TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.60652 %AT, 1497764 nt, 10050 terms. Intergenic: 0.650831 %AT, H2T: 252955 nt, 1919 terms; T2T: 49075 nt, 1046 terms; H2H: 64187 nt, 903 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|209558587|ref|NC_011375.1| Streptococcus pyogenes NZ131, complete genome (length 1815785) dnaA 232 - 1587 + | Chromosomal replication initiator protein dnaA TERM 1 1642 - 1616 - f 73 -7.4 -3.73402 | overlap 1618 ATATCTTTTATGAAA TAGTTATCCACA AGT TGTGAACAACCA TTTAGTCTTGGATTC TERM 2 1877 - 1848 - g 70 -2.9 -5.1356 | opp_overlap 1836 1853, overlap 1850 TTTCATCAATAAAAA TTGAAGTCACTTC TACA GGAGTAACTTTAA CAGGGTCTAACGGTC TERM 3 2180 - 2190 + G 71 -6.8 -4.0896 | TTGAAGTCTATTATT GCTG AAA CAGC TTTTGCAGCCAGTTT dnaN 1742 - 2878 + | Beta subunit of DNA polymerase III TERM 4 2890 - 2903 + F 93 -3.8 -5.97979 | opp_overlap 2890 CTAAGTAAGAAAAAG CTCC CTTTTA GGAG TTTTTTTGTTATTAT Spy49_0003 2953 - 3150 + | hypothetical protein Spy49_0004 3480 - 4595 + | GTP-binding and nucleic acid-binding protein YchF TERM 5 5154 - 5180 + G 90 -8.8 -4.86731 | GCTATTTCGTTAACT CTTGACAGAGTT GTC AATGCTGTCAAG TTTTATTTACAAGAA pth 4665 - 5234 + | Peptidyl-tRNA hydrolase TERM 6 6229 - 6215 - g 70 -8.6 -3.29626 | GAAGATTTACAGCAA GGAAAG GCT CTTTCC AATCTTAACTACTTT TERM 7 7292 - 7273 - g 70 -5.8 -4.32034 | overlap 7274 GCAGCATTATGAAAA CTTCAAAG CACG CTTTGAAA ATTACCCTGTTGAGG TERM 8 7532 - 7509 - g 70 -3.2 -4.95957 | overlap 7510 TAAAGGAATTAAAAA CTAAGGTTGA CGTC TTAACCTTAA CAGCTACTCCGATTC TERM 9 7890 - 7914 + G 72 -4.3 -4.67607 | opp_overlap 7892, overlap 7892 CGATCATCGAAACAG GAGTTGACATT TCT AATGTAAACAC TTTGTTTATTGAGAA trcF 5321 - 8740 + | Transcription-repair coupling factor Spy49_0008 8902 - 9174 + | hypothetical protein TERM 10 9357 - 9331 - g 76 -11.1 -2.74605 | opp_overlap 9329 TCTTGTCAAAAGTTA TGTTGATTTTG AAAAG CAAAATCAACA GGTGGTTAAATTAAA divIC 9161 - 9532 + | Putative cell division protein TERM 11 10157 - 10132 - g 79 -6.9 -4.57569 | TCATTTGCTCAAAAA GTTCATGCCAC TCAA ATGGCACAAAC AAACCATGGAACTTA Spy49_0010 9667 - 10953 + | hypothetical protein TERM 12 11001 - 10988 - g 88 -3.9 -5.72053 | TAATGAAATAAAAAA TAAAG CCTA CTTTA AAAATCATAGACATG TERM 13 11035 - 11063 + G 82 -6.1 -4.92363 | TAATAGCCGTATCTG GTGGAGTAGATTC AAT GAATTTATTGCAC TTTTTGTACCTGTTT mesJ 10950 - 12236 + | tRNA(Ile)-lysidine synthetase hpt 12241 - 12783 + | Hypoxanthine-guanine phosphoribosyltransferase TERM 14 13954 - 13924 - g 77 -4.8 -4.87389 | CATGCTAAAAATAAA CCACTTGCAAATGA CGT TAATTTGAAAGTAG TAGCCCAACAGACTC ftsH 12805 - 14784 + | Cell division protein ftsH TERM 15 14831 - 14782 - f 95 -14.8 -3.33261 | gap 1, opp_overlap 14794, overlap 14794 TCTGAATCTGCAGAA TG-AGATAAAAAAGCTGAACTTA TAGAT TAAGTTCAGCTTTTTTATCAACA CAATATCCTTGTAAA TERM 16 14794 - 14818 + F 100 -11.6 -5.24129 | opp_overlap 14782 14794 GAATGAGATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA TERM 17 14818 - 14794 - f 100 -11.6 -5.42131 | opp_overlap 14794, overlap 14782 GAATGAGATAAAAAA GCTGAACTTA TAGAT TAAGTTCAGC TTTTTTATCAACACA Spy49_0014 15041 - 16501 + | Putative amino acid permease TERM 18 16612 - 16648 + F 91 -12.4 -3.16683 | opp_overlap 16608 16616, overlap 16616 AATATTTAAAATTAC CCAACCCCTAGAGAAT TGATT AGTCTCTAGGGGTTGA TTGGTACAATGACAT TERM 19 16644 - 16616 - f 89 -11.8 -3.19038 | opp_overlap 16616 16612, overlap 16608 TTTAAAATTACCCAA CCCCTAGAGAAT TGATT AGTCTCTAGGGG TTGATTGGTACAATG TERM 20 16616 - 16644 + F 90 -11.8 -3.40371 | opp_overlap 16608 16616, overlap 16612 TTTAAAATTACCCAA CCCCTAGAGAAT TGATT AGTCTCTAGGGG TTGATTGGTACAATG TERM 21 17040 - 17026 - f 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 22 19305 - 19326 + F 75 -10.1 -2.58544 | opp_overlap 19306, overlap 19304 ACGGCAGGAGGGCAA ACCGAGGAG TTTA CTCCTCGGG GTTGTAGGACTGCGA TERM 23 19325 - 19306 - f 100 -13.6 -3.62096 | opp_overlap 19305 19304 CGGCAGGAGGGCAAA CCGAGGAG TTTA CTCCTCGG GGTTGTAGGACTGCG TERM 24 23043 - 23029 - f 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 25 25306 - 25327 + F 75 -10.1 -2.58544 | opp_overlap 25307, overlap 25305 ACGGCAGGAGGGCAA ACCGAGGAG TTTA CTCCTCGGG GTTGTAGGACTGCGA TERM 26 25326 - 25307 - f 100 -13.6 -3.62096 | opp_overlap 25306 25305 CGGCAGGAGGGCAAA CCGAGGAG TTTA CTCCTCGG GGTTGTAGGACTGCG TERM 27 26018 - 25985 - f 71 -8.9 -3.03412 | overlap 25984 26007 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 28 29767 - 29779 + F 95 -5.5 -6.50115 | opp_overlap 29767 ATAAAGGGGAAAGAA GACGG TTA TCGTC TTTTTTTTTTGTAAT TERM 29 31399 - 31387 - g 73 -2 -5.28683 | overlap 31395 ATTAACAGCAAAAAA TTCA GAACT TGAA GAACTTTCAAAAGGA TERM 30 31596 - 31586 - g 73 -6.8 -4.24342 | overlap 31582 GTTGCTATTAACAAA GCAG TCT CTGC TAATGCTAAGATGCT Spy49_0015 31169 - 32365 + | Putative secreted protein Streptputative secreted protein TERM 31 32377 - 32398 + F 100 -11.7 -4.90869 | opp_overlap 32373 CTAACATATTATTTA GGTTAGAAC AGTT GTTCTAACC TTTTTGATTACTCCT prsA 32618 - 33580 + | Ribose-phosphate pyrophosphokinase TERM 32 33591 - 33613 + F 100 -9.9 -4.75174 | opp_overlap 33591 ATTAAACTTAACGAA GCCTGAGAT AATAG ATCTCGGGC TTTTTGACTTGAATA recO 33766 - 34521 + | DNA repair protein recO Spy49_0018 34624 - 35631 + | Fatty acid/phospholipid synthesis protein plsX acp 35624 - 35866 + | Acyl carrier protein TERM 33 35870 - 35905 + F 100 -18 -3.53091 | opp_overlap 35873 35876 35882, overlap 35873 35876 35882 CGTTTGACTTAGTTA GAATAATAAAAAGAGC GTAA GCTCTTTTTATTATTC TTTAAAAACGAACCT TERM 34 35873 - 35902 + F 100 -13.9 -3.90744 | opp_overlap 35873 35876 35882, overlap 35870 35876 35882 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 35 35902 - 35873 - f 95 -13.9 -3.36878 | opp_overlap 35873 35870 35876 35882, overlap 35876 35882 TTGACTTAGTTAGAA TAATAAAAAGAGC GTAA GCTCTTTTTATTA TTCTTTAAAAACGAA TERM 36 35899 - 35876 - f 90 -11.2 -3.82378 | opp_overlap 35873 35870 35876 35882, overlap 35873 35882 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 37 35876 - 35899 + F 93 -11.2 -4.08557 | opp_overlap 35876 35873 35882, overlap 35873 35870 35882 ACTTAGTTAGAATAA TAAAAAGAGC GTAA GCTCTTTTTA TTATTCTTTAAAAAC TERM 38 35882 - 35893 + F 86 -5.8 -5.40014 | opp_overlap 35876 35873 35882, overlap 35876 35873 35870 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT TERM 39 35893 - 35882 - f 84 -5.8 -5.34365 | opp_overlap 35882 35876 35873 35870, overlap 35876 35873 TTAGAATAATAAAAA GAGC GTAA GCTC TTTTTATTATTCTTT purC 35987 - 36721 + | Phosphoribosylaminoimidazole-succinocarboxamide synthase purL 36798 - 40571 + | Phosphoribosylformylglycinamidine synthase, synthetase subunit/Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit purF 40805 - 42259 + | Amidophosphoribosyltransferase TERM 40 42386 - 42365 - g 90 -3.8 -6.01369 | gap 1 GAAAGAATAAAAAAA CACGTTGCT CGTAC AG-AACGTG CGGGAGTCATGGGAG purM 42287 - 43309 + | Phosphoribosylformylglycinamidine cyclo-ligase purN 43477 - 44031 + | Phosphoribosylglycinamide formyltransferase TERM 41 44416 - 44388 - g 75 -10.3 -2.92475 | overlap 44387 44390 TGGATTCCCAGAAAT GATGGACGGTCGT GTT AAGACCCTCCATC CAAACATTCACGGTG TERM 42 44638 - 44625 - g 79 -6.7 -4.58395 | CTCAGCCGCTAAAAA TCACG CTAG CGTGA CCGTTGTGGCTGACC TERM 43 45729 - 45715 - g 74 -6.4 -4.42062 | opp_overlap 45714, overlap 45711 GACGCCGCAAACAAA CATGGC TTG ACCATG ATCTTCACAGGTGTG purH 44215 - 45762 + | IMP cyclohydrolase/ Phosphoribosylaminoimidazolecarboxamide formyltransferase TERM 44 45791 - 45771 - T 93 -6.2 -5.84381 | opp_overlap 45771 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTATTAAAAGA TERM 45 45771 - 45791 + T 79 -4 -5.4505 | opp_overlap 45771 GCATTAATAAAAAAA TGTGGTCT AATTA AAACCACA TTTTTTATTAAAAGA Spy49_0026c 46944 - 45820 - | Autolysin TERM 46 46629 - 46606 - G 76 -9 -3.72695 | gap 1, opp_overlap 46606 46603 46610 46616 AGCGTTTTTATCAAA CCAAGCGATAG CCC CTAT-GCTTGG TGGCTTATTCACAGG TERM 47 47767 - 47790 + G 73 -6.7 -4.27441 | GAGGAATTCTTGGAT GGCGAGGAG TTTTCC CTCTTTGCC TTTGTTAATGGTGAT purD 47107 - 48462 + | Phosphoribosylamine--glycine ligase TERM 48 48509 - 48497 - f 79 -9.1 -3.40073 | AGCGTCAGCAATCAA CGACC GAA GGTCG CTCCAAAAAGAAAGA purE 48621 - 49232 + | Phosphoribosylaminoimidazole carboxylase catalytic subunit TERM 49 49272 - 49290 + G 73 -10.3 -2.87132 | opp_overlap 49274, overlap 49274 TCAGCTAGGGCAGAT GATGGCC ATTGC GGCCATC TATATGGGCCACAAG purK 49216 - 50292 + | Phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 50 51527 - 51502 - g 78 -2.7 -5.35815 | gap 1, overlap 51504 TAGATGAAAGAAAAA TTCC-CTATATA AAA TATATAGCGGCA TATCAAACAAGTCCA Spy49_0030 50394 - 51875 + | hypothetical protein purB 52048 - 53340 + | Adenylosuccinate lyase TERM 51 53367 - 53352 - f 93 -4.7 -6.10295 | opp_overlap 53352 53345 53365, overlap 53341 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA TERM 52 53352 - 53367 + F 86 -4.7 -5.63517 | opp_overlap 53341 53352, overlap 53345 53365 TTAATATAAAAAAAA GAAGG TGATTC CCTTC TTTTTTATTTAAAAA Spy49_0032 53471 - 54391 + | Transcriptional regulator, Cro/CI family ruvB 54617 - 55615 + | Holliday junction DNA helicase ruvB TERM 53 56038 - 56028 - g 75 -5.4 -4.66833 | overlap 56037 CGGTAATGTGAAAAA TCTC AAA GAGA TGTCGCAACATCAAT Spy49_0035 55753 - 56190 + | Low molecular weight protein tyrosine phosphatase Spy49_0036 56213 - 56614 + | hypothetical protein TERM 54 56786 - 56798 + G 71 -4.1 -5.00616 | overlap 56787 CAAAAAAAGAGTCTA TCGAT ATT ATCGG TTTTTTAAAAAGACG Spy49_0037 56611 - 58386 + | Putative acyltransferase TERM 55 58613 - 58593 - f 83 -4.8 -5.48303 | opp_overlap 58593, overlap 58594 ATAATTTGAAAAAAA CTTCACAA ATTTA TTGTGAAA TGATTTACAAAATTT adhE 58695 - 61337 + | Alcohol dehydrogenase TERM 56 61361 - 61392 + F 100 -12.6 -5.19275 | opp_overlap 61361 GTTGATACCAGGAAA TGATTTCTTATGAT TAAA GTCATAAGAAATCA TTTTATTTTCTAAAT TERM 57 61392 - 61361 - f 91 -11.9 -3.81951 | opp_overlap 61361 GTTGATACCAGGAAA TGATTTCTTATGA TTAAAG TCATAAGAAATCA TTTTATTTTCTAAAT TERM 58 61491 - 61511 + F 79 -9.1 -3.3447 | opp_overlap 61487 61479, overlap 61487 TAACCAGTTAAGTTT CAGAAACTT TTC AGGTTTCTG TTGACTTTAATTGTG adhP 61589 - 62605 + | Alcohol dehydrogenase TERM 59 62716 - 62662 - f 91 -11.9 -3.61371 | gap 2, opp_overlap 62667, overlap 62667 AAACTTGATTCCAAA TAAAATAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTATTTTG ATACATTGAAAGTTG TERM 60 62711 - 62667 - f 100 -11.8 -4.88918 | gap 2, opp_overlap 62667, overlap 62662 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTGA--CTCGAGAGTGCTA TTTTGATACATTGAA TERM 61 62667 - 62711 + F 100 -14 -4.30978 | gap 2, opp_overlap 62667 62662 TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTG--ACTCGAGAGTGCTA TTTTGATACATTGAA norM 62993 - 64282 + | Na+ driven multidrug efflux pump TERM 62 64269 - 64290 + F 86 -5.9 -5.40072 | opp_overlap 64270, overlap 64270 AAAAGTACCAAGAAA TTACCTTTC ATTA GGAAGGTAG TTTTTTTGAAAAAAA TERM 63 64270 - 64289 + F 70 -7.2 -3.83561 | opp_overlap 64270, overlap 64269 AAAGTACCAAGAAAT TACCTTTC ATTA GGAAGGTA GTTTTTTTGAAAAAA TERM 64 64355 - 64370 + F 71 -7.6 -3.58343 | TTATTATATTGTGGT GCTGTA AAAA TACAGC TTTAGCAATGATACA rpsJ 64481 - 64789 + | SSU ribosomal protein S10p (S20e) TERM 65 64893 - 64903 + F 79 -4 -5.49568 | CAGAAGTTTTTGTGT TAGA TTT TCTA TTTTTATTTTGAGTT TERM 66 64978 - 64954 - f 70 -2.1 -5.32882 | overlap 64955 64967 64968 TATGAGCACAAAAAA CGCTCGTAAAA AAC TTTTTTGAGCA CAAAAAACGCTCATA TERM 67 65607 - 65579 - g 70 -5.4 -4.40358 | gap 1, overlap 65582 65598 AGTTATCCCAGAAAA GAACGTTATCCTT ATTA AAGG-TAACGTAC CAGGTGCTAAGAAAT TERM 68 65604 - 65582 - g 70 -5.7 -4.32067 | gap 1, overlap 65579 65598 TATCCCAGAAAAGAA CGTTATCCTT ATTA AAGG-TAACG TACCAGGTGCTAAGA rplC 65037 - 65663 + | LSU ribosomal protein L3p (L3e) rplD 65687 - 66310 + | LSU ribosomal protein L4p (L1e) TERM 69 66350 - 66337 - g 76 -3.1 -5.28481 | opp_overlap 66344, overlap 66338 GACGTAATCAAAAAA CCAGT TATC ACTGA GAAGTCAATGATTGC rplW 66310 - 66540 + | LSU ribosomal protein L23p (L23Ae) rplB 66625 - 67458 + | LSU ribosomal protein L2p (L8e) TERM 70 67702 - 67684 - g 84 -2.4 -5.83211 | GACGAAAAGAAAAAA GTAATCAA AAC TTGGTCAC GTCGTTCAACGATTT rpsS 67597 - 67875 + | SSU ribosomal protein S19p (S15e) TERM 71 67933 - 67955 + G 79 -9.2 -3.86106 | overlap 67924 ATGGCTCGTACAGTG CGTGTTTCAC CTC GTAAAACACG TTTAGTACTTGATCT rplV 67891 - 68235 + | LSU ribosomal protein L22p (L17e) rpsC 68275 - 68901 + | SSU ribosomal protein S3p (S3e) rplP 68905 - 69318 + | LSU ribosomal protein L16p (L10e) rpmC 69328 - 69534 + | LSU ribosomal protein L29p (L35e) rpsQ 69560 - 69820 + | SSU ribosomal protein S17p (S11e) rplN 69845 - 70213 + | LSU ribosomal protein L14p (L23e) rplX 70292 - 70597 + | LSU ribosomal protein L24p (L26e) TERM 72 70593 - 70577 - f 70 -2.2 -5.21709 | opp_overlap 70577 CGTTACAGCAAAAAA TCAGGC GAAGT GCTTGA TTAATCACGAAGGAA rplE 70621 - 71163 + | LSU ribosomal protein L5p (L11e) rpsN.1 71179 - 71364 + | SSU ribosomal protein S14p (S29e) TERM 73 71409 - 71373 - f 80 -10.4 -3.01831 | opp_overlap 71373 71372 71375 71378 71380, overlap 71375 71380 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG GTTAATTAAAACGGT TERM 74 71373 - 71409 + F 78 -10.4 -2.60194 | opp_overlap 71373 71375 71380, overlap 71372 71375 71378 71380 TTGGTAAAAATATGA CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG GTTAATTAAAACGGT TERM 75 71459 - 71447 - f 73 -7.7 -3.84712 | TAAGCTGATACCAAA GTCCT TTA AGGAC AACATTAACTAGTAA rpsH 71515 - 71913 + | SSU ribosomal protein S8p (S15Ae) rplF 72116 - 72652 + | LSU ribosomal protein L6p (L9e) rplR 72757 - 73113 + | LSU ribosomal protein L18p (L5e) TERM 76 73364 - 73348 - g 73 -9.5 -3.16564 | overlap 73340 AAAAACATGATCGAA GTACCAA TGG TTGGTAC AACAATCCCTCACGA rpsE 73132 - 73626 + | SSU ribosomal protein S5p (S2e) rpmD 73641 - 73823 + | LSU ribosomal protein L30p (L7e) rplO 74038 - 74478 + | LSU ribosomal protein L15p (L27Ae) secY 74495 - 75799 + | Preprotein translocase secY subunit TERM 77 75797 - 75832 + F 70 -4.2 -4.66163 | gap 1, opp_overlap 75802 75804 75806, overlap 75802 75803 75806 ATGAATACAGCAGAA TAGAATACA-GGTTGAC ATT GTCAACCTTCTATTTTG TTTTTAAATGACAAT TERM 78 75802 - 75827 + F 79 -4.1 -5.2853 | gap 1, opp_overlap 75802 75804 75806, overlap 75797 75803 75806 TACAGCAGAATAGAA TACA-GGTTGAC ATT GTCAACCTTCTA TTTTGTTTTTAAATG TERM 79 75824 - 75804 - f 72 -8.3 -3.46859 | opp_overlap 75803 75802 75797 75806, overlap 75802 75806 CAGCAGAATAGAATA CAGGTTGAC ATT GTCAACCTT CTATTTTGTTTTTAA TERM 80 75822 - 75806 - f 86 -10.9 -3.29569 | opp_overlap 75803 75802 75797 75806, overlap 75804 75802 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT TERM 81 75806 - 75822 + F 100 -10.9 -4.1922 | opp_overlap 75806 75804 75802, overlap 75803 75802 75797 GCAGAATAGAATACA GGTTGAC ATT GTCAACC TTCTATTTTGTTTTT adk 75949 - 76587 + | Adenylate kinase TERM 82 76625 - 76589 - f 74 -6.2 -4.51765 | gap 1, opp_overlap 76589 76581 76591 76598, overlap 76580 76590 76592 76598 TAGAACTCAAATAAA TTAT-ACTAATCTACTT GCAT AAGTAGATTAGTAATGA TATACTAGTTTAGTC TERM 83 76622 - 76590 - f 73 -8.8 -3.29975 | gap 1, opp_overlap 76589 76581 76591 76598, overlap 76580 76589 76592 76598 AGAACTCAAATAAAT TATACTAATCTACTT GCAT AAGTAGATTAGTA-A TGATATACTAGTTTA TERM 84 76591 - 76622 + F 78 -10.4 -2.69202 | opp_overlap 76580 76590 76589 76592 76598, overlap 76589 76581 76598 GAACTCAAATAAATT ATACTAATCTACTT GCAT AAGTAGATTAGTAA TGATATACTAGTTTA TERM 85 76621 - 76592 - f 93 -13.9 -3.20126 | opp_overlap 76591 76589 76581 76598, overlap 76580 76590 76589 76598 AACTCAAATAAATTA TACTAATCTACTT GCAT AAGTAGATTAGTA ATGATATACTAGTTT infA 76705 - 76923 + | Translation initiation factor 1 rpmJ 76949 - 77065 + | LSU ribosomal protein L36p TERM 86 77293 - 77275 - g 71 -7.4 -3.93288 | GTGGATGCAATCAAA GTTGAAGG TGA CCTTCGAC GTGAAGTAAACATGA rpsM 77083 - 77448 + | SSU ribosomal protein S13p (S18e) rpsK 77466 - 77849 + | SSU ribosomal protein S11p (S14e) TERM 87 78367 - 78357 - g 87 -3.2 -5.72053 | overlap 78360 78362 GAAGGAAACAAAAAA GATG ATG CACC TGTGGGTACATTGGC rpoA 77895 - 78833 + | DNA-directed RNA polymerase alpha subunit rplQ 78848 - 79234 + | LSU ribosomal protein L17p TERM 88 79357 - 79407 + F 100 -9.3 -4.92791 | ATTGTTAATATGTAA CGCTTGTTTATGAAAGGTATTTA AGCTA TAGAAACTTTTTATAAGCAGGCG TTTTGTTGTATTATG TERM 89 79616 - 79604 - f 76 -4.1 -5.03747 | overlap 79605 AAATGTCCGAAAAAA CTTGC ATC GCAAA CAGATGCTCAAACTA TERM 90 80029 - 80015 - f 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 91 82312 - 82293 - f 91 -12.2 -3.66803 | opp_overlap 82292 82291 CGGCAAGAGGGCAAA CCGAAGTG TTTA CACTTCGG GGTTGTAGGACTGCG TERM 92 83004 - 82971 - f 71 -8.9 -3.03412 | overlap 82970 82993 CAATCTCAGATAAAC TCCGAATGCCAACGA GATA TCATCGGCAGTCAGA CTGCGAGTGCTAAGA TERM 93 86229 - 86260 + F 100 -10.4 -4.43012 | opp_overlap 86236, overlap 86227 86236 GGCCGCCGGTATACT TGAAAAACAAGGTT TGTA AACCTTGTTTTTTG TTTTGATCTTAGGCT TERM 94 86236 - 86253 + F 100 -8.5 -5.83211 | opp_overlap 86236, overlap 86227 86229 GGTATACTTGAAAAA CAAGGTT TGTA AACCTTG TTTTTTGTTTTGATC TERM 95 86253 - 86236 - f 89 -8.5 -4.64766 | opp_overlap 86227 86229 86236 GGTATACTTGAAAAA CAAGGTT TGTA AACCTTG TTTTTTGTTTTGATC Spy49_0078 87367 - 87615 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Spy49_0079 87670 - 87882 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 96 87881 - 87865 - f 70 -4.5 -4.70659 | TGCCAGACCGAAAAA CAAACTA TAA TAGTTTA AAAGGACTTTGCAAG TERM 97 88381 - 88367 - g 70 -3.6 -4.91109 | CGTTTATTACAAAAA TTCTCT GCG AAAGAA TTAGAGATTGTAGAT adrR 87992 - 88435 + | Putative repressor protein TERM 98 88671 - 88640 - g 73 -2.4 -5.33985 | gap 1, opp_overlap 88649 88661, overlap 88643 88649 88659 GCTAAAAAAAATAAA GAC-GGTAAACAATT AAG AATTGCTTACTTGCC GCAGCAAGTAGCTAG adrC 88439 - 89158 + | ABC transporter adrB 89151 - 89966 + | Putative ABC transporter TERM 99 89976 - 90000 + T 100 -15.9 -4.57482 | opp_overlap 89976 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC TERM 100 90000 - 89976 - T 100 -15.9 -5.29445 | opp_overlap 89976 TTTTAATAAGAAAAA TCCTCACATGT TTA ACATGTGAGGA TTTATTTATAAATGC Spy49_0083c 90389 - 90006 - | Putative histidine triad (HIT) protein TERM 101 90176 - 90203 + g 100 -14.2 -3.36878 | CTGAAATGGGAAGGT GCCGCTCTAGCT TAGC AACTAGAGCGGC TTGTAAGTCGATGAG TERM 102 90413 - 90426 + r 75 -8.1 -3.81259 | opp_overlap 90413 CTCCTTATGAAAAAA CGAGC CAGA GCTCG TTTAATCGGTTATCT TERM 103 90426 - 90413 - R 90 -8.1 -5.14563 | opp_overlap 90413 CTCCTTATGAAAAAA CGAGC CAGA GCTCG TTTAATCGGTTATCT tyrS 91696 - 90440 - | Tyrosyl-tRNA synthetase TERM 104 91883 - 91901 + G 85 -2.5 -5.86465 | gap 1 GGTGCTATTACGTAC GTTGAGAC TACT GTCT-AAC TTTTTTTATATTGTT pbp1b 91800 - 94100 + | Multimodular transpeptidase-transglycosylase TERM 105 94185 - 94225 + F 77 -4.8 -5.1104 | opp_overlap 94185 94187, overlap 94187 TCCAGTTAGGAAGAA CAGCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGCTC TTTTTGTGTCTATTT TERM 106 94187 - 94223 + F 78 -7.4 -4.15325 | opp_overlap 94187 94185, overlap 94185 CAGTTAGGAAGAACA GCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGC TCTTTTTGTGTCTAT rpoB 94364 - 97930 + | DNA-directed RNA polymerase beta subunit rpoC 98048 - 101662 + | DNA-directed RNA polymerase beta subunit TERM 107 101673 - 101688 + F 85 -6.8 -5.38951 | opp_overlap 101673 AATAATCTCATGAAA GAGTCC TTAG GGGCTC TTTTTTGTCTGAGTT Spy49_0089 101814 - 102179 + | Putative DNA binding protein TERM 108 102209 - 102235 + F 95 -6.8 -5.95539 | opp_overlap 102204 102209 CAAAATAAGTTAAAA GAAAATATCA CTTCTTC TGATATTTTC TTTTTTTGTTTACGA TERM 109 102235 - 102209 - f 74 -6.8 -4.41817 | opp_overlap 102209, overlap 102204 CAAAATAAGTTAAAA GAAAATATCA CTTCTTC TGATATTTTC TTTTTTTGTTTACGA TERM 110 102303 - 102293 - g 70 -5.4 -4.33105 | opp_overlap 102285, overlap 102294 CAAGCATTAGCAAAA GCTA TTC TAGC AAAAGCTGAACAGGT TERM 111 102353 - 102365 + G 91 -6.3 -5.42259 | opp_overlap 102353 ATTTTGCCAAGAGCA GATCA ATA TGATC TTTTTTTACGAATAG comYA 102272 - 103210 + | Putative ABC transporter subunit ComYA TERM 112 103311 - 103297 - f 71 -5.7 -4.56597 | opp_overlap 103282 103301 103304, overlap 103301 TTGCTTTTTTAAAAA GAAGC CAGTT GCTTC AGCTAGATTATGTTC TERM 113 103728 - 103738 + G 73 -8.2 -3.81575 | TTGAAACTCTATAGT CGGC TAA GCCG TTATCCTTTTTTAGG comYB 103305 - 104180 + | Putative competence protein, ABC transporter subunit comYC 104182 - 104508 + | Putative competence protein Spy49_0093 104483 - 104911 + | Competence protein Spy49_0094 104868 - 105152 + | hypothetical protein comYD 105145 - 105579 + | Putative competence protein Spy49_0096 105599 - 105889 + | hypothetical protein Spy49_0097 105987 - 106940 + | Adenine-specific methyltransferase TERM 114 106933 - 106944 + F 77 -3 -5.58179 | GGAAACTGAGTAATG TCAA TTAA TTGA TTTTTTGTTATAATA TERM 115 107010 - 107000 - g 75 -5.4 -4.6644 | AAGAGAGGTTAAAAA TGTC AAA GACA ATTGCAATTAATGCA ackA 106999 - 108195 + | Acetate kinase TERM 116 108210 - 108198 - f 89 -7.7 -5.2894 | AAATACAAAATAAAA GAGAC TAA GTCTC AATAGATTAACCAAG TERM 117 108221 - 108245 + F 100 -9.4 -5.28826 | opp_overlap 108221 GTCTCAATAGATTAA CCAAGTAAGG CAACA CTTTACTTGG TTTTTTATGAGGTTT Spy49_0099 108381 - 108623 + | hypothetical protein proC 109542 - 108772 - | Pyrroline-5-carboxylate reductase TERM 118 109377 - 109365 - G 71 -6.3 -4.20868 | TGCCTAAAATAACAA GATCA ACC TGATC AATAAGGTCTTGGTG pepA 110657 - 109590 - | Putative glutamyl-aminopeptidase TERM 119 110782 - 110758 - H 89 -7.2 -5.35815 | overlap 110760 CACAGCAAAGAAAAA TCCCAGAGAC TAGAG ATCTCTGGAA GAAGTGTTTGTCTTT Spy49_0103 112439 - 112732 + | hypothetical protein TERM 120 112803 - 112825 + G 70 -9.8 -2.60206 | overlap 112802 112801 112805 GGTGTTATTTTTTAC GGCAGACTGG TGT CCAGACTGTC AATTTATTTATCCTA trx.1 112729 - 113046 + | Putative thioredoxin Spy49_0105 113064 - 113708 + | tRNA binding domain protein TERM 121 113740 - 113759 + F 95 -8.6 -5.66338 | opp_overlap 113740 ATGACCAGAAAAAAA GGATTAGG AGCC CCTAGTCC TTTTTTCTTATGTTT TERM 122 113759 - 113740 - f 89 -6.4 -5.67967 | opp_overlap 113740 ATGACCAGAAAAAAA GGATTAGG AGCC CCTAGTCC TTTTTTCTTATGTTT ssb 113842 - 114237 + | Single-stranded DNA-binding protein Spy49_0108c 115138 - 114497 - | Deoxyadenosine kinase/Deoxyguanosine kinase Spy49_0109c 116135 - 115158 - | putative transcriptional regulator TERM 123 116035 - 116011 - G 79 -9.3 -3.86944 | TCCATAACCACCAAA CCAGCACCAAA TTC TTTGGCGATGG TACGAAAGGCAGAGT Spy49_0110c 116994 - 116122 - | 33 kDa chaperonin TERM 124 116806 - 116823 + g 70 -3.4 -4.8622 | opp_overlap 116789, overlap 116789 ACCAATCACTTTGAC GGTGAT TTTACT ATCGCC TTTTTGATTAGCCGC nra 118655 - 117120 - | Regulatory protein cbp 119085 - 121319 + | Putative collagen binding protein TERM 125 121824 - 121802 - g 70 -5.7 -4.40221 | gap 1 AAATCAAAGGGAAAA TCTCAACTCT ATTA AGAGT-GAGA GGAATTTAAAAAAAT lepA-1 121312 - 121833 + | Putative signal peptidase I TERM 126 121946 - 121936 - g 84 -6.8 -4.90471 | AGTCAAAATATAAAA GCTG AGA CAGC AGGAGTGATTGATGG Spy49_0114 121855 - 122889 + | hypothetical protein TERM 127 123540 - 123520 - g 73 -5.6 -4.56729 | AGTAAAAGATCAAAA CAATTTAA ACCTG TTAAATTG AAGCATCATACAAAG TERM 128 123565 - 123581 + G 71 -3.8 -4.91109 | ACAAAGTTCGTTGCT TTTTCA ACGTG TGAAAA TTTTTCTACTGACAA Spy49_0116 122905 - 123630 + | NPQTN specific sortase B Spy49_0117 123665 - 124234 + | hypothetical protein TERM 129 124295 - 124326 + T 100 -11.7 -5.01497 | opp_overlap 124291 AATGAAACTTATTGA CATCTCCACAGTC TTGCTT GACTTTGGAGATG TTTTTCTATGCTGAT msmR 125599 - 124394 - | Transcriptional regulator, AraC family TERM 130 124427 - 124458 + g 70 -5.4 -4.38712 | TTTAGCAAGATAGTC TTTTGAAGAAATAC CCGT GTATTTTTTAAAAA TTTTATGAAAATGGG TERM 131 126015 - 126034 + G 93 -9.4 -4.74598 | GCTATAAGTTAAGCT TCCTGTTA TCCT TAACAGGA TTTATTTTAGGTTTA TERM 132 127229 - 127202 - g 74 -4.8 -4.75309 | overlap 127204 127220 TTAAATTTAAGAAAA GACCTTGAGGCA AAGT TACCACAAGGTA GTACTCAAGGTGCTA TERM 133 127227 - 127204 - g 73 -7.4 -3.98064 | overlap 127202 127220 AAATTTAAGAAAAGA CCTTGAGGCA AAGT TACCACAAGG TAGTACTCAAGGTGC prtF 125984 - 129466 + | Fibronectin binding protein TERM 134 129517 - 129496 - T 70 -4.3 -4.76312 | opp_overlap 129496 129497, overlap 129497 GACAATAGCGAAAAA GGGTCCACT TATT AGTGGGCCT CTTTTTCTGGAATCG TERM 135 129496 - 129518 + T 83 -6.3 -4.85599 | gap 1, opp_overlap 129496 129497, overlap 129497 GACAATAGCGAAAAA G-GGTCCACT TATT AGTGGGCCTC TTTTTCTGGAATCGA TERM 136 129497 - 129516 + T 87 -10 -4.05067 | opp_overlap 129496 129497, overlap 129496 ACAATAGCGAAAAAG GGTCCACT TATT AGTGGGCC TCTTTTTCTGGAATC TERM 137 129690 - 129661 - T 100 -10.2 -5.24416 | gap 1, opp_overlap 129683 129684 CAAGCATAATAAAAA GAGTCTGAG-CAA TCATG TTGTCTCAGACTC TGACTGTATTATGCA Spy49_0120c 130396 - 129731 - | hypothetical protein TERM 138 131193 - 131204 + G 75 -5.8 -4.70887 | opp_overlap 131193 GCAAAAAGGGATTAA GGTG CATA CACC TTTGTTTGTTGCTAC atoE 130750 - 132156 + | Short-chain fatty acids transporter Spy49_0122c 133142 - 132231 - | Putative transcriptional regulator Spy49_0123 133263 - 134447 + | Acetyl-CoA acetyltransferase atoD.2 134459 - 135118 + | Acetate CoA-transferase alpha subunit Spy49_0125 135121 - 135768 + | Butyrate-acetoacetate CoA-transferase, beta subunit Spy49_0126c 136570 - 135890 - | Putative transcriptional regulator Spy49_0127 136745 - 137110 + | Translation initiation inhibitor sloR 137147 - 138166 + | Putative regulatory protein Spy49_0129 138620 - 138940 + | hypothetical protein TERM 139 139090 - 139074 - g 77 -8 -4.1552 | overlap 139061 GATGCTTTTAACAAA GGCAAC GTCAA GTTGCC ACAAATCGTCCAATA TERM 140 140220 - 140232 + G 71 -6.9 -3.98291 | TTAGCTATTTCAGTA GCCCT ATG GGGGC TTATTTACGGTTCTT TERM 141 140413 - 140425 + G 78 -4.1 -5.27476 | overlap 140409 CGGCCTATACGTCAA GTCTA GCT TGGAC TTTTATTTTATTAGG ntpI 138930 - 140930 + | V-type Na+-ATPase subunit I ntpK 140932 - 141411 + | V-type Na+-ATPase subunit K TERM 142 141451 - 141441 - f 71 -3.2 -5.07567 | CTAGATTTTAAAAAA CGGT GAC ACCA CTAACACTATCAAAA ntpE 141479 - 142063 + | Putative V-type Na+-ATPase subunit E ntpC 142079 - 143077 + | V-type sodium ATP synthase subunit C ntpG 143074 - 143394 + | V-type sodium ATP synthase subunit G TERM 143 143775 - 143803 + G 100 -14.7 -3.92641 | opp_overlap 143781 TCAGGGATCGGTCCA GGAGAACCAGTAG TGA CTACTGGTTGTCC TTTGTCGGTCGAGTT TERM 144 143797 - 143781 - g 80 -10.9 -3.40522 | opp_overlap 143775 ATCGGTCCAGGAGAA CCAGTAG TGA CTACTGG TTGTCCTTTGTCGGT TERM 145 144768 - 144784 + G 70 -8.7 -3.35224 | overlap 144766 GCCATCGGCGCGGTT TCTCCTC CCG GAGGGGA TATTTCAGAGCCTGT ntpA 143595 - 145370 + | V-type ATP synthase alpha chain TERM 146 146274 - 146262 - g 72 -3.3 -5.03314 | TTGATCGGGAAAAAA GGGTC AGT GACTC AAATTCCTATTTTAA ntpB 145371 - 146786 + | V-type sodium ATP synthase subunit B ntpD 146831 - 147457 + | Putative V-type Na+-ATPase subunit D TERM 147 147508 - 147545 + T 74 -5.6 -4.66609 | gap 1, opp_overlap 147508 TTAAGTAGTAAAAAA GCAAGCCATCA-AAGGG ATTAA CCTAACTGATGGCTTGC TTTTTAAGTAGCGTG TERM 148 147545 - 147508 - T 85 -6.5 -5.2189 | gap 2, opp_overlap 147508 TTAAGTAGTAAAAAA GCAAGCCATCAA--AGG GATTAA CCTAACTGATGGCTTGC TTTTTAAGTAGCGTG Spy49_0138c 148839 - 147577 - | Putative toxic anion resistance protein TERM 149 147747 - 147760 + g 71 -5.3 -4.4891 | CATGATCAATCGCCG CAATG ATCC CATTG TTTTGTGCTACTAAA Spy49_0139c 149730 - 148852 - | hypothetical protein purA 150168 - 151460 + | Adenylosuccinate synthetase TERM 150 151479 - 151501 + F 80 -7 -4.64144 | opp_overlap 151479 GTCTAGTATGACAAA GAGTTGGATA GCG TTTCCAGCTC TTTTTACCGCTTGTT TERM 151 152274 - 152262 - g 72 -3.4 -5.09245 | opp_overlap 152262 CTAAAACGACAAAAA CCAA GCAAG TTGG TTTTGTAGGTGGTAT Spy49_0142 151787 - 152830 + | Putative ABC transporter TERM 152 152845 - 152874 + F 100 -10.1 -4.72986 | opp_overlap 152844 AAACTGTACAATACC GTCCAGAGTCG TCACGAAC CGACTTTGGAC TTTTTAATAAAGGTG nusG 152988 - 153542 + | Transcription antitermination protein NusG TERM 153 153582 - 153552 - f 73 -8.4 -3.55071 | opp_overlap 153547 153552 CTATAGGCTCTCAAA GGTTTGATGGTA TAAGTAT TACCATCAGACC TTTTTTAGTTGGAAG TERM 154 153552 - 153582 + F 100 -10.6 -5.26875 | opp_overlap 153552, overlap 153547 CTATAGGCTCTCAAA GGTTTGATGGTA TAAGTAT TACCATCAGACC TTTTTTAGTTGGAAG TERM 155 154477 - 154459 - g 74 -6 -4.43844 | opp_overlap 154473 CCATCAGGGACAAAA CAAGGATA TTT TAGCCTTG TCAGAGGTCACTTTT TERM 156 154802 - 154786 - g 72 -4.4 -4.67048 | CGATGCTAAAAGAAA GTCAAC GATTG GTCGAC AAGAAAACGGTCTTT nga 153917 - 155272 + | Nicotine adenine dinucleotide glycohydrolase (NADGH) Spy49_0145 155277 - 155762 + | hypothetical protein TERM 157 156176 - 156166 - g 73 -5.4 -4.58663 | AGTACTTGCTAAAAA TGGT GAA ACCA TTGAAAATTTTGTTC slo 155786 - 157501 + | Thiol-activated cytolysin TERM 158 157618 - 157588 - f 100 -12.8 -4.48664 | opp_overlap 157588 CAAATACAGAAGAAA GCTTGTCTATGA GATACCT TCATAGACAAGC TTTTTTGATATACTA TERM 159 157588 - 157618 + F 100 -13.5 -5.23316 | opp_overlap 157588 CAAATACAGAAGAAA GCTTGTCTATGAG ATACC TTCATAGACAAGC TTTTTTGATATACTA Spy49_0147 157756 - 158184 + | hypothetical protein TERM 160 158201 - 158229 + F 93 -7.5 -5.45726 | opp_overlap 158201 AAAATGAATTAAAAA CAGCCTTTAAC TGCTAAT GTGAAAGGCTG TTTTTTTAGGATATG TERM 161 158229 - 158201 - f 88 -7.5 -4.97312 | opp_overlap 158201 AAAATGAATTAAAAA CAGCCTTTAAC TGCTAAT GTGAAAGGCTG TTTTTTTAGGATATG TERM 162 158320 - 158299 - f 85 -6.6 -5.36441 | opp_overlap 158299 CGGCCACACAAAAAA GCAATAGC TTTGAC GCCATTGC TTTTCTAGCATAATC Spy49_0148 158408 - 158701 + | hypothetical protein TERM 163 158943 - 158916 - T 100 -12 -4.88407 | opp_overlap 158914 158916 TTAGCCAATCAAAAA GCCTAAGGCTGC TTAT GCAGTCCTAGGC TTTTCATAACCGTAG TERM 164 158916 - 158943 + T 100 -12 -4.26076 | opp_overlap 158916, overlap 158914 TTAGCCAATCAAAAA GCCTAAGGCTGC TTAT GCAGTCCTAGGC TTTTCATAACCGTAG Spy49_0149c 159165 - 158998 - | hypothetical protein Spy49_0150c 159676 - 159350 - | hypothetical protein TERM 165 159429 - 159395 - G 84 -8 -4.8066 | AAGATAATTTAAAAA GCACCAAAACCAATTA GAA CAATCATTTTTGGTGC TAGAAGTTTCACTCT TERM 166 160061 - 160075 + G 74 -5 -4.78149 | AGGTTAGCAGATCAC GCTTTT TTG AAGAGC TTTTTGGCTTGTGCA metB 159929 - 161299 + | Cystathionine beta-lyase TERM 167 161281 - 161292 + F 70 -4.4 -4.75356 | ATTGGCCGATTTTGA GCAA GCAC TTGC TTTTTAAGTCTATTT TERM 168 161309 - 161342 + F 100 -10.3 -5.52096 | overlap 161310 TTTTAAGTCTATTTG TCCAGATTGGCTCTG TTTA CAGAGCAAGTCTGGC TTTTTTATTAGCTTT TERM 169 161310 - 161341 + F 100 -13.8 -3.88817 | overlap 161309 TTTAAGTCTATTTGT CCAGATTGGCTCTG TTTA CAGAGCAAGTCTGG CTTTTTTATTAGCTT leuS 161510 - 164011 + | Leucyl-tRNA synthetase TERM 170 164106 - 164129 + F 100 -14 -4.83593 | opp_overlap 164106 ACTCATCTAGAAAAA CCACAAGAAC GAAG GTTCTTGTGG TTTTTAATCGTTGTT TERM 171 164129 - 164106 - f 100 -14 -4.88067 | opp_overlap 164106 ACTCATCTAGAAAAA CCACAAGAAC GAAG GTTCTTGTGG TTTTTAATCGTTGTT TERM 172 164375 - 164344 - g 72 -8.8 -3.53811 | CCTAGCTCCCCTAAA CTGGTTCTCGCAAA ATAT TTTGCAAAACCCAG CGTTCTTTGTAGGTC TERM 173 165026 - 165042 + G 73 -7.3 -3.96696 | opp_overlap 165024, overlap 165033 165036 ATTTTCCATGATACT GTTGTTG CAT CAGCAAC TTTGATGTTGGTCTT Spy49_0153 164318 - 165751 + | Transport protein SgaT, putative Spy49_0154 165822 - 166100 + | PTS system, IIB component Spy49_0155 166223 - 166708 + | PTS system, IIA component Spy49_0156 166799 - 167461 + | Hexulose-6-phosphate synthase Spy49_0157 167466 - 168329 + | Hexulose-6-phosphate isomerase araD 168331 - 169035 + | L-ribulose-5-phosphate 4-epimerase TERM 174 169109 - 169131 + F 93 -9.9 -4.1899 | TGTTAATCATTGTTT GGGCAAGTC CTTTT GACTTGTCC TTTTCGATGAACTGG TERM 175 170417 - 170435 + G 80 -2.4 -5.65513 | overlap 170419 TGTAAGGCGCTCGTT TACCGTAA AGC TTATGGGA TTTTTTTAGTTAATC Spy49_0159 169361 - 171007 + | Putative transcriptional regulator TERM 176 171230 - 171212 - f 73 -9 -3.19568 | overlap 171211 TCATTGACAAGAAAG TCTATACT TAA AGTATAGA AACGAAGAGCAAATT Spy49_0160 171261 - 172352 + | hypothetical protein TERM 177 172759 - 172794 + F 90 -13.6 -2.96638 | opp_overlap 172773, overlap 172751 172752 TAATTGTGTAGAGCT ACTTTGGTGAAATATT GGCT AATATTTCACCAAAGC TATGTCACTATTTCA opuAA 172842 - 174038 + | L-proline Glycine Betaine ABC transport ATP- binding protein proV TERM 178 174278 - 174267 - g 89 -5.8 -5.4505 | opp_overlap 174241 CTTGCTAAGAAAAAA TGGC CTTT GCCA ACCTTTACCTTGTTA TERM 179 174914 - 174903 - g 81 -5.8 -5.11112 | overlap 174909 AAACCTCAAGAAAAA GCCA AAGC TGGC AAAACCAATAAATGG opuABC 174054 - 175781 + | L-proline Glycine Betaine ABC transport system permease protein proW TERM 180 175811 - 175830 + F 93 -8.6 -4.75174 | opp_overlap 175811 ATAGCAAACAGAGAA GTCTAGGA ATTT TCCTAGGC TTTTTAGGTTAACTA TERM 181 176649 - 176617 - g 80 -7.9 -4.32046 | overlap 176622 GCCTCAAAAATGAAA GAAAACTTGATCA ATGACCG TGACCAAGCTTTC CTATCTAAAACGCTC TERM 182 176644 - 176622 - g 74 -4.2 -5.10516 | overlap 176617 AAAAATGAAAGAAAA CTTGATCA ATGACCG TGACCAAG CTTTCCTATCTAAAA polA 175912 - 178554 + | DNA polymerase I Spy49_0164 178732 - 179187 + | CoA-binding domain protein Spy49_0165 179239 - 179706 + | Ferric transport regulator protein TERM 183 179748 - 179721 - f 77 -8.6 -3.61268 | opp_overlap 179725, overlap 179713 179725 GAGTTAACCCTTAAA TAAAGGCATTAT AAAT ATAGTGCCTTTA CAAATCAAAAACCCC Spy49_0166 179862 - 180161 + | M protein trans-acting positive regulator-like protein TERM 184 181050 - 181060 + G 74 -4 -5.01823 | overlap 181057 AAGACATATGGCATG CTTA CTA TAAG TTTTCTTATTCTTAT Spy49_0167 180383 - 181717 + | hypothetical protein TERM 185 182024 - 182003 - g 70 -9.5 -2.67441 | opp_overlap 181991, overlap 181991 182000 182008 TAAGTCATTAGACTA TCGAATGGC TTCT ACCATTCGA CATAATAGAGCTAGA Spy49_0168 181710 - 182090 + | hypothetical protein TERM 186 182298 - 182320 + G 95 -11.4 -4.74706 | opp_overlap 182295 182292 182298 TATCATTAACAACGA GAGAGAATCA GAT TGGTTCTCTC TTTTTGGATGTTCAA Spy49_0169 182234 - 182443 + | hypothetical protein Spy49_0170c 182785 - 182570 - | Transposase Spy49_0173c 183720 - 183427 - | hypothetical protein TERM 187 183531 - 183576 + Gg 77 -4.8 -4.93316 | gap 1, opp_overlap 183540, overlap 183533 183540 TTATCTCAAATTGAG CAT-GACGAAGTGCGCTCCCA TGTCC TGGGAACGCACTTTCTCCATA TTTTTCATATTCTTG TERM 188 183533 - 183574 + Gg 73 -7.4 -4.06487 | gap 1, opp_overlap 183540, overlap 183531 183540 ATCTCAAATTGAGCA T-GACGAAGTGCGCTCCCA TGTCC TGGGAACGCACTTTCTCCA TATTTTTCATATTCT TERM 189 183540 - 183566 + Gg 93 -12.3 -4.02468 | opp_overlap 183540, overlap 183533 183531 ATTGAGCATGACGAA GTGCGCTCCCA TGTCC TGGGAACGCAC TTTCTCCATATTTTT TERM 190 183566 - 183540 - Gg 95 -14.5 -3.23395 | opp_overlap 183540 183533 183531 ATTGAGCATGACGAA GTGCGCTCCCA TGTCC TGGGAACGCAC TTTCTCCATATTTTT Spy49_1061c 183438 - 183638 + | hypothetical protein TERM 191 184645 - 184623 - fH 71 -7.7 -3.54424 | overlap 184637 TCCCATTTGCTTAAA CAGGCCTTG AAAGA CAATGCCTG AGCCACTGGTTATCA TERM 192 185953 - 185981 + G 70 -8.7 -3.28173 | opp_overlap 185968, overlap 185951 185954 GAAGTGGAAAGCCTT GCTGCTGCCGAAG AAG CTGCGGCGGCGGG TGTTGATATTATCAT TERM 193 185954 - 185980 + G 81 -12.2 -2.56181 | opp_overlap 185968, overlap 185953 185951 AAGTGGAAAGCCTTG CTGCTGCCGAAG AAG CTGCGGCGGCGG GTGTTGATATTATCA Spy49_0176 185332 - 186204 + | Quinolinate phosphoribosyltransferase TERM 194 186507 - 186551 + T 100 -15.4 -4.62054 | opp_overlap 186504 186513, overlap 186508 186513 TTGGACAAATAATTA TTGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAATCCTTTTAG TTTTGCTTTGATTCG TERM 195 186508 - 186550 + T 100 -16.7 -3.36148 | opp_overlap 186504 186513, overlap 186507 186513 TGGACAAATAATTAT TGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAATCCTTTTA GTTTTGCTTTGATTC TERM 196 186545 - 186513 - T 91 -12.2 -3.74658 | opp_overlap 186508 186507 186513, overlap 186504 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAATCC TTTTAGTTTTGCTTT TERM 197 186513 - 186545 + T 100 -14.4 -4.74084 | opp_overlap 186513 186504, overlap 186508 186507 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAATCC TTTTAGTTTTGCTTT Spy49_0178c 187311 - 186865 - | Putative transposase, IS861 TERM 198 187756 - 187781 + r 73 -7.7 -3.75665 | overlap 187757 TTGAGATCGGATTCT GCCATATCAAA CTTT TTTGATATGGA TTTAATGGACTCTCC TERM 199 187757 - 187780 + r 83 -11.2 -2.85078 | overlap 187756 TGAGATCGGATTCTG CCATATCAAA CTTT TTTGATATGG ATTTAATGGACTCTC TERM 200 187898 - 187855 - R 93 -7.6 -5.63504 | gap 1, opp_overlap 187868, overlap 187857 AATTTCATAAAAAAA TAGCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC-A GTTCAAGGGCTATTT TERM 201 187897 - 187857 - R 100 -12.7 -4.45201 | opp_overlap 187868, overlap 187855 TTTCATAAAAAAATA GCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC AGTTCAAGGGCTATT Spy49_0180c 188796 - 187933 - | hypothetical protein TERM 202 189070 - 189059 - g 79 -5.8 -4.91977 | TATCAAAACAGAAAA GCAC ACCG GTGC ACGCTTGGGCGAAAT tgt 189015 - 190157 + | tRNA-guanine transglycosylase TERM 203 190175 - 190210 + F 100 -9.8 -5.71712 | AAAAATGCTATGATC CTGGAACTGAGGGCGA TCTA TCGTCTTTGGTTTCAG TTTTTTTGTATAGAC Spy49_0182 190374 - 190685 + | hypothetical protein bioY 190689 - 191228 + | Biotin transporter bioY TERM 204 191260 - 191291 + F 100 -16 -4.76041 | opp_overlap 191262 TTAAGTTGTGTTGAA CAGGTCTTGGCAGA TTTA TCTGCTAGGACCTG TTTTTGGTGGGTCTC Spy49_0184 191368 - 192147 + | hypothetical protein Spy49_0185 192147 - 192662 + | Cytosine deaminase Spy49_0186c 194496 - 193276 - | hypothetical protein TERM 205 193377 - 193365 - G 71 -6.3 -4.20932 | opp_overlap 193363 193365 AATACTGATTGAAAA GGTTA TGA TAACC TGTTTGATTCGTCGT TERM 206 193967 - 193977 + g 83 -3.2 -5.58179 | CTGCCTGATTGATAG GCTT CAA AGGC TTTTTTATTGTAGTC TERM 207 194650 - 194663 + H 71 -5.3 -4.4959 | AAAATGAAGCTATGC TCACT TGAA AGTGA TTTTACTTAGTTGGA speG 194908 - 195612 + | Exotoxin type G precursor TERM 208 195832 - 195843 + F 89 -7.2 -5.2112 | opp_overlap 195831 TTATTACGGTAAAGC GGCC TCAG GGCC TTTTTTCATGATATT TERM 209 196540 - 196550 + G 70 -5.4 -4.41047 | TATTGCCTTTCGCGT GTTC AAA GAAC TTTTGGTTAAAAAAT pgi 196067 - 197416 + | Glucose-6-phosphate isomerase TERM 210 197577 - 197530 - T 100 -18.1 -4.43309 | gap 1, opp_overlap 197537 197541, overlap 197534 CAAGGTTAAGTAAAA GCGATAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTAT-GC CAAATTTCAGATAAG TERM 211 197574 - 197534 - T 100 -18.6 -2.80479 | opp_overlap 197537 197541, overlap 197530 GTTAAGTAAAAGCGA TAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTA TGCCAAATTTCAGAT TERM 212 197537 - 197571 + T 100 -18.1 -3.32294 | opp_overlap 197534 197530, overlap 197541 AAGTAAAAGCGATAA TAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTA TTATGCCAAATTTCA TERM 213 197541 - 197567 + T 100 -14.5 -4.30987 | opp_overlap 197534 197530, overlap 197537 AAAAGCGATAATAAA GTGCGCTTCCA GAACA TGGGAGCGCAC TTTATTATGCCAAAT Spy49_0189c 199272 - 197875 - | Putative regulatory protein-RofA related TERM 214 199160 - 199141 - G 72 -9.4 -3.08088 | AAATTGTCGAAGATA CTGCTTTA TTTT TAAAGCAG TCAAAGTTGTTTGAG TERM 215 199530 - 199505 - H 86 -8.3 -4.81249 | opp_overlap 199505 TTTTAAATTTAAAAA CCTAACCAGCC GGTT AACTGGTCAGG TTTAAACCAGGGAGG TERM 216 199618 - 199635 + H 70 -4.1 -4.69464 | overlap 199619 AAACCTATTCTCCCA ACGGTTT AGGT AAACCGC TTTTTAGGATGTTTT TERM 217 199810 - 199793 - H 74 -3.5 -5.2112 | gap 1, opp_overlap 199793 199797, overlap 199797 AAGATGATGAAAAAA GAGATTCT CAA AGAA-CTC TTCTAGTCTTTACGA Spy49_0190 199964 - 200635 + | hypothetical protein TERM 218 200747 - 200691 - T 100 -15.5 -2.98761 | opp_overlap 200694 200708, overlap 200708 AGTAGGATGAAATGA CTTAAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTGTTT TCTCTAGTGCTTTGC TERM 219 200694 - 200744 + T 100 -26 -4.59027 | opp_overlap 200691 200708, overlap 200708 AGGATGAAATGACTT AAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTG TTTTCTCTAGTGCTT TERM 220 200730 - 200708 - T 100 -15 -5.1286 | opp_overlap 200694 200708, overlap 200691 TAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT TERM 221 200708 - 200730 + T 100 -15 -5.10601 | opp_overlap 200708 200691, overlap 200694 TAAAAACCATAAAAA TAAGGAGGGA TTT TCCCTCCTTA TTTTTATGGTTTTGT hasC.2 201633 - 200734 - | UTP--glucose-1-phosphate uridylyltransferase TERM 222 200948 - 200958 + g 76 -6.8 -4.36508 | AGTTGAACTTCATTG CCTG CAC CAGG TTCTTGTTTTTCTAA TERM 223 201143 - 201170 + g 77 -7.8 -4.27441 | gap 1 TCCTCGTGAGGAACC CTCATGACGGCAA TGG TTGCAG-CATGAG TTTCTTCATAGTCAT TERM 224 201659 - 201677 + r 71 -8.9 -3.04398 | opp_overlap 201662, overlap 201658 TCTTATTTTAGTGAC GAATGGC TTAAT GCCATTC ATTTTCAGAACGAAA gpdA 202682 - 201666 - | Glycerol-3-phosphate dehydrogenase NAD(P)+ TERM 225 202838 - 202852 + H 71 -5.6 -4.57543 | CAGGTGAGCTGTTGT CATGGC TTT GCCCTG TTCTTTTTAGTTATT TERM 226 203070 - 203053 - H 74 -2.1 -5.45726 | gap 1, overlap 203055 203056 GAGATTGCAAAAAAA TATGATGT AGA ACATC-TA GCAGGTCCTCAAGGT TERM 227 203080 - 203094 + H 76 -2.8 -5.47218 | CATCTAGCAGGTCCT CAAGGT ATG GTCTTG TTTTTTTAGCTAAAC Spy49_0193 203220 - 203426 + | Transcriptional regulator, MarR family Spy49_0194 203419 - 205125 + | Putative ABC transporter, ATP-binding protein Spy49_0195 205128 - 206912 + | ABC transporter, ATP-binding/permease protein TERM 228 206923 - 206940 + F 90 -8.4 -5.14563 | AATAGATGGTATCAG CTCCGC GTCTTA GCGGAG TTTTTTGGTGAACAA TERM 229 207618 - 207596 - g 79 -4.8 -5.08601 | TGATTTCAAGAAAAA CAACGGTTAT CGC AGATCCGTTG AAATGTGTGAGGAGT Spy49_0198 207105 - 207797 + | hypothetical protein TERM 230 207812 - 207834 + F 72 -2.6 -5.31545 | ATGGCATGATTAAAA GTGGTCCGTT TAA AGTTGACCGC TTTTTTGCTATTCTT TERM 231 207930 - 207942 + G 73 -7.7 -3.80841 | AATTCGTGGTTTCGA GCTTG TTT CAAGC TTTACTAATCCTGAT dut 207907 - 208365 + | Putative deoxyuridine 5-triphosphate nucleotidohydrolase TERM 232 208384 - 208410 + F 73 -8.8 -3.31726 | opp_overlap 208372, overlap 208388 AAATGCTTATGACAG CAGACCTATTCT TTA AGAGTGGGTTTG TCTTGTCTAGGGAAG TERM 233 208388 - 208406 + F 72 -6 -4.31164 | overlap 208384 GCTTATGACAGCAGA CCTATTCT TTA AGAGTGGG TTTGTCTTGTCTAGG TERM 234 209722 - 209709 - g 79 -6.7 -4.57569 | opp_overlap 209709 CTATGCTCCTAAAAA TGCCT TGCA AGGCA TTGATATCCCTCAAG radA 208402 - 209796 + | RadA-like DNA repair protein Spy49_0201 209985 - 210482 + | Carbonic anhydrase-related protein TERM 235 210500 - 210515 + F 100 -9 -5.93252 | AGTAGCCAAGTTGTA GAGCTG AATT CAGCTC TTTTTTATTTTTAAA Spy49_0202 210613 - 211323 + | hypothetical protein TERM 236 212095 - 212082 - g 73 -2.3 -5.28176 | GTTATTCAGAAAAAA GATGG TTAC CCAAC TTACAACTTTGCGGT gluS 211506 - 212996 + | Glutamyl-tRNA synthetase TERM 237 213015 - 213038 + F 86 -6.1 -5.39755 | opp_overlap 213015 213018 GTCACGACAACGAAA GATTGAAGA TTAAGT TCTTCAGTC TTTTTTATCGTTATC fasB 213347 - 214693 + | Putative histidine kinase TERM 238 214836 - 214846 + G 70 -5.4 -4.4078 | opp_overlap 214843 TGCTAATATGATATT TGAC AAA GTCA TTTTGATTGACCAAC Spy49_0205 214690 - 215973 + | Putative histidine kinase fasA 215977 - 216717 + | Response regulator FasA TERM 239 216773 - 216752 - f 77 -5.9 -4.77036 | opp_overlap 216750 216752 TTTTAGGACGAAAAA GCAACATTT CAGG AAATGATGC TCTTATTGAAACATT TERM 240 216941 - 216931 - f 71 -5.4 -4.52589 | opp_overlap 216931 216924 GCTCGGCAGACAAAA TGAC GAT GTCA GTTGTCTTTGTTTGG TERM 241 216993 - 217006 + F 100 -9.5 -5.1675 | opp_overlap 216992 216993 AAATCAGTATTAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA TERM 242 217006 - 216993 - f 73 -9.5 -2.89138 | opp_overlap 216993, overlap 216992 AAATCAGTATTAAAG CCCGG CTTG CCGGG TTTTTTGATAGGTAA rnpA 217257 - 217616 + | Ribonuclease P protein component TERM 243 217967 - 217951 - g 73 -2.2 -5.24129 | GCCCTTTACAAAAAA TATGGG GTTAA CCCTTA TGCTAGCCTCTTACC TERM 244 218381 - 218356 - g 89 -6.8 -5.1963 | opp_overlap 218356 GCCAATGAAGAAAAA GCACGCCGTC TTCGTG AACGTCGTGC TTGTAAAAAAGCAAT Spy49_0208 217600 - 218409 + | Membrane protein oxaA 1 precursor TERM 245 219011 - 219001 - g 70 -8.2 -3.7108 | ATTTGCAGATTGAAA CGCC AGA GGCG GGACGTGTGATTGGT Spy49_0209 218421 - 219335 + | R3H domain protein TERM 246 219349 - 219377 + F 90 -8.3 -5.36441 | AGATCCTAAAAAGAA TCTTTGGTAGTTA GTT TAGCTATCGAAGA TTTTTTGTATGGCCA rpmH 219650 - 219784 + | LSU ribosomal protein L34p TERM 247 219810 - 219832 + F 79 -5.6 -5.15117 | opp_overlap 219810 TACAACTAAAGTAAA CCAAGAGT GCTCGAG GCTCTTGG TTTTTTAACGTTTTC TERM 248 220094 - 220084 - g 85 -6.8 -5.00851 | ACCAACCAAAGAAAA GCTC ATG GAGC AGTTAAAGGGTGGGA Spy49_0211 220058 - 220762 + | N-acetylmannosamine-6-phosphate 2-epimerase TERM 249 221885 - 221913 + G 71 -7.5 -3.80174 | opp_overlap 221882, overlap 221899 221901 GGACCTAAAAATGTT GTTCGTACAGG TGCTTTC CCTGTAAGAAC TTCTTATGGGGATCT TERM 250 221901 - 221925 + G 77 -10.1 -3.34398 | opp_overlap 221882, overlap 221885 221899 TTCGTACAGGTGCTT TCCCTGTAAGA ACT TCTTATGGGGA TCTTTACAAAGACAA Spy49_0212 220811 - 222130 + | Sugar ABC transporter, sugar-binding protein TERM 251 222180 - 222195 + F 93 -7.6 -5.60993 | overlap 222146 TGTCAAATGGTCACT GGAAAG GAGC CTTTCC TTTTTTTATGAGAGA Spy49_0213 222235 - 223122 + | Putative sugar transport system Spy49_0214 223135 - 223965 + | Sugar ABC transporter, permease protein Spy49_0215 224179 - 224784 + | hypothetical membrane spanning protein nanH 224796 - 225710 + | Putative acylneuraminate lyase Spy49_0217 225732 - 226670 + | Putative glucose kinase TERM 252 226752 - 226798 + T 76 -7.4 -3.93963 | opp_overlap 226752, overlap 226760 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGTCGTTATTTTC TTTGTCAATAATAGT TERM 253 226798 - 226752 - T 82 -7.4 -4.58663 | opp_overlap 226752 226760 ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGTCGTTATTTTC TTTGTCAATAATAGT Spy49_0218c 227611 - 226781 - | Putative phosphosugar-binding transcriptional regulator TERM 254 228010 - 228030 + GH 71 -7.5 -3.53091 | opp_overlap 228002 CAAGAAATGGGCGTG GCCTACCAT AAT GTGGTTGGC TTTGACCAGGCCACT TERM 255 228485 - 228465 - gH 77 -6.1 -4.59773 | overlap 228466 228467 228483 GGTGACTTTCAAAAA GGCCCTTGA TAT TCAAGAGGC AGCGCAGCACTTGCC Spy49_0219 227863 - 228687 + | Sec-independent protein TatD Spy49_0220 228659 - 229249 + | Ribonuclease M5 ksgA 229363 - 230235 + | Dimethyladenosine transferase TERM 256 230481 - 230492 + F 73 -4.4 -4.90266 | opp_overlap 230481 TACCTCAAAAAATCA TCAG TGAT CTGA TTTTTAGTTGATAAA engC 230662 - 231534 + | Probable GTPase engC TERM 257 232028 - 232012 - g 77 -5.1 -4.8543 | overlap 232013 GAATGTTTAGAAAAA GTGGCTA CCG TAGCCAA ATGGCGAGATGAAAA TERM 258 232027 - 232013 - g 72 -8.6 -3.50535 | overlap 232012 AATGTTTAGAAAAAG TGGCTA CCG TAGCCA AATGGCGAGATGAAA rpe 231544 - 232206 + | Ribulose-phosphate 3-epimerase TERM 259 232280 - 232311 + G 83 -11 -3.72141 | opp_overlap 232280 GTCGGTATTGATAGA GGGAGCCTATTTTT ATTA GAAAATGGGCTTCC TTTGAATATGGCTGT TERM 260 232390 - 232373 - g 73 -5.6 -4.55287 | TTTACGGATATAAAA GAGAAG GCAGAG CTTCTC ATCACTGCTCATCCA TERM 261 232622 - 232591 - g 95 -11.6 -4.71426 | opp_overlap 232591 232592, overlap 232593 GCGTGACCAACAAAA TATGCTGACCTACC GCCC GGCAGGTCAGCACC TTATCCATCAAGAAG TERM 262 232592 - 232621 + G 76 -10.7 -2.61264 | opp_overlap 232591 232593, overlap 232591 CGTGACCAACAAAAT ATGCTGACCTACC GCCC GGCAGGTCAGCAC CTTATCCATCAAGAA TERM 263 232620 - 232593 - g 100 -16.4 -3.97413 | opp_overlap 232592 232591, overlap 232591 GTGACCAACAAAATA TGCTGACCTACC GCCC GGCAGGTCAGCA CCTTATCCATCAAGA Spy49_0225 232199 - 232831 + | Thiamin pyrophosphokinase TERM 264 233146 - 233131 - g 78 -4 -5.25803 | AACGCTTAGAAAAAA TTAACC AGCA GGTCAA CCAATCGCTCAAAAA TERM 265 233883 - 233867 - g 82 -3.7 -5.52909 | overlap 233869 TAATATCCAAAAAAA TGCTGAT GAC ATCAGTA AAATTTTGGGCAATG Spy49_0226 232833 - 234104 + | hypothetical protein TERM 266 234368 - 234341 - g 73 -7.8 -3.91911 | gap 1 CTCAGGTTAATCAAA TCACCT-TGCGAA ATG TTCGCCCAGGTGA GCCCAATGATCCAAA cbf 234094 - 235032 + | Putative CMP-binding factor TERM 267 235090 - 235112 + F 100 -9.3 -4.77216 | opp_overlap 235092 TTTTGATGTGCTTAA CACTTATGA TGGTT TCATAAGTG TTTTTGGCTCTTGTT TERM 268 236016 - 236002 - g 78 -7.1 -4.36914 | TGTGTTTGCAGAAAA CGCTC AATCA GAGCG TGAGCAAATGACCTT TERM 269 236081 - 236071 - g 73 -5.4 -4.62783 | opp_overlap 236071, overlap 236058 GATTGATGTCAAAAA CAAC AAT GTTG TTGTAGAAGTTGGTA purR 235298 - 236137 + | Putative purine operon repressor prgA 236128 - 238749 + | Putative surface exclusion protein TERM 270 238801 - 238831 + F 84 -6.3 -5.1166 | gap 1, opp_overlap 238801 TCTATTTGACATGAA GTACCGTCT-GTGT TATT ATATTAGACGGTAC TTTTTACTTTTGGTC rpsL 238900 - 239367 + | SSU ribosomal protein S12p (S23e) rpsG 239388 - 239858 + | SSU ribosomal protein S7p (S5e) TERM 271 239927 - 239941 + F 78 -7.2 -4.43501 | opp_overlap 239909 AGAAACTTCAGTTTC TAGGAA CTA TTCCTA TTTTGTCAGTGGCTT TERM 272 240149 - 240169 + F 100 -9.7 -4.75372 | opp_overlap 240149 CAAATATTTAGATAA CGGGTAGGT CCT GCCTATCCG TTTTTGCTAAATAGT TERM 273 240802 - 240778 - g 77 -8 -4.16443 | opp_overlap 240778, overlap 240774 AGATGAAAGCAGAAA TCTATACCAA CGACC TTGGTACAGA TATCCTTGAAGAAGA fusA 240225 - 242303 + | Elongation factor G TERM 274 242340 - 242314 - f 73 -8.9 -3.2613 | gap 1, opp_overlap 242314, overlap 242307 242304 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 275 242314 - 242340 + F 95 -8.9 -5.21709 | gap 1, opp_overlap 242307 242304 242314 AATAACCACCACTAA GAGGTTGAGGAT AACT ATCCT-AACCTC TTTTTTAGTGTAACA TERM 276 242445 - 242434 - f 77 -3 -5.48787 | opp_overlap 242434 AGAACATAGAAAAAA GAAA GTCC TTTC CTATATTTGTTGGGT plr 242651 - 243661 + | NAD-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 277 243831 - 243843 + T 86 -5.5 -5.72616 | AGGCTAAGATGGAAG GGGTG TCT TACCC TTTTTTTGTCTGACT Spy49_0235c 244003 - 243887 - | hypothetical protein TERM 278 243976 - 243990 + g 85 -5.7 -5.26918 | TCAGTCTTCTGTAAG CTGAC GATAA GTCAG TTTTTTCTGCCATAT Spy49_0236c 244885 - 244145 - | Amino acid ABC transporter, ATP-binding protein TERM 279 244429 - 244444 + g 73 -5.4 -4.57569 | CAGATAAGGCTCTGG CAATGG CAAC CCGTTG TTTTTGCCCCCCTGA Spy49_0237c 246447 - 244951 - | Putative glutamine-binding periplasmic protein TERM 280 245614 - 245598 - G 71 -5.1 -4.60041 | AGTTACCTTTAAAAA TAGCCCA CAT TGGCCTA GAAATGTATGCTTTA TERM 281 247391 - 247411 + G 71 -3.9 -5.00196 | opp_overlap 247393, overlap 247382 247395 GCTATTTGGCAAAGT CATTCCTCT GGT AGAGGTAGG TTTTCTTCTTTGGCA Spy49_0238 246645 - 248459 + | hypothetical protein bacA 248637 - 249476 + | Putative undecaprenol kinase TERM 282 249500 - 249523 + F 100 -12.4 -4.83759 | ATCGTTTAGGATGTT GCGACAGACC TTGG GGACTGTCGC TTTTTAAATTTCCTT TERM 283 249655 - 249638 - g 73 -5.6 -4.62772 | TGGAAATGAAACAAA TTAGCG AGACAA CGCTAA AAATAACAATTAGTA TERM 284 249751 - 249731 - g 82 -4 -5.4505 | TTCCTCAAGAAAAAA CAGAAGAG TTTTT CTATTCTG TGATGGACGAACTCG mecA 249622 - 250383 + | Adapter protein mecA TERM 285 251022 - 251037 + G 76 -3.2 -5.33848 | overlap 251024 CATTTTGGTCTTGAT TGCTGC TATT GCAGGA TTTTTTCCTTATAAT rgpG 250390 - 251559 + | Undecaprenyl-phosphate N-acetylglucosaminyl 1- phosphate transferase Spy49_0242 251681 - 252451 + | Iron-sulfur cluster assembly ATPase protein SufC Spy49_0243 252546 - 253808 + | Iron-sulfur cluster assembly protein SufD TERM 286 254053 - 254069 + G 71 -6.5 -4.2704 | AATATGAGGCCAGTC GCCAGCA GGT TGCTGAC TTTATTCATGCTAAA Spy49_0244 253839 - 255065 + | Cysteine desulfurase Spy49_0245 255052 - 255531 + | Iron-sulfur cluster assembly scaffold protein IscU Spy49_0246 255524 - 256942 + | Iron-sulfur cluster assembly protein SufB TERM 287 257002 - 257019 + T 77 -5.6 -4.90013 | TTATGAGTTGTAGTA CTAACC CCAAGT GGTTAG TTTTTAGTTGCCTTA TERM 288 257046 - 257093 + T 77 -8.7 -3.65224 | opp_overlap 257049 257051 257060, overlap 257050 257051 257053 257060 CTTAAACACGTAAGA TAACATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAATTCA TTATTGGCGTCCCAT TERM 289 257090 - 257049 - T 87 -10.4 -3.7212 | opp_overlap 257046 257050 257051 257053 257060, overlap 257051 257060 AAACACGTAAGATAA CATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAAT TCATTATTGGCGTCC TERM 290 257050 - 257089 + T 100 -13.9 -3.54158 | opp_overlap 257049 257051 257060, overlap 257046 257051 257053 257060 AACACGTAAGATAAC ATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAA TTCATTATTGGCGTC TERM 291 257088 - 257051 - T 100 -17.4 -3.42884 | opp_overlap 257050 257046 257051 257053 257060, overlap 257049 257060 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 292 257051 - 257088 + T 100 -17.4 -2.72013 | opp_overlap 257051 257049 257060, overlap 257050 257046 257053 257060 ACACGTAAGATAACA TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA ATTCATTATTGGCGT TERM 293 257053 - 257086 + T 100 -15.6 -2.89971 | opp_overlap 257051 257049 257060, overlap 257051 257050 257046 257060 ACGTAAGATAACATA TCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGA TAATTCATTATTGGC TERM 294 257079 - 257060 - T 88 -7.9 -4.88711 | opp_overlap 257053 257051 257050 257046 257060, overlap 257051 257049 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT TERM 295 257060 - 257079 + T 83 -7.9 -4.81685 | opp_overlap 257060 257051 257049, overlap 257053 257051 257050 257046 ATAACATATCAAAAA CCTCTGT GCTTTG ACAGAGG TTTTTGATAATTCAT pbp7 258275 - 257094 - | D-alanyl-D-alanine carboxypeptidase TERM 296 257753 - 257731 - G 71 -6.2 -4.16921 | opp_overlap 257730 257731 TAATAACCTTGAAAA GCTTGTGCTG CTG CACCACTAGC GTTTGAAAAATGAGT TERM 297 258414 - 258391 - R 85 -6.8 -5.24003 | gap 1 AATAAAAATGAAAAA GACTG-CAGAA GTA CTCTGTCAGTC AATGTCATACAAAAG TERM 298 258466 - 258449 - R 79 -8.5 -3.89346 | GTGTTATTCTATAAA GAGGTAT TGAC ATACCTC ACAAAACGGTTCCAC dacA 259676 - 258489 - | Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine- endopeptidase) TERM 299 259317 - 259301 - G 71 -9.5 -2.78679 | opp_overlap 259300 259299, overlap 259300 TTTTTTCAGCTAAAG CAATAGC GGG GCTATTG GCGTTATTAACAACT TERM 300 261283 - 261267 - g 73 -7.3 -4.09685 | GCTGAGTTTGCAAAA GCCAAAG AAG CTTTGAC AGCTGAAGGTGTAAC TERM 301 261444 - 261458 + G 73 -10 -2.78384 | opp_overlap 261443 261435 GAAACATCAACTCAC GAAGCC CAA GGCTTC TATGCTGAGACCCCA oppA 260007 - 261977 + | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA TERM 302 262032 - 261980 - f 79 -4.4 -5.26119 | gap 1, opp_overlap 261984 261984 261992, overlap 261983 261984 CGTTGAAAAATAAAA CGAT-GTTCAAAAGAACTTTCTC GTTTATGT GAGGGAGTTCTTTTGAACTATTG AGGATAACTATGAAA TERM 303 262027 - 261984 - f 75 -9.8 -2.64578 | opp_overlap 261984 261984 261992, overlap 261983 261980 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTC GTTTATGT GAGGGAGTTCTTTTGAAC TATTGAGGATAACTA TERM 304 261984 - 262027 + F 100 -15.6 -3.04461 | opp_overlap 261983 261980 261984, overlap 261984 261992 GAAAAATAAAACGAT GTTCAAAAGAACTTTCTCGT TTAT GTGAGGGAGTTCTTTTGAAC TATTGAGGATAACTA TERM 305 262805 - 262791 - g 74 -4.3 -4.87665 | opp_overlap 262791, overlap 262798 CCGTAGCTACAAAAA TCCAA AATCA TTGGA TGATATCACCAAGGT oppB 262042 - 263544 + | Oligopeptide transport system permease protein oppC 263544 - 264470 + | Oligopeptide transport system permease protein oppC oppD 264479 - 265549 + | Oligopeptide transport ATP-binding protein oppD TERM 306 265597 - 265579 - g 86 -10.4 -4.01564 | TAAAAGACCTAGAAA TTTCCTTC GGA GAAGGAAA GAAAAAATTTGTTGC oppF 265542 - 266465 + | Oligopeptide transport ATP-binding protein oppF TERM 307 266506 - 266550 + T 83 -5.9 -5.13722 | opp_overlap 266512, overlap 266507 266512 GGCTACTCTATTTTA AGTAAAGGATTTAGTTTTGTA TTG TAGAGAACTAAGTCCTTTTCG TTTTATTTTGATACG TERM 308 266507 - 266549 + T 80 -9.4 -3.67149 | opp_overlap 266512, overlap 266506 266512 GCTACTCTATTTTAA GTAAAGGATTTAGTTTTGTA TTG TAGAGAACTAAGTCCTTTTC GTTTTATTTTGATAC TERM 309 266512 - 266544 + T 88 -7.9 -4.83677 | opp_overlap 266512, overlap 266507 266506 TCTATTTTAAGTAAA GGATTTAGTTTTGTA TTG TAGAGAACTAAGTCC TTTTCGTTTTATTTT Spy49_0254c 266852 - 266613 - | transposase TERM 310 266656 - 266671 + g 83 -3.3 -5.55695 | AGAACTCGTCTTTGT CCATT CTTTAT AATGG TTTTTTGTCTTCTTC TERM 311 266710 - 266723 + g 76 -2.3 -5.47218 | opp_overlap 266710 GATGCTTCTTTCAAA CGGAG TTCT CTCGG TTTTTTTAAGTAAGC TERM 312 266853 - 266863 + H 82 -5.4 -5.31072 | CTCTTGTTTTCTCAA CAGT ATA ACTG TTTTTCTTATATTGT TERM 313 267102 - 267063 - H 100 -9.4 -5.27923 | opp_overlap 267065 267072, overlap 267065 TAATTTCATAAAAAA TACCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGGTG TAGTTCAAGGCTTTT TERM 314 267100 - 267065 - H 100 -12 -4.26475 | opp_overlap 267065 267072, overlap 267063 ATTTCATAAAAAATA CCCCGAACGTTAGA TTTTTTTG TCTAACGTTTGGGG TGTAGTTCAAGGCTT TERM 315 267065 - 267100 + H 95 -14.9 -2.90571 | opp_overlap 267065 267063, overlap 267072 ATTTCATAAAAAATA CCCCGAACGTTAGAT TTTTTT GTCTAACGTTTGGGG TGTAGTTCAAGGCTT TERM 316 267426 - 267412 - H 93 -8.6 -4.65032 | GAAACGAGAAATAAA TCTGTC AGC GACAGA AGGAACGAGTAAGTT TERM 317 269690 - 269711 + H 75 -10.1 -2.58544 | opp_overlap 269691, overlap 269689 ACGGCAGGAGGGCAA ACCGAGGAG TTTA CTCCTCGGG GTTGTAGGACTGCGA TERM 318 269710 - 269691 - H 100 -13.6 -3.62096 | opp_overlap 269690 269689 CGGCAGGAGGGCAAA CCGAGGAG TTTA CTCCTCGG GGTTGTAGGACTGCG TERM 319 272617 - 272634 + H 89 -6.3 -5.61824 | opp_overlap 272617, overlap 272608 GGCGGAGTAGAGAGA GGTAGGA AGCG TCCTATC TTTTTTTGCATTTTA TERM 320 272774 - 272797 + H 100 -14 -5.73339 | opp_overlap 272774 GCATAATGAAAAAAA CAACAGGACA CTAA TGTCCTGTTG TTTTTTTGTGGTTCT TERM 321 272797 - 272774 - H 100 -14 -5.68023 | opp_overlap 272774 GCATAATGAAAAAAA CAACAGGACA CTAA TGTCCTGTTG TTTTTTTGTGGTTCT comX1 272853 - 273338 + | ComX1 Alternate Sigma Factor TERM 322 273635 - 273662 + F 100 -12.2 -5.04597 | AATCATTTGTGATTA TCTTATCAGGAG TTGA CTCTTGATAAGA TTTTTGTATATCAGT Spy49_0257 273839 - 274423 + | hypothetical protein TERM 323 274499 - 274483 - g 87 -5.1 -5.4659 | GAAGATAAAGAAAAA GCTGG TTTTACG CCAGC TGCTGCTTTGAAAAA Spy49_0258 274423 - 275544 + | GTP-binding protein TERM 324 275585 - 275570 - g 78 -2.6 -5.43866 | GAAGTTGGAAAAAAA TGCTTA CAAG TAAACA AAGAGCTTTCTTAAA Spy49_0259 275569 - 275877 + | hypothetical protein Spy49_0260 275946 - 276578 + | Nicotinate-nucleotide adenylyltransferase TERM 325 277041 - 277029 - g 70 -3.3 -4.86001 | opp_overlap 277029 ATGACGCTAGAAAAA TCGCG AAG CTCGA TTTGAATCAGGCTGT Spy49_0261 276575 - 277168 + | hypothetical protein TERM 326 277441 - 277456 + G 82 -4 -5.40072 | TTGCTTGATTTGACT GATGTG GTGG TACATC TTTTTTTAGAAGACG Spy49_0262 277168 - 277545 + | hypothetical protein TERM 327 277559 - 277577 + F 76 -6.7 -4.60487 | opp_overlap 277557 277559 AATGTTACAAAGAGA CCTTGTC AATAC GACAGGG TTTTTGAGGATGATA Spy49_0263 277593 - 278336 + | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5 TERM 328 278970 - 278958 - g 76 -3.4 -5.28176 | GCTATCCACAAAAAA CACA AAAAA TGTG GGAAATCTTTGCTGG Spy49_0264 278558 - 279664 + | hypothetical protein TERM 329 279659 - 279649 - f 84 -5.4 -5.58179 | opp_overlap 279656 TATTATAATAAAAAA TGAG AGG CTCA ATTAAACTCTAATTG TERM 330 279656 - 279676 + F 93 -7 -5.41746 | opp_overlap 279649 ATAAAAAATGAGAGG CTCAATTA AACTC TAATTGAG TTTTTTTGGGGGCTT Spy49_0265 280146 - 280862 + | hypothetical protein TERM 331 280884 - 280905 + F 86 -8.1 -4.68994 | opp_overlap 280884 ATAGAATAATAAAAA GAGTTGAAA TCTA TTTCAGCTC TTTTTAAGTGATGCT TERM 332 280905 - 280884 - f 84 -5.9 -5.35721 | opp_overlap 280884 ATAGAATAATAAAAA GAGTTGAAA TCTA TTTCAGCTC TTTTTAAGTGATGCT atmA 281260 - 281907 + | ABC transporter, substrate-binding protein TERM 333 282631 - 282621 - g 70 -5.4 -4.3453 | overlap 282617 AAGGCTAAATACAAA TCAG TAG CTGA TCTGCCAAATGGTGC atmB 282234 - 283079 + | Methionine ABC transporter substrate-binding protein atmD 283329 - 284393 + | Putative ABC transporter atmE 284394 - 285086 + | Methionine ABC transporter permease protein TERM 334 285125 - 285088 - T 100 -10.2 -4.57482 | gap 2, opp_overlap 285093 285096, overlap 285093 TTAGTCATAAATAAA CGAAACAACACCCTAAGT TTTT ACTTAGGGTGTTGTT--G TTTAGATGATGTCAT TERM 335 285122 - 285093 - T 100 -18.1 -4.29621 | opp_overlap 285093 285096, overlap 285088 CATAAATAAACGAAA CAACACCCTAAGT TTTT ACTTAGGGTGTTG TTGTTTAGATGATGT TERM 336 285093 - 285122 + T 100 -18.1 -3.98075 | opp_overlap 285093 285088, overlap 285096 CATAAATAAACGAAA CAACACCCTAAGT TTTT ACTTAGGGTGTTG TTGTTTAGATGATGT TERM 337 285096 - 285119 + T 100 -14 -4.10744 | opp_overlap 285093 285088, overlap 285093 AAATAAACGAAACAA CACCCTAAGT TTTT ACTTAGGGTG TTGTTGTTTAGATGA braB 286474 - 285140 - | Putative branched-chain amino acid transport protein Spy49_0272 286820 - 287959 + | Putative sodium/dicarboxylate symporter TERM 338 288005 - 287982 - T 100 -11.1 -5.27399 | opp_overlap 287982 TAATATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTATTATTTA TERM 339 287982 - 288005 + T 100 -11.1 -6.01369 | opp_overlap 287982 TAATATAGTAAAAAA CATCCTTGG AAAACG CCAAGGATG TTTTTTTATTATTTA Spy49_0273c 288688 - 288014 - | Potassium uptake protein, Trk family Spy49_0274c 290089 - 288698 - | Putative V-type Na+-ATPase subunit J TERM 340 290145 - 290128 - R 82 -5.6 -5.23016 | opp_overlap 290128 290127 AAATAAGTTAAAAAA GCTAAG TTTCAT CTTAGC CTTTGGTACTATTTA gidB 290871 - 290158 - | Methyltransferase gidB TERM 341 290516 - 290504 - G 83 -3.4 -5.55664 | CTACCATGAAAAAAA TGGA CATTT TCCA AGCCCAATTCCTGAG TERM 342 290715 - 290728 + g 70 -3.1 -4.85918 | AATCATAAAAATGCT TGAGG TAAA CTTCA TTTTCTTCTGTAATA TERM 343 291387 - 291368 - g 74 -6.5 -4.48175 | AAAAGCTAACGAAAA CTTCTTG AAATTA CAAGAAG AGTTGACCAATACGG lemA 291021 - 291578 + | Putative cytoplasmic membrane protein TERM 344 291655 - 291667 + G 70 -3.4 -4.85618 | opp_overlap 291655 ATTTCACAAAATAAG CAAC GAACA GTTG TTTTATTAGTTGTTT TERM 345 291996 - 291981 - g 83 -9 -4.09864 | opp_overlap 291982 291983, overlap 291982 ATCTAGCCCTCAAAA TGCTGC TGTT GCAGCA ACGACAGGTTTACTT htpX 291625 - 292521 + | Probable HtpX-like protease TERM 346 292518 - 292549 + F 79 -3.8 -5.51046 | gap 1 AAGGTTAAAAAACAT GTGAGCGTTTGGG GTTTTTG CTCAAGC-CTCAC TTTTTTATGTCTTTG TERM 347 293260 - 293237 - g 83 -6.1 -5.093 | opp_overlap 293237 293254 TCTAAAAGAAGAAAA GCAAAAAGA AAATAA TCCTTTTGC TAGCTTGCAAGGGTT Spy49_0278 292755 - 293288 + | hypothetical protein TERM 348 293605 - 293590 - g 74 -6.2 -4.43681 | opp_overlap 293589 293585 293590 TATTGAAGATGAAAA GAATCT GGCT AGATTC GTTTCTCTTGAGCTG csrR 293555 - 294241 + | Response regulator CsrR TERM 349 294428 - 294458 + G 82 -8.4 -4.27316 | AAGCTGTAAATATTG TTAGAGTTCGTCTT TCT GAGGTGGACTCTAA TTTTACATTAGAGAA csrS 294247 - 295749 + | Transmembrane histidine kinase CsrS nrdR.1 295964 - 296458 + | Ribonucleotide reductase transcriptional regulator NrdR dnaB 296442 - 297617 + | Putative chromosome replication initiation protein/membrane attachment protein TERM 350 298227 - 298211 - g 70 -2.9 -5.09895 | opp_overlap 298212, overlap 298212 CATTGATGTAAAAAA TGCCATT TCA AACGGCT CTGTTAAAGAAGAAA dnaI 297618 - 298520 + | Helicase loader DnaI engA 298583 - 299893 + | GTP-binding protein EngA TERM 351 299947 - 299979 + F 95 -8.5 -4.92783 | opp_overlap 299947 TCTCATCATTGATAA GGACTGTGTTGTGTA TGT TACAGGAGACAGTCC TTTTTATAATACCTT snf 300100 - 303198 + | Putative SNF helicase Spy49_0286 303442 - 304044 + | hypothetical protein TERM 352 304494 - 304523 + G 76 -3.5 -5.2853 | overlap 304508 TTTAATTGGTGATGG TACTGGGCGTGGG TCTG CTAATGCGCAGTA TTTTGTTTTTGAATC murC1 304084 - 305412 + | UDP-N-acetylmuramate--alanine ligase TERM 353 305418 - 305432 + F 100 -11.4 -4.58466 | opp_overlap 305416 TAACCAATAACATGT CCTGCC TTA GGCAGG TTTTCTCATTCTAAA Spy49_0288 305458 - 305940 + | Putative arylalkylamine n-acetyltransferase TERM 354 306963 - 306946 - g 76 -3.5 -5.32699 | opp_overlap 306955 GGAAAGACCAAAAAA GCTAAAA CACC TTTTAAC GAGAAGGATTTTTTG TERM 355 307594 - 307571 - g 81 -6.8 -4.68593 | opp_overlap 307573 TTTACTATGCAAAAA CATTTGAAGA GCAC TCTGCAAATG TTGAAAAATATGTGA Spy49_0289 306058 - 307626 + | Putative aminodeoxychorismate lyase TERM 356 307620 - 307666 + F 100 -23.5 -3.33696 | gap 1, opp_overlap 307620 307628 307634, overlap 307628 307634 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 357 307666 - 307620 - f 100 -23.5 -2.85503 | gap 1, opp_overlap 307620 307628 307634, overlap 307628 307634 TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTT-CTGA TTCGTTCAAAAAAGA TERM 358 307659 - 307628 - f 100 -20.4 -3.82097 | opp_overlap 307620 307628 307634, overlap 307620 307634 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 359 307628 - 307659 + F 100 -20.4 -4.10331 | opp_overlap 307628 307620 307634, overlap 307620 307634 GTCAAATTCAGTAAA CACAAACATGGTGC TTAA GCACCATGTTTGTG TTTCTGATTCGTTCA TERM 360 307653 - 307634 - f 100 -12.2 -4.36903 | opp_overlap 307628 307620 307634, overlap 307628 307620 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT TERM 361 307634 - 307653 + F 100 -12.2 -4.42513 | opp_overlap 307634 307628 307620, overlap 307628 307620 TTCAGTAAACACAAA CATGGTGC TTAA GCACCATG TTTGTGTTTCTGATT greA 307651 - 308181 + | Transcription elongation factor GreA TERM 362 308380 - 308357 - T 71 -3.1 -5.10163 | overlap 308360 AATGCCAAAAGAAAA GACCAGCAC CTTAAT GTACTGACC CCAAAAAGTTGGACA TERM 363 308696 - 308743 + T 100 -15.8 -5.38951 | overlap 308697 ATCGTTAGATTTTTT TGATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATCG TTTTTTGTCTAACTT TERM 364 308697 - 308742 + T 100 -17.1 -3.81744 | overlap 308696 TCGTTAGATTTTTTT GATATGTCCCCTTTCACTAGA TGAG TCCAGTAAAAGGGGGCATATC GTTTTTTGTCTAACT oxaA 309723 - 308800 - | Membrane protein oxaA 2 precursor Spy49_0292c 310083 - 309805 - | Putative acylphosphatase Spy49_0293 310344 - 311081 + | Putative rRNA methylase Spy49_0294 311120 - 311620 + | hypothetical protein Spy49_0295 311635 - 312324 + | hypothetical protein TERM 365 312366 - 312318 - f 100 -18.8 -4.1552 | gap 1, opp_overlap 312327 312334, overlap 312321 312334 TATTTTTGGAAGAAA TGATTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA-CA GGATAAGTAAACTGT TERM 366 312364 - 312321 - f 100 -21.6 -3.10244 | opp_overlap 312327 312334, overlap 312318 312334 TTTTGGAAGAAATGA TTAACATTAAAAAGTGAGTA TAAC TACTCACTTTTTAATGTTAA CAGGATAAGTAAACT TERM 367 312327 - 312358 + F 95 -14.8 -3.02511 | opp_overlap 312321 312318 312334, overlap 312334 AAGAAATGATTAACA TTAAAAAGTGAGTA TAAC TACTCACTTTTTAA TGTTAACAGGATAAG TERM 368 312334 - 312351 + F 95 -8.5 -4.87626 | opp_overlap 312321 312318 312334, overlap 312327 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA TERM 369 312351 - 312334 - f 95 -8.5 -4.89233 | opp_overlap 312334 312327, overlap 312321 312318 GATTAACATTAAAAA GTGAGTA TAAC TACTCAC TTTTTAATGTTAACA Spy49_0296 312502 - 312744 + | hypothetical protein TERM 370 312866 - 312889 + F 100 -11.1 -4.82667 | opp_overlap 312866 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA TERM 371 312889 - 312866 - f 100 -11.1 -4.85782 | opp_overlap 312866 GGGTTTAAAAAGAAA CTCAGTTGG CTATTT CCAACTGAG TTTTTCATATCGTCA glr 312922 - 313716 + | Glutamate racemase Spy49_0298 313713 - 314699 + | HAM1-like protein Spy49_0299 314678 - 315199 + | hypothetical protein Spy49_0300 315196 - 315657 + | CBS domain protein TERM 372 315994 - 315979 - g 72 -3.2 -5.14563 | TTTTCTATCAAAAAA CCCC TTTTGTGT GGGG GCAATTAATCAGCTT xerD 315654 - 316400 + | Tyrosine recombinase xerD Spy49_0302 316400 - 317104 + | Segregation and condensation protein A Spy49_0303 317101 - 317652 + | Segregation and condensation protein B rluB 317773 - 318495 + | Putative ribosomal large subunit pseudouridine synthase Spy49_0305 318495 - 318755 + | hypothetical protein Spy49_0306 318933 - 319481 + | Putative rRNA methylase TERM 373 319544 - 319486 - f 76 -9.9 -2.77539 | gap 1, opp_overlap 319487 319496, overlap 319496 AACTAAAATAATGGA CTTTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAAA- TTTAGTCAAAGCTAT TERM 374 319487 - 319544 + F 100 -22.5 -3.73402 | opp_overlap 319486 319496, overlap 319496 ACTAAAATAATGGAC TTTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAAA TTTAGTCAAAGCTAT TERM 375 319535 - 319496 - f 78 -7.8 -4.09864 | opp_overlap 319496 319487, overlap 319486 ATGGACTTTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 376 319496 - 319535 + F 100 -14.4 -4.17491 | opp_overlap 319486 319496, overlap 319487 ATGGACTTTTTAAAA GCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGC TTTTAAAAATTTAGT TERM 377 319757 - 319784 + F 89 -7.2 -5.21709 | CAATAACGACGGAAC TTCTTTCAATTT GAAA AAATTGGAGGAA TTTTTTAATGTCAAA Spy49_0307 319792 - 320328 + | Riboflavin transporter YpaA TERM 378 320639 - 320654 + G 70 -3.2 -4.86621 | opp_overlap 320639 GTTTATCTTATCAAA TGGTGC CATT GCAGCA TTTTTGATTACGACT Spy49_0308 320553 - 321011 + | Putative phosphatase TERM 379 321047 - 321096 + F 89 -8.9 -4.43879 | opp_overlap 321053 321056, overlap 321048 321053 GCTTATTTAAATCAT TTAGAATAACATTGGCAAGCA TCACCCCT TGATTGCCAGTGTTATTTTAG TTTTAGTTAGATGAT TERM 380 321048 - 321095 + F 83 -10.2 -3.25604 | opp_overlap 321053 321056, overlap 321047 321053 CTTATTTAAATCATT TAGAATAACATTGGCAAGCA TCACCCCT TGATTGCCAGTGTTATTTTA GTTTTAGTTAGATGA TERM 381 321053 - 321090 + F 83 -7.9 -4.72729 | opp_overlap 321053 321056, overlap 321048 321047 TTAAATCATTTAGAA TAACATTGGCAAGCA TCACCCCT TGATTGCCAGTGTTA TTTTAGTTTTAGTTA Spy49_0309 321303 - 322223 + | Conserved hypothetical protein TIGR01212 TERM 382 322365 - 322391 + G 76 -7.4 -4.22407 | ATGGAAATGATACTG CCTTTTTGGC ACAATTA GCTAAAAAGG TTTATGCTTTTGATG TERM 383 322765 - 322779 + G 75 -2.8 -5.2112 | opp_overlap 322765 TCAGCCTCTTAATCA GGTG AATACCC CACC TTTTTTAATCATGTT Spy49_0310 322262 - 322816 + | hypothetical protein hlyX 322950 - 324284 + | Putative hemolysin TERM 384 324279 - 324299 + F 100 -11.2 -4.7254 | opp_overlap 324279 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT TERM 385 324299 - 324279 - f 87 -11.2 -3.1994 | opp_overlap 324279 CAGATTATTGAGGAA GACTAGGC TCCAT GCCTAGTC TTTTTGATGAAAAGT TERM 386 324343 - 324328 - g 71 -4.8 -4.48987 | GTGTTATAATGAAAA TGTAAA AACG TTTACA AGTAATGAAGGAGAT pflC 324290 - 325153 + | Pyruvate formate-lyase activating enzyme TERM 387 325167 - 325183 + F 100 -10.9 -4.67556 | AAGAGCTGTTATAGG GTTGAGG TTT CCTCAAC TTTTTAAAGTATTAT TERM 388 325694 - 325679 - g 74 -4.7 -4.87803 | TATGTTTAAAGAAAA TGGCA TCGAGG TGCCA AAAGCGATTGCAGGG Spy49_0313 325284 - 326219 + | Probable manganese-dependent inorganic pyrophosphatase TERM 389 326262 - 326238 - f 93 -10.1 -4.11773 | opp_overlap 326238 AAAGACGCTTTAAAA GGACTTGGT TTTTTTG ACCAAGTCC TTTTTTCACTCTTCT TERM 390 326238 - 326262 + F 100 -10.8 -5.17054 | opp_overlap 326238 AAAGACGCTTTAAAA GGACTTGGTT TTTTT GACCAAGTCC TTTTTTCACTCTTCT Spy49_0314 326295 - 326948 + | Hypothetical streptococcal protein TERM 391 326981 - 326953 - T 71 -5.3 -4.58424 | opp_overlap 326955, overlap 326955 TAGCACCATAGAAAA GAGCTAGGAACAA GGA CTGTTCTTAGCTT TTTGAGTGCTTTTAT TERM 392 326955 - 326979 + T 100 -9.4 -4.7329 | opp_overlap 326953 326955 GCACCATAGAAAAGA GCTAGGAACA AGGAC TGTTCTTAGC TTTTTGAGTGCTTTT TERM 393 326979 - 326955 - T 73 -7.9 -3.89814 | opp_overlap 326955, overlap 326953 GCACCATAGAAAAGA GCTAGGAACAA GGA CTGTTCTTAGC TTTTTGAGTGCTTTT fhuG 328030 - 326993 - | Ferrichrome transport system permease protein fhuG fhuB1 329043 - 327991 - | Ferrichrome transport system permease protein fhuB TERM 394 328056 - 328067 + gr 70 -7.2 -3.72695 | opp_overlap 328055 TTAAGCTAACCAATG CCCC AAGA GGGG TTTCATAAGGCGGAT TERM 395 328228 - 328218 - GR 75 -5.4 -4.77775 | AGCCGATAAAAGAAA TGCT TCC AGCA ATGGCTACAGCTGCT fhuD 329965 - 329033 - | Ferrichrome-binding periplasmic protein precursor TERM 396 329670 - 329683 + g 76 -2.4 -5.46629 | opp_overlap 329664, overlap 329664 329667 TCTAAATCAGTTGCA GCAA CTTGCT TTGC TTTTTTTACAGTCTT fhuC1 330773 - 329991 - | Ferrichrome transport ATP-binding protein fhuC TERM 397 330717 - 330705 - G 80 -6.3 -4.70583 | TTCAGGAATATAAAA CGATA ATT TATCG ATGATGGTACGCTGT TERM 398 330906 - 330919 + r 85 -6.7 -5.2422 | opp_overlap 330899 330906 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 399 330919 - 330906 - R 87 -6.7 -5.40625 | opp_overlap 330906, overlap 330899 ATAGCATAGAAAAAA GGCTT AACA AAGCC TTTTTTGATGTGATT TERM 400 331008 - 330958 - R 83 -5.9 -5.0917 | opp_overlap 330963, overlap 330960 GTATTAAAAAAGAAA TATTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAATG TCAACATACTCTAGA TERM 401 331006 - 330960 - R 85 -8.5 -4.15047 | opp_overlap 330963, overlap 330958 ATTAAAAAAGAAATA TTAGTTTAGAATGATTA AAAACAATAGCGA TAATCATTCTAAACTAA TGTCAACATACTCTA murE 332464 - 331019 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase Spy49_0320 332552 - 334186 + | Putative polysaccharide biosynthesis protein TERM 402 334204 - 334230 + F 91 -5.3 -5.84381 | gap 1, opp_overlap 334204 TAATGACACCAAGAA CGATTTCG-TGA GTGC TTATCGAAATCG TTTTTTTCTTAATGA upp 334353 - 334982 + | Uracil phosphoribosyltransferase clpP 335206 - 335796 + | ATP-dependent Clp protease proteolytic subunit TERM 403 335808 - 335843 + F 74 -9.2 -3.01712 | opp_overlap 335814 335817, overlap 335814 ATAAAGAAGATCTCT GCAAAAGTATTCTAGA AACT TCTAGGATGCTTTTTC TCTTAGAAAGGAAAA TERM 404 335814 - 335837 + F 84 -6.8 -5.0916 | opp_overlap 335814 335817, overlap 335808 AAGATCTCTGCAAAA GTATTCTAGA AACT TCTAGGATGC TTTTTCTCTTAGAAA TERM 405 336256 - 336236 - f 75 -4.8 -4.84363 | gap 1, opp_overlap 336249 CCAAAGCAGCAAAAA GACC-AAGA CCCT TCTTTGGTC TCTACCAAAATATAA Spy49_0325 336288 - 336563 + | hypothetical protein TERM 406 336569 - 336557 - f 81 -7.7 -4.40037 | AAACAACCATCAAAA GGGTT AAC AACCC CCTAGTTACTGATTA TERM 407 336736 - 336758 + F 70 -4.2 -4.7329 | gap 1, opp_overlap 336736, overlap 336755 TGGTCCTAAAATAGA GCACTG-CA AAGATA TGCCAGTGC TTTTTAGCTCATTTT tmk 336812 - 337447 + | Thymidylate kinase Spy49_0327 337465 - 338340 + | DNA polymerase III delta prime subunit Spy49_0328 338688 - 338849 + | signal peptidase-like protein TERM 408 339212 - 339192 - g 81 -6.9 -4.67011 | opp_overlap 339192 AACGGTAGCTAAAAA TCCTTCC AAACAAA GGAAGGA TCACTTAGAGGGAAT Spy49_0329 339004 - 339327 + | hypothetical protein TERM 409 340009 - 339993 - g 70 -7.9 -3.73775 | opp_overlap 339993, overlap 339995 CCTACCTTGAGGAAA CACCCCT CAA AGGGGAG TGTCTGCTGATTGTG TERM 410 340007 - 339995 - g 74 -9.1 -3.45324 | opp_overlap 339993, overlap 339993 TACCTTGAGGAAACA CCCCT CAA AGGGG AGTGTCTGCTGATTG Spy49_0330 339332 - 340195 + | Tetrapyrrole methylase family protein Spy49_0331 340222 - 340614 + | hypothetical protein TERM 411 340624 - 340650 + T 100 -9.6 -4.323 | opp_overlap 340624 AACTAAGAGAAAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA TERM 412 340650 - 340624 - T 100 -9.6 -5.50925 | opp_overlap 340624 AACTAAGAGAAAAAA GACCATCAAT TGGATTT ATTGATGGTC TTTTAGGTGTTTAAA Spy49_0332c 341290 - 340661 - | Putative copper homeostasis protein TERM 413 341105 - 341094 - G 73 -5.8 -4.60797 | TCGTTATAGACAAAA TCGC CACC GCGA GGTCGAATCATGGTC TERM 414 341565 - 341549 - H 80 -6.5 -4.7871 | overlap 341551 AATGATGACCAAAAA CAGGCGC CCC ACGCCTA AAACAGTTACCCTAA TERM 415 341563 - 341551 - H 73 -6.9 -4.00443 | overlap 341549 TGATGACCAAAAACA GGCGC CCC ACGCC TAAAACAGTTACCCT Spy49_0333 341597 - 341953 + | Putative arsenate reductase TERM 416 341959 - 342016 + T 100 -11.7 -4.62471 | gap 1, opp_overlap 341954 341974, overlap 341963 341974 TTTAGGATAATGCGA CAAAGTCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGA-TCTG TTTTTAGAAATTAGA TERM 417 341963 - 342014 + T 100 -13.4 -3.92577 | gap 1, opp_overlap 341954 341974, overlap 341959 341974 GGATAATGCGACAAA G-TCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGATC TGTTTTTAGAAATTA TERM 418 342002 - 341974 - T 100 -10.3 -5.07107 | opp_overlap 341963 341959 341974 CAAAGTCTCAAAAAA GGACAAGGCAACA TTA TAACGCCTTGTCC TTTTTTGGGATCTGT TERM 419 341974 - 342002 + T 88 -7.5 -5.08169 | opp_overlap 341974, overlap 341963 341959 CAAAGTCTCAAAAAA GGACAAGGC AACATTATAAC GCCTTGTCC TTTTTTGGGATCTGT exoA 342938 - 342027 - | Putative 3-exo-deoxyribonuclease TERM 420 343112 - 343101 - g 73 -2.2 -5.27923 | CAATGGCACAAAAAA CAGT CATC ACCG AAGAAACAACCGATT lctO 343088 - 344269 + | Lactate oxidase TERM 421 344311 - 344282 - f 77 -5.1 -5.186 | gap 1, opp_overlap 344282 TAAAACAGACAAAAA CCTCTGCTATCATG TCA CA-AATAGTAGAGG TTTTACACTGCAAAA prtS 344611 - 349476 + | Putative cell envelope proteinase TERM 422 349476 - 349462 - f 83 -5 -5.44119 | TTTAGCCGAAAAAAA TCAACC AAA GATTGA TAACAAAACGCACAG TERM 423 349651 - 349594 - f 100 -28.3 -3.51202 | gap 1, opp_overlap 349595 349598 349601 349604 349606 349614, overlap 349596 349601 349604 349614 GAGCAAAGTAAGGAA CAGACAATAACCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTGTTATTGTC-G TGTGCTACGATGACT TERM 424 349595 - 349651 + F 100 -28.5 -2.79915 | opp_overlap 349594 349596 349601 349604 349614, overlap 349598 349601 349604 349606 349614 AGCAAAGTAAGGAAC AGACAATAACCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTGTTATTGTCG TGTGCTACGATGACT TERM 425 349650 - 349596 - f 100 -32 -3.31914 | opp_overlap 349595 349598 349601 349604 349606 349614, overlap 349594 349601 349604 349614 GCAAAGTAAGGAACA GACAATAACCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTGTTATTGTC GTGTGCTACGATGAC TERM 426 349598 - 349648 + F 100 -28.8 -2.66634 | opp_overlap 349596 349594 349601 349604 349614, overlap 349595 349601 349604 349606 349614 AAAGTAAGGAACAGA CAATAACCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTGTTATTG TCGTGTGCTACGATG TERM 427 349601 - 349645 + F 100 -24.7 -3.484 | opp_overlap 349596 349594 349601 349604 349614, overlap 349598 349595 349604 349606 349614 GTAAGGAACAGACAA TAACCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTGTTA TTGTCGTGTGCTACG TERM 428 349645 - 349601 - f 100 -24.7 -3.72909 | opp_overlap 349601 349598 349595 349604 349606 349614, overlap 349596 349594 349604 349614 GTAAGGAACAGACAA TAACCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTGTTA TTGTCGTGTGCTACG TERM 429 349642 - 349604 - f 100 -22 -3.97645 | opp_overlap 349604 349601 349598 349595 349606 349614, overlap 349601 349596 349594 349614 AGGAACAGACAATAA CCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 430 349604 - 349642 + F 100 -22 -3.87505 | opp_overlap 349601 349596 349594 349604 349614, overlap 349601 349598 349595 349606 349614 AGGAACAGACAATAA CCCCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGGTG TTATTGTCGTGTGCT TERM 431 349606 - 349640 + F 100 -23.2 -3.51879 | opp_overlap 349604 349601 349596 349594 349614, overlap 349604 349601 349598 349595 349614 GAACAGACAATAACC CCATAAAAGCAAGCCA GTT TGGCTTGCTTTTATGG TGTTATTGTCGTGTG TERM 432 349614 - 349632 + F 100 -13.2 -4.57533 | opp_overlap 349604 349601 349596 349594 349614, overlap 349606 349604 349601 349598 349595 AATAACCCCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 433 349632 - 349614 - f 100 -13.2 -4.44461 | opp_overlap 349614 349606 349604 349601 349598 349595, overlap 349604 349601 349596 349594 AATAACCCCATAAAA GCAAGCCA GTT TGGCTTGC TTTTATGGTGTTATT TERM 434 349927 - 349941 + F 73 -7.2 -4.07568 | opp_overlap 349927 349929 CTTTGTCATTCAACA TACTGA ACT TCAGTA TTTTAGAACGGAGAC TERM 435 349997 - 349987 - f 71 -6.8 -4.2687 | CTCAAAAAGCATAAA CAGC TCT GCTG ATGTGACATCTGATT TERM 436 350131 - 350103 - f 72 -5.9 -4.41633 | TAGGCTCAAAAATAA GGCATAGAATTCC AAA GGAAGTCGCTGCC GTGAGCACAACCTAA TERM 437 350185 - 350199 + F 100 -7.2 -5.79595 | opp_overlap 350185 TTCTGCAATTTGAAA TACTGA AAT TCAGTA TTTTTTCTTTTGGAA Spy49_0337 350303 - 350956 + | hypothetical protein metS 351196 - 353196 + | Methionyl-tRNA synthetase TERM 438 353242 - 353219 - f 76 -4.6 -5.1101 | opp_overlap 353219 CTATTATTCAAAAAA CCTAAGCA AGAACATG CGCTTAGG TTTTTTTGATTGCCT TERM 439 353219 - 353242 + F 84 -3.9 -5.64006 | opp_overlap 353219 CTATTATTCAAAAAA CCTAAGC AAGAACATGC GCTTAGG TTTTTTTGATTGCCT TERM 440 353450 - 353435 - f 72 -6.2 -4.37092 | opp_overlap 353435 ATGGTTTTTATAAAA GTTAAG CATG CTTAAC TTTAGCCAAACAAAA TERM 441 353485 - 353468 - f 73 -7 -4.07285 | overlap 353466 TAGCCAAACAAAAGA GGACAC TAGAGC GTGTCC CACAAGACAGTTGAG nrdF.2 353694 - 354707 + | Ribonucleotide reductase of class Ib (aerobic), beta subunit nrdI.2 354711 - 355199 + | Ribonucleotide reduction protein NrdI nrdE.2 355166 - 357346 + | Ribonucleotide reductase of class Ib (aerobic), alpha subunit TERM 442 357438 - 357411 - T 77 -10 -3.09516 | opp_overlap 357411, overlap 357413 357416 CGCTCGACCATTTAA GACAAGCAAG CATCAGCT CTTGCTTGTC TTTTTTTGAGCATCA TERM 443 357411 - 357438 + T 100 -10 -5.42259 | opp_overlap 357411 357413 357416 CGCTCGACCATTTAA GACAAGCAAG CATCAGCT CTTGCTTGTC TTTTTTTGAGCATCA TERM 444 357469 - 357481 + T 77 -4.8 -5.1861 | opp_overlap 357469 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTGGTGATCGG TERM 445 357481 - 357469 - T 91 -4.8 -5.81032 | opp_overlap 357469 GAACGTCAAAAAAAA GGAC ATGGA GTCC TTTTTTGGTGATCGG TERM 446 357530 - 357544 + T 77 -3.5 -5.56568 | CTGCCCTTGAAATAC GCTTC TATGT GGAGC TTTTTTTGGTCCTGT Spy49_0342c 358260 - 357508 - | hypothetical protein TERM 447 357849 - 357817 - G 70 -9.2 -3.14602 | overlap 357815 GTTACGGTAGTAAGA CGTGAGATCAGCGT GTGAA ACACCGATATCACG CAAAAACGTCTCGTA Spy49_0343 358946 - 359164 + | hypothetical protein Spy49_0344 359112 - 359315 + | hypothetical protein TERM 448 359391 - 359413 + T 100 -15.6 -4.88222 | TCCCTTTAGTAGTCA GGCCACCTCT GAT AGGGGTGGCC TTTTTGGGTTTTAGT TERM 449 359578 - 359600 + T 100 -12.8 -4.90381 | opp_overlap 359576 359573 TATAGCTAAACACGT GAGGAGACGA GAC TCGTCTTCTC TTTTGTTATGTTCAA Spy49_0345c 359765 - 359568 - | Transposase Spy49_0346c 360859 - 360026 - | Putative transposase, ISSmu2 TERM 450 360334 - 360323 - G 71 -7.2 -3.92075 | opp_overlap 360323 360322 ATCTTGAGCGATAAA GGCG AGTT CGCC CTTTTGATAGGAAAA TERM 451 360896 - 360946 + H 93 -7.2 -5.58074 | gap 2, opp_overlap 360897 360898 360899, overlap 360874 360897 360897 TGTGTACATCCAAAA AGTCT-TATAATATCTGTAG-GGG ATTTA CCCACTACAGATATTATAGAGCCC TTTTTTTGCTACTTA TERM 452 360897 - 360945 + H 93 -10.7 -3.93218 | gap 2, opp_overlap 360897 360898 360899, overlap 360874 360896 360897 GTGTACATCCAAAAA GTCT-TATAATATCTGTAG-GGG ATTTA CCCACTACAGATATTATAGAGCC CTTTTTTTGCTACTT TERM 453 360897 - 360944 + H 81 -10.9 -2.94304 | gap 1, opp_overlap 360897 360898 360899, overlap 360874 360897 360896 GTGTACATCCAAAAA GTCTTATAATATCTGTAG-GGG ATTTA CCCACTACAGATATTATAGAGC CCTTTTTTTGCTACT TERM 454 360945 - 360897 - H 100 -10.7 -4.70659 | gap 2, opp_overlap 360874 360897 360897 360896, overlap 360898 360899 GTGTACATCCAAAAA GTCT-TATAATATCTGTAG-GGG ATTTA CCCACTACAGATATTATAGAGCC CTTTTTTTGCTACTT TERM 455 360942 - 360898 - H 90 -11.9 -3.41913 | opp_overlap 360874 360897 360897 360896, overlap 360897 360899 TGTACATCCAAAAAG TCTTATAATATCTGTAG-GGG ATTTA CCCACTACAGATATTATA-GA GCCCTTTTTTTGCTA TERM 456 360943 - 360899 - H 84 -11.9 -2.64666 | gap 2, opp_overlap 360897 360897 360896, overlap 360898 360897 GTACATCCAAAAAGT CT-TATAATATCTGTAG-GGG ATTTA CCCACTACAGATATTATAGAG CCCTTTTTTTGCTAC Spy49_0347 361343 - 361612 + | hypothetical protein TERM 457 361916 - 361940 + F 100 -12.9 -4.24204 | TTAAATTATTTAGTT GCCACGCTATC TTT GATAACGTGGC TTTTCGGTGTAGGTG Spy49_0348 362242 - 362646 + | hypothetical protein TERM 458 362823 - 362843 + T 100 -13.3 -5.2696 | CCCTTTAGTAGTCAG GCCACCTCT GAT AGGGGTGGC TTTTTTGGATTTTAG TERM 459 363201 - 363169 - T 89 -12.2 -3.2827 | opp_overlap 363168 363171 363177, overlap 363171 363177 GCACGCAATCAGCAA CACAAAAAGCACCC CTGAC AGGTGCTTTTTGTA CTTTAGCCAACCTCA TERM 460 363199 - 363171 - T 91 -12.6 -3.20494 | opp_overlap 363168 363171 363177, overlap 363169 363177 ACGCAATCAGCAACA CAAAAAGCACCC CTGAC AGGTGCTTTTTG TACTTTAGCCAACCT TERM 461 363171 - 363199 + T 84 -11.9 -2.90615 | opp_overlap 363171 363169 363177, overlap 363168 363177 ACGCAATCAGCAACA CAAAAAGCACC CCTGACA GGTGCTTTTTG TACTTTAGCCAACCT TERM 462 363193 - 363177 - T 83 -5.8 -5.1244 | opp_overlap 363171 363168 363177, overlap 363171 363169 TCAGCAACACAAAAA GCACCC CTGAC AGGTGC TTTTTGTACTTTAGC TERM 463 363177 - 363193 + T 77 -5.1 -5.04325 | opp_overlap 363177 363171 363169, overlap 363171 363168 TCAGCAACACAAAAA GCACC CCTGACA GGTGC TTTTTGTACTTTAGC Spy49_0349c 363621 - 363232 - | hypothetical protein TERM 464 364102 - 364077 - R 93 -7.7 -5.60993 | TTGGGCATAAAAAAA GGCTATCAA CTTAACGT TTGATAGCC TAAAGAAGTAGTATA TERM 465 364176 - 364159 - R 77 -3.3 -5.4833 | opp_overlap 364160, overlap 364160 GCAGGCAAGAAAAAA GGCACCC AATT GAGTGCT ATTTTTTTATACATA Spy49_0350c 365032 - 364340 - | hypothetical protein Spy49_0351c 365372 - 365190 - | hypothetical protein TERM 466 365315 - 365327 + g 82 -7.7 -4.63928 | AATTAAAACCTTCAG GACGA CAA TCGTC TTTTTCAAATGATAT TERM 467 365383 - 365418 + r 82 -8.6 -3.97443 | opp_overlap 365381, overlap 365382 TACATAATATAACCT CCTTTTCTAAATAT ATTATTTC ATATTTAGAAAGGG TATTTTTACAGTTTT Spy49_0352c 365696 - 365511 - | hypothetical protein Spy49_0353c 366108 - 365740 - | hypothetical protein Spy49_0354c 366256 - 366083 - | hypothetical protein Spy49_0355c 367032 - 366619 - | hypothetical protein TERM 468 367110 - 367129 + r 100 -9.4 -5.97979 | ACCCAAGAGTCCTTT TCCTACAA AGTT TTGTAGGA TTTTTTTGTTATTCT Spy49_0356c 367644 - 367138 - | hypothetical protein Spy49_0357c 368010 - 367681 - | hypothetical protein Spy49_0358c 368602 - 368000 - | Prophage ps3 protein 07 TERM 469 368682 - 368629 - R 80 -6.9 -4.54727 | gap 1, opp_overlap 368629 368648, overlap 368645 TCTGCTAAATTAAAA GAACCCACCAACAAAA-CTAGCTAAT CTT AATAGCTTGGTTTTGTCCGCGAGTTC TTCTCTTTTAGACTT Spy49_0359c 369134 - 368868 - | hypothetical protein Spy49_0360c 369488 - 369315 - | phage protein TERM 470 369513 - 369544 + r 95 -12.6 -3.61356 | TCCGAATTTTATACG TTTTATACGTTTGG TTTT TCAAACGTATAAAA TTTAAAGTCAGTCGT Spy49_0361c 371464 - 369776 - | Putative DNA primase-phage associated TERM 471 370940 - 370950 + gr 70 -5.4 -4.4195 | CTCCTTTAGTTGACT TTGC CTA GCAA TTTTGTAAAGTGTAT Spy49_0362c 372290 - 371433 - | Putative replication protein Spy49_0363c 372712 - 372434 - | hypothetical protein Spy49_0364c 372828 - 372715 - | hypothetical protein Spy49_0365c 373249 - 373055 - | hypothetical protein Spy49_0366c 373455 - 373246 - | hypothetical protein TERM 472 373854 - 373867 + r 91 -4.5 -5.84381 | AAGCCTTGCTGATTG GTCTC TGCT GAGGC TTTTTTTGTTGATCC Spy49_0367c 374228 - 373980 - | hypothetical protein Spy49_0368c 374429 - 374244 - | hypothetical protein TERM 473 374461 - 374479 + H 72 -8.2 -3.37531 | opp_overlap 374463, overlap 374476 ATTTTATTGTTCAAT CACACAAT TTA GTTGTGTG TTAATCTCATTTTAG Spy49_0369 374597 - 375265 + | Hypothetical phage associated protein SpyM3_0964 TERM 474 375393 - 375376 - g 100 -9.9 -5.69262 | opp_overlap 375373 GTACAAAAAGAAAAA CGGTACA ATTG TGTACCG TGCTAATATCTATCT Spy49_0370 375347 - 376492 + | Integrase TERM 475 376789 - 376806 + F 72 -4.9 -4.7878 | overlap 376790 GTCTTTTAATTAATT TGTCAAT AATA ATTGACG TTTATTTTGTAAGTG Spy49_0371 377362 - 377598 + | hypothetical protein Spy49_0372 377591 - 378289 + | Putative dehydrogenease / oxidoreductase Spy49_0373 378365 - 379324 + | hypothetical protein TERM 476 379387 - 379410 + F 90 -8.1 -5.00884 | opp_overlap 379380, overlap 379388 TTGAAAGACGTGTTT TCACGAGGG TTAATC CCCTCGTGC TTTTTTGGCAAAAAT TERM 477 379388 - 379409 + F 90 -11.6 -3.60048 | opp_overlap 379380, overlap 379387 TGAAAGACGTGTTTT CACGAGGG TTAATC CCCTCGTG CTTTTTTGGCAAAAA glpT 379657 - 380994 + | Glycerol-3-phosphate transporter TERM 478 381258 - 381273 + G 85 -9 -4.30576 | opp_overlap 381258 AAGTATCTGGACTAA CCATGC TTGA GCATGG TTTTCGTAGTGGAAA TERM 479 381273 - 381258 - g 70 -9 -3.16039 | opp_overlap 381258 AAGTATCTGGACTAA CCATGC TTGA GCATGG TTTTCGTAGTGGAAA TERM 480 381897 - 381878 - g 86 -12.2 -3.41302 | overlap 381869 381876 GCAACAGCTGAAACA GTGATGCG TCAG CGCATCAC CCAAAAACATATGGT TERM 481 382255 - 382239 - g 70 -2.9 -5.02476 | ACATTGGTGAAAAAA CAAAGGC TGG GCATCTG ACTTATATTGGAAAC glmU 381167 - 382549 + | N-acetylglucosamine-1-phosphate uridyltransferase / Glucosamine-1-phosphate N-acetyltransferase Spy49_0376 382580 - 383134 + | ADP-ribose pyrophosphatase Spy49_0377 383134 - 383385 + | hypothetical protein pfs 383405 - 384100 + | 5-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase Spy49_0379 384251 - 384592 + | hypothetical protein TERM 482 384667 - 384630 - T 100 -24.5 -4.57569 | opp_overlap 384630, overlap 384611 CTAGCCCCTCAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTGAGGAGACGC TERM 483 384630 - 384667 + T 100 -24.5 -4.56597 | opp_overlap 384611 384630 CTAGCCCCTCAAAAA GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC TTTTTGAGGAGACGC Spy49_0380c 385336 - 384689 - | Putative metal-dependent transcriptional regulator TERM 484 385120 - 385094 - G 71 -3.7 -4.8622 | CTGGTGAATCAAAAA TACCTCAATCA AGCGG TGTTTGCGGTA GAGGTTAGCAACAAG TERM 485 385833 - 385820 - g 83 -5.3 -5.25735 | opp_overlap 385832 TCAAAAAACGAAAAA CAAAG ATTA CTTTG CCGTGTCTGATGGCA mtsA 385590 - 386414 + | Metal ABC transporter substrate-binding lipoprotein precursor TERM 486 386423 - 386453 + F 83 -6.2 -5.05113 | AAAATAAGATAACAA TAAAGCACAGCGAT TTT AGTGTTGTGCTTTG TTTTATTTATGTAAA mtsB 386478 - 387203 + | ATP-binding protein MtsB TERM 487 387485 - 387508 + G 76 -4.6 -5.03314 | gap 1, opp_overlap 387477, overlap 387486 CATTAAAGGAGATAC G-GCTATTGGT ATC ACCTATAGCTC TTTTTTGGCACTGGG TERM 488 387486 - 387506 + G 82 -8.3 -4.14633 | opp_overlap 387477, overlap 387485 ATTAAAGGAGATACG GCTATTGGT ATC ACCTATAGC TCTTTTTTGGCACTG mtsC 387204 - 388058 + | Integral membrane protein MtsC, ABC transporter TERM 489 388106 - 388117 + T 74 -2.2 -5.43414 | AATAGTAGCAAATAA CATC AAAG GGTG TTTTTTATATGTCAT cypB 389012 - 388206 - | Putative cyclophilin-type protein ftsK 389229 - 391634 + | Cell division protein ftsK TERM 490 391674 - 391632 - T 100 -18 -3.02698 | opp_overlap 391637, overlap 391637 GTATTGCAGACAAAC TAAAAGAACCTGACGTCTCA TCA TGAGATGTCAGGTTCTTTTT TGGTGATGTCAGGCC TERM 491 391637 - 391669 + T 100 -20.1 -5.20216 | opp_overlap 391632 391637 GCAGACAAACTAAAA GAACCTGACGTCTCA TCA TGAGATGTCAGGTTC TTTTTTGGTGATGTC TERM 492 391669 - 391637 - T 100 -17.9 -4.65153 | opp_overlap 391637, overlap 391632 GCAGACAAACTAAAA GAACCTGACGTCTCA TCA TGAGATGTCAGGTTC TTTTTTGGTGATGTC Spy49_0386c 392054 - 391704 - | hypothetical protein TERM 493 392556 - 392515 - g 71 -6.5 -4.30844 | overlap 392518 ATTTCATCACTAAAA CACCACCAGCTGCTGTTCT TTTG AAAAAAGCTGCAGGTGTTG AAAAAGGATCAGGTA rplK 392301 - 392726 + | LSU ribosomal protein L11p (L12e) TERM 494 392868 - 392850 - g 71 -5.3 -4.5187 | GCTAAAAAAAGCAAA CAAATGC GTGCT GCACTTG AAAAAGTAGATAGCA rplA 392832 - 393521 + | LSU ribosomal protein L1p (L10Ae) TERM 495 393545 - 393530 - f 89 -3.3 -5.80364 | ACTTTAAGAAAAAAA TTAGG GCAACG CCTAA TCATAGCAAAAAGAC pyrH 393843 - 394571 + | Uridylate kinase rrf 394600 - 395157 + | Ribosome recycling factor Spy49_0392 395266 - 396123 + | S1 RNA binding domain TERM 496 396147 - 396127 - f 70 -3.9 -4.98436 | opp_overlap 396129, overlap 396128 396129 TTAATAGGATAAAAA TGCTTTGCC ACT GGCAAAGTT TTTTGTTACAATGAA TERM 497 396146 - 396128 - f 71 -7.4 -3.57977 | opp_overlap 396129, overlap 396127 396129 TAATAGGATAAAAAT GCTTTGCC ACT GGCAAAGT TTTTTGTTACAATGA TERM 498 396129 - 396145 + F 100 -10.9 -5.46657 | opp_overlap 396129 396128 396127 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 499 396145 - 396129 - f 81 -10.9 -2.73702 | opp_overlap 396129, overlap 396128 396127 AATAGGATAAAAATG CTTTGCC ACT GGCAAAG TTTTTTGTTACAATG TERM 500 396525 - 396515 - g 81 -5.4 -5.0707 | AAAGACAAAAAGAAA TTGC AGA GCAA TCAAAAGCAAACTTG mrsA 396196 - 396705 + | Peptide methionine sulfoxide reductase msrA Spy49_0395 396702 - 396917 + | hypothetical protein TERM 501 396947 - 396933 - f 85 -6.4 -5.252 | opp_overlap 396933 396945 TACGTGGATAAAAAA GAGTCA TAT CGACTC TTTTGAAGGGTTATC TERM 502 397803 - 397793 - g 70 -3.2 -4.91109 | overlap 397801 397802 GCCCCAGCAGAAAAA GAAG AAA CCTC TGCGCCAGCAGCACA Spy49_0396 397073 - 398242 + | Putative 42 kDa protein TERM 503 398278 - 398261 - f 93 -7 -5.52986 | opp_overlap 398261 398250 ATGCTATCAAAAAAA CTCACG TTTAGG CGTGAG TTTTTTGACAATTCT TERM 504 398261 - 398278 + F 88 -7.7 -5.06103 | opp_overlap 398261, overlap 398250 ATGCTATCAAAAAAA CTCACGT TTAG GCGTGAG TTTTTTGACAATTCT TERM 505 399058 - 399070 + G 74 -6.3 -4.42806 | opp_overlap 399054 399049 AAACCATTGAAGAGT TCTTC TCA GAAGA TTTCTTTAAGAGTAA TERM 506 400293 - 400279 - g 85 -2.8 -5.71712 | overlap 400284 TCGGACATAAAAAAA TCAAGG ATA CCTTTA TCGAAGAATTGCTCA Spy49_0398 398517 - 400328 + | 67 kDa myosin-crossreactive streptococcal antigen TERM 507 400349 - 400372 + F 100 -10.4 -5.243 | opp_overlap 400349 CTTAGAGTAGTTAAA GCTGATAAGT TTAG GCTTATCAGC TTTTTTGATGATTTA TERM 508 400372 - 400349 - f 82 -9.7 -3.70149 | opp_overlap 400349 CTTAGAGTAGTTAAA GCTGATAAG TTTAGG CTTATCAGC TTTTTTGATGATTTA TERM 509 400706 - 400734 + G 71 -6.7 -4.12532 | GTGGGTCGTGGCATG GTGGTCAACACAT CAG ATGTGGTGACAGC TTTATCTATGGCAGA phoH 400487 - 401539 + | Putative phosphate starvation-induced protein Spy49_0400 401585 - 402160 + | hypothetical protein Spy49_0401 402319 - 402816 + | hypothetical protein TERM 510 402975 - 402985 + G 73 -5.4 -4.56187 | TTTTTAGCATTTCAG CCAT CGA ATGG TTATTTTTACTTCTA TERM 511 403068 - 403078 + G 73 -5.4 -4.57755 | TAGTTGATTTGGCTA GTGA CTA TCAC TTTTCTATGCTAGCT TERM 512 403113 - 403124 + G 70 -5.8 -4.40993 | ATGCTAAGGATATGG CAGC AGGT GCTG TTTTGATGATTTCTG dgk 402797 - 403204 + | Diacylglycerol kinase era 403324 - 404220 + | GTP-binding protein Era Spy49_0404 404241 - 404717 + | hypothetical protein TERM 513 404789 - 404804 + T 95 -9 -5.63103 | GAAAGACGATGTTTC GAGAGC TTAT GCTCTC TTTTTTTGCTTCCAA TERM 514 404843 - 404863 + T 73 -4.1 -4.90525 | overlap 404845 ATTAAGTCTGAATAA TTTTGTTAA ATG TTAACAGGA TTTTCTTTCCAATTG Spy49_0405c 405277 - 405023 - | hypothetical protein Spy49_0406 405910 - 406092 + | hypothetical protein Spy49_0407c 406579 - 406430 - | Transposase Spy49_0408c 406998 - 406576 - | Transposase for insertion sequence element IS905 TERM 515 407000 - 407054 + H 76 -4.6 -5.14985 | gap 1 GTAAACTGAGTCATG GGAATAAATCTCTTTCTAGTGAAGT GTCGTA ACTCTACTATACAG-GATTTATTCC TTTTTGTGTGTTTAC Spy49_0409 407316 - 407543 + | Putative bacteriocin Spy49_0410 408295 - 408555 + | hypothetical protein Spy49_0411 408771 - 409142 + | hypothetical protein TERM 516 409321 - 409355 + F 87 -6.6 -5.46657 | TCATCTTTGCCAAAG CTCGTCATTTTATATG ATT TATATAGAATTACGGG TTTTTTGTTAGACTA TERM 517 409533 - 409545 + G 77 -7.7 -4.19953 | CAGATTCAGTCCATT CGTCT GAT AGACG TTTTGGAGTTGGCTA TERM 518 410184 - 410168 - g 81 -5.8 -5.08824 | overlap 410182 GTTTTATGGAAAAAA GGCTCC GTAAA AGAGCC TACTGAAGCCGATCA Spy49_0412 409427 - 410494 + | hypothetical protein Spy49_0413 410587 - 410985 + | hypothetical protein TERM 519 411316 - 411292 - T 100 -10.8 -5.06451 | opp_overlap 411290 GATTAGCTTAAAAAA GAACACTACC GAAAT GGTAGTGTCC ACTGATTTTAGGAGA Spy49_0414c 411602 - 411333 - | hypothetical protein mutR 412673 - 413539 + | Putative positive transcriptional regulator TERM 520 414371 - 414355 - g 77 -7.9 -4.30014 | opp_overlap 414354 TTTAGGAATTGAAAA GGGCGGT TCG ACCGTCC GTACTTACCGTAATG fpg 413711 - 414538 + | Formamidopyrimidine-DNA glycosylase Spy49_0417 414517 - 415128 + | Dephospho-CoA kinase Spy49_0418 415318 - 416820 + | hypothetical protein TERM 521 416969 - 417001 + G 70 -5.6 -4.37734 | CAAAATCTAAAAGTG GCTTGGCTTGGTAA CTTCT TTACTGGGGCAAGC TTTTCACTTGTTATG Spy49_0419 416942 - 418135 + | Putative multi-drug resistance efflux pump Spy49_0420 418132 - 418278 + | LSU ribosomal protein L33p Spy49_0421 418324 - 418560 + | Preprotein translocase subunit SecG TERM 522 418565 - 418591 + F 89 -6.6 -5.60993 | opp_overlap 418564 CAAGTAAATAAGGAG TGAGCTTGAC AGAGTTA GTCTAGCTCA TTTTTTTATCAGCGA TERM 523 418783 - 418769 - g 76 -7.2 -4.26076 | overlap 418772 CCAGCCTTATTAAAA CCATTT CCA AAATGG AAAGTCAGAGCCTGT TERM 524 418867 - 418855 - g 87 -3.4 -5.79595 | CGTGAAAAGAAAAAA GAAC CTACT GTTC AGGGTGTTTTTCGTG vacB 418654 - 420987 + | Putative exoribonuclease R smpB 420990 - 421457 + | SsrA-binding protein TERM 525 421512 - 421484 - g 71 -6.8 -4.0251 | opp_overlap 421484 421490, overlap 421487 ATTATGATAACTAAA GGACAAGTTCGT TTGTT ACGAACTTATTC TTATGATAGCAACTT TERM 526 421490 - 421506 + G 71 -6.6 -4.05004 | opp_overlap 421487 421484, overlap 421484 ATAACTAAAGGACAA GTTCGT TTGTT ACGAAC TTATTCTTATGATAG TERM 527 422029 - 422017 - g 79 -9.1 -3.89524 | opp_overlap 422017 ACCTGATTCTAGAAA GGTGG TAG CCACC TATGATATTAGTCCT Spy49_0424 421472 - 422182 + | Putative glutamine cyclotransferase TERM 528 422268 - 422248 - T 95 -4 -6.26417 | opp_overlap 422248 422265 422266 TAGCACAAAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG TERM 529 422248 - 422268 + T 79 -4 -5.44119 | opp_overlap 422248, overlap 422265 422266 TAGCACAAAAAAAAA CAGAGTTA GTTCA TATCTCTG TTTTTTTAAAATAGG pcp 422947 - 422300 - | Pyrrolidone-carboxylate peptidase Spy49_0426c 423924 - 422998 - | hypothetical protein Spy49_0427c 424607 - 423924 - | hypothetical protein Spy49_0428c 425744 - 424818 - | Putative sugar transferase TERM 530 425854 - 425879 + r 95 -14.9 -3.29038 | opp_overlap 425854, overlap 425857 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 531 425879 - 425854 - R 100 -14.9 -5.42198 | opp_overlap 425854 425857 GGTTAAAAAATAAAA CAACAGAAGCT TTAA AGCTTCTGTTG TTAATAGTATTAGTT TERM 532 425857 - 425876 + r 90 -10.8 -3.77553 | opp_overlap 425854, overlap 425854 TAAAAAATAAAACAA CAGAAGCT TTAA AGCTTCTG TTGTTAATAGTATTA gloA 426266 - 425889 - | Lactoylglutathione lyase Spy49_0430c 426942 - 426277 - | Putative NAD(P)H-flavin oxidoreductase pepQ 428076 - 426991 - | Putative Xaa-Pro dipeptidase TERM 533 428131 - 428116 - H 79 -4 -5.40474 | ATTTTTTCAAAAAAA GCTTAA AAAA TCAAGC TTCGAGTTAATGTTT ccpA 428250 - 429251 + | Catabolite control protein A TERM 534 429336 - 429309 - f 84 -11.4 -3.01791 | opp_overlap 429315, overlap 429315 ACTGTTTCTTCAATA CTAAAATCAGCC TTAG GGCTGATTTTTG CATGTCTTAGTGAAA TERM 535 429315 - 429330 + F 93 -9 -4.74453 | opp_overlap 429315 429309 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA TERM 536 429330 - 429315 - f 89 -9 -4.4261 | opp_overlap 429315, overlap 429309 TCTTCAATACTAAAA TCAGCC TTAG GGCTGA TTTTTGCATGTCTTA Spy49_0433 429382 - 430380 + | Putative sugar transferase Spy49_0434 430382 - 431716 + | Putative glucosyl transferase TERM 537 431934 - 431961 + F 100 -10.6 -6.09196 | TAAGGTGGAACCACG CTGATTGCGTCC TTTG GGATGCGGTCAG TTTTTTTGTTTTGGA thrS 432138 - 434081 + | Threonyl-tRNA synthetase TERM 538 434089 - 434118 + F 71 -6.5 -4.1673 | overlap 434095 AAGCTTAATCAATGG CAAAAAGAGGTCC TTAT GGGCTTCTTTTTC TTTCTTAAAAAATTA TERM 539 434095 - 434112 + F 84 -5.5 -5.47159 | overlap 434089 AATCAATGGCAAAAA GAGGTCC TTAT GGGCTTC TTTTTCTTTCTTAAA TERM 540 434138 - 434152 + F 79 -4.2 -5.36965 | opp_overlap 434135 434140, overlap 434140 434146 TTAAAAAATTAAGCA AACGGT TGC ACCGTC TTTTTTATGGTGTTA TERM 541 434150 - 434140 - f 71 -6.8 -4.1144 | opp_overlap 434140 434138 434146, overlap 434135 AAAAAATTAAGCAAA CGGT TGC ACCG TCTTTTTTATGGTGT TERM 542 434140 - 434150 + F 74 -6.8 -4.30057 | opp_overlap 434135 434140, overlap 434138 434146 AAAAAATTAAGCAAA CGGT TGC ACCG TCTTTTTTATGGTGT TERM 543 434267 - 434257 - g 78 -2.6 -5.42259 | CCACCTTCAAAAAAA TTTT TCC AAAA CCATTAAAGAGCCAG tagH 434222 - 435214 + | Teichoic acid export ATP-binding protein tagH Spy49_0437 435216 - 436034 + | hypothetical protein Spy49_0438 436036 - 436821 + | hypothetical protein TERM 544 436910 - 436886 - f 81 -10 -3.49135 | opp_overlap 436886, overlap 436882 TAGATAATGAAGGAA GGCAGCTGTT GTAAA AACGGCTGCC TTTTTTTGTGATGGT TERM 545 436886 - 436910 + F 100 -12.2 -5.67967 | opp_overlap 436886 436882 TAGATAATGAAGGAA GGCAGCTGTT GTAAA AACGGCTGCC TTTTTTTGTGATGGT Spy49_0439 437022 - 437171 + | dihydroxyacetone kinase TERM 546 437191 - 437242 + F 70 -8.4 -3.17391 | gap 1, opp_overlap 437180 437173 437197, overlap 437191 437193 437195 437197 437207 TAAAGACAAGGTTTG TCAATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTA ATTCTTTATTCTATA TERM 547 437191 - 437243 + F 74 -6.8 -4.31697 | gap 2, opp_overlap 437180 437173 437197, overlap 437191 437193 437195 437197 437207 TAAAGACAAGGTTTG TCA-ATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTCTAA TTCTTTATTCTATAT TERM 548 437193 - 437240 + F 83 -11 -3.12788 | gap 1, opp_overlap 437173 437197, overlap 437191 437191 437195 437197 437207 AAGACAAGGTTTGTC AATACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTGTC TAATTCTTTATTCTA TERM 549 437195 - 437238 + F 90 -13.6 -3.10303 | gap 1, opp_overlap 437173 437197, overlap 437193 437191 437191 437197 437207 GACAAGGTTTGTCAA TACCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGGTG TCTAATTCTTTATTC TERM 550 437236 - 437197 - f 85 -11.8 -3.02461 | gap 1, opp_overlap 437195 437193 437191 437191 437197 437207, overlap 437173 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 551 437197 - 437236 + F 93 -14 -3.08961 | gap 1, opp_overlap 437173 437197, overlap 437195 437193 437191 437191 437207 CAAGGTTTGTCAATA CCATAAAAAAGTTAAG-TG TCA CAGCTTAGCTTTTTTATGG TGTCTAATTCTTTAT TERM 552 437207 - 437226 + F 70 -2.2 -5.35459 | gap 1, opp_overlap 437197, overlap 437197 437195 437193 437191 437191 CAATACCATAAAAAA GTTAAG-TG TCA CAGCTTAGC TTTTTTATGGTGTCT TERM 553 438620 - 438604 - gf 71 -8.7 -3.09327 | opp_overlap 438593, overlap 438592 GGACGCTATGGAATA GCTGCTA TAG CAGCAGC TGGTGGCCAAGGATT Spy49_0440 437566 - 438714 + | Acetyl-CoA acetyltransferase TERM 554 438729 - 438719 - gf 93 -5.4 -5.63517 | TGCCCAAATAAAAAA GCTA TCG TAGC CGATCAGATAAGCTT TERM 555 439229 - 439219 - gf 89 -6.8 -5.27477 | opp_overlap 439219 ATGGCAAGCAAAAAA GGTG AGT CACC TTTACCTTTTACCGA Spy49_0441 438671 - 439918 + | Long-chain-fatty-acid--CoA ligase TERM 556 440474 - 440503 + G 100 -13.7 -4.06419 | opp_overlap 440462 AGACGCCCAAGCTCT GGCCCTTTTTTTG AGGT CTAAAAAAGGGCC TTGTTTGTGGCGGCA Spy49_0442 439974 - 441008 + | hypothetical protein vicR 441170 - 441880 + | Two-component response regulator TERM 557 442164 - 442154 - g 87 -3.2 -5.7946 | overlap 442137 TGCCCAAGAAAAAAA TCGC TTG GCAA GTATTTTGGCTTATA TERM 558 443136 - 443168 + G 75 -10 -3.23274 | overlap 443141 443143 ATCTGGGCTAAGAGT GACTATGGTAAAGG ATCGA CCTTTACTATTGTC TTGCCTTATGAAAAA TERM 559 443195 - 443184 - g 72 -4.4 -4.72272 | TTGCCTTATGAAAAA GATG CAGC CATC TATGAAGAATGGGAG vicK 441873 - 443225 + | Two-component sensor histidine kinase vicX 443229 - 444038 + | Zn-dependent hydrolase (beta-lactamase superfamily) TERM 560 444068 - 444100 + F 100 -12.1 -5.62219 | opp_overlap 444068 444067 444070 AGAGAATATGCAAAG TAGCGCTGATTGGTG ATA TACCAGTCAGGGCTA TTTTTTTGATGTCTT TERM 561 444100 - 444068 - f 73 -9.2 -2.87362 | opp_overlap 444068, overlap 444067 444070 AGAGAATATGCAAAG TAGCGCTGATTGGT GATAT ACCAGTCAGGGCTA TTTTTTTGATGTCTT TERM 562 444283 - 444338 + F 70 -7.2 -3.86903 | gap 2, opp_overlap 444283, overlap 444282 CTAAAAACAAAATAG CTCTATACTATCTGTAGTGGGACTGT AGTGGG AAATTCCC-CT-CAGATAGTGTAGAG TCTTTTGATTGTATG TERM 563 444431 - 444404 - f 73 -4.2 -4.85267 | opp_overlap 444404 ATAAATCACGAAAAA TCCACTTAGA GTCGGTTT TCTAGGTGGA TTTTTGGTATACTAA TERM 564 444404 - 444431 + F 83 -7.1 -4.82667 | opp_overlap 444404 ATAAATCACGAAAAA TCCACTTAGAG TCGGTT TTCTAGGTGGA TTTTTGGTATACTAA acpA 444483 - 445175 + | Ribonuclease III TERM 565 446888 - 446876 - g 100 -5.5 -5.78622 | TTATTTGAAAAAAAA TCGCC AAG GACGA GCAACTTTTTTACCT smc 445176 - 448715 + | Putative chromosome segregation SMC TERM 566 448709 - 448749 + T 85 -12.1 -3.10641 | opp_overlap 448720, overlap 448720 AGCTCAAGAGATGAC CAATTAAAAAACAGAAGGG AGT TCCTTCTGTTTTTTGGATG TTCGGTCATAAGTTA TERM 567 448720 - 448738 + T 100 -9.6 -5.1615 | opp_overlap 448720, overlap 448709 TGACCAATTAAAAAA CAGAAGGG AGT TCCTTCTG TTTTTTGGATGTTCG TERM 568 448738 - 448720 - T 95 -8.9 -5.30155 | opp_overlap 448720 448709 TGACCAATTAAAAAA CAGAAGG GAGTT CCTTCTG TTTTTTGGATGTTCG Spy49_0449c 449814 - 448963 - | Putative positive regulator TERM 569 449884 - 449839 - H 88 -7.9 -5.06414 | overlap 449843 CTTTCCCAACAAAAA TCAATTCAGTTTTTTTTTATT GTAC AATAAATAAAAACTGAAAGGA AGTCCACTTATGAAG TERM 570 449880 - 449843 - H 93 -11.7 -3.9407 | overlap 449839 CCCAACAAAAATCAA TTCAGTTTTTTTTTATT GTAC AATAAATAAAAACTGAA AGGAAGTCCACTTAT TERM 571 449970 - 449987 + H 75 -8.5 -3.43109 | opp_overlap 449970, overlap 449968 TTGGTGGGTAAGTTA CTTAGGT GTAT ACCTAAG TCTTTAGATACTCTA TERM 572 450007 - 449987 - H 84 -11.3 -3.12668 | opp_overlap 449968 449987 TAGGTGTATACCTAA GTCTTTAGA TAC TCTAAAGAC TTATAGGTAATGGTT TERM 573 449987 - 450007 + H 89 -11.3 -3.3854 | opp_overlap 449987, overlap 449968 TAGGTGTATACCTAA GTCTTTAGA TAC TCTAAAGAC TTATAGGTAATGGTT aroE.2 450088 - 450960 + | Shikimate 5-dehydrogenase Spy49_0451 450957 - 451793 + | hypothetical protein Spy49_0453 451795 - 452529 + | hypothetical protein Spy49_0454 452522 - 453508 + | hypothetical protein Spy49_0455 453518 - 454717 + | Archaeal S-adenosylmethionine synthetase Spy49_0456 454701 - 455603 + | hypothetical protein Spy49_0457 455724 - 456713 + | hypothetical protein Spy49_0458 457116 - 457382 + | hypothetical protein Spy49_0459 457406 - 458563 + | UDP-glucose dehydrogenase TERM 574 458975 - 458988 + G 70 -3.1 -4.9218 | ACTAATGTTATCTTG GCATT TATG AGTGC TTTTTCTAGTCCATC TERM 575 459048 - 459038 - g 74 -4 -5.07107 | GAAATTGTTAAAAAA GATA GTA TATC ACAACTTAATTCATT Spy49_0460 458648 - 459817 + | Putative efflux protein TERM 576 459905 - 459946 + T 100 -8.9 -6.02919 | opp_overlap 459904 459905 TTTTTCAAAGTAAAG GCACTAAGTTGATCTGA CTTACACA TCTTATCAACTTAGTGC TTTTTTTATTTCTAG TERM 577 459946 - 459905 - T 77 -9.6 -3.03151 | opp_overlap 459905, overlap 459904 TTTTTCAAAGTAAAG GCACTAAGTTGATCTGAC TTACAC ATCTTATCAACTTAGTGC TTTTTTTATTTCTAG Spy49_0461c 460167 - 459958 - | hypothetical protein Spy49_0462c 461815 - 460157 - | hypothetical protein TERM 578 460860 - 460882 + g 76 -3.4 -5.31275 | opp_overlap 460859 460860, overlap 460862 CGTTCAGTTGAGAAT TCGGAATCTA AAA TAGTTTCCAA TTTTTTGTGGTAAGC TERM 579 461045 - 461071 + g 100 -11.7 -5.30199 | AAGACTGCTTTCTAA CTCCAGCTTAG TATTT CTAAGTTGGAG TTTTTGTTGATTTTT Spy49_0463c 462030 - 461806 - | hypothetical protein Spy49_0464c 462924 - 462034 - | hypothetical protein Spy49_0465 462958 - 463116 + | hypothetical protein Spy49_0466 463171 - 463473 + | hypothetical protein Spy49_0467 463602 - 463778 + | hypothetical protein TERM 580 464126 - 464143 + F 93 -7.7 -5.60993 | opp_overlap 464126 AGAAATATACCGAAA GCACTTC AAAG GAGGTGC TTTTTTTGTACCCCA Spy49_0468 464174 - 464626 + | Portal protein Spy49_0469 464692 - 465000 + | hypothetical protein TERM 581 465011 - 465033 + TF 77 -3.3 -5.4387 | ATTGATAAAAGGCAA GGGCGTATC AATTC GGCACGTCC TTTTTTAGTTTATCT Spy49_0470c 465426 - 465238 - | hypothetical protein TERM 582 465343 - 465369 + gF 100 -10.3 -4.98911 | TAGTTTATCGCTTGT TTTATCGCTTG AAGAA CGAGCGATAAA TTTATTTTTATGGTA Spy49_0471 465417 - 465740 + | Huntington interacting protein HYPE TERM 583 466192 - 466203 + G 70 -3 -5.10064 | opp_overlap 466192 TTCATTGGAATATAA TGAT GAAC ATCA TTTTTATGTGTTAAC Spy49_0473 465785 - 466456 + | Asparaginyl-tRNA synthetase Spy49_0474 466617 - 467864 + | hypothetical protein Spy49_0475 468092 - 468808 + | Microcin C7 self-immunity protein mccF TERM 584 469356 - 469338 - g 77 -6.1 -4.6575 | overlap 469330 ATAGAAATCATAAAA TGTCTTT ATGAA AAAGACA AAATAAATATGGAAC TERM 585 469830 - 469820 - g 78 -4 -5.31158 | TAAAAAAATCAAAAA GTTT TTT AAAC ATGAATTATATTCGA Spy49_0476 468984 - 469943 + | hypothetical protein TERM 586 470104 - 470072 - T 93 -8.7 -4.72272 | gap 1, opp_overlap 470072 CGTCTCTACTAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT TERM 587 470072 - 470104 + T 89 -8.7 -4.44187 | gap 1, opp_overlap 470072 CGTCTCTACTAAAAA TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA TTTCTGTTTGTCTAT Spy49_0477c 471116 - 470313 - | Transposase TERM 588 470971 - 470986 + g 72 -3.3 -5.04868 | AGAATGACCTTGATA GACTT CACACC AAGTC TTTTGTTTGCTTTGG Spy49_0478c 471439 - 471164 - | Transposase OrfA, IS3 family TERM 589 471564 - 471593 + G 81 -5.8 -5.03314 | AGTTCACTTCAAAAA CGGTCAGGTTAT CGAAAT ATAATCTGGCTG TTTTTTACGAATGGA Spy49_0479 471459 - 471677 + | hypothetical protein TERM 590 472482 - 472456 - g 80 -11 -3.38281 | overlap 472451 472459 CTACGGAAAATGCAA GACCTGAAATCA AAG TGATTTCAGACC AAGTCATTGGCCACT TERM 591 472479 - 472459 - g 79 -11.3 -2.54586 | overlap 472456 472451 CGGAAAATGCAAGAC CTGAAATCA AAG TGATTTCAG ACCAAGTCATTGGCC Spy49_0480 471744 - 472541 + | hypothetical protein Spy49_0481 472545 - 473369 + | hypothetical protein TERM 592 473479 - 473457 - g 76 -7.1 -4.14627 | overlap 473458 473470 TTTTGACAGAAACAA CTCAGAAAG AGGAG CTTTCTGAA AAAGCCAATGAGCAA ftsY 473369 - 474919 + | Signal recognition particle receptor protein FtsY alpha subunit TERM 593 474956 - 474929 - T 100 -14.3 -4.90906 | opp_overlap 474929 TTATAACAGCAAAAA CCAGTCTCGTT TTATTG AACGAGACTGG TTTTTAGTATGTCAT TERM 594 474929 - 474956 + T 100 -15 -4.85129 | opp_overlap 474929 TTATAACAGCAAAAA CCAGTCTCGTTT TATT GAACGAGACTGG TTTTTAGTATGTCAT Spy49_0483c 476340 - 474973 - | Putative drug resistance protein TERM 595 476089 - 476079 - G 72 -4.6 -4.81249 | TGCCAAATGTAAAAA GACC TGT GGCC ATAAAAAAGAGGGGT TERM 596 476283 - 476303 + g 85 -8.3 -4.43397 | overlap 476284 AAAAACCAATGAGTG CTATGGCGA TAA TCGCCATAA TTGTTTGTTTTGAAA TERM 597 476284 - 476302 + g 83 -11.8 -3.24954 | overlap 476283 AAAACCAATGAGTGC TATGGCGA TAA TCGCCATA ATTGTTTGTTTTGAA bglG 476668 - 477510 + | Putative transcription antiterminator TERM 598 477597 - 477575 - g 80 -10.6 -3.31416 | opp_overlap 477576, overlap 477570 AAAACAAATATTCAA CGTGTGACAC ACT GTGTAACACG TCTACGCTTAGTACT TERM 599 478576 - 478554 - g 73 -5.5 -4.65032 | opp_overlap 478567 CAAAGCAGAAACAAA CACGTCAAG TTGCC CTTGCCGCG GGGATTTCAGCTTTG TERM 600 479122 - 479110 - g 86 -7.7 -5.00616 | TGTTGCCTTAAAAAA CACAC GTG GTGTG GAAGTCTTGATTCAT Spy49_0485 477512 - 479374 + | Beta-glucoside permease IIABC component TERM 601 479975 - 479965 - g 76 -2.4 -5.38839 | GACAGAAAAAGAAAA GCTG AGC CTGC AAGATTTATACCAAG bglA 479393 - 480817 + | Putative beta-glucosidase TERM 602 480901 - 480875 - T 83 -6.7 -4.89729 | opp_overlap 480875 GATAAAACTCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT TERM 603 480875 - 480901 + T 95 -8.9 -5.54885 | opp_overlap 480875 GATAAAACTCAAAAA GCATTTGTTTT GATAA AAAACAAGTGC TTTTTTATTAGTCTT Spy49_0488c 481731 - 480916 - | hypothetical protein Spy49_0489c 482633 - 481731 - | hypothetical protein TERM 604 482600 - 482585 - G 71 -4 -5.00642 | overlap 482587 482592 TAATGGACATAAAAA TCGCAA ACCA TTGCAA GACACTGGGAGGAAG TERM 605 482693 - 482661 - H 71 -5.6 -4.50976 | gap 1, opp_overlap 482683, overlap 482663 482664 482666 TTCTAGATGATAAAA GAGGAGGCTGAAACA CGAA TGTT-CAGCCTCGAC TGATACGTTTTGTTA TERM 606 482690 - 482664 - H 79 -10.3 -2.91099 | gap 1, opp_overlap 482683, overlap 482663 482661 482666 TAGATGATAAAAGAG GAGGCTGAAACA CGAA TGTT-CAGCCTC GACTGATACGTTTTG TERM 607 483002 - 483018 + H 71 -3 -5.05153 | AACAATGCCAAAACG GAAGTG TTGTT TACTTC TTTCTTTTTTAAAAT Spy49_0490 483170 - 485302 + | hypothetical protein TERM 608 485399 - 485419 + GF 75 -6.9 -4.11394 | TGGCGGTCGCTTTTT TCCAAAAGA TGG TCATTTGGA TTTTAACCCTAGGAT TERM 609 485649 - 485620 - gf 76 -10.1 -2.84687 | opp_overlap 485629, overlap 485629 CTAATCATCATTATA GTTGCCAAACCTG TGGG CAGGTTTATCAAC GAAAAAGGCGTATCA Spy49_0491 485244 - 485726 + | SprT-like protein TERM 610 485717 - 485732 + F 79 -5.4 -5.07652 | opp_overlap 485717 485718, overlap 485712 485718 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA TERM 611 485732 - 485717 - f 77 -3.2 -5.47821 | opp_overlap 485717 485712 485718, overlap 485718 ACTTATGGAAAAAAA TCAGTC GTAA GACTGG TTTTATTTTGCGAAA Spy49_0493 485790 - 486062 + | hypothetical protein TERM 612 486147 - 486182 + F 77 -6.2 -4.7629 | overlap 486154 TTGATATGTAAGTAA GCGAGGGGTCTTATCA GCTA TGATGAGGCTTTTTGC TTTTTGACTTAGTAA TERM 613 486154 - 486175 + F 83 -5.9 -5.18355 | overlap 486147 GTAAGTAAGCGAGGG GTCTTATCA GCTA TGATGAGGC TTTTTGCTTTTTGAC ptsK 486367 - 487359 + | HPr kinase/phosphorylase lgt 487356 - 488135 + | Prolipoprotein diacylglyceryl transferase Spy49_0496 488157 - 488564 + | hypothetical protein TERM 614 488675 - 488665 - g 73 -5.4 -4.57341 | AATCGTGCTGAAAAA GCTT ATC AAGC CTACAAAGAAAGTCC Spy49_0497 488557 - 488985 + | hypothetical protein TERM 615 489138 - 489119 - g 100 -7.2 -6.02914 | gap 1 TTGACACAAAAAAAA GAGTCACGT AAA ACG-GACTC TGGAAGTTACATCAG Spy49_0498 489044 - 489313 + | hypothetical protein Spy49_0499 489631 - 490557 + | Putative protease Spy49_0500 490659 - 491945 + | Putative protease TERM 616 491961 - 492013 + F 100 -7.3 -7.14698 | gap 2, opp_overlap 491963 491980, overlap 491963 TAACAAGAAATACTA GAGGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCCTG TTTTTTTTTTTTTTT TERM 617 491963 - 492011 + F 100 -9.9 -5.06465 | gap 2, opp_overlap 491963 491980, overlap 491961 ACAAGAAATACTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTTTTTT TERM 618 492011 - 491963 - f 77 -9.9 -3.02508 | gap 2, opp_overlap 491963 491961, overlap 491980 ACAAGAAATACTAGA GGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCC TGTTTTTTTTTTTTT TERM 619 492125 - 492101 - f 89 -6.6 -5.64274 | opp_overlap 492101 TGAGTCATAAAAAAA GTGAAAAAAA GACGA TTTTTTCCAC TTTAATTTCGAATAG Spy49_0501 492146 - 492373 + | hypothetical protein Spy49_0502c 492610 - 492470 - | hypothetical protein TERM 620 492673 - 492648 - R 100 -14.9 -4.16842 | opp_overlap 492651 492670 GCTACTGTTAATAAA CCAGTCTTCAT GGTA ATGAAGACTGG TTAGAGATAATAAAA TERM 621 492651 - 492670 + r 72 -9.4 -2.72661 | opp_overlap 492648 ACTGTTAATAAACCA GTCTTCAT GGTA ATGAAGAC TGGTTAGAGATAATA lysS 494239 - 492746 - | Lysyl-tRNA synthetase (class II) TERM 622 493889 - 493912 + g 79 -5.2 -5.07107 | GACTTCGCCTTCAAC GCCGATAAAG TCGC CTAAATCGGC TTTTTTGAAGATTTC TERM 623 495047 - 495061 + G 73 -7.1 -4.02334 | opp_overlap 495047 495046 GTCGTCAGCTAAAAC CAGGC ACTAA GCCTG TTTATGATGTGGCTA Spy49_0504 494413 - 495315 + | hypothetical protein Spy49_0505c 496046 - 495423 - | Phosphoglycerate mutase Spy49_0506c 496866 - 496387 - | Putative transcription regulator TERM 624 496901 - 496924 + r 84 -4 -5.58454 | opp_overlap 496901 CTAAACATAAAAAAA TGGTATAA CGACATTA TTATACCA TTTTTTTAATGTAAG TERM 625 496924 - 496901 - R 91 -4.7 -5.88197 | opp_overlap 496901 CTAAACATAAAAAAA TGGTATAAC GACATT ATTATACCA TTTTTTTAATGTAAG Spy49_0507c 497520 - 496957 - | Thiamin transporter TERM 626 497548 - 497527 - R 90 -8.1 -5.36441 | opp_overlap 497525 TGGTGACATAAAAAA CTCCTTTTG TGCA CAAAAAGAG TATCGCTTTCCAATC TERM 627 497693 - 497713 + r 83 -8.3 -4.36127 | opp_overlap 497692 497693, overlap 497685 ATATGATGAGATAAT CTCCTTGTC AAG GATAAGGGG TTTTAAATTATTGAC TERM 628 497786 - 497767 - R 85 -4.3 -5.75599 | opp_overlap 497767 TAAACTATAAAAAAA GATTAGC CATGAT GCTAACC TCTTAATTGTTGGAG Spy49_0508c 498637 - 497789 - | Putative endolysin, phage associated TERM 629 499175 - 499185 + G 73 -5.4 -4.6265 | CCTTGGGTCTTTTGG CAAG TTA CTTG TTTTGTGCTTGTTCT Spy49_0509 498962 - 499465 + | Permease component SCO2325 of the cbiOQ-type ABC transporter Spy49_0510 499449 - 499835 + | hypothetical protein TERM 630 499883 - 499842 - T 100 -20.7 -2.8742 | opp_overlap 499847 499852, overlap 499845 499852 TTTAAATAGTAACTA TAATATAAAATAGACTTGG CACG CCAAGTCTATTTTATATTA ACCAAGAAGTGCTTT TERM 631 499880 - 499845 - T 100 -18 -3.57161 | opp_overlap 499847 499852, overlap 499842 499852 AAATAGTAACTATAA TATAAAATAGACTTGG CACG CCAAGTCTATTTTATA TTAACCAAGAAGTGC TERM 632 499847 - 499878 + T 100 -16.2 -3.01791 | opp_overlap 499845 499842 499852, overlap 499852 ATAGTAACTATAATA TAAAATAGACTTGG CACG CCAAGTCTATTTTA TATTAACCAAGAAGT TERM 633 499873 - 499852 - T 100 -11.7 -4.76193 | opp_overlap 499847 499852, overlap 499845 499842 AACTATAATATAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA TERM 634 499852 - 499873 + T 100 -11.7 -4.66537 | opp_overlap 499852 499845 499842, overlap 499847 AACTATAATATAAAA TAGACTTGG CACG CCAAGTCTA TTTTATATTAACCAA Spy49_0511c 500360 - 499881 - | Glutathione peroxidase pepF 502152 - 500353 - | Putative oligoendopeptidase F TERM 635 500630 - 500618 - G 70 -9.1 -3.1876 | AAGCCCATGTAGTAA TGCGC TTG GCGCA TCCAGGTAAGAGCTG ppc 502311 - 505109 + | Phosphoenolpyruvate carboxylase TERM 636 505990 - 506010 + G 80 -4.7 -5.25656 | overlap 505992 505994 CCTGTTTTTGGCTAT GTCGCTAAA CGT TTTAGTGCC TTTTTTAATCCTTTT ftsW 505279 - 506187 + | Cell division protein ftsW TERM 637 506593 - 506559 - f 100 -19 -3.69338 | opp_overlap 506569, overlap 506569 AAGCAATTTCAATAA TATTCTAAAATCTCCT TTA AGGAGATTTTAGAATA TAAACAATCCCAGTT TERM 638 506583 - 506569 - f 85 -8.6 -4.21314 | opp_overlap 506569, overlap 506559 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAAAC TERM 639 506569 - 506583 + F 85 -8.6 -4.16943 | opp_overlap 506559 506569 AATAATATTCTAAAA TCTCCT TTA AGGAGA TTTTAGAATATAAAC tufA 506912 - 508108 + | Translation elongation factor Tu TERM 640 508180 - 508164 - f 90 -11.5 -3.65314 | opp_overlap 508164 CTTAAGTTTGAAGAA GCCCCCA ATT CGGGGGC TTTTTGCTATCTTAA TERM 641 508164 - 508180 + F 100 -10.8 -4.87807 | opp_overlap 508164 CTTAAGTTTGAAGAA GCCCCC AATTC GGGGGC TTTTTGCTATCTTAA tpi 508349 - 509107 + | Triosephosphate isomerase TERM 642 509154 - 509108 - T 100 -16.4 -3.34013 | gap 1, opp_overlap 509108 509122, overlap 509122 GATTTCCTTAACTAA GTCATCTAAAAAAAGAAAAGG TTAAAT CCTTTTCT-TTTTTAGATGAC TTAACTCTTACTACG TERM 643 509108 - 509154 + T 100 -16.4 -3.20348 | gap 1, opp_overlap 509108 509122, overlap 509122 GATTTCCTTAACTAA GTCATCTAAAAAAAGAAAAGG TTAAAT CCTTTTCT-TTTTTAGATGAC TTAACTCTTACTACG TERM 644 509122 - 509141 + T 84 -6.5 -5.10497 | opp_overlap 509108 509122, overlap 509108 AGTCATCTAAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT TERM 645 509141 - 509122 - T 87 -6.5 -5.47821 | opp_overlap 509122 509108, overlap 509108 AGTCATCTAAAAAAA GAAAAGG TTAAAT CCTTTTC TTTTTTAGATGACTT murN 510442 - 509207 - | Putative peptidoglycan branched peptide synthesis protein, alanine adding enzyme TERM 646 509405 - 509419 + g 70 -8.6 -3.41051 | CTTGTGAATTGCCTT GAGCAT AGC ATGCTC TTGTAATAGAGCTGG TERM 647 510007 - 510018 + g 73 -5.8 -4.58663 | opp_overlap 509995 AAACAGGTTCACCCT CAGG ATAG CCTG TTTTTAAACCGTCAT murM.1 511655 - 510429 - | Putative peptidoglycan branched peptide synthesis protein, serine/alanine adding enzyme TERM 648 510819 - 510829 + g 79 -3.2 -5.50313 | TAAATCTTTTTGTAG CCGT GCA ATGG TTTTTTGATTTTCTG TERM 649 510896 - 510920 + g 95 -3 -6.09888 | gap 2, overlap 510896 510897 CTTGTTCTGCTAAGG C-CTTG-TCCAA CTG TTGGATCAAGAG TTTTTTTTGTTCAGG TERM 650 511029 - 511039 + g 79 -3.2 -5.52384 | AAGGATAATGTCTTT TCGA TTC TCGG TTTTTTTCATCAAGG Spy49_0519c 512464 - 511655 - | hypothetical protein TERM 651 512002 - 512016 + g 83 -7.2 -4.70887 | opp_overlap 511999 512002 CAGGTTCATCAATCA TCATCA TTT TGATGA TTTCTTTATTGGTCA TERM 652 512649 - 512622 - R 100 -14.4 -4.90266 | opp_overlap 512624 512629 TGTAGTAACTAAAAA GATTGAAGAAAG TACT CTTTCTTCAATC TTAGAATGGAGACAA TERM 653 512624 - 512647 + r 84 -11.2 -3.05844 | opp_overlap 512622, overlap 512629 TAGTAACTAAAAAGA TTGAAGAAAG TACT CTTTCTTCAA TCTTAGAATGGAGAC TERM 654 512861 - 512835 - R 70 -3.6 -4.86385 | overlap 512843 512850 AGGCTCAAAAATAAA GCATAGAATTCC AAA GGAAGTCGCTGC CATAAGCATCACCTA Spy49_0520c 514221 - 512920 - | HD domain protein TERM 655 513233 - 513211 - G 76 -9.2 -3.75015 | ATAATCTGGATCAAA GCCAACTGAT TCG ACCAATTGGC GCAAGCGTTCTAACT TERM 656 513704 - 513692 - G 77 -4.9 -4.91109 | TTGGCAGCAGAAAAA TAAGA ATC TCTTA AAAGGTAATCCATAC Spy49_0521 514303 - 514689 + | hypothetical protein TERM 657 514848 - 514874 + F 84 -6 -5.27335 | opp_overlap 514835 514869 514871 AATCTTAAACAGCGA GACTTGTTTA AGAAAAA TAAACAGGTC TTTTTATTTGAACAA TERM 658 514907 - 514869 - f 83 -6.2 -5.05606 | opp_overlap 514848, overlap 514871 TTTAAGAAAAATAAA CAGGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACCAA GGAGGTACTAATTTG TERM 659 514905 - 514871 - f 100 -11 -4.13123 | opp_overlap 514848, overlap 514869 TAAGAAAAATAAACA GGTCTTTTTATTTGAA CAA CTAAAATAAAAAGACC AAGGAGGTACTAATT pacL 514920 - 517601 + | Putative calcium-transporting ATPase TERM 660 517615 - 517639 + T 100 -13 -5.67967 | opp_overlap 517615 AATAGGTGCTAAAAA GGTTTGAGAC GATAG GTCTCAAACC TTTTTTTATAATCGT TERM 661 517639 - 517615 - T 100 -13 -4.59511 | opp_overlap 517615 AATAGGTGCTAAAAA GGTTTGAGAC GATAG GTCTCAAACC TTTTTTTATAATCGT regR 518682 - 517687 - | Putative transcriptional regulator Spy49_0524c 520653 - 518746 - | hypothetical protein TERM 662 520730 - 520679 - R 95 -8.9 -5.07652 | gap 1 CTTTCCAAAAGAAAA GAGACCTCATCATGTGCTTAGGAA CTATT TCCCTATGCTCATAAC-AGGTCTC TGTGAACCATTAAGC agaD 521561 - 520740 - | Putative PTS dependent galactosamine IID component TERM 663 521516 - 521506 - G 73 -6.8 -4.24342 | opp_overlap 521504 521506 521508 TTTTGTAGGAAGAAA GCTC TCA GAGC TGTTTTGAGGTAATC agaW 522330 - 521548 - | Putative PTS dependent N-acetyl-galactosamine- IIC component TERM 664 521899 - 521888 - G 70 -5.8 -4.39287 | CCAAGGATAGCAAAA GACC AAAT GGTC CCATTAGCAGCGAAT agaV 522837 - 522349 - | PTS system, IIB component TERM 665 522427 - 522417 - G 79 -6.8 -4.56597 | opp_overlap 522405 TTTTGGTGTTAAAAA CCAC TTG GTGG TCATGGGCTAAGCAA ugl 524072 - 522873 - | Putative unsaturated glucuronyl hydrolase TERM 666 523639 - 523655 + g 82 -10.9 -3.50393 | TGGACTAATTTGTCG GCTGCTT TCA AAGCAGC TTCTCTAGACTCAGG agaF 524509 - 524072 - | Putative PTS dependent N-acetyl-galactosamine- and galactosamine IIA component TERM 667 525532 - 525546 + G 82 -6.4 -4.87665 | overlap 525534 GGACAACAGAAGACT TAGCTG GTC CAGCTG TTTTTCTAGCTAGCG TERM 668 525534 - 525544 + G 71 -6.8 -4.06182 | overlap 525532 ACAACAGAAGACTTA GCTG GTC CAGC TGTTTTTCTAGCTAG Spy49_0530 524844 - 525638 + | Gluconate 5-dehydrogenase TERM 669 525702 - 525689 - g 79 -6.7 -4.50193 | ATTAATTAATGAAAA TAGCC AAGC GGCTA AAAATGGTATTATTT Spy49_0531 525663 - 526304 + | Sugar-phosphate isomerase kdgK 526333 - 527334 + | 2-dehydro-3-deoxygluconokinase kdgA 527339 - 527974 + | 4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase TERM 670 528616 - 528651 + G 73 -7 -4.20148 | opp_overlap 528650 CTCGAAGCGTCAGGA TGTTTTGTTGGCGTTG GAGA CAACGCAAATAAAAGA TTATTTTGAAATAAT TERM 671 528667 - 528650 - g 79 -5.7 -4.94962 | opp_overlap 528616 ACAACGCAAATAAAA GATTATT TTGA AATAATC CTAGCGCGTGAAGAT TERM 672 528793 - 528782 - g 75 -5.8 -4.74453 | overlap 528786 GAAGACAGCCAAAAA GGCA TTGC TGCC GCCAAAGCAGCCAAT Spy49_0534 528272 - 528922 + | hypothetical protein TERM 673 529885 - 529871 - g 70 -2.8 -5.10029 | overlap 529883 AGCAACCTCAAAAAA CACCTT ATA AACGTG GAAAAATTACACCTA Spy49_0535 529618 - 530742 + | hypothetical protein TERM 674 531018 - 531000 - g 71 -6 -4.26079 | opp_overlap 530999 CTAAATGAGTTAAAA GGTAAGTA TGA TACTTTCC ATAATATGCAAGAAT TERM 675 531215 - 531196 - g 71 -7.2 -3.89524 | gap 1, overlap 531200 ATGCTATCTTAGAAA TCCATCCTG GTT CAGGA-GGA ACTGAAGCGCAAGAT prfB 530928 - 531908 + | Peptide chain release factor 2 TERM 676 532299 - 532281 - g 80 -4.4 -5.21709 | opp_overlap 532280 532281 CGCCACATTAAAAAA CGCGTGCC AGA GGTACTCG ATTTAGTTGGCTTGA ftsE 531927 - 532619 + | Cell division transporter, ATP-binding protein ftsE ftsX 532612 - 533541 + | Cell division protein ftsX TERM 677 533765 - 533721 - T 100 -14.6 -4.90381 | opp_overlap 533722 533724 533732, overlap 533722 TTCAAGAGAAGAAAA GCACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTGT CATTCAAAATTTAGT TERM 678 533722 - 533764 + T 100 -19.5 -2.74514 | opp_overlap 533722 533721, overlap 533724 533732 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGGTG TCATTCAAAATTTAG TERM 679 533764 - 533722 - T 100 -18.1 -3.53144 | opp_overlap 533722 533724 533732, overlap 533721 TCAAGAGAAGAAAAG CACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTG TCATTCAAAATTTAG TERM 680 533724 - 533762 + T 100 -16.3 -2.91467 | opp_overlap 533722 533721, overlap 533722 533732 AAGAGAAGAAAAGCA CCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGG TGTCATTCAAAATTT Spy49_0539c 534429 - 533851 - | oxyacylglutathione hydrolase Spy49_0540 534718 - 535482 + | Putative acetoin reductase TERM 681 535499 - 535521 + F 100 -15 -5.4111 | opp_overlap 535496 535495 535493 AATGATTAATACTGA CACTGTGAGT GAA ACTCACAGTG TTTTTTATACTTCTT TERM 682 536773 - 536759 - g 79 -4.9 -5.04868 | opp_overlap 536759, overlap 536762 CGAAATCAAACAAAA GCAGC GCTTT GCCGC TTATTTTGAGCAGCT TERM 683 537156 - 537141 - g 72 -4.7 -4.73614 | TACTATCAAAATAAA GAGCA CCAGCT TGCTC ATGATTGGTCTCGTA TERM 684 537644 - 537603 - g 85 -6.7 -5.09426 | gap 1, opp_overlap 537582 537601, overlap 537636 537637 TTTAATTCTAAAAAA CACTTGCTGTTGGTTTCAGA CTA TCT-AGACCAATGGCAAGTG CCTCACTTAGCGCAG dinG 535590 - 538091 + | DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG TERM 685 538078 - 538118 + F 100 -10.8 -4.74801 | opp_overlap 538076, overlap 538079 TAGTAGAAACGGACT GTTTTCTGATATAATGGA AAGGA TCTATTATATCAGAAAAA TTTTTAATGGCGTTA TERM 686 538079 - 538117 + F 100 -14.3 -3.44158 | opp_overlap 538076, overlap 538078 AGTAGAAACGGACTG TTTTCTGATATAATGGA AAGGA TCTATTATATCAGAAAA ATTTTTAATGGCGTT TERM 687 538383 - 538370 - f 79 -5.3 -5.20216 | opp_overlap 538370 TAGATTATGAAAAAA TGATC TGTT GATCA TTAATTAATCTGAAG aspC 538426 - 539619 + | Aspartate aminotransferase asnS 539640 - 540986 + | Asparaginyl-tRNA synthetase TERM 688 540999 - 541017 + F 73 -3.9 -5.1244 | opp_overlap 540990 540999, overlap 540990 TAATAATACAAAAAA GTTCATG TCATC TATGAAC TTTTTGTATTGGTAA TERM 689 541017 - 540999 - f 77 -3.2 -5.55695 | opp_overlap 540999 540990, overlap 540990 TAATAATACAAAAAA GTTCAT GTCATCT ATGAAC TTTTTGTATTGGTAA Spy49_0545 541401 - 542291 + | hypothetical protein Spy49_0546 542288 - 543265 + | hypothetical protein TERM 690 543786 - 543754 - g 84 -7.9 -4.68424 | CAACTCATGCAAAAA TTTATGCTAGATG CCAAAAC CATCGAGCATAAA AGCGGTGCAGTTACT Spy49_0547 543262 - 544173 + | hypothetical protein TERM 691 544184 - 544207 + F 100 -10.4 -5.71712 | overlap 544205 TATAGAACATTTTTA TCGTATGAGC CTTT GTTCATACGA TTTTTTTGTCTAAAA pepD 544306 - 545703 + | Probable dipeptidase A TERM 692 545716 - 545735 + F 100 -10 -5.05782 | opp_overlap 545716 TAAAAGTGAAGCTAA GGCTGAGC AACT GCTTAGCC TTTTTTACGATAACT adcA 545855 - 547402 + | Zinc-binding protein adcA precursor TERM 693 547417 - 547446 + F 90 -8 -5.38054 | opp_overlap 547417 ATCTTAACTCACTAA GCAAATCTTCTT TTAAGT AAGGAGGTTTGC TTTTTCTTTGTGGAG Spy49_0550 547552 - 548274 + | Transcriptional regulator, GntR family TERM 694 548402 - 548424 + G 79 -4.8 -5.00884 | opp_overlap 548406, overlap 548422 548423 ATGACGTTTTTTGAC GAAACAAGAG ATT CTCTGGATTC TTTTTTAAAGAGAGT agaS 548294 - 549493 + | Putative tagatose-6-phosphate aldose/ketose isomerase TERM 695 549553 - 549571 + T 95 -8.8 -5.53436 | opp_overlap 549553 AGGCCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT TERM 696 549571 - 549553 - T 100 -11 -5.46706 | opp_overlap 549553 AGGCCAAAAGAAAAA CCCTCCTG ATA CAGGAAGG TTTTTTGTATTGTCT rpmE 549850 - 549590 - | LSU ribosomal protein L31p Spy49_0554c 550906 - 549965 - | hypothetical protein TERM 697 550530 - 550542 + g 74 -9.1 -3.49653 | GCAATGATTTCACTT GCGCT AGA AGCGC TTGTGTCCACATAAT flaV 551300 - 551749 + | Flavodoxin TERM 698 551766 - 551785 + F 83 -6.4 -4.92239 | ACTATTTAGTAAAAA TGTCAGGG ACTT CCTTGGCA TTTTTAGATTTTTAA Spy49_0556 551925 - 552209 + | Chorismate mutase Spy49_0557 552202 - 553464 + | Putative transmembrane protein rplS 553579 - 553926 + | LSU ribosomal protein L19p TERM 699 553977 - 553949 - f 100 -14.9 -3.73873 | opp_overlap 553949 553955, overlap 553955 CGAAACGTAATAGAA TAAAAAGACTAGA GTC TCTAGTCTTTTTA TGTCGTCGTGACAAT TERM 700 553949 - 553977 + F 95 -14.9 -2.82635 | opp_overlap 553949 553955, overlap 553955 CGAAACGTAATAGAA TAAAAAGACTAGA GTC TCTAGTCTTTTTA TGTCGTCGTGACAAT TERM 701 553955 - 553971 + F 100 -9.5 -5.01497 | opp_overlap 553955 553949, overlap 553949 GTAATAGAATAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 702 553971 - 553955 - f 100 -9.5 -5.29716 | opp_overlap 553949 553955, overlap 553949 GTAATAGAATAAAAA GACTAGA GTC TCTAGTC TTTTTATGTCGTCGT TERM 703 554256 - 554272 + F 87 -6.6 -5.49569 | opp_overlap 554256, overlap 554249 TATTGTCACTGAAAA GCCTTT ACATC AAAGGC TTTTTTGTATTACTC TERM 704 554272 - 554256 - f 75 -7.3 -4.18494 | opp_overlap 554249 554256 TATTGTCACTGAAAA GCCTTTA CAT CAAAGGC TTTTTTGTATTACTC TERM 705 554697 - 554714 + F 80 -7 -4.57353 | TGGCATTTTACTATT GACAGG AATTTC CCTGTC TTTTGTCTCCTAAAG Spy49_0559 554947 - 555516 + | Phosphoglycolate phosphatase TERM 706 556464 - 556454 - g 82 -4 -5.42605 | CTAAGAAAAATAAAA TTCT TAA AGAA AATGAGGACAATTTG gyrB 555517 - 557469 + | DNA gyrase subunit B TERM 707 557538 - 557526 - f 80 -6.3 -4.77157 | overlap 557516 CGAATTGACTAAAAA TCATG ATG CATGA TGCCAACAGCTTTGT TERM 708 557592 - 557624 + F 79 -10.1 -3.33171 | opp_overlap 557594 GGGACAGCGTTAATG CATAGGTATTGAG ACCGCCC CTTAATACCTATG TTAGTCCTTATTAAG ezrA 557837 - 559561 + | Septation ring formation regulator ezrA TERM 709 559589 - 559571 - T 77 -8.9 -3.63627 | opp_overlap 559571 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 710 559571 - 559589 + T 95 -8.9 -5.17507 | opp_overlap 559571 TTTTGATACTTGAAA GTCGTGA TATTC TCACGAC TTTTTATTAGCTTTT TERM 711 559714 - 559727 + T 79 -5.3 -5.03747 | opp_overlap 559709, overlap 559708 TTTCAAAAATCTTTT CCAAA AGGA TTTGG TTTTTTCAGGAGTTT Spy49_0562c 560151 - 559693 - | hypothetical protein eno 560384 - 561691 + | Enolase TERM 712 561817 - 561847 + T 93 -14.2 -2.95896 | opp_overlap 561823, overlap 561823 GCAAAAGTTAAAGAA TAGAAAGCTTGGGA AAA TCCCAAGCTTTTTG CTTTCTAAATAGTAA TERM 713 561841 - 561823 - T 100 -13.2 -4.40333 | opp_overlap 561823 561817 GTTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA TERM 714 561823 - 561841 + T 100 -13.2 -5.04601 | opp_overlap 561823, overlap 561817 GTTAAAGAATAGAAA GCTTGGGA AAA TCCCAAGC TTTTTGCTTTCTAAA TERM 715 561976 - 561986 + T 74 -6.8 -4.40572 | opp_overlap 561974 561976 TATATTTTAAATACA GGAC TAA GTCC TTTTATACCAATTGT TERM 716 562250 - 562290 + T 100 -12 -5.05505 | AAGGCAATGTCTAGA GGCAATCGTATGTGGCTT GGTTG AAGCTGTTTACGATTGCC TTTTTCGTTTCTCAT Spy49_0564c 562855 - 562280 - | Transposase TERM 717 562666 - 562686 + g 71 -6.1 -4.26076 | opp_overlap 562666 TGGCATAGTAGCGAA CCTCTTCTA TCA TCGGAGAGG TTTTCGTAACAGTAA TERM 718 562813 - 562794 - G 77 -10.8 -2.81133 | GATTGACGGATGATA GCTGACAA TGCT TTGTCAGC TAGCTCCAGTACAAA Spy49_0565c 563102 - 562941 - | Transposase Spy49_0566c 565005 - 563464 - | Transcriptional regulator, RofA family TERM 719 566602 - 566591 - g 70 -3 -5.08015 | AAGTTAAAAAACAAA TTGA AGAC TCAA TCAATGGTGATGCAT TERM 720 566873 - 566863 - g 85 -5.4 -5.30575 | opp_overlap 566863 GAAAAAGCTAAAAAA TCAC TGG GTGA TTTAAGCGATAAAGT TERM 721 567058 - 567034 - g 74 -5.1 -4.6856 | GAAACAGTGGAAAAA GCTTCTTCTAA AAA TCAGAAAAAAC CAGAATCTTTTGAAG TERM 722 567484 - 567464 - g 72 -4.6 -4.74787 | overlap 567466 ATAAAGACAAACAAA CAGCAGCG GTTGA CGCAGCTA AGAATACAGCAATTG Spy49_0567 565552 - 568944 + | Putative extracellular matrix binding protein TERM 723 569012 - 568987 - f 100 -14.9 -3.59738 | opp_overlap 568987 TACTATATTTTCAAA CCAAGGTGATT TTGA AATCACCTTGG TTTTTTGGATCGTAA TERM 724 568987 - 569012 + F 100 -14.9 -5.1101 | opp_overlap 568987 TACTATATTTTCAAA CCAAGGTGATT TTGA AATCACCTTGG TTTTTTGGATCGTAA TERM 725 569579 - 569591 + F 93 -3.5 -6.04378 | CAATTGTTTCTATAT TAATA AAT TATTA TTTTTTTTGTCATTT sagA 569809 - 569970 + | Streptolysin S associated protein (SagA) TERM 726 570116 - 570162 + F 83 -9.7 -3.74693 | gap 1, opp_overlap 570125, overlap 570117 570119 570121 570125 TCTTGATGCTAACGT C-TCAGGTAATTAGCAGGTACT AGAC AGTACCTGCTAATTACTATATG TTTAGTAAAATGAGA TERM 727 570117 - 570160 + F 95 -13.4 -3.4582 | opp_overlap 570125, overlap 570116 570119 570121 570125 CTTGATGCTAACGTC TCAGGTAATTAGCAGGTACT AGAC AGTACCTGCTAATTACTATA TGTTTAGTAAAATGA TERM 728 570119 - 570158 + F 100 -16 -3.29972 | opp_overlap 570125, overlap 570117 570116 570121 570125 TGATGCTAACGTCTC AGGTAATTAGCAGGTACT AGAC AGTACCTGCTAATTACTA TATGTTTAGTAAAAT TERM 729 570121 - 570156 + F 100 -20.8 -3.21269 | opp_overlap 570125, overlap 570119 570117 570116 570125 ATGCTAACGTCTCAG GTAATTAGCAGGTACT AGAC AGTACCTGCTAATTAC TATATGTTTAGTAAA TERM 730 570125 - 570152 + F 100 -15.8 -3.40082 | opp_overlap 570125, overlap 570121 570119 570117 570116 TAACGTCTCAGGTAA TTAGCAGGTACT AGAC AGTACCTGCTAA TTACTATATGTTTAG TERM 731 570152 - 570125 - f 100 -15.8 -3.06133 | opp_overlap 570121 570119 570117 570116 570125 TAACGTCTCAGGTAA TTAGCAGGTACT AGAC AGTACCTGCTAA TTACTATATGTTTAG sagB 570192 - 571142 + | Streptolysin S biosynthesis protein B (SagB) sagC 571139 - 572197 + | Streptolysin S biosynthesis protein C (SagC) TERM 732 573203 - 573215 + GF 70 -4.1 -4.81851 | opp_overlap 573181 TGCAAATATTGAATG CGAAG AAC CTTTG TTTTTAGATTTAGAT TERM 733 573462 - 573477 + GF 71 -7.6 -3.67558 | TGGTACGTCACGCGA GTTCTG ATGC CAGAAC TTCTTGAAATGTGTA sagD 572217 - 573575 + | Streptolysin S biosynthesis protein D (SagD) TERM 734 574055 - 574066 + GF 73 -2.2 -5.31877 | TAAATCACTTATTGA TGGG GAAA TCCA TTTTTTATGCTAAGT sagE 573550 - 574221 + | Streptolysin S self-immunity protein (SagE) sagF 574218 - 574901 + | Streptolysin S biosynthesis protein (SagF) TERM 735 575287 - 575263 - g 86 -7.3 -5.0538 | opp_overlap 575267 GCTCAGCTTAAAAAA CAAGTTCTAAA AAG TTTAGAATTTG TGGGGCTACACTCCC sagG 574924 - 575847 + | Streptolysin S export ATP-binding protein (SagG) sagH 575856 - 576983 + | Streptolysin S export transmembrane protein (SagH) sagI 576980 - 578098 + | Streptolysin S export transmembrane protein (SagI) TERM 736 578091 - 578104 + F 71 -5.3 -4.63932 | TATTAAAACCTACCA GACTA TAAT TAGTC TTTTGTTAAAAAATA TERM 737 578144 - 578182 + F 100 -9.1 -5.00412 | opp_overlap 578137, overlap 578132 TTAGCTAACTACCAG GTAGCCCTTTTATTG GCTTATATG CAATAAAAGGGTTGC TTTTTGCTTATATTT TERM 738 578389 - 578379 - f 79 -4 -5.52986 | opp_overlap 578379 ATGTTATTAAAAAAA GTTT TGA AAAC GTATTTATTTTATGA TERM 739 579892 - 579929 + G 77 -9.9 -3.44848 | overlap 579889 AGGGAAAGACCGTAT CGCGCCAGCCAATATTA TTGA TAATGATGGCTTGCGTG TGTTTGATCCAGAAG TERM 740 580312 - 580291 - g 74 -3.7 -5.05153 | ACCTGAAAAAACAAA CTTGCAAAA AGAC CTTAGCAAG TTAAGCATTGCTTCT TERM 741 580882 - 580902 + G 70 -9.7 -2.66316 | opp_overlap 580887, overlap 580879 580887 CACTTTTAAATCTGA GCAAAGACG TCA CGTCTTGGC TAATATGCTAGCACA Spy49_0578 578669 - 581401 + | Endonuclease/Exonuclease/phosphatase family protein Spy49_0579 581679 - 582179 + | hypothetical protein TERM 742 582199 - 582220 + F 82 -4.3 -5.57729 | opp_overlap 582199, overlap 582204 GCATCATACTCAAAA GAGTTGGGT CAAT ACCCTTCTC TTTTTTATGTTGTTT lig 582373 - 584331 + | DNA ligase Spy49_0581 584345 - 585367 + | Putative transcriptional regulator TERM 743 585545 - 585560 + F 74 -5.4 -4.67556 | AATGCCATGTTTTAG GGGTGT TATT ATACCC TTTTTGGAATCTTGT Spy49_0582 585762 - 585959 + | ATP synthase C chain TERM 744 586330 - 586340 + G 73 -6.8 -4.21098 | opp_overlap 586330, overlap 586323 TGGACCTCGCCAACA GCCA ATC TGGC TTTTGACCTTGCTCT Spy49_0583 585994 - 586710 + | ATP synthase A chain Spy49_0584 586728 - 587222 + | ATP synthase B chain Spy49_0585 587222 - 587758 + | ATP synthase delta chain Spy49_0586 587774 - 589282 + | ATP synthase alpha chain TERM 745 589769 - 589793 + G 72 -4.4 -4.77759 | gap 1, opp_overlap 589769 589770 CAAATCATTTCACAA TC-CGTTGACA TGTT TGTCAATGAGA TTTTTGATGAGTTAT Spy49_0587 589298 - 590173 + | ATP synthase gamma chain TERM 746 591147 - 591165 + G 72 -10.4 -2.52834 | overlap 591146 CCGTATGCCTTCTGC TGTTGGTT ACC AACCAACA CTTGCTACTGAAATG Spy49_0588 590335 - 591741 + | ATP synthase beta chain Spy49_0589 591754 - 592170 + | ATP synthase epsilon chain Spy49_0590 592436 - 592693 + | hypothetical protein murA 592758 - 594029 + | UDP-N-acetylglucosamine 1- carboxyvinyltransferase Spy49_0592 594033 - 594221 + | hypothetical protein TERM 747 594232 - 594218 - f 82 -10 -3.62864 | opp_overlap 594218 TAAATTTACTGGAAA GTAGGC CTA GCCTAC TTTTTATAGCATCTG TERM 748 594218 - 594232 + F 100 -10 -4.8667 | opp_overlap 594218 TAAATTTACTGGAAA GTAGGC CTA GCCTAC TTTTTATAGCATCTG TERM 749 595007 - 595047 + F 100 -11.1 -5.14563 | AAAACGGATGGTACC GCGTGTCAACGCTCCGCTT ATC AAGTGGAGGAGTGGCACGC TTTTTTCATCGCCAA pheS 595077 - 596120 + | Phenylalanyl-tRNA synthetase alpha chain TERM 750 598206 - 598218 + G 74 -6.3 -4.41616 | overlap 598200 TTTACCATGCTAAGG GTATC TTG GATAC TTTATTTGCAAACCT pheT 596330 - 598735 + | Phenylalanyl-tRNA synthetase beta chain TERM 751 598762 - 598744 - f 91 -4.4 -5.80364 | opp_overlap 598744 598746 598748, overlap 598746 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 752 598744 - 598762 + F 95 -6.6 -5.84432 | opp_overlap 598744 598746, overlap 598746 598748 ACGCTAAGAAAAAAA CTGGGCCT CTA AGGCTCCG TTTTTTTCTGTTATA TERM 753 598802 - 598791 - f 79 -4.4 -5.27399 | TAATAGAGGAAAAAA GAAC TCCA GTTC AAATGATTGGAGAAA TERM 754 599022 - 599040 + G 85 -8.9 -4.19624 | TACCATCGTCAATTT CAGCAAG ACACA CTTGCTG TTTCTGTTGAGGCTA Spy49_0598 598845 - 599222 + | hypothetical protein Spy49_0599 599215 - 599601 + | hypothetical protein Spy49_0600 599674 - 600750 + | hypothetical protein TERM 755 601350 - 601335 - g 72 -3.2 -5.01858 | overlap 601337 TAAAGAAAAAAACAA GGCCAT TATT ATGGTC ACTCATGATGATCGG Spy49_0601 600760 - 601428 + | ABC transporter ATP-binding protein TERM 756 601465 - 601489 + T 85 -4.3 -5.65177 | opp_overlap 601465 TATTAGAAGAAAAAA CCAAACAAG CACAGCA CTTGTCTGG TTTTTTTCTAAGTGT TERM 757 601489 - 601465 - T 93 -7.9 -5.58179 | opp_overlap 601465 TATTAGAAGAAAAAA CCAAACAAGCA CAG CACTTGTCTGG TTTTTTTCTAAGTGT Spy49_0602c 602449 - 601532 - | hypothetical protein TERM 758 602734 - 602707 - gH 77 -8.6 -3.55071 | opp_overlap 602706 CTATATTGCTCCAAA TTCTCTTTCATT TGAA AAGGAAAGAGAA GTCTTAACCTTATTG TERM 759 603152 - 603180 + GH 80 -6.1 -4.7657 | opp_overlap 603149 603152 603155 CTTTTAAATAACCAA CTATCAAAAACAG TTG TTGTTATTGATGG TTTTTCACGTTTTTC rexB 602600 - 605815 + | Putative ATP-dependent exonuclease, subunit B TERM 760 607278 - 607288 + GF 81 -6.8 -4.77157 | AGAGGTGTTAAATGT CAGC AAT GCTG TTTTTAGTCACTTAA TERM 761 607933 - 607913 - gf 78 -7.6 -4.15543 | gap 1, overlap 607914 TAAAGACGTTGAAAA GCT-GGCGT CGAT ACGCCAAGC TAGGGTCGTTGTATG rexA 605776 - 609444 + | Putative ATP-dependent exonuclease, subunit A Spy49_0605 609584 - 610204 + | Putative ABC transporter TERM 762 610193 - 610179 - f 78 -7.8 -4.2349 | opp_overlap 610179 CGGTTACACTTAAAA GCAACC GTA GGCTGC TGGTCTTTTAGCCCA rpsU 610543 - 610719 + | SSU ribosomal protein S21p TERM 763 610756 - 610736 - T 93 -6.9 -5.75538 | opp_overlap 610736 GGTAAAAAATAAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 764 610736 - 610756 + T 100 -6.9 -5.8096 | opp_overlap 610736 GGTAAAAAATAAAAA CAGTTCTCA CAA TTAGAACTG TTTTTATTTTTTATC TERM 765 610830 - 610809 - T 88 -5.9 -5.58454 | opp_overlap 610809 610812, overlap 610788 TTGATATCAAAAAAA GCAGTTAGA CATG CCTAACTAC TTTATCAAAAATCGC mscL 611209 - 610847 - | Putative large conductance mechanosensitive channel TERM 766 610899 - 610912 + g 95 -4.5 -5.75538 | AATTCTTCTTGAGTA GGAGC TGCA GCTTC TTTTTCTTTTTTAGG dnaG 611339 - 613153 + | DNA primase rpoD 613162 - 614271 + | RNA polymerase sigma factor RpoD TERM 767 614264 - 614298 + F 89 -10.8 -3.53031 | opp_overlap 614265 614268 614274, overlap 614265 614267 614274 TAAGAGACTTTATAG AGGACTAAAATCGTCC AGT GGACGATTTTAGGTCG TTCCTTTGAAATAAG TERM 768 614297 - 614265 - f 84 -12.1 -2.91507 | opp_overlap 614264 614265 614267 614274, overlap 614268 614274 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 769 614265 - 614297 + F 93 -14.3 -2.71497 | opp_overlap 614265 614268 614274, overlap 614264 614267 614274 AAGAGACTTTATAGA GGACTAAAATCGTCC AGT GGACGATTTTAGGTC GTTCCTTTGAAATAA TERM 770 614267 - 614295 + F 87 -13.3 -2.89837 | opp_overlap 614265 614268 614274, overlap 614265 614264 614274 GAGACTTTATAGAGG ACTAAAATCGTCC AGT GGACGATTTTAGG TCGTTCCTTTGAAAT TERM 771 614294 - 614268 - f 100 -16.8 -2.69977 | opp_overlap 614267 614265 614264 614274, overlap 614265 614274 AGACTTTATAGAGGA CTAAAATCGTCC AGT GGACGATTTTAG GTCGTTCCTTTGAAA TERM 772 614288 - 614274 - f 100 -10 -4.34345 | opp_overlap 614274 614267 614265 614264, overlap 614268 614265 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 773 614274 - 614288 + F 93 -10 -4.24294 | opp_overlap 614268 614265 614274, overlap 614267 614265 614264 TATAGAGGACTAAAA TCGTCC AGT GGACGA TTTTAGGTCGTTCCT TERM 774 614431 - 614421 - f 79 -8.2 -3.95378 | opp_overlap 614420 TGATATCTTAAACAA GCCC AGA GGGC AATTCCTCTAAATAG TERM 775 614546 - 614571 + G 72 -8.5 -3.57883 | gap 1, opp_overlap 614554 CAAGATCAGGTGATA GCTATCAAGAAT AGA ATTCTTGA-AGC TTTAGAAACTGTTAT Spy49_0610 614507 - 614845 + | probably aromatic ring hydroxylating enzyme TERM 776 615475 - 615453 - g 73 -10 -2.91695 | overlap 615450 GGTATTTGGAAATTA TGGTAAAAAC TTT GTCTTTACCA TGGAGCAGTTAGCGG rmlD 614983 - 615837 + | dTDP-4-dehydrorhamnose reductase TERM 777 615873 - 615850 - f 100 -9.6 -4.64598 | opp_overlap 615850 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 778 615850 - 615873 + F 100 -11.8 -4.78764 | opp_overlap 615850 TAAGTATTCTAAAAA GAGTTGGCTT TCTA AGGCCAACTC TTTTTCATGGGTTTA TERM 779 616988 - 616964 - g 70 -3.5 -4.8622 | opp_overlap 616979 TGGTCCAAGCAAAAA GGGCAATTAGC AGA GCTGATTAACC AAGTTGATGCAGGTT rgpAc 615956 - 617110 + | Putative rhamnosyltransferase rgpBc 617100 - 618032 + | Rhamnosyltransferase rgpCc 618035 - 618838 + | Teichoic acid translocation permease protein tagG TERM 780 619627 - 619613 - g 70 -2.8 -5.055 | TGAATGCTGAAAAAA TATCTG TAT CTGATA TTGCCAAAGATTTGA rgpDc 618838 - 620058 + | Teichoic acid export ATP-binding protein tagH rgpEc 620069 - 621076 + | Putative glycosyltransferase TERM 781 622434 - 622424 - g 74 -4 -5.05153 | ATGTTAAAAAACAAA TTGA TTT TCAA GCTATGGATACATTT rgpFc 621073 - 622818 + | RgpFc protein TERM 782 622959 - 622971 + G 74 -4.9 -4.77775 | GTAAACTATTATACT CATTT ACT AAATG TTTCTTTTGTGGGAT Spy49_0619 622815 - 625289 + | hypothetical protein TERM 783 625942 - 625958 + G 76 -6.6 -4.33105 | opp_overlap 625941 CTAAGGTTAATTGAC CGTTCA TTGAT TGAACG TTTTGCTAATCATTA Spy49_0620 625468 - 626163 + | Putative glycosyl transferase Spy49_0621 626165 - 626506 + | hypothetical protein Spy49_0622 626499 - 627785 + | Heteropolysaccharide repeat unit export protein Spy49_0623 627766 - 629262 + | hypothetical protein TERM 784 629314 - 629276 - f 79 -10.6 -2.91467 | opp_overlap 629276 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT TERM 785 629276 - 629314 + F 100 -10.6 -4.5265 | opp_overlap 629276 AAACTCTTAATTAGA GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC TTTTATGCTATAATT pepT 629356 - 630579 + | Tripeptide aminopeptidase Spy49_0625 630620 - 631108 + | Putative pore-forming peptide TERM 786 631112 - 631091 - T 85 -6.6 -5.32882 | opp_overlap 631091 CAGCATGATAAAAAA GCCCTTAC TCGAGG GTAAGAGC TTTAGTTGGGCAAGA Spy49_0626c 631292 - 631095 - | Ferredoxin Spy49_0627 631341 - 631817 + | hypothetical protein TERM 787 631918 - 631886 - g 70 -9.3 -3.18433 | opp_overlap 631884 631887 631889, overlap 631884 631889 AGTGGAAAAAGTACA GTAGCCAAGATTATT GCA AAAAATCTTGGCTAT ACTTATCTAGATACT TERM 788 631887 - 631917 + G 83 -12.8 -2.89793 | opp_overlap 631886 631884 631889, overlap 631884 631889 GTGGAAAAAGTACAG TAGCCAAGATTATT GCA AAAAATCTTGGCTA TACTTATCTAGATAC TERM 789 631915 - 631889 - g 77 -11 -2.78025 | opp_overlap 631887 631884 631889, overlap 631886 631884 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT TERM 790 631889 - 631915 + G 78 -11 -2.99717 | opp_overlap 631889 631886 631884, overlap 631887 631884 GGAAAAAGTACAGTA GCCAAGATTATT GCA AAAAATCTTGGC TATACTTATCTAGAT cmk 631832 - 632512 + | Cytidylate kinase TERM 791 632622 - 632645 + F 100 -13.2 -4.40526 | overlap 632585 632581 TGGAATATTATATGT GCGGGCTTGA TTTA TCAAGTCCGC TTTCGTTTTTCTCTA infC 632674 - 633204 + | Translation initiation factor 3 rpmI 633246 - 633443 + | LSU ribosomal protein L35p rplT 633502 - 633861 + | LSU ribosomal protein L20p TERM 792 633927 - 633945 + T 85 -6.7 -5.22006 | opp_overlap 633927 633930 633932 633935, overlap 633933 633935 633942 AGAAACAAAAATGAA GGAGACG ATGGA CGTCTTC TTTTTATTATACTCA TERM 793 633935 - 633983 + T 73 -7 -3.93768 | opp_overlap 633930 633927 633935 633932, overlap 633927 633933 633942 AAATGAAGGAGACGA TGGACGTCTTCTTTTTATTATA CTCAA TATAATAAAAAGAAGTTTCCCA TGTTTTATTACCAGT TERM 794 633942 - 633976 + T 95 -13.3 -3.7229 | opp_overlap 633927 633935 633932, overlap 633927 633935 633933 GGAGACGATGGACGT CTTCTTTTTATTATA CTCAA TATAATAAAAAGAAG TTTCCCATGTTTTAT TERM 795 634131 - 634108 - T 100 -11.2 -5.45652 | opp_overlap 634111 ATCGCCAATAAAAAA GAAGCAAAAT TATT ATTTTGCTTC TAGTCAGATCATTAA Spy49_0632c 636362 - 634152 - | Phosphoglycerol transferase TERM 796 634310 - 634325 + g 71 -6.2 -4.23486 | overlap 634323 CTGATCCGAGTTTTG CTGAAA TATC TTTCAG TTGTTTTAACTGCTT TERM 797 636584 - 636568 - g 100 -5.1 -5.75822 | overlap 636569 TATAAAGGAAAAAAA TCAGTTG GTT CAACTGG TGACCAAGTCCAATC TERM 798 636583 - 636569 - g 79 -8.6 -4.03053 | overlap 636568 ATAAAGGAAAAAAAT CAGTTG GTT CAACTG GTGACCAAGTCCAAT Spy49_0633 636470 - 637633 + | hypothetical protein aroD 637630 - 638316 + | 3-dehydroquinate dehydratase TERM 799 639287 - 639276 - g 70 -5.8 -4.41348 | opp_overlap 639275 639276 TGGTCGTCAAACAAA CCAC TTAG GTGG CTTTGAAGGTGGCAT aroF 638410 - 639576 + | Chorismate synthase Spy49_0636 639637 - 639978 + | hypothetical protein TERM 800 640002 - 640029 + F 74 -3.5 -5.34055 | gap 1 AGATAGGAAAAAAAA CAGATTGCTGGC AGCTC GTCAG-GATCTG TTTTTTAGTGTTTAT TERM 801 640615 - 640629 + G 73 -5.7 -4.62302 | ATATTTTGATTGCCA CAGGA GGACA TCCTG TTTTTCCAGATATTG gor 640200 - 641552 + | Glutathione reductase TERM 802 641579 - 641624 + T 83 -4.9 -5.4833 | gap 1, opp_overlap 641580, overlap 641580 TAAGGCAATAAAAAA TGATGTTAACAGTTTTTGAGGA AAG TCTTCTA-AACTGCTAGCATCG TTTTTTGTTAGGTGA folC.2 642908 - 641640 - | Dihydrofolate synthase / Folylpolyglutamate synthase Spy49_0639c 643378 - 642938 - | hypothetical protein TERM 803 643332 - 643348 + g 70 -2.9 -5.06414 | overlap 643320 TGCTCGGTAGGGACA CCTCCTG ATT TACGAGG TTTTTGTTGACGGGA TERM 804 643732 - 643742 + G 71 -6.8 -4.11484 | opp_overlap 643732 CCAATTAGGGACAAA TGCG TCT CGCA TTTTAGAAGCTTCCC TERM 805 644077 - 644064 - g 71 -6.7 -4.07618 | CTGTTAATAATGAAA TGGGA GCTA TCCCA CCGATTAGAGCCATT nifS 643613 - 644755 + | Cysteine desulfurase thiI 644767 - 645981 + | Probable thiamine biosynthesis protein thiI TERM 806 646035 - 646048 + G 72 -3.1 -5.15634 | gap 1, opp_overlap 646035 646036, overlap 646037 TGATACTATTGAAAA GCCTCT ATA AG-GGC TTTTTTGCTGCAATG TERM 807 646239 - 646225 - g 95 -8.6 -5.40072 | overlap 646228 TGGGGTTCAAAAAAA TGAGCT AGC AGCTCA AAAATCTGCTCAGCC TERM 808 646796 - 646781 - g 71 -4 -4.94703 | overlap 646782 AAGATAAAAAAAGAA CTTCAG CTAG CTGAAA AAAAGGCTGACGTGA Spy49_0642 646019 - 647287 + | hypothetical protein TERM 809 647427 - 647413 - f 79 -8.6 -3.74747 | GTAACGTTGACTAAA TGCACA TCC TGTGCA ACCGCGCGAAAATCG rplU 647526 - 647840 + | LSU ribosomal protein L21p Spy49_0644 647852 - 648178 + | hypothetical protein rpmA 648206 - 648499 + | 50S ribosomal protein L27 TERM 810 648521 - 648548 + F 100 -8.4 -6.11229 | opp_overlap 648523, overlap 648522 648523 AATATCGCATTATAT AAGGCTTTCCAG GTGT CTGGAAAGCCGA TTTTTTTATTTTGCT TERM 811 648522 - 648547 + F 100 -11.9 -4.23077 | opp_overlap 648523, overlap 648521 648523 ATATCGCATTATATA AGGCTTTCCAG GTGT CTGGAAAGCCG ATTTTTTTATTTTGC TERM 812 648523 - 648546 + F 100 -15.4 -3.11406 | opp_overlap 648523, overlap 648522 648521 TATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 813 648546 - 648523 - f 100 -15.4 -3.54951 | opp_overlap 648523 648522 648521 TATCGCATTATATAA GGCTTTCCAG GTGT CTGGAAAGCC GATTTTTTTATTTTG TERM 814 649019 - 649033 + G 78 -4.2 -5.24129 | opp_overlap 649012 649010, overlap 649012 CAGGAACAGTCTTGA CAAGTC AAG GACTAG TTTTTTATGAGAAAG Spy49_0646 648847 - 649761 + | Putative capsular polysaccharide biosynthesis regulatory protein TERM 815 649928 - 649943 + G 70 -5.4 -4.35483 | overlap 649923 649921 CTTTTCCATATTGCA GGACCA GCAA TGGTTC TTTGTTGTCATAACG lsp 649758 - 650216 + | Putative prolipoprotein signal peptidase Spy49_0648 650206 - 651096 + | Putative ribosomal large subunit pseudouridine synthase TERM 816 651436 - 651459 + F 90 -8.2 -5.34381 | overlap 651438 TGCTATATTTTGCTG AATCTCCTTG TTTC CAAGGAGATC TTTTTATTTGAATTT TERM 817 651438 - 651457 + F 100 -10.8 -4.2793 | overlap 651436 CTATATTTTGCTGAA TCTCCTTG TTTC CAAGGAGA TCTTTTTATTTGAAT TERM 818 651746 - 651710 - g 100 -16.8 -2.87881 | opp_overlap 651704 651718 651720, overlap 651715 651729 CAAGCCTTTTAGAGA TGACATGAGAGTTGAG GAAGA CACAACTCTCATGTCA GTAGATATTACAGGC TERM 819 651741 - 651715 - g 71 -9.5 -2.88999 | opp_overlap 651704 651718 651720, overlap 651710 651729 CTTTTAGAGATGACA TGAGAGTTGAG GAAGA CACAACTCTCA TGTCAGTAGATATTA pyrR 651492 - 652013 + | Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR pyrP 652029 - 653288 + | Putative uracil permease pyrB 653349 - 654284 + | Aspartate carbamoyltransferase TERM 820 655130 - 655118 - g 77 -7.7 -4.14472 | opp_overlap 655127 CCAAGACTTGTAAAA TGACC TTT GGTCA TCGTGGCTTTAACCA carA 654328 - 655410 + | Carbamoyl-phosphate synthase small chain TERM 821 655693 - 655707 + G 73 -7.8 -3.9461 | AAAAAATCATGGTTA TCGGGT CTG GCCCGA TTATTATTGGACAAG carB 655656 - 658832 + | Carbamoyl-phosphate synthase large chain TERM 822 658845 - 658871 + F 83 -4.7 -5.55698 | gap 1, opp_overlap 658845 658848 658860 658862, overlap 658848 TAAAAATTAAAAAAA TCA-TTTTTAAG AAAA CTTAAAAAATGA TTTTTTTAGATTATA TERM 823 658871 - 658845 - f 91 -4.7 -5.85011 | gap 1, opp_overlap 658845 658848, overlap 658848 658860 658862 TAAAAATTAAAAAAA TCA-TTTTTAAG AAAA CTTAAAAAATGA TTTTTTTAGATTATA TERM 824 659592 - 659571 - g 72 -9.5 -2.974 | overlap 659568 GCAAGATTTAAATGA TGCTTATGC AGAT GCACAAGCA GAAGTAAATAAAGCG Spy49_0655 659041 - 660312 + | hypothetical protein Spy49_0656 660312 - 661022 + | Putative ABC transporter Spy49_0657 661034 - 662254 + | Permease, putative TERM 825 662434 - 662465 + F 86 -11 -3.29511 | overlap 662435 AGTGATACATCTCTT ATTTCTAGCTGAAC TTCG GTTCGGCTAGAAAG TTGTCAGGCAATGAG TERM 826 662435 - 662464 + F 95 -14.5 -2.57564 | overlap 662434 GTGATACATCTCTTA TTTCTAGCTGAAC TTCG GTTCGGCTAGAAA GTTGTCAGGCAATGA Spy49_0658 662508 - 664241 + | Glycerophosphoryl diester phosphodiesterase TERM 827 664289 - 664243 - f 100 -17 -3.73224 | opp_overlap 664232 664244 664251 664255, overlap 664244 664255 GTAGTCTTTATTAAA GGTTTAAAGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAACT GAGTTATACTGTTTA TERM 828 664288 - 664244 - f 100 -20.5 -2.8372 | opp_overlap 664244 664251 664255, overlap 664243 664255 TAGTCTTTATTAAAG GTTTAAAGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 829 664244 - 664288 + F 100 -20.5 -2.63636 | opp_overlap 664244 664243 664255, overlap 664251 664255 TAGTCTTTATTAAAG GTTTAAAGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT TERM 830 664251 - 664281 + F 95 -12.8 -3.62418 | opp_overlap 664244 664243 664255, overlap 664244 664255 TATTAAAGGTTTAAA GAAAGTGTCAAG AAAAAAA CTTGACACTTTC TTTAAACTGAGTTAT TERM 831 664277 - 664255 - f 81 -7.8 -4.4448 | opp_overlap 664251 664244 664255, overlap 664244 664243 AAAGGTTTAAAGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG TERM 832 664255 - 664277 + F 81 -7.8 -4.44046 | opp_overlap 664255 664244 664243, overlap 664251 664244 AAAGGTTTAAAGAAA GTGTCAAG AAAAAAA CTTGACAC TTTCTTTAAACTGAG rpsP 664368 - 664640 + | SSU ribosomal protein S16p Spy49_0660 664650 - 664889 + | KH domain protein TERM 833 664915 - 664939 + F 100 -15.9 -4.65895 | opp_overlap 664915 664935 664938, overlap 664938 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAAA TERM 834 664939 - 664915 - f 100 -15.9 -4.20531 | opp_overlap 664915 664938, overlap 664935 664938 GAGATGGATTGAAAA GCTTGTTGACT TAA AGTCAACAAGC TTTTTGAATAGCAAA TERM 835 665205 - 665240 + F 100 -18 -4.40333 | opp_overlap 665216, overlap 665195 CAGTTTTTTGGGGGA CATTCCTAAAATTAAG TATA CTTAATTTTAGGAATG TTTATATTCTTTACA TERM 836 665374 - 665364 - f 73 -4 -5.20216 | opp_overlap 665364 TATACGATCAAAAAA GTTA GAG TAAC TTTATAAAACAGTGG TERM 837 665481 - 665439 - f 80 -5 -5.28778 | opp_overlap 665470, overlap 665470 ATTATCTATAAAAAA TCCCAAAAGTAGTTTGTT TCCAGTT AATGAACTTCTTTTGGGA AGGCTTTTTTGCTGA Spy49_0661 665821 - 668847 + | Cell wall surface anchor family protein Spy49_0662 668867 - 669268 + | hypothetical protein TERM 838 669370 - 669316 - T 100 -12.4 -5.12707 | opp_overlap 669319 669367, overlap 669306 669307 669317 669319 TTAAACGCTAAAAAA CGAGCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGCTTA TTAGGTGCTCTTAAT TERM 839 669369 - 669317 - T 100 -13.7 -3.6654 | opp_overlap 669319 669367, overlap 669307 669316 669319 TAAACGCTAAAAAAC GAGCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGCTT ATTAGGTGCTCTTAA TERM 840 669367 - 669319 - T 100 -16.3 -3.39328 | opp_overlap 669319, overlap 669307 669317 669316 AACGCTAAAAAACGA GCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGC TTATTAGGTGCTCTT TERM 841 669319 - 669367 + T 100 -22.9 -3.70511 | opp_overlap 669307 669319 669317 669316 AACGCTAAAAAACGA GCATACTCTTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGC TTATTAGGTGCTCTT czcD 670323 - 669448 - | Putative cation-efflux system membrane protein Spy49_0664 670459 - 670980 + | hypothetical protein TERM 842 671393 - 671377 - g 84 -2.3 -5.75822 | opp_overlap 671378, overlap 671369 671378 TAGAAAGCAAAAAAA CTTTGAT ATC ATCAAAT TTAAAGACATGTATC rimM 671195 - 671713 + | 16S rRNA processing protein RimM TERM 843 671853 - 671832 - g 91 -9.5 -4.60487 | GATTATGCTGAAAAA GCTCGTCAT GTGG ATGACGAAC CCTATGGTGGGGGCC TERM 844 671991 - 672012 + G 93 -6.7 -5.40464 | opp_overlap 671991, overlap 671982 GCTTATGCTGAAGAA TTAGCTCTT GAGG AAGAGTTAA TTTTTATTTGTGGTC trmD 671700 - 672434 + | tRNA (guanine-N1)-methyltransferase TERM 845 672705 - 672729 + G 72 -4.3 -4.74103 | opp_overlap 672704 672702 672708, overlap 672706 672708 TAAAAGAAGAAGTAT TAACCTTTGAC AAG GTTAAAGGTGG TTTTTCGATTAGGAC Spy49_0668 672434 - 673426 + | Thioredoxin reductase TERM 846 674206 - 674228 + G 76 -9.2 -3.76641 | CTTATCATTGTTAGT CCGATTTCAA CTG TTGCAATCGG TTTAGCTATTGGGCT Spy49_0669 673603 - 674661 + | Probable regulatory protein apbA 674674 - 675597 + | 2-dehydropantoate 2-reductase TERM 847 675617 - 675648 + F 100 -9.6 -5.58179 | TATCAAATCGTTATA CTCAATATTATGGC TAAA GCTTTAATATTGAG TTTTTTGTTATGCTG fruR 675853 - 676566 + | Putative transcriptional repressor fruK 676563 - 677474 + | Tagatose-6-phosphate kinase / 1- phosphofructokinase fruA 677471 - 679417 + | PTS system, fructose-specific IIABC component TERM 848 679446 - 679467 + F 90 -8.1 -5.23316 | opp_overlap 679446 TTTTTCTTACTAAAA CTAGAATCT GTCA AGGTTCTAG TTTTTTGCTATACTA Spy49_0675 679516 - 680109 + | Putative peptidoglycan hydrolase Spy49_0676 680261 - 680968 + | Putative peptidoglycan hydrolase TERM 849 681066 - 681034 - T 100 -19.5 -3.91911 | opp_overlap 681034, overlap 681059 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT TERM 850 681034 - 681066 + T 100 -19.5 -4.74084 | opp_overlap 681034 681059 TCTATTTTAAGTAAA GGATTTAGTTCTGTA TTG TACAGAACTAAATCC TTTTAGTTTTACTTT Spy49_0677c 681243 - 681025 - | Putative transposase, ISSmu1 TERM 851 681460 - 681422 - R 73 -4.6 -4.98522 | AATGCCAGACAAAAA CACCCCAATTATTAGA TTTTTTG TCTAACTTTTGGGGCG CAATTCAATCTGAGC TERM 852 681737 - 681755 + r 71 -3.2 -5.093 | overlap 681738 TAGTCAAATGAATTT CTTTTGAT CCC ATCAAAAA TTTTCTTATTTTAAA mac 682944 - 681925 - | Immunoglobulin G-endopeptidase (IdeS) / Mac TERM 853 682224 - 682252 + g 100 -6.1 -5.95539 | CTTCGGTTAACTCTT TCTTAATGAGATC ACT GATTTCTTTGAGA TTTTTTTCTTTAAAA TERM 854 683243 - 683224 - H 100 -6.4 -6.04953 | opp_overlap 683223 AGACAAATAAAAAAA GACCTCAT CCAG AAGAGGTC GTGGTATAACTGGGG TERM 855 683660 - 683671 + H 78 -2.2 -5.59357 | GGTGCAGTACAAGAC CACT AACG GGTG TTTTTTTGATATAAT Spy49_0680 683850 - 684230 + | hypothetical protein Spy49_0681 684230 - 685078 + | DegV family protein TERM 856 685181 - 685142 - f 90 -11.6 -3.54721 | opp_overlap 685147, overlap 685143 CAAAATGTGATAGAA CCCAAGTAGCCTAATC ACACTTTA GATTGGGCTACTTGGA TGATAGGTTAGAAAA TERM 857 685180 - 685143 - f 87 -12.9 -2.72109 | opp_overlap 685147, overlap 685142 AAAATGTGATAGAAC CCAAGTAGCCTAATC ACACTTTA GATTGGGCTACTTGG ATGATAGGTTAGAAA TERM 858 685147 - 685176 + F 71 -8.7 -3.10641 | opp_overlap 685143 685142 TGTGATAGAACCCAA GTAGCCTAATC ACACTTTA GATTGGGCTAC TTGGATGATAGGTTA TERM 859 685220 - 685241 + F 73 -8.1 -3.6106 | gap 1, opp_overlap 685220 685219 685216 685238, overlap 685220 GAAATTAATGACAAT G-CCTTCTGA GTT TCAGAAGGGC TTTACCCATATTGAC papS 685252 - 686412 + | tRNA nucleotidyltransferase Spy49_0683 686409 - 688286 + | Putative ABC transporter TERM 860 688350 - 688339 - f 74 -5.8 -4.46621 | overlap 688341 GATAATAGAAAAGAA GTGC TCTT GCAC TGAGCCCCAAAAGTT TERM 861 688381 - 688425 + F 77 -5.1 -5.13722 | opp_overlap 688387, overlap 688379 688382 688387 GGCTACTCTATTTGA AGTAAAGGATTTAGTTCTGTG TTG TAGAGGACTAAGTCCTTTTCG TTTTATTTTGATACG TERM 862 688382 - 688424 + F 77 -8.6 -3.67149 | opp_overlap 688387, overlap 688379 688381 688387 GCTACTCTATTTGAA GTAAAGGATTTAGTTCTGTG TTG TAGAGGACTAAGTCCTTTTC GTTTTATTTTGATAC TERM 863 688387 - 688419 + F 88 -7.1 -4.83677 | opp_overlap 688387, overlap 688379 688382 688381 TCTATTTGAAGTAAA GGATTTAGTTCTGTG TTG TAGAGGACTAAGTCC TTTTCGTTTTATTTT TERM 864 688531 - 688546 + F 77 -3.3 -5.55695 | AGAGCTCGTCTTTGT CCATT CTTTAT AATGG TTTTTTGTCTTCTTC TERM 865 688585 - 688598 + F 74 -2.3 -5.42259 | opp_overlap 688585 GATGCTTCTTTCAAA CGGAG TTCC CTCGG TTTTTTTAGCGCTAA TERM 866 688650 - 688695 + F 100 -16.4 -3.80625 | opp_overlap 688653, overlap 688653 688655 CTTAATGTCATACAA AAACACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTGTAG TTTACATTATGGGCG TERM 867 688653 - 688692 + F 100 -22.5 -2.98778 | opp_overlap 688653, overlap 688650 688655 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 868 688692 - 688653 - f 100 -22.5 -4.98522 | opp_overlap 688653 688650 688655 AATGTCATACAAAAA CACCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGGTG TAGTTTACATTATGG TERM 869 688655 - 688690 + F 100 -19.3 -3.04183 | opp_overlap 688653, overlap 688653 688650 TGTCATACAAAAACA CCCCAAACGTTAGAT TTTTTT ATCTAACGTTTGGGG TGTAGTTTACATTAT Spy49_0684 689180 - 689590 + | Peptide deformylase TERM 870 689610 - 689596 - T 70 -4.2 -4.72029 | opp_overlap 689598, overlap 689598 TTTAATTTAACAAAA GACCTA GAG TAGGAC GCTTTAGGTTTTTTT TERM 871 689598 - 689618 + T 79 -4 -5.40072 | opp_overlap 689598 689596 TAATTTAACAAAAGA CCTAGAGT AGGAC GCTTTAGG TTTTTTTGGCAAAGA Spy49_0686c 691684 - 689672 - | 5-nucleotidase TERM 872 690148 - 690134 - G 71 -5 -4.59944 | opp_overlap 690138, overlap 690135 690136 ACCACCATAAAGAAA GTCGTT GAC AACAAC GGTGTAAGTAGTTGT Spy49_0687 691904 - 692554 + | GTP pyrophosphokinase TERM 873 692614 - 692584 - g 85 -11.2 -3.37245 | opp_overlap 692612 TTAGCTGAAGACGAA TGGCAGATGTCTAA TGT TTTGACAACTGCCA TGACTCATCAAGGTT Spy49_0688 692557 - 693225 + | DNA-binding response regulator TERM 874 693397 - 693387 - g 70 -5.4 -4.41616 | ATTTCCTCAAATAAA GGTA AAT TACC TGGCACTACGGAAAG Spy49_0689 693234 - 694466 + | Putative two-component sensor histidine kinase TERM 875 694533 - 694549 + F 100 -9.4 -4.71482 | opp_overlap 694536 ATAAACGATGCTTAA CCAGCC CATGA GGCTGG TTTTTAACGTTTAAT mvaK1 694760 - 695638 + | Mevalonate kinase mvaD 695620 - 696564 + | Diphosphomevalonate decarboxylase mvaK2 696557 - 697570 + | Phosphomevalonate kinase Spy49_0693 697557 - 698546 + | Isopentenyl-diphosphate delta-isomerase, FMN- dependent TERM 876 698756 - 698713 - T 100 -11.3 -4.63044 | gap 1, opp_overlap 698720, overlap 698720 ATGTATAGAAACAAA GATTAAACACCCATGTAAAC CAATT GTTTACATGGGTGTTTG-CC TTATATTAGTTGTTT TERM 877 698750 - 698720 - T 100 -17.1 -4.10269 | opp_overlap 698720, overlap 698713 GAAACAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG TERM 878 698720 - 698750 + T 100 -17.1 -3.85509 | opp_overlap 698720 698713 GAAACAAAGATTAAA CACCCATGTAAAC CAATT GTTTACATGGGTG TTTGCCTTATATTAG mvaS1 700053 - 698776 - | Hydroxymethylglutaryl-CoA reductase TERM 879 699298 - 699323 + g 90 -8.3 -5.05782 | overlap 699300 CCGGTAAGGATCTAC TTGAGCTAGTC GGCT GGCTAGCTCTA TTTTTTGAGCTAACT TERM 880 699300 - 699321 + g 90 -10.9 -4.15748 | overlap 699298 GGTAAGGATCTACTT GAGCTAGTC GGCT GGCTAGCTC TATTTTTTGAGCTAA TERM 881 699626 - 699640 + g 85 -2.8 -5.86976 | overlap 699624 GGATAAGCTTTATTT GCCAAT GCA ATTAGC TTTTTTGTTTTATGA TERM 882 699998 - 700010 + g 71 -4.1 -4.86731 | TCGATAAGTTGGAGG CGTTC TTC GAATG TTTTCTTTGAAAAAC mvaS2 701215 - 700040 - | Hydroxymethylglutaryl-CoA synthase TERM 883 700410 - 700438 + g 88 -8.3 -4.74453 | opp_overlap 700411 700414, overlap 700411 700414 ATTTGTTTGCTATAA GTAATAGAAGCTT GAA AGGCTTCTATTAG TTTTTCCCTGTGTTC TERM 884 700437 - 700411 - G 70 -9.6 -2.57132 | opp_overlap 700410 700411 700414, overlap 700414 TTTGTTTGCTATAAG TAATAGAAGCTT GAA AGGCTTCTATTA GTTTTTCCCTGTGTT TERM 885 700411 - 700437 + g 86 -11.8 -3.43587 | opp_overlap 700411 700414, overlap 700410 700414 TTTGTTTGCTATAAG TAATAGAAGCTT GAA AGGCTTCTATTA GTTTTTCCCTGTGTT TERM 886 700414 - 700434 + g 79 -9.1 -3.83644 | opp_overlap 700414 700411, overlap 700411 700410 GTTTGCTATAAGTAA TAGAAGCTT GAA AGGCTTCTA TTAGTTTTTCCCTGT thyA 701424 - 702263 + | Thymidylate synthase dyr 702343 - 702840 + | Dihydrofolate reductase Spy49_0698 702860 - 703060 + | hypothetical protein TERM 887 703515 - 703493 - g 70 -5.7 -4.42386 | gap 1, opp_overlap 703478 TGTGGATTTACAAAA GTCCAA-CAT TTTG ATGATTGGAC CAACAGGTTCAGGAA TERM 888 703847 - 703819 - g 70 -9 -3.1706 | gap 2 AAGGTACGGTAGCAA GTG-TTCC-CCCAC AAG GTGGGCGGAAGCAC CCTAATCAAGAAATG clpX 703161 - 704390 + | ATP-dependent Clp protease ATP-binding subunit clpX engB 704400 - 704999 + | GTP-binding protein EngB TERM 889 705029 - 705046 + F 76 -4.1 -5.18726 | TTATCTATGCTAAAA CATTCTC AGTA GAGGGTG TTTTTCTTATCGAAA Spy49_0702 705147 - 705890 + | hypothetical protein TERM 890 705875 - 705907 + T 74 -3.3 -5.36314 | opp_overlap 705875 AGCGCTAAAAAAAAG TCCGTCAAGTGTATA ACG TAGTCACAAGACGGA TTTTTTCATGTTTTG clpL 708047 - 705948 - | Putative ATP-dependent Clp proteinase TERM 891 705984 - 706001 + g 75 -2.7 -5.1925 | overlap 705978 705985 CACTAGTTGTCCTTC TTTTAGG ATTG CCTGAAG TTTTTTGACTTCTGG TERM 892 708758 - 708741 - g 74 -4.2 -5.17576 | TACTAATGGAAAAAA TTGTTG CAACAC CAACAA AAGAATACATCTGGG rpiA 708425 - 709108 + | Ribose 5-phosphate isomerase A deoB 709185 - 710396 + | Phosphopentomutase arsC 710415 - 710855 + | Arsenate reductase punA 710839 - 711648 + | Purine nucleoside phosphorylase deoD2 712176 - 712946 + | Purine nucleoside phosphorylase TERM 893 712983 - 712955 - g 71 -6.8 -4.09805 | gap 1, opp_overlap 712956 712958, overlap 712956 TGACTAATAATCAAA CGC-TAGACATCC TTTT GGATGTCTATGCT TATAATCACGCCTTT TERM 894 712956 - 712982 + G 77 -10.3 -3.40899 | gap 1, opp_overlap 712955 712956, overlap 712958 GACTAATAATCAAAC GC-TAGACATCC TTTT GGATGTCTATGC TTATAATCACGCCTT TERM 895 712982 - 712956 - g 75 -10.3 -3.0516 | gap 1, opp_overlap 712956 712958, overlap 712955 GACTAATAATCAAAC GC-TAGACATCC TTTT GGATGTCTATGC TTATAATCACGCCTT TERM 896 712958 - 712979 + G 81 -11.7 -2.86271 | opp_overlap 712956 712955, overlap 712956 CTAATAATCAAACGC TAGACATCC TTTT GGATGTCTA TGCTTATAATCACGC Spy49_0709 712939 - 713727 + | Histidine protein kinase cpsY 714712 - 713807 - | Putative transcriptional regulator Spy49_0711 714934 - 715470 + | hypothetical protein TERM 897 715676 - 715699 + F 100 -12.4 -4.81685 | overlap 715673 TTTTAGTTTGCTGTA GCCTCGCTTC TTTG GTAGCGAGGC TTTTTGGTGCTTAAT TERM 898 715770 - 715806 + G 93 -9.6 -4.7153 | opp_overlap 715799, overlap 715797 AGAACGCCCAATTAT TGCTTTAGACTTTTCA TCATT TGAGGAGACTAAAGCA TTTTTAGACTTATTT pyrF 715747 - 716439 + | Orotidine 5-phosphate decarboxylase pyrE 716497 - 717126 + | Orotate phosphoribosyltransferase amiC 717323 - 718777 + | Putative amidase TERM 899 719025 - 719003 - g 75 -2.7 -5.34309 | gap 1 ACTATCAAAGAAAAA GGGGT-GTTA AAAG TAGCTACCCC AGGAACCTATCAGCC Spy49_0715 718895 - 719758 + | Putative ABC transporter Spy49_0716 719787 - 720437 + | Probable amino-acid ABC transporter permease protein yckA TERM 900 720460 - 720488 + F 100 -9.7 -4.33928 | opp_overlap 720458 720462, overlap 720462 TAAAAAACGAATATT AACCCTGGAAATA TCA TATTTTCAGGGTC TTTCTATTTAAAATG TERM 901 720486 - 720462 - f 81 -10.1 -3.46844 | opp_overlap 720460 720462, overlap 720458 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA TERM 902 720462 - 720486 + F 95 -12.3 -3.76586 | opp_overlap 720462 720458, overlap 720460 AAAAACGAATATTAA CCCTGGAAATA TCA TATTTTCAGGG TCTTTCTATTTAAAA ung 720570 - 721223 + | Uracil-DNA glycosylase TERM 903 721933 - 721944 + G 72 -4.4 -4.82678 | TTTTAATGAAGGTAT TGCT GAGG AGCA TTTTCATTTTTGTGG pyrC 721355 - 722623 + | Dihydroorotase TERM 904 722645 - 722669 + T 100 -13.7 -4.33767 | opp_overlap 722645 AGTTAAAACAAAAAA GCTTGACTTTC AGA GAAAGTCAGGC TTTTAGTAAATTTAT TERM 905 722669 - 722645 - T 100 -11.5 -5.80951 | opp_overlap 722645 AGTTAAAACAAAAAA GCTTGACTTTC AGA GAAAGTCAGGC TTTTAGTAAATTTAT Spy49_0719c 723322 - 722681 - | hypothetical protein TERM 906 723404 - 723385 - H 73 -3.6 -5.06103 | overlap 723388 AGAATTCGGAAAAAA TTAGCAAA TTAT TTTGCAAA ATTGGTAAAAAACTT TERM 907 724092 - 724074 - g 81 -7.5 -4.56597 | TTTTCTTTTGAAAAA TGTCAAG ATGAG CTTGACA GATCTTCGTGGAGAT TERM 908 724700 - 724684 - g 86 -2.3 -6.01725 | AAGAAAAACAAAAAA GACAA AGGCTTG TTGTC GGGAAAATTAACTCC parE 723457 - 725406 + | Topoisomerase IV subunit B parC 725497 - 727956 + | Topoisomerase IV subunit A TERM 909 727953 - 727978 + F 100 -10.7 -4.49344 | opp_overlap 727952 727960, overlap 727960 GGTAGCTAGAACACG TTAAAAAGAGT GAAA ACTCTTTTTAA TTTTATGGTAAATTT TERM 910 727971 - 727960 - f 70 -4.4 -4.67556 | opp_overlap 727953 727960, overlap 727952 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGG TERM 911 727960 - 727971 + F 76 -4.4 -5.1417 | opp_overlap 727960 727952, overlap 727953 AGAACACGTTAAAAA GAGT GAAA ACTC TTTTTAATTTTATGG TERM 912 728226 - 728215 - g 71 -7.2 -3.91858 | opp_overlap 728215 TACATATCTCAGAAA GCGC TCCA GCGC TTCATTATGGACAAC bcaT 728079 - 729101 + | Branched-chain amino acid aminotransferase TERM 913 729123 - 729108 - f 75 -9 -3.46858 | opp_overlap 729108, overlap 729106 729104 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG TERM 914 729108 - 729123 + F 95 -9 -5.50313 | opp_overlap 729108 729106 729104 GTAGATTAAAATAGA GCTTGC TCTT GCAAGC TTTTTTGATTTTGTG Spy49_0723 729165 - 729395 + | hypothetical protein TERM 915 729423 - 729448 + F 71 -7.8 -3.61517 | ACACTTGCCAGCTTA CAAAAACTAT GATAGA ATAGTTTTTG TTGTTACGGAAAGAT TERM 916 729763 - 729748 - f 85 -9 -4.26344 | opp_overlap 729748 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT TERM 917 729748 - 729763 + F 89 -9 -4.64334 | opp_overlap 729748 ATATTGTTATCAAAA GCTAGC ATTG GCTAGC TTTTGTTGGAGGATT rpsA 729786 - 730991 + | SSU ribosomal protein S1p TERM 918 731028 - 730997 - T 85 -11.8 -3.12069 | opp_overlap 730998 731004, overlap 731004 TGAATTGTAATAAAT CTAAAAAGTTGAGG TTTT CCTCAACTTTTTAT TGTCTTCTGGTTAGA TERM 919 730998 - 731027 + T 100 -15.3 -3.79995 | opp_overlap 730997 731004, overlap 731004 GAATTGTAATAAATC TAAAAAGTTGAGG TTTT CCTCAACTTTTTA TTGTCTTCTGGTTAG TERM 920 731021 - 731004 - T 100 -9.9 -4.86939 | opp_overlap 730998 731004, overlap 730997 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 921 731004 - 731021 + T 100 -9.9 -5.31072 | opp_overlap 731004 730997, overlap 730998 TAATAAATCTAAAAA GTTGAGG TTTT CCTCAAC TTTTTATTGTCTTCT TERM 922 731194 - 731209 + T 91 -2.6 -6.11392 | gap 1, opp_overlap 731187 731194, overlap 731196 AAATCATATAAAAAA GCCTTAT TTG AT-AGGC TTTTTTTGTTTCTTT TERM 923 731209 - 731194 - T 76 -2.6 -5.43487 | gap 1, opp_overlap 731194 731196, overlap 731187 AAATCATATAAAAAA GCCTTAT TTG AT-AGGC TTTTTTTGTTTCTTT TERM 924 731401 - 731411 + T 71 -5.4 -4.58663 | opp_overlap 731401 TAATTATTGATGAGA TGGT GAA ACCA TTTTTAGCAAGTGCT Spy49_0725c 731795 - 731493 - | hypothetical protein TERM 925 731937 - 731919 - H 82 -3.1 -5.75342 | TTTTGTGAAAAAAAA GACAAAC AAATG GCTTGCC TAGACTTGTTTTTCC Spy49_0726 731996 - 732982 + | hypothetical protein TERM 926 732993 - 733012 + F 89 -7.2 -5.31275 | opp_overlap 732993 CCTAATATCTCAAAA CAAATCAG GAAA CTGGTTTG TTTTTTGTGATACAG TERM 927 733058 - 733042 - f 75 -8.1 -3.86916 | GATGATGAGACCAAA TTGCAAA GAC TTTGCAA CAAGATACCAGTGAA Spy49_0727 733293 - 733700 + | hypothetical protein TERM 928 734383 - 734396 + G 76 -4.5 -5.06414 | opp_overlap 734377 CGGCATTAACAGCAC CTGCT AGTA GGCAG TTTTTATTAGGACAG Spy49_0728 733950 - 734858 + | Putative exfoliative toxin TERM 929 734952 - 734925 - T 71 -3.3 -5.20216 | opp_overlap 734925 GAGATTACTAAAAAA GAGGCCGGCAC TTTAAT GTGCTAGTCTC TTTTAAATTGATCTA TERM 930 734983 - 735002 + T 71 -3.4 -5.15117 | overlap 734997 TTGTCACGTTAGCGA GCTACACG ACGA CGCGCAGC TTTTTTGCGGTTTTC Spy49_0729c 735152 - 734976 - | hypothetical protein TERM 931 735009 - 735032 + g 76 -3.1 -5.29445 | overlap 734997 ACGCGCAGCTTTTTT GCGGTTTTC TTCAAT GAAAGCAGC TTTTTCTTCTTCAGG miaA 735286 - 736185 + | tRNA delta(2)-isopentenylpyrophosphate transferase hflX 736258 - 737496 + | GTP-binding protein HflX Spy49_0732 737489 - 738124 + | hypothetical protein Spy49_0733 738139 - 739068 + | Ribonuclease Z Spy49_0734 739228 - 739833 + | Putative oxidoreductase TERM 932 739886 - 739868 - g 85 -8.9 -4.17186 | opp_overlap 739868 739871, overlap 739863 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 933 739868 - 739886 + G 74 -8.9 -3.59979 | opp_overlap 739868 739863, overlap 739871 GAAAATAAAAGACAA GAAGCCA GATGA TGGCTTC TTTAAGCTAGCAAAG TERM 934 739922 - 739908 - g 80 -6.4 -4.82128 | CTAGCAAAGACAAAA GGTCTA ACC CAGACC GCCGCTCAGTTGATT recJ 739830 - 742040 + | Single-stranded-DNA-specific exonuclease recJ apt 742190 - 742708 + | Adenine phosphoribosyltransferase dnaD 742789 - 743472 + | DNA replication protein DnaD, putative nth 743469 - 744125 + | Endonuclease III TERM 935 744109 - 744137 + F 93 -7.5 -5.61596 | opp_overlap 744115 ATCAAAATACTTATG GAAAATCGAAAGC CTA GCCTTTGGTTTTC TTTTTTTATGGAGGT Spy49_0739 744197 - 744883 + | hypothetical protein TERM 936 745581 - 745571 - g 73 -6.8 -4.15066 | overlap 745578 745579 TACGGAGAAATTAAA GGAG AAA CTCC AAGGGTGGAAAGAAG Spy49_0740 744873 - 745661 + | hypothetical protein TERM 937 746535 - 746523 - g 70 -3.4 -4.83615 | opp_overlap 746523 CAGGTTTTAGAAAAA CTTG AAATG CAAG CTCTTACTAATTTGC Spy49_0741 745701 - 746825 + | Putative oxidoreductase rmlA 746864 - 747733 + | Glucose-1-phosphate thymidylyltransferase rmlC 747733 - 748326 + | dTDP-4-dehydrorhamnose 3,5-epimerase rmlB 748570 - 749610 + | dTDP-glucose 4,6-dehydratase TERM 938 749623 - 749657 + T 86 -5.1 -5.66338 | gap 1, opp_overlap 749623 749620 749613 TAAAACATTAAAGAA CCTTGTCAT-ATCAAC GTTT GTTGAAGATGTCAAGG TTTTTTCTTGTGTTT Spy49_0746c 750832 - 749693 - | Prophage ps2 probable integrase TERM 939 749790 - 749802 + g 77 -6.3 -4.57341 | TCAGCATGTCCAACT CTATC CAT GATAG TTTTTAAGGGCACTT Spy49_0747c 751226 - 750960 - | hypothetical protein Spy49_0748c 751624 - 751238 - | Hypothetical phage associated protein SpyM3_1264 Spy49_0749c 751977 - 751627 - | Putative repressor-phage associated Spy49_0750 752273 - 752443 + | hypothetical protein Spy49_0751c 753257 - 752469 - | hypothetical protein TERM 940 753364 - 753338 - g 71 -3.8 -4.91109 | overlap 753339 GTTGGACGAGAAAAA GTTGTTACCTTC CTA AAAAGTAACAAT ATCAAGAAGAGTGAT Spy49_0752 753308 - 753499 + | Putative antirepressor protein TERM 941 753531 - 753510 - f 79 -4.4 -5.22943 | AGTAAATGCAAAAAA GGAACTGA TTGCAG TCAGCCCC TTATCAAAAATTCTA TERM 942 753777 - 753759 - g 74 -6 -4.47551 | ATCCAACGCATAAAA TCGTATTC ATT GATTACGA AGGTTTCCGTTTATT Spy49_0753 753578 - 753889 + | Putative excisionase Spy49_0754 753891 - 754061 + | hypothetical protein-phage associated Spy49_0755 754054 - 754257 + | hypothetical protein Spy49_0756 754254 - 754640 + | hypothetical protein Spy49_0757 754786 - 754989 + | hypothetical protein-phage associated TERM 943 755030 - 755012 - f 100 -9.6 -5.15634 | GATTGCATCAAAAAA GACGGCTT AGG AAACCGTC AACAATTATACACAA TERM 944 755254 - 755243 - g 75 -5.8 -4.75472 | CTGATATTAAGAAAA TGGC TAAA GCCA AGGTTGAAGAAGGGA Spy49_0759 755077 - 755376 + | hypothetical protein-phage associated TERM 945 755842 - 755831 - g 70 -5.8 -4.4078 | GTCTGCTAACCAAAA CCCA CAGA TGGG GCTGTACGCTCTAGG Spy49_0760 755376 - 756533 + | Hypothetical phage associated protein SpyM3_1445 Spy49_0761 756548 - 757105 + | hypothetical protein TERM 946 757107 - 757131 + F 76 -6.4 -4.56597 | gap 1, opp_overlap 757108 757110, overlap 757108 ACGACATTTTATAGT AGAGG-GCCTC TTTA GAGGCTCCTCA TTTTTAAAGGAGAGG TERM 947 757130 - 757108 - f 75 -9.9 -2.64243 | gap 1, opp_overlap 757108 757107, overlap 757110 CGACATTTTATAGTA GAGG-GCCTC TTTA GAGGCTCCTC ATTTTTAAAGGAGAG TERM 948 757108 - 757130 + F 81 -9.9 -3.33744 | gap 1, opp_overlap 757108 757110, overlap 757107 CGACATTTTATAGTA GAGG-GCCTC TTTA GAGGCTCCTC ATTTTTAAAGGAGAG Spy49_0762 757148 - 759070 + | DNA polymerase TERM 949 760325 - 760305 - g 74 -3.9 -5.06451 | overlap 760306 TACGACGCTAAAAAA GGCATCTGG TTG CCAAACGCA GAGGAGTATTTGAAG Spy49_0763 759075 - 761459 + | Putative DNA primase/helicase-phage associated TERM 950 761562 - 761544 - f 93 -6.2 -5.93252 | overlap 761537 761552 TTTAAAAATAAAAAA TTTAAAAA TAA TTTTTAAA AAATCAAAACTGAAT Spy49_0764 761827 - 762120 + | hypothetical protein TERM 951 762882 - 762870 - g 73 -7.7 -3.95621 | opp_overlap 762870 762869 ATGAAAGCCTACAAA CAGCT TGA AGCTG ATTTGGTGTTGGAGT Spy49_0765 762117 - 763439 + | Putative helicase-phage associated Spy49_0766 763603 - 763875 + | hypothetical protein Spy49_0767 764008 - 764424 + | Putative transcriptional activator-phage associated TERM 952 764483 - 764505 + F 83 -6.3 -4.84274 | opp_overlap 764488 TAGTATGAGTTTGAA GGTAAGGCA GATAG TGTCTTGCC TTTTTGCTATGCTTG Spy49_0768 764496 - 764966 + | Terminase small subunit Spy49_0769 764956 - 766233 + | Terminase large subunit TERM 953 766755 - 766735 - gf 71 -5.3 -4.48175 | AAAACCGAAGTAAAA CTCTACCAG CTC CCGGCCGAG CAAACTTTTGTTATC Spy49_0770 766249 - 767781 + | Hypothetical phage associated protein SpyM3_1434 TERM 954 769087 - 769059 - gf 80 -4.6 -5.24796 | TTGATATAACAAAAA CCCCTTTATC ATTTGAAGA GATAATGGGG CAATTAGAACATATT Spy49_0771 767747 - 769189 + | Hypothetical phage associated protein SpyM3_1433 TERM 955 769201 - 769178 - f 70 -3.8 -4.91109 | gap 1 GCTGTATTAGAAAAA GAAGGAGGATG ACC CA-CCGCCTCC ACAGTAAACTGCTTC TERM 956 769723 - 769738 + G 85 -5.4 -5.24796 | opp_overlap 769723 CAAATCTAAACCAAA GTCGTA GCAA TACGGC TTTTTATTGTGTCCA Spy49_0772 769410 - 769802 + | hypothetical protein-phage associated Spy49_0773 769845 - 770414 + | Hypothetical phage associated protein SpyM3_1430 TERM 957 770856 - 770835 - g 71 -3.7 -4.90918 | overlap 770836 ACAAAACCAACAAAA GTTAAAGGC GTTG GCCTTCAAA AAGCGCTGTCTGCAT Spy49_0774 770427 - 771314 + | putative major head protein (phage associated) TERM 958 771375 - 771414 + G 78 -10.8 -2.99471 | gap 1, overlap 771379 TCTTTATAGGTATTT CCAAGGGTGATGGTGCGCA AGA TGAGC-TCATCACCCTTGC TATATATGAAAGTAA TERM 959 771379 - 771410 + G 77 -10.2 -3.35197 | gap 1, overlap 771375 TATAGGTATTTCCAA GGGTGATGGTGCGCA AGA TGAGC-TCATCACCC TTGCTATATATGAAA Spy49_0775 771326 - 771682 + | Hypothetical phage associated protein SpyM3_1428 Spy49_0776 771693 - 771971 + | hypothetical protein-phage associated Spy49_0777 771968 - 772312 + | hypothetical protein TERM 960 772389 - 772360 - g 75 -3 -5.32608 | gap 1, opp_overlap 772360 AAAAAAGGTAAAAAA TAGATTGGGA-GT TTTAG ACATACCAATCTA TTTTAAATTGCCTAA Spy49_0778 772316 - 772675 + | hypothetical protein-phage associated Spy49_0779 772687 - 773286 + | Conserved phage protein Spy49_0780 773393 - 773794 + | hypothetical protein-phage associated TERM 961 774033 - 774022 - g 72 -4.4 -4.74132 | overlap 774024 AGATCGTATCAAAAA GCTA GCCG TAGC CAAGCCGATAGTGAT Spy49_0781 773869 - 774102 + | hypothetical protein-phage associated TERM 962 775992 - 775972 - g 70 -9.7 -2.73124 | overlap 775971 CTTTAGCCCCTAAAG TCATTGCCC TTT GGGCAGTGA TGAACCCCGCTAGCG TERM 963 778128 - 778108 - g 73 -10.5 -2.77678 | overlap 778091 778103 778105 CAATAGCTAACAGCA TTGCCGCTA ATG TAGCAGCAA CAATTAGACGCGCTT Spy49_0782 774117 - 778499 + | Tail protein TERM 964 778562 - 778532 - g 81 -5.4 -5.1244 | opp_overlap 778529 778536, overlap 778534 778536 TTATTAATAGAAAAA GAGAGTCAGGCAAC TAG GTTGTCTGACTTTG GTATTTATAATATTG TERM 965 778560 - 778534 - g 77 -8 -4.18115 | opp_overlap 778529 778536, overlap 778532 778536 ATTAATAGAAAAAGA GAGTCAGGCAAC TAG GTTGTCTGACTT TGGTATTTATAATAT TERM 966 778536 - 778558 + G 93 -12.8 -4.05181 | opp_overlap 778534 778532 778536, overlap 778529 TAATAGAAAAAGAGA GTCAGGCAAC TAG GTTGTCTGAC TTTGGTATTTATAAT TERM 967 778558 - 778536 - g 83 -10.6 -3.66691 | opp_overlap 778536 778529, overlap 778534 778532 TAATAGAAAAAGAGA GTCAGGCAAC TAG GTTGTCTGAC TTTGGTATTTATAAT Spy49_0783 778511 - 779353 + | hypothetical protein-phage associated Spy49_0784 779363 - 781342 + | Hypothetical phage associated protein SpyM3_0930 TERM 968 781540 - 781525 - g 74 -9 -3.5936 | overlap 781532 CCCAAAGGTCCTAAA GGAGAC ACTG GTCTCC AAGGTAAAACTGGAG TERM 969 782370 - 782355 - g 76 -7.6 -4.29738 | CGAGACTTACGAAAA CAAGCT CAAC AGCTTG CGTGCGGAGTTTACT Spy49_0785 781339 - 783582 + | Phage hyaluronidase Spy49_0786 783594 - 783755 + | hypothetical protein Spy49_0788 783758 - 784369 + | hypothetical protein Spy49_0789 784379 - 784834 + | Putative holin protein-phage associated TERM 970 785080 - 785105 + G 95 -14.1 -3.21199 | opp_overlap 785078, overlap 785080 785082 785096 CACGACAAAATATTT TGGCATTGCCC TTTG GGGCAATGCTA TTGACTTACTAGATA TERM 971 785082 - 785103 + G 95 -14.5 -3.16676 | opp_overlap 785078, overlap 785080 785080 785096 CGACAAAATATTTTG GCATTGCCC TTTG GGGCAATGC TATTGACTTACTAGA Spy49_0790 784952 - 785704 + | Phage-associated cell wall hydrolase TERM 972 785725 - 785761 + F 82 -4.4 -5.40072 | opp_overlap 785727 785732, overlap 785732 785757 AAAGCTCCGAGATAA GACAAAACCGCTCAGA TAATT TCTGGGCGGTTTTTAA TTTTTTTCACAAAAA TERM 973 785759 - 785727 - f 77 -9.2 -3.31905 | opp_overlap 785725 785732 785757, overlap 785732 AGCTCCGAGATAAGA CAAAACCGCTCAGA TAATT TCTGGGCGGTTTTT AATTTTTTTCACAAA TERM 974 785732 - 785754 + F 100 -11.3 -5.31158 | opp_overlap 785727 785732, overlap 785725 CGAGATAAGACAAAA CCGCTCAGA TAATT TCTGGGCGG TTTTTAATTTTTTTC TERM 975 785754 - 785732 - f 100 -9.1 -4.76963 | opp_overlap 785732 785725, overlap 785727 CGAGATAAGACAAAA CCGCTCAGA TAATT TCTGGGCGG TTTTTAATTTTTTTC Spy49_0791 785870 - 786157 + | hypothetical protein speH 786363 - 787073 + | Streptococcal pyrogenic exotoxin H (SpeH) TERM 976 787510 - 787459 - f 100 -14.3 -4.9448 | gap 2, opp_overlap 787466, overlap 787466 AGTGATTAAATAAAA CATTAAAGAACCTTGTCATATCAAC GATA ATTGATATGACAAGGTTCTTT--TG ATAGTTTAAATTGAT TERM 977 787466 - 787505 + F 100 -19.7 -4.39386 | opp_overlap 787466 787459 AAATAAAACATTAAA GAACCTTGTCATATCAA CGATAA TTGATATGACAAGGTTC TTTTGATAGTTTAAA TERM 978 787505 - 787466 - f 100 -20.4 -4.14724 | opp_overlap 787466, overlap 787459 AAATAAAACATTAAA GAACCTTGTCATATCAAC GATA ATTGATATGACAAGGTTC TTTTGATAGTTTAAA mutX 787677 - 788153 + | Putative 7,8-dihydro-8-oxoguanine-triphosphatase Spy49_0794 788211 - 789392 + | hypothetical protein Spy49_0795 789382 - 790629 + | hypothetical protein TERM 979 790672 - 790635 - T 100 -7.7 -5.89921 | opp_overlap 790635 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGAA ATAA CTTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA TERM 980 790635 - 790672 + T 100 -13.6 -5.32565 | opp_overlap 790635 ATCAGAATAAAAAAA CAGTTCTCCTAGGGGA AATAAC TTTCCTAGGAGAGCTG TTTTTTAGTTGCTTA Spy49_0796c 792340 - 790688 - | Putative fibronectin-binding protein-like protein A TERM 981 791017 - 791028 + g 72 -4.4 -4.70659 | AGTTATTGCGTCCCA CCAT GAGA ATGG TTTTTCCATCTGAAG TERM 982 792600 - 792624 + H 93 -7.9 -5.45802 | opp_overlap 792599 TTGGATTTCACAAGG GCGCCTAGTAA TCA TTACTAAGTGC TTTTTCTTTTGAGAA TERM 983 793203 - 793185 - gH 74 -4.6 -4.88407 | overlap 793187 TGATTTAATGAAAAA TCTGACAC CAC ATGTCAAA ACAGTTGGAATTTTA Spy49_0797 792694 - 793692 + | Putative ABC transporter substrate-binding protein Spy49_0798 793643 - 793861 + | hypothetical protein Spy49_0799 794037 - 794906 + | Putative ABC transport protein Spy49_0800 794903 - 795661 + | Putative ABC transporter TERM 984 795675 - 795699 + F 85 -6.5 -5.38497 | opp_overlap 795662 795675 AATCAACGATCTAAA TCATTGACTAA TAA TAAGTCAGTGA TTTTTTGATTTCCAT Spy49_0801 795865 - 797526 + | hypothetical protein TERM 985 797536 - 797563 + F 89 -9.3 -4.19735 | gap 1, opp_overlap 797536 797535 797533, overlap 797540 CGTTAGTGAAAATAG GAAGGTTAGGCA AAAAC TGCCTA-CCTTC TTTGATTTTAACAAC TERM 986 797563 - 797536 - f 76 -10 -2.81208 | gap 1, opp_overlap 797536 797540, overlap 797535 797533 CGTTAGTGAAAATAG GAAGGTTAGGCAA AAA CTGCCTA-CCTTC TTTGATTTTAACAAC estA 797659 - 798444 + | Tributyrin esterase Spy49_0804 798474 - 798800 + | hypothetical protein TERM 987 798809 - 798824 + F 91 -5.4 -5.80364 | opp_overlap 798809 AAACTAGGCTGAAAA TGTCCT CAAA AGGGCA TTTTTTTGTTAGAAT TERM 988 799641 - 799625 - g 74 -5.1 -4.66318 | AGTAGCCGAAGAAAA GCAGTTT GAC AAACAGC AAAAAGAAATTGCCA TERM 989 800466 - 800441 - g 85 -7.6 -4.84359 | gap 1, overlap 800457 TTACCTTGAGAAAAA GGCAGAGCTAG AAGAA CTAGCCC-GCC TAGCAGCAGGAGAGA Spy49_0805 798846 - 800753 + | Putative ABC transporter TERM 990 800757 - 800783 + F 88 -7.5 -4.94992 | gap 1, opp_overlap 800757 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGC TERM 991 800783 - 800757 - f 88 -7.5 -5.02439 | gap 1, opp_overlap 800757 ATAGAATCATAAAAA TAAGCTTTAGCA GTTT TGCTAA-GCTTA TTTTTATCGCTTTGC TERM 992 801095 - 801111 + G 73 -9.5 -3.1478 | opp_overlap 801093, overlap 801066 801093 AAAATGGAACGTATT CGTGAAT TTG ATTCACG TATTAATAAACTCGT TERM 993 801844 - 801833 - g 80 -4.4 -5.28942 | GAGTGGAAAGAAAAA GATC CAAT GATC AAATATCGTACTTAT acoA 801026 - 802006 + | Pyruvate dehydrogenase E1 component alpha subunit acoB 802062 - 803063 + | Pyruvate dehydrogenase E1 component beta subunit TERM 994 803359 - 803320 - g 81 -5.8 -5.05782 | gap 1, opp_overlap 803333 ATCGAGTGGAAAAAA CAAGAAGGTGAT-ACCGTC AAT GAAGGTGATATCCTTCTTG AAATCATGTCAGACA TERM 995 804305 - 804325 + G 71 -9.8 -2.91342 | overlap 804304 CTGTTATCCATGGGG CTGACAAG ATGAG CTTGTCAG ATTTCGTGCTTGCTT acoC 803248 - 804657 + | Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex TERM 996 804813 - 804795 - f 83 -10.3 -3.25356 | overlap 804790 TGATAAGCAATTGAA TCCGAGC GAAAA GCTCGGA TAAAAATGGTAAGGG TERM 997 805559 - 805526 - g 88 -9.1 -4.63184 | gap 1 AACTTACCTTAAAAA TGCTGAAATCCTTGAT GGT ATCAAG-ATTGCAGCA GGACGTGGGATTAAC TERM 998 806033 - 806017 - g 79 -5.1 -5.09426 | overlap 806018 TTGAACTTCAAAAAA TCCTTTC TAA GAAAGGC ATGAAGATCAAAACA TERM 999 806032 - 806018 - g 73 -8.6 -3.64933 | overlap 806017 TGAACTTCAAAAAAT CCTTTC TAA GAAAGG CATGAAGATCAAAAC acoL 804984 - 806747 + | Dihydrolipoamide dehydrogenase TERM 1000 806826 - 806866 + T 100 -14.3 -4.98522 | gap 1, opp_overlap 806810 806835 CACAACTATGAACTG CGCCCCAAA-CGTTAGAT AAAAAA ATCTAACGGTTTGGGGTG TTTTTGTATGACATT TERM 1001 806856 - 806835 - T 71 -7.4 -3.53761 | opp_overlap 806826 GAACTGCGCCCCAAA CGTTAGAT AAAAAA ATCTAACG GTTTGGGGTGTTTTT TERM 1002 806934 - 806921 - T 74 -2.3 -5.42259 | opp_overlap 806921 TTAGCGCTAAAAAAA CCGAG AGAA CTCCG TTTGAAAGAAGCATC TERM 1003 807138 - 807094 - T 88 -7.3 -5.13722 | opp_overlap 807100, overlap 807095 807100 CGTATCAAAATAAAA CGAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTACT TAAAATAGAGTAGCC TERM 1004 807137 - 807095 - T 89 -10.8 -3.67149 | opp_overlap 807100, overlap 807094 807100 GTATCAAAATAAAAC GAAAAGGACTTAGTCCTCTA CAA TACAGAACTAAATCCTTTAC TTAAAATAGAGTAGC TERM 1005 807132 - 807100 - T 100 -9.3 -4.83677 | opp_overlap 807100, overlap 807095 807094 AAAATAAAACGAAAA GGACTTAGTCCTCTA CAA TACAGAACTAAATCC TTTACTTAAAATAGA hylA 809839 - 807422 - | Extracellular hyaluronate lyase TERM 1006 810491 - 810463 - g 82 -4 -5.44119 | gap 1 TTGATGGCAAAAAAA TTTGTGGTAATGC TCAA GC-TTACTACAAA GGTCGCATGATGCAC Spy49_0812 810072 - 811061 + | Lipoate-protein ligase A TERM 1007 811141 - 811109 - T 80 -6.3 -4.76171 | opp_overlap 811109, overlap 811104 GAAAAAACTATAAAA CTCCTAAGCGAAATA TCG TGTCCTGCTTAGGAG TTTTTGTTTGATGAC TERM 1008 811109 - 811141 + T 85 -6.3 -5.33405 | opp_overlap 811104 811109 GAAAAAACTATAAAA CTCCTAAGCGAAATA TCG TGTCCTGCTTAGGAG TTTTTGTTTGATGAC cobQ 811961 - 811170 - | Cobyric acid synthase murC2 813304 - 811961 - | Putative UDP-N-acetylmuramyl tripeptide synthetase TERM 1009 812089 - 812104 + g 75 -5.4 -4.7219 | TTTCTATGATTTGCT CGAGCT TTTC AGCTTG TTTTATCTTAGTATC TERM 1010 813997 - 814021 + G 72 -8.7 -3.54935 | GCAGCCTGTGCTTAC TTGCCTTTG TCAGAAT CAAAGGCAA TTTCCAAAGAATTTG Spy49_0815 813406 - 814257 + | hypothetical protein Spy49_0816 814254 - 815210 + | hypothetical protein TERM 1011 815497 - 815509 + G 70 -7.7 -3.63298 | overlap 815495 ACTTGGCGTTTTAGC GACAC CTG GTGTC TCTTATTTAGTTAGA TERM 1012 815580 - 815534 - g 76 -4.5 -5.1523 | gap 1, overlap 815535 GTTAGAACAGAAAAA GCAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTGA CAATGGCATCAAATT TERM 1013 815579 - 815535 - g 70 -8 -3.68053 | gap 1, overlap 815534 TTAGAACAGAAAAAG CAAGTGCAGGTGTGATGATTT CTGC AAGTCATAAC-CCTGCGCTTG ACAATGGCATCAAAT Spy49_0817 815264 - 816616 + | Phosphoglucosamine mutase TERM 1014 816656 - 816635 - f 81 -8.1 -4.11183 | opp_overlap 816639, overlap 816639 GTTGAGTACAAACAA GAAACCTTA TTTC TAAGGCTTC TGTCAACAATTGGAA TERM 1015 816652 - 816639 - f 71 -5.3 -4.63952 | opp_overlap 816639, overlap 816635 AGTACAAACAAGAAA CCTTA TTTC TAAGG CTTCTGTCAACAATT TERM 1016 816700 - 816673 - f 70 -7 -3.72051 | opp_overlap 816673 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTATAAATTGCTA TERM 1017 816673 - 816700 + F 93 -9.2 -4.48221 | opp_overlap 816673 GTCAACAATTGGAAA GAGGCTTGGG GCGTTTAG CCCAAGTCTC TTTTATAAATTGCTA TERM 1018 816828 - 816812 - g 70 -9.5 -2.7035 | opp_overlap 816811 816810 816826 TTTACTTAGACATGA TTCCTGA ATT TCAGGAA GGTTATGCTTCATAT Spy49_0818 816739 - 817380 + | hypothetical protein hemN 817377 - 818573 + | Coproporphyrinogen III oxidase, oxygen- independent Spy49_0820 818583 - 819335 + | Putative acyl-ACP thioesterase Spy49_0821 819335 - 820099 + | Phosphatase NagD predicted to act in N- acetylglucosamine utilization subsystem Spy49_0822 820096 - 820731 + | hypothetical protein TERM 1019 820797 - 820767 - f 70 -8.4 -3.23708 | opp_overlap 820772, overlap 820772 TTTCCCTAAAAATGA TAAAACAAGCGTTT TGA AAGCGCTTGTTTTT TGGTTTGCAGTCAGA TERM 1020 820792 - 820772 - f 86 -8.3 -4.72556 | opp_overlap 820772, overlap 820767 CTAAAAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTGGTTTGCAG TERM 1021 820772 - 820792 + F 100 -10.5 -5.37593 | opp_overlap 820772 820767 CTAAAAATGATAAAA CAAGCGTTT TGA AAGCGCTTG TTTTTTGGTTTGCAG TERM 1022 820850 - 820836 - f 100 -11.4 -5.58074 | opp_overlap 820835 820834 GAAGTATCAAAAAAA GCACCG ACT CGGTGC CACTTTTTCAAGTTG TERM 1023 821508 - 821520 + G 74 -4.1 -5.14563 | opp_overlap 821486 ATAGTTTCTTTCATC GACTT GAA GAGTC TTTTTTGGTAGAAGA Spy49_0823 821210 - 825316 + | hypothetical protein TERM 1024 825419 - 825433 + G 70 -3.6 -4.89477 | CGGAGCTGATCCATT TATCAG AAA TTGATA TTTTGTTATTAGAAA TERM 1025 825677 - 825692 + G 73 -7.6 -4.09685 | ATCAATCTTGCTATT TAGGAG CATG CTCCTA TTTTGAAAAATCCCA Spy49_0825 825316 - 826185 + | Lipoyl-binding domain protein Spy49_0826 826182 - 826523 + | hypothetical protein Spy49_0827 826513 - 827175 + | hypothetical protein Spy49_0828 827952 - 828122 + | Nucleoside diphosphate kinase TERM 1026 828176 - 828159 - f 83 -7.7 -4.65747 | opp_overlap 828159 828161 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 1027 828159 - 828176 + F 84 -5.5 -5.58179 | opp_overlap 828159, overlap 828161 TAATCCGTAAGAAAA GATAGGC AAAG GCCTACC TTTTTTGTTATAATA TERM 1028 828349 - 828334 - g 72 -9 -3.40175 | overlap 828330 828332 ATTTTGGAAAAGACA GAGACG GTTT CGTCTC GTGAAATGCAGGCTC TERM 1029 830001 - 830023 + G 83 -9.2 -3.9693 | overlap 830003 TGGTTCTGTCGAAGT CCCTCAAGAA GCC TTCTTGAGTG TTCTTTCAATGGATG TERM 1030 830003 - 830021 + G 79 -10.4 -3.57185 | overlap 830001 GTTCTGTCGAAGTCC CTCAAGAA GCC TTCTTGAG TGTTCTTTCAATGGA lepA-2 828223 - 830055 + | GTP-binding protein LepA TERM 1031 830152 - 830188 + F 73 -8.3 -3.67775 | opp_overlap 830160, overlap 830157 830160 ACTTTACAATCTCTT TCACATAACACTATAAT GGT ATTATAGTGTTATCTCA TTATTAGGTGAGCCT TERM 1032 830157 - 830183 + F 87 -12.6 -3.02459 | opp_overlap 830160, overlap 830152 830160 ACAATCTCTTTCACA TAACACTATAAT GGT ATTATAGTGTTA TCTCATTATTAGGTG TERM 1033 830160 - 830180 + F 82 -9.9 -3.64831 | opp_overlap 830160, overlap 830157 830152 ATCTCTTTCACATAA CACTATAAT GGT ATTATAGTG TTATCTCATTATTAG TERM 1034 830180 - 830160 - f 81 -9.9 -3.48395 | opp_overlap 830160 830157 830152 ATCTCTTTCACATAA CACTATAAT GGT ATTATAGTG TTATCTCATTATTAG sclB 830338 - 831435 + | SclB protein TERM 1035 831496 - 831475 - f 87 -13.1 -2.82666 | opp_overlap 831475, overlap 831472 831471 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA TERM 1036 831475 - 831496 + F 100 -13.1 -5.08824 | opp_overlap 831475 831472 831471 GGAAAGTAAAACTCA GAGAGAACC TCAA GGTTCTCTC TTTTTTGAATCAAGA csrA 831620 - 832057 + | Peptide methionine sulfoxide reductase msrB TERM 1037 832618 - 832646 + G 85 -5.4 -5.22289 | gap 1 CATTAAGGCAAAGGA TGAC-GAGGTTGC TAAG GCAATTTCAGTCA TTTTTCTCTTTAATA Spy49_0832 832187 - 833206 + | hypothetical protein TERM 1038 833217 - 833237 + F 100 -11.3 -5.80248 | opp_overlap 833217 833221 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 1039 833237 - 833217 - f 83 -11.3 -2.73067 | opp_overlap 833217, overlap 833221 GGTAATCAGACACGA GAAATCAGT TTG ACTGATTTC TTTTTTTGTATCTTA TERM 1040 833373 - 833387 + F 71 -3.5 -5.1356 | TGAGATAAGCAATTA CCGTT TATTC AGCGG TTTTTGTTAATAGAG Spy49_0833 833413 - 833838 + | PTS system, IIA component, putative TERM 1041 834017 - 834007 - g 71 -6.8 -4.13304 | AAATGACGCTTAAAA TGGC TGT GCCA AACGGCATGAAACTG Spy49_0834 833865 - 834356 + | PTS system, IIB component Spy49_0835 834449 - 835183 + | Putative phosphotransferase system (PTS), enzyme II component C Spy49_0836 835180 - 836019 + | Putative phospotransferase system (PTS), enzyme II component D TERM 1042 836027 - 836060 + F 100 -14.1 -5.0925 | opp_overlap 836027 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA TERM 1043 836060 - 836027 - f 93 -9.7 -4.24342 | opp_overlap 836027 TCTCCTAGCAATAAA GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC TTTTTCCTTTTAAGA Spy49_0837 836144 - 837793 + | Putative two-component sensor histidine kinase TERM 1044 838370 - 838357 - g 84 -6.7 -4.98616 | opp_overlap 838356 838357 TCAAAATATCAAAAA GCATC TTCA GATGC CTTTAAGTGATTACA Spy49_0839 837797 - 838585 + | Putative two-component response regulator TERM 1045 839456 - 839445 - g 70 -5.8 -4.45485 | ATCAGATGTACAAAA TGCC TTTG GGCA GTCAACTAGTAATAG Spy49_0840 838579 - 839625 + | Iron ABC transporter, iron-binding protein TERM 1046 840606 - 840596 - g 75 -5.4 -4.72497 | GAGTTATTAACAAAA GTCT TCA AGAC AGCCAAATGGGGTGA Spy49_0841 839741 - 841138 + | Succinate-semialdehyde dehydrogenase NADP+ TERM 1047 841709 - 841658 - g 81 -7 -4.77896 | gap 1, opp_overlap 841658 841657 841655, overlap 841659 TAATGAAGTTAAAAA GTTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAAG GTCTGTTTTTATTAC TERM 1048 841708 - 841659 - g 79 -10.5 -3.45653 | gap 1, opp_overlap 841658 841657 841655, overlap 841658 AATGAAGTTAAAAAG TTATTAGATAGGATTTTTCCATTT AAA AAGTGTAAAAATCCTATC-AATAA GGTCTGTTTTTATTA uvrC 841239 - 843035 + | Putative excinuclease ABC Spy49_0843 843221 - 843823 + | NADH dehydrogenase Spy49_0844 843948 - 845357 + | Xaa-His dipeptidase TERM 1049 845400 - 845378 - T 100 -16.4 -4.82667 | opp_overlap 845378 TTATGACAGCAAAAA GAGCTGGAAC ACT GTTCCAGCTC TTTTGTGATGATTAG TERM 1050 845378 - 845400 + T 100 -16.4 -4.51097 | opp_overlap 845378 TTATGACAGCAAAAA GAGCTGGAAC ACT GTTCCAGCTC TTTTGTGATGATTAG trmE 846801 - 845425 - | GTPase and tRNA-U34 5-formylation enzyme TrmE TERM 1051 846175 - 846192 + g 73 -7.1 -4.12066 | TGTTCGAAGGAGATT TTCCAAA AGGC TTTGGAA TTCTTGTGTTTTCTC TERM 1052 846999 - 846986 - H 70 -2.3 -5.24129 | GGTTTTGATAAAAAA CTGAC CTAA GACAG CAGGGGAGCATGCTC TERM 1053 847071 - 847092 + H 84 -3.7 -5.64274 | AACGTATTTGTACTT TCGTGTCTA GGTT TAGGTGCGA TTTTTTTGTACCTAG rplJ 847136 - 847636 + | LSU ribosomal protein L10p (P0) Spy49_0847 847701 - 847799 + | hypothetical protein rplL 847874 - 848065 + | LSU ribosomal protein L7/L12 (L23e) TERM 1054 848104 - 848126 + F 100 -15 -5.50499 | AAATAAGCTGATTAG CCCGCTATTT TTA AAATAGCGGG TTTTTTTGAATATCA TERM 1055 849610 - 849579 - g 100 -13.3 -5.73672 | opp_overlap 849579 AAACAATCAAAAAAA GACAGTTATGAAA GAATTT TTTCATAACTGTC TTTTTAGTTTACAGT TERM 1056 849579 - 849610 + G 100 -14 -4.99134 | opp_overlap 849579 AAACAATCAAAAAAA GACAGTTATGAAAG AATT TTTTCATAACTGTC TTTTTAGTTTACAGT dacA1 848292 - 849605 + | Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine- endopeptidase) Spy49_0850c 850620 - 849658 - | Polysaccharide deacetylase family protein TERM 1057 850436 - 850457 + g 71 -6 -4.21812 | GTTTCTTTTTTTGCC GTCTTTTT GTGATG AAAAAGAC TTATTTTAGGTACAA TERM 1058 850679 - 850693 + H 86 -2.8 -5.80727 | opp_overlap 850679, overlap 850671 TTTTAGAGAAAAGAA GGCT TGAAGTC AGCC TTTTTTCTTGTTTTT folC1 850952 - 852229 + | Dihydrofolate synthase / Folylpolyglutamate synthase folE 852264 - 852848 + | GTP cyclohydrolase I type 1 folP 852857 - 853657 + | Dihydropteroate synthase folQ 853664 - 854023 + | Dihydroneopterin aldolase folK 854020 - 854520 + | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase TERM 1059 854510 - 854526 + F 75 -7.3 -4.12188 | opp_overlap 854510 854512 TTTCAGCTCAACAGA CAGAGTT CTA GACTCTG TTTTCGGAGTAATGC TERM 1060 854612 - 854626 + F 93 -7.1 -5.42862 | opp_overlap 854612 TTTGATATAATAGTA TCGGC TTTAT GCCGA TTTTTTTACGCGTAT murB 854670 - 855557 + | UDP-N-acetylenolpyruvoylglucosamine reductase potA 855603 - 856757 + | Spermidine Putrescine transport ATP-binding protein potA potB 856741 - 857535 + | Spermidine Putrescine ABC transporter permease component potB potC 857532 - 858308 + | Spermidine Putrescine ABC transporter permease component potC potD 858301 - 859374 + | ABC transporter, periplasmic spermidine putrescine-binding protein potD TERM 1061 859379 - 859411 + T 73 -9.3 -2.87564 | opp_overlap 859378 859376 859386, overlap 859386 ATCGCAAATAAGCAC TCAAAAAGGCTGG TATTTCT CCAGCCTTTTTAA TGTATCGACAGATGA TERM 1062 859404 - 859386 - T 83 -7.4 -4.71382 | opp_overlap 859386 859379, overlap 859378 859376 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA TERM 1063 859386 - 859404 + T 88 -7.4 -4.84527 | opp_overlap 859378 859376 859386, overlap 859379 ATAAGCACTCAAAAA GGCTGG TATTTCT CCAGCC TTTTTAATGTATCGA Spy49_0861c 860094 - 859429 - | Putative two-component response regulator Spy49_0862c 861616 - 860075 - | Putative two-component sensor histidine kinase TERM 1064 860129 - 860145 + g 71 -7.3 -3.95022 | opp_overlap 860129 TGTTGTCATTGAGAA CTGTAAC TCG GTTACGG TTTGATGTTGATGGA TERM 1065 861064 - 861054 - G 89 -6.8 -5.26247 | CGAAAAGAAATAAAA CTGG TGA CCAG TAAACTAATAAGAAG TERM 1066 862838 - 862826 - g 70 -7.7 -3.6422 | opp_overlap 862814 862825, overlap 862824 TATCCCCTTAAAAGA GGTTG TGG CAACC CTTAGCTGGCAATAT malP 861777 - 863108 + | Putative L-malate permease Spy49_0864 863140 - 864306 + | NAD-dependent malic enzyme TERM 1067 864341 - 864387 + T 100 -19.3 -3.12378 | gap 1, opp_overlap 864341 864349, overlap 864349 AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1068 864387 - 864341 - T 100 -19.3 -3.64371 | gap 1, opp_overlap 864341 864349, overlap 864349 AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT TERM 1069 864349 - 864379 + T 93 -9.3 -4.55491 | gap 1, opp_overlap 864349 864341, overlap 864341 CTTTAAATCACAAAA TAAGTAGAAGCATA TTTC TA-GCTTCTACTTA TTTTGTGATTAGCTA TERM 1070 864379 - 864349 - T 93 -9.3 -4.61566 | gap 1, opp_overlap 864341 864349, overlap 864341 CTTTAAATCACAAAA TAAGTAGAAGCATA TTTC TA-GCTTCTACTTA TTTTGTGATTAGCTA Spy49_0865c 865437 - 864388 - | Putative zinc-containing alcohol dehydrogenase TERM 1071 865322 - 865334 + g 71 -4.8 -4.58395 | opp_overlap 865332 ATATGCAAATCAGTT CCAC AAATA GTGG TTTTTACCAACTGGA TERM 1072 865952 - 865969 + G 76 -7.1 -4.15106 | opp_overlap 865964 CCAGGCTCATTTGAT TTTTTGC ATAA GCAAAAA TTTTGGGACTTAGTC Spy49_0866 865673 - 866404 + | Class B acid phosphatase precursor TERM 1073 866452 - 866479 + F 83 -6.2 -5.15969 | opp_overlap 866470 AATTTCTTTCATCAC CCCACTGAGTAA CCAA TAGCCCAGTGGG TTTTTTGGGTTACAG TERM 1074 866852 - 866840 - g 82 -7.7 -4.53303 | overlap 866844 GATTCTGATATAAAA GGATC AGG GATCC CCCATGTCGAAGGAG TERM 1075 866888 - 866875 - g 75 -8.1 -4.04295 | CGAAGGAGAACTAAA GGGAC TAAT GTCCC CAGATTGGTGGAGTG TERM 1076 867182 - 867192 + G 74 -4 -5.05113 | overlap 867178 GCGCTAGTGGCTAGC TTAG TGG CTAA TTTTATTTCTCTGAA TERM 1077 867573 - 867584 + G 86 -4.4 -5.4477 | overlap 867581 GTTATGGAAGTGGCT TACC TGGA GGTA TTTTTTTACCCATTT Spy49_0867 866582 - 868114 + | Voltage-gated chloride channel family protein Spy49_0868 868277 - 868891 + | Platelet activating factor, putative Spy49_0869 869071 - 870180 + | hypothetical protein TERM 1078 870187 - 870208 + F 89 -6.7 -5.626 | gap 1, opp_overlap 870187 GCTATTTAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA TERM 1079 870208 - 870187 - f 95 -6.7 -5.81412 | gap 1, opp_overlap 870187 GCTATTTAAAAAAAA CAAGTTTCCT AAA AGGAA-CTTG TTTTTTTGTCGAATA radC 870247 - 870927 + | RadC-like DNA repair protein Spy49_0871c 871624 - 870929 - | Glutamine amidotransferase, class I Spy49_0872c 872278 - 871634 - | Redox-sensing transcriptional repressor rex TERM 1080 872400 - 872383 - R 88 -7.1 -5.1101 | GTATGAGTTAAAAAA GCTAAAA TTAG TTTTAGC ACTATATAATAGTAT Spy49_0873c 872877 - 872530 - | hypothetical protein Spy49_0874c 873994 - 872867 - | Cysteine desulfurase TERM 1081 873533 - 873543 + g 71 -6.8 -4.0802 | opp_overlap 873533, overlap 873529 GTCCTTAATAGGTAA CAGG TCA CCTG TTTCGTTATTGGCAT prs 874971 - 873991 - | Ribose-phosphate pyrophosphokinase TERM 1082 875068 - 875097 + r 81 -10.9 -2.75349 | opp_overlap 875070 875076, overlap 875065 875064 ACATCCCTATTTTAA CAGAAAAACAGAA AAAT TTCAGTTTTTCTG TCGCTTTTAGCCATT TERM 1083 875097 - 875076 - R 83 -6 -5.09762 | opp_overlap 875068 875065 875064, overlap 875070 ATTTTAACAGAAAAA CAGAAAAA TTTCAG TTTTTCTG TCGCTTTTAGCCATT Spy49_0876c 875689 - 875111 - | hypothetical protein TERM 1084 875443 - 875494 + g 73 -6.6 -4.21768 | opp_overlap 875433 TCATATCTTTTGCTT GTTCAAGAAAAAGAGGGACATTGT ACTC ACGATTCCCCACTTTTTCTGGCAC TTTTAAGGTTAATTC Spy49_0877 875777 - 876448 + | GTP pyrophosphokinase Spy49_0878 876423 - 877259 + | NAD kinase rluD 877256 - 878161 + | Ribosomal large subunit pseudouridine synthase, RluD subfamily pta 878165 - 879160 + | Phosphate acetyltransferase TERM 1085 879242 - 879262 + F 87 -6.8 -5.42259 | opp_overlap 879242 TGACATTATTAAAAA CGAGTTGG CCAGA CCATCTCG TTTTTTTGAAGGTGA TERM 1086 879262 - 879242 - f 83 -7.5 -4.79223 | opp_overlap 879242 TGACATTATTAAAAA CGAGTTGGC CAG ACCATCTCG TTTTTTTGAAGGTGA Spy49_0881 879286 - 880041 + | Putative short chain dehydrogenase/reductase Spy49_0882c 880924 - 880235 - | hypothetical protein TERM 1087 880270 - 880296 + g 78 -7.3 -4.33819 | gap 1, opp_overlap 880254 880249, overlap 880270 880271 880293 GGCCTGATGTGACAT C-GGACCAGCCA ACAA TGGCTTGTCCAG TTTCTTCTAAATACT TERM 1088 880271 - 880294 + g 76 -11 -2.51259 | opp_overlap 880254 880249, overlap 880270 880270 880293 GCCTGATGTGACATC GGACCAGCCA ACAA TGGCTTGTCC AGTTTCTTCTAAATA proV 881350 - 882078 + | L-proline Glycine Betaine ABC transport ATP- binding protein proV proX 882071 - 883597 + | L-proline glycine betaine binding ABC transporter protein proX / Osmotic adaptation TERM 1089 883605 - 883625 + F 84 -6.1 -5.27399 | AGAAATAAACAGAAA TGTTGGTCC GTA GGACTGGCA TTTTTTCGTCTCTTA Spy49_0885 883875 - 884858 + | GMP reductase Spy49_0886c 885152 - 884895 - | hypothetical protein TERM 1090 885088 - 885134 + g 90 -7.6 -5.20783 | gap 2, opp_overlap 885098, overlap 885089 885098 CTTGCTTGGTTTTTA ACCT--TGCAAAGTGAGAAACT CTTAT AGTTTCTCACTTTGCGGCAGGC TTTTTCTATTTGAAT TERM 1091 885089 - 885133 + g 83 -11.1 -3.70843 | gap 2, opp_overlap 885098, overlap 885088 885098 TTGCTTGGTTTTTAA CCT--TGCAAAGTGAGAAACT CTTAT AGTTTCTCACTTTGCGGCAGG CTTTTTCTATTTGAA TERM 1092 885122 - 885098 - G 88 -11.6 -3.57561 | opp_overlap 885089 885088 885098 TTTTAACCTTGCAAA GTGAGAAACT CTTAT AGTTTCTCAC TTTGCGGCAGGCTTT TERM 1093 885098 - 885122 + g 88 -11.6 -3.5394 | opp_overlap 885098, overlap 885089 885088 TTTTAACCTTGCAAA GTGAGAAACT CTTAT AGTTTCTCAC TTTGCGGCAGGCTTT xpt 885163 - 885744 + | Xanthine phosphoribosyltransferase TERM 1094 886444 - 886473 + G 71 -6.5 -4.13872 | CTTTTGAAATCACTT CTATTGTGATGAT GTGT ATCATCGCAACGG TTTCTATGGTTGAAT TERM 1095 886572 - 886545 - g 70 -3.4 -4.84274 | overlap 886547 CAATTATATGAAAAA CGTTTGCGCAAT GGTT ATCGCTCAAAAG GGATCGCAGTCTTTC Spy49_0888 885744 - 887027 + | Xanthine permease TERM 1096 887036 - 887050 + T 93 -7.1 -5.39721 | opp_overlap 887029 887036, overlap 887029 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA TERM 1097 887050 - 887036 - T 89 -7.1 -5.37865 | opp_overlap 887036 887029, overlap 887029 TGAATAATTAAAAAA CGGCT AATTG AGCCG TTTTTTCTGTGATCA Spy49_0891c 888029 - 887091 - | Putative thiamine biosynthesis lipoprotein TERM 1098 887456 - 887484 + g 72 -9.7 -3.07935 | overlap 887442 GTTTTTGAATGCCAA TTCGAAAAGTCTT GTC AGGGCTTTTCGGA TTAGGTCCATGAACT TERM 1099 888076 - 888053 - R 87 -11 -3.40403 | opp_overlap 888051 888050, overlap 888055 CTCTTTTTAGCAGAA TACCCCCACT AAGG AGTGGGGGAA GGTCATTATGATTTT TERM 1100 888074 - 888055 - R 93 -13.6 -3.27475 | opp_overlap 888051 888050, overlap 888053 CTTTTTAGCAGAATA CCCCCACT AAGG AGTGGGGG AAGGTCATTATGATT Spy49_0892c 888267 - 888082 - | Putative 4-oxalocrotonate tautomerase subunit tdk 888405 - 888974 + | Thymidine kinase TERM 1101 889376 - 889390 + G 75 -5.6 -4.78107 | GTGGTGCTGCTGGTG GCGATG AAG CAGCGC TTTTTGCTGGTGATC prfA 889009 - 890088 + | Peptide chain release factor 1 hemK 890088 - 890927 + | Putative protoporphyrinogen oxidase Spy49_0896 890911 - 891501 + | Sua5/YciO/YrdC family protein Spy49_0897 891519 - 891971 + | hypothetical protein TERM 1102 892841 - 892858 + G 79 -6.9 -4.57073 | opp_overlap 892839 892841 CTATTATTGATAATA CTGCGGC TATG GCAGCAG TTTTTGCACAAGATG Spy49_0898 891961 - 893217 + | Serine hydroxymethyltransferase Spy49_0899 893224 - 894201 + | hypothetical protein Spy49_0900 894202 - 894801 + | Pneumococcal vaccine antigen A-like protein TERM 1103 895119 - 895133 + G 72 -8.6 -3.46965 | opp_overlap 895116 895113 TTTGAGCAAGGAGGA CCAAGA CCA TCTTGG TTATGCTAGTCTGTT Spy49_0901 894811 - 896535 + | ABC transporter, ATP-binding/permease protein TERM 1104 897725 - 897705 - g 85 -12.7 -3.14211 | opp_overlap 897705 897696 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT TERM 1105 897705 - 897725 + G 84 -12.7 -3.08173 | opp_overlap 897705, overlap 897696 ATGCGCTTTTATGAA CTTGATGCT GGT AGCATCAAG TTAGATAAAGTTCCT Spy49_0902 896532 - 898247 + | Putative ABC transporter TERM 1106 898261 - 898284 + F 80 -6.8 -4.75308 | opp_overlap 898261 AAAAGATAGAATAAA GTTCGTCTTT TAAC AAAGGTGAAC TTTTTAAGTCTTCCT nox1 898500 - 899870 + | NADH oxidase TERM 1107 899887 - 899911 + T 93 -7.7 -5.54079 | opp_overlap 899887 ATCTGATAGGAAAAA GCCAGAGCAGT TCA GCAGCACTGGC TTTTTTGCTTTTTAA TERM 1108 899911 - 899887 - T 83 -7 -4.80882 | opp_overlap 899887 ATCTGATAGGAAAAA GCCAGAGCAG TTCAG CAGCACTGGC TTTTTTGCTTTTTAA TERM 1109 900027 - 900001 - T 78 -7.5 -4.23723 | gap 1, opp_overlap 900001 900002 900007, overlap 900007 GAATATCAGGCAAAA CA-AAAAGAGAC CGAA GTCTCTTTTGTG ATTAGTTTTTAGCAG TERM 1110 900007 - 900020 + T 76 -6.7 -4.59117 | opp_overlap 900007 900001, overlap 900002 900001 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT TERM 1111 900020 - 900007 - T 87 -6.7 -5.48213 | opp_overlap 900002 900001 900007, overlap 900001 CAGGCAAAACAAAAA GAGAC CGAA GTCTC TTTTGTGATTAGTTT ldh 901012 - 900029 - | L-lactate dehydrogenase TERM 1112 900098 - 900111 + g 72 -3.1 -5.09426 | AGCTTTCAATTGATT TGCAG AGGC TTGCA TTTTTTGCAATTCAG gyrA 901203 - 903689 + | DNA gyrase subunit A TERM 1113 904250 - 904232 - g 85 -2.5 -5.76237 | opp_overlap 904242, overlap 904236 904242 CAGATAAAGAAAAAA TTTACGA ATACA TCATAAA AGATGTTTTCACGGT Spy49_0906 903709 - 904458 + | Sortase Spy49_0907 904538 - 904954 + | Lactoylglutathione lyase TERM 1114 905233 - 905252 + F 76 -6.6 -4.48175 | CGTATTAATGTTTTT TTATCTAT TGTG ATAGATAA TTTTACTTCAATTTT TERM 1115 905542 - 905523 - f 79 -3.6 -5.41746 | AACTTGCTAAAAAAA TGTTTAAC GATA GTAAAACA CCGTCTAAAAGAAAG Spy49_0908 905603 - 906007 + | hypothetical protein TERM 1116 906058 - 906033 - T 79 -9.1 -3.41292 | opp_overlap 906039, overlap 906039 ACCTTTAAGATAAGA CAAAAAGTGCC ATTA GGCACTTTTTT AATCTTCTGTTGGAA TERM 1117 906052 - 906039 - T 90 -8.1 -5.18995 | opp_overlap 906039, overlap 906033 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG TERM 1118 906039 - 906052 + T 90 -8.1 -5.30189 | opp_overlap 906039 906033 AAGATAAGACAAAAA GTGCC ATTA GGCAC TTTTTTAATCTTCTG Spy49_0909c 906968 - 906057 - | hypothetical protein TERM 1119 906149 - 906167 + g 73 -2.4 -5.1925 | CCCCATCAATCCTGG TAAGTGGT AAT ATCGCTTG TTTTTTAGCTTGTGG hlyIII 907735 - 907220 - | Putative hemolysin III TERM 1120 907663 - 907679 + g 77 -8.7 -3.85704 | overlap 907665 TAGCAAATGCTCCGA TAGCGTG TGT CACGCTG TTTGCTACTTCCTCA TERM 1121 907665 - 907677 + g 74 -9.1 -3.51124 | overlap 907663 GCAAATGCTCCGATA GCGTG TGT CACGC TGTTTGCTACTTCCT Spy49_0911c 908172 - 907732 - | hypothetical protein Spy49_0912 908391 - 909239 + | GTP-binding protein TERM 1122 909688 - 909676 - g 75 -7.7 -4.01419 | TATGAAGCAACCAAA CTAGC TAT GCTAG AAGCCATTAAACAGT rnh 909229 - 910020 + | Ribonuclease HII TERM 1123 910025 - 910041 + F 95 -5.9 -6.28401 | opp_overlap 910025 CTAATCCTTAAAAAG TTCTGTT TTT AGCAGAA TTTTTTTCTTTTTTA smf 910085 - 910921 + | Putative DNA processing protein TERM 1124 911317 - 911304 - g 76 -2.3 -5.41746 | overlap 911291 AATTCTTTAAAAAAA GAAGC CAAA GCTGC TAAAAAAGTTTATTT TERM 1125 911828 - 911802 - g 76 -11 -2.64454 | overlap 911801 911799 CTAACAAATGAAGAT TTTCTTGTCAGC AAG GTTGACAAGAAA GAGCGACGTCGTAAT topA 911028 - 913157 + | Putative DNA topoisomerase I TERM 1126 913192 - 913163 - T 100 -6.6 -6.01187 | opp_overlap 913163 AATTAAATAAAAAAA GAATTGGAAC TCCTTGTCTT GTTCCAATTC TTTTTTTTATTTACA TERM 1127 913163 - 913192 + T 100 -6.6 -6.23545 | opp_overlap 913163 AATTAAATAAAAAAA GAATTGGAAC TCCTTGTCTT GTTCCAATTC TTTTTTTTATTTACA Spy49_0916c 913715 - 913233 - | Transcriptional regulator, LysR family Spy49_0917c 913844 - 913722 - | Transcriptional regulator, LysR family Spy49_0918 914130 - 914696 + | Regulatory protein Spy49_0919 914711 - 915703 + | D-lactate dehydrogenase TERM 1128 915717 - 915760 + F 100 -14.3 -5.17576 | AACAACTGATTTGAC GTCCATTATAAAGGAAT AATTTTAAAA ATTCCTTTATAATGGAC TTTTTTGCATTAGTC Spy49_0920 915808 - 916473 + | Putative acid tolerance SatD-like protein Spy49_0921 916466 - 917182 + | hypothetical protein TERM 1129 917201 - 917227 + F 100 -13.2 -5.52807 | opp_overlap 917205 AAAAGGGTTCCCGTA GAAAGAGGCTAA CGC TTAGTCTCTTTC TTTTTCTTTCTTCTT gid 917333 - 918679 + | Gid-like Protein TERM 1130 918693 - 918722 + F 76 -3.6 -5.30155 | opp_overlap 918682, overlap 918694 AACACTAAAAAAGAG TTCCTTTTCAGT TGAGTT GCTGAAGAGGAC TTTTTTACTTGCTGA TERM 1131 918694 - 918721 + F 70 -7.1 -3.77008 | opp_overlap 918682, overlap 918693 ACACTAAAAAAGAGT TCCTTTTCAGT TGAGTT GCTGAAGAGGA CTTTTTTACTTGCTG Spy49_0923 918856 - 920238 + | Oxaloacetate decarboxylase alpha chain Spy49_0924 920281 - 920595 + | hypothetical protein TERM 1132 920743 - 920713 - g 100 -14.1 -4.57482 | CTACTGAGAAAGAAA TGAATGCCAACGC TGCTG GCGGTGGCATTCA GGTAAAGGCTCCAAT Spy49_0925 920595 - 920945 + | Biotin carboxyl carrier protein of oxaloacetate decarboxylase Spy49_0926 920955 - 922085 + | Oxaloacetate decarboxylase beta chain TERM 1133 922130 - 922152 + T 84 -6.3 -5.14563 | AATAAATCATTATCA GGAGTTGGA AGCAA TCTAGCTCC TTTTTTAGTAGAAAG citG 923170 - 922286 - | Probable 2-(5-triphosphoribosyl)-3- dephosphocoenzyme-A synthase Spy49_0928c 923858 - 923163 - | Transcriptional regulator, GntR family TERM 1134 923811 - 923826 + g 82 -6.2 -4.87133 | TTTCAAAGGGGTATT TCTTGA TAGG TCAAGA TTTTGTTTAACGGCT TERM 1135 923976 - 923943 - R 71 -5.4 -4.58663 | opp_overlap 923943 ATGAGTTCTGAAAAA TTAAAGCCATGCTC ACAAAA GGACATGACTTTAA TCATCTCATAAGGAA Spy49_0929c 925422 - 924016 - | Citrate transporter TERM 1136 925629 - 925678 + H 90 -11.1 -3.87869 | AGTATCTTGATCTCA GTTTTTCAACAGTTACCTA AAAACAAAATAA AAGGTAACTGTTGAAAAAC TTTATGAAACATTGA Spy49_0930 925799 - 926122 + | hypothetical protein Spy49_0933 926611 - 927732 + | Oxaloacetate decarboxylase beta chain citD 927920 - 928228 + | Putative citrate lyase, gamma subunit TERM 1137 928949 - 928937 - g 78 -4.1 -5.33131 | CAACAAAAAAAGAAA TTGAC CAT GCCAA ACAAGTCATCTGGGC TERM 1138 929031 - 929018 - g 74 -5.3 -4.81249 | CCTTAAATGGAAAAA TGGTT GATA AACCA ATCGTTGAACGTGCA citE 928216 - 929103 + | Citrate lyase beta chain citF 929106 - 930638 + | Citrate lyase alpha chain citX 930535 - 931209 + | Probable apo-citrate lyase phosphoribosyl- dephospho-CoA transferase TERM 1139 931246 - 931234 - g 80 -7.7 -4.33105 | overlap 931236 CAATTATGACGAAAA TCCGT ATA ACGGA AACAGTTTTACGTGA oadA 931224 - 932618 + | Oxaloacetate decarboxylase alpha chain TERM 1140 932718 - 932692 - T 100 -10.3 -4.93316 | opp_overlap 932692 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTTATCTTAGT TERM 1141 932692 - 932718 + T 100 -8.1 -5.82172 | opp_overlap 932692 GAACAATACCAAAAA CCTACCTGATT TTGAT AATCAGATAGG TTTTTTTATCTTAGT citC 933781 - 932729 - | Citrate (pro-3S)-lyase ligase Spy49_0942c 934351 - 933968 - | hypothetical protein TERM 1142 935012 - 935051 + r 100 -16.9 -3.49668 | opp_overlap 935006 TTGAAGCTATTTTTA CCTTTAATGTTACATAA AAACAA TTATGTAACATTAAAGG TTATCTAAAGCATTT Spy49_0943c 936115 - 935045 - | Tyrosine recombinase xerC TERM 1143 935560 - 935520 - G 74 -9.2 -3.47383 | gap 1, overlap 935518 AGTAGAGCAATAATA GCCAAATC-CCTCTCCTTA TTTT TACGGAAAGAAGATTTGGC ACGATTAGACAATTT TERM 1144 935656 - 935670 + g 91 -7.8 -5.29208 | overlap 935661 GCTTAATATTTTCCG CTCTGG AAG CCAGGG TTTCTTTTTTCTTTT TERM 1145 935661 - 935674 + g 100 -3.1 -6.07374 | overlap 935656 ATATTTTCCGCTCTG GAAGC CAGG GTTTC TTTTTTCTTTTTTGT TERM 1146 936268 - 936279 + H 82 -4.4 -5.42259 | opp_overlap 936262 TCGGAAAGATGTCAC GAGA CAAA TCTC TTTTTTTACAGATAC TERM 1147 936572 - 936549 - H 75 -9.8 -2.62263 | overlap 936564 ATTTTTTTGATACTA TTAGTAAAGT TATA ACTTTACTAA AGGAGCTACCAAATG Spy49_0944 936585 - 937283 + | Putative repressor protein TERM 1148 937373 - 937402 + T 100 -10.9 -4.9251 | opp_overlap 937378, overlap 937378 AATGAATTTCACATC AAAAAGAGACGAA AATT TTCGTCTCTTTTA TTTTCGTTTTTTCTT TERM 1149 937378 - 937397 + T 100 -10.8 -5.24291 | opp_overlap 937378, overlap 937373 ATTTCACATCAAAAA GAGACGAA AATT TTCGTCTC TTTTATTTTCGTTTT TERM 1150 937397 - 937378 - T 100 -10.8 -4.80882 | opp_overlap 937373 937378 ATTTCACATCAAAAA GAGACGAA AATT TTCGTCTC TTTTATTTTCGTTTT ffh 938962 - 937400 - | Signal recognition particle, subunit Ffh SRP54 Spy49_0946c 939318 - 938977 - | putative DNA-binding protein TERM 1151 939403 - 939384 - R 75 -5 -5.00616 | opp_overlap 939385 939388, overlap 939385 TGTTCGTGTAAAAAA GGAAGTCA TAAA TGACTTCT TTACTAATTATTTTC TERM 1152 939385 - 939402 + r 82 -8.5 -3.91642 | opp_overlap 939385 939384, overlap 939388 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT TERM 1153 939402 - 939385 - R 77 -8.5 -3.60048 | opp_overlap 939385 939388, overlap 939384 GTTCGTGTAAAAAAG GAAGTCA TAAA TGACTTC TTTACTAATTATTTT Spy49_0947c 940105 - 939407 - | Transcriptional regulator, GntR family Spy49_0948c 941477 - 940188 - | hypothetical protein TERM 1154 940600 - 940611 + g 72 -4.4 -4.83169 | AATTCTGGCGCATAG CCAA TAAA TTGG TTTTTCTCAAACAAT TERM 1155 941007 - 940993 - G 70 -8.6 -3.28712 | opp_overlap 940982, overlap 941000 TGCTGCTTTGCATAA GCGAAA GCT TTTCGC AAAAGACGATTGTTT guaA 941789 - 943351 + | GMP synthase - glutamine-hydrolyzing TERM 1156 943407 - 943352 - T 100 -23.2 -3.68222 | gap 1, opp_overlap 943354 943357 943361, overlap 943354 943357 943361 943369 GTTGAATGGGAATAA CAGAATAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTATTCTT TAACTGTTTTCGTAT TERM 1157 943354 - 943405 + T 100 -25.8 -3.85786 | gap 1, opp_overlap 943352 943354 943357 943361 943369, overlap 943357 943361 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1158 943405 - 943354 - T 100 -25.8 -3.42069 | gap 1, opp_overlap 943354 943357 943361, overlap 943352 943357 943361 943369 TGAATGGGAATAACA GAATAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT TERM 1159 943357 - 943402 + T 100 -21.7 -4.03611 | gap 1, opp_overlap 943357 943354 943352 943361 943369, overlap 943354 943361 ATGGGAATAACAGAA TAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1160 943402 - 943357 - T 100 -21.7 -3.8372 | gap 1, opp_overlap 943354 943357 943361, overlap 943354 943352 943361 943369 ATGGGAATAACAGAA TAAACATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATGTTTA TTCTTTAACTGTTTT TERM 1161 943398 - 943361 - T 100 -18.1 -4.51763 | gap 1, opp_overlap 943357 943354 943361, overlap 943357 943354 943352 943369 GAATAACAGAATAAA CATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1162 943361 - 943398 + T 100 -18.1 -4.58585 | gap 1, opp_overlap 943361 943357 943354 943352 943369, overlap 943357 943354 GAATAACAGAATAAA CATTAAAAGACTCGCTCA TTT TG-GCGAGTCTTTTAATG TTTATTCTTTAACTG TERM 1163 943390 - 943369 - T 93 -9.5 -4.55446 | gap 1, opp_overlap 943361 943357 943354, overlap 943361 943357 943354 943352 GAATAAACATTAAAA GACTCGCTCA TTT TG-GCGAGTC TTTTAATGTTTATTC murM2 944604 - 943393 - | Putative antimicrobial resistance factor TERM 1164 944850 - 944863 + r 82 -5.3 -5.30155 | opp_overlap 944850, overlap 944843 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA TERM 1165 944863 - 944850 - R 93 -5.3 -6.0427 | opp_overlap 944843 944850 ATTAGATAAAAAAAA GATGT AGTC ACATC TTTTTTGGTTGGTGA Spy49_0952c 946524 - 944959 - | ABC transporter, ATP-binding protein TERM 1166 946532 - 946545 + r 81 -8.1 -4.17537 | opp_overlap 946532 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA TERM 1167 946545 - 946532 - R 90 -8.1 -5.14965 | opp_overlap 946532 ACTGTCATCAAAAAA GCCGT CAAA ACGGC TTTATAGTTATTTCA Spy49_0953c 947194 - 946637 - | hypothetical protein pdxK 948038 - 947172 - | Putative pyridoxal kinase TERM 1168 948494 - 948506 + G 73 -7.7 -3.93288 | opp_overlap 948493 CTAGAAGAACTAAGG GAAGC TTT GCTTC TTTACTTAGCTGAAA TERM 1169 949013 - 949029 + G 71 -3.7 -5.00616 | overlap 949016 GCTCTAGTTTTACCG TCAGGTT TAA AACCTCA TTTTTTAACCCAAAA Spy49_0955 948128 - 949396 + | Putative transcriptional regulator/aminotransferase TERM 1170 949791 - 949818 + T 100 -14.4 -3.62591 | opp_overlap 949791 ATAGTAGCAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC TERM 1171 949818 - 949791 - T 100 -14.4 -5.56568 | opp_overlap 949791 ATAGTAGCAAAAAAA TACCTAACAGAT TTTT ATCTGTTAGGTA TTTAAACCTTATCCC Spy49_0957c 950223 - 949867 - | Putative anaerobic ribonucleotide reductase TERM 1172 950391 - 950371 - R 100 -12.7 -5.81622 | ATAAAATTAAAAAAA GGATTGAGA ATA TCTCAATCC AAGGGGCATTCTTAA TERM 1173 950500 - 950485 - R 76 -7.6 -4.07568 | CTCCCCTGCGCAAAA GTGACT TTGC AGTCAC AATCGACTCATCGCA Spy49_0958c 952122 - 950545 - | Cardiolipin synthetase TERM 1174 952180 - 952200 + r 100 -12.7 -4.72272 | opp_overlap 952174 952173 GGAAGAAAGGAGCGC TTGCTCGAA TTA TTCGAGCAA TTTTTCCTAAAAGAG fhs1 953877 - 952207 - | Putative formate-tetrahydrofolate ligase lplA 955024 - 954005 - | Lipoate-protein ligase A TERM 1175 954077 - 954097 + g 80 -6.1 -4.76892 | opp_overlap 954066 TAAATCAATTGCATT GAGGGTAGC TAA GATATCCTC TTTTTCCATTCGTGT TERM 1176 954575 - 954565 - G 73 -6.8 -4.29738 | CCACATCTAGCAAAA GGGA ATA TCCC CCATAAACACGGCCA Spy49_0961c 955952 - 955071 - | hypothetical protein TERM 1177 955574 - 955556 - G 72 -4.6 -4.66833 | overlap 955557 CTTGAATGTGAAAAA TGTTATGA GGA TCATAACC AGCCATCCAAAAAGC Spy49_0962c 956757 - 955945 - | hypothetical protein TERM 1178 956641 - 956615 - G 71 -7.3 -3.89215 | gap 1, opp_overlap 956640, overlap 956618 TTTGATAAAGGCAAA GCAGGGCGCT GGTTAATG AGCGCCC-GC CACAAGTCTTGTCGC Spy49_0963c 957082 - 956750 - | Glycine cleavage system H protein Spy49_0964c 958122 - 957124 - | hypothetical protein Spy49_0965c 959318 - 958119 - | Putative trimethylamine dehydrogenase Spy49_0966c 960151 - 959315 - | Lipoate-protein ligase A TERM 1179 960304 - 960286 - H 85 -8.8 -4.20368 | opp_overlap 960283 960286 960286, overlap 960291 CCATCTTAATACAAA CGCAAGAC AAT GTCTGGCG TCATTATCTTCCGTT TERM 1180 960731 - 960749 + G 82 -3.8 -5.40072 | overlap 960734 960735 CCGAAAATCTCATCT GCATCTGA TTA TCAGGTTC TTTTTTTGAAAAAAA dpfB 960347 - 961039 + | Phosphopantothenoylcysteine synthetase dfp 961032 - 961577 + | Phosphopantothenoylcysteine decarboxylase TERM 1181 962051 - 962061 + G 78 -4 -5.20328 | ATACTATATTTGTAT TATC TGG GATA TTTATTTTTTTCGCG Spy49_0969 961636 - 962205 + | hypothetical protein TERM 1182 962219 - 962251 + F 89 -8.7 -4.42851 | opp_overlap 962219 962222, overlap 962248 AATTAGCTTTCACAA TAACCGAGTTTTT CTCTTTT AAAAACTTGGTTA TTTTAACTTTCTTAC TERM 1183 963587 - 963560 - g 70 -2.7 -5.07486 | opp_overlap 963584 GAGTTTGAAGAAAAA CATAACCACAC CTATAT GTTTGGTTTTG AAGAAAGCTTCGGAT pgmA 962381 - 964099 + | Phosphoglucomutase TERM 1184 964165 - 964143 - T 100 -11.4 -5.00412 | opp_overlap 964143 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1185 964143 - 964165 + T 100 -9.2 -4.88711 | opp_overlap 964143 AAAGACAAGCAAAAA GAACTAAGCC GCT GACTTAGTTC TTTTTAGTCTATTCT TERM 1186 964276 - 964235 - T 95 -8.8 -5.055 | opp_overlap 964235 GTAAGTCCCAAAAAA GCACCCTTAAAGCTAGAC CTAACT ATCTTGCTTTAGGAGTGC TGTTAAACCTCACTA Spy49_0971c 965268 - 964312 - | Putative sugar ABC transporter TERM 1187 964850 - 964824 - G 70 -3.1 -4.87803 | overlap 964833 TATTTTTAAAGAAAA TATCACCAATC ACAGG AATTTGTGATA AACCTGGGAAATCAA Spy49_0972c 966334 - 965270 - | Putative sugar ABC transporter TERM 1188 966166 - 966151 - G 71 -6.2 -4.2679 | CAAGCGCTATTAAAA TCAATG GCCC CATTGA ACGGAATATTTCTCC Spy49_0973c 967859 - 966327 - | Putative sugar ABC transporter TERM 1189 967931 - 967951 + r 90 -11.3 -3.53012 | opp_overlap 967927 967926, overlap 967885 CTATCACAAACTTTA CTGAGATAA AAA TTATCTCAG TTTAAAAAGAGCGAC TERM 1190 967960 - 967981 + r 75 -7.2 -4.09963 | opp_overlap 967960 967962 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1191 967981 - 967960 - R 80 -7.2 -4.62336 | opp_overlap 967960, overlap 967962 ATCTCAGTTTAAAAA GAGCGACC GACAAA GGTCGCGC TTCTTGTTCTTAAAC TERM 1192 967979 - 967962 - R 79 -8.4 -3.92746 | opp_overlap 967960, overlap 967960 CTCAGTTTAAAAAGA GCGACC GACAAA GGTCGC GCTTCTTGTTCTTAA Spy49_0974c 969050 - 967998 - | Putative lipoprotein TERM 1193 968132 - 968144 + g 82 -4.1 -5.39721 | CATAGACAGTTGTTT TTCCT CCA GGGAA TTTTTTATCTGCTAC cdd 969533 - 969144 - | Cytidine deaminase TERM 1194 970147 - 970195 + r 100 -11.3 -4.14859 | opp_overlap 970147 970152 CTCTTTACTATTTAA GCAAACCTAATTAAAATGAGCAA TTG TTGATTATTTAAATTAGGCTTGC TTTATACTTCTTAAT TERM 1195 970195 - 970147 - R 84 -11.3 -3.09516 | opp_overlap 970147, overlap 970152 CTCTTTACTATTTAA GCAAACCTAATTAAAATGAGCAA TTG TTGATTATTTAAATTAGGCTTGC TTTATACTTCTTAAT Spy49_0976c 970779 - 970186 - | hypothetical protein TERM 1196 970280 - 970293 + g 84 -2.3 -5.81412 | overlap 970277 ATTTTTGCTTTAGCG CTAGG AGCT CCTTG TTTTTTTTGAATCAC coaA 971047 - 971967 + | Pantothenate kinase TERM 1197 972253 - 972228 - g 84 -6.8 -4.97405 | overlap 972243 972244 ATTCACAAAAACAAA GCAAGCCGCG ATAAAG CACGCCTTGC TGCAAAACTTGGCTA prsT 972036 - 972269 + | SSU ribosomal protein S20p TERM 1198 972298 - 972287 - T 72 -5.8 -4.45151 | opp_overlap 972287 AATATCCAATGAAAA CTCC AACT GGAG TTTTTTTATACGGTA TERM 1199 972287 - 972298 + T 88 -5.8 -5.626 | opp_overlap 972287 AATATCCAATGAAAA CTCC AACT GGAG TTTTTTTATACGGTA TERM 1200 972396 - 972353 - T 72 -4.7 -4.70659 | gap 1, opp_overlap 972345 972364, overlap 972356 972358 972364 GTTGACAGTTAAAAA TAACTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTTAGCTTA TAGTTTGACTTCAAA TERM 1201 972392 - 972356 - T 71 -5.3 -4.46215 | gap 2, opp_overlap 972364, overlap 972353 972358 972364 GACAGTTAAAAATAA CTTTAAAAGGGCTGACC TTATT GGTC-GCCCTTTTT-AG CTTATAGTTTGACTT TERM 1202 972385 - 972364 - T 81 -8 -4.26634 | gap 1, opp_overlap 972364, overlap 972358 972356 972353 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAGT TERM 1203 972364 - 972385 + T 86 -8 -4.78752 | gap 1, opp_overlap 972364 972358 972356 972353 AAAATAACTTTAAAA GGGCTGACC TTATT GGTC-GCCC TTTTTAGCTTATAGT ciaH 973704 - 972394 - | Putative histidine kinase protein ciaR 974371 - 973697 - | Transcriptional regulatory protein ciaR TERM 1204 974704 - 974682 - R 80 -4.8 -5.31275 | GCTCACTACAAAAAA GAGCTGGAAA GTC CCCCCAACTC TTTTGCTTATGGTCT pepN 977255 - 974718 - | Putative lysyl-aminopeptidase TERM 1205 975890 - 975870 - G 89 -5.5 -5.4505 | opp_overlap 975870 TTTTCCAATAAAAAA TTGTTTTTG ACT CAAAATCAA TTGATCGTTTTCAAG TERM 1206 977297 - 977316 + r 74 -9.4 -3.0218 | opp_overlap 977295 977287 977297, overlap 977299 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT TERM 1207 977316 - 977297 - R 77 -9.4 -3.26546 | opp_overlap 977297 977299, overlap 977295 977287 CATAATAGATCAACA GATGATAC CTAA GTATCATC TCTGTCTACATATAT TERM 1208 977424 - 977414 - R 74 -6.8 -4.386 | opp_overlap 977416 977417 977419, overlap 977417 CAATTTCGTATAAAA CCAG GGA CTGG CAAGCTGTTTCCCAG phoU 978113 - 977460 - | Putative phosphate uptake regulatory protein pstB 978940 - 978182 - | Phosphate transport ATP-binding protein pstB pstB2 979756 - 978953 - | Phosphate transport ATP-binding protein pstB2 pstA 980659 - 979772 - | Phosphate transport system permease protein pstA pstC 981584 - 980649 - | Phosphate transport system permease protein pstC TERM 1209 981264 - 981254 - G 74 -4.6 -4.87665 | TTTCAGTCATAAAAA CGGC TGC GCCA ATGGCAAATGGGGTG pstS 982461 - 981595 - | Phosphate ABC transporter, periplasmic phosphate-binding protein pstS TERM 1210 982545 - 982557 + r 89 -6.3 -5.65927 | TAACATATCTACCTA TGCTT TGA AAGCA TTTTTTCTTTAAATA Spy49_0988c 983910 - 982600 - | Putative nucleolar protein TERM 1211 983648 - 983627 - G 80 -10.1 -3.69618 | opp_overlap 983626, overlap 983625 GCCAAGTCTAAAACA CGACTCCCC TTTT GAGGAGCCG CTACTTGTGCCACCA Spy49_0989c 984701 - 983913 - | Myo-inositol-1(or 4)-monophosphatase Spy49_0990c 984969 - 984691 - | hypothetical protein TERM 1212 984933 - 984902 - G 100 -12.4 -5.09225 | opp_overlap 984900 ACTTTATTCAAAAAA TGAAGCACTGAGGA TATT TCTTCAGTGCTCCA ACTTAAGTCAAGTGG Spy49_0991c 985375 - 984971 - | Regulatory protein spx Spy49_0992c 986350 - 985418 - | Riboflavin kinase / FMN adenylyltransferase TERM 1213 985490 - 985504 + g 72 -4.3 -4.72846 | TCTATCAGTCAAATC TTCGA TTCCC TCGAA TTTTTCCATGTCTCG truB 987263 - 986340 - | tRNA pseudouridine 55 synthase TERM 1214 987217 - 987233 + g 80 -2.2 -5.54192 | opp_overlap 987208, overlap 987209 987208 987208 AAAACTGCGTCATGA GAGGTC ATGCC GGCTTC TTTTTTTAAATTAAT Spy49_0994c 988719 - 987379 - | hypothetical protein TERM 1215 988785 - 988763 - R 74 -3.4 -5.23316 | TATTATAGCAAAAAA GCTCAGGA AGTTAAG TCCCAAGC TGTCATAGATAAGAA Spy49_0995c 989772 - 988816 - | hypothetical protein TERM 1216 989406 - 989395 - G 73 -2.2 -5.24531 | AGTCCCTACAAAAAA GAGC ATAA ACTC ATTCGATAAAATAGG TERM 1217 989738 - 989721 - G 73 -5.5 -4.4959 | GGTAAGCAATTAAAA TGGCAAC AATG GTAGCCA AGGTCATTTTTAATG Spy49_0996c 990379 - 989783 - | hypothetical protein Spy49_0997c 993107 - 990471 - | Putative ABC transporter, permease protein TERM 1218 991703 - 991713 + g 73 -5.4 -4.62471 | ACTGAGCTGCATTGA GGAA TAA TTCC TTTTTGACAATTAAG TERM 1219 993083 - 993094 + g 76 -4.4 -5.02323 | opp_overlap 993083 TAGCTCTCAAAATAT CCTT CCAT AAGG TTTTCTTTATCATAC Spy49_0998c 993823 - 993122 - | Putative ABC transporter Spy49_0999 993941 - 994483 + | Transcriptional regulator, TetR family TERM 1220 994625 - 994605 - T 100 -9.8 -5.85737 | opp_overlap 994605 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCA TERM 1221 994605 - 994625 + T 81 -9.8 -3.52111 | opp_overlap 994605 ACAGCAACAAAAAAA GTTTGAGG TGGGC CCTCAAAC TTATAATCCTTTTCA Spy49_1000c 995267 - 994638 - | Putative transcriptional regulator TERM 1222 995387 - 995368 - R 100 -12.2 -4.8543 | TAACCGTGACAAAAA GAGCTGGT AAAT ACCAGCTC AAACTTATCACCACT Spy49_1001c 995918 - 995430 - | hypothetical protein Spy49_1002c 996129 - 995929 - | hypothetical protein Spy49_1003c 996709 - 996170 - | hypothetical protein Spy49_1004c 996910 - 996722 - | hypothetical protein Spy49_1005c 997508 - 996921 - | hypothetical protein Spy49_1006c 997817 - 997569 - | hypothetical protein TERM 1223 998137 - 998171 + r 100 -13.1 -6.04419 | opp_overlap 998137 AGAAATCTAAAAAAA TGAGCTTCCTACT CACTTATAT AGTAGGAAGCTCA TTTTTTTCTTATTTT TERM 1224 998171 - 998137 - R 100 -13.1 -5.59564 | opp_overlap 998137 AGAAATCTAAAAAAA TGAGCTTCCTACT CACTTATAT AGTAGGAAGCTCA TTTTTTTCTTATTTT pcrA 1000498 - 998180 - | Putative ATP-dependent DNA helicase TERM 1225 1001308 - 1001319 + G 79 -3.6 -5.44119 | AGCGCTCTTTTGGAT GTGG GTTG CCGC TTTTTTTGGAATGGC Spy49_1008 1001027 - 1002349 + | Putative amino acid symporter Spy49_1009 1002469 - 1003704 + | Putative cation efflux system protein TERM 1226 1003829 - 1003796 - T 93 -8.3 -5.54264 | opp_overlap 1003796 AAATAGTTAAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC TERM 1227 1003796 - 1003829 + T 86 -6.1 -5.42259 | opp_overlap 1003796 AAATAGTTAAAAAAA TCCCTACAATTTGTT TTTA AACAGATCATAGGGA TTTTTTTAAGAATAC cfa 1004847 - 1004074 - | CAMP factor TERM 1228 1005142 - 1005130 - R 86 -2.7 -5.80364 | opp_overlap 1005131, overlap 1005131 1005141 AGTTTAATAAAAAAA CCTTA AAC TAAGA TTTTTATTAAATCAT TERM 1229 1005179 - 1005157 - R 80 -10.6 -2.96873 | overlap 1005154 ATTTTTATTAAATCA TCTAGCTGAC TTT GTCTGCTAGA TCTCACCTGTTAAAC TERM 1230 1005202 - 1005213 + r 77 -5.8 -4.71482 | opp_overlap 1005202 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT TERM 1231 1005213 - 1005202 - R 93 -5.8 -5.95539 | opp_overlap 1005202 TGTTAAACAAAAAAA GGAC AAGT GTCC TTTTTAAGATTTAAT Spy49_1011c 1006053 - 1005217 - | Putative amino acid ABC transporter, periplasmic amino acid-binding protein TERM 1232 1005621 - 1005647 + g 91 -6 -5.40072 | overlap 1005612 1005623 ACACTTTATGTTTCA TATCTGATATTG TTT TAATATCAGATC TTTTTTTGACAACAA TERM 1233 1005623 - 1005645 + g 85 -8.6 -4.34482 | overlap 1005621 ACTTTATGTTTCATA TCTGATATTG TTT TAATATCAGA TCTTTTTTTGACAAC Spy49_1012c 1006698 - 1006069 - | Amino acid ABC transporter, ATP-binding protein TERM 1234 1006558 - 1006525 - G 71 -6.7 -4.13767 | TTCGCCATTGTAAAA GACTTGACCTGAATC AATA GATTCAAGACCAGCC AACATCCGTAAGAGT TERM 1235 1006643 - 1006655 + g 72 -3.4 -5.00884 | opp_overlap 1006643 1006646 1006653 ACGGTTAGATTAAAG CCAT CAAAA ATGG TTTTTTGACCAAACT Spy49_1013c 1007349 - 1006708 - | Amino acid ABC transporter, permease protein TERM 1236 1007447 - 1007425 - R 70 -4.1 -4.82901 | opp_overlap 1007425 1007426 1007430, overlap 1007427 1007430 GTTTTTTTATAAAAA TACAACCAG ATCAG CTGGTTGCG TATTATTATTAGATT TERM 1237 1007445 - 1007427 - R 82 -8.9 -4.03995 | opp_overlap 1007426 1007425 1007430, overlap 1007425 1007430 TTTTTTATAAAAATA CAACCAG ATCAG CTGGTTG CGTATTATTATTAGA Spy49_1014c 1007791 - 1007456 - | PhnA protein TERM 1238 1007946 - 1007968 + r 78 -10.6 -2.66979 | opp_overlap 1007946, overlap 1007945 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT TERM 1239 1007968 - 1007946 - R 100 -12.8 -5.61881 | opp_overlap 1007946 1007945 TCCTAAAAACAAAAA GCAACCACCT AAC AGATGGTTGC CTTATCCATTATAAT glmS 1009801 - 1007987 - | Glucosamine--fructose-6-phosphate aminotransferase TERM 1240 1009985 - 1009960 - R 100 -9.1 -5.71983 | opp_overlap 1009960 CTAATTATAAAAAAA GTAGAGTAGCC TGAC AACTACTCTAC TTCTACAAATCCAAA sipC 1010534 - 1009977 - | Putative signal peptidase I TERM 1241 1010727 - 1010705 - R 100 -10.7 -5.21709 | opp_overlap 1010705 TTTGATATCAAAAAA GGTTAGAAG CTTGC CTTCTAACC TTTAGGTAAATAGTT TERM 1242 1010705 - 1010727 + r 89 -10.7 -3.67564 | opp_overlap 1010705 TTTGATATCAAAAAA GGTTAGAAG CTTGC CTTCTAACC TTTAGGTAAATAGTT pyk 1012254 - 1010752 - | Putatove pyruvate kinase TERM 1243 1011894 - 1011914 + g 75 -2.5 -5.26316 | overlap 1011895 1011896 GAGTTGATTGAATGC CTTGTGTAG TCG CTACACGGA TTTTTTCTCCAGTGA pfk 1013330 - 1012317 - | 6-phosphofructokinase dnaE 1016520 - 1013410 - | DNA polymerase III alpha subunit Spy49_1020 1016705 - 1017076 + | Transcriptional regulator, GntR family TERM 1244 1017657 - 1017667 + G 73 -5.4 -4.63218 | CATTGAACCTATCCT TGAC GAA GTCA TTTTCTTGAAACAAG Spy49_1021 1017076 - 1017774 + | Putative ABC transporter Spy49_1022 1017784 - 1018569 + | Conserved hypothetical protein, possible permease TERM 1245 1018579 - 1018618 + T 100 -13.3 -5.52909 | opp_overlap 1018579 CAGTAAGCGTTAAGA CTTTCTTTTAAACTATG ACACAC TATAGTTTAAAAGAAAG TTTTTTTCAGTGTTC TERM 1246 1018618 - 1018579 - T 87 -12.6 -3.06737 | opp_overlap 1018579 CAGTAAGCGTTAAGA CTTTCTTTTAAACTAT GACACACT ATAGTTTAAAAGAAAG TTTTTTTCAGTGTTC TERM 1247 1018673 - 1018650 - T 100 -6.8 -5.99154 | gap 1, opp_overlap 1018650 TAGTAAATAAAAAAA CCGTCTTCCAT CAA ATAGAAG-CGG TTTATCCAAATTAAC Spy49_1023c 1019311 - 1018706 - | hypothetical protein TERM 1248 1019047 - 1019037 - G 85 -6.8 -5.04733 | TAATTATAAATAAAA CCTG TTA CAGG GCCAAAGATTAAAAA TERM 1249 1019783 - 1019798 + H 93 -4.7 -5.98675 | opp_overlap 1019783 CATAACTTACTAAAA CCTTG TTACAT CAAGG TTTTTTCTTTTTGTC TERM 1250 1019953 - 1019991 + H 77 -10.5 -2.54013 | gap 1, opp_overlap 1019948 1019958, overlap 1019952 1019951 1019943 AGAATCAAAATAGTA CTA-AATTCTCCATAGCG CATG CGCTATGGGGAATCATAG CTATATCTTGTTTAT TERM 1251 1019985 - 1019958 - H 95 -12.8 -3.88442 | opp_overlap 1019953 1019952 1019951 1019943, overlap 1019948 CAAAATAGTACTAAA TTCTCCATAGCG CATG CGCTATGGGGAA TCATAGCTATATCTT Spy49_1024 1020050 - 1020670 + | hypothetical protein TERM 1252 1020727 - 1020698 - T 100 -13.1 -4.57837 | opp_overlap 1020698 ATATTTTGCTAAAAA GATTGATTTCGAT GTAC ACCGAAATCAATC TTTTTATATCATTTT TERM 1253 1020698 - 1020727 + T 100 -10.9 -5.07941 | opp_overlap 1020698 ATATTTTGCTAAAAA GATTGATTTCGAT GTAC ACCGAAATCAATC TTTTTATATCATTTT TERM 1254 1020844 - 1020874 + T 79 -8.4 -4.06502 | opp_overlap 1020844, overlap 1020847 AAGTCTGAAGTAAAA TCATAAGACAGCAG AAA CTACTGTCTTATAA TTTAGTTTAAGCATG TERM 1255 1020874 - 1020844 - T 100 -12.8 -4.41895 | opp_overlap 1020844 1020847 AAGTCTGAAGTAAAA TCATAAGACAGCAG AAA CTACTGTCTTATAA TTTAGTTTAAGCATG TERM 1256 1020847 - 1020871 + T 77 -10.1 -3.0693 | opp_overlap 1020844, overlap 1020844 TCTGAAGTAAAATCA TAAGACAGCAG AAA CTACTGTCTTA TAATTTAGTTTAAGC glgP 1023191 - 1020927 - | Glycogen phosphorylase TERM 1257 1022252 - 1022274 + g 73 -5.6 -4.56775 | opp_overlap 1022251 1022249 1022252, overlap 1022254 CTTCTGCAAGAATAG TGTGGTTAGT GTA ACCAACCATA TTTTTCACAACAGCT malQ 1024719 - 1023226 - | 4-alpha-glucanotransferase TERM 1258 1024822 - 1024800 - R 82 -4.2 -5.40474 | opp_overlap 1024792 AGTTTCCTAAAAAAA GTAACATTCC TTA AAAATGCTAC TTTTTTTGTTCTTAA malR 1025853 - 1024834 - | Putative maltose operon transcriptional repressor TERM 1259 1024900 - 1024890 - G 78 -4 -5.28166 | TAAAAGGAACAAAAA TAGT CTG ACTA AGATTCTGTTCATTG TERM 1260 1025424 - 1025439 + g 79 -4.8 -5.0133 | opp_overlap 1025409 1025426 TGACAAATGGTAAGT TATTTG TCAT CAAATA TTTTTTGACAGGATC TERM 1261 1026521 - 1026502 - g 79 -8.6 -4.0162 | opp_overlap 1026502 1026501 GGTGCACAGTACAAA GGGAAAAC GTAT GCTTTCCC ATTTGGTATTGAATC malE 1026097 - 1027344 + | Maltose maltodextrin ABC transporter, substrate binding periplasmic protein malE TERM 1262 1027496 - 1027551 + F 95 -13 -3.78775 | opp_overlap 1027516, overlap 1027495 TTTTTGTTTTACTAG TAGCTTAGTGCTACTTAAATTTTTAA CTCT TTAAAAGTTTACGTAACACTTAGCTA TTTCATCCTAACAAG TERM 1263 1028502 - 1028514 + G 79 -4.8 -5.01497 | opp_overlap 1028502 AATCGGCTTGATTAA TGGC TCACT GCCA TTTTTATCTGATCCT malF 1027618 - 1028979 + | Maltose transport system permease protein malF TERM 1264 1029053 - 1029066 + G 71 -6.7 -3.99775 | overlap 1029044 AATCATTTGGCTCTT CCCAA TCGC TTGGG TTATTCTTACTAGCT malG 1028979 - 1029815 + | Maltose transport system permease protein malG TERM 1265 1029832 - 1029858 + F 100 -9.5 -4.7497 | opp_overlap 1029832 TTACAACATACCAAA CCTTCTAAGGG CAAGC CCTTTAGGAGG TTTTTGATAAATAAG TERM 1266 1029957 - 1029946 - f 74 -2.2 -5.4756 | AAGTGCAACAAAAAA GACA TGTT CGTC TGATATACTAGAATT Spy49_1819c 1029996 - 1030982 + | Probable transposase for insertion-like sequence element IS1161 TERM 1267 1031242 - 1031185 - f 100 -13.8 -4.88918 | opp_overlap 1031190, overlap 1031190 1031229 1031234 TCAGCGTAAATAAAA CAAAAGCTCTATAATCTCTTGAATGG GTAAAT CCACTGTAGAGATTATAGAGCTTTTT GAATATCAAAAAAGT TERM 1268 1031237 - 1031190 - f 100 -13.7 -5.34857 | opp_overlap 1031190, overlap 1031185 1031229 1031234 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGG GTAAAT CCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA TERM 1269 1031190 - 1031237 + F 100 -12.2 -4.70659 | opp_overlap 1031185 1031190 1031229 1031234 GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGGG TAAA TCCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA Spy49_1032 1031207 - 1031431 + | transposase Spy49_1033c 1032479 - 1031496 - | Putative esterase dltD 1033760 - 1032510 - | Protein dltD precursor TERM 1270 1033708 - 1033694 - G 72 -3.6 -5.1166 | TAGGAAAACTAAAAA TAGTAA TCA CTACTA AAACAAAGGCAATAA dltC 1033992 - 1033753 - | D-alanine--poly(phosphoribitol) ligase subunit 2 dltB 1035266 - 1034010 - | Protein dltB TERM 1271 1035142 - 1035153 + g 70 -3.6 -4.87803 | overlap 1035137 ACCAAGGTTTCATAA GTGC TTAA GCGC TTTTGTTTAAAAATC dltA 1036801 - 1035263 - | D-alanine--poly(phosphoribitol) ligase subunit 1 Spy49_1038c 1036956 - 1036813 - | hypothetical protein uvrB 1039210 - 1037219 - | Excinuclease ABC (Subunit B), helicase subunit of the DNA excision repair complex TERM 1272 1037864 - 1037876 + g 75 -10.5 -2.92267 | overlap 1037862 1037858 GAACGTCCGTTCATC GCGCG CTA CGCGC TGGTTAATTTCTCCC TERM 1273 1038213 - 1038201 - G 87 -6.3 -5.33848 | overlap 1038203 ATCATAATTAAAAAA TCTTC TGG GAAGA AATCTAACAAGGTAT TERM 1274 1039307 - 1039293 - H 76 -4.3 -5.11937 | opp_overlap 1039293 1039295, overlap 1039295 AATAAGCGTAAAAAA CATGT CATTT ACATG TTATGTTTTATGACA TERM 1275 1039333 - 1039295 - H 71 -6.3 -4.17355 | opp_overlap 1039293 1039295, overlap 1039293 TAAGCGTAAAAAACA TGTCATTTACATGTTAT GTTTT ATGACATATAAATAACA AATTTCTTGCTTAAT TERM 1276 1039869 - 1039858 - g 88 -3 -6.02345 | opp_overlap 1039858 TAACTATAAAAAAAA GTAT GATT ATAC TGTTAAAACATTTGA glnP 1039403 - 1041577 + | Glutamine ABC transporter, glutamine-binding protein/permease protein TERM 1277 1041603 - 1041593 - g 71 -4 -4.96646 | TGACAGAATTAAAAA TTGA TGT TCAA GATTTACACAAATCT TERM 1278 1041981 - 1041958 - g 84 -6.7 -4.84359 | opp_overlap 1041964 GCACTTCTAGAAAAA GTCGGACTT TCTGAT AAGGCCGAC GCCTTCCCAGGAAGT TERM 1279 1041964 - 1041995 + G 73 -8 -3.85698 | opp_overlap 1041958 CTAGAAAAAGTCGGA CTTTCTGATAAGGC CGAC GCCTTCCCAGGAAG TTTATCCGGCGGGCA glnQ 1041577 - 1042317 + | Glutamine transport ATP-binding protein glnQ TERM 1280 1042384 - 1042349 - T 100 -10.6 -5.055 | opp_overlap 1042355, overlap 1042352 1042355 CTAACTTCCAAAAAA TAATAAGGCAAGGAAA CAGG TTTCCTTGCCTTTTTT GGTTACTGTTATTAT TERM 1281 1042381 - 1042352 - T 100 -12.3 -4.62085 | opp_overlap 1042355, overlap 1042349 1042355 ACTTCCAAAAAATAA TAAGGCAAGGAAA CAGG TTTCCTTGCCTTT TTTGGTTACTGTTAT TERM 1282 1042355 - 1042378 + T 100 -14 -5.31059 | opp_overlap 1042355 1042352 1042349 TCCAAAAAATAATAA GGCAAGGAAA CAGG TTTCCTTGCC TTTTTTGGTTACTGT TERM 1283 1042378 - 1042355 - T 100 -14 -4.40692 | opp_overlap 1042355, overlap 1042352 1042349 TCCAAAAAATAATAA GGCAAGGAAA CAGG TTTCCTTGCC TTTTTTGGTTACTGT TERM 1284 1042411 - 1042460 + T 70 -2.4 -5.25803 | gap 1, opp_overlap 1042414 1042416, overlap 1042412 1042414 1042415 TTATTCAAACCAGCA AAATA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCCTATGC TTTTTTATGGGCGTT TERM 1285 1042414 - 1042457 + T 75 -8.5 -3.44801 | gap 1, opp_overlap 1042414 1042416, overlap 1042412 1042411 1042415 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCCTA TGCTTTTTTATGGGC TERM 1286 1042457 - 1042414 - T 74 -6.3 -4.39386 | gap 1, opp_overlap 1042414 1042412 1042411 1042415, overlap 1042416 TTCAAACCAGCAAAA TA-GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCCTA TGCTTTTTTATGGGC TERM 1287 1042415 - 1042455 + T 77 -9.2 -3.28457 | opp_overlap 1042414 1042416, overlap 1042414 1042412 1042411 TCAAACCAGCAAAAT AGGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCCC TATGCTTTTTTATGG TERM 1288 1042454 - 1042416 - T 87 -10.5 -3.79533 | opp_overlap 1042415 1042414 1042412 1042411, overlap 1042414 CAAACCAGCAAAATA GGGATACTCTTATGA CTCTCTCCT TCATAAGAGTGTCCC CTATGCTTTTTTATG Spy49_1042c 1042617 - 1042465 - | hypothetical protein TERM 1289 1042618 - 1042631 + r 74 -2.3 -5.47159 | ATTTTTTTCTGTCAT GCAAG GTCA CTCGC TTTTTCTTTATTGGC Spy49_1043c 1043993 - 1042614 - | Putative PTS system IIC component TERM 1290 1043075 - 1043089 + g 82 -11.4 -3.21593 | opp_overlap 1043074 1043071, overlap 1043072 1043086 GGTATGGTAAATTAG CAGCGC TAT GCGCTG TATTGTAAGCAGCTG Spy49_1044c 1044620 - 1044171 - | hypothetical protein Spy49_1045c 1044952 - 1044617 - | Putative PTS enzyme III Spy49_1046c 1045266 - 1044955 - | Putative PTS system enzyme II Spy49_1047c 1047283 - 1045289 - | Putative transcriptional antiterminator Spy49_1048c 1048483 - 1047389 - | hypothetical protein Spy49_1049c 1049892 - 1048492 - | Beta-glucosidase TERM 1291 1048945 - 1048935 - G 70 -8.2 -3.7212 | opp_overlap 1048934 1048935 1048935 AAATATCTAAGATAA GGGG GTC CCCC TCTTGCTGTGACTTA Spy49_1050 1050117 - 1050812 + | Ribosyl nicotinamide transporter, pnuC-like protein TERM 1292 1050839 - 1050797 - T 91 -5 -5.84381 | opp_overlap 1050807, overlap 1050799 1050807 TTACCAAGAAAAAAA GGTCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAATT TTTCACGTTCTAAGC TERM 1293 1050837 - 1050799 - T 85 -12 -3.03774 | opp_overlap 1050807, overlap 1050797 1050807 ACCAAGAAAAAAAGG TCAAAAAAGGATGAGG GCCTAAG CCTCATCCTTTTTCAA TTTTTCACGTTCTAA TERM 1294 1050829 - 1050807 - T 100 -9.2 -5.16472 | opp_overlap 1050807, overlap 1050799 1050797 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA TERM 1295 1050807 - 1050829 + T 100 -9.2 -4.92239 | opp_overlap 1050799 1050797 1050807 AAAAAGGTCAAAAAA GGATGAGG GCCTAAG CCTCATCC TTTTTCAATTTTTCA Spy49_1051c 1050975 - 1050817 - | hypothetical protein Spy49_1053c 1052357 - 1051044 - | GTP-binding protein Obg TERM 1296 1051443 - 1051454 + g 86 -4.4 -5.4505 | ATCAAACTCGTCATA TTGG GCAG CCAA TTTTTTCTTGAAGGC TERM 1297 1051461 - 1051476 + g 77 -6.2 -4.65078 | GGCAGCCAATTTTTT CTTGAA GGCT TTCAAG TTTTCTTGAGCCTCT TERM 1298 1052408 - 1052397 - H 79 -3.6 -5.44119 | TTTACTTTAAAAAAA CGCC TTTC AGCG TTTCCTTACATTAAT TERM 1299 1052778 - 1052734 - H 71 -8.6 -3.05384 | opp_overlap 1052735 1052736, overlap 1052747 CTCGTCTGGACTGAA CTGCACCCCAAAAGTTAGAC ACAAA ATCTAACGATTGGGGTGCTA TTTTTTTATGAAATT TERM 1300 1052735 - 1052778 + H 93 -7.6 -5.63504 | gap 1, opp_overlap 1052734 1052747, overlap 1052736 TCGTCTGGACTGAAC T-GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGCTA TTTTTTTATGAAATT TERM 1301 1052736 - 1052776 + H 100 -12.7 -4.45201 | opp_overlap 1052734 1052747, overlap 1052735 CGTCTGGACTGAACT GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGC TATTTTTTTATGAAA TERM 1302 1052877 - 1052852 - g 70 -7.7 -3.75665 | overlap 1052853 GGAGAGTCCATTAAA TCCATATCAAA AAAG TTTGATATGGC AGAATCCGATCTCAA TERM 1303 1052876 - 1052853 - g 80 -11.2 -2.85078 | overlap 1052852 GAGAGTCCATTAAAT CCATATCAAA AAAG TTTGATATGG CAGAATCCGATCTCA Spy49_1054 1052786 - 1053181 + | Conserved hypothetical protein, IS861 associated TERM 1304 1054124 - 1054080 - g 100 -13.2 -4.62054 | opp_overlap 1054086, overlap 1054081 1054086 CGAATTAAAGCAAAA CTAAAAGGACTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCAA ACATACTCATACTTT TERM 1305 1054123 - 1054081 - g 100 -14.5 -3.36148 | opp_overlap 1054086, overlap 1054080 1054086 GAATTAAAGCAAAAC TAAAAGGACTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCA AACATACTCATACTT TERM 1306 1054118 - 1054086 - g 100 -12.2 -4.74084 | opp_overlap 1054086, overlap 1054081 1054080 AAAGCAAAACTAAAA GGACTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAAACATACTCA Spy49_1055 1053321 - 1054199 + | Putative transposase, IS861 TERM 1307 1054185 - 1054174 - f 79 -3.6 -5.44119 | TTTACTTTAAAAAAA CGCC TTTC AGCG TTTCCTTACATTAAT TERM 1308 1054555 - 1054511 - f 71 -8.6 -3.05384 | opp_overlap 1054512 1054513, overlap 1054524 CTCGTCTGGACTGAA CTGCACCCCAAAAGTTAGAC ACAAA ATCTAACGATTGGGGTGCTA TTTTTTTATGAAATT TERM 1309 1054512 - 1054555 + F 93 -7.6 -5.63504 | gap 1, opp_overlap 1054511 1054524, overlap 1054513 TCGTCTGGACTGAAC T-GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGCTA TTTTTTTATGAAATT TERM 1310 1054513 - 1054553 + F 100 -12.7 -4.45201 | opp_overlap 1054511 1054524, overlap 1054512 CGTCTGGACTGAACT GCACCCCAAAAGTTAGA CACAAAA TCTAACGATTGGGGTGC TATTTTTTTATGAAA TERM 1311 1054655 - 1054630 - g 70 -7.7 -3.75665 | overlap 1054631 GGAGAGTCCATTAAA TCCATATCAAA AAAG TTTGATATGGC AGAATCCGATCTCAA TERM 1312 1054654 - 1054631 - g 80 -11.2 -2.85078 | overlap 1054630 GAGAGTCCATTAAAT CCATATCAAA AAAG TTTGATATGG CAGAATCCGATCTCA Spy49_1056 1054597 - 1055097 + | Hypothetical t protein TERM 1313 1055903 - 1055859 - g 100 -15.4 -4.62054 | opp_overlap 1055856 1055865, overlap 1055860 1055865 CGAATCAAAGCAAAA CTAAAAGGATTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCAA TAATTATTTGTCCAA TERM 1314 1055902 - 1055860 - g 100 -16.7 -3.36148 | opp_overlap 1055856 1055865, overlap 1055859 1055865 GAATCAAAGCAAAAC TAAAAGGATTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCA ATAATTATTTGTCCA TERM 1315 1055865 - 1055897 + G 89 -12.2 -3.74658 | opp_overlap 1055860 1055859 1055865, overlap 1055856 AAAGCAAAACTAAAA GGATTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT TERM 1316 1055897 - 1055865 - g 100 -14.4 -4.74084 | opp_overlap 1055865 1055856, overlap 1055860 1055859 AAAGCAAAACTAAAA GGATTTAGTCCTGT CCAAT ACAGAACTAAATCC TTTCAATAATTATTT Spy49_1057 1055100 - 1055906 + | Putative transposase, IS861 TERM 1317 1056457 - 1056429 - f 73 -8.7 -3.28173 | opp_overlap 1056432, overlap 1056427 1056430 ATGATAATATCAACA CCCGCCGCCGCAG CTT CTTCGGCAGCAGC AAGGCTTTCCACTTC TERM 1318 1056456 - 1056430 - f 84 -12.2 -2.56181 | opp_overlap 1056432, overlap 1056429 1056427 TGATAATATCAACAC CCGCCGCCGCAG CTT CTTCGGCAGCAG CAAGGCTTTCCACTT Spy49_1059 1057303 - 1058613 + | Putative integral membrane protein TERM 1319 1058757 - 1058740 - f 71 -5.5 -4.56597 | TCTCTGCTGTAAAAA CTCATCC TTGA GGAAGAG CAGTCTGTAAAAATG TERM 1320 1058881 - 1058836 - g 77 -4.8 -4.93316 | gap 1, opp_overlap 1058846, overlap 1058838 1058846 CAAGAATATGAAAAA TATGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-ATG CTCAATTTGAGATAA TERM 1321 1058879 - 1058838 - g 73 -7.4 -4.06487 | gap 1, opp_overlap 1058846, overlap 1058836 1058846 AGAATATGAAAAATA TGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-A TGCTCAATTTGAGAT TERM 1322 1058872 - 1058846 - g 93 -12.3 -4.02468 | opp_overlap 1058846, overlap 1058838 1058836 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT TERM 1323 1058846 - 1058872 + G 95 -14.5 -3.23395 | opp_overlap 1058838 1058836 1058846 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT Spy49_1060 1058770 - 1058985 + | hypothetical protein Spy49_1062 1059129 - 1059314 + | Insertion element iso-IS904 coding for a transposase rsuA 1060488 - 1059757 - | Putative 16S pseudouridylate synthase Spy49_1065 1060603 - 1060968 + | hypothetical protein TERM 1324 1061029 - 1060976 - T 100 -12.1 -5.13722 | gap 1, opp_overlap 1060991 CGGAGTAAAACAAAA GAAAAGAACCAAAAAGGTAAGCAATC CCT AAGTGCTTACCTTTTTGGTTATCT-C AATCAATAAAATAGT TERM 1325 1060991 - 1061015 + T 88 -7.2 -4.96646 | opp_overlap 1060976 GAAAAGAACCAAAAA GGTAAGCAAT CCCTA AGTGCTTACC TTTTTGGTTATCTCA Spy49_1066c 1062308 - 1061088 - | hypothetical protein TERM 1326 1061819 - 1061807 - G 76 -3.3 -5.20783 | ATCCAAAGAGAAAAA GGCCA CGC CAGCC TAGACTTGGAGCCAG TERM 1327 1062399 - 1062384 - H 93 -7.6 -5.49809 | CAAAGGTCAAAAAAA GACTTG GAAA CAAGTC CGCAAGTCCATCAAA Spy49_1067 1062720 - 1064165 + | Putative ATP-dependent Zn protease TERM 1328 1064198 - 1064167 - T 100 -13.2 -4.44046 | gap 1, opp_overlap 1064173 1064174 1064176 TTTACCGTAAATAAA CCATAA-CCACCCGT CTA ACGGGTGATTTATGG TATCTCTCAATAAAG TERM 1329 1064173 - 1064191 + T 82 -8.8 -4.05389 | opp_overlap 1064167, overlap 1064174 1064176 GTAAATAAACCATAA CCACCCGT CTA ACGGGTGA TTTATGGTATCTCTC TERM 1330 1064174 - 1064190 + T 87 -12.3 -3.0251 | opp_overlap 1064167, overlap 1064173 1064176 TAAATAAACCATAAC CACCCGT CTA ACGGGTG ATTTATGGTATCTCT TERM 1331 1064176 - 1064188 + T 74 -9.1 -3.05982 | opp_overlap 1064167, overlap 1064174 1064173 AATAAACCATAACCA CCCGT CTA ACGGG TGATTTATGGTATCT TERM 1332 1064205 - 1064261 + T 100 -32.3 -3.39895 | opp_overlap 1064221, overlap 1064221 GATTTATGGTATCTC TCAATAAAGGAAAAAAGTCCCAATTCT CAG AGAGTTGGGACTTTTTTCCTTTATTGA TTCATTAATCACCCG TERM 1333 1064245 - 1064221 - T 100 -11.5 -5.46129 | opp_overlap 1064221 1064205 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTCCTTTATTG TERM 1334 1064221 - 1064245 + T 100 -13.7 -5.46129 | opp_overlap 1064221, overlap 1064205 CAATAAAGGAAAAAA GTCCCAATTCT CAG AGAGTTGGGAC TTTTTTCCTTTATTG Spy49_1070c 1064671 - 1064270 - | Phenylacetic acid degradation protein paaI Spy49_1071c 1065269 - 1064835 - | Uridine phosphorylase TERM 1335 1065346 - 1065368 + r 76 -4.1 -5.17576 | ACAGGGGAAACCTTT GTGGCTGAA ATGAA TTCTGCTAC TTTTTTACCTTGATG TERM 1336 1065644 - 1065632 - R 89 -9.1 -4.18018 | opp_overlap 1065632 CTGCGGGAGTCAAAA GGTCC AGT GGACC TTTTGAGCGTCTCAC TERM 1337 1065632 - 1065644 + r 89 -9.1 -4.13014 | opp_overlap 1065632 CTGCGGGAGTCAAAA GGTCC AGT GGACC TTTTGAGCGTCTCAC Spy49_1072c 1067046 - 1065688 - | Putative RNA methyltransferase TERM 1338 1067114 - 1067091 - R 90 -8.2 -5.02074 | opp_overlap 1067079 1067091 1067094, overlap 1067079 CCATTGCTCAAAAAA GAAGAGCAAC TTTA GTTACTCTCC ATTATACCATATCTT psr 1068579 - 1067128 - | Putative PBP 5 synthesis repressor TERM 1339 1067523 - 1067536 + g 71 -3.8 -4.8622 | CTTCGATGGTTTGGT TGGG AACAAC CCCA TTTTTCATTCGCAGG aroK 1069278 - 1068787 - | Shikimate kinase TERM 1340 1068930 - 1068940 + g 81 -5.4 -5.02201 | opp_overlap 1068930 ACTTAAGAAATAGAG GTCT TTG AGAC TTTTTATCATGTTTT aroA1 1070554 - 1069271 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1341 1070643 - 1070616 - R 85 -6.4 -5.252 | TATCCTCATAAAAAA TGAAGCAAGAAA ATAG TTTCTCACTCCA CGACTTATTATCTTT Spy49_1076c 1071630 - 1070665 - | Ribonuclease BN map 1072492 - 1071632 - | Methionine aminopeptidase Spy49_1078c 1073791 - 1072508 - | hypothetical protein Spy49_1079c 1074342 - 1073800 - | Putative acetyl transferase TERM 1342 1073872 - 1073895 + g 76 -4.6 -5.13521 | opp_overlap 1073873, overlap 1073873 1073881 ATCACTTCCTTTAAA ACAGGTTTTT AGTT GAAAACCTGC TTTTTTAGCTACTTT TERM 1343 1073894 - 1073873 - G 73 -7.4 -4.08216 | opp_overlap 1073872 1073873 1073881 TCACTTCCTTTAAAA CAGGTTTT TAGTTG AAAACCTG CTTTTTTAGCTACTT TERM 1344 1073873 - 1073894 + g 70 -8.1 -3.66486 | opp_overlap 1073873, overlap 1073872 1073881 TCACTTCCTTTAAAA CAGGTTTTT AGTT GAAAACCTG CTTTTTTAGCTACTT TERM 1345 1074321 - 1074311 - G 79 -3.2 -5.42259 | GGAGTCTCAAAAAAA GCAA ACA CTGC AAGCTTTGTCCAAAT TERM 1346 1074549 - 1074536 - R 86 -5.3 -5.70829 | AATATCAGAAAAAAA GAATC TTTC GATTC CCTTGTTTCATTTGC grab 1075148 - 1074609 - | Protein G-related alpha 2 macroglobulin-binding protein (GRAB) TERM 1347 1075504 - 1075487 - R 100 -9.9 -5.48063 | opp_overlap 1075487 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA TERM 1348 1075487 - 1075504 + r 87 -9.9 -3.94853 | opp_overlap 1075487 ATGTAATATAAAAAA GAGAAGC GTTA GCTTCTC TTTAGTCTTCGATTA murZ 1076765 - 1075506 - | UDP-N-acetylglucosamine 1- carboxyvinyltransferase TERM 1349 1075743 - 1075773 + g 86 -9 -4.40237 | GATATCTGCTCCCAT GCGCATCAACTCTG GCA CATGGTTAATGCGC TTTTCATATATAGTG TERM 1350 1076918 - 1076890 - R 86 -5.4 -5.64873 | opp_overlap 1076890 1076893, overlap 1076870 TTTAATAACAAAAAA GCAGAGTAAG ATTTTTTCA CTTACTCTAC TTTTTTAATAAAGTT TERM 1351 1076890 - 1076918 + r 71 -3.2 -5.16237 | opp_overlap 1076870 1076890, overlap 1076893 TTTAATAACAAAAAA GCAGAGTAAG ATTTTTTCA CTTACTCTAC TTTTTTAATAAAGTT metK 1078135 - 1076939 - | S-adenosylmethionine synthetase TERM 1352 1078313 - 1078292 - R 73 -9.5 -2.79684 | gap 1, opp_overlap 1078291, overlap 1078285 CTAGTAAGGCAACTA GCTAGTCCAC CTA GTGG-CTAGC GTCCATTAACCAGAC TERM 1353 1078580 - 1078609 + r 73 -8.7 -3.21218 | opp_overlap 1078585, overlap 1078585 1078607 TCCTATTTATTTCAA AAAAACCTCAAGG TTAT TCTTGAGGTTTTC TTGATAGTCAACAAT TERM 1354 1078585 - 1078604 + r 93 -8.6 -4.73613 | opp_overlap 1078585, overlap 1078580 TTTATTTCAAAAAAA CCTCAAGG TTAT TCTTGAGG TTTTCTTGATAGTCA TERM 1355 1078604 - 1078585 - R 93 -7.9 -5.44119 | opp_overlap 1078580 1078585 TTTATTTCAAAAAAA CCTCAAG GTTATT CTTGAGG TTTTCTTGATAGTCA inlA 1081050 - 1078672 - | internalin, putative TERM 1356 1078841 - 1078854 + g 76 -4.5 -5.09204 | CTTTCTTTCGCCTTA GTAGC CATA GCTGC TTTTTCTTCAGCTGT TERM 1357 1081863 - 1081874 + G 80 -4.4 -5.24129 | GATGTCATTATTGGG GTTG GTCT CAAC TTTTTTGTCACCGAC TERM 1358 1082055 - 1082031 - g 93 -8 -5.38054 | opp_overlap 1082030, overlap 1082016 GTTTACAAAGAAAAA TCACTTGTTC TTAAT AAACAAGTGA CCTTTATAGAAAATA birA 1081425 - 1082195 + | Biotin-protein ligase / Biotin operon repressor Spy49_1086c 1082373 - 1082170 - | hypothetical protein TERM 1359 1082432 - 1082453 + r 87 -10.2 -3.77906 | opp_overlap 1082431 1082430, overlap 1082435 AACGAGATAAAACGT GGGTAAGG GCAAAA CCTTACCC TTATGTATTTCAGTT dnaX 1084139 - 1082469 - | DNA polymerase III subunits gamma and tau Spy49_1088c 1084636 - 1084139 - | hypothetical protein Spy49_1089 1084842 - 1085591 + | hypothetical protein TERM 1360 1085977 - 1085955 - T 88 -7.1 -4.9645 | AGCACAACAATAAAA GAGCAGATT TAAAT AATCTACTC AGCCACTTCCACTAT udk 1086615 - 1085989 - | Uridine kinase TERM 1361 1087318 - 1087329 + G 72 -4.4 -4.68994 | opp_overlap 1087318 AGAGCAAACCAACGA TGCT ATTC AGCA TTTTTACCTCATGGT deaD2 1086713 - 1087798 + | Putative RNA helicase TERM 1362 1087873 - 1087837 - T 100 -15.5 -4.73388 | opp_overlap 1087840 1087843, overlap 1087840 AAGGGCTACTAAAAA CAACAATCCAATTACTT CAA AAGTAATTGGATTGTTT AGTATATCAATTCTA TERM 1363 1087870 - 1087840 - T 100 -17.2 -4.47707 | opp_overlap 1087840 1087843, overlap 1087837 GGCTACTAAAAACAA CAATCCAATTACTT CAA AAGTAATTGGATTG TTTAGTATATCAATT TERM 1364 1087840 - 1087870 + T 100 -17.2 -3.89614 | opp_overlap 1087840 1087837, overlap 1087843 GGCTACTAAAAACAA CAATCCAATTACTT CAA AAGTAATTGGATTG TTTAGTATATCAATT TERM 1365 1087843 - 1087867 + T 100 -13.1 -4.06993 | opp_overlap 1087840 1087837, overlap 1087840 TACTAAAAACAACAA TCCAATTACTT CAA AAGTAATTGGA TTGTTTAGTATATCA Spy49_1092c 1089183 - 1087909 - | Polysaccharide deacetylase family protein TERM 1366 1088682 - 1088672 - G 73 -6.8 -4.26076 | opp_overlap 1088672 1088671 TTATCGCTATTAAAA CCAG CAT CTGG ATATTTTTTTTCAAC TERM 1367 1089269 - 1089233 - R 100 -11.2 -5.69023 | opp_overlap 1089233 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAAC CTAAACTTTTTGTTTA TTTTTTTTAATACTG TERM 1368 1089233 - 1089269 + r 100 -11.2 -5.88471 | opp_overlap 1089233 AAAACATTAAAAAAA TAAACAAAAAGTTAAG TTAAC CTAAACTTTTTGTTTA TTTTTTTTAATACTG gapN 1090707 - 1089304 - | Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) TERM 1369 1089723 - 1089713 - G 73 -5.4 -4.64334 | opp_overlap 1089713 AACCCTTCAACAAAA TCAG CAG CTGA TGTATCAATTAATGG TERM 1370 1090882 - 1090863 - R 95 -8.6 -5.1675 | opp_overlap 1090863 TTAGCTAGCAAAAAA GAGCTGGT TTAA ACCAACTC TTTAACCCGTTAATC ptsI 1092625 - 1090892 - | Phosphoenolpyruvate-protein phosphotransferase of PTS system TERM 1371 1091370 - 1091383 + g 72 -3.1 -5.1356 | ACCGCAACGCCTTCT GCAAG CAAG TTTGC TTTTTCTTCATCAAA TERM 1372 1091854 - 1091869 + g 76 -3.2 -5.28942 | TGTGCGCATCTTTAA GGAGAG ACCA CTCTGC TTTTTGTTTGGCATA ptsH 1092893 - 1092630 - | Phosphocarrier protein of PTS system TERM 1373 1093015 - 1093026 + H 71 -3 -5.10163 | AACGACAAAAAATGT GAAA TTAT TTTC TTTTATTTTCACGTT nrdH 1093253 - 1093504 + | Putative glutaredoxin TERM 1374 1093623 - 1093633 + G 81 -5.4 -5.08824 | opp_overlap 1093623 1093620 CATAAAGACAAAGAA GCTT TAA AAGC TTTTTTCGCTGAAAA nrdE1 1093524 - 1095683 + | Ribonucleotide reductase of class Ib (aerobic), alpha subunit TERM 1375 1095935 - 1095962 + G 79 -8.5 -4.07868 | TTAAACTTATTATTA CCGGTAGAACT TTGGTC GGTTCTACTGG TTTATCTCGATATCC nrdF1 1095664 - 1095981 + | hypothetical protein TERM 1376 1096092 - 1096072 - gf 72 -8.4 -3.36505 | AGACGTCATTGACAA GTCAACTT GGGAA AAGTTGAC CGAACAATTTTGGCT TERM 1377 1096476 - 1096466 - gf 74 -5.4 -4.64861 | GCGTTGCAAAAGAAA GTTG CCT CAAC ATATCTCGAAACTTT Spy49_1099 1096016 - 1096975 + | Ribonucleotide reductase of class Ib (aerobic), beta subunit TERM 1378 1096986 - 1097008 + GF 84 -7.8 -4.77719 | opp_overlap 1096990, overlap 1096988 TCTAATAGTGCTCAC RAGACTGATA ATC TATCAGTCTC TTTTCTTAACTTTTG TERM 1379 1096988 - 1097006 + GF 93 -10.4 -3.98064 | opp_overlap 1096990, overlap 1096986 TAATAGTGCTCACRA GACTGATA ATC TATCAGTC TCTTTTCTTAACTTT Spy49_1100 1096950 - 1098263 + | Putative chloride channel protein TERM 1380 1098590 - 1098545 - g 77 -4.8 -4.93316 | gap 1, opp_overlap 1098555, overlap 1098547 1098555 CAAGAATATGAAAAA TATGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-ATG CTCAATTTRAGAYAA TERM 1381 1098588 - 1098547 - g 73 -7.4 -4.06487 | gap 1, opp_overlap 1098555, overlap 1098545 1098555 AGAATATGAAAAATA TGGAGAAAGTGCGTTCCCA GGACA TGGGAGCGCACTTCGTC-A TGCTCAATTTRAGAY TERM 1382 1098581 - 1098555 - g 93 -12.3 -4.02468 | opp_overlap 1098555, overlap 1098547 1098545 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT TERM 1383 1098555 - 1098581 + G 95 -14.5 -3.23395 | opp_overlap 1098555 1098547 1098545 AAAAATATGGAGAAA GTGCGTTCCCA GGACA TGGGAGCGCAC TTCGTCATGCTCAAT Spy49_1101 1098401 - 1098694 + | hypothetical protein Spy49_1103 1099127 - 1099297 + | Transposase Spy49_1104 1099337 - 1099558 + | Transposase Spy49_1105c 1100346 - 1099651 - | hypothetical protein Spy49_1106c 1101126 - 1100365 - | hypothetical protein TERM 1384 1100634 - 1100621 - G 73 -6.7 -4.2018 | overlap 1100625 1100627 AAATTTGGAAAATAA GGAAC ATCG GTTCC CCGAATGGCATTGTA Spy49_1107c 1101353 - 1101123 - | Transcriptional regulator, Cro/CI family TERM 1385 1101695 - 1101658 - R 86 -10.2 -3.61178 | opp_overlap 1101657 1101667, overlap 1101667 GGTAGTCATTTCAAA TATAAAAAACCAAGTT CTAAAT AACTTGGTTTTTTATG GATTTACACTGTTTC TERM 1386 1101667 - 1101686 + r 85 -6.5 -5.33866 | opp_overlap 1101658 1101667, overlap 1101657 TTCAAATATAAAAAA CCAAGTT CTAAAT AACTTGG TTTTTTATGGATTTA TERM 1387 1101686 - 1101667 - R 87 -6.5 -5.56264 | opp_overlap 1101667 1101657, overlap 1101658 TTCAAATATAAAAAA CCAAGTT CTAAAT AACTTGG TTTTTTATGGATTTA alaS 1104317 - 1101699 - | Alanyl-tRNA synthetase TERM 1388 1102048 - 1102028 - G 70 -9.7 -2.54801 | opp_overlap 1102028 1102031 1102039, overlap 1102027 1102025 1102030 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGTT TERM 1389 1102028 - 1102048 + g 79 -9.7 -3.78189 | opp_overlap 1102028 1102027 1102025 1102030, overlap 1102031 1102039 CATCTTTAAAGACAT CACCAGCTG CTG CAGCTGCTG CTTTTTCTTTAAGTT TERM 1390 1102031 - 1102045 + g 72 -10 -2.65994 | opp_overlap 1102030 1102028 1102027 1102025, overlap 1102028 1102039 CTTTAAAGACATCAC CAGCTG CTG CAGCTG CTGCTTTTTCTTTAA TERM 1391 1102039 - 1102049 + g 89 -6.8 -5.33026 | opp_overlap 1102030 1102028 1102027 1102025, overlap 1102031 1102028 ACATCACCAGCTGCT GCAG CTG CTGC TTTTTCTTTAAGTTC prtM1 1105759 - 1104704 - | Foldase protein prsA 1 precursor Spy49_1110c 1106529 - 1105822 - | Putative methyltransferase TERM 1392 1106568 - 1106551 - R 93 -7 -5.75478 | opp_overlap 1106546 1106551 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT TERM 1393 1106551 - 1106568 + r 75 -7 -4.24432 | opp_overlap 1106551, overlap 1106546 AATTATATAAAAAAA CCCTAG GCTTTG CTAGGG TTTACTTTTAAATTT Spy49_1111c 1107791 - 1106595 - | Putative oxalate:formate antiporter TERM 1394 1107812 - 1107850 + r 80 -7 -4.57218 | opp_overlap 1107814 1107818 1107819 ACTCCTTTTTTATTA TACGAACGTTTATTTTTT AAA AAAACATAAATGTTAGTA TTTTAATTCTATTAT TERM 1395 1108136 - 1108082 - R 100 -21.9 -5.40873 | opp_overlap 1108095, overlap 1108083 AATATAAAAAGAAAA TGACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATCC TAAACTCTTTTTGTC TERM 1396 1108135 - 1108083 - R 100 -25.4 -3.80863 | opp_overlap 1108095, overlap 1108082 ATATAAAAAGAAAAT GACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATC CTAAACTCTTTTTGT TERM 1397 1108095 - 1108123 + r 100 -14.8 -4.07124 | opp_overlap 1108083 1108082 AATGACCGATAGAAA TGGAGATTCACA CCAAC TGTGAATCTCCA TTTCTATCAATCCTA pepB 1109973 - 1108168 - | Group B oligopeptidase pepB Spy49_1113c 1110948 - 1109986 - | Putative transcription factor Spy49_1114c 1111961 - 1111245 - | Putative 16S pseudouridylate synthetase TERM 1398 1111389 - 1111403 + g 81 -7.2 -4.49389 | overlap 1111375 GGTCAAAAACATTTT TTTCAC TTG GTGAAA TTTTCCTTCTGAAAT nagB 1112784 - 1112080 - | Glucosamine-6-phosphate deaminase queA 1112986 - 1114014 + | S-adenosylmethionine:tRNA ribosyltransferase- isomerase Spy49_1117 1114021 - 1115241 + | hypothetical protein TERM 1399 1115251 - 1115276 + T 100 -13.4 -5.14563 | opp_overlap 1115251 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGTCAAGC TTTTTTAATGAGCAA TERM 1400 1115276 - 1115251 - T 100 -13.4 -4.67904 | opp_overlap 1115251 CATTAATCTCAAAAA GCTTGACCTG AAGAAA CAGGTCAAGC TTTTTTAATGAGCAA Spy49_1119c 1115945 - 1115355 - | hypothetical protein Spy49_1120c 1116190 - 1115942 - | hypothetical protein Spy49_1121c 1116402 - 1116175 - | hypothetical protein TERM 1401 1116372 - 1116383 + g 74 -4.4 -4.90002 | TTCCTAAAATAATCC CTAC AATG GTAG TTTTCTTCTCTCTTA TERM 1402 1116553 - 1116531 - R 100 -10.7 -4.7329 | opp_overlap 1116552 AAAAGCAGTTAAAAA TCCAATCTC TTTTT GAGATTGGA AACCCTTTTCTTATT sodM 1117168 - 1116524 - | Superoxide dismutase (Mn) holA 1118305 - 1117265 - | DNA polymerase III delta subunit TERM 1403 1118003 - 1118014 + g 79 -3.6 -5.45802 | opp_overlap 1117994, overlap 1117994 TAAATAGGCTTCAAA GGCC TTTA GGTC TTTTTCTTTTAAGAA TERM 1404 1118076 - 1118061 - G 76 -7.6 -4.23213 | opp_overlap 1118060, overlap 1118074 GTGATATCTAACAAA TGGTCA AAAA TGACCA CCTTCTGCTCAGCAA comEC 1120619 - 1118376 - | DNA internalization-related competence protein ComEC/Rec2 TERM 1405 1118804 - 1118786 - G 76 -11 -2.5294 | overlap 1118785 1118783 CACTTCCCATAATAG GCAACTGG TCT CCAGCTGC TAAAACCCTAACGTG TERM 1406 1119014 - 1119050 + g 73 -7.2 -4.07568 | GAATTAAGGTTTTCT GAGCATTAGCTACGTG ATGTC CTCGTCGCCAGTGCTC TTTTGAAGAAAAGAA TERM 1407 1119264 - 1119254 - G 89 -5.4 -5.39755 | overlap 1119261 GATAATCATAAAAAA TAGC GAA GCTA ATCACCAAGATAAGC TERM 1408 1119659 - 1119649 - G 73 -6.8 -4.26202 | ACAGTCATTAAGAAA TGGG CAT CCCA TAAAAAGACAAGTAA comE 1121262 - 1120600 - | Putative competence protein Spy49_1127c 1122202 - 1121462 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 1409 1122669 - 1122640 - g 70 -2.9 -5.1101 | gap 1, opp_overlap 1122641, overlap 1122641 TGATGATTTAAAAAA CCTCCTAAACCATG TGC CACG-TTCAGGAGT TGATTTGATGCTCTG Spy49_1128 1122242 - 1123096 + | hypothetical protein Spy49_1129 1123086 - 1123364 + | hypothetical protein TERM 1410 1123358 - 1123382 + T 93 -7.3 -5.71983 | opp_overlap 1123358, overlap 1123347 AAAAGAAAAGAAAAA TCATTGAGA CTTATCA TCTCAATGA TTTTTTTATGCTTCA TERM 1411 1123382 - 1123358 - T 93 -8 -5.70761 | opp_overlap 1123347 1123358 AAAAGAAAAGAAAAA TCATTGAGAC TTATC ATCTCAATGA TTTTTTTATGCTTCA kup 1125388 - 1123388 - | Potassium uptake protein, putative TERM 1412 1125513 - 1125480 - R 93 -9.1 -4.37658 | opp_overlap 1125487, overlap 1125487 AACTTTTTCAGAAAA TTAAAAAGAGCTGAC TCTC ATCAACTCTCTTTAA GCTTATTCACCTTTG TERM 1413 1125506 - 1125487 - R 77 -5 -5.1417 | opp_overlap 1125487, overlap 1125480 TCAGAAAATTAAAAA GAGCTGAC TCTC ATCAACTC TCTTTAAGCTTATTC deaD1 1127135 - 1125516 - | Putative ATP-dependent RNA helicase prfC 1128986 - 1127442 - | Peptide chain release factor 3 TERM 1414 1129197 - 1129170 - R 80 -2.6 -5.75342 | opp_overlap 1129172, overlap 1129171 1129172 1129174 TCTTTTTAAAAAAAA TCGAGCCTGGAA ATCA TCCCAGACTCTT CTTATTATAGCTGAT TERM 1415 1129195 - 1129172 - R 77 -9.6 -3.01966 | opp_overlap 1129172, overlap 1129171 1129170 1129174 TTTTTAAAAAAAATC GAGCCTGGAA ATCA TCCCAGACTC TTCTTATTATAGCTG Spy49_1135c 1129929 - 1129234 - | hypothetical protein TERM 1416 1129985 - 1129997 + r 74 -6.3 -4.38712 | opp_overlap 1129984 CATGAGAGAACAAGC CTTTC TCT GAAAG TTTTATAAAAATCAA murF 1131400 - 1130009 - | UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase TERM 1417 1130448 - 1130461 + g 72 -3.1 -5.05782 | gap 1, opp_overlap 1130433 1130446 1130448, overlap 1130446 TCTGATAAAATATCA GCA-CC ATT GGCTGC TTTTTTCCACTCCGT TERM 1418 1131032 - 1131051 + g 75 -9.4 -3.29704 | overlap 1131029 AGTTTTGTAAGTGGT TGATAGGA CAGC TCCTATCA TATCTTTGGTGGAAG ddlA 1132637 - 1131591 - | D-alanine--D-alanine ligase TERM 1419 1131786 - 1131774 - G 72 -3.3 -5.06414 | overlap 1131781 TTGGGTCAAGAAAAA GTCAC AAC GGGAC AACCCACAACCACCT recR 1133334 - 1132738 - | Recombination protein recR Spy49_1139c 1133572 - 1133381 - | hypothetical protein fdhC 1134947 - 1134132 - | Formate/nitrite transporter family member TERM 1420 1135005 - 1134974 - R 100 -10.3 -5.01732 | gap 1, opp_overlap 1134974 1134976, overlap 1134976 1134979 AATTTTCCTAAAAAA TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA TTATCATATAACTAT TERM 1421 1134974 - 1135005 + r 72 -8.1 -3.47841 | gap 1, opp_overlap 1134974 1134976 1134979, overlap 1134976 AATTTTCCTAAAAAA TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA TTATCATATAACTAT TERM 1422 1134976 - 1135002 + r 81 -10.9 -2.88069 | opp_overlap 1134974 1134976 1134979, overlap 1134974 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1423 1135002 - 1134976 - R 87 -13.1 -2.75708 | opp_overlap 1134976 1134974, overlap 1134974 1134979 TTTTCCTAAAAAATG CAAGCCCTTTC AACAA GAAAGGGCTCG TCATTATCATATAAC TERM 1424 1134999 - 1134979 - R 89 -11.2 -3.52177 | opp_overlap 1134976 1134974, overlap 1134976 1134974 TCCTAAAAAATGCAA GCCCTTTC AACAA GAAAGGGC TCGTCATTATCATAT Spy49_1141c 1135576 - 1135034 - | hypothetical protein TERM 1425 1135530 - 1135519 - G 70 -5.8 -4.42238 | TTATCGGAATCAAAA TCGC AAAT GCGA CCAAAATAGAGGTAT Spy49_1142c 1136258 - 1135737 - | Transcriptional regulator, biotin repressor family TERM 1426 1136364 - 1136333 - R 89 -11 -3.61902 | opp_overlap 1136341, overlap 1136341 TCTTAGGATATAGAA CCAAAAAACCAGAC CAAA GTCTGGTTTTTAAG TTATTCACCACCAAG TERM 1427 1136341 - 1136356 + r 93 -9 -4.8143 | opp_overlap 1136333 1136341 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1428 1136356 - 1136341 - R 95 -9 -5.35354 | opp_overlap 1136341, overlap 1136333 TATAGAACCAAAAAA CCAGAC CAAA GTCTGG TTTTTAAGTTATTCA TERM 1429 1136389 - 1136403 + r 70 -3.6 -4.84274 | overlap 1136390 ACCAAGGTAGTATTC TTTAAC AAT GTTAAG TTTTTCATCTAATTC gpmA 1137060 - 1136365 - | Phosphoglycerate mutase TERM 1430 1137655 - 1137645 - g 73 -6.8 -4.18094 | GAAACCATTTTAAAA GCCA TCA TGGC TTCAGATTATGAGGA pyrD 1137357 - 1138238 + | Dihydroorotate dehydrogenase TERM 1431 1138256 - 1138289 + T 100 -12.7 -4.62069 | gap 1, opp_overlap 1138256 TTAATAGTCAAAAAA GCTTGGAAA-TGTGCA CTT TGTACACTTTCCAAGC TTTTTAAAATGGGAA TERM 1432 1138289 - 1138256 - T 100 -14.1 -5.1615 | gap 1, opp_overlap 1138256 TTAATAGTCAAAAAA GCTTGGAAATGTGCAC TTT GTACAC-TTTCCAAGC TTTTTAAAATGGGAA Spy49_1145c 1138466 - 1138293 - | hypothetical protein cadA 1140400 - 1138538 - | Putative heavy metal-transporting ATPase TERM 1433 1140720 - 1140679 - R 100 -11.1 -5.88197 | opp_overlap 1140682 1140683, overlap 1140682 1140683 CCAAATATAAAAAAA GAACCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGATTT TTCTAGACGAATTAT TERM 1434 1140682 - 1140717 + r 77 -6.2 -4.83169 | opp_overlap 1140682 1140679 1140683, overlap 1140683 AATATAAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1435 1140717 - 1140682 - R 100 -12.8 -4.94703 | opp_overlap 1140682 1140683, overlap 1140679 1140683 AATATAAAAAAAGAA CCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGA TTTTTCTAGACGAAT TERM 1436 1140683 - 1140716 + r 81 -9.7 -3.49419 | opp_overlap 1140683 1140682 1140679, overlap 1140682 ATATAAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA TERM 1437 1140716 - 1140683 - R 100 -14.1 -3.53161 | opp_overlap 1140682 1140683, overlap 1140682 1140679 ATATAAAAAAAGAAC CTTGTCGCTATCAAT AAAC ATCGATAGCAACAAG ATTTTTCTAGACGAA Spy49_1147c 1141007 - 1140732 - | DNA-binding protein HU Spy49_1148c 1141693 - 1141106 - | hypothetical protein TERM 1438 1141436 - 1141458 + g 80 -2 -5.59357 | opp_overlap 1141436 CAAAATAGAAGAAGA TGTCGCATAA AAT TTATAAGACA TTTTTTTAGTCTGAT Spy49_1149c 1142513 - 1141671 - | Lipase/acylhydrolase Spy49_1150c 1143357 - 1142506 - | DegV family protein TERM 1439 1142711 - 1142723 + g 71 -4.9 -4.63218 | AGGTAACTATCTAAC CATTT CGT AAATG TTTTATTACCCCGAC TERM 1440 1143504 - 1143545 + r 73 -3.7 -5.03314 | gap 1, opp_overlap 1143504 1143499 1143497 TAACGAGATACAAAA CGAGGCAAAAGT-CAACCTT TTC ACGCTTGAACATTTGCCCCG TTTTTTACAACTACA TERM 1441 1143545 - 1143504 - R 74 -5.9 -4.64591 | gap 1, opp_overlap 1143504, overlap 1143499 1143497 TAACGAGATACAAAA CGAGGCAAAAGT-CAACCTT TTC ACGCTTGAACATTTGCCCCG TTTTTTACAACTACA Spy49_1151c 1144529 - 1143573 - | hypothetical protein TERM 1442 1143669 - 1143679 + g 83 -3.2 -5.61881 | CTCCTCTCCCGTTTG TGGC AGG GCTA TTTTTCTTTTTGCAA recN 1146362 - 1144701 - | Putative DNA repair and genetic recombination protein Spy49_1153c 1146853 - 1146383 - | Putative repressor protein TERM 1443 1146761 - 1146738 - G 71 -9.6 -2.84325 | opp_overlap 1146741, overlap 1146735 1146733 TCTCTTGAAATAGTA GCCTGGGTTA ATTC TAACCCATGC TCTGCCAATAATCTT Spy49_1154c 1147667 - 1146840 - | Putative hemolysin fps 1148532 - 1147867 - | Octaprenyl-diphosphate synthase / Dimethylallyltransferase / Geranyltranstransferase / Geranylgeranyl pyrophosphate synthetase xseB 1148747 - 1148532 - | Probable exodeoxyribonuclease VII small subunit TERM 1444 1148571 - 1148584 + g 76 -3.1 -5.25803 | GCCATCAGCTTGCAT CACTT TGAC GAGTG TTTTTTCTGCCGCTT xseA 1150065 - 1148725 - | Probable exodeoxyribonuclease VII large subunit TERM 1445 1149855 - 1149870 + g 80 -4.7 -5.26316 | TTTTCATGCCTTCTT CTAGG TCGAAT CCTAG TTTTTTATAGACTCC TERM 1446 1150184 - 1150165 - R 91 -2.8 -5.98675 | opp_overlap 1150166, overlap 1150166 CAGAAAAACAAAAAA GGAAGCCA TTGC TGACTTCT TATATTCTCTTATGT TERM 1447 1150183 - 1150166 - R 71 -6.3 -4.15545 | opp_overlap 1150166, overlap 1150165 AGAAAAACAAAAAAG GAAGCCA TTGC TGACTTC TTATATTCTCTTATG folD 1151072 - 1150218 - | Putative bifunctional methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase Spy49_1159c 1152974 - 1151280 - | phosphoglucomutase/phosphomannomutase family protein TERM 1448 1151712 - 1151726 + g 73 -7.8 -3.85698 | opp_overlap 1151712 TACAATCATCATAGA GGCGCT AAC AGCGTC TTTGTCACGAACAAA phr 1154561 - 1153152 - | Putative deoxyribodipyrimidine photolyase TERM 1449 1153430 - 1153414 - G 90 -10.9 -4.2142 | AATATTCTAAAATAA GGAACAG CAT CTGTTCC AGTGGAAGCAGCCCA TERM 1450 1154653 - 1154695 + r 100 -24 -3.14463 | opp_overlap 1154653 1154661, overlap 1154661 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TGA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1451 1154695 - 1154653 - R 100 -24 -3.73968 | opp_overlap 1154653 1154661, overlap 1154661 AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TGA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT TERM 1452 1154687 - 1154661 - R 100 -16.8 -4.63172 | opp_overlap 1154661 1154653, overlap 1154653 TAGCAAATTATAAAA GGAAGTCCTAAA TGA TTTAGGACTTCC TTTTATAATTCATAG TERM 1453 1154661 - 1154687 + r 100 -16.8 -4.56607 | opp_overlap 1154653 1154661, overlap 1154653 TAGCAAATTATAAAA GGAAGTCCTAAA TGA TTTAGGACTTCC TTTTATAATTCATAG gtr 1155444 - 1154710 - | Putative amino acid ABC transporter Spy49_1162c 1156130 - 1155444 - | Putative amino acid ABC transporter TERM 1454 1156245 - 1156215 - R 83 -10.6 -3.30007 | opp_overlap 1156221 1156223 1156241, overlap 1156223 AATACTTTTTGACAA TAAAAAAACCTGCC TCA GGCAAGTCTCTTTA CTATGTCAAGCTTAA TERM 1455 1156237 - 1156223 - R 100 -7.8 -5.88565 | opp_overlap 1156221 1156223, overlap 1156215 TTGACAATAAAAAAA CCTGCC TCA GGCAAG TCTCTTTACTATGTC Spy49_1163c 1156487 - 1156257 - | hypothetical protein clpE 1156785 - 1159067 + | Putative ATP-dependent protease TERM 1456 1159076 - 1159103 + F 75 -5 -5.01546 | gap 1, opp_overlap 1159078 1159080, overlap 1159078 AGATTAACGTTAGCT AAGAGAGT-TTCT ATA AGAAGACTCTCTC TTTTTCTATCAATTT TERM 1457 1159078 - 1159101 + F 78 -7.6 -4.11744 | gap 1, opp_overlap 1159078 1159080, overlap 1159076 ATTAACGTTAGCTAA GAGAGT-TTCT ATA AGAAGACTCTC TCTTTTTCTATCAAT mutT 1159195 - 1159650 + | MutT/nudix family protein Spy49_1166 1159701 - 1160003 + | hypothetical protein TERM 1458 1160052 - 1160029 - T 82 -7.5 -4.55287 | opp_overlap 1160029 GCTATTCAGACAAAA CTTAGCCCT TCTAAC AGAGCTAAG TTTTTTTATTAGCGA TERM 1459 1160029 - 1160052 + T 91 -5.3 -5.7946 | opp_overlap 1160029 GCTATTCAGACAAAA CTTAGCCCT TCTAAC AGAGCTAAG TTTTTTTATTAGCGA TERM 1460 1160204 - 1160227 + T 90 -11 -3.85505 | opp_overlap 1160204 AGCTCTACTAAAAAA CCATCAGGTC CTAA GACCCGATGG TTGTCTTCTTACTCA TERM 1461 1160227 - 1160204 - T 100 -13.2 -5.14965 | opp_overlap 1160204 AGCTCTACTAAAAAA CCATCAGGTC CTAA GACCCGATGG TTGTCTTCTTACTCA ileS 1163024 - 1160268 - | Isoleucyl-tRNA synthetase TERM 1462 1160709 - 1160719 + g 71 -6.8 -4.09108 | overlap 1160714 AGCTGAGAAGGTTTC TGCC ACA GGCA TTTCTGTCAATTGAA divIVA 1164100 - 1163342 - | Cell-division initiation protein Spy49_1169c 1164901 - 1164110 - | hypothetical protein Spy49_1170c 1165155 - 1164901 - | YGGT family protein Spy49_1171c 1165828 - 1165160 - | hypothetical protein Spy49_1172c 1166499 - 1165828 - | hypothetical protein ftsZ 1167821 - 1166502 - | Cell division protein ftsZ ftsA 1169209 - 1167845 - | Cell division protein ftsA TERM 1463 1169206 - 1169195 - G 73 -2.2 -5.243 | CAAACCAGTAAAAAA GCCA TTTC TAGC CATTCACTTGACCTC TERM 1464 1169321 - 1169300 - R 100 -10.3 -5.69473 | opp_overlap 1169300 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA TERM 1465 1169300 - 1169321 + r 100 -10.3 -5.60689 | opp_overlap 1169300 TATACCATAAAAAAA CGTAAAATG TTAT CATTTTACG TTTTTTGTTATATAA ftsQ 1170568 - 1169420 - | Cell division protein ftsQ TERM 1466 1170356 - 1170366 + g 73 -5.4 -4.49344 | TTCTGACTCAATTTC CTGA CTA TCAG TTTTCTCATCAGTTT TERM 1467 1170392 - 1170404 + g 71 -6.3 -4.20696 | overlap 1170385 AGTTTTAAGCTCAAC TGCTT CAG AAGCA TTTTGAGCTTGCTGC murG 1171651 - 1170569 - | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase murD 1173009 - 1171651 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 1468 1173293 - 1173322 + r 89 -8.8 -4.50976 | gap 1, opp_overlap 1173293, overlap 1173288 TGAACTATTAAAAAA GGACTGATATTGT CTAAA ACAA-ATCAGTCC TTTTATCGTATAAAA TERM 1469 1173322 - 1173293 - R 100 -9.5 -5.2189 | gap 1, opp_overlap 1173288 1173293 TGAACTATTAAAAAA GGACTGATATTGTC TAA AACAA-ATCAGTCC TTTTATCGTATAAAA Spy49_1178c 1173616 - 1173365 - | hypothetical protein Spy49_1179c 1175579 - 1173738 - | Putative GTP-binding protein TypA/BipA Spy49_1180c 1176151 - 1175762 - | hypothetical protein Spy49_1181c 1177132 - 1176161 - | Glucokinase Spy49_1182c 1177340 - 1177137 - | hypothetical protein TERM 1470 1177312 - 1177295 - G 83 -4.9 -5.33026 | opp_overlap 1177295 CAAGGTAAACAAAAA TGCCAAA GTTT TTTAGCA ATTGTTGCACATCAT TERM 1471 1177459 - 1177436 - R 84 -6.1 -5.26316 | opp_overlap 1177436 TGATTCCATAAAAAA GAAGCCAAT TTTATC ATTGACTTC TTTTATCCTAAGGCA Spy49_1183c 1178009 - 1177482 - | Putative peroxide resistance protein TERM 1472 1177508 - 1177528 + g 70 -2.5 -5.04385 | overlap 1177511 1177512 GGCCTTGTCCACGCT CTGCTTGGA GCA TCCAAATGG TTTTTTCAGCCTCTG TERM 1473 1177751 - 1177741 - G 73 -8.2 -3.80733 | GCTAGGGTAGAATAA GGCG CTC CGCC AATAGTGATCAAACG Spy49_1184 1178237 - 1178863 + | Type IV prepilin peptidase-like protein TERM 1474 1178898 - 1178877 - T 82 -5.2 -5.37043 | AGGCCAGATAAAAAA CCTAGTCA TTTTAG TAACTAGG AATATTTTGTCATCA Spy49_1185c 1180024 - 1178945 - | hypothetical protein TERM 1475 1179318 - 1179302 - G 71 -9.5 -2.80545 | overlap 1179301 1179299 TATAGCTGAAAAGAG CTTTTCC AGC GGAAAAG AGCGATTTACTCGCA Spy49_1186c 1180648 - 1180028 - | hypothetical protein TERM 1476 1180624 - 1180635 + g 70 -3 -5.14819 | TATTATAGTTGTACA TTTC TGGC GAAA TTTCTTTTTTCATTT Spy49_1187c 1182073 - 1181096 - | Ribose operon repressor TERM 1477 1182431 - 1182383 - R 76 -4.5 -5.08824 | opp_overlap 1182383 1182384, overlap 1182384 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTATGAGTTAA TERM 1478 1182383 - 1182431 + r 79 -4.5 -5.31456 | opp_overlap 1182383 1182384, overlap 1182384 GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTATGAGTTAA TERM 1479 1182430 - 1182384 - R 73 -8 -3.64812 | opp_overlap 1182383 1182384, overlap 1182383 TTTTATGTAAAAAAT GATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACC GTTTTTTATGAGTTA Spy49_1188c 1183524 - 1182487 - | ATP-dependent protease La TERM 1480 1182683 - 1182654 - G 70 -5.7 -4.36592 | opp_overlap 1182654, overlap 1182657 TCGGAACAAAAAATA TATCTGCACCAGC TTCA GCTGCTGCAACTA CTTTAAGACCTGCAC kdtB 1184002 - 1183511 - | Phosphopantetheine adenylyltransferase Spy49_1190c 1184531 - 1183992 - | hypothetical protein asnA 1185646 - 1184654 - | Aspartate--ammonia ligase TERM 1481 1185827 - 1185794 - R 100 -14.9 -4.37711 | opp_overlap 1185799, overlap 1185799 CTATCAAAGCTAAAA GAAAAGGCTAATTCT CAAT AAAATTAGCCTTTTC TAATACTACTATTGT TERM 1482 1185799 - 1185822 + r 76 -6.8 -4.49311 | opp_overlap 1185799 1185794 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTACT TERM 1483 1185822 - 1185799 - R 95 -9 -5.14698 | opp_overlap 1185799, overlap 1185794 AAAGCTAAAAGAAAA GGCTAATTCT CAAT AAAATTAGCC TTTTCTAATACTACT arcC 1186909 - 1185959 - | Carbamate kinase Spy49_1193c 1188260 - 1186929 - | Xaa-His dipeptidase Spy49_1194c 1189578 - 1188277 - | hypothetical protein TERM 1484 1189847 - 1189801 - R 83 -7.5 -4.83169 | gap 2, opp_overlap 1189801 1189804, overlap 1189804 ACCTTTTCATAAAAA TAAGCCGTTCTAGTT-CCG-GTC AAG GACGCGAAAACCAGAACGACTTG TCATGTAGTTAAAGT TERM 1485 1189844 - 1189804 - R 93 -9.2 -4.52873 | gap 2, opp_overlap 1189801 1189804, overlap 1189801 TTTTCATAAAAATAA GCCGTTCTAGTT-CCG-GTC AAG GACGCGAAAACCAGAACGAC TTGTCATGTAGTTAA arcB 1190954 - 1189941 - | Ornithine carbamoyltransferase TERM 1486 1190367 - 1190384 + g 71 -6.3 -4.25256 | opp_overlap 1190367 1190366 AGCCAATGTCACAAT CTCTTCT TCTG GGAAGAG TTCTTTTGGTGAGAA Spy49_1196c 1191419 - 1190979 - | hypothetical protein TERM 1487 1191075 - 1191088 + g 71 -5.3 -4.57341 | GTCCATATTCTTCTC CCATT TAAG AATGG TTTTTGCAAGGGATT arcA 1192754 - 1191519 - | Arginine deiminase TERM 1488 1191974 - 1191987 + g 70 -3.1 -4.87803 | overlap 1191975 CAAAGGCCAATACTT TCTTG AAGC CAAGG TTTTGTTTAAAGATG TERM 1489 1192882 - 1192900 + r 70 -3.8 -4.855 | overlap 1192877 GCCATTTTGAGTAAT CGCTTACA TTT TTTGAGCG TTGTTTTTATTTTTA Spy49_1198c 1193708 - 1193028 - | Transcriptional regulator, CrP/Fnr family TERM 1490 1193585 - 1193595 + g 70 -3.2 -4.87318 | CTCCCTCAAAAAAAA GGAT ATG GTCC TTTTTAGCTTTTCGG argR 1193850 - 1194323 + | Putative arginine repressor TERM 1491 1194403 - 1194446 + T 100 -7.6 -5.80364 | gap 1, opp_overlap 1194403 AAATCTCATCAAAAA GCGAGTAAACGAA-AACCT AAATGAC AGGACATTCGTTTACTCGC TTTTTTTGTTAACCT TERM 1492 1194446 - 1194403 - T 100 -10.5 -4.75404 | gap 1, opp_overlap 1194403 AAATCTCATCAAAAA GCGAGTAAACGAA-AACCTA AATGA CAGGACATTCGTTTACTCGC TTTTTTTGTTAACCT Spy49_1200c 1195206 - 1194490 - | hypothetical protein Spy49_1201c 1196299 - 1195220 - | hypothetical protein yesM 1198105 - 1196372 - | Putative two-component sensor histidine kinase TERM 1493 1196479 - 1196494 + g 73 -7.6 -4.10161 | TGGTCATGTGGTAGC CTTCAC CATA GTGAAG TTTTAACCGCTGGTC yesN 1198842 - 1198102 - | Putative two-component response regulator TERM 1494 1198816 - 1198790 - G 91 -11.7 -4.12947 | opp_overlap 1198790 1198788 1198794 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1495 1198790 - 1198816 + g 73 -9.5 -3.25192 | opp_overlap 1198790, overlap 1198788 1198794 AAATCAACCAAAGAA CGAATACCCTG GCGCA CAAGGTATTCG TCTTCTACAATTAAC TERM 1496 1198882 - 1198867 - R 73 -7.5 -3.87815 | opp_overlap 1198867 CCTTATCCTTATAAA GGGCC TTGCAT GGCCC TCTCATACTAGTCTT msrA1 1200036 - 1198930 - | Peptide methionine sulfoxide reductase msrA/msrB TERM 1497 1199408 - 1199431 + g 74 -3.8 -5.08601 | opp_overlap 1199414, overlap 1199400 1199414 GTCGCTTGGTTGATG TCAATATGGC AGTA GCCATTTGGA TTTTTCTTGAGGTAA Spy49_1205c 1200702 - 1200079 - | hypothetical protein ccdA 1201404 - 1200715 - | Cytochrome c-type biogenesis protein TERM 1498 1201578 - 1201552 - R 100 -9.4 -4.69027 | opp_overlap 1201552 AAAGGCATGTAAAAA CCCGACCTCTCT TTT AATGAGGTCAGG TTCATCTTTCAATCC TERM 1499 1201613 - 1201595 - R 77 -10.3 -2.52896 | TCATCTTTCAATCCA CTCACCC ATGAA GGGTGAG ACAAGATGACACTGG TERM 1500 1201680 - 1201662 - R 77 -10.3 -2.57162 | AAAAATTTCAATCCA CTCACCC ATGAA GGGTGAG ACAGATCTTAAAATG TERM 1501 1201747 - 1201729 - R 77 -10.3 -2.53876 | TTTGATTTCAATCCA CTCACCC ATGAA GGGTGAG ACGATAACAGTTGCT TERM 1502 1201814 - 1201796 - R 77 -10.3 -2.53995 | opp_overlap 1201794 AGCGATTTCAATCCA CTCACCC ATGAA GGGTGAG ACATTATGTTTTGCC TERM 1503 1201862 - 1201848 - R 76 -2.8 -5.42514 | opp_overlap 1201861 TGAGAAAGTAAAAAA TGGAAT TTC AATCCA CTCACCCATGAAGGG TERM 1504 1201881 - 1201863 - R 77 -10.3 -2.55074 | opp_overlap 1201861 1201875, overlap 1201875 TGGAATTTCAATCCA CTCACCC ATGAA GGGTGAG ACTCCCTTATAATCG TERM 1505 1201946 - 1201928 - R 77 -10.3 -2.54193 | GATTATTTCAATCCA CTCACCC ACGAA GGGTGAG ACTGCGCCAAATGAC Spy49_1207c 1202390 - 1202097 - | hypothetical protein TERM 1506 1202210 - 1202190 - G 70 -2.5 -5.09762 | overlap 1202192 CCCCAATAAATAAAA GCGAATACT ATC AGTTTTCTC ATCAATGATTTGTGT Spy49_1208c 1203426 - 1202401 - | hypothetical protein TERM 1507 1202569 - 1202559 - G 76 -3.2 -5.25906 | ACAAATCAATAAAAA TAGC TCT GCCA TTTTCCGTCAATAAA Spy49_1209c 1204097 - 1203423 - | hypothetical protein Spy49_1210c 1204947 - 1204099 - | hypothetical protein Spy49_1211c 1206847 - 1204952 - | hypothetical protein Spy49_1212c 1207575 - 1206847 - | hypothetical protein Spy49_1213c 1210110 - 1207708 - | ATP-dependent RNA helicase SrmB, putative TERM 1508 1208515 - 1208534 + g 71 -9.4 -2.85585 | opp_overlap 1208514 1208515, overlap 1208513 CATATTTGTCGAAAG CTGATAGA CCGG TCTATCAG TCATGTCTTTTAGCA TERM 1509 1208534 - 1208515 - G 70 -9.4 -2.72829 | opp_overlap 1208515 1208513, overlap 1208514 CATATTTGTCGAAAG CTGATAGA CCGG TCTATCAG TCATGTCTTTTAGCA TERM 1510 1208940 - 1208952 + g 72 -3.4 -5.07652 | AACTTGAAAAACGTC TCAG ATTAG CTGA TTTTGTTTTGAAAAG TERM 1511 1210263 - 1210240 - R 100 -10.4 -4.73613 | opp_overlap 1210243 CTATTAGTAAGAAAA GAACACAGTT TTTC AACTGCGTTC TAAACACTATGATTT valS 1212918 - 1210270 - | Valyl-tRNA synthetase TERM 1512 1210653 - 1210667 + g 73 -8.6 -3.72743 | CACTATCTGCTGTCT TCACCA AAA TGGTGA TTGGTTTTGATGGTG TERM 1513 1211696 - 1211679 - G 70 -8.5 -3.29096 | TGTACCAAGCAGGAA TTTGGTG CCCC CACCAAA GCTGACGCGAGATTA Spy49_1216c 1213483 - 1212920 - | hypothetical protein Spy49_1217c 1213659 - 1213480 - | hypothetical protein TERM 1514 1213760 - 1213771 + r 71 -3 -5.1764 | GCCGTTCTGTTTCCA CTTT GGGC AAAG TTTTTCTATTATATA TERM 1515 1213869 - 1213843 - R 100 -13.8 -4.17906 | opp_overlap 1213840 AATGAAACCAAATAA TCCCTGCCTAGA TAA CCTAGACAGGGA CGAATTTCGTGTTAC Spy49_1218c 1214481 - 1214086 - | hypothetical protein Spy49_1219c 1214753 - 1214499 - | hypothetical protein TERM 1516 1215002 - 1215029 + H 93 -7.1 -5.64274 | opp_overlap 1215002 GGCATCTATAAAAAA TACTGGCCTAA TAAGAT TTAGGGCAGTA TTTTTTTATAGCTAG TERM 1517 1215029 - 1215002 - H 89 -7.1 -5.28176 | opp_overlap 1215002 GGCATCTATAAAAAA TACTGGCCTAA TAAGAT TTAGGGCAGTA TTTTTTTATAGCTAG TERM 1518 1215266 - 1215280 + G 70 -3.6 -4.89477 | CTTTCAAAATAAGAC TTGTTC TAA GAATAA TTTTATTGTTGGACC aroA2 1215231 - 1215983 + | Phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1519 1217084 - 1217102 + G 90 -9.6 -4.33819 | opp_overlap 1217084 1217083, overlap 1217085 AAGACGATCACCAAT TTGTCGAG AAG CTCGACAG TTTATTATAAATAGT TERM 1520 1217085 - 1217101 + G 79 -10.9 -3.19568 | opp_overlap 1217084 1217083, overlap 1217084 AGACGATCACCAATT TGTCGAG AAG CTCGACA GTTTATTATAAATAG aroB 1216039 - 1217112 + | 3-dehydroquinate synthase TERM 1521 1217335 - 1217376 + T 93 -7.4 -5.54894 | opp_overlap 1217335 1217334 ATTTCGTCTAAAAAG CCTTAATGAGAAACCTAT AAGGAG ATAGGAAACTCATTAAGG TTTTTTTAGTGAATT TERM 1522 1217476 - 1217508 + T 74 -9.3 -3.10597 | opp_overlap 1217481, overlap 1217481 TCGCTTTGAATACGT AAAAAGAGAAGATGA GCG TCACCTTCTCTTTTG CTTTTCCATAGGCCA TERM 1523 1217503 - 1217481 - T 100 -11.4 -4.74706 | opp_overlap 1217476 1217481 TTGAATACGTAAAAA GAGAAGATGA GCG TCACCTTCTC TTTTGCTTTTCCATA TERM 1524 1217481 - 1217503 + T 100 -9.2 -4.68645 | opp_overlap 1217481, overlap 1217476 TTGAATACGTAAAAA GAGAAGATGA GCG TCACCTTCTC TTTTGCTTTTCCATA Spy49_1222c 1217853 - 1217548 - | Acetate kinase Spy49_1223c 1218193 - 1217855 - | hypothetical protein Spy49_1224c 1219001 - 1218246 - | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5 aroE1 1220114 - 1219236 - | Shikimate 5-dehydrogenase Spy49_1226c 1223668 - 1220252 - | Beta-galactosidase Spy49_1227c 1225172 - 1223688 - | Putative two-component sensor response regulator Spy49_1228c 1226896 - 1225172 - | Putative two-component sensor histidine kinase TERM 1525 1226061 - 1226050 - G 76 -4.4 -5.03994 | overlap 1226044 GGCCATACACAAAAA CTGT CCTG ACAG CTTCCGCTAATAAAT Spy49_1229c 1227491 - 1226886 - | hypothetical protein TERM 1526 1227768 - 1227749 - R 83 -7.8 -4.81212 | CTCATCAGAAGAAAA GAGCTGAG ATTT CCCAGCCC TCAACTTATAATCAA Spy49_1230c 1229242 - 1227797 - | ABC transporter, substrate-binding protein Spy49_1231c 1230249 - 1229323 - | ABC transporter, permease protein Spy49_1233c 1231209 - 1230259 - | Putative sugar-binding transport protein Spy49_1234 1231405 - 1232100 + | Putative transcriptional regulator TERM 1527 1232772 - 1232736 - T 78 -10.3 -2.71094 | AAGATGGATAGATGA TGCCAAACCAGACAGAA CGC TTATATCTAGTTCGGCA AATACCAACACCTTC TERM 1528 1232840 - 1232796 - T 78 -7.1 -4.42062 | opp_overlap 1232798, overlap 1232798 CACCTTCCAAAGAAA TACAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTGTT TAATCATTGGTAACA TERM 1529 1232838 - 1232798 - T 83 -9.7 -3.81557 | opp_overlap 1232798, overlap 1232796 CCTTCCAAAGAAATA CAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTG TTTAATCATTGGTAA Spy49_1235c 1234335 - 1232893 - | Beta-glucosidase hyl 1236053 - 1234359 - | Putative hyaluronidase TERM 1530 1235467 - 1235481 + g 70 -8.6 -3.38522 | overlap 1235466 ATCCCTTCTTCCTTG GCTACT GCA AGTAGC TCTTTGAAATAAGTC Spy49_1237c 1237144 - 1236104 - | Putative transcription regulator Spy49_1238 1237277 - 1238563 + | hypothetical protein Spy49_1239 1238578 - 1241283 + | Alpha-mannosidase TERM 1531 1241321 - 1241346 + T 95 -14.1 -3.28783 | opp_overlap 1241321, overlap 1241314 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA TERM 1532 1241346 - 1241321 - T 100 -11.9 -4.74453 | opp_overlap 1241314 1241321 TAACATATTCAAAAA GAGTCTGGGAC TATT GTCTCAGACTC TTAAGTTGATTTTGA Spy49_1240c 1242739 - 1241384 - | Histidine kinase TERM 1533 1241752 - 1241762 + g 74 -4 -5.10497 | TCGATACCTCAACCT TAAG CTT CTTA TTTTTTGCCTCAATT TERM 1534 1243131 - 1243142 + r 70 -4.4 -4.64846 | TGGTAATGTAACCTC CTGA CCAC TCAG TTTTCTAATTTATAG Spy49_1241c 1244760 - 1243405 - | RNA methyltransferase, TrmA family TERM 1535 1244369 - 1244386 + g 79 -5.5 -4.90266 | TGAAACTGCAATTTG GCCCGAT AGTG ATCTGGC TTTTTCATTCCTAAA recX 1244875 - 1245651 + | Regulatory protein recX Spy49_1243 1245731 - 1246264 + | hypothetical protein TERM 1536 1246442 - 1246415 - f 93 -11.4 -4.07568 | opp_overlap 1246411 1246409 1246408 TTCGTTGTGGTAAAA GTGGCGTCAA TGTTAATG TTGACGCCAC TTGGCATTTTTGAGC TERM 1537 1246549 - 1246536 - f 76 -3.9 -5.243 | GAAAGTATCAAAAAA TACTA AGTT TAGTA GCGAGGAAATCTCCG TERM 1538 1246775 - 1246765 - g 75 -5.4 -4.68724 | TCATTCAAGACAAAA CGAT ACC ATCG GCCTCAATCATCTTC Spy49_1244 1246634 - 1246912 + | hypothetical protein Spy49_1245 1246927 - 1247034 + | hypothetical protein TERM 1539 1247299 - 1247328 + T 100 -13.9 -4.98255 | opp_overlap 1247299 AAGAAACAATAAAAA GCTTAAATTTGTT GTAT AACAAATTTAAGC TTTTTATCATTAAAA TERM 1540 1247328 - 1247299 - T 100 -13.9 -5.44198 | opp_overlap 1247299 AAGAAACAATAAAAA GCTTAAATTTGTT GTAT AACAAATTTAAGC TTTTTATCATTAAAA TERM 1541 1250144 - 1250177 + T 71 -8.9 -3.03412 | overlap 1250138 1250143 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 1542 1250856 - 1250835 - T 75 -10.1 -2.58544 | opp_overlap 1250836, overlap 1250834 TCGCAGTCCTACAAC CCCGAGGAG TAAA CTCCTCGGT TTGCCCTCCTGCCGT TERM 1543 1250836 - 1250855 + T 100 -13.6 -3.62096 | opp_overlap 1250835 1250834 CGCAGTCCTACAACC CCGAGGAG TAAA CTCCTCGG TTTGCCCTCCTGCCG TERM 1544 1253117 - 1253131 + T 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC TERM 1545 1253624 - 1253637 + T 76 -3.9 -5.35815 | GCTATTATTTTTAGT TAGAA AAAA TTCTA TTTTTATTTGGTGTC TERM 1546 1253770 - 1253747 - T 95 -4.6 -6.20267 | opp_overlap 1253747 1253761 GGAAAAAGAAAAAAA CGCGCTTT ATATTCTG AAAACGCG CTTTTTCATATTTTT Spy49_1247c 1254548 - 1254000 - | Ribosomal subunit interface protein TERM 1547 1254565 - 1254577 + r 81 -9.1 -3.72621 | GGATACCTCTTTCTC GCGCT TGA AGCGC TTACTTTATCTTTAA comF 1255293 - 1254628 - | Putative late competence protein Spy49_1249c 1256590 - 1255265 - | Putative late competence protein required for DNA uptake TERM 1548 1256230 - 1256247 + gH 76 -2 -5.46698 | TTCCTGCACCAGTTA CAGCAT GAACTA ATGTTG TTTTTTGATTTTGCA Spy49_1250 1256646 - 1257278 + | hypothetical protein TERM 1549 1257295 - 1257329 + F 71 -5.2 -4.59376 | overlap 1257299 1257301 CATCAACAAAAGTGA TATGGCTTTATTATCA GAG TGATAGTAAATCTGTA TTTTACTTTAATAAT cysM 1257406 - 1258347 + | Cysteine synthase A TERM 1550 1258341 - 1258392 + T 88 -6.9 -5.02074 | gap 1, opp_overlap 1258352 1258354, overlap 1258352 ACCAGTAATTAAGAC GAA-ATAAAAAAGGGTTTGGAACT ACTAA GGTTCCAGACTCTTTTTAGTGTTC TTTTTTAAAAACTGC TERM 1551 1258352 - 1258380 + T 90 -8.2 -4.94672 | opp_overlap 1258352 1258354, overlap 1258341 AGACGAAATAAAAAA GGGTTTGGAACT ACTAA GGTTCCAGACTC TTTTTAGTGTTCTTT TERM 1552 1258380 - 1258352 - T 82 -3.1 -5.69793 | opp_overlap 1258352 1258341, overlap 1258354 AGACGAAATAAAAAA GGGTTTGGAAC TACTAAG GTTCCAGACTC TTTTTAGTGTTCTTT Spy49_1252c 1258742 - 1258365 - | Putative polyribonucleotide nucleotidyltransferase Spy49_1253c 1260142 - 1258742 - | Hydrolase, haloacid dehalogenase family/peptidyl-prolyl cis-trans isomerase, cyclophilin type Spy49_1254c 1260820 - 1260179 - | Putative two-component response regulator TERM 1553 1260687 - 1260667 - G 71 -4.8 -4.50058 | gap 1, overlap 1260661 1260670 GATCCATAACCAAAA CATCTGGCT TCAA AGCCA-ATG CCAAATCAACCCCTT Spy49_1255c 1261817 - 1260813 - | Putative two-component sensor histidine kinase Spy49_1256c 1262506 - 1261814 - | hypothetical protein TERM 1554 1262582 - 1262624 + r 78 -7.9 -4.21351 | opp_overlap 1262582, overlap 1262585 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCT AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT TERM 1555 1262624 - 1262582 - R 100 -10.1 -4.68994 | opp_overlap 1262582 1262585 ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCT AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT Spy49_1257c 1264527 - 1262629 - | Serine/threonine protein kinase pppL 1265264 - 1264524 - | Putative phosphoprotein phosphatase (pppL protein) TERM 1556 1265058 - 1265080 + g 71 -4.8 -4.63542 | overlap 1265060 TAACCAATCTCTAAT CTGACTTAAC TCT GTGAAGTCTG TTTTTACCCATTCTC TERM 1557 1265274 - 1265286 + r 73 -7.7 -3.79251 | CTTCATACGTTTTTT CTGAC TCA GTCAG TTTCCTCCTAAAATA sunL 1266624 - 1265302 - | Putative RNA-binding Sun protein TERM 1558 1265696 - 1265706 + g 70 -3.2 -4.84914 | TGACGATGAACCTCT CTGG CAT CTAG TTTTCTTGTCTCAAT fmt 1267549 - 1266614 - | Methionyl-tRNA formyltransferase priA 1269995 - 1267611 - | Arrested fork binding TERM 1559 1270064 - 1270042 - R 95 -8.6 -5.32699 | opp_overlap 1270042 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT TERM 1560 1270042 - 1270064 + r 87 -6.4 -5.4111 | opp_overlap 1270042 CTAAATATGAAAAAA TCTAAGATTT CTG AAACCTTAGA TTTTTTCTCCTTCTT Spy49_1263c 1270377 - 1270060 - | DNA-directed RNA polymerase omega subunit Spy49_1265c 1271028 - 1270393 - | Guanylate kinase TERM 1561 1270691 - 1270668 - G 93 -6.8 -5.40072 | overlap 1270674 GGGGGGTTAAAAAAA CAAAAACACC ATCT GGTACTTTTG ACTTAACCTGAAGAG TERM 1562 1270685 - 1270674 - G 84 -2.2 -5.86609 | overlap 1270668 TTAAAAAAACAAAAA CACC ATCT GGTA CTTTTGACTTAACCT TERM 1563 1271113 - 1271138 + r 89 -13.5 -2.74012 | opp_overlap 1271113 1271119, overlap 1271119 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1564 1271138 - 1271113 - R 100 -13.5 -3.98484 | opp_overlap 1271113 1271119, overlap 1271119 AAGGCAAGTCATAAA GAAAAAGAGGA TAAT TCCTCTTTTTC TACTTGGCATAATCA TERM 1565 1271119 - 1271132 + r 83 -6.7 -4.98255 | opp_overlap 1271113 1271119, overlap 1271113 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA TERM 1566 1271132 - 1271119 - R 85 -6.7 -5.38958 | opp_overlap 1271119 1271113, overlap 1271113 AGTCATAAAGAAAAA GAGGA TAAT TCCTC TTTTTCTACTTGGCA Spy49_1266c 1272745 - 1271138 - | hypothetical protein TERM 1567 1272255 - 1272277 + g 78 -2.8 -5.36965 | gap 1 TCTGCAATCGTCATC GCAGCAACT TTTTCC AGTT-CTGC TTTTTTCTCCTCTTC TERM 1568 1272901 - 1272888 - R 74 -2.4 -5.47218 | TCCTACTTAAAAAAA GACT GTAGCA AGTC GTCCATGATGTAGGC Spy49_1267c 1273771 - 1272875 - | Putative transcriptional regulator TERM 1569 1273887 - 1273872 - H 77 -3.4 -5.52986 | opp_overlap 1273884 ACTCTATCAAAAAAA TTTATA TGCT TATAAA AATTCTATATTTTTA atoB 1273972 - 1275159 + | Acetyl-CoA acetyltransferase TERM 1570 1275500 - 1275511 + G 73 -7.2 -4.13767 | ATTAGCTGAGCGCAT CCGC AGTG GCGG TTTTGGGCTAGGCGG atoD1 1275183 - 1275833 + | Putative acetyl-CoA:acetoacetyl-CoA transferase A subunit atoA 1275835 - 1276494 + | Putative acetyl-CoA:acetoacetyl-CoA transferase b subunit TERM 1571 1277148 - 1277131 - g 75 -7.7 -4.09511 | overlap 1277134 AAGACCTTTCCAAAA CAAGAGG TATT CCCCTTG AAAATGTTCTTGAAG Spy49_1271 1276527 - 1277306 + | Putative oxidoreductase Spy49_1272 1277377 - 1278708 + | Putative permease luxS 1278782 - 1279264 + | Ribosylhomocysteinase / Autoinducer-2 production protein LuxS TERM 1572 1279371 - 1279394 + T 100 -8.2 -6.31682 | opp_overlap 1279371 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTTTGATTTT TERM 1573 1279394 - 1279371 - T 100 -10.4 -5.30155 | opp_overlap 1279371 TTATTAATCAAAAAA CTGAGACAAG TTGC CTTATCTCAG TTTTTTTTTGATTTT Spy49_1274c 1280880 - 1279411 - | hypothetical protein TERM 1574 1280620 - 1280634 + g 70 -2.8 -5.16237 | AAGACCGGCTTTACT CAATGA TTC TCTTTG TTTTTTGATAAAGTT Spy49_1275c 1282048 - 1280894 - | hypothetical protein TERM 1575 1281519 - 1281529 + g 79 -6.8 -4.57073 | ATATTTTCCTTGATC GGTG CTC CACC TTTTTGAACGCGATA TERM 1576 1282092 - 1282077 - R 95 -9 -5.04868 | TTAAATCAAATAAAA GCTAGC AAGT GCTAGC TTAACCTATTATGCA Spy49_1276c 1282819 - 1282493 - | hypothetical protein Spy49_1277c 1283456 - 1282947 - | hypothetical protein TERM 1577 1283077 - 1283063 - G 75 -2.8 -5.24129 | opp_overlap 1283063 CTGTGTCATAAAAAA CATAAG CCC CTTCTG TCTTTTCTAATAAAA TERM 1578 1283792 - 1283760 - g 82 -7.8 -4.57569 | GCAGTCGGGCAAAAA TCGTTGAAGCGTAC TTTAG ACAAGCTTCAACGA CTGACTATTGCGGCG recU 1283537 - 1284145 + | Recombination protein U-like protein pbp1A 1284132 - 1286297 + | Multimodular transpeptidase-transglycosylase TERM 1579 1286429 - 1286380 - T 85 -10.3 -3.42354 | gap 1, opp_overlap 1286392, overlap 1286392 TACCTTAAGTGATAA TCTAAATAAAAAGCGAGTCCAC GTTCTGT GAGGACTCGCTTTTTATAT-GA CACAAATGACTTACC TERM 1580 1286418 - 1286392 - T 100 -9.4 -5.33026 | opp_overlap 1286392, overlap 1286380 TAATCTAAATAAAAA GCGAGTCCAC GTTCTGT GAGGACTCGC TTTTTATATGACACA TERM 1581 1286392 - 1286418 + T 100 -10.8 -4.96848 | opp_overlap 1286392 1286380 TAATCTAAATAAAAA GCGAGTCCACGT TCT GTGAGGACTCGC TTTTTATATGACACA TERM 1582 1286492 - 1286472 - T 89 -8.5 -4.29034 | AAACAAAAAACAGAA TTCTTTAAT CGT ATTAAAGAA AAGGTACAACGTTAA TERM 1583 1286614 - 1286638 + T 70 -2.1 -5.24989 | opp_overlap 1286614 TATACATGAAAAAAA CACGTTTCC ATATACC GAAGACGTG TTTTTTCATATGTCA TERM 1584 1286638 - 1286614 - T 80 -2.8 -5.60864 | opp_overlap 1286614 TATACATGAAAAAAA CACGTTTCCA TATAC CGAAGACGTG TTTTTTCATATGTCA pepC 1288101 - 1286764 - | Aminopeptidase C TERM 1585 1288223 - 1288254 + r 79 -3.8 -5.57888 | opp_overlap 1288231 1288233, overlap 1288231 1288233 ATTTGATTTTCTTCA AGAAAAAAGGTAGG ATAA CCTAACTTTTTTTG TTTTCTTTTTTTACT TERM 1586 1288246 - 1288231 - R 77 -3.2 -5.4505 | opp_overlap 1288223 1288231 1288233, overlap 1288233 TTCTTCAAGAAAAAA GGTAGG ATAA CCTAAC TTTTTTTGTTTTCTT TERM 1587 1288231 - 1288246 + r 95 -3.2 -6.17669 | opp_overlap 1288231 1288233, overlap 1288223 1288233 TTCTTCAAGAAAAAA GGTAGG ATAA CCTAAC TTTTTTTGTTTTCTT nadE 1289134 - 1288286 - | NAD synthetase TERM 1588 1288510 - 1288500 - G 71 -6.8 -4.03413 | ACTTTTTCATACAAA GCAG CAT CTGC TCCTAAAACTTTCAA Spy49_1282c 1290566 - 1289112 - | Nicotinate phosphoribosyltransferase TERM 1589 1289604 - 1289624 + g 76 -9.1 -3.72576 | AGCACCTAAGGCAGG CTGATCATA GGC TGTGATCAG TTTGGTCCCAACACC aapA 1292116 - 1290737 - | Amino acid permease nox2 1293202 - 1292285 - | Thioredoxin reductase Spy49_1285c 1293490 - 1293266 - | hypothetical protein TERM 1590 1293579 - 1293537 - R 70 -3.7 -5.00884 | gap 1, overlap 1293550 AGTTTTTCTAAAAAA CATAACAAGAAAAGCCCAGG GATA CCTAGACCTTT-TTATTATA ACAAAAGAATAACAT TERM 1591 1293567 - 1293550 - R 77 -5.5 -4.99312 | overlap 1293537 AACATAACAAGAAAA GCCCAGG GATA CCTAGAC CTTTTTATTATAACA Spy49_1286c 1294337 - 1293594 - | Amino acid ABC transporter, ATP-binding protein Spy49_1287c 1295140 - 1294337 - | Putative amino acid ABC transproter Spy49_1289c 1296678 - 1295335 - | Putative ATP-dependent RNA helicase TERM 1592 1296156 - 1296135 - G 72 -10.3 -2.62396 | TAGTTGCTGAGACCA CCAAAATCT GAAC AGATTTTGG AAGCGAAGCTGCAAT mraY 1297846 - 1296836 - | Phospho-N-acetylmuramoyl-pentapeptide- transferase ftsI 1300103 - 1297848 - | Cell division protein ftsI / Peptidoglycan synthetase TERM 1593 1299004 - 1299022 + g 73 -7.4 -4.10672 | opp_overlap 1299004, overlap 1298997 TCTGCAATTGTTAAA CCATTAGC ATT GCTAAAGG TTTCGTTTGGGTTGA ftsL 1300430 - 1300107 - | Cell division protein ftsL TERM 1594 1300352 - 1300372 + g 75 -2.5 -5.30199 | opp_overlap 1300352, overlap 1300354 TAGCAGCATAAAAAG CCTTCTCAA TTC TAGAGAAAG TTTTTATTCGTTTTT mraW 1301385 - 1300435 - | S-adenosyl-methyltransferase mraW TERM 1595 1300872 - 1300896 + g 71 -6.5 -4.19624 | overlap 1300890 CTCTTGCTTGTTCAA TTTTTCGAGCA ATC TGCTTGGAGAA TTTATCTTCACCATA TERM 1596 1301293 - 1301270 - G 82 -8.8 -4.27512 | overlap 1301267 TTGGACAACAAATAA GCTGAGTGGC CTGA GCCACCTAGC GTCGCATCAACATAA Spy49_1294c 1301942 - 1301736 - | hypothetical protein TERM 1597 1301804 - 1301786 - GR 76 -2.4 -5.42259 | CCATCTCCAAAAAAA CAAAATAG CCC CAATTTCG GACAATTTTCAATTC TERM 1598 1301860 - 1301870 + gr 70 -5.4 -4.37863 | opp_overlap 1301860, overlap 1301857 AAAAGTTCTTCTAAA GCAA CCT TTGC TTCTTCTTTTTCTCT proA 1303167 - 1301917 - | Gamma-glutamyl phosphate reductase proB 1303981 - 1303160 - | Glutamate 5-kinase TERM 1599 1304018 - 1304003 - R 83 -6.8 -4.95758 | opp_overlap 1304003, overlap 1303997 ATTATAGCATAAAAA CAGCCC CAGA GGACTG TTTTTCCGAATAATG Spy49_1297c 1305673 - 1304045 - | hypothetical protein TERM 1600 1305509 - 1305499 - G 76 -3.2 -5.28414 | CAATAAACATAAAAA GGTA AAT CACC AAAAACATGGCAATC Spy49_1298c 1306412 - 1305678 - | Putative ABC transporter Spy49_1299c 1306712 - 1306446 - | hypothetical protein TERM 1601 1306863 - 1306888 + r 100 -13.5 -3.65425 | opp_overlap 1306863 TTTATTTTAAAAAAA CAGAGTAAATC AAAT GATTTACTCTG TTTGGGATGTGTAAC TERM 1602 1306888 - 1306863 - R 100 -13.5 -5.44119 | opp_overlap 1306863 TTTATTTTAAAAAAA CAGAGTAAATC AAAT GATTTACTCTG TTTGGGATGTGTAAC tkt 1308889 - 1306904 - | Transketolase TERM 1603 1309097 - 1309073 - R 80 -7.1 -4.60258 | opp_overlap 1309071 1309073 1309088 CTATCAAATAAGAAA GTCTGTTGACA CGT TGGCCACAGAC TCTTTAGCCTTATTT tal 1309751 - 1309107 - | FSA aldolase TERM 1604 1309655 - 1309639 - G 71 -6.6 -4.10007 | ATAACTGTTTCAAAA TCACGT CCTTC ACGTGA GATAATGGTTGGATT Spy49_1303c 1311376 - 1309877 - | Putative transcriptional regulatory protein TERM 1605 1309984 - 1309974 - G 70 -5.4 -4.37092 | AGGTCTTTGAGAAAA GCTT CTA AAGC AGTGAGTTCATAGGG npx 1312712 - 1311366 - | Putative NADH peroxidase TERM 1606 1311991 - 1311977 - G 70 -8.6 -3.27525 | overlap 1311989 TTGGTCTAAAGTTAA TGGCTA AAA TAGCCA AATCACCTTGGAAGG TERM 1607 1312809 - 1312784 - R 73 -6.9 -4.02396 | gap 1, opp_overlap 1312784, overlap 1312780 TAAAGAAAATGCAAA GGAGCTGGCCTA TGA TA-GCCAACCCC TTTAGTGATGGTTAG glpF1 1313522 - 1312821 - | Glycerol uptake facilitator protein glpO 1315362 - 1313524 - | Aerobic glycerol-3-phosphate dehydrogenase TERM 1608 1313577 - 1313589 + g 73 -7.7 -3.80174 | overlap 1313580 TGTCTGCAATCACGC GACGA AGA TCGTC TTCTTGTGCCACTCT glpK 1316904 - 1315378 - | Glycerol kinase TERM 1609 1317154 - 1317113 - R 100 -13.2 -4.81644 | opp_overlap 1317123 CAAAGAAAATCAAAA GACCCAACAATCACTCTG CTAATC CAGAGTCATCATTGGGTC ATAAAGAGAACTAAG Spy49_1308c 1317656 - 1317264 - | hypothetical protein TERM 1610 1317774 - 1317760 - R 82 -4.2 -5.40464 | opp_overlap 1317754 1317760, overlap 1317754 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTTGTCTTATGA TERM 1611 1317760 - 1317774 + r 87 -6.4 -5.5208 | opp_overlap 1317760 1317754, overlap 1317754 CACGATAAACAAAAA GCAGTT CAG AGCTGC TTTTTTGTCTTATGA Spy49_1309c 1318041 - 1317784 - | hypothetical protein glyS 1320234 - 1318195 - | Glycyl-tRNA synthetase beta chain TERM 1612 1320528 - 1320550 + r 73 -7.6 -3.74762 | overlap 1320529 CGGGAGTAACCTTGA CTCGGCGACC TTC GGTCGCCCAC TTCTTGCTCGCTCTT TERM 1613 1320529 - 1320549 + r 81 -11.1 -2.84134 | overlap 1320528 GGGAGTAACCTTGAC TCGGCGACC TTC GGTCGCCCA CTTCTTGCTCGCTCT glyQ 1321523 - 1320606 - | Glycyl-tRNA synthetase alpha chain TERM 1614 1321687 - 1321638 - R 100 -17.3 -5.1675 | overlap 1321684 CTAGGCACCAAAAAA CCGCATTTTGATGCTCCTAAATC ATAA GACCTAGGGGCGTCAAAACGCGG TTCCCACCCTAATTT Spy49_1312c 1322402 - 1321896 - | hypothetical protein TERM 1615 1322233 - 1322221 - G 75 -2.7 -5.19916 | overlap 1322222 AAAAGACCTAAAAAA CTGAT GCC ATCAA ACTTAATTTGTTTAA TERM 1616 1322341 - 1322351 + g 72 -3.2 -5.10877 | overlap 1322330 TCCTGTCCTCCTTGG GCTA ATA TGGC TTTTTCATTTGTTAT TERM 1617 1322526 - 1322549 + r 71 -6.8 -4.20981 | opp_overlap 1322526 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTACTTTCTTAA TERM 1618 1322549 - 1322526 - R 83 -6.8 -5.00884 | opp_overlap 1322526 ACCGTTTTCAAAAAA GATTTAGCGA ATTA TGGCTAAATC TTTGTACTTTCTTAA Spy49_1313c 1323400 - 1322561 - | 2,5-diketo-D-gluconic acid reductase TERM 1619 1323517 - 1323470 - R 70 -2 -5.22481 | CATAAAGAAAGAAAA TACAAAAAGAATTGGCCTGCCA GACA TAGCTACCCCAATCCTTTTGTA TCTCTTAGGCATCAA nagA 1324670 - 1323522 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1620 1324750 - 1324781 + r 84 -5.2 -5.42259 | opp_overlap 1324752, overlap 1324752 TTTTTGGATTCAAAA AAGAAAACGTGGAT GATC ATTCCCGTTTTCTC TTTTTTTAAAGCTGG TERM 1621 1324752 - 1324779 + r 81 -7.8 -4.35085 | opp_overlap 1324752, overlap 1324750 TTTGGATTCAAAAAA GAAAACGTGGAT GATC ATTCCCGTTTTC TCTTTTTTTAAAGCT TERM 1622 1324779 - 1324752 - R 79 -5.6 -5.08824 | opp_overlap 1324750 1324752 TTTGGATTCAAAAAA GAAAACGTGGAT GATC ATTCCCGTTTTC TCTTTTTTTAAAGCT Spy49_1316c 1326418 - 1324787 - | Putative Sodium-dependent phosphate transporter TERM 1623 1326378 - 1326365 - G 72 -4.5 -4.70515 | GATACTGAAAAGAAA GAGAC CTAA GCCTC CAAAGAAATGAAATG Spy49_1318c 1328311 - 1327469 - | hypothetical protein TERM 1624 1327671 - 1327681 + g 100 -6.8 -5.75342 | opp_overlap 1327671, overlap 1327657 ATTTCTTCTATCAAA GCAG AAA CTGC TTTTTTTTGACCACG TERM 1625 1328682 - 1328665 - g 80 -6.3 -4.70117 | gap 1 AATTTAATAAAGAAA CACGACGC ATA GC-TCGTG AATCTATGGAAATCG TERM 1626 1328903 - 1328884 - g 78 -7.2 -4.35518 | gap 1, opp_overlap 1328882 1328879 1328884 1328885, overlap 1328885 1328886 1328888 AATTTGATATTAAAA CTCAGGCTT ATC AAGCCTG-G CTCTATCTTTTTACT TERM 1627 1328885 - 1328903 + G 70 -9.6 -2.60234 | opp_overlap 1328884 1328885 1328886 1328888, overlap 1328884 1328882 1328879 ATTTGATATTAAAAC TCAGGCTT ATC AAGCCTGG CTCTATCTTTTTACT TERM 1628 1328902 - 1328886 - g 76 -10.9 -2.51871 | opp_overlap 1328885 1328884 1328882 1328879, overlap 1328884 1328885 1328888 TTTGATATTAAAACT CAGGCTT ATC AAGCCTG GCTCTATCTTTTTAC TERM 1629 1328943 - 1328931 - g 88 -7.7 -5.16572 | ACTGAAGCTAAAAAA GAAGC TCA GCTTC TTAAAATGATTTTCA Spy49_1319 1328604 - 1329161 + | Transcriptional regulator, TetR family TERM 1630 1329165 - 1329181 + T 95 -8.7 -5.74122 | opp_overlap 1329165 CTATTAACGTAAAAA GGTTCCT TTT GGGAACC TTTTTTTATATAATA TERM 1631 1329181 - 1329165 - T 86 -8 -4.7629 | opp_overlap 1329165 CTATTAACGTAAAAA GGTTCC TTTTG GGAACC TTTTTTTATATAATA Spy49_1320c 1330022 - 1329198 - | hypothetical protein Spy49_1321c 1330641 - 1330024 - | hypothetical protein TERM 1632 1330761 - 1330733 - R 100 -11.2 -5.37345 | opp_overlap 1330737 TGTAAGGATAAAAAA GCAAGGATAAAA CCCAT TTTCATCCTTGC TACAAGAGATTCAAA lacD1 1331815 - 1330838 - | Tagatose 1,6-diphosphate aldolase lacC1 1332160 - 1331897 - | Tagatose-6-phosphate kinase / 1- phosphofructokinase Spy49_1324c 1332315 - 1331965 - | Tagatose-6-phosphate kinase / 1- phosphofructokinase lacB 1332840 - 1332325 - | Galactose-6-phosphate isomerase lacB subunit TERM 1633 1332540 - 1332526 - G 77 -8.6 -3.79251 | opp_overlap 1332525 GATTTTACCACCAAA GCCAAT CAC ATTGGC ATTCAATTCTTCCTT lacA 1333280 - 1332855 - | Galactose-6-phosphate isomerase lacA subunit TERM 1634 1333346 - 1333325 - R 70 -3.7 -4.91712 | opp_overlap 1333327 1333330 1333338, overlap 1333327 1333330 GCCAATCTACAAAAA GATAACAGG ATTA CCTGTCATT AGGTCAGGATTATTG TERM 1635 1333432 - 1333400 - R 77 -10 -3.02144 | gap 1, opp_overlap 1333398, overlap 1333404 TTATTTCTTTCAAGA CAAAGCACT-TGTGG GTTC CCACAGAGCGCCTTG CCTTACATGAGAAAT TERM 1636 1333428 - 1333404 - R 75 -7.2 -4.1891 | gap 1, opp_overlap 1333398, overlap 1333400 TTCTTTCAAGACAAA GCACT-TGTGG GTTC CCACAGAGCGC CTTGCCTTACATGAG Spy49_1327c 1334989 - 1333538 - | Putative PTS system, enzyme IIC component Spy49_1328c 1335320 - 1335015 - | PTS system, IIB component, putative Spy49_1329c 1335786 - 1335313 - | Putative PTS system, enzyme IIA component TERM 1637 1335583 - 1335611 + g 73 -10.4 -2.88427 | CAAGCAATACTTGGT TTCTGTATGCGG AATAG CCGCATACAAAA TATCTGACCCATCTT TERM 1638 1336640 - 1336629 - g 72 -4.4 -4.67011 | overlap 1336632 AATTCTATTGAAAAA TACC TCTT GGTA GATAACCAAAAATTC lacR1 1336023 - 1336793 + | Lactose phosphotransferase system repressor copZ 1337200 - 1336997 - | Putative copper chaperone-copper transport operon copA 1339445 - 1337214 - | Putative copper-transporting ATPase TERM 1639 1337520 - 1337541 + g 73 -10.1 -2.78547 | overlap 1337516 AGCTATCCCGATGTC TGCTACGGC CAAT GCCGGAGCA TCATTAATACCATCA TERM 1640 1339188 - 1339210 + g 77 -8.4 -3.80569 | overlap 1339174 1339190 AGACCAAATAACCTT TAGGTCTTCG TCA CGACGACCTG TTTGCATGTGTTTTG TERM 1641 1339190 - 1339208 + g 72 -8.8 -3.46904 | overlap 1339174 1339188 ACCAAATAACCTTTA GGTCTTCG TCA CGACGACC TGTTTGCATGTGTTT copY 1339882 - 1339445 - | Negative transcriptional regulator, CopY Spy49_1335 1340045 - 1341046 + | Putative esterase TERM 1642 1341089 - 1341057 - T 100 -9.4 -5.95286 | gap 1, opp_overlap 1341057 ACTAAAAACAAAAAA CCCTTAAGGTGATCT AATA AGAT-ACCTTAAAGG TTTTTAATTTAATCT TERM 1643 1341057 - 1341089 + T 88 -7.2 -5.02715 | gap 1, opp_overlap 1341057 ACTAAAAACAAAAAA CCCTTAAGGTGATCT AATA AGAT-ACCTTAAAGG TTTTTAATTTAATCT rbfA 1341448 - 1341098 - | Ribosome-binding factor A TERM 1644 1341360 - 1341376 + g 73 -2.1 -5.24531 | overlap 1341361 1341362 ATGGTTACTCCCTGA ACGCGTG GAT CACGCAC TTTTTTCTGAAGAAT TERM 1645 1341504 - 1341476 - R 100 -12.5 -4.13014 | opp_overlap 1341481, overlap 1341481 TCCACATTTTTAAAA CAAAAGCTAGGCT GAA AGCCCAGCTTATG ACATTGCTACCTGTT TERM 1646 1341499 - 1341481 - R 100 -11 -5.08255 | opp_overlap 1341481, overlap 1341476 ATTTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGCTAC TERM 1647 1341481 - 1341499 + r 75 -8.8 -3.37464 | opp_overlap 1341476 1341481 ATTTTTAAAACAAAA GCTAGGCT GAA AGCCCAGC TTATGACATTGCTAC infB 1344515 - 1341654 - | Translation initiation factor 2 TERM 1648 1342363 - 1342376 + g 84 -8.1 -4.72986 | GATCGCTCCTCACCA GCTGC ACGC GCAGC TTTTTCATCAGCGTA Spy49_1338c 1344837 - 1344535 - | ribosomal protein L7Ae family protein Spy49_1339c 1345126 - 1344830 - | Predicted nucleic-acid-binding protein nusA 1346299 - 1345142 - | Transcription termination protein NusA Spy49_1341c 1347010 - 1346474 - | transcription termination protein NusA-like protein TERM 1649 1347043 - 1347022 - R 93 -8.7 -4.68724 | opp_overlap 1347022 1347012 CCACTTAATACAAAA GTGGCGAGA CATA TCCCACCAC CTTTCTGTATTATTT Spy49_1342c 1347904 - 1347269 - | tRNA(m7G46)-methyltransferase TERM 1650 1347437 - 1347447 + g 73 -6.8 -4.15854 | GTACTCAAACAAGCC CCGA TTA TCGG TTTTAAAATGAATTT Spy49_1343c 1348695 - 1347904 - | hypothetical protein Spy49_1344c 1349793 - 1348759 - | Putative ABC transporter Spy49_1345c 1350521 - 1349796 - | ABC transporter, ATP-binding protein TERM 1651 1350746 - 1350775 + G 100 -14.5 -3.8505 | gap 1, opp_overlap 1350748 1350750 GTTCGTAACTTACTA GAGATGACT-GCTG AGA CAGCTAGTCATCTC TTTGCTCGTATTCCT TERM 1652 1350773 - 1350748 - g 80 -11.3 -2.82933 | gap 1, opp_overlap 1350746, overlap 1350750 TCGTAACTTACTAGA GATGACT-GCTG AGA CAGCTAGTCATC TCTTTGCTCGTATTC hit 1350593 - 1351012 + | Putative cell-cycle regulation histidine triad (HIT) protein Spy49_1347 1351009 - 1351365 + | hypothetical protein TERM 1653 1351426 - 1351401 - T 74 -9.1 -3.01497 | opp_overlap 1351401, overlap 1351403 1351405 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1654 1351401 - 1351426 + T 100 -9.1 -5.47159 | opp_overlap 1351401 1351403 1351405 TTATTTGAAATCACA GACAGCTATCA TCTT TGATACCTGTC TTTTTTATATTCAAA TERM 1655 1351465 - 1351488 + T 87 -11 -3.36273 | opp_overlap 1351465 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA TERM 1656 1351488 - 1351465 - T 100 -11 -5.19879 | opp_overlap 1351465 TTTTAAACATAAAAA CCCTCAGAAC GTTA GGTCTGAGGG TTGATATTAGCAGGA Spy49_1348c 1352759 - 1351476 - | Putative transcription regulator Spy49_1349c 1353292 - 1352768 - | Histone acetyltransferase Spy49_1350c 1353728 - 1353267 - | hypothetical protein TERM 1657 1353780 - 1353753 - R 91 -2.8 -6.00086 | gap 1, overlap 1353757 ATATCAGAAAAAAAA CATACTTCCAAGC ACT ACCTAGAAG-ATG ACTCCAATAAGGTAT TERM 1658 1353849 - 1353810 - R 70 -3.9 -4.98531 | gap 1 TTCGTAAAGTAAAAA CGCTTCTTTATATTAA AGGTTAAAA TCAAT-TAAAGAAGCG GCAGTTAGTAGCAAA Spy49_1351c 1355342 - 1353882 - | hypothetical protein TERM 1659 1355406 - 1355386 - H 71 -3.4 -5.10154 | gap 1, opp_overlap 1355387 1355389, overlap 1355387 1355389 AGGTAAAATCAAAAA GCACTTATC ACTA GATAAGT-C TTTTTGACACCTCAT Spy49_1352 1355607 - 1356002 + | hypothetical protein Spy49_1353 1356019 - 1356420 + | hypothetical protein TERM 1660 1356433 - 1356456 + F 95 -9 -5.24796 | opp_overlap 1356433 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTTTTCTTCTGTCAA TERM 1661 1356456 - 1356433 - f 71 -6.8 -4.11623 | opp_overlap 1356433 TAGTAGCAAACGAAA CCACTATTTT TCAG AAAATGGTGG TTTTTCTTCTGTCAA manL 1356772 - 1357764 + | Putative mannose-specific phosphotransferase system component IIAB manM 1357853 - 1358662 + | PTS system, mannose-specific IIC component TERM 1662 1359054 - 1359064 + G 71 -6.8 -4.0098 | CGTCCTATCCTTGGG GCAC TTG GTGC TTCTTTGGCTTCAAC manN 1358679 - 1359590 + | Putative mannose-specific phosphotransferase system component IID TERM 1663 1359601 - 1359625 + F 100 -10.8 -5.43621 | opp_overlap 1359600 1359604 TGTAATCAACCAATG GAAGTCTGAG ATGAA CTCAGGCTTC TTTTTTATGCTTTAT Spy49_1357 1359704 - 1360063 + | hypothetical protein serS 1360454 - 1361731 + | Seryl-tRNA synthetase TERM 1664 1361769 - 1361740 - T 81 -10.8 -2.82317 | opp_overlap 1361740, overlap 1361737 1361736 TAAATAATAAACTCA CCCCAGAGATCA TTAAAG TGATTTCTGGGG TTTACTATTTTAAAG TERM 1665 1361740 - 1361769 + T 100 -13.7 -4.07678 | opp_overlap 1361740 1361737 1361736 TAAATAATAAACTCA CCCCAGAGATCAT TAAA GTGATTTCTGGGG TTTACTATTTTAAAG TERM 1666 1361991 - 1361979 - T 73 -7.7 -3.7948 | opp_overlap 1361979 TTAATATTTACGAAA GCGTT GGT AACGC TCATCTAATAATTGG accA 1362734 - 1361964 - | Acetyl-coenzyme A carboxyl transferase alpha chain TERM 1667 1362633 - 1362622 - G 73 -5.8 -4.63527 | CCATCATCTGAAAAA TGGC GATC GCCA TGCAGTTCCATAAAG accD 1363597 - 1362731 - | Acetyl-coenzyme A carboxyl transferase beta chain accC 1364970 - 1363606 - | Biotin carboxylase of acetyl-CoA carboxylase fabz 1365424 - 1365002 - | (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase TERM 1668 1365118 - 1365142 + g 70 -2.8 -5.09426 | AGGTTGCTGTCATCA CAAGTTGATC ACCAG GGACGACTTG TTTTTTGAACTTCAC accB 1365921 - 1365421 - | Biotin carboxyl carrier protein of acetyl-CoA carboxylase TERM 1669 1365747 - 1365783 + g 95 -13.1 -3.59402 | opp_overlap 1365753, overlap 1365750 AAGCAGTTGGATTCG GAACAAGTTGTACCTGT GGT ACAGGCACAGCATGTTC TTGATTTGATGTCGA TERM 1670 1365750 - 1365780 + g 79 -9 -3.92143 | opp_overlap 1365753, overlap 1365747 CAGTTGGATTCGGAA CAAGTTGTACCTGT GGT ACAGGCACAGCATG TTCTTGATTTGATGT TERM 1671 1365777 - 1365753 - G 76 -9.3 -3.63515 | opp_overlap 1365750 1365747 TTGGATTCGGAACAA GTTGTACCTGT GGT ACAGGCACAGC ATGTTCTTGATTTGA fabF 1367155 - 1365923 - | 3-oxoacyl-(acyl-carrier-protein) synthase, KASII fabG 1367904 - 1367170 - | 3-oxoacyl-(acyl-carrier protein) reductase fabD 1368832 - 1367894 - | Malonyl CoA-acyl carrier protein transacylase fabK 1369828 - 1368857 - | Enoyl-(acyl-carrier-protein) reductase (FMN) acpP2 1370253 - 1370029 - | Acyl carrier protein TERM 1672 1370306 - 1370294 - R 73 -7.7 -3.85817 | ATTTGTTTTTATAAA TGTGC TAG GCACA TGAATAACTAGATTT fabH 1371288 - 1370314 - | 3-oxoacyl-(acyl-carrier-protein) synthase, KASIII TERM 1673 1371121 - 1371068 - G 77 -5 -5.00467 | gap 3, overlap 1371072 1371074 1371077 1371105 GCAACAATAATAAAA TCAA-TAGC--ATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGATCAGCAACCTGA ATAGCTAGGTCACTA TERM 1674 1371112 - 1371072 - G 83 -9.4 -3.87952 | gap 2, overlap 1371068 1371074 1371077 1371105 CAATAATAAAATCAA TAGCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C-A GCAACCTGAATAGCT TERM 1675 1371111 - 1371074 - G 100 -14.5 -3.4959 | gap 1, overlap 1371072 1371068 1371077 1371105 ATAATAAAATCAATA GCATCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGAT-C AGCAACCTGAATAGC TERM 1676 1371109 - 1371077 - G 100 -17.3 -2.86186 | overlap 1371074 1371072 1371068 1371105 ATAAAATCAATAGCA TCAGCTTTTAACCCA GAC TGAGTTAAAAGCTGA TCAGCAACCTGAATA Spy49_1370c 1371723 - 1371289 - | Putative transcriptional regulator phaB 1372588 - 1371797 - | Trans-2,cis-3-Decenoyl-ACP isomerase TERM 1677 1372162 - 1372146 - G 84 -7.9 -4.68511 | overlap 1372147 GTCAATAGAAATAAA CCACCGG CAT CCGGTGC TAGTCCAACATTTAC TERM 1678 1372161 - 1372147 - G 85 -11.4 -3.40022 | overlap 1372146 TCAATAGAAATAAAC CACCGG CAT CCGGTG CTAGTCCAACATTTA TERM 1679 1372798 - 1372763 - R 93 -5.5 -6.02914 | opp_overlap 1372763 TTGACATAAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAGATTATACG TTTGACATCTTTAAA TERM 1680 1372763 - 1372798 + r 71 -7.7 -3.695 | opp_overlap 1372763 TTGACATAAAAAAAA CGTATAACTTCGGGA AAATTA TCCTGAGATTATACG TTTGACATCTTTAAA dnaJ 1373945 - 1372809 - | heat-shock (chaperone) DnaJ protein TERM 1681 1372999 - 1373020 + g 70 -5.9 -4.33907 | gap 1, overlap 1372985 CGGAGTTTTGGTGCT CCTTT-GCCT TTG AGGCGGAAGG TTTTACCTGTTTGTG TERM 1682 1373604 - 1373590 - G 73 -8.6 -3.64866 | opp_overlap 1373584, overlap 1373578 ACACGATATTGCAAA TCGTCA CCT TGACGA GGGGCATTTGGGTTT TERM 1683 1374093 - 1374108 + G 71 -7.6 -3.82605 | CACGCTTTAGCCTGT GTTCGA ATAA TCGAAC TTGTATTCCTTTCTT TERM 1684 1374190 - 1374169 - g 88 -8.8 -4.67353 | opp_overlap 1374162 1374159 1374171 TTATTTAGCCAAAAA CAGAGGTT TGGTAC AACCTCTG AATTCGGATATTAAT Spy49_1373 1374008 - 1374217 + | hypothetical protein dnaK 1376052 - 1374226 - | Chaperone protein dnaK grpE 1376805 - 1376233 - | putative Hsp-70 cofactor GrpE protein TERM 1685 1376717 - 1376727 + g 71 -6.8 -4.03888 | GTCTCTTCAGTTTCA GTGG CTT CCAC TTCTTCTTGTAAATC hrcA 1377851 - 1376808 - | Heat-inducible transcription repressor hrcA TERM 1686 1377865 - 1377891 + r 71 -6.7 -4.14004 | ACCACTCCCTTTCGT TTAGCACTCTA ATTAG TAGACTGCTAA TTTATAATTCTATTA TERM 1687 1377985 - 1377939 - R 91 -4.6 -5.80364 | opp_overlap 1377949, overlap 1377949 ATGTCAAGAAAAAAA CTCAAAAAAATTAGCACTCTTT TAT AAAGAGTGCTAATTTCAGTCAT AGTTTGTTAAATCGT TERM 1688 1377949 - 1377975 + r 100 -15.4 -3.70438 | opp_overlap 1377939 1377949 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGTGCTAA TTTCAGTCATAGTTT TERM 1689 1377975 - 1377949 - R 100 -15.4 -5.63857 | opp_overlap 1377949, overlap 1377939 AAAAACTCAAAAAAA TTAGCACTCTTT TAT AAAGAGTGCTAA TTTCAGTCATAGTTT Spy49_1377c 1378547 - 1377978 - | Putative N-acetyl-muramidase TERM 1690 1378026 - 1378036 + g 70 -5.4 -4.45485 | GACCTGAATCAGTCG CCTA GCA TAGG TTTTATCAGTATAAT Spy49_1378c 1379287 - 1378544 - | D-alanyl-D-alanine carboxypeptidase Spy49_1379c 1379984 - 1379277 - | Phosphoglycerate mutase family TERM 1691 1380345 - 1380370 + r 100 -13.3 -5.54894 | opp_overlap 1380345 TTATGTTGCAAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT TERM 1692 1380370 - 1380345 - R 100 -13.3 -5.02074 | opp_overlap 1380345 TTATGTTGCAAAAAA GGCTGCTTGGA AACT TCCATGCAGCC TTTTTTTAATACCTT Spy49_1380c 1380615 - 1380376 - | hypothetical protein Spy49_1381c 1381049 - 1380834 - | hypothetical protein TERM 1693 1380999 - 1380975 - G 81 -5.6 -5.05601 | CATGACATACAAAAA GGCAGCCTGT GAAAG ACCGACCGCC TTTTTTTCAGAGACA gatB 1382485 - 1381046 - | Aspartyl-tRNA(Asn) amidotransferase subunit B Glutamyl-tRNA(Gln) amidotransferase subunit B gatA 1383951 - 1382485 - | Aspartyl-tRNA(Asn) amidotransferase subunit A gatC 1384253 - 1383951 - | Aspartyl-tRNA(Asn) amidotransferase subunit C TERM 1694 1384468 - 1384433 - R 100 -20 -5.24989 | CCATACAGCAAAAAA CTTCCTGACTAAGGTC AGAA AACCTTAGTCAGGAAG TGGGACAAACTAAAC Spy49_1385c 1384733 - 1384485 - | Pyruvate,phosphate dikinase Spy49_1386c 1385802 - 1385248 - | Nicotinamidase TERM 1695 1385911 - 1385939 + r 83 -6.1 -5.19879 | opp_overlap 1385916, overlap 1385913 1385916 CTACCATTAACAGCA AAAAACATCTCTT TTC AAGAGATGTTGTC TTTTTCTATTTAAAA TERM 1696 1385913 - 1385937 + r 85 -8.7 -4.22132 | opp_overlap 1385916, overlap 1385911 1385916 ACCATTAACAGCAAA AAACATCTCTT TTC AAGAGATGTTG TCTTTTTCTATTTAA TERM 1697 1385934 - 1385916 - R 100 -10.4 -5.28683 | opp_overlap 1385913 1385911 1385916 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT TERM 1698 1385916 - 1385934 + r 100 -10.4 -4.17582 | opp_overlap 1385916, overlap 1385913 1385911 ATTAACAGCAAAAAA CATCTCTT TTC AAGAGATG TTGTCTTTTTCTATT codY 1386731 - 1385949 - | GTP-sensing transcriptional pleiotropic repressor codY TERM 1699 1386154 - 1386164 + g 73 -6.8 -4.15066 | opp_overlap 1386153 1386163, overlap 1386163 AACTCTCCAAGAATT GCTG CAA CAGC TTTCATTTCTGAATA Spy49_1388c 1388130 - 1386949 - | Aspartate aminotransferase TERM 1700 1387182 - 1387172 - G 71 -6.8 -3.99693 | opp_overlap 1387172, overlap 1387170 GGAAATAAATAAAGA CCTG CTT CAGG TTTAACTGCCGATAA TERM 1701 1388365 - 1388351 - H 84 -3.6 -5.68023 | opp_overlap 1388351 GTATAATGAAAAAAA GAATAA AAG CTATTC TTGTCAAACTGTTAA Spy49_1389 1388395 - 1388847 + | hypothetical protein Spy49_1390c 1390358 - 1388970 - | hypothetical protein TERM 1702 1389800 - 1389820 + g 70 -3.3 -4.84642 | TTCTTGTAATTTTTA TATGAGGGA ACT TCTCTTGTA TTTTCTTAGTTTCAG asnB 1390430 - 1391395 + | Putative L-asparaginase TERM 1703 1391407 - 1391448 + T 100 -16.2 -2.9587 | opp_overlap 1391414, overlap 1391414 ATAATCTAGCTTCCT GTAGAAATGTCCCACTAA AACATA TTAGTGGGACATTTCTAG TACTTTAAGCTTTAA TERM 1704 1391414 - 1391441 + T 100 -12.9 -4.04209 | opp_overlap 1391414, overlap 1391407 AGCTTCCTGTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA TERM 1705 1391441 - 1391414 - T 95 -12.9 -3.85817 | opp_overlap 1391414 1391407 AGCTTCCTGTAGAAA TGTCCCACTAA AACATA TTAGTGGGACA TTTCTAGTACTTTAA Spy49_1392c 1392448 - 1391744 - | hypothetical protein Spy49_1393c 1393363 - 1392461 - | Putative ABC transporter recG 1395670 - 1393655 - | Putative ATP-dependent DNA helicase TERM 1706 1395843 - 1395807 - R 72 -8 -3.34716 | opp_overlap 1395810, overlap 1395806 1395808 TGAGGTCTCAAAAAT CCCGAGTGGCGTCAAT CTCGT ATTGACGCCACTCTTT TACCACAGCAAAAAG TERM 1707 1395842 - 1395808 - R 83 -11.5 -2.60508 | opp_overlap 1395810, overlap 1395807 1395806 GAGGTCTCAAAAATC CCGAGTGGCGTCAAT CTCGT ATTGACGCCACTCTT TTACCACAGCAAAAA TERM 1708 1395810 - 1395840 + r 100 -18.5 -4.07568 | opp_overlap 1395808 1395807 1395806 GGTCTCAAAAATCCC GAGTGGCGTCAAT CTCGT ATTGACGCCACTC TTTTACCACAGCAAA TERM 1709 1395900 - 1395890 - R 76 -6.8 -4.56597 | CTTTGTGTGTAAAAA TCGG AAA CCGA ATGTCAAATCAGCAG TERM 1710 1395964 - 1395986 + r 80 -9.3 -3.60072 | overlap 1395961 TTGTCTACGTTCTGA CTCTTGTAT CTATT ATACAAGAG TTCCTATTTATTTTC Spy49_1395c 1397499 - 1396045 - | ABC-type cobalt transport system, ATPase component CbiO TERM 1711 1396979 - 1396992 + gr 71 -6.7 -4.04587 | CCTTGCATAATGGCC GTTGC AATA GCAAC TCTTTGTTTTTGCCC TERM 1712 1397319 - 1397308 - GR 72 -4.4 -4.7339 | AAGAAATTTTAAAAA GGTA GATT TACC TGAACCAGAAGGTCC Spy49_1396c 1398116 - 1397436 - | ABC-type cobalt transport system, permease component CbiQ Spy49_1397c 1398706 - 1398113 - | Permease component BL0695 of the cbiOQ-type ABC transporter cycC 1400373 - 1398703 - | Putative ABC transporter cycD 1402129 - 1400366 - | Putative ABC transporter fhuC2 1402962 - 1402126 - | Ferrichrome transport ATP-binding protein fhuC fhuB2 1403981 - 1402959 - | Ferrichrome transport system permease protein fhuB TERM 1713 1403206 - 1403186 - G 87 -8.3 -4.49958 | overlap 1403203 AGCCTAGGAAAGAAA CCACTCCAA CGA TCGAAGTGG CTACCGAAGCCAATA fhuD2 1405728 - 1403983 - | Ferrichrome-binding periplasmic protein precursor TERM 1714 1405351 - 1405362 + g 72 -4.4 -4.70266 | TAGTGTTGTCCCATT GGTA TCAG TACC TTTTTGGGTGATATT Spy49_1405c 1409752 - 1405925 - | Putative Fe3+-siderophore transport protein TERM 1715 1409501 - 1409511 + g 85 -6.8 -5.14965 | ATCAAAGGTTCGCTC GCCT TCC AGGC TTTTTTCATAGACAT TERM 1716 1410139 - 1410113 - R 95 -6.7 -5.89921 | ATCACAATAAAAAAA GACAATAGC CTTAATCGT GCTATTGTC TCAAAATCATTTATT isp2 1411753 - 1410242 - | Immunogenic secreted protein TERM 1717 1411373 - 1411398 + g 72 -8.3 -3.53298 | overlap 1411373 1411391 TGGTGATGGTTTGGG CTGATCAGTCG GTTT TGGCTGGTCAG TTGGTTTCGAATGAT TERM 1718 1411580 - 1411592 + g 82 -4.1 -5.4593 | AGTTTTATCTGATGT TGTAG GTG CTGCA TTTTTATTATTTTCC alr 1412940 - 1411840 - | Alanine racemase acpS 1413293 - 1412937 - | Holo-(acyl-carrier protein) synthase TERM 1719 1413376 - 1413340 - R 90 -11.7 -3.79071 | opp_overlap 1413346 1413349, overlap 1413342 GTTAGAAGATTTAAA CAGTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTCTA TATACCTAACTTTGT TERM 1720 1413374 - 1413342 - R 90 -12.1 -3.47542 | opp_overlap 1413346 1413349, overlap 1413340 TAGAAGATTTAAACA GTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTC TATATACCTAACTTT TERM 1721 1413346 - 1413370 + r 100 -15.9 -4.1399 | opp_overlap 1413342 1413340, overlap 1413349 AGATTTAAACAGTGA GAAGCTGAGAA TTA TTCTCAGCTTC TTTCTATATACCTAA TERM 1722 1413349 - 1413367 + r 100 -11.8 -4.18674 | opp_overlap 1413342 1413340, overlap 1413346 TTTAAACAGTGAGAA GCTGAGAA TTA TTCTCAGC TTCTTTCTATATACC secA 1415928 - 1413409 - | Protein export cytoplasm protein SecA ATPase RNA helicase TERM 1723 1415842 - 1415853 + g 86 -4.4 -5.51165 | CGCCATTTGGTCTGC GTAG GATT CTAC TTTTTTTGCAATTTT pmi 1418342 - 1417389 - | Mannose-6-phosphate isomerase scrK 1419393 - 1418389 - | Fructokinase TERM 1724 1419496 - 1419458 - R 80 -6.9 -4.54477 | opp_overlap 1419460 1419467, overlap 1419461 TCAAAACCTATAAAA GACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTT AGGTTTTAAAGTGCT TERM 1725 1419460 - 1419494 + r 87 -11 -3.37537 | opp_overlap 1419458 1419461, overlap 1419467 AAAACCTATAAAAGA CTAAAAATCTGGGA CTATTCA TCTCAGATTTTTAG TTAGGTTTTAAAGTG endoS 1422093 - 1419562 - | Secreted Endo-beta-N-acetylglucosaminidase (EndoS) TERM 1726 1420155 - 1420175 + g 71 -6.9 -3.99405 | opp_overlap 1420170, overlap 1420173 TTTCATCAGTAGTAG CAGTTACCT TAG AAGTAACTG TTTCTCCTAGGTTAG TERM 1727 1420436 - 1420462 + g 87 -8.8 -4.64144 | overlap 1420438 TGAGGATAATAACCT TTCGGTTTTTGA TTT TCAAAAGCCGTA TTTTTCACCGTTATT TERM 1728 1420438 - 1420460 + g 90 -11.4 -3.92577 | overlap 1420436 AGGATAATAACCTTT CGGTTTTTGA TTT TCAAAAGCCG TATTTTTCACCGTTA TERM 1729 1422290 - 1422323 + r 100 -14.8 -4.015 | opp_overlap 1422298, overlap 1422298 CTGCCATTCATGGCA GGACAAAAGAGCTG CTTAGT TAGCTCTTTTGTCC TTATTTGATAAGTGC scrA 1424207 - 1422324 - | Putative sucrose-specific PTS permease, enzyme II TERM 1730 1424340 - 1424359 + H 78 -2.2 -5.58522 | ATCACTAATATTTTT TATGTCAA GCGT TTAACATA TTTTTATTTTATATG scrB 1424449 - 1425888 + | Sucrose-6-phosphate hydrolase scrR 1425893 - 1426858 + | Putative sucrose operon repressor TERM 1731 1426886 - 1426944 + T 100 -21.5 -3.15699 | opp_overlap 1426892 1426898, overlap 1426892 1426898 CAATCACTAATTACT CTAAAAGACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTCTTTTAA TATTCGTACATAAAT TERM 1732 1426938 - 1426892 - T 100 -18.3 -4.17023 | opp_overlap 1426886 1426892 1426898, overlap 1426898 CTAATTACTCTAAAA GACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1733 1426892 - 1426938 + T 100 -20.5 -4.44797 | opp_overlap 1426892 1426898, overlap 1426886 1426898 CTAATTACTCTAAAA GACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC TERM 1734 1426898 - 1426932 + T 100 -12.3 -4.49352 | opp_overlap 1426898 1426892, overlap 1426892 1426886 ACTCTAAAAGACAAA CAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTG TTTGTCTTTTAATAT TERM 1735 1426932 - 1426898 - T 100 -10.1 -4.45771 | opp_overlap 1426892 1426886 1426898, overlap 1426892 ACTCTAAAAGACAAA CAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTG TTTGTCTTTTAATAT TERM 1736 1426994 - 1426968 - T 85 -6.7 -5.24449 | gap 1, opp_overlap 1426968 CATAAATTGAAAAAA TCGGATACAATC CTAA GATTGC-TCCGA CTTATTATGATTTAT nusB 1427451 - 1426999 - | N utilization substance B-like protein TERM 1737 1427406 - 1427396 - G 76 -6.8 -4.44046 | TCTATGTTAAATAAA GCCT GAA AGGC ACGTTCACGCAAATC Spy49_1419c 1427833 - 1427444 - | hypothetical protein efp 1428436 - 1427879 - | Translation elongation factor P comEB 1428993 - 1428532 - | Putative late competence protein required for DNA binding pepP 1430101 - 1429028 - | Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific) TERM 1738 1430210 - 1430193 - R 82 -7.7 -4.55826 | TTTAAAAGATTAAAA GGAGCTC AAAC GAACTCC TAATCCTATTGTTGT uvrA 1433074 - 1430216 - | UvrABC system protein A Spy49_1424 1433247 - 1434191 + | Putative divalent cation transport protein, magnesium transporter, CorA family TERM 1739 1434580 - 1434562 - g 71 -3.8 -4.95896 | opp_overlap 1434564, overlap 1434564 AGAAACTGACAAAAA CACCAATC CTT GGTTGATG TGGCTAGATACCTCT Spy49_1425 1434323 - 1434979 + | hypothetical protein TERM 1740 1435080 - 1435111 + T 75 -9 -3.44334 | gap 1, opp_overlap 1435087, overlap 1435087 CTAGTCCTAGTCAAC TAAA-AAACAGTCCG AAA TGGACTGTTTGTTTA TTAGTCTTCGTTTAC TERM 1741 1435103 - 1435087 - T 90 -8 -5.28481 | opp_overlap 1435080 1435087 TAGTCAACTAAAAAA CAGTCC GAAAT GGACTG TTTGTTTATTAGTCT TERM 1742 1435087 - 1435103 + T 93 -8.7 -4.71791 | opp_overlap 1435087, overlap 1435080 TAGTCAACTAAAAAA CAGTCCG AAA TGGACTG TTTGTTTATTAGTCT rpsR 1435351 - 1435112 - | SSU ribosomal protein S18p ssb2 1436007 - 1435516 - | Single-strand binding protein 2 rpsF 1436319 - 1436029 - | SSU ribosomal protein S6p Spy49_1429c 1436785 - 1436492 - | hypothetical protein TERM 1743 1437754 - 1437764 + G 70 -3.2 -4.84363 | AATACTAAAGGGAGA CTTC TAG GAGG TTTTTGGTCATTTCC mutY 1436953 - 1438107 + | A/G-specific adenine glycosylase TERM 1744 1438114 - 1438132 + F 82 -5.3 -5.29846 | opp_overlap 1438114 AATGCTTAATCACAA GTGAACT ATGAC GGTTCAC TTTTTGTTTACAATT Spy49_1431 1438284 - 1438871 + | Transcriptional regulator, Cro/CI family TERM 1745 1438884 - 1438922 + T 100 -17 -3.09933 | opp_overlap 1438890 1438894, overlap 1438890 1438894 TGAAGTTAGTAGGTC ATAAAATAAAGCTCAGCG TGA CGCTGGGCTTTATTTTAG TTAACTCAATTCAGC TERM 1746 1438916 - 1438890 - T 100 -13.8 -4.40804 | opp_overlap 1438884 1438890 1438894, overlap 1438894 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1747 1438890 - 1438916 + T 100 -16 -4.43477 | opp_overlap 1438890 1438894, overlap 1438884 1438894 TAGTAGGTCATAAAA TAAAGCTCAGCG TGA CGCTGGGCTTTA TTTTAGTTAACTCAA TERM 1748 1438912 - 1438894 - T 100 -10.2 -4.77775 | opp_overlap 1438890 1438884 1438894, overlap 1438890 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC TERM 1749 1438894 - 1438912 + T 100 -12.4 -4.78077 | opp_overlap 1438894 1438890, overlap 1438890 1438884 AGGTCATAAAATAAA GCTCAGCG TGA CGCTGGGC TTTATTTTAGTTAAC trx2 1439237 - 1438923 - | Thioredoxin reductase Spy49_1433c 1439713 - 1439318 - | PAP2 family protein mutS2 1442161 - 1439822 - | Putative DNA mismatch repair protein TERM 1750 1442287 - 1442258 - R 78 -7.3 -4.41348 | gap 1, opp_overlap 1442258 TTTCTCGTAAATAAA GAACCTAAAGGTGA AAC TCA-CTCCAGGTTC TTATATTAGTCACAA Spy49_1435c 1442855 - 1442310 - | hypothetical protein Spy49_1436c 1443166 - 1442858 - | hypothetical protein TERM 1751 1443128 - 1443142 + g 77 -8.6 -3.89881 | CAATGTTAATGTTTT TTCACC AAA GGTGAA TTTGTAGCGATTAAT TERM 1752 1443708 - 1443698 - g 70 -2.6 -5.06451 | GATGATTCTAAAAAA TTAT CGG ATAA AACCATTCAACAGAT Spy49_1437 1443323 - 1444225 + | Ribonuclease HIII TERM 1753 1444268 - 1444254 - g 73 -8.6 -3.76781 | opp_overlap 1444253 AAACAGTTTATTAAA GAATGG GGC CCATTC ACTCTCTTTTTAATT spi 1444236 - 1444829 + | Putative signal peptidase I TERM 1754 1444851 - 1444836 - f 100 -10.4 -5.37345 | opp_overlap 1444836 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG TERM 1755 1444836 - 1444851 + F 100 -10.4 -4.35874 | opp_overlap 1444836 TTTAATTAGAAAAAA CCTGCC TTTG GGCAGG TTTTCAGTTATCTTG recD 1444887 - 1447340 + | Exodeoxyribonuclease V alpha chain TERM 1756 1447461 - 1447449 - g 74 -4.8 -4.7254 | ATTTCTTATGAAAAA GTGC GTCAG GCAC TCAAAACGTCTACTA Spy49_1440 1447431 - 1447913 + | hypothetical protein TERM 1757 1447974 - 1447919 - T 84 -8.39999 -4.63932 | opp_overlap 1447931, overlap 1447922 1447931 1447934 TATGCTGTAATAAAA TAATGGACCAAAGAAGCTGATTAGGG AAAT CCCTAATCAGCTTCTTTTTTCTCCAA AATGAGGCGGACGGA TERM 1758 1447971 - 1447922 - T 100 -12.3 -4.43307 | opp_overlap 1447931, overlap 1447919 1447931 1447934 GCTGTAATAAAATAA TGGACCAAAGAAGCTGATTAGGG AAAT CCCTAATCAGCTTCTTTTTTCTC CAAAATGAGGCGGAC TERM 1759 1447962 - 1447931 - T 100 -20.4 -3.82531 | opp_overlap 1447931, overlap 1447922 1447919 1447934 AAATAATGGACCAAA GAAGCTGATTAGGG AAAT CCCTAATCAGCTTC TTTTTTCTCCAAAAT TERM 1760 1447931 - 1447962 + T 100 -20.4 -5.24531 | opp_overlap 1447931 1447922 1447919 1447934 AAATAATGGACCAAA GAAGCTGATTAGGG AAAT CCCTAATCAGCTTC TTTTTTCTCCAAAAT TERM 1761 1447959 - 1447934 - T 100 -16.3 -4.02571 | opp_overlap 1447931, overlap 1447931 1447922 1447919 TAATGGACCAAAGAA GCTGATTAGGG AAAT CCCTAATCAGC TTCTTTTTTCTCCAA dinP 1449100 - 1448006 - | DNA polymerase IV TERM 1762 1449039 - 1449060 + g 75 -5.9 -4.74132 | opp_overlap 1449038 1449039 1449040 1449042, overlap 1449040 ACTGCAGCAAAAAAG GCATCCATA TCAA TATGGATGA TTTTTCGTGACGTGT TERM 1763 1449040 - 1449059 + g 75 -9.4 -3.43756 | opp_overlap 1449040 1449039 1449038 1449042, overlap 1449039 CTGCAGCAAAAAAGG CATCCATA TCAA TATGGATG ATTTTTCGTGACGTG TERM 1764 1449059 - 1449040 - G 71 -9.4 -2.80472 | opp_overlap 1449039 1449040, overlap 1449039 1449038 1449042 CTGCAGCAAAAAAGG CATCCATA TCAA TATGGATG ATTTTTCGTGACGTG TERM 1765 1449674 - 1449648 - g 71 -6.5 -4.14511 | AACTTCATGCCAAAA GGTGGTATCCG TATGG CGGAAACGACC CTTAAAGAAAACGGC pfl 1449309 - 1451636 + | Putative pyruvate formate-lyase TERM 1766 1451708 - 1451669 - T 100 -17.5 -5.3236 | opp_overlap 1451669 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC TTTTTTCACTTATAA TERM 1767 1451669 - 1451708 + T 100 -15.3 -5.1925 | opp_overlap 1451669 ATAACTTATAAAAAA GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC TTTTTTCACTTATAA Spy49_1443c 1452113 - 1451724 - | Putative esterase TERM 1768 1451796 - 1451780 - G 75 -5.9 -4.7339 | AAGAAACTTTAAAAA CAGTAAT AAG ATCACTG GTATGAGTCAATAAC cppA 1452850 - 1452098 - | Putative putative C3-degrading proteinase TERM 1769 1453181 - 1453202 + G 80 -2.2 -5.67711 | overlap 1453178 CTTAGACTGATACAA GCTTTGCT AGTTTC GGCAATGC TTTTTATTTTCTTTA TERM 1770 1453486 - 1453498 + G 85 -9.1 -4.18702 | AACTTTACTTGCTAT GGCTG CAG CAGCC TTTATTGGAGCTTAT Spy49_1445 1453112 - 1454044 + | hypothetical protein TERM 1771 1454050 - 1454077 + T 75 -4.9 -4.98616 | opp_overlap 1454050 AAATAGATAAGATAA CGTTTCTGG GAATCACTAA CCAGAGACG TTTTTAATATTTTCC TERM 1772 1454349 - 1454325 - T 76 -4.3 -5.10497 | opp_overlap 1454325 AACTCATCTAAAAAA GACAAGTTC CTTAAGC GATCTTGTC TTGAGTCTAAAAGAA glpF2 1455327 - 1454380 - | Putative glycerol uptake facilitator protein TERM 1773 1455396 - 1455356 - R 73 -4.1 -4.97957 | gap 1, opp_overlap 1455356 1455358 1455360 CACACAATAATAAAA GCGGTAAAGAAAAGGACC ATAAAA GG-CCTTATCTTTATCAC TTTATTTCATAGTAT norA 1456926 - 1455730 - | Putative antibiotic resistance protein NorA TERM 1774 1456107 - 1456080 - G 76 -2.1 -5.42259 | gap 1, opp_overlap 1456087, overlap 1456085 1456086 CCATTGCTAAAAAAA GATAACTTGGGT ACAAG ACCCAT-TTATC GCCTTTAGCATCCAT TERM 1775 1456904 - 1456914 + g 74 -4 -5.13741 | opp_overlap 1456901, overlap 1456901 ATGGCCACAAAATGT TTGT TAA ACAA TTTTTCTTCCATTGA Spy49_1450 1457032 - 1457751 + | Transcriptional regulator, CrP/Fnr family TERM 1776 1458518 - 1458482 - g 87 -5.1 -5.41143 | opp_overlap 1458491, overlap 1458491 1458494 TAGTCGTTAAAAAAA GGAGACAAATCACTGTC GAA GACAGGGATTTTATTCC TCTTGAGACACAGCC TERM 1777 1458509 - 1458491 - g 76 -7.4 -4.24562 | opp_overlap 1458491, overlap 1458482 1458494 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1778 1458491 - 1458509 + G 83 -7.4 -4.78753 | opp_overlap 1458491 1458482 1458494 AAAAAAGGAGACAAA TCACTGTC GAA GACAGGGA TTTTATTCCTCTTGA TERM 1779 1458776 - 1458764 - g 75 -5.5 -4.67353 | CCAGCCACTCAAAAA CCCAC CAA GTGAG AGCTGATTGGGCAAA pepXP 1457773 - 1460055 + | Xaa-Pro dipeptidyl-peptidase TERM 1780 1460093 - 1460060 - T 81 -7.6 -4.41302 | opp_overlap 1460065, overlap 1460065 CATCAAATTAACAAA GAAAAGTGCTTAGC AATATA ACTAAGCACTTTTT TGTTAATTGGTCTTA TERM 1781 1460065 - 1460088 + T 87 -6.8 -5.5604 | opp_overlap 1460060 1460065 AATTAACAAAGAAAA GTGCTTAG CAATATAA CTAAGCAC TTTTTTGTTAATTGG TERM 1782 1460088 - 1460065 - T 88 -7.5 -5.13527 | opp_overlap 1460065, overlap 1460060 AATTAACAAAGAAAA GTGCTTAGC AATATA ACTAAGCAC TTTTTTGTTAATTGG Spy49_1452c 1460356 - 1460135 - | hypothetical protein TERM 1783 1460196 - 1460170 - G 76 -2.2 -5.42259 | opp_overlap 1460173, overlap 1460172 1460173 CTATTCCTAAAAAAA TATCATCAACGG AAA CCGCTAATGCTT GTGCAATACCTTTTA Spy49_1453 1460526 - 1460900 + | Putative repressor-phage associated TERM 1784 1461167 - 1461152 - T 83 -7.6 -4.8143 | opp_overlap 1461152 TGAATAACTTAAAAA GCCTTT AAAT AAAGGC TTTTTTTGATTATCT TERM 1785 1461152 - 1461167 + T 93 -7.6 -5.69379 | opp_overlap 1461152 TGAATAACTTAAAAA GCCTTT AAAT AAAGGC TTTTTTTGATTATCT Spy49_1454c 1461424 - 1461245 - | Paratox TERM 1786 1461501 - 1461469 - H 82 -9.6 -3.61438 | opp_overlap 1461468 1461467 1461477, overlap 1461464 1461467 1461472 1461477 TTACAGGAAATAATA TAATTAAATTTAAA GGTCG TTTAAATTTAATTA ACATCTTTTTTGTTA TERM 1787 1461498 - 1461472 - H 73 -6.9 -3.92071 | opp_overlap 1461468 1461467 1461477, overlap 1461464 1461469 1461467 1461477 CAGGAAATAATATAA TTAAATTTAAA GGTCG TTTAAATTTAA TTAACATCTTTTTTG TERM 1788 1461769 - 1461788 + G 71 -5 -4.63218 | opp_overlap 1461769 CAGAAAAATTAGAAA TTTCCCTG ATAC CACGGAAA TTTTGTTAGGAACGA spd3 1461662 - 1462462 + | Streptodornase TERM 1789 1462503 - 1462543 + F 93 -10.8 -4.06491 | opp_overlap 1462503 TCTAGATTGTGAACA TTATCCCAAATGTTAGAT TATTT ATTTAATATTTGGGGTAA TTTGTATAAAGTTAA Spy49_1456 1462842 - 1463168 + | hypothetical protein TERM 1790 1463209 - 1463188 - T 100 -9.4 -5.5208 | opp_overlap 1463188 TTATAACACAAAAAA CCGCCCTC AATCAA GAGAGCGG TTGGCTTTTTATTTA Spy49_1457c 1464084 - 1463218 - | hypothetical protein-phage associated Spy49_1458c 1464596 - 1464072 - | Uncharacterized phage-associated protein TERM 1791 1464148 - 1464160 + g 73 -7.7 -3.91332 | GTATATTTAATTCCT TGGAC ACC GTCCA TTATTCTATCCTCAT TERM 1792 1464726 - 1464702 - R 80 -4.8 -5.23316 | opp_overlap 1464703 1464704, overlap 1464704 TAGGATACCAAAAAA CAGCCCCCGC AAAAA GCGAGGGCAT TTGTCTTATCTAATT TERM 1793 1464703 - 1464725 + r 72 -6.1 -4.31766 | opp_overlap 1464702 1464704, overlap 1464704 AGGATACCAAAAAAC AGCCCCCGC AAAAA GCGAGGGCA TTTGTCTTATCTAAT TERM 1794 1464724 - 1464704 - R 100 -11.8 -4.23988 | opp_overlap 1464704 1464703, overlap 1464702 GGATACCAAAAAACA GCCCCCGC AAAAA GCGAGGGC ATTTGTCTTATCTAA TERM 1795 1464704 - 1464724 + r 79 -9.6 -3.17975 | opp_overlap 1464702 1464704, overlap 1464703 GGATACCAAAAAACA GCCCCCGC AAAAA GCGAGGGC ATTTGTCTTATCTAA Spy49_1459c 1465944 - 1464736 - | Phage-associated cell wall hydrolase Spy49_1460c 1466287 - 1466060 - | Holin TERM 1796 1466246 - 1466258 + g 77 -6.3 -4.49311 | TCCCAAAATAGCCAT CAAAG TTA CTTTG TTTTGTAGTCGTAAT Spy49_1461c 1466559 - 1466284 - | hypothetical protein TERM 1797 1466320 - 1466338 + g 76 -4.7 -5.02715 | CATATCTTTTAAATC TTTAACA TCATC TGTTAAA TTTTTAATTTGCTCT TERM 1798 1466378 - 1466407 + g 82 -8.6 -4.16943 | gap 1 ATCAACGTTTTATTT TGCTCAGCGTGCT CTTCA AGC-CGCCGAGCA TTTTGGCGTGTAACA Spy49_1462c 1467186 - 1466569 - | hypothetical protein Spy49_1463c 1467350 - 1467189 - | hypothetical protein Spy49_1464c 1469274 - 1467364 - | Hypothetical p protein TERM 1799 1468768 - 1468780 + g 70 -3.4 -4.86033 | overlap 1468761 1468760 TATGCCCAGCTGATA GCTA GCTGA TAGC TTTTTATCAGCGTTT Spy49_1465c 1470294 - 1469290 - | Hyaluronidase-phage associated Spy49_1466c 1472342 - 1470291 - | hypothetical protein Spy49_1467c 1473118 - 1472339 - | Phage associated hypothetical protein TERM 1800 1472730 - 1472762 + g 72 -9.4 -3.06686 | gap 1, overlap 1472727 TCGTTAGAAACTTCT TCTGGGACATCTTTA GATT TAAAGATG-CCTAGA TAATTTCTGTCAGGT TERM 1801 1473171 - 1473138 - R 100 -9.1 -5.40072 | gap 1, opp_overlap 1473142, overlap 1473142 CTCCTTTCAAAAAAA CTAA-GAGAAACAACT ACC AGCTGCTTCTCTTTAG TCTGATTTTTTCAAT TERM 1802 1473166 - 1473142 - R 87 -10.1 -4.03885 | opp_overlap 1473142, overlap 1473138 TTTCAAAAAAACTAA GAGAAACAACT ACC AGCTGCTTCTC TTTAGTCTGATTTTT Spy49_1468c 1476786 - 1473151 - | Putative minor tail protein TERM 1803 1474186 - 1474171 - G 73 -6.8 -4.258 | gap 1, opp_overlap 1474181 1474185, overlap 1474180 1474181 TGATTGAGCAACAAA CGC-GGC AAA GCCAGCG CCAGCTTGTGCTAGA TERM 1804 1474181 - 1474206 + g 74 -8.9 -3.52995 | opp_overlap 1474171 1474181 1474180, overlap 1474185 ACAAACGCGGCAAAG CCAGCGCCAGC TTGT GCTAGAGCTGG TGTTATTGTCATTAG TERM 1805 1474206 - 1474181 - G 77 -11.1 -2.75562 | opp_overlap 1474181 1474185, overlap 1474171 1474180 ACAAACGCGGCAAAG CCAGCGCCAGC TTGT GCTAGAGCTGG TGTTATTGTCATTAG Spy49_1470c 1477130 - 1476801 - | hypothetical protein Spy49_1471c 1477531 - 1477172 - | hypothetical protein TERM 1806 1477577 - 1477557 - R 84 -6.2 -5.26119 | opp_overlap 1477542 CCTTTAAAAATAAAA GGTTAGAT ACTAA ATCCAACC TAACCGTTACATTTC Spy49_1472c 1478237 - 1477584 - | Major tail protein TERM 1807 1477850 - 1477863 + g 81 -5.9 -5.05712 | AAATTTTTGCAAGCT CCCCG CCTT TGGGG TTTTTGCTTGTTTCT Spy49_1474c 1478636 - 1478247 - | Structural protein TERM 1808 1478423 - 1478396 - G 74 -4.1 -5.0133 | opp_overlap 1478398, overlap 1478398 TAGCTTGCGAAAAAA TAGCAGATGCC ATGTCA GACACCTGCTT CCGTTTTTTCTGCAA TERM 1809 1478421 - 1478398 - G 71 -6.7 -4.13561 | opp_overlap 1478398, overlap 1478396 GCTTGCGAAAAAATA GCAGATGCC ATGTCA GACACCTGC TTCCGTTTTTTCTGC Spy49_1475c 1478989 - 1478633 - | Hypothetical p protein Spy49_1476c 1479287 - 1478979 - | hypothetical protein-phage 370.2 TERM 1810 1479048 - 1479017 - G 76 -2.4 -5.36441 | gap 2, overlap 1479022 CTTCCAGATAAAAAA CAATAGCGCCAAGC TTGTTT GCCTG-CGCT-TTG TATCTCTTACCCTCA Spy49_1477c 1479637 - 1479284 - | hypothetical protein TERM 1811 1479507 - 1479486 - G 86 -8 -4.83677 | opp_overlap 1479485, overlap 1479506 AAAACAAAACTAAAA GCGCTGTC TATTTT GACAACGC CATATTTAGCTTTAA Spy49_1478c 1479893 - 1479651 - | hypothetical protein TERM 1812 1479830 - 1479807 - G 77 -6 -4.56597 | overlap 1479808 GCCCTCTGTCAAAAA CTCTACTCGG TCGC CCGAGTAAAT ATCGCCGACTTCGTA TERM 1813 1479829 - 1479808 - G 75 -9.5 -3.33744 | overlap 1479807 CCCTCTGTCAAAAAC TCTACTCGG TCGC CCGAGTAAA TATCGCCGACTTCGT Spy49_1479c 1480985 - 1479903 - | Phage protein Spy49_1480c 1481368 - 1480988 - | Putative structural protein-phage associated Spy49_1481c 1481911 - 1481378 - | hypothetical protein TERM 1814 1482010 - 1481999 - R 95 -4.4 -6.19302 | ACATAATAAAAAAAA CGTA TTCC TACG ACTTAGTTTGATTCT Spy49_1482c 1482321 - 1482055 - | hypothetical protein-phage associated Spy49_1483c 1482638 - 1482324 - | hypothetical protein TERM 1815 1482692 - 1482669 - R 87 -6.6 -5.40072 | opp_overlap 1482669 1482671 TTGGGTCCAAAAAAA GACGGGCGAC CACA GTCTTCCGTC TATAATAATATGTTT Spy49_1484c 1482893 - 1482708 - | hypothetical protein TERM 1816 1482833 - 1482857 + g 100 -5.7 -5.84011 | opp_overlap 1482836, overlap 1482836 TTGCACTAAAGTCAG GAATTGGATGA GAT TCATCCCACTC TTTTTGTTTTTTATT Spy49_1485c 1484459 - 1482897 - | hypothetical protein Spy49_1486c 1485942 - 1484440 - | hypothetical protein Spy49_1487c 1487243 - 1485954 - | Large terminase TERM 1817 1487004 - 1486976 - G 74 -5.3 -4.82855 | CATTAAACTTAAAAA GGTGTGTAACC TTTAATT GATTACACGCC CATTTAAAATCGGTA Spy49_1488c 1487703 - 1487221 - | Small terminase TERM 1818 1487729 - 1487712 - R 89 -7.7 -5.21236 | opp_overlap 1487714 AATCCATAATAAAAA GCCACAC GATT GTGTGAC TTCAGCCCGACATCT TERM 1819 1487732 - 1487755 + r 93 -11 -4.07568 | ACGATTGTGTGACTT CAGCCCGACA TCTA TGTCGGTCTG TTTTACCACAAGCAG Spy49_1489c 1488975 - 1488535 - | hypothetical protein TERM 1820 1489026 - 1489044 + r 82 -4.5 -5.54907 | overlap 1489020 AAATTTAACCAAGGG GGCGTTC CGTGT GGACGTC TTTTTGTTTTGTGGA Spy49_1491c 1489936 - 1489415 - | Hypothetical phage associated protein SpyM3_1331 Spy49_1492c 1490226 - 1489933 - | hypothetical protein TERM 1821 1489981 - 1489967 - G 83 -6.4 -5.04987 | AATACTTTTAAAAAA CACTGC TCA GCAATG ACTTGATCACTGCCT Spy49_1493c 1490408 - 1490223 - | hypothetical protein-phage associated Spy49_1494c 1490991 - 1490506 - | DNA N-4 cytosine methyltransferase M.NgoMXV Spy49_1496c 1491680 - 1491276 - | Hypothetical phage associated protein SpyM3_1243 Spy49_1497c 1491954 - 1491664 - | hypothetical protein TERM 1822 1491867 - 1491877 + g 70 -3.2 -4.9725 | overlap 1491876 TTTCAAAAGAGTTGC CGTA ATC TGCG TTTTTATCTAAAAAT TERM 1823 1492014 - 1492028 + r 81 -7.8 -4.41047 | ATTTGGCAATATTCT GCGTTC TAA GAGCGC TTTTAATTGCCAAGT Spy49_1498c 1492549 - 1492193 - | hypothetical protein-phage associated Spy49_1499c 1492987 - 1492625 - | hypothetical protein TERM 1824 1492929 - 1492954 + g 71 -6.1 -4.19817 | TAAGCTCCACTCCAT CTGCTAAAGCG TGGG CGTTTTTGCGG TTTTGGCTCAATCGG Spy49_1500c 1493621 - 1493196 - | Single-strand binding protein 3 TERM 1825 1493366 - 1493420 + g 76 -4.5 -5.01732 | gap 2 AGACACGTTGTTCTT GGTGGTTT--TCGTAGTTACGTGTC TGAATAC GACCCGTAACTCCGATCAAAGCACC TTTTTTAGCCCAGTT TERM 1826 1493424 - 1493442 + g 73 -7.5 -4.08394 | GATCAAAGCACCTTT TTTAGCC CAGTT GGCTAAA TTTTCAGCAGACTGT Spy49_1501c 1494288 - 1493614 - | Recombination protein Spy49_1502c 1494435 - 1494289 - | hypothetical protein TERM 1827 1494567 - 1494582 + r 72 -6.2 -4.45259 | CTTCTGCTTGCTTTT GCTTTT TGTA AAAAGC TTCTTTTTCGGCTTT Spy49_1504c 1495047 - 1494793 - | hypothetical protein Spy49_1505c 1495381 - 1495034 - | hypothetical protein Spy49_1506c 1497093 - 1495522 - | DNA replication protein dnaC Spy49_1507c 1497652 - 1497209 - | hypothetical protein Spy49_1509c 1498350 - 1498078 - | hypothetical protein TERM 1828 1498403 - 1498383 - R 73 -4 -5.18726 | overlap 1498398 TGGGTACAATAAAAA CCCTTATC TAAAC AACAAGGG CGCAAAAAATACCCT TERM 1829 1498441 - 1498413 - R 100 -10.4 -5.03145 | opp_overlap 1498436 1498438, overlap 1498398 1498438 CAAGGGCGCAAAAAA TACCCTTGTCAG GTTGA CTGAAAAGGGTA CACATGATAATATAT TERM 1830 1498509 - 1498525 + r 76 -2.9 -5.52909 | overlap 1498511 1498522 TCCAAAGTTTGGCGA TGGCGGA TTA TACGCTA TTTTTTTAGCTCTTG Spy49_1510c 1498702 - 1498523 - | hypothetical protein Spy49_1511c 1498967 - 1498833 - | hypothetical protein-phage associated Spy49_1512c 1499608 - 1499249 - | hypothetical protein Spy49_1513c 1499939 - 1499682 - | hypothetical protein Spy49_1514c 1500483 - 1500142 - | hypothetical protein TERM 1831 1500268 - 1500286 + g 100 -11.8 -5.0916 | TTGTGAAATCCTAGA GTCTACTG TTT CAGTAGAC TTTTTATCTTGACCG TERM 1832 1500766 - 1500790 + r 100 -12.9 -4.86731 | opp_overlap 1500768 TTGTCTAATCTAGTA GAGTTCCGCTC ACT GGGTGGAACTC TTTTGTTTCCACAAG Spy49_1516c 1500904 - 1500755 - | hypothetical protein-phage associated Spy49_1517c 1501664 - 1500936 - | Putative P1-type antirepressor-phage associated TERM 1833 1501743 - 1501713 - R 75 -9.8 -2.70044 | opp_overlap 1501713, overlap 1501712 1501711 CATGGTATAAAAATT TCGCCTAATTCTTT GTA AAAGAAATTGGCGA TTTTGAACATTTCAC TERM 1834 1501713 - 1501743 + r 93 -9.8 -4.17089 | opp_overlap 1501713 1501712 1501711 CATGGTATAAAAATT TCGCCTAATTCTTT GTA AAAGAAATTGGCGA TTTTGAACATTTCAC Spy49_1518c 1501885 - 1501697 - | Putative cro protein Spy49_1520c 1502255 - 1502073 - | hypothetical protein TERM 1835 1502250 - 1502234 - G 74 -5.1 -4.80396 | overlap 1502236 GAAAATATTCAAAAA CACTCAG AAG CTGAGTT AACAAATACTGTCAC TERM 1836 1502248 - 1502236 - G 75 -7.7 -3.9951 | overlap 1502234 AAATATTCAAAAACA CTCAG AAG CTGAG TTAACAAATACTGTC Spy49_1521c 1503293 - 1502532 - | Antirepressor TERM 1837 1503123 - 1503139 + g 77 -10.1 -3.30218 | overlap 1503118 1503115 TCTCATTTGACCTGC CGTCGCG ATT TGCGACG TTAGCTTATCTTCTG Spy49_1522 1503460 - 1503732 + | hypothetical protein TERM 1838 1503742 - 1503765 + F 100 -10.4 -4.71828 | TGGTAAATCACTTTT GAACTTGTAG ATTT CTACAGGTTC TTTTGTTCCTCGAAT TERM 1839 1503960 - 1503974 + F 100 -10 -4.71426 | TTGCTCATTGATTTA CACGGT TAA ACCGTG TTTTGTTGGTAAAAA TERM 1840 1504091 - 1504103 + G 70 -2.7 -5.09225 | TGCTTAATTTCGAAA CTGAA ATT TTTAG TTTTTTAGCTGCCGT TERM 1841 1504273 - 1504294 + G 73 -6.6 -4.19577 | opp_overlap 1504273, overlap 1504274 AAAATTAACATAAAG TTTGACGG CGATTT CCGTCAAG TTGTTTTAAAACTTG Spy49_1525 1504006 - 1504473 + | hypothetical protein TERM 1842 1504482 - 1504516 + F 72 -5.8 -4.27483 | gap 1, overlap 1504483 GCCTTGATTTCCTTT TCGCCTAGCCGTAGA TTAACT TCTA-GGCTAGGTGC TTTCATTTTCTCCAT TERM 1843 1504483 - 1504515 + F 77 -9.3 -3.15405 | gap 1, overlap 1504482 CCTTGATTTCCTTTT CGCCTAGCCGTAGA TTAACT TCTA-GGCTAGGTG CTTTCATTTTCTCCA Spy49_1526 1504589 - 1505368 + | hypothetical protein TERM 1844 1505485 - 1505498 + T 93 -8.1 -5.56263 | TTCCATCCCTTTCCA CTCCC TCTC GGGAG TTTTTATTTTGTAAT Spy49_1528c 1505660 - 1505502 - | hypothetical protein TERM 1845 1505729 - 1505746 + H 83 -11.3 -2.86271 | opp_overlap 1505712, overlap 1505726 1505731 TACCCCGTTAGGGGA GAGGGCT TCTT AGCCCTC TAATTATCCTCACCA TERM 1846 1505785 - 1505834 + H 74 -3.2 -5.28942 | overlap 1505827 AGTAGTGAATCTTAA GCTTAAAC-CAAAGAATCTTGA TTTCGACT TCTAG-TTCTTTGTGTTTAGGC TTTTTGTTTAGCCTA TERM 1847 1505911 - 1505925 + H 79 -10 -3.28791 | opp_overlap 1505905 1505913 TTGATTATAGTTTAA CACGGT TTA ACCGTG TTGTCAACACAAAAT Spy49_1529 1506024 - 1506782 + | Repressor protein Spy49_1530 1506855 - 1507277 + | Lj965 prophage superinfection immunity protein TERM 1848 1507319 - 1507283 - f 93 -4.4 -6.04953 | gap 1 AGACAAATAAAAAAA GCCCCCCGCTCA-AC TTTGGTCG GTGCGAGCGTGAGGC GAATCTAGTATAGTA TERM 1849 1507353 - 1507339 - f 70 -4.2 -4.82667 | opp_overlap 1507339 1507337 CTAGTATAGTAAAAA CCTGCT TTA AGTAGG TCTCTTTACTGTACT Spy49_1531 1507398 - 1508534 + | Prophage NZ131.3 probable integrase Spy49_1532 1508573 - 1508893 + | hypothetical protein TERM 1850 1508935 - 1508899 - T 93 -8.2 -5.44721 | gap 1, opp_overlap 1508904, overlap 1508904 ACCATTCTAAAAAAA CAAAACTAGCCTTGAGA AGGA TCCCA-GGCTAGTTTTT TTATGAGTTAGTGCT TERM 1851 1508930 - 1508904 - T 93 -8.1 -5.55855 | gap 1, opp_overlap 1508904, overlap 1508899 TCTAAAAAAACAAAA CTAGCCTTGAGA AGGA TCCCA-GGCTAG TTTTTTTATGAGTTA TERM 1852 1508904 - 1508930 + T 88 -5.9 -5.66684 | gap 1, opp_overlap 1508899 1508904 TCTAAAAAAACAAAA CTAGCCTTGAGA AGGA TCCC-AGGCTAG TTTTTTTATGAGTTA Spy49_1533c 1509687 - 1508950 - | Transcriptional regulator, MerR family dnaQ 1510427 - 1509840 - | Putative DNA polymerase III epsilon subunit TERM 1853 1510458 - 1510444 - R 88 -7.8 -5.00616 | opp_overlap 1510444 TTTTCCTCCAAAAAA GACCCT GAT AGGGCC TTCGTCATTTTTTGT Spy49_1535c 1511057 - 1510476 - | hypothetical protein Spy49_1536c 1511698 - 1511183 - | Putative transposase-IS1548 Spy49_1537c 1512305 - 1511601 - | Putative transposase-IS1548 TERM 1854 1513483 - 1513455 - g 76 -4.6 -5.093 | TCCAAAACAAGAAAA GGAATTGCTTGA TAAAC TCAAACACCTCC AGATACCCATTACAG Spy49_1538 1512526 - 1513695 + | hypothetical protein TERM 1855 1513704 - 1513728 + T 100 -9.4 -4.70266 | opp_overlap 1513704 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT TERM 1856 1513728 - 1513704 - T 88 -7.2 -5.1287 | opp_overlap 1513704 TTCATAGCTAAAAAA GCCTATTATC ACTAA GATAGTAGGC TTTTTAACTCCTATT TERM 1857 1513736 - 1513750 + T 86 -2.8 -5.83211 | TAGTAGGCTTTTTAA CTCCTA TTA TATGAG TTTTTTGTTTTAGTC deoC 1514461 - 1513790 - | Deoxyribose-phosphate aldolase nupC 1515693 - 1514491 - | Nucleoside permease nupC udp 1516493 - 1515714 - | Uridine phosphorylase Spy49_1543 1516733 - 1517491 + | Transcriptional regulator, GntR family TERM 1858 1517645 - 1517624 - f 80 -10.3 -2.98729 | opp_overlap 1517628 TATAATGATTATATA TCCACTTAA CCAG TTAAGTGGA TTCAGAGCGCTGATA rpsN2 1517700 - 1517969 + | SSU ribosomal protein S14p (S29e) TERM 1859 1518055 - 1518086 + T 100 -17.5 -4.56597 | opp_overlap 1518060 ATTACTTATCATCAT GACAACCCGGTAT GCCAAG ATACCGGGTTGTC TTTTTCAAAGGGAGA TERM 1860 1518081 - 1518060 - T 85 -10.2 -3.45023 | opp_overlap 1518055 TTATCATCATGACAA CCCGGTAT GCCAAG ATACCGGG TTGTCTTTTTCAAAG gcp 1519169 - 1518141 - | Putative glycoprotein endopeptidase Spy49_1546c 1519614 - 1519159 - | Ribosomal-protein-S18p-alanine acetyltransferase Spy49_1547c 1520284 - 1519586 - | Inactive metal-dependent protease-like protein; putative molecular chaperone Spy49_1548 1520568 - 1520798 + | hypothetical protein TERM 1861 1520919 - 1520962 + G 79 -9.8 -3.63341 | gap 1, opp_overlap 1520929, overlap 1520929 CATTATCGTTGATGC CGGTATCAAATTCCCAGAAGA TGA TCTTTTGGGAA-TTGATTACG TTATTCCAGACTATT TERM 1862 1520953 - 1520929 - g 80 -10.1 -3.72893 | opp_overlap 1520919 1520929 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 1863 1520929 - 1520953 + G 87 -12.3 -3.43049 | opp_overlap 1520929, overlap 1520919 GATGCCGGTATCAAA TTCCCAGAAGA TGA TCTTTTGGGAA TTGATTACGTTATTC TERM 1864 1522375 - 1522362 - g 79 -6.7 -4.61482 | TGCTTTAAAAAATAA GGATG CTAG CATCC AATCAGTTAACGGTG Spy49_1549 1520800 - 1522482 + | hypothetical protein TERM 1865 1522606 - 1522552 - T 75 -8.8 -3.50393 | opp_overlap 1522560 1522567 1522599, overlap 1522553 1522555 1522567 TTCTAGTTCAGATAA TTATCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTCTAT AATGGAAAATCAATT TERM 1866 1522605 - 1522553 - T 86 -12.3 -2.70022 | opp_overlap 1522560 1522567 1522599, overlap 1522552 1522555 1522567 TCTAGTTCAGATAAT TATCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTCTA TAATGGAAAATCAAT TERM 1867 1522603 - 1522555 - T 79 -10.5 -2.89298 | opp_overlap 1522560 1522567 1522599, overlap 1522553 1522552 1522567 TAGTTCAGATAATTA TCAAACTAAAAACCAGTCCTCAT AGA ACATGGACTGGTTTTTAGTTTTC TATAATGGAAAATCA TERM 1868 1522560 - 1522598 + T 100 -12 -4.57353 | opp_overlap 1522555 1522553 1522552 1522567, overlap 1522567 CAGATAATTATCAAA CTAAAAACCAGTCC TCATAGAACAT GGACTGGTTTTTAG TTTTCTATAATGGAA TERM 1869 1522567 - 1522591 + T 76 -4.3 -5.15526 | opp_overlap 1522555 1522553 1522552 1522567, overlap 1522560 TTATCAAACTAAAAA CCAGTCC TCATAGAACAT GGACTGG TTTTTAGTTTTCTAT TERM 1870 1522591 - 1522567 - T 88 -7.1 -5.01811 | opp_overlap 1522567 1522560, overlap 1522555 1522553 1522552 TTATCAAACTAAAAA CCAGTCCTCAT AGA ACATGGACTGG TTTTTAGTTTTCTAT TERM 1871 1522700 - 1522678 - T 100 -10.6 -4.19258 | ATAGCTCATCCAAAA GACCCACTCA ACT TGAGCAGGTC CTGATAAGTCTAATA glnA 1524056 - 1522710 - | Glutamine synthetase TERM 1872 1523910 - 1523931 + g 80 -10.3 -3.63298 | opp_overlap 1523903 1523907, overlap 1523908 ATCAAACATAACCTT GTTAGACAA TACT TTGTCTAAC TGTTCTTTAGTTGCA glnR 1524465 - 1524094 - | Putative transcriptional regulator Spy49_1552c 1525083 - 1524532 - | hypothetical protein TERM 1873 1524710 - 1524696 - G 91 -10 -4.56133 | GTGTAATAATCAAAA GAGCAG CCA CTGCTC CAATAATACCTGATT TERM 1874 1525320 - 1525303 - R 89 -7.7 -5.30155 | opp_overlap 1525303 1525302 TGATCAACTAAAAAA GACATGC ATCA GCATGCC CTTTACTATATATTA pgk 1526541 - 1525345 - | Phosphoglycerate kinase lppC 1527580 - 1526726 - | Putative acid phosphatase Spy49_1555c 1528701 - 1527820 - | hypersensitive- induced response protein-like protein TERM 1875 1528727 - 1528747 + r 72 -8.4 -3.34232 | opp_overlap 1528730, overlap 1528721 CCTTGTCATGTCTTA GAACTGAA CCGTT TTCAGTTC TTGACTTATTGTTAT TERM 1876 1528821 - 1528836 + r 71 -3.2 -5.03145 | TAACCATTAGCTTTG TGATGG ATTA CCCTCA TTTTTTAGGGGCTTA TERM 1877 1528916 - 1528895 - R 88 -7.3 -5.09685 | opp_overlap 1528895 CAATATAGACAAAAA GAGTCAGAC CTTT GCCTAACTC CTCTTTTTTTATTGT Spy49_1556c 1530602 - 1528938 - | DAK2 domain protein asp 1530967 - 1530602 - | Putative alkaline-shock protein TERM 1878 1531122 - 1531088 - R 71 -8.9 -3.08696 | gap 1, opp_overlap 1531087 1531097 1531120, overlap 1531087 ATGGATAGAAATAAG CTAATAAAAA-AAGCC CTAA GGCTTATTTCTATTAG ATGCGTTCTACTTTA rpmB 1531307 - 1531119 - | LSU ribosomal protein L28p TERM 1879 1531652 - 1531665 + r 73 -8.1 -3.69902 | opp_overlap 1531652 1531653, overlap 1531653 ATTATATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTGTTTAAT TERM 1880 1531665 - 1531652 - R 90 -8.1 -5.13473 | opp_overlap 1531652 1531653, overlap 1531653 ATTATATCTAAAAAA GCCCT CAAG AGGGC TTTAGGGTGTTTAAT fba 1532570 - 1531689 - | Fructose-bisphosphate aldolase class II TERM 1881 1532768 - 1532746 - R 100 -9.2 -5.95166 | opp_overlap 1532746 TTTAACCAAAAAAAA GAGACGAATC AAT GATTCACCTC TTACATTATGCGGAG Spy49_1560c 1533842 - 1532916 - | hypothetical protein TERM 1882 1533812 - 1533800 - G 71 -6.3 -4.30809 | TAAGAGTTATCAAAA GGAAT AGA ATTCC TAAATACTTTGCTAT pyrG 1535614 - 1534010 - | CTP synthase TERM 1883 1535773 - 1535749 - R 76 -2.8 -5.54907 | overlap 1535751 TCTAGAAAACAAAAA TAGCCCCCTA TTAAC TAGAGAGCTT TTGCCTGACCTCATA rpoE 1536479 - 1535871 - | DNA-directed RNA polymerase delta subunit TERM 1884 1536636 - 1536610 - R 93 -8.1 -5.69262 | opp_overlap 1536610 TTAGAAAAAGAAAAA CCAGACTAGAA AGACG TTCTAATCCGG CTTGTACGTTTTGTT tig 1537946 - 1536663 - | Cell division trigger factor tig Spy49_1564 1538267 - 1539112 + | Conserved hypothetical protein, possible mechanosensitive ion channel TERM 1885 1539175 - 1539128 - T 100 -10.3 -5.11033 | gap 1, opp_overlap 1539128 1539129, overlap 1539129 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 1886 1539128 - 1539175 + T 87 -10.3 -3.71649 | gap 1, opp_overlap 1539128 1539129, overlap 1539129 TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA TERM 1887 1539129 - 1539174 + T 83 -11.6 -2.82668 | gap 1, opp_overlap 1539129 1539128, overlap 1539128 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG TERM 1888 1539174 - 1539129 - T 100 -13.8 -3.65535 | gap 1, opp_overlap 1539128 1539129, overlap 1539128 ATAATCTTAAAAAAT CCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGG GTTTAGGATTTACGG Spy49_1565c 1539737 - 1539177 - | hypothetical protein Spy49_1566c 1540221 - 1539751 - | hypothetical protein thiD 1540975 - 1540211 - | Phosphomethylpyrimidine kinase TERM 1889 1540690 - 1540678 - G 70 -9.1 -3.11922 | opp_overlap 1540680, overlap 1540675 1540676 CAGGATCTAAAACCA CTGGG ATT CCCAG ATGCCCCTTTATAAA truA 1541714 - 1540965 - | tRNA pseudouridine synthase A comX2 1542388 - 1542131 - | ComX2 alternate sigma factor TERM 1890 1542467 - 1542444 - R 100 -14 -5.73339 | opp_overlap 1542444 AGAACCACAAAAAAA CAACAGGACA TTAG TGTCCTGTTG TTTTTTTCATTATGC TERM 1891 1542444 - 1542467 + r 100 -14 -5.68023 | opp_overlap 1542444 AGAACCACAAAAAAA CAACAGGACA TTAG TGTCCTGTTG TTTTTTTCATTATGC TERM 1892 1542633 - 1542598 - R 74 -9.2 -3.04517 | opp_overlap 1542607, overlap 1542607 ACTCTTCTCTAAAAT GCAAAAAAAGATAGGA CGCT TCCTACCTCTTTCTAC TCCGCCAGTAGGACT TERM 1893 1542624 - 1542607 - R 89 -6.3 -5.61824 | opp_overlap 1542607, overlap 1542598 TAAAATGCAAAAAAA GATAGGA CGCT TCCTACC TCTTTCTACTCCGCC TERM 1894 1544836 - 1544869 + r 71 -8.9 -3.03412 | overlap 1544830 1544835 TCTTAGCACTCGCAG TCTGACTGCCGATGA TATC TCGTTGGCATTCGGA GTTTATCTGAGATTG TERM 1895 1545528 - 1545547 + r 91 -12.2 -3.66803 | opp_overlap 1545527 1545526 CGCAGTCCTACAACC CCGAAGTG TAAA CACTTCGG TTTGCCCTCTTGCCG TERM 1896 1547812 - 1547826 + r 93 -8.6 -4.65032 | AACTTACTCGTTCCT TCTGTC GCT GACAGA TTTATTTCTCGTTTC Spy49_1571c 1549316 - 1548174 - | Glycerate kinase TERM 1897 1548316 - 1548296 - G 70 -2.5 -5.08824 | overlap 1548272 GTTGTATTGAAAAAA CAGCCAAAA AGT CTTCTGCTG CTAGTCCTGTCTCAA TERM 1898 1550289 - 1550263 - g 76 -4.4 -5.0809 | opp_overlap 1550266, overlap 1550257 1550266 AACAAACCACAAAAA GATCTCTTTGCC TTT GCCAAAGAAGTC CTATCTATCCCTCGT TERM 1899 1551713 - 1551737 + G 74 -9.3 -3.61398 | GCCTCTACTCTAATG GGGGTGAAAAC GAC GTTTTGGCCCC TTCTTGGGAAGAAGA hsdR 1549597 - 1552575 + | Putative type I site-specific deoxyribonuclease TERM 1900 1553467 - 1553485 + G 74 -4.6 -4.84017 | TTAGCCATTATTCCT GAGAAAAA ATA TTCTTCTC TTTTTATAAAAAATT TERM 1901 1553534 - 1553518 - g 89 -5.9 -5.42975 | opp_overlap 1553518, overlap 1553520 TTATATAAACAAAAA TCCTCAA TTA TTGAGAA ATATTTACAAGGTGG hsdS 1552588 - 1553730 + | Putative specificity determinant HsdS hsdM 1553743 - 1555323 + | Putative type I site-specific deoxyribonuclease TERM 1902 1555331 - 1555369 + T 77 -9 -3.6715 | opp_overlap 1555336, overlap 1555336 1555338 GAAACTAAAAGACCA AAAAACACCACAGTAG ATGATTA CTACTGTGGCGTTTTA TTTAAAATTGAGTAG TERM 1903 1555364 - 1555336 - T 100 -11.1 -5.36314 | opp_overlap 1555331 1555336 1555338 TAAAAGACCAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 1904 1555336 - 1555364 + T 95 -8.9 -4.90525 | opp_overlap 1555336, overlap 1555331 1555338 TAAAAGACCAAAAAA CACCACAGTAG ATGATTA CTACTGTGGCG TTTTATTTAAAATTG TERM 1905 1555338 - 1555362 + T 75 -10.1 -2.70854 | opp_overlap 1555336, overlap 1555336 1555331 AAAGACCAAAAAACA CCACAGTAG ATGATTA CTACTGTGG CGTTTTATTTAAAAT Spy49_1575c 1555733 - 1555533 - | hypothetical protein TERM 1906 1555616 - 1555641 + g 70 -8.5 -3.34233 | TAAAGTAGTTCCAAT CGTTGATATAT AAGC ATATATTAACG TTCTGGGAGTTGTGA TERM 1907 1555859 - 1555837 - R 87 -11.4 -3.17714 | opp_overlap 1555837 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA TERM 1908 1555837 - 1555859 + r 85 -9.2 -4.04174 | opp_overlap 1555837 GGAAATCCCTAGCAA CGACACAAGT AAA ACTTATGTCG TTTGATTATCTGCAA salR 1556481 - 1555876 - | Putative response regulator of salavaricin regulon salK 1557883 - 1556462 - | SalK salY 1559971 - 1558064 - | Putative ABC transporter TERM 1909 1559802 - 1559788 - G 78 -2.8 -5.51402 | ATACAGTCAAAAAAA CTAATG ACC CGTTAG CAATAACTAGAGCTT salX 1560710 - 1559973 - | Putative salivaricin A ABC transporter TERM 1910 1560368 - 1560352 - G 70 -8.1 -3.767 | opp_overlap 1560362 TAGTTATTTATCAAA TCATCAA TTT TTGATGA ATCAACATTTTTTAA salT 1561168 - 1560707 - | Putative salivaricin A modification enzyme salB 1562867 - 1561242 - | Putative salivaricin A modification enzyme, amino acid dehydration TERM 1911 1562918 - 1562892 - R 100 -12.4 -4.68994 | opp_overlap 1562892 1562891 ACCACTACTTAAAAA TCCTGCCTAGAC TGA GTCTAAACAGGA AATTTTTAGTCTGCT salA 1563097 - 1562951 - | Lantibiotic salivaricin A precursor lacG 1565042 - 1563609 - | 6-phospho-beta-galactosidase TERM 1912 1565083 - 1565046 - R 100 -11.7 -4.59511 | gap 1, opp_overlap 1565050, overlap 1565050 AATATCTTTCAAAAA TAAAGTTCCCAAA-ACAA TTT TTGTGTTTGAGAACTTTA CGACATTTAAACTGT TERM 1913 1565079 - 1565050 - R 90 -8.1 -4.85782 | gap 1, opp_overlap 1565050, overlap 1565046 TCTTTCAAAAATAAA GTTCCCAAA-ACAA TTT TTGTGTTTGAGAAC TTTACGACATTTAAA lacE 1566800 - 1565103 - | PTS system, lactose-specific IIBC component (EIIBC-Lac) (Lactose- permease IIBC component) (Phosphotransferase enzyme II, BC component) lacF 1567117 - 1566800 - | PTS system, lactose-specific IIA component (EIIA-Lac) (Lactose- permease IIA component) (Phosphotransferase enzyme II, A component) lacD2 1568124 - 1567141 - | Tagatose 1,6-diphosphate aldolase lacC2 1569057 - 1568128 - | Tagatose-6-phosphate kinase (Phosphotagatokinase) lacB2 1569618 - 1569103 - | Galactose-6-phosphate isomerase subunit LacB TERM 1914 1569173 - 1569197 + g 86 -7.1 -5.10497 | GGGTTGTTTTGATCT TGGCTAGCATG TTG CAAGCTATCCA TTTTTTCAATCCATT lacA2 1570081 - 1569653 - | Galactose-6-phosphate isomerase subunit LacA 2 TERM 1915 1570217 - 1570264 + H 95 -6.8 -5.85011 | gap 1, opp_overlap 1570217 1570221 1570224 1570248, overlap 1570221 1570224 1570226 1570239 CACCAAACATAAAAG TCAACATTTTTTTGTTTATTTTT ATA AAAAATAAAC-AAAATATGTTTA TTTTTTTCATTTTTA TERM 1916 1570221 - 1570260 + H 89 -7.6 -5.25976 | gap 1, opp_overlap 1570217 1570221 1570224 1570248, overlap 1570217 1570224 1570226 1570239 AAACATAAAAGTCAA CATTTTTTTGTTTATTTTT ATA AAAAATAAAC-AAAATATG TTTATTTTTTTCATT TERM 1917 1570258 - 1570224 - H 77 -10.4 -2.55657 | opp_overlap 1570221 1570217 1570224 1570226 1570239, overlap 1570221 1570217 1570248 CATAAAAGTCAACAT TTTTTTGTTTATTTTT ATA AAAAATAAACAAAATA TGTTTATTTTTTTCA TERM 1918 1570224 - 1570258 + H 100 -10.4 -4.21073 | opp_overlap 1570224 1570221 1570217 1570248, overlap 1570221 1570217 1570226 1570239 CATAAAAGTCAACAT TTTTTTGTTTATTTTT ATA AAAAATAAACAAAATA TGTTTATTTTTTTCA TERM 1919 1570226 - 1570256 + H 95 -13 -3.65523 | opp_overlap 1570224 1570221 1570217 1570248, overlap 1570224 1570221 1570217 1570239 TAAAAGTCAACATTT TTTTGTTTATTTTT ATA AAAAATAAACAAAA TATGTTTATTTTTTT TERM 1920 1570264 - 1570248 - H 76 -3.8 -5.252 | opp_overlap 1570226 1570224 1570221 1570217 1570239, overlap 1570224 1570221 1570217 TATTTTTATAAAAAA TAAACA AAATA TGTTTA TTTTTTTCATTTTTA lacR2 1570527 - 1571300 + | Lactose phosphotransferase system repressor Spy49_1592 1572028 - 1572249 + | DNA-damage-inducible protein J TERM 1921 1572395 - 1572380 - g 81 -5.4 -5.04597 | opp_overlap 1572391, overlap 1572374 AGCGACATAGAAAAA CTCGAA GTTT TCCGAG AAGTTGGTTTTGATG Spy49_1593 1572239 - 1572574 + | hypothetical protein TERM 1922 1572606 - 1572585 - f 89 -8.7 -4.45723 | opp_overlap 1572585, overlap 1572580 AATAACACATTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA TERM 1923 1572585 - 1572606 + F 100 -10.9 -5.18357 | opp_overlap 1572585 1572580 AATAACACATTAAAA GCCTTAGCA GTCT TGCTAGGGC TTTTTTGGTAGATTA TERM 1924 1573395 - 1573375 - g 93 -8.3 -5.2853 | opp_overlap 1573375 CAGCCAAAAAGAAAA GGCACAACT AGC AGTTGCACC TCTTTCAATTGAGTC Spy49_1594 1573340 - 1573660 + | degenerate integrase TERM 1925 1573801 - 1573775 - T 100 -12.4 -5.77632 | opp_overlap 1573775 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG TERM 1926 1573775 - 1573801 + T 72 -8 -3.47941 | opp_overlap 1573775 AAAACGACAAAAAAA GCACCTTGCAAG AGA CTTGCAAAATGC TTGTAATCGTTGATG rpsI 1574220 - 1573828 - | 30S ribosomal protein S9 TERM 1927 1574104 - 1574121 + g 82 -4.2 -5.45652 | TAGGTCAGCATGTGG GATGTA TTCTTC TACATC TTTTTTGTTAACAGT rplM 1574687 - 1574241 - | 50S ribosomal protein L13 TERM 1928 1574885 - 1574899 + r 75 -10 -2.73875 | opp_overlap 1574884 1574883, overlap 1574882 CGATTTAAGAGAATG GCAGAG CTG CTCTGC TGGTGTTAACGAGAA Spy49_1597c 1575111 - 1574905 - | Putative transcription regulator Spy49_1598c 1575806 - 1575108 - | hypothetical protein TERM 1929 1575931 - 1575908 - R 90 -8.2 -5.2189 | opp_overlap 1575908 1575919 TTAAGCAGCAAAAAA GGATTGAGGA TTTC TCTTCAATCC TTATAAGGGATTAAC TERM 1930 1575908 - 1575931 + r 83 -10.4 -3.31322 | opp_overlap 1575908, overlap 1575919 TTAAGCAGCAAAAAA GGATTGAGGA TTTC TCTTCAATCC TTATAAGGGATTAAC Spy49_1599c 1576817 - 1575942 - | hypothetical protein TERM 1931 1576885 - 1576871 - R 83 -4.9 -5.52986 | ATTTTATCAAAAAAA CCCGC ACTTG GCGAG TCGTAATTCTCATTA Spy49_1600c 1577380 - 1576898 - | hypothetical protein TERM 1932 1577360 - 1577379 + g 79 -10.8 -3.24365 | opp_overlap 1577348, overlap 1577359 AAACAACTGACGGGT TGATTGCC AAAA GGCAATCA TATTATCCCATCTAC Spy49_1601c 1578165 - 1577419 - | 23S rRNA methyltransferase Spy49_1602c 1579009 - 1578212 - | hypothetical protein TERM 1933 1579207 - 1579184 - R 89 -9 -4.29738 | gap 1, opp_overlap 1579187 TCAGACCTATGAAAA TAAGAGTCTCC TAG GG-GACTCTTA TGAGGATATCAATTG Spy49_1603c 1579618 - 1579205 - | hypothetical protein cysS 1580954 - 1579611 - | Cysteinyl-tRNA synthetase Spy49_1605c 1581212 - 1580982 - | hypothetical protein TERM 1934 1581254 - 1581236 - R 100 -11.8 -4.90266 | TTTATTAACGAAAAA CCTTCACA ACC TGTGAAGG CTTCAGAAAGTAGAC cysE 1582272 - 1581691 - | Serine acetyltransferase cysE Spy49_1607c 1583033 - 1582281 - | hypothetical protein TERM 1935 1582972 - 1582936 - G 78 -7.3 -4.39166 | overlap 1582939 GCCCAGACAGGAAAA TTATGGAAAGCGTTGAC AAG GGCAACACTATCCAAAA AATTATCAGGCGCAT TERM 1936 1582969 - 1582939 - G 70 -9 -3.17273 | overlap 1582936 CAGACAGGAAAATTA TGGAAAGCGTTGAC AAG GGCAACACTATCCA AAAAATTATCAGGCG pnp 1585158 - 1583026 - | Polyribonucleotide nucleotidyltransferase TERM 1937 1583329 - 1583343 + g 70 -9.2 -3.22388 | opp_overlap 1583307 AATAATTTCTTTAGT GCGGTC AAT GGCCGC TTGGTCACTTGAGTA TERM 1938 1583772 - 1583750 - G 82 -12 -3.01497 | opp_overlap 1583746, overlap 1583745 CCATCGGAAATGAGA CCCATGGCAA TCC CTGCCACGGG CGCCTTGATTGGTAC TERM 1939 1585422 - 1585405 - R 91 -4.1 -5.77856 | opp_overlap 1585405 AACAAAGCAAAAAAA GCAGG TTGGTATG CCTGC TTTCGTTTCCTAATA Spy49_1609c 1586166 - 1585438 - | Transaldolase sgaT 1587558 - 1586179 - | Transport protein SgaT, putative TERM 1940 1586455 - 1586439 - G 70 -8.7 -3.33483 | TAGCGAAAGCACCAA TCATCGC ACC GCGACGA CCCCCTGTTGAATTT Spy49_1611c 1587869 - 1587585 - | PTS system, IIB component Spy49_1612c 1589922 - 1587862 - | Putative transcriptional regulator TERM 1941 1589990 - 1590002 + r 70 -4.1 -4.67011 | CAAATTGAGGCCAAT TGTCT CTC GGACA TTTTTAACTGCAATT TERM 1942 1590081 - 1590094 + r 84 -6.7 -5.15167 | AAAATAGGCAAATCT GGGAA TTGA TTCCC TTTTTCTTCATGATA TERM 1943 1590147 - 1590110 - R 100 -15.9 -2.78384 | opp_overlap 1590113, overlap 1590113 1590118 TTTTTCTTCATGATA CAACAAAAGATACCTCA TCAC TGAGATACCTTTTGTTG CTAAATAAAATCATC TERM 1944 1590144 - 1590113 - R 91 -11.8 -3.54475 | opp_overlap 1590113, overlap 1590110 1590118 TTCTTCATGATACAA CAAAAGATACCTCA TCAC TGAGATACCTTTTG TTGCTAAATAAAATC TERM 1945 1590139 - 1590118 - R 81 -5.9 -4.85918 | opp_overlap 1590113, overlap 1590113 1590110 CATGATACAACAAAA GATACCTCA TCAC TGAGATACC TTTTGTTGCTAAATA TERM 1946 1590259 - 1590238 - R 88 -7.9 -5.18355 | opp_overlap 1590238 1590240 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA TERM 1947 1590238 - 1590259 + r 74 -5.7 -4.66833 | opp_overlap 1590238, overlap 1590240 GTCAAAAATGAAAAA GCCCACTGC ATAA GCAGAGGAC TTTTTAAACTTGAAA rpsO 1590544 - 1590275 - | SSU ribosomal protein S15p (S13e) TERM 1948 1590381 - 1590398 + g 70 -5.5 -4.38219 | ATTTTTTTCATCAAT CCACGGT AAGT AGCGTGG TCTTTTTTGTGTTCT Spy49_1614c 1590920 - 1590720 - | hypothetical protein TERM 1949 1590792 - 1590805 + g 72 -4.5 -4.66163 | opp_overlap 1590785 1590792 ACTAGCAAGGCCAAA TAGCC AATA GGCTG TTTTTAAATCAGAAT TERM 1950 1591913 - 1591894 - g 74 -5 -4.67904 | GATCAATGCTAAAAA CCCCTTTG AAAC CAAAGAAG AGCTCTTGATTTTAG def 1591319 - 1591933 + | Peptide deformylase TERM 1951 1591961 - 1591934 - T 89 -12.2 -3.27022 | opp_overlap 1591934, overlap 1591942 TTGATTTTAGACTAA CAAAAAAAGGCC CTTT AGCCTTTTTTTG TTAGTCTAAATAGCC TERM 1952 1591934 - 1591961 + T 87 -11.5 -3.2794 | opp_overlap 1591934 1591942 TTGATTTTAGACTAA CAAAAAAAGGC CCTTTA GCCTTTTTTTG TTAGTCTAAATAGCC TERM 1953 1591953 - 1591942 - T 90 -3.6 -5.85737 | opp_overlap 1591934, overlap 1591934 AGACTAACAAAAAAA GGCC CTTT AGCC TTTTTTTGTTAGTCT Spy49_1616c 1592509 - 1591967 - | hypothetical protein Spy49_1617c 1593068 - 1592640 - | Transcriptional regulator, MarR family TERM 1954 1592908 - 1592887 - G 89 -10.3 -4.1673 | overlap 1592890 GAAGTCGCTAACAAA GAATCAATC AAGT GATTGATTC GCATACAGCCTTTAG TERM 1955 1592905 - 1592890 - G 71 -6.2 -4.20367 | overlap 1592887 GTCGCTAACAAAGAA TCAATC AAGT GATTGA TTCGCATACAGCCTT polC 1597575 - 1593178 - | DNA polymerase III alpha subunit TERM 1956 1593747 - 1593769 + g 74 -6.3 -4.4009 | opp_overlap 1593750 TTTTTCCACACGATT CAATGTACC AGTCG GGCACATTG TTTTCTCGCATGGCA TERM 1957 1594490 - 1594514 + g 73 -2.1 -5.31275 | overlap 1594492 CCATAGTCGCGTTCA TAGCCTTTG ACAAATC CATAGGCTG TTTTTTCTGCTACGG TERM 1958 1596093 - 1596073 - G 71 -6.9 -4.08945 | ACTATCTTTGCAAAA GTCCTGAAA AGC TTTTAGGAC AGTAACTAATGGCTT TERM 1959 1597817 - 1597793 - R 72 -5 -4.80882 | gap 1 AGTTCACAGCAAAAA GAGGCCACTCT AAAC AG-GCAGCCTC TTCATTTCTTTTTTA proS 1599686 - 1597830 - | Prolyl-tRNA synthetase TERM 1960 1599801 - 1599834 + r 100 -12.6 -4.77986 | opp_overlap 1599801 TTTCATTTTGAGTAA GACCTCAACCCT TGCAAATCTT AGGGTTGAGGTC TTTTTCGATCTTTAA TERM 1961 1599834 - 1599801 - R 91 -12.6 -3.15544 | opp_overlap 1599801 TTTCATTTTGAGTAA GACCTCAACCCT TGCAAATCTT AGGGTTGAGGTC TTTTTCGATCTTTAA eep 1601143 - 1599884 - | hypothetical protein TERM 1962 1601096 - 1601079 - G 70 -5.6 -4.48449 | TTAGCAAAATAGAAA TGTCCA AATTCA TGGACA ATCACTAAAATACCA cdsA 1602010 - 1601216 - | Phosphatidate cytidylyltransferase TERM 1963 1601879 - 1601859 - G 77 -7.7 -4.16146 | opp_overlap 1601859 1601858 AAAACACCTTCAAAA GAAAAGACT TCT AATCTTTTC ATTTTCAGTAATTCT uppS 1602772 - 1602023 - | Undecaprenyl pyrophosphate synthetase TERM 1964 1602718 - 1602739 + g 100 -4.4 -5.9003 | opp_overlap 1602717, overlap 1602720 1602734 TGATAATTCCAATAT GCTTTGGG ATACTC CCCAAAAC TTTTTTTGTTGATTT TERM 1965 1602821 - 1602836 + r 79 -4.6 -5.31456 | TATTTTATCATATTT CACGCC TTTT GGCTTG TTTTTTATCAATTAG TERM 1966 1602980 - 1602959 - R 89 -3.1 -5.83211 | gap 1, opp_overlap 1602959, overlap 1602952 GATCAAAACAAAAAA GTTTGGCATA TTT CAT-CCAAAC TTTCCCCGCCTTAAT TERM 1967 1603007 - 1603025 + r 71 -8.8 -2.99545 | overlap 1603004 TAATGGCTTTCAATG GCACTGTC AGT GTCAGTGC TATCTACTGTCTCAA Spy49_1624c 1603356 - 1602991 - | Preprotein translocase subunit YajC TERM 1968 1603267 - 1603278 + g 72 -3.6 -5.08831 | GTTTAACTGATTTTG GCGT TCTT GCGC TTGTTTTTTTTGTTG Spy49_1625c 1603819 - 1603472 - | Putative bacterocin transport accessory protein, Bta TERM 1969 1603567 - 1603555 - G 72 -9.1 -3.35813 | GCTGATCGTAACTAA CCAGC AAA GCTGG AACTGTCACTAATTG pulA 1607365 - 1603961 - | Putative pullulanase TERM 1970 1605910 - 1605921 + g 70 -5.8 -4.371 | overlap 1605909 TTGGATCAATAAAGG CAGC TTTT GCTG TTTTGATGTCATCAG TERM 1971 1607632 - 1607592 - R 71 -5.5 -4.63928 | gap 1, opp_overlap 1607597 1607599, overlap 1607593 1607597 ATAGGATCTCAAAAA TCAAACAGCCAAAACGAG TTTCCG CTCGCTT-GGCTGTTGGG TAAACTCAAATCACA TERM 1972 1607631 - 1607593 - R 75 -9 -3.37634 | gap 1, opp_overlap 1607597 1607599, overlap 1607592 1607597 TAGGATCTCAAAAAT CAAACAGCCAAAACGAG TTTCCG CTCGCTT-GGCTGTTGG GTAAACTCAAATCAC TERM 1973 1607627 - 1607597 - R 83 -8.4 -4.32649 | gap 1, opp_overlap 1607597 1607599, overlap 1607593 1607592 ATCTCAAAAATCAAA CAGCCAAAACGAG TTTCCG CTCGCTT-GGCTG TTGGGTAAACTCAAA dexB 1609269 - 1607656 - | Glucan 1,6-alpha-glucosidase TERM 1974 1609383 - 1609351 - R 84 -11.5 -3.00525 | opp_overlap 1609360, overlap 1609354 1609360 TTTGCGCAAATCACA TGATAAAAAGGCTGG AAC CCAACCTTTTTATGA ATATCGCTTATACCT TERM 1975 1609380 - 1609354 - R 87 -13.2 -2.7314 | opp_overlap 1609360, overlap 1609351 1609360 GCGCAAATCACATGA TAAAAAGGCTGG AAC CCAACCTTTTTA TGAATATCGCTTATA TERM 1976 1609374 - 1609360 - R 88 -7.8 -4.95758 | opp_overlap 1609360, overlap 1609354 1609351 ATCACATGATAAAAA GGCTGG AAC CCAACC TTTTTATGAATATCG TERM 1977 1609360 - 1609374 + r 77 -5.6 -4.89852 | opp_overlap 1609360 1609354 1609351 ATCACATGATAAAAA GGCTGG AAC CCAACC TTTTTATGAATATCG msmK 1610531 - 1609398 - | Sugar ABC transporter, ATP-binding protein TERM 1978 1610828 - 1610811 - R 100 -9.9 -5.1675 | opp_overlap 1610810 CCAGGCAGCAAAAAA GAAAGCC CTGT GGCTTTC CTAATATTTCAACAA lrp 1611722 - 1610829 - | Leucine-rich protein ska 1612017 - 1613339 + | Streptokinase TERM 1979 1613409 - 1613380 - T 95 -8.7 -5.66684 | gap 1, opp_overlap 1613380 TAACTGACAAAAAAA GCAAGCAACACGCT ATC AACA-GTTGCTTGC TTTTTTCTAATCTCT TERM 1980 1613380 - 1613409 + T 80 -5.1 -5.35459 | opp_overlap 1613380 TAACTGACAAAAAAA GCAAGCAAC ACGCTATCAACA GTTGCTTGC TTTTTTCTAATCTCT dtd 1613880 - 1613437 - | D-tyrosyl-tRNA(Tyr) deacylase TERM 1981 1613594 - 1613569 - G 77 -9.7 -3.56562 | AAAGCTATCATACAA CTGCCTAGCCA AATC TGGCTTAGCAG CACCAGTAAAGGCAG relA 1616114 - 1613895 - | GTP pyrophosphokinase / Guanosine- 3,5-bis(Diphosphate) 3-pyrophosphohydrolase TERM 1982 1615727 - 1615746 + g 73 -7.2 -4.09739 | gap 1, opp_overlap 1615726 TATCTTTGGACATAG CCATCAGCA TTT TGC-GATGG TTTTCGGCGAGTTGC TERM 1983 1616326 - 1616301 - R 100 -12.7 -4.72272 | opp_overlap 1616301 1616296 GCTCCCGACCAAAAA TAGAGAGAACC AAGG GGCTCTCTCTA TTATGTTTGCTTATC TERM 1984 1616301 - 1616326 + r 93 -10.5 -3.91905 | opp_overlap 1616301, overlap 1616296 GCTCCCGACCAAAAA TAGAGAGAACC AAGG GGCTCTCTCTA TTATGTTTGCTTATC sclA 1617626 - 1616358 - | Collagen-like surface protein TERM 1985 1618260 - 1618290 + G 91 -11.8 -3.81146 | overlap 1618261 GGAGAGTTTATTGCT GCCCATGGCAACGC CCA GCGTTGTCTTGGGA TTATTGGTTCAGGCA TERM 1986 1618261 - 1618289 + G 95 -15.3 -2.88366 | overlap 1618260 GAGAGTTTATTGCTG CCCATGGCAACGC CCA GCGTTGTCTTGGG ATTATTGGTTCAGGC TERM 1987 1618350 - 1618364 + G 73 -8.6 -3.62275 | opp_overlap 1618349 1618346 1618344 ACAGCCAAACAGTAT GCCAAA CGC TTTGGC TTTCCACTGCTAGGT nrdI2 1618008 - 1618490 + | Ribonucleotide reduction protein NrdI TERM 1988 1618756 - 1618801 + T 100 -24.4 -3.29273 | opp_overlap 1618760, overlap 1618760 GGGTACTGACATGAC TAAAGAGGTCTAACCAGCTC TACCTT GAGCTGGTTAGACCTCTTTG TGTTCTCCTAATCCC TERM 1989 1618760 - 1618797 + T 100 -23 -4.29304 | opp_overlap 1618760, overlap 1618756 ACTGACATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTGGTTAGACCTC TTTGTGTTCTCCTAA TERM 1990 1618797 - 1618760 - T 100 -23 -3.82218 | opp_overlap 1618760 1618756 ACTGACATGACTAAA GAGGTCTAACCAGCTC TACCTT GAGCTGGTTAGACCTC TTTGTGTTCTCCTAA Spy49_1635c 1619701 - 1618883 - | hypothetical protein Spy49_1636c 1621970 - 1619784 - | PTS system, glucose-specific IIBC component TERM 1991 1622279 - 1622254 - R 90 -3.9 -5.87996 | opp_overlap 1622254 1622271 1622272 GAAGCAATAAAAAAA GGCCGTTGACA CAAT CGTGAACTGCC TGTTCGTTTCTTTAG TERM 1992 1622307 - 1622328 + r 72 -5.9 -4.2828 | opp_overlap 1622310, overlap 1622310 TAGCCTCTTCTTTCT AAAGTAAGC AACA GCTTACTTA TTTTGATGCCTGCAA TERM 1993 1622310 - 1622325 + r 78 -7.6 -4.26327 | opp_overlap 1622310, overlap 1622307 CCTCTTCTTTCTAAA GTAAGC AACA GCTTAC TTATTTTGATGCCTG TERM 1994 1622325 - 1622310 - R 71 -7.6 -3.53012 | opp_overlap 1622310 1622307 CCTCTTCTTTCTAAA GTAAGC AACA GCTTAC TTATTTTGATGCCTG Spy49_1637c 1623075 - 1622326 - | hypothetical protein TERM 1995 1623025 - 1623037 + g 100 -6.3 -5.75599 | overlap 1623021 GATGGTATCTTTATC GGTAA CCG TTACC TTTTTTTCTGCTTTG Spy49_1638c 1624028 - 1623075 - | Ribosomal protein L11 methyltransferase TERM 1996 1623179 - 1623165 - G 70 -2.8 -5.06816 | overlap 1623167 AGTTTCTAAGAAAAA GCCT GCGCTAA AGGC AGCTTCCAGAACCAT nudC 1625127 - 1624045 - | hypothetical protein nudB 1625660 - 1625304 - | MutT/nudix family protein nudA 1626005 - 1625688 - | hypothetical protein Spy49_1642c 1626489 - 1626019 - | hypothetical protein Spy49_1643c 1626673 - 1626554 - | hypothetical protein Spy49_1644c 1627532 - 1626954 - | Transposase Spy49_1646c 1627983 - 1627693 - | Putative transposase TERM 1997 1628041 - 1628085 + r 100 -15.4 -4.62054 | opp_overlap 1628038 1628047, overlap 1628042 1628047 TTGGACAAATAATTA TTGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAATCCTTTTAG TTTTGCTTTGATTCG TERM 1998 1628042 - 1628084 + r 100 -16.7 -3.36148 | opp_overlap 1628038 1628047, overlap 1628041 1628047 TGGACAAATAATTAT TGAAAGGATTTAGTTCTGT ATTGG ACAGGACTAAATCCTTTTA GTTTTGCTTTGATTC TERM 1999 1628079 - 1628047 - R 91 -12.2 -3.74658 | opp_overlap 1628042 1628041 1628047, overlap 1628038 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAATCC TTTTAGTTTTGCTTT TERM 2000 1628047 - 1628079 + r 100 -14.4 -4.74084 | opp_overlap 1628047 1628038, overlap 1628042 1628041 AAATAATTATTGAAA GGATTTAGTTCTGT ATTGG ACAGGACTAAATCC TTTTAGTTTTGCTTT Spy49_1647c 1628844 - 1628038 - | Putative transposase, IS861 TERM 2001 1629289 - 1629314 + r 73 -7.7 -3.75665 | overlap 1629290 TTGAGATCGGATTCT GCCATATCAAA CTTT TTTGATATGGA TTTAATGGACTCTCC TERM 2002 1629290 - 1629313 + r 83 -11.2 -2.85078 | overlap 1629289 TGAGATCGGATTCTG CCATATCAAA CTTT TTTGATATGG ATTTAATGGACTCTC TERM 2003 1629388 - 1629432 + r 73 -8.6 -3.30969 | opp_overlap 1629388 1629390, overlap 1629401 AATTTCATAAAAAAA TAGCACCCCAATCGTTAGAT TTTGT GTCTAACTTTTGGGGTGCAG TTCAGTTTACTAGAT TERM 2004 1629431 - 1629388 - R 93 -7.6 -5.63504 | gap 1, opp_overlap 1629388 1629401, overlap 1629390 AATTTCATAAAAAAA TAGCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC-A GTTCAGTTTACTAGA TERM 2005 1629430 - 1629390 - R 100 -12.7 -4.45201 | opp_overlap 1629388 1629401, overlap 1629388 TTTCATAAAAAAATA GCACCCCAATCGTTAGA TTTTGTG TCTAACTTTTGGGGTGC AGTTCAGTTTACTAG Spy49_1649c 1629813 - 1629499 - | hypothetical protein Spy49_1651 1630202 - 1630438 + | hypothetical protein Spy49_1652 1630510 - 1630704 + | hypothetical protein TERM 2006 1630754 - 1630726 - f 100 -14.8 -3.37522 | opp_overlap 1630726 1630750 ATTGTAGTCAATCAA GACTGAACTTTC TTAGT GAAAGTTCAGTC TTTTTACGTGGCCAA TERM 2007 1630726 - 1630754 + F 100 -14.8 -4.65895 | opp_overlap 1630726, overlap 1630750 ATTGTAGTCAATCAA GACTGAACTTTC TTAGT GAAAGTTCAGTC TTTTTACGTGGCCAA TERM 2008 1631047 - 1631068 + G 73 -7.3 -4.13767 | opp_overlap 1631046 1631049 CCCATAATGACAGAC TAGGCAACG AGTA CCTTGCCTA TTTTACAGTGCACAA papB 1630830 - 1632587 + | Para-aminobenzoate synthase, aminase component / Aminodeoxychorismate lyase TERM 2009 1632843 - 1632833 - g 79 -5.4 -4.93877 | TTTTACCAAACAAAA CCTA TCT TAGG AGTGTGTCTGGGACA trpG 1632620 - 1633186 + | Anthranilate synthase, amidotransferase-like component / Para-aminobenzoate synthase, amidotransferase component Spy49_1655 1633219 - 1634487 + | ATPase, AAA family TERM 2010 1634878 - 1634865 - f 82 -5.3 -5.24989 | opp_overlap 1634865 CTATACATGAAAAAA CCTTT GTTT AAAGG CTTTTTTTGCTTGTC pai1 1634985 - 1635425 + | Pai1 protein Spy49_1657 1635460 - 1635966 + | DNA topology modulation protein FlaR, putative TERM 2011 1636056 - 1636019 - T 100 -18.8 -3.1355 | opp_overlap 1636019 1636025 1636052, overlap 1636025 GCTATTCAGACTGAA GACAAAGTCCTTAGAA ACTAAA TTCTAAGGACTTTGTC TTCAGTCTGAAACAA TERM 2012 1636019 - 1636056 + T 100 -18.8 -3.12351 | opp_overlap 1636019 1636025, overlap 1636025 1636052 GCTATTCAGACTGAA GACAAAGTCCTTAGAA ACTAAA TTCTAAGGACTTTGTC TTCAGTCTGAAACAA TERM 2013 1636025 - 1636050 + T 100 -10.6 -4.22678 | opp_overlap 1636019 1636025, overlap 1636019 CAGACTGAAGACAAA GTCCTTAGAA ACTAAA TTCTAAGGAC TTTGTCTTCAGTCTG TERM 2014 1636050 - 1636025 - T 100 -10.6 -4.22678 | opp_overlap 1636025 1636019, overlap 1636019 CAGACTGAAGACAAA GTCCTTAGAA ACTAAA TTCTAAGGAC TTTGTCTTCAGTCTG Spy49_1658c 1636425 - 1636090 - | hypothetical protein Spy49_1659c 1637079 - 1636435 - | hypothetical protein TERM 2015 1638800 - 1638777 - g 75 -2.5 -5.24129 | gap 1 CTTGCTGATAAAAAA GTCAAAGGAA CACGC CTCCTT-GAC ATTCCATCAAATGAT dppA 1638159 - 1639649 + | Dipeptide-binding ABC transporter, periplasmic substrate-binding component TERM 2016 1640557 - 1640569 + G 82 -7.7 -4.52047 | overlap 1640553 TTTGGAGGATCTGTT CTTGC TGA GCAAG TTTTCTCATATCCTG dppB 1639762 - 1640739 + | Dipeptide transport system permease protein dppB TERM 2017 1640870 - 1640914 + G 79 -10.9 -3.12895 | opp_overlap 1640882, overlap 1640882 TTTACGCAACCTCGC TCCTTCCTTAAACCATCTTTT TGG GACAGATGGTTTAGGTAGGGA TATGTTCGTCAGAAC dppC 1640736 - 1641557 + | Dipeptide transport system permease protein dppC dppD 1641569 - 1642372 + | Dipeptide transport ATP-binding protein dppD dppF 1642356 - 1642982 + | Dipeptide transport ATP-binding protein dppF TERM 2018 1643068 - 1643026 - T 87 -11.6 -3.25538 | opp_overlap 1643028 1643040, overlap 1643028 1643040 TTTCTAACAAAATCA CACCATTAAAAAAACCAGCT GTA AGCTGGTTTTTTTAATTATT TTAATTTTTCCTTAA TERM 2019 1643066 - 1643028 - T 95 -14.2 -3.18634 | opp_overlap 1643028 1643040, overlap 1643026 1643040 TCTAACAAAATCACA CCATTAAAAAAACCAGCT GTA AGCTGGTTTTTTTAATTA TTTTAATTTTTCCTT TERM 2020 1643028 - 1643066 + T 100 -12 -4.81523 | opp_overlap 1643028 1643026 1643040, overlap 1643040 TCTAACAAAATCACA CCATTAAAAAAACCAGCT GTA AGCTGGTTTTTTTAATTA TTTTAATTTTTCCTT TERM 2021 1643054 - 1643040 - T 100 -10 -5.56568 | opp_overlap 1643028 1643040, overlap 1643028 1643026 ACACCATTAAAAAAA CCAGCT GTA AGCTGG TTTTTTTAATTATTT TERM 2022 1643040 - 1643054 + T 100 -10 -5.73672 | opp_overlap 1643040 1643028 1643026, overlap 1643028 ACACCATTAAAAAAA CCAGCT GTA AGCTGG TTTTTTTAATTATTT Spy49_1665c 1643264 - 1643064 - | hypothetical protein TERM 2023 1643233 - 1643243 + g 71 -4 -4.86293 | CCACCAGATGCTTGC TCAA TTT TTGA TTTTAATTTTTCTTC Spy49_1666c 1645904 - 1643433 - | hypothetical protein TERM 2024 1644413 - 1644437 + g 75 -2.9 -5.33026 | overlap 1644414 TTGTTACTTTGCGAC TCACTTTTTTA GTG TCAAAGAGTGG TTTTTCTTTGCCTTG TERM 2025 1645147 - 1645163 + g 74 -6.5 -4.44608 | opp_overlap 1645146 GGGCGGTAATCAGAC GGTCTAG CAC CTCGACC TTGTTTTTGACTCCA TERM 2026 1645431 - 1645441 + g 73 -5.4 -4.62669 | overlap 1645436 AGTTCCTTTGGCTAC TTGC TCA GCAA TTTGTTGTTTGGTTC lmb 1646837 - 1645917 - | Laminin-binding surface protein TERM 2027 1645980 - 1646004 + g 79 -11.5 -2.65274 | overlap 1645979 TAGATATGTCTTGTT TCCGCTTGGAG CAG CTTCAAGTGGA CTTAATGTCTTTACT TERM 2028 1646470 - 1646495 + g 82 -8.3 -4.14392 | TCCATATCTTCTAGC CCTTTGACTCT ATCT AGTGTCAGAGG TTTTGACGCTTCAAA TERM 2029 1646515 - 1646525 + g 85 -4 -5.53288 | opp_overlap 1646515 GACGCTTCAAACACA TCAA CCT TTGA TTTTTTTAAATTAGG TERM 2030 1647016 - 1647042 + r 100 -16.8 -3.0792 | opp_overlap 1647016, overlap 1647006 1647004 1647018 1647020 1647022 GCACATCTAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2031 1647042 - 1647016 - R 100 -16.8 -5.50499 | opp_overlap 1647016 1647006 1647004 1647018 1647020 1647022 GCACATCTAAAAAAA TAGAGAGAACCA AAT TGGTTCTCTCTA TTAAATAAGCTCTTA TERM 2032 1647018 - 1647040 + r 95 -15 -3.09505 | opp_overlap 1647016, overlap 1647016 1647006 1647004 1647020 1647022 ACATCTAAAAAAATA GAGAGAACCA AAT TGGTTCTCTC TATTAAATAAGCTCT TERM 2033 1647020 - 1647038 + r 85 -11.8 -3.10522 | opp_overlap 1647016, overlap 1647018 1647016 1647006 1647004 1647022 ATCTAAAAAAATAGA GAGAACCA AAT TGGTTCTC TCTATTAAATAAGCT TERM 2034 1647022 - 1647036 + r 71 -8.6 -3.11072 | opp_overlap 1647016, overlap 1647020 1647018 1647016 1647006 1647004 CTAAAAAAATAGAGA GAACCA AAT TGGTTC TCTCTATTAAATAAG Spy49_1668c 1648410 - 1647073 - | Cell surface/Fibronectin-binding protein TERM 2035 1647233 - 1647258 + g 93 -9.1 -5.24129 | overlap 1647254 GACAATGAGCGATTT GGAGAGTAAGA CTGT TCTTGCTCTTC TTTTTTATCAGAAGA scpA 1652050 - 1648661 - | C5a peptidase precursor TERM 2036 1651194 - 1651219 + g 79 -3.4 -5.40004 | opp_overlap 1651194 1651213, overlap 1651195 1651212 1651213 GTCACAATGCTAACA CCTTTTGATT TGGCAT AATCAAAAGC TTTTTTGGTTTCGTC TERM 2037 1652123 - 1652102 - R 100 -11.7 -4.73613 | opp_overlap 1652106 TGACCATTAAGAAAA GAGAGAATC AAAC GATTCTCTC CTAGCTGTCCATCTG ennX 1653491 - 1652385 - | EnnX protein TERM 2038 1652572 - 1652597 + g 81 -6.9 -4.66953 | overlap 1652593 TTATTAGCTGGTTTG GTAGCAGGT GTTTTTGA ACCTGCTGC TTTTTCAGCTCTTAG TERM 2039 1653675 - 1653654 - R 100 -11.7 -4.67353 | opp_overlap 1653649 1653654 TTAGCCACTCAAAAA GAGAGAATC ATTT GATTCTCTC TTAGCTTTAGAATCA TERM 2040 1653654 - 1653675 + r 87 -11.7 -3.28497 | opp_overlap 1653654, overlap 1653649 TTAGCCACTCAAAAA GAGAGAATC ATTT GATTCTCTC TTAGCTTTAGAATCA emm49 1654858 - 1653701 - | Antiphagocytic M protein TERM 2041 1653922 - 1653934 + g 80 -7.7 -4.43309 | CTTGTTTAGCCAATT GCTCT TTA AGAGC TTTTGCTTCAGCTTC TERM 2042 1654170 - 1654195 + g 82 -4 -5.5074 | opp_overlap 1654176 TTTTGGTGCTCAGCA GTAAGAGCAG CTAGAT CTGCTTCTAC TTTTTTCTTAGCTTC TERM 2043 1654296 - 1654321 + g 82 -4 -5.5074 | opp_overlap 1654302 TTTTGGTGCTCAGCA GTAAGAGCAG CTAGAT CTGCTTCTAC TTTTTTCTTAGCTTC TERM 2044 1654575 - 1654589 + g 89 -4.3 -5.65177 | ACTTGAGATTGATGT TCTAG CTTTT CTAGA TTTTTTTGTCGCTCT TERM 2045 1654809 - 1654777 - G 79 -8.3 -4.07687 | opp_overlap 1654777 AGCCTGCTCCTAAAA CAGCCACAGCGACCG CTA CGGATGCTGTACCTG TTTTTAATTTTCTAA TERM 2046 1654777 - 1654809 + g 90 -8.3 -5.1417 | opp_overlap 1654777 AGCCTGCTCCTAAAA CAGCCACAGCGACCG CTA CGGATGCTGTACCTG TTTTTAATTTTCTAA TERM 2047 1655036 - 1655020 - R 87 -6.6 -5.41746 | opp_overlap 1655020 AACCGTTCAAAAAAA GAGGAA TGGTC TTCCTC TTTTTTTGTTTTTTT TERM 2048 1655020 - 1655036 + r 100 -6.6 -6.32976 | opp_overlap 1655020 AACCGTTCAAAAAAA GAGGAA TGGTC TTCCTC TTTTTTTGTTTTTTT Spy49_1672c 1656330 - 1655083 - | Fc-gamma receptor TERM 2049 1655325 - 1655340 + g 78 -7.6 -4.36411 | CTGCTTTTAGCTTAG CAAGCT CTTC AGCTTG TTTTGCTAATTGCTC TERM 2050 1655352 - 1655364 + g 80 -7.7 -4.43309 | CTTGTTTTGCTAATT GCTCT TTA AGAGC TTTTGCTTCAGCTTC TERM 2051 1655918 - 1655928 + g 75 -5.4 -4.6902 | overlap 1655927 TTTTTGTTATTTAGT GCAT CTA ATGC TTTTTGAGCTTCTGC TERM 2052 1656058 - 1656037 - G 72 -8.9 -3.33009 | opp_overlap 1656037 1656041, overlap 1656041 CAAAACTTTGGATAA GAAAGATAA TTCT TTATCTTTC TGCTTAATAGTGTTT TERM 2053 1656152 - 1656171 + g 72 -3.5 -5.05113 | overlap 1656153 CTACGTAAAACTTCC TCGAGAG CTTCTT CTCTCGC TTTTGTTTCTCTAGG TERM 2054 1656261 - 1656281 + g 71 -3.9 -4.84529 | opp_overlap 1656257 1656261, overlap 1656263 AAACTGTCAAAGCTA CTGCTACTG ATG CAGTACCTG TTTTTAACTTTCTCA mga 1658121 - 1656520 - | M protein trans-acting positive regulator (Mga) TERM 2055 1658034 - 1658050 + g 83 -7.3 -4.69326 | GCTCCTTATCTTTAA CTCCGAT AGC ATTGGAG TTTTCTGTTAAATAT TERM 2056 1658496 - 1658513 + r 75 -8.5 -3.36135 | TTTTCGGTTTTTATC TGTGACA TTAT TGTCACA TTCATTAAAAATTCT TERM 2057 1658741 - 1658778 + r 71 -8.7 -2.97146 | opp_overlap 1658741, overlap 1658740 CAAAAGACAAAAAAA CTTCCAATAACTTAG CTTGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT TERM 2058 1658778 - 1658741 - R 100 -10.9 -5.9362 | opp_overlap 1658741 1658740 CAAAAGACAAAAAAA CTTCCAATAACTTAG CTTGTGCT CTAAATTATTGGAAG ATTATTTGACCTATT Spy49_1674c 1659048 - 1658797 - | Hypothetical mga-associated protein isp1 1660754 - 1659126 - | Immunogenic secreted protein TERM 2059 1659697 - 1659710 + g 84 -2.3 -5.72207 | ATCAAGGTATCCAAC TGGCC TAGT GACCA TTTTTTTGCTTTGAG Spy49_1676c 1662244 - 1660856 - | Two-component system histidine kinase Spy49_1677c 1662894 - 1662241 - | Two-component system response regulator TERM 2060 1662285 - 1662302 + g 89 -5.5 -5.40474 | TGCCTGTAATTGTCT TGAGGGG AATA CCCGTCA TTTTTTTACGAAGGT TERM 2061 1662938 - 1662959 + r 81 -5.9 -4.89729 | gap 1, opp_overlap 1662938, overlap 1662946 GTATCAAGCAGCTAA GGATGACATC AAA GG-GTCATCC TTTTTGACTTTTATG Spy49_1678c 1664205 - 1662988 - | Putative ABC transporter TERM 2062 1663244 - 1663254 + g 88 -8.2 -5.14965 | ATAAGCTTACGTCTA GCGC CAA GCGC TTTTTTGATCCCAAT TERM 2063 1663894 - 1663908 + g 73 -7.8 -3.80189 | opp_overlap 1663893 ACCATATGAGATCAG GGCGTT TTT GACGCC TTTGACTTGCTGTAT Spy49_1679c 1664892 - 1664218 - | ABC transporter ATP-binding protein TERM 2064 1664526 - 1664544 + g 72 -3.1 -5.01732 | gap 1, overlap 1664531 GCTTTAACATCTCTA GGGC-TCG TTTG CGACGCTC TTTTTTAGGAACATT Spy49_1680c 1666147 - 1664879 - | Putative ATP-binding cassette transporter protein TERM 2065 1665235 - 1665250 + g 70 -3.2 -4.85177 | GGTCATTGCCACCTT GGCC TTGACCTT GGCC TTTTTCCTCTGCTTT TERM 2066 1666442 - 1666405 - R 76 -2.8 -5.45802 | opp_overlap 1666405 1666400 TTTGGAAAACAAAAA TCATATAACCGTTC GCTCACATAA GCACGGGTATATGA TTTTGTACATTTGCG Spy49_1681c 1666975 - 1666571 - | hypothetical protein Spy49_1682c 1667298 - 1667002 - | hypothetical protein TERM 2067 1667382 - 1667423 + r 91 -11.8 -3.58726 | gap 2, opp_overlap 1667382 1667387, overlap 1667384 1667391 TCTATTTGATAAAAA C-C-TAACTAAGGCCAGTGC ATTT GCACTGGCCTTAGTGATGCG TTGTGTCTAACAGCG TERM 2068 1667421 - 1667382 - R 100 -18 -4.85599 | opp_overlap 1667382 1667384 1667391, overlap 1667387 TCTATTTGATAAAAA CCTAACTAAGGCCAGTGC ATTT GCACTGGCCTTAGTGATG CGTTGTGTCTAACAG TERM 2069 1667384 - 1667419 + r 100 -19.2 -2.64877 | opp_overlap 1667382 1667387, overlap 1667382 1667391 TATTTGATAAAAACC TAACTAAGGCCAGTGC ATTT GCACTGGCCTTAGTGA TGCGTTGTGTCTAAC TERM 2070 1667416 - 1667387 - R 100 -20.9 -3.49077 | opp_overlap 1667384 1667382 1667391, overlap 1667382 TTGATAAAAACCTAA CTAAGGCCAGTGC ATTT GCACTGGCCTTAG TGATGCGTTGTGTCT TERM 2071 1667391 - 1667412 + r 100 -15.9 -3.23538 | opp_overlap 1667387 1667382, overlap 1667384 1667382 TAAAAACCTAACTAA GGCCAGTGC ATTT GCACTGGCC TTAGTGATGCGTTGT sfbX49 1669395 - 1667440 - | Fibronectin-binding protein TERM 2072 1669565 - 1669578 + r 74 -5.3 -4.70169 | CTTAGGGTCGCTAGA CTAAC GAGG GTTAG TTTTCTTCGGTGTCG sof 1672655 - 1669575 - | Serum opacity factor TERM 2073 1671822 - 1671843 + g 73 -8.8 -3.72152 | ACGGTAAAAGGTCAT TAGGCGTA CAGAAT TACGCCTA TTGTGATTTTCCTTA TERM 2074 1672995 - 1673005 + H 70 -4 -4.98255 | AAAGTTTGTGACCTT GATT TTT AATC TTTTTCTCCTTAAAA Spy49_1686 1673078 - 1673314 + | hypothetical protein TERM 2075 1673404 - 1673367 - T 93 -14.4 -2.65264 | opp_overlap 1673367 CTATCACTGATACCA TTCACGCTAAGCCT AGCTAGAAAG AGGCTTAGCGTGAA TTTTTTTTGCTGACT TERM 2076 1673367 - 1673404 + T 100 -14.4 -5.86965 | opp_overlap 1673367 CTATCACTGATACCA TTCACGCTAAGCCT AGCTAGAAAG AGGCTTAGCGTGAA TTTTTTTTGCTGACT TERM 2077 1673469 - 1673430 - T 73 -7.3 -4.08216 | opp_overlap 1673431 1673432 1673437, overlap 1673432 1673433 1673437 TGACTGGTTTTAAAA CATTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAGCT TTATGACATTGCCCT TERM 2078 1673431 - 1673468 + T 93 -10.8 -3.92522 | opp_overlap 1673430 1673432 1673433 1673437, overlap 1673432 1673437 GACTGGTTTTAAAAC ATTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAGC TTTATGACATTGCCC TERM 2079 1673432 - 1673467 + T 93 -14.3 -2.95192 | opp_overlap 1673430 1673432 1673433 1673437, overlap 1673431 1673437 ACTGGTTTTAAAACA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2080 1673467 - 1673432 - T 91 -12.1 -3.63922 | opp_overlap 1673432 1673431 1673437, overlap 1673430 1673433 1673437 ACTGGTTTTAAAACA TTAAAGACTCTATCC TTATTT GGATAGAGTCTTTAG CTTTATGACATTGCC TERM 2081 1673466 - 1673433 - T 100 -15.6 -2.78032 | opp_overlap 1673432 1673431 1673437, overlap 1673432 1673430 1673437 CTGGTTTTAAAACAT TAAAGACTCTATCC TTATTT GGATAGAGTCTTTA GCTTTATGACATTGC TERM 2082 1673437 - 1673462 + T 91 -12 -3.89215 | opp_overlap 1673437 1673433 1673432 1673430, overlap 1673432 1673431 TTTTAAAACATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA TERM 2083 1673462 - 1673437 - T 95 -12 -4.07678 | opp_overlap 1673432 1673431 1673437, overlap 1673433 1673432 1673430 TTTTAAAACATTAAA GACTCTATCC TTATTT GGATAGAGTC TTTAGCTTTATGACA TERM 2084 1673537 - 1673552 + T 71 -5.4 -4.57341 | TTTGAAAAGGGGAGT GATGGC TAGG GCTATC TTTTTAAGCAACCTT ropA 1674540 - 1673590 - | Peptidylproline cis-trans-isomerase Spy49_1688c 1674889 - 1674572 - | hypothetical protein TERM 2085 1674803 - 1674757 - G 71 -5.3 -4.64144 | gap 1, opp_overlap 1674765, overlap 1674765 AATAACTCCCAAAAA TCGTAAAAGGACTGAGTCCCAT CTCT ACAGAACTCAGTCC-TTTACCT TGGCATCTTAGGGAA TERM 2086 1674796 - 1674765 - G 100 -12.4 -4.31329 | opp_overlap 1674765, overlap 1674757 CCAAAAATCGTAAAA GGACTGAGTCCCAT CTCT ACAGAACTCAGTCC TTTACCTTGGCATCT Spy49_1689c 1675302 - 1674997 - | Spi SpeB protease inhibitor speB 1676500 - 1675304 - | Strepotococcal cysteine protease (Streptopain) / Streptococcal pyrogenic exotoxin B (SpeB) TERM 2087 1678012 - 1678023 + G 70 -3 -5.09762 | CGATTCGGATGTTTG TCAA TATG TTGA TTTTGTTTATTCAGC ropB 1677441 - 1678283 + | RopB TERM 2088 1678297 - 1678319 + T 84 -6.3 -5.02715 | opp_overlap 1678297 GAGGCTCTTTAAAAA GCTAACGCT CTTAT GGTGTTAGC TTTTTGATTTGGTAT TERM 2089 1678418 - 1678437 + T 83 -6.5 -5.02201 | opp_overlap 1678410 1678418, overlap 1678412 GACAAATCATAAAAA GCAATGA CGGCAA TCATTGC TTTTTCTAGTATTTT TERM 2090 1678437 - 1678418 - T 88 -7.2 -5.06735 | opp_overlap 1678418 1678412, overlap 1678410 GACAAATCATAAAAA GCAATGAC GGCA ATCATTGC TTTTTCTAGTATTTT mf1 1679342 - 1678512 - | Streptodornase B / Mitogenic factor 1 Spy49_1693 1679426 - 1679554 + | hypothetical protein Spy49_1694 1679707 - 1680216 + | Putative low temperature requirement C protein TERM 2091 1680255 - 1680218 - T 88 -12.9 -3.01329 | opp_overlap 1680223, overlap 1680223 CCAACCAACAATAAG CAAAACCAGTCTAGGAA TATA TCCCTAGACCGGTTTTT TAGATTATCAAGAAA TERM 2092 1680250 - 1680223 - T 100 -12.8 -4.61824 | opp_overlap 1680223, overlap 1680218 CAACAATAAGCAAAA CCAGTCTAGGAA TATA TCCCTAGACCGG TTTTTTAGATTATCA TERM 2093 1680223 - 1680250 + T 90 -8.4 -5.1925 | opp_overlap 1680223 1680218 CAACAATAAGCAAAA CCAGTCTAGGAA TATA TCCCTAGACCGG TTTTTTAGATTATCA gldA 1681373 - 1680285 - | Glycerol dehydrogenase TERM 2094 1680614 - 1680600 - G 72 -8.6 -3.54424 | TGTCAGCGCTGTAAA GCCATT GTG AATGGC ATGTGCAGCAGCCAG mipB 1682098 - 1681430 - | Transaldolase pflD 1684528 - 1682111 - | Putative pyruvate formate lyase 3 TERM 2095 1682400 - 1682422 + g 70 -7.8 -3.68529 | opp_overlap 1682421, overlap 1682388 CCTCCGACAATCTCA TCTGTTGGTA ATT TAGCAACAGA TTTCAATACTGAAGT TERM 2096 1683019 - 1683040 + g 77 -6.5 -4.5774 | TGCGGGTAATTTCGC GCAGGGTGG CATC CCATGCTGC TTTTAATTCTTCATA TERM 2097 1683239 - 1683259 + g 72 -3.2 -5.14563 | opp_overlap 1683218, overlap 1683218 1683217 GGCTGAGTAGTCATA GGCGTCTT CTTCT GAGACACC TTTTTTGATGAAAGA TERM 2098 1683438 - 1683457 + g 76 -2.1 -5.40625 | gap 1, overlap 1683442 CTTAGGACAAGGTAA GACAGTGG GTTGA CCGC-GTC TTTTTTATCTCGTGT TERM 2099 1683525 - 1683544 + g 71 -6.4 -4.2704 | gap 1, opp_overlap 1683525 CCTGCTGATGAGAAG GTGTGG-GC TTG GCTCCGCAC TTTGTTAATGGTCAG TERM 2100 1683819 - 1683835 + g 72 -8.7 -3.48772 | GCTTGACGTTCTGGA CTAGCGG TTT CTGCTAG TTCTCTAGCCAACTT TERM 2101 1684712 - 1684693 - R 77 -5.7 -5.00616 | TCTTTTTCTAAAAAA CCACCTC TAACTG GAGATGG TCTCAAGAATTTGTA Spy49_1698c 1686043 - 1684739 - | PTS system, cellobiose-specific IIC component Spy49_1699c 1686361 - 1686053 - | PTS system, cellobiose-specific IIB component Spy49_1700c 1686709 - 1686389 - | Putative PTS system, enzyme III TERM 2102 1686962 - 1686940 - R 86 -5.5 -5.69793 | gap 1, opp_overlap 1686953 ACATCAAACAAAAAA GCCC-TGACC GTGT GGTCTTGGGC CTCTATAAATATCAT Spy49_1701c 1687976 - 1686996 - | Putative transcriptional regulator Spy49_1702c 1688741 - 1687992 - | Transcriptional regulator, DeoR family TERM 2103 1688252 - 1688219 - G 70 -8.4 -3.32997 | gap 1, overlap 1688221 TGCCCATAAAGCCAA GATCTTTGTTGAAAC CGTCT GTTCCAACAAAGA-C ACGATTGACATGAAA TERM 2104 1688251 - 1688221 - G 83 -12.1 -3.23047 | overlap 1688219 CCCATAAAGCCAAGA TCTTTGTTGAAAC CGTCT GTTCCAACAAAGA CACGATTGACATGAA Spy49_1703 1688864 - 1689637 + | Pyruvate formate-lyase activating enzyme TERM 2105 1689741 - 1689780 + T 95 -14.6 -3.28984 | overlap 1689736 TGCCTTTACCTTTAT GCTTTTTTAAAGCTCAAA CCAG TATGGGCTTTAAAAAAGC TTACTAATTAGATTA TERM 2106 1689830 - 1689811 - T 100 -13.6 -4.95155 | opp_overlap 1689807 TTGATACTACAAAAA GGCTGGGA ATAC TCCCAGCC TAGGCTTTTCCAAGC Spy49_1704c 1690049 - 1689873 - | Preprotein translocase subunit SecE rpmG1 1690215 - 1690063 - | LSU ribosomal protein L33p TERM 2107 1690092 - 1690110 + g 79 -6.8 -4.59982 | TGTGTAAGGTATATG TTTTGCAG TAT TTGCAAAA TTTATTTACTTCTAG pbp2A 1692600 - 1690264 - | Multimodular transpeptidase-transglycosylase TERM 2108 1691609 - 1691619 + g 70 -3.2 -4.9138 | AGCCCTACTGCTCTA GCTT GTT GAGC TTTTGTTTGGGTAAT TERM 2109 1692509 - 1692521 + g 76 -3.3 -5.18357 | overlap 1692510 TTTTGATTGTGTTGT GGCGT TAA ACGCG TTTTTTGATGCATTA Spy49_1707c 1693019 - 1692639 - | Putative translation initiation inhibitor Spy49_1708 1693510 - 1693701 + | hypothetical protein Spy49_1709 1693595 - 1694596 + | Putative ribosomal large subunit pseudouridine synthase TERM 2110 1694615 - 1694575 - T 100 -14.9 -3.57792 | opp_overlap 1694577 1694584, overlap 1694576 1694584 TGACGCAGTCTTAAA CGCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGTT TAGCTGTTTTCATAG TERM 2111 1694614 - 1694576 - T 100 -18.4 -2.74461 | opp_overlap 1694577 1694584, overlap 1694575 1694584 GACGCAGTCTTAAAC GCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGT TTAGCTGTTTTCATA TERM 2112 1694577 - 1694613 + T 100 -19.7 -3.85786 | opp_overlap 1694576 1694575 1694584, overlap 1694584 ACGCAGTCTTAAACG CTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAG TTTAGCTGTTTTCAT TERM 2113 1694606 - 1694584 - T 100 -12.8 -4.17089 | opp_overlap 1694577 1694584, overlap 1694576 1694575 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTAGCTG TERM 2114 1694584 - 1694606 + T 100 -10.6 -4.36595 | opp_overlap 1694584 1694576 1694575, overlap 1694577 CTTAAACGCTCAAAA GGCTAGGAAA TAA TCTCCTAGCC TTTTGAGTTTAGCTG Spy49_1710c 1696409 - 1694685 - | hypothetical protein Spy49_1713 1696572 - 1698071 + | Probable dipeptidase TERM 2115 1698161 - 1698135 - T 100 -16.8 -5.15969 | opp_overlap 1698138 GCTGAAGTCAAAAAA TAAGGTCTCACA CTT TGTGAGACCTTA TCGGTATAGGAGGGG TERM 2116 1698138 - 1698158 + T 100 -14.1 -3.39327 | opp_overlap 1698135 GAAGTCAAAAAATAA GGTCTCACA CTT TGTGAGACC TTATCGGTATAGGAG Spy49_1714c 1699130 - 1698783 - | Putative transcriptional regulator TERM 2117 1699132 - 1699111 - G 87 -5.3 -5.40464 | overlap 1699105 CATGACAAAGAAAAA CAATGTATT TTCC AATACATTA AAAGTCTGTAACCAC TERM 2118 1699178 - 1699220 + r 77 -5 -5.1861 | opp_overlap 1699181, overlap 1699181 ATATCACAACTAAAA AAACAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTGTTC TTTTTTCATAGTAAG TERM 2119 1699181 - 1699217 + r 80 -6.7 -4.68456 | opp_overlap 1699181, overlap 1699178 TCACAACTAAAAAAA CAAAGATGGGATATC ATGAGTC GAAATCCAATCTTTG TTCTTTTTTCATAGT TERM 2120 1699217 - 1699181 - R 93 -7.4 -5.68023 | opp_overlap 1699181 1699178 TCACAACTAAAAAAA CAAAGATGGGATATCA TGAGT CGAAATCCAATCTTTG TTCTTTTTTCATAGT groEL 1700921 - 1699290 - | Heat shock protein 60 family chaperone GroEL TERM 2121 1700540 - 1700557 + g 70 -9.9 -2.6462 | overlap 1700521 1700539 1700537 1700543 TGGCTTTCAAGGCTT CAACAGC TGTT GCTGTTG CTGTTTCAATGCCTC groES 1701247 - 1700957 - | Heat shock protein 60 family co-chaperone GroES TERM 2122 1701278 - 1701314 + r 100 -13.4 -3.59658 | gap 1, opp_overlap 1701272 1701282, overlap 1701282 TAAAAGAATCTTTAG TAAAGTTAGCACTC-AT GTTC ATCGAGTGCTAACTTTA TATTCTATTTTATCA TERM 2123 1701310 - 1701282 - R 83 -9.8 -3.75015 | gap 1, opp_overlap 1701278 1701282 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2124 1701282 - 1701310 + r 100 -9.8 -4.3821 | gap 1, opp_overlap 1701282, overlap 1701278 AGAATCTTTAGTAAA GTTAGCACTC-AT GTTC ATCGAGTGCTAAC TTTATATTCTATTTT TERM 2125 1701381 - 1701356 - R 82 -4.1 -5.49234 | opp_overlap 1701356 1701359 ATAGTCAAGAAAAAA GAAGTTATTTT TGTA AGAATAACCTC TTTTTTTGGTGACAT TERM 2126 1701356 - 1701381 + r 82 -4.1 -5.52986 | opp_overlap 1701356, overlap 1701359 ATAGTCAAGAAAAAA GAAGTTATTTT TGTA AGAATAACCTC TTTTTTTGGTGACAT clpC 1703869 - 1701425 - | Putative endopeptidase Clp ATP-binding chain C TERM 2127 1701503 - 1701523 + g 73 -8.4 -3.63054 | opp_overlap 1701503 1701502 1701505 CAATTCTCGAGAAAG GATAAGCT CTGAT AGCTTATC TTCTATCTCAGTTTG TERM 2128 1702539 - 1702549 + g 81 -5.4 -5.04987 | ATTGGTGTTAAAGTC TCAG GTG CTGA TTTTTTCACCATGTT ctsR 1704330 - 1703869 - | Putative transcriptional regulator TERM 2129 1704501 - 1704478 - R 93 -7.4 -5.42514 | opp_overlap 1704478 GTAGAAATCAAAAAA GCAGTTGCTG TTTC CAACATCTGC TTCTCTTTAGTTACT csp 1704735 - 1704526 - | Major cold-shock protein TERM 2130 1704957 - 1704934 - R 100 -11.1 -4.20368 | CTATGGTAAGATAAA CGAGTAGAG ATTCAA CTCTACTCG CTCTCACATCACCGT Spy49_1720c 1706609 - 1705476 - | Putative transposase ahpC 1707061 - 1707621 + | Alkyl hydroperoxide reductase protein C nox3 1707642 - 1709174 + | Alkyl hydroperoxide reductase protein F TERM 2131 1709218 - 1709191 - T 100 -11.4 -4.2535 | opp_overlap 1709191 ACAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTTAAATTTTTT TERM 2132 1709191 - 1709218 + T 100 -13.6 -5.32608 | opp_overlap 1709191 ACAGCATATTTAAAA GAAGTTTTGAGC TAAC GCTCAAAGCTTC TTTTTTAAATTTTTT hutI 1710497 - 1709232 - | Imidazolonepropionase TERM 2133 1710571 - 1710587 + H 70 -7.3 -3.72695 | opp_overlap 1710571 CTCACCCACTCAATA GTTGCGA TCT TTGCAAC TTTGGTAACAACAAT TERM 2134 1711457 - 1711469 + G 70 -7.7 -3.76379 | opp_overlap 1711456 1711457 TGGCCCACAAGGAAT CGTTC ATG GAACG TTTAATACCCTCTTA hutU 1710789 - 1712819 + | Urocanate hydratase Spy49_1725 1712907 - 1713806 + | Glutamate formiminotransferase Spy49_1726 1713817 - 1714443 + | Formiminotetrahydrofolate cyclodeaminase fhs2 1714461 - 1716134 + | Formate--tetrahydrofolate ligase TERM 2135 1716273 - 1716262 - g 74 -4.4 -4.95155 | opp_overlap 1716262, overlap 1716256 TGGAGATTACAAAAA GAGA GAAT TCTC TTATCGCCTCTCAAA TERM 2136 1716736 - 1716696 - g 71 -7.6 -3.90112 | gap 1, opp_overlap 1716700 1716701 1716731, overlap 1716699 TTTGCCTCAATCAAA CAAGCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-CTTA TGGTATAAGACTTAG TERM 2137 1716733 - 1716699 - g 73 -7.1 -4.0825 | gap 1, opp_overlap 1716700 1716701 1716731, overlap 1716696 GCCTCAATCAAACAA GCCCCGCCCAAACTCC AGTA GCTGTTTGGGCAGG-C TTATGGTATAAGACT Spy49_1728 1716155 - 1716751 + | hypothetical protein Spy49_1729 1716971 - 1718314 + | Putative cationic amino acid transporter protein TERM 2138 1719093 - 1719071 - g 71 -7.6 -3.86346 | CCATTCGCCCACAAA GCGGCCAGTT GGC AACAGCCCGC AATATCCGAAACCTC hutH 1718326 - 1719867 + | Histidine ammonia-lyase hutG 1720054 - 1721040 + | Formiminoglutamase TERM 2139 1721043 - 1721064 + T 100 -10.2 -4.48175 | opp_overlap 1721043 ACAACATAGCTAAAA CCCTCTGA TTCACT TCAGAGGG TTTTCCTTAGCTTTT TERM 2140 1721064 - 1721043 - T 100 -10.2 -4.28977 | opp_overlap 1721043 ACAACATAGCTAAAA CCCTCTGA TTCACT TCAGAGGG TTTTCCTTAGCTTTT Spy49_1732c 1724145 - 1721071 - | Putative regulatory protein TERM 2141 1721708 - 1721728 + g 73 -8.3 -3.6502 | opp_overlap 1721715 AAGTCAATCGACTGT TGAAGCAGA CGC TCTGCCTCA TTTAACTCCCCAATA TERM 2142 1724689 - 1724671 - g 74 -3.9 -5.14563 | gap 1, opp_overlap 1724675, overlap 1724675 1724686 GTTGGTACTAAAAAA CAAGCTGC TGAA GCAG-TTG CTGACGAAGCAACGC TERM 2143 1724857 - 1724845 - g 71 -6.3 -4.15044 | GTTCTTCCTAAGAAA GAAGT TGC ACTTC TTAACAAACAACGCG TERM 2144 1724995 - 1724983 - g 76 -3.3 -5.23016 | opp_overlap 1724992 AAAGAAGCTAAAAAA CTTGG TAT CCCAG TCGTAGCGATGGTTG rpsB 1724449 - 1725216 + | SSU ribosomal protein S2p (SAe) TERM 2145 1726161 - 1726140 - g 78 -2.9 -5.42265 | overlap 1726130 1726141 GCAAACCAGAAAAAA TCTGGGACA AAAT CATCCCAGG TAAAATGGACCGCTT tsf 1725350 - 1726390 + | Translation elongation factor Ts TERM 2146 1726418 - 1726443 + T 89 -7.6 -5.24796 | opp_overlap 1726418 1726420 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTATCAA TERM 2147 1726443 - 1726418 - T 71 -3.2 -5.11033 | opp_overlap 1726418, overlap 1726420 GATAAGTCTAAAAAA GGCAACCTTC TTTCCT GAGGGTTGTC TTTTTGTTGTATCAA TERM 2148 1726483 - 1726513 + T 77 -5.4 -4.91109 | opp_overlap 1726486, overlap 1726484 1726486 CAATAAGGAAGCAAA AAACTGATCCTGTG TTT CACAGAATCAGTCA TTTTTATAATCACAG TERM 2149 1726484 - 1726512 + T 77 -8.9 -3.54183 | opp_overlap 1726486, overlap 1726483 1726486 AATAAGGAAGCAAAA AACTGATCCTGTG TTT CACAGAATCAGTC ATTTTTATAATCACA TERM 2150 1726510 - 1726486 - T 100 -13.7 -5.32565 | opp_overlap 1726486 1726484 1726483 TAAGGAAGCAAAAAA CTGATCCTGTG TTT CACAGAATCAG TCATTTTTATAATCA TERM 2151 1726486 - 1726510 + T 89 -11.5 -3.34102 | opp_overlap 1726486, overlap 1726484 1726483 TAAGGAAGCAAAAAA CTGATCCTGTG TTT CACAGAATCAG TCATTTTTATAATCA pepO 1728451 - 1726556 - | Putative endopeptidase O TERM 2152 1727717 - 1727703 - G 77 -6.4 -4.57341 | overlap 1727704 AATTCTGTCCAAAAA CGTTCC TCA GGAACA ATAACCTTGTCAGGT TERM 2153 1728661 - 1728623 - R 100 -16.2 -3.28712 | opp_overlap 1728626 1728632, overlap 1728626 1728632 CTTTTTTCGTGACAA TCACCAAAAGCCTGAGGC CTA ACCTCAGGCTTTTAGTTA GTTTTCAGCTAAGAT TERM 2154 1728658 - 1728626 - R 100 -17.9 -2.82623 | opp_overlap 1728626 1728632, overlap 1728623 1728632 TTTTCGTGACAATCA CCAAAAGCCTGAGGC CTA ACCTCAGGCTTTTAG TTAGTTTTCAGCTAA TERM 2155 1728626 - 1728658 + r 100 -15 -3.68366 | opp_overlap 1728626 1728623 1728632, overlap 1728632 TTTTCGTGACAATCA CCAAAAGCCTGAGG CCTAA CCTCAGGCTTTTAG TTAGTTTTCAGCTAA TERM 2156 1728652 - 1728632 - R 100 -13.3 -4.37527 | opp_overlap 1728626 1728632, overlap 1728626 1728623 TGACAATCACCAAAA GCCTGAGGC CTA ACCTCAGGC TTTTAGTTAGTTTTC TERM 2157 1728632 - 1728652 + r 100 -12.6 -4.5528 | opp_overlap 1728632 1728626 1728623, overlap 1728626 TGACAATCACCAAAA GCCTGAGG CCTAA CCTCAGGC TTTTAGTTAGTTTTC dexS 1730287 - 1728659 - | Trehalose-6-phosphate hydrolase TERM 2158 1730336 - 1730308 - R 90 -11.2 -3.63744 | gap 1, opp_overlap 1730308 1730309 1730310, overlap 1730306 1730309 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAA-C GTTTTCTCTTAGTAA TERM 2159 1730308 - 1730337 + r 83 -7.9 -4.70583 | opp_overlap 1730308 1730306 1730309, overlap 1730309 1730310 TTCCTCCCTAAAATA GTTTCAGGAACTG ATCT CAGTTCCTGAACG TTTTCTCTTAGTAAA TERM 2160 1730336 - 1730309 - R 83 -11.4 -2.78032 | opp_overlap 1730308 1730309 1730310, overlap 1730308 1730306 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTCTTAGTAA TERM 2161 1730309 - 1730336 + r 89 -11.4 -3.41627 | opp_overlap 1730308 1730309 1730306, overlap 1730308 1730310 TCCTCCCTAAAATAG TTTCAGGAACTG ATCT CAGTTCCTGAAC GTTTTCTCTTAGTAA TERM 2162 1730310 - 1730335 + r 95 -14.9 -2.64253 | opp_overlap 1730308 1730309 1730306, overlap 1730309 1730308 CCTCCCTAAAATAGT TTCAGGAACTG ATCT CAGTTCCTGAA CGTTTTCTCTTAGTA Spy49_1737c 1732378 - 1730354 - | Putative PTS system enzyme II Spy49_1738 1732589 - 1733302 + | Trehalose operon transcriptional repressor TERM 2163 1733308 - 1733342 + T 95 -8.9 -5.12068 | gap 2, opp_overlap 1733315, overlap 1733311 1733315 ACCAAAATAAAGACA GAAAA--AAGCCTTGCA AAA TGCAAGGCTTGCTTTTC TTTTTCTTGACTCTG TERM 2164 1733311 - 1733337 + T 93 -8 -5.42605 | opp_overlap 1733315, overlap 1733308 1733315 AAAATAAAGACAGAA AAAAGCCTTGCA AAA TGCAAGGCTTGC TTTTCTTTTTCTTGA TERM 2165 1733315 - 1733333 + T 100 -13.2 -3.96867 | opp_overlap 1733315, overlap 1733311 1733308 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC TERM 2166 1733333 - 1733315 - T 100 -13.2 -5.51046 | opp_overlap 1733311 1733308 1733315 TAAAGACAGAAAAAA GCCTTGCA AAA TGCAAGGC TTGCTTTTCTTTTTC TERM 2167 1733514 - 1733524 + T 73 -4 -5.02476 | opp_overlap 1733489, overlap 1733494 AAACTGTAAAGAATT TGAT AAT ATCA TTTTTTAAAAACTAT Spy49_1739c 1733820 - 1733581 - | hypothetical protein TERM 2168 1734792 - 1734780 - g 79 -4.8 -5.0538 | CCTTACCTCAAAAAA CACC AAGAA GGTG CCCCAGGCTTAGCCT Spy49_1740 1734105 - 1734962 + | Glyoxalase family protein TERM 2169 1735059 - 1735038 - g 72 -4.5 -4.68655 | gap 1, overlap 1735042 CAACCGCAAAAGAAA TGATGATCCC TAA GGAATC-TCA CCCACACCTCCTTCC TERM 2170 1735182 - 1735172 - g 79 -6.8 -4.64763 | GCAGCTAAAAAAGAA CAGC AAC GCTG GCAAGACATGGCCTC TERM 2171 1735603 - 1735591 - g 72 -3.3 -5.06451 | opp_overlap 1735591 1735592, overlap 1735592 CACCATTTCAAAAAA GGCAC GAG GTGCA TTTCTCACTGCCTGT Spy49_1742 1735004 - 1735735 + | hypothetical protein TERM 2172 1735720 - 1735748 + T 82 -9.8 -3.68725 | gap 1, opp_overlap 1735727, overlap 1735720 1735727 TGAATTTGTCTATAT C-AAAAAAGAGGC CTAG GCCTCTTTTTTAG TCTTTATTCACAATT TERM 2173 1735720 - 1735747 + T 76 -10 -2.80512 | opp_overlap 1735727, overlap 1735720 1735727 TGAATTTGTCTATAT CAAAAAAGAGGC CTAG GCCTCTTTTTTA GTCTTTATTCACAAT TERM 2174 1735727 - 1735740 + T 90 -8.1 -5.34055 | opp_overlap 1735727, overlap 1735720 1735720 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT TERM 2175 1735740 - 1735727 - T 90 -8.1 -5.21709 | opp_overlap 1735727 1735720 1735720 GTCTATATCAAAAAA GAGGC CTAG GCCTC TTTTTTAGTCTTTAT nrdG 1736523 - 1735909 - | Ribonucleotide reductase of class III (anaerobic), activating protein Spy49_1744c 1737032 - 1736523 - | hypothetical protein Spy49_1745c 1737976 - 1737041 - | Putative oxidoreductase TERM 2176 1737094 - 1737082 - G 77 -7.7 -4.30987 | opp_overlap 1737078 ACTCTCCATAAGAAA GCTGA GAG TCAGC AATCTGTTGACAAAT TERM 2177 1737628 - 1737641 + g 77 -5.3 -4.90778 | opp_overlap 1737620 TGTTAAATCCTGCCA TCAGA AAAG TCTGA TTTTCTTTGGCTAAG Spy49_1746c 1738151 - 1738005 - | hypothetical protein TERM 2178 1738288 - 1738258 - R 93 -10.7 -4.06533 | opp_overlap 1738263, overlap 1738263 GAAACCATTAAACAA TAAAAGATTGCTT GCATG AAGCAACCTTTTA AGCATATCATATTTC TERM 2179 1738283 - 1738263 - R 83 -6.2 -5.02606 | opp_overlap 1738263, overlap 1738258 CATTAAACAATAAAA GATTGCTT GCATG AAGCAACC TTTTAAGCATATCAT nrdD 1740531 - 1738333 - | Ribonucleotide reductase of class III (anaerobic), large subunit TERM 2180 1738619 - 1738633 + g 71 -5 -4.63218 | overlap 1738616 TAGTCCCAAACCGCT TCCAAG GCC TTTGGA TTTTGTTGCAAAACA TERM 2181 1740577 - 1740620 + r 73 -8.5 -3.19808 | gap 1, opp_overlap 1740577, overlap 1740575 1740581 CGACAACTAAAAAAA TCAATATATTGTGT-CAAGT TTTTT GCTCGAACACAATATATTGA TATTAGATTACTTTT TERM 2182 1740620 - 1740577 - R 100 -10 -5.68023 | gap 1, opp_overlap 1740577 1740575 1740581 CGACAACTAAAAAAA TCAATATATTGTG-TCAAG TTTTTTG CTCGAACACAATATATTGA TATTAGATTACTTTT Spy49_1748c 1742187 - 1740628 - | hypothetical protein TERM 2183 1742573 - 1742559 - R 86 -5.7 -5.6473 | opp_overlap 1742558 1742559, overlap 1742551 ATAACATTAAAAAAA TAGCC CTCAC GGCTA CTTTTTAACATAGTG Spy49_1749c 1742905 - 1742600 - | hypothetical protein Spy49_1750c 1743336 - 1742917 - | Putative Holliday junction resolvase TERM 2184 1743076 - 1743062 - G 70 -8.6 -3.31144 | opp_overlap 1743067 1743072, overlap 1743066 CGTTCATCTTGATAA TGGACT GGA AGTCCA AAGAGGTGCTCTATG TERM 2185 1743067 - 1743100 + g 70 -9.7 -2.63347 | gap 1, opp_overlap 1743062 1743066, overlap 1743072 ATCTTGATAATGGAC TGGAAGTC-CAAAGAG GTG CTCTATGTGGCTTCCA TAAGTTATACTTGCA Spy49_1751c 1743602 - 1743333 - | UPF0297 protein SPy2114 TERM 2186 1743713 - 1743701 - R 100 -7.7 -5.81412 | opp_overlap 1743701 GGTATTTAAAAAAAA GCTCT ACA AGAGC TTTTAGAGCGCAGCA TERM 2187 1743701 - 1743713 + r 76 -7.7 -4.07568 | opp_overlap 1743701 GGTATTTAAAAAAAA GCTCT ACA AGAGC TTTTAGAGCGCAGCA TERM 2188 1743726 - 1743739 + r 70 -8.1 -3.29187 | overlap 1743722 AGCTTTTAGAGCGCA GCACG TAAT CGTGC TTCAGTATTTTCAAT Spy49_1752c 1744114 - 1743716 - | hypothetical protein TERM 2189 1744057 - 1744069 + g 77 -7.7 -4.1711 | GCTTATGGGCATTTA GCCAA GTT TTGGC TTTCTTGCAGCTCGT TERM 2190 1744178 - 1744193 + r 100 -7.6 -5.79588 | opp_overlap 1744178 1744176, overlap 1744169 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2191 1744193 - 1744178 - R 71 -7.6 -3.5511 | opp_overlap 1744169 1744178, overlap 1744176 TCTTATCTATAAATA TAGGTC TTTG GACCTA TTTTTTTAATTTTAA TERM 2192 1744386 - 1744401 + r 73 -4.6 -4.88228 | opp_overlap 1744388, overlap 1744388 AAAATACATTTTAAA AAGCCC TGAA GGGCTC TTTTTAATCTTCAAT TERM 2193 1744399 - 1744388 - R 83 -7.2 -4.6644 | opp_overlap 1744386 1744388 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA TERM 2194 1744388 - 1744399 + r 73 -7.2 -4.05583 | opp_overlap 1744388, overlap 1744386 AATACATTTTAAAAA GCCC TGAA GGGC TCTTTTTAATCTTCA recA 1745541 - 1744405 - | RecA protein cinA 1746900 - 1745629 - | CinA-like protein TERM 2195 1746976 - 1746950 - R 95 -8.9 -5.15634 | opp_overlap 1746950, overlap 1746970 TATTTTATCAAAAAA TCTTCCAATTC ACGAA GAATTAGAAGA TTCTATTGAAAACAC tag 1747529 - 1746969 - | DNA-3-methyladenine glycosylase ruvA 1748135 - 1747539 - | Holliday junction DNA helicase ruvA TERM 2196 1747728 - 1747744 + g 70 -9.5 -2.73243 | overlap 1747727 GGTATGACCAGTCTC TTGTGGA GCC TCCACAA ATTTGCCAGCTAAGT lmrP 1749357 - 1748137 - | Putative integral membrane protein TERM 2197 1748613 - 1748601 - G 70 -9.1 -3.20349 | overlap 1748599 CTTGGAAACCTAACA CAGCC GTT GGCTG AAAATACAGTTTCAA mutL 1751350 - 1749368 - | DNA mismatch repair protein MutL TERM 2198 1749975 - 1749988 + g 73 -2.4 -5.28166 | CCAAAATAATCCAAT TCAG GAAATA CTGA TTTTTCTTCATTTTC TERM 2199 1750913 - 1750903 - G 79 -5.4 -5.00616 | opp_overlap 1750892 1750903 GCGTGTTGTAAAAAA GGTT TTC AACC TTAATTTTGGTTCCA TERM 2200 1751457 - 1751434 - R 89 -7.5 -5.24796 | opp_overlap 1751434 TTGACAGAACAAAAA GATGCCTTC AATATA GAAAGCATC TTTTTCATTTTCAGC TERM 2201 1751434 - 1751457 + r 79 -5.3 -5.0925 | opp_overlap 1751434 TTGACAGAACAAAAA GATGCCTTC AATATA GAAAGCATC TTTTTCATTTTCAGC mutS 1754035 - 1751480 - | DNA mismatch repair protein MutS TERM 2202 1751880 - 1751839 - G 100 -15.5 -3.25823 | gap 1, opp_overlap 1751841, overlap 1751841 GCGTTGCTACATGAA CATTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAATT CATGATAATGCGTTG TERM 2203 1751841 - 1751878 + g 100 -18.1 -3.23395 | gap 1, opp_overlap 1751841 1751839 GTTGCTACATGAACA TTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2204 1751878 - 1751841 - G 100 -18.1 -3.19602 | gap 1, opp_overlap 1751841, overlap 1751839 GTTGCTACATGAACA TTGACTAGACTTGTCAAC TTA GTTGACAAGTCT-GTCAA TTCATGATAATGCGT TERM 2205 1754000 - 1753968 - G 80 -2.1 -5.54079 | gap 1, opp_overlap 1753968 1753971 CTAAAAAGCAAAAAA GCATCTGGATAATC TTTTTT GATG-TCCAGATAC TGTTGCATTCCAGGA Spy49_1761c 1754706 - 1754371 - | Putative arginine repressor argS 1755099 - 1756790 + | Arginyl-tRNA synthetase TERM 2206 1756803 - 1756832 + F 100 -11.6 -5.5208 | opp_overlap 1756800 1756803 1756807 TAAGTAATAACATCA CTAAGGCTGTCA CATTTA TGACAGTCTTAG TTTTTTATATTATAA TERM 2207 1756832 - 1756803 - f 76 -10.1 -2.88074 | opp_overlap 1756803, overlap 1756800 1756807 TAAGTAATAACATCA CTAAGGCTGTCAC ATTT ATGACAGTCTTAG TTTTTTATATTATAA Spy49_1763 1756878 - 1757186 + | hypothetical protein TERM 2208 1757184 - 1757215 + T 82 -9 -4.04811 | opp_overlap 1757184 1757190, overlap 1757190 AGTGGGGGACCAAAA TAAAAATACAGG CTGTTTGA CCTGTATTTTTA TTTATCATAATTTCT TERM 2209 1757215 - 1757184 - T 93 -9.7 -4.25283 | opp_overlap 1757184 1757190, overlap 1757190 AGTGGGGGACCAAAA TAAAAATACAGGC TGTTTG ACCTGTATTTTTA TTTATCATAATTTCT TERM 2210 1757190 - 1757209 + T 79 -3.6 -5.40464 | opp_overlap 1757184 1757190, overlap 1757184 GGACCAAAATAAAAA TACAGG CTGTTTGA CCTGTA TTTTTATTTATCATA TERM 2211 1757209 - 1757190 - T 82 -4.3 -5.50723 | opp_overlap 1757190 1757184, overlap 1757184 GGACCAAAATAAAAA TACAGGC TGTTTG ACCTGTA TTTTTATTTATCATA Spy49_1764c 1758085 - 1757213 - | hypothetical protein Spy49_1765c 1759063 - 1758128 - | hypothetical protein Spy49_1767c 1759967 - 1759026 - | hypothetical protein TERM 2212 1759832 - 1759862 + gr 74 -4 -5.09762 | opp_overlap 1759826 1759835, overlap 1759834 1759835 TAGAGAGAATGCCAT AAAGCAGAGAAG CCGAAAT CTTCTCTGCATA TTTTTCTCTTGAAAT TERM 2213 1759834 - 1759860 + gr 73 -6.6 -4.17211 | opp_overlap 1759826 1759835, overlap 1759832 1759835 GAGAGAATGCCATAA AGCAGAGAAG CCGAAAT CTTCTCTGCA TATTTTTCTCTTGAA TERM 2214 1759835 - 1759859 + gr 77 -10.1 -3.09242 | opp_overlap 1759826 1759835, overlap 1759834 1759832 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA TERM 2215 1759859 - 1759835 - GR 87 -10.1 -3.94381 | opp_overlap 1759835 1759834 1759832, overlap 1759826 AGAGAATGCCATAAA GCAGAGAAG CCGAAAT CTTCTCTGC ATATTTTTCTCTTGA aspS 1761708 - 1759960 - | Aspartyl-tRNA synthetase TERM 2216 1760798 - 1760814 + g 70 -9.5 -2.52742 | overlap 1760797 TTGAAGTCAATTCCT TTGACAG TTA CTGTCAA GTCTTGTAAAAGCAT TERM 2217 1761948 - 1761985 + r 100 -12.2 -4.38129 | gap 1, opp_overlap 1761948 CTTACAGAAAACAAA CAGGTGCAAC-TCCCTT CTAAA AAGGGAAGTTACACCTG TTTTAGTGATTATCT TERM 2218 1761985 - 1761948 - R 100 -15.1 -4.83243 | gap 1, opp_overlap 1761948 CTTACAGAAAACAAA CAGGTGCAAC-TCCCTTC TAA AAAGGGAAGTTACACCTG TTTTAGTGATTATCT hisS 1763326 - 1762046 - | Histidyl-tRNA synthetase TERM 2219 1763480 - 1763451 - H 84 -3.7 -5.61881 | opp_overlap 1763456, overlap 1763452 TTGTAAAAATAAAAA GTTTTGTCAAGTA ACTT TACTTTACAAAAA AGATATGTTATCATA TERM 2220 1763479 - 1763452 - H 73 -7.2 -3.95502 | opp_overlap 1763456, overlap 1763451 TGTAAAAATAAAAAG TTTTGTCAAGTA ACTT TACTTTACAAAA AAGATATGTTATCAT TERM 2221 1763492 - 1763482 - H 76 -4 -5.26316 | overlap 1763484 TTACTTTACAAAAAA GATA TGT TATC ATAGTGAAGTTGATG rpmF 1763546 - 1763728 + | LSU ribosomal protein L32p rpmG2 1763744 - 1763893 + | LSU ribosomal protein L33p Spy49_1772c 1764157 - 1763933 - | hypothetical protein TERM 2222 1764046 - 1764072 + g 93 -10.9 -4.946 | opp_overlap 1764045 GGATATTGAAGTTAG GCCCTGTTATC ATTTC GATGGCAGGGC TTTTTAATATTTGGT cadD 1764186 - 1764800 + | Cadmium resistance protein cadX 1764812 - 1765150 + | Putative cadmium efflux system accessory TERM 2223 1765946 - 1765928 - g 74 -4.6 -4.97824 | opp_overlap 1765928 AAAACTCAAAGAAAA TCCACTAT TTA ATATTGGA TTCCTGGTTGATGAT Spy49_1775 1765194 - 1766117 + | hypothetical protein Spy49_1777 1766183 - 1766935 + | hypothetical protein Spy49_1778 1766932 - 1767534 + | hypothetical protein TERM 2224 1767541 - 1767579 + F 84 -5.3 -5.55695 | gap 2 AAGCGTTAATTCCTT GGGGCTG--TGGCTTGCGT TAA GCAAAAGCCAGACAGCCCC TTTTTTATATTCTTA TERM 2225 1767804 - 1767849 + F 77 -8.5 -3.53091 | opp_overlap 1767809 1767814, overlap 1767806 1767807 1767814 AAGTAAAATAATTGA GATGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCGTG TTTAAAAAAACAAAT TERM 2226 1767806 - 1767847 + F 87 -11.1 -3.34398 | opp_overlap 1767809 1767814, overlap 1767804 1767807 1767814 GTAAAATAATTGAGA TGAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTCG TGTTTAAAAAAACAA TERM 2227 1767807 - 1767846 + F 86 -12.4 -2.60496 | opp_overlap 1767809 1767814, overlap 1767806 1767804 1767814 TAAAATAATTGAGAT GAGAAAAGCCTATGAAAT GAAC GTTTCAAAGGCTTTTTTC GTGTTTAAAAAAACA TERM 2228 1767814 - 1767839 + F 89 -6.9 -5.32699 | opp_overlap 1767814 1767809, overlap 1767807 1767806 1767804 ATTGAGATGAGAAAA GCCTATGAAAT GAAC GTTTCAAAGGC TTTTTTCGTGTTTAA TERM 2229 1767839 - 1767814 - f 74 -6.2 -4.51378 | opp_overlap 1767807 1767806 1767804 1767814, overlap 1767809 ATTGAGATGAGAAAA GCCTATGAAA TGAACG TTTCAAAGGC TTTTTTCGTGTTTAA TERM 2230 1769342 - 1769352 + G 84 -6.8 -4.84761 | overlap 1769338 ATCGGAGGAGTCCTA GCCA TCT TGGC TTTTTCTAAAAGTAT Spy49_1779 1768745 - 1769587 + | hypothetical protein TERM 2231 1769622 - 1769611 - T 70 -4.4 -4.82901 | GGTTGTTGACAAAAA GTTG ACGC CAAC AAACTAGTGCTCTAT Spy49_1780c 1770274 - 1769591 - | hypothetical protein TERM 2232 1769640 - 1769666 + g 100 -12.4 -5.29846 | ACTAGTGCTCTATCT CCCCTTAGATTT TTA ATATCTAAGGGG TTTTTCTTTGCAATT Spy49_1781 1770481 - 1770807 + | hypothetical protein Spy49_1782 1770794 - 1771381 + | hypothetical protein TERM 2233 1771704 - 1771681 - g 71 -5.2 -4.59109 | overlap 1771682 CATATTTCTGAAAAA CCCAGAGATG TCAT CATCACCGGA GGTATTGAACTGATC Spy49_1783 1771378 - 1772451 + | hypothetical protein TERM 2234 1772473 - 1772491 + T 75 -8.2 -3.79906 | opp_overlap 1772473 1772484 CAAGACAATAAAAAA CTTGACAG AAA TTGTCAAG TTATTGTCAAAATAA TERM 2235 1772491 - 1772473 - T 93 -7.5 -5.64304 | opp_overlap 1772473, overlap 1772484 CAAGACAATAAAAAA CTTGACA GAAAT TGTCAAG TTATTGTCAAAATAA TERM 2236 1772545 - 1772516 - T 83 -5 -5.57729 | opp_overlap 1772516 AAATAAGACAAAAAA CAGCATCTAGTG TAACTG CCTTAGATGCTG TTTTTTTTGAGGTTA TERM 2237 1772516 - 1772545 + T 100 -7.9 -5.81032 | opp_overlap 1772516 AAATAAGACAAAAAA CAGCATCTAGTGT AACT GCCTTAGATGCTG TTTTTTTTGAGGTTA Spy49_1784c 1774861 - 1772567 - | Phage infection protein TERM 2238 1774956 - 1774926 - H 90 -4 -5.84432 | opp_overlap 1774930, overlap 1774927 1774928 1774930 TACAAGAGAAAAAAA TTCACTTTTGGACA TTA TGTCTAAAAGTGTT CAAAAGGAGAGATGG TERM 2239 1774955 - 1774927 - H 76 -7.5 -4.08219 | opp_overlap 1774930, overlap 1774926 1774928 1774930 ACAAGAGAAAAAAAT TCACTTTTGGACA TTA TGTCTAAAAGTGT TCAAAAGGAGAGATG TERM 2240 1774954 - 1774928 - H 83 -11 -3.02491 | opp_overlap 1774930, overlap 1774927 1774926 1774930 CAAGAGAAAAAAATT CACTTTTGGACA TTA TGTCTAAAAGTG TTCAAAAGGAGAGAT TERM 2241 1774930 - 1774952 + H 77 -10 -3.01712 | opp_overlap 1774928 1774927 1774926 1774930 AGAGAAAAAAATTCA CTTTTGGACA TTA TGTCTAAAAG TGTTCAAAAGGAGAG Spy49_1785 1774975 - 1775511 + | Putative transcriptional regulator TERM 2242 1775645 - 1775615 - T 83 -11.4 -2.94218 | opp_overlap 1775617 1775623, overlap 1775623 ATTTGTTATGAGATA TAAAAAAAGCCTAT TAA ATAGGCTTTTTGTA AGTTTAATCTTAAAA TERM 2243 1775617 - 1775643 + T 75 -9.6 -2.71059 | opp_overlap 1775615 1775623, overlap 1775623 TTGTTATGAGATATA AAAAAAGCCTAT TAA ATAGGCTTTTTG TAAGTTTAATCTTAA TERM 2244 1775637 - 1775623 - T 95 -8.6 -5.76633 | opp_overlap 1775617 1775623, overlap 1775615 TGAGATATAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA TERM 2245 1775623 - 1775637 + T 95 -8.6 -4.94992 | opp_overlap 1775623 1775615, overlap 1775617 TGAGATATAAAAAAA GCCTAT TAA ATAGGC TTTTTGTAAGTTTAA rpsD 1776272 - 1775661 - | SSU ribosomal protein S4p (S9e) TERM 2246 1776995 - 1776983 - R 100 -9.1 -5.28942 | TATTGTAAAGAAAAA GCCTC TAT GAGGC AAAAATCAATCTAAA Spy49_1787c 1777273 - 1777001 - | hypothetical protein dnaC 1778657 - 1777290 - | Replicative DNA helicase TERM 2247 1778264 - 1778296 + g 91 -13.5 -2.62184 | opp_overlap 1778255 1778266 TTAAAATTTCATCAT AAGCTAGGTTGACAG ATT CTGTCAACCTAGCAA TAATATCACGCAACA TERM 2248 1778294 - 1778266 - G 100 -20.5 -3.43689 | opp_overlap 1778264, overlap 1778255 AAAATTTCATCATAA GCTAGGTTGACAG ATT CTGTCAACCTAGC AATAATATCACGCAA rplI 1779139 - 1778687 - | LSU ribosomal protein L9p Spy49_1790c 1781112 - 1779136 - | DHH family protein TERM 2249 1779389 - 1779424 + g 85 -4.2 -5.67063 | gap 1, overlap 1779390 1779393 GACAGTATCGTATCT GCAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATGA TTTTTTTCTCCTGCA TERM 2250 1779390 - 1779423 + g 75 -7.7 -3.99153 | gap 1, overlap 1779389 1779393 ACAGTATCGTATCTG CAGCTTTACTAGCAAT AAC ATTGCTA-TAAAGATG ATTTTTTTCTCCTGC TERM 2251 1781051 - 1781031 - G 77 -10.5 -3.32844 | TTTTTGATTGCATAA TACTGACAC AAA GTGCCAGTA GTCCAAATAAAATCA TERM 2252 1781166 - 1781150 - R 84 -5.8 -5.34555 | TTATACCATAAAAAA GCCCTG AAATA CAGAGC TTCCACTTGCTTTGA gidA 1783100 - 1781202 - | Glucose inhibited division protein A Spy49_1792c 1783541 - 1783224 - | hypothetical protein trmU 1785437 - 1784316 - | tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TERM 2253 1784781 - 1784810 + g 72 -10.1 -2.65527 | overlap 1784780 1784779 AGTCATCATGCGACC TTTTTGTGCCGGT AAGT ACTGGCTCAAAAA CTGTTTGAAATTCTT TERM 2254 1784883 - 1784893 + g 71 -6.8 -4.10179 | CGTTGCAAGCCCTGC TCGC TCA GCGA TTTCTCTAACTTCTG TERM 2255 1785474 - 1785502 + H 74 -3.3 -5.21236 | opp_overlap 1785474 1785477, overlap 1785477 TAAGATAGAAAAAGA TAATCATCATATT ATG AATATTATGATTC TTTTTCTTATCAGTT TERM 2256 1785477 - 1785499 + H 72 -5 -4.68512 | opp_overlap 1785477 1785474, overlap 1785474 GATAGAAAAAGATAA TCATCATATT ATG AATATTATGA TTCTTTTTCTTATCA TERM 2257 1785627 - 1785640 + H 76 -2.5 -5.55769 | GGAATGCCAATCATT TTATT GCTC AATAA TTTTTTATTATAAAA sdhB 1785735 - 1786406 + | L-serine dehydratase, beta subunit TERM 2258 1786937 - 1786959 + G 80 -10.6 -3.38812 | overlap 1786935 GCAGAAGTTGGTTCT GCAGCTGC TATGAGT GCAGCTGC TCTTGTTAAAGCAGC sdhA 1786418 - 1787290 + | L-serine dehydratase, alpha subunit TERM 2259 1787646 - 1787683 + T 100 -14.5 -4.1552 | opp_overlap 1787651, overlap 1787651 AGACAATTAAATACC AAAAACCTATTGTTAGT AAAT ACTAACAATAGGTTTTA TTTCTTCCAGCCATG TERM 2260 1787651 - 1787678 + T 100 -14.4 -5.09762 | opp_overlap 1787651, overlap 1787646 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG TERM 2261 1787678 - 1787651 - T 100 -14.4 -4.946 | opp_overlap 1787646 1787651 ATTAAATACCAAAAA CCTATTGTTAGT AAAT ACTAACAATAGG TTTTATTTCTTCCAG Spy49_1796c 1788318 - 1787704 - | hypothetical protein TERM 2262 1788098 - 1788111 + g 76 -2.4 -5.41941 | GGAATAGGCTCCGAA GCAA TGCTCT TTGC TTTTTCTTTGCTTTC TERM 2263 1788512 - 1788522 + r 74 -6.8 -4.39318 | opp_overlap 1788497 1788512, overlap 1788493 GTTCTGTATTGAACA GGAC TCA GTCC TTTTAGATTTCGTTC TERM 2264 1788645 - 1788605 - R 100 -9.2 -4.84642 | opp_overlap 1788617 1788624 CTCAAATGAAGAAAA GTACCTCAATGATTAGAT GTTGT ATCTAACTTTTGAGGTAC AATTCACTTCTTACT Spy49_1797c 1789490 - 1788690 - | ABC-type cobalt transport system, permease component CbiQ Spy49_1798c 1790325 - 1789483 - | ABC-type cobalt transport system, ATPase component CbiO Spy49_1799c 1791191 - 1790301 - | hypothetical protein TERM 2265 1790391 - 1790407 + gr 77 -9.5 -3.29263 | opp_overlap 1790393 ACCTTCTTCTTGAAG CATCTGT ACA ACAGATG TTGTAAAAGGGATAT TERM 2266 1790576 - 1790586 + gr 79 -3.2 -5.4588 | CAGTCAGCTGGTAGT CGTC ACG GATG TTTTTTATAGTTTTG TERM 2267 1791067 - 1791080 + gr 73 -2.3 -5.20606 | ACATGAAACGATACG CCATC TAAT GTTGG TTTTTCTTGGTCTTT pgsA 1791684 - 1791142 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Spy49_1801c 1792723 - 1791698 - | hypothetical protein Spy49_1802c 1794062 - 1792773 - | hypothetical protein Spy49_1803c 1795308 - 1794064 - | hypothetical protein TERM 2268 1794900 - 1794910 + g 78 -2.6 -5.50499 | CTGACTCGATGTAGT TAAT CAA ATTA TTTTTTTCAGTCTCA TERM 2269 1795560 - 1795601 + H 89 -7.7 -5.31158 | opp_overlap 1795569, overlap 1795563 1795564 AACAATTCAATTATT TTGAGATAATTTATTTAAT TTAT ATTAAATAAATTATCCTGA TTTTTCCTTTTTTTG TERM 2270 1795563 - 1795598 + H 79 -9.4 -3.39564 | opp_overlap 1795569, overlap 1795560 1795564 AATTCAATTATTTTG AGATAATTTATTTAAT TTAT ATTAAATAAATTATCC TGATTTTTCCTTTTT TERM 2271 1795564 - 1795597 + H 87 -12.9 -2.61298 | opp_overlap 1795569, overlap 1795563 1795560 ATTCAATTATTTTGA GATAATTTATTTAAT TTAT ATTAAATAAATTATC CTGATTTTTCCTTTT hasA 1795670 - 1797007 + | hyaluronan synthase hasB 1797043 - 1798251 + | putative UDP-glucose 6-dehydrogenase TERM 2272 1799363 - 1799322 - g 100 -20.6 -5.01732 | opp_overlap 1799322 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA TERM 2273 1799322 - 1799363 + G 100 -20.6 -5.4148 | opp_overlap 1799322 AAGCTTTGGAAAAAA GTAAAGTACCAACACATT CAAAGT AATGTGTTGGTACTTTAC TTTTTTCCTTGTTTA hasC 1798433 - 1799347 + | UDP-glucose pyrophosphorylase Spy49_1809 1799655 - 1800068 + | hypothetical protein recF 1800070 - 1801176 + | Recombination protein F TERM 2274 1801223 - 1801177 - T 95 -14.8 -3.20382 | opp_overlap 1801191, overlap 1801190 1801191 TCTGATATTCACTAA TAACATCAAAAAAGGGTTCAGT TAA ACTGAGCCTTTTTTTGATATTA TGTGGCGATTAAGAT TERM 2275 1801210 - 1801190 - T 76 -3.9 -5.31545 | opp_overlap 1801191, overlap 1801177 1801191 AATAACATCAAAAAA GGGTTCAGT TAA ACTGAGCCT TTTTTTGATATTATG TERM 2276 1801209 - 1801191 - T 73 -7.4 -3.76487 | opp_overlap 1801191, overlap 1801190 1801177 ATAACATCAAAAAAG GGTTCAGT TAA ACTGAGCC TTTTTTTGATATTAT TERM 2277 1801191 - 1801209 + T 100 -9.6 -5.6473 | opp_overlap 1801191 1801190 1801177 ATAACATCAAAAAAG GGTTCAGT TAA ACTGAGCC TTTTTTTGATATTAT Spy49_1811c 1802095 - 1801232 - | hypothetical protein TERM 2278 1802275 - 1802253 - R 93 -6.2 -5.80817 | TTTAATATAAAAAAA GAGCTGGCAC AAT ATGTCAGCCC TTAAAGTTACTAAAT guaB 1803779 - 1802298 - | inosine monophosphate dehydrogenase TERM 2279 1803954 - 1803979 + r 81 -10.7 -2.8805 | opp_overlap 1803977 AAAAAATTCATTTGG GTCTTATTTTT AATC AAAAATAAGAC TATATAAAACATAAT trsA 1805109 - 1804087 - | tryptophanyl-tRNA synthetase TERM 2280 1805172 - 1805146 - H 83 -6.5 -4.84527 | opp_overlap 1805146, overlap 1805148 TTGATATAGCAAAAA GTCCCCACGCT ATTAA AACGTGAGGGC GTTATTACAAGTAAT TERM 2281 1805759 - 1805749 - g 70 -2.6 -5.07652 | TCTTGGAAAACAAAA TTTT ATT AAAA CACTTTATGGTTCTT Spy49_1814 1805528 - 1806400 + | hypothetical membrane spanning protein Spy49_1815 1806479 - 1808086 + | ABC transporter ATP-binding protein TERM 2282 1808117 - 1808146 + F 88 -7.1 -5.1361 | opp_overlap 1808117, overlap 1808120 CCTTATGATAAATGA GGTGGCTAAGAAG ATCT CTTCCTAGCCCTC TTTTTTAAAATTTGT TERM 2283 1808120 - 1808143 + F 77 -9.6 -3.09328 | opp_overlap 1808117, overlap 1808117 TATGATAAATGAGGT GGCTAAGAAG ATCT CTTCCTAGCC CTCTTTTTTAAAATT TERM 2284 1809322 - 1809342 + G 80 -7.7 -4.37527 | opp_overlap 1809322, overlap 1809327 AAGAAGTGACTCAAA TAAAAGCAG GTT TTGCTTTTA TTTTCCTCATTATAC TERM 2285 1809327 - 1809337 + G 72 -3.2 -5.14626 | opp_overlap 1809322, overlap 1809322 GTGACTCAAATAAAA GCAG GTT TTGC TTTTATTTTCCTCAT Spy49_1817 1808184 - 1810760 + | ABC transporter, permease protein TERM 2286 1810861 - 1810809 - T 71 -8.7 -3.12432 | opp_overlap 1810810 1810815, overlap 1810815 AAATGAGTCAATATA CTAAAAGCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGCTTTTAT CGATTTTACTAATAA TERM 2287 1810810 - 1810860 + T 84 -12.2 -2.78495 | opp_overlap 1810809 1810815, overlap 1810815 AATGAGTCAATATAC TAAAAGCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGCTTTTA TCGATTTTACTAATA TERM 2288 1810815 - 1810855 + T 82 -7.7 -4.54477 | opp_overlap 1810809 1810815, overlap 1810810 GTCAATATACTAAAA GCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGC TTTTATCGATTTTAC TERM 2289 1810855 - 1810815 - T 81 -7.7 -4.43213 | opp_overlap 1810815 1810810, overlap 1810809 GTCAATATACTAAAA GCATCTCAAGAGCTAGA CAAATAT TCTAATACTTGAGATGC TTTTATCGATTTTAC TERM 2290 1811244 - 1811226 - T 100 -10.4 -5.99154 | opp_overlap 1811225 1811224 TACTAAATAAAAAAA TCCTAAGA TTA TCTTAGGA AATATCTTATCACTC TERM 2291 1811357 - 1811343 - T 95 -5 -6.20267 | GGAAAAAGAAAAAAA TTGCCA AAA TGACAA TTGCGATAGTCCGTA TERM 2292 1812655 - 1812666 + T 74 -2.2 -5.4756 | AATTCTAGTATATCA GACG AACA TGTC TTTTTTGTTGCACTT TERM 2293 1812860 - 1812874 + T 95 -6.4 -5.88197 | opp_overlap 1812853 1812860 ATCAAAGATAAAAAA GCACTG TTT TAGTGC TTTTTTTGTATTTAC TERM 2294 1812874 - 1812860 - T 84 -5.7 -5.5762 | opp_overlap 1812860, overlap 1812853 ATCAAAGATAAAAAA GCACT GTTTT AGTGC TTTTTTTGTATTTAC Spy49_1820c 1813484 - 1813005 - | hypothetical protein TERM 2295 1813585 - 1813552 - H 89 -13.5 -2.71011 | opp_overlap 1813556 1813560 1813562, overlap 1813556 1813562 ATTTTTCTTCAACTA CTAATAAAAACCTTT GTAC AAAGGTCTTTATTAG TAAAAAGAAAAGTAA TERM 2296 1813581 - 1813556 - H 73 -8.5 -3.27298 | opp_overlap 1813556 1813560 1813562, overlap 1813552 1813562 TTCTTCAACTACTAA TAAAAACCTTT GTAC AAAGGTCTTTA TTAGTAAAAAGAAAA TERM 2297 1813575 - 1813562 - H 79 -5.3 -5.16071 | opp_overlap 1813560 1813556 1813562, overlap 1813556 1813552 AACTACTAATAAAAA CCTTT GTAC AAAGG TCTTTATTAGTAAAA TERM 2298 1813624 - 1813592 - H 100 -19.5 -4.77036 | opp_overlap 1813592, overlap 1813597 CTTTATTAGTAAAAA GAAAAGTAATCCACA GCC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2299 1813592 - 1813624 + H 100 -19.5 -6.4275 | opp_overlap 1813592 1813597 CTTTATTAGTAAAAA GAAAAGTAATCCACA GCC TGTGGATTACTTTTC TTTTTTTTATTTTTA TERM 2300 1813619 - 1813597 - H 100 -13.6 -5.3104 | opp_overlap 1813592, overlap 1813592 TTAGTAAAAAGAAAA GTAATCCACA GCC TGTGGATTAC TTTTCTTTTTTTTAT TERM 2301 1814666 - 1814684 + G 75 -9.6 -3.27475 | opp_overlap 1814664, overlap 1814664 GCCAAATTAATATTC CCACTAGT GTA ACTGGTGG TATTGTAGTAGCAGA degP 1813696 - 1814919 + | Endopeptidase degP TERM 2302 1814952 - 1814980 + F 100 -17.7 -4.55093 | opp_overlap 1814944 1814954 1814959, overlap 1814959 TATTACATTTTATCA CATAAAACAGTCC AAA GGACTGTTTTATG TTTCTTATTCTATCC TERM 2303 1814978 - 1814954 - f 95 -14.5 -2.80443 | opp_overlap 1814952 1814959, overlap 1814944 1814959 TTACATTTTATCACA TAAAACAGTCC AAA GGACTGTTTTA TGTTTCTTATTCTAT TERM 2304 1814959 - 1814973 + F 100 -10 -4.91194 | opp_overlap 1814954 1814959, overlap 1814952 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT TERM 2305 1814973 - 1814959 - f 100 -10 -4.57353 | opp_overlap 1814959 1814952, overlap 1814954 TTTTATCACATAAAA CAGTCC AAA GGACTG TTTTATGTTTCTTAT parB 1814978 - 1815784 + | Chromosome partitioning protein parB