TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.609128 %AT, 1601365 nt, 9998 terms. Intergenic: 0.656136 %AT, H2T: 300251 nt, 1654 terms; T2T: 59423 nt, 1069 terms; H2H: 95216 nt, 1306 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|71902667|ref|NC_007296.1| Streptococcus pyogenes MGAS6180, complete genome (length 1897573) TERM 1 1332 - 1312 - g 73 -6.9 -4.14392 | GCGCAAGTTGGAAAA TTTTACGGT GTT ACCGTCAAA GAAATTAAAGCTACT dnaA 202 - 1557 + | chromosomal replication initiation protein TERM 2 1612 - 1586 - f 73 -7.4 -3.73402 | overlap 1588 ATATCTTTTATGAAA TAGTTATCCACA AGT TGTGAACAACCA TTTAGTCTTGGATTC TERM 3 1847 - 1818 - g 70 -2.9 -5.1356 | opp_overlap 1806 1823, overlap 1820 TTTCATCAATAAAAA TTGAAGTCACTTC TACA GGAGTAACTTTAA CAGGGTCTAACGGTC TERM 4 2150 - 2160 + G 71 -6.8 -4.0896 | TTGAAGTCTATTATT GCTG AAA CAGC TTTTGCAGCCAGTTT dnaN 1712 - 2848 + | DNA polymerase III subunit beta TERM 5 2860 - 2873 + F 93 -3.8 -5.97979 | opp_overlap 2860 CTAAGTAAGAAAAAG CTCC CTTTTA GGAG TTTTTTTGTTATTAT M28_Spy0003 2923 - 3120 + | putative cytoplasmic protein M28_Spy0004 3450 - 4565 + | translation-associated GTPase TERM 6 5124 - 5150 + G 90 -8.8 -4.86731 | GCTATTTCGTTAACT CTTGACAGAGTT GTC AATGCTGTCAAG TTTTATTTACAAGAA pth 4590 - 5204 + | peptidyl-tRNA hydrolase TERM 7 6199 - 6185 - g 70 -8.6 -3.29626 | GAAGATTTACAGCAA GGAAAG GCT CTTTCC AATCTTAACTACTTT TERM 8 7262 - 7243 - g 70 -5.8 -4.32034 | overlap 7244 GCAGCATTATGAAAA CTTCAAAG CACG CTTTGAAA ATTACCCTGTTGAGG TERM 9 7502 - 7479 - g 70 -3.2 -4.95957 | overlap 7480 TAAAGGAATTAAAAA CTAAGGTTGA CGTC TTAACCTTAA CAGCTACTCCGATTC TERM 10 7860 - 7884 + G 72 -4.3 -4.67607 | opp_overlap 7862, overlap 7862 CAATCATCGAAACAG GAGTTGACATT TCT AATGTAAACAC TTTGTTTATTGAGAA trcF 5207 - 8710 + | transcription-repair coupling factor M28_Spy0007 8872 - 9144 + | ribosome-associated heat shock protein TERM 11 9327 - 9301 - g 76 -11.1 -2.74605 | opp_overlap 9299 TCTTGTCAAAAGTTA TGTTGATTTTG AAAAG CAAAATCAACA GGTGGTTAAATTAAA divIC 9131 - 9502 + | cell division protein M28_Spy0009 9499 - 9624 + | hypothetical protein TERM 12 10127 - 10102 - g 79 -6.9 -4.57569 | TCATTTGCTCAAAAA GTTCATGCCAC TCAA ATGGCACAAAC AAACCATGGAACTTA M28_Spy0010 9637 - 10923 + | hypothetical protein TERM 13 10971 - 10958 - g 88 -3.9 -5.72053 | TAATGAAATAAAAAA TAAAG CCTA CTTTA AAAATCATAGACATG TERM 14 11005 - 11033 + G 82 -6.1 -4.92363 | TAATAGCCGTATCTG GTGGAGTAGATTC AAT GAATTTATTGCAC TTTTTATACCTGTTT tilS 10920 - 12206 + | tRNA(Ile)-lysidine synthetase hpt 12211 - 12753 + | hypoxanthine-guanine phosphoribosyltransferase TERM 15 13924 - 13894 - g 77 -4.8 -4.87389 | CATGCTAAAAATAAA CCACTTGCAAATGA CGT TAATTTGAAAGTAG TAGCCCAACAGACTC ftsH 12775 - 14754 + | cell division protein TERM 16 14801 - 14752 - f 93 -13.4 -3.33261 | gap 1, opp_overlap 14764, overlap 14764 TCTGAATCTGCAGAA TGAT-ATAAAAAAGCTGAACTTA TAGAT TAAGTTCAGCTTTTTTATCAACA CAATATCCTTGTAAA TERM 17 14788 - 14764 - f 100 -11.6 -5.42131 | opp_overlap 14764, overlap 14752 GAATGATATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA TERM 18 14764 - 14788 + F 100 -11.6 -5.24129 | opp_overlap 14764 14752 GAATGATATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA M28_Spy0014 15012 - 16472 + | amino acid permease TERM 19 16583 - 16619 + T 91 -12.4 -3.16683 | opp_overlap 16579 16587, overlap 16587 AATATTTAAAATTAC CCAACCCCTAGAGAAT TGATT AGTCTCTAGGGGTTGA TTGGTACAATGACAT TERM 20 16587 - 16615 + T 90 -11.8 -3.40371 | opp_overlap 16579 16587, overlap 16583 TTTAAAATTACCCAA CCCCTAGAGAAT TGATT AGTCTCTAGGGG TTGATTGGTACAATG TERM 21 16615 - 16587 - T 89 -11.8 -3.19038 | opp_overlap 16587 16583, overlap 16579 TTTAAAATTACCCAA CCCCTAGAGAAT TGATT AGTCTCTAGGGG TTGATTGGTACAATG M28_Spy0015 16948 - 16814 - | hypothetical protein TERM 22 17013 - 16999 - H 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 23 19296 - 19277 - H 91 -12.2 -3.62096 | opp_overlap 19276 19275 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 24 19988 - 19955 - H 71 -8.9 -3.03412 | overlap 19954 19977 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 25 23014 - 23000 - H 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 26 25297 - 25278 - H 91 -12.2 -3.62096 | opp_overlap 25277 25276 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 27 25989 - 25956 - H 71 -8.9 -3.03412 | overlap 25955 25978 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 28 29738 - 29750 + H 93 -5.5 -6.00086 | opp_overlap 29738 ATAAGGGGGAAAGAA GACGG TTA TCGTC TTTTTTTTGTAATCT sibA 30843 - 32039 + | secreted protein TERM 29 32051 - 32072 + F 100 -11.7 -4.90869 | opp_overlap 32047 CTAACATATTATTTA GGTTAGAAC AGTT GTTCTAACC TTTTTGATTACTCCT prsA 32280 - 33254 + | ribose-phosphate pyrophosphokinase TERM 30 33265 - 33287 + F 100 -12.1 -4.75174 | opp_overlap 33265 ATTAAACTTAACGAA GCCTGAGAT AATAG ATCTCAGGC TTTTTGACTTGAATA TERM 31 33287 - 33265 - f 90 -12.1 -3.43619 | opp_overlap 33265 ATTAAACTTAACGAA GCCTGAGAT AATAG ATCTCAGGC TTTTTGACTTGAATA recO 33440 - 34195 + | DNA repair protein RecO plsX 34298 - 35305 + | putative glycerol-3-phosphate acyltransferase PlsX acpP.1 35298 - 35540 + | acyl carrier protein TERM 32 35544 - 35579 + F 100 -18 -3.53091 | opp_overlap 35547 35550 35556, overlap 35547 35550 35556 CGTTTGACTTAGTTA GAATAATAAAAAGAGC GTAA GCTCTTTTTATTATTC TTTAAAAACGAACCT TERM 33 35547 - 35576 + F 100 -13.9 -3.90744 | opp_overlap 35547 35550 35556, overlap 35544 35550 35556 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 34 35576 - 35547 - f 95 -13.9 -3.36878 | opp_overlap 35547 35544 35550 35556, overlap 35550 35556 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 35 35573 - 35550 - f 90 -11.2 -3.82378 | opp_overlap 35547 35544 35550 35556, overlap 35547 35556 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 36 35550 - 35573 + F 93 -11.2 -4.08557 | opp_overlap 35550 35547 35556, overlap 35547 35544 35556 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 37 35567 - 35556 - f 84 -5.8 -5.34365 | opp_overlap 35550 35547 35544 35556, overlap 35550 35547 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT TERM 38 35556 - 35567 + F 86 -5.8 -5.40014 | opp_overlap 35556 35550 35547, overlap 35550 35547 35544 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT purC 35661 - 36395 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 39 38291 - 38271 - g 72 -4.7 -4.66163 | ACTGTGACTGAAAAA CCAAATCTT GTC ATGACTTGG AATGATGAAACAATT purL 36471 - 40244 + | phosphoribosylformylglycinamidine synthase TERM 40 40267 - 40241 - f 77 -9.6 -3.13177 | opp_overlap 40248, overlap 40248 ATACTTTACAGGGAA GTAAAAAGGTTC AGT GAACCTTTTTAG CCCTCGCCTTGAATT TERM 41 40248 - 40260 + F 82 -7.7 -4.59773 | opp_overlap 40241 40248 ACAGGGAAGTAAAAA GGTTC AGT GAACC TTTTTAGCCCTCGCC TERM 42 40260 - 40248 - f 88 -7.7 -4.89009 | opp_overlap 40248, overlap 40241 ACAGGGAAGTAAAAA GGTTC AGT GAACC TTTTTAGCCCTCGCC purF 40348 - 41859 + | amidophosphoribosyltransferase TERM 43 41986 - 41965 - g 90 -3.8 -6.01369 | gap 1 GAAAGAATAAAAAAA CACGTTGCT CGTAC AG-AACGTG CGGGAGTCATGGGAG purM 41887 - 42909 + | phosphoribosylaminoimidazole synthetase TERM 44 42962 - 42934 - f 73 -9 -3.15008 | overlap 42932 TTTTATAAGAAAGGA GTGTTTAGTTAG TTTGC CTAACTGAACAC GGGATTAAATTTCTA purN 43077 - 43631 + | phosphoribosylglycinamide formyltransferase TERM 45 44238 - 44225 - g 79 -6.7 -4.58395 | CTCAGCCGCTAAAAA TCACG CTAG CGTGA CCGTTGTGGTTGACC TERM 46 45329 - 45315 - g 74 -6.4 -4.42062 | opp_overlap 45314, overlap 45311 GACGCCGCAAACAAA CATGGC TTG ACCATG ATCTTCACAGGTGTG purH 43815 - 45362 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 47 45391 - 45371 - T 93 -6.2 -5.84381 | opp_overlap 45371 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTATTAAAAGA TERM 48 45371 - 45391 + T 79 -4 -5.4505 | opp_overlap 45371 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTATTAAAAGA M28_Spy0028 46544 - 45420 - | autolysin TERM 49 46229 - 46206 - G 76 -9 -3.72695 | gap 1, opp_overlap 46204 46202 46206 AGCGTTTTTATCAAA CCAAGCGATAG CCC CTAT-GCTTGG TGTCTTATTCACAGG TERM 50 46206 - 46229 + g 70 -9 -3.26444 | gap 1, opp_overlap 46206, overlap 46204 46202 AGCGTTTTTATCAAA CCAAGCGATAG CCC CTAT-GCTTGG TGTCTTATTCACAGG TERM 51 47367 - 47390 + G 73 -6.7 -4.27441 | GAGGAATTCTTGGAT GGCGAGGAG TTTTCC CTCTTTGCC TTTGTTAATGGTGAT purD 46650 - 48062 + | phosphoribosylamine--glycine ligase TERM 52 48109 - 48097 - f 79 -9.1 -3.40073 | AGCGTCAGCAATCAA CGACC GAA GGTCG CTCCAAAAAGAAAGA purE 48220 - 48831 + | phosphoribosylaminoimidazole carboxylase catalytic subunit purK 48782 - 49891 + | phosphoribosylaminoimidazole carboxylase ATPase subunit M28_Spy0032 49860 - 51311 + | hypothetical protein purB 51331 - 52623 + | adenylosuccinate lyase TERM 53 52635 - 52650 + F 86 -4.7 -5.63517 | opp_overlap 52624 52635, overlap 52628 52648 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA TERM 54 52650 - 52635 - f 93 -4.7 -6.10295 | opp_overlap 52635 52628 52648, overlap 52624 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA M28_Spy0034 52754 - 53665 + | transcriptional regulator ruvB 53819 - 54889 + | Holliday junction DNA helicase B TERM 55 55312 - 55302 - g 75 -5.4 -4.6902 | overlap 55311 CGATAATGTGAAAAA TCTC AAA GAGA TGTCGCAACATCAAT M28_Spy0036 55027 - 55464 + | protein tyrosine phosphatase M28_Spy0037 55487 - 55888 + | hypothetical protein TERM 56 56060 - 56072 + G 71 -4.1 -5.00616 | overlap 56061 CAAAAAAAGAGTCTA TCGAT ATT ATCGG TTTTTTAAAAAGACG TERM 57 56864 - 56878 + G 70 -2.8 -5.11836 | overlap 56866 TGTCTCATATTTTGG CAGTTA TTC TAACAG TTTTCTTTTCAATCT M28_Spy0038 55885 - 57660 + | acyltransferase TERM 58 57887 - 57867 - f 83 -4.8 -5.48303 | opp_overlap 57867, overlap 57868 ATAATTTGAAAAAAA CTTCACAA ATTTA TTGTGAAA TGATTTACAAAATTT M28_Spy0039 57969 - 60611 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 59 60666 - 60635 - f 91 -11.9 -3.81951 | opp_overlap 60635 GTTGATACCAGGAAA TGATTTCTTATGA TTAAAG TCATAAGAAATCA TTTTATTTTCTAAAT TERM 60 60635 - 60666 + F 100 -12.6 -5.19275 | opp_overlap 60635 GTTGATACCAGGAAA TGATTTCTTATGAT TAAA GTCATAAGAAATCA TTTTATTTTCTAAAT TERM 61 60765 - 60785 + F 79 -9.1 -3.3447 | opp_overlap 60761 60753, overlap 60761 TAACCAGTTAAGTTT CAGAAACTT TTC AGGTTTCTG TTGACTTTAATTGTG adhA 60863 - 61879 + | alcohol dehydrogenase TERM 62 61990 - 61936 - f 91 -11.9 -3.61371 | gap 2, opp_overlap 61941, overlap 61941 AAACTTGATTCCAAA TAAAATAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTATTTTG ATACATTGAAAGTTG TERM 63 61941 - 61985 + F 100 -14 -4.30978 | gap 2, opp_overlap 61941 61936 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTG--ACTCGAGAGTGCTA TTTTGATACATTGAA TERM 64 61985 - 61941 - f 100 -11.8 -4.88918 | gap 2, opp_overlap 61941, overlap 61936 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTA TTTTGATACATTGAA M28_Spy0041 62267 - 63556 + | Na+ driven multidrug efflux pump TERM 65 63543 - 63564 + F 86 -5.9 -5.40474 | opp_overlap 63544, overlap 63544 AAAAGTACCAAGAAA TTACCTTTC ATTA GGAAGGTAG TTTTTTTGAAAAAAT TERM 66 63544 - 63563 + F 70 -7.2 -3.83561 | opp_overlap 63544, overlap 63543 AAAGTACCAAGAAAT TACCTTTC ATTA GGAAGGTA GTTTTTTTGAAAAAA TERM 67 63629 - 63644 + F 71 -7.6 -3.58343 | TTATTATATTGTGGT GCTGTA AAAA TACAGC TTTAGCAATGATACA rpsJ 63755 - 64063 + | 30S ribosomal protein S10 TERM 68 64167 - 64177 + F 79 -4 -5.49568 | CAGAAGTTTTTGTGT TAGA TTT TCTA TTTTTATTTTGAGTT TERM 69 64252 - 64228 - f 70 -2.1 -5.32882 | overlap 64229 64241 64242 TATGAGCACAAAAAA CGCTCGTAAAA AAC TTTTTTGAGCA CAAAAAACGCTCATA TERM 70 64881 - 64853 - g 70 -5.4 -4.40358 | gap 1, overlap 64856 64872 AGTTATCCCAGAAAA GAACGTTATCCTT ATTA AAGG-TAACGTAC CAGGTGCTAAGAAAT TERM 71 64878 - 64856 - g 70 -5.7 -4.32067 | gap 1, overlap 64853 64872 TATCCCAGAAAAGAA CGTTATCCTT ATTA AAGG-TAACG TACCAGGTGCTAAGA rplC 64311 - 64937 + | 50S ribosomal protein L3 rplD 64961 - 65584 + | 50S ribosomal protein L4 TERM 72 65624 - 65611 - g 76 -3.1 -5.28481 | opp_overlap 65618, overlap 65612 GACGTAATCAAAAAA CCAGT TATC ACTGA GAAGTCAATGATTGC rplW 65584 - 65880 + | 50S ribosomal protein L23 rplB 65898 - 66731 + | 50S ribosomal protein L2 TERM 73 66976 - 66958 - g 84 -2.4 -5.83211 | GACGAAAAGAAAAAA GTAATCAA AAC TTGGTCAC GTCGTTCAACGATTT rpsS 66871 - 67149 + | 30S ribosomal protein S19 TERM 74 67207 - 67229 + G 79 -9.2 -3.86106 | overlap 67198 ATGGCTCGTACAGTG CGTGTTTCAC CTC GTAAAACACG TTTAGTACTTGATCT rplV 67165 - 67509 + | 50S ribosomal protein L22 rpsC 67522 - 68175 + | 30S ribosomal protein S3 rplP 68179 - 68592 + | 50S ribosomal protein L16 rpmC 68602 - 68808 + | 50S ribosomal protein L29 rpsQ 68834 - 69094 + | 30S ribosomal protein S17 rplN 69119 - 69487 + | 50S ribosomal protein L14 rplX 69566 - 69871 + | 50S ribosomal protein L24 TERM 75 69867 - 69851 - f 70 -2.2 -5.21709 | opp_overlap 69851 CGTTACAGCAAAAAA TCAGGC GAAGT GCTTGA TTAATCACGAAGGAA rplE 69895 - 70437 + | 50S ribosomal protein L5 TERM 76 70544 - 70531 - g 79 -6.7 -4.56775 | opp_overlap 70531 ACTCGCTGTGAAAAA TGTGG ACGT CCACA TTCAGTTTACCGCAA rpsN 70453 - 70638 + | 30S ribosomal protein S14 TERM 77 70647 - 70683 + F 78 -10.4 -2.60194 | opp_overlap 70642 70647 70649 70654, overlap 70646 70649 70652 70654 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG CTTAATTAAAACGGT TERM 78 70683 - 70647 - f 80 -10.4 -3.01831 | opp_overlap 70647 70646 70649 70652 70654, overlap 70642 70649 70654 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG CTTAATTAAAACGGT TERM 79 70733 - 70721 - f 73 -7.7 -3.84712 | TAAGCTGATACCAAA GTCCT TTA AGGAC AACATTAACTAGTAA rpsH 70789 - 71187 + | 30S ribosomal protein S8 rplF 71390 - 71926 + | 50S ribosomal protein L6 rplR 72031 - 72387 + | 50S ribosomal protein L18 TERM 80 72638 - 72622 - g 73 -9.5 -3.16564 | overlap 72614 AAAAACATGATCGAA GTACCAA TGG TTGGTAC AACAATCCCTCACGA rpsE 72406 - 72900 + | 30S ribosomal protein S5 rpmD 72915 - 73097 + | 50S ribosomal protein L30 rplO 73312 - 73752 + | 50S ribosomal protein L15 secY 73769 - 75073 + | preprotein translocase subunit SecY TERM 81 75071 - 75106 + F 70 -4.2 -4.66163 | gap 1, opp_overlap 75076 75078 75080, overlap 75076 75077 75080 ATGAATACAGCAGAA TAGAATACA-GGTTGAC ATT GTCAACCTTCTATTTTG TTTTTAAATGACAAT TERM 82 75076 - 75101 + F 79 -4.1 -5.2853 | gap 1, opp_overlap 75076 75078 75080, overlap 75071 75077 75080 TACAGCAGAATAGAA TACA-GGTTGAC ATT GTCAACCTTCTA TTTTGTTTTTAAATG TERM 83 75098 - 75078 - f 72 -8.3 -3.46859 | opp_overlap 75077 75076 75071 75080, overlap 75076 75080 CAGCAGAATAGAATA CAGGTTGAC ATT GTCAACCTT CTATTTTGTTTTTAA TERM 84 75096 - 75080 - f 86 -10.9 -3.29569 | opp_overlap 75077 75076 75071 75080, overlap 75078 75076 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT TERM 85 75080 - 75096 + F 100 -10.9 -4.1922 | opp_overlap 75080 75078 75076, overlap 75077 75076 75071 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT adk 75223 - 75861 + | adenylate kinase TERM 86 75899 - 75863 - f 74 -6.2 -4.51765 | gap 1, opp_overlap 75863 75855 75865 75872, overlap 75854 75864 75866 75872 TAGAACTCAAATAAA TTAT-ACTAATCTACTT GCAT AAGTAGATTAGTAATGA TATACTAGTTTAGTC TERM 87 75896 - 75864 - f 73 -8.8 -3.29975 | gap 1, opp_overlap 75863 75855 75865 75872, overlap 75854 75863 75866 75872 AGAACTCAAATAAAT TATACTAATCTACTT GCAT AAGTAGATTAGTA-A TGATATACTAGTTTA TERM 88 75865 - 75896 + F 78 -10.4 -2.69202 | opp_overlap 75854 75864 75863 75866 75872, overlap 75863 75855 75872 GAACTCAAATAAATT ATACTAATCTACTT GCAT AAGTAGATTAGTAA TGATATACTAGTTTA TERM 89 75895 - 75866 - f 93 -13.9 -3.20126 | opp_overlap 75865 75863 75855 75872, overlap 75854 75864 75863 75872 AACTCAAATAAATTA TACTAATCTACTT GCAT AAGTAGATTAGTA ATGATATACTAGTTT infA 75925 - 76197 + | translation initiation factor IF-1 rpmJ 76223 - 76339 + | 50S ribosomal protein L36 TERM 90 76567 - 76549 - g 71 -7.4 -3.93288 | GTGGATGCAATCAAA GTTGAAGG TGA CCTTCGAC GTGAAGTAAACATGA rpsM 76357 - 76722 + | 30S ribosomal protein S13 rpsK 76740 - 77123 + | 30S ribosomal protein S11 TERM 91 77641 - 77631 - g 87 -3.2 -5.72053 | overlap 77634 77636 GAAGGAAACAAAAAA GATG ATG CACC TGTGGGTACATTGGC rpoA 77169 - 78107 + | DNA-directed RNA polymerase subunit alpha rplQ 78122 - 78508 + | 50S ribosomal protein L17 TERM 92 78631 - 78681 + T 100 -12.9 -4.92791 | ATTGTTAATATGTGA CGCTTGTTTATGAAAGGTATCTA AGCTA TAGAAACTTTTTATAAGCAGGCG TTTTGTTGTATTATG TERM 93 78751 - 78737 - T 77 -8.6 -3.70437 | opp_overlap 78736 78734, overlap 78735 78742 AGTAAAACAATAACA CAGAAG CCT CTTCTG ATGCGTTTATAAAGT TERM 94 78890 - 78878 - T 82 -4.1 -5.41746 | overlap 78879 AATGTCCGAAAAAAA CTTGC ATC GCAAA CAGATGCTCAAACTA M28_Spy0071 79238 - 79104 - | hypothetical protein TERM 95 79303 - 79289 - H 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 96 81586 - 81567 - H 91 -12.2 -3.62096 | opp_overlap 81566 81565 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 97 82278 - 82245 - H 71 -8.9 -3.03412 | overlap 82244 82267 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 98 85495 - 85526 + H 100 -10.4 -4.43012 | opp_overlap 85502, overlap 85493 85502 GGCCGCCGGTATACT TGAAAAACAAGGTT TACA AACCTTGTTTTTTG TTTTGATCTTAAGCT TERM 99 85519 - 85502 - H 89 -8.5 -4.64766 | opp_overlap 85493 85495 85502 GGTATACTTGAAAAA CAAGGTT TACA AACCTTG TTTTTTGTTTTGATC TERM 100 85502 - 85519 + H 100 -8.5 -5.83211 | opp_overlap 85502, overlap 85493 85495 GGTATACTTGAAAAA CAAGGTT TACA AACCTTG TTTTTTGTTTTGATC M28_Spy0072 85750 - 85935 + | hypothetical protein M28_Spy0073 86573 - 86881 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase M28_Spy0074 86921 - 87148 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 101 87147 - 87131 - f 70 -4.5 -4.70659 | TGCCAGACCGAAAAA CAAACTA TAA TAGTTTA AAAGGACTTTGCAAG adcR 87258 - 87701 + | MarR family transcriptional regulator adcC 87705 - 88424 + | high-affinity zinc uptake system ATP-binding protein adcB 88378 - 89232 + | high-affinity zinc uptake system membrane protein TERM 102 89266 - 89242 - T 100 -15.9 -5.29445 | opp_overlap 89242 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC TERM 103 89242 - 89266 + T 100 -15.9 -4.57482 | opp_overlap 89242 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC M28_Spy0078 89655 - 89272 - | bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) TERM 104 89442 - 89469 + g 80 -10.6 -3.36878 | CTGAAATGGGAAGGT GCTGCTCTAGCT TAGC AACTAGAGCGGC TTGTAAGTCGATGAG TERM 105 89692 - 89679 - R 90 -8.1 -5.14563 | opp_overlap 89679 CTCCTTATGAAAAAA CGAGC CAGA GCTCG TTTAATCGGTTATCT TERM 106 89679 - 89692 + r 75 -8.1 -3.81259 | opp_overlap 89679 CTCCTTATGAAAAAA CGAGC CAGA GCTCG TTTAATCGGTTATCT tyrS 90962 - 89706 - | tyrosyl-tRNA synthetase TERM 107 91149 - 91167 + G 85 -2.5 -5.86465 | gap 1 GGTGCTATTACGTAC GTTGAGAC TACT GTCT-AAC TTTTTTTATATTGTT pbp1b 91054 - 93366 + | multimodular transpeptidase-transglycosylase PBP 1B TERM 108 93451 - 93491 + F 77 -4.8 -5.1104 | opp_overlap 93451 93453, overlap 93453 TCCAGTTAGGAAGAA CAGCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGCTC TTTTTGTGTCTATTT TERM 109 93453 - 93489 + F 78 -7.4 -4.15325 | opp_overlap 93453 93451, overlap 93451 CAGTTAGGAAGAACA GCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGC TCTTTTTGTGTCTAT rpoB 93630 - 97196 + | DNA-directed RNA polymerase subunit beta rpoC 97287 - 100928 + | DNA-directed RNA polymerase subunit beta' TERM 110 100939 - 100954 + F 85 -6.8 -5.38951 | opp_overlap 100939 AATAATCTCATGAAA GAGTCC TTAG GGGCTC TTTTTTGTCTGAGTT M28_Spy0083 101080 - 101445 + | putative DNA binding protein TERM 111 101501 - 101475 - f 74 -6.8 -4.41817 | opp_overlap 101475, overlap 101470 CAAAATAAGTTAAAA GAAAATATCA CTTCTTC TGATATTTTC TTTTTTTGTTTACGA TERM 112 101475 - 101501 + F 95 -6.8 -5.95539 | opp_overlap 101475 101470 CAAAATAAGTTAAAA GAAAATATCA CTTCTTC TGATATTTTC TTTTTTTGTTTACGA TERM 113 101569 - 101559 - gf 70 -5.4 -4.33105 | opp_overlap 101551, overlap 101560 CAAGCATTAGCAAAA GCTA TTC TAGC AAAAGCTGAACAGGT TERM 114 101619 - 101631 + GF 91 -6.3 -5.42259 | opp_overlap 101619 ATTTTGCCAAGAGCA GATCA ATA TGATC TTTTTTTACGAATAG comYA 101538 - 102476 + | ComG operon protein 1 TERM 115 102577 - 102563 - gf 73 -5.7 -4.56597 | opp_overlap 102548 102567 102570, overlap 102567 TTGCTTTTTTAAAAA GAAGC CAGTT GCTTC AGCTAGATTATGTTC TERM 116 102994 - 103004 + GF 75 -8.2 -3.81575 | TTGAAACTCTATAGT CGGC TAA GCCG TTATCCTTTTTTAGG comYB 102355 - 103446 + | ComG operon protein 2 comYC 103448 - 103774 + | ComG operon protein 3 M28_Spy0087 103749 - 104177 + | ComG operon protein 4 M28_Spy0088 104134 - 104418 + | hypothetical protein comYD 104411 - 104845 + | ComG operon protein 6 M28_Spy0090 104829 - 105155 + | ComG operon protein 6 M28_Spy0091 105208 - 106206 + | adenine-specific methyltransferase TERM 117 106199 - 106210 + F 77 -3 -5.58179 | GGAAACTGAGTAATG TCAA TTAA TTGA TTTTTTGTTATAATA TERM 118 106276 - 106266 - g 75 -5.4 -4.6644 | AAGAGAGGTTAAAAA TGTC AAA GACA ATTGCAATTAATGCA ackA 106265 - 107461 + | acetate kinase TERM 119 107487 - 107511 + F 100 -9.4 -5.28826 | opp_overlap 107487 GTTTTCATAGATTAA CCAAGTAAGG CAACA CTTTACTTGG TTTTTTATGAGGTTT M28_Spy0093 107648 - 107956 + | hypothetical protein proC 108809 - 108039 - | pyrroline-5-carboxylate reductase pepA 109924 - 108857 - | glutamyl aminopeptidase TERM 120 110049 - 110025 - R 93 -7.2 -5.58522 | overlap 110027 CACAGAAAAGAAAAA TCCCAGAGAC TAGAG ATCTCTGGAA GAAGTGTTTGTCTTT M28_Spy0096 110198 - 110034 - | hypothetical protein M28_Spy0097 110380 - 110673 + | hypothetical protein TERM 121 110744 - 110766 + G 70 -9.8 -2.60206 | overlap 110743 110742 110746 GGTGTTATTTTTTAC GGCAGACTGG TGT CCAGACTGTC AATTTATTTATCCTA trx.1 110670 - 110987 + | thioredoxin M28_Spy0099 111005 - 111631 + | tRNA-binding domain-containing protein TERM 122 111681 - 111700 + F 93 -7.2 -5.66338 | opp_overlap 111681 ATGACCAGAAAAAAA GGATTAGG AGCC CTTAATCC TTTTTTCTTATGTTT TERM 123 111700 - 111681 - f 88 -5.8 -5.67967 | gap 1, opp_overlap 111681 ATGACCAGAAAAAAA GGATT-AGG AGC CCTTAATCC TTTTTTCTTATGTTT ssb 111783 - 112178 + | single-strand DNA-binding protein M28_Spy0101 113128 - 112439 - | deoxyadenosine kinase M28_Spy0102 114149 - 113100 - | tRNA-dihydrouridine synthase TERM 124 113977 - 113953 - GR 81 -9.3 -3.86944 | TCCATAACCACCAAA CCAGCACCAAA TTC TTTGGCGATGG TACGAAAGGCAGAAT hslO 114936 - 114064 - | Hsp33-like chaperonin TERM 125 114748 - 114765 + gr 70 -3.4 -4.8622 | opp_overlap 114731, overlap 114731 ACCAATCACTTTGAC GGTGAT TTTACT ATCGCC TTTTTGATTAGCCGC TERM 126 115035 - 115016 - R 79 -4.3 -5.25893 | gap 1, opp_overlap 115016 ATAGACAGTAAAAAA TCCCAGAG AATGA CTC-GGGA TTAAGTTAAGGTGTG rofA 116576 - 115083 - | transcriptional regulator TERM 127 116802 - 116787 - H 74 -3.3 -5.3671 | overlap 116779 AATATAATCAAAAAA TTGTC TTTCTT GACAA TAACGTGGTAAGCTC TERM 128 117773 - 117752 - g 75 -9.5 -3.34947 | GAAGAAGTTCCAGAA GTTCCAAGC GAGA GCTTAGAAC CTGCGCTTCCCCCAT TERM 129 117845 - 117824 - g 75 -9.5 -3.34947 | GAAGAAGTCCCAGAA GTTCCAAGC GAGA GCTTAGAAC CTGCGCTTCCCCCAT TERM 130 117917 - 117896 - g 75 -9.5 -3.34947 | GAAGAAGTCCCAGAA GTTCCAAGC GAGA GCTTAGAAC CTGCGCTTCCCCCAT TERM 131 117989 - 117968 - g 75 -9.5 -3.34947 | GAAGAAGTCCCAGAA GTTCCAAGC GAGA GCTTAGAAC CTGCGCTTCCCCCAT TERM 132 118173 - 118156 - g 73 -8.5 -3.66874 | opp_overlap 118154 118156 CGAAGTCTATGGAAA TCAACAG AACC CTGTTGA TATTGATAAAAAACT sfb1 116807 - 118657 + | fibronectin binding protein 1 TERM 133 118897 - 118922 + F 100 -14.1 -5.1356 | opp_overlap 118893 118897 AAAAGTCGAAATCAA TCGAGACTGTC TTTA GGCAGTCTCGA TTTTTATTGATAAGG TERM 134 118922 - 118897 - f 91 -11.9 -3.56162 | opp_overlap 118897, overlap 118893 AAAAGTCGAAATCAA TCGAGACTGTC TTTA GGCAGTCTCGA TTTTTATTGATAAGG M28_Spy0106 118945 - 119793 + | sortase TERM 135 120116 - 120102 - g 74 -6.4 -4.33739 | CAAAAAATTGCAAAA GAAGCA AGA TGCTCC TCGGGTATCAAACAG cpa 120079 - 122322 + | collagen-binding protein TERM 136 122827 - 122805 - g 70 -5.7 -4.40221 | gap 1 AAATCAAAGGGAAAA TCTCAACTCT ATTA AGAGT-GAGA GGAATTTAAAAAAAT M28_Spy0108 122315 - 122836 + | signal peptidase I M28_Spy0109 122843 - 123895 + | hypothetical protein TERM 137 124546 - 124526 - gf 73 -5.6 -4.56729 | AGTAAAAGATCAAAA CAATTTAA ACCTG TTAAATTG AAGCATCATACAAAG TERM 138 124571 - 124587 + GF 71 -3.8 -4.91109 | ACAAAGTTCGTTGCT TTTTCA ACGTG TGAAAA TTTTTCTACTGACAA eftLSL.B 123896 - 124636 + | hypothetical protein M28_Spy0111 124581 - 125240 + | hypothetical protein TERM 139 125301 - 125332 + T 100 -11.7 -4.58424 | opp_overlap 125297 AATGAAACTTATTGA CATCTCCATAGTC TTGCTT GACTTTGGAGATG TTTTCTATGCTGATA M28_Spy0112 126604 - 125399 - | AraC family transcriptional regulator TERM 140 127020 - 127039 + G 93 -9.4 -4.74598 | GCTATAAGTTAAGCT TCCTGTTA TCCT TAACAGGA TTTATTTTAGGTTTA prtF2 126989 - 130483 + | fibronectin binding protein TERM 141 130534 - 130513 - T 93 -8.7 -4.76312 | opp_overlap 130513 130514, overlap 130514 GACAATAGCGAAAAA GGGTCCACT TGTT AGTGGACCT CTTTTTCTGGAATCG TERM 142 130513 - 130535 + T 95 -8.5 -4.85599 | gap 1, opp_overlap 130513 130514, overlap 130514 GACAATAGCGAAAAA G-GGTCCACT TGTT AGTGGACCTC TTTTTCTGGAATCGA TERM 143 130514 - 130533 + T 95 -12.2 -4.05067 | opp_overlap 130513 130514, overlap 130513 ACAATAGCGAAAAAG GGTCCACT TGTT AGTGGACC TCTTTTTCTGGAATC TERM 144 130533 - 130514 - T 90 -12.2 -3.44703 | opp_overlap 130514 130513, overlap 130513 ACAATAGCGAAAAAG GGTCCACT TGTT AGTGGACC TCTTTTTCTGGAATC TERM 145 130707 - 130678 - T 100 -10.2 -5.24416 | gap 1, opp_overlap 130701 CAAGCATAATAAAAA GAGTCTGAG-CAA TCATG TTGTCTCAGACTC TGACTGTAATTATGC M28_Spy0114 131246 - 130749 - | hypothetical protein TERM 146 131610 - 131591 - H 83 -2.2 -5.87996 | GAAGCAATAAAAAAA TCATAG TTGTTTGT CTATGA AAACGTTGTCATAAT TERM 147 132210 - 132221 + G 75 -5.8 -4.70887 | opp_overlap 132210 GCAAAAAGGGATTAA GGTG CATA CACC TTTGTTTGTTGCTAC atoE 131734 - 133173 + | short-chain fatty acids transporter M28_Spy0116 134154 - 133243 - | LysR family transcriptional regulator M28_Spy0117 134275 - 135459 + | acetyl-CoA acetyltransferase atoD.2 135414 - 136130 + | acetate CoA-transferase alpha subunit M28_Spy0119 136133 - 136780 + | acetyl-CoA:acetoacetyl-CoA transferase beta subunit M28_Spy0120 137581 - 136901 - | putative DNA-binding protein M28_Spy0121 137755 - 138120 + | translation initiation inhibitor sloR 138157 - 139176 + | PfoR M28_Spy0123 139627 - 139950 + | hypothetical protein TERM 148 140100 - 140084 - g 77 -8 -4.1552 | overlap 140071 GATGCTTTTAACAAA GGCAAC GTCAA GTTGCC ACAAATCGTCCAATA TERM 149 141230 - 141242 + G 71 -6.9 -3.98291 | TTAGCTATTTCAGTA GCCCT ATG GGGGC TTATTTACGGTTCTT TERM 150 141423 - 141435 + G 78 -4.1 -5.27476 | overlap 141419 CGGCCTATACGTCAA GTCTA GCT TGGAC TTTTATTTTATTAGG ntpI 139940 - 141940 + | V-type ATP synthase subunit I ntpK 141942 - 142421 + | V-type ATP synthase subunit K TERM 151 142461 - 142451 - f 71 -3.2 -5.07567 | CTAGATTTTAAAAAA CGGT GAC ACCA CTAACACTATCAAAA ntpE 142489 - 143073 + | V-type sodium ATP synthase subunit E ntpC 143089 - 144087 + | V-type ATP synthase subunit C ntpF 144084 - 144404 + | V-type ATP synthase subunit F TERM 152 144785 - 144813 + G 100 -14.7 -3.92641 | opp_overlap 144791 TCAGGGATCGGTCCA GGAGAACCAGTAG TGA CTACTGGTTGTCC TTTGTCGGTCGAGTT TERM 153 144807 - 144791 - g 80 -10.9 -3.40522 | opp_overlap 144785 ATCGGTCCAGGAGAA CCAGTAG TGA CTACTGG TTGTCCTTTGTCGGT TERM 154 145778 - 145794 + G 70 -8.7 -3.35224 | overlap 145776 GCCATCGGCGCGGTT TCTCCTC CTG GAGGGGA TATTTCAGAGCCTGT ntpA 144605 - 146380 + | V-type ATP synthase subunit A TERM 155 147284 - 147272 - g 72 -3.3 -5.03314 | TTGATCGGGAAAAAA GGGTC AGT GACTC AAATTCCTATTTTAA ntpB 146381 - 147796 + | V-type ATP synthase subunit B ntpD 147820 - 148467 + | V-type ATP synthase subunit D TERM 156 148555 - 148518 - T 72 -2.9 -5.2189 | gap 2 TTAAGTAGTAAAAAA GCAAGCCATCAA--AGG GATTAA CCTAACTGATGACTTGC TTTTTAAGTAGCGTG M28_Spy0132 149849 - 148587 - | toxic anion resistance protein M28_Spy0133 150740 - 149862 - | hypothetical protein TERM 157 152083 - 152097 + G 70 -7.8 -3.6187 | opp_overlap 152073, overlap 152084 GACAACGACCGGTCG TCCACG TCG CGTGGG TTGGTTTGATTCGGT purA 151178 - 152470 + | adenylosuccinate synthetase TERM 158 152489 - 152511 + F 80 -7 -4.64144 | opp_overlap 152489 GTCTAGTATGACAAA GAGTTGGATA GCG TTTCCAGCTC TTTTTACCGCTTGTT TERM 159 153284 - 153272 - g 72 -3.4 -5.09245 | opp_overlap 153272 CTAAAACGACAAAAA CCAA GCAAG TTGG TTTTGTAGGTGGTAT M28_Spy0135 152797 - 153840 + | nucleoside-binding protein TERM 160 153855 - 153884 + F 100 -10.1 -4.72986 | opp_overlap 153854 AAACTGTACAATACC GTCCAGAGTCG TCACTAAC CGACTTTGGAC TTTTTAATAAAGGTG TERM 161 153923 - 153937 + F 74 -5.7 -4.81212 | opp_overlap 153896 CTCCACAGATACGTT GACAG CAGCC CTGTC TTTTATTATAATGAA nusG 153998 - 154552 + | transcription antitermination protein NusG TERM 162 154562 - 154592 + F 100 -14.2 -5.26875 | opp_overlap 154562 CTATAGGCTCTCAAA GGTCTGATGGTA TAAATAT TACCATCAGACC TTTTTTAGTTGGAAG TERM 163 154592 - 154562 - f 100 -14.2 -3.55071 | opp_overlap 154562 CTATAGGCTCTCAAA GGTCTGATGGTA TAAATAT TACCATCAGACC TTTTTTAGTTGGAAG TERM 164 155483 - 155465 - g 74 -6 -4.43844 | opp_overlap 155479 CCATCAGGGACAAAA CAAGGATA TTT TAGCCTTG TCAGAGGTCACTTTT TERM 165 155808 - 155792 - g 72 -4.4 -4.67048 | TGATGCTAAAAGAAA GTCAAC GATTG GTCGAC AAGAAAACGGTCTTT nga 154914 - 156278 + | NAD glycohydrolase M28_Spy0138 156283 - 156768 + | hypothetical protein TERM 166 157182 - 157172 - g 73 -5.4 -4.58663 | AGTACTTGCTAAAAA TGGT GAA ACCA TTGAAAATTTTGTTC slo 156783 - 158507 + | streptolysin O TERM 167 158624 - 158594 - f 100 -12.8 -4.48664 | opp_overlap 158594 CAAATACAGAAGAAA GCTTGTCTATGA GATACCT TCATAGACAAGC TTTTTTGATATACTA TERM 168 158594 - 158624 + F 100 -13.5 -5.23316 | opp_overlap 158594 CAAATACAGAAGAAA GCTTGTCTATGAG ATACC TTCATAGACAAGC TTTTTTGATATACTA TERM 169 158882 - 158870 - g 72 -3.3 -5.07486 | GATGGGGAACAAAAA GATCC GTG GGAAC TAGGCTATAACCAAG M28_Spy0140 158762 - 159148 + | hypothetical protein TERM 170 159409 - 159380 - T 70 -2.2 -5.23316 | gap 2 TAGGACAGCAAAAAA GCCCAGGACTGCCT AAAT AGGCA--CCTAAGC TTTTGAGTACTTCAG M28_Spy0141 159676 - 159464 - | hypothetical protein TERM 171 159940 - 159950 + r 83 -6.8 -4.90471 | TTCTCTCCTTTTATA GGCA GTG TGCC TTTTCTGTTTTACCT TERM 172 160032 - 160005 - R 100 -20 -4.88407 | opp_overlap 160005 TTAGCCAATCAAAAA GCCTAAGGCTGC TTAT GCAGCCTTAGGC TTTTCATAACCGTAG TERM 173 160005 - 160032 + r 100 -20 -4.26076 | opp_overlap 160005 TTAGCCAATCAAAAA GCCTAAGGCTGC TTAT GCAGCCTTAGGC TTTTCATAACCGTAG M28_Spy0142 160254 - 160087 - | hypothetical protein M28_Spy0143 160719 - 160429 - | hypothetical protein TERM 174 161104 - 161118 + G 74 -5 -4.78149 | AGGTTAGCAGATCAC GCTTTT TTG AAGAGC TTTTTGGCTTGTGCA metB 160951 - 162342 + | cystathionine beta-lyase TERM 175 162324 - 162335 + F 70 -4.4 -4.75356 | ATTGGCCGATTTTGA GCAA GCAC TTGC TTTTTAAGTCTATTT TERM 176 162352 - 162385 + F 100 -10.3 -5.83226 | overlap 162353 TTTTAAGTCTATTTG TCCAGATTGGCTCTG TTTA CAGAGCAAGTCTGGC TTTTTTTATTAGCTT TERM 177 162353 - 162384 + F 100 -13.8 -4.07495 | overlap 162352 TTTAAGTCTATTTGT CCAGATTGGCTCTG TTTA CAGAGCAAGTCTGG CTTTTTTTATTAGCT leuS 162554 - 165055 + | leucyl-tRNA synthetase TERM 178 165173 - 165150 - f 100 -14 -4.88067 | opp_overlap 165150 ACTCATCTAGAAAAA CCACAAGAAC CTTC GTTCTTGTGG TTTTTAATCGTTGTT TERM 179 165150 - 165173 + F 100 -14 -4.83593 | opp_overlap 165150 ACTCATCTAGAAAAA CCACAAGAAC CTTC GTTCTTGTGG TTTTTAATCGTTGTT TERM 180 165419 - 165388 - g 72 -8.8 -3.53811 | CCTAGCTCCCCTAAA CTGGTTCTCGCAAA ATAT TTTGCAAAACCCAG CGTTCTTTGTAGGTC TERM 181 166070 - 166086 + G 73 -7.3 -3.96696 | overlap 166080 ATTTTCCATGATACT GTTGTTG CGT CAGCAAC TTTGATGTTGGTCTT TERM 182 166533 - 166555 + G 73 -7.1 -4.06148 | gap 1 ATAAACGTGGTGGCT GGAAAGCAGC GGTA GCT-CTTTCC TTTATCTCAGGTATT ulaA 165362 - 166795 + | ascorbate-specific PTS system enzyme IIC M28_Spy0147 166866 - 167144 + | PTS system, 3-keto-L-gulonate specific IIB component M28_Spy0148 167267 - 167752 + | PTS system, 3-keto-L-gulonate specific IIA component ulaD 167861 - 168523 + | 3-keto-L-gulonate-6-phosphate decarboxylase M28_Spy0150 168486 - 169391 + | putative L-xylulose 5-phosphate 3-epimerase araD 169393 - 170097 + | L-ribulose-5-phosphate 4-epimerase TERM 183 170171 - 170193 + G 89 -9.9 -4.19258 | TGTTAATCATTGTTT GGGCAAGTC CTTTT GACTTGTCC TTTTCGATGAACTGT M28_Spy0152 170155 - 170301 + | hypothetical protein TERM 184 171478 - 171496 + G 80 -2.4 -5.65513 | overlap 171480 TGTAAGGCGCTCGTT TACCGTAA AGC TTATGGGA TTTTTTTAGTTAATC M28_Spy0153 170422 - 172068 + | BigG family transcription antiterminator TERM 185 172291 - 172273 - f 73 -9 -3.19568 | overlap 172272 TCATTGACAAGAAAG TCTATACT TAA AGTATAGA AACGAAGAACAAATT M28_Spy0154 172321 - 173412 + | putative L-ascorbate 6-phosphate lactonase opuAA 173899 - 175095 + | glycine betaine transport ATP-binding protein TERM 186 175335 - 175324 - g 89 -5.8 -5.4505 | opp_overlap 175298 CTTGCTAAGAAAAAA TGGC CTTT GCCA ACCTTTACCTTGTTA TERM 187 175971 - 175960 - g 81 -5.8 -5.11112 | overlap 175966 AAACCTCAAGAAAAA GCCA AAGC TGGC AAAACCAATAAATGG opuABC 175111 - 176838 + | glycine betaine transport system permease protein TERM 188 176868 - 176887 + F 93 -8.6 -4.75174 | opp_overlap 176861 176868, overlap 176881 ATAGCAAATAGAGAA GTCTAGGA ATTT TCCTAGGC TTTTTAGGTTAACTA TERM 189 177706 - 177674 - g 80 -7.9 -4.32046 | overlap 177679 GCCTCAAAAATGAAA GAAAACTTGATCA ATGACCG TGACCAAGCTTTC CTATCTAAAACGCTC TERM 190 177701 - 177679 - g 74 -4.2 -5.10516 | overlap 177674 AAAAATGAAAGAAAA CTTGATCA ATGACCG TGACCAAG CTTTCCTATCTAAAA polA 176969 - 179611 + | DNA polymerase I M28_Spy0158 179798 - 180253 + | CoA binding protein perR 180305 - 180772 + | ferric uptake regulation protein TERM 191 180814 - 180787 - f 77 -8.6 -3.61268 | opp_overlap 180791, overlap 180779 180791 GAGTTAACCCTTAAA TAAAGGCATTAT AAAT ATAGTGCCTTTA CAAATCAAAAACCCC vlg 180929 - 181228 + | Mry TERM 192 182117 - 182127 + G 74 -4 -5.01823 | overlap 182124 AAGACATATGGCATG CTTA CTA TAAG TTTTCTTATTCTTAT M28_Spy0161 181450 - 182784 + | 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase TERM 193 183091 - 183070 - g 70 -9.5 -2.67441 | opp_overlap 183058, overlap 183058 183067 183075 TAAGTCATTAGACTA TCGAATGGC TTCT ACCATTCGA CATAATAGAGCTAGA M28_Spy0162 182777 - 183307 + | ParB-like nuclease TERM 194 183364 - 183386 + T 100 -11.4 -4.74706 | opp_overlap 183361 183358 183364 TATCATTAACAACGA GAGAGAATCA GAT TGGTTCTCTC TTTTTGGATGTTCAA TERM 195 183386 - 183364 - T 74 -9.2 -2.96963 | opp_overlap 183364, overlap 183361 183358 TATCATTAACAACGA GAGAGAATCA GAT TGGTTCTCTC TTTTTGGATGTTCAA M28_Spy0163 183851 - 183636 - | transposase M28_Spy0164 184061 - 183891 - | transposase M28_Spy0165 184460 - 184164 - | transposase M28_Spy0166 184786 - 184493 - | transposase TERM 196 184597 - 184642 + g 77 -4.8 -4.93316 | gap 1, opp_overlap 184606, overlap 184599 184606 TTGTCTCAAATTGAG CAT-GACGAAGTGCGCTCCCA TGTCC TGGGAACGCACTTTCTCCATA TTTTTCATATTCTTG TERM 197 184599 - 184640 + g 73 -7.4 -4.06487 | gap 1, opp_overlap 184606, overlap 184597 184606 GTCTCAAATTGAGCA T-GACGAAGTGCGCTCCCA TGTCC TGGGAACGCACTTTCTCCA TATTTTTCATATTCT TERM 198 184606 - 184632 + g 93 -12.3 -4.02468 | opp_overlap 184606, overlap 184599 184597 ATTGAGCATGACGAA GTGCGCTCCCA TGTCC TGGGAACGCAC TTTCTCCATATTTTT TERM 199 184632 - 184606 - G 95 -14.5 -3.23395 | opp_overlap 184606 184599 184597 ATTGAGCATGACGAA GTGCGCTCCCA TGTCC TGGGAACGCAC TTTCTCCATATTTTT M28_Spy0167 186174 - 184864 - | putative malonate permease TERM 200 187019 - 187047 + G 70 -8.7 -3.28173 | opp_overlap 187034, overlap 187017 187020 GAAGTGGAAAGTCTT GCTGCTGCCGAAG AAG CTGCGGCGGCGGG TGTTGATATTATCAT TERM 201 187020 - 187046 + G 81 -12.2 -2.56181 | opp_overlap 187034, overlap 187019 187017 AAGTGGAAAGTCTTG CTGCTGCCGAAG AAG CTGCGGCGGCGG GTGTTGATATTATCA nadC 186371 - 187270 + | nicotinate-nucleotide pyrophosphorylase TERM 202 187573 - 187617 + T 100 -13.2 -4.62054 | opp_overlap 187579, overlap 187574 187579 TTGGACAAATAATTA TTGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAGTCCTTTTAG TTTTGCTTTGATTCG TERM 203 187574 - 187616 + T 100 -14.5 -3.36148 | opp_overlap 187579, overlap 187573 187579 TGGACAAATAATTAT TGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAGTCCTTTTA GTTTTGCTTTGATTC TERM 204 187579 - 187611 + T 100 -12.2 -4.74084 | opp_overlap 187579, overlap 187574 187573 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAGTCC TTTTAGTTTTGCTTT TERM 205 187611 - 187579 - T 73 -7.8 -3.74658 | opp_overlap 187574 187573 187579 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAGTCC TTTTAGTTTTGCTTT M28_Spy0169 188376 - 187570 - | transposase M28_Spy0170 188930 - 188397 - | transposase TERM 206 188821 - 188846 + g 70 -7.7 -3.75665 | overlap 188822 TTGAGATCGGATTCT GCCATATCAAA CTTT TTTGATATGGA TTTAATGGACTCTCC TERM 207 188822 - 188845 + g 80 -11.2 -2.85078 | overlap 188821 TGAGATCGGATTCTG CCATATCAAA CTTT TTTGATATGG ATTTAATGGACTCTC TERM 208 188963 - 188920 - G 100 -7.6 -5.63504 | gap 1, opp_overlap 188933, overlap 188922 AATTTCATAAAAAAA TAGCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC-A GTTCAAGGGCTATTT TERM 209 188962 - 188922 - G 100 -12.7 -4.45201 | opp_overlap 188933, overlap 188920 TTTCATAAAAAAATA GCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC AGTTCAAGGGCTATT M28_Spy0171 189861 - 188998 - | integral membrane protein M28_Spy0172 189898 - 190083 + | hypothetical protein TERM 210 190135 - 190124 - g 79 -5.8 -4.91977 | TATCAAAACAGAAAA GCAC ACCG GTGC ACGCTTGGGCGAAAT tgt 190080 - 191222 + | queuine tRNA-ribosyltransferase TERM 211 191240 - 191275 + F 100 -9.8 -5.71712 | AAAAATGCTATGATC CTGGAACTGAGGGCGA TCTA TCGTCTTTGGTTTCAG TTTTTTTGTATAGAC M28_Spy0174 191439 - 191750 + | zinc finger protein M28_Spy0175 191754 - 192290 + | hypothetical protein TERM 212 192325 - 192356 + F 100 -16 -4.76041 | opp_overlap 192327 TTAAGTTGTGTTGAA CAGGTCTTGGCAGA TTTA TCTGCTAGGACCTG TTTTTGGTGGGTCTC M28_Spy0176 192433 - 193212 + | metal-dependent hydrolase M28_Spy0177 193188 - 193727 + | tRNA-specific adenosine deaminase M28_Spy0178 195573 - 194341 - | transglutaminase/protease-like protein TERM 213 194442 - 194430 - G 71 -6.3 -4.20932 | opp_overlap 194428 194430 AATACTGATTGAAAA GGTTA TGA TAACC TGTTTGATTCGTCGT TERM 214 195032 - 195042 + g 83 -3.2 -5.58179 | CTGCCTGATTGATAG GCTT CAA AGGC TTTTTTATTGTAGTC M28_Spy0179 195615 - 195722 + | putative cytoplasmic protein TERM 215 195715 - 195728 + F 71 -5.3 -4.4959 | AAAATGAAGCTATGC TCACT TGAA AGTGA TTTTACTTAGTTGGA speG 195973 - 196677 + | exotoxin type G precursor M28_Spy0181 196762 - 196881 + | hypothetical protein TERM 216 196898 - 196909 + F 89 -7.2 -5.2112 | opp_overlap 196897 TTATTACGGTAAAGC GGCC TCAG GGCC TTTTTTCATGATATT M28_Spy0182 196917 - 197036 + | putative cytoplasmic protein TERM 217 197606 - 197616 + G 70 -5.4 -4.41047 | TATTGCTTTTCGCGT GTTC AAA GAAC TTTTGGTTAAAAAAT pgi 197133 - 198482 + | glucose-6-phosphate isomerase TERM 218 198643 - 198596 - T 100 -18.1 -4.43309 | gap 1, opp_overlap 198603 198607, overlap 198600 CAAGGTTAAGTAAAA GCGATAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTAT-GC CAAATTTCAGATAAA TERM 219 198640 - 198600 - T 100 -18.6 -2.80479 | opp_overlap 198603 198607, overlap 198596 GTTAAGTAAAAGCGA TAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTA TGCCAAATTTCAGAT TERM 220 198603 - 198637 + T 100 -18.1 -3.32294 | opp_overlap 198600 198596, overlap 198607 AAGTAAAAGCGATAA TAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTA TTATGCCAAATTTCA TERM 221 198607 - 198633 + T 100 -14.5 -4.30987 | opp_overlap 198600 198596, overlap 198603 AAAAGCGATAATAAA GTGCGCTTCCA GAACA TGGGAGCGCAC TTTATTATGCCAAAT M28_Spy0184 200339 - 198831 - | RofA-related transcriptional regulator TERM 222 200227 - 200208 - G 72 -9.4 -3.08088 | AAATTGTCGAAGATA CTGCTTTA TTTT TAAAGCAG TCAAAGTTGTTTGAG TERM 223 200597 - 200572 - H 86 -8.3 -4.81249 | opp_overlap 200572 TTTTAAATTTAAAAA CCTAACCAGCC GGTT AACTGGTCAGG TTTAAACAAGGGAGG TERM 224 200634 - 200611 - H 87 -13.2 -2.71101 | overlap 200608 GGTTTAAACAAGGGA GGGCACCTAC GAGG ATAGGTGCCC AGGAGATTTATGAAA TERM 225 200681 - 200698 + H 70 -4.1 -4.69464 | overlap 200682 AAACCTATTCTCCCA ACGGTTT AGGT AAACCGC TTTTTAGGATGTTTT TERM 226 200873 - 200856 - H 74 -3.5 -5.2112 | gap 1, opp_overlap 200856 200860, overlap 200860 AAGATGATGAAAAAA GAGATTCT CAA AGAA-CTC TTCTAGTCTTTACGA M28_Spy0185 200892 - 200999 + | putative cytoplasmic protein M28_Spy0186 201027 - 201698 + | integral membrane protein TERM 227 201809 - 201754 - T 100 -18.8 -2.98761 | gap 1, opp_overlap 201757 201771, overlap 201771 AGTAGGATGAAACGA CTCAAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTT-GTT TTCTCTAGTGCTTTG TERM 228 201757 - 201807 + T 100 -26 -4.59027 | opp_overlap 201754 201771, overlap 201771 AGGATGAAACGACTC AAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTG TTTTCTCTAGTGCTT TERM 229 201793 - 201771 - T 100 -15 -5.1286 | opp_overlap 201757 201771, overlap 201754 CAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT TERM 230 201771 - 201793 + T 100 -15 -5.10601 | opp_overlap 201771 201754, overlap 201757 CAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT hasC.2 202702 - 201797 - | UTP-glucose-1-phosphate uridylyltransferase TERM 231 201844 - 201869 + g 72 -9.1 -3.35046 | overlap 201842 GTTGGATGATGTAGG CTTTCAAGTCA TCTT TGACTTGAGGG TGTTTCAGGGCATAA TERM 232 201968 - 201956 - G 73 -7.7 -3.80862 | opp_overlap 201956 AAACTCACGAGCAAA GACAC GCT GTGTC TTATTGAGGGTATCA TERM 233 201956 - 201968 + g 70 -7.7 -3.64487 | opp_overlap 201956 AAACTCACGAGCAAA GACAC GCT GTGTC TTATTGAGGGTATCA TERM 234 202011 - 202021 + g 76 -6.8 -4.36508 | AGTTGAACTTCATTG CCTG CAC CAGG TTCTTGTTTTTCTAA TERM 235 202206 - 202233 + g 77 -7.8 -4.27441 | gap 1 TCCTCGTGAGGAACC CTCATGACGGCAA TAG TTGCAG-CATGAG TTTCTTCATAGTCAT TERM 236 202722 - 202740 + r 71 -8.9 -3.04398 | opp_overlap 202725, overlap 202721 TCTTATTTTAGTGAC GAATGGC TTAAT GCCATTC ATTTTCAGAACGAAA gpsA 203745 - 202729 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 237 203903 - 203917 + H 71 -5.6 -4.57543 | CAGGTGAGCTGTTGT CATGGC TTT GCCCTG TTCTTTTTAGTTATT TERM 238 204135 - 204118 - g 76 -2.1 -5.45726 | gap 1, overlap 204120 204121 GAGATTGCAAAAAAA TATGATGT AGA ACATC-TA GCAGGTCCTCAAGGT M28_Spy0189 204043 - 204492 + | MarR family transcriptional regulator M28_Spy0190 204485 - 206191 + | ABC transporter ATP-binding and permease protein M28_Spy0191 206191 - 207978 + | ABC transporter ATP-binding and permease protein TERM 239 207989 - 208006 + F 90 -8.4 -5.14563 | AATAGATGGTATCAG CTCCGC GTCTTA GCGGAG TTTTTTGGTGAACAA TERM 240 208684 - 208662 - g 79 -4.8 -5.08601 | TGATTTCAAGAAAAA CAACGGTTAT CGC AGATCCGTTG AAATGTGTGAGGAGT M28_Spy0192 208096 - 208863 + | putative cytoplasmic protein TERM 241 208996 - 209008 + G 73 -7.7 -3.80841 | AATTCGTGGTTTCGA GCTTG TTT CAAGC TTTACTAATCCTGAT dut 208973 - 209419 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 242 209452 - 209470 + F 72 -6 -4.31164 | GCTTATGACAGTAGA CCTATTCT TTA AGAGTGGG TTTGTCTTGTCTAGG TERM 243 210787 - 210774 - g 79 -6.7 -4.57569 | opp_overlap 210774 CTATGCTCCTAAAAA TGCCT TGCA AGGCA TTGATATCCCTCAAG radA 209500 - 210861 + | DNA repair protein RadA M28_Spy0195 211047 - 211547 + | carbonic anhydrase TERM 244 211565 - 211580 + F 100 -9 -5.93252 | AGTAGCCAAGTTGTA GAGCTG AATT CAGCTC TTTTTTATTTTTAAA M28_Spy0196 211642 - 212388 + | hypothetical protein TERM 245 212405 - 212422 + F 91 -4.1 -5.78622 | opp_overlap 212400 212405 CAAAATAACATAAAA TCAGCTT TTTA GGGCTGA TTTTTTTTCGCCTAA gltX 212571 - 214016 + | glutamyl-tRNA synthetase TERM 246 214079 - 214102 + F 86 -6.1 -5.39755 | opp_overlap 214079 214082 GTCACGACAACGAAA GATTGAAGA TTAAGT TCTTCAGTC TTTTTTATCGTTATC fasB 214411 - 215757 + | sensory transduction protein kinase TERM 247 215900 - 215910 + G 70 -5.4 -4.4078 | opp_overlap 215907 TGCTAATATGATATT TGAC AAA GTCA TTTTGATTGACCAAC fasC 215754 - 217037 + | sensory transduction protein kinase fasA 217041 - 217781 + | response regulator TERM 248 217837 - 217816 - f 77 -5.9 -4.77036 | opp_overlap 217816 217814 TTTTAGGACGAAAAA GCAACATTT CAGG AAATGATGC TCTTATTGAAACATT TERM 249 218005 - 217995 - f 71 -5.4 -4.52589 | opp_overlap 217995 217988 GCTCGGCAGACAAAA TGAC GAT GTCA GTTGTCTTTGTTTGG TERM 250 218057 - 218070 + F 100 -9.5 -5.1675 | opp_overlap 218056 218057 AAATCAGTATCAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA TERM 251 218070 - 218057 - f 73 -9.5 -2.89138 | opp_overlap 218057, overlap 218056 AAATCAGTATCAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA rnpA 218321 - 218680 + | ribonuclease P TERM 252 219031 - 219015 - gf 73 -2.2 -5.24129 | GCCCTTTACAAAAAA TATGGG GTTAA CCCTTA TGCTAGCCTCTTACC M28_Spy0202 218646 - 219473 + | hypothetical protein TERM 253 220075 - 220065 - g 70 -8.2 -3.7108 | ATTTGCAGATTGAAA CGCC AGA GGCG GGACGTGTGATTGGT M28_Spy0203 219485 - 220399 + | Jag protein TERM 254 220413 - 220441 + F 90 -8.3 -5.36441 | AGATCCTAAAAAGAA TCTTTGGTAGTTA GTT TAGCTATCGAAGA TTTTTTGTATGGCCA M28_Spy0204 220484 - 220606 + | hypothetical protein rpmH 220714 - 220848 + | 50S ribosomal protein L34 TERM 255 220874 - 220896 + F 79 -5.6 -5.15117 | opp_overlap 220874 TACAACTAAAGTAAA CCAAGAGT GCTCGAG GCTCTTGG TTTTTTAACGTTTTC TERM 256 221158 - 221148 - g 85 -6.8 -5.00851 | ACCAACCAAAGAAAA GCTC ATG GAGC AGTTAAAGGGTGGGA M28_Spy0206 221122 - 221826 + | N-acetylmannosamine-6-phosphate 2-epimerase TERM 257 222949 - 222977 + G 71 -7.5 -3.80174 | opp_overlap 222946, overlap 222963 222965 GGACCTAAAAATGTT GTTCGTACAGG TGCTTTC CCTGTAAGAAC TTCTTATGGGGATCT TERM 258 222965 - 222989 + G 77 -10.1 -3.34398 | opp_overlap 222946, overlap 222949 222963 TTCGTACAGGTGCTT TCCCTGTAAGA ACT TCTTATGGGGA TCTTTACAAAGACAA M28_Spy0207 221875 - 223194 + | N-acetylneuraminate-binding protein TERM 259 223211 - 223253 + G 90 -7.1 -5.26119 | opp_overlap 223252, overlap 223244 TGTTCAGAACAAGTG GCTTCTTTTCAATGCACAT GTCAA ATGGTCACTGGAAAGAAGC TTTTCTTTTTAGAAA TERM 260 223244 - 223258 + G 71 -5 -4.58283 | opp_overlap 223252 223253, overlap 223211 TGTCAAATGGTCACT GGAAAG AAG CTTTTC TTTTTAGAAAAGTTG M28_Spy0208 223195 - 224184 + | N-acetylneuraminate transport system permease protein M28_Spy0209 224197 - 225027 + | N-acetylneuraminate transport system permease protein M28_Spy0210 225184 - 225846 + | hypothetical protein nanH 225858 - 226772 + | N-acetylneuraminate lyase M28_Spy0212 226794 - 227732 + | N-acetylmannosamine kinase TERM 261 227814 - 227860 + T 76 -7.4 -3.93963 | opp_overlap 227814, overlap 227822 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGCCGTTATTTTC TTTGTCAATAATAGT TERM 262 227860 - 227814 - T 82 -7.4 -4.58663 | opp_overlap 227814 227822 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGCCGTTATTTTC TTTGTCAATAATAGT M28_Spy0213 228673 - 227843 - | RpiR family transcriptional regulator TERM 263 229072 - 229092 + GH 71 -7.5 -3.53091 | opp_overlap 229064 CAAGAAATGGGCGTG GCCTACCAT AAT GTGGTTGGC TTTGACCAGGCCACT TERM 264 229547 - 229527 - gH 77 -6.1 -4.59773 | overlap 229528 229529 229545 GGTCACTTTCAAAAA GGCCCTTGA TAT TCAAGAGGC AGCGCAGCACTTGCC tatD 228862 - 229749 + | sec-independent protein translocase protein M28_Spy0215 229700 - 230311 + | ribonuclease M5 ksgA 230401 - 231297 + | dimethyladenosine transferase TERM 265 231539 - 231550 + F 73 -4.4 -4.90266 | opp_overlap 231539 CTACCTCAAAAATCA TCAG TGAT CTGA TTTTTAGTTGATAAA M28_Spy0217 231721 - 232593 + | ribosome-associated GTPase TERM 266 233087 - 233071 - g 77 -5.1 -4.8543 | overlap 233072 GAATGTTTAGAAAAA GTGGCTA CCG TAGCCAA ATGGCGAGATGAAAA TERM 267 233086 - 233072 - g 72 -8.6 -3.50535 | overlap 233071 AATGTTTAGAAAAAG TGGCTA CCG TAGCCA AATGGCGAGATGAAA rpe 232603 - 233265 + | ribulose-phosphate 3-epimerase TERM 268 233339 - 233370 + G 83 -11 -3.72141 | opp_overlap 233339 GTCGGTATTGATAGA GGGAGCCTATTTTT ATTA GAAAATGGGCTTCC TTTGAATATGGCTGT M28_Spy0219 233258 - 233890 + | thiamin pyrophosphokinase TERM 269 234942 - 234926 - g 82 -3.7 -5.52909 | overlap 234928 TAATATCCAAAAAAA TGCTGAT GAC ATCAGTA AAATTTTGGGCAATG M28_Spy0220 233892 - 235163 + | rmuC family protein TERM 270 235427 - 235400 - g 73 -7.8 -3.91911 | gap 1 CTCAGGTTAATCAAA TCACCT-TGCGAA ATG TTCGCCCAGGTGA GCCCAATGATCCAAA cbf 235153 - 236091 + | CMP-binding factor TERM 271 236149 - 236171 + F 100 -9.3 -4.77216 | opp_overlap 236151 TTTTGATGTGCTTAA CACTTATGA TGGTT TCATAAGTG TTTTTGGCTCTTGTT TERM 272 237076 - 237062 - gf 78 -7.1 -4.36914 | TGTGTTTGCAGAAAA CGCTC AATCA GAGCG TGAGCAAATGACCTT TERM 273 237141 - 237131 - gf 73 -5.4 -4.62783 | opp_overlap 237131, overlap 237118 GATTGATGTCAAAAA CAAC AAT GTTG TTGTAGAAGTTGGTA purR 236358 - 237197 + | purine operon repressor prgA 237170 - 239809 + | surface exclusion protein TERM 274 239861 - 239891 + F 84 -6.3 -5.1166 | gap 1, opp_overlap 239861 TCTATTTGACATGAA GTACCGTCT-GTGT TATT ATATTAGACGGTAC TTTTTACTTTTGGTC rpsL 240017 - 240430 + | 30S ribosomal protein S12 rpsG 240451 - 240921 + | 30S ribosomal protein S7 TERM 275 241212 - 241232 + F 100 -9.7 -4.75372 | opp_overlap 241212 CAAATATTTAGATAA CGGGTAGGT CCT GCCTATCCG TTTTTGCTAAATAGT TERM 276 241865 - 241841 - g 77 -8 -4.16443 | opp_overlap 241841, overlap 241837 AGATGAAAGCAGAAA TCTATACCAA CGACC TTGGTACAGA TATCCTTGAAGAAGA fus 241288 - 243366 + | elongation factor G TERM 277 243371 - 243358 - f 76 -4.5 -5.06961 | overlap 243367 243370 ATTAAGAAAAACAAA GGTGA ATAA CCACC ACTAAGAGGTTGAGG TERM 278 243377 - 243403 + F 95 -8.9 -5.21709 | gap 1, opp_overlap 243370 243367 243377 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 279 243403 - 243377 - f 73 -8.9 -3.2613 | gap 1, opp_overlap 243377, overlap 243370 243367 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 280 243508 - 243497 - f 77 -3 -5.48787 | opp_overlap 243497, overlap 243488 AGAACATAGAAAAAA GAAA GCCC TTTC CTATATTTGGTGGGT plr 243687 - 244724 + | glyceraldehyde-3-phosphate dehydrogenase TERM 281 244906 - 244880 - T 70 -3.8 -4.98522 | opp_overlap 244880 AACTGTATACAAAAA GGCTAAGA TGGAAGGGGTG TCTTAGCC TTTTTTTGTCTGACT TERM 282 244880 - 244906 + T 86 -5.2 -5.72616 | opp_overlap 244880 AACTGTATACAAAAA GGCTAAGATG GAAGGGG TGTCTTAGCC TTTTTTTGTCTGACT M28_Spy0228 245066 - 244950 - | hypothetical protein TERM 283 245039 - 245053 + g 85 -5.7 -5.26918 | TCAGTCTTCTGTAAG CTGAC GATAA GTCAG TTTTTTCTGCCATAT M28_Spy0229 246017 - 245208 - | amino acid transport ATP-binding protein TERM 284 245492 - 245507 + gr 73 -5.4 -4.57569 | CAGATAAGGCTCTGG CAATGG CAAC CCGTTG TTTTTGCCCCCCTGA M28_Spy0230 247527 - 245941 - | ABC transporter amino acid-binding protein TERM 285 247489 - 247501 + gH 80 -6.3 -4.81551 | opp_overlap 247489 247487 CAAGGCGACCAAACA GCTAA GGA TTAGC TTTTTCATATAGGTC TERM 286 248453 - 248473 + G 71 -3.9 -4.84311 | opp_overlap 248455, overlap 248444 248457 GCTATTTGGCAAAGT CATTCCTCT GGT AGAGGTAGG TTTTCTTCTGTGGCA M28_Spy0231 247707 - 248678 + | hypothetical protein M28_Spy0232 248675 - 249631 + | hypothetical protein uppP 249697 - 250536 + | undecaprenyl pyrophosphate phosphatase TERM 287 250560 - 250583 + F 100 -12.4 -4.83759 | ATCGTTTAGGATGTT GCGACAGACC TTGG GGACTGTCGC TTTTTAAATTTCCTT TERM 288 250715 - 250698 - g 73 -5.6 -4.62772 | TGGAAATGAAACAAA TTAGCG AGACAA CGCTAA AAATAACAATTAGTA TERM 289 250811 - 250791 - g 82 -4 -5.4505 | TTCCTCAAGAAAAAA CAGAAGAG TTTTT CTATTCTG TGATGGACGAACTCG mecA 250676 - 251443 + | adaptor protein TERM 290 252082 - 252097 + GF 85 -5.4 -5.33848 | overlap 252084 CATTTTGGTCTTGAT TTCTGC TATT GCAGGA TTTTTTCCTTATAAT M28_Spy0235 251450 - 252619 + | undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase rgpG 252589 - 252714 + | putative cytoplasmic protein M28_Spy0237 252741 - 253511 + | ABC transporter ATP-binding protein M28_Spy0238 253606 - 254868 + | ABC transporter-associated protein TERM 291 255113 - 255129 + G 71 -6.5 -4.2704 | AATATGAGGCCAGTC GCCAGCA GGT TGCTGAC TTTATTCATGCTAAA nifS3 254899 - 256125 + | cysteine desulfhydrase nifU 256112 - 256591 + | hypothetical protein M28_Spy0241 256584 - 258002 + | ABC transporter-associated protein TERM 292 258062 - 258079 + T 77 -5.6 -4.90013 | TTATGAGTTGTAGTA CTAACC CCAAGT GGTTAG TTTTTAGTTGCCTTG TERM 293 258106 - 258153 + T 77 -8.7 -3.65224 | opp_overlap 258109 258111 258120, overlap 258110 258111 258113 258120 CTTGAACACGTAAGA TAACATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAATTCA TTATTGGCGTCCCAT TERM 294 258150 - 258109 - T 87 -10.4 -3.71517 | opp_overlap 258106 258110 258111 258113 258120, overlap 258111 258120 GAACACGTAAGATAA CATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAAT TCATTATTGGCGTCC TERM 295 258110 - 258149 + T 100 -13.9 -3.54158 | opp_overlap 258109 258111 258120, overlap 258106 258111 258113 258120 AACACGTAAGATAAC ATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAA TTCATTATTGGCGTC TERM 296 258148 - 258111 - T 100 -17.4 -3.42884 | opp_overlap 258110 258106 258111 258113 258120, overlap 258109 258120 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 297 258111 - 258148 + T 100 -17.4 -2.72013 | opp_overlap 258111 258109 258120, overlap 258110 258106 258113 258120 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 298 258113 - 258146 + T 100 -15.6 -2.89971 | opp_overlap 258111 258109 258120, overlap 258111 258110 258106 258120 ACGTAAGATAACATA TCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGA TAATTCATTATTGGC TERM 299 258139 - 258120 - T 88 -7.9 -4.88711 | opp_overlap 258113 258111 258110 258106 258120, overlap 258111 258109 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT TERM 300 258120 - 258139 + T 83 -7.9 -4.81685 | opp_overlap 258120 258111 258109, overlap 258113 258111 258110 258106 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT M28_Spy0242 259335 - 258154 - | D-alanyl-D-alanine carboxypeptidase TERM 301 258813 - 258791 - G 71 -6.2 -4.16921 | opp_overlap 258791 258790 TAATAACCTTGAAAA GCTTGTGCTG CTG CACCACTAGC GTTTGAAAAATGAGT TERM 302 259474 - 259451 - R 85 -6.8 -5.24003 | gap 1 AATAAAAATGAAAAA GACTG-CAGAA GTA CTCTGTCAGTC AATGTCATACAAAAA TERM 303 259527 - 259510 - R 79 -8.5 -3.89346 | GTGTTATTCTATAAA GAGGTAT TGAC ATACCTC ACAAAACGGTTCCAC dacA2 260735 - 259503 - | D-alanyl-D-alanine carboxypeptidase TERM 304 260376 - 260360 - G 71 -9.5 -2.78679 | opp_overlap 260359 260358, overlap 260359 TTTTTTCAGCTAAAG CAATAGC GGG GCTATTG GCGTTATTAACAACT TERM 305 262342 - 262326 - g 76 -7.3 -4.14392 | GTTGAATTTGCAAAA GCCAAAG AAG CTTTGAC AGCTGAAGGTGTAAC TERM 306 262503 - 262517 + G 73 -10 -2.78384 | opp_overlap 262502 262494 GAAACATCAACTCAC GAAGCC CAA GGCTTC TATGCTGAGACCCCA oppA 261057 - 263036 + | oligopeptide-binding protein TERM 307 263091 - 263039 - f 95 -8.8 -5.26119 | gap 1, opp_overlap 263043 263043 263051 263054, overlap 263042 263043 CGTTGAAAAATAAAA CGAT-GTTCAAAAGAACTTTCTC GTTTATGT GAGGAAGTTCTTTTGAACTATTG AGGATAACTATGAAA TERM 308 263087 - 263042 - f 87 -10.7 -3.43674 | opp_overlap 263043 263043 263051 263054, overlap 263039 263043 TGAAAAATAAAACGA TGTTCAAAAGAACTTTCTC GTTTATGT GAGGAAGTTCTTTTGAACT ATTGAGGATAACTAT TERM 309 263043 - 263086 + F 100 -17.8 -3.04461 | opp_overlap 263042 263039 263043, overlap 263043 263051 263054 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTCGT TTAT GTGAGGAAGTTCTTTTGAAC TATTGAGGATAACTA TERM 310 263086 - 263043 - f 93 -14.2 -2.64578 | opp_overlap 263043 263043 263051 263054, overlap 263042 263039 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTC GTTTATGT GAGGAAGTTCTTTTGAAC TATTGAGGATAACTA TERM 311 263051 - 263078 + F 78 -7.8 -4.1964 | opp_overlap 263043 263042 263039, overlap 263043 263043 263054 AAACGATGTTCAAAA GAACTTTCTCGT TTAT GTGAGGAAGTTC TTTTGAACTATTGAG TERM 312 263864 - 263850 - g 74 -4.3 -4.87665 | opp_overlap 263850, overlap 263857 CCGTAGCTACAAAAA TCCAA AATCA TTGGA TGATATCACCAAGGT oppB 263089 - 264603 + | oligopeptide transport system permease protein oppC 264603 - 265529 + | oligopeptide transport system permease protein oppD 265538 - 266608 + | oligopeptide transport ATP-binding protein TERM 313 266656 - 266638 - g 86 -10.4 -4.01564 | TAAAAGACCTAGAAA TTTCCTTC GGA GAAGGAAA GAAAAAATTTGTTGC oppF 266601 - 267524 + | oligopeptide transport ATP-binding protein TERM 314 267587 - 267609 + T 77 -4.8 -5.13722 | overlap 267566 267593 GATTTAGTTTTGTAT TGTAGAGGAC TAA GTCCTTTTCG TTTTATTTTGATACG TERM 315 267593 - 267603 + T 83 -6.8 -4.83677 | overlap 267566 267587 GTTTTGTATTGTAGA GGAC TAA GTCC TTTTCGTTTTATTTT TERM 316 267715 - 267730 + T 89 -3.3 -5.86465 | AGAACTCGTCTTTGT CCATT TTTTAT AATGG TTTTTTTGTCTTCTT TERM 317 267770 - 267782 + T 77 -3.3 -5.47218 | opp_overlap 267770 GATGCTTCTTTCAAA CGGAG TTC CTCGG TTTTTTTAAGTAAGC M28_Spy0249 267911 - 267765 - | transposase TERM 318 267912 - 267922 + r 82 -5.4 -5.31072 | CTCTTGTTTTCTCAA CAGT ATA ACTG TTTTTCTTATATTGT TERM 319 268161 - 268122 - R 100 -9.4 -5.27923 | opp_overlap 268124 268131, overlap 268124 TAATTTCATAAAAAA TACCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGGTG TAGTTCAAGGCTTTT TERM 320 268124 - 268159 + r 95 -14.9 -2.90571 | opp_overlap 268124 268122, overlap 268131 ATTTCATAAAAAATA CCCCGAACGTTAGAT TTTTTT GTCTAACGTTTGGGG TGTAGTTCAAGGCTT TERM 321 268159 - 268124 - R 100 -12 -4.26475 | opp_overlap 268124 268131, overlap 268122 ATTTCATAAAAAATA CCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGG TGTAGTTCAAGGCTT M28_Spy0250 268420 - 268286 - | hypothetical protein TERM 322 268485 - 268471 - H 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 323 270768 - 270749 - H 91 -12.2 -3.62096 | opp_overlap 270748 270747 CGGCAGGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 324 271460 - 271427 - H 71 -8.9 -3.03412 | overlap 271426 271449 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 325 273672 - 273689 + H 89 -6.3 -5.61824 | opp_overlap 273672, overlap 273663 GGCGGAGTAGAGAGA GGTAGGA AGCG TCCTATC TTTTTTTGCATTTTA TERM 326 273853 - 273828 - g 100 -10.5 -5.32944 | opp_overlap 273829, overlap 273829 TGCATAATGAAAAAA GCAACAGGACA TTAG TGTCCTGTTGT TTTTTTGTGGTTCTC TERM 327 273829 - 273852 + G 100 -14 -5.73339 | opp_overlap 273828 273829 GCATAATGAAAAAAG CAACAGGACA TTAG TGTCCTGTTG TTTTTTTGTGGTTCT TERM 328 273852 - 273829 - g 95 -14 -3.78682 | opp_overlap 273829, overlap 273828 GCATAATGAAAAAAG CAACAGGACA TTAG TGTCCTGTTG TTTTTTTGTGGTTCT comX 273812 - 274393 + | competence-specific sigma factor ComX TERM 329 274691 - 274718 + F 100 -12.2 -5.04597 | AATCATTTGTGATTA TCTTATCAGGAG TTGA CTCTTGATAAGA TTTTTGTATATCAGT M28_Spy0252 274895 - 275479 + | putative lipase TERM 330 275555 - 275539 - g 87 -5.1 -5.4659 | overlap 275529 GAAGACAAAGAAAAA GCTGG TTTTACG CCAGC TGCTGCTTTGAAAAA TERM 331 276545 - 276535 - g 70 -5.4 -4.37991 | CAAAAAGACTCAAAA GCAA TAG TTGC TGCATGGGCTCCTGA M28_Spy0253 275479 - 276597 + | GTP-binding protein YqeH TERM 332 276639 - 276624 - g 78 -2.6 -5.43866 | GAAGTTGGAAAAAAA TGCTTA CAAG TAAACA AAGAGCTTTCTTAAA M28_Spy0254 276575 - 276931 + | RNA-binding protein nadD 277000 - 277632 + | nicotinic acid mononucleotide adenylyltransferase TERM 333 278095 - 278083 - g 70 -3.3 -4.86001 | opp_overlap 278083 ATGACGCTAGAAAAA TCGCG AAG CTCGA TTTGAATCAGGCTGT M28_Spy0256 277629 - 278222 + | HAD family hydrolase TERM 334 278495 - 278510 + G 82 -4 -5.41143 | TTGCTTGATTTGACC GATGTG GTGG TACATC TTTTTTTAGAAGATG M28_Spy0257 278198 - 278599 + | iojap superfamily protein TERM 335 278613 - 278631 + G 79 -6.7 -4.60487 | opp_overlap 278611 278613 AATGTTACAAAGAGA CCTTGTC AATAC GACAGGG TTTTTGAGGATGATA TERM 336 279356 - 279369 + G 80 -4.5 -5.26918 | opp_overlap 279356 AGGAGCCAACTAAGA CCAGC AAGC GTTGG TTTTTTGTAGCATAT M28_Spy0258 278599 - 279390 + | methyltransferase TERM 337 280056 - 280044 - g 76 -3.4 -5.28176 | GCTATCCACAAAAAA CACA AAAAA TGTG GGAAATCTTTGCTGG M28_Spy0259 279644 - 280750 + | hypothetical protein TERM 338 280745 - 280735 - f 84 -5.4 -5.58179 | opp_overlap 280742 TATTATAATAAAAAA TGAG AGG CTCA ATTAAACTCTAATTG TERM 339 280742 - 280762 + F 93 -7 -5.75945 | opp_overlap 280735 ATAAAAAATGAGAGG CTCAATTA AACTC TAATTGAG TTTTTTTTGGGGGCT M28_Spy0260 281088 - 281243 + | hypothetical protein M28_Spy0261 281233 - 281949 + | hypothetical protein TERM 340 281971 - 281992 + F 86 -8.1 -4.68994 | opp_overlap 281971 ATAGAATAATAAAAA GAGTTGAAA ACTA TTTCAGCTC TTTTTAAGTGATGCT TERM 341 281992 - 281971 - f 84 -5.9 -5.35721 | opp_overlap 281971 ATAGAATAATAAAAA GAGTTGAAA ACTA TTTCAGCTC TTTTTAAGTGATGCT TERM 342 282191 - 282177 - g 75 -10 -3.23296 | AACAATATTTAGGAA GGGCAA CAA TTGCCC TAGCATCAACCCTTG M28_Spy0262 282152 - 282994 + | ABC transporter substrate-binding protein TERM 343 283428 - 283410 - g 82 -6 -4.9934 | ACAAGATGATAAAAA CACTCTAA CTA TTGGAGTG ATGACAAAAACAGAA TERM 344 283718 - 283708 - g 70 -5.4 -4.3453 | overlap 283704 AAGGCTAAATACAAA TCAG TAG CTGA TCTGCCAAATGGTGC M28_Spy0263 283321 - 284166 + | ABC transporter substrate-binding protein M28_Spy0264 284416 - 285480 + | ABC transporter ATP-binding protein M28_Spy0265 285481 - 286173 + | ABC transporter permease protein TERM 345 286212 - 286175 - T 100 -10.2 -4.57482 | gap 2, opp_overlap 286180 286183, overlap 286180 TTAGTCATAAATAAA CGAAACAACACCCTAAGT TTTT ACTTAGGGTGTTGTT--G TTTAGATGATGTCAT TERM 346 286180 - 286209 + T 100 -18.1 -3.98075 | opp_overlap 286180 286175, overlap 286183 CATAAATAAACGAAA CAACACCCTAAGT TTTT ACTTAGGGTGTTG TTGTTTAGATGATGT TERM 347 286209 - 286180 - T 100 -18.1 -4.29621 | opp_overlap 286180 286183, overlap 286175 CATAAATAAACGAAA CAACACCCTAAGT TTTT ACTTAGGGTGTTG TTGTTTAGATGATGT TERM 348 286183 - 286206 + T 100 -14 -4.10744 | opp_overlap 286180 286175, overlap 286180 AAATAAACGAAACAA CACCCTAAGT TTTT ACTTAGGGTG TTGTTGTTTAGATGA braB 287597 - 286227 - | branched-chain amino acid transport system carrier protein M28_Spy0267 287831 - 289045 + | serine/threonine transporter SstT TERM 349 289091 - 289068 - T 100 -11.1 -5.27399 | opp_overlap 289068 TAACATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTATTATTTA TERM 350 289068 - 289091 + T 100 -11.1 -6.01369 | opp_overlap 289068 TAACATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTATTATTTA M28_Spy0268 289774 - 289100 - | potassium uptake protein KtrA M28_Spy0269 291175 - 289784 - | potassium uptake protein KtrB TERM 351 291231 - 291214 - R 82 -5.6 -5.23016 | opp_overlap 291213 291214 AAATAAGTTAAAAAA GCTAAG TTTCAT CTTAGC CTTTGGTACTATTTT gidB 291958 - 291245 - | glucose-inhibited division protein B TERM 352 291603 - 291591 - G 83 -3.4 -5.55664 | CTACCATGAAAAAAA TGGA CATTT TCCA AGCCCAATTCCTGAG TERM 353 291802 - 291815 + g 84 -6.7 -4.85918 | AATCATAAAAATGCT TGAGG TAAA CCTCA TTTTCTTCTGTAATA TERM 354 292474 - 292455 - g 74 -6.5 -4.48175 | AAAAGCTAACGAAAA CTTCTTG AAATTA CAAGAAG AGTTGACCAATACGG lemA 292108 - 292665 + | hypothetical protein TERM 355 292742 - 292754 + G 70 -3.4 -4.85618 | opp_overlap 292742 ATTTCACAAAATAAG CAAC GAACA GTTG TTTTATTAGTTGTTT TERM 356 293083 - 293068 - g 83 -9 -4.09864 | opp_overlap 293069 293070, overlap 293069 ATCTAGCCCTCAAAA TGCTGC TGTT GCAGCA ACGACAGGTTTACTT M28_Spy0272 292712 - 293608 + | heat shock protein HtpX TERM 357 293605 - 293636 + F 86 -6 -5.51046 | gap 1, opp_overlap 293605 AAGGCTAAAAAACAT GTGAGCGTTTGGG GTTTTTG CTCAAAC-CTCAC TTTTTTATGTCTTTG TERM 358 294347 - 294324 - g 83 -6.1 -5.093 | opp_overlap 294324 294341 TCTAAAAGAAGAAAA GCAAAAAGA AAATAA TCCTTTTGC TAGCTTGCAAGGGTT M28_Spy0273 293839 - 294375 + | putative cytoplasmic protein TERM 359 294692 - 294677 - g 74 -6.2 -4.43681 | opp_overlap 294677 294676 294672 TATTGAAGATGAAAA GAATCT GGCT AGATTC GTTTCTCTTGAGCTG covR 294642 - 295328 + | response regulator TERM 360 295515 - 295545 + G 82 -8.4 -4.27316 | AAGCTGTAAATATTG TTAGAGTTCGTCTT TCT GAGGTGGACTCTAA TTTTACATTAGAGAA covS 295334 - 296836 + | CsrS M28_Spy0276 297051 - 297545 + | transcriptional regulator NrdR dnaB 297529 - 298704 + | replicative DNA helicase TERM 361 299314 - 299298 - g 70 -2.9 -5.09895 | opp_overlap 299299, overlap 299299 CATTGATGTAAAAAA TGCCATT TCA AACGGCT CTGTTAAAGAAGAAA dnaI 298705 - 299607 + | primosomal protein DnaI engA 299670 - 300980 + | GTP-binding protein EngA TERM 362 301034 - 301066 + F 95 -8.5 -4.92783 | opp_overlap 301034 TCTCATCATTGATAA GGACTGTGTTGTGTA TGT TACAGGAGACAGTCC TTTTTATAATACCTT snf 301187 - 304285 + | phage-related DNA helicase M28_Spy0281 304528 - 305130 + | putative cytoplasmic protein murC 305170 - 306498 + | UDP-N-acetylmuramate--L-alanine ligase TERM 363 306504 - 306518 + F 100 -11.4 -4.58466 | opp_overlap 306502 TAACCAATAACATGT CCTGCC TTA GGCAGG TTTTCTCATTCTAAA M28_Spy0283 306544 - 307026 + | acetyltransferase TERM 364 308049 - 308032 - g 76 -3.5 -5.32699 | opp_overlap 308041 GGAAAGACCAAAAAA GCTAAAA CACC TTTTAAC GAGAAGGATTTTTTG TERM 365 308680 - 308657 - g 81 -6.8 -4.68593 | opp_overlap 308659 TTTACTATGCAAAAA CATTTGAAGA ACAC TCTGCAAATG TTGAAAAATATGTGA M28_Spy0284 307138 - 308712 + | aminodeoxychorismate lyase TERM 366 308706 - 308752 + F 100 -23.5 -3.33696 | gap 1, opp_overlap 308706 308714 308720, overlap 308714 308720 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 367 308752 - 308706 - f 100 -23.5 -2.85503 | gap 1, opp_overlap 308706 308714 308720, overlap 308714 308720 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 368 308745 - 308714 - f 100 -20.4 -3.82097 | opp_overlap 308706 308714 308720, overlap 308706 308720 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 369 308714 - 308745 + F 100 -20.4 -4.10331 | opp_overlap 308714 308706 308720, overlap 308706 308720 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 370 308739 - 308720 - f 100 -12.2 -4.36903 | opp_overlap 308714 308706 308720, overlap 308714 308706 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT TERM 371 308720 - 308739 + F 100 -12.2 -4.42513 | opp_overlap 308720 308714 308706, overlap 308714 308706 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT greA 308737 - 309267 + | transcription elongation factor GreA TERM 372 309466 - 309443 - T 71 -3.1 -5.10163 | overlap 309446 AATGCCAAAAGAAAA GACCAGCAC CTTAAT GTACTGACC CCAAAAAGTTGGACA TERM 373 309783 - 309830 + T 100 -15.8 -5.38951 | overlap 309784 ATCGTTAGATTTTTT TGATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATCG TTTTTTGTCTAACTT TERM 374 309784 - 309829 + T 100 -17.1 -3.81744 | overlap 309783 TCGTTAGATTTTTTT GATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATC GTTTTTTGTCTAACT M28_Spy0286 310810 - 309887 - | OxaA-like protein precursor M28_Spy0287 311203 - 310892 - | acylphosphatase M28_Spy0288 311431 - 312168 + | 23S rRNA methyltransferase M28_Spy0289 312207 - 312707 + | HAD superfamily hydrolase M28_Spy0290 312722 - 313411 + | integral membrane protein TERM 375 313453 - 313405 - f 100 -18.8 -4.1552 | gap 1, opp_overlap 313414 313421, overlap 313408 313421 TATTTTTGGAAGAAA TGATTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA-CA GGATAAGTAAACTGT TERM 376 313451 - 313408 - f 100 -21.6 -3.10244 | opp_overlap 313414 313421, overlap 313405 313421 TTTTGGAAGAAATGA TTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA CAGGATAAGTAAACT TERM 377 313414 - 313445 + F 95 -14.8 -3.02511 | opp_overlap 313408 313405 313421, overlap 313421 AAGAAATGATTAACA TTAAAAAGTGAGTA TAAC TACTCACTTTTTAA TGTTAACAGGATAAG TERM 378 313438 - 313421 - f 95 -8.5 -4.89233 | opp_overlap 313414 313421, overlap 313408 313405 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA TERM 379 313421 - 313438 + F 95 -8.5 -4.87626 | opp_overlap 313421 313408 313405, overlap 313414 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA M28_Spy0291 313589 - 313831 + | hypothetical protein TERM 380 313953 - 313976 + F 100 -11.1 -4.82667 | opp_overlap 313953 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA TERM 381 313976 - 313953 - f 100 -11.1 -4.85782 | opp_overlap 313953 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA glr 314009 - 314803 + | glutamate racemase M28_Spy0293 314800 - 315786 + | fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein M28_Spy0294 315765 - 316286 + | putative phosphoesterase M28_Spy0295 316283 - 316744 + | CBS domain-containing protein TERM 382 317081 - 317066 - g 72 -3.2 -5.14563 | TTTTCTATCAAAAAA CCCC TTTTGTGT GGGG GCAATTAATCAGCTT xerD 316741 - 317487 + | site-specific tyrosine recombinase XerD-like protein scpA 317487 - 318191 + | segregation and condensation protein A scpB 318188 - 318739 + | segregation and condensation protein B M28_Spy0299 318837 - 319583 + | ribosomal large subunit pseudouridine synthase B M28_Spy0300 319580 - 319843 + | hypothetical protein M28_Spy0301 319985 - 320569 + | 23S rRNA methyltransferase TERM 383 320632 - 320574 - f 76 -9.9 -2.77539 | gap 1, opp_overlap 320575 320584, overlap 320584 AACTAAAATAATGGA CTTTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAAA- TTTAGTCAAAGCTAT TERM 384 320575 - 320632 + F 100 -22.5 -3.73402 | opp_overlap 320574 320584, overlap 320584 ACTAAAATAATGGAC TTTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAAA TTTAGTCAAAGCTAT TERM 385 320623 - 320584 - f 78 -7.8 -4.09864 | opp_overlap 320575 320584, overlap 320574 ATGGACTTTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 386 320584 - 320623 + F 100 -14.4 -4.17491 | opp_overlap 320584 320574, overlap 320575 ATGGACTTTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 387 320846 - 320873 + F 89 -7.2 -5.21709 | CAATAACGACGGAAC TTCTTTCAATTT GAAA AAATTGGAGGAA TTTTTTAATGTCAAA M28_Spy0302 320881 - 321444 + | riboflavin transporter TERM 388 321727 - 321742 + G 70 -3.2 -4.86621 | opp_overlap 321727 GTTTATCTTGTCAAA TGGTGC CATT GCAGCA TTTTTGATTACGACT M28_Spy0303 321446 - 322099 + | phosphatidylglycerophosphatase B-like protein TERM 389 322135 - 322185 + F 81 -7.9 -4.43879 | opp_overlap 322141, overlap 322136 322141 GCTTATTTAAATCAT TTAGAATAACATTGGCAAGCA TCACCCCCT TGATTGCCAGTGTTATTTTAG TTTTAGTTAGATGAT TERM 390 322136 - 322184 + F 77 -9.2 -3.25604 | opp_overlap 322141, overlap 322135 322141 CTTATTTAAATCATT TAGAATAACATTGGCAAGCA TCACCCCCT TGATTGCCAGTGTTATTTTA GTTTTAGTTAGATGA TERM 391 322141 - 322179 + F 83 -6.9 -4.72729 | opp_overlap 322141, overlap 322136 322135 TTAAATCATTTAGAA TAACATTGGCAAGCA TCACCCCCT TGATTGCCAGTGTTA TTTTAGTTTTAGTTA M28_Spy0304 322374 - 323312 + | Fe-S oxidoreductase TERM 392 323454 - 323480 + G 76 -7.4 -4.22407 | ATGGAAATGATACTG CCTTTTTGGC ACAATTA GCTAAAAAGG TTTATGCTTTTGATG TERM 393 323854 - 323868 + G 75 -2.8 -5.2112 | opp_overlap 323854 TCAGCCTCTTAATCA GGTG AATACCC CACC TTTTTTAATCATGTT M28_Spy0305 323324 - 323905 + | SAM-dependent methyltransferase hlyX 323999 - 325372 + | putative hemolysin TERM 394 325387 - 325367 - f 87 -11.2 -3.1994 | opp_overlap 325367 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT TERM 395 325367 - 325387 + F 100 -11.2 -4.7254 | opp_overlap 325367 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT TERM 396 325431 - 325416 - g 71 -4.8 -4.48987 | GTGTTATAATGAAAA TGTAAA AACG TTTACA AGTAATGAAGGAGAT TERM 397 326197 - 326187 - g 75 -5.4 -4.7416 | TCAAAATGCTAAAAA TCTG ATG CAGA CCGAATCTTACACAG pflC 325378 - 326241 + | pyruvate formate-lyase activating enzyme TERM 398 326255 - 326271 + F 100 -10.9 -4.67556 | AAGAGCTGTTATAGG GTTGAGG TTT CCTCAAC TTTTTAAAGTATTAT TERM 399 326782 - 326767 - g 74 -4.7 -4.87803 | TATGTTTAAAGAAAA TGGCA TCGAGG TGCCA AAAGCGATTGCAGGG ppaC 326366 - 327307 + | putative manganese-dependent inorganic pyrophosphatase TERM 400 327350 - 327326 - f 71 -6.5 -4.11773 | opp_overlap 327326 327340 AAAGACGCTTTAAAA GGACTTGAT TTTTTTG ACCAAGTCC TTTTGTCACTCTTCT M28_Spy0309 327353 - 328036 + | putative cytoplasmic protein TERM 401 328043 - 328067 + T 100 -9.4 -4.7329 | opp_overlap 328043 GCACCATAGAAAAAA GCTAGGAACA AGGAC TGTTCTTAGC TTTTTGAGTGCTTTT TERM 402 328067 - 328043 - T 93 -7.9 -5.39721 | opp_overlap 328043 GCACCATAGAAAAAA GCTAGGAACAA GGA CTGTTCTTAGC TTTTTGAGTGCTTTT fhuG 329118 - 328081 - | ferrichrome transport system permease protein fhuB 330131 - 329079 - | ferrichrome transport system permease protein TERM 403 329144 - 329155 + gr 70 -7.2 -3.72695 | opp_overlap 329143 TTAAGCTAACCAATG CCCC AAGA GGGG TTTCATAAGGCGGAT TERM 404 329316 - 329306 - GR 75 -5.4 -4.77775 | AGCCGATAAAAGAAA TGCT TCC AGCA ATGGCTACAGCTGCT fhuD 331053 - 330121 - | ferrichrome-binding protein TERM 405 330758 - 330771 + g 76 -2.4 -5.46629 | opp_overlap 330752, overlap 330752 330755 TCTAAATCAGTTGCA GCAA CTTGCT TTGC TTTTTTTACAGTCTT fhuA 331861 - 331079 - | ferrichrome transport ATP-binding protein TERM 406 331805 - 331793 - G 80 -6.3 -4.70583 | TTCAGGAATATAAAA CGATA ATT TATCG ATGATGGTACGCTGT TERM 407 332007 - 331994 - R 87 -6.7 -5.40625 | opp_overlap 331994, overlap 331987 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 408 331994 - 332007 + r 85 -6.7 -5.2422 | opp_overlap 331994 331987 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 409 332096 - 332046 - R 73 -3.7 -5.0917 | overlap 332048 GTATTAAAAAAGAAA TATTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAACG TCAACATACTCTAGA TERM 410 332094 - 332048 - R 85 -8.5 -4.15047 | overlap 332046 ATTAAAAAAGAAATA TTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAA CGTCAACATACTCTA murE 333552 - 332107 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 411 334650 - 334677 + G 70 -2.8 -5.06816 | opp_overlap 334656 AGCTGCTCGCTTAAT CATTAACAACAT TGAA ATGTTAGTAATG TTTTTGTTACCCGCT M28_Spy0315 333640 - 335274 + | polysaccharides and teichoic acids export protein TERM 412 335292 - 335318 + F 91 -5.3 -5.84381 | gap 1, opp_overlap 335292 TAATGACACCAAGAA CGATTTCG-TGA GTGC TTATCGAAATCG TTTTTTTCTTAATGA upp 335442 - 336071 + | uracil phosphoribosyltransferase clpP 336295 - 336885 + | ATP-dependent Clp protease proteolytic subunit TERM 413 336897 - 336932 + F 74 -9.2 -3.01712 | opp_overlap 336903 336906, overlap 336903 ATAAAGAGGATATCT GCAAAAGTATTCTAGA AATT TCTAGGATGCTTTTTC TCTTAGAAAGGAAAA TERM 414 336903 - 336926 + F 84 -6.8 -5.0916 | opp_overlap 336903 336906, overlap 336897 AGGATATCTGCAAAA GTATTCTAGA AATT TCTAGGATGC TTTTTCTCTTAGAAA M28_Spy0318 337380 - 337655 + | hypothetical protein TERM 415 337661 - 337649 - f 81 -7.7 -4.40037 | AAACAACCATCAAAA GGGTT AAC AACCC CCTAGTTACTGATTA TERM 416 337828 - 337850 + F 70 -4.2 -4.7329 | gap 1, opp_overlap 337828, overlap 337847 TGGTCCTAAAATAGA GCACTG-CA AAGATA TGCCAGTGC TTTTTAGCTCATTTT tdk 337904 - 338539 + | thymidylate kinase dnaX 338557 - 339432 + | DNA polymerase III subunit delta' M28_Spy0321 339619 - 339780 + | signal peptidase-like protein TERM 417 340143 - 340123 - g 81 -6.9 -4.67011 | opp_overlap 340123 AACGGTAGCTAAAAA TCCTTCC AAACAAA GGAAGGA TCACTTAGAGGGAAT M28_Spy0322 339935 - 340258 + | DNA replication intiation control protein YabA TERM 418 340310 - 340297 - g 86 -2.4 -5.88197 | opp_overlap 340297, overlap 340301 340302 TTAAAGACAAAAAAA CAAG CGGAAC CTTG TATTTGGTTCCAACC TERM 419 340940 - 340924 - g 70 -7.9 -3.73775 | opp_overlap 340924, overlap 340926 CCTACCTTGAGGAAA CACCCCT CAA AGGGGAG TGTCTGCTGATTGTG TERM 420 340938 - 340926 - g 74 -9.1 -3.45324 | opp_overlap 340924, overlap 340924 TACCTTGAGGAAACA CCCCT CAA AGGGG AGTGTCTGCTGATTG M28_Spy0323 340263 - 341126 + | corrin/porphyrin methyltransferase M28_Spy0324 341153 - 341545 + | hypothetical protein TERM 421 341581 - 341555 - T 100 -9.6 -5.50925 | opp_overlap 341555 AACTAAGAGAAAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA TERM 422 341555 - 341581 + T 100 -9.6 -4.323 | opp_overlap 341555 AACTAAGAGAAAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA cutC 342221 - 341592 - | copper homeostasis protein TERM 423 342036 - 342025 - G 73 -5.8 -4.60797 | TCGTTATAGACAAAA TCGC CACC GCGA GGTCGAATCATGGTC TERM 424 342494 - 342478 - H 80 -6.5 -4.7871 | overlap 342480 AATGATGACCAAAAA CAGGCGC CTC ACGCCTA AAACAGTTACCCTAA TERM 425 342492 - 342480 - H 73 -6.9 -4.00443 | overlap 342478 TGATGACCAAAAACA GGCGC CTC ACGCC TAAAACAGTTACCCT M28_Spy0326 342520 - 342876 + | arsenate reductase family protein TERM 426 342882 - 342939 + T 100 -11.7 -4.62471 | gap 1, opp_overlap 342877 342897, overlap 342886 342897 TTTAGGATAATGCGA CAAAGTCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGA-TCTG TTTTTAGACATTAGA TERM 427 342886 - 342937 + T 100 -13.4 -3.92577 | gap 1, opp_overlap 342877 342897, overlap 342882 342897 GGATAATGCGACAAA G-TCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGATC TGTTTTTAGACATTA TERM 428 342925 - 342897 - T 100 -10.3 -5.07107 | opp_overlap 342886 342882 342897 CAAAGTCTCAAAAAA GGACAAGGCAACA TTA TAACGCCTTGTCC TTTTTTGGGATCTGT TERM 429 342897 - 342925 + T 88 -7.5 -5.08169 | opp_overlap 342897, overlap 342886 342882 CAAAGTCTCAAAAAA GGACAAGGC AACATTATAAC GCCTTGTCC TTTTTTGGGATCTGT exoA 343861 - 342950 - | exodeoxyribonuclease III TERM 430 344035 - 344024 - g 73 -2.2 -5.27923 | CAATGGCACAAAAAA CAGT CATC ACCG AAGAAACAACCGATT lctO 344005 - 345192 + | L-lactate oxidase TERM 431 345234 - 345205 - f 77 -5.1 -5.12474 | gap 1, opp_overlap 345205 TAGAACAGACAAAAA CCTCTGCTATCATG TCA CA-AATAGTAGAGG TTTTACACTGCAAAA prtS 345458 - 350395 + | lactocepin TERM 432 350395 - 350381 - f 83 -5 -5.44119 | TTTAGCCGAAAAAAA TCAACC AAA GATTGA TAACAAAACGCAAAG TERM 433 350523 - 350561 + F 100 -20.6 -3.87505 | opp_overlap 350523 350525 350533, overlap 350525 350533 AGGAACAGACATAAA GACCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 434 350561 - 350523 - f 100 -20.6 -4.21945 | opp_overlap 350523 350525 350533, overlap 350525 350533 AGGAACAGACATAAA GACCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 435 350525 - 350559 + F 100 -23.2 -3.51879 | opp_overlap 350523 350525 350533, overlap 350523 350533 GAACAGACATAAAGA CCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGG TGTTATTGTCGTGTG TERM 436 350559 - 350525 - f 100 -23.2 -3.6979 | opp_overlap 350525 350523 350533, overlap 350523 350533 GAACAGACATAAAGA CCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGG TGTTATTGTCGTGTG TERM 437 350533 - 350551 + F 100 -13.2 -4.57533 | opp_overlap 350525 350523 350533, overlap 350525 350523 ATAAAGACCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 438 350551 - 350533 - f 100 -13.2 -4.59207 | opp_overlap 350533 350525 350523, overlap 350525 350523 ATAAAGACCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 439 351050 - 351022 - g 70 -5.9 -4.41633 | TAGGCTCAAAAATAA GGCATAGAATTCC AAA GGAAGTCGCTGCC GTGAGCACAACCTAA M28_Spy0330 350886 - 351065 + | hypothetical protein TERM 440 351104 - 351118 + F 100 -7.2 -5.86976 | opp_overlap 351104, overlap 351099 TTCTGCAATTTGAAA TACTGA ATT TCAGTA TTTTTTCTTTTGTAA M28_Spy0331 351168 - 351875 + | permease TERM 441 351905 - 351924 + F 81 -10.8 -2.64134 | overlap 351902 351901 AAGAAAGTTCATTTA GGGTAAGT TTTT ACTTACCC TCCGTTGATTTGCTG metG 352115 - 354115 + | methionyl-tRNA synthetase TERM 442 354160 - 354137 - f 80 -6.8 -4.68593 | opp_overlap 354137 CCTATTATTCAAAAA CCTAAGCA AGAATATG TGCTTAGG TTTTTTGATTGCCTT TERM 443 354137 - 354160 + F 85 -6.8 -5.29385 | opp_overlap 354137 CCTATTATTCAAAAA CCTAAGCA AGAATATG TGCTTAGG TTTTTTGATTGCCTT TERM 444 354366 - 354351 - f 72 -6.2 -4.37092 | opp_overlap 354351 ATGGTTTTTATAAAA GTTAAG CGTG CTTAAC TTTAGCCAAACAAAA TERM 445 354401 - 354384 - f 73 -7 -4.07285 | overlap 354382 TAGCCAAACAAAAGA GGACAC TAGAGC GTGTCC CACAAGACAGTTGAG M28_Spy0333 354478 - 354609 + | hypothetical protein nrdF 354606 - 355619 + | ribonucleotide-diphosphate reductase subunit beta nrdI 355623 - 356111 + | ribonucleotide reductase stimulatory protein nrdE.1 356078 - 358258 + | ribonucleotide-diphosphate reductase subunit alpha TERM 446 358323 - 358350 + T 100 -10 -5.47399 | opp_overlap 358325 358328 CACTCGACCTTTCAA GACAAGCAAG CATCAGCT CTTGCTTGTC TTTTTTTGGCCTTAA TERM 447 358436 - 358424 - T 91 -4.8 -5.81032 | opp_overlap 358424 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTGGTGATCGG TERM 448 358424 - 358436 + T 77 -4.8 -5.1861 | opp_overlap 358424 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTGGTGATCGG TERM 449 358485 - 358499 + T 82 -3.5 -5.6473 | CTGCCCTTGAAATAC GCTTC TATGT GGAGC TTTTTTTGGTCTTGT spyA 359230 - 358463 - | C3 family ADP-ribosyltransferase TERM 450 358804 - 358772 - G 70 -9.2 -3.14602 | overlap 358770 GTTACGGTAGTAAGA CGTGAGATCAGCGT GTGAA ACACCGATATCACG CAAAAACGTCTCGTA TERM 451 359437 - 359451 + H 73 -7.8 -3.8647 | opp_overlap 359436 359437, overlap 359438 AGAGGCAGACAAGAG TGGCAG TAC CTGCCG TTTGCTGTGGTGGCT TERM 452 359438 - 359450 + H 73 -9.1 -2.914 | opp_overlap 359437 359436, overlap 359437 GAGGCAGACAAGAGT GGCAG TAC CTGCC GTTTGCTGTGGTGGC M28_Spy0338 359654 - 360124 + | hypothetical protein TERM 453 360253 - 360275 + T 100 -15.6 -5.2696 | TCCCTTTAGTAGTCA GGCCACCTCT GAT AGGGGTGGCC TTTTTTGGGTTTTAG TERM 454 360441 - 360463 + T 100 -12.8 -4.90381 | opp_overlap 360439 360436 TATAGCTAAACACGT GAGGAGACGA GAC TCGTCTTCTC TTTTGTTATGTTCAA M28_Spy0339 360676 - 360431 - | transposase M28_Spy0340 361423 - 360965 - | transposase TERM 455 361195 - 361184 - G 71 -7.2 -3.92075 | opp_overlap 361184 361183 ATCTTGAGCGATAAA GGCG AGTT CGCC CTTTTGATAGGAAAA TERM 456 361444 - 361454 + H 77 -5.4 -5.0133 | GACAGGATTTGCATT GAGA TCT TCTC TTTTTTAAACGAATG M28_Spy0341 362103 - 362612 + | hypothetical protein TERM 457 362801 - 362821 + F 100 -13.3 -5.2696 | CCCTTTAGTAGTCAG GCCACCTCT GAT AGGGGTGGC TTTTTTGGGTTTTAG M28_Spy0342 362817 - 363116 + | hypothetical protein TERM 458 363170 - 363155 - T 83 -6.8 -4.93296 | opp_overlap 363155 TCAGCAGCACAAAAA GCACCC TTAC AGGTGC TTAGATTGAAAAAGG TERM 459 363283 - 363308 + T 71 -7.6 -3.57144 | opp_overlap 363279 363278, overlap 363280 TCTCAAAAATCCCGA GTGGCGTC CTCTCGTATT GACGCCAC TTTCACCATGACAAA TERM 460 363378 - 363388 + T 71 -6.8 -4.2687 | AACCGTATGTCACAT CAGC AGA GCTG TTTATGCTTTTTGAA TERM 461 363432 - 363447 + T 84 -6.8 -5.04325 | TTGTCTAGGTTCTAA GCACCT GTAA GGGTGC TTTTTGTACTTTAGC M28_Spy0343 363989 - 363489 - | hypothetical protein M28_Spy0344 364066 - 364191 + | hypothetical protein speJ 364955 - 364257 - | exotoxin type J precursor TERM 462 365230 - 365208 - H 70 -7.1 -3.7278 | gap 1, overlap 365206 GGACAAAATCAAAGA GC-TTACCAG TTTT CTGGTAATGC TGATCATGTCTCCTT M28_Spy0346 365982 - 366563 + | hypothetical protein TERM 463 366715 - 366660 - f 100 -23.8 -3.31248 | gap 1, opp_overlap 366669 366675 TAATATTGTTTAGAA CAGACTGAAGACAAAGCTCTTAGTAAC TAA ATT-CTAAGGGCTTTGTCTTCAGTCTG AGGCACCTTACGGGG TERM 464 366669 - 366706 + F 85 -12.2 -3.12351 | opp_overlap 366660, overlap 366675 TTAGAACAGACTGAA GACAAAGCTCTTAGTA ACTAAA TTCTAAGGGCTTTGTC TTCAGTCTGAGGCAC TERM 465 366717 - 366734 + F 77 -5.5 -5.011 | TTGTCTTCAGTCTGA GGCACCT TACG GGGTGTC TTTTATTATTTAGGT M28_Spy0347 367178 - 367459 + | hypothetical protein fabG 367452 - 368150 + | 3-ketoacyl-(acyl-carrier-protein) reductase M28_Spy0349 368193 - 369185 + | NAD-dependent oxidoreductase TERM 466 369248 - 369271 + F 90 -8.1 -5.14965 | opp_overlap 369241, overlap 369249 TTGAAAGACGTGTTT TCACGAGGG TTAACC CCCTCGTGC TTTTTTGGTAAAAAT TERM 467 369249 - 369270 + F 90 -11.6 -3.68256 | opp_overlap 369241, overlap 369248 TGAAAGACGTGTTTT CACGAGGG TTAACC CCCTCGTG CTTTTTTGGTAAAAA M28_Spy0350 369512 - 370855 + | phosphoglycerate transporter protein TERM 468 371120 - 371133 + G 81 -6.7 -4.79223 | opp_overlap 371119 AGTATCTGGACTAAC CATGC TTGA GCATG TTTTTCGTAGTGTAA TERM 469 372116 - 372100 - g 70 -2.9 -5.02476 | ACATTGGTGAAAAAA CAAAGGC TGG GCATCTG ACTTATATTGGAAAC gcaD 371028 - 372410 + | UDP-N-acetylglucosamine pyrophosphorylase M28_Spy0352 372441 - 372995 + | phosphohydrolase M28_Spy0353 372992 - 373246 + | hypothetical protein pfs 373266 - 373961 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase M28_Spy0355 374112 - 374453 + | hypothetical protein TERM 470 374530 - 374493 - T 100 -24.5 -5.40474 | opp_overlap 374493, overlap 374479 AGCCCCTCAAAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTGAGGAGACGC TERM 471 374493 - 374530 + T 100 -24.5 -4.56597 | opp_overlap 374479 374493 AGCCCCTCAAAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTGAGGAGACGC scaR 375199 - 374552 - | iron-dependent repressor TERM 472 374983 - 374957 - G 71 -3.7 -4.8622 | CTGGTGAATCAAAAA TACCTCAATCA AGCGG TGTTTGCGGTA GAGGTTAGCAACAAG TERM 473 375695 - 375682 - g 83 -5.3 -5.25735 | opp_overlap 375694 TCAAAAAACGAAAAA CAAAG ATTA CTTTG CCGTGTCTGATGGCA mtsA 375341 - 376276 + | manganese-binding protein TERM 474 376285 - 376315 + F 83 -6.2 -5.05113 | AAAATAAGATAACAA TAAAGCACAGCGAT TTT AGTGTTGTGCTTTG TTTTATTTATGTAAA mtsB 376313 - 377065 + | manganese transport system ATP-binding protein mtsC 377066 - 377920 + | manganese transport system membrane protein TERM 475 377968 - 377979 + T 74 -2.2 -5.43414 | AATAGTGGCAAATAA CATC AAAG GGTG TTTTTTATATGTCAT M28_Spy0360 378873 - 378067 - | peptidyl-prolyl cis-trans isomerase ftsK 379090 - 381495 + | cell division protein TERM 476 381535 - 381493 - T 100 -18 -3.02698 | opp_overlap 381498, overlap 381498 GTATTGCAGACAAAC TAAAAGAACCTGACGTCTCA TGA TGAGATGTCAGGTTCTTTTT TTGTGATGTCAAGCC TERM 477 381498 - 381530 + T 100 -20.1 -5.69473 | opp_overlap 381493 381498 GCAGACAAACTAAAA GAACCTGACGTCTCA TGA TGAGATGTCAGGTTC TTTTTTTGTGATGTC TERM 478 381530 - 381498 - T 100 -17.9 -4.65153 | opp_overlap 381498, overlap 381493 GCAGACAAACTAAAA GAACCTGACGTCTCA TGA TGAGATGTCAGGTTC TTTTTTTGTGATGTC M28_Spy0362 381918 - 381565 - | integral membrane protein TERM 479 382417 - 382376 - g 71 -6.5 -4.30844 | overlap 382379 ATTTCATCACTAAAA CACCACCAGCTGCTGTTCT TTTG AAAAAAGCTGCAGGTGTTG AAAAAGGATCAGGTA rplK 382162 - 382587 + | 50S ribosomal protein L11 TERM 480 382729 - 382711 - g 71 -5.3 -4.5187 | GCTAAAAAAAGCAAA CAAATGC GTGCT GCACTTG AAAAAGTAGATAGCA rplA 382693 - 383382 + | 50S ribosomal protein L1 TERM 481 383406 - 383391 - f 89 -3.3 -5.80364 | ACTTTAAGAAAAAAA TTAGG GCATCG CCTAA TCATAGCAAAAAGAC TERM 482 383433 - 383457 + F 86 -5.8 -5.42265 | AGACAAATTTCTGAA GACAAATCTT CACTA GAGGTTTGTC TTTTTTATGGTTTAA pyrH 383704 - 384432 + | uridylate kinase frr 384461 - 385018 + | ribosome recycling factor M28_Spy0367 385127 - 385984 + | S1 RNA-binding domain-containing protein TERM 483 386008 - 385988 - f 70 -3.9 -4.98436 | opp_overlap 385990, overlap 385989 385990 TTAATAGGATAAAAA TGCTTTGCC ACT GGCAAAGTT TTTTGTTACAATGAA TERM 484 386007 - 385989 - f 71 -7.4 -3.57977 | opp_overlap 385990, overlap 385988 385990 TAATAGGATAAAAAT GCTTTGCC ACT GGCAAAGT TTTTTGTTACAATGA TERM 485 385990 - 386006 + F 100 -10.9 -5.46657 | opp_overlap 385989 385988 385990 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 486 386006 - 385990 - f 81 -10.9 -2.73702 | opp_overlap 385990, overlap 385989 385988 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 487 386386 - 386376 - g 81 -5.4 -5.0707 | AAAGACAAAAAGAAA TTGC AGA GCAA TCAAAAGCAAACTTG msrA.2 386057 - 386566 + | methionine sulfoxide reductase A M28_Spy0369 386557 - 386814 + | hypothetical protein TERM 488 386808 - 386794 - f 74 -6.4 -4.31433 | opp_overlap 386794 386806 TACGTGGATAAGAAA GAGTCA TAT CGACTC TTTTGAAGGGTTATC TERM 489 387664 - 387654 - g 70 -3.2 -4.91109 | overlap 387616 GCTCCAGCAGAAAAA GAAG AAA CCTC TCAGATGTTAACTGC M28_Spy0370 386934 - 388115 + | surface antigen TERM 490 388151 - 388134 - f 93 -7 -5.52986 | opp_overlap 388123 388134 ATGCTATCAAAAAAA CTCACG TTTAGG CGTGAG TTTTTTGACAATTCT TERM 491 388134 - 388151 + F 88 -7.7 -5.06103 | opp_overlap 388134, overlap 388123 ATGCTATCAAAAAAA CTCACGT TTAG GCGTGAG TTTTTTGACAATTCT TERM 492 388932 - 388944 + G 74 -6.3 -4.42806 | opp_overlap 388928 388923 AAACCATTGAAGAGT TCTTC TCA GAAGA TTTCTTTAAGAGTAA TERM 493 390167 - 390153 - g 85 -2.8 -5.71712 | overlap 390158 TCGGACATAAAAAAA TCAAGG ATA CCTTTA TCGAAGAATTGCTCA M28_Spy0371 388355 - 390202 + | 67 kDa myosin-crossreactive streptococcal antigen TERM 494 390246 - 390223 - f 82 -9.7 -3.70149 | opp_overlap 390223 CTTAGAGTAGTTAAA GCTGATAAG TTTAGG CTTATCAGC TTTTTTGATGATTTA TERM 495 390223 - 390246 + F 100 -10.4 -5.243 | opp_overlap 390223 CTTAGAGTAGTTAAA GCTGATAAGT TTAG GCTTATCAGC TTTTTTGATGATTTA TERM 496 390580 - 390608 + G 71 -6.7 -4.12532 | GTGGGTCGTGGCATG GTGGTCAACACAT CAG ATGTGGTGACAGC TTTATCTATGGCAGA phoH 390361 - 391413 + | hypothetical protein M28_Spy0373 391459 - 392034 + | uracil DNA glycosylase superfamily protein M28_Spy0374 392142 - 392690 + | putative metalloprotease TERM 497 392849 - 392859 + G 73 -5.4 -4.56187 | TTTTTAGCATTTCAG CCAT CGA ATGG TTATTTTTACTTCTA TERM 498 392942 - 392952 + G 73 -5.4 -4.57755 | TAGTTGATTTGGCTA GTGA CTA TCAC TTTTCTATGCTAGCT TERM 499 392988 - 392973 - g 72 -4.7 -4.66609 | opp_overlap 392987 TATGCTAGCTAAAAA TGCCA AGGATA TGGCA GCAGGTGCTGTTTTG TERM 500 392987 - 392998 + G 70 -5.8 -4.40993 | opp_overlap 392973 ATGCCAAGGATATGG CAGC AGGT GCTG TTTTGATGATTTCTG dgk 392671 - 393078 + | diacylglycerol kinase era 393198 - 394094 + | GTP-binding protein Era M28_Spy0377 394069 - 394590 + | phosphohydrolase TERM 501 394662 - 394677 + T 95 -9 -5.63103 | GAAAGACGATGTTTC GAGAGC TTAT GCTCTC TTTTTTTGCTTCCAA TERM 502 394716 - 394736 + T 73 -4.1 -4.90525 | overlap 394718 ATTAAGTCTGAATAA TTTTGTTAA ATG TTAACAGGA TTTTCTTTCCAATTG M28_Spy0378 395150 - 394896 - | hypothetical protein M28_Spy0379 395548 - 395781 + | hypothetical protein M28_Spy0380 395796 - 395978 + | hypothetical protein M28_Spy0381 396435 - 396169 - | transposase M28_Spy0382 396929 - 396348 - | transposase TERM 503 396856 - 396910 + gH 72 -3.2 -5.14985 | gap 1 GTAAACTGAGTCATG GGAATAAATCTCTTTCTAGTGAAGT GTCGTA ACTCTACTATACA-AGATTTATTCC TTTTTGTGTGTTTAC M28_Spy0383 397089 - 397400 + | bacteriocin M28_Spy0384 397413 - 397613 + | hypothetical protein silD 397974 - 398102 + | hypothetical protein M28_Spy0386 398152 - 398448 + | hypothetical protein M28_Spy0387 398627 - 399028 + | hypothetical protein M28_Spy0388 399183 - 399067 - | putative cytoplasmic protein TERM 504 399176 - 399210 + g 93 -6.6 -5.46657 | TCATCTTTGCCAAAG CTCGTCATTTTATATG ATT TATATAGAATTACGGG TTTTTTGTTAGACTA TERM 505 399388 - 399400 + G 77 -7.7 -4.19953 | CAGATTCAGTCCATT CGTCT GAT AGACG TTTTGGAGTTGGCTA TERM 506 400039 - 400023 - g 73 -5.8 -4.62069 | overlap 400037 GTGTTATGGGAAAAA GGCTCC GTAAA AGAGCC TACTGAAGCCGATCA M28_Spy0389 399279 - 400349 + | hypothetical protein M28_Spy0390 400446 - 400844 + | hypothetical protein TERM 507 401175 - 401151 - T 100 -10.8 -5.06451 | opp_overlap 401149 GATTAGCTTAAAAAA GAACACTACC GAAAT GGTAGTGTCC ACTGATTTTAGGAGA M28_Spy0391 401461 - 401192 - | hypothetical protein M28_Spy0392 401662 - 401769 + | hypothetical protein M28_Spy0393 401772 - 401888 + | hypothetical protein M28_Spy0394 402225 - 401983 - | hypothetical protein mutR 402517 - 403398 + | transcriptional regulator TERM 508 404230 - 404214 - gf 81 -7.9 -4.30014 | opp_overlap 404213 TTTAGGAATTGAAAA GGGCGGT TCG ACCGTCC GTACTTACCGTAATG fpg 403570 - 404397 + | formamidopyrimidine-DNA glycosylase coaE 404307 - 404987 + | dephospho-CoA kinase M28_Spy0398 405177 - 406679 + | ATPase TERM 509 406828 - 406860 + G 70 -5.6 -4.37734 | CAAAATCTAAAAGTG GCTTGGCTTGGTAA CTTCT TTACTGGGGCAAGC TTTTCACTTGTTATG M28_Spy0399 406801 - 407994 + | multidrug resistance protein B rpmG 407991 - 408137 + | 50S ribosomal protein L33 secG 408183 - 408419 + | preprotein translocase subunit SecG TERM 510 408424 - 408450 + F 89 -6.6 -5.60993 | opp_overlap 408423 CAAGTAAATAAGGAG TGAGCTTGAC AGAGTTA GTCTAGCTCA TTTTTTTATCAGCGA TERM 511 408642 - 408628 - g 76 -7.2 -4.26076 | overlap 408631 CCAGCCTTATTAAAA CCATTT CCA AAATGG AAAGTCAGAGCCTGT TERM 512 408726 - 408714 - g 87 -3.4 -5.79595 | CGTGAAAAGAAAAAA GAAC CTACT GTTC AGGGTGTTTTTCGTG M28_Spy0402 408513 - 410846 + | exoribonuclease II smpB 410849 - 411316 + | SsrA-binding protein TERM 513 411371 - 411343 - g 71 -6.8 -4.0251 | opp_overlap 411343 411349, overlap 411346 ATTATGATAACTAAA GGACAAGTTCGT TTGTT ACGAACTTATTC TTATGATAGCAACTT TERM 514 411349 - 411365 + G 71 -6.6 -4.05004 | opp_overlap 411346 411343, overlap 411343 ATAACTAAAGGACAA GTTCGT TTGTT ACGAAC TTATTCTTATGATAG TERM 515 411888 - 411876 - g 74 -9.1 -3.55563 | opp_overlap 411876 ACCTGATTCTGGAAA GGTGG TAG CCACC TATGATATTAGTCCT M28_Spy0404 411322 - 412041 + | glutaminyl-peptide cyclotransferase TERM 516 412106 - 412126 + T 79 -4 -5.44119 | opp_overlap 412106, overlap 412123 412124 TTAGCACAAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG TERM 517 412126 - 412106 - T 93 -4 -5.9873 | opp_overlap 412106 412123 412124 TTAGCACAAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG pcp 412805 - 412158 - | pyrrolidone-carboxylate peptidase M28_Spy0406 413781 - 412855 - | permease M28_Spy0407 414521 - 413781 - | permease M28_Spy0408 415661 - 414675 - | glucosyltransferase TERM 518 415736 - 415711 - R 100 -14.9 -5.42198 | opp_overlap 415711 415714 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 519 415711 - 415736 + r 95 -14.9 -3.29038 | opp_overlap 415711, overlap 415714 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 520 415714 - 415733 + r 90 -10.8 -3.77553 | opp_overlap 415711, overlap 415711 TAAAAAATAAAACAA CAGAAGCT TTAA AGCTTCTG TTGTTAATAGTATTA gloA 416123 - 415746 - | lactoylglutathione lyase M28_Spy0410 416799 - 416134 - | NAD(P)H-dependent quinone reductase pepQ 417933 - 416848 - | Xaa-Pro dipeptidase TERM 521 417988 - 417973 - H 79 -4 -5.40474 | overlap 417983 417987 ATTTTTTCAAAAAAA GCTTAA AAAA TCAAGC TTCGAGTTAATTTTT TERM 522 418038 - 417983 - H 71 -3.1 -5.16472 | gap 2, overlap 417973 417987 417999 418032 AAAAAGCTTAAAAAA TCAAGC-TT-CGAGTTAATTTTTGAAA ACTT TTTCAAAAATTAACCTATAACACTTGA AAGTGGTTACAAATC ccpA 418107 - 419108 + | catabolite control protein A TERM 523 419193 - 419166 - f 84 -11.4 -3.01791 | opp_overlap 419172, overlap 419172 ACTGTTTCTTCAATA CTAAAATCAGCC TTAG GGCTGATTTTTG CATGTCTTAGTGAAA TERM 524 419187 - 419172 - f 89 -9 -4.4261 | opp_overlap 419172, overlap 419166 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA TERM 525 419172 - 419187 + F 93 -9 -4.74453 | opp_overlap 419172 419166 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA M28_Spy0413 419239 - 420237 + | glycosyltransferase M28_Spy0414 420239 - 421573 + | 1,2-diacylglycerol 3-glucosyltransferase TERM 526 421791 - 421818 + F 100 -10.6 -6.09196 | TAAGGTGGAACCACG CTGATTGCGTCC TTTG GGATGCGGTCAG TTTTTTTGTTTTGGA thrS 421995 - 423938 + | threonyl-tRNA synthetase TERM 527 423946 - 423975 + F 71 -6.5 -4.1673 | overlap 423952 AAGCTTAATCAATGG CAAAAAGAGGTCC TTAT GGGCTTCTTTTTC TTTCTTAAAAAATTA TERM 528 423952 - 423969 + F 84 -5.5 -5.47159 | overlap 423946 AATCAATGGCAAAAA GAGGTCC TTAT GGGCTTC TTTTTCTTTCTTAAA TERM 529 424124 - 424114 - gf 78 -2.6 -5.42259 | CCACCTTCAAAAAAA TTTT TCC AAAA CCATTAAAGAGCCAG M28_Spy0416 424079 - 425071 + | putative ABC transporter M28_Spy0417 425031 - 425891 + | putative transmembrane protein M28_Spy0418 425893 - 426678 + | ABC transporter permease protein M28_Spy0419 426764 - 426913 + | dihydroxyacetone kinase TERM 530 426933 - 426984 + F 70 -8.4 -3.17391 | gap 1, opp_overlap 426922 426915 426939, overlap 426933 426935 426937 426939 426949 TAAAGACAAGGTTTG TCAATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTA ATTCTTTATTCTATA TERM 531 426933 - 426985 + F 74 -6.8 -4.31697 | gap 2, opp_overlap 426922 426915 426939, overlap 426933 426935 426937 426939 426949 TAAAGACAAGGTTTG TCA-ATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTAA TTCTTTATTCTATAT TERM 532 426935 - 426982 + F 83 -11 -3.12788 | gap 1, opp_overlap 426915 426939, overlap 426933 426933 426937 426939 426949 AAGACAAGGTTTGTC AATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTC TAATTCTTTATTCTA TERM 533 426937 - 426980 + F 90 -13.6 -3.10303 | gap 1, opp_overlap 426915 426939, overlap 426935 426933 426933 426939 426949 GACAAGGTTTGTCAA TACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTG TCTAATTCTTTATTC TERM 534 426978 - 426939 - f 85 -11.8 -3.02461 | gap 1, opp_overlap 426939 426937 426935 426933 426933 426949, overlap 426915 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 535 426939 - 426978 + F 93 -14 -3.08961 | gap 1, opp_overlap 426915 426939, overlap 426937 426935 426933 426933 426949 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 536 426949 - 426968 + F 70 -2.2 -5.35459 | gap 1, opp_overlap 426939, overlap 426939 426937 426935 426933 426933 CAATACCATAAAAAA GTTAAG-TG TCA CAGCTTAGC TTTTTTATGGTGTCT TERM 537 428362 - 428346 - gf 71 -8.7 -3.09327 | opp_overlap 428335, overlap 428334 GGACGCTATGGAATA GCTGCTA TAG CAGCAGC TGGTGGCCAAGGGTT M28_Spy0420 427308 - 428456 + | acetyl-CoA acetyltransferase TERM 538 428471 - 428461 - gf 93 -5.4 -5.63517 | TGCCCAAATAAAAAA GCTA TCG TAGC CGATCAGATAAGCTT TERM 539 428971 - 428961 - gf 89 -6.8 -5.27477 | opp_overlap 428961 ATGGCAAGCAAAAAA GGTG AGT CACC TTTACCTTTTACCGA M28_Spy0421 428413 - 429660 + | long-chain-fatty-acid--CoA ligase TERM 540 430216 - 430245 + G 100 -13.7 -4.06419 | opp_overlap 430204 AGACGCCCAAGCTCT GGCCCTTTTTTTG AGGT CTAAAAAAGGGCC TTGTTTGTGGCGGCA M28_Spy0422 429716 - 430750 + | putative cytoplasmic protein vicR 430912 - 431622 + | two-component response regulator TERM 541 431906 - 431896 - g 87 -3.2 -5.7946 | overlap 431879 TGCCCAAGAAAAAAA TCGC TTG GCAA GTATTTTGGCTTATA TERM 542 432878 - 432910 + G 75 -10 -3.23274 | overlap 432883 432885 ATCTGGGCTAAGAGT GACTATGGTAAAGG ATCGA CCTTTACTATTGTC TTGCCTTATGAAAAA TERM 543 432937 - 432926 - g 72 -4.4 -4.72272 | TTGCCTTATGAAAAA GATG CAGC CATC TATGAAGAATGGGAG vicK 431615 - 432967 + | two-component sensor histidine kinase vicX 432971 - 433780 + | zinc-dependent hydrolase TERM 544 433810 - 433842 + F 100 -12.1 -5.62219 | opp_overlap 433809 433810 433812 AGAGAATATGCAAAG TAGCGCTGATTGGTG ATA TACCAGTCAGGGCTA TTTTTTTGATGTCTT TERM 545 433842 - 433810 - f 73 -9.2 -2.87362 | opp_overlap 433810, overlap 433809 433812 AGAGAATATGCAAAG TAGCGCTGATTGGT GATAT ACCAGTCAGGGCTA TTTTTTTGATGTCTT TERM 546 434073 - 434022 - f 89 -6.9 -5.32396 | gap 3, opp_overlap 434024 434025, overlap 434024 434025 AGACTAAAAACAAAA TAG-CTCTATACTATCTGTAGTGGGA AAT TCCC-CT-CAGATAGTGTAGAGTCTT TTGATTGTATGAGAA TERM 547 434024 - 434071 + F 100 -11.7 -4.53034 | gap 3, opp_overlap 434024 434022 434025, overlap 434025 ACTAAAAACAAAATA G-CTCTATACTATCTGTAGTGGGA AAT TCCC-CT-CAGATAGTGTAGAGTC TTTTGATTGTATGAG TERM 548 434070 - 434024 - f 93 -9.7 -4.26857 | gap 2, opp_overlap 434024 434025, overlap 434022 434025 ACTAAAAACAAAATA GCTCTATACTATCTGTAGTGGGA AAT TCCC-CT-CAGATAGTGTAGAGT CTTTTGATTGTATGA TERM 549 434025 - 434069 + F 100 -15.4 -3.86903 | gap 2, opp_overlap 434024 434022 434025, overlap 434024 CTAAAAACAAAATAG CTCTATACTATCTGTAGTGGGA AAT TCCC-CT-CAGATAGTGTAGAG TCTTTTGATTGTATG TERM 550 434069 - 434025 - f 88 -13.2 -3.13674 | gap 2, opp_overlap 434025 434024, overlap 434024 434022 CTAAAAACAAAATAG CTCTATACTATCTGTAGTGGGA AAT TCCC-CT-CAGATAGTGTAGAG TCTTTTGATTGTATG TERM 551 434162 - 434135 - f 73 -4.2 -4.85267 | opp_overlap 434135 ATAAATCACGAAAAA TCCACTTAGA GTCGGTTT TCTAGGTGGA TTTTTGGTATACTAA TERM 552 434135 - 434162 + F 83 -7.1 -4.82667 | opp_overlap 434135 ATAAATCACGAAAAA TCCACTTAGAG TCGGTT TTCTAGGTGGA TTTTTGGTATACTAA rnc 434213 - 434905 + | ribonuclease III TERM 553 436618 - 436606 - g 100 -5.5 -5.78622 | TTATTTGAAAAAAAA TCGCC AAG GACGA GCAACTTTTTTACCT smc 434906 - 438445 + | chromosome partition protein smc TERM 554 438450 - 438468 + T 100 -9.6 -5.52909 | opp_overlap 438450 TGACCAATTAAAAAA CAGAAGGG AGT TCCTTCTG TTTTTTTGGATGTTC TERM 555 438468 - 438450 - T 95 -8.9 -5.30155 | opp_overlap 438450 TGACCAATTAAAAAA CAGAAGG GAGTT CCTTCTG TTTTTTTGGATGTTC TERM 556 438593 - 438568 - T 100 -12 -4.60949 | opp_overlap 438568 TAGAGTACAAAGAAA GCCTTGGAAA TAGCAG TTTCCAAGGC TTTTTAGCTGTCGAT TERM 557 438568 - 438593 + T 100 -12.7 -4.71061 | opp_overlap 438568 TAGAGTACAAAGAAA GCCTTGGAAAT AGCA GTTTCCAAGGC TTTTTAGCTGTCGAT M28_Spy0428 439570 - 438698 - | transcriptional regulator TERM 558 438879 - 438895 + g 79 -6.7 -4.57755 | opp_overlap 438882 TCATAGAAGTTTAAT TCATTAT CTA ATAATGA TTTTATCTCATCAAT TERM 559 439619 - 439574 - H 71 -3.5 -5.06414 | overlap 439578 CTTTCCCAACAAAAA TCAATTCCGTTTTTTTTTATT GTAC AATAAATAAAAACTGAAAGGA AGTCCGCTTATGAAG TERM 560 439615 - 439578 - H 73 -7.3 -3.9407 | overlap 439574 CCCAACAAAAATCAA TTCCGTTTTTTTTTATT GTAC AATAAATAAAAACTGAA AGGAAGTCCGCTTAT TERM 561 439705 - 439722 + H 75 -8.5 -3.43109 | opp_overlap 439705, overlap 439703 TTGGTGGGTAAGTTA CTTAGGT GTAC ACCTAAG TCTTTAGATACTCTA TERM 562 439722 - 439742 + H 89 -11.3 -3.3854 | opp_overlap 439722, overlap 439703 TAGGTGTACACCTAA GTCTTTAGA TAC TCTAAAGAC TTATAGGTAATGGTT TERM 563 439742 - 439722 - H 84 -11.3 -3.12668 | opp_overlap 439703 439722 TAGGTGTACACCTAA GTCTTTAGA TAC TCTAAAGAC TTATAGGTAATGGTT aroE.2 439769 - 440695 + | shikimate 5-dehydrogenase M28_Spy0430 440692 - 441528 + | putative cytoplasmic protein M28_Spy0431 441506 - 442264 + | hypothetical protein M28_Spy0432 442257 - 443243 + | hypothetical protein metK1 443253 - 444452 + | S-adenosylmethionine synthetase M28_Spy0434 444436 - 445404 + | hypothetical protein M28_Spy0435 445459 - 446448 + | glycosyltransferase M28_Spy0436 446851 - 447117 + | hypothetical protein M28_Spy0437 447141 - 448298 + | UDP-glucose 6-dehydrogenase TERM 564 448709 - 448722 + G 70 -3.1 -4.9218 | ACTAATGTTATCTTG GCATT TATG AGTGC TTTTTCTAGTCCATC TERM 565 448782 - 448772 - g 74 -4 -5.07107 | GAAATTGTTAAAAAA GATA GTA TATC ACAACTTAATTCATT mefE 448415 - 449590 + | macrolide-efflux protein TERM 566 449681 - 449640 - T 77 -9.6 -3.03151 | opp_overlap 449640, overlap 449639 TTTTTCAAAGTAAAG GCACTAAGTTGATCTGAC TTACAC ATCTTATCAACTTAGTGC TTTTTTTATTTCTAG TERM 567 449640 - 449681 + T 100 -8.9 -6.02919 | opp_overlap 449640 449639 TTTTTCAAAGTAAAG GCACTAAGTTGATCTGA CTTACACA TCTTATCAACTTAGTGC TTTTTTTATTTCTAG M28_Spy0439 449902 - 449693 - | transcriptional regulator M28_Spy0440 451550 - 449892 - | chromosome segregation ATPase TERM 568 450595 - 450617 + g 76 -3.4 -5.31275 | opp_overlap 450595 450594, overlap 450597 CGTTCAGTTGAGAAT TCGGAATCTA AAA TAGTTTCCAA TTTTTTGTGGTAAGC TERM 569 450780 - 450806 + g 100 -15.3 -5.30199 | AAGACTGCTTTCTAA CTCCAGCTTAG TATTT CTAAGCTGGAG TTTTTGTTGATTTTT M28_Spy0441 451765 - 451541 - | hypothetical protein M28_Spy0442 452658 - 451765 - | hypothetical protein M28_Spy0443 452674 - 452850 + | putative cytoplasmic protein M28_Spy0444 452878 - 453207 + | RelB-domain-containing protein M28_Spy0445 453207 - 453512 + | ParE-domain-containing protein M28_Spy0446 453645 - 453803 + | putative cytoplasmic protein TERM 570 453860 - 453877 + F 93 -7.7 -5.60993 | opp_overlap 453860 AGAAATATACCGAAA GCACTTC AAAG GAGGTGC TTTTTTTGTACCCCA M28_Spy0447 453908 - 454681 + | hypothetical protein TERM 571 454914 - 454882 - T 95 -8.7 -5.14563 | gap 1, opp_overlap 454882 GTCTCTACTAAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT TERM 572 454882 - 454914 + T 89 -8.7 -4.44187 | gap 1, opp_overlap 454882 GTCTCTACTAAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT M28_Spy0448 455854 - 455123 - | transposase TERM 573 455781 - 455796 + g 72 -3.3 -5.04868 | AGAATGACCTTGATA GACTT CACACC AAGTC TTTTGTTTGCTTTGG TERM 574 455941 - 455917 - R 75 -7.2 -4.24204 | opp_overlap 455917 455919 GATTGACACGTAAAA CACGACATAA GGTTG TTGTGTCGTG TTCAAAGCGTAACCG M28_Spy0449 456294 - 455974 - | transposase TERM 575 456373 - 456402 + r 83 -5.8 -5.03314 | AGTTCACTTCAAAAA CGGTCAGGTTAT CGAAAT ATAATCTGGCTG TTTTTTACGAATGGA M28_Spy0450 456549 - 456376 - | hypothetical protein TERM 576 457291 - 457265 - g 80 -11 -3.38281 | overlap 457260 457268 CTACGGAAAATGCAA GACCTGAAATCA AAG TGATTTCAGACC AAGTCATTGGCCACT TERM 577 457288 - 457268 - g 79 -11.3 -2.54586 | overlap 457265 457260 CGGAAAATGCAAGAC CTGAAATCA AAG TGATTTCAG ACCAAGTCATTGGCC M28_Spy0451 456553 - 457350 + | HAD superfamily hydrolase M28_Spy0452 457354 - 458178 + | HAD superfamily hydrolase TERM 578 458288 - 458266 - g 76 -7.1 -4.14627 | overlap 458267 458279 TTTTGACAGAAACAA CTCAGAAAG AGGAG CTTTCTGAA AAAGCCAATGAGCAA TERM 579 458836 - 458820 - g 79 -5.1 -5.17744 | overlap 458822 ACAGATCAAGAAAAA TACAAGC GTA GCTTGAA AAAAACGCGGACTGG TERM 580 458834 - 458822 - g 77 -7.7 -4.20491 | overlap 458820 AGATCAAGAAAAATA CAAGC GTA GCTTG AAAAAAACGCGGACT ftsY 458178 - 459728 + | cell division protein TERM 581 459764 - 459737 - T 100 -8.4 -5.88565 | opp_overlap 459737 TTTATAAGAAAAAAA CCAGTCTTGTTC AACA GAACGAGGCTGG TTTTTAAGTAAGTCA TERM 582 459737 - 459764 + T 100 -12.8 -4.67353 | opp_overlap 459737 TTTATAAGAAAAAAA CCAGTCTTGTTC AACA GAACGAGGCTGG TTTTTAAGTAAGTCA M28_Spy0454 461149 - 459782 - | multidrug resistance protein B TERM 583 460898 - 460888 - G 72 -4.6 -4.81249 | TGCCAAATGTAAAAA GACC TGT GGCC ATAAAAAAGAGGGGT TERM 584 461092 - 461112 + g 85 -8.3 -4.43397 | overlap 461093 AAAAACCAATGAGTG CTATGGCGA TAA TCGCCATAA TTGTTTGTTTTGAAA TERM 585 461093 - 461111 + g 83 -11.8 -3.24954 | overlap 461092 AAAACCAATGAGTGC TATGGCGA TAA TCGCCATA ATTGTTTGTTTTGAA TERM 586 462247 - 462232 - g 89 -5.4 -5.39721 | opp_overlap 462232 TGAGGAGATAAAAAA GCGGTA CAAC TACCAC CTTAATTCAAGCGAA licT 461477 - 462319 + | BigG family transcription antiterminator TERM 587 462406 - 462384 - g 80 -10.6 -3.31416 | opp_overlap 462385, overlap 462379 AAAACAAATATTCAA CGTGTGACAC ACT GTGTAACACG TCTACGCTTAGTACT TERM 588 463385 - 463363 - g 73 -5.5 -4.65032 | opp_overlap 463376 CAAAGCAGAAACAAA CACGTCAAG TTGCC CTTGCCGCG GGGATTTCAGCTTTG TERM 589 463931 - 463919 - g 86 -7.7 -5.00616 | TGTTGCCTTAAAAAA CACAC GTG GTGTG GAAGTCTTGATTCAT M28_Spy0456 462321 - 464183 + | PTS system, beta-glucoside-specific IIABC component TERM 590 464784 - 464774 - g 76 -2.4 -5.38839 | GACAGAAAAAGAAAA GCTG AGC CTGC AAGATTTATACCAAG bglA 464202 - 465626 + | 6-phospho-beta-glucosidase TERM 591 465684 - 465710 + T 95 -8.9 -5.54885 | opp_overlap 465684 GATAAAACTCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT TERM 592 465710 - 465684 - T 83 -6.7 -4.89729 | opp_overlap 465684 GATAAAACTCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT M28_Spy0458 466564 - 465725 - | hypothetical protein M28_Spy0459 467442 - 466540 - | hypothetical protein TERM 593 467409 - 467394 - G 71 -4 -5.00642 | overlap 467396 467401 TAATGGACATAAAAA TCGCAA ACCA TTGCAA GACACTGGGAGGAAG TERM 594 467502 - 467470 - H 71 -5.6 -4.50976 | gap 1, opp_overlap 467492, overlap 467472 467473 467475 TTCTAGATGATAAAA GAGGAGGCTGAAACA CGAA TGTT-CAGCCTCGAC TGATACGTTTTGTTA TERM 595 467499 - 467473 - H 79 -10.3 -2.91099 | gap 1, opp_overlap 467492, overlap 467472 467470 467475 TAGATGATAAAAGAG GAGGCTGAAACA CGAA TGTT-CAGCCTC GACTGATACGTTTTG M28_Spy0460 467576 - 467773 + | hypothetical protein TERM 596 467811 - 467827 + TF 71 -3 -5.05153 | AACAATGCCAAAGCG GAAGTG CTGTT TACTTC TTTCTTTTTTAAAAT M28_Spy0462 467999 - 467871 - | hypothetical protein M28_Spy0461 467979 - 470111 + | transcription accessory protein TERM 597 470208 - 470228 + GF 75 -6.9 -4.11394 | TGGCGGTCGCTTTTT TCCAAAAGA TGG TCATTTGGA TTTTAACCCTAGGAT TERM 598 470458 - 470429 - gf 76 -10.1 -2.84687 | opp_overlap 470438, overlap 470438 CTAATCATCATTATA GTTGCCAAACCTG TGGG CAGGTTTATCAAC GAAAAAGGCGTATCA M28_Spy0463 470053 - 470535 + | hypothetical protein TERM 599 470541 - 470526 - f 77 -3.2 -5.47821 | opp_overlap 470521 470526 470527, overlap 470527 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA TERM 600 470526 - 470541 + F 79 -5.4 -5.07652 | opp_overlap 470526 470527, overlap 470521 470527 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA M28_Spy0464 470599 - 470871 + | stress-responsive transcriptional regulator PspC TERM 601 470956 - 470991 + F 77 -6.2 -4.7629 | overlap 470963 TTGATATGTAAGTAA GCGAGGGGTCTTATCA GCTA TGATGAGGCTTTTTGC TTTTTGACTTAGTAA TERM 602 470963 - 470984 + F 83 -5.9 -5.18355 | overlap 470956 GTAAGTAAGCGAGGG GTCTTATCA GCTA TGATGAGGC TTTTTGCTTTTTGAC ptsK 471176 - 472168 + | HPr kinase/phosphorylase lgt 472165 - 472944 + | prolipoprotein diacylglyceryl transferase M28_Spy0467 472966 - 473373 + | hypothetical protein TERM 603 473484 - 473474 - gT 73 -5.4 -4.57341 | AATCGTGCTGAAAAA GCTT ATC AAGC CTACAAAGAAAGTCC M28_Spy0468 473345 - 473794 + | hypothetical protein TERM 604 473886 - 473901 + T 95 -3.3 -6.20267 | ACTGAAGAAGGGGGG GATTG TGGCTT CAATC TTTTTTTGTTTTTGA TERM 605 473947 - 473928 - T 100 -7.2 -6.02914 | gap 1 TTGACACAAAAAAAA GAGTCACGT AAA ACG-GACTC TGGAAGTTACATCAG M28_Spy0469 474238 - 473954 - | hypothetical protein M28_Spy0470 474437 - 475363 + | U32 family peptidase M28_Spy0471 475465 - 476751 + | U32 family peptidase TERM 606 476767 - 476819 + F 100 -7.3 -7.14698 | gap 2, opp_overlap 476769 476786, overlap 476769 TAACAAGAAATATTA GAGGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCCTG TTTTTTTTTTTTTTT TERM 607 476817 - 476769 - f 77 -9.9 -3.02508 | gap 2, opp_overlap 476767 476769, overlap 476786 ACAAGAAATATTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTTTTTT TERM 608 476769 - 476817 + F 100 -9.9 -5.06465 | gap 2, opp_overlap 476769 476786, overlap 476767 ACAAGAAATATTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTTTTTT TERM 609 476931 - 476907 - f 89 -6.6 -5.64274 | opp_overlap 476907 TGAGTCATAAAAAAA GTGAAAAAAA GATGA TTTTTTCCAC TTTAATTTCGAATAG M28_Spy0472 476968 - 477180 + | putative cytoplasmic protein M28_Spy0473 477417 - 477277 - | hypothetical protein TERM 610 477480 - 477455 - R 100 -14.9 -4.16842 | opp_overlap 477458 GCTACTGTTAATAAA CCAGTCTTCAT GGTA ATGAAGACTGG TTAGAGATAATAAAA TERM 611 477458 - 477477 + r 72 -9.4 -2.72661 | opp_overlap 477455 ACTGTTAATAAACCA GTCTTCAT GGTA ATGAAGAC TGGTTAGAGATAATA lysS 479058 - 477553 - | lysyl-tRNA synthetase TERM 612 477963 - 477975 + g 77 -6.3 -4.62069 | TGATGATATGTCCGA CACTT GTG AAGTG TTTTTCGAGTGGGAC TERM 613 478696 - 478719 + g 79 -5.2 -5.07107 | GACTTCGCCCTCAAC GCCGATAAAG TCGC CTAAATCGGC TTTTTTGAAGATTTC TERM 614 479854 - 479868 + G 73 -7.1 -4.02334 | opp_overlap 479854 479853 GTCGTCAGCTAAAAC CAGGC ACTAA GCCTG TTTATGATGTGGCTA M28_Spy0475 479220 - 480122 + | HAD superfamily hydrolase M28_Spy0476 480853 - 480230 - | phosphoglycerate mutase M28_Spy0477 481673 - 481194 - | transcriptional regulator TERM 615 481707 - 481730 + r 86 -5.4 -5.58454 | opp_overlap 481707 TCTAAACATAAAAAA TGGTATAACA ACAT TATTATACCA TTTTTTTAATGTAAG TERM 616 481730 - 481707 - R 93 -7.6 -5.56264 | opp_overlap 481707 TCTAAACATAAAAAA TGGTATAACA ACAT TATTATACCA TTTTTTTAATGTAAG M28_Spy0478 482371 - 481763 - | thiamine transporter TERM 617 482354 - 482333 - G 93 -8.1 -5.36441 | opp_overlap 482331 TGGTGACATAAAAAA CTCCTTTTG TGCA CAAAAAGAG TATCGCTTTCCAATC TERM 618 482499 - 482519 + r 83 -8.3 -4.36127 | opp_overlap 482498 482499, overlap 482491 ATATGATGAGATAAT CTCCTTGTC AAG GATAAGGGG TTTTAAATTATTGAC TERM 619 482592 - 482573 - R 85 -4.3 -5.75599 | opp_overlap 482573 TAAACTATAAAAAAA GATTAGC CATGAT GCTAACC TCTTAATTGTTGGAG M28_Spy0479 483443 - 482595 - | N-acetylmuramoyl-L-alanine amidase TERM 620 483981 - 483991 + G 73 -5.4 -4.6265 | CCTTGGGTCTTTTGG CAAG TTA CTTG TTTTGTGCTTGTTCT M28_Spy0480 483768 - 484271 + | integral membrane protein M28_Spy0481 484255 - 484638 + | hypothetical protein TERM 621 484691 - 484642 - T 93 -13.3 -3.45571 | opp_overlap 484651 484656, overlap 484645 484649 484656 GTTTTTAAATAGTAA CTATTAATACAAAATAGACTTGG CACG CCAAGTCTATTTTATATTAACCA AGAAGTGCTTTAAGG TERM 622 484688 - 484645 - T 100 -19.4 -2.8742 | opp_overlap 484651 484656, overlap 484642 484649 484656 TTTAAATAGTAACTA TTAATACAAAATAGACTTGG CACG CCAAGTCTATTTTATATTAA CCAAGAAGTGCTTTA TERM 623 484684 - 484649 - T 100 -15.8 -3.30212 | opp_overlap 484651 484656, overlap 484645 484642 484656 AATAGTAACTATTAA TACAAAATAGACTTGG CACG CCAAGTCTATTTTATA TTAACCAAGAAGTGC TERM 624 484651 - 484682 + T 85 -11.8 -3.01791 | opp_overlap 484649 484645 484642 484656, overlap 484656 TAGTAACTATTAATA CAAAATAGACTTGG CACG CCAAGTCTATTTTA TATTAACCAAGAAGT TERM 625 484656 - 484677 + T 100 -11.7 -4.66537 | opp_overlap 484649 484645 484642 484656, overlap 484651 ACTATTAATACAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA TERM 626 484677 - 484656 - T 100 -11.7 -4.71186 | opp_overlap 484656 484651, overlap 484649 484645 484642 ACTATTAATACAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA M28_Spy0482 485083 - 484685 - | glutathione peroxidase pepF 487030 - 485156 - | oligoendopeptidase F TERM 627 485433 - 485421 - G 70 -9.1 -3.1876 | AAGCCCATGTAGTAA TGCGC TTG GCGCA TCCAGGTAAGAGCTG ppc 487099 - 489912 + | phosphoenolpyruvate carboxylase TERM 628 490793 - 490813 + G 80 -4.7 -5.25656 | overlap 490795 490797 CCTGTTTTTGGCTAT GTCGCTAAA CGT TTTAGTGCC TTTTTTAATCCTTTT ftsW 490052 - 491356 + | cell division protein TERM 629 491391 - 491357 - T 100 -19 -3.69338 | opp_overlap 491367, overlap 491367 AAGCAATTTCAATAA TATTCTAAAATCTCCT TTA AGGAGATTTTAGAATA TAGACAATCCCAGTT TERM 630 491367 - 491381 + T 85 -8.6 -4.16943 | opp_overlap 491357 491367 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAGAC TERM 631 491381 - 491367 - T 85 -8.6 -4.21314 | opp_overlap 491367, overlap 491357 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAGAC M28_Spy0486 491513 - 491373 - | putative cytoplasmic protein tuf 491710 - 492906 + | elongation factor Tu TERM 632 492962 - 492978 + F 100 -10.8 -4.87807 | opp_overlap 492962 CTTAAGTTTGAAGAA GCCCCC AATTC GGGGGC TTTTTGCTATCTTAA TERM 633 492978 - 492962 - f 90 -11.5 -3.65314 | opp_overlap 492962 CTTAAGTTTGAAGAA GCCCCCA ATT CGGGGGC TTTTTGCTATCTTAA tpiA 493147 - 493905 + | triosephosphate isomerase TERM 634 493900 - 493958 + T 91 -13 -3.25942 | gap 1, opp_overlap 493906 493919 493956, overlap 493906 493919 TTGCTTGATTTCCTT -AACTAAGTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGACTTAACTC TTACTATGAGAGAAT TERM 635 493906 - 493951 + T 100 -22.4 -3.21062 | opp_overlap 493906 493919, overlap 493900 493919 GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGAC TTAACTCTTACTATG TERM 636 493951 - 493906 - T 100 -22.4 -3.34013 | opp_overlap 493906 493900 493919, overlap 493919 GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGAC TTAACTCTTACTATG TERM 637 493919 - 493938 + T 84 -6.5 -5.10497 | opp_overlap 493906 493919, overlap 493906 493900 AAGTCATCTAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT TERM 638 493938 - 493919 - T 84 -6.5 -5.10497 | opp_overlap 493919 493906 493900, overlap 493906 AAGTCATCTAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT M28_Spy0489 495239 - 494004 - | methicillin resistance expression factor TERM 639 494202 - 494216 + g 70 -8.6 -3.41051 | CTTGTGAATTGCCTT GAGCAT AGC ATGCTC TTGTAATAGAGCTGG TERM 640 494804 - 494815 + g 73 -5.8 -4.58663 | opp_overlap 494792 AAACAGGTTCACCCT CAGG ATAG CCTG TTTTTAAACCGTCAT murM 496467 - 495226 - | UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase TERM 641 495616 - 495626 + g 79 -3.2 -5.50313 | TAAATCTTTTTGTAG CCGT GCA ATGG TTTTTTGATTTTCTG TERM 642 495693 - 495717 + g 95 -3 -6.09888 | gap 2, overlap 495693 495694 CTTGTTCTGCTAAGG C-CTTG-TCCAA CTG TTGGATCAAGAG TTTTTTTTGTTCAGG TERM 643 495826 - 495836 + g 79 -3.2 -5.52384 | AAGGATAATGCCTTT TCGA TTC TCGG TTTTTTTCATCAAGG M28_Spy0491 497261 - 496452 - | HAD superfamily hydrolase TERM 644 496799 - 496813 + g 83 -7.2 -4.70887 | opp_overlap 496796 496799 CAGGTTCATCAATCA TCATCA TTT TGATGA TTTCTTTATTGGTCA TERM 645 497446 - 497419 - R 100 -14.4 -4.90266 | opp_overlap 497421 497426 TGTAGTAACTAAAAA GATTGAAGAAAG TACT CTTTCTTCAATC TTAGAATGGAGACAA TERM 646 497421 - 497444 + r 84 -11.2 -3.05844 | opp_overlap 497419, overlap 497426 TAGTAACTAAAAAGA TTGAAGAAAG TACT CTTTCTTCAA TCTTAGAATGGAGAC M28_Spy0492 497645 - 497412 - | putative cytoplasmic protein TERM 647 497658 - 497632 - G 70 -3.6 -4.86385 | overlap 497640 497647 AGGCTCAAAAATAAA GCATAGAATTCC AAA GGAAGTCGCTGC CATAAGCATCACCTA M28_Spy0493 499018 - 497717 - | dGTP triphosphohydrolase TERM 648 498030 - 498008 - G 76 -9.2 -3.75015 | ATAATCTGGATCAAA GCCAACTGAT TCG ACCAATTGGC GCAAGCGTTCTAACT TERM 649 498501 - 498489 - G 77 -4.9 -4.91109 | TTGGCAGCAGAAAAA TAAGA ATC TCTTA AAAGGTAATCCATAC M28_Spy0494 499100 - 499486 + | putative cytoplasmic protein TERM 650 499645 - 499670 + F 89 -7 -5.27335 | opp_overlap 499632 499665 499667 AATCTTAAACAGCGA GACTTGTTTA AGAAAA TAAACAGGTC TTTTTATTTGAACAA TERM 651 499703 - 499665 - f 81 -6.2 -4.87892 | opp_overlap 499645, overlap 499667 GTTTAAGAAAATAAA CAGGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACCAA GGAGGTACTAATTTG TERM 652 499701 - 499667 - f 93 -11 -4.04859 | opp_overlap 499645, overlap 499665 TTAAGAAAATAAACA GGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACC AAGGAGGTACTAATT pacL 499716 - 502397 + | calcium-transporting ATPase TERM 653 502410 - 502433 + T 100 -14 -5.67967 | opp_overlap 502410 TAATAGACGCTAAAA GGTTTGAGAC AATT GTCTCAAACC TTTTTTTATAATCGT TERM 654 502433 - 502410 - T 100 -14 -4.19472 | opp_overlap 502410 TAATAGACGCTAAAA GGTTTGAGAC AATT GTCTCAAACC TTTTTTTATAATCGT regR 503512 - 502481 - | LacI family transcription regulator M28_Spy0497 505465 - 503540 - | oligohyaluronate lyase TERM 655 505524 - 505473 - R 77 -4.7 -5.07652 | opp_overlap 505453, overlap 505478 505522 CTTTCCAAAAGAAAA GAGAC-CTGTTAATGTGACTAGGAA ATAG TTCCTAAACCCAT-AACAGAATCTC AGTGACAACTAAGCT agaD 506414 - 505533 - | PTS system, N-acetylgalactosamine-specific IID component TERM 656 506309 - 506299 - GR 73 -6.8 -4.24342 | opp_overlap 506299 506297 506301 TTTTGTAGGAAGAAA GCTC TCA GAGC TGTTTTGAGGTAATC M28_Spy0499 507123 - 506341 - | PTS system, N-acetylgalactosamine-specific IIC component agaV 507630 - 507142 - | PTS system, N-acetylgalactosamine-specific IIB component TERM 657 507220 - 507210 - G 79 -6.8 -4.56597 | TTTTGGTGTTAAAAA CCAC GTG GTGG TCATGGGCTAAGCAA M28_Spy0501 508865 - 507666 - | unsaturated glucuronyl hydrolase TERM 658 508432 - 508448 + g 82 -10.9 -3.50393 | TGGATTAATTTGTCG GCTGCTT TCA AAGCAGC TTCTCTAGACTCAGG M28_Spy0502 509302 - 508865 - | PTS system, N-acetylgalactosamine-specific IIA component TERM 659 510325 - 510339 + G 82 -6.4 -4.87665 | overlap 510327 GGACAACAGAAGACT TAGCTG GTC CAGCTG TTTTTCTAGCTAGCG TERM 660 510327 - 510337 + G 71 -6.8 -4.06182 | overlap 510325 ACAACAGAAGACTTA GCTG GTC CAGC TGTTTTTCTAGCTAG idnO 509637 - 510431 + | gluconate 5-dehydrogenase TERM 661 510495 - 510482 - g 79 -6.7 -4.50193 | ATTAATTAATGAAAA TAGCC AAGC GGCTA AAAATGGTATTATTT M28_Spy0504 510456 - 511097 + | hypothetical protein M28_Spy0505 511087 - 512127 + | 2-dehydro-3-deoxygluconokinase kgdA 512114 - 512767 + | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 662 513407 - 513442 + G 73 -7 -4.20148 | opp_overlap 513441 CTCGAAGCGTCAGGA TGTTTTGTTGGCGTTG GAGA CAACGCAAATAAAAGA TTATTTTGAAATAAT TERM 663 513458 - 513441 - g 79 -5.7 -4.94962 | opp_overlap 513407 ACAACGCAAATAAAA GATTATT TTGA AATAATC CTAGCGCGTGAAGAT TERM 664 513584 - 513573 - g 75 -5.8 -4.74453 | GAAGACAGCGAAAAA GGCA TTGC TGCC GCCAAAGCGGCCAAT M28_Spy0507 513057 - 513713 + | beta-phosphoglucomutase TERM 665 514676 - 514662 - g 70 -2.8 -5.10029 | overlap 514674 AGCAACCTCAAAAAA CACCTT ATA AACGTG GAAAAATTACACCTA M28_Spy0508 514358 - 515533 + | iron-sulfur cluster-binding protein TERM 666 515810 - 515792 - g 71 -6 -4.26079 | opp_overlap 515791 CTAAATGAGTTAAAA GGTAAGTA TGA TACTTTCC ATAATATGCAAGAAT TERM 667 516007 - 515988 - g 71 -7.2 -3.89524 | gap 1, overlap 515992 ATGCTATCTTAGAAA TCCATCCTG GTT CAGGA-GGA ACTGAAGCGCAAGAT prfB 515687 - 516700 + | peptide chain release factor 2 TERM 668 517091 - 517073 - gf 80 -4.4 -5.21709 | opp_overlap 517072 517073 CGCCACATTAAAAAA CGCGTGCC AGA GGTACTCG ATTTAGTTGGCTTGA ftsE 516719 - 517411 + | cell division ATP-binding protein ftsX 517374 - 518333 + | cell division protein TERM 669 518557 - 518513 - T 100 -14.6 -4.90381 | opp_overlap 518514 518516 518524, overlap 518514 TTCAAGAGAAGAAAA GCACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTGT CATTCAAAATTTAGT TERM 670 518556 - 518514 - T 100 -18.1 -3.53144 | opp_overlap 518514 518516 518524, overlap 518513 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTG TCATTCAAAATTTAG TERM 671 518514 - 518556 + T 100 -19.5 -2.74514 | opp_overlap 518514 518513, overlap 518516 518524 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGGTG TCATTCAAAATTTAG TERM 672 518516 - 518554 + T 100 -16.3 -2.91467 | opp_overlap 518514 518513, overlap 518514 518524 AAGAGAAGAAAAGCA CCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGG TGTCATTCAAAATTT M28_Spy0512 519341 - 518643 - | hydroxyacylglutathione hydrolase M28_Spy0513 519482 - 520273 + | acetoin reductase TERM 673 520290 - 520312 + F 100 -15 -5.61913 | opp_overlap 520287 520286 520284 AATGATTAATACTGA CACTGTGAGT TTC ACTCACAGTG TTTTTTATATTTCTT TERM 674 521564 - 521550 - g 79 -4.9 -5.04868 | opp_overlap 521550 CGAAATCAAACAAAA GCAGC GCTTT GCCGC TTATTTTGAACAGCT TERM 675 521947 - 521932 - g 72 -4.7 -4.73614 | TACTATCAAAATAAA GAGCA CCAGCT TGCTC ATGATTGGTCTCGTA TERM 676 522435 - 522394 - g 85 -6.7 -5.09426 | gap 1, opp_overlap 522373 522392, overlap 522427 522428 TTTAATTCTAAAAAA CACTTGCTGTTGGTTTCAGA CTA TCT-AGACCAATGGCAAGTG CCTCACTTAGCGCAG dinG 520381 - 522882 + | bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon TERM 677 522869 - 522909 + F 100 -10.8 -4.74801 | opp_overlap 522867, overlap 522870 TAGTAGAAACGGACT GTTTTCTGATATAATGGA AAGGA TCTATTATATCAGAAAAA TTTTTAATGGCGTTA TERM 678 522870 - 522908 + F 100 -14.3 -3.44158 | opp_overlap 522867, overlap 522869 AGTAGAAACGGACTG TTTTCTGATATAATGGA AAGGA TCTATTATATCAGAAAA ATTTTTAATGGCGTT TERM 679 523174 - 523161 - f 79 -5.3 -5.20216 | opp_overlap 523161 TAGATTATGAAAAAA TGATC TGTT GATCA TTAATTAATCTGAAG aspC 523217 - 524410 + | aspartate aminotransferase asnC 524440 - 525786 + | asparaginyl-tRNA synthetase TERM 680 525817 - 525799 - f 77 -3.2 -5.55695 | opp_overlap 525790 525799, overlap 525790 TAATAATACAAAAAA GTTCAT GTCATCT ATGAAC TTTTTGTATTGGTAA TERM 681 525799 - 525817 + F 73 -3.9 -5.1244 | opp_overlap 525799 525790, overlap 525790 TAATAATACAAAAAA GTTCATG TCATC TATGAAC TTTTTGTATTGGTAA M28_Spy0517 526201 - 527091 + | hypothetical protein M28_Spy0518 527088 - 528065 + | transporter TERM 682 528586 - 528554 - g 84 -7.9 -4.68424 | CAACTCATGCAAAAA TTTATGCTAGATG CCAAAAC CATCGAGCATAAA AGCGGTGCAGTTACT M28_Spy0519 528062 - 528973 + | putative cytoplasmic protein TERM 683 528984 - 529007 + F 100 -10.4 -5.71712 | overlap 529005 TATAGAACATTTTTA TCGTATGAGC CTTT GTTCATACGA TTTTTTTGTCTAAAA TERM 684 530108 - 530124 + G 70 -8.7 -3.36878 | CCTCAAGAAATTGCG GCTATCC AGT GGATGGC TTATGGGTCAATGCC pepD 529106 - 530503 + | dipeptidase TERM 685 530516 - 530535 + F 100 -10 -5.05782 | opp_overlap 530516 TAAAAGTGAAGCTAA GGCTGAGC AACT GCTTAGCC TTTTTTACGATAACT M28_Spy0521 530655 - 532202 + | high-affinity zinc uptake system protein ZnuA precursor TERM 686 532217 - 532242 + F 100 -9.1 -5.38054 | opp_overlap 532217 ATCTTAACTCACTAA GCAAATCTTCT TTTA AGGAGGTTTGC TTTTTCTTTGTGGAG M28_Spy0522 532341 - 533072 + | GntR family transcriptional regulator TERM 687 533200 - 533222 + G 79 -4.8 -5.00884 | opp_overlap 533204, overlap 533220 533221 ATGACGTTTTTTGAA GAAACAAGAG ATT CTCTGGATTC TTTTTTAAAGAGAGT agaS 533092 - 534291 + | galactosamine-6-phosphate deaminase (isomerizing) TERM 688 534369 - 534351 - T 100 -11 -5.46706 | opp_overlap 534351 AGGCCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT TERM 689 534351 - 534369 + T 95 -8.8 -5.53436 | opp_overlap 534351 AGGCCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT rpmE2 534648 - 534388 - | 50S ribosomal protein L31 type B M28_Spy0525 535704 - 534763 - | phosphoesterase, DHH family protein TERM 690 535328 - 535340 + g 74 -9.1 -3.49653 | GCAATGATTTCACTT GCGCT AGA AGCGC TTGTGTCCACATAAT M28_Spy0526 536098 - 536547 + | flavodoxin TERM 691 536564 - 536583 + F 83 -6.4 -4.92239 | ACTATTTAGTAAAAA TGTCAGGG ACTT CCTTGGCA TTTTTAGATTTTTAA M28_Spy0527 536722 - 537006 + | hypothetical protein M28_Spy0528 536987 - 538261 + | chloride channel protein TERM 692 538319 - 538295 - f 93 -9.4 -4.30719 | overlap 538297 TTTTGTTAGAATAAA TCTCGTGTGT AATGG ACACACGAAA ATTACGGCTAATCCG TERM 693 538317 - 538297 - f 75 -9.8 -2.50545 | overlap 538295 TTGTTAGAATAAATC TCGTGTGT AATGG ACACACGA AAATTACGGCTAATC rplS 538376 - 538723 + | 50S ribosomal protein L19 TERM 694 538779 - 538751 - T 100 -14.9 -3.71686 | opp_overlap 538751 538757, overlap 538757 CGTAACGTAATAGAA TAAAAAGACTAGA GTC TCTAGTCTTTTTA TGTCGTCGTGACAAT TERM 695 538751 - 538779 + T 95 -14.9 -2.82635 | opp_overlap 538751 538757, overlap 538757 CGTAACGTAATAGAA TAAAAAGACTAGA GTC TCTAGTCTTTTTA TGTCGTCGTGACAAT TERM 696 538757 - 538773 + T 100 -9.5 -5.01497 | opp_overlap 538757 538751, overlap 538751 GTAATAGAATAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 697 538773 - 538757 - T 100 -9.5 -5.29716 | opp_overlap 538751 538757, overlap 538751 GTAATAGAATAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 698 539053 - 539081 + T 83 -7.6 -4.70613 | opp_overlap 539059, overlap 539059 GTCATTATTGTCACT GAAAAAGCCTTT ACATC AAAGGCTTTTTG TTTTATTCCGGTTTT TERM 699 539075 - 539059 - T 83 -7.3 -4.66163 | opp_overlap 539053 539059 ATTGTCACTGAAAAA GCCTTTA CAT CAAAGGC TTTTTGTTTTATTCC TERM 700 539059 - 539075 + T 89 -6.6 -5.62288 | opp_overlap 539059, overlap 539053 ATTGTCACTGAAAAA GCCTTT ACATC AAAGGC TTTTTGTTTTATTCC M28_Spy0530 539299 - 539084 - | DNA integration/recombination/invertion protein TERM 701 539487 - 539504 + H 80 -7 -4.57353 | TGGCATTTTACTATT GACAGG AATTTC CCTGTC TTTTGTCTCCTAAAG M28_Spy0531 539737 - 540306 + | DNA gyrase related protein TERM 702 541254 - 541244 - g 82 -4 -5.42605 | CTAAGAAAAATAAAA TTCT TAA AGAA AATGAGGACAATTTG gyrB 540307 - 542259 + | DNA gyrase subunit B TERM 703 542328 - 542316 - f 80 -6.3 -4.77157 | overlap 542306 CGAATTGACTAAAAA TCATG ATG CATGA TGCCAACAGCTTTGT TERM 704 542382 - 542414 + F 79 -10.1 -3.33171 | opp_overlap 542384 GGGACAGCGTTAATG CATAGGTATTGAG ACCGCCC CTTAATACCTATG TTAGTCCTTATTAAG M28_Spy0533 542627 - 544351 + | septation ring formation regulator EzrA TERM 705 544379 - 544361 - T 77 -8.9 -3.63627 | opp_overlap 544361 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 706 544361 - 544379 + T 95 -8.9 -5.17507 | opp_overlap 544361 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 707 544504 - 544517 + T 77 -5.3 -5.01732 | opp_overlap 544499, overlap 544498 TTTCAAAAATCTTTT CCAAA AGGA TTTGG TTTTTTCAGGAGGTT M28_Spy0534 544941 - 544483 - | putative cytoplasmic protein TERM 708 545724 - 545758 + G 71 -9.5 -2.78371 | gap 1, opp_overlap 545742, overlap 545723 GGGGTGCTGAAGTTT TCCACGCTC-TTAAGA AAAT TCTTAAAGAACGTGGA CTTGTTACAGCTGTA eno 545168 - 546475 + | phosphopyruvate hydratase TERM 709 546608 - 546638 + T 93 -14.2 -2.95896 | opp_overlap 546614, overlap 546614 TTAAAGATTAAAGAA TAGAAAGCTTGGGA AAA TCCCAAGCTTTTTG CTTTCTAAATAGTAA TERM 710 546632 - 546614 - T 100 -13.2 -4.41237 | opp_overlap 546614 546608 ATTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA TERM 711 546614 - 546632 + T 100 -13.2 -5.04601 | opp_overlap 546614, overlap 546608 ATTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA TERM 712 546767 - 546777 + T 74 -6.8 -4.40572 | opp_overlap 546765 546767 TATATTTTAAATACA GGAC TAA GTCC TTTTATACCAATTGT M28_Spy0536 547645 - 547001 - | transposase TERM 713 547040 - 547080 + g 93 -9.8 -5.05505 | AAGGCAATGTCTAGA GGCAATCGTATGTGGCTT GGTTG AAGCTGTTTGCGATTGCC TTTTTCGTTTCTCAT TERM 714 547456 - 547476 + g 71 -6.1 -4.26076 | opp_overlap 547456 TGGCATAGTAGCGAA CCTCTTCTA TCA TCGGAGAGG TTTTCGTAACAGTAA TERM 715 547603 - 547584 - G 77 -10.8 -2.81133 | GATTGACGGATGATA GCTGACAA TGCT TTGTCAGC TAGCTCCAGTACAAA M28_Spy0537 547890 - 547639 - | transposase M28_Spy0538 549806 - 548265 - | transcriptional regulator TERM 716 551402 - 551391 - g 75 -3 -5.25976 | AAGTAAAAAAACAAA TTGA AGAC TCAA TCAATGGTGATGCAT TERM 717 551673 - 551663 - g 85 -5.4 -5.30575 | opp_overlap 551663 GAAAAAGCTAAAAAA TCAC TGG GTGA TTTAAGCGATAAAGT TERM 718 551858 - 551834 - g 74 -5.1 -4.6856 | GAAACAGTGGAAAAA GCTTCTTCTAA AAA TCAGAAAAAAC CAGAATCTTTTGAAG TERM 719 552674 - 552650 - g 76 -2.2 -5.4182 | AAGGATAAAGAAAAA CTTCTTGC AGAGTTGAA GCAAAAAG CAGATGATACTGAAA TERM 720 552786 - 552770 - g 74 -5.1 -4.70626 | overlap 552771 GAAGAACTTCAAAAA GCAACAG AAG CTGTTGG AGCAATTGACAATCG TERM 721 552785 - 552771 - g 70 -8.6 -3.41291 | overlap 552770 AAGAACTTCAAAAAG CAACAG AAG CTGTTG GAGCAATTGACAATC TERM 722 553597 - 553582 - g 79 -9 -3.79841 | overlap 553573 CAAGAACCAACATAA GACAGG TGAC CCTGTC GTAGCTCGTCGTGAG TERM 723 553840 - 553825 - g 79 -9 -3.79841 | overlap 553816 CAAGAACCAACATAA GACAGG TGAC CCTGTC GTAGCTCGTCGTGAG TERM 724 554926 - 554912 - g 83 -7.2 -4.77438 | overlap 554922 ACTCATGACCAAAAA GTTGAT CAA ATCAAC AAAGTTGAACAAGCT TERM 725 555428 - 555408 - g 72 -4.6 -4.73432 | overlap 555410 CTAAAGACAAACAAA CAGCAGCG GTTGA CGCAGCTA AGAATACAGCAATTG TERM 726 556491 - 556463 - g 72 -9 -3.40403 | GTTCGTTCAGCACAA TCTATTGCGTCT GTGAA AGAAGCAATAGA TAAAGGTATTACTGC epf 550352 - 556672 + | putative extracellular matrix binding protein TERM 727 556715 - 556740 + F 100 -14.9 -5.1101 | opp_overlap 556715 TACTATATTTTCAAA CCAAGGTGATT TTGA AATCACCTTGG TTTTTTGGATCGTAA TERM 728 556740 - 556715 - f 100 -14.9 -3.59738 | opp_overlap 556715 TACTATATTTTCAAA CCAAGGTGATT TTGA AATCACCTTGG TTTTTTGGATCGTAA sagA 557537 - 557698 + | streptolysin S precursor TERM 729 557844 - 557890 + F 83 -9.7 -3.74693 | gap 1, opp_overlap 557853, overlap 557845 557847 557849 557853 TCTTGATGCTAACGT C-TCAGGTAATTAGCAGGTACT AGAT AGTACCTGCTAATTACTATATG TTTAGTAAAATGAGA TERM 730 557845 - 557888 + F 95 -13.4 -3.4582 | opp_overlap 557853, overlap 557844 557847 557849 557853 CTTGATGCTAACGTC TCAGGTAATTAGCAGGTACT AGAT AGTACCTGCTAATTACTATA TGTTTAGTAAAATGA TERM 731 557847 - 557886 + F 100 -16 -3.29972 | opp_overlap 557853, overlap 557845 557844 557849 557853 TGATGCTAACGTCTC AGGTAATTAGCAGGTACT AGAT AGTACCTGCTAATTACTA TATGTTTAGTAAAAT TERM 732 557849 - 557884 + F 100 -20.8 -3.21269 | opp_overlap 557853, overlap 557847 557845 557844 557853 ATGCTAACGTCTCAG GTAATTAGCAGGTACT AGAT AGTACCTGCTAATTAC TATATGTTTAGTAAA TERM 733 557853 - 557880 + F 100 -15.8 -3.40082 | opp_overlap 557853, overlap 557849 557847 557845 557844 TAACGTCTCAGGTAA TTAGCAGGTACT AGAT AGTACCTGCTAA TTACTATATGTTTAG TERM 734 557880 - 557853 - f 100 -15.8 -3.06133 | opp_overlap 557853 557849 557847 557845 557844 TAACGTCTCAGGTAA TTAGCAGGTACT AGAT AGTACCTGCTAA TTACTATATGTTTAG sagB 557920 - 558870 + | streptolysin S biosynthesis protein sagC 558867 - 559925 + | streptolysin S biosynthesis protein TERM 735 560931 - 560943 + GF 70 -4.1 -4.81851 | opp_overlap 560909 TGCAAATATTGAATG CGAAG AAC CTTTG TTTTTAGATTTAGAT TERM 736 561190 - 561205 + GF 71 -7.6 -3.67558 | TGGTACGTCACGCGA GTTCTG ATGC CAGAAC TTCTTGAAATGTGTA sagD 559945 - 561303 + | streptolysin S biosynthesis protein TERM 737 561783 - 561794 + GF 73 -2.2 -5.31877 | TAAATCACTTATTGA TGGG GAAA TCCA TTTTTTATGCTAAGT sagE 561278 - 561949 + | streptolysin S putative self-immunity protein sagF 561946 - 562629 + | streptolysin S biosynthesis protein TERM 738 563015 - 562991 - g 86 -7.3 -5.0538 | opp_overlap 562995 GCTCAGCTTAAAAAA CAAGTTCTAAA AAG TTTAGAATTTG TGGGGCTACACTCCC sagG 562652 - 563575 + | streptolysin S export ATP-binding protein sagH 563584 - 564711 + | streptolysin S export transmembrane protein sagI 564708 - 565826 + | streptolysin S export transmembrane protein TERM 739 565872 - 565910 + F 100 -9.1 -5.00412 | opp_overlap 565865, overlap 565860 TTAGCTAACTACCAG GTAGCCCTTTTATTG GCTTATATG CAATAAAAGGGTTGC TTTTTGCTTATATTT TERM 740 567623 - 567660 + G 77 -9.9 -3.44848 | overlap 567620 AGGGAAAGATCGTAT CGCGCCAGCCAATATTA TTGA TAATGATGGCTTGCGTG TGTTTGATCCAGAAG TERM 741 568043 - 568022 - g 74 -3.7 -5.05153 | ACCTGAAAAAACAAA CTTGCAAAA AGAC CTTAGCAAG TTAAGCATTGCTTCT TERM 742 568613 - 568633 + G 70 -9.7 -2.66316 | opp_overlap 568618, overlap 568610 568618 CACTTTTAAATCTGA GCAAAGACG TCA CGTCTTGGC TAATATGCTAGCACA M28_Spy0549 566400 - 569132 + | endonuclease/exonuclease/phosphatase family protein M28_Spy0550 569410 - 569910 + | hypothetical protein TERM 743 569930 - 569951 + F 82 -4.3 -5.57729 | opp_overlap 569930, overlap 569935 GCATCATACTCAAAA GAGTTGGGT CAAT ACCCTTCTC TTTTTTATGTTGTTT ligA 570104 - 572062 + | NAD-dependent DNA ligase LigA M28_Spy0552 572076 - 573098 + | putative lipid kinase TERM 744 573216 - 573238 + F 77 -4.8 -5.20216 | TCAATTTATTCATAT GAGGGGCC CATTTGA GGTCTCTC TTTTTTGATCATATG atpE 573490 - 573687 + | F0F1 ATP synthase subunit C TERM 745 574058 - 574068 + G 73 -6.8 -4.21098 | opp_overlap 574058, overlap 574051 TGGACCTCGCCAACA GCCA ATC TGGC TTTTGACCTTGCTCT atpB 573722 - 574438 + | F0F1 ATP synthase subunit A atpF 574456 - 574950 + | F0F1 ATP synthase subunit B atpH 574950 - 575486 + | F0F1 ATP synthase subunit delta atpA 575502 - 577010 + | F0F1 ATP synthase subunit alpha TERM 746 577497 - 577521 + G 72 -4.4 -4.77759 | gap 1, opp_overlap 577497 577498 CAAATCATTTCACAA TC-CGTTGACA TGTT TGTCAATGAGA TTTTTGATGAGTTAT atpG 577026 - 577901 + | F0F1 ATP synthase subunit gamma TERM 747 577924 - 577906 - f 76 -2.5 -5.58179 | gap 1, opp_overlap 577908, overlap 577909 CACTAGAATAAAAAA TAA-CGCT GACT AGCGATTA GGTTATTGTCAGCAT TERM 748 577920 - 577909 - f 81 -5.8 -4.84921 | opp_overlap 577908, overlap 577906 TAGAATAAAAAATAA CGCT GACT AGCG ATTAGGTTATTGTCA TERM 749 578875 - 578893 + G 72 -10.4 -2.52834 | overlap 578874 CCGTATGCCTTCTGC TGTTGGTT ACC AACCAACA CTTGCTACTGAAATG atpD 578063 - 579469 + | F0F1 ATP synthase subunit beta atpC 579482 - 579898 + | F0F1 ATP synthase subunit epsilon M28_Spy0561 580164 - 580421 + | hypothetical protein TERM 750 580621 - 580607 - g 70 -2.8 -5.0925 | opp_overlap 580584 580607 CTTCAAAAGGAAAAA CAATTC TTA GAAATG TTCCTATTCTATCTG murA 580486 - 581757 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase epuA 581761 - 581949 + | EpuA TERM 751 581960 - 581946 - f 82 -10 -3.62864 | opp_overlap 581941 581946 TAAATTTACTGGAAA GTAGGC CTT GCCTAC TTTTTATAGCATTTG TERM 752 581946 - 581960 + F 100 -10 -4.89393 | opp_overlap 581946, overlap 581941 TAAATTTACTGGAAA GTAGGC CTT GCCTAC TTTTTATAGCATTTG M28_Spy0564 581973 - 582563 + | DNA-entry nuclease endA 582547 - 582849 + | DNA-entry nuclease TERM 753 583062 - 583102 + F 100 -13.3 -5.1675 | AAAACGGATGGTACC GCGTGTCAACGCTCCGCTT ATG AAGTGGAGTAGTGGCACGC TTTTTTCATCGCTAA TERM 754 583190 - 583172 - g 95 -6 -5.67529 | opp_overlap 583172 583174, overlap 583174 AATTAAAAACAAAAA CATTGGAG ACT CTCCAATC TTTGACGGGGAATCA TERM 755 583174 - 583188 + G 70 -8.6 -3.34517 | opp_overlap 583172 583174, overlap 583172 TTAAAAACAAAAACA TTGGAG ACT CTCCAA TCTTTGACGGGGAAT TERM 756 583188 - 583174 - g 85 -8.6 -4.43511 | opp_overlap 583174 583172, overlap 583172 TTAAAAACAAAAACA TTGGAG ACT CTCCAA TCTTTGACGGGGAAT pheS 583132 - 584175 + | phenylalanyl-tRNA synthetase subunit alpha TERM 757 584338 - 584365 + F 76 -9.8 -2.91144 | opp_overlap 584337 584331 584328 584340, overlap 584337 GGAAATGACTCAAAT CACGGCTTGAGA GCTT TCTCTAGCCGAG TGATTTGGGCACTAA TERM 758 584363 - 584340 - f 83 -11 -2.96232 | opp_overlap 584338 584337, overlap 584337 584331 584328 AAATGACTCAAATCA CGGCTTGAGA GCTT TCTCTAGCCG AGTGATTTGGGCACT TERM 759 586261 - 586273 + G 74 -6.3 -4.41616 | opp_overlap 586261 586260 TTTACCATGCTAAAG GTATC TTG GATAC TTTATTTGCAAACCT pheT 584370 - 586790 + | phenylalanyl-tRNA synthetase subunit beta TERM 760 586817 - 586799 - f 91 -4.4 -5.80364 | opp_overlap 586799 586801 586803, overlap 586801 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 761 586799 - 586817 + F 95 -6.6 -5.84432 | opp_overlap 586799 586801, overlap 586801 586803 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 762 586857 - 586846 - f 79 -4.4 -5.27399 | TAATAGAGGAAAAAA GAAC TCCA GTTC AAATGATTGGAGAAA TERM 763 586934 - 586916 - g 75 -2.5 -5.33405 | gap 1 TGTATCAAACAAAAA TAACAGGC AACC GCCT-TTA CCACACGGTTTCGAA TERM 764 587077 - 587095 + G 85 -8.9 -4.19624 | TACCATCGTCAATTT CAGCAAG ACACA CTTGCTG TTTCTGTTGAGGCTA M28_Spy0568 586864 - 587277 + | salt-stress induced protein M28_Spy0569 587270 - 587656 + | hypothetical protein M28_Spy0570 587729 - 588805 + | ABC transporter permease protein TERM 765 589405 - 589390 - g 72 -3.2 -5.01858 | overlap 589392 TAAAGAAAAAAACAA GGCCAT TATT ATGGTC ACTCATGATGATCGG M28_Spy0571 588812 - 589483 + | ABC transporter ATP-binding protein TERM 766 589545 - 589521 - T 100 -10.1 -5.89921 | opp_overlap 589521 ATTAGAAGAAAAAAA CCAAACAAGCA CAG CACTTGTTTGG TTTTTTTCTAAGTGT TERM 767 589521 - 589545 + T 95 -8.7 -5.65177 | opp_overlap 589521 ATTAGAAGAAAAAAA CCAAACAAG CACAGCA CTTGTTTGG TTTTTTTCTAAGTGT M28_Spy0572 590505 - 589588 - | neutral zinc metallopeptidase family protein TERM 768 590790 - 590763 - gH 77 -8.6 -3.55071 | opp_overlap 590762 CTATATTGCTCCAAA TTCTCTTTCATT TGAA AAGGAAAGAGAA GTCTTAACCTTATTG TERM 769 591208 - 591236 + GH 80 -6.1 -4.7657 | opp_overlap 591208 591211 CTTTTAAATAACCAA CTATCAAAAACAG TTA TTGTTATTGATGG TTTTTCACGTTTTTC rexB 590656 - 593871 + | ATP-dependent nuclease subunit B TERM 770 595334 - 595344 + GF 81 -6.8 -4.77157 | AGAGGTGTTAAATGT CAGC AAT GCTG TTTTTAGTCACTTAA rexA 593832 - 597500 + | ATP-dependent nuclease subunit A M28_Spy0575 597616 - 598452 + | arginine-binding protein rpsU 598593 - 598769 + | 30S ribosomal protein S21 TERM 771 598786 - 598806 + T 100 -6.9 -5.8096 | opp_overlap 598786 GGTAAAAAATAAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 772 598806 - 598786 - T 93 -6.9 -5.75538 | opp_overlap 598786 GGTAAAAAATAAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 773 598880 - 598859 - T 88 -5.9 -5.58454 | opp_overlap 598859 598862, overlap 598838 TTGATATCAAAAAAA GCAGTTAGA CATG CCTAACTAC TTTATCAAAAATCGC mscL 599259 - 598897 - | large-conductance mechanosensitive channel TERM 774 598949 - 598962 + g 95 -4.5 -5.75538 | AATTCTTCTTGAGTA GGAGC TGCA GCTTC TTTTTCTTTTTTAGG dnaG 599389 - 601203 + | DNA primase rpoD 601212 - 602321 + | RNA polymerase sigma factor RpoD TERM 775 602314 - 602348 + F 89 -10.8 -3.53031 | opp_overlap 602315 602318 602324, overlap 602315 602317 602324 TAAGAGACTTTATAG AGGACTAAAATCGTCC AGT GGACGATTTTAGGTCG TTCCTTTGAAATAAG TERM 776 602347 - 602315 - f 84 -12.1 -2.91507 | opp_overlap 602314 602315 602317 602324, overlap 602318 602324 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 777 602315 - 602347 + F 93 -14.3 -2.71497 | opp_overlap 602315 602318 602324, overlap 602314 602317 602324 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 778 602317 - 602345 + F 87 -13.3 -2.89837 | opp_overlap 602315 602318 602324, overlap 602315 602314 602324 GAGACTTTATAGAGG ACTAAAATCGTCC AGT GGACGATTTTAGG TCGTTCCTTTGAAAT TERM 779 602344 - 602318 - f 100 -16.8 -2.69977 | opp_overlap 602317 602315 602314 602324, overlap 602315 602324 AGACTTTATAGAGGA CTAAAATCGTCC AGT GGACGATTTTAG GTCGTTCCTTTGAAA TERM 780 602338 - 602324 - f 100 -10 -4.34345 | opp_overlap 602317 602315 602314 602324, overlap 602318 602315 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 781 602324 - 602338 + F 93 -10 -4.24294 | opp_overlap 602324 602318 602315, overlap 602317 602315 602314 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 782 602481 - 602471 - f 79 -8.2 -3.95378 | opp_overlap 602470 TGATATCTTAAACAA GCCC AGA GGGC AATTCCTCTAAATAG TERM 783 602596 - 602621 + G 72 -8.5 -3.57883 | gap 1, opp_overlap 602604 CAAGATCAGGTGATA GCTATCAAGAAT AGA ATTCTTGA-AGC TTTAGAAACTGTTAT M28_Spy0580 602557 - 602895 + | putative cytoplasmic protein rmlD 602973 - 603887 + | dTDP-4-dehydrorhamnose reductase TERM 784 603900 - 603923 + F 100 -11.8 -4.78764 | opp_overlap 603900 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 785 603923 - 603900 - f 100 -9.6 -4.64598 | opp_overlap 603900 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 786 605038 - 605014 - g 70 -3.5 -4.8622 | opp_overlap 605029 TGGTCCAAGCAAAAA GGGCAATTAGC AGA GCTGATTAACC AAGTTGATGCAGGTT rgpAc 604006 - 605160 + | alpha-(1,2)-rhamnosyltransferase rgpBc 605150 - 606082 + | alpha-L-Rha alpha-1,3-L-rhamnosyltransferase rgpCc 606085 - 606888 + | polysaccharide export ABC transporter permease protein TERM 787 607677 - 607663 - g 70 -2.8 -5.055 | TGAATGCTGAAAAAA TATCTG TAT CTGATA TTGCCAAAGATTTGA rgpDc 606888 - 608093 + | polysaccharide export ATP-binding protein rgpEc 608118 - 609125 + | glycosyltransferase TERM 788 610483 - 610473 - g 74 -4 -5.05153 | ATGTTAAAAAACAAA TTGA TTT TCAA GCTATGGATACATTT rgpFc 609122 - 610867 + | alpha-L-Rha alpha-1,2-L-rhamnosyltransferase TERM 789 611008 - 611020 + G 74 -4.9 -4.77775 | GTAAACTATTATGCT CATTT ACT AAATG TTTCTTTTGTGGGAT M28_Spy0588 610864 - 613338 + | phosphoglycerol transferase TERM 790 613991 - 614007 + G 76 -6.6 -4.33105 | opp_overlap 613990 CTAAGGTTAATTGAC CGTTCA TTGAT TGAACG TTTTGCTAATCATTA M28_Spy0589 613517 - 614212 + | glycosyltransferase involved in cell wall biogenesis M28_Spy0590 614214 - 614555 + | hypothetical protein amrA 614548 - 615834 + | transcriptional activator M28_Spy0592 615815 - 617311 + | hypothetical protein TERM 791 617363 - 617325 - f 79 -10.6 -2.91467 | opp_overlap 617325 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT TERM 792 617325 - 617363 + F 100 -10.6 -4.5265 | opp_overlap 617325 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT pepT 617393 - 618628 + | peptidase T ebsA 618669 - 619157 + | pore forming protein TERM 793 619161 - 619140 - T 85 -6.6 -5.32882 | opp_overlap 619140 CAGCATGATAAAAAA GCCCTTAC TCGAGG GTAAGAGC TTTAGTTGGGCAAGA M28_Spy0595 619341 - 619144 - | ferredoxin M28_Spy0596 619390 - 619866 + | hypothetical protein TERM 794 619967 - 619935 - g 70 -9.3 -3.18433 | opp_overlap 619933 619936 619938, overlap 619933 619938 AGTGGAAAAAGTACA GTAGCCAAGATTATT GCA AAAAATCTTGGCTAT ACTTATCTAGATACT TERM 795 619936 - 619966 + G 83 -12.8 -2.89793 | opp_overlap 619935 619933 619938, overlap 619933 619938 GTGGAAAAAGTACAG TAGCCAAGATTATT GCA AAAAATCTTGGCTA TACTTATCTAGATAC TERM 796 619964 - 619938 - g 77 -11 -2.78025 | opp_overlap 619936 619933 619938, overlap 619935 619933 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT TERM 797 619938 - 619964 + G 78 -11 -2.99717 | opp_overlap 619938 619935 619933, overlap 619936 619933 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT cmk 619881 - 620561 + | cytidylate kinase TERM 798 620666 - 620699 + F 81 -5.9 -4.96848 | overlap 620634 620630 620671 TCCTATGGAATATTA TGTGTGCGGGCTTGA TTTA TCAAGTCCGCTTTCG TTTTTCTCTAAAAAA TERM 799 620671 - 620694 + F 100 -13.2 -4.40526 | overlap 620634 620630 620666 TGGAATATTATGTGT GCGGGCTTGA TTTA TCAAGTCCGC TTTCGTTTTTCTCTA infC 620723 - 621253 + | translation initiation factor IF-3 rpmI 621295 - 621492 + | 50S ribosomal protein L35 rplT 621551 - 621910 + | 50S ribosomal protein L20 TERM 800 621957 - 621931 - T 100 -9.7 -5.1287 | opp_overlap 621934 GCTATACCTAAAAAA TAACTTTCTAT TACCT ATAGAAAGTTA TAAAGAAACAAAAAT TERM 801 621976 - 621994 + T 85 -6.7 -5.22006 | opp_overlap 621976 621979 621984, overlap 621984 621991 AGAAACAAAAATGAA GGAGACG ATGGA CGTCTTC TTTTTATTATACTCA TERM 802 621991 - 622025 + T 79 -8.9 -3.7229 | opp_overlap 621976 621984, overlap 621976 621984 GGAGACGATGGACGT CTTCTTTTTATTATA CTCAA TATAATAAAAAGCAG TTTCCCATGTTTTAT TERM 803 622180 - 622157 - T 100 -11.2 -5.45652 | opp_overlap 622160 ATCGCCAATAAAAAA GAAGCAAAAT TATT ATTTTGCTTC TAGTCAGATCATTAA M28_Spy0601 624417 - 622201 - | phosphoglycerol transferase TERM 804 622359 - 622374 + g 71 -6.2 -4.23486 | overlap 622372 CTGATCCGAGTTTTG CTGAAA TATC TTTCAG TTGTTTTAACTGCTT TERM 805 624633 - 624617 - g 100 -5.1 -5.75822 | overlap 624618 TATAAAGGAAAAAAA TCAGTTG GTT CAACTGG TGACCAAGTCCAATC TERM 806 624632 - 624618 - g 79 -8.6 -4.03053 | overlap 624617 ATAAAGGAAAAAAAT CAGTTG GTT CAACTG GTGACCAAGTCCAAT M28_Spy0602 624519 - 625682 + | methyltransferase aroD 625679 - 626365 + | 3-dehydroquinate dehydratase TERM 807 627336 - 627325 - g 70 -5.8 -4.41348 | opp_overlap 627325 627324 TGGTCGTCAAACAAA CCAC TTAG GTGG CTTTGAAGGTGGCAT aroF 626459 - 627625 + | chorismate synthase M28_Spy0605 627686 - 628027 + | hypothetical protein M28_Spy0606 628156 - 628016 - | hypothetical protein TERM 808 628051 - 628078 + g 76 -3.5 -5.34055 | gap 1 AGATAGGAAAAAAAA CAGATTGCTGGC AGCTC GTCAG-GATCTG TTTTTTAGTGTTTAT TERM 809 628664 - 628678 + G 73 -5.7 -4.62302 | ATATTTTGATTGCCA CAGGA GGACA TCCTG TTTTTCCAGATATTG gor 628249 - 629601 + | glutathione reductase TERM 810 629628 - 629673 + T 83 -4.9 -5.4833 | gap 1, opp_overlap 629629, overlap 629629 TAAGGCAATAAAAAA TGATGTTAACAGTTTTTGAGGA AAG TCTTCTA-AACTGCTAGCATCG TTTTTTGTTAGGTGA folC.2 630981 - 629689 - | dihydrofolate synthase M28_Spy0609 631448 - 630987 - | hypothetical protein TERM 811 631381 - 631397 + g 70 -2.9 -5.06414 | overlap 631369 TGCTCGGTAGGGACA CCTCCTG ATT TACGAGG TTTTTGTTGACGGGA TERM 812 631781 - 631791 + G 71 -6.8 -4.11484 | opp_overlap 631781 CCAATTAGGGACAAA TGCG TCT CGCA TTTTAGAAGCTTCCC nifS1 631662 - 632804 + | cysteine desulfhydrase thiI 632816 - 634030 + | thiamine biosynthesis protein ThiI TERM 813 634084 - 634097 + G 72 -3.1 -5.15634 | gap 1, opp_overlap 634084 634085, overlap 634086 TGATACTATTGAAAA GCCTCT ATA AG-GGC TTTTTTGCTGCAATG TERM 814 634288 - 634274 - g 87 -5 -5.40072 | overlap 634277 TGGGGTTCAAAAAAA TAAGCT AGC AGCTCA AAAATCTGCTCAGCC TERM 815 634845 - 634830 - g 71 -4 -4.94703 | overlap 634831 AAGATAAAAAAAGAA CTTCAG CTAG CTGAAA AAAAGGCTGACGTGA capA 634068 - 635360 + | capsule biosynthesis protein TERM 816 635475 - 635461 - f 79 -8.6 -3.74747 | GTAACGTTGACTAAA TGCACA TCC TGTGCA ACCGCGCGAAAATCG rplU 635574 - 635888 + | 50S ribosomal protein L21 M28_Spy0614 635900 - 636226 + | hypothetical protein rpmA 636254 - 636547 + | 50S ribosomal protein L27 TERM 817 636569 - 636596 + F 100 -8.4 -6.11229 | opp_overlap 636571, overlap 636570 636571 AACATCGCATTATAT AAGGCTTTCCAG GTGT CTGGAAAGCCGA TTTTTTTATTTTGGT TERM 818 636570 - 636595 + F 100 -11.9 -4.23077 | opp_overlap 636571, overlap 636569 636571 ACATCGCATTATATA AGGCTTTCCAG GTGT CTGGAAAGCCG ATTTTTTTATTTTGG TERM 819 636571 - 636594 + F 100 -15.4 -3.11406 | opp_overlap 636571, overlap 636570 636569 CATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 820 636594 - 636571 - f 100 -15.4 -3.54951 | opp_overlap 636571 636570 636569 CATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 821 637077 - 637091 + G 78 -4.2 -5.24129 | opp_overlap 637070 637068, overlap 637070 CAGGAACAGTCTTGA CAAGTC AAG GACTAG TTTTTTATGAGAAAG M28_Spy0616 636905 - 637819 + | LysR family transcriptional regulator TERM 822 637986 - 638001 + G 70 -5.4 -4.35483 | overlap 637981 637979 CTTTTCCATATTGCA GGACCA GCAA TGGTTC TTTGTTGTCATAACG lsp 637816 - 638274 + | lipoprotein signal peptidase M28_Spy0618 638264 - 639154 + | ribosomal large subunit pseudouridine synthase D TERM 823 639493 - 639516 + F 90 -8.2 -5.34381 | overlap 639495 TGCTATATTTTGCTG AATCTCCTTG TTTC CAAGGAGATC TTTTTATTTGAATTT TERM 824 639495 - 639514 + F 100 -10.8 -4.2793 | overlap 639493 CTATATTTTGCTGAA TCTCCTTG TTTC CAAGGAGA TCTTTTTATTTGAAT TERM 825 639803 - 639767 - g 77 -11 -2.87881 | opp_overlap 639775 639777, overlap 639772 CAAGCCTTTTAGAGA TGACATGAGAGTTGAG GAAGA CACAACTCTGATGTCA GTAGATATTACAGGC pyrR 639549 - 640070 + | pyrimidine regulatory protein PyrR pyrP 640086 - 641345 + | uracil permease pyrB 641352 - 642341 + | aspartate carbamoyltransferase catalytic subunit TERM 826 643187 - 643175 - gf 78 -7.7 -4.14472 | opp_overlap 643184 CCAAGACTTGTAAAA TGACC TTT GGTCA TCGTGGCTTTAACCA carA 642385 - 643467 + | carbamoyl phosphate synthase small subunit M28_Spy0623 643439 - 643636 + | hypothetical protein TERM 827 643750 - 643764 + G 73 -7.8 -3.9461 | AAAAAATCATGGTTA TCGGGT CTG GCCCGA TTATTATTGGACAAG carB 643713 - 646889 + | carbamoyl phosphate synthase large subunit TERM 828 646901 - 646926 + F 100 -10.7 -5.55698 | opp_overlap 646901 646916 646918 ATAAAAATTAAAAAA TCATTTTTAAG AAAA CTTAAAAATGA TTTTTTTAGATTATA TERM 829 646926 - 646901 - f 100 -10.7 -5.56112 | opp_overlap 646901, overlap 646916 646918 ATAAAAATTAAAAAA TCATTTTTAAG AAAA CTTAAAAATGA TTTTTTTAGATTATA TERM 830 647647 - 647626 - g 72 -9.5 -2.974 | overlap 647623 GCAAGATTTAAATGA TGCTTATGC AGAT GCACAAGCA GAAGTAAATAAAGCG M28_Spy0625 647096 - 648367 + | periplasmic component of efflux system M28_Spy0626 648367 - 649077 + | ABC transporter ATP-binding protein M28_Spy0627 649089 - 650309 + | ABC transporter permease protein TERM 831 650489 - 650520 + F 73 -8.8 -3.29511 | overlap 650490 AGTGATACATCTCTT ATTTCTAGCTGAAC TTCG GTTCGGCTAGGAAG TTGTCAGGCAATGAG TERM 832 650490 - 650519 + F 86 -12.3 -2.57564 | overlap 650489 GTGATACATCTCTTA TTTCTAGCTGAAC TTCG GTTCGGCTAGGAA GTTGTCAGGCAATGA M28_Spy0628 650521 - 652296 + | glycerophosphoryl diester phosphodiesterase TERM 833 652344 - 652298 - f 100 -17 -3.73224 | opp_overlap 652287 652299 652306 652310, overlap 652299 652310 GTAGTCTTTATTAAA GGTTTAAAGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAACT GAGTTATACTGTTTA TERM 834 652299 - 652343 + F 100 -20.5 -2.63636 | opp_overlap 652298 652299 652310, overlap 652306 652310 TAGTCTTTATTAAAG GTTTAAAGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 835 652343 - 652299 - f 100 -20.5 -2.8372 | opp_overlap 652299 652306 652310, overlap 652298 652310 TAGTCTTTATTAAAG GTTTAAAGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 836 652306 - 652336 + F 95 -12.8 -3.62418 | opp_overlap 652299 652298 652310, overlap 652299 652310 TATTAAAGGTTTAAA GAAAGTGTCAAG AAAAAAA CTTGACACTTTC TTTAAACTGAGTTAT TERM 837 652310 - 652332 + F 81 -7.8 -4.44046 | opp_overlap 652299 652298 652310, overlap 652306 652299 AAAGGTTTAAAGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG TERM 838 652332 - 652310 - f 81 -7.8 -4.4448 | opp_overlap 652310 652306 652299, overlap 652299 652298 AAAGGTTTAAAGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG rpsP 652423 - 652695 + | 30S ribosomal protein S16 M28_Spy0630 652705 - 652944 + | RNA binding protein TERM 839 652970 - 652994 + G 100 -15.9 -4.65895 | opp_overlap 652970 652990 652993, overlap 652993 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAAA TERM 840 652994 - 652970 - g 100 -15.9 -4.20531 | opp_overlap 652970 652993, overlap 652990 652993 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAAA M28_Spy0631 652953 - 653060 + | hypothetical protein TERM 841 653260 - 653295 + F 100 -18 -4.40333 | opp_overlap 653271, overlap 653250 CAGTTTTTTGGGGGA CATTCCTAAAATTAAG TATA CTTAATTTTAGGAATG TTTATATTCTTTACA TERM 842 653429 - 653419 - f 73 -4 -5.20216 | opp_overlap 653419 TATACGATCAAAAAA GTTA GAG TAAC TTTATAAAACAGTGG TERM 843 653536 - 653494 - f 80 -5 -5.28778 | opp_overlap 653525, overlap 653525 ATTATCTATAAAAAA TCCCAAAAGTAGTTTGTT TCCAGTT AATGAACTTCTTTTGGGA AGGCTTTTTTGCTGA M28_Spy0632 653876 - 656902 + | cell surface protein M28_Spy0633 656922 - 657323 + | putative cytoplasmic protein TERM 844 657435 - 657381 - T 100 -16.8 -5.12707 | opp_overlap 657384 657432 TTAAATGCTAAAAAA CAAGCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGCTTA TTAGGTGCTCTTAAT TERM 845 657384 - 657432 + T 100 -22.9 -3.70511 | opp_overlap 657381 AATGCTAAAAAACAA GCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGC TTATTAGGTGCTCTT czcD 658388 - 657513 - | cobalt-zinc-cadmium resistance protein M28_Spy0635 658515 - 659045 + | TetR family transcriptional regulator rimM 659260 - 659778 + | 16S rRNA-processing protein TERM 846 659918 - 659897 - g 91 -9.5 -4.60487 | GATTATGCTGAAAAA GCTCGTCAT GTGG ATGACGAAC CCTATGGTGGGGGCC TERM 847 660056 - 660077 + G 93 -6.7 -5.40464 | opp_overlap 660056, overlap 660047 GCTTATGCTGAAGAA TTAGCTCTT GAGG AAGAGTTAA TTTTTATTTGTGGTC trmD 659768 - 660499 + | tRNA (guanine-N(1)-)-methyltransferase TERM 848 660770 - 660794 + G 72 -4.3 -4.74103 | opp_overlap 660769 660767 660773, overlap 660771 660773 TAAAAGAAGAAGTAT TAACCTTTGAC AAG GTTAAAGGTGG TTTTTCGATTAGGAC trxB 660499 - 661491 + | thioredoxin reductase TERM 849 662273 - 662295 + G 76 -9.2 -3.76641 | CTTATCATTGTTAGT CCGATTTCAA CTG TTGCAATCGG TTTAGCTATTGGGCT M28_Spy0639 661670 - 662728 + | regulatory protein apbA 662741 - 663664 + | 2-dehydropantoate 2-reductase TERM 850 663684 - 663715 + F 100 -9.6 -5.58179 | TATCAAATCGTTATA CTCAATATTATGGC TAAA GCTTTAATATTGAG TTTTTTGTTATGCTG fruR 663920 - 664633 + | fructose repressor fruB 664630 - 665541 + | 1-phosphofructokinase fruA 665538 - 667484 + | PTS system, fructose-specific IIABC component TERM 851 667513 - 667534 + F 90 -8.1 -5.23316 | opp_overlap 667513 TTTTTCTTACTAAAA CTAGAATCT GTCA AGGTTCTAG TTTTTTGCTATACTA mur1.1 667577 - 668176 + | autolysin mur1.2 668328 - 669035 + | autolysin TERM 852 669101 - 669133 + T 100 -19.5 -4.74084 | opp_overlap 669101 669126 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT TERM 853 669133 - 669101 - T 100 -19.5 -3.91911 | opp_overlap 669101, overlap 669126 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT TERM 854 669527 - 669489 - T 73 -4.6 -4.98522 | AATGCCAGACAAAAA CACCCCAATTATTAGA TTTTTTG TCTAACTTTTGGGGCG CAATTCAATCTGAGC M28_Spy0647 669632 - 669513 - | hypothetical protein M28_Spy0648 669816 - 669607 - | exotoxin type J fragment TERM 855 669804 - 669822 + g 72 -3.2 -5.093 | overlap 669792 669805 TAGTCAAATGAATTT CTTTTGAT TCC ATCAAAAA TTTTCTTATTTTAAA mac 671017 - 669992 - | IgG-degrading protease TERM 856 670291 - 670319 + g 100 -6.1 -5.95539 | CTTCGGTTAACTCTT TCTTAATGAGATC ACT GATTTCTTTGAGA TTTTTTTCTTTAAAA TERM 857 671318 - 671299 - H 100 -6.4 -6.5058 | opp_overlap 671298 ACAAATAAAAAAAAA GACCTCAT CCAG AAGAGGTC GTGGTATAACTGGGG M28_Spy0650 671521 - 671697 + | nucleoside diphosphate kinase TERM 858 671735 - 671746 + F 78 -2.2 -5.59357 | GGTGCAGTACAAGAC CACT AACG GGTG TTTTTTTGATATAAT M28_Spy0651 671925 - 672305 + | transposase M28_Spy0652 672305 - 673153 + | degV family protein TERM 859 673256 - 673217 - f 90 -11.6 -3.54721 | opp_overlap 673222, overlap 673218 CAAAATGTGATAGAA CCCAAGTAGCCTAATC ACACTTTA GATTGGGCTACTTGGA TGATAGGTTAGAAAA TERM 860 673255 - 673218 - f 87 -12.9 -2.72109 | opp_overlap 673222, overlap 673217 AAAATGTGATAGAAC CCAAGTAGCCTAATC ACACTTTA GATTGGGCTACTTGG ATGATAGGTTAGAAA TERM 861 673222 - 673251 + F 71 -8.7 -3.10641 | opp_overlap 673218 673217 TGTGATAGAACCCAA GTAGCCTAATC ACACTTTA GATTGGGCTAC TTGGATGATAGGTTA TERM 862 673319 - 673291 - g 77 -11.1 -2.91027 | opp_overlap 673295, overlap 673284 673294 673295 GTATGAAATTAATGA CAATGCCTTCTGA GTT TCAGAAGGCTTTA CCCATATTGACTAAA TERM 863 673316 - 673294 - g 82 -10.6 -3.58914 | opp_overlap 673295, overlap 673291 673284 673295 TGAAATTAATGACAA TGCCTTCTGA GTT TCAGAAGGCT TTACCCATATTGACT TERM 864 673315 - 673295 - g 93 -14.1 -2.74625 | opp_overlap 673295, overlap 673294 673291 673284 GAAATTAATGACAAT GCCTTCTGA GTT TCAGAAGGC TTTACCCATATTGAC TERM 865 673295 - 673315 + G 100 -14.1 -3.6106 | opp_overlap 673295 673294 673291 673284 GAAATTAATGACAAT GCCTTCTGA GTT TCAGAAGGC TTTACCCATATTGAC papS 673278 - 674486 + | tRNA CCA-pyrophosphorylase M28_Spy0654 674483 - 676360 + | ABC transporter ATP-binding protein uup TERM 866 676424 - 676413 - f 74 -5.8 -4.46621 | overlap 676415 GATAATAGAAAAGAA GTGC TCTT GCAC TGAGCCCCAAAAGTT TERM 867 676455 - 676499 + F 73 -3.7 -5.13722 | overlap 676453 676456 676461 GGCTACTCTATTTGA AGTAAAGGATTTAGTTCTGTA TTG TAGAGGATTAAGTCCTTTTCG TTTTATTTTGATACG TERM 868 676461 - 676493 + F 77 -5.7 -4.83677 | overlap 676453 676456 676455 TCTATTTGAAGTAAA GGATTTAGTTCTGTA TTG TAGAGGATTAAGTCC TTTTCGTTTTATTTT TERM 869 676605 - 676620 + F 77 -3.3 -5.55695 | AGAACTCGTCTTTGT CCATT CTTTAT AATGG TTTTTTGTCTTCTTC TERM 870 676659 - 676672 + G 76 -2.3 -5.42259 | opp_overlap 676659 GATGCTTCTTTCAAA CGGAG TTCC CTCGG TTTTTTTAGCGCTAA TERM 871 676724 - 676769 + G 100 -16.4 -3.80625 | opp_overlap 676727, overlap 676727 676729 CTTAATGTCATACAA AAACACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTGTAG TTTACATTATGGCGC TERM 872 676766 - 676727 - g 100 -22.5 -4.98522 | opp_overlap 676724 676727 676729 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 873 676727 - 676766 + G 100 -22.5 -2.98778 | opp_overlap 676727, overlap 676724 676729 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 874 676729 - 676764 + G 100 -19.3 -3.04183 | opp_overlap 676727, overlap 676727 676724 TGTCATACAAAAACA CCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGG TGTAGTTTACATTAT M28_Spy0655 676617 - 676769 + | hypothetical protein M28_Spy0656 676778 - 676996 + | hypothetical protein fms 677252 - 677662 + | peptide deformylase TERM 875 677670 - 677690 + T 84 -4 -5.75342 | opp_overlap 677670 TAATTTAACAAAAAA CCTAGAGT AGGAC GCTTTAGG TTTTTTTTGGCAAAG TERM 876 677680 - 677670 - T 84 -5.4 -5.5074 | opp_overlap 677670 TAATTTAACAAAAAA CCTA GAG TAGG ACGCTTTAGGTTTTT M28_Spy0658 679796 - 677745 - | 5'-nucleotidase TERM 877 678221 - 678207 - G 71 -5 -4.59944 | opp_overlap 678211, overlap 678208 678209 ACCACCATAAAGAAA GTCGTT GAC AACAAC GGTGTAAGTAGTTGT TERM 878 679895 - 679876 - H 77 -5.8 -4.69027 | opp_overlap 679880, overlap 679880 AAAGCGATTTAAAAA CAAACGAT AAAG ATCGTTTA CAGTTATATAGTTAG TERM 879 679891 - 679880 - H 73 -4.4 -4.89063 | opp_overlap 679880, overlap 679876 CGATTTAAAAACAAA CGAT AAAG ATCG TTTACAGTTATATAG M28_Spy0659 679977 - 680627 + | GTP pyrophosphokinase TERM 880 680687 - 680657 - g 85 -11.2 -3.37245 | opp_overlap 680685 TTAGCTGAAGACGAA TGGCAGATGTCTAA TGT TTTGACAACTGCCA TGACTCATCAAGGTT M28_Spy0660 680630 - 681298 + | two-component response regulator TERM 881 681470 - 681460 - g 70 -5.4 -4.41616 | ATTTCCTCAAATAAA GGTA AAT TACC TGGCACTACGGAAAG M28_Spy0661 681280 - 682539 + | two component system histidine kinase TERM 882 682606 - 682622 + F 89 -9.4 -4.25676 | opp_overlap 682609 ATAAATGATGCTTAA CCAGCC CATGA GGCTGG TTTTAACGTTTAATT mvaK1 682832 - 683710 + | mevalonate kinase mvaD 683692 - 684636 + | diphosphomevalonate decarboxylase mvaK2 684581 - 685642 + | phosphomevalonate kinase M28_Spy0665 685539 - 686618 + | isopentenyl pyrophosphate isomerase TERM 883 686828 - 686785 - T 100 -11.3 -4.63044 | gap 1, opp_overlap 686792, overlap 686792 ATGTATAGAAACAAA GATTAAACACCCATGTAAAC CAATT GTTTACATGGGTGTTTG-CC TTATATTAGTTGTTT TERM 884 686822 - 686792 - T 100 -17.1 -4.10269 | opp_overlap 686792, overlap 686785 GAAACAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG TERM 885 686792 - 686822 + T 100 -17.1 -3.85509 | opp_overlap 686792 686785 GAAACAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG M28_Spy0666 688125 - 686848 - | 3-hydroxy-3-methylglutaryl-coenzyme A reductase TERM 886 687370 - 687395 + g 90 -8.3 -5.05782 | overlap 687372 CCGGTAAGGATCTAC TTGAGCTAGTC GGCT GGCTAGCTCTA TTTTTTGAGCTAACT TERM 887 687372 - 687393 + g 90 -10.9 -4.15748 | overlap 687370 GGTAAGGATCTACTT GAGCTAGTC GGCT GGCTAGCTC TATTTTTTGAGCTAA TERM 888 687698 - 687712 + g 85 -2.8 -5.86976 | overlap 687696 GGATAAGCTTTATTT GCCAAT GCA ATTAGC TTTTTTGTTTTATGA TERM 889 688070 - 688082 + g 71 -4.1 -4.86731 | TCGATAAGTTGGAGG CGTTC TTC GAATG TTTTCTTTGAAAAAC mvaS.1 689326 - 688112 - | hydroxymethylglutaryl-CoA synthase TERM 890 688482 - 688510 + g 88 -8.3 -4.74453 | opp_overlap 688483 688486, overlap 688483 688486 ATTTGTTTGCTATAA GTAATAGAAGCTT GAA AGGCTTCTATTAG TTTTTCCCTGTGTTC TERM 891 688509 - 688483 - G 70 -9.6 -2.57132 | opp_overlap 688482 688483 688486, overlap 688486 TTTGTTTGCTATAAG TAATAGAAGCTT GAA AGGCTTCTATTA GTTTTTCCCTGTGTT TERM 892 688483 - 688509 + g 86 -11.8 -3.43587 | opp_overlap 688483 688486, overlap 688482 688486 TTTGTTTGCTATAAG TAATAGAAGCTT GAA AGGCTTCTATTA GTTTTTCCCTGTGTT TERM 893 688486 - 688506 + g 79 -9.1 -3.83644 | opp_overlap 688486 688483, overlap 688483 688482 GTTTGCTATAAGTAA TAGAAGCTT GAA AGGCTTCTA TTAGTTTTTCCCTGT thyA 689496 - 690335 + | thymidylate synthase dyr 690415 - 690912 + | dihydrofolate reductase M28_Spy0670 690932 - 691102 + | hypothetical protein TERM 894 691586 - 691564 - g 70 -5.7 -4.42386 | gap 1, opp_overlap 691549 TGTGGATTTACAAAA GTCCAA-CAT TTTG ATGATTGGAC CAACAGGTTCAGGAA TERM 895 691918 - 691890 - g 70 -9 -3.1706 | gap 2 AAGGTACGGTAGCAA GTG-TTCC-CCCAC AAG GTGGGCGGAAGCAC CCTAATCAAGAAATG clpX 691232 - 692461 + | ATP-dependent protease ATP-binding subunit M28_Spy0672 692471 - 693070 + | GTPase EngB TERM 896 693100 - 693117 + F 76 -4.1 -5.18726 | TTATCTATGCTAAAA CATTCTC AGTA GAGGGTG TTTTTCTTATCGAAA M28_Spy0673 693218 - 693961 + | hypothetical protein TERM 897 693946 - 693978 + T 74 -3.3 -5.36314 | opp_overlap 693946 AGCGCTAAAAAAAAG TCCGTCAAGTGTATA ACG TAGTCACAAGACGGA TTTTTTCATGTTTTG clpL 696118 - 694019 - | ATP-dependent protease ATP-binding subunit TERM 898 694054 - 694072 + g 78 -3.9 -5.1925 | gap 1, overlap 694049 TCACTAGTTGTCCTT CTTCTAGG ATTG CCT-GAAG TTTTTTGACTTCTGG TERM 899 696829 - 696812 - g 74 -4.2 -5.17576 | TACTAATGGAAAAAA TTGTTG CAACAC CAACAA AAGAATACATCTGGG rpiA 696496 - 697179 + | ribose-5-phosphate isomerase A TERM 900 697295 - 697330 + G 71 -7 -4.03141 | gap 1 TTGGTTGTTTTAGAC TCTGTCGGTAT-TGGTG CAG CACCAGATGCTGACAAA TTCTTTAATGCTGGT TERM 901 697472 - 697461 - g 72 -4.4 -4.8083 | CAATACCACTAAAAA CTGT TCCA ACAG AAGATAATCCTACTG deoB 697256 - 698467 + | phosphopentomutase arsC 698477 - 698923 + | arsenate reductase family protein punA 698907 - 699716 + | purine nucleoside phosphorylase deoD2 700244 - 701014 + | purine nucleoside phosphorylase TERM 902 701049 - 701023 - g 83 -8.9 -4.09805 | gap 1, opp_overlap 701022 701026 701028 701030, overlap 701026 701028 TGACTAATAATCAAA CACTAGACATCC TTTT GGATGTCTA-TG CTTATAATCACGCCT TERM 903 701047 - 701026 - g 81 -11.7 -2.77051 | opp_overlap 701026 701022 701028 701030, overlap 701023 701028 CTAATAATCAAACAC TAGACATCC TTTT GGATGTCTA TGCTTATAATCACGC TERM 904 701026 - 701047 + G 81 -11.7 -2.86271 | opp_overlap 701023 701026 701028, overlap 701022 701028 701030 CTAATAATCAAACAC TAGACATCC TTTT GGATGTCTA TGCTTATAATCACGC TERM 905 701045 - 701028 - g 71 -9.9 -2.91872 | opp_overlap 701028 701026 701022 701030, overlap 701026 701023 AATAATCAAACACTA GACATCC TTTT GGATGTC TATGCTTATAATCAC TERM 906 701028 - 701045 + G 72 -9.9 -2.98072 | opp_overlap 701026 701023 701028, overlap 701026 701022 701030 AATAATCAAACACTA GACATCC TTTT GGATGTC TATGCTTATAATCAC cpsX 701001 - 701795 + | transcription regulator LytR cpsY 702779 - 701874 - | LysR family transcriptional regulator M28_Spy0682 703001 - 703537 + | hypothetical protein TERM 907 703743 - 703766 + F 100 -12.4 -4.81685 | overlap 703740 TTTTAGTTTGCTGTA GCCTCGCTTC TTTG GTAGCGAGGC TTTTTGGTGCTTAAT TERM 908 703837 - 703873 + G 93 -9.6 -4.7153 | opp_overlap 703866, overlap 703864 AGAACGCCCAATTAT TGCTTTAGACTTTTCA TCATT TGAGGAGACTAAAGCA TTTTTAGACTTATTT pyrF 703814 - 704506 + | orotidine 5'-phosphate decarboxylase pyrE 704564 - 705193 + | orotate phosphoribosyltransferase amiC 705390 - 706844 + | amidase TERM 909 707092 - 707070 - g 75 -2.7 -5.34309 | gap 1 ACTATCAAAGAAAAA GGGGT-GTTA AAAG TAGCTACCCC AGGAACCTATCAGCC TERM 910 707422 - 707409 - g 84 -2.3 -5.72207 | TGGAAAGGAAAAAAA GCAGC TGGC GCTTC TGGAACAGAGTACAT TERM 911 707623 - 707611 - g 77 -7.7 -4.24404 | ATCTAAATGTCAAAA TGAGC GAT GCTCA GTACAACCCAACCGA TERM 912 707812 - 707794 - g 86 -2.4 -5.88197 | GCAAAGACAAAAAAA TTCCCATC ATT GATACGAA AGACGTTAACTAATA M28_Spy0686 706926 - 707825 + | cystine-binding protein M28_Spy0687 707854 - 708504 + | cystine transport system permease protein TERM 913 708527 - 708555 + F 100 -9.7 -4.33928 | opp_overlap 708525 708529, overlap 708529 TAAAAAACGAATATT AACCCTGGAAATA TCA TATTTTCAGGGTC TTTCTATTTAAAATG TERM 914 708529 - 708553 + F 95 -12.3 -3.76586 | opp_overlap 708525 708529, overlap 708527 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA TERM 915 708553 - 708529 - f 81 -10.1 -3.46844 | opp_overlap 708529 708527, overlap 708525 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA ung 708637 - 709290 + | uracil-DNA glycosylase TERM 916 709992 - 710003 + G 72 -4.4 -4.82678 | TTTTAATGAAGGTAT TGCT GAGG AGCA TTTTCATTTTTGTGG pyrC 709414 - 710682 + | dihydroorotase TERM 917 710704 - 710728 + T 100 -11.5 -4.33767 | opp_overlap 710704 AGTTAAAACAAAAAA GCTTGACTTTC AGA GGAAGTCAGGC TTTTAGTAAATTTAT TERM 918 710728 - 710704 - T 100 -7.1 -5.80951 | opp_overlap 710704 AGTTAAAACAAAAAA GCTTGACTTTC AGA GGAAGTCAGGC TTTTAGTAAATTTAT M28_Spy0690 711462 - 710740 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 919 711463 - 711444 - G 72 -3.6 -5.06103 | overlap 711447 AGAATTCGGAAAAAA TTAGCAAA TTAT TTTGCAAA ATTGGTAAAAAACTT TERM 920 712151 - 712133 - g 81 -7.5 -4.56597 | TTTTCTTTTGAAAAA TGTCAAG ATGAG CTTGACA GATCTTCGTGGAGAT TERM 921 712759 - 712743 - g 86 -2.3 -6.01725 | AAGAAAAACAAAAAA GACAA AGGCTTG TTGTC GGGAAAATTAACCCC parE 711513 - 713465 + | DNA topoisomerase IV subunit B parC 713550 - 716015 + | DNA topoisomerase IV subunit A TERM 922 716012 - 716037 + F 100 -10.7 -4.49344 | opp_overlap 716011 716019, overlap 716019 GGTAGCTAGAACACG TTAAAAAGAGT GAAA ACTCTTTTTAA TTTTATGGTAAATTT TERM 923 716030 - 716019 - f 70 -4.4 -4.67556 | opp_overlap 716019 716012, overlap 716011 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGG TERM 924 716019 - 716030 + F 76 -4.4 -5.1417 | opp_overlap 716011 716019, overlap 716012 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGG TERM 925 716285 - 716274 - g 71 -7.2 -3.91858 | opp_overlap 716274 TACATATCTCAGAAA GCGC TCCA GCGC TTCATTATGGGCAAC bcaT 716093 - 717160 + | branched-chain amino acid aminotransferase TERM 926 717167 - 717182 + F 95 -9 -5.50313 | opp_overlap 717165 717163 717167 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG TERM 927 717182 - 717167 - f 75 -9 -3.46858 | opp_overlap 717167, overlap 717165 717163 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG M28_Spy0694 717221 - 717454 + | putative cytoplasmic protein TERM 928 717482 - 717507 + F 71 -7.8 -3.61517 | ACACTTGCCAGCTTA CAAAAACTAT GATAGA ATAGTTTTTG TTGTTACGGAAAGAT TERM 929 717806 - 717821 + F 89 -9 -4.64334 | opp_overlap 717806 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT TERM 930 717821 - 717806 - f 85 -9 -4.26344 | opp_overlap 717806 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT rpsA 717844 - 719049 + | 30S ribosomal protein S1 TERM 931 719086 - 719055 - T 85 -11.8 -3.12069 | opp_overlap 719056 719062, overlap 719062 TGAATTGTAATAAAT CTAAAAAGTTGAGG TTTT CCTCAACTTTTTAT TGTCTTCTGGTTAGA TERM 932 719056 - 719085 + T 100 -15.3 -3.79995 | opp_overlap 719055 719062, overlap 719062 GAATTGTAATAAATC TAAAAAGTTGAGG TTTT CCTCAACTTTTTA TTGTCTTCTGGTTAG TERM 933 719062 - 719079 + T 100 -9.9 -5.31072 | opp_overlap 719055 719062, overlap 719056 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 934 719079 - 719062 - T 100 -9.9 -4.86939 | opp_overlap 719062 719056, overlap 719055 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 935 719267 - 719252 - T 76 -2.6 -5.43487 | gap 1, opp_overlap 719253 719254, overlap 719245 719253 719254 AAATCATATAAAAAA GCCCTAT TTG ATAGG-C TTTTTTTGTTTCTTT TERM 936 719253 - 719267 + T 91 -2.8 -6.11392 | opp_overlap 719252 719253 719245 719254, overlap 719254 AATCATATAAAAAAG CCCTAT TTG ATAGGC TTTTTTTGTTTCTTT TERM 937 719254 - 719266 + T 71 -6.3 -4.21345 | opp_overlap 719252 719253 719245 719254, overlap 719253 ATCATATAAAAAAGC CCTAT TTG ATAGG CTTTTTTTGTTTCTT TERM 938 719459 - 719469 + T 71 -5.4 -4.58663 | opp_overlap 719459 TAATTATTGATGAGA TGGT GAA ACCA TTTTTAGCAAGTGCT M28_Spy0696 719898 - 719596 - | hypothetical protein M28_Spy0697 720098 - 721084 + | hypothetical protein TERM 939 721095 - 721114 + F 89 -7.2 -5.31275 | opp_overlap 721095 CCTAATATCTCAAAA CAAATCAG GAAA CTGGTTTG TTTTTTGTGATACAG TERM 940 721160 - 721144 - f 75 -8.1 -3.86916 | GATGATGAGACCAAA TTGCAAA GAC TTTGCAA CAAGATACTAGTGAA M28_Spy0698 721155 - 721346 + | hypothetical protein M28_Spy0699 721395 - 721781 + | glutathione S-transferase TERM 941 722273 - 722286 + GT 76 -4.5 -5.06414 | opp_overlap 722267 CGGCATTAACAGCAC CTGCT AGTA GGCAG TTTTTATTAGGACAG M28_Spy0700 721648 - 722748 + | putative exfoliative toxin TERM 942 722842 - 722815 - T 71 -3.3 -5.20216 | opp_overlap 722815 GAGATTACTAAAAAA GAGGCCGGCAC TTTAAT GTGCTAGTCTC TTTTAAATTGATCCA TERM 943 722873 - 722892 + T 71 -3.4 -5.15117 | overlap 722887 TTGTCACGTTAGCGA GCTACACG ACGA CGCGCAGC TTTTTTGCGGTTTTC M28_Spy0701 723036 - 722866 - | hypothetical protein TERM 944 722899 - 722922 + g 76 -3.1 -5.29445 | overlap 722887 ACGCGCAGCTTTTTT GCGGTTTTC TTCAAT GAAAGCAGC TTTTTCTTCTTCAGG miaA 723170 - 724069 + | tRNA delta(2)-isopentenylpyrophosphate transferase hflX 724130 - 725380 + | GTP-binding protein M28_Spy0704 725361 - 726008 + | hypothetical protein elaC 726023 - 726952 + | ribonuclease Z M28_Spy0706 726952 - 727716 + | short chain dehydrogenase TERM 945 727769 - 727751 - g 85 -8.9 -4.17186 | opp_overlap 727751 727754, overlap 727746 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 946 727751 - 727769 + G 74 -8.9 -3.59979 | opp_overlap 727751 727746, overlap 727754 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 947 727805 - 727791 - g 80 -6.4 -4.82128 | CTAGCAAAGACAAAA GGTCTA ACC CAGACC GCCGCTCAGTTGATT recJ 727713 - 729923 + | single-stranded-DNA-specific exonuclease apt 730073 - 730591 + | adenine phosphoribosyltransferase dnaD 730672 - 731355 + | phage protein TERM 948 731739 - 731719 - g 73 -5.4 -4.56597 | opp_overlap 731707, overlap 731721 GTGTTGGCCGAAAAA CAGCCAAT GTGGT ATTGGCAG AGGTTTATGGTGTTC nth 731352 - 732008 + | endonuclease III TERM 949 731992 - 732020 + F 93 -7.5 -5.61596 | opp_overlap 731998 ATCAAAATACTTATG GAAAATCGAAAGC CTA GCCTTTGGTTTTC TTTTTTTATGGAGGT M28_Spy0711 732080 - 732766 + | anthranilate synthase component I TERM 950 733464 - 733454 - g 73 -6.8 -4.15066 | overlap 733461 733462 TACGGAGAAATTAAA GGAG AAA CTCC AAGGGTGGAAAGAAG M28_Spy0712 732750 - 733544 + | NIF3-related protein TERM 951 734418 - 734406 - g 70 -3.4 -4.83615 | CAGGTCTTAGAAAAA CTTG AAATG CAAG CTCTCACTTATTTGC M28_Spy0713 733584 - 734690 + | glycine/D-amino acid oxidase family protein cpsFO 734749 - 735618 + | glucose-1-phosphate thymidylyltransferase cpsFP 735618 - 736211 + | dTDP-4-dehydrorhamnose 3,5-epimerase cpsFQ 736455 - 737495 + | dTDP-glucose 4,6-dehydratase TERM 952 737549 - 737498 - f 100 -13.6 -4.9448 | gap 2, opp_overlap 737505, overlap 737505 AGTGATTAAATAAAA CATTAAAGAACCTTGTCATATCAA TTATCG TTGATATGACAAGGTTCTTT--TG ATAGTTTAAATTGAT TERM 953 737505 - 737544 + F 100 -20.4 -4.39386 | opp_overlap 737505 737498 AAATAAAACATTAAA GAACCTTGTCATATCAAT TATC GTTGATATGACAAGGTTC TTTTGATAGTTTAAA TERM 954 737544 - 737505 - f 100 -19.7 -4.14724 | opp_overlap 737505, overlap 737498 AAATAAAACATTAAA GAACCTTGTCATATCAA TTATCG TTGATATGACAAGGTTC TTTTGATAGTTTAAA M28_Spy0717 737716 - 738192 + | mutator protein T M28_Spy0718 738250 - 739431 + | hypothetical protein M28_Spy0719 739403 - 740668 + | TPR repeat-containing protein TERM 955 740711 - 740674 - T 100 -7.7 -5.89921 | opp_overlap 740674 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGAA ATAA CTTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA TERM 956 740674 - 740711 + T 100 -13.6 -5.32565 | opp_overlap 740674 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGA AATAAC TTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA fbp 742421 - 740727 - | fibrinogen-binding protein TERM 957 741056 - 741067 + g 72 -4.4 -4.70659 | AGTTATTGCGTCCCA CCAT GAGA ATGG TTTTTCCATCTGAAG M28_Spy0721 742426 - 742551 + | hypothetical protein TERM 958 742639 - 742663 + F 93 -7.9 -5.45802 | opp_overlap 742638 TTGGATTTCACAAGG GCGCCTAGTAA TCA TTACTAAGTGC TTTTTCTTTTGAGAA TERM 959 743242 - 743224 - gf 74 -4.6 -4.88407 | overlap 743226 TGATTTAATGAAAAA TCTGACAC CAC ATGTCAAA ACAGTTGGAATTTTA M28_Spy0722 742733 - 743731 + | ABC transporter substrate-binding protein M28_Spy0723 743682 - 743900 + | hypothetical protein M28_Spy0724 744064 - 744945 + | ABC transporter permease protein M28_Spy0725 744942 - 745700 + | ABC transporter ATP-binding protein TERM 960 745714 - 745738 + F 85 -6.5 -5.38497 | opp_overlap 745701 745714 AATCAACGATCTAAA TCATTGACTAA TAA TAAGTCAGTGA TTTTTTGATTTCCAT M28_Spy0726 745904 - 747565 + | Zn-dependent hydrolase TERM 961 747575 - 747602 + F 89 -9.3 -4.19735 | gap 1, opp_overlap 747574 747572 747575, overlap 747579 CGTTAGTGAAAATAG GAAGGTTAGGCA AAAAC TGCCTA-CCTTC TTTGATTTTAACAAC TERM 962 747602 - 747575 - f 76 -10 -2.81208 | gap 1, opp_overlap 747575 747579, overlap 747574 747572 CGTTAGTGAAAATAG GAAGGTTAGGCAA AAA CTGCCTA-CCTTC TTTGATTTTAACAAC estA 747698 - 748483 + | acetyl esterase M28_Spy0728 748513 - 748839 + | hypothetical protein TERM 963 748848 - 748863 + F 91 -5.4 -5.80364 | opp_overlap 748848 AAACTAGGCTGAAAA TGTCCT CAAA AGGGCA TTTTTTTGTTAGAAT TERM 964 749308 - 749334 + G 79 -9.6 -3.72893 | opp_overlap 749314, overlap 749309 749314 ACATATGAAGCTGAG ATTAAAGCCATT TTA AATGGCTTTAAA TTTGATGAAAGCATG TERM 965 749309 - 749333 + G 90 -13.1 -2.83522 | opp_overlap 749314, overlap 749308 749314 CATATGAAGCTGAGA TTAAAGCCATT TTA AATGGCTTTAA ATTTGATGAAAGCAT TERM 966 749314 - 749328 + G 77 -8.6 -3.87149 | opp_overlap 749314, overlap 749309 749308 GAAGCTGAGATTAAA GCCATT TTA AATGGC TTTAAATTTGATGAA TERM 967 749328 - 749314 - g 77 -8.6 -3.84712 | opp_overlap 749309 749308 749314 GAAGCTGAGATTAAA GCCATT TTA AATGGC TTTAAATTTGATGAA TERM 968 749680 - 749664 - g 74 -5.1 -4.66318 | AGTAGCCGAAGAAAA GCAGTTT GAC AAACAGC AAAAAGAAATTGCCA TERM 969 750505 - 750480 - g 85 -7.6 -4.84359 | gap 1, overlap 750496 TTACCTTGAGAAAAA GGCAGAGCTAG AAGAA CTAGCCC-GCC TAGCAGCAGGAGAGA M28_Spy0729 748885 - 750792 + | ABC transporter ATP-binding protein TERM 970 750796 - 750822 + F 88 -7.5 -4.95896 | gap 1, opp_overlap 750796 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGT TERM 971 750822 - 750796 - f 88 -7.5 -5.02439 | gap 1, opp_overlap 750796 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGT TERM 972 751135 - 751151 + G 73 -9.5 -3.1478 | opp_overlap 751133, overlap 751106 751133 AAAATGGAACGTATT CGTGAAT TTG ATTCACG TATTAATAAACTCGT TERM 973 751884 - 751873 - g 80 -4.4 -5.28942 | GAGTGGAAAGAAAAA GATC CAAT GATC AAATATCGTACTTAT acoA 751066 - 752046 + | pyruvate dehydrogenase E1 component alpha subunit acoB 752102 - 753103 + | pyruvate dehydrogenase E1 component beta subunit TERM 974 753399 - 753360 - g 81 -5.8 -5.05782 | gap 1, opp_overlap 753373 ATCGAGTGGAAAAAA CAAGAAGGTGAT-ACCGTC AAT GAAGGTGATATCCTTCTTG AAATCATGTCAGACA TERM 975 754344 - 754366 + G 77 -6.3 -4.58213 | overlap 754345 CCTGTTATCCATGGG GCTGACAAG ATGAG CTTGTCAGA TTTTGTGCTTGCTTC TERM 976 754345 - 754365 + G 75 -9.8 -3.33843 | overlap 754344 CTGTTATCCATGGGG CTGACAAG ATGAG CTTGTCAG ATTTTGTGCTTGCTT acoC 753288 - 754697 + | branched-chain alpha-keto acid dehydrogenase subunit E2 M28_Spy0733 754995 - 754708 - | hypothetical protein TERM 977 754857 - 754839 - G 75 -10.3 -3.25356 | overlap 754834 TGATAAGCAATTGAA TCCGAGC GAAAA GCTCGGA TAAAAATGGTAAGAG TERM 978 756077 - 756061 - g 79 -5.1 -5.09426 | overlap 756062 TTGAACTTCAAAAAA TCCTTTC TAA GAAAGGC ATGAAGATCAAAACA TERM 979 756076 - 756062 - g 73 -8.6 -3.64933 | overlap 756061 TGAACTTCAAAAAAT CCTTTC TAA GAAAGG CATGAAGATCAAAAC acoL 755028 - 756791 + | dihydrolipoamide dehydrogenase M28_Spy0735 757034 - 756807 - | hypothetical protein TERM 980 756911 - 756868 - G 72 -10.4 -2.58231 | opp_overlap 756870, overlap 756867 756879 756893 AGCACAACTATGAAC TGCACCCCAAACGTTAGA TATAAAAC CCTAACGTTTGGGGTGTT TTTGTATGACATTAA TERM 981 756870 - 756909 + g 100 -16.7 -4.98522 | opp_overlap 756868 756867 756879 756893 CACAACTATGAACTG CACCCCAAACGTTAG ATATAAAACC CTAACGTTTGGGGTG TTTTTGTATGACATT TERM 982 757030 - 757015 - G 83 -3.3 -5.55695 | GAAGAAGACAAAAAA CCATT ATAAAG AATGG ACAAAGACGAGCTCT TERM 983 757180 - 757136 - R 88 -7.3 -5.13722 | opp_overlap 757142, overlap 757137 757142 757164 CGTATCAAAATAAAA CGAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTACT TCAAATAGAGTAGCC TERM 984 757179 - 757137 - R 89 -10.8 -3.67149 | opp_overlap 757142, overlap 757136 757142 757164 GTATCAAAATAAAAC GAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTAC TTCAAATAGAGTAGC TERM 985 757174 - 757142 - R 100 -9.3 -4.83677 | opp_overlap 757142, overlap 757137 757136 757164 AAAATAAAACGAAAA GGACTTAGTCCTCTA CAA TACAGAACTAAATCC TTTACTTCAAATAGA hylA 759950 - 757464 - | hyaluronate lyase precursor TERM 986 759932 - 759919 - G 71 -3.9 -4.86822 | AATGAGATAATAAAA GTAAA TTGG TTTAC TAAGTAAAAATATAC lplB 760114 - 761103 + | lipoate-protein ligase A TERM 987 761187 - 761151 - T 74 -5.3 -4.76171 | gap 1, opp_overlap 761151 761175, overlap 761146 GAAAAAACTATAAAA CTCCTAAGC-GAAC TATCTATCGT GTCCTGCTTAGGAG TTTTTGTTTGATGAC TERM 988 761151 - 761187 + T 74 -3.1 -5.33405 | gap 1, opp_overlap 761151 761146, overlap 761175 GAAAAAACTATAAAA CTCCTAAGC-GAAC TATCTATCGT GTCCTGCTTAGGAG TTTTTGTTTGATGAC M28_Spy0738 762007 - 761216 - | hypothetical protein M28_Spy0739 763350 - 762007 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 989 762135 - 762150 + g 75 -5.4 -4.7219 | CTTCCATGATTTGCT CGAGCT TTTC AGCTTG TTTTATCTTAGTGTC TERM 990 764048 - 764072 + G 72 -8.7 -3.54935 | GCAGCCTGTGCTTAC TTGCCTTTG TCAGAAT CAAAGGCAA TTTCCAAAGAATTTG M28_Spy0740 763457 - 764308 + | hypothetical protein M28_Spy0741 764305 - 765261 + | hypothetical protein TERM 991 765551 - 765563 + G 70 -7.7 -3.63298 | overlap 765549 ACTTGGCGTTTTAGC GACAC CTG GTGTC TCTTATTTAGTTAGA TERM 992 765634 - 765588 - g 76 -4.5 -5.1523 | gap 1, overlap 765589 GTTAGAACAGAAAAA GCAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTGA CAATGGCATCAAATT TERM 993 765633 - 765589 - g 70 -8 -3.68053 | gap 1, overlap 765588 TTAGAACAGAAAAAG CAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTG ACAATGGCATCAAAT femD 765315 - 766670 + | phosphoglucosamine mutase TERM 994 766710 - 766689 - f 81 -8.1 -4.11183 | opp_overlap 766693, overlap 766693 GTTGAGTACAAACAA GAAACCTTA TTTC TAAGGCTTC TGTCAACAATTGGAA TERM 995 766706 - 766693 - f 71 -5.3 -4.63952 | opp_overlap 766693, overlap 766689 AGTACAAACAAGAAA CCTTA TTTC TAAGG CTTCTGTCAACAATT TERM 996 766721 - 766760 + F 77 -10.2 -2.56914 | opp_overlap 766727, overlap 766727 GCTTCTGTCAACAAT TGGAAAGAGGCTTGGG GCGTTTAG CCCAAGTCTCTTTTTA TAAATTGCTAAAGTA TERM 997 766754 - 766727 - f 70 -7 -3.72051 | opp_overlap 766727 766721 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTTATAAATTGCT TERM 998 766727 - 766754 + F 100 -9.2 -4.92314 | opp_overlap 766727, overlap 766721 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTTATAAATTGCT TERM 999 766883 - 766867 - gf 72 -9.5 -2.7035 | opp_overlap 766866 766865 766881 TTTACTTAGATATGA TTCCTGA ATT TCAGGAA GGTTATGCTTCATAT M28_Spy0743 766794 - 767435 + | hypothetical protein hemN 767402 - 768628 + | coproporphyrinogen III oxidase M28_Spy0745 768638 - 769390 + | acyl-acyl carrier protein thioesterase M28_Spy0746 769390 - 770154 + | 4-nitrophenylphosphatase M28_Spy0747 770142 - 770786 + | hypothetical protein TERM 1000 770812 - 770792 - f 84 -8.3 -4.58466 | opp_overlap 770792, overlap 770787 TGTAGAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTAGTTTGCAG TERM 1001 770792 - 770812 + F 100 -10.5 -5.37593 | opp_overlap 770787 770792 TGTAGAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTAGTTTGCAG TERM 1002 770871 - 770857 - f 100 -11.4 -5.89827 | opp_overlap 770856 770855 AAGTATCAAAAAAAA GCACCG ACT CGGTGC CACTTTTTCAAGTTG TERM 1003 771529 - 771541 + G 74 -4.1 -5.14563 | opp_overlap 771507 ATAGTTTCTTTCATC GACTT GAA GAGTC TTTTTTGGTGGAAGA M28_Spy0748 771231 - 775337 + | putative cytoplasmic protein TERM 1004 775440 - 775454 + G 70 -3.6 -4.89477 | CGGAGCTGATCCATT TATCAG AAA TTGATA TTTTGTTATTAGAAA TERM 1005 775698 - 775713 + G 73 -7.6 -4.09685 | ATCAATCTTGCTATC TAGGAG CATG CTCCTA TTTTGAAAAATCCCA M28_Spy0749 775337 - 776206 + | putative cytoplasmic protein M28_Spy0750 776203 - 776544 + | putative cytoplasmic protein M28_Spy0751 776468 - 777196 + | hypothetical protein M28_Spy0752 777738 - 778880 + | transposase TERM 1006 778985 - 779002 + F 84 -5.5 -5.58179 | opp_overlap 778985, overlap 778987 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 1007 779002 - 778985 - f 83 -7.7 -4.65747 | opp_overlap 778985 778987 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 1008 779175 - 779160 - g 72 -9 -3.40175 | overlap 779156 779158 ATTTTGGAAAAGACA GAGACG GTTT CGTCTC GTGAAATGCAGGCTC TERM 1009 780827 - 780849 + G 83 -9.2 -3.9693 | overlap 780829 TGGTTCTGTTGAAGT CCCTCAAGAA GCC TTCTTGAGTG TTCTTTCAATGGATG TERM 1010 780829 - 780847 + G 79 -10.4 -3.57185 | overlap 780827 GTTCTGTTGAAGTCC CTCAAGAA GCC TTCTTGAG TGTTCTTTCAATGGA lepA 779049 - 780881 + | GTP-binding protein LepA TERM 1011 781491 - 781460 - g 100 -21 -3.69373 | GAAAGAGGGGAACAA GGACCAACAGGTCC AACC GGACCTGCTGGTCC ACGAGGTCTACAAGG TERM 1012 781563 - 781541 - g 89 -12 -3.69373 | GAAAGAGGGGAACAA GGACCAACAG GTC CCGCTGGTCC ACGAGGTCTACAAGG M28_Spy0754 781169 - 782437 + | collagen-like surface protein TERM 1013 782498 - 782477 - f 87 -13.1 -2.82666 | opp_overlap 782477, overlap 782474 782473 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA TERM 1014 782477 - 782498 + F 100 -13.1 -5.08824 | opp_overlap 782477 782474 782473 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA msrB 782623 - 783060 + | methionine sulfoxide reductase B TERM 1015 783621 - 783649 + G 78 -4 -5.22289 | gap 1, overlap 783624 783629 CATTAAGGCAAAGGA TGA-TGAGGTTGC TAAG GCAATTTCAGTCA TTTTTCTCTTTAATA M28_Spy0756 783190 - 784209 + | hypothetical protein TERM 1016 784220 - 784240 + F 100 -11.3 -5.80248 | opp_overlap 784220 784224 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 1017 784240 - 784220 - f 83 -11.3 -2.73067 | opp_overlap 784220, overlap 784224 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 1018 784376 - 784390 + F 71 -3.5 -5.1356 | TGAGATAAGCAATTA CCGTT TATTC AGCGG TTTTTGTTAATAGAG M28_Spy0757 784416 - 784841 + | PTS system mannose/fructose family IIA subunit TERM 1019 785012 - 785002 - g 71 -6.8 -4.13304 | AAATGACGCTTAAAA TGGC TGT GCCA AACGGCATGAAACTG ptsB 784860 - 785351 + | PTS system mannose/fructose family IIB subunit ptsC 785368 - 786177 + | PTS system mannose/fructose family IIC subunit ptsD 786174 - 787001 + | PTS system mannose/fructose family IID subunit TERM 1020 787020 - 787053 + F 100 -14.1 -5.0925 | opp_overlap 787020 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA TERM 1021 787053 - 787020 - f 93 -9.7 -4.24342 | opp_overlap 787020 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA TERM 1022 787509 - 787521 + G 74 -4.9 -4.76041 | opp_overlap 787505 787509 TTTGCTAGTAACCCA CATTT AGG AAATG TTTTTAGTAAATCTG M28_Spy0761 787137 - 788786 + | two-component sensor kinase TERM 1023 789363 - 789350 - g 84 -6.7 -4.98616 | opp_overlap 789349 789350 TCAAAATATCAAAAA GCATC TTCA GATGC CTTTAAGTGATTACA M28_Spy0762 788790 - 789578 + | two-component response regulator TERM 1024 790449 - 790438 - g 70 -5.8 -4.45485 | ATCAGATGTACAAAA TGCC TTTG GGCA GTCAACTAGTAATAG M28_Spy0763 789572 - 790618 + | iron(III)-binding protein gabD 790731 - 792128 + | succinate-semialdehyde dehydrogenase TERM 1025 792187 - 792143 - f 100 -24 -3.5944 | opp_overlap 792143, overlap 792146 ATCTAGATTGTTAAA GAAGAGTGTAACGCCTTAAT AAACA ATCAAGGCGTTACACTCTTC TTTTTTAAAGTCAAA TERM 1026 792143 - 792187 + F 100 -21.8 -5.0538 | opp_overlap 792143 792146 ATCTAGATTGTTAAA GAAGAGTGTAACGCCTTAAT AAACA ATCAAGGCGTTACACTCTTC TTTTTTAAAGTCAAA TERM 1027 792184 - 792146 - f 100 -19.9 -3.93256 | opp_overlap 792143, overlap 792143 TAGATTGTTAAAGAA GAGTGTAACGCCTTAAT AAACA ATCAAGGCGTTACACTC TTCTTTTTTAAAGTC TERM 1028 792700 - 792649 - g 81 -7 -4.77896 | gap 1, opp_overlap 792649 792648 792646, overlap 792650 TAATGAAGTTAAAAA GTTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAAG GTCTGTTTTTATTAC TERM 1029 792699 - 792650 - g 79 -10.5 -3.45653 | gap 1, opp_overlap 792649 792648 792646, overlap 792649 AATGAAGTTAAAAAG TTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAA GGTCTGTTTTTATTA uvrC 792230 - 794026 + | excinuclease ABC subunit C M28_Spy0766 794211 - 794813 + | NAD(P)H-dependent quinone reductase M28_Spy0767 794938 - 796347 + | dipeptidase PepV TERM 1030 796368 - 796390 + T 100 -16.4 -4.51097 | opp_overlap 796368 TTATGACAGCAAAAA GAGCTGGAAC AGT GTTCCAGCTC TTTTGTGATGATTAG TERM 1031 796390 - 796368 - T 100 -16.4 -4.82667 | opp_overlap 796368 TTATGACAGCAAAAA GAGCTGGAAC AGT GTTCCAGCTC TTTTGTGATGATTAG trmE 797791 - 796415 - | tRNA modification GTPase TrmE TERM 1032 797165 - 797182 + g 76 -7.1 -4.18191 | TGTTCGAAGGAGATT TTCCAAA AGGC TTTGGAA TTCTTGTGTTTTTTC TERM 1033 797988 - 797975 - H 70 -2.3 -5.24129 | GGTTTTGATAAAAAA CTGAC CTAA GACAG CAGGGGAGCATGCTC TERM 1034 798060 - 798081 + H 84 -3.7 -5.64274 | AACGTATTTGTACTT TCGTGTCTA GGTT TAGGTGCGA TTTTTTTGTACCTAG rplJ 798125 - 798625 + | 50S ribosomal protein L10 rplL 798690 - 799055 + | 50S ribosomal protein L7/L12 TERM 1035 799183 - 799158 - f 100 -12.7 -4.56597 | opp_overlap 799144 799158 GTTTTTTGCCAAAAA TCCTGCCAAAA AAAT CTTTGGCAGGA TTTTTATTTTCTATA TERM 1036 799158 - 799183 + F 100 -12 -5.58522 | opp_overlap 799158, overlap 799144 GTTTTTTGCCAAAAA TCCTGCCAAA AAAATC TTTGGCAGGA TTTTTATTTTCTATA M28_Spy0771 799411 - 799551 + | hypothetical protein M28_Spy0772 799545 - 799913 + | IFN-response binding factor 1 M28_Spy0773 799892 - 800029 + | hypothetical protein TERM 1037 800034 - 800058 + F 76 -4.3 -5.18371 | opp_overlap 800034 ATTATAGTTGAGTAA GGACGTTAC ATAAGCA GTAAGGTCC TTTTATTTTGTCAGA M28_Spy0774 800079 - 800411 + | DNA-cytosine methyltransferase M28_Spy0775 800469 - 800681 + | relaxase M28_Spy0776 800724 - 800936 + | relaxase M28_Spy0777 801201 - 801512 + | relaxase srtI 801581 - 801898 + | SrtI srtR 802049 - 802735 + | two-component response regulator TERM 1038 802815 - 802827 + G 86 -7.7 -4.86385 | ACTGTTTTAATGATT GCGAT AAT ATCGC TTTCTTTTTCAAAGT TERM 1039 803256 - 803236 - g 73 -5.5 -4.64861 | overlap 803232 GGTTTGTAAAAGAAA TTTCTTTGA ATT TCAAGGAAA TCAAGAAGTTAGCAA srtK 802713 - 804074 + | sensor protein TERM 1040 804095 - 804143 + F 85 -4.2 -5.60993 | gap 1 TTGATTGAAACTGGA GTATTTCAGGCAAAAAATCGTAA ATTT TTGTGAT-TTTTGGCTAAAATAC TTTTTTTCTGAACAA srtA 804231 - 804371 + | lantibiotic TERM 1041 804434 - 804459 + F 75 -6.9 -4.258 | ATTTATAAATTTAGG GGAGTAGACTG ATTT TAGTTTGCTCC TTTATTAGTAGATAA srtT 804486 - 806276 + | ABC transporter (ATP binding)-lantibiotic associated M28_Spy0783 806248 - 807504 + | lanthionine synthetase M28_Spy0784 807523 - 810489 + | serine (threonine) dehydratase TERM 1042 810534 - 810522 - gf 90 -4.9 -5.61824 | opp_overlap 810525 CAAAATCTAAAAAAA TCTTA TGG TAAGA GAACCATATTGAATA srtF 810438 - 811184 + | lantibiotic transport ATP-binding protein TERM 1043 811425 - 811409 - g 76 -6.7 -4.41348 | opp_overlap 811390 GGTTTGTTAAATAAA TTAGAAT TAG ATTCTAA TAAGTATTCTGTTTT srtE 811190 - 811939 + | lantibiotic transport permease protein srtG 811942 - 812664 + | lantibiotic transport permease protein M28_Spy0788 812855 - 813073 + | phage associated transcriptional regulator TERM 1044 813076 - 813123 + T 100 -10 -4.63048 | opp_overlap 813076 TCATAATAAATAAAA GTCTCGCCTTGATTTGTTCATT GACA ACTGAATAAACCGAGGTGGGAC TTTCTTGTTTGTCGA TERM 1045 813123 - 813076 - T 71 -3.4 -5.14682 | opp_overlap 813076 TCATAATAAATAAAA GTCTCGCCTTGATTTGTTCATT GACA ACTGAATAAACCGAGGTGGGAC TTTCTTGTTTGTCGA M28_Spy0789 813397 - 813182 - | hypothetical protein M28_Spy0790 813597 - 813728 + | integrase pseudogene M28_Spy0791 813750 - 813971 + | integrase pseudogene M28_Spy0792 814044 - 814265 + | integrase pseudogene M28_Spy0793 814296 - 814679 + | integrase pseudogene TERM 1046 815779 - 815798 + G 71 -6.5 -4.2008 | opp_overlap 815778 815775 AAAAACCAAAACACG CGATTTG AGCAAG CAAATCG TTTGTTGGACTATGT dacA1 814822 - 816177 + | D-alanyl-D-alanine carboxypeptidase TERM 1047 816214 - 816245 + T 100 -14 -4.99134 | opp_overlap 816214 AAAACAATCAAAAAA GACAGTTATGAAAG AATT TTTTCATAACTGTC TTTTTAGTTTACAGT TERM 1048 816245 - 816214 - T 100 -13.3 -5.43514 | opp_overlap 816214 AAAACAATCAAAAAA GACAGTTATGAAA GAATTT TTTCATAACTGTC TTTTTAGTTTACAGT M28_Spy0795 817255 - 816293 - | polysaccharide deacetylase TERM 1049 817071 - 817092 + g 71 -6 -4.21812 | GTTTCTTTTTTTGCC GTCTTTTT GTGATG AAAAAGAC TTATTTTAGGTACAA TERM 1050 817314 - 817328 + H 86 -2.8 -5.80727 | opp_overlap 817314, overlap 817306 TTTTAGAGAAAAGAA GGCT TGAAGTC AGCC TTTTTTCTTGTTTTT M28_Spy0796 817343 - 817498 + | hypothetical protein folC.1 817492 - 818865 + | dihydrofolate synthase folE 818876 - 819484 + | GTP cyclohydrolase I folP 819493 - 820293 + | dihydropteroate synthase folQ 820300 - 820659 + | dihydroneopterin aldolase folK 820656 - 821156 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 1051 821146 - 821162 + F 75 -7.3 -4.12188 | opp_overlap 821146 821148 TTTCAGCTCAACAGA CAGAGTT CTA GACTCTG TTTTCGGAGTAATGC TERM 1052 821248 - 821262 + F 93 -7.1 -5.42862 | opp_overlap 821248 TTTGATATAATAGTA TCGGC TTTAT GCCGA TTTTTTTACGCGTAT murB 821306 - 822193 + | UDP-N-acetylenolpyruvoylglucosamine reductase potA 822239 - 823393 + | spermidine/putrescine transport ATP-binding protein potB 823356 - 824171 + | spermidine/putrescine transport system permease protein potC 824168 - 824944 + | spermidine/putrescine transport system permease protein M28_Spy0806 824937 - 826010 + | spermidine/putrescine-binding protein TERM 1053 826015 - 826047 + T 73 -9.3 -2.87564 | opp_overlap 826014 826012 826022, overlap 826022 ATCGCAAATAAGCAC TCAAAAAGGCTGG TATTTCT CCAGCCTTTTTAA TGTATCGACAGATGA TERM 1054 826022 - 826040 + T 88 -7.4 -4.84527 | opp_overlap 826014 826012 826022, overlap 826015 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA TERM 1055 826040 - 826022 - T 83 -7.4 -4.71382 | opp_overlap 826022 826015, overlap 826014 826012 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA dpiA 826730 - 826065 - | transcriptional regulatory protein dpiB 828252 - 826711 - | sensor kinase TERM 1056 826765 - 826781 + g 71 -7.3 -3.95022 | opp_overlap 826765 TGTTGTCACTGAGAA CTGTAAC TCG GTTACGG TTTGATGTTGATGGA TERM 1057 827487 - 827511 + g 86 -10 -4.09739 | GGTGATTGAAACTGT TGCCAGTAGG TTTTC CCAACTGGCA TTTTCGAGCGATTAA TERM 1058 827700 - 827690 - G 89 -6.8 -5.26247 | CGAAAAGAAATAAAA CTGG TGA CCAG TAAACTAATAAGAAG TERM 1059 829474 - 829462 - g 70 -7.7 -3.6422 | opp_overlap 829450 829461, overlap 829460 TATCCCCTTAAAAGA GGTTG TGG CAACC CTTAGCTGGCAATAT malP 828413 - 829744 + | malate-sodium symport M28_Spy0810 829776 - 830942 + | NAD-dependent malic enzyme TERM 1060 831023 - 830977 - T 100 -19.3 -3.64371 | gap 1, opp_overlap 830977 830985, overlap 830985 AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1061 830977 - 831023 + T 100 -19.3 -3.12378 | gap 1, opp_overlap 830977 830985, overlap 830985 AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1062 830985 - 831015 + T 93 -9.3 -4.55491 | gap 1, opp_overlap 830977 830985, overlap 830977 CTTTAAATCACAAAA TAAGTAGAAGCATA TTTC TA-GCTTCTACTTA TTTTGTGATTAGCTA TERM 1063 831015 - 830985 - T 93 -9.3 -4.61566 | gap 1, opp_overlap 830985 830977, overlap 830977 CTTTAAATCACAAAA TAAGTAGAAGCATA TTTC TA-GCTTCTACTTA TTTTGTGATTAGCTA M28_Spy0811 832004 - 831024 - | Zn-dependent alcohol dehydrogenase and related dehydrogenase TERM 1064 832477 - 832494 + G 76 -7.1 -4.15106 | opp_overlap 832489 CCAGGCTCATTTGAT TTTTTGC ATAA GCAAAAA TTTTGGGACTTAGTC aphA 832198 - 832929 + | acid phosphatase/phosphotransferase TERM 1065 832977 - 833004 + F 83 -6.2 -5.15969 | opp_overlap 832995 AATTTCTTTCATCAC CCCACTGAGTAA CCAA TAGCCCAGTGGG TTTTTTGGGTTACAG TERM 1066 833377 - 833365 - g 82 -7.7 -4.53303 | overlap 833369 GATTCTGATATAAAA GGATC AGG GATCC CCCATGTCGAAGGAG TERM 1067 833707 - 833717 + G 74 -4 -5.05113 | overlap 833703 GCGCTAGTGGCTAGC TTAG TGG CTAA TTTTATTTCTCTGAA TERM 1068 834098 - 834109 + G 86 -4.4 -5.4477 | overlap 834106 GTTATGGAAGTGGCT TACC TGGA GGTA TTTTTTTACCCATTT M28_Spy0813 833071 - 834639 + | chloride channel protein M28_Spy0814 834802 - 835416 + | lipase/acylhydrolase family protein M28_Spy0815 835575 - 836723 + | hypothetical protein TERM 1069 836712 - 836733 + F 89 -6.7 -5.626 | gap 1, opp_overlap 836712 GCTATTCAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA TERM 1070 836733 - 836712 - f 95 -6.7 -5.81412 | gap 1, opp_overlap 836712 GCTATTCAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA radC 836772 - 837452 + | DNA repair protein RadC M28_Spy0817 838149 - 837454 - | glutamine amidotransferase, class I M28_Spy0818 838803 - 838159 - | redox-sensing transcriptional repressor Rex TERM 1071 838925 - 838908 - R 88 -7.1 -5.1101 | GTATGAGTTAAAAAA GCTAAAA TTAG TTTTAGC ACTATATAATAGTAT M28_Spy0819 839402 - 839055 - | putative cytoplasmic protein nifS2 840519 - 839392 - | cysteine desulfhydrase TERM 1072 840058 - 840068 + g 71 -6.8 -4.0802 | opp_overlap 840058, overlap 840054 GTCCTTAATAGGTAA CAGG TCA CCTG TTTCGTTATTGGCAT M28_Spy0821 841496 - 840516 - | ribose-phosphate pyrophosphokinase TERM 1073 841593 - 841622 + r 81 -10.9 -2.75349 | opp_overlap 841595 841601, overlap 841590 841589 ACATCCCTATTTTAA CAGAAAAACAGAA AAAT TTCAGTTTTTCTG TCGCTTTTAGCCATT TERM 1074 841622 - 841601 - R 83 -6 -5.09762 | opp_overlap 841593 841590 841589, overlap 841595 ATTTTAACAGAAAAA CAGAAAAA TTTCAG TTTTTCTG TCGCTTTTAGCCATT M28_Spy0822 842214 - 841636 - | adenylate cyclase family protein TERM 1075 841968 - 842019 + g 73 -6.6 -4.21768 | opp_overlap 841958 TCATATCTTTTGCTT GTTCAAGAAAAAGAGGGACATTGT ACTC ACGATTCCCCACTTTTTCTGGCAC TTTTAAGGTTAATTC M28_Spy0823 842302 - 842973 + | GTP pyrophosphokinase ppnK 842945 - 843784 + | inorganic polyphosphate/ATP-NAD kinase M28_Spy0825 843781 - 844686 + | ribosomal large subunit pseudouridine synthase D eutD 844690 - 845685 + | phosphotransacetylase TERM 1076 845767 - 845787 + F 89 -6.8 -5.76949 | opp_overlap 845767 TGACATTATTAAAAA CGAGTTGG CCAGA CCATCTCG TTTTTTTTGAAGGTG TERM 1077 845787 - 845767 - f 83 -7.5 -4.79223 | opp_overlap 845767 TGACATTATTAAAAA CGAGTTGGC CAG ACCATCTCG TTTTTTTTGAAGGTG M28_Spy0827 845794 - 846567 + | short chain dehydrogenase M28_Spy0828 847450 - 846761 - | Na+ driven multidrug efflux pump TERM 1078 846796 - 846822 + g 78 -7.3 -4.33819 | gap 1, opp_overlap 846780 846775, overlap 846796 846797 846819 GGCCTGATGTGACAT C-GGACCAGCCA ACAA TGGCTTGTCCAG TTTCTTCTAAATACT TERM 1079 846797 - 846820 + g 76 -11 -2.51259 | opp_overlap 846780 846775, overlap 846796 846796 846819 GCCTGATGTGACATC GGACCAGCCA ACAA TGGCTTGTCC AGTTTCTTCTAAATA proV 847873 - 848601 + | glycine betaine transport ATP-binding protein M28_Spy0830 848558 - 850120 + | glycine betaine transport system permease protein TERM 1080 850128 - 850148 + F 84 -6.1 -5.27399 | AGAAATAAACAGAAA TGTTGGTCC ATA GGACTGGCA TTTTTTCGTCTCTTA guaC 850377 - 851381 + | guanosine 5'-monophosphate oxidoreductase TERM 1081 851611 - 851657 + F 88 -7.6 -5.20783 | gap 2, opp_overlap 851621, overlap 851612 851621 CTTGCTTGGTTTTTA ACCT--TGCAAAGTGAGAAACT CTTAT AGTTTCTCACTTTGCGGCAGGC TTTTTCTATTTGAAT TERM 1082 851612 - 851656 + F 89 -11.1 -3.70843 | gap 2, opp_overlap 851621, overlap 851611 851621 TTGCTTGGTTTTTAA CCT--TGCAAAGTGAGAAACT CTTAT AGTTTCTCACTTTGCGGCAGG CTTTTTCTATTTGAA TERM 1083 851645 - 851621 - f 90 -11.6 -3.57561 | opp_overlap 851612 851611 851621 TTTTAACCTTGCAAA GTGAGAAACT CTTAT AGTTTCTCAC TTTGCGGCAGGCTTT TERM 1084 851621 - 851645 + F 90 -11.6 -3.5394 | opp_overlap 851621, overlap 851612 851611 TTTTAACCTTGCAAA GTGAGAAACT CTTAT AGTTTCTCAC TTTGCGGCAGGCTTT xpt 851686 - 852267 + | xanthine phosphoribosyltransferase TERM 1085 852967 - 852996 + G 71 -6.5 -4.13872 | CTTTTGAAATCACTT CTATTGTGATGAT GTGT ATCATCGCAACGG TTTCTATGGTTGAAT M28_Spy0833 852267 - 853550 + | xanthine permease TERM 1086 853573 - 853559 - T 89 -7.1 -5.37865 | opp_overlap 853552 853559, overlap 853552 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA TERM 1087 853559 - 853573 + T 93 -7.1 -5.39721 | opp_overlap 853559 853552, overlap 853552 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA apbE 854552 - 853614 - | thiamine biosynthesis lipoprotein TERM 1088 853979 - 854007 + g 72 -9.7 -3.07816 | overlap 853965 GTTTTTGAATGCCAA TTCGAAAAGTCTT GTC AGGGCTTTTCGGA TTAGGTCCATGAACG TERM 1089 854599 - 854576 - R 87 -11 -3.40403 | opp_overlap 854574 854573, overlap 854578 CTCTTTTTAGCAGAA TACCCCCACT AAGG AGTGGGGGAA GGTCATTATGATTTT TERM 1090 854597 - 854578 - R 93 -13.6 -3.27475 | opp_overlap 854574 854573, overlap 854576 CTTTTTAGCAGAATA CCCCCACT AAGG AGTGGGGG AAGGTCATTATGATT M28_Spy0835 854790 - 854605 - | 4-oxalocrotonate tautomerase tdk2 854928 - 855497 + | thymidine kinase TERM 1091 855899 - 855913 + G 75 -5.6 -4.78107 | GTGGTGCTGCTGGTG GCGATG AAG CAGCGC TTTTTGCTGGTGATC prfA 855532 - 856611 + | peptide chain release factor 1 hemK 856611 - 857450 + | peptide release factor-glutamine N5-methyltransferase M28_Spy0839 857404 - 858024 + | SUA5 protein M28_Spy0840 858042 - 858494 + | phosphinothricin N-acetyltransferase TERM 1092 859364 - 859381 + G 79 -6.9 -4.57073 | opp_overlap 859364 859362 CTATTATTGATAATA CTGCGGC TATG GCAGCAG TTTTTGCACAAGATG glyA 858478 - 859740 + | serine hydroxymethyltransferase M28_Spy0842 859747 - 860724 + | hypothetical protein M28_Spy0843 860725 - 861324 + | antigen TERM 1093 861642 - 861656 + G 72 -8.6 -3.46117 | opp_overlap 861639 861636 TTTGAGCAAGGAGGA CCAAGA CCA TCTTGG TTATGCTAGTCTGGT M28_Spy0844 861334 - 863052 + | multidrug resistance ABC transporter ATP-binding and permease protein TERM 1094 863077 - 863098 + G 76 -7.3 -4.15044 | opp_overlap 863072 AAACAGACCATCACC TCCTAAAGC GAGT GCTTCAGGA TTTGTTAAAAAAACC TERM 1095 864248 - 864228 - g 85 -12.7 -3.14211 | opp_overlap 864219 864228 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT TERM 1096 864228 - 864248 + G 84 -12.7 -3.08173 | opp_overlap 864228, overlap 864219 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT M28_Spy0845 863055 - 864782 + | multidrug resistance ABC transporter ATP-binding and permease protein TERM 1097 864784 - 864807 + F 80 -6.8 -4.75308 | opp_overlap 864784 AAAAGATAGAATAAA GTTCGTCTTT TAAC AAAGGTGAAC TTTTTAAGTCTTCCT nox 865023 - 866393 + | NADH oxidase H2O-forming TERM 1098 866410 - 866434 + T 93 -7.7 -5.54079 | opp_overlap 866410 ATCTGATAGGAAAAA GCCAGAGCAGT TCA GCAGCACTGGC TTTTTTGCTTTTTAA TERM 1099 866434 - 866410 - T 83 -7 -4.80882 | opp_overlap 866410 ATCTGATAGGAAAAA GCCAGAGCAG TTCAG CAGCACTGGC TTTTTTGCTTTTTAA TERM 1100 866550 - 866524 - T 78 -7.5 -4.23723 | gap 1, opp_overlap 866524 866525 866530, overlap 866530 GAATATCAGGCAAAA CA-AAAAGAGAC CGAA GTCTCTTTTGTG ATTAGTTTTTAGCAG TERM 1101 866530 - 866543 + T 76 -6.7 -4.59117 | opp_overlap 866530 866524, overlap 866525 866524 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT TERM 1102 866543 - 866530 - T 87 -6.7 -5.48213 | opp_overlap 866525 866524 866530, overlap 866524 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT ldh 867535 - 866552 - | L-lactate dehydrogenase TERM 1103 866621 - 866634 + g 72 -3.1 -5.09426 | AGCTTTCAATTGATT TGCAG AGGC TTGCA TTTTTTGCAATTCAG TERM 1104 867250 - 867274 + g 71 -5 -4.56597 | opp_overlap 867238 GAAGGTTTTTTTCAA CCAGGTCAAG GCGTG TTTCACCTGG TTTTTGAGGAGCACC TERM 1105 869973 - 869938 - g 76 -3.4 -5.28166 | gap 1 GAAAAGGAATAAAAA CAGCTAATATTACCCCT AAA AATGGTCA-ATTAGCTG GATTGGTTACCGTAG gyrA 867726 - 870212 + | DNA gyrase subunit A TERM 1106 870773 - 870755 - g 85 -2.5 -5.76237 | opp_overlap 870765, overlap 870759 870765 CAGATAAAGAAAAAA TTTACGA ATACA TCATAAA AGATGTTTTCACGGT M28_Spy0849 870232 - 870981 + | sortase M28_Spy0850 871061 - 871477 + | lactoylglutathione lyase TERM 1107 871756 - 871775 + F 76 -6.6 -4.48175 | CGTATTAATGTTTTT TTATCTAT TACG ATAGATAA TTTTACTTCAATTTT TERM 1108 872065 - 872046 - g 79 -3.6 -5.41746 | AACTTGCTAAAAAAA TGTTTAAC GATA GTAAAACA CCGTCTAAAAGAAAG M28_Spy0851 871964 - 872083 + | hypothetical protein M28_Spy0852 872034 - 872525 + | hypothetical protein TERM 1109 872576 - 872551 - T 79 -9.1 -3.41292 | opp_overlap 872557, overlap 872557 ACCTTTAAGATAAGA CAAAAAGTGCC ATTA GGCACTTTTTT AATCTTCTGTTGGAA TERM 1110 872557 - 872570 + T 90 -8.1 -5.30189 | opp_overlap 872557 872551 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG TERM 1111 872570 - 872557 - T 90 -8.1 -5.18995 | opp_overlap 872557, overlap 872551 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG M28_Spy0853 873486 - 872575 - | hypothetical protein TERM 1112 873416 - 873436 + g 80 -4.7 -5.18866 | overlap 873420 TGGCAAAAATAGTCT TTGACTTGC CTA GCAAGTTGG TTTTCTTTCTTTCCA TERM 1113 873420 - 873432 + g 73 -7.7 -3.92097 | overlap 873416 AAAAATAGTCTTTGA CTTGC CTA GCAAG TTGGTTTTCTTTCTT TERM 1114 873558 - 873542 - R 73 -8.1 -3.63991 | TACCACTTCTAAGAA TTGATGT CTT ACATCAA ATCATCACATTAAGC M28_Spy0854 874253 - 873603 - | hypothetical protein TERM 1115 874181 - 874197 + g 77 -8.7 -3.85704 | overlap 874183 TAGCAAATGCTCCGA TAGCGTG TGT CACGCTG TTTGCTACTTCCTCA TERM 1116 874183 - 874195 + g 74 -9.1 -3.51124 | overlap 874181 GCAAATGCTCCGATA GCGTG TGT CACGC TGTTTGCTACTTCCT M28_Spy0855 874690 - 874250 - | putative cytoplasmic protein rbgA 874909 - 875757 + | ribosomal biogenesis GTPase TERM 1117 876206 - 876194 - g 75 -7.7 -4.01419 | TATGAAGCAACCAAA CTAGC TAT GCTAG AAGCCATTAAACAGT rnhB 875822 - 876538 + | ribonuclease HII TERM 1118 876543 - 876559 + F 95 -5.9 -6.28401 | opp_overlap 876543 CTAATCCTTAAAAAG TTCTGTT TTT AGCAGAA TTTTTTTCTTTTTTA smf 876603 - 877439 + | hypothetical protein TERM 1119 877835 - 877822 - g 76 -2.3 -5.41746 | overlap 877809 AATTCTTTAAAAAAA GAAGC CAAA GCTGC TAAAAAAGTTTATTT TERM 1120 878346 - 878320 - g 76 -11 -2.64454 | overlap 878319 878317 CTAACAAATGAAGAT TTTCTTGTCAGC AAG GTTGACAAGAAA GAGCGACGTCGTAAT M28_Spy0859 877546 - 879675 + | DNA topoisomerase I TERM 1121 879710 - 879681 - T 100 -6.6 -6.01187 | opp_overlap 879681 AATTAAATAAAAAAA GAATTGGAAC TCCTTGTCTT GTTCCAATTC TTTTTTTATTTACAA TERM 1122 879681 - 879710 + T 95 -6.6 -5.95539 | opp_overlap 879681 AATTAAATAAAAAAA GAATTGGAAC TCCTTGTCTT GTTCCAATTC TTTTTTTATTTACAA M28_Spy0860 880232 - 879750 - | LysR family transcriptional regulator M28_Spy0861 880361 - 880239 - | LysR family transcriptional regulator M28_Spy0862 880647 - 881192 + | regulatory protein ddh 881204 - 882199 + | D-lactate dehydrogenase TERM 1123 882213 - 882256 + F 100 -14.3 -5.17576 | opp_overlap 882225, overlap 882225 AACAACTGATTTGAC GTCCATTATAAAGGAAT AATTCCAAAA ATTCCTTTATAATGGAC TTTTTTGCATTAGTC satD 882304 - 882969 + | hypothetical protein satE 882962 - 883678 + | hypothetical protein TERM 1124 883694 - 883724 + F 95 -8.5 -5.1361 | gap 1, opp_overlap 883701, overlap 883701 TTGAAAAGGGTTCCC GTAGAAAGAGGCTA CACA TAGCCTCTTT-TGC TTTTTTCCCCTTTCT TERM 1125 883718 - 883701 - f 83 -9.9 -3.85698 | opp_overlap 883701 883694 GGGTTCCCGTAGAAA GAGGCTA CACA TAGCCTC TTTTGCTTTTTTCCC TERM 1126 883701 - 883718 + F 100 -9.9 -4.86862 | opp_overlap 883701, overlap 883694 GGGTTCCCGTAGAAA GAGGCTA CACA TAGCCTC TTTTGCTTTTTTCCC gid 883776 - 885170 + | tRNA (uracil-5-)-methyltransferase Gid TERM 1127 885184 - 885213 + F 76 -3.6 -5.30155 | opp_overlap 885173, overlap 885185 AACACTAAAAAAGAG TTCCTTTTCAGT TGAGTT GCTGAAGAGGAC TTTTTTCCTTGCTGA TERM 1128 885185 - 885212 + F 70 -7.1 -3.77008 | opp_overlap 885173, overlap 885184 ACACTAAAAAAGAGT TCCTTTTCAGT TGAGTT GCTGAAGAGGA CTTTTTTCCTTGCTG oadA2 885323 - 886729 + | oxaloacetate decarboxylase M28_Spy0868 886772 - 887086 + | hypothetical protein TERM 1129 887234 - 887204 - g 71 -5.3 -4.57482 | overlap 887209 CTACTGAGAAAGAAA TGAATGCCAACGC TGCTG GCGGTGGCCTACA GGTAAAGGCTCCAAT M28_Spy0869 887086 - 887436 + | biotin carboxyl carrier protein of oxaloacetate decarboxylase M28_Spy0870 887446 - 888576 + | oxaloacetate decarboxylase beta chain TERM 1130 888621 - 888643 + T 84 -6.3 -5.14563 | AATAAATCATTATCA GGAGTTGGA AGCAA TCTAGCTCC TTTTTTAGTAGAAAG M28_Spy0871 889661 - 888777 - | 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase citG 890349 - 889654 - | GntR family transcriptional regulator TERM 1131 890104 - 890115 + g 81 -5.8 -5.04385 | GATACTAACTCCTTT GGCA ATAA TGCC TTTTTTAGGAATGTG TERM 1132 890302 - 890317 + g 82 -6.2 -4.87133 | TTTCAAAGGGATATT TCTTGA TAGG TCAAGA TTTTGTTTAACGGCT TERM 1133 890467 - 890434 - R 71 -5.4 -4.58663 | opp_overlap 890434 ATGAGTTCTGAAAAA TTAAAGCCATGCTC ACAAAA GGACATGACTTTAA TCATCTCATAAGGAA M28_Spy0873 891931 - 890507 - | Mg2+/citrate complex secondary transporter TERM 1134 892120 - 892169 + H 90 -11.1 -3.87869 | AGTATCTTGATCTCA GTTTTTCAACAGTTACCTA AAAATAAAATAA AAGGTAACTGTTGAAAAAC TTTATGAAACATTGA M28_Spy0874 892290 - 892613 + | hypothetical protein M28_Spy0875 892667 - 893065 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit oadB 893110 - 894231 + | oxaloacetate decarboxylase beta chain M28_Spy0877 894249 - 894383 + | hypothetical protein citD 894419 - 894727 + | citrate lyase subunit gamma TERM 1135 895530 - 895517 - g 74 -5.3 -4.81249 | CCTTAAATGGAAAAA TGGTT GATA AACCA ATCGTTGAACGTGCA citE 894715 - 895602 + | citrate lyase beta chain citF 895605 - 897137 + | citrate CoA-transferase citX 897067 - 897708 + | 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase TERM 1136 897745 - 897733 - g 80 -7.7 -4.33105 | overlap 897735 CAATTATGACGAAAA TCCGT ATA ACGGA AACAGTTTTACGTGA oadA1 897705 - 899117 + | oxaloacetate decarboxylase TERM 1137 899191 - 899217 + T 93 -8.1 -5.49569 | opp_overlap 899191 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTATCTTAGTA TERM 1138 899217 - 899191 - T 100 -10.3 -4.93316 | opp_overlap 899191 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTATCTTAGTA citC 900279 - 899227 - | [citrate [pro-3S]-lyase] ligase TERM 1139 899734 - 899717 - G 71 -4.9 -4.65895 | gap 1, overlap 899698 899718 899721 TTTCGTACTGAAAAA GGAACCAA GCT TTGGT-CC TCACTGACCATAAAC M28_Spy0884 900850 - 900368 - | hypothetical protein TERM 1140 901516 - 901555 + r 93 -13.3 -3.49668 | overlap 901517 TAAAAGCTATTTTTA TCTTTAATGTTACATAA AAACAA TTATGTAACATTAAAGG TTATCTAAAGCATTT TERM 1141 901517 - 901554 + r 95 -14.6 -2.69319 | overlap 901516 AAAAGCTATTTTTAT CTTTAATGTTACATAA AAACAA TTATGTAACATTAAAG GTTATCTAAAGCATT xerS 902655 - 901549 - | site-specific tyrosine recombinase XerS TERM 1142 902064 - 902024 - G 74 -9.2 -3.47383 | gap 1, overlap 902022 AGTAGAGCAATAATA GCCAAATC-CCTCTCCTTA TTTT TACGGAAAGAAGATTTGGC ACGATTAGACAATTT TERM 1143 902160 - 902174 + g 91 -7.8 -5.29208 | GCTTAATATTTTCCG CTCTGG AGG CCAGGG TTTCTTTTTTCTTTT TERM 1144 902772 - 902783 + H 82 -4.4 -5.42259 | opp_overlap 902766 TCGGAAAGATGTCAC GAGA CAAA TCTC TTTTTTTACAGATAC TERM 1145 903076 - 903053 - H 75 -9.8 -2.62263 | overlap 903068 ATTTTTTTGATACTA TTAGTAAAGT TATA ACTTTACTAA AGGAGCTACCAAATG M28_Spy0886 903089 - 903787 + | phage transcriptional repressor TERM 1146 903895 - 903924 + T 83 -6.5 -4.9251 | opp_overlap 903900, overlap 903900 AATGAATTTCACATC AAAAAGAGACGAA AATT TCCGTCTCTTTTA TTTTCGTTTTTTCTT TERM 1147 903900 - 903919 + T 85 -6.4 -5.24291 | opp_overlap 903900, overlap 903895 ATTTCACATCAAAAA GAGACGAA AATT TCCGTCTC TTTTATTTTCGTTTT TERM 1148 903919 - 903900 - T 93 -8.6 -4.80882 | opp_overlap 903895 903900 ATTTCACATCAAAAA GAGACGAA AATT TCCGTCTC TTTTATTTTCGTTTT ffh 905490 - 903922 - | signal recognition particle, subunit FFH/SRP54 ylxM 905840 - 905499 - | hypothetical protein TERM 1149 905925 - 905906 - R 75 -5 -5.00616 | opp_overlap 905907 905910, overlap 905907 TGTTCGTGTAAAAAA GGAAGTCA TAAA TGACTTCT TTACTAATTATTTTC TERM 1150 905907 - 905924 + r 82 -8.5 -3.91642 | opp_overlap 905907 905906, overlap 905910 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT TERM 1151 905924 - 905907 - R 77 -8.5 -3.60048 | opp_overlap 905907 905910, overlap 905906 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT M28_Spy0889 906654 - 905929 - | GntR family transcriptional regulator M28_Spy0890 908143 - 906710 - | hypothetical protein TERM 1152 907122 - 907133 + g 72 -4.4 -4.83169 | AATTCTGGCGCATAG CCAA TAAA TTGG TTTTTCTCAAACAAT TERM 1153 907529 - 907515 - G 70 -8.6 -3.28712 | opp_overlap 907504, overlap 907522 TGCTGCTTTGCATAA GCGAAA GCT TTTCGC AAAAGACGATTGTTT guaA 908310 - 909872 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1154 909928 - 909873 - T 100 -23.2 -3.68222 | gap 1, opp_overlap 909875 909878 909882, overlap 909875 909878 909882 909890 GTTGAATGGGAATAA CAGAATAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTATTCTT TAACTGTTTTCGTAT TERM 1155 909875 - 909926 + T 100 -25.8 -3.85786 | gap 1, opp_overlap 909873 909875 909878 909882 909890, overlap 909878 909882 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1156 909926 - 909875 - T 100 -25.8 -3.42069 | gap 1, opp_overlap 909875 909878 909882, overlap 909873 909878 909882 909890 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1157 909878 - 909923 + T 100 -21.7 -4.03611 | gap 1, opp_overlap 909875 909873 909878 909882 909890, overlap 909875 909882 ATGGGAATAACAGAA TAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1158 909923 - 909878 - T 100 -21.7 -3.8372 | gap 1, opp_overlap 909878 909875 909882, overlap 909875 909873 909882 909890 ATGGGAATAACAGAA TAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1159 909919 - 909882 - T 100 -18.1 -4.51763 | gap 1, opp_overlap 909882 909878 909875, overlap 909878 909875 909873 909890 GAATAACAGAATAAA CATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1160 909882 - 909919 + T 100 -18.1 -4.58585 | gap 1, opp_overlap 909878 909875 909873 909882 909890, overlap 909878 909875 GAATAACAGAATAAA CATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1161 909911 - 909890 - T 93 -9.5 -4.55446 | gap 1, opp_overlap 909882 909878 909875, overlap 909882 909878 909875 909873 GAATAAACATTAAAA GACTCGCTCA TTT TG-GCGAGTC TTTTAATGTTTATTC M28_Spy0892 911137 - 909914 - | UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase TERM 1162 911385 - 911398 + r 82 -5.3 -5.30155 | opp_overlap 911385, overlap 911378 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA TERM 1163 911398 - 911385 - R 93 -5.3 -6.0427 | opp_overlap 911385 911378 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA M28_Spy0893 913084 - 911504 - | ABC transporter ATP-binding protein TERM 1164 913077 - 913090 + g 77 -8.1 -4.17537 | opp_overlap 913077 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA TERM 1165 913090 - 913077 - G 88 -8.1 -5.14965 | opp_overlap 913077 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA pdxK 913739 - 913182 - | hypothetical protein M28_Spy0895 914583 - 913717 - | pyridoxamine kinase TERM 1166 915039 - 915051 + G 73 -7.7 -3.93288 | opp_overlap 915038 CTAGAAGAACTAAGG GAAGC TTT GCTTC TTTACTTAGCTGAAA TERM 1167 915558 - 915574 + G 71 -3.7 -5.00616 | overlap 915561 GCTCTAGTTTTACCG TCAGGTT TAA AACCTTA TTTTTTAACCCAAAA TERM 1168 915561 - 915571 + G 73 -5.4 -4.61482 | overlap 915558 CTAGTTTTACCGTCA GGTT TAA AACC TTATTTTTTAACCCA M28_Spy0896 914673 - 915941 + | aminotransferase class-I TERM 1169 916273 - 916300 + T 100 -14.4 -3.62591 | opp_overlap 916273 ATAGTAGCAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC TERM 1170 916300 - 916273 - T 100 -14.4 -5.56568 | opp_overlap 916273 ATAGTAGCAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC rnhB 916705 - 916349 - | anaerobic ribonucleoside-triphosphate reductase TERM 1171 916873 - 916853 - R 100 -12.7 -5.81622 | ATAAAATTAAAAAAA GGATTGAGA ATA TCTCAATCC AAGGGGCATTCTTAA TERM 1172 916982 - 916967 - R 76 -7.6 -4.07568 | CTCCCCTGCGCAAAA GTGACT TTGC AGTCAC AATCGACTCATCGCA M28_Spy0898 918604 - 917027 - | cardiolipin synthetase TERM 1173 918662 - 918682 + r 100 -12.7 -4.72272 | opp_overlap 918656 918655 GGAAGAAAGGAGCGC TTGCTCGAA TTA TTCGAGCAA TTTTTCCTAAAAGAG fhs.1 920359 - 918689 - | formate--tetrahydrofolate ligase lplA 921506 - 920487 - | lipoate-protein ligase A M28_Spy0901 922434 - 921553 - | SIR2 family protein TERM 1174 922056 - 922038 - G 72 -4.6 -4.66833 | overlap 922039 CTTGAATGTGAAAAA TGTTATGA GGA TCATAACC AGCCACCCAAAAAGC M28_Spy0902 923239 - 922427 - | hypothetical protein TERM 1175 923123 - 923097 - G 71 -7.3 -3.89215 | gap 1, opp_overlap 923122, overlap 923100 TTTGATAAAGGCAAA GCAGGGCGCT GGTTAATG AGCGCCC-GC CACAAGTCTTGTCGC M28_Spy0903 923564 - 923232 - | glycine cleavage system H protein M28_Spy0904 924604 - 923606 - | luciferase-like monooxygenase M28_Spy0905 925800 - 924601 - | NADH-dependent flavin oxidoreductase yqiG M28_Spy0906 926648 - 925797 - | lipoate-protein ligase A TERM 1176 926786 - 926768 - H 85 -8.8 -4.2586 | opp_overlap 926765 926768 926768, overlap 926773 CCATATTAATACAAA CGCAAGAC AAT GTCTGGCG TCATTATCTTCCGTT TERM 1177 927213 - 927231 + G 82 -3.8 -5.40072 | overlap 927216 927217 CCGAAAATCTCATCT GCATCTGA TTA TCAGGTTC TTTTTTTGAAAAAAA dpfB 926829 - 927521 + | phosphopantothenate--cysteine ligase dfp 927514 - 928059 + | phosphopantothenoylcysteine decarboxylase TERM 1178 928532 - 928542 + G 78 -4 -5.20328 | ATACTATATTTGTAT TATC TGG GATA TTTATTTTTTTCGCG M28_Spy0909 928105 - 928686 + | transporter TERM 1179 928700 - 928732 + F 89 -8.7 -4.42851 | opp_overlap 928700 928703, overlap 928729 AATTAGCTTTCACAA TAACCGAGTTTTT CTCTTTT AAAAACTTGGTTA TTTTAACTTTCTTAC TERM 1180 930067 - 930040 - g 70 -2.7 -5.07486 | opp_overlap 930064 GAGTTTGAAGAAAAA CATAACCACAC CTATAT GTTTGGTTTTG AAGAAAGCTTCGGAT pgmA 928861 - 930579 + | phosphoglucomutase TERM 1181 930623 - 930645 + T 100 -9.2 -4.88711 | opp_overlap 930623 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1182 930645 - 930623 - T 100 -11.4 -5.00412 | opp_overlap 930623 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1183 930758 - 930717 - T 95 -8.8 -5.055 | opp_overlap 930717 GTAAGTCCCAAAAAA GCACCCTTAAAGCTAGAC CTAACT ATCTTGCTTTAGGAGTGC TGTTAAACCTCACTA M28_Spy0911 931765 - 930797 - | nucleoside transport system permease protein TERM 1184 931335 - 931309 - G 70 -3.1 -4.87803 | overlap 931318 TATTTTTAAAGAAAA TATCACCAATC ACAGG AATTTGTGATA AACCTGGGAAATCAA M28_Spy0912 932846 - 931755 - | nucleoside transport system permease protein TERM 1185 932651 - 932636 - GR 71 -6.2 -4.2679 | CAAGCGCTATTAAAA TCAATG GCCC CATTGA ACGGAATATTTCTCC M28_Spy0913 934362 - 932812 - | nucleoside transport ATP-binding protein TERM 1186 934416 - 934436 + r 90 -11.3 -3.53012 | opp_overlap 934412 934411, overlap 934370 CTATCACAAACTTTA CTGAGATAA AAA TTATCTCAG TTTAAAAAGAGCGAC TERM 1187 934466 - 934445 - R 80 -7.2 -4.62336 | opp_overlap 934445, overlap 934447 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1188 934445 - 934466 + r 75 -7.2 -4.09963 | opp_overlap 934445 934447 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1189 934464 - 934447 - R 79 -8.4 -3.92746 | opp_overlap 934445, overlap 934445 CTCAGTTTAAAAAGA GCGACC GACAAA GGTCGC GCTTCTTGTTCTTAA M28_Spy0914 935535 - 934483 - | nucleoside-binding protein TERM 1190 934617 - 934629 + g 82 -4.1 -5.39721 | CATAGACAGTTGTTT TTCCT CCA GGGAA TTTTTTATCTGCTAC cdd 936018 - 935629 - | cytidine deaminase TERM 1191 936380 - 936328 - R 88 -13.2 -3.12606 | gap 1, opp_overlap 936331 936334 GCATAGACTATTCAA CATG-GATTGATACAGATATTTGTA AAAT TATAAATATCTGTATCAATCACTTG ATCAACCTGTGATCG TERM 1192 936331 - 936377 + r 100 -15.7 -3.16191 | gap 1, opp_overlap 936328, overlap 936334 TAGACTATTCAACAT G-GATTGATACAGATATTTGTA AAAT TATAAATATCTGTATCAATCAC TTGATCAACCTGTGA TERM 1193 936334 - 936373 + r 100 -16.2 -2.56715 | opp_overlap 936328, overlap 936331 ACTATTCAACATGGA TTGATACAGATATTTGTA AAAT TATAAATATCTGTATCAA TCACTTGATCAACCT TERM 1194 936678 - 936630 - R 100 -17.9 -3.09516 | opp_overlap 936630 936635, overlap 936635 CTCTTTACTATTTAA GCAAACCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGGTTTGC TTTATACTTCTTAAT TERM 1195 936630 - 936678 + r 100 -20.1 -4.14859 | opp_overlap 936630 936635, overlap 936635 CTCTTTACTATTTAA GCAAACCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGGTTTGC TTTATACTTCTTAAT TERM 1196 936635 - 936673 + r 100 -12.8 -4.17789 | opp_overlap 936630 936635, overlap 936630 TACTATTTAAGCAAA CCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGG TTTGCTTTATACTTC TERM 1197 936673 - 936635 - R 93 -10.6 -3.94002 | opp_overlap 936635 936630, overlap 936630 TACTATTTAAGCAAA CCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGG TTTGCTTTATACTTC M28_Spy0916 937295 - 936669 - | 16S rRNA m(2)G 1207 methyltransferase TERM 1198 936763 - 936776 + g 84 -2.3 -5.81412 | overlap 936760 ATTTTTGCTTTAGCG CTAGG AGCT CCTTG TTTTTTTTGAATCAC TERM 1199 937320 - 937330 + H 79 -5.4 -5.08011 | overlap 937328 CTTTGAAATGGTTTA CAAG ACG CTTG TTTTTTAACAATTTT coaA 937530 - 938450 + | pantothenate kinase TERM 1200 938736 - 938711 - g 84 -6.8 -4.97405 | overlap 938726 938727 ATTCACAAAAACAAA GCAAGCCGCG ATAAAG CACGCCTTGC TGCAAAACTTGGCTA rpsT 938519 - 938752 + | 30S ribosomal protein S20 TERM 1201 938781 - 938770 - T 72 -5.8 -4.45151 | opp_overlap 938770 AATATCCAATGAAAA CTCC AGCT GGAG TTTTTTTATACGGTA TERM 1202 938770 - 938781 + T 88 -5.8 -5.626 | opp_overlap 938770 AATATCCAATGAAAA CTCC AGCT GGAG TTTTTTTATACGGTA TERM 1203 938879 - 938836 - T 72 -4.7 -4.70659 | gap 1, opp_overlap 938828 938847, overlap 938839 938841 938847 GTTGACAGTTAAAAA TAACTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTTAGCTTA TAATTTGACTTCAAA TERM 1204 938875 - 938839 - T 71 -5.3 -4.46215 | gap 2, opp_overlap 938847, overlap 938836 938841 938847 GACAGTTAAAAATAA CTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTT-AG CTTATAATTTGACTT TERM 1205 938868 - 938847 - T 81 -8 -4.26634 | gap 1, opp_overlap 938847, overlap 938841 938839 938836 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAAT TERM 1206 938847 - 938868 + T 86 -8 -4.78752 | gap 1, opp_overlap 938841 938839 938836 938847 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAAT ciaH 940187 - 938877 - | sensor protein ciaR 940854 - 940180 - | transcriptional regulatory protein TERM 1207 941187 - 941165 - R 89 -7 -5.31275 | opp_overlap 941160 GCTCACTACAAAAAA GAGCTGGAAA GTC CTCCCAACTC TTTTGCTTATGGTCT pepN 943798 - 941201 - | alanine aminopeptidase TERM 1208 942373 - 942353 - G 89 -5.5 -5.4505 | opp_overlap 942353 TTTTCCAATAAAAAA TTGTTTTTG ACT CAAAATCAA TTGATCGTTTTCAAG TERM 1209 943780 - 943799 + g 72 -9.4 -3.0218 | opp_overlap 943780 943778 943770, overlap 943782 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT TERM 1210 943799 - 943780 - G 73 -9.4 -3.26546 | opp_overlap 943780 943782, overlap 943778 943770 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT M28_Spy0922 944004 - 943795 - | hypothetical protein TERM 1211 943907 - 943897 - GR 76 -6.8 -4.386 | opp_overlap 943899 943900 943902, overlap 943900 CAATTTCGTATAAAA CCAG GGA CTGG CAAGCTGTTTCCCAG phoU 944596 - 943943 - | phosphate transport system protein pstB 945425 - 944664 - | phosphate transport ATP-binding protein pstB2 946238 - 945435 - | phosphate transport ATP-binding protein pstA 947141 - 946254 - | phosphate transport system permease protein pstC 947979 - 947131 - | phosphate transport system permease protein TERM 1212 947746 - 947736 - G 74 -4.6 -4.87665 | TTTCAGTCATAAAAA CGGC TGC GCCA ATGGCAAATGGGGTG TERM 1213 947911 - 947921 + g 73 -5.4 -4.56597 | opp_overlap 947896 947911, overlap 947897 947896 CTTGTCAACAAAGAA GGTT GAC AACC TTTTTGAGCAACGAA pstS 948942 - 948076 - | phosphate-binding protein TERM 1214 949026 - 949038 + r 89 -6.3 -5.65927 | TAACATATCTACCTA TGCTT TGA AAGCA TTTTTTCTTTAAATA M28_Spy0929 950391 - 949081 - | 16S rRNA m(5)C 967 methyltransferase TERM 1215 950129 - 950108 - G 80 -10.1 -3.69618 | opp_overlap 950107, overlap 950106 GCCAAGTCTAAAACA CGACTCCCC TTTT GAGGAGCCG CTACTTGTGCCACCA M28_Spy0930 951203 - 950394 - | myo-inositol-1(or 4)-monophosphatase TERM 1216 950968 - 950979 + gr 70 -4.4 -4.65916 | CCTTGATTAATGGGG TGAC GAAC GTCA TTTTCTTCAGCTAAA M28_Spy0931 951462 - 951172 - | hypothetical protein TERM 1217 951414 - 951383 - GR 100 -12.4 -5.09225 | opp_overlap 951381 ACTTTATTCAAAAAA TGAAGCACTGAGGA TATT TCTTCAGTGCTCCA ACTTAAGTCAAGTGG spxA 951856 - 951452 - | transcriptional regulator Spx mreA 952831 - 951899 - | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 1218 951971 - 951985 + g 72 -4.3 -4.72846 | TCTATCAGTCAAATC TTCGA TTCCC TCGAA TTTTTCCATGTCTCG truB 953744 - 952860 - | tRNA pseudouridine synthase B TERM 1219 953698 - 953714 + g 80 -2.2 -5.54192 | opp_overlap 953689, overlap 953690 953689 953689 AAAACTGCGTCATGA GAGGTC ATGCC GGCTTC TTTTTTTAAATTAAT M28_Spy0935 955200 - 953860 - | hypothetical protein TERM 1220 955266 - 955244 - R 74 -3.4 -5.23316 | TATTATAGCAAAAAA GCTCAGGA AGTTAAG TCCCAAGC TGTCATAGATAAGAA M28_Spy0936 956253 - 955297 - | integral membrane protein TERM 1221 955887 - 955876 - G 73 -2.2 -5.24531 | AGTCCCTACAAAAAA GAGC ATAA ACTC ATTCGATAAAATAGG TERM 1222 956219 - 956202 - G 73 -5.5 -4.4959 | GGTAAGCAATTAAAA TGGCAAC AATG GTAGCCA AGGTCATTTTTAATG M28_Spy0937 956860 - 956264 - | type I restriction-modification system specificity subunit M28_Spy0938 959588 - 956952 - | ABC transporter permease protein TERM 1223 958184 - 958194 + g 73 -5.4 -4.62471 | ACTGAGCTGCATTGA GGAA TAA TTCC TTTTTGACAATTAAG TERM 1224 959564 - 959575 + g 76 -4.4 -5.02323 | opp_overlap 959564 TAGCTCTCAAAATAT CCTT CCAT AAGG TTTTCTTTATCATAC M28_Spy0939 960316 - 959603 - | ABC transporter ATP-binding protein M28_Spy0940 960422 - 960964 + | TetR family transcriptional regulator M28_Spy0941 961104 - 960961 - | hypothetical protein TERM 1225 961086 - 961106 + g 77 -9.8 -3.52111 | opp_overlap 961086 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCG TERM 1226 961106 - 961086 - G 100 -9.8 -5.85737 | opp_overlap 961086 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCG M28_Spy0942 961748 - 961107 - | NAD-dependent K+ or Na+ uptake system component TERM 1227 961868 - 961849 - R 100 -12.2 -4.8543 | TAACCGTGACAAAAA GAGCTGGT AAAT ACCAGCTC AAACTTATCACCACT M28_Spy0943 962402 - 961911 - | Gls24 family general stress protein M28_Spy0944 962610 - 962410 - | hypothetical protein M28_Spy0945 963190 - 962651 - | Gls24 family general stress protein M28_Spy0946 963391 - 963203 - | hypothetical protein M28_Spy0947 964013 - 963402 - | hypothetical protein M28_Spy0948 964298 - 964050 - | integral membrane protein TERM 1228 964618 - 964652 + r 100 -13.1 -6.04419 | opp_overlap 964618 AGAAATCTAAAAAAA TGAGCTTCCTACT CACTTATAT AGTAGGAAGCTCA TTTTTTTCTTATTTT TERM 1229 964652 - 964618 - R 100 -13.1 -5.59564 | opp_overlap 964618 AGAAATCTAAAAAAA TGAGCTTCCTACT CACTTATAT AGTAGGAAGCTCA TTTTTTTCTTATTTT pcrA 966979 - 964661 - | DNA helicase II M28_Spy0951 967517 - 967347 - | hypothetical protein TERM 1230 967789 - 967800 + GH 79 -3.6 -5.44119 | AGCGCTCTTTTGGAT GTGG GTTG CCGC TTTTTTTGGAATGGC M28_Spy0950 967508 - 968830 + | Na(+)-linked D-alanine glycine permease TERM 1231 968872 - 968892 + FH 77 -3.2 -5.4505 | opp_overlap 968890, overlap 968858 968890 ACCTAGTCTTCTTCT GCCAAGTT CAAGA AGCTAGGC TTTTTTCTTAAGCCC M28_Spy0952 968950 - 970185 + | cobalt-zinc-cadmium resistance protein czcD TERM 1232 970277 - 970310 + T 86 -6.1 -5.42259 | opp_overlap 970277 AAATAGTTAAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC TERM 1233 970310 - 970277 - T 93 -8.3 -5.54264 | opp_overlap 970277 AAATAGTTAAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC cfa 971328 - 970555 - | cAMP factor TERM 1234 971623 - 971611 - R 86 -2.7 -5.80364 | opp_overlap 971612, overlap 971612 971622 AGTTTAATAAAAAAA CCTTA AAC TAAGA TTTTTATTAAATCAT TERM 1235 971660 - 971638 - R 80 -10.6 -2.96873 | overlap 971635 ATTTTTATTAAATCA TCTAGCTGAC TTT GTCTGCTAGA TCTCACCTGTTAAAC TERM 1236 971683 - 971694 + r 77 -5.8 -4.71482 | opp_overlap 971683 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT TERM 1237 971694 - 971683 - R 93 -5.8 -5.95539 | opp_overlap 971683 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT M28_Spy0954 972534 - 971698 - | histidine-binding protein TERM 1238 972102 - 972128 + g 91 -6 -5.40072 | overlap 972093 972104 ACACTTTATGTTTCA TATCTGATATTG TTT TAATATCAGATC TTTTTTTGACAACAA TERM 1239 972104 - 972126 + g 85 -8.6 -4.34482 | overlap 972102 ACTTTATGTTTCATA TCTGATATTG TTT TAATATCAGA TCTTTTTTTGACAAC M28_Spy0955 973179 - 972550 - | histidine transport ATP-binding protein P TERM 1240 973039 - 973006 - G 71 -6.7 -4.13767 | TTCGCCATTGTAAAA GACTTGACCTGAATC AATA GATTCAAGACCAGCC AACATCCGTAAGAGT TERM 1241 973124 - 973136 + g 72 -3.4 -5.00884 | opp_overlap 973124 973127 973134 ACGGTTAGATTAAAG CCAT CAAAA ATGG TTTTTTGACCAAACT M28_Spy0956 973830 - 973189 - | histidine transport system permease protein M TERM 1242 973928 - 973906 - R 70 -4.1 -4.82901 | opp_overlap 973906 973907 973911, overlap 973908 973911 GTTTTTTTATAAAAA TACAACCAG ATCAG CTGGTTGCG TATTATTATTAGATT TERM 1243 973926 - 973908 - R 82 -8.9 -4.03995 | opp_overlap 973907 973906 973911, overlap 973906 973911 TTTTTTATAAAAATA CAACCAG ATCAG CTGGTTG CGTATTATTATTAGA M28_Spy0957 974272 - 973937 - | PhnA TERM 1244 974427 - 974449 + r 78 -10.6 -2.66979 | opp_overlap 974427, overlap 974426 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT TERM 1245 974449 - 974427 - R 100 -12.8 -5.61881 | opp_overlap 974427 974426 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT glmS 976282 - 974468 - | D-fructose-6-phosphate amidotransferase TERM 1246 976466 - 976441 - R 100 -9.1 -5.71983 | opp_overlap 976441 CTAATTATAAAAAAA GTAGAGTAGCC TGAC AACTACTCTAC TTCTACAAATCCAAA sipC 977015 - 976458 - | signal peptidase I TERM 1247 977208 - 977186 - R 100 -10.7 -5.21709 | opp_overlap 977186 TTTGATATCAAAAAA GGTTAGAAG CTTGC CTTCTAACC TTTAGGTAAATAGTT TERM 1248 977186 - 977208 + r 89 -10.7 -3.67564 | opp_overlap 977186 TTTGATATCAAAAAA GGTTAGAAG CTTGC CTTCTAACC TTTAGGTAAATAGTT pyk 978735 - 977233 - | pyruvate kinase TERM 1249 978375 - 978395 + g 75 -2.5 -5.26316 | overlap 978376 978377 GAGTTGATTGAATAC CTTGTGTAG TCG CTACACGGA TTTTTTCTCCAGTAA pfkA 979811 - 978798 - | 6-phosphofructokinase dnaE 983001 - 979891 - | DNA polymerase III DnaE TERM 1250 983341 - 983313 - g 73 -7.6 -3.9777 | gap 1 GTGAATATGCAGAAA TCGCA-GGTGTTA ATCC TAACACCATGCAA CGAGCGTTTACAGAA M28_Spy0963 983096 - 983557 + | GntR family transcriptional regulator TERM 1251 984138 - 984148 + G 73 -5.4 -4.63218 | CATTGAACCTATCCT TGAC GAA GTCA TTTTCTTGAAACAAG M28_Spy0964 983557 - 984255 + | ABC transporter ATP-binding protein M28_Spy0965 984265 - 985050 + | ABC transporter permease protein TERM 1252 985058 - 985101 + T 100 -16.5 -4.75308 | opp_overlap 985051 985060 TACAGTAAGCGTTAA GACTTTCTTTTAAACTATG ACACAC TATAGTTTAAAAGAAAGTC TTTTTCAGTGTTCAT TERM 1253 985099 - 985060 - T 87 -12.6 -3.06737 | opp_overlap 985058, overlap 985051 CAGTAAGCGTTAAGA CTTTCTTTTAAACTAT GACACACT ATAGTTTAAAAGAAAG TCTTTTTCAGTGTTC TERM 1254 985154 - 985131 - T 100 -6.8 -5.99154 | gap 1, opp_overlap 985131 TAGTAAATAAAAAAA CCGTCTTCCAT CAA ATAGAAG-CGG TTTATCAAATTAACA M28_Spy0966 985791 - 985177 - | putative membrane-associated alkaline phosphatase TERM 1255 985527 - 985517 - G 85 -6.8 -5.04733 | TAATTATAAATAAAA CCTG TTA CAGG GCCAAAGATTAAAAA TERM 1256 986264 - 986279 + r 93 -4.7 -5.98675 | opp_overlap 986264 CATAACTTACTAAAA CCTTG TTACAT CAAGG TTTTTTCTTTTTGTC M28_Spy0967 986570 - 986382 - | phage protein TERM 1257 986845 - 986830 - g 79 -5.4 -4.9138 | ATTATCTAAACAAAA GGCAAG TTTG CTTACC GCTGTTTTACTGTTA spd1 986810 - 987568 + | streptococcal phage DNase1 TERM 1258 988341 - 988327 - g 70 -5.8 -4.45168 | TTTGCAAAATATAAA GATAAT AGA ATTATC AATATGAAGAACTTT speC 987679 - 988386 + | exotoxin type C precursor TERM 1259 988400 - 988432 + T 77 -9.2 -3.31726 | opp_overlap 988405, overlap 988405 AATTCATCATACACA AAAAACCGCCCAGA AATTA TCTGAGCGGTTTTG TCTTATCTAAAGGAG TERM 1260 988427 - 988405 - T 100 -11.3 -5.43414 | opp_overlap 988400 988405 ATCATACACAAAAAA CCGCCCAGA AATTA TCTGAGCGG TTTTGTCTTATCTAA TERM 1261 988405 - 988427 + T 100 -9.1 -4.76963 | opp_overlap 988405, overlap 988400 ATCATACACAAAAAA CCGCCCAGA AATTA TCTGAGCGG TTTTGTCTTATCTAA M28_Spy0970 989796 - 988462 - | phage-associated lysin TERM 1262 989530 - 989517 - G 81 -6.7 -4.78107 | CATCACTATCAAAAA TAGCC ACAT GGCTA TACGGTGTAACACCT M28_Spy0971 990093 - 989908 - | phage protein M28_Spy0972 990386 - 990090 - | phage protein TERM 1263 990268 - 990296 + g 85 -6.8 -5.01732 | gap 1 GAGTCCTTGAGTTGA GCCATGGCAAACT CATT AGCTT-CCATGGC TTTTTTAAAGGGATT M28_Spy0973 991014 - 990397 - | phage protein M28_Spy0974 991178 - 991017 - | phage protein M28_Spy0975 993087 - 991192 - | phage protein TERM 1264 992561 - 992571 + g 71 -6.8 -4.09864 | CCGATTTTATCATTG GCCA TTG TGGC TTTTAGCCCCTCAAT M28_Spy0976 993427 - 993098 - | phage protein TERM 1265 993278 - 993267 - G 74 -4.4 -4.86001 | opp_overlap 993267 ACGATTTTATAAAAA GGAT AAAT ATCC AATTTTTTCCCAGCG TERM 1266 993365 - 993343 - G 82 -10.8 -3.5947 | opp_overlap 993340 AACGCTGATAGACAA TCGTATTATT ACA AATAATACGA TCAATCGTTTTGTTA M28_Spy0977 994628 - 993414 - | phage protein TERM 1267 993574 - 993550 - G 76 -10.8 -2.63596 | opp_overlap 993548 TGTGACTGTATATCA GCTTGTCTGA GATAG CCAGACAAGC GCTCATTAAGACCAG TERM 1268 994099 - 994117 + g 73 -10.4 -2.80975 | overlap 994098 ACACGCTTGTGATTT GTGATAGT AAT ACTATCAC CTTTAGGTCCTGACT TERM 1269 994290 - 994310 + g 77 -8.3 -3.82218 | overlap 994302 GTCGTCTGATAGTTT GATAGTGAG TGT CTCACCATC TTTGGTGATGTCGGT M28_Spy0978 996679 - 994625 - | phage protein TERM 1270 994742 - 994754 + g 83 -9.1 -4.03234 | AAGAGCTAATTCCTG CGCCT CTG AGGCG TTTATCTCCACAGAC M28_Spy0979 997455 - 996676 - | phage protein TERM 1271 997067 - 997099 + g 72 -9.4 -3.06686 | gap 1, overlap 997064 TCGTTAGAAACTTCT TCTGGGACATCTTTA GATT TAAAGATG-CCTAGA TAATTTCTGTCAGGT TERM 1272 997507 - 997474 - R 100 -9.1 -5.00884 | gap 1, opp_overlap 997478, overlap 997478 ACTCCTTTCAAAAAA CTAA-GAGAAACAACT ACC AGCTGCTTCTCTTTAG TCTGATTTTTTCAAT TERM 1273 997502 - 997478 - R 87 -10.1 -3.93166 | opp_overlap 997478, overlap 997474 CTTTCAAAAAACTAA GAGAAACAACT ACC AGCTGCTTCTC TTTAGTCTGATTTTT M28_Spy0980 1001122 - 997487 - | phage protein TERM 1274 998522 - 998507 - G 73 -6.8 -4.258 | gap 1, opp_overlap 998517 998521, overlap 998516 998517 TGATTGAGCAACAAA CGC-GGC AAA GCCAGCG CCAGCTTGTGCTAGA TERM 1275 998517 - 998542 + g 74 -8.9 -3.52995 | opp_overlap 998507 998516 998517, overlap 998521 ACAAACGCGGCAAAG CCAGCGCCAGC TTGT GCTAGAGCTGG TGTTATTGTCATTAG TERM 1276 998542 - 998517 - G 77 -11.1 -2.75562 | opp_overlap 998517 998521, overlap 998507 998516 ACAAACGCGGCAAAG CCAGCGCCAGC TTGT GCTAGAGCTGG TGTTATTGTCATTAG M28_Spy0981 1001460 - 1001137 - | phage protein M28_Spy0982 1001906 - 1001508 - | phage protein TERM 1277 1001908 - 1001888 - G 100 -9.8 -5.26119 | opp_overlap 1001873 CCTTTAAAAATAAAA GGTTGGAT ACTAA ATCCAACC TAACCGTTACATCTC M28_Spy0983 1002583 - 1001915 - | phage protein M28_Spy0984 1002982 - 1002593 - | phage protein TERM 1278 1002769 - 1002742 - G 74 -4.1 -5.0133 | opp_overlap 1002744, overlap 1002744 TAGCTTGCGAAAAAA TAGCAGATGCC ATGTCA GACACCTGCTT CCGTTTTTTCTGCAC TERM 1279 1002767 - 1002744 - G 71 -6.7 -4.13561 | opp_overlap 1002744, overlap 1002742 GCTTGCGAAAAAATA GCAGATGCC ATGTCA GACACCTGC TTCCGTTTTTTCTGC M28_Spy0985 1003344 - 1002979 - | phage protein M28_Spy0986 1003633 - 1003325 - | phage protein TERM 1280 1003394 - 1003363 - G 76 -2.4 -5.36441 | gap 2, overlap 1003368 CTTCCAGATAAAAAA CAATAGCGCCAAGC TTATTT GCCTG-CGCT-TTG TATCTCTTGCCCTCA TERM 1281 1003519 - 1003539 + g 80 -11.3 -2.84298 | overlap 1003516 CCATGCCCATGTCCA TCACAAAAC AAG GTTTTGTGA TACTTATGACCTCTG M28_Spy0987 1003995 - 1003630 - | phage protein TERM 1282 1003853 - 1003832 - G 95 -11.6 -4.83677 | opp_overlap 1003831 1003830 1003828 AAAACAAAACTAAAA GCGCTGTC TATTTC GACAGCGC CATATTTAGCTTTAA M28_Spy0988 1004239 - 1003997 - | phage protein TERM 1283 1004176 - 1004153 - G 77 -6 -4.56775 | overlap 1004154 ACCCTCTGTCAAAAA CTCTACTCGG TCGC CCGAGTAAAT ATCGCCGACTTCGTA TERM 1284 1004175 - 1004154 - G 75 -9.5 -3.33744 | overlap 1004153 CCCTCTGTCAAAAAC TCTACTCGG TCGC CCGAGTAAA TATCGCCGACTTCGT M28_Spy0989 1005331 - 1004249 - | phage protein TERM 1285 1005133 - 1005160 + g 70 -7.8 -3.70902 | gap 1, overlap 1005125 TCATACGGTCACGTA GTGGCA-CTTTTG TAT CAAAGGCTGCCGC TTTAAGTGTGACAGG M28_Spy0990 1005714 - 1005334 - | phage protein M28_Spy0991 1006266 - 1005724 - | phage protein TERM 1286 1006357 - 1006344 - R 89 -3.1 -5.9218 | overlap 1006345 GACATAATAAAAAAA CCGTA TTCC TACGA CTTAGTTTGATTCTA M28_Spy0992 1006667 - 1006401 - | phage protein M28_Spy0993 1006984 - 1006670 - | phage protein TERM 1287 1007038 - 1007015 - R 89 -6.6 -5.60993 | opp_overlap 1007015 1007017 TTGGGTACAAAAAAA GACGGGCGAC CACA GTCTTCCGTC TATAATAATATGTTT M28_Spy0994 1007239 - 1007054 - | phage protein TERM 1288 1007179 - 1007203 + g 100 -5.7 -5.84011 | opp_overlap 1007182, overlap 1007182 TTGCACTAAAGTCAG GAATTGGATGA GAT TCATCCCACTC TTTTTGTTTTTTATT M28_Spy0995 1008805 - 1007243 - | phage protein M28_Spy0996 1010288 - 1008786 - | portal protein M28_Spy0997 1011613 - 1010300 - | terminase large subunit TERM 1289 1011350 - 1011322 - GR 74 -5.3 -4.82855 | CATTAAACTTAAAAA GGTGTGTAACC TTTAATT GATTACACGCC CATTTAAAATCGGTA TERM 1290 1011527 - 1011510 - GR 70 -3.5 -4.86001 | ACTACTCGATAAAAA TTTTTAG AGCG CCAAAAA GCGCCATAACCTATA M28_Spy0998 1012130 - 1011585 - | phage terminase small subunit M28_Spy0999 1012313 - 1012729 + | phage protein TERM 1291 1012730 - 1012747 + T 88 -7.7 -5.1101 | opp_overlap 1012730 1012732 1012733, overlap 1012725 AAATTACAAGCATAA GAGCCAC TGTT GTGGTTC TTTTTTACATAATAA TERM 1292 1012866 - 1012848 - T 100 -9.6 -5.58179 | opp_overlap 1012848 1012847 GACCATAACAAAAAA GTCACCAC AAT GTGATGAC CTATTTATTTTTGAA M28_Spy1000 1014261 - 1013347 - | phage protein M28_Spy1001 1014533 - 1014312 - | phage protein M28_Spy1002 1015273 - 1014839 - | ArpU family phage encoded transcriptional regulator TERM 1293 1015324 - 1015342 + r 82 -4.5 -5.54907 | overlap 1015318 AAATTTAACCAAGGG GGCGTTC CGTGT GGACGTC TTTTTGTTTTGTGGA M28_Spy1003 1016216 - 1015722 - | phage protein M28_Spy1004 1016904 - 1016206 - | phage protein M28_Spy1005 1017124 - 1016840 - | phage protein M28_Spy1006 1017315 - 1017121 - | phage protein M28_Spy1007 1017527 - 1017288 - | phage protein M28_Spy1008 1017769 - 1017524 - | phage protein TERM 1294 1017587 - 1017601 + g 80 -7.8 -4.41047 | ATTTGGCAATATTCT GCGTTC TAA GAGCGC TTTTAATTGCCAAGT M28_Spy1009 1018122 - 1017766 - | phage protein M28_Spy1010 1018390 - 1018106 - | phage protein M28_Spy1011 1019291 - 1018410 - | phage protein TERM 1295 1019420 - 1019400 - R 72 -4.9 -4.65722 | CTATATATAAATAAA TAATTAATA AAT CATTAATTA GACTTATTGTTTGTT M28_Spy1012 1021101 - 1019548 - | phage protein TERM 1296 1020447 - 1020473 + g 73 -5.9 -4.5265 | overlap 1020449 ACTCAAGATATTCTT CTGCAATAGAC TTACT GTTTATTGCTG TTTTGTAGTCTACTT TERM 1297 1020449 - 1020471 + g 71 -7.1 -3.8637 | overlap 1020447 TCAAGATATTCTTCT GCAATAGAC TTACT GTTTATTGC TGTTTTGTAGTCTAC M28_Spy1013 1021601 - 1021119 - | phage protein M28_Spy1014 1022973 - 1021606 - | phage DNA/RNA helicase TERM 1298 1022484 - 1022497 + g 72 -4.5 -4.68539 | overlap 1022485 CGTCAATCGATTTAT TGGAG TAAT CTCCG TTTTGTACTTTTAAT M28_Spy1015 1023728 - 1023045 - | phage protein M28_Spy1016 1024009 - 1023725 - | phage protein M28_Spy1017 1024200 - 1024006 - | phage protein M28_Spy1018 1024529 - 1024200 - | phage protein M28_Spy1019 1024747 - 1024610 - | phage protein M28_Spy1020 1025040 - 1024744 - | phage protein TERM 1299 1025093 - 1025110 + r 100 -7.7 -5.9218 | TAAAATTTGTTTTGA GTCCGAT TGCC GTCGGAC TTTTTTTGTTATCTA M28_Spy1021 1025325 - 1025119 - | phage protein M28_Spy1022 1025471 - 1025710 + | phage protein TERM 1300 1025741 - 1025766 + F 75 -4.7 -4.9792 | overlap 1025743 CGGTTTTTATCAGTT CAGGGTCTATC TTAT GATAGGCTCTC TTTTTCTCTCCGCTA TERM 1301 1025743 - 1025764 + F 75 -7.3 -4.11141 | overlap 1025741 GTTTTTATCAGTTCA GGGTCTATC TTAT GATAGGCTC TCTTTTTCTCTCCGC M28_Spy1023 1025860 - 1026069 + | phage protein TERM 1302 1026161 - 1026178 + F 89 -7 -5.27399 | opp_overlap 1026161, overlap 1026172 TCTTCTGATAAGTAA CCTGCT CTTTGT AGCAGG TTTTTTGCTATCTTC M28_Spy1024 1026274 - 1026837 + | phage protein TERM 1303 1026871 - 1026887 + TF 77 -3 -5.56263 | gap 1, opp_overlap 1026871, overlap 1026865 TAAAATTAAGATAAG TGCTGCC GTTA GG-AGCA TTTTTCTTTTATCCT TERM 1304 1026921 - 1026937 + TF 84 -5.9 -5.27335 | TAGTGTTGTACACTT TATCTCG TTT TGAGATA TTTTTGTTTAAAAAA M28_Spy1026 1027172 - 1026945 - | phage protein M28_Spy1025 1027135 - 1027632 + | phage protein M28_Spy1027 1027830 - 1027621 - | phage protein M28_Spy1028 1027884 - 1028483 + | phage protein TERM 1305 1028497 - 1028509 + T 86 -6.2 -5.56263 | overlap 1028495 AACTCCCCCCTTTCC GCCC CTTGT GGGC TTTTTATTTTGTAAT M28_Spy1029 1028671 - 1028513 - | phage protein TERM 1306 1028961 - 1029002 + H 77 -8.9 -3.61244 | gap 1, opp_overlap 1028967, overlap 1028965 1028967 ATAGTCACCAATTTC GAGGAACCCTTTAGCAAGCT CGC ACCTTGTTAAGGGG-TCTTC TTCGTTTGTGAAGTC TERM 1307 1028965 - 1028999 + H 73 -7.2 -3.93401 | opp_overlap 1028967, overlap 1028961 1028967 TCACCAATTTCGAGG AACCCTTTAGCAAGCT CGC ACCTTGTTAAGGGGTC TTCTTCGTTTGTGAA TERM 1308 1028967 - 1028997 + H 82 -9.8 -3.54701 | opp_overlap 1028967, overlap 1028965 1028961 ACCAATTTCGAGGAA CCCTTTAGCAAGCT CGC ACCTTGTTAAGGGG TCTTCTTCGTTTGTG TERM 1309 1029148 - 1029165 + H 83 -11.3 -2.86271 | opp_overlap 1029130, overlap 1029145 1029150 ACCCCGTTAGGGGGA GAGGGCT TCTT AGCCCTC TAATTATCCTCACCA TERM 1310 1029204 - 1029253 + H 74 -3.2 -5.28942 | overlap 1029246 AGTAGTGAATCTTAA GCTTAAAC-CAAAGAATCTTGA TTTCGACT TCTAG-TTCTTTGTGTTTAGGC TTTTTGTTTAGCCTA TERM 1311 1029364 - 1029376 + H 93 -3.4 -6.01187 | GTCAACTATTTTTTA TCTC TTTTT GAGA TTTTTTTATTTACTT M28_Spy1030 1029438 - 1030181 + | phage transcriptional repressor TERM 1312 1030519 - 1030508 - g 80 -4.4 -5.27779 | opp_overlap 1030508 GCTAACATCAAAAAA CTCT AAAG AGAG TCTGTCAATTAACAA TERM 1313 1030894 - 1030876 - g 74 -3.9 -5.01811 | TCAGTAAACTAAAAA TCGCTAA ACCAA TTAACGA TCTTGACCCTGTCGG M28_Spy1031 1030194 - 1031003 + | phage protein M28_Spy1032 1031212 - 1031060 - | phage protein TERM 1314 1031087 - 1031112 + g 100 -8.3 -5.79595 | opp_overlap 1031107 GTCCAACTCCACTGT GAGCGCCTGTT TTCG AATAAGCGCTC TTTTTTGTTTTAAAA TERM 1315 1031177 - 1031138 - G 100 -6.6 -6.12458 | gap 2, overlap 1031107 TAAAAAAATAAAAAA GCCCCACGCTCTCAAAGT TTGGCG ACTCT--GAGCGTGAGGC AAGACAGTATAAGAA TERM 1316 1031491 - 1031479 - g 76 -3.3 -5.28683 | ACGAATATGAAAAAA CTGTC CAG GGCAG TACCTACTTAAAAAC M28_Spy1033 1031217 - 1032341 + | DNA integration/recombination/invertion protein TERM 1317 1032436 - 1032451 + F 93 -4.7 -5.98675 | opp_overlap 1032436 CATAACTTACTAAAA CCTTG TTACAT CAAGG TTTTTTCTTTTTGTC M28_Spy1034 1032473 - 1032586 + | hypothetical protein TERM 1318 1032597 - 1032655 + F 75 -7.2 -4.18303 | gap 3, opp_overlap 1032602 1032612, overlap 1032600 1032605 1032606 1032607 TCTAAAAAAAAGAAT CAAAATAGTA-CTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGCTA-TATCTTG TTTATAATTTATGAT TERM 1319 1032650 - 1032602 - f 100 -9.8 -4.72772 | gap 1, opp_overlap 1032600 1032597 1032605 1032606 1032607, overlap 1032612 AAAAAAGAATCAAAA TAGTACTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGCTATA TCTTGTTTATAATTT TERM 1320 1032605 - 1032648 + F 81 -9.9 -3.39301 | gap 2, opp_overlap 1032602 1032612, overlap 1032600 1032597 1032606 1032607 AAAGAATCAAAATAG TA-CTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGCTA TATCTTGTTTATAAT TERM 1321 1032606 - 1032646 + F 83 -10.6 -3.25162 | gap 1, opp_overlap 1032602 1032612, overlap 1032605 1032600 1032597 1032607 AAGAATCAAAATAGT ACTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAGC TATATCTTGTTTATA TERM 1322 1032607 - 1032645 + F 93 -14.1 -2.54013 | gap 1, opp_overlap 1032602 1032612, overlap 1032606 1032605 1032600 1032597 AGAATCAAAATAGTA CTA-AATTCCCCATAGCG CATG CGCTATGGGGAATCATAG CTATATCTTGTTTAT TERM 1323 1032639 - 1032612 - f 100 -18.6 -3.88442 | opp_overlap 1032607 1032606 1032605 1032600 1032597, overlap 1032602 CAAAATAGTACTAAA TTCCCCATAGCG CATG CGCTATGGGGAA TCATAGCTATATCTT M28_Spy1035 1032704 - 1033324 + | hypothetical protein TERM 1324 1033381 - 1033352 - T 100 -13.1 -4.57837 | opp_overlap 1033352 ATATTTTGCTAAAAA GATTGATTTCGAT GTAC ACCGAAATCAATC TTTTTATATCATTTT TERM 1325 1033352 - 1033381 + T 100 -10.9 -5.07941 | opp_overlap 1033352 ATATTTTGCTAAAAA GATTGATTTCGAT GTAC ACCGAAATCAATC TTTTTATATCATTTT TERM 1326 1033498 - 1033528 + T 100 -14.2 -4.06502 | opp_overlap 1033498 AAGTCTGAAGAAAAA TCATAAGACAGCAG AAA CTACTGTCTTATGA TTTAGTTTAAGCATG TERM 1327 1033528 - 1033498 - T 100 -16.4 -5.08088 | opp_overlap 1033498 AAGTCTGAAGAAAAA TCATAAGACAGCAG AAA CTACTGTCTTATGA TTTAGTTTAAGCATG glgP 1035845 - 1033581 - | glycogen phosphorylase TERM 1328 1034906 - 1034928 + g 73 -5.6 -4.56775 | opp_overlap 1034905 1034903 1034906, overlap 1034908 CTTCTGCAAGAATAG TGTGGTTAGT GTA ACCAACCATA TTTTTCACAACAGCT malM 1037373 - 1035880 - | 4-alpha-glucanotransferase TERM 1329 1037476 - 1037454 - R 82 -4.2 -5.40474 | opp_overlap 1037444 AGTTTCCTAAAAAAA GTAACATTCC TTA AAAATGCTAC TTTTTTTTGCTCTTA malR 1038583 - 1037489 - | LacI family transcription regulator TERM 1330 1037555 - 1037545 - G 78 -4 -5.28166 | TAAAAGGAACAAAAA TAGT CTG ACTA AGATTCTGTTCATTG TERM 1331 1038079 - 1038094 + g 79 -4.8 -5.0133 | opp_overlap 1038064 1038081 TGACAAATGGTAAGT TATTTG TCAT CAAATA TTTTTTGACAGGATC TERM 1332 1039175 - 1039156 - g 79 -8.6 -4.0162 | opp_overlap 1039155 1039156 GGTGCACAGTACAAA GGGAAAAC ATAT GCTTTCCC ATTTGGTATTGAATC malE 1038751 - 1039998 + | maltose/maltodextrin-binding protein TERM 1333 1040150 - 1040205 + F 95 -13 -3.78775 | opp_overlap 1040170, overlap 1040149 TTTTTGTTTTACTAG TAGCTTAGTGCTACTTAAATTTTTAA CTCT TTAAAAGTTTACGTAACACTTAGCTA TTTCATCCTAACAAG TERM 1334 1041156 - 1041168 + G 79 -4.8 -5.01497 | opp_overlap 1041156 AATCGGCTTGATTAA TGGC TCACT GCCA TTTTTATCTGATCCT malF 1040272 - 1041633 + | maltose transport system permease protein TERM 1335 1041707 - 1041720 + G 71 -6.7 -3.99775 | overlap 1041698 AATCATTTGGCTCTT CCCAA TCGC TTGGG TTATTCTTACTAGCT malG 1041633 - 1042469 + | maltose transport system permease protein TERM 1336 1042486 - 1042512 + F 100 -9.5 -4.7497 | opp_overlap 1042486 TTACAACATACCAAA CCTTCTAAGGG CAAGC CCTTTAGGAGG TTTTTGATAAATAAG TERM 1337 1043093 - 1043127 + G 70 -2.8 -5.03314 | opp_overlap 1043093 1043095 1043113, overlap 1043095 TCTTTCAAATTAATA CAGATTATGCTGCTCT CAA AGATCAGGCTAATCAG TTTTTTAAGGATGAA M28_Spy1042 1042624 - 1043424 + | LacI family transcription regulator TERM 1338 1043470 - 1043497 + T 100 -11.4 -5.24989 | opp_overlap 1043470 CCTTGTAACTCAAAA CCTTGCCTCTTT AGAT AAAGAAGCAAGG TTTTTTGATGTCTAA TERM 1339 1043497 - 1043470 - T 100 -13.6 -4.27316 | opp_overlap 1043470 CCTTGTAACTCAAAA CCTTGCCTCTTT AGAT AAAGAAGCAAGG TTTTTTGATGTCTAA malA 1044355 - 1043540 - | maltodextrose utilization protein malD 1045237 - 1044377 - | maltodextrin transport system permease protein malC 1046541 - 1045234 - | maltose transport system permease protein TERM 1340 1046421 - 1046388 - G 100 -14.1 -3.32769 | opp_overlap 1046391, overlap 1046382 CTGTTAAAGCAGGAA TTCCTAGAACTACAA TTTC TAGTAGTTCTAGGAA GAAAACAACTAATAA TERM 1341 1046528 - 1046540 + g 83 -3.4 -5.54885 | GGCTTCTGTTGTCTT TGGT TATCT ACCA TTTTTTATTCCTCTT amyA 1048802 - 1046616 - | alpha-amylase amyB 1050492 - 1048777 - | cyclomaltodextrinase malX 1051941 - 1050646 - | maltose/maltodextrin-binding protein TERM 1342 1050999 - 1051020 + g 79 -5.1 -5.1361 | overlap 1051016 AAATAACCCAAGCTT TACCACCTG CGAA CGGTTGGTA TTTTTTACCATTTGT TERM 1343 1052260 - 1052203 - H 100 -18.1 -4.88918 | opp_overlap 1052208, overlap 1052208 1052247 1052252 TCAGCGTAAATAAAA CAAAAGCTCTATAATCTCTTGAATGGG TAAA CCCACTGTAGAGATTATAGAGCTTTTT GAATATCAAAAAAGT TERM 1344 1052208 - 1052255 + H 100 -15.8 -4.70659 | opp_overlap 1052203 1052208 1052247 1052252 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGGG TAAA CCCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA TERM 1345 1052255 - 1052208 - H 100 -18 -5.34857 | opp_overlap 1052208, overlap 1052203 1052247 1052252 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGGG TAAA CCCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA M28_Spy1049 1052225 - 1052449 + | transposase M28_Spy1050 1053497 - 1052514 - | esterase dltD 1054778 - 1053528 - | protein precursor TERM 1346 1054726 - 1054712 - G 72 -3.6 -5.1166 | TAGGAAAACTAAAAA TAGTAA TCA CTACTA AAACAAAGGCAATAA M28_Spy1052 1055010 - 1054771 - | D-alanine--poly(phosphoribitol) ligase subunit 2 M28_Spy1053 1056284 - 1055028 - | hypothetical protein TERM 1347 1056160 - 1056171 + g 70 -3.6 -4.87803 | overlap 1056155 ACCAAGGTTTCATAA GTGC TTAA GCGC TTTTGTTTAAAAATC dltA 1057819 - 1056281 - | D-alanine--D-alanyl carrier protein ligase M28_Spy1055 1057974 - 1057831 - | hypothetical protein uvrB 1060229 - 1058238 - | excinuclease ABC subunit B TERM 1348 1058883 - 1058895 + g 75 -10.5 -2.92267 | overlap 1058881 1058877 GAACGTCCGTTCATC GCGCG CTA CGCGC TGGTTAATTTCTCCC TERM 1349 1059232 - 1059220 - G 87 -6.3 -5.33848 | overlap 1059222 ATCATAATTAAAAAA TCTTC TGG GAAGA AATCTAACAAGGTAT TERM 1350 1060325 - 1060311 - H 76 -4.3 -5.11937 | opp_overlap 1060311 1060313, overlap 1060313 AATAAGCGTAAAAAA CATGT CATTT ACATG TTATGTTTTATGACA TERM 1351 1060351 - 1060313 - H 71 -6.3 -4.17355 | opp_overlap 1060311 1060313, overlap 1060311 TAAGCGTAAAAAACA TGTCATTTACATGTTAT GTTTT ATGACATATAAATAACA AATTTCTTGCTTAAT TERM 1352 1060887 - 1060876 - g 88 -3 -6.02345 | opp_overlap 1060876 TAACTATAAAAAAAA GTAT GATT ATAC TGTTAAAACATTTGA glnH 1060421 - 1062595 + | transporter TERM 1353 1062621 - 1062611 - g 71 -4 -4.96646 | TGACAGAATTAAAAA TTGA TGT TCAA GATTTACACAAATCT TERM 1354 1062999 - 1062976 - g 84 -6.7 -4.84359 | opp_overlap 1062982 GCACTTCTAGAAAAA GTCGGACTT TCTGAT AAGGCCGAC GCCTTCCCAGGAAGT TERM 1355 1062982 - 1063013 + G 73 -8 -3.85698 | opp_overlap 1062976 CTAGAAAAAGTCGGA CTTTCTGATAAGGC CGAC GCCTTCCCAGGAAG TTTATCCGGCGGGCA glnQ.2 1062595 - 1063335 + | glutamine transport ATP-binding protein TERM 1356 1063402 - 1063367 - T 100 -10.6 -5.055 | opp_overlap 1063373, overlap 1063370 1063373 CTAACTTCCAAAAAA TAATAAGGCAAGGAAA CAGG TTTCCTTGCCTTTTTT GGTTACTGTTATTAT TERM 1357 1063399 - 1063370 - T 100 -12.3 -4.62085 | opp_overlap 1063373, overlap 1063367 1063373 ACTTCCAAAAAATAA TAAGGCAAGGAAA CAGG TTTCCTTGCCTTT TTTGGTTACTGTTAT TERM 1358 1063373 - 1063396 + T 100 -14 -5.31059 | opp_overlap 1063370 1063367 1063373 TCCAAAAAATAATAA GGCAAGGAAA CAGG TTTCCTTGCC TTTTTTGGTTACTGT TERM 1359 1063396 - 1063373 - T 100 -14 -4.40692 | opp_overlap 1063373, overlap 1063370 1063367 TCCAAAAAATAATAA GGCAAGGAAA CAGG TTTCCTTGCC TTTTTTGGTTACTGT TERM 1360 1063429 - 1063478 + T 70 -2.4 -5.25803 | gap 1, opp_overlap 1063432 1063434, overlap 1063430 1063432 1063433 TTATTCAAACCAGCA AAATA-GGGATACTCTTATGA CTCTCTACT TCATAAGAGTGTCCCCTATGC TTTTTTATGGGCGTT TERM 1361 1063475 - 1063432 - T 74 -6.3 -4.39386 | gap 1, opp_overlap 1063430 1063429 1063432 1063433, overlap 1063434 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTACT TCATAAGAGTGTCCCCTA TGCTTTTTTATGGGC TERM 1362 1063432 - 1063475 + T 75 -8.5 -3.44801 | gap 1, opp_overlap 1063432 1063434, overlap 1063430 1063429 1063433 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTACT TCATAAGAGTGTCCCCTA TGCTTTTTTATGGGC TERM 1363 1063433 - 1063473 + T 77 -9.2 -3.28457 | opp_overlap 1063432 1063434, overlap 1063432 1063430 1063429 TCAAACCAGCAAAAT AGGGATACTCTTATGA CTCTCTACT TCATAAGAGTGTCCCC TATGCTTTTTTATGG TERM 1364 1063472 - 1063434 - T 87 -10.5 -3.79533 | opp_overlap 1063433 1063432 1063430 1063429, overlap 1063432 CAAACCAGCAAAATA GGGATACTCTTATGA CTCTCTACT TCATAAGAGTGTCCC CTATGCTTTTTTATG M28_Spy1059 1063635 - 1063483 - | hypothetical protein TERM 1365 1063636 - 1063649 + r 74 -2.3 -5.47159 | ATTTTTTTCTGTCAT GCAAG GTCA CTCGC TTTTTCTTTATTGGC M28_Spy1060 1065011 - 1063632 - | PTS system, cellobiose-specific IIC component TERM 1366 1064093 - 1064107 + g 82 -11.4 -3.21593 | opp_overlap 1064092 1064089, overlap 1064090 1064104 GGTATGGTAAATTAG CAGCGC TAT GCGCTG TATTGTAAGCAGCTG M28_Spy1061 1065638 - 1065189 - | hypothetical protein M28_Spy1062 1065970 - 1065635 - | PTS system, cellobiose-specific IIA component M28_Spy1063 1066314 - 1065973 - | PTS system, cellobiose-specific IIB component M28_Spy1064 1068301 - 1066307 - | PTS system, mannitol (cryptic)-specific IIA component M28_Spy1065 1069501 - 1068407 - | outer surface protein bglA.2 1070934 - 1069510 - | beta-glucosidase TERM 1367 1069963 - 1069953 - G 70 -8.2 -3.7212 | opp_overlap 1069952 1069953 1069953 AAATATCTAAGATAA GGGG GTC CCCC TCTTGCTGTGACTTA M28_Spy1067 1071123 - 1071830 + | nicotinamide mononucleotide transporter TERM 1368 1071857 - 1071815 - T 91 -5 -5.84381 | opp_overlap 1071825, overlap 1071817 1071825 TTACCAAGAAAAAAA GGTCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAATT TTTCACGTTCTAAGC TERM 1369 1071855 - 1071817 - T 85 -12 -3.03774 | opp_overlap 1071825, overlap 1071815 1071825 ACCAAGAAAAAAAGG TCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAA TTTTTCACGTTCTAA TERM 1370 1071847 - 1071825 - T 100 -9.2 -5.16472 | opp_overlap 1071825, overlap 1071817 1071815 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA TERM 1371 1071825 - 1071847 + T 100 -9.2 -4.92239 | opp_overlap 1071825 1071817 1071815 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA M28_Spy1068 1071993 - 1071835 - | putative cytoplasmic protein obgE 1073369 - 1072062 - | GTPase ObgE TERM 1372 1072461 - 1072472 + g 86 -4.4 -5.4505 | ATCAAACTCGTCATA TTGG GCAG CCAA TTTTTTCTTGAAGGC TERM 1373 1072479 - 1072494 + g 77 -6.2 -4.65078 | GGCAGCCAATTTTTT CTTGAA GGCT TTCAAG TTTTCTTGAGCCTCT TERM 1374 1073426 - 1073415 - R 79 -3.6 -5.44119 | TTTACTTTAAAAAAA CGCC TTTC AGCG TTTCCTTACATTAAT M28_Spy1070 1073560 - 1073432 - | hypothetical protein TERM 1375 1073751 - 1073794 + H 93 -7.6 -5.63504 | gap 1, opp_overlap 1073763, overlap 1073752 CCTCGTCTGGTGAAC T-GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGCTA TTTTTTTATGAAATT TERM 1376 1073752 - 1073792 + H 100 -12.7 -4.45201 | opp_overlap 1073763, overlap 1073751 CTCGTCTGGTGAACT GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGC TATTTTTTTATGAAA TERM 1377 1073893 - 1073868 - g 70 -7.7 -3.75665 | overlap 1073869 GGAGAGTCCATTAAA TCCATATCAAA AAAG TTTGATATGGC AGAATCCGATCTCAA TERM 1378 1073892 - 1073869 - g 80 -11.2 -2.85078 | overlap 1073868 GAGAGTCCATTAAAT CCATATCAAA AAAG TTTGATATGG CAGAATCCGATCTCA M28_Spy1071 1073784 - 1074317 + | transposase TERM 1379 1075141 - 1075097 - g 100 -15.4 -4.62054 | opp_overlap 1075094 1075103, overlap 1075098 1075103 CGAATTAAAGCAAAA CTAAAAGGATTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCAA TAATTATTTGTCCAA TERM 1380 1075140 - 1075098 - g 100 -16.7 -3.36148 | opp_overlap 1075094 1075103, overlap 1075097 1075103 GAATTAAAGCAAAAC TAAAAGGATTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCA ATAATTATTTGTCCA TERM 1381 1075135 - 1075103 - g 100 -14.4 -4.74084 | opp_overlap 1075103 1075094, overlap 1075098 1075097 AAAGCAAAACTAAAA GGATTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT TERM 1382 1075103 - 1075135 + G 89 -12.2 -3.74658 | opp_overlap 1075098 1075097 1075103, overlap 1075094 AAAGCAAAACTAAAA GGATTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT M28_Spy1072 1074338 - 1075144 + | transposase rsuA 1075927 - 1075193 - | ribosomal small subunit pseudouridine synthase A M28_Spy1074 1076039 - 1076404 + | hypothetical protein TERM 1383 1076465 - 1076412 - T 100 -12.1 -5.13722 | gap 1, opp_overlap 1076427 CGGAGTAAAACAAAA GAAAAGAACCAAAAAGGTAAGCAATC CCT AAGTGCTTACCTTTTTGGTTATCT-C AATCAATAAAATAGC TERM 1384 1076427 - 1076451 + T 88 -7.2 -4.96646 | opp_overlap 1076412 GAAAAGAACCAAAAA GGTAAGCAAT CCCTA AGTGCTTACC TTTTTGGTTATCTCA M28_Spy1075 1077744 - 1076524 - | major facilitator transporter TERM 1385 1077255 - 1077243 - G 76 -3.3 -5.20783 | ATCCAAAGAGAAAAA GGCCA CGC CAGCC TAGACTTGGAGCCAG TERM 1386 1077835 - 1077820 - H 93 -7.6 -5.49809 | CAAAGGTCAAAAAAA GACTTG GAAA CAAGTC CGCAAGTCCATCAAA M28_Spy1076 1078046 - 1079602 + | hypothetical protein TERM 1387 1079635 - 1079604 - T 81 -7.4 -4.44046 | gap 1, opp_overlap 1079610 1079611 1079613, overlap 1079610 1079611 TTTACCGTAAATAAA CTATAA-CCACCCGT CTA ACGGGTGATTTATGG TATCTCTCAATAAAG TERM 1388 1079610 - 1079628 + T 82 -8.8 -4.05389 | opp_overlap 1079610 1079604 1079611, overlap 1079611 1079613 GTAAATAAACTATAA CCACCCGT CTA ACGGGTGA TTTATGGTATCTCTC TERM 1389 1079628 - 1079610 - T 90 -11 -3.72242 | opp_overlap 1079610 1079611 1079613, overlap 1079604 1079611 GTAAATAAACTATAA CCACCCGT CTA ACGGGTGA TTTATGGTATCTCTC TERM 1390 1079611 - 1079627 + T 87 -12.3 -3.0251 | opp_overlap 1079611 1079610 1079604, overlap 1079610 1079613 TAAATAAACTATAAC CACCCGT CTA ACGGGTG ATTTATGGTATCTCT TERM 1391 1079627 - 1079611 - T 86 -12.3 -2.82261 | opp_overlap 1079610 1079611 1079613, overlap 1079610 1079604 TAAATAAACTATAAC CACCCGT CTA ACGGGTG ATTTATGGTATCTCT TERM 1392 1079613 - 1079625 + T 74 -9.1 -3.05982 | opp_overlap 1079611 1079610 1079604, overlap 1079611 1079610 AATAAACTATAACCA CCCGT CTA ACGGG TGATTTATGGTATCT TERM 1393 1079642 - 1079698 + T 100 -32.3 -3.39895 | opp_overlap 1079658, overlap 1079658 GATTTATGGTATCTC TCAATAAAGGAAAAAAGTCCCAATTCT CAG AGAGTTGGGACTTTTTTCCTTTATTGA TTCATTAATCACCCG TERM 1394 1079658 - 1079682 + T 100 -13.7 -5.46129 | opp_overlap 1079658, overlap 1079642 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTCCTTTATTG TERM 1395 1079682 - 1079658 - T 100 -11.5 -5.46129 | opp_overlap 1079642 1079658 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTCCTTTATTG M28_Spy1077 1080108 - 1079707 - | thioesterase superfamily protein M28_Spy1078 1080705 - 1080193 - | phosphorylase Pnp/Udp family protein TERM 1396 1080797 - 1080819 + r 76 -4.1 -5.17576 | ACAGGGTAAACCTTT GTGGCTGAA ATGAA TTCTGCTAC TTTTTTACCTTGATG TERM 1397 1081070 - 1081082 + r 89 -9.1 -4.13014 | opp_overlap 1081070 CTGCGGGAGTCAAAA GGTCC AGT GGACC TTTTGAGCGTCTCAC TERM 1398 1081082 - 1081070 - R 89 -9.1 -4.18018 | opp_overlap 1081070 CTGCGGGAGTCAAAA GGTCC AGT GGACC TTTTGAGCGTCTCAC M28_Spy1079 1082805 - 1081126 - | site-specific recombinase TERM 1399 1082771 - 1082784 + g 85 -3.9 -5.58051 | GACGTAGATACTCGT GTATA GAGG TATAC TTTTATTTTTTCTTT M28_Spy1080 1083063 - 1082902 - | hypothetical protein TERM 1400 1083607 - 1083567 - R 100 -13.5 -4.67353 | opp_overlap 1083566 TTACTTATGTAAAAA GGTCCAATTCCCACTGC ATGAGTA GCAGTGAAAATTAGACC CTCTTGGTAACTGTC M28_Spy1081 1084489 - 1083761 - | putative phage-associated protein TERM 1401 1084508 - 1084522 + r 70 -7.2 -3.89756 | TGCTCCTTTCTTGAT TTTCGA TAA TCGAAA TTCTTGATTTCCGAT TERM 1402 1084531 - 1084545 + r 75 -8.6 -3.38559 | opp_overlap 1084524, overlap 1084523 ATCGAAATTCTTGAT TTCCGA TTT TCGGAA TTCTGGACTTCTGCT TERM 1403 1084587 - 1084619 + r 93 -10 -4.10566 | opp_overlap 1084592 TTGTTATTATGGTTA TTTAAGGGTGTAAC TTTTT GTTACTCCCTTAGA TTTCTCTGGTCATAT M28_Spy1082 1085142 - 1084615 - | hypothetical protein TERM 1404 1085165 - 1085214 + r 73 -3.8 -5.10877 | opp_overlap 1085173, overlap 1085173 CTCCTTTGTTTGAAT TAAAAAAAGGGAAGTATAGG TTTTAATTTT TCTATACTTCCCTTTGCTTG TTTTTAATTTATTGT TERM 1405 1085173 - 1085206 + r 78 -7.6 -4.25754 | opp_overlap 1085173, overlap 1085165 TTTGAATTAAAAAAA GGGAAGTATAGG TTTTAATTTT TCTATACTTCCC TTTGCTTGTTTTTAA TERM 1406 1085206 - 1085173 - R 93 -6.9 -5.63103 | opp_overlap 1085165 1085173 TTTGAATTAAAAAAA GGGAAGTATAG GTTTTAATTTTT CTATACTTCCC TTTGCTTGTTTTTAA M28_Spy1083 1086802 - 1085573 - | nickase TERM 1407 1086803 - 1086814 + r 76 -4.4 -5.10767 | opp_overlap 1086803, overlap 1086783 GTCATTATATGACAA TGGA TATT TCCA TTTTTGTCTTGACTC TERM 1408 1087355 - 1087315 - R 84 -6.3 -5.1764 | gap 1, opp_overlap 1087315 1087311 GATAGAATAGAAAAA GCCGAC-TACTGAATTAA TTTTTG TTGTTTCAGTATGTCGGC TTAATTGTTTTGTTC TERM 1409 1087315 - 1087355 + r 81 -9.2 -3.74488 | gap 1, opp_overlap 1087315, overlap 1087311 GATAGAATAGAAAAA GCCGAC-TACTGAATTAAT TTTT GTTGTTTCAGTATGTCGGC TTAATTGTTTTGTTC TERM 1410 1087450 - 1087460 + r 74 -6.8 -4.34402 | CGAATGGTTGTTGCT CCCT GCA AGGG TTTTGCTCTAAAGGC M28_Spy1084 1087856 - 1087527 - | hypothetical protein M28_Spy1085 1088768 - 1088343 - | MarR family transcriptional regulator TERM 1411 1089256 - 1089229 - R 87 -13 -2.70708 | opp_overlap 1089229 1089233, overlap 1089233 AACTTAAGTATATCA CAAATTAGTTGA TGCG TCAACTAATTTG TTTTTAAGCTTAGAT TERM 1412 1089229 - 1089256 + r 100 -13 -4.67234 | opp_overlap 1089229 1089233, overlap 1089233 AACTTAAGTATATCA CAAATTAGTTGA TGCG TCAACTAATTTG TTTTTAAGCTTAGAT TERM 1413 1089252 - 1089233 - R 79 -8 -4.04149 | opp_overlap 1089229 1089233, overlap 1089229 TAAGTATATCACAAA TTAGTTGA TGCG TCAACTAA TTTGTTTTTAAGCTT TERM 1414 1089233 - 1089252 + r 90 -8 -4.88293 | opp_overlap 1089233 1089229, overlap 1089229 TAAGTATATCACAAA TTAGTTGA TGCG TCAACTAA TTTGTTTTTAAGCTT TERM 1415 1089414 - 1089430 + r 87 -12.3 -3.04322 | overlap 1089407 ACCATGACTGCGGAA GCCGACA TTC TGTCGGC TGTTGGGGCATTCGG TERM 1416 1089557 - 1089581 + r 75 -7.1 -4.14764 | opp_overlap 1089556 1089555, overlap 1089558 GATAGCTGTATAATT GCGCCCTTAGA AAA TCTAAGGGAGA TTTGATTATTTACAA TERM 1417 1089558 - 1089580 + r 80 -10.6 -3.08135 | opp_overlap 1089556 1089555, overlap 1089557 ATAGCTGTATAATTG CGCCCTTAGA AAA TCTAAGGGAG ATTTGATTATTTACA M28_Spy1086 1089902 - 1089612 - | hypothetical protein TERM 1418 1089958 - 1089931 - R 89 -3.5 -5.7946 | overlap 1089910 CTTGTAATAAAAAAA GACGATAGA GTTTTTAATT TCTATCGCC TAACATCTATCTGAA M28_Spy1087 1090624 - 1090007 - | putative cytoplasmic protein M28_Spy1088 1091114 - 1090692 - | hypothetical protein M28_Spy1089 1091670 - 1091134 - | putative cytoplasmic protein M28_Spy1090 1093493 - 1091826 - | tRNA (uracil-5-)-methyltransferase TERM 1419 1093528 - 1093505 - R 90 -8.2 -5.02074 | opp_overlap 1093493 1093505 1093508, overlap 1093493 CCATTGCTCAAAAAA GAAGAGCAAC TTTA GTTACTCTCC ATTATACCATATCTT M28_Spy1091 1094993 - 1093542 - | LytR family transcriptional regulator TERM 1420 1093937 - 1093950 + g 71 -3.8 -4.8622 | CTTCGATGGTTTGGT TGGG AACAAC CCCA TTTTTCATTCGCAGG aroK 1095692 - 1095201 - | shikimate kinase TERM 1421 1095344 - 1095354 + g 81 -5.4 -5.02201 | opp_overlap 1095344 ACTTAAGAAATAGAG GTCT TTG AGAC TTTTTATCATGTTTT M28_Spy1093 1096968 - 1095685 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1422 1097057 - 1097030 - R 85 -6.4 -5.252 | TATCCTCATAAAAAA TGAAGCAAGAAA ATAG TTTCTCACTCCA CGACTTATTATCTTT M28_Spy1094 1098044 - 1097079 - | ribonuclease BN TERM 1423 1097892 - 1097879 - G 71 -3.9 -4.88407 | TGAGGTAAGGAAAAA TATTG GCTG CAATA ACAATTAATGGAAAG map 1098906 - 1098046 - | methionine aminopeptidase M28_Spy1096 1100217 - 1098922 - | CBS domain-containing cytosolic protein M28_Spy1097 1100756 - 1100214 - | ribosomal-protein-alanine acetyltransferase TERM 1424 1100286 - 1100309 + g 76 -4.6 -5.13521 | opp_overlap 1100287, overlap 1100287 1100295 ATCACTTCCTTTAAA ACAGGTTTTT AGTT GAAAACCTGC TTTTTTAGCTACTTT TERM 1425 1100287 - 1100308 + g 70 -8.1 -3.66486 | opp_overlap 1100287, overlap 1100286 1100295 TCACTTCCTTTAAAA CAGGTTTTT AGTT GAAAACCTG CTTTTTTAGCTACTT TERM 1426 1100308 - 1100287 - G 73 -7.4 -4.08216 | opp_overlap 1100287 1100286 1100295 TCACTTCCTTTAAAA CAGGTTTT TAGTTG AAAACCTG CTTTTTTAGCTACTT TERM 1427 1100735 - 1100725 - G 79 -3.2 -5.42259 | GGAGTCTCAAAAAAA GCAA ACA CTGC AAGCTTTGTCCAAAT TERM 1428 1100942 - 1100972 + r 73 -9.3 -2.83403 | gap 1, opp_overlap 1100942 1100948, overlap 1100948 CATTTTTAAATATCA GAAA-AAGAGAATC TTTC GATTCTCTTGTTTC ATTTGCTAGAACAAA TERM 1429 1100972 - 1100942 - R 73 -9.3 -2.84801 | gap 1, opp_overlap 1100942 1100948, overlap 1100948 CATTTTTAAATATCA GAAA-AAGAGAATC TTTC GATTCTCTTGTTTC ATTTGCTAGAACAAA TERM 1430 1100948 - 1100965 + r 85 -8.5 -4.17002 | opp_overlap 1100948 1100942, overlap 1100942 TAAATATCAGAAAAA GAGAATC TTTC GATTCTC TTGTTTCATTTGCTA TERM 1431 1100965 - 1100948 - R 95 -8.5 -5.00846 | opp_overlap 1100942 1100948, overlap 1100942 TAAATATCAGAAAAA GAGAATC TTTC GATTCTC TTGTTTCATTTGCTA grab 1101731 - 1100994 - | protein G-related alpha 2M-binding protein TERM 1432 1102070 - 1102087 + r 87 -9.9 -3.94853 | opp_overlap 1102070 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA TERM 1433 1102087 - 1102070 - R 100 -9.9 -5.48063 | opp_overlap 1102070 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA murZ 1103348 - 1102089 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1434 1102326 - 1102356 + g 86 -9 -4.40237 | GATATCTGCTCCCAT GCGCATCAACTCTG GCA CATGGTTAATGCGC TTTTCATATATAGTG TERM 1435 1103501 - 1103473 - R 82 -3.2 -5.64873 | overlap 1103453 TTTAATAACAAAAAA GCAGAGTAAG ATTTTTTCA CTCACTCTAC TTTTTTAATAAAGTT metK2 1104718 - 1103522 - | S-adenosylmethionine synthetase TERM 1436 1104896 - 1104875 - R 73 -9.5 -2.79684 | gap 1, opp_overlap 1104874, overlap 1104868 CTAGTAAGGCAACTA GCTAGTCCAC CTA GTGG-CTAGC GTCCATTAACCAGAC TERM 1437 1105162 - 1105191 + r 73 -8.7 -3.21218 | opp_overlap 1105167, overlap 1105167 1105189 TCCTATTTATTTCAA AAAAACCTCAAGG TTAT TCTTGAGGTTTTC TTGATAGTCAACAAT TERM 1438 1105167 - 1105186 + r 93 -8.6 -4.73613 | opp_overlap 1105167, overlap 1105162 TTTATTTCAAAAAAA CCTCAAGG TTAT TCTTGAGG TTTTCTTGATAGTCA TERM 1439 1105186 - 1105167 - R 93 -7.9 -5.44119 | opp_overlap 1105167 1105162 TTTATTTCAAAAAAA CCTCAAG GTTATT CTTGAGG TTTTCTTGATAGTCA inlA 1107632 - 1105254 - | internalin protein TERM 1440 1105423 - 1105436 + g 76 -4.5 -5.09204 | CTTTCTTTCGCCTTA GTAGC CATA GCTGC TTTTTCTTCAGCTGT TERM 1441 1108445 - 1108456 + G 80 -4.4 -5.24129 | GATGTCATTATTGGG GTTG GTCT CAAC TTTTTTGTCACCGAC TERM 1442 1108637 - 1108613 - g 93 -8 -5.38054 | opp_overlap 1108612, overlap 1108598 GTTTACAAAGAAAAA TCACTTGTTC TTAAT AAACAAGTGA CCTTTACAGAAAATA birA 1107836 - 1108777 + | biotin--protein ligase M28_Spy1103 1109012 - 1108752 - | hypothetical protein TERM 1443 1108996 - 1108979 - G 85 -2.7 -5.84432 | overlap 1108980 1108983 TATAACAGAAAAAAA TGATTCT ATGA AGAATCC ACACAGATTGATGCA M28_Spy1104 1110239 - 1109097 - | transposase TERM 1444 1110328 - 1110365 + r 100 -14.3 -5.38497 | overlap 1110307 1110349 TGCGTTTGGCGTGCA GATTGATGCTGACTTGG ATAC CCAAGAAAGCATCAATC TTTTTTGGTTTCACT TERM 1445 1110469 - 1110435 - R 100 -10.8 -5.74122 | opp_overlap 1110442, overlap 1110437 1110442 TATTAGATAAAAAAA CGCTAAAGGTAAGCCC AAT AGGCTTACCTTTATAG CGTTACTGGTTCATT TERM 1446 1110467 - 1110437 - R 85 -12 -3.00081 | opp_overlap 1110442, overlap 1110435 1110442 TTAGATAAAAAAACG CTAAAGGTAAGCCC AAT AGGCTTACCTTTAT AGCGTTACTGGTTCA TERM 1447 1110462 - 1110442 - R 91 -11.9 -3.8615 | opp_overlap 1110442, overlap 1110437 1110435 TAAAAAAACGCTAAA GGTAAGCCC AAT AGGCTTACC TTTATAGCGTTACTG TERM 1448 1110442 - 1110462 + r 93 -11.2 -3.93236 | opp_overlap 1110437 1110435 1110442 TAAAAAAACGCTAAA GGTAAGCC CAATA GGCTTACC TTTATAGCGTTACTG M28_Spy1105 1112185 - 1110500 - | DNA polymerase III subunits gamma and tau TERM 1449 1112081 - 1112065 - G 79 -5.1 -5.06451 | overlap 1112073 TAGGACCTGAAAAAA GATAAGC ATG GCTAATC TTGCCAGATTCAACT M28_Spy1106 1112748 - 1112185 - | GAF domain-containing protein M28_Spy1107 1112827 - 1113636 + | hypothetical protein M28_Spy1108 1113952 - 1113689 - | hypothetical protein TERM 1450 1114020 - 1113998 - R 88 -7.1 -4.9645 | AGCACAACAATAAAA GAGCAGATT TAAAT AATCTACTC AGCCACTTCCACTAT udk 1114670 - 1114032 - | uridine kinase TERM 1451 1115361 - 1115372 + G 72 -4.4 -4.68994 | opp_overlap 1115361 AGAGCAAACCAACGA TGCT ATTC AGCA TTTTTACCTCATGGT deaD2 1114723 - 1115841 + | ATP-dependent RNA helicase TERM 1452 1115915 - 1115880 - T 100 -13.6 -4.73388 | opp_overlap 1115883 1115886, overlap 1115883 AAGGGCTACTAAAAA CAACAATCCAATTACT TCAA AGTAATTGGATTGTTT AGTATATCAATTCTA TERM 1453 1115912 - 1115883 - T 100 -15.3 -4.47707 | opp_overlap 1115883 1115886, overlap 1115880 GGCTACTAAAAACAA CAATCCAATTACT TCAA AGTAATTGGATTG TTTAGTATATCAATT TERM 1454 1115883 - 1115912 + T 100 -15.3 -3.89614 | opp_overlap 1115883 1115880, overlap 1115886 GGCTACTAAAAACAA CAATCCAATTACT TCAA AGTAATTGGATTG TTTAGTATATCAATT TERM 1455 1115886 - 1115909 + T 93 -11.2 -4.06993 | opp_overlap 1115883 1115880, overlap 1115883 TACTAAAAACAACAA TCCAATTACT TCAA AGTAATTGGA TTGTTTAGTATATCA M28_Spy1111 1117225 - 1115951 - | peptidoglycan N-acetylglucosamine deacetylase TERM 1456 1117310 - 1117275 - R 100 -14.4 -5.69023 | opp_overlap 1117275 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAA CCTAACTTTTTGTTTA TTTTTTTTATTACTG TERM 1457 1117275 - 1117310 + r 100 -12.2 -6.13503 | opp_overlap 1117275 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAA CCTAACTTTTTGTTTA TTTTTTTTATTACTG gapN 1118747 - 1117320 - | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 1458 1117763 - 1117753 - G 73 -5.4 -4.64334 | opp_overlap 1117753 AACCCTTCAACAAAA TCAG CAG CTGA TGTATCAATTAATGG TERM 1459 1118922 - 1118903 - R 95 -8.6 -5.1675 | opp_overlap 1118903 TTAGCTAGCAAAAAA GAGCTGGT TTAA ACCAACTC TTTAACCCGTTAATC pstI 1120665 - 1118932 - | phosphoenolpyruvate-protein phosphotransferase TERM 1460 1119410 - 1119423 + g 72 -3.1 -5.1356 | ACCGCAACGCCTTCT GCAAG CAAG TTTGC TTTTTCTTCGTCAAA TERM 1461 1119894 - 1119909 + g 76 -3.2 -5.28942 | TGTGCGCATCTTTAA GGAGAG ACCA CTCTGC TTTTTGTTTGGCATA ptsH 1120933 - 1120670 - | phosphocarrier protein HPr TERM 1462 1121055 - 1121066 + H 71 -3 -5.10163 | AACGACAAAAAATGT GAAA TTAT TTTC TTTTATTTTCACGTT nrdH 1121293 - 1121544 + | glutaredoxin TERM 1463 1121663 - 1121673 + G 81 -5.4 -5.08824 | opp_overlap 1121663 1121660 CATAAAGACAAAGAA GCTT TAA AAGC TTTTTTCGCTGAAAA nrdE.2 1121564 - 1123723 + | ribonucleotide-diphosphate reductase subunit alpha M28_Spy1117 1123930 - 1123805 - | hypothetical protein TERM 1464 1123975 - 1124002 + H 82 -8.5 -4.07868 | TTAAACTTATTATTA CCGGTAGAACT TTGGTC GGTTCTACTGG TTTATCTCGATATCC TERM 1465 1124132 - 1124112 - gH 72 -8.4 -3.36505 | AGACGTCATTGACAA GTCAACTT GGGAA AAGTTGAC CGAACAATTTTGGCT TERM 1466 1124516 - 1124506 - gH 75 -5.4 -4.77173 | GCCTTACAAAAGAAA GTTG CCT CAAC ATATCTCGAAACTTT nrdF 1124056 - 1125015 + | ribonucleotide-diphosphate reductase subunit beta TERM 1467 1125026 - 1125048 + GT 100 -13.6 -4.77719 | opp_overlap 1125030 TCTAATAGTGCTCAC GAGACTGATA ATC TATCAGTCTC TTTTCTTAACTTTTG M28_Spy1119 1124990 - 1126303 + | chloride channel protein TERM 1468 1126588 - 1126543 - T 75 -4.8 -4.93316 | gap 1, opp_overlap 1126553, overlap 1126545 1126553 CAAGAATATGAAAAA TATGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-ATG CTCAATTTGAGACAA TERM 1469 1126586 - 1126545 - T 76 -7.4 -4.06487 | gap 1, opp_overlap 1126553, overlap 1126543 1126553 AGAATATGAAAAATA TGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-A TGCTCAATTTGAGAC TERM 1470 1126579 - 1126553 - T 100 -12.3 -4.02468 | opp_overlap 1126553, overlap 1126545 1126543 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT TERM 1471 1126553 - 1126579 + T 95 -14.5 -3.23395 | opp_overlap 1126545 1126543 1126553 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT M28_Spy1123 1128344 - 1127649 - | CAAX amino protease M28_Spy1124 1129124 - 1128363 - | hypothetical protein TERM 1472 1128632 - 1128619 - G 73 -6.7 -4.2018 | overlap 1128623 1128625 AAATTTGGAAAATAA GGAAC ATCG GTTCC CCGAATGGCATTGTA M28_Spy1125 1129351 - 1129121 - | Cro/CI family transcriptional regulator TERM 1473 1129693 - 1129656 - R 86 -10.2 -3.61178 | opp_overlap 1129655 1129665, overlap 1129665 GGTAGTCATTTCAAA TATAAAAAACCAAGTT CTAAAT AACTTGGTTTTTTATG GATTTACACTGTTTC TERM 1474 1129684 - 1129665 - R 87 -6.5 -5.56264 | opp_overlap 1129665 1129655, overlap 1129656 TTCAAATATAAAAAA CCAAGTT CTAAAT AACTTGG TTTTTTATGGATTTA TERM 1475 1129665 - 1129684 + r 85 -6.5 -5.33866 | opp_overlap 1129656 1129665, overlap 1129655 TTCAAATATAAAAAA CCAAGTT CTAAAT AACTTGG TTTTTTATGGATTTA alaS 1132315 - 1129697 - | alanyl-tRNA synthetase TERM 1476 1130026 - 1130046 + g 79 -9.7 -3.76281 | opp_overlap 1130026 1130025 1130023 1130028, overlap 1130029 1130037 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGCT TERM 1477 1130046 - 1130026 - G 70 -9.7 -2.54801 | opp_overlap 1130026 1130029 1130037, overlap 1130025 1130023 1130028 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGCT TERM 1478 1130029 - 1130043 + g 72 -10 -2.65994 | opp_overlap 1130028 1130026 1130025 1130023, overlap 1130026 1130037 CTTTAAAGACATCAC CAGCTG CTG CAGCTG CTGCTTTTTCTTTAA TERM 1479 1130037 - 1130047 + g 89 -6.8 -5.28942 | opp_overlap 1130028 1130026 1130025 1130023, overlap 1130029 1130026 ACATCACCAGCTGCT GCAG CTG CTGC TTTTTCTTTAAGCTC prsA 1133757 - 1132702 - | foldase protein PrsA M28_Spy1128 1134527 - 1133820 - | O-methyltransferase TERM 1480 1134549 - 1134566 + r 75 -7 -4.24432 | opp_overlap 1134549, overlap 1134544 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT TERM 1481 1134566 - 1134549 - R 93 -7 -5.75478 | opp_overlap 1134544 1134549 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT M28_Spy1129 1135789 - 1134593 - | oxalate/formate antiporter TERM 1482 1136133 - 1136079 - R 100 -21.9 -5.40873 | opp_overlap 1136092, overlap 1136080 AATATAAAAAGAAAA TGACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATCC TAAACTCTTTTTGTC TERM 1483 1136132 - 1136080 - R 100 -25.4 -3.80863 | opp_overlap 1136092, overlap 1136079 ATATAAAAAGAAAAT GACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATC CTAAACTCTTTTTGT TERM 1484 1136092 - 1136120 + r 100 -14.8 -4.07124 | opp_overlap 1136080 1136079 AATGACCGATAGAAA TGGAGATTCACA CCAAC TGTGAATCTCCA TTTCTATCAATCCTA pepB 1137970 - 1136165 - | oligoendopeptidase F M28_Spy1131 1138945 - 1137983 - | putative competence protein/transcription factor M28_Spy1132 1139956 - 1139240 - | ribosomal small subunit pseudouridine synthase A TERM 1485 1139384 - 1139398 + g 81 -7.2 -4.49389 | overlap 1139370 GGTCAAAAACATTTT TTTCAC TTG GTGAAA TTTTCCTTCTGAAAT nagB 1140902 - 1140075 - | glucosamine-6-phosphate isomerase queA 1140981 - 1142009 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase M28_Spy1135 1142016 - 1143236 + | putative cytoplasmic protein TERM 1486 1143246 - 1143271 + T 95 -9 -5.14563 | opp_overlap 1143246 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGCCAAGC TTTTTTAATGAGCAA TERM 1487 1143271 - 1143246 - T 100 -11.2 -4.67904 | opp_overlap 1143246 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGCCAAGC TTTTTTAATGAGCAA M28_Spy1136 1143940 - 1143350 - | hypothetical protein M28_Spy1137 1144185 - 1143937 - | hypothetical protein M28_Spy1138 1144396 - 1144241 - | hypothetical protein TERM 1488 1144366 - 1144377 + g 76 -4.4 -5.08731 | TTCCTAAAATAATCC CTAC AATG GTAG TTTTCTTCTTTCTTA TERM 1489 1144551 - 1144531 - R 100 -9.8 -5.13521 | AAACCACTTAAAAAA CCAATCTC TTTTT GAGATTGG AAACCCTTTTCTTAT sodA 1145168 - 1144563 - | superoxide dismutase holA 1146304 - 1145264 - | DNA polymerase III subunit delta TERM 1490 1146002 - 1146013 + g 79 -3.6 -5.45802 | opp_overlap 1145993, overlap 1145993 TAAATAGGCTTCAAA GGCC TTTA GGTC TTTTTCTTTTAAGAA TERM 1491 1146075 - 1146060 - G 76 -7.6 -4.23213 | opp_overlap 1146059, overlap 1146073 GTGATATCTAACAAA TGGTCA AAAA TGACCA CCTTCTGCTCAGCAA comEC.1 1148261 - 1146375 - | ComE operon protein 3 TERM 1492 1146803 - 1146785 - G 76 -11 -2.5294 | overlap 1146784 1146782 CACTTCCCATAATAG GCAACTGG TCT CCAGCTGC TAAAACCCTAACGTG TERM 1493 1147013 - 1147049 + g 73 -7.2 -4.07568 | GAATTAAGGTTTTCT GAGCATTAGCTACGTG ATGTC CTCGTCGCCAGTGCTC TTTTGAAGAAAAGAA TERM 1494 1147263 - 1147253 - G 89 -5.4 -5.39755 | overlap 1147260 GATAATCATAAAAAA TAGC GAA GCTA ATCACCAAGATAAGC comEC.2 1148617 - 1148258 - | ComE operon protein 3 comEA 1149260 - 1148598 - | ComE operon protein 1 M28_Spy1145 1150277 - 1149459 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 1495 1150666 - 1150637 - gH 70 -2.9 -5.1101 | gap 1, opp_overlap 1150638, overlap 1150638 TGATGATTTAAAAAA CCTCCTAAACCATG TGC CACG-TTCAGGAGT TGATTTGATGCTCTG M28_Spy1144 1150239 - 1151093 + | methyltransferase M28_Spy1146 1151083 - 1151361 + | hypothetical protein TERM 1496 1151379 - 1151355 - T 93 -8 -5.70761 | opp_overlap 1151355 1151344 AAAAGAAAAGAAAAA TCATTGAGAC TTATC ATCTCAATGA TTTTTTTATGCTTCA TERM 1497 1151355 - 1151379 + T 93 -7.3 -5.71983 | opp_overlap 1151355, overlap 1151344 AAAAGAAAAGAAAAA TCATTGAGA CTTATCA TCTCAATGA TTTTTTTATGCTTCA M28_Spy1147 1153385 - 1151385 - | kup system potassium uptake protein TERM 1498 1153509 - 1153476 - R 93 -9.1 -4.37658 | opp_overlap 1153483, overlap 1153483 AACTTTTTCAGAAAA TTAAAAAGAGCTGAC TCTC ATCAACTCTCTTTAA GCTTATTCACCTTTG TERM 1499 1153502 - 1153483 - R 77 -5 -5.1417 | opp_overlap 1153483, overlap 1153476 TCAGAAAATTAAAAA GAGCTGAC TCTC ATCAACTC TCTTTAAGCTTATTC deaD 1155131 - 1153512 - | ATP-dependent RNA helicase prfC 1156982 - 1155438 - | peptide chain release factor 3 TERM 1500 1157193 - 1157166 - R 76 -2.6 -5.40072 | opp_overlap 1157168, overlap 1157167 1157168 1157170 TCTTTTTTAAAAAAA TCGAGCCTGGAA ATCA TCCCAGACTCTT CTTATTATAGCTGAT TERM 1501 1157191 - 1157168 - R 76 -9.6 -2.89655 | opp_overlap 1157168, overlap 1157167 1157166 1157170 TTTTTTAAAAAAATC GAGCCTGGAA ATCA TCCCAGACTC TTCTTATTATAGCTG M28_Spy1150 1157925 - 1157230 - | hypothetical protein murF 1159396 - 1158005 - | UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase TERM 1502 1158444 - 1158457 + g 72 -3.1 -5.05782 | gap 1, opp_overlap 1158429 1158442 1158444, overlap 1158442 TCTGATAAAATATCA GCA-CC ATT GGCTGC TTTTTTCCACTCCGT TERM 1503 1159028 - 1159047 + g 75 -9.4 -3.29704 | overlap 1159025 AGTTTTGTAAGTGGT TGATAGGA CAGC TCCTATCA TATCTTTGGTGGAAG ddl 1160641 - 1159595 - | D-alanyl-alanine synthetase A TERM 1504 1159790 - 1159778 - G 72 -3.3 -5.06414 | overlap 1159785 TTGGGTCAAGAAAAA GTCAC AAC GGGAC AACCCACAACCACCT recR 1161338 - 1160742 - | recombination protein RecR M28_Spy1154 1161576 - 1161385 - | penicillin-binding protein M28_Spy1155 1163017 - 1162136 - | formate transporter TERM 1505 1163010 - 1162979 - G 93 -10.3 -5.01732 | gap 1, opp_overlap 1162979 1162981, overlap 1162981 1162984 AATTTTCCTAAAAAA TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA TTATCATATAACTAT TERM 1506 1163007 - 1162981 - G 90 -13.1 -2.75708 | opp_overlap 1162979 1162981, overlap 1162979 1162984 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1507 1162981 - 1163007 + g 77 -10.9 -2.88069 | opp_overlap 1162981 1162979 1162984, overlap 1162979 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1508 1163004 - 1162984 - G 88 -11.2 -3.52177 | opp_overlap 1162981 1162979, overlap 1162981 1162979 TCCTAAAAAATGCAA GCCCTTTC AACAA GAAAGGGC TCGTCATTATCATAT M28_Spy1156 1163581 - 1163039 - | hypothetical protein TERM 1509 1163535 - 1163524 - G 70 -5.8 -4.42238 | TTATCGGAATCAAAA TCGC AAAT GCGA CCAAAATAGAGGTAT M28_Spy1157 1164263 - 1163742 - | biotin repressor family transcriptional regulator TERM 1510 1164369 - 1164338 - R 89 -11 -3.61902 | opp_overlap 1164346, overlap 1164346 TCTTAGGATATAGAA CCAAAAAACCAGAC CAAA GTCTGGTTTTTAAG TTATTCACCACCAAG TERM 1511 1164361 - 1164346 - R 95 -9 -5.35354 | opp_overlap 1164346, overlap 1164338 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1512 1164346 - 1164361 + r 93 -9 -4.8143 | opp_overlap 1164338 1164346 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1513 1164394 - 1164408 + r 70 -3.6 -4.84274 | overlap 1164395 ACCAAGGTAGTATTC TTTAAC AAT GTTAAG TTTTTCATCTAATTC gpmA 1165065 - 1164370 - | phosphoglyceromutase TERM 1514 1165656 - 1165646 - g 73 -6.8 -4.18094 | GAAACCATTTTAAAA GCCA TCA TGGC TTCAGATTATGAGGG TERM 1515 1165670 - 1165688 + G 71 -6 -4.1822 | GCTTCAGATTATGAG GGTCTAGT GGA ACTAAACC TTTCTTGCCCTAACG pyrD 1165292 - 1166239 + | dihydroorotate dehydrogenase 1A TERM 1516 1166257 - 1166290 + T 100 -12.7 -4.62069 | gap 1, opp_overlap 1166257 TTAATAGTCAAAAAA GCTTGGAAA-TGTGCA CTT TGTACACTTTCCAAGC TTTTTAAAATGGGAA TERM 1517 1166290 - 1166257 - T 100 -14.1 -5.1615 | gap 1, opp_overlap 1166257 TTAATAGTCAAAAAA GCTTGGAAATGTGCAC TTT GTACAC-TTTCCAAGC TTTTTAAAATGGGAA M28_Spy1160 1166467 - 1166294 - | hypothetical protein M28_Spy1161 1168401 - 1166539 - | lead, cadmium, zinc and mercury transporting ATPase TERM 1518 1168743 - 1168702 - R 100 -11.1 -5.56264 | opp_overlap 1168705 1168706, overlap 1168705 1168706 CCCAAATATAAAAAA GAACCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGATTT TTCTAGACGAATTAT TERM 1519 1168740 - 1168705 - R 100 -12.8 -4.8277 | opp_overlap 1168705 1168706, overlap 1168702 1168706 AAATATAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1520 1168705 - 1168740 + r 77 -6.2 -4.83169 | opp_overlap 1168705 1168702 1168706, overlap 1168706 AAATATAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1521 1168739 - 1168706 - R 100 -14.1 -3.46002 | opp_overlap 1168705 1168706, overlap 1168705 1168702 AATATAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA TERM 1522 1168706 - 1168739 + r 81 -9.7 -3.49419 | opp_overlap 1168706 1168705 1168702, overlap 1168705 AATATAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA M28_Spy1162 1169030 - 1168755 - | DNA-binding protein HU M28_Spy1163 1169716 - 1169129 - | hypothetical protein TERM 1523 1169459 - 1169481 + g 80 -2 -5.59357 | opp_overlap 1169459 CAAAATAGAAGAAGA TGTCGCATAA AAT TTATAAGACA TTTTTTTAGTCTGAT M28_Spy1164 1170554 - 1169694 - | lipase/acylhydrolase M28_Spy1165 1171380 - 1170529 - | DegV family protein TERM 1524 1170734 - 1170746 + gr 74 -4.9 -4.67982 | overlap 1170741 AGGTAACTATCTAAC CATTT CGT AAATG TTTTATTACCTCGAC TERM 1525 1171568 - 1171527 - R 74 -5.9 -4.64591 | gap 1, opp_overlap 1171527 TAACGAGATACAAAA CGAGGCAAAAGT-CAACCTT TTC ACGCTTGAACATTTGCCCCG TCTTTTACAACTACA M28_Spy1166 1172537 - 1171596 - | hypothetical protein TERM 1526 1171692 - 1171702 + g 83 -3.2 -5.61881 | CTCCTCTCCCGTTTG TGGC AGG GCTA TTTTTCTTTTTGCAA recN 1174373 - 1172709 - | DNA repair protein TERM 1527 1172880 - 1172866 - G 77 -5 -4.99043 | overlap 1172868 TCTTTAGAAATAAAA TACTGA TAA TCAGCA ATAGCAATAACTTGA TERM 1528 1173255 - 1173302 + g 71 -4.1 -4.86033 | opp_overlap 1173283, overlap 1173249 1173284 TTCTAATTGCTCTGC CAATTGATGGCGGCGTTCACT CAAGTT AGTGGCTGCAGCAACCAATTG TTTTTCTAAGGCTTT argR1 1174895 - 1174392 - | arginine repressor TERM 1529 1174770 - 1174747 - GR 76 -9.6 -2.84325 | opp_overlap 1174750, overlap 1174744 1174742 TCTCTTGAAATAGTA GCCTGGGTTA ATTC TAACCCATGC TCTGCCAATAATCTT M28_Spy1169 1175676 - 1174849 - | hemolysin fps 1176541 - 1175669 - | dimethylallyltransferase xseB 1176756 - 1176541 - | exodeoxyribonuclease VII small subunit TERM 1530 1176580 - 1176593 + g 76 -3.1 -5.25803 | GCCATCAGCTTGCAT CACTT TGAC GAGTG TTTTTTCTGCCGCTT xseA 1178089 - 1176734 - | exodeoxyribonuclease VII large subunit TERM 1531 1177864 - 1177879 + g 80 -4.7 -5.26316 | TTTTCATGCCTTCTT CTAGG TCGAAT CCTAG TTTTTTATAGACTCC TERM 1532 1178193 - 1178174 - R 91 -2.8 -5.98675 | opp_overlap 1178175, overlap 1178175 CAGAAAAACAAAAAA GGAAGCCA TTGC TGACTTCT TATATTCTCTTATGT TERM 1533 1178192 - 1178175 - R 71 -6.3 -4.15545 | opp_overlap 1178175, overlap 1178174 AGAAAAACAAAAAAG GAAGCCA TTGC TGACTTC TTATATTCTCTTATG folD 1179087 - 1178227 - | methenyltetrahydrofolate cyclohydrolase M28_Spy1174 1180992 - 1179289 - | phosphoglucomutase TERM 1534 1179721 - 1179735 + g 73 -7.8 -3.85698 | opp_overlap 1179721 TACAATCATCATAGA GGCGCT AAC AGCGTC TTTGTCACGAACAAA TERM 1535 1180402 - 1180418 + g 71 -5.1 -4.63675 | overlap 1180399 1180403 AAGTCCACTGTCCAG AGCCTTT TCA AAAGGCA TTTGTTTGATTTCCT TERM 1536 1180403 - 1180417 + g 70 -8.6 -3.36578 | overlap 1180402 1180399 AGTCCACTGTCCAGA GCCTTT TCA AAAGGC ATTTGTTTGATTTCC phr 1182594 - 1181161 - | deoxyribodipyrimidine photolyase TERM 1537 1181439 - 1181423 - G 90 -10.9 -4.2142 | AATATTCTAAAATAA GGAACAG CAT CTGTTCC AGTGGAAGCAGCCCA TERM 1538 1182662 - 1182704 + r 100 -24 -3.14463 | opp_overlap 1182662 1182670, overlap 1182670 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TGA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1539 1182704 - 1182662 - R 100 -24 -3.73968 | opp_overlap 1182662 1182670, overlap 1182670 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TGA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1540 1182696 - 1182670 - R 100 -16.8 -4.63172 | opp_overlap 1182670 1182662, overlap 1182662 TAGCAAATTATAAAA GGAAGTCCTAAA TGA TTTAGGACTTCC TTTTATAATTCATAG TERM 1541 1182670 - 1182696 + r 100 -16.8 -4.56607 | opp_overlap 1182662 1182670, overlap 1182662 TAGCAAATTATAAAA GGAAGTCCTAAA TGA TTTAGGACTTCC TTTTATAATTCATAG artP 1183456 - 1182719 - | arginine transport ATP-binding protein artQ 1184139 - 1183453 - | arginine transport system permease protein TERM 1542 1184254 - 1184224 - R 83 -10.6 -3.30007 | opp_overlap 1184230 1184232 1184250, overlap 1184232 AATACTTTTTGACAA TAAAAAAACCTGCC TCA GGCAAGTCTCTTTA CTATGTCAAGCTTAA TERM 1543 1184246 - 1184232 - R 100 -7.8 -5.88565 | opp_overlap 1184232 1184230, overlap 1184224 TTGACAATAAAAAAA CCTGCC TCA GGCAAG TCTCTTTACTATGTC M28_Spy1178 1184496 - 1184266 - | putative cytoplasmic protein clpE 1184794 - 1187076 + | ATP-dependent Clp protease ATP-binding subunit TERM 1544 1187085 - 1187112 + F 77 -5.6 -5.01546 | opp_overlap 1187087 1187089 1187102, overlap 1187087 AGATTAACGTTAGCT AAGAGAGTTTCT ATAA GGAGACTCTCTC TTTTTCTATCAATTT TERM 1545 1187087 - 1187110 + F 81 -8.2 -4.11744 | opp_overlap 1187087 1187089 1187102, overlap 1187085 ATTAACGTTAGCTAA GAGAGTTTCT ATAA GGAGACTCTC TCTTTTTCTATCAAT mutT 1187204 - 1187659 + | mutator protein (7,8-dihydro-8-oxoguanine-triphosphatase) M28_Spy1181 1187710 - 1188012 + | putative cytoplasmic protein TERM 1546 1188061 - 1188038 - T 100 -10.4 -4.55287 | opp_overlap 1188038 GCTATTCAGACAAAA CTTAGCCCTT CTAA AAGAGCTAAG TTTTTTTATTAGCGA TERM 1547 1188038 - 1188061 + T 100 -8.2 -5.7946 | opp_overlap 1188038 GCTATTCAGACAAAA CTTAGCCCTT CTAA AAGAGCTAAG TTTTTTTATTAGCGA TERM 1548 1188236 - 1188213 - T 100 -11 -5.14965 | opp_overlap 1188213 AGCTCTACTAAAAAA CCATCAGGCC CTAA GACCCGATGG TTGTCTTCTTACTCA TERM 1549 1188264 - 1188276 + T 71 -6.3 -4.10188 | TCAGTGTCACTTCAA GTCTT GAT AAGAC TTATTTGTCACTCTC ileS 1191078 - 1188277 - | isoleucyl-tRNA synthetase divIVAS 1192109 - 1191351 - | cell division initiation protein DivIVA M28_Spy1184 1192910 - 1192119 - | RNA binding protein M28_Spy1185 1193164 - 1192910 - | integral membrane protein M28_Spy1186 1193837 - 1193169 - | putative cytoplasmic protein M28_Spy1187 1194508 - 1193837 - | pyridoxal-5'-phosphate family protein ftsZ 1195830 - 1194511 - | cell division protein FtsZ ftsA 1197218 - 1195854 - | cell division protein TERM 1550 1197215 - 1197204 - G 73 -2.2 -5.243 | CAAACCAGTAAAAAA GCCA TTTC TAGC CATTCACTTGACCTC TERM 1551 1197330 - 1197309 - R 100 -10.3 -5.69473 | opp_overlap 1197309 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA TERM 1552 1197309 - 1197330 + r 100 -10.3 -5.60689 | opp_overlap 1197309 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA divIB 1198578 - 1197430 - | cell division protein TERM 1553 1198366 - 1198376 + g 73 -5.4 -4.49344 | TTCTGACTCAATTTC CTGA CTA TCAG TTTTCTCATCAGTTT TERM 1554 1198402 - 1198414 + g 71 -6.3 -4.20696 | overlap 1198395 AGTTTTAAGCTCAAC TGCTT CAG AAGCA TTTTGAGCTTGCTGC murG 1199682 - 1198579 - | N-acetylglucosaminyl transferase murD 1201019 - 1199661 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 1555 1201332 - 1201303 - R 100 -9.5 -5.2189 | gap 1, opp_overlap 1201298 1201303 TGAACTATTAAAAAA GGACTGATATTGTC TAA AACAA-ATCAGTCC TTTTATCGTATAAAA TERM 1556 1201303 - 1201332 + r 89 -8.8 -4.50976 | gap 1, opp_overlap 1201303, overlap 1201298 TGAACTATTAAAAAA GGACTGATATTGT CTAAA ACAA-ATCAGTCC TTTTATCGTATAAAA M28_Spy1193 1201626 - 1201375 - | hypothetical protein TERM 1557 1201717 - 1201673 - R 78 -10.4 -2.76737 | opp_overlap 1201674 TAGGAACTTGTAAAC GCAAAAAGACCTTTAAAAAA TGACT TTTCTTAAATATCTTTTTGC TATTTTATTTAGTTA typA 1203589 - 1201748 - | GTP-binding protein TypA/BipA M28_Spy1195 1204161 - 1203772 - | rhodanese-related sulfurtransferase glcK 1205142 - 1204171 - | glucokinase M28_Spy1197 1205368 - 1205147 - | putative cytoplasmic protein TERM 1558 1205322 - 1205305 - G 83 -4.9 -5.33026 | opp_overlap 1205305 CAAGGTAAACAAAAA TGCCAAA GTTT TTTAGCA ATTGTTGCACATCAT TERM 1559 1205469 - 1205446 - R 84 -6.1 -5.26316 | opp_overlap 1205446 TGATTCCATAAAAAA GAAGCCAAT TTTATC ATTGACTTC TTTTATCCTAAGGCA dpr 1206019 - 1205492 - | ferroxidase TERM 1560 1205518 - 1205538 + g 70 -2.5 -5.04385 | overlap 1205521 1205522 GGCCTTGTCCACGCT CTGCTTGGA GCA TCCAAATGG TTTTTTCAGCCTCTG TERM 1561 1205761 - 1205751 - G 73 -8.2 -3.80733 | GCTAGGGTAGAATAA GGCG CTC CGCC AATAGTGATCAAACG M28_Spy1199 1206247 - 1206873 + | prepilin peptidase family protein TERM 1562 1206908 - 1206887 - T 95 -8.8 -5.37043 | opp_overlap 1206886 1206885 AGGCCAGATAAAAAA CCTAGTCA TTTTAG TGACTAGG AATATTTTGTCATCA M28_Spy1200 1208034 - 1206955 - | radical SAM protein TERM 1563 1207328 - 1207312 - G 71 -9.5 -2.80545 | overlap 1207311 1207309 TATAGCTGAAAAGAG CTTTTCC AGC GGAAAAG AGCGATTTACTCGCA M28_Spy1201 1208682 - 1208038 - | transcriptional regulator TERM 1564 1208634 - 1208645 + g 70 -3 -5.14819 | TATTATAGTTGTACA TTTC TGGC GAAA TTTCTTTTTTCATTT M28_Spy1202 1209075 - 1208953 - | hypothetical protein M28_Spy1203 1210131 - 1209106 - | ribose operon repressor TERM 1565 1210441 - 1210393 - R 76 -4.5 -5.08824 | opp_overlap 1210393 1210394, overlap 1210394 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTTATGAGTTA TERM 1566 1210393 - 1210441 + r 85 -4.5 -5.66684 | opp_overlap 1210393 1210394, overlap 1210394 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTTATGAGTTA TERM 1567 1210440 - 1210394 - R 73 -8 -3.64812 | opp_overlap 1210393 1210394, overlap 1210393 TTTTATGTAAAAAAT GATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACC GTTTTTTTATGAGTT M28_Spy1204 1211535 - 1210498 - | ATP-dependent protease La TERM 1568 1210694 - 1210665 - G 70 -5.7 -4.36592 | opp_overlap 1210665, overlap 1210668 TCGGAACAAAAAATA TATCTGCACCAGC TTCA GCTGCTGCAACTA CTTTAAGACCTGCAC coaD 1212013 - 1211522 - | phosphopantetheine adenylyltransferase M28_Spy1206 1212542 - 1212003 - | methyltransferase asnA 1213657 - 1212665 - | asparagine synthetase AsnA TERM 1569 1213838 - 1213805 - R 100 -14.9 -4.37711 | opp_overlap 1213810, overlap 1213810 CTATCAAAGCTAAAA GAAAAGGCTAATTCT CAAT AAAATTAGCCTTTTC TAATACTACTATTGT TERM 1570 1213833 - 1213810 - R 95 -9 -5.14698 | opp_overlap 1213810, overlap 1213805 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTACT TERM 1571 1213810 - 1213833 + r 76 -6.8 -4.49311 | opp_overlap 1213810 1213805 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTACT arcC 1214920 - 1213970 - | carbamate kinase M28_Spy1209 1216271 - 1214940 - | hypothetical protein M28_Spy1210 1217781 - 1216288 - | arginine/ornithine antiporter TERM 1572 1217857 - 1217811 - R 83 -7.5 -4.83169 | gap 2, opp_overlap 1217811 1217814, overlap 1217814 ACCTTTTCATAAAAA TAAGCCGTTCTAGTT-CCG-GTC AAG GACGCGAAAACCAGAACGACTTG TCATGTAGTTAAAGT TERM 1573 1217854 - 1217814 - R 93 -9.2 -4.52873 | gap 2, opp_overlap 1217811 1217814, overlap 1217811 TTTTCATAAAAATAA GCCGTTCTAGTT-CCG-GTC AAG GACGCGAAAACCAGAACGAC TTGTCATGTAGTTAA arcB 1218964 - 1217951 - | ornithine carbamoyltransferase M28_Spy1212 1219432 - 1219004 - | acetyltransferase TERM 1574 1219088 - 1219101 + g 71 -5.3 -4.56775 | GTCCATATTCTTCTC CCATT TAAG AATGG TTTTTGCAAGGGACT arcA 1220767 - 1219532 - | arginine deiminase TERM 1575 1219987 - 1220000 + g 70 -3.1 -4.87803 | overlap 1219988 CAAAGGCCAATACTT TCTTG AAGC CAAGG TTTTGTTTAAAGATG M28_Spy1214 1221721 - 1221041 - | Crp family transcriptional regulator TERM 1576 1221598 - 1221608 + g 70 -3.2 -4.87318 | CTCCCTCAAAAAAAA GGAT ATG GTCC TTTTTAGCTTTTCGG ahrC.2 1221863 - 1222336 + | arginine repressor TERM 1577 1222459 - 1222416 - T 83 -6.9 -4.75404 | gap 1 AAATCTCATCAAAAA GCGAGTAAACAAA-AACCTA AATGA CAGGACATTCGTTTACTCGC TTTTTTGTTAACCTT M28_Spy1216 1223218 - 1222502 - | hypothetical protein M28_Spy1217 1224310 - 1223222 - | putative cytoplasmic protein M28_Spy1218 1226116 - 1224383 - | two-component sensor kinase TERM 1578 1224490 - 1224505 + g 73 -7.6 -4.10161 | TGGTCATGTGGTAGC CTTCAC CATA GTGAAG TTTTAACCGCTGGTC M28_Spy1219 1226853 - 1226113 - | two-component response regulator TERM 1579 1226801 - 1226827 + g 73 -9.5 -3.25192 | opp_overlap 1226801, overlap 1226799 1226805 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1580 1226827 - 1226801 - G 91 -11.7 -4.12947 | opp_overlap 1226801 1226799 1226805 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1581 1226893 - 1226878 - R 73 -7.5 -3.87815 | opp_overlap 1226878 CCTTATCTTTATAAA GGGCC TTGCAT GGCCC TCTCATACTAGTCTT TERM 1582 1227080 - 1227093 + r 86 -5.3 -5.76237 | AGCATCTGATTTCGG GACTT GGAA AAGTC TTTTTTATTTGTCTA M28_Spy1220 1227280 - 1227098 - | phage protein TERM 1583 1227332 - 1227311 - R 100 -10.9 -4.11692 | opp_overlap 1227311, overlap 1227314 TATTTATTCGTAAAA GAAGAGGGA GACC CCCCTCTTC TTTTTTGTTAAACTA TERM 1584 1227311 - 1227332 + r 100 -10.2 -5.46657 | opp_overlap 1227311 1227314 TATTTATTCGTAAAA GAAGAGGG AGACCC CCCTCTTC TTTTTTGTTAAACTA TERM 1585 1227326 - 1227314 - R 75 -6.9 -4.18506 | opp_overlap 1227311, overlap 1227311 TTATTCGTAAAAGAA GAGGG AGA CCCCC CTCTTCTTTTTTGTT M28_Spy1221 1227632 - 1227345 - | hypothetical protein slaA 1228201 - 1227626 - | streptococcal phospholipase A2 TERM 1586 1228535 - 1228566 + r 79 -10.2 -2.78266 | opp_overlap 1228540, overlap 1228540 TTCCTTAAAAAACAC AAAAACCGCCCAGA ATTA TCTGAGCGGTTTTG TCATATTCCTCGGTT TERM 1587 1228561 - 1228540 - R 100 -12.3 -5.41787 | opp_overlap 1228540 1228535 TAAAAAACACAAAAA CCGCCCAGA ATTA TCTGAGCGG TTTTGTCATATTCCT TERM 1588 1228540 - 1228561 + r 100 -10.1 -4.55625 | opp_overlap 1228540, overlap 1228535 TAAAAAACACAAAAA CCGCCCAGA ATTA TCTGAGCGG TTTTGTCATATTCCT speK 1229471 - 1228677 - | exotoxin type K precursor TERM 1589 1229751 - 1229730 - R 100 -9.4 -5.36441 | opp_overlap 1229730 TTTGCACACAAAAAA CCGCCCTC AATCAA GAGAGCGG TTGGTTTTTTATTTA TERM 1590 1229730 - 1229751 + r 73 -7.2 -4.07772 | opp_overlap 1229730 TTTGCACACAAAAAA CCGCCCTC AATCAA GAGAGCGG TTGGTTTTTTATTTA M28_Spy1224 1230626 - 1229760 - | phage protein M28_Spy1225 1231138 - 1230614 - | phage protein TERM 1591 1230690 - 1230702 + g 73 -7.7 -3.91332 | GTATATTTAATTCCT TGGAC ACC GTCCA TTATTCTATCCTCAT TERM 1592 1231268 - 1231244 - R 89 -7 -5.23316 | opp_overlap 1231245 1231246, overlap 1231246 TAGGATACCAAAAAA CAGCCCTCGC AAAAA GCGAGGGCAT TTGTCTTATCTAATT TERM 1593 1231245 - 1231267 + r 100 -10.5 -4.31766 | opp_overlap 1231244 1231246, overlap 1231246 AGGATACCAAAAAAC AGCCCTCGC AAAAA GCGAGGGCA TTTGTCTTATCTAAT TERM 1594 1231246 - 1231266 + r 95 -14 -3.17975 | opp_overlap 1231246 1231244, overlap 1231245 GGATACCAAAAAACA GCCCTCGC AAAAA GCGAGGGC ATTTGTCTTATCTAA TERM 1595 1231266 - 1231246 - R 100 -14 -4.23988 | opp_overlap 1231245 1231246, overlap 1231244 GGATACCAAAAAACA GCCCTCGC AAAAA GCGAGGGC ATTTGTCTTATCTAA M28_Spy1226 1232480 - 1231278 - | phage-associated cell wall hydrolase TERM 1596 1231451 - 1231472 + g 84 -12.3 -2.94062 | opp_overlap 1231449 AGATACCTACAACCT CGCTGGCTA GACT TGGCCAGCG TCTGATATTGATCTC TERM 1597 1231670 - 1231683 + g 71 -5.3 -4.63932 | CATATAAGGCGTCTG CATTG CCAT CAATG TTTTGTTCAACAGTC M28_Spy1227 1232776 - 1232591 - | phage protein M28_Spy1228 1233069 - 1232773 - | phage protein TERM 1598 1232951 - 1232979 + g 85 -6.8 -5.01732 | gap 1 GAGTCCTTGAGTTGA GCCATGGCAAACT CATT AGCTT-CCATGGC TTTTTTAAAGGGATT M28_Spy1229 1233691 - 1233080 - | phage protein M28_Spy1230 1234125 - 1233694 - | phage protein M28_Spy1231 1236023 - 1234137 - | phage protein TERM 1599 1234645 - 1234621 - G 74 -6.5 -4.32034 | overlap 1234625 GCATTACTATTAAAA TCCATCTTAGC CGA GCTAAGATCAA TAAGCATAGCGCCAT TERM 1600 1234641 - 1234625 - G 71 -9.5 -2.78495 | overlap 1234621 TACTATTAAAATCCA TCTTAGC CGA GCTAAGA TCAATAAGCATAGCG TERM 1601 1234877 - 1234890 + g 71 -5.3 -4.59511 | TGACAGTGGTATTGC CATCA AGAG TGATG TTTTTACCAGCTATT TERM 1602 1235497 - 1235507 + g 71 -6.8 -4.09864 | CCGATTTTATCATTG GCCA TTG TGGC TTTTAGCCCCTCAAT M28_Spy1232 1236363 - 1236034 - | phage protein TERM 1603 1236214 - 1236203 - G 74 -4.4 -4.86001 | opp_overlap 1236203 ACGATTTTATAAAAA GGAT AAAT ATCC AATTTTTTCCCAGCG TERM 1604 1236301 - 1236279 - G 82 -10.8 -3.5947 | opp_overlap 1236276 AACGCTGATAGACAA TCGTATTATT ACA AATAATACGA TCAATCGTTTTGTTA M28_Spy1233 1237564 - 1236350 - | hyaluronoglucosaminidase TERM 1605 1236510 - 1236486 - G 76 -10.8 -2.63596 | opp_overlap 1236484 TGTGACTGTATATCA GCTTGTCTGA GATAG CCAGACAAGC GCTCATTAAGACCAG TERM 1606 1237035 - 1237053 + g 73 -10.4 -2.80975 | overlap 1237034 ACACGCTTGTGATTT GTGATAGT AAT ACTATCAC CTTTAGGTCCTGACT TERM 1607 1237226 - 1237246 + g 77 -8.3 -3.82218 | overlap 1237238 GTCGTCTGATAGTTT GATAGTGAG TGT CTCACCATC TTTGGTGATGTCGGT M28_Spy1234 1239708 - 1237561 - | phage endopeptidase TERM 1608 1237678 - 1237690 + g 83 -9.1 -4.03234 | AAGAGCTAATTCCTG CGCCT CTG AGGCG TTTATCTCCACAGAC TERM 1609 1238829 - 1238862 + g 100 -8.1 -5.98675 | CCTTAAGGTATTTCT GAGCCAGCTTTCGGA TTTC TTCGATCGTTGGCTC TTTTTTATTTTTGTC TERM 1610 1239389 - 1239402 + g 71 -6.7 -4.09243 | GCTCCTACGCTCGCA CCGTT TACA AACGG TTTTAAAGCAATATC M28_Spy1235 1240421 - 1239705 - | phage protein M28_Spy1236 1243699 - 1240418 - | phage protein TERM 1611 1240629 - 1240669 + gr 100 -11.4 -4.53303 | gap 1, opp_overlap 1240627 GGGGTCGCATTAATC GTCATTGACTCTTTTA-GC TTTT GCATAGATGAGTCAATGAC TTTTCTATCCGCATC TERM 1612 1241087 - 1241074 - GR 72 -8.1 -3.46647 | opp_overlap 1241085, overlap 1241072 CGTACTCAGTAAATA CTCGC GATG GCGAG TGGATACCCAACTCT TERM 1613 1243044 - 1243064 + gr 76 -4.7 -5.02074 | opp_overlap 1243044 1243045, overlap 1243045 AACTTATTAGAAAAT TGGTCAAAT GTT ATTTGCCCG TTTTTTAACGCCTCA M28_Spy1237 1244249 - 1243668 - | phage protein M28_Spy1238 1244687 - 1244253 - | phage protein TERM 1614 1244720 - 1244703 - R 79 -8.4 -4.08064 | opp_overlap 1244692 1244703 AATTCCTCCTTAAAA GGGTGG TTTAGC CCACCC TTGTCTCACATCGCT TERM 1615 1244703 - 1244720 + r 72 -8.4 -3.50572 | opp_overlap 1244703, overlap 1244692 AATTCCTCCTTAAAA GGGTGG TTTAGC CCACCC TTGTCTCACATCGCT M28_Spy1239 1245211 - 1244726 - | major tail shaft protein M28_Spy1240 1245609 - 1245211 - | minor capsid protein TERM 1616 1245455 - 1245475 + g 71 -6.9 -4.01381 | GGCAGGCTTATCTCA CGAGTAC CGTCCAT GTACTCG TTATTTACCTTACCT M28_Spy1241 1245962 - 1245606 - | minor capsid protein M28_Spy1242 1246321 - 1245962 - | minor capsid protein TERM 1617 1246224 - 1246206 - GR 93 -9.6 -4.18401 | GGAGAGAGTGTAAAA GGTTCGTC ATA GACAAACC CTCCATAATCACCTT M28_Spy1243 1246700 - 1246284 - | phage protein TERM 1618 1246442 - 1246468 + gr 73 -9.5 -2.80195 | opp_overlap 1246439 1246449, overlap 1246439 1246444 GTCCTAGAGATATTC CAGCAAAGGAT TGTTT ATCCTCTGCTG TCATTACTCCTGAGT TERM 1619 1246598 - 1246610 + gr 77 -4.8 -4.95854 | opp_overlap 1246592 AGTAAAGATTGACAG CGTG GCTAG CACG TTTTTCCATTTTTTC M28_Spy1244 1247572 - 1246754 - | major head protein TERM 1620 1247520 - 1247540 + g 72 -9.7 -2.97721 | overlap 1247519 GCGTCAATCATATCC GCTAGAACC TCA GGGTCTAGC ATTTGTGCCATTTTA M28_Spy1245 1248190 - 1247576 - | phage protein TERM 1621 1247905 - 1247920 + g 78 -7.6 -4.3453 | CCTTATTGTTTGCCC GAGCTT CCTC AAGCTC TTTGTCTTTAGCATT TERM 1622 1248276 - 1248261 - R 82 -5.4 -5.21236 | opp_overlap 1248261 AAGGCATAATAAAAA GCCGTA TTGC TACGAC TTTGATTTCTAAAGG M28_Spy1246 1248582 - 1248316 - | phage protein M28_Spy1247 1248883 - 1248644 - | phage protein M28_Spy1248 1250333 - 1248855 - | minor capsid protein M28_Spy1249 1251948 - 1250338 - | minor capsid protein TERM 1623 1251070 - 1251085 + gr 75 -9 -3.35176 | opp_overlap 1251070 1251068 1251066, overlap 1251060 GTTATCAAAGATAGA TAGCCC AAGT GGGCTA TTAATATCCTTGTTA TERM 1624 1251085 - 1251070 - GR 73 -9 -3.21269 | opp_overlap 1251060 1251070, overlap 1251068 1251066 GTTATCAAAGATAGA TAGCCC AAGT GGGCTA TTAATATCCTTGTTA M28_Spy1250 1253065 - 1251854 - | terminase large subunit TERM 1625 1252873 - 1252885 + gr 77 -4.8 -4.88405 | opp_overlap 1252865 TTAACAAGTGATCTC CACG CTCGT CGTG TTTTATTTCGCAGTT TERM 1626 1252978 - 1252988 + gr 71 -5.4 -4.46656 | opp_overlap 1252977 1252974, overlap 1252984 CTTGATTATAAGCAG TCAC AAG GTGA TTTTCATCTTCTGAC TERM 1627 1253100 - 1253115 + r 87 -6.8 -5.5454 | opp_overlap 1253100 ATTCGTAGTTAAAAT GGCGTC TAAT GACGTC TTTTTGTTTATTTGA M28_Spy1251 1253675 - 1253148 - | phage protein TERM 1628 1253670 - 1253656 - G 100 -5.7 -6.20267 | TTAAAAATAAAAAAA GAAGC AATCA GCTTC TTCAAATCGTTTTAT M28_Spy1252 1254049 - 1253672 - | phage transcriptional regulator M28_Spy1253 1254379 - 1254110 - | phage protein M28_Spy1254 1255179 - 1254502 - | ABC transporter ATP-binding protein M28_Spy1255 1255676 - 1255158 - | ParB-like protein TERM 1629 1255724 - 1255706 - H 100 -9.6 -5.24796 | opp_overlap 1255706 TTTACATAATAAAAA GTCACCAC AAT GTGATGAC TAATTGGTTAACTAT M28_Spy1256 1255757 - 1256014 + | phage protein M28_Spy1257 1256507 - 1256286 - | phage protein M28_Spy1258 1257105 - 1256653 - | phage protein TERM 1630 1257144 - 1257162 + r 82 -4.5 -5.54907 | overlap 1257138 AAATTTAACCAAGGG GGCGTTC CGTGT GGACGTC TTTTTGTTTTGTGGA M28_Spy1259 1258040 - 1257534 - | phage protein M28_Spy1260 1258207 - 1258037 - | phage protein TERM 1631 1258085 - 1258071 - G 83 -6.4 -5.04987 | AATACTTTTAAAAAA CACTGC TCA GCAATG ACTTGATCACTGCCT M28_Spy1261 1258608 - 1258204 - | phage protein M28_Spy1262 1258917 - 1258618 - | phage protein M28_Spy1263 1259168 - 1258884 - | phage protein M28_Spy1264 1259413 - 1259162 - | phage protein M28_Spy1265 1259766 - 1259410 - | phage protein M28_Spy1266 1260203 - 1259763 - | phage protein TERM 1632 1259874 - 1259888 + g 73 -5.6 -4.63542 | CTCTGATTTTGATAT GCTGTC ATA GACTGC TTTTTCAAGATTGTC M28_Spy1267 1260406 - 1260203 - | phage protein ssb2.1 1260831 - 1260412 - | phage single-strand DNA binding protein TERM 1633 1260634 - 1260652 + g 73 -7.5 -4.08394 | GATCAAAGCACCTTT TTTAGCC CAGTT GGCTAAA TTTTCAGCAGACTGT ssb1 1261498 - 1260824 - | phage single-strand DNA binding protein M28_Spy1270 1261981 - 1261499 - | phage protein TERM 1634 1261777 - 1261792 + g 74 -6.2 -4.45259 | CTTCTGCTTGCTTTT GCTTTT TGTA AAAAGC TTCTTTTTCGGCTTT M28_Spy1271 1262278 - 1262003 - | phage protein M28_Spy1272 1262408 - 1262268 - | phage protein M28_Spy1273 1262638 - 1262405 - | phage protein M28_Spy1274 1263032 - 1262619 - | DnaD-like protein M28_Spy1275 1263411 - 1263154 - | phage replication protein M28_Spy1276 1263690 - 1263505 - | phage protein M28_Spy1277 1264063 - 1263719 - | phage protein TERM 1635 1264028 - 1264045 + g 100 -7.7 -5.59357 | ATAGTATTCTTTAGA GTCCGAT TGCC GTCGGAC TTTTTTTGATATAAT M28_Spy1278 1264476 - 1264222 - | phage protein TERM 1636 1264316 - 1264338 + g 84 -7.8 -4.76874 | opp_overlap 1264320 GATAACTCCTCTTTA GACATCAG CTTGAGA CTGATGTC TTTTGCTTTTCTGTT TERM 1637 1264673 - 1264697 + r 100 -12.9 -4.86731 | opp_overlap 1264675 TTGTCTAATCTAGTA GAGTTCCGCTC ACT GGGTGGAACTC TTTTGTTTCCACAAG M28_Spy1279 1264811 - 1264662 - | phage protein M28_Spy1280 1265572 - 1264844 - | phage antirepressor protein M28_Spy1281 1265774 - 1265583 - | phage protein TERM 1638 1266196 - 1266224 + H 77 -3.1 -5.4505 | opp_overlap 1266189, overlap 1266189 ATAAAAACTTGTAAA CACTTTCCAATGT GTA ATAACGGAGAGTG TTTTTTATTGAGCAG TERM 1639 1266254 - 1266280 + H 100 -10.2 -5.35224 | GAATAATTTCCGTAG CACCATCTAGAT AGC AGCTAGGTGGTG TTTTATTTTTGTAAG TERM 1640 1266376 - 1266396 + H 70 -4.1 -4.66537 | opp_overlap 1266378, overlap 1266378 GGCATAAGAAAAACC TAGTTATAA CCT TTATAACTC TTTTATATTGCGCAG TERM 1641 1266851 - 1266828 - g 82 -3.8 -5.47821 | opp_overlap 1266834, overlap 1266830 1266831 ATCGATCTAAAAAAA GATGCAGAAG AAAC CTTCTTCTTC GACGGACACGAACTC M28_Spy1282 1266570 - 1266929 + | Cro/CI family phage transcriptional regulator TERM 1642 1267053 - 1267039 - g 78 -2.8 -5.45652 | overlap 1267045 ATGTTTAATAAAAAA CACAAC GTC ATTGCG ATTGACACTTATCTT M28_Spy1283 1266943 - 1267323 + | phage protein M28_Spy1284 1267334 - 1267855 + | phage protein TERM 1643 1268073 - 1268055 - g 78 -3.9 -5.28755 | gap 1, overlap 1268058 AAATACACTAAAAAA GAT-GGCA CAAC TGCCTATC GCTTAAGAGCATACC M28_Spy1285 1267971 - 1269128 + | DNA integration/recombination/invertion protein msrA 1270345 - 1269239 - | bifunctional methionine sulfoxide reductase A/B protein TERM 1644 1269717 - 1269740 + g 74 -3.8 -5.08601 | opp_overlap 1269723, overlap 1269709 1269723 GTCGCTTGGTTGATG TCAATATGGC AGTA GCCATTTGGA TTTTTCTTGAGGTAA tlpA 1271011 - 1270388 - | thiol:disulfide interchange protein ccdA 1271734 - 1271024 - | cytochrome c-type biogenesis protein TERM 1645 1271862 - 1271888 + r 93 -13 -3.47029 | opp_overlap 1271862, overlap 1271856 AAAGGCATGTAAAAA CCCGACCTCATT AAA AGAGAGGTCGGG TTCATCTTTCAATCC TERM 1646 1271888 - 1271862 - R 100 -10.9 -4.69027 | opp_overlap 1271862 1271856 AAAGGCATGTAAAAA CCCGACCTC ATTAAAAGA GAGGTCGGG TTCATCTTTCAATCC TERM 1647 1271923 - 1271905 - R 77 -10.3 -2.52896 | opp_overlap 1271903 1271907 TCATCTTTCAATCCA CTCACCC ATGAA GGGTGAG ACTATGTGGGTGTAT TERM 1648 1271989 - 1271971 - R 77 -10.3 -2.53995 | ATTTATTTCAATCCA CTCACCC ATGAA GGGTGAG ACTGCGCCAAATGAC M28_Spy1289 1272433 - 1272140 - | putative cytoplasmic protein TERM 1649 1272253 - 1272233 - G 70 -2.5 -5.09762 | overlap 1272235 CCCCAATAAATAAAA GCGAATACT ATC AGTTTTCTC ATCAATGATTTGTGT M28_Spy1290 1273469 - 1272444 - | hypothetical protein TERM 1650 1272612 - 1272602 - G 76 -3.2 -5.25906 | ACAAATCAATAAAAA TAGC TCT GCCA TTTTCCGTCATTAAA M28_Spy1291 1274140 - 1273466 - | hypothetical protein M28_Spy1292 1275005 - 1274142 - | putative cytoplasmic protein M28_Spy1293 1276890 - 1274995 - | hypothetical protein M28_Spy1294 1277618 - 1276890 - | hypothetical protein M28_Spy1295 1280159 - 1277751 - | ATP-dependent RNA helicase TERM 1651 1278558 - 1278577 + g 71 -9.4 -2.85585 | opp_overlap 1278557 1278558 CATATTTGTCGAAAG CTGATAGA CCGG TCTATCAG TAATGTCTTTTAGCA TERM 1652 1278577 - 1278558 - G 70 -9.4 -2.72829 | opp_overlap 1278558, overlap 1278557 CATATTTGTCGAAAG CTGATAGA CCGG TCTATCAG TAATGTCTTTTAGCA TERM 1653 1278983 - 1278995 + g 72 -3.4 -5.07652 | AACTTGAAAAACGTC TCAG ATTAG CTGA TTTTGTTTTGAAAAG TERM 1654 1280306 - 1280283 - R 100 -10.4 -4.73613 | opp_overlap 1280286 CTATTAGTAAGAAAA GAACACAGTT TTTC AACTGCGTTC TAAACACTATGATTT valS 1282961 - 1280313 - | valyl-tRNA synthetase TERM 1655 1280696 - 1280710 + g 73 -8.6 -3.72743 | CACTATCTGCTGTCT TCACCA AAA TGGTGA TTGGTTTTGATGGTG TERM 1656 1281739 - 1281722 - G 70 -8.5 -3.29096 | TGTACCAAGCAGGAA TTTGGTG CCCC CACCAAA GCTGACGCGAGATTA M28_Spy1297 1283547 - 1282963 - | hypothetical protein M28_Spy1298 1283702 - 1283523 - | ribosomal-protein-serine acetyltransferase TERM 1657 1283803 - 1283814 + r 71 -3 -5.1764 | GCCGTTCTGTTTCCA CTTT GGGC AAAG TTTTTCTATTGTATA TERM 1658 1283913 - 1283886 - R 100 -12.8 -4.17906 | opp_overlap 1283883 AATGAAACCAAATAA TCCCTATCCAGC TTAC ACTGGACAGGGA CGAATTTCGTGTTAC M28_Spy1299 1284523 - 1284128 - | putative cytoplasmic protein M28_Spy1300 1284882 - 1284544 - | hypothetical protein M28_Spy1301 1284983 - 1284867 - | hypothetical protein M28_Spy1302 1286109 - 1284967 - | transposase TERM 1659 1286376 - 1286399 + r 95 -9 -5.44638 | AGAAAATATACGAGT GAAACCTTAT TATA ATAGGGTTTC TTTTATTTTTGTTCT M28_Spy1303 1287573 - 1286437 - | DNA integration/recombination/invertion protein M28_Spy1304 1287955 - 1287623 - | hypothetical protein TERM 1660 1288120 - 1288101 - R 91 -4.3 -5.88476 | AAAACAAACAAAAAA GCCATGA AACTAA TCATGAC ATCAACGTTTCTCCA M28_Spy1305 1288664 - 1288122 - | hypothetical protein TERM 1661 1288852 - 1288889 + r 76 -2.8 -5.52347 | opp_overlap 1288856 1288857, overlap 1288855 1288857 1288861 TTCGCTCCTTTCAAC AAAACTAAAGCCATGA AATTAA TCATGGCTTTATCTTA TTTTTTACTTTTCTT TERM 1662 1288855 - 1288886 + r 70 -4.5 -4.78121 | opp_overlap 1288856 1288857, overlap 1288852 1288857 1288861 GCTCCTTTCAACAAA ACTAAAGCCATGA AATTAA TCATGGCTTTATC TTATTTTTTACTTTT TERM 1663 1288885 - 1288856 - R 84 -8 -4.63218 | opp_overlap 1288855 1288852 1288857 1288861, overlap 1288857 CTCCTTTCAACAAAA CTAAAGCCATGA AATTAA TCATGGCTTTAT CTTATTTTTTACTTT TERM 1664 1288857 - 1288884 + r 93 -11.5 -3.95231 | opp_overlap 1288856 1288857, overlap 1288855 1288852 1288861 TCCTTTCAACAAAAC TAAAGCCATGA AATTAA TCATGGCTTTA TCTTATTTTTTACTT TERM 1665 1288884 - 1288857 - R 89 -11.5 -3.3761 | opp_overlap 1288857 1288855 1288852 1288861, overlap 1288856 TCCTTTCAACAAAAC TAAAGCCATGA AATTAA TCATGGCTTTA TCTTATTTTTTACTT TERM 1666 1288861 - 1288880 + r 82 -7.9 -4.50902 | opp_overlap 1288857 1288856, overlap 1288857 1288855 1288852 TTCAACAAAACTAAA GCCATGA AATTAA TCATGGC TTTATCTTATTTTTT M28_Spy1306 1289648 - 1288887 - | putative cell surface protein M28_Spy1307 1290230 - 1289673 - | hypothetical protein M28_Spy1308 1291588 - 1290230 - | hypothetical protein TERM 1667 1291591 - 1291572 - G 100 -8.6 -5.89921 | ACTACAATAAAAAAA GGAATGCT CATA AGCACTCC TAGACATCCAAGTTT M28_Spy1309 1291723 - 1291866 + | hypothetical protein TERM 1668 1291942 - 1291965 + T 100 -9.6 -4.93333 | AAACGGTTCTGCATT GGGTAGTTGT TTCC GCAACTGCCC TTTTCTATTTTCATT M28_Spy1310 1294349 - 1292034 - | membrane protein TERM 1669 1292206 - 1292216 + g 74 -4 -5.12707 | TGACCTAATTCTGCT TCTA ATT TAGA TTTTTTCCGATTTCC TERM 1670 1292378 - 1292394 + g 78 -3.8 -5.20333 | opp_overlap 1292378 1292380 1292389, overlap 1292389 TATCAGAGGAATAAT TATTTC CAATA GAAATA TTTTTCTTCTGACTG TERM 1671 1294365 - 1294375 + r 74 -5.4 -4.7878 | TTGGCCTCTCCTTTC TACG AAG CGTA TTTATTTTCTAAGTG M28_Spy1311 1296865 - 1294364 - | DNA segregation ATPase related protein TERM 1672 1294394 - 1294410 + g 70 -8.1 -3.71672 | ATTTTCTAAGTGGCT TGAAACA GAC TGTTTCA TTGGTTTTAATAAGG TERM 1673 1296840 - 1296854 + g 70 -2.8 -5.07567 | opp_overlap 1296841, overlap 1296841 CTGTGAATGCTATTA ATTGGA TAT TCCAAC TTTTTTACCATCTGA M28_Spy1312 1297296 - 1296886 - | hypothetical protein TERM 1674 1297233 - 1297281 + g 75 -2.5 -5.30348 | gap 1, opp_overlap 1297250, overlap 1297235 1297246 1297250 CTTTTGACGTTTTTA TTTCTTGAATCCAGTAAGGGGC GTTTAG GCCCC-TACTGTAATCAAAATA TTTTTCTTCTTCCAT M28_Spy1313 1297568 - 1297299 - | hypothetical protein TERM 1675 1297363 - 1297347 - G 91 -10.9 -4.57073 | opp_overlap 1297346 1297347 CATCCCTCCTAAAAA GGCAAGA ATT TCTTGCC CTTTAAACAGAGAAA TERM 1676 1297347 - 1297363 + g 76 -10.9 -2.71712 | opp_overlap 1297347, overlap 1297346 CATCCCTCCTAAAAA GGCAAGA ATT TCTTGCC CTTTAAACAGAGAAA M28_Spy1314 1298537 - 1297587 - | hypothetical protein M28_Spy1315 1299017 - 1298538 - | hypothetical protein TERM 1677 1298916 - 1298885 - G 76 -7.4 -4.2928 | opp_overlap 1298886 1298892, overlap 1298886 1298892 CAGAAAAACCACAAA TGAAAAAGGCATCA TCCT TGATACCTCTTTCT ATCATGTGATCTCTT TERM 1678 1298915 - 1298886 - G 79 -10.9 -3.15941 | opp_overlap 1298886 1298892, overlap 1298885 1298892 AGAAAAACCACAAAT GAAAAAGGCATCA TCCT TGATACCTCTTTC TATCATGTGATCTCT TERM 1679 1298909 - 1298892 - G 83 -6.3 -5.05505 | opp_overlap 1298886 1298892, overlap 1298886 1298885 ACCACAAATGAAAAA GGCATCA TCCT TGATACC TCTTTCTATCATGTG M28_Spy1316 1299276 - 1299025 - | hypothetical protein M28_Spy1317 1299515 - 1299306 - | hypothetical protein TERM 1680 1299553 - 1299531 - R 90 -8.4 -5.26875 | opp_overlap 1299534, overlap 1299532 TCCTTAATTAAAAAA GGAGCAAGCC ATT GACTTGCTCT CATCCTTAATGAAAT TERM 1681 1299552 - 1299532 - R 91 -11.9 -3.75402 | opp_overlap 1299534, overlap 1299531 CCTTAATTAAAAAAG GAGCAAGCC ATT GACTTGCTC TCATCCTTAATGAAA M28_Spy1318 1299831 - 1299559 - | hypothetical protein TERM 1682 1299943 - 1299928 - R 89 -7.6 -5.24129 | TTCCCTCATAAAAAA GAACCT CTTA AGGTTC ATGAATCTAAAACTA M28_Spy1319 1300169 - 1300026 - | Cro/CI family transcriptional regulator M28_Spy1320 1300597 - 1300220 - | hypothetical protein M28_Spy1321 1301839 - 1300598 - | Cro/CI family transcriptional regulator TERM 1683 1301692 - 1301719 + g 87 -5 -5.4505 | overlap 1301690 1301695 AACCAAAATGTGTTT TCATTTCTTGAA ATTT TTCAAGAGATAA TTTTTTCTTACCAGA TERM 1684 1301992 - 1302012 + r 93 -9.7 -4.20696 | overlap 1302010 TTTTTCAAATCTTAC CCCCCTATT AGA AATCGGGGG TTTTAAAATTGATAA M28_Spy1322 1303860 - 1302151 - | FtsK/SpoIIIE family protein TERM 1685 1303828 - 1303794 - G 90 -3.9 -5.8901 | gap 2, opp_overlap 1303794 1303803 1303804 ATAGAAAAGAAAAAA GGTAATAACTCATATAC CTC ATATATG-GTT-TTACC TTAATCCCTCTATAT M28_Spy1323 1304335 - 1303880 - | hypothetical protein M28_Spy1324 1304643 - 1304338 - | hypothetical protein TERM 1686 1304442 - 1304428 - G 70 -2.8 -5.03314 | TCTATCTTCAAAAAA GATAGC TTC ACCATC AATTTCAACTACATC M28_Spy1325 1308963 - 1304905 - | putative cell surface protein TERM 1687 1309057 - 1309038 - R 85 -6.4 -5.3104 | TTACTAAAAAGAAAA GGAAGGTA ATCT TGCCTTCC AATTAAAAACTATTT TERM 1688 1309114 - 1309095 - R 88 -7.2 -4.87893 | opp_overlap 1309089 1309095 AACTCCAATCAAAAA GCCATTCT CTAA AGAATGAC CTCTTGTTCTATATT M28_Spy1326 1311373 - 1309133 - | putative cell surface protein M28_Spy1327 1311858 - 1311466 - | hypothetical protein TERM 1689 1311981 - 1311959 - R 93 -7.8 -5.61913 | opp_overlap 1311959 AACAAATATAAAAAA GCTATGAC ACATAAA GTCATAGC TTACTGACTAAATAC M28_Spy1328 1312422 - 1311982 - | hypothetical protein M28_Spy1329 1313014 - 1312580 - | Cro/CI family transcriptional regulator TERM 1690 1313190 - 1313168 - H 100 -9.2 -5.4505 | TTTTTTAACAAAAAA GTCGACTTAT GAA AGAAGTCGAC ATAGAAAAAAATATT TERM 1691 1313700 - 1313740 + H 84 -6.1 -5.39681 | TCTATGTTTTATTAT GTGTGTTATTCAACTTAGC TTA GCTGTGTTGTCTGACGCAC TTTTTATTTAATTAT M28_Spy1330 1313889 - 1314275 + | Cro/CI family transcriptional regulator M28_Spy1331 1314282 - 1314704 + | hypothetical protein TERM 1692 1314695 - 1314721 + T 73 -3.7 -5.18726 | opp_overlap 1314696, overlap 1314696 AAGAAATCACAGAAA AGAGAGCTAGT AGTTA GTTAGCTCTCC TTTTTATTCTGAAAA TERM 1693 1314720 - 1314696 - T 77 -5.8 -4.65584 | opp_overlap 1314695 1314696 AGAAATCACAGAAAA GAGAGCTA GTAGTTAGT TAGCTCTC CTTTTTATTCTGAAA M28_Spy1332 1315125 - 1314769 - | hypothetical protein M28_Spy1333 1315466 - 1315128 - | hypothetical protein M28_Spy1334 1315756 - 1315463 - | hypothetical protein TERM 1694 1315838 - 1315824 - g 83 -3.6 -5.67283 | AACGCAAACAAAAAA GAAAAT CGT ATTTCC CAGTGAAGAGACCCT M28_Spy1335 1315777 - 1315962 + | transposase TERM 1695 1316161 - 1316132 - T 88 -7.9 -4.84642 | opp_overlap 1316136, overlap 1316134 TTTAAATCAACAAAA GAGAGCCTAGGAT TAAC ATCTTAGGCTCTA ATGATACACTTCATT TERM 1696 1316159 - 1316134 - T 93 -10.5 -4.03104 | opp_overlap 1316136, overlap 1316132 TAAATCAACAAAAGA GAGCCTAGGAT TAAC ATCTTAGGCTC TAATGATACACTTCA TERM 1697 1316136 - 1316157 + T 73 -9.5 -2.83012 | opp_overlap 1316134 1316132 AATCAACAAAAGAGA GCCTAGGAT TAAC ATCTTAGGC TCTAATGATACACTT TERM 1698 1316344 - 1316306 - T 100 -15.6 -3.315 | opp_overlap 1316311, overlap 1316311 ACGCTTACACAAAAT CAAAAGCCTATCGAAATT AAT AATCTCGATAGGCTTTTT CAAGAATTAAACTCG TERM 1699 1316311 - 1316339 + T 100 -13.3 -4.59853 | opp_overlap 1316306 1316311 TACACAAAATCAAAA GCCTATCGAAATT AAT AATCTCGATAGGC TTTTTCAAGAATTAA TERM 1700 1316339 - 1316311 - T 100 -15.5 -4.75518 | opp_overlap 1316311, overlap 1316306 TACACAAAATCAAAA GCCTATCGAAATT AAT AATCTCGATAGGC TTTTTCAAGAATTAA M28_Spy1336 1320961 - 1316468 - | R28 protein TERM 1701 1320972 - 1321001 + H 72 -8.1 -3.36492 | AACATAATATTCTCC TTTACTCTGTATA ACTC TATACAGATTAAA TTATAGGCTTAAACA TERM 1702 1322365 - 1322346 - g 93 -7.9 -5.50499 | GGACATTTAAAAAAA TAGTGGG AATTAG CCCACTA GAATATAAGCAAAAG M28_Spy1337 1321190 - 1322395 + | AraC family transcriptional regulator TERM 1703 1322684 - 1322711 + F 93 -7.1 -5.64274 | opp_overlap 1322684 GGCATCTATAAAAAA TACTGTCCTAA TAAGAT TTGGGGCAGTA TTTTTTTATAGCTAG TERM 1704 1322711 - 1322684 - f 72 -2.7 -5.28176 | opp_overlap 1322684 GGCATCTATAAAAAA TACTGTCCTAA TAAGAT TTGGGGCAGTA TTTTTTTATAGCTAG TERM 1705 1322948 - 1322962 + G 70 -3.6 -4.89477 | CTTTCAAAATAAGAC TTGTTC TAA GAATAA TTTTATTGTTGGACC M28_Spy1338 1322913 - 1323665 + | 3-deoxy-7-phosphoheptulonate synthase TERM 1706 1324766 - 1324784 + G 90 -9.6 -4.33819 | opp_overlap 1324765 1324766, overlap 1324767 AAGACGATCACCAAT TTGTCGAG AAG CTCGACAG TTTATTATAAATAGT TERM 1707 1324767 - 1324783 + G 79 -10.9 -3.19568 | opp_overlap 1324766 1324765, overlap 1324766 AGACGATCACCAATT TGTCGAG AAG CTCGACA GTTTATTATAAATAG aroB 1323706 - 1324794 + | 3-dehydroquinate synthase TERM 1708 1325017 - 1325058 + T 88 -7.4 -5.18357 | opp_overlap 1325017 1325016, overlap 1325050 ATTTCGTCTAAAAAG CCTTAATGAGAAACCTAT AAGGAG ATAGGAAACTCATTAAGG TTTTTTAGTGAATTC M28_Spy1340 1325221 - 1325063 - | hypothetical protein TERM 1709 1325157 - 1325189 + g 93 -13.7 -3.10597 | opp_overlap 1325162, overlap 1325162 TCGCTTTGAATACGT AAAAAGAGAAGATGA GCG TCATCTTCTCTTTTG CTTTTCCATAGGCCA TERM 1710 1325184 - 1325162 - G 100 -13.6 -4.74706 | opp_overlap 1325157 1325162 TTGAATACGTAAAAA GAGAAGATGA GCG TCATCTTCTC TTTTGCTTTTCCATA TERM 1711 1325162 - 1325184 + g 100 -13.6 -4.68645 | opp_overlap 1325162, overlap 1325157 TTGAATACGTAAAAA GAGAAGATGA GCG TCATCTTCTC TTTTGCTTTTCCATA M28_Spy1341 1325534 - 1325229 - | putative cytoplasmic protein M28_Spy1342 1325874 - 1325536 - | putative cytoplasmic protein M28_Spy1343 1326682 - 1325927 - | SAM-dependent methyltransferase aroE 1327812 - 1326934 - | shikimate 5-dehydrogenase lacZ 1331456 - 1327950 - | beta-galactosidase TERM 1712 1329530 - 1329520 - GR 72 -8.2 -3.41051 | GCATTTTTAGGAGAA GGCC AAA GGCC TACAACACCGCTGTC M28_Spy1346 1332870 - 1331386 - | two-component response regulator M28_Spy1347 1334597 - 1332870 - | two-component sensor kinase TERM 1713 1333759 - 1333748 - G 76 -4.4 -5.03994 | overlap 1333742 GGCCATACACAAAAA CTGT CCTG ACAG CTTCCGCTAATAAAT M28_Spy1348 1335189 - 1334584 - | hypothetical protein TERM 1714 1335466 - 1335447 - R 83 -7.8 -4.81212 | CTCATCAGAAGAAAA GAGCTGAG ATTT CCCAGCCC TCAACTTATAATCAA M28_Spy1349 1336940 - 1335495 - | sugar-binding protein TERM 1715 1337010 - 1336993 - R 71 -5.5 -4.59027 | opp_overlap 1336981 1336994, overlap 1336994 AATGATTAGATAAAA TCTGGTC TTGT GACCAGT TCCTTAAGTCCTATT TERM 1716 1337009 - 1336994 - R 75 -9 -3.34332 | opp_overlap 1336981 1336994, overlap 1336993 ATGATTAGATAAAAT CTGGTC TTGT GACCAG TTCCTTAAGTCCTAT TERM 1717 1336994 - 1337009 + r 75 -9 -3.38584 | opp_overlap 1336993 1336994, overlap 1336981 ATGATTAGATAAAAT CTGGTC TTGT GACCAG TTCCTTAAGTCCTAT M28_Spy1350 1337947 - 1337021 - | sugar transport system permease protein M28_Spy1351 1338955 - 1337957 - | sugar transport system permease protein M28_Spy1352 1339058 - 1339981 + | glucokinase M28_Spy1353 1340124 - 1340246 + | hypothetical protein TERM 1718 1340471 - 1340435 - T 78 -10.3 -2.71094 | AAGATGGATAGATGA TGCCAAACCAGACAGAA CGC TTATATCTAGTTCGGCA AATACCAACACCTTC TERM 1719 1340539 - 1340495 - T 78 -7.1 -4.42062 | opp_overlap 1340497, overlap 1340497 CACCTTCCAAAGAAA TACAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTGTT TAATCATTGGTAACA TERM 1720 1340537 - 1340497 - T 83 -9.7 -3.81557 | opp_overlap 1340497, overlap 1340495 CCTTCCAAAGAAATA CAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTG TTTAATCATTGGTAA M28_Spy1354 1342034 - 1340592 - | beta-glucosidase hyl 1343753 - 1342059 - | hyaluronoglucosaminidase TERM 1721 1343167 - 1343181 + g 70 -8.6 -3.38522 | overlap 1343166 ATCCCTTCTTCCTTG GCTACT GCA AGTAGC TCTTTGAAATAAGTC M28_Spy1356 1344844 - 1343804 - | GntR family transcriptional regulator M28_Spy1357 1344950 - 1346263 + | hypothetical protein TERM 1722 1347452 - 1347427 - g 82 -8.3 -4.26327 | gap 1, overlap 1347424 1347428 TATTTAGCAAAAGAA GCTGC-CCAGCA AAT TGCTGGCGCAGT TAACACGAGTGACTT TERM 1723 1347451 - 1347428 - g 83 -11.8 -3.15073 | gap 1, overlap 1347427 1347424 ATTTAGCAAAAGAAG CTGC-CCAGCA AAT TGCTGGCGCAG TTAACACGAGTGACT M28_Spy1358 1346278 - 1348983 + | alpha-mannosidase TERM 1724 1349021 - 1349046 + T 95 -14.1 -3.28783 | opp_overlap 1349021, overlap 1349014 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA TERM 1725 1349046 - 1349021 - T 100 -11.9 -4.74453 | opp_overlap 1349014 1349021 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA rocA 1350439 - 1349084 - | sensory transduction protein kinase TERM 1726 1349452 - 1349462 + g 74 -4 -5.10497 | TCGATACCTCAACCT TAAG CTT CTTA TTTTTTGCCTCAATT TERM 1727 1350831 - 1350842 + r 70 -4.4 -4.64846 | TGGTAATGTAACCTC CTGA CCAC TCAG TTTTCTAATTTATAG M28_Spy1360 1352459 - 1351104 - | tRNA (uracil-5-)-methyltransferase TERM 1728 1351403 - 1351425 + g 100 -12.8 -5.65177 | CCTCATAGTAAGCGT TGTCAAAGCC CAT GGCTTTGGCA TTTTTTTGTGCATCT recX 1352574 - 1353350 + | recombination regulator RecX M28_Spy1362 1353430 - 1353963 + | hypothetical protein M28_Spy1363 1354211 - 1354062 - | hypothetical protein TERM 1729 1354141 - 1354114 - G 90 -11.4 -4.07568 | opp_overlap 1354110 1354108 1354107 TTCGTTGTGGTAAAA GTGGCGTCAA TGTTAATG TTGACGCCAC TTGGCATTTTTGAGC TERM 1730 1354206 - 1354172 - G 71 -5 -4.63527 | CTAGGATCTCAAAAA TAAGGCATGGAATTCC AAA GAAAGTCGCTGCCTTA AGCACTACCTAAGGA TERM 1731 1354248 - 1354235 - H 76 -3.9 -5.243 | GAAAGTATCAAAAAA TACTA AGTT TAGTA GCGAGGAAATCTCCG TERM 1732 1354474 - 1354464 - g 75 -5.4 -4.68724 | TCATTCAAGACAAAA CGAT ACC ATCG GCCTCAATCATCTTC M28_Spy1364 1354333 - 1354611 + | transposase TERM 1733 1354946 - 1354975 + F 100 -13.9 -4.98255 | opp_overlap 1354946 AAGAAACAATAAAAA GCTTAAATTTGTT GTAT AACAAATTTAAGC TTTTTATCATTAAAA TERM 1734 1354975 - 1354946 - f 100 -13.9 -5.44198 | opp_overlap 1354946 AAGAAACAATAAAAA GCTTAAATTTGTT GTAT AACAAATTTAAGC TTTTTATCATTAAAA TERM 1735 1357824 - 1357857 + F 71 -8.9 -3.03412 | overlap 1357818 1357823 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 1736 1358516 - 1358535 + F 91 -12.2 -3.62096 | opp_overlap 1358515 1358514 CGCAGTCCTACAACC CCGAAGTG TAAA CACTTCGG TTTGCCCTCCTGCCG TERM 1737 1360801 - 1360815 + F 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC M28_Spy1365 1360866 - 1361090 + | hypothetical protein TERM 1738 1361308 - 1361321 + T 76 -3.9 -5.35815 | GCTATTATTTTTAGT TAGAA AAAA TTCTA TTTTTATTTGGTGTC TERM 1739 1361454 - 1361431 - T 95 -4.6 -6.20267 | opp_overlap 1361431 1361445 GGAAAAAGAAAAAAA CGCGCTTT ATATTCTG AAAACGCG CTTTTTCATATTTTT M28_Spy1366 1362232 - 1361684 - | ribosome-associated factor Y TERM 1740 1362249 - 1362261 + r 81 -9.1 -3.72621 | GGATACCTCTTTCTC GCGCT TGA AGCGC TTACTTTATCTTTAA comFC 1362977 - 1362312 - | ComF operon protein 3 TERM 1741 1362555 - 1362536 - GR 77 -6.4 -4.55887 | TTTCAAAAAGAGAAA GGTAGCTA ACAT TAGCTGCC TCAAGAATAGCGCTC comFA 1364274 - 1362949 - | ComF operon protein 1 TERM 1742 1363914 - 1363931 + gH 76 -2 -5.46698 | TTCCTGCACCAGTTA CAGCAT GAACTA ATGTTG TTTTTTGATTTTGCA M28_Spy1369 1364315 - 1364962 + | Xaa-Pro dipeptidase TERM 1743 1364979 - 1365013 + F 71 -5.2 -4.59376 | overlap 1364983 1364985 CATCAACAAAAGTGA TATGGCTTTATTATCA GAG TGATAGTAAATCTGTA TTTTACTTTAATAAT cysM 1365090 - 1366031 + | cysteine synthase TERM 1744 1366025 - 1366076 + T 88 -6.9 -5.02074 | gap 1, opp_overlap 1366036 1366038, overlap 1366036 GCCAGTAATTAAGAC GAA-ATAAAAAAGGGTTTGGAACT ACTAA GGTTCCAGACTCTTTTTAGTGTTC TTTTTTAAAAACTGC TERM 1745 1366036 - 1366064 + T 90 -8.2 -4.94672 | opp_overlap 1366036 1366038, overlap 1366025 AGACGAAATAAAAAA GGGTTTGGAACT ACTAA GGTTCCAGACTC TTTTTAGTGTTCTTT TERM 1746 1366064 - 1366036 - T 82 -3.1 -5.69793 | opp_overlap 1366036 1366025, overlap 1366038 AGACGAAATAAAAAA GGGTTTGGAAC TACTAAG GTTCCAGACTC TTTTTAGTGTTCTTT M28_Spy1371 1366426 - 1366049 - | hypothetical protein M28_Spy1372 1367838 - 1366426 - | peptidyl-prolyl cis-trans isomerase yvqC 1368510 - 1367863 - | two-component response regulator TERM 1747 1368371 - 1368351 - G 71 -4.8 -4.50058 | gap 1, overlap 1368345 1368354 GATCCATAACCAAAA CATCTGGCT TCAA AGCCA-ATG CCAAATCAACCCCTT yvqE 1369501 - 1368497 - | two-component sensor protein yvqF 1370241 - 1369498 - | transporter TERM 1748 1370266 - 1370308 + r 78 -7.9 -4.21351 | opp_overlap 1370266, overlap 1370269 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCT AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT TERM 1749 1370308 - 1370266 - R 100 -10.1 -4.68994 | opp_overlap 1370266 1370269 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCT AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT M28_Spy1376 1372211 - 1370313 - | serine/threonine protein kinase pppL 1372948 - 1372208 - | protein phosphatase 2C TERM 1750 1372742 - 1372764 + g 71 -4.8 -4.63542 | overlap 1372744 TAACCAATCTCTAAT CTGACTTAAC TCT GTGAAGTCTG TTTTTACCCATTCTC TERM 1751 1372958 - 1372970 + r 73 -7.7 -3.79251 | CTTCATACGTTTTTT CTGAC TCA GTCAG TTTCCTCCTAAAATA sunL 1374344 - 1372986 - | 16S rRNA m(5)C 967 methyltransferase TERM 1752 1373380 - 1373390 + gr 70 -3.2 -4.84914 | TGACGATGAACCTCT CTGG CAT CTAG TTTTCTTGTCTCAAT fmt 1375233 - 1374298 - | methionyl-tRNA formyltransferase priA 1377706 - 1375295 - | primosome assembly protein PriA TERM 1753 1377748 - 1377726 - R 95 -8.6 -5.32699 | opp_overlap 1377726 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT TERM 1754 1377726 - 1377748 + r 87 -6.4 -5.4111 | opp_overlap 1377726 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT M28_Spy1381 1378061 - 1377744 - | DNA-directed RNA polymerase subunit omega gmk 1378712 - 1378077 - | guanylate kinase TERM 1755 1378375 - 1378352 - G 93 -6.8 -5.40072 | overlap 1378358 GTGGTGTTAAAAAAA CAAAAACACC ATCT GGTACTTTTG ACTTAACCTGAAGAG TERM 1756 1378369 - 1378358 - G 84 -2.2 -5.86609 | overlap 1378352 TTAAAAAAACAAAAA CACC ATCT GGTA CTTTTGACTTAACCT TERM 1757 1378797 - 1378822 + r 89 -13.5 -2.74012 | opp_overlap 1378797 1378803, overlap 1378803 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1758 1378822 - 1378797 - R 100 -13.5 -3.98484 | opp_overlap 1378797 1378803, overlap 1378803 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1759 1378816 - 1378803 - R 85 -6.7 -5.38958 | opp_overlap 1378803 1378797, overlap 1378797 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA TERM 1760 1378803 - 1378816 + r 83 -6.7 -4.98255 | opp_overlap 1378797 1378803, overlap 1378797 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA M28_Spy1383 1380429 - 1378822 - | hypothetical protein TERM 1761 1379939 - 1379961 + g 78 -2.8 -5.36965 | gap 1 TCTGCAATCGTCATC GCAGCAACT TTTTCC AGTT-CTGC TTTTTTCTCCTCTTC TERM 1762 1380585 - 1380572 - R 74 -2.4 -5.47218 | CCCTACTTAAAAAAA GACT GTAGCA AGTC GTCCATGATGTAGGC M28_Spy1384 1381479 - 1380559 - | LysR family transcriptional regulator TERM 1763 1381570 - 1381557 - H 86 -2.5 -5.86061 | opp_overlap 1381568 CTCTATCAAAAAAAA TTATA TGCT TATAA AAATTCTATATTTTT atoB 1381656 - 1382843 + | acetyl-CoA acetyltransferase TERM 1764 1383184 - 1383195 + G 73 -7.2 -4.13767 | ATTAGCTGAGCGCAT CCGC AGTG GCGG TTTTGGGCTAGGCGG atoD.1 1382855 - 1383517 + | acetate CoA-transferase alpha subunit atoA 1383519 - 1384178 + | acetate CoA-transferase beta subunit TERM 1765 1384832 - 1384815 - g 75 -7.7 -4.09511 | overlap 1384818 AAGACCTTTCCAAAA CAAGAGG TATT CCCCTTG AAAATGTTCTTGAAG M28_Spy1388 1384211 - 1384990 + | 3-hydroxybutyrate dehydrogenase M28_Spy1389 1385061 - 1386392 + | D-beta-hydroxybutyrate permease luxS 1386376 - 1386948 + | S-ribosylhomocysteinase TERM 1766 1387078 - 1387055 - T 100 -10.4 -5.30155 | opp_overlap 1387055 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTTGATTTTC TERM 1767 1387055 - 1387078 + T 100 -8.2 -6.07969 | opp_overlap 1387055 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTTGATTTTC M28_Spy1391 1388563 - 1387094 - | hypothetical protein M28_Spy1392 1389731 - 1388577 - | methyltransferase TERM 1768 1389775 - 1389760 - R 95 -9 -5.04868 | TTAAATCAAATAAAA GCTAGC AAGT GCTAGC TTAACCTATTATGCA M28_Spy1393 1390502 - 1390176 - | cell division initiation protein DivIVA M28_Spy1394 1391139 - 1390624 - | hypothetical protein TERM 1769 1390760 - 1390746 - G 75 -2.8 -5.24129 | opp_overlap 1390746 CTGTGTCATAAAAAA CATAAG CCC CTTCTG TCTTTTCTAATAAAA TERM 1770 1391475 - 1391443 - g 82 -7.8 -4.57569 | GCAGTCGGGCAAAAA TCGTTGAAGCGTAC TTTAG ACAAGCTTCAACGA CTGACTATTGCGGCG recU 1391220 - 1391828 + | Holliday junction-specific endonuclease pbp1A 1391815 - 1393980 + | multimodular transpeptidase-transglycosylase TERM 1771 1394100 - 1394074 - T 76 -3.6 -5.33026 | opp_overlap 1394075, overlap 1394075 TAATCTAAATAAAAA GCGAGTCCAC GTTCTGT GAGGACTCGT TTTTATATGACACAA TERM 1772 1394099 - 1394075 - T 70 -7.1 -3.78189 | opp_overlap 1394075, overlap 1394074 AATCTAAATAAAAAG CGAGTCCAC GTTCTGT GAGGACTCG TTTTTATATGACACA TERM 1773 1394075 - 1394099 + T 95 -8.5 -4.96848 | opp_overlap 1394075 1394074 AATCTAAATAAAAAG CGAGTCCACGT TCT GTGAGGACTCG TTTTTATATGACACA TERM 1774 1394173 - 1394153 - T 89 -8.5 -4.29034 | AAACAAAAAACAGAA TTCTTTAAT CGT ATTAAAGAA AAGGTACAACGTTAA TERM 1775 1394294 - 1394318 + T 70 -2.1 -5.24989 | opp_overlap 1394279 1394280 1394294, overlap 1394282 1394280 GTAAACATGAAAAAA CACGTTTCC ATATACC GAAGACGTG TTTTTTCATATGTCA TERM 1776 1394318 - 1394294 - T 72 -2.8 -5.32699 | opp_overlap 1394294 1394282 1394280, overlap 1394279 1394280 GTAAACATGAAAAAA CACGTTTCCA TATAC CGAAGACGTG TTTTTTCATATGTCA TERM 1777 1394458 - 1394444 - T 70 -7.2 -3.75884 | TCGCAAAGAAAGGAA TTAGCA TTG TGCTAA AGCACCCATTGGATC pepC 1395781 - 1394444 - | aminopeptidase C TERM 1778 1395903 - 1395934 + r 93 -8.2 -5.57888 | opp_overlap 1395911, overlap 1395911 ATTTGATTTTCTTCA AGAAAAAAGTTAGG ATAA CCTAACTTTTTTTG TTTTCTTTTTTTACT TERM 1779 1395911 - 1395926 + r 100 -7.6 -6.17669 | opp_overlap 1395911, overlap 1395903 TTCTTCAAGAAAAAA GTTAGG ATAA CCTAAC TTTTTTTGTTTTCTT TERM 1780 1395926 - 1395911 - R 93 -7.6 -5.4505 | opp_overlap 1395911 1395903 TTCTTCAAGAAAAAA GTTAGG ATAA CCTAAC TTTTTTTGTTTTCTT nadE 1396832 - 1395966 - | NAD synthetase TERM 1781 1396190 - 1396180 - GR 71 -6.8 -4.03413 | ACTTTTTCATACAAA GCAG CAT CTGC TCCTAAAACTTTCAA nadE 1398246 - 1396792 - | nicotinate phosphoribosyltransferase TERM 1782 1397284 - 1397304 + gr 81 -9.1 -3.72576 | AGCACCTAAGGCAGG CTGATCATA GGC TGTGATCAG TTTGGTCCCAACACC M28_Spy1400 1399808 - 1398417 - | amino acid permease M28_Spy1401 1400882 - 1399965 - | thioredoxin reductase aapA 1401170 - 1400946 - | hypothetical protein TERM 1783 1401259 - 1401217 - R 70 -3.7 -5.00884 | gap 1, overlap 1401230 AGTTTTTCTAAAAAA CATAACAAGAAAAGCCCAGG AATA CCTAGACCTTT-TTATTATA ACAAAAGAATATCAT TERM 1784 1401247 - 1401230 - R 77 -5.5 -4.99312 | overlap 1401217 AACATAACAAGAAAA GCCCAGG AATA CCTAGAC CTTTTTATTATAACA M28_Spy1403 1402020 - 1401274 - | transporter M28_Spy1404 1402910 - 1402017 - | amino acid ABC transporter permease protein M28_Spy1406 1404358 - 1403015 - | ATP-dependent RNA helicase TERM 1785 1403836 - 1403815 - GH 83 -10.3 -3.21593 | overlap 1403813 TAGTTGCTGAGAACA CCAAAATCT GAAC AGATTTTGG AAGCGAAGCTGCAAT M28_Spy1405 1404357 - 1404506 + | hypothetical protein mraY 1405526 - 1404516 - | phospho-N-acetylmuramoyl-pentapeptide-transferase M28_Spy1408 1407783 - 1405528 - | cell division protein ftsI TERM 1786 1406684 - 1406702 + g 73 -7.4 -4.10672 | opp_overlap 1406684, overlap 1406677 TCTGCAATTGTTAAA CCATTAGC ATT GCTAAAGG TTTCGTTTGGGTTGA ftsL 1408140 - 1407787 - | cell division protein TERM 1787 1408032 - 1408052 + gr 75 -2.5 -5.30199 | opp_overlap 1408032, overlap 1408034 TAGCAGTATAAAAAG CCTTCTCAA TTC TAGAGAAAG TTTTTATTCGTTTTT mraW 1409128 - 1408115 - | S-adenosyl-methyltransferase MraW TERM 1788 1408552 - 1408576 + gr 71 -6.5 -4.19624 | overlap 1408570 CTCTTGCTTGTTCAA TTTTTCGAGCA ATC TGCTTGGAGAA TTTATCTTCACCATA TERM 1789 1408973 - 1408950 - GR 89 -8.8 -4.27512 | overlap 1408947 TTGGACAACAAATAA GCTGAGTGGC CTGA GCCACCTAGC GTCGCATCAACATAA M28_Spy1411 1409316 - 1409152 - | hypothetical protein M28_Spy1412 1409625 - 1409359 - | hypothetical protein TERM 1790 1409543 - 1409553 + gr 70 -5.4 -4.37863 | opp_overlap 1409543, overlap 1409540 AAAAGTTCTTCTAAA GCAA CCT TTGC TTCTTCTTTTTCTCT proA 1410850 - 1409600 - | gamma-glutamyl phosphate reductase M28_Spy1414 1411670 - 1410843 - | gamma-glutamyl kinase TERM 1791 1411701 - 1411686 - R 83 -6.8 -4.95758 | opp_overlap 1411686, overlap 1411680 ATTATAGCATAAAAA CAGCCC CAGA GGACTG TTTTTCCGAATAATG proB 1413398 - 1411728 - | ABC transporter permease protein TERM 1792 1413192 - 1413182 - GR 76 -3.2 -5.28414 | CAATAAACATAAAAA GGTA AAT CACC AAAAACATGGCAATC M28_Spy1416 1414095 - 1413361 - | ABC transporter ATP-binding protein M28_Spy1417 1414395 - 1414129 - | hypothetical protein TERM 1793 1414547 - 1414572 + r 100 -13.5 -3.65425 | opp_overlap 1414547 TTTATTTTAAAAAAA CAGAGTAAATC ATTT GATTTACTCTG TTTGGGATGTGTAAC TERM 1794 1414572 - 1414547 - R 100 -13.5 -5.44119 | opp_overlap 1414547 TTTATTTTAAAAAAA CAGAGTAAATC ATTT GATTTACTCTG TTTGGGATGTGTAAC tkt 1416573 - 1414588 - | transketolase M28_Spy1419 1417435 - 1416791 - | putative translaldolase TERM 1795 1417339 - 1417323 - G 71 -6.6 -4.10007 | ATAACTGTTTCAAAA TCACGT CCTTC ACGTGA GATAATGGTTGGATT M28_Spy1420 1419120 - 1417561 - | trans-acting positive regulator TERM 1796 1417761 - 1417735 - GR 79 -9.5 -3.34398 | overlap 1417733 TTGTCTCGGTAAATA GACAGTCTGAT AGGTA ATCAGACAGTC ATAAACTTTTTGATG M28_Spy1421 1420489 - 1419050 - | NADH peroxidase TERM 1797 1419675 - 1419661 - GR 73 -8.6 -3.27525 | overlap 1419673 TTGGCCTAAAGTTAA TGGCTA AAA TAGCCA AATCACCTTGGAAGG TERM 1798 1420498 - 1420463 - GR 87 -4.8 -5.38054 | gap 1, opp_overlap 1420468, overlap 1420464 1420468 TCCTATAAAGAAAAA GCAAAGGAGCTGGCCTA TGA TA-GCCAACCCCTTTAG TGATGGTTAGGACAT TERM 1799 1420497 - 1420464 - GR 77 -8.3 -3.81748 | gap 1, opp_overlap 1420468, overlap 1420463 1420468 CCTATAAAGAAAAAG CAAAGGAGCTGGCCTA TGA TA-GCCAACCCCTTTA GTGATGGTTAGGACA TERM 1800 1420493 - 1420468 - GR 80 -6.9 -4.46652 | gap 1, opp_overlap 1420468, overlap 1420464 1420463 TAAAGAAAAAGCAAA GGAGCTGGCCTA TGA TA-GCCAACCCC TTTAGTGATGGTTAG glpF 1421206 - 1420505 - | glycerol uptake facilitator protein glpO 1423046 - 1421208 - | alpha-glycerophosphate oxidase TERM 1801 1421261 - 1421273 + g 73 -7.7 -3.80174 | overlap 1421264 TGTCTGCAATCACGC GACGA AGA TCGTC TTCTTGTGCCACTCT glpK 1424588 - 1423062 - | glycerol kinase TERM 1802 1423681 - 1423670 - G 70 -3 -5.06816 | overlap 1423674 AGCCTGCAATAAAAA TAGA GCCT TCTA AAGCATAGTGAACCT TERM 1803 1424838 - 1424797 - R 100 -13.2 -4.81644 | opp_overlap 1424807 CAAAGAAAATCAAAA GACCCAACAATCACTCTG CTAATC CAGAGTCATCATTGGGTC ATAAAGAGAACTAAG M28_Spy1425 1425400 - 1424948 - | hypothetical protein TERM 1804 1425436 - 1425466 + r 86 -10.6 -3.6943 | opp_overlap 1425438 1425444, overlap 1425438 1425444 ACAGTCATCACGATA AACAAAAAGCAGTT CAG AGCTGCTTTTTGTC TTATGATTTTGGGTC TERM 1805 1425464 - 1425438 - R 93 -11 -3.99592 | opp_overlap 1425438 1425436 1425444, overlap 1425444 AGTCATCACGATAAA CAAAAAGCAGTT CAG AGCTGCTTTTTG TCTTATGATTTTGGG TERM 1806 1425438 - 1425464 + r 93 -13.2 -3.41757 | opp_overlap 1425438 1425444, overlap 1425436 1425444 AGTCATCACGATAAA CAAAAAGCAGTT CAG AGCTGCTTTTTG TCTTATGATTTTGGG TERM 1807 1425444 - 1425458 + r 84 -6.4 -5.16133 | opp_overlap 1425438 1425444, overlap 1425438 1425436 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTGTCTTATGAT TERM 1808 1425458 - 1425444 - R 82 -4.2 -5.40464 | opp_overlap 1425444 1425438 1425436, overlap 1425438 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTGTCTTATGAT M28_Spy1426 1425724 - 1425467 - | hypothetical protein glyS 1427917 - 1425878 - | glycyl-tRNA synthetase subunit beta TERM 1809 1426634 - 1426652 + g 72 -9.6 -3.02511 | GTAGTGTTCACGGAT TGCTGTTG CCA CAGCAGCA TCTTCACCAGCTAGA TERM 1810 1428111 - 1428085 - R 82 -9.6 -3.6502 | opp_overlap 1428091, overlap 1428086 1428091 TAGGGGGGACGCAAA GTGAAATTATCC AGT GGATAATTTCAG AAAACAAAAGTGTTC TERM 1811 1428110 - 1428086 - R 87 -13.1 -2.78798 | opp_overlap 1428091, overlap 1428085 1428091 AGGGGGGACGCAAAG TGAAATTATCC AGT GGATAATTTCA GAAAACAAAAGTGTT TERM 1812 1428105 - 1428091 - R 70 -7.2 -3.85909 | opp_overlap 1428091, overlap 1428086 1428085 GGACGCAAAGTGAAA TTATCC AGT GGATAA TTTCAGAAAACAAAA TERM 1813 1428217 - 1428239 + r 73 -7.6 -3.74762 | overlap 1428218 CGGGAGTAACCTTGA CTCGGCGACC TTC GGTCGCCCAC TTCTTGCTCGCTCTT TERM 1814 1428218 - 1428238 + r 81 -11.1 -2.84134 | overlap 1428217 GGGAGTAACCTTGAC TCGGCGACC TTC GGTCGCCCA CTTCTTGCTCGCTCT glyQ 1429212 - 1428295 - | glycyl-tRNA synthetase subunit alpha TERM 1815 1429376 - 1429327 - R 100 -17.3 -5.1675 | CTAGGCACCAAAAAA CCGCATTTTGATGCTCCTAAATC ATAA GACCTAGGGGCGTCAAAACGCGG TTCCACCCTAATTTA M28_Spy1429 1430117 - 1429584 - | hypothetical protein TERM 1816 1430029 - 1430039 + g 72 -3.2 -5.10877 | overlap 1430018 TCCTGTCCTCCTTGG GCTA ATA TGGC TTTTTCATTTGTTAT TERM 1817 1430214 - 1430237 + r 71 -6.8 -4.10331 | opp_overlap 1430214 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTAGTTCCTTAA TERM 1818 1430237 - 1430214 - R 83 -6.8 -5.00884 | opp_overlap 1430214 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTAGTTCCTTAA M28_Spy1430 1431091 - 1430249 - | aldo/keto reductase nagA 1432358 - 1431210 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1819 1432439 - 1432470 + r 100 -9.6 -5.03715 | opp_overlap 1432423 1432441 1432446, overlap 1432441 1432446 TTTTTGGATTCAAAA AAGAAAACGTGGAT GATC ATTCACGTTTTCTC TTTTTTAAAGCTGGT TERM 1820 1432468 - 1432441 - R 100 -10 -5.08824 | opp_overlap 1432439 1432441 1432446, overlap 1432446 TTTGGATTCAAAAAA GAAAACGTGGAT GATC ATTCACGTTTTC TCTTTTTTAAAGCTG TERM 1821 1432441 - 1432468 + r 100 -12.2 -4.14633 | opp_overlap 1432441 1432446, overlap 1432439 1432446 TTTGGATTCAAAAAA GAAAACGTGGAT GATC ATTCACGTTTTC TCTTTTTTAAAGCTG TERM 1822 1432463 - 1432446 - R 82 -4.1 -5.43553 | opp_overlap 1432441 1432439 1432446, overlap 1432441 ATTCAAAAAAGAAAA CGTGGAT GATC ATTCACG TTTTCTCTTTTTTAA TERM 1823 1432446 - 1432463 + r 84 -6.3 -5.06052 | opp_overlap 1432446 1432441, overlap 1432441 1432439 ATTCAAAAAAGAAAA CGTGGAT GATC ATTCACG TTTTCTCTTTTTTAA M28_Spy1432 1434124 - 1432475 - | sodium-dependent phosphate transporter TERM 1824 1434066 - 1434053 - G 72 -4.5 -4.70515 | GATACTGAAAAGAAA GAGAC CTAA GCCTC CAAAGAAATGAAATG M28_Spy1433 1434308 - 1435030 + | hypothetical protein M28_Spy1434 1436001 - 1435159 - | degV family protein TERM 1825 1435361 - 1435371 + g 100 -6.8 -5.75342 | opp_overlap 1435361, overlap 1435347 ATTTCTTCTATCAAA GCAG AAA CTGC TTTTTTTTGACCACG TERM 1826 1436593 - 1436574 - g 78 -7.2 -4.35518 | gap 1, opp_overlap 1436574 1436572 1436569 1436575, overlap 1436575 1436576 1436578 AATTTGATATTAAAA CTCAGGCTT ATC AAGCCTG-G CTCTATCTTTTTACT TERM 1827 1436575 - 1436593 + G 70 -9.6 -2.60234 | opp_overlap 1436574 1436575 1436576 1436578, overlap 1436574 1436572 1436569 ATTTGATATTAAAAC TCAGGCTT ATC AAGCCTGG CTCTATCTTTTTACT TERM 1828 1436592 - 1436576 - g 76 -10.9 -2.51871 | opp_overlap 1436575 1436574 1436572 1436569, overlap 1436574 1436575 1436578 TTTGATATTAAAACT CAGGCTT ATC AAGCCTG GCTCTATCTTTTTAC TERM 1829 1436633 - 1436621 - g 88 -7.7 -5.16572 | ACTGAAGCTAAAAAA GAAGC TCA GCTTC TTAAAATGATTTTCA M28_Spy1435 1436291 - 1436851 + | TetR family transcriptional regulator TERM 1830 1436855 - 1436871 + T 95 -8.7 -5.39721 | opp_overlap 1436855 CTATTAACGTAAAAA GGTTCCT TTT GGGAACC TTTTTTATATAATAG TERM 1831 1436871 - 1436855 - T 86 -8 -4.7629 | opp_overlap 1436855 CTATTAACGTAAAAA GGTTCC TTTTG GGAACC TTTTTTATATAATAG M28_Spy1436 1437768 - 1436887 - | HAD superfamily hydrolase M28_Spy1437 1438330 - 1437713 - | hypothetical protein TERM 1832 1438450 - 1438422 - R 100 -11.2 -5.37345 | opp_overlap 1438426 TGTAAGGATAAAAAA GCAAGGATAAAA CCCAT TTTCATCCTTGC TACAAAAGATTCAAA lacD.1 1439504 - 1438527 - | tagatose 1,6-diphosphate aldolase M28_Spy1439 1439849 - 1439586 - | tagatose-6-phosphate kinase lacB.1 1440532 - 1440014 - | galactose-6-phosphate isomerase subunit LacB TERM 1833 1440229 - 1440215 - G 77 -8.6 -3.79251 | opp_overlap 1440214 GATTTTACCACCAAA GCCAAT CAC ATTGGC ATTCAATTCTTCCTT lacA.1 1440969 - 1440544 - | galactose-6-phosphate isomerase subunit LacA M28_Spy1442 1442677 - 1441226 - | PTS system, galactose-specific IIC component M28_Spy1443 1443008 - 1442703 - | PTS system, galactose-specific IIB component M28_Spy1444 1443474 - 1443001 - | PTS system, galactose-specific IIA component TERM 1834 1443271 - 1443299 + g 73 -10.4 -2.88427 | CAAGCAATACTTGGT TTCTGTATGCGG AATAG CCGCATACAAAA TATCTGACCCATCTT TERM 1835 1444328 - 1444317 - g 72 -4.4 -4.67011 | overlap 1444320 AATTCTATTGAAAAA TACC TCTT GGTA GATAACCAAAAATTC lacR.1 1443711 - 1444481 + | lactose phosphotransferase system repressor M28_Spy1446 1444678 - 1444508 - | copper chaperone copZ 1444888 - 1444685 - | copper chaperone copA 1447133 - 1444902 - | copper-exporting ATPase TERM 1836 1446876 - 1446898 + g 77 -8.4 -3.80569 | overlap 1446862 1446878 AGACCAAATAACCTT TAGGTCTTCG TCA CGACGACCTG TTTGCATGTGTTTTG TERM 1837 1446878 - 1446896 + g 72 -8.8 -3.46904 | overlap 1446862 1446876 ACCAAATAACCTTTA GGTCTTCG TCA CGACGACC TGTTTGCATGTGTTT copY 1447573 - 1447133 - | copAB ATPase metal-fist type repressor M28_Spy1450 1447733 - 1448734 + | esterase TERM 1838 1448778 - 1448745 - T 91 -5.3 -5.95286 | opp_overlap 1448745 1448772 ACTAAAAACAAAAAA CCCTTAAGGTGACTC TAAT AAGATACCTTAAAGG TTTTTAATTTAATCT TERM 1839 1448745 - 1448778 + T 76 -4.6 -5.02715 | opp_overlap 1448745, overlap 1448772 ACTAAAAACAAAAAA CCCTTAAGGTGACT CTAATA AGATACCTTAAAGG TTTTTAATTTAATCT rbfA 1449143 - 1448787 - | ribosome-binding factor A TERM 1840 1449049 - 1449065 + g 73 -2.1 -5.24531 | overlap 1449050 1449051 ATCGTTACTCCCTGA ACGCGTG GAT CACGCAC TTTTTTCTGAAGAAT TERM 1841 1449193 - 1449165 - R 100 -12.5 -4.13014 | opp_overlap 1449170, overlap 1449170 TCCACATTTTTAAAA CAAAAGCTAGGCT GAA AGCCCAGCTTATG ACATTGCTACCTGTT TERM 1842 1449188 - 1449170 - R 100 -11 -5.08255 | opp_overlap 1449170, overlap 1449165 ATTTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGCTAC TERM 1843 1449170 - 1449188 + r 75 -8.8 -3.37464 | opp_overlap 1449170 1449165 ATTTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGCTAC infB 1452204 - 1449343 - | translation initiation factor IF-2 TERM 1844 1450052 - 1450065 + g 84 -8.1 -4.72986 | GATCGCTCCTCACCA GCTGC ACGC GCAGC TTTTTCATCAGCGTA M28_Spy1453 1452526 - 1452224 - | hypothetical protein M28_Spy1454 1452818 - 1452519 - | putative cytoplasmic protein nusA 1453988 - 1452831 - | transcription elongation factor NusA M28_Spy1456 1454699 - 1454163 - | hypothetical protein TERM 1845 1454732 - 1454711 - R 80 -6.5 -4.68724 | CCACTTAATACAAAA GCGGCGAGA CATA TCCCACCAC CTTTCTGTATTATTT trmB 1455593 - 1454958 - | tRNA (guanine-N(7))-methyltransferase TERM 1846 1455126 - 1455136 + g 73 -6.8 -4.15854 | GTACTCAAACAAGCC CCGA TTA TCGG TTTTAAAATGAATTT M28_Spy1458 1456384 - 1455593 - | phosphotransferase family protein M28_Spy1459 1457482 - 1456448 - | EcsB M28_Spy1460 1458210 - 1457485 - | ABC-type transporter ATP-binding protein ecsA TERM 1847 1458435 - 1458464 + G 100 -14.5 -3.8505 | gap 1, opp_overlap 1458437 1458439 GTTCGTAACTTACTA GAGATGACT-GCTG AGA CAGCTAGTCATCTC TTTGCTCGTATTCCT TERM 1848 1458462 - 1458437 - g 80 -11.3 -2.82933 | gap 1, opp_overlap 1458435, overlap 1458439 TCGTAACTTACTAGA GATGACT-GCTG AGA CAGCTAGTCATC TCTTTGCTCGTATTC hit 1458282 - 1458701 + | bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) M28_Spy1462 1458698 - 1459054 + | hypothetical protein TERM 1849 1459090 - 1459115 + T 100 -9.1 -5.47159 | opp_overlap 1459090 1459092 1459094 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1850 1459115 - 1459090 - T 74 -9.1 -3.01497 | opp_overlap 1459090, overlap 1459092 1459094 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1851 1459154 - 1459177 + T 87 -11 -3.36273 | opp_overlap 1459154 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA TERM 1852 1459177 - 1459154 - T 100 -11 -5.19879 | opp_overlap 1459154 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA lytR 1460448 - 1459165 - | LytR family transcriptional regulator M28_Spy1464 1460981 - 1460457 - | acetyltransferase M28_Spy1465 1461417 - 1460956 - | ATP/GTP hydrolase TERM 1853 1461469 - 1461442 - R 91 -2.8 -6.00086 | gap 1, overlap 1461446 ATATCAGAAAAAAAA CATACTTCCAAGC ACT ACCTAGAAG-ATG ACTCCAATAAGGTAT M28_Spy1466 1463031 - 1461571 - | guanine-hypoxanthine permease TERM 1854 1463114 - 1463151 + H 70 -8 -3.20063 | opp_overlap 1463144 TTGACACCTCATTAT TATTGTTATTGTTCGT ATTAAA ATGAACAATAACACTA TGTTACCATTTTTTT M28_Spy1467 1463295 - 1464107 + | HAD superfamily hydrolase TERM 1855 1464143 - 1464120 - f 71 -6.8 -4.11623 | opp_overlap 1464120 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTTTTCTTCTGTCAA TERM 1856 1464120 - 1464143 + F 95 -9 -5.24796 | opp_overlap 1464120 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTTTTCTTCTGTCAA manL 1464459 - 1465451 + | PTS system, mannose-specific IIAB component manM 1465540 - 1466349 + | PTS system, mannose-specific IIC component TERM 1857 1466741 - 1466751 + G 71 -6.8 -4.0098 | CGTCCTATCCTTGGG GCAC TTG GTGC TTCTTTGGCTTCAAC manN 1466366 - 1467277 + | PTS system, mannose-specific IID component TERM 1858 1467288 - 1467312 + F 100 -10.8 -5.43621 | opp_overlap 1467287 1467291 TGTAATCAACCAATG GAAGTCTGAG ATGAA CTCAGGCTTC TTTTTTATGCTTTAT manO 1467391 - 1467750 + | putative cytoplasmic protein serS 1468142 - 1469419 + | seryl-tRNA synthetase TERM 1859 1469428 - 1469457 + T 100 -13.7 -4.07678 | opp_overlap 1469425 1469424 1469428 TAAATAATAAACTCA CCCCAGAGATCAT TAAA GTGATTTCTGGGG TTTACTATTTTAAAG TERM 1860 1469457 - 1469428 - T 81 -10.8 -2.82317 | opp_overlap 1469428, overlap 1469425 1469424 TAAATAATAAACTCA CCCCAGAGATCA TTAAAG TGATTTCTGGGG TTTACTATTTTAAAG TERM 1861 1469679 - 1469667 - T 73 -7.7 -3.7948 | opp_overlap 1469667 TTAATATTTACGAAA GCGTT GGT AACGC TCATCTAATAATTGG accD 1470422 - 1469652 - | acetyl-CoA carboxylase subunit alpha TERM 1862 1470321 - 1470310 - G 73 -5.8 -4.63527 | CCATCATCTGAAAAA TGGC GATC GCCA TGCAGTTCCATAAAG accA 1471285 - 1470419 - | acetyl-CoA carboxylase subunit beta accC 1472658 - 1471294 - | acetyl-CoA carboxylase biotin carboxylase subunit fabZ 1473112 - 1472690 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 1863 1472806 - 1472830 + g 70 -2.8 -5.09426 | AGGTTGCTGTCATCA CAAGTTGATC ACCAG GGACGACTTG TTTTTTGAACTTCAC accB 1473609 - 1473109 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 1864 1473435 - 1473471 + g 95 -13.1 -3.59402 | opp_overlap 1473441, overlap 1473438 AAGCAGTTGAATTCG GAACAAGTTGTACCTGT GGT ACAGGCACAGCATGTTC TTGATTTGATGTCGA TERM 1865 1473438 - 1473468 + g 79 -9 -3.92143 | opp_overlap 1473441, overlap 1473435 CAGTTGAATTCGGAA CAAGTTGTACCTGT GGT ACAGGCACAGCATG TTCTTGATTTGATGT TERM 1866 1473465 - 1473441 - G 76 -9.3 -3.65314 | opp_overlap 1473438 1473435 TTGAATTCGGAACAA GTTGTACCTGT GGT ACAGGCACAGC ATGTTCTTGATTTGA fabF 1474843 - 1473611 - | 3-oxoacyl-(acyl carrier protein) synthase II fabG 1475592 - 1474858 - | 3-ketoacyl-(acyl-carrier-protein) reductase fabD 1476526 - 1475582 - | acyl-carrier-protein S-malonyltransferase fabK 1477516 - 1476545 - | enoyl-[acyl-carrier protein] reductase (NADH) acpP 1477942 - 1477718 - | acyl carrier protein TERM 1867 1477995 - 1477983 - R 73 -7.7 -3.85817 | ATTTGTTTTTATAAA TGTGC TAG GCACA TGAATAACTAGATTT fabH 1478977 - 1478003 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1868 1478810 - 1478757 - G 77 -5 -5.00467 | gap 3, overlap 1478761 1478763 1478766 1478794 GCAACAATAATAAAA TCAA-TAGC--ATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGATCAGCAACCTGA ATAGCTAGGTCACTA TERM 1869 1478801 - 1478761 - G 83 -9.4 -3.87952 | gap 2, overlap 1478757 1478763 1478766 1478794 CAATAATAAAATCAA TAGCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C-A GCAACCTGAATAGCT TERM 1870 1478800 - 1478763 - G 100 -14.5 -3.4959 | gap 1, overlap 1478761 1478757 1478766 1478794 ATAATAAAATCAATA GCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C AGCAACCTGAATAGC TERM 1871 1478798 - 1478766 - G 100 -17.3 -2.86186 | overlap 1478763 1478761 1478757 1478794 ATAAAATCAATAGCA TCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGA TCAGCAACCTGAATA M28_Spy1484 1479430 - 1478978 - | MarR family transcriptional regulator phaB 1480280 - 1479489 - | enoyl-CoA hydratase TERM 1872 1479854 - 1479838 - G 84 -7.9 -4.68511 | overlap 1479839 GTCAATAGAAATAAA CCACCGG CAT CCGGTGC TAGTCCAACATTTAC TERM 1873 1479853 - 1479839 - G 85 -11.4 -3.40022 | overlap 1479838 TCAATAGAAATAAAC CACCGG CAT CCGGTG CTAGTCCAACATTTA TERM 1874 1480454 - 1480489 + r 71 -7.7 -3.695 | opp_overlap 1480454 TTTGACGTAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAGATTATACG TTTGACATCTTTAAA TERM 1875 1480489 - 1480454 - R 84 -5.5 -5.47218 | opp_overlap 1480454 TTTGACGTAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAGATTATACG TTTGACATCTTTAAA dnaJ 1481690 - 1480500 - | chaperone protein TERM 1876 1480690 - 1480711 + g 70 -5.9 -4.33907 | gap 1, overlap 1480676 CGGAGTTTTGGTGCT CCTTT-GCCT TTG AGGCGGAAGG TTTTACCTGTTTGTG TERM 1877 1481295 - 1481281 - G 73 -8.6 -3.64866 | opp_overlap 1481275, overlap 1481269 ACACGATATTGCAAA TCGTCA CCT TGACGA GGGGCATTTGGGTTT TERM 1878 1481784 - 1481799 + r 73 -7.6 -3.82605 | CACGCTTTAGCCTGT GTTCGA ATAA TCGAAC TTGTATTCCTTTCTT TERM 1879 1481881 - 1481860 - R 93 -8.8 -4.67353 | opp_overlap 1481853 1481850 1481862 TTATTTAGCCAAAAA CAGAGGTT TGGTAC AACCTCTG AATTCGGATATTAAT dnaK 1483743 - 1481917 - | molecular chaperone DnaK grpE 1484496 - 1483924 - | hypothetical protein TERM 1880 1484408 - 1484418 + g 71 -6.8 -4.03888 | GTCTCTTCAGTTTCA GTGG CTT CCAC TTCTTCTTGTAAATC hrcA 1485533 - 1484499 - | heat-inducible transcription repressor TERM 1881 1485555 - 1485581 + r 78 -7.4 -4.14004 | ACCACTCCCTTTCGT TTAGCACTCTAT TTA GTAGACTGCTAA TTTATAATTCTATTA TERM 1882 1485675 - 1485629 - R 91 -4.6 -5.80364 | opp_overlap 1485639, overlap 1485639 ATGTCAAGAAAAAAA CTCAAAAAAATTAGCACTCTTT TAT AAAGAGTGCTAATTTCAGTCAT AGTTTGTTAAATCGT TERM 1883 1485639 - 1485665 + r 100 -15.4 -3.70438 | opp_overlap 1485639 1485629 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGTGCTAA TTTCAGTCATAGTTT TERM 1884 1485665 - 1485639 - R 100 -15.4 -5.63857 | opp_overlap 1485639, overlap 1485629 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGTGCTAA TTTCAGTCATAGTTT M28_Spy1490 1486237 - 1485668 - | N-acetylmuramoyl-L-alanine amidase TERM 1885 1485716 - 1485726 + g 70 -5.4 -4.45485 | GACCTGAATCAGTCG CCTA GCA TAGG TTTTATCAGTATAAT M28_Spy1491 1486977 - 1486234 - | D-alanyl-D-alanine carboxypeptidase TERM 1886 1486919 - 1486906 - G 73 -6.7 -4.15044 | CTCTGGCTTAATAAA GAGGT AAAT ACCTC CGACAAAGAGCAGAA M28_Spy1492 1487674 - 1486967 - | phosphoglycerate mutase TERM 1887 1488060 - 1488035 - R 100 -13.3 -5.02074 | opp_overlap 1488035 TTATGTTGCAAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT TERM 1888 1488035 - 1488060 + r 100 -13.3 -5.54894 | opp_overlap 1488035 TTATGTTGCAAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT M28_Spy1493 1488314 - 1488066 - | hypothetical protein M28_Spy1494 1488739 - 1488524 - | hypothetical protein TERM 1889 1488689 - 1488665 - G 81 -5.6 -5.05601 | CATGACATACAAAAA GGCAGCCTGT GAAAG ACCGACCGCC TTTTTTTCAGAGACA gatB 1490175 - 1488736 - | aspartyl/glutamyl-tRNA amidotransferase subunit B gatA 1491641 - 1490175 - | aspartyl/glutamyl-tRNA amidotransferase subunit A gatC 1491943 - 1491641 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 1890 1492158 - 1492123 - R 100 -20 -5.24989 | CTATACAGCAAAAAA CTTCCTGACTAAGGTC AGAA AACCTTAGTCAGGAAG TGTGACAAACTAAAC M28_Spy1498 1492384 - 1492175 - | pyruvate, phosphate dikinase M28_Spy1499 1492493 - 1492356 - | pyruvate, phosphate dikinase M28_Spy1500 1493494 - 1492937 - | nicotinamidase TERM 1891 1493600 - 1493628 + r 83 -6.1 -5.19879 | opp_overlap 1493605, overlap 1493602 1493605 CTACCATTAACAGCA AAAAACATCTCTT TTC AAGAGATGTTGTC TTTTTCTATTTAAAA TERM 1892 1493602 - 1493626 + r 85 -8.7 -4.22132 | opp_overlap 1493605, overlap 1493600 1493605 ACCATTAACAGCAAA AAACATCTCTT TTC AAGAGATGTTG TCTTTTTCTATTTAA TERM 1893 1493623 - 1493605 - R 100 -10.4 -5.28683 | opp_overlap 1493605 1493602 1493600 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT TERM 1894 1493605 - 1493623 + r 100 -10.4 -4.17582 | opp_overlap 1493605, overlap 1493602 1493600 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT codY 1494483 - 1493638 - | transcriptional repressor CodY TERM 1895 1493843 - 1493853 + g 73 -6.8 -4.15066 | opp_overlap 1493842 1493852, overlap 1493852 AACTCTCCAAGAATT GCTG CAA CAGC TTTCATTTCTGAATA M28_Spy1502 1495852 - 1494638 - | aminotransferase AlaT TERM 1896 1494871 - 1494861 - G 71 -6.8 -3.99693 | opp_overlap 1494861, overlap 1494859 GGAAATAAATAAAGA CCTG CTT CAGG TTTAACTGCCGATAA TERM 1897 1496053 - 1496039 - g 83 -3.6 -5.68023 | opp_overlap 1496039 GTATAATGAAAAAAA GAATAA AAG CTATTC TTGTCAAACTGTTAA M28_Spy1503 1495993 - 1496535 + | universal stress protein M28_Spy1504 1498046 - 1496658 - | HAD superfamily hydrolase TERM 1898 1497488 - 1497508 + g 70 -3.3 -4.84642 | TTCTTGTAATTTTTA TATGAGGGA ACT TCTCTTGTA TTTTCTTAGTTTCAG asnB 1498118 - 1499083 + | L-asparaginase TERM 1899 1499095 - 1499136 + T 100 -18.4 -2.9587 | opp_overlap 1499102, overlap 1499102 ATAATCTAGCTTCCT TTAGAAATGTCCCACTAA AACATA TTAGTGGGACATTTCTAG TACTTTAAGCTTTAA TERM 1900 1499102 - 1499129 + T 100 -12.9 -4.04209 | opp_overlap 1499102, overlap 1499095 AGCTTCCTTTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA TERM 1901 1499129 - 1499102 - T 95 -12.9 -3.85817 | opp_overlap 1499102 1499095 AGCTTCCTTTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA M28_Spy1506 1500136 - 1499432 - | hypothetical protein M28_Spy1507 1500334 - 1500149 - | putative ATP transporter M28_Spy1508 1501052 - 1500363 - | putative ATP transporter TERM 1902 1500628 - 1500612 - G 77 -5.1 -4.88228 | overlap 1500614 ATCCAAGATTAAAAA TTCTGGA AAA TCCAGTA TCGAAAGACCAATAG recG 1503360 - 1501345 - | ATP-dependent DNA helicase TERM 1903 1503533 - 1503497 - H 72 -8 -3.34716 | opp_overlap 1503500, overlap 1503496 1503498 TGAGGTCTCAAAAAT CCCGAGTGGCGTCAAT CTCGT ATTGACGCCACTCTTT TACCACAGCAAAAAG TERM 1904 1503532 - 1503498 - H 83 -11.5 -2.60508 | opp_overlap 1503500, overlap 1503497 1503496 GAGGTCTCAAAAATC CCGAGTGGCGTCAAT CTCGT ATTGACGCCACTCTT TTACCACAGCAAAAA TERM 1905 1503500 - 1503530 + H 100 -18.5 -4.07568 | opp_overlap 1503498 1503497 1503496 GGTCTCAAAAATCCC GAGTGGCGTCAAT CTCGT ATTGACGCCACTC TTTTACCACAGCAAA TERM 1906 1503590 - 1503580 - g 81 -6.8 -4.70659 | CTTTATATGTAAAAA TCGG AAA CCGA ATGTCAAATCAGCAG TERM 1907 1503654 - 1503676 + G 74 -9.3 -3.60072 | overlap 1503651 TTGTCTACGTTCTGA CTCTTGTAT CTATT ATACAAGAG TTCCTATTTATTTTC M28_Spy1510 1503557 - 1503697 + | hypothetical protein M28_Spy1511 1505189 - 1503735 - | cobalt transport ATP-binding protein cbiO TERM 1908 1504669 - 1504682 + gT 71 -6.7 -4.04587 | CCTTGCATAATGGCC GTTGC AATA GCAAC TCTTTGTTTTTGCCC M28_Spy1512 1505806 - 1505126 - | cobalt transport protein cbiQ M28_Spy1513 1506396 - 1505803 - | permease M28_Spy1514 1508096 - 1506393 - | ABC transporter ATP-binding protein TERM 1909 1507849 - 1507837 - GR 70 -4.1 -4.81852 | CCATAACGAACAAAA CCTCT TAA AAAGG CTAGAGCAATCAAAA M28_Spy1515 1509819 - 1508056 - | ABC transporter ATP-binding protein fhuC 1510652 - 1509816 - | ferrichrome transport ATP-binding protein M28_Spy1517 1511698 - 1510649 - | ferrichrome transport system permease protein fhuB TERM 1910 1510896 - 1510876 - GR 87 -8.3 -4.49958 | overlap 1510893 AGCCTAGGAAAGAAA CCACTCCAA CGA TCGAAGTGG CTACCGAAGCCAATA M28_Spy1518 1512590 - 1511673 - | ferrichrome-binding protein shp 1513416 - 1512541 - | putative heme binding protein TERM 1911 1513039 - 1513050 + gr 72 -4.4 -4.70266 | TAGTGTTGTCCCATT GGTA TCAG TACC TTTTTGGGTGATATT M28_Spy1520 1517446 - 1513613 - | putative Fe3+-siderophore transport protein TERM 1912 1517189 - 1517199 + g 85 -6.8 -5.14965 | ATCAAAGGTTCGCTC GCCT TCC AGGC TTTTTTCATAGACAT TERM 1913 1517827 - 1517801 - R 100 -9.5 -5.89921 | opp_overlap 1517806 ATCACAATAAAAAAA GACAATAGCCC TAATC GTGCTATTGTC TCAAAATCATTTATT isp2 1519441 - 1517930 - | immunogenic secreted protein TERM 1914 1519061 - 1519086 + g 72 -8.3 -3.53298 | overlap 1519061 1519079 TGGTGATGGTTTGGG CTGATCAGTCG GTTT TGGCTGGTCAG TTGGTTTCGAATGAT TERM 1915 1519268 - 1519280 + g 82 -4.1 -5.4593 | AGTTTTATCTGATGT TGTAG GTG CTGCA TTTTTATTATTTTCC alr 1520628 - 1519528 - | alanine racemase acpS 1520981 - 1520625 - | 4'-phosphopantetheinyl transferase TERM 1916 1521064 - 1521028 - R 90 -11.7 -3.79071 | opp_overlap 1521034 1521037, overlap 1521030 GTTAGAAGATTTAAA CAGTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTCTA TATACCTAACTTTGT TERM 1917 1521062 - 1521030 - R 90 -12.1 -3.47542 | opp_overlap 1521034 1521037, overlap 1521028 TAGAAGATTTAAACA GTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTC TATATACCTAACTTT TERM 1918 1521034 - 1521058 + r 100 -15.9 -4.1399 | opp_overlap 1521030 1521028, overlap 1521037 AGATTTAAACAGTGA GAAGCTGAGAA TTA TTCTCAGCTTC TTTCTATATACCTAA TERM 1919 1521037 - 1521055 + r 100 -11.8 -4.18674 | opp_overlap 1521030 1521028, overlap 1521034 TTTAAACAGTGAGAA GCTGAGAA TTA TTCTCAGC TTCTTTCTATATACC secA 1523616 - 1521097 - | preprotein translocase subunit SecA TERM 1920 1523530 - 1523541 + g 86 -4.4 -5.51165 | CACCATTTGGTCTGC GTAG GATT CTAC TTTTTTTGCAATTTT pmi 1524703 - 1523750 - | mannose-6-phosphate isomerase scrK 1525754 - 1524798 - | fructokinase TERM 1921 1525814 - 1525862 + r 100 -16.5 -2.52933 | opp_overlap 1525814 1525819, overlap 1525819 1525828 TGTCATCAAAACCTA TAAAAGACTAAAAATCTGGGA CTATTCA TCTCAGATTTTTAGTCTTTTG GTTAATCAATTCCAG TERM 1922 1525862 - 1525814 - R 86 -12.8 -2.77781 | opp_overlap 1525814 1525819 1525828, overlap 1525819 TGTCATCAAAACCTA TAAAAGACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTCTTTTG GTTAATCAATTCCAG TERM 1923 1525857 - 1525819 - R 100 -12.7 -4.54477 | opp_overlap 1525814 1525819 1525828, overlap 1525814 TCAAAACCTATAAAA GACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTC TTTTGGTTAATCAAT TERM 1924 1525819 - 1525857 + r 100 -14.2 -4.45945 | opp_overlap 1525819 1525814, overlap 1525814 1525828 TCAAAACCTATAAAA GACTAAAAATCTGGGA CTATTCA TCTCAGATTTTTAGTC TTTTGGTTAATCAAT endoS 1529014 - 1525946 - | endo-beta-N-acetylglucosaminidase F2 precursor TERM 1925 1527010 - 1527024 + gr 73 -7.8 -3.89085 | TTTTGCCATAGGTAT CTGGGT AAT GCCCAG TTGGTTTTTGCTTGT TERM 1926 1528314 - 1528327 + gr 71 -5.3 -4.48299 | opp_overlap 1528312 1528314 TATTCATCAACAATA GCTTT GGCT AAAGC TTTATTTCCCTCTGG M28_Spy1528 1529148 - 1528984 - | hypothetical protein TERM 1927 1529157 - 1529190 + r 100 -14.8 -4.015 | opp_overlap 1529165, overlap 1529165 CTGCCATGAATGGCA GGACAAAAGAGCTG CTTAGT TAGCTCTTTTGTCC TTATTTGATAAGTGC scrA 1531074 - 1529191 - | PTS system, sucrose-specific IIABC component TERM 1928 1530778 - 1530744 - G 83 -6.4 -5.10208 | opp_overlap 1530746, overlap 1530746 TAATGGGAACAAAAA CATCTCCAAACGTACG AAT CGCCCGTTGGAAGATA TTGCCTTGTTTGCCT TERM 1929 1530776 - 1530746 - G 73 -6.8 -4.16909 | opp_overlap 1530746, overlap 1530744 ATGGGAACAAAAACA TCTCCAAACGTACG AAT CGCCCGTTGGAAGA TATTGCCTTGTTTGC TERM 1930 1531207 - 1531226 + H 78 -2.2 -5.58522 | ATCACTAATATTTTT TATGTCAA GCGT TTAACATA TTTTTATTTTATATG scrB 1531313 - 1532755 + | sucrose-6-phosphate hydrolase scrR 1532760 - 1533725 + | sucrose operon repressor TERM 1931 1533753 - 1533811 + T 100 -21.5 -3.15699 | opp_overlap 1533759 1533765, overlap 1533759 1533765 CAATCACTAATTACT CTAAAAGACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTCTTTTAA TATTCGTACATAAAT TERM 1932 1533759 - 1533805 + T 100 -20.5 -4.44797 | opp_overlap 1533759 1533765, overlap 1533753 1533765 CTAATTACTCTAAAA GACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1933 1533805 - 1533759 - T 100 -18.3 -4.17023 | opp_overlap 1533759 1533753 1533765, overlap 1533765 CTAATTACTCTAAAA GACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1934 1533765 - 1533799 + T 100 -12.3 -4.49352 | opp_overlap 1533759 1533765, overlap 1533759 1533753 ACTCTAAAAGACAAA CAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTG TTTGTCTTTTAATAT TERM 1935 1533799 - 1533765 - T 100 -10.1 -4.45771 | opp_overlap 1533765 1533759 1533753, overlap 1533759 ACTCTAAAAGACAAA CAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTG TTTGTCTTTTAATAT TERM 1936 1533861 - 1533835 - T 85 -6.7 -5.24449 | gap 1, opp_overlap 1533835 CATAAATTGAAAAAA TCGGATACAATC CTAA GATTGC-TCCGA CTTATTATGATTTAT nusB 1534336 - 1533866 - | transcription antitermination protein NusB TERM 1937 1534273 - 1534263 - GT 76 -6.8 -4.44046 | TCTATGTTAAATAAA GCCT GAA AGGC ACGTTCACGCAAATC M28_Spy1533 1534700 - 1534311 - | Gls24 family general stress protein efp 1535303 - 1534746 - | elongation factor P comEB 1535858 - 1535391 - | ComE operon protein 2 M28_Spy1536 1537004 - 1535892 - | Xaa-Pro dipeptidase TERM 1938 1537075 - 1537058 - R 88 -7.7 -4.98616 | TTAAAAGATTAAAAA GGAGCTC AAAC GAACTCC TAATCCTATTGTTGT uvrA 1539939 - 1537081 - | excinuclease ABC subunit A corA 1540112 - 1541056 + | magnesium and cobalt transport protein TERM 1939 1541446 - 1541428 - g 71 -3.8 -4.95896 | opp_overlap 1541430, overlap 1541430 AGAAACTGACAAAAA CACCAATC CTT GGTTGATG TGGCTAGATACCTCT M28_Spy1539 1541189 - 1541845 + | hypothetical protein TERM 1940 1541857 - 1541877 + T 80 -6.9 -4.6038 | ATAACAATCATTTCA TCCTTGC TGTCTAC GCAAGGA TTTTCGTTTACTATC TERM 1941 1541946 - 1541977 + T 75 -9 -3.44334 | gap 1, opp_overlap 1541953, overlap 1541953 CTAGTCCTAGTCAAC TAAA-AAACAGTCCG AAA TGGACTGTTTGTTTA TTAGTCTTCGTTTAC TERM 1942 1541953 - 1541969 + T 93 -8.7 -4.71791 | opp_overlap 1541953, overlap 1541946 TAGTCAACTAAAAAA CAGTCCG AAA TGGACTG TTTGTTTATTAGTCT TERM 1943 1541969 - 1541953 - T 90 -8 -5.28481 | opp_overlap 1541953 1541946 TAGTCAACTAAAAAA CAGTCC GAAAT GGACTG TTTGTTTATTAGTCT rpsR 1542217 - 1541978 - | 30S ribosomal protein S18 ssb2.2 1542873 - 1542382 - | single-strand DNA-binding protein rpsF 1543185 - 1542895 - | 30S ribosomal protein S6 M28_Spy1543 1543651 - 1543358 - | hypothetical protein TERM 1944 1544620 - 1544630 + G 70 -3.2 -4.84363 | AATACTAAAGGGAGA CTTC TAG GAGG TTTTTGGTCATTTCC mutY 1543819 - 1544973 + | A/G-specific adenine DNA glycosylase TERM 1945 1544980 - 1544998 + F 82 -5.3 -5.29846 | AATGCTTAATCGCAA GTGAACT ATAAC GGTTCAC TTTTTGTTTACAATT TERM 1946 1545015 - 1545032 + F 72 -4.9 -4.70266 | TTTTGTTTACAATTC CTTTACG CCGC TGTAAAG TTTTTCGGTGATATT M28_Spy1545 1545040 - 1545426 + | transcriptional regulator M28_Spy1546 1545413 - 1545637 + | transcriptional regulator TERM 1947 1545650 - 1545688 + T 100 -17 -3.09933 | opp_overlap 1545656 1545660, overlap 1545656 1545660 TGAAGTTAGTAGGTC ATAAAATAAAGCTCAGCG TGA CGCTGGGCTTTATTTTAG TTAACTCAATTCAGC TERM 1948 1545656 - 1545682 + T 100 -16 -4.43477 | opp_overlap 1545656 1545660, overlap 1545650 1545660 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1949 1545682 - 1545656 - T 100 -13.8 -4.40804 | opp_overlap 1545656 1545650 1545660, overlap 1545660 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1950 1545678 - 1545660 - T 100 -10.2 -4.77775 | opp_overlap 1545656 1545650 1545660, overlap 1545656 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC TERM 1951 1545660 - 1545678 + T 100 -12.4 -4.78077 | opp_overlap 1545660 1545656, overlap 1545656 1545650 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC trx.2 1546045 - 1545689 - | thioredoxin M28_Spy1548 1546587 - 1546084 - | phosphatidylglycerophosphatase B mutS2 1549044 - 1546588 - | DNA mismatch repair protein TERM 1952 1549053 - 1549024 - G 78 -7.3 -4.41348 | gap 1, opp_overlap 1549024 TTTCTCGTAAATAAA GAACCTAAAGGTGA AAC TCA-CTCCAGGTTC TTATATTAGTCACAA M28_Spy1550 1549621 - 1549076 - | colicin V production protein M28_Spy1551 1549932 - 1549624 - | putative cytoplasmic protein TERM 1953 1549894 - 1549908 + g 77 -8.6 -3.89881 | CAATGTTAATGTTTT TTCACC AAA GGTGAA TTTATAGCGATTAAT TERM 1954 1550474 - 1550464 - gH 70 -2.6 -5.06451 | GATGATTCTAAAAAA TTAT CGG ATAA AACCATTCAACAGAT M28_Spy1552 1550089 - 1550991 + | ribonuclease HIII TERM 1955 1551034 - 1551020 - gf 79 -8.6 -3.76781 | opp_overlap 1551019 AAACAGTTTATTAAA GAATGG GGC CCATTC ACTCTCTTTTTAATT spi 1550936 - 1551595 + | signal peptidase I TERM 1956 1551617 - 1551602 - f 100 -10.4 -5.37345 | opp_overlap 1551602 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG TERM 1957 1551602 - 1551617 + F 100 -10.4 -4.35874 | opp_overlap 1551602 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG recD 1551653 - 1554016 + | exodeoxyribonuclease V alpha chain TERM 1958 1554137 - 1554125 - g 74 -4.8 -4.7254 | ATTTCTTATGAAAAA GTGC GTCAG GCAC TCAAAACGTCTACTA TERM 1959 1554485 - 1554468 - g 70 -8.5 -3.35015 | overlap 1554471 TTAACCAGTTCACAA CAACCAT GTCA ATGGTTG GAACTATCCTTATCC M28_Spy1555 1554107 - 1554589 + | hypothetical protein TERM 1960 1554650 - 1554595 - T 84 -8.39999 -4.63932 | opp_overlap 1554607, overlap 1554598 1554607 1554610 TATGCTGTAATAAAA TAATGGACCAAAGAAGCTGATTAGGG AAAT CCCTAATCAGCTTCTTTTTTCTCCAA AATGAGGCGGACGGA TERM 1961 1554647 - 1554598 - T 100 -12.3 -4.43307 | opp_overlap 1554607, overlap 1554595 1554607 1554610 GCTGTAATAAAATAA TGGACCAAAGAAGCTGATTAGGG AAAT CCCTAATCAGCTTCTTTTTTCTC CAAAATGAGGCGGAC TERM 1962 1554607 - 1554638 + T 100 -20.4 -5.24531 | opp_overlap 1554598 1554595 1554607 1554610 AAATAATGGACCAAA GAAGCTGATTAGGG AAAT CCCTAATCAGCTTC TTTTTTCTCCAAAAT TERM 1963 1554638 - 1554607 - T 100 -20.4 -3.82531 | opp_overlap 1554607, overlap 1554598 1554595 1554610 AAATAATGGACCAAA GAAGCTGATTAGGG AAAT CCCTAATCAGCTTC TTTTTTCTCCAAAAT TERM 1964 1554635 - 1554610 - T 100 -16.3 -4.02571 | opp_overlap 1554607, overlap 1554607 1554598 1554595 TAATGGACCAAAGAA GCTGATTAGGG AAAT CCCTAATCAGC TTCTTTTTTCTCCAA dinP 1555776 - 1554682 - | DNA polymerase IV TERM 1965 1556350 - 1556324 - g 71 -6.5 -4.14511 | AACTTCATGCCAAAA GGTGGTATCCG TATGG CGGAAACGACC CTTAAAGAAAACGGC pfl 1555958 - 1558312 + | formate acetyltransferase TERM 1966 1558345 - 1558384 + T 100 -21.1 -5.1925 | opp_overlap 1558345 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTGTTC TTTTTTCACTTATAA TERM 1967 1558384 - 1558345 - T 100 -21.1 -5.3236 | opp_overlap 1558345 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTGTTC TTTTTTCACTTATAA M28_Spy1558 1559442 - 1558492 - | penicillin-binding protein M28_Spy1559 1560179 - 1559427 - | C3-degrading proteinase TERM 1968 1560510 - 1560531 + G 80 -2.2 -5.67711 | overlap 1560507 CTTAGACTGATACAA GCTTTGCT AGTTTC GGCAATGC TTTTTATTTTCTTTA TERM 1969 1560815 - 1560827 + G 85 -9.1 -4.18702 | AACTTTACTTGCTAT GGCTG CAG CAGCC TTTATTGGAGCTTAT M28_Spy1560 1560441 - 1561373 + | hypothetical protein TERM 1970 1561379 - 1561406 + T 75 -4.9 -4.98616 | opp_overlap 1561379 AAATAGATAAGATAA CGTTTCTGG GAATCACTAA CCAGAGACG TTTTTAATATTTTAC TERM 1971 1561678 - 1561654 - T 79 -4.3 -5.38951 | opp_overlap 1561654 AACTCATATAAAAAA GACAAGTTC CTTAAGC GAGCTTGTC TTGAGTCTAAAAGAA glpF.2 1562656 - 1561709 - | aquaporin TERM 1972 1562725 - 1562685 - R 73 -4.1 -4.97957 | gap 1, opp_overlap 1562685 1562687 1562689 CACACAATAATAAAA GCGGTAAAGAAAAGGACC ATAAAA GG-CCTTATCTTTATCAC TTTATTTCATAGTAT M28_Spy1562 1562873 - 1562727 - | universal stress protein norA 1564360 - 1563059 - | quinolone resistance norA protein TERM 1973 1563436 - 1563409 - G 76 -2.1 -5.42259 | gap 1, opp_overlap 1563416, overlap 1563414 1563415 CCATTGCTAAAAAAA GATAACTTGGGT ACAAG ACCCAT-TTATC GCCTTTAGCATCCAT TERM 1974 1564233 - 1564243 + g 74 -4 -5.13741 | opp_overlap 1564230, overlap 1564230 ATGGCCACAAAATGT TTGT TAA ACAA TTTTTCTTCCATTGA srv 1564361 - 1565080 + | Crp family transcriptional regulator TERM 1975 1565847 - 1565811 - g 87 -5.1 -5.41143 | opp_overlap 1565820, overlap 1565820 1565823 TAGTCGTTAAAAAAA GGAGACAAATCACTGTC GAA GACAGGGATTTTATTCC TCTTGAGACACAGCC TERM 1976 1565820 - 1565838 + G 83 -7.4 -4.78753 | opp_overlap 1565811 1565820 1565823 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1977 1565838 - 1565820 - g 76 -7.4 -4.24562 | opp_overlap 1565820, overlap 1565811 1565823 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1978 1566105 - 1566093 - g 75 -5.5 -4.67353 | CCAGCCACTCAAAAA CCCAC CAA GTGAG AGCTGATTGGGCAAA pepXP 1565102 - 1567384 + | x-prolyl-dipeptidyl aminopeptidase TERM 1979 1567422 - 1567389 - T 81 -7.6 -4.41302 | opp_overlap 1567394, overlap 1567394 CATCAAATTAACAAA TAAAAGTGCTTAGC AATATA ACTAAGCACTTTTT TGTTAATTGGTCTTA TERM 1980 1567394 - 1567417 + T 87 -6.8 -5.5604 | opp_overlap 1567389 1567394 AATTAACAAATAAAA GTGCTTAG CAATATAA CTAAGCAC TTTTTTGTTAATTGG TERM 1981 1567417 - 1567394 - T 88 -7.5 -5.13527 | opp_overlap 1567394, overlap 1567389 AATTAACAAATAAAA GTGCTTAGC AATATA ACTAAGCAC TTTTTTGTTAATTGG M28_Spy1566 1567685 - 1567464 - | Cro/CI family transcriptional regulator TERM 1982 1567525 - 1567499 - G 76 -2.2 -5.42259 | opp_overlap 1567502, overlap 1567501 1567502 CTATTCCTAAAAAAA TATCATCAACGG AAA CCGCTAATGCTT GTGCAATACCTTTTA M28_Spy1567 1567855 - 1568229 + | transcriptional regulator M28_Spy1568 1568422 - 1568721 + | hypothetical protein TERM 1983 1568733 - 1568758 + T 100 -12.7 -5.66684 | opp_overlap 1568733 CTAAAAAAACAAAAA CTAGCTTGAGA AGGA TCTCAGGCTAG TTTTTTTATGAGTTA TERM 1984 1568758 - 1568733 - T 100 -10.5 -5.86609 | opp_overlap 1568733 CTAAAAAAACAAAAA CTAGCTTGAGA AGGA TCTCAGGCTAG TTTTTTTATGAGTTA M28_Spy1569 1569512 - 1568778 - | MerR family transcriptional regulator TERM 1985 1569062 - 1569050 - G 71 -4.1 -4.87665 | CTCCACCCACAAAAA GTAGA GTT TCCAC TGTCAAACAGACAAT dnaQ 1570285 - 1569659 - | DNA polymerase III subunit epsilon TERM 1986 1570277 - 1570263 - G 86 -7.8 -5.00616 | opp_overlap 1570263 TTTTCCTCCAAAAAA GACCCT GAT AGGGCC TTCGTCATTTTTTGT M28_Spy1571 1570876 - 1570295 - | putative cytoplasmic protein M28_Spy1572 1571520 - 1571029 - | hypothetical protein M28_Spy1573 1571756 - 1571517 - | ABC transporter ATP-binding protein M28_Spy1574 1572138 - 1571803 - | ABC transporter ATP-binding protein TERM 1987 1571917 - 1571928 + g 70 -3 -5.08255 | opp_overlap 1571917, overlap 1571912 GATAATATTTTTAAA GAAA GTTC TTTC TTTTATTTTCCAAAT M28_Spy1575 1574123 - 1572135 - | ABC transporter permease TERM 1988 1573946 - 1573956 + g 71 -4 -4.87786 | TTTTCGTTTTTGATA GATT ACT AATC TTTTTGTAAACTTCG TERM 1989 1574141 - 1574163 + r 81 -9.2 -3.77666 | opp_overlap 1574141 TCCTATATTATAAAA GACCCTATAA TAA TTATTGGGTC TTTAGCTTGCATATA TERM 1990 1574163 - 1574141 - R 93 -9.2 -4.50976 | opp_overlap 1574141 TCCTATATTATAAAA GACCCTATAA TAA TTATTGGGTC TTTAGCTTGCATATA M28_Spy1576 1574500 - 1574225 - | hypothetical protein TERM 1991 1574505 - 1574488 - G 70 -8.5 -3.27766 | opp_overlap 1574488 1574486, overlap 1574477 AAGAGCTTACAGCAA GCAAAGT TATC ACTTTGC TATTAAATCTTTTTT TERM 1992 1574971 - 1574994 + G 79 -5.2 -5.03405 | CTTGATGACCTTATG GCAGGCATTC CTGG GAATGGCCGC TTTTTATATAGTGTT TERM 1993 1575742 - 1575714 - g 76 -4.6 -5.093 | TCCAAAACAAGAAAA GGAATTGCTTGA TAAAC TCAAACACCTCC AGATACCCATTACAG M28_Spy1577 1574785 - 1575954 + | NAD(FAD)-utilizing dehydrogenase TERM 1994 1575987 - 1575963 - T 88 -7.2 -5.1287 | opp_overlap 1575963 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT TERM 1995 1575963 - 1575987 + T 100 -9.4 -4.70266 | opp_overlap 1575963 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT TERM 1996 1575995 - 1576009 + T 86 -2.8 -5.83211 | TAGTAGGCTTTTTAA CTCCTA TTA TATGAG TTTTTTGTTTTAGTC deoC 1576720 - 1576049 - | deoxyribose-phosphate aldolase nupC 1577964 - 1576750 - | nucleoside permease udp 1578752 - 1577973 - | uridine phosphorylase crgR 1578992 - 1579750 + | GntR family transcriptional regulator TERM 1997 1579916 - 1579884 - f 85 -12.2 -2.98729 | overlap 1579893 TATAATGATTATATA TCCACTTAACCAGT TAAAT ACCAGTTAAGTGGA TTCAGAGCGCTGATA rpsN 1579971 - 1580240 + | 30S ribosomal protein S14 TERM 1998 1580328 - 1580355 + T 100 -14.3 -5.00616 | opp_overlap 1580331 TACTTATCATCATGA CAACCCGGTAT GCCAAG ATACCGGGTTG TTTTTTCAAAGGGAG TERM 1999 1580352 - 1580331 - T 85 -10.2 -3.45023 | opp_overlap 1580328 TTATCATCATGACAA CCCGGTAT GCCAAG ATACCGGG TTGTTTTTTCAAAGG M28_Spy1583 1581439 - 1580411 - | O-sialoglycoprotein endopeptidase M28_Spy1584 1581884 - 1581429 - | ribosomal-protein-alanine acetyltransferase M28_Spy1585 1582587 - 1581856 - | glycoprotease family protein M28_Spy1586 1582808 - 1583068 + | hypothetical protein TERM 2000 1583189 - 1583232 + G 79 -9.8 -3.63341 | gap 1, opp_overlap 1583199, overlap 1583199 CATTATCGTTGATGC CGGTATCAAATTCCCAGAAGA TGA TCTTTTGGGAA-TTGATTACG TTATTCCAGACTATT TERM 2001 1583223 - 1583199 - g 80 -10.1 -3.72893 | opp_overlap 1583189 1583199 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 2002 1583199 - 1583223 + G 87 -12.3 -3.43049 | opp_overlap 1583199, overlap 1583189 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 2003 1584645 - 1584632 - g 79 -6.7 -4.61482 | TGCTTTAAAAAATAA GGATG CTAG CATCC AATCAGTTAACGGTG M28_Spy1587 1583070 - 1584752 + | Zn-dependent hydrolase TERM 2004 1584876 - 1584822 - T 75 -8.8 -3.50393 | opp_overlap 1584830 1584837 1584869, overlap 1584823 1584825 1584837 TTCTAGTTCAGATAA TTATCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTCTAT AATGGAAAATCAATT TERM 2005 1584875 - 1584823 - T 86 -12.3 -2.70022 | opp_overlap 1584830 1584837 1584869, overlap 1584822 1584825 1584837 TCTAGTTCAGATAAT TATCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTCTA TAATGGAAAATCAAT TERM 2006 1584873 - 1584825 - T 79 -10.5 -2.89298 | opp_overlap 1584830 1584837 1584869, overlap 1584823 1584822 1584837 TAGTTCAGATAATTA TCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTC TATAATGGAAAATCA TERM 2007 1584830 - 1584868 + T 100 -12 -4.57353 | opp_overlap 1584825 1584823 1584822 1584837, overlap 1584837 CAGATAATTATCAAA CTAAAAACCAGTCC TCATAGAACAT GGACTGGTTTTTAG TTTTCTATAATGGAA TERM 2008 1584837 - 1584861 + T 76 -4.3 -5.15526 | opp_overlap 1584825 1584823 1584822 1584837, overlap 1584830 TTATCAAACTAAAAA CCAGTCC TCATAGAACAT GGACTGG TTTTTAGTTTTCTAT TERM 2009 1584861 - 1584837 - T 88 -7.1 -5.01811 | opp_overlap 1584837 1584830, overlap 1584825 1584823 1584822 TTATCAAACTAAAAA CCAGTCCTCAT AGA ACATGGACTGG TTTTTAGTTTTCTAT TERM 2010 1584970 - 1584948 - T 100 -10.6 -4.19258 | ATAGCTCATCCAAAA GACCCACTCA ACT TGAGCAGGTC CTGATAAGTCTAATA glnA 1586326 - 1584980 - | glutamine synthetase TERM 2011 1586180 - 1586201 + g 80 -10.3 -3.63298 | opp_overlap 1586173 1586177, overlap 1586178 ATCAAACATAACCTT GTTAGACAA TACT TTGTCTAAC TGTTCTTTCGTTGCA M28_Spy1589 1586735 - 1586364 - | MerR family transcriptional regulator M28_Spy1590 1587353 - 1586802 - | hypothetical protein TERM 2012 1586980 - 1586966 - G 82 -7.8 -4.56133 | GTGTAATAATCAAAA GAGCAG CCA CTGCCC CAATAATACCTGATT TERM 2013 1587591 - 1587574 - R 93 -7.7 -5.65513 | opp_overlap 1587574 1587573 GATCAACTAAAAAAA GACATGC ATCA GCATGCC CTTTACTATATATTA pgk 1588812 - 1587616 - | phosphoglycerate kinase lppC 1589859 - 1589005 - | acid phosphatase M28_Spy1593 1590978 - 1590133 - | membrane protease family protein TERM 2014 1591004 - 1591024 + r 72 -8.4 -3.34232 | opp_overlap 1591007, overlap 1591007 CCTTGTCATATCTTA GAACTGAA CCGTT TTCAGTTC TTGACTTATTGTTAT TERM 2015 1591098 - 1591113 + r 71 -3.2 -5.03145 | TAACCATTAGCTTTG TGATGG ATTA CCCTCA TTTTTTAGGGGCTTA TERM 2016 1591193 - 1591172 - R 88 -7.3 -5.09685 | opp_overlap 1591172 CAATATAGACAAAAA GAGTCAGAC CTTT GCCTAACTC CTCTTTTTTTATTGT M28_Spy1594 1592879 - 1591215 - | kinase asp 1593244 - 1592879 - | putative alkaline-shock protein TERM 2017 1593399 - 1593365 - R 71 -8.9 -3.08696 | gap 1, opp_overlap 1593364 1593374 1593397, overlap 1593364 ATGGATAGAAATAAG CTAATAAAAA-AAGCC CTAA GGCTTATTTCTATTAG ATGCGTTCTACTTTA rpmB 1593584 - 1593396 - | 50S ribosomal protein L28 TERM 2018 1593929 - 1593942 + r 73 -8.1 -3.69902 | opp_overlap 1593929 1593930, overlap 1593930 ATTGTATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTATTTAAT TERM 2019 1593942 - 1593929 - R 90 -8.1 -5.09225 | opp_overlap 1593929 1593930, overlap 1593930 ATTGTATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTATTTAAT TERM 2020 1593943 - 1593965 + r 77 -8.6 -3.68962 | opp_overlap 1593930, overlap 1593930 AGCCCTCAAGAGGGC TTTAGGGTAT TTA ATACTCTAAA TTATGCTTTGTTAGC fba 1594847 - 1593966 - | fructose-bisphosphate aldolase TERM 2021 1595045 - 1595023 - R 100 -9.2 -5.95166 | opp_overlap 1595023 TTTAACCAAAAAAAA GAGACGAATC AAT GATTCACCTC TTACATTATGCGGAG M28_Spy1598 1596119 - 1595193 - | alpha/beta hydrolase TERM 2022 1596089 - 1596077 - G 71 -6.3 -4.30809 | TAAGAGTTATCAAAA GGAAT AGA ATTCC TAAATACTTTGCTAT pyrG 1597891 - 1596287 - | CTP synthetase TERM 2023 1598050 - 1598026 - R 76 -2.8 -5.54907 | overlap 1598028 TCTAGAAAACAAAAA TAGCCCCCTA TTAAC TAGAGAGCTT TTGCCTGACCTCATA rpoE 1598723 - 1598148 - | DNA-directed RNA polymerase subunit delta TERM 2024 1598908 - 1598882 - R 93 -8.1 -5.69262 | opp_overlap 1598882 TTAGAAAAAGAAAAA CCAGACTAGAA AGACG TTCTAATCCGG CTTGTACGTTTTGTT tig 1600305 - 1598935 - | trigger factor M28_Spy1602 1600539 - 1601384 + | mechanosensitive ion channel TERM 2025 1601400 - 1601447 + T 87 -10.3 -3.71649 | gap 1, opp_overlap 1601400 1601401, overlap 1601401 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 2026 1601447 - 1601400 - T 100 -10.3 -5.11033 | gap 1, opp_overlap 1601400 1601401, overlap 1601401 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 2027 1601401 - 1601446 + T 83 -11.6 -2.82668 | gap 1, opp_overlap 1601400 1601401, overlap 1601400 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG TERM 2028 1601446 - 1601401 - T 100 -13.8 -3.65535 | gap 1, opp_overlap 1601401 1601400, overlap 1601400 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG M28_Spy1603 1602009 - 1601449 - | hypothetical protein M28_Spy1604 1602493 - 1602023 - | hypothetical protein thiD 1603247 - 1602483 - | phosphomethylpyrimidine kinase TERM 2029 1602962 - 1602950 - G 70 -9.1 -3.11922 | opp_overlap 1602952, overlap 1602947 1602948 CAGGATCTAAAACCA CTGGG ATT CCCAG ATGCCCCTTTATAAA truA 1603986 - 1603237 - | tRNA pseudouridine synthase A comX.2 1604752 - 1604171 - | competence-specific sigma factor TERM 2030 1604711 - 1604736 + g 100 -10.5 -5.32944 | opp_overlap 1604712, overlap 1604712 GAGAACCACAAAAAA ACAACAGGACA CTAA TGTCCTGTTGC TTTTTTCATTATGCA TERM 2031 1604712 - 1604735 + g 95 -14 -3.78682 | opp_overlap 1604712, overlap 1604711 AGAACCACAAAAAAA CAACAGGACA CTAA TGTCCTGTTG CTTTTTTCATTATGC TERM 2032 1604735 - 1604712 - G 100 -14 -5.73339 | opp_overlap 1604712 1604711 AGAACCACAAAAAAA CAACAGGACA CTAA TGTCCTGTTG CTTTTTTCATTATGC TERM 2033 1604892 - 1604875 - H 89 -6.3 -5.61824 | opp_overlap 1604875, overlap 1604866 TAAAATGCAAAAAAA GATAGGA CGCT TCCTACC TCTCTCTACTCCGCC TERM 2034 1607104 - 1607137 + H 71 -8.9 -3.03412 | overlap 1607098 1607103 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 2035 1607796 - 1607815 + H 91 -12.2 -3.62096 | opp_overlap 1607795 1607794 CGCAGTCCTACAACC CCGAAGTG TAAA CACTTCGG TTTGCCCTCCTGCCG TERM 2036 1610079 - 1610093 + H 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC M28_Spy1608 1610144 - 1610278 + | hypothetical protein M28_Spy1609 1611584 - 1610442 - | glycerate kinase TERM 2037 1610584 - 1610564 - G 70 -2.5 -5.08824 | overlap 1610540 GTTGTATTGAAAAAA CAGCCAAAA AGT CTTCTGCTG CTAGTCCTGTCTCAA TERM 2038 1610866 - 1610882 + g 85 -6.7 -5.01732 | opp_overlap 1610865, overlap 1610869 1610870 GTCTGTAAATCAATG GTTTTTT GGT AAAAAAC TTTTTTAGCAAAGTT TERM 2039 1612557 - 1612531 - g 76 -4.4 -5.0809 | opp_overlap 1612534, overlap 1612525 1612534 AACAAACCACAAAAA GATCTCTTTGCC TTT GCCAAAGAAGTC CTATCTATCCCTCGT TERM 2040 1614753 - 1614742 - g 76 -2.2 -5.38054 | overlap 1614747 GCCTATAAAGAAAAA CAAG GTGA CTCG GCCATGAATAAACTC hsdR 1611865 - 1614843 + | type I restriction-modification system restriction subunit TERM 2041 1615826 - 1615799 - g 70 -9.4 -2.60988 | opp_overlap 1615797, overlap 1615796 AAGGTAATGAATTTA TCTTTCAAATAT TAAA ATACTTGAAAGA AATTGGTTATTGGAA hsdS 1614856 - 1616043 + | type I restriction-modification system specificity subunit hsdM 1616056 - 1617636 + | type I restriction-modification system methylation subunit TERM 2042 1617644 - 1617682 + TF 77 -9 -3.6715 | opp_overlap 1617649, overlap 1617649 1617651 GAAACTAAAAGACCA AAAAACACCACAGTAG ATGATTA CTACTGTGGCGTTTTA TTTAAAATTGGGTAG TERM 2043 1617649 - 1617677 + TF 95 -8.9 -4.90525 | opp_overlap 1617649, overlap 1617644 1617651 TAAAAGACCAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 2044 1617677 - 1617649 - Tf 100 -11.1 -5.36314 | opp_overlap 1617649 1617644 1617651 TAAAAGACCAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 2045 1617651 - 1617675 + TF 75 -10.1 -2.70854 | opp_overlap 1617649, overlap 1617649 1617644 AAAGACCAAAAAACA CCACAGTAG ATGATTA CTACTGTGG CGTTTTATTTAAAAT M28_Spy1614 1618037 - 1617846 - | hypothetical protein TERM 2046 1617929 - 1617954 + gF 75 -8.5 -3.34233 | TAAAGTAGTTCCAAT CGTTGATATAT AAGC ATATATTAACG TTCTGGGAGTTGTGA M28_Spy1613 1618012 - 1618131 + | hypothetical protein TERM 2047 1618171 - 1618149 - TR 87 -11.4 -3.17714 | opp_overlap 1618149 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA TERM 2048 1618149 - 1618171 + Tr 85 -9.2 -4.04174 | opp_overlap 1618149 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA salR 1618793 - 1618188 - | transcriptional regulatory protein M28_Spy1616 1620336 - 1618774 - | sensory transduction protein kinase salY 1622283 - 1620376 - | ABC transporter permease protein TERM 2049 1622114 - 1622100 - G 78 -2.8 -5.51402 | ATACAGTCAAAAAAA CTAATG ACC CGTTAG CAATAACTAGAGCTT M28_Spy1618 1623022 - 1622285 - | ABC transporter ATP-binding protein TERM 2050 1622680 - 1622664 - G 70 -8.1 -3.767 | opp_overlap 1622674 TAGTTATTTATCAAA TCATCAA TTT TTGATGA ATCAACATTTTTTAA salX 1623498 - 1623019 - | lantibiotic transport ATP-binding protein salB 1625179 - 1623554 - | serine (threonine) dehydratase TERM 2051 1625229 - 1625203 - R 100 -12.4 -4.68994 | opp_overlap 1625202 1625203 ACCACTACTTAAAAA TCCTGCCTAGAC TAA GTCTAAACAGGA AATTTTAGTCTGCTT salA 1625416 - 1625261 - | lantibiotic salivaricin A lacG 1627325 - 1625919 - | 6-phospho-beta-galactosidase TERM 2052 1627386 - 1627361 - R 93 -10.5 -3.9712 | TCATTTCACTATAAA GGAAGATTGAG TACC CCCAACCTTCC CTAGCGACATATTAT lacE 1629095 - 1627398 - | PTS system, lactose-specific IIBC component lacF 1629412 - 1629095 - | PTS system, lactose-specific IIA component lacD.2 1630419 - 1629436 - | tagatose 1,6-diphosphate aldolase lacC.2 1631351 - 1630422 - | tagatose-6-phosphate kinase lacB.2 1631912 - 1631397 - | galactose-6-phosphate isomerase subunit LacB TERM 2053 1631467 - 1631491 + g 86 -7.1 -5.10497 | GGGTTGTTTTGATCT TGGCTAGCATG TTG CAAGCTATCCA TTTTTTCAATCCATT lacA.2 1632375 - 1631947 - | galactose-6-phosphate isomerase subunit LacA TERM 2054 1632511 - 1632558 + H 95 -6.8 -5.85011 | gap 1, opp_overlap 1632511 1632515 1632518 1632542, overlap 1632515 1632518 1632520 1632533 CACCAAACATAAAAG TCAACATTTTTTTGTTTATTTTT ATA AAAAATAAAC-AAAATATGTTTA TTTTTTTCATTTTTA TERM 2055 1632515 - 1632554 + H 89 -7.6 -5.25976 | gap 1, opp_overlap 1632511 1632515 1632518 1632542, overlap 1632511 1632518 1632520 1632533 AAACATAAAAGTCAA CATTTTTTTGTTTATTTTT ATA AAAAATAAAC-AAAATATG TTTATTTTTTTCATT TERM 2056 1632552 - 1632518 - H 77 -10.4 -2.55657 | opp_overlap 1632515 1632511 1632518 1632520 1632533, overlap 1632515 1632511 1632542 CATAAAAGTCAACAT TTTTTTGTTTATTTTT ATA AAAAATAAACAAAATA TGTTTATTTTTTTCA TERM 2057 1632518 - 1632552 + H 100 -10.4 -4.21073 | opp_overlap 1632518 1632515 1632511 1632542, overlap 1632515 1632511 1632520 1632533 CATAAAAGTCAACAT TTTTTTGTTTATTTTT ATA AAAAATAAACAAAATA TGTTTATTTTTTTCA TERM 2058 1632520 - 1632550 + H 95 -13 -3.65523 | opp_overlap 1632518 1632515 1632511 1632542, overlap 1632518 1632515 1632511 1632533 TAAAAGTCAACATTT TTTTGTTTATTTTT ATA AAAAATAAACAAAA TATGTTTATTTTTTT TERM 2059 1632558 - 1632542 - H 76 -3.8 -5.252 | opp_overlap 1632520 1632518 1632515 1632511 1632533, overlap 1632518 1632515 1632511 TATTTTTATAAAAAA TAAACA AAATA TGTTTA TTTTTTTCATTTTTA lacR.2 1632821 - 1633594 + | lactose phosphotransferase system repressor TERM 2060 1633882 - 1633925 + F 84 -11.3 -3.06815 | gap 1, opp_overlap 1633882 1633880 1633878 TTAGACATCAACATA CCTCTTAAGTAGATTTTGGT TCGTT ACCATG-TCTACTTAAGAGG TGTCTTCAAAGCGCT TERM 2061 1633925 - 1633882 - f 77 -9.1 -3.17529 | gap 1, opp_overlap 1633882, overlap 1633880 1633878 TTAGACATCAACATA CCTCTTAAGTAGATTTTGGT TCGTT ACCATG-TCTACTTAAGAGG TGTCTTCAAAGCGCT TERM 2062 1633947 - 1633970 + F 78 -7.6 -4.1585 | opp_overlap 1633937 1633947 CAAAGCGCTTTAAAA CGTTGATATA ACAG TATATTAACG TTTTGAGAATTGTGA M28_Spy1630 1634294 - 1634530 + | DNA-damage-inducible protein J TERM 2063 1634676 - 1634661 - g 70 -2.5 -5.04597 | opp_overlap 1634672, overlap 1634655 AGCGACATAGAAAAA CTCGA GGTTTT CCGAG AAGTTGGTTTTGATG M28_Spy1631 1634520 - 1634855 + | putative cytoplasmic protein TERM 2064 1634866 - 1634887 + F 100 -10.9 -5.18357 | opp_overlap 1634861 1634866 AATAACACATTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA TERM 2065 1634887 - 1634866 - f 89 -8.7 -4.45723 | opp_overlap 1634866, overlap 1634861 AATAACACATTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA M28_Spy1632 1635136 - 1635477 + | DNA integration/recombination/invertion protein TERM 2066 1635675 - 1635655 - f 90 -8.3 -5.2853 | opp_overlap 1635655 CAGCCAAAAAGAAAA GGCACAACT AGC AGTTGCACC TCTTTCAATTGAGTC M28_Spy1633 1635838 - 1635987 + | DNA integration/recombination/invertion protein TERM 2067 1636067 - 1636093 + T 72 -8 -3.47941 | opp_overlap 1636067 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG TERM 2068 1636093 - 1636067 - T 100 -12.4 -5.77632 | opp_overlap 1636067 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG rpsI 1636512 - 1636120 - | 30S ribosomal protein S9 TERM 2069 1636396 - 1636413 + g 82 -4.2 -5.45652 | TAGGTCAGCATGTGG GATGTA TTCTTC TACATC TTTTTTGTTAACAGT rplM 1636979 - 1636533 - | 50S ribosomal protein L13 TERM 2070 1637177 - 1637191 + r 76 -10 -2.77523 | opp_overlap 1637175, overlap 1637174 CGTTTTTGAGGAATG GCAGAG CTG CTCTGC TGATGTTAATGGGAA M28_Spy1636 1637403 - 1637197 - | Cro/CI family transcriptional regulator M28_Spy1637 1638131 - 1637400 - | hypothetical protein TERM 2071 1638223 - 1638200 - R 90 -8.2 -5.2189 | opp_overlap 1638200 1638211 TTAAGCAGCAAAAAA GGATTGAGGA TTTC TCTTCAATCC TTATAAGGGATTAAC TERM 2072 1638200 - 1638223 + r 83 -10.4 -3.31322 | opp_overlap 1638200, overlap 1638211 TTAAGCAGCAAAAAA GGATTGAGGA TTTC TCTTCAATCC TTATAAGGGATTAAC M28_Spy1638 1639094 - 1638234 - | DegV family protein TERM 2073 1639178 - 1639164 - R 83 -4.9 -5.52986 | ATTTTATCAAAAAAA CCCGC ACTTG GCGAG TCGTAATTCTCATTA M28_Spy1639 1639709 - 1639191 - | putative cytoplasmic protein TERM 2074 1639653 - 1639672 + g 79 -10.8 -3.22951 | opp_overlap 1639641, overlap 1639652 AAACAACTGACGGGT TGATTGCC AAAA GGCAATCA TATTATACCCATCTA M28_Spy1640 1640486 - 1639713 - | 23S rRNA methyltransferase M28_Spy1641 1641303 - 1640506 - | hypothetical protein TERM 2075 1641501 - 1641478 - R 89 -9 -4.29738 | gap 1, opp_overlap 1641481 TCAGACCTATGAAAA TAAGAGTCTCC TAG GG-GACTCTTA TGAGGATATCAATTG M28_Spy1642 1641912 - 1641499 - | hypothetical protein cysS 1643248 - 1641905 - | cysteinyl-tRNA synthetase M28_Spy1644 1643506 - 1643276 - | hypothetical protein TERM 2076 1643548 - 1643530 - R 100 -11.8 -4.90266 | TTTATTAACGAAAAA CCTTCACA ACC TGTGAAGG CTTCAGAAAGTAGAC M28_Spy1645 1643791 - 1643519 - | putative cytoplasmic protein cysE 1644566 - 1643985 - | serine acetyltransferase M28_Spy1647 1645327 - 1644575 - | hypothetical protein M28_Spy1648 1647452 - 1645320 - | polynucleotide phosphorylase/polyadenylase TERM 2077 1647716 - 1647699 - R 91 -4.1 -5.77856 | opp_overlap 1647699 AACAAAGCAAAAAAA GCAGG TTGGTATG CCTGC TTTCGTCTCCTAATA M28_Spy1649 1648463 - 1647732 - | putative translaldolase ulaA 1649852 - 1648473 - | ascorbate-specific PTS system enzyme IIC M28_Spy1651 1650184 - 1649879 - | PTS system, IIB component M28_Spy1652 1652318 - 1650156 - | PTS system, mannitol (cryptic)-specific IIA component TERM 2078 1652374 - 1652387 + r 84 -6.7 -5.15167 | AAAATAGGCAAATCT GGGAA TTGA TTCCC TTTTTCTTCATGATA TERM 2079 1652403 - 1652440 + r 84 -11.5 -3.07113 | opp_overlap 1652403 1652406 1652411, overlap 1652406 TTTTTCTTCATGATA CAACAAAAGATACCTCA TCAC TGAGATACCTTTTGTTG TTAAATAAAATCATC TERM 2080 1652440 - 1652403 - R 100 -15.9 -2.78384 | opp_overlap 1652403 1652406, overlap 1652406 1652411 TTTTTCTTCATGATA CAACAAAAGATACCTCA TCAC TGAGATACCTTTTGTTG TTAAATAAAATCATC TERM 2081 1652406 - 1652437 + r 71 -7.4 -3.68073 | opp_overlap 1652406 1652403 1652411, overlap 1652403 TTCTTCATGATACAA CAAAAGATACCTCA TCAC TGAGATACCTTTTG TTGTTAAATAAAATC TERM 2082 1652437 - 1652406 - R 91 -11.8 -3.54475 | opp_overlap 1652403 1652406, overlap 1652403 1652411 TTCTTCATGATACAA CAAAAGATACCTCA TCAC TGAGATACCTTTTG TTGTTAAATAAAATC TERM 2083 1652432 - 1652411 - R 81 -5.9 -4.85918 | opp_overlap 1652406 1652403, overlap 1652406 1652403 CATGATACAACAAAA GATACCTCA TCAC TGAGATACC TTTTGTTGTTAAATA M28_Spy1653 1652585 - 1652454 - | hypothetical protein TERM 2084 1652532 - 1652553 + g 75 -5.7 -4.66833 | opp_overlap 1652532, overlap 1652534 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA TERM 2085 1652553 - 1652532 - G 91 -7.9 -5.18355 | opp_overlap 1652532 1652534 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA rpsO 1652838 - 1652569 - | 30S ribosomal protein S15 TERM 2086 1652675 - 1652692 + g 70 -5.5 -4.38219 | ATTTTTTTCATCAAT CCACGGT AAGT AGCGTGG TCTTTTTTGTGTTCT M28_Spy1655 1653151 - 1652996 - | hypothetical protein TERM 2087 1653023 - 1653036 + g 72 -4.5 -4.66163 | opp_overlap 1653016 1653023 ACTAGCAAGGCCAAA TAGCC AAGA GGCTG TTTTTAAATCAGAAT M28_Spy1656 1653277 - 1653534 + | putative transcriptional regulator TERM 2088 1654254 - 1654235 - g 74 -5 -4.67904 | GATCAATGCTAAAAA CCCCTTTG AAAC CAAAGAAG AGCTCTTGATTTTAG def 1653660 - 1654274 + | peptide deformylase TERM 2089 1654293 - 1654282 - T 79 -3.6 -5.5353 | opp_overlap 1654275, overlap 1654275 TAGACTAACAAAAAA GGCC CTTT AGCC TTTTTTTGTTAGTCT M28_Spy1658 1654849 - 1654307 - | oxidoreductase M28_Spy1659 1655438 - 1654980 - | MarR family transcriptional regulator TERM 2090 1655248 - 1655227 - G 89 -10.3 -4.1673 | overlap 1655230 GAAGTCGCTAACAAA GAATCAATC AAGT GATTGATTC GCATACAGCCTTTAG TERM 2091 1655245 - 1655230 - G 71 -6.2 -4.20367 | overlap 1655227 GTCGCTAACAAAGAA TCAATC AAGT GATTGA TTCGCATACAGCCTT polC 1659915 - 1655518 - | DNA polymerase III PolC TERM 2092 1656087 - 1656109 + g 74 -6.3 -4.4009 | opp_overlap 1656090 TTTTTCCACACGATT CAATGTACC AGTCG GGCACATTG TTTTCTCGCATGGCA TERM 2093 1658433 - 1658413 - G 71 -6.9 -4.08945 | ACTATCTTTGCAAAA GTCCTGAAA AGC TTTTAGGAC GGTAACCAATGGCTT TERM 2094 1660156 - 1660132 - R 72 -5 -4.80882 | gap 1 AGTTCACAGCAAAAA GAGGCCACTCT AAAC AG-GCAGCCTC TTCATTTCTTTTTTA proS 1662025 - 1660169 - | prolyl-tRNA synthetase TERM 2095 1662173 - 1662140 - R 91 -12.6 -3.15544 | opp_overlap 1662140 TTTCATTTTGAGTAA GACCTCAACCCT TGCAAATCTT AGGGTTGAGGTC TTTTTCGATCTTTAA TERM 2096 1662140 - 1662173 + r 100 -12.6 -4.77986 | opp_overlap 1662140 TTTCATTTTGAGTAA GACCTCAACCCT TGCAAATCTT AGGGTTGAGGTC TTTTTCGATCTTTAA M28_Spy1662 1663482 - 1662223 - | pheromone-processing membrane metalloprotease TERM 2097 1663435 - 1663418 - G 70 -5.6 -4.48449 | TTAGCAAAATAGAAA TGTCCA AATTCA TGGACA ATCACTAAAATACCA cdsA 1664349 - 1663555 - | phosphatidate cytidylyltransferase TERM 2098 1664218 - 1664198 - G 77 -7.7 -4.16146 | opp_overlap 1664197 1664198 AAAACACCTTCAAAA GAAAAGACT TCT AATCTTTTC ATTTTCAGTAATTCT uppS 1665111 - 1664362 - | undecaprenyl pyrophosphate synthetase TERM 2099 1665057 - 1665078 + g 100 -4.4 -5.9003 | opp_overlap 1665056, overlap 1665059 1665073 TGATAATTCCAATAT GCTTTGGG ATACTC CCCAAAAC TTTTTTTGTTGATTT TERM 2100 1665160 - 1665175 + r 79 -4.6 -5.31456 | TATTTTATCATATTT CACGCC TTTT GGCTTG TTTTTTATCAATTAG TERM 2101 1665319 - 1665298 - R 89 -3.1 -5.83211 | gap 1, opp_overlap 1665298, overlap 1665291 GATCAAAACAAAAAA GTTTGGCATA TTT CAT-CCAAAC TTTCCCCGCCTTAAT TERM 2102 1665346 - 1665364 + r 71 -8.8 -2.99545 | overlap 1665343 TAATGGCTTTCAATG GCACTGTC AGT GTCAGTGC TATCTACTGTCTCAA yajC 1665695 - 1665330 - | preprotein translocase subunit YajC TERM 2103 1665606 - 1665617 + g 72 -3.6 -5.08831 | GTTTAACTGGTTTTG GCGT TCTT GCGC TTGTTTTTTTTGTTG M28_Spy1666 1666185 - 1665811 - | thioredoxin pulA 1669824 - 1666300 - | pullulanase TERM 2104 1668170 - 1668181 + gH 77 -5.8 -4.70626 | opp_overlap 1668168 1668170 GCTTCATAGATAATA GCGT CTTC ACGC TTTTTAAAGTTGTTA TERM 2105 1668249 - 1668260 + gH 72 -5.8 -4.371 | overlap 1668248 TTGGATCAATAAAGG CAGC TTTT GCTG TTTTGATGTCATCAG TERM 2106 1669971 - 1669931 - gR 87 -8.4 -4.63928 | gap 1, opp_overlap 1669936 1669938 1669944, overlap 1669932 1669936 ATAGGATCTCAAAAA TCAAACAGCCAAAACGAGT TTCC ACTCGCTT-GGCTGTTGGG TAAACTCAAATCACA TERM 2107 1669970 - 1669932 - gR 90 -11.9 -3.37634 | gap 1, opp_overlap 1669936 1669938 1669944, overlap 1669931 1669936 TAGGATCTCAAAAAT CAAACAGCCAAAACGAGT TTCC ACTCGCTT-GGCTGTTGG GTAAACTCAAATCAC TERM 2108 1669936 - 1669966 + Gr 74 -9.1 -3.06796 | gap 1, opp_overlap 1669932 1669931 1669936, overlap 1669938 1669944 ATCTCAAAAATCAAA CAGCCAAAACGAGT TTCC ACTCGCTT-GGCTG TTGGGTAAACTCAAA TERM 2109 1669966 - 1669936 - gR 100 -11.3 -4.32649 | gap 1, opp_overlap 1669936 1669938 1669944, overlap 1669932 1669931 ATCTCAAAAATCAAA CAGCCAAAACGAGT TTCC ACTCGCTT-GGCTG TTGGGTAAACTCAAA M28_Spy1667 1669781 - 1670011 + | hypothetical protein dexB 1671629 - 1669995 - | glucan 1,6-alpha-glucosidase TERM 2110 1671722 - 1671690 - R 90 -13.7 -3.00525 | opp_overlap 1671699, overlap 1671693 1671699 TTTGCGCAAATGACA TGATAAAAAGGTTGG AAC CCAACCTTTTTATGA ATATCGCTTACACCT TERM 2111 1671719 - 1671693 - R 100 -15.4 -2.7314 | opp_overlap 1671699, overlap 1671690 1671699 GCGCAAATGACATGA TAAAAAGGTTGG AAC CCAACCTTTTTA TGAATATCGCTTACA TERM 2112 1671713 - 1671699 - R 100 -10 -4.95758 | opp_overlap 1671699, overlap 1671693 1671690 ATGACATGATAAAAA GGTTGG AAC CCAACC TTTTTATGAATATCG TERM 2113 1671699 - 1671713 + r 100 -10 -4.89852 | opp_overlap 1671693 1671690 1671699 ATGACATGATAAAAA GGTTGG AAC CCAACC TTTTTATGAATATCG msmK 1672870 - 1671737 - | multiple sugar transport ATP-binding protein TERM 2114 1673167 - 1673150 - R 79 -5.6 -5.1675 | opp_overlap 1673149 CCAGGCAGCAAAAAA GAAAGC TCTGTG GCTTTC CTAATATTTCAACAA lrp 1674058 - 1673168 - | leucine rich protein TERM 2115 1674633 - 1674617 - g 75 -5.9 -4.67641 | overlap 1674612 AGTCCAAAATCAAAA CCATTTG CTA CAAATAG TAGCGCAATGCCACA ska 1674356 - 1675678 + | streptokinase TERM 2116 1675719 - 1675748 + T 80 -5.1 -5.26918 | opp_overlap 1675719 TAACTGACAAAAAAA GCAAGCAAC ACGCTATCAACA GTTGCTTGC TTTTTTCTAACCTCT TERM 2117 1675748 - 1675719 - T 95 -8.7 -5.66684 | gap 1, opp_overlap 1675719 TAACTGACAAAAAAA GCAAGCAACACGCT ATC AACA-GTTGCTTGC TTTTTTCTAACCTCT M28_Spy1673 1676219 - 1675776 - | D-tyrosyl-tRNA deacylase relA 1678465 - 1676234 - | GTP pyrophosphokinase TERM 2118 1678066 - 1678085 + g 73 -7.2 -4.09739 | gap 1, opp_overlap 1678065 TATCTTTAGACATAG CCATCAGCA TTT TGC-GATGG TTTTCGGCGAGTTGC TERM 2119 1678640 - 1678665 + r 93 -10.5 -3.91905 | opp_overlap 1678640, overlap 1678635 GCTCCCGACCAAAAA TAGAGAGAACC AAGG GGCTCTCTCTA TTATGTTTGCTTATC TERM 2120 1678665 - 1678640 - R 100 -12.7 -4.72272 | opp_overlap 1678640 1678635 GCTCCCGACCAAAAA TAGAGAGAACC AAGG GGCTCTCTCTA TTATGTTTGCTTATC sclA 1680072 - 1678705 - | collagen-like surface protein A TERM 2121 1680706 - 1680736 + G 91 -11.8 -3.81146 | overlap 1680707 GGAGAGTTTATTGCC GCCCATGGCAACGC CCA GCGTTGTCTTGGGA TTATTGGTTCAGGCA TERM 2122 1680707 - 1680735 + G 95 -15.3 -2.88366 | overlap 1680706 GAGAGTTTATTGCCG CCCATGGCAACGC CCA GCGTTGTCTTGGG ATTATTGGTTCAGGC TERM 2123 1680796 - 1680810 + G 73 -8.6 -3.62275 | opp_overlap 1680795 1680792 1680790 ACAGCCAAACAGTAT GCCAAA CGC TTTGGC TTTCCACTGCTAGGT M28_Spy1676 1680454 - 1680936 + | hypothetical protein TERM 2124 1681203 - 1681248 + T 100 -18.6 -3.29273 | opp_overlap 1681207, overlap 1681207 GGTTACTGACATGAC TAAAGAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTCTTTG TGTTCTCCTAATCCC TERM 2125 1681207 - 1681244 + T 100 -17.2 -4.29304 | opp_overlap 1681207, overlap 1681203 ACTGACATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTC TTTGTGTTCTCCTAA TERM 2126 1681244 - 1681207 - T 100 -17.2 -3.82218 | opp_overlap 1681207 1681203 ACTGACATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTC TTTGTGTTCTCCTAA M28_Spy1677 1682169 - 1681330 - | exodeoxyribonuclease III M28_Spy1678 1684417 - 1682231 - | PTS system, glucose-specific IIABC component TERM 2127 1684727 - 1684702 - R 90 -3.9 -5.87996 | opp_overlap 1684702 1684719 1684720 GAAGCAATAAAAAAA GGCCGTTGACA CAAT CGTGAACTGCC TGTTCGTTTCTTTAG TERM 2128 1684755 - 1684776 + r 72 -5.9 -4.2828 | opp_overlap 1684758, overlap 1684758 TAGCCTCTTCTTTCT AAAGTAAGC AGCA GCTTACTTA TTTTGATGCCTGCAA TERM 2129 1684773 - 1684758 - R 71 -7.6 -3.53012 | opp_overlap 1684755 1684758 CCTCTTCTTTCTAAA GTAAGC AGCA GCTTAC TTATTTTGATGCCTG TERM 2130 1684758 - 1684773 + r 78 -7.6 -4.26327 | opp_overlap 1684758, overlap 1684755 CCTCTTCTTTCTAAA GTAAGC AGCA GCTTAC TTATTTTGATGCCTG M28_Spy1679 1685523 - 1684774 - | putative cytoplasmic protein prmA 1686476 - 1685523 - | ribosomal protein L11 methyltransferase M28_Spy1681 1687016 - 1686546 - | hypothetical protein TERM 2131 1686856 - 1686871 + g 70 -3.2 -4.87273 | TCTTGGGTCACTTCG CCACTG TCGT CAATGG TTTTTATGGCCTCTT TERM 2132 1687434 - 1687455 + G 73 -7.3 -4.13767 | opp_overlap 1687433 1687436 CCCATAATGACAGAC TAGGCAACG AGTA CCTTGCCTA TTTTACAGTGCACAA M28_Spy1682 1687211 - 1688974 + | 4-amino-4-deoxychorismate lyase TERM 2133 1689230 - 1689220 - g 79 -5.4 -4.93877 | TTTTACCAAACAAAA CCTA TCT TAGG AGTGTGTCTGGGACA trpG 1689007 - 1689573 + | anthranilate synthase component II M28_Spy1684 1689606 - 1690874 + | recombination factor protein RarA TERM 2134 1691266 - 1691253 - f 82 -5.3 -5.24989 | opp_overlap 1691253 CTATACATGAAAAAA CCTTT GTTT AAAGG CTTTTTTTGCTTGTC M28_Spy1685 1691331 - 1691813 + | acetyltransferase flaR 1691868 - 1692374 + | topology modulation protein TERM 2135 1692415 - 1692394 - f 100 -10.9 -4.78661 | gap 1, opp_overlap 1692396 1692411 AGTGAAAAACTAAAA TAGCCACGGG TAA CCCG-GGCTA TTCAGACTGAAAGCC TERM 2136 1692396 - 1692413 + F 74 -9.1 -3.04144 | gap 1, opp_overlap 1692394, overlap 1692411 TGAAAAACTAAAATA GCCACGGG TAA CCCG-GGC TATTCAGACTGAAAG TERM 2137 1692411 - 1692430 + F 72 -5.8 -4.42464 | gap 1, opp_overlap 1692394 1692428, overlap 1692396 1692428 GCCACGGGTAACCCG GGCTATTCA GAC TGAA-AGCC TTTGTTTAAAGGCTT TERM 2138 1692428 - 1692443 + F 93 -7.6 -5.4148 | opp_overlap 1692428, overlap 1692411 CTATTCAGACTGAAA GCCTTT GTTT AAAGGC TTTTTTGCTTGTTTC TERM 2139 1692443 - 1692428 - f 73 -7.6 -3.71873 | opp_overlap 1692411 1692428 CTATTCAGACTGAAA GCCTTT GTTT AAAGGC TTTTTTGCTTGTTTC smeZ 1692623 - 1693324 + | mitogenic exotoxin Z M28_Spy1688 1693760 - 1693650 - | putative cytoplasmic protein dppA 1694048 - 1695682 + | dipeptide-binding protein TERM 2140 1696590 - 1696602 + G 82 -7.7 -4.52047 | overlap 1696586 TTTGGAGGATCTGTT CTTGC TGA GCAAG TTTTCTCATATCCTG dppB 1695795 - 1696772 + | dipeptide transport system permease protein TERM 2141 1696903 - 1696947 + G 79 -10.9 -3.12895 | opp_overlap 1696915, overlap 1696915 TTTACGCAACCTCGC TCCTTCCTTAAACCATCTTTT TGG GACAGATGGTTTAGGTAGGGA TATGTTCGTCAGAAC dppC 1696769 - 1697590 + | dipeptide transport system permease protein dppD 1697602 - 1698405 + | dipeptide transport ATP-binding protein dppE 1698389 - 1699015 + | dipeptide transport ATP-binding protein TERM 2142 1699101 - 1699059 - T 87 -11.6 -3.25538 | opp_overlap 1699061 1699073, overlap 1699061 1699073 TTCCTAACAAAATCA CACCATTAAAAAAACCAGCT TAC AGCTGGTTTTTTTAATTATT TTAATTTTTCCTTAA TERM 2143 1699099 - 1699061 - T 95 -14.2 -3.18634 | opp_overlap 1699061 1699073, overlap 1699059 1699073 CCTAACAAAATCACA CCATTAAAAAAACCAGCT TAC AGCTGGTTTTTTTAATTA TTTTAATTTTTCCTT TERM 2144 1699061 - 1699099 + T 100 -12 -4.81523 | opp_overlap 1699061 1699059 1699073, overlap 1699073 CCTAACAAAATCACA CCATTAAAAAAACCAGCT TAC AGCTGGTTTTTTTAATTA TTTTAATTTTTCCTT TERM 2145 1699087 - 1699073 - T 100 -10 -5.56568 | opp_overlap 1699061 1699073, overlap 1699061 1699059 ACACCATTAAAAAAA CCAGCT TAC AGCTGG TTTTTTTAATTATTT TERM 2146 1699073 - 1699087 + T 100 -10 -5.73672 | opp_overlap 1699073 1699061 1699059, overlap 1699061 ACACCATTAAAAAAA CCAGCT TAC AGCTGG TTTTTTTAATTATTT M28_Spy1694 1699297 - 1699097 - | hypothetical protein TERM 2147 1699266 - 1699276 + g 71 -4 -4.86293 | CCACCAGATGCTTGC TCAA TTT TTGA TTTTAATTTTTCTTC M28_Spy1695 1701943 - 1699466 - | streptococcal histidine triad protein TERM 2148 1700446 - 1700470 + g 75 -2.9 -5.33026 | overlap 1700447 TTGTTACTTTGCGAC TCACTTTTTTA GTG TCAAAGAGTGG TTTTTCTTTGCCTTG TERM 2149 1701186 - 1701202 + g 74 -6.5 -4.44608 | opp_overlap 1701185 GGGCGGTAATCAGAC GGTCTAG CAC CTCGACC TTGTTTTTGACTCCA TERM 2150 1701470 - 1701480 + g 73 -5.4 -4.62669 | overlap 1701475 AGTTCCTTTGGCTAC TTGC TCA GCAA TTTGTTGTTTGGTTC lmb 1702876 - 1701956 - | laminin binding protein TERM 2151 1702019 - 1702043 + g 79 -11.5 -2.65274 | overlap 1702018 TAGATATGTCTTGTT TCCGCTTGGAG CAG CTTCAAGTGGA CTTAATGTCTTTACT TERM 2152 1702509 - 1702534 + g 89 -10.5 -4.14392 | TCCATATCTTCTAGC CCTTTGACTCT ATCT AGTGTCAAAGG TTTTGACGCTTCAAA TERM 2153 1702554 - 1702564 + g 85 -4 -5.53288 | opp_overlap 1702554 GACGCTTCAAACACA TCAA CCT TTGA TTTTTTTAAATTAGG M28_Spy1697 1703070 - 1702954 - | hypothetical protein M28_Spy1698 1704196 - 1703054 - | transposase TERM 2154 1704423 - 1704397 - R 100 -16.8 -5.50499 | opp_overlap 1704387 1704385 1704397 1704399 1704401 1704403 GCACATCTAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2155 1704397 - 1704423 + r 100 -16.8 -3.0792 | opp_overlap 1704397, overlap 1704387 1704385 1704399 1704401 1704403 GCACATCTAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2156 1704399 - 1704421 + r 95 -15 -3.09505 | opp_overlap 1704397, overlap 1704397 1704387 1704385 1704401 1704403 ACATCTAAAAAAATA GAGAGAACCA AAT TGGTTCTCTC TATTAAATAAGCTCT TERM 2157 1704401 - 1704419 + r 85 -11.8 -3.10522 | opp_overlap 1704397, overlap 1704399 1704397 1704387 1704385 1704403 ATCTAAAAAAATAGA GAGAACCA AAT TGGTTCTC TCTATTAAATAAGCT TERM 2158 1704403 - 1704417 + r 71 -8.6 -3.11072 | opp_overlap 1704397, overlap 1704401 1704399 1704397 1704387 1704385 CTAAAAAAATAGAGA GAACCA AAT TGGTTC TCTCTATTAAATAAG M28_Spy1699 1705729 - 1704473 - | cell surface protein TERM 2159 1704633 - 1704658 + g 93 -9.1 -5.24129 | overlap 1704654 GACAATGAGCGATTT GGAGAGTAAGA CTGT TCTTGCTCTTC TTTTTTATCAGAAGA scpA 1709425 - 1705826 - | C5A peptidase precursor TERM 2160 1708566 - 1708591 + g 79 -3.4 -5.40004 | opp_overlap 1708566 1708585, overlap 1708567 1708584 1708585 GTCACAATGCTAACA CCTTTTGATT TGGCAT AATCAAAAGC TTTTTTGGTTTCGTC TERM 2161 1709498 - 1709477 - R 100 -11.7 -4.73613 | opp_overlap 1709481 TGACCATTAAGAAAA GAGAGAATC AAAC GATTCTCTC CTAGCTGTCCATCTG M28_Spy1701 1710617 - 1709760 - | enn protein TERM 2162 1710856 - 1710877 + r 87 -11.7 -3.28497 | opp_overlap 1710856, overlap 1710851 TTAGCCACTCAAAAA GAGAGAATC ATTT GATTCTCTC TTAACTTTAGCATCA TERM 2163 1710877 - 1710856 - R 100 -11.7 -4.67353 | opp_overlap 1710856 1710851 TTAGCCACTCAAAAA GAGAGAATC ATTT GATTCTCTC TTAACTTTAGCATCA M28_Spy1702 1712084 - 1710903 - | emm28 protein TERM 2164 1711124 - 1711136 + g 80 -7.7 -4.43309 | CTTGTTTAGCCAATT GCTCT TTA AGAGC TTTTGCTTCAGCTTC TERM 2165 1712035 - 1712003 - G 79 -8.3 -4.07687 | opp_overlap 1712003 AGCCTGCTCCTAAAA CAGCCACAGCGACCG CTA CGGATGCTGTACCTG TTTTTAATTTTCTAA TERM 2166 1712003 - 1712035 + g 90 -8.3 -5.1417 | opp_overlap 1712003 AGCCTGCTCCTAAAA CAGCCACAGCGACCG CTA CGGATGCTGTACCTG TTTTTAATTTTCTAA TERM 2167 1712262 - 1712246 - R 87 -6.6 -5.41746 | opp_overlap 1712246 AACCGTTCAAAAAAA GAGGAA TGGTC TTCCTC TTTTTTTGTTTTTTT TERM 2168 1712246 - 1712262 + r 100 -6.6 -6.32976 | opp_overlap 1712246 AACCGTTCAAAAAAA GAGGAA TGGTC TTCCTC TTTTTTTGTTTTTTT M28_Spy1703 1713463 - 1712309 - | emm-like protein TERM 2169 1712551 - 1712566 + g 78 -7.6 -4.36411 | CTGCTTTTAGCTTAG CAAGCT CTTC AGCTTG TTTTGCTAATTGCTC TERM 2170 1712578 - 1712590 + g 80 -7.7 -4.43309 | CTTGTTTTGCTAATT GCTCT TTA AGAGC TTTTGCTTCAGCTTC TERM 2171 1713114 - 1713128 + g 78 -2.8 -5.38549 | TTTTCGTTGGTTAAT TTAGCA ATC TGCTCA TTTTTATTATTTAAA TERM 2172 1713394 - 1713414 + g 71 -3.9 -4.84529 | opp_overlap 1713390 1713394, overlap 1713396 AAACTGTCAAAGCTA CTGCTACTG ATG CAGTACCTG TTTTTAACTTTCTCA mga 1715269 - 1713653 - | M protein trans-acting positive regulator (Mga) TERM 2173 1715173 - 1715189 + g 83 -7.3 -4.69326 | GCTCCTTATCTTTAA CTCCGAT AGC ATTGGAG TTTTCTGTTAAATAT TERM 2174 1715402 - 1715387 - H 71 -5.4 -4.46669 | gap 1 ATTAAAACGAAGAAA GCG-GTC AAT GACGCGC AAATCACAACTTAAG TERM 2175 1715510 - 1715522 + H 78 -7.7 -4.13421 | CATTTATGTCATTCA CTGCT TTT AGCAG TTCTTGTGTTTTATT TERM 2176 1715635 - 1715652 + H 75 -8.5 -3.36135 | TTTTCGGTTTTTATC TGTGACA TTAT TGTCACA TTCATTAAAAATTCT M28_Spy1705 1715636 - 1715830 + | hypothetical protein TERM 2177 1715880 - 1715917 + T 71 -8.7 -2.97146 | opp_overlap 1715880, overlap 1715879 CAAAAGACAAAAAAA CTTCCAATAACTTAG CTTGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT TERM 2178 1715917 - 1715880 - T 100 -10.9 -5.9362 | opp_overlap 1715880 1715879 CAAAAGACAAAAAAA CTTCCAATAACTTAG CTTGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT M28_Spy1706 1716187 - 1715936 - | hypothetical protein isp 1717890 - 1716265 - | immunogenic secreted protein TERM 2179 1716836 - 1716849 + g 84 -2.3 -5.72207 | ATCAAGGTGTCCAAT TGGCC TAGT GACCA TTTTTTTGCTTTGAG ihk 1719380 - 1717992 - | two component system histidine kinase irr 1720030 - 1719377 - | two-component response regulator TERM 2180 1719421 - 1719438 + g 89 -5.5 -5.40474 | TGCCTGTAATTGTCT TGAGGGG AATA CCCGTCA TTTTTTTACGAAGGT TERM 2181 1720074 - 1720095 + r 81 -5.9 -4.89729 | gap 1, opp_overlap 1720074, overlap 1720082 GTATCAAGCAGCTAA GGATGACATC AAA GG-GTCATCC TTTTTGACTTTTATG M28_Spy1710 1721341 - 1720124 - | ABC transporter permease protein TERM 2182 1720380 - 1720390 + g 88 -8.2 -5.14965 | ATAAGCTTACGTCTA GCGC CAA GCGC TTTTTTGATCCCAAT M28_Spy1711 1722028 - 1721354 - | ABC transporter ATP-binding protein M28_Spy1712 1723283 - 1722015 - | periplasmic component of efflux system TERM 2183 1722371 - 1722386 + g 70 -3.2 -4.85177 | GGTCATTGCCACCTT GGCC TTGACCTT GGCC TTTTTCCTCTGCTTT TERM 2184 1723588 - 1723551 - R 76 -2.8 -5.45802 | opp_overlap 1723551 1723546 TTTGGAAAACAAAAA TCATATAACCGTTC GCTCACATAA GCACGGGTATATGA TTTTGTACATTTGCG M28_Spy1713 1724001 - 1723717 - | hypothetical protein M28_Spy1714 1724446 - 1724150 - | hypothetical protein TERM 2185 1724569 - 1724530 - R 100 -15.8 -4.85599 | opp_overlap 1724530 1724539, overlap 1724531 1724535 TCTATTTGATAAAAA CCCAACTAAGGCCAGTGC AAAT GCACTGGCCTTAGTGATG CGTTGTGCCTAACAG TERM 2186 1724530 - 1724571 + r 90 -11.8 -3.35679 | gap 2, opp_overlap 1724530 1724531 1724535, overlap 1724539 TCTATTTGATAAAAA CCCA--ACTAAGGCCAGTGC AAAT GCACTGGCCTTAGTGATGCG TTGTGCCTAACAGCG TERM 2187 1724567 - 1724531 - R 100 -16.8 -3.50877 | gap 1, opp_overlap 1724530 1724539, overlap 1724530 1724535 CTATTTGATAAAAAC CCAACTAAGGCCAGTGC AAAT GCACTGGCCTTAGT-GA TGCGTTGTGCCTAAC TERM 2188 1724564 - 1724535 - R 100 -20.9 -3.49077 | opp_overlap 1724530 1724539, overlap 1724531 1724530 TTGATAAAAACCCAA CTAAGGCCAGTGC AAAT GCACTGGCCTTAG TGATGCGTTGTGCCT TERM 2189 1724539 - 1724560 + r 100 -15.9 -3.23538 | opp_overlap 1724535 1724531 1724530, overlap 1724530 TAAAAACCCAACTAA GGCCAGTGC AAAT GCACTGGCC TTAGTGATGCGTTGT sfbX 1726537 - 1724588 - | fibronectin-binding protein TERM 2190 1725378 - 1725388 + g 71 -6.8 -4.11484 | TGAGATGCGTCCGTT GAGG AAT CCTC TTTTGACGGGTTAGC TERM 2191 1726707 - 1726720 + r 74 -5.3 -4.70169 | CTTAGGGTCGCTAGA CTAAC GAGG GTTAG TTTTCTTCGGTGTCG sof 1729797 - 1726717 - | serum opacity factor TERM 2192 1727421 - 1727439 + g 82 -6 -4.98436 | overlap 1727422 1727431 CAGGGTATAGAGGCG TCATTGGT TCT ACCAGTGG TTTTTCTGGTATTGG TERM 2193 1728218 - 1728207 - G 70 -3 -5.0133 | overlap 1728210 CACGTTTGTAAAAAA TACT ATTA AGTA CCTTCATAATTACGT TERM 2194 1728681 - 1728695 + g 81 -2.9 -5.69262 | GTGGGCTAGAGGTCG TAACT TTTTC AGTTA TTTTTGTTTTTGTAA TERM 2195 1730138 - 1730148 + H 70 -4 -4.98255 | AAAGTTTGTGACCTT GATT TTT AATC TTTTTCTCCTTAAAA M28_Spy1717 1730221 - 1730457 + | putative cytoplasmic protein TERM 2196 1730442 - 1730484 + T 71 -8.7 -3.02829 | gap 2, overlap 1730445 CTGGTACTGGGGGTA TAGTCAGATTGGGTAGTTAGA GTT TCTGACT-CCCAATCAG-CTA TGTTAACGGACTATC TERM 2197 1730547 - 1730510 - T 93 -14.4 -2.65264 | opp_overlap 1730510 CTATCACTGATACCA TTCACGCTAAGCCT CATTCTAGCT AGGCTTAGCGTGAA TTTTTTTTGCTGACT TERM 2198 1730510 - 1730547 + T 100 -14.4 -5.86965 | opp_overlap 1730510 CTATCACTGATACCA TTCACGCTAAGCCT CATTCTAGCT AGGCTTAGCGTGAA TTTTTTTTGCTGACT TERM 2199 1730574 - 1730611 + T 93 -10.8 -3.92522 | opp_overlap 1730575 1730576 1730580, overlap 1730564 1730575 1730580 GACTGGTTTTTAAAT ATTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAGC TTTATGACATTGCCC TERM 2200 1730575 - 1730610 + T 93 -14.3 -2.95192 | opp_overlap 1730575 1730576 1730580, overlap 1730564 1730574 1730580 ACTGGTTTTTAAATA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2201 1730610 - 1730575 - T 90 -12.1 -3.34517 | opp_overlap 1730564 1730575 1730574 1730580, overlap 1730576 1730580 ACTGGTTTTTAAATA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2202 1730609 - 1730576 - T 100 -15.6 -2.60496 | opp_overlap 1730564 1730575 1730574 1730580, overlap 1730575 1730580 CTGGTTTTTAAATAT TAAAGACTCTATCC TTATTT GGATAGAGTCTTTA GCTTTATGACATTGC TERM 2203 1730605 - 1730580 - T 95 -12 -4.00532 | opp_overlap 1730564 1730575 1730574 1730580, overlap 1730576 1730575 TTTTTAAATATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA TERM 2204 1730580 - 1730605 + T 91 -12 -3.89215 | opp_overlap 1730580 1730576 1730575, overlap 1730564 1730575 1730574 TTTTTAAATATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA prsA 1731683 - 1730733 - | foldase protein PrsA M28_Spy1719 1732032 - 1731715 - | hypothetical protein TERM 2205 1731946 - 1731900 - G 71 -5.3 -4.64144 | gap 1, opp_overlap 1731908, overlap 1731908 AATAACTCCCAAAAA TCGTAAAAGGACTGAGTCCCAT CTCT ACAGAACTCAGTCC-TTTACCT TGGCATCTTAGGGAA TERM 2206 1731939 - 1731908 - G 100 -12.4 -4.31329 | opp_overlap 1731908, overlap 1731900 CCAAAAATCGTAAAA GGACTGAGTCCCAT CTCT ACAGAACTCAGTCC TTTACCTTGGCATCT M28_Spy1720 1732445 - 1732140 - | streptopain fragment speB 1733643 - 1732447 - | streptococcal pyrogenic exotoxin B M28_Spy1722 1734085 - 1733915 - | hypothetical protein M28_Spy1723 1734169 - 1734300 + | hypothetical protein TERM 2207 1735155 - 1735166 + G 70 -3 -5.09762 | CGATTCGGATGTTTG TCAA TATG TTGA TTTTGTTTATTCAGC rgg 1734584 - 1735426 + | transcriptional regulator TERM 2208 1735440 - 1735462 + T 84 -6.3 -5.02715 | opp_overlap 1735440 GAGGCTCTTTAAAAA GCTAACGCT CTTAT GGTGTTAGC TTTTTGATTTGGTAT TERM 2209 1735579 - 1735560 - T 88 -7.2 -5.06735 | opp_overlap 1735554 1735560, overlap 1735552 GACAAATCATAAAAA GCAATGAC GGCA ATCATTGC TTTTTCTAGTATTTT TERM 2210 1735560 - 1735579 + T 83 -6.5 -5.02201 | opp_overlap 1735560 1735552, overlap 1735554 GACAAATCATAAAAA GCAATGA CGGCAA TCATTGC TTTTTCTAGTATTTT mf 1736512 - 1735667 - | mitogenic factor M28_Spy1726 1736566 - 1736694 + | hypothetical protein M28_Spy1727 1736846 - 1737355 + | low temperature requirement C protein TERM 2211 1737395 - 1737357 - T 90 -13.4 -3.01329 | opp_overlap 1737362, overlap 1737362 CCAACCAACAATAAG TAAAACAAGTCTAGGAAA TGA CTCCCTAGACTTGTTTTT TTGAGGTTATCTGGC TERM 2212 1737390 - 1737362 - T 100 -13.3 -4.61824 | opp_overlap 1737362, overlap 1737357 CAACAATAAGTAAAA CAAGTCTAGGAAA TGA CTCCCTAGACTTG TTTTTTTGAGGTTAT TERM 2213 1737362 - 1737390 + T 100 -10.4 -5.48303 | opp_overlap 1737362 1737357 CAACAATAAGTAAAA CAAGTCTAGGAA ATGAC TCCCTAGACTTG TTTTTTTGAGGTTAT gldA 1738525 - 1737437 - | glycerol dehydrogenase TERM 2214 1737689 - 1737679 - G 73 -5.4 -4.63932 | GATTTTCCAAGAAAA GTTG GGT CAAC GTGCCATAGGCGACT TERM 2215 1737766 - 1737752 - G 72 -8.6 -3.54424 | TGTCAGCGCTGTAAA GCCATT GTG AATGGC ATGTGCAGCAGCCAG mipB 1739250 - 1738582 - | fructose-6-phosphate aldolase pflD 1741680 - 1739263 - | formate acetyltransferase TERM 2216 1739552 - 1739574 + g 70 -7.8 -3.68529 | opp_overlap 1739573, overlap 1739540 CCTCCGACAATCTCA TCTGTTGGTA ATT TAGCAACAGA TTTCAATACTGAAGT TERM 2217 1740171 - 1740192 + g 77 -6.5 -4.5774 | TGCGGGTAATTTCGC GCAGGGTGG CATC CCATGCTGC TTTTAATTCTTCATA TERM 2218 1740391 - 1740411 + g 72 -3.2 -5.14563 | opp_overlap 1740391 GGCTGAGTAATCATA GGCGTCTT CTTCT GAGACACC TTTTTTGATGAAAGA TERM 2219 1741864 - 1741845 - R 77 -5.7 -5.00616 | TCTTTTTCTAAAAAA CCACCTC TAACTG GAGATGG TCTCAAGAATTTGTG M28_Spy1731 1743195 - 1741891 - | PTS system, cellobiose-specific IIC component M28_Spy1732 1743534 - 1743205 - | PTS system, cellobiose-specific IIB component M28_Spy1733 1743861 - 1743541 - | PTS system, cellobiose-specific IIA component TERM 2220 1744115 - 1744093 - R 86 -5.5 -5.69793 | gap 1, opp_overlap 1744106 ACATCAAACAAAAAA GCCC-TGACC GTTT GGTCTTGGGC CTCTATAAATATCAT M28_Spy1734 1745129 - 1744149 - | sorbitol operon regulator M28_Spy1735 1745894 - 1745145 - | DeoR family transcriptional regulator TERM 2221 1745405 - 1745372 - G 70 -8.4 -3.32997 | gap 1, overlap 1745374 TGCCCATAAAGCCAA GATCTTTGTTGAAAC CGTCT GTTCCAACAAAGA-C ACGATTGACATGAAA TERM 2222 1745404 - 1745374 - G 83 -12.1 -3.23047 | overlap 1745372 CCCATAAAGCCAAGA TCTTTGTTGAAAC CGTCT GTTCCAACAAAGA CACGATTGACATGAA M28_Spy1736 1745960 - 1746790 + | pyruvate formate-lyase activating enzyme TERM 2223 1746984 - 1746965 - T 100 -13.6 -5.34555 | opp_overlap 1746961 TGATACTACAAAAAA GGCTGGGA ATAC TCCCAGCC TAGGCTTTTCCAAGC secE 1747203 - 1747027 - | preprotein translocase subunit SecE rpmG 1747369 - 1747217 - | 50S ribosomal protein L33 TERM 2224 1747246 - 1747264 + g 79 -6.8 -4.59982 | TGTGTAAGGTATATG TTTTGCAG TAT TTGCAAAA TTTATTTACTTCTAG pbp2A 1749754 - 1747418 - | multimodular transpeptidase-transglycosylase TERM 2225 1748763 - 1748773 + g 70 -3.2 -4.9138 | AGCCCTACTGCTCTA GCTT GTT GAGC TTTTGTTTGGGTAAT TERM 2226 1749663 - 1749675 + g 76 -3.3 -5.18357 | overlap 1749664 TTTTGATTGTGTTGT GGCGT TAA ACGCG TTTTTTGATGCATTA M28_Spy1740 1750173 - 1749793 - | translation initiation inhibitor M28_Spy1741 1750665 - 1750856 + | putative cytoplasmic protein M28_Spy1742 1750750 - 1751751 + | ribosomal large subunit pseudouridine synthase D TERM 2227 1751770 - 1751730 - T 100 -14.9 -3.57792 | opp_overlap 1751732 1751739, overlap 1751731 1751739 TGACGCAGTCTTAAA CGCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGTT TATCTGTTTTCATAG TERM 2228 1751769 - 1751731 - T 100 -18.4 -2.74461 | opp_overlap 1751732 1751739, overlap 1751730 1751739 GACGCAGTCTTAAAC GCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGT TTATCTGTTTTCATA TERM 2229 1751732 - 1751768 + T 100 -19.7 -4.34859 | opp_overlap 1751731 1751730 1751739, overlap 1751739 ACGCAGTCTTAAACG CTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAG TTTATCTGTTTTCAT TERM 2230 1751739 - 1751761 + T 100 -10.6 -4.41177 | opp_overlap 1751731 1751730 1751739, overlap 1751732 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTATCTG TERM 2231 1751761 - 1751739 - T 100 -12.8 -4.17089 | opp_overlap 1751739 1751732, overlap 1751731 1751730 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTATCTG M28_Spy1743 1753564 - 1751840 - | hypothetical protein M28_Spy1744 1753688 - 1755226 + | dipeptidase B TERM 2232 1755323 - 1755297 - T 100 -16.8 -5.15969 | opp_overlap 1755300 GCTGAAGTCAAAAAA TAAGGTCTCACA CTT TGTGAGACCTTA TCGGTATAGGAGGGG TERM 2233 1755300 - 1755320 + T 100 -14.1 -3.39327 | opp_overlap 1755297 GAAGTCAAAAAATAA GGTCTCACA CTT TGTGAGACC TTATCGGTATAGGAG M28_Spy1745 1755876 - 1755712 - | MutR family transcriptional regulator M28_Spy1746 1756218 - 1755949 - | MutR family transcriptional regulator TERM 2234 1756354 - 1756396 + r 77 -5 -5.1861 | opp_overlap 1756357, overlap 1756357 ATATCACAACTAAAA AAACAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTGTTC TTTTTTCATAGTAAG TERM 2235 1756357 - 1756393 + r 80 -6.7 -4.68456 | opp_overlap 1756357, overlap 1756354 TCACAACTAAAAAAA CAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTG TTCTTTTTTCATAGT TERM 2236 1756393 - 1756357 - R 93 -7.4 -5.68023 | opp_overlap 1756357 1756354 TCACAACTAAAAAAA CAAAGATGGGATATCA TGAGT CGAAATCCAATCTTTG TTCTTTTTTCATAGT groEL 1758097 - 1756466 - | chaperonin GroEL TERM 2237 1757716 - 1757733 + g 70 -9.9 -2.6462 | overlap 1757697 1757715 1757713 1757719 TGGCTTTCAAGGCTT CAACAGC TGTT GCTGTTG CTGTTTCAATGCCTC groES 1758423 - 1758133 - | co-chaperonin GroES TERM 2238 1758454 - 1758490 + r 100 -13.4 -3.59658 | gap 1, opp_overlap 1758448 1758458, overlap 1758458 TAAAAGAATCTTTAG TAAAGTTAGCACTC-AT GTTC ATCGAGTGCTAACTTTA TATTCTATTTTATCA TERM 2239 1758458 - 1758486 + r 100 -9.8 -4.3821 | gap 1, opp_overlap 1758458, overlap 1758454 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2240 1758486 - 1758458 - R 83 -9.8 -3.75015 | gap 1, opp_overlap 1758458 1758454 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2241 1758532 - 1758557 + r 82 -4.1 -5.52986 | opp_overlap 1758532, overlap 1758535 ATAGTCAAGAAAAAA GAAGTTATTTT TGTA AGAATAACCTC TTTTTTTGGTGACAT TERM 2242 1758557 - 1758532 - R 82 -4.1 -5.49234 | opp_overlap 1758532 1758535 ATAGTCAAGAAAAAA GAAGTTATTTT TGTA AGAATAACCTC TTTTTTTGGTGACAT clpC 1761045 - 1758601 - | negative regulator of genetic competence TERM 2243 1758679 - 1758699 + g 73 -8.4 -3.63054 | opp_overlap 1758679 1758678 1758681 CAATTCTCGAGAAAG GATAAGCT CTGAT AGCTTATC TTCTATCTCAGTTTG ctsR 1761506 - 1761045 - | transcriptional regulator TERM 2244 1761654 - 1761677 + r 87 -9.6 -3.90901 | opp_overlap 1761654, overlap 1761649 GTAGAAATCAAAAAA GCAGTTGTTG TTTC CAACATCTGC TTCTCTTTAGTTACT TERM 2245 1761677 - 1761654 - R 100 -9.6 -5.42514 | opp_overlap 1761654 1761649 GTAGAAATCAAAAAA GCAGTTGTTG TTTC CAACATCTGC TTCTCTTTAGTTACT csp 1761911 - 1761702 - | cold shock protein TERM 2246 1762133 - 1762110 - H 78 -7.5 -4.20368 | overlap 1762113 CTATGGTAAGATAAA CAAGTAGAG ATTCAA CTCTACTCG CTCTCACATCACCGT TERM 2247 1762406 - 1762370 - H 78 -2.4 -5.75538 | gap 1, overlap 1762364 CGCAAAAAATAAAAA CCTTGATTTAACAACGT TTTC ACGAAATTAA-TCAAGG CTTGTTTTGTATATA ahpC 1762901 - 1763461 + | peroxiredoxin reductase (NAD(P)H) ahpF 1763482 - 1765014 + | peroxiredoxin reductase (NAD(P)H) TERM 2248 1765022 - 1765067 + T 100 -10.7 -5.02074 | opp_overlap 1765031, overlap 1765031 GTCAATAAAATAGCA TATTTAAAAGAAGTTTTGAGC TAAC GCTCAAAGCTTCTTTTTGAAA TTTTTTAAAGAATAC TERM 2249 1765058 - 1765031 - T 100 -11.4 -4.2535 | opp_overlap 1765022 1765031 ATAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTGAAATTTTTT TERM 2250 1765031 - 1765058 + T 100 -13.6 -4.77925 | opp_overlap 1765031, overlap 1765022 ATAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTGAAATTTTTT hutI 1766358 - 1765072 - | imidazolonepropionase hutU 1766629 - 1768659 + | urocanate hydratase M28_Spy1756 1768747 - 1769646 + | glutamate formiminotransferase M28_Spy1757 1769657 - 1770283 + | formiminotetrahydrofolate cyclodeaminase fhs.2 1770301 - 1771974 + | formate--tetrahydrofolate ligase TERM 2251 1772114 - 1772103 - g 74 -4.4 -4.95155 | opp_overlap 1772103, overlap 1772097 TGGAGATTACAAAAA GAGA GAAT TCTC TTATCGCCTCTCAAA TERM 2252 1772577 - 1772537 - g 71 -7.6 -3.90112 | gap 1, opp_overlap 1772541 1772542 1772572, overlap 1772540 TTTGCCCCAATCAAA CAAGCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-CTTA TGGTATAAGACTTAG TERM 2253 1772574 - 1772540 - g 73 -7.1 -4.0825 | gap 1, opp_overlap 1772541 1772542 1772572, overlap 1772537 GCCCCAATCAAACAA GCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-C TTATGGTATAAGACT M28_Spy1759 1771975 - 1772592 + | putative cytoplasmic protein M28_Spy1760 1772812 - 1774155 + | amino acid permease TERM 2254 1774933 - 1774911 - g 71 -7.6 -3.86346 | CCATTCGCCCACAAA GCGGCCAGTT GGC AACAGCCCGC AATATCCGAAACCTC hutH 1774166 - 1775707 + | histidine ammonia-lyase TERM 2255 1775733 - 1775758 + F 71 -7.5 -3.61178 | ACTTCTTTAACTAGA GGGGCTGTGGC AGAG GTCATGGCCTC TTTAGACTAACTAAC hutG 1775884 - 1776879 + | formimidoylglutamase TERM 2256 1776908 - 1776877 - T 87 -13.2 -2.85013 | opp_overlap 1776882, overlap 1776882 ATGGCACAACATAAC TAAAACCCTCTGAT GTGA ATCAGAGGGTTTTC CTTAGCTTTTAGCAG TERM 2257 1776882 - 1776903 + T 100 -13.1 -4.48175 | opp_overlap 1776877 1776882 ACAACATAACTAAAA CCCTCTGAT GTGA ATCAGAGGG TTTTCCTTAGCTTTT TERM 2258 1776903 - 1776882 - T 100 -13.1 -4.57218 | opp_overlap 1776882, overlap 1776877 ACAACATAACTAAAA CCCTCTGAT GTGA ATCAGAGGG TTTTCCTTAGCTTTT M28_Spy1763 1779984 - 1776910 - | LuxR family transcriptional regulator TERM 2259 1777547 - 1777567 + g 73 -8.3 -3.6502 | opp_overlap 1777554 AAGTCAATCGACTGT TGAAGCAGA CGC TCTGCCTCA TTTAACTCCCCAATA TERM 2260 1780696 - 1780684 - g 71 -6.3 -4.15044 | GTTCTTCCTAAGAAA GAAGT TGC ACTTC TTAACAAACAACGCG TERM 2261 1780834 - 1780822 - g 76 -3.3 -5.23016 | opp_overlap 1780831 AAAGAAGCTAAAAAA CTTGG TAT CCCAG TCGTAGCGATGGTTG rpsB 1780288 - 1781055 + | 30S ribosomal protein S2 TERM 2262 1782000 - 1781979 - g 78 -2.9 -5.42265 | overlap 1781969 1781980 GCAAACCAGAAAAAA TCTGGGACA AAAT CATCCCAGG TAAAATGGACCGCTT tsf 1781189 - 1782229 + | elongation factor Ts TERM 2263 1782282 - 1782257 - T 71 -3.2 -5.11033 | opp_overlap 1782257, overlap 1782259 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTGTCAA TERM 2264 1782257 - 1782282 + T 89 -7.6 -5.24796 | opp_overlap 1782257 1782259 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTGTCAA TERM 2265 1782349 - 1782325 - T 100 -9.4 -5.32565 | opp_overlap 1782323 1782325, overlap 1782317 TAAGGAAGCAAAAAA CTGATCCTGT GTTTT ACAGAATCAG TCATTTTTATAATCA pepO 1784290 - 1782395 - | neutral endopeptidase TERM 2266 1783556 - 1783542 - G 77 -6.4 -4.57341 | overlap 1783543 AATTCTGTCCAAAAA CGTTCC TCA GGAACA ATAACCTTGTCAGGT TERM 2267 1784500 - 1784462 - R 100 -16.2 -3.28712 | opp_overlap 1784465 1784471, overlap 1784465 1784471 CTTTTTTCGTGACAA TCACCAAAAGCCTGAGGC CTA ACCTCAGGCTTTTAGTTA GTTATCAGCTAAAAT TERM 2268 1784497 - 1784465 - R 100 -17.9 -2.82623 | opp_overlap 1784465 1784471, overlap 1784462 1784471 TTTTCGTGACAATCA CCAAAAGCCTGAGGC CTA ACCTCAGGCTTTTAG TTAGTTATCAGCTAA TERM 2269 1784465 - 1784497 + r 100 -15 -3.45118 | opp_overlap 1784465 1784462 1784471, overlap 1784471 TTTTCGTGACAATCA CCAAAAGCCTGAGG CCTAA CCTCAGGCTTTTAG TTAGTTATCAGCTAA TERM 2270 1784491 - 1784471 - R 100 -13.3 -4.37527 | opp_overlap 1784465 1784471, overlap 1784465 1784462 TGACAATCACCAAAA GCCTGAGGC CTA ACCTCAGGC TTTTAGTTAGTTATC TERM 2271 1784471 - 1784491 + r 100 -12.6 -4.51197 | opp_overlap 1784471 1784465 1784462, overlap 1784465 TGACAATCACCAAAA GCCTGAGG CCTAA CCTCAGGC TTTTAGTTAGTTATC dexS 1786126 - 1784498 - | trehalose-6-phosphate hydrolase TERM 2272 1786147 - 1786176 + r 81 -7.9 -4.43844 | opp_overlap 1786145 1786147 1786148, overlap 1786148 1786149 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAACG TTTTCTCCCTAGTAA TERM 2273 1786175 - 1786147 - R 90 -11.2 -3.63744 | gap 1, opp_overlap 1786147 1786148 1786149, overlap 1786145 1786148 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAA-C GTTTTCTCCCTAGTA TERM 2274 1786148 - 1786175 + r 87 -11.4 -3.25824 | opp_overlap 1786147 1786145 1786148, overlap 1786147 1786149 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTCCCTAGTA TERM 2275 1786175 - 1786148 - R 83 -11.4 -2.78032 | opp_overlap 1786148 1786147 1786149, overlap 1786147 1786145 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTCCCTAGTA TERM 2276 1786149 - 1786174 + r 95 -14.9 -2.55012 | opp_overlap 1786147 1786148 1786145, overlap 1786148 1786147 CCTCCCTAAAATAGT TTCAGGAACTG ATCT CAGTTCCTGAA CGTTTTCTCCCTAGT M28_Spy1768 1788218 - 1786194 - | PTS system, trehalose-specific IIBC component M28_Spy1769 1788429 - 1789142 + | trehalose operon transcriptional repressor TERM 2277 1789148 - 1789182 + T 95 -8.9 -5.12068 | gap 2, opp_overlap 1789155, overlap 1789151 1789155 ACCAAAATAAAGACA GAAAA--AAGCCTTGCA AAA TGCAAGGCTTGCTTTTC TTTTTCTTGACTCTG TERM 2278 1789151 - 1789177 + T 93 -8 -5.42605 | opp_overlap 1789155, overlap 1789148 1789155 AAAATAAAGACAGAA AAAAGCCTTGCA AAA TGCAAGGCTTGC TTTTCTTTTTCTTGA TERM 2279 1789173 - 1789155 - T 100 -13.2 -5.51046 | opp_overlap 1789151 1789148 1789155 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC TERM 2280 1789155 - 1789173 + T 100 -13.2 -3.96867 | opp_overlap 1789155, overlap 1789151 1789148 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC TERM 2281 1789354 - 1789364 + T 73 -4 -5.02476 | opp_overlap 1789329, overlap 1789334 AAACTGTAAAGAATT TGAT AAT ATCA TTTTTTAAAAACTAT M28_Spy1770 1789660 - 1789421 - | MarR family transcriptional regulator TERM 2282 1790632 - 1790620 - g 79 -4.8 -5.0538 | CCTTACCTCAAAAAA CACC AAGAA GGTG CCCCAGGCTTAGCCT M28_Spy1771 1789945 - 1790802 + | glyoxalase family protein TERM 2283 1790899 - 1790878 - g 72 -4.5 -4.68655 | gap 1, overlap 1790882 CAACCGCAAAAGAAA TGATGATCCC TAA GGAATC-TCA CCCACACCTCCTTCC TERM 2284 1791022 - 1791012 - g 79 -6.8 -4.64763 | GCAGCTAAAAAAGAA CAGC AAC GCTG GCAAGACATGGCCTC TERM 2285 1791443 - 1791431 - g 72 -3.3 -5.06451 | opp_overlap 1791431 1791432, overlap 1791432 CACCATTTCAAAAAA GGCAC GAG GTGCA TTTCTCACTGCCTGT yaaA 1790844 - 1791575 + | hypothetical protein TERM 2286 1791560 - 1791587 + T 76 -10 -2.80512 | opp_overlap 1791567, overlap 1791560 1791567 TGAATTTGTCTATAT CAAAAAAGAGGC CTAG GCCTCTTTTTTA GTCTTTATTCACAAT TERM 2287 1791560 - 1791588 + T 82 -9.8 -3.68725 | gap 1, opp_overlap 1791567, overlap 1791560 1791567 TGAATTTGTCTATAT C-AAAAAAGAGGC CTAG GCCTCTTTTTTAG TCTTTATTCACAATT TERM 2288 1791567 - 1791580 + T 90 -8.1 -5.34055 | opp_overlap 1791567, overlap 1791560 1791560 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT TERM 2289 1791580 - 1791567 - T 90 -8.1 -5.21709 | opp_overlap 1791567 1791560 1791560 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT nrdG 1792366 - 1791749 - | anaerobic ribonucleoside-triphosphate reductase activating protein M28_Spy1774 1792872 - 1792363 - | acetyltransferase M28_Spy1775 1793822 - 1792881 - | putative oxidoreductase TERM 2290 1792934 - 1792922 - G 77 -7.7 -4.30987 | opp_overlap 1792918 ACTCTCCATAAGAAA GCTGA GAG TCAGC AATCTGTTGACAAAT TERM 2291 1793468 - 1793481 + g 77 -5.3 -4.90778 | opp_overlap 1793460 TGTTAAATCCTGCCA TCAGA AAAG TCTGA TTTTCTTTGGCTAAG M28_Spy1776 1793991 - 1793845 - | hypothetical protein TERM 2292 1794128 - 1794098 - R 93 -10.7 -4.06533 | opp_overlap 1794103, overlap 1794103 GAAACCATTAAACAA TAAAAGATTGCTT GCATG AAGCAACCTTTTA AGCATATCATATTTC TERM 2293 1794123 - 1794103 - R 83 -6.2 -5.02606 | opp_overlap 1794103, overlap 1794098 CATTAAACAATAAAA GATTGCTT GCATG AAGCAACC TTTTAAGCATATCAT nrdD 1796371 - 1794173 - | anaerobic ribonucleoside triphosphate reductase TERM 2294 1794459 - 1794473 + g 71 -5 -4.63218 | overlap 1794456 TAGTCCCAAACCGCT TCCAAG GCC TTTGGA TTTTGTTGCAAAACA TERM 2295 1796417 - 1796460 + r 73 -8.5 -3.19808 | gap 1, opp_overlap 1796417, overlap 1796415 1796421 CGACAACTAAAAAAA TCAATATATTGTGT-CAAGT TTTTT GCTCGAACACAATATATTGA TATTAGATTACTTTT TERM 2296 1796460 - 1796417 - R 100 -10 -5.68023 | gap 1, opp_overlap 1796417 1796415 1796421 CGACAACTAAAAAAA TCAATATATTGTG-TCAAG TTTTTTG CTCGAACACAATATATTGA TATTAGATTACTTTT M28_Spy1778 1798027 - 1796468 - | hypothetical protein TERM 2297 1797543 - 1797533 - G 73 -6.8 -4.2586 | opp_overlap 1797532 CGATATTAATATAAA TGGC ATA GCCA GTTGAGTAGGATACA TERM 2298 1798414 - 1798400 - R 86 -5.7 -5.6473 | opp_overlap 1798400 1798399, overlap 1798392 ATAACATTAAAAAAA TAGCC CTCAC GGCTA CTTTTTAACATAGTG M28_Spy1779 1798746 - 1798441 - | hypothetical protein M28_Spy1780 1799177 - 1798758 - | Holliday junction resolvase-like protein TERM 2299 1798917 - 1798903 - G 70 -8.6 -3.31144 | opp_overlap 1798908 1798916, overlap 1798907 CGTTCATCTTGATAA TGGACT GGA AGTCCA AAGAGGTGCTCTATG M28_Spy1781 1799443 - 1799174 - | hypothetical protein TERM 2300 1799542 - 1799554 + r 78 -7.7 -4.13767 | opp_overlap 1799542 GGTATTTAAAAAAAA GCTCT ACA AGAGC TTTTAGAGTGCAGCA TERM 2301 1799554 - 1799542 - R 100 -7.7 -5.81412 | opp_overlap 1799542 GGTATTTAAAAAAAA GCTCT ACA AGAGC TTTTAGAGTGCAGCA TERM 2302 1799567 - 1799580 + r 70 -8.1 -3.29187 | overlap 1799563 1799562 1799560 AGCTTTTAGAGTGCA GCACG TAAT CGTGC TTCAGTATTTTCAAT spxA 1799955 - 1799557 - | transcriptional regulator Spx TERM 2303 1799898 - 1799910 + g 77 -7.7 -4.1711 | GCTTATGGGCATTTA GCCAA GTT TTGGC TTTCTTGCAGCTCGT TERM 2304 1800034 - 1800019 - R 71 -7.6 -3.5511 | opp_overlap 1800010 1800019, overlap 1800017 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2305 1800019 - 1800034 + r 100 -7.6 -5.79588 | opp_overlap 1800019 1800017, overlap 1800010 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2306 1800227 - 1800242 + r 73 -4.6 -4.88228 | opp_overlap 1800229, overlap 1800229 AAAATACATTTTAAA AAGCCC TGAA GGGCTC TTTTTAATCTTCAAT TERM 2307 1800240 - 1800229 - R 83 -7.2 -4.6644 | opp_overlap 1800227 1800229 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA TERM 2308 1800229 - 1800240 + r 73 -7.2 -4.05583 | opp_overlap 1800229, overlap 1800227 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA recA 1801382 - 1800246 - | recombinase A cinA 1802742 - 1801471 - | competence damage-inducible protein A TERM 2309 1802818 - 1802792 - R 95 -8.9 -5.15634 | opp_overlap 1802792, overlap 1802812 CATTTTATCAAAAAA TCTTCCAATTC ACGAA GAATTAGAAGA TTCTATTGAAAACAC tag 1803380 - 1802811 - | DNA-3-methyladenine glycosylase ruvA 1803977 - 1803381 - | Holliday junction DNA helicase motor protein TERM 2310 1803570 - 1803586 + g 70 -9.5 -2.73243 | overlap 1803569 GGTATTACCAGTCTC TTGTGGA GCC TCCACAA ATTTGCCAGCTAAGT TERM 2311 1803820 - 1803807 - G 71 -6.7 -4.13254 | AAACCCAAACAACAA GTGAG CATC CTCAC GAATCACTTGATGCA lmrP 1805199 - 1803979 - | multidrug resistance protein B TERM 2312 1804455 - 1804443 - G 70 -9.1 -3.20349 | overlap 1804441 CTTGGAAACCTAACA CAGCC GTT GGCTG AAAATACAGTTTCAA TERM 2313 1805010 - 1804992 - G 73 -9.6 -3.14132 | CTTTTTTGCGACCAA GAGCATCT GAC AGATGCCC ACCGTATAAAGTTCC mutL 1807231 - 1805210 - | DNA mismatch repair protein TERM 2314 1806755 - 1806745 - G 79 -5.4 -5.00616 | opp_overlap 1806734 1806745 GCGTGTTGTAAAAAA GGTT TTC AACC TTAATTTTGGTTCCA M28_Spy1789 1808450 - 1807287 - | DNA integration/recombination/invertion protein TERM 2315 1807623 - 1807644 + g 71 -3.7 -4.83615 | overlap 1807626 CTGTCTCATTTGATA GAGCTTTAG GCTT CTAAGGGTC TTTTTATCAACACTA TERM 2316 1807895 - 1807885 - G 74 -4 -5.03747 | AAATGTTCTAAAAAA GATT TCA AATC AGACGGATCAATAAA TERM 2317 1808572 - 1808602 + H 80 -2.5 -5.74086 | opp_overlap 1808562 TATTAGTCTTTTTAA GACCTTGCGAG CGTGGAAAA CTTGCGTGGTC TTTTTTGTTTGGTTT M28_Spy1790 1808687 - 1808830 + | hypothetical protein TERM 2318 1808865 - 1808836 - T 76 -3.6 -5.28414 | gap 1 GAACAAATAGAAAAA CCGTCCCACACTT TAGCC AATCGTGG-ACGG TTTATAGAAAATATA TERM 2319 1808923 - 1808944 + T 100 -9.5 -5.04597 | opp_overlap 1808923 AACGGTGCTACCACA GGAGATTGT TTGC GCAATCTCC TTTTTCTATGTCCAT M28_Spy1791 1810459 - 1809692 - | phage transcriptional repressor M28_Spy1792 1810613 - 1810819 + | Cro/CI family phage transcriptional regulator M28_Spy1793 1810853 - 1811053 + | phage transcriptional repressor M28_Spy1794 1811074 - 1811481 + | phage protein M28_Spy1795 1811494 - 1811616 + | phage protein TERM 2320 1811784 - 1811764 - f 72 -4.9 -4.65722 | CTATATATAAATAAA TAATTAATA AAT CATTAATTA GACTTATTGTTTGTT M28_Spy1796 1811893 - 1812420 + | phage protein TERM 2321 1812419 - 1812402 - f 76 -4.1 -5.16237 | gap 1 AATGGCATTAAAAAA CACGCTAC AAT GC-GCGTG AAAACAACAAAAAAG M28_Spy1797 1812647 - 1812841 + | phage protein TERM 2322 1812892 - 1812846 - f 91 -5.3 -5.86976 | gap 1, overlap 1812847 1812849 TTACAAAATAAAAAA GTACTCTACCACGTTTACAATC GCCA AACCGTCAACGTGATAGAGC-C AGCACCCACAAAGTA TERM 2323 1812890 - 1812849 - f 86 -10.3 -3.59406 | overlap 1812846 1812847 CAAAATAAAAAAGTA CTCTACCACGTTTACAATC GCCA AACCGTCAACGTGATAGAG CCAGCACCCACAAAG TERM 2324 1813057 - 1813047 - g 71 -6.8 -4.05788 | overlap 1813050 CGGGCTTAAATGAAA GGAG GAA CTCC TATGAGTCCAAAAAT M28_Spy1798 1813041 - 1813232 + | phage protein TERM 2325 1813279 - 1813237 - f 100 -9.4 -5.93252 | gap 1 CTGAAAAATAAAAAA GTTCCTAACGTGGTATAGT TTGGCG ACCGTA-CACGTTAGGAAC TCCCAGCACCCACAA TERM 2326 1813320 - 1813365 + G 72 -3.5 -5.00895 | gap 1 TAAATAGTATATCAT GCGTACTCTATTT-TGTGAA CCTAAAA TTCATAGAAAGGGAGTGCGC TTTTTGTGTGCTCAA TERM 2327 1813791 - 1813769 - g 85 -5.5 -5.20333 | opp_overlap 1813769, overlap 1813770 CACTTACAACAAAAA GCGCTAGAG CGTAT CCCTAGCGA GTTATTCGCAGAATT TERM 2328 1813790 - 1813770 - g 76 -9 -3.71115 | opp_overlap 1813769, overlap 1813769 ACTTACAACAAAAAG CGCTAGAG CGTAT CCCTAGCG AGTTATTCGCAGAAT M28_Spy1799 1813256 - 1813825 + | phage protein M28_Spy1800 1813927 - 1814259 + | phage protein M28_Spy1801 1814256 - 1814450 + | phage protein M28_Spy1802 1814462 - 1814791 + | phage protein M28_Spy1803 1814794 - 1815066 + | phage protein M28_Spy1804 1815067 - 1815933 + | phage protein TERM 2329 1816845 - 1816833 - g 72 -3.3 -5.07053 | AATGACGTGAAAAAA CATCC TAT GGAGG TGGAAGAAGATTATT M28_Spy1805 1815945 - 1817339 + | phage protein TERM 2330 1817529 - 1817519 - f 74 -6.8 -4.28361 | overlap 1817508 TTAATGCTACTAAAA GCAC AAA GTGC CCAACCCCCTTGATA TERM 2331 1817570 - 1817609 + F 76 -7.4 -4.07568 | gap 1 TATCCCTGTGCTTTT TGCTGTGCTATTTGATTTT TAA AAAAACAAAAAGCACA-CA TTTTAGAGAGAAAAG M28_Spy1806 1817633 - 1817887 + | phage protein M28_Spy1807 1817884 - 1818057 + | phage protein M28_Spy1808 1818063 - 1818236 + | phage protein M28_Spy1809 1818238 - 1818747 + | phage protein TERM 2332 1818755 - 1818768 + F 76 -4.5 -5.10601 | TTAAATAGACATTCA GAGGG TTTT TCCTC TTTTTGTCGTTTTAT TERM 2333 1818990 - 1819000 + G 71 -4 -4.85129 | CAGGAACTTATGGTG GTAA ACG TTAC TTTTTCGTGTGTCCT M28_Spy1810 1818821 - 1819309 + | phage protein TERM 2334 1819515 - 1819501 - f 72 -5.8 -4.43681 | CATCTAAGACTAAAA TAAAAC ATT GTTTTA GCGCTTCTAGCTACT TERM 2335 1819664 - 1819635 - f 77 -5.7 -4.90918 | overlap 1819641 ACAAAACGAACAAAA CAAAAAGACGTCC ATAC GAACGCCCCCTTG GTTAAATTTAAGCTT TERM 2336 1819658 - 1819641 - f 86 -5.5 -5.62288 | overlap 1819635 CGAACAAAACAAAAA GACGTCC ATAC GAACGCC CCCTTGGTTAAATTT M28_Spy1811 1819713 - 1820075 + | phage protein M28_Spy1812 1820050 - 1820433 + | phage protein M28_Spy1813 1820598 - 1821251 + | phage protein TERM 2337 1821326 - 1821307 - T 77 -5.7 -4.99134 | opp_overlap 1821307 AGGGCAAACTAAAAA GCGTAGT ATTTAA ACCACGC TAGTTCTTGCCTGCT TERM 2338 1821359 - 1821372 + T 95 -6.7 -5.80364 | opp_overlap 1821358 1821359 ACTCATTGTGTAAAG GACCT GTAA AGGTC TTTTTTTGTTCACCT TERM 2339 1821625 - 1821602 - T 89 -7.5 -5.24796 | opp_overlap 1821602 TTGACAGAACAAAAA GATGCCTTC AATATA GAAAGCATC TTTTTCATTTTCAGC TERM 2340 1821602 - 1821625 + T 79 -5.3 -5.0925 | opp_overlap 1821602 TTGACAGAACAAAAA GATGCCTTC AATATA GAAAGCATC TTTTTCATTTTCAGC mutS 1824203 - 1821648 - | DNA mismatch repair protein TERM 2341 1822048 - 1822007 - G 100 -15.5 -3.25823 | gap 1, opp_overlap 1822009, overlap 1822009 GCGTTGCTACATGAA CATTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAATT CATGATAATGCGTTG TERM 2342 1822009 - 1822046 + g 100 -18.1 -3.23395 | gap 1, opp_overlap 1822009 1822007 GTTGCTACATGAACA TTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2343 1822046 - 1822009 - G 100 -18.1 -3.19602 | gap 1, opp_overlap 1822009, overlap 1822007 GTTGCTACATGAACA TTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2344 1824168 - 1824136 - G 80 -2.1 -5.54079 | gap 1, opp_overlap 1824136 1824139 CTAAAAAGCAAAAAA GCATCTGGATAATC TTTTTT GATG-TCCAGATAC TGTTGCATTCCAGGA M28_Spy1815 1824396 - 1824190 - | putative cytoplasmic protein argR2 1824976 - 1824539 - | arginine repressor argS 1825267 - 1826958 + | arginyl-tRNA synthetase TERM 2345 1827000 - 1826971 - f 76 -10.1 -2.88074 | opp_overlap 1826971, overlap 1826968 1826975 TAAGTAATAACATTA CTAAGGCTGTCAC ATTT ATGACAGTCTTAG TTTTTTATATTATAA TERM 2346 1826971 - 1827000 + F 100 -11.6 -5.5208 | opp_overlap 1826971 1826968 1826975 TAAGTAATAACATTA CTAAGGCTGTCA CATTTA TGACAGTCTTAG TTTTTTATATTATAA uviB 1827028 - 1827354 + | bacteriocin TERM 2347 1827383 - 1827352 - T 93 -9.7 -4.25283 | opp_overlap 1827352 1827358, overlap 1827358 AGTGGGGGACCAAAA TAAAAATACAGGC TGTTTG ACCTGTATTTTTA TTTATCATAATTTCT TERM 2348 1827352 - 1827383 + T 82 -9 -4.04811 | opp_overlap 1827352 1827358, overlap 1827358 AGTGGGGGACCAAAA TAAAAATACAGG CTGTTTGA CCTGTATTTTTA TTTATCATAATTTCT TERM 2349 1827377 - 1827358 - T 82 -4.3 -5.50723 | opp_overlap 1827352 1827358, overlap 1827352 GGACCAAAATAAAAA TACAGGC TGTTTG ACCTGTA TTTTTATTTATCATA TERM 2350 1827358 - 1827377 + T 79 -3.6 -5.40464 | opp_overlap 1827358 1827352, overlap 1827352 GGACCAAAATAAAAA TACAGG CTGTTTGA CCTGTA TTTTTATTTATCATA M28_Spy1819 1828253 - 1827381 - | hypothetical protein M28_Spy1820 1829249 - 1828296 - | hypothetical protein M28_Spy1821 1830135 - 1829194 - | hypothetical protein TERM 2351 1829424 - 1829447 + gr 75 -3 -5.18643 | overlap 1829425 TCACACGCTCTGGAT GGCTGGTAAC AATA GTTGCCTGCA TTTTCTTTTGCTTGG TERM 2352 1830000 - 1830030 + gr 74 -4 -5.09762 | opp_overlap 1829994 1830003, overlap 1830002 1830003 TAGAGAGAATGCCAT AAAGCAGAGAAG CCGAAAT CTTCTCTGCATA TTTTTCTCTTGAAAT TERM 2353 1830002 - 1830028 + gr 73 -6.6 -4.17211 | opp_overlap 1829994 1830003, overlap 1830000 1830003 GAGAGAATGCCATAA AGCAGAGAAG CCGAAAT CTTCTCTGCA TATTTTTCTCTTGAA TERM 2354 1830027 - 1830003 - GR 87 -10.1 -3.94381 | opp_overlap 1830002 1830000 1830003, overlap 1829994 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA TERM 2355 1830003 - 1830027 + gr 77 -10.1 -3.09242 | opp_overlap 1829994 1830003, overlap 1830002 1830000 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA aspS 1831927 - 1830128 - | aspartyl-tRNA synthetase TERM 2356 1830966 - 1830982 + g 70 -9.5 -2.52742 | overlap 1830955 1830965 TTGAAGTCAATTCCA TTGACAG TTA CTGTCAA GTCTTGTAAAAGCAT TERM 2357 1832116 - 1832153 + r 100 -12.2 -4.38129 | gap 1, opp_overlap 1832116 CTTACAGAAAACAAA CAGGTGCAAC-TCCCTT CTAAA AAGGGAAGTTACACCTG TTTTAGTGATTATCT TERM 2358 1832153 - 1832116 - R 100 -15.1 -4.83243 | gap 1, opp_overlap 1832116 CTTACAGAAAACAAA CAGGTGCAAC-TCCCTTC TAA AAAGGGAAGTTACACCTG TTTTAGTGATTATCT hisS 1833494 - 1832214 - | histidyl-tRNA synthetase TERM 2359 1833648 - 1833619 - H 84 -3.7 -5.61881 | opp_overlap 1833624, overlap 1833620 TTGTAAAAATAAAAA GTTTTGTCAAGTA ACTT TACTTTACAAAAA AGATATGTTATCATA TERM 2360 1833647 - 1833620 - H 73 -7.2 -3.95502 | opp_overlap 1833624, overlap 1833619 TGTAAAAATAAAAAG TTTTGTCAAGTA ACTT TACTTTACAAAA AAGATATGTTATCAT TERM 2361 1833660 - 1833650 - H 76 -4 -5.26316 | overlap 1833652 TTACTTTACAAAAAA GATA TGT TATC ATAGTGAAGTTGATG rpmF 1833714 - 1833896 + | 50S ribosomal protein L32 rpmG 1833912 - 1834061 + | 50S ribosomal protein L33 TERM 2362 1834214 - 1834240 + F 100 -10.9 -5.5762 | opp_overlap 1834214 GGATATTGAAGTTAA GCCCTGTTATC ATTTG GATGGCAGGGC TTTTTTATATTTGGT cadD 1834342 - 1834968 + | cadmium resistance protein cadC 1834950 - 1835318 + | cadmium efflux system accessory protein M28_Spy1828 1835348 - 1836292 + | hypothetical protein M28_Spy1829 1836358 - 1837110 + | FtsK/SpoIIIE family protein M28_Spy1830 1837107 - 1837709 + | hypothetical protein TERM 2363 1837716 - 1837754 + T 84 -5.3 -5.55695 | gap 2 AAGCGTTAATTCCTT GGGGCTG--TGGCTTGCGT TAA GCAAAAGCCAGACAGCCCC TTTTTTATATTCTTA TERM 2364 1837979 - 1838024 + T 77 -8.5 -3.53091 | opp_overlap 1837984 1837989, overlap 1837981 1837982 1837989 AAGTAAAATAATTGA GATGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCGTG TTTAAAAAAACAAAT TERM 2365 1837981 - 1838022 + T 87 -11.1 -3.34398 | opp_overlap 1837984 1837989, overlap 1837979 1837982 1837989 GTAAAATAATTGAGA TGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCG TGTTTAAAAAAACAA TERM 2366 1837982 - 1838021 + T 86 -12.4 -2.60496 | opp_overlap 1837984 1837989, overlap 1837981 1837979 1837989 TAAAATAATTGAGAT GAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTC GTGTTTAAAAAAACA TERM 2367 1837989 - 1838014 + T 89 -6.9 -5.32699 | opp_overlap 1837984 1837989, overlap 1837982 1837981 1837979 ATTGAGATGAGAAAA GCCTATGAAAT GAAC GTTTCAAAGGC TTTTTTCGTGTTTAA TERM 2368 1838014 - 1837989 - T 74 -6.2 -4.51378 | opp_overlap 1837989 1837982 1837981 1837979, overlap 1837984 ATTGAGATGAGAAAA GCCTATGAAA TGAACG TTTCAAAGGC TTTTTTCGTGTTTAA M28_Spy1831 1838469 - 1838185 - | transcriptional regulator TERM 2369 1838719 - 1838735 + H 73 -4.5 -4.88405 | overlap 1838714 1838728 1838729 ATAATTATCGTAAGG TTTACAG TCT TTGTAAA TTTTATTTACAACTT TERM 2370 1839517 - 1839527 + G 84 -6.8 -4.84761 | overlap 1839513 ATCGGAGGAGTCCTA GCCA TCT TGGC TTTTTCTAAAAGTAT M28_Spy1832 1838920 - 1839762 + | integral membrane protein TERM 2371 1839797 - 1839786 - T 70 -4.4 -4.82901 | GTTTGTTGACAAAAA GTTG ACGC CAAC AAACTAGTGCTCTAT TERM 2372 1839815 - 1839842 + T 95 -8.6 -5.29846 | gap 1 ACTAGTGCTCTATCT CCCCTTAGA-ATT TTC AATATCTGAGGGG TTTTTCTTTGCAATT M28_Spy1833 1840450 - 1839809 - | phosphohydrolase M28_Spy1834 1840517 - 1840362 - | hypothetical protein M28_Spy1835 1840657 - 1840983 + | PadR family transcriptional regulator M28_Spy1836 1840970 - 1841557 + | hypothetical protein TERM 2373 1841880 - 1841857 - g 71 -5.2 -4.59109 | overlap 1841858 CATATTTCTGAAAAA CCCAGAGATG TCAT CATCACCGGA GGTATTGAACTGATC M28_Spy1837 1841554 - 1842627 + | hypothetical protein TERM 2374 1842667 - 1842649 - T 93 -7.5 -5.64304 | opp_overlap 1842649, overlap 1842660 CAAGACAATAAAAAA CTTGACA GAAAT TGTCAAG TTATTGTCAAAATAA TERM 2375 1842649 - 1842667 + T 75 -8.2 -3.79906 | opp_overlap 1842649 1842660 CAAGACAATAAAAAA CTTGACAG AAA TTGTCAAG TTATTGTCAAAATAA TERM 2376 1842692 - 1842721 + T 100 -7.9 -6.10489 | opp_overlap 1842692 AAATAAGACAAAAAA CAGCATCTAGTGT AACT GCCTTAGATGCTG TTTTTTTTTGAGGTT TERM 2377 1842721 - 1842692 - T 83 -5 -5.57729 | opp_overlap 1842692 AAATAAGACAAAAAA CAGCATCTAGTG TAACTG CCTTAGATGCTG TTTTTTTTTGAGGTT M28_Spy1838 1845047 - 1842744 - | phage protein TERM 2378 1845131 - 1845105 - H 71 -8.8 -3.02491 | opp_overlap 1845107, overlap 1845104 1845107 CAAGAGAAAAAAATT CACTTTTGGACA TTA CGTCTAAAAGTG TTCAAAAGGAGAGAT M28_Spy1839 1845152 - 1845685 + | TetR family transcriptional regulator TERM 2379 1845823 - 1845793 - T 73 -9.2 -2.94218 | opp_overlap 1845795 1845801, overlap 1845801 ATTTGTTATGAGATA CAAAAAAAGCCTAT TAA ATAGGCTTTTTGTA AGTTTAATCTTAAAA TERM 2380 1845795 - 1845821 + T 75 -9.6 -2.71059 | opp_overlap 1845793 1845801, overlap 1845801 TTGTTATGAGATACA AAAAAAGCCTAT TAA ATAGGCTTTTTG TAAGTTTAATCTTAA TERM 2381 1845815 - 1845801 - T 95 -8.6 -5.76633 | opp_overlap 1845801 1845795, overlap 1845793 TGAGATACAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA TERM 2382 1845801 - 1845815 + T 95 -8.6 -4.94992 | opp_overlap 1845793 1845801, overlap 1845795 TGAGATACAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA M28_Spy1840 1846343 - 1846059 - | RelE-domain-containing protein M28_Spy1841 1846590 - 1846318 - | hypothetical protein M28_Spy1842 1847069 - 1846698 - | phage protein M28_Spy1843 1847406 - 1847059 - | phage protein TERM 2383 1847454 - 1847472 + r 82 -4.5 -5.50723 | overlap 1847448 AGATATAATCATGAA GGCGTTC CGTGT GGACGTC TTTTTGTTTTAGTCA TERM 2384 1847579 - 1847593 + r 72 -5.8 -4.371 | AGCAGACAGAAGCGC TAAAAC CAT GTTTTA TTTTAGTCTGATGGG TERM 2385 1847651 - 1847626 - R 72 -4.7 -4.79826 | opp_overlap 1847627, overlap 1847627 ATAGATGACGAAAAA GGGAGACAGTC AAAA AACTATCTCCT TATGACGACCTTGTG TERM 2386 1847650 - 1847627 - R 72 -8.2 -3.46811 | opp_overlap 1847627, overlap 1847626 TAGATGACGAAAAAG GGAGACAGTC AAAA AACTATCTCC TTATGACGACCTTGT M28_Spy1844 1847932 - 1847687 - | phage protein M28_Spy1845 1848188 - 1847907 - | phage protein M28_Spy1846 1848555 - 1848172 - | phage protein M28_Spy1847 1848818 - 1848552 - | phage protein M28_Spy1848 1849603 - 1848815 - | phage protein TERM 2387 1849674 - 1849632 - R 80 -6.5 -4.81249 | gap 1 TCTTAAATGCAAAAA GAGGTATATCCAAAAAAGCC ATTA AGCTTCAT-GAATATACCTC CGTTCTTCGGTCAGT M28_Spy1849 1849852 - 1849694 - | phage protein M28_Spy1850 1850111 - 1849866 - | phage protein TERM 2388 1850022 - 1849982 - GR 77 -9.7 -3.04248 | opp_overlap 1849988 CAACATCTTCCAACA CGGACACCTCACAAGCCCA TAG CGTGCCTGTGAAGTATCCT AAAATAGCTAACTTA M28_Spy1851 1850433 - 1850086 - | phage protein M28_Spy1852 1850608 - 1850435 - | phage protein M28_Spy1853 1850787 - 1850614 - | phage protein TERM 2389 1851056 - 1851091 + r 76 -9.8 -2.95113 | gap 1, overlap 1851055 GGTTTATACCCCCCA CAACCCCTACTGTC-TG GGT CATGGCGGTAGTGGTTG GTTTAGCTTTTCAAA M28_Spy1854 1852687 - 1851074 - | phage protein M28_Spy1855 1853198 - 1852677 - | phage protein M28_Spy1856 1853576 - 1853208 - | phage protein M28_Spy1857 1853679 - 1853485 - | phage protein M28_Spy1858 1854008 - 1853676 - | phage protein M28_Spy1859 1854202 - 1854020 - | phage protein M28_Spy1860 1854671 - 1854423 - | phage protein TERM 2390 1854687 - 1854700 + r 95 -4.5 -6.19302 | TTCTCCTTTATCCGT GCGTA TTAT TGCGC TTTTTTTTGTTGTCT M28_Spy1861 1855288 - 1854722 - | phage protein M28_Spy1862 1855492 - 1855304 - | phage protein TERM 2391 1855731 - 1855702 - g 71 -3.7 -4.84246 | overlap 1855703 AAAAGAACAAACAAA TCTCAATCAAAAA GATT TTTTTGATCAAGT CGTAAATAAGAAATT TERM 2392 1855793 - 1855780 - g 76 -6.7 -4.44819 | TAGAACATATCAAAA TTGGG AAAA CCCAA AGAATACAATCAAGC M28_Spy1863 1855661 - 1856104 + | phage protein TERM 2393 1856725 - 1856746 + G 75 -9.5 -3.26947 | opp_overlap 1856724 1856725 CTAAATAATATCAAT CGCCGTATT CTAC AATATGGCG TTACTATGCAAGTTA TERM 2394 1857431 - 1857409 - g 90 -8.4 -5.03145 | opp_overlap 1857409 GAAGGCGCTAAAAAA GCCGTCTCGA TTT TTGAGACAGC TATTAGCAATTTATA M28_Spy1864 1856284 - 1857447 + | DNA integration/recombination/invertion protein TERM 2395 1857453 - 1857480 + T 83 -10.6 -3.29649 | gap 1, opp_overlap 1857455, overlap 1857455 CAATTTATAATTAAC AAGGGT-GCCCCA CTT TGGGGCTACCCTC TTACTATACTAAAAT TERM 2396 1857478 - 1857455 - T 95 -13.2 -3.86312 | gap 1, opp_overlap 1857455 1857453 ATTTATAATTAACAA GGGT-GCCCCA CTT TGGGGCTACCC TCTTACTATACTAAA TERM 2397 1857455 - 1857478 + T 91 -13.2 -3.214 | gap 1, opp_overlap 1857455, overlap 1857453 ATTTATAATTAACAA GGGT-GCCCCA CTT TGGGGCTACCC TCTTACTATACTAAA TERM 2398 1857562 - 1857536 - T 100 -7.3 -5.79588 | opp_overlap 1857536 GTAAAATCAAAAAAA GCACCTTGGAA TAATG CCCCAAAGTGC TTAGTATCAAGGCTT rpsD 1858215 - 1857604 - | 30S ribosomal protein S4 TERM 2399 1858939 - 1858927 - R 100 -9.1 -5.28942 | TATTGTAAAGAAAAA GCCTC TAT GAGGC AAAAATCAATCTAAA M28_Spy1866 1859247 - 1858945 - | hypothetical protein holB 1860610 - 1859234 - | replicative DNA helicase TERM 2400 1860208 - 1860240 + g 91 -13.5 -2.62184 | opp_overlap 1860199 1860210 TTAAAATTTCATCAT AAGCTAGGTTGACAG ATT CTGTCAACCTAGCAA TAATATCACGCAACA TERM 2401 1860238 - 1860210 - G 100 -20.5 -3.43689 | opp_overlap 1860208, overlap 1860199 AAAATTTCATCATAA GCTAGGTTGACAG ATT CTGTCAACCTAGC AATAATATCACGCAA rplI 1861083 - 1860631 - | 50S ribosomal protein L9 M28_Spy1869 1863116 - 1861080 - | phosphoesterase, DHH family protein TERM 2402 1861333 - 1861368 + g 85 -4.2 -5.67063 | gap 1, overlap 1861334 1861337 GACAGTATCGTATCT GCAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATGA TTTTTTTCTCCTGCA TERM 2403 1861334 - 1861367 + g 75 -7.7 -3.99153 | gap 1, overlap 1861333 1861337 ACAGTATCGTATCTG CAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATG ATTTTTTTCTCCTGC TERM 2404 1862995 - 1862975 - G 77 -10.5 -3.32844 | TTTTTGATTGCATAA TACTGACAC AAA GTGCCAGTA GTCCAAATAAAATCA TERM 2405 1863110 - 1863094 - G 85 -5.8 -5.34555 | TTATACCATAAAAAA GCCCTG AAATA CAGAGC TTCCACTTGCTTTGA gidA 1865044 - 1863146 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA M28_Spy1871 1865485 - 1865168 - | phosphohydrolase TERM 2406 1865589 - 1865578 - R 73 -3.6 -5.04325 | overlap 1865579 GCTAAACCATAAAAA GGGC CAAA ACCC TAGAAGATTGCAGGA trmU 1867400 - 1866261 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2407 1866726 - 1866755 + g 72 -10.1 -2.65527 | overlap 1866725 1866724 AGTCATCATGCGACC TTTTTGTGCCGGT AAGT ACTGGCTCAAAAA CTGTTTGAAATTCTT TERM 2408 1866828 - 1866838 + g 71 -6.8 -4.10179 | CGTTGCAAGTCCTGC TCGC TCA GCGA TTTCTCTAACTTCTG TERM 2409 1867419 - 1867447 + H 74 -3.3 -5.21236 | opp_overlap 1867419 1867422, overlap 1867422 TAAGATAGAAAAAGA TAATCATCATATT ATG AATATTATGATTC TTTTTCTTATCAGTT TERM 2410 1867422 - 1867444 + H 72 -5 -4.68512 | opp_overlap 1867422 1867419, overlap 1867419 GATAGAAAAAGATAA TCATCATATT ATG AATATTATGA TTCTTTTTCTTATCA TERM 2411 1867572 - 1867585 + H 76 -2.5 -5.55769 | GGAATGCCAATCATT TTATT GCTC AATAA TTTTTTATTATAAAA sdhB 1867693 - 1868370 + | L-serine dehydratase TERM 2412 1868901 - 1868923 + G 80 -10.6 -3.38812 | overlap 1868899 GCAGAAGTTGGTTCT GCAGCTGC TATGAGT GCAGCTGC TCTTGTTAAAGCAGC sdhA 1868382 - 1869254 + | L-serine dehydratase TERM 2413 1869610 - 1869647 + T 100 -14.5 -4.17556 | opp_overlap 1869615, overlap 1869615 AGACAATTAAATACC AAAAACCTATTGTTAGT AAAT ACTAACAATAGGTTTTA TTTCTTCCAGCTATG TERM 2414 1869615 - 1869642 + T 100 -14.4 -5.09762 | opp_overlap 1869615, overlap 1869610 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG TERM 2415 1869642 - 1869615 - T 100 -14.4 -4.946 | opp_overlap 1869615 1869610 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG M28_Spy1875 1870282 - 1869668 - | transglycosylase SLT domain-containing protein TERM 2416 1870476 - 1870486 + r 74 -6.8 -4.39318 | opp_overlap 1870461 1870476, overlap 1870457 GTTCTGTATTGAACA GGAC TCA GTCC TTTTAGATTTCGTTC TERM 2417 1870609 - 1870569 - R 100 -9.2 -4.84642 | opp_overlap 1870581 1870588 CTCAAATGAAGAAAA GTACCTCAATCATTAGAT GTTGT ATCTAACTTTTGAGGTAC AATTCACTTCTTACT cbiQ 1871454 - 1870654 - | cobalt transport protein cbiO2 1872289 - 1871447 - | cobalt transporter ATP-binding subunit cbiO1 1873155 - 1872265 - | cobalt transporter ATP-binding subunit TERM 2418 1872355 - 1872371 + gr 77 -9.5 -3.29263 | opp_overlap 1872357 ACCTTCTTCTTGAAG CATCTGT ACA ACAGATG TTGTAAAAGGGATAT TERM 2419 1872540 - 1872550 + gr 79 -3.2 -5.4588 | CAGTCAGCTGGTAGT CGTC ACG GATG TTTTTTATAGTTTTG TERM 2420 1873031 - 1873044 + gr 73 -2.3 -5.20606 | ACATGAAACGATACG CCATC TAAT GTTGG TTTTTCTTGGTCTTT M28_Spy1879 1873648 - 1873106 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase M28_Spy1880 1874687 - 1873662 - | hypothetical protein M28_Spy1881 1876026 - 1874737 - | metalloprotease M28_Spy1882 1877272 - 1876028 - | metalloprotease TERM 2421 1876864 - 1876874 + g 78 -2.6 -5.50499 | CTGACTCGATGTAGT TAAT CAA ATTA TTTTTTTCAGTCTCA TERM 2422 1877525 - 1877566 + H 100 -7.7 -5.86609 | opp_overlap 1877534, overlap 1877528 1877529 AACAATTCAATTATT TTGAGATAATTTATTTAAT TTAT ATTAAATAAATTATCCTGA TTTTTCTTTTTTTGG TERM 2423 1877528 - 1877563 + H 80 -9.4 -3.557 | opp_overlap 1877534, overlap 1877525 1877529 AATTCAATTATTTTG AGATAATTTATTTAAT TTAT ATTAAATAAATTATCC TGATTTTTCTTTTTT TERM 2424 1877529 - 1877562 + H 87 -12.9 -2.6976 | opp_overlap 1877534, overlap 1877528 1877525 ATTCAATTATTTTGA GATAATTTATTTAAT TTAT ATTAAATAAATTATC CTGATTTTTCTTTTT M28_Spy1883 1877712 - 1877930 + | hyaluronan synthase hasA 1877971 - 1878972 + | hyaluronan synthase hasB 1879008 - 1880216 + | UDP-glucose 6-dehydrogenase TERM 2425 1881287 - 1881328 + G 100 -20.6 -5.4148 | opp_overlap 1881287 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA TERM 2426 1881328 - 1881287 - g 100 -20.6 -5.01732 | opp_overlap 1881287 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA hasC 1880398 - 1881312 + | UTP-glucose-1-phosphate uridylyltransferase M28_Spy1887 1881596 - 1882033 + | putative cytoplasmic protein recF 1882035 - 1883141 + | recombination protein F TERM 2427 1883189 - 1883142 - T 91 -13.2 -3.20382 | gap 1, opp_overlap 1883157, overlap 1883156 1883157 TCTGATATTCACTAA TAACATCAAAAAAAGGGTTCAGT TAA ACTGAGCC-TTTTTTTGATATTA TGTGGCGATTAAGAT TERM 2428 1883176 - 1883156 - T 84 -3.9 -5.6473 | opp_overlap 1883157, overlap 1883142 1883157 ATAACATCAAAAAAA GGGTTCAGT TAA ACTGAGCCT TTTTTTGATATTATG TERM 2429 1883175 - 1883157 - T 76 -7.4 -3.96398 | opp_overlap 1883157, overlap 1883156 1883142 TAACATCAAAAAAAG GGTTCAGT TAA ACTGAGCC TTTTTTTGATATTAT TERM 2430 1883157 - 1883175 + T 100 -9.6 -5.6473 | opp_overlap 1883157 1883156 1883142 TAACATCAAAAAAAG GGTTCAGT TAA ACTGAGCC TTTTTTTGATATTAT M28_Spy1889 1884061 - 1883198 - | glucose uptake protein TERM 2431 1884241 - 1884219 - R 93 -6.2 -5.80817 | TTTAATATAAAAAAA GAGCTGGCAC AAT ATGTCAGCCC TTAAAGTTACTAAAT guaB 1885745 - 1884264 - | inositol-5-monophosphate dehydrogenase TERM 2432 1885920 - 1885945 + r 81 -10.7 -2.8805 | opp_overlap 1885943 AAAAAATTCATTTGG GTCTTATTTTT AATC AAAAATAAGAC TATATAAAACATAAT trsA 1887075 - 1886053 - | tryptophanyl-tRNA synthetase II TERM 2433 1887138 - 1887112 - R 83 -6.5 -4.84527 | opp_overlap 1887112, overlap 1887114 TTGATATAGCAAAAA GTCCCCACGCT ATTAA AACGTGAGGGC GTTATTACAAGTAAT M28_Spy1892 1887292 - 1887167 - | hypothetical protein TERM 2434 1887725 - 1887715 - g 70 -2.6 -5.07652 | TCTTGGAAAACAAAA TTTT ATT AAAA CACTTTATGGTTCTT M28_Spy1893 1887494 - 1888366 + | hypothetical protein M28_Spy1894 1888445 - 1890064 + | ABC transporter ATP-binding protein TERM 2435 1890083 - 1890110 + F 90 -8.4 -5.1361 | opp_overlap 1890082, overlap 1890085 CTTATGATAAATGAG GTGGCTAAGAAG ATCT CTTCCTAGCCTC TTTTTTAAAATTTGT TERM 2436 1890085 - 1890108 + F 93 -9.6 -4.18259 | opp_overlap 1890082, overlap 1890083 TATGATAAATGAGGT GGCTAAGAAG ATCT CTTCCTAGCC TCTTTTTTAAAATTT TERM 2437 1891285 - 1891305 + G 80 -7.7 -4.37527 | opp_overlap 1891285, overlap 1891290 AAGAAGTGACTCAAA TAAAAGCAG GTT TTGCTTTTA TTTTCCTCATTATAC TERM 2438 1891290 - 1891300 + G 72 -3.2 -5.14626 | opp_overlap 1891285, overlap 1891285 GTGACTCAAATAAAA GCAG GTT TTGC TTTTATTTTCCTCAT M28_Spy1895 1890147 - 1892723 + | ABC transporter, permease protein TERM 2439 1892824 - 1892772 - T 71 -8.7 -3.12432 | opp_overlap 1892773 1892778, overlap 1892778 AAATGAGTCAATATA CTAAAAGCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGCTTTTAT CGATTTTACTAATAA TERM 2440 1892773 - 1892823 + T 84 -12.2 -2.78495 | opp_overlap 1892772 1892778, overlap 1892778 AATGAGTCAATATAC TAAAAGCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGCTTTTA TCGATTTTACTAATA TERM 2441 1892818 - 1892778 - T 81 -7.7 -4.43213 | opp_overlap 1892773 1892778, overlap 1892772 GTCAATATACTAAAA GCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGC TTTTATCGATTTTAC TERM 2442 1892778 - 1892818 + T 82 -7.7 -4.54477 | opp_overlap 1892778 1892772, overlap 1892773 GTCAATATACTAAAA GCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGC TTTTATCGATTTTAC TERM 2443 1893207 - 1893189 - T 100 -10.4 -5.99154 | opp_overlap 1893188 1893187 TACTAAATAAAAAAA TCCTAAGA TTA TCTTAGGA AATATCTTATCACTC TERM 2444 1893320 - 1893306 - T 95 -5 -6.20267 | GGAAAAAGAAAAAAA TTGCCA AAA TGACAA TTGCGATAGTCCGTA M28_Spy1896 1894180 - 1893593 - | transposase TERM 2445 1894631 - 1894617 - R 84 -5.7 -5.5762 | opp_overlap 1894617, overlap 1894610 ATCAAAGATAAAAAA GCACT GTTTT AGTGC TTTTTTTTGTATTTA TERM 2446 1894617 - 1894631 + r 100 -6.4 -6.15717 | opp_overlap 1894617 1894610 ATCAAAGATAAAAAA GCACTG TTT TAGTGC TTTTTTTTGTATTTA M28_Spy1897 1895242 - 1894763 - | SPOUT methyltransferase superfamily protein TERM 2447 1895343 - 1895310 - H 89 -13.5 -2.71011 | opp_overlap 1895314 1895318 1895320, overlap 1895314 1895320 ATTTTTCTTCAACTA CTAATAAAAACCTTT GTAC AAAGGTCTTTATTAG TAAAAAGAAAAGTAA TERM 2448 1895339 - 1895314 - H 73 -8.5 -3.27298 | opp_overlap 1895314 1895318 1895320, overlap 1895310 1895320 TTCTTCAACTACTAA TAAAAACCTTT GTAC AAAGGTCTTTA TTAGTAAAAAGAAAA TERM 2449 1895333 - 1895320 - H 79 -5.3 -5.16071 | opp_overlap 1895318 1895314 1895320, overlap 1895314 1895310 AACTACTAATAAAAA CCTTT GTAC AAAGG TCTTTATTAGTAAAA TERM 2450 1895382 - 1895350 - H 100 -19.5 -4.77036 | opp_overlap 1895350, overlap 1895355 CTTTATTAGTAAAAA GAAAAGTAATCCACA GCC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2451 1895350 - 1895382 + H 100 -19.5 -6.4275 | opp_overlap 1895350 1895355 CTTTATTAGTAAAAA GAAAAGTAATCCACA GCC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2452 1895377 - 1895355 - H 100 -13.6 -5.3104 | opp_overlap 1895350, overlap 1895350 TTAGTAAAAAGAAAA GTAATCCACA GCC TGTGGATTAC TTTTCTTTTTTTTAT htrA 1895454 - 1896677 + | protease Do TERM 2453 1896710 - 1896738 + F 100 -17.7 -4.55093 | opp_overlap 1896702 1896712 1896717, overlap 1896717 TATTACATTTTATCA CATAAAACAGTCC AAA GGACTGTTTTATG TTTCTTATTCTATCC TERM 2454 1896736 - 1896712 - f 95 -14.5 -2.80443 | opp_overlap 1896710 1896717, overlap 1896702 1896717 TTACATTTTATCACA TAAAACAGTCC AAA GGACTGTTTTA TGTTTCTTATTCTAT TERM 2455 1896731 - 1896717 - f 100 -10 -4.57353 | opp_overlap 1896710 1896717, overlap 1896712 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT TERM 2456 1896717 - 1896731 + F 100 -10 -4.91194 | opp_overlap 1896717 1896712, overlap 1896710 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT parB 1896736 - 1897542 + | chromosome partitioning protein