TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.606379 %AT, 1583686 nt, 10466 terms. Intergenic: 0.652533 %AT, H2T: 269568 nt, 1973 terms; T2T: 49441 nt, 1060 terms; H2H: 58536 nt, 761 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|21909536|ref|NC_004070.1| Streptococcus pyogenes MGAS315, complete genome (length 1900521) TERM 1 1362 - 1342 - g 73 -6.9 -4.14392 | GCGCAAGTTGGAAAA TTTTACGGT GTT ACCGTCAAA GAAATTAAAGCTACT dnaA 232 - 1587 + | chromosomal replication initiation protein TERM 2 1642 - 1616 - f 73 -7.4 -3.73402 | overlap 1618 ATATCTTTTATGAAA TAGTTATCCACA AGT TGTGAACAACCA TTTAGTCTTGGATTC TERM 3 1877 - 1848 - g 90 -8.7 -5.1356 | opp_overlap 1853 TTTCATCAATAAAAA TTGAAGTCACTCC TACA GGAGTAACTTTAA CAGGGTCTAACGGTC TERM 4 2180 - 2190 + G 71 -6.8 -4.0896 | TTGAAGTCTATTATT GCTG AAA CAGC TTTTGCAGCCAGTTT dnaN 1742 - 2878 + | DNA polymerase III subunit beta TERM 5 2890 - 2903 + F 93 -3.8 -5.97979 | opp_overlap 2890 CTAAGTAAGAAAAAG CTCC CTTTTA GGAG TTTTTTTGTTATTAT SpyM3_0003 2953 - 3150 + | hypothetical protein SpyM3_0004 3480 - 4595 + | translation-associated GTPase TERM 6 5154 - 5180 + G 90 -8.8 -4.86731 | GCTATTTCGTTAACT CTTGACAGAGTT GTC AATGCTGTCAAG TTTTATTTACAAGAA pth 4665 - 5234 + | peptidyl-tRNA hydrolase TERM 7 6229 - 6215 - g 70 -8.6 -3.29626 | GAAGATTTACAGCAA GGAAAG GCT CTTTCC AATCTTAACTACTTT TERM 8 7292 - 7273 - g 70 -5.8 -4.32034 | overlap 7274 GCAGCATTATGAAAA CTTCAAAG CACG CTTTGAAA ATTACCCTGTTGAGG TERM 9 7532 - 7509 - g 70 -3.2 -4.95957 | overlap 7510 TAAAGGAATTAAAAA CTAAGGTTGA CGTC TTAACCTTAA CAGCTACTCCGATTC TERM 10 7890 - 7914 + G 72 -4.3 -4.67607 | opp_overlap 7892, overlap 7892 CGATCATCGAAACAG GAGTTGACATT TCT AATGTAAACAC TTTGTTTATTGAGAA trcF 5321 - 8740 + | putative transcription-repair coupling factor SpyM3_0007 8902 - 9174 + | hypothetical protein TERM 11 9357 - 9331 - g 76 -11.1 -2.74605 | opp_overlap 9329 TCTTGTCAAAAGTTA TGTTGATTTTG AAAAG CAAAATCAACA GGTGGTTAAATTAAA divIC 9161 - 9532 + | putative cell division protein TERM 12 10157 - 10132 - g 79 -6.9 -4.57569 | TCATTTGCTCAAAAA GTTCATGCCAC TCAA ATGGCACAAAC AAACCATGGAACTTA SpyM3_0009 9667 - 10953 + | hypothetical protein TERM 13 11001 - 10988 - f 84 -3.9 -5.72053 | TAATGAAATAAAAAA TAAAG CCTA CTTTA AAAATCATAGACATG TERM 14 11035 - 11063 + F 81 -6.1 -4.92363 | TAATAGCCGTATCTG GTGGAGTAGATTC AAT GAATTTATTGCAC TTTTTATACCTGTTT mesJ 11049 - 12236 + | putative cell-cycle protein hpt 12241 - 12783 + | hypoxanthine-guanine phosphoribosyltransferase TERM 15 13954 - 13924 - g 77 -4.8 -4.87389 | CATGCTAAAAATAAA CCACTTGCAAATGA CGT TAATTTGAAAGTAG TAGCCCAACAGACTC ftsH 12805 - 14784 + | putative cell division protein TERM 16 14831 - 14782 - f 95 -14.8 -3.33261 | gap 1, opp_overlap 14794, overlap 14794 TCTGAATCTGCAGAA TG-AGATAAAAAAGCTGAACTTA TAGAT TAAGTTCAGCTTTTTTATCAACA CAATATCCTTGTAAA TERM 17 14794 - 14818 + F 100 -11.6 -5.24129 | opp_overlap 14782 14794 GAATGAGATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA TERM 18 14818 - 14794 - f 100 -11.6 -5.42131 | opp_overlap 14794, overlap 14782 GAATGAGATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA SpyM3_0013 15110 - 16501 + | putative amino acid permease TERM 19 16616 - 16644 + F 90 -11.8 -3.40371 | opp_overlap 16611 16609 TTTAAAATTACCCAC CCCCTAGAGAAT TGATT AGTCTCTAGGGG TTGATTGGTACAATG TERM 20 17040 - 17026 - f 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 21 19324 - 19305 - f 91 -12.2 -3.62096 | opp_overlap 19304 19303 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 22 20016 - 19983 - f 71 -8.9 -3.03412 | overlap 19982 20005 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 23 23042 - 23028 - f 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 24 25326 - 25307 - f 91 -12.2 -3.62096 | opp_overlap 25306 25305 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 25 26018 - 25985 - f 71 -8.9 -3.03412 | overlap 25984 26007 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 26 29767 - 29779 + F 95 -5.5 -6.50115 | opp_overlap 29767 ATAAAGGGGAAAGAA GACGG TTA TCGTC TTTTTTTTTTGTAAT SpyM3_0014 31195 - 32391 + | putative secreted protein TERM 27 32403 - 32424 + F 100 -11.7 -5.00339 | opp_overlap 32399 CTAACATATTATTTA GGTTAGAAC AGTT GTTCTAACC TTTTTGATTATTCCT prsA 32644 - 33606 + | ribose-phosphate pyrophosphokinase TERM 28 33617 - 33639 + F 100 -9.9 -4.75174 | opp_overlap 33617 ATTAAACTTAACGAA GCCTGAGAT AATAG ATCTCGGGC TTTTTGACTTGAATA recO 33792 - 34547 + | DNA repair protein RecO plsX 34650 - 35657 + | putative glycerol-3-phosphate acyltransferase PlsX acpP.1 35650 - 35892 + | acyl carrier protein TERM 29 35896 - 35931 + F 100 -18 -3.53091 | opp_overlap 35899 35902 35908, overlap 35899 35902 35908 CGTTTGACTTAGTTA GAATAATAAAAAGAGC GTAA GCTCTTTTTATTATTC TTTAAAAACGAACCT TERM 30 35899 - 35928 + F 100 -13.9 -3.90744 | opp_overlap 35899 35902 35908, overlap 35896 35902 35908 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 31 35928 - 35899 - f 95 -13.9 -3.36878 | opp_overlap 35899 35896 35902 35908, overlap 35902 35908 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 32 35925 - 35902 - f 90 -11.2 -3.82378 | opp_overlap 35902 35899 35896 35908, overlap 35899 35908 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 33 35902 - 35925 + F 93 -11.2 -4.08557 | opp_overlap 35899 35902 35908, overlap 35899 35896 35908 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 34 35908 - 35919 + F 86 -5.8 -5.40014 | opp_overlap 35902 35899 35908, overlap 35902 35899 35896 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT TERM 35 35919 - 35908 - f 84 -5.8 -5.34365 | opp_overlap 35908 35902 35899 35896, overlap 35902 35899 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT purC 36044 - 36748 + | phosphoribosylaminoimidazole-succinocarboxamide synthase purL 36942 - 40598 + | putative phosphoribosylformylglycinamidine synthase II purF 40832 - 42286 + | amidophosphoribosyltransferase TERM 36 42413 - 42392 - g 90 -3.8 -6.01369 | gap 1 GAAAGAATAAAAAAA CACGTTGCT CGTAC AG-AACGTG CGGGAGTCATGGGAG purM 42314 - 43336 + | phosphoribosylaminoimidazole synthetase TERM 37 43389 - 43361 - f 73 -9 -3.15008 | overlap 43359 TTTTATAAGAAAGGA GTGTTTAGTTAG TTTGC CTAACTGAACAC GGGATTAAATTTCTA purN 43504 - 44058 + | phosphoribosylglycinamide formyltransferase TERM 38 44665 - 44652 - g 79 -6.7 -4.58395 | CTCAGCCGCTAAAAA TCACG CTAG CGTGA CCGTTGTGGTTGACC TERM 39 45756 - 45742 - g 74 -6.4 -4.42062 | opp_overlap 45741, overlap 45738 GACGCCGCAAACAAA CATGGC TTG ACCATG ATCTTCACAGGTGTG purH 44242 - 45789 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 40 45798 - 45818 + T 90 -4 -5.7946 | opp_overlap 45798 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTTATTAAAAG TERM 41 45818 - 45798 - T 93 -6.2 -5.84381 | opp_overlap 45798 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTTATTAAAAG SpyM3_0025 46972 - 45848 - | putative choline binding protein TERM 42 46634 - 46657 + g 70 -9 -3.26444 | gap 1, opp_overlap 46634, overlap 46632 46630 AGCGTTTTTATCAAA CCAAGCGATAG CCC CTAT-GCTTGG TGTCTTATTCACAGG TERM 43 46657 - 46634 - G 76 -9 -3.72695 | gap 1, opp_overlap 46634 46632 46630 AGCGTTTTTATCAAA CCAAGCGATAG CCC CTAT-GCTTGG TGTCTTATTCACAGG TERM 44 47797 - 47820 + G 73 -6.7 -4.27441 | GAGGAATTCTTGGAT GGCGAGGAG TTTTCC CTCTTTGCC TTTGTTAATGGTGAT purD 47218 - 48492 + | phosphoribosylamine--glycine ligase TERM 45 48539 - 48527 - f 79 -9.1 -3.40073 | AGCGTCAGCAATCAA CGACC GAA GGTCG CTCCAAAAAGAAAGA purE 48650 - 49261 + | phosphoribosylaminoimidazole carboxylase catalytic subunit purK 49302 - 50321 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 46 51316 - 51292 - g 79 -5.2 -5.08088 | gap 1, opp_overlap 51275 51283 51292 AATTTTGAAGAAAAA TTCTGCTATTT TAGT AAAT-GCAGAA TTTAATGAGAGCCGA SpyM3_0029 50342 - 51682 + | hypothetical protein TERM 47 51965 - 51947 - f 70 -8.1 -3.30701 | opp_overlap 51946 51947, overlap 51923 51942 TTTCACTAAACTGAA CCCGAGC GGAAA GCTCGGA ATTTAGATAAACCGC purB 52051 - 53343 + | adenylosuccinate lyase TERM 48 53370 - 53355 - f 93 -4.7 -6.10295 | opp_overlap 53348 53355 53368, overlap 53344 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA TERM 49 53355 - 53370 + F 86 -4.7 -5.63517 | opp_overlap 53355 53344, overlap 53348 53368 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA SpyM3_0031 53474 - 54385 + | hypothetical protein TERM 50 54396 - 54413 + F 72 -4.9 -4.73432 | overlap 54398 TTTAAATAATAATTT TATGACA TGGA TGTCATG TTTATTTATATTTAC ruvB 54605 - 55603 + | Holliday junction DNA helicase B TERM 51 56026 - 56016 - g 75 -5.4 -4.6902 | overlap 56025 CGATAATGTGAAAAA TCTC AAA GAGA TGTCGCAACATCAAT SpyM3_0033 55741 - 56178 + | putative protein-tyrosine phosphatase SpyM3_0034 56201 - 56602 + | hypothetical protein TERM 52 56774 - 56786 + G 71 -4.1 -5.00616 | overlap 56775 CAAAAAAAGAGTCTA TCGAT ATT ATCGG TTTTTTAAAAAGACG TERM 53 57578 - 57592 + G 70 -2.8 -5.11836 | overlap 57580 TGTCTCATATTTTGG CAGTTA TTC TAACAG TTTTCTTTTCAATCT SpyM3_0035 56599 - 58374 + | putative acyltransferase TERM 54 58601 - 58581 - f 83 -4.8 -5.48303 | opp_overlap 58581, overlap 58582 ATAATTTGAAAAAAA CTTCACAA ATTTA TTGTGAAA TGATTTACAAAATTT adh2 58683 - 61325 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 55 61349 - 61380 + F 100 -12.6 -5.19275 | opp_overlap 61349 GTTGATACCAGGAAA TGATTTCTTATGAT TAAA GTCATAAGAAATCA TTTTATTTTCTAAAT TERM 56 61380 - 61349 - f 91 -11.9 -3.81951 | opp_overlap 61349 GTTGATACCAGGAAA TGATTTCTTATGA TTAAAG TCATAAGAAATCA TTTTATTTTCTAAAT TERM 57 61480 - 61500 + F 79 -9.1 -3.3447 | opp_overlap 61468, overlap 61476 TAACCGGTTAAGTTT CAGAAACTT TTC AGGTTTCTG TTGACTTTCATTGTG adh1 61578 - 62594 + | alcohol dehydrogenase TERM 58 62705 - 62651 - f 91 -11.9 -3.61371 | gap 2, opp_overlap 62656, overlap 62656 AAACTTGATTCCAAA TAAAATAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTATTTTG ATACATTGAAAGTTG TERM 59 62656 - 62700 + F 100 -14 -4.30978 | gap 2, opp_overlap 62651 62656 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTG--ACTCGAGAGTGCTA TTTTGATACATTGAA TERM 60 62700 - 62656 - f 100 -11.8 -4.88918 | gap 2, opp_overlap 62656, overlap 62651 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTA TTTTGATACATTGAA SpyM3_0038 62982 - 64271 + | multi antimicrobial extrusion (MATE) family transporter TERM 61 64258 - 64279 + F 86 -5.9 -5.40072 | opp_overlap 64259, overlap 64259 AAAAGTACCAAGAAA TTACCTTTC ATTA GGAAGGTAG TTTTTTTGAAAAAAA TERM 62 64259 - 64278 + F 70 -7.2 -3.83561 | opp_overlap 64259, overlap 64258 AAAGTACCAAGAAAT TACCTTTC ATTA GGAAGGTA GTTTTTTTGAAAAAA TERM 63 64344 - 64359 + F 71 -7.6 -3.58343 | TTATTATATTGTGGT GCTGTA AAAA TACAGC TTTAGCAATGATACA rpsJ 64470 - 64778 + | 30S ribosomal protein S10 TERM 64 64882 - 64892 + F 79 -4 -5.49568 | CAGAAGTTTTTGTGT TAGA TTT TCTA TTTTTATTTTGAGTT TERM 65 64967 - 64943 - f 70 -2.1 -5.32882 | overlap 64944 64956 64957 TATGAGCACAAAAAA CGCTCGTAAAA AAC TTTTTTGAGCA CAAAAAACGCTCATA TERM 66 65596 - 65568 - g 70 -5.4 -4.40358 | gap 1, overlap 65571 65587 AGTTATCCCAGAAAA GAACGTTATCCTT GTTA AAGG-TAACGTAC CAGGTGCTAAGAAAT TERM 67 65593 - 65571 - g 70 -5.7 -4.32067 | gap 1, overlap 65568 65587 TATCCCAGAAAAGAA CGTTATCCTT GTTA AAGG-TAACG TACCAGGTGCTAAGA rplC 65026 - 65652 + | 50S ribosomal protein L3 rplD 65676 - 66299 + | 50S ribosomal protein L4 TERM 68 66339 - 66326 - g 76 -3.1 -5.28481 | opp_overlap 66333, overlap 66327 GACGTAATCAAAAAA CCAGT TATC ACTGA GAAGTCAATGATTGC rplW 66299 - 66595 + | 50S ribosomal protein L23 rplB 66613 - 67446 + | 50S ribosomal protein L2 TERM 69 67690 - 67672 - g 84 -2.4 -5.83211 | GACGAAAAGAAAAAA GTAATCAA AAC TTGGTCAC GTCGTTCAACGATTT rpsS 67585 - 67863 + | 30S ribosomal protein S19 TERM 70 67921 - 67943 + G 79 -9.2 -3.86106 | overlap 67912 ATGGCTCGTACAGTG CGTGTTTCAC CTC GTAAAACACG TTTAGTACTTGATCT rplV 67879 - 68223 + | 50S ribosomal protein L22 rpsC 68236 - 68889 + | 30S ribosomal protein S3 rplP 68893 - 69306 + | 50S ribosomal protein L16 rpmC 69316 - 69522 + | 50S ribosomal protein L29 rpsQ 69548 - 69808 + | 30S ribosomal protein S17 rplN 69833 - 70201 + | 50S ribosomal protein L14 rplX 70280 - 70585 + | 50S ribosomal protein L24 TERM 71 70581 - 70565 - f 70 -2.2 -5.21709 | opp_overlap 70565 CGTTACAGCAAAAAA TCAGGC GAAGT GCTTGA TTAATCACGAAGGAA rplE 70609 - 71151 + | 50S ribosomal protein L5 TERM 72 71258 - 71245 - g 79 -6.7 -4.56775 | opp_overlap 71245 ACTCGCTGTGAAAAA TGTGG ACGT CCACA TTCAGTTTACCGCAA rpsN 71167 - 71352 + | 30S ribosomal protein S14 TERM 73 71361 - 71397 + F 78 -10.4 -2.60194 | opp_overlap 71356 71361 71363 71368, overlap 71360 71363 71366 71368 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG CTTAATTAAAACGGT TERM 74 71397 - 71361 - f 80 -10.4 -3.01831 | opp_overlap 71361 71360 71363 71366 71368, overlap 71356 71363 71368 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG CTTAATTAAAACGGT TERM 75 71447 - 71435 - f 73 -7.7 -3.84712 | TAAGCTGATACCAAA GTCCT TTA AGGAC AACATTAACTAGTAA rpsH 71503 - 71901 + | 30S ribosomal protein S8 rplF 72104 - 72640 + | 50S ribosomal protein L6 rplR 72745 - 73101 + | 50S ribosomal protein L18 TERM 76 73352 - 73336 - g 73 -9.5 -3.16564 | overlap 73328 AAAAACATGATCGAA GTACCAA TGG TTGGTAC AACAATCCCTCACGA rpsE 73120 - 73614 + | 30S ribosomal protein S5 rpmD 73629 - 73811 + | 50S ribosomal protein L30 rplO 74027 - 74467 + | 50S ribosomal protein L15 secY 74484 - 75788 + | preprotein translocase subunit SecY TERM 77 75786 - 75821 + F 70 -4.2 -4.66163 | gap 1, opp_overlap 75791 75793 75795, overlap 75791 75792 75795 ATGAATACAGCAGAA TAGAATACA-GGTTGAC ATT GTCAACCTTCTATTTTG TTTTTAAATGACAAT TERM 78 75791 - 75816 + F 79 -4.1 -5.2853 | gap 1, opp_overlap 75791 75793 75795, overlap 75786 75792 75795 TACAGCAGAATAGAA TACA-GGTTGAC ATT GTCAACCTTCTA TTTTGTTTTTAAATG TERM 79 75813 - 75793 - f 72 -8.3 -3.46859 | opp_overlap 75792 75791 75786 75795, overlap 75791 75795 CAGCAGAATAGAATA CAGGTTGAC ATT GTCAACCTT CTATTTTGTTTTTAA TERM 80 75795 - 75811 + F 100 -10.9 -4.1922 | opp_overlap 75793 75791 75795, overlap 75792 75791 75786 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT TERM 81 75811 - 75795 - f 86 -10.9 -3.29569 | opp_overlap 75795 75792 75791 75786, overlap 75793 75791 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT adk 75938 - 76576 + | adenylate kinase TERM 82 76614 - 76578 - f 74 -6.2 -4.51765 | gap 1, opp_overlap 76570 76578 76580 76587, overlap 76569 76579 76581 76587 TAGAACTCAAATAAA TTAT-ACTAATCTACTT GCAT AAGTAGATTAGTAATGA TATACTAGTTTAGTC TERM 83 76611 - 76579 - f 73 -8.8 -3.29975 | gap 1, opp_overlap 76578 76570 76580 76587, overlap 76569 76578 76581 76587 AGAACTCAAATAAAT TATACTAATCTACTT GCAT AAGTAGATTAGTA-A TGATATACTAGTTTA TERM 84 76580 - 76611 + F 78 -10.4 -2.69202 | opp_overlap 76569 76579 76578 76581 76587, overlap 76578 76570 76587 GAACTCAAATAAATT ATACTAATCTACTT GCAT AAGTAGATTAGTAA TGATATACTAGTTTA TERM 85 76610 - 76581 - f 93 -13.9 -3.20126 | opp_overlap 76580 76578 76570 76587, overlap 76569 76579 76578 76587 AACTCAAATAAATTA TACTAATCTACTT GCAT AAGTAGATTAGTA ATGATATACTAGTTT infA 76694 - 76912 + | translation initiation factor IF-1 rpmJ 76938 - 77054 + | 50S ribosomal protein L36 TERM 86 77282 - 77264 - g 71 -7.4 -3.93288 | GTGGATGCAATCAAA GTTGAAGG TGA CCTTCGAC GTGAAGTAAACATGA rpsM 77072 - 77437 + | 30S ribosomal protein S13 rpsK 77455 - 77838 + | 30S ribosomal protein S11 TERM 87 78356 - 78346 - g 87 -3.2 -5.72053 | overlap 78349 78351 GAAGGAAACAAAAAA GATG ATG CACC TGTGGGTACATTGGC rpoA 77884 - 78822 + | DNA-directed RNA polymerase subunit alpha rplQ 78837 - 79223 + | 50S ribosomal protein L17 TERM 88 79346 - 79396 + F 100 -12.9 -4.92791 | opp_overlap 79346 ATTGTTAATATGTAA CGCTTGTTTATGAAAGGTATCTA AGCTA TAGAAACTTTTTATAAGCAGGCG TTTTGTTGTATTATG TERM 89 79466 - 79452 - f 77 -8.6 -3.70437 | opp_overlap 79451 79449, overlap 79450 79457 AGTAAAACAATAACA CAGAAG CCT CTTCTG ATGCGTTTATAAAGT TERM 90 79608 - 79592 - f 73 -3.7 -5.03747 | overlap 79594 79595 AAATGTTCGAAAAAA TACTTGC ATC GCAAACA GATGCTCAAACTATA TERM 91 80020 - 80006 - f 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 92 82304 - 82285 - f 91 -12.2 -3.62096 | opp_overlap 82284 82283 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 93 82995 - 82962 - f 71 -8.9 -3.04983 | overlap 82961 82984 CCAATCTAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 94 86212 - 86243 + F 100 -10.4 -4.43012 | opp_overlap 86219, overlap 86210 86219 GGCCGCCGGTATACT TGAAAAACAAGGTT TGTA AACCTTGTTTTTTG TTTTGATCTTAAGCT TERM 95 86236 - 86219 - f 89 -8.5 -4.64766 | opp_overlap 86210 86212 86219 GGTATACTTGAAAAA CAAGGTT TGTA AACCTTG TTTTTTGTTTTGATC TERM 96 86219 - 86236 + F 100 -8.5 -5.83211 | opp_overlap 86219, overlap 86210 86212 GGTATACTTGAAAAA CAAGGTT TGTA AACCTTG TTTTTTGTTTTGATC SpyM3_0068 86467 - 86652 + | hypothetical protein TERM 97 87864 - 87848 - f 70 -4.5 -4.70659 | TGCCAGACCGAAAAA CAAACTA TAA TAGTTTA AAAGGACTTTGCAAG TERM 98 88364 - 88350 - g 70 -3.6 -4.91109 | CGTTTATTACAAAAA TTCTCT GCG AAAGAA TTAGAGATTGTAGAT adcR 87975 - 88418 + | putative repressor protein TERM 99 88654 - 88623 - g 73 -2.4 -5.33985 | gap 1, opp_overlap 88632 88644, overlap 88626 88632 88642 GCTAAAAAAAATAAA GAC-GGTAAACAATT AAG AATTGCTTACTTGCC GCAGCAAGTAGCTAG adcC 88422 - 89141 + | ABC transporter ATP-binding protein adcB 89134 - 89949 + | putative ABC transporter (permease) TERM 100 89983 - 89959 - T 100 -15.9 -5.29445 | opp_overlap 89959 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC TERM 101 89959 - 89983 + T 100 -15.9 -4.57482 | opp_overlap 89959 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC SpyM3_0072 90372 - 89989 - | putative histidine triad (HIT) protein TERM 102 90159 - 90186 + g 80 -10.6 -3.43676 | CTGAAATGGGAAGGT GCTGCTCTAGCT TAGC AACTAGAGCGGC TTGTAAGTTGATGAG TERM 103 90409 - 90396 - R 76 -4.5 -5.14563 | opp_overlap 90402 90403, overlap 90362 90397 CTCCTTATGAAAAAA CGAGC CAGA GCTCA GCTCGTTTAATCGGT tyrS 91684 - 90428 - | tyrosyl-tRNA synthetase TERM 104 91871 - 91889 + G 85 -2.5 -5.86465 | gap 1 GGTGCTATTACGTAC GTTGAGAC TACT GTCT-AAC TTTTTTTATATTGTT pbp1B 91788 - 94088 + | putative penicillin-binding protein 1b TERM 105 94173 - 94213 + F 77 -4.8 -5.1104 | opp_overlap 94173 94175, overlap 94175 TCCAGTTAGGAAGAA CAGCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGCTC TTTTTGTGTCTATTT TERM 106 94175 - 94211 + F 78 -7.4 -4.15325 | opp_overlap 94173 94175, overlap 94173 CAGTTAGGAAGAACA GCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGC TCTTTTTGTGTCTAT rpoB 94352 - 97918 + | DNA-directed RNA polymerase subunit beta rpoC 98009 - 101632 + | DNA-directed RNA polymerase subunit beta' TERM 107 101643 - 101658 + F 85 -6.8 -5.38951 | opp_overlap 101643 AATAATCTCATGAAA GAGTCC TTAG GGGCTC TTTTTTGTCTGAGTT SpyM3_0077 101802 - 102149 + | putative DNA binding protein TERM 108 102205 - 102179 - f 81 -7.5 -4.41817 | opp_overlap 102179, overlap 102174 CAAAATAAGTTAAAA GAAAATATCAC TTCTT ATGATATTTTC TTTTTTTGTTTACGA TERM 109 102179 - 102205 + F 95 -6.8 -5.95539 | opp_overlap 102179 102174 CAAAATAAGTTAAAA GAAAATATCA CTTCTTA TGATATTTTC TTTTTTTGTTTACGA TERM 110 102273 - 102263 - gf 70 -5.4 -4.33105 | opp_overlap 102255, overlap 102264 CAAGCATTAGCAAAA GCTA TTC TAGC AAAAGCTGAACAGGT TERM 111 102323 - 102335 + GF 91 -6.3 -5.42259 | opp_overlap 102323 ATTTTGCCAAGAGCA GATCA ATA TGATC TTTTTTTACGAATAG comYA 102242 - 103180 + | putative ABC transporter subunit ComYA TERM 112 103281 - 103267 - gf 73 -5.7 -4.56597 | opp_overlap 103252 103271 103274, overlap 103271 TTGCTTTTTTAAAAA GAAGC CAGTT GCTTC AGCTAGATTATGTTC comYB 103116 - 104150 + | putative ABC transporter subunit ComYB comYC 104152 - 104478 + | putative competence protein SpyM3_0081 104438 - 104881 + | putative competence protein SpyM3_0082 104838 - 105122 + | hypothetical protein comYD 105115 - 105549 + | putative competence protein SpyM3_0084 105533 - 105859 + | hypothetical protein SpyM3_0085 105957 - 106910 + | hypothetical protein TERM 113 106903 - 106914 + F 77 -3 -5.58179 | GGAAACTGAGTAATG TCAA TTAA TTGA TTTTTTGTTATAATA TERM 114 106980 - 106970 - g 75 -5.4 -4.6644 | AAGAGAGGTTAAAAA TGTC AAA GACA ATTGCAATTAATGCA ackA 106969 - 108165 + | acetate kinase TERM 115 108180 - 108168 - f 89 -7.7 -5.2894 | AAATACAAAATAAAA GAGAC TAA GTCTC AATAGATTAACCAAG TERM 116 108191 - 108215 + F 100 -9.4 -5.28826 | opp_overlap 108191 GTCTCAATAGATTAA CCAAGTAAGG CAACA CTTTACTTGG TTTTTTATGAGGTTT SpyM3_0087 108351 - 108659 + | hypothetical protein proC 109512 - 108742 - | pyrroline-5-carboxylate reductase pepA 110627 - 109560 - | putative glutamyl-aminopeptidase TERM 117 110752 - 110728 - H 89 -7.2 -5.35815 | overlap 110730 CACAGCAAAGAAAAA TCCCAGAGAC TAGAG ATCTCTGGAA GAAGTGTTTGTCTTT SpyM3_0090 111092 - 111376 + | hypothetical protein TERM 118 111447 - 111469 + G 70 -9.8 -2.60206 | overlap 111446 111445 111449 GGTGTTATTTTTTAC GGCAGACTGG TGT CCAGACTGTC AATTTATTTATCCTA trx.1 111373 - 111690 + | putative thioredoxin SpyM3_0092 111708 - 112334 + | hypothetical protein TERM 119 112384 - 112403 + F 93 -7.2 -5.66338 | opp_overlap 112384 ATGACCAGAAAAAAA GGATTAGG AGCC CTTAATCC TTTTTTCTTATGTTT TERM 120 112403 - 112384 - f 88 -5.8 -5.67967 | gap 1, opp_overlap 112384 ATGACCAGAAAAAAA GGATT-AGG AGC CCTTAATCC TTTTTTCTTATGTTT ssb.1 112486 - 112881 + | single-strand DNA-binding protein SpyM3_0094 113782 - 113141 - | putative deoxyguanosine kinase/deoxyadenosine kinase(I)subunit SpyM3_0095 114779 - 113802 - | tRNA-dihydrouridine synthase TERM 121 114679 - 114655 - G 79 -9.3 -3.86944 | TCCATAACCACCAAA CCAGCACCAAA TTC TTTGGCGATGG TACGAAAGGCAGAGT hslO 115638 - 114766 - | Hsp33-like chaperonin TERM 122 115450 - 115467 + g 70 -3.4 -4.8622 | opp_overlap 115433, overlap 115433 ACCAATCACTTTGAC GGTGAT TTTACT ATCGCC TTTTTGATTAGCCGC nra 117299 - 115764 - | negative transcriptional regulator TERM 123 119148 - 119129 - g 70 -8 -3.63744 | overlap 119127 119140 TTTCTTCTTAAAACA TATCAAGA AAAT TCTTGATA AAGGTTATAAGAAGA cbp 117729 - 119963 + | putative collagen binding protein TERM 124 120472 - 120450 - g 70 -5.7 -4.40221 | gap 1 AAATCAAAGGGAAAA TCTCAACTCT ATTA AGAGT-GAGA GGAATTTAAAAAATT SpyM3_0099 119960 - 120481 + | hypothetical protein TERM 125 121399 - 121388 - g 86 -4.4 -5.49234 | ATATGGAACAAAAAA CAGA CGAA TCTG CTGACGAAATCGTTG SpyM3_0100 120502 - 121536 + | hypothetical protein TERM 126 122187 - 122167 - g 73 -5.6 -4.56729 | AGTAAAAGATCAAAA CAATTTAA ACCTG TTAAATTG AAGCATCATACAAAG TERM 127 122212 - 122228 + G 71 -3.8 -4.91109 | ACAAAGTTCGTTGCT TTTTCA ACGTG TGAAAA TTTTTCTACTGACAA SpyM3_0101 121558 - 122277 + | hypothetical protein SpyM3_0102 122330 - 122881 + | hypothetical protein TERM 128 122973 - 122942 - T 87 -11.7 -3.26204 | opp_overlap 122942 AATGAAACTTATTAA CATCTCCATAGTC TTGCTT GACTTTGGAGATG TTTTTCTATGCTGAT TERM 129 122942 - 122973 + T 100 -11.7 -5.01497 | opp_overlap 122942 AATGAAACTTATTAA CATCTCCATAGTC TTGCTT GACTTTGGAGATG TTTTTCTATGCTGAT SpyM3_0103 124246 - 123041 - | putative multiple sugar metabolism regulator TERM 130 124663 - 124682 + H 100 -9.4 -4.74598 | GCTATAAGTTAAGCT TCCTGTTA TCCC TAACAGGA TTTATTTTAGGTTTA SpyM3_0104 124970 - 126940 + | protein F2 like fibronectin-binding protein TERM 131 126970 - 126992 + T 83 -6.3 -4.85599 | gap 1, opp_overlap 126970 126971, overlap 126971 GACAATAGCGAAAAA G-GGTCCACT TATT AGTGGGCCTC TTTTTCTGGAATCGA TERM 132 126991 - 126970 - T 70 -4.3 -4.76312 | opp_overlap 126970 126971, overlap 126971 GACAATAGCGAAAAA GGGTCCACT TATT AGTGGGCCT CTTTTTCTGGAATCG TERM 133 126971 - 126990 + T 87 -10 -4.05067 | opp_overlap 126970 126971, overlap 126970 ACAATAGCGAAAAAG GGTCCACT TATT AGTGGGCC TCTTTTTCTGGAATC TERM 134 127164 - 127135 - T 100 -10.2 -5.24416 | gap 1, opp_overlap 127158 CAAGCATAATAAAAA GAGTCTGAG-CAA TCATG TTGTCTCAGACTC TGACTGTAATTATGC SpyM3_0105 127823 - 127206 - | hypothetical protein TERM 135 128067 - 128048 - H 83 -2.2 -5.87996 | GAAGCAATAAAAAAA TCATAG TTATTTGT CTATGA AAACGTTGTCATAAT TERM 136 128667 - 128678 + G 75 -5.8 -4.70887 | opp_overlap 128667 GCAAAAAGGGATTAA GGTG CATA CACC TTTGTTTGTTGCTAC atoE 128224 - 129630 + | putative short-chain fatty acids transporter SpyM3_0107 130611 - 129700 - | putative transcriptional regulator SpyM3_0108 130732 - 131916 + | putative acetyl-CoA acetyltransferase atoD.2 131928 - 132587 + | putative acetyl-CoA:acetoacetyl-CoA transferase alpha subunit SpyM3_0110 132590 - 133237 + | butyrate-acetoacetate CoA-transferase, beta subunit SpyM3_0111 134039 - 133359 - | hypothetical protein SpyM3_0112 134213 - 134578 + | hypothetical protein SpyM3_0113 134615 - 135634 + | putative regulatory protein SpyM3_0114 136088 - 136408 + | hypothetical protein TERM 137 136558 - 136542 - g 77 -8 -4.1552 | overlap 136529 GATGCTTTTAACAAA GGCAAC GTCAA GTTGCC ACAAATCGTCCAATA TERM 138 137881 - 137893 + G 78 -4.1 -5.27476 | overlap 137877 CGGCCTATACGTCAA GTCTA GCT TGGAC TTTTATTTTATTAGG ntpI 136398 - 138398 + | V-type ATP synthase subunit I ntpK 138400 - 138879 + | V-type ATP synthase subunit K TERM 139 138920 - 138910 - f 71 -3.2 -5.07567 | CTAGATTTTAAAAAA CGGT GAC ACCA CTAACACTATCAAAA ntpE 138948 - 139532 + | putative V-type Na+ -ATPase subunit E ntpC 139548 - 140546 + | putative V-type Na+ -ATPase subunit C ntpG 140543 - 140863 + | V-type ATP synthase subunit F TERM 140 141244 - 141272 + G 100 -14.7 -3.92641 | opp_overlap 141250 TCAGGGATCGGTCCA GGAGAACCAGTAG TGA CTACTGGTTGTCC TTTGTCGGTCGAGTT TERM 141 141266 - 141250 - g 80 -10.9 -3.40522 | opp_overlap 141244 ATCGGTCCAGGAGAA CCAGTAG TGA CTACTGG TTGTCCTTTGTCGGT TERM 142 142237 - 142253 + G 70 -8.7 -3.35224 | overlap 142235 GCCATCGGCGCGGTT TCTCCTC CTG GAGGGGA TATTTCAGAGCCTGT ntpA 141064 - 142839 + | V-type ATP synthase subunit A TERM 143 143743 - 143731 - g 72 -3.3 -5.03314 | TTGATCGGGAAAAAA GGGTC AGT GACTC AAATTCCTATTTTAA ntpB 142840 - 144255 + | V-type ATP synthase subunit B ntpD 144300 - 144926 + | V-type ATP synthase subunit D TERM 144 145014 - 144977 - T 72 -2.9 -5.2189 | gap 2 TTAAGTAGTAAAAAA GCAAGCCATCAA--AGG GATTAA CCTAACTGATGACTTGC TTTTTAAGTAGCGTG SpyM3_0123 146308 - 145046 - | putative toxic anion resistance protein SpyM3_0124 147199 - 146321 - | hypothetical protein TERM 145 148542 - 148556 + G 70 -7.8 -3.6187 | opp_overlap 148532, overlap 148539 148543 GACAACGACCGGCCG TCCACG TCG CGTGGG TTGGTTTGATTCGGT purA 147637 - 148929 + | adenylosuccinate synthetase TERM 146 148948 - 148970 + F 83 -7 -4.7339 | opp_overlap 148948 GTCTAGTATGACAAA GAGTTGGATA GCG TTTCCAGCTC TTTTTACCGTTTGTT TERM 147 149743 - 149731 - g 72 -3.4 -5.09245 | opp_overlap 149731 CTAAAACGACAAAAA CCAA GCAAG TTGG TTTTGTAGGTGGTAT SpyM3_0126 149256 - 150299 + | putative ABC transporter TERM 148 150319 - 150302 - f 70 -4.1 -4.67038 | opp_overlap 150314, overlap 150313 TCCTGAAAACTAAAA CTGTACA ATAC TGTCCAG AGTCGTCACGAACCG TERM 149 150314 - 150343 + F 100 -10.1 -4.72986 | opp_overlap 150302 150313 AAACTGTACAATACT GTCCAGAGTCG TCACGAAC CGACTTTGGAC TTTTTAATAAAGGTG TERM 150 150387 - 150355 - f 85 -8.6 -4.16016 | gap 1 GGACTTTTTAATAAA GGTGTCAA-GTAGCT CCAC AGATACGTTGACACC AGCCCTGTCTTTTAT nusG 150472 - 151011 + | transcription antitermination protein NusG TERM 151 151051 - 151021 - f 100 -14.2 -5.07567 | opp_overlap 151021 CTATAGGCTAAAAAA GGTCTGATGGTA TAAGTAT TACCATCAGACC TTTTTTAGTTGGCAG TERM 152 151021 - 151051 + F 100 -14.2 -5.26875 | opp_overlap 151021 CTATAGGCTAAAAAA GGTCTGATGGTA TAAGTAT TACCATCAGACC TTTTTTAGTTGGCAG TERM 153 151942 - 151924 - g 74 -6 -4.43844 | opp_overlap 151938 CCATCAGGGACAAAA CAAGGATA TTT TAGCCTTG TCAGAGGTCACTTTT TERM 154 152267 - 152251 - g 72 -4.4 -4.67048 | TGATGCTAAAAGAAA GTCAAC GATTG GTCGAC AAGAAAACGGTCTTT nga 151382 - 152737 + | NAD glycohydrolase SpyM3_0129 152742 - 153227 + | hypothetical protein TERM 155 153641 - 153631 - g 73 -5.4 -4.58663 | AGTACTTGCTAAAAA TGGT GAA ACCA TTGAAAATTTTGTTC slo 153251 - 154966 + | streptolysin O TERM 156 155053 - 155083 + T 100 -13.5 -5.30686 | opp_overlap 155053 CAAATACAGAAAAAA GCTTGTCTATGAG ATACC TTCATAGACAAGC TTTTTTATAACTGTT TERM 157 155083 - 155053 - T 100 -12.8 -5.51046 | opp_overlap 155053 CAAATACAGAAAAAA GCTTGTCTATGA GATACCT TCATAGACAAGC TTTTTTATAACTGTT SpyM3_0131 155347 - 155105 - | hypothetical protein TERM 158 155260 - 155273 + g 76 -3.1 -5.27779 | CTACTGCCTCATTTG CCGAA ACAG TTTGG TTTTTTGGTGTTGCA TERM 159 155600 - 155610 + r 73 -4.6 -4.90471 | TTGTCTCCTTTTATA GGCG GTG TGCC TTTTCTGTTTTACCT TERM 160 155665 - 155692 + r 100 -20 -4.26076 | opp_overlap 155665 TTTGCCAATCAAAAA GCCTAAGGCTGC TTAT GCAGCCTTAGGC TTTTCATAACCGTAG TERM 161 155692 - 155665 - R 100 -20 -4.8622 | opp_overlap 155665 TTTGCCAATCAAAAA GCCTAAGGCTGC TTAT GCAGCCTTAGGC TTTTCATAACCGTAG SpyM3_0132 155902 - 155747 - | hypothetical protein TERM 162 156022 - 156049 + H 81 -7.8 -4.36411 | opp_overlap 156029, overlap 156029 GTGGCGACCTAGGAT TAGAAAACCGCC ACGA GACGGTTTTTTA TTTTAATAGTTAGTG TERM 163 156029 - 156042 + H 90 -3.7 -5.83211 | opp_overlap 156029, overlap 156022 CCTAGGATTAGAAAA CCGCC ACGA GACGG TTTTTTATTTTAATA TERM 164 156042 - 156029 - H 74 -5.9 -4.4891 | opp_overlap 156029 156022 CCTAGGATTAGAAAA CCGCC ACGA GACGG TTTTTTATTTTAATA TERM 165 156166 - 156132 - H 86 -8 -4.8066 | opp_overlap 156161 AAGATAATTTAAAAA GCACCAAAACCAATTA GAA CAATCATTTTTGGTGC TAGAAGCTTCACTCT TERM 166 156799 - 156813 + H 77 -5 -5.04601 | AGGTTAGCAGATCAC GCTTTT TTG AAGAGC TTTTTGGTTTGTGCA metB 156817 - 158037 + | putative cystathionine beta-lyase TERM 167 158019 - 158030 + F 70 -4.4 -4.75356 | ATTGGCCGATTTTGA GCAA GCAC TTGC TTTTTAAGTCTATTT TERM 168 158047 - 158080 + F 100 -10.3 -5.52096 | overlap 158048 TTTTAAGTCTATTTG TCCAGATTGGCTCTG TTTA CAGAGCAAGTCTGGC TTTTTTATTAGCTTT TERM 169 158048 - 158079 + F 100 -13.8 -3.88817 | overlap 158047 TTTAAGTCTATTTGT CCAGATTGGCTCTG TTTA CAGAGCAAGTCTGG CTTTTTTATTAGCTT leuS 158248 - 160749 + | leucyl-tRNA synthetase TERM 170 160844 - 160867 + F 100 -14 -4.83593 | opp_overlap 160844 ACTCATCTAGAAAAA CCACAAGAAC CTTC GTTCTTGTGG TTTTTAATCGTTGTT TERM 171 160867 - 160844 - f 100 -14 -4.88067 | opp_overlap 160844 ACTCATCTAGAAAAA CCACAAGAAC CTTC GTTCTTGTGG TTTTTAATCGTTGTT TERM 172 161113 - 161082 - g 72 -8.8 -3.53811 | CCTAGCTCCCCTAAA CTGGTTCTCGCAAA ATAT TTTGCAAAACCCAG CGTTCTTTGTAGGTC TERM 173 161764 - 161780 + G 73 -7.3 -3.96696 | opp_overlap 161762, overlap 161771 161774 ATTTTCCATGATACT GTTGTTG CAT CAGCAAC TTTGATGTTGGTCTT ulaA 161056 - 162489 + | ascorbate-specific PTS system enzyme IIC SpyM3_0136 162560 - 162838 + | PTS system, 3-keto-L-gulonate specific IIB component SpyM3_0137 162961 - 163446 + | PTS system, 3-keto-L-gulonate specific IIA component ulaD 163537 - 164199 + | 3-keto-L-gulonate-6-phosphate decarboxylase SpyM3_0139 164204 - 165067 + | putative L-xylulose 5-phosphate 3-epimerase araD 165069 - 165773 + | L-ribulose-5-phosphate 4-epimerase TERM 174 165847 - 165869 + F 93 -9.9 -4.19258 | TGTTAATCATTGTTT GGGCAAGTC CTTTT GACTTGTCC TTTTCGATGAACTGT TERM 175 167154 - 167172 + G 80 -2.4 -5.65513 | overlap 167156 TGTAAGGCGCTCGTT TACCGTAA AGC TTATGGGA TTTTTTTAGTTAATC SpyM3_0141 166098 - 167744 + | putative transcriptional regulator TERM 176 167967 - 167949 - f 73 -9 -3.19568 | overlap 167948 TCATTGACAAGAAAG TCTATACT TAA AGTATAGA AACGAAGAACAAATT SpyM3_0142 167997 - 169088 + | putative L-ascorbate 6-phosphate lactonase opuAA 169576 - 170772 + | putative glycine betaine/proline ABC transporter TERM 177 171012 - 171001 - g 89 -5.8 -5.4505 | opp_overlap 170975 CTTGCTAAGAAAAAA TGGC CTTT GCCA ACCTTTACCTTGTTA TERM 178 171648 - 171637 - g 81 -5.8 -5.11112 | overlap 171643 AAACCTCAAGAAAAA GCCA AAGC TGGC AAAACCAATAAATGG opuABC 170830 - 172515 + | putative glycine-betaine binding permease protein TERM 179 172545 - 172564 + F 93 -8.6 -4.74103 | opp_overlap 172538 172545 ATAGCAAATAGAGAA GTCTAGGA ATTT TCCTAGGC TTTTTAGGTTAACCA TERM 180 173383 - 173351 - g 80 -7.9 -4.32046 | overlap 173356 GCCTCAAAAATGAAA GAAAACTTGATCA ATGACCG TGACCAAGCTTTC CTATCTAAAACGCTC TERM 181 173378 - 173356 - g 74 -4.2 -5.10516 | overlap 173351 AAAAATGAAAGAAAA CTTGATCA ATGACCG TGACCAAG CTTTCCTATCTAAAA polA.1 172646 - 175288 + | DNA polymerase I SpyM3_0146 175475 - 175930 + | hypothetical protein spf 175982 - 176449 + | putative ferric uptake regulator TERM 182 176491 - 176464 - T 77 -8.6 -3.61268 | opp_overlap 176468, overlap 176456 176468 GAGTTAACCCTTAAA TAAAGGCATTAT AAAT ATAGTGCCTTTA CAAATCAAAAACCCC TERM 183 176526 - 176503 - T 73 -3.8 -5.04601 | gap 1, opp_overlap 176503 TTTACAAATCAAAAA CCCCCAGTTCA TTT TGG-CTGAGGG CTATTTTTATGGATG SpyM3_0148 177415 - 176552 - | hypothetical protein TERM 184 177689 - 177678 - g 79 -5.8 -4.91977 | TATCAAAACAGAAAA GCAC ACCG GTGC ACGCTTGGGCGAAAT tgt 177634 - 178776 + | queuine tRNA-ribosyltransferase TERM 185 178793 - 178830 + F 100 -12.1 -5.71712 | TAAAAATGCTATGAT CCTGGAACTGAGGGCGA TCTA TCGTCTTTGGTTTCAGG TTTTTTTGTGTAGAC SpyM3_0150 178994 - 179305 + | hypothetical protein SpyM3_0151 179309 - 179848 + | putative biotin synthase TERM 186 179880 - 179911 + F 100 -16 -4.76041 | opp_overlap 179882 TTAAGTTGTGTTGAA CAGGTCTTGGCAGA TTTA TCTGCTAGGACCTG TTTTTGGTGGGTCTC SpyM3_0152 179988 - 180767 + | hypothetical protein SpyM3_0153 180767 - 181282 + | putative cytidine/deoxycytidylate deaminase family protein TERM 187 181409 - 181435 + T 72 -5.1 -4.67234 | opp_overlap 181409 181393 ATAGAATATACAAAA GGGCGTTTCCA AGTAC TAGAAGCGCTC TTTTTCAGATTCAAT SpyM3_0154 183116 - 181896 - | hypothetical protein TERM 188 181997 - 181985 - G 71 -6.3 -4.20932 | opp_overlap 181983 181985 AATACTGATTGAAAA GGTTA TGA TAACC TGTTTGATTCGTCGT TERM 189 182587 - 182597 + g 83 -3.2 -5.58179 | CTGCCTGATTGATAG GCTT CAA AGGC TTTTTTATTGTAGTC TERM 190 183270 - 183283 + H 71 -5.3 -4.4959 | AAAATGAAGCTATTC TCACT TGAA AGTGA TTTTACTTAGTTGGA speG 183529 - 184233 + | pyrogenic exotoxin G precursor TERM 191 184459 - 184470 + F 89 -7.2 -5.2112 | opp_overlap 184458 TTATTACGGTAAAGC GGCC TCAG GGCC TTTTTTCATGATATT TERM 192 185167 - 185177 + G 70 -5.4 -4.41047 | TATTGCCTTTCGCGT GTTC AAA GAAC TTTTGGTTAAAAAAT pgi 184694 - 186043 + | glucose-6-phosphate isomerase TERM 193 186204 - 186157 - T 100 -18.1 -4.43309 | gap 1, opp_overlap 186164 186168, overlap 186161 CAAGGTTAAGTAAAA GCGATAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTAT-GC CAAATTTCAGATAAA TERM 194 186201 - 186161 - T 100 -18.6 -2.80479 | opp_overlap 186164 186168, overlap 186157 GTTAAGTAAAAGCGA TAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTA TGCCAAATTTCAGAT TERM 195 186164 - 186198 + T 100 -18.1 -3.32294 | opp_overlap 186161 186157, overlap 186168 AAGTAAAAGCGATAA TAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTA TTATGCCAAATTTCA TERM 196 186168 - 186194 + T 100 -14.5 -4.30987 | opp_overlap 186161 186157, overlap 186164 AAAAGCGATAATAAA GTGCGCTTCCA GAACA TGGGAGCGCAC TTTATTATGCCAAAT SpyM3_0157 187630 - 186392 - | putative regulatory protein RofA related SpyM3_0158 187899 - 187633 - | putative regulatory protein TERM 197 187787 - 187768 - G 72 -9.4 -3.08088 | AAATTGTCGAAGATA CTGCTTTA TTTT TAAAGCAG TCAAAGTTGTTTGAG TERM 198 188157 - 188132 - H 86 -8.3 -4.81249 | opp_overlap 188132 TTTTAAATTTAAAAA CCTAACCAGCC GGTT AACTGGTCAGG TTTAAACAAGGGAGG TERM 199 188194 - 188171 - H 87 -13.2 -2.71101 | overlap 188168 GGTTTAAACAAGGGA GGGCACCTAC GAGG ATAGGTGCCC AGGAGATTTATGAAA TERM 200 188241 - 188258 + H 70 -4.1 -4.69464 | overlap 188242 AAACCTATTCTCCCA ACGGTTT AGGT AAACCGC TTTTTAGGATGTTTT TERM 201 188433 - 188416 - H 74 -3.5 -5.3671 | gap 1, opp_overlap 188416 188420, overlap 188420 AAGATAATGAAAAAA GAGATTCT CAA AGAA-CTC TTCTAGTCTTTACGA TERM 202 188773 - 188792 + G 74 -6.5 -4.46432 | TGGCGATTGGTGACT CCGATAT TTATTC ATATCGG TTTTGGTCATTTTTT SpyM3_0159 188587 - 189258 + | hypothetical protein TERM 203 189369 - 189314 - T 100 -18.8 -2.98761 | gap 1, opp_overlap 189317 189331, overlap 189331 AGTAGGATGAAACGA CTCAAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTT-GTT TTCTCTAGTGCTTTG TERM 204 189317 - 189367 + T 100 -26 -4.59027 | opp_overlap 189314 189331, overlap 189331 AGGATGAAACGACTC AAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTG TTTTCTCTAGTGCTT TERM 205 189331 - 189353 + T 100 -15 -5.10601 | opp_overlap 189314 189331, overlap 189317 CAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT TERM 206 189353 - 189331 - T 100 -15 -5.1286 | opp_overlap 189331 189317, overlap 189314 CAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT hasC.2 190256 - 189357 - | putative UDP-glucose pyrophosphorylase TERM 207 189404 - 189429 + g 72 -9.1 -3.35046 | overlap 189402 GTTGGATGATGTAGG CTTTCAAGTCA TCTT TGACTTGAGGG TGTTTCAGGGCATAA TERM 208 189516 - 189528 + g 70 -7.7 -3.64487 | opp_overlap 189516 AAACTCACGAGCAAA GACAC GCT GTGTC TTATTGAGGGTATCA TERM 209 189528 - 189516 - G 73 -7.7 -3.80862 | opp_overlap 189516 AAACTCACGAGCAAA GACAC GCT GTGTC TTATTGAGGGTATCA TERM 210 189571 - 189581 + g 76 -6.8 -4.36508 | AGTTGAACTTCATTG CCTG CAC CAGG TTCTTGTTTTTCTAA TERM 211 189766 - 189793 + g 77 -7.8 -4.27441 | gap 1 TCCTCGTGAGGAACC CTCATGACGGCAA TAG TTGCAG-CATGAG TTTCTTCATAGTCAT gpsA 191305 - 190289 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 212 191463 - 191477 + H 71 -5.6 -4.57543 | CAGGTGAGCTGTTGT CATGGC TTT GCCCTG TTCTTTTTAGTTATT TERM 213 191695 - 191678 - g 76 -2.1 -5.45726 | gap 1, overlap 191680 191681 GAGATTGCAAAAAAA TATGATGT AGA ACATC-TA GCAGGTCCTCAAGGT SpyM3_0162 191603 - 192052 + | hypothetical protein SpyM3_0163 192045 - 193751 + | putative ABC transporter, ATP-binding/permease protein SpyM3_0164 193754 - 195538 + | putative ABC transporter ATP-binding/membrane spanning protein TERM 214 195549 - 195566 + F 90 -8.4 -5.14563 | AATAGATGGTATCAG CTCCGC GTCTTA GCGGAG TTTTTTGGTGAACAA TERM 215 196244 - 196222 - g 79 -4.8 -5.08601 | TGATTTCAAGAAAAA CAACGGTTAT CGC AGATCCGTTG AAATGTGTGAGGAGT SpyM3_0165 195656 - 196423 + | hypothetical protein TERM 216 196438 - 196460 + F 72 -2.6 -5.31545 | ATGGCATGATTAAAA GTGGTCCGTT TAA AGTTGACCGC TTTTTTGCTATTCTT TERM 217 196556 - 196568 + G 73 -7.7 -3.80841 | AATTCGTGGTTTCGA GCTTG TTT CAAGC TTTACTAATCCTGAT dut 196533 - 196979 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 218 197008 - 197034 + F 73 -8.8 -3.31726 | opp_overlap 196996, overlap 197012 AAATGCTTATGACAG CAGACCTATTCT TTA AGAGTGGGTTTG TCTTGTCTAGGGGAG TERM 219 197012 - 197030 + F 72 -6 -4.31164 | overlap 197008 GCTTATGACAGCAGA CCTATTCT TTA AGAGTGGG TTTGTCTTGTCTAGG TERM 220 198347 - 198334 - g 79 -6.7 -4.57569 | opp_overlap 198334 CTATGCTCCTAAAAA TGCCT TGCA AGGCA TTGATATCTCTCAAG radA 197060 - 198421 + | DNA repair protein RadA SpyM3_0168 198610 - 199107 + | hypothetical protein TERM 221 199125 - 199140 + F 100 -9 -5.93252 | AGTAGCCAAGTTGTA GAGCTG AATT CAGCTC TTTTTTATTTTTAAA SpyM3_0169 199238 - 199948 + | hypothetical protein TERM 222 199965 - 199982 + F 91 -4.1 -5.78622 | opp_overlap 199965 199960 CAAAATAACATAAAA TCAGCTT TTTA GGGCTGA TTTTTTTTCGCCTAA gltX 200131 - 201576 + | glutamyl-tRNA synthetase TERM 223 201639 - 201662 + F 86 -6.1 -5.39755 | opp_overlap 201639 201642 GTCACGACAACGAAA GATTGAAGA TTAAGT TCTTCAGTC TTTTTTATCGTTATC SpyM3_0171 201971 - 203317 + | putative histidine kinase TERM 224 203460 - 203470 + G 70 -5.4 -4.4078 | opp_overlap 203467 TGCTAATATGATATT TGAC AAA GTCA TTTTGATTGACCAAC SpyM3_0172 203314 - 203892 + | putative histidine kinase SpyM3_0173 203913 - 204593 + | putative histidine kinase SpyM3_0174 204597 - 205337 + | putative response regulator TERM 225 205393 - 205372 - f 77 -5.9 -4.77036 | opp_overlap 205370 205372 TTTTAGGACGAAAAA GCAACATTT CAGG AAATGATGC TCTTATTGAAGTATT TERM 226 205561 - 205551 - f 71 -5.4 -4.52589 | opp_overlap 205551 205544 GCTCGGCAGACAAAA TGAC GAT GTCA GTTGTCTTTGTTTGG TERM 227 205613 - 205626 + F 100 -9.5 -5.1675 | opp_overlap 205613 205612 AAATCAGTATTAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA TERM 228 205626 - 205613 - f 73 -9.5 -2.89138 | opp_overlap 205613, overlap 205612 AAATCAGTATTAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA rnpA 205877 - 206236 + | ribonuclease P TERM 229 206587 - 206571 - gf 73 -2.2 -5.24129 | GCCCTTTACAAAAAA TATGGG GTTAA CCCTTA TGCTAGTCTCTTACC SpyM3_0176 206202 - 207029 + | hypothetical protein TERM 230 207631 - 207621 - g 70 -8.2 -3.7108 | ATTTGCAGATTGAAA CGCC AGA GGCG GGACGTGTGATTGGT SpyM3_0177 207041 - 207955 + | hypothetical protein TERM 231 207969 - 207997 + F 90 -8.3 -5.36441 | AGATCCTAAAAAGAA TCTTTGGTAGTTA GTT TAGCTATCGAAGA TTTTTTGTATGGCCA rpmH 208270 - 208404 + | 50S ribosomal protein L34 TERM 232 208430 - 208452 + F 79 -5.6 -5.15117 | opp_overlap 208430 TACAACTAAAGTAAA CCAAGAGT GCTCGAG GCTCTTGG TTTTTTAACGTTTTC TERM 233 208714 - 208704 - g 85 -6.8 -5.00851 | ACCAACCAAAGAAAA GCTC ATG GAGC AGTTAAAGGGTGGGA SpyM3_0179 208678 - 209382 + | N-acetylmannosamine-6-phosphate 2-epimerase SpyM3_0180 209431 - 210489 + | N-acetylneuraminate-binding protein TERM 234 210505 - 210533 + F 73 -7.5 -3.80174 | opp_overlap 210502, overlap 210519 210521 GGACCTAAAAATGTT GTTCGTACAGG TGCTTTC CCTGTAAGAAC TTCTTATGGGGATCT TERM 235 210521 - 210545 + F 81 -10.1 -3.34398 | opp_overlap 210502, overlap 210505 210519 TTCGTACAGGTGCTT TCCCTGTAAGA ACT TCTTATGGGGA TCTTTACAAAGACAA SpyM3_0181 210565 - 210750 + | putative sugar transporter sugar binding lipoprotein TERM 236 210800 - 210815 + F 88 -7.6 -5.00884 | overlap 210766 TGTCAAATGGTCACT GGAAAG GAGC CTTTCC TTTTTTAGGAGAGAT TERM 237 210895 - 210876 - g 81 -5.8 -5.09521 | gap 1, opp_overlap 210876 TCAATAAATTAAAAA TGAGA-GAG ACG CTCATCTCA TACGCTTTCTTAGCT SpyM3_0182 210875 - 211741 + | N-acetylneuraminate transport system permease protein SpyM3_0183 211754 - 212584 + | N-acetylneuraminate transport system permease protein TERM 238 213270 - 213286 + G 83 -9.5 -3.9122 | TGGTTTTTACCTTGC CGTTAAC CCT GTTAACG TTATTTGGAGGCGTG SpyM3_0184 212741 - 213403 + | hypothetical protein nanH 213415 - 214329 + | N-acetylneuraminate lyase SpyM3_0186 214351 - 215289 + | putative glucose kinase TERM 239 215417 - 215371 - T 82 -7.4 -4.58663 | opp_overlap 215371 215379 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGCCGTTATTTTC TTTGTCAATAATAGT TERM 240 215371 - 215417 + T 76 -7.4 -3.93963 | opp_overlap 215371, overlap 215379 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGCCGTTATTTTC TTTGTCAATAATAGT SpyM3_0187 216230 - 215400 - | putative phosphosugar-binding transcriptional regulator TERM 241 216629 - 216649 + GH 71 -7.5 -3.53091 | opp_overlap 216621 CAAGAAATGGGCGTG GCCTACCAT AAT GTGGTTGGC TTTGACCAGGCCACT TERM 242 217104 - 217084 - gH 77 -6.1 -4.59773 | overlap 217085 217086 217102 GGTCACTTTCAAAAA GGCCCTTGA TAT TCAAGAGGC AGCGCAGCACTTGCC SpyM3_0188 216419 - 217306 + | hypothetical protein SpyM3_0189 217278 - 217868 + | hypothetical protein ksgA 217982 - 218854 + | dimethyladenosine transferase TERM 243 219097 - 219108 + F 73 -4.4 -4.90266 | opp_overlap 219097 TACCTCAAAAAATCA TCAG TGAT CTGA TTTTTAGTTGATAAA SpyM3_0191 219279 - 220151 + | ribosome-associated GTPase TERM 244 220645 - 220629 - g 77 -5.1 -4.8543 | overlap 220630 GAATGTTTAGAAAAA GTGGCTA CCG TAGCCAA ATGGCGAGATGAAAA TERM 245 220644 - 220630 - g 72 -8.6 -3.50535 | overlap 220629 AATGTTTAGAAAAAG TGGCTA CCG TAGCCA AATGGCGAGATGAAA rpe 220161 - 220823 + | ribulose-phosphate 3-epimerase TERM 246 220897 - 220928 + G 73 -8.8 -3.7108 | GTCGGTATTGATAGT GGGAGCCTGTTTTT ATTG GAAAATGGGCTTCC TTTGAATATGGCCGT SpyM3_0193 220816 - 221448 + | hypothetical protein TERM 247 221763 - 221748 - g 78 -4 -5.25803 | AACGCTTAGAAAAAA TTAACC AGCA GGTCAA CCAATCGCTCAAAAA TERM 248 222500 - 222484 - g 82 -3.7 -5.52909 | overlap 222486 TAATATCCAAAAAAA TGCTGAT GAC ATCAGTA AAATTTTGGGCAATG SpyM3_0194 221450 - 222721 + | hypothetical protein cbf 222711 - 223649 + | CMP-binding factor TERM 249 223707 - 223729 + F 100 -9.3 -4.77216 | opp_overlap 223709 TTTTGATGTGCTTAA CACTTATGA TGGTT TCATAAGTG TTTTTGGCTCTTGTT TERM 250 224634 - 224620 - g 78 -7.1 -4.36914 | TGTGTTTGCAGAAAA CGCTC AATCA GAGCG TGAGCAAATGACCTT TERM 251 224699 - 224689 - g 73 -5.4 -4.62783 | opp_overlap 224689, overlap 224676 GATTGATGTCAAAAA CAAC AAT GTTG TTGTAGAAGTTGGTA purR 223916 - 224755 + | purine operon repressor prgA 224746 - 227367 + | putative surface exclusion protein TERM 252 227419 - 227449 + F 84 -6.3 -5.1166 | gap 1, opp_overlap 227419 TCTATTTGACATGAA GTACCGTCT-GTGT TACT ATATTAGACGGTAC TTTTTACTTTTGGTC rpsL 227575 - 227988 + | 30S ribosomal protein S12 rpsG 228009 - 228479 + | 30S ribosomal protein S7 TERM 253 228888 - 228908 + F 100 -9.7 -4.75372 | opp_overlap 228888 CAAATATTTAGATAA CGGGTAGGT CCT GCCTATCCG TTTTTGCTAAATAGT TERM 254 229541 - 229517 - g 77 -8 -4.16443 | opp_overlap 229517, overlap 229513 AGATGAAAGCAGAAA TCTATACCAA CGACC TTGGTACAGA TATCCTTGAAGAAGA fusA 228964 - 231042 + | elongation factor G TERM 255 231047 - 231034 - f 76 -4.5 -5.06961 | overlap 231043 231046 ATTAAGAAAAACAAA GGTGA ATAA CCACC ACTAAGAGGTTGAGG TERM 256 231079 - 231053 - f 73 -8.9 -3.2613 | gap 1, opp_overlap 231053, overlap 231046 231043 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 257 231053 - 231079 + F 95 -8.9 -5.21709 | gap 1, opp_overlap 231046 231043 231053 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 258 231177 - 231166 - f 77 -3 -5.53436 | opp_overlap 231166, overlap 231157 ACAGAATAGAAAAAA GAAA GCCC TTTC CTATATTTGGTGGGT plr 231383 - 232393 + | glyceraldehyde-3-phosphate dehydrogenase TERM 259 232575 - 232549 - T 70 -3.8 -4.98522 | opp_overlap 232549 AACTCTATACAAAAA GGCTAAGA TGGAAGGGGTG TCTTAGCC TTTTTTTGTCTGACT TERM 260 232549 - 232575 + T 86 -5.2 -5.72616 | opp_overlap 232549 AACTCTATACAAAAA GGCTAAGATG GAAGGGG TGTCTTAGCC TTTTTTTGTCTGACT TERM 261 232708 - 232722 + T 82 -5.7 -5.26918 | TCAGTCTTCTGTAAG CTGAC GATAA GTCAG TTTTTTCTGCCATAT SpyM3_0202 233617 - 232877 - | putative amino acid ABC transporter ATP-binding protein TERM 262 233161 - 233176 + g 73 -5.4 -4.57569 | CAGATAAGGCTCTGG CAATGG CAAC CCGTTG TTTTTGCCCCCCTGA SpyM3_0203 235178 - 233610 - | putative glutamine-binding periplasmic protein TERM 263 235158 - 235170 + g 80 -6.3 -4.81551 | opp_overlap 235158 235156 CAAGGCGACCAAACA GCTAA GGA TTAGC TTTTTCATATAGGTC TERM 264 236122 - 236142 + G 71 -3.9 -5.00196 | opp_overlap 236124, overlap 236113 236126 GCTATTTGGCAAAGT CATTCCTCT GGT AGAGGTAGG TTTTCTTCTTTCGCA SpyM3_0204 235376 - 237301 + | hypothetical protein uppP 237367 - 238206 + | undecaprenyl pyrophosphate phosphatase TERM 265 238230 - 238253 + F 100 -12.4 -4.83759 | ATCGTTTAGGATGTT GCGACAGACC TTGG GGACTGTCGC TTTTTAAATTTCCTT TERM 266 238385 - 238368 - f 71 -5.6 -4.62772 | TGGAAATGAAACAAA TTAGCG AGACAA CGCTAA AAATAACAATTAGTA TERM 267 238481 - 238461 - g 82 -4 -5.4505 | TTCCTCAAGAAAAAA CAGAAGAG TTTTT CTATTCTG TGATGGACGAACTCG mecA 238424 - 239113 + | adaptor protein TERM 268 239752 - 239767 + G 85 -5.4 -5.33848 | overlap 239754 CATTTTGGTCTTGAT TTCTGC TATT GCAGGA TTTTTTCCTTATAAT rgpG 239171 - 240289 + | putative polysacharide biosynthesis protein SpyM3_0208 240411 - 241181 + | putative ABC transporter, ATP-binding protein SpyM3_0209 241276 - 242538 + | hypothetical protein TERM 269 242783 - 242799 + G 71 -6.5 -4.2704 | AATATGAGGCCAGTC GCCAGCA GGT TGCTGAC TTTATTCATGCTAAA SpyM3_0210 242569 - 243795 + | putative aminotransferase SpyM3_0211 243782 - 244261 + | hypothetical protein SpyM3_0212 244254 - 245672 + | hypothetical protein TERM 270 245732 - 245749 + T 77 -5.6 -4.90013 | TTATGAGTTGTAGTA CTAACC CCAAGT GGTTAG TTTTTAGTTGCCTTA TERM 271 245776 - 245823 + T 77 -8.7 -3.65224 | opp_overlap 245779 245781 245790, overlap 245780 245781 245783 245790 CTTAAACACGTAAGA TAACATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAATTCA TTATTGGCGTCCCAT TERM 272 245820 - 245779 - T 87 -10.4 -3.7212 | opp_overlap 245776 245780 245781 245783 245790, overlap 245781 245790 AAACACGTAAGATAA CATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAAT TCATTATTGGCGTCC TERM 273 245780 - 245819 + T 100 -13.9 -3.54158 | opp_overlap 245779 245781 245790, overlap 245776 245781 245783 245790 AACACGTAAGATAAC ATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAA TTCATTATTGGCGTC TERM 274 245781 - 245818 + T 100 -17.4 -2.72013 | opp_overlap 245779 245781 245790, overlap 245780 245776 245783 245790 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 275 245818 - 245781 - T 100 -17.4 -3.42884 | opp_overlap 245781 245780 245776 245783 245790, overlap 245779 245790 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 276 245783 - 245816 + T 100 -15.6 -2.89971 | opp_overlap 245781 245779 245790, overlap 245781 245780 245776 245790 ACGTAAGATAACATA TCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGA TAATTCATTATTGGC TERM 277 245790 - 245809 + T 83 -7.9 -4.81685 | opp_overlap 245781 245779 245790, overlap 245783 245781 245780 245776 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT TERM 278 245809 - 245790 - T 88 -7.9 -4.88711 | opp_overlap 245790 245783 245781 245780 245776, overlap 245781 245779 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT SpyM3_0213 247005 - 245824 - | putative DD-carboxypeptidase TERM 279 246483 - 246461 - G 71 -6.2 -4.16921 | opp_overlap 246461 246460 TAATAACCTTGAAAA GCTTGTGCTG CTG CACCACTAGC GTTTGAAAAATGAGT TERM 280 247144 - 247121 - R 85 -6.8 -5.24003 | gap 1 AATAAAAATGAAAAA GACTG-CAGAA GTA CTCTGTCAGTC AATGTCATACAAAAA TERM 281 247197 - 247180 - R 79 -8.5 -3.89346 | GTGTTATTCTATAAA GAGGTAT TGAC ATACCTC ACAAAACGGTTCCAC dacA 248405 - 247173 - | putative D-alanyl-D-alanine carboxypeptidase TERM 282 248046 - 248030 - G 71 -9.5 -2.78679 | opp_overlap 248029 248028, overlap 248029 TTTTTTCAGCTAAAG CAATAGC GGG GCTATTG GCGTTATTAACAACT TERM 283 250012 - 249996 - g 73 -7.3 -4.09685 | GCTGAGTTTGCAAAA GCCAAAG AAG CTTTGAC AGCTGAAGGTGTAAC TERM 284 250173 - 250187 + G 73 -10 -2.78384 | opp_overlap 250172 250164 GAAACATCAACTCAC GAAGCC CAA GGCTTC TATGCTGAGACCCCA oppA 248736 - 250706 + | oligopeptide permease TERM 285 250761 - 250709 - f 95 -8.8 -5.26119 | gap 1, opp_overlap 250713 250713 250721 250724, overlap 250712 250713 CGTTGAAAAATAAAA CGAT-GTTCAAAAGAACTTTCTC GTTTATGT GAGGAAGTTCTTTTGAACTATTG AGGATAACTATGAAA TERM 286 250757 - 250712 - f 87 -10.7 -3.43674 | opp_overlap 250713 250713 250721 250724, overlap 250709 250713 TGAAAAATAAAACGA TGTTCAAAAGAACTTTCTC GTTTATGT GAGGAAGTTCTTTTGAACT ATTGAGGATAACTAT TERM 287 250713 - 250756 + F 100 -17.8 -3.04461 | opp_overlap 250712 250709 250713, overlap 250713 250721 250724 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTCGT TTAT GTGAGGAAGTTCTTTTGAAC TATTGAGGATAACTA TERM 288 250756 - 250713 - f 93 -14.2 -2.64578 | opp_overlap 250713 250713 250721 250724, overlap 250712 250709 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTC GTTTATGT GAGGAAGTTCTTTTGAAC TATTGAGGATAACTA TERM 289 250721 - 250748 + F 78 -7.8 -4.1964 | opp_overlap 250713 250712 250709, overlap 250713 250713 250724 AAACGATGTTCAAAA GAACTTTCTCGT TTAT GTGAGGAAGTTC TTTTGAACTATTGAG TERM 290 251534 - 251520 - g 74 -4.3 -4.87665 | opp_overlap 251520, overlap 251527 CCGTAGCTACAAAAA TCCAA AATCA TTGGA TGATATCACCAAGGT oppB 250771 - 252273 + | putative oligopeptide permease oppC 252273 - 253199 + | putative oligopeptide permease oppD 253208 - 254278 + | putative oligopeptide ABC transporter, ATP-binding protein TERM 291 254326 - 254308 - g 86 -10.4 -4.01564 | TAAAAGACCTAGAAA TTTCCTTC GGA GAAGGAAA GAAAAAATTTGTTGC oppF 254271 - 255194 + | putative oligopeptide ABC transporter, ATP-binding protein TERM 292 255257 - 255279 + F 77 -4.8 -5.13722 | overlap 255242 255263 GATTTAGTTTTGTAT TGTAGAGGAC TAA GTCCTTTTCG TTTTATTTTGATACG TERM 293 255263 - 255273 + F 83 -6.8 -4.83677 | overlap 255242 255257 GTTTTGTATTGTAGA GGAC TAA GTCC TTTTCGTTTTATTTT TERM 294 255385 - 255400 + F 77 -3.3 -5.55695 | AGAGCTCGTCTTTGT CCATT CTTTAT AATGG TTTTTTGTCTTCTTC TERM 295 255439 - 255452 + F 74 -2.3 -5.47218 | opp_overlap 255439 GATGCTTCTTTCAAA CGGAG TTCC CTCGG TTTTTTTAAGTAAGC TERM 296 255588 - 255598 + F 82 -5.4 -5.31072 | CTCTTGTTTTCTCAA CAGT ATA ACTG TTTTTCTTATATTGT TERM 297 255836 - 255797 - f 100 -9.4 -5.27923 | opp_overlap 255799 255806, overlap 255799 TAATTTCATAAAAAA TACCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGGTG TAGTTCAAGGCTTTT TERM 298 255834 - 255799 - f 100 -12 -4.26475 | opp_overlap 255799 255806, overlap 255797 ATTTCATAAAAAATA CCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGG TGTAGTTCAAGGCTT TERM 299 255799 - 255834 + F 95 -14.9 -2.90571 | opp_overlap 255799 255797, overlap 255806 ATTTCATAAAAAATA CCCCGAACGTTAGAT TTTTTT GTCTAACGTTTGGGG TGTAGTTCAAGGCTT TERM 300 256162 - 256148 - f 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 301 258446 - 258427 - f 91 -12.2 -3.62096 | opp_overlap 258426 258425 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 302 259138 - 259105 - f 71 -8.9 -3.03412 | overlap 259104 259127 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 303 261350 - 261367 + F 89 -6.3 -5.61824 | opp_overlap 261350, overlap 261341 GGCGGAGTAGAGAGA GGTAGGA AGCG TCCTATC TTTTTTTGCATTTTA TERM 304 261530 - 261507 - f 100 -14 -5.68023 | opp_overlap 261507 GCATAATGAAAAAAA CAACAGGACA CTAA TGTCCTGTTG TTTTTTTGTGGTTCT TERM 305 261507 - 261530 + F 100 -14 -5.73339 | opp_overlap 261507 GCATAATGAAAAAAA CAACAGGACA CTAA TGTCCTGTTG TTTTTTTGTGGTTCT comX.1 261586 - 262071 + | putative transcriptional regulator ComX1 TERM 306 262368 - 262395 + F 100 -12.2 -5.04597 | AATCATTTGTGATTA TCTTATCAGGAG TTGA CTCTTGATAAGA TTTTTGTATATCAGT SpyM3_0221 262681 - 263097 + | IS1548 transposase SpyM3_0222 263078 - 263815 + | IS1548 transposase SpyM3_0223 263921 - 264505 + | hypothetical protein TERM 307 264581 - 264565 - g 87 -5.1 -5.4659 | overlap 264555 GAAGACAAAGAAAAA GCTGG TTTTACG CCAGC TGCTGCTTTGAAAAA SpyM3_0224 264505 - 265623 + | GTP-binding protein YqeH TERM 308 265664 - 265649 - g 78 -2.6 -5.43866 | GAAGTTGGAAAAAAA TGCTTA CAAG TAAACA AAGAGCTTTCTTAAA SpyM3_0225 265648 - 265956 + | hypothetical protein nadD 266025 - 266657 + | nicotinic acid mononucleotide adenylyltransferase TERM 309 267120 - 267108 - g 70 -3.3 -4.86001 | opp_overlap 267108 ATGACGCTAGAAAAA TCGCG AAG CTCGA TTTGAATCAGGCTGT SpyM3_0227 266654 - 267247 + | hypothetical protein TERM 310 267520 - 267535 + G 82 -4 -5.40072 | TTGCTTGATTTGACC GATGTG GTGG TACATC TTTTTTTAGAAGACA SpyM3_0228 267247 - 267624 + | iojap protein family TERM 311 267638 - 267656 + F 76 -6.7 -4.60487 | opp_overlap 267638 267636 AATGTTACAAAGAGA CCTTGTC AATAC GACAGGG TTTTTGAGGATGATA SpyM3_0229 267672 - 268415 + | hypothetical protein TERM 312 269049 - 269037 - g 76 -3.4 -5.28176 | GCTATCCACAAAAAA CACA AAAAA TGTG GGAAATCTTTGCTGG SpyM3_0230 268637 - 269743 + | hypothetical protein TERM 313 269738 - 269728 - f 84 -5.4 -5.58179 | opp_overlap 269735 TATTATAATAAAAAA TGAG AGG CTCA ATTAAACTCTAATTG TERM 314 269735 - 269755 + F 93 -7 -5.41746 | opp_overlap 269728 ATAAAAAATGAGAGG CTCAATTA AACTC TAATTGAG TTTTTTTGGGGGCTT SpyM3_0231 270225 - 270941 + | hypothetical protein TERM 315 270984 - 270963 - f 84 -5.9 -5.35721 | opp_overlap 270963 ATAGAATAATAAAAA GAGTTGAAA TCTA TTTCAGCTC TTTTTAAGTGATGCT TERM 316 270963 - 270984 + F 86 -8.1 -4.68994 | opp_overlap 270963 ATAGAATAATAAAAA GAGTTGAAA TCTA TTTCAGCTC TTTTTAAGTGATGCT TERM 317 271183 - 271169 - g 75 -10 -3.23296 | AACAATATTTAGGAA GGGCAA CAA TTGCCC TAGCATCAACCCTTG atmA 271144 - 271986 + | ABC transporter substrate-binding protein TERM 318 272707 - 272697 - g 70 -5.4 -4.3453 | overlap 272693 AAGGCTAAATACAAA TCAG TAG CTGA TCTGCCAAATGGTGC atmB 272310 - 273155 + | ABC transporter substrate-binding protein atmD 273405 - 274469 + | ABC transporter ATP-binding protein atmE 274470 - 275162 + | ABC transporter permease TERM 319 275201 - 275164 - T 100 -10.2 -4.57482 | gap 2, opp_overlap 275169 275172, overlap 275169 TTAGTCATAAATAAA CGAAACAACACCCTAAGT TTTT ACTTAGGGTGTTGTT--G TTTAGATGATATCAT TERM 320 275169 - 275198 + T 100 -18.1 -3.98075 | opp_overlap 275164 275169, overlap 275172 CATAAATAAACGAAA CAACACCCTAAGT TTTT ACTTAGGGTGTTG TTGTTTAGATGATAT TERM 321 275198 - 275169 - T 100 -18.1 -4.29621 | opp_overlap 275169 275172, overlap 275164 CATAAATAAACGAAA CAACACCCTAAGT TTTT ACTTAGGGTGTTG TTGTTTAGATGATAT TERM 322 275172 - 275195 + T 100 -14 -4.10744 | opp_overlap 275169 275164, overlap 275169 AAATAAACGAAACAA CACCCTAAGT TTTT ACTTAGGGTG TTGTTGTTTAGATGA braB 276586 - 275216 - | putative branched-chain amino acid transport protein SpyM3_0237 276895 - 278034 + | serine/threonine transporter SstT TERM 323 278093 - 278045 - T 88 -12.9 -3.14026 | gap 1, opp_overlap 278057, overlap 278057 CATAGCTAGATTTAA CATAGTAAAAAA-CATCCTTGG AAAACG CCAAGGATGTTTTTTTACTATT TAAGATAGCCAAGAT TERM 324 278057 - 278080 + T 100 -11.1 -5.66989 | opp_overlap 278045 278057 TAACATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTACTATTTA TERM 325 278080 - 278057 - T 100 -11.1 -5.27399 | opp_overlap 278057, overlap 278045 TAACATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTACTATTTA SpyM3_0238 278763 - 278089 - | hypothetical protein SpyM3_0239 280164 - 278773 - | putative potassium uptake protein TERM 326 280220 - 280203 - R 82 -5.6 -5.23016 | opp_overlap 280203 280202 AAATAAGTTAAAAAA GCTAAG TTTCAT CTTAGC CTTTGGTACTATTTA gidB 280946 - 280233 - | glucose-inhibited division protein B TERM 327 280591 - 280579 - G 83 -3.4 -5.55664 | CTACCATGAAAAAAA TGGA CATTT TCCA AGCCCAATTCCTGAG TERM 328 280790 - 280803 + g 84 -6.7 -4.85918 | AATCATAAAAATGCT TGAGG TAAA CCTCA TTTTCTTCTGTAATA TERM 329 281462 - 281443 - g 74 -6.5 -4.48175 | AAAAGCTAACGAAAA CTTCTTG AAATTA CAAGAAG AGTTGACCAATACGG lemA 281096 - 281653 + | putative cytoplasmic membrane protein TERM 330 281730 - 281742 + G 70 -3.4 -4.85618 | opp_overlap 281730 ATTTCACAAAATAAG CAAC GAACA GTTG TTTTATTAGTTGTTT TERM 331 282071 - 282056 - g 83 -9 -4.09864 | opp_overlap 282057 282058, overlap 282057 ATCTAGCCCTCAAAA TGCTGC TGTT GCAGCA ACGACAGGTTTACTT htpX 281700 - 282596 + | heat shock protein HtpX TERM 332 282593 - 282624 + F 79 -3.8 -5.51046 | gap 1 AAGGTTAAAAAACAT GTGAGCGTTTGGG GTTTTTG CTCAAGC-CTCAC TTTTTTATGTCTTTG TERM 333 283335 - 283312 - g 83 -6.1 -5.093 | opp_overlap 283312 283329 TCTAAAAGAAGAAAA GCAAAAAGA AAATAA TCCTTTTGC TAGCTTGCAAGGGTT SpyM3_0243 282830 - 283363 + | hypothetical protein TERM 334 283681 - 283666 - g 74 -6.2 -4.43681 | opp_overlap 283666 283665 283661 TATTGAAGATGAAAA GAATCT GGCT AGATTC GTTTCTCTTGAGCTG csrR 283631 - 284317 + | two-component response regulator TERM 335 284504 - 284534 + G 82 -8.4 -4.27316 | AAGCTGTAAATATTG TTAGAGTTCGTCTT TCT GAGGTGGACTCTAA TTTTACATTAGAGAA csrS 284323 - 285825 + | two-component sensory transduction histidine kinase SpyM3_0246 286040 - 286534 + | transcriptional regulator NrdR dnaB 286518 - 287693 + | putative chromosome replication initiation protein/membrane attachment protein TERM 336 288303 - 288287 - g 70 -2.9 -5.09895 | opp_overlap 288288, overlap 288288 CATTGATGTAAAAAA TGCCATT TCA AACGGCT CTGTTAAAGAAGAAA dnaI 287694 - 288596 + | primosomal protein DnaI engA 288659 - 289969 + | GTP-binding protein EngA TERM 337 290023 - 290055 + F 95 -8.5 -4.92783 | opp_overlap 290023 TCTCATCATTGATAA GGACTGTGTTGTGTA TGT TACAGGAGACAGTCC TTTTTATAATACCTT snf 290176 - 293274 + | putative SNF helicase SpyM3_0251 293518 - 294120 + | hypothetical protein TERM 338 294570 - 294599 + G 76 -3.5 -5.2853 | overlap 294584 TTTAATTGGTGATGG TACTGGGCGTGGG TCTG CTAATGCGCAGTA TTTTGTTTTTGAATC murC 294160 - 295488 + | UDP-N-acetylmuramate--L-alanine ligase TERM 339 295494 - 295508 + F 100 -11.4 -4.58466 | opp_overlap 295492 TAACCAATAACATGT CCTGCC TTA GGCAGG TTTTCTCATTCTAAA SpyM3_0253 295534 - 296016 + | putative arylalkylamine n-acetyltransferase TERM 340 297039 - 297022 - g 76 -3.5 -5.32699 | opp_overlap 297031 GGAAAGACCAAAAAA GCTAAAA CACC TTTTAAC GAGAAGGATTTTTTG TERM 341 297670 - 297647 - g 81 -6.8 -4.68593 | opp_overlap 297649 TTTACTATGCAAAAA CATTTGAAGA ACAC TCTGCAAATG TTGAAAAATATGTGA SpyM3_0254 296134 - 297702 + | putative aminodeoxychorismate lyase TERM 342 297696 - 297742 + F 100 -23.5 -3.33696 | gap 1, opp_overlap 297696 297704 297710, overlap 297704 297710 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 343 297742 - 297696 - f 100 -23.5 -2.85503 | gap 1, opp_overlap 297696 297704 297710, overlap 297704 297710 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 344 297704 - 297735 + F 100 -20.4 -4.10331 | opp_overlap 297696 297704 297710, overlap 297696 297710 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 345 297735 - 297704 - f 100 -20.4 -3.82097 | opp_overlap 297704 297696 297710, overlap 297696 297710 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 346 297710 - 297729 + F 100 -12.2 -4.42513 | opp_overlap 297704 297696 297710, overlap 297704 297696 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT TERM 347 297729 - 297710 - f 100 -12.2 -4.36903 | opp_overlap 297710 297704 297696, overlap 297704 297696 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT greA 297775 - 298257 + | transcription elongation factor GreA TERM 348 298456 - 298433 - T 71 -3.1 -5.17488 | overlap 298436 AATACCAAAAGAAAA GACCAGCAC CTTAAT GTACTGACC CCAAAAAGTTGGACA TERM 349 298777 - 298824 + T 100 -15.8 -5.38951 | overlap 298778 ATCGTTAGATTTTTT TGATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATCG TTTTTTGTCTAACTT TERM 350 298778 - 298823 + T 100 -17.1 -3.81744 | overlap 298777 TCGTTAGATTTTTTT GATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATC GTTTTTTGTCTAACT SpyM3_0256 299804 - 298881 - | OxaA-like protein precursor SpyM3_0257 300164 - 299886 - | putative acylphosphate phosphohydrolase SpyM3_0258 300424 - 301161 + | 23S rRNA methyltransferase SpyM3_0259 301227 - 301700 + | hypothetical protein SpyM3_0260 301715 - 302404 + | hypothetical protein TERM 351 302446 - 302398 - f 100 -18.8 -4.1552 | gap 1, opp_overlap 302407 302414, overlap 302401 302414 TATTTTTGGAAGAAA TGATTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA-CA GGATAAGTAAACTGT TERM 352 302444 - 302401 - f 100 -21.6 -3.10244 | opp_overlap 302407 302414, overlap 302398 302414 TTTTGGAAGAAATGA TTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA CAGGATAAGTAAACT TERM 353 302407 - 302438 + F 95 -14.8 -3.02511 | opp_overlap 302401 302398 302414, overlap 302414 AAGAAATGATTAACA TTAAAAAGTGAGTA TAAC TACTCACTTTTTAA TGTTAACAGGATAAG TERM 354 302431 - 302414 - f 95 -8.5 -4.89233 | opp_overlap 302407 302414, overlap 302401 302398 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA TERM 355 302414 - 302431 + F 95 -8.5 -4.87626 | opp_overlap 302414 302401 302398, overlap 302407 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA SpyM3_0261 302582 - 302824 + | hypothetical protein TERM 356 302946 - 302969 + F 100 -11.1 -4.82667 | opp_overlap 302946 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA TERM 357 302969 - 302946 - f 100 -11.1 -4.85782 | opp_overlap 302946 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA glr 303002 - 303796 + | glutamate racemase SpyM3_0263 303793 - 304779 + | fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein SpyM3_0264 304758 - 305279 + | putative phosphoesterase SpyM3_0265 305276 - 305737 + | CBS domain containing protein xerD 305734 - 306480 + | site-specific tyrosine recombinase XerD-like protein TERM 358 306984 - 306947 - g 70 -2.8 -5.03715 | opp_overlap 306958, overlap 306982 AGCAGTTTTAAAAAA CAACCATACAGTCATC GAGCGT GATGATTATAAGATTG AAGACATGATGGCTT scpA 306480 - 307184 + | segregation and condensation protein A scpB 307181 - 307732 + | segregation and condensation protein B SpyM3_0269 307852 - 308574 + | putative ribosomal large subunit pseudouridine synthase SpyM3_0270 308571 - 308834 + | hypothetical protein SpyM3_0271 309012 - 309560 + | 23S rRNA methyltransferase TERM 359 309565 - 309620 + F 100 -17.2 -2.8372 | opp_overlap 309565 309573, overlap 309573 AACTAAAATAATGGA CTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAA ATTTAGTCAAAGCTA TERM 360 309620 - 309565 - f 86 -12.8 -2.77539 | opp_overlap 309565 309573, overlap 309573 AACTAAAATAATGGA CTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAA ATTTAGTCAAAGCTA TERM 361 309573 - 309612 + F 100 -14.4 -4.17491 | opp_overlap 309565 309573, overlap 309565 TAATGGACTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 362 309612 - 309573 - f 78 -7.8 -4.15453 | opp_overlap 309573 309565, overlap 309565 TAATGGACTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 363 309835 - 309862 + F 89 -7.2 -5.21709 | CAATAACGACGGAAC TTCTTTCAATTT GAAA AAATTGGAGGAA TTTTTTAATGTCAAA SpyM3_0272 309870 - 310433 + | hypothetical protein TERM 364 310719 - 310731 + G 70 -3.4 -4.86621 | opp_overlap 310716 TATCTTATCAAATGG TGCT ATTGC AGCA TTTTTGATTACGACT SpyM3_0273 310435 - 311088 + | putative phosphatase TERM 365 311125 - 311174 + F 89 -8.9 -4.43879 | opp_overlap 311131 311134, overlap 311126 311131 GCTTATTTAAATCAT TTAGAATAACATTGGCAAGCA TCACCCCT TGATTGCCAGTGTTATTTTAG TTTTAGTTAGATGAT TERM 366 311126 - 311173 + F 83 -10.2 -3.25604 | opp_overlap 311131 311134, overlap 311125 311131 CTTATTTAAATCATT TAGAATAACATTGGCAAGCA TCACCCCT TGATTGCCAGTGTTATTTTA GTTTTAGTTAGATGA TERM 367 311131 - 311168 + F 83 -7.9 -4.72729 | opp_overlap 311131 311134, overlap 311126 311125 TTAAATCATTTAGAA TAACATTGGCAAGCA TCACCCCT TGATTGCCAGTGTTA TTTTAGTTTTAGTTA SpyM3_0274 311381 - 312301 + | hypothetical protein TERM 368 312443 - 312469 + G 76 -7.4 -4.22407 | ATGGAAATGATACTG CCTTTTTGGC ACAATTA GCTAAAAAGG TTTATGCTTTTGATG TERM 369 312843 - 312857 + G 75 -2.8 -5.2112 | opp_overlap 312843 TCAGCCTCTTAATCA GGTG AATACCC CACC TTTTTTAATCATGTT SpyM3_0275 312340 - 312894 + | SAM-dependent methyltransferase hlyX 313027 - 314361 + | putative hemolysin TERM 370 314356 - 314376 + F 100 -11.2 -4.7254 | opp_overlap 314356 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT TERM 371 314376 - 314356 - f 87 -11.2 -3.1994 | opp_overlap 314356 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT pflC 314439 - 315230 + | putative pyruvate formate-lyase activating enzyme TERM 372 315244 - 315260 + F 100 -10.9 -4.67556 | AAGAGCTGTTATAGG GTTGAGG TTT CCTCAAC TTTTTAAAGTATTAT TERM 373 315771 - 315756 - g 74 -4.7 -4.87803 | TATGTTTAAAGAAAA TGGCA TCGAGG TGCCA AAAGCGATTGCAGGG SpyM3_0278 315355 - 316296 + | putative manganese-dependent inorganic pyrophosphatase TERM 374 316339 - 316315 - f 71 -6.5 -4.11773 | opp_overlap 316315 316329 AAAGACGCTTTAAAA GGACTTGAT TTTTTTG ACCAAGTCC TTTTGTCACTCTTCT SpyM3_0279 316372 - 317025 + | hypothetical protein TERM 375 317032 - 317056 + T 100 -9.4 -4.7329 | opp_overlap 317032 GCACCATAGAAAAAA GCTAGGAACA AGGAC TGTTCTTAGC TTTTTGAGTGCTTTT TERM 376 317056 - 317032 - T 93 -7.9 -5.39721 | opp_overlap 317032 GCACCATAGAAAAAA GCTAGGAACAA GGA CTGTTCTTAGC TTTTTGAGTGCTTTT fhuG.1 318071 - 317070 - | putative ferrichrome ABC transporter (permease) fhuB 319120 - 318068 - | putative ferrichrome ABC transporter (permease) TERM 377 318305 - 318295 - G 75 -5.4 -4.77775 | AGCCGATAAAAGAAA TGCT TCC AGCA ATGGCTACAGCTGCT fhuD.1 320042 - 319110 - | putative ferrichrome ABC transporter (ferrichrome-binding protein) TERM 378 319747 - 319760 + g 76 -2.4 -5.46629 | opp_overlap 319741, overlap 319741 319744 TCTAAATCAGTTGCA GCAA CTTGCT TTGC TTTTTTTACAGTCTT fhuC.1 320850 - 320068 - | putative ferrichrome ABC transporter ATP-binding protein TERM 379 320794 - 320782 - G 80 -6.3 -4.70583 | TTCAGGAATATAAAA CGATA ATT TATCG ATGATGGTACGCTGT TERM 380 320996 - 320983 - R 87 -6.7 -5.40625 | opp_overlap 320983, overlap 320976 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 381 320983 - 320996 + r 85 -6.7 -5.2422 | opp_overlap 320983 320976 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 382 321085 - 321035 - R 73 -3.7 -5.0917 | overlap 321037 GTATTAAAAAAGAAA TATTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAACG TCAACATACTCTAGA TERM 383 321083 - 321037 - R 85 -8.5 -4.15047 | overlap 321035 ATTAAAAAAGAAATA TTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAA CGTCAACATACTCTA murE 322541 - 321096 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase SpyM3_0285 322629 - 324263 + | putative polysaccharide biosynthesis protein TERM 384 324281 - 324307 + F 91 -5.3 -5.84381 | gap 1, opp_overlap 324281 TAATGACACCAAGAA CGATTTCG-TGA GTGC TTATCGAAATCG TTTTTTTCTTAATGA upp 324431 - 325060 + | uracil phosphoribosyltransferase clpP 325283 - 325873 + | ATP-dependent Clp protease proteolytic subunit TERM 385 325885 - 325920 + F 74 -9.2 -3.01712 | opp_overlap 325891 325894, overlap 325891 ATAAAGAGGATCTCT GCAAAAGTATTCTAGA AACT TCTAGGATGCTTTTTC TCTTAGAAAGGAAAA TERM 386 325891 - 325914 + F 84 -6.8 -5.0916 | opp_overlap 325891 325894, overlap 325885 AGGATCTCTGCAAAA GTATTCTAGA AACT TCTAGGATGC TTTTTCTCTTAGAAA SpyM3_0288 326365 - 326640 + | hypothetical protein TERM 387 326646 - 326634 - f 81 -7.7 -4.40037 | AAACAACCATCAAAA GGGTT AAC AACCC CCTAGTTACTGATTA TERM 388 326813 - 326835 + F 70 -4.2 -4.7329 | gap 1, opp_overlap 326813, overlap 326832 TGGTCCTAAAATAGA GCACTG-CA AAGATA TGCCAGTGC TTTTTAGCTCATTTT tdk 326889 - 327524 + | thymidylate kinase SpyM3_0290 327542 - 328417 + | DNA polymerase III subunit delta' TERM 389 329289 - 329269 - g 81 -6.9 -4.67011 | opp_overlap 329269 AACGGCAGCTAAAAA TCCTTCC AAACAAA GGAAGGA TCACTTAGAAGGAAT SpyM3_0291 329081 - 329404 + | DNA replication intiation control protein YabA TERM 390 329456 - 329443 - g 86 -2.4 -5.88197 | opp_overlap 329443, overlap 329447 329448 TTAAAGACAAAAAAA CAAG CGGAAC CTTG TATTTGGTTCCAACC SpyM3_0292 329409 - 330272 + | putative tetrapyrrole methylase family protein SpyM3_0293 330299 - 330691 + | hypothetical protein TERM 391 330732 - 330696 - T 79 -9.7 -3.2313 | opp_overlap 330701, overlap 330701 TTTTAAACTAAGAGA GAAAAGACCATCAAT TGGATTT ATTGATGGTCTTTTA GGTGTTTAAATGATT TERM 392 330701 - 330727 + T 100 -9.6 -4.323 | opp_overlap 330696 330701 AACTAAGAGAGAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA TERM 393 330727 - 330701 - T 100 -9.6 -4.70453 | opp_overlap 330701, overlap 330696 AACTAAGAGAGAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA SpyM3_0294 331367 - 330738 - | putative copper homeostasis protein TERM 394 331182 - 331171 - G 73 -5.8 -4.60797 | TCGTTATAGACAAAA TCGC CACC GCGA GGTCGAATCATGGTC TERM 395 331629 - 331591 - H 71 -3.1 -5.06451 | overlap 331623 331624 331625 TAGCATTTTAAAAAA GCCCCCTTTTTTTGTGA AATGA TGACCAAAAACGGGCGC CTCACGCCTAAAACA SpyM3_0295 331665 - 332021 + | putative arsenate reductase TERM 396 332027 - 332084 + T 100 -11.7 -4.62471 | gap 1, opp_overlap 332022 332042, overlap 332031 332042 TTTAGGATAATGCGA CAAAGTCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGA-TCTG TTTTTAGACATTAGA TERM 397 332031 - 332082 + T 100 -13.4 -3.92577 | gap 1, opp_overlap 332022 332042, overlap 332027 332042 GGATAATGCGACAAA G-TCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGATC TGTTTTTAGACATTA TERM 398 332042 - 332070 + T 88 -7.5 -5.08169 | opp_overlap 332042, overlap 332031 332027 CAAAGTCTCAAAAAA GGACAAGGC AACATTATAAC GCCTTGTCC TTTTTTGGGATCTGT TERM 399 332070 - 332042 - T 100 -10.3 -5.07107 | opp_overlap 332031 332027 332042 CAAAGTCTCAAAAAA GGACAAGGCAACA TTA TAACGCCTTGTCC TTTTTTGGGATCTGT exoA 332922 - 332095 - | putative 3'-exo-deoxyribonuclease TERM 400 333184 - 333173 - g 73 -2.2 -5.27923 | CAATGGCACAAAAAA CAGT CATC ACCG AAGAAACAACCGATT lctO 333160 - 334341 + | L-lactate oxidase TERM 401 334383 - 334354 - f 77 -5.1 -5.12474 | gap 1, opp_overlap 334354 TAGAACAGACAAAAA CCTCTGCTATCATG TCA CA-AATAGTAGAGG TTTTACACTGCAAAA prtS 334685 - 339553 + | putative cell envelope proteinase TERM 402 339553 - 339539 - f 83 -5 -5.44119 | TTTAGCCGAAAAAAA TCAACC AAA GATTGA TAACAAAGCGCAAAG TERM 403 339719 - 339681 - f 100 -20.6 -4.21945 | opp_overlap 339681 339683 339691, overlap 339683 339691 AGGAACAGACATAAA GACCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 404 339681 - 339719 + F 100 -20.6 -3.87505 | opp_overlap 339681 339683 339691, overlap 339683 339691 AGGAACAGACATAAA GACCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 405 339683 - 339717 + F 100 -23.2 -3.51879 | opp_overlap 339683 339681 339691, overlap 339681 339691 GAACAGACATAAAGA CCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGG TGTTATTGTCGTGTG TERM 406 339717 - 339683 - f 100 -23.2 -3.6979 | opp_overlap 339681 339683 339691, overlap 339681 339691 GAACAGACATAAAGA CCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGG TGTTATTGTCGTGTG TERM 407 339691 - 339709 + F 100 -13.2 -4.57533 | opp_overlap 339691 339683 339681, overlap 339683 339681 ATAAAGACCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 408 339709 - 339691 - f 100 -13.2 -4.59207 | opp_overlap 339683 339681 339691, overlap 339683 339681 ATAAAGACCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 409 340208 - 340180 - f 72 -5.9 -4.41633 | TAGGCTCAAAAATAA GGCATAGAATTCC AAA GGAAGTCGCTGCC GTGAGCACAACCTAA TERM 410 340262 - 340276 + F 100 -7.2 -5.86976 | opp_overlap 340262, overlap 340257 TTCTGCAATTTGAAA TACTGA ATT TCAGTA TTTTTTCTTTTGTAA SpyM3_0299 340301 - 341032 + | hypothetical protein metG 341275 - 343272 + | methionyl-tRNA synthetase TERM 411 343295 - 343318 + F 89 -6.8 -5.64006 | opp_overlap 343295 CTATTAATCAAAAAA CCTAAGCA AGAACATG TGCTTAGG TTTTTTTGATTGCCT TERM 412 343318 - 343295 - f 85 -6.8 -5.30155 | opp_overlap 343295 CTATTAATCAAAAAA CCTAAGCA AGAACATG TGCTTAGG TTTTTTTGATTGCCT TERM 413 343526 - 343511 - f 72 -6.2 -4.37092 | opp_overlap 343511 ATGGTTTTTATAAAA GTTAAG CATG CTTAAC TTTAGCCAAACAAAA TERM 414 343561 - 343544 - f 73 -7 -4.07285 | overlap 343542 TAGCCAAACAAAAGA GGACAC TAGAGC GTGTCC CACAAGACAGTTGAG nrdF 343766 - 344779 + | ribonucleotide-diphosphate reductase subunit beta nrdI 344783 - 345271 + | ribonucleotide reductase stimulatory protein nrdE.2 345238 - 347418 + | ribonucleotide-diphosphate reductase subunit alpha TERM 415 347483 - 347510 + T 100 -10 -5.42259 | opp_overlap 347483 347485 347488 CGCTCGACCATTCAA GACAAGCAAG CATCAGCT CTTGCTTGTC TTTTTTTGAGCATCA TERM 416 347510 - 347483 - T 77 -10 -3.09516 | opp_overlap 347483, overlap 347485 347488 CGCTCGACCATTCAA GACAAGCAAG CATCAGCT CTTGCTTGTC TTTTTTTGAGCATCA TERM 417 347541 - 347553 + T 77 -4.8 -5.1861 | opp_overlap 347541 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTGGTGATCGG TERM 418 347553 - 347541 - T 91 -4.8 -5.81032 | opp_overlap 347541 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTGGTGATCGG SpyM3_0304 348332 - 347580 - | hypothetical protein TERM 419 347816 - 347838 + g 72 -9.2 -3.36273 | TGCTCATAAAACTGT GCTTGGTGTA GCG TGTACCAAGC TTGATCTTACAAAGG TERM 420 347921 - 347889 - G 70 -9.2 -3.14602 | overlap 347887 GTTACGGTAGTAAGA CGTGAGATCAGCGT GTGAA ACACCGATATCACG CAAAAACGTCTCGTA SpyM3_0305 348790 - 349215 + | hypothetical protein TERM 421 349342 - 349362 + F 100 -13.3 -5.2696 | CCCTTTAGTAGTCAG GCCACCTCT GAT AGGGGTGGC TTTTTTGGGTTTTAG SpyM3_0306 349406 - 349657 + | hypothetical protein TERM 422 349725 - 349685 - T 83 -11.3 -2.75064 | opp_overlap 349688 349697, overlap 349682 349697 CTTCGCACGCAATCA GCAGCACAAAAAGCACC TGTCAGG GGTGCTTTTTGTGCTTT AGCCAACCTCATAGC TERM 423 349688 - 349722 + T 100 -18.1 -3.5393 | opp_overlap 349685 349682 349697, overlap 349697 CGCACGCAATCAGCA GCACAAAAAGCACCT GTCAG GGGTGCTTTTTGTGC TTTAGCCAACCTCAT TERM 424 349697 - 349713 + T 83 -5.8 -5.04325 | opp_overlap 349697 349685 349682, overlap 349688 TCAGCAGCACAAAAA GCACCT GTCAG GGGTGC TTTTTGTGCTTTAGC TERM 425 349713 - 349697 - T 75 -5.1 -4.93296 | opp_overlap 349688 349697, overlap 349685 349682 TCAGCAGCACAAAAA GCACC TGTCAGG GGTGC TTTTTGTGCTTTAGC SpyM3_0307 350352 - 349822 - | hypothetical protein SpyM3_0308 350711 - 350947 + | hypothetical protein fabG 350940 - 351638 + | 3-ketoacyl-(acyl-carrier-protein) reductase SpyM3_0310 351714 - 352673 + | NAD-dependent oxidoreductase TERM 426 352736 - 352759 + F 90 -8.1 -5.14965 | opp_overlap 352729, overlap 352737 TTGAAAGACGTGTTT TCACGAGGG TTAACC CCCTCGTGC TTTTTTGGTAAAAAT TERM 427 352737 - 352758 + F 90 -11.6 -3.68256 | opp_overlap 352729, overlap 352736 TGAAAGACGTGTTTT CACGAGGG TTAACC CCCTCGTG CTTTTTTGGTAAAAA glpT 353006 - 354343 + | putative glycerol-3-phosphate transporter TERM 428 354608 - 354621 + G 81 -6.7 -4.79223 | opp_overlap 354607 AGTATCTGGACTAAC CATGC TTGA GCATG TTTTTCGTAGTGTAA TERM 429 355604 - 355588 - g 70 -2.9 -5.02476 | ACATTGGTGAAAAAA CAAAGGC TGG GCATCTG ACTTATATTGGAAAC glmU 354516 - 355898 + | putative UDP-N-acetylglucosamine pyrophosphorylase SpyM3_0313 355929 - 356483 + | hypothetical protein SpyM3_0314 356483 - 356734 + | hypothetical protein pfs 356754 - 357449 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase SpyM3_0316 357600 - 357941 + | hypothetical protein TERM 430 357981 - 358018 + T 100 -24.5 -4.56597 | opp_overlap 357981 AGCCCCTCAAAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTGAGGAGACGC TERM 431 358018 - 357981 - T 100 -24.5 -5.40474 | opp_overlap 357981 AGCCCCTCAAAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTGAGGAGACGC SpyM3_0317 358687 - 358040 - | putative metal-dependent transcriptional regulator TERM 432 358471 - 358445 - G 71 -3.7 -4.90266 | CTGATGAATCAAAAA TACCTCAATCA AGCGG TGTTTGCGGTA GAGGTTAGCAACAAG TERM 433 359184 - 359171 - g 83 -5.3 -5.25735 | opp_overlap 359183 TCAAAAAACGAAAAA CAAAG ATTA CTTTG CCGTGTCTGATGGCA mtsA 358857 - 359765 + | putative metal binding protein of ABC transporter TERM 434 359774 - 359804 + F 83 -6.2 -5.05113 | AAAATAAGATAACAA TAAAGCACAGCGAT TTT AGTGTTGTGCTTTG TTTTATTTATGTAAA mtsB 359829 - 360554 + | ABC transporter ATP-binding protein mtsC 360555 - 361409 + | integral membrane protein MtsC, ABC transporter (permease protein) TERM 435 361457 - 361468 + T 74 -2.2 -5.43414 | AATAGTGGCAAATGA CATC AAAG GGTG TTTTTTATATGTCAT cypB 362363 - 361557 - | putative peptidyl-prolyl cis-trans isomerase SpyM3_0322 362667 - 364985 + | putative cell division protein TERM 436 365025 - 364983 - T 85 -12.2 -3.02698 | opp_overlap 364988, overlap 364988 GTATTGCAGACAAAC TAAAAGAACCTGACGTCTCA TGA TGAGATGTTAGGTTCTTTTT TTGATGATGTCAGGC TERM 437 365020 - 364988 - T 100 -12.1 -4.65153 | opp_overlap 364988, overlap 364983 GCAGACAAACTAAAA GAACCTGACGTCTCA TGA TGAGATGTTAGGTTC TTTTTTTGATGATGT TERM 438 364988 - 365020 + T 100 -16.5 -5.56568 | opp_overlap 364988 364983 GCAGACAAACTAAAA GAACCTGACGTCTCA TGA TGAGATGTTAGGTTC TTTTTTTGATGATGT SpyM3_0323 365406 - 365056 - | hypothetical protein TERM 439 365908 - 365867 - g 71 -6.5 -4.30844 | overlap 365870 ATTTCATCACTAAAA CACCACCAGCTGCTGTTCT TTTG AAAAAAGCTGCAGGTGTTG AAAAAGGATCAGGTA rplK 365653 - 366078 + | 50S ribosomal protein L11 TERM 440 366212 - 366197 - g 89 -5.4 -5.4477 | overlap 366202 AAATGGCTAAAAAAA GCAAAC AAAT GCTTGC TGCACTTGAAAAAGT TERM 441 366220 - 366202 - g 71 -5.3 -4.5187 | overlap 366197 GCTAAAAAAAGCAAA CAAATGC TTGCT GCACTTG AAAAAGTAGATAGCA rplA 366184 - 366873 + | 50S ribosomal protein L1 TERM 442 366897 - 366882 - f 89 -3.3 -5.80364 | ACTTTAAGAAAAAAA TTAGG GCATCG CCTAA TCATAGCAAAAAGAC TERM 443 366924 - 366948 + F 88 -5.8 -5.75599 | AGACAAATTTCTGAA GACAAATCTT CACTA GAGGTTTGTC TTTTTTTATGGTTTA pyrH 367196 - 367924 + | uridylate kinase frr 367954 - 368511 + | ribosome recycling factor SpyM3_0328 368749 - 369477 + | hypothetical protein TERM 444 369501 - 369481 - f 70 -3.9 -4.98436 | opp_overlap 369483, overlap 369482 369483 TTAATAGGATAAAAA TGCTTTGCC ACT GGCAAAGTT TTTTGTTACAATGAA TERM 445 369500 - 369482 - f 71 -7.4 -3.57977 | opp_overlap 369483, overlap 369481 369483 TAATAGGATAAAAAT GCTTTGCC ACT GGCAAAGT TTTTTGTTACAATGA TERM 446 369499 - 369483 - f 81 -10.9 -2.73702 | opp_overlap 369483, overlap 369482 369481 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 447 369483 - 369499 + F 100 -10.9 -5.46657 | opp_overlap 369483 369482 369481 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 448 369879 - 369869 - g 81 -5.4 -5.0707 | AAAGACAAAAAGAAA TTGC AGA GCAA TCAAAAGCAAACTTG msrA.2 369550 - 370059 + | methionine sulfoxide reductase A SpyM3_0330 370056 - 370271 + | hypothetical protein TERM 449 370301 - 370287 - f 85 -6.4 -5.252 | opp_overlap 370287 370299 TACGTGGATAAAAAA GAGTCA TAT CGACTC TTTTGAAGGGTTATC TERM 450 371157 - 371147 - g 70 -3.2 -4.91109 | overlap 371155 371156 GCCCCAGCAGAAAAA GAAG AAA CCTC TGCGCCAGCAGCACA SpyM3_0331 370427 - 371596 + | hypothetical protein TERM 451 371633 - 371616 - f 100 -7 -5.86061 | opp_overlap 371616 TGCTATCAAAAAAAA CTCACG TTTAGG CGTGAG TTTTTTGACAATTCT TERM 452 371616 - 371633 + F 88 -7.7 -5.06103 | opp_overlap 371616 TGCTATCAAAAAAAA CTCACGT TTAG GCGTGAG TTTTTTGACAATTCT TERM 453 372413 - 372425 + G 74 -6.3 -4.42806 | opp_overlap 372409 372404 AAACCATTGAAGAGT TCTTC TCA GAAGA TTTCTTTAAGAGTAA TERM 454 373648 - 373634 - g 85 -2.8 -5.71712 | overlap 373639 TCGGACATAAAAAAA TCAAGG ATA CCTTTA TCGAAGAATTGCTCA SpyM3_0332 371911 - 373683 + | 67 kDa Myosin-crossreactive streptococcal antigen TERM 455 373727 - 373704 - f 82 -9.7 -3.70149 | opp_overlap 373704 CTTAGAGTAGTTAAA GCTGATAAG TTTAGG CTTATCAGC TTTTTTGATGATTTA TERM 456 373704 - 373727 + F 100 -10.4 -5.243 | opp_overlap 373704 CTTAGAGTAGTTAAA GCTGATAAGT TTAG GCTTATCAGC TTTTTTGATGATTTA TERM 457 374061 - 374089 + G 71 -6.7 -4.12532 | GTGGGTCGTGGCATG GTGGTCAACACAT CAG ATGTGGTGACAGC TTTATCTATGGCAGA phoH 373980 - 374894 + | putative phosphate starvation-induced protein SpyM3_0334 374940 - 375515 + | hypothetical protein SpyM3_0335 375644 - 376171 + | putative metalloprotease TERM 458 376330 - 376340 + G 73 -5.4 -4.56187 | TTTTTAGCATTTCAG CCAT CGA ATGG TTATTTTTACTTCTA TERM 459 376423 - 376433 + G 73 -5.4 -4.57755 | TAGTTGATTTGGCTA GTGA CTA TCAC TTTTCTATGCTAGCT TERM 460 376468 - 376479 + G 70 -5.8 -4.40993 | ATGCTAAGGATATGG CAGC AGGT GCTG TTTTGATGATTTCTG dgk 376152 - 376559 + | putative diacylglycerol kinase era 376679 - 377575 + | GTP-binding protein Era SpyM3_0338 377550 - 378071 + | hypothetical protein TERM 461 378143 - 378158 + F 95 -9 -5.63103 | GAAAGACGATGTTTC GAGAGC TTAT GCTCTC TTTTTTTGCTTCCAA TERM 462 378197 - 378217 + F 73 -4.1 -4.90525 | overlap 378199 ATTAAGTCTGAATAA TTTTGTTAA ATG TTAACAGGA TTTTCTTTCCAATTG TERM 463 378691 - 378634 - f 100 -24.7 -4.18401 | opp_overlap 378639, overlap 378636 TCATATATCCTAAAA GAGAACGATGTCTTGTAAGTATTTTAG TCTT CGAAAATACTTACAAGACATCGTTCTA AGGCTTCTTCATTTG TERM 464 378689 - 378636 - f 100 -27.3 -3.6878 | opp_overlap 378639, overlap 378634 ATATATCCTAAAAGA GAACGATGTCTTGTAAGTATTTTAG TCTT CGAAAATACTTACAAGACATCGTTC TAAGGCTTCTTCATT TERM 465 378639 - 378686 + F 100 -23.2 -3.34947 | opp_overlap 378636 378634 TATCCTAAAAGAGAA CGATGTCTTGTAAGTATTTTAG TCTT CGAAAATACTTACAAGACATCG TTCTAAGGCTTCTTC TERM 466 379270 - 379323 + F 76 -4.3 -5.14985 | GTAAACTGAGTCATG GGAATAAATCTCTTTCTAGTA-AGT GTCGTA ACTCTACTATACAG-GATTTATTCC TTTTTGTGTGTTTAC SpyM3_0339 379537 - 379809 + | putative bacteriocin SpyM3_0340 379822 - 380022 + | hypothetical protein SpyM3_0341 380383 - 380511 + | hypothetical protein SpyM3_0342 380561 - 380842 + | hypothetical protein TERM 467 381582 - 381616 + F 87 -6.6 -5.46657 | TCATCTTTGCCAAAG CTCGTCATTTTATATG ATT TATATAGAATTACGGG TTTTTTGTTAGACTA TERM 468 381794 - 381806 + G 77 -7.7 -4.19953 | CAGATTCAGTCCATT CGTCT GAT AGACG TTTTGGAGTTGGCTA TERM 469 382445 - 382429 - g 81 -5.8 -5.08824 | overlap 382443 GTTTTATGGAAAAAA GGCTCC GTAAA AGAGCC TACTGAAGCCGATCA SpyM3_0343 381691 - 382755 + | hypothetical protein SpyM3_0344 382848 - 383246 + | hypothetical protein TERM 470 383578 - 383554 - T 100 -10.8 -5.44721 | opp_overlap 383552 ATTAGCTTAAAAAAA GAACACTACC GAAAT GGTAGTGTCC ACTGATTTTAGGAGA SpyM3_0345 383864 - 383595 - | hypothetical protein mutR 384935 - 385801 + | putative positive transcriptional regulator TERM 471 386633 - 386617 - g 77 -7.9 -4.30014 | opp_overlap 386616 TTTAGGAATTGAAAA GGGCGGT TCG ACCGTCC GTACTTACCGTAATG fpg 385973 - 386800 + | formamidopyrimidine-DNA glycosylase coaE 386797 - 387390 + | dephospho-CoA kinase SpyM3_0349 387580 - 389082 + | ATPase TERM 472 389231 - 389263 + G 70 -5.6 -4.37734 | CAAAATCTAAAAGTG GCTTGGCTTGGTAA CTTCT TTACTGGGGCAAGC TTTTCACTTGTTATG SpyM3_0350 389204 - 390397 + | putative multi-drug resistance efflux pump secG 390586 - 390822 + | preprotein translocase subunit SecG TERM 473 390827 - 390853 + F 89 -6.6 -5.60993 | opp_overlap 390826 CAAGTAAATAAGGAG TGAGCTTGAC AGAGTTA GTCTAGCTCA TTTTTTTATCAGCGA TERM 474 390972 - 391010 + F 71 -6.7 -4.10007 | gap 1, opp_overlap 390975, overlap 390996 CAAGTCCAATGTGAA CGACTTGGCTGCGGCCTT GGAG ATGGCTGGAGCTAAG-CG TTTTCCCAGCCTTAT TERM 475 391045 - 391031 - g 76 -7.2 -4.26076 | overlap 391034 CCAGCCTTATTAAAA CCATTT CCA AAATGG AAAGTCAGAGCCTTT TERM 476 391129 - 391117 - g 87 -3.4 -5.79595 | CGTGAAAAGAAAAAA GAAC CTACT GTTC AGGGTGTTTTTCGTG vacB 390994 - 393249 + | putative exoribonuclease R smpB 393252 - 393719 + | SsrA-binding protein TERM 477 393774 - 393746 - g 71 -6.8 -4.0251 | opp_overlap 393746 393752, overlap 393749 ATTATGATAACTAAA GGACAAGTTCGT TTGTT ACGAACTTATTC TTATGATAGCAACTT TERM 478 393752 - 393768 + G 71 -6.6 -4.05004 | opp_overlap 393749 393746, overlap 393746 ATAACTAAAGGACAA GTTCGT TTGTT ACGAAC TTATTCTTATGATAG TERM 479 394291 - 394279 - g 74 -9.1 -3.55563 | opp_overlap 394279 ACCTGATTCTGGAAA GGTGG TAG CCACC TATGATATTAGTCCT SpyM3_0354 393734 - 394444 + | putative glutamine cyclotransferase TERM 480 394529 - 394509 - T 93 -4 -5.9873 | opp_overlap 394509 394526 394527 TTAGCACAAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG TERM 481 394509 - 394529 + T 79 -4 -5.44119 | opp_overlap 394509, overlap 394526 394527 TTAGCACAAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG pcp 395208 - 394561 - | pyrrolidone-carboxylate peptidase SpyM3_0356 396184 - 395258 - | hypothetical protein SpyM3_0357 396867 - 396184 - | hypothetical protein SpyM3_0358 398064 - 397078 - | putative sugar transferase TERM 482 398114 - 398139 + r 95 -14.9 -3.29038 | opp_overlap 398114, overlap 398117 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 483 398139 - 398114 - R 100 -14.9 -5.42198 | opp_overlap 398114 398117 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 484 398117 - 398136 + r 90 -10.8 -3.77553 | opp_overlap 398114, overlap 398114 TAAAAAATAAAACAA CAGAAGCT TTAA AGCTTCTG TTGTTAATAGTATTA gloA 398526 - 398149 - | putative lactoylglutathione lyase SpyM3_0360 399202 - 398537 - | NAD(P)H-dependent quinone reductase pepQ 400336 - 399251 - | putative Xaa-Pro dipeptidase TERM 485 400391 - 400376 - H 79 -4 -5.40474 | ATTTTTTCAAAAAAA GCTTAA AAAA TCAAGC TTCGAGCTAATGTTT TERM 486 400923 - 400913 - g 79 -3.2 -5.37043 | ACTTGACAGAAAAAA TCCG GGC CGAA TTTTCACGCTCTCGT ccpA 400510 - 401511 + | putative catabolite control protein TERM 487 401596 - 401569 - f 84 -11.4 -3.01791 | opp_overlap 401575, overlap 401575 ACTGTTTCTTCAATA CTAAAATCAGCC TTAG GGCTGATTTTTG CATGTCTTAGTGAAA TERM 488 401590 - 401575 - f 89 -9 -4.4261 | opp_overlap 401575, overlap 401569 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA TERM 489 401575 - 401590 + F 93 -9 -4.74453 | opp_overlap 401575 401569 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA SpyM3_0363 401642 - 402640 + | putative sugar transferase SpyM3_0364 402642 - 403976 + | 1,2-diacylglycerol 3-glucosyltransferase TERM 490 404194 - 404221 + F 100 -10.6 -6.09196 | TAAGGTGGAACCACG CTGATTGCGTCC TTTG GGATGCGGTCAG TTTTTTTGTTTTGGA thrS 404398 - 406341 + | threonyl-tRNA synthetase TERM 491 406349 - 406378 + F 71 -6.5 -4.1673 | overlap 406355 AAGCTTAATCAATGG CAAAAAGAGGTCC TTAT GGGCTTCTTTTTC TTTCTTAAAAAATTA TERM 492 406355 - 406372 + F 84 -5.5 -5.47159 | overlap 406349 AATCAATGGCAAAAA GAGGTCC TTAT GGGCTTC TTTTTCTTTCTTAAA TERM 493 406527 - 406517 - g 78 -2.6 -5.42259 | CCACCTTCAAAAAAA TTTT TCC AAAA CCATTAAAGAGCCAG SpyM3_0366 406482 - 407474 + | putative ABC transporter, ATP-binding protein SpyM3_0367 407476 - 408294 + | hypothetical protein SpyM3_0368 408296 - 409081 + | ABC transporter permease TERM 494 409146 - 409170 + F 100 -12.2 -5.9873 | opp_overlap 409142 409146 TAGATAATGAAGGAA GGCAGCTGTT GTAAA AACGGCTGCC TTTTTTTTGTGATGG TERM 495 409170 - 409146 - f 81 -10 -3.49135 | opp_overlap 409146, overlap 409142 TAGATAATGAAGGAA GGCAGCTGTT GTAAA AACGGCTGCC TTTTTTTTGTGATGG TERM 496 409452 - 409503 + F 70 -8.4 -3.17391 | gap 1, opp_overlap 409441 409434 409458, overlap 409452 409454 409456 409458 409468 TAAAGACAAGGTTTG TCAATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTA ATTCTTTATTCTATA TERM 497 409452 - 409504 + F 74 -6.8 -4.31697 | gap 2, opp_overlap 409441 409434 409458, overlap 409452 409454 409456 409458 409468 TAAAGACAAGGTTTG TCA-ATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTAA TTCTTTATTCTATAT TERM 498 409454 - 409501 + F 83 -11 -3.12788 | gap 1, opp_overlap 409434 409458, overlap 409452 409452 409456 409458 409468 AAGACAAGGTTTGTC AATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTC TAATTCTTTATTCTA TERM 499 409456 - 409499 + F 90 -13.6 -3.10303 | gap 1, opp_overlap 409434 409458, overlap 409454 409452 409452 409458 409468 GACAAGGTTTGTCAA TACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTG TCTAATTCTTTATTC TERM 500 409497 - 409458 - f 85 -11.8 -3.02461 | gap 1, opp_overlap 409458 409456 409454 409452 409452 409468, overlap 409434 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 501 409458 - 409497 + F 93 -14 -3.08961 | gap 1, opp_overlap 409434 409458, overlap 409456 409454 409452 409452 409468 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 502 409468 - 409487 + F 70 -2.2 -5.35459 | gap 1, opp_overlap 409458, overlap 409458 409456 409454 409452 409452 CAATACCATAAAAAA GTTAAG-TG TCA CAGCTTAGC TTTTTTATGGTGTCT TERM 503 410881 - 410865 - gf 71 -8.7 -3.09327 | opp_overlap 410854, overlap 410853 GGACGCTATGGAATA GCTGCTA TAG CAGCAGC TGGTGGCCAAGGGTT SpyM3_0369 409827 - 410975 + | putative acetyl coenzyme A acetyltransferase TERM 504 410990 - 410980 - gf 93 -5.4 -5.63517 | TGCCCAAATAAAAAA GCTA TCG TAGC CGATCAGATAAGCTT TERM 505 411490 - 411480 - gf 89 -6.8 -5.27477 | opp_overlap 411480 ATGGCAAGCAAAAAA GGTG AGT CACC TTTACCTTTTACCGA SpyM3_0370 410932 - 412179 + | hypothetical protein TERM 506 412736 - 412765 + G 100 -13.7 -4.06419 | opp_overlap 412724 AGACGCCCAAGCTCT GGCCCTTTTTTTG AGGT CTAAAAAAGGGCC TTGTTTGTGGCGACA SpyM3_0371 412275 - 413270 + | hypothetical protein vicR 413432 - 414142 + | two-component response regulator TERM 507 414426 - 414416 - g 87 -3.2 -5.7946 | overlap 414399 TGCCCAAGAAAAAAA TCGC TTG GCAA GTATTTTGGCTTATA TERM 508 415398 - 415430 + G 75 -10 -3.23274 | overlap 415403 415405 ATCTGGGCTAAGAGT GACTATGGTAAAGG ATCGA CCTTTACTATTGTC TTGCCTTATGAAAAA TERM 509 415457 - 415446 - g 72 -4.4 -4.72272 | TTGCCTTATGAAAAA GATG CAGC CATC TATGAAGAATGGGAG vicK 414135 - 415487 + | two-component sensor histidine kinase vicX 415491 - 416300 + | VicX protein TERM 510 416362 - 416330 - f 73 -9.2 -2.87362 | opp_overlap 416330, overlap 416329 416332 AGAGAATATGCAAAG TAGCGCTGATTGGT GATAT ACCAGTCAGGGCTA TTTTTTGATGTCTTA TERM 511 416330 - 416362 + F 100 -12.1 -5.27399 | opp_overlap 416330 416329 416332 AGAGAATATGCAAAG TAGCGCTGATTGGTG ATA TACCAGTCAGGGCTA TTTTTTGATGTCTTA TERM 512 416544 - 416599 + F 70 -7.2 -3.86903 | gap 2, opp_overlap 416544, overlap 416543 CTAAAAACAAAATAG CTCTATACTATCTGTAGTGGGACTGT AGTGGG AAATTCCC-CT-CAGATAGTGTAGAG TCTTTTGATTGTATG TERM 513 416692 - 416665 - f 73 -4.2 -4.85267 | opp_overlap 416665 ATAAATCACGAAAAA TCCACTTAGA GTCGGTTT TCTAGGTGGA TTTTTGGTATACTAA TERM 514 416665 - 416692 + F 83 -7.1 -4.82667 | opp_overlap 416665 ATAAATCACGAAAAA TCCACTTAGAG TCGGTT TTCTAGGTGGA TTTTTGGTATACTAA rnc 416743 - 417435 + | ribonuclease III TERM 515 419148 - 419136 - g 100 -5.5 -5.78622 | TTATTTGAAAAAAAA TCGCC AAG GACGA GCAACTTTTTTACCT smc 417436 - 420963 + | putative chromosome condensation and segregation SMC protein TERM 516 420980 - 420998 + T 95 -8.9 -5.52909 | opp_overlap 420980 TGACCAATTAAAAAA CAGAAGG CAGTT CCTTCTG TTTTTTTGGATGTTC TERM 517 420998 - 420980 - T 95 -8.9 -5.30155 | opp_overlap 420980 TGACCAATTAAAAAA CAGAAGG CAGTT CCTTCTG TTTTTTTGGATGTTC TERM 518 421098 - 421123 + T 100 -12.7 -4.71061 | opp_overlap 421098 TAGAGTACAAAGAAA GCCTTGGAAAT AGCA GTTTCCAAGGC TTTTTAGCTGTCGAT TERM 519 421123 - 421098 - T 100 -12 -4.60949 | opp_overlap 421098 TAGAGTACAAAGAAA GCCTTGGAAA TAGCAG TTTCCAAGGC TTTTTAGCTGTCGAT SpyM3_0377 422079 - 421228 - | putative positive transcriptional regulator TERM 520 422150 - 422104 - H 71 -3.3 -5.06414 | gap 1, overlap 422108 CTTTCCCAACAAAAA TCAATTCCGTTTTTTTTTTATT GTAC AATAAATA-AAAACGGAAAGGA AGTCCACTTATGAAG TERM 521 422146 - 422108 - H 73 -7.1 -3.9407 | gap 1, overlap 422104 CCCAACAAAAATCAA TTCCGTTTTTTTTTTATT GTAC AATAAATA-AAAACGGAA AGGAAGTCCACTTAT TERM 522 422236 - 422253 + H 75 -8.5 -3.43109 | opp_overlap 422236, overlap 422234 TTGGTGGGTAAGTTA CTTAGGT GTAT ACCTAAG TCTTTAGATACTCTA TERM 523 422253 - 422273 + H 89 -11.3 -3.3854 | opp_overlap 422253, overlap 422234 TAGGTGTATACCTAA GTCTTTAGA TAC TCTAAAGAC TTATAGGTAATGGTT TERM 524 422273 - 422253 - H 84 -11.3 -3.12668 | opp_overlap 422234 422253 TAGGTGTATACCTAA GTCTTTAGA TAC TCTAAAGAC TTATAGGTAATGGTT aroE.2 422354 - 423226 + | shikimate 5-dehydrogenase SpyM3_0379 423223 - 424059 + | hypothetical protein SpyM3_0380 424061 - 424795 + | hypothetical protein SpyM3_0381 424788 - 425774 + | hypothetical protein SpyM3_0382 425784 - 426983 + | S-adenosylmethionine synthetase SpyM3_0383 426967 - 427935 + | hypothetical protein SpyM3_0384 427990 - 428979 + | hypothetical protein TERM 525 429309 - 429299 - f 86 -5.4 -5.61596 | ATGGTTAGAAAAAAA TCCT AGT AGGA CTGCAATCGAAGATG SpyM3_0385 429671 - 430828 + | UDP-glucose 6-dehydrogenase TERM 526 431240 - 431253 + G 70 -3.1 -4.9218 | ACTAATGTTATCTTG GCATT TATG AGTGC TTTTTCTAGTCCATC SpyM3_0386 430946 - 432121 + | putative efflux protein TERM 527 432171 - 432212 + T 93 -4.5 -6.02919 | opp_overlap 432170 432171 TTTTTCAAAGTAAAG GCACTAAGTTGATCTGA CTTACACA TCTTATCAACTCAGTGC TTTTTTTATTTCTAG SpyM3_0387 432433 - 432224 - | hypothetical protein SpyM3_0388 432713 - 432423 - | hypothetical protein SpyM3_0389 434080 - 432710 - | hypothetical protein TERM 528 433125 - 433147 + g 76 -3.4 -5.31275 | opp_overlap 433124 433125, overlap 433127 CGTTCAGTTGAGAAT TCGGAATCTA AAA TAGTTTCCAA TTTTTTGTGGTAAGC TERM 529 433310 - 433336 + g 100 -15.3 -5.30199 | AAGACTGCTTTCTAA CTCCAGCTTAG TATTT CTAAGCTGGAG TTTTTGTTGATTTTT SpyM3_0390 434301 - 434071 - | hypothetical protein TERM 530 434238 - 434264 + g 79 -5.2 -5.14965 | gap 1 TTTTGATTTCATTTA GCACTCTAGGT AAATAG GCC-AGAGTGC TTTTTTGATAGGAGT SpyM3_0392 435194 - 434301 - | hypothetical protein SpyM3_0391 435210 - 435386 + | hypothetical protein TERM 531 435702 - 435689 - g 77 -8.1 -4.1964 | TTGAAGATGCGAAAA CTGGC AACC GCCAG GATGTCAGAGAATTT SpyM3_0393 435442 - 435744 + | hypothetical protein SpyM3_0394 435744 - 436049 + | hypothetical protein TERM 532 436345 - 436362 + F 86 -5.5 -5.60993 | opp_overlap 436356 AGAAATATACCGAAA GCACTTC AAAG GGGGTGC TTTTTTTGTACCCCA TERM 533 436440 - 436424 - f 77 -5.1 -5.10208 | TAATTTGAAGAAAAA GGGCT AGAGATA AGCCC CAAAACAGTTATGAA TERM 534 436687 - 436669 - g 77 -6.1 -4.6575 | overlap 436661 ATAGAAATCATAAAA TGTCTTT ATGAA AAAGACA AAATAAATATGGAAC SpyM3_0395 436504 - 436860 + | hypothetical protein TERM 535 437160 - 437150 - g 78 -4 -5.31158 | TAAAAAAATCAAAAA GTTT TTT AAAC ATGAATTATATTCGA SpyM3_0396 436974 - 437273 + | hypothetical protein TERM 536 437435 - 437403 - T 95 -8.7 -5.14563 | gap 1, opp_overlap 437403 GTCTCTACTAAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT TERM 537 437403 - 437435 + T 89 -8.7 -4.44187 | gap 1, opp_overlap 437403 GTCTCTACTAAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT SpyM3_0397 438451 - 437648 - | transposase TnpA TERM 538 438466 - 438442 - G 82 -8.6 -4.24204 | opp_overlap 438444 GATTGACACGTAAAA CACGACACAA GGTTG TTGTGGCGTG TTCAAAGCGTAACCG SpyM3_0398 438819 - 438499 - | transposase TnpA (fragment) TERM 539 438899 - 438928 + H 83 -5.8 -5.03314 | AGTTCACTTCAAAAA CGGTCAGGTTAT CGAAAT ATAATCTGGCTG TTTTTTACGAATGGA TERM 540 439817 - 439791 - g 80 -11 -3.38281 | overlap 439786 439794 CTACGGAAAATGCAA GACCTGAAATCA AAG TGATTTCAGACC AAGTCATTGGCCACT TERM 541 439814 - 439794 - g 79 -11.3 -2.54586 | overlap 439791 439786 CGGAAAATGCAAGAC CTGAAATCA AAG TGATTTCAG ACCAAGTCATTGGCC SpyM3_0399 439079 - 439876 + | hypothetical protein SpyM3_0400 439880 - 440704 + | hypothetical protein TERM 542 440814 - 440792 - g 76 -7.1 -4.14627 | overlap 440793 440805 TTTTGACAGAAACAA CTCAGAAAG AGGAG CTTTCTGAA AAAGCCAATGAGCAA TERM 543 441362 - 441346 - g 79 -5.1 -5.17744 | overlap 441348 ACAGATCAAGAAAAA TACAAGC GTA GCTTGAA AAAAACGCGGACTGG TERM 544 441360 - 441348 - g 77 -7.7 -4.20491 | overlap 441346 AGATCAAGAAAAATA CAAGC GTA GCTTG AAAAAAACGCGGACT ftsY 440704 - 442254 + | putative signal recognition particle-docking protein FtsY TERM 545 442290 - 442263 - T 100 -8.4 -5.88565 | opp_overlap 442263 TTTATAAGAAAAAAA CCAGTCTTGTTC AACA GAACGAGGCTGG TTTTTAAGTAAGTCA TERM 546 442263 - 442290 + T 100 -12.8 -4.67353 | opp_overlap 442263 TTTATAAGAAAAAAA CCAGTCTTGTTC AACA GAACGAGGCTGG TTTTTAAGTAAGTCA SpyM3_0402 443675 - 442308 - | putative drug resistance protein (transporter) TERM 547 443424 - 443414 - G 72 -4.6 -4.81249 | TGCCAAATGTAAAAA GACC TGT GGCC ATAAAAAAGAGGGGT TERM 548 443618 - 443638 + g 85 -8.3 -4.43397 | overlap 443619 AAAAACCAATGAGTG CTATGGCGA TAA TCGCCATAA TTGTTTGTTTTGAAA TERM 549 443619 - 443637 + g 83 -11.8 -3.24954 | overlap 443618 AAAACCAATGAGTGC TATGGCGA TAA TCGCCATA ATTGTTTGTTTTGAA TERM 550 444773 - 444758 - g 89 -5.4 -5.39721 | opp_overlap 444758 TGAGGAGATAAAAAA GCGGTA CAAC TACCAC CTTAATTCAAGCGAA bglG 444003 - 444845 + | putative transcription antiterminator TERM 551 444932 - 444910 - g 80 -10.6 -3.31416 | opp_overlap 444911, overlap 444905 AAAACAAATATTCAA CGTGTGACAC ACT GTGTAACACG TCTACGCTTAGTACT TERM 552 445911 - 445889 - g 73 -5.5 -4.65032 | opp_overlap 445902 CAAAGCAGAAACAAA CACGTCAAG TTGCC CTTGCCGCG GGGATTTCAGCTTTG TERM 553 446457 - 446445 - g 86 -7.7 -5.00616 | TGTTGCCTTAAAAAA CACAC GTG GTGTG GAAGTCTTGATTCAT SpyM3_0404 444847 - 446709 + | PTS system, beta-glucoside-specific IIABC component TERM 554 447310 - 447300 - g 76 -2.4 -5.38839 | GACAGAAAAAGAAAA GCTG AGC CTGC AAGATTTATACCAAG bglA.1 446728 - 448152 + | 6-phospho-beta-glucosidase TERM 555 448210 - 448236 + T 95 -8.9 -5.54885 | opp_overlap 448210 GATAAAACGCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT TERM 556 448236 - 448210 - T 83 -6.7 -4.89729 | opp_overlap 448210 GATAAAACGCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT SpyM3_0406 449066 - 448251 - | hypothetical protein SpyM3_0407 449968 - 449066 - | hypothetical protein TERM 557 449935 - 449920 - G 71 -4 -5.00642 | overlap 449922 449927 TAATGGACATAAAAA TCGCAA ACCA TTGCAA GACACTGGGAGGAAG TERM 558 450028 - 449996 - H 71 -5.6 -4.50976 | gap 1, opp_overlap 450018, overlap 449998 449999 450001 TTCTAGATGATAAAA GAGGAGGCTGAAACA CGAA TGTT-CAGCCTCGAC TGATACGTTTTGTTA TERM 559 450025 - 449999 - H 79 -10.3 -2.91099 | gap 1, opp_overlap 450018, overlap 449998 449996 450001 TAGATGATAAAAGAG GAGGCTGAAACA CGAA TGTT-CAGCCTC GACTGATACGTTTTG SpyM3_0408 450102 - 450299 + | hypothetical protein TERM 560 450337 - 450353 + F 71 -3 -5.05153 | AACAATGCCAAAACG GAAGTG TTGTT TACTTC TTTCTTTTTTAAAAT SpyM3_0409 450505 - 452637 + | putative transcriptional regulator TERM 561 452734 - 452754 + GF 75 -6.9 -4.11394 | TGGCGGTCGCTTTTT TCCAAAAGA TGG TCATTTGGA TTTTAACCCTAGGAT TERM 562 452984 - 452955 - gf 76 -10.1 -2.84687 | opp_overlap 452964, overlap 452964 CTAATCATCATTATA GTTGCCAAACCTG TGGG CAGGTTTATCAAC GAAAAAGGCGTATCA SpyM3_0410 452579 - 453061 + | hypothetical protein TERM 563 453052 - 453067 + F 79 -5.4 -5.07652 | opp_overlap 453052 453053, overlap 453047 453053 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA TERM 564 453067 - 453052 - f 77 -3.2 -5.47821 | opp_overlap 453047 453052 453053, overlap 453053 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA SpyM3_0411 453125 - 453397 + | hypothetical protein TERM 565 453482 - 453517 + F 100 -10.6 -4.7629 | overlap 453489 TTGATATGTAAGTAA GCGAAGGGTCTTATCA GCTA TGATAAGGCTTTTTGC TTTTTGACTTAGTAA TERM 566 453489 - 453510 + F 90 -8.1 -5.18355 | overlap 453482 GTAAGTAAGCGAAGG GTCTTATCA GCTA TGATAAGGC TTTTTGCTTTTTGAC ptsK 453702 - 454694 + | HPr kinase/phosphorylase lgt 454691 - 455470 + | prolipoprotein diacylglyceryl transferase SpyM3_0414 455492 - 455899 + | hypothetical protein TERM 567 456010 - 456000 - g 73 -5.4 -4.57341 | AATCGTGCTGAAAAA GCTT ATC AAGC CTACAAAGAAAGTCC TERM 568 456201 - 456187 - g 77 -5 -5.00616 | CTTTCGTGCAAAAAA CAAAAG AAA CCTTTG CCGAAGTTGAAGCGA SpyM3_0415 455892 - 456320 + | hypothetical protein TERM 569 456412 - 456427 + T 95 -3.3 -6.20267 | ACTGAAGAAGGGGGG GATTG TGGCTT CAATC TTTTTTTGTTTTTGG SpyM3_0416 456764 - 456480 - | hypothetical protein SpyM3_0417 456963 - 457889 + | putative protease SpyM3_0418 457991 - 459277 + | putative protease TERM 570 459293 - 459345 + F 100 -7.3 -5.77853 | gap 2, opp_overlap 459295 459312, overlap 459295 TAACAAGAAATACTA GAGGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCCTG TTTTTTTTGAAAATT TERM 571 459343 - 459295 - f 77 -9.9 -3.02508 | gap 2, opp_overlap 459293 459295, overlap 459312 ACAAGAAATACTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTGAAAA TERM 572 459295 - 459343 + F 100 -9.9 -4.52949 | gap 2, opp_overlap 459295 459312, overlap 459293 ACAAGAAATACTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTGAAAA TERM 573 459450 - 459426 - f 89 -6.6 -5.64274 | opp_overlap 459426 TGAGTCATAAAAAAA GTGAAAAAAA GATGA TTTTTTCCAC TTTAATTTCGAATAG SpyM3_0419 459487 - 459699 + | hypothetical protein TERM 574 460005 - 459980 - T 100 -14.9 -4.16842 | opp_overlap 459983 GCTACTGTTAATAAA CCAGTCTTCAT GGTA ATGAAGACTGG TTAGAGATAATAAAA TERM 575 459983 - 460002 + T 72 -9.4 -2.72661 | opp_overlap 459980 ACTGTTAATAAACCA GTCTTCAT GGTA ATGAAGAC TGGTTAGAGATAATA lysS 461571 - 460078 - | lysyl-tRNA synthetase TERM 576 460488 - 460500 + g 77 -6.3 -4.62069 | TGATGATATGTCCGA CACTT GTG AAGTG TTTTTCGAGTGGGAC TERM 577 461221 - 461244 + g 79 -5.2 -5.07107 | GACTTCGCCTTCAAC GCCGATAAAG TCGC CTAAATCGGC TTTTTTGAAGATTTC SpyM3_0421 461745 - 462647 + | hypothetical protein SpyM3_0422 463378 - 462755 - | hypothetical protein SpyM3_0423 464198 - 463719 - | putative transcriptional regulator TERM 578 464255 - 464232 - R 93 -7.6 -5.56264 | opp_overlap 464232 TCTAAACATAAAAAA TGGTATAACA ACAT TATTATACCA TTTTTTTAATGTAAG TERM 579 464232 - 464255 + r 86 -5.4 -5.58454 | opp_overlap 464232 TCTAAACATAAAAAA TGGTATAACA ACAT TATTATACCA TTTTTTTAATGTAAG SpyM3_0424 464851 - 464288 - | hypothetical protein TERM 580 464879 - 464858 - R 90 -8.1 -5.36441 | opp_overlap 464856 TGGTGACATAAAAAA CTCCTTTTG TGCA CAAAAAGAG TATCGCTTTCCAATC TERM 581 465024 - 465044 + r 83 -8.3 -4.36127 | opp_overlap 465023 465024, overlap 465016 ATATGATGAGATAAT CTCCTTGTC AAG GATAAGGGG TTTTAAATTATTGAC TERM 582 465117 - 465098 - R 85 -4.3 -5.75599 | opp_overlap 465098 TAAACTATAAAAAAA GATTAGC CATGAT GCTAACC TCTTAATTGTTGGAG SpyM3_0425 465968 - 465120 - | N-acetylmuramoyl-L-alanine amidase TERM 583 466506 - 466516 + G 73 -5.4 -4.6265 | CCTTGGGTCTTTTGG CAAG TTA CTTG TTTTGTGCTTGTTCT SpyM3_0426 466293 - 466796 + | hypothetical protein SpyM3_0427 466780 - 467163 + | hypothetical protein TERM 584 467211 - 467170 - T 100 -20.7 -2.8742 | opp_overlap 467175 467180, overlap 467173 467180 TTTAAATAGTAACTA TAATATAAAATAGACTTGG CACG CCAAGTCTATTTTATATTA ACCAAGAAGTGCTTT TERM 585 467208 - 467173 - T 100 -18 -3.57161 | opp_overlap 467175 467180, overlap 467170 467180 AAATAGTAACTATAA TATAAAATAGACTTGG CACG CCAAGTCTATTTTATA TTAACCAAGAAGTGC TERM 586 467175 - 467206 + T 100 -16.2 -3.01791 | opp_overlap 467173 467170 467180, overlap 467180 ATAGTAACTATAATA TAAAATAGACTTGG CACG CCAAGTCTATTTTA TATTAACCAAGAAGT TERM 587 467201 - 467180 - T 100 -11.7 -4.76193 | opp_overlap 467175 467180, overlap 467173 467170 AACTATAATATAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA TERM 588 467180 - 467201 + T 100 -11.7 -4.66537 | opp_overlap 467180 467173 467170, overlap 467175 AACTATAATATAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA SpyM3_0428 467688 - 467209 - | putative glutathione peroxidase pepF 469480 - 467681 - | putative oligoendopeptidase F TERM 589 467958 - 467946 - G 70 -9.1 -3.1876 | AAGCCCATGTAGTAA TGCGC TTG GCGCA TCCAGGTAAGAGCTG ppc 469640 - 472438 + | phosphoenolpyruvate carboxylase TERM 590 473319 - 473339 + G 80 -4.7 -5.25656 | overlap 473321 473323 CCTGTTTTTGGCTAT GTCGCTAAA CGT TTTAGTGCC TTTTTTAATCCTTTT ftsW 472608 - 473882 + | putative cell division protein TERM 591 473917 - 473883 - f 100 -19 -3.69338 | opp_overlap 473893, overlap 473893 AAGCAATTTCAATAA TATTCTAAAATCTCCT TTA AGGAGATTTTAGAATA TAGACAATCCCAGTT TERM 592 473893 - 473907 + F 85 -8.6 -4.16943 | opp_overlap 473883 473893 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAGAC TERM 593 473907 - 473893 - f 85 -8.6 -4.21314 | opp_overlap 473893, overlap 473883 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAGAC tuf 474237 - 475433 + | elongation factor Tu TERM 594 475505 - 475489 - f 90 -11.5 -3.65314 | opp_overlap 475489 CTTAAGTTTGAAGAA GCCCCCA ATT CGGGGGC TTTTTGCTATCTTAA TERM 595 475489 - 475505 + F 100 -10.8 -4.87807 | opp_overlap 475489 CTTAAGTTTGAAGAA GCCCCC AATTC GGGGGC TTTTTGCTATCTTAA tpiA 475674 - 476432 + | triosephosphate isomerase TERM 596 476427 - 476485 + T 91 -13 -3.25942 | gap 1, opp_overlap 476433 476446 476483, overlap 476433 476446 TTGCTTGATTTCCTT -AACTAAGTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGACTTAACTC TTACTATGAGAGAAT TERM 597 476478 - 476433 - T 100 -22.4 -3.34013 | opp_overlap 476427 476433 476446, overlap 476446 GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGAC TTAACTCTTACTATG TERM 598 476433 - 476478 + T 100 -22.4 -3.21062 | opp_overlap 476433 476446, overlap 476427 476446 GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGAC TTAACTCTTACTATG TERM 599 476465 - 476446 - T 84 -6.5 -5.10497 | opp_overlap 476433 476427 476446, overlap 476433 AAGTCATCTAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT TERM 600 476446 - 476465 + T 84 -6.5 -5.10497 | opp_overlap 476446 476433, overlap 476433 476427 AAGTCATCTAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT murN 477766 - 476531 - | putative peptidoglycan branched peptide synthesis protein, alanine adding enzyme TERM 601 476729 - 476743 + g 70 -8.6 -3.41051 | CTTGTGAATTGCCTT GAGCAT AGC ATGCTC TTGTAATAGAGCTGG TERM 602 477331 - 477342 + g 73 -5.8 -4.58663 | opp_overlap 477319 AAACAGGTTCACCCT CAGG ATAG CCTG TTTTTAAACCGTCAT murM.1 478979 - 477753 - | putative peptidoglycan branched peptide synthesis protein, serine/alanine adding enzyme TERM 603 478143 - 478153 + g 79 -3.2 -5.50313 | TAAATCTTTTTGTAG CCGT GCA ATGG TTTTTTGATTTTCTG TERM 604 478230 - 478244 + g 95 -2.8 -6.09888 | overlap 478220 478219 TAAGGCTTTGTCCAA CTGTTG GAT CAAGAG TTTTTTTTGTTCAGG TERM 605 478353 - 478363 + g 79 -3.2 -5.52384 | AAGGATAATGCCTTT TCGA TTC TCGG TTTTTTTCATCAAGG SpyM3_0436 479788 - 478979 - | hypothetical protein TERM 606 479326 - 479340 + g 83 -7.2 -4.70887 | opp_overlap 479323 479326 CAGGTTCATCAATCA TCATCA TTT TGATGA TTTCTTTATTGGTCA TERM 607 479972 - 479945 - R 100 -14.4 -4.90266 | opp_overlap 479947 479952 TGTAGTAACTAAAAA GATTGAAGAAAG TACT CTTTCTTCAATC TTAGAATGGAGACAA TERM 608 479947 - 479970 + r 84 -11.2 -3.05844 | opp_overlap 479945, overlap 479952 TAGTAACTAAAAAGA TTGAAGAAAG TACT CTTTCTTCAA TCTTAGAATGGAGAC SpyM3_0437 480171 - 479938 - | hypothetical protein TERM 609 480184 - 480158 - G 70 -3.6 -4.86385 | overlap 480166 480173 AGGCTCAAAAATAAA GCATAGAATTCC AAA GGAAGTCGCTGC CATAAGCATCACCTA SpyM3_0438 481544 - 480243 - | hypothetical protein TERM 610 480556 - 480534 - G 76 -9.2 -3.75015 | ATAATCTGGATCAAA GCCAACTGAT TCG ACCAATTGGC GCAAGCGTTCTAACT TERM 611 481027 - 481015 - G 77 -4.9 -4.93296 | TTAGCAGCAGAAAAA TAAGA ATC TCTTA AAAGGTAATCCATAC SpyM3_0439 481626 - 482012 + | hypothetical protein TERM 612 482171 - 482196 + F 89 -7 -5.27335 | opp_overlap 482158 482191 482193 AATCTTAAACAGCGA GACTTGTTTA AGAAAA TAAACAGGTC TTTTTATTTGAACAA TERM 613 482229 - 482191 - f 81 -6.2 -4.87892 | opp_overlap 482171, overlap 482193 GTTTAAGAAAATAAA CAGGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACCAA GGAGGTACTAATTTG TERM 614 482227 - 482193 - f 93 -11 -4.04859 | opp_overlap 482171, overlap 482191 TTAAGAAAATAAACA GGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACC AAGGAGGTACTAATT pacL 482242 - 484923 + | putative calcium transporter TERM 615 484959 - 484936 - T 100 -14 -4.19472 | opp_overlap 484936 TAATAGACGCTAAAA GGTTTGAGAC AATT GTCTCAAACC TTTTTTTATAATCGT TERM 616 484936 - 484959 + T 100 -14 -5.67967 | opp_overlap 484936 TAATAGACGCTAAAA GGTTTGAGAC AATT GTCTCAAACC TTTTTTTATAATCGT regR 486002 - 485007 - | LacI family transcriptional regulator SpyM3_0442 487973 - 486066 - | hypothetical protein TERM 617 487857 - 487873 + g 70 -3 -5.14965 | AAAGGTATTGGTTAA GAGTAG GTCAG CTATTC TTTTTTGATCAGCAT TERM 618 488050 - 487999 - R 95 -8.9 -5.07652 | gap 1 CTTTCCAAAAGAAAA GAGACCTCATCATGTGCTTAGGAA CTATT TCCCTATGCTCATAAC-AGGTCTC TGTGAACCATTAAGC agaD 488881 - 488060 - | PTS system, N-acetylgalactosamine-specific IID component TERM 619 488836 - 488826 - G 73 -6.8 -4.24342 | opp_overlap 488826 488824 488828 TTTTGTAGGAAGAAA GCTC TCA GAGC TGTTTTGAGGTAATC agaW 489650 - 488868 - | PTS system, N-acetylgalactosamine-specific IIC component agaV 490157 - 489669 - | PTS system, N-acetylgalactosamine-specific IIB component TERM 620 489747 - 489737 - G 79 -6.8 -4.56597 | opp_overlap 489725 TTTTGGTGTTAAAAA CCAC TTG GTGG TCATGGGCTAAGCAA ugl 491392 - 490193 - | putative unsaturated glucuronyl hydrolase agaF 491829 - 491392 - | putative PTS dependent N-acetyl-galactosamine- and galactosamine IIA component TERM 621 492852 - 492866 + G 82 -6.4 -4.87665 | overlap 492854 GGACAACAGAAGACT TAGCTG GTC CAGCTG TTTTTCTAGCTAGCG TERM 622 492854 - 492864 + G 71 -6.8 -4.06182 | overlap 492852 ACAACAGAAGACTTA GCTG GTC CAGC TGTTTTTCTAGCTAG SpyM3_0448 492164 - 492958 + | gluconate 5-dehydrogenase TERM 623 493022 - 493009 - g 79 -6.7 -4.50193 | ATTAATTAATGAAAA TAGCC AAGC GGCTA AAAATGGTATTATTT SpyM3_0449 492983 - 493624 + | hypothetical protein kdgK 493653 - 494654 + | 2-dehydro-3-deoxygluconokinase kgdA 494659 - 495294 + | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 624 495935 - 495970 + G 73 -7 -4.20148 | opp_overlap 495969 CTCGAAGCGTCAGGA TGTTTTGTTGGCGTTG GAGA CAACGCAAATAAAAGA TTATTTTGAAATAAT TERM 625 495986 - 495969 - g 79 -5.7 -4.94962 | opp_overlap 495935 ACAACGCAAATAAAA GATTATT TTGA AATAATC CTAGCGCGTGAAGAT TERM 626 496112 - 496101 - g 75 -5.8 -4.74453 | GAAGACAGCCAAAAA GGCA TTGC TGCC GCCAAAGCGGCCAAT SpyM3_0452 495591 - 496241 + | hypothetical protein TERM 627 497204 - 497190 - g 70 -2.8 -5.10029 | overlap 497202 AGCAACCTCAAAAAA CACCTT ATA AACGTG GAAAAATTACACCTA SpyM3_0453 496937 - 498061 + | iron-sulfur cluster-binding protein TERM 628 498338 - 498320 - g 71 -6 -4.26079 | opp_overlap 498319 CTAAATGAGTTAAAA GGTAAGTA TGA TACTTTCC ATAATATGCAAGAAT TERM 629 498535 - 498516 - g 71 -7.2 -3.89524 | gap 1, overlap 498520 ATGCTATCTTAGAAA TCCATCCTG GTT CAGGA-GGA ACTGAAGCGCAAGAT prfB 498248 - 499228 + | peptide chain release factor 2 TERM 630 499619 - 499601 - g 80 -4.4 -5.21709 | opp_overlap 499601 499600 CGCCACATTAAAAAA CGCGTGCC AGA GGTACTCG ATTTAGTTGGCTTGA ftsE 499247 - 499939 + | putative cell-division ATP-binding protein ftsX 499932 - 500861 + | putative cell-division protein TERM 631 501084 - 501040 - T 100 -14.6 -4.90381 | opp_overlap 501041 501043 501051 501081 501083, overlap 501041 TTCAAGAGAAGAAAA GCACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTGT CATTAAAAATTTAGT TERM 632 501041 - 501083 + T 100 -19.5 -2.74514 | opp_overlap 501040 501041, overlap 501043 501051 501081 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGGTG TCATTAAAAATTTAG TERM 633 501083 - 501041 - T 100 -18.1 -3.53144 | opp_overlap 501041 501043 501051 501081, overlap 501040 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTG TCATTAAAAATTTAG TERM 634 501043 - 501081 + T 100 -16.3 -2.91467 | opp_overlap 501041 501040, overlap 501041 501051 AAGAGAAGAAAAGCA CCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGG TGTCATTAAAAATTT SpyM3_0457 501868 - 501170 - | putative metallo-beta-lactamase superfamily protein SpyM3_0458 502036 - 502800 + | acetoin reductase TERM 635 502817 - 502839 + F 100 -15 -5.61913 | opp_overlap 502814 502813 502811 AATGATTAATACTGA CACTGTGAGT TTC ACTCACAGTG TTTTTTATATTTCTT TERM 636 504091 - 504077 - g 79 -4.9 -5.04868 | opp_overlap 504077, overlap 504080 CGAAATCAAACAAAA GCAGC GCTTT GCCGC TTATTTTGAGCAGCT TERM 637 504474 - 504459 - g 72 -4.7 -4.73614 | TACTATCAAAATAAA GAGCA CCAGCT TGCTC ATGATTGGTCTCGTA dinG 502908 - 505409 + | bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon TERM 638 505396 - 505436 + F 100 -9.4 -4.74801 | opp_overlap 505394 505410, overlap 505397 TAGTAGAAACGGACT GTTTTTTGATATAATAGA AAGGA TCTATTATATCAGAAAAA TTTTTAATGGCGTTA TERM 639 505397 - 505435 + F 93 -12.9 -3.44158 | opp_overlap 505394 505410, overlap 505396 AGTAGAAACGGACTG TTTTTTGATATAATAGA AAGGA TCTATTATATCAGAAAA ATTTTTAATGGCGTT TERM 640 505522 - 505538 + F 77 -5.2 -4.8487 | AACTGTTCAAATGTT TTCGAA TTGTT TTCGAA TTGTTTTTTTGATAA TERM 641 505712 - 505699 - f 79 -5.3 -5.20216 | opp_overlap 505699 TAGATTATGAAAAAA TGATC TGTT GATCA TTAATTAATCTGAAG aspC 505755 - 506948 + | aspartate aminotransferase asnC 506969 - 508315 + | asparaginyl-tRNA synthetase TERM 642 508353 - 508319 - f 91 -11.8 -3.67112 | opp_overlap 508319 508327, overlap 508327 ATTAGACCCTAATAA TACAAAAAGTTCAT GTCATCT ATGAACTTTTTGTA TTGGTAAGAAGTGAG TERM 643 508319 - 508353 + F 91 -12.5 -3.14931 | opp_overlap 508319 508327, overlap 508327 ATTAGACCCTAATAA TACAAAAAGTTCATG TCATC TATGAACTTTTTGTA TTGGTAAGAAGTGAG TERM 644 508345 - 508327 - f 71 -3.2 -5.2015 | opp_overlap 508319 508327, overlap 508319 CTAATAATACAAAAA GTTCAT GTCATCT ATGAAC TTTTTGTATTGGTAA TERM 645 508327 - 508345 + F 73 -3.9 -5.1244 | opp_overlap 508327 508319, overlap 508319 CTAATAATACAAAAA GTTCATG TCATC TATGAAC TTTTTGTATTGGTAA SpyM3_0462 508729 - 509619 + | hypothetical protein SpyM3_0463 509760 - 510593 + | hypothetical protein SpyM3_0464 510590 - 511501 + | hypothetical protein TERM 646 511512 - 511535 + F 100 -10.4 -5.71712 | overlap 511533 TATAGAACATTTTTA TCGTATGAGC CTTT GTTCATACGA TTTTTTTGTCTAAAA pepD 511634 - 513031 + | putative dipeptidase TERM 647 513044 - 513063 + F 100 -10 -5.05782 | opp_overlap 513044 TAAAAGTGAAGCTAA GGCTGAGC AACT GCTTAGCC TTTTTTACGATAACT adcA 513183 - 514730 + | putative adhesion protein TERM 648 514745 - 514770 + F 100 -9.1 -5.38054 | opp_overlap 514745 ATCTTAACTCACTAA GCAAATCTTCT TTTA AGGAGGTTTGC TTTTTCTTTGTGGAG SpyM3_0467 514878 - 515600 + | GntR family transcriptional regulator TERM 649 515728 - 515750 + G 79 -4.8 -5.00884 | opp_overlap 515732, overlap 515748 515749 ATGACGTTTTTTGAC GAAACAAGAG ATT CTCTGGATTC TTTTTTAAAGAGAGT agaS 515620 - 516819 + | putative tagatose-6-phosphate aldose/ketose isomerase TERM 650 516879 - 516897 + T 95 -8.8 -5.53436 | opp_overlap 516879 AGGCCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT TERM 651 516897 - 516879 - T 100 -11 -5.46706 | opp_overlap 516879 AGGCCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT rpmE2 517176 - 516916 - | 50S ribosomal protein L31 type B SpyM3_0470 518232 - 517291 - | hypothetical protein TERM 652 517856 - 517868 + g 74 -9.1 -3.49653 | GCAATGATTTCACTT GCGCT AGA AGCGC TTGTGTCCACATAAT flaV 518626 - 519075 + | flavodoxin TERM 653 519092 - 519111 + F 83 -6.4 -4.92239 | ACTATTTAGTAAAAA TGTCAGGG GCTT CCTTGGCA TTTTTAGATTTTTAA SpyM3_0472 519250 - 519534 + | hypothetical protein SpyM3_0473 519527 - 520789 + | putative transmembrane protein TERM 654 520847 - 520823 - f 72 -5.8 -4.30719 | overlap 520825 TTTTGTTAGAATAAA TCTCGTGTGT AATGG ACACACAAAA ATTACGGCTAATCCG rplS 520904 - 521251 + | 50S ribosomal protein L19 TERM 655 521280 - 521308 + F 79 -10.5 -2.82635 | opp_overlap 521286, overlap 521286 GTAACGTAATAGAAT AAAAAAGACTAGA GTC TCTAGTCTTTTTA TGTCGTCGTGACAAT TERM 656 521286 - 521302 + F 100 -9.5 -5.01497 | opp_overlap 521286, overlap 521280 TAATAGAATAAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 657 521302 - 521286 - f 100 -9.5 -5.64304 | opp_overlap 521286 521280 TAATAGAATAAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 658 521581 - 521611 + F 73 -8.5 -3.17586 | opp_overlap 521588, overlap 521588 GGTCATTATTGTCAC TGAAAAAGCCTTT ACATC AAAGGCTTTTTTG TATTACTCAATTAAT TERM 659 521604 - 521588 - f 83 -7.3 -4.66163 | opp_overlap 521588 521581 ATTGTCACTGAAAAA GCCTTTA CAT CAAAGGC TTTTTTGTATTACTC TERM 660 521588 - 521604 + F 87 -6.6 -5.49569 | opp_overlap 521588, overlap 521581 ATTGTCACTGAAAAA GCCTTT ACATC AAAGGC TTTTTTGTATTACTC SpyM3_0475 522267 - 522836 + | putative hydrolase TERM 661 523784 - 523774 - g 82 -4 -5.42605 | CTAAGAAAAATAAAA TTCT TAA AGAA AATGAGGACAATTTG gyrB 522837 - 524789 + | DNA gyrase subunit B TERM 662 524858 - 524846 - f 80 -6.3 -4.77157 | overlap 524836 CGAATTGACTAAAAA TCATG ATG CATGA TGCCAACAGCTTTGT SpyM3_0477 525157 - 526881 + | septation ring formation regulator EzrA TERM 663 526891 - 526909 + T 95 -8.9 -5.17507 | opp_overlap 526891 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 664 526909 - 526891 - T 77 -8.9 -3.63627 | opp_overlap 526891 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 665 526977 - 526952 - T 71 -6.3 -4.25104 | TGTTTTTGACTAAAA TCTTCTTTTTA ATGA TCAAAAGAAGA AGTAGTAACAGTGTT TERM 666 527034 - 527047 + T 79 -5.3 -5.03747 | opp_overlap 527029, overlap 527028 TTTCAAAAATCTTTT CCAAA AGGA TTTGG TTTTTTCAGGAGTTT SpyM3_0478 527471 - 527013 - | hypothetical protein eno 527704 - 529011 + | phosphopyruvate hydratase TERM 667 529137 - 529167 + F 93 -14.2 -2.95896 | opp_overlap 529143, overlap 529143 GCAAAAGTTAAAGAA TAGAAAGCTTGGGA AAA TCCCAAGCTTTTTG CTTTCTAAATAGTAA TERM 668 529161 - 529143 - f 100 -13.2 -4.40333 | opp_overlap 529137 529143 GTTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA TERM 669 529143 - 529161 + F 100 -13.2 -5.04601 | opp_overlap 529143, overlap 529137 GTTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA sagA 529573 - 529734 + | streptolysin S associated protein TERM 670 529880 - 529926 + F 83 -9.7 -3.74693 | gap 1, opp_overlap 529889, overlap 529881 529883 529885 529889 TCTTGATGCTAGCGT C-TCAGGTAATTAGCAGGTACT AGAC AGTACCTGCTAATTACTATATG TTTAGTAAAATGAGA TERM 671 529881 - 529924 + F 95 -13.4 -3.4582 | opp_overlap 529889, overlap 529880 529883 529885 529889 CTTGATGCTAGCGTC TCAGGTAATTAGCAGGTACT AGAC AGTACCTGCTAATTACTATA TGTTTAGTAAAATGA TERM 672 529883 - 529922 + F 100 -16 -3.29972 | opp_overlap 529889, overlap 529881 529880 529885 529889 TGATGCTAGCGTCTC AGGTAATTAGCAGGTACT AGAC AGTACCTGCTAATTACTA TATGTTTAGTAAAAT TERM 673 529885 - 529920 + F 100 -20.8 -3.21269 | opp_overlap 529889, overlap 529883 529881 529880 529889 ATGCTAGCGTCTCAG GTAATTAGCAGGTACT AGAC AGTACCTGCTAATTAC TATATGTTTAGTAAA TERM 674 529889 - 529916 + F 100 -15.8 -3.40082 | opp_overlap 529889, overlap 529885 529883 529881 529880 TAGCGTCTCAGGTAA TTAGCAGGTACT AGAC AGTACCTGCTAA TTACTATATGTTTAG TERM 675 529916 - 529889 - f 100 -15.8 -3.05596 | opp_overlap 529889 529885 529883 529881 529880 TAGCGTCTCAGGTAA TTAGCAGGTACT AGAC AGTACCTGCTAA TTACTATATGTTTAG sagB 529956 - 530906 + | streptolysin S associated protein sagC 530903 - 531961 + | streptolysin S associated protein TERM 676 532967 - 532979 + GF 70 -4.1 -4.81851 | opp_overlap 532945 TGCAAATATTGAATG CGAAG AAC CTTTG TTTTTAGATTTAGAT TERM 677 533226 - 533241 + GF 71 -7.6 -3.67558 | TGGTACGTCACGCGA GTTCTG ATGC CAGAAC TTCTTGAAATGTGTA SpyM3_0483 531981 - 533339 + | hypothetical protein TERM 678 533819 - 533830 + GF 73 -2.2 -5.31877 | TAAATCACTTATTGA TGGG GAAA TCCA TTTTTTATGCTAAGT SpyM3_0484 533314 - 533985 + | hypothetical protein SpyM3_0485 533982 - 534665 + | hypothetical protein TERM 679 535051 - 535027 - g 86 -7.3 -5.0538 | opp_overlap 535031 GCTCAGCTTAAAAAA CAAGTTCTAAA AAG TTTAGAATTTG TGGGGCTACACTCCC SpyM3_0486 534688 - 535611 + | putative ABC transporter ATP-binding protein sagH 535620 - 536747 + | ABC transporter ATP-binding protein SpyM3_0488 536744 - 537862 + | putative ABC transporter ATP-binding protein TERM 680 537855 - 537868 + F 71 -5.3 -4.63932 | TATTAAAACCTACCA GACTA TAAT TAGTC TTTTGTTAAAAAATA TERM 681 537908 - 537946 + F 100 -9.1 -5.00412 | opp_overlap 537901, overlap 537896 TTAGCTAACTACCAG GTAGCCCTTTTATTG GCTTATATG CAATAAAAGGGTTGC TTTTTGCTTATATTT TERM 682 538153 - 538143 - f 79 -4 -5.52986 | opp_overlap 538143 ATGTTATTAAAAAAA GTTT TGA AAAC GTATTTATTTTATGA TERM 683 539656 - 539693 + G 77 -9.9 -3.44848 | overlap 539653 AGGGAAAGACCGTAT CGCGCCAGCCAATATTA TTGA TAATGATGGCTTGCGTG TGTTTGATCCAGAAG TERM 684 540076 - 540055 - g 74 -3.7 -5.05153 | ACCTGAAAAAACAAA CTTGCAAAA AGAC CTTAGCAAG TTAAGCATTGCTTCT TERM 685 540646 - 540666 + G 70 -9.7 -2.66316 | opp_overlap 540651, overlap 540643 540651 CACTTTTAAATCTGA GCAAAGACG TCA CGTCTTGGC TAATATGCTAGCACA SpyM3_0489 538433 - 541165 + | hypothetical protein SpyM3_0490 541443 - 541943 + | hypothetical protein TERM 686 541963 - 541984 + F 82 -4.3 -5.57729 | opp_overlap 541963, overlap 541968 GCATCATACTCAAAA GAGTTGGGT CAAT ACCCTTCTC TTTTTTATGTTGTTT ligA 542138 - 544096 + | NAD-dependent DNA ligase LigA SpyM3_0492 544110 - 545132 + | putative lipid kinase TERM 687 545250 - 545272 + F 88 -7.7 -5.20216 | TCAATTTATTCATAT GAGGGGCCT ATTTG AGGTCTCTC TTTTTTGATCATATG TERM 688 545309 - 545324 + F 74 -5.4 -4.67556 | AATGCCATGTTTTAG GGGTGT TATT ATACCC TTTTTGGAATCTTGT SpyM3_0493 545524 - 545721 + | F0F1 ATP synthase subunit C TERM 689 546092 - 546102 + G 73 -6.8 -4.21098 | opp_overlap 546092, overlap 546085 TGGACCTCGCCAACA GCCA ATC TGGC TTTTGACCTTGCTCT SpyM3_0494 545756 - 546472 + | F0F1 ATP synthase subunit A SpyM3_0495 546490 - 546984 + | F0F1 ATP synthase subunit B SpyM3_0496 546984 - 547520 + | F0F1 ATP synthase subunit delta SpyM3_0497 547536 - 549044 + | F0F1 ATP synthase subunit alpha TERM 690 549531 - 549555 + G 72 -4.4 -4.77759 | gap 1, opp_overlap 549531 549532 CAAATCATTTCACAA TC-CGTTGACA TGTT TGTCAATGAGA TTTTTGATGAGTTAT SpyM3_0498 549060 - 549935 + | F0F1 ATP synthase subunit gamma TERM 691 549958 - 549940 - f 76 -2.5 -5.58179 | gap 1, opp_overlap 549942, overlap 549943 CACTAGAATAAAAAA TAA-CGCT GACT AGCGATTA GGTTATTGTCAGCAT TERM 692 549954 - 549943 - f 81 -5.8 -4.84921 | opp_overlap 549942, overlap 549940 TAGAATAAAAAATAA CGCT GACT AGCG ATTAGGTTATTGTCA TERM 693 550909 - 550927 + G 72 -10.4 -2.52834 | overlap 550908 CCGTATGCCTTCTGC TGTTGGTT ACC AACCAACA CTTGCTACTGAAATG SpyM3_0499 550097 - 551503 + | F0F1 ATP synthase subunit beta atpC 551516 - 551932 + | F0F1 ATP synthase subunit epsilon SpyM3_0501 552198 - 552455 + | hypothetical protein TERM 694 552655 - 552641 - g 70 -2.8 -5.0925 | opp_overlap 552618 552641 CTTCAAAAGGAAAAA CAATTC TTA GAAATG TTCCTATTCTATCTG murA 552520 - 553791 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase SpyM3_0503 553795 - 553983 + | hypothetical protein TERM 695 553994 - 553980 - f 82 -10 -3.62864 | opp_overlap 553975 553980 TAAATTTACTGGAAA GTAGGC CTT GCCTAC TTTTTATAGCATTTG TERM 696 553980 - 553994 + F 100 -10 -4.89393 | opp_overlap 553980, overlap 553975 TAAATTTACTGGAAA GTAGGC CTT GCCTAC TTTTTATAGCATTTG endA 554019 - 554597 + | putative DNA-entry nuclease endA 554584 - 554883 + | putative DNA-entry nuclease TERM 697 555096 - 555136 + F 100 -13.3 -5.1675 | AAAACGGATGGTACC GCGTGTCAACGCTCCGCTT ATG AAGTGGAGTAGTGGCACGC TTTTTTCATCGCTAA TERM 698 555224 - 555206 - g 95 -6 -5.67529 | opp_overlap 555206 555208, overlap 555208 AATTAAAAACAAAAA CATTGGAG ACT CTCCAATC TTTGACGGGGAATCA TERM 699 555208 - 555222 + G 70 -8.6 -3.34517 | opp_overlap 555208 555206, overlap 555206 TTAAAAACAAAAACA TTGGAG ACT CTCCAA TCTTTGACGGGGAAT TERM 700 555222 - 555208 - g 85 -8.6 -4.43511 | opp_overlap 555206 555208, overlap 555206 TTAAAAACAAAAACA TTGGAG ACT CTCCAA TCTTTGACGGGGAAT pheS 555166 - 556209 + | phenylalanyl-tRNA synthetase subunit alpha TERM 701 556372 - 556399 + F 76 -9.8 -2.91144 | opp_overlap 556371 556365 556362 556374, overlap 556371 556375 GGAAATGACTCAAAT CACGGCTTGAGA GCCT TCTCTAGCCGAG TGATTTGGGCACTAA TERM 702 556397 - 556374 - f 83 -11 -2.96232 | opp_overlap 556372 556371 556375, overlap 556371 556365 556362 AAATGACTCAAATCA CGGCTTGAGA GCCT TCTCTAGCCG AGTGATTTGGGCACT TERM 703 558295 - 558307 + G 74 -6.3 -4.41616 | opp_overlap 558294 558295 TTTACCATGCTAAAG GTATC TTG GATAC TTTATTTGCAAACCT pheT 556464 - 558824 + | phenylalanyl-tRNA synthetase subunit beta TERM 704 558851 - 558833 - f 91 -4.4 -5.80364 | opp_overlap 558833 558835 558837, overlap 558835 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 705 558833 - 558851 + F 95 -6.6 -5.84432 | opp_overlap 558833 558835, overlap 558835 558837 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 706 558891 - 558880 - f 91 -4.4 -5.80248 | TAATAGAGAAAAAAA GAAC TCCA GTTC AAATGATTGGAGAAA TERM 707 558968 - 558950 - g 75 -2.5 -5.33405 | gap 1 TGTATCAAACAAAAA TAACAGGC AACC GCCT-TTA CCACACGGTTTCGAA TERM 708 559111 - 559129 + G 85 -8.9 -4.19624 | TACCATCGTCAATTT CAGCAAG ATACA CTTGCTG TTTCTGTTGAGGCTA SpyM3_0508 558934 - 559311 + | hypothetical protein SpyM3_0509 559304 - 559690 + | hypothetical protein SpyM3_0510 559763 - 560839 + | hypothetical protein TERM 709 561439 - 561424 - g 72 -3.2 -5.01858 | overlap 561426 TAAAGAAAAAAACAA GGCCAT TATT ATGGTC ACTCATGATGATCGG SpyM3_0511 560849 - 561517 + | ABC transporter ATP-binding protein TERM 710 561579 - 561555 - T 100 -10.1 -5.89921 | opp_overlap 561555 ATTAGAAGAAAAAAA CCAAACAAGCA CAG CACTTGTTTGG TTTTTTTCTAAGTGT TERM 711 561555 - 561579 + T 95 -8.7 -5.65177 | opp_overlap 561555 ATTAGAAGAAAAAAA CCAAACAAG CACAGCA CTTGTTTGG TTTTTTTCTAAGTGT SpyM3_0512 562374 - 561622 - | hypothetical protein TERM 712 562823 - 562796 - gH 77 -8.6 -3.55071 | opp_overlap 562795 CTATATTGCTCCAAA TTCTCTTTCATT TGAA AAGGAAAGAGAA GTCTTAACCTTATTG TERM 713 563241 - 563269 + GH 80 -6.1 -4.7657 | opp_overlap 563238 563241 563244 CTTTTAAATAACCAA CTATCAAAAACAG TTG TTGTTATTGATGG TTTTTCACGTTTTTC rexB 562689 - 565904 + | ATP-dependent nuclease subunit B TERM 714 567367 - 567377 + GF 81 -6.8 -4.77157 | AGAGGTGTTAAATGT CAGC AAT GCTG TTTTTAGTCACTTAA rexA 565865 - 569533 + | putative ATP-dependent exonuclease subunit A SpyM3_0515 569673 - 570485 + | putative ABC transporter rpsU 570626 - 570802 + | 30S ribosomal protein S21 TERM 715 570819 - 570839 + T 100 -6.9 -5.8096 | opp_overlap 570819 GGTAAAAAATAAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 716 570839 - 570819 - T 93 -6.9 -5.75538 | opp_overlap 570819 GGTAAAAAATAAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 717 570913 - 570892 - T 88 -5.9 -5.58454 | opp_overlap 570892 570895, overlap 570871 TTGATATCAAAAAAA GCAGTTAGA CATG CCTAACTAC TTTATCAAAAATCGC mscL 571292 - 570930 - | putative large conductance mechanosensitive channel TERM 718 570982 - 570995 + g 80 -4.5 -5.18355 | AATTCTTCTTGAGTA GGAGC TGCA GCTTC TTTTTCCTTTTTAGG dnaG 571467 - 573236 + | DNA primase rpoD 573245 - 574354 + | RNA polymerase sigma factor RpoD TERM 719 574347 - 574381 + F 89 -10.8 -3.53031 | opp_overlap 574348 574351 574357, overlap 574348 574350 574357 TAAGAGACTTTATAG AGGACTAAAATCGTCC AGT GGACGATTTTAGGTCG TTCCTTTGAAATAAG TERM 720 574380 - 574348 - f 84 -12.1 -2.91507 | opp_overlap 574347 574348 574350 574357, overlap 574351 574357 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 721 574348 - 574380 + F 93 -14.3 -2.71497 | opp_overlap 574348 574351 574357, overlap 574347 574350 574357 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 722 574350 - 574378 + F 87 -13.3 -2.89837 | opp_overlap 574348 574351 574357, overlap 574348 574347 574357 GAGACTTTATAGAGG ACTAAAATCGTCC AGT GGACGATTTTAGG TCGTTCCTTTGAAAT TERM 723 574377 - 574351 - f 100 -16.8 -2.69977 | opp_overlap 574350 574348 574347 574357, overlap 574348 574357 AGACTTTATAGAGGA CTAAAATCGTCC AGT GGACGATTTTAG GTCGTTCCTTTGAAA TERM 724 574371 - 574357 - f 100 -10 -4.34345 | opp_overlap 574350 574348 574347 574357, overlap 574351 574348 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 725 574357 - 574371 + F 93 -10 -4.24294 | opp_overlap 574357 574351 574348, overlap 574350 574348 574347 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 726 574514 - 574504 - f 79 -8.2 -3.95378 | opp_overlap 574503 TGATATCTTAAACAA GCCC AGA GGGC AATTCCTCTAAATAG TERM 727 574629 - 574654 + G 72 -8.5 -3.57883 | gap 1, opp_overlap 574637 CAAGATCAGGTGATA GCTATCAAGAAT AGA ATTCTTGA-AGC TTTAGAAACTGTTAT SpyM3_0520 574590 - 574928 + | hypothetical protein TERM 728 575558 - 575536 - g 73 -10 -2.91695 | overlap 575533 GGTATTTGGAAATTA TGGTAAAAAC TTT GTCTTTACCA TGGAACAGTTAGCGG TERM 729 575892 - 575882 - g 71 -6.8 -4.011 | opp_overlap 575881 575882, overlap 575883 CCAACATGGAAAGAA GCCT TGA AGGC ATTTTACCAACAAGG rmlD 575066 - 575920 + | putative dTDP-4-keto-L-rhamnose reductase TERM 730 575956 - 575933 - f 100 -9.6 -4.64598 | opp_overlap 575933 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 731 575933 - 575956 + F 100 -11.8 -4.78764 | opp_overlap 575933 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 732 577071 - 577047 - g 70 -3.5 -4.90266 | opp_overlap 577062 TGGACCAAGCAAAAA GGGCAATTAGC AGA GCTGATTAACC AAGTTGATGCAGGTT rgpAc 576039 - 577193 + | hypothetical protein rgpBc 577183 - 578115 + | alpha-L-Rha alpha-1,3-L-rhamnosyltransferase rgpCc 578118 - 578921 + | putative ABC-transporter (permease protein) TERM 733 579710 - 579696 - g 70 -2.8 -5.055 | TGAATGCTGAAAAAA TATCTG TAT CTGATA TTGCCAAAGATTTGA rgpDc 578921 - 580126 + | ABC transporter ATP-binding protein rgpEc 580151 - 581158 + | putative glycosyltransferase TERM 734 582516 - 582506 - g 74 -4 -5.05153 | ATGTTAAAAAACAAA TTGA TTT TCAA GCTATGGATACATTT rgpFc 581155 - 582900 + | hypothetical protein TERM 735 583041 - 583053 + G 74 -4.9 -4.77775 | GTAAACTATTATACT CATTT ACT AAATG TTTCTTTTGTGGGAT SpyM3_0528 582897 - 585371 + | hypothetical protein TERM 736 586024 - 586040 + G 76 -6.6 -4.33105 | opp_overlap 586023 CTAAGGTTAATTGAC CGTTCA TTGAT TGAACG TTTTGCTAATCATTA SpyM3_0529 585550 - 586245 + | putative glycosyl transferase SpyM3_0530 586247 - 586588 + | hypothetical protein SpyM3_0531 586581 - 587867 + | hypothetical protein SpyM3_0532 587848 - 589344 + | hypothetical protein TERM 737 589396 - 589358 - f 79 -10.6 -2.91467 | opp_overlap 589358 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT TERM 738 589358 - 589396 + F 100 -10.6 -4.5265 | opp_overlap 589358 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT pepT 589438 - 590661 + | peptidase T SpyM3_0534 590702 - 591190 + | putative pore-forming peptide TERM 739 591194 - 591173 - T 85 -6.6 -5.32882 | opp_overlap 591173 CAGCATGATAAAAAA GCCCTTAC TCGAGG GTAAGAGC TTTAGTTGGGCAAGA SpyM3_0535 591374 - 591177 - | putative ferredoxin SpyM3_0536 591424 - 591900 + | hypothetical protein TERM 740 592001 - 591969 - g 70 -9.3 -3.18433 | opp_overlap 591967 591970 591972, overlap 591967 591972 AGTGGAAAAAGTACA GTAGCCAAGATTATT GCA AAAAATCTTGGCTAT ACTTATCTAGATACT TERM 741 591970 - 592000 + G 83 -12.8 -2.89793 | opp_overlap 591969 591967 591972, overlap 591967 591972 GTGGAAAAAGTACAG TAGCCAAGATTATT GCA AAAAATCTTGGCTA TACTTATCTAGATAC TERM 742 591972 - 591998 + G 78 -11 -2.99717 | opp_overlap 591969 591967 591972, overlap 591970 591967 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT TERM 743 591998 - 591972 - g 77 -11 -2.78025 | opp_overlap 591972 591970 591967, overlap 591969 591967 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT cmk 591915 - 592595 + | cytidylate kinase TERM 744 592705 - 592728 + F 100 -13.2 -4.40526 | overlap 592668 592664 TGGAATATTATATGT GCGGGCTTGA TTTA TCAAGTCCGC TTTCGTTTTTCTCTA infC 592757 - 593287 + | translation initiation factor IF-3 rpmI 593329 - 593526 + | 50S ribosomal protein L35 rplT 593585 - 593944 + | 50S ribosomal protein L20 TERM 745 593991 - 593965 - T 100 -9.7 -5.1287 | opp_overlap 593968 GCTATACCTAAAAAA TAACTTTCTAT TACCT ATAGAAAGTTA TAAAGAAACAAAAAT TERM 746 594010 - 594028 + T 85 -6.7 -5.22006 | opp_overlap 594010 594013 594018, overlap 594018 594025 AGAAACAAAAATGAA GGAGACG ATGGA CGTCTTC TTTTTATTATACTCA TERM 747 594025 - 594059 + T 79 -8.9 -3.7229 | opp_overlap 594010 594018, overlap 594010 594018 GGAGACGATGGACGT CTTCTTTTTATTATA CTCAA TATAATAAAAAGCAG TTTCCCATGTTTTAT TERM 748 594214 - 594191 - T 100 -11.2 -5.45652 | opp_overlap 594194 ATCGCCAATAAAAAA GAAGCAAAAT TATT ATTTTGCTTC TAGTCAGATCATTAA SpyM3_0541 596445 - 594235 - | hypothetical protein TERM 749 594393 - 594408 + g 71 -6.2 -4.23486 | overlap 594406 CTGATCCGAGTTTTG CTGAAA TATC TTTCAG TTGTTTTAACTGCTT TERM 750 596667 - 596651 - g 100 -5.1 -5.75822 | overlap 596652 TATAAAGGAAAAAAA TCAGTTG GTT CAACTGG AGACCAAGTCCAATC TERM 751 596666 - 596652 - g 79 -8.6 -4.03053 | overlap 596651 ATAAAGGAAAAAAAT CAGTTG GTT CAACTG GAGACCAAGTCCAAT SpyM3_0542 596553 - 597716 + | hypothetical protein aroD 597713 - 598399 + | 3-dehydroquinate dehydratase TERM 752 599370 - 599359 - g 70 -5.8 -4.41348 | opp_overlap 599359 599358 TGGTCGTCAAACAAA CCAC TTAG GTGG CTTTGAAGGTGGCAT aroF 598493 - 599659 + | chorismate synthase SpyM3_0545 599720 - 600061 + | hypothetical protein TERM 753 600084 - 600111 + F 74 -3.5 -5.34055 | gap 1 AAGATAGGAAAAAAA CAGATTGCTGGC AGCTC GTCAG-GATCTG TTTTTTAGTGTTTAT TERM 754 600697 - 600711 + G 73 -5.7 -4.62302 | ATATTTTGATTGCCA CAGGA GGACA TCCTG TTTTTCCAGATATTG gor 600282 - 601634 + | glutathione reductase TERM 755 601661 - 601706 + T 83 -4.9 -5.4833 | gap 1, opp_overlap 601662, overlap 601662 TAAGGCAATAAAAAA TGATGTTAACAGTTTTCGAGGA AAG TCTTCTA-AACTGCTAGCATCG TTTTTTGTTAGGTGA folC.2 602991 - 601714 - | putative folyl-polyglutamate synthetase SpyM3_0548 603461 - 603021 - | hypothetical protein TERM 756 603415 - 603431 + g 70 -2.9 -5.06414 | overlap 603403 TGCTCGGTAGGGACA CCTCCTG ATT TACGAGG TTTTTGTTGACGGGA nifS 603696 - 604838 + | putative iron-sulfur cofactor synthesis protein thiI 604910 - 606064 + | thiamine biosynthesis protein ThiI TERM 757 606118 - 606131 + F 71 -3.1 -5.15634 | gap 1, opp_overlap 606118 606119, overlap 606120 TGATACTATTGAAAA GCCTCT ATA AG-GGC TTTTTTGCTGCAATG TERM 758 606322 - 606308 - g 87 -5 -5.40072 | overlap 606311 TGGGGTTCAAAAAAA TAAGCT AGC AGCTCA AAAATCTGCTCAGCC TERM 759 606879 - 606864 - g 71 -4 -4.94703 | overlap 606865 AAGATAAAAAAAGAA CTTCAG CTAG CTGAAA AAAAGGCTGACGTGA SpyM3_0551 606213 - 607394 + | hypothetical protein TERM 760 607509 - 607495 - f 79 -8.6 -3.74747 | GTAACGTTGACTAAA TGCACA TCC TGTGCA ACCGCGCGAAAATCG rplU 607608 - 607922 + | 50S ribosomal protein L21 SpyM3_0553 607934 - 608260 + | hypothetical protein rpmA 608288 - 608581 + | 50S ribosomal protein L27 TERM 761 608603 - 608630 + F 100 -8.4 -6.11229 | opp_overlap 608605, overlap 608604 608605 AACATCGCATTATAT AAGGCTTTCCAG GTGT CTGGAAAGCCGA TTTTTTTATTTTGGT TERM 762 608604 - 608629 + F 100 -11.9 -4.23077 | opp_overlap 608605, overlap 608603 608605 ACATCGCATTATATA AGGCTTTCCAG GTGT CTGGAAAGCCG ATTTTTTTATTTTGG TERM 763 608605 - 608628 + F 100 -15.4 -3.11406 | opp_overlap 608605, overlap 608604 608603 CATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 764 608628 - 608605 - f 100 -15.4 -3.54951 | opp_overlap 608604 608603 608605 CATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 765 609111 - 609125 + G 78 -4.2 -5.24129 | opp_overlap 609104 609102, overlap 609104 CAGGAACAGTCTTGA CAAGTC AAG GACTAG TTTTTTATGAGAAAG SpyM3_0555 608939 - 609853 + | putative capsular polysaccharide biosynthesis regulatory protein TERM 766 610020 - 610035 + G 70 -5.4 -4.35483 | overlap 610015 610013 CTTTTCCATATTGCA GGACCA GCAA TGGTTC TTTGTTGTCATAACG lsp 609850 - 610308 + | putative prolipoprotein signal peptidase SpyM3_0557 610298 - 611188 + | putative ribosomal large subunit pseudouridine synthase TERM 767 611527 - 611550 + F 90 -8.2 -5.34381 | overlap 611529 TGCTATATTTTGCTG AATCTCCTTG TTTC CAAGGAGATC TTTTTATTTGAATTT TERM 768 611529 - 611548 + F 100 -10.8 -4.2793 | overlap 611527 CTATATTTTGCTGAA TCTCCTTG TTTC CAAGGAGA TCTTTTTATTTGAAT TERM 769 611837 - 611801 - g 77 -11 -2.87881 | opp_overlap 611809 611811, overlap 611806 CAAGCCTTTTAGAGA TGACATGAGAGTTGAG GAAGA CACAACTCTGATGTCA GTAGATATTACAGGC pyrR 611583 - 612104 + | pyrimidine regulatory protein PyrR pyrP 612165 - 613379 + | putative uracil permease pyrB 613440 - 614375 + | aspartate carbamoyltransferase catalytic subunit TERM 770 615221 - 615209 - g 77 -7.7 -4.14472 | opp_overlap 615218 CCAAGACTTGTAAAA TGACC TTT GGTCA TCGTGGCTTTAACCA carA 614419 - 615501 + | carbamoyl phosphate synthase small subunit TERM 771 615784 - 615798 + G 73 -7.8 -3.9461 | AAAAAATCATGGTTA TCGGGT CTG GCCCGA TTATTATTGGACAAG carB 615747 - 618923 + | carbamoyl phosphate synthase large subunit TERM 772 618935 - 618960 + F 100 -10.7 -5.55698 | opp_overlap 618935 618950 618952 ATAAAAATTAAAAAA TCATTTTTAAG AAAA CTTAAAAATGA TTTTTTTAGATTATA TERM 773 618960 - 618935 - f 100 -10.7 -5.56112 | opp_overlap 618935, overlap 618950 618952 ATAAAAATTAAAAAA TCATTTTTAAG AAAA CTTAAAAATGA TTTTTTTAGATTATA TERM 774 619680 - 619659 - g 72 -9.5 -2.974 | overlap 619656 GCAAGATTTAAATGA TGCTTATGC AGAT GCACAAGCA GAAGTAAATAAAGCG SpyM3_0563 619129 - 620400 + | hypothetical protein SpyM3_0564 620424 - 621110 + | ABC transporter ATP-binding protein SpyM3_0565 621122 - 622342 + | ABC transporter permease TERM 775 622522 - 622553 + F 73 -8.8 -3.29511 | overlap 622523 AGTGATACATCTCTT ATTTCTAGCTGAAC TTCG GTTCGGCTAGGAAG TTGTCAGGCAATGAG TERM 776 622523 - 622552 + F 86 -12.3 -2.57564 | overlap 622522 GTGATACATCTCTTA TTTCTAGCTGAAC TTCG GTTCGGCTAGGAA GTTGTCAGGCAATGA SpyM3_0566 622596 - 624329 + | putative glycerophosphodiester phosphodiesterase TERM 777 624377 - 624331 - f 95 -12.6 -3.73224 | opp_overlap 624320 624332 624339 624343, overlap 624332 624343 GTAGTCTTTATTAAA GGTTTAAGGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAACT GAGTTATACTGTTTA TERM 778 624376 - 624332 - f 100 -16.1 -2.8372 | opp_overlap 624332 624339 624343, overlap 624331 624343 TAGTCTTTATTAAAG GTTTAAGGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 779 624332 - 624376 + F 100 -18.3 -2.63636 | opp_overlap 624332 624331 624343, overlap 624339 624343 TAGTCTTTATTAAAG GTTTAAGGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 780 624339 - 624369 + F 95 -12.8 -3.62418 | opp_overlap 624332 624331 624343, overlap 624332 624343 TATTAAAGGTTTAAG GAAAGTGTCAAG AAAAAAA CTTGACACTTTC TTTAAACTGAGTTAT TERM 781 624343 - 624365 + F 81 -7.8 -4.44046 | opp_overlap 624332 624331 624343, overlap 624339 624332 AAAGGTTTAAGGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG TERM 782 624365 - 624343 - f 76 -7.8 -3.922 | opp_overlap 624343 624339 624332, overlap 624332 624331 AAAGGTTTAAGGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG rpsP 624456 - 624728 + | 30S ribosomal protein S16 SpyM3_0568 624738 - 624977 + | RNA binding protein TERM 783 625003 - 625027 + F 100 -15.9 -4.65895 | opp_overlap 625003 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAGA TERM 784 625027 - 625003 - f 100 -15.9 -4.20531 | opp_overlap 625003 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAGA TERM 785 625294 - 625329 + F 100 -18 -4.40333 | opp_overlap 625305, overlap 625270 625283 AGTTTTTTGGGGGGG CATTCCTAAAATTAAG TATA CTTAATTTTAGGAATG TTTATATTCTTTACA TERM 786 625463 - 625453 - f 73 -4 -5.20216 | opp_overlap 625453 TATACTATCAAAAAA GTTA GAA TAAC TTTATAAAACAGTGG SpyM3_0569 625937 - 628936 + | putative surface antigen SpyM3_0570 628956 - 629357 + | hypothetical protein TERM 787 629459 - 629405 - T 100 -16.8 -5.12707 | opp_overlap 629408 629456 TTAAACGCTAAAAAA CAAGCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGCTTA TTAGGTGCTCTTAAT TERM 788 629408 - 629456 + T 100 -22.9 -3.70511 | opp_overlap 629405 AACGCTAAAAAACAA GCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGC TTATTAGGTGCTCTT czcD 630412 - 629537 - | putative cation-efflux system membrane protein SpyM3_0572 630548 - 631069 + | hypothetical protein rimM 631284 - 631802 + | 16S rRNA-processing protein TERM 789 631942 - 631921 - g 91 -9.5 -4.60487 | GATTATGCTGAAAAA GCTCGTCAT GTGG ATGACGAAC CCTATGGTGGGGGCC TERM 790 632080 - 632101 + G 93 -6.7 -5.40464 | opp_overlap 632080, overlap 632071 GCTTATGCTGAAGAA TTAGCTCTT GAGG AAGAGTTAA TTTTTATTTGTGGTC trmD 631792 - 632523 + | tRNA (guanine-N(1)-)-methyltransferase TERM 791 632794 - 632818 + G 72 -4.3 -4.74103 | opp_overlap 632793 632791 632797, overlap 632795 632797 TAAAAGAAGAAGTAT TAACCTTTGAC AAG GTTAAAGGTGG TTTTTCGATTAGGAC SpyM3_0575 632523 - 633515 + | putative thioredoxin reductase TERM 792 634296 - 634318 + G 76 -9.2 -3.76641 | CTTATCATTGTTAGT CCGATTTCAA CTG TTGCAATCGG TTTAGCTATTGGGCT SpyM3_0576 633693 - 634751 + | regulatory protein apbA 634764 - 635687 + | 2-dehydropantoate 2-reductase TERM 793 635707 - 635738 + F 100 -9.6 -5.58179 | TATCAAATCGTTATA CTCAATATTATGGC TAAA GCTTTAATATTGAG TTTTTTGTTATGCTG fruR 635943 - 636656 + | putative fructose operon transcriptional repressor fruK 636776 - 637564 + | putative fructose-1-phosphate kinase fruA 637561 - 639507 + | PTS system, fructose-specific IIABC component TERM 794 639536 - 639557 + F 90 -8.1 -5.23316 | opp_overlap 639536 TTTTTCTTACTAAAA CTAGAATCT GTCA AGGTTCTAG TTTTTTGCTATACTA SpyM3_0581 639606 - 640199 + | putative peptidoglycan hydrolase SpyM3_0582 640426 - 641058 + | putative peptidoglycan hydrolase TERM 795 641156 - 641124 - T 100 -19.5 -3.91911 | opp_overlap 641124, overlap 641149 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT TERM 796 641124 - 641156 + T 100 -19.5 -4.74084 | opp_overlap 641124 641149 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT TERM 797 641828 - 641846 + T 71 -3.2 -5.093 | overlap 641829 TAGTCAAATAAATTT CTTTTGAT TCC ATCAAAAA TTTTCTTATTTTAAA TERM 798 641971 - 641997 + T 84 -8.1 -4.48713 | opp_overlap 641974, overlap 641988 TAGTATTAGTCCTTA GAATACCATCA TCTGT TGAAGGTATTC TTTCTTATTGATACG SpyM3_0583 643034 - 642015 - | hypothetical protein TERM 799 642314 - 642342 + g 100 -6.1 -5.95539 | CTTCGGTTAACTCTT TCTTAATGAGATC ACT GATTTCTTTGAGA TTTTTTTCTTTAAAA TERM 800 642913 - 642884 - G 82 -10.9 -3.53012 | opp_overlap 642882, overlap 642870 642869 CTCCTTTGGTCCAAA CGGAAGTAACA TGATAAGG TGTTACTTCCG AATATCTAATCTCTT TERM 801 643336 - 643317 - H 100 -6.4 -6.28967 | opp_overlap 643316 GACAAATAAAAAAAA GACCTCAT CCAG AAGAGGTC GTGGTATAACTGGGG SpyM3_0584 643539 - 643715 + | hypothetical protein TERM 802 643753 - 643764 + F 78 -2.2 -5.59357 | GGTGCAGTACAAGAC CACT AACG GGTG TTTTTTTGATATAAT SpyM3_0585 643943 - 644323 + | hypothetical protein SpyM3_0586 644323 - 645171 + | hypothetical protein TERM 803 645340 - 645306 - g 72 -8.6 -3.61075 | opp_overlap 645313, overlap 645302 645307 645309 645312 645313 AACATATGAAATTAA TGACAATGCCTTCTGA GTT TCAGAAGGCTTTACCC ATATTAACTAAAATA TERM 804 645339 - 645307 - g 81 -12.1 -2.75561 | opp_overlap 645313, overlap 645306 645302 645309 645312 645313 ACATATGAAATTAAT GACAATGCCTTCTGA GTT TCAGAAGGCTTTACC CATATTAACTAAAAT TERM 805 645337 - 645309 - g 77 -11.1 -2.91429 | opp_overlap 645313, overlap 645307 645306 645302 645312 645313 ATATGAAATTAATGA CAATGCCTTCTGA GTT TCAGAAGGCTTTA CCCATATTAACTAAA TERM 806 645334 - 645312 - g 82 -10.6 -3.58914 | opp_overlap 645313, overlap 645309 645307 645306 645302 645313 TGAAATTAATGACAA TGCCTTCTGA GTT TCAGAAGGCT TTACCCATATTAACT TERM 807 645313 - 645333 + G 100 -14.1 -3.6106 | opp_overlap 645312 645309 645307 645306 645302 645313 GAAATTAATGACAAT GCCTTCTGA GTT TCAGAAGGC TTTACCCATATTAAC TERM 808 645333 - 645313 - g 93 -14.1 -2.74625 | opp_overlap 645313, overlap 645312 645309 645307 645306 645302 GAAATTAATGACAAT GCCTTCTGA GTT TCAGAAGGC TTTACCCATATTAAC papS 645296 - 646504 + | tRNA CCA-pyrophosphorylase SpyM3_0588 646501 - 648378 + | putative ABC transporter ATP-binding protein TERM 809 648442 - 648431 - f 74 -5.8 -4.46621 | overlap 648433 GATAATAGAAAAGAA GTGC TCTT GCAC TGAGCCCCAAAAGTT TERM 810 648479 - 648511 + F 75 -4.9 -4.83677 | overlap 648471 648474 648473 TCTATTTGAAGTAAA GGATTTAGTTCTGTG TTG TAGAGGGCTAAGTCC TTTTCGTTTTATTTT TERM 811 648653 - 648686 + F 93 -11.1 -3.90744 | opp_overlap 648652 GTTTTTTTCAGAGAT GCTTCTTTGCAGAGA TGCT TCTTTGCAGAGATGC TTCTTTCAAACGGAG TERM 812 648697 - 648710 + F 74 -2.3 -5.42259 | opp_overlap 648697 GATGCTTCTTTCAAA CGGAG TTCC CTCGG TTTTTTTAGCGCTAA TERM 813 648762 - 648807 + F 100 -16.4 -3.80625 | opp_overlap 648765, overlap 648765 648767 CTTAATGTCATACAA AAACACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTGTAG TTTACATTATGGCGC TERM 814 648804 - 648765 - f 100 -22.5 -4.98522 | opp_overlap 648765 648762 648767 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 815 648765 - 648804 + F 100 -22.5 -2.98778 | opp_overlap 648765, overlap 648762 648767 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 816 648767 - 648802 + F 100 -19.3 -3.04183 | opp_overlap 648765, overlap 648765 648762 TGTCATACAAAAACA CCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGG TGTAGTTTACATTAT SpyM3_0589 648882 - 649034 + | hypothetical protein fms 649290 - 649700 + | peptide deformylase TERM 817 649708 - 649728 + T 79 -4 -5.40072 | opp_overlap 649708 TAATTTAACAAAAAA CCTAGAGT AGGAC GCTTTAGG TTTTTTTGGCAAAGA TERM 818 649718 - 649708 - T 84 -5.4 -5.5074 | opp_overlap 649708 TAATTTAACAAAAAA CCTA GAG TAGG ACGCTTTAGGTTTTT SpyM3_0591 651794 - 649782 - | 5'-nucleotidase TERM 819 650258 - 650244 - G 71 -5 -4.59944 | opp_overlap 650248, overlap 650245 650246 ACCACCATAAAGAAA GTCGTT GAC AACAAC GGTGTAAGTAGTTGT TERM 820 651078 - 651058 - G 70 -8.3 -3.41757 | opp_overlap 651057 651056, overlap 651056 GCTAAAACCACAATA GCATGAACA TGT TGTTCTTGC AGTTCTTTAGCATAT TERM 821 651932 - 651913 - H 77 -5.8 -4.69027 | AAAGCGATTTAAAAA CAAACGAT ACAG ATCATTTG AAGTTATATAGTTAG SpyM3_0592 652014 - 652664 + | GTP pyrophosphokinase TERM 822 652724 - 652694 - g 85 -11.2 -3.37245 | opp_overlap 652722 TTAGCTGAAGACGAA TGGCAGATGTCTAA TGT TTTGACAACTGCCA TGACTCATCAAGGTT SpyM3_0593 652667 - 653335 + | putative two-component response regulator TERM 823 653507 - 653497 - g 70 -5.4 -4.41616 | ATTTCCTCAAATAAA GGTA AAT TACC TGACACTACGGAAAG SpyM3_0594 653344 - 654576 + | putative putative two-component sensory transduction histidine kinase TERM 824 654643 - 654659 + F 100 -9.4 -4.71482 | opp_overlap 654646 ATAAACGATGCTTAA CCAGCC CATGA GGCTGG TTTTTAACGTTTAAT mvaK1 654870 - 655748 + | mevalonate kinase mvaD 655811 - 656674 + | mevalonate diphosphate decarboxylase mvaK2 656667 - 657674 + | phosphomevalonate kinase SpyM3_0598 657667 - 658656 + | isopentenyl pyrophosphate isomerase TERM 825 658866 - 658823 - T 100 -11.3 -4.63044 | gap 1, opp_overlap 658830, overlap 658830 ATGTATAGAAACAAA GATTAAACACCCATGTAAAC CAATT GTTTACATGGGTGTTTG-CC TTATATTAGTTGTTT TERM 826 658830 - 658860 + T 100 -17.1 -3.85509 | opp_overlap 658823 658830 GAAACAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG TERM 827 658860 - 658830 - T 100 -17.1 -4.10269 | opp_overlap 658830, overlap 658823 GAAACAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG mvaS.1 660163 - 658886 - | putative 3-hydroxy-3-methylglutaryl-coenzyme A TERM 828 659408 - 659433 + g 90 -8.3 -5.05782 | overlap 659410 CCGGTAAGGATCTAC TTGAGCTAGTC GGCT GGCTAGCTCTA TTTTTTGAGCTAACT TERM 829 659410 - 659431 + g 90 -10.9 -4.15748 | overlap 659408 GGTAAGGATCTACTT GAGCTAGTC GGCT GGCTAGCTC TATTTTTTGAGCTAA TERM 830 659736 - 659750 + g 85 -2.8 -5.86976 | overlap 659734 GGATAAGCTTTATTT GCCAAT GCA ATTAGC TTTTTTGTTTTATGA TERM 831 660108 - 660120 + g 71 -4.1 -4.86731 | TCGATAAGTTGGAGG CGTTC TTC GAATG TTTTCTTTGAAAAAC mvaS.2 661325 - 660150 - | putative 3-hydroxy-3-methylglutaryl-coenzyme A synthase TERM 832 660520 - 660548 + g 88 -8.3 -4.74453 | opp_overlap 660521 660524, overlap 660521 660524 ATTTGTTTGCTATAA GTAATAGAAGCTT GAA AGGCTTCTATTAG TTTTTCCCTGTGTTC TERM 833 660547 - 660521 - G 70 -9.6 -2.57132 | opp_overlap 660520 660521 660524, overlap 660524 TTTGTTTGCTATAAG TAATAGAAGCTT GAA AGGCTTCTATTA GTTTTTCCCTGTGTT TERM 834 660521 - 660547 + g 86 -11.8 -3.43587 | opp_overlap 660521 660524, overlap 660520 660524 TTTGTTTGCTATAAG TAATAGAAGCTT GAA AGGCTTCTATTA GTTTTTCCCTGTGTT TERM 835 660524 - 660544 + g 79 -9.1 -3.83644 | opp_overlap 660524 660521, overlap 660521 660520 GTTTGCTATAAGTAA TAGAAGCTT GAA AGGCTTCTA TTAGTTTTTCCCTGT thyA 661534 - 662373 + | thymidylate synthase dyr 662453 - 662950 + | putative dihydrofolate reductase SpyM3_0603 662970 - 663140 + | hypothetical protein TERM 836 663624 - 663602 - g 70 -5.7 -4.42386 | gap 1, opp_overlap 663587 TGTGGATTTACAAAA GTCCAA-CAT TTTG ATGATTGGAC CAACAGGTTCAGGAA TERM 837 663956 - 663928 - g 70 -9 -3.1706 | gap 2 AAGGTACGGTAGCAA GTG-TTCC-CCCAC AAG GTGGGCGGAAGCAC CCTAATCAAGAAATG clpX 663270 - 664499 + | ATP-dependent protease ATP-binding subunit SpyM3_0605 664509 - 665108 + | GTPase EngB TERM 838 665138 - 665155 + F 76 -4.1 -5.18726 | TTATCTATGCTAAAA CATTCTC AGTA GAGGGTG TTTTTCTTATCGAAA SpyM3_0606 665256 - 666002 + | hypothetical protein TERM 839 665982 - 666014 + T 74 -3.3 -5.36314 | opp_overlap 665982 AAAGCGCTAAAAAAG TCCGTCAAGTGTATA ACG TAGTCACAAGACGGA TTTTTTCATGTTTTG clpL 668154 - 666055 - | putative ATP-dependent Clp proteinase (ATP-binding subunit) TERM 840 666091 - 666108 + g 75 -2.7 -5.1925 | overlap 666085 666092 CACTAGTTGTCCTTC TTTTAGG ATTG CCTGAAG TTTTTTGACTTCTGG TERM 841 668867 - 668850 - g 74 -4.2 -5.17576 | TACTAATGGAAAAAA TTGTTG CAACAC CAACAA AAGAATACATCTGGG rpiA 668534 - 669217 + | ribose-5-phosphate isomerase A TERM 842 669333 - 669368 + G 71 -7 -4.03141 | gap 1 TTGGTTGTTTTAGAC TCTGTCGGTAT-TGGTG CAG CACCAGATGCTGACAAA TTCTTTAATGCTGGT TERM 843 669510 - 669499 - g 72 -4.4 -4.8083 | CAATACCACTAAAAA CTGT TCCA ACAG AAGACAATCCTACTG deoB 669294 - 670505 + | phosphopentomutase arsC 670524 - 670964 + | putative arsenate reductase punA 670948 - 671757 + | purine nucleoside phosphorylase deoD2 672528 - 673133 + | putative purine nucleoside phosphorylase TERM 844 673168 - 673142 - f 85 -8.9 -4.09805 | gap 1, opp_overlap 673141 673145 673147 673149, overlap 673145 673147 TGACTAATAATCAAA CACTAGACATCC TTTT GGATGTCTA-TG CTTATAATCACGCCT TERM 845 673166 - 673145 - f 83 -11.7 -2.77051 | opp_overlap 673141 673145 673147 673149, overlap 673142 673147 CTAATAATCAAACAC TAGACATCC TTTT GGATGTCTA TGCTTATAATCACGC TERM 846 673145 - 673166 + F 83 -11.7 -2.86271 | opp_overlap 673145 673142 673147, overlap 673141 673147 673149 CTAATAATCAAACAC TAGACATCC TTTT GGATGTCTA TGCTTATAATCACGC TERM 847 673164 - 673147 - f 76 -9.9 -2.91872 | opp_overlap 673145 673141 673147 673149, overlap 673145 673142 AATAATCAAACACTA GACATCC TTTT GGATGTC TATGCTTATAATCAC TERM 848 673147 - 673164 + F 77 -9.9 -2.98072 | opp_overlap 673147 673145 673142, overlap 673145 673141 673149 AATAATCAAACACTA GACATCC TTTT GGATGTC TATGCTTATAATCAC SpyM3_0613 673261 - 673914 + | putative histidine protein kinase cpsY 674779 - 673994 - | putative transcriptional regulator SpyM3_0615 675121 - 675657 + | hypothetical protein TERM 849 675863 - 675886 + F 100 -12.4 -4.81685 | overlap 675860 TTTTAGTTTGCTGTA GCCTCGCTTC TTTG GTAGCGAGGC TTTTTGGTGCTTAAT TERM 850 675957 - 675993 + G 93 -9.6 -4.7153 | opp_overlap 675986, overlap 675984 AGAACGCCCAATTAT TGCTTTAGACTTTTCA TCATT TGAGGAGACTAAAGCA TTTTTAGACTTATTT pyrF 675934 - 676626 + | orotidine 5'-phosphate decarboxylase pyrE 676684 - 677313 + | orotate phosphoribosyltransferase amiC 677510 - 678964 + | amidase TERM 851 679212 - 679190 - g 75 -2.7 -5.34309 | gap 1 ACTATCAAAGAAAAA GGGGT-GTTA AAAG TAGCTACCCC AGGAACCTATCAGCC TERM 852 679542 - 679529 - g 84 -2.3 -5.72207 | TGGAAAGGAAAAAAA GCAGC TGGC GCTTC TGGAACAGAGTACAT TERM 853 679932 - 679914 - g 86 -2.4 -5.88197 | GCAAAGACAAAAAAA TTCCCATC ATT GATACGAA AGACGTTAACTAATA SpyM3_0619 679082 - 679945 + | putative ABC transporter (binding protein) SpyM3_0620 679974 - 680624 + | putative ABC transporter (permease) TERM 854 680647 - 680675 + F 100 -9.7 -4.33928 | opp_overlap 680645 680649, overlap 680649 TAAAAAACGAATATT AACCCTGGAAATA TCA TATTTTCAGGGTC TTTCTATTTAAAATG TERM 855 680673 - 680649 - f 81 -10.1 -3.46844 | opp_overlap 680647 680649, overlap 680645 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA TERM 856 680649 - 680673 + F 95 -12.3 -3.76586 | opp_overlap 680649 680645, overlap 680647 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA ung 680757 - 681410 + | uracil-DNA glycosylase TERM 857 682120 - 682131 + G 72 -4.4 -4.82678 | TTTTAATGAAGGTAT TGCT GAGG AGCA TTTTCATTTTTGTGG pyrC 681542 - 682810 + | dihydroorotase TERM 858 682832 - 682856 + T 100 -13.7 -4.33767 | opp_overlap 682832 AGTTAAAACAAAAAA GCTTGACTTTC AGA GAAAGTCAGGC TTTTAGTAAATTTAT TERM 859 682856 - 682832 - T 100 -11.5 -5.80951 | opp_overlap 682832 AGTTAAAACAAAAAA GCTTGACTTTC AGA GAAAGTCAGGC TTTTAGTAAATTTAT SpyM3_0623 683590 - 682868 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 860 683678 - 683660 - g 74 -4 -5.0917 | TGACTAAAAAAGAAA TTACAATT AAT AATTATAA TGACGATGCTATCCA TERM 861 684279 - 684261 - g 81 -7.5 -4.56597 | TTTTCTTTTGAAAAA TGTCAAG ATGAG CTTGACA GATCTTCGTGGAGAT TERM 862 684887 - 684871 - g 86 -2.3 -6.01725 | AAGAAAAACAAAAAA GACAA AGGCTTG TTGTC GGGAAAATTAACCCC parE 683641 - 685593 + | DNA topoisomerase IV subunit B TERM 863 686608 - 686598 - g 73 -6.8 -4.15748 | TGAGTTGAAAAAAGA GGCT GAT AGCC AAACCATTTTGAATT parC 685684 - 688143 + | DNA topoisomerase IV subunit A TERM 864 688140 - 688165 + F 100 -10.7 -4.49344 | opp_overlap 688139 688147, overlap 688147 GGTAGCTAGAACACG TTAAAAAGAGT GAAA ACTCTTTTTAA TTTTATGGTAAATTT TERM 865 688158 - 688147 - f 70 -4.4 -4.67556 | opp_overlap 688147 688140, overlap 688139 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGG TERM 866 688147 - 688158 + F 76 -4.4 -5.1417 | opp_overlap 688139 688147, overlap 688140 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGG TERM 867 688413 - 688402 - g 71 -7.2 -3.91858 | opp_overlap 688402 TACATATCTCAGAAA GCGC TCCA GCGC TTCATTATGGGCAAC bcaT 688263 - 689288 + | branched-chain amino acid aminotransferase TERM 868 689310 - 689295 - f 75 -9 -3.46858 | opp_overlap 689295, overlap 689293 689291 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG TERM 869 689295 - 689310 + F 95 -9 -5.50313 | opp_overlap 689293 689291 689295 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG SpyM3_0627 689352 - 689582 + | hypothetical protein TERM 870 689610 - 689635 + F 71 -7.8 -3.61517 | ACACTTGCCAGCTTA CAAAAACTAT GATAGA ATAGTTTTTG TTGTTACGGAAAGAT TERM 871 689768 - 689737 - f 85 -10.4 -3.51708 | opp_overlap 689723 689734 689760, overlap 689733 689755 689760 689767 CATTTCGGAAACTAA TCTAATTAGATTCG GAAA CTAATCTAATTAGA AAATTAGTTTTCTGT TERM 872 689956 - 689971 + F 89 -9 -4.64334 | opp_overlap 689956 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT TERM 873 689971 - 689956 - f 85 -9 -4.26344 | opp_overlap 689956 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT rpsA 689994 - 691199 + | 30S ribosomal protein S1 TERM 874 691236 - 691205 - T 85 -11.8 -3.12069 | opp_overlap 691206 691212, overlap 691212 TGAATTGTAATAAAT CTAAAAAGTTGAGG TTTT CCTCAACTTTTTAT TGTCTTCTGGTTAGA TERM 875 691206 - 691235 + T 100 -15.3 -3.79995 | opp_overlap 691205 691212, overlap 691212 GAATTGTAATAAATC TAAAAAGTTGAGG TTTT CCTCAACTTTTTA TTGTCTTCTGGTTAG TERM 876 691212 - 691229 + T 100 -9.9 -5.31072 | opp_overlap 691205 691212, overlap 691206 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 877 691229 - 691212 - T 100 -9.9 -4.86939 | opp_overlap 691212 691206, overlap 691205 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 878 691417 - 691402 - T 76 -2.6 -5.43487 | gap 1, opp_overlap 691403 691404, overlap 691395 691403 691404 AAATCATATAAAAAA GCCCTAT TTG ATAGG-C TTTTTTTGTTTCTTG TERM 879 691403 - 691417 + T 91 -2.8 -6.08342 | opp_overlap 691402 691403 691395 691404, overlap 691404 AATCATATAAAAAAG CCCTAT TTG ATAGGC TTTTTTTGTTTCTTG TERM 880 691404 - 691416 + T 71 -6.3 -4.21345 | opp_overlap 691404 691402 691403 691395, overlap 691403 ATCATATAAAAAAGC CCTAT TTG ATAGG CTTTTTTTGTTTCTT TERM 881 691609 - 691619 + T 71 -5.4 -4.58663 | opp_overlap 691609 TAATTATTGATGAGA TGGT GAA ACCA TTTTTAGCAAGTGCT SpyM3_0629 692048 - 691746 - | hypothetical protein TERM 882 692190 - 692172 - H 82 -3.1 -5.75342 | TTTTGTGAAAAAAAA GACAAAC AAATG GCTTGCC TAGACTTGTTTTTCC SpyM3_0630 692249 - 693235 + | hypothetical protein TERM 883 693246 - 693265 + F 89 -7.2 -5.31275 | opp_overlap 693246 CCTAATATCTCAAAA CAAATCAG GAAA CTGGTTTG TTTTTTGTGATACAG TERM 884 693311 - 693295 - f 75 -8.1 -3.86916 | GATGATGAGACCAAA TTGCAAA GAC TTTGCAA CAAGATACTAGTGAA SpyM3_0631 693546 - 693932 + | hypothetical protein TERM 885 694424 - 694437 + G 76 -4.5 -5.06414 | opp_overlap 694418 CGGCATTAACAGCAC CTGCT AGTA GGCAG TTTTTATTAGGACAG SpyM3_0632 693991 - 694899 + | putative exfoliative toxin TERM 886 694993 - 694966 - T 71 -3.3 -5.20216 | opp_overlap 694966 GAGATTACTAAAAAA GAGGCCGGCAC TTTAAT GTGCTAGTCTC TTTTAAATTGATCCA TERM 887 695024 - 695043 + T 71 -3.4 -5.15117 | overlap 695038 TTGTCACGTTAGCGA GCTACACG ACGA CGCGCAGC TTTTTTGCGGTTTTC SpyM3_0633 695193 - 695017 - | hypothetical protein TERM 888 695050 - 695073 + g 76 -3.1 -5.29445 | overlap 695038 ACGCGCAGCTTTTTT GCGGTTTTC TTCAAT GAAAGCAGC TTTTTCTTCTTCAGG miaA 695327 - 696226 + | tRNA delta(2)-isopentenylpyrophosphate transferase hflX 696380 - 697537 + | putative GTP-binding protein SpyM3_0636 697530 - 698165 + | hypothetical protein SpyM3_0637 698180 - 699109 + | ribonuclease Z SpyM3_0638 699109 - 699873 + | oxidoreductase TERM 889 699908 - 699926 + G 74 -8.9 -3.59979 | opp_overlap 699903 699908, overlap 699911 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 890 699926 - 699908 - g 85 -8.9 -4.17186 | opp_overlap 699908 699911, overlap 699903 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 891 699962 - 699948 - g 80 -6.4 -4.82128 | CTAGCAAAGACAAAA GGTCTA ACC CAGACC GCCGCTCAGTTGATT recJ 699870 - 702080 + | putative single-strand DNA-specific exonuclease apt 702230 - 702748 + | adenine phosphoribosyltransferase SpyM3_0641 702829 - 703512 + | hypothetical protein TERM 892 703896 - 703876 - g 73 -5.4 -4.56597 | opp_overlap 703864, overlap 703878 GTGTTGGCCGAAAAA CAGCCAAT GTGGT ATTGGCAG AGGTTTATGGTGTTC nth 703509 - 704165 + | putative endonuclease III (DNA repair) TERM 893 704149 - 704177 + F 93 -7.5 -5.61596 | opp_overlap 704155 ATCAAAATACTTATG GAAAATCGAAAGC CTA GCCTTTGGTTTTC TTTTTTTATGGAGGT SpyM3_0643 704237 - 704923 + | hypothetical protein TERM 894 705621 - 705611 - g 73 -6.8 -4.15066 | overlap 705618 705619 TACGGAGAAATTAAA GGAG AAA CTCC AAGGGTGGAAAGAAG SpyM3_0644 704913 - 705701 + | hypothetical protein TERM 895 706575 - 706563 - g 70 -3.4 -4.83615 | opp_overlap 706563 CAGGTTTTAGAAAAA CTTG AAATG CAAG CTCTTACTTATTTGC SpyM3_0645 705741 - 706847 + | putative oxidoreductase rmlA 706905 - 707774 + | glucose-1-phosphate thymidyl transferase rmlC 707774 - 708367 + | dTDP-4-dehydrorhamnose 3,5-epimerase rmlB 708611 - 709651 + | dTDP-glucose 4,6-dehydratase TERM 896 709705 - 709654 - f 100 -13.6 -4.9448 | gap 2, opp_overlap 709661, overlap 709661 AGTGATTAAATAAAA CATTAAAGAACCTTGTCATATCAA TTATCG TTGATATGACAAGGTTCTTT--TG ATAGTTTAAATTGAT TERM 897 709700 - 709661 - f 100 -19.7 -4.14724 | opp_overlap 709661, overlap 709654 AAATAAAACATTAAA GAACCTTGTCATATCAA TTATCG TTGATATGACAAGGTTC TTTTGATAGTTTAAA TERM 898 709661 - 709700 + F 100 -20.4 -4.39386 | opp_overlap 709654 709661 AAATAAAACATTAAA GAACCTTGTCATATCAAT TATC GTTGATATGACAAGGTTC TTTTGATAGTTTAAA mutX 709872 - 710348 + | putative dGTP pyrophosphohydrolase SpyM3_0650 710406 - 711587 + | hypothetical protein SpyM3_0651 711577 - 712824 + | hypothetical protein TERM 899 712830 - 712867 + T 100 -13.6 -5.32565 | opp_overlap 712830 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGA AATAAC TTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA TERM 900 712867 - 712830 - T 100 -7.7 -5.89921 | opp_overlap 712830 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGAA ATAA CTTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA SpyM3_0652 714535 - 712883 - | putative fibronectin-binding protein-like protein A TERM 901 713212 - 713223 + g 72 -4.4 -4.70659 | AGTTATTGCGTCCCA CCAT GAGA ATGG TTTTTCCATCTGAAG TERM 902 714795 - 714819 + H 93 -7.9 -5.45802 | opp_overlap 714793 714795 TTGGATTTCACAAGA GCGCCTAGTAA TCA TTACTAAGTGC TTTTTCTTTTGAGAA SpyM3_0653 714889 - 715887 + | putative ABC transporter substrate-binding protein SpyM3_0654 715838 - 716056 + | hypothetical protein SpyM3_0655 716232 - 717101 + | putative ABC transporter membrane-spanning permease SpyM3_0656 717098 - 717856 + | ABC transporter ATP-binding protein TERM 903 717870 - 717894 + F 70 -2.2 -5.38497 | opp_overlap 717857 AATCAACGATCTAAA TCATTGAC GAATAATAA GTCAGTGA TTTTTTGATTTCCAT SpyM3_0657 718060 - 719721 + | Zn-dependent hydrolase TERM 904 719731 - 719758 + F 89 -9.3 -4.19735 | gap 1, opp_overlap 719730 719728 719731, overlap 719735 CGTTAGTGAAAATAG GAAGGTTAGGCA AAAAC TGCCTA-CCTTC TTTGATTTTAACAAC TERM 905 719758 - 719731 - f 76 -10 -2.81208 | gap 1, opp_overlap 719731 719735, overlap 719730 719728 CGTTAGTGAAAATAG GAAGGTTAGGCAA AAA CTGCCTA-CCTTC TTTGATTTTAACAAC estA 719854 - 720639 + | putative tributyrin esterase SpyM3_0659 720669 - 720995 + | hypothetical protein TERM 906 721004 - 721019 + F 91 -5.4 -5.80364 | opp_overlap 721004 AAACTAGGCTGAAAA TGTCCT CAAA AGGGCA TTTTTTTGTTAGAAT TERM 907 721464 - 721490 + G 79 -9.6 -3.72893 | opp_overlap 721470, overlap 721465 721470 ACATATGAAGCTGAG ATTAAAGCCATT TTA AATGGCTTTAAA TTTGATGAAAGCATG TERM 908 721465 - 721489 + G 90 -13.1 -2.83522 | opp_overlap 721470, overlap 721464 721470 CATATGAAGCTGAGA TTAAAGCCATT TTA AATGGCTTTAA ATTTGATGAAAGCAT TERM 909 721484 - 721470 - g 77 -8.6 -3.84712 | opp_overlap 721465 721464 721470 GAAGCTGAGATTAAA GCCATT TTA AATGGC TTTAAATTTGATGAA TERM 910 721470 - 721484 + G 77 -8.6 -3.87149 | opp_overlap 721470, overlap 721465 721464 GAAGCTGAGATTAAA GCCATT TTA AATGGC TTTAAATTTGATGAA TERM 911 721836 - 721820 - g 74 -5.1 -4.66318 | AGTAGCCGAAGAAAA GCAGTTT GAC AAACAGC AAAAAGAAATTGCCA TERM 912 722661 - 722636 - g 85 -7.6 -4.84359 | gap 1, overlap 722652 TTACCTTGAGAAAAA GGCAGAGCTAG AAGAA CTAGCCC-GCC TAGCAGCAGGAGAGA SpyM3_0660 721041 - 722948 + | ABC transporter ATP-binding protein TERM 913 722952 - 722978 + F 88 -7.5 -4.94992 | gap 1, opp_overlap 722952 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGC TERM 914 722978 - 722952 - f 88 -7.5 -5.02439 | gap 1, opp_overlap 722952 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGC TERM 915 723290 - 723306 + G 73 -9.5 -3.1478 | opp_overlap 723288, overlap 723288 AAAATGGAACGTATT CGTGAAT TTG ATTCACG TATTAATAAACTCGT TERM 916 724039 - 724028 - g 80 -4.4 -5.28942 | GAGTGGAAAGAAAAA GATC CAAT GATC AAATATCGTACTTAT acoA 723233 - 724201 + | putative acetoin dehydrogenase (TPP-dependent) alpha chain acoB 724257 - 725258 + | putative acetoin dehydrogenase (TPP-dependent) beta chain TERM 917 725554 - 725515 - g 81 -5.8 -5.05782 | gap 1, opp_overlap 725528 ATCGAGTGGAAAAAA CAAGAAGGTGAT-ACCGTC AAT GAAGGTGATATCCTTCTTG AAATCATGTCAGACA TERM 918 726499 - 726521 + G 77 -6.3 -4.58213 | overlap 726500 CCTGTTATCCATGGG GCTGACAAG ATGAG CTTGTCAGA TTTTGTGCTTGCTTC TERM 919 726500 - 726520 + G 75 -9.8 -3.33843 | overlap 726499 CTGTTATCCATGGGG CTGACAAG ATGAG CTTGTCAG ATTTTGTGCTTGCTT acoC 725443 - 726852 + | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 920 727012 - 726994 - f 83 -10.3 -3.25356 | overlap 726989 TGATAAGCAATTGAA TCCGAGC GAAAA GCTCGGA TAAAAATGGTAAGAG TERM 921 728232 - 728216 - g 79 -5.1 -5.09426 | overlap 728217 TTGAACTTCAAAAAA TCCTTTC TAA GAAAGGC ATGAAGATCAAAACA TERM 922 728231 - 728217 - g 73 -8.6 -3.64933 | overlap 728216 TGAACTTCAAAAAAT CCTTTC TAA GAAAGG CATGAAGATCAAAAC acoL 727183 - 728946 + | putative dihydrolipoamide dehydrogenase component E3 TERM 923 729066 - 729023 - T 77 -10.4 -2.58231 | opp_overlap 729025, overlap 729022 729034 729048 AGCACAACTATGAAC TGCACCCCAAACGTTAGA TATAAAAC CCTAACGTTTGGGGTGTT TTTGTATGACATTAA TERM 924 729025 - 729064 + T 100 -16.7 -4.98522 | opp_overlap 729023 729022 729034 729048 CACAACTATGAACTG CACCCCAAACGTTAG ATATAAAACC CTAACGTTTGGGGTG TTTTTGTATGACATT TERM 925 729185 - 729170 - T 77 -3.3 -5.55695 | GAAGAAGACAAAAAA CCATT ATAAAG AATGG ACAAAGACGAGTCTG TERM 926 729334 - 729290 - T 88 -7.3 -5.13722 | opp_overlap 729296, overlap 729291 729296 729318 CGTATCAAAATAAAA CGAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTACT TCAAATAGAGTAGCC TERM 927 729333 - 729291 - T 89 -10.8 -3.67149 | opp_overlap 729296, overlap 729290 729296 729318 GTATCAAAATAAAAC GAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTAC TTCAAATAGAGTAGC TERM 928 729328 - 729296 - T 100 -9.3 -4.83677 | opp_overlap 729296, overlap 729291 729290 729318 AAAATAAAACGAAAA GGACTTAGTCCTCTA CAA TACAGAACTAAATCC TTTACTTCAAATAGA hylA 731852 - 729429 - | extracellular hyaluronate lyase SpyM3_0666 732085 - 733074 + | putative lipoate-protein ligase TERM 929 733154 - 733122 - T 74 -5.7 -4.76171 | gap 1, opp_overlap 733142, overlap 733117 GAAAAAACTATAAAA CTCCTAAGC-GAAC TATCGT GTCCTACTTAGGAG TTTTTGTTTGATGAC cobQ 733974 - 733183 - | putative cobyric acid synthase TERM 930 733446 - 733431 - G 71 -7.6 -3.86015 | opp_overlap 733430 733431 TACCGTTGCCATAAA CCACTT GTCC AAGTGG CTTTTCGTCACCAGA murC 735311 - 733974 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 931 736015 - 736039 + G 72 -8.7 -3.54935 | GCAGCCTGTGCTTAC TTGCCTTTG TCAGAAT CAAAGGCAA TTTCCAAAGAATTTG SpyM3_0669 735424 - 736275 + | hypothetical protein SpyM3_0670 736272 - 737228 + | hypothetical protein TERM 932 737518 - 737530 + G 70 -7.7 -3.63298 | overlap 737516 ACTTGGCGTTTTAGC GACAC CTG GTGTC TCTTATTTAGTTAGA TERM 933 737601 - 737555 - g 76 -4.5 -5.1523 | gap 1, overlap 737556 GTTAGAACAGAAAAA GCAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTGA CAATGGCATCAAATT TERM 934 737600 - 737556 - g 70 -8 -3.68053 | gap 1, overlap 737555 TTAGAACAGAAAAAG CAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTG ACAATGGCATCAAAT SpyM3_0671 737447 - 738637 + | putative phospho-sugar mutase TERM 935 738677 - 738656 - f 81 -8.1 -4.11183 | opp_overlap 738660, overlap 738660 GTTGAGTACAAACAA GAAACCTTA TTTC TAAGGCTTC TGTCAACAATTGGAA TERM 936 738673 - 738660 - f 71 -5.3 -4.63952 | opp_overlap 738660, overlap 738656 AGTACAAACAAGAAA CCTTA TTTC TAAGG CTTCTGTCAACAATT TERM 937 738688 - 738727 + F 77 -10.2 -2.56914 | opp_overlap 738694, overlap 738694 GCTTCTGTCAACAAT TGGAAAGAGGCTTGGG GCGTTTAG CCCAAGTCTCTTTTTA TAAATTGCTAAAGTA TERM 938 738694 - 738721 + F 100 -9.2 -4.92314 | opp_overlap 738694, overlap 738688 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTTATAAATTGCT TERM 939 738721 - 738694 - f 70 -7 -3.72051 | opp_overlap 738688 738694 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTTATAAATTGCT TERM 940 738850 - 738834 - gf 72 -9.5 -2.7035 | opp_overlap 738833 738832 738848 TTTACTTAGATATGA TTCCTGA ATT TCAGGAA GGTTATGCTTCATAT SpyM3_0672 738761 - 739402 + | hypothetical protein hemN 739369 - 740595 + | coproporphyrinogen III oxidase SpyM3_0674 740605 - 741357 + | putative acyl-ACP thioesterase SpyM3_0675 741357 - 742121 + | hypothetical protein SpyM3_0676 742121 - 742753 + | hypothetical protein TERM 941 742819 - 742789 - f 70 -8.4 -3.23708 | opp_overlap 742794, overlap 742794 TTTCCCTAAAAATGA TAAAACAAGCGTTT TGA AAGCGCTTGTTTTT TAGTTTGCAGTCAGA TERM 942 742814 - 742794 - f 86 -8.3 -4.72556 | opp_overlap 742794, overlap 742789 CTAAAAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTAGTTTGCAG TERM 943 742794 - 742814 + F 100 -10.5 -5.37593 | opp_overlap 742794 742789 CTAAAAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTAGTTTGCAG TERM 944 742872 - 742858 - f 100 -11.4 -5.58074 | opp_overlap 742857 742856 GAAGTATCAAAAAAA GCACCG ACT CGGTGC CACTTTTTCAAGTTG TERM 945 743338 - 743350 + G 74 -4.1 -5.14563 | opp_overlap 743316 ATAGTTTCTTTCATC GACTT GAA GAGTC TTTTTTGGTGGAAGA SpyM3_0677 743040 - 747146 + | hypothetical protein TERM 946 747249 - 747263 + G 70 -3.6 -4.89477 | CGGAGCTGATCCATT TATCAG AAA TTGATA TTTTGTTATTAGAAA TERM 947 747507 - 747522 + G 73 -7.6 -4.09685 | ATCAATCTTGCTATC TAGGAG CATG CTCCTA TTTTGAAAAATCCCA SpyM3_0678 747146 - 748015 + | hypothetical protein SpyM3_0679 748027 - 748353 + | hypothetical protein SpyM3_0680 748343 - 749005 + | hypothetical protein SpyM3_0681 750409 - 749213 - | putative integrase - phage associated TERM 948 750369 - 750388 + g 76 -3.6 -5.31091 | overlap 750371 CCTTTTAGCGTTTCG TACCAAAA AATA TTTGGGTA TTTTGTTTTGTTATA TERM 949 750544 - 750579 + r 86 -5.4 -5.75599 | TATTGATTGCATATT GCCTCACGCTCT CCTCGCCAAAAT TGAGCGTGGGGC TTTTTTTATAATTTA TERM 950 750631 - 750608 - R 90 -8.2 -5.12916 | opp_overlap 750608 TATAAAATAATAAAA GCGATAACCA GAAA TAGTTACCGC TTAGGTGTGGCAGCT SpyM3_0682 751460 - 750720 - | hypothetical protein SpyM3_0683 751863 - 751471 - | hypothetical protein SpyM3_0684 752256 - 751867 - | putative repressor - phage associated SpyM3_0685 752506 - 752781 + | hypothetical protein SpyM3_0686 752816 - 753028 + | hypothetical protein TERM 951 753162 - 753140 - f 93 -7.8 -5.45802 | opp_overlap 753140 TTGGCAAAAGAAAAA TCACCAGTTA AGT CAACTGATGA TTGATAGTCTTGAGG TERM 952 754343 - 754329 - g 72 -3.6 -5.1101 | GGACTACCTAAAAAA TGAACA ACC TATTCA TCCCAGCTTTGCCCA SpyM3_0687 753907 - 754626 + | putative antirepressor - phage associated TERM 953 754655 - 754636 - f 74 -6.4 -4.32678 | overlap 754633 GTGTGAAAGAAAGAA GCACATGC GGGA ACATGCGC TTAACAAAAATGAAC SpyM3_0688 754700 - 754957 + | hypothetical protein SpyM3_0689 755050 - 755241 + | hypothetical protein SpyM3_0690 755537 - 756877 + | putative DNA polymerase III delta prime subunit - phage associated SpyM3_0691 756870 - 757631 + | hypothetical protein SpyM3_0692 757940 - 758443 + | hypothetical protein SpyM3_0693 758443 - 758670 + | hypothetical protein SpyM3_0694 758684 - 758890 + | hypothetical protein SpyM3_0695 758907 - 759341 + | hypothetical protein SpyM3_0696 759338 - 759622 + | hypothetical protein SpyM3_0697 759624 - 760256 + | hypothetical protein SpyM3_0698 760261 - 760773 + | hypothetical protein SpyM3_0699 760739 - 760924 + | putative single strand binding protein - phage associated SpyM3_0700 760939 - 761220 + | hypothetical protein SpyM3_0701 761217 - 761555 + | putaive immunity repressor protein - phage associated SpyM3_0702 761557 - 762384 + | hypothetical protein TERM 954 762625 - 762601 - g 75 -10.1 -3.09327 | TCACTTTACGCAACA TGGACATTTTC AAA GAAACTGTCCA AAAGCTAATAGAGGT SpyM3_0703 762486 - 762800 + | putative transcriptional activator - phage associated TERM 955 762911 - 762933 + F 85 -6.3 -5.38054 | opp_overlap 762911 TATTTCTGAGGAAAA GGCAAGGAC AATCC GTTCTTGTC TTTTTGTTTGTAGGA TERM 956 763199 - 763186 - g 81 -6.7 -4.78572 | TTCCAATTAATAAAA CTCTC AGAC GAGAG ATAGATAAGTATATC SpyM3_0704 762960 - 763535 + | putative recombinase - phage associated SpyM3_0705 763689 - 763982 + | hypothetical protein SpyM3_0706 764040 - 764243 + | hypothetical protein SpyM3_0707 764269 - 764655 + | hypothetical protein TERM 957 764819 - 764797 - g 71 -4.8 -4.53419 | GAGGACAACAACAAA CCTCGAAGTG GAT CACATCAAAG AGGTTAAGGACTATC SpyM3_0708 764681 - 764953 + | hypothetical protein SpyM3_0709 765094 - 765411 + | hypothetical protein SpyM3_0710 765424 - 767154 + | hypothetical protein TERM 958 767293 - 767283 - f 77 -5.4 -4.88163 | opp_overlap 767283 GGAACAGAAAAGAAA GCTA AAA TAGC ATTTGAAGATAGAAA TERM 959 767369 - 767384 + F 95 -9 -5.09685 | opp_overlap 767366 AGAAGATAAATTTTA GCACCT GACT AGGTGC TTTTTATATGTCTTA TERM 960 768281 - 768259 - g 72 -3.4 -5.02476 | ATATGGTTCAAAAAA CACAGGGTCT GTT AAATCCTATG TAGATGACATCAAAA SpyM3_0711 767522 - 768709 + | hypothetical protein SpyM3_0712 768690 - 769496 + | hypothetical protein TERM 961 770331 - 770321 - g 75 -5.4 -4.76644 | AACATCCACTAAAAA TTGC TGG GCAA GTTAAACTACTTTTG SpyM3_0713 769513 - 770646 + | hypothetical protein TERM 962 770762 - 770781 + G 80 -6.4 -4.83169 | CGTTTTGATGAGCTT TCAGCAAG TGTG CCTGCTGA TTTTTATGAAGAAGT SpyM3_0714 770660 - 770833 + | hypothetical protein SpyM3_0715 770833 - 771141 + | hypothetical protein SpyM3_0716 771134 - 771496 + | hypothetical protein SpyM3_0717 771498 - 771896 + | hypothetical protein SpyM3_0718 771889 - 772269 + | hypothetical protein SpyM3_0719 772281 - 772865 + | putative major tail protein - phage associated SpyM3_0720 772958 - 773260 + | hypothetical protein SpyM3_0721 773501 - 773298 - | hypothetical protein TERM 963 773443 - 773459 + gF 72 -5.8 -4.32046 | opp_overlap 773443 GGACGGTTAGGATAA GGTCTC TTTTT GAGGCC TTTAATTTTTGAGGA TERM 964 774433 - 774413 - gH 75 -6.9 -4.11216 | GCTGCATCTGGAAAA TTAGCTGGT CTG ACCAACCAA GAGATGTTAGCATTA TERM 965 775176 - 775163 - gH 73 -6.7 -4.25104 | GCTGCGGCACTAAAA GCACT TGAG AGTGC AGTTGAAGCATCAGG SpyM3_0722 773486 - 777586 + | hypothetical protein TERM 966 777823 - 777798 - g 76 -3.3 -5.19212 | gap 1 ATTATCATCAAAAAA CCAAGGATAGCT TAC AGCT-TACCTGG ACAGTCTATCTAAAG SpyM3_0723 777599 - 778369 + | hypothetical protein TERM 967 779807 - 779793 - g 74 -4.2 -5.16472 | overlap 779794 AAAAACCCTAAAAAA CCTAGC GTT GCCAGA AGAAGCCATCAAAAA SpyM3_0724 778366 - 780417 + | hypothetical protein TERM 968 781410 - 781383 - g 87 -5.1 -5.38047 | gap 1 TACGTAGATAAAAAA TTTG-ATGAGTT AAAAA AACTCATACAAA AAACAGATTAAGGAG hylP.1 780414 - 781421 + | hyaluronidase - phage associated TERM 969 782645 - 782630 - g 73 -7.6 -3.96624 | CACCTTTACCACAAA GATAGC AGAG GCTATC AAAATCAGAGCTGAC TERM 970 782827 - 782851 + G 74 -6.5 -4.32034 | overlap 782831 ATAGCGCTATGCTTA TTGATCTTAGC TCG GCTAAGATGGA TTTTAATAGTAATGC TERM 971 782831 - 782847 + G 71 -9.5 -2.78495 | overlap 782827 CGCTATGCTTATTGA TCTTAGC TCG GCTAAGA TGGATTTTAATAGTA SpyM3_0726 781431 - 783335 + | hypothetical protein SpyM3_0727 783347 - 783775 + | hypothetical protein SpyM3_0728 783778 - 784410 + | hypothetical protein TERM 972 784656 - 784643 - g 85 -6.7 -5.02715 | AGAGCAAATTAAAAA CCTCA ATCG TGAGG TAAGAGAACTTAAAG SpyM3_0729 784422 - 784694 + | hypothetical protein SpyM3_0730 784691 - 784918 + | hypothetical protein TERM 973 786069 - 786048 - g 84 -12.3 -2.94062 | opp_overlap 786046 GAGATCAATATCAGA CGCTGGCCA AGTC TAGCCAGCG AGGTTGTAGGTATCT SpyM3_0731 785034 - 786242 + | putative holin - phage associated TERM 974 786282 - 786269 - T 73 -3.8 -5.14563 | GCCGGTAGCAAAAAA GGAG GTAAAG CTCC AAGATAAGACAAAAC TERM 975 786325 - 786292 - T 72 -8.2 -3.41292 | opp_overlap 786297, overlap 786297 AGCTCCAAGATAAGA CAAAACCGCTCAGA TTAATT TCTGGGCGGTTTTT TGTGTGTCTAAAAAA TERM 976 786297 - 786320 + T 100 -10.3 -5.4492 | opp_overlap 786292 786297 CAAGATAAGACAAAA CCGCTCAGA TTAATT TCTGGGCGG TTTTTTGTGTGTCTA TERM 977 786320 - 786297 - T 86 -8.1 -4.79373 | opp_overlap 786297, overlap 786292 CAAGATAAGACAAAA CCGCTCAGA TTAATT TCTGGGCGG TTTTTTGTGTGTCTA TERM 978 786357 - 786341 - T 73 -4.3 -5.00616 | overlap 786353 TGTGTGTCTAAAAAA GCAGCAA TAT TAGCCGC TCAAATATTAATCGA SpyM3_0732 786714 - 786358 - | hypothetical protein TERM 979 786769 - 786746 - R 79 -9.6 -3.22091 | opp_overlap 786750, overlap 786750 ACGGCAATTTACCAA TAAAGGGGGC AGTT GCCCTCTTTA TACTAAAATTCAAAT TERM 980 786750 - 786765 + r 79 -8.2 -3.97834 | opp_overlap 786746 786750 CAATTTACCAATAAA GGGGGC AGTT GCCCTC TTTATACTAAAATTC SpyM3_0733 787011 - 786772 - | hypothetical protein TERM 981 787178 - 787163 - R 83 -4.7 -5.52079 | opp_overlap 787163 787161 AGACTAAAACAAAAA GTCCT TTTTAT AGGAC TGTTTTTGTTGCCAG SpyM3_0734 787526 - 787275 - | hypothetical protein TERM 982 787634 - 787651 + r 73 -9.1 -2.94912 | opp_overlap 787624 AATAAGGACAGGGTA GGGGAGT TACT GCTCCCC TCTGTCCATTAGCGA SpyM3_0735 787813 - 787667 - | hypothetical protein TERM 983 787851 - 787867 + H 79 -8.1 -3.94276 | opp_overlap 787853 CTTATGATATTATTA TACAAGA TTA TCTTGTA TTTGTAAAGTGTTTT SpyM3_0736 787967 - 788176 + | hypothetical protein TERM 984 788267 - 788290 + F 87 -6.8 -5.54894 | gap 1, opp_overlap 788267 AATCCATAAATTAAA CAGACT-GCAG TTT TTGCCAGTCTG TTTTTTTAGTCCATT TERM 985 788327 - 788342 + F 71 -5.4 -4.60487 | opp_overlap 788327 788329 GACTAAAACAAAAAA GTCCTT TTTA AGGGAC TTTTTACGAATAATA TERM 986 788342 - 788327 - f 89 -3.2 -5.83211 | opp_overlap 788327, overlap 788329 GACTAAAACAAAAAA GTCCTT TTTA AGGGAC TTTTTACGAATAATA TERM 987 788580 - 788563 - f 93 -5.6 -6.04953 | opp_overlap 788562 AGACAAATAAAAAAA GACCTT GTCCAA AAGGTC GTGGTATAGTCGGGG TERM 988 789246 - 789263 + F 84 -5.5 -5.58179 | opp_overlap 789246, overlap 789248 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 989 789263 - 789246 - f 83 -7.7 -4.65747 | opp_overlap 789246 789248 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 990 789436 - 789421 - g 72 -9 -3.40175 | overlap 789417 789419 ATTTTGGAAAAGACA GAGACG GTTT CGTCTC GTGAAATGCAGGCTC TERM 991 791088 - 791110 + G 83 -9.2 -3.9693 | overlap 791090 TGGTTCTGTCGAAGT CCCTCAAGAA GCC TTCTTGAGTG TTCTTTCAATGGATG TERM 992 791090 - 791108 + G 79 -10.4 -3.57185 | overlap 791088 GTTCTGTCGAAGTCC CTCAAGAA GCC TTCTTGAG TGTTCTTTCAATGGA lepA 789310 - 791142 + | GTP-binding protein LepA sclB 791329 - 793050 + | collagen-like protein SclB TERM 993 793057 - 793078 + F 100 -13.1 -5.08824 | opp_overlap 793054 793053 793057 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA TERM 994 793078 - 793057 - f 87 -13.1 -2.82666 | opp_overlap 793057, overlap 793054 793053 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA csrA 793203 - 793640 + | methionine sulfoxide reductase B TERM 995 794201 - 794229 + G 78 -4 -5.22289 | gap 1, overlap 794204 794209 CATTAAGGCAAAGGA TGA-TGAGGTTGC TAAG GCAATTTCAGTCA TTTTTCTCTTTAATA SpyM3_0740 793770 - 794789 + | hypothetical protein TERM 996 794820 - 794800 - f 83 -11.3 -2.73067 | opp_overlap 794800, overlap 794804 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 997 794800 - 794820 + F 100 -11.3 -5.80248 | opp_overlap 794800 794804 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 998 794956 - 794970 + F 71 -3.5 -5.1356 | TGAGATAAGCAATTA CCGTT TACTC AGCGG TTTTTGTTAATAGAG SpyM3_0741 794996 - 795421 + | PTS system, mannose/fructose family IIA component TERM 999 795600 - 795590 - g 71 -6.8 -4.13304 | AAATGACGCTTAAAA TGGC TGT GCCA AACGGCATGAAACTG SpyM3_0742 795448 - 795939 + | PTS system, mannose/fructose family IIB component SpyM3_0743 796085 - 796765 + | PTS system, mannose/fructose family IIC component SpyM3_0744 796762 - 797589 + | PTS system, mannose/fructose family IID component TERM 1000 797608 - 797641 + F 100 -14.1 -5.0925 | opp_overlap 797608 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA TERM 1001 797641 - 797608 - f 93 -9.7 -4.24342 | opp_overlap 797608 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA TERM 1002 798097 - 798109 + G 74 -4.9 -4.76041 | opp_overlap 798093 798097 TTTGCTAGTAACCCA CATTT AGG AAATG TTTTTAGTAAATCTG SpyM3_0745 797725 - 799374 + | putative two-component sensor histidine kinase TERM 1003 799951 - 799938 - g 84 -6.7 -4.98616 | opp_overlap 799938 799937 TCAAAATATCAAAAA GCATC TTCA GATGC CTTTAAGTGATTACA SpyM3_0746 799378 - 800166 + | putative two-component response regulator TERM 1004 801037 - 801026 - g 70 -5.8 -4.45485 | ATCAGATGTACAAAA TGCC TTTG GGCA GTCAACTAGTAATAG SpyM3_0747 800160 - 801206 + | putative periplasmic-iron-binding protein TERM 1005 802184 - 802174 - g 75 -5.4 -4.75219 | GAATTATTAACAAAA GTCT TCA AGAC AGCCAAATGGGGTGA SpyM3_0748 801319 - 802689 + | putative succinic semialdehyde dehydrogenase TERM 1006 803289 - 803238 - g 81 -7 -4.77896 | gap 1, opp_overlap 803238 803237 803235, overlap 803239 TAATGAAGTTAAAAA GTTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAAG GTCTGTTTTTATTAC TERM 1007 803288 - 803239 - g 79 -10.5 -3.45653 | gap 1, opp_overlap 803238 803237 803235, overlap 803238 AATGAAGTTAAAAAG TTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAA GGTCTGTTTTTATTA uvrC 802819 - 804615 + | excinuclease ABC subunit C SpyM3_0750 804799 - 805401 + | NAD(P)H-dependent quinone reductase SpyM3_0751 805526 - 806935 + | dipeptidase PepV TERM 1008 806978 - 806956 - T 100 -16.4 -4.82667 | opp_overlap 806956 TTATGACAGCAAAAA GAGCTGGAAC ACT GTTCCAGCTC TTTTGTGATGATTAG TERM 1009 806956 - 806978 + T 100 -16.4 -4.51097 | opp_overlap 806956 TTATGACAGCAAAAA GAGCTGGAAC ACT GTTCCAGCTC TTTTGTGATGATTAG trmE 808379 - 807003 - | tRNA modification GTPase TrmE TERM 1010 807753 - 807770 + g 73 -7.1 -4.12066 | TGTTCGAAGGAGATT TTCCAAA AGGC TTTGGAA TTCTTGTGTTTTCTC TERM 1011 808575 - 808562 - H 70 -2.3 -5.24129 | GGTTTTGATAAAAAA CTGAC CTAA GACAG CAGGGGAGCATGCTC TERM 1012 808647 - 808668 + H 84 -3.7 -5.64274 | AACGTATTTGTACTT TCGTGTCTA GGTT TAGGTGCGA TTTTTTTGTACCTAG rplJ 808712 - 809212 + | 50S ribosomal protein L10 rplL 809277 - 809642 + | 50S ribosomal protein L7/L12 TERM 1013 809681 - 809703 + F 100 -15 -5.50499 | AAATAAGCTGATTAG CCCGCTATTT TTA AAATAGCGGG TTTTTTTGAATATCA SpyM3_0755 809869 - 811116 + | putative D,D-carboxypeptidase, penicillin-binding protein TERM 1014 811153 - 811184 + T 100 -14 -4.99134 | opp_overlap 811153 AAAACAATCAAAAAA GACAGTTATGAAAG AATT TTTTCATAACTGTC TTTTTAGTTTACAGT TERM 1015 811184 - 811153 - T 100 -13.3 -5.43514 | opp_overlap 811153 AAAACAATCAAAAAA GACAGTTATGAAA GAATTT TTTCATAACTGTC TTTTTAGTTTACAGT SpyM3_0756 812194 - 811232 - | hypothetical protein TERM 1016 812010 - 812031 + g 71 -6 -4.21812 | GTTTCTTTTTTTGCC GTCTTTTT GTGATG AAAAAGAC TTATTTTAGGTACAA TERM 1017 812253 - 812267 + H 86 -2.8 -5.80727 | opp_overlap 812253, overlap 812245 TTTTAGAGAAAAGAA GGCT TGAAGTC AGCC TTTTTTCTTGTTTTT SpyM3_0757 812282 - 812437 + | hypothetical protein folC.1 812527 - 813804 + | dihydrofolate synthase folE 813821 - 814423 + | GTP cyclohydrolase I folP 814432 - 815232 + | dihydropteroate synthase folQ 815239 - 815598 + | dihydroneopterin aldolase folK 815595 - 816083 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 1018 816085 - 816101 + F 75 -7.3 -4.12188 | opp_overlap 816085 816087 TTTCAGCTCAATAGA CAGAGTT CTA GACTCTG TTTTCGGAGTAATGC TERM 1019 816187 - 816201 + F 93 -7.1 -5.42862 | opp_overlap 816187 TTTGATATAATAGTA TCGGC TTTAT GCCGA TTTTTTTACGCGTAT murB 816245 - 817132 + | UDP-N-acetylenolpyruvoylglucosamine reductase potA 817178 - 818332 + | putative spermidine/putrescine ABC transporter ATP-binding protein potB 818316 - 819110 + | putative spermidine/putrescine ABC transporter (permease protein) potC 819107 - 819883 + | putative spermidine/putrescine ABC transporter (permease protein) potD 819876 - 820949 + | putative spermidine/putrescine ABC transporter (periplasmic transport protein) TERM 1020 820954 - 820986 + T 73 -9.3 -2.87564 | opp_overlap 820953 820951 820961, overlap 820961 ATCGCAAATAAGCAC TCAAAAAGGCTGG TATTTCT CCAGCCTTTTTAA TGTATCGACAGATGA TERM 1021 820961 - 820979 + T 88 -7.4 -4.84527 | opp_overlap 820961 820953 820951, overlap 820954 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA TERM 1022 820979 - 820961 - T 83 -7.4 -4.71382 | opp_overlap 820954 820961, overlap 820953 820951 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA SpyM3_0768 821669 - 821004 - | putative two-component response regulator SpyM3_0769 823191 - 821650 - | putative two-component sensor histidine kinase TERM 1023 821704 - 821720 + g 71 -7.3 -3.95022 | opp_overlap 821704 TGTTGTCACTGAGAA CTGTAAC TCG GTTACGG TTTGATGTTGATGGA TERM 1024 822426 - 822450 + g 79 -10 -3.54459 | GGTGATTGAAACTGT TGCCAGTAGG TTTTC CCAACTGGCA TTTCCGAGCAATTAA TERM 1025 822639 - 822629 - G 89 -6.8 -5.26247 | CGAAAAGAAATAAAA CTGG TGA CCAG TAAACTAATAAGAAG TERM 1026 824413 - 824401 - g 70 -7.7 -3.6422 | opp_overlap 824389 824400, overlap 824399 TATCCCCTTAAAAGA GGTTG TGG CAACC CTTAGCTGGCAATAT malP 823352 - 824683 + | putative L-malate permease SpyM3_0771 824714 - 825880 + | NAD-dependent malic enzyme TERM 1027 825915 - 825961 + T 90 -13.5 -3.12378 | gap 1, opp_overlap 825915 825923, overlap 825923 AAGTTATACTTTAAA TCACAAAATAAGTAGAAACATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1028 825961 - 825915 - T 100 -15.7 -3.64371 | gap 1, opp_overlap 825915 825923, overlap 825923 AAGTTATACTTTAAA TCACAAAATAAGTAGAAACATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1029 825953 - 825923 - T 71 -5.7 -4.61566 | gap 1, opp_overlap 825923 825915, overlap 825915 CTTTAAATCACAAAA TAAGTAGAAACATA TTTC TA-GCTTCTACTTA TTTTGTGATTAGCTA SpyM3_0772 827011 - 825962 - | putative zinc-containing alcohol dehydrogenase TERM 1030 826896 - 826908 + g 71 -4.8 -4.58395 | opp_overlap 826906 ATATGCAAATCAGTT CCAC AAATA GTGG TTTTTACCAACTGGA TERM 1031 827526 - 827543 + G 76 -7.1 -4.15106 | opp_overlap 827538 CCAGGCTCATTTGAT TTTTTGC ATAA GCAAAAA TTTTGGGACTTAGTC aphA 827247 - 827978 + | acid phosphatase/phosphotransferase TERM 1032 828026 - 828053 + F 83 -6.2 -5.15969 | opp_overlap 828044 AATTTCTTTCATCAC CCCACTGAGTAA CCAA TAGCCCAGTGGG TTTTTTGGGTTACAG TERM 1033 828426 - 828414 - g 82 -7.7 -4.53303 | overlap 828418 GATTCTGATATAAAA GGATC AGG GATCC CCCATGTCGAAGGAG TERM 1034 828756 - 828766 + G 74 -4 -5.05113 | GCGCTAGTGGCTAGT TTAG TGG CTAA TTTTATTTCTCTGAA TERM 1035 829147 - 829158 + G 89 -4.4 -5.54264 | overlap 829155 GTTATGGAAGTGGCT TACC TGGA GGTA TTTTTTTACCTATTT SpyM3_0774 828156 - 829688 + | hypothetical protein SpyM3_0775 829851 - 830465 + | hypothetical protein SpyM3_0776 830645 - 831772 + | hypothetical protein TERM 1036 831761 - 831782 + F 89 -6.7 -5.626 | gap 1, opp_overlap 831761 GCTATTCAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA TERM 1037 831782 - 831761 - f 95 -6.7 -5.81412 | gap 1, opp_overlap 831761 GCTATTCAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA radC 831872 - 832501 + | DNA repair protein RadC SpyM3_0778 833198 - 832503 - | putative glutamine amidotransferase, class I SpyM3_0779 833852 - 833208 - | redox-sensing transcriptional repressor Rex TERM 1038 833974 - 833957 - R 88 -7.1 -5.1101 | GTATGAGTTAAAAAA GCTAAAA TTAG TTTTAGC ACTATATAATAGTAT SpyM3_0780 834451 - 834104 - | hypothetical protein SpyM3_0781 835568 - 834441 - | putative iron-sulfur cofactor synthesis protein TERM 1039 835107 - 835117 + g 71 -6.8 -4.0802 | opp_overlap 835107, overlap 835103 GTCCTTAATAGGTAA CAGG TCA CCTG TTTCGTTATTGGCAT prs 836545 - 835565 - | ribose-phosphate pyrophosphokinase TERM 1040 836642 - 836671 + r 81 -10.9 -2.75349 | opp_overlap 836644 836650, overlap 836639 836638 ACATCCCTATTTTAA CAGAAAAACAGAA AAAT TTCAGTTTTTCTG TCGCTTTTAGCCATT TERM 1041 836671 - 836650 - R 83 -6 -5.09762 | opp_overlap 836642 836639 836638, overlap 836644 ATTTTAACAGAAAAA CAGAAAAA TTTCAG TTTTTCTG TCGCTTTTAGCCATT SpyM3_0783 837263 - 836685 - | hypothetical protein TERM 1042 837017 - 837068 + g 73 -6.6 -4.21768 | opp_overlap 837007 TCATATCTTTTGCTT GTTCAAGAAAAAGAGGGACATTGT ACTC ACGATTCCCCACTTTTTCTGGCAC TTTTAAGGTTAATTC SpyM3_0784 837351 - 838022 + | putative GTP pyrophosphokinase ppnK 837997 - 838833 + | inorganic polyphosphate/ATP-NAD kinase rluD 838830 - 839735 + | putative ribosomal large subunit pseudouridine synthase eutD 839739 - 840734 + | phosphotransacetylase TERM 1043 840836 - 840816 - f 83 -7.5 -4.79223 | opp_overlap 840816 TGACATTATTAAAAA CGAGTTGGC CAG ACCATCTCG TTTTTTTTGAAGGTG TERM 1044 840816 - 840836 + F 89 -6.8 -5.76949 | opp_overlap 840816 TGACATTATTAAAAA CGAGTTGG CCAGA CCATCTCG TTTTTTTTGAAGGTG SpyM3_0788 840861 - 841175 + | putative oxidoreductase, short chain dehydrogenase/reductase SpyM3_0789 841172 - 841621 + | putative oxidoreductase, short chain dehydrogenase/reductase SpyM3_0790 842503 - 841814 - | Na+ driven multidrug efflux pump TERM 1045 841849 - 841875 + g 78 -7.3 -4.33819 | gap 1, opp_overlap 841833 841828, overlap 841849 841850 841872 GACCTGATGTCACAT C-GGACCAGCCA ACAA TGGCTTGTCCAG TTTCTTCTAAATACT TERM 1046 841850 - 841873 + g 76 -11 -2.51259 | opp_overlap 841833 841828, overlap 841849 841849 841872 ACCTGATGTCACATC GGACCAGCCA ACAA TGGCTTGTCC AGTTTCTTCTAAATA SpyM3_0791 842926 - 843654 + | putative ABC transporter ATP-binding protein TERM 1047 843637 - 843667 + F 71 -7.6 -3.55203 | GCCAATTTATTTGGA GGTGATGAGCATGC CTA GTTTGTTTATCACC TTTCAAAACCGTTTT SpyM3_0792 843647 - 845173 + | putative ABC transporter (binding protein) TERM 1048 845181 - 845201 + F 84 -6.1 -5.27399 | AGAAATAAACAGAAA TGTTGGTCC GTA GGACTGGCA TTTTTTCGTCTCTTA SpyM3_0793 845451 - 846434 + | guanosine 5'-monophosphate oxidoreductase TERM 1049 846664 - 846710 + F 71 -3.2 -5.20783 | gap 2, opp_overlap 846674, overlap 846665 846674 CTTGCTTGGTTTTTA ACCT--TGCAAAGCGAGAAACT CTTAT AGTTTCTCACTTTGCGGCAGGC TTTTTCTATTTGAAT TERM 1050 846698 - 846674 - f 80 -9.4 -3.57561 | opp_overlap 846674 846665 846664 TTTTAACCTTGCAAA GCGAGAAACT CTTAT AGTTTCTCAC TTTGCGGCAGGCTTT xpt 846739 - 847320 + | xanthine phosphoribosyltransferase TERM 1051 848020 - 848049 + G 71 -6.5 -4.13872 | CTTTTGAAATCACTT CTATTGTGATGAT GTGT ATCATCGCAACGG TTTCTATGGTTGAAT SpyM3_0795 847320 - 848603 + | putative purine (xanthine) permease TERM 1052 848612 - 848626 + T 93 -7.1 -5.39721 | opp_overlap 848605 848612, overlap 848605 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA TERM 1053 848626 - 848612 - T 89 -7.1 -5.37865 | opp_overlap 848612 848605, overlap 848605 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA SpyM3_0796 849605 - 848667 - | putative thiamine biosynthesis lipoprotein precursor TERM 1054 849032 - 849060 + g 72 -9.7 -3.07816 | opp_overlap 849032 849028, overlap 849018 GTTTTTGAATACCAA TTCGAAAAGTCTT GTC AGGGCTTTTCGGA TTAGGTCCATGAACG TERM 1055 849652 - 849629 - R 87 -11 -3.40403 | opp_overlap 849627 849626, overlap 849631 CTCTTTTTAGCAGAA TACCCCCACT AAGG AGTGGGGGAA GGTCATTATGATTTT TERM 1056 849650 - 849631 - R 93 -13.6 -3.27475 | opp_overlap 849627 849626, overlap 849629 CTTTTTAGCAGAATA CCCCCACT AAGG AGTGGGGG AAGGTCATTATGATT SpyM3_0797 849843 - 849658 - | 4-oxalocrotonate tautomerase tdk 850011 - 850550 + | thymidine kinase TERM 1057 850952 - 850966 + G 75 -5.6 -4.78107 | GTGGTGCTGCTGGTG GCGATG AGG CAGCGC TTTTTGCTGGTGATC TERM 1058 851457 - 851441 - g 77 -9.5 -3.5393 | overlap 851451 ACCATTTTGCGCAAA TTGCTCA AGA TGAGCAA GATGCTGAACGTAAA prfA 850585 - 851664 + | peptide chain release factor 1 hemK 851664 - 852503 + | putative protoporphyrinogen oxidase SpyM3_0801 852487 - 853077 + | hypothetical protein SpyM3_0802 853095 - 853547 + | hypothetical protein TERM 1059 854417 - 854434 + G 79 -6.9 -4.57073 | opp_overlap 854417 854415 CTATTATTGATAATA CTGCGGC TATG GCAGCAG TTTTTGCACAAGATG glyA 853537 - 854793 + | serine hydroxymethyltransferase SpyM3_0804 854800 - 855777 + | hypothetical protein SpyM3_0805 855778 - 856377 + | hypothetical protein SpyM3_0806 856502 - 858112 + | putative ABC transporter ATP-binding protein TERM 1060 858131 - 858152 + G 76 -7.3 -4.15044 | opp_overlap 858123 AAACAGATCATCACC TCCTAAAGC GAGT GCTTCAGGA TTTGTTAAAAAAACC TERM 1061 859282 - 859302 + G 84 -12.7 -3.08173 | opp_overlap 859282, overlap 859273 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT TERM 1062 859302 - 859282 - g 85 -12.7 -3.14211 | opp_overlap 859282 859273 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT SpyM3_0807 858109 - 859836 + | putative ABC transporter ATP-binding protein TERM 1063 859838 - 859861 + F 80 -6.8 -4.75308 | opp_overlap 859838 AAAAGATAGAATAAA GTTCGTCTTT TAAC AAAGGTGAAC TTTTTAAGTCTTCCT nox.1 860077 - 861447 + | putative NADH oxidase TERM 1064 861488 - 861464 - T 83 -7 -4.80882 | opp_overlap 861464 ATCTGATAGGAAAAA GCCAGAGCAG TTCAG CAGCACTGGC TTTTTTGCTTTTTAA TERM 1065 861464 - 861488 + T 93 -7.7 -5.54079 | opp_overlap 861464 ATCTGATAGGAAAAA GCCAGAGCAGT TCA GCAGCACTGGC TTTTTTGCTTTTTAA TERM 1066 861604 - 861578 - T 78 -7.5 -4.23723 | gap 1, opp_overlap 861578 861579 861584, overlap 861584 GAATATCAGGCAAAA CA-AAAAGAGAC CGAA GTCTCTTTTGTG ATTAGTTTTTAGCAG TERM 1067 861584 - 861597 + T 76 -6.7 -4.59117 | opp_overlap 861584 861578, overlap 861579 861578 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT TERM 1068 861597 - 861584 - T 87 -6.7 -5.48213 | opp_overlap 861579 861578 861584, overlap 861578 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT ldh 862589 - 861606 - | L-lactate dehydrogenase TERM 1069 861675 - 861688 + g 72 -3.1 -5.09426 | AGCTTTCAATTGATT TGCAG AGGC TTGCA TTTTTTGCAATTCAG TERM 1070 865027 - 864992 - g 76 -3.4 -5.28166 | gap 1 GAAAAGGAATAAAAA CAGCTAATATTACCCCT AAA AATGGTCA-ATTAGCTG GATTGGTTACCGTAG gyrA 862780 - 865266 + | DNA gyrase subunit A TERM 1071 865827 - 865809 - g 85 -2.5 -5.76237 | opp_overlap 865819, overlap 865813 865819 CAGATAAAGAAAAAA TTTACGA ATACA TCATAAA AGATGTTTTCACGGT SpyM3_0811 865286 - 866035 + | putative sortase SpyM3_0812 866118 - 866531 + | hypothetical protein TERM 1072 866810 - 866829 + F 76 -6.6 -4.48175 | CGTATTAATGTTTTT TTATCTAT TGCG ATAGATAA TTTTACTTCAATTTT TERM 1073 867119 - 867100 - f 79 -3.6 -5.41746 | AACTTGCTAAAAAAA TGTTTAAC GATA GTAAAACA CCGTCTAAAAGAAAG SpyM3_0813 867145 - 867519 + | hypothetical protein TERM 1074 867570 - 867545 - T 79 -9.1 -3.41292 | opp_overlap 867551, overlap 867551 ACCTTTAAGATAAGA CAAAAAGTGCC ATTA GGCACTTTTTT AATCTTCTGTTGGAA TERM 1075 867564 - 867551 - T 90 -8.1 -5.18995 | opp_overlap 867551, overlap 867545 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG TERM 1076 867551 - 867564 + T 90 -8.1 -5.30189 | opp_overlap 867545 867551 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG SpyM3_0814 868480 - 867569 - | hypothetical protein hlyIII 869247 - 868597 - | hypothetical protein TERM 1077 869175 - 869191 + g 77 -8.7 -3.85704 | overlap 869177 TAGCAAATGCTCCGA TAGCGTG TGT CACGCTG TTTGCTACTTCCTCA TERM 1078 869177 - 869189 + g 74 -9.1 -3.51124 | overlap 869175 GCAAATGCTCCGATA GCGTG TGT CACGC TGTTTGCTACTTCCT SpyM3_0816 869684 - 869244 - | hypothetical protein TERM 1079 870418 - 870428 + G 70 -5.4 -4.37092 | ATTGGAAATTCTAGA TACC CCT GGTA TTTTATGGCCAAAAT rbgA 869903 - 870751 + | ribosomal biogenesis GTPase TERM 1080 871200 - 871188 - g 75 -7.7 -4.01419 | TATGAAGCAACCAAA CTAGC TAT GCTAG AAGCCATTAAACAGT rnhB 870741 - 871532 + | ribonuclease HII TERM 1081 871537 - 871553 + F 95 -5.9 -6.28401 | opp_overlap 871537 CTAATCCTTAAAAAG TTCTGTT TTT AGCAGAA TTTTTTTCTTTTTTA smf 871597 - 872433 + | Smf family DNA processing protein TERM 1082 872828 - 872815 - g 76 -2.3 -5.41746 | overlap 872802 AATTCTTTAAAAAAA GAAGC CAAA GCTGC TAAAAAAGTTTACTT TERM 1083 873339 - 873313 - g 76 -11 -2.64454 | overlap 873312 873310 CTAACAAATGAAGAT TTTCTTGTCAGC AAG GTTGACAAGAAA GAGCGACGTCGTAAT topA 872539 - 874668 + | DNA topoisomerase I TERM 1084 874674 - 874703 + G 100 -12.3 -5.1361 | opp_overlap 874680, overlap 874675 AATTAAATGAGGATT ACAAAAGAGGCTA CACA TAGCCTCTTTTGC TTTTTTCCCCTTTCT TERM 1085 874675 - 874702 + G 100 -15.8 -3.6654 | opp_overlap 874680, overlap 874674 ATTAAATGAGGATTA CAAAAGAGGCTA CACA TAGCCTCTTTTG CTTTTTTCCCCTTTC TERM 1086 874697 - 874680 - g 91 -9.9 -4.49311 | opp_overlap 874675 874674 ATGAGGATTACAAAA GAGGCTA CACA TAGCCTC TTTTGCTTTTTTCCC TERM 1087 875266 - 875254 - g 75 -2.7 -5.24129 | CCCTGGCAGAAAAAA TTCAC GCG GTAAA TGGTGGCGATGGATT TERM 1088 875426 - 875409 - g 79 -8.5 -4.13206 | ATGACCAAAGAAGAA TTCATGG CTTT CCATGAA GCTCTGACAACCGCA gid 874665 - 876149 + | tRNA (uracil-5-)-methyltransferase Gid TERM 1089 876163 - 876192 + F 84 -3.6 -5.68438 | opp_overlap 876152, overlap 876164 AACACTAAAAAAGAG TTCCTTTTCAGT TGAGTT GCTGAAGAGGAC TTTTTTATTTGCTGA TERM 1090 876164 - 876191 + F 73 -7.1 -3.99436 | opp_overlap 876152, overlap 876163 ACACTAAAAAAGAGT TCCTTTTCAGT TGAGTT GCTGAAGAGGA CTTTTTTATTTGCTG SpyM3_0822 876302 - 877708 + | oxaloacetate decarboxylase SpyM3_0823 877751 - 878065 + | hypothetical protein TERM 1091 878213 - 878183 - g 100 -14.1 -4.57482 | CTACTGAGAAAGAAA TGAATGCCAACGC TGCTG GCGGTGGCATTCA GGTAAAGGCTCCAAT SpyM3_0824 878065 - 878415 + | putative methylmalonyl-CoA decarboxylase gamma-subunit SpyM3_0825 878425 - 879555 + | putative methylmalonyl-CoA decarboxylase beta-subunit TERM 1092 879600 - 879622 + T 84 -6.3 -5.14563 | AATAAATCATTATCA GGAGTTGGA AGCAA TCTAGCTCC TTTTTTAGTAGAAAG citG 880640 - 879756 - | putative CitG protein,2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase SpyM3_0827 881328 - 880633 - | GntR family transcriptional regulator TERM 1093 881281 - 881296 + g 82 -6.2 -4.87133 | TTTCAAAGGGAGATT TCTTGA TAGG TCAAGA TTTTGTTTAACGGCT TERM 1094 881446 - 881413 - R 71 -5.4 -4.58663 | opp_overlap 881413 ATGAGTTCTGAAAAA TTAAAGCCATGCTC ACAAAA GGACATGACTTTAA TCATCTCATAAGGAA SpyM3_0828 882892 - 881486 - | putative Mg2+/citrate complex transporter TERM 1095 883099 - 883148 + H 90 -11.1 -3.87869 | AGTATCTTGATCTCA GTTTTTCAACAGTTACCTA AAAATAAAATAA AAGGTAACTGTTGAAAAAC TTTATGAAACATTGA SpyM3_0829 883269 - 883592 + | hypothetical protein SpyM3_0830 883646 - 884044 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit SpyM3_0831 884140 - 885210 + | putative decarboxylase beta subunit citD 885398 - 885706 + | citrate lyase subunit gamma TERM 1096 886509 - 886496 - g 74 -5.3 -4.81249 | CCTTAAATGGAAAAA TGGTT GATA AACCA ATCGTTGAACGTGCA citE 885694 - 886581 + | putative citrate lyase beta subunit citF 886584 - 888116 + | putative citrate lyase alpha subunit citX 888109 - 888687 + | 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase TERM 1097 888724 - 888712 - g 80 -7.7 -4.33105 | overlap 888714 CAATTATGACGAAAA TCCGT ATA ACGGA AACAGTTTTACGTGA oadA 888702 - 890096 + | oxaloacetate decarboxylase TERM 1098 890196 - 890170 - T 100 -10.3 -4.93316 | opp_overlap 890170 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTTATCTTAGT TERM 1099 890170 - 890196 + T 100 -8.1 -5.82172 | opp_overlap 890170 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTTATCTTAGT citC 891259 - 890207 - | putative citrate lyase synthetase (citrate (pro-3S)-lyase ligase) TERM 1100 890714 - 890697 - G 71 -4.9 -4.65895 | gap 1, overlap 890678 890698 890701 TTTCGTACTGAAAAA GGAACCAA GCT TTGGT-CC TCACTAACCATAAAC SpyM3_0838 891830 - 891348 - | hypothetical protein TERM 1101 892498 - 892537 + r 93 -13.3 -3.49668 | TTGAAGCTATTTTTA CCTTTAATGTTACATAA AAATAA TTATGTAATATTAAAGG TTATCTAAAGCATTT xerS 893601 - 892531 - | site-specific tyrosine recombinase XerS TERM 1102 893046 - 893006 - G 74 -9.2 -3.47383 | gap 1, overlap 893004 AGTAGAGCAATAATA GCCAAATC-CCTCTCCTTA TTTT TACGGAAAGAAGATTTGGC ACGATTAGACAATTT TERM 1103 893142 - 893156 + g 91 -7.8 -5.29208 | overlap 893147 GCTTAATATTTTCCG CTCTGG AAG CCAGGG TTTCTTTTTTCTTTT TERM 1104 893147 - 893160 + g 100 -3.1 -6.07374 | overlap 893142 ATATTTTCCGCTCTG GAAGC CAGG GTTTC TTTTTTCTTTTTTGT TERM 1105 893754 - 893765 + H 82 -4.4 -5.42259 | opp_overlap 893748 TCGGAAAGATGTCAC GAGA CAAA TCTC TTTTTTTACAGATAC TERM 1106 894058 - 894035 - H 75 -9.8 -2.62263 | overlap 894050 ATTTTTTTGATACTA TTAGTAAAGT TATA ACTTTACTAA AGGAGCTACCAAATG SpyM3_0840 894071 - 894769 + | putative repressor protein TERM 1107 894877 - 894906 + T 83 -6.5 -4.9251 | opp_overlap 894882, overlap 894882 AATGAATTTCACATC AAAAAGAGACGAA AATT TCCGTCTCTTTTA TTTTCGTTTTTTCTT TERM 1108 894882 - 894901 + T 85 -6.4 -5.24291 | opp_overlap 894882, overlap 894877 ATTTCACATCAAAAA GAGACGAA AATT TCCGTCTC TTTTATTTTCGTTTT TERM 1109 894901 - 894882 - T 93 -8.6 -4.80882 | opp_overlap 894877 894882 ATTTCACATCAAAAA GAGACGAA AATT TCCGTCTC TTTTATTTTCGTTTT ffh 896466 - 894904 - | putative signal recognition particle -inhibited division protein ylxM 896822 - 896481 - | hypothetical protein TERM 1110 896907 - 896888 - R 75 -5 -5.00616 | opp_overlap 896889 896892, overlap 896889 TGTTCGTGTAAAAAA GGAAGTCA TAAA TGACTTCT TTACTAATTATTTTC TERM 1111 896906 - 896889 - R 77 -8.5 -3.60048 | opp_overlap 896889 896892, overlap 896888 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT TERM 1112 896889 - 896906 + r 82 -8.5 -3.91642 | opp_overlap 896888 896889, overlap 896892 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT SpyM3_0843 897609 - 896911 - | GntR family transcriptional regulator SpyM3_0844 899125 - 897692 - | hypothetical protein TERM 1113 898104 - 898115 + g 72 -4.4 -4.83169 | AATTCTGGCGCATAG CCAA TAAA TTGG TTTTTCTCAAACAAT guaA 899292 - 900854 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1114 900910 - 900855 - T 100 -23.2 -3.68222 | gap 1, opp_overlap 900857 900860 900864, overlap 900857 900860 900864 900872 GTTGAATGGGAATAA CAGAATAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTATTCTT TAACTGTTTTCGTAT TERM 1115 900908 - 900857 - T 100 -25.8 -3.42069 | gap 1, opp_overlap 900857 900860 900864, overlap 900855 900860 900864 900872 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1116 900857 - 900908 + T 100 -25.8 -3.85786 | gap 1, opp_overlap 900855 900857 900860 900864 900872, overlap 900860 900864 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1117 900905 - 900860 - T 100 -21.7 -3.8372 | gap 1, opp_overlap 900860 900857 900864, overlap 900857 900855 900864 900872 ATGGGAATAACAGAA TAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1118 900860 - 900905 + T 100 -21.7 -4.03611 | gap 1, opp_overlap 900857 900855 900860 900864 900872, overlap 900857 900864 ATGGGAATAACAGAA TAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1119 900901 - 900864 - T 100 -18.1 -4.51763 | gap 1, opp_overlap 900864 900860 900857, overlap 900860 900857 900855 900872 GAATAACAGAATAAA CATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1120 900864 - 900901 + T 100 -18.1 -4.58585 | gap 1, opp_overlap 900860 900857 900855 900864 900872, overlap 900860 900857 GAATAACAGAATAAA CATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1121 900893 - 900872 - T 93 -9.5 -4.55446 | gap 1, opp_overlap 900864 900860 900857, overlap 900864 900860 900857 900855 GAATAAACATTAAAA GACTCGC-CA AAA TGAGCGAGTC TTTTAATGTTTATTC murM.2 902119 - 900896 - | putative anti resistance factor TERM 1122 902378 - 902365 - R 93 -5.3 -6.0427 | opp_overlap 902365 902358 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA TERM 1123 902365 - 902378 + r 82 -5.3 -5.30155 | opp_overlap 902365, overlap 902358 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA SpyM3_0847 904028 - 902484 - | ABC transporter ATP-binding protein TERM 1124 902697 - 902680 - G 78 -2.7 -5.48514 | overlap 902674 902670 ATCAACAAACAAAAA CGAAC TTTTGCTT GTTCG CCACCCGAAAGTACT TERM 1125 904057 - 904070 + r 81 -8.1 -4.17537 | opp_overlap 904057 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA TERM 1126 904070 - 904057 - R 90 -8.1 -5.14965 | opp_overlap 904057 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA SpyM3_0848 904719 - 904162 - | hypothetical protein pdxK 905563 - 904697 - | pyridoxamine kinase TERM 1127 906019 - 906031 + G 73 -7.7 -3.93288 | opp_overlap 906018 CTAGAAGAACTAAGG GAAGC TTT GCTTC TTTACTTAGCTGAAA TERM 1128 906538 - 906554 + G 71 -3.7 -5.00616 | overlap 906541 GCTCTAGTTTTACCG TCAGGTT TAA AACCTCA TTTTTTAACCCAAAA SpyM3_0850 905653 - 906921 + | hypothetical protein TERM 1129 907031 - 907020 - T 74 -3 -5.24129 | TGCCTGGATAAAAAA TCTA ACTA TAGA AGATCGGTTTTTATA TERM 1130 907316 - 907343 + T 100 -14.4 -3.62591 | opp_overlap 907316 TAGTAGCAAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC TERM 1131 907343 - 907316 - T 100 -14.4 -5.88471 | opp_overlap 907316 TAGTAGCAAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC SpyM3_0851 907730 - 907392 - | putative anaerobic ribonucleotide reductase TERM 1132 907915 - 907895 - R 100 -12.7 -5.52347 | AATAAAATTAAAAAA GGATTGAGA ATA TCTCAATCC AAGGGGCATTCTTAA TERM 1133 908024 - 908009 - R 76 -7.6 -4.07568 | CTCCCCTGCGCAAAA GTGACT TTGC AGTCAC AATCGACTCATCGCA SpyM3_0852 909646 - 908069 - | putative cardiolipin synthetase TERM 1134 909704 - 909724 + r 100 -12.7 -4.72272 | opp_overlap 909698 909697 GGAAGAAAGGAGCGC TTGCTCGAA TTA TTCGAGCAA TTTTTCCTAAAAGAG fhs.1 911401 - 909731 - | formate--tetrahydrofolate ligase lplA 912548 - 911529 - | putative lipoate-protein ligase TERM 1135 912099 - 912089 - G 73 -6.8 -4.29738 | CCACATCTAGCAAAA GGGA ATA TCCC CCATAAACACGGCCA SpyM3_0855 913371 - 912595 - | SIR2 family protein TERM 1136 913098 - 913080 - G 72 -4.6 -4.66833 | overlap 913081 CTTGAATGTGAAAAA TGTTATGA GGA TCATAACC AGCCACCCAAAAAGC SpyM3_0856 914251 - 913469 - | hypothetical protein SpyM3_0857 914606 - 914274 - | putative glycine cleavage system H protein SpyM3_0858 915646 - 914648 - | hypothetical protein SpyM3_0859 916842 - 915643 - | putative trimethylamine dehydrogenase SpyM3_0860 917576 - 916839 - | hypothetical protein TERM 1137 917828 - 917810 - H 85 -8.8 -4.2586 | opp_overlap 917807 917810 917810, overlap 917815 CCATATTAATACAAA CGCAAGAC AAT GTCTGGCG TCATTATCTTCCGTT TERM 1138 918255 - 918273 + G 82 -3.8 -5.40072 | overlap 918258 918259 CCGAAAATCTCATCT GCATCTGA TTA TCAGGTTC TTTTTTTGAAAAAAA dpfB 917871 - 918563 + | phosphopantothenate--cysteine ligase dfp 918556 - 919101 + | phosphopantothenoylcysteine decarboxylase TERM 1139 919574 - 919584 + G 78 -4 -5.20328 | ATACTATATTTGTAT TATC TGG GATA TTTATTTTTTTCGCG SpyM3_0863 919159 - 919728 + | hypothetical protein TERM 1140 921110 - 921083 - g 70 -2.7 -5.07486 | opp_overlap 921107 GAGTTTGAAGAAAAA CATAACCACAC CTATAT GTTTGGTTTTG AAGAAAGCTTCGGAT pgmA 919904 - 921622 + | putative phosphoglucomutase TERM 1141 921688 - 921666 - T 100 -11.4 -5.00412 | opp_overlap 921666 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1142 921666 - 921688 + T 100 -9.2 -4.88711 | opp_overlap 921666 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1143 921801 - 921760 - T 95 -8.8 -5.055 | opp_overlap 921760 GTAAGTCCCAAAAAA GCACCCTTAAAGCTAGAC CTAACT ATCTTGCTTTAGGAGTGC TGTTAAACCTCACTA SpyM3_0865 922661 - 921837 - | putative sugar ABC transporter (permease protein) TERM 1144 922375 - 922349 - G 70 -3.1 -4.87803 | overlap 922358 TATTTTTAAAGAAAA TATCACCAATC ACAGG AATTTGTGATA AACCTGGGAAATCAA SpyM3_0866 923859 - 922795 - | putative sugar ABC transporter (permease protein) TERM 1145 923691 - 923676 - G 71 -6.2 -4.2679 | CAAGCGCTATTAAAA TCAATG GCCC CATTGA ACGGAATATTTCTCC SpyM3_0867 925384 - 923852 - | putative sugar ABC transporter ATP-binding protein TERM 1146 925456 - 925476 + r 90 -11.3 -3.53012 | opp_overlap 925452 925451, overlap 925410 CTATCACAAACTTTA CTGAGATAA AAA TTATCTCAG TTTAAAAAGAGCGAC TERM 1147 925485 - 925506 + r 75 -7.2 -4.09963 | opp_overlap 925485 925487 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1148 925506 - 925485 - R 80 -7.2 -4.62336 | opp_overlap 925485, overlap 925487 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1149 925504 - 925487 - R 79 -8.4 -3.92746 | opp_overlap 925485, overlap 925485 CTCAGTTTAAAAAGA GCGACC GACAAA GGTCGC GCTTCTTGTTCTTAA SpyM3_0868 926575 - 925523 - | putative ABC transporter (lipoprotein) TERM 1150 925657 - 925669 + g 82 -4.1 -5.39721 | CATAGACAGTTGTTT TTCCT CCA GGGAA TTTTTTATCTGCTAC cdd 927058 - 926669 - | cytidine deaminase TERM 1151 927679 - 927727 + r 100 -15.7 -4.14859 | opp_overlap 927679 927684 CTCTTTACTATTTAA GCAAACCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGGCTTGC TTTATACTTCTTAAT TERM 1152 927727 - 927679 - R 100 -15.7 -3.09516 | opp_overlap 927679, overlap 927684 CTCTTTACTATTTAA GCAAACCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGGCTTGC TTTATACTTCTTAAT TERM 1153 927722 - 927684 - R 93 -10.6 -3.94002 | opp_overlap 927679, overlap 927679 TACTATTTAAGCAAA CCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGG CTTGCTTTATACTTC SpyM3_0870 928311 - 927718 - | 16S rRNA m(2)G 1207 methyltransferase TERM 1154 927812 - 927825 + g 84 -2.3 -5.81412 | overlap 927809 ATTTTTGCTTTAGCG CTAGG AGCT CCTTG TTTTTTTTGAATCAC coaA 928579 - 929499 + | pantothenate kinase TERM 1155 929785 - 929760 - g 84 -6.8 -4.97405 | overlap 929775 929776 ATTCACAAAAACAAA GCAAGCCGCG ATAAAG CACGCCTTGC TGCAAAACTTGGCTA rpsT 929568 - 929801 + | 30S ribosomal protein S20 TERM 1156 929830 - 929819 - T 72 -5.8 -4.45151 | opp_overlap 929819 AATATCCAATGAAAA CTCC AGCT GGAG TTTTTTTATACGGTA TERM 1157 929819 - 929830 + T 88 -5.8 -5.626 | opp_overlap 929819 AATATCCAATGAAAA CTCC AGCT GGAG TTTTTTTATACGGTA TERM 1158 929928 - 929885 - T 72 -4.7 -4.70659 | gap 1, opp_overlap 929877 929896, overlap 929888 929890 929896 GTTGACAGTTAAAAA TAACTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTTAGCTTA TAATTTGACTTCAAA TERM 1159 929924 - 929888 - T 71 -5.3 -4.46215 | gap 2, opp_overlap 929896, overlap 929885 929890 929896 GACAGTTAAAAATAA CTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTT-AG CTTATAATTTGACTT TERM 1160 929917 - 929896 - T 81 -8 -4.26634 | gap 1, opp_overlap 929896, overlap 929890 929888 929885 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAAT TERM 1161 929896 - 929917 + T 86 -8 -4.78752 | gap 1, opp_overlap 929896 929890 929888 929885 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAAT ciaH 931236 - 929926 - | putative sensor histidine kinase protein ciaR 931903 - 931229 - | putative DNA-binding response regulator TERM 1162 932236 - 932214 - R 89 -7 -5.31275 | opp_overlap 932209 GCTCACTACAAAAAA GAGCTGGAAA GTC CTCCCAACTC TTTTGCTTATGGTCT pepN 934787 - 932250 - | aminopeptidase N TERM 1163 933422 - 933402 - G 89 -5.5 -5.4505 | opp_overlap 933402 TTTTCCAATAAAAAA TTGTTTTTG ACT CAAAATCAA TTGATCGTTTTCAAG TERM 1164 934848 - 934829 - R 77 -9.4 -3.26546 | opp_overlap 934829 934831, overlap 934827 934819 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT TERM 1165 934829 - 934848 + r 74 -9.4 -3.0218 | opp_overlap 934829 934827 934819, overlap 934831 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT TERM 1166 934956 - 934946 - R 74 -6.8 -4.386 | opp_overlap 934948 934949 934951, overlap 934949 CAATTTCGTATAAAA CCAG GGA CTGG CAAGCTGTTTCCCAG phoU 935645 - 934992 - | putative phosphate uptake regulatory protein pstB 936474 - 935713 - | putative phosphate ABC transporter ATP-binding protein pstB2 937287 - 936484 - | phosphate ABC transporter ATP-binding protein pstC 938190 - 937303 - | putative phosphate ABC transporter (permease protein) pstC2 939115 - 938180 - | putative phosphate ABC transporter (permease protein) TERM 1167 938795 - 938785 - G 74 -4.6 -4.87665 | TTTCAGTCATAAAAA CGGC TGC GCCA ATGGCAAATGGGGTG pstS 939992 - 939126 - | putative phosphate ABC transporter, periplasmic phosphate-binding protein TERM 1168 940076 - 940088 + r 89 -6.3 -5.65927 | TAACATATCTACCTA TGCTT TGA AAGCA TTTTTTCTTTAAATA SpyM3_0882 941438 - 940131 - | putative nucleolar protein TERM 1169 941179 - 941158 - G 80 -10.1 -3.69618 | opp_overlap 941157, overlap 941156 GCCAAGTCTAAAACA CGACTCCCC TTTT GAGGAGCCG CTACTTGTGCCACCA SpyM3_0883 942232 - 941444 - | putative myo-inositol-1(or 4)-monophosphatase SpyM3_0884 942500 - 942222 - | hypothetical protein TERM 1170 942464 - 942433 - G 100 -12.4 -5.09225 | opp_overlap 942431 ACTTTATTCAAAAAA TGAAGCACTGAGGA TATT TCTTCAGTGCTCCA ACTTAAGTCAAGTGG spxA 942906 - 942502 - | transcriptional regulator Spx mreA 943881 - 942949 - | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 1171 943021 - 943035 + g 72 -4.3 -4.72846 | TCTATCAGTCAAATC TTCGA TTCCC TCGAA TTTTTCCATGTCTCG truB 944794 - 943910 - | tRNA pseudouridine synthase B TERM 1172 944748 - 944764 + g 80 -2.2 -5.54192 | opp_overlap 944739, overlap 944740 944739 944739 AAAACTGCGTCATGA GAGGTC ATGCC GGCTTC TTTTTTTAAATTAAT SpyM3_0888 946250 - 944910 - | hypothetical protein TERM 1173 946316 - 946294 - R 74 -3.4 -5.23316 | TATTATAGCAAAAAA GCTCAGGA AGTTAAG TCCCAAGC TGTCATAGATAAGAA SpyM3_0889 947303 - 946347 - | hypothetical protein TERM 1174 946937 - 946926 - G 73 -2.2 -5.24531 | AGTCCCTACAAAAAA GAGC ATAA ACTC ATTCGATAAAATAGG TERM 1175 947269 - 947252 - G 73 -5.5 -4.4959 | GGTAAGCAATTAAAA TGGCAAC AATG GTAGCCA AGGTCATTTTTAATG SpyM3_0890 947910 - 947314 - | hypothetical protein SpyM3_0891 950638 - 948002 - | hypothetical protein TERM 1176 949074 - 949054 - G 71 -3.9 -4.87133 | overlap 949055 949056 AGCCTGCAAATAAAA GGGCTACAG AGC CTGCAACGC CTACAATGGTCATCA TERM 1177 949234 - 949244 + g 73 -5.4 -4.62471 | ACTGAGCTGCATTGA GGAA TAA TTCC TTTTTGACAATTAAG TERM 1178 950614 - 950625 + g 76 -4.4 -5.02323 | opp_overlap 950614 TAGCTCTCAAAATAT CCTT CCAT AAGG TTTTCTTTATCATAC SpyM3_0892 951354 - 950653 - | ABC transporter ATP-binding protein SpyM3_0893 951472 - 952014 + | TetR/AcrR family transcriptional regulator TERM 1179 952136 - 952156 + T 81 -9.8 -3.52111 | opp_overlap 952136 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCG TERM 1180 952156 - 952136 - T 100 -9.8 -5.85737 | opp_overlap 952136 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCG SpyM3_0894 952798 - 952157 - | putative transcriptional regulator TERM 1181 952918 - 952899 - R 100 -12.2 -4.8543 | TAACCGTGACAAAAA GAGCTGGT AAAT ACCAGCTC AAACTTATCACCACC SpyM3_0895 953449 - 952961 - | hypothetical protein SpyM3_0896 953660 - 953460 - | hypothetical protein SpyM3_0897 954240 - 953701 - | hypothetical protein SpyM3_0898 954441 - 954253 - | hypothetical protein SpyM3_0899 955039 - 954452 - | hypothetical protein SpyM3_0900 955348 - 955100 - | hypothetical protein TERM 1182 955668 - 955702 + r 100 -15.3 -6.04419 | gap 1, opp_overlap 955668 AGAAATCTAAAAAAA TGAGCTTCCTACTCAC TTAT GT-AGTAGGAAGCTCA TTTTTTTCTTATTTT TERM 1183 955702 - 955668 - R 100 -15.3 -5.59564 | gap 1, opp_overlap 955668 AGAAATCTAAAAAAA TGAGCTTCCTACT-CA CTTA TGTAGTAGGAAGCTCA TTTTTTTCTTATTTT pcrA 958029 - 955711 - | DNA helicase II SpyM3_0902 958568 - 958398 - | hypothetical protein TERM 1184 958840 - 958851 + GH 79 -3.6 -5.44119 | AGCGCTCTTTTGGAT GTGG GTTG CCGC TTTTTTTGGAATGGC SpyM3_0903 958559 - 959881 + | Na(+)-linked D-alanine glycine permease TERM 1185 959923 - 959943 + FH 77 -3.2 -5.4505 | opp_overlap 959941, overlap 959909 959941 ACCTAGTCTTCTTCT GCCAAGTT CAAGA AGCTAGGC TTTTTTCTTAAGCCC SpyM3_0904 960001 - 961236 + | putative cation efflux system protein TERM 1186 961361 - 961328 - T 93 -8.3 -5.54264 | opp_overlap 961328 AAATAGTTAAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC TERM 1187 961328 - 961361 + T 86 -6.1 -5.42259 | opp_overlap 961328 AAATAGTTAAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC cfa 962379 - 961606 - | cAMP factor TERM 1188 962674 - 962662 - R 76 -2.7 -5.46657 | opp_overlap 962650 962663, overlap 962650 962647 CAGTTTAATAAAAAA CCTTA AAC TAAGA TTTTTATTAAATCGT TERM 1189 962745 - 962734 - R 93 -5.8 -5.95539 | opp_overlap 962734 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT TERM 1190 962734 - 962745 + r 77 -5.8 -4.71482 | opp_overlap 962734 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT SpyM3_0906 963585 - 962749 - | putative amino acid ABC transporter, periplasmic amino acid-binding protein TERM 1191 963153 - 963179 + g 82 -3.8 -5.40072 | overlap 963144 963155 ACACTTTATGTTTCA TATCTGATATTG TTT TGATATCAGATC TTTTTTTGACAACAA TERM 1192 963155 - 963177 + g 74 -6.4 -4.34482 | overlap 963153 ACTTTATGTTTCATA TCTGATATTG TTT TGATATCAGA TCTTTTTTTGACAAC SpyM3_0907 964230 - 963601 - | putative amino acid ABC transporter ATP-binding protein TERM 1193 964090 - 964057 - G 71 -6.7 -4.13767 | TTCGCCATTGTAAAA GACTTGACCTGAATC AATA GATTCAAGACCAGCC AACATCCGTAAGAGT TERM 1194 964175 - 964187 + g 72 -3.4 -5.00884 | opp_overlap 964175 964178 964185 ACGGTTAGATTAAAG CCAT CAAAA ATGG TTTTTTGACCAAACT SpyM3_0908 964881 - 964240 - | putative amino acid ABC transporter (permease protein) TERM 1195 964979 - 964957 - R 70 -4.1 -4.82901 | opp_overlap 964957 964958 964962, overlap 964959 964962 GTTTTTTTATAAAAA TACAACCAG ATCAG CTGGTTGCG TATTATTATTAGATT TERM 1196 964977 - 964959 - R 82 -8.9 -4.03995 | opp_overlap 964958 964957 964962, overlap 964957 964962 TTTTTTATAAAAATA CAACCAG ATCAG CTGGTTG CGTATTATTATTAGA SpyM3_0909 965323 - 964988 - | hypothetical protein TERM 1197 965478 - 965500 + r 78 -10.6 -2.66979 | opp_overlap 965478, overlap 965477 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT TERM 1198 965500 - 965478 - R 100 -12.8 -5.61881 | opp_overlap 965478 965477 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT glmS 967282 - 965519 - | D-fructose-6-phosphate amidotransferase TERM 1199 967517 - 967492 - R 100 -9.1 -5.71983 | opp_overlap 967492 CTAATTATAAAAAAA GTAGAGTAGCC TGGC AACTACTCTAC TTCTACAAATCCAAA sipC 968066 - 967509 - | putative signal peptidase I TERM 1200 968237 - 968259 + r 89 -10.7 -3.67564 | opp_overlap 968237 TTTGATATCAAAAAA GGTTAGAAG CTTGC CTTCTAACC TTTAGGTAAATAGTT TERM 1201 968259 - 968237 - R 100 -10.7 -5.21709 | opp_overlap 968237 TTTGATATCAAAAAA GGTTAGAAG CTTGC CTTCTAACC TTTAGGTAAATAGTT pyk 969786 - 968284 - | pyruvate kinase TERM 1202 969426 - 969446 + g 75 -2.5 -5.26316 | overlap 969427 969428 GAGTTGATTGAATAC CTTGTGTAG TCG CTACACGGA TTTTTTCTCCAGTGA pfkA 970862 - 969849 - | 6-phosphofructokinase dnaE 974052 - 970942 - | DNA polymerase III DnaE SpyM3_0915 974237 - 974608 + | GntR family transcriptional regulator TERM 1203 975189 - 975199 + G 73 -5.4 -4.63218 | CATTGAACCTATCCT TGAC GAA GTCA TTTTCTTGAAACAAG SpyM3_0916 974608 - 975306 + | ABC transporter ATP-binding protein SpyM3_0917 975316 - 976101 + | ABC transporter permease TERM 1204 976154 - 976115 - T 87 -12.6 -3.07005 | opp_overlap 976115 AAGTAAGCGTTAAGA CTTTCTTTTAAACTAT GACACACT ATAGTTTAAAAGAAAG TTTTTTTCAGTGTTC TERM 1205 976115 - 976154 + T 100 -13.3 -5.52909 | opp_overlap 976115 AAGTAAGCGTTAAGA CTTTCTTTTAAACTATG ACACAC TATAGTTTAAAAGAAAG TTTTTTTCAGTGTTC TERM 1206 976217 - 976178 - T 73 -7.4 -3.83205 | gap 1, opp_overlap 976186, overlap 976186 AGTGTTCATAGTAAA TTAAAAAACCGTCTTCCAT CAA ATAGAAG-CGGTTTATCAA ATTAACACCAAACCT TERM 1207 976209 - 976186 - T 87 -6.8 -5.40004 | gap 1, opp_overlap 976186, overlap 976178 TAGTAAATTAAAAAA CCGTCTTCCAT CAA ATAGAAG-CGG TTTATCAAATTAACA SpyM3_0918 976846 - 976232 - | hypothetical protein TERM 1208 976582 - 976572 - G 85 -6.8 -5.04733 | TAATTATAAATAAAA CCTG TTA CAGG GCCAAAGATTAAAAA TERM 1209 977319 - 977334 + r 91 -4.7 -5.93252 | opp_overlap 977319 CATAACTTACTAAAA CCTTG TTACAT CAAGG TTTTTTCTTTTTGCC SpyM3_0919 977625 - 977437 - | hypothetical protein ssa 978520 - 977738 - | streptococcal superantigen SSA - phage associated TERM 1210 978673 - 978643 - R 86 -4.7 -5.67283 | opp_overlap 978660 AATTGAAATAAAAAA GCAAGAGCCGC TAATGTCAG GCGATTCTTGC CAGTGTGATTATCCT SpyM3_0921 979857 - 978733 - | hypothetical protein TERM 1211 979056 - 979066 + g 70 -5.4 -4.43859 | GATTAAGCCATAAGT TCCA ATC TGGA TTTTCTCCCCTTGTA TERM 1212 979965 - 979944 - R 100 -9.4 -5.94214 | opp_overlap 979939 979944 AATATAATAAAAAAA CCGCCCTC GATTAA GAGGACGG TTTTGTCTTATCTAA TERM 1213 979944 - 979965 + r 83 -7.2 -4.76963 | opp_overlap 979944, overlap 979939 AATATAATAAAAAAA CCGCCCTC GATTAA GAGGACGG TTTTGTCTTATCTAA SpyM3_0922 981203 - 979995 - | putative cell wall hydrolase - phage associated SpyM3_0923 981546 - 981319 - | putative holin - phage associated SpyM3_0924 981818 - 981543 - | hypothetical protein TERM 1214 981579 - 981597 + g 76 -4.7 -5.02715 | CATATCTTTTAAATC TTTAACA TCATC TGTTAAA TTTTTAATTTGCTCT TERM 1215 981637 - 981666 + g 82 -8.6 -4.16943 | gap 1 ATCAACGTTTTATTT TGCTCAGCGTGCT CTTCA AGC-CGCCGAGCA TTTTGGCGTGTAACA SpyM3_0925 982445 - 981828 - | hypothetical protein SpyM3_0926 982879 - 982448 - | hypothetical protein TERM 1216 982633 - 982664 + g 77 -5.2 -4.93296 | gap 1 GTAGGTCGTTGAGCT CGTCGAGTTTAGCGG GGT CTGCTA-GCTTGATG TTTTTGTGCTCATCA SpyM3_0927 984774 - 982891 - | hypothetical protein TERM 1217 983399 - 983375 - G 74 -6.5 -4.32034 | overlap 983379 GCATTACTATTAAAA TCCATCTTAGC CGA GCTAAGATCAA TAAGCATAGCGCCAT TERM 1218 983395 - 983379 - G 71 -9.5 -2.78495 | overlap 983375 TACTATTAAAATCCA TCTTAGC CGA GCTAAGA TCAATAAGCATAGCG TERM 1219 983631 - 983644 + g 71 -5.3 -4.59511 | TGACAGTGGTATTGC CATCA AGAG TGATG TTTTTACCAGCTATT TERM 1220 984251 - 984261 + g 71 -6.8 -4.09864 | CCGATTTTATCATTG GCCA TTG TGGC TTTTAGCCCCTCGAT SpyM3_0928 984981 - 984859 - | hyaluronidase C-terminal portion - phage associated hylP.2 985803 - 985021 - | hyaluronidase N-terminal portion - phage associated TERM 1221 985131 - 985143 + g 79 -5.5 -4.84359 | CATGAGTAATTTTTA GCGTT CCT AGCGC TTTTTCTGACCCTCG SpyM3_0930 987776 - 985800 - | hypothetical protein TERM 1222 987065 - 987098 + g 100 -8.1 -5.98675 | CCTTAAGGTATTTCT GAGCCAGCTTTCGGA TTTC TTCGATCGTTGGCTC TTTTTTATTTTTGTC SpyM3_0931 988648 - 987941 - | hypothetical protein SpyM3_0932 992571 - 988648 - | hypothetical protein TERM 1223 991008 - 990992 - G 70 -5.8 -4.33956 | gap 1 CCCAAAATAGATAAA GCCGGCC CAGC GGC-GGC TGCAATAAGTCCCCA TERM 1224 991670 - 991686 + g 74 -5.1 -4.78149 | overlap 991672 GCTGCTATACGATTG GTCATTG CAA CAATGTC TTTTTCAGTTGTCGC SpyM3_0933 992751 - 992584 - | hypothetical protein SpyM3_0934 993107 - 992781 - | hypothetical protein TERM 1225 993152 - 993132 - R 100 -11.1 -5.3104 | TTATCAAAAATAAAA GGTCGCATC TAA GCTGCGACC TTAAAAATTACATAG SpyM3_0935 993771 - 993160 - | hypothetical protein TERM 1226 993433 - 993465 + g 85 -9.1 -4.14739 | overlap 993435 AATCGCCTTACCGTT TTCATCGCTTGTGCG GAA CACACAAGCGATGTC TTTTGGCGTGAGTGA TERM 1227 993435 - 993463 + g 100 -16.1 -3.67188 | overlap 993433 TCGCCTTACCGTTTT CATCGCTTGTGCG GAA CACACAAGCGATG TCTTTTGGCGTGAGT SpyM3_0936 994215 - 993790 - | hypothetical protein TERM 1228 993933 - 993947 + g 79 -8.6 -4.07687 | ATTTGTTAATTTGGT CAGCTT CTG AAGCTG TTTTGCACCAAAAAT SpyM3_0937 994589 - 994212 - | hypothetical protein SpyM3_0938 994924 - 994586 - | hypothetical protein TERM 1229 994739 - 994757 + g 76 -7.4 -4.17491 | overlap 994737 994740 CTTTGTATCCTTATT TGCTGGCA AAT TGCTAGCG TTTTGAAACTTTGAT SpyM3_0939 995223 - 994921 - | hypothetical protein TERM 1230 995013 - 994968 - G 82 -8.3 -4.1585 | overlap 994959 994973 GGATAATGTTTAAAA CACCATTTGCCAACGGATAGC GAAA ACTATCCGCAGACAAACCGCG ATGGTCGTACTCCTC TERM 1231 995008 - 994973 - G 72 -9.8 -2.93891 | overlap 994968 ATGTTTAAAACACCA TTTGCCAACGGATAGC GAAA ACTATCCGCAGACAAA CCGCGATGGTCGTAC SpyM3_0940 995354 - 995226 - | hypothetical protein SpyM3_0941 996552 - 995368 - | hypothetical protein TERM 1232 996586 - 996574 - R 91 -5.5 -5.7946 | opp_overlap 996574 CCTCCAATAAAAAAA GAGCT TAT AGCCC TTGTAAAATTTCTTC clpP.2 997243 - 996578 - | putative ClpP protease ATP-dependent protease proteolytic subunit - phage associated SpyM3_0943 998441 - 997221 - | hypothetical protein SpyM3_0944 998741 - 998475 - | hypothetical protein SpyM3_0945 998904 - 998734 - | hypothetical protein SpyM3_0946 1000655 - 998901 - | hypothetical protein TERM 1233 1000624 - 1000603 - G 93 -8.7 -5.18726 | TTTGCATAATAAAAA GCGTCATCT TTAT AGATGTCGC CAATTGCTGAATAAT SpyM3_0947 1001137 - 1000670 - | hypothetical protein SpyM3_0948 1001647 - 1001309 - | hypothetical protein SpyM3_0949 1001949 - 1001644 - | hypothetical protein TERM 1234 1001688 - 1001670 - G 90 -7.4 -5.18726 | CCTCCATAATAAAAA GCCACCAC GGT GTGATGAC TAGTGCATATTGAGT SpyM3_0950 1002673 - 1002233 - | hypothetical protein TERM 1235 1002723 - 1002741 + r 82 -4.5 -5.54907 | overlap 1002717 AAATTTAACCAAGGG GGCGTTC CGTGT GGACGTC TTTTTGTTTTGTGGA TERM 1236 1002931 - 1002911 - R 81 -9.7 -3.36273 | TTCGGTCAATACCAA CCGCACG AGTCGAA CGTGCGG GATACCGTTATTGGT SpyM3_0951 1003581 - 1002946 - | hypothetical protein SpyM3_0952 1003982 - 1003581 - | hypothetical protein SpyM3_0953 1004547 - 1004173 - | putative DNA methyltransferase - phage associated SpyM3_0954 1005056 - 1004853 - | hypothetical protein SpyM3_0955 1005360 - 1005040 - | hypothetical protein SpyM3_0956 1005770 - 1005357 - | hypothetical protein SpyM3_0957 1006904 - 1006032 - | putative DNA primase - phage associated TERM 1237 1006994 - 1006970 - R 74 -9.4 -3.11687 | gap 1 GTAACCACGACTCAA CGTCCCAACCA TCAA TGGTTGGGA-G AGGAGCGTTCGGAAT SpyM3_0958 1007506 - 1006952 - | putative DNA primase - phage associated SpyM3_0959 1008299 - 1007496 - | hypothetical protein TERM 1238 1007879 - 1007889 + g 71 -6.8 -4.03141 | opp_overlap 1007879 TATCCCACTCATACA TGCC TTT GGCA TTATTTGATGGTGGT SpyM3_0960 1008769 - 1008311 - | hypothetical protein SpyM3_0961 1010014 - 1008785 - | DEAD box family helicase SpyM3_0962 1010796 - 1010116 - | hypothetical protein SpyM3_0963 1011279 - 1010797 - | hypothetical protein TERM 1239 1011075 - 1011090 + g 74 -6.2 -4.45259 | overlap 1011070 1011082 CTTGCGCTTGTTTTT GCTTTT CGTA AAAAGC TTCTTTTTCAGCTTT SpyM3_0964 1011822 - 1011508 - | hypothetical protein TERM 1240 1011688 - 1011713 + g 95 -13.5 -3.27177 | opp_overlap 1011691, overlap 1011691 AAAATGATCTGCTAG TAATTGCGCTT GATC AAGCGCAATTA TGTGTTCATTTTCCC TERM 1241 1011710 - 1011691 - G 79 -10.8 -3.1505 | opp_overlap 1011691 1011688 ATGATCTGCTAGTAA TTGCGCTT GATC AAGCGCAA TTATGTGTTCATTTT TERM 1242 1011691 - 1011710 + g 83 -10.8 -3.75419 | opp_overlap 1011691, overlap 1011688 ATGATCTGCTAGTAA TTGCGCTT GATC AAGCGCAA TTATGTGTTCATTTT SpyM3_0965 1011972 - 1011838 - | hypothetical protein SpyM3_0966 1012265 - 1011969 - | hypothetical protein TERM 1243 1012318 - 1012335 + r 89 -7.7 -5.24989 | TAAAATTTGTTTTGA GTCCGAT TGCC GTCGGAC TTTTTTGCTATCTAA SpyM3_0967 1012528 - 1012343 - | hypothetical protein SpyM3_0968 1012695 - 1012934 + | hypothetical protein TERM 1244 1012965 - 1012990 + F 75 -4.7 -4.9792 | overlap 1012967 CGGTTTTTATCAGTT CAGGGTCTATC TTAT GATAGGCTCTC TTTTTCTCTCCGCTA TERM 1245 1012967 - 1012988 + F 75 -7.3 -4.11141 | overlap 1012965 GTTTTTATCAGTTCA GGGTCTATC TTAT GATAGGCTC TCTTTTTCTCTCCGC SpyM3_0969 1013085 - 1013294 + | hypothetical protein SpyM3_0970 1013498 - 1013253 - | hypothetical protein TERM 1246 1013386 - 1013403 + g 89 -7 -5.27399 | opp_overlap 1013386, overlap 1013397 TCTTCTGATAAGTAA CCTGCT CTTTGT AGCAGG TTTTTTGCTATCTTC SpyM3_0971 1013749 - 1013510 - | hypothetical protein TERM 1247 1013539 - 1013554 + g 70 -2.6 -5.08824 | overlap 1013526 GGTTGTTTTTAAACA TTTGTT TTAA AACGAA TTTTTTACCTAAAAA SpyM3_0972 1013823 - 1014209 + | hypothetical protein SpyM3_0973 1014404 - 1014198 - | hypothetical protein SpyM3_0975 1015340 - 1015176 - | hypothetical protein SpyM3_0974 1014461 - 1015240 + | hypothetical protein TERM 1248 1015357 - 1015370 + Tr 93 -8.1 -5.56263 | TTCCATCCCTTCCCA CTCCC TCTT GGGAG TTTTTATTTTGTAAT SpyM3_0976 1015520 - 1015374 - | hypothetical protein TERM 1249 1015590 - 1015607 + H 83 -11.3 -2.86271 | opp_overlap 1015572, overlap 1015587 1015592 ACCCCGTTAGGGGGA GAGGGCT TCTT AGCCCTC TAATTATCCTCACCA TERM 1250 1016200 - 1016186 - g 74 -5 -4.79949 | TCGTCAAAAAAATAA CCACAA CAG TTGTAG AATTAAAGGTTCCTC SpyM3_0977 1015882 - 1016670 + | putative repressor protein - phage associated TERM 1251 1017029 - 1016990 - f 85 -6.6 -5.26875 | gap 2 CGTTTAACTAAAAAA GCCCCACGCTCTCAAAGT TTGGCG ACTCT--GAGCGTGAGGC AAGACAGTATAAGAA intP 1017105 - 1018193 + | putative integrase - phage associated TERM 1252 1018288 - 1018303 + F 93 -4.7 -5.98675 | opp_overlap 1018288 CATAACTTACTAAAA CCTTG TTACAT CAAGG TTTTTTCTTTTTGTC TERM 1253 1018459 - 1018497 + F 77 -10.5 -2.54013 | gap 1, opp_overlap 1018454 1018464, overlap 1018458 1018457 1018449 AGAATCAAAATAGTA CTA-AATTCCCCATAGCG CATG CGTTATGGGGAATCATAG CTATATCTTGTTTAT TERM 1254 1018491 - 1018464 - f 95 -12.8 -3.88442 | opp_overlap 1018459 1018458 1018457 1018449, overlap 1018454 CAAAATAGTACTAAA TTCCCCATAGCG CATG CGTTATGGGGAA TCATAGCTATATCTT SpyM3_0979 1018556 - 1019176 + | hypothetical protein TERM 1255 1019204 - 1019233 + T 100 -10.9 -5.07941 | opp_overlap 1019204 ATATTTTGCTAAAAA GATTGATTTCGAT GTAC ACCGAAATCAATC TTTTTATATCATTTT TERM 1256 1019233 - 1019204 - T 100 -13.1 -4.57837 | opp_overlap 1019204 ATATTTTGCTAAAAA GATTGATTTCGAT GTAC ACCGAAATCAATC TTTTTATATCATTTT TERM 1257 1019350 - 1019380 + T 79 -8.4 -4.06502 | opp_overlap 1019350, overlap 1019353 AAGTCTGAAGAAAAA TCATAAGACAGCAG AAA CTACTGTCTTATAA TTTAGTTTAAGCATG TERM 1258 1019380 - 1019350 - T 100 -12.8 -5.08088 | opp_overlap 1019350 1019353 AAGTCTGAAGAAAAA TCATAAGACAGCAG AAA CTACTGTCTTATAA TTTAGTTTAAGCATG TERM 1259 1019353 - 1019377 + T 77 -10.1 -3.0693 | opp_overlap 1019350, overlap 1019350 TCTGAAGAAAAATCA TAAGACAGCAG AAA CTACTGTCTTA TAATTTAGTTTAAGC glgP 1021697 - 1019433 - | putative glycogen (maltodextrin) phosphorylase TERM 1260 1020758 - 1020780 + g 73 -5.6 -4.56775 | opp_overlap 1020757 1020755 1020758, overlap 1020760 CTTCTGCAAGAATAG TGTGGTTAGT GTA ACCAACCATA TTTTTCACAACAGCT malQ 1023225 - 1021732 - | putative 4-alpha-glucanotransferase TERM 1261 1023328 - 1023306 - R 82 -4.2 -5.40474 | opp_overlap 1023298 AGTTTCCTAAAAAAA GTAACATTCC TTA AAAATGCTAC TTTTTTTGTTCTTAA malR 1024359 - 1023340 - | putative maltose operon transcriptional repressor TERM 1262 1023406 - 1023396 - G 78 -4 -5.28166 | TAAAAGGAACAAAAA TAGT CTG ACTA AGATTCTGTTCATTG TERM 1263 1023930 - 1023945 + g 79 -4.8 -5.0133 | opp_overlap 1023915 1023932 TGACAAATGGTAAGT TATTTG TCAT CAAATA TTTTTTGACAGGATC TERM 1264 1025027 - 1025008 - g 79 -8.6 -4.0162 | opp_overlap 1025007 1025008 GGTGCACAGTACAAA GGGAAAAC GTAT GCTTTCCC ATTTGGTATTGAATC malE 1024603 - 1025850 + | putative maltose/maltodextrin-binding protein TERM 1265 1026002 - 1026057 + F 95 -13 -3.78775 | opp_overlap 1026022, overlap 1026001 TTTTTGTTTTACTAG TAGCTTAGTGCTACTTAAATTTTTAA CTCT TTAAAAGTTTACGTAACACTTAGCTA TTTCATCCTAACAAG TERM 1266 1027008 - 1027020 + G 79 -4.8 -5.01497 | opp_overlap 1027008 AATCGGCTTGATTAA TGGC TCACT GCCA TTTTTATCTGATCCT malF 1026124 - 1027485 + | putative maltose/maltodextrin ABC transport system (permease) TERM 1267 1027559 - 1027572 + G 71 -6.7 -3.99775 | overlap 1027550 AATCATTTGGCTTTT CCCAA TCGC TTGGG TTATTCTTACTAGCT malG 1027485 - 1028321 + | putative maltose/maltodextrin ABC transport system (permease) TERM 1268 1028338 - 1028364 + T 100 -9.5 -4.7497 | opp_overlap 1028338 TTACAACATACCAAA CCTTCTAAGGG CAAGC CCTTTAGGAGG TTTTTGATAAATAAG SpyM3_0986 1028484 - 1028323 - | hypothetical protein TERM 1269 1028463 - 1028452 - G 76 -2.2 -5.4756 | AAGTGCAACAAAAAA GACA TGTT CGTC TGATATACTAGAATT SpyM3_0987 1028508 - 1028753 + | putative transposase N-terminal portion SpyM3_0988 1028695 - 1029282 + | putative transposase carboxy terminal portion SpyM3_0989 1029430 - 1029251 - | hypothetical protein TERM 1270 1029543 - 1029486 - R 100 -13.8 -4.88918 | opp_overlap 1029491, overlap 1029491 1029530 1029535 TCAGCGTAAATAAAA CAAAAGCTCTATAATCTCTTGAATGG GTAAAT CCACTGTAGAGATTATAGAGCTTTTT GAATATCAAAAAAGT TERM 1271 1029538 - 1029491 - R 100 -13.7 -5.34857 | opp_overlap 1029491, overlap 1029486 1029530 1029535 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGG GTAAAT CCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA TERM 1272 1029491 - 1029538 + r 100 -12.2 -4.70659 | opp_overlap 1029486 1029491 1029530 1029535 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGGG TAAA TCCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA SpyM3_0990 1030780 - 1029797 - | putative esterase dltD 1032061 - 1030811 - | putative secreted protein DltD TERM 1273 1032009 - 1031995 - G 72 -3.6 -5.0925 | TGGGAAAACTAAAAA TAGTAA TCA CTACTA AAACAAAGGCAATAA dltC 1032293 - 1032054 - | D-alanine--poly(phosphoribitol) ligase subunit 2 dltB 1033567 - 1032311 - | putative dltB protein, D-alanine transfer from Dcp to undecaprenol-phosphate TERM 1274 1033443 - 1033454 + g 70 -3.6 -4.87803 | overlap 1033438 ACCAAGGTTTCATAA GTGC TTAA GCGC TTTTGTTTAAAAATC dltA 1035102 - 1033564 - | D-alanine--D-alanyl carrier protein ligase SpyM3_0995 1035257 - 1035114 - | hypothetical protein uvrB 1037512 - 1035521 - | excinuclease ABC subunit B TERM 1275 1036166 - 1036178 + g 75 -10.5 -2.92267 | overlap 1036164 1036160 GAACGTCCGTTCATC GCGCG CTA CGCGC TGGTTAATTTCTCCC TERM 1276 1036515 - 1036503 - G 87 -6.3 -5.33848 | overlap 1036505 ATCATAATTAAAAAA TCTTC TGG GAAGA AATCTAACAAGGTAT TERM 1277 1037609 - 1037595 - H 76 -4.3 -5.11937 | opp_overlap 1037595 1037597, overlap 1037597 AATAAGCGTAAAAAA CATGT CATTT ACATG TTATGTTTTATGACA TERM 1278 1037635 - 1037597 - H 71 -6.3 -4.17355 | opp_overlap 1037595 1037597, overlap 1037595 TAAGCGTAAAAAACA TGTCATTTACATGTTAT GTTTT ATGACATATAAATAACA AATTTCTTGCTTAAT TERM 1279 1038171 - 1038160 - g 88 -3 -6.02345 | opp_overlap 1038160 TAACTATAAAAAAAA GTAT GATT ATAC TGTTAAAACATTTGA glnP 1037705 - 1039879 + | putative glutamine ABC transporter, glutamine-binding protein/permease protein TERM 1280 1039905 - 1039895 - g 71 -4 -4.96646 | TGACAGAATTAAAAA TTGA TGT TCAA GATTTACACAAATCT TERM 1281 1040283 - 1040260 - g 84 -6.7 -4.84359 | opp_overlap 1040266 GCACTTCTAGAAAAA GTCGGACTT TCTGAT AAGGCCGAC GCCTTCCCAGGAAGT TERM 1282 1040266 - 1040297 + G 73 -8 -3.85698 | opp_overlap 1040260 CTAGAAAAAGTCGGA CTTTCTGATAAGGC CGAC GCCTTCCCAGGAAG TTTATCCGGCGGGCA glnQ 1039879 - 1040619 + | putative ABC transporter ATP-binding protein - glutamine transport TERM 1283 1040686 - 1040651 - T 90 -8.4 -5.055 | opp_overlap 1040657, overlap 1040654 1040657 CTAACTTCCAAAAAA TAATAAGGCAAGGAAA CCTA TCTCCTTGCCTTTTTT GGTTACTGTTATTAT TERM 1284 1040683 - 1040654 - T 100 -10.1 -4.62085 | opp_overlap 1040657, overlap 1040651 1040657 ACTTCCAAAAAATAA TAAGGCAAGGAAA CCTA TCTCCTTGCCTTT TTTGGTTACTGTTAT TERM 1285 1040680 - 1040657 - T 100 -11.8 -4.40692 | opp_overlap 1040657, overlap 1040654 1040651 TCCAAAAAATAATAA GGCAAGGAAA CCTA TCTCCTTGCC TTTTTTGGTTACTGT TERM 1286 1040657 - 1040680 + T 100 -9.6 -5.31059 | opp_overlap 1040657 1040654 1040651 TCCAAAAAATAATAA GGCAAGGAAA CCTA TCTCCTTGCC TTTTTTGGTTACTGT TERM 1287 1040713 - 1040762 + T 79 -4.6 -5.25803 | gap 1, opp_overlap 1040716 1040718, overlap 1040714 1040716 1040717 TTATTCAAACCAGCA AAATA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTATCCCCTATGC TTTTTTATGGGCGTT TERM 1288 1040714 - 1040761 + T 75 -8.1 -3.74397 | gap 1, opp_overlap 1040716 1040718, overlap 1040713 1040716 1040717 TATTCAAACCAGCAA AATA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTATCCCCTATG CTTTTTTATGGGCGT TERM 1289 1040716 - 1040759 + T 87 -10.7 -3.44801 | gap 1, opp_overlap 1040716 1040718, overlap 1040714 1040713 1040717 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTATCCCCTA TGCTTTTTTATGGGC TERM 1290 1040759 - 1040716 - T 100 -10.7 -4.39386 | gap 1, opp_overlap 1040714 1040713 1040716 1040717, overlap 1040718 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTATCCCCTA TGCTTTTTTATGGGC TERM 1291 1040717 - 1040757 + T 87 -11.4 -3.28457 | opp_overlap 1040716 1040718, overlap 1040716 1040714 1040713 TCAAACCAGCAAAAT AGGGATACTCTTATGA CTCTCTCCT TCATAAGAGTATCCCC TATGCTTTTTTATGG TERM 1292 1040756 - 1040718 - T 100 -14.9 -3.79533 | opp_overlap 1040717 1040716 1040714 1040713, overlap 1040716 CAAACCAGCAAAATA GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTATCCC CTATGCTTTTTTATG SpyM3_0999 1040919 - 1040767 - | hypothetical protein TERM 1293 1040920 - 1040933 + r 74 -2.3 -5.47159 | ATTTTTTTCTGTCAT GCAAG GTCA CTCGC TTTTTCTTTATTGGC SpyM3_1000 1042295 - 1040916 - | putative PTS system IIC component TERM 1294 1041377 - 1041391 + g 82 -11.4 -3.21593 | opp_overlap 1041376 1041373, overlap 1041374 1041388 GGTATGGTAAATTAG CAGCGC TAT GCGCTG TATTGTAAGCAGCTG SpyM3_1001 1042922 - 1042473 - | hypothetical protein SpyM3_1002 1043254 - 1042919 - | PTS system, cellobiose-specific IIA component SpyM3_1003 1043568 - 1043257 - | PTS system, cellobiose-specific IIB component SpyM3_1004 1043800 - 1043591 - | putative transcriptional antiterminator SpyM3_1005 1045584 - 1043710 - | putative transcriptional antiterminator TERM 1295 1045027 - 1045005 - GR 71 -8.6 -3.05046 | opp_overlap 1045008 1045010, overlap 1045004 1045008 1045021 TGATTTCTGCAAAAT TAATACCTTC AAG AAAGGTATTA CCTACCATGGTGGAC SpyM3_1006 1046784 - 1045690 - | outer surface protein bglA.2 1048193 - 1046793 - | putative beta-glucosidase TERM 1296 1047246 - 1047236 - G 70 -8.2 -3.7212 | opp_overlap 1047235 1047236 1047236 AAATATCTAAGATAA GGGG GTC CCCC TCTTGCTGTGACTTA SpyM3_1008 1048418 - 1049113 + | hypothetical protein TERM 1297 1049140 - 1049098 - T 91 -5 -5.84381 | opp_overlap 1049108, overlap 1049100 1049108 TTACCAAGAAAAAAA GGTCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAATT TTTCACGTTCTAAGC TERM 1298 1049138 - 1049100 - T 85 -12 -3.03774 | opp_overlap 1049108, overlap 1049098 1049108 ACCAAGAAAAAAAGG TCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAA TTTTTCACGTTCTAA TERM 1299 1049130 - 1049108 - T 100 -9.2 -5.16472 | opp_overlap 1049108, overlap 1049100 1049098 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA TERM 1300 1049108 - 1049130 + T 100 -9.2 -4.92239 | opp_overlap 1049108 1049100 1049098 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA SpyM3_1009 1049276 - 1049118 - | hypothetical protein obgE 1050652 - 1049345 - | GTPase ObgE TERM 1301 1049744 - 1049755 + g 86 -4.4 -5.4505 | ATTAAACTCGTCATA TTGG GTAG CCAA TTTTTTCTTGAAGGC TERM 1302 1050709 - 1050698 - H 79 -3.6 -5.44119 | TTTACTTTAAAAAAA CGCC TTTC AGCG TTTCCTTACATTAAT TERM 1303 1051036 - 1051079 + H 88 -6.1 -5.63504 | gap 1, opp_overlap 1051048, overlap 1051038 1051038 1051040 TCGTCTGGACTGAAC TGCC-TCCCAAAAGTTAGAC ACAAA GTCTAACGATTGGGGTGGTA TTTTTTTATGAAATT TERM 1304 1051038 - 1051077 + H 74 -6.5 -4.45201 | gap 1, opp_overlap 1051048, overlap 1051036 1051038 1051040 GTCTGGACTGAACTG CC-TCCCAAAAGTTAGAC ACAAA GTCTAACGATTGGGGTGG TATTTTTTTATGAAA TERM 1305 1051066 - 1051048 - H 76 -7.5 -4.08064 | opp_overlap 1051040 1051038 1051038 1051036 AACTGCCTCCCAAAA GTTAGAC ACAAA GTCTAAC GATTGGGGTGGTATT SpyM3_1011 1051135 - 1051602 + | putative transposase associated protein TERM 1306 1052426 - 1052382 - g 100 -15.4 -4.62054 | opp_overlap 1052379 1052388, overlap 1052383 1052388 CGAATCAAAGCAAAA CTAAAAGGATTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCAA TAATTATTTGTCCAA TERM 1307 1052425 - 1052383 - g 100 -16.7 -3.36148 | opp_overlap 1052379 1052388, overlap 1052382 1052388 GAATCAAAGCAAAAC TAAAAGGATTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCA ATAATTATTTGTCCA TERM 1308 1052388 - 1052420 + G 89 -12.2 -3.74658 | opp_overlap 1052383 1052382 1052388, overlap 1052379 AAAGCAAAACTAAAA GGATTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT TERM 1309 1052420 - 1052388 - g 100 -14.4 -4.74084 | opp_overlap 1052388 1052379, overlap 1052383 1052382 AAAGCAAAACTAAAA GGATTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT SpyM3_1012 1051623 - 1052429 + | putative transposase - IS861 nadC 1053601 - 1052729 - | nicotinate-nucleotide pyrophosphorylase TERM 1310 1052980 - 1052952 - G 70 -8.7 -3.28173 | opp_overlap 1052955, overlap 1052950 1052953 ATGATAATATCAACA CCCGCCGCCGCAG CTT CTTCGGCAGCAGC AAGGCTTTCCACTTC TERM 1311 1052979 - 1052953 - G 81 -12.2 -2.56181 | opp_overlap 1052955, overlap 1052952 1052950 TGATAATATCAACAC CCGCCGCCGCAG CTT CTTCGGCAGCAG CAAGGCTTTCCACTT SpyM3_1014 1053825 - 1055135 + | putative integral membrane protein TERM 1312 1055402 - 1055357 - g 77 -4.8 -4.93316 | gap 1, opp_overlap 1055367, overlap 1055359 1055367 CAAGAATATGAAAAA TATGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-ATG CTCAATTTGAGATAA TERM 1313 1055400 - 1055359 - g 73 -7.4 -4.06487 | gap 1, opp_overlap 1055367, overlap 1055357 1055367 AGAATATGAAAAATA TGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-A TGCTCAATTTGAGAT TERM 1314 1055367 - 1055393 + G 95 -14.5 -3.23395 | opp_overlap 1055367 1055359 1055357 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT TERM 1315 1055393 - 1055367 - g 93 -12.3 -4.02468 | opp_overlap 1055367, overlap 1055359 1055357 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT SpyM3_1015 1055213 - 1055458 + | hypothetical protein SpyM3_1016 1055538 - 1055834 + | IS1076 transposase SpyM3_1017 1055937 - 1056260 + | putative transposase - IS904A rsuA 1057008 - 1056277 - | putative 16S pseudouridylate synthase TERM 1316 1056925 - 1056937 + g 72 -3.4 -5.00884 | overlap 1056934 AACCTTTTGATTGAC GAAG ATAGC CTTC TTTTTTAAGAGAAGT SpyM3_1019 1057123 - 1057488 + | hypothetical protein TERM 1317 1057549 - 1057496 - T 84 -6.3 -5.13722 | gap 1, opp_overlap 1057511, overlap 1057511 CGGAGTAAAACAAAA GAAAAGAACCAAAAAGGTAAGCAATC CCT AAGTGCTTACCTTTTTGCTTA-TCTC AATCAATAAAATAGC TERM 1318 1057511 - 1057535 + T 88 -7.2 -4.96646 | opp_overlap 1057511 1057496 GAAAAGAACCAAAAA GGTAAGCAAT CCCTA AGTGCTTACC TTTTTGCTTATCTCA TERM 1319 1057535 - 1057511 - T 88 -7.9 -5.07971 | opp_overlap 1057511, overlap 1057496 GAAAAGAACCAAAAA GGTAAGCAATC CCT AAGTGCTTACC TTTTTGCTTATCTCA SpyM3_1020 1058828 - 1057608 - | hypothetical protein TERM 1320 1058919 - 1058904 - H 93 -7.6 -5.49809 | CAAAGGTCAAAAAAA GACTTG GAAA CAAGTC CGCAAGTCCATCAAA SpyM3_1021 1059202 - 1060686 + | hypothetical protein TERM 1321 1060719 - 1060688 - T 100 -13.2 -4.44046 | gap 1, opp_overlap 1060694 1060695 1060697 TTTACCGTAAATAAA CCATAA-CCACCCGT CTA ACGGGTGATTTATGG TATCTCTCAATAAAG TERM 1322 1060694 - 1060712 + T 82 -8.8 -4.05389 | opp_overlap 1060688, overlap 1060695 1060697 GTAAATAAACCATAA CCACCCGT CTA ACGGGTGA TTTATGGTATCTCTC TERM 1323 1060695 - 1060711 + T 87 -12.3 -3.0251 | opp_overlap 1060688, overlap 1060694 1060697 TAAATAAACCATAAC CACCCGT CTA ACGGGTG ATTTATGGTATCTCT TERM 1324 1060697 - 1060709 + T 74 -9.1 -3.05982 | opp_overlap 1060688, overlap 1060695 1060694 AATAAACCATAACCA CCCGT CTA ACGGG TGATTTATGGTATCT TERM 1325 1060726 - 1060782 + T 100 -27.9 -3.39895 | opp_overlap 1060742, overlap 1060742 GATTTATGGTATCTC TCAATAAAGGAAAAAAGTCCCAATTCT CAG AGAGTTGGGACTTTTTTCCTCTATTGA TTCATTAATCACCCG TERM 1326 1060766 - 1060742 - T 100 -11.5 -5.46129 | opp_overlap 1060726 1060742 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTCCTCTATTG TERM 1327 1060742 - 1060766 + T 100 -13.7 -5.27399 | opp_overlap 1060742, overlap 1060726 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTCCTCTATTG SpyM3_1022 1061192 - 1060791 - | hypothetical protein SpyM3_1023 1061756 - 1061277 - | putative phosphorylase TERM 1328 1061881 - 1061903 + r 76 -4.1 -5.17576 | ACAGGGTAAACCTTT GTGGCTGAA ATGAA TTCTGCTAC TTTTTTACCTTGATG SpyM3_1024 1063326 - 1062097 - | TrmA family RNA methyltransferase TERM 1329 1063520 - 1063497 - R 90 -8.2 -5.02074 | opp_overlap 1063485 1063497 1063500, overlap 1063485 CCATTGCTCAAAAAA GAAGAGCAAC TTTA GTTACTCTCC ATTATACCATATCTT psr 1064985 - 1063534 - | putative transcriptional repressor TERM 1330 1063929 - 1063942 + g 71 -3.8 -4.8622 | CTTCGATGGTTTGGT TGGG AACAAC CCCA TTTTTCATTCGCAGG aroK 1065684 - 1065193 - | shikimate kinase TERM 1331 1065336 - 1065346 + g 81 -5.4 -5.02201 | opp_overlap 1065336 ACTTAAGAAATAGAG GTCT TTG AGAC TTTTTATCATGTTTT aroA.1 1066969 - 1065677 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1332 1067049 - 1067022 - R 85 -6.4 -5.252 | CATCCTCATAAAAAA TGAAGCAAGAAA ATAG TTTCTCACTCCA CGACTTATTATCTTT SpyM3_1028 1068036 - 1067071 - | hypothetical protein TERM 1333 1067884 - 1067871 - G 71 -3.9 -4.88407 | TGAGGTAAGGAAAAA TATTG GCTG CAATA ACAATTAATGGAAAG map 1068898 - 1068038 - | methionine aminopeptidase SpyM3_1030 1070196 - 1068913 - | hypothetical protein SpyM3_1031 1070747 - 1070205 - | putative acetyl transferase TERM 1334 1070277 - 1070300 + g 76 -4.6 -5.13521 | opp_overlap 1070278, overlap 1070278 1070286 ATCACTTCCTTTAAA ACAGGTTTTT AGTT GAAAACCTGC TTTTTTAGCTACTTT TERM 1335 1070299 - 1070278 - G 73 -7.4 -4.08216 | opp_overlap 1070278 1070277 1070286 TCACTTCCTTTAAAA CAGGTTTT TAGTTG AAAACCTG CTTTTTTAGCTACTT TERM 1336 1070278 - 1070299 + g 70 -8.1 -3.66486 | opp_overlap 1070278, overlap 1070277 1070286 TCACTTCCTTTAAAA CAGGTTTTT AGTT GAAAACCTG CTTTTTTAGCTACTT TERM 1337 1070726 - 1070716 - G 79 -3.2 -5.42259 | GGAGTCTCAAAAAAA GCAA ACA CTGC AAGCTTTGTCCAAAT TERM 1338 1070933 - 1070963 + r 73 -9.3 -2.83403 | gap 1, opp_overlap 1070933 1070939, overlap 1070939 CATTTTTAAATATCA GAAA-AAGAGAATC TTTC GATTCTCTTGTTTC ATTTGCTAGAACAAA TERM 1339 1070963 - 1070933 - R 73 -9.3 -2.84801 | gap 1, opp_overlap 1070933 1070939, overlap 1070939 CATTTTTAAATATCA GAAA-AAGAGAATC TTTC GATTCTCTTGTTTC ATTTGCTAGAACAAA TERM 1340 1070939 - 1070956 + r 85 -8.5 -4.17002 | opp_overlap 1070933 1070939, overlap 1070933 TAAATATCAGAAAAA GAGAATC TTTC GATTCTC TTGTTTCATTTGCTA TERM 1341 1070956 - 1070939 - R 95 -8.5 -5.00846 | opp_overlap 1070939 1070933, overlap 1070933 TAAATATCAGAAAAA GAGAATC TTTC GATTCTC TTGTTTCATTTGCTA grab 1071974 - 1070985 - | protein G-related alpha 2M-bindingprotein TERM 1342 1072329 - 1072312 - R 100 -9.9 -5.48063 | opp_overlap 1072312 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA TERM 1343 1072312 - 1072329 + r 87 -9.9 -3.94853 | opp_overlap 1072312 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA murZ 1073590 - 1072331 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1344 1072568 - 1072598 + g 86 -9 -4.40237 | GATATCTGCTCCCAT GCGCATCAACTCTG GCA CATGGTTAATGCGC TTTTCATATATAGTG TERM 1345 1073743 - 1073715 - R 82 -3.2 -5.64873 | overlap 1073695 TTTAATAACAAAAAA GCAGAGTAAG ATTTTTTCA CTCACTCTAC TTTTTTAATAAAGTT metK 1074960 - 1073764 - | S-adenosylmethionine synthetase TERM 1346 1075138 - 1075117 - R 73 -9.5 -2.79684 | gap 1, opp_overlap 1075116, overlap 1075110 CTAGTAAGGCAACTA GCTAGTCCAC CTA GTGG-CTAGC GTCCATTAACCAGAC TERM 1347 1075405 - 1075434 + r 73 -8.7 -3.21218 | opp_overlap 1075410, overlap 1075410 1075432 TCCTATTTATTTCAA AAAAACCTCAAGG TTAT TCTTGAGGTTTTC TTGATAGTCAACAAT TERM 1348 1075429 - 1075410 - R 93 -7.9 -5.44119 | opp_overlap 1075410 1075405 TTTATTTCAAAAAAA CCTCAAG GTTATT CTTGAGG TTTTCTTGATAGTCA TERM 1349 1075410 - 1075429 + r 93 -8.6 -4.73613 | opp_overlap 1075410, overlap 1075405 TTTATTTCAAAAAAA CCTCAAGG TTAT TCTTGAGG TTTTCTTGATAGTCA inlA 1077875 - 1075497 - | putative internalin A precursor TERM 1350 1075666 - 1075679 + g 76 -4.5 -5.09204 | CTTTCTTTCGCATTA GTAGC CATA GCTGC TTTTTCTTCAGCTGT TERM 1351 1078688 - 1078699 + G 80 -4.4 -5.24129 | GATGTCATTATTGGG GTTG GTCT CAAC TTTTTTGTCACCGAC TERM 1352 1078880 - 1078856 - g 93 -8 -5.38054 | opp_overlap 1078855, overlap 1078841 GTTTACAAAGAAAAA TCACTTGTTC TTAAT AAACAAGTGA CCTTTATAGAAAATA birA 1078079 - 1079020 + | biotin--protein ligase SpyM3_1037 1079279 - 1078995 - | hypothetical protein TERM 1353 1079293 - 1079239 - G 100 -13.2 -5.55664 | gap 1, opp_overlap 1079253, overlap 1079240 1079243 1079248 1079253 GTACTATGAAAAAAA GTAACGAGATAAAACGTGGGTAAGG GCAAAA CCTTACCCACGTTTTAG-TCGTCAA TAGTATTTATTTTAT TERM 1354 1079292 - 1079240 - G 100 -16.7 -3.92314 | gap 1, opp_overlap 1079253, overlap 1079239 1079243 1079248 1079253 TACTATGAAAAAAAG TAACGAGATAAAACGTGGGTAAGG GCAAAA CCTTACCCACGTTTTAG-TCGTCA ATAGTATTTATTTTA TERM 1355 1079289 - 1079243 - G 100 -16.2 -4.06295 | gap 1, opp_overlap 1079253, overlap 1079240 1079239 1079248 1079253 TATGAAAAAAAGTAA CGAGATAAAACGTGGGTAAGG GCAAAA CCTTACCCACGTTTTAG-TCG TCAATAGTATTTATT TERM 1356 1079285 - 1079248 - G 100 -20.2 -3.04294 | opp_overlap 1079253, overlap 1079243 1079240 1079239 1079253 AAAAAAGTAACGAGA TAAAACGTGGGTAAGG GCAAAA CCTTACCCACGTTTTA GTCGTCAATAGTATT TERM 1357 1079280 - 1079253 - G 100 -15.7 -4.62002 | opp_overlap 1079253, overlap 1079248 1079243 1079240 1079239 AGTAACGAGATAAAA CGTGGGTAAGG GCAAAA CCTTACCCACG TTTTAGTCGTCAATA TERM 1358 1079253 - 1079280 + g 100 -15.7 -4.3129 | opp_overlap 1079253 1079248 1079243 1079240 1079239 AGTAACGAGATAAAA CGTGGGTAAGG GCAAAA CCTTACCCACG TTTTAGTCGTCAATA dnaX 1080953 - 1079283 - | DNA polymerase III subunits gamma and tau TERM 1359 1080849 - 1080833 - G 79 -5.1 -5.06451 | overlap 1080841 TAGGACCTGAAAAAA GATAAGC ATG GCTAATC TTGCCAGATTCAACT SpyM3_1039 1081516 - 1080953 - | hypothetical protein SpyM3_1040 1081595 - 1082404 + | hypothetical protein SpyM3_1041 1082720 - 1082457 - | hypothetical protein TERM 1360 1082788 - 1082766 - R 88 -7.1 -4.9645 | AGCACAACAATAAAA GAGCAGATT TAAAT AATCTACTC AGCCACTTCCACTAT udk 1083426 - 1082800 - | uridine kinase TERM 1361 1084129 - 1084140 + G 72 -4.4 -4.68994 | opp_overlap 1084129 AGAGCAAACCAACGA TGCT ATTC AGCA TTTTTACCTCATGGT deaD.2 1083524 - 1084609 + | ATP-dependent RNA helicase TERM 1362 1084683 - 1084648 - T 100 -13.6 -4.73388 | opp_overlap 1084651 1084654, overlap 1084651 AAGGGCTACTAAAAA CAACAATCCAATTACT TCAA AGTAATTGGATTGTTT AGTATATCAATTCTA TERM 1363 1084680 - 1084651 - T 100 -15.3 -4.47707 | opp_overlap 1084651 1084654, overlap 1084648 GGCTACTAAAAACAA CAATCCAATTACT TCAA AGTAATTGGATTG TTTAGTATATCAATT TERM 1364 1084651 - 1084680 + T 100 -15.3 -3.89614 | opp_overlap 1084648 1084651, overlap 1084654 GGCTACTAAAAACAA CAATCCAATTACT TCAA AGTAATTGGATTG TTTAGTATATCAATT TERM 1365 1084654 - 1084677 + T 93 -11.2 -4.06993 | opp_overlap 1084651 1084648, overlap 1084651 TACTAAAAACAACAA TCCAATTACT TCAA AGTAATTGGA TTGTTTAGTATATCA SpyM3_1044 1085993 - 1084719 - | putative peptidoglycan GlcNAc deacetylase TERM 1366 1086078 - 1086043 - R 100 -14.4 -5.69023 | opp_overlap 1086043 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAA CCTAACTTTTTGTTTA TTTTTTTTATTACTG TERM 1367 1086043 - 1086078 + r 100 -12.2 -6.13503 | opp_overlap 1086043 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAA CCTAACTTTTTGTTTA TTTTTTTTATTACTG gapN 1087491 - 1086088 - | putative NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 1368 1086531 - 1086521 - G 73 -5.4 -4.64334 | opp_overlap 1086521 AACCCTTCAACAAAA TCAG CAG CTGA TGTATCAATTAATGG TERM 1369 1087690 - 1087671 - R 95 -8.6 -5.1675 | opp_overlap 1087671 TTAGCTAGCAAAAAA GAGCTGGT TTAA ACCAACTC TTTAACCCGTTAATC ptsI 1089424 - 1087700 - | putative phosphoenolpyruvate:sugar phosphotransferase system enzyme I TERM 1370 1088178 - 1088191 + g 72 -3.1 -5.1356 | ACCGCAACGCCTTCT GCAAG CAAG TTTGC TTTTTCTTCGTCAAA TERM 1371 1088662 - 1088677 + g 76 -3.2 -5.28942 | TGTGCGCATCTTTAA GGAGAG ACCA CTCTGC TTTTTGTTTGGCATA ptsH 1089701 - 1089438 - | phosphocarrier protein HPr TERM 1372 1089823 - 1089834 + H 71 -3 -5.10163 | AACGACAAAAAATGT GAAA TTAT TTTC TTTTATTTTCACGTT nrdH 1090061 - 1090312 + | putative glutaredoxin-like protein TERM 1373 1090431 - 1090441 + G 81 -5.4 -5.08824 | opp_overlap 1090428 1090431 CATAAAGACAAAGAA GCTT TAA AAGC TTTTTTCGCTGAAAA nrdE.1 1090332 - 1092491 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1374 1092900 - 1092880 - gf 72 -8.4 -3.36505 | AGACGTCATTGACAA GTCAACTT GGGAA AAGTTGAC CGAACAATTTTGGCT TERM 1375 1093284 - 1093274 - gf 75 -5.4 -4.77173 | GCCTTACAAAAGAAA GTTG CCT CAAC ATATCTCGAAACTTT nrdF 1092824 - 1093783 + | ribonucleotide-diphosphate reductase subunit beta TERM 1376 1093794 - 1093816 + G 100 -13.6 -4.77719 | opp_overlap 1093798 TCTAATAGTGCTCAC GAGACTGATA ATC TATCAGTCTC TTTTCTTAACTTTTG SpyM3_1051 1093758 - 1095071 + | putative chloride channel protein TERM 1377 1095398 - 1095353 - g 77 -4.8 -4.93316 | gap 1, opp_overlap 1095363, overlap 1095355 1095363 CAAGAATATGAAAAA TATGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-ATG CTCAATTTGAGACAA TERM 1378 1095396 - 1095355 - g 73 -7.4 -4.06487 | gap 1, opp_overlap 1095363, overlap 1095353 1095363 AGAATATGAAAAATA TGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-A TGCTCAATTTGAGAC TERM 1379 1095389 - 1095363 - g 93 -12.3 -4.02468 | opp_overlap 1095363, overlap 1095355 1095353 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT TERM 1380 1095363 - 1095389 + G 95 -14.5 -3.23395 | opp_overlap 1095363 1095355 1095353 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT SpyM3_1052 1095209 - 1095502 + | putative transposase TERM 1381 1095518 - 1095506 - f 85 -6.3 -5.29846 | AACCGGAAATAAAAA TTCAG TTT CTGAA GGAAAATAGTGTTAG SpyM3_1053 1095535 - 1095831 + | putative transposase SpyM3_1054 1095934 - 1096359 + | putative transposase SpyM3_1055 1097151 - 1096456 - | hypothetical protein SpyM3_1056 1097931 - 1097170 - | hypothetical protein TERM 1382 1097439 - 1097426 - G 73 -6.7 -4.2018 | overlap 1097430 1097432 AAATTTGGAAAATAA GGAAC ATCG GTTCC CCGAATGGCATTGTA SpyM3_1057 1098143 - 1097928 - | putative transcriptional regulator protein TERM 1383 1098498 - 1098463 - R 80 -9.3 -3.61654 | opp_overlap 1098462 1098465 1098471, overlap 1098465 1098471 GATAGTCATTTCAAA TATAAAAACCAAGTT CTAAAT AACTTGGTTTTTATG GATTTACACTATTTC TERM 1384 1098496 - 1098465 - R 90 -11.9 -3.38522 | opp_overlap 1098465 1098462 1098471, overlap 1098463 1098471 TAGTCATTTCAAATA TAAAAACCAAGTT CTAAAT AACTTGGTTTTTA TGGATTTACACTATT TERM 1385 1098465 - 1098496 + r 84 -11.9 -2.66098 | opp_overlap 1098463 1098465 1098471, overlap 1098462 1098471 TAGTCATTTCAAATA TAAAAACCAAGTT CTAAAT AACTTGGTTTTTA TGGATTTACACTATT TERM 1386 1098471 - 1098490 + r 83 -6.5 -4.94992 | opp_overlap 1098471 1098465 1098463, overlap 1098465 1098462 TTTCAAATATAAAAA CCAAGTT CTAAAT AACTTGG TTTTTATGGATTTAC TERM 1387 1098490 - 1098471 - R 84 -6.5 -5.19879 | opp_overlap 1098465 1098462 1098471, overlap 1098465 1098463 TTTCAAATATAAAAA CCAAGTT CTAAAT AACTTGG TTTTTATGGATTTAC alaS 1100979 - 1098502 - | alanyl-tRNA synthetase TERM 1388 1098851 - 1098831 - G 70 -9.7 -2.54801 | opp_overlap 1098831 1098834 1098842, overlap 1098830 1098828 1098833 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGCT TERM 1389 1098831 - 1098851 + g 79 -9.7 -3.76281 | opp_overlap 1098830 1098828 1098831 1098833, overlap 1098834 1098842 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGCT TERM 1390 1098834 - 1098848 + g 72 -10 -2.65994 | opp_overlap 1098833 1098831 1098830 1098828, overlap 1098831 1098842 CTTTAAAGACATCAC CAGCTG CTG CAGCTG CTGCTTTTTCTTTAA TERM 1391 1098842 - 1098852 + g 89 -6.8 -5.28942 | opp_overlap 1098833 1098831 1098830 1098828, overlap 1098834 1098831 ACATCACCAGCTGCT GCAG CTG CTGC TTTTTCTTTAAGCTC prsA 1102562 - 1101507 - | foldase protein PrsA SpyM3_1060 1103257 - 1102625 - | O-methyltransferase TERM 1392 1103371 - 1103354 - R 93 -7 -5.75478 | opp_overlap 1103349 1103354 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT TERM 1393 1103354 - 1103371 + r 75 -7 -4.24432 | opp_overlap 1103354, overlap 1103349 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT SpyM3_1061 1104594 - 1103398 - | putative oxalate:formate antiporter TERM 1394 1104938 - 1104884 - R 100 -21.9 -5.40873 | opp_overlap 1104897, overlap 1104885 AATATAAAAAGAAAA TGACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATCC TAAACTCTTTTTGTC TERM 1395 1104937 - 1104885 - R 100 -25.4 -3.80863 | opp_overlap 1104897, overlap 1104884 ATATAAAAAGAAAAT GACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATC CTAAACTCTTTTTGT TERM 1396 1104897 - 1104925 + r 100 -14.8 -4.07124 | opp_overlap 1104885 1104884 AATGACCGATAGAAA TGGAGATTCACA CCAAC TGTGAATCTCCA TTTCTATCAATCCTA pepB 1106775 - 1104970 - | putative oligopeptidase coiA 1107750 - 1106788 - | putative competence protein SpyM3_1064 1108712 - 1108047 - | putative 16S pseudouridylate synthetase TERM 1397 1108191 - 1108205 + g 81 -7.2 -4.49389 | overlap 1108177 GGTCAAAAACATTTT TTTCAC TTG GTGAAA TTTTCCTTCTGAAAT nagB 1109586 - 1108882 - | putative N-acetylglucosamine-6-phosphate isomerase queA 1109788 - 1110816 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase SpyM3_1067 1110823 - 1112043 + | hypothetical protein TERM 1398 1112078 - 1112053 - T 100 -13.4 -4.67904 | opp_overlap 1112053 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGTCAAGC TTTTTTAATGAGCAA TERM 1399 1112053 - 1112078 + T 100 -13.4 -5.14563 | opp_overlap 1112053 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGTCAAGC TTTTTTAATGAGCAA SpyM3_1068 1112747 - 1112157 - | hypothetical protein SpyM3_1069 1112992 - 1112744 - | hypothetical protein SpyM3_1070 1113204 - 1112977 - | hypothetical protein TERM 1400 1113174 - 1113185 + g 74 -4.4 -4.90002 | TTCCTAAAATAATCC CTAC AATG GTAG TTTTCTTCTCTCTTA TERM 1401 1113359 - 1113339 - R 100 -9.8 -5.13521 | AAAGCACTTAAAAAA CCAATCTC TTTTT GAGATTGG AAACCCTTTTCTTAT sodM 1113976 - 1113371 - | superoxide dismutase holA 1115113 - 1114073 - | DNA polymerase III subunit delta TERM 1402 1114884 - 1114869 - G 76 -7.6 -4.23213 | opp_overlap 1114868, overlap 1114882 GTGATATCTAACAAA TGGTCA AAAA TGACCA CCTTCTGCTCAGCAA comEC 1117427 - 1115184 - | putative competence protein TERM 1403 1115612 - 1115594 - G 76 -11 -2.5294 | overlap 1115593 1115591 CACTTCCCATAATAG GCAACTGG TCT CCAGCTGC TAAAACCCTAACGTG TERM 1404 1115822 - 1115858 + g 73 -7.2 -4.07568 | GAATTAAGGTTTTCT GAGCATTAGCTACGTG ATGTC CTCGTCGCCAGTGCTC TTTTGAAGAAAAGAA TERM 1405 1116072 - 1116062 - G 89 -5.4 -5.39755 | overlap 1116069 GATAATCATAAAAAA TAGC GAA GCTA ATCACCAAGATAAGC TERM 1406 1116467 - 1116457 - G 73 -6.8 -4.26202 | ACAGTCATTAAGAAA TGGG CAT CCCA TAAAAAGACAAGTAA comEA 1118070 - 1117408 - | putative competence protein SpyM3_1075 1119010 - 1118270 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 1407 1119477 - 1119448 - g 70 -2.9 -5.1101 | gap 1, opp_overlap 1119449, overlap 1119449 TGATGATTTAAAAAA CCTCCTAAACCATG TGC CACG-TTCAGGAGT TGATTTGATGCTCTG SpyM3_1076 1119050 - 1119904 + | hypothetical protein SpyM3_1077 1119894 - 1120172 + | hypothetical protein TERM 1408 1120190 - 1120166 - T 93 -8 -5.70761 | opp_overlap 1120166 1120155 AAAAGAAAAGAAAAA TCATTGAGAC TTATC ATCTCAATGA TTTTTTTATGCTTCA TERM 1409 1120166 - 1120190 + T 93 -7.3 -5.71983 | opp_overlap 1120166, overlap 1120155 AAAAGAAAAGAAAAA TCATTGAGA CTTATCA TCTCAATGA TTTTTTTATGCTTCA kup 1122196 - 1120196 - | putative cation/potassium uptake protein TERM 1410 1122320 - 1122287 - R 93 -9.1 -4.37658 | opp_overlap 1122294, overlap 1122294 AACTTTTTCAGAAAA TTAAAAAGAGCTGAC TCTC ATCAACTCTCTTTAA GCTTATTCACCTTTG TERM 1411 1122313 - 1122294 - R 77 -5 -5.1417 | opp_overlap 1122294, overlap 1122287 TCAGAAAATTAAAAA GAGCTGAC TCTC ATCAACTC TCTTTAAGCTTATTC deaD.1 1123942 - 1122323 - | putative ATP-dependent RNA helicase prfC 1125793 - 1124249 - | peptide chain release factor 3 SpyM3_1081 1125750 - 1125971 + | hypothetical protein TERM 1412 1126004 - 1125977 - TR 76 -2.6 -5.40072 | opp_overlap 1125979, overlap 1125978 1125979 1125981 TCTTTTTTAAAAAAA TCGAGCCTGGAA ATCA TCCCAGACTCTT CTTATTATAGCTGAT TERM 1413 1126002 - 1125979 - TR 76 -9.6 -2.89655 | opp_overlap 1125979, overlap 1125978 1125977 1125981 TTTTTTAAAAAAATC GAGCCTGGAA ATCA TCCCAGACTC TTCTTATTATAGCTG SpyM3_1082 1126736 - 1126041 - | hypothetical protein murF 1128207 - 1126840 - | putative D-Ala-D-Ala adding enzyme TERM 1414 1127175 - 1127195 + g 79 -9.1 -3.89346 | overlap 1127176 TTTTTCCACCGGGGT TCTTTGCTA TGT TAGCAAAGG TTTCTAAAATCAGGC TERM 1415 1127176 - 1127194 + g 75 -10.4 -2.93393 | overlap 1127175 TTTTCCACCGGGGTT CTTTGCTA TGT TAGCAAAG GTTTCTAAAATCAGG TERM 1416 1127839 - 1127858 + g 75 -9.4 -3.29704 | overlap 1127836 AGTTTTGTAAGTGGT TGATAGGA CAGC TCCTATCA TATCTTTGGTGGAAG ddl 1129371 - 1128406 - | D-alanyl-alanine synthetase A TERM 1417 1128601 - 1128589 - G 72 -3.3 -5.06414 | overlap 1128596 TTGGGTCAAGAAAAA GTCAC AAC GGGAC AACCCGCAACCACCT recR 1130149 - 1129553 - | recombination protein RecR SpyM3_1086 1130387 - 1130196 - | hypothetical protein fdhC 1131727 - 1130948 - | putative formate dehydrogenase TERM 1418 1131791 - 1131822 + r 72 -8.1 -3.47841 | gap 1, opp_overlap 1131791 1131793 1131796, overlap 1131793 AATTTTCCTAAAAAA TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA TTATCATATAACTAT TERM 1419 1131822 - 1131791 - R 100 -10.3 -5.01732 | gap 1, opp_overlap 1131791 1131793, overlap 1131793 1131796 AATTTTCCTAAAAAA TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA TTATCATATAACTAT TERM 1420 1131819 - 1131793 - R 87 -13.1 -2.75708 | opp_overlap 1131791 1131793, overlap 1131791 1131796 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1421 1131793 - 1131819 + r 81 -10.9 -2.88069 | opp_overlap 1131793 1131791 1131796, overlap 1131791 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1422 1131816 - 1131796 - R 89 -11.2 -3.52177 | opp_overlap 1131793 1131791, overlap 1131793 1131791 TCCTAAAAAATGCAA GCCCTTTC AACAA GAAAGGGC TCGTCATTATCATAT SpyM3_1088 1132393 - 1131851 - | hypothetical protein TERM 1423 1132347 - 1132336 - G 70 -5.8 -4.42238 | TTATCGGAATCAAAA TCGC AAAT GCGA CCAAAATAGAGGTAT SpyM3_1089 1133075 - 1132554 - | putative transcriptional regulator TERM 1424 1133181 - 1133150 - R 89 -11 -3.61902 | opp_overlap 1133158, overlap 1133158 TCTTAGGATATAGAA CCAAAAAACCAGAC CAAA GTCTGGTTTTTAAG TTATTCACCACCAAG TERM 1425 1133158 - 1133173 + r 93 -9 -4.8143 | opp_overlap 1133150 1133158 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1426 1133173 - 1133158 - R 95 -9 -5.35354 | opp_overlap 1133158, overlap 1133150 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1427 1133206 - 1133220 + r 70 -3.6 -4.84274 | overlap 1133207 ACCAAGGTAGTATTC TTTAAC AAT GTTAAG TTTTTCATCTAATTC gpmA 1133877 - 1133182 - | phosphoglyceromutase TERM 1428 1134482 - 1134500 + G 71 -6 -4.15044 | GCTTCAGATTATGAG GGTCTAGT GGA ACTAAACC TTTCTTGCCCGAACG pyrD 1134116 - 1135051 + | dihydroorotate dehydrogenase 1A TERM 1429 1135069 - 1135102 + T 100 -12.7 -4.62069 | gap 1, opp_overlap 1135069 TTAATAGTCAAAAAA GCTTGGAAA-TGTGCA CTT TGTACACTTTCCAAGC TTTTTAAAATGGGAA TERM 1430 1135102 - 1135069 - T 100 -14.1 -5.1615 | gap 1, opp_overlap 1135069 TTAATAGTCAAAAAA GCTTGGAAATGTGCAC TTT GTACAC-TTTCCAAGC TTTTTAAAATGGGAA SpyM3_1092 1135279 - 1135106 - | hypothetical protein cadA 1137213 - 1135351 - | putative heavy metal/cadmium-transporting ATPase TERM 1431 1137544 - 1137503 - R 100 -11.1 -5.88197 | opp_overlap 1137506 1137507, overlap 1137506 1137507 CCAAATATAAAAAAA GAACCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGATTT TTCTAGACGAATTAT TERM 1432 1137506 - 1137541 + r 77 -6.2 -4.83169 | opp_overlap 1137506 1137503 1137507, overlap 1137507 AATATAAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1433 1137541 - 1137506 - R 100 -12.8 -4.94703 | opp_overlap 1137506 1137507, overlap 1137503 1137507 AATATAAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1434 1137540 - 1137507 - R 100 -14.1 -3.53161 | opp_overlap 1137506 1137507, overlap 1137506 1137503 ATATAAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA TERM 1435 1137507 - 1137540 + r 81 -9.7 -3.49419 | opp_overlap 1137507 1137506 1137503, overlap 1137506 ATATAAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA SpyM3_1094 1137925 - 1137743 - | hypothetical protein TERM 1436 1137984 - 1137958 - R 84 -6.7 -5.03314 | opp_overlap 1137958 1137951 TCTATTCGTAAAAAA GCCAAATCT AGTGAGAAA AGATTTGGC ATGTTTATTATTGAT mf4 1138786 - 1137992 - | putative mitogenic factor - phage associated TERM 1437 1139003 - 1138980 - R 93 -5.8 -5.8187 | opp_overlap 1138981 1138982 1138989, overlap 1138982 CATCTAATAAAAAAA CAGCCCCCGC AAAA GCGAGGGCAT TTGTCTTATCTTAAG TERM 1438 1138981 - 1139002 + r 78 -7.1 -4.34444 | opp_overlap 1138980 1138982, overlap 1138982 1138989 ATCTAATAAAAAAAC AGCCCCCGC AAAA GCGAGGGCA TTTGTCTTATCTTAA TERM 1439 1139001 - 1138982 - R 100 -12.8 -4.54306 | opp_overlap 1138981 1138982 1138989, overlap 1138980 TCTAATAAAAAAACA GCCCCCGC AAAA GCGAGGGC ATTTGTCTTATCTTA TERM 1440 1138982 - 1139001 + r 83 -10.6 -3.19582 | opp_overlap 1138982 1138980, overlap 1138981 1138989 TCTAATAAAAAAACA GCCCCCGC AAAA GCGAGGGC ATTTGTCTTATCTTA SpyM3_1096 1140245 - 1139031 - | putative N-acetylmuramoyl-L-alanine amidase, lysin - phage associated TERM 1441 1139119 - 1139134 + g 70 -9 -3.14961 | overlap 1139117 1139115 ATCTTGTCAGACTGC CCGACA CTGA TGTCGG TCTGTTGATCATACT SpyM3_1097 1140812 - 1140357 - | putative holin protein - phage associated SpyM3_1098 1141437 - 1140823 - | hypothetical protein TERM 1442 1141144 - 1141166 + g 71 -6.3 -4.14472 | gap 1, overlap 1141155 TGCGGACACCTTAGC CAGTCC-AGC GGCT GCTTGGGCTG TTTTAGCAGTCTTAG SpyM3_1099 1141871 - 1141440 - | hypothetical protein TERM 1443 1141634 - 1141648 + g 88 -8.6 -4.75776 | TAAGCTCAGCTAACT TTGAGG TGT CCTCAA TTTTTGGATTACCTT SpyM3_1100 1143661 - 1141880 - | hypothetical protein TERM 1444 1143457 - 1143421 - G 76 -10.9 -2.74144 | opp_overlap 1143421 1143424, overlap 1143420 CTTTTAGCTGTAAAT CAAGCTCTTTGACCTGC TGA GCTAGTCCAAAAGCTTG TTGAGTGGTAACTTT hylP.3 1144785 - 1143676 - | hyaluronoglucosaminidase - phage associated TERM 1445 1144017 - 1144029 + g 73 -5.5 -4.57837 | CGTGAGTAATTTTTA GCGTT CCT AGCGC TTTTTCGACGCCTCT pblB 1146758 - 1144785 - | putative platelet-binding protein - phage associated TERM 1446 1146191 - 1146207 + g 83 -5.1 -5.20333 | TTATAGTATCTGTCT CCTCATA AGA TTTGAGG TTTTTCTTATACATA SpyM3_1103 1147435 - 1146740 - | hypothetical protein TERM 1447 1147364 - 1147341 - G 76 -6.8 -4.37886 | gap 1, overlap 1147324 1147344 TCATTTTCGACAAAA TG-AGGGGATA AAA CATCCCCTACA TCATAACCAGTTAGG pblA 1149795 - 1147432 - | putative human platelet-binding protein - phage associated TERM 1448 1147792 - 1147808 + g 71 -9.5 -2.85999 | opp_overlap 1147806 1147807 GATTACTTTACCTGC GGGTTTT AGC AAAACCC TATCGTATGAGATAG SpyM3_1105 1150166 - 1149795 - | hypothetical protein TERM 1449 1150073 - 1150097 + g 75 -10 -2.97456 | opp_overlap 1150073, overlap 1150075 AACCGACAGCAAAAA CAGCCACCTG ATAAG CAGGTAGCTG TCTGTAATCATATAT TERM 1450 1150097 - 1150073 - G 100 -12.2 -4.82154 | opp_overlap 1150073 1150075 AACCGACAGCAAAAA CAGCCACCTG ATAAG CAGGTAGCTG TCTGTAATCATATAT TERM 1451 1150196 - 1150212 + r 80 -6.7 -4.65182 | opp_overlap 1150195 CTAGTTTTTTAAATC TTTTTGA CTT TCAAAAA TTTCTTTGATTTCTA SpyM3_1106 1150444 - 1150181 - | hypothetical protein SpyM3_1107 1151045 - 1150455 - | putative structural protein - phage associated SpyM3_1108 1151396 - 1151061 - | hypothetical protein TERM 1452 1151304 - 1151324 + g 82 -6.2 -4.87626 | AGTCTTTTCTAAGAT GATGAATC GTGCA GGTTCATC TTTTTGATGTTCAAA TERM 1453 1151366 - 1151344 - G 89 -5.6 -5.42259 | gap 1, opp_overlap 1151348 TGATGTTCAAAAAAA GACG-GCAC ATCTAA GTGCTCGTC TAAATATTTTTTGAT TERM 1454 1151412 - 1151424 + r 84 -6.3 -5.20154 | TCATCGCACCGCCTT CAACA ATG TGTTG TTTTTTGAATTATCT SpyM3_1109 1151666 - 1151397 - | hypothetical protein SpyM3_1110 1151964 - 1151626 - | hypothetical protein SpyM3_1111 1152346 - 1151924 - | hypothetical protein SpyM3_1112 1152556 - 1152356 - | hypothetical protein SpyM3_1113 1153467 - 1152556 - | putative structural protein - phage associated TERM 1455 1152697 - 1152707 + g 75 -5.4 -4.68908 | ACCGTATTTAATGAT TTCC ATT GGAA TTTGTTTTGCATAAC SpyM3_1114 1153953 - 1153492 - | hypothetical protein TERM 1456 1154026 - 1154013 - R 82 -4.5 -5.55664 | opp_overlap 1153988 1154013 TTAGCAGTAAAAAAA CACCC TTTC GGATG TCGTTTTTTAACAGC SpyM3_1115 1155449 - 1154034 - | putative terminase - phage associated TERM 1457 1155524 - 1155509 - R 79 -5.4 -5.19328 | opp_overlap 1155509 1155521 AGGGCACAATAAAAA GCCGTA TTGC TACGAC TTTGGTTTAAGTTGA SpyM3_1116 1155800 - 1155531 - | hypothetical protein SpyM3_1117 1156014 - 1155748 - | hypothetical protein SpyM3_1118 1156159 - 1156007 - | hypothetical protein TERM 1458 1156235 - 1156215 - R 77 -6.2 -4.77165 | gap 1, opp_overlap 1156215 TTGGGCATAAGAAAA GCACC-AGA TTGC TCTAGGTGC TTAATATATTGCGTT SpyM3_1119 1156469 - 1156236 - | hypothetical protein SpyM3_1120 1157959 - 1156466 - | hypothetical protein SpyM3_1121 1159220 - 1157952 - | putative structural protein - phage associated TERM 1459 1159203 - 1159178 - G 87 -8.3 -4.59773 | CTCCAGTTTTAAAAA GAGCTAACTTC CTAC GAAGATAGCCC ATACCCATATAATTC SpyM3_1122 1159573 - 1159217 - | hypothetical protein SpyM3_1123 1160065 - 1159721 - | hypothetical protein SpyM3_1124 1160592 - 1160173 - | hypothetical protein TERM 1460 1160642 - 1160658 + r 100 -8.7 -5.99154 | opp_overlap 1160641 AATTATTAACCAATG GTCAGCT GTG AGCTGGC TTTTTTTGTTTAGTA TERM 1461 1160672 - 1160684 + r 72 -4.9 -4.6526 | GCTTTTTTTGTTTAG TATTG GTT CAATA TTTTTACGACTTTAT SpyM3_1125 1160919 - 1160668 - | hypothetical protein TERM 1462 1160760 - 1160779 + g 71 -6.5 -4.27965 | ACAACTTAGGGATTT TGAAACG AATTAG CGTTTCA TTTGGTTTTACTTGT SpyM3_1126 1161071 - 1160916 - | hypothetical protein SpyM3_1127 1161385 - 1161068 - | hypothetical protein SpyM3_1128 1161933 - 1161421 - | hypothetical protein TERM 1463 1161815 - 1161825 + g 85 -4 -5.56372 | ATTGATTTGGCACGC TCAT AGA ATGA TTTTTGTTTTGGTTT SpyM3_1129 1162262 - 1161930 - | hypothetical protein SpyM3_1130 1163619 - 1162273 - | hypothetical protein TERM 1464 1162415 - 1162425 + g 70 -5.4 -4.38712 | GTGTAAAATGGTTTG TCTG AAT CAGA TTTTCTCCGGATAAA TERM 1465 1162830 - 1162850 + g 72 -3.3 -5.08824 | overlap 1162832 1162833 CTTTTGGAATTTTAT TGATGTCTT GAT AAGACAATA TTTTTTCAATACCAG TERM 1466 1162955 - 1162965 + g 85 -5.4 -5.1861 | AAGAATTGCTTGTTC TGGT GTA ACCA TTTTTTGGTAATCAC SpyM3_1131 1164011 - 1163616 - | hypothetical protein SpyM3_1132 1165173 - 1164376 - | hypothetical protein TERM 1467 1164437 - 1164456 + g 74 -4.2 -5.06451 | TCGCAATGACCGCAA GGCTTAGG TTTT TCTATGCC TTTTTTAACGTCATC TERM 1468 1164953 - 1164972 + g 73 -2.2 -5.21709 | gap 1, overlap 1164937 TCAGAGCCGTTTTGG GCTT-TGAA TTC TTCATGAGC TTTTTTACTCTCAAA SpyM3_1133 1165366 - 1165166 - | hypothetical protein recT 1166289 - 1165363 - | putative recombinase - phage associated SpyM3_1135 1166444 - 1166292 - | hypothetical protein SpyM3_1136 1166622 - 1166449 - | hypothetical protein SpyM3_1137 1166884 - 1166678 - | hypothetical protein SpyM3_1138 1167263 - 1167030 - | hypothetical protein SpyM3_1139 1167630 - 1167244 - | hypothetical protein SpyM3_1140 1168319 - 1168134 - | hypothetical protein xis 1168632 - 1168321 - | putative excisionase - phage associated TERM 1469 1168684 - 1168701 + r 89 -7.7 -5.25699 | TATTTTTTGTTTGGA GTCCGAT TCCC GTCGGAC TTTTTATTATCTAAT TERM 1470 1168765 - 1168789 + r 100 -11.5 -4.72863 | opp_overlap 1168768 TGTTTACATTGAATC GAAGTCTATCC TTT GGATGGGCTTC TTTTAGTTTCTTTAC TERM 1471 1168874 - 1168900 + r 87 -10.4 -3.82067 | opp_overlap 1168881, overlap 1168876 CATGTGTGTCCTTTC TACTATATGATT TAA AATCATATAGTG TTTAAAATTTTTGTG TERM 1472 1168876 - 1168898 + r 87 -10.8 -3.47713 | opp_overlap 1168881, overlap 1168874 TGTGTGTCCTTTCTA CTATATGATT TAA AATCATATAG TGTTTAAAATTTTTG SpyM3_1142 1169114 - 1168902 - | putative Cro-like repressor protein - phage associated TERM 1473 1169686 - 1169673 - g 73 -2.4 -5.26918 | ATATTCGATAAAAAA TCTG AGGAGA CAGA AGATTATATCACTGA SpyM3_1143 1169316 - 1170071 + | putative cI-like repressor - phage associated SpyM3_1144 1170083 - 1170601 + | hypothetical protein TERM 1474 1170644 - 1170609 - f 84 -5.4 -5.5604 | TCAACTAACAAAAAA GCCCCACGCTCA AATTTGGCGAGG AGAGCGTGAGGC GAATCTAGTATAGTA SpyM3_1145 1170725 - 1171867 + | putative integrase - phage associated TERM 1475 1171901 - 1171946 + T 76 -9.8 -2.93769 | opp_overlap 1171906, overlap 1171906 ACCCCCCTGAACACA AAAAAGCCCACTGCACAGGC TACAAC GCTTGTACAATGGGCTTTTA TATATGCAATTATTT TERM 1476 1171941 - 1171906 - T 100 -11.9 -5.47159 | opp_overlap 1171901 1171906 CCTGAACACAAAAAA GCCCACTGCACAGGC TACAAC GCTTGTACAATGGGC TTTTATATATGCAAT TERM 1477 1171906 - 1171941 + T 100 -9.7 -4.61199 | opp_overlap 1171906, overlap 1171901 CCTGAACACAAAAAA GCCCACTGCACAGGC TACAAC GCTTGTACAATGGGC TTTTATATATGCAAT SpyM3_1146 1172231 - 1171956 - | putative histone-like DNA-binding protein SpyM3_1147 1172917 - 1172330 - | hypothetical protein TERM 1478 1172660 - 1172682 + g 80 -2 -5.59357 | opp_overlap 1172660 CAAAATAGAAGAAGA TGTCGCATAA AAT TTATAAGACA TTTTTTTAGTCTGAT SpyM3_1148 1173737 - 1172895 - | hypothetical protein SpyM3_1149 1174569 - 1173730 - | hypothetical protein TERM 1479 1173935 - 1173947 + g 74 -4.9 -4.67982 | overlap 1173942 AGGTAACTATCTAAC CATTT CGT AAATG TTTTATTACCTCGAC TERM 1480 1174769 - 1174728 - R 74 -5.9 -4.64591 | gap 1, opp_overlap 1174728 TAACGAGATACAAAA CGAGGCAAAAGT-CAACCTT TTC ACGCTTGAACATTTGCCCCG TCTTTTACAACTACA SpyM3_1150 1175741 - 1174797 - | hypothetical protein TERM 1481 1174893 - 1174903 + g 83 -3.2 -5.61881 | CTCCTCTCCCGTTTG TGGC AGG GCTA TTTTTCTTTTTGCAA TERM 1482 1175925 - 1175899 - R 78 -7.4 -4.09285 | overlap 1175901 TATGAAAATATCAAA TACCAAACATAA TCT TAATGTTTGGCA AGTAGTTCACGAGCC TERM 1483 1175923 - 1175901 - R 71 -7.8 -3.62411 | overlap 1175899 TGAAAATATCAAATA CCAAACATAA TCT TAATGTTTGG CAAGTAGTTCACGAG recN 1177574 - 1175913 - | putative DNA repair and genetic recombination protein TERM 1484 1176084 - 1176070 - G 77 -5 -4.99043 | overlap 1176072 TCTTTAGAAATAAAA TACTGA TAA TCAGCA ATAGCAATAACTTGA TERM 1485 1176459 - 1176506 + g 71 -4.1 -4.86033 | opp_overlap 1176487, overlap 1176453 1176488 TTCTAATTGCTCTGC CAATTGATGGCGGCGTTCACT CAAGTT AGTGGCTGCAGCAACCAATTG TTTTTCTAAGGCTTT SpyM3_1152 1178066 - 1177596 - | putative repressor protein TERM 1486 1177974 - 1177951 - G 71 -9.6 -2.84325 | opp_overlap 1177951, overlap 1177948 1177946 TCTCTTGAAATAGTA GCCTGGGTTA ATTC TAACCCATGC TCTGCTAATAATCTT TERM 1487 1177951 - 1177974 + g 71 -9.6 -2.84459 | opp_overlap 1177948 1177946 1177951 TCTCTTGAAATAGTA GCCTGGGTTA ATTC TAACCCATGC TCTGCTAATAATCTT hlyA 1178880 - 1178053 - | putative hemolysin fps 1179745 - 1178873 - | putative geranyltranstransferase TERM 1488 1179000 - 1179031 + g 85 -7.2 -4.84359 | AACAGTTGGTAGGAG GCTTCTAACCCCAG TAAA CTTGGGTAAGTAGC TTTTTCTGCAAATAA xseB 1179960 - 1179745 - | exodeoxyribonuclease VII small subunit TERM 1489 1179784 - 1179797 + g 76 -3.1 -5.25803 | GCCATCAGCTTGCAT CACTT TGAC GAGTG TTTTTTCTGCCGCTT xseA 1181278 - 1179938 - | exodeoxyribonuclease VII large subunit TERM 1490 1181068 - 1181083 + g 80 -4.7 -5.26316 | TTTTCATGCCTTCTT CTAGG TCGAAT CCTAG TTTTTTATAGACTCC TERM 1491 1181397 - 1181378 - R 91 -2.8 -5.98675 | opp_overlap 1181379, overlap 1181379 CAGAAAAACAAAAAA GGAAGCCA TTGC TGACTTCT TATATTCTCTTATGT TERM 1492 1181396 - 1181379 - R 71 -6.3 -4.15545 | opp_overlap 1181379, overlap 1181378 AGAAAAACAAAAAAG GAAGCCA TTGC TGACTTC TTATATTCTCTTATG folD 1182285 - 1181431 - | methenyltetrahydrofolate cyclohydrolase SpyM3_1158 1184187 - 1182493 - | putative phosphomannomutase TERM 1493 1182925 - 1182939 + g 73 -7.8 -3.85698 | opp_overlap 1182925 TACAATCATCATAGA GGCGCT AAC AGCGTC TTTGTCACGAACAAA TERM 1494 1183606 - 1183622 + g 71 -5.1 -4.63675 | overlap 1183603 1183607 AAGTCCACTGTCCAG AGCCTTT TCA AAAGGCA TTTGTTTGATTTCCT TERM 1495 1183607 - 1183621 + g 70 -8.6 -3.36578 | overlap 1183606 1183603 AGTCCACTGTCCAGA GCCTTT TCA AAAGGC ATTTGTTTGATTTCC phr 1185774 - 1184365 - | putative deoxyribodipyrimidine photolyase TERM 1496 1184643 - 1184627 - G 90 -10.9 -4.2142 | AATATTCTAAAATAA GGAACAG CAT CTGTTCC AGTGGAAGCAGCCCA TERM 1497 1185866 - 1185908 + r 100 -24 -3.14463 | opp_overlap 1185866 1185874, overlap 1185874 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TGA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1498 1185908 - 1185866 - R 100 -24 -3.73968 | opp_overlap 1185866 1185874, overlap 1185874 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TGA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1499 1185900 - 1185874 - R 100 -16.8 -4.63172 | opp_overlap 1185866 1185874, overlap 1185866 TAGCAAATTATAAAA GGAAGTCCTAAA TGA TTTAGGACTTCC TTTTATAATTCATAG TERM 1500 1185874 - 1185900 + r 100 -16.8 -4.56607 | opp_overlap 1185874 1185866, overlap 1185866 TAGCAAATTATAAAA GGAAGTCCTAAA TGA TTTAGGACTTCC TTTTATAATTCATAG SpyM3_1160 1186657 - 1185923 - | putative amino acid ABC transporter ATP-binding protein SpyM3_1161 1187343 - 1186657 - | putative amino acid ABC transporter (permease protein) TERM 1501 1187458 - 1187428 - R 83 -10.6 -3.30007 | opp_overlap 1187434 1187436 1187454, overlap 1187436 AATACTTTTTGACAA TAAAAAAACCTGCC TCA GGCAAGTCTCTTTA CTATGTCAAGCTTAA TERM 1502 1187450 - 1187436 - R 100 -7.8 -5.88565 | opp_overlap 1187436 1187434, overlap 1187428 TTGACAATAAAAAAA CCTGCC TCA GGCAAG TCTCTTTACTATGTC SpyM3_1162 1187700 - 1187470 - | hypothetical protein clpE 1187998 - 1190280 + | putative ATP-dependent protease TERM 1503 1190289 - 1190316 + F 77 -5.6 -5.01546 | opp_overlap 1190291 1190293 1190306, overlap 1190291 CGATTAACGTTAGCT AAGAGAGTTTCT ATAA GGAGACTCTCTC TTTTTCTATCAATTT TERM 1504 1190291 - 1190314 + F 81 -8.2 -4.11744 | opp_overlap 1190291 1190293 1190306, overlap 1190289 ATTAACGTTAGCTAA GAGAGTTTCT ATAA GGAGACTCTC TCTTTTTCTATCAAT mutT 1190408 - 1190863 + | MutT/NUDIX family mutator protein SpyM3_1165 1190914 - 1191216 + | hypothetical protein TERM 1505 1191265 - 1191242 - T 100 -10.4 -4.55287 | opp_overlap 1191242 GCTATTCAGACAAAA CTTAGCCCTT CTAA AAGAGCTAAG TTTTTTTATTAGCGA TERM 1506 1191242 - 1191265 + T 100 -8.2 -5.7946 | opp_overlap 1191242 GCTATTCAGACAAAA CTTAGCCCTT CTAA AAGAGCTAAG TTTTTTTATTAGCGA TERM 1507 1191440 - 1191417 - T 100 -13.2 -5.14965 | opp_overlap 1191417 AGCTCTACTAAAAAA CCATCAGGTC CTAA GACCCGATGG TTGTCTTCTTACTCA TERM 1508 1191417 - 1191440 + T 90 -11 -3.85505 | opp_overlap 1191417 AGCTCTACTAAAAAA CCATCAGGTC CTAA GACCCGATGG TTGTCTTCTTACTCA ileS 1194282 - 1191481 - | isoleucyl-tRNA synthetase TERM 1509 1194150 - 1194137 - G 70 -8.1 -3.77831 | opp_overlap 1194136 TCATGAAGATGGAAA GCTGG TTTG CCAGC ATTAAGTTCTTGGCG divIVA 1195313 - 1194555 - | putative cell-division initiation protein SpyM3_1168 1196114 - 1195323 - | RNA binding protein SpyM3_1169 1196368 - 1196114 - | hypothetical protein SpyM3_1170 1197029 - 1196373 - | hypothetical protein SpyM3_1171 1197712 - 1197041 - | hypothetical protein ftsZ 1199034 - 1197715 - | cell division protein FtsZ ftsA 1200422 - 1199058 - | putative cell division protein TERM 1510 1200419 - 1200408 - G 73 -2.2 -5.243 | CAAACCAGTAAAAAA GCCA TTTC TAGC CATTCACTTGACCTC TERM 1511 1200513 - 1200534 + r 100 -10.3 -5.60689 | opp_overlap 1200513 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA TERM 1512 1200534 - 1200513 - R 100 -10.3 -5.69473 | opp_overlap 1200513 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA divIB 1201781 - 1200633 - | putative cell division protein TERM 1513 1201569 - 1201579 + g 73 -5.4 -4.49344 | TTCTGACTCAATTTC CTGA CTA TCAG TTTTCTCATCAGTTT TERM 1514 1201605 - 1201617 + g 71 -6.3 -4.20696 | overlap 1201598 AGTTTTAAGCTCAAC TGCTT CAG AAGCA TTTTGAGCTTGCTGC murG 1202885 - 1201782 - | N-acetylglucosaminyl transferase murD 1204222 - 1202864 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 1515 1202960 - 1202935 - G 75 -10.5 -3.00544 | overlap 1202928 1202926 1202937 CAAAATTAGGATACA TATCCCAGCTA GCAT TAGCTGGGCTA AGCAAGATAGTATCG TERM 1516 1204506 - 1204535 + r 89 -8.8 -4.50976 | gap 1, opp_overlap 1204506, overlap 1204501 TGAACTATTAAAAAA GGACTGATATTGT CTAAA ACAA-ATCAGTCC TTTTATCGTGTAAAA TERM 1517 1204535 - 1204506 - R 100 -9.5 -5.2189 | gap 1, opp_overlap 1204501 1204506 TGAACTATTAAAAAA GGACTGATATTGTC TAA AACAA-ATCAGTCC TTTTATCGTGTAAAA SpyM3_1177 1204829 - 1204578 - | hypothetical protein TERM 1518 1204920 - 1204876 - R 78 -10.4 -2.76737 | opp_overlap 1204877 TAGGAACTTGTAAAC GCAAAAAGACCTTTAAAAAA TGACT TTTCTTAAATATCTTTTTGC TATTTTATTTAGTTA SpyM3_1178 1206657 - 1204951 - | putative GTP-binding protein TypA/BipA SpyM3_1179 1207364 - 1206975 - | hypothetical protein glcK 1208345 - 1207374 - | putative glucose kinase SpyM3_1181 1208571 - 1208350 - | hypothetical protein TERM 1519 1208525 - 1208508 - G 83 -4.9 -5.33026 | opp_overlap 1208508 CAAGGTAAACAAAAA TGCCAAA GTTT TTTAGCA ATTGTTGCACATCAT TERM 1520 1208672 - 1208649 - R 84 -6.1 -5.26316 | opp_overlap 1208649 TGATTCCATAAAAAA GAAGCCAAT TTTATC ATTGACTTC TTTTATCCTAAGGCA dpr 1209222 - 1208695 - | putative peroxide resistance protein TERM 1521 1208721 - 1208741 + g 70 -2.5 -5.04385 | overlap 1208724 1208725 GGCCTTGTCCACGCT CTGCTTGGA GCA TCCAAATGG TTTTTTCAGCCTCTG TERM 1522 1208964 - 1208954 - G 73 -8.2 -3.80733 | GCTAGGGTAGAATAA GGCG CTC CGCC AATAGTGATCAAACG SpyM3_1183 1209450 - 1210076 + | hypothetical protein TERM 1523 1210111 - 1210090 - T 95 -8.8 -5.37043 | opp_overlap 1210089 1210088 AGGCCAGATAAAAAA CCTAGTCA TTTTAG TGACTAGG AATATTTTGTCATCA SpyM3_1184 1211237 - 1210158 - | hypothetical protein TERM 1524 1210531 - 1210515 - G 71 -9.5 -2.80545 | overlap 1210514 1210512 TATAGCTGAAAAGAG CTTTTCC AGC GGAAAAG AGCGATTTACTCGCA SpyM3_1185 1211861 - 1211241 - | hypothetical protein TERM 1525 1211837 - 1211848 + g 70 -3 -5.14819 | TATTATAGTTGTACA TTTC TGGC GAAA TTTCTTTTTTCATTT SpyM3_1186 1213286 - 1212309 - | putative ribose transport operon repressor TERM 1526 1213644 - 1213596 - R 76 -4.5 -5.08824 | opp_overlap 1213596 1213597, overlap 1213597 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTATGAGTTAA TERM 1527 1213596 - 1213644 + r 79 -4.5 -5.31456 | opp_overlap 1213596 1213597, overlap 1213597 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTATGAGTTAA TERM 1528 1213643 - 1213597 - R 73 -8 -3.64812 | opp_overlap 1213597 1213596, overlap 1213596 TTTTATGTAAAAAAT GATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACC GTTTTTTATGAGTTA SpyM3_1187 1214737 - 1213700 - | hypothetical protein TERM 1529 1213896 - 1213867 - G 70 -5.7 -4.36592 | opp_overlap 1213867, overlap 1213870 TCGGAACAAAAAATA TATCTGCACCAGC TTCA GCTGCTGCAACTA CTTTAAGACCTGCAC coaD 1215215 - 1214724 - | phosphopantetheine adenylyltransferase SpyM3_1189 1215744 - 1215205 - | putative type II DNA modification methyltransferase asnA 1216859 - 1215867 - | asparagine synthetase AsnA TERM 1530 1217040 - 1217007 - R 100 -14.9 -4.37711 | opp_overlap 1217012, overlap 1217012 CTATCAAAGCTAAAA GAAAAGGCTAATTCT CAAT AAAATTAGCCTTTTC TAATACTACTATTGT TERM 1531 1217035 - 1217012 - R 95 -9 -5.14698 | opp_overlap 1217012, overlap 1217007 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTACT TERM 1532 1217012 - 1217035 + r 76 -6.8 -4.49311 | opp_overlap 1217012 1217007 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTACT arcC 1218122 - 1217172 - | carbamate kinase SpyM3_1192 1219473 - 1218142 - | hypothetical protein SpyM3_1193 1220983 - 1219490 - | putative arginine repressor TERM 1533 1221059 - 1221013 - R 100 -11.1 -4.83169 | gap 2, opp_overlap 1221013 1221016, overlap 1221016 ACCTTTTCATAAAAA TAAGCCGTTCTAGTTC-CG-GTC AAG GACACGAGAACCAGAACGACTTG TCATGTAGTTAAAGT TERM 1534 1221016 - 1221056 + r 72 -8.4 -3.49858 | gap 2, opp_overlap 1221016 1221013, overlap 1221013 TTTTCATAAAAATAA GCCGTTCTAGTTC-CG-GTC AAG GACACGAGAACCAGAACGAC TTGTCATGTAGTTAA TERM 1535 1221056 - 1221016 - R 100 -12.8 -4.52873 | gap 2, opp_overlap 1221013 1221016, overlap 1221013 TTTTCATAAAAATAA GCCGTTCTAGTTC-CG-GTC AAG GACACGAGAACCAGAACGAC TTGTCATGTAGTTAA arcB 1222166 - 1221153 - | ornithine carbamoyltransferase TERM 1536 1221579 - 1221596 + g 71 -6.3 -4.25256 | opp_overlap 1221579 1221578 AGCCAATGTCACAAT CTCTTCT TCTG GGAAGAG TTCTTTTGGTGAGAA SpyM3_1195 1222634 - 1222206 - | hypothetical protein TERM 1537 1222290 - 1222303 + g 71 -5.3 -4.56775 | GTCCATATTCTTCTC CCATT TAAG AATGG TTTTTGCAAGGGACT arcA 1223969 - 1222734 - | arginine deiminase TERM 1538 1223189 - 1223202 + g 70 -3.1 -4.87803 | overlap 1223190 CAAAGGCCAATACTT TCTTG AAGC CAAGG TTTTGTTTAAAGATG TERM 1539 1224097 - 1224115 + r 70 -3.8 -4.855 | overlap 1224092 GCCATTTTGAGTAAT CGCTTACA TTT TTTGAGCG TTGTTTTTATTTTTA SpyM3_1197 1224925 - 1224245 - | putative CRP/FNR transcriptional regulator TERM 1540 1224802 - 1224812 + g 70 -3.2 -4.87318 | CTCCCTCAAAAAAAA GGAT ATG GTCC TTTTTAGCTTTTCGG argR 1225067 - 1225540 + | putative arginine repressor TERM 1541 1225620 - 1225663 + T 100 -7.6 -5.80364 | gap 1, opp_overlap 1225620 AAATCTCATCAAAAA GCGAGTAAACGAA-AACCT AAATGAC AGGACATTCGTTTACTCGC TTTTTTTGTTAACCT TERM 1542 1225663 - 1225620 - T 100 -10.5 -4.75404 | gap 1, opp_overlap 1225620 AAATCTCATCAAAAA GCGAGTAAACGAA-AACCTA AATGA CAGGACATTCGTTTACTCGC TTTTTTTGTTAACCT SpyM3_1199 1226423 - 1225707 - | hypothetical protein SpyM3_1200 1227516 - 1226437 - | hypothetical protein yesM 1229322 - 1227589 - | putative two-component sensor histidine kinase TERM 1543 1227696 - 1227711 + g 73 -7.6 -4.10161 | TGGTCATGTGGTAGC CTTCAC CATA GTGAAG TTTTAACCGCTGGTC yesN 1230059 - 1229319 - | putative two-component response regulator TERM 1544 1230033 - 1230007 - G 91 -11.7 -4.12947 | opp_overlap 1230005 1230007 1230011 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1545 1230007 - 1230033 + g 73 -9.5 -3.25192 | opp_overlap 1230007, overlap 1230005 1230011 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1546 1230099 - 1230084 - R 73 -7.5 -3.87815 | opp_overlap 1230084 CCTTATCTTTATAAA GGGCC TTGCAT GGCCC TCTCATACTAGTCTT TERM 1547 1230286 - 1230299 + r 86 -5.3 -5.76237 | AGCATCTGATTTCGG GACTT GGAA AAGTC TTTTTTATTTGTCTA SpyM3_1203 1230486 - 1230304 - | hypothetical protein TERM 1548 1230517 - 1230538 + r 100 -10.2 -5.46657 | opp_overlap 1230517 1230520 TATTTATTCGTAAAA GAAGAGGG AGACCC CCCTCTTC TTTTTTGTTAAACTA TERM 1549 1230538 - 1230517 - R 100 -10.9 -4.11692 | opp_overlap 1230517, overlap 1230520 TATTTATTCGTAAAA GAAGAGGGA GACC CCCCTCTTC TTTTTTGTTAAACTA TERM 1550 1230532 - 1230520 - R 75 -6.9 -4.18506 | opp_overlap 1230517, overlap 1230517 TTATTCGTAAAAGAA GAGGG AGA CCCCC CTCTTCTTTTTTGTT sla 1231407 - 1230832 - | streptococcal phospholipase A2 - phage associated TERM 1551 1231741 - 1231772 + r 79 -10.2 -2.78266 | opp_overlap 1231746, overlap 1231746 TTCCTTAAAAAACAC AAAAACCGCCCAGA ATTA TCTGAGCGGTTTTG TCATATTCCTCGGTT TERM 1552 1231767 - 1231746 - R 100 -12.3 -5.41787 | opp_overlap 1231746 1231741 TAAAAAACACAAAAA CCGCCCAGA ATTA TCTGAGCGG TTTTGTCATATTCCT TERM 1553 1231746 - 1231767 + r 100 -10.1 -4.55625 | opp_overlap 1231746, overlap 1231741 TAAAAAACACAAAAA CCGCCCAGA ATTA TCTGAGCGG TTTTGTCATATTCCT speK 1232662 - 1231883 - | streptococcal pyrogenic exotoxin SpeK - phage associated TERM 1554 1232936 - 1232957 + r 73 -7.2 -4.07772 | opp_overlap 1232936 TTTGCACACAAAAAA CCGCCCTC AATCAA GAGAGCGG TTGGTTTTTTATTTA TERM 1555 1232957 - 1232936 - R 100 -9.4 -5.36441 | opp_overlap 1232936 TTTGCACACAAAAAA CCGCCCTC AATCAA GAGAGCGG TTGGTTTTTTATTTA SpyM3_1206 1233832 - 1232966 - | hypothetical protein SpyM3_1207 1234344 - 1233820 - | hypothetical protein TERM 1556 1233896 - 1233908 + g 73 -7.7 -3.91332 | GTATATTTAATTCCT TGGAC ACC GTCCA TTATTCTATCCTCAT TERM 1557 1234474 - 1234450 - R 80 -4.8 -5.23316 | opp_overlap 1234451 1234452, overlap 1234452 TAGGATACCAAAAAA CAGCCCCCGC AAAAA GCGAGGGCAT TTGTCTTATCTAATT TERM 1558 1234451 - 1234473 + r 72 -6.1 -4.31766 | opp_overlap 1234450 1234452, overlap 1234452 AGGATACCAAAAAAC AGCCCCCGC AAAAA GCGAGGGCA TTTGTCTTATCTAAT TERM 1559 1234472 - 1234452 - R 100 -11.8 -4.23988 | opp_overlap 1234451 1234452, overlap 1234450 GGATACCAAAAAACA GCCCCCGC AAAAA GCGAGGGC ATTTGTCTTATCTAA TERM 1560 1234452 - 1234472 + r 79 -9.6 -3.17975 | opp_overlap 1234452 1234450, overlap 1234451 GGATACCAAAAAACA GCCCCCGC AAAAA GCGAGGGC ATTTGTCTTATCTAA SpyM3_1208 1235686 - 1234484 - | putative cell wall hydrolase, lysin - phage associated TERM 1561 1234657 - 1234678 + g 84 -12.3 -2.94062 | opp_overlap 1234655 AGATACCTACAACCT CGCTGGCTA GACT TGGCCAGCG TCTGATATTGATCTC TERM 1562 1234876 - 1234889 + g 71 -5.3 -4.63932 | CATATAAGGCGTCTG CATTG CCAT CAATG TTTTGTTCAACAGTC SpyM3_1209 1235982 - 1235797 - | hypothetical protein SpyM3_1210 1236275 - 1235979 - | hypothetical protein TERM 1563 1236157 - 1236185 + g 85 -6.8 -5.01732 | gap 1 GAGTCCTTGAGTTGA GCCATGGCAAACT CATT AGCTT-CCATGGC TTTTTTAAAGGGATT SpyM3_1211 1236897 - 1236286 - | hypothetical protein SpyM3_1212 1237331 - 1236900 - | hypothetical protein SpyM3_1213 1239226 - 1237343 - | hypothetical protein TERM 1564 1237851 - 1237827 - G 74 -6.5 -4.32034 | overlap 1237831 GCATTACTATTAAAA TCCATCTTAGC CGA GCTAAGATCAA TAAGCATAGCGCCAT TERM 1565 1237847 - 1237831 - G 71 -9.5 -2.78495 | overlap 1237827 TACTATTAAAATCCA TCTTAGC CGA GCTAAGA TCAATAAGCATAGCG TERM 1566 1238083 - 1238096 + g 71 -5.3 -4.59511 | TGACAGTGGTATTGC CATCA AGAG TGATG TTTTTACCAGCTATT TERM 1567 1238703 - 1238713 + g 71 -6.8 -4.09864 | CCGATTTTATCATTG GCCA TTG TGGC TTTTAGCCCCTCGAT hylP.4 1240254 - 1239241 - | hyaluronidase - phage associated TERM 1568 1239582 - 1239594 + g 79 -5.5 -4.84359 | CATGAGTAATTTTTA GCGTT CCT AGCGC TTTTTCTGACCCTCG SpyM3_1215 1242395 - 1240251 - | hypothetical protein TERM 1569 1241516 - 1241549 + g 100 -8.1 -5.98675 | CCTTAAGGTATTTCT GAGCCAGCTTTCGGA TTTC TTCGATCGTTGGCTC TTTTTTATTTTTGTC TERM 1570 1242076 - 1242089 + g 71 -6.7 -4.09243 | GCTCCTACGCTCGCA CCGTT TACA AACGG TTTTAAAGCAATATC SpyM3_1216 1243108 - 1242392 - | hypothetical protein SpyM3_1217 1246365 - 1243105 - | putative minor tail protein - phage associated TERM 1571 1243316 - 1243356 + g 93 -11.4 -4.53303 | gap 1, opp_overlap 1243314 GGGGTCGCATTAATC GTCATTGACTCTTTTA-GC TTTT GCATAGATGAGTCAATGAC TTTTCTATCCGCATC TERM 1572 1245731 - 1245751 + g 76 -4.7 -5.02074 | opp_overlap 1245731 1245732, overlap 1245732 AACTTATTAGAAAAT TGGTCAAAT GTT ATTTGCCCG TTTTTTAACGCCTCA SpyM3_1218 1246936 - 1246355 - | hypothetical protein SpyM3_1219 1247374 - 1246940 - | hypothetical protein TERM 1573 1247390 - 1247407 + r 72 -8.4 -3.50572 | opp_overlap 1247390, overlap 1247379 AATTCCTCCTTAAAA GGGTGG TTTAGC CCACCC TTGTCTCACATCGCT TERM 1574 1247407 - 1247390 - R 79 -8.4 -4.08064 | opp_overlap 1247379 1247390 AATTCCTCCTTAAAA GGGTGG TTTAGC CCACCC TTGTCTCACATCGCT SpyM3_1220 1247898 - 1247413 - | putative major tail shaft protein - phage associated SpyM3_1221 1248296 - 1247898 - | putative minor capsid protein - phage associated TERM 1575 1248142 - 1248162 + g 71 -6.9 -4.01381 | GGCAGGCTTATCTCA CGAGTAC CGTCCAT GTACTCG TTATTTACCTTACCT SpyM3_1222 1248649 - 1248293 - | putative minor capsid protein - phage associated SpyM3_1223 1249011 - 1248649 - | putative minor capsid protein - phage associated TERM 1576 1248911 - 1248893 - GR 93 -9.6 -4.18401 | GGAGAGAGTGTAAAA GGTTCGTC ATA GACAAACC CTCCATAATCACCTT SpyM3_1224 1249387 - 1248971 - | hypothetical protein TERM 1577 1249129 - 1249155 + gr 73 -9.5 -2.80195 | opp_overlap 1249126 1249136, overlap 1249126 1249131 GTCCTAGAGATATTC CAGCAAAGGAT TGTTT ATCCTCTGCTG TCATTACTCCTGAGT TERM 1578 1249285 - 1249297 + gr 77 -4.8 -4.95854 | opp_overlap 1249279 AGTAAAGATTGACAG CGTG GCTAG CACG TTTTTCCATTTTTTC SpyM3_1225 1250259 - 1249441 - | putative major capsid/head protein - phage associated TERM 1579 1250207 - 1250227 + g 72 -9.7 -2.97721 | overlap 1250206 GCGTCAATCATATCC GCTAGAACC TCA GGGTCTAGC ATTTGTGCCATTTTA SpyM3_1226 1250871 - 1250263 - | hypothetical protein TERM 1580 1250592 - 1250607 + g 78 -7.6 -4.3453 | CCTTATTGTTTGCCC GAGCTT CCTC AAGCTC TTTGTCTTTAGCATT TERM 1581 1250963 - 1250948 - R 82 -5.4 -5.21236 | opp_overlap 1250948 AAGGCATAATAAAAA GCCGTA TTGC TACGAC TTTGATTTCTAAAGG SpyM3_1227 1251269 - 1251003 - | hypothetical protein SpyM3_1228 1251570 - 1251331 - | hypothetical protein SpyM3_1229 1253020 - 1251542 - | putative minor capsid protein - phage associated SpyM3_1230 1254527 - 1253025 - | putative minor capsid protein - phage associated TERM 1582 1253757 - 1253772 + g 72 -9 -3.35176 | opp_overlap 1253755 1253753 1253757, overlap 1253747 GTTATCAAAGATAGA TAGCCC AAGT GGGCTA TTAATATCCTTGTTA TERM 1583 1253772 - 1253757 - G 70 -9 -3.21269 | opp_overlap 1253757 1253747, overlap 1253755 1253753 GTTATCAAAGATAGA TAGCCC AAGT GGGCTA TTAATATCCTTGTTA SpyM3_1231 1255752 - 1254541 - | putative terminase large subunit - phage associated TERM 1584 1255560 - 1255572 + g 77 -4.8 -4.88405 | opp_overlap 1255552 TTAACAAGTGATCTC CACG CTCGT CGTG TTTTATTTCGCAGTT TERM 1585 1255665 - 1255675 + g 70 -5.4 -4.46656 | opp_overlap 1255664 1255661, overlap 1255671 CTTGATTATAAGCAG TCAC AAG GTGA TTTTCATCTTCTGAC TERM 1586 1255787 - 1255802 + r 87 -6.8 -5.5454 | opp_overlap 1255787 ATTCGTAGTTAAAAT GGCGTC TAAT GACGTC TTTTTGTTTATTTGA SpyM3_1232 1256308 - 1255835 - | hypothetical protein TERM 1587 1256357 - 1256343 - R 95 -5.7 -6.20267 | TTAAAAATAAAAAAA GAAGC AATCA GCTTC TTCAAATCGTTTTAT SpyM3_1233 1256736 - 1256359 - | hypothetical protein SpyM3_1234 1257066 - 1256797 - | hypothetical protein SpyM3_1235 1257866 - 1257189 - | putative ABC transporter ATP-binding protein - phage associated SpyM3_1236 1258363 - 1257845 - | hypothetical protein TERM 1588 1258411 - 1258393 - RH 100 -9.6 -5.24796 | opp_overlap 1258393 TTTACATAATAAAAA GTCACCAC AAT GTGATGAC TAATTGGTTAACTAT SpyM3_1238 1258863 - 1258600 - | hypothetical protein SpyM3_1237 1258444 - 1258701 + | hypothetical protein SpyM3_1239 1259212 - 1258973 - | hypothetical protein SpyM3_1240 1259780 - 1259340 - | hypothetical protein TERM 1589 1259831 - 1259849 + r 82 -4.5 -5.54907 | overlap 1259825 AAATTTAACCAAGGG GGCGTTC CGTGT GGACGTC TTTTTGTTTTGTGGA SpyM3_1241 1260727 - 1260221 - | hypothetical protein SpyM3_1242 1260894 - 1260724 - | hypothetical protein TERM 1590 1260772 - 1260758 - G 83 -6.4 -5.04987 | AATACTTTTAAAAAA CACTGC TCA GCAATG ACTTGATCACTGCCT SpyM3_1243 1261295 - 1260891 - | hypothetical protein SpyM3_1244 1261574 - 1261305 - | hypothetical protein SpyM3_1245 1261855 - 1261571 - | hypothetical protein SpyM3_1246 1262100 - 1261849 - | hypothetical protein SpyM3_1247 1262453 - 1262097 - | hypothetical protein SpyM3_1248 1262890 - 1262450 - | hypothetical protein TERM 1591 1262561 - 1262575 + g 73 -5.6 -4.63542 | CTCTGATTTTGATAT GCTGTC ATA GACTGC TTTTTCAAGATTGTC SpyM3_1249 1263518 - 1263099 - | putative single-strand DNA-binding protein - phage associated TERM 1592 1263321 - 1263339 + g 73 -7.5 -4.08394 | GATCAAAGCACCTTT TTTAGCC CAGTT GGCTAAA TTTTCAGCAGACTGT SpyM3_1250 1264185 - 1263511 - | putative recombination protein - phage associated SpyM3_1251 1264668 - 1264186 - | hypothetical protein TERM 1593 1264464 - 1264479 + g 74 -6.2 -4.45259 | CTTCTGCTTGCTTTT GCTTTT TGTA AAAAGC TTCTTTTTCGGCTTT SpyM3_1252 1264944 - 1264690 - | hypothetical protein SpyM3_1253 1265325 - 1265092 - | hypothetical protein SpyM3_1254 1265719 - 1265306 - | hypothetical protein SpyM3_1255 1266092 - 1265841 - | putative replication protein - phage associated SpyM3_1256 1266377 - 1266192 - | hypothetical protein SpyM3_1257 1266750 - 1266406 - | hypothetical protein TERM 1594 1266715 - 1266732 + g 100 -7.7 -5.59357 | ATAGTATTCTTTAGA GTCCGAT TGCC GTCGGAC TTTTTTTGATATAAT SpyM3_1258 1267163 - 1266909 - | hypothetical protein TERM 1595 1267003 - 1267025 + gH 84 -7.8 -4.76874 | opp_overlap 1267007 GATAACTCCTCTTTA GACATCAG CTTGAGA CTGATGTC TTTTGCTTTTCTGTT SpyM3_1259 1267152 - 1267352 + | hypothetical protein TERM 1596 1267360 - 1267384 + Tr 100 -12.9 -4.86731 | opp_overlap 1267362 TTGTCTAATCTAGTA GAGTTCCGCTC ACT GGGTGGAACTC TTTTGTTTCCACAAG SpyM3_1260 1267498 - 1267349 - | hypothetical protein SpyM3_1261 1268259 - 1267531 - | putative P1-type antirepressor - phage associated SpyM3_1262 1268461 - 1268270 - | hypothetical protein TERM 1597 1268883 - 1268911 + H 77 -3.1 -5.4505 | opp_overlap 1268876, overlap 1268876 ATAAAAACTTGTAAA CACTTTCCAATGT GTA ATAACGGAGAGTG TTTTTTATTGAGCAG TERM 1598 1268941 - 1268967 + H 100 -10.2 -5.35224 | GAATAATTTCCGTAG CACCATCTAGAT AGC AGCTAGGTGGTG TTTTATTTTTGTAAG TERM 1599 1269063 - 1269083 + H 70 -4.1 -4.66537 | opp_overlap 1269065, overlap 1269065 GGCATAAGAAAAACC TAGTTATAA CCT TTATAACTC TTTTATATTGCGCAG TERM 1600 1269538 - 1269515 - g 82 -3.8 -5.47821 | opp_overlap 1269521, overlap 1269517 1269518 ATCGATCTAAAAAAA GATGCAGAAG AAAC CTTCTTCTTC GACGGACACGAACTC SpyM3_1263 1269257 - 1269616 + | putative repressor - phage associated TERM 1601 1269740 - 1269726 - g 78 -2.8 -5.45652 | overlap 1269732 ATGTTTAATAAAAAA CACAAC GTC ATTGCG ATTGACACTTATCTT SpyM3_1264 1269630 - 1270010 + | hypothetical protein SpyM3_1265 1270021 - 1270542 + | hypothetical protein TERM 1602 1270760 - 1270742 - g 78 -3.9 -5.28755 | gap 1, overlap 1270745 AAATACACTAAAAAA GAT-GGCA CAAC TGCCTATC GCTTAAGAGCATACC int315.4 1270661 - 1271815 + | putative integrase - phage associated msrA.1 1273032 - 1271926 - | bifunctional methionine sulfoxide reductase A/B protein TERM 1603 1272404 - 1272427 + g 74 -3.8 -5.08601 | opp_overlap 1272408 1272410, overlap 1272410 GTCGCTTGGTTAATA TCAATATGGC AGTA GCCATTTGGA TTTTTCTTGAGGTAA SpyM3_1268 1273698 - 1273075 - | hypothetical protein ccdA 1274421 - 1273711 - | putative cytochrome C-type biogenesis protein TERM 1604 1274575 - 1274549 - R 100 -10.9 -4.69027 | opp_overlap 1274549 AAAGGCATGTAAAAA CCCGACCTC ATTAAAAGA GAGGTCGGG TTCATGACGAAAATC TERM 1605 1274549 - 1274575 + r 88 -13 -3.14344 | opp_overlap 1274549 AAAGGCATGTAAAAA CCCGACCTCATT AAA AGAGAGGTCGGG TTCATGACGAAAATC SpyM3_1270 1275574 - 1274642 - | putative divalent cation transport protein SpyM3_1271 1276625 - 1275666 - | putative oxidoreductase TERM 1606 1276777 - 1276750 - H 100 -10 -4.67353 | opp_overlap 1276752 1276756 1276757 1276772 1276773, overlap 1276773 TTAGTCACGCAAAAA TAAGAACCTTGG TAAA CCAAGATTCCTA TTAGGAGTTCTGTAA SpyM3_1272 1277635 - 1278414 + | hypothetical protein TERM 1607 1278603 - 1278568 - T 100 -11.2 -4.87807 | gap 1 TGAATATAGCAAAAA GCCCTGTCACTTAGACC GAT GGTCTA-GCGGCAGGAC TCTGCGGAAGCAATG valS 1281278 - 1278630 - | valyl-tRNA synthetase TERM 1608 1278738 - 1278764 + g 76 -4.4 -5.00884 | overlap 1278736 1278739 AACTTCTGGTTTGGC GTTGGCAACAAA GCG TTCGTTGCCGAG TTTTTTGCCGACCAT SpyM3_1274 1281588 - 1281280 - | hypothetical protein SpyM3_1275 1281795 - 1281613 - | hypothetical protein SpyM3_1276 1281920 - 1281792 - | hypothetical protein TERM 1609 1282181 - 1282154 - R 100 -12.8 -4.17906 | opp_overlap 1282151 AATGAAACCAAATAA TCCCTATCCAGC TTAC ACTGGACAGGGA CGAATTTCGTGTTAC SpyM3_1277 1282791 - 1282396 - | hypothetical protein SpyM3_1278 1283066 - 1282812 - | hypothetical protein TERM 1610 1283316 - 1283343 + H 100 -9.3 -5.64274 | opp_overlap 1283316 GCATCTATAAAAAAA TACTGTCCTAA TAAGAT TTAGGGCAGTA TTTTTTTATAGCTAG TERM 1611 1283343 - 1283316 - H 93 -7.1 -5.64274 | opp_overlap 1283316 GCATCTATAAAAAAA TACTGTCCTAA TAAGAT TTAGGGCAGTA TTTTTTTATAGCTAG TERM 1612 1283580 - 1283594 + G 70 -3.6 -4.89477 | CTTTCAAAATAAGAC TTGTTC TAA GAATAA TTTTATTGTTGGACC aroA.2 1283545 - 1284297 + | 3-deoxy-7-phosphoheptulonate synthase TERM 1613 1285398 - 1285416 + G 90 -9.6 -4.33819 | opp_overlap 1285398 1285397, overlap 1285399 AAGACGATCACCAAT TTGTCGAG AAG CTCGACAG TTTATTATAAATAGT TERM 1614 1285399 - 1285415 + G 79 -10.9 -3.19568 | opp_overlap 1285398 1285397, overlap 1285398 AGACGATCACCAATT TGTCGAG AAG CTCGACA GTTTATTATAAATAG aroB 1284353 - 1285426 + | 3-dehydroquinate synthase TERM 1615 1285649 - 1285690 + T 93 -7.4 -5.54894 | opp_overlap 1285648 1285649 ATTTCGTCTAAAAAG CCTTAATGAGAAACCTAT AAGGAG ATAGGAAACTCATTAAGG TTTTTTTAGTGAATT TERM 1616 1285790 - 1285822 + T 74 -9.3 -3.10597 | opp_overlap 1285795, overlap 1285795 TCGCTTTGAATACGT AAAAAGAGAAGATGA GCG TCACCTTCTCTTTTG CTTTTCCATAGGCCA TERM 1617 1285817 - 1285795 - T 100 -11.4 -4.74706 | opp_overlap 1285790 1285795 TTGAATACGTAAAAA GAGAAGATGA GCG TCACCTTCTC TTTTGCTTTTCCATA TERM 1618 1285795 - 1285817 + T 100 -9.2 -4.68645 | opp_overlap 1285795, overlap 1285790 TTGAATACGTAAAAA GAGAAGATGA GCG TCACCTTCTC TTTTGCTTTTCCATA SpyM3_1281 1286167 - 1285862 - | putative acetate kinase SpyM3_1282 1286507 - 1286169 - | hypothetical protein SpyM3_1283 1287315 - 1286560 - | SAM-dependent methyltransferase aroE.1 1288446 - 1287568 - | putative shikimate 5-dehydrogenase SpyM3_1285 1292000 - 1288584 - | putative beta-galactosidase SpyM3_1286 1293504 - 1292020 - | putative two-component sensor response regulator TERM 1619 1293122 - 1293144 + g 71 -7.6 -3.90038 | overlap 1293124 TGCCGGATTGATTCT GCCTGCTGGG CAT CCAAGCAGTC TTTAAATTGTTTCAT TERM 1620 1293124 - 1293142 + g 72 -8.8 -3.5256 | overlap 1293122 CCGGATTGATTCTGC CTGCTGGG CAT CCAAGCAG TCTTTAAATTGTTTC SpyM3_1287 1295228 - 1293504 - | putative two-component sensor histidine kinase TERM 1621 1294393 - 1294382 - G 76 -4.4 -5.03994 | overlap 1294376 GGCCATACACAAAAA CTGT CCTG ACAG CTTCCGCTAATAAAT SpyM3_1288 1295823 - 1295218 - | hypothetical protein TERM 1622 1296100 - 1296081 - R 83 -7.8 -4.81212 | CTCATCAGAAGAAAA GAGCTGAG ATTT CCCAGCCC TCAACTTATAATCAA SpyM3_1289 1297574 - 1296129 - | putative sugar ABC transporter substrate binding protein TERM 1623 1297644 - 1297627 - R 71 -5.5 -4.59027 | opp_overlap 1297615 1297628, overlap 1297628 AATGATTAGATAAAA TCTGGTC TTGT GACCAGT TCCTTAAGTCCTATT TERM 1624 1297628 - 1297643 + r 75 -9 -3.38584 | opp_overlap 1297628 1297627, overlap 1297615 ATGATTAGATAAAAT CTGGTC TTGT GACCAG TTCCTTAAGTCCTAT TERM 1625 1297643 - 1297628 - R 75 -9 -3.34332 | opp_overlap 1297615 1297628, overlap 1297627 ATGATTAGATAAAAT CTGGTC TTGT GACCAG TTCCTTAAGTCCTAT SpyM3_1290 1298581 - 1297655 - | putative sugar ABC transporter permease protein SpyM3_1291 1299541 - 1298591 - | putative sugar ABC transporter substrate binding protein SpyM3_1292 1299737 - 1300615 + | putative sugar kinase TERM 1626 1301105 - 1301069 - T 78 -10.3 -2.71094 | AAGATGGATAGATGA TGCCAAACCAGACAGAA CGC TTATATCTAGTTCGGCA AATACCAACACCTTC TERM 1627 1301173 - 1301129 - T 78 -7.1 -4.42062 | opp_overlap 1301131, overlap 1301131 CACCTTCCAAAGAAA TACAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTGTT TAATCATTGGTAACA TERM 1628 1301171 - 1301131 - T 83 -9.7 -3.81557 | opp_overlap 1301131, overlap 1301129 CCTTCCAAAGAAATA CAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTG TTTAATCATTGGTAA SpyM3_1293 1302668 - 1301226 - | putative beta-glucosidase hyl 1304386 - 1302692 - | putative hyaluronidase TERM 1629 1303800 - 1303814 + g 70 -8.6 -3.38522 | overlap 1303799 ATCCCTTCTTCCTTG GCTACT GCA AGTAGC TCTTTGAAATAAGTC SpyM3_1295 1305477 - 1304437 - | putative transcription regulator (LacI family) SpyM3_1296 1305790 - 1306896 + | hypothetical protein TERM 1630 1308085 - 1308060 - g 82 -8.3 -4.26327 | gap 1, overlap 1308057 1308061 TATTTAGCAAAAGAA GCTGC-CCAGCA AAT TGCTGGCGCAGT TAACACGAGTGACTT TERM 1631 1308084 - 1308061 - g 83 -11.8 -3.15073 | gap 1, overlap 1308060 1308057 ATTTAGCAAAAGAAG CTGC-CCAGCA AAT TGCTGGCGCAG TTAACACGAGTGACT SpyM3_1297 1306911 - 1309616 + | putative sugar hydrolase TERM 1632 1309654 - 1309679 + T 95 -14.1 -3.28783 | opp_overlap 1309654, overlap 1309647 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA TERM 1633 1309679 - 1309654 - T 100 -11.9 -4.74453 | opp_overlap 1309654 1309647 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA SpyM3_1298 1311071 - 1309821 - | putative two-component response regulator histidine kinase TERM 1634 1310084 - 1310094 + g 74 -4 -5.10497 | TCGATACCTCAACCT TAAG CTT CTTA TTTTTTGCCTCAATT TERM 1635 1311463 - 1311474 + r 70 -4.4 -4.64846 | TGGTAATGTAACCTC CTGA CCAC TCAG TTTTCTAATTTATAG SpyM3_1299 1313091 - 1311736 - | putative RNA methyltransferase TERM 1636 1312035 - 1312057 + g 100 -12.8 -5.65177 | CCTCATAGTAAGCGT TGTCAAAGCC CAT GGCTTTGGCA TTTTTTTGTGCATCT TERM 1637 1312700 - 1312717 + g 79 -5.5 -4.90266 | TGAAACTGCAATTTG GCCCGAT AGTG ATCTGGC TTTTTCATTCCTAAA TERM 1638 1313261 - 1313277 + r 85 -4.4 -5.76237 | overlap 1313257 CCTCGACTATTCCCC GACTTC TGGAC GAGGTC TTTTTTATTTGTCTA SpyM3_1300 1313464 - 1313282 - | hypothetical protein TERM 1639 1314239 - 1314227 - g 71 -4.9 -4.52803 | TATAAAGTTAGAAAA TATCT TAC AGATA ATAAGCAACTATATA speA3 1313684 - 1314439 + | exotoxin type A precursor - phage associated TERM 1640 1314508 - 1314536 + T 91 -13.3 -3.31726 | opp_overlap 1314513, overlap 1314513 TTCTTTTATTAATGT AAAAACCGCTCAT TTG ATGAGCGGTTTTG TCTTATCTAAAGGAG TERM 1641 1314531 - 1314513 - T 100 -13.2 -4.7629 | opp_overlap 1314508 1314513 TTATTAATGTAAAAA CCGCTCAT TTG ATGAGCGG TTTTGTCTTATCTAA TERM 1642 1314513 - 1314531 + T 100 -13.2 -4.76963 | opp_overlap 1314513, overlap 1314508 TTATTAATGTAAAAA CCGCTCAT TTG ATGAGCGG TTTTGTCTTATCTAA SpyM3_1302 1315220 - 1314561 - | hypothetical protein TERM 1643 1314615 - 1314626 + g 73 -5.8 -4.56775 | GTCTATTGTATTTGA TGGG TAAT CCCA TTTTTCGACAGACAT SpyM3_1303 1315441 - 1315220 - | hypothetical protein SpyM3_1304 1316224 - 1315451 - | hypothetical protein TERM 1644 1315688 - 1315703 + g 70 -3.2 -4.93877 | overlap 1315689 TACATTTGAGATTGC TGCGAG ACCT TTCGCG TTTTGTTTAATAAAA TERM 1645 1316256 - 1316246 - R 74 -6.8 -4.27316 | TCCTTTAATTTAAAA TGGC TTT GCCA GCAAATGGCGCTGAG SpyM3_1305 1316837 - 1316235 - | hypothetical protein TERM 1646 1316560 - 1316527 - G 72 -8.9 -3.28924 | gap 1 TATTTTTGCCCAGAA CGTCTAACATCAAGCG TTA CGCT-GTCGTCAGACG GAAAGACATAGCCAT TERM 1647 1316800 - 1316765 - G 88 -7.8 -5.13016 | gap 1 AATTAAAACTAAAAA GTGACGATG-TATCA CCTTGTT TGATAACATCGCCAC CGTCAACCTGTTTAA SpyM3_1306 1317613 - 1316849 - | putative cell wall hydrolase, lysin - phage associated SpyM3_1307 1317947 - 1317615 - | putative holin - phage associated TERM 1648 1318144 - 1318156 + r 80 -4.8 -5.35721 | GATAGCACTTTCCAA GGCT TCCAT AGCC TTTTTATTATTGTCT SpyM3_1308 1318447 - 1318283 - | hypothetical protein SpyM3_1309 1318766 - 1318419 - | hypothetical protein SpyM3_1310 1320546 - 1318777 - | putative minor structural protein - phage associated SpyM3_1311 1324084 - 1320644 - | putative tail protein - phage associated SpyM3_1312 1325569 - 1324085 - | putative minor structural protein - phage associated SpyM3_1313 1327375 - 1325570 - | putative platlet-binding protein, minor tail fiber protein - phage associated TERM 1649 1325807 - 1325825 + g 73 -8.8 -3.63805 | CATGCTGACATCGTG CGGGACAA CGG TTGCCCCG TTTGGCATATGAACT TERM 1650 1327303 - 1327318 + g 70 -3.2 -4.87318 | TTTCAGCTTGTTCTT GCGCTT TTTC AAACGC TTTTTGCATTTTAGA SpyM3_1314 1327826 - 1327368 - | hypothetical protein TERM 1651 1327445 - 1327455 + gr 81 -5.4 -5.16071 | CCCAATATTTGCCTT CATC AGC GATG TTTTTATTAATGATT TERM 1652 1327739 - 1327708 - GR 100 -7.5 -5.54907 | gap 1, opp_overlap 1327708 1327713 TTGACAAAATAAAAA GCAAAGTCAATATC TTTGT GATACTGAC-TTGC TAATCTGTCATACTC SpyM3_1315 1328116 - 1327799 - | hypothetical protein SpyM3_1316 1328635 - 1328129 - | hypothetical protein SpyM3_1317 1329057 - 1328647 - | hypothetical protein SpyM3_1318 1329442 - 1329059 - | hypothetical protein SpyM3_1319 1329762 - 1329451 - | hypothetical protein SpyM3_1320 1330103 - 1329759 - | hypothetical protein SpyM3_1321 1330410 - 1330117 - | hypothetical protein SpyM3_1322 1331313 - 1330423 - | hypothetical protein SpyM3_1323 1331903 - 1331331 - | hypothetical protein TERM 1653 1332018 - 1332003 - R 82 -5.4 -5.25699 | opp_overlap 1332003 1332015 AGGACATAATAAAAA GCCGTA TTGC TACGAC TTTGATTTCTAAAGA SpyM3_1324 1332319 - 1332053 - | hypothetical protein SpyM3_1325 1333234 - 1332326 - | hypothetical protein SpyM3_1326 1334492 - 1333203 - | hypothetical protein TERM 1654 1333743 - 1333755 + gr 76 -7.7 -3.89956 | ATTGATAATGCGGGT GTCTC TAA GAGAC TTTAATGTCTCGTCG SpyM3_1327 1335349 - 1334528 - | putative terminase large subunit - phage associated TERM 1655 1334656 - 1334675 + g 86 -9.4 -4.13014 | TAGGGTTGCCATCTC TATCGACT TGAT AGTCGATA TTTTCAAACTCTCGA TERM 1656 1335492 - 1335526 + r 100 -10.9 -4.2528 | opp_overlap 1335492 1335495 CTAAAGACAATATAA TTACCTCTAGGGATG TACGT TATCCTTAGAGGTGA TTTGTTAAATTAAAA SpyM3_1328 1335826 - 1335536 - | putative terminase large subunit - phage associated SpyM3_1329 1336148 - 1335792 - | hypothetical protein TERM 1657 1335954 - 1336008 + gr 71 -6.5 -4.21141 | opp_overlap 1335953 1335954, overlap 1335962 GCTTAGATTAACAAG CGTTCCAATCGCAGAAAGAGCATAT TTGCC AAAAGCTTTTTCTGCGATTTCATCG TTTAATTTATTCCAA TERM 1658 1335962 - 1336000 + gr 87 -9.7 -3.90684 | opp_overlap 1335953 1335954, overlap 1335954 TAACAAGCGTTCCAA TCGCAGAAAGAGCATAT TTGCC AAAAGCTTTTTCTGCGA TTTCATCGTTTAATT TERM 1659 1336230 - 1336212 - R 100 -9.6 -5.63517 | opp_overlap 1336212 TTCGGAAATAAAAAA GTCACCAC AAT GTGATGAC TAATTGGTTAACCAT SpyM3_1330 1337216 - 1336782 - | hypothetical protein TERM 1660 1337269 - 1337287 + r 82 -4.5 -5.54907 | overlap 1337263 AAATTTAACCAAGGG GGCGTTC CGTAT GGACGTC TTTTTGTTTTGTGGA SpyM3_1331 1338170 - 1337667 - | hypothetical protein TERM 1661 1338215 - 1338201 - R 84 -6.4 -5.04987 | AATACTTTTAAAAAA CACTGC TCA GCAATG ACTTGATCACTGCCT SpyM3_1332 1338642 - 1338457 - | hypothetical protein SpyM3_1333 1339143 - 1338808 - | hypothetical protein SpyM3_1334 1339597 - 1339427 - | hypothetical protein SpyM3_1335 1340007 - 1339594 - | hypothetical protein SpyM3_1336 1340288 - 1340004 - | hypothetical protein TERM 1662 1340038 - 1340054 + g 70 -2.9 -5.09173 | opp_overlap 1340038 1340039, overlap 1340039 TTTTCGATTAACCAA TCAAGGT TCT GCCTTGC TTTTTTGAGGTCTTC TERM 1663 1340351 - 1340365 + r 81 -7.8 -4.41047 | ATTTGGCAATATTCT GCGTTC TAA GAGCGC TTTTAATTGCCAAGT SpyM3_1337 1340886 - 1340530 - | hypothetical protein SpyM3_1338 1341190 - 1340870 - | hypothetical protein SpyM3_1339 1342313 - 1341435 - | putative DNA primase - phage associated TERM 1664 1341607 - 1341617 + g 74 -4 -5.1361 | ATTGCTAGTTCTTTT TCAA AAT TTGA TTTTTTGGGCTTTGT TERM 1665 1342403 - 1342379 - R 74 -9.4 -3.11687 | gap 1 GTAACCACGACTCAA CGTCCCAACCA TCAA TGGTTGGGA-G AGGAGCGTTCGGAAT SpyM3_1340 1342915 - 1342361 - | putative DNA primase - phage associated SpyM3_1341 1343708 - 1342905 - | hypothetical protein TERM 1666 1343288 - 1343298 + g 71 -6.8 -4.03141 | opp_overlap 1343288 TATCCCACTCATACA TGCC TTT GGCA TTATTTGATGGTGGT SpyM3_1342 1344178 - 1343720 - | hypothetical protein SpyM3_1343 1345423 - 1344194 - | putative helicase - phage associated SpyM3_1344 1346205 - 1345525 - | hypothetical protein SpyM3_1345 1346688 - 1346206 - | hypothetical protein TERM 1667 1346484 - 1346499 + g 74 -6.2 -4.45259 | overlap 1346479 1346491 CTTGCGCTTGTTTTT GCTTTT CGTA AAAAGC TTCTTTTTCAGCTTT SpyM3_1346 1347231 - 1346917 - | hypothetical protein TERM 1668 1347097 - 1347122 + g 95 -13.5 -3.27177 | opp_overlap 1347100, overlap 1347100 AAAATGATCTGCTAG TAATTGCGCTT GATC AAGCGCAATTA TGTGTTCATTTTCCC TERM 1669 1347100 - 1347119 + g 83 -10.8 -3.75419 | opp_overlap 1347100, overlap 1347097 ATGATCTGCTAGTAA TTGCGCTT GATC AAGCGCAA TTATGTGTTCATTTT TERM 1670 1347119 - 1347100 - G 79 -10.8 -3.1505 | opp_overlap 1347100 1347097 ATGATCTGCTAGTAA TTGCGCTT GATC AAGCGCAA TTATGTGTTCATTTT SpyM3_1347 1347384 - 1347247 - | hypothetical protein SpyM3_1348 1347666 - 1347415 - | hypothetical protein TERM 1671 1347710 - 1347727 + r 100 -7.7 -6.20267 | overlap 1347726 AATTAATTTAGTTAG CGACTGT TCCA GCAGTCG TTTTTTTGTTTTTAA SpyM3_1349 1347979 - 1347761 - | putative Cro-like repressor - phage associated TERM 1672 1348098 - 1348082 - H 82 -3.1 -5.63103 | overlap 1348091 TTTTAATCAAAAAAA TAAAAAA AGT TTTTTCA AAAGAACGCTTGTGC SpyM3_1350 1348168 - 1348527 + | putative cI-like repressor - phage associated TERM 1673 1348651 - 1348633 - g 90 -8.9 -5.08601 | CTATGTTAATAAAAA CCTGTCT GAAAA AGACAGG AAAAAAGTAATCTTG TERM 1674 1348746 - 1348788 + G 79 -10.1 -3.57808 | opp_overlap 1348745, overlap 1348745 ATCAAGCTGACAGAT TTATGGTCAGAGAATTAAT AAAAG ATTATCTCTCTGACCATGA TATTTATAGCTTCGA SpyM3_1351 1348511 - 1348888 + | cI-like repressor SpyM3_1352 1348899 - 1349051 + | hypothetical protein SpyM3_1353 1349320 - 1349910 + | hypothetical protein TERM 1675 1349954 - 1349916 - f 82 -3.3 -5.71638 | gap 3, overlap 1349917 CAATAACTAAAAAAA GCCC-CACGCTTTCAAAC TTGGCG GTCTGA--GCGTGAGGGC TATCCAAAAACATAA TERM 1676 1350124 - 1350105 - g 76 -3.6 -5.31091 | opp_overlap 1350108, overlap 1350100 1350108 TACAATAAAACAAAA TACCCAAA CATA TTTTGGTA CATTACTTTGAAAGG TERM 1677 1350206 - 1350192 - g 72 -10 -2.72537 | overlap 1350191 1350189 GGAGAAAAAAAGGAG GCCACT GAA AGTGGC ATAAAAACGATACAA int315.5 1350084 - 1351250 + | putative phage integrase - phage associated recX 1351398 - 1352174 + | recombination regulator RecX SpyM3_1356 1352254 - 1352787 + | hypothetical protein TERM 1678 1352933 - 1352971 + F 80 -6.9 -4.59773 | gap 1, opp_overlap 1352938, overlap 1352934 1352938 TGTTTTTCGTTGTGG TA-AAAGTGGCGTCAATG TTAG TGTTGACGCCACTTGGTA TTTTTGAGCCTAGGA TERM 1679 1352934 - 1352969 + F 76 -7.6 -3.91506 | opp_overlap 1352938, overlap 1352933 1352938 GTTTTTCGTTGTGGT AAAAGTGGCGTCAATG TTAG TGTTGACGCCACTTGG TATTTTTGAGCCTAG TERM 1680 1352938 - 1352965 + F 95 -12.8 -3.60925 | opp_overlap 1352938, overlap 1352934 1352933 TTCGTTGTGGTAAAA GTGGCGTCAATG TTAG TGTTGACGCCAC TTGGTATTTTTGAGC TERM 1681 1352965 - 1352938 - f 93 -11.4 -4.07568 | opp_overlap 1352938 1352934 1352933 TTCGTTGTGGTAAAA GTGGCGTCAA TGTTAGTG TTGACGCCAC TTGGTATTTTTGAGC TERM 1682 1353030 - 1352996 - f 89 -8.6 -4.63527 | CTAGGATCTCAAAAA TAAGGCATGGAATTCC AAA GGAAGTCGCTGCCTTA AGCACTACCTAAGGA TERM 1683 1353072 - 1353059 - f 76 -3.9 -5.243 | GAAAGTATCAAAAAA TACTA AGTT TAGTA GCGAGGAAATCTCCG TERM 1684 1353298 - 1353288 - g 75 -5.4 -4.68724 | TCATTCAAGACAAAA CGAT ACC ATCG GCCTCAATCGTCTTC SpyM3_1357 1353157 - 1353435 + | hypothetical protein TERM 1685 1353851 - 1353822 - T 100 -13.9 -5.44198 | opp_overlap 1353822 AAGAAACAATAAAAA GCTTAAATTTGTT GTAT AACAAATTTAAGC TTTTTATCATTAAAA TERM 1686 1353822 - 1353851 + T 100 -13.9 -4.98255 | opp_overlap 1353822 AAGAAACAATAAAAA GCTTAAATTTGTT GTAT AACAAATTTAAGC TTTTTATCATTAAAA TERM 1687 1356700 - 1356733 + T 71 -8.9 -3.03412 | overlap 1356694 1356699 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 1688 1357392 - 1357411 + T 91 -12.2 -3.62096 | opp_overlap 1357391 1357390 CGCAGTCCTACAACC CCGAAGTG TAAA CACTTCGG TTTGCCCTCCTGCCG TERM 1689 1359676 - 1359690 + T 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC TERM 1690 1360182 - 1360195 + T 76 -3.9 -5.35815 | GCTATTATTTTTAGT TAGAA AAAA TTCTA TTTTTATTTGGTGTC TERM 1691 1360330 - 1360307 - T 95 -4.6 -6.20267 | opp_overlap 1360307 1360321 GGAAAAAGAAAAAAA CGCGCTTT ATATTCTG AAAACGCG CTTTTTCATATTTTT SpyM3_1358 1361109 - 1360561 - | putative ribosomal subunit interface protein TERM 1692 1361126 - 1361138 + r 81 -9.1 -3.72621 | AGATACCTCTTTCTC GCGCT TGA AGCGC TTACTTTATCTTTAA comFC 1361854 - 1361189 - | putative late competence protein TERM 1693 1361432 - 1361413 - GR 77 -6.4 -4.55887 | TTTCAAAAAGAGAAA GGTAGCTA ACAT TAGCTGCC TCAAGAATAGCGCTC SpyM3_1360 1362059 - 1361826 - | putative late competence protein required for DNA uptake SpyM3_1361 1362994 - 1362086 - | putative late competence protein required for DNA uptake TERM 1694 1362790 - 1362807 + g 76 -2 -5.46698 | TTCCTGCACCAGTTA CAGCAT GAACTA ATGTTG TTTTTTGATTTTGCA SpyM3_1362 1363190 - 1363837 + | hypothetical protein TERM 1695 1363854 - 1363888 + F 71 -5.2 -4.59376 | overlap 1363858 1363860 CATCAACAAAAGTGA TATGGCTTTATTATCA GAG TGATAGTAAATCTGTA TTTTACTTTAATAAT cysM 1363965 - 1364906 + | putative O-acetylserine lyase TERM 1696 1364900 - 1364951 + T 88 -6.9 -5.02074 | gap 1, opp_overlap 1364911 1364913, overlap 1364911 ACCAGTAATTAAGAC GAA-ATAAAAAAGGGTTTGGAACT ACTAA GGTTCCAGACTCTTTTTAGTGTTC TTTTTTAAAAACTGC TERM 1697 1364911 - 1364939 + T 90 -8.2 -4.94672 | opp_overlap 1364911 1364913, overlap 1364900 AGACGAAATAAAAAA GGGTTTGGAACT ACTAA GGTTCCAGACTC TTTTTAGTGTTCTTT TERM 1698 1364939 - 1364911 - T 82 -3.1 -5.69793 | opp_overlap 1364911 1364900, overlap 1364913 AGACGAAATAAAAAA GGGTTTGGAAC TACTAAG GTTCCAGACTC TTTTTAGTGTTCTTT SpyM3_1364 1365301 - 1364924 - | hypothetical protein SpyM3_1365 1366701 - 1365301 - | putative Cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type SpyM3_1366 1367379 - 1366738 - | putative two-component response regulator TERM 1699 1367246 - 1367226 - G 71 -4.8 -4.50058 | gap 1, overlap 1367220 1367229 GATCCATAACCAAAA CATCTGGCT TCAA AGCCA-ATG CCAAATCAACCCCTT SpyM3_1367 1368376 - 1367372 - | putative two-component sensor histidine kinase SpyM3_1368 1369065 - 1368373 - | hypothetical protein TERM 1700 1369183 - 1369141 - R 100 -10.1 -4.68994 | opp_overlap 1369141 1369144 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCT AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT TERM 1701 1369141 - 1369183 + r 78 -7.9 -4.21351 | opp_overlap 1369141, overlap 1369144 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCT AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT SpyM3_1369 1371086 - 1369188 - | putative serine/threonine kinase pppL 1371823 - 1371083 - | putative phosphoprotein phosphatase TERM 1702 1371617 - 1371639 + g 71 -4.8 -4.63542 | overlap 1371619 TAACCAATCTCTAAT CTGACTTAAC TCT GTGAAGTCTG TTTTTACCCATTCTC TERM 1703 1371833 - 1371845 + r 73 -7.7 -3.79251 | CTTCATACGTTTTTT CTGAC TCA GTCAG TTTCCTCCTAAAATA sunL 1373183 - 1371861 - | 16S rRNA m(5)C 967 methyltransferase TERM 1704 1372255 - 1372265 + g 70 -3.2 -4.84914 | TGACGATGAACCTCT CTGG CAT CTAG TTTTCTTGTCTCAAT fmt 1374108 - 1373173 - | methionyl-tRNA formyltransferase priA 1376554 - 1374170 - | primosome assembly protein PriA TERM 1705 1376183 - 1376171 - G 70 -3.4 -4.85782 | opp_overlap 1376171 TCCTTCAAAAAGAAA GTCT CTATC AGAC TTTTTTAGACCTGAC TERM 1706 1376171 - 1376183 + g 72 -3.4 -5.03314 | opp_overlap 1376171 TCCTTCAAAAAGAAA GTCT CTATC AGAC TTTTTTAGACCTGAC TERM 1707 1376601 - 1376623 + r 87 -6.4 -5.4111 | opp_overlap 1376601 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT TERM 1708 1376623 - 1376601 - R 95 -8.6 -5.32699 | opp_overlap 1376601 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT SpyM3_1374 1376936 - 1376619 - | DNA-directed RNA polymerase subunit omega gmk 1377587 - 1376952 - | guanylate kinase TERM 1709 1377250 - 1377227 - G 93 -6.8 -5.40072 | overlap 1377233 GTGGTGTTAAAAAAA CAAAAACACC ATCT GGTACTTTTG ACTTAACCTGAAGAG TERM 1710 1377244 - 1377233 - G 84 -2.2 -5.86609 | overlap 1377227 TTAAAAAAACAAAAA CACC ATCT GGTA CTTTTGACTTAACCT TERM 1711 1377672 - 1377697 + r 89 -13.5 -2.74012 | opp_overlap 1377672 1377678, overlap 1377678 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1712 1377697 - 1377672 - R 100 -13.5 -3.98484 | opp_overlap 1377672 1377678, overlap 1377678 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1713 1377678 - 1377691 + r 83 -6.7 -4.98255 | opp_overlap 1377672 1377678, overlap 1377672 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA TERM 1714 1377691 - 1377678 - R 85 -6.7 -5.38958 | opp_overlap 1377678 1377672, overlap 1377672 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA SpyM3_1376 1379304 - 1377697 - | hypothetical protein TERM 1715 1378814 - 1378836 + g 78 -2.8 -5.36965 | gap 1 TCTGCAATCGTCATC GCAGCAACT TTTTCC AGTT-CTGC TTTTTTCTCCTCTTC TERM 1716 1379460 - 1379447 - R 74 -2.4 -5.47218 | CCCTACTTAAAAAAA GACT GTAGCA AGTC GTCCATGATGTAGGC SpyM3_1377 1380330 - 1379434 - | LysR family transcriptional regulator TERM 1717 1380444 - 1380429 - H 77 -3.4 -5.54894 | opp_overlap 1380441 AATCTATCAAAAAAA TTTATA TGCT TATAAA AATTCTATATTTTTA atoB 1380529 - 1381716 + | putative acetyl-CoA:acetyltransferase TERM 1718 1382057 - 1382068 + G 73 -7.2 -4.13767 | ATTAGCTGAGCGCAT CCGC AGTG GCGG TTTTGGGCTAGGCGG atoD.1 1381815 - 1382390 + | putative Acetyl-CoA:acetoacetyl-CoA transferase A subunit atoA 1382392 - 1383051 + | putative Acetyl-CoA:acetoacetyl-CoA transferase b subunit SpyM3_1381 1383084 - 1383266 + | putative oxidoreductase TERM 1719 1383705 - 1383688 - g 75 -7.7 -4.09511 | overlap 1383691 AAGACCTTTCCAAAA CAAGAGG TATT CCCCTTG AAAATGTTCTTGAAG SpyM3_1382 1383339 - 1383863 + | 3-hydroxybutyrate dehydrogenase SpyM3_1383 1383934 - 1385265 + | putative permease luxS 1385339 - 1385821 + | S-ribosylhomocysteinase TERM 1720 1385928 - 1385951 + T 100 -8.2 -5.81622 | opp_overlap 1385928 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTGATTTTCT TERM 1721 1385951 - 1385928 - T 100 -10.4 -5.30155 | opp_overlap 1385928 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTGATTTTCT SpyM3_1385 1387435 - 1385966 - | hypothetical protein SpyM3_1386 1388603 - 1387449 - | putative N6-adenine-specific DNA methylase TERM 1722 1388647 - 1388632 - R 95 -9 -5.04868 | TTAAATCAAATAAAA GCTAGC AAGT GCTAGC TTAACCTATTATGCA SpyM3_1387 1389374 - 1389048 - | hypothetical protein SpyM3_1388 1390008 - 1389493 - | hypothetical protein TERM 1723 1389629 - 1389615 - G 75 -2.8 -5.24129 | opp_overlap 1389615 CTGTGTCATAAAAAA CATAAG CCC CTTCTG TCTTTTCTAATAAAA TERM 1724 1390344 - 1390312 - g 82 -7.8 -4.57569 | GCAGTCGGGCAAAAA TCGTTGAAGCATAC TTTAG ACAAGCTTCAACGA CTGACTATTGCGGCG recU 1390089 - 1390697 + | Holliday junction-specific endonuclease pbp1A 1390684 - 1392849 + | putative penicillin-binding protein 1A TERM 1725 1392981 - 1392932 - T 85 -10.3 -3.42354 | gap 1, opp_overlap 1392944, overlap 1392944 TACCTTAAGTGATAA TCTAAATAAAAAGCGAGTCCAC GTTCTGT GAGGACTCGCTTTTTATAT-GA CACAAATGACTTACC TERM 1726 1392944 - 1392970 + T 100 -10.8 -4.96848 | opp_overlap 1392944 1392932 TAATCTAAATAAAAA GCGAGTCCACGT TCT GTGAGGACTCGC TTTTTATATGACACA TERM 1727 1392970 - 1392944 - T 100 -9.4 -5.33026 | opp_overlap 1392944, overlap 1392932 TAATCTAAATAAAAA GCGAGTCCAC GTTCTGT GAGGACTCGC TTTTTATATGACACA TERM 1728 1393044 - 1393024 - T 89 -8.5 -4.29034 | AAACAAAAAACAGAA TTCTTTAAT CGT ATTAAAGAA AAGGTACAACGTTAA TERM 1729 1393190 - 1393166 - T 80 -2.8 -5.60864 | opp_overlap 1393166 TATACATGAAAAAAA CACGTTTCCA TATAC CGAAGACGTG TTTTTTCATATGTCA TERM 1730 1393166 - 1393190 + T 70 -2.1 -5.24989 | opp_overlap 1393166 TATACATGAAAAAAA CACGTTTCC ATATACC GAAGACGTG TTTTTTCATATGTCA pepC 1394653 - 1393316 - | putative aminopeptidase C TERM 1731 1394775 - 1394806 + r 93 -8.2 -5.57888 | opp_overlap 1394783, overlap 1394783 ATTTGATTTTCTTCA AGAAAAAAGTTAGG ATAA CCTAACTTTTTTTG TTTTCTTTTTTTACT TERM 1732 1394783 - 1394798 + r 100 -7.6 -6.17669 | opp_overlap 1394783, overlap 1394775 TTCTTCAAGAAAAAA GTTAGG ATAA CCTAAC TTTTTTTGTTTTCTT TERM 1733 1394798 - 1394783 - R 93 -7.6 -5.4505 | opp_overlap 1394775 1394783 TTCTTCAAGAAAAAA GTTAGG ATAA CCTAAC TTTTTTTGTTTTCTT nadE 1395662 - 1394838 - | NAD synthetase TERM 1734 1395062 - 1395052 - G 71 -6.8 -4.03413 | ACTTTTTCATACAAA GCAG CAT CTGC TCCTAAAACTTTCAA SpyM3_1393 1397119 - 1395659 - | nicotinate phosphoribosyltransferase TERM 1735 1396157 - 1396177 + g 76 -9.1 -3.72576 | AGCACCTAAGGCAGG CTGATCATA GGC TGTGATCAG TTTGGTCCCAACACC TERM 1736 1396461 - 1396445 - G 71 -5.1 -4.48713 | opp_overlap 1396445, overlap 1396447 GGTATCAACAAGAAA CACACAA TCT TTGTGGG TCTTAGCATAAGCCA aapA 1398668 - 1397289 - | putative amino acid permease nox.2 1399754 - 1398837 - | putative thioredoxin reductase SpyM3_1396 1400042 - 1399818 - | hypothetical protein TERM 1737 1400131 - 1400089 - R 70 -3.7 -5.00884 | gap 1, overlap 1400102 AGTTTTTCTAAAAAA CATAACAAGAAAAGCCCAGG AATA CCTAGACCTTT-TTATTATA ACAAAAGAATAACAT TERM 1738 1400119 - 1400102 - R 77 -5.5 -4.99312 | overlap 1400089 AACATAACAAGAAAA GCCCAGG AATA CCTAGAC CTTTTTATTATAACA SpyM3_1397 1400889 - 1400146 - | amino acid ABC transporter ATP-binding protein SpyM3_1398 1401692 - 1400889 - | putative amino acid ABC transproter (permease protein) SpyM3_1399 1403230 - 1401887 - | ATP-dependent RNA helicase TERM 1739 1402708 - 1402687 - G 75 -10.3 -3.21593 | overlap 1402685 TAGTTGCTGAGAACA CCAAAATCT GAAC AGATTTTGG AAACGAAGCTGCAAT mraY 1404398 - 1403388 - | phospho-N-acetylmuramoyl-pentapeptide-transferase pbp2X 1406568 - 1404400 - | putative penicillin binding protein 2X TERM 1740 1405556 - 1405574 + g 73 -7.4 -4.10672 | opp_overlap 1405556, overlap 1405549 TCTGCAATTGTTAAA CCATTAGC ATT GCTAAAGG TTTCGTTTGGGTTGA ftsL 1407012 - 1406659 - | putative cell division protein TERM 1741 1406904 - 1406924 + gr 75 -2.5 -5.30199 | opp_overlap 1406904, overlap 1406906 TAGCAGTATAAAAAG CCTTCTCAA TTC TAGAGAAAG TTTTTATTCGTTTTT mraW 1408000 - 1406987 - | S-adenosyl-methyltransferase MraW TERM 1742 1407845 - 1407822 - GR 89 -8.8 -4.27512 | overlap 1407819 TTGGACAACAAATAA GCTGAGTGGC CTGA GCCACCTAGC GTCGCATCAACATAA SpyM3_1404 1408188 - 1408024 - | hypothetical protein SpyM3_1405 1408490 - 1408290 - | hypothetical protein TERM 1743 1408358 - 1408340 - G 100 -2.4 -6.79027 | TCCAAAAAAAAAAAA CAAAATAG CTC CAATTTCG GACAATTTTCAATTC TERM 1744 1408414 - 1408424 + g 70 -5.4 -4.37863 | opp_overlap 1408414, overlap 1408411 AAAAGTTCTTCTAAA GCAA CCT TTGC TTCTTCTTTTTCTCT proA 1409721 - 1408471 - | gamma-glutamyl phosphate reductase proB 1410535 - 1409714 - | gamma-glutamyl kinase TERM 1745 1410707 - 1410720 + r 86 -5.3 -5.76237 | AGCATCTGATTTTGG GACTT GGAA AAGTC TTTTTTATTTGTCTA SpyM3_1408 1410907 - 1410725 - | hypothetical protein TERM 1746 1411546 - 1411525 - g 70 -9.5 -2.55487 | opp_overlap 1411524 1411525, overlap 1411513 1411524 1411523 1411519 AATGGGAAACAAATC CCGAACCAA GCGG TTGGTTCAG ATTTTATAATAGAGC sdn 1411146 - 1412126 + | streptodornase (Sdn) - phage associated TERM 1747 1412153 - 1412183 + T 84 -3.9 -5.64421 | opp_overlap 1412139 1412157, overlap 1412157 ATTTTTAGACACAAA AAAACCGCCCAGA AATAA TCTGAGCGGTTGG TTTTTTATTTCGGCT TERM 1748 1412157 - 1412179 + T 85 -9.1 -4.07772 | opp_overlap 1412157, overlap 1412153 TTAGACACAAAAAAA CCGCCCAGA AATAA TCTGAGCGG TTGGTTTTTTATTTC TERM 1749 1412179 - 1412157 - T 100 -11.3 -5.76633 | opp_overlap 1412157 1412153 TTAGACACAAAAAAA CCGCCCAGA AATAA TCTGAGCGG TTGGTTTTTTATTTC SpyM3_1410 1412815 - 1412441 - | hypothetical protein TERM 1750 1412516 - 1412527 + g 76 -4.4 -5.08169 | AATATCAAGCCCCTC TACG CATC CGTA TTTTTTAGAGTCTCT TERM 1751 1412804 - 1412780 - G 100 -9.4 -5.93252 | opp_overlap 1412783 TCTAAAAATAAAAAA TCCTACCAAC TGGGT ATTGGTAGGA CGCATTGCCAACGGG TERM 1752 1412990 - 1413011 + r 83 -7.2 -4.76963 | opp_overlap 1412990, overlap 1412985 TTTAAGACACAAAAA CCGCCCTC GATTAA GAGAGCGG TTTTGTCTTATCTAA TERM 1753 1413011 - 1412990 - R 100 -9.4 -5.10064 | opp_overlap 1412985 1412990 TTTAAGACACAAAAA CCGCCCTC GATTAA GAGAGCGG TTTTGTCTTATCTAA SpyM3_1411 1413811 - 1413077 - | putative cell wall hydrolase, lysin - phage associated TERM 1754 1413250 - 1413271 + g 84 -12.3 -2.94062 | opp_overlap 1413248 AGATACCTACAACCT CGCTGGCTA GACT TGGCCAGCG TCTGATATTGATCTC TERM 1755 1413469 - 1413482 + g 71 -5.3 -4.63932 | CATATAAGGCGTCTG CATTG CCAT CAATG TTTTGTTCAACAGTC SpyM3_1412 1414279 - 1414091 - | putative cell wall hydrolase, lysin - phage associated SpyM3_1413 1414622 - 1414395 - | putative holin - phage associated SpyM3_1414 1414891 - 1414619 - | hypothetical protein TERM 1756 1414657 - 1414670 + g 85 -6.7 -5.02715 | CTTTAAGTTCTCTTA CCTCA CGAT TGAGG TTTTTAATTTGCTCT SpyM3_1415 1415518 - 1414901 - | hypothetical protein SpyM3_1416 1415952 - 1415515 - | hypothetical protein TERM 1757 1415706 - 1415737 + g 77 -5.2 -4.93296 | gap 1, overlap 1415694 GTAGGCCGTTGAACT CGTCGAGTTTAGCGG GGT CTGCTA-GCTTGATG TTTTTGTGCTCATCA SpyM3_1417 1417979 - 1415964 - | hypothetical protein TERM 1758 1416472 - 1416448 - G 74 -6.5 -4.32034 | overlap 1416452 GCATTACTATTAAAA TCCATCTTAGC CGA GCTAAGATCAA TAAGCATAGCGCTAT TERM 1759 1416468 - 1416452 - G 71 -9.5 -2.78495 | overlap 1416448 TACTATTAAAATCCA TCTTAGC CGA GCTAAGA TCAATAAGCATAGCG TERM 1760 1416654 - 1416669 + g 73 -7.6 -3.96624 | GTCAGCTCTAATTTT GATAGC CTCT GCTATC TTTGTGGTAAAGGTG TERM 1761 1418000 - 1418027 + r 80 -5.1 -5.38047 | gap 1 CTCCTTAATCTGTTT TTTGTATGAGTT TTTTT AACTCAT-CAAA TTTTTTATCTACGTA hylP.6 1418996 - 1417989 - | putative hyaluronidase - phage associated SpyM3_1419 1420972 - 1418993 - | hypothetical protein TERM 1762 1419280 - 1419304 + g 74 -4.1 -5.09895 | overlap 1419282 TGATACCTTTGTTAT GCGGCTGTGTC AGC GTGACAGCCAC TTTTTTGAGTAGCTC SpyM3_1420 1421824 - 1420982 - | hypothetical protein TERM 1763 1421773 - 1421803 + g 81 -5.4 -5.1244 | opp_overlap 1421770 1421777, overlap 1421775 1421777 CAATATTATAAATAC CAAAGTCAGACAAC CTA GTTGCCTGACTCTC TTTTTCTATTAATAA TERM 1764 1421775 - 1421801 + g 77 -8 -4.18115 | opp_overlap 1421770 1421777, overlap 1421773 1421777 ATATTATAAATACCA AAGTCAGACAAC CTA GTTGCCTGACTC TCTTTTTCTATTAAT TERM 1765 1421799 - 1421777 - G 93 -12.8 -4.05181 | opp_overlap 1421775 1421773 1421777, overlap 1421770 ATTATAAATACCAAA GTCAGACAAC CTA GTTGCCTGAC TCTCTTTTTCTATTA TERM 1766 1421777 - 1421799 + g 83 -10.6 -3.66691 | opp_overlap 1421777 1421770, overlap 1421775 1421773 ATTATAAATACCAAA GTCAGACAAC CTA GTTGCCTGAC TCTCTTTTTCTATTA SpyM3_1421 1426218 - 1421836 - | putative tail protein - phage associated TERM 1767 1422207 - 1422227 + g 73 -10.5 -2.77678 | overlap 1422204 1422222 1422223 AAGCGCGTCTAATTG TTGCTGCTA CAT TAGCGGCAA TGCTGTTAGCTATTG TERM 1768 1424343 - 1424363 + g 70 -9.7 -2.73124 | overlap 1424342 CGCTAGCGGGGTTCA TCACTGCCC AAA GGGCAATGA CTTTAGGGGCTAAAG SpyM3_1422 1426466 - 1426233 - | hypothetical protein TERM 1769 1426302 - 1426313 + g 72 -4.4 -4.74132 | overlap 1426300 ATCACTATCGGCTTG GCTA CGGC TAGC TTTTTGATACGATCT SpyM3_1423 1426996 - 1426541 - | hypothetical protein SpyM3_1424 1427649 - 1427050 - | hypothetical protein SpyM3_1425 1428020 - 1427661 - | hypothetical protein TERM 1770 1427947 - 1427976 + g 75 -3 -5.32608 | gap 1, opp_overlap 1427947 TTAGGCAATTTAAAA TAGATTGGTATGT CTAAA AC-TCCCAATCTA TTTTTTACCTTTTTT SpyM3_1426 1428350 - 1428024 - | hypothetical protein SpyM3_1427 1428643 - 1428365 - | hypothetical protein SpyM3_1428 1429010 - 1428654 - | hypothetical protein TERM 1771 1428961 - 1428922 - G 78 -10.8 -2.99471 | gap 1, overlap 1428926 TTACTTTCATATATA GCAAGGGTGATGA-GCTCA TCT TGCGCACCATCACCCTTGG AAATACCTATAAAGA TERM 1772 1428957 - 1428926 - G 77 -10.2 -3.35197 | gap 1, overlap 1428922 TTTCATATATAGCAA GGGTGATGA-GCTCA TCT TGCGCACCATCACCC TTGGAAATACCTATA SpyM3_1429 1429909 - 1429022 - | hypothetical protein TERM 1773 1429480 - 1429501 + g 71 -3.7 -4.90918 | overlap 1429481 ATGCAGACAGCGCTT TTTGAAGGC CAAC GCCTTTAAC TTTTGTTGGTTTTGT SpyM3_1430 1430491 - 1429922 - | hypothetical protein TERM 1774 1430613 - 1430598 - R 82 -5.4 -5.24796 | opp_overlap 1430598 TGGACACAATAAAAA GCCGTA TTGC TACGAC TTTGGTTTAGATTTG SpyM3_1431 1430925 - 1430659 - | hypothetical protein SpyM3_1432 1431118 - 1430930 - | hypothetical protein TERM 1775 1431134 - 1431157 + r 70 -3.8 -4.91109 | gap 1 GAAGCAGTTTACTGT GGAGGCGG-TG GGT CATCCTCCTTC TTTTTCTAATACAGC SpyM3_1433 1432594 - 1431146 - | hypothetical protein TERM 1776 1431248 - 1431276 + gr 80 -4.6 -5.24796 | AATATGTTCTAATTG CCCCATTATC TCTTCAAAT GATAAAGGGG TTTTTGTTATATCAA SpyM3_1434 1434023 - 1432554 - | hypothetical protein TERM 1777 1433580 - 1433600 + gr 71 -5.3 -4.48175 | GATAACAAAAGTTTG CTCGGCCGG GAG CTGGTAGAG TTTTACTTCGGTTTT SpyM3_1435 1435379 - 1434102 - | putative terminase large subunit - phage associated SpyM3_1436 1435800 - 1435369 - | putative terminase small subunit - phage associated TERM 1778 1435531 - 1435546 + g 70 -3.2 -4.93661 | overlap 1435533 CTGACCAAACTCTCC AACGCT AATG AGCGTC TTTTCTTGTTGGTCT TERM 1779 1435669 - 1435686 + g 73 -9.9 -3.10732 | TTTAATGTCAGGTTT GGTCAAG TTTT CTTGACC TATTGACCTTGCTGT TERM 1780 1435852 - 1435830 - R 83 -6.3 -4.84274 | opp_overlap 1435830 CAAGCATAGCAAAAA GGCAAGACA CTATC TGCCTTACC TTCAAACTCATACTA SpyM3_1437 1436327 - 1435911 - | putative transcriptional activator - phage associated SpyM3_1438 1436732 - 1436460 - | hypothetical protein SpyM3_1439 1436895 - 1436725 - | hypothetical protein TERM 1781 1436911 - 1436935 + r 70 -7.1 -3.87851 | CTAGACCCCTAACTG CGCCTTAACTG CTT CAAGTAAGGCG TTCTGATTTTTTTCT SpyM3_1440 1438218 - 1436896 - | putative helicase - phage associated TERM 1782 1437453 - 1437465 + g 73 -7.7 -3.95621 | opp_overlap 1437453 1437452 ACTCCAACACCAAAT CAGCT TCA AGCTG TTTGTAGGCTTTCAT SpyM3_1441 1438490 - 1438215 - | hypothetical protein SpyM3_1442 1441240 - 1438856 - | putative DNA primase/helicase - phage associated TERM 1783 1439990 - 1440010 + g 74 -3.9 -5.06451 | overlap 1439991 CTTCAAATACTCCTC TGCGTTTGG CAA CCAGATGCC TTTTTTAGCGTCGTA polA.2 1443167 - 1441245 - | DNA polymerase A domain-containing protein TERM 1784 1443208 - 1443184 - R 76 -6.4 -4.56597 | gap 1, opp_overlap 1443185 1443188, overlap 1443185 CCTCTCCTTTAAAAA TGAGGAGCCTC TAAA GAGGC-CCTCT GCTATAAAATATCGT TERM 1785 1443185 - 1443207 + r 75 -9.9 -2.64243 | gap 1, opp_overlap 1443185 1443184, overlap 1443188 CTCTCCTTTAAAAAT GAGGAGCCTC TAAA GAGGC-CCTC TGCTATAAAATATCG TERM 1786 1443207 - 1443185 - R 81 -9.9 -3.33744 | gap 1, opp_overlap 1443185 1443188, overlap 1443184 CTCTCCTTTAAAAAT GAGGAGCCTC TAAA GAGGC-CCTC TGCTATAAAATATCG SpyM3_1444 1443773 - 1443210 - | hypothetical protein SpyM3_1445 1444944 - 1443787 - | hypothetical protein SpyM3_1446 1445243 - 1444944 - | hypothetical protein TERM 1787 1445066 - 1445077 + g 75 -5.8 -4.75472 | TCCCTTCTTCAACCT TGGC TTTA GCCA TTTTCTTAATATCAG TERM 1788 1445290 - 1445308 + r 100 -9.6 -5.15634 | GTGTGTATAATTGTT GACGGTTT CCT AAGCCGTC TTTTTTGATGCAATC SpyM3_1447 1445534 - 1445331 - | hypothetical protein SpyM3_1448 1445683 - 1445531 - | hypothetical protein SpyM3_1449 1446063 - 1445680 - | hypothetical protein SpyM3_1450 1446267 - 1446094 - | hypothetical protein SpyM3_1451 1446430 - 1446260 - | hypothetical protein SpyM3_1452 1446716 - 1446459 - | hypothetical protein TERM 1789 1446617 - 1446629 + g 77 -4.9 -4.84527 | TTTGATTGACCCACT GATTT GCT AAATC TTTTTCCTGTATGAG SpyM3_1453 1447034 - 1446804 - | hypothetical protein SpyM3_1454 1447246 - 1447055 - | putative transcriptional repressor - phage associated TERM 1790 1447573 - 1447599 + H 100 -10.2 -4.61873 | GAATAATTTCCGTAG CACCATTCAGAT AGC AGCTGGATGGTG TTTTAATTTGTAAGC TERM 1791 1447692 - 1447712 + H 70 -4.1 -4.66537 | opp_overlap 1447694, overlap 1447694 GGCATAAGAAAAACC TAGTTATAA CCT TTATAACTC TTTTATATTCCGCAG TERM 1792 1448160 - 1448134 - g 76 -2.2 -5.47821 | overlap 1448136 1448137 ATTGATCTAAAAAAA GATGCAGAAGAA ACT TTCTTCTTCGAC GGACACGAACTCAAC SpyM3_1455 1447861 - 1448235 + | putative repressor - phage associated TERM 1793 1448359 - 1448345 - g 78 -2.8 -5.45652 | overlap 1448351 ATGTTTAATAAAAAA CACAAC GTC ATTGCG ATTGACACTTATCTT SpyM3_1456 1448249 - 1448632 + | hypothetical protein SpyM3_1457 1448643 - 1449194 + | hypothetical protein TERM 1794 1449235 - 1449199 - f 95 -8.8 -5.63517 | gap 1 TCTTTAAATAAAAAA GCCCCACGCTCA-AC TTTGGTCG GTGCGAGCGTGAGGC AATATGCAATCAATA TERM 1795 1449412 - 1449394 - g 78 -3.9 -5.28755 | gap 1, overlap 1449397 AAATACACTAAAAAA GAT-GGCA CAAC TGCCTATC GCTTAAGAGCATATC TERM 1796 1450150 - 1450109 - g 100 -10.3 -5.79588 | gap 1, overlap 1450110 CCAAAACTAAAAAAA GCAGTCGCACTATCTCCATG GAT CA-GGAAACAATGCGACTGG CTAAGGAGTATATGA TERM 1797 1450149 - 1450110 - g 100 -13.8 -4.05313 | gap 1, overlap 1450109 CAAAACTAAAAAAAG CAGTCGCACTATCTCCATG GAT CA-GGAAACAATGCGACTG GCTAAGGAGTATATG TERM 1798 1450257 - 1450247 - g 73 -6.8 -4.18506 | GTAGGCTTAAAAGAA CCGT TGA ACGG CATCATCTAAAAAAA TERM 1799 1450291 - 1450274 - g 100 -4.9 -5.82316 | ATCATCTAAAAAAAA TAAACCC TCAT GGATTTA GACATACTCACGCAT int315.6 1449370 - 1450458 + | putative integrase - phage associated TERM 1800 1450574 - 1450559 - T 85 -6.8 -5.34555 | opp_overlap 1450559 TTATAGCATAAAAAA CAGCCC CAGA GGACTG TTTTTCCGAATAATG SpyM3_1459 1452229 - 1450601 - | ABC transporter permease TERM 1801 1452065 - 1452055 - G 76 -3.2 -5.28414 | CAATAAACATAAAAA GGTA AAT CACC AAAAACATGGCAATC SpyM3_1460 1452968 - 1452234 - | ABC transporter ATP-binding protein SpyM3_1461 1453268 - 1453044 - | hypothetical protein TERM 1802 1453420 - 1453445 + r 100 -13.5 -3.695 | opp_overlap 1453420 TTTATTTTAAAAAAA CAGAGTAAATC AAAT GATTTACTCTG TTTGGGATGTTTAAC TERM 1803 1453445 - 1453420 - R 100 -13.5 -5.44119 | opp_overlap 1453420 TTTATTTTAAAAAAA CAGAGTAAATC AAAT GATTTACTCTG TTTGGGATGTTTAAC tkt 1455446 - 1453461 - | transketolase tal 1456308 - 1455664 - | putative translaldolase TERM 1804 1456212 - 1456196 - G 71 -6.6 -4.10007 | ATAACTGTTTCAAAA TCACGT CCTTC ACGTGA GATAATGGTTGGATT SpyM3_1464 1457933 - 1456434 - | trans-acting positive regulator TERM 1805 1456634 - 1456608 - G 75 -9.5 -3.34398 | overlap 1456606 TTGTCTCGGTAAATA GACAGTCTGAT AGGTA ATCAGACAGTC ATAAACTTTTTGATG npx 1459362 - 1457923 - | NADH peroxidase TERM 1806 1458548 - 1458534 - G 70 -8.6 -3.27525 | overlap 1458546 TTGGCCTAAAGTTAA TGGCTA AAA TAGCCA AATCACCTTGGAAGG TERM 1807 1459372 - 1459335 - G 70 -3.5 -4.99645 | gap 1, opp_overlap 1459341, overlap 1459337 1459341 ATCCTATAAAGAAAA TGCAAAGGAGCTGGCCTA TGA TA-GCCAACTCCTTTAGT GATGGTTAGGACATG TERM 1808 1459370 - 1459337 - G 72 -10.5 -2.74499 | gap 1, opp_overlap 1459341, overlap 1459335 1459341 CCTATAAAGAAAATG CAAAGGAGCTGGCCTA TGA TA-GCCAACTCCTTTA GTGATGGTTAGGACA TERM 1809 1459366 - 1459341 - G 83 -9.1 -4.02396 | gap 1, opp_overlap 1459341, overlap 1459337 1459335 TAAAGAAAATGCAAA GGAGCTGGCCTA TGA TA-GCCAACTCC TTTAGTGATGGTTAG glpF.1 1460079 - 1459378 - | putative glycerol uptake facilitator glpO 1461919 - 1460081 - | putative alpha-glycerophosphate oxidase TERM 1810 1460134 - 1460146 + g 73 -7.7 -3.80174 | overlap 1460137 TGTCTGCAATCACGC GACGA AGA TCGTC TTCTTGTGCCACTCT glpK 1463461 - 1461935 - | glycerol kinase TERM 1811 1463710 - 1463669 - R 100 -13.2 -4.81644 | opp_overlap 1463679 CAAAGAAAATCAAAA GACCCAACAATCACTCTG CTAATC CAGAGTCATCATTGGGTC ATAAAGAGAACTAAG SpyM3_1469 1464212 - 1463820 - | hypothetical protein TERM 1812 1464308 - 1464338 + r 86 -10.6 -3.6943 | opp_overlap 1464310 1464316, overlap 1464310 1464316 ACAGTCATCACGATA AACAAAAAGCAGTT CAG AGCTGCTTTTTGTC TTATGATTTTGGGTC TERM 1813 1464336 - 1464310 - R 93 -11 -3.99592 | opp_overlap 1464308 1464310 1464316, overlap 1464316 AGTCATCACGATAAA CAAAAAGCAGTT CAG AGCTGCTTTTTG TCTTATGATTTTGGG TERM 1814 1464310 - 1464336 + r 93 -13.2 -3.41757 | opp_overlap 1464310 1464316, overlap 1464308 1464316 AGTCATCACGATAAA CAAAAAGCAGTT CAG AGCTGCTTTTTG TCTTATGATTTTGGG TERM 1815 1464330 - 1464316 - R 82 -4.2 -5.40464 | opp_overlap 1464310 1464308 1464316, overlap 1464310 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTGTCTTATGAT TERM 1816 1464316 - 1464330 + r 84 -6.4 -5.16133 | opp_overlap 1464316 1464310, overlap 1464310 1464308 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTGTCTTATGAT SpyM3_1470 1464596 - 1464339 - | hypothetical protein glyS 1466789 - 1464750 - | glycyl-tRNA synthetase subunit beta TERM 1817 1465506 - 1465524 + g 72 -9.6 -3.02511 | GTAGTGTTCACGGAT TGCTGTTG CCA CAGCAGCA TCTTCACCAGCTAGA TERM 1818 1467088 - 1467110 + r 73 -7.6 -3.74762 | overlap 1467089 CGGGAGTAACCTTGA CTCGGCGACC TTC GGTCGCCCAC TTCTTGCTCGCTCTT TERM 1819 1467089 - 1467109 + r 81 -11.1 -2.84134 | overlap 1467088 GGGAGTAACCTTGAC TCGGCGACC TTC GGTCGCCCA CTTCTTGCTCGCTCT glyQ 1468082 - 1467156 - | glycyl-tRNA synthetase subunit alpha TERM 1820 1468246 - 1468197 - R 100 -17.3 -5.1675 | CTAGGCACCAAAAAA CCGCATTTTGATGCTCCTAAATC ATAA GACCTAGGGGCGTCAAAACGCGG TTCCACCCTAATTTA SpyM3_1473 1468960 - 1468454 - | hypothetical protein TERM 1821 1468791 - 1468779 - G 75 -2.7 -5.19916 | overlap 1468780 AAAAGACCTAAAAAA CTGAT GCC ATCAA ACTTAATTTGTTTAA TERM 1822 1468899 - 1468909 + g 72 -3.2 -5.10877 | overlap 1468888 TCCTGTCCTCCTTGG GCTA ATA TGGC TTTTTCATTTGTTAT TERM 1823 1469087 - 1469110 + r 71 -6.8 -4.20981 | opp_overlap 1469087 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTAGTTTCTTAA TERM 1824 1469110 - 1469087 - R 83 -6.8 -5.00884 | opp_overlap 1469087 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTAGTTTCTTAA SpyM3_1474 1469961 - 1469122 - | reductase/dehydrogenase aldo/keto reductase family protein TERM 1825 1470078 - 1470031 - R 70 -2 -5.22481 | CATAAAGAAAGAAAA TACAAAAAGAATTGGCCTGCCA GACA TAGCTACCCCAATCCTTTTGTA TCTCTTAGGCATCAA nagA 1471231 - 1470083 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1826 1471312 - 1471343 + r 100 -9.6 -5.42259 | opp_overlap 1471296 1471314 1471319, overlap 1471314 TTTTTGGATTCAAAA AAGAAAACGTGGAT GATC ATTCACGTTTTCTC TTTTTTTAAAGCTGG TERM 1827 1471341 - 1471314 - R 100 -10 -5.08824 | opp_overlap 1471312 1471314, overlap 1471319 TTTGGATTCAAAAAA GAAAACGTGGAT GATC ATTCACGTTTTC TCTTTTTTTAAAGCT TERM 1828 1471314 - 1471341 + r 100 -12.2 -4.35085 | opp_overlap 1471314 1471319, overlap 1471312 TTTGGATTCAAAAAA GAAAACGTGGAT GATC ATTCACGTTTTC TCTTTTTTTAAAGCT TERM 1829 1471336 - 1471319 - R 82 -4.1 -5.43553 | opp_overlap 1471314 1471312, overlap 1471314 ATTCAAAAAAGAAAA CGTGGAT GATC ATTCACG TTTTCTCTTTTTTTA SpyM3_1476 1472980 - 1471349 - | putative Na/Pi cotransporter II-related protein TERM 1830 1472940 - 1472927 - G 72 -4.5 -4.70515 | GATACTGAAAAGAAA GAGAC CTAA GCCTC CAAAGAAATGAAATG SpyM3_1477 1473218 - 1473904 + | hypothetical protein SpyM3_1478 1474876 - 1474034 - | hypothetical protein TERM 1831 1474236 - 1474246 + g 100 -6.8 -5.75342 | opp_overlap 1474236, overlap 1474222 ATTTCTTCTATCAAA GCAG AAA CTGC TTTTTTTTGACCACG TERM 1832 1475468 - 1475449 - g 78 -7.2 -4.35518 | gap 1, opp_overlap 1475447 1475444 1475449 1475450, overlap 1475450 1475451 1475453 AATTTGATATTAAAA CTCAGGCTT ATC AAGCCTG-G CTCTATCTTTTTACT TERM 1833 1475450 - 1475468 + G 70 -9.6 -2.60234 | opp_overlap 1475449 1475450 1475451 1475453, overlap 1475449 1475447 1475444 ATTTGATATTAAAAC TCAGGCTT ATC AAGCCTGG CTCTATCTTTTTACT TERM 1834 1475467 - 1475451 - g 76 -10.9 -2.51871 | opp_overlap 1475450 1475449 1475447 1475444, overlap 1475449 1475450 1475453 TTTGATATTAAAACT CAGGCTT ATC AAGCCTG GCTCTATCTTTTTAC TERM 1835 1475508 - 1475496 - g 88 -7.7 -5.16572 | ACTGAAGCTAAAAAA GAAGC TCA GCTTC TTAAAATGATTTTCA SpyM3_1479 1475169 - 1475726 + | TetR family transcriptional regulator TERM 1836 1475711 - 1475767 + T 100 -16.4 -4.62069 | gap 2, opp_overlap 1475722 1475730, overlap 1475713 1475715 1475730 GGCTGCTATGGGCTT GCCT--CTATTAACGTAAAAAGGTTCCT TTT GGGAACCTTTTTACGTTAATAGTTAGTC TTTTTGAGCTGCAAG TERM 1837 1475713 - 1475765 + T 100 -17.6 -3.92746 | gap 2, opp_overlap 1475722 1475730, overlap 1475711 1475715 1475730 CTGCTATGGGCTTGC CT--CTATTAACGTAAAAAGGTTCCT TTT GGGAACCTTTTTACGTTAATAGTTAG TCTTTTTGAGCTGCA TERM 1838 1475715 - 1475761 + T 100 -26.4 -3.60925 | opp_overlap 1475722 1475730, overlap 1475713 1475711 1475730 GCTATGGGCTTGCCT CTATTAACGTAAAAAGGTTCCT TTT GGGAACCTTTTTACGTTAATAG TTAGTCTTTTTGAGC TERM 1839 1475754 - 1475722 - T 100 -18 -3.14132 | opp_overlap 1475715 1475713 1475711 1475730, overlap 1475730 GCTTGCCTCTATTAA CGTAAAAAGGTTCC TTTTG GGAACCTTTTTACG TTAATAGTTAGTCTT TERM 1840 1475746 - 1475730 - T 86 -8 -4.7629 | opp_overlap 1475730 1475715 1475713 1475711, overlap 1475722 CTATTAACGTAAAAA GGTTCC TTTTG GGAACC TTTTTACGTTAATAG TERM 1841 1475730 - 1475746 + T 93 -8.7 -4.7629 | opp_overlap 1475722 1475730, overlap 1475715 1475713 1475711 CTATTAACGTAAAAA GGTTCCT TTT GGGAACC TTTTTACGTTAATAG SpyM3_1480 1476586 - 1475762 - | hypothetical protein SpyM3_1481 1477193 - 1476588 - | hypothetical protein TERM 1842 1477325 - 1477297 - R 100 -11.2 -5.37345 | opp_overlap 1477301 TGTAAGGATAAAAAA GCAAGGATAAAA CCCAT TTTCATCCTTGC TACAAAAGATTCAAA lacD.1 1478379 - 1477402 - | tagatose 1,6-diphosphate aldolase lacC.1 1478879 - 1478529 - | putative tagatose-6-phosphate kinase lacB.1 1479404 - 1478889 - | galactose-6-phosphate isomerase subunit LacB TERM 1843 1479104 - 1479090 - G 77 -8.6 -3.79251 | opp_overlap 1479089 GATTTTACCACCAAA GCCAAT CAC ATTGGC ATTCAATTCTTCCTT lacA.1 1479844 - 1479419 - | galactose-6-phosphate isomerase subunit LacA TERM 1844 1479991 - 1479967 - R 89 -8.6 -4.63218 | gap 1, opp_overlap 1479966 TTTCTTTCAAGAAAA GCGCT-TGCGG GTAC CCACAGAGCGC CTTGCCTTACATGAG TERM 1845 1480061 - 1480073 + r 80 -4.9 -5.30155 | TTAAGCGGTTGTCTG CTATT CCC AATAG TTTTTTAGTTAGTCA SpyM3_1486 1481552 - 1480101 - | PTS system, galactose-specific IIC component SpyM3_1487 1481883 - 1481578 - | PTS system, galactose-specific IIB component SpyM3_1488 1482349 - 1481876 - | PTS system, galactose-specific IIA component TERM 1846 1482146 - 1482174 + g 73 -10.4 -2.88427 | CAAGCAATACTTGGT TTCTGTATGCGG AATAG CCGCATACAAAA TATCTGACCCATCTT TERM 1847 1483203 - 1483192 - g 72 -4.4 -4.67011 | overlap 1483195 AATTCTATTGAAAAA TACC TCTT GGTA GATAACCAAAAATTC lacR.1 1482586 - 1483356 + | putative phosphotransferase system repressor protein copZ 1483763 - 1483560 - | putative copper chaperone copA 1486008 - 1483777 - | putative copper-transporting ATPase TERM 1848 1485751 - 1485773 + g 77 -8.4 -3.80569 | overlap 1485737 1485753 AGACCAAATAACCTT TAGGTCTTCG TCA CGACGACCTG TTTGCATGTGTTTTG TERM 1849 1485753 - 1485771 + g 72 -8.8 -3.46904 | overlap 1485737 1485751 ACCAAATAACCTTTA GGTCTTCG TCA CGACGACC TGTTTGCATGTGTTT copY 1486442 - 1486008 - | putative negative regulator of copper transport operon SpyM3_1493 1486614 - 1487600 + | putative esterase TERM 1850 1487623 - 1487641 + T 100 -10.3 -5.42265 | AATAATTCCTACCTG CCACCAG TTAAT CTGGTGG TTTTTTGTAGTTTGC TERM 1851 1487679 - 1487703 + T 90 -11.5 -3.68529 | opp_overlap 1487679 AATAACAATTAAAAA GAGCCCTATCA TAA TGATAAGGCTC TTTGCGTCATAACAT TERM 1852 1487703 - 1487679 - T 100 -13.7 -5.03201 | opp_overlap 1487679 AATAACAATTAAAAA GAGCCCTATCA TAA TGATAAGGCTC TTTGCGTCATAACAT rbfA 1488086 - 1487736 - | ribosome-binding factor A TERM 1853 1487768 - 1487801 + g 79 -6.9 -4.56597 | gap 1, overlap 1487771 GATCTCGTAAGAGTT GATCAATTTTATTGCC ATA GGCGATGGAATTG-TC TTTTTCAAACACCAA TERM 1854 1487771 - 1487799 + g 83 -9.7 -3.90048 | overlap 1487768 CTCGTAAGAGTTGAT CAATTTTATTGCC ATA GGCGATGGAATTG TCTTTTTCAAACACC TERM 1855 1487998 - 1488014 + g 73 -2.1 -5.24531 | overlap 1487999 1488000 ATGGTTACTCCCTGA ACGCGTG GAT CACGCAC TTTTTTCTGAAGAAT TERM 1856 1488142 - 1488114 - R 100 -12.5 -4.13014 | opp_overlap 1488119, overlap 1488119 TCCACATTTTTAAAA CAAAAGCTAGGCT GAA AGCCCAGCTTATG ACATTGTTACCTGTT TERM 1857 1488137 - 1488119 - R 100 -11 -5.08255 | opp_overlap 1488119, overlap 1488114 ATTTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGTTAC TERM 1858 1488119 - 1488137 + r 75 -8.8 -3.39749 | opp_overlap 1488119 1488114 ATTTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGTTAC infB 1491096 - 1488292 - | translation initiation factor IF-2 TERM 1859 1489001 - 1489014 + g 84 -8.1 -4.72986 | GATCGCTCCTCACCA GCTGC ACGC GCAGC TTTTTCATCAGCGTA SpyM3_1496 1491475 - 1491173 - | hypothetical protein SpyM3_1497 1491764 - 1491468 - | hypothetical protein nusA 1492937 - 1491780 - | transcription elongation factor NusA SpyM3_1499 1493648 - 1493112 - | hypothetical protein TERM 1860 1493681 - 1493660 - R 93 -8.7 -4.68724 | opp_overlap 1493650 1493660 CCACTTAATACAAAA GTGGCGAGA CATA TCCCACCAC CTTTCTGTATTATTT trmB 1494542 - 1493907 - | tRNA (guanine-N(7))-methyltransferase TERM 1861 1494075 - 1494085 + g 73 -6.8 -4.15854 | GTACTCAAACAAGCC CCGA TTA TCGG TTTTAAAATGAATTT SpyM3_1501 1495333 - 1494542 - | hypothetical protein SpyM3_1502 1496431 - 1495397 - | putative ABC transporter (permease) SpyM3_1503 1497159 - 1496434 - | putative ABC transporter ATP-binding protein TERM 1862 1497384 - 1497413 + G 100 -14.5 -3.8505 | gap 1, opp_overlap 1497386 1497388 GTTCGTAACTTACTA GAGATGACT-GCTG AGA CAGCTAGTCATCTC TTTGCTCGTATTCCT TERM 1863 1497411 - 1497386 - g 80 -11.3 -2.82933 | gap 1, opp_overlap 1497384, overlap 1497388 TCGTAACTTACTAGA GATGACT-GCTG AGA CAGCTAGTCATC TCTTTGCTCGTATTC hit 1497231 - 1497650 + | putative cell-cycle regulation histidine triad (HIT) protein SpyM3_1505 1497647 - 1498003 + | hypothetical protein TERM 1864 1498064 - 1498039 - T 74 -9.1 -3.01497 | opp_overlap 1498039, overlap 1498041 1498043 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1865 1498039 - 1498064 + T 100 -9.1 -5.47159 | opp_overlap 1498039 1498041 1498043 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1866 1498103 - 1498126 + T 87 -11 -3.36273 | opp_overlap 1498103 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA TERM 1867 1498126 - 1498103 - T 100 -11 -5.19879 | opp_overlap 1498103 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA SpyM3_1506 1499397 - 1498114 - | putative transcription regulator SpyM3_1507 1499930 - 1499406 - | hypothetical protein SpyM3_1508 1500366 - 1499905 - | ATP/GTP hydrolase TERM 1868 1500418 - 1500391 - R 91 -2.8 -6.00086 | gap 1, overlap 1500395 ATATCAGAAAAAAAA CATACTTCCAAGC ACT ACCTAGAAG-ATG ACTCCAATAAGGTAT TERM 1869 1500487 - 1500448 - R 70 -3.9 -4.98531 | gap 1 TTCGTAAAGTAAAAA CGCTTCTTTATATTAA AGGTTAAAA TCAAT-TAAAGAAGCG GCAGTTAGTAGCAAA SpyM3_1509 1501980 - 1500520 - | hypothetical protein TERM 1870 1502063 - 1502100 + H 70 -8 -3.20063 | opp_overlap 1502093 TTGACACCTCATTAT TATTGTTATTGTTCGT ATTAAA ATGAACAATAACACTA TGTTACCATTTTTTT SpyM3_1510 1502244 - 1503056 + | hypothetical protein TERM 1871 1503092 - 1503069 - f 71 -6.8 -4.11623 | opp_overlap 1503069 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTTTTCTTCTGTCAA TERM 1872 1503069 - 1503092 + F 95 -9 -5.24796 | opp_overlap 1503069 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTTTTCTTCTGTCAA manL 1503408 - 1504400 + | putative mannose-specific phosphotransferase system component IIAB manM 1504489 - 1505298 + | PTS system, mannose-specific IIC component TERM 1873 1505690 - 1505700 + G 71 -6.8 -4.0098 | CGTCCTATCCTTGGG GCAC TTG GTGC TTCTTTGGCTTCAAC manN 1505315 - 1506226 + | PTS system, mannose-specific IID component TERM 1874 1506237 - 1506261 + F 100 -10.8 -5.43621 | opp_overlap 1506236 1506240 TGTAATCAACCAATG GAAGTCTGAG ATGAA CTCAGGCTTC TTTTTTATGCTTTAT SpyM3_1514 1506247 - 1506699 + | hypothetical protein SpyM3_1515 1507020 - 1508012 + | IS1548 transposase serS 1508417 - 1509694 + | seryl-tRNA synthetase TERM 1875 1509732 - 1509703 - T 81 -10.8 -2.82317 | opp_overlap 1509703, overlap 1509700 1509699 TAAATAATAAACTCA CCCCAGAGATCA TTAAAG TGATTTCTGGGG TTTACTATTTTAAAG TERM 1876 1509703 - 1509732 + T 100 -13.7 -4.07678 | opp_overlap 1509703 1509700 1509699 TAAATAATAAACTCA CCCCAGAGATCAT TAAA GTGATTTCTGGGG TTTACTATTTTAAAG accA 1510695 - 1509925 - | acetyl-CoA carboxylase subunit alpha TERM 1877 1509991 - 1510014 + g 88 -8.9 -4.51378 | opp_overlap 1509990 TTTCGCTTGTAAATT GCCCATTTC TTCGAT GAGATGGGC TTTTATCATCTCAAT TERM 1878 1510594 - 1510583 - G 73 -5.8 -4.63527 | CCATCATCTGAAAAA TGGC GATC GCCA TGCAGTTCCATAAAG accD 1511558 - 1510692 - | acetyl-CoA carboxylase subunit beta accC 1512931 - 1511567 - | acetyl-CoA carboxylase biotin carboxylase subunit fabZ 1513385 - 1512963 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 1879 1513079 - 1513103 + g 70 -2.8 -5.09426 | AGGTTGCTGTCATCA CAAGTTGATC ACCAG GGACGACTTG TTTTTTGAACTTCAC accB 1513882 - 1513382 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 1880 1513708 - 1513744 + g 95 -13.1 -3.59402 | opp_overlap 1513714, overlap 1513711 AAGCAGTTGGATTCG GAACAAGTTGTACCTGT GGT ACAGGCACAGCATGTTC TTGATTTGATGTCGA TERM 1881 1513711 - 1513741 + g 79 -9 -3.92143 | opp_overlap 1513714, overlap 1513708 CAGTTGGATTCGGAA CAAGTTGTACCTGT GGT ACAGGCACAGCATG TTCTTGATTTGATGT TERM 1882 1513738 - 1513714 - G 76 -9.3 -3.63515 | opp_overlap 1513711 1513708 TTGGATTCGGAACAA GTTGTACCTGT GGT ACAGGCACAGC ATGTTCTTGATTTGA fabF 1515116 - 1513884 - | 3-oxoacyl-(acyl carrier protein) synthase II fabG 1515865 - 1515131 - | 3-ketoacyl-(acyl-carrier-protein) reductase fabD 1516793 - 1515855 - | acyl-carrier-protein S-malonyltransferase fabK 1517732 - 1516818 - | putative trans-2-enoyl-ACP reductase II acpP 1518214 - 1517990 - | acyl carrier protein TERM 1883 1518267 - 1518255 - R 73 -7.7 -3.85817 | ATTTGTTTTTATAAA TGTGC TAG GCACA TGAATAACTAGATTT fabH 1519249 - 1518275 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1884 1519082 - 1519029 - G 77 -5 -5.00467 | gap 3, overlap 1519033 1519035 1519038 1519066 GCAACAATAATAAAA TCAA-TAGC--ATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGATCAGCAACCTGA ATAGCTAGGTCACTA TERM 1885 1519073 - 1519033 - G 83 -9.4 -3.87952 | gap 2, overlap 1519029 1519035 1519038 1519066 CAATAATAAAATCAA TAGCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C-A GCAACCTGAATAGCT TERM 1886 1519072 - 1519035 - G 100 -14.5 -3.4959 | gap 1, overlap 1519033 1519029 1519038 1519066 ATAATAAAATCAATA GCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C AGCAACCTGAATAGC TERM 1887 1519070 - 1519038 - G 100 -17.3 -2.86186 | overlap 1519035 1519033 1519029 1519066 ATAAAATCAATAGCA TCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGA TCAGCAACCTGAATA SpyM3_1528 1519684 - 1519250 - | MarR family transcriptional regulator phaB 1520552 - 1519761 - | enoyl-CoA hydratase TERM 1888 1520126 - 1520110 - G 84 -7.9 -4.68511 | overlap 1520111 GTCAATAGAAATAAA CCACCGG CAT CCGGTGC TAGTCCAACATTTAC TERM 1889 1520125 - 1520111 - G 85 -11.4 -3.40022 | overlap 1520110 TCAATAGAAATAAAC CACCGG CAT CCGGTG CTAGTCCAACATTTA TERM 1890 1520761 - 1520726 - R 100 -9.9 -5.47218 | opp_overlap 1520726 TTTGACGTAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAAATTATACG TTTGACATCTTTAAA TERM 1891 1520726 - 1520761 + r 82 -9.9 -3.695 | opp_overlap 1520726 TTTGACGTAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAAATTATACG TTTGACATCTTTAAA dnaJ 1521962 - 1520772 - | heat-shock (chaperone) protein TERM 1892 1520962 - 1520983 + g 70 -5.9 -4.33907 | gap 1, overlap 1520948 CGGAGTTTTGGTGCT CCTTT-GCCT TTG AGGCGGAAGG TTTTACCTGTTTGTG TERM 1893 1521567 - 1521553 - G 73 -8.6 -3.64866 | opp_overlap 1521547, overlap 1521541 ACACGATATTGCAAA TCGTCA CCT TGACGA GGGGCATTTGGGTTT TERM 1894 1522056 - 1522071 + r 73 -7.6 -3.82605 | CACGCTTTAGCCTGT GTTCGA ATAA TCGAAC TTGTATTCCTTTCTT TERM 1895 1522153 - 1522132 - R 93 -8.8 -4.67353 | opp_overlap 1522125 1522122 1522134 TTATTTAGCCAAAAA CAGAGGTT TGGTAC AACCTCTG AATTCGGATATTAAT dnaK 1524015 - 1522189 - | molecular chaperone DnaK grpE 1524767 - 1524195 - | putative Hsp-70 cofactor TERM 1896 1524679 - 1524689 + g 71 -6.8 -4.03888 | GTCTCTTCAGTTTCA GTGG CTT CCAC TTCTTCTTGTAAATC hrcA 1525804 - 1524770 - | heat-inducible transcription repressor TERM 1897 1525826 - 1525852 + r 78 -7.4 -4.14004 | ACCACTCCCTTTCGT TTAGCACTCTAT TTA GTAGACTGCTAA TTTATAATTCTATTA TERM 1898 1525946 - 1525900 - R 91 -4.6 -5.80364 | opp_overlap 1525910, overlap 1525910 ATGTCAAGAAAAAAA CTCAAAAAAATTAGCACTCTTT TAT AAAGAGTGCTAATTTCAGTCAT AGTTTGTTAAATCGT TERM 1899 1525936 - 1525910 - R 100 -15.4 -5.63857 | opp_overlap 1525910, overlap 1525900 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGTGCTAA TTTCAGTCATAGTTT TERM 1900 1525910 - 1525936 + r 100 -15.4 -3.70438 | opp_overlap 1525900 1525910 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGTGCTAA TTTCAGTCATAGTTT SpyM3_1534 1526508 - 1525939 - | N-acetylmuramoyl-L-alanine amidase TERM 1901 1525987 - 1525997 + g 70 -5.4 -4.45485 | GACCTGAATTAGTCG CCTA GCA TAGG TTTTATCAGTATAAT SpyM3_1535 1527248 - 1526505 - | putative D,D-carboxypeptidase SpyM3_1536 1527945 - 1527238 - | putative phosphoglycerate mutase TERM 1902 1528306 - 1528331 + r 100 -13.3 -5.54894 | opp_overlap 1528306 TTATGTTGCAAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT TERM 1903 1528331 - 1528306 - R 100 -13.3 -5.02074 | opp_overlap 1528306 TTATGTTGCAAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT SpyM3_1537 1528576 - 1528337 - | hypothetical protein SpyM3_1538 1529010 - 1528795 - | hypothetical protein TERM 1904 1528960 - 1528936 - G 81 -5.6 -5.05601 | CATGACATACAAAAA GGCAGCCTGT GAAAG ACCGACCGCC TTTTTTTCAGAGACA gatB 1530446 - 1529007 - | aspartyl/glutamyl-tRNA amidotransferase subunit B gatA 1531912 - 1530446 - | aspartyl/glutamyl-tRNA amidotransferase subunit A gatC 1532214 - 1531912 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 1905 1532428 - 1532393 - R 100 -20 -5.24989 | CCATACAGCAAAAAA CTTCCTGACTAAGGTC AGAA AACCTTAGTCAGGAAG TGTGACAAACTAAAC SpyM3_1542 1532738 - 1532445 - | hypothetical protein SpyM3_1543 1533778 - 1533224 - | putative pyrazinamidase/nicotinamidase TERM 1906 1533887 - 1533915 + r 83 -6.1 -5.19879 | opp_overlap 1533892, overlap 1533889 1533892 CTACCATTAACAGCA AAAAACATCTCTT TTC AAGAGATGTTGTC TTTTTCTATTTAAAA TERM 1907 1533889 - 1533913 + r 85 -8.7 -4.22132 | opp_overlap 1533892, overlap 1533887 1533892 ACCATTAACAGCAAA AAACATCTCTT TTC AAGAGATGTTG TCTTTTTCTATTTAA TERM 1908 1533910 - 1533892 - R 100 -10.4 -5.28683 | opp_overlap 1533889 1533887 1533892 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT TERM 1909 1533892 - 1533910 + r 100 -10.4 -4.17582 | opp_overlap 1533892, overlap 1533889 1533887 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT codY 1534707 - 1533925 - | transcriptional repressor CodY TERM 1910 1534130 - 1534140 + g 73 -6.8 -4.15066 | opp_overlap 1534129 1534139, overlap 1534139 AACTCTCCAAGAATT GCTG CAA CAGC TTTCATTTCTGAATA SpyM3_1545 1536139 - 1534925 - | aminotransferase AlaT TERM 1911 1535158 - 1535148 - G 71 -6.8 -3.99693 | opp_overlap 1535148, overlap 1535146 GGAAATAAATAAAGA CCTG CTT CAGG TTTAACTGCCGATAA TERM 1912 1536340 - 1536326 - H 84 -3.6 -5.68023 | opp_overlap 1536326 GTATAATGAAAAAAA GAATAA AAG CTATTC TTGTCAAACTGTTAA SpyM3_1546 1536370 - 1536822 + | hypothetical protein SpyM3_1547 1538333 - 1536945 - | hypothetical protein TERM 1913 1537775 - 1537795 + g 70 -3.3 -4.84642 | TTCTTGTAATTTTTA TATGAGGGA ACT TCTCTTGTA TTTTCTTAGTTTCAG TERM 1914 1538346 - 1538393 + H 100 -14.6 -3.57462 | opp_overlap 1538372 CAAAACCTTCTTTTG CCTCCTTTTATTTATGATAGAA TAGA TTATATCATAAATAAAAGGAAG TTTGACAATCAAATG asnB 1538406 - 1539371 + | L-asparaginase TERM 1915 1539383 - 1539424 + T 100 -16.2 -2.9587 | opp_overlap 1539390, overlap 1539390 ATAATCTAGCTTCCT GTAGAAATGTCCCACTAA AACATA TTAGTGGGACATTTCTAG TACTTTAAGCTTTAA TERM 1916 1539390 - 1539417 + T 100 -12.9 -4.04209 | opp_overlap 1539390, overlap 1539383 AGCTTCCTGTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA TERM 1917 1539417 - 1539390 - T 95 -12.9 -3.85817 | opp_overlap 1539390 1539383 AGCTTCCTGTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA SpyM3_1549 1540424 - 1539720 - | hypothetical protein SpyM3_1550 1541339 - 1540437 - | putative ABC transporter ATP-binding protein recG 1543647 - 1541632 - | putative ATP-dependent DNA helicase TERM 1918 1543819 - 1543785 - g 79 -11.5 -2.60508 | opp_overlap 1543787, overlap 1543784 1543783 GAGGTCTCAAAAATC CCGAGTGGCGTCAAT CTCGT ATTGACGCCACTCTT TTACCACAGCAAAAA TERM 1919 1543787 - 1543817 + G 100 -18.5 -4.07568 | opp_overlap 1543785 1543784 1543783 GGTCTCAAAAATCCC GAGTGGCGTCAAT CTCGT ATTGACGCCACTC TTTTACCACAGCAAA SpyM3_1552 1543740 - 1543940 + | hypothetical protein TERM 1920 1543941 - 1543963 + T 80 -9.3 -3.60072 | overlap 1543938 TTGTCTACGTTCTGA CTCTTGTAT CTATT ATACAAGAG TTCCTATTTATTTTC SpyM3_1553 1545476 - 1544022 - | putative ABC transporter ATP-binding protein TERM 1921 1544956 - 1544969 + gT 71 -6.7 -4.04587 | CCTTGCATAATGGCC GTTGC AATA GCAAC TCTTTGTTTTTGCCC SpyM3_1554 1546093 - 1545413 - | hypothetical protein SpyM3_1555 1546683 - 1546090 - | hypothetical protein cycC 1548350 - 1546680 - | ABC transporter ATP-binding protein cycD 1550103 - 1548343 - | ABC transporter ATP-binding protein fhuC.2 1550939 - 1550103 - | putative ferrichrome transport ATP-binding protein fhuG.2 1551958 - 1550936 - | putative ferrichrome ABC transporter (permease) TERM 1922 1551183 - 1551163 - G 87 -8.3 -4.49958 | overlap 1551180 AGCCTAGGAAAGAAA CCACTCCAA CGA TCGAAGTGG CTACCGAAGCCAATA fhuD.2 1553702 - 1551960 - | putative ferrichrome ABC transporter (ferrichrome-binding protein) TERM 1923 1553325 - 1553336 + g 72 -4.4 -4.70266 | TAGTGTTGTCCCATT GGTA TCAG TACC TTTTTGGGTGATATT SpyM3_1561 1557726 - 1553899 - | hypothetical protein TERM 1924 1557475 - 1557485 + g 85 -6.8 -5.14965 | ATCAAAGGTTCGCTC GCCT TCC AGGC TTTTTTCATAGACAT TERM 1925 1558114 - 1558088 - R 95 -3.7 -6.17268 | TCACAATAAAAAAAA GACAATAGTCC TAATC GTGCTATTGTC TCAAAATCATTTATT isp.2 1559682 - 1558201 - | immunogenic secreted protein precursor-like protein TERM 1926 1559332 - 1559357 + g 72 -8.3 -3.53298 | overlap 1559332 1559350 TGGTGATGGTTTGGG CTGATCAGTCG GTTT TGGCTGGTCAG TTGGTTTCGAATGGT TERM 1927 1559539 - 1559551 + g 82 -4.1 -5.4593 | AGTTTTATCTGATGT TGTAG GTG CTGCA TTTTTATTATTTTCC alr 1560899 - 1559799 - | alanine racemase acpS 1561252 - 1560896 - | 4'-phosphopantetheinyl transferase TERM 1928 1561335 - 1561299 - R 90 -11.7 -3.79071 | opp_overlap 1561305 1561308, overlap 1561301 GTTAGAAGATTTAAA CAGTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTCTA TATACCTAACTTTGT TERM 1929 1561333 - 1561301 - R 90 -12.1 -3.47542 | opp_overlap 1561305 1561308, overlap 1561299 TAGAAGATTTAAACA GTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTC TATATACCTAACTTT TERM 1930 1561305 - 1561329 + r 100 -15.9 -4.1399 | opp_overlap 1561301 1561299, overlap 1561308 AGATTTAAACAGTGA GAAGCTGAGAA TTA TTCTCAGCTTC TTTCTATATACCTAA TERM 1931 1561308 - 1561326 + r 100 -11.8 -4.18674 | opp_overlap 1561301 1561299, overlap 1561305 TTTAAACAGTGAGAA GCTGAGAA TTA TTCTCAGC TTCTTTCTATATACC secA 1563887 - 1561368 - | preprotein translocase subunit SecA TERM 1932 1563801 - 1563812 + g 86 -4.4 -5.51165 | CGCCATTTGGTCTGC GTAG GATT CTAC TTTTTTTGCAATTTT pmi 1564974 - 1564021 - | putative mannose-6-phosphate isomerase scrK 1565953 - 1565069 - | putative fructokinase TERM 1933 1566133 - 1566085 - R 86 -12.8 -2.77781 | opp_overlap 1566085 1566090 1566099, overlap 1566090 TGTCATCAAAACCTA TAAAAGACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTCTTTTG GTTAATCAATTCCAG TERM 1934 1566085 - 1566133 + r 100 -16.5 -2.52933 | opp_overlap 1566085 1566090, overlap 1566090 1566099 TGTCATCAAAACCTA TAAAAGACTAAAAATCTGGGA CTATTCA TCTCAGATTTTTAGTCTTTTG GTTAATCAATTCCAG TERM 1935 1566128 - 1566090 - R 100 -12.7 -4.54477 | opp_overlap 1566085 1566090 1566099, overlap 1566085 TCAAAACCTATAAAA GACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTC TTTTGGTTAATCAAT TERM 1936 1566090 - 1566128 + r 100 -14.2 -4.45945 | opp_overlap 1566090 1566085, overlap 1566085 1566099 TCAAAACCTATAAAA GACTAAAAATCTGGGA CTATTCA TCTCAGATTTTTAGTC TTTTGGTTAATCAAT ndoS 1569216 - 1566217 - | putative secreted endoglycosidase TERM 1937 1567281 - 1567295 + g 73 -7.8 -3.89085 | TTTTCCCATAGGTAT CTGGGT AAT GCCCAG TTGGTTTTTGCTTGT TERM 1938 1569446 - 1569413 - R 100 -18.4 -2.80816 | opp_overlap 1569413 1569421, overlap 1569421 CTGCCATTCATGACA GGACAAAAGAGCTG CTTAGT CAGCTCTTTTGTCC TTATTTGATAAGTGC TERM 1939 1569413 - 1569446 + r 100 -18.4 -4.015 | opp_overlap 1569413 1569421, overlap 1569421 CTGCCATTCATGACA GGACAAAAGAGCTG CTTAGT CAGCTCTTTTGTCC TTATTTGATAAGTGC TERM 1940 1569421 - 1569438 + r 80 -7 -4.64157 | opp_overlap 1569413 1569421, overlap 1569413 CATGACAGGACAAAA GAGCTG CTTAGT CAGCTC TTTTGTCCTTATTTG TERM 1941 1569438 - 1569421 - R 80 -7 -4.52047 | opp_overlap 1569421 1569413, overlap 1569413 CATGACAGGACAAAA GAGCTG CTTAGT CAGCTC TTTTGTCCTTATTTG scrA 1571330 - 1569447 - | PTS system, sucrose-specific IIABC component TERM 1942 1571463 - 1571482 + H 78 -2.2 -5.58522 | ATCACTAATATTTTT TATGTCAA GCGT TTAACATA TTTTTATTTTATATG scrB 1571572 - 1573011 + | putative sucrose-6-phosphate hydrolase scrR 1573136 - 1573981 + | putative sucrose operon repressor TERM 1943 1574009 - 1574067 + T 100 -21.5 -3.15699 | opp_overlap 1574015 1574021, overlap 1574015 1574021 CAATCACTAATTACT CTAAAAGACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTCTTTTAA TATTCGTACATAAAT TERM 1944 1574061 - 1574015 - T 100 -18.3 -4.17023 | opp_overlap 1574009 1574015 1574021, overlap 1574021 CTAATTACTCTAAAA GACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1945 1574015 - 1574061 + T 100 -20.5 -4.44797 | opp_overlap 1574015 1574021, overlap 1574009 1574021 CTAATTACTCTAAAA GACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1946 1574021 - 1574055 + T 100 -12.3 -4.49352 | opp_overlap 1574021 1574015, overlap 1574015 1574009 ACTCTAAAAGACAAA CAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTG TTTGTCTTTTAATAT TERM 1947 1574055 - 1574021 - T 100 -10.1 -4.45771 | opp_overlap 1574015 1574009 1574021, overlap 1574015 ACTCTAAAAGACAAA CAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTG TTTGTCTTTTAATAT TERM 1948 1574117 - 1574091 - T 85 -6.7 -5.24449 | gap 1, opp_overlap 1574091 CATAAATTGAAAAAA TCGGATACAATC CTAA GATTGC-TCCGA CTTATTATGATTTAT nusB 1574574 - 1574122 - | transcription antitermination protein NusB TERM 1949 1574529 - 1574519 - G 76 -6.8 -4.44046 | TCTATGTTAAATAAA GCCT GAA AGGC ACGTTCACGCAAATC SpyM3_1573 1574956 - 1574567 - | hypothetical protein efp 1575559 - 1575002 - | elongation factor P comEB 1576116 - 1575655 - | putative late competence protein required for DNA binding pepP 1577224 - 1576151 - | Xaa-Pro dipeptidase TERM 1950 1577334 - 1577317 - R 88 -7.7 -4.98616 | TTAAAAGATTAAAAA GGAGCTC AAAC GAACTCC TAATCCTATTGTTGT uvrA 1580168 - 1577340 - | excinuclease ABC subunit A SpyM3_1578 1580371 - 1581315 + | divalent cation transport protein magnesium transporter TERM 1951 1581704 - 1581686 - g 71 -3.8 -4.95896 | opp_overlap 1581688, overlap 1581688 AGAAACTGACAAAAA CACCAATC CTT GGTTGATG TGGCTAGATACCTCT SpyM3_1579 1581447 - 1582103 + | hypothetical protein TERM 1952 1582115 - 1582135 + T 80 -6.9 -4.6038 | ATAACAATCATTTCA TCCTTGC TGTCTAC GCAAGGA TTTTCGTTTACTATC TERM 1953 1582211 - 1582227 + T 79 -8.7 -3.71527 | opp_overlap 1582211, overlap 1582207 TAGTCAACTAAAAAA CAGTCCG AAA TGGACTG TTGGTTTATTAGTCT TERM 1954 1582227 - 1582211 - T 90 -8 -5.28481 | opp_overlap 1582207 1582211 TAGTCAACTAAAAAA CAGTCC GAAAT GGACTG TTGGTTTATTAGTCT rpsR 1582475 - 1582236 - | 30S ribosomal protein S18 ssb.2 1583131 - 1582640 - | single-strand DNA-binding protein rpsF 1583443 - 1583153 - | 30S ribosomal protein S6 SpyM3_1583 1583909 - 1583616 - | hypothetical protein TERM 1955 1584878 - 1584888 + G 70 -3.2 -4.84363 | AATACTAAAGGGAGA CTTC TAG GAGG TTTTTGGTCATTTCC mutY 1584077 - 1585231 + | putative A/G-specific adenine glycosylase TERM 1956 1585238 - 1585256 + F 82 -5.3 -5.29846 | opp_overlap 1585238 AATGCTTAATCACAA GTGAACT ATGAC GGTTCAC TTTTTGTTTACAATT SpyM3_1585 1585408 - 1585995 + | hypothetical protein TERM 1957 1586008 - 1586046 + T 100 -17 -3.09933 | opp_overlap 1586014 1586018, overlap 1586014 1586018 TGAAGTTAGTAGGTC ATAAAATAAAGCTCAGCG TGA CGCTGGGCTTTATTTTAG TTAACTCAATTCAGC TERM 1958 1586040 - 1586014 - T 100 -13.8 -4.40804 | opp_overlap 1586008 1586014 1586018, overlap 1586018 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1959 1586014 - 1586040 + T 100 -16 -4.43477 | opp_overlap 1586014 1586018, overlap 1586008 1586018 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1960 1586036 - 1586018 - T 100 -10.2 -4.77775 | opp_overlap 1586014 1586008 1586018, overlap 1586014 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC TERM 1961 1586018 - 1586036 + T 100 -12.4 -4.78077 | opp_overlap 1586018 1586014, overlap 1586014 1586008 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC trx.2 1586361 - 1586047 - | putative thioredoxin SpyM3_1587 1586942 - 1586442 - | putative PAP2 family protein mutS.1 1589402 - 1586946 - | putative DNA mismatch repair protein TERM 1962 1589411 - 1589382 - G 78 -7.3 -4.41348 | gap 1, opp_overlap 1589382 TTTCTCGTAAATAAA GAACCTAAAGGTGA AAC TCA-CTCCAGGTTC TTATATTAGTCACAA SpyM3_1589 1589979 - 1589434 - | hypothetical protein SpyM3_1590 1590290 - 1589982 - | hypothetical protein TERM 1963 1590252 - 1590266 + g 77 -8.6 -3.89881 | CAATGTTAATGTTTT TTCACC AAA GGTGAA TTTGTAGCGATTAAT TERM 1964 1590832 - 1590822 - g 70 -2.6 -5.06451 | GATGATTCTAAAAAA TTAT CGG ATAA AACCATTCAACAGAT SpyM3_1591 1590447 - 1591349 + | ribonuclease HIII TERM 1965 1591392 - 1591378 - g 73 -8.6 -3.76781 | opp_overlap 1591377 AAACAGTTTATTAAA GAATGG GGC CCATTC ACTCTCTTTTTAATT spi 1591360 - 1591953 + | putative signal peptidase I TERM 1966 1591960 - 1591975 + F 100 -10.4 -4.35874 | opp_overlap 1591960 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG TERM 1967 1591975 - 1591960 - f 100 -10.4 -5.37345 | opp_overlap 1591960 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG recD 1592011 - 1594464 + | putative exodeoxyribonuclease V alpha subunit TERM 1968 1594586 - 1594574 - g 74 -4.8 -4.7254 | ATTTCTTATGAAAAA GTGC GTCAG GCAC TCAAAACGTCTACTA TERM 1969 1594934 - 1594917 - g 70 -8.5 -3.35015 | overlap 1594920 TTAACCAGTTCACAA CAACCAT GTCA ATGGTTG GAACTATCCTTATCC SpyM3_1594 1594556 - 1595044 + | hypothetical protein TERM 1970 1595095 - 1595060 - T 100 -16.4 -3.43785 | opp_overlap 1595062, overlap 1595062 1595065 TATCACACGAAGTAA GATAAGCTGACTAGGA CTTT TCCTAGTCAGCTTATT TTTGCCTCTAGAAAT TERM 1971 1595062 - 1595093 + T 100 -19 -4.70659 | opp_overlap 1595060 1595062 1595065 TCACACGAAGTAAGA TAAGCTGACTAGGA CTTT TCCTAGTCAGCTTA TTTTTGCCTCTAGAA TERM 1972 1595093 - 1595062 - T 100 -19 -3.28487 | opp_overlap 1595062, overlap 1595060 1595065 TCACACGAAGTAAGA TAAGCTGACTAGGA CTTT TCCTAGTCAGCTTA TTTTTGCCTCTAGAA TERM 1973 1595090 - 1595065 - T 100 -16.3 -3.77119 | opp_overlap 1595062, overlap 1595062 1595060 CACGAAGTAAGATAA GCTGACTAGGA CTTT TCCTAGTCAGC TTATTTTTGCCTCTA TERM 1974 1595135 - 1595110 - T 70 -6.9 -3.85698 | TTTTGCCTCTAGAAA TAGGAAAGAGG AAAG CCTTCTTCCTA CGATAAATCCAAAGC dinP 1596230 - 1595133 - | DNA polymerase IV TERM 1975 1596805 - 1596779 - g 71 -6.5 -4.14511 | AACTTCATGCCAAAA GGTGGTATCCG TATGG CGGAAACGACC CTTAAAGAAAACGGC pfl 1596440 - 1598767 + | putative pyruvate formate-lyase TERM 1976 1598800 - 1598839 + T 100 -15.3 -5.1925 | opp_overlap 1598800 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC TTTTTTCACTTATAA TERM 1977 1598839 - 1598800 - T 100 -17.5 -5.3236 | opp_overlap 1598800 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC TTTTTTCACTTATAA SpyM3_1597 1599896 - 1598946 - | putative esterase cppA 1600633 - 1599881 - | putative putative C3-degrading proteinase TERM 1978 1600964 - 1600985 + G 80 -2.2 -5.67711 | overlap 1600961 CTTAGACTGATACAA GCTTTGCT AGTTTC GGCAATGC TTTTTATTTTCTTTA TERM 1979 1601269 - 1601281 + G 85 -9.1 -4.18702 | AACTTTACTTGCTAT GGCTG CAG CAGCC TTTATTGGAGCTTAT SpyM3_1599 1600895 - 1601827 + | hypothetical protein TERM 1980 1601833 - 1601860 + T 75 -4.9 -4.98616 | opp_overlap 1601833 AAATAGATAAGATAA CGTTTCTGG GAATCACTAA CCAGAGACG TTTTTAATATTTTAC TERM 1981 1602132 - 1602108 - T 79 -4.3 -5.38951 | opp_overlap 1602108 AACTCATATAAAAAA GACAAGTTC CTTAAGC GAGCTTGTC TTGAGTCTAAAAGAA glpF.2 1603110 - 1602163 - | putative glycerol uptake facilitator protein TERM 1982 1603179 - 1603139 - R 73 -4.1 -4.97957 | gap 1, opp_overlap 1603139 1603141 1603143 CACACAATAATAAAA GCGGTAAAGAAAAGGACC ATAAAA GG-CCTTATCTTTATCAC TTTATTTCATAGTAT norA 1604709 - 1603513 - | putative antibiotic resistance protein TERM 1983 1603890 - 1603863 - G 76 -2.1 -5.42259 | gap 1, opp_overlap 1603870, overlap 1603868 1603869 CCATTGCTAAAAAAA GATAACTTGGGT ACAAG ACCCAT-TTATC GCCTTTAGCATCCAT TERM 1984 1604687 - 1604697 + g 74 -4 -5.13741 | opp_overlap 1604684, overlap 1604684 ATGGCCACAAAATGT TTGT TAA ACAA TTTTTCTTCCATTGA SpyM3_1602 1604815 - 1605534 + | putative transcriptional regulatory protein TERM 1985 1606301 - 1606265 - g 87 -5.1 -5.41143 | opp_overlap 1606274, overlap 1606274 1606277 TAGTCGTTAAAAAAA GGAGACAAATCACTGTC GAA GACAGGGATTTTATTCC TCTTGAGACACAGCC TERM 1986 1606292 - 1606274 - g 76 -7.4 -4.24562 | opp_overlap 1606274, overlap 1606265 1606277 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1987 1606274 - 1606292 + G 83 -7.4 -4.78753 | opp_overlap 1606274 1606265 1606277 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1988 1606559 - 1606547 - g 75 -5.5 -4.67353 | CCAGCCACTCAAAAA CCCAC CAA GTGAG AGCTGATTGGGCAAA pepXP 1605556 - 1607838 + | x-prolyl-dipeptidyl aminopeptidase TERM 1989 1607876 - 1607843 - T 81 -7.6 -4.41302 | opp_overlap 1607848, overlap 1607848 CATCAAATTAACAAA GAAAAGTGCTTAGC AATATA ACTAAGCACTTTTT TGTTAATTGGTCTTA TERM 1990 1607871 - 1607848 - T 88 -7.5 -5.13527 | opp_overlap 1607848, overlap 1607843 AATTAACAAAGAAAA GTGCTTAGC AATATA ACTAAGCAC TTTTTTGTTAATTGG TERM 1991 1607848 - 1607871 + T 87 -6.8 -5.5604 | opp_overlap 1607848 1607843 AATTAACAAAGAAAA GTGCTTAG CAATATAA CTAAGCAC TTTTTTGTTAATTGG SpyM3_1604 1608139 - 1607918 - | hypothetical protein TERM 1992 1607979 - 1607953 - G 76 -2.2 -5.42259 | opp_overlap 1607956, overlap 1607955 1607956 CTATTCCTAAAAAAA TATCATCAACGG AAA CCGCTAATGCTT GTGCAATACCTTTTA SpyM3_1605 1608309 - 1608683 + | putative repressor SpyM3_1606 1608876 - 1609175 + | hypothetical protein TERM 1993 1609187 - 1609212 + T 100 -12.7 -5.66684 | opp_overlap 1609187 CTAAAAAAACAAAAA CTAGCTTGAGA AGGA TCTCAGGCTAG TTTTTTTATGAGTTA TERM 1994 1609212 - 1609187 - T 100 -10.5 -5.86609 | opp_overlap 1609187 CTAAAAAAACAAAAA CTAGCTTGAGA AGGA TCTCAGGCTAG TTTTTTTATGAGTTA SpyM3_1607 1609969 - 1609232 - | putative transcriptional activator regulator protein dnaQ 1610748 - 1610122 - | DNA polymerase III subunit epsilon TERM 1995 1610740 - 1610726 - G 86 -7.8 -5.00616 | opp_overlap 1610726 TTTTCTTCCAAAAAA GACCCT GAT AGGGCC TTCGTCATTTTTTGT SpyM3_1609 1611288 - 1610758 - | hypothetical protein TERM 1996 1612450 - 1612422 - g 76 -4.6 -5.093 | TCCAAAACAAGAAAA GGAATTGCTTGA TAAAC TCAAACACCTCC AGATACCCATTACAG SpyM3_1610 1611538 - 1612662 + | hypothetical protein TERM 1997 1612695 - 1612671 - T 88 -7.2 -5.1287 | opp_overlap 1612671 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT TERM 1998 1612671 - 1612695 + T 100 -9.4 -4.70266 | opp_overlap 1612671 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT deoC 1613428 - 1612757 - | putative deoxyribose-phosphate aldolase nupC 1614660 - 1613458 - | putative nucleoside transporter udp 1615460 - 1614681 - | putative uridine phosphorylase SpyM3_1614 1615701 - 1616459 + | GntR family transcriptional regulator TERM 1999 1616488 - 1616508 + F 74 -3.3 -5.30189 | gap 1 GTTATTAATACCTGA CTCCCACA CTTAGA TG-GGGAG TTTTTTGATATTATG TERM 2000 1616624 - 1616592 - f 85 -12.2 -2.98729 | overlap 1616601 TATAATGATTATATA TCCACTTAACCAGT TAAAT ACCAGTTAAGTGGA TTCAGAGCGCTGATA rpsN 1616679 - 1616948 + | 30S ribosomal protein S14 TERM 2001 1617036 - 1617063 + T 100 -14.3 -5.00616 | opp_overlap 1617039 TACTTATCATCATGA CAACCCGGTAT GCCAAG ATACCGGGTTG TTTTTTCAAAGGGAG TERM 2002 1617060 - 1617039 - T 85 -10.2 -3.45023 | opp_overlap 1617036 TTATCATCATGACAA CCCGGTAT GCCAAG ATACCGGG TTGTTTTTTCAAAGG gcp 1618147 - 1617119 - | O-sialoglycoprotein endopeptidase SpyM3_1617 1618592 - 1618137 - | putative ribosomal-protein-alanine acetyltransferase SpyM3_1618 1619262 - 1618564 - | putative glycoprotein endopeptidase SpyM3_1619 1619546 - 1619776 + | hypothetical protein TERM 2003 1619897 - 1619940 + G 79 -9.8 -3.63341 | gap 1, opp_overlap 1619907, overlap 1619907 CATTATCGTTGATGC CGGTATCAAATTCCCAGAAGA TGA TCTTTTGGGAA-TTGATTACG TTATTCCAGACTATT TERM 2004 1619907 - 1619931 + G 87 -12.3 -3.43049 | opp_overlap 1619907, overlap 1619897 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 2005 1619931 - 1619907 - g 80 -10.1 -3.72893 | opp_overlap 1619907 1619897 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 2006 1621353 - 1621340 - g 79 -6.7 -4.61482 | TGCTTTAAAAAATAA GGATG CTAG CATCC AATCAGTTAACGGTG SpyM3_1620 1619778 - 1621460 + | Zn-dependent hydrolase TERM 2007 1621584 - 1621530 - T 75 -8.8 -3.50393 | opp_overlap 1621538 1621545 1621577, overlap 1621531 1621533 1621545 TTCTAGTTCAGATAA TTATCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTCTAT AATGGAAAATCAATT TERM 2008 1621583 - 1621531 - T 86 -12.3 -2.70022 | opp_overlap 1621538 1621545 1621577, overlap 1621530 1621533 1621545 TCTAGTTCAGATAAT TATCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTCTA TAATGGAAAATCAAT TERM 2009 1621581 - 1621533 - T 79 -10.5 -2.89298 | opp_overlap 1621538 1621545 1621577, overlap 1621531 1621530 1621545 TAGTTCAGATAATTA TCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTC TATAATGGAAAATCA TERM 2010 1621538 - 1621576 + T 100 -12 -4.57353 | opp_overlap 1621533 1621531 1621530 1621545, overlap 1621545 CAGATAATTATCAAA CTAAAAACCAGTCC TCATAGAACAT GGACTGGTTTTTAG TTTTCTATAATGGAA TERM 2011 1621545 - 1621569 + T 76 -4.3 -5.15526 | opp_overlap 1621545 1621533 1621531 1621530, overlap 1621538 TTATCAAACTAAAAA CCAGTCC TCATAGAACAT GGACTGG TTTTTAGTTTTCTAT TERM 2012 1621569 - 1621545 - T 88 -7.1 -5.01811 | opp_overlap 1621538 1621545, overlap 1621533 1621531 1621530 TTATCAAACTAAAAA CCAGTCCTCAT AGA ACATGGACTGG TTTTTAGTTTTCTAT TERM 2013 1621678 - 1621656 - T 100 -10.6 -4.54449 | ATAGCTCATACAAAA GACCCACTCA ACT TGAGCAGGTC CTGATAAGTCTAATA glnA 1623034 - 1621688 - | putative glutamine synthetase TERM 2014 1622888 - 1622909 + g 80 -10.3 -3.63298 | opp_overlap 1622881 1622885, overlap 1622886 ATCAAACATAACCTT GTTAGACAA TACT TTGTCTAAC TGTTCTTTAGTTGCA glnR 1623443 - 1623072 - | putative transcriptional repressor of glutamine synthetase SpyM3_1623 1624061 - 1623510 - | hypothetical protein TERM 2015 1623688 - 1623674 - G 82 -7.8 -4.56133 | GTGTAATAATCAAAA GAGCAG CCA CTGCCC CAATAATACCTGATT TERM 2016 1624299 - 1624282 - R 93 -7.7 -5.65513 | opp_overlap 1624281 1624282 GATCAACTAAAAAAA GACATGC ATCA GCATGCC CTTTACTATATATTA pgk 1625520 - 1624324 - | phosphoglycerate kinase lppC 1626567 - 1625713 - | putative acid phosphatase SpyM3_1626 1627687 - 1626797 - | hypothetical protein TERM 2017 1627713 - 1627733 + r 72 -8.4 -3.34232 | opp_overlap 1627716, overlap 1627707 CCTTGTCATGTCTTA GAACTGAA TCGTT TTCAGTTC TTGACTTATTGTTAT TERM 2018 1627807 - 1627822 + r 71 -3.2 -5.03145 | TAACCATTAGCTTTG TGATGG ATTA CCCTCA TTTTTTAGGGGCTTA TERM 2019 1627902 - 1627881 - R 88 -7.3 -5.09685 | opp_overlap 1627881 CAATATAGACAAAAA GAGTCAGAC CTTT GCCTAACTC CTCTTTTTTTATTGT SpyM3_1627 1629555 - 1627924 - | hypothetical protein asp 1629953 - 1629588 - | putative alkaline-shock protein TERM 2020 1630108 - 1630074 - R 71 -8.9 -3.08696 | gap 1, opp_overlap 1630073 1630083 1630106, overlap 1630073 ATGGATAGAAATAAG CTAATAAAAA-AAGCC CTAA GGCTTATTTCTATTAG ATGCGTTCTACTTTA rpmB 1630293 - 1630105 - | 50S ribosomal protein L28 TERM 2021 1630651 - 1630638 - R 90 -8.1 -5.09225 | opp_overlap 1630638 1630639, overlap 1630639 ATTGTATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTACTTAAT TERM 2022 1630638 - 1630651 + r 73 -8.1 -3.64162 | opp_overlap 1630638 1630639, overlap 1630639 ATTGTATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTACTTAAT fba 1631556 - 1630675 - | fructose-bisphosphate aldolase TERM 2023 1631755 - 1631733 - R 100 -9.2 -5.04175 | opp_overlap 1631733 TTAACCAGACAAAAA GAGACGAATC AAT GATTCACCTC TTACATTATGCGGAG SpyM3_1631 1632829 - 1631903 - | hypothetical protein TERM 2024 1632799 - 1632787 - G 71 -6.3 -4.30809 | TAAGAGTTATGAAAA GGAAT AGA ATTCC TAAATACTTTGCTAT pyrG 1634601 - 1632997 - | CTP synthetase TERM 2025 1634760 - 1634736 - R 76 -2.8 -5.54907 | overlap 1634738 TCTAGAAAACAAAAA TAGCCCCCTA TTAAC TAGAGAGCTT TTGCCTGACCTCTTA rpoE 1635433 - 1634858 - | DNA-directed RNA polymerase subunit delta TERM 2026 1635623 - 1635597 - R 93 -8.1 -5.69262 | opp_overlap 1635597 TTAGAAAAAGAAAAA CCAGACTAGAA AGACG TTCTAATCCGG CTTGTACGTTTTGTT tig 1636933 - 1635650 - | trigger factor SpyM3_1635 1637254 - 1638099 + | hypothetical protein TERM 2027 1638162 - 1638115 - T 100 -10.3 -5.11033 | gap 1, opp_overlap 1638115 1638116, overlap 1638116 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 2028 1638115 - 1638162 + T 87 -10.3 -3.71649 | gap 1, opp_overlap 1638115 1638116, overlap 1638116 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 2029 1638116 - 1638161 + T 83 -11.6 -2.82668 | gap 1, opp_overlap 1638116 1638115, overlap 1638115 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG TERM 2030 1638161 - 1638116 - T 100 -13.8 -3.65535 | gap 1, opp_overlap 1638115 1638116, overlap 1638115 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG SpyM3_1636 1638724 - 1638164 - | hypothetical protein SpyM3_1637 1639130 - 1638738 - | hypothetical protein thiD 1639962 - 1639198 - | phosphomethylpyrimidine kinase truA 1640701 - 1639952 - | tRNA pseudouridine synthase A comX.2 1641373 - 1640888 - | putative competence protein ComX1 TERM 2031 1641429 - 1641452 + r 100 -14 -5.68023 | opp_overlap 1641429 AGAACCACAAAAAAA CAACAGGACA TTAG TGTCCTGTTG TTTTTTTCATTATGC TERM 2032 1641452 - 1641429 - R 100 -14 -5.73339 | opp_overlap 1641429 AGAACCACAAAAAAA CAACAGGACA TTAG TGTCCTGTTG TTTTTTTCATTATGC TERM 2033 1641609 - 1641592 - R 89 -6.3 -5.61824 | opp_overlap 1641592, overlap 1641583 TAAAATGCAAAAAAA GATAGGA CGCT TCCTACC TCTCTCTACTCCGCC TERM 2034 1643821 - 1643854 + r 71 -8.9 -3.03412 | overlap 1643815 1643820 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 2035 1644513 - 1644532 + r 91 -12.2 -3.62096 | opp_overlap 1644512 1644511 CGCAGTCCTACAACC CCGAAGTG TAAA CACTTCGG TTTGCCCTCCTGCCG TERM 2036 1646797 - 1646811 + r 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC SpyM3_1641 1648232 - 1647159 - | putative glycerate kinase TERM 2037 1647301 - 1647281 - G 70 -2.5 -5.08824 | overlap 1647257 GTTGTATTGAAAAAA CAGCCAAAA AGT CTTCTGCTG CTAGTCCTGTCTCAA TERM 2038 1647583 - 1647599 + g 85 -6.7 -5.01732 | opp_overlap 1647582, overlap 1647586 1647587 GTCTGTAAATCAATG GTTTTTT GGT AAAAAAC TTTTTTAGCAAAGTT TERM 2039 1649274 - 1649248 - g 84 -6.6 -4.94222 | opp_overlap 1649248, overlap 1649242 AACAAGCCACAAAAA GATCTCTTTGCC TTT GCCAAAGAAACC TTGTCTATCCCTCGT TERM 2040 1650698 - 1650722 + G 74 -9.3 -3.61398 | GCCTCTACTCTAATG GGGGTGAAAAC TAC GTTTTGGCCCC TTCTTGGGAAGAAGA hsdR 1648582 - 1651560 + | putative type I site-specific deoxyribonuclease hsdR subunit TERM 2041 1651934 - 1651907 - g 70 -9.4 -2.60988 | opp_overlap 1651905, overlap 1651904 AAGGTAATGAATTTA TCTTTCAAATAT TAAA ATACTTGAAAGA AATTGGTTATTGGAA TERM 2042 1652485 - 1652503 + G 74 -4.6 -4.84017 | TTAGCCATTATTCCT GAGAAAAA ATA TTCTTCTC TTTTTATAAAAAATT hsdS 1651573 - 1652748 + | putative type I site-specific deoxyribonuclease hsdS subunit hsdM 1652761 - 1654341 + | putative type I site-specific deoxyribonuclease hsdM modification subunit TERM 2043 1654349 - 1654387 + T 77 -9 -3.6715 | opp_overlap 1654354, overlap 1654354 1654356 GAAACTAAAAGACAA AAAAACACCACAGTAG ATGATTA CTACTGTGGCGTTTTA TTTAAAATTGAGTAG TERM 2044 1654382 - 1654354 - T 100 -11.1 -5.9362 | opp_overlap 1654354 1654349 1654356 TAAAAGACAAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 2045 1654354 - 1654382 + T 95 -8.9 -4.90525 | opp_overlap 1654354, overlap 1654349 1654356 TAAAAGACAAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 2046 1654356 - 1654380 + T 75 -10.1 -2.70854 | opp_overlap 1654354, overlap 1654354 1654349 AAAGACAAAAAAACA CCACAGTAG ATGATTA CTACTGTGG CGTTTTATTTAAAAT TERM 2047 1654639 - 1654664 + T 75 -8.5 -3.34233 | TAAATTAGTTCCAAT CGTTGATATAT AAGC ATATATTAACG TTCTGGGAGTTGTGA TERM 2048 1654859 - 1654881 + T 85 -9.2 -4.04174 | opp_overlap 1654859 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA TERM 2049 1654881 - 1654859 - T 87 -11.4 -3.17714 | opp_overlap 1654859 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA salR 1655503 - 1654898 - | putative response regulator of salavaricin regulon salK 1656905 - 1655484 - | putative two-component sensor histidine kinase salY 1658804 - 1657086 - | ABC transporter permease salX 1659731 - 1658994 - | ABC transporter ATP-binding protein salT 1661212 - 1659728 - | putative salivaricin A modification enzyme TERM 2050 1660610 - 1660588 - G 77 -8 -4.29845 | opp_overlap 1660588 CAATCGAATTCAAAA TATTATTAAT GGG ATTAATAATA TTTAAAACCATCATA SpyM3_1650 1661871 - 1661227 - | putative salivaricin A modification enzyme salB 1664683 - 1661849 - | putative salivaricin A modification enzyme TERM 2051 1664733 - 1664707 - R 100 -12.4 -4.68994 | opp_overlap 1664707 1664706 ACCACTACTTAAAAA TCCTGCCTAGAC TGA GTCTAAACAGGA AATTTTTAGTCTGCT salA 1664912 - 1664766 - | lantibiotic salivaricin A precursor lacG 1666833 - 1665427 - | 6-phospho-beta-galactosidase TERM 2052 1666894 - 1666869 - R 93 -10.5 -3.9712 | TCATTTCACTATAAA GGAAGATTGAG TACC CCCAACCTTCC CTAGTGAAATATTAT lacE 1668603 - 1666906 - | PTS system, lactose-specific IIBC component lacF 1668920 - 1668603 - | PTS system, lactose-specific IIA component lacD.2 1669927 - 1668944 - | tagatose 1,6-diphosphate aldolase lacC.2 1670860 - 1669931 - | tagatose-6-phosphate kinase lacB.2 1671421 - 1670906 - | galactose-6-phosphate isomerase subunit LacB TERM 2053 1670976 - 1671000 + g 86 -7.1 -5.10497 | GGGTTGTTTTGATCT TGGCTAGCATG TTG CAAGCTATCCA TTTTTTCAATCCATT lacA.2 1671884 - 1671456 - | galactose-6-phosphate isomerase subunit LacA TERM 2054 1672020 - 1672067 + H 87 -6.8 -5.54079 | gap 1, opp_overlap 1672020 1672024 1672027 1672051, overlap 1672024 1672027 1672029 1672044 1672044 CACCAAACATAAAAG TCAACATTTTTTTGTTTATTTTT ATA AAAAATAAAC-AAAATATGTTTA TTTTTTCATTTTTAC TERM 2055 1672024 - 1672063 + H 88 -7.6 -5.14819 | gap 1, opp_overlap 1672020 1672024 1672027 1672051, overlap 1672020 1672027 1672029 1672044 1672044 AAACATAAAAGTCAA CATTTTTTTGTTTATTTTT ATA AAAAATAAAC-AAAATATG TTTATTTTTTCATTT TERM 2056 1672027 - 1672061 + H 100 -10.4 -4.15047 | opp_overlap 1672024 1672020 1672027 1672051, overlap 1672024 1672020 1672029 1672044 1672044 CATAAAAGTCAACAT TTTTTTGTTTATTTTT ATA AAAAATAAACAAAATA TGTTTATTTTTTCAT TERM 2057 1672061 - 1672027 - H 77 -10.4 -2.55657 | opp_overlap 1672027 1672024 1672020 1672029 1672044 1672044, overlap 1672024 1672020 1672051 CATAAAAGTCAACAT TTTTTTGTTTATTTTT ATA AAAAATAAACAAAATA TGTTTATTTTTTCAT TERM 2058 1672029 - 1672059 + H 95 -13 -3.63489 | opp_overlap 1672027 1672024 1672020 1672051, overlap 1672027 1672024 1672020 1672044 1672044 TAAAAGTCAACATTT TTTTGTTTATTTTT ATA AAAAATAAACAAAA TATGTTTATTTTTTC TERM 2059 1672044 - 1672075 + H 70 -4.1 -4.82333 | gap 1, opp_overlap 1672027 1672024 1672020 1672051, overlap 1672029 1672027 1672024 1672020 1672044 TTTTGTTTATTTTTA T-AAAAAATAAACA AAATA TGTTTATTTTTTCA TTTTTACGTTATTAT TERM 2060 1672067 - 1672051 - H 76 -3.8 -5.252 | opp_overlap 1672029 1672027 1672024 1672020 1672044 1672044, overlap 1672027 1672024 1672020 TATTTTTATAAAAAA TAAACA AAATA TGTTTA TTTTTTCATTTTTAC lacR.2 1672329 - 1673102 + | putative lactose phosphotransferase system repressor protein TERM 2061 1673435 - 1673388 - f 74 -6.5 -4.39166 | gap 1, opp_overlap 1673390, overlap 1673390 TTTTAGACATCAAAA TACCTCTTAAGTAGATTTTGGT TCGTT ACCATG-TCTACTTAAGAGGTG TCTTCAAAGCGCTTT TERM 2062 1673390 - 1673433 + F 84 -11.3 -3.06815 | gap 1, opp_overlap 1673390 1673388 TTAGACATCAAAATA CCTCTTAAGTAGATTTTGGT TCGTT ACCATG-TCTACTTAAGAGG TGTCTTCAAAGCGCT TERM 2063 1673433 - 1673390 - f 81 -9.1 -3.79993 | gap 1, opp_overlap 1673390, overlap 1673388 TTAGACATCAAAATA CCTCTTAAGTAGATTTTGGT TCGTT ACCATG-TCTACTTAAGAGG TGTCTTCAAAGCGCT TERM 2064 1673455 - 1673478 + F 78 -7.6 -4.1585 | opp_overlap 1673445 1673455 CAAAGCGCTTTAAAA CGTTGATATA ACAG TATATTAACG TTTTGAGAATTGTGA SpyM3_1661 1673752 - 1674039 + | DNA-damage-inducible protein J SpyM3_1662 1674029 - 1674364 + | hypothetical protein TERM 2065 1674396 - 1674375 - T 85 -8.7 -4.21314 | opp_overlap 1674375 AATAACACGTTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA TERM 2066 1674375 - 1674396 + T 100 -10.9 -5.18357 | opp_overlap 1674375 AATAACACGTTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA TERM 2067 1675189 - 1675169 - T 90 -8.3 -5.2853 | opp_overlap 1675169 CAGCCAAAAAGAAAA GGCACAACT AGC AGTTGCACC TCTTTCAATTGAGTC TERM 2068 1675581 - 1675607 + T 72 -8 -3.47941 | opp_overlap 1675581 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG TERM 2069 1675607 - 1675581 - T 100 -12.4 -5.77632 | opp_overlap 1675581 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG rpsI 1676026 - 1675634 - | 30S ribosomal protein S9 TERM 2070 1675910 - 1675927 + g 82 -4.2 -5.45652 | TAGGTCAGCATGTGG GATGTA TTCTTC TACATC TTTTTTGTTAACAGT rplM 1676493 - 1676047 - | 50S ribosomal protein L13 TERM 2071 1676691 - 1676705 + r 75 -10 -2.73875 | opp_overlap 1676690 1676689, overlap 1676688 AGATTTAGGAGAATG GCAGAG CTG CTCTGC TGGTGTTAACGAGAA SpyM3_1665 1676917 - 1676711 - | putative transcription regulator SpyM3_1666 1677612 - 1676914 - | hypothetical protein TERM 2072 1677705 - 1677728 + r 72 -8.2 -3.3676 | opp_overlap 1677705 TTAAGCAGCAAAAAA GGATTGAGGG TTTC TCTTCAATCC TTATAAGGTATTAAC TERM 2073 1677728 - 1677705 - R 82 -5.3 -5.2189 | opp_overlap 1677705 TTAAGCAGCAAAAAA GGATTGAGG GTTTCT CTTCAATCC TTATAAGGTATTAAC SpyM3_1667 1678599 - 1677739 - | hypothetical protein TERM 2074 1678683 - 1678669 - R 83 -4.9 -5.52986 | ATTTTATCAAAAAAA CCCGC ACTTG GCGAG TCATAATTCTCATTA SpyM3_1668 1679214 - 1678696 - | hypothetical protein TERM 2075 1679158 - 1679177 + g 79 -10.8 -3.22951 | opp_overlap 1679146, overlap 1679157 AAACAACTGACGGGT TGATTGCC AAAA GGCAATCA TATTATACCCATCTA SpyM3_1669 1679964 - 1679218 - | SpoU family tRNA/rRNA methyltransferase SpyM3_1670 1680808 - 1680011 - | hypothetical protein TERM 2076 1681006 - 1680983 - R 89 -9 -4.29738 | gap 1, opp_overlap 1680986 TCAGATCTATGAAAA TAAGAGTCTCC TAG GG-GACTCTTA TGAGGATATCAATTG SpyM3_1671 1681417 - 1681004 - | hypothetical protein cysS 1682753 - 1681410 - | cysteinyl-tRNA synthetase SpyM3_1673 1683011 - 1682781 - | hypothetical protein TERM 2077 1682950 - 1682930 - G 79 -3.3 -5.52384 | GTCTCAGTAAAAAAA TTAGACTAG CCA CCAGTGTAA TACTAAAAACAAGGA TERM 2078 1683053 - 1683035 - R 100 -11.8 -4.90266 | TTTATTAACGAAAAA CCTTCACA ACC TGTGAAGG CTTCAGAAAGTAGAC cysE 1684071 - 1683490 - | putative serine acetyltransferase SpyM3_1675 1684832 - 1684080 - | hypothetical protein TERM 2079 1684625 - 1684650 + g 72 -9.1 -3.30039 | opp_overlap 1684643, overlap 1684623 1684627 1684641 1684643 GACTTTGAGCACTCT TTTGTTCCTCT TTAA AGAGGAACATA TCTTCCTTATCGGTA TERM 2080 1684627 - 1684648 + g 83 -11.7 -3.21064 | opp_overlap 1684643, overlap 1684625 1684623 1684641 1684643 CTTTGAGCACTCTTT TGTTCCTCT TTAA AGAGGAACA TATCTTCCTTATCGG TERM 2081 1684771 - 1684735 - G 78 -7.3 -4.39166 | overlap 1684738 GCCCAGACAGGAAAA TTATGGAAAGCGTTGAC AAG GGCAACACTATCCAAAA AATTATCAGGTGCAT TERM 2082 1684768 - 1684738 - G 70 -9 -3.17273 | overlap 1684735 CAGACAGGAAAATTA TGGAAAGCGTTGAC AAG GGCAACACTATCCA AAAAATTATCAGGTG pnp 1686957 - 1684825 - | polynucleotide phosphorylase/polyadenylase TERM 2083 1687222 - 1687205 - R 91 -4.1 -5.77856 | opp_overlap 1687205 AACAAAGCAAAAAAA GCAGG TTGGTATG CCTGC TTTCGTCTCCTAATA SpyM3_1677 1687966 - 1687238 - | putative translaldolase ulaA 1689358 - 1687979 - | ascorbate-specific PTS system enzyme IIC TERM 2084 1688255 - 1688239 - G 70 -8.7 -3.33483 | TAGCGAAAGCACCAA TCATCGC ACC GCGACGA CCACCTGTTGAATTT SpyM3_1679 1689669 - 1689385 - | putative PTS system IIB component SpyM3_1680 1691722 - 1689662 - | putative transcriptional regulator TERM 2085 1691880 - 1691893 + r 84 -6.7 -5.15167 | AAAATAGGCAAATCT GGGAA TTGA TTCCC TTTTTCTTCATGATA TERM 2086 1691946 - 1691909 - R 100 -15.9 -2.78384 | opp_overlap 1691912, overlap 1691912 1691917 TTTTTCTTCATGATA CAACAAAAGATACCTCA TCAC TGAGATACCTTTTGTTG CTAAATAAAATCATC TERM 2087 1691943 - 1691912 - R 91 -11.8 -3.54475 | opp_overlap 1691912, overlap 1691909 1691917 TTCTTCATGATACAA CAAAAGATACCTCA TCAC TGAGATACCTTTTG TTGCTAAATAAAATC TERM 2088 1691938 - 1691917 - R 81 -5.9 -4.85918 | opp_overlap 1691912, overlap 1691912 1691909 CATGATACAACAAAA GATACCTCA TCAC TGAGATACC TTTTGTTGCTAAATA TERM 2089 1692058 - 1692037 - R 88 -7.9 -5.18355 | opp_overlap 1692037 1692039 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA TERM 2090 1692037 - 1692058 + r 74 -5.7 -4.66833 | opp_overlap 1692037, overlap 1692039 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA rpsO 1692343 - 1692074 - | 30S ribosomal protein S15 TERM 2091 1692180 - 1692197 + g 70 -5.5 -4.38219 | ATTTTTTTCATCAAT CCACGGT AAGT AGCGTGG TCTTTTTTGTGTTCT SpyM3_1682 1692719 - 1692519 - | hypothetical protein TERM 2092 1692591 - 1692604 + g 72 -4.5 -4.66163 | opp_overlap 1692584 1692591 ACTAGCAAGGCCAAA TAGCC AATA GGCTG TTTTTAAATCAGAAT SpyM3_1683 1692845 - 1693114 + | hypothetical protein TERM 2093 1693809 - 1693790 - g 74 -5 -4.67904 | GATCAATGCTAAAAA CCCCTTTG AAAC CAAAGAAG AGCTCTTGATTTTAG def 1693215 - 1693829 + | peptide deformylase TERM 2094 1693848 - 1693837 - T 79 -3.6 -5.5353 | opp_overlap 1693830, overlap 1693830 TAGACTAACAAAAAA GGCC CTTT AGCC TTTTTTTGTTAGTCT SpyM3_1685 1694404 - 1693862 - | hypothetical protein SpyM3_1686 1694963 - 1694535 - | MarR family transcriptional regulator TERM 2095 1694803 - 1694782 - G 89 -10.3 -4.1673 | overlap 1694785 GAAGTCGCTAACAAA GAATCAATC AAGT GATTGATTC GCATACAGCCTTTAG TERM 2096 1694800 - 1694785 - G 71 -6.2 -4.20367 | overlap 1694782 GTCGCTAACAAAGAA TCAATC AAGT GATTGA TTCGCATACAGCCTT polC 1699470 - 1695073 - | DNA polymerase III PolC TERM 2097 1695642 - 1695664 + g 74 -6.3 -4.4009 | opp_overlap 1695645 TTTTTCCACACGATT CAATGTACC AGTCG GGCACATTG TTTTCTCGCATGGCA TERM 2098 1695975 - 1695995 + g 75 -9.7 -3.38361 | opp_overlap 1695974 1695973 AGTTGGTTCCAAATT CTGGAATGC CGA GCATGCCAG TTGGTGTTCCAATTT TERM 2099 1697988 - 1697968 - G 71 -6.9 -4.08945 | ACTATCTTTGCAAAA GTCCTGAAA AGC TTTTAGGAC AGTAACCAATGGCTT TERM 2100 1699711 - 1699687 - R 72 -5 -4.80882 | gap 1 AGTTCACAGCAAAAA GAGGCCACTCT AAAC AG-GCAGCCTC CTCATTTCTTTTTTA proS 1701580 - 1699724 - | prolyl-tRNA synthetase TERM 2101 1701695 - 1701728 + r 93 -9 -4.77986 | opp_overlap 1701695 TTTCATTTTGAGTAA GACCTCAATCCT TGCAAATCTT AGGGTTGAGGTC TTTTTCGATCTTTAA eep 1703037 - 1701778 - | putative determinant for enhanced expression of pheromone TERM 2102 1702990 - 1702973 - G 70 -5.6 -4.48449 | TTAGCAAAATAGAAA TGTCCA AATTCA TGGACA ATCACTAAAATACCA cdsA 1703904 - 1703110 - | putative phosphatidate cytidylyltransferase TERM 2103 1703773 - 1703753 - G 77 -7.7 -4.16146 | opp_overlap 1703752 1703753 AAAACACCTTCAAAA GAAAAGACT TCT AATCTTTTC ATTTTCAGTAATTCT uppS 1704666 - 1703917 - | putative undecaprenyl pyrophosphate synthetase TERM 2104 1704715 - 1704730 + r 79 -4.6 -5.31456 | TATTTTATCATATTT CACGCC TTTT GGCTTG TTTTTTATCAATTAG TERM 2105 1704874 - 1704853 - R 89 -3.1 -5.83211 | gap 1, opp_overlap 1704853, overlap 1704846 GATCAAAACAAAAAA GTTTGGCATA TTT CAT-CCAAAC TTTCCCCGCCTTAAT TERM 2106 1704901 - 1704919 + r 71 -8.8 -2.99545 | overlap 1704898 TAATGGCTTTCAATG GCACTGTC AGT GTCAGTGC TATCTACTGTCTCAA yajC 1705250 - 1704885 - | preprotein translocase subunit YajC TERM 2107 1705161 - 1705172 + g 72 -3.6 -5.08831 | GTTTAACTGATTTTG GCGT TCTT GCGC TTGTTTTTTTTGTTG SpyM3_1693 1705713 - 1705366 - | putative transport accessory protein TERM 2108 1705461 - 1705449 - G 72 -9.1 -3.35813 | GCTGATCGTAACTAA CCAGC AAA GCTGG AACTGTCACTAATTG pulA 1709352 - 1705855 - | putative pullulanase TERM 2109 1707725 - 1707736 + g 75 -5.8 -4.70626 | opp_overlap 1707725 1707723 GCTTCATAGATAATA GCGT CTTC ACGC TTTTTAAAGTTGTTA TERM 2110 1707804 - 1707815 + g 70 -5.8 -4.371 | overlap 1707803 TTGGATCAATAAAGG CAGC TTTT GCTG TTTTGATGTCATCAG TERM 2111 1709526 - 1709486 - R 71 -5.5 -4.63928 | gap 1, opp_overlap 1709491 1709493, overlap 1709487 1709491 ATAGGATCTCAAAAA TCAAACAGCCAAAACGAG TTTTCG CTCGCTT-GGCTGTTGGG TAAACTCAAATCACA TERM 2112 1709525 - 1709487 - R 75 -9 -3.37634 | gap 1, opp_overlap 1709491 1709493, overlap 1709486 1709491 TAGGATCTCAAAAAT CAAACAGCCAAAACGAG TTTTCG CTCGCTT-GGCTGTTGG GTAAACTCAAATCAC TERM 2113 1709521 - 1709491 - R 83 -8.4 -4.32649 | gap 1, opp_overlap 1709491 1709493, overlap 1709487 1709486 ATCTCAAAAATCAAA CAGCCAAAACGAG TTTTCG CTCGCTT-GGCTG TTGGGTAAACTCAAA dexB 1711163 - 1709550 - | putative dextran glucosidase TERM 2114 1711283 - 1711240 - R 95 -12.8 -3.53343 | gap 1, opp_overlap 1711240 1711254, overlap 1711245 1711254 AATCGTTTGCGCAAA TGACA-TGATAAAAAGGTTGG AAC CCAACCTTTTTATCAATATCG CTTATACCTTAACGA TERM 2115 1711240 - 1711283 + r 86 -12.8 -2.64912 | gap 1, opp_overlap 1711240 1711245 1711254, overlap 1711254 AATCGTTTGCGCAAA TGACA-TGATAAAAAGGTTGG AAC CCAACCTTTTTATCAATATCG CTTATACCTTAACGA TERM 2116 1711277 - 1711245 - R 100 -19.5 -3.00525 | opp_overlap 1711240 1711254, overlap 1711240 1711254 TTTGCGCAAATGACA TGATAAAAAGGTTGG AAC CCAACCTTTTTATCA ATATCGCTTATACCT TERM 2117 1711254 - 1711268 + r 100 -10 -4.89852 | opp_overlap 1711245 1711240 1711254, overlap 1711240 ATGACATGATAAAAA GGTTGG AAC CCAACC TTTTTATCAATATCG TERM 2118 1711268 - 1711254 - R 100 -10 -4.95758 | opp_overlap 1711254 1711240, overlap 1711245 1711240 ATGACATGATAAAAA GGTTGG AAC CCAACC TTTTTATCAATATCG msmK 1712425 - 1711292 - | sugar ABC transporter ATP-binding protein TERM 2119 1712630 - 1712617 - R 71 -3.1 -5.12916 | CATAAAACAAGAAAA CTATG TAAA CACAG GCCGGTCACAGGAGC TERM 2120 1712722 - 1712705 - R 100 -9.9 -5.1675 | opp_overlap 1712704 CCAGGCAGCAAAAAA GAAAGCC AAGT GGCTTTC CTAATATTTCAACAA lrp 1713571 - 1712723 - | leucine-rich protein TERM 2121 1714856 - 1714846 - gR 85 -6.8 -5.04385 | opp_overlap 1714845, overlap 1714835 TACATCCTTAAAAAA GGAG AGT CTCC GTATGATCCCTTTGA TERM 2122 1714924 - 1714905 - gR 75 -8.6 -3.48024 | opp_overlap 1714903, overlap 1714903 GTTCACCATCAAATA CGTTGATG TCAA CACCAACG AATTGCTAAAAAGCG SpyM3_1699 1715360 - 1715202 - | hypothetical protein ska 1713931 - 1715253 + | streptokinase A precursor TERM 2123 1715294 - 1715323 + gT 83 -5.1 -5.26918 | opp_overlap 1715294 TAACTGACAAAAAAA GCAAGCAAC ACGCTATCAACA GTTGCTTGC TTTTTTCTAACCTCT TERM 2124 1715323 - 1715294 - GT 100 -8.7 -5.66684 | gap 1, opp_overlap 1715294 TAACTGACAAAAAAA GCAAGCAACACGCT ATC AACA-GTTGCTTGC TTTTTTCTAACCTCT dtd 1715794 - 1715351 - | D-tyrosyl-tRNA deacylase relA 1717971 - 1715809 - | (p)ppGpp synthetase TERM 2125 1717641 - 1717660 + g 73 -7.2 -4.09739 | gap 1, opp_overlap 1717640 TATCTTTGGACATAG CCATCAGCA TTT TGC-GATGG TTTTCGGCGAGTTGC TERM 2126 1718240 - 1718215 - R 86 -8.4 -4.72272 | opp_overlap 1718210 1718215 GCTCCCGACCAAAAA TAGAGAGAAC TAAGGG GCTCTCTCTA TTATGTTTGCTTATC TERM 2127 1718215 - 1718240 + r 73 -6.9 -3.91905 | opp_overlap 1718215, overlap 1718210 GCTCCCGACCAAAAA TAGAGAGAACT AAGG GGCTCTCTCTA TTATGTTTGCTTATC sclA 1718555 - 1718280 - | putative collagen-like protein TERM 2128 1718716 - 1718729 + r 70 -8.1 -3.28712 | overlap 1718722 CCGCGTTAACCTCGA GGTCC TGCT GGACC TTGTGCGCCACGAGC TERM 2129 1718722 - 1718750 + r 80 -9.5 -3.55444 | overlap 1718716 TAACCTCGAGGTCCT GCTGGACCTTGTG CGC CACGAGCACCAGC TTTACCGGCTGGGCC sclA 1719125 - 1718706 - | putative collagen-like protein SpyM3_1704 1719526 - 1720659 + | IS1548 transposase SpyM3_1705 1720664 - 1720798 + | hypothetical protein TERM 2130 1721085 - 1721115 + G 91 -11.8 -3.81146 | overlap 1721086 GGAGAGTTTATTGCT GCCCATGGCAACGC CCA GCGTTGTCTTGGGA TTATTGGTTCAGGCA TERM 2131 1721086 - 1721114 + G 95 -15.3 -2.88366 | overlap 1721085 GAGAGTTTATTGCTG CCCATGGCAACGC CCA GCGTTGTCTTGGG ATTATTGGTTCAGGC TERM 2132 1721175 - 1721189 + G 73 -8.6 -3.62275 | opp_overlap 1721174 1721171 1721169 ACAGCCAAACAGTAT GCCAAA CGC TTTGGC TTTCCACTGCTAGGT nrdI.1 1720833 - 1721315 + | hypothetical protein TERM 2133 1721583 - 1721628 + T 100 -18.6 -3.29273 | opp_overlap 1721587, overlap 1721587 GGTTACTGATATGAC TAAAGAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTCTTTG TGTTCTCCTAATCCC TERM 2134 1721624 - 1721587 - T 100 -17.2 -3.82218 | opp_overlap 1721583 1721587 ACTGATATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTC TTTGTGTTCTCCTAA TERM 2135 1721587 - 1721624 + T 100 -17.2 -4.29304 | opp_overlap 1721587, overlap 1721583 ACTGATATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTC TTTGTGTTCTCCTAA rgfB 1722528 - 1721710 - | putative RgfB protein SpyM3_1708 1724793 - 1722607 - | PTS system, glucose-specific IIABC component TERM 2136 1725108 - 1725083 - R 90 -3.9 -5.87996 | opp_overlap 1725083 1725100 1725101 GAAGCAATAAAAAAA GGCCGTTGACA CAAT CGTGAACTGCC TGTTCGTTTCTCTAG TERM 2137 1725136 - 1725157 + r 72 -5.9 -4.2828 | opp_overlap 1725139, overlap 1725139 TAGCCTCTTCTTTCT AAAGTAAGC AACA GCTTACTTA TTTTGATGCCTGCAA TERM 2138 1725139 - 1725154 + r 78 -7.6 -4.26327 | opp_overlap 1725139, overlap 1725136 CCTCTTCTTTCTAAA GTAAGC AACA GCTTAC TTATTTTGATGCCTG TERM 2139 1725154 - 1725139 - R 71 -7.6 -3.53012 | opp_overlap 1725139 1725136 CCTCTTCTTTCTAAA GTAAGC AACA GCTTAC TTATTTTGATGCCTG SpyM3_1709 1725904 - 1725155 - | hypothetical protein TERM 2140 1725337 - 1725325 - G 83 -4.8 -5.19879 | opp_overlap 1725325 GTCCAAAGATAAAAA GGAG TTTTG CTCC TGGTTTAACTTCTTT TERM 2141 1725854 - 1725866 + g 100 -6.3 -5.75599 | GATGGTATCTTTATC GGTAA TCG TTACC TTTTTTTCTGCTTTG prmA 1726857 - 1725904 - | ribosomal protein L11 methyltransferase SpyM3_1711 1727359 - 1726928 - | hypothetical protein TERM 2142 1727815 - 1727836 + G 73 -7.3 -4.13767 | opp_overlap 1727814 1727817 CCCATAATGACAGAC TAGGCAACG AGTA CCTTGCCTA TTTTACGGTGCACAA pabP 1727670 - 1729355 + | putative para-aminobenzoate synthetase TERM 2143 1729611 - 1729601 - g 79 -5.4 -4.93877 | TTTTACCAAACAAAA CCTA TCT TAGG AGTGTGTCTGGGACA trpG 1729388 - 1729954 + | anthranilate synthase component II TERM 2144 1730068 - 1730050 - g 70 -3.1 -4.85599 | overlap 1730052 GTCATCGGACAAAAA CACCTTG TTGGC CAAGGCA AAATCATCCGTCGCA SpyM3_1714 1729987 - 1731255 + | recombination factor protein RarA TERM 2145 1731624 - 1731655 + F 79 -8.2 -4.015 | opp_overlap 1731625 1731632, overlap 1731625 1731632 GGGTATAAATTATAC ATAAAAAAGCCTTT AAAT AAAGGCTTTTTTGC TTGTTTCATAACTAA TERM 2146 1731625 - 1731654 + F 84 -11.7 -3.00418 | opp_overlap 1731625 1731632, overlap 1731624 1731632 GGTATAAATTATACA TAAAAAAGCCTTT AAAT AAAGGCTTTTTTG CTTGTTTCATAACTA TERM 2147 1731654 - 1731625 - f 74 -9.5 -3.08467 | opp_overlap 1731625 1731624 1731632, overlap 1731632 GGTATAAATTATACA TAAAAAAGCCTTT AAAT AAAGGCTTTTTTG CTTGTTTCATAACTA TERM 2148 1731632 - 1731647 + F 93 -7.6 -5.4148 | opp_overlap 1731625 1731632, overlap 1731625 1731624 ATTATACATAAAAAA GCCTTT AAAT AAAGGC TTTTTTGCTTGTTTC TERM 2149 1731647 - 1731632 - f 93 -7.6 -5.43414 | opp_overlap 1731632 1731625 1731624, overlap 1731625 ATTATACATAAAAAA GCCTTT AAAT AAAGGC TTTTTTGCTTGTTTC SpyM3_1715 1731889 - 1732158 + | hypothetical protein SpyM3_1716 1732119 - 1732514 + | hypothetical protein SpyM3_1717 1733065 - 1732931 - | hypothetical protein dppA 1733244 - 1734872 + | surface lipoprotein DppA TERM 2150 1735780 - 1735792 + G 82 -7.7 -4.52047 | overlap 1735776 TTTGGAGGATCTGTT CTTGC TGA GCAAG TTTTCTCATATCCTG dppB 1735099 - 1735962 + | putative dipeptide ABC transporter, permease protein dppC 1735959 - 1736780 + | putative dipeptide ABC transporter, permease protein dppD 1736792 - 1737595 + | putative dipeptide ABC transporter, ATP-binding protein dppE 1737579 - 1738205 + | putative dipeptide ABC transporter, ATP-binding protein TERM 2151 1738251 - 1738289 + T 86 -8.4 -4.81523 | opp_overlap 1738249 1738251 1738263, overlap 1738263 TCTAACAAAATCACA CCATTAAAAAAACCAGTT TAC AGCTGGTTTTTTTAATTA TTTTAATTTTTCCTT TERM 2152 1738289 - 1738251 - T 70 -8.4 -3.18634 | opp_overlap 1738251 1738263, overlap 1738249 1738263 TCTAACAAAATCACA CCATTAAAAAAACCAGTT TAC AGCTGGTTTTTTTAATTA TTTTAATTTTTCCTT TERM 2153 1738263 - 1738277 + T 89 -6.4 -5.73672 | opp_overlap 1738251 1738249 1738263, overlap 1738251 ACACCATTAAAAAAA CCAGTT TAC AGCTGG TTTTTTTAATTATTT TERM 2154 1738277 - 1738263 - T 82 -4.2 -5.56568 | opp_overlap 1738263 1738251, overlap 1738251 1738249 ACACCATTAAAAAAA CCAGTT TAC AGCTGG TTTTTTTAATTATTT SpyM3_1723 1738487 - 1738287 - | hypothetical protein TERM 2155 1738456 - 1738466 + g 71 -4 -4.86293 | CCACCAGATGCTTGC TCAA TTT TTGA TTTTAATTTTTCTTC SpyM3_1724 1741127 - 1738656 - | histidine triad protein TERM 2156 1739636 - 1739660 + g 75 -2.9 -5.33026 | overlap 1739637 TTGTTACTTTGCGAC TCACTTTTTTA GTG TCAAAGAGTGG TTTTTCTTTGCCTTG TERM 2157 1740370 - 1740386 + g 74 -6.5 -4.44608 | opp_overlap 1740369 GGGCGGTAATCAGAC GGTCTAG CAC CTCGACC TTGTTTTTGACTCCA TERM 2158 1740654 - 1740664 + g 73 -5.4 -4.62669 | overlap 1740659 AGTTCCTTTGGCTAC TTGC TCA GCAA TTTGTTGTTTGGTTC lmb 1742060 - 1741140 - | laminin-binding protein TERM 2159 1741203 - 1741227 + g 79 -11.5 -2.65274 | overlap 1741202 TAGATATGTCTTGTT TCCGCTTGGAG CAG CTTCAAGTGGA CTTAATGTCTTTACT TERM 2160 1741693 - 1741718 + g 82 -8.3 -4.14392 | TCCATATCTTCTAGC CCTTTGACTCT ATCT AGTGTCAGAGG TTTTGACGCTTCAAA TERM 2161 1741738 - 1741748 + g 85 -4 -5.53288 | opp_overlap 1741738 GACGCTTCAAACACA TCAA CCT TTGA TTTTTTTAAATTAGG TERM 2162 1742292 - 1742266 - R 100 -16.8 -5.76633 | opp_overlap 1742266 1742268 1742270 1742272 GCACATATAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2163 1742266 - 1742292 + r 100 -16.8 -3.0792 | opp_overlap 1742266, overlap 1742268 1742270 1742272 GCACATATAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2164 1742268 - 1742290 + r 95 -15 -3.09505 | opp_overlap 1742266, overlap 1742266 1742270 1742272 ACATATAAAAAAATA GAGAGAACCA AAT TGGTTCTCTC TATTAAATAAGCTCT TERM 2165 1742270 - 1742288 + r 85 -11.8 -3.10522 | opp_overlap 1742266, overlap 1742268 1742266 1742272 ATATAAAAAAATAGA GAGAACCA AAT TGGTTCTC TCTATTAAATAAGCT TERM 2166 1742272 - 1742286 + r 71 -8.6 -3.11072 | opp_overlap 1742266, overlap 1742270 1742268 1742266 ATAAAAAAATAGAGA GAACCA AAT TGGTTC TCTCTATTAAATAAG scpA 1745832 - 1742323 - | C5A peptidase precursor TERM 2167 1742952 - 1742963 + g 70 -3.6 -5.00138 | TACGCTCACGGTAAA CCGG TTGG CTGG TTTTTGGTTTAGATG TERM 2168 1745905 - 1745884 - R 100 -11.7 -4.73613 | opp_overlap 1745888 TGACCATTAAGAAAA GAGAGAATC AAAC GATTCTCTC CTAGCTGTCCATCTG TERM 2169 1746148 - 1746169 + r 93 -13.1 -3.38072 | opp_overlap 1746148 CTTCTATACATAAAA GAGAGAACC GACT GGTTCTCTC TTGATGTTCACTCAG TERM 2170 1746169 - 1746148 - R 100 -13.1 -4.60797 | opp_overlap 1746148 CTTCTATACATAAAA GAGAGAACC GACT GGTTCTCTC TTGATGTTCACTCAG emm3 1747947 - 1746202 - | antiphagocytic M protein, type 3 TERM 2171 1747397 - 1747410 + g 72 -3.1 -5.098 | overlap 1747386 TGGCCAACTTTAGCA GTTGC TTCT GTAAC TTTCTTTTCTTTTTC TERM 2172 1747910 - 1747936 + g 72 -4.4 -4.67168 | overlap 1747913 1747915 CCTGTTTTTAATTTT CTAAGCGAATAG TGT CTATTCGTGTTG TTTTTAGCCATTTTT TERM 2173 1747915 - 1747931 + g 83 -9.5 -3.80746 | overlap 1747913 1747910 TTTTAATTTTCTAAG CGAATAG TGT CTATTCG TGTTGTTTTTAGCCA mga 1749741 - 1748131 - | M protein trans-acting positive regulator, multi-gene activator TERM 2174 1748499 - 1748514 + g 86 -7.6 -5.04222 | opp_overlap 1748499, overlap 1748493 TTTCAATCACCAGAA GACGAA TTTT TTCGTC TTTTTGATTTACTTC TERM 2175 1748607 - 1748619 + g 70 -3.4 -4.84359 | TGATAGGTTCTTTCT CTGA ACGCA TCAG TTTTTCTACACCTGC TERM 2176 1749648 - 1749670 + g 93 -9.8 -4.69326 | overlap 1749650 TGCTGAGTTCTTTAT CTTTGACGCC AAT GGCGTCAGCG TTTTCTGTTACGTAT TERM 2177 1749650 - 1749668 + g 76 -11 -2.63584 | overlap 1749648 CTGAGTTCTTTATCT TTGACGCC AAT GGCGTCAG CGTTTTCTGTTACGT SpyM3_1729 1750129 - 1750323 + | hypothetical protein TERM 2178 1750373 - 1750410 + T 71 -8.7 -2.97146 | opp_overlap 1750373, overlap 1750372 CAAAAGACAAAAAAA CTTCCAATAACTTAG CTTGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT TERM 2179 1750410 - 1750373 - T 100 -10.9 -5.9362 | opp_overlap 1750373 1750372 CAAAAGACAAAAAAA CTTCCAATAACTTAG CTTGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT SpyM3_1730 1750680 - 1750429 - | hypothetical protein isp.1 1752386 - 1750758 - | immunogenic secreted protein precursor TERM 2180 1751329 - 1751342 + g 84 -2.3 -5.72207 | ATCAAGGTATCCAAC TGGCC TAGT GACCA TTTTTTTGCTTTGAG SpyM3_1732 1753876 - 1752488 - | putative histidine kinase SpyM3_1733 1754526 - 1753873 - | putative two-component response regulator TERM 2181 1753917 - 1753934 + g 89 -5.5 -5.40474 | TGCCTGTAATTGTCT TGAGGGG AATA CCCGTCA TTTTTTTACGAAGGT TERM 2182 1754570 - 1754591 + r 81 -5.9 -4.89729 | gap 1, opp_overlap 1754570, overlap 1754578 GTATCAAGCAGCTAA GGATGACATC AAA GG-GTCATCC TTTTTGACTTTTATG SpyM3_1734 1755837 - 1754620 - | ABC transporter permease TERM 2183 1754876 - 1754886 + g 88 -8.2 -5.14965 | ATAAGCTTACGTCTA GCGC CAA GCGC TTTTTTGATCCCAAT SpyM3_1735 1756524 - 1755850 - | ABC transporter ATP-binding protein TERM 2184 1756158 - 1756176 + g 72 -3.1 -5.01732 | gap 1, overlap 1756163 GCTTTAACATCTCTA GGGC-TCG TTTG CGACGCTC TTTTTTAGGAACATT SpyM3_1736 1757779 - 1756511 - | putative ATP-binding cassette transporter protein TERM 2185 1756867 - 1756882 + g 70 -3.2 -4.85177 | GGTCATTGCCACCTT GGCC TTGACCTT GGCC TTTTTCCTCTGCTTT TERM 2186 1758073 - 1758036 - R 76 -2.8 -5.45802 | opp_overlap 1758036 1758031 TTTGGAAAACAAAAA TCATATAACCGTTC GCTCACATAA GCACGGGTATATGA TTTTGTACATTTGCG SpyM3_1737 1758606 - 1758202 - | hypothetical protein SpyM3_1738 1758929 - 1758633 - | hypothetical protein TERM 2187 1759090 - 1759100 + H 70 -4 -4.98255 | TTGTTTTGTGACCTT GATT TTT AATC TTTTTCTCCTTAAAA TERM 2188 1759285 - 1759248 - g 70 -2.8 -5.0538 | overlap 1759250 CGTTACTCCAAAAAA GT-TTTGGCTGATGAGCC TACT GGCT-ATCAGCCACCGAC AGCTCATGGCCCGTG SpyM3_1739 1759173 - 1759409 + | hypothetical protein TERM 2189 1759394 - 1759436 + T 71 -8.7 -3.02829 | gap 2, overlap 1759397 CTGGTACTGGGGGTA TAGTCAGATTGGGTAGTTAGA GTT TCTGACT-CCCAATCAG-CTA TGTTAACGGACTATC TERM 2190 1759460 - 1759497 + T 100 -21.6 -5.53991 | opp_overlap 1759462 GACTATCACTGATAC CATTCACGCTAAGCCT CATTCT AGGCTTAGCGTGAATG TTTTTTTGCTGACTG TERM 2191 1759495 - 1759462 - T 100 -18.4 -2.65264 | opp_overlap 1759460 CTATCACTGATACCA TTCACGCTAAGCCT CATTCT AGGCTTAGCGTGAA TGTTTTTTTGCTGAC TERM 2192 1759561 - 1759522 - T 73 -7.3 -4.08216 | opp_overlap 1759523 1759524 1759529, overlap 1759524 1759525 1759529 TGACTGGTTTTAAAA CATTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAGCT TTATGACATTGCCCT TERM 2193 1759523 - 1759560 + T 93 -10.8 -3.92522 | opp_overlap 1759522 1759524 1759525 1759529, overlap 1759524 1759529 GACTGGTTTTAAAAC ATTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAGC TTTATGACATTGCCC TERM 2194 1759559 - 1759524 - T 91 -12.1 -3.63922 | opp_overlap 1759523 1759524 1759529, overlap 1759522 1759525 1759529 ACTGGTTTTAAAACA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2195 1759524 - 1759559 + T 93 -14.3 -2.95192 | opp_overlap 1759524 1759522 1759525 1759529, overlap 1759523 1759529 ACTGGTTTTAAAACA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2196 1759558 - 1759525 - T 100 -15.6 -2.78032 | opp_overlap 1759524 1759523 1759529, overlap 1759524 1759522 1759529 CTGGTTTTAAAACAT TAAAGACTCTATCC TTATTT GGATAGAGTCTTTA GCTTTATGACATTGC TERM 2197 1759554 - 1759529 - T 95 -12 -4.07678 | opp_overlap 1759524 1759523 1759529, overlap 1759525 1759524 1759522 TTTTAAAACATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA TERM 2198 1759529 - 1759554 + T 91 -12 -3.89215 | opp_overlap 1759529 1759525 1759524 1759522, overlap 1759524 1759523 TTTTAAAACATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA prsA 1760611 - 1759682 - | foldase protein PrsA TERM 2199 1760898 - 1760852 - R 71 -5.3 -4.64144 | gap 1, opp_overlap 1760860, overlap 1760860 AATAACTCTCAAAAA TCGTAAAAGGACTGAGTCCCAT CTCT ACAGAACTCAGTCC-TTTACCT TGGCATCTTAGGGAA TERM 2200 1760891 - 1760860 - R 100 -12.4 -4.31329 | opp_overlap 1760860, overlap 1760852 TCAAAAATCGTAAAA GGACTGAGTCCCAT CTCT ACAGAACTCAGTCC TTTACCTTGGCATCT SpyM3_1741 1761396 - 1761091 - | hypothetical protein speB 1762594 - 1761398 - | pyrogenic exotoxin B SpyM3_1743 1763036 - 1762866 - | hypothetical protein TERM 2201 1764106 - 1764117 + G 70 -3 -5.09762 | CGATTCGGATGTTTG TCAA TATG TTGA TTTTGTTTATTCAGC ropB 1763535 - 1764377 + | putative transcription regulator TERM 2202 1764391 - 1764413 + T 84 -6.3 -5.02715 | opp_overlap 1764391 GAGGCTCTTTAAAAA GCTAACGCT CTTAT GGTGTTAGC TTTTTGATTTGGTAT TERM 2203 1764511 - 1764530 + T 83 -6.5 -5.02201 | opp_overlap 1764503 1764511, overlap 1764505 GACAAATCATAAAAA GCAATGA CGGCAA TCATTGC TTTTTCTAGTATTTT TERM 2204 1764530 - 1764511 - T 88 -7.2 -5.06735 | opp_overlap 1764511 1764505, overlap 1764503 GACAAATCATAAAAA GCAATGAC GGCA ATCATTGC TTTTTCTAGTATTTT mf 1765433 - 1764618 - | mitogenic factor 25K precursor TERM 2205 1765321 - 1765379 + g 73 -6.8 -4.25104 | CGTGCCAGTGCAGTA TTTTCAAGTGTGACTGTTGTTACAGCCA TTG TGGCTGATACAAGAGCTACCATTGAAAA TTTTACTAGCCGACA TERM 2206 1766019 - 1766006 - g 73 -6.7 -4.15657 | GTAGAATTAGATAAA TTGGC TGAA GCCAA CCAGCTGTCTGAGCC SpyM3_1746 1765796 - 1766305 + | putative low temperature requirement C protein TERM 2207 1766345 - 1766307 - T 100 -17 -3.01329 | opp_overlap 1766312, overlap 1766312 CCAACCAACAATAAG CAAAACAAGTCTAGGAAG TGA CTCCCTAGACTTGTTTTT TTGAGGTTATCTGGC TERM 2208 1766340 - 1766312 - T 100 -16.9 -4.61824 | opp_overlap 1766312, overlap 1766307 CAACAATAAGCAAAA CAAGTCTAGGAAG TGA CTCCCTAGACTTG TTTTTTTGAGGTTAT TERM 2209 1766312 - 1766340 + T 100 -14.7 -5.48303 | opp_overlap 1766312 1766307 CAACAATAAGCAAAA CAAGTCTAGGAAG TGA CTCCCTAGACTTG TTTTTTTGAGGTTAT gldA 1767475 - 1766387 - | glycerol dehydrogenase mipB 1768200 - 1767532 - | fructose-6-phosphate aldolase pflD 1770630 - 1768213 - | putative pyruvate formate-lyase TERM 2210 1768502 - 1768524 + g 70 -7.8 -3.68529 | overlap 1768490 CCTCCGACAATCTCA TCTGTTGGTA ATT TAGCAACAGA TTTCAATACTGAAGT TERM 2211 1769126 - 1769142 + g 71 -5.1 -4.5774 | overlap 1769129 GTAATTTCGCGCAAG GTGGCAT CCC ATGCTGC TTTTAATTCTTCATA TERM 2212 1769627 - 1769646 + g 71 -6.4 -4.2704 | gap 1, opp_overlap 1769627 CCTGCTGATGAGAAG GTGTGG-GC TTG GCTCCGCAC TTTGTTAATGGTCAA TERM 2213 1770814 - 1770795 - R 77 -5.7 -5.00616 | TCTTTTTCTAAAAAA CCACCTC TAACTG GAGATGG TCTCAAGAATTTGTG SpyM3_1750 1772145 - 1770841 - | PTS system, cellobiose-specific IIC component SpyM3_1751 1772463 - 1772155 - | PTS system, cellobiose-specific IIB component SpyM3_1752 1772811 - 1772491 - | PTS system, cellobiose-specific IIA component TERM 2214 1773065 - 1773043 - R 93 -5.5 -5.99154 | gap 1, opp_overlap 1773056 CATCAAACAAAAAAA GCCC-TGACC GTTT GGTCTTGGGC CTCTATAAATATCAT SpyM3_1753 1774079 - 1773099 - | putative transcriptional regulator SpyM3_1754 1774841 - 1774095 - | putative transcriptional regulator SpyM3_1755 1774967 - 1775740 + | putative pyruvate formate-lyase activating enzyme TERM 2215 1775844 - 1775883 + G 100 -14.6 -3.22223 | TGCCTTTACCTTTAT GCTTTTTTAAAGCTCAAA CCAG TATGGGCTTTAAAAAAGC TTACTAATCAGATTA TERM 2216 1775934 - 1775915 - g 100 -13.6 -5.34555 | opp_overlap 1775911 TGATACTACAAAAAA GGCTGGGA ATAC TCCCAGCC TAGGCTTTTCCAAGC SpyM3_1756 1775775 - 1775975 + | hypothetical protein secE 1776153 - 1775977 - | preprotein translocase subunit SecE TERM 2217 1776196 - 1776214 + r 76 -6.8 -4.59982 | TGTGTAAGGTATATG TTTTGCAG TAT TTGCAAAA TTTATTTACTTCTAG pbp2A 1778638 - 1776368 - | penicillin-binding protein 2a TERM 2218 1777713 - 1777723 + g 70 -3.2 -4.9138 | AGCCCTACTGCTCTA GCTT GCT GAGC TTTTGTTTGGGTAAT SpyM3_1759 1779123 - 1778743 - | putative translation initiation inhibitor SpyM3_1760 1779614 - 1779805 + | hypothetical protein SpyM3_1761 1779852 - 1780700 + | putative ribosomal large subunit pseudouridine synthase TERM 2219 1780719 - 1780679 - T 100 -14.9 -3.57792 | opp_overlap 1780681 1780688, overlap 1780680 1780688 TGACGCAGTCTTAAA CGCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGTT TATCTGTTTTCATAG TERM 2220 1780718 - 1780680 - T 100 -18.4 -2.74461 | opp_overlap 1780681 1780688, overlap 1780679 1780688 GACGCAGTCTTAAAC GCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGT TTATCTGTTTTCATA TERM 2221 1780681 - 1780717 + T 100 -19.7 -4.34859 | opp_overlap 1780680 1780679 1780688, overlap 1780688 ACGCAGTCTTAAACG CTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAG TTTATCTGTTTTCAT TERM 2222 1780688 - 1780710 + T 100 -10.6 -4.41177 | opp_overlap 1780680 1780679 1780688, overlap 1780681 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTATCTG TERM 2223 1780710 - 1780688 - T 100 -12.8 -4.17089 | opp_overlap 1780688 1780681, overlap 1780680 1780679 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTATCTG SpyM3_1762 1782429 - 1780789 - | hypothetical protein SpyM3_1763 1782676 - 1784175 + | putative dipeptidase TERM 2224 1784265 - 1784239 - T 100 -16.8 -5.15969 | opp_overlap 1784242 GCTGAAGTCAAAAAA TAAGGTCTCACA CTT TGTGAGACCTTA TCGGTATAGGAGGGG TERM 2225 1784242 - 1784262 + T 100 -14.1 -3.39327 | opp_overlap 1784239 GAAGTCAAAAAATAA GGTCTCACA CTT TGTGAGACC TTATCGGTATAGGAG SpyM3_1764 1785164 - 1784898 - | hypothetical protein TERM 2226 1785303 - 1785345 + r 77 -5 -5.1861 | opp_overlap 1785306, overlap 1785306 ATATCACAACTAAAA AAACAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTGTTC TTTTTTCATAGTAAG TERM 2227 1785342 - 1785306 - R 93 -7.4 -5.68023 | opp_overlap 1785303 1785306 TCACAACTAAAAAAA CAAAGATGGGATATCA TGAGT CGAAATCCAATCTTTG TTCTTTTTTCATAGT TERM 2228 1785306 - 1785342 + r 80 -6.7 -4.68456 | opp_overlap 1785306, overlap 1785303 TCACAACTAAAAAAA CAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTG TTCTTTTTTCATAGT groEL 1787046 - 1785415 - | chaperonin GroEL groES 1787372 - 1787082 - | co-chaperonin GroES TERM 2229 1787403 - 1787439 + r 100 -13.4 -3.59658 | gap 1, opp_overlap 1787397 1787407, overlap 1787407 TAAAAGAATCTTTAG TAAAGTTAGCACTC-AT GTTC ATCGAGTGCTAACTTTA TATTCTATTTTATCA TERM 2230 1787407 - 1787435 + r 100 -9.8 -4.3821 | gap 1, opp_overlap 1787407, overlap 1787403 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2231 1787435 - 1787407 - R 83 -9.8 -3.75015 | gap 1, opp_overlap 1787407 1787403 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2232 1787481 - 1787506 + r 82 -4.1 -5.52986 | opp_overlap 1787481, overlap 1787484 ATAGTCAAGAAAAAA GAAGTTATTTT TATA AGAATAACCTC TTTTTTTGGTGACAT TERM 2233 1787506 - 1787481 - R 82 -4.1 -5.49234 | opp_overlap 1787481 1787484 ATAGTCAAGAAAAAA GAAGTTATTTT TATA AGAATAACCTC TTTTTTTGGTGACAT clpC 1789994 - 1787550 - | putative endopeptidase Clp ATP-binding chain C TERM 2234 1788664 - 1788674 + g 81 -5.4 -5.04987 | ATTGGTGTTAAAGTC TCAG GTG CTGA TTTTTTCACCATGTT ctsR 1790455 - 1789994 - | putative transcriptional regulator TERM 2235 1790603 - 1790626 + r 87 -9.6 -3.90901 | opp_overlap 1790603, overlap 1790598 GTAGAAATCAAAAAA GCAGTTGTTG TTTC CAACATCTGC TTCTCTTTAGTTACT TERM 2236 1790626 - 1790603 - R 100 -9.6 -5.42514 | opp_overlap 1790603 1790598 GTAGAAATCAAAAAA GCAGTTGTTG TTTC CAACATCTGC TTCTCTTTAGTTACT csp 1790854 - 1790651 - | putative cold-shock protein TERM 2237 1791082 - 1791059 - H 73 -7.5 -3.76125 | overlap 1791062 CTATGGTAAGGTAAA CAAGTAGAG ATTCAA CTCTACTCG CTCTCACATCACCGT TERM 2238 1791346 - 1791310 - H 88 -6 -5.75538 | gap 1, opp_overlap 1791310 1791309, overlap 1791304 CGCAAAAAATAAAAA CCTTGATTTAACAACGT TTTC ACGAAGTTAA-TCAAGG CTTGTTTTGTATATA ahpC 1791841 - 1792401 + | putative alkyl hydroperoxidase nox.3 1792422 - 1793954 + | putative NADH oxidase/alkyl hydroperoxidase TERM 2239 1793962 - 1794007 + T 100 -10.7 -5.02074 | opp_overlap 1793971, overlap 1793971 GTCAATAAAACAGCA TATTTAAAAGAAGTTTTGAGC TAAC GCTCAAAGCTTCTTTTTGAAA TTTTTTAAAGAATAC TERM 2240 1793998 - 1793971 - T 100 -11.4 -4.2535 | opp_overlap 1793962 1793971 ACAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTGAAATTTTTT TERM 2241 1793971 - 1793998 + T 100 -13.6 -4.77925 | opp_overlap 1793971, overlap 1793962 ACAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTGAAATTTTTT hutI 1795277 - 1794012 - | imidazolonepropionase TERM 2242 1796237 - 1796249 + G 70 -7.7 -3.76379 | opp_overlap 1796237 1796236 TGGCCCACAAGGAAT CGTTC ATG GAACG TTTAATACCCTCTTA hutU 1795569 - 1797599 + | urocanate hydratase SpyM3_1774 1797687 - 1798586 + | glutamate formiminotransferase SpyM3_1775 1798597 - 1799223 + | formiminotetrahydrofolate cyclodeaminase fhs.2 1799241 - 1800914 + | formate--tetrahydrofolate ligase TERM 2243 1801054 - 1801043 - g 74 -4.4 -4.95155 | opp_overlap 1801043, overlap 1801037 TGGAGATTACAAAAA GAGA GAAT TCTC TTATCGCCTCTCAAA TERM 2244 1801517 - 1801477 - g 71 -7.6 -3.90112 | gap 1, opp_overlap 1801481 1801482 1801512, overlap 1801480 TTTGCCTCAATCAAA CAAGCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-CTTA TGGTATAAGACTTAG TERM 2245 1801514 - 1801480 - g 73 -7.1 -4.0825 | gap 1, opp_overlap 1801481 1801482 1801512, overlap 1801477 GCCTCAATCAAACAA GCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-C TTATGGTATAAGACT SpyM3_1777 1800936 - 1801532 + | hypothetical protein SpyM3_1778 1801752 - 1803095 + | putative cationic amino acid transporter protein TERM 2246 1803873 - 1803851 - g 71 -7.6 -3.86346 | CCATTCGCCCACAAA GCGGCCAGTT GGC AACAGCCCGC AATATCCGAAACCTC hutH 1803106 - 1804647 + | histidine ammonia-lyase TERM 2247 1804674 - 1804699 + F 71 -7.5 -3.61178 | CTTCTTTAACTGAGA GGGGCTGTGGC AGAG GTCATGGCCTC TTTAGACTAACTAAC hutG 1804834 - 1805820 + | formimidoylglutamase TERM 2248 1805849 - 1805818 - T 87 -13.2 -2.85013 | opp_overlap 1805823, overlap 1805823 ATGGCACAACATAAC TAAAACCCTCTGAT GTGA ATCAGAGGGTTTTC CTTAGCTTTTAGCAG TERM 2249 1805844 - 1805823 - T 100 -13.1 -4.57218 | opp_overlap 1805823, overlap 1805818 ACAACATAACTAAAA CCCTCTGAT GTGA ATCAGAGGG TTTTCCTTAGCTTTT TERM 2250 1805823 - 1805844 + T 100 -13.1 -4.48175 | opp_overlap 1805823 1805818 ACAACATAACTAAAA CCCTCTGAT GTGA ATCAGAGGG TTTTCCTTAGCTTTT SpyM3_1781 1808925 - 1805851 - | putative regulatory protein TERM 2251 1806488 - 1806508 + g 73 -8.3 -3.6502 | opp_overlap 1806495 AAGTCAATCGACTGT TGAAGCAGA CGC TCTGCCTCA TTTAACTCCCCAATA TERM 2252 1809469 - 1809451 - g 74 -3.9 -5.14563 | gap 1, opp_overlap 1809455, overlap 1809455 1809466 GTTGGTACTAAAAAA CAAGCTGC TGAA GCAG-TTG CTGACGAAGCAACGC TERM 2253 1809637 - 1809625 - g 71 -6.3 -4.15044 | GTTCTTCCTAAGAAA GAAGT TGC ACTTC TTAACAAACAACGCG TERM 2254 1809775 - 1809763 - g 76 -3.3 -5.23016 | opp_overlap 1809763 AAAGAAGCTAAAAAA CTTGG TAT CCCAG TTGTAGCGATGGTTG rpsB 1809229 - 1809996 + | 30S ribosomal protein S2 tsf 1810130 - 1811170 + | elongation factor Ts TERM 2255 1811223 - 1811198 - T 71 -3.2 -5.11033 | opp_overlap 1811198, overlap 1811200 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTGTCAA TERM 2256 1811198 - 1811223 + T 89 -7.6 -5.24796 | opp_overlap 1811198 1811200 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTGTCAA TERM 2257 1811263 - 1811293 + T 77 -5.4 -4.91109 | opp_overlap 1811266, overlap 1811264 1811266 CAATAAGGAAGCAAA AAACTGATCCTGTG TTT CACAGAATCAGTCA TTTTTATAATCACAG TERM 2258 1811264 - 1811292 + T 77 -8.9 -3.54183 | opp_overlap 1811266, overlap 1811263 1811266 AATAAGGAAGCAAAA AACTGATCCTGTG TTT CACAGAATCAGTC ATTTTTATAATCACA TERM 2259 1811290 - 1811266 - T 100 -13.7 -5.32565 | opp_overlap 1811264 1811263 1811266 TAAGGAAGCAAAAAA CTGATCCTGTG TTT CACAGAATCAG TCATTTTTATAATCA TERM 2260 1811266 - 1811290 + T 89 -11.5 -3.34102 | opp_overlap 1811266, overlap 1811264 1811263 TAAGGAAGCAAAAAA CTGATCCTGTG TTT CACAGAATCAG TCATTTTTATAATCA pepO 1813231 - 1811336 - | putative endopeptidase O TERM 2261 1812497 - 1812483 - G 77 -6.4 -4.57341 | overlap 1812484 AATTCTGTCCAAAAA CGTTCC TCA GGAACA ATAACCTTGTCAGGT TERM 2262 1813441 - 1813403 - R 83 -10.4 -3.28712 | opp_overlap 1813406 1813412, overlap 1813406 1813412 CTTTTTTCGTGACAA TCACCAAAAGTCTGAGGC CTA ACCTCAGGCTTTTAGTTA GTTTTCAGCTAAGAT TERM 2263 1813406 - 1813438 + r 90 -11.4 -3.68366 | opp_overlap 1813403 1813406 1813412, overlap 1813412 TTTTCGTGACAATCA CCAAAAGTCTGAGG CCTAA CCTCAGGCTTTTAG TTAGTTTTCAGCTAA TERM 2264 1813438 - 1813406 - R 84 -12.1 -2.82623 | opp_overlap 1813406 1813412, overlap 1813403 1813412 TTTTCGTGACAATCA CCAAAAGTCTGAGGC CTA ACCTCAGGCTTTTAG TTAGTTTTCAGCTAA TERM 2265 1813432 - 1813412 - R 81 -7.5 -4.37527 | opp_overlap 1813412 1813406, overlap 1813406 1813403 TGACAATCACCAAAA GTCTGAGGC CTA ACCTCAGGC TTTTAGTTAGTTTTC TERM 2266 1813412 - 1813432 + r 89 -9 -4.5528 | opp_overlap 1813406 1813403 1813412, overlap 1813406 TGACAATCACCAAAA GTCTGAGG CCTAA CCTCAGGC TTTTAGTTAGTTTTC dexS 1815067 - 1813439 - | putative dextran glucosidase TERM 2267 1815116 - 1815088 - R 90 -11.2 -3.63744 | gap 1, opp_overlap 1815088 1815089 1815090, overlap 1815086 1815089 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAA-C GTTTTCTTCTAGTAA TERM 2268 1815088 - 1815117 + r 83 -7.9 -4.81212 | opp_overlap 1815088 1815086 1815089, overlap 1815089 1815090 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAACG TTTTCTTCTAGTAAA TERM 2269 1815116 - 1815089 - R 83 -11.4 -2.78032 | opp_overlap 1815089 1815088 1815090, overlap 1815088 1815086 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTTCTAGTAA TERM 2270 1815089 - 1815116 + r 89 -11.4 -3.48004 | opp_overlap 1815088 1815086 1815089, overlap 1815088 1815090 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTTCTAGTAA TERM 2271 1815090 - 1815115 + r 95 -14.9 -2.68079 | opp_overlap 1815088 1815089 1815086, overlap 1815089 1815088 CCTCCCTAAAATAGT TTCAGGAACTG ATCT CAGTTCCTGAA CGTTTTCTTCTAGTA SpyM3_1786 1817158 - 1815134 - | putative PTS system enzyme II SpyM3_1787 1817369 - 1818082 + | putative transcriptional repressor TERM 2272 1818088 - 1818122 + T 95 -8.9 -5.12068 | gap 2, opp_overlap 1818095, overlap 1818091 1818095 ACCAAAATAAAGACA GAAAA--AAGCCTTGCA AAA TGCAAGGCTTGCTTTTC TTTTTCTTGACTCTG TERM 2273 1818091 - 1818117 + T 93 -8 -5.42605 | opp_overlap 1818095, overlap 1818088 1818095 AAAATAAAGACAGAA AAAAGCCTTGCA AAA TGCAAGGCTTGC TTTTCTTTTTCTTGA TERM 2274 1818095 - 1818113 + T 100 -13.2 -3.96867 | opp_overlap 1818095, overlap 1818091 1818088 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC TERM 2275 1818113 - 1818095 - T 100 -13.2 -5.51046 | opp_overlap 1818095 1818091 1818088 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC SpyM3_1788 1818599 - 1818360 - | hypothetical protein TERM 2276 1818669 - 1818685 + H 74 -2.2 -5.42259 | opp_overlap 1818661 CGATAAGGCCGTTTC TACGGG ACAAG CCGGTA TTTTTTTCAGCATAG TERM 2277 1819571 - 1819559 - g 79 -4.8 -5.0538 | overlap 1819565 CCTTACCTCAAAAAA CACC AAGAA GGTG CTCCAGGCTTAGCCT SpyM3_1789 1818884 - 1819648 + | hypothetical protein TERM 2278 1819838 - 1819817 - g 72 -4.5 -4.68655 | gap 1, overlap 1819821 CAACCGCAAAAGAAA TGACGATCCC TAA GGAATC-TCA CCCACACCTCCTTCC TERM 2279 1819961 - 1819951 - g 79 -6.8 -4.64763 | GCAGCTAAAAAAGAA CAGC AAC GCTG GCAAGACATGGCCTC TERM 2280 1820382 - 1820370 - g 72 -3.3 -5.06451 | opp_overlap 1820370 1820371, overlap 1820371 CACCATTTCAAAAAA GGCAC GAG GTGCA TTTCTCACTGCCTGT SpyM3_1790 1819783 - 1820514 + | hypothetical protein TERM 2281 1820499 - 1820526 + T 76 -10 -2.80512 | opp_overlap 1820506, overlap 1820499 1820506 TGAATTTGTCTATAT CAAAAAAGAGGC CTAG GCCTCTTTTTTA GTCTTTATTCACAAT TERM 2282 1820499 - 1820527 + T 82 -9.8 -3.68725 | gap 1, opp_overlap 1820506, overlap 1820499 1820506 TGAATTTGTCTATAT C-AAAAAAGAGGC CTAG GCCTCTTTTTTAG TCTTTATTCACAATT TERM 2283 1820506 - 1820519 + T 90 -8.1 -5.34055 | opp_overlap 1820506, overlap 1820499 1820499 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT TERM 2284 1820519 - 1820506 - T 90 -8.1 -5.21709 | opp_overlap 1820506 1820499 1820499 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT nrdG 1821302 - 1820688 - | putative anaerobic ribonucleotide reductase activator SpyM3_1792 1821811 - 1821317 - | hypothetical protein SpyM3_1793 1822755 - 1821820 - | putative oxidoreductase TERM 2285 1821873 - 1821861 - G 77 -7.7 -4.30987 | opp_overlap 1821857 ACTCCCCATAAGAAA GCTGA GAG TCAGC AATCTGTTGACAAAT TERM 2286 1822407 - 1822420 + g 77 -5.3 -4.90778 | opp_overlap 1822399 TGTTAAATCCTGCCA TCAGA AAAG TCTGA TTTTCTTTGGCTAAG TERM 2287 1823067 - 1823037 - R 93 -10.7 -4.06533 | opp_overlap 1823042, overlap 1823042 GAAACCATTAAACAA TAAAAGATTGCTT GCATG AAGCAACCTTTTA AGCATATCATATTTC TERM 2288 1823062 - 1823042 - R 83 -6.2 -5.02606 | opp_overlap 1823042, overlap 1823037 CATTAAACAATAAAA GATTGCTT GCATG AAGCAACC TTTTAAGCATATCAT nrdD 1825310 - 1823112 - | anaerobic ribonucleoside triphosphate reductase TERM 2289 1823398 - 1823412 + g 71 -5 -4.63218 | overlap 1823395 TAGTCCCAAACCGCT TCCAAG GCC TTTGGA TTTTGTTGCAAAACA TERM 2290 1825400 - 1825356 - R 95 -9 -5.68023 | gap 1, opp_overlap 1825354 1825356 1825360 CGACAACTAAAAAAA TCAATATATTGTG-TCAAG TTTTTTTG CTCGAACACAATATATTGA TATTAAATTACTTTT SpyM3_1795 1826967 - 1825408 - | hypothetical protein TERM 2291 1826483 - 1826473 - G 73 -6.8 -4.2586 | opp_overlap 1826472 CGATATTAATATAAA TGGC ATA GCCA GTTGAGTAGGATACA TERM 2292 1827353 - 1827339 - R 86 -5.7 -5.6473 | opp_overlap 1827338 1827339, overlap 1827331 ATAACATTAAAAAAA TAGCC CTCAC GGCTA CTTTTTAACATAGTG SpyM3_1796 1827685 - 1827380 - | hypothetical protein SpyM3_1797 1828107 - 1827697 - | Holliday junction resolvase-like protein TERM 2293 1827856 - 1827842 - G 70 -8.6 -3.31144 | opp_overlap 1827847 1827855, overlap 1827846 CGTTCATCTTGATAA TGGACT GGA AGTCCA AAGAGGTGCTCTATG SpyM3_1798 1828382 - 1828113 - | hypothetical protein TERM 2294 1828480 - 1828492 + r 78 -7.7 -4.13767 | opp_overlap 1828480 AGGTATTTAAAAAAA GCTCT ACA AGAGC TTTTAGAGTGCAGCA TERM 2295 1828492 - 1828480 - R 93 -7.7 -5.47821 | opp_overlap 1828480 AGGTATTTAAAAAAA GCTCT ACA AGAGC TTTTAGAGTGCAGCA TERM 2296 1828505 - 1828518 + r 70 -8.1 -3.29187 | overlap 1828501 1828500 1828498 AGCTTTTAGAGTGCA GCACG TAAT CGTGC TTCAGTATTTTCAAT spxA 1828893 - 1828495 - | transcriptional regulator Spx TERM 2297 1828836 - 1828848 + g 77 -7.7 -4.1711 | GCTTATGGGCATTTA GCCAA GTT TTGGC TTTCTTGCAGCTCGT TERM 2298 1828957 - 1828972 + r 100 -7.6 -5.79588 | opp_overlap 1828957 1828955, overlap 1828948 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2299 1828972 - 1828957 - R 71 -7.6 -3.5511 | opp_overlap 1828948 1828957, overlap 1828955 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2300 1829165 - 1829180 + r 73 -4.6 -4.88228 | opp_overlap 1829167, overlap 1829167 AAAATACATTTTAAA AAGCCC TGAA GGGCTC TTTTTAATCTTCAAT TERM 2301 1829167 - 1829178 + r 73 -7.2 -4.05583 | opp_overlap 1829167, overlap 1829165 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA TERM 2302 1829178 - 1829167 - R 83 -7.2 -4.6644 | opp_overlap 1829165 1829167 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA recA 1830164 - 1829184 - | recombinase A cinA 1831680 - 1830409 - | competence damage-inducible protein A TERM 2303 1831756 - 1831730 - R 95 -8.9 -5.15634 | opp_overlap 1831730, overlap 1831750 CATTTTATCAAAAAA TCTTCCAATTC ACGAA GAATTAGAAGA TTCTATTGAAAACAC tag 1832309 - 1831749 - | DNA-3-methyladenine glycosylase ruvA 1832915 - 1832319 - | Holliday junction DNA helicase motor protein TERM 2304 1832508 - 1832524 + g 70 -9.5 -2.73243 | overlap 1832507 GGTATGACCAGTCTC TTGTGGA GCC TCCACAA ATTTGCCAGCTAAGT lmrP 1834137 - 1832917 - | putative integral membrane protein TERM 2305 1833393 - 1833381 - G 70 -9.1 -3.20349 | overlap 1833379 CTTGGAAACCTAACA CAGCC GTT GGCTG AAAATACAGTTTCAA mutL 1836130 - 1834148 - | DNA mismatch repair protein TERM 2306 1835693 - 1835683 - G 79 -5.4 -5.00616 | opp_overlap 1835672 1835683 GCGTGTTGTAAAAAA GGTT TTC AACC TTAATTTTGGTTCCA TERM 2307 1836213 - 1836236 + r 88 -7.5 -5.0925 | opp_overlap 1836213 TTGACAGAACAAAAA GATGCTTTC TATATT GAAGGCATC TTTTTCATTTTCAGC TERM 2308 1836236 - 1836213 - R 82 -5.3 -5.24796 | opp_overlap 1836213 TTGACAGAACAAAAA GATGCTTTC TATATT GAAGGCATC TTTTTCATTTTCAGC mutS.2 1838814 - 1836259 - | DNA mismatch repair protein TERM 2309 1836659 - 1836618 - G 100 -15.5 -3.25823 | gap 1, opp_overlap 1836620, overlap 1836620 GCGTTGCTACATGAA CATTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAATT CATGATAATGCGTTG TERM 2310 1836657 - 1836620 - G 100 -18.1 -3.19602 | gap 1, opp_overlap 1836620, overlap 1836618 GTTGCTACATGAACA TTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2311 1836620 - 1836657 + g 100 -18.1 -3.23395 | gap 1, opp_overlap 1836620 1836618 GTTGCTACATGAACA TTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2312 1838779 - 1838747 - G 80 -2.1 -5.54079 | gap 1, opp_overlap 1838747 1838750 CTAAAAAGCAAAAAA GCATCTGGATAATC TTTTTT GATG-TCCAGATAC TGTTGCATTCCAGGA SpyM3_1807 1839007 - 1838801 - | hypothetical protein ahrC 1839587 - 1839150 - | putative arginine repressor argS 1839878 - 1841569 + | arginyl-tRNA synthetase TERM 2313 1841582 - 1841611 + F 100 -11.6 -5.5208 | opp_overlap 1841582 1841579 1841586 TAAGTAATAACATTA CTAAGGCTGTCA CATTTA TGACAGTCTTAG TTTTTTATATTATAA TERM 2314 1841611 - 1841582 - f 76 -10.1 -2.88074 | opp_overlap 1841582, overlap 1841579 1841586 TAAGTAATAACATTA CTAAGGCTGTCAC ATTT ATGACAGTCTTAG TTTTTTATATTATAA SpyM3_1810 1841657 - 1841965 + | hypothetical protein TERM 2315 1841994 - 1841963 - T 93 -9.7 -4.2717 | opp_overlap 1841963 1841969, overlap 1841969 AGTAGGGGACCAAAA TAAAAATACAGGC TGTTTG ACCTGTATTTTTA TTTATCATAATTTCT TERM 2316 1841963 - 1841994 + T 82 -9 -4.04811 | opp_overlap 1841963 1841969, overlap 1841969 AGTAGGGGACCAAAA TAAAAATACAGG CTGTTTGA CCTGTATTTTTA TTTATCATAATTTCT TERM 2317 1841969 - 1841988 + T 79 -3.6 -5.40464 | opp_overlap 1841969 1841963, overlap 1841963 GGACCAAAATAAAAA TACAGG CTGTTTGA CCTGTA TTTTTATTTATCATA TERM 2318 1841988 - 1841969 - T 82 -4.3 -5.50723 | opp_overlap 1841963 1841969, overlap 1841963 GGACCAAAATAAAAA TACAGGC TGTTTG ACCTGTA TTTTTATTTATCATA SpyM3_1811 1842864 - 1841992 - | hypothetical protein SpyM3_1812 1843785 - 1842907 - | hypothetical protein SpyM3_1813 1844746 - 1843805 - | hypothetical protein TERM 2319 1844035 - 1844058 + g 75 -3 -5.18643 | overlap 1844036 TCACACGCTCTGGAT GGCTGGTAAC AATA GTTGCCTGCA TTTTCTTTTGCTTGG TERM 2320 1844611 - 1844641 + g 74 -4 -5.09762 | opp_overlap 1844605 1844614, overlap 1844613 1844614 TAGAGAGAATGCCAT AAAGCAGAGAAG CCGAAAT CTTCTCTGCATA TTTTTCTCTTGAAAT TERM 2321 1844613 - 1844639 + g 73 -6.6 -4.17211 | opp_overlap 1844605 1844614, overlap 1844611 1844614 GAGAGAATGCCATAA AGCAGAGAAG CCGAAAT CTTCTCTGCA TATTTTTCTCTTGAA TERM 2322 1844614 - 1844638 + g 75 -10.1 -3.09242 | opp_overlap 1844605 1844614, overlap 1844613 1844611 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA TERM 2323 1844638 - 1844614 - G 84 -10.1 -3.94381 | opp_overlap 1844614 1844613 1844611, overlap 1844605 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA aspS 1846487 - 1844739 - | aspartyl-tRNA synthetase TERM 2324 1845576 - 1845594 + g 83 -11.8 -3.21593 | overlap 1845574 CTTGAAGTCAATTCC CTTGACAG TTA CTGTCAAG TCTTGTAAAAGCATC TERM 2325 1846727 - 1846764 + r 100 -12.2 -4.38129 | gap 1, opp_overlap 1846727 CTTACAGAAAACAAA CAGGTGCAAC-TCCCTT CTAAA AAGGGAAGTTACACCTG TTTTAGTGATTATCT TERM 2326 1846764 - 1846727 - R 100 -15.1 -4.83243 | gap 1, opp_overlap 1846727 CTTACAGAAAACAAA CAGGTGCAAC-TCCCTTC TAA AAAGGGAAGTTACACCTG TTTTAGTGATTATCT hisS 1848105 - 1846825 - | histidyl-tRNA synthetase TERM 2327 1848259 - 1848230 - H 84 -3.7 -5.61881 | opp_overlap 1848235, overlap 1848231 TTGTAAAAATAAAAA GTTTTGTCAAGTA ACTT TACTTTACAAAAA AGATATGTTATCATA TERM 2328 1848258 - 1848231 - H 73 -7.2 -3.95502 | opp_overlap 1848235, overlap 1848230 TGTAAAAATAAAAAG TTTTGTCAAGTA ACTT TACTTTACAAAA AAGATATGTTATCAT TERM 2329 1848271 - 1848261 - H 76 -4 -5.26316 | overlap 1848263 TTACTTTACAAAAAA GATA TGT TATC ATAGTGAAGTTGATG rpmF 1848325 - 1848507 + | 50S ribosomal protein L32 rpmG 1848523 - 1848672 + | 50S ribosomal protein L33 TERM 2330 1848813 - 1848839 + F 100 -10.9 -5.5762 | opp_overlap 1848813 GGATATTGAAGTTAA GCCCTGTTATC ATTTG GATGGCAGGGC TTTTTTATATTTGGT cadD 1848953 - 1849567 + | putative cadmium resistance protein cadX 1849579 - 1849917 + | putative cadmium efflux system accessory protein SpyM3_1820 1849968 - 1850891 + | hypothetical protein SpyM3_1821 1850957 - 1851709 + | hypothetical protein SpyM3_1822 1851706 - 1852308 + | hypothetical protein TERM 2331 1852315 - 1852353 + T 84 -5.3 -5.55695 | gap 2 AAGCGTTAATTCCTT GGGGCTG--TGGCTTGCGT TAA GCAAAAGCCAGACAGCCCC TTTTTTATATTCTTA TERM 2332 1852578 - 1852623 + T 77 -8.5 -3.53091 | opp_overlap 1852583 1852588, overlap 1852580 1852581 1852588 AAGTAAAATAATTGA GATGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCGTG TTTAAAAAAACAAAT TERM 2333 1852580 - 1852621 + T 87 -11.1 -3.34398 | opp_overlap 1852583 1852588, overlap 1852578 1852581 1852588 GTAAAATAATTGAGA TGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCG TGTTTAAAAAAACAA TERM 2334 1852581 - 1852620 + T 86 -12.4 -2.60496 | opp_overlap 1852583 1852588, overlap 1852580 1852578 1852588 TAAAATAATTGAGAT GAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTC GTGTTTAAAAAAACA TERM 2335 1852613 - 1852588 - T 74 -6.2 -4.51378 | opp_overlap 1852581 1852580 1852578 1852588, overlap 1852583 ATTGAGATGAGAAAA GCCTATGAAA TGAACG TTTCAAAGGC TTTTTTCGTGTTTAA TERM 2336 1852588 - 1852613 + T 89 -6.9 -5.32699 | opp_overlap 1852588 1852583, overlap 1852581 1852580 1852578 ATTGAGATGAGAAAA GCCTATGAAAT GAAC GTTTCAAAGGC TTTTTTCGTGTTTAA SpyM3_1823 1852948 - 1852784 - | hypothetical protein SpyM3_1824 1853434 - 1853276 - | hypothetical protein TERM 2337 1853318 - 1853334 + g 74 -4.5 -4.88405 | overlap 1853313 1853327 1853328 ATAATTATCGTAAGG TTTACAG TCT TTGTAAA TTTTATTTACAACTT TERM 2338 1853858 - 1853875 + G 73 -7.7 -3.95772 | CACAGAGACAAAGCT GACTGGC TATG GCTAGTC TTTACCTTTGTTATT TERM 2339 1854116 - 1854126 + G 84 -6.8 -4.84761 | overlap 1854112 ATCGGAGGAGTCCTA GCCA TCT TGGC TTTTTCTAAAAGTAT SpyM3_1825 1853519 - 1854361 + | hypothetical protein TERM 2340 1854396 - 1854385 - T 70 -4.4 -4.82901 | GTTTGTTGACAAAAA GTTG ACGC CAAC AAACTAGTGCTCTAT TERM 2341 1854414 - 1854441 + T 100 -9.2 -5.29846 | ACTAGTGCTCTATCT CCCCTTAGATTT TTCA ATATCTGAGGGG TTTTTCTTTGCAATT SpyM3_1826 1854830 - 1854408 - | hypothetical protein SpyM3_1827 1855116 - 1854961 - | hypothetical protein SpyM3_1828 1855256 - 1855582 + | hypothetical protein SpyM3_1829 1855569 - 1856156 + | hypothetical protein TERM 2342 1856589 - 1856565 - g 77 -5 -5.00616 | opp_overlap 1856565, overlap 1856568 CTGTTCCTGAAAAAA CTAGCCTCAA TGAAG TTAAGGCAAG TAATGTCCCACATAC SpyM3_1830 1856153 - 1857232 + | hypothetical protein TERM 2343 1857254 - 1857272 + T 75 -8.2 -3.79906 | opp_overlap 1857254 1857265 CAAGACAATAAAAAA CTTGACAG AAA TTGTCAAG TTATTGTCAAAATAA TERM 2344 1857272 - 1857254 - T 93 -7.5 -5.64304 | opp_overlap 1857254, overlap 1857265 CAAGACAATAAAAAA CTTGACA GAAAT TGTCAAG TTATTGTCAAAATAA TERM 2345 1857326 - 1857297 - T 83 -5 -5.57729 | opp_overlap 1857297 AAATAAGACAAAAAA CAGCATCTAGTG TAACTG CCTTAGATGCTG TTTTTTTTTGAGGTT TERM 2346 1857297 - 1857326 + T 100 -7.9 -6.10489 | opp_overlap 1857297 AAATAAGACAAAAAA CAGCATCTAGTGT AACT GCCTTAGATGCTG TTTTTTTTTGAGGTT SpyM3_1831 1859622 - 1857349 - | hypothetical protein TERM 2347 1859738 - 1859708 - H 90 -4 -5.84432 | opp_overlap 1859712, overlap 1859709 1859710 1859712 TACAAGAGAAAAAAA TTCACTTTTGGACA TTA TGTCTAAAAGTGTT CAAAAGGAGAGATGG TERM 2348 1859737 - 1859709 - H 76 -7.5 -4.08219 | opp_overlap 1859712, overlap 1859708 1859710 1859712 ACAAGAGAAAAAAAT TCACTTTTGGACA TTA TGTCTAAAAGTGT TCAAAAGGAGAGATG TERM 2349 1859736 - 1859710 - H 83 -11 -3.02491 | opp_overlap 1859712, overlap 1859709 1859708 1859712 CAAGAGAAAAAAATT CACTTTTGGACA TTA TGTCTAAAAGTG TTCAAAAGGAGAGAT TERM 2350 1859712 - 1859734 + H 77 -10 -3.01712 | opp_overlap 1859712 1859710 1859709 1859708 AGAGAAAAAAATTCA CTTTTGGACA TTA TGTCTAAAAG TGTTCAAAAGGAGAG SpyM3_1832 1859757 - 1860290 + | TetR/AcrR family transcriptional regulator TERM 2351 1860428 - 1860398 - T 73 -9.2 -2.94218 | opp_overlap 1860400 1860406, overlap 1860406 ATTTGTTATGAGATA CAAAAAAAGCCTAT TAA ATAGGCTTTTTGTA AGTTTAATCTTAAAA TERM 2352 1860400 - 1860426 + T 75 -9.6 -2.71059 | opp_overlap 1860398 1860406, overlap 1860406 TTGTTATGAGATACA AAAAAAGCCTAT TAA ATAGGCTTTTTG TAAGTTTAATCTTAA TERM 2353 1860420 - 1860406 - T 95 -8.6 -5.76633 | opp_overlap 1860400 1860406, overlap 1860398 TGAGATACAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA TERM 2354 1860406 - 1860420 + T 95 -8.6 -4.94992 | opp_overlap 1860406 1860398, overlap 1860400 TGAGATACAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA rpsD 1861055 - 1860444 - | 30S ribosomal protein S4 TERM 2355 1861779 - 1861767 - R 100 -9.1 -5.28942 | TATTGTAAAGAAAAA GCCTC TAT GAGGC AAAAATCAATCTAAA SpyM3_1834 1862057 - 1861785 - | hypothetical protein dnaC 1863441 - 1862074 - | replicative DNA helicase TERM 2356 1863048 - 1863080 + g 91 -13.5 -2.62184 | opp_overlap 1863039 1863050 TTAAAATTTCATCAT AAGCTAGGTTGACAG ATT CTGTCAACCTAGCAA TAATATCACGCAACA TERM 2357 1863078 - 1863050 - G 100 -20.5 -3.43689 | opp_overlap 1863048, overlap 1863039 AAAATTTCATCATAA GCTAGGTTGACAG ATT CTGTCAACCTAGC AATAATATCACGCAA rplI 1863923 - 1863471 - | 50S ribosomal protein L9 SpyM3_1837 1865896 - 1863920 - | hypothetical protein TERM 2358 1864173 - 1864208 + g 85 -4.2 -5.67063 | gap 1, overlap 1864174 1864177 GACAGTATCGTATCT GCAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATGA TTTTTTTCTCCTGCA TERM 2359 1864174 - 1864207 + g 75 -7.7 -3.99153 | gap 1, overlap 1864173 1864177 ACAGTATCGTATCTG CAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATG ATTTTTTTCTCCTGC TERM 2360 1865835 - 1865815 - G 77 -10.5 -3.32844 | TTTTTGATTGCATAA TACTGACAC AAA GTGCCAGTA GTCCAAATAAAATCA TERM 2361 1865950 - 1865934 - R 84 -5.8 -5.34555 | TTATACCATAAAAAA GCCCTG AAATA CAGAGC TTCCACTTGCTTTGA gidA 1867884 - 1865986 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA SpyM3_1839 1868325 - 1868008 - | hypothetical protein TERM 2362 1868429 - 1868418 - R 73 -3.6 -5.04325 | overlap 1868419 GCTAAACCATAAAAA GGGC CAAA ACCC TAGAAGATTGCAGGA trmU 1870222 - 1869101 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2363 1869566 - 1869595 + g 72 -10.1 -2.65527 | overlap 1869565 1869564 AGTCATCATGCGACC TTTTTGTGCCGGT AAGT ACTGGCTCAAAAA CTGTTTGAAATTCTT TERM 2364 1870259 - 1870287 + H 74 -3.3 -5.21236 | opp_overlap 1870259 1870262, overlap 1870262 TAAGATAGAAAAAGA TAATCATCATATT ATG AATATTATGATTC TTTTTCTTATCAGTT TERM 2365 1870262 - 1870284 + H 72 -5 -4.68512 | opp_overlap 1870262 1870259, overlap 1870259 GATAGAAAAAGATAA TCATCATATT ATG AATATTATGA TTCTTTTTCTTATCA TERM 2366 1870412 - 1870425 + H 76 -2.5 -5.55769 | GGAATGCCAATCATT TTATT GCTC AATAA TTTTTTATTATAAAA sdhB 1870520 - 1871191 + | putative L-serine dehydratase beta subunit TERM 2367 1871722 - 1871744 + G 80 -10.6 -3.38812 | overlap 1871720 GCAGAAGTTGGTTCT GCAGCTGC TATGAGT GCAGCTGC TCTTGTTAAAGCAGC sdhA 1871203 - 1872075 + | putative L-serine dehydratase alpha subunit TERM 2368 1872431 - 1872468 + T 100 -14.5 -4.17556 | opp_overlap 1872436, overlap 1872436 AGACAATTAAATACC AAAAACCTATTGTTAGT AAAT ACTAACAATAGGTTTTA TTTCTTCCAGCTATG TERM 2369 1872436 - 1872463 + T 100 -14.4 -5.09762 | opp_overlap 1872436, overlap 1872431 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG TERM 2370 1872463 - 1872436 - T 100 -14.4 -4.946 | opp_overlap 1872436 1872431 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG SpyM3_1843 1873103 - 1872489 - | hypothetical protein TERM 2371 1873297 - 1873307 + r 74 -6.8 -4.39318 | opp_overlap 1873282 1873297, overlap 1873278 GTTCTGTATTGAACA GGAC TCA GTCC TTTTAGATTTCGTTC TERM 2372 1873430 - 1873390 - R 100 -9.2 -4.84642 | opp_overlap 1873402 1873409 CTCAAATGAAGAAAA GTACCTCAATCATTAGAT GTTGT ATCTAACTTTTGAGGTAC AATTCACTTCTTATA SpyM3_1844 1874274 - 1873474 - | putative ABC transporter membrane-spanning permease SpyM3_1845 1875109 - 1874267 - | cobalt transporter ATP-binding subunit SpyM3_1846 1875924 - 1875085 - | cobalt transporter ATP-binding subunit TERM 2373 1875175 - 1875191 + g 75 -9.5 -3.29263 | opp_overlap 1875177 ACCTTCTTCTTGAAG CATCTGT ACA ACAGATG TTGTAAAAGGGATAT TERM 2374 1875360 - 1875370 + g 79 -3.2 -5.4588 | CAGTCAGCTGGTAGT CGTC ACG GATG TTTTTTATAGTTTTA TERM 2375 1875851 - 1875864 + g 73 -2.3 -5.20606 | ACATGAAACGATACG CCATC TAAT GTTGG TTTTTCTTGGTCTTT pgsA 1876468 - 1875926 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase SpyM3_1848 1877507 - 1876482 - | hypothetical protein SpyM3_1849 1878852 - 1877557 - | hypothetical protein SpyM3_1850 1880098 - 1878854 - | hypothetical protein TERM 2376 1879690 - 1879700 + g 78 -2.6 -5.50499 | CTGACTCGATGTAGT TAAT CAA ATTA TTTTTTTCAGTCTCA hasA 1880498 - 1881757 + | hyaluronan synthase hasB 1881793 - 1883001 + | putative UDP-glucose 6-dehydrogenase TERM 2377 1884113 - 1884072 - g 100 -20.6 -5.01732 | opp_overlap 1884072 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA TERM 2378 1884072 - 1884113 + G 100 -20.6 -5.4148 | opp_overlap 1884072 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA hasC 1883183 - 1884097 + | putative UDP-glucose pyrophosphorylase SpyM3_1854 1884405 - 1884818 + | hypothetical protein recF 1884820 - 1885926 + | recombination protein F TERM 2379 1885973 - 1885927 - T 95 -14.8 -3.20382 | opp_overlap 1885941, overlap 1885940 1885941 TCTGATATTCACTAA TAACATCAAAAAAGGGTTCAGT TGA ACTGAGCCTTTTTTTGATATTA TGTGGCGATTAAGAT TERM 2380 1885960 - 1885940 - T 76 -3.9 -5.31545 | opp_overlap 1885941, overlap 1885927 1885941 AATAACATCAAAAAA GGGTTCAGT TGA ACTGAGCCT TTTTTTGATATTATG TERM 2381 1885941 - 1885959 + T 100 -9.6 -5.6473 | opp_overlap 1885941 1885940 1885927 ATAACATCAAAAAAG GGTTCAGT TGA ACTGAGCC TTTTTTTGATATTAT TERM 2382 1885959 - 1885941 - T 73 -7.4 -3.76487 | opp_overlap 1885941, overlap 1885940 1885927 ATAACATCAAAAAAG GGTTCAGT TGA ACTGAGCC TTTTTTTGATATTAT SpyM3_1856 1886815 - 1885982 - | putative transporter TERM 2383 1887025 - 1887003 - R 100 -12 -5.80817 | TTTAATATAAAAAAA GAGCTGGCAC AAT ATGCCAGCCC TTAAAGTTACTAAAT guaB 1888529 - 1887048 - | inositol-5-monophosphate dehydrogenase TERM 2384 1888704 - 1888729 + r 81 -10.7 -2.8805 | opp_overlap 1888727 AAAAAATTCATTTGG GTCTTATTTTT AATC AAAAATAAGAC TATATAAAACATAAT trsA 1889859 - 1888837 - | tryptophanyl-tRNA synthetase II TERM 2385 1889922 - 1889896 - H 83 -6.5 -4.84527 | opp_overlap 1889896, overlap 1889898 TTGATATAGCAAAAA GTCCCCACGCT ATTAA AACGTGAGGGC GTTATTACAAGTAAT TERM 2386 1890509 - 1890499 - g 70 -2.6 -5.07652 | TCTTGGAAAACAAAA TTTT ATT AAAA CACTTTATGGTTCTT SpyM3_1859 1890278 - 1891150 + | hypothetical protein SpyM3_1860 1891229 - 1892848 + | putative ABC transporter, ATP-binding protein TERM 2387 1892867 - 1892894 + F 90 -8.4 -5.1361 | opp_overlap 1892866, overlap 1892869 CTTATGATAAATGAG GTGGCTAAGAAG ATCT CTTCCTAGCCTC TTTTTTAAAATTTGT TERM 2388 1892869 - 1892892 + F 93 -9.6 -4.18259 | opp_overlap 1892866, overlap 1892867 TATGATAAATGAGGT GGCTAAGAAG ATCT CTTCCTAGCC TCTTTTTTAAAATTT TERM 2389 1894069 - 1894089 + G 80 -7.7 -4.37527 | opp_overlap 1894069, overlap 1894074 AAGAAGTGACTCAAA TAAAAGCAG GTT TTGCTTTTA TTTTCCTCATTATAC TERM 2390 1894074 - 1894084 + G 72 -3.2 -5.14626 | opp_overlap 1894069, overlap 1894069 GTGACTCAAATAAAA GCAG GTT TTGC TTTTATTTTCCTCAT SpyM3_1861 1892931 - 1895507 + | ABC transporter permease TERM 2391 1895597 - 1895556 - T 93 -14.1 -3.12432 | opp_overlap 1895557 1895562, overlap 1895562 AAATGAGTCAATATA CTAAAAGCATCTCAAATAT TCTA ATACTTGAGATGCTTTTAT CGATTTTACTAATAA TERM 2392 1895557 - 1895596 + T 100 -15.4 -2.78495 | opp_overlap 1895556 1895562, overlap 1895562 AATGAGTCAATATAC TAAAAGCATCTCAAATAT TCTA ATACTTGAGATGCTTTTA TCGATTTTACTAATA TERM 2393 1895591 - 1895562 - T 100 -13.1 -4.43213 | opp_overlap 1895562 1895557, overlap 1895556 GTCAATATACTAAAA GCATCTCAAATAT TCTA ATACTTGAGATGC TTTTATCGATTTTAC TERM 2394 1895562 - 1895591 + T 100 -10.9 -4.54477 | opp_overlap 1895556 1895562, overlap 1895557 GTCAATATACTAAAA GCATCTCAAATAT TCTA ATACTTGAGATGC TTTTATCGATTTTAC TERM 2395 1895980 - 1895962 - T 100 -10.4 -5.99154 | opp_overlap 1895961 1895960 TACTAAATAAAAAAA TCCTAAGA TTA TCTTAGGA AATATCTTATCACTC TERM 2396 1896093 - 1896079 - T 95 -5 -6.20267 | GGAAAAAGAAAAAAA TTGCCA AAA TGACAA TCGCGATAGTCCGTA SpyM3_1862 1897347 - 1896367 - | putative transposase TERM 2397 1897392 - 1897403 + r 74 -2.2 -5.4756 | AATTCTAGTATATCA GACG AACA TGTC TTTTTTGTTGCACTT TERM 2398 1897597 - 1897611 + r 95 -6.4 -5.88197 | opp_overlap 1897590 1897597 ATCAAAGATAAAAAA GCACTG TTT TAGTGC TTTTTTTGTATTTAC TERM 2399 1897611 - 1897597 - R 84 -5.7 -5.5762 | opp_overlap 1897597, overlap 1897590 ATCAAAGATAAAAAA GCACT GTTTT AGTGC TTTTTTTGTATTTAC SpyM3_1863 1898221 - 1897742 - | SPOUT methyltransferase superfamily protein TERM 2400 1898321 - 1898288 - H 89 -13.5 -2.71144 | opp_overlap 1898292 1898296 1898298, overlap 1898292 1898298 TATTTTTTTCAACTA CTAATAAAAACCTTT GTAC AAAGGTCTTTATTAG TAAAAAGAAAAGTAA TERM 2401 1898317 - 1898292 - H 73 -8.5 -3.27298 | opp_overlap 1898292 1898296 1898298, overlap 1898288 1898298 TTTTTCAACTACTAA TAAAAACCTTT GTAC AAAGGTCTTTA TTAGTAAAAAGAAAA TERM 2402 1898311 - 1898298 - H 79 -5.3 -5.16071 | opp_overlap 1898298 1898296 1898292, overlap 1898292 1898288 AACTACTAATAAAAA CCTTT GTAC AAAGG TCTTTATTAGTAAAA TERM 2403 1898328 - 1898360 + H 100 -19.5 -6.4275 | opp_overlap 1898328 1898333 CTTTATTAGTAAAAA GAAAAGTAATCCACA GGC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2404 1898360 - 1898328 - H 100 -19.5 -4.77036 | opp_overlap 1898328, overlap 1898333 CTTTATTAGTAAAAA GAAAAGTAATCCACA GGC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2405 1898355 - 1898333 - H 100 -13.6 -5.3104 | opp_overlap 1898328, overlap 1898328 TTAGTAAAAAGAAAA GTAATCCACA GGC TGTGGATTAC TTTTCTTTTTTTTAT degP 1898432 - 1899655 + | putative serine protease TERM 2406 1899688 - 1899716 + F 100 -17.7 -4.55093 | opp_overlap 1899680 1899690 1899695, overlap 1899695 TATTACATTTTATCA CATAAAACAGTCC AAA GGACTGTTTTATG TTTCTTATTCTATCC TERM 2407 1899714 - 1899690 - f 95 -14.5 -2.80443 | opp_overlap 1899688 1899695, overlap 1899680 1899695 TTACATTTTATCACA TAAAACAGTCC AAA GGACTGTTTTA TGTTTCTTATTCTAT TERM 2408 1899695 - 1899709 + F 100 -10 -4.91194 | opp_overlap 1899690 1899695, overlap 1899688 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT TERM 2409 1899709 - 1899695 - f 100 -10 -4.57353 | opp_overlap 1899695 1899688, overlap 1899690 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT spoJ 1899744 - 1900520 + | putative chromosome segregation protein