydratase TERM 1351 1122950 - 1122926 - T 100 -11.7 -5.11033 | opp_overlap 1122931, overlap 1122931 TACAACCTTAAAAAA TAAAATAGTTC AGT GAACTATTTTA TCCCGAACCATGAAA TERM 1352 1122931 - 1122945 + T 78 -7.2 -4.36914 | opp_overlap 1122931 1122926 CCTTAAAAAATAAAA TAGTTC AGT GAACTA TTTTATCCCGAACCA TERM 1353 1122945 - 1122931 - T 93 -7.2 -5.42198 | opp_overlap 1122931, overlap 1122926 CCTTAAAAAATAAAA TAGTTC AGT GAACTA TTTTATCCCGAACCA TERM 1354 1123000 - 1123028 + T 100 -16.1 -5.19879 | opp_overlap 1122994 ATTTAACAACGTTTC TAGCCCCTCGGAT TTT ATCCGAAGGGCTA TTTTTGTATTTAGAG SPH_1223 1123446 - 1123066 - | integrase/recombinase, phage integrase family protein TERM 1355 1123438 - 1123484 + g 72 -4.6 -4.8048 | gap 1, opp_overlap 1123438 1123440 1123441 1123451, overlap 1123441 AAGAACAAGACAAAA GAGCCTCATAAAAGGTATTGC AACTTG GTAATACCCTTT-TGAGGTGC TTTTTGATATGAGCC TERM 1356 1123680 - 1123658 - H 71 -6.4 -4.1891 | TGTTGGTAAGAGAAA TTTCTGAAAC CAA GCTTCAAAAA AGTCGCTCGTCATCG TERM 1357 1124592 - 1124607 + H 89 -6.8 -5.60689 | opp_overlap 1124592 ATCATAAAACTCAAA GCCTTG TTAC CGAGGC TTTTTTATTATGTGA TERM 1358 1126175 - 1126165 - g 72 -3.2 -5.09259 | CAGCCGAAAACAAAA GGCT GAA AACC TCCTACAAAAATGGA TERM 1359 1126650 - 1126663 + G 71 -6.7 -4.03219 | TTTCCTTGGTCAATT CTGCT CGTA AGCAG TTGTTCTTGTCGGCT TERM 1360 1126675 - 1126685 + G 79 -6.8 -4.57073 | GCAGTTGTTCTTGTC GGCT CCA AGCC TTTTTAACGAAAGTG TERM 1361 1128031 - 1128011 - g 72 -4.7 -4.82901 | overlap 1128012 CTGGTCGGAGAAAAA CTCAAGCAA GCT TGGCTTGAA AAAATAAGAGAGGAG rexB 1124783 - 1128058 + | ATP-dependent nuclease subunit B TERM 1362 1128109 - 1128097 - g 74 -4.8 -4.7173 | GAGGAGATTCAAAAA CTGC AAGAA GCAG AAGCAAATTCGAGCA TERM 1363 1128150 - 1128140 - g 70 -3.2 -4.91285 | AGGAACAGAAGAAAA CTGC CGA GCAA ATCGAAGCTATCTAC TERM 1364 1129072 - 1129050 - g 73 -7 -4.24534 | overlap 1129052 CAACGAAGAGAGAAA GACCCAGTTT GCT AAACTAGGAC AATTATCAGACCAGA TERM 1365 1129070 - 1129052 - g 70 -8.2 -3.70645 | overlap 1129050 ACGAAGAGAGAAAGA CCCAGTTT GCT AAACTAGG ACAATTATCAGACCA TERM 1366 1129596 - 1129609 + G 79 -6.7 -4.59773 | opp_overlap 1129596 AATCAACTATGATAA CAAGC ACCA GCTTG TTTTTGCCAATACCA addA 1128055 - 1131705 + | recombination helicase AddA TERM 1367 1131811 - 1131793 - g 72 -10.4 -2.61383 | opp_overlap 1131792 1131809, overlap 1131792 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CTGACTTCGTCAGTT TERM 1368 1131809 - 1131827 + G 71 -9.6 -2.87931 | opp_overlap 1131793 1131792, overlap 1131792 1131812 TCAAAACAGTGTTTT GAGCTGAC TTC GTCAGTTC TATCTACAACCTCAA TERM 1369 1131856 - 1131838 - g 72 -10.4 -2.61383 | overlap 1131837 AGTTCTATCTACAAC CTCAAAAC AGT GTTTTGAG CTGACTGCGGCTAGC SPH_1227 1131716 - 1131907 + | hypothetical protein TERM 1370 1131944 - 1131956 + G 75 -7.7 -4.11484 | opp_overlap 1131943 CCAGTTAGAAAATCC CTGCA CGA TGCAG TTTTACAGGCTTCGA TERM 1371 1132266 - 1132242 - g 89 -4.3 -5.56112 | opp_overlap 1132247 AGAAAAAGGAAAAAA TCAAGGTCAAT AAA AGTGACTTTGA CGAGCGACTTCTAAA SPH_1228 1131920 - 1132867 + | hypothetical protein TERM 1372 1133098 - 1133132 + F 100 -15.2 -3.28924 | opp_overlap 1133101, overlap 1133101 GATTAGTGATATGAG TAACACCTACCGTGTA AAT TTCATGGTAGGTGTTA TTGTACCCCCAAATA TERM 1373 1133101 - 1133129 + F 95 -12.5 -3.78934 | opp_overlap 1133101, overlap 1133098 TAGTGATATGAGTAA CACCTACCGTGTA AAT TTCATGGTAGGTG TTATTGTACCCCCAA TERM 1374 1133129 - 1133101 - f 83 -10.3 -3.25223 | opp_overlap 1133098 1133101 TAGTGATATGAGTAA CACCTACCGTGTA AAT TTCATGGTAGGTG TTATTGTACCCCCAA TERM 1375 1134179 - 1134165 - g 77 -8.6 -3.80604 | overlap 1134173 AGAAACGAAGAAAGA GGAGAA GAT TTCTCC AAAAGAAAAGACTGG TERM 1376 1134510 - 1134485 - g 90 -4.8 -5.54894 | overlap 1134505 AAGGTACTAAAAAAA CTCAAGTTAT AAAGGA ACAACCTGAG ACTGGTGTAGAACAT TERM 1377 1136497 - 1136472 - g 77 -4.9 -4.9725 | opp_overlap 1136490 AGTTGCATATAAAAA TATAGAAAAAT TATT ACCTTTCTATA ATAGAGATACTATTG SPH_1229 1133305 - 1138983 + | immunoglobulin A1 protease TERM 1378 1138992 - 1138981 - T 77 -3 -5.55769 | TTTGAGAATAAAAAA TAGT GTTT ACTA TTAGGAAATAAAGTT TERM 1379 1139227 - 1139249 + T 100 -13.6 -5.27779 | opp_overlap 1139231 GTCAGCTAAGCTTGA GAAAGGACAA ATT TTGTCCTTTC TTTTTTGATATTCAG TERM 1380 1139245 - 1139231 - T 79 -8.6 -3.89614 | opp_overlap 1139227 GCTAAGCTTGAGAAA GGACAA ATT TTGTCC TTTCTTTTTTGATAT SPH_1230 1140473 - 1139217 - | transposase TERM 1381 1139616 - 1139635 + g 70 -9.4 -2.64981 | opp_overlap 1139614 CATACGAAAAGTAGG GCGATAAA AATG TTTATCGC TGAGTTTACGACTAT TERM 1382 1140599 - 1140546 - H 100 -13.5 -4.77165 | opp_overlap 1140515 1140510 1140546 1140558, overlap 1140548 1140586 TTTTCTACAATAAAA TAGGCTCCATAATATCTATAGTGGA TTTA CCCACTACAAATATTATAGAGTCCA TAATATGACGGGAAC TERM 1383 1140597 - 1140548 - H 100 -13.9 -4.00512 | opp_overlap 1140515 1140510 1140546 1140558, overlap 1140546 1140586 TTCTACAATAAAATA GGCTCCATAATATCTATAGTGGA TTTA CCCACTACAAATATTATAGAGTC CATAATATGACGGGA TERM 1384 1140637 - 1140652 + H 84 -5.4 -5.4251 | opp_overlap 1140637 TGCTCCCTCTGAAAA GTCATC ATTT GATGGC TTTTTTCTATATAGG TERM 1385 1140930 - 1140914 - H 90 -10.9 -3.71174 | opp_overlap 1140914, overlap 1140907 AATAAATACTTGAAA CCCTTGA ATT TCAAGGG TTTTTGTGAGTACAG TERM 1386 1140914 - 1140930 + H 100 -10.9 -4.87665 | opp_overlap 1140907 1140914 AATAAATACTTGAAA CCCTTGA ATT TCAAGGG TTTTTGTGAGTACAG TERM 1387 1141048 - 1141073 + H 91 -2.6 -6.09196 | ATATTTATTATGTTA CGGAAAGG AATTTCACAA TCTTTCCG TTTTTTTATTTTCAG SPH_1231 1141097 - 1141270 + | hypothetical protein TERM 1388 1141536 - 1141526 - g 82 -4 -5.52384 | TGTCTATCAAAAAAA TTCT TAA AGAA TATGACTTAATTGAT TERM 1389 1141695 - 1141661 - g 79 -3.4 -5.42259 | opp_overlap 1141680, overlap 1141643 1141641 1141663 1141680 CTAGTGTTAAAAAAA GACTAGGGCAGGTTGA AAA TGAAACGGCCCCCGTC TCATATTCAGCCCCT TERM 1390 1141698 - 1141680 - g 86 -9.6 -4.11394 | opp_overlap 1141680, overlap 1141661 1141663 AGGGCAGGTTGAAAA TGAAACGG CCC CCGTCTCA TATTCAGCCCCTAGT SPH_1232 1141267 - 1142046 + | replication initiator protein A (RepA) N-terminus SPH_1233 1142145 - 1143503 + | methyl transferase SPH_1234 1143487 - 1143936 + | hypothetical protein SPH_1235 1143929 - 1144309 + | hypothetical protein SPH_1236 1144322 - 1144555 + | hypothetical protein TERM 1391 1144857 - 1144869 + G 71 -4.1 -4.86293 | overlap 1144858 AATTGGCCTTCAACA TCAAG TTC CTTGG TTTTCATTTTTATTG SPH_1237 1144558 - 1145145 + | CAAX amino protease TERM 1392 1145257 - 1145213 - f 100 -16.2 -3.6215 | opp_overlap 1145217 1145222, overlap 1145217 1145222 TGAATTGATTTTAAA GAAATAAAATGCTAACATAT ATAGA AGATGTTAGCATTTTATTTC TAAGAAAGGAGAATG TERM 1393 1145217 - 1145253 + F 90 -11.2 -3.85698 | opp_overlap 1145213 1145217 1145222, overlap 1145222 TTGATTTTAAAGAAA TAAAATGCTAACATAT ATAGA AGATGTTAGCATTTTA TTTCTAAGAAAGGAG TERM 1394 1145253 - 1145217 - f 100 -11.2 -4.44046 | opp_overlap 1145217 1145222, overlap 1145213 1145222 TTGATTTTAAAGAAA TAAAATGCTAACATAT ATAGA AGATGTTAGCATTTTA TTTCTAAGAAAGGAG TERM 1395 1145222 - 1145248 + F 83 -6.7 -4.99043 | opp_overlap 1145217 1145213 1145222, overlap 1145217 TTTAAAGAAATAAAA TGCTAACATAT ATAGA AGATGTTAGCA TTTTATTTCTAAGAA TERM 1396 1145248 - 1145222 - f 84 -6.7 -5.18866 | opp_overlap 1145222 1145217, overlap 1145217 1145213 TTTAAAGAAATAAAA TGCTAACATAT ATAGA AGATGTTAGCA TTTTATTTCTAAGAA TERM 1397 1145471 - 1145487 + G 85 -7.3 -4.86731 | TTGTCATTCAGTATC GATTTCC AAA GGGAATC TTTTCTTTGGAGACA SPH_1238 1145275 - 1145865 + | hypothetical protein TERM 1398 1146599 - 1146583 - g 73 -8.1 -3.79787 | TGAGAGGAATTGAAA TTTCTGA TTA TCAGAAA GAGCTATGGATTCGT SPH_1239 1145865 - 1146701 + | hypothetical protein TERM 1399 1146704 - 1146741 + F 87 -12.3 -3.06162 | opp_overlap 1146694 1146709, overlap 1146709 ACAAATATTTTAGTA CAAAAGCAACTCATT CGTAAATC AGTGAGTTGCTTTTG TATTCCAATAACCTC TERM 1400 1146709 - 1146736 + F 80 -6.4 -4.67608 | opp_overlap 1146694 1146709, overlap 1146704 TATTTTAGTACAAAA GCAACTCATT CGTAAATC AGTGAGTTGC TTTTGTATTCCAATA SPH_1240 1146983 - 1147282 + | hypothetical protein SPH_1241 1147272 - 1147760 + | hypothetical protein TERM 1401 1148041 - 1148052 + G 73 -7.2 -4.13014 | opp_overlap 1148039 1148041 AGAAGGAGTAGAATA CGGG AGCG CCCG TTTTGGAACTCTAAA SPH_1242 1147760 - 1149637 + | TraG/TraD family protein SPH_1243 1149658 - 1149900 + | hypothetical protein SPH_1244 1149917 - 1150771 + | hypothetical protein TERM 1402 1150806 - 1150781 - f 78 -7.6 -4.13872 | opp_overlap 1150781 ATGTAATTAGATAAA GGCTAGGAAG TGATTG CTTCTTAGCC TTTTTAGAAAGGAAA TERM 1403 1150781 - 1150806 + F 100 -10.5 -4.56597 | opp_overlap 1150781 ATGTAATTAGATAAA GGCTAGGAAGT GATT GCTTCTTAGCC TTTTTAGAAAGGAAA SPH_1245 1150825 - 1151184 + | hypothetical protein TERM 1404 1152153 - 1152169 + G 71 -3.7 -4.92777 | opp_overlap 1152155, overlap 1152155 1152160 1152165 CAGAGACAGGAGATA AACTGTT TCA AACAGTC TTTTTGATTGGTGTT SPH_1246 1151177 - 1153492 + | hypothetical protein SPH_1247 1153504 - 1156317 + | M23 peptidase domain-containing protein TERM 1405 1156511 - 1156537 + F 100 -13.8 -5.24129 | opp_overlap 1156504 1156500 TAAACCGACTGACTA GGTGGCTTACAG ACT CTGTAAACCACC TTTTTTGTGAGGAAA SPH_1248 1156555 - 1157130 + | hypothetical protein TERM 1406 1157176 - 1157200 + F 93 -5.8 -5.89921 | gap 1 TTTTATCATTTTCAG GAGAACGCAGT TTTG GCT-CGTTCTC TTTTTTTGTTGTGAT SPH_1249 1157282 - 1157692 + | Ig domain-containing protein TERM 1407 1157690 - 1157713 + F 100 -10.4 -4.3586 | ATGGAGATAGAGTTG TAGGGGAATC AGAT GATTCTCCTA TTTTCGTATAGATGA TERM 1408 1158985 - 1158965 - f 72 -2.5 -5.33866 | CAAATCGAGAAAAAA TTGAAACGA ATA TCGCCGCAA TTGAACTTGTTAAAA TERM 1409 1159414 - 1159384 - f 71 -6.3 -4.21933 | gap 1 GCAATCGCAAAACAA CTC-CACCCCAATA CCCA TATTGAAGTGCGAG GATTTGAAGAAGTGC TERM 1410 1159674 - 1159685 + F 75 -7.2 -4.09739 | AGGGGGAGTTCGTTT GCCG GATA CGGC TTTTAAAAGGATTGC TERM 1411 1161556 - 1161542 - f 77 -3.5 -5.55769 | TCGTAGAAGAAAAAA GAGCC TTGTT AGCTC ATGAGGTAGGTTCAG TERM 1412 1163857 - 1163834 - f 78 -2.4 -5.68438 | gap 1, opp_overlap 1163834 TTATCAAACAAAAAA GGC-CGAATAC GAT GTACTTGCGCC ATTGATTGAAACAGA SPH_1252 1164038 - 1164322 + | hypothetical protein SPH_1253 1164336 - 1164656 + | hypothetical protein TERM 1413 1164965 - 1164947 - f 83 -6.7 -4.84359 | opp_overlap 1164947 TTATCTCCAGAAAAA GCAACGG CAAAC CCATTGC TATTTAACATGGTTG TERM 1414 1165175 - 1165205 + F 100 -9.3 -5.99154 | opp_overlap 1165175 ACTTTATAATCGAAA TGTACTTTATTTT AAGGC AAGATAAAGTACA TTTTTTTGTTTAATA TERM 1415 1165205 - 1165175 - f 73 -7.8 -3.80893 | opp_overlap 1165175 ACTTTATAATCGAAA TGTACTTTATTTTA AGG CAAGATAAAGTACA TTTTTTTGTTTAATA TERM 1416 1165294 - 1165304 + F 76 -4 -5.2189 | overlap 1165288 TTGTACATTTTTTAT GAAA ATA TTTC TTTTTTAATCATTAC SPH_1254 1165386 - 1166423 + | hypothetical protein SPH_1255 1166468 - 1166866 + | hypothetical protein TERM 1417 1167290 - 1167267 - g 80 -6.2 -4.77719 | gap 1 TAAAATTGAATAAAA TCG-ATCAATT TGG AATTGATACGA AAAGCCTTTATATTA TERM 1418 1167925 - 1167911 - g 71 -7.2 -3.91488 | AAGGCCTTGAAAGAA CTCTTT AAA AAAGAG GGTGCAAGTTATTTT SPH_1256 1167194 - 1168075 + | hypothetical protein TERM 1419 1168172 - 1168202 + F 70 -2 -5.28176 | gap 2, opp_overlap 1168172 1168167, overlap 1168188 CTCAATCACATAAAA GCTAGAG--TTCCG CCAAC TGGAAAGCTCTAGC TTTTTTATAAATGAG SPH_1257 1168479 - 1169120 + | hypothetical protein TERM 1420 1170043 - 1170054 + G 70 -5.8 -4.33165 | overlap 1170050 ATAAGTTATCTAGAT CAGG ATTT CCTG TTTTACTGGATTTGC SPH_1258 1169130 - 1170215 + | DNA primase SPH_1259 1170266 - 1170499 + | hypothetical protein SPH_1260 1170496 - 1170879 + | methyl-accepting chemotaxis protein TERM 1421 1170880 - 1170897 + F 87 -6.3 -5.41746 | gap 1, opp_overlap 1170880 TCGGAATTACACTAA GCAGTCCT GAT AGG-CTGC TTTTTTTGAGAGGTT TERM 1422 1170918 - 1170928 + G 71 -4 -5.00616 | opp_overlap 1170918 TTGAGAGGTTATAGA TGTT TAC AACA TTTTTTAAGAAAAAC SPH_1261 1170917 - 1171189 + | ATPases with chaperone activity, ATP-binding subunit TERM 1423 1171190 - 1171207 + F 100 -9.9 -4.38116 | opp_overlap 1171190, overlap 1171186 AAAAACAGTCAATAA TGCACCA AAAA TGGTGCA TTTACTTTTTCTAAA TERM 1424 1171207 - 1171190 - f 83 -9.9 -3.78168 | opp_overlap 1171190 1171186 AAAAACAGTCAATAA TGCACCA AAAA TGGTGCA TTTACTTTTTCTAAA SPH_1262 1171455 - 1171736 + | hypothetical protein SPH_1263 1171736 - 1172494 + | signal recognition particle GTPase SPH_1264 1172970 - 1173758 + | hypothetical protein SPH_1265 1173997 - 1174245 + | hypothetical protein TERM 1425 1174408 - 1174372 - f 73 -8.1 -3.5275 | overlap 1174368 AAAGCAGACAAGTAA GCCTCCTAAATTCACTT TAG ATAAAAATTTAGGAGGC ATATCAAATGAACTT SPH_1266 1174416 - 1175066 + | chloramphenicol O-acetyltransferase TERM 1426 1175079 - 1175101 + T 100 -12.1 -4.51378 | opp_overlap 1175078 1175077 TAATATGAGATAATG CCGACTGTA CTTTT TACAGTCGG TTTTCTAATGTCACT TERM 1427 1175862 - 1175920 + T 100 -14.9 -4.12416 | opp_overlap 1175863 1175868, overlap 1175870 AAATACTCGTGCATA ATTC-AACAGCTGACCTCCCAATAACTAC ATG GT-GTTATCGGGAGGTCAGCTGTTAGCAC TTATATTTTGTTATT TERM 1428 1175919 - 1175863 - T 100 -20.6 -3.30007 | opp_overlap 1175862 1175870, overlap 1175868 AATACTCGTGCATAA TTC-AACAGCTGACCTCCCAATAACTAC ATG GT-GTTATCGGGAGGTCAGCTGTTAGCA CTTATATTTTGTTAT TERM 1429 1175913 - 1175868 - T 100 -25.1 -3.23274 | gap 1, opp_overlap 1175862 1175870, overlap 1175863 TCGTGCATAATTCAA CAGCTGACCTCCCAATAACTAC ATG GT-GTTATCGGGAGGTCAGCTG TTAGCACTTATATTT TERM 1430 1175870 - 1175911 + T 100 -19.7 -3.07501 | gap 1, opp_overlap 1175868 1175863, overlap 1175862 GTGCATAATTCAACA GCTGACCTCCCAATAACTAC ATG GT-GTTATCGGGAGGTCAGC TGTTAGCACTTATAT SPH_1267 1176854 - 1175931 - | replication protein TERM 1431 1176812 - 1176826 + g 70 -2.9 -5.13354 | GTTTAATAAATTTCT GAAAT ACTTG ATTTC TTTGTTTTTTCTCAG TERM 1432 1177184 - 1177168 - g 72 -8.7 -3.54408 | TCTCATTTAAACCAA GTCGGAA TCA CTCCGAC GCTCATGGGGTCTTT SPH_1269 1177117 - 1177608 + | N-(5'-phosphoribosyl)anthranilate isomerase (prai) TERM 1433 1177624 - 1177647 + F 84 -3.8 -5.72622 | ATCATCATTTGAAAA GTAGCAAGTT GTAA GACTGGCTGC TTTTTTATTTATAGA SPH_1270 1177785 - 1179527 + | neopullulanase SPH_1271 1179647 - 1179958 + | hypothetical protein SPH_1272 1179962 - 1180696 + | hypothetical protein TERM 1434 1180812 - 1180834 + F 88 -7.8 -5.0916 | opp_overlap 1180812 1180816 GTCAGCTAAAATCTA GAAAGGAC ACACTTC GTCCTTTC TTTTTCTATTCAGGG TERM 1435 1181708 - 1181688 - g 70 -3.3 -4.88736 | CATTATCCAGAAAAA TTGGCTGAA CGC TTCAAACAA ATGAAAATTGAAGAA SPH_1273 1181025 - 1181876 + | GTP-binding protein TERM 1436 1181910 - 1181890 - g 73 -6.9 -4.22442 | overlap 1181883 1181887 AAAGAAATCAAAGAA CTCCTTG TGACAGT CAAGGAG TTAGAAAGCCCTATT SPH_1274 1181863 - 1182642 + | ribonuclease HII (RNase HII) SPH_1275 1182658 - 1184208 + | voltage-gated chloride channel family protein TERM 1437 1184208 - 1184248 + F 83 -10.1 -3.75884 | gap 1, opp_overlap 1184226, overlap 1184204 1184210 AGATTTGTTGTTGTA GTATGAGCATTTACATAA CATAAA TTATGTAAATGCTCA-GC TTGATTTATTTAGAA TERM 1438 1184210 - 1184247 + F 83 -11.6 -2.84807 | opp_overlap 1184226, overlap 1184208 1184204 ATTTGTTGTTGTAGT ATGAGCATTTACATAA CATAAA TTATGTAAATGCTCAG CTTGATTTATTTAGA TERM 1439 1184263 - 1184291 + F 79 -5.4 -5.1861 | gap 1, opp_overlap 1184266, overlap 1184266 CTTGATTTATTTAGA AAACCGATTCTCA GAAA TGAGA-TCGGTTA TTTTTTACTGATGAG TERM 1440 1184266 - 1184288 + F 83 -7.1 -4.68456 | gap 1, opp_overlap 1184266, overlap 1184263 GATTTATTTAGAAAA CCGATTCTCA GAAA TGAGA-TCGG TTATTTTTTACTGAT TERM 1441 1184288 - 1184266 - f 78 -7.1 -4.431 | gap 1, opp_overlap 1184266 1184263 GATTTATTTAGAAAA CCGATTCTCA GAAA TGAGA-TCGG TTATTTTTTACTGAT SPH_1277 1184794 - 1185864 + | tyrosine recombinase XerC TERM 1442 1185926 - 1185966 + F 100 -17.2 -4.78839 | opp_overlap 1185919 GCTAAAACTGTACTG CACCCCAAAAGTTAGA CAGAAAAAA TCTAACTTTTGGGGTG TTTTATTATGAAATT SPH_1278 1185959 - 1186492 + | transposase TERM 1443 1187313 - 1187281 - g 100 -12.9 -4.76874 | opp_overlap 1187281 AAGATAAAACTAAAA GGACTTAGCCCTGTA CAA TACAGAACTAAATCC TTTGCTTAAATTAAT SPH_1279 1186654 - 1187322 + | integrase core subunit SPH_1280 1188856 - 1187504 - | mate efflux family protein TERM 1444 1187670 - 1187643 - G 71 -9.9 -2.92026 | GAGTCGAATACCATA GCTACTGGGAG TGTCAC CCCCCAGTAAC CAACCAAACCAAGGT TERM 1445 1187777 - 1187767 - G 75 -5.4 -4.68103 | CTAACTGGAAGAAAA GACT ATA AGTC AAAAAACGTGCTGTC SPH_1281 1190409 - 1189141 - | dihydroorotase (DHOase) TERM 1446 1190171 - 1190159 - G 73 -6.9 -4.14874 | overlap 1190148 ACAACAGTTGTAAAA CCGCC TGC AGCGG CTGCTAGGGCACCAG SPH_1282 1190886 - 1190422 - | mutator MutT protein ung 1191549 - 1190896 - | uracil-DNA glycosylase TERM 1447 1191347 - 1191329 - G 70 -3.1 -4.99035 | overlap 1191330 TCAGGTACAGAAAAA CTCAAGC CCTGC GCTTGAC CTGGCCCGTGATAGG TERM 1448 1191614 - 1191584 - R 86 -12.8 -2.78463 | opp_overlap 1191591, overlap 1191591 ACTGCCTCTATTATA GCAAAAAGTGGCTT TCT AAACCACTTTTTAC AGTTTATCTAAATAA TERM 1449 1191591 - 1191607 + r 72 -5.1 -4.72486 | opp_overlap 1191591 1191584 CTATTATAGCAAAAA GTGGCTT TCT AAACCAC TTTTTACAGTTTATC TERM 1450 1191607 - 1191591 - R 83 -7.3 -4.82667 | opp_overlap 1191591, overlap 1191584 CTATTATAGCAAAAA GTGGCTT TCT AAACCAC TTTTTACAGTTTATC SPH_1284 1192303 - 1191611 - | HAD family hydrolase SPH_1285 1192646 - 1192428 - | hypothetical protein SPH_1286 1194679 - 1192997 - | ABC-type multidrug/protein/lipid transport system, ATPase component TERM 1451 1193230 - 1193214 - G 73 -8.7 -3.68529 | opp_overlap 1193216 ACTTTATTATCTAAA GACGAGG TAG CCTCATC TAATAATAAGATTGG TERM 1452 1194002 - 1193983 - G 71 -5.1 -4.61147 | TAACATTAGATAAAA CATCAAA TTTCCC TTTGATG AAATATATCTCATCC SPH_1287 1195420 - 1194701 - | bacitracin transport ATP-binding protein BcrA SPH_1288 1196295 - 1195555 - | hypothetical protein TERM 1453 1196402 - 1196388 - R 76 -4.3 -5.08015 | opp_overlap 1196388 AATTCAAAAAACAAA CATAC TAAAG GTATG TATAATAGAATTTTT TERM 1454 1196420 - 1196440 + r 77 -4.8 -5.07567 | opp_overlap 1196422 1196436 TAATAGAATTTTTAA TACCATAT CTAGA GTATGGTA TTTTTTAAAATATCA SPH_1289 1197102 - 1196467 - | transcriptional regulator, TetR family protein TERM 1455 1197598 - 1197578 - R 74 -5.4 -4.8048 | CTTTTACATTAAAAA GGAACTGC ATAAA GCAATCCC TTTCTGATTTTGAAA SPH_1290 1198058 - 1197684 - | dihydroxyacetone kinase, phosphotransfer subunit SPH_1291 1198633 - 1198058 - | dihydroxyacetone kinase, L subunit dhaK1 1199644 - 1198655 - | dihydroxyacetone kinase, DhaK subunit SPH_1293 1199771 - 1200328 + | dihydroxyacetone kinase regulator dhaK2 1200325 - 1201314 + | dihydroxyacetone kinase DhaK1b subunit SPH_1295 1201951 - 1201412 - | hypothetical protein TERM 1456 1201701 - 1201714 + g 71 -3.8 -4.87291 | opp_overlap 1201696 1201701 GGTTCAGGAAGAAAA GGTC TTTCGT GACC TTTTTGATTAGAATG SPH_1296 1202503 - 1202009 - | hypothetical protein TERM 1457 1202627 - 1202607 - R 77 -4.7 -5.03747 | opp_overlap 1202607, overlap 1202609 1202626 AAATGCGTCAAAAAA CCTTGCAAC TAG GTTACAACG TTAATGACATTAATC ptsP 1204361 - 1202637 - | phosphoenolpyruvate-protein phosphotransferase TERM 1458 1203103 - 1203128 + g 89 -7 -5.31855 | gap 1, opp_overlap 1203109 ATGTCATCCGCAACT GCAACACCTTC AGCAA GAAGGT-TTGC TTTTTCTTCTTCATA TERM 1459 1203833 - 1203843 + g 71 -4 -4.87786 | opp_overlap 1203833 TGTTTGTTACAAAAG CTTT TAC AAAG TTTTTGTCCAATTGA SPH_1298 1204639 - 1204376 - | phosphocarrier protein HPr (histidine-containing protein) SPH_1299 1204989 - 1205207 + | glutaredoxin TERM 1460 1205648 - 1205662 + G 72 -8.6 -3.56862 | opp_overlap 1205644 TATCTTGAAAGTATG GAAGAC CGT GTCTTC TTTAACGCCCTTTAT SPH_1300 1205288 - 1207447 + | ribonucleoside-diphosphate reductase, alpha subunit TERM 1461 1207551 - 1207538 - f 81 -8.1 -4.1964 | opp_overlap 1207538 TGTAACATTTTAAAA GTCGG GCTT CCGAC TTTTTGTGCGATACT TERM 1462 1207538 - 1207551 + F 90 -8.1 -4.86001 | opp_overlap 1207538 TGTAACATTTTAAAA GTCGG GCTT CCGAC TTTTTGTGCGATACT SPH_1301 1207635 - 1208597 + | ribonucleoside-diphosphate reductase, beta subunit TERM 1463 1208691 - 1208662 - f 71 -3.1 -5.14645 | gap 1, opp_overlap 1208662, overlap 1208670 ATAACCCAACAAAAA TATCGAAAGTTT TGAAAAC AAAC-TTCGATA TTTTTGTTTTTGTTT TERM 1464 1208662 - 1208691 + F 89 -3.1 -5.77734 | gap 1, opp_overlap 1208662 1208670 ATAACCCAACAAAAA TATCGAAAGTTT TGAAAAC AAAC-TTCGATA TTTTTGTTTTTGTTT SPH_1302 1208779 - 1209540 + | lactose phosphotransferase system repressor TERM 1465 1209644 - 1209609 - T 100 -22.2 -5.18726 | opp_overlap 1209609 TTCCCACAATAAAAA GCATAGTATCAGGTGT TGAA ACACCTGATACTATGC TTTTTTCTATATCAA TERM 1466 1209609 - 1209644 + T 100 -22.2 -5.4251 | opp_overlap 1209609 TTCCCACAATAAAAA GCATAGTATCAGGTGT TGAA ACACCTGATACTATGC TTTTTTCTATATCAA SPH_1303 1210076 - 1209819 - | hypothetical protein lacG2 1211525 - 1210119 - | 6-phospho-beta-galactosidase SPH_1305 1213431 - 1211740 - | PTS system, lactose-specific IIC component SPH_1306 1213748 - 1213431 - | lactose-specific phosphotransferase enzyme IIA component SPH_1307 1214620 - 1213784 - | transcription antiterminator LacT TERM 1467 1214714 - 1214664 - R 100 -12.3 -5.32882 | gap 1 TATGAGTACAAAAAA TGACCACAAATGAACTAGAAAATC AGCT GATTT-CTAATTCACCTGTGATCA TGCCTAATATTACTT lacD 1215834 - 1214854 - | tagatose 1,6-diphosphate aldolase lacC 1216765 - 1215836 - | tagatose-6-phosphate kinase lacB 1217291 - 1216776 - | galactose-6-phosphate isomerase, LacB subunit lacA 1217747 - 1217322 - | galactose-6-phosphate isomerase, LacA subunit TERM 1468 1217654 - 1217670 + g 87 -6.5 -5.35224 | opp_overlap 1217656, overlap 1217656 GACCTTCAGCTGTAA CATCCAC AAG GTGGAAG TTTTCTTTTTCTAAG SPH_1312 1218248 - 1217904 - | hypothetical protein SPH_1313 1218806 - 1218417 - | mobile genetic element TERM 1469 1218475 - 1218517 + g 85 -7.2 -4.98531 | overlap 1218462 1218501 ATTCGTAATCCGAAG CGTTTACGATGATTTCGATA GGT TGTTGAAAACATTTTAAACG TTTTTACTTTGGCAA TERM 1470 1219037 - 1219021 - R 70 -8 -3.31322 | opp_overlap 1219006 1219020 CGCAATTGTTCATAA GTGCGA TATTC TCGCAC ATATTGAAGAGTGGC SPH_1315 1219530 - 1219228 - | PTS system, galactose-specific IIB component TERM 1471 1219531 - 1219545 + H 74 -2.1 -5.45813 | AAGAATTTTAATCAT TTGGA TTTCC TCCGA TTTTATTTTTTAATA TERM 1472 1219603 - 1219617 + H 72 -5 -4.76644 | TGTAAGCATAAAGTT TTTCTG GTT CGGAAA TTTTTGATAGATCTT TERM 1473 1220265 - 1220283 + G 72 -10.4 -2.61383 | overlap 1220264 GCTAGCAGCAGGTTA CTCAAAAC ACA GTTTTGAG GTTGTAGATGAAACT TERM 1474 1220309 - 1220297 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAACATGGTTT TERM 1475 1220310 - 1220328 + G 72 -10.4 -2.61383 | opp_overlap 1220309, overlap 1220309 AACTGACGAAGTCAG CTCAAAAC ATG GTTTTGAG GTTGTAGATGAAACT TERM 1476 1220354 - 1220342 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG TAACCATACATACGG SPH_1317 1220224 - 1220421 + | chlorohydrolase TERM 1477 1220444 - 1220426 - T 82 -4.5 -5.56112 | ATAAAAACTAAAAAA GCAGACC ATCTA AGCCTGC TTTACTATTGATTTT lepA 1222325 - 1220502 - | GTP-binding protein LepA SPH_1319 1223132 - 1222404 - | serine/threonine protein phosphatase recN 1224801 - 1223134 - | DNA repair protein RecN SPH_1321 1225239 - 1224808 - | transcriptional regulator of arginine metabolism expression tylA 1226047 - 1225232 - | hemolysin A TERM 1478 1225280 - 1225307 + g 87 -5 -5.42198 | gap 1, overlap 1225281 TACTGCTTCTTTAAT CTCAGCAAG-AAT CTG ATTGCTTGCTGAC TTTTCTTTTTTCAAA TERM 1479 1225281 - 1225306 + g 77 -8.5 -3.83692 | gap 1, overlap 1225280 ACTGCTTCTTTAATC TCAGCAAG-AAT CTG ATTGCTTGCTGA CTTTTCTTTTTTCAA SPH_1323 1226915 - 1226040 - | geranyltranstransferase (farnesyl-diphosphate synthase)(FPP synthase) xseB 1227124 - 1226912 - | exodeoxyribonuclease VII, small subunit TERM 1480 1226948 - 1226963 + g 76 -7.6 -4.1585 | TCCGTCTTCTTGCAT GACCTT GACC AAGGTC TTTTCAGCCTTGTCC TERM 1481 1227054 - 1227078 + g 80 -10.1 -3.70068 | TCCAGAGCAATTTCA CCATTTTCCAA ACT TTGGACAATGG TTTCCAGTTCTGCTA xseA 1228442 - 1227102 - | exodeoxyribonuclease VII, large subunit TERM 1482 1227595 - 1227614 + g 70 -3.4 -4.86773 | TTAGATAGAACATTT CGGACTGC CGTT GCCATCCG TTTTTCCTGATTTTG TERM 1483 1228362 - 1228382 + g 71 -7.5 -3.95621 | opp_overlap 1228362 1228360 TTGACCAGTTAAATA GACCCGTTC CAA GTATGGGTC TTTATCGAATTTCAT TERM 1484 1228561 - 1228547 - R 100 -11.4 -5.36364 | GGAAAAATAGAAAAA GGAGGC AAG GCCTCC ACATGTGATTATTTG udk 1229208 - 1228570 - | uridine kinase TERM 1485 1229305 - 1229284 - R 84 -6.6 -5.1861 | CTCATCAGCAAAAAA CACCAGAG TCTTCC CTCTGATG TTCGACAGTTTTAAC SPH_1327 1229618 - 1229316 - | hypothetical protein truB 1230737 - 1229859 - | tRNA pseudouridine synthase B TERM 1486 1230695 - 1230683 - G 73 -5.5 -4.62783 | overlap 1230684 TACGCAGTTTAAAAA CCGCA TCA TGCGA GGTCATTCCTGCTTC SPH_1329 1232021 - 1230747 - | hypothetical protein TERM 1487 1232081 - 1232100 + r 74 -6.4 -4.45253 | opp_overlap 1232081 AGGGAAAATCAAAAA CAGTGAGT CAAA ACCCACTG TTTATCTTCTTTTAC TERM 1488 1232100 - 1232081 - R 95 -8.6 -5.10154 | opp_overlap 1232081 AGGGAAAATCAAAAA CAGTGAGT CAAA ACCCACTG TTTATCTTCTTTTAC TERM 1489 1233515 - 1233499 - R 95 -8.7 -5.46698 | opp_overlap 1233497 1233499 TTGAAAATGAAAAAA GCACGAC TCA ATCGTGC TCATTTTCTTAATCT TERM 1490 1233499 - 1233515 + r 70 -8 -3.28327 | opp_overlap 1233499, overlap 1233497 TTGAAAATGAAAAAA GCACGA CTCAA TCGTGC TCATTTTCTTAATCT SPH_1332 1234321 - 1233524 - | formate-nitrate transporter TERM 1491 1233775 - 1233763 - G 70 -7.7 -3.75824 | TAGCTGACAACACAA GCCAA AGT TTGGC ACCACCATCTTTGAC TERM 1492 1234013 - 1234023 + g 100 -5.4 -5.75342 | AATCTCAGCTGTTTT TCTC CAA GAGA TTTTTTTTAAGAAAC TERM 1493 1234534 - 1234558 + r 100 -14.5 -4.23674 | opp_overlap 1234534 GAAAATCTTAAAAAA TCAGTGAAATC CAT GATTTCACTGA TTTGTATTAATAAAA TERM 1494 1234558 - 1234534 - R 100 -14.5 -5.15117 | opp_overlap 1234534 GAAAATCTTAAAAAA TCAGTGAAATC CAT GATTTCACTGA TTTGTATTAATAAAA SPH_1333 1235308 - 1234565 - | sortase gyrA 1237776 - 1235308 - | DNA gyrase, A subunit SPH_1335 1237970 - 1238956 + | L-lactate dehydrogenase TERM 1495 1238969 - 1238994 + T 100 -12.7 -5.27399 | opp_overlap 1238969 1238972, overlap 1238985 TAATTTAACTATAGA CAACTCCTTGA ATCA TCAGGGAGTTG TTTTTTCCTGTATTA TERM 1496 1238994 - 1238969 - T 80 -10.5 -3.01984 | opp_overlap 1238969 1238985, overlap 1238972 TAATTTAACTATAGA CAACTCCTTGA ATCA TCAGGGAGTTG TTTTTTCCTGTATTA TERM 1497 1239139 - 1239104 - T 100 -9.9 -4.3739 | opp_overlap 1239099 1239104 TATTTCTCTATAAAA CGCATAGTATCAAGT TTTTAT ACCTGATAATATGCG TTCTATTGTGTCAAA TERM 1498 1239104 - 1239139 + T 73 -7.7 -3.79874 | opp_overlap 1239104, overlap 1239099 TATTTCTCTATAAAA CGCATAGTATCAAGT TTTTAT ACCTGATAATATGCG TTCTATTGTGTCAAA SPH_1336 1239977 - 1239204 - | potassium/ion channel protein SPH_1337 1240278 - 1240024 - | cytotoxic translational repressor of toxin-antitoxin stability system SPH_1338 1240522 - 1240280 - | hypothetical protein SPH_1339 1241422 - 1240613 - | VicX protein TERM 1499 1241073 - 1241085 + g 71 -6.3 -4.17089 | TCGATGTCGATATCT CCAAA GGT TTTGG TTTTACCCATTTCAA SPH_1340 1242773 - 1241424 - | sensor protein YycG SPH_1341 1243470 - 1242766 - | alkaline phosphatase synthesis transcriptional regulatory protein PhoP mutY 1244700 - 1243525 - | A/G-specific adenine glycosylase SPH_1343 1245017 - 1244784 - | hypothetical protein TERM 1500 1244838 - 1244856 + g 72 -10.4 -2.61383 | overlap 1244837 GCTAGCCGCAGGTTG CTCAAAAC ACT GTTTTGAG GTTGTGGATAGAACT TERM 1501 1245006 - 1244980 - G 93 -8.8 -5.252 | opp_overlap 1244983 CAGTCTGAGAAAAAA TGAGCTTGGATA TTA TTTCCAAACTCA CTTAAAGTCAATTTC fhs 1246698 - 1245028 - | formate--tetrahydrofolate ligase TERM 1502 1247097 - 1247075 - g 71 -4.9 -4.51097 | gap 1, overlap 1247076 1247078 TTAATTACGACAAAA CGAG-CTCTG AAGC CAGAGCCTCA TCCTAACCTAAGTAT TERM 1503 1247093 - 1247078 - g 70 -9 -3.2043 | overlap 1247076 1247075 ATTACGACAAAACGA GCTCTG AAGC CAGAGC CTCATCCTAACCTAA coaB 1246928 - 1247617 + | phosphopantothenate--cysteine ligase coaC 1247629 - 1248180 + | phosphopantothenoylcysteine decarboxylase SPH_1347 1248164 - 1248727 + | integral membrane protein TERM 1504 1248764 - 1248731 - f 86 -5.3 -5.75538 | opp_overlap 1248734, overlap 1248734 TTGAAAAAATAAAAA CAATCTCCGCTTTCA AACC TGAAGGTGGAGATTT TGCTCTATACAGTTT TERM 1505 1248761 - 1248734 - f 88 -7 -4.8855 | opp_overlap 1248734, overlap 1248731 AAAAAATAAAAACAA TCTCCGCTTTCA AACC TGAAGGTGGAGA TTTTGCTCTATACAG TERM 1506 1248734 - 1248761 + F 100 -11.4 -4.39166 | opp_overlap 1248734 1248731 AAAAAATAAAAACAA TCTCCGCTTTCA AACC TGAAGGTGGAGA TTTTGCTCTATACAG TERM 1507 1249174 - 1249184 + G 73 -5.4 -4.49644 | GCAGTTTTTGTCATC CTAG CCT CTAG TTTTGGATTTTTGAT SPH_1348 1248991 - 1249518 + | hypothetical protein TERM 1508 1250015 - 1249986 - g 84 -10 -3.84017 | opp_overlap 1249989, overlap 1249989 GAAGCCGAAACACAA CAAGACCTCCAC TATATC GAGGAGGCCTTG GATCAGCTAGGTTAT SPH_1350 1249530 - 1250045 + | biotin repressor family transcriptional regulator SPH_1349 1250509 - 1250042 - | NTP pyrophosphohydrolase TERM 1509 1250144 - 1250170 + g 91 -10.2 -4.56597 | opp_overlap 1250144 TGGTAGCATATCATA GGCCAGATTCAA GTT TGGAATCTGGTC TTTTTGCACCCAAGA SPH_1351 1251071 - 1250583 - | acetyltransferase SPH_1352 1251600 - 1251037 - | acetyltransferase uvrB 1253598 - 1251610 - | excinuclease ABC, B subunit SPH_1356 1254799 - 1256964 + | amino acid ABC transporter, amino acid-binding protein/permease protein TERM 1510 1257001 - 1256980 - g 74 -3.9 -5.0925 | gap 1, overlap 1256984 TGGCAAAATTAAAAA TTGATGTAAA TGA TTTACA-CAA GCACTATGGAAAAAA TERM 1511 1257192 - 1257181 - g 76 -4.4 -5.16572 | ATTTAACTGAAAAAA CAAC CAAT GTTG ACCACGTCCGTGAAA SPH_1357 1256964 - 1257704 + | glutamine transport ATP-binding protein GlnQ TERM 1512 1257712 - 1257731 + F 95 -8.6 -4.88736 | opp_overlap 1257712 ACGTCTAAACTCAAA CTGTAAGG ATTT CCTTGCAG TTTTTCTACCTCGTA TERM 1513 1257809 - 1257797 - f 73 -7.7 -3.76759 | ATTAAGTTTATGAAA TGAGG TTT CCTCA TACCTAGCAAGACTA zwf 1257853 - 1259340 + | glucose-6-phosphate dehydrogenase TERM 1514 1259374 - 1259346 - T 89 -3.1 -5.88565 | opp_overlap 1259348, overlap 1259347 1259348 CTTAGAATAAAAAAA TTTCCTGCAAG TTTATGC CTTGCAGGATT TTTGCTTCTGATTAG TERM 1515 1259373 - 1259347 - T 71 -6.6 -4.11512 | opp_overlap 1259348, overlap 1259346 1259348 TTAGAATAAAAAAAT TTCCTGCAAG TTTATGC CTTGCAGGAT TTTTGCTTCTGATTA TERM 1516 1259372 - 1259348 - T 77 -10.1 -3.05281 | opp_overlap 1259348, overlap 1259347 1259346 TAGAATAAAAAAATT TCCTGCAAG TTTATGC CTTGCAGGA TTTTTGCTTCTGATT TERM 1517 1259348 - 1259372 + T 100 -10.1 -4.95876 | opp_overlap 1259347 1259346 1259348 TAGAATAAAAAAATT TCCTGCAAG TTTATGC CTTGCAGGA TTTTTGCTTCTGATT SPH_1359 1260663 - 1259386 - | cell division protein FtsY TERM 1518 1259798 - 1259808 + g 79 -6.8 -4.62336 | overlap 1259799 TCAAAGACCACGCTG GCTG GAT CAGC TTTTTCAGGTCCAGT SPH_1360 1261485 - 1260667 - | Cof family protein SPH_1361 1262279 - 1261485 - | Cof family protein smc 1265815 - 1262276 - | chromosome segregation protein SMC rnc 1266504 - 1265806 - | ribonuclease III TERM 1519 1266669 - 1266656 - R 85 -4.5 -5.73978 | opp_overlap 1266656 AGGATAAAGAAAAAA GCCCT ATTA AAGGC TTTTTAGGATGTTTA guaC 1267808 - 1266822 - | guanosine monophosphate reductase SPH_1366 1269299 - 1267911 - | hypothetical protein TERM 1520 1268000 - 1267970 - G 75 -2.6 -5.26119 | gap 1, opp_overlap 1267974, overlap 1267974 1267976 GTGTTAAAAATAAAA GAAAGAGGGGAAA TTGTTT TCTCCCCACTT-C TTCATCAATAATCGC TERM 1521 1267995 - 1267974 - G 79 -5.1 -5.098 | opp_overlap 1267974, overlap 1267970 1267976 TAAAAATAAAAGAAA GAGGGGAAA TTGT TTTCTCCCC ACTTCTTCATCAATA SPH_1367 1271217 - 1269286 - | hypothetical protein TERM 1522 1270200 - 1270215 + g 70 -5.4 -4.40882 | CAAAATTATCTTGTC CTCCAA TCAA TTGGGG TTCTTTTGCTTTCTG TERM 1523 1271369 - 1271331 - R 89 -7.5 -5.29846 | opp_overlap 1271331 1271333 AATTCTAAACAAAAA GCCCAGTGTTAGGAGCT TTAAT ATCTCATAACACTAGAC TTCTTTTTTATCCTA SPH_1371 1272527 - 1272168 - | 3-isopropylmalate dehydratase small subunit TERM 1524 1272405 - 1272417 + g 70 -7.7 -3.75598 | opp_overlap 1272404 TCTAGGCTGAACGAT TGGCA ACA TGCCA TTATTGAGTTCATTA SPH_1372 1272800 - 1272531 - | hypothetical protein leuB 1273834 - 1272797 - | 3-isopropylmalate dehydrogenase SPH_1374 1274940 - 1273846 - | 2-isopropylmalate synthase (Alpha-isopropylmalatesynthase) (Alpha-IPM synthetase) SPH_1375 1275615 - 1274959 - | hypothetical protein TERM 1525 1275644 - 1275625 - R 74 -6.4 -4.36778 | opp_overlap 1275625 AAACATAAGTGAAAA CTGCTACC CAAA GCTAGCAG TTCCTTTCTATTTTT SPH_1376 1276291 - 1275659 - | copper homeostasis protein CutC TERM 1526 1275863 - 1275879 + g 70 -9.5 -2.55253 | ACGAGTGACACCGGC TTGACTG AGC CAGTCAA TAGCTTCCAGTTGAT SPH_1377 1276743 - 1276384 - | hypothetical protein TERM 1527 1276843 - 1276817 - R 89 -8.7 -4.41895 | opp_overlap 1276817 1276814 AAGTTCTAACCAAAA GGAGCCTGAAA TTTAC TTTCGGGCCCC TCCTCTTATTTAATC topA 1278936 - 1276849 - | DNA topoisomerase I TERM 1528 1278225 - 1278199 - G 77 -8 -4.19817 | opp_overlap 1278199 1278213 1278218, overlap 1278220 CTGATCTACTGAAAA GTCTTTACTCGT CAG ACGAGACAAGAC TTCCTTGACTTCGTC TERM 1529 1279042 - 1279027 - R 75 -4.8 -4.92791 | TATAATAGAAGAAAA GTTTTA TACT TAAAAC CTCAGTCTTCCTTTG SPH_1379 1279309 - 1279103 - | hypothetical protein SPH_1381 1280342 - 1280223 - | hypothetical protein TERM 1530 1280746 - 1280730 - R 93 -9.5 -4.44548 | opp_overlap 1280729 1280728 TATACTCAATGAAAA TCAAAGC ACT GCTTTGA GGTTGTAGATAAGAC TERM 1531 1280879 - 1280925 + r 91 -12.6 -3.33315 | opp_overlap 1280884, overlap 1280884 ACTAATCCACTTAGA AAAAACGCATATTATCAAGTGT TAA AAACTTGCTAATATGCGTTTTA TTATGGAAATGTTGG TERM 1532 1280920 - 1280884 - R 100 -12.5 -5.28176 | opp_overlap 1280884 1280879 TCCACTTAGAAAAAA CGCATATTATCAAGTGT TAA AAACTTGCTAATATGCG TTTTATTATGGAAAT TERM 1533 1280884 - 1280920 + r 100 -12.5 -4.77567 | opp_overlap 1280884, overlap 1280879 TCCACTTAGAAAAAA CGCATATTATCAAGTGT TAA AAACTTGCTAATATGCG TTTTATTATGGAAAT dprA 1281842 - 1280994 - | DNA protecting protein DprA TERM 1534 1281938 - 1281917 - R 85 -4.4 -5.59502 | TAAAAAATCAAAAAA CATCCGAC TATTTT GCCAGATG TTGGAATCTTTAATT SPH_1383 1282637 - 1281948 - | LicC-like protein SPH_1384 1283527 - 1282649 - | LicB-like protein SPH_1385 1284386 - 1283517 - | choline kinase SPH_1386 1285425 - 1284403 - | xylitol dehydrogenase SPH_1387 1286137 - 1285430 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TERM 1535 1286382 - 1286370 - H 75 -4.9 -4.86731 | opp_overlap 1286370 TTTCCTTAAAGAAAA CTTAA AAC TTAAG ATTTGAAACTTCAAA SPH_1388 1286472 - 1287959 + | virulence factor MviN family protein TERM 1536 1288599 - 1288589 - g 70 -5.4 -4.48175 | AAAATTTAAGGAAAA GGAA GTC TTCC CAAGTGGTACCTTTG SPH_1389 1287969 - 1288772 + | required for phosphorylcholine incorporation in teichoic and lipoteichoic acids TERM 1537 1289666 - 1289716 + T 100 -30.4 -3.08776 | opp_overlap 1289666 1289671, overlap 1289671 TACATATTCCCACAA TAAAACGCATCATATCAAGGTTTT TGA AAAACCTTGATATGATGCGTTTTA TAATTTTAAAGACTT TERM 1538 1289716 - 1289666 - T 100 -30.4 -3.32819 | opp_overlap 1289666 1289671, overlap 1289671 TACATATTCCCACAA TAAAACGCATCATATCAAGGTTTT TGA AAAACCTTGATATGATGCGTTTTA TAATTTTAAAGACTT TERM 1539 1289671 - 1289711 + T 100 -25.9 -4.67635 | opp_overlap 1289671 1289666, overlap 1289666 ATTCCCACAATAAAA CGCATCATATCAAGGTTTT TGA AAAACCTTGATATGATGCG TTTTATAATTTTAAA TERM 1540 1289711 - 1289671 - T 100 -25.9 -4.77567 | opp_overlap 1289666 1289671, overlap 1289666 ATTCCCACAATAAAA CGCATCATATCAAGGTTTT TGA AAAACCTTGATATGATGCG TTTTATAATTTTAAA carB 1293033 - 1289857 - | carbamoyl-phosphate synthase, large subunit carA 1294425 - 1293346 - | carbamoyl-phosphate synthase, small subunit TERM 1541 1293933 - 1293917 - G 72 -8.7 -3.58522 | overlap 1293922 AGCACCACGCTCAAA CCAACTC CTG GAGCTGG ATAAGACGTTTTAGT TERM 1542 1294442 - 1294457 + r 71 -6.8 -4.20712 | overlap 1294452 TTTTCACCTCTCGTG GACGCT CACT GGCGTC TTTTAACGTCTTGTG pyrB 1295398 - 1294475 - | aspartate carbamoyltransferase SPH_1394 1295938 - 1295417 - | PyrR bifunctional protein TERM 1543 1295979 - 1295960 - R 100 -10.8 -5.26119 | opp_overlap 1295955, overlap 1295971 CCTCCAAAAAGAAAA GTCTCCTT AAAC AAGGAGAC TTGAAATTTATAGCC nth 1296778 - 1296149 - | endonuclease III TERM 1544 1296742 - 1296760 + g 86 -4.5 -5.40072 | overlap 1296745 GGGCAATGATTTCTT CTAGCAC CTTTC GTGCTCG TTTTTTTGACAAGAC SPH_1396 1297320 - 1296778 - | hypothetical protein SPH_1397 1297490 - 1297807 + | BlpT protein, fusion TERM 1545 1297900 - 1297939 + F 76 -4.6 -5.20633 | gap 1, opp_overlap 1297899 1297904 1297913, overlap 1297904 GGAGACATGAACAAC TAAG-TCTATCAAATAAAG AAC CTTTATTTAGTAGATCTTG TTTTTGTCTCTTTTT TERM 1546 1297904 - 1297934 + F 73 -7.8 -3.89226 | opp_overlap 1297904 1297899 1297913, overlap 1297900 ACATGAACAACTAAG TCTATCAAATAAAG AAC CTTTATTTAGTAGA TCTTGTTTTTGTCTC TERM 1547 1298016 - 1298037 + F 95 -8.8 -5.19328 | TGACATAGACTTTGG GCTCTACT AGGTAA AGTAGAGC TTTTTGTTATGCACT TERM 1548 1298774 - 1298758 - g 78 -7.3 -4.41616 | overlap 1298739 1298766 ATTTTGCCAAACAAA GTCAGCA AGC TGCTAAC AACCAAAGAGCCTAC SPH_1398 1298046 - 1299605 + | ABC transporter, ATP-binding protein TERM 1549 1299681 - 1299716 + T 100 -12.1 -4.7416 | opp_overlap 1299681 CTTCCCATAGTAAAA CGCATAATATCAAGT TTTCAC ACCTGATATTATGCG TTTTTCAGATTTTAA TERM 1550 1299716 - 1299681 - T 100 -14.3 -4.34402 | opp_overlap 1299681 CTTCCCATAGTAAAA CGCATAATATCAAGT TTTCAC ACCTGATATTATGCG TTTTTCAGATTTTAA SPH_1399 1300653 - 1299754 - | putative protease HtpX-like protein TERM 1551 1299791 - 1299828 + g 77 -7.7 -4.19336 | opp_overlap 1299791 1299808, overlap 1299781 ATCCGTTCTGAGATA GGTGGGTGGGTATAAAA GAGT TTTTGGAACCCCCCACC TTTCTTGGGATCATT SPH_1400 1301215 - 1300655 - | cytoplasmic membrane protein gidB 1301309 - 1302022 + | methyltransferase GidB TERM 1552 1302213 - 1302233 + T 79 -8.3 -3.96841 | opp_overlap 1302213 1302217 CATTTGTACTACTAA GCAACAAGA CGC TCCTGTTGC TTCTCTTTATTCAAG TERM 1553 1302233 - 1302213 - T 83 -10.5 -3.21416 | opp_overlap 1302213, overlap 1302217 CATTTGTACTACTAA GCAACAAGA CGC TCCTGTTGC TTCTCTTTATTCAAG SPH_1402 1303426 - 1302209 - | transposase from transposon (integrase) TERM 1554 1303170 - 1303182 + g 71 -4.1 -4.93877 | TGTTTTGCGTAAAGC TGGCA GAG TGTCA TTTTCTTTCCTACAA SPH_1403 1303711 - 1303508 - | hypothetical protein SPH_1404 1303695 - 1303946 + | hypothetical protein TERM 1555 1304166 - 1304113 - TR 72 -6.1 -4.44667 | gap 1, opp_overlap 1304113, overlap 1304109 1304114 TGGTGGAATAACAAA CCTCCCTGTTCG-GGAAGCGTG GAATGGTTTAG CACGCTTCCACGAAAGGAGAGA GGATATTACTTAATT SPH_1405 1304402 - 1304172 - | hypothetical protein SPH_1406 1304821 - 1304399 - | RNA polymerase sigma-70 region 4 family protein TERM 1556 1304996 - 1304963 - R 100 -9.1 -5.1615 | opp_overlap 1304963 1304958 TGAATAGCCAAAAAA GCATATAAACAGA TTTATTTC TCTGTTTACATGC TTCTGTTATTCTATC TERM 1557 1304963 - 1304996 + r 70 -6.9 -3.88971 | opp_overlap 1304963, overlap 1304958 TGAATAGCCAAAAAA GCATATAAACAGA TTTATTTC TCTGTTTACATGC TTCTGTTATTCTATC TERM 1558 1305039 - 1305028 - R 72 -5.8 -4.44245 | ATATGATTTATAAAA CCAC ATTG GTGG ACGTACTTATCTATT SPH_1407 1305196 - 1305050 - | hypothetical protein TERM 1559 1305480 - 1305470 - g 72 -4.6 -4.71418 | AATATTGAAAATAAA GGGC AAC ACCC CAGCATACAAGTTCT SPH_1408 1305326 - 1305679 + | transcriptional regulator, putative TERM 1560 1305701 - 1305754 + T 100 -13.5 -3.72141 | gap 1, opp_overlap 1305689 1305706 1305718, overlap 1305702 1305703 1305718 GAATCCATACATAAC GG-AAAGAGCCGATAAAATGAGATTG TAT TAATCTCATTTTATCGGCTCTGCGTC TTTGCGTCTGGCTCT TERM 1561 1305702 - 1305752 + T 100 -15 -3.4404 | opp_overlap 1305689 1305706 1305718, overlap 1305701 1305703 1305718 AATCCATACATAACG GAAAGAGCCGATAAAATGAGATTG TAT TAATCTCATTTTATCGGCTCTGCG TCTTTGCGTCTGGCT TERM 1562 1305703 - 1305751 + T 100 -18.5 -2.65942 | opp_overlap 1305706 1305718, overlap 1305702 1305701 1305718 ATCCATACATAACGG AAAGAGCCGATAAAATGAGATTG TAT TAATCTCATTTTATCGGCTCTGC GTCTTTGCGTCTGGC TERM 1563 1305748 - 1305706 - T 100 -23.9 -3.84394 | opp_overlap 1305703 1305702 1305701 1305718, overlap 1305718 CATACATAACGGAAA GAGCCGATAAAATGAGATT GTATT AATCTCATTTTATCGGCTC TGCGTCTTTGCGTCT TERM 1564 1305736 - 1305718 - T 72 -6.1 -4.43221 | opp_overlap 1305703 1305702 1305701 1305718, overlap 1305706 AAAGAGCCGATAAAA TGAGATT GTATT AATCTCA TTTTATCGGCTCTGC TERM 1565 1305718 - 1305736 + T 74 -6.8 -4.41548 | opp_overlap 1305718 1305706, overlap 1305703 1305702 1305701 AAAGAGCCGATAAAA TGAGATTG TAT TAATCTCA TTTTATCGGCTCTGC SPH_1409 1307944 - 1306025 - | tetracycline resistance protein TERM 1566 1306900 - 1306952 + g 75 -7.7 -4.12532 | overlap 1306901 1306904 TGCTCGGTTCAACAG TCGTTTGCAGCAGAGGGAGGGGATT TTC AATTCTCTCTCTCTGTGGCAATAGC TTTGTATCTCCAAGA TERM 1567 1306901 - 1306951 + g 81 -11.2 -3.07198 | overlap 1306900 1306904 GCTCGGTTCAACAGT CGTTTGCAGCAGAGGGAGGGGATT TTC AATTCTCTCTCTCTGTGGCAATAG CTTTGTATCTCCAAG TERM 1568 1306904 - 1306948 + g 100 -15.9 -2.74987 | overlap 1306901 1306900 CGGTTCAACAGTCGT TTGCAGCAGAGGGAGGGGATT TTC AATTCTCTCTCTCTGTGGCAA TAGCTTTGTATCTCC TERM 1569 1307977 - 1307966 - R 75 -7.2 -4.18018 | TTCCTCCATTCAAAA GCCC AAAA GGGC ATAAAAATCCCAGTG SPH_1410 1308076 - 1307960 - | tetracycline resistance determinant leader peptide TERM 1570 1308014 - 1307985 - G 100 -14.5 -4.90296 | opp_overlap 1307985 AAAAGGGCATAAAAA TCCCAGTGATAAA TACT CTTATCACTGGGA TTTTTATGCATAACC TERM 1571 1307985 - 1308014 + g 100 -13.8 -4.87665 | opp_overlap 1307985 AAAAGGGCATAAAAA TCCCAGTGATAA ATACTC TTATCACTGGGA TTTTTATGCATAACC SPH_1411 1309238 - 1308321 - | conjugative transposon protein SPH_1412 1310254 - 1309253 - | NLP/P60 family protein SPH_1413 1312428 - 1310251 - | conjugative transposon membrane protein TERM 1572 1310592 - 1310616 + g 73 -8.7 -3.6707 | opp_overlap 1310592 TCGGTCTTTCATGAA CAGAAGAAGCA GGC TGTTTTTTCTG TTTGACCTGTTCCAT TERM 1573 1310628 - 1310654 + g 75 -5.8 -4.7339 | TCTGTTTGACCTGTT CCATTTCAGAGC GAC GCTTCGCAATGG TTTTTCGCCTTTGTT SPH_1414 1314878 - 1312431 - | conjugative transposon protein SPH_1415 1315368 - 1314862 - | conjugative transposon membrane protein TERM 1574 1315106 - 1315078 - GR 93 -11.7 -3.91434 | opp_overlap 1315069 AAAGTATTTGAGAAA TGCTCCCTCTATC ATG GAAAGAGGGGGCA AGTTGCCAAGTATCA TERM 1575 1315305 - 1315278 - GR 90 -7.1 -5.24129 | gap 1, overlap 1315280 TCCTTTCATAAAAAA TA-GGGGTAGCT GATTG AGCCACCCCGTA AAATAGAAAATCTGC TERM 1576 1315302 - 1315280 - GR 100 -11.3 -4.25873 | overlap 1315278 CTTTCATAAAAAATA GGGGTAGCT GATTG AGCCACCCC GTAAAATAGAAAATC TERM 1577 1315341 - 1315316 - GR 82 -6.2 -4.89567 | CCGTAAAATAGAAAA TCTGCCAGTA GTAATG TACCGACAGA TTTAATAGACGATTT SPH_1416 1315840 - 1315343 - | conjugative transposon protein TERM 1578 1315900 - 1315950 + r 88 -7 -4.86731 | ACTTCGTTTGGTGTA CCATTCCTTTGCGGAACATAAG AAAACCA CTTATATTCCACAAAAGAACGG TTTTATTTAAGCACC SPH_1417 1316178 - 1315957 - | hypothetical protein TERM 1579 1316244 - 1316272 + H 100 -9.7 -5.60993 | TTGGGGTATACACTT TCTGGTATGGA TAGAGAT TCCATGCCAGA TTTTTTTATACAAAA TERM 1580 1316308 - 1316290 - H 85 -6.7 -5.36441 | opp_overlap 1316290 TTTTTATACAAAAAA GAGGACA TTTGC TGTCCCC TCGTTATACAATCAA TERM 1581 1316763 - 1316781 + G 70 -8.9 -3.14683 | overlap 1316779 ATTGCTGAAATGTGT CACTGCT CTCCT AGCAGTG TTCGTCGAACAATCT SPH_1418 1316358 - 1317605 + | transposase TERM 1582 1317636 - 1317611 - T 93 -6.9 -5.40072 | TTTTTCGTAAAAAAA TACCCCCTACA TTTT CGTAGGAAGTA TTTTTAGTCAACCAT SPH_1419 1317917 - 1317726 - | hypothetical protein SPH_1420 1318599 - 1317862 - | rRNA adenine N-6-methyltransferase (macrolide-lincosamide-streptogramin B resistance protein) TERM 1583 1319037 - 1319071 + r 100 -17.4 -6.22691 | ATTATATCTTTTTTT GGATATCTGTCAACTG GTA TGGTTGACAGATATCC TTTTTTTTGTTGTTA SPH_1422 1320275 - 1319046 - | Cro/CI family transcriptional regulator TERM 1584 1319714 - 1319734 + g 70 -8.3 -3.34404 | opp_overlap 1319716, overlap 1319688 1319712 ACTTTTCAGTGAGTA CAGGGATAT TTA AAATCCCTG TCTTATCGTTAATGG TERM 1585 1320392 - 1320412 + r 80 -10.4 -3.09834 | CCTGTCGATTTGTAC CCCCCTGT TAGAT ACGGGGGG TTAAGTGCTGGCGTG TERM 1586 1320447 - 1320505 + r 80 -10.3 -3.11966 | gap 2, opp_overlap 1320451, overlap 1320454 1320456 TTGCCACACCAGCCA GCAAGATCAGTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGACTG-TC-TGC TGTTGGATAACTTTT TERM 1587 1320502 - 1320451 - R 91 -13 -3.1994 | gap 1, opp_overlap 1320447 1320454 1320456 CACACCAGCCAGCAA GATCAGTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGACTG-TC TGCTGTTGGATAACT TERM 1588 1320454 - 1320500 + r 89 -13.6 -2.92522 | opp_overlap 1320451, overlap 1320447 1320456 ACCAGCCAGCAAGAT CAGTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGACTG TCTGCTGTTGGATAA TERM 1589 1320456 - 1320498 + r 80 -10.4 -3.0119 | opp_overlap 1320451, overlap 1320454 1320447 CAGCCAGCAAGATCA GTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGAC TGTCTGCTGTTGGAT SPH_1423 1321838 - 1320453 - | ftsk/SpoIIIE family protein SPH_1424 1322250 - 1321867 - | conjugative transposon protein SPH_1425 1322583 - 1322269 - | conjugative transposon protein SPH_1426 1322725 - 1322606 - | hypothetical protein TERM 1590 1322740 - 1322714 - G 100 -10.3 -5.41746 | AATCGGGTAAAAAAA TAGACACCTCA TTTTT TGAAGTGTCTA CCTATTAAATATTCA TERM 1591 1322992 - 1322978 - H 81 -5.8 -5.00884 | AGGCTCGGGAAAAAA TGATTT ACA AAATCA ACCTCGCTCTTTTAT TERM 1592 1323016 - 1323052 + H 76 -9.7 -2.87468 | opp_overlap 1323027, overlap 1323019 1323027 CTTTTATTTCTAGGC TCGGGAAAAAATGATTT ACA AAATCATTTTTTTCTGC TATACTATCCTAAGC TERM 1593 1323019 - 1323049 + H 84 -12.2 -2.6891 | opp_overlap 1323027, overlap 1323016 1323027 TTATTTCTAGGCTCG GGAAAAAATGATTT ACA AAATCATTTTTTTC TGCTATACTATCCTA TERM 1594 1323027 - 1323041 + H 88 -5.8 -5.69473 | opp_overlap 1323027, overlap 1323019 1323016 AGGCTCGGGAAAAAA TGATTT ACA AAATCA TTTTTTTCTGCTATA TERM 1595 1323041 - 1323027 - H 81 -5.8 -5.00884 | opp_overlap 1323019 1323016 1323027 AGGCTCGGGAAAAAA TGATTT ACA AAATCA TTTTTTTCTGCTATA TERM 1596 1323159 - 1323186 + H 71 -3.4 -5.14563 | opp_overlap 1323180, overlap 1323184 GAAGTCTTACTCTGA GGGCCTATTGCT GTAA AATAATGGGCTC TTTTTTGATGCCCAA uraA 1323215 - 1324498 + | uracil permease TERM 1597 1324520 - 1324547 + T 87 -6.3 -5.42164 | opp_overlap 1324520 1324521, overlap 1324521 AAATACATCGAAAAA CGAGCATTTCC AACTAC GGAAGTGCTCA TTTTTCTTCTTTCTA TERM 1598 1324547 - 1324520 - T 83 -7 -4.75356 | opp_overlap 1324520 1324521, overlap 1324521 AAATACATCGAAAAA CGAGCATTTCCA ACTA CGGAAGTGCTCA TTTTTCTTCTTTCTA TERM 1599 1324521 - 1324546 + T 83 -9.8 -3.82859 | opp_overlap 1324520 1324521, overlap 1324520 AATACATCGAAAAAC GAGCATTTCC AACTAC GGAAGTGCTC ATTTTTCTTCTTTCT TERM 1600 1324546 - 1324521 - T 72 -8.3 -3.43587 | opp_overlap 1324521 1324520, overlap 1324520 AATACATCGAAAAAC GAGCATTTCCA ACTA CGGAAGTGCTC ATTTTTCTTCTTTCT TERM 1601 1324587 - 1324568 - T 100 -10 -5.00616 | opp_overlap 1324568 CTTCTTTCTAAAAAA GGAAAGCC CTGC GGCCTTCC TTTGTCTTACTTGCG TERM 1602 1324568 - 1324587 + T 81 -7.8 -4.2772 | opp_overlap 1324568 CTTCTTTCTAAAAAA GGAAAGCC CTGC GGCCTTCC TTTGTCTTACTTGCG ffh 1326165 - 1324594 - | signal recognition particle protein SPH_1429 1326509 - 1326177 - | putative helix-turn-helix protein SPH_1430 1326977 - 1326600 - | hypothetical protein SPH_1431 1327049 - 1328353 + | HD superfamily phosphohydrolase SPH_1432 1328366 - 1329172 + | phosphatase YidA SPH_1433 1329215 - 1330213 + | SAP domain-containing protein TERM 1603 1330328 - 1330292 - T 88 -7.6 -4.89477 | gap 2, opp_overlap 1330292 1330289 TTTTCAATAATAAAA CGCATAATATTATGGAGA CAA TCCCC-TA-TATTATGCG TTCTTTTAATATCAA TERM 1604 1330479 - 1330462 - T 100 -9.9 -4.99035 | opp_overlap 1330462 GGAGCTAGATAAAAA CTCTGCT GAAA AGCAGAG TTTTTTAGTCGAATT TERM 1605 1330462 - 1330479 + T 100 -9.9 -5.16237 | opp_overlap 1330462 GGAGCTAGATAAAAA CTCTGCT GAAA AGCAGAG TTTTTTAGTCGAATT rplS 1330840 - 1330493 - | ribosomal protein L19 SPH_1436 1331288 - 1330959 - | hypothetical protein SPH_1437 1331656 - 1331282 - | hypothetical protein SPH_1438 1331919 - 1331653 - | chorismate mutase TERM 1606 1331879 - 1331891 + g 71 -6.3 -4.16016 | TTGACAATTTGGTCG TCGAT TTG ATCGA TTTCTTGACGAATAA TERM 1607 1332025 - 1332001 - R 84 -6.5 -5.18726 | opp_overlap 1332001 TCTCGATAAGAAAAA TGCACTGAT TGATTAC ATCAGCGCA CTTTTATGCTTATCC SPH_1439 1332478 - 1332035 - | flavodoxin TERM 1608 1332558 - 1332541 - H 78 -2.1 -5.61881 | gap 1 TTTTAAAAATAAAAA TTC-TTGT GCT ACAATGAA ATGAGAAAGAATTGA TERM 1609 1332748 - 1332724 - g 91 -7.9 -5.24531 | opp_overlap 1332735, overlap 1332725 ATTTCCCAGAAAAAA CCATCAAAGCC GTC GGTTTTGATGA ACCAACTCTTACTTG TERM 1610 1332747 - 1332725 - g 76 -9.2 -3.73995 | opp_overlap 1332735, overlap 1332724 TTTCCCAGAAAAAAC CATCAAAGCC GTC GGTTTTGATG AACCAACTCTTACTT SPH_1440 1332582 - 1333517 + | DHH subfamily 1 protein TERM 1611 1333640 - 1333622 - g 82 -3.9 -5.46698 | TGCAAAATGAAAAAA GATATCC ATCCA GAATATC GCCCAGTTGTCTTCA rpmE 1333613 - 1333855 + | ribosomal protein L31 TERM 1612 1333864 - 1333881 + T 95 -6.3 -5.80003 | opp_overlap 1333862 1333864 CAAATAATGATAAGA GAACAGT TTCG GCTGTTC TTTTTTGTTTCTTGA SPH_1442 1334400 - 1333912 - | hypothetical protein SPH_1443 1334781 - 1334479 - | hypothetical protein SPH_1444 1335056 - 1334772 - | hypothetical protein SPH_1445 1335459 - 1335193 - | transposase TERM 1613 1336145 - 1336157 + H 80 -2.7 -5.64421 | opp_overlap 1336141, overlap 1336141 AATTGAAAGAATTTT TAGAA AAT TTCTG TTTTTTCTTTACAGT SPH_1446 1336233 - 1337579 + | NAD(p)-specific glutamate dehydrogenase TERM 1614 1337595 - 1337617 + T 95 -8.5 -4.90013 | GATTTATTTGCTTAA TCCTCAATC ACTAC GATTGGGGA TTTTTAGTTGAGTTA TERM 1615 1337930 - 1337909 - T 100 -7.3 -5.77734 | opp_overlap 1337909 1337910, overlap 1337910 AAACAAAAAGAAAAA CCGCTACTC CTAA GAATAGCGA TTTAATCATGTTTTT TERM 1616 1337929 - 1337910 - T 82 -8.6 -4.0115 | opp_overlap 1337910 1337909, overlap 1337909 AACAAAAAGAAAAAC CGCTACTC CTAA GAATAGCG ATTTAATCATGTTTT SPH_1447 1338245 - 1338075 - | hypothetical protein SPH_1448 1338386 - 1338258 - | hypothetical protein TERM 1617 1338910 - 1338952 + H 88 -7.2 -4.98531 | overlap 1338936 ATCCGTAATCCGAAG CGTTTACGATGATTTCGATA GGT TGTTGAAAACATTTTAAACG TTTTTACTTTGGCAA SPH_1450 1339441 - 1340037 + | transposase TERM 1618 1340183 - 1340209 + T 80 -9.4 -3.53563 | opp_overlap 1340183 AGTCGTACCAAGAAA CCCCACCAAGAT AAA AACTTAGTGGGG TTTGGCGGGGAATAT TERM 1619 1340209 - 1340183 - T 100 -11.6 -4.2461 | opp_overlap 1340183 AGTCGTACCAAGAAA CCCCACCAAGAT AAA AACTTAGTGGGG TTTGGCGGGGAATAT TERM 1620 1340305 - 1340279 - T 93 -10.2 -4.0031 | opp_overlap 1340279 1340277 ACTCTCATTAAACAA GAGTTCCGCAAT CAA ATTGCGATACTC TATTATTTAAAGGTA TERM 1621 1340279 - 1340305 + T 73 -8 -3.55202 | opp_overlap 1340279, overlap 1340277 ACTCTCATTAAACAA GAGTTCCGCAAT CAA ATTGCGATACTC TATTATTTAAAGGTA SPH_1451 1340604 - 1340308 - | hypothetical protein TERM 1622 1340543 - 1340559 + g 76 -4.5 -5.10029 | overlap 1340549 TTCTCTATATCAATT GGTTTTT CTA AAAAATC TTTTTTCAGATTAAT SPH_1452 1340760 - 1340617 - | hypothetical protein SPH_1453 1341049 - 1340762 - | hypothetical protein TERM 1623 1341586 - 1341568 - H 100 -7.4 -5.79595 | TCGTAAAAGAAAAAA GCAGTACA AGA TGAACTGC ACCCCAAAAGTTAGA TERM 1624 1341586 - 1341626 + H 100 -9.2 -4.78839 | GTACAAGATGAACTG CACCCCAAAAGTTAGA CAGAAAAAA TCTACTTTTTGGGGTG TTTTATTATGAAATT SPH_1454 1341619 - 1342137 + | transposase subfamily protein TERM 1625 1342976 - 1342944 - g 100 -12.2 -4.76874 | opp_overlap 1342947 AAGATAAAACTAAAA GGACTTAGTCCTGT GCAAT ACAGAACTAAATCC TTCGGATAAATTAAT SPH_1455 1342146 - 1342985 + | integrase core subunit TERM 1626 1343532 - 1343503 - T 93 -8 -5.45652 | gap 1, opp_overlap 1343503 ACTGTCAATAAAAAA GCTTAGA-AAGGC TTACC GCCTTATCCAAGC TGATATTGGTTCATC SPH_1457 1344182 - 1343571 - | V-type ATPase, D subunit TERM 1627 1343687 - 1343698 + g 93 -5.8 -5.5762 | ATTCTAATCCATTTA CACG TCTA CGTG TTTTTTCTATTTCAT SPH_1458 1345590 - 1344205 - | V-type ATP synthase beta chain (V-type ATPase subunitB) TERM 1628 1344988 - 1345014 + g 70 -8.1 -3.62775 | overlap 1344989 GATCGCTCCTGTTTT TCTGAGTTCTT CCATA AAGAACTCAGC TTCTTCAAAAGTAAT TERM 1629 1344989 - 1345013 + g 80 -11.6 -2.77344 | overlap 1344988 ATCGCTCCTGTTTTT CTGAGTTCTT CCATA AAGAACTCAG CTTCTTCAAAAGTAA SPH_1459 1347366 - 1345591 - | V-type ATP synthase alpha chain (V-type ATPase subunitA) TERM 1630 1346195 - 1346175 - G 72 -8.3 -3.53761 | opp_overlap 1346191 TAACTGGTTCTGAAA TATCTCCAC CGG GTGGCGATA CAGCTCCAATAGCAG SPH_1460 1347749 - 1347429 - | ATP synthase (F/14-kDa) subunit SPH_1461 1348746 - 1347739 - | ATP synthase (C/AC39) subunit TERM 1631 1347946 - 1347934 - G 70 -2.7 -5.06585 | TAAATCACATAAAAA TTCTA ACT CAGAA GATGAAATTGTTGCG SPH_1462 1349392 - 1348811 - | V-type sodium ATP synthase, subunit E SPH_1463 1349902 - 1349426 - | V-type sodium ATP synthase subunit K (Na(+)-translocating ATPase subunit K) (Sodium ATPase proteolipid component) TERM 1632 1349473 - 1349463 - G 73 -5.4 -4.5265 | AATGATACGACAAAA GCAA GAA TTGC ATAGGTTTCTACCAT TERM 1633 1349788 - 1349769 - G 73 -8.6 -3.72576 | gap 1 TGTTCTTTCAGTAAA GCTGCGGCA GAT TGCC-CAGC CTTACCAACTCCATA SPH_1464 1351909 - 1349918 - | ATP synthase subunit I SPH_1465 1352222 - 1351899 - | hypothetical protein SPH_1466 1353137 - 1352247 - | ROK family protein TERM 1634 1353177 - 1353214 + r 83 -7 -4.69214 | opp_overlap 1353183, overlap 1353179 1353181 1353183 TCATTACTTTTTGAT AAAAAATGGGACTGGG CATTAT CCCAGTCCCATCTCTA TTTCTTTATTCAATG TERM 1635 1353179 - 1353212 + r 87 -9.6 -3.94772 | opp_overlap 1353183, overlap 1353177 1353181 1353183 ATTACTTTTTGATAA AAAATGGGACTGGG CATTAT CCCAGTCCCATCTC TATTTCTTTATTCAA TERM 1636 1353181 - 1353210 + r 91 -12.2 -3.54574 | opp_overlap 1353183, overlap 1353179 1353177 1353183 TACTTTTTGATAAAA AATGGGACTGGG CATTAT CCCAGTCCCATC TCTATTTCTTTATTC TERM 1637 1353208 - 1353183 - R 100 -14.8 -5.24129 | opp_overlap 1353181 1353179 1353177 1353183 CTTTTTGATAAAAAA TGGGACTGGG CATTAT CCCAGTCCCA TCTCTATTTCTTTAT TERM 1638 1353183 - 1353208 + r 95 -14.8 -3.31566 | opp_overlap 1353183, overlap 1353181 1353179 1353177 CTTTTTGATAAAAAA TGGGACTGGG CATTAT CCCAGTCCCA TCTCTATTTCTTTAT SPH_1467 1354403 - 1353294 - | putative oxidoreductase YjhC SPH_1468 1356665 - 1354443 - | sialidase B (neuraminidase B) TERM 1639 1355507 - 1355526 + g 74 -5 -4.79949 | CAGGCATCACATCAG CAAACATG AGTA CTTGTTTG TTCTTTTTTTCAACA TERM 1640 1356381 - 1356393 + g 77 -4.9 -4.89054 | ATTTTCTCCGCCCCC TGTTA AAG TAACA TTATTTTTTTCTAAG TERM 1641 1356526 - 1356549 + g 100 -14 -3.95424 | overlap 1356543 TCCGAAATCGGAGTC GTTGGTGCAA CAGG TTGCACCAAC TTTGGTGTTGATACT SPH_1469 1357125 - 1356667 - | hypothetical protein SPH_1470 1358685 - 1357144 - | sodium:solute symporter family protein TERM 1642 1357866 - 1357882 + g 81 -6.7 -4.75289 | TTGTGAACAACATCT TATTAAG TTT CTTAATA TTTTGTGTTGTAGTA SPH_1471 1359630 - 1358713 - | N-acetylneuraminate lyase SPH_1472 1360356 - 1359655 - | putative N-acetylmannosamine-6-phosphate 2-epimerase (ManNAc-6-P epimerase) SPH_1473 1361170 - 1360361 - | RpiR family transcriptional regulator SPH_1474 1362160 - 1361573 - | CAAX amino protease TERM 1643 1361861 - 1361849 - G 71 -4.1 -4.86293 | overlap 1361850 CAATAAAAATGAAAA CCAAG GAA CTTGA TGTTGAAGGCCAATT SPH_1475 1362396 - 1362163 - | hypothetical protein TERM 1644 1362538 - 1362511 - R 100 -9.2 -4.8667 | opp_overlap 1362511 TACAGTTGACAAAAA GACAAACCAGCC TAAT GACTAGCTTGTC TTCAATCAAGAGAGG SPH_1476 1362789 - 1362652 - | hypothetical protein SPH_1477 1364241 - 1362922 - | hypothetical protein SPH_1478 1364984 - 1364244 - | ABC transporter, ATP-binding protein TERM 1645 1364614 - 1364624 + g 88 -2.6 -5.9873 | AAGTTTTCTACATTT TTAA TAG TTAA TTTTTTTTGTGATAA SPH_1479 1365619 - 1364999 - | drug efflux ABC transporter, ATP-binding/permease protein TERM 1646 1365202 - 1365213 + g 100 -4.4 -5.93252 | opp_overlap 1365198 TTCTAATCAGAGCTC TAGC TAAA GCTA TTTTTTGTTTTTGAC TERM 1647 1366673 - 1366689 + r 78 -2.2 -5.61913 | opp_overlap 1366675, overlap 1366675 GCATTATCTATAATA AAGGGA AAGTC TCCCTG TTTTTTATCTTTCTT TERM 1648 1367414 - 1367392 - R 100 -14.2 -5.50723 | TTATTAAAATAAAAA GGGAGAATCC TTT GGATTCCCCC CATATAAGCACTGAC SPH_1481 1367638 - 1367501 - | hypothetical protein SPH_1482 1368427 - 1367840 - | CAAX amino protease TERM 1649 1368128 - 1368116 - G 71 -4.1 -4.86293 | overlap 1368117 1368121 CAATAAAAATGAAAA CCAAG GAA CTTGA TGTTGAAGTCCAATT TERM 1650 1368477 - 1368452 - H 100 -13.4 -5.88197 | CGAAACACAAAAAAA GGGGTAGACA ATCTAG TGTCTACCCC CGAAAGTTTATTAAA TERM 1651 1368500 - 1368552 + H 73 -4.5 -4.96848 | opp_overlap 1368502, overlap 1368502 TTATTAAAACAAAAA TG-GCTCTATAATATTTGTAGTGGG TAAAT CCC-CTATGGATATTATGGAGCTTA TTTTTGTGTAGAAAA TERM 1652 1368502 - 1368549 + H 100 -10.9 -4.58943 | gap 1, opp_overlap 1368502, overlap 1368500 ATTAAAACAAAAATG GCTCTATAATATTTGTAGTGGG TAAAT CCC-CTATGGATATTATGGAGC TTATTTTTGTGTAGA TERM 1653 1369482 - 1369463 - g 70 -9.4 -2.64981 | opp_overlap 1369461 ATAGTCGTAAACTCA GCGATAAA CGTT TTTATCGC CCTACTTTTCGCATG TERM 1654 1369871 - 1369849 - g 93 -9.2 -5.27779 | opp_overlap 1369853 CTGAATATCAAAAAA GAAAGGACGA AAT TTGTCCTTTC TCAAGCTTAGCTTTT SPH_1484 1368625 - 1369881 + | transposase SPH_1483 1370018 - 1369878 - | hypothetical protein TERM 1655 1369947 - 1369923 - G 100 -13 -4.92363 | opp_overlap 1369938, overlap 1369913 AAAGAGCCACAAAAA TCCTGCCAAA GAATT TTTGGCAGGA AACCAAATCAATTTA rplL 1370405 - 1370037 - | ribosomal protein L7/L12 SPH_1486 1370981 - 1370481 - | 50S ribosomal protein L10 TERM 1656 1371055 - 1371036 - R 85 -4.2 -5.61881 | TTTCAAAAAGAAAAA CGCGCCCA AACC TAGACACG AAAGTACAATACGCT TERM 1657 1371128 - 1371140 + r 84 -5.5 -5.41143 | AGTCGAGCTCCCCTA CTGTC TTA GGCAG TTTTTTTAAACCGTA TERM 1658 1371198 - 1371184 - R 70 -4.3 -4.8236 | opp_overlap 1371172 TAGTCAAAAAAAGAA TGCAA GATTT TTGCA AACTTTTTTTAAAAT SPH_1487 1372787 - 1371231 - | chlorohydrolase TERM 1659 1372609 - 1372627 + g 71 -9.6 -2.87931 | overlap 1372592 1372588 1372612 TCAAAACAGTGTTTT GAGCTGAC TTC GTCAGTTC TATCTGCAACCTCAA TERM 1660 1372654 - 1372672 + g 71 -9.6 -2.87931 | overlap 1372637 1372633 1372657 TCAAAACAGTGTTTT GAGCTGAC TTC GTCAGTTC TATCTGCAACCTCAA TERM 1661 1372747 - 1372727 - G 70 -8.3 -3.35996 | opp_overlap 1372744, overlap 1372728 CAGTCTTATCTACAA CCTCAAAGC TGT GCTTTGAGC AACCTACGGCTAGCT TERM 1662 1372746 - 1372728 - G 81 -11.8 -2.61383 | opp_overlap 1372744, overlap 1372727 AGTCTTATCTACAAC CTCAAAGC TGT GCTTTGAG CAACCTACGGCTAGC SPH_1488 1374630 - 1372882 - | ABC transporter, ATP-binding/permease protein TERM 1663 1374467 - 1374453 - G 81 -5.7 -5.03747 | overlap 1374464 AAATCTGCCAAAAAA CTGGT GATGA ACCAG CCACTAGGACTTGGT SPH_1489 1376356 - 1374632 - | ABC transporter, ATP-binding/permease protein TERM 1664 1376386 - 1376411 + r 83 -6.1 -5.18866 | opp_overlap 1376388 1376392, overlap 1376388 CATATTCTAGAAATG AAGAAAGTGGG AAGC CCCACTCTCTG TTTTATTTGTTTAAG TERM 1665 1376388 - 1376409 + r 85 -8.7 -4.20284 | opp_overlap 1376388 1376392, overlap 1376386 TATTCTAGAAATGAA GAAAGTGGG AAGC CCCACTCTC TGTTTTATTTGTTTA TERM 1666 1376409 - 1376388 - R 89 -10.9 -3.61244 | opp_overlap 1376386 1376388, overlap 1376392 TATTCTAGAAATGAA GAAAGTGGG AAGC CCCACTCTC TGTTTTATTTGTTTA TERM 1667 1376405 - 1376392 - R 83 -8.1 -4.42976 | opp_overlap 1376388 1376386, overlap 1376388 CTAGAAATGAAGAAA GTGGG AAGC CCCAC TCTCTGTTTTATTTG SPH_1490 1377352 - 1376414 - | peptide methionine sulfoxide reductase MsrA/msrB TERM 1668 1377441 - 1377453 + r 71 -7.7 -3.58905 | ACCGTATATATGTTA CTGAC TTC GTCAG TTCTATCTGCAACCT SPH_1491 1377571 - 1377419 - | chlorohydrolase TERM 1669 1377530 - 1377512 - G 72 -10.4 -2.61383 | overlap 1377511 AGTTCTATCCACAAC CTCAAAAC ACT GTTTTGAG CAGCCTGCGGCTAGC thrB 1378516 - 1377647 - | homoserine kinase TERM 1670 1378087 - 1378071 - G 70 -9.5 -2.73771 | overlap 1378070 TCACACTCTGGAAAG TCTGCTA CGA TAGCAGA GACTTGCCCTTCAAC SPH_1493 1379804 - 1378518 - | homoserine dehydrogenase (HDH) TERM 1671 1379288 - 1379320 + g 70 -9.1 -3.19668 | overlap 1379315 CGTAAGACCAGCCTT CTTCCACCATCTTGG TCA CCATGAAGTTGGAAG TTCCGTTGACTACTC TERM 1672 1379917 - 1379902 - R 100 -7.6 -5.98675 | opp_overlap 1379902 1379901 TATAAAAAGAAAAAA CGAATC AGAC GATTCG CTCTTCTTAAAATCT SPH_1494 1380692 - 1379955 - | adapter protein MecA TERM 1673 1380839 - 1380875 + r 100 -15.3 -3.35996 | opp_overlap 1380840, overlap 1380840 1380850 CAGACAGATAGAAAA AGCCTTCAAAATCGGCT AAG AGCCGATTTTGAAGACC TTATACATCAGAATA TERM 1674 1380840 - 1380874 + r 100 -18.8 -2.61383 | opp_overlap 1380840, overlap 1380839 1380850 AGACAGATAGAAAAA GCCTTCAAAATCGGCT AAG AGCCGATTTTGAAGAC CTTATACATCAGAAT TERM 1675 1380874 - 1380840 - R 100 -21 -5.08178 | opp_overlap 1380840 1380839 1380850 AGACAGATAGAAAAA GCCTTCAAAATCGGCT AAG AGCCGATTTTGAAGAC CTTATACATCAGAAT TERM 1676 1380850 - 1380864 + r 93 -10 -4.10007 | opp_overlap 1380840, overlap 1380840 1380839 AAAAAGCCTTCAAAA TCGGCT AAG AGCCGA TTTTGAAGACCTTAT SPH_1495 1381926 - 1380892 - | hypothetical protein TERM 1677 1381911 - 1381901 - G 70 -5.4 -4.43208 | overlap 1381887 AGATTTGCAAACAAA TCAG CTA CTGA ATAATGTTCAAACAT SPH_1496 1383388 - 1381955 - | hypothetical protein SPH_1497 1384390 - 1383404 - | galactosyl transferase paralog SPH_1498 1385492 - 1384392 - | glycosyl transferase, group 1 family protein SPH_1499 1386330 - 1385485 - | licD3 protein TERM 1678 1386440 - 1386401 - R 100 -10.2 -5.07567 | opp_overlap 1386402 1386430 GCAGACTGTAAAAAA TCAAAGCCTGACTGCTAT CCAA ATAGCTATCAAACTTTGA TTTTTCTGTCTTATA TERM 1679 1386430 - 1386440 + r 73 -4 -5.12474 | opp_overlap 1386401, overlap 1386402 CTATCCAAATAGCTA TCAA ACT TTGA TTTTTCTGTCTTATA SPH_1500 1387883 - 1386609 - | LytR family transcriptional regulator TERM 1680 1387616 - 1387630 + g 100 -10 -5.42198 | opp_overlap 1387618 TAAAAATTCGTTTAA GACGGA GCT TCCGTC TTTTCTTTTTTGGAG SPH_1501 1388728 - 1387880 - | prephenate dehydratase (PDT) aroK 1389201 - 1388725 - | shikimate kinase aroA 1390477 - 1389194 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1681 1390550 - 1390524 - R 88 -7.4 -4.91511 | opp_overlap 1390524 1390544, overlap 1390544 ATTTTATCATAAAAA GTCAGAAATTCC TTA AAAATTCCTGAC TTTAGGATCGTTCTT SPH_1504 1390907 - 1390569 - | hypothetical protein SPH_1505 1392021 - 1390918 - | prephenate dehydrogenase TERM 1682 1390961 - 1390987 + g 72 -4.4 -4.67011 | opp_overlap 1390961 TTTTCTGTTATGAGA TGCTCAGCTCTT TCC AAGTCTTGAGCA TTTTTAAATGAAATT aroC 1393197 - 1392031 - | chorismate synthase aroB 1394274 - 1393207 - | 3-dehydroquinate synthase aroE 1395147 - 1394293 - | shikimate 5-dehydrogenase aroD 1395814 - 1395137 - | 3-dehydroquinate dehydratase, type I SPH_1510 1396974 - 1395811 - | methyltransferase TERM 1683 1397111 - 1397133 + r 100 -10.6 -4.96501 | opp_overlap 1397111 AATCACAATAAAAAA TGCTCTTCCG TCT TGGAGGAGCA TTTCTTTTTATCAAC TERM 1684 1397133 - 1397111 - R 93 -7.7 -5.59534 | opp_overlap 1397111 AATCACAATAAAAAA TGCTCTTCC GTCTT GGAGGAGCA TTTCTTTTTATCAAC SPH_1511 1399293 - 1397659 - | hypothetical protein TERM 1685 1398480 - 1398490 + g 75 -5.4 -4.7373 | opp_overlap 1398480 CGTCATAAAAACGAG GAAG GAC CTTC TTTTTGGTCAGATAA TERM 1686 1398903 - 1398881 - G 76 -7 -4.35644 | overlap 1398878 1398897 AGGACCAGAAAATAA GCTAGGATTG GTA CAATTCCAGC TAGAGCTGGCAAGAG SPH_1512 1400023 - 1399274 - | ABC transporter, ATP-binding protein SPH_1513 1400202 - 1401656 + | alpha-amylase (1,4-alpha-D-glucanglucanohydrolase) TERM 1687 1401674 - 1401695 + T 83 -5.1 -5.47159 | opp_overlap 1401674 GCTCATAATAACCAA GCTAGGTCC AAGC GGATTTGGC TTTTTTGTATTCACA TERM 1688 1401736 - 1401715 - T 88 -7.3 -4.87665 | opp_overlap 1401715 1401718 TTGTATTCACAAAAA GACCTACCC AAAT GGATAGATC TTTACTTGATTACAA alaS 1404364 - 1401746 - | alanyl-tRNA synthetase TERM 1689 1402076 - 1402096 + g 89 -6.8 -5.28942 | gap 1, overlap 1402078 ATCTTTGAAGATATC GCCTGCGGC TGCA GCTGC-GGC TTTTTCTTTCAACTC SPH_1515 1404871 - 1404386 - | hypothetical protein TERM 1690 1405611 - 1405591 - R 84 -8.3 -4.58395 | opp_overlap 1405591 1405589 TCTATTCCTTAAAAA CGAACCAGC TTG ACTGATTCG TCTTCTTACGTTTAT SPH_1516 1406700 - 1405630 - | ABC transporter substrate-binding protein - spermidine/putrescine transport SPH_1517 1407470 - 1406697 - | spermidine/putrescine ABC transporter, permease protein SPH_1518 1408273 - 1407467 - | ABC transporter membrane-spanning permease - spermidine/putrescine transport SPH_1519 1409411 - 1408254 - | spermidine/putrescine import ATP-binding protein PotA TERM 1691 1408443 - 1408461 + g 70 -8.2 -3.61764 | overlap 1408440 GATGGCCTTACGGGT TGAGTGGA TCA TCCATTCA TTTCCAAGTTCGTCA murB 1410477 - 1409572 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1692 1410584 - 1410574 - R 76 -4.6 -5.18726 | opp_overlap 1410568 1410574, overlap 1410568 TTTGCATAAGAAAAA GAGG TTC CCCC CTTTTTATGATTTTT SPH_1521 1410981 - 1410589 - | hypothetical protein SPH_1522 1411348 - 1410959 - | hypothetical protein TERM 1693 1411023 - 1410992 - G 70 -9.4 -2.55253 | gap 1 ATCAACTCCAAGCCA CCATGCCCTA-GGCC ATA GGCCATAGGCCAAGG CATCTGCCTTTTCCA budA 1412089 - 1411358 - | alpha-acetolactate decarboxylase SPH_1524 1412231 - 1413502 + | GntR family transcriptional regulator TERM 1694 1413488 - 1413515 + T 95 -8.5 -5.3798 | opp_overlap 1413469 1413488 TTAAACTATTTAAAA GCAGAATTGGA ATGACA TCCAACTCTGC TTTTTCTTATTCTTC TERM 1695 1413515 - 1413488 - T 100 -10.7 -4.26079 | opp_overlap 1413488, overlap 1413469 TTAAACTATTTAAAA GCAGAATTGGA ATGACA TCCAACTCTGC TTTTTCTTATTCTTC SPH_1525 1414337 - 1413522 - | amino acid ABC transporter, amino acid-binding protein TERM 1696 1414388 - 1414400 + r 72 -2.7 -5.30575 | TAACGATATCCAAGT TACTT GTC AAGTG TTTTTTAAATTTTTA phoU1 1415147 - 1414494 - | phosphate transport system regulatory protein PhoU TERM 1697 1414946 - 1414958 + g 74 -4.9 -4.69559 | overlap 1414935 GTTGTTGGAGTGCGA TCATT TCA AATGA TTTCTTTTCCAGTTT TERM 1698 1415059 - 1415047 - G 70 -5.5 -4.37886 | opp_overlap 1415050, overlap 1415050 TCATGCGTGACAAAA GCACG TAC CGTAC GATTGATTTGTGAGA pstB1 1415917 - 1415159 - | phosphate ABC transporter, ATP-binding protein TERM 1699 1415397 - 1415412 + g 73 -7.6 -4.12902 | AAAGCCGAAGTTGGC TCATCC AAGA GGATGA TTTTAGGACTAGTTG pstB2 1416733 - 1415930 - | phosphate ABC transporter, ATP-binding protein pstA1 1417628 - 1416744 - | phosphate ABC transporter, permease protein PstA pstC1 1418535 - 1417618 - | phosphate ABC transporter, permease protein PstC TERM 1700 1418471 - 1418447 - G 73 -7.9 -3.86206 | opp_overlap 1418446 1418449, overlap 1418449 ACTATCAAAGAAAGA CAGGCAAAGGT CAA ACCTTTTCCTA ATTTCTCCAGACGAG TERM 1701 1418469 - 1418449 - G 72 -8.3 -3.50491 | opp_overlap 1418446 1418449, overlap 1418447 TATCAAAGAAAGACA GGCAAAGGT CAA ACCTTTTCC TAATTTCTCCAGACG SPH_1531 1419413 - 1418535 - | phosphate-binding protein PstS 1 (PBP 1) SPH_1532 1419643 - 1419756 + | hypothetical protein SPH_1533 1421291 - 1419987 - | NOL1/NOP2/sun family protein TERM 1702 1421240 - 1421218 - G 93 -12.8 -4.07568 | opp_overlap 1421217 1421220 GCTTCCTCCTCAAAA GAGGCAAGAA AAT CTCTTGCCTC ATCTCCTAGTATCTC SPH_1534 1422065 - 1421292 - | inositol monophosphatase family protein SPH_1535 1422333 - 1422055 - | hypothetical protein TERM 1703 1422296 - 1422266 - G 100 -7 -5.56568 | gap 1, overlap 1422270 ACATCATTAAAAAAA GAAAGCACTGAAG CAAGTT CTTCAGTGC-TCC ACGACAAATCTAGTG TERM 1704 1422293 - 1422270 - G 100 -11.1 -5.23943 | overlap 1422266 CATTAAAAAAAGAAA GCACTGAAG CAAGTT CTTCAGTGC TCCACGACAAATCTA SPH_1536 1422734 - 1422333 - | regulatory protein Spx TERM 1705 1422814 - 1422842 + r 73 -8.3 -3.54459 | opp_overlap 1422816, overlap 1422799 1422796 1422816 GGATTTTTAGAAAAA AAGCCTATTTTTT CAG GAAAAATAGGCTG TTTGCGAACGATTGA TERM 1706 1422840 - 1422816 - R 100 -10.2 -5.61596 | opp_overlap 1422799 1422796 1422816 1422814 ATTTTTAGAAAAAAA GCCTATTTTT TCAGG AAAAATAGGC TGTTTGCGAACGATT TERM 1707 1422816 - 1422840 + r 87 -10.9 -3.34894 | opp_overlap 1422816, overlap 1422799 1422796 1422814 ATTTTTAGAAAAAAA GCCTATTTTTT CAG GAAAAATAGGC TGTTTGCGAACGATT SPH_1537 1423563 - 1422946 - | integral membrane protein SPH_1538 1424326 - 1423553 - | HAD family hydrolase SPH_1539 1425074 - 1424337 - | acyl-acyl-carrier protein thioesterase SPH_1540 1426209 - 1425079 - | putative oxygen-independent coproporphyrinogen III oxidase TERM 1708 1426288 - 1426250 - R 100 -9.6 -4.9792 | opp_overlap 1426250 1426248 GATTCCAGATAAAAA TCACCATCCCCAGATACA TAG TCCGTCCGGAGATGGTGA TGGTTTATTCTTCTG SPH_1541 1426682 - 1426293 - | hypothetical protein SPH_1542 1427081 - 1426698 - | hypothetical protein lgt 1427870 - 1427082 - | prolipoprotein diacylglyceryl transferase hprK 1428798 - 1427863 - | HPr(Ser) kinase/phosphatase TERM 1709 1428916 - 1428898 - R 79 -3.9 -5.48213 | gap 1, opp_overlap 1428899, overlap 1428899 TATTTAAAAGAAAAA GGACTAGA TTTC TCTAG-CC TTTCATTTCAATTAG rpsU 1429104 - 1428928 - | ribosomal protein S21 SPH_1546 1429951 - 1429244 - | glucosamine-6-phosphate deaminase TERM 1710 1430933 - 1430913 - g 72 -8.3 -3.57263 | opp_overlap 1430921 1430926, overlap 1430921 AGTTTGATGGGCAAA TCCAAGCAG ATT CTGGTTGGA CCAATATCTTTATCA queA 1430102 - 1431130 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 1711 1431543 - 1431555 + T 71 -7.7 -3.58905 | GGATTATATATGTGA CTGAC TTC GTCAG TTCTATCTACAACCT SPH_1548 1432180 - 1431791 - | choline binding protein TERM 1712 1432350 - 1432362 + r 71 -3.3 -5.02476 | CTTGGACAAGAACTT GGGGC TTG GTTCC TTTTTTAACAACTCT SPH_1549 1434183 - 1433632 - | acetyltransferase TERM 1713 1434477 - 1434465 - R 89 -9.1 -4.13282 | opp_overlap 1434465, overlap 1434454 1434451 ATGAGAGGCTGAAAA CCTCC AGT GGAGG TTTTTCTTGCTTTTT TERM 1714 1434465 - 1434477 + r 100 -9.1 -5.30199 | opp_overlap 1434454 1434451 1434465 ATGAGAGGCTGAAAA CCTCC AGT GGAGG TTTTTCTTGCTTTTT TERM 1715 1434527 - 1434517 - R 80 -6.8 -4.8143 | opp_overlap 1434517 1434516 1434509 GCAAGAAGCTAAAAA GTCC CCC GGAC CTTCTTCGCTTTCTC TERM 1716 1434577 - 1434565 - R 93 -9.1 -4.62069 | opp_overlap 1434565 GGCTCAGGGTAAAAA CCTCC AAT GGAGG TTTTTACTCCCAAAA TERM 1717 1434565 - 1434577 + r 100 -9.1 -4.72272 | opp_overlap 1434565 GGCTCAGGGTAAAAA CCTCC AAT GGAGG TTTTTACTCCCAAAA nadE 1435405 - 1434581 - | NAD+ synthetase pncB 1436862 - 1435402 - | putative nicotinate phosphoribosyltransferase SPH_1552 1437466 - 1436978 - | hypothetical protein SPH_1553 1437665 - 1437456 - | hypothetical protein SPH_1554 1438779 - 1438051 - | hypothetical protein SPH_1555 1439514 - 1438795 - | ABC transporter ATP-binding protein - multidrug efflux TERM 1718 1439818 - 1439780 - R 79 -9.8 -3.21938 | opp_overlap 1439780, overlap 1439787 GTAAAATTTTATTAA CAAAAAACTCTCTACAAC AAA ATAATAGAGAGTTTTCTG CTTATTAATTTTTTT TERM 1719 1439811 - 1439787 - R 82 -4.3 -5.5112 | opp_overlap 1439780, overlap 1439780 TTTATTAACAAAAAA CTCTCTACAAC AAA ATAATAGAGAG TTTTCTGCTTATTAA SPH_1556 1440746 - 1440021 - | U32 family peptidase TERM 1720 1440897 - 1440878 - H 76 -4.4 -5.14563 | opp_overlap 1440892 GGGGCTAGGAAAAAA GTCTTTAA AATC TTAAAAAC GCATAGTATCAGGTA TERM 1721 1440892 - 1440940 + H 79 -10 -3.30635 | gap 1, opp_overlap 1440878 1440897, overlap 1440897 AGTCTTTAAAATCTT AAAAACGCATAGTATCAGGTATT GAAC AAT-CTTGATATTATGCGTTTTA TTGTGGGAAGATTTA TERM 1722 1440897 - 1440935 + H 100 -9.9 -4.77165 | gap 1, opp_overlap 1440897, overlap 1440892 TTAAAATCTTAAAAA CGCATAGTATCAGGTATT GAAC AAT-CTTGATATTATGCG TTTTATTGTGGGAAG TERM 1723 1440935 - 1440897 - H 74 -5.5 -4.7416 | gap 1, opp_overlap 1440892 1440897 TTAAAATCTTAAAAA CGCATAGTATCAGGTATT GAAC AAT-CTTGATATTATGCG TTTTATTGTGGGAAG SPH_1557 1440931 - 1441080 + | hypothetical protein SPH_1558 1442621 - 1441335 - | peptidase, U32 family protein TERM 1724 1441560 - 1441591 + g 72 -8.8 -3.50335 | overlap 1441565 AAACTCAACTTGGTC CCCTTCGTTAATGA CGTT TCGTTGACGAATGG TTGCTGTTTGTACCG TERM 1725 1442830 - 1442811 - H 88 -7.2 -5.1417 | overlap 1442812 CTAGAAAAGTAAAAA CCAGTATC CAAA GATACTGA CTCGTAAAAATACAT TERM 1726 1442829 - 1442812 - H 77 -8.5 -3.66876 | overlap 1442811 TAGAAAAGTAAAAAC CAGTATC CAAA GATACTG ACTCGTAAAAATACA TERM 1727 1444423 - 1444406 - g 73 -5.5 -4.55849 | overlap 1444408 CAAAAGCTAAAGAAA GAGTAGG TTAT CCTACAC AAAAACCTATTCTGT SPH_1561 1443796 - 1444986 + | DNA modification methyltransferase M.XbaI TERM 1728 1445043 - 1445018 - T 93 -7.7 -5.74288 | opp_overlap 1445018 AGAAAGAACAAAAAA TGCTCTGAAAC ACTG ATTTCAAAGCA TTTTTTGTTAGTTTA TERM 1729 1445018 - 1445043 + T 86 -4.8 -5.59655 | opp_overlap 1445018 AGAAAGAACAAAAAA TGCTCTGAAA CACTGA TTTCAAAGCA TTTTTTGTTAGTTTA SPH_1562 1446624 - 1445062 - | GMP synthase [glutamine-hydrolyzing] (glutamineamidotransferase) (GMP synthetase) TERM 1730 1447085 - 1447073 - g 81 -2.7 -5.60993 | overlap 1447074 TTTCCTACAAAAAAA CCATT CCC AATGA GCAAGAAGTTGCCAA TERM 1731 1447245 - 1447222 - g 81 -5.4 -5.07053 | AAGGACTTTAAAAAA GAAGAAATCA CCAG TCATTTCTTC CAAACCTTGCAAAAA SPH_1563 1446766 - 1447464 + | transcriptional regulator, GntR family protein TERM 1732 1447478 - 1447502 + T 93 -5.7 -5.98675 | opp_overlap 1447480, overlap 1447480 AGATTACCACGCAAA AACTCTCTGTC ACG GACAAAGAGTC TTTTTTATTTTTCTA TERM 1733 1447480 - 1447500 + T 84 -8.3 -4.585 | opp_overlap 1447480, overlap 1447478 ATTACCACGCAAAAA CTCTCTGTC ACG GACAAAGAG TCTTTTTTATTTTTC TERM 1734 1447500 - 1447480 - T 100 -10.5 -4.68994 | opp_overlap 1447480 1447478 ATTACCACGCAAAAA CTCTCTGTC ACG GACAAAGAG TCTTTTTTATTTTTC SPH_1564 1448403 - 1447507 - | membrane protein SPH_1565 1449347 - 1448412 - | beta-lactamase SPH_1566 1450069 - 1449344 - | CppA protein SPH_1567 1450788 - 1450153 - | hypothetical protein SPH_1568 1451617 - 1450790 - | HAD family hydrolase SPH_1571 1452768 - 1452881 + | hypothetical protein def1 1453205 - 1453816 + | peptide deformylase TERM 1735 1453823 - 1453840 + F 74 -5.5 -4.75289 | opp_overlap 1453818 1453823 1453824, overlap 1453824 CTTGAATAAAGAAAA TCCCGTT GCAA GACGGGG TTTTGTGTTATAATA TERM 1736 1453962 - 1453933 - g 71 -5.1 -4.56113 | gap 1, overlap 1453934 1453935 AATACAGGAAACAAA CTCTACCTCCAAGA AGA TCTCCGAGGTA-AG AATGTTGAGAAAGTC TERM 1737 1454021 - 1454001 - g 70 -5.4 -4.38744 | overlap 1454003 AGCTACAGAAAAGAA GGTGTCCA TTTCT TGGACATC AAAAAAATCTCTCTC TERM 1738 1454041 - 1454029 - g 83 -3.4 -5.58454 | overlap 1454031 TGGACATCAAAAAAA TCTC TCTCT GAGA TGACTGAAGGTGCTG SPH_1573 1453861 - 1454589 + | RNA methyltransferase TERM 1739 1454617 - 1454594 - T 90 -8.2 -5.35459 | opp_overlap 1454594 ATAGACTATAAAAAA GTTTCCAGTC ATCT GATTGGAAAC TTTTTTATGATTAAC TERM 1740 1454594 - 1454617 + T 100 -10.4 -5.37345 | opp_overlap 1454594 ATAGACTATAAAAAA GTTTCCAGTC ATCT GATTGGAAAC TTTTTTATGATTAAC trxB 1455539 - 1454628 - | thioredoxin-disulfide reductase SPH_1575 1455829 - 1455605 - | hypothetical protein TERM 1741 1455854 - 1455897 + r 83 -10.6 -3.22886 | gap 1, opp_overlap 1455860 1455865, overlap 1455860 1455865 CATTTCTATCTTTTT TAAAGAGTAAACTCAGCTAGT CCA ACTAACTGAGTTTTC-CTTTA TCTATTATATCAAAT TERM 1742 1455892 - 1455860 - R 93 -12.9 -3.34715 | opp_overlap 1455854 1455860 1455865, overlap 1455865 TATCTTTTTTAAAGA GTAAACTCAGCTAGT CCA ACTAACTGAGTTTTC CTTTATCTATTATAT TERM 1743 1455860 - 1455892 + r 83 -10.7 -3.14751 | opp_overlap 1455860 1455865, overlap 1455854 1455865 TATCTTTTTTAAAGA GTAAACTCAGCTAGT CCA ACTAACTGAGTTTTC CTTTATCTATTATAT TERM 1744 1455887 - 1455865 - R 93 -11.4 -4.00532 | opp_overlap 1455860 1455854 1455865, overlap 1455860 TTTTTAAAGAGTAAA CTCAGCTAGT CCA ACTAACTGAG TTTTCCTTTATCTAT TERM 1745 1455865 - 1455887 + r 100 -9.2 -4.66057 | opp_overlap 1455865 1455860, overlap 1455860 1455854 TTTTTAAAGAGTAAA CTCAGCTAGT CCA ACTAACTGAG TTTTCCTTTATCTAT SPH_1576 1456650 - 1455907 - | L-cystine import ATP-binding protein TcyN SPH_1577 1457450 - 1456650 - | ABC transporter membrane-spanning permease - aspartate/glutamate transport TERM 1746 1457075 - 1457065 - G 76 -6.8 -4.37711 | TCATTAAAGGCAAAA GCGA CAA TCGC AAAAGCTGCAGCTGG TERM 1747 1457606 - 1457580 - R 76 -9.7 -2.95388 | opp_overlap 1457579 1457576 CAGGGAAGTTATATA TTTTATCTATC AAAGA GATAGATAAAA ACTATTTCAGTCCCA SPH_1578 1457964 - 1457608 - | arsenate reductase SPH_1579 1458489 - 1457977 - | O6-methylguanine-DNA methyltransferase SPH_1580 1458983 - 1458489 - | acetyltransferase SPH_1581 1459118 - 1459564 + | hypothetical protein SPH_1582 1459561 - 1460208 + | hemolysin-3 (hemolysin III) (Hly-III) TERM 1748 1460213 - 1460233 + T 86 -5.5 -5.63517 | opp_overlap 1460213 ATTACATGTAAAAAA GTTGAGA AATTCAA TCTCAAC TTTTTTCTTTACACA TERM 1749 1460233 - 1460213 - T 79 -5.5 -5.13473 | opp_overlap 1460213 ATTACATGTAAAAAA GTTGAGA AATTCAA TCTCAAC TTTTTTCTTTACACA SPH_1583 1460810 - 1460229 - | SNO family glutamine amidotransferase SPH_1584 1461686 - 1460811 - | pyridoxine biosynthesis protein TERM 1750 1461584 - 1461568 - G 73 -10.1 -2.80994 | opp_overlap 1461568 TCCAAGGCCATCACA GCTGCCG CAC CAGCAGC TTCTGCGATACGAGC TERM 1751 1461636 - 1461654 + g 82 -3.9 -5.38326 | gap 1 CATAATAACACCACC CTTGAGCA TCTG TGC-CAAG TTTTTATTTAGTTCA TERM 1752 1461797 - 1461827 + r 77 -9.8 -2.99987 | opp_overlap 1461798, overlap 1461794 ACAGATTGGCTAAAA ACTATCTGACCTTA ACT TAAGGCCAGATAGC TCATTCATTTTTATC TERM 1753 1461826 - 1461798 - R 100 -15.5 -4.59109 | opp_overlap 1461797 1461794 CAGATTGGCTAAAAA CTATCTGACCTTA ACT TAAGGCCAGATAG CTCATTCATTTTTAT SPH_1585 1463217 - 1461838 - | NADH oxidase (noxase) TERM 1754 1463621 - 1463601 - g 71 -4.8 -4.56775 | overlap 1463603 ATCTTTCTCCAAAAA TCCTTTGA CTTGC TCAAAGAA CTTGAATACCGCTTC SPH_1586 1463511 - 1464434 + | thiamine biosynthesis lipoprotein SPH_1587 1464494 - 1465099 + | NADPH-dependent FMN reductase domain-containing protein SPH_1588 1465118 - 1466362 + | NADPH-dependent FMN reductase domain-containing protein TERM 1755 1466375 - 1466391 + T 100 -10.9 -5.00616 | TAATGATAGTTTTTA GGAACCA TTA TGGTTCC TTTTTTAGCGAAAAA TERM 1756 1466432 - 1466408 - T 84 -6.5 -5.08824 | opp_overlap 1466408 1466406 TTTTTAGCGAAAAAA GACTAGCAA ACACAAA CTGCTAGTC TCTTTGTTATCGTTT SPH_1589 1466735 - 1466478 - | hypothetical protein glyS 1468813 - 1466777 - | glycyl-tRNA synthetase, beta subunit TERM 1757 1468698 - 1468725 + g 83 -6.2 -5.07053 | opp_overlap 1468699, overlap 1468699 ATGGCTTCAAAAGAC AGGCGGTTTTCC TTGA GGAAGGCTGCCA TTTTTTCGCCTAGTT TERM 1758 1468699 - 1468724 + g 79 -9.7 -3.63148 | opp_overlap 1468699, overlap 1468698 TGGCTTCAAAAGACA GGCGGTTTTCC TTGA GGAAGGCTGCC ATTTTTTCGCCTAGT TERM 1759 1468923 - 1468904 - R 71 -6.4 -4.11216 | opp_overlap 1468904 1468897 GTTTCATTGCTAAAA TTGGAGCC AAAA GTCTCCAA TTTTGCCTAGTATCC TERM 1760 1468904 - 1468923 + r 71 -6.4 -4.22652 | opp_overlap 1468904, overlap 1468897 GTTTCATTGCTAAAA TTGGAGCC AAAA GTCTCCAA TTTTGCCTAGTATCC TERM 1761 1468932 - 1468958 + r 86 -11 -3.18264 | overlap 1468933 TCTCCAATTTTGCCT AGTATCCTTAGT TTC ACTAAGGATACC TTCATCACTGCGGCA TERM 1762 1468933 - 1468957 + r 95 -14.5 -2.50816 | overlap 1468932 CTCCAATTTTGCCTA GTATCCTTAGT TTC ACTAAGGATAC CTTCATCACTGCGGC glyQ 1469942 - 1469025 - | glycyl-tRNA synthetase, alpha subunit SPH_1592 1470897 - 1470136 - | hypothetical protein TERM 1763 1470813 - 1470803 - G 74 -4 -5.02074 | opp_overlap 1470792 1470788 1470803 TCATTCTTTAAAAAA GATT GAT AATC TTTCAACTTTTCAGT TERM 1764 1470994 - 1470938 - R 82 -7.5 -4.56736 | gap 2, opp_overlap 1470951, overlap 1470946 ACTGAATAAGCAAAA GAACCACA-T-CTGACAATCCTAGGTT GATTT AACCTAGGGGCGTCAGAAACGCGGTTC CACCCTAATTTATTA TERM 1765 1470984 - 1470946 - R 83 -11.1 -3.11158 | opp_overlap 1470951, overlap 1470938 AGCAAAAGAACCACA TCTGACAATCCTAGGTT GATTT AACCTAGGGGCGTCAGA AACGCGGTTCCACCC SPH_1593 1472012 - 1471170 - | 2,5-diketo-d-gluconic acid reductase a TERM 1766 1471203 - 1471219 + g 81 -6.6 -4.72486 | opp_overlap 1471191 AACTCGTGGAGCACC CGATTG AACAG CAATCG TTTTTAAGGTTTCTC TERM 1767 1472114 - 1472087 - R 83 -6.4 -5.00884 | opp_overlap 1472090 ATCTTCTGTAAAAAA TAAGTCTGTCAA ATAT CTAACAGACCTA TTTTTTCTTGCTTAT SPH_1594 1473463 - 1472126 - | peptidoglycan GlcNAc deacetylase SPH_1595 1474105 - 1473752 - | hypothetical protein TERM 1768 1474266 - 1474247 - H 70 -4.4 -4.65933 | gap 1, opp_overlap 1474262, overlap 1474243 TATTCGGAAAAGAAA GCTTTTCTT CAG AAGAAA-GC TAATAGCTTATTTGA SPH_1596 1474362 - 1475339 + | oxidoreductase TERM 1769 1475708 - 1475679 - g 76 -10.8 -2.60776 | opp_overlap 1475679 1475678, overlap 1475678 1475677 AACGTCTTAAAAAGG GGCCAGAAATTC TGATTG GAACTCCTGGCC GTATCTTTGAACTCA TERM 1770 1475771 - 1475739 - g 80 -2 -5.58209 | opp_overlap 1475762 1475763, overlap 1475740 1475743 1475761 1475763 TTAAACTTAAAAAAA TCAAGATGATGAAT GTGGA AACCATCATCCTGG ATGAATTTGACCAAT SPH_1597 1475336 - 1476418 + | DEAD RNA helicase TERM 1771 1476428 - 1476454 + T 100 -11.7 -5.24531 | opp_overlap 1476440 AAATAAAGCCCCATT GCTCTATACAC ATCCA GTGTATGGAGC TTTTTTATAAGCAAT SPH_1598 1477135 - 1476482 - | transposase TERM 1772 1477626 - 1477638 + r 71 -7.7 -3.58905 | GTCGTATAGATGTTA CTGAC TTC GTCAG TTCTATCTACAACCT TERM 1773 1477864 - 1477844 - R 100 -10.5 -5.52909 | opp_overlap 1477844 CAATATCTAAAAAAA GAACCTTGC CAA GCAAGATTC TTTTAGTGTCTGACT TERM 1774 1477844 - 1477864 + r 83 -8.3 -4.39568 | opp_overlap 1477844 CAATATCTAAAAAAA GAACCTTGC CAA GCAAGATTC TTTTAGTGTCTGACT tuf 1479108 - 1477912 - | translation elongation factor Tu SPH_1602 1479573 - 1479451 - | hypothetical protein TERM 1775 1479974 - 1479952 - R 100 -9.2 -5.25735 | opp_overlap 1479952 CTAAAAAATCAAAAA GAGAGAACCA GTC TGATCCTCTC TTACTTATAGATGGT SPH_1603 1480888 - 1480019 - | glycerol facilitator-aquaporin gla (aquaglyceroporin)(glyceroaquaporin) TERM 1776 1480454 - 1480477 + g 74 -6 -4.40804 | opp_overlap 1480444, overlap 1480458 ATTAATCAAACCATT GACAGTTGCT GCAT AGCGACTTTC TTTTGTACCATGGTC TERM 1777 1480458 - 1480473 + g 75 -5.4 -4.77775 | overlap 1480454 ATCAAACCATTGACA GTTGCT GCAT AGCGAC TTTCTTTTGTACCAT TERM 1778 1481091 - 1481056 - R 82 -8.5 -4.07687 | gap 2, opp_overlap 1481056 1481067 1481088, overlap 1481042 1481067 ACCTCGTTCTCAAAA CCAGGAAAAAAGCCCAC ATCT GTGAGCTT-TT-CCTGG TTCCTAGATTCTAAA TERM 1779 1481082 - 1481067 - R 85 -6.8 -5.25656 | opp_overlap 1481067 1481056, overlap 1481056 AAAACCAGGAAAAAA GCCCAC ATCT GTGAGC TTTTCCTGGTTCCTA SPH_1604 1481789 - 1481112 - | MucBP domain-contain protein SPH_1605 1482826 - 1481747 - | hypothetical protein TERM 1780 1482164 - 1482187 + gr 86 -4.6 -5.4251 | overlap 1482165 AGTATAATATTTTCC GTCAGTAGTA GTCA TGCTACTGAG TTTTTTATCTGTGAC TERM 1781 1482165 - 1482186 + gr 75 -8.1 -3.84422 | overlap 1482164 GTATAATATTTTCCG TCAGTAGTA GTCA TGCTACTGA GTTTTTTATCTGTGA SPH_1606 1483215 - 1482937 - | hypothetical protein TERM 1782 1484573 - 1484563 - H 93 -4 -6.07969 | opp_overlap 1484566, overlap 1484566 1484568 TAAAACTAAAAAAAA TGAT ATA ATCA AACTGATTAAATGTT SPH_1610 1484611 - 1486329 + | phosphoglucomutase/phosphomannomutase alpha/beta/subunit SPH_1611 1486440 - 1486787 + | bacterocin transport accessory protein TERM 1783 1486816 - 1486862 + T 75 -8.4 -3.71848 | gap 1, opp_overlap 1486821, overlap 1486821 AAGTCTTAAAATCAC AAAAACGCATAATGT-AAGGT GCAAAA ACCTTGATATTATGCGTTTTA TTGTTCCTAAAACAG TERM 1784 1486857 - 1486821 - T 83 -6.1 -5.09245 | gap 1, opp_overlap 1486816 1486821 TTAAAATCACAAAAA CGCATAATGT-AAGGT GCAAAA ACCTTGATATTATGCG TTTTATTGTTCCTAA TERM 1785 1486821 - 1486857 + T 90 -8.3 -4.92757 | gap 1, opp_overlap 1486821, overlap 1486816 TTAAAATCACAAAAA CGCATAATGT-AAGGT GCAAAA ACCTTGATATTATGCG TTTTATTGTTCCTAA TERM 1786 1487045 - 1487021 - T 100 -9.4 -5.69473 | opp_overlap 1487021, overlap 1487042 TAGATTACAAAAAAA CTACGTTTTG CTAAT CAAAACGCAG TTTCAGCCACTATTT SPH_1612 1487901 - 1487065 - | ABC transporter substrate-binding protein - glutamine transport SPH_1613 1488543 - 1487914 - | glutamine transport ATP-binding protein GlnQ SPH_1614 1489194 - 1488553 - | amino acid ABC transporter, permease protein TERM 1787 1488974 - 1488960 - G 72 -8.6 -3.51232 | GGCGGTCTAAACGAA TCCCAA TAC TTGGGA GCACATAATAGATAA SPH_1615 1490569 - 1489340 - | TPR domain-containing protein TERM 1788 1489461 - 1489475 + g 72 -8.6 -3.52093 | AGATAGATATAGTGT TCCAGA AAT TCTGGA TTGTCCTTCAAATCT SPH_1616 1491725 - 1490559 - | transport protein TERM 1789 1491551 - 1491535 - G 77 -6.5 -4.53119 | AAATAATATAACAAA CCAGACA AAA TGACTGG CAACATCACAACTGC SPH_1617 1491869 - 1492882 + | 3-carboxymuconate cyclase TERM 1790 1492897 - 1492919 + T 93 -7.1 -5.58179 | opp_overlap 1492897 AAACACCATAAAAAA TGAACTTGG TATTT TCAAGTTCA TTTTTTCTTATAGTC TERM 1791 1492919 - 1492897 - T 85 -6.4 -5.38321 | opp_overlap 1492897 AAACACCATAAAAAA TGAACTTG GTATTTT CAAGTTCA TTTTTTCTTATAGTC atpC 1493346 - 1492927 - | ATP synthase F1, epsilon subunit atpD 1494763 - 1493357 - | ATP synthase F1, beta subunit TERM 1792 1494427 - 1494439 + g 74 -9.1 -3.48276 | overlap 1494424 TTTTATGAATTGGCT GACGC TCT GCGTC TTCTGTAAAAGGAGC TERM 1793 1494728 - 1494718 - G 70 -3.2 -4.86731 | CTGCTGCAAACAAAA CGTC TAC AACG GGACCGATAACCTGA atpG 1495727 - 1494849 - | ATP synthase F1, gamma subunit TERM 1794 1495595 - 1495571 - G 79 -8.6 -4.10657 | GGATATCTGTCAAAA GTTTACGCAC TTTCT GAGCGTAAAC TTGGAAGTTGCGAGC atpA 1497248 - 1495743 - | ATP synthase F1, alpha subunit TERM 1795 1496673 - 1496687 + g 74 -4.3 -4.86621 | opp_overlap 1496673 1496680, overlap 1496680 CGCGACGTAGATACA GATCA TATCT TGATC TTTTTGGTTCAAGAT TERM 1796 1496857 - 1496843 - G 77 -10 -3.30243 | ACTTACGTTGCATAA CACCAG GAG CTGGTG CCTCAACTGGACGAG atpH 1497799 - 1497263 - | ATP synthase F1, delta subunit atpF 1498293 - 1497799 - | ATP synthase F0, B subunit atpB 1499023 - 1498307 - | ATP synthase F0, A subunit SPH_1625 1499258 - 1499058 - | hypothetical protein SPH_1626 1500340 - 1499333 - | transposase TERM 1797 1500541 - 1500522 - R 83 -7.9 -4.76274 | opp_overlap 1500522 GAAAGCAACACAAAA TCCGAGA GGGAAA TCTCGGA TTAATGTCAATTTAA SPH_1627 1501159 - 1500761 - | acetyltransferase, gnat family protein SPH_1628 1501729 - 1501277 - | hypothetical protein TERM 1798 1501328 - 1501346 + g 72 -10.4 -2.61383 | overlap 1501327 ACTAGCCGCAGGTTG CTCAAAAC ACT GTTTTGAG GTTGTAGATAGAACT TERM 1799 1501375 - 1501357 - G 71 -9.6 -2.87931 | opp_overlap 1501372 1501373, overlap 1501360 1501372 TTGAGGTTGTAGATA GAACTGAC GAA GTCAGCTC AAAGCATGGTTTTGA TERM 1800 1501417 - 1501405 - G 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAGCATGGTTT TERM 1801 1501462 - 1501450 - G 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAGCATGGTTT TERM 1802 1501507 - 1501495 - G 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTCAAAGCATGGTTT TERM 1803 1501553 - 1501571 + g 72 -10.4 -2.61383 | overlap 1501552 AACTGACGAAGTCGG CTCAAAAC ATG GTTTTGAG GTTGTAGATGAAACT TERM 1804 1501598 - 1501616 + g 72 -10.4 -2.61383 | overlap 1501597 AACTGACGAAGTCGG CTCAAAAC ATG GTTTTGAG GTTGTAGATGAAACT TERM 1805 1501642 - 1501630 - G 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG TAACCATACATACGG TERM 1806 1501745 - 1501714 - G 93 -10.2 -4.88222 | gap 1, opp_overlap 1501714 AGCAAAATGGAAAAA GGAGTGAGTGAAGCA CAT CGCCTC-CCCACTCC TTTTTCTGTTTTTAG TERM 1807 1501714 - 1501745 + g 87 -5.1 -5.36364 | gap 1, opp_overlap 1501714 AGCAAAATGGAAAAA GGAGTGAGTGAAGC ACATC GCCTC-CCCACTCC TTTTTCTGTTTTTAG SPH_1629 1502239 - 1501757 - | transcription elongation factor GreA TERM 1808 1501855 - 1501866 + g 73 -7.2 -4.06055 | TGCCAATCAAGTCCT GCCC AATT GGGC TTTCATTTGAAACCT TERM 1809 1502016 - 1502028 + g 79 -3.3 -5.38054 | TCGCTATTGACGATT TCAGC ATA GCGGA TTTTTGTTTCTAAGC TERM 1810 1502216 - 1502226 + g 78 -4 -5.28826 | CTTTTCCTCAAGGGT CATA GGA TATG TTTTTTCTGCCATTT TERM 1811 1502274 - 1502303 + r 72 -8.1 -3.36578 | opp_overlap 1502265 1502274 1502279, overlap 1502265 1502279 ATAATATTTTCTAAA GAAAATTATGTGA AGTA TCACATAATTTTA GTTTGTTTAGTTTAA TERM 1812 1502303 - 1502274 - R 73 -8.1 -3.57883 | opp_overlap 1502265 1502274 1502279, overlap 1502265 1502279 ATAATATTTTCTAAA GAAAATTATGTGA AGTA TCACATAATTTTA GTTTGTTTAGTTTAA TERM 1813 1502298 - 1502279 - R 90 -8 -4.87133 | opp_overlap 1502274 1502279, overlap 1502274 ATTTTCTAAAGAAAA TTATGTGA AGTA TCACATAA TTTTAGTTTGTTTAG TERM 1814 1502279 - 1502298 + r 86 -8 -4.72863 | opp_overlap 1502279 1502274, overlap 1502274 ATTTTCTAAAGAAAA TTATGTGA AGTA TCACATAA TTTTAGTTTGTTTAG SPH_1630 1503965 - 1502310 - | aminodeoxychorismate lyase SPH_1631 1504540 - 1504046 - | acetyltransferase SPH_1632 1505001 - 1504537 - | acetyltransferase TERM 1815 1504887 - 1504857 - G 70 -8.5 -3.35996 | gap 1, opp_overlap 1504862, overlap 1504861 1504862 CATCCCTAGCTAGAA GAAAGGTATCCGCA CACT TACGGATA-CTTTC TTCTAAAATATGGGA TERM 1816 1504884 - 1504861 - G 74 -6 -4.33417 | opp_overlap 1504862, overlap 1504857 1504862 CCTAGCTAGAAGAAA GGTATCCGCA CACT TACGGATACT TTCTTCTAAAATATG TERM 1817 1504883 - 1504862 - G 73 -9.5 -3.19568 | opp_overlap 1504862, overlap 1504861 1504857 CTAGCTAGAAGAAAG GTATCCGCA CACT TACGGATAC TTTCTTCTAAAATAT TERM 1818 1504862 - 1504883 + g 78 -7.3 -4.32579 | opp_overlap 1504862 1504861 1504857 CTAGCTAGAAGAAAG GTATCCGCA CACT TACGGATAC TTTCTTCTAAAATAT murC 1506345 - 1505011 - | UDP-N-acetylmuramate--alanine ligase TERM 1819 1505135 - 1505165 + g 80 -6.2 -4.68384 | AGCGGAGAAACATTT TCAACAGTAATCAC TTG GTGTTTTTTGTTGA TTTTGTTGGCTAGGT SPH_1634 1506973 - 1506356 - | hypothetical protein SPH_1635 1510119 - 1507021 - | Snf2 family protein TERM 1820 1510204 - 1510174 - R 73 -7.7 -3.73042 | gap 1, opp_overlap 1510171 1510174, overlap 1510172 TCCCCTATGAAAATA GCCTTCTAAGGATA CTTT TCTCCT-AGAAGGC TGGATTTTTAAAGTT SPH_1636 1511378 - 1510212 - | putative aminotransferase B SPH_1637 1512480 - 1511386 - | cystathionine gamma-synthase (CGS) (O-succinylhomoserine(thiol)-lyase) TERM 1821 1512598 - 1512580 - R 71 -3.1 -5.06585 | opp_overlap 1512580 CAAACTATATAAAAA GGGAG TTTTTCCTG CTCCC TTTAATAGACTATAA TERM 1822 1513216 - 1513200 - R 89 -10.9 -3.55548 | GAATATCTCCTGAAA GCGGTTT ATA AAACCGC TCTAACAAACGCACA TERM 1823 1514436 - 1514398 - R 77 -6.1 -4.77165 | opp_overlap 1514398, overlap 1514393 CTTCCTATAACAAAA CGCATAACATCTAGGAT TTTAT ATACCTGATATTATGCG TTTTTAAGCACAAAG SPH_1641 1516442 - 1514484 - | oligopeptide binding lipoprotein SPH_1642 1518283 - 1516646 - | polysaccharide transporter TERM 1824 1519296 - 1519317 + G 72 -9.5 -3.02511 | gap 1 TTGCTGCTGGACTTG CTTGTCTCCG TCT CGGAG-CAAG TCTTGAGGACATCAA SPH_1643 1518374 - 1519819 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 1825 1519864 - 1519823 - T 75 -8.4 -3.83226 | gap 1, opp_overlap 1519823 1519832 1519856, overlap 1519832 AATTATTTATAAGAA TA-GAAAAAATCAAGGG AAAATGAAA CCCTTGATTTTTTCCTA TTATTTAGTAAAAAC TERM 1826 1519823 - 1519864 + T 79 -8.4 -4.00042 | gap 1, opp_overlap 1519823 1519832, overlap 1519832 1519856 AATTATTTATAAGAA TA-GAAAAAATCAAGGG AAAATGAAA CCCTTGATTTTTTCCTA TTATTTAGTAAAAAC TERM 1827 1519854 - 1519832 - T 83 -4.9 -5.55695 | opp_overlap 1519832 1519823, overlap 1519823 TAAGAATAGAAAAAA TCAAGGG AAAATGAAA CCCTTGA TTTTTTCCTATTATT TERM 1828 1519832 - 1519854 + T 80 -4.9 -5.31545 | opp_overlap 1519823 1519832, overlap 1519823 TAAGAATAGAAAAAA TCAAGGG AAAATGAAA CCCTTGA TTTTTTCCTATTATT SPH_1644 1520059 - 1519865 - | hypothetical protein SPH_1645 1520444 - 1520253 - | hypothetical protein TERM 1829 1520342 - 1520323 - G 79 -3.5 -5.4756 | AATTTCAACAAAAAA GCCGTCA TATACT TGAGGGC ATACTCAGGATTAAC SPH_1647 1521305 - 1520793 - | hypothetical protein TERM 1830 1521338 - 1521325 - R 79 -4.5 -5.252 | opp_overlap 1521325, overlap 1521329 CACTCCTAGAAAAAA GGAGC CGAA ACTCC TTTCGATATAAGGCA SPH_1648 1522326 - 1521391 - | manganese-dependent inorganic pyrophosphatase TERM 1831 1522410 - 1522391 - R 79 -10 -3.32997 | TTTTGACAAAGGTAA GAGGAGTC AAAG GACTCCCC ACGATTCTTCAAAAT SPH_1649 1522696 - 1522397 - | hypothetical protein SPH_1650 1523435 - 1522686 - | methyltransferase SPH_1651 1523875 - 1523489 - | S1 RNA-binding domain-containing protein SPH_1652 1525250 - 1523850 - | Cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 1832 1523985 - 1523975 - GR 81 -6.8 -4.77157 | opp_overlap 1523975 CTAACTGACCAAAAA CCGT GTG ACGG TGGTCTAGGTGAGGT TERM 1833 1525464 - 1525495 + r 86 -8 -4.67697 | opp_overlap 1525473, overlap 1525473 CTCATTTCAAAGCTT GTGAAAAAAGACCC GTTG GGGTCTTAATTCGC TTTCTTGTTTTCAAG TERM 1834 1525473 - 1525486 + r 72 -8.1 -3.44891 | opp_overlap 1525473, overlap 1525464 AAGCTTGTGAAAAAA GACCC GTTG GGGTC TTAATTCGCTTTCTT TERM 1835 1525486 - 1525473 - R 90 -8.1 -5.01732 | opp_overlap 1525464 1525473 AAGCTTGTGAAAAAA GACCC GTTG GGGTC TTAATTCGCTTTCTT TERM 1836 1525539 - 1525522 - R 74 -5.5 -4.74801 | opp_overlap 1525524, overlap 1525524 CAAGCTCATGAAAAA GAGACCC AACC GGGTCTT TTCTTTAATCTTCGT TERM 1837 1525524 - 1525537 + r 90 -8.1 -4.99568 | opp_overlap 1525522 1525524 AGCTCATGAAAAAGA GACCC AACC GGGTC TTTTCTTTAATCTTC TERM 1838 1525537 - 1525524 - R 79 -8.1 -3.98658 | opp_overlap 1525524, overlap 1525522 AGCTCATGAAAAAGA GACCC AACC GGGTC TTTTCTTTAATCTTC rpsR 1525783 - 1525544 - | ribosomal protein S18 SPH_1654 1526285 - 1525815 - | single-stranded DNA-binding protein (SSB) (helix-destabilizingprotein) rpsF 1526587 - 1526297 - | ribosomal protein S6 TERM 1839 1526699 - 1526678 - R 74 -3.1 -5.34555 | overlap 1526680 TTATACTAGAAAAAA TTTTTTTAC GCAA GTAAAAACA CTAGAATTCGAAAAA TERM 1840 1526716 - 1526728 + r 74 -6.2 -4.50841 | opp_overlap 1526716, overlap 1526711 TAGAATTCGAAAAAA CGCC ACATG GGCG TTTTCCTATTCTTAT TERM 1841 1526728 - 1526716 - R 83 -6.2 -5.11033 | opp_overlap 1526716 1526711 TAGAATTCGAAAAAA CGCC ACATG GGCG TTTTCCTATTCTTAT asnS 1528083 - 1526740 - | asparaginyl-tRNA synthetase SPH_1657 1528468 - 1528103 - | glyoxalase family protein SPH_1658 1529648 - 1528461 - | aspartate aminotransferase (transaminase a) (aspat) SPH_1659 1530133 - 1529645 - | peptidase propeptide/YPEB domain-containing protein TERM 1842 1529710 - 1529700 - G 81 -5.4 -5.00895 | TCTACTAGATAAAAA TCAG ATC CTGA CTTAACTTCCCAGAT TERM 1843 1529869 - 1529887 + g 85 -8.9 -4.15044 | opp_overlap 1529871 CTTTACCAATCAGGA CAGCAAG CGCTT CTTGCTG TTTATTACGACCAAG SPH_1660 1530316 - 1530200 - | hypothetical protein SPH_1661 1530454 - 1531002 + | oxidoreductase TERM 1844 1531053 - 1531073 + T 72 -8.3 -3.35996 | opp_overlap 1531054, overlap 1531054 AGCTAGCCGCAAGCT ACTCAAAGC ACT GCTTTGAGG TTGTAGATAGAACTG TERM 1845 1531072 - 1531054 - T 84 -11.8 -2.53263 | opp_overlap 1531054 1531053 GCTAGCCGCAAGCTA CTCAAAGC ACT GCTTTGAG GTTGTAGATAGAACT TERM 1846 1531054 - 1531072 + T 84 -11.8 -2.61383 | opp_overlap 1531054, overlap 1531053 GCTAGCCGCAAGCTA CTCAAAGC ACT GCTTTGAG GTTGTAGATAGAACT TERM 1847 1531098 - 1531086 - T 71 -7.7 -3.58905 | AGGTTGTAGATAGAA CTGAC GAA GTCAG TAACATATATACGGT TERM 1848 1531218 - 1531163 - T 100 -14.4 -3.79482 | gap 1, opp_overlap 1531168, overlap 1531168 AAGAGTATAACATAA TAAAAGCGAACAAGACTACTTTTCTGA CAC TCAGAAGACTAG-CTTGTTCGCTTTTT TTCTCATTTATAAAC TERM 1849 1531213 - 1531168 - T 100 -14.3 -4.92791 | gap 1, opp_overlap 1531168, overlap 1531163 TATAACATAATAAAA GCGAACAAGACTACTTTTCTGA CAC TCAGAAGACTAG-CTTGTTCGC TTTTTTTCTCATTTA TERM 1850 1531168 - 1531213 + T 100 -16.5 -5.75599 | gap 1, opp_overlap 1531163 1531168 TATAACATAATAAAA GCGAACAAGACTACTTTTCTGA CAC TCAGAAGACTAG-CTTGTTCGC TTTTTTTCTCATTTA SPH_1662 1532008 - 1531280 - | hypothetical protein TERM 1851 1532086 - 1532052 - R 87 -13 -2.78354 | opp_overlap 1532053 1532055 1532061, overlap 1532061 CAACCAAGAAATTCA TTTGAAAAACCTCGGT TTG ACCGAGGTTTTTCTAT TTATTTGGGCCATCC TERM 1852 1532053 - 1532085 + r 100 -16.5 -4.42062 | opp_overlap 1532052 1532061, overlap 1532055 1532061 AACCAAGAAATTCAT TTGAAAAACCTCGGT TTG ACCGAGGTTTTTCTA TTTATTTGGGCCATC TERM 1853 1532055 - 1532083 + r 100 -19.1 -3.81557 | opp_overlap 1532052 1532061, overlap 1532053 1532061 CCAAGAAATTCATTT GAAAAACCTCGGT TTG ACCGAGGTTTTTC TATTTATTTGGGCCA TERM 1854 1532077 - 1532061 - R 100 -12.3 -4.63184 | opp_overlap 1532055 1532053 1532061, overlap 1532052 AATTCATTTGAAAAA CCTCGGT TTG ACCGAGG TTTTTCTATTTATTT TERM 1855 1532061 - 1532077 + r 100 -12.3 -5.30448 | opp_overlap 1532061 1532052, overlap 1532055 1532053 AATTCATTTGAAAAA CCTCGGT TTG ACCGAGG TTTTTCTATTTATTT SPH_1663 1532251 - 1532087 - | hypothetical protein TERM 1856 1532154 - 1532167 + g 82 -3.9 -5.37345 | opp_overlap 1532154 AAACTTGTTAAGATA GATAA GAAT TTATC TTTTTTCTCCTTGAA SPH_1664 1533913 - 1532318 - | hypothetical protein def2 1534335 - 1533925 - | polypeptide deformylase TERM 1857 1534419 - 1534453 + r 81 -8.1 -4.19648 | gap 1, opp_overlap 1534428, overlap 1534428 CCTTTCCCTCAACTG TAGC-AAAAAGCCATC CGAA GATGACTTTTTTGCTA TTTAATTTCTGTATA TERM 1858 1534443 - 1534428 - R 74 -5.4 -4.74801 | opp_overlap 1534419 1534428 CAACTGTAGCAAAAA GCCATC CGAA GATGAC TTTTTTGCTATTTAA TERM 1859 1534428 - 1534443 + r 74 -3.2 -5.32699 | opp_overlap 1534428, overlap 1534419 CAACTGTAGCAAAAA GCCATC CGAA GATGAC TTTTTTGCTATTTAA SPH_1666 1535242 - 1534451 - | glutathione S-transferase family protein TERM 1860 1534795 - 1534785 - G 76 -6.8 -4.42386 | opp_overlap 1534785 CCCCCACCTAGAAAA GGTG CTG CACC TGCTTGCCAGAATAG SPH_1667 1537951 - 1535255 - | calcium-transporting ATPase 1 (Golgi Ca(2+)-ATPase) TERM 1861 1538047 - 1538022 - H 100 -11.3 -5.40464 | opp_overlap 1538021 1538020, overlap 1537986 1537981 CACGACAAACAAAAA GAGACCTGTTA ATCA TAACAAGTCTC GCTGTTTAAGATAGG TERM 1862 1539360 - 1539336 - g 72 -3.6 -5.1101 | opp_overlap 1539341, overlap 1539337 1539341 CCATCAGTCAAAAAA CCAAACTCAT CTGCT ATGAGTTAGA TGGTATCATCCATAC SPH_1668 1538255 - 1539439 + | cation efflux family protein TERM 1863 1539473 - 1539434 - T 93 -8 -5.46129 | opp_overlap 1539434 CAAGAAACCAAAAAA GAATAGAGAAATCCTTTC ATGA GACGGGATTTTTCTATTC TTTTATACTCAATAA TERM 1864 1539434 - 1539473 + T 100 -12.4 -4.4767 | opp_overlap 1539434 CAAGAAACCAAAAAA GAATAGAGAAATCCTTTC ATGA GACGGGATTTTTCTATTC TTTTATACTCAATAA SPH_1669 1541453 - 1539582 - | ABC transporter, ATP-binding protein SPH_1670 1542634 - 1541450 - | tRNA nucleotidyltransferase/poly(A) polymerase family protein TERM 1865 1542611 - 1542633 + g 86 -10.6 -3.79787 | opp_overlap 1542612, overlap 1542612 TTCTAATACTGGTAA AGCCTTCTGA AAT TCAGAAGGCA TTTGCGTTAATCTCA TERM 1866 1542632 - 1542612 - G 100 -14.1 -3.6106 | opp_overlap 1542611 1542612 TCTAATACTGGTAAA GCCTTCTGA AAT TCAGAAGGC ATTTGCGTTAATCTC TERM 1867 1542612 - 1542632 + g 93 -14.1 -2.8739 | opp_overlap 1542612, overlap 1542611 TCTAATACTGGTAAA GCCTTCTGA AAT TCAGAAGGC ATTTGCGTTAATCTC dapB 1543413 - 1542646 - | dihydrodipicolinate reductase TERM 1868 1542943 - 1542964 + g 87 -6.5 -5.22006 | CTCAGCTGTTTTAAT GGCTGTTCC ACTC GGAGCATCC TTTTTCTTGTCATGA SPH_1672 1544538 - 1543690 - | hypothetical protein SPH_1673 1544914 - 1544540 - | hypothetical protein glmM 1546340 - 1544988 - | phosphoglucosamine mutase SPH_1675 1547143 - 1546364 - | putative lipoprotein SPH_1676 1547987 - 1547130 - | hypothetical protein TERM 1869 1547919 - 1547903 - G 79 -6.7 -4.58644 | AAGCAACAATCAAAA TATCAAT CAG ATTGATA GCTATCGTCCATGGA SPH_1677 1548123 - 1549091 + | thioredoxin reductase TERM 1870 1549125 - 1549096 - T 80 -5 -5.26316 | opp_overlap 1549099, overlap 1549099 CTAGTTTATAAAAAA GAACCACGAGTC ACATAG GATTCGTGGTTT TATAATTCATCCGCT TERM 1871 1549099 - 1549122 + T 89 -8.9 -4.56607 | opp_overlap 1549099 1549096 GTTTATAAAAAAGAA CCACGAGTC ACATAG GATTCGTGG TTTTATAATTCATCC TERM 1872 1549122 - 1549099 - T 80 -6.7 -4.72201 | opp_overlap 1549099, overlap 1549096 GTTTATAAAAAAGAA CCACGAGTC ACATAG GATTCGTGG TTTTATAATTCATCC SPH_1678 1550036 - 1549125 - | hypothetical protein SPH_1679 1551010 - 1550033 - | transporter SPH_1680 1551897 - 1551007 - | putative P-loop ATPase protein TERM 1873 1551941 - 1551919 - R 100 -11.4 -4.34402 | CTCCTTATATCAAAA GAAGTTTGGC AAC ACCAAACTTC AACTAGCTTATCCAA SPH_1681 1552329 - 1551949 - | endoribonuclease L-PSP, putative SPH_1682 1552927 - 1552340 - | GTP-binding protein clpX 1554144 - 1552936 - | ATP-dependent Clp protease, ATP-binding subunit ClpX SPH_1684 1554375 - 1554205 - | hypothetical protein folA 1554881 - 1554375 - | dihydrofolate reductase TERM 1874 1554988 - 1554967 - R 93 -8.1 -5.65678 | opp_overlap 1554967 ACAAAATAGAAAAAA TCTGTAAGA AATT TCCTACAGA TTTATCTATGTTTCC SPH_1686 1555529 - 1555011 - | DNA protection during starvation protein TERM 1875 1556011 - 1555988 - R 78 -2.4 -5.59962 | gap 1 TAAAACAAAGAAAAA GAGGG-TGCTA CTA TCACATCCCTC TTTCAAATCATCGCT SPH_1687 1557498 - 1556026 - | hypothetical protein TERM 1876 1557546 - 1557520 - R 74 -3.1 -5.24129 | gap 1 CTCTCCTATAAAAAA TGTAACAGACAT CTGA ATG-CTGTTCCA CCTAGCTTTTGCTAC tpiA 1558327 - 1557569 - | triose-phosphate isomerase TERM 1877 1557610 - 1557596 - G 70 -8.6 -3.33399 | GTCAAGCAAAGCCAA GAAGCT TTC AGCTTC AAGTGACGCACCACC TERM 1878 1557972 - 1557988 + g 81 -3 -5.5353 | overlap 1557972 GGAAGCATACCGTTC GCAAAG ATTGC TTTTGC TTTTTTGTTGATATC TERM 1879 1557972 - 1557982 + g 79 -5.4 -4.9251 | overlap 1557972 GGAAGCATACCGTTC GCAA AGA TTGC TTTTGCTTTTTTGTT SPH_1689 1559102 - 1558425 - | DNA replication protein DnaD metA 1560055 - 1559111 - | homoserine O-succinyltransferase TERM 1880 1559413 - 1559401 - G 70 -5.5 -4.45168 | opp_overlap 1559401 TGGCCAAAATAGAAA CCCCA ACC TGAGG TCCTTCTGATAAAAT TERM 1881 1560210 - 1560236 + r 70 -8 -3.22298 | opp_overlap 1560216, overlap 1560211 1560216 TATATCCTAGTGTAG AGAAAACAGCCC TAG GGACTGTTTTCA TTAATAATGCATAAG TERM 1882 1560211 - 1560235 + r 82 -11.5 -2.53164 | opp_overlap 1560216, overlap 1560210 1560216 ATATCCTAGTGTAGA GAAAACAGCCC TAG GGACTGTTTTC ATTAATAATGCATAA TERM 1883 1560230 - 1560216 - R 82 -7.8 -4.54047 | opp_overlap 1560211 1560210 1560216 CTAGTGTAGAGAAAA CAGCCC TAG GGACTG TTTTCATTAATAATG TERM 1884 1560216 - 1560230 + r 71 -5.6 -4.46615 | opp_overlap 1560216, overlap 1560211 1560210 CTAGTGTAGAGAAAA CAGCCC TAG GGACTG TTTTCATTAATAATG apt 1560749 - 1560237 - | adenine phosphoribosyltransferase TERM 1885 1560689 - 1560705 + g 73 -8.7 -3.76411 | opp_overlap 1560688 AAGGACTAATATCAC GGAAGGT AAT GCCTTCC TTTGGATAATTTTCA SPH_1692 1561594 - 1560836 - | SAM-dependent methyltransferase TERM 1886 1561887 - 1561875 - g 82 -7.7 -4.52857 | AGGTTGCAGATAAAA CTGAC GAA GTCAG TAATCATACGTACGG SPH_1693 1561802 - 1561972 + | hypothetical protein TERM 1887 1561992 - 1562018 + T 77 -10.2 -2.55722 | opp_overlap 1561993 ACTTCCCTAGCAAAA AGGAGAGAAGCA TTT TGTTTCTCTCCC TAGATTAACTGATAT TERM 1888 1562017 - 1561993 - T 100 -11.5 -4.72272 | opp_overlap 1561992 CTTCCCTAGCAAAAA GGAGAGAAGCA TTT TGTTTCTCTCC CTAGATTAACTGATA SPH_1694 1563225 - 1562095 - | multiple sugar-binding transport ATP-binding protein MsmK TERM 1889 1563336 - 1563314 - R 100 -11.4 -6.12458 | opp_overlap 1563314 CAAAAAAATAAAAAA GTTCTGTGCA ACT TGCACAAAAC TTTAGAGAATATCGG TERM 1890 1563314 - 1563336 + r 80 -9.2 -3.56643 | opp_overlap 1563314 CAAAAAAATAAAAAA GTTCTGTGCA ACT TGCACAAAAC TTTAGAGAATATCGG TERM 1891 1563504 - 1563475 - R 77 -8.7 -3.61232 | opp_overlap 1563480, overlap 1563480 TTTTTTAGAGAAATA CAAAAGAGCTAGC TTTA GCTAACTCTTTTC CTATGCGGAGAGAGG TERM 1892 1563499 - 1563480 - R 95 -8.6 -4.87328 | opp_overlap 1563480, overlap 1563475 TAGAGAAATACAAAA GAGCTAGC TTTA GCTAACTC TTTTCCTATGCGGAG TERM 1893 1563480 - 1563499 + r 74 -6.4 -4.34402 | opp_overlap 1563480 1563475 TAGAGAAATACAAAA GAGCTAGC TTTA GCTAACTC TTTTCCTATGCGGAG SPH_1696 1564250 - 1563675 - | isochorismatase codY 1565038 - 1564250 - | GTP-sensing transcriptional pleiotropic repressor CodY TERM 1894 1565133 - 1565170 + r 79 -8.9 -3.82442 | opp_overlap 1565136, overlap 1565136 ACTTGCATTGACTTA CAATTTAATTAAAAA CCAGAATA TTTTTAATTAAATTG TTCCTTTTCTATTGA TERM 1895 1565278 - 1565296 + r 93 -7.4 -5.42164 | opp_overlap 1565278 TCCTTATATAAAAAA GCGATTCA TTT TGAACCGC TTTTTCTTATTTATC TERM 1896 1565296 - 1565278 - R 100 -9.6 -5.36441 | opp_overlap 1565278 TCCTTATATAAAAAA GCGATTCA TTT TGAACCGC TTTTTCTTATTTATC SPH_1698 1566877 - 1565303 - | DEAD/DEAH box helicase TERM 1897 1566528 - 1566540 + g 77 -4.9 -4.89063 | ATATGGGCACCAGAT TTAAG AGC CTTAA TTTGTTTTTCAATGC SPH_1699 1568302 - 1567076 - | major facilitator:oxalate:formate antiporter TERM 1898 1567685 - 1567695 + g 93 -5.4 -5.65927 | AGTCATCCCTTGCGT CAGA GAG TCTG TTTTTTCTTTCCCTG SPH_1700 1568494 - 1569810 + | pyridine nucleotide-disulfide oxidoreductase YkgC TERM 1899 1569849 - 1569833 - f 74 -9.4 -3.07994 | opp_overlap 1569833, overlap 1569835 TTTAATCGTATCGAA CAGCCC TCTTT GGGCTG TTTTTACTTCTGCGG TERM 1900 1569833 - 1569849 + F 100 -9.4 -4.93365 | opp_overlap 1569833 1569835 TTTAATCGTATCGAA CAGCCC TCTTT GGGCTG TTTTTACTTCTGCGG SPH_1701 1569909 - 1571252 + | Mur ligase family protein SPH_1702 1571252 - 1572034 + | cobyric acid synthase TERM 1901 1572052 - 1572084 + F 100 -10.7 -4.16397 | opp_overlap 1572059, overlap 1572059 AAAGGAAAATGATAT CAAAGAACTCCGTTA TCT TGTCGGAGTTTTTTG TCTTTTCTTTTACCC TERM 1902 1572059 - 1572077 + F 86 -5.2 -5.65678 | opp_overlap 1572059, overlap 1572052 AATGATATCAAAGAA CTCCGTTA TCT TGTCGGAG TTTTTTGTCTTTTCT SPH_1703 1572160 - 1573242 + | Xaa-Pro dipeptidase TERM 1903 1573217 - 1573228 + T 70 -4.4 -4.78077 | TCTTTACAAGCACCA GCAA AGAT TTGC TTTATTTTGATTAAA TERM 1904 1573607 - 1573575 - T 95 -12.9 -3.68886 | opp_overlap 1573575 ATTAATTTATCCAAA GGATTTAGTTCTGTA CTG CACAGAACTAAGTCC TTTTAGTTTTACCTT TERM 1905 1573575 - 1573607 + T 100 -14.4 -4.69549 | opp_overlap 1573575 ATTAATTTATCCAAA GGATTTAGTTCTGT ACTGC ACAGAACTAAGTCC TTTTAGTTTTACCTT TERM 1906 1574784 - 1574830 + T 89 -11.8 -3.26471 | opp_overlap 1574787, overlap 1574787 1574789 1574824 TTAATTTCATAATAA AAACACCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGGTGTAG TTCATGTACACCTGA TERM 1907 1574827 - 1574787 - T 100 -17.2 -5.19328 | opp_overlap 1574784 1574787 1574789 1574824 ATTTCATAATAAAAA CACCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTGGGGTG TAGTTCATGTACACC TERM 1908 1574787 - 1574827 + T 100 -17.9 -2.81547 | opp_overlap 1574787, overlap 1574784 1574789 1574824 ATTTCATAATAAAAA CACCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGGTG TAGTTCATGTACACC TERM 1909 1574789 - 1574825 + T 95 -14.7 -2.95521 | opp_overlap 1574787, overlap 1574787 1574784 1574824 TTCATAATAAAAACA CCCCAAAAGTTAGAT TTTTTCT GTCTAACTTTTGGGG TGTAGTTCATGTACA TERM 1910 1574996 - 1574984 - T 71 -7.7 -3.60214 | AGGTTAAGGATAGAA CTGAC CAA GTCAG TAACATATACACACT SPH_1709 1575514 - 1575053 - | hypothetical protein TERM 1911 1575342 - 1575314 - G 86 -11.7 -3.31263 | AGGGTAGCCTGATAA GAGGTCAAGCAAG AAA CTTGCTAGTCCTC CGACTACCGCTCCTT SPH_1710 1576265 - 1575492 - | phosphomethylpyrimidine kinase TERM 1912 1575789 - 1575799 + g 76 -6.8 -4.43213 | TAAATCATGCAATTT CTGC GCT GCAG TTTTCATGTCTTCCA truA 1577004 - 1576255 - | tRNA pseudouridine synthase A TERM 1913 1577321 - 1577303 - g 93 -7.5 -5.50723 | opp_overlap 1577303 1577302 GTATCAAAAGAAAAA CTTAGGA ATCAA TCCTAAG CTCTCTTCTGAAGTA SPH_1713 1577184 - 1577345 + | hypothetical protein SPH_1712 1578468 - 1577317 - | major facilitator transporter SPH_1714 1579337 - 1578708 - | hypothetical protein TERM 1914 1579133 - 1579146 + g 71 -6.7 -4.13767 | opp_overlap 1579132, overlap 1579122 TTAAGCGCAAGAGAC TTGGC CTTT GCCAA TTTTCACCTACACGG phnA 1579678 - 1579340 - | alkylphosphonate utilization operon protein PhnA TERM 1915 1579797 - 1579780 - R 86 -5.6 -5.68039 | opp_overlap 1579779 1579780 AAATTTAGAAAAAAA CCGATA TCAATC TATCGG CTTTTCTACATTTAC cmk 1580480 - 1579809 - | cytidylate kinase TERM 1916 1580115 - 1580125 + g 70 -5.4 -4.44667 | opp_overlap 1580109, overlap 1580112 CATGACAATCCCGCC TTGC TGG GCAA TTTCTTGTTGGAGAG SPH_1717 1580965 - 1580489 - | hypothetical protein SPH_1718 1581107 - 1581223 + | ferredoxin SPH_1719 1582238 - 1581285 - | bactoprenol glucosyl transferase TERM 1917 1581618 - 1581603 - G 83 -3.3 -5.54894 | AATGGAGTAAAAAAA GAGTT GCCTAA AACTC CAACTGGTCTTGCCA TERM 1918 1582173 - 1582153 - G 77 -9.8 -3.53091 | ATTTCTGTTTCCAAA TCTGGAAG TAAAG CTTCCAGA GCCTGATAAAAAAGA TERM 1919 1582202 - 1582187 - G 90 -7.6 -5.252 | opp_overlap 1582183 1582187 GAGCCTGATAAAAAA GAGGAA GTAC TTCCTC TTCGTTTAAACAAGG galE 1583259 - 1582240 - | UDP-glucose 4-epimerase TERM 1920 1583423 - 1583435 + r 71 -7.7 -3.58905 | CCATGGGTATGGTTA CTGAC TTC GTCAG TTCTATCTACAACCT TERM 1921 1583467 - 1583449 - R 78 -10.4 -2.61383 | opp_overlap 1583448 1583465, overlap 1583448 AGTTCTATCTACAAC CTCAAAAC AGT GTTTTGAG CTGACTTCGTCAGTT TERM 1922 1583465 - 1583483 + r 76 -9.6 -2.87931 | opp_overlap 1583449 1583448, overlap 1583448 1583468 TCAAAACAGTGTTTT GAGCTGAC TTC GTCAGTTC TATCTACAACCTCAA TERM 1923 1583468 - 1583480 + r 71 -7.7 -3.58905 | overlap 1583465 AAACAGTGTTTTGAG CTGAC TTC GTCAG TTCTATCTACAACCT TERM 1924 1583513 - 1583493 - R 72 -8.3 -3.35996 | overlap 1583494 CAGTTCTATCTACAA CCTCAAAGC AGT GCTTTGAGT AACCCGCGGCTAGTT TERM 1925 1583512 - 1583494 - R 84 -11.8 -2.61383 | overlap 1583493 AGTTCTATCTACAAC CTCAAAGC AGT GCTTTGAG TAACCCGCGGCTAGT SPH_1722 1584663 - 1583560 - | oxidoreductase, DadA family protein TERM 1926 1584135 - 1584147 + g 76 -3.3 -5.27335 | AGCCTGATGCTAACG GTGTC AGA GTCAC TTTTTCTTTGACCAG SPH_1723 1585477 - 1584680 - | hypothetical protein SPH_1724 1586141 - 1585464 - | bcl-2 family protein TERM 1927 1586321 - 1586311 - R 91 -2.6 -6.04324 | TCAAAAAATAAAAAA TAAA CAG TTTA TTCAGAAAATTCTTG TERM 1928 1586643 - 1586668 + r 81 -7.6 -4.3534 | opp_overlap 1586643 1586645, overlap 1586665 GCTTTACTTACGGAA TAGGCTAGTG CTGTGT CTCTAGCCTA TTTTAATAATTAGGA TERM 1929 1586937 - 1586917 - R 91 -2.5 -5.96521 | overlap 1586901 1586899 1586898 1586921 AGGAATTAAAAAAAA TTAATTCCC CTA GGGAAATGA GCCCTACTGCTAACA TERM 1930 1586933 - 1586921 - R 78 -7.7 -4.14345 | overlap 1586901 1586899 1586898 1586917 ATTAAAAAAAATTAA TTCCC CTA GGGAA ATGAGCCCTACTGCT TERM 1931 1587764 - 1587796 + r 70 -4.2 -4.69549 | ATTAATTTATCCGAA GGATTTAGTTCTGT ACTGC ACAAGGCTAAGTCC TTTTAGTTTTACCTT SPH_1726 1588588 - 1587755 - | integrase core subunit TERM 1932 1589152 - 1589112 - R 100 -9.2 -5.18726 | overlap 1589114 GTTTCATAATAAAAA CACCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTAGGGGG CAGTTCATCATTTCA TERM 1933 1589150 - 1589114 - R 100 -10.4 -4.22377 | overlap 1589112 TTCATAATAAAAACA CCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTAGGG GGCAGTTCATCATTT tkt1 1591447 - 1589477 - | transketolase TERM 1934 1591073 - 1591059 - G 70 -2.7 -5.1101 | TTAGCAGCTAAAAAA CGCTC TGCTT GGGCG AAACCAACGGCAGTA SPH_1730 1592179 - 1591484 - | D-allulose-6-phosphate 3-epimerase SPH_1731 1593275 - 1592190 - | PTS system, IIC component SPH_1733 1594089 - 1593640 - | PTS system, IIA component SPH_1734 1594495 - 1594067 - | PTS system, nitrogen regulatory component IIA, putative TERM 1935 1594370 - 1594383 + g 82 -3.9 -5.46276 | opp_overlap 1594339 1594370 TCTCTCACGGTAATA TAGAA GCTC TTCTA TTTTTTCTGTATCTT SPH_1735 1595951 - 1594488 - | putative transcription antiterminator BglG family protein TERM 1936 1595184 - 1595203 + g 74 -4.4 -5.00616 | opp_overlap 1595184 CTTCATCCTAAAATA TTGTTCAA TTTC TTGAATAA TTTTTTGACAGACAC TERM 1937 1596011 - 1596028 + r 85 -4.1 -5.69262 | opp_overlap 1596027 ATATACTTCGCATTT TGTCCTT TGCA ATGGACA TTTTTGTTTTTATCA TERM 1938 1596451 - 1596474 + r 90 -8.2 -4.91046 | opp_overlap 1596453, overlap 1596453 ATCCATCGTATAAAA AACTGCAATC CACA GATTGCAGTC TTTCTTTATTTTCTA TERM 1939 1596472 - 1596453 - R 100 -10.8 -5.26316 | opp_overlap 1596451 1596453 CCATCGTATAAAAAA CTGCAATC CACA GATTGCAG TCTTTCTTTATTTTC TERM 1940 1596453 - 1596472 + r 93 -10.8 -4.03308 | opp_overlap 1596453, overlap 1596451 CCATCGTATAAAAAA CTGCAATC CACA GATTGCAG TCTTTCTTTATTTTC SPH_1736 1598816 - 1596480 - | cation transport ATPase TERM 1941 1598497 - 1598509 + g 77 -7.7 -4.28651 | overlap 1598491 AGAGCAACTTCCTGA CCATC ACG GATGG TTTTGACCTTTTCCT TERM 1942 1599578 - 1599564 - g 76 -2.1 -5.39755 | opp_overlap 1599570, overlap 1599569 1599570 CACAATGATAAAAAA CCAAA TCCAC TCTGG TGGTTTATCCGCATC SPH_1737 1598949 - 1599698 + | acyltransferase family protein TERM 1943 1599709 - 1599728 + T 74 -5.7 -4.65153 | opp_overlap 1599709 CATAGAAGAAATGAA CCTTGGC CAAACA GCTAAGG TTTTCATTTATATAG TERM 1944 1599895 - 1599875 - T 80 -6.9 -4.62054 | opp_overlap 1599875 1599879 CTAATCAAATCAAAA GCCACTCTA CAA TAGAGTAAC TTTAAGATTGTCCAT TERM 1945 1599948 - 1599928 - T 100 -11.9 -4.89009 | opp_overlap 1599928 1599940, overlap 1599940 1599945 ATACTCAATGAAAAA GCCCTCTGA AAA TCAGAGAGC TGATTTGAGCTCGGG TERM 1946 1599928 - 1599948 + T 76 -9.7 -2.92613 | opp_overlap 1599928 1599940 1599945, overlap 1599940 ATACTCAATGAAAAA GCCCTCTGA AAA TCAGAGAGC TGATTTGAGCTCGGG SPH_1738 1600604 - 1599990 - | CadD TERM 1947 1600546 - 1600532 - G 74 -4.4 -4.86731 | GCTGTGCAAATAAAA TAATTA AAA TAATTA AATAATCGATACTGG TERM 1948 1600776 - 1600801 + r 73 -7.8 -3.86897 | opp_overlap 1600781 1600796, overlap 1600776 AGTGACTACTTCCAT GTAAAGTATA ACATAC TATACTTTAC TTTGTAAAGAGTGGG TERM 1949 1600832 - 1600874 + r 79 -8.4 -4.04149 | opp_overlap 1600840, overlap 1600833 1600871 CTCTTCTAGGGGGCT TGCATACAGTTACTCGGCTT GAA AAGCCGAGTAACTGCGCACC TTTATGGTGTAATTA TERM 1950 1600833 - 1600873 + r 85 -11.9 -3.01766 | opp_overlap 1600840, overlap 1600832 1600871 TCTTCTAGGGGGCTT GCATACAGTTACTCGGCTT GAA AAGCCGAGTAACTGCGCAC CTTTATGGTGTAATT TERM 1951 1600866 - 1600840 - R 100 -18.2 -2.87132 | opp_overlap 1600833 1600832 GGGGGCTTGCATACA GTTACTCGGCTT GAA AAGCCGAGTAAC TGCGCACCTTTATGG TERM 1952 1600972 - 1600953 - R 100 -10 -5.4756 | opp_overlap 1600953 1600964 AACCTCAATAAAAAA GCCCTCTG AAGT CAGAGAGC TGATTTGAGCCCGGG TERM 1953 1601177 - 1601162 - R 100 -9 -6.23545 | GTGAAACAAAAAAAA TCTCCC CGAA GGGAGA AAAGCTGGTTTATTT TERM 1954 1601285 - 1601266 - R 79 -5.7 -5.1925 | opp_overlap 1601266 TGACAACGCAAAAAA GCTACCC AATTTA GAGTAGC TTCATTATCAAGATA rpsO 1601689 - 1601420 - | ribosomal protein S15 TERM 1955 1601501 - 1601511 + g 80 -2.4 -5.53991 | TGCAAGCAAGTTACG ACGG CGA CCGA TTTTTTTCATCAATC TERM 1956 1601526 - 1601543 + g 70 -5.5 -4.38219 | ATTTTTTTCATCAAT CCACGGT AAGT AGCGTGG TCTTTTTTGTGTTGT SPH_1740 1602459 - 1601830 - | YwnB TERM 1957 1603270 - 1603295 + H 100 -14.1 -5.80364 | AAGGTGGAACCACGT TGCGACGTCCT TTCG AGGATGTCGCA TTTTTTTATTAGGAT SPH_1741 1603318 - 1603641 + | hypothetical protein TERM 1958 1603988 - 1604000 + G 75 -7.7 -3.9712 | TGGGAGTTGGTCCAG CCATC GAA GATGG TTTCTACTACGATAC TERM 1959 1604068 - 1604050 - g 70 -9.6 -2.54276 | overlap 1604049 ATCTCTAACGAAGAC CTTCCTCG TAT CGAAGAAG AAATGCAAAAAATCG thrS 1603699 - 1605642 + | threonyl-tRNA synthetase TERM 1960 1605674 - 1605658 - T 100 -12.3 -4.46926 | opp_overlap 1605658 GAGTCTAGCATAAAA GCCTCCA ATC TGGAGGC TTTTTCTCATCTATT TERM 1961 1605658 - 1605674 + T 100 -12.3 -4.97666 | opp_overlap 1605658 GAGTCTAGCATAAAA GCCTCCA ATC TGGAGGC TTTTTCTCATCTATT SPH_1743 1606665 - 1605691 - | histidine kinase SPH_1744 1607335 - 1606658 - | response regulator TERM 1962 1607433 - 1607403 - H 82 -9.9 -3.68265 | opp_overlap 1607405 1607430, overlap 1607430 AAACTGAATTTGAAA TAGCCTGTTTTTA GCCAG TACAAACAGGCTA TGCTACTAGCTAATT SPH_1745 1607491 - 1608564 + | hypothetical protein TERM 1963 1608638 - 1608593 - T 80 -7.1 -4.59081 | opp_overlap 1608598, overlap 1608598 TAAATGTATACAAAA CAAAAGACCTAGAATACATAC TTTC ATGTGCATTCTAAGTCTTTTT AAATAGAATCTAATA TERM 1964 1608598 - 1608633 + T 70 -4.1 -4.66609 | opp_overlap 1608593 1608598 GTATACAAAACAAAA GACCTAGAATACATA CTTTCA TGTGCATTCTAAGTC TTTTTAAATAGAATC TERM 1965 1608633 - 1608598 - T 89 -7 -5.23292 | opp_overlap 1608598, overlap 1608593 GTATACAAAACAAAA GACCTAGAATACATAC TTTC ATGTGCATTCTAAGTC TTTTTAAATAGAATC SPH_1746 1608957 - 1608655 - | hypothetical protein TERM 1966 1609024 - 1609008 - R 86 -5.1 -5.65927 | opp_overlap 1609008 TATCCAAAGAAAAAA GAGGG CATTTAT CCCTC TTAATCCTTCATCTG SPH_1747 1609462 - 1609025 - | Rrf2 family protein TERM 1967 1610432 - 1610447 + H 93 -7.6 -5.59357 | opp_overlap 1610430 ACATAAAAAGTCACA GCTAGA GAAA TCTAGC TTTTTTTGATATACT SPH_1749 1610492 - 1611142 + | iron-dependent transcriptional regulator TERM 1968 1611185 - 1611163 - T 74 -9.2 -3.14881 | opp_overlap 1611163 CAAGTCCCCTACCAA CCCTGAAAGT TTT ATTTTCAGGG TTTTCTTATCTATTT TERM 1969 1611163 - 1611185 + T 100 -11.4 -4.91357 | opp_overlap 1611163 CAAGTCCCCTACCAA CCCTGAAAGT TTT ATTTTCAGGG TTTTCTTATCTATTT TERM 1970 1611721 - 1611765 + T 100 -15.2 -4.84527 | opp_overlap 1611732, overlap 1611723 TGGAGTATTTTATGA TCGATGAGAAAGACCAAGCC GACTG GGCTTGGTCTTTCTTATCTC TTTTTAGTATCTAGG TERM 1971 1611723 - 1611763 + T 100 -22.2 -4.03909 | opp_overlap 1611732, overlap 1611721 GAGTATTTTATGATC GATGAGAAAGACCAAGCC GACTG GGCTTGGTCTTTCTTATC TCTTTTTAGTATCTA TERM 1972 1611754 - 1611732 - T 100 -13.5 -3.98214 | opp_overlap 1611723 1611721 ATGATCGATGAGAAA GACCAAGCC GACTG GGCTTGGTC TTTCTTATCTCTTTT dtd 1612202 - 1611759 - | D-tyrosyl-tRNA(Tyr) deacylase spoT 1614454 - 1612232 - | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase TERM 1973 1614565 - 1614535 - H 93 -5 -5.97979 | AGAATAAGAAAAAAA TAATTCAAAATT GCTTGAT AATTCTGAATTA TTGGCCCATAATATA TERM 1974 1614795 - 1614815 + H 72 -8.3 -3.35996 | overlap 1614796 AACTAGCCGCAGGTT GCTCAAAGC ACT GCTTTGAGG TTGTAGATAAGACTG TERM 1975 1614796 - 1614814 + H 84 -11.8 -2.61383 | overlap 1614795 ACTAGCCGCAGGTTG CTCAAAGC ACT GCTTTGAG GTTGTAGATAAGACT TERM 1976 1614842 - 1614826 - H 87 -10.9 -3.48924 | opp_overlap 1614823 TGAGGTTGTAGATAA GACTGAC AAA GTCAGTC ACATATATACGGCAA TERM 1977 1615002 - 1615017 + H 73 -7.6 -3.7948 | ATTTCTATCTTTGCT CTCCTA ATGT TAGGAG TTTGCTGCCTGTTCC TERM 1978 1615244 - 1615271 + H 74 -5.5 -4.788 | opp_overlap 1615244 1615237 TTGATAAATTGATAA CCAGCCTGTCT TCATCT AGTCATGCTGG TTTTTAAGTTCATTT SPH_1755 1615470 - 1616099 + | metallo-beta-lactamase superfamily protein TERM 1979 1616194 - 1616158 - T 89 -8.8 -4.46212 | gap 1, opp_overlap 1616158 CTTTCTATTACAAAA GGCATCCTATCAAG-GT TTTC ACACGTGATTGGATGCC TTTTTTCTGATGACT TERM 1980 1616158 - 1616194 + T 95 -8.8 -5.31877 | gap 1, opp_overlap 1616158 CTTTCTATTACAAAA GGCATCCTATCAAG-GT TTTC ACACGTGATTGGATGCC TTTTTTCTGATGACT SPH_1756 1618114 - 1616222 - | endopeptidase O TERM 1981 1617824 - 1617838 + g 71 -7.2 -3.91716 | opp_overlap 1617823 1617813 AAAATCCGCAAAAGT TTCCAA TTC TTGGAA TTCTTTAAGGAGTGG TERM 1982 1618269 - 1618233 - H 84 -8.1 -4.46212 | opp_overlap 1618228 1618225 1618233 CTTTCCATGATAAAA CGCATAATTCCAAGTTT TTT ACACTTGATACTATGCG TTTTATAATTTAGAA SPH_1757 1618405 - 1619127 + | manganese transport system ATP-binding protein MntA SPH_1758 1619124 - 1619972 + | manganese transport system membrane protein MntB TERM 1983 1620357 - 1620343 - g 80 -6.4 -4.75954 | opp_overlap 1620351 1620356, overlap 1620339 1620348 AAAACTGAAAACAAA GACTAC TTC GCAGTC AGCGACGGCGTTGAT SPH_1759 1620004 - 1620933 + | manganese ABC transporter substrate-binding lipoprotein (adhesin B) (Saliva-binding protein) SPH_1760 1621056 - 1621547 + | thiol peroxidase (scavengase P20) TERM 1984 1621554 - 1621594 + T 100 -9.8 -4.75308 | opp_overlap 1621554 GCCCTATAGAAAAAA TCCTCTGTCACAAAGAGT TCCCT GCTCTTTGAAACGGAGGA TTTTTGAATATTAGT TERM 1985 1621594 - 1621554 - T 100 -9.1 -5.36441 | opp_overlap 1621554 GCCCTATAGAAAAAA TCCTCTGTCACAAAGAG TTCCCTG CTCTTTGAAACGGAGGA TTTTTGAATATTAGT SPH_1761 1624351 - 1621643 - | efflux ABC transporter, permease protein TERM 1986 1621932 - 1621920 - G 80 -7.7 -4.32034 | TCATTATTATGAAAA CCAAG AAC CTTGG TAGTGGAGAGTTCAC TERM 1987 1623550 - 1623589 + g 73 -5.6 -4.61482 | overlap 1623547 1623544 1623551 1623553 1623556 AATTAGTCTGAGCCT TGTCAAGGGTCTCTTGCC CCTT GTCTAGAGACTCTTGTCC TTCTTTTTTCAAAAG TERM 1988 1623551 - 1623588 + g 72 -9.1 -3.36166 | overlap 1623547 1623544 1623550 1623553 1623556 ATTAGTCTGAGCCTT GTCAAGGGTCTCTTGCC CCTT GTCTAGAGACTCTTGTC CTTCTTTTTTCAAAA TERM 1989 1623553 - 1623586 + g 75 -10.3 -3.23795 | overlap 1623547 1623544 1623551 1623550 1623556 TAGTCTGAGCCTTGT CAAGGGTCTCTTGCC CCTT GTCTAGAGACTCTTG TCCTTCTTTTTTCAA TERM 1990 1623882 - 1623901 + g 73 -2.1 -5.27938 | opp_overlap 1623885, overlap 1623885 TAAGTATGGTCTTTT AAAGAGG AATGAC CCTCTTC TTTTTCTTTAAAACT SPH_1762 1625054 - 1624353 - | macrolide export ATP-binding/permease protein MacB TERM 1991 1626809 - 1626819 + r 73 -4.6 -4.92385 | GCCTTGATTTCAATT GGGT ATA GCCC TTTTCTTTAGCTGTG TERM 1992 1627756 - 1627736 - R 83 -6.2 -5.13344 | ATACTAACATAAAAA GCCTAGAA ATCAA TTCTAGAC TTACAATTTTTTATT SPH_1765 1628459 - 1627767 - | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase TERM 1993 1628485 - 1628499 + r 75 -7.1 -4.27297 | CTCCTTTAAATTTTC CGAGG TTTCC CCTCG TTTATCTATTCTATT TERM 1994 1629714 - 1629677 - R 100 -7.1 -5.88476 | opp_overlap 1629677 AAAATAAATAAAAAA CGCATCATATCAGGTGT TCAA AAACGTGATACAATGCG TTTAATAGACTATAA ileS 1632572 - 1629780 - | isoleucyl-tRNA synthetase TERM 1995 1632637 - 1632607 - R 83 -6.2 -5.10877 | ATAACAAATTAAAAA CCACGACTTCCA AAAAGGA CGAAAATCGTGG TACCACCTTTATTCG SPH_1768 1632941 - 1632825 - | hypothetical protein SPH_1769 1633708 - 1632920 - | cell-division initiation protein TERM 1996 1632991 - 1633015 + g 79 -9.3 -3.84712 | opp_overlap 1632993 CTTGAGGACTCACTA CAGGAGTTGGA GTT TCCACTTCCTG TTTAATCTGAGCTTC SPH_1770 1634502 - 1633717 - | YlmH protein TERM 1997 1633834 - 1633818 - G 73 -9.5 -3.25942 | opp_overlap 1633814 ATTTTCTCACACTAA TCAAGTC TCC GACTTGA ACAGTATAATCCGAT SPH_1771 1634762 - 1634499 - | yggt family protein TERM 1998 1634639 - 1634621 - G 75 -9.6 -3.32769 | overlap 1634614 GTTGCAAAGGAGCAA GCACTGGT TTT ACCAATGC TACAATCCAACGACC SPH_1772 1635301 - 1634762 - | YlmF protein TERM 1999 1634876 - 1634888 + g 84 -7.7 -4.70879 | opp_overlap 1634875 TGTTAACAGATACAT GGTAG AAG CTACC TTTTTCAAATTTCCA SPH_1773 1635982 - 1635311 - | YggS family pyridoxal phosphate protein TERM 2000 1635864 - 1635835 - G 70 -9.3 -3.25223 | gap 1, opp_overlap 1635826, overlap 1635838 CACCGATATGATGAA CACCTAGCGGAAGC AAG GCTTCCGCT-GTCG GTACATCTACATACT TERM 2001 1635861 - 1635838 - G 81 -11.8 -2.50988 | gap 1, opp_overlap 1635826, overlap 1635835 CGATATGATGAACAC CTAGCGGAAGC AAG GCTTCCGCT-G TCGGTACATCTACAT ftsZ 1637246 - 1635987 - | cell division protein FtsZ ftsA 1638636 - 1637263 - | cell division protein FtsA TERM 2002 1638835 - 1638825 - R 71 -5.4 -4.56775 | AGCTGCTTGTAAAAA CTCT CTA AGAG CAAAAAAGAAAGCTC TERM 2003 1638864 - 1638843 - R 74 -3 -5.27779 | TCTAAGAGCAAAAAA GAAAGCTC TGTGTT AAGCTTCC TTTGCAATCATTTTT SPH_1776 1639559 - 1638855 - | hypothetical protein SPH_1777 1640261 - 1639650 - | hypothetical protein SPH_1778 1641621 - 1640248 - | UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase TERM 2004 1641004 - 1641014 + g 70 -5.4 -4.35524 | GGAATCCATACCGTC TGCA ATT TGCA TTTTCCCTTTAGCAA TERM 2005 1641717 - 1641727 + r 70 -8.2 -3.32294 | opp_overlap 1641716 1641717, overlap 1641716 ATTTTTATAGCAAAT GCGC TTC GCGC TTGTCAAAACTTTCC SPH_1779 1642749 - 1641706 - | D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) recR 1643522 - 1642926 - | recombination protein RecR TERM 2006 1643451 - 1643436 - G 74 -6.1 -4.42788 | opp_overlap 1643435 1643441 CCCAATCGTATAAAA GGCCA GACGCG TGGCC GTCTTAATCCCGATA SPH_1781 1645575 - 1643533 - | penicillin-binding protein 2B TERM 2007 1643828 - 1643816 - G 71 -4.1 -4.87786 | overlap 1643817 GCAACCTGATAAAAA CCTTG GTG CAAGA TACTCATATCGGAGT TERM 2008 1644839 - 1644852 + g 84 -8.1 -4.67353 | GCTTCTGCTTCTTCC GCTGG GAGA CCAGC TTTTTCACTGGATAC TERM 2009 1645426 - 1645441 + g 79 -3.2 -5.52384 | overlap 1645427 TGTAATCTTGGTCTG ACTAGC TGAG GCTAGC TTTTTTTCGTAAAAA TERM 2010 1645502 - 1645487 - G 70 -5.4 -4.42974 | overlap 1645488 TGCATATACAACAAA CGACCA ATAA TGGTCA TAAAGAGTAAAATGA SPH_1782 1645790 - 1646641 + | RpiR family transcriptional regulator TERM 2011 1646633 - 1646665 + T 100 -16.5 -4.67608 | opp_overlap 1646636, overlap 1646636 CAAAAACGTGTAAGA AAATCCTAGTTTGGC TGA GCCAAACTAGGATTG TTTTGTCTTAAAATG TERM 2012 1646662 - 1646636 - T 100 -18.2 -4.6635 | opp_overlap 1646633 1646636 AAACGTGTAAGAAAA TCCTAGTTTGGC TGA GCCAAACTAGGA TTGTTTTGTCTTAAA TERM 2013 1646636 - 1646662 + T 100 -18.2 -4.44211 | opp_overlap 1646636, overlap 1646633 AAACGTGTAAGAAAA TCCTAGTTTGGC TGA GCCAAACTAGGA TTGTTTTGTCTTAAA SPH_1783 1647541 - 1646657 - | glucokinase SPH_1784 1648476 - 1647559 - | N-acetylneuraminate lyase TERM 2014 1648502 - 1648515 + r 85 -6.7 -5.39681 | CTATTATTTTTATTT TCTGC TAAA GCAGA TTTTTCTTTACTTCT SPH_1785 1649289 - 1648645 - | hypothetical protein SPH_1786 1649874 - 1649566 - | hypothetical protein SPH_1787 1650459 - 1650007 - | hypothetical protein SPH_1788 1651525 - 1650686 - | ABC transporter membrane-spanning permease - sugar transport SPH_1789 1652428 - 1651541 - | sugar ABC transporter, permease protein TERM 2015 1652036 - 1652050 + g 73 -8.6 -3.65529 | CAAGATACCTGATAG TGGATC ATA GATCCA TTTCCATACAACTGT SPH_1790 1653987 - 1652659 - | ABC transporter substrate-binding protein - sugar transport TERM 2016 1652699 - 1652727 + g 72 -4.5 -4.73388 | overlap 1652700 GTTTCGTTCGCTTTT TCAGTGAAGGCTT TCA AAGCGTCCGCTGG TTTTTCGTCACCATT SPH_1791 1654800 - 1654102 - | putative N-acetylmannosamine-6-P epimerase TERM 2017 1654950 - 1654919 - R 79 -8.8 -3.77219 | overlap 1654921 ACTAGCCAAGTCAAA CAGCTCCTCTAAAA GTAC TTTCAGAGGAGCAA GTCGACCTATAATAG TERM 2018 1654948 - 1654921 - R 95 -13.6 -3.46783 | overlap 1654919 TAGCCAAGTCAAACA GCTCCTCTAAAA GTAC TTTCAGAGGAGC AAGTCGACCTATAAT SPH_1792 1656083 - 1654980 - | putative oxidoreductase YjhC SPH_1793 1656958 - 1656125 - | ABC transporter membrane-spanning permease - sugar transport SPH_1794 1657842 - 1656958 - | ABC transporter, permease protein TERM 2019 1657935 - 1657953 + r 71 -3.2 -5.05301 | opp_overlap 1657939 CCTACTGAACAGCCT CAAATAAA TCA TTTAATTG TTTTTCTGCTTCTTT SPH_1795 1659258 - 1657921 - | ABC transporter substrate-binding protein - sugar transport SPH_1796 1659729 - 1659277 - | hypothetical protein TERM 2020 1659976 - 1659998 + r 70 -4.3 -4.82901 | gap 1, overlap 1659980 TCATTCAGTATCTCC TCA-ATCTTC ACAA GAAGATCTGA TTTTTCTAGCGACAA TERM 2021 1660677 - 1660702 + r 80 -10.5 -3.06384 | opp_overlap 1660677, overlap 1660674 1660679 ATGTCATCAAAAAAA GATAGCAGGCT TGAA AACCTGCTATC TCCTTCTATTTTTAC TERM 2022 1660702 - 1660677 - R 100 -12.7 -5.52986 | opp_overlap 1660677 1660674 1660679 ATGTCATCAAAAAAA GATAGCAGGCT TGAA AACCTGCTATC TCCTTCTATTTTTAC SPH_1797 1663572 - 1660744 - | neuraminidase SPH_1798 1664156 - 1663929 - | hypothetical protein TERM 2023 1664267 - 1664255 - R 71 -6.3 -4.24623 | opp_overlap 1664233 1664255 1664254 1664263, overlap 1664233 1664261 TTAAATATACATAAA GATAG ATT CTATC ACTTTTTATAAGTGT TERM 2024 1664436 - 1664423 - R 70 -2.4 -5.35224 | opp_overlap 1664423, overlap 1664418 TCCATAAAAAGAAAA CAGA AACTCA TCTG TTTTTATACTCAATG TERM 2025 1664490 - 1664508 + r 78 -10.4 -2.61383 | overlap 1664489 GCTAGCCGCATGATG CTCAAAAC ACT GTTTTGAG GTTGTAGATAAGACT TERM 2026 1664558 - 1664530 - R 82 -8.9 -3.98842 | overlap 1664522 1664520 1664542 GATAAGACTGACAAA GTCAGCTCAAAAC ACC GTTTTGAGGTGGC AGATAGAACTGACGA TERM 2027 1664582 - 1664564 - R 76 -9.6 -2.87931 | overlap 1664567 1664575 TTGAGGTGGCAGATA GAACTGAC GAA GTCAGCTC AAAACACCGTTTTGA TERM 2028 1664579 - 1664567 - R 71 -7.7 -3.58905 | overlap 1664564 1664575 AGGTGGCAGATAGAA CTGAC GAA GTCAG CTCAAAACACCGTTT TERM 2029 1664603 - 1664575 - R 73 -8.9 -3.24425 | overlap 1664567 1664564 1664587 GATAGAACTGACGAA GTCAGCTCAAAAC ACC GTTTTGAGGTGGC AGATAGAACTGACGA TERM 2030 1664627 - 1664609 - R 76 -9.6 -2.87931 | opp_overlap 1664624 1664625, overlap 1664612 1664624 TTGAGGTGGCAGATA GAACTGAC GAA GTCAGCTC AAAACACTGTTTTGA TERM 2031 1664624 - 1664612 - R 71 -7.7 -3.58905 | overlap 1664609 AGGTGGCAGATAGAA CTGAC GAA GTCAG CTCAAAACACTGTTT TERM 2032 1664625 - 1664643 + r 78 -10.4 -2.61383 | opp_overlap 1664609 1664624, overlap 1664624 AACTGACGAAGTCAG CTCAAAAC ACT GTTTTGAG GTTGTAGATAAGACT TERM 2033 1664693 - 1664665 - R 82 -8.9 -3.98842 | overlap 1664657 1664655 1664677 GATAAGACTGACAAA GTCAGCTCAAAAC ACC GTTTTGAGGTGGC AGATAGAACTGACCA TERM 2034 1664717 - 1664699 - R 76 -9.6 -2.87931 | overlap 1664702 1664710 TTGAGGTGGCAGATA GAACTGAC CAA GTCAGCTC AAAACACCGTTTTGA TERM 2035 1664714 - 1664702 - R 71 -7.7 -3.58905 | overlap 1664699 1664710 AGGTGGCAGATAGAA CTGAC CAA GTCAG CTCAAAACACCGTTT TERM 2036 1664738 - 1664710 - R 73 -8.9 -3.24425 | overlap 1664702 1664699 1664722 GATAGAACTGACCAA GTCAGCTCAAAAC ACC GTTTTGAGGTGGC AGATAGAACTGACGA TERM 2037 1664759 - 1664747 - R 71 -7.7 -3.58905 | AGGTGGCAGATAGAA CTGAC GAA GTCAG TAACATATATACGGC TERM 2038 1665100 - 1665061 - R 89 -8.8 -4.4648 | opp_overlap 1665059 1665061 ATTTCCATGATAAAA CGCATAGTATCAAG TTTTTTTAATCC CCTGATACTATGCG TGTTTGTAATTTTTA SPH_1800 1666121 - 1665141 - | xylan esterase 1 TERM 2039 1665816 - 1665797 - G 79 -8.6 -3.9693 | overlap 1665808 CATCCATGGAAACAA CACCGTAA CCAG CTACGGTG AAGCCCAGCATGTCG TERM 2040 1666099 - 1666113 + g 80 -6.4 -4.7373 | TAGGTCTTAATTTCT TCTAGC AAA GCTGGA TTTTTCATAGCATGC TERM 2041 1666278 - 1666266 - R 84 -5.5 -5.42514 | opp_overlap 1666266 1666259, overlap 1666259 TTAGAAACGAAAAAA GAGCA TTT CGCTC TCTCTTCTGTTTATA TERM 2042 1666446 - 1666411 - R 72 -4.8 -4.81851 | opp_overlap 1666411 AGCCAAACCTAAAAA CTAGCTTAAGTTTTCC TTAG AGAAAGCTTAATCCAG ATGTTCTTTCTTTTC recG 1668453 - 1666438 - | ATP-dependent DNA helicase RecG alr 1669575 - 1668472 - | alanine racemase acpS 1669927 - 1669565 - | holo-(acyl-carrier-protein) synthase TERM 2043 1669960 - 1669939 - R 100 -10.9 -4.26076 | opp_overlap 1669938 1669936 TCATTCTCATCAAAA GGAGTTGAG ATTC CCCAACTCC ATCCTTTTCACTTAT SPH_1804 1671003 - 1669972 - | 3-deoxy-7-phosphoheptulonate synthase SPH_1805 1672036 - 1671005 - | 3-deoxy-7-phosphoheptulonate synthase TERM 2044 1671399 - 1671429 + g 70 -3.3 -4.8743 | overlap 1671411 AGCGGATTCCCAGTT GTTTCCACTTCTT TTCCT AGGAAAAGGAAAC TTTGTTTGTTTTGAG TERM 2045 1671939 - 1671949 + g 73 -5.4 -4.52589 | GCTTCTAGCTCTTGA TCAC GCT GTGA TTTTCTCTCCAAAGC TERM 2046 1672098 - 1672060 - R 93 -9.7 -4.13995 | opp_overlap 1672059 1672060 1672070 TCCTTATAAAGCAAA CGGATACCAAGTAAAAA TTTAC TTTTCACAAGGTATCCG CTTCTAAACTATCTC secA 1674630 - 1672117 - | preprotein translocase, SecA subunit TERM 2047 1674757 - 1674734 - R 83 -6 -5.0925 | opp_overlap 1674732 1674736 TTTGAAAAGGAAAAA GAGGCTAGTT TCCA AGCTAACCTC TCTGACTTTTATGAT SPH_1807 1675063 - 1674776 - | hypothetical protein SPH_1808 1675724 - 1675074 - | ABC transporter, ATP-binding protein SPH_1809 1676369 - 1675728 - | hypothetical protein SPH_1810 1677153 - 1676362 - | hypothetical protein TERM 2048 1677129 - 1677102 - G 89 -12.2 -3.71205 | overlap 1677098 1677119 GAAAAAGCAAAGTAA GCAAGACATAAA CAAA TTTATGCCTTGC AAAAGTTAAGAGAGG TERM 2049 1678980 - 1678938 - R 86 -5.8 -5.54338 | opp_overlap 1678938 TAATCAAAATAAAAA TGACTGTATCTATAGCTC CATAAAC AAATCATAGATACAGTCA TTTTTTAGTTCCTAC TERM 2050 1678938 - 1678980 + r 74 -3 -5.30155 | gap 1, opp_overlap 1678938 TAATCAAAATAAAAA TGACTGTATCTATAGCT CCATAAACAA ATC-ATAGATACAGTCA TTTTTTAGTTCCTAC SPH_1815 1679335 - 1678985 - | hypothetical protein SPH_1816 1679819 - 1679475 - | hypothetical protein TERM 2051 1679890 - 1679871 - R 86 -5 -5.59357 | opp_overlap 1679871 ATTATATCAAAAAAA TCCGGAAC TGTC ATTCCAGA TTCTACTTTTTTATT SPH_1817 1681211 - 1679901 - | GTP-binding protein EngA SPH_1818 1681938 - 1681225 - | nitroreductase family protein SPH_1819 1682831 - 1681935 - | primosomal protein DnaI SPH_1820 1684001 - 1682832 - | replication initiation and membrane attachment protein TERM 2052 1682888 - 1682908 + g 76 -7.6 -4.14175 | gap 1 TCTTACGTTCTAGTT CCAGACGAG TTTC CTCG-CTGG TTTCATTCTTATATT TERM 2053 1683240 - 1683250 + g 81 -6.8 -4.69549 | opp_overlap 1683240 GATTTCTGCCAAGAA CTGC AGG GCAG TTTTACTTTTAGCTT TERM 2054 1683280 - 1683308 + g 70 -9 -3.23975 | gap 1, overlap 1683278 TCCTTGATAATGGTT GTTTCCTTAGGAC TAAA GTCC-GAGGAAAC TGGTTTTTGAGCAAT TERM 2055 1683936 - 1683893 - G 85 -8.8 -4.40003 | gap 1 TTGTATAAAGATAAA GGCTCAGTGCCTCCTGACCGA TAA TCGGG-AGGTAGCACTGTACC AGAGATGAGGTATCT nrdR 1684475 - 1684002 - | transcriptional regulator NrdR SPH_1822 1684615 - 1684980 + | GntR family transcriptional regulator SPH_1823 1684985 - 1685680 + | ABC transporter, ATP-binding protein SPH_1824 1685697 - 1686464 + | ABC transporter, ATP-binding protein TERM 2056 1686582 - 1686534 - T 74 -9.1 -3.08776 | opp_overlap 1686539, overlap 1686539 AAGTCTTTAAAATTA GAAAACGCATAGTATCAAGTGTT AAA AATCCTTGATATTATGCGTTTTT TGTGAGCTGACTTAT TERM 2057 1686577 - 1686539 - T 93 -9 -4.67635 | opp_overlap 1686539, overlap 1686534 TTTAAAATTAGAAAA CGCATAGTATCAAGTGTT AAA AATCCTTGATATTATGCG TTTTTTGTGAGCTGA TERM 2058 1686539 - 1686577 + T 100 -13.4 -5.26316 | opp_overlap 1686534 1686539 TTTAAAATTAGAAAA CGCATAGTATCAAGTGTT AAA AATCCTTGATATTATGCG TTTTTTGTGAGCTGA TERM 2059 1686811 - 1686796 - T 76 -6.8 -4.59773 | opp_overlap 1686796 1686800 TTTCACCTTTAAAAA CCTCGC TTTC GCAAGG CTCTTCTATTTATAA SPH_1825 1688016 - 1686817 - | ABC transporter membrane-spanning permease - Na+ export TERM 2060 1687511 - 1687522 + g 81 -3 -5.54338 | overlap 1687518 GCACCTGCTGCAATT GTTT GAAT AAAC TTTTTATTTTCCTTG SPH_1826 1688906 - 1688013 - | ABC transporter ATP-binding protein - Na+ export TERM 2061 1689114 - 1689102 - g 82 -7.7 -4.52857 | AGGTTGCAGATAAAA CTGAC GAA GTCAG CTCAAAACACTGTTT TERM 2062 1689115 - 1689133 + G 72 -10.4 -2.61383 | opp_overlap 1689114, overlap 1689114 AACTGACGAAGTCAG CTCAAAAC ACT GTTTTGAG GTTGTGGATAGAACT SPH_1827 1689029 - 1689220 + | chlorohydrolase TERM 2063 1689691 - 1689674 - f 74 -5.5 -4.79174 | AGGGAACTAAGAAAA CGACTAC AAAG GAAGTCG CATTCATCGAAAAGT TERM 2064 1690455 - 1690473 + G 79 -8.8 -4.03234 | CATTCCAGGGGCCTT GACCTCGG TGG CTGGGGTC TTTATCTACGGGCAC TERM 2065 1690527 - 1690537 + G 71 -6.8 -4.05861 | TATCGGCATCGTGAT TGGC TGT GCCA TTATCTTTTATCTAG SPH_1828 1690216 - 1690833 + | SNARE associated Golgi protein TERM 2066 1690845 - 1690866 + T 80 -7.3 -4.58395 | opp_overlap 1690845 TTGACACGTAAAAAA TCCGTTTGG TTTC CCAAGTGGA TTTTTAAAGCGTAGA TERM 2067 1691007 - 1690982 - T 73 -6.9 -4.03234 | opp_overlap 1690984 1690998, overlap 1690984 CCGCCGTGATAGAAA CACCTGAAATC TAAT GGTTTCAGGTA TTCGGAAACTTTGAG TERM 2068 1690984 - 1691005 + T 74 -9.5 -3.03635 | opp_overlap 1690984 1690982, overlap 1690998 GCCGTGATAGAAACA CCTGAAATC TAAT GGTTTCAGG TATTCGGAAACTTTG TERM 2069 1691016 - 1691037 + T 70 -7.3 -3.71645 | opp_overlap 1691016 TCAGGTATTCGGAAA CTTTGAGAC ACTA GGCTCAAAG TTTAGGTATGGAATT TERM 2070 1691114 - 1691151 + T 100 -16.5 -4.66535 | opp_overlap 1691117 1691122, overlap 1691115 1691122 AAATATTGTTTTCAA CCACAAAATCCGTTTGG TTTC CCAAGCGGATTTTGTGC TTTATTTTGAAACTT TERM 2071 1691115 - 1691150 + T 100 -20 -3.38836 | opp_overlap 1691117 1691122, overlap 1691114 1691122 AATATTGTTTTCAAC CACAAAATCCGTTTGG TTTC CCAAGCGGATTTTGTG CTTTATTTTGAAACT TERM 2072 1691148 - 1691117 - T 95 -14.6 -2.71144 | opp_overlap 1691115 1691114 1691122, overlap 1691122 TATTGTTTTCAACCA CAAAATCCGTTTGG TTTC CCAAGCGGATTTTG TGCTTTATTTTGAAA TERM 2073 1691143 - 1691122 - T 89 -8.7 -4.5442 | opp_overlap 1691115 1691114 1691122, overlap 1691117 TTTTCAACCACAAAA TCCGTTTGG TTTC CCAAGCGGA TTTTGTGCTTTATTT TERM 2074 1691122 - 1691143 + T 100 -10.9 -4.68612 | opp_overlap 1691122 1691117, overlap 1691115 1691114 TTTTCAACCACAAAA TCCGTTTGG TTTC CCAAGCGGA TTTTGTGCTTTATTT SPH_1829 1692040 - 1691153 - | fructokinase TERM 2075 1692172 - 1692138 - R 83 -11 -3.10012 | opp_overlap 1692144, overlap 1692144 AATCTTACTATCTAA TAAAAACGAACAAACA TGT CATTTGTTCGTTTTCA CATTAGAGAGGATTG TERM 2076 1692144 - 1692166 + r 71 -6.4 -4.19238 | opp_overlap 1692144 1692138 ACTATCTAATAAAAA CGAACAAA CATGTCA TTTGTTCG TTTTCACATTAGAGA TERM 2077 1692166 - 1692144 - R 88 -7.8 -5.11063 | opp_overlap 1692144, overlap 1692138 ACTATCTAATAAAAA CGAACAAACA TGT CATTTGTTCG TTTTCACATTAGAGA SPH_1830 1694072 - 1692189 - | pts system, sucrose-specific IIBC component TERM 2078 1692644 - 1692668 + g 72 -3.6 -5.06414 | gap 1, opp_overlap 1692649 CAAGTGTTTCATTTT GAAG-AGCTGC TGGC GCAACTTCTTC TTTTTCTTCAGCCAC SPH_1831 1694396 - 1694199 - | hypothetical protein SPH_1832 1694449 - 1695903 + | sucrose-6-phosphate hydrolase (Sucrase) (invertase) TERM 2079 1696546 - 1696504 - T 91 -13.2 -3.21218 | gap 1, opp_overlap 1696499 1696498, overlap 1696544 AGCTCCTATTATCAA TG-TTTCCATTTCTTTTCT CCCGTC AGAAAAGAAATGGAAATCA AGAATATCTTGACCC TERM 2080 1696558 - 1696544 - T 73 -7.2 -3.98952 | opp_overlap 1696499 1696498, overlap 1696504 GAAAAGAAATGGAAA TCAAGA ATA TCTTGA CCCGGGAAAAACCAG TERM 2081 1696852 - 1696887 + T 75 -9.9 -2.54586 | opp_overlap 1696855 1696860, overlap 1696860 AAAAGTATTTAAACA CAAGAAAACTCAGAC CGATTC GTCTGAGTTTTTATG ATCTTAAATTTTCGA TERM 2082 1696884 - 1696855 - T 75 -8 -3.84587 | opp_overlap 1696852 1696860, overlap 1696860 AGTATTTAAACACAA GAAAACTCAGAC CGATTC GTCTGAGTTTTT ATGATCTTAAATTTT TERM 2083 1696860 - 1696879 + T 88 -7.9 -4.98436 | opp_overlap 1696855 1696860, overlap 1696852 TTAAACACAAGAAAA CTCAGAC CGATTC GTCTGAG TTTTTATGATCTTAA TERM 2084 1696879 - 1696860 - T 88 -7.9 -4.95302 | opp_overlap 1696860 1696852, overlap 1696855 TTAAACACAAGAAAA CTCAGAC CGATTC GTCTGAG TTTTTATGATCTTAA SPH_1835 1698157 - 1696883 - | hydroxymethylglutaryl-CoA reductase, degradative TERM 2085 1698072 - 1698124 + g 85 -6.6 -5.02074 | gap 3, opp_overlap 1698082 1698083 1698085, overlap 1698083 1698116 AGACTAGCTTGTCTC TCAGGACTAAGGAGCGCCT-GAGCT TTTAGC AGCTCGAGGCGCTC-TTGGTA-TGA TTTTTTAGAAAATCC TERM 2086 1698116 - 1698082 - G 79 -10.8 -3.21099 | gap 1, opp_overlap 1698072 1698083, overlap 1698083 1698085 GTCTCTCAGGACTAA GGAGCGCCT-GAGCT TTTAGC AGCTCGAGGCGCTCT TGGTATGATTTTTTA TERM 2087 1698083 - 1698115 + g 100 -14.3 -3.40042 | gap 1, opp_overlap 1698082 1698083 1698085, overlap 1698072 TCTCTCAGGACTAAG GAGCGCCT-GAGCT TTTAGC AGCTCGAGGCGCTC TTGGTATGATTTTTT TERM 2088 1698115 - 1698083 - G 93 -14.3 -2.52516 | gap 1, opp_overlap 1698083 1698072, overlap 1698082 1698085 TCTCTCAGGACTAAG GAGCGCCT-GAGCT TTTAGC AGCTCGAGGCGCTC TTGGTATGATTTTTT TERM 2089 1698113 - 1698085 - G 77 -11.1 -2.80016 | gap 1, opp_overlap 1698083 1698072, overlap 1698083 1698082 TCTCAGGACTAAGGA GCGCCT-GAGCT TTTAGC AGCTCGAGGCGC TCTTGGTATGATTTT SPH_1836 1699353 - 1698157 - | hydroxymethylglutaryl-CoA synthase TERM 2090 1699431 - 1699409 - R 93 -7.8 -5.53079 | opp_overlap 1699407 1699409 AAAAGAGAGAAAAAA GACTTGATTC ACC AAATCAAGCC TCTTATTGGTCATCA SPH_1837 1699657 - 1699460 - | hypothetical protein SPH_1838 1700165 - 1699776 - | IS4 family transposase TERM 2091 1699834 - 1699876 + g 85 -7.2 -4.98531 | overlap 1699821 1699860 ATTCGTAATCCGAAG CGTTTACGATGATTTCGATA GGT TGTTGAAAACATTTTAAACG TTTTTACTTTGGCAA SPH_1839 1700913 - 1700464 - | hypothetical protein TERM 2092 1700567 - 1700580 + g 76 -6.7 -4.35483 | opp_overlap 1700560 ATGACAACCAAGGTC GCACT TGCC AGTGC TTTATTATAGTCCCC SPH_1840 1701673 - 1700915 - | hypothetical protein TERM 2093 1701756 - 1701731 - R 100 -11.3 -5.81412 | opp_overlap 1701731 TGGACTCAAAAAAAA TCTTTGCCATG AAAT CATGACAAAGA TTGATTACTCATTTT TERM 2094 1701731 - 1701756 + r 79 -9.1 -3.44825 | opp_overlap 1701731 TGGACTCAAAAAAAA TCTTTGCCATG AAAT CATGACAAAGA TTGATTACTCATTTT SPH_1841 1703767 - 1701788 - | Stk1 TERM 2095 1701961 - 1701977 + g 70 -8.1 -3.7282 | opp_overlap 1701964, overlap 1701964 CTTCCTTAATCCCAA CAATTTG AAT CAAATTG TTCTTAGTAAACTCC SPH_1842 1704504 - 1703764 - | protein phosphatase PrpC sun 1705832 - 1704519 - | ribosomal RNA small subunit methyltransferase B fmt 1706760 - 1705825 - | methionyl-tRNA formyltransferase TERM 2096 1706166 - 1706190 + g 71 -7.1 -3.83026 | opp_overlap 1706166 TTGGAGAGAAGGTAA CCTGACTCGTA TCC TGCGGTTCAGG TTTGATATCACCAGC SPH_1845 1709169 - 1706773 - | primosomal protein N' (ATP-dependent helicase PriA)(replication factor Y) TERM 2097 1707691 - 1707711 + g 77 -5.3 -5.00616 | ATAACCACGGCGATT GAGCATGAG AAC CACCTGCTC TTTTTTAACCAGACG TERM 2098 1709237 - 1709214 - R 87 -6.8 -5.47159 | opp_overlap 1709214 TTGCAATAGAAAAAA TAAGATTGAG TCCC CCCAACCTTA AATTTTTTCACCATC rpoZ 1709549 - 1709235 - | DNA-directed RNA polymerase, omega subunit gmk 1710200 - 1709574 - | guanylate kinase SPH_1848 1711943 - 1710330 - | hypothetical protein TERM 2099 1712018 - 1712008 - R 82 -5.4 -5.31275 | TTCTACCATAAAAAA GTGA TTT TCAC AAACCTAAAATAGAA SPH_1849 1712388 - 1712134 - | addiction module antitoxin SPH_1850 1712646 - 1712392 - | prevent-host-death family protein TERM 2100 1712883 - 1712866 - R 83 -7.7 -4.77925 | opp_overlap 1712866 AAAAAATCTCAAAAA GCCTACC TTTC GGTAGAC TTAGTTTGTTTCTAT SPH_1851 1713981 - 1712884 - | hypothetical protein SPH_1852 1714731 - 1713991 - | SAM-dependent methyltransferase TERM 2101 1714777 - 1714808 + r 70 -8 -3.26779 | gap 1, opp_overlap 1714775 1714772, overlap 1714772 GATAGAAAATTAGGA GCCTTACGATGGAGC CGA GCTCCAAGG-AAGGC TATCTATTTTCCGAG TERM 2102 1715042 - 1715023 - R 89 -8.6 -4.63748 | opp_overlap 1715023 AAATAAGCAAAGAAA CCCAGTTG ACTA CAACTGAG TTCATCTTCTAAGCA SPH_1853 1715404 - 1715051 - | putative iojap-like protein SPH_1854 1715917 - 1715417 - | isochorismatase family protein SPH_1855 1716511 - 1715918 - | hypothetical protein nadD 1717140 - 1716511 - | nicotinate (nicotinamide) nucleotide adenylyltransferase TERM 2103 1716610 - 1716592 - G 70 -8.8 -3.33815 | ACCTTGGGCAAGGAA GTCCCGCA CCA TGCTGGAC GAGATATCCATGAGC SPH_1857 1717503 - 1717192 - | hypothetical protein TERM 2104 1717588 - 1717562 - R 85 -10.4 -3.34013 | opp_overlap 1717559 1717562, overlap 1717573 GACGGTCGGAACTAA TTTTCCAAAGAT TTC ATCTTTGAAAAA TGGATTTCCTGACCT TERM 2105 1717685 - 1717695 + r 84 -6.8 -5.10933 | ATGAGCTCACTTTGT TCGC TCA GCGA TTTTGTTTTAAATAA SPH_1858 1718809 - 1717703 - | GTP-binding protein TERM 2106 1717733 - 1717759 + g 74 -6.4 -4.36262 | overlap 1717722 1717735 TCGTGTGACGACGGC GACGCCTTCTGG TGC CCAAACGGCGAC TTTTGCTGTGCCTGT yqeG 1719339 - 1718812 - | HAD family phosphatase TERM 2107 1719105 - 1719117 + g 76 -3.3 -5.31545 | CAAATTTCTCAACTG CTCGT TGA ACGCG TTTTTTGGTGTTATT SPH_1860 1720262 - 1719354 - | CorA - magnesium and cobalt transporter SPH_1861 1720879 - 1720319 - | small conductance mechanosensitive ion channel SPH_1864 1722294 - 1723247 + | integral membrane protein SPH_1865 1723467 - 1723270 - | chlorohydrolase TERM 2108 1723336 - 1723318 - G 72 -10.4 -2.61383 | opp_overlap 1723317, overlap 1723317 AGTTCTATCCACAAC CTCAAAAC GGT GTTTTGAG CTGACTTCGTCAGTT TERM 2109 1723381 - 1723363 - G 72 -10.4 -2.61383 | opp_overlap 1723362 1723379, overlap 1723362 AGTTCTATCCACAAC CTCAAAAC GGT GTTTTGAG CTGACTTCGTCAGTT TERM 2110 1723379 - 1723397 + g 71 -9.6 -2.87931 | opp_overlap 1723363 1723362, overlap 1723362 1723382 TCAAAACGGTGTTTT GAGCTGAC TTC GTCAGTTC TATCTACAACCTCAA TERM 2111 1723426 - 1723408 - G 72 -10.4 -2.61383 | overlap 1723407 AGTTCTATCTACAAC CTCAAAAC GGT GTTTTGAG CAGCCTGCGGCTAGC TERM 2112 1723525 - 1723481 - R 84 -6.1 -5.31877 | gap 2 ATTGAGTATAAAAAA GAAAACTTCAGACCAATCCAC AAAAG GTGAAT-A-TCTGAAGTTTTC TTTTATTTATAAGTA SPH_1866 1723752 - 1723528 - | hypothetical protein SPH_1867 1723936 - 1723757 - | hypothetical protein SPH_1868 1725275 - 1723938 - | hypothetical protein TERM 2113 1724945 - 1724957 + g 70 -7.7 -3.64103 | CAACCTGACGTACTC GACCT TCT AGGTC TTTCCAGTCTACCTG SPH_1869 1726779 - 1725268 - | hypothetical protein SPH_1870 1729163 - 1726791 - | preprotein translocase subunit SecA SPH_1871 1729596 - 1729156 - | accessory secretory protein Asp3 SPH_1872 1731128 - 1729593 - | accessory secretory protein Asp2 SPH_1873 1732692 - 1731112 - | accessory secretory protein Asp1 SPH_1874 1733919 - 1732702 - | translocase, putative SPH_1875 1734881 - 1733976 - | glycosyl transferase family protein SPH_1876 1736077 - 1734881 - | glycosyl transferase family protein TERM 2114 1735255 - 1735267 + g 72 -3.4 -5.07053 | CTGCACTCCATGTCA CAAG CATCA CTTG TTTTTTAGACTGATT TERM 2115 1736103 - 1736117 + r 76 -2.8 -5.42259 | ACCTCATGTAAGATC TGATTG CTG CAACCA TTTTTTTCGGAATGG SPH_1877 1737306 - 1736086 - | glycosyl transferase family protein SPH_1878 1738215 - 1737331 - | glycosyl transferase family protein SPH_1879 1740665 - 1738212 - | glycosyl transferase family protein SPH_1880 1741685 - 1740675 - | hypothetical protein SPH_1882 1743508 - 1742630 - | exopolysaccharide biosynthesis protein, acetyltransferase TERM 2116 1744810 - 1744833 + r 70 -8.2 -3.2241 | opp_overlap 1744812, overlap 1744809 GAGACTGAATTCCAA CATTTGACGA TAAA TCGCCAAATG CTTTTCTAAAGGGTA SPH_1885 1759947 - 1745650 - | cell wall surface anchor family protein TERM 2117 1760047 - 1760059 + r 79 -9.1 -3.41084 | overlap 1760045 1760043 TTTGATTAATTTGAA CCGAG TTA CTCGG TCTGTTTCTCTATAT SPH_1886 1760608 - 1760348 - | Spn1, transposase Orf2 TERM 2118 1761259 - 1761244 - H 76 -7.6 -3.97446 | AGAAAGAAATTGAAA GTCTCT TGGA AGAGAC CATTGCCCAACAGAG SPH_1890 1761668 - 1761889 + | hypothetical protein trx 1761906 - 1762220 + | thioredoxin TERM 2119 1762229 - 1762253 + F 93 -7.9 -5.4756 | opp_overlap 1762229 1762231 GAGCTAATCAAACGA GAGACCAAGTA CTT TCTTTGGTCTC TTTTTTCTTGCCCTT TERM 2120 1762468 - 1762483 + F 100 -10.4 -4.69664 | ATTTGGTATTTTTTA GCTCCC TAAT GGGAGC TTTTTGCGTGCTCTG SPH_1892 1762526 - 1763059 + | NADPH-dependent 7-cyano-7-deazaguanine reductase TERM 2121 1763156 - 1763144 - g 73 -7.7 -3.83205 | AGGTTGTAGATGAAA CTGAC GAA GTCAG CTTAAAACACTGTTT SPH_1893 1763071 - 1763514 + | hypothetical protein TERM 2122 1763496 - 1763524 + T 100 -13.9 -4.81851 | opp_overlap 1763496 GTATCATACGAAAAA GCCCTGTTCCTCA AGA TGAGGAGCAAGGC TTTTTGAGTTTCAAT TERM 2123 1763524 - 1763496 - T 100 -13.9 -4.82667 | opp_overlap 1763496 GTATCATACGAAAAA GCCCTGTTCCTCA AGA TGAGGAGCAAGGC TTTTTGAGTTTCAAT SPH_1894 1764207 - 1763539 - | aquaporin Z - water channel protein TERM 2124 1764241 - 1764231 - R 71 -5.4 -4.56597 | opp_overlap 1764231 TCCTTTTTTCAAAAA CTAG ATA CTAG TCTATCAAAAGTAGG SPH_1895 1764872 - 1764318 - | hypothetical protein SPH_1896 1765095 - 1764940 - | hypothetical protein pepF2 1766914 - 1765118 - | oligoendopeptidase F TERM 2125 1766472 - 1766488 + g 86 -4.4 -5.46698 | gap 1 GCCTTCTCCACATCT GCCC-CT AAGT AGTGGGC TTTTTTGATTTTAGC SPH_1898 1767668 - 1766925 - | hypothetical protein prmA 1768620 - 1767670 - | ribosomal protein L11 methyltransferase SPH_1900 1769186 - 1768758 - | 7,8-dihydro-8-oxoguanine-triphosphatase SPH_1901 1770255 - 1769188 - | peptidase, M50 family protein SPH_1902 1770744 - 1770274 - | hypothetical protein TERM 2126 1770947 - 1770934 - R 79 -5.2 -5.16206 | AAATCAATATAAAAA GCCC GCGAAA GGGC TAATAAATCTATAAA SPH_1903 1771487 - 1771035 - | hypothetical protein SPH_1904 1771703 - 1771524 - | hypothetical protein TERM 2127 1771759 - 1771727 - R 73 -8.5 -3.21593 | opp_overlap 1771736 1771738, overlap 1771725 1771736 1771738 TACCTCCTGACAACA CCATTATAACACGTG TTA CACGTATTGTAAAGG AGTGATACTTATTAT SPH_1905 1772019 - 1771840 - | hypothetical protein SPH_1907 1772697 - 1773968 + | chromosome segregation helicase TERM 2128 1774326 - 1774339 + T 89 -6.7 -5.64006 | opp_overlap 1774325 1774326 ATACAACAGGAAAAG CCTTG GAAC CAAGG TTTTTTTGCTTAAAT TERM 2129 1774484 - 1774455 - T 90 -8 -5.28983 | opp_overlap 1774455 CCCAAAACACAAAAA GTCCTCTTTCCA CTATTT TAGAAAGAGAAC TTTTTCTTTAGGAGA TERM 2130 1774455 - 1774484 + T 76 -3.6 -5.27335 | opp_overlap 1774455 CCCAAAACACAAAAA GTCCTCTTTCCA CTATTT TAGAAAGAGAAC TTTTTCTTTAGGAGA SPH_1909 1775832 - 1774513 - | sucrose-6-phosphate hydrolase TERM 2131 1775380 - 1775395 + g 73 -7.6 -4.11773 | overlap 1775394 ATCTGGCAAGTCTGC TCCAGT TGCA ACTGGA TTTTGGGAAATCTTT SPH_1910 1776687 - 1775842 - | ABC transporter membrane-spanning permease - sugar transport TERM 2132 1775928 - 1775913 - G 78 -7.6 -4.41353 | CTACATAGACCAAAA TCAACG GAAT CGTTGA AATAGTTAATACAGC SPH_1911 1777591 - 1776689 - | ABC transporter, permease protein SPH_1912 1778997 - 1777687 - | ABC transporter substrate-binding protein - sugar transport TERM 2133 1779013 - 1779024 + r 89 -3 -5.88476 | CATTTTCCTCCTTTT TGAA ACGT TTCA TTTTTTATTTATTTT SPH_1913 1780119 - 1779124 - | sugar-binding transcriptional regulator, LacI family protein TERM 2134 1780286 - 1780301 + r 79 -4.6 -5.27399 | opp_overlap 1780281 1780286 CATAAAACAGGAAAA GCCTTG GTTT CATGGC TTTTTTCGTATCTTC TERM 2135 1780441 - 1780401 - R 84 -6.4 -5.06414 | overlap 1780403 TTTTCTTAACAAAAA CACCCCAAAAATTAGA TTTTTTCTG TCTAACTTTTGAGGTA CAGTTCAAACGCGAA TERM 2136 1780439 - 1780403 - R 71 -6.8 -4.16307 | overlap 1780401 TTCTTAACAAAAACA CCCCAAAAATTAGA TTTTTTCTG TCTAACTTTTGAGG TACAGTTCAAACGCG SPH_1914 1781962 - 1780481 - | M protein trans-acting positive transcriptional regulator SPH_1916 1782653 - 1783219 + | hypothetical protein TERM 2137 1783208 - 1783198 - f 84 -5.4 -5.46706 | ACCTCAAAACAAAAA GACT GTT AGTC GTGTGAAGTAAGGAA SPH_1917 1783231 - 1783401 + | putative lipoprotein SPH_1918 1783440 - 1784048 + | Gls24 protein SPH_1919 1784079 - 1784282 + | hypothetical protein TERM 2138 1784359 - 1784388 + T 88 -7.3 -5.10154 | gap 1, opp_overlap 1784359 CTCAGAAAACAAAAA GCTAGAGATTCC CAATTGC GGAA-CTCTAGC TTTTTAATTTTGCCT TERM 2139 1784388 - 1784359 - T 93 -7.3 -5.54907 | gap 1, opp_overlap 1784359 CTCAGAAAACAAAAA GCTAGAGATTCC CAATTGC GGAA-CTCTAGC TTTTTAATTTTGCCT SPH_1920 1784631 - 1784392 - | hypothetical protein SPH_1921 1785214 - 1785095 - | hypothetical protein SPH_1922 1786185 - 1785415 - | hypothetical protein TERM 2140 1785787 - 1785803 + g 93 -8.1 -5.45726 | CATATAGAATCCTAT CTTATCA AAT TGATAAG TTTTTTTAAAATCTG SPH_1923 1787048 - 1786200 - | sulfatase-modifying factor 1 (C-alpha-formyglycine-generating enzyme 1) TERM 2141 1786856 - 1786841 - G 78 -4 -5.2015 | CGAACAATATAAAAA CAAAAG ACCA CTCTTG TCGCTCAGCTAGTGT SPH_1924 1788520 - 1787045 - | sulfatase SPH_1925 1790198 - 1788843 - | phosphotransferase system TERM 2142 1789147 - 1789169 + g 73 -7 -4.21462 | opp_overlap 1789146 1789145 ATATTAAACAGAACT GGTGCTAGAC CAA GTTTAGCAAC TTTTCGATAATGACT SPH_1926 1790525 - 1790208 - | lichenan-specific phosphotransferase enzyme IIA component SPH_1927 1790859 - 1790542 - | lichenan-specific phosphotransferase enzyme IIB component SPH_1928 1791770 - 1790874 - | hypothetical protein SPH_1929 1793035 - 1791773 - | lichenan permease IIC component TERM 2143 1792538 - 1792560 + g 83 -6.3 -5.08178 | gap 1, opp_overlap 1792537 AAAGCTTTTAGATAC TGCTGG-TGG AACA CCATCCGGCA TTTTTATCTGTATAT SPH_1930 1793315 - 1794493 + | ROK family protein, putative TERM 2144 1794590 - 1794546 - T 100 -11.5 -4.95758 | opp_overlap 1794546 AGTATATCATAAAAA GCGAACAAACCTGTTTTCTGA AAA TCAGAATTCTGTTTTGTTCGC TTTCTTTATATTTGG TERM 2145 1794546 - 1794590 + T 100 -11.5 -4.73432 | opp_overlap 1794546 AGTATATCATAAAAA GCGAACAAACCTGTTTTCTGA AAA TCAGAATTCTGTTTTGTTCGC TTTCTTTATATTTGG SPH_1931 1795167 - 1794721 - | acetyltransferase TERM 2146 1794771 - 1794789 + g 72 -4.6 -4.73388 | opp_overlap 1794768, overlap 1794748 1794768 1794788 GTGCTTCAACCATTT GAACGATT TCA AATCCTTC TTTTTGGTAAAGATT TERM 2147 1795832 - 1795821 - g 86 -4.4 -5.45802 | opp_overlap 1795821, overlap 1795822 CCTGCAAAAGAAAAA GGAA AGAC TTCC TTTCGTGCCTTTCCT SPH_1933 1795237 - 1795896 + | type 4 prepilin peptidase trpA 1796644 - 1795868 - | tryptophan synthase, alpha subunit TERM 2148 1795912 - 1795930 + g 91 -10.3 -4.55826 | TAAAGTCCTGAATCG GCTCTCC TTGGT GGAGAGC TTTTACTATTTTCGA trpB 1797860 - 1796637 - | tryptophan synthase, beta subunit TERM 2149 1797633 - 1797660 + g 81 -5.5 -5.1101 | opp_overlap 1797632, overlap 1797634 CCGTTTGAGATAAAT CTTGGCTCCGC CAATAT GCTGGGTCAAG TTTTTTGCGTAGTAA trpF 1798437 - 1797838 - | N-(5'phosphoribosyl)anthranilate isomerase TERM 2150 1798370 - 1798358 - G 74 -4.8 -4.78848 | GGTGCAAAGACAAAA CCGA TGTAG TCGG CTCCTGCTGAAACGG trpC 1799191 - 1798424 - | indole-3-glycerol phosphate synthase trpD 1800192 - 1799188 - | anthranilate phosphoribosyltransferase TERM 2151 1799701 - 1799676 - G 70 -8.5 -3.36968 | gap 1 CAGTCAAGTTCATAA TCGT-TGGAATT CCC AATTCCAAACGA GCTGGCATGATGTAT SPH_1938 1800769 - 1800203 - | para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II trpE 1802127 - 1800766 - | anthranilate synthase component I TERM 2152 1802206 - 1802179 - R 100 -12.8 -4.7373 | CGACTGTATGAAAAA TCCCCACGCAAA ATAA CTTGCGTGAGGA CGAAATTCGCGGTGC SPH_1940 1802750 - 1802499 - | chlorohydrolase TERM 2153 1802617 - 1802635 + g 71 -9.6 -2.87931 | overlap 1802600 1802596 1802620 TCAAAACAGTGTTTT GAGCTGAC TTC GTCAGTTC TATCTGCAACCTCAA TERM 2154 1802709 - 1802691 - G 72 -10.4 -2.61383 | overlap 1802690 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CAGCCTGCGGCTAGT TERM 2155 1802892 - 1802926 + r 71 -8.5 -3.14564 | opp_overlap 1802893 CGACGGATAGAAAAA AGCCCACACACAGAA TATAC TTCCGTGTGAGGGCG TTGGTAACGCGATGC TERM 2156 1802925 - 1802893 - R 100 -14.2 -5.38047 | opp_overlap 1802892 GACGGATAGAAAAAA GCCCACACACAGAA TATAC TTCCGTGTGAGGGC GTTGGTAACGCGATG TERM 2157 1802971 - 1802953 - R 78 -10.4 -2.73483 | opp_overlap 1802951 1802957, overlap 1802957 ATGCCACCTCAATTA TAAAGGGA CTA TCCCTTTA CATCTCTGCCTTGTT SPH_1941 1804359 - 1803358 - | catabolite control protein TERM 2158 1804586 - 1804570 - R 76 -3.7 -5.34555 | TCATATGAGAAAAAA CTACCAT AAA ATTGTAG ATTAACTTTTTCAGT TERM 2159 1804652 - 1804666 + r 80 -2.9 -5.63517 | TGTCAATTTAACATT TTAAC ATAGA GTTAA TTTTTTCTTTAAAGA SPH_1942 1804835 - 1804644 - | hypothetical protein TERM 2160 1804887 - 1804867 - R 74 -5.5 -4.69027 | AAATCTACTCAAAAA TTAGATGAT TAA AACATCTAA AAAACAAAAGGACAA TERM 2161 1804919 - 1804892 - R 100 -10 -5.19916 | opp_overlap 1804892, overlap 1804897 AAAACATCTAAAAAA CAAAAGGACAAA AACA TCTGTCCCTTTG TTTACTAAATTTCAG TERM 2162 1804914 - 1804897 - R 87 -6.3 -5.43553 | opp_overlap 1804892, overlap 1804892 ATCTAAAAAACAAAA GGACAAA AACA TCTGTCC CTTTGTTTACTAAAT SPH_1943 1805641 - 1804931 - | putative Mg2+ transporter-C (MgtC) family protein SPH_1944 1807335 - 1805644 - | binding-protein-dependent transport systems inner membrane component TERM 2163 1805934 - 1805924 - G 84 -6.8 -4.95758 | ATCATAGTATAAAAA GGTG AAG CACC CATACTTCTTGCTGC SPH_1945 1808357 - 1807347 - | spermidine/putrescine import ATP-binding protein PotA SPH_1946 1809527 - 1808460 - | ABC transporter, substrate-binding protein SPH_1947 1810211 - 1809552 - | hypothetical protein SPH_1948 1810452 - 1810339 - | hypothetical protein SPH_1949 1811251 - 1810955 - | hypothetical protein SPH_1950 1813361 - 1811235 - | cell wall surface anchor family protein TERM 2164 1813564 - 1813576 + r 71 -7.7 -3.54951 | overlap 1813550 CCTAAGTCTAGGTTA CTGAC TTG GTCAG TTCTATAGTAGACTG TERM 2165 1814001 - 1813985 - R 75 -5.1 -4.8543 | TAACCTCGATAAAAA TAGATGC AGT GCTTCTA AAATACTGGAATAGG SPH_1951 1814240 - 1814115 - | hypothetical protein TERM 2166 1814253 - 1814214 - G 100 -14.5 -6.09196 | opp_overlap 1814214 CTGAAAACAAAAAAA GACGCGAGTTTCCACAA TCTCAC TCATGGAAACTCACGTC TTTCAAAAAATAGGG TERM 2167 1814422 - 1814401 - R 70 -3.7 -4.90296 | overlap 1814402 1814403 AAAATCCTATAAAAA TTCTCTCTC TGAG GAGAAAGAG GCCTCAACTACAGGT SPH_1952 1815750 - 1814524 - | Cps7G TERM 2168 1814890 - 1814876 - G 71 -6.4 -4.1585 | CGAGAACCTGCAAAA CCACTA TCA TAGCGG TCCACAATGTCCTTA SPH_1953 1816485 - 1815793 - | sugar transferase family protein TERM 2169 1816180 - 1816197 + g 78 -4.1 -5.252 | overlap 1816181 GCGGCTATCGTTAGC AGAAGTC ACCA GACTTCC TTTTTTATCCGCATC SPH_1954 1818409 - 1816658 - | ABC transporter, ATP-binding protein TERM 2170 1816853 - 1816878 + g 77 -9.9 -3.57971 | gap 1, opp_overlap 1816860, overlap 1816860 CTGTCTCATCTTCGC CAGAGAAGCTTG AAC CAAGCTT-TCTG TTTCAGAGTCAATAT TERM 2171 1816860 - 1816872 + g 80 -7.7 -4.33258 | opp_overlap 1816860, overlap 1816853 ATCTTCGCCAGAGAA GCTTG AAC CAAGC TTTCTGTTTCAGAGT TERM 2172 1817069 - 1817057 - G 79 -9.1 -3.92075 | overlap 1817044 ATCTGCATCCACAAA GGCTG CCG CAGCC TGAACCTGCTCATCA SPH_1955 1820144 - 1818399 - | ABC transporter, ATP-binding protein TERM 2173 1820230 - 1820250 + r 72 -8.3 -3.35996 | overlap 1820223 1820231 AACTAGCCGCAGGCT GCTCAAAGC ACT GCTTTGAGG TTGTAGATAGAACTG TERM 2174 1820231 - 1820249 + r 84 -11.8 -2.61383 | overlap 1820223 1820230 ACTAGCCGCAGGCTG CTCAAAGC ACT GCTTTGAG GTTGTAGATAGAACT TERM 2175 1820275 - 1820263 - R 71 -7.7 -3.58905 | AGGTTGTAGATAGAA CTGAC GAA GTCAG TAACCTACATACGGC SPH_1956 1820802 - 1820350 - | hypothetical protein TERM 2176 1821638 - 1821650 + G 73 -7.7 -3.85698 | opp_overlap 1821645 CGTAAAGGCTATGCT GGAAC CAT GTTCC TTTATAAAAAAGAAC TERM 2177 1821885 - 1821869 - g 89 -5.8 -5.42975 | CTAGACAAAGAAAAA CCAGTC CTTGC GACCGG TGACTACAACGTAGC xth 1821389 - 1822216 + | exodeoxyribonuclease III TERM 2178 1822654 - 1822691 + F 93 -9.3 -4.46212 | opp_overlap 1822654 TTAAAGTTAGAAAAA GGCATATTGTCAGGTGT TTAA AAACTTGATAGTATGCC TTTTATGATGGAAAA TERM 2179 1822780 - 1822837 + F 100 -14.5 -4.05229 | gap 1, opp_overlap 1822774 1822799, overlap 1822775 1822788 1822789 TATATGATACTGACT CTGTCAATTCTATCCACAACCTCAAAAC AGT GTTTTGAGGTTGTGGATAGC-TTCCTAG TTTGCTCTTTGATTT TERM 2180 1822788 - 1822830 + F 100 -23.8 -3.34629 | opp_overlap 1822799, overlap 1822780 1822789 ACTGACTCTGTCAAT TCTATCCACAACCTCAAAAC AGT GTTTTGAGGTTGTGGATAGC TTCCTAGTTTGCTCT TERM 2181 1822789 - 1822829 + F 100 -27.3 -2.60054 | opp_overlap 1822799, overlap 1822788 1822780 CTGACTCTGTCAATT CTATCCACAACCTCAAAAC AGT GTTTTGAGGTTGTGGATAG CTTCCTAGTTTGCTC TERM 2182 1822819 - 1822799 - f 93 -12.7 -3.36803 | opp_overlap 1822789 1822788 1822780 CAATTCTATCCACAA CCTCAAAAC AGT GTTTTGAGG TTGTGGATAGCTTCC TERM 2183 1823123 - 1823147 + F 95 -8.7 -5.19916 | CATGCCTATTTGGGG GACTTACTTAG AGA TTAAGTAGGTC TTTTTTGAATATTTT TERM 2184 1823288 - 1823302 + F 78 -7.2 -4.34402 | opp_overlap 1823288 AGGCTTAGGCTAAAA TAGTTC CCC GAACTA TTTTACTCTCAAAAA TERM 2185 1823302 - 1823288 - f 75 -7.2 -4.13945 | opp_overlap 1823288 AGGCTTAGGCTAAAA TAGTTC CCC GAACTA TTTTACTCTCAAAAA xpt 1823492 - 1824073 + | xanthine phosphoribosyltransferase SPH_1963 1824073 - 1825335 + | xanthine permease TERM 2186 1825355 - 1825342 - T 79 -3.8 -5.44198 | opp_overlap 1825342, overlap 1825336 AAGAAATAAGAAAAA GAGG TGCGAG CCTC TTTTTTGTTTATCAC TERM 2187 1825342 - 1825355 + T 85 -4.5 -5.72622 | opp_overlap 1825342 1825336 AAGAAATAAGAAAAA GAGGT GCGA GCCTC TTTTTTGTTTATCAC SPH_1964 1826288 - 1825422 - | type II restriction enzyme DpnII SPH_1965 1827045 - 1826275 - | DNA methylase TERM 2188 1826838 - 1826855 + g 78 -7.1 -4.39426 | GATTAAACTCATGTT TTTCTTC GAAT GAAGAAA TTTTATCCCAATCTC SPH_1966 1827925 - 1827071 - | modification methylase DpnIIA TERM 2189 1828068 - 1828026 - R 72 -2.8 -5.28683 | overlap 1828027 ATCAATATCAAAAAA TGAGTAAGGCAAATCTTATA AAT TCCAAAATTCACCTCACTCT ATTAAATTACTCTTT SPH_1967 1828486 - 1828082 - | thioesterase family protein galT 1830037 - 1828556 - | galactose-1-phosphate uridylyltransferase TERM 2190 1828673 - 1828693 + g 86 -4.7 -5.38958 | opp_overlap 1828673 GATAGCCCCCACAGA GTCCTTG ACGATTG CAAGGGC TTTTTCTTTATCCGT TERM 2191 1829470 - 1829460 - G 73 -6.8 -4.17023 | opp_overlap 1829459, overlap 1829449 CCAACCATTTCAAAA CGGA TAA TCCG GTGGTTGGTGCGAGC galK 1831234 - 1830056 - | galactokinase TERM 2192 1831685 - 1831667 - g 82 -3.8 -5.49569 | overlap 1831669 TAGGAATAGAAAAAA GAGCCCAA GAG TTGGACTA CGATATCTTGCGCTA TERM 2193 1831683 - 1831669 - g 74 -6.4 -4.36863 | overlap 1831667 GGAATAGAAAAAAGA GCCCAA GAG TTGGAC TACGATATCTTGCGC SPH_1970 1831399 - 1832406 + | GalR TERM 2194 1832421 - 1832447 + T 93 -7.5 -5.5074 | gap 1, opp_overlap 1832421 GGATAACATAAAAAA CGAATA-GAGTT CTAA AACTCCTATTCG TTTTTTATTCGATTA TERM 2195 1832447 - 1832421 - T 93 -7.5 -5.5208 | gap 1, opp_overlap 1832421 GGATAACATAAAAAA CGAATA-GAGTT CTAA AACTCCTATTCG TTTTTTATTCGATTA SPH_1971 1833489 - 1832452 - | alcohol dehydrogenase, zinc-containing SPH_1972 1833843 - 1833490 - | MerR family transcriptional regulator SPH_1973 1834977 - 1834087 - | cation diffusion facilitator transporter - heavy metal transport SPH_1974 1835110 - 1835646 + | TetR family transcriptional regulator TERM 2196 1835736 - 1835709 - T 71 -7.8 -3.62046 | opp_overlap 1835714, overlap 1835714 TTATCTTTTCAACAA CAAAAGAGGACC CGCC GATCCTCTTTTT CATACTATAAATCCT TERM 2197 1835714 - 1835731 + T 74 -5.5 -4.79223 | opp_overlap 1835709 1835714 TTTTCAACAACAAAA GAGGACC CGCC GATCCTC TTTTTCATACTATAA TERM 2198 1835731 - 1835714 - T 88 -7.7 -4.89477 | opp_overlap 1835714, overlap 1835709 TTTTCAACAACAAAA GAGGACC CGCC GATCCTC TTTTTCATACTATAA SPH_1975 1836619 - 1835813 - | nicotinamide mononucleotide transporter SPH_1976 1836906 - 1836790 - | hypothetical protein TERM 2199 1836904 - 1836883 - G 91 -8 -5.21709 | opp_overlap 1836882 1836883 TCTCACATCAAAAAA GCCCAGAC GAAATT GTCTGAGC ATTCTTTTATCTAGT SPH_1977 1838484 - 1836964 - | choline transporter SPH_1978 1839205 - 1838477 - | choline transport ATP-binding protein opuBA TERM 2200 1839172 - 1839188 + g 86 -7.3 -5.10767 | overlap 1839185 AGACATCCTTTTCTG TGTAGCG CAG TGCTACA TTTTTGTATTCAATC SPH_1979 1839984 - 1839220 - | hypothetical protein SPH_1980 1840431 - 1839988 - | MarR family transcriptional regulator TERM 2201 1841088 - 1841115 + r 100 -10.8 -4.11751 | gap 1, opp_overlap 1841088 AGGTCTTATAAAAAA TGCTTTGA-TCCA CAA TGGAATCAAAGCA TTTTAAAAAGTTCCT TERM 2202 1841115 - 1841088 - R 100 -10.8 -5.24531 | gap 1, opp_overlap 1841088 AGGTCTTATAAAAAA TGCTTTGA-TCCA CAA TGGAATCAAAGCA TTTTAAAAAGTTCCT SPH_1981 1841404 - 1841108 - | hypothetical protein pepA 1842490 - 1841426 - | glutamyl aminopeptidase SPH_1983 1842610 - 1842732 + | hypothetical protein TERM 2203 1843734 - 1843723 - f 74 -2.2 -5.40004 | TACTAAATTAAAAAA TCCC ACAC GAGA TTGTTGCTCGACGTG TERM 2204 1844694 - 1844720 + G 72 -10.2 -2.73681 | AACTGGCCCTCTTTC TGGTGGCGCT AACGACA AGCGTCACCA TGATTACCGTGGGTG SPH_1985 1844015 - 1844974 + | ABC transporter membrane-spanning permease - ferric iron transport SPH_1986 1844964 - 1845920 + | ABC transporter membrane-spanning permease - ferric iron transport TERM 2205 1846274 - 1846260 - g 74 -4.2 -5.04987 | overlap 1846249 AAGACTGGGAAAAAA TCCGAG AAA CTCTGA ACTATTTGGAACTGA SPH_1987 1845917 - 1846669 + | ferrichrome transport ATP-binding protein FhuC TERM 2206 1847404 - 1847387 - g 82 -6.3 -4.93547 | gap 1, opp_overlap 1847395 TTAATGAAGGAAAAA TGGCAGCC TTT GG-TGCCA AATCTCGTTTCTCTT SPH_1988 1846765 - 1847730 + | iron-compound ABC transporter, iron-compound-binding protein TERM 2207 1847885 - 1847922 + T 100 -15.8 -5.09245 | opp_overlap 1847885 TTTGACATTCTAAAA CGCATCCTATCAAGTT CACTCA AACCTGATAGGATGCG TTTTTATCATTTTGA TERM 2208 1847922 - 1847885 - T 100 -18.7 -4.16943 | opp_overlap 1847885 TTTGACATTCTAAAA CGCATCCTATCAAGTTC ACTC AAACCTGATAGGATGCG TTTTTATCATTTTGA SPH_1989 1848197 - 1847955 - | hypothetical protein TERM 2209 1848179 - 1848168 - G 73 -7.2 -4.10855 | opp_overlap 1848168 AAAACGTTGGTAAAA GCGC ACAG GCGC TATTAAAATTCGTTT rluB 1848919 - 1848197 - | ribosomal large subunit pseudouridine synthase B scpB 1849475 - 1848906 - | segregation and condensation protein B SPH_1992 1850222 - 1849494 - | ScpA/B protein SPH_1993 1850962 - 1850222 - | tyrosine recombinase SPH_1994 1851414 - 1850953 - | CBS domain-containing protein SPH_1995 1851932 - 1851411 - | phosphodiesterase SPH_1996 1852879 - 1851908 - | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family protein murI 1853670 - 1852876 - | glutamate racemase TERM 2210 1852990 - 1852967 - G 71 -5.2 -4.56597 | GCTGTTGTGTAAAAA CGGTGATGGA GTGG TCCAGCATCG CGACCACGATTGATT TERM 2211 1853836 - 1853875 + r 80 -5.1 -5.29208 | opp_overlap 1853845, overlap 1853840 AAACCATAACCAACA TAGTGAGAAGTCTGGAA CTTTCA TCCCAGACTTTTCCTTA TTTATTTTTTCTTTT TERM 2212 1853840 - 1853871 + r 70 -8.1 -3.33489 | opp_overlap 1853845, overlap 1853836 CATAACCAACATAGT GAGAAGTCTGGAA CTTTCA TCCCAGACTTTTC CTTATTTATTTTTTC SPH_1998 1854125 - 1853877 - | hypothetical protein TERM 2213 1854192 - 1854168 - R 75 -10.1 -2.66316 | opp_overlap 1854168, overlap 1854172 CCTTTCATTATACCA CAAACTAGCCA CCC TGACCAGTTTG TTCTACACTTTCAGG treC 1856006 - 1854381 - | alpha,alpha-phosphotrehalase TERM 2214 1855001 - 1855014 + g 73 -6.7 -4.2349 | CTAGCATGGTGGCTC CTTCC TTGC GGAAG TTTTGAATATCGACA TERM 2215 1856052 - 1856030 - R 89 -8.5 -4.36914 | gap 1, opp_overlap 1856007 1856028 1856030 CCTTTTCTGATAAAA GGGA-GGAAG CAGT CTTCCGTCCC TATTTGTGCTATTTC TERM 2216 1856030 - 1856052 + r 77 -8.5 -3.63897 | gap 1, opp_overlap 1856030, overlap 1856007 1856028 CCTTTTCTGATAAAA GGGA-GGAAG CAGT CTTCCGTCCC TATTTGTGCTATTTC treP 1858151 - 1856184 - | pts system, trehalose-specific IIBC component TERM 2217 1858077 - 1858092 + g 70 -3.2 -4.90778 | overlap 1858078 CCGTGTCGCACAGTG GGTGAC GGCA GTCACA TTTTCTTTGCCTCCA TERM 2218 1858163 - 1858198 + H 79 -10 -3.30124 | overlap 1858167 1858171 CCATTTGATTCTCCT TATACTTGTCAAAGCA AGTT TGATTTGATAAGTATA TTGTAAACGATACCA treR 1858336 - 1859046 + | trehalose operon repressor TERM 2219 1859076 - 1859044 - T 74 -6.4 -4.32607 | opp_overlap 1859049 1859051, overlap 1859049 GCAAAACGCAAGAAA TAAAAGACTGAGAC ACCAG ATCTCAGCCTTTTT CGGCTCTATAATATT TERM 2220 1859071 - 1859049 - T 84 -6.3 -5.10665 | opp_overlap 1859049 1859051, overlap 1859044 ACGCAAGAAATAAAA GACTGAGAC ACCAG ATCTCAGCC TTTTTCGGCTCTATA TERM 2221 1859076 - 1859129 + T 100 -14.1 -4.52589 | overlap 1859078 AGATCTCAGCCTTTT TCGGCTCTATAATATTTGTAGTGGG TAAC CCCCCTATGGATATTATGGAGCCTA TTTTGTGTAGAAAAA TERM 2222 1859078 - 1859127 + T 100 -16.7 -3.87627 | overlap 1859076 ATCTCAGCCTTTTTC GGCTCTATAATATTTGTAGTGGG TAAC CCCCCTATGGATATTATGGAGCC TATTTTGTGTAGAAA TERM 2223 1859920 - 1859934 + T 77 -8.6 -3.6502 | opp_overlap 1859920 AGGCTCAGGCTGAAA CAGTCT CCT AGACTG TTTCACTCCCGAATG TERM 2224 1859934 - 1859920 - T 77 -8.6 -3.57263 | opp_overlap 1859920 AGGCTCAGGCTGAAA CAGTCT CCT AGACTG TTTCACTCCCGAATG TERM 2225 1860517 - 1860495 - T 100 -9.2 -5.27779 | opp_overlap 1860499 TTGAACATCAAAAAA GAAAGGACGA AAT TTGTCCTTTC TCGAGCTTAGCTGAC SPH_2005 1861528 - 1860602 - | oligopeptide transport ATP-binding protein AmiF TERM 2226 1861408 - 1861430 + g 70 -9.2 -3.14881 | opp_overlap 1861411, overlap 1861411 TACCGGACTCACCTA CAAGCGAGAA AGT TTCTCCCTTG TTGATAAAGAAGTTA TERM 2227 1861474 - 1861490 + g 72 -9.5 -2.99251 | overlap 1861473 CGACAAACTTCTTAC TTCCTTC ACC GAAGGAA ATTTCTAAATCTTTG TERM 2228 1861552 - 1861564 + r 77 -4.8 -5.02476 | TCCTAGTCAGCCAGA TGGG CAAAT CCCA TTTTTTCACGGATCT SPH_2006 1862606 - 1861539 - | oligopeptide transport ATP-binding protein OppD SPH_2007 1863541 - 1862615 - | oligopeptide transport system permease protein AmiD SPH_2008 1865037 - 1863541 - | oligopeptide transport system permease protein AmiC TERM 2229 1865098 - 1865055 - R 84 -8.4 -4.57073 | gap 1, opp_overlap 1865063 1865066 1865088, overlap 1865057 1865063 TATTTCCTTTAAAAA TCCCAAAAGAACCTTCTCCTC ATG GAG-AGAAAGTTCTATTAGAA ATTATTTACTTCACA TERM 2230 1865090 - 1865063 - R 89 -8.6 -4.31329 | gap 1, opp_overlap 1865063 1865066 1865088, overlap 1865057 1865055 TTAAAAATCCCAAAA GAACCTTCTCCTC ATG GAG-AGAAAGTTC TATTAGAAATTATTT SPH_2009 1866942 - 1865104 - | AmiA protein TERM 2231 1865318 - 1865304 - G 73 -10 -2.9162 | CAATTCGTGAAAGCA CTGGTG CTG CACCAG AAGAAGCCATAGCAG TERM 2232 1867733 - 1867753 + r 73 -8.3 -3.62591 | opp_overlap 1867733 CATCGTATAAAAAAA TCTCCTACC CAA GGTAGAAGA TTTCAAACTTATAAA TERM 2233 1867753 - 1867733 - R 100 -10.5 -5.626 | opp_overlap 1867733 CATCGTATAAAAAAA TCTCCTACC CAA GGTAGAAGA TTTCAAACTTATAAA SPH_2010 1868964 - 1867771 - | O-antigen polymerase family protein TERM 2234 1868791 - 1868769 - G 79 -4.8 -5.12068 | overlap 1868763 1868772 1868775 TATAGCTAAGAAAAA GAAGCAGCAT CGG ATGCTCCCCC ATTTTCTGAAGAATA TERM 2235 1868788 - 1868772 - G 71 -5.1 -4.64495 | overlap 1868769 1868763 1868775 AGCTAAGAAAAAGAA GCAGCAT CGG ATGCTCC CCCATTTTCTGAAGA TERM 2236 1869064 - 1869052 - R 80 -6.3 -4.68655 | CAATTTGAAAACAAA GGAAA CGT TTTCC AAAATAAAAACCCTA SPH_2011 1870544 - 1869102 - | sucrose phosphorylase (sucrose glucosyltransferase)(glucosyltransferase-A) (GTF-A) SPH_2012 1871688 - 1870855 - | sugar ABC transporter, permease protein SPH_2013 1872568 - 1871702 - | sugar ABC transporter, permease protein SPH_2014 1873841 - 1872582 - | sugar ABC transporter, sugar-binding protein TERM 2237 1873926 - 1873881 - R 100 -15.9 -3.74251 | gap 1, opp_overlap 1873877 1873894, overlap 1873894 TACACCCTTATCAAA CTGCACCTCAAAAGTTAGAT AGAATAA ATCTAACTTTTGAGGT-CAG TACATATCATAGTTT SPH_2015 1876095 - 1873933 - | alpha-galactosidase AgaN SPH_2016 1876203 - 1877063 + | msm operon regulatory protein TERM 2238 1877742 - 1877717 - g 90 -4.8 -5.54338 | gap 1, opp_overlap 1877714 1877717, overlap 1877735 GAATTAAAAGAAAAA GCTGGCAGCTT ATTTA AAGCTA-CAGC TCCTATAACAAGGAA SPH_2017 1877060 - 1877995 + | biotin-[acetyl-CoA-carboxylase] ligase TERM 2239 1878113 - 1878097 - f 100 -9.5 -5.93252 | opp_overlap 1878099 TCTAAAAACAAAAAA GAGAGTT ACA AACTCTC ATTAAAACGGGCTCT TERM 2240 1878123 - 1878172 + F 75 -8.1 -3.87627 | overlap 1878121 ACTCTCATTAAAACG GGCTCTATAATATTTGTAGTG TGTAAATC CCCTATGGATATTATGGAGCC TATTTTGTGTAGAAA TERM 2241 1879503 - 1879481 - f 100 -13.6 -5.27779 | opp_overlap 1879485 TTGAACATCAAAAAA GAAAGGACAA AAT TTGTCCTTTC TCGAGCTTAGCTTTT TERM 2242 1879485 - 1879499 + F 79 -8.6 -3.89614 | opp_overlap 1879481 ACATCAAAAAAGAAA GGACAA AAT TTGTCC TTTCTCGAGCTTAGC TERM 2243 1879639 - 1879623 - f 100 -9.5 -5.93252 | opp_overlap 1879625 TCTAAAAATAAAAAA GAGAGTT ACA AACTCTC ATTAAAACGGAGAAT TERM 2244 1880662 - 1880682 + F 79 -9.7 -3.31263 | overlap 1880664 ATTCGAACCCGCGAC CCCCACCTT GGC AAGGTGGTG TTCTACCACTGAACT TERM 2245 1880664 - 1880680 + F 86 -10.9 -3.22475 | overlap 1880662 TCGAACCCGCGACCC CCACCTT GGC AAGGTGG TGTTCTACCACTGAA TERM 2246 1883961 - 1883980 + F 91 -12.2 -3.62096 | opp_overlap 1883960 1883959 TGCAGTCCTACAACC CCGAAGAG TAAA CTCTTCGG TTTGCCCTCCTGCCG TERM 2247 1885030 - 1885015 - f 76 -7.6 -3.90112 | CTGTCCCGAAGGAAA GCTCTA TCTC TAGAGC GGTCAGAGGGATGTC TERM 2248 1886063 - 1886077 + F 95 -8.6 -4.89605 | GAGTTCTCACTCATT TCTGTC ACT GACAGA TTTATTGTTTTTTTC SPH_2044 1887828 - 1888604 + | RecA regulator RecX TERM 2249 1889053 - 1889041 - g 71 -4.8 -4.61633 | ACAGATGGGGAAAAA CGTC TCTTG GACG TTGAAGAGTACGAGC SPH_2045 1888693 - 1889226 + | hypothetical protein TERM 2250 1889258 - 1889237 - T 86 -10.2 -3.5936 | opp_overlap 1889237 GGTAAAGTTGTCAAA GGTCAGGA ACAAAA TCCTGACC TTTTTTTGGTAGTAT TERM 2251 1889237 - 1889258 + T 100 -10.2 -5.56568 | opp_overlap 1889237 GGTAAAGTTGTCAAA GGTCAGGA ACAAAA TCCTGACC TTTTTTTGGTAGTAT TERM 2252 1889295 - 1889282 - T 74 -5.3 -4.80453 | GTAGTATAAAATAAA TTGTG TAAA CACAA AAAGGAATAAATCTA SPH_2046 1889787 - 1889581 - | hypothetical protein TERM 2253 1889822 - 1889875 + r 100 -14.1 -4.52589 | overlap 1889824 ATTAGATGTGAATTT TCGGCTCTATAATATTTGTAGTGGG TAAC CCCCCTATGGATATTATGGAGCCTA TTTTGTGTAGAAAAA TERM 2254 1889824 - 1889873 + r 100 -16.7 -3.87627 | overlap 1889822 TAGATGTGAATTTTC GGCTCTATAATATTTGTAGTGGG TAAC CCCCCTATGGATATTATGGAGCC TATTTTGTGTAGAAA TERM 2255 1890666 - 1890680 + r 77 -8.6 -3.6502 | opp_overlap 1890666 AGGCTCAGGCTGAAA CAGTCT CCT AGACTG TTTCACTCCCGAATG TERM 2256 1890680 - 1890666 - R 77 -8.6 -3.57263 | opp_overlap 1890666 AGGCTCAGGCTGAAA CAGTCT CCT AGACTG TTTCACTCCCGAATG TERM 2257 1891254 - 1891232 - R 100 -13.6 -5.27779 | opp_overlap 1891236 TTGAACATCAAAAAA GAAAGGACAA AAT TTGTCCTTTC TCGAGCTTAGCTGAC TERM 2258 1891236 - 1891250 + r 79 -8.6 -3.89614 | opp_overlap 1891232 ACATCAAAAAAGAAA GGACAA AAT TTGTCC TTTCTCGAGCTTAGC groL 1892985 - 1891363 - | chaperonin GroL TERM 2259 1892461 - 1892478 + g 70 -7.7 -3.61889 | overlap 1892461 1892463 ACCACGTGACTCTTC GATGGTG ATGA CACCGTC TTTGCCAACTTTTTC groS 1893285 - 1893001 - | chaperonin GroS TERM 2260 1893406 - 1893436 + r 75 -9.9 -2.7439 | opp_overlap 1893406 1893412, overlap 1893405 1893412 CTGACTTTCTCAAGA TAAAAAGCCTGAG ACCAA CTCAGACTTTTTA ATGTTTATACTCAAT TERM 2261 1893436 - 1893406 - R 85 -12.1 -3.02511 | opp_overlap 1893406 1893405 1893412, overlap 1893412 CTGACTTTCTCAAGA TAAAAAGCCTGAG ACCAA CTCAGACTTTTTA ATGTTTATACTCAAT TERM 2262 1893412 - 1893430 + r 73 -4.5 -4.96106 | opp_overlap 1893406 1893412, overlap 1893406 1893405 TTCTCAAGATAAAAA GCCTGAG ACCAA CTCAGAC TTTTTAATGTTTATA TERM 2263 1893430 - 1893412 - R 84 -6.7 -5.0916 | opp_overlap 1893412 1893406 1893405, overlap 1893406 TTCTCAAGATAAAAA GCCTGAG ACCAA CTCAGAC TTTTTAATGTTTATA TERM 2264 1893490 - 1893510 + r 72 -8.3 -3.35996 | opp_overlap 1893476, overlap 1893489 1893491 AGCTAGCCGCAGGCT GCTCAAAGC ATT GCTTTGAGG TTGTGGATAAAGCTA TERM 2265 1893491 - 1893509 + r 84 -11.8 -2.61383 | overlap 1893489 1893490 GCTAGCCGCAGGCTG CTCAAAGC ATT GCTTTGAG GTTGTGGATAAAGCT SPH_2052 1893950 - 1893555 - | single-strand binding protein family TERM 2266 1894010 - 1893993 - R 82 -4.2 -5.40004 | opp_overlap 1893993 TAGGAAATCAAAAAA GTTACA GAAATT TGTAAC TTTTCGAGGAAATTT TERM 2267 1894012 - 1894022 + r 70 -4 -4.86216 | CAGAAATTTGTAACT TTTC GAG GAAA TTTCTTATTTTTTAT SPH_2053 1894788 - 1894027 - | short chain dehydrogenase/reductase family oxidoreductase SPH_2054 1895450 - 1894821 - | hypothetical protein SPH_2055 1895783 - 1895466 - | thioredoxin family protein SPH_2056 1896079 - 1895780 - | hypothetical protein TERM 2268 1896159 - 1896137 - R 88 -7 -4.97312 | opp_overlap 1896137 1896143, overlap 1896138 AAAAGCAAGTAAAAA GCCTCTTCCT TTA AGGAAAAGGA CTTCTTATACTAAGA TERM 2269 1896158 - 1896138 - R 86 -10.5 -3.55947 | opp_overlap 1896137 1896143, overlap 1896137 AAAGCAAGTAAAAAG CCTCTTCCT TTA AGGAAAAGG ACTTCTTATACTAAG TERM 2270 1896201 - 1896221 + r 72 -8.3 -3.35996 | opp_overlap 1896187, overlap 1896194 1896202 AGCTAGCCGCAGGCT GCTCAAAGC ACT GCTTTGAGG TTGTAGATAGAACTG TERM 2271 1896202 - 1896220 + r 84 -11.8 -2.61383 | overlap 1896194 1896201 GCTAGCCGCAGGCTG CTCAAAGC ACT GCTTTGAG GTTGTAGATAGAACT TERM 2272 1896249 - 1896231 - R 76 -9.6 -2.87931 | opp_overlap 1896246 1896247, overlap 1896234 1896246 TTGAGGTTGTAGATA GAACTGAC GAA GTCAGCTC AAAACACTGTTTTGA TERM 2273 1896246 - 1896234 - R 71 -7.7 -3.58905 | overlap 1896231 AGGTTGTAGATAGAA CTGAC GAA GTCAG CTCAAAACACTGTTT TERM 2274 1896247 - 1896265 + r 78 -10.4 -2.61383 | opp_overlap 1896231 1896246, overlap 1896246 AACTGACGAAGTCAG CTCAAAAC ACT GTTTTGAG GTTGTGGATGAAGCT SPH_2057 1897435 - 1896761 - | hypothetical protein SPH_2058 1897887 - 1897441 - | response regulator SPH_2059 1898504 - 1898001 - | PAP2 family protein TERM 2275 1898315 - 1898305 - G 76 -6.8 -4.43859 | GACAAGGCCACAAAA CCTG ATG CAGG AATAAGCACATAAAC SPH_2060 1898863 - 1898501 - | hypothetical protein TERM 2276 1898921 - 1898904 - R 93 -7.7 -5.42164 | opp_overlap 1898899 1898904 TATAAATAAGAAAAA GAAGGCC GTCA AGCCTTC TTTTGATTTATTCTT TERM 2277 1898904 - 1898921 + r 83 -7 -4.71708 | opp_overlap 1898904, overlap 1898899 TATAAATAAGAAAAA GAAGGC CGTCAA GCCTTC TTTTGATTTATTCTT SPH_2063 1901275 - 1900805 - | MarR family transcriptional regulator TERM 2278 1901116 - 1901132 + g 85 -7.3 -4.8543 | opp_overlap 1901120 1901122, overlap 1901117 GCTCGATATCTTTAA TCAAGAC CAA GTCTTGG TTTTTCTCGCGATTA TERM 2279 1901117 - 1901131 + g 72 -8.6 -3.50535 | opp_overlap 1901120 1901122, overlap 1901116 CTCGATATCTTTAAT CAAGAC CAA GTCTTG GTTTTTCTCGCGATT TERM 2280 1901379 - 1901355 - R 100 -9.4 -5.52384 | opp_overlap 1901355 TCTTGATTAAAAAAA TCCCAAGTGA TTTTC TCACTTAGGA TCATGTTCTATAGGT SPH_2064 1902115 - 1901399 - | hypothetical protein TERM 2281 1902852 - 1902814 - R 78 -7.5 -4.20834 | overlap 1902809 TCTAAAACAAGTAAA GGATAATCAATCCCCTG TATAT CAAGGAATTGGCTACCC TTTTTACTTTTTTAC SPH_2065 1904411 - 1902996 - | pneumolysin (Thiol-activated cytolysin) SPH_2066 1904754 - 1904422 - | hypothetical protein SPH_2067 1905433 - 1904825 - | hypothetical protein TERM 2282 1905115 - 1905100 - G 93 -9 -5.2197 | opp_overlap 1905113 GATAAAAATCAAAAA CAGGAG CTAA CTCCTG CCAATCTGATTGGCT TERM 2283 1906156 - 1906129 - g 75 -5.6 -4.72986 | TAGCTGGATTAAAAA CAGCTTATCAAA AAAG TCGGACAAGCTG GTAAAATCTTGGCTG SPH_2069 1906029 - 1906160 + | mobile genetic element TERM 2284 1906370 - 1906328 - g 85 -7.2 -4.98531 | overlap 1906322 1906362 TTGCCAAAGTAAAAA CGTTTAAAATGTTTTCAACA ACC TATCGAAATCATCGTAAACG CTTCGGATTACGAAT SPH_2070 1906165 - 1906428 + | mobile genetic element TERM 2285 1906480 - 1906509 + F 90 -10.9 -3.72051 | opp_overlap 1906479 1906474 1906482 AAAAAGAGATGATAT TAGGGAGAACT GATTTAAA AGTTCTCCCTA TTTAACATTATTAAA TERM 2286 1906507 - 1906482 - f 72 -9.1 -2.70522 | opp_overlap 1906480, overlap 1906479 1906474 AAAGAGATGATATTA GGGAGAACT GATTTAAA AGTTCTCCC TATTTAACATTATTA TERM 2287 1906960 - 1906937 - g 95 -6 -5.52986 | overlap 1906948 1906958 ATGCTATGAAAAAAA CGGTATACTA ATTG CAGCACACCG TGGTACAAACGGAGG SPH_2071 1906905 - 1907738 + | hypothetical protein TERM 2288 1908534 - 1908548 + G 72 -8.6 -3.50332 | AATTCCAAGTAATGT CACCAA AAG TTGGTG TTCCTTATGTAACTG SPH_2072 1907765 - 1908826 + | ABC transporter, substrate-binding protein SPH_2073 1908843 - 1909847 + | spermidine/putrescine ABC transporter ATP-binding subunit SPH_2074 1909859 - 1911553 + | binding-protein-dependent transport systems inner membrane component TERM 2289 1911847 - 1911834 - g 71 -3.9 -4.93547 | GTAACTAATCAAAAA GTTAA AGGT TTAAC AACAGCAGCTGGATT SPH_2075 1911555 - 1912256 + | MgtC/SapB transporter TERM 2290 1912249 - 1912272 + F 77 -3.2 -5.51046 | overlap 1912242 1912240 1912238 TTTATGTTGAAGAGA TTAGGTAAGG GTGA CTTTGTCTAA TTTTTTCTATATTTC TERM 2291 1912368 - 1912358 - g 85 -2.6 -5.80003 | GGAATAAAGAAAAAA TTTT ATC AAAA ATCTGTAAGAATGAT SPH_2076 1912303 - 1912902 + | hydrolase SPH_2077 1912912 - 1914939 + | transcriptional regulator, LacI family protein TERM 2292 1915844 - 1915802 - g 73 -7.2 -4.13654 | overlap 1915811 1915836 TTGCCAAAGTAGAAA CGTTTAAAATGTTTTCAACA ACC TATCGAAATCATCGTAAACG CTTTGGATTACGAAT SPH_2079 1915513 - 1915902 + | IS4 family transposase TERM 2293 1916450 - 1916429 - T 74 -3 -5.23316 | overlap 1916430 TACTATACTAAAAAA CCACCTGA AACAAA TCAAGTGA CTAGAGGATAAAAAC TERM 2294 1916538 - 1916500 - T 93 -7.7 -5.46698 | gap 1 TTGAAAAGCAAAAAA CGCATAATATC-AGGTCT TGAA AAACCTTGATACTATACG TTTGATTGTGGGAAG TERM 2295 1916559 - 1916582 + T 87 -6.8 -5.42265 | overlap 1916550 TTGTGGGAAGATTGA CTTCATTTTC TCCT GAAATTGAAG TTTTTTCTAGTTTCC SPH_2080 1916900 - 1916640 - | hypothetical protein TERM 2296 1916981 - 1916999 + r 78 -10.4 -2.61264 | overlap 1916980 GCTAGCTGCAGGCTG CTCAAAAC ACT GTTTTGAG GTTGTAGATGGAAGC SPH_2081 1917510 - 1916959 - | hypothetical protein SPH_2082 1918495 - 1917500 - | hypothetical protein SPH_2083 1919328 - 1918903 - | hypothetical protein SPH_2084 1919816 - 1919457 - | hypothetical protein SPH_2086 1920216 - 1920055 - | type II restriction-modification system regulatory protein, putative TERM 2297 1920283 - 1920243 - R 74 -9.4 -3.02121 | opp_overlap 1920255 1920255, overlap 1920255 AAAAAGAATAGCACA CTCTTGTCATAATTTTTT AAATA AAAAAATTATGACAAAAC AAGGAAGCAATTTAT TERM 2298 1920418 - 1920436 + r 72 -2.5 -5.24003 | gap 1 TTAGATTTTATTTGA GCATAACT TTCT AGTT-TGC TTTTTGATTTTTGTT TERM 2299 1920533 - 1920495 - R 100 -9.9 -4.77567 | gap 1, opp_overlap 1920495 ATCTCCACAAGAAAA CGCATACTATTAAG-CTT TTTC AAGACCTAATAATATGCG CTGTTCTGATTTGAA SPH_2087 1921335 - 1920562 - | autolysin SPH_2088 1923264 - 1921894 - | DNA-damage-inducible protein TERM 2300 1922640 - 1922629 - G 70 -3.6 -4.91285 | overlap 1922630 ACGAATATAATAAAA GCAG AGAA CCGC TGATAAACCTTGCGA TERM 2301 1923561 - 1923542 - R 73 -4.2 -4.92239 | opp_overlap 1923542, overlap 1923545 TCAAAAATCGAAAAA GTAGCGGA TTTC TCCACTGC TTTAACAGCTTATTC recA 1924737 - 1923571 - | protein RecA SPH_2090 1926048 - 1924792 - | competence/damage inducible protein CinA TERM 2302 1926107 - 1926088 - R 95 -8.6 -5.00884 | opp_overlap 1926085 1926088 ATTTTTTTGAAAAAA TCGCAGGA ATTT TCCTACGA TTGATTTTTTTATTT TERM 2303 1926088 - 1926107 + r 71 -6.4 -4.14454 | opp_overlap 1926088, overlap 1926085 ATTTTTTTGAAAAAA TCGCAGGA ATTT TCCTACGA TTGATTTTTTTATTT SPH_2091 1927149 - 1926133 - | regulator of lytrabc operon TERM 2304 1926379 - 1926404 + g 70 -9.1 -3.24924 | overlap 1926377 GTTAGGGATACTTTT TGCAGACAAAT CAAT ATTGGTCTGCA TATTGTCACTCAAAG SPH_2092 1927675 - 1927157 - | acetyltransferase SPH_2093 1928108 - 1927665 - | hypothetical protein SPH_2094 1928814 - 1928194 - | putative lipoprotein TERM 2305 1929153 - 1929119 - R 83 -11.7 -2.90061 | opp_overlap 1929115, overlap 1929122 AGAGTCACATAATGA TAAGGCTGATAGT ATTAATCTA ACTATCAGCCTTA CAGGTTATTTAACGT TERM 2306 1929150 - 1929122 - R 77 -9 -3.59023 | opp_overlap 1929115, overlap 1929119 GTCACATAATGATAA GGCTGATAGT ATTAATCTA ACTATCAGCC TTACAGGTTATTTAA SPH_2095 1930060 - 1929197 - | transcriptional activator TERM 2307 1930003 - 1930019 + g 76 -7.3 -4.17301 | overlap 1930010 CTTCTGCAAGAGTTT GTTGGGA GAG TCTCAAC TCTTTTCTTTTCAAT TERM 2308 1930010 - 1930021 + g 76 -4.4 -5.11836 | overlap 1930003 AAGAGTTTGTTGGGA GAGT CTCA ACTC TTTTCTTTTCAATCT TERM 2309 1930243 - 1930232 - H 71 -3 -5.10004 | AAAAACAAGGAAAAA GAAA GGGG TTTC ACGAATGAAGAAAAA SPH_2096 1930732 - 1931028 + | hypothetical protein TERM 2310 1931082 - 1931109 + F 100 -10.6 -4.13767 | opp_overlap 1931086, overlap 1931084 AAGCTTGTTAGTTTA TAGAGGGCAGGG GTAT TTCTGCCCTCTG TTTTAGAATAAGGAA TERM 2311 1931084 - 1931107 + F 89 -11 -3.6692 | opp_overlap 1931086, overlap 1931082 GCTTGTTAGTTTATA GAGGGCAGGG GTAT TTCTGCCCTC TGTTTTAGAATAAGG SPH_2097 1931131 - 1933146 + | bacteriocin-associated integral membrane protein SPH_2098 1933148 - 1933780 + | peptide ABC transporter ATPase SPH_2099 1933921 - 1934082 + | hypothetical protein TERM 2312 1934523 - 1934539 + T 100 -13.7 -5.71712 | overlap 1934533 1934537 ATAACCTTCGACGCG CACCCGC ATA GCGGGTG TTTTTTTGTCTCGCA TERM 2313 1934634 - 1934597 - T 76 -3.6 -5.28481 | opp_overlap 1934629 CACTTAATCAAAAAA CGCACCATATCAAA AACTAAAAAG TTTGATATCATGCG TCATGTCTTAAACTA SPH_2100 1935121 - 1934708 - | nucleoside diphosphate kinase TERM 2314 1935240 - 1935184 - R 100 -10.4 -4.09459 | gap 1, opp_overlap 1935184 1935194, overlap 1935194 1935201 GGAAAAATGGAGAAA GTTTTCAGAAGAGAGAATGAGAGAACC CTCG GGTTCTCTCATTCTCTCTTATTCTA-C TGTTTCTTCCACAGT TERM 2315 1935194 - 1935231 + r 100 -24.5 -3.90897 | opp_overlap 1935184 1935194 1935201, overlap 1935184 AGAAAGTTTTCAGAA GAGAGAATGAGAGAACC CTCG GGTTCTCTCATTCTCTC TTATTCTACTGTTTC TERM 2316 1935231 - 1935194 - R 100 -24.5 -3.32562 | opp_overlap 1935194 1935184, overlap 1935184 1935201 AGAAAGTTTTCAGAA GAGAGAATGAGAGAACC CTCG GGTTCTCTCATTCTCTC TTATTCTACTGTTTC TERM 2317 1935224 - 1935201 - R 100 -14 -3.72788 | opp_overlap 1935194 1935184, overlap 1935194 1935184 TTTCAGAAGAGAGAA TGAGAGAACC CTCG GGTTCTCTCA TTCTCTCTTATTCTA rpoC 1938909 - 1935232 - | DNA-directed RNA polymerase, beta' subunit rpoB 1942553 - 1938942 - | DNA-directed RNA polymerase, beta subunit TERM 2318 1943078 - 1943093 + r 71 -3.2 -5.093 | opp_overlap 1943078 TCAAATGAACAGAAA GCCC AATTTGAA GGGC TTTTCTTATTTTCCC SPH_2104 1943175 - 1943056 - | hypothetical protein TERM 2319 1943229 - 1943204 - R 77 -4.8 -5.1848 | gap 1, overlap 1943205 1943206 AATCAATTGAAAAAA GCTTC-GTCAC GCCTG GTGACAAAAGC CTCTAGTTTATTCTG SPH_2105 1944568 - 1943237 - | CBS domain-containing protein TERM 2320 1944844 - 1944818 - R 71 -5.2 -4.50218 | overlap 1944815 AACTAGTAAAAAGAA CTCCTACATC CATAAGT GACATAGGAG TTTAGGCTTATCTTT SPH_2106 1945683 - 1944859 - | DNA-entry nuclease (competence-specific nuclease) TERM 2321 1945707 - 1945722 + r 80 -10.4 -3.00138 | opp_overlap 1945707, overlap 1945704 TTATCTTTAGAAAAA GGCTGG TTCT CCAGCC TAATTTCCTGTAAAT TERM 2322 1945722 - 1945707 - R 100 -10.4 -4.84359 | opp_overlap 1945707 1945704 TTATCTTTAGAAAAA GGCTGG TTCT CCAGCC TAATTTCCTGTAAAT SPH_2107 1945910 - 1945722 - | hypothetical protein murA2 1947186 - 1945903 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase SPH_2109 1947407 - 1947210 - | hypothetical protein SPH_2110 1948535 - 1947498 - | ATP-dependent protease La TERM 2323 1947683 - 1947673 - G 71 -6.8 -4.08958 | GGAGCAAAGAAAATA GCAG CAC CTGC CCTAGCCGAAGCTAC coaD 1949007 - 1948519 - | pantetheine-phosphate adenylyltransferase SPH_2112 1949536 - 1948997 - | N6-adenine-specific methylase TERM 2324 1949601 - 1949574 - R 100 -11.4 -4.62163 | opp_overlap 1949579 1949580, overlap 1949579 AGACAAAAAGAGAAA GAAAACCGAACC TTGC GGTTCGATTCTC TACAAAATATTTTCG TERM 2325 1949596 - 1949579 - R 88 -7.7 -5.15682 | opp_overlap 1949579 1949580, overlap 1949574 AAAAGAGAAAGAAAA CCGAACC TTGC GGTTCGA TTCTCTACAAAATAT asnA 1950593 - 1949601 - | aspartate--ammonia ligase TERM 2326 1950692 - 1950671 - R 95 -5.2 -6.17292 | opp_overlap 1950671 AAATTTAAAAAAAAA TCAGTGTC ACTCAA AACACTGA TTTCATAGACCTTTT SPH_2114 1951389 - 1950706 - | membrane protein SPH_2115 1952185 - 1951445 - | rRNA/tRNA methylase SPH_2116 1952219 - 1952497 + | acylphosphatase TERM 2327 1952962 - 1952938 - g 79 -9.4 -3.68222 | CTCGAAGCCCAACAA GCTCTCTTTG CTGCT CAAAAAGAGC ACGGTATCAGCATGT TERM 2328 1953496 - 1953471 - g 87 -4.8 -5.41787 | gap 1 GAAAAAACACAAAAA TCGCAACGCTG GAAAA CAACGTT-CGA GATAAGAAGAAAAAG SPH_2117 1952575 - 1953501 + | membrane protein OxaA 2 TERM 2329 1953511 - 1953532 + T 76 -6.6 -4.59773 | opp_overlap 1953511 1953513 AGATAAGAAGAAAAA GGCTTAGC TGATTT GCTAAGTC TTTTTGCAAGTCAAA TERM 2330 1953532 - 1953511 - T 79 -4.4 -5.35721 | opp_overlap 1953511, overlap 1953513 AGATAAGAAGAAAAA GGCTTAGC TGATTT GCTAAGTC TTTTTGCAAGTCAAA TERM 2331 1953546 - 1953571 + T 74 -6.1 -4.56358 | opp_overlap 1953549, overlap 1953549 TCTTTTTGCAAGTCA AAAGCCCGATG TTTC CATCAGGCTTC TTTTCTATCCATGTA TERM 2332 1953568 - 1953549 - T 100 -10 -4.27316 | opp_overlap 1953546 1953549 TTTTGCAAGTCAAAA GCCCGATG TTTC CATCAGGC TTCTTTTCTATCCAT TERM 2333 1953549 - 1953568 + T 81 -7.8 -4.38744 | opp_overlap 1953549, overlap 1953546 TTTTGCAAGTCAAAA GCCCGATG TTTC CATCAGGC TTCTTTTCTATCCAT pflA 1954370 - 1953576 - | pyruvate formate-lyase 1-activating enzyme SPH_2119 1955746 - 1954496 - | diaminopimelate decarboxylase TERM 2334 1955798 - 1955777 - R 74 -6.5 -4.41348 | opp_overlap 1955777 CTGTTTGCAAAGAAA GGCTGGGAC AATC GTTCCAACC TTTAGTTCTATCTCT purR 1956640 - 1955813 - | pur operon repressor TERM 2335 1956892 - 1956865 - R 78 -2.1 -5.72616 | overlap 1956866 ATTCACATAAAAAAA CGAACATTCTT ATCCTA AAAAATGCTCA TTTTTCTTAAATTAT SPH_2121 1957848 - 1956907 - | 3'-5' exoribonuclease YhaM SPH_2122 1959094 - 1957838 - | competence-induced protein Ccs50 SPH_2123 1959758 - 1959096 - | thiamine pyrophosphokinase rpe 1960377 - 1959721 - | ribulose-phosphate 3-epimerase rsgA 1961266 - 1960388 - | ribosome small subunit-dependent GTPase A ksgA 1962140 - 1961268 - | dimethyladenosine transferase TERM 2336 1962246 - 1962221 - R 100 -9.9 -5.2422 | opp_overlap 1962221 AATCATACCAAAAAA CTATCTTTCCT CATG AAGAAAGATAG TCTTGGAAATCTTTA SPH_2127 1962579 - 1962271 - | hypothetical protein SPH_2128 1963213 - 1962572 - | peptide ABC transporter ATPase SPH_2129 1965245 - 1963215 - | immunity protein, putative TERM 2337 1965297 - 1965261 - R 76 -6.7 -4.57073 | overlap 1965262 CATTTCCTCCAAAAA GTTACTTGGTCACTT AGTGAGA AGGTGACCAAGTAAA GCTAAACAATAGGGC TERM 2338 1965296 - 1965262 - R 85 -10.2 -3.33922 | overlap 1965261 ATTTCCTCCAAAAAG TTACTTGGTCACTT AGTGAGA AGGTGACCAAGTAA AGCTAAACAATAGGG SPH_2130 1965618 - 1965322 - | lactococcin 972 TERM 2339 1965886 - 1965860 - R 100 -12.5 -5.50499 | opp_overlap 1965860 TTATATCTAAAAAAA CAGTTCTAAAG ACGAA CTTTAGAACTG TTTTGATACGAGGAC TERM 2340 1965860 - 1965886 + r 100 -12.5 -4.25104 | opp_overlap 1965860 TTATATCTAAAAAAA CAGTTCTAAAG ACGAA CTTTAGAACTG TTTTGATACGAGGAC SPH_2131 1966831 - 1965932 - | transcriptional activator SPH_2132 1967463 - 1966903 - | putative primase-like protein TERM 2341 1966998 - 1967016 + g 70 -9.6 -2.59565 | opp_overlap 1966993, overlap 1966997 1966996 CGTTAGAATAGCCGA TTCGGAGA GTC TCTCCGAG ATATTCTCTACGCTT SPH_2133 1968236 - 1967463 - | TatD family deoxyribonuclease TERM 2342 1968278 - 1968313 + r 84 -11.2 -3.08679 | gap 1, opp_overlap 1968278, overlap 1968280 1968280 1968311 TATTATACCAAAAAA GAGGAGGGG-CACCTAA TTT TTCGGTTTCCCCTCCTC TCTTCAATAGGGAGC TERM 2343 1968313 - 1968278 - R 100 -11.2 -5.23316 | gap 1, opp_overlap 1968278 1968280 1968280 1968311 TATTATACCAAAAAA GAGGAGGGG-CACCTAA TTT TTCGGTTTCCCCTCCTC TCTTCAATAGGGAGC SPH_2134 1969440 - 1968541 - | cell wall surface anchor family protein TERM 2344 1969701 - 1969678 - R 82 -3.2 -5.69262 | opp_overlap 1969678 TTACAAAAATAAAAA TCAGTAGA CTCGAGTT CCTACTGA TTTTTGATAGAATTC rpmH 1969858 - 1969724 - | ribosomal protein L34 SPH_2136 1971217 - 1970003 - | aminotransferase, class I and II TERM 2345 1971328 - 1971317 - R 79 -4.4 -5.24796 | CGTATAGAAGAAAAA CCTT GCTA AAGG CGAGGTTAAGAACGT SPH_2137 1971666 - 1971373 - | hypothetical protein SPH_2138 1971828 - 1972280 + | universal stress protein TERM 2346 1972312 - 1972288 - T 78 -7.9 -4.1021 | opp_overlap 1972293, overlap 1972293 CCTTATAATCACAAA GAAAAGGAGCC CCT AGCTCCTTTTT GTTTACGATTTATTT TERM 2347 1972293 - 1972307 + T 89 -7.1 -5.29846 | opp_overlap 1972288 1972293 TAATCACAAAGAAAA GGAGC CCCTA GCTCC TTTTTGTTTACGATT TERM 2348 1972307 - 1972293 - T 88 -7.8 -5.04733 | opp_overlap 1972293, overlap 1972288 TAATCACAAAGAAAA GGAGCC CCT AGCTCC TTTTTGTTTACGATT SPH_2139 1973664 - 1972315 - | Cof family protein TERM 2349 1973395 - 1973415 + g 70 -2.5 -5.05782 | overlap 1973397 GGCATCCTTGGTCCC TAGGGCA ATCTCCG TGCCCTC TTTTTTAGCATAGCT TERM 2350 1973574 - 1973564 - G 84 -2.4 -5.7946 | TCCTTAACAAAAAAA GGTC CTC GCCC TGTCGCTACGCCAAC TERM 2351 1973897 - 1973911 + G 81 -5.7 -5.09426 | opp_overlap 1973892 1973897, overlap 1973892 CTTGAAGGAATCCAA GTCCA CGCCT TGGAC TTTTTTAACCTTCCA SPH_2141 1973768 - 1974730 + | L-asparaginase SPH_2140 1975008 - 1974727 - | chlorohydrolase TERM 2352 1974833 - 1974845 + g 73 -7.7 -3.83205 | AAAACATGTTTTGAG CTGAC TTC GTCAG TTTCATCTACAACCT TERM 2353 1974875 - 1974893 + g 71 -9.6 -2.87931 | opp_overlap 1974859 1974858, overlap 1974858 1974878 TCAAAAACATGTTTT GAGCTGAC TTC GTCAGTTC TATCTGCAACCTCAA TERM 2354 1974920 - 1974938 + g 71 -9.6 -2.87931 | overlap 1974903 1974899 1974923 TCAAAGCAGTGCTTT GAGCTGAC TTC GTCAGTTC TATCTACAACCTCAA TERM 2355 1975070 - 1975036 - R 72 -9.5 -2.73875 | opp_overlap 1975041, overlap 1975041 TCTTGTTTAAGAGCA CAAAATCAGGAAATC TTCTC GATTCCCTGATTTTT TCTATTTACGTTTTC TERM 2356 1975065 - 1975041 - R 93 -9.4 -4.55023 | opp_overlap 1975041, overlap 1975036 TTTAAGAGCACAAAA TCAGGAAATC TTCTC GATTCCCTGA TTTTTTCTATTTACG TERM 2357 1975041 - 1975065 + r 93 -7.2 -5.56264 | opp_overlap 1975041 1975036 TTTAAGAGCACAAAA TCAGGAAATC TTCTC GATTCCCTGA TTTTTTCTATTTACG ccpA 1976082 - 1975072 - | catabolite control protein A TERM 2358 1975882 - 1975894 + g 71 -4.1 -4.8622 | overlap 1975881 TGGAATCACGACACC GACAG TGG TTGTC TTTTTACTTGCAAGA TERM 2359 1976224 - 1976235 + r 76 -4.4 -5.055 | opp_overlap 1976224 ATCACTAATTGTAAA CACT TTCA AGTG TTTTTTGAAGATTGA TERM 2360 1976270 - 1976260 - R 73 -4 -5.09895 | GATTGATTGAAAAAA TTTC ATA GAAA ACCTAGGTTTAGCTC TERM 2361 1976332 - 1976314 - R 76 -3.8 -5.35815 | TAGACTAAACAAAAA GGAGGA AACTAAG CCCTCC TAAAGTTATAGTAAA SPH_2143 1977106 - 1976507 - | response regulator SPH_2144 1978205 - 1977108 - | histidine kinase SPH_2145 1978942 - 1978205 - | ABC-type multidrug transport system, permease component TERM 2362 1978866 - 1978845 - G 73 -2.3 -5.27709 | gap 1, overlap 1978847 1978852 1978853 CCAGAAAAAAATAAA TAGAAA-GCC GTC GGCATCCCTA CCGACAATAGATAAT SPH_2146 1979828 - 1978944 - | ABC transporter, ATP-binding protein SPH_2147 1980009 - 1979815 - | hypothetical protein SPH_2148 1980212 - 1980006 - | hypothetical protein TERM 2363 1980289 - 1980274 - R 74 -6.2 -4.46212 | TCTGTCACTAGAAAA TATGAC AAAT GTCATA AAAAATTCTGTTCAA TERM 2364 1980619 - 1980603 - R 71 -5.3 -4.56597 | TTGCTTTCTTAAAAA TTTATAA GAG TTATAAA ATCTGTTAAATTTCA TERM 2365 1980744 - 1980722 - R 100 -9.2 -5.46698 | opp_overlap 1980722 CTGAAAATCAAAAAA GAGAGAACCA AAC TGATTCCCTC TTAATGTATATAATA TERM 2366 1981094 - 1981114 + r 79 -9.7 -3.31263 | overlap 1981096 ATTCGAACCCGCGAC CCCCACCTT GGC AAGGTGGTG TTCTACCACTGAACT TERM 2367 1981096 - 1981112 + r 86 -10.9 -3.22475 | overlap 1981094 TCGAACCCGCGACCC CCACCTT GGC AAGGTGG TGTTCTACCACTGAA TERM 2368 1984393 - 1984412 + r 91 -12.2 -3.62096 | opp_overlap 1984392 1984391 TGCAGTCCTACAACC CCGAAGAG TAAA CTCTTCGG TTTGCCCTCCTGCCG TERM 2369 1985462 - 1985447 - R 76 -7.6 -3.90112 | CTGTCCCGAAGGAAA GCTCTA TCTC TAGAGC GGTCAGAGGGATGTC TERM 2370 1986495 - 1986509 + r 95 -8.6 -4.89605 | GAGTTCTCACTCATT TCTGTC ACT GACAGA TTTATTGTTTTTTTC SPH_2163 1987371 - 1986892 - | competence-specific global transcription modulator TERM 2371 1987486 - 1987469 - R 89 -7.7 -5.28826 | opp_overlap 1987482 AAACTGCACAAAAAA GAGAAGC TCCA GCCTCTC TCAGGGTTATAATTC nusG 1988029 - 1987493 - | transcription termination/antitermination factor NusG TERM 2372 1988006 - 1987992 - G 71 -7.2 -3.91357 | TCATAACCAGAATAA GTTTGT AAA ACAAAC CACCCTTTATCAAAA secE 1988260 - 1988084 - | preprotein translocase, SecE subunit TERM 2373 1988393 - 1988407 + r 82 -4.2 -5.52986 | overlap 1988394 CGAACCACAAACCGC ACAAGC TAG GCTTGC TTTTTTTAGTGCCAT TERM 2374 1988394 - 1988406 + r 76 -7.7 -3.90707 | overlap 1988393 GAACCACAAACCGCA CAAGC TAG GCTTG CTTTTTTTAGTGCCA SPH_2166 1990670 - 1988475 - | penicillin-binding protein 2A TERM 2375 1990649 - 1990634 - G 77 -6.2 -4.56597 | opp_overlap 1990616 1990619 TTTCTTTTTTAAAAA GAGAAA GAAA TTTCTC AAATAATTTATCTAA SPH_2167 1990796 - 1991632 + | ribosomal large subunit pseudouridine synthase D TERM 2376 1991647 - 1991623 - T 86 -5.8 -5.43514 | opp_overlap 1991626, overlap 1991626 AAAAGAATTAAAAAA GAATGGATGA TCGTG TCATCCATTT TTCCATATAAAAAGC TERM 2377 1991644 - 1991626 - T 83 -7.5 -4.73828 | opp_overlap 1991626, overlap 1991623 AGAATTAAAAAAGAA TGGATGA TCGTG TCATCCA TTTTTCCATATAAAA TERM 2378 1991626 - 1991644 + T 86 -8.2 -4.70659 | opp_overlap 1991626 1991623 AGAATTAAAAAAGAA TGGATGAT CGT GTCATCCA TTTTTCCATATAAAA TERM 2379 1991680 - 1991661 - T 83 -6.4 -4.96848 | opp_overlap 1991661, overlap 1991670 TTTTCCATATAAAAA GCAAGACC ACAA AGCCTTGC TTTCTATCAACTCAA gap 1992706 - 1991699 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2380 1992370 - 1992382 + g 82 -7.7 -4.64598 | CAACTTTTTTAGCTC CACCT TTA AGGTG TTTTTCAGCTGCTTC SPH_2169 1993716 - 1992883 - | efflux ABC transporter, permease protein TERM 2381 1993097 - 1993087 - G 70 -3.2 -4.8622 | TTGTGCAACCAAAAA TGCC AGC AGCA AGGCGATGCCTACAA TERM 2382 1993945 - 1993991 + r 93 -9 -4.8048 | gap 1, opp_overlap 1993945 1993947 1993948, overlap 1993948 AAGAGCAGGACAAAA GAGCCTCATAAAAGGTATTGC AACTTG GTAATACCTTTT-TGAGGTGC TTTTTGATATGAGCC TERM 2383 1993988 - 1993948 - R 73 -9.3 -2.9043 | gap 1, opp_overlap 1993945 1993948, overlap 1993947 1993945 AGCAGGACAAAAGAG CCTCATAAAAGGTATTGC AACTTG GTAATACCTTTT-TGAGG TGCTTTTTGATATGA TERM 2384 1993948 - 1993988 + r 87 -11.5 -3.30658 | gap 1, opp_overlap 1993948 1993947 1993945, overlap 1993945 AGCAGGACAAAAGAG CCTCATAAAAGGTATTGC AACTTG GTAATACCTTTT-TGAGG TGCTTTTTGATATGA SPH_2170 1994765 - 1994436 - | transposase TERM 2385 1994713 - 1994735 + g 72 -3.4 -5.0133 | TCTGTTATACTACCT GTTCGCTC ACAATAA GAGAGAAC TTTTTTACGAAAATC nadC 1995768 - 1994896 - | nicotinate-nucleotide diphosphorylase (carboxylating) TERM 2386 1995881 - 1995902 + H 100 -8.9 -6.06529 | opp_overlap 1995875 1995883 1995886 TCTAACAAGTGTCAA TACAATTGT CAAG ACAATTGTA TTTTTTTTGTGTATA SPH_2172 1996005 - 1997315 + | membrane protein TERM 2387 1997297 - 1997316 + T 72 -5.8 -4.40601 | overlap 1997300 1997301 CTGGATTCTCATCCT TCTAGCTT CCTT AAGTTAGA TTTATTATCTAACTT TERM 2388 1997566 - 1997521 - T 100 -12.8 -4.93316 | gap 1, opp_overlap 1997531 CAAGAATATGAAAAA TATGAAGAAAGTGCGTTCCCA GGACA TGGGAGCGCAC-TTCGTCATA CTCAATTTGAGATAT TERM 2389 1997531 - 1997557 + T 95 -14.5 -3.23395 | opp_overlap 1997521 AAAAATATGAAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATACTCAAT SPH_2173 1997812 - 1997681 - | hypothetical protein TERM 2390 1997917 - 1997905 - R 89 -3.5 -5.95286 | ATGAAAAATAAAAAA TAAAA TTT TTTTA AATGATTATGATTCA SPH_2174 1999062 - 1998334 - | GntR family transcriptional regulator SPH_2175 1999220 - 2000629 + | beta-glucosidase SPH_2176 2000647 - 2001942 + | phosphotransferase system system, cellobiose-specific IIC component SPH_2177 2001947 - 2002255 + | lichenan-specific phosphotransferase enzyme IIB component SPH_2178 2002252 - 2002560 + | lichenan-specific phosphotransferase enzyme IIA component TERM 2391 2002577 - 2002558 - T 72 -5 -4.72007 | opp_overlap 2002558, overlap 2002560 CTCTATCAAAATAAA TAGGAACA CTGT CGTTCCCA TCTGTCTTTATTAAT TERM 2392 2002641 - 2002673 + T 100 -10.7 -5.16132 | opp_overlap 2002632 2002641 ACAAAATGATTGAAA GGATTGGATCCTG CATTACA CAAGATCCAATCC TTTTCTTTTACTCTA TERM 2393 2002673 - 2002641 - T 100 -14.3 -3.77014 | opp_overlap 2002641, overlap 2002632 ACAAAATGATTGAAA GGATTGGATCCTGCA TTA CACAAGATCCAATCC TTTTCTTTTACTCTA TERM 2394 2003473 - 2003435 - T 100 -14.1 -4.98436 | gap 1, opp_overlap 2003435 TCAATATCATAAAAA GGCATCCTATC-AGGTGT TCAA AAACCTTGATAGGATGCC TTTTATCATAGAAAA TERM 2395 2003435 - 2003473 + T 100 -16.3 -4.46212 | gap 1, opp_overlap 2003435 TCAATATCATAAAAA GGCATCCTATCAGGTGTT CAAA AAC-CTTGATAGGATGCC TTTTATCATAGAAAA TERM 2396 2003505 - 2003515 + T 79 -5.4 -5.1485 | TTACTGGATCTTTCC CTCA AAT TGAG TTTTTGTCTTGCTTC SPH_2179 2006197 - 2003546 - | aldehyde-alcohol dehydrogenase 2 TERM 2397 2005321 - 2005333 + g 81 -2.7 -5.63517 | opp_overlap 2005313, overlap 2005313 AGCAGAACTCTTCAA GAAGA GCT TTTTC TTTTTTGTTTACAAA TERM 2398 2006380 - 2006390 + r 80 -2.6 -5.63517 | overlap 2006373 GAAGTTTGTGAAATT TATT TCA AATA TTTTTTATTTCACAA TERM 2399 2006472 - 2006500 + r 76 -4.6 -5.06414 | opp_overlap 2006475 2006477, overlap 2006476 2006477 ACCTTGTGGTTCTAA TAATACCTCCTT TGGAT AAGGAGGCTTTA TTTTTGTTGAAAAAC TERM 2400 2006476 - 2006496 + r 79 -5.4 -5.05606 | opp_overlap 2006475 2006477, overlap 2006472 2006477 TGTGGTTCTAATAAT ACCTCCTT TGGAT AAGGAGGC TTTATTTTTGTTGAA TERM 2401 2006495 - 2006477 - R 75 -8.9 -3.38812 | opp_overlap 2006476 2006472 2006477, overlap 2006475 GTGGTTCTAATAATA CCTCCTT TGGAT AAGGAGG CTTTATTTTTGTTGA TERM 2402 2006477 - 2006495 + r 77 -8.9 -3.61737 | opp_overlap 2006477 2006475, overlap 2006476 2006472 GTGGTTCTAATAATA CCTCCTT TGGAT AAGGAGG CTTTATTTTTGTTGA SPH_2180 2006908 - 2006498 - | MORN motif-containing protein SPH_2181 2007338 - 2006910 - | phosphotyrosine protein phosphatase TERM 2403 2007382 - 2007365 - R 73 -4.1 -4.96848 | opp_overlap 2007365 TCTTTTATAGAAAAA CGGGA GTTCGTGA TCCCG TCTTATTTTTCAATT yajC2 2007684 - 2007385 - | preprotein translocase, YajC subunit TERM 2404 2007791 - 2007774 - R 79 -5.5 -5.06414 | opp_overlap 2007775 2007787, overlap 2007775 TTCTGGTAAGAAAAA CCAGAGC TTAC GCCCTGA TTTTTAGGATTATTT tkt2 2009777 - 2007801 - | transketolase TERM 2405 2007988 - 2008002 + g 70 -8.6 -3.33671 | CGGCGGACTGCATTT GGAAGA ATT TCTTCC TTGTAAGCTGCATCT TERM 2406 2009869 - 2009842 - R 78 -7.2 -4.37502 | overlap 2009836 ACTATTATATGAAAA TTATCCGTAT CATGCAAC ATACGGATAA CCTCCAAAGAATATT SPH_2184 2010982 - 2009891 - | L-ascorbate-6-phosphate lactonase UlaG (L-ascorbate utilization protein G) TERM 2407 2011087 - 2011051 - R 76 -3.8 -5.36314 | gap 1, opp_overlap 2011063 2011074, overlap 2011053 2011063 CAAAACACTAAAAAA GACCAA-GAAAAACACA GGTT TGTGTTCATCATTGGAC TGTCCTTCAAATATC TERM 2408 2011074 - 2011063 - R 76 -4.4 -5.20606 | opp_overlap 2011063, overlap 2011053 2011051 AAAGACCAAGAAAAA CACA GGTT TGTG TTCATCATTGGACTG SPH_2185 2012767 - 2011094 - | BglG family transcriptional regulator TERM 2409 2011942 - 2011927 - G 71 -4.8 -4.55295 | GTCCTGACAAAGAAA TTTCAA ACTT TTGAAA CAACCGTTCTCCTAA SPH_2186 2013648 - 2012944 - | L-ribulose-5-phosphate 4-epimerase (phosphoribuloseisomerase) SPH_2187 2014513 - 2013650 - | hexulose-6-phosphate isomerase, putative TERM 2410 2013991 - 2014003 + g 70 -3.4 -4.96848 | ATACAAAGAGGAAGG GAGA GTCAA TCTC TTTTTCTATAGCCAA SPH_2188 2015182 - 2014517 - | orotidine 5'-phosphate decarboxylase / HUMPS family protein SPH_2189 2015684 - 2015199 - | ascorbate-specific phosphotransferase protein IIA component TERM 2411 2015753 - 2015705 - R 95 -13.3 -3.64703 | gap 1 CCTCCTTTATTTAAA GAGGGAGAAGGACAGAAAC-GA TAACTC TCAGTTTCTGTCCAGCCCCCTC CAACCTTTTACTGTA SPH_2190 2016042 - 2015761 - | ascorbate-specific phosphotransferase protein IIB component SPH_2191 2017522 - 2016065 - | ascorbate-specific PTS system enzyme IIC TERM 2412 2017622 - 2017586 - R 76 -3.8 -5.29846 | gap 1, opp_overlap 2017609, overlap 2017588 AAGCGCAAACAAAAA GACCAAGAATTACACAG CGGA CTGT-TCACTCTTGGAC TGTATGATTTATGAT SPH_2192 2018276 - 2017653 - | hypothetical protein TERM 2413 2018320 - 2018306 - R 79 -5.7 -5.1675 | opp_overlap 2018301 2018306 CTAGCTAGCAAAAAA TCAGG TCAAC CCTGA TTTTACTTATTCTGT TERM 2414 2018306 - 2018320 + r 71 -5.7 -4.60317 | opp_overlap 2018306, overlap 2018301 CTAGCTAGCAAAAAA TCAGG TCAAC CCTGA TTTTACTTATTCTGT SPH_2193 2019313 - 2018327 - | jag protein TERM 2415 2019079 - 2019090 + g 78 -3 -5.40072 | TCTTCACAGGCTCGT TCAA ATCA TTGA TTTTTTTCGGAACGC SPH_2194 2020162 - 2019332 - | membrane protein OxaA 1 TERM 2416 2020021 - 2020007 - GR 72 -3.5 -5.05228 | ATCAAACGATAAAAA GCGAA TGATT TCCGC AAAGAAGTAAACCAA TERM 2417 2020066 - 2020050 - GR 82 -7.9 -4.63184 | opp_overlap 2020051 2020053, overlap 2020051 AATTTACTCCAAAAA TCAGCCG ATT CGGCTGT AATATCGCTAGTTAC TERM 2418 2020065 - 2020051 - GR 89 -11.4 -3.37188 | opp_overlap 2020051 2020053, overlap 2020050 ATTTACTCCAAAAAT CAGCCG ATT CGGCTG TAATATCGCTAGTTA TERM 2419 2020051 - 2020065 + gr 83 -11.4 -2.6574 | opp_overlap 2020051 2020050, overlap 2020053 ATTTACTCCAAAAAT CAGCCG ATT CGGCTG TAATATCGCTAGTTA rnpA 2020502 - 2020131 - | ribonuclease P protein component SPH_2196 2020650 - 2020519 - | hypothetical protein TERM 2420 2020623 - 2020595 - G 85 -7.5 -4.91511 | ATTTCATCAGAAAAA GAAGCTGGAAAAA TAA CTTTCCCAACTCC TTGTATTGAATATTT ackA 2021841 - 2020651 - | acetate kinase SPH_2198 2022845 - 2021892 - | adenine-specific DNA methylase TERM 2421 2021964 - 2021950 - G 73 -8.6 -3.74158 | overlap 2021948 AATTTCATTAAAACA CTTGCA TCT TGCAAG CTAGCAAGTGGATAA TERM 2422 2022895 - 2022917 + r 80 -7.1 -4.63928 | gap 1, opp_overlap 2022895 ATCCTTATAGAAAAA TCACTC-CCT GACT AGGCGAGTGA TTTTTGGGCTACTAT TERM 2423 2022917 - 2022895 - R 88 -7.1 -4.9725 | gap 1, opp_overlap 2022895 ATCCTTATAGAAAAA TCACTC-CCT GACT AGGCGAGTGA TTTTTGGGCTACTAT SPH_2200 2023500 - 2023318 - | hypothetical protein SPH_2201 2024050 - 2023637 - | hypothetical protein SPH_2202 2024489 - 2024028 - | competence protein ComGF SPH_2203 2024712 - 2024452 - | hypothetical protein SPH_2204 2025103 - 2024717 - | competence protein CglD SPH_2205 2025437 - 2025114 - | competence protein SPH_2206 2026287 - 2025439 - | competence protein CglB TERM 2424 2026345 - 2026333 - R 83 -7.7 -4.66163 | overlap 2026319 2026340 ACTCCTATCTAAAAA GGAGA TAG TCTCC ACCAGATGAAAACCG TERM 2425 2026403 - 2026416 + r 79 -5.3 -5.1287 | ATGATATTTTTTTGC TTAGC TGTA GCTAA TTTTTTCCGTCTCAG SPH_2207 2027344 - 2026403 - | putative ABC transporter subunit ComYA TERM 2426 2027413 - 2027395 - R 91 -2.4 -6.23317 | AGAAAAATAAAAAAA GCAACTCC AAA AAAGTTAC TTTTCTCTATTTTAA SPH_2208 2027785 - 2027420 - | hypothetical protein TERM 2427 2027899 - 2027875 - R 89 -7.2 -5.24129 | opp_overlap 2027875 2027877, overlap 2027877 TTTTTTGATAAAAAA TCCAGCCATC TGATG GATGACTGAA TTTCTATTTACTTAT TERM 2428 2027927 - 2027980 + r 100 -9.2 -4.77165 | gap 1, overlap 2027929 TATGTACAAAAATAT TTGGCTCTATAATATTTGTAGTGGG TAAAT CCC-TTATAGATATTATGGAGCCTA TTTTGTTGTAGAAAA TERM 2429 2027929 - 2027978 + r 95 -11.8 -4.00512 | gap 1, overlap 2027927 TGTACAAAAATATTT GGCTCTATAATATTTGTAGTGGG TAAAT CCC-TTATAGATATTATGGAGCC TATTTTGTTGTAGAA TERM 2430 2028913 - 2028886 - R 71 -7.8 -3.59738 | opp_overlap 2028885 2028888, overlap 2028890 CAGGATAGTCGTAAA TTGAGCGATAAA CGTT TTTATCGCCCTA CTTTTCGCATGCACT TERM 2431 2028909 - 2028890 - R 72 -9.4 -2.64981 | opp_overlap 2028888 2028885, overlap 2028886 ATAGTCGTAAATTGA GCGATAAA CGTT TTTATCGC CCTACTTTTCGCATG TERM 2432 2029297 - 2029275 - R 100 -9.2 -4.87626 | opp_overlap 2029279, overlap 2029279 TCTGAACATCAAAAA GAAAGGACGA ATT TTGTCCTTTC TCGAGCTTAGCTGAC TERM 2433 2029293 - 2029279 - R 73 -4.2 -4.95618 | opp_overlap 2029279, overlap 2029275 AACATCAAAAAGAAA GGACGA ATT TTGTCC TTTCTCGAGCTTAGC SPH_2210 2030414 - 2029356 - | alcohol dehydrogenase, zinc-containing TERM 2434 2030299 - 2030311 + g 71 -4.8 -4.62069 | ATATGGAGGTCTGTT CCAC AAATA GTGG TTTTTACAATACGCA TERM 2435 2030544 - 2030568 + r 100 -15.9 -4.25389 | opp_overlap 2030544 ACCCTGCATAAAAAA GCAGAAGTTAG TCT CTAACTTCTGC TTTCTCTCTTATGCT TERM 2436 2030568 - 2030544 - R 100 -15.9 -5.24531 | opp_overlap 2030544 ACCCTGCATAAAAAA GCAGAAGTTAG TCT CTAACTTCTGC TTTCTCTCTTATGCT nagA 2031728 - 2030577 - | N-acetylglucosamine-6-phosphate deacetylase TERM 2437 2031861 - 2031842 - R 85 -8.6 -4.18802 | opp_overlap 2031837 2031842 AGAGATATTTTAAAA GAGCTGGA TTTC TCCAACTC TTCTCTTTTTAATAC TERM 2438 2031842 - 2031861 + r 71 -6.4 -4.11027 | opp_overlap 2031842, overlap 2031837 AGAGATATTTTAAAA GAGCTGGA TTTC TCCAACTC TTCTCTTTTTAATAC SPH_2212 2033697 - 2031880 - | acyltransferase TERM 2439 2032817 - 2032837 + g 70 -5.4 -4.34402 | AAGCTGATCATCTTT GGCTCCTG TACGT TAGGAGTC TTTTCATGTAAGACA TERM 2440 2032914 - 2032900 - G 77 -8.6 -3.81146 | GCTGGCAAGCAAGAA GCCTAT AAG ATAGGC AAAGAGATAGGTAAA TERM 2441 2033779 - 2033748 - R 88 -7.5 -4.8487 | opp_overlap 2033754, overlap 2033754 CTATCAAAAAAAGAA GAAAAATCCTAAG AGAAAA CTTAGGATTTTTA GCTTATATCTATTCT TERM 2442 2033773 - 2033754 - R 87 -6.5 -5.54403 | opp_overlap 2033754, overlap 2033748 AAAAAAGAAGAAAAA TCCTAAG AGAAAA CTTAGGA TTTTTAGCTTATATC TERM 2443 2033754 - 2033773 + r 80 -6.5 -4.79756 | opp_overlap 2033754 2033748 AAAAAAGAAGAAAAA TCCTAAG AGAAAA CTTAGGA TTTTTAGCTTATATC tgt 2034940 - 2033798 - | queuine tRNA-ribosyltransferase TERM 2444 2034976 - 2035007 + r 74 -6.6 -4.36914 | AAAGACAGTCCCAGT TCATACTTTGTGCC CAAG GGCATACTGTATGA TTTTATCAAAAAAAG TERM 2445 2035935 - 2035923 - R 76 -7.7 -4.02979 | opp_overlap 2035923, overlap 2035926 AAAATACCAACTAAA CTACC CCT GGTAG GGCTAGTTTCTCACT TERM 2446 2035923 - 2035941 + r 76 -7.4 -3.93695 | opp_overlap 2035923 2035926 AAAATACCAACTAAA CTACCCCT GGT AGGGCTAG TTTCTCACTCCTACC TERM 2447 2036018 - 2036039 + r 95 -8.7 -5.38047 | opp_overlap 2036018 CGAAAACGTCCAAAA GCTTGAAGG TGAC CCCTCAAGC TTTTTTCTATCAATG TERM 2448 2036039 - 2036018 - R 100 -10.9 -4.19276 | opp_overlap 2036018 CGAAAACGTCCAAAA GCTTGAAGG TGAC CCCTCAAGC TTTTTTCTATCAATG TERM 2449 2037106 - 2037095 - R 82 -4.4 -5.41787 | overlap 2037105 TAAAAAATATAAAAA TGCT CCAA AGCA ACGATCGTTGTTAAA SPH_2218 2037677 - 2037564 - | hypothetical protein TERM 2450 2037740 - 2037760 + r 75 -8.3 -3.83502 | opp_overlap 2037712, overlap 2037741 AGCTAGTCGCAGGTT GCTCAAAGC ACA GCTTTGAGG TTTCATATAAAACTG TERM 2451 2037741 - 2037759 + r 84 -11.8 -2.8978 | opp_overlap 2037712, overlap 2037740 GCTAGTCGCAGGTTG CTCAAAGC ACA GCTTTGAG GTTTCATATAAAACT TERM 2452 2037861 - 2037819 - R 86 -5 -5.73978 | gap 1, opp_overlap 2037860 ATGACAAAGAAAAAA CGAACGAGA-ATCGCTTTC CATCAC GAAAGCTAGATCTCATTCG TCAAAATGATGTTAT SPH_2219 2039029 - 2037887 - | LysM domain-containing protein TERM 2453 2039102 - 2039091 - R 93 -7.2 -5.68039 | opp_overlap 2039090 2039091 AAATGTAGAAAAAAA GCCC TCTC GGGC CTATTTAACAGAACT SPH_2220 2039815 - 2039195 - | putative phosphoglycolate phosphatase SPH_2221 2041099 - 2039819 - | multi anti extrusion TERM 2454 2040810 - 2040800 - G 79 -5.4 -4.91459 | GAAGATGGACAAAAA TCCT AAA AGGA AACTTAATAGTAAGG TERM 2455 2041123 - 2041144 + r 79 -8.7 -3.78736 | opp_overlap 2041123 CCTGATGAAAAGAAA CTCAGTTGG TTTC CCAACCGAG TTTACTCCCTCTATC TERM 2456 2041144 - 2041123 - R 100 -10.9 -4.72007 | opp_overlap 2041123 CCTGATGAAAAGAAA CTCAGTTGG TTTC CCAACCGAG TTTACTCCCTCTATC thrC 2042644 - 2041160 - | threonine synthase TERM 2457 2042029 - 2042039 + g 70 -5.4 -4.42806 | opp_overlap 2042027 2042029 CCACGTCGTTAAACA TGTG CTT CACA TTTGTTTGCGCATCG SPH_2223 2043997 - 2042720 - | hypothetical protein TERM 2458 2044090 - 2044068 - R 77 -3.3 -5.57729 | AAATAATATAAAAAA GGAACGAAG AATAA CAACGTTCC TAACACTATACTATA SPH_2224 2044468 - 2044289 - | hypothetical protein TERM 2459 2044529 - 2044513 - H 82 -4.4 -5.46657 | opp_overlap 2044513 TATTCTAACAAAAAA GCTAGC AAATA ACTAGC TTTTCGATTGACAAA SPH_2225 2044718 - 2044831 + | hypothetical protein TERM 2460 2045098 - 2045075 - g 73 -6.8 -4.23045 | TAATCATCTAATAAA TCTTCTTTAC GTCA GTAAAGCAGA AAAAGGAATTTCAAC SPH_2226 2044812 - 2045267 + | hypothetical protein TERM 2461 2045298 - 2045265 - f 93 -11.3 -3.9941 | gap 1, opp_overlap 2045265 2045268, overlap 2045268 CTTGGTAGAATTAAA TAATAGTAAGAGGAGA TTT TCTCCTC-TACTACTA TTCTAAATAGAAAGG TERM 2462 2045265 - 2045298 + F 79 -9.1 -3.35679 | gap 1, opp_overlap 2045265 2045268, overlap 2045268 CTTGGTAGAATTAAA TAATAGTAAGAGGAGA TTT TCTCCTC-TACTACTA TTCTAAATAGAAAGG TERM 2463 2045295 - 2045268 - f 100 -10.8 -4.12296 | gap 1, opp_overlap 2045265 2045268, overlap 2045265 GGTAGAATTAAATAA TAGTAAGAGGAGA TTT TCTCCTC-TACTA CTATTCTAAATAGAA TERM 2464 2045268 - 2045295 + F 80 -10.8 -2.5474 | gap 1, opp_overlap 2045268 2045265, overlap 2045265 GGTAGAATTAAATAA TAGTAAGAGGAGA TTT TCTCCTC-TACTA CTATTCTAAATAGAA TERM 2465 2046146 - 2046132 - g 84 -7.8 -4.79053 | AAATATCAAAATAAA GTCGGA TTC CCCGAC CACGCTATCTTATCG SPH_2227 2045325 - 2046179 + | endonuclease/exonuclease/phosphatase family protein SPH_2228 2046445 - 2047764 + | hypothetical protein TERM 2466 2047771 - 2047816 + F 87 -11.5 -3.22774 | opp_overlap 2047773 2047813, overlap 2047773 TTAAAATAATTTCAA TAGATATTTTTGCTTAAATTC AATA GATTTTCAGCAAAAATATCTG TTCCTCATCGCTCTG TERM 2467 2047814 - 2047773 - f 85 -11.9 -3.14422 | opp_overlap 2047771 2047773, overlap 2047813 AAAATAATTTCAATA GATATTTTTGCTTAAATTC AATA GATTTTCAGCAAAAATATC TGTTCCTCATCGCTC TERM 2468 2047773 - 2047814 + F 89 -11.9 -3.17527 | opp_overlap 2047773 2047813, overlap 2047771 AAAATAATTTCAATA GATATTTTTGCTTAAATTC AATA GATTTTCAGCAAAAATATC TGTTCCTCATCGCTC TERM 2469 2047846 - 2047813 - f 79 -8.3 -3.98256 | gap 1, opp_overlap 2047773 2047771, overlap 2047773 TTTTCAGCAAAAATA TCTGTTCC-TCATCGC TCT GCGATGATAGAAAAGA GGTACACATGAAGTT SPH_2229 2047854 - 2048168 + | hypothetical protein SPH_2230 2048202 - 2048591 + | hypothetical protein SPH_2231 2048758 - 2049504 + | Ser/Thr protein phosphatase family protein TERM 2470 2049582 - 2049562 - f 89 -9 -4.43477 | overlap 2049563 TGTACCTAAGCAAAA CTGCCGAC AAGCA GTCGGCAA GCTGGAAGTGTGTTT TERM 2471 2049581 - 2049563 - f 83 -10.3 -3.25604 | overlap 2049562 GTACCTAAGCAAAAC TGCCGAC AAGCA GTCGGCA AGCTGGAAGTGTGTT TERM 2472 2049631 - 2049655 + F 93 -8.5 -4.76087 | opp_overlap 2049630 2049633, overlap 2049631 2049634 ATCACATGATAGAAG TAGGGAGGAGC TTT GCTCCTCCTAG TTTATTTATTATATA TERM 2473 2049631 - 2049654 + F 85 -10.4 -3.44025 | gap 1, opp_overlap 2049630 2049633, overlap 2049631 2049634 ATCACATGATAGAAG TAGGGAGGAGC TTT GCTCCTCC-TA GTTTATTTATTATAT TERM 2474 2049653 - 2049633 - f 81 -11.1 -2.91334 | opp_overlap 2049631 2049631 2049634, overlap 2049630 CACATGATAGAAGTA GGGAGGAGC TTT GCTCCTCCT AGTTTATTTATTATA TERM 2475 2049634 - 2049652 + F 95 -14.6 -3.26683 | opp_overlap 2049633 2049630, overlap 2049631 2049631 ACATGATAGAAGTAG GGAGGAGC TTT GCTCCTCC TAGTTTATTTATTAT SPH_2232 2049714 - 2050493 + | Rep protein SPH_2233 2050510 - 2050713 + | hypothetical protein SPH_2234 2050717 - 2051850 + | phage integrase family site specific recombinase TERM 2476 2052165 - 2052143 - g 88 -4.2 -5.72622 | opp_overlap 2052149, overlap 2052144 CTTACAAAGAAAAAA GGACAAGATT ATC AATCTTATCT CAATCTAGTAAAGAC TERM 2477 2052164 - 2052144 - g 75 -7.7 -4.01946 | opp_overlap 2052149, overlap 2052143 TTACAAAGAAAAAAG GACAAGATT ATC AATCTTATC TCAATCTAGTAAAGA SPH_2235 2051891 - 2052328 + | metal dependent phosphohydrolase, HD region TERM 2478 2052387 - 2052366 - f 76 -3.7 -5.2894 | opp_overlap 2052366 AAAGAGAAAACAAAA GACAAGGCT TATA AACTTTGTC TTTATTACTATACTG SPH_2236 2052543 - 2052779 + | CopG family protein TERM 2479 2052889 - 2052859 - g 82 -8.4 -4.15328 | opp_overlap 2052859 2052864 AATTTAAACGATAAA GATAATCGCCTATT TTT ACTAGGAGATTATC TTGATAATGGACTTC SPH_2237 2052772 - 2053503 + | serine/threonine protein phosphatase TERM 2480 2053552 - 2053574 + T 100 -13.6 -5.27779 | opp_overlap 2053556 GTCAGCTAAGCTTGA GAAAGGACAA ATT TTGTCCTTTC TTTTTTGATATTCAG TERM 2481 2053570 - 2053556 - T 79 -8.6 -3.89614 | opp_overlap 2053552 GCTAAGCTTGAGAAA GGACAA ATT TTGTCC TTTCTTTTTTGATAT SPH_2238 2054798 - 2053542 - | transposase TERM 2482 2053941 - 2053960 + g 70 -9.4 -2.64981 | opp_overlap 2053939 CATACGAAAAGTAGG GCGATAAA AATG TTTATCGC TGAGTTTACGACTAT TERM 2483 2054924 - 2054871 - R 100 -15.7 -4.77165 | opp_overlap 2054840 2054835 2054870 2054869 2054871 2054873 TTTTCTACAATAAAA TAGGCTCCATAATATCTATAGTGGA TTTA CCCACTACAAATATTATAGAGTCTA ACTTTTAATCATGTG TERM 2484 2054871 - 2054924 + r 77 -10.6 -2.51207 | opp_overlap 2054871, overlap 2054840 2054835 2054870 2054869 2054873 TTTTCTACAATAAAA TAGGCTCCATAATATCTATAGTGG ATTTAC CCACTACAAATATTATAGAGTCTA ACTTTTAATCATGTG TERM 2485 2055025 - 2055004 - R 89 -7.3 -5.25699 | opp_overlap 2054999 2055004 ATGACATAACAAAAA GACAAGGTT TCTA ACCCTTGTC TTTTCTACTATACCG TERM 2486 2055004 - 2055025 + r 80 -7.3 -4.50976 | opp_overlap 2055004, overlap 2054999 ATGACATAACAAAAA GACAAGGTT TCTA ACCCTTGTC TTTTCTACTATACCG TERM 2487 2058871 - 2058890 + r 91 -12.2 -3.62096 | opp_overlap 2058870 2058869 TGCAGTCCTACAACC CCGAAGAG TAAA CTCTTCGG TTTGCCCTCCTGCCG TERM 2488 2059940 - 2059925 - R 76 -7.6 -3.90112 | CTGTCCCGAAGGAAA GCTCTA TCTC TAGAGC GGTCAGAGGGATGTC TERM 2489 2060973 - 2060987 + r 95 -8.6 -4.89605 | GAGTTCTCACTCATT TCTGTC ACT GACAGA TTTATTGTTTTTTTC TERM 2490 2061392 - 2061376 - R 80 -2.9 -5.58454 | CTTATAGTAAAAAAA GCCAGAA TTA TACTGAC TCTTCTATCGCTCAT SPH_2255 2061831 - 2061397 - | cytidine/deoxycytidylate deaminase family protein TERM 2491 2061569 - 2061582 + g 75 -8.1 -4.03234 | opp_overlap 2061558 GGCATGGCTGAACTT CCACC ATAA GGTGG TTTATCTCGAAAGGC gltX 2063305 - 2061845 - | glutamyl-tRNA synthetase TERM 2492 2062922 - 2062945 + g 70 -8.2 -3.68222 | gap 1 AAGGTATTCATTGAT GTAGCGTGGTG TTT CGCCA-GCTAC TTCTTGACGTTCACG TERM 2493 2063397 - 2063423 + r 75 -8.1 -3.75378 | opp_overlap 2063402, overlap 2063402 ATGGATAAAGAGAGT AAAAAGAGTGG GCAAA CCACTCTTTTC TTCTATTATAGACGT TERM 2494 2063402 - 2063418 + r 90 -8 -4.92791 | opp_overlap 2063402, overlap 2063397 TAAAGAGAGTAAAAA GAGTGG GCAAA CCACTC TTTTCTTCTATTATA TERM 2495 2063418 - 2063402 - R 90 -8 -4.90217 | opp_overlap 2063402 2063397 TAAAGAGAGTAAAAA GAGTGG GCAAA CCACTC TTTTCTTCTATTATA pgi 2064778 - 2063429 - | glucose-6-phosphate isomerase SPH_2258 2064944 - 2064765 - | hypothetical protein SPH_2259 2065637 - 2064948 - | glutamine amidotransferase TERM 2496 2065768 - 2065750 - R 76 -4.5 -5.20333 | overlap 2065744 TATGGACAAGAAAAA GCTGCCC ACATA GGACAAC TTCTTTCTTATTTGA SPH_2260 2067542 - 2065776 - | ABC transporter, ATP-binding/permease protein SPH_2261 2067748 - 2067629 - | hypothetical protein SPH_2262 2067794 - 2068003 + | transposase TERM 2497 2068212 - 2068239 + T 82 -7.9 -4.63928 | opp_overlap 2068202 ATTAACACAGGATTA CCTTTGAAAAA ATGGAC TTTTTCAAGGG TTTTTGCCGTGCTCT SPH_2263 2070026 - 2068332 - | ABC transporter, ATP-binding/permease protein TERM 2498 2069990 - 2070004 + g 83 -3.5 -5.54907 | opp_overlap 2069983 GGAGCGAAGCCAGGG CCTGC CACTT GTAGG TTTTTATTTTCTGAA TERM 2499 2070076 - 2070053 - R 70 -3.8 -4.84582 | gap 1, opp_overlap 2070054, overlap 2070048 2070054 AAAAAATAGACAAAA GGGAGC-GACA ATG CGTCAGCTCCT TTTCATTCTGTTTGT TERM 2500 2070054 - 2070075 + r 76 -6.6 -4.58724 | gap 1, opp_overlap 2070053 2070048 2070054 AAAAATAGACAAAAG GGAGC-GAC AATGC GTCAGCTCC TTTTCATTCTGTTTG mutS 2072707 - 2070173 - | DNA mismatch repair protein MutS TERM 2501 2072672 - 2072640 - G 80 -4.3 -5.32699 | opp_overlap 2072640 2072643 CGAAAGAGCAAAAAA GCATCTGGATATT GCTTTTT AATATCCACATAC TGTTGCATGCCGGGT TERM 2502 2072760 - 2072731 - R 93 -9.5 -4.56597 | gap 1, opp_overlap 2072730 2072731 2072733 2072734, overlap 2072734 TCTCCTTTTCAAAAA TAA-GTCTTGAGAG CAA CTCCCAAGACCTTA CTTATCTTTCATCAA TERM 2503 2072734 - 2072756 + r 78 -10.6 -2.74334 | opp_overlap 2072734 2072731, overlap 2072733 2072731 2072730 CCTTTTCAAAAATAA GTCTTGAGAG CAA CTCCCAAGAC CTTACTTATCTTTCA TERM 2504 2072756 - 2072734 - R 100 -12.8 -4.40561 | opp_overlap 2072733 2072731 2072730 2072734, overlap 2072731 CCTTTTCAAAAATAA GTCTTGAGAG CAA CTCCCAAGAC CTTACTTATCTTTCA argR 2073204 - 2072758 - | arginine repressor TERM 2505 2072843 - 2072829 - G 73 -7.2 -4.07133 | overlap 2072836 GATCTCGACAAATAA CCAATA AGG TATTGG CACCAGCAACTGTTC TERM 2506 2073563 - 2073553 - g 73 -5.4 -4.58283 | opp_overlap 2073547 CAAGCCTTTGAAAAA GTTG TCG CAAC AGGACCTTACGTTAA argS 2073340 - 2075031 + | arginyl-tRNA synthetase TERM 2507 2075070 - 2075041 - T 90 -11.7 -3.64236 | gap 1, overlap 2075033 ATGTAAATCGCCAAA GTTACTT-GATTGC AAA GCAATCTAAGTAAC TAACGCCAAATCCTA SPH_2267 2075611 - 2075222 - | mobile genetic element TERM 2508 2075280 - 2075322 + g 86 -8 -4.98531 | overlap 2075267 2075281 ATTCGTAATCCGAAG TGTTTACGATGATTTCGATA GGT TGTTGAAATCATTTTAAACG TTTTTACTTTGGCAA TERM 2509 2075281 - 2075321 + g 74 -9.3 -3.58396 | overlap 2075267 2075280 TTCGTAATCCGAAGT GTTTACGATGATTTCGATA GGT TGTTGAAATCATTTTAAAC GTTTTTACTTTGGCA SPH_2268 2075765 - 2076250 + | hypothetical protein SPH_2269 2076334 - 2077041 + | alkaline phosphatase synthesis transcriptional regulatory protein PhoP SPH_2270 2077042 - 2078373 + | histidine kinase PnpS TERM 2510 2078401 - 2078419 + F 93 -8.2 -5.73672 | CTATTTTTAGGAGCA GCCATTTT TCA AAAGTGGC TTTTTTTGATTCTTT TERM 2511 2078754 - 2078739 - g 85 -4 -5.61596 | overlap 2078746 ACGGTGATAAAAAAA TTGACA ACAC TGCCAA AACAGCTGTGATTCA SPH_2271 2078540 - 2079415 + | ABC transporter substrate-binding protein - phosphate transport TERM 2512 2079486 - 2079504 + F 71 -7.4 -3.69809 | opp_overlap 2079486 2079483 2079479, overlap 2079483 TAAAGAAGGCAAGTA GGGAGGTG TCG TATCTCCC TTACTTTCTTCACTA pstC2 2079533 - 2080396 + | phosphate ABC transporter, permease protein PstC pstA2 2080389 - 2081204 + | phosphate ABC transporter, permease protein PstA pstB3 2081206 - 2081958 + | phosphate ABC transporter, ATP-binding protein phoU2 2081973 - 2082623 + | phosphate transport system regulatory protein PhoU TERM 2513 2082655 - 2082672 + F 77 -3.4 -5.39755 | ATCCTTAAAAGAGAA GAGTAC GATTAA GTGCTC TTTTTTATGGTTGTA SPH_2276 2082699 - 2083124 + | transposase, IS1380-Spn1 related, truncation SPH_2278 2083890 - 2084906 + | glycerol-3-phosphate dehydrogenase (NAD(P)+) galU 2084928 - 2085827 + | UTP-glucose-1-phosphate uridylyltransferase TERM 2514 2085995 - 2085981 - T 100 -11.4 -5.83211 | opp_overlap 2085979 TAGTAAAACAAAAAA GCACCG AAT CGGTGC GCACTTTTTCAAGTT TERM 2515 2087254 - 2087234 - T 74 -6.2 -4.48903 | opp_overlap 2087234, overlap 2087229 CAAAACACATTAAAA GCTACTCA TTTTT TAAGTAGC TTTTTTCTTATTCAA TERM 2516 2087234 - 2087254 + T 84 -4 -5.64873 | opp_overlap 2087229 2087234 CAAAACACATTAAAA GCTACTCA TTTTT TAAGTAGC TTTTTTCTTATTCAA TERM 2517 2087340 - 2087352 + T 73 -7.7 -3.83205 | CCGTAGGTATGGTTA CTGAC TTC GTCAG TTTCATCTACAACCT TERM 2518 2087384 - 2087366 - T 78 -10.4 -2.61383 | opp_overlap 2087365 2087382, overlap 2087365 AGTTTCATCTACAAC CTCAAAAC CAT GTTTTGAG CTGACTTCGTCAGTT TERM 2519 2087382 - 2087400 + T 76 -9.6 -2.87931 | opp_overlap 2087366 2087365, overlap 2087365 2087385 TCAAAACCATGTTTT GAGCTGAC TTC GTCAGTTC TATCTACAACCTCAA TERM 2520 2087385 - 2087397 + T 71 -7.7 -3.58905 | overlap 2087382 AAACCATGTTTTGAG CTGAC TTC GTCAG TTCTATCTACAACCT TERM 2521 2087430 - 2087410 - T 72 -8.3 -3.35996 | overlap 2087411 CAGTTCTATCTACAA CCTCAAAGC AGT GCTTTGAGC AACCTGCGGCTAGCT TERM 2522 2087429 - 2087411 - T 84 -11.8 -2.61383 | overlap 2087410 AGTTCTATCTACAAC CTCAAAGC AGT GCTTTGAG CAACCTGCGGCTAGC SPH_2282 2088161 - 2087484 - | peptidase, S54 SPH_2283 2088684 - 2088145 - | 5-formyltetrahydrofolate cyclo-ligase SPH_2284 2089826 - 2088696 - | M20/M25/M40 family peptidase TERM 2523 2089853 - 2089877 + r 87 -6.5 -5.46698 | gap 1, opp_overlap 2089853 CCGATATAGCAGAAA GAGGCTGGAA AAAGGG TTCC-GCCTC TTTTTTACTTTTACA SPH_2285 2090592 - 2089894 - | galactoside O-acetyltransferase TERM 2524 2090386 - 2090372 - G 73 -10 -2.84794 | overlap 2090369 GGAACTGCAGAATTA CGAGCA TCT TGCTCG ACAACATAATCTTGA TERM 2525 2090655 - 2090638 - R 76 -4.1 -5.15634 | overlap 2090621 TATTCTACCAAAAAA GGCCTCA AATT TGAAACC TTTTTGTCTGTTTTT SPH_2286 2091733 - 2090822 - | membrane protein TERM 2526 2091784 - 2091762 - R 100 -7.1 -5.83211 | gap 1, opp_overlap 2091762 CACGAAAAGAAAAAA GTGGC-AATC CATT GATTGGCCAC TTCATTTAGAGAATT SPH_2287 2094263 - 2091798 - | penicillin-binding protein 1B TERM 2527 2094139 - 2094152 + g 78 -3.9 -5.2189 | AAAATGGCTGACTTA TCTAA GGTT TTAGA TTTTTTGGTACTTGA TERM 2528 2094211 - 2094229 + g 100 -11.8 -5.13016 | overlap 2094216 TTATTTTTTTGTTTT TGCTGGAA AAA TTCCAGCA TTTTTCGTTTTAATT tyrS 2094405 - 2095661 + | tyrosyl-tRNA synthetase TERM 2529 2095689 - 2095715 + T 81 -6 -4.89233 | gap 1, opp_overlap 2095689 TTATCTATAAACAAA GGAGTTAGCCT CGAGAA AGG-TAACTCC TTTTTGCTGTTAATA TERM 2530 2095715 - 2095689 - T 76 -6.7 -4.57482 | gap 1, opp_overlap 2095689 TTATCTATAAACAAA GGAGTTAGCCTC GAGA AAGG-TAACTCC TTTTTGCTGTTAATA SPH_2289 2097802 - 2095739 - | P-type ATPase-metal/cation transport TERM 2531 2096945 - 2096963 + g 75 -9.6 -3.34506 | opp_overlap 2096944 2096947 CTTCATCAACTCAAT CAGCTGTA AAA TACGGCTG TTCATCTGATTATCT SPH_2290 2098082 - 2097804 - | hypothetical protein SPH_2291 2098234 - 2099082 + | rRNA TERM 2532 2099128 - 2099140 + T 73 -7.7 -3.83205 | CCGTACGTATGGTTA CTGAC TTC GTCAG TTTCATCTACAACCT TERM 2533 2099172 - 2099154 - T 78 -10.4 -2.61383 | opp_overlap 2099153, overlap 2099153 AGTTTCATCTACAAC CTCAAAAC CAT GTTTTGAG CTGACTTCGTCAGTT TERM 2534 2099173 - 2099185 + T 73 -7.7 -3.83205 | AAACCATGTTTTGAG CTGAC TTC GTCAG TTTCATCTACAACCT TERM 2535 2099217 - 2099199 - T 78 -10.4 -2.61383 | opp_overlap 2099198, overlap 2099198 AGTTTCATCTACAAC CTCAAAAC CAT GTTTTGAG CTGACTTCGTCAGTT TERM 2536 2099218 - 2099230 + T 82 -7.7 -4.52857 | AAACCATGTTTTGAG CTGAC TTC GTCAG TTTTATCTGCAACCT TERM 2537 2099824 - 2099837 + T 76 -2.5 -5.44721 | overlap 2099830 AAATCCGTCCATTTA TATTT TGAA AAATA TTTTTTTAACATAAT TERM 2538 2100607 - 2100630 + T 71 -9 -3.03554 | gap 1, opp_overlap 2100613, overlap 2100610 GGTGGATCAGCATTG CAATG-ACGAC TTC GTCGTACATTG TATATAATTACTTAA TERM 2539 2100697 - 2100653 - T 100 -11.1 -5.30616 | gap 1, opp_overlap 2100655 2100657 2100662, overlap 2100655 2100657 TTACTTAAAGAAAAA GAG-AGAAAAGGAATGATCT TATACC AGATCATTCCTTTTCTGCTT TCTGTAAATCCCTCG TERM 2540 2100694 - 2100655 - T 100 -13.9 -4.2793 | opp_overlap 2100655 2100657 2100662, overlap 2100653 2100657 ACTTAAAGAAAAAGA GAGAAAAGGAATGATCT TATACC AGATCATTCCTTTTCTG CTTTCTGTAAATCCC TERM 2541 2100655 - 2100695 + T 100 -13.7 -4.06678 | gap 1, opp_overlap 2100655 2100653 2100657, overlap 2100657 2100662 ACTTAAAGAAAAAGA G-AGAAAAGGAATGATCT TATACC AGATCATTCCTTTTCTGC TTTCTGTAAATCCCT TERM 2542 2100657 - 2100692 + T 100 -16.5 -3.07132 | opp_overlap 2100655 2100653 2100657, overlap 2100655 2100662 TTAAAGAAAAAGAGA GAAAAGGAATGATCT TATACC AGATCATTCCTTTTC TGCTTTCTGTAAATC TERM 2543 2100692 - 2100657 - T 100 -16.5 -3.71991 | opp_overlap 2100657 2100655 2100662, overlap 2100655 2100653 TTAAAGAAAAAGAGA GAAAAGGAATGATCT TATACC AGATCATTCCTTTTC TGCTTTCTGTAAATC TERM 2544 2100662 - 2100687 + T 100 -10.6 -4.6575 | opp_overlap 2100657 2100655 2100653, overlap 2100657 2100655 GAAAAAGAGAGAAAA GGAATGATCT TATACC AGATCATTCC TTTTCTGCTTTCTGT SPH_2294 2100826 - 2100671 - | hypothetical protein TERM 2545 2100726 - 2100748 + g 80 -11.4 -2.89921 | overlap 2100718 CGGAGTGTGTTTGGC GCTTTGATAC GAA GTGTCAAAGC TGTATAAACGTTACT TERM 2546 2101028 - 2101002 - R 100 -11 -5.27769 | opp_overlap 2101005 AGAAAAAACTAAAAA GAATGTAGGG TTTATTT CCCTACATTC TTAAAATAACTTAGT TERM 2547 2101359 - 2101408 + r 77 -9.5 -3.21689 | opp_overlap 2101359 2101373, overlap 2101373 ATTGACCCAAATCCA CAGCATTTAAAAAAGCGAATTTC AATC GAAACTCGCTTTTTTACAAGATG TATTAGTATAAATTT TERM 2548 2101408 - 2101359 - R 83 -11.7 -2.66451 | opp_overlap 2101359 2101373, overlap 2101373 ATTGACCCAAATCCA CAGCATTTAAAAAAGCGAATTTC AATC GAAACTCGCTTTTTTACAAGATG TATTAGTATAAATTT TERM 2549 2101373 - 2101394 + r 88 -7.3 -5.02476 | opp_overlap 2101359 2101373, overlap 2101359 ACAGCATTTAAAAAA GCGAATTTC AATC GAAACTCGC TTTTTTACAAGATGT TERM 2550 2101394 - 2101373 - R 100 -9.5 -5.11613 | opp_overlap 2101373 2101359, overlap 2101359 ACAGCATTTAAAAAA GCGAATTTC AATC GAAACTCGC TTTTTTACAAGATGT SPH_2295 2103801 - 2101543 - | glycogen phosphorylase TERM 2551 2102448 - 2102469 + g 71 -5.3 -4.60487 | gap 1, overlap 2102440 2102448 2102449 TTTCTTTGACAGCTG CT-TTGTCTT CAT AAGACAAAAG TTTTTCAAGCTCATC TERM 2552 2103671 - 2103684 + g 81 -6.7 -4.7078 | TAAACTTTCTTTTTA CCAGT GTTG ACTGG TTTTTGGCTACTTGC malQ 2105344 - 2103827 - | 4-alpha-glucanotransferase TERM 2553 2105448 - 2105460 + H 83 -4.9 -5.43514 | overlap 2105452 AGCATAATTGCAAGC GTTTT TAA AAAAC TTTTTTGATTATTTT TERM 2554 2105913 - 2105965 + H 76 -4.3 -5.20333 | gap 1, opp_overlap 2105952, overlap 2105914 2105952 TTTAACAAAAACACT TGCAACCGTTTTCTATT-TGTGCT ATACTA AGCTCATAAAGGAAAACGTTTGCG TTTTTCTTGTCAATA TERM 2555 2107032 - 2107016 - g 85 -5.9 -5.30348 | ACTGAACAACAAAAA GCCTTAT ACG ATAAGAC TAATGAAATCCCAGC SPH_2297 2106011 - 2107282 + | maltose/maltodextrin-binding protein TERM 2556 2108094 - 2108106 + G 70 -9.1 -3.22068 | TTTCCTTCTTCCTTG GGCTG TTC CAGCC TTCATCACTATCTTG SPH_2298 2107393 - 2108685 + | maltodextrin transport system permease protein MalC SPH_2299 2108687 - 2109529 + | ABC transporter membrane-spanning permease - maltose/maltodextrin TERM 2557 2109537 - 2109523 - f 73 -8.6 -3.29043 | AAGTGGTGGCGACAA GGGATA ATA TATCCC CGCCACCCTTTTTCA SPH_2300 2109791 - 2110591 + | maltodextrose utilization protein MalA SPH_2301 2110601 - 2111587 + | HTH-type transcriptional regulator MalR (maltose operontranscriptional repressor) TERM 2558 2111665 - 2111614 - T 84 -11.2 -3.07685 | gap 1, opp_overlap 2111616 2111621, overlap 2111621 AAAAGCCTTTAAAAG CAA-AAAACGCATACTATCAGGTGT TAA AAACTTGATAGTCTGCGTTTTATTG TGGGAAGACTCATTT TERM 2559 2111616 - 2111662 + T 89 -11.8 -3.29144 | opp_overlap 2111614 2111621, overlap 2111621 AAGCCTTTAAAAGCA AAAAACGCATACTATCAGGTGT TAA AAACTTGATAGTCTGCGTTTTA TTGTGGGAAGACTCA TERM 2560 2111657 - 2111621 - T 100 -9.5 -5.46698 | opp_overlap 2111616 2111621, overlap 2111614 TTTAAAAGCAAAAAA CGCATACTATCAGGTGT TAA AAACTTGATAGTCTGCG TTTTATTGTGGGAAG TERM 2561 2111621 - 2111657 + T 100 -11.7 -4.77165 | opp_overlap 2111621 2111614, overlap 2111616 TTTAAAAGCAAAAAA CGCATACTATCAGGTGT TAA AAACTTGATAGTCTGCG TTTTATTGTGGGAAG SPH_2302 2112635 - 2111694 - | YitT family protein TERM 2562 2111858 - 2111891 + g 91 -8.1 -5.35222 | overlap 2111859 GATTATAGGTTCCTT CTGCATCGTGGATCA TGGT TGCTCCGCGGTGCAA TTTTTTATGGATTTT TERM 2563 2111859 - 2111890 + g 88 -11.6 -3.78693 | overlap 2111858 ATTATAGGTTCCTTC TGCATCGTGGATCA TGGT TGCTCCGCGGTGCA ATTTTTTATGGATTT aspS 2114376 - 2112613 - | aspartyl-tRNA synthetase TERM 2564 2114180 - 2114170 - G 70 -5.4 -4.45738 | CACCTCAATAACAAA TTCG CTA CGAA GGCTTTCAGCTGTTG TERM 2565 2114555 - 2114567 + r 73 -7.7 -3.84266 | ACCGTAGTACGGTTA CTGAC TTC GTCAG TTTCATCTACAATCT TERM 2566 2114599 - 2114581 - R 78 -10.4 -2.61383 | opp_overlap 2114580, overlap 2114580 AGTTTCATCTACAAT CTCAAAAC CAT GTTTTGAG CTGACTTCGTCAGTT TERM 2567 2114600 - 2114612 + r 73 -7.7 -3.72695 | AAACCATGTTTTGAG CTGAC TTC GTCAG TTTCATCCACAACCT TERM 2568 2114644 - 2114626 - R 78 -10.4 -2.61383 | opp_overlap 2114625, overlap 2114625 AGTTTCATCCACAAC CTCAAAAC CAT GTTTTGAG CTGACTTCGTCAGTT TERM 2569 2114645 - 2114657 + r 73 -7.7 -3.83205 | AAACCATGTTTTGAG CTGAC TTC GTCAG TTTCATCTACAACCT TERM 2570 2114689 - 2114671 - R 78 -10.4 -2.61383 | opp_overlap 2114670, overlap 2114670 AGTTTCATCTACAAC CTCAAAAC CAT GTTTTGAG CTAACTTCGTCAGTT TERM 2571 2114734 - 2114716 - R 78 -10.4 -2.61383 | overlap 2114715 AGTTTCATCCACAAC CTCAAAAC AGT GTTTTGAG CAACCTGCGGCTAGC TERM 2572 2114811 - 2114793 - R 100 -9.6 -5.16133 | opp_overlap 2114793 2114792 AGTATAATACAAAAA TCCGATGA ACT TCACCGGA CTCTTTTATTTTGAA SPH_2305 2115047 - 2114817 - | hypothetical protein TERM 2573 2114922 - 2114908 - G 73 -7.1 -4.08692 | TAAGCCGTCCCAAAA CGCAG TACAC CTGCG ATAGGAGCAAAGACA SPH_2306 2115706 - 2115065 - | CAAX amino protease TERM 2574 2115625 - 2115613 - G 74 -9.1 -3.51976 | overlap 2115609 AAGCGCCTAAAGCAA GCGAC GCA GTCGC GAGCCCCTGAATAAA SPH_2307 2116452 - 2115718 - | hypothetical protein SPH_2308 2116652 - 2116455 - | hypothetical protein SPH_2309 2116858 - 2116652 - | hypothetical protein TERM 2575 2116822 - 2116834 + g 77 -7.7 -4.14615 | GATTGAGACCATCGC GAGCT CGA AGCTC TTTTAGACGATTTTT SPH_2310 2117182 - 2116868 - | hypothetical protein TERM 2576 2117240 - 2117267 + r 100 -10.8 -4.2928 | GTAACATATCTTTTT CTTTTTGACAAT TATA GTTGTCAAAAAG TTTATGATTTTTGTC TERM 2577 2117321 - 2117300 - R 100 -10.2 -5.45802 | opp_overlap 2117299 2117298 TTTGCAAAAGAAAAA GGTCAGGA GTAGGT TCCTGACC ACTTTATCTATCATT SPH_2311 2117463 - 2117335 - | chlorohydrolase TERM 2578 2117396 - 2117408 + g 73 -7.7 -3.83205 | CCGTAGGTATGGTTA CTGAC TTC GTCAG TTTCATCTACAACCT TERM 2579 2117440 - 2117422 - G 72 -10.4 -2.61383 | opp_overlap 2117421, overlap 2117421 AGTTTCATCTACAAC CTCAAAAC CAT GTTTTGAG CTGACTTCGTCAGTT TERM 2580 2117485 - 2117467 - R 78 -10.4 -2.61383 | overlap 2117466 AGTTCTATCCACAAC CTCAAAAC AGT GTTTTGAG CAACCTGCGGCTAGC hisS 2118812 - 2117523 - | histidyl-tRNA synthetase SPH_2313 2120137 - 2118890 - | hypothetical protein SPH_2314 2121179 - 2120328 - | positive transcriptional regulator of glucosyltransferase and Spp phenotype SPH_2315 2121288 - 2121154 - | hypothetical protein SPH_2316 2121303 - 2121644 + | hypothetical protein TERM 2581 2121694 - 2121675 - T 100 -9.3 -5.32699 | opp_overlap 2121675, overlap 2121687 TTAAAGATGAAAAAA GCAAGCC GAAAAT GGCTTGC TTTTTGATACTCAAT TERM 2582 2121675 - 2121694 + T 100 -10 -4.77438 | opp_overlap 2121675 2121687 TTAAAGATGAAAAAA GCAAGCCG AAAA TGGCTTGC TTTTTGATACTCAAT TERM 2583 2121749 - 2121767 + T 78 -10.4 -2.61383 | overlap 2121748 ACTAGCCGCAGGTTG CTCAAAAC ACT GTTTTGAG GTTGTGGATAGAACT TERM 2584 2121841 - 2121823 - T 76 -9.6 -2.87931 | opp_overlap 2121838 2121839, overlap 2121826 2121838 TTGAGGTTGTAGATA GAACTGAC GAA GTCAGCTC AAAACACTGTTTTGA TERM 2585 2121838 - 2121826 - T 71 -7.7 -3.58905 | overlap 2121823 AGGTTGTAGATAGAA CTGAC GAA GTCAG CTCAAAACACTGTTT TERM 2586 2121839 - 2121857 + T 78 -10.4 -2.61383 | opp_overlap 2121823 2121838, overlap 2121838 AACTGACGAAGTCAG CTCAAAAC ACT GTTTTGAG GTTGTAGATAGAACT TERM 2587 2121883 - 2121871 - T 71 -7.7 -3.58905 | AGGTTGTAGATAGAA CTGAC GAA GTCAG TAACCATACCTACGG ilvD 2123646 - 2121943 - | dihydroxy-acid dehydratase TERM 2588 2122518 - 2122506 - G 74 -9.1 -3.52073 | opp_overlap 2122505 2122504 CGTTCAAGATGATAA GCGGA CCA TCCGC ACGTTTTGGATTTTC SPH_2319 2124811 - 2123879 - | transketolase, C- subunit SPH_2320 2125665 - 2124808 - | transketolase SPH_2321 2127015 - 2125669 - | ascorbate-specific PTS system enzyme IIC SPH_2322 2127312 - 2127028 - | phosphotransferase system, galactitol-specific IIB component TERM 2589 2127141 - 2127125 - G 76 -10.9 -2.74701 | overlap 2127122 ACATCTCCAAGATGA CTAGCTG AAT CAGCTAG ATCACGACCAACAAT TERM 2590 2127339 - 2127374 + r 77 -8.6 -3.60431 | opp_overlap 2127347, overlap 2127340 CCTGTTTAATTATCA TTTTAATATCATCATA GTTT TTTGATGATATTAAAG TTTGAACATGATTTT TERM 2591 2127340 - 2127373 + r 75 -9.9 -2.75536 | opp_overlap 2127347, overlap 2127339 CTGTTTAATTATCAT TTTAATATCATCATA GTTT TTTGATGATATTAAA GTTTGAACATGATTT SPH_2323 2129346 - 2127316 - | transcriptional regulator, BglG family protein SPH_2324 2129537 - 2130544 + | integral membrane protein SPH_2325 2130547 - 2130747 + | hypothetical protein TERM 2592 2130752 - 2130781 + F 100 -9.4 -5.38348 | TTGATATTTAACATC TTCTCCTGTCTG CCGTGT CGGATAGGAGAA TTTTTTCATCTTTTT TERM 2593 2130788 - 2130828 + F 70 -8 -3.29987 | gap 1, overlap 2130786 2130792 2130799 ATAGGAGAATTTTTT CATCTTTTTTTGTCAAGTA ACTT TACTTTACAAAAAAA-ATG TGTTATCCTAGTATG TERM 2594 2130792 - 2130825 + F 75 -9.9 -2.5214 | overlap 2130788 2130786 2130799 GAGAATTTTTTCATC TTTTTTTGTCAAGTA ACTT TACTTTACAAAAAAA ATGTGTTATCCTAGT rpmF 2130899 - 2131081 + | ribosomal protein L32 TERM 2595 2131238 - 2131211 - g 85 -8.6 -4.31412 | gap 1, opp_overlap 2131214 AAATACTCACCAAAA CTTC-GCAAACAC GTT GTGTTTACAGAAG TGAAGTAAGCATTCA rpmG2 2131097 - 2131246 + | ribosomal protein L33 TERM 2596 2131272 - 2131297 + T 82 -5.6 -5.24551 | gap 1, opp_overlap 2131272 2131278, overlap 2131278 CGAATCAATACAGAA GA-AAAACGCT TGATC AGCGTTTTTTC TTTTTGTTAATTTCA TERM 2597 2131278 - 2131290 + T 93 -4.8 -6.01725 | opp_overlap 2131272 2131278, overlap 2131272 AATACAGAAGAAAAA CGCT TGATC AGCG TTTTTTCTTTTTGTT TERM 2598 2131290 - 2131278 - T 80 -4.8 -5.28561 | opp_overlap 2131278 2131272, overlap 2131272 AATACAGAAGAAAAA CGCT TGATC AGCG TTTTTTCTTTTTGTT TERM 2599 2131677 - 2131698 + T 84 -5.9 -5.26875 | opp_overlap 2131677 TGAGAATCCAAAAAA TCTTCCTAC ATAT GTAAGAAGA TTTTTTAGTTCAGAA TERM 2600 2131698 - 2131677 - T 90 -8.1 -5.1925 | opp_overlap 2131677 TGAGAATCCAAAAAA TCTTCCTAC ATAT GTAAGAAGA TTTTTTAGTTCAGAA SPH_2328 2133663 - 2131738 - | choline binding protein PcpA TERM 2601 2132572 - 2132605 + g 100 -13.5 -4.69622 | gap 1, opp_overlap 2132565 2132564 TGTTAAACTTTTTAA TTTTGGTAAAC-CGTT CAT AACGTGTTTACCAAAA TTTTTAACATTATCT TERM 2602 2133386 - 2133398 + g 70 -3.4 -4.84359 | ACGGTAAATACTTTA TCAC CTACT GTGA TTTTTGTAGGAATCG TERM 2603 2134094 - 2134069 - R 82 -3.3 -5.60864 | overlap 2134071 2134086 GATAGATGAAAAAAA CATTGACACCT ACCA AAGAGTCAATA GACTCCCTGCGAAAT TERM 2604 2134707 - 2134665 - R 88 -7.2 -4.98531 | overlap 2134659 2134699 TTGCCAAAGTAAAAA CGTTTAAAATGTTTTCAACA ACC TATCGAAATCATCGTAAACG CTTCGGATTACGAAT SPH_2332 2135110 - 2134835 - | hypothetical protein TERM 2605 2135337 - 2135368 + r 73 -4.5 -4.9218 | gap 1, opp_overlap 2135342, overlap 2135339 2135342 TTCTTCTGTTTCACG CGA-AACACCCTGC GCCAA GCAAGGTGTTCTTG TTTTTATACTCAATG TERM 2606 2135342 - 2135362 + r 74 -6.8 -4.36508 | opp_overlap 2135342, overlap 2135339 2135337 CTGTTTCACGCGAAA CACCCTGC GCCAA GCAAGGTG TTCTTGTTTTTATAC TERM 2607 2135362 - 2135342 - R 77 -9 -3.59979 | opp_overlap 2135342 2135339 2135337 CTGTTTCACGCGAAA CACCCTGC GCCAA GCAAGGTG TTCTTGTTTTTATAC TERM 2608 2135422 - 2135440 + r 78 -10.4 -2.61264 | overlap 2135421 GCTAGCTGCAGGCTG CTCAAAAC ACT GTTTTGAG GTTGTAGATGGAAGC SPH_2334 2137367 - 2135487 - | N-acetyl-beta-D-glucosaminidase SPH_2335 2138230 - 2137361 - | ROK family protein TERM 2609 2138284 - 2138248 - R 73 -4.4 -4.91109 | opp_overlap 2138248 TTTTTACCATAAAAA GGGGCGAATCAGCA GTTAGTTCT TACTTTTTCGCCCC TCCTTTCTTTTGATG TERM 2610 2138310 - 2138322 + r 72 -4.9 -4.67552 | TGATGTTTACTTTTT GAAAT TAA ATTTC TTCTTTTTTGATGAA SPH_2336 2140950 - 2138314 - | sugar hydrolase SPH_2337 2142448 - 2141168 - | twin-arginine translocation pathway signal TERM 2611 2142750 - 2142765 + G 81 -5.4 -5.14965 | GCCCCAGACCAGTGA CCAGGA TGGA TCTTGG TTTTTTGATCCGCAT TERM 2612 2143777 - 2143753 - g 75 -7.9 -4.03888 | overlap 2143747 2143775 GACCTAGAAGAAGAA CTCCTTCAAGC CAT GCTTGAAACAG CCAGCAAGGCCGATC SPH_2338 2142619 - 2144703 + | cell wall antigen TERM 2613 2144710 - 2144740 + T 100 -11.3 -4.4017 | opp_overlap 2144713, overlap 2144713 AATCACTAATAACCA AAAGAACCTTTGC ATCGC GCAAAGGTTCTTC TTTTATGAAACTTGG TERM 2614 2144713 - 2144737 + T 100 -13 -4.31397 | opp_overlap 2144713, overlap 2144710 CACTAATAACCAAAA GAACCTTTGC ATCGC GCAAAGGTTC TTCTTTTATGAAACT TERM 2615 2144737 - 2144713 - T 100 -13.7 -4.5774 | opp_overlap 2144713 2144710 CACTAATAACCAAAA GAACCTTTGCA TCG CGCAAAGGTTC TTCTTTTATGAAACT SPH_2339 2146422 - 2144743 - | FucA TERM 2616 2145259 - 2145245 - G 70 -5.6 -4.3467 | ACTTGCACATGAAAA GCAGCG ATT CGTTGC CCTAGCTTCAAATCT TERM 2617 2145849 - 2145861 + g 80 -6.3 -4.67904 | opp_overlap 2145849 CCTGCAGGTCACGAA TGGTT TCA AACCA TTTTTCAAATTCATA TERM 2618 2146941 - 2146965 + H 70 -4.5 -4.68446 | opp_overlap 2146953, overlap 2146941 2146942 2146946 2146948 TTGGTCATTTGTATA TTTTTTGAAAA ATT TTTTAAAAAAA TTTTATATCCTTTTT TERM 2619 2147537 - 2147521 - g 71 -9.5 -2.78547 | overlap 2147524 TCACGGCATCAAGGA CAACCAA GAA TTGGTTG AAAAAACAATGGCTG arcA 2147177 - 2148406 + | arginine deiminase argF 2148464 - 2149480 + | ornithine carbamoyltransferase TERM 2620 2149513 - 2149546 + F 89 -9 -4.58424 | gap 1, opp_overlap 2149506 TCTACCAACAGCTAT GAGGGCTGCGACTAA TAGCT TTAGTC-CGGTCCTC TTTTATATAATGGTA arcC 2149645 - 2150592 + | carbamate kinase TERM 2621 2150849 - 2150822 - g 85 -5.6 -5.30575 | opp_overlap 2150822 2150820 2150823, overlap 2150823 GAAAAAGCTAAAAAA GGGTTTAAGATG CCTT CATCTTACACCG TATTATTGATAATCA TERM 2622 2150848 - 2150823 - g 76 -9.1 -3.75905 | opp_overlap 2150823 2150822 2150820, overlap 2150822 AAAAAGCTAAAAAAG GGTTTAAGATG CCTT CATCTTACACC GTATTATTGATAATC SPH_2343 2150801 - 2152312 + | arginine-ornithine antiporter SPH_2344 2152334 - 2153665 + | putative dipeptidase TERM 2623 2153754 - 2153710 - T 81 -10.9 -2.64199 | opp_overlap 2153712, overlap 2153709 GACCGATTAATGAAC TGCACCCCAAAAGTTAGAC AGAATAA ATCTAACTTTTGGGGTGTT TTATTATGAAATTGA TERM 2624 2153712 - 2153752 + T 100 -17.2 -4.78839 | opp_overlap 2153710 2153709 CCGATTAATGAACTG CACCCCAAAAGTTAGA CAGAATAAA TCTAACTTTTGGGGTG TTTTATTATGAAATT SPH_2348 2154615 - 2154349 - | signal peptide, ysirk family protein TERM 2625 2154535 - 2154515 - G 70 -2.5 -5.0917 | overlap 2154516 CCAGCAAAAAATAAA CTCGTTCCT AGC AAGACCGAA CAAGCTCCTATTGCA TERM 2626 2154793 - 2154776 - R 88 -7.7 -5.1167 | opp_overlap 2154776 AACGCAATACAAAAA GAGCCTG TTGC CAAGCTC TTTGTACTCAATGAA TERM 2627 2154890 - 2154908 + r 78 -10.4 -2.61383 | opp_overlap 2154875 2154889, overlap 2154889 GACTGACGAAGTCAG CTCAAAAC ACT GTTTTGAG GTTGTGGATAGAACT TERM 2628 2154979 - 2154967 - R 71 -7.7 -3.58905 | AGGTTGCAGATAGAA CTGAC GAA GTCAG TAACATCTATACGGC SPH_2350 2155943 - 2155044 - | SPFH domain-containing protein/band 7 family protein TERM 2629 2155305 - 2155265 - G 75 -9.8 -3.3785 | gap 1, opp_overlap 2155263 2155265 CCAATCCATCCACAA TCGCCTT-ACGTTGTTGGG CAAT CCCCACACCATGAAGGCGA TCCTTTTCTGCTTCG SPH_2351 2157224 - 2156073 - | NAD-dependent methanol dehydrogenase (medh) fucI 2159136 - 2157370 - | L-fucose isomerase SPH_2353 2162309 - 2159193 - | glycosy hydrolase family protein TERM 2630 2160016 - 2160026 + g 70 -5.4 -4.35348 | GTAGCTACCTTATTT GTAG AGA CTAC TTTATCTTCTGTTAT SPH_2354 2164613 - 2162319 - | large secreted protein TERM 2631 2163001 - 2163023 + g 72 -3.5 -5.0666 | TGGATTTGCCCATTA CTACCTA TTTTTGTTT TAGGTAG TTTCTTTTTTAACTC TERM 2632 2164292 - 2164258 - G 79 -9.4 -3.65529 | overlap 2164283 ATAGCTGTATCTAAA TCTAGCTCTCTTTCAT ACA ATGAAAGAGCACAAGA CTGAATATCTATATG TERM 2633 2164662 - 2164634 - R 100 -13.3 -4.07687 | opp_overlap 2164625 2164632 ACCTCTCTTCCAAAA TGGAGGTGATATC CCA AATACCACCTCCA CACTTTCTACTACTT SPH_2355 2165472 - 2164672 - | mannose permease IID component SPH_2356 2166242 - 2165469 - | phosphotransferase system sugar-specific EII component TERM 2634 2166111 - 2166101 - G 71 -6.8 -4.0342 | CTGAACCAATAAGAA CACC TTG GGTG AAATCTCCTAAGACT SPH_2357 2166735 - 2166256 - | PTS system, IIB component SPH_2358 2167169 - 2166726 - | PTS system, IIA component SPH_2359 2167590 - 2167150 - | fucose operon FucU protein SPH_2360 2168240 - 2167602 - | L-fuculose-1-phosphate aldolase SPH_2361 2169758 - 2168355 - | rhamnulokinase (rhamnulose kinase) TERM 2635 2170031 - 2170003 - g 71 -6.8 -4.10007 | gap 1, overlap 2170005 AGAATTGCCGTAAAA GAGCTGGCAGAAA TCAC TTTCT-CCAGCAC AAGTACCTTACGTCG TERM 2636 2170029 - 2170005 - g 70 -8 -3.64488 | gap 1, overlap 2170003 AATTGCCGTAAAAGA GCTGGCAGAAA TCAC TTTCT-CCAGC ACAAGTACCTTACGT TERM 2637 2170186 - 2170172 - g 79 -5 -5.1101 | opp_overlap 2170184 GTACTAGGCAAAAAA GACTAA TCG CTAGTC TCGCTAAAGACTTTA SPH_2362 2169934 - 2170707 + | regulator of fucose operon SPH_2363 2170980 - 2170852 - | hypothetical protein TERM 2638 2171000 - 2170953 - G 75 -9.4 -3.34029 | opp_overlap 2170958, overlap 2170958 CAAATATTCCCACAA TAAAACGCATAGTATCAAGTTT TTGC ACACCTGATATTATGCGTTTTT CTGATTTTAAAGACT TERM 2639 2170958 - 2170995 + g 90 -9.3 -5.09245 | opp_overlap 2170953 2170958 ATTCCCACAATAAAA CGCATAGTATCAAGTTT TTGC ACACCTGATATTATGCG TTTTTCTGATTTTAA TERM 2640 2170995 - 2170958 - G 89 -9.3 -4.77567 | opp_overlap 2170958, overlap 2170953 ATTCCCACAATAAAA CGCATAGTATCAAGTTT TTGC ACACCTGATATTATGCG TTTTTCTGATTTTAA TERM 2641 2171293 - 2171320 + r 93 -10.7 -3.98159 | opp_overlap 2171293 AGATACGTCAAAAAA GCCCTTAACTA CGGCCA TAGTTAGGGGC TTTGGTGTTCTAATG TERM 2642 2171320 - 2171293 - R 100 -9.2 -5.08169 | opp_overlap 2171293 AGATACGTCAAAAAA GCCCTTAACTAC GGCC ATAGTTAGGGGC TTTGGTGTTCTAATG TERM 2643 2171412 - 2171426 + r 70 -3.6 -4.92783 | TTGATGATCTAAATT TAGTGT GGT ATACTA TTTTTGTCATCGGTT TERM 2644 2171636 - 2171663 + r 93 -10.7 -3.98159 | opp_overlap 2171636 AGATACGTCAAAAAA GCCCTTAACTA TGGCAC TAGTTAGGGGC TTTGGTGTTCTAATG TERM 2645 2171663 - 2171636 - R 95 -8.5 -5.08169 | opp_overlap 2171636 AGATACGTCAAAAAA GCCCTTAACTA TGGCAC TAGTTAGGGGC TTTGGTGTTCTAATG TERM 2646 2171818 - 2171793 - R 100 -10.5 -5.1861 | opp_overlap 2171793 2171794, overlap 2171794 TCTAGTATCAAAAAA CCGACTAGCTC TTAT GAACTAGTCGA TTTCTCATCAATGCG TERM 2647 2171817 - 2171794 - R 91 -11.8 -3.70443 | opp_overlap 2171793 2171794, overlap 2171793 CTAGTATCAAAAAAC CGACTAGCTC TTAT GAACTAGTCG ATTTCTCATCAATGC TERM 2648 2171794 - 2171817 + r 77 -9.6 -2.98447 | opp_overlap 2171794 2171793, overlap 2171793 CTAGTATCAAAAAAC CGACTAGCTC TTAT GAACTAGTCG ATTTCTCATCAATGC SPH_2364 2173331 - 2171826 - | zinc-binding lipoprotein AdcA TERM 2649 2172768 - 2172789 + g 70 -9.5 -2.64666 | overlap 2172767 2172766 AGACAAGCCTTCTGC GTAAGCCTT ATCC AAGGCTTGC AATTTTTCGATATAG TERM 2650 2173060 - 2173071 + g 72 -4.4 -4.70319 | AGCAATTTAGGTACC CATG TTTC CATG TTTTCATTTTCATAA SPH_2365 2174147 - 2173341 - | ABC transporter membrane-spanning permease - Zinc TERM 2651 2173481 - 2173467 - G 77 -6.4 -4.60487 | overlap 2173472 TACCATTCCCAAAAA GCCAAT CGC ACTGGC AAGCAGCATAACCGA SPH_2366 2174844 - 2174140 - | zinc transport system ATP-binding protein AdcC SPH_2367 2175284 - 2174844 - | putative transcriptional repressor TERM 2652 2175164 - 2175147 - GH 73 -8.5 -3.29263 | AGATTCCTCTGACAA GAGCATA AGGA TATGCTC CTGAGTATTGGTCAG SPH_2368 2175269 - 2175406 + | hypothetical protein SPH_2369 2176707 - 2175439 - | D-alanine transfer from undecaprenol-phosphate to the poly dltC 2176939 - 2176700 - | D-alanyl carrier protein SPH_2371 2178197 - 2176953 - | protein DltB TERM 2653 2177063 - 2177081 + g 83 -5.2 -5.1848 | overlap 2177060 TCCAGCGATTCTCAG GTAGGGCA GCC TTCCCTGC TTTTTTCCGTTCCTT TERM 2654 2177089 - 2177104 + g 85 -2.5 -5.7946 | TTCCCTGCTTTTTTC CGTTC CTTATT GAGCG TTTTTTTCTTGCGAA TERM 2655 2177691 - 2177679 - G 70 -7.7 -3.75015 | opp_overlap 2177679, overlap 2177688 ATAATTTTCATTAAA TCGCT TAA AGCGA TCGATTGGACCACTC dltA 2179744 - 2178194 - | D-alanine-activating enzyme SPH_2373 2179896 - 2179765 - | hypothetical protein TERM 2656 2180174 - 2180136 - R 83 -7.6 -4.77165 | CTTCCCATAATAAAA CACACAATATCAAGTTTT TTC AACACCTGATACTATGCG CTTTTCTGATTTTTA SPH_2374 2181115 - 2180210 - | major facilitator superfamily permease TERM 2657 2180278 - 2180266 - G 75 -7.7 -4.10164 | CTATCATCAGACAAA TGGCT GAT AGCCA AAAACTGATGCTAAT TERM 2658 2181650 - 2181633 - R 77 -4.9 -5.1286 | gap 1 TAAAAATCAGAAAAA CGCTCAAA TCC TTTG-GCG CTCTAAGCTTTTCTA SPH_2375 2183118 - 2181841 - | GBSi1, group II intron, maturase TERM 2659 2181891 - 2181915 + g 70 -5.6 -4.34402 | opp_overlap 2181891 2181886 AATCCAAACACGAAA CCAGTCCACG TTTTT CCAGGACTGG TTTTGATATAGCACG TERM 2660 2182726 - 2182761 + g 71 -4.8 -4.62336 | gap 1 CACTATCCACTCATA GCCGTCATTTAAGTACT CTA AGAACTTCA-TGATGGC TTTTTCACATGACCT TERM 2661 2183313 - 2183282 - H 79 -10.3 -2.91264 | opp_overlap 2183283 2183289, overlap 2183289 CTTTCTAGCGACAGA CCTCAAACAGTCT CTCCCC AGACTGTTTGAGT ATTCACCCCTTCGCT TERM 2662 2183283 - 2183312 + H 90 -13.8 -3.04322 | opp_overlap 2183282 2183289, overlap 2183289 TTTCTAGCGACAGAC CTCAAACAGTCT CTCCCC AGACTGTTTGAG TATTCACCCCTTCGC TERM 2663 2183812 - 2183829 + H 93 -9.9 -4.26903 | opp_overlap 2183812 CGTACTAAAAAAAAA CGACGAT TTAA ATCGTCG TTTTGATAAGATAAA TERM 2664 2183829 - 2183812 - H 100 -9.9 -6.15828 | opp_overlap 2183812 CGTACTAAAAAAAAA CGACGAT TTAA ATCGTCG TTTTGATAAGATAAA SPH_2376 2184227 - 2184814 + | hypothetical protein TERM 2665 2184811 - 2184858 + F 100 -21.8 -3.40371 | opp_overlap 2184817 2184823, overlap 2184817 2184823 AACCTACGTGAATTT CTAAAATATAAACCCTGCCT AGATATAA AGGCAGGGTTTATATTTTAG TTAATTGCTCAAGTA TERM 2666 2184817 - 2184852 + F 100 -15 -4.50193 | opp_overlap 2184817 2184823, overlap 2184811 2184823 CGTGAATTTCTAAAA TATAAACCCTGCCT AGATATAA AGGCAGGGTTTATA TTTTAGTTAATTGCT TERM 2667 2184852 - 2184817 - f 100 -15 -4.14392 | opp_overlap 2184817 2184811 2184823, overlap 2184823 CGTGAATTTCTAAAA TATAAACCCTGCCT AGATATAA AGGCAGGGTTTATA TTTTAGTTAATTGCT TERM 2668 2184846 - 2184823 - f 100 -9.6 -4.45168 | opp_overlap 2184823 2184817 2184811, overlap 2184817 TTTCTAAAATATAAA CCCTGCCT AGATATAA AGGCAGGG TTTATATTTTAGTTA TERM 2669 2184823 - 2184846 + F 100 -9.6 -4.50859 | opp_overlap 2184817 2184823, overlap 2184817 2184811 TTTCTAAAATATAAA CCCTGCCT AGATATAA AGGCAGGG TTTATATTTTAGTTA TERM 2670 2185267 - 2185252 - g 74 -9 -3.53224 | opp_overlap 2185241 CATTTTTTGCTGAAA TTGGGC TCTT GCCCAA GCTCTATCAAAATAA SPH_2378 2185206 - 2185322 + | hypothetical protein SPH_2379 2186105 - 2185401 - | glycerol uptake facilitator protein TERM 2671 2186120 - 2186165 + r 93 -3.3 -6.07374 | gap 1, opp_overlap 2186127 2186129 TTTTTCTGTCTCCAT TAAAAAAGG-GGCGGGCGACAA GGA TTGCTACCCTCCACCTGTTTTA TTTTTTATTTTTTCT TERM 2672 2186157 - 2186127 - R 73 -3.8 -5.14563 | opp_overlap 2186120, overlap 2186129 GTCTCCATTAAAAAA GGGGCGGGCGACAA GGA TTGCTACCCTCCAC CTGTTTTATTTTTTA SPH_2380 2188006 - 2186180 - | alpha-glycerophosphate oxidase TERM 2673 2187952 - 2187963 + g 80 -2.2 -5.63103 | overlap 2187947 TCAAGAGGTCCAGGG TGCG TTCC TGCA TTTTTTTAATTGACA glpK 2189556 - 2188048 - | glycerol kinase TERM 2674 2189712 - 2189694 - R 79 -4.5 -5.27923 | GAATTTCACAAAAAA GACCTGG ATTAA CCAAGCC TTTTAAGTGAATAAT SPH_2382 2191124 - 2189715 - | M protein trans-acting positive regulator (MGA) hslO 2191307 - 2192179 + | chaperonin HslO SPH_2384 2192166 - 2193146 + | tRNA-dihydrouridine synthase B TERM 2675 2193192 - 2193237 + T 84 -5.5 -5.40625 | gap 1, opp_overlap 2193192, overlap 2193209 TATTAAATATAAAAA GCGAACAAAATCAGTTATCTGA CAC TCAGAATTCTG-TCTTGTTCGC TTTTTTGTCTAATCT TERM 2676 2193237 - 2193192 - T 89 -7.7 -5.22289 | gap 1, opp_overlap 2193192 2193209 TATTAAATATAAAAA GCGAACAAAATCAGTTATCTGA CAC TCAGAATTCTG-TCTTGTTCGC TTTTTTGTCTAATCT SPH_2385 2194708 - 2193365 - | surface protein PspC TERM 2677 2195424 - 2195477 + H 100 -10.6 -4.52589 | gap 1, overlap 2195426 AATTTGCTACATTAT TTGGCTCTATAATATTTGTAGTGGG TAAAT CCC-CTATGGATATTATGGAGCCTA TTTTGTGTAGAAAAA TERM 2678 2195426 - 2195475 + H 95 -13.2 -3.87627 | gap 1, overlap 2195424 TTTGCTACATTATTT GGCTCTATAATATTTGTAGTGGG TAAAT CCC-CTATGGATATTATGGAGCC TATTTTGTGTAGAAA TERM 2679 2196406 - 2196387 - g 70 -9.4 -2.64981 | opp_overlap 2196385 ATAGTCGTAAACTCA GCGATAAA CATT TTTATCGC CCTACTTTTCGTATG TERM 2680 2196795 - 2196773 - g 100 -13.6 -5.27779 | opp_overlap 2196777 CTGAATATCAAAAAA GAAAGGACAA AAT TTGTCCTTTC TCGAGCTTAGCTGAC TERM 2681 2196777 - 2196791 + G 77 -8.6 -3.89614 | opp_overlap 2196773 ATATCAAAAAAGAAA GGACAA AAT TTGTCC TTTCTCGAGCTTAGC SPH_2387 2195549 - 2196805 + | transposase TERM 2682 2196843 - 2196892 + T 84 -5.9 -5.21709 | opp_overlap 2196846, overlap 2196846 GACAAAGAGCCAAAA AAACTCCGTAGTCTCTAGC GCTATAAATCCG GCTAGAGATTACAGAGTTA TTTTTTAATCTAAAC TERM 2683 2196846 - 2196889 + T 83 -7.6 -4.69962 | opp_overlap 2196846, overlap 2196843 AAAGAGCCAAAAAAA CTCCGTAGTCTCTAGC GCTATAAATCCG GCTAGAGATTACAGAG TTATTTTTTAATCTA TERM 2684 2196889 - 2196846 - T 93 -7.6 -5.54264 | opp_overlap 2196843 2196846 AAAGAGCCAAAAAAA CTCCGTAGTCTCTAGC GCTATAAATCCG GCTAGAGATTACAGAG TTATTTTTTAATCTA SPH_2388 2199110 - 2197008 - | surface protein PspC SPH_2389 2199716 - 2199189 - | hypothetical protein SPH_2390 2201130 - 2199799 - | histidine kinase SPH_2391 2201780 - 2201127 - | response regulator SPH_2392 2201833 - 2202030 + | hypothetical protein SPH_2393 2204533 - 2202101 - | chaperone ClpB 1 SPH_2394 2204993 - 2204535 - | transcriptional regulator CtsR TERM 2685 2205069 - 2205106 + r 71 -3.3 -5.02439 | opp_overlap 2205071, overlap 2205071 CATTTTTAAAAGAAA AAGGGCGCTGGTAAAGG ATAA TCTTCACCAACTCCCTA TTTTTCTACTTATCT TERM 2686 2205104 - 2205071 - R 100 -9.6 -5.45802 | opp_overlap 2205069 2205071 TTTTTAAAAGAAAAA GGGCGCTGGTAAAG GATAAT CTTCACCAACTCCC TATTTTTCTACTTAT SPH_2395 2205840 - 2205112 - | ABC transporter ATP-binding protein - anion transport SPH_2396 2206847 - 2205840 - | ABC transporter substrate-binding protein TERM 2687 2206001 - 2206016 + g 71 -4 -4.90013 | gap 1, overlap 2206004 AGTATTTTTGAGATT CGATGAC AAA GTCA-CG TTTTTCCTTGAGTTC SPH_2397 2207647 - 2206886 - | ABC transporter, permease protein SPH_2398 2207897 - 2207607 - | hypothetical protein TERM 2688 2207961 - 2207940 - R 100 -7.3 -5.94743 | opp_overlap 2207914 TAAAAAAAAGAAAAA CCTTTACCA TACA TGGAAAAGG TACAAAATTAGACTA TERM 2689 2208145 - 2208124 - R 80 -7.3 -4.52857 | ACTGCTTACAGAAAA GAGCAGGAA ATTT CTCCTACTC CAATTTTCTATACTC SPH_2399 2209499 - 2208153 - | choline binding protein D TERM 2690 2209472 - 2209429 - G 78 -4.1 -5.1861 | gap 1, opp_overlap 2209455 CCTACTACTAAAAAA GGAACAAGCTTTTTAACTGA CATCT TCAAGTAATAA-CTTGTTCC TCTTGCTATAAACGG TERM 2691 2209586 - 2209570 - R 100 -9.5 -5.8096 | opp_overlap 2209570 GAGAAAAAAGAAAAA GTGAGAA AAT TTCTCAC TTTAGTCAAGATAAT TERM 2692 2209570 - 2209586 + r 81 -9.5 -3.73953 | opp_overlap 2209570 GAGAAAAAAGAAAAA GTGAGAA AAT TTCTCAC TTTAGTCAAGATAAT SPH_2400 2209854 - 2209588 - | hypothetical protein dnaB 2211208 - 2209856 - | replicative DNA helicase rplI 2211704 - 2211252 - | ribosomal protein L9 TERM 2693 2213793 - 2213767 - R 79 -4.6 -5.24416 | gap 1, opp_overlap 2213767 CAATTATAAGAAAAA GGTAG-TTTAC AATTCA GTAAACCTACC TTTACACATATTGAA SPH_2404 2214358 - 2213810 - | ribosome-associated protein Y SPH_2405 2215100 - 2214438 - | involved in transformation SPH_2406 2216395 - 2215097 - | superfamily II ATP-dependent DNA/RNA helicase TERM 2694 2215917 - 2215905 - G 72 -3.3 -5.06816 | overlap 2215906 ATTCCGCAAGAAAAA TCCTG TTG CAGGC GCTTGTACAGCTCCA SPH_2407 2216451 - 2217086 + | hypothetical protein TERM 2695 2217112 - 2217100 - f 71 -7.7 -3.53745 | overlap 2217098 AAACAATGAATAATA CAACG TTT CGTTG ACATTCTCACAACTA TERM 2696 2217311 - 2217277 - f 100 -20.4 -2.80816 | opp_overlap 2217277 2217285, overlap 2217279 2217281 2217285 CTTTGATCTATGATA TATAGAAATCCTATCG CTT CGATAGGATTTCTATA TTTTACAAATGGTAT TERM 2697 2217277 - 2217311 + F 100 -20.4 -4.12456 | opp_overlap 2217277 2217279 2217281 2217285, overlap 2217285 CTTTGATCTATGATA TATAGAAATCCTATCG CTT CGATAGGATTTCTATA TTTTACAAATGGTAT TERM 2698 2217309 - 2217279 - f 100 -18.6 -2.95298 | opp_overlap 2217277 2217285, overlap 2217277 2217281 2217285 TTGATCTATGATATA TAGAAATCCTATCG CTT CGATAGGATTTCTA TATTTTACAAATGGT TERM 2699 2217307 - 2217281 - f 100 -16.8 -3.02947 | opp_overlap 2217277 2217285, overlap 2217279 2217277 2217285 GATCTATGATATATA GAAATCCTATCG CTT CGATAGGATTTC TATATTTTACAAATG TERM 2700 2217303 - 2217285 - f 100 -11.8 -4.18367 | opp_overlap 2217277 2217285, overlap 2217281 2217279 2217277 TATGATATATAGAAA TCCTATCG CTT CGATAGGA TTTCTATATTTTACA TERM 2701 2217285 - 2217303 + F 100 -11.8 -4.33956 | opp_overlap 2217285 2217281 2217279 2217277, overlap 2217277 TATGATATATAGAAA TCCTATCG CTT CGATAGGA TTTCTATATTTTACA cysK 2217371 - 2218297 + | cysteine synthase A TERM 2702 2218315 - 2218330 + T 88 -6.1 -5.63236 | TCCTAAATACAATTG GCCCT TATTAT AGGGC TTTTTATTTTTACCT TERM 2703 2218392 - 2218408 + T 100 -10.9 -4.36774 | opp_overlap 2218392 ACTGCATACAAAAAA GGAAGCA ATT TGCTTCC TTTCTATTATTAGTT TERM 2704 2218408 - 2218392 - T 100 -10.9 -5.37043 | opp_overlap 2218392 ACTGCATACAAAAAA GGAAGCA ATT TGCTTCC TTTCTATTATTAGTT tsf 2219458 - 2218418 - | translation elongation factor Ts TERM 2705 2219515 - 2219485 - R 100 -17.6 -4.09243 | opp_overlap 2219483 2219480 TATATTTTTTGAAAA TAGGAGAGCCGGGC TAA GCCCCGCCCTCCTA GGTAATTACTATTTG rpsB 2220316 - 2219537 - | ribosomal protein S2 TERM 2706 2219770 - 2219782 + g 76 -3.3 -5.23016 | opp_overlap 2219770 2219771, overlap 2219771 CAACCATCGCTACAA CTGGG ATT CCCAA TTTTTTAGCTTCTTT TERM 2707 2219908 - 2219920 + g 71 -6.3 -4.15044 | CACGTTGTTTGTTAA GAAGT GCA ACTTC TTTCTTAGGAAGAAC TERM 2708 2220075 - 2220091 + g 71 -6.5 -4.24413 | opp_overlap 2220064 CGTACTGCTTCTTCA GCAACTG CAT CAGCTGC TTGTTTCTTAGTACC TERM 2709 2220533 - 2220512 - R 74 -6.6 -4.28049 | gap 1, opp_overlap 2220510 2220514 GGTAAAACCTGAAAA GAGGG-CTC TATTC GAGTCCCTC TGTAAATTAATCTGC SPH_2411 2221718 - 2220540 - | general stress protein GSP-781 TERM 2710 2221024 - 2221055 + g 74 -5 -4.82667 | gap 1, opp_overlap 2221009 GCTGCTTCTGCTACC GCAGCTGCACGAGCC TCT GCCTCA-GCTGCTGC TTTTTGCTCTAATAG TERM 2711 2221788 - 2221769 - R 86 -5 -5.59357 | opp_overlap 2221769 AGTATACCAAAAAAA GGCCTAAT AAAT ATTACGCC TTTGTTACATTTATA mreD 2222305 - 2221799 - | rod shape-determining protein MreD mreC 2223123 - 2222305 - | rod shape-determining protein MreC TERM 2712 2222633 - 2222649 + g 71 -6.6 -4.08767 | opp_overlap 2222633 AGAAGGTTGACTATA GTAGAG TTCTC CTCTAC TTTTGAAACACTCCC TERM 2713 2223148 - 2223158 + r 70 -4 -4.92314 | opp_overlap 2223148 TTTATATCAAAAACT GTTA CAG TAAC TTTTTATCAATTCCT SPH_2414 2223976 - 2223182 - | ABC transporter permease protein TERM 2714 2223719 - 2223703 - G 71 -3.7 -4.97824 | overlap 2223705 AAAACTCAAATAAAA CATTCCC ATT AGAAATG AAAAATAGTTGAAAA SPH_2416 2225619 - 2224792 - | cobalt import ATP-binding protein CbiO 2 pgsA 2226161 - 2225616 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase SPH_2418 2226993 - 2226172 - | hypothetical protein SPH_2419 2228318 - 2227035 - | M16 family peptidase TERM 2715 2227576 - 2227602 + g 74 -5.2 -4.71186 | ATTCTCATACTATCT GTTGGCTTTACA GGC TGTAAAAACAAC TTTTCTCTTGCTACT TERM 2716 2227628 - 2227640 + g 71 -6.3 -4.15396 | opp_overlap 2227628 2227627 CTACTTCCTGAAAAT CTGAA TCT TTCAG TTCTTTGCTTTCAAA SPH_2420 2229565 - 2228315 - | M16 family peptidase TERM 2717 2228671 - 2228658 - G 71 -5.3 -4.5123 | AATCCACTAAATAAA TCAAG CTCA CTTGA AATGGTATAAGCTAA TERM 2718 2229014 - 2228999 - G 77 -6.2 -4.58663 | ATCATTGGCTAAAAA TTCTTG GAAA CAAGAA TAAGAACTTTGTGGA TERM 2719 2229506 - 2229518 + g 75 -2.7 -5.28481 | ACGCACGGTAATTTT GTTTG TTT TAAAC TTTTTTGATTGGATA SPH_2421 2229724 - 2230092 + | S4 domain-containing protein YaaA SPH_2422 2230095 - 2231192 + | DNA replication and repair protein RecF TERM 2720 2231238 - 2231196 - T 81 -10.1 -3.48465 | gap 1, opp_overlap 2231196 2231199, overlap 2231199 2231206 2231209 AATGGAAATTGACAA CATTGTAAAAGAACTCCTGT TTTC ACTGGAGTTCTTTT-CATTG TTTTTTACATAGAAT TERM 2721 2231196 - 2231238 + T 100 -10.1 -5.09225 | gap 1, opp_overlap 2231196 2231199 2231206 2231209, overlap 2231199 AATGGAAATTGACAA CATTGTAAAAGAACTCCTGT TTTC ACTGGAGTTCTTTT-CATTG TTTTTTACATAGAAT TERM 2722 2231235 - 2231199 - T 77 -10.4 -2.57996 | gap 1, opp_overlap 2231196 2231199, overlap 2231196 2231206 2231209 GGAAATTGACAACAT TGTAAAAGAACTCCTGT TTTC ACTGGAGTTCTTTT-CA TTGTTTTTTACATAG TERM 2723 2231199 - 2231235 + T 100 -10.4 -4.64763 | gap 1, opp_overlap 2231199 2231196 2231206 2231209, overlap 2231196 GGAAATTGACAACAT TGTAAAAGAACTCCTGT TTTC ACTGGAGTTCTTTT-CA TTGTTTTTTACATAG TERM 2724 2231229 - 2231206 - T 93 -9.6 -4.20712 | opp_overlap 2231199 2231196, overlap 2231199 2231196 2231209 GACAACATTGTAAAA GAACTCCTGT TTTC ACTGGAGTTC TTTTCATTGTTTTTT guaB 2232721 - 2231243 - | inosine-5'-monophosphate dehydrogenase TERM 2725 2232295 - 2232285 - G 70 -3.2 -4.90525 | TAATCTGAAATAAAA CGAA GAT CTCG GTTTGTCAAAATACC TERM 2726 2232855 - 2232827 - R 86 -4.7 -5.63517 | opp_overlap 2232827 GGGGTAAATAAAAAA CTATCTTTTCT TCGAGAT AGAAATGATAG TTTCTTGTAAAATAA trpS 2233898 - 2232873 - | tryptophanyl-tRNA synthetase SPH_2425 2234104 - 2235726 + | ABC transporter ATPase TERM 2727 2235771 - 2235733 - f 81 -6.1 -5.00923 | opp_overlap 2235736 2235741, overlap 2235741 AAAGACTAAATAAAA CTTCAAAACTCAGTTGG GTTAA CCAACTGAGTTTTCTAT CATTCTACGAGGTAA TERM 2728 2235736 - 2235768 + F 85 -12.2 -2.96274 | opp_overlap 2235733 2235741, overlap 2235741 GACTAAATAAAACTT CAAAACTCAGTTGG GTTAA CCAACTGAGTTTTC TATCATTCTACGAGG TERM 2729 2235741 - 2235763 + F 100 -12.1 -4.63007 | opp_overlap 2235733 2235741, overlap 2235736 AATAAAACTTCAAAA CTCAGTTGG GTTAA CCAACTGAG TTTTCTATCATTCTA TERM 2730 2235763 - 2235741 - f 100 -12.1 -4.30559 | opp_overlap 2235741 2235736, overlap 2235733 AATAAAACTTCAAAA CTCAGTTGG GTTAA CCAACTGAG TTTTCTATCATTCTA SPH_2426 2235788 - 2238340 + | ABC transporter, permease component TERM 2731 2238364 - 2238345 - f 82 -5.7 -5.31456 | opp_overlap 2238338 2238345 CTAAGGCATAAAAAA TCGACCA GTTAAT CGGTCGA TTTTTTTAATCTTCT TERM 2732 2238345 - 2238364 + F 86 -5 -5.6473 | opp_overlap 2238345, overlap 2238338 CTAAGGCATAAAAAA TCGACC AGTTAATC GGTCGA TTTTTTTAATCTTCT TERM 2733 2239621 - 2239610 - f 77 -3 -5.5208 | opp_overlap 2239617, overlap 2239603 TTACAAGATAAAAAA TCTA TTTT TAGA CATATAGTCTAATTT TERM 2734 2239788 - 2239768 - g 74 -4.7 -4.95806 | opp_overlap 2239768 AAATTAGTAGAAAAA GCCGGAA TTAGTCG TTCCAGC TTCTATACTCACTAT SPH_2429 2239654 - 2240196 + | TetR family transcriptional regulator TERM 2735 2240225 - 2240205 - T 81 -6.2 -5.01546 | gap 1, opp_overlap 2240206 2240207, overlap 2240207 AAATTGATACAAAAA GAGGAACAC AGCT GTGTTCC-C TTTTATCTATACTCC TERM 2736 2240206 - 2240225 + T 76 -6.4 -4.62984 | opp_overlap 2240205 2240207, overlap 2240207 AATTGATACAAAAAG AGGAACAC AGCT GTGTTCCC TTTTATCTATACTCC TERM 2737 2240224 - 2240207 - T 93 -9.9 -4.11744 | opp_overlap 2240206 2240207, overlap 2240205 ATTGATACAAAAAGA GGAACAC AGCT GTGTTCC CTTTTATCTATACTC TERM 2738 2240207 - 2240224 + T 81 -9.9 -3.37067 | opp_overlap 2240207 2240205, overlap 2240206 ATTGATACAAAAAGA GGAACAC AGCT GTGTTCC CTTTTATCTATACTC SPH_2432 2241191 - 2240439 - | response regulator TERM 2739 2240516 - 2240535 + g 72 -3.6 -5.10497 | opp_overlap 2240509, overlap 2240518 GACAACGATGGTCTT CATAGAAA ACAA TTTCTAAG TTTTTTCGATCAATT SPH_2433 2242513 - 2241188 - | ComD SPH_2434 2242659 - 2242534 - | hypothetical protein TERM 2740 2242810 - 2242793 - H 100 -9.1 -5.4505 | opp_overlap 2242793 TTTTTTAAGAAAAAA GCCGGGA AAAT TCCCAGC TTTGCTATTATATTG TERM 2741 2242793 - 2242810 + H 73 -6.9 -4.00882 | opp_overlap 2242793 TTTTTTAAGAAAAAA GCCGGGA AAAT TCCCAGC TTTGCTATTATATTG TERM 2742 2243173 - 2243159 - H 70 -7.2 -3.737 | opp_overlap 2243158, overlap 2243171 TAACTGCTTACTAAA TTCTTC TGA GAAGAA AGTTTTCCCTTCAAT TERM 2743 2243633 - 2243618 - g 74 -4.8 -4.77986 | opp_overlap 2243618 TGAAACATCTAAAAA CATTTT ACAA AAAATG GTTTCAATTATTAGT SPH_2438 2243602 - 2244783 + | trypsin domain-containing protein TERM 2744 2244917 - 2244885 - g 88 -4.2 -5.77988 | AGATATACAAAAAAA TCCCTATCAACCCC GAAAA GAATTTGATAGAGA AAAACTAGATGAACT TERM 2745 2244934 - 2244922 - g 72 -3.4 -5.03994 | TTTGATAGAGAAAAA CTAG ATGAA CTAG CACAGTCTATCAAAG SPH_2439 2244841 - 2245599 + | stage 0 sporulation protein J