TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.607203 %AT, 1545959 nt, 10354 terms. Intergenic: 0.654023 %AT, H2T: 238543 nt, 1849 terms; T2T: 42560 nt, 940 terms; H2H: 73185 nt, 1089 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|71909814|ref|NC_007297.1| Streptococcus pyogenes MGAS5005, complete genome (length 1838554) TERM 1 1332 - 1312 - g 73 -6.9 -4.14392 | GCGCAAGTTGGAAAA TTTTACGGT GTT ACCGTCAAA GAAATTAAAGCTACT dnaA 202 - 1557 + | chromosomal replication initiation protein TERM 2 1847 - 1818 - g 70 -2.9 -5.1356 | opp_overlap 1806 1823, overlap 1820 TTTCATCAATAAAAA TTGAAGTCACTTC TACA GGAGTAACTTTAA CAGGGTCTAACGGTC TERM 3 2150 - 2160 + G 71 -6.8 -4.0896 | TTGAAGTCTATTATT GCTG AAA CAGC TTTTGCAGCCAGTTT dnaN 1712 - 2848 + | DNA polymerase III subunit beta TERM 4 2860 - 2873 + F 93 -3.8 -5.97979 | opp_overlap 2860 CTAAGTAAGAAAAAG CTCC CTTTTA GGAG TTTTTTTGTTATTAT M5005_Spy_0003 2923 - 3120 + | putative cytoplasmic protein M5005_Spy_0004 3450 - 4565 + | translation-associated GTPase TERM 5 5124 - 5150 + G 90 -8.8 -4.86731 | GCTATTTCGTTAACT CTTGACAGAGTT GTC AATGCTGTCAAG TTTTATTTACAAGAA pth 4635 - 5204 + | peptidyl-tRNA hydrolase TERM 6 6199 - 6185 - g 70 -8.6 -3.29626 | GAAGATTTACAGCAA GGAAAG GCT CTTTCC AATCTTAACTACTTT TERM 7 7262 - 7243 - g 70 -5.8 -4.32034 | overlap 7244 GCAGCATTATGAAAA CTTCAAAG CACG CTTTGAAA ATTACCCTGTTGAGG TERM 8 7502 - 7479 - g 70 -3.2 -4.95957 | overlap 7480 TAAAGGAATTAAAAA CTAAGGTTGA CGTC TTAACCTTAA CAGCTACTCCGATTC TERM 9 7860 - 7884 + G 72 -4.3 -4.67607 | opp_overlap 7862, overlap 7862 CAATCATCGAAACAG GAGTTGACATT TCT AATGTAAACAC TTTGTTTATTGAGAA trcF 5207 - 8710 + | transcription-repair coupling factor M5005_Spy_0007 8872 - 9144 + | heat shock protein 15 TERM 10 9327 - 9301 - g 76 -11.1 -2.74605 | opp_overlap 9299 TCTTGTCAAAAGTTA TGTTGATTTTG AAAAG CAAAATCAACA GGTGGTTAAATTAAA divIC 9131 - 9502 + | cell division protein M5005_Spy_0009 9499 - 9624 + | hypothetical protein TERM 11 10127 - 10102 - g 79 -6.9 -4.57569 | TTATTTGCTCAAAAA GTTCATGCCAC TCAA ATGGCACAAAC AAACCATGGAACTTA M5005_Spy_0010 9637 - 10923 + | beta-lactamase TERM 12 10971 - 10958 - g 88 -3.9 -5.72053 | TAATGAAATAAAAAA TAAAG CCTA CTTTA AAAATCATAGACATG TERM 13 11005 - 11033 + G 82 -6.1 -4.92363 | TAATAGCCGTATCTG GTGGAGTAGATTC AAT GAATTTATTGCAC TTTTTATACCTGTTT tilS 10920 - 12206 + | tRNA(Ile)-lysidine synthetase M5005_Spy_0012 12211 - 12753 + | hypoxanthine-guanine phosphoribosyltransferase TERM 14 13924 - 13894 - g 77 -4.8 -4.87389 | CATGCTAAAAATAAA CCACTTGCAAATGA CGT TAATTTGAAAGTAG TAGCCCAACAGACTC ftsH 12775 - 14754 + | cell division protein TERM 15 14801 - 14752 - f 93 -13.4 -3.33261 | gap 1, opp_overlap 14764, overlap 14764 TCTGAATCTGCAGAA TGAT-ATAAAAAAGCTGAACTTA TAGAT TAAGTTCAGCTTTTTTATCAACA CAATATCCTTGTAAA TERM 16 14764 - 14788 + F 100 -11.6 -5.24129 | opp_overlap 14752 14764 GAATGATATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA TERM 17 14788 - 14764 - f 100 -11.6 -5.42131 | opp_overlap 14764, overlap 14752 GAATGATATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA M5005_Spy_0014 15079 - 16470 + | amino acid permease M5005_Spy_0015 16945 - 16811 - | hypothetical protein TERM 18 17010 - 16996 - R 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 19 19293 - 19274 - R 91 -12.2 -3.62096 | opp_overlap 19273 19272 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 20 19985 - 19952 - R 71 -8.9 -3.03412 | overlap 19951 19974 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 21 23011 - 22997 - R 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 22 25294 - 25275 - R 91 -12.2 -3.62096 | opp_overlap 25274 25273 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 23 25986 - 25953 - R 71 -8.9 -3.03412 | overlap 25952 25975 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 24 29707 - 29719 + r 86 -5.5 -5.70829 | opp_overlap 29707 ATAAAGGGGAAAGAA GACGG TTA TCGTC TTTTTTTGTAATCTT M5005_Spy_0016 30249 - 30106 - | putative transposase sibA 31134 - 32330 + | secreted protein TERM 25 32342 - 32363 + F 100 -11.7 -4.90869 | opp_overlap 32338 CTAACATATTATTTA GGTTAGAAC AGTT GTTCTAACC TTTTTGATTACTCCT prsA.2 32583 - 33545 + | ribose-phosphate pyrophosphokinase TERM 26 33556 - 33578 + F 100 -9.9 -4.75174 | opp_overlap 33556 ATTAAACTTAACGAA GCCTGAGAT AATAG ATCTCGGGC TTTTTGACTTGAATA recO 33731 - 34486 + | DNA repair protein RecO plsX 34589 - 35596 + | putative glycerol-3-phosphate acyltransferase PlsX acpP.2 35589 - 35831 + | acyl carrier protein TERM 27 35835 - 35870 + F 100 -18 -3.53091 | opp_overlap 35838 35841 35847, overlap 35838 35841 35847 CGTTTGACTTAGTTA GAATAATAAAAAGAGC GTAA GCTCTTTTTATTATTC TTTAAAAACGAACCT TERM 28 35867 - 35838 - f 95 -13.9 -3.36878 | opp_overlap 35835 35838 35841 35847, overlap 35841 35847 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 29 35838 - 35867 + F 100 -13.9 -3.90744 | opp_overlap 35838 35841 35847, overlap 35835 35841 35847 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 30 35841 - 35864 + F 93 -11.2 -4.08557 | opp_overlap 35841 35838 35847, overlap 35838 35835 35847 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 31 35864 - 35841 - f 90 -11.2 -3.82378 | opp_overlap 35838 35835 35841 35847, overlap 35838 35847 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 32 35847 - 35858 + F 86 -5.8 -5.40014 | opp_overlap 35847 35841 35838, overlap 35841 35838 35835 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT TERM 33 35858 - 35847 - f 84 -5.8 -5.34365 | opp_overlap 35841 35838 35835 35847, overlap 35841 35838 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT M5005_Spy_0022 35952 - 36686 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 34 38582 - 38562 - g 72 -4.7 -4.66163 | ACCGTTACTGAAAAA CCAAATCTT GTC ATGACTTGG AATGGCGAAATCATC M5005_Spy_0023 36762 - 40535 + | phosphoribosylformylglycinamidine synthase TERM 35 40558 - 40532 - f 77 -9.6 -3.13177 | opp_overlap 40539, overlap 40539 ATACTTTACAGGGAA GTAAAAAGGTTC AGT GAACCTTTTTAG CCCTCGCCTTGAATT TERM 36 40539 - 40551 + F 82 -7.7 -4.59773 | opp_overlap 40539 40532 ACAGGGAAGTAAAAA GGTTC AGT GAACC TTTTTAGCCCTCGCC TERM 37 40551 - 40539 - f 88 -7.7 -4.89009 | opp_overlap 40539, overlap 40532 ACAGGGAAGTAAAAA GGTTC AGT GAACC TTTTTAGCCCTCGCC purF 40696 - 42150 + | amidophosphoribosyltransferase TERM 38 42277 - 42256 - g 90 -3.8 -6.01369 | gap 1 GAAAGAATAAAAAAA CACGTTGCT CGTAC AG-AACGTG CGGGAGTCATGGGAG purM 42178 - 43200 + | phosphoribosylaminoimidazole synthetase TERM 39 43253 - 43225 - f 73 -9 -3.15008 | overlap 43223 TTTTATAAGAAAGGA GTGTTTAGTTAG TTTGC CTAACTGAACAC GGGATTAAATTTCTA purN 43368 - 43922 + | phosphoribosylglycinamide formyltransferase TERM 40 44529 - 44516 - g 79 -6.7 -4.58395 | CTCAGCCGCTAAAAA TCACG CTAG CGTGA CCGTTGTGGTTGACC TERM 41 45620 - 45606 - g 74 -6.4 -4.42062 | opp_overlap 45605, overlap 45602 GACGCCGCAAACAAA CATGGC TTG ACCATG ATCTTCACAGGTGTG purH 44106 - 45653 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 42 45682 - 45662 - T 93 -6.2 -5.84381 | opp_overlap 45662 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTATTAAAAGA TERM 43 45662 - 45682 + T 79 -4 -5.4505 | opp_overlap 45662 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTATTAAAAGA M5005_Spy_0028 46835 - 45711 - | autolysin TERM 44 46520 - 46497 - G 76 -9 -3.72695 | gap 1, opp_overlap 46495 46493 46497 AGCGTTTTTATCAAA CCAAGCGATAG CCC CTAT-GCTTGG TGTCTTATTCACAGG TERM 45 46497 - 46520 + g 70 -9 -3.26444 | gap 1, opp_overlap 46497, overlap 46495 46493 AGCGTTTTTATCAAA CCAAGCGATAG CCC CTAT-GCTTGG TGTCTTATTCACAGG purD 46998 - 48353 + | phosphoribosylamine--glycine ligase TERM 46 48401 - 48387 - f 83 -11.4 -2.78216 | overlap 48384 TAGCGTCAGCAATCA GCGACC GAA GGTCGC TCCAAAAAGAAAGAA TERM 47 48611 - 48594 - g 73 -8.5 -3.64822 | opp_overlap 48589, overlap 48604 ATTTTTCTACGGAAA GTTTCGA CAAG TCGAAAC GCCCCTTTGTATCTT purE 48511 - 49122 + | phosphoribosylaminoimidazole carboxylase catalytic subunit purK 49106 - 50182 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 48 50463 - 50451 - g 72 -3.5 -5.01535 | opp_overlap 50451 CTATAACGATAAAAA TAAAA AAA TTTTA TATTTTATTCAAACT M5005_Spy_0032 50209 - 51852 + | hypothetical protein purB 51870 - 53162 + | adenylosuccinate lyase TERM 49 53174 - 53189 + F 86 -4.7 -5.63517 | opp_overlap 53163 53174, overlap 53167 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA TERM 50 53189 - 53174 - f 93 -4.7 -6.10295 | opp_overlap 53174 53167, overlap 53163 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA M5005_Spy_0034 53294 - 54205 + | transcriptional regulator ruvB 54431 - 55429 + | Holliday junction DNA helicase B TERM 51 55852 - 55842 - g 75 -5.4 -4.6902 | overlap 55851 CGATAATGTGAAAAA TCTC AAA GAGA TGTCGCAACATCAAT M5005_Spy_0036 55567 - 56004 + | protein tyrosine phosphatase M5005_Spy_0037 56027 - 56428 + | hypothetical protein TERM 52 56600 - 56612 + G 71 -4.1 -5.00616 | overlap 56601 CAAAAAAAGAGTCTA TCGAT ATT ATCGG TTTTTTAAAAAGACG TERM 53 57404 - 57418 + G 70 -2.8 -5.11836 | overlap 57406 TGTCTCATATTTTGG CAGTTA TTC TAACAG TTTTCTTTTCAATCT M5005_Spy_0038 56425 - 58200 + | acyltransferase TERM 54 58427 - 58407 - f 83 -4.8 -5.48303 | opp_overlap 58407, overlap 58408 ATAATTTGAAAAAAA CTTCACAA ATTTA TTGTGAAA TGATTTACAAAATTT adh2 58509 - 61151 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 55 61206 - 61175 - f 91 -11.9 -3.81951 | opp_overlap 61175 GTTGATACCAGGAAA TGATTTCTTATGA TTAAAG TCATAAGAAATCA TTTTATTTTCTAAAT TERM 56 61175 - 61206 + F 100 -12.6 -5.19275 | opp_overlap 61175 GTTGATACCAGGAAA TGATTTCTTATGAT TAAA GTCATAAGAAATCA TTTTATTTTCTAAAT adhA 61403 - 62419 + | alcohol dehydrogenase TERM 57 62530 - 62476 - f 91 -11.9 -3.61371 | gap 2, opp_overlap 62481, overlap 62481 AAACTTGATTCCAAA TAAAATAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTATTTTG ATACATTGAAAGTTG TERM 58 62481 - 62525 + F 100 -14 -4.30978 | gap 2, opp_overlap 62476 62481 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTG--ACTCGAGAGTGCTA TTTTGATACATTGAA TERM 59 62525 - 62481 - f 100 -11.8 -4.88918 | gap 2, opp_overlap 62481, overlap 62476 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTA TTTTGATACATTGAA M5005_Spy_0041 62807 - 63778 + | Na+ driven multidrug efflux pump M5005_Spy_0042 63783 - 64100 + | Na+ driven multidrug efflux pump TERM 60 64087 - 64108 + F 95 -5.9 -6.06723 | opp_overlap 64088, overlap 64088 AAAAGTACCAAGAAA TTACCTTTC ATTA GGAAGGTAG TTTTTTTTTGAAAAA TERM 61 64088 - 64107 + F 75 -7.2 -4.22949 | opp_overlap 64088, overlap 64087 AAAGTACCAAGAAAT TACCTTTC ATTA GGAAGGTA GTTTTTTTTTGAAAA TERM 62 64175 - 64190 + F 71 -7.6 -3.58343 | TTATTATATTGTGGT GCTGTA AAAA TACAGC TTTAGCAATGATACA rpsJ 64301 - 64609 + | 30S ribosomal protein S10 TERM 63 64713 - 64723 + F 79 -4 -5.49568 | CAGAAGCTTTTGTGT TAGA TTT TCTA TTTTTATTTTGAGTT TERM 64 65395 - 65367 - g 70 -5.4 -4.40358 | gap 1, overlap 65370 65386 AGTTATCCCAGAAAA GAACGTTATCCTT GTTA AAGG-TAACGTAC CAGGTGCTAAGAAAT TERM 65 65392 - 65370 - g 70 -5.7 -4.32067 | gap 1, overlap 65367 65386 TATCCCAGAAAAGAA CGTTATCCTT GTTA AAGG-TAACG TACCAGGTGCTAAGA rplC 64825 - 65451 + | 50S ribosomal protein L3 rplD 65475 - 66098 + | 50S ribosomal protein L4 TERM 66 66138 - 66125 - g 76 -3.1 -5.28481 | opp_overlap 66132, overlap 66126 GACGTAATCAAAAAA CCAGT TATC ACTGA GAAGTCAATGATTGC rplW 66098 - 66394 + | 50S ribosomal protein L23 rplB 66412 - 67245 + | 50S ribosomal protein L2 TERM 67 67489 - 67471 - g 84 -2.4 -5.83211 | GACGAAAAGAAAAAA GTAATCAA AAC TTGGTCAC GTCGTTCAACGATTT rpsS 67384 - 67662 + | 30S ribosomal protein S19 TERM 68 67720 - 67742 + G 79 -9.2 -3.86106 | overlap 67711 ATGGCTCGTACAGTG CGTGTTTCAC CTC GTAAAACACG TTTAGTACTTGATCT rplV 67678 - 68022 + | 50S ribosomal protein L22 rpsC 68035 - 68688 + | 30S ribosomal protein S3 rplP 68692 - 69105 + | 50S ribosomal protein L16 rpmC 69115 - 69321 + | 50S ribosomal protein L29 rpsQ 69347 - 69607 + | 30S ribosomal protein S17 rplN 69632 - 70000 + | 50S ribosomal protein L14 rplX 70079 - 70384 + | 50S ribosomal protein L24 TERM 69 70380 - 70364 - f 70 -2.2 -5.21709 | opp_overlap 70364 CGTTACAGCAAAAAA TCAGGC GAAGT GCTTGA TTAATCACGAAGGAA rplE 70408 - 70950 + | 50S ribosomal protein L5 TERM 70 71057 - 71044 - g 79 -6.7 -4.56775 | opp_overlap 71044 ACTCGCTGTGAAAAA TGTGG ACGT CCACA TTCAGTTTACCGCAA rpsN 70966 - 71151 + | 30S ribosomal protein S14 TERM 71 71196 - 71160 - f 80 -10.4 -3.01831 | opp_overlap 71159 71160 71162 71165 71167, overlap 71155 71162 71167 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG CTTAATTAAAACGGT TERM 72 71160 - 71196 + F 78 -10.4 -2.60194 | opp_overlap 71160 71155 71162 71167, overlap 71159 71162 71165 71167 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG CTTAATTAAAACGGT TERM 73 71246 - 71234 - f 73 -7.7 -3.84712 | TAAGCTGATACCAAA GTCCT TTA AGGAC AACATTAACTAGTAA rpsH 71302 - 71700 + | 30S ribosomal protein S8 rplF 71903 - 72439 + | 50S ribosomal protein L6 rplR 72544 - 72900 + | 50S ribosomal protein L18 TERM 74 73151 - 73135 - g 73 -9.5 -3.16564 | overlap 73127 AAAAACATGATCGAA GTACCAA TGG TTGGTAC AACAATCCCTCACGA rpsE 72919 - 73413 + | 30S ribosomal protein S5 rpmD 73428 - 73610 + | 50S ribosomal protein L30 rplO 73824 - 74264 + | 50S ribosomal protein L15 secY 74281 - 75585 + | preprotein translocase subunit SecY TERM 75 75583 - 75618 + F 70 -4.2 -4.66163 | gap 1, opp_overlap 75588 75590 75592, overlap 75588 75589 75592 ATGAATACAGCAGAA TAGAATACA-GGTTGAC ATT GTCAACCTTCTATTTTG TTTTTAAATGACAAT TERM 76 75588 - 75613 + F 79 -4.1 -5.2853 | gap 1, opp_overlap 75588 75590 75592, overlap 75583 75589 75592 TACAGCAGAATAGAA TACA-GGTTGAC ATT GTCAACCTTCTA TTTTGTTTTTAAATG TERM 77 75610 - 75590 - f 72 -8.3 -3.46859 | opp_overlap 75589 75588 75583 75592, overlap 75588 75592 CAGCAGAATAGAATA CAGGTTGAC ATT GTCAACCTT CTATTTTGTTTTTAA TERM 78 75608 - 75592 - f 86 -10.9 -3.29569 | opp_overlap 75589 75588 75583 75592, overlap 75590 75588 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT TERM 79 75592 - 75608 + F 100 -10.9 -4.1922 | opp_overlap 75592 75590 75588, overlap 75589 75588 75583 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT adk 75735 - 76373 + | adenylate kinase TERM 80 76407 - 76378 - f 77 -9.5 -3.20126 | opp_overlap 76384, overlap 76375 76384 AACTCAAATAAATTA TACAAATCTACTT GCAT AAGTAGATTAGTA ATGATATACTAGTTT TERM 81 76401 - 76384 - f 75 -7.1 -4.20027 | opp_overlap 76384, overlap 76375 76378 AATAAATTATACAAA TCTACTT GCAT AAGTAGA TTAGTAATGATATAC infA 76491 - 76709 + | translation initiation factor IF-1 rpmJ 76735 - 76851 + | 50S ribosomal protein L36 TERM 82 77079 - 77061 - g 71 -7.4 -3.93288 | GTGGATGCAATCAAA GTTGAAGG TGA CCTTCGAC GTGAAGTAAACATGA rpsM 76869 - 77234 + | 30S ribosomal protein S13 rpsK 77252 - 77635 + | 30S ribosomal protein S11 TERM 83 78153 - 78143 - g 79 -3.2 -5.5074 | overlap 78146 78148 GAAGGCAACAAAAAA GATG ATG CACC TGTGGGTACATTGGC rpoA 77681 - 78619 + | DNA-directed RNA polymerase subunit alpha rplQ 78634 - 79020 + | 50S ribosomal protein L17 TERM 84 79143 - 79193 + T 100 -12.9 -4.92791 | opp_overlap 79143 ATTGTTAATATGTAA CGCTTGTTTATGAAAGGTATCTA AGCTA TAGAAACTTTTTATAAGCAGGCG TTTTGTTGTATTATG TERM 85 79265 - 79251 - T 77 -8.6 -3.70437 | opp_overlap 79250 79248, overlap 79249 79256 AGCAAAACAATAACA CAGAAG CCT CTTCTG ATGCGTTTATAAAGT TERM 86 79404 - 79392 - T 82 -4.1 -5.41746 | overlap 79393 AATGTCCGAAAAAAA CTTGC ATC GCAAA CAGATGCTCAAACTA M5005_Spy_0072 79752 - 79618 - | hypothetical protein TERM 87 79817 - 79803 - H 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 88 82100 - 82081 - H 91 -12.2 -3.62096 | opp_overlap 82080 82079 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 89 82792 - 82759 - H 71 -8.9 -3.03412 | overlap 82758 82781 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 90 86009 - 86040 + H 100 -10.4 -4.43012 | opp_overlap 86016, overlap 86007 86016 GGCCGCCGGTATACT TGAAAAACAAGGTT TGTA AACCTTGTTTTTTG TTTTGATCTTAAGCT TERM 91 86016 - 86033 + H 100 -8.5 -5.83211 | opp_overlap 86016, overlap 86007 86009 GGTATACTTGAAAAA CAAGGTT TGTA AACCTTG TTTTTTGTTTTGATC TERM 92 86033 - 86016 - H 89 -8.5 -4.64766 | opp_overlap 86007 86009 86016 GGTATACTTGAAAAA CAAGGTT TGTA AACCTTG TTTTTTGTTTTGATC M5005_Spy_0073 86264 - 86449 + | hypothetical protein M5005_Spy_0074 87087 - 87224 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase M5005_Spy_0075 87235 - 87393 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase M5005_Spy_0076 87499 - 87660 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 93 87659 - 87643 - f 70 -4.5 -4.81249 | TGCCAAACCGAAAAA CAAACTA TAA TAGTTTA AAAGGACTTTGCAAG adcR 87770 - 88213 + | MarR family transcriptional regulator TERM 94 88449 - 88418 - g 73 -2.4 -5.33985 | gap 1, opp_overlap 88427 88439, overlap 88421 88427 88437 GCTAAAAAAAATAAA GAC-GGTAAACAATT AAG AATTGCTTACTTGCC GCAGCAAGTAGCTAG adcC 88217 - 88936 + | high-affinity zinc uptake system ATP-binding protein adcB 88929 - 89744 + | high-affinity zinc uptake system membrane protein TERM 95 89754 - 89778 + T 100 -15.9 -4.57482 | opp_overlap 89754 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC TERM 96 89778 - 89754 - T 100 -15.9 -5.29445 | opp_overlap 89754 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC M5005_Spy_0080 90167 - 89784 - | bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) TERM 97 89954 - 89981 + g 80 -10.6 -3.36878 | CTGAAATGGGAAGGT GCTGCTCTAGCT TAGC AACTAGAGCGGC TTGTAAGTCGATGAG TERM 98 90191 - 90204 + r 75 -8.1 -3.81259 | opp_overlap 90191 CTCCTTATGAAAAAA CGAGC CAGA GCTCG TTTAATCGGTTATCT TERM 99 90204 - 90191 - R 90 -8.1 -5.14563 | opp_overlap 90191 CTCCTTATGAAAAAA CGAGC CAGA GCTCG TTTAATCGGTTATCT tyrS 91474 - 90218 - | tyrosyl-tRNA synthetase TERM 100 91661 - 91679 + G 85 -2.5 -5.86465 | gap 1 GGTGCTATTACGTAC GTTGAGAC TACT GTCT-AAC TTTTTTTATATTGTT pbp1b 91566 - 93878 + | multimodular transpeptidase-transglycosylase PBP 1B TERM 101 93963 - 94003 + F 77 -4.8 -5.1104 | opp_overlap 93963 93965, overlap 93965 TCCAGTTAGGAAGAA CAGCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGCTC TTTTTGTGTCTATTT TERM 102 93965 - 94001 + F 78 -7.4 -4.15325 | opp_overlap 93965 93963, overlap 93963 CAGTTAGGAAGAACA GCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGC TCTTTTTGTGTCTAT rpoB 94142 - 97708 + | DNA-directed RNA polymerase subunit beta rpoC 97799 - 101440 + | DNA-directed RNA polymerase subunit beta' TERM 103 101451 - 101466 + F 79 -4.6 -5.38951 | AATAATCTCATGAAA GGGTCC TTAG GGGCTC TTTTTTGTCTGAGTT M5005_Spy_0085 101592 - 101957 + | putative DNA binding protein TERM 104 102013 - 101987 - f 74 -6.8 -4.41817 | opp_overlap 101987, overlap 101982 CAAAATAAGTTAAAA GAAAATATCA CTTCTTC TGATATTTTC TTTTTTTGTTTACGA TERM 105 101987 - 102013 + F 95 -6.8 -5.95539 | opp_overlap 101987 101982 CAAAATAAGTTAAAA GAAAATATCA CTTCTTC TGATATTTTC TTTTTTTGTTTACGA TERM 106 102081 - 102071 - gf 70 -5.4 -4.33105 | opp_overlap 102063, overlap 102072 CAAGCATTAGCAAAA GCTA TTC TAGC AAAAGCTGAACAGGT TERM 107 102131 - 102143 + GF 91 -6.3 -5.42259 | opp_overlap 102131 ATTTTGCCAAGAGCA GATCA ATA TGATC TTTTTTTACGAATAG comYA 102050 - 102988 + | comG operon protein 1 TERM 108 103089 - 103075 - gf 73 -5.7 -4.56597 | opp_overlap 103060 103079 103082, overlap 103079 TTGCTTTTTTAAAAA GAAGC CAGTT GCTTC AGCTAGATTATGTTC TERM 109 103506 - 103516 + GF 75 -8.2 -3.81575 | TTGAAACTCTATAGT CGGC TAA GCCG TTATCCTTTTTTAGG comYB 102867 - 103958 + | comG operon protein 2 comYC 103960 - 104286 + | comG operon protein 3 M5005_Spy_0089 104360 - 104689 + | comG operon protein 4 M5005_Spy_0090 104646 - 104930 + | hypothetical protein comYD 104923 - 105357 + | comG operon protein 6 M5005_Spy_0092 105341 - 105667 + | comG operon protein 6 M5005_Spy_0093 105765 - 106718 + | adenine-specific methyltransferase TERM 110 106711 - 106722 + F 77 -3 -5.58179 | GGAAACTGAGTAATG TCAA TTAA TTGA TTTTTTGTTATAATA TERM 111 106788 - 106778 - g 75 -5.4 -4.6644 | AAGAGAGGTTAAAAA TGTC AAA GACA ATTGCAATTAATGCA ackA 106777 - 107973 + | acetate kinase TERM 112 107988 - 107976 - f 89 -7.7 -5.2894 | AAATACAAAATAAAA GAGAC TAA GTCTC AATAGATTAACCAAG TERM 113 108023 - 107999 - f 81 -10.1 -3.37493 | opp_overlap 107999, overlap 108003 GTCTCAATAGATTAA CCAAGTAAGGT AAC ACTTTACTTGG TTTTTTATGAGGTTT TERM 114 107999 - 108023 + F 100 -12.3 -5.28826 | opp_overlap 107999 108003 GTCTCAATAGATTAA CCAAGTAAGGT AAC ACTTTACTTGG TTTTTTATGAGGTTT M5005_Spy_0095 108160 - 108468 + | hypothetical protein proC 109321 - 108551 - | pyrroline-5-carboxylate reductase pepA 110436 - 109369 - | glutamyl aminopeptidase TERM 115 110561 - 110537 - R 93 -7.2 -5.58522 | overlap 110539 CACAGAAAAGAAAAA TCCCAGAGAC TAGAG ATCTCTGGAA GAAGTGTTTGTCTTT M5005_Spy_0098 110710 - 110546 - | hypothetical protein M5005_Spy_0099 110892 - 111185 + | hypothetical protein TERM 116 111256 - 111278 + G 70 -9.8 -2.60206 | overlap 111255 111254 111258 GGTGTTATTTTTTAC GGCAGACTGG TGT CCAGACTGTC AATTTATTTATCCTA M5005_Spy_0100 111182 - 111499 + | thioredoxin M5005_Spy_0101 111517 - 112143 + | tRNA-binding domain-containing protein TERM 117 112193 - 112212 + F 93 -7.2 -5.66338 | opp_overlap 112193 ATGACCAGAAAAAAA GGATTAGG AGCC CTTAATCC TTTTTTCTTATGTTT TERM 118 112212 - 112193 - f 88 -5.8 -5.67967 | gap 1, opp_overlap 112193 ATGACCAGAAAAAAA GGATT-AGG AGC CCTTAATCC TTTTTTCTTATGTTT M5005_Spy_0102 112295 - 112690 + | single-strand DNA-binding protein M5005_Spy_0103 113591 - 112950 - | deoxyadenosine kinase/deoxyguanosine kinase M5005_Spy_0104 114588 - 113611 - | tRNA-dihydrouridine synthase TERM 119 114488 - 114464 - G 79 -9.3 -3.86944 | TCCATAACCACCAAA CCAGCACCAAA TTC TTTGGCGATGG TACGAAAGGCAGAAT hslO 115447 - 114575 - | Hsp33-like chaperonin TERM 120 115259 - 115276 + g 70 -3.4 -4.8622 | opp_overlap 115242, overlap 115242 ACCAATCACTTTGAC GGTGAT TTTACT ATCGCC TTTTTGATTAGCCGC TERM 121 115546 - 115527 - R 79 -4.3 -5.25893 | gap 1, opp_overlap 115527 ATAGACAGTAAAAAA TCCCAGAG AATGA CTC-GGGA TTAAGTTAAGGTGTG TERM 122 115572 - 115593 + r 79 -8.7 -3.77721 | GTGTGGTCTAAAGTC GCGCAATGT GGTG ACATGGCGC TTATGTTAATTGCTT rofA 117087 - 115594 - | transcriptional regulator TERM 123 118188 - 118141 - g 78 -7.3 -4.40894 | gap 2 TAAAGGATACCAAAA TCT-TTTGAG-TGGTGGTTTAGT TCCT ACTAAACCACCAACTCCAGGAGA CCCACCAATGCCTCC TERM 124 119258 - 119248 - g 70 -5.4 -4.42047 | opp_overlap 119248, overlap 119245 ATTAAAAAATAATAA GCAA GAA TTGC TTTCTCAAACTGTTA M5005_Spy_0107 117335 - 119623 + | fibronectin-binding protein M5005_Spy_0108 119616 - 120173 + | signal peptidase I M5005_Spy_0109 120206 - 121228 + | fibronectin-binding protein eftLSL.B 121238 - 121951 + | hypothetical protein M5005_Spy_0111 121973 - 122620 + | hypothetical protein TERM 125 122686 - 122709 + T 79 -4 -5.4505 | opp_overlap 122686 AAGAAAAACCAAAAA TTCCTTTA CTTAATGA TAAAGGAA TTTTTTATTGCCCCA TERM 126 122709 - 122686 - T 80 -4.7 -5.24003 | opp_overlap 122686 AAGAAAAACCAAAAA TTCCTTTAC TTAATG ATAAAGGAA TTTTTTATTGCCCCA TERM 127 122772 - 122800 + T 71 -5.3 -4.56133 | opp_overlap 122772, overlap 122766 AAGGTATATTGAAAA CCTCCAAAGTT TCTAATT GACTCTGGAGG TTTTGATTATTGACA TERM 128 122800 - 122772 - T 71 -6.8 -4.24606 | opp_overlap 122772 122766 AAGGTATATTGAAAA CCTCCAAAGT TTCTAATTG ACTCTGGAGG TTTTGATTATTGACA M5005_Spy_0112 124129 - 122807 - | transposase TERM 129 124265 - 124279 + r 89 -8.6 -4.36778 | overlap 124251 GGGCTAGCTCATTAG CCATTG TTT CAATGG TTTTGGCTTGTGTTT TERM 130 124386 - 124361 - R 83 -6.9 -4.66987 | opp_overlap 124361 124363 TATACCTGAAGAAAA GCCATGAGTTC AATA GAAATCATGAC TTTTTGAAATTTTTA TERM 131 124361 - 124386 + r 72 -4.7 -4.7657 | opp_overlap 124361, overlap 124363 TATACCTGAAGAAAA GCCATGAGTTC AATA GAAATCATGAC TTTTTGAAATTTTTA M5005_Spy_0113 124720 - 124370 - | transposase M5005_Spy_0114 125024 - 125779 + | sortase TERM 132 125807 - 125827 + T 100 -11.1 -5.0538 | opp_overlap 125807 AGATTGTAATAGAAA CTGGTGGAC TTT GCCCACCAG TTTTTTGGGGTACGG TERM 133 125827 - 125807 - T 100 -13.3 -4.20769 | opp_overlap 125807 AGATTGTAATAGAAA CTGGTGGAC TTT GCCCACCAG TTTTTTGGGGTACGG TERM 134 125932 - 125903 - T 85 -4.4 -5.59962 | gap 1 TAAAAGAAATAAAAA GAGTCTGAG-CAA TCATG TTGTCTTAGACTC TGACTGTATTATGCA M5005_Spy_0115 126638 - 125973 - | hypothetical protein TERM 135 126400 - 126389 - G 76 -4.4 -5.1356 | CCTTAGGAAGAAAAA CTGA GAAA TCAG GGTAAACCCATTGTT TERM 136 126708 - 126686 - H 91 -5 -5.89921 | opp_overlap 126686, overlap 126672 ATTATAACAAAAAAA CTAAAAAGTA AAT TATTTTTTAG TTTTTTATCATAATT TERM 137 126686 - 126708 + H 89 -7.2 -5.33785 | opp_overlap 126672 126686 ATTATAACAAAAAAA CTAAAAAGTA AAT TATTTTTTAG TTTTTTATCATAATT atoE 126987 - 128393 + | short-chain fatty acids transporter M5005_Spy_0117 128856 - 128461 - | LysR family transcriptional regulator M5005_Spy_0118 129371 - 128952 - | LysR family transcriptional regulator M5005_Spy_0119 129492 - 130676 + | acetyl-CoA acetyltransferase atoD.2 130688 - 131347 + | acetate CoA-transferase alpha subunit M5005_Spy_0121 131350 - 131997 + | acetyl-CoA:acetoacetyl-CoA transferase beta subunit M5005_Spy_0122 132799 - 132119 - | putative DNA-binding protein M5005_Spy_0123 132973 - 133338 + | translation initiation inhibitor sloR 133375 - 134394 + | transcriptional regulator M5005_Spy_0125 134849 - 135169 + | hypothetical protein TERM 138 135319 - 135303 - g 77 -8 -4.1552 | overlap 135290 GATGCTTTTAACAAA GGCAAC GTCAA GTTGCC ACAAATCGTCCAATA TERM 139 136663 - 136675 + G 78 -4.1 -5.27476 | overlap 136659 CGGCCTATACGTCAA GTCTA GCT TGGAC TTTTATTTTATTAGG ntpI 135159 - 137180 + | V-type ATP synthase subunit I ntpK 137182 - 137661 + | V-type ATP synthase subunit K TERM 140 137701 - 137691 - f 71 -3.2 -5.07567 | CTAGATTTTAAAAAA CGGT GAC ACCA CTAACACTATCAAAA ntpE 137729 - 138313 + | V-type sodium ATP synthase subunit E ntpC 138329 - 139327 + | V-type ATP synthase subunit C ntpF 139324 - 139644 + | V-type ATP synthase subunit F TERM 141 140025 - 140053 + G 100 -14.7 -3.92641 | opp_overlap 140031 TCAGGGATCGGTCCA GGAGAACCAGTAG TGA CTACTGGTTGTCC TTTGTCGGTCGAGTT TERM 142 140047 - 140031 - g 80 -10.9 -3.40522 | opp_overlap 140025 ATCGGTCCAGGAGAA CCAGTAG TGA CTACTGG TTGTCCTTTGTCGGT TERM 143 141018 - 141034 + G 70 -8.7 -3.35224 | overlap 141016 GCCATCGGCGCGGTT TCTCCTC CTG GAGGGGA TATTTCAGAGCCTGT ntpA 139845 - 141620 + | V-type ATP synthase subunit A TERM 144 142524 - 142512 - g 72 -3.3 -5.03314 | TTGATCGGGAAAAAA GGGTC AGT GACTC AAATTCCTATTTTAA ntpB 141621 - 143036 + | V-type ATP synthase subunit B ntpD 143081 - 143707 + | V-type ATP synthase subunit D TERM 145 143758 - 143795 + T 74 -5.6 -4.66609 | gap 1, opp_overlap 143758 TTAAGTAGTAAAAAA GCAAGCCATCA-AAGGG ATTAA CCTAACTGATGGCTTGC TTTTTAAGTAGCGTG TERM 146 143795 - 143758 - T 85 -6.5 -5.2189 | gap 2, opp_overlap 143758 TTAAGTAGTAAAAAA GCAAGCCATCAA--AGG GATTAA CCTAACTGATGGCTTGC TTTTTAAGTAGCGTG M5005_Spy_0134 145089 - 143827 - | tellurite resistance protein M5005_Spy_0135 145980 - 145102 - | hypothetical protein purA 146418 - 147710 + | adenylosuccinate synthetase TERM 147 147729 - 147751 + F 80 -7 -4.64144 | opp_overlap 147729 GTCTAGTATGACAAA GAGTTGGATA GCG TTTCCAGCTC TTTTTACCGCTTGTT TERM 148 148524 - 148512 - g 72 -3.4 -5.09245 | opp_overlap 148512 CTAAAACGACAAAAA CCAA GCAAG TTGG TTTTGTAGGTGGTAT M5005_Spy_0137 148037 - 149080 + | nucleoside-binding protein TERM 149 149095 - 149124 + F 100 -10.1 -4.72986 | opp_overlap 149094 AAACTGTACAATACC GTCCAGAGTCG TCACGAAC CGACTTTGGAC TTTTTAATAAAGGTG TERM 150 149168 - 149136 - f 85 -8.6 -4.16016 | gap 1 GGACTTTTTAATAAA GGTGTCAA-GTAGCT CCAC AGATACGTTGACACC AGCCCTGTCTTTTAT nusG 149253 - 149792 + | transcription antitermination protein NusG TERM 151 149802 - 149832 + F 100 -14.2 -5.26875 | opp_overlap 149802 CTATAGGCTCTCAAA GGTCTGATGGTA TAAGTAT TACCATCAGACC TTTTTTAGTTGGCAG TERM 152 149832 - 149802 - f 100 -14.2 -3.55071 | opp_overlap 149802 CTATAGGCTCTCAAA GGTCTGATGGTA TAAGTAT TACCATCAGACC TTTTTTAGTTGGCAG TERM 153 150723 - 150705 - g 74 -6 -4.43844 | opp_overlap 150719 CCATCAGGGACAAAA CAAGGATA TTT TAGCCTTG TCAGAGGTCACTTTT TERM 154 151048 - 151032 - g 72 -4.4 -4.67048 | TGATGCTAAAAGAAA GTCAAC GATTG GTCGAC AAGAAAACGGTCTTT nga 150154 - 151518 + | NAD glycohydrolase M5005_Spy_0140 151523 - 152008 + | hypothetical protein TERM 155 152422 - 152412 - g 73 -5.4 -4.58663 | AGTACTTGCTAAAAA TGGT GAA ACCA TTGAAAATTTTGTTC slo 152032 - 153747 + | streptolysin O TERM 156 153864 - 153834 - f 100 -12.8 -4.48664 | opp_overlap 153834 CAAATACAGAAGAAA GCTTGTCTATGA GATACCT TCATAGACAAGC TTTTTTGATATACTA TERM 157 153834 - 153864 + F 100 -13.5 -5.23316 | opp_overlap 153834 CAAATACAGAAGAAA GCTTGTCTATGAG ATACC TTCATAGACAAGC TTTTTTGATATACTA M5005_Spy_0142 154002 - 154433 + | hypothetical protein TERM 158 154451 - 154479 + T 79 -3.9 -5.45726 | opp_overlap 154445 AAAATGAATTAAAAA CAGCCTTTAAC TGCTAAT GTGAAAGGTTG TTTTTTTAGGATATG TERM 159 154569 - 154550 - T 93 -7.9 -5.71712 | opp_overlap 154550 GGCCACACAAAAAAA CAATGGC GTCAAA GCCATTG TTTTTTTAGCATAAT TERM 160 154550 - 154569 + T 93 -7.9 -5.44721 | opp_overlap 154550 GGCCACACAAAAAAA CAATGGC GTCAAA GCCATTG TTTTTTTAGCATAAT M5005_Spy_0143 154855 - 154619 - | hypothetical protein TERM 161 155118 - 155128 + r 79 -4.6 -5.32396 | GCTTGTCCTTTTATA GGCG GTA TGCC TTTTCTTTTTAATCT TERM 162 155210 - 155183 - R 100 -16.4 -4.88407 | opp_overlap 155183 TTAGCCAATCAAAAA GCCTAGAACTGC TTAC GCAGCTCTAGGC TTTTCATAACCGTAG TERM 163 155183 - 155210 + r 100 -14.2 -4.26076 | opp_overlap 155183 TTAGCCAATCAAAAA GCCTAGAACTGC TTAC GCAGCTCTAGGC TTTTCATAACCGTAG M5005_Spy_0144 155432 - 155265 - | hypothetical protein M5005_Spy_0145 155894 - 155607 - | hypothetical protein TERM 164 156287 - 156301 + H 77 -5 -5.04601 | AGGTTAGCAGATCAC GCTTTT TTG AAGAGC TTTTTGGTTTGTGCA metB 156335 - 157525 + | cystathionine beta-lyase TERM 165 157507 - 157518 + F 70 -4.4 -4.75356 | ATTGGCCGATTTTGA GCAA GCAC TTGC TTTTTAAGTCTATTT TERM 166 157535 - 157568 + F 100 -10.3 -5.52096 | overlap 157536 TTTTAAGTCTATTTG TCCAGATTGGCTCTG TTTA CAGAGCAAGTCTGGC TTTTTTATTAGCTTT TERM 167 157536 - 157567 + F 100 -13.8 -3.88817 | overlap 157535 TTTAAGTCTATTTGT CCAGATTGGCTCTG TTTA CAGAGCAAGTCTGG CTTTTTTATTAGCTT leuS 157736 - 160237 + | leucyl-tRNA synthetase TERM 168 160355 - 160332 - f 100 -14 -4.88067 | opp_overlap 160332 ACTCATCTAGAAAAA CCACAAGAAC GAAG GTTCTTGTGG TTTTTAATCGTTGTT TERM 169 160332 - 160355 + F 100 -14 -4.83593 | opp_overlap 160332 ACTCATCTAGAAAAA CCACAAGAAC GAAG GTTCTTGTGG TTTTTAATCGTTGTT TERM 170 160601 - 160570 - g 72 -8.8 -3.53811 | CCTAGCTCCCCTAAA CTGGTTCTCGCAAA ATAT TTTGCAAAACCCAG CGTTCTTTGTAGGTC TERM 171 161252 - 161268 + G 73 -7.3 -3.96696 | overlap 161262 ATTTTCCATGATACT GTTGTTG CGT CAGCAAC TTTGATGTTGGTCTT ulaA 160544 - 161977 + | ascorbate-specific PTS system enzyme IIC M5005_Spy_0149 162048 - 162326 + | PTS system, 3-keto-L-gulonate specific IIB component M5005_Spy_0150 162449 - 162934 + | PTS system, 3-keto-L-gulonate specific IIA component ulaD 163025 - 163687 + | 3-keto-L-gulonate-6-phosphate decarboxylase M5005_Spy_0152 163692 - 164555 + | putative L-xylulose 5-phosphate 3-epimerase araD 164557 - 165261 + | L-ribulose-5-phosphate 4-epimerase TERM 172 165335 - 165357 + G 89 -9.9 -4.19258 | TGTTAATCATTGTTT GGGCAAGTC CTTTT GACTTGTCC TTTTCGATGAACTAT M5005_Spy_0154 165319 - 165465 + | hypothetical protein TERM 173 166642 - 166660 + G 80 -2.4 -5.65513 | overlap 166644 TGTAAGGCGCTCGTT TACCGTAA AGC TTATGGGA TTTTTTTAGTTAATC M5005_Spy_0155 165586 - 167232 + | BigG family transcription antiterminator TERM 174 167455 - 167437 - f 73 -9 -3.19568 | overlap 167436 TCATTGACAAGAAAG TCTATACT TAA AGTATAGA AACGAAGAACAAATT M5005_Spy_0156 167485 - 168576 + | putative L-ascorbate 6-phosphate lactonase opuAA 169064 - 170260 + | glycine betaine transport ATP-binding protein TERM 175 170500 - 170489 - g 89 -5.8 -5.4505 | opp_overlap 170463 CTTGCTAAGAAAAAA TGGC CTTT GCCA ACCTTTACCTTGTTA TERM 176 171136 - 171125 - g 81 -5.8 -5.11112 | overlap 171131 AAACCTCAAGAAAAA GCCA AAGC TGGC AAAACCAATAAATGG TERM 177 171337 - 171316 - g 79 -6.7 -4.60255 | gap 1, overlap 171320 AGAAGTTTTGAAAAA CGAAGGTTAC CAT GTAACCTT-G ACACCGCTTGACAAT TERM 178 171334 - 171320 - g 77 -8.6 -3.80855 | overlap 171316 GTTTTGAAAAACGAA GGTTAC CAT GTAACC TTGACACCGCTTGAC opuABC 170276 - 172003 + | glycine betaine-binding protein/glycine betaine transport system permease protein TERM 179 172033 - 172052 + F 93 -8.6 -4.74103 | opp_overlap 172033 ATAGCAAATACAGAA GTCTAGGA ATTT TCCTAGGC TTTTTAGGTTAACCA TERM 180 172871 - 172839 - g 80 -7.9 -4.32649 | overlap 172844 ACCTCAAAAATGAAA GAAAACTTGATCA ATGACCG TGACCAAGCTTTC CTATCTAAAACGCTC TERM 181 172866 - 172844 - g 74 -4.2 -5.10516 | overlap 172839 AAAAATGAAAGAAAA CTTGATCA ATGACCG TGACCAAG CTTTCCTATCTAAAA polA 172134 - 174776 + | DNA polymerase I M5005_Spy_0160 174963 - 175418 + | CoA binding protein perR 175470 - 175937 + | ferric uptake regulation protein TERM 182 175979 - 175952 - f 77 -8.6 -3.61268 | opp_overlap 175956, overlap 175944 175956 GAGTTAACCCTTAAA TAAAGGCATTAT AAAT ATAGTGCCTTTA CAAATCAAAAACCCC vlg 176094 - 176393 + | trans-acting positive regulator Mry TERM 183 177282 - 177292 + G 74 -4 -5.01823 | overlap 177289 AAGACATATGGCATG CTTA CTA TAAG TTTTCTTATTCTTAT M5005_Spy_0163 176615 - 177949 + | 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase TERM 184 178256 - 178235 - g 70 -9.5 -2.67441 | opp_overlap 178223, overlap 178223 178232 178240 TAAGTCATTAGACTA TCGAATGGC TTCT ACCATTCGA CATAATAGAGCTAGA M5005_Spy_0164 177942 - 178472 + | parB-like nuclease TERM 185 178529 - 178551 + T 100 -11.4 -4.74706 | opp_overlap 178526 178523 178529 TATCATTAACAACGA GAGAGAATCA GAT TGGTTCTCTC TTTTTGGATGTTCAA TERM 186 178551 - 178529 - T 74 -9.2 -2.96963 | opp_overlap 178529, overlap 178526 178523 TATCATTAACAACGA GAGAGAATCA GAT TGGTTCTCTC TTTTTGGATGTTCAA M5005_Spy_0165 178761 - 178519 - | transposase M5005_Spy_0166 179016 - 178801 - | transposase M5005_Spy_0167 179625 - 179056 - | transposase M5005_Spy_0168 179873 - 179658 - | transposase TERM 187 179762 - 179807 + g 77 -4.8 -4.93316 | gap 1, opp_overlap 179771, overlap 179764 179771 TTGTCTCAAATTGAG CAT-GACGAAGTGCGCTCCCA TGTCC TGGGAACGCACTTTCTCCATA TTTTTCATATTCTTG TERM 188 179764 - 179805 + g 73 -7.4 -4.06487 | gap 1, opp_overlap 179771, overlap 179762 179771 GTCTCAAATTGAGCA T-GACGAAGTGCGCTCCCA TGTCC TGGGAACGCACTTTCTCCA TATTTTTCATATTCT TERM 189 179771 - 179797 + g 93 -12.3 -4.02468 | opp_overlap 179771, overlap 179764 179762 ATTGAGCATGACGAA GTGCGCTCCCA TGTCC TGGGAACGCAC TTTCTCCATATTTTT TERM 190 179797 - 179771 - G 95 -14.5 -3.23395 | opp_overlap 179764 179762 179771 ATTGAGCATGACGAA GTGCGCTCCCA TGTCC TGGGAACGCAC TTTCTCCATATTTTT M5005_Spy_0169 181339 - 180029 - | malonate permease TERM 191 182184 - 182212 + G 70 -8.7 -3.28173 | opp_overlap 182199, overlap 182182 182185 GAAGTGGAAAGCCTT GCTGCTGCCGAAG AAG CTGCGGCGGCGGG TGTTGATATTATCAT TERM 192 182185 - 182211 + G 81 -12.2 -2.56181 | opp_overlap 182199, overlap 182184 182182 AAGTGGAAAGCCTTG CTGCTGCCGAAG AAG CTGCGGCGGCGG GTGTTGATATTATCA nadC 181563 - 182435 + | nicotinate-nucleotide pyrophosphorylase TERM 193 182738 - 182782 + T 100 -15.4 -4.62054 | opp_overlap 182735 182744, overlap 182739 182744 TTGGACAAATAATTA TTGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAATCCTTTTAG TTTTGCTTTAATTCG TERM 194 182739 - 182781 + T 100 -16.7 -3.36148 | opp_overlap 182735 182744, overlap 182738 182744 TGGACAAATAATTAT TGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAATCCTTTTA GTTTTGCTTTAATTC TERM 195 182744 - 182776 + T 100 -14.4 -4.74084 | opp_overlap 182744 182735, overlap 182739 182738 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAATCC TTTTAGTTTTGCTTT TERM 196 182776 - 182744 - T 91 -12.2 -3.74658 | opp_overlap 182739 182738 182744, overlap 182735 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAATCC TTTTAGTTTTGCTTT M5005_Spy_0171 183541 - 182735 - | transposase M5005_Spy_0172 184077 - 183562 - | transposase TERM 197 183986 - 184011 + g 70 -7.7 -3.75665 | overlap 183987 TTGAGATCGGATTCT GCCATATCAAA CTTT TTTGATATGGA TTTAATGGACTCTCC TERM 198 183987 - 184010 + g 80 -11.2 -2.85078 | overlap 183986 TGAGATCGGATTCTG CCATATCAAA CTTT TTTGATATGG ATTTAATGGACTCTC TERM 199 184128 - 184085 - R 93 -7.6 -5.63504 | gap 1, opp_overlap 184098, overlap 184087 AATTTCATAAAAAAA TAGCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC-A GTTCAAGGGCTATTT TERM 200 184127 - 184087 - R 100 -12.7 -4.45201 | opp_overlap 184098, overlap 184085 TTTCATAAAAAAATA GCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC AGTTCAAGGGCTATT M5005_Spy_0173 185026 - 184163 - | integral membrane protein M5005_Spy_0174 185063 - 185221 + | hypothetical protein TERM 201 185300 - 185289 - g 73 -5.8 -4.63172 | TATCAAAGCAGAAAA GCAC ACCG GTGC ACGCTTGGGCGAAAT tgt 185245 - 186387 + | queuine tRNA-ribosyltransferase TERM 202 186405 - 186440 + F 100 -9.8 -5.71712 | AAAAATGCTATGATC CTGGAACTGAGGGCGA TCTA TCGTCTTTGGTTTCAG TTTTTTTGTATAGAC M5005_Spy_0176 186604 - 186915 + | zinc finger protein M5005_Spy_0177 186919 - 187458 + | bioY protein TERM 203 187490 - 187521 + F 100 -16 -4.76041 | opp_overlap 187492 TTAAGTTGTGTTGAA CAGGTCTTGGCAGA TTTA TCTGCTAGGACCTG TTTTTGGTGGGTCTC M5005_Spy_0178 187598 - 188377 + | metal-dependent hydrolase M5005_Spy_0179 188377 - 188892 + | tRNA-specific adenosine deaminase M5005_Spy_0180 190726 - 189506 - | S-layer-like domain-containing protein TERM 204 189607 - 189595 - G 71 -6.3 -4.20932 | opp_overlap 189595 189593 AATACTGATTGAAAA GGTTA TGA TAACC TGTTTGATTCGTCGT TERM 205 190197 - 190207 + g 83 -3.2 -5.58179 | CTGCCTGATTGATAG GCTT CAA AGGC TTTTTTATTGTAGTC M5005_Spy_0181 190780 - 190887 + | putative cytoplasmic protein TERM 206 190880 - 190893 + F 71 -5.3 -4.4959 | AAAATGAAGCTATGC TCACT TGAA AGTGA TTTTACTTAGTTGGA speG 191138 - 191842 + | exotoxin type G precursor M5005_Spy_0183 191927 - 192046 + | hypothetical protein TERM 207 192063 - 192074 + F 89 -7.2 -5.2112 | opp_overlap 192062 TTATTACGGTAAAGC GGCC TCAG GGCC TTTTTTCATGATATT M5005_Spy_0184 192082 - 192201 + | putative cytoplasmic protein TERM 208 192771 - 192781 + G 70 -5.4 -4.41047 | TATTGCCTTTCGCGT GTTC AAA GAAC TTTTGGTTAAAAAAT pgi 192298 - 193647 + | glucose-6-phosphate isomerase TERM 209 193809 - 193761 - T 100 -20.6 -4.43309 | opp_overlap 193768 193772 CAAGGTTAAGTAAAA GGGATAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTATACC AAATTTCAGATAAGA TERM 210 193768 - 193802 + T 100 -18.1 -3.32294 | opp_overlap 193761, overlap 193772 AAGTAAAAGGGATAA TAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTA TTATACCAAATTTCA TERM 211 193772 - 193798 + T 100 -14.5 -4.30987 | opp_overlap 193761, overlap 193768 AAAAGGGATAATAAA GTGCGCTTCCA GAACA TGGGAGCGCAC TTTATTATACCAAAT TERM 212 193985 - 193951 - T 71 -7.9 -3.69621 | overlap 193916 193953 AGTGACAACCTTAAA GACCCTCCTAGAC TGTGAAAGT ATCTAGGAGGGAC TGTCAAAAAATTAAG TERM 213 193983 - 193953 - T 79 -9.1 -3.4268 | overlap 193916 193951 TGACAACCTTAAAGA CCCTCCTAGAC TGTGAAAGT ATCTAGGAGGG ACTGTCAAAAAATTA M5005_Spy_0186 195504 - 193996 - | transcriptional regulator TERM 214 195392 - 195373 - G 72 -9.4 -3.08088 | AAATTGTCGAAGATA CTGCTTTA TTTT TAAAGCAG TCAAAGTTGTTTGAG TERM 215 195762 - 195737 - H 86 -8.3 -4.81249 | opp_overlap 195737 TTTTAAATTTAAAAA CCTAACCAGCC GGTT AACTGGTCAGG TTTAAACAAGGGAGG TERM 216 195799 - 195776 - H 86 -12.5 -2.71101 | overlap 195773 GGTTTAAACAAGGGA GGGCACCTA AGAAGA TAGGTGCCC AGGAGATTTATGAAA TERM 217 195846 - 195863 + H 70 -4.1 -4.69464 | overlap 195847 AAACCTATTCTCCCA ACGGTTT AGGT AAACCGC TTTTTAGGATGTTTT M5005_Spy_0187 196059 - 196763 + | transposase M5005_Spy_0188 196666 - 197181 + | transposase M5005_Spy_0189 197165 - 197290 + | hypothetical protein TERM 218 197352 - 197335 - f 74 -3.5 -5.2112 | gap 1, opp_overlap 197335 197339, overlap 197339 AAGATGATGAAAAAA GAGATTCT CAA AGAA-CTC TTCTAGTCTTTACGA M5005_Spy_0190 197371 - 197478 + | putative cytoplasmic protein M5005_Spy_0191 197506 - 198177 + | rhomboid family integral membrane protein TERM 219 198288 - 198231 - T 100 -17 -2.88023 | gap 3, opp_overlap 198235 198236 198250, overlap 198233 198250 CTAGTAGGATGAAAT GACTTAAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTT---GTC TTCTCTAGTGCTTTG TERM 220 198289 - 198233 - T 100 -15.5 -2.98761 | opp_overlap 198235 198236 198250, overlap 198231 198250 AGTAGGATGAAATGA CTTAAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTGTCT TCTCTAGTGCTTTGC TERM 221 198235 - 198288 + T 100 -20.9 -3.58802 | gap 1, opp_overlap 198231 198233 198250, overlap 198236 198250 TAGGATGAAATGACT TA-AAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTGTC TTCTCTAGTGCTTTG TERM 222 198236 - 198286 + T 100 -26 -3.36018 | opp_overlap 198231 198233 198250, overlap 198235 198250 AGGATGAAATGACTT AAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTG TCTTCTCTAGTGCTT TERM 223 198250 - 198272 + T 100 -15 -5.10601 | opp_overlap 198231 198233 198250, overlap 198236 198235 TAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT TERM 224 198272 - 198250 - T 100 -15 -5.1286 | opp_overlap 198250 198236 198235, overlap 198231 198233 TAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT hasC.2 199175 - 198276 - | UTP--glucose-1-phosphate uridylyltransferase TERM 225 198323 - 198348 + g 72 -9.1 -3.35046 | overlap 198321 GTTGGATGATGTAGG CTTTCAAGTCA TCTT TGACTTGAGGG TGTTTCAGGGCATAA TERM 226 198435 - 198447 + g 70 -7.7 -3.64487 | opp_overlap 198435 AAACTCACGAGCAAA GACAC GCT GTGTC TTATTGAGGGTATCA TERM 227 198447 - 198435 - G 73 -7.7 -3.80862 | opp_overlap 198435 AAACTCACGAGCAAA GACAC GCT GTGTC TTATTGAGGGTATCA TERM 228 198490 - 198500 + g 76 -6.8 -4.36508 | AGTTGAACTTCATTG CCTG CAC CAGG TTCTTGTTTTTCTAA TERM 229 198685 - 198712 + g 77 -7.8 -4.27441 | gap 1 TCCTCGTGAGGAACC CTCATGACGGCAA TAG TTGCAG-CATGAG TTTCTTCATAGTCAT M5005_Spy_0193 199390 - 199208 - | glycerol-3-phosphate dehydrogenase gpsA 200223 - 199408 - | glycerol-3-phosphate dehydrogenase TERM 230 200381 - 200395 + H 71 -5.6 -4.57543 | CAGGTGAGCTGTTGT CATGGC TTT GCCCTG TTCTTTTTAGTTATT M5005_Spy_0195 200521 - 200970 + | MarR family transcriptional regulator M5005_Spy_0196 200963 - 202669 + | multidrug resistance ABC transporter ATP-binding and permease protein M5005_Spy_0197 202672 - 204456 + | multidrug resistance ABC transporter ATP-binding and permease protein TERM 231 204467 - 204484 + F 90 -8.4 -5.14563 | AATAGATGGCATCAG CTCCGC GTCTTA GCGGAG TTTTTTGGTGAACAA TERM 232 205162 - 205140 - g 79 -4.8 -5.08601 | TGATTTCAAGAAAAA CAACGGTTAT CGC AGATCCGTTG AAATGTGTGAGGAGT M5005_Spy_0198 204574 - 205341 + | putative cytoplasmic protein TERM 233 205356 - 205378 + F 72 -2.6 -5.31545 | ATGGCATGATTAAAA GTGGTCCGTT TAA AGTTGACCGC TTTTTTGCTATTCTT TERM 234 205474 - 205486 + G 73 -7.7 -3.80841 | AATTCGTGGTTTCGA GCTTG TTT CAAGC TTTACTAATCCTGAT dut 205451 - 205897 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 235 205926 - 205952 + F 73 -8.8 -3.31726 | opp_overlap 205914, overlap 205930 AAATGCTTATGACAG CAGACCTATTCT TTA AGAGTGGGTTTG TCTTGTATAGGGGAG TERM 236 205930 - 205948 + F 72 -6 -4.31164 | overlap 205926 GCTTATGACAGCAGA CCTATTCT TTA AGAGTGGG TTTGTCTTGTATAGG TERM 237 207265 - 207252 - g 79 -6.7 -4.57569 | opp_overlap 207252 CTATGCTCCTAAAAA TGCCT TGCA AGGCA TTGATATCCCTCAAG radA 205978 - 207339 + | DNA repair protein RadA M5005_Spy_0201 207528 - 208025 + | carbonic anhydrase TERM 238 208043 - 208058 + F 100 -9 -5.93252 | AGTAGCCAAGTTGTA GAGCTG AATT CAGCTC TTTTTTATTTTTAAA M5005_Spy_0202 208156 - 208866 + | hypothetical protein TERM 239 208883 - 208900 + F 82 -4.1 -5.44119 | opp_overlap 208883 208878 CAAAATAACATAAAA TCAGCTT TTTA GGGCTGA TTTTTTTCGCCTAAG gltX 209048 - 210493 + | glutamyl-tRNA synthetase TERM 240 210556 - 210579 + F 86 -6.1 -5.39755 | opp_overlap 210556 210559 GTCACGACAACGAAA GATTGAAGA TTAAGT TCTTCAGTC TTTTTTATCGTTATC fasB 210888 - 212234 + | sensory transduction protein kinase TERM 241 212377 - 212387 + G 70 -5.4 -4.4078 | opp_overlap 212384 TGCTAATATGATATT TGAC AAA GTCA TTTTGATTGACCAAC fasC 212231 - 213514 + | sensory transduction protein kinase fasA 213518 - 214258 + | response regulator TERM 242 214314 - 214293 - f 77 -5.9 -4.77036 | opp_overlap 214291 214293 TTTTAGGACGAAAAA GCAACATTT CAGG AAATGATGC TCTTATTGAAACATT TERM 243 214482 - 214472 - f 71 -5.4 -4.52589 | opp_overlap 214472 214465 GCTCGGCAGACAAAA TGAC GAT GTCA GTTGTCTTTGTTTGG TERM 244 214534 - 214547 + F 100 -9.5 -5.1675 | opp_overlap 214533 214534 AAATCAGTATTAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA TERM 245 214547 - 214534 - f 73 -9.5 -2.89138 | opp_overlap 214534, overlap 214533 AAATCAGTATTAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA rnpA 214798 - 215157 + | ribonuclease P TERM 246 215508 - 215492 - g 73 -2.2 -5.24129 | GCCCTTTACAAAAAA TATGGG GTTAA CCCTTA TGCTAGTCTCTTACC M5005_Spy_0208 215141 - 215950 + | 60 kDa inner membrane protein YIDC TERM 247 216552 - 216542 - g 70 -8.2 -3.7108 | ATTTGCAGATTGAAA CGCC AGA GGCG GGACGTGTGATTGGT M5005_Spy_0209 215962 - 216876 + | jag protein TERM 248 216890 - 216918 + F 90 -8.3 -5.36441 | AGATCCTAAAAAGAA TCTTTGGTAGTTA GTT TAGCTATCGAAGA TTTTTTGTATGGCCA M5005_Spy_0210 216961 - 217083 + | hypothetical protein rpmH 217191 - 217325 + | 50S ribosomal protein L34 TERM 249 217351 - 217373 + F 79 -5.6 -5.15117 | opp_overlap 217351 TACAACTAAAGTAAA CCAAGAGT GCTCGAG GCTCTTGG TTTTTTAACGTTTTC TERM 250 217635 - 217625 - g 85 -6.8 -5.00851 | ACCAACCAAAGAAAA GCTC ATG GAGC AGTTAAAGGGTGGGA M5005_Spy_0212 217599 - 218303 + | N-acetylmannosamine-6-phosphate 2-epimerase TERM 251 219426 - 219454 + G 71 -7.5 -3.80174 | opp_overlap 219423, overlap 219440 219442 GGACCTAAAAATGTT GTTCGTACAGG TGCTTTC CCTGTAAGAAC TTCTTATGGGGATCT TERM 252 219442 - 219466 + G 77 -10.1 -3.34398 | opp_overlap 219423, overlap 219426 219440 TTCGTACAGGTGCTT TCCCTGTAAGA ACT TCTTATGGGGA TCTTTACAAAGACAA M5005_Spy_0213 218352 - 219671 + | N-acetylneuraminate-binding protein TERM 253 219688 - 219730 + F 89 -7.1 -5.26119 | opp_overlap 219729, overlap 219721 TGTTCCTAACAAGTG GCTTCTTTTCAATGCACAT GTCAA ATGGTCACTGGAAAGAAGC TTTTCTTTTTAGAAA TERM 254 219815 - 219796 - g 81 -5.8 -5.09521 | gap 1, opp_overlap 219796 TCAATAAATTAAAAA TGAGA-GAG ACG CTCATCTCA TACGCTTTCTTAGCT TERM 255 220166 - 220152 - g 72 -8.6 -3.53091 | ACGGTGGTTTGGAAA TGGATC TAT GATCCA ATGTCAGGGATTTTG M5005_Spy_0214 219774 - 220661 + | N-acetylneuraminate transport system permease protein M5005_Spy_0215 220674 - 221504 + | N-acetylneuraminate transport system permease protein M5005_Spy_0216 221661 - 222323 + | hypothetical protein nanH 222335 - 223249 + | N-acetylneuraminate lyase M5005_Spy_0218 223271 - 224209 + | N-acetylmannosamine kinase TERM 256 224337 - 224291 - T 82 -7.4 -4.58663 | opp_overlap 224291 224299 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGTCGTTATTTTC TTTGTCAATAATAGT TERM 257 224291 - 224337 + T 76 -7.4 -3.93963 | opp_overlap 224291, overlap 224299 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGTCGTTATTTTC TTTGTCAATAATAGT M5005_Spy_0219 225150 - 224320 - | RpiR family transcriptional regulator TERM 258 225549 - 225569 + GH 71 -7.5 -3.53091 | opp_overlap 225541 CAAGAAATGGGCGTG GCCTACCAT AAT GTGGTTGGC TTTGACCAGGCCACT TERM 259 226024 - 226004 - gH 87 -8.3 -4.59773 | overlap 226006 226022 GGTCACTTTCAAAAA GGCTCTTGA TAT TCAAGAGGC AGCGCAGCACTTGCC TERM 260 226022 - 226006 - gH 72 -9.5 -2.61004 | overlap 226004 TCACTTTCAAAAAGG CTCTTGA TAT TCAAGAG GCAGCGCAGCACTTG tatD 225402 - 226226 + | sec-independent protein translocase protein M5005_Spy_0221 226198 - 226788 + | ribonuclease M5 ksgA 226902 - 227774 + | dimethyladenosine transferase TERM 261 228017 - 228028 + F 73 -4.4 -4.90266 | opp_overlap 228017 TACCTCAAAAAATCA TCAG TGAT CTGA TTTTTAGTTGATAAA M5005_Spy_0223 228198 - 229070 + | ribosome-associated GTPase TERM 262 229564 - 229548 - g 77 -5.1 -4.8543 | overlap 229549 GAATGTTTAGAAAAA GTGGCTA CCG TAGCCAA ATGGCGAGATGAAAA TERM 263 229563 - 229549 - g 72 -8.6 -3.50535 | overlap 229548 AATGTTTAGAAAAAG TGGCTA CCG TAGCCA AATGGCGAGATGAAA rpe 229080 - 229742 + | ribulose-phosphate 3-epimerase TERM 264 229816 - 229847 + G 83 -11 -3.72141 | opp_overlap 229816 GTCGGTATTGATAGA GGGAGCCTATTTTT ATTA GAAAATGGGCTTCC TTTGAATATGGCTGT M5005_Spy_0225 229735 - 230367 + | thiamin pyrophosphokinase TERM 265 230682 - 230667 - g 78 -4 -5.25803 | AACGCTTAGAAAAAA TTAACC AGCA GGTCAA CCAATCGCTCAAAAA TERM 266 231419 - 231403 - g 82 -3.7 -5.52909 | overlap 231405 TAATATCCAAAAAAA TGCTGAT GAC ATCAGTA AAATTTTAGGCAATG M5005_Spy_0226 230369 - 231640 + | rmuC family protein TERM 267 231904 - 231877 - g 73 -7.8 -3.91911 | gap 1 CTCAGGTTAATCAAA TCACCT-TGCGAA ATG TTCGCCCAGGTGA GCCCAATGATCCAAA cbf 231630 - 232568 + | CMP-binding factor TERM 268 232626 - 232648 + F 100 -9.3 -4.77216 | opp_overlap 232628 TTTTGATGTGCTTAA CACTTATGA TGGTT TCATAAGTG TTTTTGGCTCTTGTT TERM 269 233553 - 233539 - g 78 -7.1 -4.36914 | TGTGTTTGCAGAAAA CGCTC AATCA GAGCG TGAGCAAATGACCTT TERM 270 233618 - 233608 - g 73 -5.4 -4.62783 | opp_overlap 233608, overlap 233595 GATTGATGTCAAAAA CAAC AAT GTTG TTGTAGAAGTTGGTA purR 232835 - 233674 + | purine operon repressor prgA 233665 - 236286 + | surface exclusion protein TERM 271 236338 - 236368 + F 76 -4.1 -5.1166 | gap 1 TCTATTTGACATGAA GTGCCGTCT-GTGT TATT ATATTAGACGGTAC TTTTTACTTTTGGTC rpsL 236494 - 236907 + | 30S ribosomal protein S12 rpsG 236928 - 237398 + | 30S ribosomal protein S7 TERM 272 237689 - 237709 + F 100 -9.7 -4.75372 | opp_overlap 237689 CAAATATTTAGATAA CGGGTAGGT CCT GCCTATCCG TTTTTGCTAAATAGT TERM 273 238342 - 238318 - g 77 -8 -4.16443 | opp_overlap 238316 238318 AGATGAAAGCAGAAA TCTATACCAA CGACC TTGGTACAGA TATTCTTGAAGAAGA fus 237765 - 239843 + | elongation factor G TERM 274 239848 - 239835 - f 76 -4.5 -5.06961 | overlap 239844 239847 ATTAAGAAAAACAAA GGTGA ATAA CCACC ACTAAGAGGTTGAGG TERM 275 239854 - 239880 + F 95 -8.9 -5.21709 | gap 1, opp_overlap 239847 239844 239854 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 276 239880 - 239854 - f 73 -8.9 -3.2613 | gap 1, opp_overlap 239854, overlap 239847 239844 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 277 239985 - 239974 - f 77 -3 -5.48787 | opp_overlap 239974, overlap 239965 AGAACATAGAAAAAA GAAA GCCC TTTC CTATATTTGGTGGGT plr 240191 - 241201 + | glyceraldehyde-3-phosphate dehydrogenase TERM 278 241357 - 241383 + T 86 -5.2 -5.72616 | opp_overlap 241357 AACTGTATACAAAAA GGCTAAGATG GAAGGGG TGTCTTAGCC TTTTTTTGTCTGACT TERM 279 241383 - 241357 - T 70 -3.8 -4.98522 | opp_overlap 241357 AACTGTATACAAAAA GGCTAAGA TGGAAGGGGTG TCTTAGCC TTTTTTTGTCTGACT M5005_Spy_0234 241543 - 241427 - | hypothetical protein TERM 280 241516 - 241530 + g 85 -5.7 -5.26918 | TCAGTCTTCTGTAAG CTGAC GATAA GTCAG TTTTTTCTGCCATAT M5005_Spy_0235 242425 - 241685 - | amino acid transport ATP-binding protein TERM 281 241969 - 241984 + g 73 -5.4 -4.57569 | CAGATAAGGCTCTGG CAATGG CAAC CCGTTG TTTTTGCCCCCCTGA M5005_Spy_0236 243986 - 242418 - | ABC transporter amino acid-binding protein/amino acid ABC transporter permease protein TERM 282 243966 - 243978 + g 80 -6.3 -4.81551 | opp_overlap 243964 243966 CAAGGCGACCAAACA GCTAA GGA TTAGC TTTTTCATATAGGTC TERM 283 244930 - 244950 + G 71 -3.9 -5.00196 | opp_overlap 244932, overlap 244921 244934 GCTATTTGGCAAAGT CATTCCTCT GGT AGAGGTAGG TTTTCTTCTTTGGCA M5005_Spy_0237 244184 - 246082 + | hypothetical protein uppP 246148 - 246987 + | undecaprenyl pyrophosphate phosphatase TERM 284 247011 - 247034 + F 100 -12.4 -4.83759 | ATCGTTTAGGATGTT GCGACAGACC TTGG GGACTGTCGC TTTTTAAATTTCCTT TERM 285 247166 - 247149 - g 73 -5.6 -4.62772 | TGGAAATGAAACAAA TTAGCG AGACAA CGCTAA AAATAACAATTAGTA TERM 286 247262 - 247242 - g 82 -4 -5.4505 | TTCCTCAAGAAAAAA CAGAAGAG TTTTT CTATTCTG TGATGGACGAACTCG mecA 247133 - 247894 + | adaptor protein TERM 287 248533 - 248548 + GF 85 -5.4 -5.33848 | overlap 248535 CATTTTGGTCTTGAT TTCTGC TATT GCAGGA TTTTTTCCTTATAAT M5005_Spy_0240 248045 - 249070 + | undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase rgpG 249040 - 249165 + | putative cytoplasmic protein M5005_Spy_0242 249192 - 249962 + | ABC transporter ATP-binding protein M5005_Spy_0243 250057 - 251319 + | ABC transporter-associated protein TERM 288 251564 - 251580 + G 71 -6.5 -4.2704 | AATATGAGGCCAGTC GCCAGCA GGT TGCTGAC TTTATTCATGCTAAA nifS3 251350 - 252576 + | cysteine desulfhydrase/selenocysteine lyase nifU 252563 - 253042 + | iscU protein M5005_Spy_0246 253035 - 254453 + | ABC transporter-associated protein TERM 289 254513 - 254530 + T 77 -5.6 -4.90013 | TTATGAGTTGTAGTA CTAACC CCAAGT GGTTAG TTTTTAGTTGCCTTG TERM 290 254557 - 254604 + T 77 -8.7 -3.65224 | opp_overlap 254560 254562 254571, overlap 254561 254562 254564 254571 CTTGAACACGTAAGA TAACATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAATTCA TTATTGGCGTCCCAT TERM 291 254601 - 254560 - T 87 -10.4 -3.71517 | opp_overlap 254557 254561 254562 254564 254571, overlap 254562 254571 GAACACGTAAGATAA CATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAAT TCATTATTGGCGTCC TERM 292 254561 - 254600 + T 100 -13.9 -3.54158 | opp_overlap 254560 254562 254571, overlap 254557 254562 254564 254571 AACACGTAAGATAAC ATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAA TTCATTATTGGCGTC TERM 293 254599 - 254562 - T 100 -17.4 -3.42884 | opp_overlap 254562 254561 254557 254564 254571, overlap 254560 254571 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 294 254562 - 254599 + T 100 -17.4 -2.72013 | opp_overlap 254560 254562 254571, overlap 254561 254557 254564 254571 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 295 254564 - 254597 + T 100 -15.6 -2.89971 | opp_overlap 254562 254560 254571, overlap 254562 254561 254557 254571 ACGTAAGATAACATA TCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGA TAATTCATTATTGGC TERM 296 254571 - 254590 + T 83 -7.9 -4.81685 | opp_overlap 254571 254562 254560, overlap 254564 254562 254561 254557 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT TERM 297 254590 - 254571 - T 88 -7.9 -4.88711 | opp_overlap 254564 254562 254561 254557 254571, overlap 254562 254560 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT M5005_Spy_0247 255786 - 254605 - | D-alanyl-D-alanine carboxypeptidase TERM 298 255264 - 255242 - G 71 -6.2 -4.16921 | opp_overlap 255242 255241 TAATAACCTTGAAAA GCTTGTGCTG CTG CACCACTAGC GTTTGAAAAATGAGT TERM 299 255925 - 255902 - R 85 -6.8 -5.24003 | gap 1 AATAAAAATGAAAAA GACTG-CAGAA GTA CTCTGTCAGTC AATGTCATACAAAAA TERM 300 255978 - 255961 - R 79 -8.5 -3.89346 | GTGTTATTCTATAAA GAGGTAT TGAC ATACCTC ACAAAACGGTTCCAC dacA2 257186 - 255954 - | D-alanyl-D-alanine carboxypeptidase TERM 301 256827 - 256811 - G 71 -9.5 -2.78679 | opp_overlap 256810 256809, overlap 256810 TTTTTTCAGCTAAAG CAATAGC GGG GCTATTG GCGTTATTAACAACT TERM 302 258954 - 258968 + G 73 -10 -2.78384 | opp_overlap 258953 258945 GAAACATCAACTCAC GAAGCC CAA GGCTTC TATGCTGAGACCCCA oppA 257517 - 259487 + | oligopeptide-binding protein TERM 303 259542 - 259490 - f 79 -4.4 -5.26119 | gap 1, opp_overlap 259494 259494 259502, overlap 259493 259494 CGTTGAAAAATAAAA CGAT-GTTCAAAAGAACTTTCTC GTTTATGT GAGGGAGTTCTTTTGAACTATTG AGGACAACTATGAAA TERM 304 259494 - 259537 + F 100 -15.6 -3.01924 | opp_overlap 259494 259493 259490, overlap 259494 259502 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTCGT TTAT GTGAGGGAGTTCTTTTGAAC TATTGAGGACAACTA TERM 305 259537 - 259494 - f 75 -9.8 -2.64578 | opp_overlap 259494 259494 259502, overlap 259493 259490 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTC GTTTATGT GAGGGAGTTCTTTTGAAC TATTGAGGACAACTA TERM 306 260315 - 260301 - g 74 -4.3 -4.87665 | opp_overlap 260301, overlap 260308 CCGTAGCTACAAAAA TCCAA AATCA TTGGA TGATATCACCAAGGT oppB 259540 - 261054 + | oligopeptide transport system permease protein oppC 261054 - 261980 + | oligopeptide transport system permease protein oppD 261989 - 263059 + | oligopeptide transport ATP-binding protein TERM 307 263107 - 263089 - g 86 -10.4 -4.01564 | TAAAAGACCTAGAAA TTTCCTTC GGA GAAGGAAA GAAAAAATTTGTTGC oppF 263052 - 263975 + | oligopeptide transport ATP-binding protein TERM 308 264044 - 264054 + T 83 -6.8 -4.83677 | overlap 264023 GTTTTGTATTGTAGA GGAC TAA GTCC TTTTAGTTTTATTTT TERM 309 264166 - 264181 + T 89 -3.3 -5.86465 | AGAACTCGTCTTTGT CCATT TTTTAT AATGG TTTTTTTGTCTTCTT TERM 310 264221 - 264233 + T 77 -3.3 -5.47218 | opp_overlap 264221 GATGCTTCTTTCAAA CGGAG TTC CTCGG TTTTTTTAAGTAAGC M5005_Spy_0254 264362 - 264216 - | transposase TERM 311 264363 - 264373 + r 82 -5.4 -5.31072 | CTCTTGTTTTCTCAA CAGT ATA ACTG TTTTTCTTATATTGT TERM 312 264612 - 264573 - R 100 -9.4 -5.27923 | opp_overlap 264575 264582, overlap 264575 TAATTTCATAAAAAA TACCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGGTG TAGTTCAAGGCTTTT TERM 313 264610 - 264575 - R 100 -12 -4.26475 | opp_overlap 264575 264582, overlap 264573 ATTTCATAAAAAATA CCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGG TGTAGTTCAAGGCTT TERM 314 264575 - 264610 + r 95 -14.9 -2.90571 | opp_overlap 264575 264573, overlap 264582 ATTTCATAAAAAATA CCCCGAACGTTAGAT TTTTTT GTCTAACGTTTGGGG TGTAGTTCAAGGCTT M5005_Spy_0255 264871 - 264737 - | hypothetical protein TERM 315 264936 - 264922 - H 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 316 267219 - 267200 - H 91 -12.2 -3.62096 | opp_overlap 267199 267198 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 317 267911 - 267878 - H 71 -8.9 -3.03412 | overlap 267877 267900 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 318 270123 - 270140 + H 89 -6.3 -5.61824 | opp_overlap 270123, overlap 270114 GGCGGAGTAGAGAGA GGTAGGA AGCG TCCTATC TTTTTTTGCATTTTA TERM 319 270280 - 270303 + H 100 -14 -5.73339 | opp_overlap 270280 GCATAATGAAAAAAA CAACAGGACA TTAA TGTCCTGTTG TTTTTTTGTGGTTCT TERM 320 270303 - 270280 - H 100 -14 -5.68023 | opp_overlap 270280 GCATAATGAAAAAAA CAACAGGACA TTAA TGTCCTGTTG TTTTTTTGTGGTTCT comX1.1 270293 - 270844 + | competence-specific sigma factor TERM 321 271142 - 271169 + F 100 -12.2 -5.04597 | AATCATTTGTGATTA TCTTATCAGGAG TTGA CTCTTGATAAGA TTTTTGTATATCAGT M5005_Spy_0257 271455 - 272159 + | transposase M5005_Spy_0258 272062 - 272577 + | transposase M5005_Spy_0259 272561 - 272665 + | hypothetical protein M5005_Spy_0260 272683 - 273267 + | putative lipase TERM 322 273343 - 273327 - g 87 -5.1 -5.4659 | GAAGATAAAGAAAAA GCTGG TTTTACG CCAGC TGCTGCTTTGAAAAA M5005_Spy_0261 273267 - 274385 + | GTP-binding protein YqeH TERM 323 274426 - 274411 - g 78 -2.6 -5.43866 | GAAGTTGGAAAAAAA TGCTTA CAAG TAAACA AAGAGCTTTCTTAAA M5005_Spy_0262 274410 - 274718 + | RNA-binding protein nadD 274787 - 275419 + | nicotinic acid mononucleotide adenylyltransferase TERM 324 275882 - 275870 - g 70 -3.3 -4.86001 | opp_overlap 275870 ATGACGCTAGAAAAA TCGCG AAG CTCGA TTTGAATCAGGCTGT M5005_Spy_0264 275416 - 276009 + | HAD superfamily hydrolase TERM 325 276282 - 276297 + G 82 -4 -5.40072 | TTGCTTGATTTGACC GATGTG GTGG TACATC TTTTTTTAGAAGACG M5005_Spy_0265 276009 - 276386 + | iojap superfamily protein TERM 326 276400 - 276418 + F 76 -6.7 -4.60487 | opp_overlap 276398 276400 AATGTTACAAAGAGA CCTTGTC AATAC GACAGGG TTTTTGAGGATGATA TERM 327 277143 - 277156 + G 80 -4.5 -5.26918 | opp_overlap 277143 AGGAGCCAACTAAGA CCAGC AAGC GTTGG TTTTTTGTAGCATAT M5005_Spy_0266 276428 - 277177 + | methyltransferase TERM 328 277843 - 277831 - g 76 -3.4 -5.28176 | GCTATCCACAAAAAA CACA AAAAA TGTG GGAAATCTTTGCTGG M5005_Spy_0267 277431 - 278537 + | hypothetical protein TERM 329 278532 - 278522 - f 84 -5.4 -5.58179 | opp_overlap 278529 TATTATAATAAAAAA TGAG AGG CTCA ATTAAACTCTAATTG TERM 330 278529 - 278549 + F 93 -7 -5.41746 | opp_overlap 278522 ATAAAAAATGAGAGG CTCAATTA AACTC TAATTGAG TTTTTTTGGGGGCTT M5005_Spy_0268 278874 - 279029 + | hypothetical protein M5005_Spy_0269 279019 - 279735 + | hypothetical protein TERM 331 279757 - 279778 + F 86 -8.1 -4.68994 | opp_overlap 279757 ATAGAATAATAAAAA GAGTTGAAA TCTA TTTCAGCTC TTTTTAAGTGATGCT TERM 332 279778 - 279757 - f 84 -5.9 -5.35721 | opp_overlap 279757 ATAGAATAATAAAAA GAGTTGAAA TCTA TTTCAGCTC TTTTTAAGTGATGCT TERM 333 279977 - 279963 - g 75 -10 -3.20207 | AACAGTATTTAGGAA GGGCAA CAA TTGCCC TAGCATCGACCCTTG M5005_Spy_0270 279938 - 280780 + | ABC transporter substrate-binding protein TERM 334 281506 - 281496 - g 70 -5.4 -4.3453 | overlap 281492 AAGGCTAAATACAAA TCAG TAG CTGA TCTGCCAAATGGTAC M5005_Spy_0271 281109 - 281954 + | ABC transporter substrate-binding protein M5005_Spy_0272 282204 - 283268 + | ABC transporter ATP-binding protein M5005_Spy_0273 283269 - 283961 + | ABC transporter permease protein TERM 335 284000 - 283963 - T 100 -10.2 -4.57482 | gap 2, opp_overlap 283968 283971, overlap 283968 TTAGTCATAAATAAA CGAAACAACACCCTAAGT AAAA ACTTAGGGTGTTGTT--G TTTAGATGATGTCAT TERM 336 283968 - 283997 + T 100 -18.1 -3.98075 | opp_overlap 283963 283968, overlap 283971 CATAAATAAACGAAA CAACACCCTAAGT AAAA ACTTAGGGTGTTG TTGTTTAGATGATGT TERM 337 283997 - 283968 - T 100 -18.1 -4.29621 | opp_overlap 283968 283971, overlap 283963 CATAAATAAACGAAA CAACACCCTAAGT AAAA ACTTAGGGTGTTG TTGTTTAGATGATGT TERM 338 283971 - 283994 + T 100 -14 -4.10744 | opp_overlap 283968 283963, overlap 283968 AAATAAACGAAACAA CACCCTAAGT AAAA ACTTAGGGTG TTGTTGTTTAGATGA braB 285385 - 284015 - | branched-chain amino acid transport system carrier protein M5005_Spy_0275 285619 - 286833 + | serine/threonine transporter SstT TERM 339 286856 - 286879 + T 100 -11.1 -6.01369 | opp_overlap 286856 TAACATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTATTATTTA TERM 340 286879 - 286856 - T 100 -11.1 -5.27399 | opp_overlap 286856 TAACATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTATTATTTA M5005_Spy_0276 287562 - 286888 - | potassium uptake protein M5005_Spy_0277 288963 - 287572 - | potassium uptake protein TERM 341 288444 - 288425 - G 71 -6.4 -4.17089 | overlap 288426 288428 288440 CCTAAATTGTCAAAA CCAGCGTT ACAA AACGCCGA CACAGCTAAAAAAAT TERM 342 289019 - 289002 - R 82 -5.6 -5.23016 | opp_overlap 289002 289001 AAATAAGTTAAAAAA GCTAAG TTTCAT CTTAGC CTTTGGTACTATTTT gidB 289746 - 289033 - | glucose-inhibited division protein B TERM 343 289590 - 289603 + g 84 -6.7 -4.85918 | AATCATAAAAATGCT TGAGG TAAA CCTCA TTTTCTTCTGTAATA TERM 344 290262 - 290243 - g 74 -6.5 -4.48175 | AAAAGCTAACGAAAA CTTCTTG AAATTA CAAGAAG AGTTGACCAATACGG lemA 289896 - 290453 + | hypothetical protein TERM 345 290530 - 290542 + G 70 -3.4 -4.85618 | opp_overlap 290530 ATTTCACAAAATAAG CAAC GAACA GTTG TTTTATTAGTTGTTT TERM 346 290871 - 290856 - g 83 -9 -4.09864 | opp_overlap 290857 290858, overlap 290857 ATCTAGCCCTCAAAA TGCTGC TGTT GCAGCA ACGACAGGTTTACTT M5005_Spy_0280 290500 - 291396 + | heat shock protein HtpX TERM 347 291393 - 291424 + F 79 -3.8 -5.51046 | gap 1 AAGGTTAAAAAACAT GTGAGCGTTTGGG GTTTTTG CTCAAGC-CTCAC TTTTTTATGTCTTTG TERM 348 292135 - 292112 - g 83 -6.1 -5.093 | opp_overlap 292112 292129 TCTAAAAGAAGAAAA GCAAAAAGA AAATAA TCCTTTTGC TAGCTTGCAAGGGTT M5005_Spy_0281 291630 - 292163 + | putative cytoplasmic protein TERM 349 292480 - 292465 - g 74 -6.2 -4.43681 | opp_overlap 292464 292460 292465 TATTGAAGATGAAAA GAATCT GGCT AGATTC GTTTCTCTTGAGCTG covR 292430 - 293116 + | response regulator TERM 350 293302 - 293332 + G 82 -8.4 -4.27316 | AAGCTGTAAATATTG TTAGAGTTCGTCTT TCT GAGGTGGACTCTAA TTTTACATTAGAGAA covS 293259 - 294623 + | transmembrane histidine kinase M5005_Spy_0284 294838 - 295332 + | transcriptional regulator NrdR dnaB 295316 - 296491 + | replicative DNA helicase TERM 351 297101 - 297085 - g 70 -2.9 -5.09895 | opp_overlap 297086, overlap 297086 CATTGATGTAAAAAA TGCCATT TCA AACGGCT CTGTTAAAGAAGAAA dnaI 296492 - 297394 + | primosomal protein DnaI engA 297457 - 298767 + | GTP-binding protein EngA TERM 352 298821 - 298853 + F 95 -8.5 -4.92783 | opp_overlap 298821 TCTCATCATTGATAA GGACTGTGTTGTGTA TGT TACAGGAGACAGTCC TTTTTATAATACCTT snf 298974 - 302072 + | SWF/SNF family helicase M5005_Spy_0289 302315 - 302917 + | putative cytoplasmic protein murC 302957 - 304285 + | UDP-N-acetylmuramate--L-alanine ligase TERM 353 304291 - 304305 + F 100 -11.4 -4.58466 | opp_overlap 304289 TAACCAATAACATGT CCTGCC TTA GGCAGG TTTTCTCATTCTAAA M5005_Spy_0291 304331 - 304813 + | acetyltransferase TERM 354 305836 - 305819 - g 76 -3.5 -5.32699 | opp_overlap 305828 GGAAAGACCAAAAAA GCTAAAA CACC TTTTAAC GAGAAGGATTTTTTG TERM 355 306467 - 306444 - g 81 -6.8 -4.68593 | opp_overlap 306446 TTTACTATGCAAAAA CATTTGAAGA ACAC TCTGCAAATG TTGAAAAATATGTGA M5005_Spy_0292 304931 - 306499 + | aminodeoxychorismate lyase TERM 356 306539 - 306493 - f 100 -23.5 -2.85503 | gap 1, opp_overlap 306493 306501 306507, overlap 306501 306507 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 357 306493 - 306539 + F 100 -23.5 -3.33696 | gap 1, opp_overlap 306493 306501 306507, overlap 306501 306507 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 358 306501 - 306532 + F 100 -20.4 -4.10331 | opp_overlap 306493 306501 306507, overlap 306493 306507 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 359 306532 - 306501 - f 100 -20.4 -3.82097 | opp_overlap 306501 306493 306507, overlap 306493 306507 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 360 306507 - 306526 + F 100 -12.2 -4.42513 | opp_overlap 306501 306493 306507, overlap 306501 306493 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT TERM 361 306526 - 306507 - f 100 -12.2 -4.36903 | opp_overlap 306507 306501 306493, overlap 306501 306493 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT greA 306524 - 307054 + | transcription elongation factor GreA TERM 362 307253 - 307230 - T 71 -3.1 -5.17488 | overlap 307233 AATACCAAAAGAAAA GACCAGCAC CTTAAT GTACTGACC CCAAAAAGTTGGACA M5005_Spy_0294 307412 - 307269 - | transposase TERM 363 307573 - 307620 + r 100 -15.8 -5.38951 | overlap 307574 ATCGTTAGATTTTTT TGATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATCG TTTTTTGTCTAACTT TERM 364 307574 - 307619 + r 100 -17.1 -3.81744 | overlap 307573 TCGTTAGATTTTTTT GATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATC GTTTTTTGTCTAACT M5005_Spy_0295 308600 - 307677 - | OxaA-like protein precursor M5005_Spy_0296 308960 - 308682 - | acylphosphatase M5005_Spy_0297 309630 - 309115 - | transposase M5005_Spy_0298 310237 - 309533 - | transposase M5005_Spy_0299 310535 - 311272 + | 23S rRNA methyltransferase M5005_Spy_0300 311311 - 311811 + | HAD superfamily hydrolase M5005_Spy_0301 311826 - 312515 + | integral membrane protein TERM 365 312557 - 312509 - f 100 -18.8 -4.1552 | gap 1, opp_overlap 312518 312525, overlap 312512 312525 TATTTTTGGAAGAAA TGATTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA-CA GGATAAGTAAACTGT TERM 366 312555 - 312512 - f 100 -21.6 -3.10244 | opp_overlap 312518 312525, overlap 312509 312525 TTTTGGAAGAAATGA TTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA CAGGATAAGTAAACT TERM 367 312518 - 312549 + F 95 -14.8 -3.02511 | opp_overlap 312512 312509 312525, overlap 312525 AAGAAATGATTAACA TTAAAAAGTGAGTA TAAC TACTCACTTTTTAA TGTTAACAGGATAAG TERM 368 312542 - 312525 - f 95 -8.5 -4.89233 | opp_overlap 312518 312525, overlap 312512 312509 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA TERM 369 312525 - 312542 + F 95 -8.5 -4.87626 | opp_overlap 312525 312512 312509, overlap 312518 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA M5005_Spy_0302 312693 - 312935 + | hypothetical protein TERM 370 313057 - 313080 + F 100 -11.1 -4.82667 | opp_overlap 313057 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA TERM 371 313080 - 313057 - f 100 -11.1 -4.85782 | opp_overlap 313057 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA glr 313113 - 313907 + | glutamate racemase M5005_Spy_0304 313904 - 314890 + | fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein M5005_Spy_0305 314869 - 315390 + | putative phosphoesterase M5005_Spy_0306 315387 - 315848 + | CBS domain-containing protein TERM 372 316185 - 316170 - g 72 -3.2 -5.14563 | TTTTCTATCAAAAAA CCCC TTTTGTGT GGGG GCAATTAATCAGCTT xerD 315845 - 316591 + | site-specific tyrosine recombinase XerD-like protein TERM 373 317092 - 317055 - g 70 -2.8 -5.03715 | opp_overlap 317066, overlap 317090 AGCAGTTTTAAAAAA CAACCATACAGTCATC GAGCGT GATGATTATAAGATTG AAGACATGATGGCTT scpA 316591 - 317292 + | segregation and condensation protein A scpB 317289 - 317840 + | segregation and condensation protein B M5005_Spy_0310 317939 - 318685 + | ribosomal large subunit pseudouridine synthase B M5005_Spy_0311 318682 - 318945 + | hypothetical protein M5005_Spy_0312 319123 - 319671 + | 23S rRNA methyltransferase TERM 374 319734 - 319676 - f 76 -9.9 -2.77539 | gap 1, opp_overlap 319677 319686, overlap 319686 AACTAAAATAATGGA CTTTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAAA- TTTAGTCAAAGCTAT TERM 375 319677 - 319734 + F 100 -22.5 -3.73402 | opp_overlap 319676 319686, overlap 319686 ACTAAAATAATGGAC TTTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAAA TTTAGTCAAAGCTAT TERM 376 319725 - 319686 - f 78 -7.8 -4.09864 | opp_overlap 319677 319686, overlap 319676 ATGGACTTTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 377 319686 - 319725 + F 100 -14.4 -4.17491 | opp_overlap 319686 319676, overlap 319677 ATGGACTTTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 378 319947 - 319974 + F 89 -7.2 -5.21709 | CAATAACGACGGAAC TTCTTTCAATTT GAAA AAATTGGAGGAA TTTTTTAATGTCAAA M5005_Spy_0313 319982 - 320545 + | riboflavin transporter TERM 379 320828 - 320843 + G 70 -3.2 -4.86621 | opp_overlap 320828 GTTTATCTTGTCAAA TGGTGC CATT GCAGCA TTTTTGATTACGACT M5005_Spy_0314 320547 - 321200 + | phosphatidylglycerophosphatase B-like protein TERM 380 321236 - 321286 + F 81 -7.9 -4.43879 | opp_overlap 321242, overlap 321237 321242 GCTTATTTAAATCAT TTAGAATAACATTGGCAAGCA TCACCCCCT TGATTGCCAGTGTTATTTTAG TTTTAGTTAGATGAT TERM 381 321237 - 321285 + F 77 -9.2 -3.25604 | opp_overlap 321242, overlap 321236 321242 CTTATTTAAATCATT TAGAATAACATTGGCAAGCA TCACCCCCT TGATTGCCAGTGTTATTTTA GTTTTAGTTAGATGA TERM 382 321242 - 321280 + F 83 -6.9 -4.72729 | opp_overlap 321242, overlap 321237 321236 TTAAATCATTTAGAA TAACATTGGCAAGCA TCACCCCCT TGATTGCCAGTGTTA TTTTAGTTTTAGTTA M5005_Spy_0315 321493 - 322413 + | Fe-S oxidoreductase TERM 383 322555 - 322581 + G 76 -7.4 -4.22407 | ATGGAAATGATACTG CCTTTTTGGC ACAATTA GCTAAAAAGG TTTATGCTTTTGATG TERM 384 322955 - 322969 + G 75 -2.8 -5.2112 | opp_overlap 322955 TCAGCCTCTTAATCA GGTG AATACCC CACC TTTTTTAATCATGTT M5005_Spy_0316 322452 - 323006 + | SAM-dependent methyltransferase hlyX 323139 - 324473 + | putative hemolysin TERM 385 324468 - 324488 + F 100 -11.2 -4.7254 | opp_overlap 324468 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT TERM 386 324488 - 324468 - f 87 -11.2 -3.1994 | opp_overlap 324468 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT TERM 387 324532 - 324517 - g 71 -4.8 -4.48987 | GTGTTATAATGAAAA TGTAAA AACG TTTACA AGTAATGAAGGAGAT TERM 388 325298 - 325288 - g 75 -5.4 -4.7416 | TCAAAATGCTAAAAA TCTG ATG CAGA CCGAATCTTACACAG pflC 324479 - 325342 + | pyruvate formate-lyase activating enzyme TERM 389 325356 - 325372 + F 83 -7.3 -4.67556 | AAGAGCTGTTATAGG GTTGAGG TTT CTTCAAC TTTTTAAAGTATTAT TERM 390 325883 - 325868 - g 74 -4.7 -4.87803 | TATGTTTAAAGAAAA TGGCA TCGAGG TGCCA AAAGCGATTGCAGGG ppaC 325473 - 326408 + | putative manganese-dependent inorganic pyrophosphatase TERM 391 326451 - 326427 - f 71 -6.5 -4.11773 | opp_overlap 326427 326441 AAAGACGCTTTAAAA GGACTTGAT TTTTTTG ACCAAGTCC TTTTGTCACTCTTCT M5005_Spy_0320 326484 - 327137 + | putative cytoplasmic protein TERM 392 327170 - 327142 - T 71 -5.3 -4.58424 | opp_overlap 327144, overlap 327144 TAGCACCATAGAAAA GAGCTAGGAACAA GGA CTGTTCTTAGCTT TTTGAGTGCTTTTAT TERM 393 327168 - 327144 - T 73 -7.9 -3.89814 | opp_overlap 327144, overlap 327142 GCACCATAGAAAAGA GCTAGGAACAA GGA CTGTTCTTAGC TTTTTGAGTGCTTTT TERM 394 327144 - 327168 + T 100 -9.4 -4.7329 | opp_overlap 327144 327142 GCACCATAGAAAAGA GCTAGGAACA AGGAC TGTTCTTAGC TTTTTGAGTGCTTTT fhuG 328108 - 327182 - | ferrichrome transport system permease protein fhuB 329232 - 328180 - | ferrichrome transport system permease protein TERM 395 328417 - 328407 - G 75 -5.4 -4.77775 | AGCCGATAAAAGAAA TGCT TCC AGCA ATGGCTACAGCTGCT fhuD 330154 - 329222 - | ferrichrome-binding protein TERM 396 329859 - 329872 + g 76 -2.4 -5.46629 | opp_overlap 329853, overlap 329853 329856 TCTAAATCAGTTGCA GCAA CTTGCT TTGC TTTTTTTACAGTCTT fhuA 330962 - 330180 - | ferrichrome transport ATP-binding protein TERM 397 330906 - 330894 - G 80 -6.3 -4.70583 | TTCAGGAATATAAAA CGATA ATT TATCG ATGATGGTACGCTGT TERM 398 331108 - 331095 - R 87 -6.7 -5.40625 | opp_overlap 331095, overlap 331088 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 399 331095 - 331108 + r 85 -6.7 -5.2422 | opp_overlap 331088 331095 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 400 331197 - 331147 - R 73 -3.7 -5.0917 | overlap 331149 GTATTAAAAAAGAAA TATTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAACG TCAACATACTCTAGA TERM 401 331195 - 331149 - R 85 -8.5 -4.15047 | overlap 331147 ATTAAAAAAGAAATA TTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAA CGTCAACATACTCTA murE 332653 - 331208 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase M5005_Spy_0326 332741 - 334375 + | export protein for polysaccharides and teichoic acids TERM 402 334393 - 334419 + F 91 -5.3 -5.84381 | gap 1, opp_overlap 334393 TAATGACACCAAGAA CGATTTCG-TGA GTGC TTATCGAAATCG TTTTTTTCTTAATGA upp 334543 - 335172 + | uracil phosphoribosyltransferase clpP 335396 - 335986 + | ATP-dependent Clp protease proteolytic subunit TERM 403 335998 - 336033 + F 74 -9.2 -3.01712 | opp_overlap 336004 336007, overlap 336004 ATAAAGAGGATCTCT GCAAAAGTATTCTAGA AACT TCTAGGATGCTTTTTC TCTTAGAAAGGAAAA TERM 404 336004 - 336027 + F 84 -6.8 -5.0916 | opp_overlap 336004 336007, overlap 335998 AGGATCTCTGCAAAA GTATTCTAGA AACT TCTAGGATGC TTTTTCTCTTAGAAA M5005_Spy_0329 336478 - 336753 + | hypothetical protein TERM 405 336759 - 336747 - f 81 -7.7 -4.40037 | AAACAACCATCAAAA GGGTT AAC AACCC CCTAGTTACTGATTA TERM 406 336926 - 336948 + F 70 -4.2 -4.7329 | gap 1, opp_overlap 336926, overlap 336945 TGGTCCTAAAATAGA GCACTG-CA AAGATA TGCCAGTGC TTTTTAGCTCATTTT tdk 337002 - 337637 + | thymidylate kinase dnaX 337655 - 338530 + | DNA polymerase III subunit delta' M5005_Spy_0332 338549 - 338788 + | tpl protein TERM 407 338965 - 338947 - g 70 -3.1 -4.98616 | opp_overlap 338947 TTAAAATACTAAAAA GTCAAGG GTTAT CATTGAC TTTGGGTAAAGCAAC M5005_Spy_0333 338877 - 339038 + | signal peptidase-like protein TERM 408 339401 - 339381 - g 81 -6.9 -4.67011 | opp_overlap 339381 AACGGTAGCTAAAAA TCCTTCC AAACAAA GGAAGGA TCACTTAGAGGGAAT M5005_Spy_0334 339193 - 339516 + | DNA replication intiation control protein YabA TERM 409 339568 - 339555 - g 86 -2.4 -5.88197 | opp_overlap 339555, overlap 339559 339560 TTAAAGACAAAAAAA CAAG CGGAAC CTTG TATTTGGTTCCAACC TERM 410 340198 - 340182 - g 70 -7.9 -3.73775 | opp_overlap 340182, overlap 340184 CCTACCTTGAGGAAA CACCCCT CAA AGGGGAG TGTCTGCTGATTGTG TERM 411 340196 - 340184 - g 74 -9.1 -3.45324 | opp_overlap 340182, overlap 340182 TACCTTGAGGAAACA CCCCT CAA AGGGG AGTGTCTGCTGATTG M5005_Spy_0335 339521 - 340384 + | corrin/porphyrin methyltransferase M5005_Spy_0336 340411 - 340803 + | hypothetical protein TERM 412 340839 - 340813 - T 100 -9.6 -5.50925 | opp_overlap 340813 AACTAAGAGAAAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA TERM 413 340813 - 340839 + T 100 -9.6 -4.323 | opp_overlap 340813 AACTAAGAGAAAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA cutC 341479 - 340850 - | copper homeostasis protein TERM 414 341294 - 341283 - G 73 -5.8 -4.60797 | TCGTTATAGACAAAA TCGC CACC GCGA GGTCGAATCATGGTC TERM 415 341752 - 341736 - H 80 -6.5 -4.7871 | overlap 341738 AATGATGACCAAAAA CAGGCGC CTC ACGCCTA AAACAGTTACACTAA TERM 416 341750 - 341738 - H 73 -6.9 -4.00443 | overlap 341736 TGATGACCAAAAACA GGCGC CTC ACGCC TAAAACAGTTACACT M5005_Spy_0338 341778 - 342134 + | arsenate reductase family protein TERM 417 342140 - 342197 + T 100 -11.7 -4.62471 | gap 1, opp_overlap 342135 342155, overlap 342144 342155 TTTAGGATAATGCGA CAAAGTCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGA-TCTG TTTTTAGAAATTAGA TERM 418 342144 - 342195 + T 100 -13.4 -3.92577 | gap 1, opp_overlap 342135 342155, overlap 342140 342155 GGATAATGCGACAAA G-TCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGATC TGTTTTTAGAAATTA TERM 419 342155 - 342183 + T 88 -7.5 -5.08169 | opp_overlap 342155, overlap 342144 342140 CAAAGTCTCAAAAAA GGACAAGGC AACATTATAAC GCCTTGTCC TTTTTTGGGATCTGT TERM 420 342183 - 342155 - T 100 -10.3 -5.07107 | opp_overlap 342155 342144 342140 CAAAGTCTCAAAAAA GGACAAGGCAACA TTA TAACGCCTTGTCC TTTTTTGGGATCTGT exoA 343119 - 342208 - | exodeoxyribonuclease III TERM 421 343293 - 343282 - g 73 -2.2 -5.27923 | CAATGGCACAAAAAA CAGT CATC ACCG AAGAAACAACCGATT lctO 343269 - 344450 + | L-lactate oxidase M5005_Spy_0341 344713 - 349656 + | lactocepin TERM 422 349656 - 349642 - f 83 -5 -5.44119 | TTTAGCCGAAAAAAA TCAACC AAA GATTGA TAACAAAGCGCAAAG TERM 423 349822 - 349784 - f 100 -20.6 -4.21945 | opp_overlap 349784 349786 349794, overlap 349786 349794 AGGAACAGACATAAA GACCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 424 349784 - 349822 + F 100 -20.6 -3.87505 | opp_overlap 349784 349786 349794, overlap 349786 349794 AGGAACAGACATAAA GACCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 425 349786 - 349820 + F 100 -23.2 -3.51879 | opp_overlap 349784 349786 349794, overlap 349784 349794 GAACAGACATAAAGA CCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGG TGTTATTGTCGTGTG TERM 426 349820 - 349786 - f 100 -23.2 -3.6979 | opp_overlap 349786 349784 349794, overlap 349784 349794 GAACAGACATAAAGA CCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGG TGTTATTGTCGTGTG TERM 427 349812 - 349794 - f 100 -13.2 -4.59207 | opp_overlap 349786 349784 349794, overlap 349786 349784 ATAAAGACCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 428 349794 - 349812 + F 100 -13.2 -4.57533 | opp_overlap 349794 349786 349784, overlap 349786 349784 ATAAAGACCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 429 350175 - 350165 - g 73 -6.8 -4.2687 | CTCAAAAAGCATAAA CAGC TCT GCTG ATGTGACATCTGATT TERM 430 350309 - 350281 - g 70 -5.9 -4.41633 | TAGGCTCAAAAATAA GGCATAGAATTCC AAA GGAAGTCGCTGCC GTGAGCACAACCTAA M5005_Spy_0343 350145 - 350324 + | hypothetical protein TERM 431 350363 - 350377 + F 100 -7.2 -5.86976 | opp_overlap 350363, overlap 350358 TTCTGCAATTTGAAA TACTGA ATT TCAGTA TTTTTTCTTTTGTAA M5005_Spy_0344 350427 - 351134 + | permease metG 351377 - 353374 + | methionyl-tRNA synthetase TERM 432 353397 - 353420 + F 89 -6.8 -5.64006 | opp_overlap 353397 CTATTATTCAAAAAA CCTAAGCA AGAACATG TGCTTAGG TTTTTTTGATTGCCT TERM 433 353420 - 353397 - f 84 -6.8 -5.1101 | opp_overlap 353397 CTATTATTCAAAAAA CCTAAGCA AGAACATG TGCTTAGG TTTTTTTGATTGCCT TERM 434 353628 - 353613 - f 72 -6.2 -4.37092 | opp_overlap 353613 ATGGTTTTTATAAAA GTTAAG CATA CTTAAC TTTAGCCAAACAAAA TERM 435 353663 - 353646 - f 73 -7 -4.07285 | overlap 353644 TAGCCAAACAAAAGA GGACAC TAGAGC GTGTCC CACAAGACAGTTGAG M5005_Spy_0346 353705 - 353872 + | hypothetical protein nrdF 353869 - 354882 + | ribonucleotide-diphosphate reductase subunit beta nrdI 354886 - 355374 + | ribonucleotide reductase stimulatory protein TERM 436 356737 - 356752 + GF 75 -4.7 -5.00616 | overlap 356724 CAGTAGGATTAGGCG CCATG AACCTA CATGG TTTTTTGGCAACCAA nrdE.1 355341 - 357521 + | ribonucleotide-diphosphate reductase subunit alpha TERM 437 357584 - 357611 + G 100 -10 -5.44119 | opp_overlap 357586 357589 CACTCGACCTTTCAA GACAAGCAAG CATCAGCT CTTGCTTGTC TTTTTTTGGCCTCAA TERM 438 357707 - 357672 - g 70 -8.5 -3.44051 | gap 1, opp_overlap 357667 357684, overlap 357684 TTTTGAGCATCAGAA CGTCAAAAAAAAGGAC ATGGA GTCCTTTT-TTTGGCG ATCGGTGTTGAGGCC TERM 439 357696 - 357684 - g 100 -4.8 -5.81032 | opp_overlap 357684 357667, overlap 357672 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTTGGCGATCG TERM 440 357684 - 357696 + G 87 -4.8 -5.42259 | opp_overlap 357672 357684, overlap 357667 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTTGGCGATCG M5005_Spy_0350 357500 - 357718 + | hypothetical protein TERM 441 357746 - 357760 + T 77 -3.5 -5.56568 | CTGCCCTTGAAATAC GCTTC TATGT GGAGC TTTTTTTGGTCCTGT spyA 358476 - 357724 - | C3 family ADP-ribosyltransferase TERM 442 357960 - 357982 + g 72 -9.2 -3.36273 | TGCTCATAAAACTGT GCTTGGTGTA GCG TGTACCAAGC TTGATCTTACAAAGG M5005_Spy_0352 358935 - 359471 + | hypothetical protein TERM 443 359463 - 359492 + F 73 -3.7 -5.03145 | opp_overlap 359490, overlap 359490 ACATACTTAAGCGGT TTGTTCTAAAAAA TATT TTTTATAGTACAA TTTTTTAGCAAATTG TERM 444 359681 - 359701 + G 100 -13.3 -5.2696 | CCCTTTAGTAGTCAG GCCACCTCT GAT AGGGGTGGC TTTTTTGGGTTTTAG M5005_Spy_0353 359613 - 359996 + | hypothetical protein TERM 445 360063 - 360025 - T 100 -15.5 -3.37344 | opp_overlap 360027 360036, overlap 360027 360036 TTCGCACGCAATCAA CAGCACAAAAAGCACCC CTGAC AGGTGCTTTTTGTGCTT TAGCCAACCTATAGC TERM 446 360061 - 360027 - T 100 -18.1 -3.25652 | opp_overlap 360027 360036, overlap 360025 360036 CGCACGCAATCAACA GCACAAAAAGCACCC CTGAC AGGTGCTTTTTGTGC TTTAGCCAACCTATA TERM 447 360027 - 360061 + T 100 -17.4 -3.54129 | opp_overlap 360027 360025 360036, overlap 360036 CGCACGCAATCAACA GCACAAAAAGCACC CCTGACA GGTGCTTTTTGTGC TTTAGCCAACCTATA TERM 448 360052 - 360036 - T 81 -5.8 -4.98436 | opp_overlap 360027 360036, overlap 360027 360025 TCAACAGCACAAAAA GCACCC CTGAC AGGTGC TTTTTGTGCTTTAGC TERM 449 360036 - 360052 + T 77 -5.1 -5.04325 | opp_overlap 360036 360027 360025, overlap 360027 TCAACAGCACAAAAA GCACC CCTGACA GGTGC TTTTTGTGCTTTAGC M5005_Spy_0354 360722 - 360090 - | hypothetical protein TERM 450 360834 - 360850 + H 81 -10.9 -2.67735 | overlap 360833 360829 AGTCCTAGATTTCTC TGAGTGG CTG CCACTCA CTTAATGTTTCACTA TERM 451 361191 - 361210 + H 72 -2.8 -5.28755 | overlap 361193 TTTAAAGAAATACGA CTGTATCT TGAT AGGTACTG TTTTTTGATGTCTTT M5005_Spy_0355 361401 - 361721 + | hypothetical protein TERM 452 361748 - 361769 + T 74 -3 -5.27335 | gap 1 ATCCAGATATATATA GTAGCAGAG TAATT CTC-GCTGC TTTTTATTTCAACGC speJ 362732 - 362034 - | exotoxin type J precursor TERM 453 362926 - 362941 + r 84 -6.8 -5.04325 | TTGTCTAGGTTCTAA GCACCT GTAA GGGTGC TTTTTGTGCTTTAGC M5005_Spy_0357 363594 - 362980 - | hypothetical protein M5005_Spy_0358 363955 - 364191 + | hypothetical protein fabG 364175 - 364882 + | 3-ketoacyl-(acyl-carrier-protein) reductase M5005_Spy_0360 364928 - 365917 + | NAD-dependent oxidoreductase TERM 454 365980 - 366003 + F 100 -12.4 -5.00884 | opp_overlap 365973, overlap 365981 TTGAAAGACGTGTTT TCACGAGGGG GAGC CCCCTCGTGC TTTTTTGGCAAAAAT TERM 455 365981 - 366002 + F 100 -15.9 -3.60048 | opp_overlap 365973, overlap 365980 TGAAAGACGTGTTTT CACGAGGGG GAGC CCCCTCGTG CTTTTTTGGCAAAAA M5005_Spy_0361 366250 - 367587 + | phosphoglycerate transporter protein TERM 456 367600 - 367641 + F 77 -9.1 -3.28712 | gap 1, opp_overlap 367597 367608, overlap 367608 TAGCTAGGCAAATGC CTAAGAAAGACA-GACTT ATTGCTG AAGTCCTGTCTTTTTTAG TTATCACAAGCCGCA TERM 457 367608 - 367633 + F 72 -2.7 -5.32944 | gap 1, opp_overlap 367597 367608, overlap 367600 CAAATGCCTAAGAAA GACA-GACTT ATTGCTG AAGTCCTGTC TTTTTTAGTTATCAC TERM 458 367852 - 367865 + G 81 -6.7 -4.79223 | opp_overlap 367851 AGTATCTGGACTAAC CATGC TTGA GCATG TTTTTCGTAGTGTAA TERM 459 368848 - 368832 - g 70 -2.9 -5.02476 | ACATTGGTGAAAAAA CAAAGGC TGG GCATCTG ACTTATATTGGAAAC gcaD 367760 - 369142 + | glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase M5005_Spy_0363 369173 - 369727 + | phosphohydrolase M5005_Spy_0364 369727 - 369978 + | hypothetical protein pfs 369998 - 370693 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase M5005_Spy_0366 370844 - 371185 + | hypothetical protein TERM 460 371225 - 371262 + T 100 -24.5 -5.40072 | opp_overlap 371225 AGCCCCTCAAAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTTTGAGGAGAC TERM 461 371262 - 371225 - T 100 -24.5 -5.40474 | opp_overlap 371225 AGCCCCTCAAAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTTTGAGGAGAC scaR 371933 - 371286 - | iron-dependent repressor TERM 462 371717 - 371691 - G 71 -3.7 -4.90266 | CTGATGAATCAAAAA TACCTCAATCA AGCGG TGTTTGCGGTA GAGGTTAGCAACAAG TERM 463 372430 - 372417 - g 83 -5.3 -5.25735 | opp_overlap 372429 TCAAAAAACGAAAAA CAAAG ATTA CTTTG CCGTGTCTGATGGCA mtsA 372091 - 373011 + | manganese-binding protein TERM 464 373020 - 373050 + F 83 -6.2 -5.05113 | AAAATAAGATAACAA TAAAGCACAGCGAT TTT AGTGTTGTGCTTTG TTTTATTTATGTAAA mtsB 373075 - 373800 + | manganese transport system ATP-binding protein mtsC 373801 - 374655 + | manganese transport system membrane protein TERM 465 374703 - 374714 + T 74 -2.2 -5.43414 | AATAGTAGCAAATAA CATC AAAG GGTG TTTTTTATATGTCAT M5005_Spy_0371 375609 - 374803 - | peptidyl-prolyl cis-trans isomerase ftsK 375826 - 378231 + | cell division protein TERM 466 378271 - 378229 - T 85 -12.2 -3.02698 | opp_overlap 378234, overlap 378234 GTATTGCAGACAAAC TAAAAGAACCTGACGTCTCA TGA TGAGATGTTAGGTTCTTTTT TTGTGATGTCAAGCC TERM 467 378266 - 378234 - T 100 -12.1 -4.65153 | opp_overlap 378234, overlap 378229 GCAGACAAACTAAAA GAACCTGACGTCTCA TGA TGAGATGTTAGGTTC TTTTTTTGTGATGTC TERM 468 378234 - 378266 + T 100 -16.5 -5.69473 | opp_overlap 378234 378229 GCAGACAAACTAAAA GAACCTGACGTCTCA TGA TGAGATGTTAGGTTC TTTTTTTGTGATGTC M5005_Spy_0373 378654 - 378301 - | integral membrane protein TERM 469 379153 - 379112 - g 71 -6.5 -4.30844 | overlap 379115 ATTTCATCACTAAAA CACCACCAGCTGCTGTTCT TTTG AAAAAAGCTGCAGGTGTTG AAAAAGGATCAGGTA rplK 378898 - 379323 + | 50S ribosomal protein L11 TERM 470 379465 - 379447 - g 71 -5.3 -4.5187 | GCTAAAAAAAGCAAA CAAATGC GTGCT GCACTTG AAAAAGTAGATAGCA rplA 379429 - 380118 + | 50S ribosomal protein L1 TERM 471 380142 - 380127 - f 89 -3.3 -5.80364 | ACTTTAAGAAAAAAA TTAGG GCATCG CCTAA TCATAGCAAAAAGAC TERM 472 380169 - 380193 + F 86 -5.8 -5.42265 | AGACAAATTTCTGAA GACAAATCTT CACTA GAGGTTTGTC TTTTTTATGGTTTAA M5005_Spy_0376 380469 - 381602 + | transposase M5005_Spy_0377 381767 - 381937 + | uridylate kinase pyrH 381912 - 382133 + | uridylate kinase M5005_Spy_0379 382121 - 382495 + | uridylate kinase frr 382524 - 383081 + | ribosome recycling factor M5005_Spy_0381 383190 - 384047 + | S1 RNA-binding domain-containing protein TERM 473 384071 - 384051 - f 70 -3.9 -4.98436 | opp_overlap 384053, overlap 384052 384053 TTAATAGGATAAAAA TGCTTTGCC ACT GGCAAAGTT TTTTGTTACAATGAA TERM 474 384070 - 384052 - f 71 -7.4 -3.57977 | opp_overlap 384053, overlap 384051 384053 TAATAGGATAAAAAT GCTTTGCC ACT GGCAAAGT TTTTTGTTACAATGA TERM 475 384069 - 384053 - f 81 -10.9 -2.73702 | opp_overlap 384053, overlap 384052 384051 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 476 384053 - 384069 + F 100 -10.9 -5.46657 | opp_overlap 384052 384051 384053 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 477 384449 - 384439 - g 81 -5.4 -5.0707 | AAAGACAAAAAGAAA TTGC AGA GCAA TCAAAAGCAAACTTG msrA.2 384120 - 384629 + | methionine sulfoxide reductase A M5005_Spy_0383 384626 - 384841 + | hypothetical protein TERM 478 384871 - 384857 - f 85 -6.4 -5.252 | opp_overlap 384857 384869 TACGTGGATAAAAAA GAGTCA TAT CGACTC TTTTGAAGGGTTATC TERM 479 385727 - 385717 - g 70 -3.2 -4.91109 | overlap 385725 385726 GCCCCAGCAGAAAAA GAAG AAA CCTC TGCGCCAGCAGCACA M5005_Spy_0384 384997 - 386166 + | surface antigen TERM 480 386202 - 386185 - f 93 -7 -5.52986 | opp_overlap 386185 ATGCTATTAAAAAAA CTCACG TTTAGG CGTGAG TTTTTTGACAATTCT TERM 481 386185 - 386202 + F 88 -7.7 -5.06103 | opp_overlap 386185 ATGCTATTAAAAAAA CTCACGT TTAG GCGTGAG TTTTTTGACAATTCT TERM 482 386982 - 386994 + G 74 -6.3 -4.42806 | opp_overlap 386978 386973 AAACCATTGAAGAGT TCTTC TCA GAAGA TTTCTTTAAGAGTAA TERM 483 388217 - 388203 - g 85 -2.8 -5.71712 | overlap 388208 TCGGACATAAAAAAA TCAAGG ATA CCTTTA TCGAAGAATTGCTCA M5005_Spy_0385 386441 - 388252 + | 67 kDa Myosin-crossreactive antigen TERM 484 388296 - 388273 - f 82 -9.7 -3.70149 | opp_overlap 388273 CTTAGAGTAGTTAAA GCTGATAAG TTTAGG CTTATCAGC TTTTTTGATGATTTA TERM 485 388273 - 388296 + F 100 -10.4 -5.243 | opp_overlap 388273 CTTAGAGTAGTTAAA GCTGATAAGT TTAG GCTTATCAGC TTTTTTGATGATTTA TERM 486 388630 - 388658 + G 71 -6.7 -4.12532 | GTGGGTCGTGGCATG GTGGTCAACACAT CAG ATGTGGTGACAGC TTTATCTATGGCAGA phoH 388411 - 389463 + | phoH protein M5005_Spy_0387 389509 - 390084 + | uracil DNA glycosylase superfamily protein M5005_Spy_0388 390192 - 390740 + | putative metalloprotease TERM 487 390899 - 390909 + G 73 -5.4 -4.56187 | TTTTTAGCATTTCAG CCAT CGA ATGG TTATTTTTACTTCTA TERM 488 390992 - 391002 + G 73 -5.4 -4.57755 | TAGTTGATTTGGCTA GTGA CTA TCAC TTTTCTATGCTAGCT TERM 489 391038 - 391023 - g 72 -4.7 -4.66609 | opp_overlap 391037 TATGCTAGCTAAAAA TGCCA AGGATA TGGCA GCAGGTGCTGTTTTG TERM 490 391037 - 391048 + G 70 -5.8 -4.40993 | opp_overlap 391023 ATGCCAAGGATATGG CAGC AGGT GCTG TTTTGATGATTTCTG dgk 390721 - 391128 + | diacylglycerol kinase era 391248 - 392144 + | GTP-binding protein Era TERM 491 392309 - 392294 - g 72 -4.6 -4.77165 | GTGGTGATAAGAAAA CCTGGA CTAT TCCTGG TGGCACTATGGAACT M5005_Spy_0391 392128 - 392640 + | phosphohydrolase TERM 492 392711 - 392726 + T 95 -9 -5.63103 | TGAAAGACGATATTC GAGAGC TTAT GCTCTC TTTTTTTGCTTCCAA TERM 493 392765 - 392785 + T 73 -4.1 -4.90525 | overlap 392767 ATTAAGTCTGAATAA TTTTGTTAA ATG TTAACAGGA TTTTCTTTCCAATTG M5005_Spy_0392 393199 - 392945 - | hypothetical protein M5005_Spy_0393 393597 - 393842 + | hypothetical protein M5005_Spy_0394 393857 - 394039 + | hypothetical protein M5005_Spy_0395 394409 - 394230 - | transposase M5005_Spy_0396 394497 - 394348 - | transposase M5005_Spy_0397 394916 - 394494 - | transposase TERM 494 394918 - 394971 + H 76 -4.3 -5.14985 | GTAAACTGAGTCATG GGAATAAATCTCTTTCTAGTA-AGT GTCGCA ACTCTACTATACAG-GATTTATTCC TTTTTGTGTGTTTAC M5005_Spy_0398 395189 - 395398 + | bacteriocin M5005_Spy_0399 395463 - 395663 + | hypothetical protein silD 395957 - 396151 + | hypothetical protein M5005_Spy_0401 396460 - 396344 - | putative cytoplasmic protein TERM 495 396453 - 396487 + g 95 -8.8 -5.46657 | opp_overlap 396453 396452 TCATCTTTGCCAAAG CTCGTCATTTTATATG ATT TATATAGAATTACGAG TTTTTTGTTAGACTA TERM 496 396665 - 396677 + G 77 -7.7 -4.20354 | CAGATTCAGTCCATT CGTCT GAT AGACG TTTTGGAGTTGGCTT TERM 497 397329 - 397313 - g 81 -5.8 -5.08824 | overlap 397327 GTTTTATGGAAAAAA GGCTCC GTAAA AGAGCC TACTGAAGCCGATCA M5005_Spy_0402 396644 - 397639 + | hypothetical protein TERM 498 397723 - 397705 - g 90 -13.2 -2.70932 | GTTTCTTCTGAAGTA GCTGTGAG CGC CTCACAGC CGGAAGAATTGCATC M5005_Spy_0403 397684 - 398130 + | hypothetical protein TERM 499 398461 - 398437 - T 100 -10.8 -5.06451 | opp_overlap 398435 GATTAGCTTAAAAAA GAACACTACC GAAAT GGTAGTGTCC ACTGATTTTAGGAGA M5005_Spy_0404 398747 - 398478 - | hypothetical protein M5005_Spy_0405 398948 - 399055 + | hypothetical protein M5005_Spy_0406 399511 - 399269 - | hypothetical protein mutR 399818 - 400684 + | transcriptional regulator TERM 500 401516 - 401500 - gf 81 -7.9 -4.30014 | opp_overlap 401499 TTTAGGAATTGAAAA GGGCGGT TCG ACCGTCC GTACTTACCGTAATG fpg 400856 - 401683 + | formamidopyrimidine-DNA glycosylase coaE 401593 - 402273 + | dephospho-CoA kinase M5005_Spy_0410 402463 - 403965 + | ATPase TERM 501 404114 - 404146 + G 70 -5.6 -4.37734 | CAAAATCTAAAAGTG GCTTGGCTTGGTAA CTTCT TTACTGGGGCAAGC TTTTCACTTGTTATG M5005_Spy_0411 404087 - 405280 + | multidrug resistance protein B rpmG 405277 - 405423 + | 50S ribosomal protein L33 secG 405469 - 405705 + | preprotein translocase subunit SecG TERM 502 405710 - 405736 + F 89 -6.6 -5.60993 | opp_overlap 405709 CAAGTAAATAAGGAG TGAGCTTGAC AGAGTTA GTCTAGCTCA TTTTTTTATCAGCGA TERM 503 405928 - 405914 - g 76 -7.2 -4.26076 | overlap 405917 CCAGCCTTATTAAAA CCATTT CCA AAATGG AAAGTCAGAGCCTGT TERM 504 406012 - 406000 - g 87 -3.4 -5.79595 | CGTGAAAAGAAAAAA GAAC CTACT GTTC AGGGTGTTTTTCGTG M5005_Spy_0414 405802 - 408132 + | exoribonuclease II smpB 408135 - 408602 + | SsrA-binding protein TERM 505 408657 - 408629 - g 71 -6.8 -4.0251 | opp_overlap 408629 408635, overlap 408632 ATTATGATAACTAAA GGACAAGTTCGT TTGTT ACGAACTTATTC TTATGATAGCAACTT TERM 506 408635 - 408651 + G 71 -6.6 -4.05004 | opp_overlap 408632 408629, overlap 408629 ATAACTAAAGGACAA GTTCGT TTGTT ACGAAC TTATTCTTATGATAG TERM 507 409174 - 409162 - g 74 -9.1 -3.55563 | opp_overlap 409162 ACCTGATTCTGGAAA GGTGG TAG CCACC TATGATATTAGTCCT M5005_Spy_0416 408617 - 409327 + | glutaminyl-peptide cyclotransferase TERM 508 409411 - 409391 - T 84 -4 -5.67063 | opp_overlap 409391 409408 409409 TTTAGCACAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG TERM 509 409391 - 409411 + T 79 -4 -5.44119 | opp_overlap 409391, overlap 409408 409409 TTTAGCACAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG pcp 410090 - 409443 - | pyrrolidone-carboxylate peptidase M5005_Spy_0418 411066 - 410140 - | permease M5005_Spy_0419 411749 - 411066 - | permease M5005_Spy_0420 412886 - 411960 - | glucosyltransferase TERM 510 413021 - 412996 - R 100 -14.9 -5.42198 | opp_overlap 412996 412999 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 511 412996 - 413021 + r 95 -14.9 -3.29038 | opp_overlap 412996, overlap 412999 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 512 412999 - 413018 + r 90 -10.8 -3.77553 | opp_overlap 412996, overlap 412996 TAAAAAATAAAACAA CAGAAGCT TTAA AGCTTCTG TTGTTAATAGTATTA gloA 413408 - 413031 - | lactoylglutathione lyase M5005_Spy_0422 414084 - 413419 - | NAD(P)H-dependent quinone reductase pepQ 415218 - 414133 - | Xaa-Pro dipeptidase TERM 513 415273 - 415258 - H 79 -4 -5.40474 | overlap 415268 415272 ATTTTTTCAAAAAAA GCTTAA AAAA TCAAGC TTCGAGTTAATTTTT TERM 514 415323 - 415268 - H 71 -3.1 -5.16472 | gap 2, overlap 415258 415272 415284 415317 AAAAAGCTTAAAAAA TCAAGC-TT-CGAGTTAATTTTTGAAA ACTT TTTCAAAAATTAACCTATAACACTTGA AAGTGGTTACAAATC ccpA 415392 - 416393 + | catabolite control protein A TERM 515 416478 - 416451 - f 84 -11.4 -3.01791 | opp_overlap 416457, overlap 416457 ACTGTTTCTTCAATA CTAAAATCAGCC TTAG GGCTGATTTTTG CATGTCTTAGTGAAA TERM 516 416457 - 416472 + F 93 -9 -4.74453 | opp_overlap 416457 416451 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA TERM 517 416472 - 416457 - f 89 -9 -4.4261 | opp_overlap 416457, overlap 416451 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA M5005_Spy_0425 416524 - 417522 + | glycosyltransferase M5005_Spy_0426 417524 - 418858 + | 1,2-diacylglycerol 3-glucosyltransferase TERM 518 419076 - 419103 + F 100 -10.6 -6.09196 | TAAGGTGGAACCACG CTGATTGCGTCC TTTG GGATGCGGTCAG TTTTTTTGTTTTGGA thrS 419280 - 421223 + | threonyl-tRNA synthetase TERM 519 421231 - 421260 + F 71 -6.5 -4.1673 | overlap 421237 AAGCTTAATCAATGG CAAAAAGAGGTCC TTAT GGGCTTCTTTTTC TTTCTTAAAAAATTA TERM 520 421237 - 421254 + F 84 -5.5 -5.47159 | overlap 421231 AATCAATGGCAAAAA GAGGTCC TTAT GGGCTTC TTTTTCTTTCTTAAA TERM 521 421280 - 421294 + F 79 -4.2 -5.36965 | opp_overlap 421277 421282, overlap 421282 421288 TTAAAAAATTAAGCA AACGGT TGC ACCGTC TTTTTTATGGTGTTA TERM 522 421292 - 421282 - f 71 -6.8 -4.1144 | opp_overlap 421280 421282 421288, overlap 421277 AAAAAATTAAGCAAA CGGT TGC ACCG TCTTTTTTATGGTGT TERM 523 421282 - 421292 + F 74 -6.8 -4.30057 | opp_overlap 421277 421282, overlap 421280 421288 AAAAAATTAAGCAAA CGGT TGC ACCG TCTTTTTTATGGTGT TERM 524 421409 - 421399 - g 78 -2.6 -5.42259 | CCACCTTCAAAAAAA TTTT TCC AAAA CCATTAAAGAGCCAG drrA 421364 - 422356 + | daunorubicin resistance ATP-binding protein M5005_Spy_0429 422358 - 423176 + | daunorubicin resistance transmembrane protein M5005_Spy_0430 423178 - 423963 + | ABC transporter permease protein TERM 525 424052 - 424028 - f 81 -10 -3.49135 | opp_overlap 424028, overlap 424024 TAGATAATGAAGGAA GGCAGCTGTT GTAAA AACGGCTGCC TTTTTTTGTGATGGT TERM 526 424028 - 424052 + F 100 -12.2 -5.67967 | opp_overlap 424024 424028 TAGATAATGAAGGAA GGCAGCTGTT GTAAA AACGGCTGCC TTTTTTTGTGATGGT M5005_Spy_0431 424164 - 424313 + | dihydroxyacetone kinase TERM 527 424333 - 424384 + F 70 -8.4 -3.17391 | gap 1, opp_overlap 424322 424315 424339, overlap 424333 424335 424337 424339 424349 TAAAGACAAGGTTTG TCAATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTA ATTCTTTATTCTATA TERM 528 424333 - 424385 + F 74 -6.8 -4.31697 | gap 2, opp_overlap 424322 424315 424339, overlap 424333 424335 424337 424339 424349 TAAAGACAAGGTTTG TCA-ATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTAA TTCTTTATTCTATAT TERM 529 424335 - 424382 + F 83 -11 -3.12788 | gap 1, opp_overlap 424315 424339, overlap 424333 424333 424337 424339 424349 AAGACAAGGTTTGTC AATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTC TAATTCTTTATTCTA TERM 530 424337 - 424380 + F 90 -13.6 -3.10303 | gap 1, opp_overlap 424315 424339, overlap 424335 424333 424333 424339 424349 GACAAGGTTTGTCAA TACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTG TCTAATTCTTTATTC TERM 531 424378 - 424339 - f 85 -11.8 -3.02461 | gap 1, opp_overlap 424339 424337 424335 424333 424333 424349, overlap 424315 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 532 424339 - 424378 + F 93 -14 -3.08961 | gap 1, opp_overlap 424315 424339, overlap 424337 424335 424333 424333 424349 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 533 424349 - 424368 + F 70 -2.2 -5.35459 | gap 1, opp_overlap 424339, overlap 424339 424337 424335 424333 424333 CAATACCATAAAAAA GTTAAG-TG TCA CAGCTTAGC TTTTTTATGGTGTCT TERM 534 425762 - 425746 - gf 71 -8.7 -3.09327 | opp_overlap 425735, overlap 425734 GGACGCTATGGAATA GCTGCTA TAG CAGCAGC TGGTGGCCAAGGGTT M5005_Spy_0432 424708 - 425856 + | acetyl-CoA acetyltransferase TERM 535 425871 - 425861 - gf 93 -5.4 -5.63517 | TGCCCAAATAAAAAA GCTA TCG TAGC CGATCAGATAAGCTT TERM 536 426371 - 426361 - gf 89 -6.8 -5.27477 | opp_overlap 426361 ATGGCAAGCAAAAAA GGTG AGT CACC TTTACCTTTTACCGA M5005_Spy_0433 425813 - 427060 + | long-chain-fatty-acid--CoA ligase TERM 537 427616 - 427645 + G 100 -13.7 -4.06419 | opp_overlap 427604 AGACGCCCAAGCTCT GGCCCTTTTTTTG AGGT CTAAAAAAGGGCC TTGTTTGTGGCGGCA M5005_Spy_0434 427116 - 428150 + | putative cytoplasmic protein vicR 428312 - 429022 + | two-component response regulator TERM 538 429306 - 429296 - g 87 -3.2 -5.7946 | overlap 429279 TGCCCAAGAAAAAAA TCGC TTG GCAA GTATTTTGGCTTATA TERM 539 430278 - 430310 + G 75 -10 -3.23274 | overlap 430283 430285 ATCTGGGCTAAGAGT GACTATGGTAAAGG ATCGA CCTTTACTATTGTC TTGCCTTATGAAAAA TERM 540 430337 - 430326 - g 72 -4.4 -4.72272 | TTGCCTTATGAAAAA GATG CAGC CATC TATGAAGAATGGGAG vicK 429015 - 430367 + | two-component sensor histidine kinase vicX 430371 - 431180 + | Zn-dependent hydrolase TERM 541 431242 - 431210 - f 73 -9.2 -2.87362 | opp_overlap 431210, overlap 431209 431212 AGAGAATATGCAAAG TAGCGCTGATTGGT GATAT ACCAGTCAGGGCTA TTTTTTGATGTCTTA TERM 542 431210 - 431242 + F 100 -12.1 -5.27399 | opp_overlap 431210 431209 431212 AGAGAATATGCAAAG TAGCGCTGATTGGTG ATA TACCAGTCAGGGCTA TTTTTTGATGTCTTA TERM 543 431425 - 431480 + F 70 -7.2 -3.86903 | gap 2, opp_overlap 431425, overlap 431424 TAAAAACAAAAATAG CTCTATACTATCTGTAGTGGGACTGT AGTGGG AAATTCCC-CT-CAGATAGTGTAGAG TCTTTTGATTGTATG TERM 544 431546 - 431573 + F 83 -7.1 -4.82667 | opp_overlap 431546 ATAAATCACGAAAAA TCCACTTAGAG TCGGTT TTCTAGGTGGA TTTTTGGTATACTAA TERM 545 431573 - 431546 - f 73 -4.2 -4.85267 | opp_overlap 431546 ATAAATCACGAAAAA TCCACTTAGA GTCGGTTT TCTAGGTGGA TTTTTGGTATACTAA rnc 431624 - 432316 + | ribonuclease III TERM 546 434029 - 434017 - g 100 -5.5 -5.78622 | TTATTTGAAAAAAAA TCGCC AAG GACGA GCAACTTTTTTACCT smc 432317 - 435856 + | chromosome partition protein TERM 547 435861 - 435879 + T 100 -9.6 -5.52909 | opp_overlap 435861 TGACCAATTAAAAAA CAGAAGGG AGT TCCTTCTG TTTTTTTGGATGTTC TERM 548 435879 - 435861 - T 95 -8.9 -5.30155 | opp_overlap 435861 TGACCAATTAAAAAA CAGAAGG GAGTT CCTTCTG TTTTTTTGGATGTTC TERM 549 436004 - 435979 - T 100 -12 -4.60949 | opp_overlap 435979 TAGAGTACAAAGAAA GCCTTGGAAA TAGCAG TTTCCAAGGC TTTTTAGCTGTCGAT TERM 550 435979 - 436004 + T 100 -12.7 -4.71061 | opp_overlap 435979 TAGAGTACAAAGAAA GCCTTGGAAAT AGCA GTTTCCAAGGC TTTTTAGCTGTCGAT M5005_Spy_0440 436960 - 436109 - | transcriptional regulator TERM 551 437030 - 436985 - H 71 -3.5 -5.06414 | overlap 436989 CTTTCCCAACAAAAA TCAATTCCGTTTTTTTTTATT GTAC AATAAATAAAAACTGAAAGGA AGTCCGCTTATGAAG TERM 552 437026 - 436989 - H 73 -7.3 -3.9407 | overlap 436985 CCCAACAAAAATCAA TTCCGTTTTTTTTTATT GTAC AATAAATAAAAACTGAA AGGAAGTCCGCTTAT TERM 553 437153 - 437133 - H 84 -11.3 -3.12668 | opp_overlap 437114 437133 TAGGTGTACACTTAA GTCTTTAGA GTA TCTAAAGAC TTATAGGTAATGGTT TERM 554 437133 - 437153 + H 89 -11.3 -3.3854 | opp_overlap 437133, overlap 437114 TAGGTGTACACTTAA GTCTTTAGA GTA TCTAAAGAC TTATAGGTAATGGTT aroE.2 437234 - 438106 + | shikimate 5-dehydrogenase M5005_Spy_0442 438205 - 438939 + | putative cytoplasmic protein M5005_Spy_0443 438941 - 439675 + | hypothetical protein M5005_Spy_0444 439668 - 440654 + | hypothetical protein metK1 440664 - 441863 + | S-adenosylmethionine synthetase M5005_Spy_0446 441847 - 442815 + | hypothetical protein M5005_Spy_0447 442870 - 443859 + | glycosyltransferase involved in cell wall biogenesis TERM 555 444189 - 444179 - f 86 -5.4 -5.61596 | ATGGTTAGAAAAAAA TCCT AGT AGGA CTGCAATCGAAGATG M5005_Spy_0448 444385 - 444528 + | hypothetical protein M5005_Spy_0449 444552 - 445709 + | UDP-glucose 6-dehydrogenase TERM 556 446121 - 446134 + G 70 -3.1 -4.9218 | ACTAATGTTATCTTG GCATT TATG AGTGC TTTTTCTAGTCCATC TERM 557 446194 - 446184 - g 74 -4 -5.07107 | GAAATTGTTAAAAAA GATA GTA TATC ACAACTTAATTCATT mefE 445794 - 447002 + | macrolide-efflux protein TERM 558 447052 - 447093 + T 100 -8.9 -6.02919 | opp_overlap 447051 447052 TTTTTCAAAGTAAAG GCACTAAGTTGATCTGA CTTACACA TCTTATCAACTTAGTGC TTTTTTTATTTCTAG TERM 559 447093 - 447052 - T 77 -9.6 -3.03151 | opp_overlap 447052, overlap 447051 TTTTTCAAAGTAAAG GCACTAAGTTGATCTGAC TTACAC ATCTTATCAACTTAGTGC TTTTTTTATTTCTAG M5005_Spy_0451 447314 - 447105 - | transcriptional regulator M5005_Spy_0452 448149 - 447304 - | chromosome segregation ATPase TERM 560 448007 - 448029 + g 76 -3.4 -5.31275 | opp_overlap 448006 448007, overlap 448009 CGTTCAGTTGAGAAT TCGGAATCTA AAA TAGTTTCCAA TTTTTTGTGGTAAGC TERM 561 448192 - 448218 + r 100 -11.7 -5.30199 | AAGACTGCTTTCTAA CTCCAGCTTAG TATTT CTAAGTTGGAG TTTTTGTTGATTTTT M5005_Spy_0453 448962 - 448234 - | chromosome segregation ATPase M5005_Spy_0454 449177 - 448953 - | hypothetical protein M5005_Spy_0455 450271 - 449177 - | hypothetical protein TERM 562 449694 - 449679 - G 72 -3.2 -5.07567 | TGATAGGTTAAAAAA CCATCT GGGC AGAGGG CTATCAGATTCAGTG M5005_Spy_0456 450317 - 450619 + | plasmid stabilization system protein antitoxin protein M5005_Spy_0457 450619 - 450924 + | plasmid stabilization system protein protein M5005_Spy_0458 450943 - 451215 + | putative cytoplasmic protein TERM 563 451272 - 451289 + F 93 -7.7 -5.60993 | opp_overlap 451272 AGAAATATACCGAAA GCACTTC AAAG GAGGTGC TTTTTTTGTACCCCA TERM 564 451367 - 451351 - g 79 -5.1 -5.10208 | TAATTGGAAGAAAAA GGGCT AGAGATA AGCCC CAAAACAGTTATGAA M5005_Spy_0459 451320 - 451772 + | portal protein M5005_Spy_0460 451838 - 452152 + | hypothetical protein TERM 565 452163 - 452185 + F 77 -3.3 -5.4387 | ATTGATAAAAGGCAA GGGCGTATC AATTC GGCACGTCC TTTTTTAGTTTATCT TERM 566 452495 - 452521 + F 100 -10.3 -4.98911 | TAGTTTATCGCTTGT TTTATCGCTTG AAGAA CGAGCGATAAA TTTATTTTTATGGTA M5005_Spy_0461 452569 - 452907 + | putative cytoplasmic protein TERM 567 453344 - 453355 + G 70 -3 -5.10064 | opp_overlap 453344 TTCATTGGAATATAA TGAT GAAC ATCA TTTTTATGTGTTAAC M5005_Spy_0462 452931 - 453755 + | asparagine synthetase A M5005_Spy_0463 453769 - 455016 + | putative cytoplasmic protein mccF 455244 - 455960 + | microcin C7 self-immunity protein M5005_Spy_0465 455973 - 456173 + | hypothetical protein TERM 568 457079 - 457069 - g 78 -4 -5.31158 | TAAAAAAATCAAAAA GTTT TTT AAAC ATGAATTATATTCGA M5005_Spy_0466 456293 - 457192 + | hypothetical protein TERM 569 457322 - 457354 + T 89 -8.7 -4.44187 | gap 1, opp_overlap 457322 GTCTCTACTAAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT TERM 570 457354 - 457322 - T 95 -8.7 -5.14563 | gap 1, opp_overlap 457322 GTCTCTACTAAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT M5005_Spy_0467 458358 - 457645 - | transposase TERM 571 458213 - 458228 + g 72 -3.3 -5.04868 | AGAATGACTTTGATA GACTT CACACC AAGTC TTTTGTTTGCTTTGG M5005_Spy_0468 458681 - 458406 - | transposase TERM 572 458806 - 458835 + G 81 -5.8 -5.03314 | AGTTCACTTCAAAAA CGGTCAGGTTAT CGAAAT ATAATCTGGCTG TTTTTTACGAATGGA M5005_Spy_0469 458701 - 458919 + | hypothetical protein TERM 573 459724 - 459698 - g 80 -11 -3.38281 | overlap 459693 459701 CTACGGAAAATGCAA GACCTGAAATCA AAG TGATTTCAGACC AAGTCATTGGCCACT TERM 574 459721 - 459701 - g 79 -11.3 -2.54586 | overlap 459698 459693 CGGAAAATGCAAGAC CTGAAATCA AAG TGATTTCAG ACCAAGTCATTGGCC M5005_Spy_0470 458986 - 459783 + | HAD superfamily hydrolase M5005_Spy_0471 459787 - 460611 + | HAD superfamily hydrolase TERM 575 460721 - 460699 - g 76 -7.1 -4.14627 | overlap 460700 460712 TTTTGACAGAAACAA CTCAGAAAG AGGAG CTTTCTGAA AAAGCCAATGAGCAA TERM 576 461269 - 461253 - g 79 -5.1 -5.17744 | overlap 461255 ACAGATCAAGAAAAA TACAAGC GTA GCTTGAA AAAAACGCGGACTGG TERM 577 461267 - 461255 - g 77 -7.7 -4.20491 | overlap 461253 AGATCAAGAAAAATA CAAGC GTA GCTTG AAAAAAACGCGGACT ftsY 460611 - 462161 + | cell division protein TERM 578 462171 - 462198 + T 100 -15 -4.85129 | opp_overlap 462171 TTATAACAGCAAAAA CCAGTCTCGTTT TATT GAACGAGACTGG TTTTTAGTATGTCAT TERM 579 462198 - 462171 - T 100 -14.3 -4.90906 | opp_overlap 462171 TTATAACAGCAAAAA CCAGTCTCGTT TTATTG AACGAGACTGG TTTTTAGTATGTCAT M5005_Spy_0473 463582 - 462215 - | multidrug resistance protein B TERM 580 463331 - 463321 - G 72 -4.6 -4.81249 | TGCCAAATGTAAAAA GACC TGT GGCC ATAAAAAAGAGGGGT TERM 581 463525 - 463545 + g 85 -8.3 -4.43397 | overlap 463526 AAAAACCAATGAGTG CTATGGCGA TAA TCGCCATAA TTGTTTGTTTTGAAA TERM 582 463526 - 463544 + g 83 -11.8 -3.24954 | overlap 463525 AAAACCAATGAGTGC TATGGCGA TAA TCGCCATA ATTGTTTGTTTTGAA TERM 583 464680 - 464665 - g 89 -5.4 -5.39721 | opp_overlap 464665 TGAGGAGATAAAAAA GCGGTA CAAC TACCAC CTTAATTCAAGCGAA licT 463910 - 464752 + | BigG family transcription antiterminator TERM 584 464839 - 464817 - f 83 -10.6 -3.31416 | opp_overlap 464818, overlap 464812 AAAACAAATATTCAA CGTGTGACAC ACT GTGTAACACG TCTACGCTTAGTACT TERM 585 465818 - 465796 - g 73 -5.5 -4.65032 | opp_overlap 465809 CAAAGCAGAAACAAA CACGTCAAG TTGCC CTTGCCGCG GGGATTTCAGCTTTG TERM 586 466364 - 466352 - g 86 -7.7 -5.00616 | TGTTGCCTTAAAAAA CACAC GTG GTGTG GAAGTCTTGATTCAT M5005_Spy_0475 464916 - 466616 + | PTS system, beta-glucoside-specific IIABC component TERM 587 467217 - 467207 - g 76 -2.4 -5.38839 | GACAGAAAAAGAAAA GCTG AGC CTGC AAGATTTATACCAAG bglA 466635 - 468059 + | 6-phospho-beta-glucosidase TERM 588 468143 - 468117 - T 83 -6.7 -4.89729 | opp_overlap 468117 GATAAAACTCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT TERM 589 468117 - 468143 + T 95 -8.9 -5.54885 | opp_overlap 468117 GATAAAACTCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT M5005_Spy_0477 468973 - 468158 - | hypothetical protein M5005_Spy_0478 469875 - 468973 - | hypothetical protein TERM 590 469842 - 469827 - G 71 -4 -5.00642 | overlap 469829 469834 TAATGGACATAAAAA TCGCAA ACCA TTGCAA GACACTGGGAGGAAG TERM 591 469935 - 469903 - H 71 -5.6 -4.50976 | gap 1, opp_overlap 469925, overlap 469905 469906 469908 TTCTAGATGATAAAA GAGGAGGCTGAAACA CGAA TGTT-CAGCCTCGAC TGATACGTTTTGTTA TERM 592 469932 - 469906 - H 79 -10.3 -2.91099 | gap 1, opp_overlap 469925, overlap 469905 469903 469908 TAGATGATAAAAGAG GAGGCTGAAACA CGAA TGTT-CAGCCTC GACTGATACGTTTTG M5005_Spy_0479 470009 - 470206 + | hypothetical protein TERM 593 470244 - 470260 + TF 71 -3 -5.05153 | AACAATGCCAAAGCG GAAGTG TTGTT TACTTC TTTCTTTTTTAAAAT M5005_Spy_0481 470432 - 470304 - | hypothetical protein M5005_Spy_0480 470412 - 472544 + | transcription accessory protein TERM 594 472641 - 472661 + GF 75 -6.9 -4.11394 | TGGCGGTCGCTTTTT TCCAAAAGA TGG TCATTTGGA TTTTAACCCTAGGAT TERM 595 472891 - 472862 - gf 76 -10.1 -2.84687 | opp_overlap 472871, overlap 472871 CTAATCATCATTATA GTTGCCAAACCTG TGGG CAGGTTTATCAAC GAAAAAGGCGTATCA M5005_Spy_0482 472486 - 472968 + | hypothetical protein TERM 596 472959 - 472974 + F 79 -5.4 -5.07652 | opp_overlap 472959 472960, overlap 472954 472960 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA TERM 597 472974 - 472959 - f 77 -3.2 -5.47821 | opp_overlap 472954 472959 472960, overlap 472960 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA M5005_Spy_0483 473032 - 473304 + | stress-responsive transcriptional regulator TERM 598 473389 - 473424 + F 86 -8.4 -4.7629 | overlap 473396 TTGATATGTAAGTAA GCGAAGGGTCTTATCA ACTA TGATGAGGCTTTTTGC TTTTTGACTTAGTAA TERM 599 473396 - 473417 + F 83 -5.9 -5.18355 | overlap 473389 GTAAGTAAGCGAAGG GTCTTATCA ACTA TGATGAGGC TTTTTGCTTTTTGAC ptsK 473609 - 474601 + | HPr kinase/phosphorylase lgt 474598 - 475377 + | prolipoprotein diacylglyceryl transferase M5005_Spy_0486 475399 - 475806 + | hypothetical protein TERM 600 475917 - 475907 - g 73 -5.4 -4.57341 | AATCGTGCTGAAAAA GCTT ATC AAGC CTACAAAGAAAGTCC M5005_Spy_0487 475799 - 476227 + | hypothetical protein TERM 601 476318 - 476333 + T 95 -3.3 -6.20267 | AACTGAAGAAGGGGG GATTG TGGCTT CAATC TTTTTTTGTTTTTGA TERM 602 476379 - 476360 - T 100 -7.2 -6.02914 | gap 1 TTGACACAAAAAAAA GAGTCACGT AAA ACG-GACTC TGGAAGTTACATCAG M5005_Spy_0488 476670 - 476386 - | hypothetical protein M5005_Spy_0489 476869 - 477237 + | U32 family peptidase M5005_Spy_0490 477209 - 477796 + | U32 family peptidase M5005_Spy_0491 477887 - 479173 + | U32 family peptidase TERM 603 479189 - 479241 + T 100 -7.3 -5.77853 | gap 2, opp_overlap 479191 479208, overlap 479191 TAACAAGAAATACTA GAGGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCCTG TTTTTTTTGAAAATT TERM 604 479239 - 479191 - T 77 -9.9 -3.02508 | gap 2, opp_overlap 479189 479191, overlap 479208 ACAAGAAATACTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTGAAAA TERM 605 479191 - 479239 + T 100 -9.9 -4.52949 | gap 2, opp_overlap 479191 479208, overlap 479189 ACAAGAAATACTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTGAAAA M5005_Spy_0492 479314 - 479186 - | hypothetical protein TERM 606 479346 - 479322 - H 89 -6.6 -5.64274 | opp_overlap 479322 TGAGTCATAAAAAAA GTGAAAAAAA GATGA TTTTTTCCAC TTTAATTTCGAATAG M5005_Spy_0493 479383 - 479595 + | putative cytoplasmic protein M5005_Spy_0494 479832 - 479692 - | hypothetical protein TERM 607 479895 - 479870 - R 100 -14.9 -4.16842 | opp_overlap 479873 GCTACTGTTAATAAA CCAGTCTTCAT GGTA ATGAAGACTGG TTAGAGATAATAAAA TERM 608 479873 - 479892 + r 72 -9.4 -2.72661 | opp_overlap 479870 ACTGTTAATAAACCA GTCTTCAT GGTA ATGAAGAC TGGTTAGAGATAATA lysS 481461 - 479968 - | lysyl-tRNA synthetase TERM 609 480378 - 480390 + g 77 -6.3 -4.62069 | TGATGATATGTCCGA CACTT ATG AAGTG TTTTTCGAGTGGGAC TERM 610 481111 - 481134 + g 79 -5.2 -5.07107 | GACTTCGCCTTCAAC GCCGATAAAG TCGC CTAAATCGGC TTTTTTGAAGATTTC TERM 611 482269 - 482283 + G 73 -7.1 -4.02334 | opp_overlap 482268 482269 GTCGTCAGCTAAAAC CAGGC ACTAA GCCTG TTTATGATGTGGCTA M5005_Spy_0496 481635 - 482537 + | HAD superfamily hydrolase M5005_Spy_0497 483268 - 482645 - | phosphoglycerate mutase M5005_Spy_0498 484088 - 483609 - | transcriptional regulator TERM 612 484146 - 484123 - R 100 -7.6 -5.88197 | opp_overlap 484123 CTAAACATAAAAAAA TGGTATAACA ACAT TATTATACCA TTTTTTTAATGTAAG TERM 613 484123 - 484146 + r 86 -5.4 -5.58454 | opp_overlap 484123 CTAAACATAAAAAAA TGGTATAACA ACAT TATTATACCA TTTTTTTAATGTAAG M5005_Spy_0499 484742 - 484179 - | thiamine transporter TERM 614 484770 - 484749 - R 90 -8.1 -5.36441 | opp_overlap 484747 TGGTGACATAAAAAA CTCCTTTTG TGCA CAAAAAGAG TATCGCTTTCCAATC TERM 615 484915 - 484935 + r 83 -8.3 -4.36127 | opp_overlap 484914 484915, overlap 484907 ATATGATGAGATAAT CTCCTTGTC AAG GATAAGGGG TTTTAAATTATTGAC TERM 616 485008 - 484989 - R 85 -4.3 -5.75599 | opp_overlap 484989 TAAACTATAAAAAAA GATTAGC CATGAT GCTAACC TCTTAATTGTTGGAG M5005_Spy_0500 485859 - 485011 - | N-acetylmuramoyl-L-alanine amidase TERM 617 486397 - 486407 + G 73 -5.4 -4.6265 | CCTTGGGTCTTTTGG CAAG TTA CTTG TTTTGTGCTTGTTCT M5005_Spy_0501 486184 - 486687 + | integral membrane protein M5005_Spy_0502 486671 - 487057 + | hypothetical protein TERM 618 487105 - 487064 - T 100 -20.7 -2.81815 | opp_overlap 487069 487074, overlap 487067 487074 TTTAATTAGTAACTA TAATATAAAATAGACTTGG CACG CCAAGTCTATTTTATATTA ACCAAGAAGTGCTTT TERM 619 487102 - 487067 - T 100 -18 -3.55145 | opp_overlap 487069 487074, overlap 487064 487074 AATTAGTAACTATAA TATAAAATAGACTTGG CACG CCAAGTCTATTTTATA TTAACCAAGAAGTGC TERM 620 487069 - 487100 + T 100 -16.2 -3.01791 | opp_overlap 487067 487064 487074, overlap 487074 TTAGTAACTATAATA TAAAATAGACTTGG CACG CCAAGTCTATTTTA TATTAACCAAGAAGT TERM 621 487074 - 487095 + T 100 -11.7 -4.66537 | opp_overlap 487067 487064 487074, overlap 487069 AACTATAATATAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA TERM 622 487095 - 487074 - T 100 -11.7 -4.76193 | opp_overlap 487074 487069, overlap 487067 487064 AACTATAATATAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA M5005_Spy_0503 487582 - 487103 - | glutathione peroxidase TERM 623 487461 - 487477 + g 73 -8 -3.79138 | TGCAAGGCCTGGTAT TGTGGG GTTAG CCCACA TTTGGTAGCTGTATT pepF 489374 - 487575 - | oligoendopeptidase F ppc 489518 - 492331 + | phosphoenolpyruvate carboxylase TERM 624 493212 - 493232 + G 80 -4.7 -5.25656 | overlap 493214 493216 CCTGTTTTTGGCTAT GTCGCTAAA CGT TTTAGTGCC TTTTTTAATCCTTTT ftsW 492501 - 493775 + | cell division protein TERM 625 493810 - 493776 - T 100 -19 -3.69338 | opp_overlap 493786, overlap 493786 AAGCAATTTCAATAA TATTCTAAAATCTCCT TTA AGGAGATTTTAGAATA TAGACAATCCCAGTT TERM 626 493786 - 493800 + T 85 -8.6 -4.16943 | opp_overlap 493776 493786 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAGAC TERM 627 493800 - 493786 - T 85 -8.6 -4.21314 | opp_overlap 493786, overlap 493776 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAGAC M5005_Spy_0507 493932 - 493792 - | putative cytoplasmic protein tuf 494129 - 495325 + | elongation factor Tu TERM 628 495381 - 495397 + F 100 -10.8 -4.87807 | opp_overlap 495381 CTTAAGTTTGAAGAA GCCCCC AATTC GGGGGC TTTTTGCTATCTTAA TERM 629 495397 - 495381 - f 90 -11.5 -3.65314 | opp_overlap 495381 CTTAAGTTTGAAGAA GCCCCCA ATT CGGGGGC TTTTTGCTATCTTAA tpiA 495566 - 496324 + | triosephosphate isomerase TERM 630 496319 - 496377 + T 91 -13 -3.25942 | gap 1, opp_overlap 496325 496338 496375, overlap 496325 496338 TTGCTTGATTTCCTT -AACTAAGTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGACTTAACTC TTACTATAAGAGAAT TERM 631 496325 - 496370 + T 100 -22.4 -3.21062 | opp_overlap 496325 496338, overlap 496319 496338 GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGAC TTAACTCTTACTATA TERM 632 496370 - 496325 - T 100 -22.4 -3.34013 | opp_overlap 496325 496319 496338, overlap 496338 GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGAC TTAACTCTTACTATA TERM 633 496338 - 496357 + T 84 -6.5 -5.10497 | opp_overlap 496338 496325, overlap 496325 496319 AAGTCATCTAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT TERM 634 496357 - 496338 - T 84 -6.5 -5.10497 | opp_overlap 496325 496319 496338, overlap 496325 AAGTCATCTAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT M5005_Spy_0510 497658 - 496423 - | factor essential for expression of methicillin resistance TERM 635 496621 - 496635 + g 70 -8.6 -3.41051 | CTTGTGAATTGCCTT GAGCAT AGC ATGCTC TTGTAATAGAGCTGG TERM 636 497223 - 497234 + g 73 -5.8 -4.58663 | opp_overlap 497211 AAACAGGTTCACCCT CAGG ATAG CCTG TTTTTAAACCGTCAT murM 498871 - 497645 - | UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase/UDP-N-acetylmuramoylpentapeptide-lysine N(6)-seryltransferase TERM 637 498035 - 498045 + g 79 -3.2 -5.50313 | TAAATCTTTTTGTAG CCGT GCA ATGG TTTTTTGATTTTCTG TERM 638 498112 - 498136 + g 95 -3 -6.09888 | gap 2, overlap 498112 498113 CTTGTTCTGCTAAGG C-CTTG-TCCAA CTG TTGGATCAAGAG TTTTTTTTGTTCAGG TERM 639 498245 - 498255 + g 79 -3.2 -5.52384 | AAGGATAATGCCTTT TCGA TTC TCGG TTTTTTTCATCAAGG TERM 640 498452 - 498463 + g 76 -2.2 -5.40072 | TGTTCTGCCAGACCA TTCG ACAC CGAG TTTTTTTAGAAAAGC M5005_Spy_0512 499680 - 498871 - | HAD superfamily hydrolase TERM 641 499218 - 499232 + g 83 -7.2 -4.70887 | opp_overlap 499215 499218 CAGGTTCATCAATCA TCATCA TTT TGATGA TTTCTTTATTGGTCA TERM 642 499865 - 499838 - R 100 -14.4 -4.90266 | opp_overlap 499840 499845 TGTAGTAACTAAAAA GATTGAAGAAAG TACT CTTTCTTCAATC TTAGAATGGAGACAA TERM 643 499840 - 499863 + r 84 -11.2 -3.05844 | opp_overlap 499838, overlap 499845 TAGTAACTAAAAAGA TTGAAGAAAG TACT CTTTCTTCAA TCTTAGAATGGAGAC M5005_Spy_0513 500064 - 499831 - | putative cytoplasmic protein TERM 644 500077 - 500051 - G 70 -3.6 -4.86385 | overlap 500059 500066 AGGCTCAAAAATAAA GCATAGAATTCC AAA GGAAGTCGCTGC CATAAGCATCACCTA M5005_Spy_0514 501437 - 500136 - | dGTP triphosphohydrolase TERM 645 500449 - 500427 - G 76 -9.2 -3.75015 | ATAATCTGGATCAAA GCCAACTGAT TCG ACCAATTGGC GCAAGCGTTCTAACT TERM 646 500920 - 500908 - G 77 -4.9 -4.91109 | TTGGCAGCAGAAAAA TAAGA ATC TCTTA AAAGGTAATCCATAC M5005_Spy_0515 501519 - 501905 + | putative cytoplasmic protein TERM 647 502064 - 502090 + F 84 -6 -5.27335 | opp_overlap 502051 502085 502087 AATCTTAAACAGCGA GACTTGTTTA AGAAAAA TAAACAGGTC TTTTTATTTGAACAA TERM 648 502123 - 502085 - f 83 -6.2 -5.05606 | opp_overlap 502064, overlap 502087 TTTAAGAAAAATAAA CAGGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACCAA GGAGGTACTAATTTG TERM 649 502121 - 502087 - f 100 -11 -4.13123 | opp_overlap 502064, overlap 502085 TAAGAAAAATAAACA GGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACC AAGGAGGTACTAATT TERM 650 503388 - 503401 + G 71 -6.7 -3.99678 | TGGCAGAACCTCGTG TGGCA GAAC TGCCA TTTGATTCTGACCGT pacL 502136 - 504817 + | calcium-transporting ATPase TERM 651 504853 - 504830 - T 100 -14 -4.19472 | opp_overlap 504830 TAATAGACGCTAAAA GGTTTGAGAC AATT GTCTCAAACC TTTTTTTATAATCGT TERM 652 504830 - 504853 + T 100 -14 -5.67967 | opp_overlap 504830 TAATAGACGCTAAAA GGTTTGAGAC AATT GTCTCAAACC TTTTTTTATAATCGT regR 505896 - 504901 - | LacI family transcription regulator TERM 653 505772 - 505783 + g 72 -3.6 -5.09521 | GTAGCTTTGATACTC TCGC TGAT GCGG TTTTTAGTTTCTTCA M5005_Spy_0518 507867 - 505960 - | oligohyaluronate lyase TERM 654 507751 - 507767 + g 70 -3 -5.14965 | AAAGGTATTGGTTAA GAGTAG GTCAG CTATTC TTTTTTGATCAGCAT TERM 655 507944 - 507893 - R 95 -8.9 -5.07652 | gap 1 CTTTCCAAAAGAAAA GAGACCTCATCATGTGCTTAGGAA CTATT TCCCTATGCTCATAAC-AGGTCTC TATGAACCATTAAGC agaD 508775 - 507954 - | PTS system, N-acetylgalactosamine-specific IID component TERM 656 508730 - 508720 - G 73 -6.8 -4.24342 | opp_overlap 508720 508718 508722 TTTTGTAGGAAGAAA GCTC TCA GAGC TGTTTTGAGGTAATC M5005_Spy_0520 509544 - 508762 - | PTS system, N-acetylgalactosamine-specific IIC component agaV 510051 - 509563 - | PTS system, N-acetylgalactosamine-specific IIB component TERM 657 509641 - 509631 - G 79 -6.8 -4.56597 | TTTTGGTGTTAAAAA CCAC GTG GTGG TCATGGGCTAAGCAA M5005_Spy_0522 511286 - 510087 - | unsaturated glucuronyl hydrolase TERM 658 510853 - 510869 + g 82 -10.9 -3.50393 | TGGACTAATTTGTCG GCTGCTT TCA AAGCAGC TTCTCTAGACTCAGG M5005_Spy_0523 511353 - 511883 + | hypothetical protein TERM 659 512747 - 512761 + G 82 -6.4 -4.87665 | overlap 512749 GGACAACAGAAGACT TAGCTG GTC CAGCTG TTTTTCTAGCTAGCG TERM 660 512749 - 512759 + G 71 -6.8 -4.06182 | overlap 512747 ACAACAGAAGACTTA GCTG GTC CAGC TGTTTTTCTAGCTAG idnO 512059 - 512853 + | gluconate 5-dehydrogenase TERM 661 512917 - 512904 - g 79 -6.7 -4.50193 | ATTAATTAATGAAAA TAGCC AAGC GGCTA AAAATGGTATCATTT M5005_Spy_0525 512878 - 513519 + | hypothetical protein M5005_Spy_0526 513548 - 514549 + | 2-dehydro-3-deoxygluconokinase kgdA 514554 - 515189 + | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 662 515829 - 515864 + G 73 -7 -4.20148 | opp_overlap 515863 CTCGAAGCGTCAGGA TGTTTTGTTGGCGTTG GAGA CAACGCAAATAAAAGA TTATTTTGAAATAAT TERM 663 515880 - 515863 - g 79 -5.7 -4.94962 | opp_overlap 515829 ACAACGCAAATAAAA GATTATT TTGA AATAATC CTAGCGCGTGAAGAT TERM 664 516006 - 515995 - g 75 -5.8 -4.7173 | overlap 515999 GAGGACAGCCAAAAA GGCA TTGC TGCC GCCAAAGCAGCCAAT M5005_Spy_0528 515485 - 516135 + | beta-phosphoglucomutase/glucose-1-phosphate phosphodismutase TERM 665 517094 - 517080 - g 70 -2.8 -5.10029 | overlap 517092 AGCAACCTCAAAAAA CACCTT ATA AACGTG GAAAAATTACACCTA M5005_Spy_0529 516776 - 517951 + | iron-sulfur cluster-binding protein TERM 666 518228 - 518210 - g 71 -6 -4.26079 | opp_overlap 518209 CTAAATGAGTTAAAA GGTAAGTA TGA TACTTTCC ATAATATGCAAGAAT TERM 667 518425 - 518406 - g 71 -7.2 -3.89524 | gap 1, overlap 518410 ATGCTATCTTAGAAA TCCATCCTG GTT CAGGA-GGA ACTGAAGCGCAAGAT prfB 518105 - 519118 + | peptide chain release factor 2 TERM 668 519509 - 519491 - g 80 -4.4 -5.21709 | opp_overlap 519490 519491 CGCCACATTAAAAAA CGCGTGCC AGA GGTACTCG ATTTAGTTGGCTTGA ftsE 519137 - 519829 + | cell division ATP-binding protein ftsX 519822 - 520751 + | cell division protein TERM 669 520975 - 520931 - T 100 -14.6 -4.90381 | opp_overlap 520932 520934 520942, overlap 520932 TTCAAGAGAAGAAAA GCACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTGT CATTCAAAATTTAGT TERM 670 520974 - 520932 - T 100 -18.1 -3.53144 | opp_overlap 520932 520934 520942, overlap 520931 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTG TCATTCAAAATTTAG TERM 671 520932 - 520974 + T 100 -19.5 -2.74514 | opp_overlap 520932 520931, overlap 520934 520942 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGGTG TCATTCAAAATTTAG TERM 672 520934 - 520972 + T 100 -16.3 -2.91467 | opp_overlap 520932 520931, overlap 520932 520942 AAGAGAAGAAAAGCA CCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGG TGTCATTCAAAATTT M5005_Spy_0533 521696 - 521061 - | hydroxyacylglutathione hydrolase M5005_Spy_0534 521927 - 522541 + | acetoin reductase M5005_Spy_0535 522545 - 522691 + | acetoin dehydrogenase TERM 673 522708 - 522730 + F 100 -12.8 -5.02476 | opp_overlap 522705 AATGATTAATACTGA CACTGTGGGT TTC ACTCACAGTG TTTTTTAAGAAGTAT TERM 674 523982 - 523968 - g 70 -2.7 -5.04868 | opp_overlap 523968, overlap 523963 CGAAATCAAACAAAA GCAGC GCTTT GCAGC TTATTTTGAGCAGCT TERM 675 524365 - 524350 - g 72 -4.7 -4.73614 | TACTATCAAAATAAA GAGCA CCAGCT TGCTC ATGATTGGTCTCGTA dinG 522841 - 525300 + | bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon TERM 676 525287 - 525327 + F 100 -10.8 -4.74801 | opp_overlap 525285, overlap 525288 TAGTAGAAACGGACT GTTTTCTGATATAATGGA AAGGA TCTATTATATCAGAAAAA TTTTTAATGGCGTTA TERM 677 525288 - 525326 + F 100 -14.3 -3.44158 | opp_overlap 525285, overlap 525287 AGTAGAAACGGACTG TTTTCTGATATAATGGA AAGGA TCTATTATATCAGAAAA ATTTTTAATGGCGTT aspC 525635 - 526828 + | aspartate aminotransferase asnC 526849 - 528195 + | asparaginyl-tRNA synthetase TERM 678 528233 - 528199 - f 91 -11.8 -3.67112 | opp_overlap 528199 528207, overlap 528207 ATTAGACCCTAATAA TACAAAAAGTTCAT GTCATCT ATGAACTTTTTGTA TTGGTAAGAAGTGAG TERM 679 528199 - 528233 + F 91 -12.5 -3.14931 | opp_overlap 528199 528207, overlap 528207 ATTAGACCCTAATAA TACAAAAAGTTCATG TCATC TATGAACTTTTTGTA TTGGTAAGAAGTGAG TERM 680 528225 - 528207 - f 71 -3.2 -5.2015 | opp_overlap 528207 528199, overlap 528199 CTAATAATACAAAAA GTTCAT GTCATCT ATGAAC TTTTTGTATTGGTAA TERM 681 528207 - 528225 + F 73 -3.9 -5.1244 | opp_overlap 528199 528207, overlap 528199 CTAATAATACAAAAA GTTCATG TCATC TATGAAC TTTTTGTATTGGTAA M5005_Spy_0539 528609 - 529499 + | hypothetical protein M5005_Spy_0540 529496 - 530473 + | transporter TERM 682 530994 - 530962 - g 84 -7.9 -4.68424 | CAACTCATGCAAAAA TTTATGCTAGATG CCAAAAC CATCGAGCATAAA AGCGGTGCAGTTACT M5005_Spy_0541 530470 - 531381 + | putative cytoplasmic protein TERM 683 531392 - 531415 + F 100 -10.4 -5.71712 | overlap 531413 TATAGAACATTTTTA TCGTATGAGC CTTT GTTCATACGA TTTTTTTGTCTAAAA pepD 531514 - 532911 + | dipeptidase TERM 684 532924 - 532943 + F 100 -10 -5.05782 | opp_overlap 532924 TAATAGTGAAGCTAA GGCTGAGC AACT GCTTAGCC TTTTTTACGATAACT M5005_Spy_0543 533063 - 534610 + | high-affinity zinc uptake system protein znuA precursor TERM 685 534625 - 534650 + F 100 -9.1 -5.38054 | opp_overlap 534625 ATCTTAACTCACTAA GCAAATCTTCT TTTA AGGAGGTTTGC TTTTTCTTTGTGGAG M5005_Spy_0544 534758 - 535480 + | GntR family transcriptional regulator TERM 686 535607 - 535629 + G 79 -4.8 -5.00884 | opp_overlap 535611, overlap 535627 535628 ATGACGTTTTTTGAA GAAACAAGAG ATT CTCTGGATTC TTTTTTAAAGAGAGT agaS 535499 - 536698 + | galactosamine-6-phosphate deaminase (isomerizing) TERM 687 536758 - 536776 + T 95 -8.8 -5.53436 | opp_overlap 536758 AGGTCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT TERM 688 536776 - 536758 - T 100 -11 -5.46706 | opp_overlap 536758 AGGTCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT rpmE2 537055 - 536795 - | 50S ribosomal protein L31 type B M5005_Spy_0547 538111 - 537170 - | phosphoesterase, DHH family protein TERM 689 537735 - 537747 + g 74 -9.1 -3.49653 | GCAATGATTTCACTT GCGCT AGA AGCGC TTGTGTCCACATAAT M5005_Spy_0548 538505 - 538954 + | flavodoxin TERM 690 538971 - 538990 + F 83 -6.4 -4.92239 | ACTATTTAGTAAAAA TGTCAGGG ACTT CCTTGGCA TTTTTAGATTTTTAA M5005_Spy_0549 539130 - 539414 + | hypothetical protein M5005_Spy_0550 539407 - 540669 + | chloride channel protein TERM 691 540727 - 540703 - f 93 -9.4 -4.30719 | overlap 540705 TTTTGTTAGAATAAA TCTCGTGTGT AATGG ACACACGAAA ATTACGGCTAATCCG TERM 692 540725 - 540705 - f 75 -9.8 -2.50545 | overlap 540703 TTGTTAGAATAAATC TCGTGTGT AATGG ACACACGA AAATTACGGCTAATC rplS 540784 - 541131 + | 50S ribosomal protein L19 TERM 693 541187 - 541159 - f 100 -14.9 -3.71686 | opp_overlap 541159 541165, overlap 541165 CGTAACGTAATAGAA TAAAAAGACTAGA GTC TCTAGTCTTTTTA TGTCGTCGTGACAAT TERM 694 541159 - 541187 + F 95 -14.9 -2.82635 | opp_overlap 541159 541165, overlap 541165 CGTAACGTAATAGAA TAAAAAGACTAGA GTC TCTAGTCTTTTTA TGTCGTCGTGACAAT TERM 695 541165 - 541181 + F 100 -9.5 -5.01497 | opp_overlap 541159 541165, overlap 541159 GTAATAGAATAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 696 541181 - 541165 - f 100 -9.5 -5.29716 | opp_overlap 541165 541159, overlap 541159 GTAATAGAATAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 697 541461 - 541489 + F 83 -7.6 -4.70613 | opp_overlap 541467, overlap 541467 GTCATTATTGTCACT GAAAAAGCCTTT ACATC AAAGGCTTTTTG TTTTATTCCGGTTTT TERM 698 541483 - 541467 - f 83 -7.3 -4.66163 | opp_overlap 541467 541461 ATTGTCACTGAAAAA GCCTTTA CAT CAAAGGC TTTTTGTTTTATTCC TERM 699 541467 - 541483 + F 89 -6.6 -5.62288 | opp_overlap 541467, overlap 541461 ATTGTCACTGAAAAA GCCTTT ACATC AAAGGC TTTTTGTTTTATTCC M5005_Spy_0552 542134 - 542703 + | DNA gyrase related protein TERM 700 543651 - 543641 - g 82 -4 -5.42605 | CTAAGAAAAATAAAA TTCT TAA AGAA AATGAGGACAATTTG gyrB 542704 - 544656 + | DNA gyrase subunit B TERM 701 544725 - 544713 - f 80 -6.3 -4.77157 | overlap 544703 CGAATTGACTAAAAA TCATG ATG CATGA TGCCAACAGCTTTGT TERM 702 544779 - 544811 + F 79 -10.1 -3.33171 | opp_overlap 544781 GGGACAGCGTTAATG CATAGGTATTGAG ACCGCCC CTTAATACCTATG TTAGTCCTTATTAAG M5005_Spy_0554 545024 - 546748 + | septation ring formation regulator EzrA TERM 703 546758 - 546776 + T 95 -8.9 -5.17507 | opp_overlap 546758 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 704 546776 - 546758 - T 77 -8.9 -3.63627 | opp_overlap 546758 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 705 546901 - 546914 + T 79 -5.3 -5.03747 | opp_overlap 546896, overlap 546895 TTTCAAAAATCTTTT CCAAA AGGA TTTGG TTTTTTCAGGAGTTT M5005_Spy_0555 547338 - 546880 - | putative cytoplasmic protein eno 547565 - 548872 + | phosphopyruvate hydratase TERM 706 549005 - 549035 + T 93 -14.2 -2.95896 | opp_overlap 549011, overlap 549011 TTAAAGATTAAAGAA TAGAAAGCTTGGGA AAA TCCCAAGCTTTTTG CTTTCTAAATAGTAA TERM 707 549011 - 549029 + T 100 -13.2 -5.04601 | opp_overlap 549011, overlap 549005 ATTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA TERM 708 549029 - 549011 - T 100 -13.2 -4.41237 | opp_overlap 549011 549005 ATTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA TERM 709 549164 - 549174 + T 74 -6.8 -4.40572 | opp_overlap 549162 549164 TATATTTTAAATACA GGAC TAA GTCC TTTTATACCAATTGT M5005_Spy_0557 549988 - 549398 - | transposase TERM 710 549437 - 549477 + g 93 -9.8 -5.05505 | AAGGCAATGTCTAGA GGCAATCGTATGTGGCTT GGTTG AAGCTGTTTGCGATTGCC TTTTTCGTTTCTCAT TERM 711 549853 - 549873 + g 71 -6.1 -4.26076 | opp_overlap 549853 TGGCATAGTAGCGAA CCTCTTCTA TCA TCGGAGAGG TTTTCGTAACAGTAA TERM 712 550000 - 549981 - G 77 -10.8 -2.81133 | GATTGACGGATGATA GCTGACAA TGCT TTGTCAGC TAGCTCCAGTACAAA M5005_Spy_0558 550288 - 550037 - | transposase M5005_Spy_0559 551306 - 550650 - | transcriptional regulator M5005_Spy_0560 552190 - 551303 - | transcriptional regulator TERM 713 555329 - 555305 - g 76 -2.2 -5.4182 | overlap 555306 AAGGATAAAGAAAAA CTTCTTGC AGAATTGAA GCAAAAAG CAGATGATACTGAAA TERM 714 557338 - 557324 - g 83 -7.2 -4.77438 | overlap 557334 ACTCATGACCAAAAA GTTGAT CAA ATCAAC AAAGTTGAACAAGCT TERM 715 557597 - 557577 - g 72 -4.6 -4.74787 | overlap 557579 ATAAAGACAAACAAA CAGCAGCG GTTGA CGCAGCTA AGAATACAGCAATTG epf 552662 - 558841 + | putative extracellular matrix binding protein TERM 716 558909 - 558884 - f 100 -14.9 -3.59738 | opp_overlap 558884 TACTATATTTTCAAA CCAAGGTGATT TTGA AATCACCTTGG TTTTTTGGATCGTAA TERM 717 558884 - 558909 + F 100 -14.9 -5.1101 | opp_overlap 558884 TACTATATTTTCAAA CCAAGGTGATT TTGA AATCACCTTGG TTTTTTGGATCGTAA sagA 559706 - 559867 + | streptolysin S precursor TERM 718 560013 - 560059 + F 83 -9.7 -3.74693 | gap 1, opp_overlap 560022, overlap 560014 560016 560018 560022 TCTTGATGCTAACGT C-TCAGGTAATTAGCAGGTACT AGAT AGTACCTGCTAATTACTATATG TTTAGTAAAATGAGA TERM 719 560014 - 560057 + F 95 -13.4 -3.4582 | opp_overlap 560022, overlap 560013 560016 560018 560022 CTTGATGCTAACGTC TCAGGTAATTAGCAGGTACT AGAT AGTACCTGCTAATTACTATA TGTTTAGTAAAATGA TERM 720 560016 - 560055 + F 100 -16 -3.29972 | opp_overlap 560022, overlap 560014 560013 560018 560022 TGATGCTAACGTCTC AGGTAATTAGCAGGTACT AGAT AGTACCTGCTAATTACTA TATGTTTAGTAAAAT TERM 721 560018 - 560053 + F 100 -20.8 -3.21269 | opp_overlap 560022, overlap 560016 560014 560013 560022 ATGCTAACGTCTCAG GTAATTAGCAGGTACT AGAT AGTACCTGCTAATTAC TATATGTTTAGTAAA TERM 722 560022 - 560049 + F 100 -15.8 -3.40082 | opp_overlap 560022, overlap 560018 560016 560014 560013 TAACGTCTCAGGTAA TTAGCAGGTACT AGAT AGTACCTGCTAA TTACTATATGTTTAG TERM 723 560049 - 560022 - f 100 -15.8 -3.06133 | opp_overlap 560018 560016 560014 560013 560022 TAACGTCTCAGGTAA TTAGCAGGTACT AGAT AGTACCTGCTAA TTACTATATGTTTAG sagB 560089 - 561039 + | streptolysin S biosynthesis protein sagC 561036 - 562094 + | streptolysin S biosynthesis protein TERM 724 563100 - 563112 + GF 70 -4.1 -4.81851 | opp_overlap 563078 TGCAAATATTGAATG CGAAG AAC CTTTG TTTTTAGATTTAGAT TERM 725 563359 - 563374 + GF 71 -7.6 -3.67558 | TGGTACGTCACGCGA GTTCTG ATGC CAGAAC TTCTTGAAATGTGTA sagD 562114 - 563472 + | streptolysin S biosynthesis protein TERM 726 563952 - 563963 + GF 73 -2.2 -5.31877 | TAAATCACTTATTGA TGGG GAAA TCCA TTTTTTATGCTAAGT sagE 563447 - 564118 + | streptolysin S putative self-immunity protein sagF 564115 - 564798 + | streptolysin S biosynthesis protein TERM 727 565184 - 565160 - g 86 -7.3 -5.0538 | opp_overlap 565164 GCTCAGCTTAAAAAA CAAGTTCTAAA AAG TTTAGAATTTG TGGGGCTACACTCCC sagG 564821 - 565744 + | streptolysin S export ATP-binding protein sagH 565753 - 566880 + | streptolysin S export transmembrane protein sagI 566877 - 567995 + | streptolysin S export transmembrane protein TERM 728 568041 - 568079 + F 100 -9.1 -5.00412 | opp_overlap 568034, overlap 568029 TTAGCTAACTACCAG GTAGCCCTTTTATTG GCTTATATG CAATAAAAGGGTTGC TTTTTGCTTATATTT TERM 729 568286 - 568276 - f 79 -4 -5.52986 | opp_overlap 568276 ATGTTATTAAAAAAA GTTT TGA AAAC GTATTTATTTTATGG TERM 730 569789 - 569826 + G 77 -9.9 -3.44848 | overlap 569786 AGGGAAAGATCGTAT CGCGCCAGCCAATATTA TTGA TAATGATGGCTTGCGTG TGTTTGATCCAGAAG TERM 731 570209 - 570188 - g 74 -3.7 -5.05153 | ACCTGAAAAAACAAA CTTGCAAAA AGAC CTTAGCAAG TTAAGCATTGCTTCT TERM 732 570779 - 570799 + G 70 -9.7 -2.66316 | opp_overlap 570784, overlap 570776 570784 CACTTTTAAATCTGA GCAAAGACG TCA CGTCTTGGC TAATATGCTAGCACA M5005_Spy_0571 568566 - 571298 + | endonuclease/exonuclease/phosphatase family protein M5005_Spy_0572 571576 - 572076 + | hypothetical protein TERM 733 572096 - 572117 + F 82 -4.3 -5.57729 | opp_overlap 572096, overlap 572101 GCATCATACTCAAAA GAGTTGGGT CAAT ACCCTTCTC TTTTTTATGTTGTTT ligA 572270 - 574228 + | NAD-dependent DNA ligase LigA M5005_Spy_0574 574242 - 575264 + | putative lipid kinase TERM 734 575383 - 575405 + F 88 -7.7 -5.20216 | TCAATTTATTCATAT GAGGGGCCT ATTTG AGGTCTCTC TTTTTTGATCATATG TERM 735 575442 - 575457 + F 74 -5.4 -4.67556 | AATGCCATGTTTTAG GGGTGT TATT ATACCC TTTTTGGAATCTTGT atpE 575657 - 575854 + | F0F1 ATP synthase subunit C TERM 736 576225 - 576235 + G 73 -6.8 -4.21098 | opp_overlap 576225, overlap 576218 TGGACCTCGCCAACA GCCA ATC TGGC TTTTGACCTTGCTCT atpB 575889 - 576605 + | F0F1 ATP synthase subunit A atpF 576623 - 577117 + | F0F1 ATP synthase subunit B atpH 577117 - 577653 + | F0F1 ATP synthase subunit delta atpA 577669 - 579177 + | F0F1 ATP synthase subunit alpha TERM 737 579664 - 579688 + G 72 -4.4 -4.77759 | gap 1, opp_overlap 579664 579665 CAAATCATTTCACAA TC-CGTTGACA TGTT TGTCAATGAGA TTTTTGATGAGTTAT atpG 579193 - 580068 + | F0F1 ATP synthase subunit gamma TERM 738 580091 - 580073 - f 76 -2.5 -5.58179 | gap 1, opp_overlap 580075, overlap 580076 CACTAGAATAAAAAA TAA-CGCT GACT AGCGATTA GGTTATTGTCAGCAT TERM 739 580087 - 580076 - f 81 -5.8 -4.84921 | opp_overlap 580075, overlap 580073 TAGAATAAAAAATAA CGCT GACT AGCG ATTAGGTTATTGTCA atpD 580230 - 581636 + | F0F1 ATP synthase subunit beta atpC 581649 - 582065 + | F0F1 ATP synthase subunit epsilon M5005_Spy_0583 582331 - 582588 + | hypothetical protein murA 582815 - 583924 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase epuA 583928 - 584116 + | epuA protein TERM 740 584113 - 584127 + F 100 -10 -4.8667 | opp_overlap 584113, overlap 584108 TAAATTTACTGGAAA GTAGGC CTT GCCTAC TTTTTATAGCATCTG TERM 741 584127 - 584113 - f 82 -10 -3.62864 | opp_overlap 584108 584113 TAAATTTACTGGAAA GTAGGC CTT GCCTAC TTTTTATAGCATCTG endA 584152 - 584691 + | DNA-entry nuclease TERM 742 584904 - 584944 + F 88 -7.5 -5.14563 | AAAACGGATGGTACC GCGTGTCAACGCTCCGCTT ATC AAGTGGAGGAGTGGCATGC TTTTTTCATCGCCAA pheS 584974 - 586017 + | phenylalanyl-tRNA synthetase subunit alpha TERM 743 586180 - 586207 + F 76 -9.8 -2.91144 | opp_overlap 586179 586173 586170 586182, overlap 586179 GGAAATGACTCAAAT CACGGCTTGAGA GCTT TCTCTAGCCGAG TGATTTGGGCACTAA TERM 744 586205 - 586182 - f 83 -11 -2.96232 | opp_overlap 586180 586179, overlap 586179 586173 586170 AAATGACTCAAATCA CGGCTTGAGA GCTT TCTCTAGCCG AGTGATTTGGGCACT TERM 745 587593 - 587621 + G 75 -10.4 -3.14463 | gap 1, overlap 587596 TAGCTGTTCCTCGGC GTC-GTTGGGATG TTAG CATCCCAGCTGAC TTGGTGGAAGAAATT TERM 746 587596 - 587617 + G 76 -10.9 -2.56596 | overlap 587593 CTGTTCCTCGGCGTC GTTGGGATG TTAG CATCCCAGC TGACTTGGTGGAAGA pheT 586212 - 588632 + | phenylalanyl-tRNA synthetase subunit beta TERM 747 588659 - 588641 - f 91 -4.4 -5.80364 | opp_overlap 588641 588643 588645, overlap 588643 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 748 588641 - 588659 + F 95 -6.6 -5.84432 | opp_overlap 588641 588643, overlap 588643 588645 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 749 588699 - 588688 - f 79 -4.4 -5.27399 | TAATAGAGGAAAAAA GAAC TCCA GTTC AAATGATTGGAGAAA TERM 750 588776 - 588758 - g 75 -2.5 -5.33405 | gap 1 TGTATCAAACAAAAA TAACAGGC AACC GCCT-TTA CCACACGGTTTCGAA TERM 751 588919 - 588937 + G 85 -8.9 -4.19624 | TACCATCGTCAATTT CAGCAAG ACACA CTTGCTG TTTCTGTTGAGGCTA M5005_Spy_0589 588742 - 589119 + | salt-stress induced protein M5005_Spy_0590 589112 - 589498 + | hypothetical protein M5005_Spy_0591 589571 - 590647 + | ABC transporter permease protein TERM 752 591247 - 591232 - g 72 -3.2 -5.01858 | overlap 591234 TAAAGAAAAAAACAA GGCCAT TATT ATGGTC ACTCATGATGATCGG M5005_Spy_0592 590657 - 591325 + | ABC transporter ATP-binding protein TERM 753 591344 - 591401 + T 84 -11.9 -2.54919 | gap 1, opp_overlap 591360, overlap 591360 ACTGGTAAGAGTTTA TGATA-TTAGAAAAAAACCAAACAAG CACAGCA CTTGTTTGGTTTTTTTCTAAGTGTGA CTATTATCAATACGT TERM 754 591360 - 591384 + T 95 -8.7 -5.65177 | opp_overlap 591360, overlap 591344 GATATTAGAAAAAAA CCAAACAAG CACAGCA CTTGTTTGG TTTTTTTCTAAGTGT TERM 755 591384 - 591360 - T 100 -10.1 -5.69473 | opp_overlap 591360 591344 GATATTAGAAAAAAA CCAAACAAGCA CAG CACTTGTTTGG TTTTTTTCTAAGTGT M5005_Spy_0593 592344 - 591427 - | neutral zinc metallopeptidase family protein TERM 756 592936 - 592924 - gH 70 -2.7 -5.06451 | GACCATCCTAAAAAA CAAGA AGA TCTTA TTAAAATTATTGAGC TERM 757 593047 - 593075 + GH 80 -6.1 -4.7657 | opp_overlap 593044 593047 593050 CTTTTAAATAACCAA CTATCAAAAACAG TTG TTGTTATTGATGG TTTTTCACGTTTTTC rexB 592495 - 595710 + | ATP-dependent nuclease subunit B TERM 758 597173 - 597183 + GF 81 -6.8 -4.77157 | AGAGGTGTTAAATGT CAGC AAT GCTG TTTTTAGTCACTTAA rexA 595671 - 599339 + | ATP-dependent nuclease subunit A M5005_Spy_0596 599479 - 600291 + | arginine-binding protein rpsU 600432 - 600608 + | 30S ribosomal protein S21 TERM 759 600650 - 600620 - T 89 -7 -5.31456 | opp_overlap 600625, overlap 600625 CTAATGGATAAAAAA TAAAACAGTTCTCA CAA TTAGAACTGTTTTT ATTTTTTATCCAGAA TERM 760 600625 - 600645 + T 100 -6.9 -5.8096 | opp_overlap 600620 600625 GGATAAAAAATAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 761 600645 - 600625 - T 93 -6.9 -5.49579 | opp_overlap 600625, overlap 600620 GGATAAAAAATAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 762 600698 - 600719 + T 73 -7.4 -3.86897 | opp_overlap 600698 TTGATATCAAAAAAA GTAGTTAG ACATGC CTAACTAC TTTATCAAAAATCGC TERM 763 600719 - 600698 - T 93 -8.1 -5.58454 | opp_overlap 600698 TTGATATCAAAAAAA GTAGTTAGA CATG CCTAACTAC TTTATCAAAAATCGC mscL 601098 - 600736 - | large-conductance mechanosensitive channel TERM 764 600788 - 600801 + g 80 -4.5 -5.18355 | AATTCTTCTTGAGTA GGAGC TGCA GCTTC TTTTTCCTTTTTAGG dnaG 601229 - 603043 + | DNA primase rpoD 603052 - 604161 + | RNA polymerase sigma factor RpoD TERM 765 604154 - 604188 + F 89 -10.8 -3.53031 | opp_overlap 604155 604158 604164, overlap 604155 604157 604164 TAAGAGACTTTATAG AGGACTAAAATCGTCC AGT GGACGATTTTAGGTCG TTCCTTTGAAATAAG TERM 766 604187 - 604155 - f 84 -12.1 -2.91507 | opp_overlap 604155 604154 604157 604164, overlap 604158 604164 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 767 604155 - 604187 + F 93 -14.3 -2.71497 | opp_overlap 604155 604158 604164, overlap 604154 604157 604164 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 768 604157 - 604185 + F 87 -13.3 -2.89837 | opp_overlap 604155 604158 604164, overlap 604155 604154 604164 GAGACTTTATAGAGG ACTAAAATCGTCC AGT GGACGATTTTAGG TCGTTCCTTTGAAAT TERM 769 604184 - 604158 - f 100 -16.8 -2.69977 | opp_overlap 604157 604155 604154 604164, overlap 604155 604164 AGACTTTATAGAGGA CTAAAATCGTCC AGT GGACGATTTTAG GTCGTTCCTTTGAAA TERM 770 604178 - 604164 - f 100 -10 -4.34345 | opp_overlap 604164 604157 604155 604154, overlap 604158 604155 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 771 604164 - 604178 + F 93 -10 -4.24294 | opp_overlap 604158 604155 604164, overlap 604157 604155 604154 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 772 604436 - 604461 + G 72 -8.5 -3.57883 | gap 1, opp_overlap 604444 CAAGATCAGGTGATA GCTATCAAGAAT AGA ATTCTTGA-AGC TTTAGAAACTGTTAT M5005_Spy_0601 604397 - 604735 + | putative cytoplasmic protein TERM 773 605365 - 605343 - g 73 -10 -2.91695 | overlap 605340 GGTATTTGGAAATTA TGGTAAAAAC TTT GTCTTTACCA TGGAGCAGTTAGCAG rmlD 604873 - 605727 + | dTDP-4-dehydrorhamnose reductase TERM 774 605740 - 605763 + F 100 -11.8 -4.78764 | opp_overlap 605740 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 775 605763 - 605740 - f 100 -9.6 -4.64598 | opp_overlap 605740 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 776 606878 - 606854 - g 70 -3.5 -4.90266 | opp_overlap 606869 TGGACCAAGCAAAAA GGGCAATTAGC AGA GCTGATTAACC AAGTTGATGCAGGTT rgpAc 605846 - 607000 + | alpha-(1,2)-rhamnosyltransferase rgpBc 606990 - 607922 + | alpha-L-Rha alpha-1,3-L-rhamnosyltransferase rgpCc 607925 - 608728 + | polysaccharide export ABC transporter permease protein TERM 777 609517 - 609503 - g 70 -2.8 -5.055 | TGAATGCTGAAAAAA TATCTG TAT CTGATA TTGCCAAAGATTTGA rgpDc 608728 - 609933 + | polysaccharide export ATP-binding protein rgpEc 609958 - 610965 + | glycosyltransferase TERM 778 612323 - 612313 - g 74 -4 -5.05153 | ATGTTAAAAAACAAA TTGA TTT TCAA GCTATGGATACATTT rgpFc 610962 - 612707 + | alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L-rhamnosyltransferase TERM 779 612848 - 612860 + G 74 -4.9 -4.77775 | GTAAACTATTATGCT CATTT ACT AAATG TTTCTTTTGTGGGAT M5005_Spy_0609 612704 - 615178 + | phosphoglycerol transferase TERM 780 615831 - 615847 + G 76 -6.6 -4.33105 | opp_overlap 615830 CTAAGGTTAATTGAC CGTTCA TTGAT TGAACG TTTTGCTAATCATTA M5005_Spy_0610 615357 - 616052 + | glycosyltransferase M5005_Spy_0611 616054 - 616395 + | hypothetical protein amrA 616388 - 617674 + | transcriptional activator M5005_Spy_0613 617655 - 619151 + | hypothetical protein TERM 781 619165 - 619203 + F 100 -10.6 -4.5265 | opp_overlap 619165 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT TERM 782 619203 - 619165 - f 79 -10.6 -2.91467 | opp_overlap 619165 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT pepT 619245 - 620468 + | peptidase T ebsA 620509 - 620997 + | pore forming protein TERM 783 621001 - 620980 - T 85 -6.6 -5.32882 | opp_overlap 620980 CAGCATGATAAAAAA GCCCTTAC TCGAGG GTAAGAGC TTTAGTTGGGCAAGA M5005_Spy_0616 621181 - 620984 - | ferredoxin M5005_Spy_0617 621230 - 621706 + | hypothetical protein TERM 784 621807 - 621775 - g 70 -9.3 -3.18433 | opp_overlap 621773 621776 621778, overlap 621773 621778 AGTGGAAAAAGTACA GTAGCCAAGATTATT GCA AAAAATCTTGGCTAT ACTTATCTAGATACT TERM 785 621776 - 621806 + G 83 -12.8 -2.89793 | opp_overlap 621775 621773 621778, overlap 621773 621778 GTGGAAAAAGTACAG TAGCCAAGATTATT GCA AAAAATCTTGGCTA TACTTATCTAGATAC TERM 786 621778 - 621804 + G 78 -11 -2.99717 | opp_overlap 621778 621775 621773, overlap 621776 621773 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT TERM 787 621804 - 621778 - g 77 -11 -2.78025 | opp_overlap 621776 621773 621778, overlap 621775 621773 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT cmk 621721 - 622401 + | cytidylate kinase TERM 788 622506 - 622539 + F 81 -5.9 -4.96848 | overlap 622474 622470 622511 TCCTATGGAATATTA TGTGTGCGGGCTTGA TTTA TCAAGTCCGCTTTCG TTTTTCTCTAAAAAA TERM 789 622511 - 622534 + F 100 -13.2 -4.40526 | overlap 622474 622470 622506 TGGAATATTATGTGT GCGGGCTTGA TTTA TCAAGTCCGC TTTCGTTTTTCTCTA infC 622563 - 623093 + | translation initiation factor IF-3 rpmI 623135 - 623332 + | 50S ribosomal protein L35 rplT 623391 - 623750 + | 50S ribosomal protein L20 TERM 790 623797 - 623771 - T 100 -9.7 -5.1287 | opp_overlap 623774 GCTATACCTAAAAAA TAACTTTCTAT TACCT ATAGAAAGTTA TAAAGAAACAAAAAT TERM 791 623816 - 623834 + T 85 -6.7 -5.22006 | opp_overlap 623816 623819 623824, overlap 623824 623831 AGAAACAAAAATGAA GGAGACG ATGGA CGTCTTC TTTTTATTATACTCA TERM 792 623831 - 623865 + T 79 -8.9 -3.7229 | opp_overlap 623816 623824, overlap 623816 623824 GGAGACGATGGACGT CTTCTTTTTATTATA CTCAA TATAATAAAAAGCAG TTTCCCATGTTTTAT TERM 793 624020 - 623997 - T 100 -11.2 -5.45652 | opp_overlap 624000 ATCGCCAATAAAAAA GAAGCAAAAT TATT ATTTTGCTTC TAGTCAGATCATTAA M5005_Spy_0622 626212 - 624041 - | phosphoglycerol transferase TERM 794 624199 - 624214 + g 71 -6.2 -4.23486 | overlap 624212 CTGATCCGAGTTTTG CTGAAA TATC TTTCAG TTGTTTTAACTGCTT TERM 795 626473 - 626457 - g 100 -5.1 -5.75822 | overlap 626458 TATAAAGGAAAAAAA TCAGTTG GTT CAACTGG TGACCAAGTCCAATC TERM 796 626472 - 626458 - g 79 -8.6 -4.03053 | overlap 626457 ATAAAGGAAAAAAAT CAGTTG GTT CAACTG GTGACCAAGTCCAAT M5005_Spy_0623 626359 - 627522 + | methyltransferase aroD 627519 - 628205 + | 3-dehydroquinate dehydratase TERM 797 629176 - 629165 - g 70 -5.8 -4.41348 | opp_overlap 629164 629165 TGGTCGTCAAACAAA CCAC TTAG GTGG CTTTGAAGGTGGCAT aroF 628299 - 629465 + | chorismate synthase M5005_Spy_0626 629526 - 629867 + | hypothetical protein TERM 798 629890 - 629917 + F 74 -3.5 -5.34055 | gap 1 AAGATAGGAAAAAAA CAGATTGCTGGC AGCTC GTCAG-GATCTG TTTTTTAGTGTTTAT TERM 799 630503 - 630517 + G 73 -5.7 -4.62302 | ATATTTTGATTGCCA CAGGA GGACA TCCTG TTTTTCCAGATATTG gor 630088 - 631440 + | glutathione reductase TERM 800 631467 - 631512 + T 83 -4.9 -5.4833 | gap 1, opp_overlap 631468, overlap 631468 TAAGGCAATAAAAAA TGATGTTAACAGTTTTTGAGGA AAG TCTTCTA-AACTGCTAGCATCG TTTTTTGTTAGGTGA folC.2 632796 - 631528 - | folylpolyglutamate synthase/dihydrofolate synthase M5005_Spy_0629 633266 - 632826 - | hypothetical protein TERM 801 633220 - 633236 + g 70 -2.9 -5.06414 | overlap 633208 TGCTCGGTAGGGACA CCTCCTG ATT TACGAGG TTTTTGTTGACGGGA TERM 802 633620 - 633630 + G 71 -6.8 -4.11484 | opp_overlap 633620 CCAATTAGGGACAAA TGCG TCT CGCA TTTTAGAAGCTTCCC nifS1 633501 - 634643 + | cysteine desulfhydrase thiI 634655 - 635869 + | thiamine biosynthesis protein ThiI TERM 803 635923 - 635936 + G 72 -3.1 -5.15634 | gap 1, opp_overlap 635923 635924, overlap 635925 TGATACTATTGAAAA GCCTCT ATA AG-GGC TTTTTTGCTGCAATG TERM 804 636127 - 636113 - g 95 -8.6 -5.40072 | overlap 636116 TGGGGTTCAAAAAAA TGAGCT AGC AGCTCA AAAATCTGCTCAGCC TERM 805 636684 - 636669 - g 71 -4 -4.94703 | overlap 636670 AAGATAAAAAAAGAA CTTCAG CTAG CTGAAA AAAAGGCTGACGTGA capA 635907 - 637199 + | capsule biosynthesis protein TERM 806 637314 - 637300 - f 79 -8.6 -3.74747 | GTAACGTTGACTAAA TGCACA TCC TGTGCA ACCGCGCGAAAATCG TERM 807 637640 - 637625 - g 87 -6.2 -5.19998 | ACAAGGAAAACAAAA GAAAGT TGTA ACTTTC AAATACAAACCTAAA rplU 637413 - 637727 + | 50S ribosomal protein L21 M5005_Spy_0634 637739 - 638065 + | hypothetical protein rpmA 638093 - 638386 + | 50S ribosomal protein L27 TERM 808 638408 - 638435 + F 100 -8.4 -6.11229 | opp_overlap 638410, overlap 638409 638410 AACATCGCATTATAT AAGGCTTTCCAG GTGT CTGGAAAGCCGA TTTTTTTATTTTGCT TERM 809 638409 - 638434 + F 100 -11.9 -4.23077 | opp_overlap 638410, overlap 638408 638410 ACATCGCATTATATA AGGCTTTCCAG GTGT CTGGAAAGCCG ATTTTTTTATTTTGC TERM 810 638410 - 638433 + F 100 -15.4 -3.11406 | opp_overlap 638410, overlap 638409 638408 CATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 811 638433 - 638410 - f 100 -15.4 -3.54951 | opp_overlap 638410 638409 638408 CATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 812 638906 - 638920 + G 78 -4.2 -5.24129 | opp_overlap 638899 638897, overlap 638899 CAGGAACAGTCTTGA CAAGTC AAG GACTAG TTTTTTATGAGAAAG M5005_Spy_0636 638734 - 639648 + | LysR family transcriptional regulator TERM 813 639815 - 639830 + G 70 -5.4 -4.35483 | overlap 639810 639808 CTTTTCCATATTGCA GGACCA GCAA TGGTTC TTTGTTGTCATAACG lsp 639645 - 640103 + | lipoprotein signal peptidase M5005_Spy_0638 640093 - 640983 + | ribosomal large subunit pseudouridine synthase D TERM 814 641296 - 641286 - f 74 -5.4 -4.76041 | GAGACGGATTAAAAA CATG CAT CATG ATACTTAATTGTGCT TERM 815 641323 - 641346 + F 90 -8.2 -5.34381 | overlap 641325 TGCTATATTTTGCTG AATCTCCTTG TTTC CAAGGAGATC TTTTTATTTGAATTT TERM 816 641325 - 641344 + F 100 -10.8 -4.2793 | overlap 641323 CTATATTTTGCTGAA TCTCCTTG TTTC CAAGGAGA TCTTTTTATTTGAAT TERM 817 641633 - 641597 - g 77 -11 -2.87881 | opp_overlap 641605 641607, overlap 641602 CAAGCCTTTTAGAGA TGACATGAGAGTTGAG GAAGA CACAACTCTGATGTCA GTAGATATTACAGGC pyrR 641379 - 641900 + | pyrimidine regulatory protein PyrR pyrP 641916 - 643175 + | uracil permease pyrB 643236 - 644171 + | aspartate carbamoyltransferase catalytic subunit TERM 818 645017 - 645005 - g 77 -7.7 -4.14472 | opp_overlap 645014 CTAAGACTTGTAAAA TGACC TTT GGTCA TCGTGGCTTTAACCA carA 644215 - 645297 + | carbamoyl phosphate synthase small subunit TERM 819 645560 - 645574 + G 73 -7.8 -3.9461 | AAAAAATCATGGTTA TCGGGT CTG GCCCGA TTATTATTGGACAAG TERM 820 648158 - 648183 + G 71 -5.3 -4.54727 | opp_overlap 648138 TTTATCCCCAAAGTC CACTGGTGCAT ATCA AAGCGCCTGTG TTTTCATTTACAAAG carB 645523 - 648699 + | carbamoyl phosphate synthase large subunit TERM 821 648737 - 648712 - f 100 -10.7 -5.85011 | opp_overlap 648712, overlap 648727 648729 TAAAAATTAAAAAAA TCATTTTTAAG AAAA CTTAAAAATGA TTTTTTTAGATTATA TERM 822 648712 - 648737 + F 100 -10.7 -5.55698 | opp_overlap 648712 648727 648729 TAAAAATTAAAAAAA TCATTTTTAAG AAAA CTTAAAAATGA TTTTTTTAGATTATA TERM 823 649457 - 649436 - g 72 -9.5 -2.974 | overlap 649433 GCAAGATTTAAATGA TGCTTATGC AGAT GCACAAGCA GAAGTAAATAAAGCG M5005_Spy_0644 648999 - 650177 + | periplasmic component of efflux system M5005_Spy_0645 650177 - 650887 + | ABC transporter ATP-binding protein M5005_Spy_0646 650899 - 652119 + | ABC transporter permease protein TERM 824 652299 - 652330 + F 73 -8.8 -3.29511 | overlap 652300 AGTGATACATCTCTT ATTTCTAGCTGAAC TTCG GTTCGGCTAGGAAG TTGTCAGGCAATGAG TERM 825 652300 - 652329 + F 86 -12.3 -2.57564 | overlap 652299 GTGATACATCTCTTA TTTCTAGCTGAAC TTCG GTTCGGCTAGGAA GTTGTCAGGCAATGA M5005_Spy_0647 652373 - 654106 + | glycerophosphoryl diester phosphodiesterase TERM 826 654154 - 654108 - f 95 -12.6 -3.73224 | opp_overlap 654097 654109 654116 654120, overlap 654109 654120 GTAGTCTTTATTAAA GGTTTAAGGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAACT GAGTTATACTGTTTA TERM 827 654109 - 654153 + F 100 -18.3 -2.63636 | opp_overlap 654109 654108 654120, overlap 654116 654120 TAGTCTTTATTAAAG GTTTAAGGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 828 654153 - 654109 - f 100 -16.1 -2.8372 | opp_overlap 654109 654116 654120, overlap 654108 654120 TAGTCTTTATTAAAG GTTTAAGGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 829 654116 - 654146 + F 95 -12.8 -3.62418 | opp_overlap 654109 654108 654120, overlap 654109 654120 TATTAAAGGTTTAAG GAAAGTGTCAAG AAAAAAA CTTGACACTTTC TTTAAACTGAGTTAT TERM 830 654142 - 654120 - f 76 -7.8 -3.922 | opp_overlap 654120 654116 654109, overlap 654109 654108 AAAGGTTTAAGGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG TERM 831 654120 - 654142 + F 81 -7.8 -4.44046 | opp_overlap 654109 654108 654120, overlap 654116 654109 AAAGGTTTAAGGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG rpsP 654233 - 654505 + | 30S ribosomal protein S16 M5005_Spy_0649 654515 - 654754 + | RNA binding protein TERM 832 654804 - 654780 - g 100 -15.9 -4.20531 | opp_overlap 654780 654803, overlap 654800 654803 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAAA TERM 833 654780 - 654804 + G 100 -15.9 -4.65895 | opp_overlap 654780 654800 654803, overlap 654803 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAAA M5005_Spy_0650 654763 - 654870 + | hypothetical protein TERM 834 655049 - 655084 + F 100 -18 -4.40333 | opp_overlap 655060, overlap 655039 CAGTTTTTTGGGGGG CATTCCTAAAATTAAG TATA CTTAATTTTAGGAATG TTTATATTCTTTACA TERM 835 655218 - 655208 - f 73 -4 -5.20216 | opp_overlap 655208 TATACGATCAAAAAA GTTA GAG TAAC TTTATAAAACAGTGG TERM 836 655325 - 655283 - f 80 -5 -5.28778 | opp_overlap 655314, overlap 655314 ATTATCTATAAAAAA TCCCAAAAGTAGTTTGTT TCCAGTT AATGAACTTCTTTTGGGA AGGCTTTTTTGCTGA M5005_Spy_0651 655665 - 658691 + | cell surface protein M5005_Spy_0652 658711 - 659112 + | putative cytoplasmic protein TERM 837 659214 - 659160 - T 100 -16.8 -5.12707 | opp_overlap 659163 659211 TTAAACGCTAAAAAA CAAGCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGCTTA TTAGGTGCTCTTAAT TERM 838 659163 - 659211 + T 100 -22.9 -3.70511 | opp_overlap 659160 AACGCTAAAAAACAA GCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGC TTATTAGGTGCTCTT czcD 660167 - 659292 - | cobalt-zinc-cadmium resistance protein TERM 839 659608 - 659588 - G 86 -4.7 -5.48825 | opp_overlap 659589, overlap 659589 CACCATCTAAAAAAA TGTTAGCAG TTG CTACTAACT TTGGAAGAGCTTTAG TERM 840 659607 - 659589 - G 73 -8.2 -3.8821 | opp_overlap 659589, overlap 659588 ACCATCTAAAAAAAT GTTAGCAG TTG CTACTAAC TTTGGAAGAGCTTTA M5005_Spy_0654 660303 - 660824 + | TetR family transcriptional regulator rimM 661039 - 661557 + | 16S rRNA-processing protein TERM 841 661697 - 661676 - g 91 -9.5 -4.60487 | GATTATGCTGAAAAA GCTCGTCAT GTGG ATGACGAAC CCTATGGTGGGGGCC TERM 842 661835 - 661856 + G 93 -6.7 -5.40464 | opp_overlap 661835, overlap 661826 GCTTATGCTGAAGAA TTAGCTCTT GAGG AAGAGTTAA TTTTTATTTGTGGTC trmD 661547 - 662278 + | tRNA (guanine-N(1)-)-methyltransferase TERM 843 662549 - 662573 + G 72 -4.3 -4.74103 | opp_overlap 662548 662546 662552, overlap 662550 662552 TAAAAGAAGAAGTAT TAACCTTTGAC AAG GTTAAAGGTGG TTTTTCGATTAGGAC trxB 662278 - 663270 + | thioredoxin reductase TERM 844 664051 - 664073 + G 76 -9.2 -3.76641 | CTTATCATTGTTAGT CCGATTTCAA CTG TTGCAATCGG TTTAGCTATTGGGCT M5005_Spy_0658 663448 - 664506 + | regulatory protein apbA 664519 - 665442 + | 2-dehydropantoate 2-reductase TERM 845 665462 - 665493 + F 100 -9.6 -5.58179 | TATCAAATCGTTATA CTCAATATTATGGC TAAA GCTTTAATATTGAG TTTTTTGTTATGCTG fruR 665698 - 666411 + | fructose repressor fruB 666408 - 667319 + | 1-phosphofructokinase fruA 667316 - 669262 + | PTS system, fructose-specific IIABC component TERM 846 669291 - 669312 + F 90 -8.1 -5.23316 | opp_overlap 669291 TTTTTCTTACTAAAA CTAGAATCT GTCA AGGTTCTAG TTTTTTGCTATACTA mur1.1 669361 - 669954 + | autolysin mur1.2 670106 - 670813 + | autolysin TERM 847 670911 - 670879 - T 100 -19.5 -3.91911 | opp_overlap 670879, overlap 670904 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT TERM 848 670879 - 670911 + T 100 -19.5 -4.74084 | opp_overlap 670879 670904 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT M5005_Spy_0665 671088 - 670870 - | transposase M5005_Spy_0666 671410 - 671291 - | hypothetical protein M5005_Spy_0667 671594 - 671385 - | exotoxin type C precursor TERM 849 671582 - 671600 + gr 72 -3.2 -5.093 | overlap 671583 TAGTCAAATAAATTT CTTTTGAT TCC ATCAAAAA TTTTCTTATTTTAAA mac 672788 - 671769 - | IgG-degrading protease TERM 850 672068 - 672096 + g 100 -6.1 -5.95539 | CTTCGGTTAACTCTT TCTTAATGAGATC ACT GATTTCTTTGAGA TTTTTTTCTTTAAAA M5005_Spy_0669 672944 - 673063 + | phage protein TERM 851 673088 - 673069 - f 100 -6.4 -6.04953 | opp_overlap 673068 673071 AGACAAATAAAAAAA GACCTCAT CCAG AAGAGGTC GTGTATAACTGGGGA M5005_Spy_0670 673287 - 673463 + | nucleoside diphosphate kinase TERM 852 673501 - 673512 + F 78 -2.2 -5.59357 | GGTGCAGTACAAGAC CACT AACG GGTG TTTTTTTGGTATAAT M5005_Spy_0671 673691 - 674071 + | transposase M5005_Spy_0672 674071 - 674919 + | degV family protein TERM 853 675085 - 675057 - g 77 -11.1 -2.91027 | opp_overlap 675061, overlap 675050 675060 675061 GTATGAAATTAATGA CAATGCCTTCTGA GTT TCAGAAGGCTTTA CCCATATTGACTAAA TERM 854 675082 - 675060 - g 82 -10.6 -3.58914 | opp_overlap 675061, overlap 675057 675050 675061 TGAAATTAATGACAA TGCCTTCTGA GTT TCAGAAGGCT TTACCCATATTGACT TERM 855 675061 - 675081 + G 100 -14.1 -3.6106 | opp_overlap 675061 675060 675057 675050 GAAATTAATGACAAT GCCTTCTGA GTT TCAGAAGGC TTTACCCATATTGAC TERM 856 675081 - 675061 - g 93 -14.1 -2.74625 | opp_overlap 675061, overlap 675060 675057 675050 GAAATTAATGACAAT GCCTTCTGA GTT TCAGAAGGC TTTACCCATATTGAC papS 675044 - 676252 + | tRNA CCA-pyrophosphorylase M5005_Spy_0674 676249 - 678126 + | ABC transporter ATP-binding protein uup TERM 857 678197 - 678179 - f 82 -7.4 -4.46621 | GATAATAGAAAAGAA GGGCTC TTGCACT GAGCCC CAAAAGTTGGCTACT TERM 858 678221 - 678265 + F 77 -5.1 -5.13722 | opp_overlap 678227, overlap 678219 678222 678227 678263 678264 GGCTACTCTATTTGA AGTAAAGGATTTAGTTCTGTG TTG TAGAGGACTAAGTCCTTTTCG TTTTATTTTAATACG TERM 859 678222 - 678264 + F 77 -8.6 -3.67149 | opp_overlap 678227, overlap 678219 678221 678227 678263 GCTACTCTATTTGAA GTAAAGGATTTAGTTCTGTG TTG TAGAGGACTAAGTCCTTTTC GTTTTATTTTAATAC TERM 860 678227 - 678259 + F 88 -7.1 -4.83677 | opp_overlap 678227, overlap 678219 678222 678221 TCTATTTGAAGTAAA GGATTTAGTTCTGTG TTG TAGAGGACTAAGTCC TTTTCGTTTTATTTT TERM 861 678371 - 678386 + F 77 -3.3 -5.55695 | AGAACTCGTCTTTGT CCATT CTTTAT AATGG TTTTTTGTCTTCTTC TERM 862 678425 - 678438 + G 76 -2.3 -5.42259 | opp_overlap 678425 GATGCTTCTTTCAAA CGGAG TTCC CTCGG TTTTTTTAGCGCTAA TERM 863 678490 - 678535 + G 100 -16.4 -3.80625 | opp_overlap 678493, overlap 678493 678495 CTTAATGTCATACAA AAACACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTGTAG TTTACATTATGGCGC TERM 864 678532 - 678493 - g 100 -22.5 -4.98522 | opp_overlap 678493 678490 678495 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 865 678493 - 678532 + G 100 -22.5 -2.98778 | opp_overlap 678493, overlap 678490 678495 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 866 678495 - 678530 + G 100 -19.3 -3.04183 | opp_overlap 678493, overlap 678493 678490 TGTCATACAAAAACA CCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGG TGTAGTTTACATTAT M5005_Spy_0675 678383 - 678535 + | hypothetical protein M5005_Spy_0676 678544 - 678762 + | hypothetical protein fms 679018 - 679428 + | peptide deformylase TERM 867 679436 - 679456 + T 79 -4 -5.40072 | opp_overlap 679436 TAATTTAACAAAAAA CCTAGAGT AGGAC GCTTTAGG TTTTTTTGGCAAAGA TERM 868 679446 - 679436 - T 84 -5.4 -5.5074 | opp_overlap 679436 TAATTTAACAAAAAA CCTA GAG TAGG ACGCTTTAGGTTTTT M5005_Spy_0678 681522 - 679510 - | 5'-nucleotidase TERM 869 679986 - 679972 - G 71 -5 -4.59944 | opp_overlap 679976, overlap 679973 679974 ACCACCATAAAGAAA GTCGTT GAC AACAAC GGTGTAAGTAGTTGT TERM 870 681660 - 681641 - H 77 -5.8 -4.69027 | AAAGCGATTTAAAAA CAAACGAT ACAG ATCATTTG AAGTTATATAGTTAG M5005_Spy_0679 681742 - 682392 + | GTP pyrophosphokinase TERM 871 682452 - 682422 - g 85 -11.2 -3.37245 | opp_overlap 682450 TTAGCTGAAGACGAA TGGCAGATGTCTAA TGT TTTGACAACTGCCA TGACTCATCAAGGTT M5005_Spy_0680 682395 - 683063 + | two-component response regulator TERM 872 683235 - 683225 - g 70 -5.4 -4.41616 | ATTTCCTCAAATAAA GGTA AAT TACC TGGCACTACGGAAAG M5005_Spy_0681 683072 - 684304 + | two-component system histidine kinase TERM 873 684371 - 684387 + F 100 -9.4 -4.71482 | opp_overlap 684374 ATAAACGATGCTTAA CCAGCC CATGA GGCTGG TTTTTAACGTTTAAT mvaK1 684583 - 685476 + | mevalonate kinase mvaD 685458 - 686402 + | diphosphomevalonate decarboxylase mvaK2 686395 - 687402 + | phosphomevalonate kinase M5005_Spy_0685 687395 - 688384 + | isopentenyl pyrophosphate isomerase TERM 874 688594 - 688551 - T 100 -11.3 -4.63044 | gap 1, opp_overlap 688558, overlap 688558 ATGTATAGAAATAAA GATTAAACACCCATGTAAAC CAATT GTTTACATGGGTGTTTG-CC TTATATTAGTTGTTT TERM 875 688558 - 688588 + T 100 -17.1 -3.85509 | opp_overlap 688551 688558 GAAATAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG TERM 876 688588 - 688558 - T 100 -17.1 -4.10269 | opp_overlap 688558, overlap 688551 GAAATAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG M5005_Spy_0686 689891 - 688614 - | 3-hydroxy-3-methylglutaryl-coenzyme A reductase TERM 877 689136 - 689161 + g 90 -8.3 -5.05782 | overlap 689138 CCGGTAAGGATCTAC TTGAGCTAGTC GGCT GGCTAGCTCTA TTTTTTGAGCTAACT TERM 878 689138 - 689159 + g 90 -10.9 -4.15748 | overlap 689136 GGTAAGGATCTACTT GAGCTAGTC GGCT GGCTAGCTC TATTTTTTGAGCTAA TERM 879 689464 - 689478 + g 85 -2.8 -5.86976 | overlap 689462 GGATAAGCTTTATTT GCCAAT GCA ATTAGC TTTTTTGTTTTATGA TERM 880 689836 - 689848 + g 71 -4.1 -4.86731 | TCGATAAGTTGGAGG CGTTC TTC GAATG TTTTCTTTGAAAAAC mvaS.1 691053 - 689878 - | hydroxymethylglutaryl-CoA synthase TERM 881 690276 - 690248 - G 86 -11.9 -3.28791 | opp_overlap 690248, overlap 690252 ATTTGTTTGCTATAA CTAATAGAAGCTT GAA AGGCTTCTATTAG TTTTTCCCTGTGTTC TERM 882 690248 - 690276 + g 100 -14.1 -4.74453 | opp_overlap 690248 690252 ATTTGTTTGCTATAA CTAATAGAAGCTT GAA AGGCTTCTATTAG TTTTTCCCTGTGTTC thyA 691262 - 692101 + | thymidylate synthase dyr 692181 - 692678 + | dihydrofolate reductase M5005_Spy_0690 692698 - 692868 + | hypothetical protein TERM 883 693352 - 693330 - g 70 -5.7 -4.42386 | gap 1, opp_overlap 693315 TGTGGATTTACAAAA GTCCAA-CAT TTTG ATGATTGGAC CAACAGGTTCAGGAA TERM 884 693684 - 693656 - g 70 -9 -3.1706 | gap 2 AAGGTACGGTAGCAA GTG-TTCC-CCCAC AAG GTGGGCGGAAGCAC CCTAATCAAGAAATG clpX 692998 - 694227 + | ATP-dependent protease ATP-binding subunit M5005_Spy_0692 694237 - 694836 + | GTPase EngB TERM 885 694866 - 694883 + F 76 -4.1 -5.18726 | TTATCTATGCTAAAA CATTCTC AGTA GAGGGTG TTTTTCTTATCGAAA M5005_Spy_0693 694984 - 695727 + | hypothetical protein TERM 886 695712 - 695744 + T 74 -3.3 -5.36314 | opp_overlap 695712 AGCGCTAAAAAAAAG TCCGTCAAGTGTATA ACG TAGTCACAAGACGGA TTTTTTCATGTTTTG clpL 697884 - 695785 - | ATP-dependent protease ATP-binding subunit TERM 887 695821 - 695838 + g 75 -2.7 -5.1925 | overlap 695815 695822 CACTAGTTGTCCTTC TTTTAGG ATTG CCTGAAG TTTTTTGACTTCTGG TERM 888 698596 - 698579 - g 74 -4.2 -5.17576 | TACTAATGGAAAAAA TTGTTG CAACAC CAACAA AAGAATACATCTGGG rpiA 698263 - 698946 + | ribose-5-phosphate isomerase A TERM 889 699062 - 699097 + G 71 -7 -4.03141 | gap 1 TTGGTTGTTTTAGAC TCTGTCGGTAT-TGGTG CAG CACCAGATGCTGACAAA TTCTTTAATGCTGGT TERM 890 699239 - 699228 - g 72 -4.4 -4.8083 | CAATACCACTAAAAA CTGT TCCA ACAG AAGACAATCCTACTG deoB 699023 - 700234 + | phosphopentomutase arsC 700253 - 700693 + | arsenate reductase family protein punA 700677 - 701486 + | purine nucleoside phosphorylase deoD2 702149 - 702862 + | purine nucleoside phosphorylase TERM 891 702897 - 702871 - g 83 -8.9 -4.09805 | gap 1, opp_overlap 702870 702874 702876 702878, overlap 702874 702876 TGACTAATAATCAAA CACTAGACATCC TTTT GGATGTCTA-TG CTTATAATCACGCCT TERM 892 702895 - 702874 - g 81 -11.7 -2.77051 | opp_overlap 702874 702870 702876 702878, overlap 702871 702876 CTAATAATCAAACAC TAGACATCC TTTT GGATGTCTA TGCTTATAATCACGC TERM 893 702874 - 702895 + G 81 -11.7 -2.86271 | opp_overlap 702871 702874 702876, overlap 702870 702876 702878 CTAATAATCAAACAC TAGACATCC TTTT GGATGTCTA TGCTTATAATCACGC TERM 894 702893 - 702876 - g 71 -9.9 -2.91872 | opp_overlap 702876 702874 702870 702878, overlap 702874 702871 AATAATCAAACACTA GACATCC TTTT GGATGTC TATGCTTATAATCAC TERM 895 702876 - 702893 + G 72 -9.9 -2.98072 | opp_overlap 702874 702871 702876, overlap 702874 702870 702878 AATAATCAAACACTA GACATCC TTTT GGATGTC TATGCTTATAATCAC cpsX 702855 - 703643 + | transcription regulator LytR cpsY 704576 - 703722 - | LysR family transcriptional regulator M5005_Spy_0702 704849 - 705385 + | hypothetical protein TERM 896 705591 - 705614 + F 100 -12.4 -4.81685 | overlap 705588 TTTTAGTTTGCTGTA GCCTCGCTTC TTTG GTAGCGAGGC TTTTTGGTGCTTAAT TERM 897 705685 - 705721 + G 93 -9.6 -4.7153 | opp_overlap 705714, overlap 705712 AGAACGCCCAATTAT TGCTTTAGACTTTTCA TCATT TGAGGAGACTAAAGCA TTTTTAGACTTATTT pyrF 705662 - 706354 + | orotidine 5'-phosphate decarboxylase pyrE 706412 - 707041 + | orotate phosphoribosyltransferase amiC 707238 - 708692 + | amidase TERM 898 708940 - 708918 - g 75 -2.7 -5.34309 | gap 1 ACTATCAAAGAAAAA GGGGT-GTTA AAAG TAGCTACCCC AGGAACCTATCAGCC TERM 899 709270 - 709257 - g 84 -2.3 -5.72207 | TGGAAAGGAAAAAAA GCAGC CGGC GCTTC TGGAACAGAATACAT M5005_Spy_0706 708810 - 709673 + | cystine-binding protein M5005_Spy_0707 709702 - 710352 + | cystine transport system permease protein TERM 900 710375 - 710403 + F 100 -9.7 -4.33928 | opp_overlap 710373 710377, overlap 710377 TAAAAAACGAATATT AACCCTGGAAATA TCA TATTTTCAGGGTC TTTCTATTTAAAATG TERM 901 710377 - 710401 + F 95 -12.3 -3.76586 | opp_overlap 710373 710377, overlap 710375 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA TERM 902 710401 - 710377 - f 81 -10.1 -3.46844 | opp_overlap 710377 710375, overlap 710373 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA ung 710485 - 711138 + | uracil-DNA glycosylase TERM 903 711848 - 711859 + G 72 -4.4 -4.82678 | TTTTAATGAAGGTAT TGCT GAGG AGCA TTTTCATTTTTGTGG pyrC 711270 - 712538 + | dihydroorotase TERM 904 712584 - 712560 - T 100 -11.5 -5.80951 | opp_overlap 712560 AGTTAAAACAAAAAA GCTTGACTTTC AGA GAAAGTCAGGC TTTTAGTAAATTTAT TERM 905 712560 - 712584 + T 100 -13.7 -4.33767 | opp_overlap 712560 AGTTAAAACAAAAAA GCTTGACTTTC AGA GAAAGTCAGGC TTTTAGTAAATTTAT M5005_Spy_0710 713237 - 712596 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 906 713319 - 713300 - H 73 -3.6 -5.06103 | overlap 713303 AGAATTCGGAAAAAA TTAGCAAA TTAT TTTGCAAA ATTGGTAAAAAACTT TERM 907 714007 - 713989 - g 81 -7.5 -4.56597 | TTTTCTTTTGAAAAA TGTCAAG ATGAG CTTGACA GATCTTCGTGGAGAT TERM 908 714615 - 714599 - g 86 -2.3 -6.01725 | AAGAAAAACAAAAAA GACAA AGGCTTG TTGTC GGGAAAACTAACCCC parE 713372 - 715321 + | DNA topoisomerase IV subunit B TERM 909 716336 - 716326 - g 73 -6.8 -4.15748 | TGAGTTGAAAAAAGA GGCT GAT AGCC AAACCATTCTAAATT parC 715412 - 717871 + | DNA topoisomerase IV subunit A TERM 910 717868 - 717893 + F 100 -10.7 -4.49344 | opp_overlap 717867 717875, overlap 717875 GGTAGCTAGAACACG TTAAAAAGAGT GAAA ACTCTTTTTAA TTTTATGATAAATTT TERM 911 717886 - 717875 - f 70 -4.4 -4.67556 | opp_overlap 717875 717868, overlap 717867 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGA TERM 912 717875 - 717886 + F 76 -4.4 -5.1417 | opp_overlap 717867 717875, overlap 717868 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGA TERM 913 718141 - 718130 - g 71 -7.2 -3.91858 | opp_overlap 718130 TACATATCTCAGAAA GCGC TCCA GCGC TTCATTATGGACAAC bcaT 717994 - 719016 + | branched-chain amino acid aminotransferase TERM 914 719038 - 719023 - f 75 -9 -3.46858 | opp_overlap 719023, overlap 719021 719019 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG TERM 915 719023 - 719038 + F 95 -9 -5.50313 | opp_overlap 719021 719019 719023 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG M5005_Spy_0714 719080 - 719310 + | putative cytoplasmic protein TERM 916 719338 - 719363 + F 71 -7.8 -3.61517 | ACACTTGCCAGCTTA CAAAAACTAT GATAGA ATAGTTTTTG TTGTTACGGAAAGAT TERM 917 719663 - 719678 + F 89 -9 -4.64334 | opp_overlap 719663 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT TERM 918 719678 - 719663 - f 85 -9 -4.26344 | opp_overlap 719663 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT rpsA 719701 - 720906 + | 30S ribosomal protein S1 TERM 919 720943 - 720912 - T 85 -11.8 -3.12069 | opp_overlap 720913 720919, overlap 720919 TGAATTGTAATAAAT CTAAAAAGTTGAGG TTTT CCTCAACTTTTTAT TGTCTTCTGGTTAGA TERM 920 720913 - 720942 + T 100 -15.3 -3.79995 | opp_overlap 720912 720919, overlap 720919 GAATTGTAATAAATC TAAAAAGTTGAGG TTTT CCTCAACTTTTTA TTGTCTTCTGGTTAG TERM 921 720919 - 720936 + T 100 -9.9 -5.31072 | opp_overlap 720912 720919, overlap 720913 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 922 720936 - 720919 - T 100 -9.9 -4.86939 | opp_overlap 720919 720913, overlap 720912 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 923 721124 - 721109 - T 76 -2.6 -5.43487 | gap 1, opp_overlap 721109 721111 AAATCATATAAAAAA GCCTTAT TTG AT-AGGC TCTTTTTGTTTCTTG TERM 924 721316 - 721326 + T 71 -5.4 -4.58663 | opp_overlap 721316 TAATTAATGATGAGA TGGT GAA ACCA TTTTTAGCAAGTGCT M5005_Spy_0716 721755 - 721453 - | hypothetical protein M5005_Spy_0717 721954 - 722940 + | hypothetical protein TERM 925 722951 - 722970 + F 89 -7.2 -5.31275 | opp_overlap 722951 CCTAATATCTCAAAA CAAATCAG GAAA CTGGTTTG TTTTTTGTGATACAG TERM 926 723016 - 723000 - f 75 -8.1 -3.86916 | GATGATGAGACCAAA TTGCAAA GAC TTTGCAA CAAGATACAAGTGAA M5005_Spy_0718 723011 - 723202 + | hypothetical protein M5005_Spy_0719 723251 - 723670 + | glutathione S-transferase TERM 927 724340 - 724353 + G 76 -4.5 -5.06414 | opp_overlap 724334 CGGCATTAACAGCAC CTGCT AGTA GGCAG TTTTTATTAGGACAG M5005_Spy_0720 723907 - 724815 + | putative exfoliative toxin TERM 928 724909 - 724882 - T 71 -3.3 -5.20216 | opp_overlap 724882 GAGATTACTAAAAAA GAGGCCGGCAC TTTAAT GTGCTAGTCTC TTTTAAATTGATCCA TERM 929 724940 - 724959 + T 71 -3.4 -5.15117 | overlap 724954 TTGTCACGTTAGCGA GCTACACG ACGA CGCGCAGC TTTTTTGCGGTTTTC M5005_Spy_0721 725109 - 724933 - | hypothetical protein TERM 930 724966 - 724989 + g 76 -3.1 -5.29445 | overlap 724954 ACGCGCAGCTTTTTT GCGGTTTTC TTCAAT GAAAGCAGC TTTTTCTTCTTCAGG miaA 725243 - 726142 + | tRNA delta(2)-isopentenylpyrophosphate transferase hflX 726215 - 727453 + | GTP-binding protein M5005_Spy_0724 727446 - 728081 + | hypothetical protein elaC 728096 - 729025 + | ribonuclease Z M5005_Spy_0726 729025 - 729789 + | short chain dehydrogenase TERM 931 729842 - 729824 - g 85 -8.9 -4.17186 | opp_overlap 729824 729827, overlap 729819 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 932 729824 - 729842 + G 74 -8.9 -3.59979 | opp_overlap 729824 729819, overlap 729827 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 933 729878 - 729864 - g 80 -6.4 -4.82128 | CTAGCAAAGACAAAA GGTCTA ACC CAGACC GCCGCTCAGTTGATT recJ 729786 - 731996 + | single-stranded-DNA-specific exonuclease apt 732147 - 732665 + | adenine phosphoribosyltransferase dnaD 732746 - 733429 + | DNA replication protein nth 733426 - 734082 + | endonuclease III TERM 934 734066 - 734094 + F 93 -7.5 -5.61596 | opp_overlap 734072 ATCAAGATACTTATG GAAAATCGAAAGC CTA GCCTTTGGTTTTC TTTTTTTATGGAGGT M5005_Spy_0731 734154 - 734738 + | para-aminobenzoate synthase component I/anthranilate synthase component I TERM 935 735537 - 735527 - g 73 -6.8 -4.15066 | overlap 735534 735535 TACGGAGAAATTAAA GGAG AAA CTCC AAGGGTGGAAAGAAG M5005_Spy_0732 734829 - 735617 + | NIF3-related protein TERM 936 736491 - 736479 - g 70 -3.4 -4.83615 | opp_overlap 736479 CAGGTTTTAGAAAAA CTTG AAATG CAAG CTCTTACTTATTTGC M5005_Spy_0733 735657 - 736763 + | glycine/D-amino acid oxidase family protein cpsFO 736821 - 737690 + | glucose-1-phosphate thymidylyltransferase cpsFP 737690 - 738283 + | dTDP-4-dehydrorhamnose 3,5-epimerase cpsFQ 738527 - 739567 + | dTDP-glucose 4,6-dehydratase TERM 937 739621 - 739570 - f 100 -14.3 -4.9448 | gap 2, opp_overlap 739577, overlap 739577 AGTGATTAAATAAAA CATTAAAGAACCTTGTCATATCAAC GATA ATTGATATGACAAGGTTCTTT--TG ATAGTTTAAATTGAT TERM 938 739616 - 739577 - f 100 -20.4 -4.14724 | opp_overlap 739577, overlap 739570 AAATAAAACATTAAA GAACCTTGTCATATCAAC GATA ATTGATATGACAAGGTTC TTTTGATAGTTTAAA TERM 939 739577 - 739616 + F 100 -19.7 -4.39386 | opp_overlap 739577 739570 AAATAAAACATTAAA GAACCTTGTCATATCAA CGATAA TTGATATGACAAGGTTC TTTTGATAGTTTAAA M5005_Spy_0737 739788 - 740264 + | mutator mutT protein/7,8-dihydro-8-oxoguanine-triphosphatase M5005_Spy_0738 740322 - 741503 + | hypothetical protein M5005_Spy_0739 741493 - 742740 + | TPR repeat-containing protein TERM 940 742783 - 742746 - T 100 -7.7 -5.89921 | opp_overlap 742746 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGAA ATAA CTTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA TERM 941 742746 - 742783 + T 100 -13.6 -5.32565 | opp_overlap 742746 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGA AATAAC TTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA fbp 744085 - 742799 - | fibronectin-binding protein M5005_Spy_0741 744450 - 744178 - | fibronectin-binding protein M5005_Spy_0742 744497 - 744622 + | hypothetical protein TERM 942 744710 - 744734 + F 93 -7.9 -5.45802 | opp_overlap 744710 744708 TTGGATTTCACAAGA GCGCCTAGTAA TCA TTACTAAGTGC TTTTTCTTTTGAGAA TERM 943 745780 - 745767 - g 72 -3.1 -5.14965 | ATTGCTATTAAAAAA GAAGA TTTT CCTTC AGCTTCTTTTATTGA M5005_Spy_0743 744804 - 745802 + | ABC transporter substrate-binding protein M5005_Spy_0744 745792 - 745971 + | hypothetical protein M5005_Spy_0745 746148 - 747017 + | ABC transporter permease protein M5005_Spy_0746 747014 - 747772 + | ABC transporter ATP-binding protein TERM 944 747786 - 747810 + F 85 -6.5 -5.38497 | opp_overlap 747773 747786 AATCAACGATCTAAA TCATTGACTAA TAA TAAGTCAGTGA TTTTTTGATTTCCAT M5005_Spy_0747 747976 - 749637 + | Zn-dependent hydrolase TERM 945 749647 - 749674 + F 89 -9.3 -4.19735 | gap 1, opp_overlap 749646 749644 749647, overlap 749651 CGTTAGTGAAAATAG GAAGGTTAGGCA AAAAC TGCCTA-CCTTC TTTGATTTTAACAAC TERM 946 749674 - 749647 - f 76 -10 -2.81208 | gap 1, opp_overlap 749647 749651, overlap 749646 749644 CGTTAGTGAAAATAG GAAGGTTAGGCAA AAA CTGCCTA-CCTTC TTTGATTTTAACAAC estA 749770 - 750555 + | acetyl esterase M5005_Spy_0749 750585 - 750911 + | hypothetical protein TERM 947 752577 - 752552 - g 70 -3.3 -4.84359 | gap 1 TTACCTTGAGAAAAA GGCAGAGCTA GAAGAAT TAGCCC-GCC TAGCAGCAGGAGAGA M5005_Spy_0750 750957 - 752864 + | ABC transporter ATP-binding protein TERM 948 752868 - 752894 + F 88 -7.5 -4.94992 | gap 1, opp_overlap 752868 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGC TERM 949 752894 - 752868 - f 88 -7.5 -5.02439 | gap 1, opp_overlap 752868 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGC TERM 950 753206 - 753222 + G 73 -9.5 -3.1478 | opp_overlap 753204, overlap 753204 AAAATGGAACGTATT CGTGAAT TTG ATTCACG TATTAATAAACTCGT TERM 951 753955 - 753944 - g 80 -4.4 -5.28942 | GAGTGGAAAGAAAAA GATC CAAT GATC AAATATCGTACTTAT acoA 753149 - 754117 + | pyruvate dehydrogenase E1 component alpha subunit acoB 754173 - 755174 + | pyruvate dehydrogenase E1 component beta subunit TERM 952 755470 - 755431 - g 81 -5.8 -5.05782 | gap 1, opp_overlap 755444 ATCGAGTGGAAAAAA CAAGAAGGTGAT-ACCGTC AAT GAAGGTGATATCCTTCTTG AAATCATGTCAGACA acoC 755359 - 756768 + | branched-chain alpha-keto acid dehydrogenase subunit E2 M5005_Spy_0754 757062 - 756823 - | hypothetical protein TERM 953 756924 - 756906 - G 75 -10.3 -3.25356 | overlap 756901 TGATAAGCAATTGAA TCCGAGC GAAAA GCTCGGA TAAAAATGGTAAGAG TERM 954 758144 - 758128 - g 79 -5.1 -5.09426 | overlap 758129 TTGAACTTCAAAAAA TCCTTTC TAA GAAAGGC ATGAAGATCAAAACA TERM 955 758143 - 758129 - g 73 -8.6 -3.64933 | overlap 758128 TGAACTTCAAAAAAT CCTTTC TAA GAAAGG CATGAAGATCAAAAC acoL 757095 - 758858 + | dihydrolipoamide dehydrogenase M5005_Spy_0756 759086 - 758874 - | hypothetical protein TERM 956 758978 - 758935 - G 72 -10.4 -2.58231 | opp_overlap 758937, overlap 758934 758946 758960 AGCACAACTATGAAC TGCACCCCAAACGTTAGA TATAAAAC CCTAACGTTTGGGGTGTT TTTGTATGACATTAA TERM 957 758937 - 758976 + g 100 -16.7 -4.98522 | opp_overlap 758935 758934 758946 758960 CACAACTATGAACTG CACCCCAAACGTTAG ATATAAAACC CTAACGTTTGGGGTG TTTTTGTATGACATT TERM 958 759044 - 759031 - G 76 -2.3 -5.42259 | opp_overlap 759031 TTAGCGCTAAAAAAA CCGAG AGAA CTCCG TTTGAAAGAAGCATC TERM 959 759098 - 759083 - G 83 -3.3 -5.55695 | GAAGAAGACAAAAAA CCATT ATAAAG AATGG ATAAAGACGAGTTCT TERM 960 759248 - 759204 - R 88 -7.3 -5.13722 | opp_overlap 759210, overlap 759205 759210 759232 CGTATCAAAATAAAA CGAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTACT TCAAATAGAGTAGCC TERM 961 759247 - 759205 - R 89 -10.8 -3.67149 | opp_overlap 759210, overlap 759204 759210 759232 GTATCAAAATAAAAC GAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTAC TTCAAATAGAGTAGC TERM 962 759242 - 759210 - R 100 -9.3 -4.83677 | opp_overlap 759210, overlap 759205 759204 759232 AAAATAAAACGAAAA GGACTTAGTCCTCTA CAA TACAGAACTAAATCC TTTACTTCAAATAGA hylA 761949 - 759532 - | hyaluronate lyase precursor TERM 963 762000 - 761987 - H 70 -3.9 -4.86822 | overlap 761996 AATGAGATAATAAAA GTAAA TTGA TTTAC TAAGTAAAAATATAC lplB 762182 - 763171 + | lipoate-protein ligase A TERM 964 763251 - 763219 - T 74 -5.7 -4.76171 | gap 1, opp_overlap 763239, overlap 763214 GAAAAAACTATAAAA CTCCTAAGC-GAAC TATCGT GTCCTACTTAGGAG TTTTTGTTTGATGAC M5005_Spy_0759 764071 - 763280 - | hypothetical protein M5005_Spy_0760 765414 - 764071 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 965 764199 - 764214 + g 75 -5.4 -4.7219 | TTTCTATGATTTGCT CGAGCT TTTC AGCTTG TTTTATCTTAGTATC TERM 966 766112 - 766136 + G 72 -8.7 -3.54935 | GCAGCCTGTGCTTAC TTGCCTTTG TCAGAAT CAAAGGCAA TTTCCAAAGAATTTG M5005_Spy_0761 765521 - 766372 + | hypothetical protein M5005_Spy_0762 766369 - 767325 + | hypothetical protein TERM 967 767615 - 767627 + G 70 -7.7 -3.63298 | overlap 767613 ACTTGGCGTTTTAGC GACAC CTG GTGTC TCTTATTTAGTTAGA TERM 968 767698 - 767652 - g 76 -4.5 -5.1523 | gap 1, overlap 767653 GTTAGAACAGAAAAA GCAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTGA CAATGGCATCAAATT TERM 969 767697 - 767653 - g 70 -8 -3.68053 | gap 1, overlap 767652 TTAGAACAGAAAAAG CAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTG ACAATGGCATCAAAT femD 767379 - 768734 + | phosphoglucosamine mutase TERM 970 768774 - 768753 - f 81 -8.1 -4.11183 | opp_overlap 768757, overlap 768757 GTTGAGTACAAACAA GAAACCTTA TTTC TAAGGCTTC TGTCAACAATTGGAA TERM 971 768770 - 768757 - f 71 -5.3 -4.63952 | opp_overlap 768757, overlap 768753 AGTACAAACAAGAAA CCTTA TTTC TAAGG CTTCTGTCAACAATT TERM 972 768785 - 768824 + F 78 -10.2 -2.69073 | opp_overlap 768791, overlap 768791 768821 GCTTCTGTCAACAAT TGGAAAGAGGCTTGGG GCGTTTAG CCCAAGTCTCTTTTTA TAAATTGTTATAAAT TERM 973 768818 - 768791 - f 70 -7 -3.72051 | opp_overlap 768791 768785 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTTATAAATTGTT TERM 974 768791 - 768818 + F 100 -9.2 -4.94222 | opp_overlap 768791, overlap 768785 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTTATAAATTGTT M5005_Spy_0764 768868 - 769509 + | hypothetical protein hemN 769506 - 770702 + | coproporphyrinogen III oxidase M5005_Spy_0766 770712 - 771464 + | acyl-acyl carrier protein thioesterase M5005_Spy_0767 771464 - 772228 + | 4-nitrophenylphosphatase M5005_Spy_0768 772228 - 772860 + | hypothetical protein TERM 975 772926 - 772896 - f 70 -8.4 -3.23708 | opp_overlap 772901, overlap 772901 TTTCCCTAAAAATGA TAAAACAAGCGTTT TGA AAGCGCTTGTTTTT TTGGTTTGCAGTCAG TERM 976 772901 - 772921 + F 100 -10.5 -5.72207 | opp_overlap 772901 772896 CTAAAAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTTGGTTTGCA TERM 977 772921 - 772901 - f 86 -8.3 -4.72556 | opp_overlap 772901, overlap 772896 CTAAAAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTTGGTTTGCA TERM 978 772980 - 772966 - f 100 -11.4 -5.58074 | opp_overlap 772965 772964 GAAGTATCAAAAAAA GCACCG ACT CGGTGC CACTTTTTCAAGTTG TERM 979 773638 - 773650 + G 74 -4.1 -5.14563 | opp_overlap 773616 ATAGTTTCTTTCATC GACTT GAA GAGTC TTTTTTGGTGGAAGA M5005_Spy_0769 773340 - 777446 + | putative cytoplasmic protein TERM 980 777549 - 777563 + G 70 -3.6 -4.89477 | CGGAGCTGATCCATT TATCAG AAA TTGATA TTTTGTTATTAGAAA TERM 981 777807 - 777822 + G 73 -7.6 -4.09685 | ATCAATCTTGCTATC TAGGAG CATG CTCCTA TTTTGAAAAATCCCA M5005_Spy_0770 777446 - 778315 + | putative cytoplasmic protein M5005_Spy_0771 778312 - 778653 + | putative cytoplasmic protein M5005_Spy_0772 778643 - 779305 + | hypothetical protein M5005_Spy_0773 779639 - 779352 - | hypothetical protein M5005_Spy_0774 779772 - 779951 + | nucleoside diphosphate kinase M5005_Spy_0775 780015 - 780161 + | nucleoside diphosphate kinase TERM 982 780238 - 780221 - f 83 -7.7 -4.65747 | opp_overlap 780221 780223 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 983 780221 - 780238 + F 84 -5.5 -5.58179 | opp_overlap 780221, overlap 780223 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 984 780411 - 780396 - g 72 -9 -3.40175 | overlap 780392 780394 ATTTTGGAAAAGACA GAGACG GTTT CGTCTC GTGAAATGCAGGCTC TERM 985 782063 - 782085 + G 83 -9.2 -3.9693 | overlap 782065 TGGTTCTGTCGAAGT CCCTCAAGAA GCC TTCTTGAGTG TTCTTTCAATGGATG TERM 986 782065 - 782083 + G 79 -10.4 -3.57185 | overlap 782063 GTTCTGTCGAAGTCC CTCAAGAA GCC TTCTTGAG TGTTCTTTCAATGGA lepA 780285 - 782117 + | GTP-binding protein LepA M5005_Spy_0777 782375 - 783256 + | collagen-like surface protein TERM 987 783317 - 783296 - f 87 -13.1 -2.82666 | opp_overlap 783296, overlap 783293 783292 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA TERM 988 783296 - 783317 + F 100 -13.1 -5.08824 | opp_overlap 783296 783293 783292 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA msrB 783442 - 783879 + | methionine sulfoxide reductase B TERM 989 784425 - 784453 + G 85 -5.4 -5.22289 | gap 1 CATTAAGGCAAAGGA TGAC-GAGGTTGC TAAG GCAATTTCAGTCA TTTTTCTCTTTAATA M5005_Spy_0779 783994 - 785013 + | hypothetical protein TERM 990 785024 - 785044 + F 100 -11.3 -5.80248 | opp_overlap 785024 785028 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 991 785044 - 785024 - f 83 -11.3 -2.73067 | opp_overlap 785024, overlap 785028 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 992 785180 - 785194 + F 71 -3.5 -5.1356 | TGAGATAAGCAATTA CCGTT TACTC AGCGG TTTTTGTTAATAGAG M5005_Spy_0780 785220 - 785645 + | PTS system mannose/fructose family IIA subunit TERM 993 785816 - 785806 - g 71 -6.8 -4.13304 | AAATGACGCTTAAAA TGGC TGT GCCA AACGGCATGAAACTG ptsB 785664 - 786155 + | PTS system mannose/fructose family IIB subunit ptsC 786172 - 786981 + | PTS system mannose/fructose family IIC subunit ptsD 786978 - 787805 + | PTS system mannose/fructose family IID subunit TERM 994 787857 - 787824 - f 93 -9.7 -4.24342 | opp_overlap 787824 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA TERM 995 787824 - 787857 + F 100 -14.1 -5.0925 | opp_overlap 787824 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA TERM 996 788313 - 788325 + G 74 -4.9 -4.76041 | opp_overlap 788309 788313 TTTGCTAGTAACCCA CATTT AGG AAATG TTTTTAGTAAATCTG M5005_Spy_0784 787941 - 789590 + | two-component sensor kinase TERM 997 790167 - 790154 - g 84 -6.7 -4.98616 | opp_overlap 790154 790153 TCAAAATATCAAAAA GCATC TTCA GATGC CTTTAAGTGATTACA M5005_Spy_0785 789594 - 790382 + | two-component response regulator M5005_Spy_0786 790376 - 791422 + | iron(III)-binding protein TERM 998 791456 - 791467 + F 79 -3.6 -5.48787 | opp_overlap 791456 791457, overlap 791450 791448 TGTCAACTTGAAAAA GGTC CTAA GGCC TTTTTTCTATGTTAT M5005_Spy_0787 791519 - 791866 + | hypothetical protein M5005_Spy_0788 792201 - 792767 + | acetyltransferase M5005_Spy_0789 792783 - 793472 + | HAD superfamily hydrolase gabD 793567 - 794964 + | succinate-semialdehyde dehydrogenase TERM 999 795536 - 795485 - g 81 -7 -4.77896 | gap 1, opp_overlap 795485 795484 795482, overlap 795486 TAATGAAGTTAAAAA GTTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAAG GTCTGTTTTTATTAC TERM 1000 795535 - 795486 - g 79 -10.5 -3.45653 | gap 1, opp_overlap 795485 795484 795482, overlap 795485 AATGAAGTTAAAAAG TTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAA GGTCTGTTTTTATTA uvrC 795066 - 796862 + | excinuclease ABC subunit C M5005_Spy_0792 797047 - 797649 + | NAD(P)H-dependent quinone reductase TERM 1001 797829 - 797819 - g 85 -5.4 -5.24449 | GACAAACGTAAAAAA GCTA TGC TAGC AGATTTAGTTGACCT M5005_Spy_0793 797774 - 799183 + | dipeptidase PepV TERM 1002 799204 - 799226 + T 100 -16.4 -4.51097 | opp_overlap 799204 TTATGACAGCAAAAA GAGCTGGAAC ACT GTTCCAGCTC TTTTGTGATGATTAG TERM 1003 799226 - 799204 - T 100 -16.4 -4.82667 | opp_overlap 799204 TTATGACAGCAAAAA GAGCTGGAAC ACT GTTCCAGCTC TTTTGTGATGATTAG trmE 800627 - 799251 - | tRNA modification GTPase TrmE TERM 1004 800001 - 800018 + g 73 -7.1 -4.12066 | opp_overlap 799999, overlap 799997 TGTTCGAAGGAGACT TTCCAAA AGGC TTTGGAA TTCTTGTGTTTTCTC TERM 1005 800822 - 800809 - H 70 -2.3 -5.24129 | GGTTTTGATAAAAAA CTGAC CTAA GACAG CAGGGGAGCATGCTC TERM 1006 800894 - 800915 + H 93 -3.7 -5.96219 | AACGTATTTGTACTT TCGTGTCTA GGTT TAGGTGCGA TTTTTTTTGTACCTA rplJ 800960 - 801460 + | 50S ribosomal protein L10 rplL 801525 - 801890 + | 50S ribosomal protein L7/L12 TERM 1007 802018 - 801993 - f 84 -8.3 -4.56597 | opp_overlap 801993 GTTTCTTGCCAAAAA TCCTGCCCAAA AAAT CTTTGGCAGGA TTTTTATTTTCTATA TERM 1008 801993 - 802018 + F 93 -7.6 -5.58522 | opp_overlap 801993 GTTTCTTGCCAAAAA TCCTGCCCAA AAAATC TTTGGCAGGA TTTTTATTTTCTATA TERM 1009 802099 - 802124 + F 93 -5.5 -6.09196 | opp_overlap 802102, overlap 802100 ATTTTTTTATGTGAA CGAGAACATTT TAAT AAGTGTTCTCA TTTTTTTATTTTCAG TERM 1010 802100 - 802123 + F 85 -9 -4.23077 | opp_overlap 802102, overlap 802099 TTTTTTTATGTGAAC GAGAACATTT TAAT AAGTGTTCTC ATTTTTTTATTTTCA M5005_Spy_0797 802286 - 802426 + | hypothetical protein M5005_Spy_0798 802420 - 802788 + | IFN-response binding factor 1 M5005_Spy_0799 802767 - 802904 + | hypothetical protein TERM 1011 802909 - 802933 + F 76 -4.3 -5.18371 | opp_overlap 802909 ATTATAGTTGAGTAA GGACGTTAC ATAAGCA GTAAGGTCC TTTTATTTTGTCAGA M5005_Spy_0800 802963 - 803286 + | DNA-cytosine methyltransferase M5005_Spy_0801 803344 - 803466 + | relaxase M5005_Spy_0802 803599 - 803811 + | relaxase srtI 804076 - 804771 + | protein involved in lantibiotic production srtR 804922 - 805608 + | nisin biosynthesis two-component response regulator TERM 1012 805688 - 805700 + G 86 -7.7 -4.86385 | ACTGTTTTAATGATT GCGAT AAT ATCGC TTTCTTTTTCAAAGT TERM 1013 806129 - 806109 - g 73 -5.5 -4.64861 | overlap 806105 GGTTTGTAAAAGAAA TTTCTTTGA ATT TCAAGGAAA TCAAGAAGTTAGCAA srtK 805601 - 806947 + | nisin biosynthesis sensor protein TERM 1014 806968 - 807007 + F 86 -5.2 -5.60993 | TTGATTGAAACTGGA GTATTTCAGGCAAAAAAT CGTA AATTTTTGGCTAAAATAC TTTTTTTCTGAACAA srtA 807095 - 807235 + | lantibiotic precursor TERM 1015 807298 - 807323 + F 75 -6.9 -4.258 | ATTTATAAATTTAGG GGAGTAGACTG ATTT TAGTTTGCTCC TTTATTAGTAGATAA srtT 807350 - 807967 + | ABC transporter (ATP binding)-lantibiotic associated TERM 1016 808088 - 808076 - g 90 -4.9 -5.61824 | opp_overlap 808079 CAAAATCTAAAAAAA TCTTA TGG TAAGA GAACCATATTGAATA srtF 808049 - 808738 + | lantibiotic transport ATP-binding protein TERM 1017 808979 - 808963 - g 76 -6.7 -4.41348 | opp_overlap 808944 GGTTTGTTAAATAAA TTAGAAT TAG ATTCTAA TAAGTATTCTGTTTT srtE 808744 - 809493 + | lantibiotic transport permease protein srtG 809496 - 810218 + | lantibiotic transport permease protein M5005_Spy_0811 810410 - 810628 + | Cro/CI family transcriptional regulator TERM 1018 810631 - 810678 + T 100 -10 -4.63048 | opp_overlap 810631 TCATAATAAATAAAA GTCTCGCCTTGATTTGTTCATT GACA ACTGAATAAACCGAGGTGGGAC TTTCTTGTTTGTCGA TERM 1019 810678 - 810631 - T 71 -3.4 -5.14682 | opp_overlap 810631 TCATAATAAATAAAA GTCTCGCCTTGATTTGTTCATT GACA ACTGAATAAACCGAGGTGGGAC TTTCTTGTTTGTCGA M5005_Spy_0812 810952 - 810737 - | hypothetical protein M5005_Spy_0813 811119 - 811250 + | integrase pseudogene M5005_Spy_0814 811272 - 811493 + | integrase pseudogene M5005_Spy_0815 811566 - 811787 + | integrase pseudogene M5005_Spy_0816 811818 - 812201 + | integrase pseudogene dacA1 812371 - 813699 + | D-alanyl-D-alanine carboxypeptidase TERM 1020 813768 - 813737 - T 100 -13.3 -5.73672 | opp_overlap 813737 AAACAATCAAAAAAA GACAGTTATGAAA GAATTT TTTCATAACTGTC TTTTTAGTTTACAGT TERM 1021 813737 - 813768 + T 100 -14 -4.99134 | opp_overlap 813737 AAACAATCAAAAAAA GACAGTTATGAAAG AATT TTTTCATAACTGTC TTTTTAGTTTACAGT M5005_Spy_0818 814778 - 813816 - | polysaccharide deacetylase TERM 1022 814594 - 814615 + g 71 -6 -4.21812 | GTTTCTTTTTTTGCC GTCTTTTT GTGATG AAAAAGAC TTATTTTAGGTACAA TERM 1023 814837 - 814851 + H 86 -2.8 -5.80727 | opp_overlap 814837, overlap 814829 TTTTAGAGAAAAGAA GGCT TGAAGTC AGCC TTTTTTCTTGTTTTT M5005_Spy_0819 814866 - 815021 + | hypothetical protein folC.1 815110 - 816387 + | folylpolyglutamate synthase/dihydrofolate synthase folE 816434 - 817000 + | GTP cyclohydrolase I folP 817009 - 817809 + | dihydropteroate synthase folQ 817816 - 818175 + | dihydroneopterin aldolase folK 818172 - 818672 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 1024 818662 - 818678 + F 75 -7.3 -4.12188 | opp_overlap 818662 818664 TTTCAGCTCAACAGA CAGAGTT CTA GACTCTG TTTTCGGAGTAATGC TERM 1025 818764 - 818778 + F 93 -7.1 -5.51402 | opp_overlap 818764 TTTGATATAATAGTA TCGGC TTTAT GCCGA TTTTTTTACGTGTAT murB 818822 - 819709 + | UDP-N-acetylenolpyruvoylglucosamine reductase potA 819755 - 820909 + | spermidine/putrescine transport system ATP-binding protein potB 820893 - 821687 + | spermidine/putrescine transport system permease protein potC 821684 - 822460 + | spermidine/putrescine transport system permease protein M5005_Spy_0829 822453 - 823526 + | spermidine/putrescine-binding protein TERM 1026 823531 - 823563 + T 73 -9.3 -2.87564 | opp_overlap 823530 823528 823538, overlap 823538 ATCGCAAATAAGCAC TCAAAAAGGCTGG TATTTCT CCAGCCTTTTTAA TGTATCGACAGATGA TERM 1027 823556 - 823538 - T 83 -7.4 -4.71382 | opp_overlap 823538 823531, overlap 823530 823528 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA TERM 1028 823538 - 823556 + T 88 -7.4 -4.84527 | opp_overlap 823530 823528 823538, overlap 823531 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA dpiA 824246 - 823581 - | transcriptional regulatory protein dpiB 825768 - 824227 - | sensor kinase TERM 1029 824281 - 824297 + g 71 -7.3 -3.95022 | opp_overlap 824281 TGTTGTCACTGAGAA CTGTAAC TCG GTTACGG TTTGATGTTGATGGA TERM 1030 825003 - 825027 + g 79 -10 -3.54459 | GGTAATTGAAACTGT TGCCAGTAGG TTTTC CCAACTGGCA TTTCCGAGCAATTAA TERM 1031 825216 - 825206 - G 89 -6.8 -5.26247 | CGAAAAGAAATAAAA CTGG TGA CCAG TAAACTAATAAGAAG TERM 1032 826990 - 826978 - g 70 -7.7 -3.6422 | opp_overlap 826966 826977, overlap 826976 TATCCCCTTAAAAGA GGTTG TGG CAACC CTTAGCTGGCAATAT malP 825929 - 827260 + | malate-sodium symport M5005_Spy_0833 827291 - 828457 + | NAD-dependent malic enzyme TERM 1033 828539 - 828493 - T 100 -19.3 -3.64371 | gap 1, opp_overlap 828493 828501, overlap 828501 AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1034 828493 - 828539 + T 100 -19.3 -3.12378 | gap 1, opp_overlap 828493 828501, overlap 828501 AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1035 828501 - 828531 + T 93 -9.3 -4.55491 | gap 1, opp_overlap 828493 828501, overlap 828493 CTTTAAATCACAAAA TAAGTAGAAGCATA TTTC TA-GCTTCTACTTA TTTTGTGATTAGCTA TERM 1036 828531 - 828501 - T 93 -9.3 -4.61566 | gap 1, opp_overlap 828501 828493, overlap 828493 CTTTAAATCACAAAA TAAGTAGAAGCATA TTTC TA-GCTTCTACTTA TTTTGTGATTAGCTA M5005_Spy_0834 829631 - 828540 - | Zn-dependent alcohol dehydrogenase and related dehydrogenase TERM 1037 829474 - 829486 + g 71 -4.8 -4.58395 | opp_overlap 829484 ATATGCAAATCAGTT CCAC AAATA GTGG TTTTTACCAACTGGA TERM 1038 830105 - 830120 + GH 71 -6.2 -4.15106 | CAGGCTCATTTGATT TTTTGC ATAA GCAAAA TTTTGGGACTTGGTC M5005_Spy_0835 829825 - 830187 + | class B acid phosphatase M5005_Spy_0836 830130 - 830555 + | acid phosphatase/phosphotransferase TERM 1039 830603 - 830630 + F 83 -6.2 -5.15969 | opp_overlap 830621 AATTTCTTTCATCAC CCCACTGAGTAA CCAA TAGCCCAGTGGG TTTTTTGGGTTACAG TERM 1040 831003 - 830991 - g 82 -7.7 -4.53303 | overlap 830995 GATTCTGATATAAAA GGATC AGG GATCC CCCATGTCGAAGGAG TERM 1041 831333 - 831343 + G 74 -4 -5.05113 | overlap 831329 GCGCTAGTGGCTAGC TTAG TGG CTAA TTTTATTTCTCTGAA TERM 1042 831724 - 831735 + G 89 -4.4 -5.54264 | overlap 831732 GTTATGGAAGTGGCT TACC TGGA GGTA TTTTTTTACCTATTT M5005_Spy_0837 830733 - 832265 + | chloride channel protein M5005_Spy_0838 832428 - 833042 + | lipase/acylhydrolase family protein M5005_Spy_0839 833222 - 834349 + | hypothetical protein TERM 1043 834338 - 834359 + F 89 -6.7 -5.626 | gap 1, opp_overlap 834338 GCTATTCAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA TERM 1044 834359 - 834338 - f 95 -6.7 -5.81412 | gap 1, opp_overlap 834338 GCTATTCAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA radC 834398 - 835078 + | DNA repair protein RadC M5005_Spy_0841 835775 - 835080 - | glutamine amidotransferase, class I M5005_Spy_0842 836429 - 835785 - | redox-sensing transcriptional repressor Rex TERM 1045 836551 - 836534 - R 88 -7.1 -5.1101 | GTATGAGTTAAAAAA GCTAAAA TTAG TTTTAGC ACTATATAATAGTAT M5005_Spy_0843 837028 - 836681 - | putative cytoplasmic protein nifS2 838145 - 837018 - | cysteine desulfhydrase TERM 1046 837684 - 837694 + g 71 -6.8 -4.0802 | opp_overlap 837684, overlap 837680 GTCCTTAATAGGTAA CAGG TCA CCTG TTTCGTTATTGGCAT M5005_Spy_0845 839122 - 838142 - | ribose-phosphate pyrophosphokinase TERM 1047 839219 - 839248 + r 81 -10.9 -2.75349 | opp_overlap 839221 839227, overlap 839216 839215 ACATCCCTATTTTAA CAGAAAAACAGAA AAAT TTCAGTTTTTCTG TCGCTTTTAGCCATT TERM 1048 839248 - 839227 - R 83 -6 -5.09762 | opp_overlap 839219 839216 839215, overlap 839221 ATTTTAACAGAAAAA CAGAAAAA TTTCAG TTTTTCTG TCGCTTTTAGCCATT M5005_Spy_0846 839840 - 839262 - | adenylate cyclase family protein TERM 1049 839594 - 839645 + g 73 -6.6 -4.21768 | opp_overlap 839584 TCATATCTTTTGCTT GTTCAAGAAAAAGAGGGACATTGT ACTC ACGATTCCCCACTTTTTCTGGCAC TTTTAGGGTTAATTC M5005_Spy_0847 839928 - 840599 + | GTP pyrophosphokinase ppnK 840574 - 841410 + | inorganic polyphosphate/ATP-NAD kinase M5005_Spy_0849 841407 - 842312 + | ribosomal large subunit pseudouridine synthase D pta 842316 - 842492 + | putative phosphotransacetylase TERM 1050 843000 - 843014 + G 73 -10 -2.76737 | overlap 842999 843002 CAACAGAAATTGCTA CAGGGT TGA ACCCTG ATTTGGCACTTGATG M5005_Spy_0851 842489 - 843310 + | phosphotransacetylase TERM 1051 843392 - 843412 + F 89 -6.8 -5.76949 | opp_overlap 843392 TGACATTATTAAAAA CGAGTTGG CCAGA CCATCTCG TTTTTTTTGAAGGTG TERM 1052 843412 - 843392 - f 83 -7.5 -4.79223 | opp_overlap 843392 TGACATTATTAAAAA CGAGTTGGC CAG ACCATCTCG TTTTTTTTGAAGGTG M5005_Spy_0852 843437 - 844054 + | short chain dehydrogenase M5005_Spy_0853 844051 - 844209 + | short chain dehydrogenase M5005_Spy_0854 845092 - 844403 - | Na+ driven multidrug efflux pump TERM 1053 844438 - 844464 + g 78 -7.3 -4.33819 | gap 1, opp_overlap 844422 844417, overlap 844438 844439 844461 GGCCTGATGTGACAT C-GGACCAGCCA ACAA TGGCTTGTCCAG TTTCTTCTAAATACT TERM 1054 844439 - 844462 + g 76 -11 -2.51259 | opp_overlap 844422 844417, overlap 844438 844438 844461 GCCTGATGTGACATC GGACCAGCCA ACAA TGGCTTGTCC AGTTTCTTCTAAATA proV 845512 - 846240 + | glycine betaine transport ATP-binding protein M5005_Spy_0856 846233 - 847759 + | glycine betaine transport system permease protein TERM 1055 847767 - 847787 + F 84 -6.1 -5.27399 | AGAAATAAACAGAAA TGTTGGTCC GTA GGACTGGCA TTTTTTCGTCTCTTA guaC 848037 - 849020 + | guanosine 5'-monophosphate oxidoreductase xpt 849325 - 849906 + | xanthine phosphoribosyltransferase TERM 1056 850606 - 850635 + G 71 -6.5 -4.13872 | CTTTTGAAATCACTT CTATTGTGATGAT GTGT ATCATCGCAACGG TTTCTATGGTTGAAT M5005_Spy_0859 849906 - 851189 + | xanthine permease TERM 1057 851198 - 851212 + T 93 -7.1 -5.39721 | opp_overlap 851198 851191, overlap 851191 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA TERM 1058 851212 - 851198 - T 89 -7.1 -5.37865 | opp_overlap 851191 851198, overlap 851191 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA apbE 852191 - 851253 - | thiamine biosynthesis lipoprotein TERM 1059 851618 - 851646 + g 72 -9.7 -3.07816 | overlap 851604 GTTTTTGAATGCCAA TTCGAAAAGTCTT GTC AGGGCTTTTCGGA TTAGGTCCATGAACG TERM 1060 852238 - 852215 - R 87 -11 -3.40403 | opp_overlap 852213 852212, overlap 852217 CTCTTTTTAGCAGAA TACCCCCACT AAGG AGTGGGGGAA GGTCATTATGATTTT TERM 1061 852236 - 852217 - R 93 -13.6 -3.27475 | opp_overlap 852213 852212, overlap 852215 CTTTTTAGCAGAATA CCCCCACT AAGG AGTGGGGG AAGGTCATTATGATT M5005_Spy_0861 852429 - 852244 - | 4-oxalocrotonate tautomerase tdk2 852567 - 853136 + | thymidine kinase TERM 1062 853538 - 853552 + G 75 -5.6 -4.78107 | GTGGTGCTGCTGGTG GCGATG AAG CAGCGC TTTTTGCTGGTGATC prfA 853171 - 854250 + | peptide chain release factor 1 hemK 854250 - 855089 + | peptide release factor-glutamine N5-methyltransferase M5005_Spy_0865 855073 - 855663 + | SUA5 protein M5005_Spy_0866 855681 - 856133 + | phosphinothricin N-acetyltransferase TERM 1063 857003 - 857020 + G 79 -6.9 -4.57073 | opp_overlap 857003 857001 CTATTATTGATAATA CTGCGGC TATG GCAGCAG TTTTTGCACAAGATG glyA 856123 - 857379 + | serine hydroxymethyltransferase M5005_Spy_0868 857386 - 858363 + | hypothetical protein M5005_Spy_0869 858364 - 858963 + | antigen TERM 1064 859281 - 859295 + G 72 -8.6 -3.46965 | opp_overlap 859278 859275 TTTGAGCAAGGAGGA CCAAGA CCA TCTTGG TTATGCTAGTCTGTT M5005_Spy_0870 858973 - 860697 + | multidrug resistance ABC transporter ATP-binding and permease protein TERM 1065 860716 - 860737 + G 76 -7.3 -4.15044 | opp_overlap 860708 AAACAGATCATCACC TCCTAAAGC GAGT GCTTCAGGA TTTGTTAAAAAAACC TERM 1066 861867 - 861887 + G 84 -12.7 -3.08173 | opp_overlap 861867, overlap 861858 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT TERM 1067 861887 - 861867 - g 85 -12.7 -3.14211 | opp_overlap 861858 861867 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT TERM 1068 862188 - 862176 - g 74 -4.1 -5.00884 | opp_overlap 862176, overlap 862162 ATGTTTTTGAAAAAA CCAAA AGT CTTGG TTCTAGATGAAGCCA M5005_Spy_0871 860694 - 862421 + | multidrug resistance ABC transporter ATP-binding and permease protein nox 862962 - 864032 + | NADH oxidase H2O-forming TERM 1069 864073 - 864049 - T 83 -7 -4.80882 | opp_overlap 864049 ATCTGATAGGAAAAA GCCAGAGCAG TTCAG CAGCACTGGC TTTTTTGCTTTTTAA TERM 1070 864049 - 864073 + T 93 -7.7 -5.54079 | opp_overlap 864049 ATCTGATAGGAAAAA GCCAGAGCAGT TCA GCAGCACTGGC TTTTTTGCTTTTTAA TERM 1071 864189 - 864163 - T 78 -7.5 -4.23723 | gap 1, opp_overlap 864163 864164 864169, overlap 864169 GAATATCAGGCAAAA CA-AAAAGAGAC CGAA GTCTCTTTTGTG ATTAGTTTTTAGCAG TERM 1072 864182 - 864169 - T 87 -6.7 -5.48213 | opp_overlap 864164 864163 864169, overlap 864163 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT TERM 1073 864169 - 864182 + T 76 -6.7 -4.59117 | opp_overlap 864169 864163, overlap 864164 864163 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT ldh 865174 - 864191 - | L-lactate dehydrogenase TERM 1074 864260 - 864273 + g 79 -3.1 -5.37345 | AGCTTTCAATTGATT TGCAG AGGC TTGCA TTTTTTGTAATTCAG gyrA 865365 - 867851 + | DNA gyrase subunit A TERM 1075 868412 - 868394 - g 85 -2.5 -5.76237 | opp_overlap 868404, overlap 868398 868404 CAGATAAAGAAAAAA TTTACGA ATACA TCATAAA AGATGTTTTCACGGT M5005_Spy_0875 867871 - 868620 + | sortase M5005_Spy_0876 868700 - 869116 + | lactoylglutathione lyase TERM 1076 869395 - 869414 + F 76 -6.6 -4.48175 | CGTATTAATGTTTTT TTATCTAT TGCG ATAGATAA TTTTACTTCAATTTT TERM 1077 869704 - 869685 - g 79 -3.6 -5.41746 | AACTTGCTAAAAAAA TGTTTAAC GATA GTAAAACA CCGTCTAAAAGAAAG M5005_Spy_0877 869603 - 869722 + | hypothetical protein M5005_Spy_0878 869730 - 870098 + | hypothetical protein TERM 1078 870149 - 870124 - T 79 -9.1 -3.41292 | opp_overlap 870130, overlap 870130 ACCTTTAAGATAAGA CAAAAAGTGCC ATTA GGCACTTTTTT AATCTTCTGTTGGAA TERM 1079 870130 - 870143 + T 90 -8.1 -5.30189 | opp_overlap 870130 870124 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG TERM 1080 870143 - 870130 - T 90 -8.1 -5.18995 | opp_overlap 870130, overlap 870124 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG M5005_Spy_0879 871059 - 870148 - | hypothetical protein TERM 1081 871131 - 871115 - R 73 -8.1 -3.63991 | TACCACTTCTAAGAA TTGATGT CTT ACATCAA ATCATCACATTAAGC M5005_Spy_0880 871826 - 871176 - | hypothetical protein TERM 1082 871754 - 871770 + g 77 -8.7 -3.85704 | overlap 871756 TAGCAAATGCTCCGA TAGCGTG TGT CACGCTG TTTGCTACTTCCTCA TERM 1083 871756 - 871768 + g 74 -9.1 -3.51124 | overlap 871754 GCAAATGCTCCGATA GCGTG TGT CACGC TGTTTGCTACTTCCT M5005_Spy_0881 872263 - 871823 - | putative cytoplasmic protein rbgA 872482 - 873330 + | ribosomal biogenesis GTPase rnhB 873320 - 874111 + | ribonuclease HII TERM 1084 874116 - 874132 + F 95 -5.9 -6.28401 | opp_overlap 874116 CTAATCCTTAAAAAG TTCTGTT TTT AGCAGAA TTTTTTTCTTTTTTA smf 874176 - 875012 + | hypothetical protein TERM 1085 875408 - 875395 - g 76 -2.3 -5.41746 | overlap 875382 AATTCTTTAAAAAAA GAAGC CAAA GCTGC TAAAAAAGTTTATTT TERM 1086 875919 - 875893 - g 76 -11 -2.64454 | overlap 875892 875890 CTAACAAATGAAGAT TTTCTTGTCAGC AAG GTTGACAAGAAA GAGCGACGTCGTAAT M5005_Spy_0885 875119 - 877248 + | DNA topoisomerase I TERM 1087 877254 - 877283 + T 95 -6.6 -5.95539 | opp_overlap 877254 AATTAAATAAAAAAA GAATTGGAAC TCCTTGTCTT GTTCCAATTC TTTTTTTATTTACAA TERM 1088 877283 - 877254 - T 100 -6.6 -6.01187 | opp_overlap 877254 AATTAAATAAAAAAA GAATTGGAAC TCCTTGTCTT GTTCCAATTC TTTTTTTATTTACAA M5005_Spy_0886 877805 - 877323 - | LysR family transcriptional regulator M5005_Spy_0887 877934 - 877812 - | LysR family transcriptional regulator M5005_Spy_0888 878205 - 878080 - | LysR family transcriptional regulator M5005_Spy_0889 878218 - 878763 + | regulatory protein (pfoS/R) ddh 878778 - 879770 + | D-lactate dehydrogenase TERM 1089 879784 - 879827 + F 100 -14.3 -5.49569 | opp_overlap 879796, overlap 879796 AACAACTGATTTGAC GTCCATTATAAAGGAAT AATTCTAAAA ATTCCTTTATAATGGAC TTTTTTGTATTAGTC satD 879875 - 880540 + | hypothetical protein satE 880533 - 881249 + | hypothetical protein TERM 1090 881268 - 881294 + F 100 -15.4 -5.52807 | opp_overlap 881272 AAAAGGGTTCCCGTA GAAAGAGACTAA CGC TTAGTCTCTTTC TTTTTCTTTCTTCTT TERM 1091 881290 - 881272 - f 87 -10.4 -3.85698 | opp_overlap 881268 GGGTTCCCGTAGAAA GAGACTAA CGC TTAGTCTC TTTCTTTTTCTTTCT TERM 1092 882023 - 882006 - g 79 -8.5 -4.13206 | ATGACCAAAGAAGAA TTCATGG CTTT CCATGAA GCTCTGACAACCGCA gid 881400 - 882746 + | tRNA (uracil-5-)-methyltransferase Gid TERM 1093 882760 - 882789 + F 76 -3.6 -5.30155 | opp_overlap 882749, overlap 882761 AACACTAAAAAAGAG TTCCTTTTCAGT TGAGTT GCTGAAGAGGAC TTTTTTACTTGCTGA TERM 1094 882761 - 882788 + F 70 -7.1 -3.77008 | opp_overlap 882749, overlap 882760 ACACTAAAAAAGAGT TCCTTTTCAGT TGAGTT GCTGAAGAGGA CTTTTTTACTTGCTG oadA2 882899 - 884305 + | oxaloacetate decarboxylase M5005_Spy_0895 884348 - 884662 + | hypothetical protein TERM 1095 884810 - 884780 - g 100 -14.1 -4.57482 | CTACTGAGAAAGAAA TGAATGCCAACGC TGCTG GCGGTGGCATTCA GGTAAAGGCTCCAAT M5005_Spy_0896 884662 - 885012 + | biotin carboxyl carrier protein of oxaloacetate decarboxylase M5005_Spy_0897 885022 - 886152 + | oxaloacetate decarboxylase beta chain TERM 1096 886197 - 886219 + T 84 -6.3 -5.14563 | AATAAATCATTATCA GGAGTTGGA AGCAA TCTAGCTCC TTTTTTAGTAGAAAG M5005_Spy_0898 887236 - 886352 - | 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase citG 887924 - 887229 - | GntR family transcriptional regulator TERM 1097 887877 - 887892 + g 82 -6.2 -4.87133 | TTTCAAAGGGATATT TCTTGA TAGG TCAAGA TTTTGTTTAACGGCT TERM 1098 888042 - 888009 - R 71 -5.4 -4.58663 | opp_overlap 888009 ATGAGTTCTGAAAAA TTAAAGCCATGCTC ACAAAA GGACATGACTTTAA TCATCTCATAAGGAA M5005_Spy_0900 889488 - 888082 - | Mg2+/citrate complex secondary transporter TERM 1099 889695 - 889744 + H 90 -11.1 -3.87869 | AGTATCTTGATCTCA GTTTTTCAACAGTTACCTA AAAATAAAATAA AAGGTAACTGTTGAAAAAC TTTATGAAACATTGA M5005_Spy_0901 889865 - 890188 + | hypothetical protein M5005_Spy_0902 890242 - 890640 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit oadB 890685 - 891806 + | oxaloacetate decarboxylase beta chain M5005_Spy_0904 891824 - 891958 + | hypothetical protein citD 891994 - 892302 + | citrate lyase subunit gamma TERM 1100 893023 - 893011 - g 78 -4.1 -5.33131 | CAACAAAAAAAGAAA TTGAC CAT GCCAA ACAAGTCATCTGGGC TERM 1101 893105 - 893092 - g 74 -5.3 -4.81249 | CCTTAAATGGAAAAA TGGTT GATA AACCA ATCGTTGAACGTGCA citE 892320 - 893177 + | citrate lyase beta chain/citryl-CoA lyase subunit TERM 1102 894504 - 894486 - gf 73 -7.4 -3.76482 | TTACACCAGGAACAA GTGTCGAT GTG ATCGTCAC AGAAGTGGGAATTGC citF 893180 - 894712 + | citrate lyase alpha chain/citrate CoA-transferase citX 894642 - 895283 + | 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase TERM 1103 895320 - 895308 - g 80 -7.7 -4.33105 | overlap 895310 CAATTATGACGAAAA TCCGT ATA ACGGA AACAGTTTTACGTGA oadA1 895298 - 896692 + | oxaloacetate decarboxylase TERM 1104 896792 - 896766 - T 100 -10.3 -4.93316 | opp_overlap 896766 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTATCTTAGTA TERM 1105 896766 - 896792 + T 93 -8.1 -5.49569 | opp_overlap 896766 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTATCTTAGTA citC 897854 - 896802 - | (citrate [pro-3S]-lyase)-ligase M5005_Spy_0911 898425 - 897943 - | hypothetical protein M5005_Spy_0912 898910 - 899014 + | hypothetical protein TERM 1106 899092 - 899131 + T 93 -13.3 -3.49668 | overlap 899093 TTGAAGCTATTTTTA TCTTTAATGTTACATAA AAACAA TTATGTAACATTAAAGG TTATCTAAAGCATTT TERM 1107 899093 - 899130 + T 95 -14.6 -2.69319 | overlap 899092 TGAAGCTATTTTTAT CTTTAATGTTACATAA AAACAA TTATGTAACATTAAAG GTTATCTAAAGCATT xerS 900039 - 899125 - | site-specific tyrosine recombinase XerS TERM 1108 899640 - 899600 - G 74 -9.2 -3.47383 | gap 1, overlap 899598 AGTAGAGCAATAATA GCCAAATC-CCTCTCCTTA TTTT TACGGAAAGAAGATTTGGC ACGATTAGACAATTT TERM 1109 899736 - 899750 + g 91 -7.8 -5.29208 | overlap 899741 GCTTAATATTTTCCG CTCTGG AAG CCAGGG TTTCTTTTTTCTTTT TERM 1110 899741 - 899754 + g 100 -3.1 -6.07374 | overlap 899736 ATATTTTCCGCTCTG GAAGC CAGG GTTTC TTTTTTCTTTTTTGT TERM 1111 900347 - 900358 + H 76 -4.4 -5.03715 | TCGGAAAGATGTTAC GAGA CAGA TCTC TTTTTTACAGATACT TERM 1112 900650 - 900627 - H 75 -9.8 -2.62263 | overlap 900642 ATTTTTTTGATACTA TTAGTAAAGT TATA ACTTTACTAA AGGAGCTACCAAATG M5005_Spy_0914 900733 - 901362 + | phage transcriptional repressor TERM 1113 901452 - 901481 + T 100 -10.9 -4.9251 | opp_overlap 901457, overlap 901457 AATGAATTTCACATC AAAAAGAGACGAA AATT TTCGTCTCTTTTA TTTTCGTTTTTTCTT TERM 1114 901476 - 901457 - T 100 -10.8 -4.80882 | opp_overlap 901452 901457 ATTTCACATCAAAAA GAGACGAA AATT TTCGTCTC TTTTATTTTCGTTTT TERM 1115 901457 - 901476 + T 100 -10.8 -5.24291 | opp_overlap 901457, overlap 901452 ATTTCACATCAAAAA GAGACGAA AATT TTCGTCTC TTTTATTTTCGTTTT ffh 903041 - 901479 - | signal recognition particle, subunit FFH/SRP54 ylxM 903397 - 903056 - | hypothetical protein TERM 1116 903482 - 903463 - R 75 -5 -5.00616 | opp_overlap 903464 903467, overlap 903464 TGTTCGTGTAAAAAA GGAAGTCA TAAA TGACTTCT TTACTAATTATTTTC TERM 1117 903481 - 903464 - R 77 -8.5 -3.60048 | opp_overlap 903464 903467, overlap 903463 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT TERM 1118 903464 - 903481 + r 82 -8.5 -3.91642 | opp_overlap 903463 903464, overlap 903467 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT M5005_Spy_0917 904184 - 903486 - | GntR family transcriptional regulator M5005_Spy_0918 905700 - 904267 - | hypothetical protein TERM 1119 904679 - 904690 + g 72 -4.4 -4.83169 | AATTCTGGCGCATAG CCAA TAAA TTGG TTTTTCTCAAACAAT TERM 1120 905086 - 905072 - G 70 -8.6 -3.28712 | opp_overlap 905061, overlap 905079 TGCTGCTTTGCATAA GCGAAA GCT TTTCGC AAAAGACGATTGTTT guaA 905867 - 907429 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1121 907485 - 907430 - T 100 -23.2 -3.68222 | gap 1, opp_overlap 907432 907435 907439, overlap 907432 907435 907439 907447 GTTGAATGGGAATAA CAGAATAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTATTCTT TAACTGTTTTCGTAT TERM 1122 907483 - 907432 - T 100 -25.8 -3.42069 | gap 1, opp_overlap 907432 907435 907439, overlap 907430 907435 907439 907447 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1123 907432 - 907483 + T 100 -25.8 -3.85786 | gap 1, opp_overlap 907430 907432 907435 907439 907447, overlap 907435 907439 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1124 907480 - 907435 - T 100 -21.7 -3.8372 | gap 1, opp_overlap 907435 907432 907439, overlap 907432 907430 907439 907447 ATGGGAATAACAGAA TAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1125 907435 - 907480 + T 100 -21.7 -4.03611 | gap 1, opp_overlap 907432 907430 907435 907439 907447, overlap 907432 907439 ATGGGAATAACAGAA TAAACATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1126 907439 - 907476 + T 100 -18.1 -4.58585 | gap 1, opp_overlap 907435 907432 907430 907439 907447, overlap 907435 907432 GAATAACAGAATAAA CATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1127 907476 - 907439 - T 100 -18.1 -4.51763 | gap 1, opp_overlap 907439 907435 907432, overlap 907435 907432 907430 907447 GAATAACAGAATAAA CATTAAAAGACTCGC-CA AAA TGAGCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1128 907468 - 907447 - T 93 -9.5 -4.55446 | gap 1, opp_overlap 907439 907435 907432, overlap 907439 907435 907432 907430 GAATAAACATTAAAA GACTCGC-CA AAA TGAGCGAGTC TTTTAATGTTTATTC M5005_Spy_0920 908694 - 907471 - | UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase TERM 1129 908953 - 908940 - R 93 -5.3 -6.0427 | opp_overlap 908933 908940 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA TERM 1130 908940 - 908953 + r 82 -5.3 -5.30155 | opp_overlap 908940, overlap 908933 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA M5005_Spy_0921 910603 - 909059 - | ABC transporter ATP-binding protein TERM 1131 910645 - 910632 - R 90 -8.1 -5.14965 | opp_overlap 910632 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA TERM 1132 910632 - 910645 + r 81 -8.1 -4.17537 | opp_overlap 910632 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA pdxK 911294 - 910737 - | hypothetical protein M5005_Spy_0923 912138 - 911272 - | pyridoxamine kinase TERM 1133 912594 - 912606 + G 73 -7.7 -3.93288 | opp_overlap 912593 CTAGAAGAACTAAGG GAAGC TTT GCTTC TTTACTTAGCTGAAA TERM 1134 913113 - 913129 + G 71 -3.7 -5.00616 | overlap 913116 GCTCTAGTTTTACCG TCAGGTT TAA AACCTCA TTTTTTAACCCAAAA M5005_Spy_0924 912228 - 913496 + | GntR family transcriptional regulator TERM 1135 913818 - 913845 + T 100 -14.4 -3.62591 | opp_overlap 913818 ATAGTAGCAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC TERM 1136 913845 - 913818 - T 100 -14.4 -5.56568 | opp_overlap 913818 ATAGTAGCAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC rnhB 914250 - 913894 - | anaerobic ribonucleoside-triphosphate reductase TERM 1137 914418 - 914398 - R 100 -12.7 -5.81622 | ATAAAATTAAAAAAA GGATTGAGA ATA TCTCAATCC AAGGGGCATTCTTAA TERM 1138 914527 - 914512 - R 76 -7.6 -4.07568 | CTCCCCTGCGCAAAA GTGACT TTGC AGTCAC AATCGACTCATCGCA M5005_Spy_0926 916149 - 914572 - | cardiolipin synthetase TERM 1139 916207 - 916227 + r 100 -12.7 -4.72272 | opp_overlap 916201 916200 GGAAGAAAGGAGCGC TTGCTCGAA TTA TTCGAGCAA TTTTTCCTAAAAGAG fhs.1 917904 - 916234 - | formate--tetrahydrofolate ligase lplA 919051 - 918032 - | lipoate-protein ligase A TERM 1140 918602 - 918592 - G 73 -6.8 -4.29738 | CCACATCTAGCAAAA GGGA ATA TCCC CCATAAACACGGCCA M5005_Spy_0929 919979 - 919098 - | SIR2 family protein TERM 1141 919601 - 919583 - G 72 -4.6 -4.66833 | overlap 919584 CTTGAATGTGAAAAA TGTTATGA GGA TCATAACC AGCCACCCAAAAAGC M5005_Spy_0930 920784 - 919972 - | hypothetical protein M5005_Spy_0931 921109 - 920777 - | glycine cleavage system H protein M5005_Spy_0932 922149 - 921151 - | luciferase-like monooxygenase M5005_Spy_0933 923345 - 922146 - | NADH-dependent flavin oxidoreductase M5005_Spy_0934 924178 - 923342 - | lipoate-protein ligase A TERM 1142 924331 - 924313 - H 85 -8.8 -4.2586 | opp_overlap 924313 924310 924313, overlap 924318 CCATATTAATACAAA CGCAAGAC AAT GTCTGGCG TCATTATCTTCCGTT TERM 1143 924758 - 924776 + G 82 -3.8 -5.40072 | overlap 924761 924762 CCGAAAATCTCATCT GCATCTGA TTA TCAGGTTC TTTTTTTGAAAAAAA dpfB 924374 - 925066 + | phosphopantothenate--cysteine ligase dfp 925059 - 925604 + | phosphopantothenoylcysteine decarboxylase TERM 1144 926077 - 926087 + G 78 -4 -5.20328 | ATACTATATTTGTAT TATC TGG GATA TTTATTTTTTTCGCG M5005_Spy_0937 925662 - 926231 + | transporter TERM 1145 926245 - 926277 + F 89 -8.7 -4.42851 | opp_overlap 926245 926248, overlap 926274 AATTAGCTTTCACAA TAACCGAGTTTTT CTCTTTT AAAAACTTGGTTA TTTTAACTTTCTTAC TERM 1146 927613 - 927586 - g 70 -2.7 -5.07486 | opp_overlap 927610 GAGTTTGAAGAAAAA CATAACCACAC CTATAT GTTTGGTTTTG AAGAAAGCTTCGGAT pgmA 926407 - 928125 + | phosphoglucomutase/phosphomannomutase TERM 1147 928205 - 928157 - T 82 -5.6 -5.3104 | gap 2, opp_overlap 928169, overlap 928169 TCAGTAAAAACAAAA GACAAG-C-AAAAAGAACTAAGCC GCT GACTTAGTTCTTTTTAGTCTATTC TTGCTTCTATTGTGA TERM 1148 928191 - 928169 - T 100 -11.4 -5.00412 | opp_overlap 928169, overlap 928157 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1149 928169 - 928191 + T 100 -9.2 -4.88711 | opp_overlap 928169 928157 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1150 928302 - 928261 - T 95 -8.8 -5.055 | opp_overlap 928261 GTAAGTCCCAAAAAA GCACCCTTAAAGCTAGAC CTAACT ATCTTGCTTTAGGAGTGC TGTTAAACCTCACTA M5005_Spy_0939 929294 - 928338 - | nucleoside transport system permease protein TERM 1151 928876 - 928850 - G 70 -3.1 -4.87803 | overlap 928859 TATTTTTAAAGAAAA TATCACCAATC ACAGG AATTTGTGATA AACCTGGGAAATCAA M5005_Spy_0940 930360 - 929296 - | nucleoside transport system permease protein TERM 1152 930192 - 930177 - G 71 -6.2 -4.2679 | CAAGCGCTATTAAAA TCAATG GCCC CATTGA ACGGAATATTTCTCC M5005_Spy_0941 931903 - 930353 - | nucleoside transport ATP-binding protein TERM 1153 931957 - 931977 + r 90 -11.3 -3.53012 | opp_overlap 931953 931952, overlap 931911 CTATCACAAACTTTA CTGAGATAA AAA TTATCTCAG TTTAAAAAGAGCGAC TERM 1154 931986 - 932007 + r 75 -7.2 -4.09963 | opp_overlap 931986 931988 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1155 932007 - 931986 - R 80 -7.2 -4.62336 | opp_overlap 931986, overlap 931988 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1156 932005 - 931988 - R 79 -8.4 -3.92746 | opp_overlap 931986, overlap 931986 CTCAGTTTAAAAAGA GCGACC GACAAA GGTCGC GCTTCTTGTTCTTAA M5005_Spy_0942 933076 - 932024 - | nucleoside-binding protein TERM 1157 932158 - 932170 + g 82 -4.1 -5.39721 | CATAGACAGTTGTTT TTCCT CCA GGGAA TTTTTTATCTGCTAC cdd 933559 - 933170 - | cytidine deaminase TERM 1158 934221 - 934173 - R 85 -12.1 -3.09516 | opp_overlap 934173 934178, overlap 934178 CTCTTTACTATTTAA GCAAACCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGGCTTAC TTTATACTTCTTAAT TERM 1159 934173 - 934221 + r 93 -9.9 -4.14859 | opp_overlap 934173 934178, overlap 934178 CTCTTTACTATTTAA GCAAACCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGGCTTAC TTTATACTTCTTAAT TERM 1160 934178 - 934216 + r 86 -12.8 -2.78526 | opp_overlap 934178 934173, overlap 934173 TACTATTTAAGCAAA CCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGG CTTACTTTATACTTC TERM 1161 934216 - 934178 - R 93 -10.6 -3.94002 | opp_overlap 934173 934178, overlap 934173 TACTATTTAAGCAAA CCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGG CTTACTTTATACTTC M5005_Spy_0944 934805 - 934218 - | 16S rRNA m(2)G 1207 methyltransferase TERM 1162 934306 - 934319 + g 84 -2.3 -5.81412 | overlap 934303 ATTTTTGCTTTAGCG CTAGG AGCT CCTTG TTTTTTTTGAATCAC TERM 1163 934863 - 934873 + H 79 -5.4 -5.08011 | overlap 934871 CTTTGAAATGGTTTA CAAG ACG CTTG TTTTTTAACAATTTT coaA 935073 - 935993 + | pantothenate kinase TERM 1164 936279 - 936254 - g 84 -6.8 -4.97405 | overlap 936269 936270 ATTCACAAAAACAAA GCAAGCCGCG ATAAAG CACGCCTTGC TGCAAAACTTGGCTA rpsT 936062 - 936295 + | 30S ribosomal protein S20 TERM 1165 936324 - 936313 - T 72 -5.8 -4.45151 | opp_overlap 936313 AATATCCAATGAAAA CTCC AGCT GGAG TTTTTTTATACGGTA TERM 1166 936313 - 936324 + T 88 -5.8 -5.626 | opp_overlap 936313 AATATCCAATGAAAA CTCC AGCT GGAG TTTTTTTATACGGTA TERM 1167 936422 - 936379 - T 72 -4.7 -4.70659 | gap 1, opp_overlap 936371 936390, overlap 936382 936384 936390 GTTGACAGTTAAAAA TAACTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTTAGCTTA TAGTTTGACTTCAAA TERM 1168 936418 - 936382 - T 71 -5.3 -4.46215 | gap 2, opp_overlap 936390, overlap 936379 936384 936390 GACAGTTAAAAATAA CTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTT-AG CTTATAGTTTGACTT TERM 1169 936390 - 936411 + T 86 -8 -4.78752 | gap 1, opp_overlap 936390 936384 936382 936379 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAGT TERM 1170 936411 - 936390 - T 81 -8 -4.26634 | gap 1, opp_overlap 936390, overlap 936384 936382 936379 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAGT ciaH 937730 - 936420 - | sensor protein ciaR 938397 - 937723 - | transcriptional regulatory protein TERM 1171 938729 - 938708 - R 80 -5.1 -5.31275 | GCTCACTACAAAAAA GAGCTGGAA AGTC CCCCAACTC TTTTGCTTATGGTCT pepN 941280 - 938743 - | lysyl aminopeptidase/alanine aminopeptidase TERM 1172 939915 - 939895 - G 89 -5.5 -5.4505 | opp_overlap 939895 TTTTCCAATAAAAAA TTGTTTTTG ACT CAAAATCAA TTGATCGTTTTCAAG TERM 1173 941341 - 941322 - R 77 -9.4 -3.26546 | opp_overlap 941322 941324, overlap 941320 941312 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT TERM 1174 941322 - 941341 + r 74 -9.4 -3.0218 | opp_overlap 941322 941320 941312, overlap 941324 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT TERM 1175 941449 - 941439 - R 74 -6.8 -4.386 | opp_overlap 941441 941442 941444, overlap 941442 CAATTTCGTATAAAA CCAG GGA CTGG CAAGCTGTTTCCCAG phoU 942138 - 941485 - | phosphate transport system protein pstB 942964 - 942206 - | phosphate transport ATP-binding protein pstB2 943780 - 942977 - | phosphate transport ATP-binding protein pstA 944683 - 943796 - | phosphate transport system permease protein pstC 945491 - 944673 - | phosphate transport system permease protein TERM 1176 945288 - 945278 - G 74 -4.6 -4.87665 | TTTCAGTCATAAAAA CGGC TGC GCCA ATGGCAAATGGGGTG pstS 946484 - 945618 - | phosphate-binding protein TERM 1177 946568 - 946580 + r 89 -6.3 -5.65927 | TAACATATCTACCTA TGCTT TGA AAGCA TTTTTTCTTTAAATA M5005_Spy_0956 947933 - 946623 - | 16S rRNA m(5)C 967 methyltransferase TERM 1178 947671 - 947650 - G 80 -10.1 -3.69618 | opp_overlap 947649, overlap 947648 GCCAAGTCTAAAACA CGACTCCCC TTTT GAGGAGCCG CTACTTGTGCCACCA M5005_Spy_0957 948724 - 947936 - | myo-inositol-1(or 4)-monophosphatase M5005_Spy_0958 948992 - 948714 - | hypothetical protein TERM 1179 948956 - 948925 - G 100 -12.4 -5.09225 | opp_overlap 948923 ACTTTATTCAAAAAA TGAAGCACTGAGGA TATT TCTTCAGTGCTCCA ACTTAAGTCAAGTGG spxA 949398 - 948994 - | transcriptional regulator Spx mreA 950373 - 949441 - | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 1180 949513 - 949527 + g 72 -4.3 -4.72846 | TCTATCAGTCAAATC TTCGA TTCCC TCGAA TTTTTCCATGTCTCG truB 951286 - 950402 - | tRNA pseudouridine synthase B TERM 1181 951240 - 951256 + g 80 -2.2 -5.54192 | opp_overlap 951231, overlap 951232 951231 951231 AAAACTGCGTCATGA GAGGTC ATGCC GGCTTC TTTTTTTAAATTAAT M5005_Spy_0962 952742 - 951402 - | hypothetical protein TERM 1182 952808 - 952786 - R 74 -3.4 -5.23316 | TATTATAGCAAAAAA GCTCAGGA AGTTAAG TCCCAAGC TGTCATAGATAAGAA M5005_Spy_0963 953795 - 952839 - | integral membrane protein TERM 1183 953429 - 953418 - G 73 -2.2 -5.24531 | AGTCCCTACAAAAAA GAGC ATAA ACTC ATTCGATAAAATAGG TERM 1184 953761 - 953744 - G 73 -5.5 -4.4959 | GGTAAGCAATTAAAA TGGCAAC AATG GTAGCCA AGGTCATTTTTAATG M5005_Spy_0964 954402 - 953806 - | type I restriction-modification system specificity subunit M5005_Spy_0965 955669 - 954494 - | ABC transporter permease protein M5005_Spy_0966 957131 - 955689 - | ABC transporter permease protein TERM 1185 955726 - 955736 + g 73 -5.4 -4.62471 | ACTGAGCTGCATTGA GGAA TAA TTCC TTTTTGACAATTAAG TERM 1186 957107 - 957118 + g 76 -4.4 -5.02323 | opp_overlap 957107 TAGCTCTCAAAATAT CCTT CCAT AAGG TTTTCTTTATCATAC M5005_Spy_0967 957847 - 957146 - | ABC transporter ATP-binding protein M5005_Spy_0968 957965 - 958507 + | TetR family transcriptional regulator M5005_Spy_0969 958647 - 958504 - | hypothetical protein TERM 1187 958629 - 958649 + g 77 -9.8 -3.52111 | opp_overlap 958629 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCG TERM 1188 958649 - 958629 - G 100 -9.8 -5.85737 | opp_overlap 958629 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCG M5005_Spy_0970 959291 - 958650 - | NAD-dependent K+ or Na+ uptake system component TERM 1189 959411 - 959392 - R 100 -12.2 -4.8543 | TAACCGTGACAAAAA GAGCTGGT AAAT ACCAGCTC AAACTTATCACCACC M5005_Spy_0971 959942 - 959454 - | Gls24 family general stress protein M5005_Spy_0972 960153 - 959953 - | hypothetical protein M5005_Spy_0973 960733 - 960194 - | Gls24 family general stress protein M5005_Spy_0974 960934 - 960746 - | small integral membrane protein M5005_Spy_0975 961532 - 960945 - | hypothetical protein M5005_Spy_0976 961799 - 961593 - | integral membrane protein TERM 1190 962196 - 962162 - R 100 -13.1 -5.89947 | opp_overlap 962162 GAAATCTAAAAAAAA TGAGCTTCCTACT CACTTATAT AGTAGGAAGCTCA TTTTTTTCTTATTTT TERM 1191 962162 - 962196 + r 100 -13.1 -6.04419 | opp_overlap 962162 GAAATCTAAAAAAAA TGAGCTTCCTACT CACTTATAT AGTAGGAAGCTCA TTTTTTTCTTATTTT pcrA 964523 - 962205 - | DNA helicase II M5005_Spy_0979 965061 - 964891 - | hypothetical protein TERM 1192 965333 - 965344 + GH 79 -3.6 -5.44119 | AGCGCTCTTTTGGAT GTGG GTTG CCGC TTTTTTTGGAATGGC M5005_Spy_0978 965052 - 966374 + | Na(+)-linked D-alanine glycine permease M5005_Spy_0980 966494 - 967729 + | cobalt-zinc-cadmium resistance protein TERM 1193 967853 - 967820 - T 90 -8.3 -5.18561 | opp_overlap 967820 GAAATAGTTAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC TERM 1194 967820 - 967853 + T 86 -6.1 -5.42259 | opp_overlap 967820 GAAATAGTTAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC cfa 968871 - 968098 - | cAMP factor TERM 1195 969166 - 969154 - R 76 -2.7 -5.46657 | opp_overlap 969142 969155, overlap 969142 969139 CAGTTTAATAAAAAA CCTTA AAC TAAGA TTTTTATTAAATCGT TERM 1196 969237 - 969226 - R 93 -5.8 -5.95539 | opp_overlap 969226 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT TERM 1197 969226 - 969237 + r 77 -5.8 -4.71482 | opp_overlap 969226 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT M5005_Spy_0982 970077 - 969241 - | histidine-binding protein TERM 1198 969645 - 969671 + g 91 -6 -5.40072 | overlap 969636 969647 ACACTTTATGTTTCA TATCTGATATTG TTT TAATATCAGATC TTTTTTTGACAACAA TERM 1199 969647 - 969669 + g 85 -8.6 -4.34482 | overlap 969645 ACTTTATGTTTCATA TCTGATATTG TTT TAATATCAGA TCTTTTTTTGACAAC M5005_Spy_0983 970722 - 970093 - | histidine transport ATP-binding protein TERM 1200 970582 - 970549 - G 71 -6.7 -4.13767 | TTCGCCATTGTAAAA GACTTGACCTGAATC AATA GATTCAAGACCAGCC AACATCCGTAAGAGT TERM 1201 970667 - 970679 + g 72 -3.4 -5.00884 | opp_overlap 970667 970670 970677 ACGGTTAGATTAAAG CCAT CAAAA ATGG TTTTTTGACCAAACT M5005_Spy_0984 971373 - 970732 - | histidine transport system permease protein TERM 1202 971470 - 971448 - R 70 -4.1 -4.82901 | opp_overlap 971448 971449 971453, overlap 971450 971453 GGTTTTTTATAAAAA TACAACCAG ATCAG CTGGTTGCG TATTATTATTAGATT TERM 1203 971468 - 971450 - R 82 -8.9 -4.03995 | opp_overlap 971449 971448 971453, overlap 971448 971453 TTTTTTATAAAAATA CAACCAG ATCAG CTGGTTG CGTATTATTATTAGA M5005_Spy_0985 971814 - 971479 - | phnA protein TERM 1204 971969 - 971991 + r 78 -10.6 -2.66979 | opp_overlap 971969, overlap 971968 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT TERM 1205 971991 - 971969 - R 100 -12.8 -5.61881 | opp_overlap 971969 971968 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT glmS 973824 - 972010 - | D-fructose-6-phosphate amidotransferase TERM 1206 974008 - 973983 - R 100 -9.1 -5.71983 | opp_overlap 973983 CTAATTATAAAAAAA GTAGAGTAGCC TGAC AACTACTCTAC TTCTACAAATCCAAA sipC 974557 - 974000 - | signal peptidase I TERM 1207 974750 - 974728 - R 85 -6.4 -5.21709 | opp_overlap 974728 TTTGATATCAAAAAA GGTTAGAA TATTGCC TTCTAACC TTTAGGTAAATAGTT pyk 976277 - 974775 - | pyruvate kinase TERM 1208 975917 - 975937 + g 75 -2.5 -5.26316 | overlap 975918 975919 GAGTTGATTGAATAC CTTGTGTAG TCG CTACACGGA TTTTTTCTCCAGTAA pfkA 977353 - 976340 - | 6-phosphofructokinase dnaE 980543 - 977433 - | DNA polymerase III DnaE TERM 1209 980883 - 980855 - g 73 -7.6 -3.9777 | gap 1 GTGAATATGCAGAAA TCGCA-GGTGTTA ATCC TAACACCATGCAA CGAGCGTTTACAGAA M5005_Spy_0991 980728 - 981099 + | GntR family transcriptional regulator TERM 1210 981680 - 981690 + G 73 -5.4 -4.63218 | CATTGAACCTATCCT TGAC GAA GTCA TTTTCTTGAAACAAG M5005_Spy_0992 981099 - 981797 + | ABC transporter ATP-binding protein M5005_Spy_0993 981807 - 982592 + | ABC transporter permease protein TERM 1211 982641 - 982602 - T 87 -12.6 -3.06737 | opp_overlap 982602 CAGTAAGCGTTAAGA CTTTCTTTTAAACTAT GACACACT ATAGTTTAAAAGAAAG TTTTTTTCAGTGTTC TERM 1212 982602 - 982641 + T 100 -13.3 -5.52909 | opp_overlap 982602 CAGTAAGCGTTAAGA CTTTCTTTTAAACTATG ACACAC TATAGTTTAAAAGAAAG TTTTTTTCAGTGTTC TERM 1213 982696 - 982673 - T 100 -6.8 -5.99154 | gap 1, opp_overlap 982673 TAGTAAATAAAAAAA CCGTCTTCCAT CAA ATAGAAG-CGG TTTATCAAATTAACA M5005_Spy_0994 983333 - 982719 - | putative membrane-associated alkaline phosphatase TERM 1214 983069 - 983059 - G 85 -6.8 -5.04733 | TAATTATAAATAAAA CCTG TTA CAGG GCCAAAGATTAAAAA TERM 1215 983806 - 983821 + r 93 -4.7 -5.98675 | opp_overlap 983806 CATAACTTACTAAAA CCTTG TTACAT CAAGG TTTTTTCTTTTTGTC M5005_Spy_0995 984112 - 983924 - | phage protein TERM 1216 984887 - 984875 - g 71 -4.9 -4.52803 | TATAAAGTTAGAAAA TATCT TAC AGATA ATAAGCAACTATATA speA2 984332 - 985087 + | enterotoxin TERM 1217 985156 - 985184 + T 91 -13.3 -3.31726 | opp_overlap 985161, overlap 985161 TTCTTTTATTAATGT AAAAACCGCTCAT TTG ATGAGCGGTTTTG TCTTATCTAAAGGAG TERM 1218 985161 - 985179 + T 100 -13.2 -4.76963 | opp_overlap 985161, overlap 985156 TTATTAATGTAAAAA CCGCTCAT TTG ATGAGCGG TTTTGTCTTATCTAA TERM 1219 985179 - 985161 - T 100 -13.2 -4.7629 | opp_overlap 985161 985156 TTATTAATGTAAAAA CCGCTCAT TTG ATGAGCGG TTTTGTCTTATCTAA M5005_Spy_0997 985868 - 985209 - | phage protein TERM 1220 985263 - 985274 + g 73 -5.8 -4.56775 | GTCTATTGTATTTGA TGGG TAAT CCCA TTTTTCGACAGACAT M5005_Spy_0998 986089 - 985868 - | phage protein M5005_Spy_0999 986872 - 986099 - | phage protein TERM 1221 986336 - 986351 + g 70 -3.2 -4.93877 | overlap 986337 TACATTTGAGATTGC TGCGAG ACCT TTCGCG TTTTGTTTAATAAAA TERM 1222 986904 - 986894 - R 74 -6.8 -4.27316 | TCCTTTAATTTAAAA TGGC TTT GCCA GCAAATGGCGCTGAG M5005_Spy_1000 987485 - 986883 - | phage protein TERM 1223 987208 - 987175 - G 72 -8.9 -3.28924 | gap 1 TATTTTTGCCCAGAA CGTCTAACATCAAGCG TTA CGCT-GTCGTCAGACG GAAAGACATAGCCAT TERM 1224 987448 - 987413 - G 88 -7.8 -5.13016 | gap 1 AATTAAAACTAAAAA GTGACGATG-TATCA CCTTGTT TGATAACATCGCCAC CGTCAACCTGTTTAA M5005_Spy_1001 988261 - 987497 - | phage-associated cell wall hydrolase M5005_Spy_1002 988595 - 988263 - | N-acetylmuramoyl-L-alanine amidase M5005_Spy_1003 988963 - 988595 - | phage protein TERM 1225 988793 - 988805 + gr 87 -4.8 -5.35721 | GATAGCACTTTCCAA GGCT TCCAT AGCC TTTTTATTATTGTCT M5005_Spy_1004 989096 - 988932 - | phage protein M5005_Spy_1005 989415 - 989068 - | phage protein M5005_Spy_1006 991177 - 989426 - | phage structural protein M5005_Spy_1007 994733 - 991293 - | phage protein M5005_Spy_1008 996218 - 994734 - | hypothetical protein M5005_Spy_1009 998024 - 996219 - | phage protein TERM 1226 996456 - 996474 + g 73 -8.8 -3.63805 | CATGCTGACATCGTG CGGGACAA CGG TTGCCCCG TTTGGCATATGAACT TERM 1227 997952 - 997967 + g 70 -3.2 -4.87318 | TTTCAGCTTGTTCTT GCGCTT TTTC AAACGC TTTTTGCATTTTAGA M5005_Spy_1010 998475 - 998017 - | phage protein TERM 1228 998094 - 998104 + gr 81 -5.4 -5.16071 | CCCAATATTTGCCTT CATC AGC GATG TTTTTATTAATGATT TERM 1229 998388 - 998357 - GR 100 -7.5 -5.54907 | gap 1, opp_overlap 998357 998362 TTGACAAAATAAAAA GCAAAGTCAATATC TTTGT GATACTGAC-TTGC TAATCTGTCATACTC M5005_Spy_1011 998765 - 998448 - | phage protein M5005_Spy_1012 999284 - 998778 - | antigen A M5005_Spy_1013 999706 - 999296 - | antigen B M5005_Spy_1014 1000103 - 999708 - | antigen C M5005_Spy_1015 1000411 - 1000100 - | phage protein M5005_Spy_1016 1000752 - 1000408 - | phage protein M5005_Spy_1017 1001059 - 1000766 - | phage protein M5005_Spy_1018 1001962 - 1001072 - | phage protein M5005_Spy_1019 1002550 - 1001981 - | phage scaffold protein TERM 1230 1002665 - 1002650 - R 82 -5.4 -5.25699 | AGGACATAATAAAAA GCCGTA TTGC TACGAC TCTAAAAATTTGTTT M5005_Spy_1020 1003064 - 1002795 - | phage protein M5005_Spy_1021 1003979 - 1003071 - | phage protein M5005_Spy_1022 1005273 - 1003948 - | portal protein TERM 1231 1004488 - 1004500 + gr 76 -7.7 -3.89956 | ATTGATAATGCGGGT GTCTC TAA GAGAC TTTAATGTCTCGTCG M5005_Spy_1023 1006547 - 1005273 - | terminase large subunit TERM 1232 1005401 - 1005420 + g 86 -9.4 -4.13014 | TAGGGTTGCCATCTC TATCGACT TGAT AGTCGATA TTTTCAAACTCTCGA TERM 1233 1006237 - 1006271 + g 90 -10.9 -4.29326 | opp_overlap 1006237 1006240 CTAAAGACAATGTAA TTACCTCTAGGGATG TACGT TATCCTTAGAGGTGA TTTGTTAAATTTAAA M5005_Spy_1024 1006917 - 1006537 - | phage protein TERM 1234 1006699 - 1006753 + g 71 -6.5 -4.21141 | opp_overlap 1006698 1006699, overlap 1006707 GCTTAGATTAACAAG CGTTCCAATCGCAGAAAGAGCATAT TTGCC AAAAGCTTTTTCTGCGATTTCATCG TTTAATTTATTCCAA TERM 1235 1006707 - 1006745 + g 83 -9.7 -3.90684 | opp_overlap 1006698 1006699, overlap 1006699 TAACAAGCGTTCCAA TCGCAGAAAGAGCATAT TTGCC AAAAGCTTTTTCTGCGA TTTCATCGTTTAATT TERM 1236 1006975 - 1006957 - R 100 -9.6 -5.63517 | opp_overlap 1006957 TTCGGAAATAAAAAA GTCACCAC AAT GTGATGAC TAATTGGTTAACCAT M5005_Spy_1025 1007961 - 1007527 - | ArpU family phage encoded transcriptional regulator TERM 1237 1008014 - 1008032 + r 82 -4.5 -5.54907 | overlap 1008008 AAATTTAACCAAGGG GGCGTTC CGTAT GGACGTC TTTTTGTTTTGTGGA M5005_Spy_1026 1008513 - 1008247 - | phage protein M5005_Spy_1027 1009034 - 1008510 - | phage protein M5005_Spy_1028 1009669 - 1009037 - | phage protein M5005_Spy_1029 1009955 - 1009671 - | phage protein M5005_Spy_1030 1010146 - 1009952 - | phage protein M5005_Spy_1031 1010358 - 1010119 - | phage protein M5005_Spy_1032 1010600 - 1010355 - | phage protein TERM 1238 1010418 - 1010432 + g 80 -7.8 -4.41047 | ATTTGGCAATATTCT GCGTTC TAA GAGCGC TTTTAATTGCCAAGT M5005_Spy_1033 1010953 - 1010597 - | phage protein M5005_Spy_1034 1011390 - 1010950 - | phage protein TERM 1239 1011332 - 1011357 + g 71 -6.1 -4.19817 | TAAGCTCCACTCCAT CTGCTAAAGCG TGGA CGTTTTTGCGG TTTTGGCTCAATCGG M5005_Spy_1035 1011593 - 1011390 - | phage protein ssb2 1012024 - 1011599 - | phage single-strand DNA binding protein TERM 1240 1011827 - 1011845 + g 73 -7.5 -4.08394 | GATCAAAGCACCTTT TTTAGCC CAGTT GGCTAAA TTTTCAGCAGACTGT ssb1 1012691 - 1012017 - | phage single-strand DNA binding protein M5005_Spy_1038 1013174 - 1012692 - | phage protein TERM 1241 1012970 - 1012985 + g 74 -6.2 -4.45259 | CTTCTGCTTGCTTTT GCTTTT TGTA AAAAGC TTCTTTTTCGGCTTT M5005_Spy_1039 1013450 - 1013196 - | phage protein M5005_Spy_1040 1013784 - 1013431 - | phage protein M5005_Spy_1041 1013934 - 1013797 - | phage protein M5005_Spy_1042 1014707 - 1013925 - | phage replication protein M5005_Spy_1043 1015524 - 1014694 - | phage protein M5005_Spy_1044 1015738 - 1016199 + | phage protein TERM 1242 1016233 - 1016249 + T 91 -4.4 -5.86976 | opp_overlap 1016233 TAAAATTAAGATAAG TGCTGC CGTTA GTAGCA TTTTTTCTTTTCTCC TERM 1243 1016555 - 1016584 + T 84 -5.7 -5.48213 | opp_overlap 1016555 TTCGTTATTTCTAAA CCAGCAATCGC CCGCTACT GCGTTTGTTGG TTTTTCTTTTCCGTA M5005_Spy_1045 1016849 - 1016649 - | transcriptional regulator M5005_Spy_1046 1016923 - 1017309 + | phage protein M5005_Spy_1047 1017507 - 1017298 - | phage protein M5005_Spy_1048 1017561 - 1018160 + | phage protein TERM 1244 1018174 - 1018186 + T 86 -6.2 -5.56263 | overlap 1018172 AACTCCCCCCTTTCC GCCC CTTGT GGGC TTTTTATTTTGTAAT M5005_Spy_1049 1018348 - 1018190 - | phage protein TERM 1245 1018474 - 1018523 + H 74 -3.2 -5.28942 | overlap 1018517 AGTAGTGAATCTTAA GCTTAAAC-CAAAGAATCTTGA TTTCGACT TCTAG-TTCTTTGCGTTTAGGC TTTTTGTTTAGCCTA M5005_Spy_1050 1018705 - 1019529 + | phage transcriptional repressor TERM 1246 1020087 - 1020111 + G 74 -5.1 -4.74103 | AAATGGCAAAAGATG TTTCCAGATGA TTT TTATATGGAAA TTTTTAGATTGAACG M5005_Spy_1051 1019565 - 1020458 + | phage protein TERM 1247 1020503 - 1020464 - f 100 -6.6 -6.04953 | gap 2 AGACAAATAAAAAAA GCCCCACGCTCTCAAAGT TTGGCG ACTCT--GAGCGTGAGGC AAGACAGTATAAGAA int.1 1020579 - 1021667 + | phi5005.1 integrase TERM 1248 1021762 - 1021777 + F 93 -4.7 -5.98675 | opp_overlap 1021762 CATAACTTACTAAAA CCTTG TTACAT CAAGG TTTTTTCTTTTTGTC M5005_Spy_1053 1021799 - 1021912 + | hypothetical protein TERM 1249 1021923 - 1021981 + F 75 -7.2 -4.18303 | gap 3, opp_overlap 1021928 1021938, overlap 1021926 1021931 1021932 1021933 TCTAAAAAAAAGAAT CAAAATAGTA-CTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGCTA-TATCTTG TTTATAATTTATGAT TERM 1250 1021976 - 1021928 - f 100 -9.8 -4.72772 | gap 1, opp_overlap 1021926 1021923 1021931 1021932 1021933, overlap 1021938 AAAAAAGAATCAAAA TAGTACTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGCTATA TCTTGTTTATAATTT TERM 1251 1021931 - 1021974 + F 81 -9.9 -3.39301 | gap 2, opp_overlap 1021928 1021938, overlap 1021926 1021923 1021932 1021933 AAAGAATCAAAATAG TA-CTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGCTA TATCTTGTTTATAAT TERM 1252 1021932 - 1021972 + F 83 -10.6 -3.25162 | gap 1, opp_overlap 1021928 1021938, overlap 1021931 1021926 1021923 1021933 AAGAATCAAAATAGT ACTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGC TATATCTTGTTTATA TERM 1253 1021933 - 1021971 + F 93 -14.1 -2.54013 | gap 1, opp_overlap 1021928 1021938, overlap 1021932 1021931 1021926 1021923 AGAATCAAAATAGTA CTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAG CTATATCTTGTTTAT TERM 1254 1021965 - 1021938 - f 100 -18.6 -3.88442 | opp_overlap 1021933 1021932 1021931 1021926 1021923, overlap 1021928 CAAAATAGTACTAAA TTCCCCATAGCG CATG CGCTATGGGGAA TCATAGCTATATCTT M5005_Spy_1054 1022030 - 1022650 + | hypothetical protein TERM 1255 1022678 - 1022707 + T 100 -13.1 -5.07941 | opp_overlap 1022678 ATATTTTGCTAAAAA GATTGATTTCGGT GTAC ATCGAAATCAATC TTTTTATATCATTTT TERM 1256 1022707 - 1022678 - T 100 -10.9 -4.57837 | opp_overlap 1022678 ATATTTTGCTAAAAA GATTGATTTCGGT GTAC ATCGAAATCAATC TTTTTATATCATTTT TERM 1257 1022824 - 1022854 + T 79 -8.4 -4.06502 | opp_overlap 1022824, overlap 1022827 AAGTCTGAAGTAAAA TCATAAGACAGCAG AAA CTACTGTCTTATAA TTTAGTTTAAGCATG TERM 1258 1022854 - 1022824 - T 100 -12.8 -4.41895 | opp_overlap 1022824 1022827 AAGTCTGAAGTAAAA TCATAAGACAGCAG AAA CTACTGTCTTATAA TTTAGTTTAAGCATG TERM 1259 1022827 - 1022851 + T 77 -10.1 -3.0693 | opp_overlap 1022824, overlap 1022824 TCTGAAGTAAAATCA TAAGACAGCAG AAA CTACTGTCTTA TAATTTAGTTTAAGC glgP 1025171 - 1022907 - | glycogen phosphorylase TERM 1260 1024232 - 1024254 + g 73 -5.6 -4.56775 | opp_overlap 1024231 1024229 1024232, overlap 1024234 CTTCTGCAAGAATAG TGTGGTTAGT GTA ACCAACCATA TTTTTCACAACAGCT malM 1026699 - 1025206 - | 4-alpha-glucanotransferase TERM 1261 1026802 - 1026780 - R 82 -4.2 -5.40474 | opp_overlap 1026772 AGTTTCCTAAAAAAA GTAACATTCC TTA AAAATGCTAC TTTTTTTGTTCTTAA malR 1027833 - 1026814 - | LacI family transcription regulator TERM 1262 1026880 - 1026870 - G 78 -4 -5.28166 | TAAAAGGAACAAAAA TAGT CTG ACTA AGATTCTGTTCATTG TERM 1263 1027404 - 1027419 + g 79 -4.8 -5.0133 | opp_overlap 1027389 1027406 TGACAAATGGTAAGT TATTTG TCAT CAAATA TTTTTTGACAGGATC TERM 1264 1028009 - 1027975 - g 73 -10.5 -2.91888 | opp_overlap 1027992, overlap 1027990 1027991 1027993 AAATTCTCTAAACTA TTTTTTTAAAAAAAA CGACC TTTTTTTTAAAAAAA GGCTTGACTTTTTCT TERM 1265 1028015 - 1027990 - g 85 -2.7 -5.75342 | gap 1, opp_overlap 1027992, overlap 1027975 1027991 1027993 TTTTTTTAAAAAAAA CGA-CCTTTTTT TTA AAAAAAGGCTTG ACTTTTTCTGCAAGC TERM 1266 1028011 - 1027993 - g 74 -9 -3.60685 | opp_overlap 1027992, overlap 1027975 1027991 1027990 TTTTAAAAAAAACGA CCTTTTTT TTA AAAAAAGG CTTGACTTTTTCTGC TERM 1267 1028502 - 1028483 - g 79 -8.6 -4.0162 | opp_overlap 1028482 1028483 GGTGCACAGTACAAA GGGAAAAC ATAT GCTTTCCC ATTTGGTATTGAATC malE 1027874 - 1029325 + | maltose/maltodextrin-binding protein TERM 1268 1029477 - 1029532 + F 95 -13 -3.78775 | opp_overlap 1029497, overlap 1029476 TTTTTGTTTTACTAG TAGCTTAGTGCTACTTAAATTTTTAA CTCT TTAAAAGTTTACGTAACACTTAGCTA TTTCATCCTAACAAG TERM 1269 1030483 - 1030495 + G 79 -4.8 -5.01497 | opp_overlap 1030483 AATCGGCTTGATTAA TGGC TCACT GCCA TTTTTATCTGATCCT malF 1029830 - 1030960 + | maltose transport system permease protein TERM 1270 1031034 - 1031047 + G 71 -6.7 -3.99775 | overlap 1031025 AATCATTTGGCTCTT CCCAA TCGC TTGGG TTATTCTTACTAGCT malG 1030960 - 1031796 + | maltose transport system permease protein TERM 1271 1031813 - 1031839 + F 100 -9.5 -4.7497 | opp_overlap 1031813 TTACAACATACCAAA CCTTCTAAGGG CAAGC CCTTTAGGAGG TTTTTGATAAATAAG TERM 1272 1032420 - 1032454 + G 70 -2.8 -5.03314 | opp_overlap 1032420 1032422 1032440, overlap 1032422 TCTTTCAAATTAATA CAGATTATGCTGCTCT CAA AGATCAGGCTAATCAG TTTTTTAAGGATGAA M5005_Spy_1061 1031951 - 1032751 + | LacI family transcription regulator TERM 1273 1032824 - 1032797 - T 100 -13.6 -4.27316 | opp_overlap 1032797 CCTTGTAACTCAAAA CCTTGCCTCTTT AGAT AAAGAAGCAAGG TTTTTTGATGTCTAA TERM 1274 1032797 - 1032824 + T 100 -11.4 -5.24989 | opp_overlap 1032797 CCTTGTAACTCAAAA CCTTGCCTCTTT AGAT AAAGAAGCAAGG TTTTTTGATGTCTAA malA 1033682 - 1032867 - | maltodextrose utilization protein malD 1034564 - 1033704 - | maltodextrin transport system permease protein malC 1035868 - 1034561 - | maltose transport system permease protein TERM 1275 1035748 - 1035715 - G 86 -11.9 -3.32769 | overlap 1035709 CTGTTAAAGCAGGAA TTCCTAGAACTACAA TTTC TAGTAGCTCTAGGAA GAAAACAACTAATAA TERM 1276 1035855 - 1035867 + g 83 -3.4 -5.54885 | GGCTTCTGTTGTCTT TGGT TCTCT ACCA TTTTTTATTCCTCTT amyA 1038078 - 1035943 - | alpha-amylase amyB 1039807 - 1038104 - | neopullulanase/cyclomaltodextrinase/maltogenic alpha-amylase malX 1041232 - 1039973 - | maltose/maltodextrin-binding protein TERM 1277 1040326 - 1040347 + g 79 -5.1 -5.1361 | overlap 1040343 AAATAACCCAAGCTT TACCACCTG CGAA CGGTTGGTA TTTTTTACCATTTGT TERM 1278 1041593 - 1041536 - H 100 -13.8 -4.88918 | opp_overlap 1041541, overlap 1041541 1041580 1041585 TCAGCGTAAATAAAA CAAAAGCTCTATAATCTCTTGAATGG GTAAAT CCACTGTAGAGATTATAGAGCTTTTT GAATATCAAAAAAGT TERM 1279 1041541 - 1041588 + H 100 -12.2 -4.70659 | opp_overlap 1041541 1041536 1041580 1041585 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGGG TAAA TCCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA TERM 1280 1041588 - 1041541 - H 100 -13.7 -5.34857 | opp_overlap 1041541, overlap 1041536 1041580 1041585 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGG GTAAAT CCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA M5005_Spy_1068 1041558 - 1041782 + | transposase M5005_Spy_1069 1042830 - 1041847 - | esterase dltD 1044111 - 1042861 - | protein precursor TERM 1281 1044059 - 1044045 - G 72 -3.6 -5.1166 | TAGGAAAACTAAAAA TAGTAA TCA CTACTA AAACAAAGGCAATAA M5005_Spy_1071 1044343 - 1044104 - | D-alanine--poly(phosphoribitol) ligase subunit 2 M5005_Spy_1072 1045617 - 1044361 - | protein DltB TERM 1282 1045493 - 1045504 + g 70 -3.6 -4.87803 | overlap 1045488 ACCAAGGTTTCATAA GTGC TTAA GCGC TTTTGTTTAAAAATC dltA 1047152 - 1045614 - | D-alanine--D-alanyl carrier protein ligase M5005_Spy_1074 1047307 - 1047164 - | hypothetical protein uvrB 1049562 - 1047571 - | excinuclease ABC subunit B TERM 1283 1048216 - 1048228 + g 75 -10.5 -2.92267 | overlap 1048214 1048210 GAACGTCCGTTCATC GCGCG CTA CGCGC TGGTTAATTTCTCCC TERM 1284 1048565 - 1048553 - G 87 -6.3 -5.33848 | overlap 1048555 ATCATAATTAAAAAA TCTTC TGG GAAGA AATCTAACAAGGTAT TERM 1285 1049659 - 1049645 - H 76 -4.3 -5.11937 | opp_overlap 1049645 1049647, overlap 1049647 AATAAGCGTAAAAAA CATGT CATTT ACATG TTATGTTTTATGACA TERM 1286 1049685 - 1049647 - H 71 -6.3 -4.17355 | opp_overlap 1049645 1049647, overlap 1049645 TAAGCGTAAAAAACA TGTCATTTACATGTTAT GTTTT ATGACATATAAATAACA AATTTCTTGCTTAAT TERM 1287 1050221 - 1050210 - g 88 -3 -6.02345 | opp_overlap 1050210 TAACTATAAAAAAAA GTAT GATT ATAC TGTTAAAACATTTGA glnH 1049755 - 1051929 + | transporter TERM 1288 1051955 - 1051945 - g 71 -4 -4.96646 | TGACAGAATTAAAAA TTGA TGT TCAA GATTTACACAAATCT TERM 1289 1052333 - 1052310 - g 84 -6.7 -4.84359 | opp_overlap 1052316 GCACTTCTAGAAAAA GTCGGACTT TCTGAT AAGGCCGAC GCCTTCCCAGGAAGT TERM 1290 1052316 - 1052347 + G 73 -8 -3.85698 | opp_overlap 1052310 CTAGAAAAAGTCGGA CTTTCTGATAAGGC CGAC GCCTTCCCAGGAAG TTTATCCGGCGGGCA glnQ.2 1051929 - 1052669 + | glutamine transport ATP-binding protein TERM 1291 1052736 - 1052701 - T 100 -10.6 -5.055 | opp_overlap 1052707, overlap 1052704 1052707 CTAACTTCCAAAAAA TAATAAGGCAAGGAAA CAGG TTTCCTTGCCTTTTTT GGTTACTGTTATTAT TERM 1292 1052733 - 1052704 - T 100 -12.3 -4.62085 | opp_overlap 1052707, overlap 1052701 1052707 ACTTCCAAAAAATAA TAAGGCAAGGAAA CAGG TTTCCTTGCCTTT TTTGGTTACTGTTAT TERM 1293 1052730 - 1052707 - T 100 -14 -4.40692 | opp_overlap 1052707, overlap 1052704 1052701 TCCAAAAAATAATAA GGCAAGGAAA CAGG TTTCCTTGCC TTTTTTGGTTACTGT TERM 1294 1052707 - 1052730 + T 100 -14 -5.31059 | opp_overlap 1052707 1052704 1052701 TCCAAAAAATAATAA GGCAAGGAAA CAGG TTTCCTTGCC TTTTTTGGTTACTGT TERM 1295 1052763 - 1052812 + T 70 -2.4 -5.25803 | gap 1, opp_overlap 1052766 1052768, overlap 1052764 1052766 1052767 TTATTCAAACCAGCA AAATA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCCTATGC TTTTTTATGGGCGTT TERM 1296 1052766 - 1052809 + T 75 -8.5 -3.44801 | gap 1, opp_overlap 1052766 1052768, overlap 1052764 1052763 1052767 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCCTA TGCTTTTTTATGGGC TERM 1297 1052809 - 1052766 - T 74 -6.3 -4.39386 | gap 1, opp_overlap 1052766 1052764 1052763 1052767, overlap 1052768 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCCTA TGCTTTTTTATGGGC TERM 1298 1052767 - 1052807 + T 77 -9.2 -3.28457 | opp_overlap 1052766 1052768, overlap 1052766 1052764 1052763 TCAAACCAGCAAAAT AGGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCC TATGCTTTTTTATGG TERM 1299 1052806 - 1052768 - T 87 -10.5 -3.79533 | opp_overlap 1052767 1052766 1052764 1052763, overlap 1052766 CAAACCAGCAAAATA GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCC CTATGCTTTTTTATG M5005_Spy_1078 1052969 - 1052817 - | hypothetical protein TERM 1300 1052970 - 1052983 + r 74 -2.3 -5.47159 | ATTTTTTTCTGTCAT GCAAG GTCA CTCGC TTTTTCTTTATTGGC M5005_Spy_1079 1054345 - 1052966 - | PTS system, cellobiose-specific IIC component TERM 1301 1053427 - 1053441 + g 82 -11.4 -3.21593 | opp_overlap 1053426 1053423, overlap 1053424 1053438 GGTATGGTAAATTAG CAGCGC TAT GCGCTG TATTGTAAGCAGCTG M5005_Spy_1080 1054972 - 1054523 - | hypothetical protein M5005_Spy_1081 1055304 - 1054969 - | PTS system, cellobiose-specific IIA component M5005_Spy_1082 1055618 - 1055307 - | PTS system, cellobiose-specific IIB component M5005_Spy_1083 1057635 - 1055641 - | PTS system, mannitol (cryptic)-specific IIA component M5005_Spy_1084 1058835 - 1057741 - | outer surface protein bglA.2 1060244 - 1058844 - | beta-glucosidase M5005_Spy_1086 1060469 - 1061164 + | nicotinamide mononucleotide transporter TERM 1302 1061191 - 1061149 - T 91 -5 -5.84381 | opp_overlap 1061159, overlap 1061151 1061159 TTACCAAGAAAAAAA GGTCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAATT TTTCACGTTCTAAGC TERM 1303 1061189 - 1061151 - T 85 -12 -3.03774 | opp_overlap 1061159, overlap 1061149 1061159 ACCAAGAAAAAAAGG TCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAA TTTTTCACGTTCTAA TERM 1304 1061159 - 1061181 + T 100 -9.2 -4.92239 | opp_overlap 1061151 1061149 1061159 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA TERM 1305 1061181 - 1061159 - T 100 -9.2 -5.16472 | opp_overlap 1061159, overlap 1061151 1061149 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA M5005_Spy_1087 1061327 - 1061169 - | putative cytoplasmic protein obgE 1062703 - 1061396 - | GTPase ObgE TERM 1306 1061795 - 1061806 + g 86 -4.4 -5.4505 | ATCAAACTCGTCATA TTGG GCAG CCAA TTTTTTCTTGAAGGC TERM 1307 1061813 - 1061828 + g 77 -6.2 -4.65078 | GGCAGCCAATTTTTT CTTGAA GGCT TTCAAG TTTTCTTGAGCCTCT TERM 1308 1062760 - 1062749 - R 79 -3.6 -5.44119 | TTTACTTTAAAAAAA CGCC TTTC AGCG TTTCCTTACATTAAT M5005_Spy_1089 1062894 - 1062766 - | hypothetical protein TERM 1309 1063085 - 1063128 + H 93 -7.6 -5.63504 | gap 1, opp_overlap 1063097, overlap 1063086 CCTCGTCTGGTGAAC T-GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGCTA TTTTTTTATGAAATT TERM 1310 1063086 - 1063126 + H 100 -12.7 -4.45201 | opp_overlap 1063097, overlap 1063085 CTCGTCTGGTGAACT GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGC TATTTTTTTATGAAA TERM 1311 1063227 - 1063202 - g 70 -7.7 -3.75665 | overlap 1063203 GGAGAGTCCATTAAA TCCATATCAAA AAAG TTTGATATGGC AGAATCCGATCTCAA TERM 1312 1063226 - 1063203 - g 80 -11.2 -2.85078 | overlap 1063202 GAGAGTCCATTAAAT CCATATCAAA AAAG TTTGATATGG CAGAATCCGATCTCA M5005_Spy_1090 1063136 - 1063651 + | transposase TERM 1313 1064477 - 1064433 - g 100 -13.2 -4.62054 | opp_overlap 1064439, overlap 1064434 1064439 CGAATTAAAGCAAAA CTAAAAGGACTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCAA TAATTATTTGTCCAA TERM 1314 1064476 - 1064434 - g 100 -14.5 -3.36148 | opp_overlap 1064439, overlap 1064433 1064439 GAATTAAAGCAAAAC TAAAAGGACTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCA ATAATTATTTGTCCA TERM 1315 1064439 - 1064471 + G 70 -7.8 -3.74658 | opp_overlap 1064434 1064433 1064439 AAAGCAAAACTAAAA GGACTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT TERM 1316 1064471 - 1064439 - g 100 -12.2 -4.74084 | opp_overlap 1064439, overlap 1064434 1064433 AAAGCAAAACTAAAA GGACTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT M5005_Spy_1091 1063824 - 1064480 + | transposase rsuA 1065263 - 1064529 - | ribosomal small subunit pseudouridine synthase A M5005_Spy_1093 1065375 - 1065740 + | hypothetical protein TERM 1317 1065801 - 1065748 - T 100 -12.1 -5.13722 | gap 1, opp_overlap 1065763 CGGAGTAAAACAAAA GAAAAGAACCAAAAAGGTAAGCAATC CCT AAGTGCTTACCTTTTTGGTTATCT-C AATCAATAAAATAGC TERM 1318 1065763 - 1065787 + T 88 -7.2 -4.96646 | opp_overlap 1065748 GAAAAGAACCAAAAA GGTAAGCAAT CCCTA AGTGCTTACC TTTTTGGTTATCTCA M5005_Spy_1094 1067080 - 1065860 - | major facilitator transporter TERM 1319 1066591 - 1066579 - G 76 -3.3 -5.20783 | ATCCAAAGAGAAAAA GGCCA CGC CAGCC TAGACTTGGAGCCAG TERM 1320 1067171 - 1067156 - H 93 -7.6 -5.49809 | CAAAGGTCAAAAAAA GACTTG GAAA CAAGTC CGCAAGTCCATCAAA M5005_Spy_1095 1067382 - 1068938 + | hypothetical protein TERM 1321 1068971 - 1068940 - T 100 -13.2 -4.44046 | gap 1, opp_overlap 1068946 1068947 1068949 TTTACCGTAAATAAA CCATAA-CCACCCGT CTA ACGGGTGATTTATGG TATCTCTCAATAAAG TERM 1322 1068946 - 1068964 + T 82 -8.8 -4.05389 | opp_overlap 1068940, overlap 1068947 1068949 GTAAATAAACCATAA CCACCCGT CTA ACGGGTGA TTTATGGTATCTCTC TERM 1323 1068947 - 1068963 + T 87 -12.3 -3.0251 | opp_overlap 1068940, overlap 1068946 1068949 TAAATAAACCATAAC CACCCGT CTA ACGGGTG ATTTATGGTATCTCT TERM 1324 1068949 - 1068961 + T 74 -9.1 -3.05982 | opp_overlap 1068940, overlap 1068947 1068946 AATAAACCATAACCA CCCGT CTA ACGGG TGATTTATGGTATCT TERM 1325 1068994 - 1069018 + T 100 -13.7 -5.11033 | opp_overlap 1068994 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTAGCCTTCTA TERM 1326 1069018 - 1068994 - T 100 -11.5 -5.46129 | opp_overlap 1068994 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTAGCCTTCTA M5005_Spy_1096 1069446 - 1069045 - | thioesterase superfamily protein M5005_Spy_1097 1070043 - 1069531 - | phosphorylase Pnp/Udp family protein TERM 1327 1070135 - 1070157 + r 76 -4.1 -5.17576 | ACAGGGTAAACCTTT GTGGCTGAA ATGAA TTCTGCTAC TTTTTTACCTTGATG M5005_Spy_1098 1071703 - 1070348 - | tRNA (uracil-5-)-methyltransferase TERM 1328 1071771 - 1071748 - R 90 -8.2 -5.02074 | opp_overlap 1071736 1071748 1071751, overlap 1071736 CCATTGCTCAAAAAA GAAGAGCAAC TTTA GTTACTCTCC ATTATACCATATCTT M5005_Spy_1099 1073236 - 1071785 - | LytR family transcriptional regulator TERM 1329 1072180 - 1072193 + g 71 -3.8 -4.8622 | CTTCGATGGTTTGGT TGGG AACAAC CCCA TTTTTCATTCGCAAG aroK 1073935 - 1073444 - | shikimate kinase TERM 1330 1073587 - 1073597 + g 81 -5.4 -5.02201 | opp_overlap 1073587 ACTTAAGAAATAGAG GTCT TTG AGAC TTTTTATCATGTTTT M5005_Spy_1101 1075220 - 1073928 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1331 1075300 - 1075273 - R 85 -6.4 -5.252 | CATCCTCATAAAAAA TGAAGCAAGAAA ATAG TTTCTCACTCCA CGACTTATTATCTTT M5005_Spy_1102 1076287 - 1075322 - | ribonuclease BN TERM 1332 1076135 - 1076122 - G 71 -3.9 -4.88407 | TGAGGTAAGGAAAAA TATTG GCTG CAATA ACAATTAATGGAAAG map 1077149 - 1076289 - | methionine aminopeptidase M5005_Spy_1104 1078448 - 1077165 - | CBS domain-containing cytosolic protein M5005_Spy_1105 1078999 - 1078457 - | ribosomal-protein-alanine acetyltransferase TERM 1333 1078529 - 1078552 + g 76 -4.6 -5.13521 | opp_overlap 1078530, overlap 1078530 1078538 ATCACTTCCTTTAAA ACAGGTTTTT AGTT GAAAACCTGC TTTTTTAGCTACTTT TERM 1334 1078551 - 1078530 - G 73 -7.4 -4.08216 | opp_overlap 1078529 1078530 1078538 TCACTTCCTTTAAAA CAGGTTTT TAGTTG AAAACCTG CTTTTTTAGCTACTT TERM 1335 1078530 - 1078551 + g 70 -8.1 -3.66486 | opp_overlap 1078530, overlap 1078529 1078538 TCACTTCCTTTAAAA CAGGTTTTT AGTT GAAAACCTG CTTTTTTAGCTACTT TERM 1336 1078978 - 1078968 - G 79 -3.2 -5.42259 | GGAGTCTCAAAAAAA GCAA ACA CTGC AAGCTTTGTCCAAAT TERM 1337 1079208 - 1079191 - R 83 -6.3 -5.00846 | opp_overlap 1079185 1079191, overlap 1079185 TAAATATCAGAAAAA GAGAATC TTTC GATTCCC TTGTTTCATTTGCTA grab 1079890 - 1079237 - | protein G-related alpha 2M-binding protein TERM 1338 1080229 - 1080246 + r 87 -9.9 -3.94853 | opp_overlap 1080229 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA TERM 1339 1080246 - 1080229 - R 100 -9.9 -5.48063 | opp_overlap 1080229 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA murZ 1081507 - 1080248 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1340 1080485 - 1080515 + g 86 -9 -4.40237 | GATATCTGCTCCCAT GCGCATCAACTCTG GCA CATGGTTAATGCGC TTTTCATATATAGTG TERM 1341 1081632 - 1081660 + r 71 -3.2 -5.16237 | opp_overlap 1081612 1081632, overlap 1081635 TTTAATAACAAAAAA GCAGAGTAAG ATTTTTTCA CTTACTCTAC TTTTTTAATAAAGTT TERM 1342 1081660 - 1081632 - R 86 -5.4 -5.64873 | opp_overlap 1081632 1081635, overlap 1081612 TTTAATAACAAAAAA GCAGAGTAAG ATTTTTTCA CTTACTCTAC TTTTTTAATAAAGTT metK2 1082877 - 1081681 - | S-adenosylmethionine synthetase TERM 1343 1083055 - 1083034 - R 73 -9.5 -2.79684 | gap 1, opp_overlap 1083033, overlap 1083027 CTAGTAAGGCAACTA GCTAGTCCAC CTA GTGG-CTAGC GTCCATTAACCAGAC TERM 1344 1083346 - 1083327 - R 93 -7.9 -5.44119 | opp_overlap 1083327 TTTATTTCAAAAAAA CCTCAAG GTTATT CTTGAGG TTCTCTTGATAGTCA TERM 1345 1083327 - 1083346 + r 79 -8.6 -3.72742 | opp_overlap 1083327 TTTATTTCAAAAAAA CCTCAAGG TTAT TCTTGAGG TTCTCTTGATAGTCA inlA 1085792 - 1083414 - | internalin protein TERM 1346 1083583 - 1083596 + g 76 -4.5 -5.09204 | CTTTCTTTCGCCTTA GTAGC CATA GCTGC TTTTTCTTCAGCTGT TERM 1347 1086605 - 1086616 + G 80 -4.4 -5.24129 | GATGTCATTATTGGG GTTG GTCT CAAC TTTTTTGTCACCGAC TERM 1348 1086797 - 1086773 - g 93 -8 -5.38054 | opp_overlap 1086772, overlap 1086758 GTTTACAAAGAAAAA TCACTTGTTC TTAAT AAACAAGTGA CCTTTATAGAAAATA birA 1085996 - 1086937 + | biotin--protein ligase M5005_Spy_1111 1087220 - 1086912 - | hypothetical protein TERM 1349 1087173 - 1087194 + g 80 -10.2 -3.77906 | opp_overlap 1087172 1087171, overlap 1087176 AACGAGATAAAACGT GGGTAAGG GCAAAA CCTTACCC TTATGTATTTCAGTT M5005_Spy_1112 1088880 - 1087210 - | DNA polymerase III subunits gamma and tau TERM 1350 1088776 - 1088760 - G 79 -5.1 -5.06451 | overlap 1088768 TAGGACCTGAAAAAA GATAAGC ATG GCTAATC TTGCCAGATTCAACT M5005_Spy_1113 1089377 - 1088880 - | GAF domain-containing protein M5005_Spy_1114 1089522 - 1090331 + | hypothetical protein M5005_Spy_1115 1090647 - 1090384 - | hypothetical protein TERM 1351 1090715 - 1090693 - R 88 -7.1 -4.9645 | AGCACAACAATAAAA GAGCAGATT TAAAT AATCTACTC AGCCACTTCCACTAT udk 1091353 - 1090727 - | uridine kinase TERM 1352 1092056 - 1092067 + G 72 -4.4 -4.68994 | opp_overlap 1092056 AGAGCAAACCAACGA TGCT ATTC AGCA TTTTTACCTCATGGT deaD2 1091451 - 1092536 + | ATP-dependent RNA helicase TERM 1353 1092611 - 1092575 - T 100 -15.5 -4.73388 | opp_overlap 1092578 1092581, overlap 1092578 AAGGGCTACTAAAAA CAACAATCCAATTACTT CAA AAGTAATTGGATTGTTT AGTATATCAATTCTA TERM 1354 1092608 - 1092578 - T 100 -17.2 -4.47707 | opp_overlap 1092578 1092581, overlap 1092575 GGCTACTAAAAACAA CAATCCAATTACTT CAA AAGTAATTGGATTG TTTAGTATATCAATT TERM 1355 1092578 - 1092608 + T 100 -17.2 -3.89614 | opp_overlap 1092575 1092578, overlap 1092581 GGCTACTAAAAACAA CAATCCAATTACTT CAA AAGTAATTGGATTG TTTAGTATATCAATT TERM 1356 1092581 - 1092605 + T 100 -13.1 -4.06993 | opp_overlap 1092578 1092575, overlap 1092578 TACTAAAAACAACAA TCCAATTACTT CAA AAGTAATTGGA TTGTTTAGTATATCA M5005_Spy_1118 1093920 - 1092700 - | peptidoglycan N-acetylglucosamine deacetylase TERM 1357 1093419 - 1093409 - G 73 -6.8 -4.26076 | opp_overlap 1093408 1093409 TTATCGCTATTAAAA CCAG CAT CTGG ATATTTTTTTTCAAC TERM 1358 1094005 - 1093970 - R 100 -14.4 -5.69023 | opp_overlap 1093970 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAA CCTAACTTTTTGTTTA TTTTTTTTATTACTG TERM 1359 1093970 - 1094005 + r 100 -12.2 -6.13503 | opp_overlap 1093970 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAA CCTAACTTTTTGTTTA TTTTTTTTATTACTG gapN 1095442 - 1094015 - | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 1360 1094458 - 1094448 - G 73 -5.4 -4.64334 | opp_overlap 1094448 AACCCTTCAACAAAA TCAG CAG CTGA TGTATCAATTAATGG TERM 1361 1095617 - 1095598 - R 95 -8.6 -5.1675 | opp_overlap 1095598 TTAGCTAGCAAAAAA GAGCTGGT TTAA ACCAACTC TTTAACCCTTTAATC pstI 1097360 - 1095627 - | phosphoenolpyruvate-protein phosphotransferase TERM 1362 1096105 - 1096118 + g 72 -3.1 -5.1356 | ACCGCAACGCCTTCT GCAAG CAAG TTTGC TTTTTCTTCGTCAAA TERM 1363 1096589 - 1096604 + g 76 -3.2 -5.28942 | TGTGCGCATCTTTAA GGAGAG ACCA CTCTGC TTTTTGTTTGGCATA ptsH 1097628 - 1097365 - | phosphocarrier protein HPr TERM 1364 1097750 - 1097761 + H 71 -3 -5.10163 | AACGACAAAAAATGT GAAA TTAT TTTC TTTTATTTTCACGTT nrdH 1098021 - 1098239 + | glutaredoxin TERM 1365 1098358 - 1098368 + G 73 -5.4 -4.62069 | opp_overlap 1098351 1098355 1098358 CATAAAGACAAAGAA GCTT TAA AAGC TTTTTCCGCTGAAAA nrdE.2 1098259 - 1100418 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1366 1100670 - 1100697 + F 82 -8.5 -4.07868 | TTAAACTTATTATTA CCGGTAGAACT TTGGTC GGTTCTACTGG TTTATCTCGATATCC TERM 1367 1100827 - 1100807 - gf 72 -8.4 -3.36505 | AGACGTCATTGACAA GTCAACTT GGGAA AAGTTGAC CGAACAATTTTGGCT TERM 1368 1101211 - 1101201 - gf 75 -5.4 -4.77173 | GCCTTACAAAAGAAA GTTG CCT CAAC ATATCTCGAAACTTT nrdF 1100751 - 1101710 + | ribonucleotide-diphosphate reductase subunit beta TERM 1369 1101721 - 1101743 + GF 100 -13.6 -4.77719 | opp_overlap 1101725 TCTAATAGTGCTCAC GAGACTGATA ATC TATCAGTCTC TTTTCTTAACTTTTG M5005_Spy_1125 1101685 - 1102998 + | chloride channel protein TERM 1370 1103325 - 1103280 - g 77 -4.8 -4.93316 | gap 1, opp_overlap 1103290, overlap 1103282 1103290 CAAGAATATGAAAAA TATGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-ATG CTCAATTTAAGACAA TERM 1371 1103323 - 1103282 - g 73 -7.4 -4.06487 | gap 1, opp_overlap 1103290, overlap 1103280 1103290 AGAATATGAAAAATA TGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-A TGCTCAATTTAAGAC TERM 1372 1103316 - 1103290 - g 93 -12.3 -4.02468 | opp_overlap 1103290, overlap 1103282 1103280 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT TERM 1373 1103290 - 1103316 + G 95 -14.5 -3.23395 | opp_overlap 1103282 1103280 1103290 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT M5005_Spy_1126 1103214 - 1103429 + | transposase pseudogene M5005_Spy_1127 1103462 - 1103758 + | transposase pseudogene M5005_Spy_1128 1104071 - 1104292 + | transposase pseudogene M5005_Spy_1129 1105079 - 1104384 - | CAAX amino protease M5005_Spy_1130 1105859 - 1105098 - | hypothetical protein TERM 1374 1105367 - 1105354 - G 73 -6.7 -4.2018 | overlap 1105358 1105360 AAATTTGGAAAATAA GGAAC ATCG GTTCC CCGAATGGCATTGTA M5005_Spy_1131 1106077 - 1105856 - | Cro/CI family transcriptional regulator TERM 1375 1106428 - 1106391 - R 86 -10.2 -3.61178 | opp_overlap 1106390 1106400, overlap 1106400 GGTAGTCATTTCAAA TATAAAAAACCAAGTT CTAAAT AACTTGGTTTTTTATG GATTTACACTATTTC TERM 1376 1106400 - 1106419 + r 85 -6.5 -5.33866 | opp_overlap 1106400 1106391, overlap 1106390 TTCAAATATAAAAAA CCAAGTT CTAAAT AACTTGG TTTTTTATGGATTTA TERM 1377 1106419 - 1106400 - R 87 -6.5 -5.56264 | opp_overlap 1106390 1106400, overlap 1106391 TTCAAATATAAAAAA CCAAGTT CTAAAT AACTTGG TTTTTTATGGATTTA alaS 1109050 - 1106432 - | alanyl-tRNA synthetase TERM 1378 1106761 - 1106781 + g 79 -9.7 -3.78189 | opp_overlap 1106761 1106760 1106758 1106763, overlap 1106764 1106772 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGTT TERM 1379 1106781 - 1106761 - G 70 -9.7 -2.54801 | opp_overlap 1106761 1106764 1106772, overlap 1106760 1106758 1106763 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGTT TERM 1380 1106764 - 1106778 + g 72 -10 -2.65994 | opp_overlap 1106763 1106761 1106760 1106758, overlap 1106761 1106772 CTTTAAAGACATCAC CAGCTG CTG CAGCTG CTGCTTTTTCTTTAA TERM 1381 1106772 - 1106782 + g 89 -6.8 -5.33026 | opp_overlap 1106763 1106761 1106760 1106758, overlap 1106764 1106761 ACATCACCAGCTGCT GCAG CTG CTGC TTTTTCTTTAAGTTC prsA 1110492 - 1109437 - | foldase protein PrsA M5005_Spy_1134 1111262 - 1110555 - | O-methyltransferase TERM 1382 1111301 - 1111284 - R 93 -7 -5.75478 | opp_overlap 1111284 1111279 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT TERM 1383 1111284 - 1111301 + r 75 -7 -4.24432 | opp_overlap 1111284, overlap 1111279 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT M5005_Spy_1135 1112524 - 1111328 - | oxalate/formate antiporter TERM 1384 1112868 - 1112814 - R 100 -21.9 -5.40873 | opp_overlap 1112827, overlap 1112815 AATATAAAAAGAAAA TGACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATCC TAAACTCTTTTTGTC TERM 1385 1112867 - 1112815 - R 100 -25.4 -3.80863 | opp_overlap 1112827, overlap 1112814 ATATAAAAAGAAAAT GACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATC CTAAACTCTTTTTGT TERM 1386 1112827 - 1112855 + r 100 -14.8 -4.07124 | opp_overlap 1112815 1112814 AATGACCGATAGAAA TGGAGATTCACA CCAAC TGTGAATCTCCA TTTCTATCAATCCTA pepB 1114705 - 1112900 - | oligoendopeptidase F M5005_Spy_1137 1115680 - 1114718 - | putative competence protein/transcription factor M5005_Spy_1138 1116691 - 1115975 - | ribosomal small subunit pseudouridine synthase A TERM 1387 1116119 - 1116133 + g 81 -7.2 -4.49389 | overlap 1116105 GGTCAAAAACATTTT TTTCAC TTG GTGAAA TTTTCCTTCTGAAAT nagB 1117514 - 1116810 - | glucosamine-6-phosphate isomerase queA 1117716 - 1118744 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase M5005_Spy_1141 1118751 - 1119971 + | putative cytoplasmic protein TERM 1388 1119981 - 1120006 + T 95 -9 -5.14563 | opp_overlap 1119981 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGCCAAGC TTTTTTAATGAGCAA TERM 1389 1120006 - 1119981 - T 100 -11.2 -4.67904 | opp_overlap 1119981 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGCCAAGC TTTTTTAATGAGCAA M5005_Spy_1142 1120675 - 1120085 - | hypothetical protein M5005_Spy_1143 1120920 - 1120672 - | hypothetical protein M5005_Spy_1144 1121132 - 1120905 - | hypothetical protein TERM 1390 1121102 - 1121113 + g 76 -4.4 -5.08731 | TTCCTAAAATAATCC CTAC AATG GTAG TTTTCTTCTTTCTTA TERM 1391 1121287 - 1121267 - R 100 -9.8 -5.13521 | AAAGCACTTAAAAAA CCAATCTC TTTTT GAGATTGG AAACCCTTTTCTTAT sodA 1121904 - 1121299 - | superoxide dismutase holA 1123041 - 1122001 - | DNA polymerase III subunit delta TERM 1392 1122739 - 1122750 + g 79 -3.6 -5.45802 | opp_overlap 1122730, overlap 1122730 TAAATAGGCTTCAAA GGCC TTTA GGTC TTTTTCTTTTAAGAA comEC 1125355 - 1123112 - | COME operon protein 3 TERM 1393 1123540 - 1123522 - G 76 -11 -2.5294 | overlap 1123521 1123519 CACTTCCCATAATAG GCAACTGG TCT CCAGCTGC TAAAACCCTAACGTG TERM 1394 1123750 - 1123786 + g 73 -7.2 -4.07568 | GAATTAAGGTTTTCT GAGCATTAGCTACGTG ATGTC CTCGTCGCCAGTGCTC TTTTGAAGAAAAGAA TERM 1395 1124000 - 1123990 - G 89 -5.4 -5.39755 | overlap 1123997 GATAATCATAAAAAA TAGC GAA GCTA ATCACCAAGATAAGC M5005_Spy_1148 1125998 - 1125336 - | COME operon protein 1 M5005_Spy_1149 1126938 - 1126198 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 1396 1127405 - 1127376 - g 70 -2.9 -5.1101 | gap 1, opp_overlap 1127377, overlap 1127377 TGATGATTTAAAAAA CCTCCTAAACCATG TGC CACG-TTCAGGAGT TGATTTGATGCTCTG M5005_Spy_1150 1127056 - 1127832 + | methyltransferase M5005_Spy_1151 1127822 - 1128100 + | hypothetical protein TERM 1397 1128094 - 1128118 + T 93 -7.3 -5.71983 | opp_overlap 1128094, overlap 1128083 AAAAGAAAAGAAAAA TCATTGAGA CTTATCA TCTCAATGA TTTTTTTATGCTTCA TERM 1398 1128118 - 1128094 - T 93 -8 -5.70761 | opp_overlap 1128094 1128083 AAAAGAAAAGAAAAA TCATTGAGAC TTATC ATCTCAATGA TTTTTTTATGCTTCA M5005_Spy_1152 1129107 - 1128124 - | kup system potassium uptake protein M5005_Spy_1153 1130123 - 1129059 - | kup system potassium uptake protein TERM 1399 1130248 - 1130215 - R 93 -9.1 -4.37658 | opp_overlap 1130222, overlap 1130222 AACTTTTTCAGAAAA TTAAAAAGAGCTGAC TCTC ATCAACTCTCTTTAA GCTTATTCACCTTTG TERM 1400 1130241 - 1130222 - R 77 -5 -5.1417 | opp_overlap 1130222, overlap 1130215 TCAGAAAATTAAAAA GAGCTGAC TCTC ATCAACTC TCTTTAAGCTTATTC deaD 1131870 - 1130251 - | ATP-dependent RNA helicase prfC 1133721 - 1132177 - | peptide chain release factor 3 TERM 1401 1133930 - 1133907 - R 75 -9.6 -2.60032 | opp_overlap 1133907, overlap 1133906 1133905 1133909 TTTTTTTTAAAAATC GAGCCTGGAA ATCA TCCCAGACTC TTCTTATTATAGCTG M5005_Spy_1156 1134664 - 1133969 - | hypothetical protein TERM 1402 1134720 - 1134732 + r 74 -6.3 -4.38712 | opp_overlap 1134719 CATGAGAGAACAAGC CTTTC TCT GAAAG TTTTATAAAAATCAA murF 1136135 - 1134744 - | UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase TERM 1403 1135183 - 1135196 + g 72 -3.1 -5.05782 | gap 1, opp_overlap 1135181 1135183, overlap 1135181 TCTGACAAAATATCA GCA-CC ATT GGCTGC TTTTTTCCACTCCGT TERM 1404 1135767 - 1135786 + g 75 -9.4 -3.29704 | overlap 1135764 AGTTTTGTAAGTGGT TGATAGGA CAGC TCCTATCA TATCTTTGGTGGAAG ddl 1137372 - 1136326 - | D-alanyl-alanine synthetase A TERM 1405 1136521 - 1136509 - G 72 -3.3 -5.06414 | overlap 1136516 TTGGGTCAAGAAAAA GTCAC AAC GGGAC AACCCACAACCACCT recR 1138069 - 1137473 - | recombination protein RecR M5005_Spy_1160 1138307 - 1138116 - | penicillin-binding protein M5005_Spy_1161 1139647 - 1138868 - | formate transporter TERM 1406 1139711 - 1139742 + r 72 -8.1 -3.47841 | gap 1, opp_overlap 1139711 1139713 1139716, overlap 1139713 AATTTTCCTAAAAAA TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA TTATCATATAACTAT TERM 1407 1139742 - 1139711 - R 100 -10.3 -5.01732 | gap 1, opp_overlap 1139711 1139713, overlap 1139713 1139716 AATTTTCCTAAAAAA TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA TTATCATATAACTAT TERM 1408 1139713 - 1139739 + r 81 -10.9 -2.88069 | opp_overlap 1139713 1139711 1139716, overlap 1139711 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1409 1139739 - 1139713 - R 87 -13.1 -2.75708 | opp_overlap 1139711 1139713, overlap 1139711 1139716 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1410 1139736 - 1139716 - R 89 -11.2 -3.52177 | opp_overlap 1139713 1139711, overlap 1139713 1139711 TCCTAAAAAATGCAA GCCCTTTC AACAA GAAAGGGC TCGTCATTATCATAT M5005_Spy_1162 1140313 - 1139771 - | hypothetical protein TERM 1411 1140267 - 1140256 - G 70 -5.8 -4.42238 | TTATCGGAATCAAAA TCGC AAAT GCGA CCAAAATAGAGGTAT M5005_Spy_1163 1140995 - 1140474 - | biotin repressor family transcriptional regulator TERM 1412 1141101 - 1141070 - R 89 -11 -3.61902 | opp_overlap 1141078, overlap 1141078 TCTTAGGATATAGAA CCAAAAAACCAGAC CAAA GTCTGGTTTTTAAG TTATTCACCACCAAG TERM 1413 1141093 - 1141078 - R 95 -9 -5.35354 | opp_overlap 1141078, overlap 1141070 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1414 1141078 - 1141093 + r 93 -9 -4.8143 | opp_overlap 1141078 1141070 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1415 1141126 - 1141140 + r 70 -3.6 -4.84274 | overlap 1141127 ACCAAGGTAGTATTC TTTAAC AAT GTTAAG TTTTTCATCTAATTC gpmA 1141797 - 1141102 - | phosphoglyceromutase TERM 1416 1142388 - 1142378 - g 73 -6.8 -4.18094 | GAAACCATTTTAAAA GCCA TCA TGGC TTCAGATTATGAGGG TERM 1417 1142402 - 1142420 + G 71 -6 -4.1822 | GCTTCAGATTATGAG GGTCTAGT GGA ACTAAACC TTTCTTGCCCTAACG pyrD 1142036 - 1142971 + | dihydroorotate dehydrogenase 1A TERM 1418 1143022 - 1142989 - T 100 -14.1 -5.1615 | gap 1, opp_overlap 1142989 TTAATAGTCAAAAAA GCTTGGAAATGTGCAC TTT GTACAC-TTTCCAAGC TTTTTAAAATGGGAA TERM 1419 1142989 - 1143022 + T 100 -12.7 -4.62069 | gap 1, opp_overlap 1142989 TTAATAGTCAAAAAA GCTTGGAAA-TGTGCA CTT TGTACACTTTCCAAGC TTTTTAAAATGGGAA M5005_Spy_1166 1143199 - 1143026 - | hypothetical protein M5005_Spy_1167 1145133 - 1143271 - | lead, cadmium, zinc and mercury transporting ATPase TERM 1420 1145465 - 1145424 - R 100 -11.1 -5.88197 | opp_overlap 1145427 1145428, overlap 1145427 1145428 CCAAATATAAAAAAA GAACCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGATTT TTCTAGACGAATTAT TERM 1421 1145462 - 1145427 - R 100 -12.8 -4.94703 | opp_overlap 1145427 1145428, overlap 1145424 1145428 AATATAAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1422 1145427 - 1145462 + r 77 -6.2 -4.83169 | opp_overlap 1145424 1145427 1145428, overlap 1145428 AATATAAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1423 1145461 - 1145428 - R 100 -14.1 -3.53161 | opp_overlap 1145428 1145427, overlap 1145427 1145424 ATATAAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA TERM 1424 1145428 - 1145461 + r 81 -9.7 -3.49419 | opp_overlap 1145427 1145424 1145428, overlap 1145427 ATATAAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA M5005_Spy_1168 1145846 - 1145664 - | phage protein TERM 1425 1145923 - 1145891 - H 82 -9.6 -3.61438 | opp_overlap 1145890 1145889 1145899, overlap 1145886 1145889 1145894 1145899 TTACAGGAAATAATA TAATTAAATTTAAA GGTCG TTTAAATTTAATTA ACATCTTTTTTTGTT TERM 1426 1145920 - 1145894 - H 73 -6.9 -3.92071 | opp_overlap 1145890 1145889 1145899, overlap 1145886 1145891 1145889 1145899 CAGGAAATAATATAA TTAAATTTAAA GGTCG TTTAAATTTAA TTAACATCTTTTTTT TERM 1427 1146192 - 1146211 + G 71 -5 -4.63218 | opp_overlap 1146192 CAGAAAAATTAGAAA TTTCCCTG ATAC CACGGAAA TTTTGTTAGGAACGA spd3 1146085 - 1146885 + | streptodornase TERM 1428 1146926 - 1146966 + F 93 -10.8 -4.06491 | opp_overlap 1146926 TCTAGATTGTGAACA TTATCCCAAATGTTAGAT TATTT ATTTAATATTTGGGGTAA TTTGTATAAAGTTAA M5005_Spy_1170 1147096 - 1147590 + | hypothetical protein TERM 1429 1147609 - 1147630 + T 83 -7.2 -4.76963 | opp_overlap 1147609, overlap 1147604 CTTAAACACAAAAAA CCGCCCTC GATTAA GAGAGCGG TTTTGTCTTATCTAA TERM 1430 1147630 - 1147609 - T 100 -9.4 -5.56264 | opp_overlap 1147604 1147609 CTTAAACACAAAAAA CCGCCCTC GATTAA GAGAGCGG TTTTGTCTTATCTAA M5005_Spy_1171 1148865 - 1147660 - | phage-associated cell wall hydrolase TERM 1431 1148741 - 1148768 + g 71 -7.6 -3.94381 | opp_overlap 1148729 1148738 1148736, overlap 1148742 ATACCAAACAGAGCG TTGTGTGGGGCA TGTT TGCCCCACCCGC TTTCTAAGATTGTCT TERM 1432 1148742 - 1148767 + g 78 -11.1 -2.95906 | opp_overlap 1148729 1148738 1148736, overlap 1148741 TACCAAACAGAGCGT TGTGTGGGGCA TGTT TGCCCCACCCG CTTTCTAAGATTGTC M5005_Spy_1172 1149208 - 1148981 - | holin M5005_Spy_1173 1149480 - 1149205 - | phage protein TERM 1433 1149241 - 1149259 + g 76 -4.7 -5.02715 | CATATCTTTTAAATC TTTAACA TCATC TGTTAAA TTTTTAATTTGCTCT TERM 1434 1149299 - 1149328 + g 82 -8.6 -4.16943 | gap 1 ATCAACGTTTTATTT TGCTCAGCGTGCT CTTCA AGC-CGCCGAGCA TTTTGGCGTGTAACA M5005_Spy_1174 1150107 - 1149490 - | phage protein M5005_Spy_1175 1150541 - 1150104 - | phage protein TERM 1435 1150295 - 1150326 + g 77 -5.2 -4.93296 | gap 1, overlap 1150283 GTAGGCCGTTGAACT CGTCGAGTTTAGCGG GGT CTGCTA-GCTTGATG TTTTTGTGCTCATCA M5005_Spy_1176 1152421 - 1150553 - | phage infection protein TERM 1436 1152133 - 1152097 - G 76 -10.9 -2.74144 | opp_overlap 1152097 1152100, overlap 1152096 CTTTTAGCTGTAAAT CAAGCTCTTTGACCTGC TGA GCTAGTCCAAAAGCTTG TTGAGTGGTAACTTT M5005_Spy_1177 1153113 - 1152418 - | phage protein TERM 1437 1153041 - 1153019 - G 76 -7 -4.37886 | overlap 1153020 1153022 TCATTTTCGACAAAA CTAGGGGATA GAA TATCCCCCAC ATCGTAACCGGTCAA TERM 1438 1153040 - 1153020 - G 75 -10.5 -3.2241 | overlap 1153019 1153022 CATTTTCGACAAAAC TAGGGGATA GAA TATCCCCCA CATCGTAACCGGTCA TERM 1439 1153038 - 1153022 - G 79 -10.9 -3.1733 | overlap 1153020 1153019 TTTTCGACAAAACTA GGGGATA GAA TATCCCC CACATCGTAACCGGT M5005_Spy_1178 1155467 - 1153110 - | phage protein TERM 1440 1154306 - 1154290 - G 77 -5 -4.91712 | GCGAAGTTAGAAAAA CCTGCC TGTAG GGCTGG TAAAATTGCTGAAAT M5005_Spy_1179 1155838 - 1155467 - | phage protein TERM 1441 1155745 - 1155769 + g 75 -10 -2.97456 | opp_overlap 1155745, overlap 1155747 AACCGACAGCAAAAA CAGCCACCTG ATAAG CAGGTAGCTG TCTGTAATCATATAT TERM 1442 1155769 - 1155745 - G 100 -12.2 -4.82154 | opp_overlap 1155745 1155747 AACCGACAGCAAAAA CAGCCACCTG ATAAG CAGGTAGCTG TCTGTAATCATATAT TERM 1443 1155868 - 1155884 + r 80 -6.7 -4.65182 | opp_overlap 1155867 CTAGTTTTTTAAATC TTTTTGA CTT TCAAAAA TTTCTTTGATTTCTA M5005_Spy_1180 1156116 - 1155853 - | phage protein M5005_Spy_1181 1156720 - 1156127 - | major tail protein M5005_Spy_1182 1157067 - 1156732 - | phage protein TERM 1444 1156959 - 1156924 - G 76 -7.6 -4.20136 | opp_overlap 1156925, overlap 1156925 ACTTTGAAAAGCAAA CGTGGAACTTAGCAAA TGAT TTTGCTTAGCCCCACT AGTCTTTTCTAAGAT TERM 1445 1156958 - 1156925 - G 79 -11.1 -3.11359 | opp_overlap 1156925, overlap 1156924 CTTTGAAAAGCAAAC GTGGAACTTAGCAAA TGAT TTTGCTTAGCCCCAC TAGTCTTTTCTAAGA TERM 1446 1157037 - 1157015 - G 89 -5.6 -5.42259 | gap 1, opp_overlap 1157019 TGATGTTCAAAAAAA GACG-GCAC ATCTAA GTGCTCGTC TAAATATTTTTTGAT M5005_Spy_1183 1157304 - 1157068 - | phage protein M5005_Spy_1184 1157635 - 1157297 - | phage protein M5005_Spy_1185 1158017 - 1157595 - | phage protein M5005_Spy_1186 1158227 - 1158027 - | phage protein M5005_Spy_1187 1159138 - 1158227 - | phage structural protein TERM 1447 1158368 - 1158378 + g 75 -5.4 -4.68908 | ACCGTATTTAATGAT TTCC ATT GGAA TTTGTTTTGCATAAC M5005_Spy_1188 1159624 - 1159163 - | phage protein TERM 1448 1159697 - 1159684 - R 82 -4.5 -5.55664 | opp_overlap 1159659 1159684 TTAGCAGTAAAAAAA CACCC TTTC GGATG TCGTTTTTTAACAGC M5005_Spy_1189 1161120 - 1159705 - | phage terminase TERM 1449 1161195 - 1161180 - R 79 -5.4 -5.19328 | opp_overlap 1161180 1161192 AGGGCACAATAAAAA GCCGTA TTGC TACGAC TTTGATTTCTAAAGG M5005_Spy_1190 1161496 - 1161230 - | phage protein M5005_Spy_1191 1161750 - 1161535 - | phage protein TERM 1450 1161718 - 1161698 - GR 80 -6.2 -4.77165 | gap 1, opp_overlap 1161698 TTGGGCATAAGAAAA GCACC-AGA TTGC TCTAGGTGC TTAATATATTGCGTT M5005_Spy_1192 1161952 - 1161719 - | phage protein M5005_Spy_1193 1163442 - 1161949 - | phage protein M5005_Spy_1194 1164703 - 1163435 - | phage protein TERM 1451 1164686 - 1164661 - G 87 -8.3 -4.59773 | CTCCAGTTTTAAAAA GAGCTAACTTC CTAC GAAGATAGCCC ATACCCATATAATTC M5005_Spy_1195 1165056 - 1164700 - | phage protein M5005_Spy_1196 1165549 - 1165205 - | HNH endonuclease family protein TERM 1452 1165506 - 1165522 + g 91 -6.5 -5.37043 | opp_overlap 1165505 1165506, overlap 1165508 TTATTTCTGTCAAAT GCTACCC GGT GGGTACC TTTTTTATCTGCCCT M5005_Spy_1197 1166077 - 1165658 - | phage protein TERM 1453 1166128 - 1166144 + r 95 -8.7 -5.24129 | opp_overlap 1166128, overlap 1166137 1166142 ATTATTAACTAAGGA GTCAGCT GTG AGCTGGC TTTTTTGTGGAGAAA TERM 1454 1166137 - 1166168 + r 71 -6.6 -4.18638 | opp_overlap 1166128, overlap 1166128 1166142 TAAGGAGTCAGCTGT GAGCTGGCTTTTTT GTGG AGAAAAGCCCTCTC TTCCTTTTTTTTATT M5005_Spy_1198 1166980 - 1166345 - | phage protein M5005_Spy_1199 1167251 - 1166982 - | phage protein M5005_Spy_1200 1167847 - 1167335 - | phage protein TERM 1455 1167611 - 1167632 + g 76 -2.3 -5.44119 | gap 1, overlap 1167612 TTTAAGCATGGATTG CT-GGTTAGG TCC CATAACCGAG TTTTTTTCGACTGCG M5005_Spy_1201 1168257 - 1167844 - | phage protein M5005_Spy_1202 1168530 - 1168363 - | phage protein M5005_Spy_1203 1169337 - 1168540 - | phage protein TERM 1456 1168601 - 1168620 + g 83 -6.4 -5.06451 | TCGCAATGACCGCAA GGCTTAGG TTTT TCTAGGCC TTTTTTAACATCATC TERM 1457 1169047 - 1169058 + g 76 -4.4 -5.0538 | AATCATCTGTTCTGC GACT AAAT AGTC TTTTTTGAGCTGACC M5005_Spy_1204 1170263 - 1169334 - | recT protein M5005_Spy_1205 1170595 - 1170266 - | phage protein M5005_Spy_1206 1170857 - 1170651 - | phage protein M5005_Spy_1207 1171006 - 1170866 - | phage protein M5005_Spy_1208 1171236 - 1171003 - | phage protein M5005_Spy_1209 1171606 - 1171217 - | DNA replication protein M5005_Spy_1210 1171990 - 1171751 - | phage replication protein M5005_Spy_1211 1172275 - 1172090 - | phage protein xis 1172588 - 1172277 - | excisionase TERM 1458 1172640 - 1172657 + r 100 -7.7 -5.9218 | TTAATCTAGTTTTGA GTCCGAT TGCC GTCGGAC TTTTTTTGTTATCTG M5005_Spy_1213 1172851 - 1172666 - | phage protein M5005_Spy_1214 1173018 - 1173257 + | phage protein TERM 1459 1173288 - 1173313 + TF 75 -4.7 -4.9792 | overlap 1173290 CGGTTTTTATCAGTT CAGGGTCTATC TTAT GATAGGCTCTC TTTTTCTCTCCGCTA TERM 1460 1173290 - 1173311 + TF 75 -7.3 -4.11141 | overlap 1173288 GTTTTTATCAGTTCA GGGTCTATC TTAT GATAGGCTC TCTTTTTCTCTCCGC M5005_Spy_1216 1174406 - 1174140 - | phage protein M5005_Spy_1215 1173399 - 1174205 + | phage protein TERM 1461 1174246 - 1174290 + gT 100 -10.1 -5.5604 | TCAGCCAATCTAATT GCTTCATCATCAATCGGACTA TTG TAGTCTTCTAGGTGATGAAGC TTTTTTGTTAGTTGA M5005_Spy_1217 1175154 - 1174438 - | phage antirepressor protein M5005_Spy_1218 1175357 - 1175166 - | phage protein TERM 1462 1175808 - 1175832 + H 100 -10.1 -4.54727 | ATCAAAATTGGTGGG TGCTAGAGTAT CGG ACACTCTAGCA TTTTCATTTCGAGCA TERM 1463 1175863 - 1175889 + H 100 -10.2 -4.67635 | GAATAATTTCCGTAG CACCATCTAGAT AGC AGCTAGGTGGTG TTTTATACTTTTAAA TERM 1464 1175936 - 1175912 - H 100 -9.4 -5.63517 | opp_overlap 1175911 CTTTTAAACAAAAAA GTACGCTATC CAATC GATAACGTAC ATGATATAATATTGA TERM 1465 1176114 - 1176143 + H 84 -6.5 -5.09762 | opp_overlap 1176114 GCAAAATAGAAAAAA CCCCTTGCA TTTGTAGGATTT TGCAAGGGG TTTTTATGTTCGCCT TERM 1466 1176143 - 1176114 - H 89 -6.5 -5.63645 | opp_overlap 1176114 GCAAAATAGAAAAAA CCCCTTGCA TTTGTAGGATTT TGCAAGGGG TTTTTATGTTCGCCT TERM 1467 1176311 - 1176331 + H 70 -4.1 -4.66537 | opp_overlap 1176311 1176313, overlap 1176313 GGCATAAGAAAAACA TAGTTATAA CGT TTATAACTC TTTTATATTACGCGG M5005_Spy_1219 1176511 - 1176858 + | Cro/CI family phage transcriptional regulator M5005_Spy_1220 1176862 - 1177242 + | phage protein M5005_Spy_1221 1177254 - 1177520 + | phage protein int.2 1177644 - 1178786 + | phi5005.2 integrase TERM 1468 1178861 - 1178825 - T 86 -5.9 -5.47159 | gap 1, opp_overlap 1178820 1178825 CCTGAACACAAAAAA GCCCACTGCA-CAGGC TGGAAC GCTTGATACAATGGGC TTTTATCTATGCAAT M5005_Spy_1223 1179151 - 1178876 - | DNA-binding protein HU M5005_Spy_1224 1179837 - 1179250 - | hypothetical protein M5005_Spy_1225 1180657 - 1179815 - | lipase/acylhydrolase M5005_Spy_1226 1181501 - 1180650 - | degV family protein TERM 1469 1180855 - 1180867 + g 74 -4.9 -4.67982 | overlap 1180862 AGGTAACTATCTAAC CATTT CGT AAATG TTTTATTACCTCGAC TERM 1470 1181689 - 1181648 - R 74 -5.9 -4.64591 | gap 1, opp_overlap 1181648 TAACGAGATACAAAA CGAGGCAAAAGT-CAACCTT TTC ACGCTTGAACATTTGCCCCG TCTTTTACAACTACA M5005_Spy_1227 1182658 - 1181717 - | hypothetical protein TERM 1471 1181813 - 1181823 + g 83 -3.2 -5.61881 | overlap 1181799 CCCCTCTCCCGTTTG TGGC AGG GCTA TTTTTCTTTTTGCAA TERM 1472 1182842 - 1182816 - R 78 -7.4 -4.09285 | overlap 1182818 TATGAAAATATCAAA TACCAAACATAA TCT TAATGTTTGGCA AGTAGTTCACGAGCC TERM 1473 1182840 - 1182818 - R 71 -7.8 -3.62411 | overlap 1182816 TGAAAATATCAAATA CCAAACATAA TCT TAATGTTTGG CAAGTAGTTCACGAG recN 1184491 - 1182830 - | DNA repair protein TERM 1474 1183001 - 1182987 - G 77 -5 -4.99043 | overlap 1182989 TCTTTAGAAATAAAA TACTGA TAA TCAGCA ATAGCAATAACTTGA argR1 1184983 - 1184513 - | arginine repressor TERM 1475 1184891 - 1184868 - G 71 -9.6 -2.84325 | opp_overlap 1184871, overlap 1184865 1184863 TCTCTTGAAATAGTA GCCTGGGTTA ATTC TAACCCATGC TCTGCCAATAATCTT M5005_Spy_1230 1185797 - 1184970 - | hemolysin fps 1186662 - 1185790 - | dimethylallyltransferase/geranyltranstransferase xseB 1186877 - 1186662 - | exodeoxyribonuclease VII small subunit TERM 1476 1186701 - 1186714 + g 76 -3.1 -5.25803 | GCCATCAGCTTGCAT CACTT TGAC GAGTG TTTTTTCTGCCGCTT xseA 1188195 - 1186855 - | exodeoxyribonuclease VII large subunit TERM 1477 1187985 - 1188000 + g 80 -4.7 -5.26316 | TTTTCATGCCTTCTT CTAGG TCGAAT CCTAG TTTTTTATAGACTCC TERM 1478 1188314 - 1188295 - R 91 -2.8 -5.98675 | opp_overlap 1188296, overlap 1188296 CAGAAAAACAAAAAA GGAAGCCA TTGC TGACTTCT TATATTCTCTTATGT TERM 1479 1188313 - 1188296 - R 71 -6.3 -4.15545 | opp_overlap 1188296, overlap 1188295 AGAAAAACAAAAAAG GAAGCCA TTGC TGACTTC TTATATTCTCTTATG folD 1189202 - 1188348 - | methylenetetrahydrofolate dehydrogenase (NADP+)/methenyltetrahydrofolate cyclohydrolase M5005_Spy_1235 1191113 - 1189410 - | phosphoglucomutase TERM 1480 1189842 - 1189856 + g 73 -7.8 -3.85698 | opp_overlap 1189842 TACAATCATCATAGA GGCGCT AAC AGCGTC TTTGTCACGAACAAA TERM 1481 1190523 - 1190539 + g 71 -5.1 -4.63675 | overlap 1190520 1190524 AAGTCCACTGTCCAG AGCCTTT TCA AAAGGCA TTTGTTTGATTTCCT TERM 1482 1190524 - 1190538 + g 70 -8.6 -3.36578 | overlap 1190523 1190520 AGTCCACTGTCCAGA GCCTTT TCA AAAGGC ATTTGTTTGATTTCC phr 1192691 - 1191282 - | deoxyribodipyrimidine photolyase TERM 1483 1191560 - 1191544 - G 90 -10.9 -4.2142 | AATATTCTAAAATAA GGAACAG CAT CTGTTCC AGTGGAAGCAGCCCA TERM 1484 1192783 - 1192825 + r 100 -24 -3.14463 | opp_overlap 1192783 1192791, overlap 1192791 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TCA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1485 1192825 - 1192783 - R 100 -24 -3.73968 | opp_overlap 1192783 1192791, overlap 1192791 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TCA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1486 1192791 - 1192817 + r 100 -16.8 -4.56607 | opp_overlap 1192783 1192791, overlap 1192783 TAGCAAATTATAAAA GGAAGTCCTAAA TCA TTTAGGACTTCC TTTTATAATTCATAG TERM 1487 1192817 - 1192791 - R 100 -16.8 -4.63172 | opp_overlap 1192791 1192783, overlap 1192783 TAGCAAATTATAAAA GGAAGTCCTAAA TCA TTTAGGACTTCC TTTTATAATTCATAG artP 1193574 - 1192840 - | arginine transport ATP-binding protein artQ 1194260 - 1193574 - | arginine transport system permease protein TERM 1488 1194375 - 1194345 - R 83 -10.6 -3.30007 | opp_overlap 1194351 1194353 1194371, overlap 1194353 AATACTTTTTGACAA TAAAAAAACCTGCC TCA GGCAAGTCTCTTTA CTATGTCAAGCTTAA TERM 1489 1194367 - 1194353 - R 100 -7.8 -5.88565 | opp_overlap 1194353 1194351, overlap 1194345 TTGACAATAAAAAAA CCTGCC TCA GGCAAG TCTCTTTACTATGTC M5005_Spy_1239 1194617 - 1194387 - | putative cytoplasmic protein clpE 1194915 - 1197197 + | ATP-dependent Clp protease ATP-binding subunit TERM 1490 1197206 - 1197233 + F 77 -5.6 -5.01546 | opp_overlap 1197208 1197210 1197223, overlap 1197208 CGATTAACGTTAGCT AAGAGAGTTTCT ATAA GGAGACTCTCTC TTTTTCTATCAATTT TERM 1491 1197208 - 1197231 + F 81 -8.2 -4.11744 | opp_overlap 1197208 1197210 1197223, overlap 1197206 ATTAACGTTAGCTAA GAGAGTTTCT ATAA GGAGACTCTC TCTTTTTCTATCAAT mutT 1197325 - 1197780 + | mutator protein (7,8-dihydro-8-oxoguanine-triphosphatase) M5005_Spy_1242 1197831 - 1198133 + | putative cytoplasmic protein TERM 1492 1198182 - 1198159 - T 100 -10.4 -4.55287 | opp_overlap 1198159 GCTATTCAGACAAAA CTTAGCCCTT CTAA AAGAGCTAAG TTTTTTTATTAGCGA TERM 1493 1198159 - 1198182 + T 100 -8.2 -5.7946 | opp_overlap 1198159 GCTATTCAGACAAAA CTTAGCCCTT CTAA AAGAGCTAAG TTTTTTTATTAGCGA TERM 1494 1198334 - 1198357 + T 90 -11 -3.85505 | opp_overlap 1198334 AGCTCTACTAAAAAA CCATCAGGTC CTAA GACCCGATGG TTGTCTTCTTACTCA TERM 1495 1198357 - 1198334 - T 100 -13.2 -5.14965 | opp_overlap 1198334 AGCTCTACTAAAAAA CCATCAGGTC CTAA GACCCGATGG TTGTCTTCTTACTCA ileS 1201199 - 1198398 - | isoleucyl-tRNA synthetase divIVAS 1202230 - 1201472 - | cell division initiation protein M5005_Spy_1245 1203031 - 1202240 - | RNA binding protein M5005_Spy_1246 1203285 - 1203031 - | integral membrane protein M5005_Spy_1247 1203958 - 1203290 - | putative cytoplasmic protein M5005_Spy_1248 1204629 - 1203958 - | pyridoxal-5'-phosphate family protein ftsZ 1205951 - 1204632 - | cell division protein FtsZ ftsA 1207339 - 1205975 - | cell division protein TERM 1496 1207336 - 1207325 - G 73 -2.2 -5.243 | CAAACCAGTAAAAAA GCCA TTTC TAGC CATTCACTTGACCTC TERM 1497 1207451 - 1207430 - R 100 -10.3 -5.69473 | opp_overlap 1207430 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA TERM 1498 1207430 - 1207451 + r 100 -10.3 -5.60689 | opp_overlap 1207430 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA divIB 1208699 - 1207551 - | cell division protein TERM 1499 1208487 - 1208497 + g 73 -5.4 -4.49344 | TTCTGACTCAATTTC CTGA CTA TCAG TTTTCTCATCAGTTT murG 1209803 - 1208700 - | N-acetylglucosaminyl transferase murD 1211140 - 1209782 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 1500 1211424 - 1211453 + r 89 -8.8 -4.50976 | gap 1, opp_overlap 1211424, overlap 1211419 TGAACTATTAAAAAA GGACTGATATTGT CTAAA ACAA-ATCAGTCC TTTTATCGTATAAAA TERM 1501 1211453 - 1211424 - R 100 -9.5 -5.2189 | gap 1, opp_overlap 1211419 1211424 TGAACTATTAAAAAA GGACTGATATTGTC TAA AACAA-ATCAGTCC TTTTATCGTATAAAA M5005_Spy_1254 1211761 - 1211510 - | hypothetical protein TERM 1502 1211852 - 1211808 - R 78 -10.4 -2.76737 | opp_overlap 1211809 TAGGAACTTGTAAAC GCAAAAAGACCTTTAAAAAA TGACT TTTCTTAAATATCTTTTTGC TATTTTATTTAGTTA typA 1213724 - 1211883 - | GTP-binding protein M5005_Spy_1256 1214296 - 1213907 - | rhodanese-related sulfurtransferase glcK 1215277 - 1214306 - | glucokinase/xylose repressor M5005_Spy_1258 1215485 - 1215282 - | putative cytoplasmic protein TERM 1503 1215457 - 1215440 - G 83 -4.9 -5.33026 | opp_overlap 1215440 CAAGGTAAACAAAAA TGCCAAA GTTT TTTAGCA ATTGTTGCACATCAT TERM 1504 1215604 - 1215581 - R 84 -6.1 -5.26316 | opp_overlap 1215581 TGATTCCATAAAAAA GAAGCCAAT TTTATC ATTGACTTC TTTTATCCTAAGGCA dpr 1216154 - 1215627 - | non-specific DNA-binding protein/iron-binding ferritin-like antioxidant protein TERM 1505 1215653 - 1215673 + g 70 -2.5 -5.04385 | overlap 1215656 1215657 GGCCTTGTCCACGCT CTGCTTGGA GCA TCCAAATGG TTTTTTCAGCCTCTG TERM 1506 1215896 - 1215886 - G 73 -8.2 -3.80733 | GCTAGGGTAGAATAA GGCG CTC CGCC AATAGTGATCAAACG M5005_Spy_1260 1216382 - 1217008 + | prepilin peptidase family protein TERM 1507 1217043 - 1217022 - T 95 -8.8 -5.37043 | opp_overlap 1217021 1217020 AGGCCAGATAAAAAA CCTAGTCA TTTTAG TGACTAGG AATATTTTGTCATCA M5005_Spy_1261 1218169 - 1217090 - | radical SAM protein M5005_Spy_1262 1218793 - 1218173 - | transcriptional regulator TERM 1508 1218769 - 1218780 + g 70 -3 -5.14819 | TATTATAGTTGTACA TTTC TGGC GAAA TTTCTTTTTTCATTT M5005_Spy_1263 1219207 - 1219088 - | hypothetical protein M5005_Spy_1264 1219942 - 1219241 - | ribose operon repressor M5005_Spy_1265 1220265 - 1220035 - | ribose operon repressor TERM 1509 1220575 - 1220527 - R 76 -4.5 -5.08824 | opp_overlap 1220527 1220528, overlap 1220528 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTATGAGTTAA TERM 1510 1220527 - 1220575 + r 79 -4.5 -5.31456 | opp_overlap 1220527 1220528, overlap 1220528 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTATGAGTTAA TERM 1511 1220574 - 1220528 - R 73 -8 -3.64812 | opp_overlap 1220528 1220527, overlap 1220527 TTTTATGTAAAAAAT GATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACC GTTTTTTATGAGTTA M5005_Spy_1266 1221668 - 1220631 - | ATP-dependent protease La TERM 1512 1220827 - 1220798 - G 70 -5.7 -4.36592 | opp_overlap 1220798, overlap 1220801 TCGGAACAAAAAATA TATCTGCACCAGC TTCA GCTGCTGCAACTA CTTTAAGACCTGCAC coaD 1222146 - 1221655 - | phosphopantetheine adenylyltransferase M5005_Spy_1268 1222675 - 1222136 - | methyltransferase asnA 1223790 - 1222798 - | asparagine synthetase AsnA TERM 1513 1223971 - 1223938 - R 100 -14.9 -4.37711 | opp_overlap 1223933 1223943, overlap 1223943 CTATCAAAGCTAAAA GAAAAGGCTAATTCT CAAT AAAATTAGCCTTTTC TAATACTATTATTGT TERM 1514 1223943 - 1223966 + r 76 -6.8 -4.50583 | opp_overlap 1223943 1223938, overlap 1223933 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTATT TERM 1515 1223966 - 1223943 - R 95 -9 -5.14698 | opp_overlap 1223933 1223943, overlap 1223938 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTATT arcC 1225053 - 1224103 - | carbamate kinase M5005_Spy_1271 1226404 - 1225073 - | hypothetical protein M5005_Spy_1272 1227914 - 1226421 - | arginine/ornithine antiporter TERM 1516 1227990 - 1227944 - R 83 -7.5 -4.83169 | gap 2, opp_overlap 1227944 1227947, overlap 1227947 ACCTTTTCATAAAAA TAAGCCGTTCTAGTT-CCG-GTC AAG GACGCGAAAACCAGAACGACTTG TCATGTAGTTAAAGT TERM 1517 1227987 - 1227947 - R 93 -9.2 -4.52873 | gap 2, opp_overlap 1227944 1227947, overlap 1227944 TTTTCATAAAAATAA GCCGTTCTAGTT-CCG-GTC AAG GACGCGAAAACCAGAACGAC TTGTCATGTAGTTAA arcB 1229097 - 1228084 - | ornithine carbamoyltransferase M5005_Spy_1274 1229565 - 1229137 - | acetyltransferase TERM 1518 1229221 - 1229234 + g 71 -5.3 -4.56775 | GTCCATATTCTTCTC CCATT TAAG AATGG TTTTTGCAAGGGACT arcA 1230900 - 1229665 - | arginine deiminase TERM 1519 1230120 - 1230133 + g 70 -3.1 -4.87803 | overlap 1230121 CAAAGGCCAATACTT TCTTG AAGC CAAGG TTTTGTTTAAAGATG TERM 1520 1231028 - 1231046 + r 70 -3.8 -4.855 | overlap 1231023 GCTATTTTGAGTAAT CGCTTACA TTT TTTGAGCG TTGTTTTTATTTTTA M5005_Spy_1276 1231854 - 1231174 - | Crp family transcriptional regulator TERM 1521 1231731 - 1231741 + g 70 -3.2 -4.87318 | CTCCCTCAAAAAAAA GGAT ATG GTCC TTTTTAGCTTTTCGG ahrC.2 1231996 - 1232469 + | arginine repressor TERM 1522 1232592 - 1232549 - T 100 -10.5 -4.75404 | gap 1, opp_overlap 1232549 AAATCTCATCAAAAA GCGAGTAAACGAA-AACCTA AATGA CAGGACATTCGTTTACTCGC TTTTTGTTAACCTTC TERM 1523 1232549 - 1232592 + T 88 -7.6 -5.10208 | gap 1, opp_overlap 1232549 AAATCTCATCAAAAA GCGAGTAAACGAA-AACCT AAATGAC AGGACATTCGTTTACTCGC TTTTTGTTAACCTTC M5005_Spy_1278 1233351 - 1232635 - | hypothetical protein M5005_Spy_1279 1234444 - 1233365 - | putative cytoplasmic protein M5005_Spy_1280 1236250 - 1234517 - | two-component sensor kinase TERM 1524 1234624 - 1234639 + g 73 -7.6 -4.10161 | TGGTCATGTGGTAGC CTTCAC CATA GTGAAG TTTTAACCGCTGGTC M5005_Spy_1281 1236987 - 1236247 - | two-component response regulator TERM 1525 1236935 - 1236961 + g 73 -9.5 -3.25192 | opp_overlap 1236935, overlap 1236933 1236939 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1526 1236961 - 1236935 - G 91 -11.7 -4.12947 | opp_overlap 1236935 1236933 1236939 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1527 1237027 - 1237012 - R 73 -7.5 -3.87815 | opp_overlap 1237012 CCTTATCTTTATAAA GGGCC TTGCAT GGCCC TCTCATACTAGTCTT msrA 1238181 - 1237075 - | bifunctional methionine sulfoxide reductase A/B protein TERM 1528 1237553 - 1237576 + g 74 -3.8 -5.08601 | opp_overlap 1237559, overlap 1237545 1237559 GTCGCTTGGTTGATG TCAATATGGC AGTA GCCATTTGGA TTTTTCTTGAGGTAA tlpA 1238847 - 1238224 - | thiol:disulfide interchange protein ccdA 1239570 - 1238860 - | cytochrome c-type biogenesis protein TERM 1529 1239724 - 1239698 - R 83 -7.3 -4.69027 | opp_overlap 1239698 AAAGGCATGTAAAAA CCCGACCTC ATTAAAAGA GAGATCGGG TTCATCTTTCAATCC TERM 1530 1239759 - 1239741 - R 77 -10.3 -2.52896 | opp_overlap 1239737 1239736 TCATCTTTCAATCCA CTCACCC ATGAA GGGTGAG ACGAGTTTACTCGCT TERM 1531 1239824 - 1239806 - R 77 -10.3 -2.55551 | GACAATTTCAATCCA CTCACCC ATGAA GGGTGAG ACGCTGTGACATTGC TERM 1532 1239890 - 1239872 - R 77 -10.3 -2.57162 | AAAAATTTCAATCCA CTCACCC ATGAA GGGTGAG ACTAAAGCAAACCTA TERM 1533 1239955 - 1239937 - R 77 -10.3 -2.53995 | ACTTATTTCAATCCA CTCACCC ATGAA GGGTGAG ACCTGATGTAATTGG M5005_Spy_1285 1240466 - 1240173 - | putative cytoplasmic protein TERM 1534 1240286 - 1240266 - G 70 -2.5 -5.09762 | overlap 1240268 CCCCAATAAATAAAA GCGAATACT ATC AGTTTTCTC ATCAATGATTTGTGT M5005_Spy_1286 1241502 - 1240477 - | DNA polymerase TERM 1535 1240645 - 1240635 - G 76 -3.2 -5.25906 | ACAAATCAATAAAAA TAGC TCT GCCA TTTTCCGTCAATAAA M5005_Spy_1287 1242173 - 1241499 - | hypothetical protein M5005_Spy_1288 1243023 - 1242175 - | putative cytoplasmic protein M5005_Spy_1289 1244923 - 1243028 - | hypothetical protein M5005_Spy_1290 1245651 - 1244923 - | hypothetical protein M5005_Spy_1291 1248186 - 1245784 - | ATP-dependent RNA helicase TERM 1536 1246591 - 1246610 + g 71 -9.4 -2.85585 | opp_overlap 1246590 1246591, overlap 1246589 CATATTTGTCGAAAG CTGATAGA CCGG TCTATCAG TCATGTCTTTTAGCA TERM 1537 1246610 - 1246591 - G 70 -9.4 -2.72829 | opp_overlap 1246591 1246589, overlap 1246590 CATATTTGTCGAAAG CTGATAGA CCGG TCTATCAG TCATGTCTTTTAGCA TERM 1538 1247016 - 1247028 + g 72 -3.4 -5.07652 | AACTTGAAAAACGTC TCAG ATTAG CTGA TTTTGTTTTGAAAAG TERM 1539 1248339 - 1248316 - R 100 -10.4 -4.73613 | opp_overlap 1248319 CTATTAGTAAGAAAA GAACACAGTT TTTC AACTGCGTTC TAAACACTATGATTT valS 1250751 - 1248346 - | valyl-tRNA synthetase TERM 1540 1248454 - 1248480 + g 76 -4.4 -5.00884 | overlap 1248452 1248455 AACTTCTGGTTTGGC GTTGGCAACAAA GCG TTCGTTGCCGAG TTTTTTGCCGACCAT TERM 1541 1248729 - 1248743 + g 73 -8.6 -3.72743 | CACTATCTGCTGTCT TCACCA AAA TGGTGA TTGGTTTTGATGGTG M5005_Spy_1293 1251558 - 1250995 - | hypothetical protein M5005_Spy_1294 1251734 - 1251555 - | ribosomal-protein-serine acetyltransferase TERM 1542 1251835 - 1251846 + r 71 -3 -5.1764 | GCCGTTCTGTTTCCA CTTT GGGC AAAG TTTTTCTATTATATA TERM 1543 1251944 - 1251918 - R 100 -13.8 -4.17906 | opp_overlap 1251915 AATGAAACCAAATAA TCCCTGCCTAGA TAA CCTAGACAGGGA CGAATTTCGTGTTAC M5005_Spy_1295 1252554 - 1252159 - | putative cytoplasmic protein M5005_Spy_1296 1252826 - 1252572 - | hypothetical protein TERM 1544 1253076 - 1253103 + H 100 -9.3 -5.64274 | opp_overlap 1253076 GCATCTATAAAAAAA TACTGTCCTAA TAAGAT TTAGGGCAGTA TTTTTTTATAGCTAG TERM 1545 1253103 - 1253076 - H 93 -7.1 -5.64274 | opp_overlap 1253076 GCATCTATAAAAAAA TACTGTCCTAA TAAGAT TTAGGGCAGTA TTTTTTTATAGCTAG TERM 1546 1253340 - 1253354 + G 70 -3.6 -4.89477 | CTTTCAAAATAAGAC TTGTTC TAA GAATAA TTTTATTGTTGGACC M5005_Spy_1297 1253305 - 1254057 + | 3-deoxy-7-phosphoheptulonate synthase TERM 1547 1255158 - 1255176 + G 90 -9.6 -4.33819 | opp_overlap 1255158 1255157, overlap 1255159 AAGACGATCACCAAT TTGTCGAG AAG CTCGACAG TTTATTATAAATAGT TERM 1548 1255159 - 1255175 + G 79 -10.9 -3.19568 | opp_overlap 1255158 1255157, overlap 1255158 AGACGATCACCAATT TGTCGAG AAG CTCGACA GTTTATTATAAATAG aroB 1254113 - 1255186 + | 3-dehydroquinate synthase TERM 1549 1255408 - 1255449 + T 93 -7.4 -5.54894 | opp_overlap 1255408 1255407 1255448 ATTTCGTCTAAAAAG CCTTAATGAGAAACCTAT AAGGAG ATAGGAAACTCATTAAGG TTTTTTTAGTGAATT M5005_Spy_1299 1255613 - 1255455 - | hypothetical protein TERM 1550 1255549 - 1255581 + g 70 -9.3 -3.10597 | opp_overlap 1255554, overlap 1255554 TCGCTTTGAATACGT AAAAAGAGAAGATGA GCG TCACCTTCTCTTTTG CTTTTCCATAGGCCA TERM 1551 1255576 - 1255554 - G 95 -11.4 -4.74706 | opp_overlap 1255549 1255554 TTGAATACGTAAAAA GAGAAGATGA GCG TCACCTTCTC TTTTGCTTTTCCATA TERM 1552 1255554 - 1255576 + g 89 -9.2 -4.68645 | opp_overlap 1255554, overlap 1255549 TTGAATACGTAAAAA GAGAAGATGA GCG TCACCTTCTC TTTTGCTTTTCCATA M5005_Spy_1300 1255926 - 1255621 - | putative cytoplasmic protein M5005_Spy_1301 1256266 - 1255928 - | putative cytoplasmic protein M5005_Spy_1302 1257074 - 1256319 - | SAM-dependent methyltransferase aroE 1258187 - 1257309 - | shikimate 5-dehydrogenase lacZ 1261741 - 1258325 - | beta-galactosidase M5005_Spy_1305 1263245 - 1261761 - | two-component response regulator M5005_Spy_1306 1264969 - 1263245 - | two-component sensor kinase TERM 1553 1264134 - 1264123 - G 76 -4.4 -5.03994 | overlap 1264117 GGCCATACACAAAAA CTGT CCTG ACAG CTTCCGCTAATAAAT M5005_Spy_1307 1265564 - 1264959 - | hypothetical protein TERM 1554 1265113 - 1265099 - G 71 -5 -4.65747 | overlap 1265101 TAATTCCCAACAAAA CACTCA GCA TGAGTA AAAAGGATTTGAAAC TERM 1555 1265841 - 1265822 - R 83 -7.8 -4.81212 | CTCATCAGAAGAAAA GAGCTGAG ATTT CCCAGCCC TCAACTTATAATCAA M5005_Spy_1308 1267315 - 1265870 - | sugar-binding protein TERM 1556 1267385 - 1267368 - R 71 -5.5 -4.59027 | opp_overlap 1267356 1267369, overlap 1267369 AATGATTAGATAAAA TCTGGTC TTGT GACCAGT TCCTTAAGTCCTATT TERM 1557 1267369 - 1267384 + r 75 -9 -3.38584 | opp_overlap 1267368 1267369, overlap 1267356 ATGATTAGATAAAAT CTGGTC TTGT GACCAG TTCCTTAAGTCCTAT TERM 1558 1267384 - 1267369 - R 75 -9 -3.34332 | opp_overlap 1267356 1267369, overlap 1267368 ATGATTAGATAAAAT CTGGTC TTGT GACCAG TTCCTTAAGTCCTAT M5005_Spy_1309 1268322 - 1267396 - | sugar transport system permease protein M5005_Spy_1310 1269282 - 1268332 - | sugar transport system permease protein M5005_Spy_1311 1269478 - 1270356 + | glucokinase M5005_Spy_1312 1270500 - 1270622 + | hypothetical protein TERM 1559 1270915 - 1270871 - T 78 -7.1 -4.42062 | opp_overlap 1270873, overlap 1270873 CACTTTCCAAAGAAA TACAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTGTT TAATCATTGGTAACA TERM 1560 1270913 - 1270873 - T 83 -9.7 -3.81557 | opp_overlap 1270873, overlap 1270871 CTTTCCAAAGAAATA CAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTG TTTAATCATTGGTAA M5005_Spy_1313 1272410 - 1270968 - | beta-glucosidase hyl 1274128 - 1272434 - | hyaluronoglucosaminidase TERM 1561 1273542 - 1273556 + g 70 -8.6 -3.38522 | overlap 1273541 AGCCCTTCTTCCTTG GCTACT GCA AGTAGC TCTTTGAAATAAGTC M5005_Spy_1315 1275219 - 1274179 - | GntR family transcriptional regulator M5005_Spy_1316 1275352 - 1276638 + | hypothetical protein M5005_Spy_1317 1276653 - 1279358 + | alpha-mannosidase TERM 1562 1279396 - 1279421 + T 95 -14.1 -3.28783 | opp_overlap 1279396, overlap 1279389 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA TERM 1563 1279421 - 1279396 - T 100 -11.9 -4.74453 | opp_overlap 1279396 1279389 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA rocA 1280814 - 1279459 - | sensory transduction protein kinase TERM 1564 1279827 - 1279837 + g 74 -4 -5.10497 | TCGATACCTCAACCT TAAG CTT CTTA TTTTTTGCCTCAATT TERM 1565 1281206 - 1281217 + r 70 -4.4 -4.64846 | TGGTAATGTAACCTC CTGA CCAC TCAG TTTTCTAATTTATAG M5005_Spy_1319 1282834 - 1281479 - | tRNA (uracil-5-)-methyltransferase TERM 1566 1281778 - 1281800 + g 100 -12.8 -5.65177 | CCTCATAGTAAGCGT TGTCAAAGCC CAT GGCTTTGGCA TTTTTTTGTGCATCT TERM 1567 1282443 - 1282460 + g 79 -5.5 -4.90266 | TGAAACTGCAATTTG GCCCGAT AGTG ATCTGGC TTTTTCATTCCTAAA recX 1282949 - 1283725 + | recombination regulator RecX M5005_Spy_1321 1283805 - 1284338 + | hypothetical protein M5005_Spy_1322 1284586 - 1284437 - | hypothetical protein TERM 1568 1284516 - 1284489 - G 90 -11.4 -4.07568 | opp_overlap 1284485 1284483 1284482 TTCGTTGTGGTAAAA GTGGCGTCAA TGTTAATG TTGACGCCAC TTGGCATTTTTGAGC TERM 1569 1284581 - 1284547 - G 71 -5 -4.63527 | CTAGGATCTCAAAAA TAAGGCATGGAATTCC AAA GAAAGTCGCTGCCTTA AGCACTACCTAAGGA TERM 1570 1284623 - 1284610 - H 76 -3.9 -5.243 | GAAAGTATCAAAAAA TACTA AGTT TAGTA GCGAGGAAATCTCCG TERM 1571 1284849 - 1284839 - g 75 -5.4 -4.68724 | TCATTCAAGACAAAA CGAT ACC ATCG GCCTCAATCATCTTC M5005_Spy_1323 1284708 - 1284986 + | transposase TERM 1572 1285363 - 1285308 - f 100 -16.8 -4.86621 | opp_overlap 1285321, overlap 1285321 ATCTGCAATTAAAAA TAAACAATAAAAAGCTTAAATTTGTT ATAC AACAAATTTAAGCTTTTTATCATTAA AATACAATCAACCAA TERM 1573 1285321 - 1285350 + F 100 -13.9 -4.98255 | opp_overlap 1285308 1285321 AATAAACAATAAAAA GCTTAAATTTGTT ATAC AACAAATTTAAGC TTTTTATCATTAAAA TERM 1574 1285350 - 1285321 - f 100 -13.9 -5.44198 | opp_overlap 1285321, overlap 1285308 AATAAACAATAAAAA GCTTAAATTTGTT ATAC AACAAATTTAAGC TTTTTATCATTAAAA TERM 1575 1288199 - 1288232 + F 71 -8.9 -3.03412 | overlap 1288193 1288198 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 1576 1288891 - 1288910 + F 91 -12.2 -3.62096 | opp_overlap 1288890 1288889 CGCAGTCCTACAACC CCGAAGTG TAAA CACTTCGG TTTGCCCTCCTGCCG TERM 1577 1291174 - 1291188 + F 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC M5005_Spy_1324 1291239 - 1291373 + | hypothetical protein TERM 1578 1291653 - 1291666 + T 76 -3.9 -5.35815 | GCTATTATTTTTAGT TAGAA AAAA TTCTA TTTTTATTTGGTGTC TERM 1579 1291799 - 1291776 - T 95 -4.6 -6.20267 | opp_overlap 1291776 1291790 GGAAAAAGAAAAAAA CGCGCTTT ATATTCTG AAAACGCG CTTTTTCATATTTTT M5005_Spy_1325 1292578 - 1292030 - | ribosome-associated factor Y TERM 1580 1292595 - 1292607 + r 81 -9.1 -3.72621 | GGATACCTCTTTCTC GCGCT TGA AGCGC TTACTTTATCTTTAA comFC 1293323 - 1292658 - | COMF operon protein 3 TERM 1581 1292901 - 1292882 - GR 77 -6.4 -4.55887 | TTTCAAAAAGAGAAA GGTAGCTA ACAT TAGCTGCC TCAAGAATAGCGCTC comFA 1294509 - 1293295 - | COMF operon protein 1 TERM 1582 1294260 - 1294277 + gH 76 -2 -5.46698 | TTCCTGCACCAGTTA CAGCAT GAACTA ATGTTG TTTTTTGATTTTGCA M5005_Spy_1328 1294676 - 1295308 + | Xaa-Pro dipeptidase TERM 1583 1295325 - 1295359 + F 71 -5.2 -4.59376 | overlap 1295329 1295331 CATCAACAAAAGTGA TATGGCTTTATTATCA GAG TGATAGTAAATCTGTA TTTTACTTTAATAAT cysM 1295436 - 1296377 + | cysteine synthase TERM 1584 1296371 - 1296422 + T 88 -6.9 -5.02074 | gap 1, opp_overlap 1296382 1296384, overlap 1296382 ACCAGTAATTAAGAC GAA-ATAAAAAAGGGTTTGGAACT ACTAA GGTTCCAGACTCTTTTTAGTGTTC TTTTTTAAAAACTGC TERM 1585 1296382 - 1296410 + T 90 -8.2 -4.94672 | opp_overlap 1296382 1296384, overlap 1296371 AGACGAAATAAAAAA GGGTTTGGAACT ACTAA GGTTCCAGACTC TTTTTAGTGTTCTTT TERM 1586 1296410 - 1296382 - T 82 -3.1 -5.69793 | opp_overlap 1296382 1296371, overlap 1296384 AGACGAAATAAAAAA GGGTTTGGAAC TACTAAG GTTCCAGACTC TTTTTAGTGTTCTTT M5005_Spy_1330 1296772 - 1296395 - | hypothetical protein M5005_Spy_1331 1298172 - 1296772 - | peptidyl-prolyl cis-trans isomerase yvqC 1298850 - 1298209 - | two-component response regulator TERM 1587 1298717 - 1298697 - G 71 -4.8 -4.50058 | gap 1, overlap 1298691 1298700 GATCCATAACCAAAA CATCTGGCT TCAA AGCCA-ATG CCAAATCAACCCCTT yvqE 1299847 - 1298843 - | two-component sensor protein yvqF 1300536 - 1299844 - | transporter TERM 1588 1300612 - 1300654 + r 71 -6.5 -4.21351 | opp_overlap 1300612, overlap 1300615 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATG CCAGTAAAA CATGAGACTAACTATTC TTTGTTAAGGTGTTT TERM 1589 1300654 - 1300612 - R 83 -7.9 -4.68994 | opp_overlap 1300612 1300615 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCC AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT M5005_Spy_1335 1302557 - 1300659 - | serine/threonine protein kinase pppL 1303294 - 1302554 - | protein phosphatase 2C TERM 1590 1303088 - 1303110 + g 71 -4.8 -4.63542 | overlap 1303090 TAACCAATCTCTAAT CTGACTTAAC TCT GTGAAGTCTG TTTTTACCCATTCTC TERM 1591 1303304 - 1303316 + r 73 -7.7 -3.79251 | CTTCATACGTTTTTT CTGAC TCA GTCAG TTTCCTCCTAAAATA sunL 1304654 - 1303332 - | 16S rRNA m(5)C 967 methyltransferase TERM 1592 1303726 - 1303736 + g 70 -3.2 -4.84914 | TGACGATGAACCTCT CTGG CAT CTAG TTTTCTTGTCTCAAT fmt 1305579 - 1304644 - | methionyl-tRNA formyltransferase priA 1308025 - 1305641 - | primosome assembly protein PriA TERM 1593 1308072 - 1308094 + r 87 -6.4 -5.4111 | opp_overlap 1308072 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT TERM 1594 1308094 - 1308072 - R 95 -8.6 -5.32699 | opp_overlap 1308072 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT M5005_Spy_1340 1308407 - 1308090 - | DNA-directed RNA polymerase subunit omega gmk 1309058 - 1308423 - | guanylate kinase TERM 1595 1308721 - 1308698 - G 93 -6.8 -5.40072 | overlap 1308704 GTGGTGTTAAAAAAA CAAAAACACC ATCT GGTACTTTTG ACTTAACCTGAAGAG TERM 1596 1308715 - 1308704 - G 84 -2.2 -5.86609 | overlap 1308698 TTAAAAAAACAAAAA CACC ATCT GGTA CTTTTGACTTAACCT TERM 1597 1309168 - 1309143 - R 100 -13.5 -3.98484 | opp_overlap 1309143 1309149, overlap 1309149 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1598 1309143 - 1309168 + r 89 -13.5 -2.74012 | opp_overlap 1309143 1309149, overlap 1309149 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1599 1309149 - 1309162 + r 83 -6.7 -4.98255 | opp_overlap 1309143 1309149, overlap 1309143 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA TERM 1600 1309162 - 1309149 - R 85 -6.7 -5.38958 | opp_overlap 1309149 1309143, overlap 1309143 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA M5005_Spy_1342 1310775 - 1309168 - | hypothetical protein TERM 1601 1310285 - 1310307 + g 78 -2.8 -5.36965 | gap 1 TCTGCAATCGTCATC GCAGCAACT TTTTCC AGTT-CTGC TTTTTTCTCCTCTTC TERM 1602 1310931 - 1310918 - R 74 -2.4 -5.47218 | CCCTACTTAAAAAAA GACT GTAGCA AGTC GTCCATGATGTAGGC M5005_Spy_1343 1311801 - 1310905 - | LysR family transcriptional regulator TERM 1603 1311917 - 1311902 - H 77 -3.4 -5.52986 | opp_overlap 1311914 ACTCTATCAAAAAAA TTTATA TGCT TATAAA AATTCTATATTTTTA atoB 1312003 - 1313190 + | acetyl-CoA acetyltransferase TERM 1604 1313531 - 1313542 + G 73 -7.2 -4.13767 | ATTAGCTGAGCGCAT CCGC AGTG GCGG TTTTGGGCTAGGCGG atoD.1 1313214 - 1313864 + | acetate CoA-transferase alpha subunit atoA 1313866 - 1314525 + | acetate CoA-transferase beta subunit TERM 1605 1314830 - 1314856 + G 73 -7.5 -4.11216 | gap 1 GGTTAACAACGCAGG TCTTCAA-CATG TTGC CATGATTGAAGA TTTTCCAACTGAAAA TERM 1606 1315179 - 1315162 - g 75 -7.7 -4.09511 | overlap 1315165 AAGACCTTTCCAAAA CAAGAGG TATT CCCCTTG AAAATGTTCTTGAAG M5005_Spy_1347 1314558 - 1315337 + | 3-hydroxybutyrate dehydrogenase M5005_Spy_1348 1315408 - 1316739 + | D-beta-hydroxybutyrate permease luxS 1316813 - 1317295 + | S-ribosylhomocysteinase TERM 1607 1317402 - 1317425 + T 100 -8.2 -5.81622 | opp_overlap 1317402 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTGATTTTCT TERM 1608 1317425 - 1317402 - T 100 -10.4 -5.30155 | opp_overlap 1317402 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTGATTTTCT M5005_Spy_1350 1318909 - 1317440 - | hypothetical protein M5005_Spy_1351 1320077 - 1318923 - | methyltransferase TERM 1609 1319548 - 1319558 + g 79 -6.8 -4.57073 | ATATTTTCCTTGATC GGTG CTC CACC TTTTTGAACGCGATA TERM 1610 1320121 - 1320106 - R 95 -9 -5.04868 | TTAAATCAAATAAAA GCTAGC AAAT GCTAGC TTAACCTATTATGCA M5005_Spy_1352 1320848 - 1320522 - | cell division initiation protein M5005_Spy_1353 1321485 - 1320970 - | hypothetical protein TERM 1611 1321106 - 1321092 - G 75 -2.8 -5.24129 | opp_overlap 1321092 CTGTGTCATAAAAAA CATAAG CCC CTTCTG TCTTTTCTAATAAAA TERM 1612 1321812 - 1321780 - g 82 -7.8 -4.57569 | GCAGTCGGGCAAAAA TCGTTGAAGCGTAC TTTAG ACAAGCTTCAACGA CTGACTATTGCGGCG recU 1321566 - 1322165 + | Holliday junction-specific endonuclease pbp1A 1322152 - 1324317 + | multimodular transpeptidase-transglycosylase TERM 1613 1324449 - 1324400 - T 85 -10.3 -3.42354 | gap 1, opp_overlap 1324412, overlap 1324412 TACCTTAAGTGATAA TCTAAATAAAAAGCGAGTCCAC GTTCTGT GAGGACTCGCTTTTTATAT-GA CACAAATGACTTACC TERM 1614 1324412 - 1324438 + T 100 -10.8 -4.96848 | opp_overlap 1324400 1324412 TAATCTAAATAAAAA GCGAGTCCACGT TCT GTGAGGACTCGC TTTTTATATGACACA TERM 1615 1324438 - 1324412 - T 100 -9.4 -5.33026 | opp_overlap 1324412, overlap 1324400 TAATCTAAATAAAAA GCGAGTCCAC GTTCTGT GAGGACTCGC TTTTTATATGACACA TERM 1616 1324512 - 1324492 - T 89 -8.5 -4.29034 | AAACAAAAAACAGAA TTCTTTAAT CGT ATTAAAGAA AAGGTACAACGTTAA TERM 1617 1324658 - 1324634 - T 80 -2.8 -5.60864 | opp_overlap 1324634 TATACATGAAAAAAA CACGTTTCCA TATAC CGAAGACGTG TTTTTTCATATGTCA TERM 1618 1324634 - 1324658 + T 70 -2.1 -5.24989 | opp_overlap 1324634 TATACATGAAAAAAA CACGTTTCC ATATACC GAAGACGTG TTTTTTCATATGTCA pepC 1326121 - 1324784 - | aminopeptidase C TERM 1619 1326243 - 1326274 + r 93 -8.2 -5.57888 | opp_overlap 1326251, overlap 1326251 ATTTGATTTTCTTCA AGAAAAAAGTTAGG ATAA CCTAACTTTTTTTG TTTTCTTTTTTTACT TERM 1620 1326266 - 1326251 - R 93 -7.6 -5.4505 | opp_overlap 1326243 1326251 TTCTTCAAGAAAAAA GTTAGG ATAA CCTAAC TTTTTTTGTTTTCTT TERM 1621 1326251 - 1326266 + r 100 -7.6 -6.17669 | opp_overlap 1326251, overlap 1326243 TTCTTCAAGAAAAAA GTTAGG ATAA CCTAAC TTTTTTTGTTTTCTT nadE 1327130 - 1326306 - | NAD synthetase TERM 1622 1326530 - 1326520 - G 71 -6.8 -4.03413 | ACTTTTTCATACAAA GCAG CAT CTGC TCCTAAAACTTTCAA nadE 1328586 - 1327132 - | nicotinate phosphoribosyltransferase TERM 1623 1327624 - 1327644 + g 76 -9.1 -3.72576 | AGCACCTAAGGCAGG CTGATCATA GGC TGTGATCAG TTTGGTCCCAACACC M5005_Spy_1359 1330136 - 1328757 - | amino acid permease M5005_Spy_1360 1331222 - 1330305 - | thioredoxin reductase aapA 1331510 - 1331286 - | hypothetical protein TERM 1624 1331599 - 1331557 - R 70 -3.7 -5.00884 | gap 1, overlap 1331570 AGTTTTTCTAAAAAA CATAACAAGAAAAGCCCAGG GATA CCTAGACCTTT-TTATTATA ACAAAAGAATAACAT TERM 1625 1331587 - 1331570 - R 77 -5.5 -4.99312 | overlap 1331557 AACATAACAAGAAAA GCCCAGG GATA CCTAGAC CTTTTTATTATAACA M5005_Spy_1362 1332360 - 1331614 - | transporter M5005_Spy_1363 1333160 - 1332357 - | amino acid ABC transporter permease protein M5005_Spy_1364 1334698 - 1333355 - | ATP-dependent RNA helicase TERM 1626 1334176 - 1334155 - G 75 -10.3 -3.21593 | overlap 1334153 TAGTTGCTGAGAACA CCAAAATCT GAAC AGATTTTGG AAGCGAAGCTGCAAT mraY 1335866 - 1334856 - | phospho-N-acetylmuramoyl-pentapeptide-transferase M5005_Spy_1366 1338123 - 1335868 - | division specific D,D-transpeptidase/cell division protein ftsI TERM 1627 1337024 - 1337042 + g 73 -7.4 -4.10672 | opp_overlap 1337024 TCTGCAATTGTCAAA CCATTAGC ATT GCTAAAGG TTTCGTTTGGGTTGA ftsL 1338450 - 1338127 - | cell division protein TERM 1628 1338372 - 1338392 + g 75 -2.5 -5.30199 | opp_overlap 1338372, overlap 1338374 TAGCAGTATAAAAAG CCTTCTCAA TTC TAGAGAAAG TTTTTATTCGTTTTT mraW 1339468 - 1338455 - | S-adenosyl-methyltransferase MraW TERM 1629 1339313 - 1339290 - G 82 -8.8 -4.27512 | overlap 1339287 TTGGACAACAAATAA GCTGAGTGGC CTGA GCCACCTAGC GTCGCATCAACATAA M5005_Spy_1369 1339599 - 1339492 - | hypothetical protein TERM 1630 1339829 - 1339811 - R 87 -2.4 -6.07627 | ATCTCCAAAAAAAAA CAAAATAG CCC CAATTTCG GACAATTTTCAATTC proA 1341192 - 1339942 - | gamma-glutamyl phosphate reductase M5005_Spy_1371 1342006 - 1341185 - | gamma-glutamyl kinase TERM 1631 1342044 - 1342029 - R 85 -6.8 -5.34555 | opp_overlap 1342029 TTATAGCATAAAAAA CAGCCC CAGA GGACTG TTTTTCCGAATAATG proB 1343699 - 1342071 - | ABC transporter permease protein TERM 1632 1343535 - 1343525 - G 76 -3.2 -5.28414 | CAATAAACATAAAAA GGTA AAT CACC AAAAACATGGCAATC M5005_Spy_1373 1344438 - 1343704 - | ABC transporter ATP-binding protein M5005_Spy_1374 1344738 - 1344472 - | hypothetical protein TERM 1633 1344890 - 1344915 + r 100 -13.5 -3.695 | opp_overlap 1344890 TTTATTTTAAAAAAA CAGAGTAAATC AAAT GATTTACTCTG TTTGGGATGTTTAAC TERM 1634 1344915 - 1344890 - R 100 -13.5 -5.44119 | opp_overlap 1344890 TTTATTTTAAAAAAA CAGAGTAAATC AAAT GATTTACTCTG TTTGGGATGTTTAAC tkt 1346916 - 1344931 - | transketolase TERM 1635 1347126 - 1347098 - R 72 -8.1 -3.44124 | opp_overlap 1347098 1347115, overlap 1347096 ACGATGAATATAAGA GAGCCTGTTGACA CAG TGGCCACAGACTC TTTAGCCTTATTTTT M5005_Spy_1376 1347778 - 1347134 - | putative translaldolase TERM 1636 1347682 - 1347666 - G 71 -6.6 -4.10007 | ATAACTGTTTCAAAA TCACGT CCTTC ACGTGA GATAATGGTTGGATT M5005_Spy_1377 1349403 - 1347904 - | trans-acting positive regulator TERM 1637 1348011 - 1348001 - G 70 -5.4 -4.37092 | AGGTCTTTGAGAAAA GCTT CTA AAGC AGTGAGTTCATAGGG M5005_Spy_1378 1350739 - 1349393 - | NADH peroxidase TERM 1638 1350018 - 1350004 - G 70 -8.6 -3.27525 | overlap 1350016 TTGGCCTAAAGTTAA TGGCTA AAA TAGCCA AATCACCTTGGAAGG TERM 1639 1350836 - 1350811 - R 73 -6.9 -4.02396 | gap 1, opp_overlap 1350811, overlap 1350807 TAAAGAAAATGCAAA GGAGCTGGCCTA TGA TA-GCCAACCCC TTTAGTGATGGTTAG glpF 1351549 - 1350848 - | glycerol uptake facilitator protein glpO 1353389 - 1351551 - | alpha-glycerophosphate oxidase TERM 1640 1351604 - 1351616 + g 73 -7.7 -3.80174 | overlap 1351607 TGTCTGCAATCACGC GACGA AGA TCGTC TTCTTGTGCCACTCT glpK 1354931 - 1353405 - | glycerol kinase TERM 1641 1355182 - 1355141 - R 100 -13.2 -4.81644 | opp_overlap 1355151 CAAAGAAAATCAAAA GACCCAACAATCACTCTG CTAATC CAGAGTCATCATTGGGTC ATAAAGAGAACTAAG M5005_Spy_1382 1355684 - 1355292 - | hypothetical protein TERM 1642 1355780 - 1355810 + r 86 -10.6 -3.6943 | opp_overlap 1355782 1355788, overlap 1355782 1355788 ACAGTCATCACGATA AACAAAAAGCAGTT CAG AGCTGCTTTTTGTC TTATGATTTTGGGTC TERM 1643 1355782 - 1355808 + r 93 -13.2 -3.41757 | opp_overlap 1355782 1355788, overlap 1355780 1355788 AGTCATCACGATAAA CAAAAAGCAGTT CAG AGCTGCTTTTTG TCTTATGATTTTGGG TERM 1644 1355808 - 1355782 - R 93 -11 -3.99592 | opp_overlap 1355782 1355780 1355788, overlap 1355788 AGTCATCACGATAAA CAAAAAGCAGTT CAG AGCTGCTTTTTG TCTTATGATTTTGGG TERM 1645 1355802 - 1355788 - R 82 -4.2 -5.40464 | opp_overlap 1355782 1355780 1355788, overlap 1355782 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTGTCTTATGAT TERM 1646 1355788 - 1355802 + r 84 -6.4 -5.16133 | opp_overlap 1355788 1355782, overlap 1355782 1355780 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTGTCTTATGAT M5005_Spy_1383 1356068 - 1355811 - | hypothetical protein glyS 1358261 - 1356222 - | glycyl-tRNA synthetase subunit beta TERM 1647 1356978 - 1356996 + g 72 -9.6 -3.02511 | GTAGTGTTCACGGAT TGCTGTTG CCA CAGCAGCA TCTTCACCAGCTAGA TERM 1648 1358455 - 1358429 - R 82 -9.6 -3.6502 | opp_overlap 1358435, overlap 1358430 1358435 TAGGGGGGACGCAAA GTGAAATTATCC AGT GGATAATTTCAG AAAACAAAAGTGTTC TERM 1649 1358454 - 1358430 - R 87 -13.1 -2.78798 | opp_overlap 1358435, overlap 1358429 1358435 AGGGGGGACGCAAAG TGAAATTATCC AGT GGATAATTTCA GAAAACAAAAGTGTT TERM 1650 1358449 - 1358435 - R 70 -7.2 -3.85909 | opp_overlap 1358435, overlap 1358430 1358429 GGACGCAAAGTGAAA TTATCC AGT GGATAA TTTCAGAAAACAAAA TERM 1651 1358561 - 1358583 + r 73 -7.6 -3.74762 | overlap 1358562 CGGGAGTAACCTTGA CTCGGCGACC TTC GGTCGCCCAC TTCTTGCTCGCTCTT TERM 1652 1358562 - 1358582 + r 81 -11.1 -2.84134 | overlap 1358561 GGGAGTAACCTTGAC TCGGCGACC TTC GGTCGCCCA CTTCTTGCTCGCTCT glyQ 1359556 - 1358639 - | glycyl-tRNA synthetase subunit alpha TERM 1653 1359720 - 1359671 - R 100 -17.3 -5.1675 | CTAGGCACCAAAAAA CCGCATTTTGATGCTCCTAAATC ATAA GACCTAGGGGCGTCAAAACGCGG TTCCACCCTAATTTA M5005_Spy_1386 1360461 - 1359928 - | hypothetical protein TERM 1654 1360373 - 1360383 + g 72 -3.2 -5.10877 | overlap 1360362 TCCTGTCCTCCTTGG GCTA ATA TGGC TTTTTCATTTGTTAT TERM 1655 1360558 - 1360581 + r 71 -6.8 -4.10331 | opp_overlap 1360558 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTAGTTCCTTAA TERM 1656 1360581 - 1360558 - R 83 -6.8 -5.00884 | opp_overlap 1360558 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTAGTTCCTTAA M5005_Spy_1387 1361432 - 1360593 - | aldo/keto reductase TERM 1657 1361549 - 1361502 - R 70 -2 -5.22481 | CATAAAGAAAGAAAA TACAAAAAGAATTGGCCTGCCA GACA TAGCTACCCCAATCCTTTTGTA TCTCTTAGGCATCAA nagA 1362702 - 1361554 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1658 1362783 - 1362814 + r 100 -9.6 -5.42259 | opp_overlap 1362785 1362790, overlap 1362785 TTTTGGGATTCAAAA AAGAAAACGTGGAT GATC ATTCACGTTTTCTC TTTTTTTAAAGCTGG TERM 1659 1362785 - 1362812 + r 100 -12.2 -4.35085 | opp_overlap 1362785 1362790, overlap 1362783 TTGGGATTCAAAAAA GAAAACGTGGAT GATC ATTCACGTTTTC TCTTTTTTTAAAGCT TERM 1660 1362812 - 1362785 - R 100 -10 -5.08824 | opp_overlap 1362785 1362783, overlap 1362790 TTGGGATTCAAAAAA GAAAACGTGGAT GATC ATTCACGTTTTC TCTTTTTTTAAAGCT TERM 1661 1362807 - 1362790 - R 82 -4.1 -5.43553 | opp_overlap 1362785 1362783, overlap 1362785 ATTCAAAAAAGAAAA CGTGGAT GATC ATTCACG TTTTCTCTTTTTTTA M5005_Spy_1389 1364469 - 1362820 - | sodium-dependent phosphate transporter TERM 1662 1364411 - 1364398 - G 72 -4.5 -4.70515 | GATACTGAAAAGAAA GAGAC CTAA GCCTC CAAAGAAATGAAATG M5005_Spy_1390 1364653 - 1365375 + | hypothetical protein M5005_Spy_1391 1366346 - 1365504 - | degV family protein TERM 1663 1365706 - 1365716 + g 100 -6.8 -5.75342 | opp_overlap 1365705 ATTTCTTCTATCAAG GCAG AAA CTGC TTTTTTTTGACCACG TERM 1664 1366978 - 1366966 - g 88 -7.7 -5.16572 | ACTGAAGCTAAAAAA GAAGC TCA GCTTC TTAAAATGATTTTCA M5005_Spy_1392 1366639 - 1367196 + | TetR family transcriptional regulator TERM 1665 1367181 - 1367237 + T 100 -12 -4.62069 | gap 2, opp_overlap 1367192 1367200, overlap 1367183 1367188 1367200 GGCTGCTATGGGCTT GCCT--CTATTAACGTAAAAAGGTTCCT TTT GGGAACCTTTTTACGTTAATTGTTAGTC TTTTTGAGCTACAAG TERM 1666 1367183 - 1367235 + T 100 -13.2 -3.92746 | gap 2, opp_overlap 1367192 1367200, overlap 1367181 1367188 1367200 CTGCTATGGGCTTGC CT--CTATTAACGTAAAAAGGTTCCT TTT GGGAACCTTTTTACGTTAATTGTTAG TCTTTTTGAGCTACA TERM 1667 1367188 - 1367228 + T 100 -22.3 -3.91821 | opp_overlap 1367192 1367200, overlap 1367183 1367181 1367200 ATGGGCTTGCCTCTA TTAACGTAAAAAGGTTCCT TTT GGGAACCTTTTTACGTTAA TTGTTAGTCTTTTTG TERM 1668 1367224 - 1367192 - T 100 -18 -3.14132 | opp_overlap 1367188 1367183 1367181 1367200, overlap 1367200 GCTTGCCTCTATTAA CGTAAAAAGGTTCC TTTTG GGAACCTTTTTACG TTAATTGTTAGTCTT TERM 1669 1367216 - 1367200 - T 86 -8 -4.7629 | opp_overlap 1367188 1367183 1367181 1367200, overlap 1367192 CTATTAACGTAAAAA GGTTCC TTTTG GGAACC TTTTTACGTTAATTG TERM 1670 1367200 - 1367216 + T 93 -8.7 -4.77896 | opp_overlap 1367200 1367192, overlap 1367188 1367183 1367181 CTATTAACGTAAAAA GGTTCCT TTT GGGAACC TTTTTACGTTAATTG M5005_Spy_1393 1368056 - 1367232 - | HAD superfamily hydrolase M5005_Spy_1394 1368675 - 1368058 - | hypothetical protein TERM 1671 1368795 - 1368767 - R 100 -11.2 -5.37345 | opp_overlap 1368771 TGTAAGGATAAAAAA GCAAGGATAAAA CCCAT TTTCATCCTTGC TACAAAAGATTCAAA lacD.1 1369849 - 1368872 - | tagatose 1,6-diphosphate aldolase M5005_Spy_1396 1370349 - 1369999 - | tagatose-6-phosphate kinase lacB.1 1370874 - 1370359 - | galactose-6-phosphate isomerase subunit LacB TERM 1672 1370574 - 1370560 - G 77 -8.6 -3.79251 | opp_overlap 1370559 GATTTTACCACCAAA GCCAAT CAC ATTGGC ATTCAATTCTTCCTT lacA.1 1371314 - 1370889 - | galactose-6-phosphate isomerase subunit LacA TERM 1673 1371465 - 1371433 - R 77 -10 -3.02144 | gap 1, opp_overlap 1371431, overlap 1371437 TTATTTCTTTCAAGA CAAAGCACT-TGTGG GTTC CCACAGAGCGCCTTG CCTTACATGAGAAAT TERM 1674 1371461 - 1371437 - R 75 -7.2 -4.1891 | gap 1, opp_overlap 1371431, overlap 1371433 TTCTTTCAAGACAAA GCACT-TGTGG GTTC CCACAGAGCGC CTTGCCTTACATGAG TERM 1675 1371493 - 1371526 + r 100 -19.9 -5.1675 | opp_overlap 1371504 AATACTCTTTTCACG TTAGGGAGTAAGGTA GAAA TACCTTACTCCCTAA TTTTTTAGTCAGTCA M5005_Spy_1399 1373002 - 1371554 - | PTS system, galactose-specific IIC component M5005_Spy_1400 1373336 - 1373031 - | PTS system, galactose-specific IIB component M5005_Spy_1401 1373802 - 1373329 - | PTS system, galactose-specific IIA component TERM 1676 1373599 - 1373627 + g 73 -10.4 -2.88427 | CAAGCAATACTTGGT TTCTGTATGCGG AATAG CCGCATACAAAA TATCTGACCCATCTT TERM 1677 1374656 - 1374645 - g 72 -4.4 -4.67011 | overlap 1374648 AATTCTATTGAAAAA TACC TCTT GGTA GATAACCAAAAATTC lacR.1 1374039 - 1374809 + | lactose phosphotransferase system repressor M5005_Spy_1403 1375006 - 1374836 - | copper chaperone copZ 1375216 - 1375013 - | copper chaperone copA 1377461 - 1375230 - | copper-exporting ATPase TERM 1678 1377204 - 1377226 + g 77 -8.4 -3.80569 | overlap 1377190 1377206 AGACCAAATAACCTT TAGGTCTTCG TCA CGACGACCTG TTTGCATGTGTTTTG TERM 1679 1377206 - 1377224 + g 72 -8.8 -3.46904 | overlap 1377190 1377204 ACCAAATAACCTTTA GGTCTTCG TCA CGACGACC TGTTTGCATGTGTTT copY 1377895 - 1377461 - | copAB ATPase metal-fist type repressor M5005_Spy_1407 1378067 - 1379053 + | esterase TERM 1680 1379077 - 1379093 + T 100 -8 -6.04378 | ATAACTCCTACCTGC CACCAG TTAAT CTGGTG TTTTTTTTGTAGTTT TERM 1681 1379157 - 1379133 - T 100 -13.7 -5.03201 | opp_overlap 1379133 AATAACAATTAAAAA GAGCCCTATCA TAA TGATAAGGCTC TTTCTGTCATAACAT TERM 1682 1379133 - 1379157 + T 100 -11.5 -4.08974 | opp_overlap 1379133 AATAACAATTAAAAA GAGCCCTATCA TAA TGATAAGGCTC TTTCTGTCATAACAT rbfA 1379543 - 1379187 - | ribosome-binding factor A TERM 1683 1379449 - 1379465 + g 73 -2.1 -5.24531 | overlap 1379450 1379451 ATCGTTACTCCCTGA ACGCGTG GAT CACGCAC TTTTTTCTGAAGAAT TERM 1684 1379592 - 1379564 - R 100 -12.5 -4.16943 | opp_overlap 1379569, overlap 1379569 TTCCACATTTTAAAA CAAAAGCTAGGCT GAA AGCCCAGCTTATG ACATTGCTACCTGTT TERM 1685 1379587 - 1379569 - R 100 -11 -5.09259 | opp_overlap 1379569, overlap 1379564 CATTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGCTAC TERM 1686 1379569 - 1379587 + r 75 -8.8 -3.37464 | opp_overlap 1379569 1379564 CATTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGCTAC infB 1382603 - 1379742 - | translation initiation factor IF-2 TERM 1687 1380451 - 1380464 + g 84 -8.1 -4.72986 | GATCGCTCCTCACCA GCTGC ACGC GCAGC TTTTTCATCAGCGTA M5005_Spy_1410 1382925 - 1382623 - | hypothetical protein M5005_Spy_1411 1383214 - 1382918 - | putative cytoplasmic protein nusA 1384387 - 1383230 - | transcription elongation factor NusA M5005_Spy_1413 1385098 - 1384562 - | hypothetical protein TERM 1688 1385131 - 1385110 - R 93 -8.7 -4.68724 | opp_overlap 1385100 1385110 CCACTTAATACAAAA GTGGCGAGA CATA TCCCACCAC CTTTCTGTATTATTT M5005_Spy_1414 1385522 - 1385343 - | phage protein TERM 1689 1385678 - 1385703 + H 80 -2.9 -5.72207 | gap 1, opp_overlap 1385684, overlap 1385673 1385684 TAGTATGCTGTTAGT TAT-AAATTAAT TTT ATTAATTTCATA TTTTTTTAATTTAAA sdaD2 1385761 - 1386933 + | phage-encoded streptodornase TERM 1690 1387037 - 1387016 - T 100 -9.4 -5.51046 | opp_overlap 1387011 1387016 GAAACACACAAAAAA CCGCCCTC AATCAA GAGAGCGG TTTTGTCTTATCTAA TERM 1691 1387016 - 1387037 + T 83 -7.2 -4.76963 | opp_overlap 1387016, overlap 1387011 GAAACACACAAAAAA CCGCCCTC AATCAA GAGAGCGG TTTTGTCTTATCTAA M5005_Spy_1416 1388245 - 1387049 - | phage-associated cell wall hydrolase M5005_Spy_1417 1388541 - 1388356 - | phage protein M5005_Spy_1418 1388837 - 1388538 - | phage protein TERM 1692 1388716 - 1388744 + g 85 -6.8 -5.00884 | gap 1 GAGTCCTTGAGTTGA GCCATGGCAAACT CATT AGCTT-CCATGGC TTTTTTAAAAGGCGT TERM 1693 1388819 - 1388786 - G 84 -6.8 -4.93696 | gap 2, opp_overlap 1388805, overlap 1388795 TCCAAAGACCAAAAA CAGACATGAGAGCCGC TGCC GCAGCTC-C-TGCCTG TAGTAAATCAAAGTG M5005_Spy_1419 1389468 - 1388848 - | phage protein M5005_Spy_1420 1389632 - 1389471 - | phage protein M5005_Spy_1421 1391548 - 1389641 - | phage infection protein TERM 1694 1391000 - 1391012 + g 74 -9.1 -3.58037 | overlap 1391008 GTCGTTTTTATCATT GGCCA TTG TGGCC TTTAGGCCGTTAATG M5005_Spy_1422 1392194 - 1391559 - | phage protein TERM 1695 1392110 - 1392096 - G 74 -5 -4.67608 | TATCTTAATATAAAA TTGGTC GAC AACCAA ACTGGCTTTTTGTAA M5005_Spy_1423 1393249 - 1392194 - | hyaluronoglucosaminidase TERM 1696 1392867 - 1392885 + g 72 -3.1 -5.13473 | CTATCCCCTTTTTGG CCATTAG GGATA CTAAAGG TTTTTTGAGTGTCAT M5005_Spy_1424 1395228 - 1393246 - | phage endopeptidase TERM 1697 1393298 - 1393332 + g 77 -8.6 -3.87373 | opp_overlap 1393331 TTGCTTGATTGTTTA GCTGTGATTGTTGC ACCTTTA GCATCAACCACAGC TTTATAAGCCATATC M5005_Spy_1425 1396080 - 1395238 - | phage protein TERM 1698 1396055 - 1396033 - G 79 -8.5 -4.05181 | opp_overlap 1396031 1396033 ATTATAAATACCAAA GTCAGACAA TCTAG TTGCCTGAC TCTCTTTTTCTATTA M5005_Spy_1426 1400474 - 1396092 - | phage protein TERM 1699 1396463 - 1396483 + g 73 -10.5 -2.77678 | overlap 1396460 1396473 1396478 1396479 GAGCGCGTCTAATTG TTGCTGCTA CGT TAGCGGCAA TGCTGTTAGCTATTG TERM 1700 1397640 - 1397608 - G 82 -8.6 -4.14397 | opp_overlap 1397603 1397618 AGTCCAGAAACTAAA GACTGTATAATCTG TACAG CAGATTGTACAATC TGGGGTAGATTTTGA M5005_Spy_1427 1400722 - 1400489 - | phage protein TERM 1701 1400558 - 1400569 + g 72 -4.4 -4.74132 | overlap 1400556 ATCACTATCGGCTTG GCTA CGGC TAGC TTTTTGATACGATCT M5005_Spy_1428 1401252 - 1400797 - | phage protein TERM 1702 1401300 - 1401279 - R 93 -9.3 -4.54727 | opp_overlap 1401280, overlap 1401280 CTTTTTAAATCAAAA TGGGGCAGC AGTT GCCGCCCCT GTGTACTACTTAGTG TERM 1703 1401299 - 1401280 - R 91 -12.8 -3.32354 | opp_overlap 1401280, overlap 1401279 TTTTTAAATCAAAAT GGGGCAGC AGTT GCCGCCCC TGTGTACTACTTAGT TERM 1704 1401280 - 1401299 + r 80 -10.6 -2.98282 | opp_overlap 1401279 1401280 TTTTTAAATCAAAAT GGGGCAGC AGTT GCCGCCCC TGTGTACTACTTAGT M5005_Spy_1429 1401905 - 1401306 - | phage protein TERM 1705 1401784 - 1401803 + g 83 -6.4 -5.0538 | TCGGTACGATAGGCT GGCAGCAA AGCC TTGCTACC TTTTTTAGCATCAAC M5005_Spy_1430 1402276 - 1401917 - | phage protein TERM 1706 1402138 - 1402101 - G 77 -7.8 -4.15006 | opp_overlap 1402111 1402113 ATATTCAGGCTAAAA TCGTCAATAACTGCTC CAGTTT GAGCTGTTTTTGACAA GTCTGATATATTTGT TERM 1707 1402203 - 1402232 + g 80 -4.4 -5.32608 | gap 1, opp_overlap 1402203 TTAGGCAATTTAAAA TAGATTGGTATGC CTAAA GC-TCCCAATCTA TTTTTTACCTTTTTT M5005_Spy_1431 1402606 - 1402280 - | phage protein M5005_Spy_1432 1402899 - 1402621 - | phage protein M5005_Spy_1433 1403266 - 1402910 - | phage protein M5005_Spy_1434 1404165 - 1403278 - | phage protein TERM 1708 1403736 - 1403757 + g 71 -3.7 -4.90918 | overlap 1403737 ATGCAGACAGCGCTT TTTGAAGGC CAAC GCCTTTAAC TTTTGTTGGTTTTGT M5005_Spy_1435 1404747 - 1404178 - | phage scaffold protein TERM 1709 1404868 - 1404853 - R 77 -5.4 -4.84311 | opp_overlap 1404853 1404848 1404865, overlap 1404848 TTGGACACAATAAAA GCCGTA TTGC TACGAC TTTGATTTCTAAAGG M5005_Spy_1436 1405169 - 1404903 - | phage protein M5005_Spy_1437 1405360 - 1405172 - | hypothetical protein TERM 1710 1405340 - 1405396 + g 73 -5.7 -4.56153 | opp_overlap 1405340 AATTGAGATAAAGAA GGATGATGGTCTAACGCCCACGAAGCA GTT TACTGTGGAGGCGGTGGGGCATCATCC TTCTTTTTCTAATAC M5005_Spy_1438 1406830 - 1405391 - | phage protein TERM 1711 1405490 - 1405518 + gr 80 -4.6 -5.24796 | AATTTGTTCTAACTG CCCCATTATC TCTTCAAAT GATAAAGGGG TTTTTGTTATATCAA M5005_Spy_1439 1408328 - 1406796 - | portal protein M5005_Spy_1440 1409621 - 1408344 - | terminase large subunit TERM 1712 1408874 - 1408849 - G 100 -4.8 -5.72207 | opp_overlap 1408852, overlap 1408852 TCCAAACCAAAAAAA GAAGACAAGT GTGATA ACTTGTCTTT GTTTAATATTTGCTT TERM 1713 1408871 - 1408852 - G 82 -6.5 -4.90519 | opp_overlap 1408852, overlap 1408849 AAACCAAAAAAAGAA GACAAGT GTGATA ACTTGTC TTTGTTTAATATTTG TERM 1714 1408852 - 1408871 + g 77 -6.5 -4.59293 | opp_overlap 1408852 1408849 AAACCAAAAAAAGAA GACAAGT GTGATA ACTTGTC TTTGTTTAATATTTG M5005_Spy_1441 1410105 - 1409611 - | phage terminase small subunit TERM 1715 1409773 - 1409788 + g 70 -3.2 -4.93661 | overlap 1409775 CTGGCCAAACTCTCC AACGCT AATG AGCGTC TTTTCTTGTTGGTCT TERM 1716 1409911 - 1409928 + g 73 -9.9 -3.10732 | TTTAATGTCAGGTTT GGTCAAG TTTT CTTGACC TATTGACCTTGCTGT TERM 1717 1410094 - 1410072 - G 87 -6.3 -5.24416 | opp_overlap 1410072 CAAGCATAACAAAAA GGCAAGACA CTATT TGCCTTACC TTTAAACTCATACTA M5005_Spy_1442 1410569 - 1410153 - | phage transcriptional activator M5005_Spy_1443 1410757 - 1410566 - | phage protein M5005_Spy_1444 1411598 - 1410747 - | adenine-specific methyltransferase M5005_Spy_1445 1411873 - 1411607 - | phage protein M5005_Spy_1446 1412037 - 1411870 - | phage protein M5005_Spy_1447 1413360 - 1412038 - | phage-related DNA helicase TERM 1718 1412595 - 1412607 + g 73 -7.7 -3.95621 | opp_overlap 1412594 1412595, overlap 1412597 ACTCCAACACCAAAT CAGCT TCA AGCTG TTTGTAAGCTTTCAT M5005_Spy_1448 1413632 - 1413357 - | hypothetical protein TERM 1719 1413888 - 1413905 + r 73 -4.1 -4.86862 | opp_overlap 1413888 CGAGTTACTAAGTTA CCGATTT TTCC AATTCGG TTTTGGTTTTTTAAA TERM 1720 1413915 - 1413933 + r 93 -6.2 -5.93252 | overlap 1413912 1413930 ATTCGGTTTTGGTTT TTTAAAAA TTA TTTTTAAA TTTTTTATTTTTAAA M5005_Spy_1449 1416403 - 1414019 - | DNA primase TERM 1721 1415153 - 1415173 + g 74 -3.9 -5.06451 | overlap 1415154 CTTCAAATATTCCTC AGCGTTTGG CAA CCAGATGCC TTTTTTAGCGTCGTA M5005_Spy_1450 1418330 - 1416408 - | phage-encoded DNA polymerase TERM 1722 1418371 - 1418347 - R 76 -6.4 -4.56597 | gap 1, opp_overlap 1418348 1418351, overlap 1418348 CCTCTCCTTTAAAAA TGAGGAGCCTC TAAA GAGGC-CCTCT ACTATAAAATGTCGT TERM 1723 1418370 - 1418348 - R 81 -9.9 -3.33744 | gap 1, opp_overlap 1418348 1418351, overlap 1418347 CTCTCCTTTAAAAAT GAGGAGCCTC TAAA GAGGC-CCTC TACTATAAAATGTCG TERM 1724 1418348 - 1418370 + r 75 -9.9 -2.64243 | gap 1, opp_overlap 1418348 1418347, overlap 1418351 CTCTCCTTTAAAAAT GAGGAGCCTC TAAA GAGGC-CCTC TACTATAAAATGTCG M5005_Spy_1451 1418930 - 1418373 - | phage protein M5005_Spy_1452 1419339 - 1418941 - | phage protein M5005_Spy_1453 1420497 - 1419343 - | phage protein M5005_Spy_1454 1420796 - 1420497 - | phage protein TERM 1725 1420619 - 1420630 + g 75 -5.8 -4.75472 | TCCCTTCTTCAACCT TGGC TTTA GCCA TTTTCTTAATATCAG TERM 1726 1420843 - 1420861 + r 100 -9.6 -5.15634 | TTGTGTATAATTGTT GACGGTTT CCT AAGCCGTC TTTTTTGATGCAATC M5005_Spy_1455 1421087 - 1420884 - | phage protein M5005_Spy_1456 1421236 - 1421084 - | phage protein M5005_Spy_1457 1421619 - 1421233 - | phage protein M5005_Spy_1458 1421819 - 1421616 - | phage protein M5005_Spy_1459 1421982 - 1421812 - | phage protein M5005_Spy_1460 1422254 - 1421979 - | phage protein TERM 1727 1422285 - 1422304 + r 87 -6.4 -5.40625 | opp_overlap 1422285 ATATGTTTTAGCTAA GTCACTGT TCCA GCAGTGGC TTTTTTGTGTACTAT M5005_Spy_1461 1422531 - 1422316 - | phage protein TERM 1728 1422748 - 1422737 - g 78 -3 -5.48825 | TACTATCGAAAAAAA TCAT AGTA ATGA CCTAGAAAGGCTTGA TERM 1729 1422828 - 1422803 - g 76 -2 -5.47821 | AGCTATGGAAAAAAA TCATTTTC GAGAACTTGA GAAAATGA AAGAAGCTCACACTT M5005_Spy_1462 1422579 - 1422992 + | phage protein M5005_Spy_1463 1423128 - 1422973 - | phage protein TERM 1730 1423147 - 1423160 + H 100 -8.1 -5.7946 | ACTCTCTCCTTTCTA CTCCC AATC GGGAG TTTTTTTATTAAAAG M5005_Spy_1464 1423403 - 1423804 + | Cro/CI family phage transcriptional regulator TERM 1731 1423928 - 1423914 - g 78 -2.8 -5.45652 | overlap 1423920 ATGTTTAATAAAAAA CACAAC GTC ATTGCG ATTGACACCTATCTT M5005_Spy_1465 1423818 - 1424201 + | phage protein TERM 1732 1424316 - 1424302 - g 86 -2.1 -5.87996 | gap 1, overlap 1424303 GAACTAAGAAAAAAA GC-CTC ACAA GAGAGC AAAATAATCCTACCC M5005_Spy_1466 1424212 - 1424763 + | phage protein TERM 1733 1424794 - 1424770 - f 95 -4.2 -6.23545 | gap 1 TTTAAATAAAAAAAA CCCCACGCTCA AATT TG-GCGAGGAG AGCGTGAGGCAAAAC TERM 1734 1425772 - 1425742 - g 86 -7.7 -4.95896 | gap 1 ACAAAGTTATAAAAA GAGTGACTGG-CAG AAAT CTAACCAATCACTC GCTAAGGCATACTTA TERM 1735 1425924 - 1425911 - g 100 -6.7 -6.09196 | TTTAAAAGAAAAAAA TGACC ATCA GGTCA AAAACATTTTTCAAA int.3 1424880 - 1425959 + | phi5005.3 integrase trmB 1426792 - 1426157 - | tRNA (guanine-N(7))-methyltransferase TERM 1736 1426325 - 1426335 + g 73 -6.8 -4.15854 | GTACTCAAACAAGCC CCGA TTA TCGG TTTTAAAATGAATTT M5005_Spy_1469 1427583 - 1426792 - | phosphotransferase family protein M5005_Spy_1470 1428681 - 1427647 - | protein ecsB M5005_Spy_1471 1429409 - 1428684 - | ABC-type transporter ATP-binding protein TERM 1737 1429634 - 1429663 + G 100 -14.5 -3.8505 | gap 1, opp_overlap 1429636 1429638 GTTCGTAACTTACTA GAGATGACT-GCTG AGA CAGCTAGTCATCTC TTTGCTCGTATTCCT TERM 1738 1429661 - 1429636 - g 80 -11.3 -2.82933 | gap 1, opp_overlap 1429634, overlap 1429638 TCGTAACTTACTAGA GATGACT-GCTG AGA CAGCTAGTCATC TCTTTGCTCGTATTC hit 1429481 - 1429900 + | bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) M5005_Spy_1473 1429897 - 1430253 + | hypothetical protein TERM 1739 1430314 - 1430289 - T 74 -9.1 -3.01497 | opp_overlap 1430289, overlap 1430291 1430293 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1740 1430289 - 1430314 + T 100 -9.1 -5.47159 | opp_overlap 1430289 1430291 1430293 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1741 1430376 - 1430353 - T 100 -11 -5.19879 | opp_overlap 1430353 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA TERM 1742 1430353 - 1430376 + T 87 -11 -3.36273 | opp_overlap 1430353 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA lytR 1431638 - 1430364 - | LytR family transcriptional regulator M5005_Spy_1475 1432171 - 1431647 - | acetyltransferase M5005_Spy_1476 1432607 - 1432146 - | ATP/GTP hydrolase TERM 1743 1432659 - 1432632 - R 91 -2.8 -6.00086 | gap 1, overlap 1432636 ATATCAGAAAAAAAA CATACTTCCAAGC ACT ACCTAGAAG-ATG ACTCCAATAAGGTAT TERM 1744 1432728 - 1432689 - R 70 -3.9 -4.98531 | gap 1 TTCGTAAAGTAAAAA CGCTTCTTTATATTAA AGGTTAAAA TCAAT-TAAAGAAGCG GCAGTTAGTAGCAAA M5005_Spy_1477 1434221 - 1432761 - | guanine-hypoxanthine permease TERM 1745 1434304 - 1434341 + H 91 -12.4 -3.20063 | opp_overlap 1434334 TTGACACCTCATTAT TATTGTTATTGTTCGT ATTAAA ATGAACAATAACAATA TGTTACCATTTTTTT M5005_Spy_1478 1434485 - 1435297 + | HAD superfamily hydrolase TERM 1746 1435310 - 1435333 + F 82 -9 -4.06864 | opp_overlap 1435310 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTCTTCTTCTGTCAA TERM 1747 1435333 - 1435310 - f 71 -6.8 -4.11623 | opp_overlap 1435310 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTCTTCTTCTGTCAA manL 1435649 - 1436641 + | PTS system, mannose-specific IIAB component manM 1436730 - 1437539 + | PTS system, mannose-specific IIC component TERM 1748 1437931 - 1437941 + G 71 -6.8 -4.0098 | CGTCCTATCCTTGGG GCAC TTG GTGC TTCTTTGGCTTCAAC manN 1437556 - 1438467 + | PTS system, mannose-specific IID component TERM 1749 1438478 - 1438502 + F 100 -10.8 -5.43621 | opp_overlap 1438477 1438481 TGTAATCAACCAATG GAAGTCTGAG ATGAA CTCAGGCTTC TTTTTTATGCTTTAT manO 1438581 - 1438940 + | putative cytoplasmic protein serS 1439332 - 1440609 + | seryl-tRNA synthetase TERM 1750 1440651 - 1440614 - T 71 -5.6 -4.58585 | opp_overlap 1440618, overlap 1440618 CACCTAAATAATAAA TTCACCCCAGAGATCA TTAAAG TGATTTCTGGGGTTTA CTATTTTAAAGAGCC TERM 1751 1440647 - 1440618 - T 81 -10.8 -2.82317 | opp_overlap 1440618, overlap 1440614 TAAATAATAAATTCA CCCCAGAGATCA TTAAAG TGATTTCTGGGG TTTACTATTTTAAAG TERM 1752 1440618 - 1440647 + T 100 -13.7 -4.07678 | opp_overlap 1440618 1440614 TAAATAATAAATTCA CCCCAGAGATCAT TAAA GTGATTTCTGGGG TTTACTATTTTAAAG accD 1441601 - 1440831 - | acetyl-CoA carboxylase subunit alpha TERM 1753 1441500 - 1441489 - G 73 -5.8 -4.63527 | CCATCATCTGAAAAA TGGC GATC GCCA TGCAGTTCCATAAAG accA 1442464 - 1441598 - | acetyl-CoA carboxylase subunit beta accC 1443837 - 1442473 - | acetyl-CoA carboxylase biotin carboxylase subunit fabZ 1444291 - 1443869 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 1754 1443985 - 1444009 + g 70 -2.8 -5.09426 | AGGTTGCTGTCATCA CAAGTTGATC ACCAG GGACGACTTG TTTTTTGAACTTCAC accB 1444788 - 1444288 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 1755 1444614 - 1444650 + g 95 -13.1 -3.59402 | opp_overlap 1444620, overlap 1444617 AAGCAGTTGGATTCG GAACAAGTTGTACCTGT GGT ACAGGCACAGCATGTTC TTGATTTGATGTCGA TERM 1756 1444617 - 1444647 + g 79 -9 -3.92143 | opp_overlap 1444620, overlap 1444614 CAGTTGGATTCGGAA CAAGTTGTACCTGT GGT ACAGGCACAGCATG TTCTTGATTTGATGT TERM 1757 1444644 - 1444620 - G 76 -9.3 -3.63515 | opp_overlap 1444617 1444614 TTGGATTCGGAACAA GTTGTACCTGT GGT ACAGGCACAGC ATGTTCTTGATTTGA fabF 1446022 - 1444790 - | 3-oxoacyl-(acyl carrier protein) synthase II fabG 1446771 - 1446037 - | 3-ketoacyl-(acyl-carrier-protein) reductase fabD 1447699 - 1446761 - | acyl-carrier-protein S-malonyltransferase fabK 1448695 - 1447724 - | enoyl-[acyl-carrier protein] reductase (NADH) acpP 1449121 - 1448897 - | acyl carrier protein TERM 1758 1449174 - 1449162 - R 73 -7.7 -3.85817 | ATTTGTTTTTATAAA TGTGC TAG GCACA TGAATAACTAGATTC fabH 1450156 - 1449182 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1759 1449989 - 1449936 - G 77 -5 -5.00467 | gap 3, overlap 1449940 1449942 1449945 1449973 GCAACAATAATAAAA TCAA-TAGC--ATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGATCAGCAACCTGA ATAGCTAGGTCACTA TERM 1760 1449980 - 1449940 - G 83 -9.4 -3.87952 | gap 2, overlap 1449936 1449942 1449945 1449973 CAATAATAAAATCAA TAGCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C-A GCAACCTGAATAGCT TERM 1761 1449979 - 1449942 - G 100 -14.5 -3.4959 | gap 1, overlap 1449940 1449936 1449945 1449973 ATAATAAAATCAATA GCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C AGCAACCTGAATAGC TERM 1762 1449977 - 1449945 - G 100 -17.3 -2.86186 | overlap 1449942 1449940 1449936 1449973 ATAAAATCAATAGCA TCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGA TCAGCAACCTGAATA M5005_Spy_1495 1450591 - 1450157 - | MarR family transcriptional regulator phaB 1451459 - 1450668 - | enoyl-CoA hydratase TERM 1763 1451033 - 1451017 - G 84 -7.9 -4.68511 | overlap 1451018 GTCAATAGAAATAAA CCACCGG CAT CCGGTGC TAGTCCAACATTTAC TERM 1764 1451032 - 1451018 - G 85 -11.4 -3.40022 | overlap 1451017 TCAATAGAAATAAAC CACCGG CAT CCGGTG CTAGTCCAACATTTA TERM 1765 1451668 - 1451633 - R 100 -9.9 -5.47218 | opp_overlap 1451633 TTTGACGTAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAAATTATACG TTTGACATCTTTAAA TERM 1766 1451633 - 1451668 + r 82 -9.9 -3.695 | opp_overlap 1451633 TTTGACGTAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAAATTATACG TTTGACATCTTTAAA dnaJ 1452836 - 1451679 - | chaperone protein TERM 1767 1451869 - 1451890 + g 70 -5.9 -4.33907 | gap 1, overlap 1451855 CGGAGTTTTGGTGCT CCTTT-GCCT TTG AGGCGGAAGG TTTTACCTGTTTGTG TERM 1768 1452474 - 1452460 - G 73 -8.6 -3.64866 | opp_overlap 1452454, overlap 1452448 ACACGATATTGCAAA TCGTCA CCT TGACGA GGGGCATTTGGGTTT TERM 1769 1452984 - 1452999 + r 73 -7.6 -3.82605 | CACGCTTTAGCCTGT GTTCGA ATAA TCGAAC TTGTATTCCTTTCTT TERM 1770 1453081 - 1453060 - R 93 -8.8 -4.67353 | opp_overlap 1453053 1453050 1453062 TTATTTAGCCAAAAA CAGAGGTT TGGTAC AACCTCTG AATTCGGATATTAAT dnaK 1454943 - 1453117 - | molecular chaperone DnaK grpE 1455657 - 1455124 - | hypothetical protein TERM 1771 1455608 - 1455618 + g 71 -6.8 -4.03888 | GTCTCTTCAGTTTCA GTGG CTT CCAC TTCTTCTTGTAAATC hrcA 1456733 - 1455699 - | heat-inducible transcription repressor TERM 1772 1456755 - 1456781 + r 78 -7.4 -4.14004 | ACCACTCCCTTTCGT TTAGCACTCTAT TTA GTAGACTGCTAA TTTATAATTCTATTA TERM 1773 1456875 - 1456829 - R 83 -2.4 -5.80364 | opp_overlap 1456839, overlap 1456839 ATGTCAAGAAAAAAA CTCAAAAAAATTAGCACTCTTT TAT AAAGAGCGCTAATTTCAGTCAT AGTTTGTTAAATCGT TERM 1774 1456865 - 1456839 - R 100 -13.2 -5.63857 | opp_overlap 1456839, overlap 1456829 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGCGCTAA TTTCAGTCATAGTTT TERM 1775 1456839 - 1456865 + r 89 -11 -3.70438 | opp_overlap 1456839 1456829 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGCGCTAA TTTCAGTCATAGTTT M5005_Spy_1501 1457437 - 1456868 - | N-acetylmuramoyl-L-alanine amidase TERM 1776 1456916 - 1456926 + g 70 -5.4 -4.45485 | GACCTGAATTAGTCG CCTA GCA TAGG TTTTATCAGTATAAT M5005_Spy_1502 1458177 - 1457434 - | D-alanyl-D-alanine carboxypeptidase M5005_Spy_1503 1458874 - 1458167 - | phosphoglycerate mutase TERM 1777 1459223 - 1459270 + r 93 -14.4 -2.60211 | opp_overlap 1459234, overlap 1459234 AGATAAGACATTTTA TGTTGCAAAAAGGCTGCTTGGA AACT TCCATGCAGCCTTTTTTTAATA CCTTTTTCCAAAAAT TERM 1778 1459259 - 1459234 - R 100 -13.3 -4.58395 | opp_overlap 1459223 1459234 TTTATGTTGCAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT TERM 1779 1459234 - 1459259 + r 100 -13.3 -5.54894 | opp_overlap 1459234, overlap 1459223 TTTATGTTGCAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT M5005_Spy_1504 1459513 - 1459265 - | hypothetical protein M5005_Spy_1505 1459938 - 1459723 - | hypothetical protein TERM 1780 1459888 - 1459864 - G 81 -5.6 -5.05601 | CATGACATACAAAAA GGCAGCCTGT GAAAG ACCGACCGCC TTTTTTTCAGAGACA gatB 1461374 - 1459935 - | aspartyl/glutamyl-tRNA amidotransferase subunit B gatA 1462840 - 1461374 - | aspartyl/glutamyl-tRNA amidotransferase subunit A gatC 1463142 - 1462840 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 1781 1463357 - 1463322 - R 100 -20 -5.24989 | CCATACAGCAAAAAA CTTCCTGACTAAGGTC AGAA AACCTTAGTCAGGAAG TGTGACAAACTAAAC M5005_Spy_1509 1463583 - 1463374 - | pyruvate, phosphate dikinase M5005_Spy_1510 1463671 - 1463555 - | pyruvate, phosphate dikinase M5005_Spy_1511 1464691 - 1464245 - | pyrazinamidase/nicotinamidase TERM 1782 1464800 - 1464828 + r 83 -6.1 -5.19879 | opp_overlap 1464805, overlap 1464802 1464805 CTACCATTAACAGCA AAAAACATCTCTT TTC AAGAGATGTTGTC TTTTTCTATTTAAAA TERM 1783 1464802 - 1464826 + r 85 -8.7 -4.22132 | opp_overlap 1464805, overlap 1464800 1464805 ACCATTAACAGCAAA AAACATCTCTT TTC AAGAGATGTTG TCTTTTTCTATTTAA TERM 1784 1464823 - 1464805 - R 100 -10.4 -5.28683 | opp_overlap 1464802 1464800 1464805 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT TERM 1785 1464805 - 1464823 + r 100 -10.4 -4.17582 | opp_overlap 1464805, overlap 1464802 1464800 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT codY 1465620 - 1464838 - | transcriptional repressor CodY TERM 1786 1465043 - 1465053 + g 73 -6.8 -4.15066 | opp_overlap 1465042 1465052, overlap 1465052 AACTCTCCAAGAATT GCTG CAA CAGC TTTCATTTCTGAATA M5005_Spy_1513 1467052 - 1465838 - | aminotransferase AlaT TERM 1787 1466071 - 1466061 - G 71 -6.8 -3.99693 | opp_overlap 1466061, overlap 1466059 GGAAATAAATAAAGA CCTG CTT CAGG TTTAACTGCCGATAA TERM 1788 1467253 - 1467239 - H 84 -3.6 -5.68023 | opp_overlap 1467239 GTATAATGAAAAAAA GAATAA AAG CTATTC TTGTCAAACTGTTAA M5005_Spy_1514 1467283 - 1467735 + | universal stress protein M5005_Spy_1515 1469135 - 1467858 - | HAD superfamily hydrolase TERM 1789 1468688 - 1468708 + g 70 -3.3 -4.84642 | TTCTTGTAATTTTTA TATGAGGGA ACT TCTCTTGTA TTTTCTTAGTTTCAG asnB 1469318 - 1470283 + | L-asparaginase TERM 1790 1470295 - 1470336 + T 100 -18.4 -2.9587 | opp_overlap 1470302, overlap 1470302 ATAATCTAGCTTCCT TTAGAAATGTCCCACTAA AACATA TTAGTGGGACATTTCTAG TACTTTAAGCTTTAA TERM 1791 1470329 - 1470302 - T 95 -12.9 -3.85817 | opp_overlap 1470302 1470295 AGCTTCCTTTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA TERM 1792 1470302 - 1470329 + T 100 -12.9 -4.04209 | opp_overlap 1470302, overlap 1470295 AGCTTCCTTTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA M5005_Spy_1517 1471336 - 1470632 - | lantibiotic transport permease protein M5005_Spy_1518 1472251 - 1471349 - | transporter TERM 1793 1471827 - 1471811 - G 77 -5.1 -4.88228 | overlap 1471813 ATCCAAGATTAAAAA TTCTGGA AAA TCCAGTA TCGAAAGACCAATAG recG 1474559 - 1472544 - | ATP-dependent DNA helicase TERM 1794 1474731 - 1474697 - g 79 -11.5 -2.60508 | opp_overlap 1474699, overlap 1474696 1474695 GAGGTCTCAAAAATC CCGAGTGGCGTCAAT ACGAG ATTGACGCCACTCTT TTACCACAGCAAAAA TERM 1795 1474699 - 1474729 + G 100 -18.5 -4.07568 | opp_overlap 1474697 1474696 1474695 GGTCTCAAAAATCCC GAGTGGCGTCAAT ACGAG ATTGACGCCACTC TTTTACCACAGCAAA TERM 1796 1474789 - 1474779 - g 79 -6.8 -4.56597 | CTTTGTGTGTAAAAA TCGG AAA CCGA ATGTCAAATCAGCAG M5005_Spy_1520 1474652 - 1474852 + | hypothetical protein TERM 1797 1474853 - 1474875 + T 80 -9.3 -3.60072 | overlap 1474850 TTGTCTACGTTCTGA CTCTTGTAT CTATT ATACAAGAG TTCCTATTTATTTTC M5005_Spy_1521 1476388 - 1474934 - | cobalt transport ATP-binding protein cbiO TERM 1798 1475868 - 1475881 + gT 71 -6.7 -4.04587 | CCTTGCATAATGGCC GTTGC AATA GCAAC TCTTTGTTTTTGCCC M5005_Spy_1522 1477005 - 1476325 - | cobalt transport protein cbiQ M5005_Spy_1523 1477595 - 1477002 - | permease M5005_Spy_1524 1479262 - 1477592 - | ABC transporter ATP-binding protein M5005_Spy_1525 1481018 - 1479255 - | ABC transporter ATP-binding protein fhuC 1481851 - 1481015 - | ferrichrome transport ATP-binding protein M5005_Spy_1527 1482870 - 1481848 - | ferrichrome transport system permease protein TERM 1799 1482095 - 1482075 - G 87 -8.3 -4.49958 | overlap 1482092 AGCCTAGGAAAGAAA CCACTCCAA CGA TCGAAGTGG CTACCGAAGCCAATA M5005_Spy_1528 1483756 - 1482872 - | ferrichrome-binding protein shp 1484615 - 1483740 - | putative heme binding protein TERM 1800 1484238 - 1484249 + g 72 -4.4 -4.70266 | TAGTGTTGTCCCATT GGTA TCAG TACC TTTTTGGGTGATATT M5005_Spy_1530 1488639 - 1484812 - | putative Fe3+-siderophore transport protein TERM 1801 1489025 - 1488999 - R 100 -9.5 -5.89921 | opp_overlap 1489004 ATCACAATAAAAAAA GACAATAGCCC TAATC GTGCTATTGTC TCAAAATCATTTATT isp2 1490639 - 1489128 - | immunogenic secreted protein TERM 1802 1490466 - 1490478 + g 82 -4.1 -5.4593 | AGTTTTATCTGATGT TGTAG GTG CTGCA TTTTTATTATTTTCC alr 1491826 - 1490726 - | alanine racemase acpS 1492179 - 1491823 - | 4'-phosphopantetheinyl transferase TERM 1803 1492262 - 1492226 - R 90 -11.7 -3.79071 | opp_overlap 1492232 1492235, overlap 1492228 GTTAGAAGATTTAAA CAGTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTCTA TATACCTAACTTTGT TERM 1804 1492260 - 1492228 - R 90 -12.1 -3.47542 | opp_overlap 1492232 1492235, overlap 1492226 TAGAAGATTTAAACA GTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTC TATATACCTAACTTT TERM 1805 1492232 - 1492256 + r 100 -15.9 -4.1399 | opp_overlap 1492228 1492226, overlap 1492235 AGATTTAAACAGTGA GAAGCTGAGAA TTA TTCTCAGCTTC TTTCTATATACCTAA TERM 1806 1492235 - 1492253 + r 100 -11.8 -4.18674 | opp_overlap 1492228 1492226, overlap 1492232 TTTAAACAGTGAGAA GCTGAGAA TTA TTCTCAGC TTCTTTCTATATACC secA 1494814 - 1492295 - | preprotein translocase subunit SecA TERM 1807 1494728 - 1494739 + g 86 -4.4 -5.51165 | CGCCATTTGGTCTGC GTAG GATT CTAC TTTTTTTGCAATTTT M5005_Spy_1535 1494996 - 1494892 - | hypothetical protein M5005_Spy_1536 1495495 - 1494980 - | transposase M5005_Spy_1537 1496102 - 1495398 - | transposase pmi 1497217 - 1496264 - | mannose-6-phosphate isomerase scrK 1498268 - 1497312 - | fructokinase TERM 1808 1498328 - 1498376 + r 100 -16.5 -2.52933 | opp_overlap 1498328 1498333, overlap 1498333 1498342 TGTCATCAAAACCTA TAAAAGACTAAAAATCTGGGA CTATTCA TCTCAGATTTTTAGTCTTTTG GTTAATCAATTCCAG TERM 1809 1498376 - 1498328 - R 86 -12.8 -2.77781 | opp_overlap 1498328 1498333 1498342, overlap 1498333 TGTCATCAAAACCTA TAAAAGACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTCTTTTG GTTAATCAATTCCAG TERM 1810 1498371 - 1498333 - R 100 -12.7 -4.54477 | opp_overlap 1498328 1498333 1498342, overlap 1498328 TCAAAACCTATAAAA GACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTC TTTTGGTTAATCAAT TERM 1811 1498333 - 1498371 + r 100 -14.2 -4.45945 | opp_overlap 1498333 1498328, overlap 1498328 1498342 TCAAAACCTATAAAA GACTAAAAATCTGGGA CTATTCA TCTCAGATTTTTAGTC TTTTGGTTAATCAAT endoS 1501447 - 1498460 - | endo-beta-N-acetylglucosaminidase F2 precursor TERM 1812 1499524 - 1499538 + g 73 -7.8 -3.89085 | TTTTCCCATAGGTAT CTGGGT AAT GCCCAG TTGGTTTTTGCTTGT M5005_Spy_1541 1501635 - 1501471 - | hypothetical protein TERM 1813 1501644 - 1501677 + r 100 -14.8 -4.015 | opp_overlap 1501652, overlap 1501652 CTGCCATCCATGGCA GGACAAAAGAGCTG CTTAGT TAGCTCTTTTGTCC TTATTTGATAAGTGC scrA 1503561 - 1501678 - | PTS system, sucrose-specific IIABC component TERM 1814 1503694 - 1503713 + H 78 -2.2 -5.58522 | ATCACTAATATTTTT TATGTCAA GCGT TTAACATA TTTTTATTTTATATG scrB 1503803 - 1505242 + | sucrose-6-phosphate hydrolase scrR 1505247 - 1506212 + | sucrose operon repressor TERM 1815 1506240 - 1506298 + T 100 -17.1 -3.15699 | opp_overlap 1506246 1506252, overlap 1506246 1506252 CAATCACTAATTACT CTAAAAGACAAACAAGCTTACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTCTTTTAA TATTCGTACATAAAT TERM 1816 1506246 - 1506292 + T 100 -16.1 -4.44797 | opp_overlap 1506246 1506252, overlap 1506240 1506252 CTAATTACTCTAAAA GACAAACAAGCTTACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1817 1506292 - 1506246 - T 100 -13.9 -4.17023 | opp_overlap 1506246 1506240 1506252, overlap 1506252 CTAATTACTCTAAAA GACAAACAAGCTTACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1818 1506252 - 1506286 + T 82 -7.9 -4.49352 | opp_overlap 1506246 1506252, overlap 1506246 1506240 ACTCTAAAAGACAAA CAAGCTTACTCTTTC TAGAT GCGAGAGTATGCTTG TTTGTCTTTTAATAT TERM 1819 1506348 - 1506322 - T 85 -6.7 -5.24449 | gap 1, opp_overlap 1506322 CATAAATTGAAAAAA TCGGATACAATC CTAA GATTGC-TCCGA CTTATTATGATTTAT nusB 1506805 - 1506353 - | transcription antitermination protein NusB TERM 1820 1506760 - 1506750 - G 76 -6.8 -4.44046 | TCTATGTTAAATAAA GCCT GAA AGGC ACGTTCACGCAAATC M5005_Spy_1546 1507187 - 1506798 - | Gls24 family general stress protein efp 1507790 - 1507233 - | elongation factor P comEB 1508347 - 1507886 - | comE operon protein 2 M5005_Spy_1549 1509455 - 1508382 - | Xaa-Pro dipeptidase TERM 1821 1509564 - 1509547 - R 82 -7.7 -4.55826 | TTTAAAAGATTAAAA GGAGCTC AAAC GAACTCC TAATCCTATTGTTGT uvrA 1512428 - 1509570 - | excinuclease ABC subunit A TERM 1822 1509962 - 1509982 + g 71 -6.9 -4.11216 | GTCCAACATCCTTAA TCGTTTGAA TTT TTCGAGCGA TTTTAGGAATAGCAG corA 1512601 - 1513545 + | magnesium and cobalt transport protein TERM 1823 1513935 - 1513917 - g 71 -3.8 -4.95896 | opp_overlap 1513919, overlap 1513919 AGAAACTGACAAAAA CACCAATC CTT GGTTGATG TGGCTAGATACCTCT M5005_Spy_1552 1513678 - 1514334 + | hypothetical protein TERM 1824 1514346 - 1514366 + T 80 -6.9 -4.6038 | ATAACAATCATTTCA TCCTTGC TGTCTAC GCAAGGA TTTTCGTTTACTATC TERM 1825 1514435 - 1514466 + T 75 -9 -3.44334 | gap 1, opp_overlap 1514442, overlap 1514442 CTAGTCCTAGTCAAC TAAA-AAACAGTCCG AAA TGGACTGTTTGTTTA TTAGTCTTCGTTTAC TERM 1826 1514442 - 1514458 + T 93 -8.7 -4.71791 | opp_overlap 1514442, overlap 1514435 TAGTCAACTAAAAAA CAGTCCG AAA TGGACTG TTTGTTTATTAGTCT TERM 1827 1514458 - 1514442 - T 90 -8 -5.28481 | opp_overlap 1514442 1514435 TAGTCAACTAAAAAA CAGTCC GAAAT GGACTG TTTGTTTATTAGTCT rpsR 1514706 - 1514467 - | 30S ribosomal protein S18 ssb3 1515362 - 1514871 - | single-strand DNA-binding protein rpsF 1515674 - 1515384 - | 30S ribosomal protein S6 M5005_Spy_1556 1516140 - 1515847 - | hypothetical protein mutY 1516461 - 1517462 + | A/G-specific adenine DNA glycosylase TERM 1828 1517469 - 1517487 + F 82 -5.3 -5.29846 | AATGCTTAATCGCAA GTGAACT ATAAC GGTTCAC TTTTTGTTTACAATT TERM 1829 1517504 - 1517521 + F 72 -4.9 -4.70266 | TTTTGTTTACAATTC CTTTACG CCGC TGTAAAG TTTTTCGGTGATATT M5005_Spy_1558 1517538 - 1518125 + | transcriptional regulator TERM 1830 1518138 - 1518176 + T 100 -17 -3.09933 | opp_overlap 1518144 1518148, overlap 1518144 1518148 TGAAGTTAGTAGGTC ATAAAATAAAGCTCAGCG TGA CGCTGGGCTTTATTTTAG TTAACTCAATTCAGC TERM 1831 1518170 - 1518144 - T 100 -13.8 -4.40804 | opp_overlap 1518144 1518138 1518148, overlap 1518148 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1832 1518144 - 1518170 + T 100 -16 -4.43477 | opp_overlap 1518144 1518148, overlap 1518138 1518148 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1833 1518148 - 1518166 + T 100 -12.4 -4.78077 | opp_overlap 1518144 1518148, overlap 1518144 1518138 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC TERM 1834 1518166 - 1518148 - T 100 -10.2 -4.77775 | opp_overlap 1518148 1518144 1518138, overlap 1518144 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC trx 1518491 - 1518177 - | thioredoxin M5005_Spy_1560 1519075 - 1518572 - | phosphatidylglycerophosphatase B mutS2 1521415 - 1519076 - | DNA mismatch repair protein TERM 1835 1521541 - 1521512 - R 78 -7.3 -4.41348 | gap 1, opp_overlap 1521512 TTTCTCGTAAATAAA GAACCTAAAGGTGA AAC TCA-CTCCAGGTTC TTATATTAGTCACAA M5005_Spy_1562 1522109 - 1521564 - | colicin V production protein M5005_Spy_1563 1522420 - 1522112 - | putative cytoplasmic protein TERM 1836 1522382 - 1522396 + g 77 -8.6 -3.89881 | CAATGTTAATGTTTT TTCACC AAA GGTGAA TTTATAGCGATTAAT TERM 1837 1522962 - 1522952 - g 70 -2.6 -5.06451 | GATGATTCTAAAAAA TTAT CGG ATAA AACCATTCAACAGAT M5005_Spy_1564 1522577 - 1523479 + | ribonuclease HIII TERM 1838 1523522 - 1523508 - g 73 -8.6 -3.76781 | opp_overlap 1523507 AAACAGTTTATTAAA GAATGG GGC CCATTC ACTCTCTTTTTAATT spi 1523490 - 1524083 + | signal peptidase I TERM 1839 1524090 - 1524105 + F 100 -10.4 -4.35874 | opp_overlap 1524090 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG TERM 1840 1524105 - 1524090 - f 100 -10.4 -5.37345 | opp_overlap 1524090 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG recD 1524141 - 1526594 + | exodeoxyribonuclease V alpha chain TERM 1841 1526715 - 1526703 - g 74 -4.8 -4.7254 | ATTTCTTATGAAAAA GTGC GTCAG GCAC TCAAAACGTCTACTA TERM 1842 1527063 - 1527046 - g 70 -8.5 -3.35015 | overlap 1527049 TTAACCAGTTCACAA CAACCAT GTCA ATGGTTG GAACTATCCTTATCC M5005_Spy_1567 1526685 - 1527167 + | hypothetical protein TERM 1843 1527228 - 1527173 - T 84 -8.39999 -4.63932 | opp_overlap 1527185, overlap 1527176 1527185 1527188 TATGCTGTAATAAAA TAATGGACCAAAGAAGCTGATTAGGG AAAT CCCTAATCAGCTTCTTTTTTCTCCAA AATGAGGCGGACGGA TERM 1844 1527225 - 1527176 - T 100 -12.3 -4.43307 | opp_overlap 1527185, overlap 1527173 1527185 1527188 GCTGTAATAAAATAA TGGACCAAAGAAGCTGATTAGGG AAAT CCCTAATCAGCTTCTTTTTTCTC CAAAATGAGGCGGAC TERM 1845 1527216 - 1527185 - T 100 -20.4 -3.82531 | opp_overlap 1527185, overlap 1527176 1527173 1527188 AAATAATGGACCAAA GAAGCTGATTAGGG AAAT CCCTAATCAGCTTC TTTTTTCTCCAAAAT TERM 1846 1527185 - 1527216 + T 100 -20.4 -5.24531 | opp_overlap 1527185 1527176 1527173 1527188 AAATAATGGACCAAA GAAGCTGATTAGGG AAAT CCCTAATCAGCTTC TTTTTTCTCCAAAAT TERM 1847 1527213 - 1527188 - T 100 -16.3 -4.02571 | opp_overlap 1527185, overlap 1527185 1527176 1527173 TAATGGACCAAAGAA GCTGATTAGGG AAAT CCCTAATCAGC TTCTTTTTTCTCCAA dinP 1528354 - 1527260 - | DNA polymerase IV TERM 1848 1528928 - 1528902 - g 71 -6.5 -4.14511 | AACTTCATGCCAAAA GGTGGTATCCG TATGG CGGAAACGACC CTTAAAGAAAACGGC pfl 1528563 - 1530890 + | formate acetyltransferase TERM 1849 1530923 - 1530962 + T 100 -15.3 -5.1925 | opp_overlap 1530923 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC TTTTTTCACTTATAA TERM 1850 1530962 - 1530923 - T 100 -17.5 -5.3236 | opp_overlap 1530923 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC TTTTTTCACTTATAA M5005_Spy_1570 1532018 - 1531068 - | penicillin-binding protein M5005_Spy_1571 1532755 - 1532003 - | c3-degrading proteinase TERM 1851 1533086 - 1533107 + G 80 -2.2 -5.67711 | overlap 1533083 CTTAGACTGATACAA GCTTTGCT AGTTTC GGCAATGC TTTTTATTTTCTTTA TERM 1852 1533391 - 1533403 + G 85 -9.1 -4.18702 | AACTTTACTTGCTAT GGCTG CAG CAGCC TTTATTGGAGCTTAT M5005_Spy_1572 1533053 - 1533949 + | hypothetical protein TERM 1853 1533955 - 1533982 + T 75 -4.9 -4.98616 | opp_overlap 1533955 AAATAGATAAGATAA CGTTTCTGG GAATCACTAA CCAGAGACG TTTTTAATATTTTAC TERM 1854 1534254 - 1534230 - T 79 -4.3 -5.38951 | opp_overlap 1534230 AACTCATATAAAAAA GACAAGTTC CTTAAGC GAGCTTGTC TTGAGTCTAAAAGAA glpF.2 1535133 - 1534285 - | aquaporin TERM 1855 1535301 - 1535261 - R 73 -4.1 -4.97957 | gap 1, opp_overlap 1535261 1535263 1535265 CACACAATAATAAAA GCGGTAAAGAAAAGGACC ATAAAA GG-CCTTATCTTTATCAC TTTATTTCATAGTAT M5005_Spy_1574 1535449 - 1535303 - | universal stress protein norA 1536831 - 1535635 - | quinolone resistance protein TERM 1856 1536012 - 1535985 - G 76 -2.1 -5.42259 | gap 1, opp_overlap 1535992, overlap 1535990 1535991 CCATTGCTAAAAAAA GATAACTTGGGT ACAAG ACCCAT-TTATC GCCTTTAGCATCCAT TERM 1857 1536809 - 1536819 + g 74 -4 -5.13741 | opp_overlap 1536806, overlap 1536806 ATGGCCACAAAATGT TTGT TAA ACAA TTTTTCTTCCATTGA srv 1536937 - 1537656 + | Crp family transcriptional regulator TERM 1858 1538423 - 1538387 - g 87 -5.1 -5.41143 | opp_overlap 1538396, overlap 1538396 1538399 TAGTCGTTAAAAAAA GGAGACAAATCACTGTC GAA GACAGGGATTTTATTCC TCTTGAGACACAGCC TERM 1859 1538396 - 1538414 + G 83 -7.4 -4.78753 | opp_overlap 1538396 1538387 1538399 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1860 1538414 - 1538396 - g 76 -7.4 -4.24562 | opp_overlap 1538396, overlap 1538387 1538399 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1861 1538681 - 1538669 - g 75 -5.5 -4.67353 | CCAGCCACTCAAAAA CCCAC CAA GTGAG AGCTGATTGGGCAAA pepXP 1537678 - 1539960 + | x-prolyl-dipeptidyl aminopeptidase TERM 1862 1539998 - 1539965 - T 81 -7.6 -4.41302 | opp_overlap 1539970, overlap 1539970 CATCAAATTAACAAA GAAAAGTGCTTAGC AATATA ACTAAGCACTTTTT TGTTAATTGGTCTTA TERM 1863 1539993 - 1539970 - T 88 -7.5 -5.13527 | opp_overlap 1539970, overlap 1539965 AATTAACAAAGAAAA GTGCTTAGC AATATA ACTAAGCAC TTTTTTGTTAATTGG TERM 1864 1539970 - 1539993 + T 87 -6.8 -5.5604 | opp_overlap 1539970 1539965 AATTAACAAAGAAAA GTGCTTAG CAATATAA CTAAGCAC TTTTTTGTTAATTGG M5005_Spy_1578 1540261 - 1540040 - | Cro/CI family transcriptional regulator TERM 1865 1540101 - 1540075 - G 76 -2.2 -5.42259 | opp_overlap 1540078, overlap 1540077 1540078 CTATTCCTAAAAAAA TATCATCAACGG AAA CCGCTAATGCTT GTGCAATACCTTTTA M5005_Spy_1579 1540431 - 1540805 + | transcriptional regulator M5005_Spy_1580 1540998 - 1541297 + | hypothetical protein TERM 1866 1541309 - 1541334 + T 100 -12.7 -5.66684 | opp_overlap 1541309 CTAAAAAAACAAAAA CTAGCTTGAGA AGGA TCTCAGGCTAG TTTTTTTATGAGTTA TERM 1867 1541334 - 1541309 - T 100 -10.5 -5.86609 | opp_overlap 1541309 CTAAAAAAACAAAAA CTAGCTTGAGA AGGA TCTCAGGCTAG TTTTTTTATGAGTTA M5005_Spy_1581 1542091 - 1541354 - | MerR family transcriptional regulator dnaQ 1542827 - 1542240 - | DNA polymerase III subunit epsilon TERM 1868 1542858 - 1542844 - R 88 -7.8 -5.00616 | opp_overlap 1542844 TTTTCCTCCAAAAAA GACCCT GAT AGGGCC TTCGTCATTTTTTGT M5005_Spy_1583 1543406 - 1542876 - | putative cytoplasmic protein TERM 1869 1543730 - 1543716 - g 83 -3.5 -5.53288 | CTTAATTGAAAAAAA TCGCC GCTTA GGCAA AAAATTAGCGGGAAC TERM 1870 1544569 - 1544541 - g 76 -4.6 -5.093 | TCCAAAACAAGAAAA GGAATTGCTTGA TAAAC TCAAACACCTCC AGATACCCATTACAG M5005_Spy_1584 1543612 - 1544781 + | NAD(FAD)-utilizing dehydrogenase TERM 1871 1544790 - 1544814 + T 100 -9.4 -4.70266 | opp_overlap 1544790 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT TERM 1872 1544814 - 1544790 - T 88 -7.2 -5.1287 | opp_overlap 1544790 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT TERM 1873 1544822 - 1544836 + T 86 -2.8 -5.83211 | TAGTAGGCTTTTTAA CTCCTA TTA TATGAG TTTTTTGTTTTAGTC deoC 1545547 - 1544876 - | deoxyribose-phosphate aldolase nupC 1546779 - 1545577 - | nucleoside permease udp 1547579 - 1546800 - | uridine phosphorylase M5005_Spy_1588 1547745 - 1547644 - | hypothetical protein crgR 1547819 - 1548562 + | GntR family transcriptional regulator TERM 1874 1548743 - 1548711 - f 85 -12.2 -2.98729 | overlap 1548720 TATAATGATTATATA TCCACTTAACCAGT TAAAT ACCAGTTAAGTGGA TTCAGAGCGCTGATA rpsN 1548798 - 1549067 + | 30S ribosomal protein S14 TERM 1875 1549155 - 1549182 + T 100 -14.3 -5.00616 | opp_overlap 1549158 TACTTATCATCATGA CAACCCGGTAT GCCAAG ATACCGGGTTG TTTTTTCAAAGGGAG TERM 1876 1549179 - 1549158 - T 85 -10.2 -3.45023 | opp_overlap 1549155 TTATCATCATGACAA CCCGGTAT GCCAAG ATACCGGG TTGTTTTTTCAAAGG M5005_Spy_1591 1550266 - 1549238 - | O-sialoglycoprotein endopeptidase M5005_Spy_1592 1550711 - 1550256 - | ribosomal-protein-alanine acetyltransferase M5005_Spy_1593 1551381 - 1550683 - | glycoprotease family protein M5005_Spy_1594 1551666 - 1551896 + | hypothetical protein TERM 1877 1552017 - 1552060 + G 79 -9.8 -3.63341 | gap 1, opp_overlap 1552027, overlap 1552027 CATTATCGTTGATGC CGGTATCAAATTCCCAGAAGA TGA TCTTTTGGGAA-TTGATTACG TTATTCCAGACTATT TERM 1878 1552027 - 1552051 + G 87 -12.3 -3.43049 | opp_overlap 1552027, overlap 1552017 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 1879 1552051 - 1552027 - g 80 -10.1 -3.72893 | opp_overlap 1552027 1552017 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 1880 1553473 - 1553460 - g 79 -6.7 -4.61482 | TGCTTTAAAAAATAA GGATG CTAG CATCC AATCAGTTAACGGTG M5005_Spy_1595 1551898 - 1553580 + | Zn-dependent hydrolase TERM 1881 1553695 - 1553658 - T 73 -7.9 -3.88015 | gap 1, opp_overlap 1553658 1553664, overlap 1553634 1553664 CAGATAATTATCAAA CTAAAA-CCAGTCCTCAT AGA ACATGGACTGGTTTTTAG TTTTCTATAATGGAA TERM 1882 1553664 - 1553688 + T 76 -4.3 -5.15526 | opp_overlap 1553658 1553664, overlap 1553658 ATTATCAAACTAAAA CCAGTCC TCATAGAACAT GGACTGG TTTTTAGTTTTCTAT TERM 1883 1553688 - 1553664 - T 80 -7.1 -4.59376 | opp_overlap 1553664 1553658, overlap 1553658 ATTATCAAACTAAAA CCAGTCCTCAT AGA ACATGGACTGG TTTTTAGTTTTCTAT TERM 1884 1553797 - 1553775 - T 100 -10.6 -4.19258 | ATAGCTCATCCAAAA GACCCACTCA ACT TGAGCAGGTC CTGATAAGTCTAATA glnA 1555153 - 1553807 - | glutamine synthetase TERM 1885 1555007 - 1555028 + g 80 -10.3 -3.63298 | opp_overlap 1555000 1555004, overlap 1555005 ATCAAACATAACCTT GTTAGACAA TACT TTGTCTAAC TGTTCTTTAGTTGCA M5005_Spy_1597 1555562 - 1555191 - | MerR family transcriptional regulator M5005_Spy_1598 1556180 - 1555629 - | hypothetical protein TERM 1886 1555807 - 1555793 - G 82 -7.8 -4.56133 | GTGTAATAATCAAAA GAGCAG CCA CTGCCC CAATAATACCTGATT TERM 1887 1556418 - 1556401 - R 93 -7.7 -5.65513 | opp_overlap 1556400 1556401 GATCAACTAAAAAAA GACATGC ATCA GCATGCC CTTTACTATATATTA pgk 1557639 - 1556443 - | phosphoglycerate kinase lppC 1558686 - 1557832 - | acid phosphatase M5005_Spy_1601 1559806 - 1558916 - | membrane protease family protein TERM 1888 1559832 - 1559852 + r 72 -8.4 -3.34232 | opp_overlap 1559835, overlap 1559835 CCTTGTCATATCTTA GAACTGAA CCGTT TTCAGTTC TTGACTTATTGTTAT TERM 1889 1559926 - 1559941 + r 71 -3.2 -5.03145 | TAACCATTAGCTTTG TGATGG ATTA CCCTCA TTTTTTAGGGGCTTA TERM 1890 1560021 - 1560000 - R 88 -7.3 -5.09685 | opp_overlap 1560000 CAATATAGACAAAAA GAGTCAGAC CTTT GCCTAACTC CTCTTTTTTTATTAT M5005_Spy_1602 1561707 - 1560043 - | kinase related to hydroxyacetone kinase asp 1562072 - 1561707 - | putative alkaline-shock protein M5005_Spy_1604 1562234 - 1562097 - | hypothetical protein M5005_Spy_1605 1563372 - 1562239 - | transposase TERM 1891 1563553 - 1563519 - R 71 -8.9 -3.08696 | gap 1, opp_overlap 1563518 1563528 1563551, overlap 1563518 ATGGATAGAAATAAG CTAATAAAAA-AAGCC CTAA GGCTTATTTCTATTAG ATGCGTTCTACTTTA rpmB 1563738 - 1563550 - | 50S ribosomal protein L28 TERM 1892 1564096 - 1564083 - R 90 -8.1 -5.13473 | opp_overlap 1564083 1564084, overlap 1564084 ATTATATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTGTTTAAT TERM 1893 1564083 - 1564096 + r 73 -8.1 -3.69902 | opp_overlap 1564083 1564084, overlap 1564084 ATTATATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTGTTTAAT fba 1565001 - 1564120 - | fructose-bisphosphate aldolase TERM 1894 1565199 - 1565177 - R 100 -9.2 -5.95166 | opp_overlap 1565177 TTTAACCAAAAAAAA GAGACGAATC AAT GATTCACCTC TTACATTATGCGGAG M5005_Spy_1608 1566273 - 1565347 - | alpha/beta hydrolase TERM 1895 1566243 - 1566231 - G 71 -6.3 -4.30809 | TAAGAGTTATCAAAA GGAAT AGA ATTCC TAAATACTTTGCTAT M5005_Spy_1609 1567895 - 1566441 - | CTP synthetase pyrG 1568044 - 1567892 - | CTP synthase TERM 1896 1568203 - 1568179 - R 76 -2.8 -5.54907 | overlap 1568181 TCTAGAAAACAAAAA TAGCCCCCTA TTAAC TAGAGAGCTT TTGCCTGACCTCATA rpoE 1568876 - 1568301 - | DNA-directed RNA polymerase subunit delta TERM 1897 1569066 - 1569040 - R 93 -8.1 -5.69262 | opp_overlap 1569040 TTAGAAAAAGAAAAA CCAGACTAGAA AGACG TTCTAATCCGG CTTGTACGTTTTGTT tig 1570376 - 1569093 - | trigger factor M5005_Spy_1613 1570697 - 1571542 + | mechanosensitive ion channel TERM 1898 1571605 - 1571558 - T 100 -10.3 -5.11033 | gap 1, opp_overlap 1571558 1571559, overlap 1571559 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 1899 1571558 - 1571605 + T 87 -10.3 -3.71649 | gap 1, opp_overlap 1571558 1571559, overlap 1571559 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 1900 1571559 - 1571604 + T 83 -11.6 -2.82668 | gap 1, opp_overlap 1571558 1571559, overlap 1571558 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG TERM 1901 1571604 - 1571559 - T 100 -13.8 -3.65535 | gap 1, opp_overlap 1571559 1571558, overlap 1571558 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG M5005_Spy_1614 1572167 - 1571607 - | hypothetical protein M5005_Spy_1615 1572651 - 1572181 - | hypothetical protein thiD 1573405 - 1572641 - | phosphomethylpyrimidine kinase TERM 1902 1573120 - 1573108 - G 70 -9.1 -3.11922 | opp_overlap 1573110, overlap 1573105 1573106 CAGGATCTAAAACCA CTGGG ATT CCCAG ATGCCCCTTTATAAA truA 1574144 - 1573395 - | tRNA pseudouridine synthase A comX.2 1574880 - 1574329 - | competence-specific sigma factor TERM 1903 1574870 - 1574893 + g 100 -14 -5.68023 | opp_overlap 1574870 AGAACCACAAAAAAA CAACAGGACA TTAA TGTCCTGTTG TTTTTTTCATTATGC TERM 1904 1574893 - 1574870 - G 100 -14 -5.73339 | opp_overlap 1574870 AGAACCACAAAAAAA CAACAGGACA TTAA TGTCCTGTTG TTTTTTTCATTATGC TERM 1905 1575050 - 1575033 - H 89 -6.3 -5.61824 | opp_overlap 1575033, overlap 1575024 TAAAATGCAAAAAAA GATAGGA CGCT TCCTACC TCTCTCTACTCCGCC TERM 1906 1577262 - 1577295 + H 71 -8.9 -3.03412 | overlap 1577256 1577261 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 1907 1577954 - 1577973 + H 91 -12.2 -3.62096 | opp_overlap 1577953 1577952 CGCAGTCCTACAACC CCGAAGTG TAAA CACTTCGG TTTGCCCTCCTGCCG TERM 1908 1580237 - 1580251 + H 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC M5005_Spy_1619 1580302 - 1580436 + | hypothetical protein M5005_Spy_1620 1581740 - 1580598 - | glycerate kinase TERM 1909 1580740 - 1580720 - G 70 -2.5 -5.08824 | overlap 1580696 GTTGTATTGAAAAAA CAGCCAAAA AGT CTTCTGCTG CTAGTCCTGTCTCAA TERM 1910 1582714 - 1582688 - g 76 -4.4 -5.0809 | opp_overlap 1582691, overlap 1582682 1582691 AACAAACCACAAAAA GATCTCTTTGCC TTT GCCAAAGAAGTC CTATCTATCCCTCGT TERM 1911 1584138 - 1584162 + G 74 -9.3 -3.61398 | GCCTCTACTCTAATG GGGGTGAAAAC GAC GTTTTGGCCCC TTCTTGGGAAGAAGA hsdR 1582022 - 1585000 + | type I restriction-modification system restriction subunit TERM 1912 1585374 - 1585347 - g 70 -9.4 -2.60988 | opp_overlap 1585345, overlap 1585344 AAGGTAATGAATTTA TCTTTCAAATAT TAAA ATACTTGAAAGA AATTGGTTATTGGAA hsdS 1585013 - 1586212 + | type I restriction-modification system specificity subunit hsdM 1586225 - 1587805 + | type I restriction-modification system methylation subunit TERM 1913 1587813 - 1587851 + T 77 -9 -3.6715 | opp_overlap 1587818, overlap 1587818 1587820 GAAACTAAAAGACAA AAAAACACCACAGTAG ATGATTA CTACTGTGGCGTTTTA TTTAAAATTGAGTAG TERM 1914 1587818 - 1587846 + T 95 -8.9 -4.90525 | opp_overlap 1587818, overlap 1587813 1587820 TAAAAGACAAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 1915 1587846 - 1587818 - T 100 -11.1 -5.9362 | opp_overlap 1587818 1587813 1587820 TAAAAGACAAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 1916 1587820 - 1587844 + T 75 -10.1 -2.70854 | opp_overlap 1587818, overlap 1587818 1587813 AAAGACAAAAAAACA CCACAGTAG ATGATTA CTACTGTGG CGTTTTATTTAAAAT M5005_Spy_1624 1588206 - 1588015 - | hypothetical protein TERM 1917 1588098 - 1588123 + g 70 -8.5 -3.34233 | TAAAGTAGTTCCAAT CGTTGATATAT AAGC ATATATTAACG TTCTGGGAGTTGTGA TERM 1918 1588319 - 1588341 + r 85 -9.2 -4.04174 | opp_overlap 1588319 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA TERM 1919 1588341 - 1588319 - R 87 -11.4 -3.17714 | opp_overlap 1588319 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA salR 1588963 - 1588358 - | transcriptional regulatory protein M5005_Spy_1626 1590506 - 1588944 - | sensory transduction protein kinase salY 1592453 - 1590546 - | ABC transporter permease protein M5005_Spy_1628 1593192 - 1592455 - | ABC transporter ATP-binding protein salX 1593650 - 1593189 - | lantibiotic transport ATP-binding protein salB 1595349 - 1593724 - | serine (threonine) dehydratase TERM 1920 1595399 - 1595373 - R 100 -12.4 -4.68994 | opp_overlap 1595373 1595372 ACCACTACTTAAAAA TCCTGCCTAGAC TGA GTCTAAACAGGA AATTTTTAGTCTGCT salA 1595578 - 1595432 - | lantibiotic salivaricin A lacG 1597523 - 1596090 - | 6-phospho-beta-galactosidase TERM 1921 1597564 - 1597527 - R 100 -11.7 -4.59511 | gap 1, opp_overlap 1597531, overlap 1597531 AATATCTTTCAAAAA TAAAGTTCCCAAA-ACAA TTT TTGTGTTTGAGAACTTTA CGACATTTAAACTGT TERM 1922 1597560 - 1597531 - R 90 -8.1 -4.85782 | gap 1, opp_overlap 1597531, overlap 1597527 TCTTTCAAAAATAAA GTTCCCAAA-ACAA TTT TTGTGTTTGAGAAC TTTACGACATTTAAA lacE 1599281 - 1597584 - | PTS system, lactose-specific IIBC component lacF 1599598 - 1599281 - | PTS system, lactose-specific IIA component lacD.2 1600605 - 1599622 - | tagatose 1,6-diphosphate aldolase lacC.2 1601538 - 1600609 - | tagatose-6-phosphate kinase lacB.2 1602101 - 1601586 - | galactose-6-phosphate isomerase subunit LacB TERM 1923 1601656 - 1601680 + g 86 -7.1 -5.10497 | GGGTTGTTTTGATCT TGGCTAGCATG TTG CAAGCTATCCA TTTTTTCAATCCATT lacA.2 1602564 - 1602136 - | galactose-6-phosphate isomerase subunit LacA TERM 1924 1602732 - 1602748 + H 90 -3.8 -5.85011 | opp_overlap 1602707 1602732, overlap 1602709 1602707 TATTTTTATAAAAAA TAAACA AAATA TGTTTA TTTTTTTCATTTTTA TERM 1925 1602748 - 1602732 - H 76 -3.8 -5.252 | opp_overlap 1602709 1602707 1602732, overlap 1602707 TATTTTTATAAAAAA TAAACA AAATA TGTTTA TTTTTTTCATTTTTA lacR.2 1603011 - 1603784 + | lactose phosphotransferase system repressor TERM 1926 1604072 - 1604115 + F 84 -11.3 -3.06815 | gap 1, opp_overlap 1604070 1604068 1604072 TTAGCCATCAACATA CCTCTTAAGTAGATTTTGGT TCGTT ACCATG-TCTACTTAAGAGG TGTCTTCAAAGCGCT TERM 1927 1604115 - 1604072 - f 74 -9.1 -3.13867 | gap 1, opp_overlap 1604072, overlap 1604070 1604068 TTAGCCATCAACATA CCTCTTAAGTAGATTTTGGT TCGTT ACCATG-TCTACTTAAGAGG TGTCTTCAAAGCGCT M5005_Spy_1640 1604445 - 1604732 + | DNA-damage-inducible protein J M5005_Spy_1641 1604722 - 1605057 + | putative cytoplasmic protein TERM 1928 1605089 - 1605068 - f 85 -8.7 -4.21314 | opp_overlap 1605068 AATAACACGTTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA TERM 1929 1605068 - 1605089 + F 100 -10.9 -5.18357 | opp_overlap 1605068 AATAACACGTTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA M5005_Spy_1642 1605209 - 1605391 + | DNA integration/recombination/invertion protein M5005_Spy_1644 1605565 - 1605380 - | hypothetical protein M5005_Spy_1643 1605479 - 1605679 + | DNA integration/recombination/invertion protein TERM 1930 1605849 - 1605829 - fH 80 -4.7 -5.2853 | overlap 1605833 CAGCCAAAAAGAAAA GACACAACT AGC AGTTGCACC TCTTTCAATTAAGTC M5005_Spy_1645 1606013 - 1606162 + | DNA integration/recombination/invertion protein TERM 1931 1606229 - 1606255 + T 72 -8 -3.47941 | opp_overlap 1606229 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG TERM 1932 1606255 - 1606229 - T 100 -12.4 -5.77632 | opp_overlap 1606229 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG rpsI 1606674 - 1606282 - | 30S ribosomal protein S9 TERM 1933 1606558 - 1606575 + g 82 -4.2 -5.45652 | TAAGTCAGCATGTGG GATGTA TTCTTC TACATC TTTTTTGTTAACAGT rplM 1607141 - 1606695 - | 50S ribosomal protein L13 TERM 1934 1607339 - 1607353 + r 75 -10 -2.73875 | opp_overlap 1607338 1607337, overlap 1607336 CGATTTAGGAGAATG GCAGAG CTG CTCTGC TGGTGTTAACGAGAA M5005_Spy_1648 1607565 - 1607359 - | Cro/CI family transcriptional regulator M5005_Spy_1649 1608068 - 1607562 - | hypothetical protein TERM 1935 1608170 - 1608193 + r 83 -10.4 -3.31322 | opp_overlap 1608170, overlap 1608181 TTAAGCAGCAAAAAA GGATTGAGGA TTTC TCTTCAATCC TTATAAGGGATTAAC TERM 1936 1608193 - 1608170 - R 90 -8.2 -5.2189 | opp_overlap 1608170 1608181 TTAAGCAGCAAAAAA GGATTGAGGA TTTC TCTTCAATCC TTATAAGGGATTAAC M5005_Spy_1650 1609064 - 1608204 - | degV family protein TERM 1937 1609148 - 1609134 - R 83 -4.9 -5.52986 | ATTTTATCAAAAAAA CCCGC ACTTG GCGAG TCGTAATTCTCATTA M5005_Spy_1651 1609679 - 1609161 - | putative cytoplasmic protein TERM 1938 1609623 - 1609642 + g 79 -10.8 -3.22951 | opp_overlap 1609611, overlap 1609622 AAACAACTGACGGGT TGATTGCC AAAA GGCAATCA TATTATACCCATCTA M5005_Spy_1652 1610429 - 1609683 - | 23S rRNA methyltransferase M5005_Spy_1653 1611273 - 1610476 - | hypothetical protein TERM 1939 1611471 - 1611448 - R 89 -9 -4.29738 | gap 1, opp_overlap 1611451 TCAGACCTATGAAAA TAAGAGTCTCC TAG GG-GACTCTTA TGAGGATATCAATTG M5005_Spy_1654 1611882 - 1611469 - | hypothetical protein cysS 1613218 - 1611875 - | cysteinyl-tRNA synthetase M5005_Spy_1656 1613476 - 1613246 - | hypothetical protein TERM 1940 1613518 - 1613500 - R 100 -11.8 -4.90266 | TTTATTAACGAAAAA CCTTCACA ACC TGTGAAGG CTTCAGAAAGTAGAC M5005_Spy_1657 1613761 - 1613489 - | putative cytoplasmic protein cysE 1614536 - 1613955 - | serine acetyltransferase M5005_Spy_1659 1615297 - 1614545 - | hypothetical protein M5005_Spy_1660 1617422 - 1615290 - | polynucleotide phosphorylase/polyadenylase TERM 1941 1617687 - 1617670 - R 93 -4.1 -6.0458 | opp_overlap 1617670 ACAAAGCAAAAAAAA GCAGG TTGGTATG CCTGC TTTCGTCTCCTAATA M5005_Spy_1661 1618431 - 1617703 - | putative translaldolase ulaA 1619822 - 1618587 - | ascorbate-specific PTS system enzyme IIC TERM 1942 1618719 - 1618703 - G 70 -8.7 -3.2827 | TTAGCGAAGCACCAA TCATCGC ACC GCGACGA CCACCTGTTGAATTT M5005_Spy_1663 1620133 - 1619849 - | PTS system, IIB component M5005_Spy_1664 1622186 - 1620126 - | PTS system, mannitol (cryptic)-specific IIA component TERM 1943 1622344 - 1622357 + r 84 -6.7 -5.15167 | AAAATAGGCAAATCT GGGAA TTGA TTCCC TTTTTCTTCATGATA TERM 1944 1622410 - 1622373 - R 100 -15.9 -2.78384 | opp_overlap 1622373 1622376, overlap 1622376 1622381 TTTTTCTTCATGATA CAACAAAAGATACCTCA TCAC TGAGATACCTTTTGTTG TTAAATAAAATCATC TERM 1945 1622373 - 1622410 + r 84 -11.5 -3.07113 | opp_overlap 1622373 1622376 1622381, overlap 1622376 TTTTTCTTCATGATA CAACAAAAGATACCTCA TCAC TGAGATACCTTTTGTTG TTAAATAAAATCATC TERM 1946 1622407 - 1622376 - R 91 -11.8 -3.54475 | opp_overlap 1622373 1622376, overlap 1622373 1622381 TTCTTCATGATACAA CAAAAGATACCTCA TCAC TGAGATACCTTTTG TTGTTAAATAAAATC TERM 1947 1622376 - 1622407 + r 71 -7.4 -3.68073 | opp_overlap 1622376 1622373 1622381, overlap 1622373 TTCTTCATGATACAA CAAAAGATACCTCA TCAC TGAGATACCTTTTG TTGTTAAATAAAATC TERM 1948 1622402 - 1622381 - R 81 -5.9 -4.85918 | opp_overlap 1622376 1622373, overlap 1622376 1622373 CATGATACAACAAAA GATACCTCA TCAC TGAGATACC TTTTGTTGTTAAATA M5005_Spy_1665 1622554 - 1622411 - | hypothetical protein TERM 1949 1622501 - 1622522 + g 75 -5.7 -4.66833 | opp_overlap 1622501, overlap 1622503 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA TERM 1950 1622522 - 1622501 - G 91 -7.9 -5.18355 | opp_overlap 1622501 1622503 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA rpsO 1622807 - 1622538 - | 30S ribosomal protein S15 TERM 1951 1622644 - 1622661 + g 70 -5.5 -4.38219 | ATTTTTTTCATCAAT CCACGGT AAGT AGCGTGG TCTTTTTTGTGTTGT M5005_Spy_1667 1623120 - 1622965 - | hypothetical protein TERM 1952 1622992 - 1623005 + g 72 -4.5 -4.66163 | opp_overlap 1622985 1622992 ACTAGCAAGGCCAAA TAGCC AAGA GGCTG TTTTTAAATCAGAAT M5005_Spy_1668 1623246 - 1623515 + | putative transcriptional regulator TERM 1953 1624210 - 1624191 - g 74 -5 -4.67904 | GATCAATGCTAAAAA CCCCTTTG AAAC CAAAGAAG AGCTCTTGATTTTAG def 1623616 - 1624230 + | peptide deformylase TERM 1954 1624231 - 1624258 + T 87 -11.5 -3.2794 | opp_overlap 1624231 1624239 TTGATTTTAGACTAA CAAAAAAAGGC CCTTTA GCCTTTTTTTG TTAGTCTAAATAGCC TERM 1955 1624258 - 1624231 - T 89 -12.2 -3.27022 | opp_overlap 1624231, overlap 1624239 TTGATTTTAGACTAA CAAAAAAAGGCC CTTT AGCCTTTTTTTG TTAGTCTAAATAGCC TERM 1956 1624250 - 1624239 - T 90 -3.6 -5.85737 | opp_overlap 1624231, overlap 1624231 AGACTAACAAAAAAA GGCC CTTT AGCC TTTTTTTGTTAGTCT M5005_Spy_1670 1624806 - 1624264 - | oxidoreductase M5005_Spy_1671 1625365 - 1624937 - | MarR family transcriptional regulator TERM 1957 1625205 - 1625184 - G 89 -10.3 -4.1673 | overlap 1625187 GAAGTCGCTAACAAA GAATCAATC AAGT GATTGATTC GCATACAGCCTTTAG TERM 1958 1625202 - 1625187 - G 71 -6.2 -4.20367 | overlap 1625184 GTCGCTAACAAAGAA TCAATC AAGT GATTGA TTCGCATACAGCCTT polC 1629872 - 1625475 - | DNA polymerase III PolC TERM 1959 1626044 - 1626066 + g 74 -6.3 -4.4009 | opp_overlap 1626047 TTTTTCCACACGATT CAATGTACC AGTCG GGCACATTG TTTTCTCGCATGGCA TERM 1960 1628390 - 1628370 - G 71 -6.9 -4.08945 | ACTATCTTTGCAAAA GTCCTGAAA AGC TTTTAGGAC AGTAACCAATGGCTT TERM 1961 1630114 - 1630090 - R 72 -5 -4.80882 | gap 1 AGTTCACAGCAAAAA GAGGCCACTCT AAAC AG-GCAGCCTC TTCATTTCTTTTTTA proS 1631983 - 1630127 - | prolyl-tRNA synthetase TERM 1962 1632098 - 1632131 + r 100 -12.6 -4.77986 | opp_overlap 1632098 TTTCATTTTGAGTAA GACCTCAACCCT TGCAAATCTT AGGGTTGAGGTC TTTTTCGATCTTTAA TERM 1963 1632131 - 1632098 - R 91 -12.6 -3.15544 | opp_overlap 1632098 TTTCATTTTGAGTAA GACCTCAACCCT TGCAAATCTT AGGGTTGAGGTC TTTTTCGATCTTTAA M5005_Spy_1674 1633440 - 1632181 - | pheromone-processing membrane metalloprotease TERM 1964 1633393 - 1633376 - G 70 -5.6 -4.48449 | TTAGCAAAATAGAAA TGTCCA AATTCA TGGACA ATCACTAAAATACCA cdsA 1634307 - 1633513 - | phosphatidate cytidylyltransferase TERM 1965 1634176 - 1634156 - G 77 -7.7 -4.16146 | opp_overlap 1634155 1634156 AAAACACCTTCAAAA GAAAAGACT TCT AATCTTTTC ATTTTCAGTAATTCT uppS 1635069 - 1634320 - | undecaprenyl pyrophosphate synthetase TERM 1966 1635015 - 1635036 + g 100 -4.4 -5.9003 | opp_overlap 1635014, overlap 1635017 1635031 TGATAATTCCAATAT GCTTTGGG ATACTC CCCAAAAC TTTTTTTGTTGATTT TERM 1967 1635118 - 1635133 + r 79 -4.6 -5.31456 | TATTTTATCATATTT CACGCC TTTT GGCTTG TTTTTTATCAATTAG TERM 1968 1635277 - 1635256 - R 89 -3.1 -5.83211 | gap 1, opp_overlap 1635256, overlap 1635249 GATCAAAACAAAAAA GTTTGGCATA TTT CAT-CCAAAC TTTCCCCGCCTTAAT TERM 1969 1635304 - 1635322 + r 71 -8.8 -2.99545 | overlap 1635301 TAATGGCTTTCAATG GCACTGTC AGT GTCAGTGC TATCTACTGTCTCAA yajC 1635653 - 1635288 - | preprotein translocase subunit YajC TERM 1970 1635564 - 1635575 + g 72 -3.6 -5.08831 | GTTTAACTGATTTTG GCGT TCTT GCGC TTGTTTTTTTTGTTG M5005_Spy_1678 1636116 - 1635769 - | thioredoxin TERM 1971 1635864 - 1635852 - G 72 -9.1 -3.35813 | GCTGATCGTAACTAA CCAGC AAA GCTGG AACTGTCACTAATTG M5005_Spy_1679 1638939 - 1636258 - | pullulanase TERM 1972 1638128 - 1638139 + gr 77 -5.8 -4.70626 | opp_overlap 1638128 1638126 GCTTCATAGATAATA GCGT CTTC ACGC TTTTTAAAGTTGTTA TERM 1973 1638207 - 1638218 + gr 72 -5.8 -4.371 | overlap 1638206 TTGGATCAATAAAGG CAGC TTTT GCTG TTTTGATGTCATCAG pulA 1639783 - 1638902 - | pullulanase TERM 1974 1639925 - 1639895 - R 100 -11.3 -4.32649 | gap 1, opp_overlap 1639895 1639897 1639903, overlap 1639890 1639904 ATCTCAAAAATTAAA CAGCCAAAACGAGT TTCC ACTCGCTT-GGCTG TTGGGTAAACTCAAA TERM 1975 1639895 - 1639925 + r 74 -9.1 -3.06796 | gap 1, opp_overlap 1639895 1639890 1639904, overlap 1639897 1639903 ATCTCAAAAATTAAA CAGCCAAAACGAGT TTCC ACTCGCTT-GGCTG TTGGGTAAACTCAAA TERM 1976 1639917 - 1639904 - R 74 -6.7 -4.32903 | opp_overlap 1639903 1639897 1639895, overlap 1639895 1639890 ATTAAACAGCCAAAA CGAGT TTCC ACTCG CTTGGCTGTTGGGTA dexB 1641567 - 1639954 - | glucan 1,6-alpha-glucosidase TERM 1977 1641681 - 1641649 - R 90 -11.5 -3.54488 | opp_overlap 1641658, overlap 1641652 1641658 TTTGCGCAAATAACA TGATAAAAAGGCTGG AAC CCAACCTTTTTATGA ATATCGCTTATACCT TERM 1978 1641678 - 1641652 - R 87 -13.2 -2.90309 | opp_overlap 1641658, overlap 1641649 1641658 GCGCAAATAACATGA TAAAAAGGCTGG AAC CCAACCTTTTTA TGAATATCGCTTATA TERM 1979 1641658 - 1641672 + r 77 -5.6 -4.89852 | opp_overlap 1641658 1641652 1641649 ATAACATGATAAAAA GGCTGG AAC CCAACC TTTTTATGAATATCG TERM 1980 1641672 - 1641658 - R 88 -7.8 -4.9934 | opp_overlap 1641658, overlap 1641652 1641649 ATAACATGATAAAAA GGCTGG AAC CCAACC TTTTTATGAATATCG msmK 1642829 - 1641696 - | multiple sugar transport ATP-binding protein TERM 1981 1643126 - 1643109 - R 76 -4.1 -5.1675 | CCAGGCAGCAAAAAA GAAAGCC CTGT GCCTTTC CTAATATTTCAACAA lrp 1643975 - 1643127 - | leucine rich protein TERM 1982 1643605 - 1643620 + g 76 -9 -3.76125 | ATTGAGATTGCTTGT CGGCAT AAAA ATGCCG TTTGGGTTGCACTGA TERM 1983 1645328 - 1645309 - g 72 -8.6 -3.48024 | opp_overlap 1645307, overlap 1645307 GTTCACCATCAAATA CGTTGATG TCAA CACCAACG AATTGCTAAAAAGCG ska 1644335 - 1645657 + | streptokinase TERM 1984 1645727 - 1645698 - T 95 -8.7 -5.66684 | gap 1, opp_overlap 1645698 TAACTGACAAAAAAA GCAAGCAACACGCT ATC AACA-GTTGCTTGC TTTTTTCTAACCTCT TERM 1985 1645698 - 1645727 + T 80 -5.1 -5.26918 | opp_overlap 1645698 TAACTGACAAAAAAA GCAAGCAAC ACGCTATCAACA GTTGCTTGC TTTTTTCTAACCTCT M5005_Spy_1685 1646198 - 1645755 - | D-tyrosyl-tRNA deacylase relA 1648432 - 1646213 - | GTP pyrophosphokinase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase TERM 1986 1648045 - 1648064 + g 73 -7.2 -4.09739 | gap 1, opp_overlap 1648044 TATCTTTGGACATAG CCATCAGCA TTT TGC-GATGG TTTTCGGCGAGTTGC TERM 1987 1648644 - 1648619 - R 100 -12.7 -4.72272 | opp_overlap 1648619 1648614 GCTCCCGACCAAAAA TAGAGAGAACC AAGG GGCTCTCTCTA TTATGTTTGCTTATC TERM 1988 1648619 - 1648644 + r 93 -10.5 -3.91905 | opp_overlap 1648619, overlap 1648614 GCTCCCGACCAAAAA TAGAGAGAACC AAGG GGCTCTCTCTA TTATGTTTGCTTATC sclA 1648827 - 1648684 - | collagen-like surface protein A M5005_Spy_1688 1649246 - 1649473 + | immunoglobulin receptor precursor M5005_Spy_1689 1649731 - 1649525 - | hypothetical protein TERM 1989 1650365 - 1650395 + G 89 -11.8 -3.67597 | overlap 1650366 GGAGAGTTTATTGCT GCCCATGGCAACGC CCA GCGTTGTCTTGGGA TTATTGGCTCAGGCA TERM 1990 1650366 - 1650394 + G 95 -15.3 -2.80344 | overlap 1650365 GAGAGTTTATTGCTG CCCATGGCAACGC CCA GCGTTGTCTTGGG ATTATTGGCTCAGGC TERM 1991 1650455 - 1650469 + G 73 -8.6 -3.62275 | opp_overlap 1650454 1650451 1650449 ACAGCCAAACAGTAT GCCAAA CGC TTTGGC TTTCCACTGCTAGGT M5005_Spy_1690 1650113 - 1650595 + | hypothetical protein TERM 1992 1650861 - 1650906 + T 100 -24.4 -3.29273 | opp_overlap 1650865, overlap 1650865 GGTTACTGACATGAC TAAAGAGGTCTAACCAGCTC TACCTT GAGCTGGTTAGACCTCTTTG TGTTCTCCTAATCCC TERM 1993 1650865 - 1650902 + T 100 -23 -4.29304 | opp_overlap 1650865, overlap 1650861 ACTGACATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTGGTTAGACCTC TTTGTGTTCTCCTAA TERM 1994 1650902 - 1650865 - T 100 -23 -3.82218 | opp_overlap 1650865 1650861 ACTGACATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTGGTTAGACCTC TTTGTGTTCTCCTAA M5005_Spy_1691 1651807 - 1650989 - | exodeoxyribonuclease III M5005_Spy_1692 1653785 - 1651890 - | PTS system, glucose-specific IIABC component M5005_Spy_1693 1654075 - 1653782 - | PTS system, glucose-specific IIABC component TERM 1995 1654386 - 1654361 - R 90 -3.9 -5.87996 | GAAGCAATAAAAAAA GGCCGTTGACA CAAT CGTGAACTGCC TGTCCGTTTCTTTAG TERM 1996 1654414 - 1654435 + r 72 -5.9 -4.2828 | opp_overlap 1654417, overlap 1654417 TAGCCTCTTCTTTCT AAAGTAAGC AACA GCTTACTTA TTTTGATGCCTGCAA TERM 1997 1654432 - 1654417 - R 71 -7.6 -3.53012 | opp_overlap 1654414 1654417 CCTCTTCTTTCTAAA GTAAGC AACA GCTTAC TTATTTTGATGCCTG TERM 1998 1654417 - 1654432 + r 78 -7.6 -4.26327 | opp_overlap 1654417, overlap 1654414 CCTCTTCTTTCTAAA GTAAGC AACA GCTTAC TTATTTTGATGCCTG M5005_Spy_1694 1655182 - 1654433 - | putative cytoplasmic protein TERM 1999 1655132 - 1655144 + g 100 -6.3 -5.75599 | GATGGTATCTTTATC GGTAA TCG TTACC TTTTTTTCTGCTTTG prmA 1656135 - 1655182 - | ribosomal protein L11 methyltransferase TERM 2000 1655286 - 1655272 - G 70 -2.8 -5.06816 | overlap 1655274 AGTTTCTAAGAAAAA GCCT GCGCTAA AGGC AGCTTCCAGAACCAT M5005_Spy_1696 1656676 - 1656206 - | hypothetical protein TERM 2001 1657093 - 1657114 + G 73 -7.3 -4.13767 | opp_overlap 1657092 1657095 CCCATAATGACAGAC TAGGCAACG AGTA CCTTGCCTA TTTTACAGTGCACAA M5005_Spy_1697 1656876 - 1658633 + | para-aminobenzoate synthetase component I/4-amino-4-deoxychorismate lyase TERM 2002 1658889 - 1658879 - g 79 -5.4 -4.93877 | TTTTACCAAACAAAA CCTA TCT TAGG AGTGTGTCTGGGACA trpG 1658666 - 1659232 + | anthranilate synthase component II M5005_Spy_1699 1659265 - 1660533 + | recombination factor protein RarA TERM 2003 1660924 - 1660911 - f 82 -5.3 -5.24989 | opp_overlap 1660911 CTATACATGAAAAAA CCTTT GTTT AAAGG CTTTTTTTGCTTGTC M5005_Spy_1700 1661030 - 1661470 + | acetyltransferase flaR 1661525 - 1662031 + | topology modulation protein TERM 2004 1662068 - 1662087 + F 72 -5.8 -4.42464 | gap 1, opp_overlap 1662051 1662085, overlap 1662085 ACCACGGGTAATCCG GGCTATTCA GAC TGAA-AGCC TTTGTTTAAAGGCTT TERM 2005 1662085 - 1662100 + F 93 -7.6 -5.4148 | opp_overlap 1662085, overlap 1662068 CTATTCAGACTGAAA GCCTTT GTTT AAAGGC TTTTTTGCTTGTTTC TERM 2006 1662100 - 1662085 - f 73 -7.6 -3.71873 | opp_overlap 1662068 1662085 CTATTCAGACTGAAA GCCTTT GTTT AAAGGC TTTTTTGCTTGTTTC smeZ 1662280 - 1662981 + | mitogenic exotoxin Z M5005_Spy_1703 1663531 - 1663265 - | putative cytoplasmic protein dppA 1663710 - 1665338 + | dipeptide-binding protein TERM 2007 1666246 - 1666258 + G 82 -7.7 -4.52047 | overlap 1666242 TTTGGAGGATCTGTT CTTGC TGA GCAAG TTTTCTCATATCCTG dppB 1665451 - 1666428 + | dipeptide transport system permease protein TERM 2008 1666559 - 1666603 + G 80 -10.9 -3.3353 | opp_overlap 1666571, overlap 1666556 1666571 TTTACGCAACCTCGC TCCTTCCTTAAACCATCTTTT TGG GACAGATGGTTTAGGTAGGGA TATGTTTGTCAGAAC dppC 1666425 - 1667246 + | dipeptide transport system permease protein dppD 1667258 - 1668061 + | dipeptide transport ATP-binding protein dppE 1668045 - 1668671 + | dipeptide transport ATP-binding protein TERM 2009 1668751 - 1668720 - T 83 -11.2 -2.77512 | gap 1, opp_overlap 1668721 1668729, overlap 1668729 AACAAAATCACACCA TTAAAAAAACCAGCT TAC AGCTGG-TTTTTTAA TTATTTTAATTTTTC TERM 2010 1668721 - 1668751 + T 100 -12.8 -4.47007 | opp_overlap 1668720 1668729, overlap 1668729 ACAAAATCACACCAT TAAAAAAACCAGCT TAC AGCTGGTTTTTTAA TTATTTTAATTTTTC TERM 2011 1668729 - 1668743 + T 100 -10 -5.43514 | opp_overlap 1668720 1668729, overlap 1668721 ACACCATTAAAAAAA CCAGCT TAC AGCTGG TTTTTTAATTATTTT TERM 2012 1668743 - 1668729 - T 100 -10 -5.56568 | opp_overlap 1668729 1668721, overlap 1668720 ACACCATTAAAAAAA CCAGCT TAC AGCTGG TTTTTTAATTATTTT M5005_Spy_1709 1668952 - 1668752 - | hypothetical protein TERM 2013 1668921 - 1668931 + g 71 -4 -4.86293 | CCACCAGATGCTTGC TCAA TTT TTGA TTTTAATTTTTCTTC M5005_Spy_1710 1671598 - 1669121 - | streptococcal histidine triad protein TERM 2014 1670101 - 1670125 + g 75 -2.9 -5.33026 | overlap 1670102 TTGTTACTTTGCGAC TCACTTTTTTA GTG TCAAAGAGTGG TTTTTCTTTGCCTTG TERM 2015 1670841 - 1670857 + g 74 -6.5 -4.44608 | opp_overlap 1670840 GGGCGGTAATCAGAC GGTCTAG CAC CTCGACC TTGTTTTTGACTCCA TERM 2016 1671125 - 1671135 + g 73 -5.4 -4.62669 | overlap 1671130 AGTTCCTTTGGCTAC TTGC TCA GCAA TTTGTTGTTTGGTTC lmb 1672531 - 1671611 - | laminin binding protein TERM 2017 1671674 - 1671698 + g 79 -11.5 -2.65274 | overlap 1671673 TAGATATGTCTTGTT TCCGCTTGGAG CAG CTTCAAGTGGA CTTAATGTCTTTACT TERM 2018 1672164 - 1672189 + g 89 -10.5 -4.14392 | TCCATATCTTCTAGC CCTTTGACTCT ATCT AGTGTCAAAGG TTTTGACGCTTCAAA TERM 2019 1672209 - 1672219 + g 85 -4 -5.53288 | opp_overlap 1672209 GACGCTTCAAACACA TCAA CCT TTGA TTTTTTTAAATTAGG M5005_Spy_1712 1673842 - 1672709 - | transposase M5005_Spy_1713 1674048 - 1673896 - | hypothetical protein TERM 2020 1674036 - 1674062 + g 100 -16.8 -3.0792 | opp_overlap 1674036, overlap 1674026 1674024 1674038 1674040 1674042 GCACATCTAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2021 1674062 - 1674036 - G 100 -16.8 -5.50499 | opp_overlap 1674036 1674026 1674024 1674038 1674040 1674042 GCACATCTAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2022 1674038 - 1674060 + g 100 -15 -3.09505 | opp_overlap 1674036, overlap 1674036 1674026 1674024 1674040 1674042 ACATCTAAAAAAATA GAGAGAACCA AAT TGGTTCTCTC TATTAAATAAGCTCT TERM 2023 1674040 - 1674058 + g 83 -11.8 -3.10522 | opp_overlap 1674036, overlap 1674038 1674036 1674026 1674024 1674042 ATCTAAAAAAATAGA GAGAACCA AAT TGGTTCTC TCTATTAAATAAGCT M5005_Spy_1714 1675160 - 1674093 - | cell surface protein TERM 2024 1674253 - 1674278 + g 93 -9.1 -5.24129 | overlap 1674274 GACAATGAGCGATTT GGAGAGTAAGA CTGT TCTTGCTCTTC TTTTTTATCAGAAGA scpA 1678751 - 1675257 - | C5A peptidase precursor TERM 2025 1675877 - 1675888 + g 70 -3.6 -5.00138 | TACGCTCACGGTAAA CCGG TTGG CTGG TTTTTGGTTTAGATG TERM 2026 1678824 - 1678803 - H 100 -11.7 -4.73613 | opp_overlap 1678807 TGACCATTAAGAAAA GAGAGAATC AAAC GATTCTCTC CTAGCTGTCCATCTG TERM 2027 1679087 - 1679066 - H 100 -13.1 -4.60797 | opp_overlap 1679068 1679070 CTTTTAGACATAAAA GAGAGAACC GATC GGTTCTCTC TTCAGACTGAAGACA TERM 2028 1679068 - 1679085 + H 77 -9.9 -3.04144 | opp_overlap 1679066, overlap 1679070 TTTAGACATAAAAGA GAGAACC GATC GGTTCTC TCTTCAGACTGAAGA TERM 2029 1679105 - 1679130 + H 81 -6.2 -5.00846 | CAGACTGAAGACAAA GTCCTTAGAA TCGCTT TTCTAGGGGC TTTTTATGATATTTA M5005_Spy_1716 1679185 - 1680390 + | transposase TERM 2030 1680536 - 1680512 - g 100 -10.1 -5.38348 | opp_overlap 1680512 AAAAACACTAAAAAA GACAAACACCA AAT CGATGTTTGTC TTCAATCTGTTCTAG M5005_Spy_1717 1680369 - 1680551 + | transposase sic1.01 1681910 - 1680969 - | streptococcal inhibitor of complement TERM 2031 1682045 - 1682066 + r 93 -13.1 -3.38072 | opp_overlap 1682045 CTTCTATACATAAAA GAGAGAACC GACT GGTTCTCTC TTGATGTTCACTCAG TERM 2032 1682066 - 1682045 - R 100 -13.1 -4.60797 | opp_overlap 1682045 CTTCTATACATAAAA GAGAGAACC GACT GGTTCTCTC TTGATGTTCACTCAG emm1.0 1683553 - 1682099 - | M protein TERM 2033 1682555 - 1682596 + g 86 -4.4 -5.38549 | gap 1 TTCACGTGATGCGTC CAAGTCAC-GGCGAAGGCC TTGAC GGCTTGCGTCTGAGATTTG TTTTTCTTCTTTAAC TERM 2034 1683517 - 1683542 + g 74 -4.9 -4.67168 | gap 1, overlap 1683521 CTGTTTTTAATTTTC TAA-GCGAATAG TGT CTATTCGTGTTA TTTTTAGCCATTTTT TERM 2035 1683521 - 1683537 + g 83 -9.5 -3.80746 | overlap 1683517 TTTTAATTTTCTAAG CGAATAG TGT CTATTCG TGTTATTTTTAGCCA mga 1685327 - 1683738 - | trans-acting positive regulator TERM 2036 1684211 - 1684223 + g 70 -3.4 -4.84359 | TGATAGGTTCTTTCT CTGA ACGCA TCAG TTTTTCTACACCTGC TERM 2037 1685234 - 1685256 + g 93 -9.8 -4.69326 | overlap 1685236 TGCTGAGTTCTTTAT CTTTGACGCC AAT GGCGTCAGCG TTTTCTGTTACGTAT TERM 2038 1685236 - 1685254 + g 76 -11 -2.63584 | overlap 1685234 CTGAGTTCTTTATCT TTGACGCC AAT GGCGTCAG CGTTTTCTGTTACGT M5005_Spy_1721 1685712 - 1685897 + | hypothetical protein TERM 2039 1685947 - 1685984 + T 71 -8.7 -2.97146 | opp_overlap 1685947, overlap 1685946 CAAAAGACCAAAAAA CTTCCAATAACTTAG CTCGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT TERM 2040 1685984 - 1685947 - T 100 -10.9 -5.36314 | opp_overlap 1685947 1685946 CAAAAGACCAAAAAA CTTCCAATAACTTAG CTCGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT M5005_Spy_1722 1686254 - 1686003 - | hypothetical protein isp 1687934 - 1686333 - | immunogenic secreted protein TERM 2041 1686904 - 1686917 + g 84 -2.3 -5.72207 | ATCAAGGTATCCAAC TGGCC TAGT GACCA TTTTTTTGCTTTGAG ihk 1689424 - 1688036 - | two component system histidine kinase irr 1690074 - 1689421 - | two-component response regulator TERM 2042 1689465 - 1689482 + g 89 -5.5 -5.40474 | TGCCTGTAATTGTCT TGAGGGG AATA CCCGTCA TTTTTTTACGAAGGT TERM 2043 1690118 - 1690139 + r 81 -5.9 -4.89729 | gap 1, opp_overlap 1690118, overlap 1690126 GTATCAAGCAGCTAA GGATGACATC AAA GG-GTCATCC TTTTTGACTTTTATG M5005_Spy_1726 1691385 - 1690168 - | ABC transporter permease protein TERM 2044 1690424 - 1690434 + g 88 -8.2 -5.14965 | ATAAGCTTACGTCTA GCGC CAA GCGC TTTTTTGATCCCAAT M5005_Spy_1727 1692072 - 1691398 - | ABC transporter ATP-binding protein TERM 2045 1691706 - 1691724 + g 72 -3.1 -5.01732 | gap 1, overlap 1691711 GCTTTAACATCTCTA GGGC-TCG TTTG CGACGCTC TTTTTTAGGAACATT M5005_Spy_1728 1693327 - 1692059 - | periplasmic component of efflux system TERM 2046 1692415 - 1692430 + g 70 -3.2 -4.85177 | GGTCATTGCCACCTT GGCC TTGACCTT GGCC TTTTTCCTCTGCTTT TERM 2047 1693621 - 1693584 - R 76 -2.8 -5.45802 | opp_overlap 1693579 1693584 TTTGGAAAACAAAAA TCATATAACCGTTC GCTCACATAA GCACGGGTATATGA TTTTGTACATTTGCG M5005_Spy_1729 1694154 - 1693750 - | hypothetical protein M5005_Spy_1730 1694477 - 1694181 - | hypothetical protein TERM 2048 1694638 - 1694648 + H 70 -4 -4.98255 | TTGTTTTGTGACCTT GATT TTT AATC TTTTTCTCCTTAAAA M5005_Spy_1731 1694721 - 1694957 + | putative cytoplasmic protein TERM 2049 1694942 - 1694984 + T 71 -8.7 -3.02829 | gap 2, overlap 1694945 CTGGTACTGGGGGTA TAGTCAGATTGGGTAGTTAGA GTT TCTGACT-CCCAATCAG-CTA TGTTAACGGACTATC TERM 2050 1695049 - 1695008 - T 90 -11.8 -3.38272 | opp_overlap 1695010, overlap 1695010 GACTATCACTGATAA CATTCACGCTAAGCCT CATTCTAGCT AGGCTTAGCGTGAATT TTTTTTGCTGACTGG TERM 2051 1695047 - 1695010 - T 95 -14.4 -3.25896 | opp_overlap 1695010, overlap 1695008 CTATCACTGATAACA TTCACGCTAAGCCT CATTCTAGCT AGGCTTAGCGTGAA TTTTTTTTGCTGACT TERM 2052 1695010 - 1695047 + T 100 -14.4 -5.86965 | opp_overlap 1695008 1695010 CTATCACTGATAACA TTCACGCTAAGCCT CATTCTAGCT AGGCTTAGCGTGAA TTTTTTTTGCTGACT TERM 2053 1695074 - 1695111 + T 93 -10.8 -3.92522 | opp_overlap 1695075 1695076 1695080, overlap 1695064 1695075 1695080 GACTGGTTTTTAAAT ATTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAGC TTTATGACATTGCCC TERM 2054 1695110 - 1695075 - T 90 -12.1 -3.34517 | opp_overlap 1695064 1695074 1695075 1695080, overlap 1695076 1695080 ACTGGTTTTTAAATA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2055 1695075 - 1695110 + T 93 -14.3 -2.95192 | opp_overlap 1695075 1695076 1695080, overlap 1695064 1695074 1695080 ACTGGTTTTTAAATA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2056 1695109 - 1695076 - T 100 -15.6 -2.60496 | opp_overlap 1695064 1695075 1695074 1695080, overlap 1695075 1695080 CTGGTTTTTAAATAT TAAAGACTCTATCC TTATTT GGATAGAGTCTTTA GCTTTATGACATTGC TERM 2057 1695080 - 1695105 + T 91 -12 -3.89215 | opp_overlap 1695076 1695075 1695080, overlap 1695064 1695075 1695074 TTTTTAAATATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA TERM 2058 1695105 - 1695080 - T 95 -12 -4.00532 | opp_overlap 1695064 1695080 1695075 1695074, overlap 1695076 1695075 TTTTTAAATATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA prsA 1696162 - 1695233 - | foldase protein PrsA M5005_Spy_1733 1696535 - 1696218 - | hypothetical protein TERM 2059 1696449 - 1696403 - G 71 -5.3 -4.64144 | gap 1, opp_overlap 1696411, overlap 1696411 AATAACTCTCAAAAA TCGTAAAAGGACTGAGTCCCAT CTCT ACAGAACTCAGTCC-TTTACCT TGGCATCTTAGGGAA TERM 2060 1696442 - 1696411 - G 100 -12.4 -4.31329 | opp_overlap 1696411, overlap 1696403 TCAAAAATCGTAAAA GGACTGAGTCCCAT CTCT ACAGAACTCAGTCC TTTACCTTGGCATCT M5005_Spy_1734 1696947 - 1696642 - | streptopain fragment speB 1698145 - 1696949 - | streptococcal pyrogenic exotoxin B M5005_Spy_1736 1698670 - 1698801 + | hypothetical protein TERM 2061 1699656 - 1699667 + G 70 -3 -5.09762 | CGATTCGGATGTTTG TCAA TATG TTGA TTTTGTTTATTCAGC rgg 1699085 - 1699927 + | transcriptional regulator TERM 2062 1699941 - 1699963 + T 84 -6.3 -5.02715 | opp_overlap 1699941 GAGGCTCTTTAAAAA GCTAACGCT CTTAT GGTGTTAGC TTTTTGATTTGGTAT TERM 2063 1700061 - 1700080 + T 83 -6.5 -5.02201 | opp_overlap 1700053 1700061, overlap 1700055 GACAAATCATAAAAA GCAATGA CGACAA TCATTGC TTTTTCTAGTATTTT TERM 2064 1700080 - 1700061 - T 88 -7.2 -5.06735 | opp_overlap 1700061 1700055, overlap 1700053 GACAAATCATAAAAA GCAATGAC GACA ATCATTGC TTTTTCTAGTATTTT spd 1700983 - 1700168 - | phage-associated deoxyribonuclease TERM 2065 1700871 - 1700929 + g 73 -6.8 -4.25104 | CGTGCCAGTGCAGTA TTTTCAAGTGTGACTGTTGTTACAGCCA TTG TGGCTGATACAAGAGCTACCATTGAAAA TTTTACTAGCCGACA M5005_Spy_1739 1701067 - 1701195 + | hypothetical protein M5005_Spy_1740 1701347 - 1701856 + | low temperature requirement C protein TERM 2066 1701896 - 1701858 - T 100 -17 -3.01329 | opp_overlap 1701863, overlap 1701863 CCAACCAACAATAAG CAAAACAAGTCTAGGAAG TGA CTCCCTAGACTTGTTTTT TTGAGGTTATCTGGC TERM 2067 1701863 - 1701891 + T 100 -14.7 -5.48303 | opp_overlap 1701858 1701863 CAACAATAAGCAAAA CAAGTCTAGGAAG TGA CTCCCTAGACTTG TTTTTTTGAGGTTAT TERM 2068 1701891 - 1701863 - T 100 -16.9 -4.61824 | opp_overlap 1701863, overlap 1701858 CAACAATAAGCAAAA CAAGTCTAGGAAG TGA CTCCCTAGACTTG TTTTTTTGAGGTTAT gldA 1703026 - 1701938 - | glycerol dehydrogenase TERM 2069 1702267 - 1702253 - G 72 -8.6 -3.54424 | TGTCAGCGCTGTAAA GCCATT GTG AATGGC ATGTGCAGCAGCCAG mipB 1703751 - 1703083 - | fructose-6-phosphate aldolase pflD 1706136 - 1703764 - | formate acetyltransferase TERM 2070 1704053 - 1704075 + g 70 -7.8 -3.68529 | opp_overlap 1704074, overlap 1704041 CCTCCGACAATCTCA TCTGTTGGTA ATT TAGCAACAGA TTTCAATACTGAAGT TERM 2071 1704672 - 1704693 + g 77 -6.5 -4.5774 | TGCGGGTAATTTCGC GCAGGGTGG CATC CCATGCTGC TTTTAATTCTTCATA TERM 2072 1706365 - 1706346 - R 77 -5.7 -5.00616 | TCTTTTTCTAAAAAA CCACCTC TAACTG GAGATGG TCTCAAGAATTTGGT M5005_Spy_1744 1707695 - 1706391 - | PTS system, cellobiose-specific IIC component M5005_Spy_1745 1708013 - 1707705 - | PTS system, cellobiose-specific IIB component M5005_Spy_1746 1708361 - 1708041 - | PTS system, cellobiose-specific IIA component TERM 2073 1708615 - 1708593 - R 93 -5.5 -5.99154 | gap 1, opp_overlap 1708606 CATCAAACAAAAAAA GCCC-TGACC GTTT GGTCTTGGGC CTCTATAAATATCAT M5005_Spy_1747 1709629 - 1708649 - | sorbitol operon regulator M5005_Spy_1748 1710394 - 1709645 - | DeoR family transcriptional regulator TERM 2074 1709905 - 1709872 - G 70 -8.4 -3.32997 | gap 1, overlap 1709874 TGCCCATAAAGCCAA GATCTTTGTTGAAAC CGTCT GTTCCAACAAAGA-C ACGATTGACATGAAA TERM 2075 1709904 - 1709874 - G 83 -12.1 -3.23047 | overlap 1709872 CCCATAAAGCCAAGA TCTTTGTTGAAAC CGTCT GTTCCAACAAAGA CACGATTGACATGAA M5005_Spy_1749 1710517 - 1711290 + | pyruvate formate-lyase activating enzyme TERM 2076 1711484 - 1711465 - g 100 -13.6 -5.34555 | opp_overlap 1711461 TGATACTACAAAAAA GGCTGGGA ATAC TCCCAGCC TAGGCTTTTCCAAGC M5005_Spy_1750 1711325 - 1711525 + | hypothetical protein secE 1711703 - 1711527 - | preprotein translocase subunit SecE rpmG 1711869 - 1711717 - | 50S ribosomal protein L33 TERM 2077 1711746 - 1711764 + g 79 -6.8 -4.59982 | TGTGTAAGGTATATG TTTTGCAG TAT TTGCAAAA TTTATTTACTTCTAG pbp2A 1714254 - 1711918 - | multimodular transpeptidase-transglycosylase TERM 2078 1713263 - 1713273 + g 70 -3.2 -4.9138 | AGCCCTACTGCTCTA GCTT GCT GAGC TTTTGTTTGGGTAAT TERM 2079 1714163 - 1714175 + g 76 -3.3 -5.18357 | overlap 1714164 TTTTGATTGTGTTGT GGCGT TAA ACGCG TTTTTTGATGCATTA M5005_Spy_1754 1714673 - 1714293 - | translation initiation inhibitor M5005_Spy_1755 1715164 - 1715355 + | putative cytoplasmic protein M5005_Spy_1756 1715249 - 1716250 + | ribosomal large subunit pseudouridine synthase D TERM 2080 1716269 - 1716229 - T 100 -14.9 -3.57792 | opp_overlap 1716231 1716238, overlap 1716230 1716238 TGACGCAGTCTTAAA CGCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGTT TATCTGTTTTCATAG TERM 2081 1716268 - 1716230 - T 100 -18.4 -2.74461 | opp_overlap 1716231 1716238, overlap 1716229 1716238 GACGCAGTCTTAAAC GCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGT TTATCTGTTTTCATA TERM 2082 1716231 - 1716267 + T 100 -19.7 -4.34859 | opp_overlap 1716230 1716229 1716238, overlap 1716238 ACGCAGTCTTAAACG CTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAG TTTATCTGTTTTCAT TERM 2083 1716238 - 1716260 + T 100 -10.6 -4.41177 | opp_overlap 1716238 1716230 1716229, overlap 1716231 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTATCTG TERM 2084 1716260 - 1716238 - T 100 -12.8 -4.17089 | opp_overlap 1716231 1716238, overlap 1716230 1716229 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTATCTG M5005_Spy_1757 1717979 - 1716339 - | hypothetical protein M5005_Spy_1758 1718226 - 1719722 + | dipeptidase B TERM 2085 1719812 - 1719786 - T 100 -13.2 -5.15969 | opp_overlap 1719789 GCTGAAGTCAAAAAA TAAGGTCTCACA CTT TGTGAAACCTTA TCGGTATAGGAGGGG TERM 2086 1719789 - 1719809 + T 72 -8.3 -3.39327 | opp_overlap 1719786 GAAGTCAAAAAATAA GGTCTCACA CTT TGTGAAACC TTATCGGTATAGGAG M5005_Spy_1759 1720371 - 1720207 - | MutR family transcriptional regulator M5005_Spy_1760 1720532 - 1720350 - | MutR family transcriptional regulator TERM 2087 1720628 - 1720645 + r 71 -3.5 -5.08169 | gap 1 CTTTTAATCGTAATC CCTTT-GA TTC TCTAAAGG TTTTTTAAAATCTCT TERM 2088 1720767 - 1720746 - R 84 -5.3 -5.40464 | overlap 1720740 CATGACAAAGAAAAA CAATGTATT TTCC AATACATTA AAAGTCTGTAACCAC TERM 2089 1720813 - 1720855 + r 77 -5 -5.1861 | opp_overlap 1720816, overlap 1720816 ATATCACAACTAAAA AAACAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTGTTC TTTTTTCATAGTAAG TERM 2090 1720816 - 1720852 + r 80 -6.7 -4.68456 | opp_overlap 1720816, overlap 1720813 TCACAACTAAAAAAA CAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTG TTCTTTTTTCATAGT TERM 2091 1720852 - 1720816 - R 93 -7.4 -5.68023 | opp_overlap 1720816 1720813 TCACAACTAAAAAAA CAAAGATGGGATATCA TGAGT CGAAATCCAATCTTTG TTCTTTTTTCATAGT groEL 1722556 - 1720925 - | chaperonin GroEL TERM 2092 1722175 - 1722192 + g 70 -9.9 -2.6462 | overlap 1722156 1722174 1722172 1722178 TGGCTTTCAAGGCTT CAACAGC TGTT GCTGTTG CTGTTTCAATGCCTC groES 1722882 - 1722592 - | co-chaperonin GroES TERM 2093 1722913 - 1722949 + r 100 -13.4 -3.59658 | gap 1, opp_overlap 1722907 1722917, overlap 1722917 TAAAAGAATCTTTAG TAAAGTTAGCACTC-AT GTTC ATCGAGTGCTAACTTTA TATTCTATTTTATCA TERM 2094 1722917 - 1722945 + r 100 -9.8 -4.3821 | gap 1, opp_overlap 1722917, overlap 1722913 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2095 1722945 - 1722917 - R 83 -9.8 -3.75015 | gap 1, opp_overlap 1722917 1722913 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2096 1723016 - 1722991 - R 82 -4.1 -5.49234 | opp_overlap 1722991 1722994 ATAGTCAAGAAAAAA GAAGTTATTTT TGTA AGAATAACCTC TTTTTTTGGTGACAT TERM 2097 1722991 - 1723016 + r 82 -4.1 -5.52986 | opp_overlap 1722991, overlap 1722994 ATAGTCAAGAAAAAA GAAGTTATTTT TGTA AGAATAACCTC TTTTTTTGGTGACAT clpC 1725504 - 1723060 - | negative regulator of genetic competence TERM 2098 1724174 - 1724184 + g 81 -5.4 -5.04987 | ATTGGTGTTAAAGTC TCAG GTG CTGA TTTTTTCACCATGTT ctsR 1725965 - 1725504 - | transcriptional regulator TERM 2099 1726136 - 1726113 - R 93 -7.4 -5.42514 | opp_overlap 1726113 GTAGAAATCAAAAAA GCAGTTGCTG TTTC CAACATCTGC TTCTCTTTAGTTACT csp 1726370 - 1726161 - | cold shock protein M5005_Spy_1766 1726611 - 1726507 - | hypothetical protein M5005_Spy_1767 1727728 - 1726595 - | transposase TERM 2100 1727917 - 1727894 - H 73 -7.5 -3.76125 | overlap 1727897 CTATGGTAAGGTAAA CAAGTAGAG ATTCAA CTCTACTCG CTCTCACATCACCGT TERM 2101 1728191 - 1728155 - H 88 -6 -5.75538 | gap 1, opp_overlap 1728155 1728154, overlap 1728149 CGCAAAAAATAAAAA CCTTGATTTAACAACGT TTTC ACGAAGTTAA-TCAAGG CTTGTTTTGTATATA ahpC 1728685 - 1729245 + | peroxiredoxin reductase (NAD(P)H) ahpF 1729266 - 1730798 + | peroxiredoxin reductase (NAD(P)H) TERM 2102 1730815 - 1730842 + T 100 -13.6 -5.32608 | opp_overlap 1730815 ACAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTTAAATTTTTT TERM 2103 1730842 - 1730815 - T 100 -11.4 -4.2535 | opp_overlap 1730815 ACAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTTAAATTTTTT TERM 2104 1730873 - 1730891 + T 89 -7.4 -5.27923 | opp_overlap 1730866 AAAGAATACGACCTC GGTCAACT GTG AGTTGTCC TTTTTTATAGACTTG hutI 1732121 - 1730856 - | imidazolonepropionase TERM 2105 1732195 - 1732211 + H 70 -7.3 -3.72695 | opp_overlap 1732195 CTCACCCACTCAATA GTTGCGA TCT TTGCAAC TTTGGTAACAACAAT TERM 2106 1733081 - 1733093 + G 70 -7.7 -3.76379 | opp_overlap 1733081 1733080 TGGCCCACAAGGAAT CGTTC ATG GAACG TTTAATACCCTCTTA hutU 1732413 - 1734443 + | urocanate hydratase M5005_Spy_1772 1734532 - 1735431 + | glutamate formiminotransferase M5005_Spy_1773 1735442 - 1736068 + | formiminotetrahydrofolate cyclodeaminase fhs.2 1736086 - 1737759 + | formate--tetrahydrofolate ligase TERM 2107 1737899 - 1737888 - g 74 -4.4 -4.95155 | opp_overlap 1737888, overlap 1737882 TGGAGATTACAAAAA GAGA GAAT TCTC TTATCGTCTCTCAAC TERM 2108 1738362 - 1738322 - g 71 -7.6 -3.90112 | gap 1, opp_overlap 1738326 1738327 1738357, overlap 1738325 TTTGCCTCAATCAAA CAAGCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-CTTA TGGTATAAGACTTAG TERM 2109 1738359 - 1738325 - g 73 -7.1 -4.0825 | gap 1, opp_overlap 1738326 1738327 1738357, overlap 1738322 GCCTCAATCAAACAA GCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-C TTATGGTATAAGACT M5005_Spy_1775 1737781 - 1738377 + | putative cytoplasmic protein M5005_Spy_1776 1738597 - 1739940 + | amino acid permease TERM 2110 1740718 - 1740696 - g 71 -7.6 -3.86346 | CCATTCGCCCACAAA GCGGCCAGTT GGC AACAGCCCGC AATATCCGAAACCTC hutH 1739951 - 1741492 + | histidine ammonia-lyase TERM 2111 1741518 - 1741543 + F 71 -7.5 -3.61178 | ACTTCTTTAACTAGA GGGGCTGTGGC AGAG GTCATGGCCTC TTTAGACTAACTAAC hutG 1741678 - 1742664 + | formimidoylglutamase TERM 2112 1742667 - 1742688 + T 100 -10.2 -4.48175 | opp_overlap 1742667 ACAACATAGCTAAAA CCCTCTGA TTCACT TCAGAGGG TTTTCCTTAGCTTTT TERM 2113 1742688 - 1742667 - T 100 -10.2 -4.28977 | opp_overlap 1742667 ACAACATAGCTAAAA CCCTCTGA TTCACT TCAGAGGG TTTTCCTTAGCTTTT M5005_Spy_1779 1745769 - 1742695 - | LuxR family transcriptional regulator TERM 2114 1743332 - 1743352 + g 73 -8.3 -3.6502 | opp_overlap 1743339 AAGTCAATCGACTGT TGAAGCAGA CGC TCTGCCTCA TTTAACTCCCCAATA TERM 2115 1746313 - 1746295 - g 74 -3.9 -5.14563 | gap 1, opp_overlap 1746299, overlap 1746299 1746310 GTTGGTACTAAAAAA CAAGCTGC TGAA GCAG-TTG CTGACGAAGCAACGC TERM 2116 1746481 - 1746469 - g 71 -6.3 -4.15044 | GTTCTTCCTAAGAAA GAAGT TGC ACTTC TTAACAAACAACGCG TERM 2117 1746619 - 1746607 - g 76 -3.3 -5.23016 | opp_overlap 1746616 AAAGAAGCTAAAAAA CTTGG TAT CCCAG TCGTAGCGATGGTTG rpsB 1746073 - 1746840 + | 30S ribosomal protein S2 tsf 1746974 - 1748014 + | elongation factor Ts TERM 2118 1748067 - 1748042 - T 71 -3.2 -5.11033 | opp_overlap 1748042, overlap 1748044 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTGTCAA TERM 2119 1748042 - 1748067 + T 89 -7.6 -5.24796 | opp_overlap 1748042 1748044 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTGTCAA TERM 2120 1748107 - 1748137 + T 77 -5.4 -4.91109 | opp_overlap 1748110, overlap 1748108 1748110 CAATAAGGAAGCAAA AAACTGATCCTGTG TTT CACAGAATCAGTCA TTTTTATAATCACAG TERM 2121 1748108 - 1748136 + T 77 -8.9 -3.54183 | opp_overlap 1748110, overlap 1748107 1748110 AATAAGGAAGCAAAA AACTGATCCTGTG TTT CACAGAATCAGTC ATTTTTATAATCACA TERM 2122 1748134 - 1748110 - T 100 -13.7 -5.32565 | opp_overlap 1748108 1748107 1748110 TAAGGAAGCAAAAAA CTGATCCTGTG TTT CACAGAATCAG TCATTTTTATAATCA TERM 2123 1748110 - 1748134 + T 89 -11.5 -3.34102 | opp_overlap 1748110, overlap 1748108 1748107 TAAGGAAGCAAAAAA CTGATCCTGTG TTT CACAGAATCAG TCATTTTTATAATCA pepO 1750075 - 1748180 - | neutral endopeptidase TERM 2124 1749341 - 1749327 - G 77 -6.4 -4.57341 | overlap 1749328 AATTCTGTCCAAAAA CGTTCC TCA GGAACA ATAACCTTGTCAGGT TERM 2125 1750251 - 1750281 + r 86 -12.7 -2.6675 | opp_overlap 1750256, overlap 1750256 TTTCGTGACAATCAG CAAAAGCCTGAGG CCTAA CCTCAGGCTTTTA GTTAGTTATCAGCTA TERM 2126 1750256 - 1750276 + r 100 -12.6 -4.51197 | opp_overlap 1750256, overlap 1750251 TGACAATCAGCAAAA GCCTGAGG CCTAA CCTCAGGC TTTTAGTTAGTTATC TERM 2127 1750276 - 1750256 - R 100 -13.3 -4.37527 | opp_overlap 1750256 1750251 TGACAATCAGCAAAA GCCTGAGGC CTA ACCTCAGGC TTTTAGTTAGTTATC dexS 1751911 - 1750283 - | trehalose-6-phosphate hydrolase TERM 2128 1751932 - 1751961 + r 83 -7.9 -4.70583 | opp_overlap 1751930 1751932 1751933, overlap 1751933 1751934 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAACG TTTTCTCTTAGTAAA TERM 2129 1751960 - 1751932 - R 90 -11.2 -3.63744 | gap 1, opp_overlap 1751932 1751933 1751934, overlap 1751930 1751933 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAA-C GTTTTCTCTTAGTAA TERM 2130 1751960 - 1751933 - R 83 -11.4 -2.78032 | opp_overlap 1751932 1751933 1751934, overlap 1751932 1751930 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTCTTAGTAA TERM 2131 1751933 - 1751960 + r 89 -11.4 -3.41627 | opp_overlap 1751932 1751933 1751930, overlap 1751932 1751934 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTCTTAGTAA TERM 2132 1751934 - 1751959 + r 95 -14.9 -2.64253 | opp_overlap 1751932 1751933 1751930, overlap 1751933 1751932 CCTCCCTAAAATAGT TTCAGGAACTG ATCT CAGTTCCTGAA CGTTTTCTCTTAGTA M5005_Spy_1784 1754002 - 1751978 - | PTS system, trehalose-specific IIBC component M5005_Spy_1785 1754213 - 1754926 + | trehalose operon transcriptional repressor TERM 2133 1754932 - 1754966 + T 95 -8.9 -5.12068 | gap 2, opp_overlap 1754939, overlap 1754935 1754939 ACCAAAATAAAGACA GAAAA--AAGCCTTGCA AAA TGCAAGGCTTGCTTTTC TTTTTCTTGACTCTG TERM 2134 1754935 - 1754961 + T 93 -8 -5.42605 | opp_overlap 1754939, overlap 1754932 1754939 AAAATAAAGACAGAA AAAAGCCTTGCA AAA TGCAAGGCTTGC TTTTCTTTTTCTTGA TERM 2135 1754939 - 1754957 + T 100 -13.2 -3.96867 | opp_overlap 1754939, overlap 1754935 1754932 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC TERM 2136 1754957 - 1754939 - T 100 -13.2 -5.51046 | opp_overlap 1754935 1754932 1754939 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC TERM 2137 1755138 - 1755148 + T 73 -4 -5.02476 | AAACTGTAAAGAATG TGAT AAT ATCA TTTTTTAAAAACTCT M5005_Spy_1786 1755372 - 1755205 - | MarR family transcriptional regulator TERM 2138 1756417 - 1756405 - g 79 -4.8 -5.0538 | overlap 1756411 CCTTACCTCAAAAAA CACC AAGAA GGTG CTCCAGGCTTAGCCT M5005_Spy_1787 1755730 - 1756587 + | glyoxalase family protein TERM 2139 1756684 - 1756663 - g 72 -4.5 -4.68655 | gap 1, overlap 1756667 CAACCGCAAAAGAAA TGACGATCCC TAA GGAATC-TCA CCCACACCTCCTTCC TERM 2140 1756807 - 1756797 - g 79 -6.8 -4.64763 | TCAGCTAAAAAAGAA CAGC AAC GCTG GCAAGACATGGCCTC TERM 2141 1757228 - 1757216 - g 72 -3.3 -5.06451 | opp_overlap 1757216 1757217, overlap 1757217 CACCATTTCAAAAAA GGCAC GAG GTGCA TTTCTCACTGCCTGT yaaA 1756629 - 1757360 + | hypothetical protein TERM 2142 1757345 - 1757373 + T 82 -9.8 -3.68725 | gap 1, opp_overlap 1757352, overlap 1757345 1757352 TGAATTTGTCTATAT C-AAAAAAGAGGC CTAG GCCTCTTTTTTAG TCTTTATTCACAATT TERM 2143 1757345 - 1757372 + T 76 -10 -2.80512 | opp_overlap 1757352, overlap 1757345 1757352 TGAATTTGTCTATAT CAAAAAAGAGGC CTAG GCCTCTTTTTTA GTCTTTATTCACAAT TERM 2144 1757352 - 1757365 + T 90 -8.1 -5.34055 | opp_overlap 1757352, overlap 1757345 1757345 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT TERM 2145 1757365 - 1757352 - T 90 -8.1 -5.21709 | opp_overlap 1757352 1757345 1757345 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT nrdG 1758148 - 1757534 - | anaerobic ribonucleoside-triphosphate reductase activating protein M5005_Spy_1790 1758657 - 1758148 - | acetyltransferase M5005_Spy_1791 1759601 - 1758666 - | virulence factor TERM 2146 1758719 - 1758707 - G 77 -7.7 -4.30987 | opp_overlap 1758703 ACTCTCCATAAGAAA GCTGA GAG TCAGC AATCTGTTGACAAAT TERM 2147 1759253 - 1759266 + g 77 -5.3 -4.90778 | opp_overlap 1759245 TGTTAAATCCTGCCA TCAGA AAAG TCTGA TTTTCTTTGGCTAAG M5005_Spy_1792 1759776 - 1759630 - | hypothetical protein TERM 2148 1759913 - 1759883 - R 93 -10.7 -4.06533 | opp_overlap 1759888, overlap 1759888 GAAACCATTAAACAA TAAAAGATTGCTT GCATG AAGCAACCTTTTA AGCATATCATATTTC TERM 2149 1759908 - 1759888 - R 83 -6.2 -5.02606 | opp_overlap 1759888, overlap 1759883 CATTAAACAATAAAA GATTGCTT GCATG AAGCAACC TTTTAAGCATATCAT nrdD 1762156 - 1759958 - | anaerobic ribonucleoside triphosphate reductase TERM 2150 1760244 - 1760258 + g 71 -5 -4.63218 | overlap 1760241 TAGTCCCAAACCGCT TCCAAG GCC TTTGGA TTTTGTTGCAAAACA TERM 2151 1762202 - 1762245 + r 73 -8.5 -3.19808 | gap 1, opp_overlap 1762202, overlap 1762200 1762206 CGACAACTAAAAAAA TCAATATATTGTGT-CAAGT TTTTT GCTCGAACACAATATATTGA TATTAAATTACTTTT TERM 2152 1762245 - 1762202 - R 100 -10 -5.68023 | gap 1, opp_overlap 1762202 1762200 1762206 CGACAACTAAAAAAA TCAATATATTGTG-TCAAG TTTTTTG CTCGAACACAATATATTGA TATTAAATTACTTTT M5005_Spy_1794 1763812 - 1762253 - | hypothetical protein TERM 2153 1763328 - 1763318 - G 73 -6.8 -4.2586 | opp_overlap 1763317 CGATATTAATATAAA TGGC ATA GCCA GTTGAGTAGGATACA TERM 2154 1764198 - 1764184 - R 86 -5.7 -5.6473 | opp_overlap 1764184 1764183, overlap 1764176 ATAACATTAAAAAAA TAGCC CTCAC GGCTA CTTTTTAACATAGTG M5005_Spy_1795 1764530 - 1764225 - | hypothetical protein M5005_Spy_1796 1764961 - 1764542 - | Holliday junction resolvase-like protein TERM 2155 1764701 - 1764687 - G 70 -8.6 -3.31144 | opp_overlap 1764692 1764700, overlap 1764691 CGTTCATCTTGATAA TGGACT GGA AGTCCA AAGAGGTGCTCTATG M5005_Spy_1797 1765227 - 1764958 - | hypothetical protein TERM 2156 1765325 - 1765337 + r 78 -7.7 -4.13767 | opp_overlap 1765325 AGGTATTTAAAAAAA GCTCT ACA AGAGC TTTTAGAGTGCAGCA TERM 2157 1765337 - 1765325 - R 93 -7.7 -5.47821 | opp_overlap 1765325 AGGTATTTAAAAAAA GCTCT ACA AGAGC TTTTAGAGTGCAGCA TERM 2158 1765350 - 1765363 + r 70 -8.1 -3.29187 | overlap 1765346 1765345 1765343 AGCTTTTAGAGTGCA GCACG TAAT CGTGC TTCAGTATTTTCAAT spxA 1765738 - 1765340 - | transcriptional regulator Spx TERM 2159 1765681 - 1765693 + g 77 -7.7 -4.1711 | GCTTATGGGCATTTA GCCAA GTT TTGGC TTTCTTGCAGCTCGT TERM 2160 1765802 - 1765817 + r 100 -7.6 -5.79588 | opp_overlap 1765800 1765802, overlap 1765793 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2161 1765817 - 1765802 - R 71 -7.6 -3.5511 | opp_overlap 1765793 1765802, overlap 1765800 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2162 1766010 - 1766025 + r 73 -4.6 -4.88228 | opp_overlap 1766012, overlap 1766012 AAAATACATTTTAAA AAGCCC TGAA GGGCTC TTTTTAATCTTCAAT TERM 2163 1766012 - 1766023 + r 73 -7.2 -4.05583 | opp_overlap 1766012, overlap 1766010 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA TERM 2164 1766023 - 1766012 - R 83 -7.2 -4.6644 | opp_overlap 1766012 1766010 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA recA 1767165 - 1766029 - | recombinase A cinA 1768525 - 1767254 - | competence damage-inducible protein A TERM 2165 1768601 - 1768575 - R 95 -8.9 -5.15634 | opp_overlap 1768575, overlap 1768595 CATTTTATCAAAAAA TCTTCCAATTC ACGAA GAATTAGAAGA TTCTATTGAAAACAC tag 1769154 - 1768594 - | DNA-3-methyladenine glycosylase ruvA 1769760 - 1769164 - | Holliday junction DNA helicase motor protein TERM 2166 1769353 - 1769369 + g 70 -9.5 -2.73243 | overlap 1769352 GGTATGACCAGTCTC TTGTGGA GCC TCCACAA ATTTGCCAGCTAAGT lmrP 1770982 - 1769762 - | multidrug resistance protein B TERM 2167 1770238 - 1770226 - G 70 -9.1 -3.20349 | overlap 1770224 CTTGGAAACCTAACA CAGCC GTT GGCTG AAAATACAGTTTCAA TERM 2168 1770793 - 1770775 - G 73 -9.6 -3.14132 | CTTTTTTGCGACCAA GAGCATCT GAC AGATGCCC ACCGTATAAAGTTCC mutL 1772975 - 1770993 - | DNA mismatch repair protein TERM 2169 1772538 - 1772528 - G 79 -5.4 -5.00616 | opp_overlap 1772517 1772528 GCGTGTTGTAAAAAA GGTT TTC AACC TTAATTTTGGTTCCA TERM 2170 1773058 - 1773081 + r 79 -5.3 -5.0925 | opp_overlap 1773058 TTGACAGAACAAAAA GATGCCTTC AATATA GAAAGCATC TTTTTCATTTTCAGC TERM 2171 1773081 - 1773058 - R 89 -7.5 -5.24796 | opp_overlap 1773058 TTGACAGAACAAAAA GATGCCTTC AATATA GAAAGCATC TTTTTCATTTTCAGC mutS 1775659 - 1773104 - | DNA mismatch repair protein TERM 2172 1773504 - 1773463 - G 82 -11.2 -3.25823 | gap 1, opp_overlap 1773465, overlap 1773465 GCGTTGCTACATGAA CATTGACTAGACTTGTCAA GTTAG TTGACAAGTCT-GTCAATT CATGATAATGCGTTG TERM 2173 1773502 - 1773465 - G 93 -13.8 -3.19602 | gap 1, opp_overlap 1773465, overlap 1773463 GTTGCTACATGAACA TTGACTAGACTTGTCAA GTTAG TTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2174 1773465 - 1773502 + g 93 -13.8 -3.23395 | gap 1, opp_overlap 1773463 1773465 GTTGCTACATGAACA TTGACTAGACTTGTCAA GTTAG TTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2175 1775624 - 1775592 - G 80 -2.1 -5.54079 | gap 1, opp_overlap 1775592 1775595 CTAAAAAGCAAAAAA GCATCTGGATAATC TTTTTT GATG-TCCAGATAC TGTTGCATTCCAGGA M5005_Spy_1806 1775852 - 1775646 - | putative cytoplasmic protein argR2 1776432 - 1775995 - | arginine repressor argS 1776723 - 1778414 + | arginyl-tRNA synthetase TERM 2176 1778427 - 1778456 + F 100 -11.6 -5.5208 | opp_overlap 1778424 1778427 1778431 TAAGTAATAACATTA CTAAGGCTGTCA CATTTA TGACAGTCTTAG TTTTTTATATTATAA TERM 2177 1778456 - 1778427 - f 76 -10.1 -2.88074 | opp_overlap 1778427, overlap 1778424 1778431 TAAGTAATAACATTA CTAAGGCTGTCAC ATTT ATGACAGTCTTAG TTTTTTATATTATAA uviB 1778502 - 1778810 + | bacteriocin TERM 2178 1778839 - 1778808 - T 93 -9.7 -4.25283 | opp_overlap 1778808 1778814, overlap 1778814 AGTGGGGGACCAAAA TAAAAATACAGGC TGTTTG ACCTGTATTTTTA TTTATCATAATTTCT TERM 2179 1778808 - 1778839 + T 82 -9 -4.04811 | opp_overlap 1778808 1778814, overlap 1778814 AGTGGGGGACCAAAA TAAAAATACAGG CTGTTTGA CCTGTATTTTTA TTTATCATAATTTCT TERM 2180 1778833 - 1778814 - T 82 -4.3 -5.50723 | opp_overlap 1778808 1778814, overlap 1778808 GGACCAAAATAAAAA TACAGGC TGTTTG ACCTGTA TTTTTATTTATCATA TERM 2181 1778814 - 1778833 + T 79 -3.6 -5.40464 | opp_overlap 1778814 1778808, overlap 1778808 GGACCAAAATAAAAA TACAGG CTGTTTGA CCTGTA TTTTTATTTATCATA M5005_Spy_1810 1779709 - 1778837 - | hypothetical protein M5005_Spy_1811 1780687 - 1779752 - | hypothetical protein M5005_Spy_1812 1781591 - 1780650 - | hypothetical protein TERM 2182 1780880 - 1780903 + gr 75 -3 -5.18643 | overlap 1780881 TCACACGCTCTGGAT GGCTGGTAAC AATA GTTGCCTGCA TTTTCTTTTGCTTGG TERM 2183 1781456 - 1781486 + gr 74 -4 -5.09762 | opp_overlap 1781450 1781459, overlap 1781458 1781459 TAGAGAGAATGCCAT AAAGCAGAGAAG CCGAAAT CTTCTCTGCATA TTTTTCTCTTGAAAT TERM 2184 1781458 - 1781484 + gr 73 -6.6 -4.17211 | opp_overlap 1781450 1781459, overlap 1781456 1781459 GAGAGAATGCCATAA AGCAGAGAAG CCGAAAT CTTCTCTGCA TATTTTTCTCTTGAA TERM 2185 1781459 - 1781483 + gr 77 -10.1 -3.09242 | opp_overlap 1781450 1781459, overlap 1781458 1781456 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA TERM 2186 1781483 - 1781459 - GR 87 -10.1 -3.94381 | opp_overlap 1781458 1781456 1781459, overlap 1781450 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA aspS 1783332 - 1781584 - | aspartyl-tRNA synthetase TERM 2187 1782422 - 1782438 + g 70 -9.5 -2.52742 | overlap 1782421 TTGAAGTCATTTCCT TTGACAG TTA CTGTCAA GTCTTGTAAAAGCAT TERM 2188 1783512 - 1783483 - R 78 -7.3 -4.32857 | opp_overlap 1783490, overlap 1783490 TTTTCTAAAGATAAA GCAAAAATACTGA GCCG TCAGTATTTTGAC ATATCAAGTGTCCTC TERM 2189 1783505 - 1783490 - R 83 -6.2 -5.08367 | opp_overlap 1783490, overlap 1783483 AAGATAAAGCAAAAA TACTGA GCCG TCAGTA TTTTGACATATCAAG TERM 2190 1783609 - 1783572 - R 100 -11.5 -4.83243 | gap 1, opp_overlap 1783572 CTTACAGAAAACAAA CAGGTGCAACTCC-CTTC TAA AAAGAGAAGTTACACCTG TTTTAGTGATTATCT TERM 2191 1783572 - 1783609 + r 74 -6.4 -4.38129 | gap 1, opp_overlap 1783572 CTTACAGAAAACAAA CAGGTGCAACT-CCCTT CTAAA AAGAGAAGTTACACCTG TTTTAGTGATTATCT hisS 1784950 - 1783670 - | histidyl-tRNA synthetase TERM 2192 1785104 - 1785075 - H 84 -3.7 -5.61881 | opp_overlap 1785080, overlap 1785076 TTGTAAAAATAAAAA GTTTTGTCAAGTA ACTT TACTTTACAAAAA AGATATGTTATCATA TERM 2193 1785103 - 1785076 - H 73 -7.2 -3.95502 | opp_overlap 1785080, overlap 1785075 TGTAAAAATAAAAAG TTTTGTCAAGTA ACTT TACTTTACAAAA AAGATATGTTATCAT TERM 2194 1785116 - 1785106 - H 76 -4 -5.26316 | overlap 1785108 TTACTTTACAAAAAA GATA TGT TATC ATAGTGAAGTTGATG rpmF 1785170 - 1785352 + | 50S ribosomal protein L32 rpmG 1785368 - 1785517 + | 50S ribosomal protein L33 TERM 2195 1785670 - 1785696 + F 100 -10.9 -5.5762 | opp_overlap 1785670 GGATATTGAAGTTAA GCCCTGTTATC ATTTG GATGGCAGGGC TTTTTTATATTTGGT cadD 1785810 - 1786424 + | cadmium resistance protein cadC 1786406 - 1786774 + | cadmium efflux system accessory protein M5005_Spy_1819 1786825 - 1787748 + | hypothetical protein M5005_Spy_1820 1787814 - 1788566 + | ftsK/SpoIIIE family protein M5005_Spy_1821 1788563 - 1789165 + | hypothetical protein TERM 2196 1789172 - 1789210 + T 84 -5.3 -5.55695 | gap 2 AAGCGTTAATTCCTT GGGGCTG--TGGCTTGCGT TAA GCAAAAGCCAGACAGCCCC TTTTTTATATTCTTA TERM 2197 1789435 - 1789480 + T 77 -8.5 -3.53091 | opp_overlap 1789440 1789445, overlap 1789437 1789438 1789445 AAGTAAAATAATTGA GATGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCGTG TTTAAAAAAACAAAT TERM 2198 1789437 - 1789478 + T 87 -11.1 -3.34398 | opp_overlap 1789440 1789445, overlap 1789435 1789438 1789445 GTAAAATAATTGAGA TGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCG TGTTTAAAAAAACAA TERM 2199 1789438 - 1789477 + T 86 -12.4 -2.60496 | opp_overlap 1789440 1789445, overlap 1789437 1789435 1789445 TAAAATAATTGAGAT GAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTC GTGTTTAAAAAAACA TERM 2200 1789445 - 1789470 + T 89 -6.9 -5.32699 | opp_overlap 1789440 1789445, overlap 1789438 1789437 1789435 ATTGAGATGAGAAAA GCCTATGAAAT GAAC GTTTCAAAGGC TTTTTTCGTGTTTAA TERM 2201 1789470 - 1789445 - T 74 -6.2 -4.51378 | opp_overlap 1789445 1789438 1789437 1789435, overlap 1789440 ATTGAGATGAGAAAA GCCTATGAAA TGAACG TTTCAAAGGC TTTTTTCGTGTTTAA M5005_Spy_1822 1789925 - 1789641 - | transcriptional regulator TERM 2202 1790175 - 1790191 + H 73 -4.5 -4.88405 | overlap 1790170 1790184 1790185 ATAATTATCGTAAGG TTTACAG TCT TTGTAAA TTTTATTTACAACTT TERM 2203 1790973 - 1790983 + G 84 -6.8 -4.84761 | overlap 1790969 ATCGGAGGAGTCCTA GCCA TCT TGGC TTTTTCTAAAAGTAT M5005_Spy_1823 1790376 - 1791218 + | integral membrane protein TERM 2204 1791253 - 1791242 - T 70 -4.4 -4.82901 | GTTTGTTGACAAAAA GTTG ACGC CAAC AAACTAGTGCTCTAT TERM 2205 1791271 - 1791298 + T 100 -9.2 -5.29846 | ACTAGTGCTCTATCT CCCCTTAGATTT TTCA ATATCTGAGGGG TTTTTCTTTGCAATT M5005_Spy_1824 1791906 - 1791265 - | phosphohydrolase M5005_Spy_1825 1792113 - 1792439 + | PadR family transcriptional regulator M5005_Spy_1826 1792426 - 1793013 + | hypothetical protein TERM 2206 1793446 - 1793422 - g 77 -5 -5.00616 | opp_overlap 1793422, overlap 1793425 CTGTTCCTGAAAAAA CTAGCCTCAA TGAAG TTAAGGCAAG TAATGTCCCACATAC M5005_Spy_1827 1793010 - 1794089 + | hypothetical protein TERM 2207 1794111 - 1794129 + T 75 -8.2 -3.79906 | opp_overlap 1794111 1794122 CAAGACAATAAAAAA CTTGACAG AAA TTGTCAAG TTATTGTCAAAATAA TERM 2208 1794129 - 1794111 - T 93 -7.5 -5.64304 | opp_overlap 1794111, overlap 1794122 CAAGACAATAAAAAA CTTGACA GAAAT TGTCAAG TTATTGTCAAAATAA TERM 2209 1794154 - 1794183 + T 100 -7.9 -6.3578 | opp_overlap 1794154 AAATAAGACAAAAAA CAGCATCTAGTGT AACT GCCTTAGATGCTG TTTTTTTTTTGAGGT TERM 2210 1794183 - 1794154 - T 83 -5 -5.57729 | opp_overlap 1794154 AAATAAGACAAAAAA CAGCATCTAGTG TAACTG CCTTAGATGCTG TTTTTTTTTTGAGGT M5005_Spy_1828 1796075 - 1794207 - | phage infection protein M5005_Spy_1829 1796479 - 1796108 - | phage infection protein TERM 2211 1796595 - 1796565 - H 90 -4 -5.84432 | opp_overlap 1796569, overlap 1796566 1796567 1796569 TACAAGAGAAAAAAA TTCACTTTTGGACA TTA TGTCTAAAAGTGTT CAAAAGGAGAGATGG TERM 2212 1796594 - 1796566 - H 76 -7.5 -4.08219 | opp_overlap 1796569, overlap 1796565 1796567 1796569 ACAAGAGAAAAAAAT TCACTTTTGGACA TTA TGTCTAAAAGTGT TCAAAAGGAGAGATG TERM 2213 1796593 - 1796567 - H 83 -11 -3.02491 | opp_overlap 1796569, overlap 1796566 1796565 1796569 CAAGAGAAAAAAATT CACTTTTGGACA TTA TGTCTAAAAGTG TTCAAAAGGAGAGAT TERM 2214 1796569 - 1796591 + H 77 -10 -3.01712 | opp_overlap 1796569 1796567 1796566 1796565 AGAGAAAAAAATTCA CTTTTGGACA TTA TGTCTAAAAG TGTTCAAAAGGAGAG M5005_Spy_1830 1796614 - 1797147 + | TetR family transcriptional regulator TERM 2215 1797285 - 1797255 - T 73 -9.2 -2.94218 | opp_overlap 1797257 1797263, overlap 1797263 ATTTGTTATGAGATA CAAAAAAAGCCTAT TAA ATAGGCTTTTTGTA AGTTTAATCTTAAAA TERM 2216 1797257 - 1797283 + T 75 -9.6 -2.71059 | opp_overlap 1797255 1797263, overlap 1797263 TTGTTATGAGATACA AAAAAAGCCTAT TAA ATAGGCTTTTTG TAAGTTTAATCTTAA TERM 2217 1797263 - 1797277 + T 95 -8.6 -4.94992 | opp_overlap 1797255 1797263, overlap 1797257 TGAGATACAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA TERM 2218 1797277 - 1797263 - T 95 -8.6 -5.76633 | opp_overlap 1797263 1797257, overlap 1797255 TGAGATACAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA rpsD 1797912 - 1797301 - | 30S ribosomal protein S4 M5005_Spy_1832 1798219 - 1798115 - | hypothetical protein M5005_Spy_1833 1799336 - 1798203 - | transposase TERM 2219 1799962 - 1799950 - R 100 -9.1 -5.28942 | TATTGTAAAGAAAAA GCCTC TAT GAGGC AAAAATCAATCTAAA M5005_Spy_1834 1800240 - 1799968 - | hypothetical protein holB 1801624 - 1800257 - | replicative DNA helicase TERM 2220 1801231 - 1801263 + g 91 -13.5 -2.62184 | opp_overlap 1801222 1801233 TTAAAATTTCATCAT AAGCTAGGTTGACAG ATT CTGTCAACCTAGCAA TAATATCACGCAACA TERM 2221 1801261 - 1801233 - G 100 -20.5 -3.43689 | opp_overlap 1801231, overlap 1801222 AAAATTTCATCATAA GCTAGGTTGACAG ATT CTGTCAACCTAGC AATAATATCACGCAA rplI 1802106 - 1801654 - | 50S ribosomal protein L9 M5005_Spy_1837 1804079 - 1802103 - | phosphoesterase, DHH family protein TERM 2222 1802356 - 1802391 + g 85 -4.2 -5.67063 | gap 1, overlap 1802357 1802360 GACAGTATCGTATCT GCAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATGA TTTTTTTCTCCTGCA TERM 2223 1802357 - 1802390 + g 75 -7.7 -3.99153 | gap 1, overlap 1802356 1802360 ACAGTATCGTATCTG CAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATG ATTTTTTTCTCCTGC TERM 2224 1804018 - 1803998 - G 70 -8.3 -3.32844 | overlap 1804000 TTTTTGATTGCATAA TACTGACAC AAA GTGCCAGCA GTCCAAATAAAATCA TERM 2225 1804134 - 1804118 - R 84 -5.8 -5.34555 | TTATACCATAAAAAA GCCCTG AAATA CAGAGC TTCCACTTGCTTTGA gidA 1806068 - 1804170 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA M5005_Spy_1839 1806509 - 1806192 - | phosphohydrolase TERM 2226 1806613 - 1806602 - R 73 -3.6 -5.04325 | overlap 1806603 GCTAAACCATAAAAA GGGC CAAA ACCC TAGAAGATTGCAGGA trmU 1808407 - 1807286 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2227 1807751 - 1807780 + g 72 -10.1 -2.65527 | overlap 1807750 1807749 AGTCATCATGCGACC TTTTTGTGCCGGT AAGT ACTGGCTCAAAAA CTGTTTGAAATTCTT TERM 2228 1807853 - 1807863 + g 71 -6.8 -4.10179 | CGTTGCAAGCCCTGC TCGC TCA GCGA TTTCTCTAACTTCTG TERM 2229 1808444 - 1808472 + H 74 -3.3 -5.21236 | opp_overlap 1808444 1808447, overlap 1808447 TAAGATAGAAAAAGA TAATCATCATATT ATG AATATTATGATTC TTTTTCTTATCAGTT TERM 2230 1808447 - 1808469 + H 72 -5 -4.68512 | opp_overlap 1808444 1808447, overlap 1808444 GATAGAAAAAGATAA TCATCATATT ATG AATATTATGA TTCTTTTTCTTATCA TERM 2231 1808597 - 1808610 + H 76 -2.5 -5.55769 | GGAATGCCAATCATT TTATT GCTC AATAA TTTTTTATTATAAAA sdhB 1808705 - 1809376 + | L-serine dehydratase TERM 2232 1809907 - 1809929 + G 80 -10.6 -3.38812 | overlap 1809905 GCAGAAGTTGGTTCT GCAGCTGC TATGAGT GCAGCTGC TCTTGTTAAAGCAGC sdhA 1809388 - 1810260 + | L-serine dehydratase TERM 2233 1810615 - 1810652 + T 100 -14.5 -4.1552 | opp_overlap 1810620, overlap 1810620 AGACAATTAAATACC AAAAACCTATTGTTAGT AAAT ACTAACAATAGGTTTTA TTTCTTCCAGCCATG TERM 2234 1810620 - 1810647 + T 100 -14.4 -5.09762 | opp_overlap 1810620, overlap 1810615 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG TERM 2235 1810647 - 1810620 - T 100 -14.4 -4.946 | opp_overlap 1810620 1810615 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG M5005_Spy_1843 1811287 - 1810673 - | transglycosylase SLT domain-containing protein TERM 2236 1811067 - 1811080 + g 76 -2.4 -5.41941 | GGAATAGGCTCCGAA GCAA TGCTCT TTGC TTTTTCTTTGCTTTC TERM 2237 1811481 - 1811491 + r 74 -6.8 -4.39318 | opp_overlap 1811466 1811481, overlap 1811462 GTTCTGTATTGAACA GGAC TCA GTCC TTTTAGATTTCGTTC TERM 2238 1811614 - 1811574 - R 100 -12.1 -4.84642 | opp_overlap 1811585 1811586 1811593 CTCAAATGAAGAAAA GTACCTCAATCATTAGATA TTG TATCTAACTTTTGAGGTAC AATTCACTTCTTACT cbiQ 1812459 - 1811659 - | cobalt transport protein cbiO2 1813294 - 1812452 - | cobalt transporter ATP-binding subunit cbiO1 1814160 - 1813270 - | cobalt transporter ATP-binding subunit TERM 2239 1813360 - 1813376 + gr 77 -9.5 -3.29263 | opp_overlap 1813362 ACCTTCTTCTTGAAG CATCTGT ACA ACAGATG TTGTAAAAGGGATAT TERM 2240 1813545 - 1813555 + gr 79 -3.2 -5.4588 | CAGTCAGCTGGTAGT CGTC ACG GATG TTTTTTATAGTTTTG TERM 2241 1814036 - 1814049 + gr 73 -2.3 -5.20606 | ACATGAAACGATACG CCATC TAAT GTTGG TTTTTCTTGGTCTTT M5005_Spy_1847 1814653 - 1814111 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase M5005_Spy_1848 1815692 - 1814667 - | hypothetical protein M5005_Spy_1849 1817031 - 1815742 - | zinc protease M5005_Spy_1850 1818277 - 1817033 - | zinc protease TERM 2242 1817869 - 1817879 + g 78 -2.6 -5.50499 | CTGACTCGATGTAGT TAAT CAA ATTA TTTTTTTCAGTCTCA TERM 2243 1818530 - 1818562 + H 83 -2.2 -5.86609 | opp_overlap 1818539, overlap 1818533 1818534 AACAATTCAATTATT TTGAGATAATTTAT ATTAA ATAAATTATCCTGA TTTTTCTTTTTTTGG hasA 1818708 - 1819967 + | hyaluronan synthase hasB 1820003 - 1821211 + | UDP-glucose 6-dehydrogenase TERM 2244 1822323 - 1822282 - g 100 -20.6 -5.01732 | opp_overlap 1822282 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA TERM 2245 1822282 - 1822323 + G 100 -20.6 -5.4148 | opp_overlap 1822282 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA hasC 1821393 - 1822307 + | UTP--glucose-1-phosphate uridylyltransferase M5005_Spy_1854 1822615 - 1823028 + | putative cytoplasmic protein recF 1823030 - 1824136 + | recombination protein F TERM 2246 1824182 - 1824137 - T 91 -12.3 -3.20382 | gap 1, opp_overlap 1824151, overlap 1824140 1824150 1824151 TCTGATATTCACTAA TAACATCAAAAAAGGGTTCAGT TAA ACTGAGCC-TTTTTTGATATTA TGTGGCGATTAAGAT TERM 2247 1824179 - 1824140 - T 83 -9.6 -3.74361 | gap 1, opp_overlap 1824151, overlap 1824137 1824150 1824151 GATATTCACTAATAA CATCAAAAAAGGGTTCAGT TAA ACTGAGCC-TTTTTTGATA TTATGTGGCGATTAA TERM 2248 1824170 - 1824150 - T 76 -3.9 -5.31545 | opp_overlap 1824151, overlap 1824140 1824137 1824151 AATAACATCAAAAAA GGGTTCAGT TAA ACTGAGCCT TTTTTGATATTATGT TERM 2249 1824151 - 1824169 + T 100 -9.6 -5.30189 | opp_overlap 1824150 1824140 1824137 1824151 ATAACATCAAAAAAG GGTTCAGT TAA ACTGAGCC TTTTTTGATATTATG TERM 2250 1824169 - 1824151 - T 73 -7.4 -3.76487 | opp_overlap 1824151, overlap 1824150 1824140 1824137 ATAACATCAAAAAAG GGTTCAGT TAA ACTGAGCC TTTTTTGATATTATG M5005_Spy_1856 1825024 - 1824191 - | glucose uptake protein TERM 2251 1825233 - 1825211 - R 86 -6.2 -5.47159 | TTTTAATATAAAAAA GAGCTGGCAC AAT ATGTCAGCCC TTAAAGTTACTAAAT guaB 1826737 - 1825256 - | inositol-5-monophosphate dehydrogenase TERM 2252 1826912 - 1826937 + r 81 -10.7 -2.8805 | opp_overlap 1826935 AAAAAATTCATTTGG GTCTTATTTTT AATC AAAAATAAGAC TATATAAAACATAAT trsA 1828067 - 1827045 - | tryptophanyl-tRNA synthetase II TERM 2253 1828130 - 1828104 - R 83 -6.5 -4.84527 | opp_overlap 1828104, overlap 1828106 TTGATATAGCAAAAA GTCCCCACGCT ATTAA AACGTGAGGGC GTTATTACAAGTAAT M5005_Spy_1859 1828284 - 1828159 - | hypothetical protein TERM 2254 1828717 - 1828707 - g 70 -2.6 -5.07652 | TCTTGGAAAACAAAA TTTT ATT AAAA CACTTTATGGTTCTT M5005_Spy_1860 1828486 - 1829358 + | hypothetical protein M5005_Spy_1861 1829437 - 1831056 + | ABC transporter ATP-binding protein TERM 2255 1831075 - 1831102 + F 90 -8.4 -5.1361 | opp_overlap 1831074, overlap 1831077 CTTATGATAAATGAG GTGGCTAAGAAG ATCT CTTCCTAGCCTC TTTTTTAAAATTTGT TERM 2256 1831077 - 1831100 + F 93 -9.6 -4.18259 | opp_overlap 1831074, overlap 1831075 TATGATAAATGAGGT GGCTAAGAAG ATCT CTTCCTAGCC TCTTTTTTAAAATTT TERM 2257 1832277 - 1832297 + G 80 -7.7 -4.37527 | opp_overlap 1832277, overlap 1832282 AAGAAGTGACTCAAA TAAAAGCAG GTT TTGCTTTTA TTTTCCTCATTATAC TERM 2258 1832282 - 1832292 + G 72 -3.2 -5.14626 | opp_overlap 1832277, overlap 1832277 GTGACTCAAATAAAA GCAG GTT TTGC TTTTATTTTCCTCAT M5005_Spy_1862 1831139 - 1833715 + | ABC transporter, permease protein TERM 2259 1834199 - 1834181 - T 100 -10.4 -5.99154 | opp_overlap 1834180 1834179 TACTAAATAAAAAAA TCCTAAGA TTA TCTTAGGA AATATCTTATCACTC TERM 2260 1834312 - 1834298 - T 95 -5 -6.20267 | GGAAAAAGAAAAAAA TTGCCA AAA TGACAA TTGCGATAGTCCGTA M5005_Spy_1863 1835162 - 1834881 - | transposase TERM 2261 1835394 - 1835405 + r 78 -2.2 -5.59534 | AATTCTAGTATATCA GACG AACA TGTC TTTTTTGTTGTACTT TERM 2262 1835613 - 1835599 - R 84 -5.7 -5.5762 | opp_overlap 1835599, overlap 1835592 ATCAAAGATAAAAAA GCACT GTTTT AGTGC TTTTTTTGTATTTAC TERM 2263 1835599 - 1835613 + r 95 -6.4 -5.88197 | opp_overlap 1835599 1835592 ATCAAAGATAAAAAA GCACTG TTT TAGTGC TTTTTTTGTATTTAC M5005_Spy_1864 1836223 - 1835744 - | SPOUT methyltransferase superfamily protein TERM 2264 1836324 - 1836291 - H 89 -13.5 -2.71011 | opp_overlap 1836295 1836299 1836301, overlap 1836295 1836301 ATTTTTCTTCAACTA CTAATAAAAACCTTT GTAC AAAGGTCTTTATTAG TAAAAAGAAAAGTAA TERM 2265 1836320 - 1836295 - H 73 -8.5 -3.27298 | opp_overlap 1836295 1836299 1836301, overlap 1836291 1836301 TTCTTCAACTACTAA TAAAAACCTTT GTAC AAAGGTCTTTA TTAGTAAAAAGAAAA TERM 2266 1836314 - 1836301 - H 79 -5.3 -5.16071 | opp_overlap 1836299 1836295 1836301, overlap 1836295 1836291 AACTACTAATAAAAA CCTTT GTAC AAAGG TCTTTATTAGTAAAA TERM 2267 1836331 - 1836363 + H 100 -19.5 -6.4275 | opp_overlap 1836331 1836336 CTTTATTAGTAAAAA GAAAAGTAATCCACA GGC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2268 1836363 - 1836331 - H 100 -19.5 -4.77036 | opp_overlap 1836331, overlap 1836336 CTTTATTAGTAAAAA GAAAAGTAATCCACA GGC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2269 1836358 - 1836336 - H 100 -13.6 -5.3104 | opp_overlap 1836331, overlap 1836331 TTAGTAAAAAGAAAA GTAATCCACA GGC TGTGGATTAC TTTTCTTTTTTTTAT htrA 1836435 - 1837658 + | protease Do TERM 2270 1837691 - 1837719 + F 100 -17.7 -4.55093 | opp_overlap 1837683 1837693 1837698, overlap 1837698 TATTACATTTTATCA CATAAAACAGTCC AAA GGACTGTTTTATG TTTCTTATTCTATCC TERM 2271 1837717 - 1837693 - f 95 -14.5 -2.80443 | opp_overlap 1837691 1837698, overlap 1837683 1837698 TTACATTTTATCACA TAAAACAGTCC AAA GGACTGTTTTA TGTTTCTTATTCTAT TERM 2272 1837698 - 1837712 + F 100 -10 -4.91194 | opp_overlap 1837693 1837698, overlap 1837691 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT TERM 2273 1837712 - 1837698 - f 100 -10 -4.57353 | opp_overlap 1837698 1837691, overlap 1837693 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT parB 1837717 - 1838523 + | chromosome partitioning protein