TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.579544 %AT, 1777068 nt, 10939 terms. Intergenic: 0.640798 %AT, H2T: 381551 nt, 2213 terms; T2T: 93805 nt, 1631 terms; H2H: 81025 nt, 744 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|146319850|ref|NC_009443.1| Streptococcus suis 98HAH33, complete genome (length 2095698) dnaA 1 - 1374 + | chromosomal replication initiation protein SSU98_0002 1528 - 2460 + | DNA polymerase sliding clamp subunit SSU98_0003 2457 - 2663 + | DNA polymerase sliding clamp subunit TERM 1 2671 - 2697 + F 95 -13.2 -3.27475 | opp_overlap 2671 2668 2665 2677, overlap 2677 CCAACTAAATAATAT TAAGAACGGCTA AAC TAGCCGTTTTTA TGTTATACTAAAAAA TERM 2 2697 - 2671 - f 79 -11 -2.77256 | opp_overlap 2671 2677, overlap 2668 2665 2677 CCAACTAAATAATAT TAAGAACGGCTA AAC TAGCCGTTTTTA TGTTATACTAAAAAA TERM 3 2677 - 2691 + F 100 -10 -5.16133 | opp_overlap 2677 2671 2668 2665, overlap 2671 AAATAATATTAAGAA CGGCTA AAC TAGCCG TTTTTATGTTATACT TERM 4 2691 - 2677 - f 85 -10 -3.86781 | opp_overlap 2671 2677, overlap 2671 2668 2665 AAATAATATTAAGAA CGGCTA AAC TAGCCG TTTTTATGTTATACT TERM 5 2853 - 2831 - g 71 -3.4 -5.04377 | TCAAAATAAAAGAAA GTTATCCACA GCT TGCAGTTAAC ATTTTTATGACAGTT SSU98_0004 2755 - 3636 + | sphingosine kinase and enzymes related to diacylglycerol kinase SSU98_0005 3646 - 3849 + | hypothetical protein TERM 6 3857 - 3877 + F 83 -6.9 -4.7254 | AAGCCTAGTTGACAG TTTGCAACT ACT GGTTGCGAA TTTTTCCTAAAAAGT SSU98_0006 3947 - 4312 + | transcriptional regulator TERM 7 4317 - 4334 + F 90 -7 -5.07941 | opp_overlap 4317 ATTATTTTTAACGAA GCTTGC CAAACA GCAAGC TTTTTCTCTACTTTT TERM 8 4889 - 4875 - g 71 -5 -4.65895 | opp_overlap 4883, overlap 4881 4883 GCCCGTACGCAAAAA GACAAA GAT TCTGTC GCAGAATTTGCAGTT SSU98_0007 4380 - 5258 + | GTPase, translation factor SSU98_0008 5246 - 5512 + | GTPase, translation factor TERM 9 5626 - 5647 + F 91 -9.5 -4.49756 | overlap 5642 AGAGGATGATTACTT GGTTGGAAA GCTT TTTCCAGCC TTTTGGTATTTAAGG SSU98_0009 5670 - 6239 + | peptidyl-tRNA hydrolase SSU98_0010 6239 - 7201 + | transcription-repair coupling factor TERM 10 9381 - 9359 - g 70 -7.8 -3.63097 | overlap 9357 AGCGTATAAAGAATA TTGACAGTCG TGT CAACTATCAA GAATTGCAAGAAGAA SSU98_0011 7195 - 9732 + | transcription-repair coupling factor SSU98_0012 9873 - 10055 + | ribosome-associated heat shock protein implicated in the recycling of the 50S subunit SSU98_0013 10042 - 10410 + | septum formation initiator SSU98_0014 10407 - 10520 + | hypothetical protein TERM 11 11717 - 11733 + G 71 -4.3 -4.82548 | overlap 11730 TGTAGCGATTGTTTA CGCAGGG TCT CCCTTTG TTTTATCTATTTTTA SSU98_0015 10533 - 11813 + | Beta-lactamase class A TERM 12 11835 - 11852 + G 73 -2.7 -5.14965 | opp_overlap 11835 GATAGATTTTTAAAA GTGAC ACTGGATG GTCAC TTTTTTGATAAACAT TERM 13 13050 - 13040 - g 78 -4 -5.243 | TAAATCAGTAAAAAA TGAT ATA ATCA AAGCTACCTTATATA SSU98_0016 11814 - 13082 + | ATPase TERM 14 13154 - 13136 - g 73 -6 -4.51812 | TTTCAGAAGAAGAAA TCGTTGCA AAA TGCAAAGA ACTCGGTCAAATTCT SSU98_0017 13090 - 13632 + | hypoxanthine-guanine phosphoribosyltransferase TERM 15 13675 - 13691 + G 73 -5.2 -4.6265 | opp_overlap 13675 AATCAACCAAATAAA GGATTT ATAAA AAATCC TTTTCTCATTATTCT TERM 16 13691 - 13675 - g 73 -5.2 -4.59212 | opp_overlap 13675 AATCAACCAAATAAA GGATTT ATAAA AAATCC TTTTCTCATTATTCT TERM 17 14413 - 14423 + G 73 -5.4 -4.6759 | CCATTCTTCTCCATT TCTG GTT CAGA TTTTGTTGAAATGTT TERM 18 14501 - 14491 - g 78 -2.4 -5.52909 | GAAGATGCAAAAAAA GCAG CAC CAGC CATTATTTTCATCGA SSU98_0018 13654 - 15627 + | ATP-dependent Zn protease TERM 19 15686 - 15717 + F 100 -10.2 -5.1101 | opp_overlap 15686 TAAAATAACCACAAA GCCTTCGCTAAG TACATAAT CTTGGCGAGGGC TTTTTTACATGATAC SSU98_0019 15965 - 16435 + | Signal transduction histidine kinase TERM 20 16838 - 16817 - T 71 -8.7 -3.25317 | overlap 16815 16813 TGATAAACTAAGATA GTTGTCGCG AGAG CGCGATAAC GACAAGACCTTTGAA TERM 21 17983 - 17996 + T 73 -6.7 -4.1891 | ACATCCCGATGACCG CCCTA GAGA TAGGG TTTCTCTTCGGAGCA TERM 22 19208 - 19191 - T 79 -11.3 -2.77043 | opp_overlap 19189, overlap 19190 GGCAGGAGGGCAAAC CGAGGAG TTTA CTCCTCG CGGGTTGTAGGTGCA TERM 23 19265 - 19250 - T 74 -7.6 -3.92604 | AAGAGTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 24 19288 - 19298 + T 74 -2.6 -5.28176 | AGAGTAATAGCCTCG TATT TAA AATA TTTTTTATACCTAGC TERM 25 21989 - 22001 + T 78 -10.5 -3.09327 | ACGCCTGAAGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 26 22324 - 22346 + T 72 -8.4 -3.55444 | GCGGAATTGGCAGAC GCACCAGATT TAG GATCTGGCGC TTTCGGGCGTGGGGG TERM 27 22524 - 22504 - T 78 -9.7 -3.31263 | overlap 22506 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAAT TERM 28 22522 - 22506 - T 80 -10.9 -3.22475 | overlap 22504 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA SSU98_0021 23270 - 23172 - | hypothetical protein TERM 29 23513 - 23536 + H 95 -8.2 -4.90002 | opp_overlap 23513 ATTCTCCGTAGTGAA CGAGATTATC GCTT GATATTCTCG TTTTATTGTATCTTG SSU98_0022 23565 - 24401 + | putative cell shape-determining protein MreC TERM 30 24918 - 24938 + F 91 -6.2 -5.52986 | opp_overlap 24918, overlap 24920 ATAGAAATGTAATAA TTGCGTAA TATAC TTACGCGA TTTTTTTGATAAAAT SSU98_0023 24952 - 26247 + | hypothetical protein TERM 31 26260 - 26283 + F 86 -5.3 -5.27335 | opp_overlap 26260 TAAGAAATTTTCAAA TAGAGCGTG TGGATT TGCGCTCTA TTTTTGTTTGAAAAA SSU98_0024 26350 - 27318 + | ribose-phosphate pyrophosphokinase TERM 32 27325 - 27344 + F 100 -10.8 -5.25805 | opp_overlap 27328 GTTAAATAGGTATGA GAAGAGTC AAAT GACTCTTC TTTTTTACATTTATT TERM 33 27568 - 27555 - g 76 -8.1 -4.22883 | opp_overlap 27555 27553 GATCATGTAAAAGAA GCAGC TAAG GCTGC TATTGATGCTGATCA SSU98_0025 27405 - 28583 + | aromatic amino acid aminotransferase SSU98_0026 28570 - 29352 + | DNA repair protein RecO SSU98_0027 29349 - 30356 + | putative glycerol-3-phosphate acyltransferase PlsX SSU98_0028 30349 - 30597 + | Acyl carrier protein TERM 34 30607 - 30589 - f 81 -3 -5.73672 | opp_overlap 30589, overlap 30581 AAAGAAGTAAAAAAA CGTTCGTA GTT TACGGGCG TTTTTCTTTGTTTTT TERM 35 30589 - 30607 + F 100 -7.4 -5.63012 | opp_overlap 30589 30581 AAAGAAGTAAAAAAA CGTTCGTA GTT TACGGGCG TTTTTCTTTGTTTTT SSU98_0029 30715 - 31422 + | phosphoribosylaminoimidazole-succinocarboxamide synthase SSU98_0030 31426 - 35154 + | phosphoribosylformylglycinamidine synthase domain-containing protein SSU98_0031 35157 - 36611 + | amidophosphoribosyltransferase TERM 36 36706 - 36681 - g 91 -6.7 -5.4182 | overlap 36682 AATGACAAATAAAAA TGCCTACGCCC AATC GGGCGTTGACG TCGAAGCGGGATATG TERM 37 36705 - 36682 - g 86 -10.2 -3.82652 | overlap 36681 ATGACAAATAAAAAT GCCTACGCCC AATC GGGCGTTGAC GTCGAAGCGGGATAT SSU98_0032 36652 - 37689 + | phosphoribosylaminoimidazole synthetase purN 37686 - 38237 + | phosphoribosylglycinamide formyltransferase TERM 38 38914 - 38897 - g 71 -7 -4.11216 | opp_overlap 38897 GCGTTACGGTGAAAA TCCGCA GCAAAA TGCGGA TTTCTACCAAAATGC purH 38247 - 39794 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 39 39809 - 39825 + F 100 -8 -5.4505 | AGAGTTTTGGATTTA GCTCAC TTCGT GTGAGC TTTTTTATTCCCGAA SSU98_0035 39920 - 41182 + | phosphoribosylamine--glycine ligase TERM 40 41327 - 41313 - g 75 -5.6 -4.72007 | GCCTATGAAAAGAAA GTGGTC TCT GCCCAC CGCACCCCAGACCTC SSU98_0036 41208 - 41696 + | phosphoribosylcarboxyaminoimidazole (NCAIR) mutase SSU98_0037 41683 - 42756 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 41 43549 - 43530 - g 89 -3.6 -5.66229 | gap 1, overlap 43532 43533 ATTAATAATAAAAAA CA-CCAAGG ATA CCTTGACTG ACAGCTCTATTAAAA TERM 42 43546 - 43532 - g 74 -6.4 -4.45127 | overlap 43530 43533 TAATAATAAAAAACA CCAAGG ATA CCTTGA CTGACAGCTCTATTA SSU98_0038 42766 - 43569 + | hypothetical protein TERM 43 44108 - 44092 - g 72 -9.5 -3.2115 | opp_overlap 44095, overlap 44095 CAAATCAGTTATGAA GAATCAG TTT CTGATTC TCAAGTAATTTTAAT SSU98_0039 43642 - 44868 + | hypothetical protein SSU98_0040 44870 - 46162 + | adenylosuccinate lyase TERM 44 46200 - 46168 - f 84 -3.5 -5.67063 | opp_overlap 46174, overlap 46169 46174 TGGATTATAAAAAAA TCAAAATTCTTTGGA TTT TCCAGAGAATTTTTT TGTTTACTTGCGAAT TERM 45 46199 - 46169 - f 71 -7 -3.99153 | opp_overlap 46174, overlap 46168 46174 GGATTATAAAAAAAT CAAAATTCTTTGGA TTT TCCAGAGAATTTTT TTGTTTACTTGCGAA TERM 46 46174 - 46194 + F 100 -9.1 -6.01187 | opp_overlap 46169 46168 46174 ATAAAAAAATCAAAA TTCTTTGGA TTT TCCAGAGAA TTTTTTTGTTTACTT TERM 47 46194 - 46174 - f 85 -6.9 -4.96276 | opp_overlap 46174, overlap 46169 46168 ATAAAAAAATCAAAA TTCTTTGGA TTT TCCAGAGAA TTTTTTTGTTTACTT TERM 48 46601 - 46579 - g 100 -9.4 -5.45726 | opp_overlap 46583 CACACTTGAAAAAAA TAAATCATTT TCA AAATGATTTA CGAATAAACAAGTGT SSU98_0041 46569 - 46733 + | hypothetical protein TERM 49 47046 - 47017 - f 76 -6.6 -4.40963 | overlap 47018 ACTTTGTAAAAAGAA CTTGATAGCTAA TTTGAT TTAGCTATCAAT AAGATGGGAATTTGT TERM 50 47045 - 47018 - f 77 -10.1 -3.23855 | overlap 47017 CTTTGTAAAAAGAAC TTGATAGCTAA TTTGAT TTAGCTATCAA TAAGATGGGAATTTG SSU98_0042 47078 - 47827 + | amino acid transporter SSU98_0043 48037 - 48414 + | metal-dependent membrane protease SSU98_0044 48375 - 48857 + | hypothetical protein SSU98_0045 48850 - 49722 + | ABC-type multidrug transport system, ATPase component SSU98_0046 49722 - 50504 + | ABC-type sugar transport system, permease component TERM 51 50576 - 50607 + GF 70 -5.8 -4.26871 | overlap 50577 50604 TAGTTCTGAGTGCAC TTGGGGTTGGAATG GGTT TGTTCCTGCCCCAG TTTATTGGTAAATTG SSU98_0047 50425 - 52209 + | ABC-type multidrug transport system, ATPase and permease component SSU98_0048 52311 - 52484 + | hypothetical protein TERM 52 52724 - 52758 + F 100 -13.8 -4.52047 | opp_overlap 52730, overlap 52730 GATTATATAATCTCC TGAGAATACTGGACTC ACT GAGTCTGGTATTTTCA TTTTATGCTATAATG TERM 53 52730 - 52752 + F 100 -9.2 -4.74012 | opp_overlap 52730, overlap 52724 ATAATCTCCTGAGAA TACTGGACTC ACT GAGTCTGGTA TTTTCATTTTATGCT ruvB 52779 - 53780 + | Holliday junction DNA helicase B SSU98_0050 53780 - 54526 + | hypothetical protein SSU98_0051 54528 - 55163 + | phosphatase TERM 54 55183 - 55195 + F 76 -7.7 -4.03234 | GGGTGGCTTGTACAC CAGCT ATA AGCTG TTTCTCTCCAGCGAC TERM 55 55267 - 55282 + F 95 -7.5 -5.31091 | opp_overlap 55267 55266 GATTACTTGACTAAT GCCCG TAACAT CGGGC TTTTGTTTTGTTATG SSU98_0052 55395 - 56207 + | transcriptional regulator SSU98_0053 56176 - 56310 + | hypothetical protein TERM 56 56504 - 56465 - f 75 -5.6 -4.8083 | gap 1 TAATATTATTAAAAA GGGAGCGGG-AAAGACATC CAT GATGGCTCCGCCCTCACCC ACAGAATAATGAAAA TERM 57 56571 - 56520 - f 71 -5.2 -4.60317 | opp_overlap 56526 56530, overlap 56524 56530 ACAGAATAATGAAAA CGAACATAAAGCCCTCACTAGG TGTATAAT CTTAGTGAGGGCTTTGTGGTTA ACGAGTTAATGATGT TERM 58 56567 - 56524 - f 95 -12.6 -3.78229 | opp_overlap 56526 56530, overlap 56520 56530 AATAATGAAAACGAA CATAAAGCCCTCACTAGG TGTATAAT CTTAGTGAGGGCTTTGTG GTTAACGAGTTAATG TERM 59 56526 - 56565 + F 93 -13.8 -2.72379 | opp_overlap 56524 56520 56530, overlap 56530 TAATGAAAACGAACA TAAAGCCCTCACTAGG TGTATAAT CTTAGTGAGGGCTTTG TGGTTAACGAGTTAA TERM 60 56561 - 56530 - f 86 -10.2 -4.3341 | opp_overlap 56526 56530, overlap 56524 56520 GAAAACGAACATAAA GCCCTCACTAGG TGTATAAT CTTAGTGAGGGC TTTGTGGTTAACGAG TERM 61 56530 - 56561 + F 93 -12.4 -4.05446 | opp_overlap 56530 56524 56520, overlap 56526 GAAAACGAACATAAA GCCCTCACTAGG TGTATAAT CTTAGTGAGGGC TTTGTGGTTAACGAG TERM 62 57778 - 57768 - g 75 -5.4 -4.82901 | CGTGGCTCACAAAAA GCAA CCA TTGC ACTTGCGCATCAACT SSU98_0054 56715 - 57878 + | transposase TERM 63 57883 - 57859 - T 91 -6.5 -5.31275 | opp_overlap 57859 TTTTAGCACAAAAAA GACTACTAG GGACGAG CTAGTAGCC TAATATAAAAATTGT TERM 64 58045 - 58066 + T 73 -9.5 -2.90714 | opp_overlap 58043, overlap 58048 AGACATCAATTTATG TGAGCTGAC TGCC GTCAGCTTA TATCTCCCACTTTAA TERM 65 58048 - 58063 + T 75 -9 -3.5947 | opp_overlap 58043, overlap 58045 CATCAATTTATGTGA GCTGAC TGCC GTCAGC TTATATCTCCCACTT TERM 66 58096 - 58084 - T 76 -7.7 -4.13767 | opp_overlap 58084 TCTCCCACTTTAAAA GGTCT CCC AGACC TTTTAAACTCCCACC TERM 67 58084 - 58096 + T 76 -7.7 -4.13767 | opp_overlap 58084 TCTCCCACTTTAAAA GGTCT CCC AGACC TTTTAAACTCCCACC TERM 68 58177 - 58163 - T 74 -10 -2.6914 | overlap 58162 GAGGTTGGAGATAAG GCGAAC TCT GTTCGC ATCAGTCGTAATGGT TERM 69 58315 - 58369 + T 78 -9.5 -3.53012 | opp_overlap 58305 58323, overlap 58323 AAGCATTTAAACAAT TAAAGAAACTATTCCCGTCTGAGCA GTTGA TGACAAGACGGGAATAGTTTTTGTA TTTAGGGCACACAAA TERM 70 58323 - 58361 + T 100 -8.9 -5.19879 | opp_overlap 58323, overlap 58315 AAACAATTAAAGAAA CTATTCCCGTCTGAGCA GTTGA TGACAAGACGGGAATAG TTTTTGTATTTAGGG TERM 71 58361 - 58323 - T 95 -11.1 -4.63748 | opp_overlap 58323 58315 AAACAATTAAAGAAA CTATTCCCGTCTGAGCA GTTGA TGACAAGACGGGAATAG TTTTTGTATTTAGGG SSU98_0055 59354 - 58416 - | transposase TERM 72 58755 - 58787 + g 100 -10 -4.82678 | opp_overlap 58754 TAGGTCACGAAAACT GGTCTCTATGCC CCATCTGTA GGCATAGAGATC TTTTAATTTTTCTGG TERM 73 59394 - 59422 + H 79 -10.4 -3.20901 | opp_overlap 59394, overlap 59398 GTACTATAGAAAAAA CTAACCTACCAC AAAAC GTGATAGGTTAG TTAACTTAATGACAT TERM 74 59422 - 59394 - H 100 -13.3 -5.39721 | opp_overlap 59394 59398 GTACTATAGAAAAAA CTAACCTACCACA AAA CGTGATAGGTTAG TTAACTTAATGACAT TERM 75 59433 - 59457 + H 76 -2 -5.58179 | opp_overlap 59437, overlap 59436 59437 GTTAGTTAACTTAAT GACATTGGGC TTTTT GCCCAGCCTC TTTTTTGTTATACTA SSU98_0056 59488 - 60714 + | folylpolyglutamate synthase SSU98_0057 60739 - 60852 + | hypothetical protein TERM 76 60833 - 60864 + F 78 -5.9 -4.82667 | opp_overlap 60836, overlap 60836 TTGCAAAAATTTCCA GAACTCCCGAT AGGAAATGAC ATCGGGAGTGC TTTTTGATATAATAA SSU98_0058 60905 - 61312 + | Heme/copper-type cytochrome/quinol oxidase, subunit 1 SSU98_0059 61396 - 62427 + | Heme/copper-type cytochrome/quinol oxidase, subunit 1 TERM 77 62425 - 62442 + F 91 -6.3 -5.64421 | opp_overlap 62418 62425, overlap 62418 TATCAAAAGAATGAA TGATTGC TCAG GCAGTCA TTTTTTCTTTAGCCT TERM 78 63706 - 63694 - g 70 -7.7 -3.62096 | GCTGAGGATGTCAAA CCTCT CGA AGAGG ATAGGCAAGAGATTG TERM 79 63808 - 63790 - g 71 -8.2 -3.50853 | TCGGTGGAATCAGAA GATCAGGA GCA TCCTAATC TAAGTGCAAAAGAAT mutL 62542 - 64482 + | DNA mismatch repair protein TERM 80 64998 - 64984 - g 72 -10 -2.76696 | overlap 64983 TCGCCCTTGAAGAAG CCATGG AAG CCATGG AAGCCCTTGGTTACC ruvA 64521 - 65111 + | Holliday junction DNA helicase motor protein TERM 81 65544 - 65572 + F 76 -10.5 -2.68434 | opp_overlap 65541 GTACCTTACTAACTC GCCACAAAAAT AATGTCG ATTTTTGTGGC TCATGTCGTGTCCAG SSU98_0062 65752 - 66405 + | 3-methyladenine DNA glycosylase TERM 82 66975 - 66987 + G 81 -5.5 -5.09426 | GCAGCAACTTTATTC GCGTG TCC TACGC TTTTTTGGAATTGGC SSU98_0063 66406 - 67623 + | nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA TERM 83 68658 - 68640 - g 91 -10.4 -4.09739 | CCAAGGTTCTGAAAA TGCTAAGA AAT TCTTAGCA GATAATCCAGCAATC SSU98_0064 67675 - 68826 + | RecA protein TERM 84 68913 - 68929 + F 100 -8.7 -5.31275 | opp_overlap 68907 68913 68915 TATAAGAACGAAAAA GTCTGGA GAT TCCAGGC TTTTTTCTAATAAAA TERM 85 68929 - 68913 - f 82 -6.5 -5.01845 | opp_overlap 68913, overlap 68907 68915 TATAAGAACGAAAAA GTCTGGA GAT TCCAGGC TTTTTTCTAATAAAA TERM 86 69000 - 68985 - f 70 -3.2 -5.00884 | overlap 68987 AGTTTTTTTAAAAAA TAGGTC TGCA GACCGA GGGAATTTATGATAT spxA 69062 - 69460 + | transcriptional regulator Spx SSU98_0066 69560 - 69826 + | hypothetical protein SSU98_0067 69826 - 70245 + | Holliday junction resolvase-like protein SSU98_0068 70257 - 70577 + | hypothetical protein TERM 87 70600 - 70575 - f 95 -13.5 -3.38072 | opp_overlap 70581, overlap 70581 TTTATGGAAGAGGAA TAAAAAGGTCC GGGT GGACCTTTTTA TCATGAGCATGAAAA TERM 88 70581 - 70594 + F 95 -8.1 -4.91109 | opp_overlap 70581 70575 GAAGAGGAATAAAAA GGTCC GGGT GGACC TTTTTATCATGAGCA TERM 89 70594 - 70581 - f 100 -8.1 -5.19251 | opp_overlap 70581, overlap 70575 GAAGAGGAATAAAAA GGTCC GGGT GGACC TTTTTATCATGAGCA TERM 90 70632 - 70644 + F 100 -9.1 -4.91511 | opp_overlap 70632 AAGAAAGCGAATTAA GGTCC AGT GGACC TTTTTATCATGAGCT TERM 91 70644 - 70632 - f 73 -9.1 -3.44891 | opp_overlap 70632 AAGAAAGCGAATTAA GGTCC AGT GGACC TTTTTATCATGAGCT SSU98_0069 70749 - 71363 + | hypothetical protein TERM 92 71812 - 71833 + F 73 -2.3 -5.30575 | ATAAGTAATGAAGAA TCCTGAAAT AAAA GTTTTGGGA TTTTTTGAATTTTTG TERM 93 71874 - 71857 - f 75 -5.5 -4.7254 | overlap 71859 ATTTTTGAGTAAAAA CTCTTGC AATG GCAAGTG GAATCTGGTAGAATG rpsJ 72026 - 72334 + | 30S ribosomal protein S10 SSU98_0071 72431 - 72769 + | 50S ribosomal protein L3 TERM 94 72999 - 72977 - g 70 -5.7 -4.30995 | gap 1, overlap 72974 72993 TGTTCCAGAAAAGAA CGTTATCCTT ATCA AAGG-TAACG TACCAGGTGCTAAGA SSU98_0072 72822 - 73058 + | ribosomal protein L3 TERM 95 73486 - 73449 - g 100 -9.3 -4.64861 | overlap 73477 GTTGCTGAAAACAAA TTTGTAGCTGTTAACTC ACTT GAATTCACAGCTCCAAA AACTGCTGAATTTGC rplD 73083 - 73706 + | 50S ribosomal protein L4 TERM 96 73746 - 73733 - g 75 -3.1 -5.15634 | overlap 73734 GATGTTATCAAAAAA CCTGT CATC ACAGA AAGCTCAATGGGCCA rplW 73706 - 74005 + | 50S ribosomal protein L23 rplB 74023 - 74856 + | 50S ribosomal protein L2 rpsS 75107 - 75388 + | 30S ribosomal protein S19 TERM 97 75633 - 75616 - g 74 -6.3 -4.56597 | TTTGGTTTGGAAAAA GCTAACT TGGT AGTCAGC GAAGCATTCGCAAAC rplV 75406 - 75750 + | 50S ribosomal protein L22 rpsC 75763 - 76416 + | 30S ribosomal protein S3 rplP 76420 - 76833 + | 50S ribosomal protein L16 SSU98_0080 76843 - 77049 + | 50S ribosomal protein L29 rpsQ 77073 - 77333 + | 30S ribosomal protein S17 rplN 77358 - 77726 + | 50S ribosomal protein L14 TERM 98 77830 - 77801 - f 71 -7.1 -3.84364 | TAGAAAACAAACTAA GTCCCCTGGTTAA ATCA CTAACCAGGGTGC CCATTAGGGCGTAAG rplX 77865 - 78170 + | 50S ribosomal protein L24 TERM 99 78166 - 78150 - f 76 -2.2 -5.55769 | opp_overlap 78150 CGCTACAACAAAAAA TCAGGC GAAGT GCTTGA TTAATCACGAAGGAA TERM 100 78363 - 78343 - g 71 -4.7 -4.66833 | overlap 78344 TTCTAACGCTAAAAA CCTTGAGAA AGC TGCTCAAGA ATTGGCTTTGATCTC rplE 78194 - 78736 + | 50S ribosomal protein L5 TERM 101 78842 - 78829 - f 78 -6.7 -4.57837 | opp_overlap 78828 ACACGCTGTGAAAAA TGTGG ACGT CCACA CTCAGTTTACCGCAA TERM 102 79389 - 79374 - g 76 -2.6 -5.32699 | gap 1, overlap 79375 TCAAACATCAAAAAA GGTATTG CTA CAAT-CC TTAAAAACGAAGGTT rpsH 79272 - 79670 + | 30S ribosomal protein S8 TERM 103 80350 - 80368 + G 71 -8.2 -3.52678 | overlap 80348 80351 CTAGCCGTGCTAACC TCAACAAC ATG GTTGTTGG TGTTTCTGAAGGCTT rplF 80136 - 80672 + | 50S ribosomal protein L6 rplR 80752 - 81117 + | 50S ribosomal protein L18 TERM 104 81375 - 81345 - g 74 -9.8 -3.09061 | overlap 81344 81352 TGCTAAGAAAAACAT GATTGAAGTACCAA TGG TTGGTACAACAATC CCTCACGAAGTTCGC TERM 105 81368 - 81352 - g 72 -9.5 -3.16564 | overlap 81345 81344 AAAAACATGATTGAA GTACCAA TGG TTGGTAC AACAATCCCTCACGA rpsE 81136 - 81630 + | 30S ribosomal protein S5 rpmD 81645 - 81827 + | 50S ribosomal protein L30 TERM 106 81845 - 81868 + F 76 -9.6 -3.46848 | opp_overlap 81839 81837 81845, overlap 81837 TAACAAATAGACTAA GTCGCATAGA GAAA TCTTTGCGAC TTCTAGTCCATTTTA TERM 107 81868 - 81845 - f 76 -9.6 -3.46051 | opp_overlap 81845 81837, overlap 81839 81837 TAACAAATAGACTAA GTCGCATAGA GAAA TCTTTGCGAC TTCTAGTCCATTTTA SSU98_0090 81906 - 82403 + | ribosomal protein L15 SSU98_0091 82417 - 83094 + | preprotein translocase subunit SecY SSU98_0092 83107 - 83727 + | preprotein translocase subunit SecY TERM 108 83730 - 83755 + F 78 -4.1 -5.2853 | gap 1, opp_overlap 83730 83732 83734, overlap 83725 83731 83734 AATTACAGAATAGAA TATA-GGTTGAC CTA GTCAACCTTCTA TTTTGTTTTTAGATA TERM 109 83752 - 83732 - f 72 -8.3 -3.47975 | opp_overlap 83731 83730 83725 83734, overlap 83730 83734 TTACAGAATAGAATA TAGGTTGAC CTA GTCAACCTT CTATTTTGTTTTTAG TERM 110 83750 - 83734 - f 82 -10.9 -3.30171 | opp_overlap 83731 83730 83725 83734, overlap 83732 83730 ACAGAATAGAATATA GGTTGAC CTA GTCAACC TTCTATTTTGTTTTT TERM 111 83734 - 83750 + F 90 -10.9 -4.1922 | opp_overlap 83734 83732 83730, overlap 83731 83730 83725 ACAGAATAGAATATA GGTTGAC CTA GTCAACC TTCTATTTTGTTTTT TERM 112 84046 - 84078 + G 70 -9.3 -2.83012 | opp_overlap 84050 84054, overlap 84054 CGTTTGGTTCAGGAT GACATCAAGGAAAAA GGC TTTTTGCTTGATGGC TATCCTCGTACGATT adk 83821 - 84462 + | adenylate kinase infA 84584 - 84802 + | translation initiation factor IF-1 rpsM 84963 - 85328 + | 30S ribosomal protein S13 TERM 113 85358 - 85346 - g 71 -4.1 -4.88736 | TAGGAGGTAGAAAAA TTGGC TAA ACCAA CACGTAAACGTCGTG SSU98_0096 85346 - 85729 + | 30S ribosomal protein S11 SSU98_0097 85774 - 86712 + | DNA-directed RNA polymerase subunit alpha rplQ 86727 - 87113 + | 50S ribosomal protein L17 TERM 114 87226 - 87274 + T 100 -20.7 -5.50723 | opp_overlap 87241 ATCATGTTGATTGGA CGCTTGTTTACGAAATTACTCTA AGA TAGAATAATTTCGTAAGCAGGCG TTTTTATTTTACTCA TERM 115 87537 - 87516 - T 71 -8.7 -3.25317 | overlap 87514 87512 TGATAAACTAAGATA GTTGTCGCG AGAG CGCGATAAC GACAAGACCTTTGAA TERM 116 88682 - 88695 + T 73 -6.7 -4.1891 | ACATCCCGATGACCG CCCTA GAGA TAGGG TTTCTCTTCGGAGCA TERM 117 89888 - 89909 + T 74 -10.1 -2.58544 | opp_overlap 89889, overlap 89887 ACGGCAGGAGGGCAA ACCGAGGAG TTTA CTCCTCGGG GTTGTAGGACTGCAA TERM 118 89908 - 89889 - T 100 -13.6 -3.62096 | opp_overlap 89888 89887 CGGCAGGAGGGCAAA CCGAGGAG TTTA CTCCTCGG GGTTGTAGGACTGCA TERM 119 89989 - 89999 + T 74 -2.6 -5.28176 | AGAGTAATAGCCTCG TATT TAA AATA TTTTTTATACCTAGC TERM 120 92692 - 92704 + T 78 -10.5 -3.09327 | ACGCCTGAAGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG SSU98_0100 93303 - 93205 - | hypothetical protein TERM 121 93776 - 93807 + r 100 -11.8 -4.95843 | opp_overlap 93781, overlap 93781 GCCGCCGGTATAGTT TAAAAGACAAGGTT TCTA AGCCTTGTCTTTTG TTTTATCTTTTCTAT TERM 122 93781 - 93802 + r 100 -9.5 -5.2894 | opp_overlap 93781, overlap 93776 CGGTATAGTTTAAAA GACAAGGTT TCTA AGCCTTGTC TTTTGTTTTATCTTT TERM 123 93802 - 93781 - R 73 -7.3 -4.16943 | opp_overlap 93781 93776 CGGTATAGTTTAAAA GACAAGGTT TCTA AGCCTTGTC TTTTGTTTTATCTTT SSU98_0101 94813 - 93857 - | hypothetical protein SSU98_0102 94970 - 94818 - | hypothetical protein SSU98_0103 95001 - 94897 - | hypothetical protein SSU98_0104 95188 - 94982 - | hypothetical protein TERM 124 95237 - 95258 + r 100 -10.9 -5.61596 | TAGTTAATTTTTAGA GGCGACTTG TTTT CAAGTCGTC TTTTTTTGTCCCCAT SSU98_0105 96265 - 95249 - | hypothetical protein SSU98_0106 96689 - 96270 - | hypothetical protein TERM 125 96876 - 96899 + r 71 -4.6 -4.86001 | gap 1, overlap 96879 TTTCATGTATGTGTG CACCCCCTATT AGT AAT-GGGGGTA TTTTTCTGACCTCCT TERM 126 96879 - 96897 + r 85 -9.6 -4.05067 | overlap 96876 CATGTATGTGTGCAC CCCCTATT AGT AATGGGGG TATTTTTCTGACCTC SSU98_0107 98221 - 97025 - | hypothetical protein TERM 127 97462 - 97446 - G 85 -2.3 -5.80003 | TCAATAAACAAAAAA TTAGG GGTCATT CCTAA ATCATAGGCATCAGC SSU98_0108 98236 - 98334 + | hypothetical protein TERM 128 98600 - 98620 + T 80 -9.7 -3.51924 | opp_overlap 98600 98595 TTTCATAAAACCAAA GGGGGAG GGGTTAG CTCCCCC TTATATCACTAAGCC TERM 129 98620 - 98600 - T 86 -9.7 -4.26881 | opp_overlap 98600, overlap 98595 TTTCATAAAACCAAA GGGGGAG GGGTTAG CTCCCCC TTATATCACTAAGCC SSU98_0109 98949 - 98629 - | hypothetical protein SSU98_0110 99700 - 99128 - | hypothetical protein TERM 130 99877 - 99856 - H 73 -7.3 -4.16943 | opp_overlap 99856 CGGTATAGTTTAAAA GACAAGGTT TCTA AGCCTTGTC TTTTTGTTTTGAGGT TERM 131 99856 - 99877 + H 100 -9.5 -5.46706 | opp_overlap 99856 CGGTATAGTTTAAAA GACAAGGTT TCTA AGCCTTGTC TTTTTGTTTTGAGGT SSU98_0111 99929 - 100759 + | hypothetical protein SSU98_0112 101658 - 101921 + | transcriptional regulator SSU98_0113 101922 - 102626 + | ABC-type Mn/Zn transport system, ATPase component SSU98_0114 102559 - 103431 + | ABC-type Mn2+/Zn2+ transport system, permease component TERM 132 104877 - 104866 - g 78 -4.4 -5.12068 | overlap 104855 GAGAGCCAAGAAAAA CTCT TGGA AGAG TTGGAAAACTGGCCG SSU98_0115 103441 - 104952 + | ABC-type metal ion transport system, periplasmic component/surface adhesin TERM 133 104965 - 104985 + F 86 -8.3 -4.45068 | opp_overlap 104965 TAAGAATAATGAGAA GACTGGGCA AGG TGTTCAGTC TTTCTTCTTGACAAT TERM 134 105395 - 105380 - g 81 -4 -5.41143 | gap 1 CATTTTCCAAAAAAA GCCTAGA AAA TCT-GGC CAGCAAAATCTCGCA SSU98_0116 105037 - 105525 + | transcriptional regulator TERM 135 105548 - 105536 - f 75 -9.1 -3.62096 | opp_overlap 105536 CTTGATGAGTGTAAA GCTCC TGT GGAGC TTTACAGCCTACTAC TERM 136 105536 - 105548 + F 75 -9.1 -3.56092 | opp_overlap 105536 CTTGATGAGTGTAAA GCTCC TGT GGAGC TTTACAGCCTACTAC TERM 137 105632 - 105660 + G 93 -13.3 -2.65993 | opp_overlap 105640, overlap 105640 TCGCTTTATTTCCAA CCTTCAAAGGTTC CCC GAACCTTTGAAGC TAGTCTGAATCTGAT TERM 138 105652 - 105640 - g 70 -7.7 -3.60792 | opp_overlap 105632 105640 TTTCCAACCTTCAAA GGTTC CCC GAACC TTTGAAGCTAGTCTG TERM 139 105640 - 105652 + G 70 -7.7 -3.5882 | opp_overlap 105640, overlap 105632 TTTCCAACCTTCAAA GGTTC CCC GAACC TTTGAAGCTAGTCTG SSU98_0117 105542 - 105709 + | hypothetical protein SSU98_0118 105706 - 105915 + | copper chaperone TERM 140 105924 - 105939 + T 100 -10.4 -4.95806 | opp_overlap 105924 GGTATAAGCGAAAAA GCAGCC GTCG GGCTGC TTTTTATAATGCTTT TERM 141 105939 - 105924 - T 100 -10.4 -4.78149 | opp_overlap 105924 GGTATAAGCGAAAAA GCAGCC GTCG GGCTGC TTTTTATAATGCTTT SSU98_0119 106356 - 105943 - | diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases TERM 142 106367 - 106348 - G 80 -6.5 -4.84914 | ATTGATAGAACAAAA GGAAATC ATGGTG GATTTCC TTGAAAAATCTTAAT SSU98_0120 107634 - 106378 - | tyrosyl-tRNA synthetase SSU98_0121 107788 - 110211 + | membrane carboxypeptidase (penicillin-binding protein) TERM 143 110291 - 110333 + F 76 -4.2 -5.07275 | opp_overlap 110307, overlap 110293 TCCAAACAAGGCTTG CAGCAGTTAAATCAAACTTT TTC AAAGGAAGATTTAGCTGCTC TTTTTGTGTCTATGA TERM 144 110293 - 110331 + F 70 -6.8 -4.15325 | opp_overlap 110307, overlap 110291 CAAACAAGGCTTGCA GCAGTTAAATCAAACTTT TTC AAAGGAAGATTTAGCTGC TCTTTTTGTGTCTAT TERM 145 114206 - 114161 - g 100 -10.5 -4.60487 | gap 1, opp_overlap 114172 114173, overlap 114162 114164 114165 114173 GATGATCTTGAAAAA GCACGTGCAAAAGCCGCAGCTG ACG CAGCCGCAGCCTTTGCA-GCAG AAGAAGCAGAAGGCA TERM 146 114205 - 114162 - g 100 -14 -3.3581 | gap 1, opp_overlap 114172 114173, overlap 114161 114164 114165 114173 ATGATCTTGAAAAAG CACGTGCAAAAGCCGCAGCTG ACG CAGCCGCAGCCTTTGCA-GCA GAAGAAGCAGAAGGC TERM 147 114203 - 114164 - g 100 -16.6 -3.24422 | gap 1, opp_overlap 114172 114173, overlap 114162 114161 114165 114173 GATCTTGAAAAAGCA CGTGCAAAAGCCGCAGCTG ACG CAGCCGCAGCCTTTGCA-G CAGAAGAAGCAGAAG TERM 148 114203 - 114165 - g 100 -16.8 -2.54171 | opp_overlap 114172 114173, overlap 114164 114162 114161 114173 ATCTTGAAAAAGCAC GTGCAAAAGCCGCAGCTG ACG CAGCCGCAGCCTTTGCAG CAGAAGAAGCAGAAG TERM 149 114195 - 114173 - g 100 -13.4 -4.13304 | opp_overlap 114173 114172, overlap 114164 114165 114162 114161 AAAGCACGTGCAAAA GCCGCAGCTG ACG CAGCCGCAGC CTTTGCAGCAGAAGA rpoB 110657 - 114229 + | DNA-directed RNA polymerase subunit beta TERM 150 114330 - 114317 - f 78 -5.3 -4.99035 | opp_overlap 114317 TGATTTATAGAAAAA TAGCT TACC AGCTA TCCATTCTGCTGATT TERM 151 115275 - 115265 - g 75 -3.2 -5.1417 | opp_overlap 115272 GTACAAAACGAAAAA CGGA TGC TCCA AGAAGCTGTGGATGC SSU98_0123 114347 - 118054 + | DNA-directed RNA polymerase subunit beta' TERM 152 118065 - 118089 + F 100 -10.8 -4.87626 | opp_overlap 118060, overlap 118060 118058 AATAAATTAAGATGG CACATCTCTC TCTTT GAGGGATGTG TTTTTGATATTCGGA SSU98_0124 118180 - 118569 + | hypothetical protein TERM 153 118602 - 118575 - T 95 -8.5 -4.96523 | opp_overlap 118577, overlap 118577 AAATGAATAATAAAA GAGGATTGACC TTTGCG GGTCAATCCTT TTTAGCTGAATCTGA TERM 154 118600 - 118577 - T 89 -11.1 -4.07486 | opp_overlap 118577, overlap 118575 ATGAATAATAAAAGA GGATTGACC TTTGCG GGTCAATCC TTTTTAGCTGAATCT TERM 155 118577 - 118600 + T 95 -11.8 -4.67755 | opp_overlap 118577 118575 ATGAATAATAAAAGA GGATTGACCT TTGC GGGTCAATCC TTTTTAGCTGAATCT SSU98_0125 118840 - 118604 - | hypothetical protein SSU98_0126 119559 - 118930 - | hypothetical protein SSU98_0127 119633 - 120583 + | Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB SSU98_0128 120567 - 120983 + | Type II secretory pathway, component PulF TERM 156 121091 - 121104 + G 76 -6.7 -4.57073 | AGGTCTTTTCCTGCT TGGCA GCTC TGCCA TTTTTCGGAAAACTC SSU98_0129 120961 - 121533 + | Type II secretory pathway, component PulF SSU98_0130 121535 - 121816 + | competence protein ComGC SSU98_0131 121797 - 122204 + | Type II secretory pathway, pseudopilin PulG SSU98_0132 122176 - 122469 + | Type II secretory pathway, pseudopilin PulG TERM 157 122781 - 122746 - g 91 -8.4 -4.64861 | gap 1, opp_overlap 122754, overlap 122772 TTTTCGGAAAACAAA TGATAGAGGCCAGGGTT ACC AACCCATG-CTCTATCA GGTGGATAGCGCAGC SSU98_0133 122456 - 122890 + | competence protein ComGF SSU98_0134 122868 - 123278 + | hypothetical protein TERM 158 123270 - 123293 + F 83 -7.4 -4.7254 | GGGCTATCATCAGAA GGAGGGTGAG TTGA CTCGTTCTCC TTTTTAGTGCAAAGT SSU98_0135 123335 - 124288 + | adenine-specific DNA methylase SSU98_0136 124338 - 124943 + | putative acetate kinase SSU98_0137 124940 - 125524 + | acetate kinase TERM 159 125559 - 125531 - f 81 -4.5 -5.38549 | opp_overlap 125535, overlap 125535 TTGAAATAAGAAAAA CTAACTGGTAGTC GGA GACTGCCAGTTTC TCTTATAGTTTATAC TERM 160 125535 - 125555 + F 93 -11.9 -4.31815 | opp_overlap 125531 125535 AATAAGAAAAACTAA CTGGTAGTC GGA GACTGCCAG TTTCTCTTATAGTTT TERM 161 125555 - 125535 - f 85 -9.7 -3.97836 | opp_overlap 125535, overlap 125531 AATAAGAAAAACTAA CTGGTAGTC GGA GACTGCCAG TTTCTCTTATAGTTT TERM 162 125569 - 125590 + F 78 -6.7 -4.58395 | overlap 125570 AGTTTCTCTTATAGT TTATACCTT TAGA AAGGTATAG TTTTTAGCAAGTGGA TERM 163 125808 - 125832 + G 85 -5.7 -5.24129 | opp_overlap 125809, overlap 125789 125809 TCGAATACACACGAC AGCTCCATTTT TTG AAAAAGGAGCA TTTTTTATGGAAAAG TERM 164 125831 - 125809 - g 71 -9.2 -2.92255 | opp_overlap 125789 125808 125809 CGAATACACACGACA GCTCCATTTT TTG AAAAAGGAGC ATTTTTTATGGAAAA TERM 165 125809 - 125831 + G 78 -9.2 -3.73995 | opp_overlap 125809, overlap 125789 125808 CGAATACACACGACA GCTCCATTTT TTG AAAAAGGAGC ATTTTTTATGGAAAA SSU98_0138 125647 - 126390 + | hypothetical protein TERM 166 126402 - 126424 + F 75 -9.2 -3.1733 | opp_overlap 126402 126406, overlap 126400 126399 ATAAAACAGTATCAA GCAACAGG TCATCCC CCTGTTGC TACTTTTGTAGAGAG TERM 167 126424 - 126402 - f 76 -9.2 -3.3341 | opp_overlap 126402 126400 126399, overlap 126406 ATAAAACAGTATCAA GCAACAGG TCATCCC CCTGTTGC TACTTTTGTAGAGAG SSU98_0139 126446 - 127702 + | putative folylpolyglutamate synthetase TERM 168 127698 - 127754 + T 78 -9.7 -3.43756 | opp_overlap 127711 127713, overlap 127706 127711 TTTTAGAAGAACTTG TATAGAAAAAAAAGGCTTTGCCGGG CATTCAA CCCAGCAAAGTCTTTTGTTTTAATA ATTTTTAATCAAATC TERM 169 127706 - 127746 + T 90 -9.1 -4.45077 | opp_overlap 127711 127713, overlap 127698 127711 GAACTTGTATAGAAA AAAAAGGCTTTGCCGGG CATTCAA CCCAGCAAAGTCTTTTG TTTTAATAATTTTTA TERM 170 127741 - 127711 - T 100 -9.7 -6.02914 | opp_overlap 127706 127698 127711, overlap 127713 TGTATAGAAAAAAAA GGCTTTGCCGGGC ATTCA ACCCAGCAAAGTC TTTTGTTTTAATAAT TERM 171 127711 - 127741 + T 100 -9 -5.14626 | opp_overlap 127711 127713, overlap 127706 127698 TGTATAGAAAAAAAA GGCTTTGCCGGG CATTCAA CCCAGCAAAGTC TTTTGTTTTAATAAT TERM 172 127739 - 127713 - T 79 -10.9 -3.10446 | opp_overlap 127711 127706 127698, overlap 127711 TATAGAAAAAAAAGG CTTTGCCGGGC ATTCA ACCCAGCAAAG TCTTTTGTTTTAATA SSU98_0140 128810 - 127749 - | cellulase M-like protein TERM 173 129285 - 129299 + H 76 -10 -2.9914 | overlap 129281 ACCATTACCTTTGTT GCGAAC ATT GTTCGC TCTATCTCCAACCTC TERM 174 129361 - 129378 + H 76 -7.7 -4.18018 | opp_overlap 129361 TGGGTGAGACTGAAA CGGTCTG GGAA TAGACCG TTTTAGCTCAACAAC TERM 175 129472 - 129449 - H 100 -8.2 -5.07652 | gap 1, opp_overlap 129449 129450, overlap 129450 CGCTCCAAAAGAAAA CCCTCAACGCT GGT AACGTTG-GGG CATTTTGATTGCCAA TERM 176 129472 - 129450 - H 72 -8.4 -3.63868 | opp_overlap 129449 129450, overlap 129449 GCTCCAAAAGAAAAC CCTCAACGCT GGT AACGTTGGGG CATTTTGATTGCCAA SSU98_0141 129547 - 129912 + | hypothetical protein SSU98_0142 129909 - 130229 + | Thiol-disulfide isomerase and thioredoxin TERM 177 130248 - 130234 - f 76 -10 -3.06418 | opp_overlap 130232, overlap 130231 TGGGTAGATAAATTA GCAGAG AAG CTCTGC CATTTCCCAAAAGAA SSU98_0143 130274 - 131230 + | hypothetical protein SSU98_0144 131249 - 131872 + | EMAP domain-containing protein TERM 178 131905 - 131878 - Tf 75 -5.6 -4.8543 | opp_overlap 131881, overlap 131881 GAAGGGGTAGAAAAA GAAGAATTGGTC AGGT GGCCAATTCTTT TATGCTGGTTCAATT TERM 179 131881 - 131902 + TF 91 -9.5 -4.51097 | opp_overlap 131878 131881 GGGGTAGAAAAAGAA GAATTGGTC AGGT GGCCAATTC TTTTATGCTGGTTCA TERM 180 131902 - 131881 - Tf 79 -7.3 -4.52873 | opp_overlap 131881, overlap 131878 GGGGTAGAAAAAGAA GAATTGGTC AGGT GGCCAATTC TTTTATGCTGGTTCA SSU98_0146 132684 - 131905 - | hypothetical protein SSU98_0145 131974 - 132087 + | hypothetical protein SSU98_0147 132739 - 133134 + | single-strand DNA-binding protein TERM 181 133224 - 133241 + T 84 -7.7 -4.71382 | opp_overlap 133224 ATATCTCCTTAAAAA CACCGAC GAAA GTTGGTG TTTTTGGCTACTTAT TERM 182 133241 - 133224 - T 73 -5.5 -4.57837 | opp_overlap 133224 ATATCTCCTTAAAAA CACCGAC GAAA GTTGGTG TTTTTGGCTACTTAT SSU98_0148 133498 - 133253 - | hypothetical protein SSU98_0149 133669 - 133839 + | Co-chaperonin GroES (HSP10) SSU98_0150 133836 - 133976 + | Co-chaperonin GroES (HSP10) SSU98_0151 133987 - 134643 + | putative chaperonin GroEL SSU98_0152 134640 - 135608 + | GroEL TERM 183 135624 - 135641 + F 100 -7.7 -5.7946 | opp_overlap 135622 135624 GAAATAGCAAAATGA CACAGCT ACTT GGCTGTG TTTTTTTCTTGAAAA TERM 184 135994 - 135939 - g 71 -3.2 -5.04987 | opp_overlap 135951, overlap 135951 AACAGCCGTAAAAAA GTTCAAACAAACGTTTCATCACCACA AAAA CGCGGTGTTGCAACTCGTGTCGGAAC AATGACACCTAAAAA rpsL 135840 - 136253 + | 30S ribosomal protein S12 TERM 185 136299 - 136288 - g 70 -7.2 -3.81256 | AGTCGTAAAAATCAA GCGC CTAA GCGC GAAGTATTGCCAGAT SSU98_0154 136270 - 136740 + | 30S ribosomal protein S7 TERM 186 137237 - 137215 - f 80 -10.5 -3.30203 | opp_overlap 137215 TTAGTAAGAACTTAA GCGGGTGGG ATTTG CCCACTCGC TTTTCTTAAAATATG TERM 187 137215 - 137237 + F 100 -12.7 -4.66987 | opp_overlap 137215 TTAGTAAGAACTTAA GCGGGTGGG ATTTG CCCACTCGC TTTTCTTAAAATATG SSU98_0155 137297 - 139378 + | elongation factor G TERM 188 139390 - 139409 + TF 100 -12.2 -5.52384 | ATAATTGTCTATCTA CACCTACC TTCG GGTAGGTG TTTTTTTGGTACGAC TERM 189 139592 - 139606 + TF 80 -8.6 -3.94 | overlap 139589 TGCTTCGACGAGCGA GGAAAC TTC GTTTCC TTATTTCCAACTTCA TERM 190 139671 - 139687 + TF 71 -7.3 -3.91716 | GTACTTTACAGAAGT GATTTGC GAG GCAAGTC TTATTTCCAACCTAG TERM 191 139721 - 139702 - Tf 82 -12.2 -2.53263 | opp_overlap 139705, overlap 139705 CTTATTTCCAACCTA GAACAGCC TTTA GGCTGTTC TAGCAACTTGCAGCT TERM 192 139718 - 139705 - Tf 70 -8.1 -3.42056 | opp_overlap 139705, overlap 139702 ATTTCCAACCTAGAA CAGCC TTTA GGCTG TTCTAGCAACTTGCA TERM 193 139705 - 139718 + TF 70 -8.1 -3.31322 | opp_overlap 139705 139702 ATTTCCAACCTAGAA CAGCC TTTA GGCTG TTCTAGCAACTTGCA SSU98_0157 140434 - 140339 - | hypothetical protein TERM 194 140400 - 140413 + gF 70 -8.1 -3.3422 | overlap 140399 TTTTCATTAGTAGCA GTCGC CTGT GCGAC ATTTTTGACAGCCTG TERM 195 140956 - 140946 - gH 75 -3.2 -5.18355 | TTGAAAAATCAAAAA GCCT TTA AAGC CTATCTGCAGGAAGT TERM 196 141377 - 141347 - gH 73 -9.6 -2.89255 | overlap 141342 141344 AAAAGCGAAATACGA CGGCGTAGCAACCG GTG CGGTAGATACTCCG AGTCAGAAAGAAGTT SSU98_0156 140418 - 142358 + | metalloendopeptidase TERM 197 142370 - 142402 + FH 100 -14.9 -4.65895 | opp_overlap 142363 142370 GTAAAAGATTATAGA GGTGTCTGCGGTCCA AAA TGGGCGGTAGACACC TTTTTAGGTAAAAAA TERM 198 142402 - 142370 - fH 78 -10.5 -3.05807 | opp_overlap 142370, overlap 142363 GTAAAAGATTATAGA GGTGTCTGCGGTCCA AAA TGGGCGGTAGACACC TTTTTAGGTAAAAAA SSU98_0158 142629 - 143735 + | glyceraldehyde-3-phosphate dehydrogenase TERM 199 143767 - 143754 - f 70 -8.1 -3.38281 | opp_overlap 143749 143748 143754, overlap 143750 143749 TTAGTGAAAATCGAA GAGGC TTCG GCCTC TTTTTTGTTTTGATT TERM 200 143754 - 143767 + F 100 -8.1 -5.85244 | opp_overlap 143750 143749 143754, overlap 143749 143748 TTAGTGAAAATCGAA GAGGC TTCG GCCTC TTTTTTGTTTTGATT SSU98_0159 143842 - 143949 + | hypothetical protein pgk 143991 - 145190 + | phosphoglycerate kinase TERM 201 145341 - 145299 - f 78 -10.1 -3.45027 | gap 1, opp_overlap 145312, overlap 145306 145312 ACTGCGTATGAAAGA TGAACGATGAAAAGAGTTGG GAGA CCAACTCTTTTC-TAGTACA AAGGCTAGATTTTCT TERM 202 145335 - 145306 - f 84 -12.3 -2.87822 | opp_overlap 145312, overlap 145299 145312 ATGAAAGATGAACGA TGAAAAGAGTTGG GAGA CCAACTCTTTTCT AGTACAAAGGCTAGA TERM 203 145312 - 145329 + F 91 -9.9 -4.46212 | opp_overlap 145306 145299 145312 GATGAACGATGAAAA GAGTTGG GAGA CCAACTC TTTTCTAGTACAAAG TERM 204 145329 - 145312 - f 91 -9.9 -4.36411 | opp_overlap 145312, overlap 145306 145299 GATGAACGATGAAAA GAGTTGG GAGA CCAACTC TTTTCTAGTACAAAG TERM 205 145402 - 145421 + F 100 -12.2 -4.42653 | opp_overlap 145402 AGGTAAAGGCTAAAA TGCAACGG ATTT CCGTTGCA TTTTGTGCATCGCGT TERM 206 145421 - 145402 - f 93 -12.2 -4.24404 | opp_overlap 145402 AGGTAAAGGCTAAAA TGCAACGG ATTT CCGTTGCA TTTTGTGCATCGCGT TERM 207 145733 - 145707 - f 77 -11 -2.57132 | opp_overlap 145713, overlap 145706 145713 TTTCTTGGTGACAAC TTCAAATAGTCC ACT GGGCTATTTGAA CCCCGCAAGGCTGAA TERM 208 145823 - 145803 - f 77 -2.5 -5.59564 | opp_overlap 145803 145801 ATAAATGTAAAAAAA GACGTTG TTTTTTG CAGCGTC TATTTGTTTGTCTTA SSU98_0161 145997 - 146512 + | hypothetical protein TERM 209 146532 - 146510 - f 89 -10.8 -3.96148 | opp_overlap 146508 CGTTTTCAGGATAAA TGATGTTATA AAA TATAACATCA CCTATTGACCTCAAA TERM 210 146911 - 146923 + G 76 -7.7 -4.15833 | opp_overlap 146910 ACATGATGAATTCAG TCGTC AGG GACGA TTTTCAAGTCCTAGT SSU98_0162 146537 - 146959 + | transcriptional regulator SSU98_0163 146988 - 148334 + | glutamine synthetase TERM 211 148359 - 148336 - T 100 -15.4 -3.78022 | opp_overlap 148340, overlap 148340 TGGATATGTATTAAA CAAAGGACCC CGAC GGGTCCTTTG TTCACGAGCCGAGAA TERM 212 148355 - 148340 - T 95 -10.4 -4.50627 | opp_overlap 148340, overlap 148336 TATGTATTAAACAAA GGACCC CGAC GGGTCC TTTGTTCACGAGCCG TERM 213 148340 - 148355 + T 89 -10.4 -4.15044 | opp_overlap 148340 148336 TATGTATTAAACAAA GGACCC CGAC GGGTCC TTTGTTCACGAGCCG TERM 214 148546 - 148524 - T 100 -16.4 -4.88163 | opp_overlap 148524 TTAATATAAAATAAA TCCCAGAGGT TTC ACCTCTGGGA TTTTAGTGTGTTATC TERM 215 148524 - 148546 + T 100 -16.4 -4.44819 | opp_overlap 148524 TTAATATAAAATAAA TCCCAGAGGT TTC ACCTCTGGGA TTTTAGTGTGTTATC SSU98_0164 150236 - 148557 - | metallo-beta-lactamase superfamily hydrolase SSU98_0165 150503 - 150240 - | hypothetical protein SSU98_0166 150695 - 150597 - | hypothetical protein TERM 216 150877 - 150867 - H 72 -4 -5.06451 | CATTATTTGAAAAAA TATC CAA GATA GCTTACAATAGAGAG TERM 217 151186 - 151207 + G 81 -5.1 -5.14563 | opp_overlap 151186 AGAAAAATCATAGTA TCAGCCTCA TGCC TGTGGTTGA TTTTTTGGTAGCGCA SSU98_0167 151077 - 151760 + | putative molecular chaperone SSU98_0168 151757 - 152197 + | acetyltransferase SSU98_0169 152184 - 153194 + | O-sialoglycoprotein endopeptidase TERM 218 153203 - 153229 + T 95 -11 -4.59993 | opp_overlap 153203 TTTATAGAATAAAAA CCTCTTACGT CAAGGAT ACGTAAGAGG TTTATTTGTGGATTT TERM 219 153229 - 153203 - T 100 -11 -5.24796 | opp_overlap 153203 TTTATAGAATAAAAA CCTCTTACGT CAAGGAT ACGTAAGAGG TTTATTTGTGGATTT SSU98_0170 154079 - 153231 - | transcriptional regulator TERM 220 154179 - 154158 - g 82 -2.3 -5.59502 | opp_overlap 154174, overlap 154168 154169 154173 GAAAAAATTAAAAAA TATCCCAAA ATCA TATGGAATA TGTCAAATATTCCTA TERM 221 155507 - 155491 - g 71 -4.4 -4.83615 | overlap 155503 TATCTTGGAGAAAAA GCAACT GAAGA AGCTGC CAAAGAAACAGCTGA SSU98_0171 154129 - 155556 + | ABC-type sugar transport system, periplasmic component TERM 222 155560 - 155595 + F 93 -11.9 -3.65046 | overlap 155563 ACTGAAAAATAGGTA GGAGGTCTTGGGAAG TTGATT CTTCCCCGGACCTTC TTATTAAAATGAAGA TERM 223 155563 - 155592 + F 85 -10 -3.96068 | overlap 155560 GAAAAATAGGTAGGA GGTCTTGGGAAG TTGATT CTTCCCCGGACC TTCTTATTAAAATGA SSU98_0172 155604 - 156518 + | ABC-type sugar transport system, permease component SSU98_0173 156529 - 157359 + | ABC-type sugar transport system, permease component SSU98_0174 157369 - 159570 + | Alpha-galactosidase TERM 224 159583 - 159607 + GF 100 -12.9 -4.37092 | TAGCATCCCTATTCC TAGGCCCAGCT ATC GGCTGGGTCTA TTTTATGCAGAAAGT SSU98_0175 159540 - 159632 + | hypothetical protein SSU98_0176 159845 - 160546 + | putative integral membrane protein; branched-chain amino acid permease SSU98_0177 160530 - 160856 + | hypothetical protein SSU98_0178 160866 - 161888 + | hypothetical protein TERM 225 162155 - 162119 - f 89 -6 -5.41746 | AATTTTTCAAAAAAA CCTCAAAAATAACAGA TTTTT TCTTGTATCTTTGAGG CATAAGGAGTATAAT TERM 226 162741 - 162753 + G 71 -4.1 -4.79223 | GATAATAAGATTTAT CGTGT TGT ATACG TTTTTGGTAATGTAG TERM 227 162815 - 162803 - g 80 -6.3 -4.89521 | opp_overlap 162803 AGATGGTAAACAAAA TGTTG CTC CAACA TTTAACAGAAATGAT SSU98_0179 162351 - 164882 + | extracellular protein TERM 228 165115 - 165104 - g 72 -7.2 -4.0162 | opp_overlap 165104 TCGGCAGAGGACAAA GGCG TAGG CGCC ATCGCCAAAGACATT SSU98_0180 164987 - 165451 + | Epf-like protein SSU98_0181 165485 - 166045 + | RTX family exoprotein A gene TERM 229 166201 - 166180 - T 91 -11.7 -4.1466 | opp_overlap 166180 ATCGAACCCCCAAAA TCCAAAGTC ATTC GACTTTGGA TTTTTTTGATACGAC TERM 230 166180 - 166201 + T 100 -11.7 -5.52384 | opp_overlap 166180 ATCGAACCCCCAAAA TCCAAAGTC ATTC GACTTTGGA TTTTTTTGATACGAC TERM 231 166229 - 166269 + T 75 -9.2 -3.2032 | gap 1, opp_overlap 166238, overlap 166238 GACATGCTCGTCATA CCTAAAAAACAGCCTTCTC TTGC GAGA-GGCTGTTTTTCATG CTTTTAATCTAAAAG TERM 232 166260 - 166238 - T 100 -8.5 -5.1287 | gap 1, opp_overlap 166238 166229 GTCATACCTAAAAAA CAGCCTTCTC TTGC GAGA-GGCTG TTTTTCATGCTTTTA TERM 233 166238 - 166260 + T 95 -8.5 -4.86773 | gap 1, opp_overlap 166238, overlap 166229 GTCATACCTAAAAAA CAGCCTTCTC TTGC GAGA-GGCTG TTTTTCATGCTTTTA SSU98_0182 167887 - 166265 - | hypothetical protein TERM 234 167272 - 167240 - G 78 -4.1 -5.18409 | TAAAACAAAAACAAA CGCGATCCATAGC CAAGCAT GCCACGAATTGCG ACGGGAAAAGATACG SSU98_0183 168601 - 167897 - | ABC-type multidrug transport system, ATPase component TERM 235 168681 - 168645 - R 100 -10.4 -5.60689 | opp_overlap 168653, overlap 168653 TCATACAATAAAAAA CAAAAAAATTCAAGCA GTTTT TGCTTGAATTTTTCAG TCATTAAATAATTAG TERM 236 168673 - 168653 - R 100 -8.4 -6.28401 | opp_overlap 168653, overlap 168645 TAAAAAACAAAAAAA TTCAAGCA GTTTT TGCTTGAA TTTTTCAGTCATTAA TERM 237 168653 - 168673 + r 90 -9.1 -4.7078 | opp_overlap 168653 168645 TAAAAAACAAAAAAA TTCAAGCAG TTT TTGCTTGAA TTTTTCAGTCATTAA TERM 238 168760 - 168732 - R 95 -14.7 -2.66912 | opp_overlap 168740, overlap 168740 ATCGAACTCAGACTA GCTCCAAAGGTTC GGG GAACCTTTGGAGG TTGGAGATAAGGCGA TERM 239 168786 - 168772 - R 74 -10 -2.6914 | overlap 168771 GAGGTTGGAGATAAG GCGAAC AAA GTTCGC TACAAAAAGGTTCGG TERM 240 168807 - 168795 - R 88 -7.7 -4.83169 | opp_overlap 168795 AGTTCGCTACAAAAA GGTTC GGG GAACC TTTGGAGGTTGGAGA TERM 241 168897 - 168909 + r 75 -9.1 -3.62096 | opp_overlap 168897 GTAGCAGGCTGTAAA GCTCC ACT GGAGC TTTACACTCATCAAA TERM 242 168909 - 168897 - R 75 -9.1 -3.56092 | opp_overlap 168897 GTAGCAGGCTGTAAA GCTCC ACT GGAGC TTTACACTCATCAAA SSU98_0184 169358 - 168951 - | flavoprotein TERM 243 169264 - 169254 - G 73 -5.4 -4.65895 | opp_overlap 169257, overlap 169255 GTTTTCAGCGAAAAA GTCT GCT AGAC GGTCTGGCATGAGTT TERM 244 169371 - 169385 + r 74 -8.5 -3.76952 | opp_overlap 169363, overlap 169363 CAATACATCGGGGAA GGCGG TTTCC CCGCC TTTGACTTAACTGGA TERM 245 169492 - 169514 + r 74 -8.4 -3.78934 | GGTCAGGGTGACGTC GGTCCAGGGA AAT TCCTTGGAGC TTGTTATGGGGGAAG SSU98_0185 170134 - 169847 - | flavoprotein TERM 246 170250 - 170263 + H 75 -5.3 -4.82901 | opp_overlap 170244 170250 GGGAGTATACTTAAA CTAAG GGAA CTTAG TTTTTATCAGGAGCC SSU98_0186 170372 - 171772 + | Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase TERM 247 172071 - 172049 - g 71 -3.4 -4.9725 | overlap 172052 ATTTGTAGATAAAAA TGACAAGGGT GTG ACCGTTGTAA ATCGTGCTGGCTTGA SSU98_0187 171843 - 172436 + | hypothetical protein TERM 248 172458 - 172434 - f 100 -14.5 -3.55444 | opp_overlap 172440, overlap 172440 CGTTTATTTGGGAAA TAAAAAGGTCC GGG GGACCTTTTTA TCATGAGCTTGAAAA TERM 249 172440 - 172452 + F 100 -9.1 -4.91511 | opp_overlap 172434 172440 TTTGGGAAATAAAAA GGTCC GGG GGACC TTTTTATCATGAGCT TERM 250 172452 - 172440 - f 100 -9.1 -5.27335 | opp_overlap 172440, overlap 172434 TTTGGGAAATAAAAA GGTCC GGG GGACC TTTTTATCATGAGCT TERM 251 172570 - 172587 + F 100 -8.5 -5.38497 | opp_overlap 172570, overlap 172562 TATGTGATATAAAAA GATTGGT GGGA ACCAATC TTTTTTAGTTTAAGT TERM 252 172587 - 172570 - f 95 -8.5 -4.9792 | opp_overlap 172570 172562 TATGTGATATAAAAA GATTGGT GGGA ACCAATC TTTTTTAGTTTAAGT SSU98_0188 172704 - 174746 + | transcriptional antiterminator SSU98_0189 174748 - 175053 + | phosphotransferase system, galactitol-specific IIB component TERM 253 175255 - 175270 + G 78 -9 -3.75933 | AGCGAATATTATTGT TGGCTC GCTT GAGCCA TTTGGTCAAATGTAT SSU98_0190 175214 - 175354 + | hypothetical protein SSU98_0191 175387 - 176433 + | hypothetical protein TERM 254 176571 - 176604 + F 100 -19.9 -3.28712 | opp_overlap 176577, overlap 176577 TGGCTGCTCTATATG GAGAAATTCTGGACA TTCG TGTCCAGAATTTCTC TTCTAAGGAGCGGGA TERM 255 176577 - 176598 + F 91 -11.7 -4.27117 | opp_overlap 176577, overlap 176571 CTCTATATGGAGAAA TTCTGGACA TTCG TGTCCAGAA TTTCTCTTCTAAGGA TERM 256 176598 - 176577 - f 91 -11.7 -3.95073 | opp_overlap 176577 176571 CTCTATATGGAGAAA TTCTGGACA TTCG TGTCCAGAA TTTCTCTTCTAAGGA TERM 257 178286 - 178308 + F 89 -6.3 -5.42131 | opp_overlap 178286 ATCAAATGTAAGAAA TCAAGCTCC ACTTA GGAACTTGA TTTTTTCTATACTTC TERM 258 178308 - 178286 - f 81 -8.5 -4.29929 | opp_overlap 178286 ATCAAATGTAAGAAA TCAAGCTCC ACTTA GGAACTTGA TTTTTTCTATACTTC TERM 259 178556 - 178578 + F 84 -9.9 -3.74251 | GGCATGCCTACCTTT CACCGACGA ATTTG TTGTCGGTG TTTGCTGAAAATCTG SSU98_0194 178567 - 180156 + | glycerophosphoryl diester phosphodiesterase TERM 260 180192 - 180162 - T 81 -6.9 -4.67607 | gap 2, opp_overlap 180164, overlap 180164 TTTTGAATAAACAAA GAGACGCGA--GGGC CTG GCCCAATCGCGTCTT TTCTGTCTTAAAAAG TERM 261 180190 - 180164 - T 83 -9.5 -3.94772 | gap 2, opp_overlap 180164, overlap 180162 TTGAATAAACAAAGA GACGCGA--GGGC CTG GCCCAATCGCGTC TTTTCTGTCTTAAAA TERM 262 180164 - 180190 + T 91 -9.5 -4.67943 | gap 2, opp_overlap 180164 180162 TTGAATAAACAAAGA GACGCGA--GGGC CTG GCCCAATCGCGTC TTTTCTGTCTTAAAA TERM 263 180217 - 180207 - T 73 -5.4 -4.56597 | TTTCTGTCTTAAAAA GGTA ATT TACC TGCAAAGGCACCTAG SSU98_0195 180499 - 180200 - | hypothetical protein TERM 264 180746 - 180733 - H 91 -6.7 -5.31072 | ATAATATAAGAAAAA CTGGT TATA ACCAG AAATCACGGAGGAGG SSU98_0196 180766 - 181935 + | phosphosugar isomerase TERM 265 183027 - 182987 - g 73 -5.3 -4.61162 | overlap 182980 182988 AGACGAAAGAAGAAA CTCCAACTCCAGTACCGGA CAC TCCGGCACCGAAAGAGGAC GAAGTTCCGGCACCA TERM 266 183026 - 182988 - g 71 -8.8 -3.35071 | overlap 182980 182987 GACGAAAGAAGAAAC TCCAACTCCAGTACCGGA CAC TCCGGCACCGAAAGAGGA CGAAGTTCCGGCACC SSU98_0197 182065 - 183750 + | hypothetical protein TERM 267 183770 - 183795 + T 100 -16.1 -4.59773 | opp_overlap 183770 TTATGAAATAATAAA GAGGCAGGGCG GAAA CGCCCAGCCTC TTTTTAGAACTGAAA TERM 268 183795 - 183770 - T 100 -16.1 -4.60258 | opp_overlap 183770 TTATGAAATAATAAA GAGGCAGGGCG GAAA CGCCCAGCCTC TTTTTAGAACTGAAA SSU98_0198 186294 - 184027 - | x-prolyl-dipeptidyl aminopeptidase TERM 269 184332 - 184377 + g 90 -4.1 -5.67283 | gap 1, overlap 184333 CATGGTAACGACCGT TGTCTAGACTCAAT-CTTGC TTTAGGC GCAGGGATTGGGGCTAGGCG TTTTTTATTTCCCTT TERM 270 185128 - 185146 + g 91 -10.2 -4.12188 | overlap 185129 GCCTGGATAGCCACC AGGGCTGG TCA CCAGCCCG TTTTCACGGTAGTAG TERM 271 185129 - 185145 + g 100 -13.7 -3.06991 | overlap 185128 CCTGGATAGCCACCA GGGCTGG TCA CCAGCCC GTTTTCACGGTAGTA SSU98_0199 186464 - 187210 + | methyl-accepting chemotaxis protein TERM 272 187267 - 187277 + F 84 -3.2 -5.67967 | overlap 187240 GGAGTATATCCTGGT GTCA GTC TGGC TTTTTTTCTGATGGT TERM 273 188022 - 188037 + G 78 -5.4 -4.9792 | overlap 188024 ATGTATAACCGTCCC TTGCAG AAAG CTGCGA TTTTTCTCTCGAATC SSU98_0200 187350 - 188153 + | Beta-lactamase class C and other penicillin binding proteins TERM 274 188299 - 188313 + T 80 -8.6 -3.94 | overlap 188281 188296 TACTTCGACGATCGA GGAAAC ATC GTTTCC TTATTTCCAACTTCA TERM 275 188519 - 188548 + T 76 -10.1 -3.03554 | opp_overlap 188524, overlap 188524 GATTTTTCGACATAG TAAAAGGACCTGC ATGT GCAAGTCCTTTTG TGTCTGCTTGATTAA TERM 276 188543 - 188524 - T 91 -10 -4.39166 | opp_overlap 188519 188524 TTCGACATAGTAAAA GGACCTGC ATGT GCAAGTCC TTTTGTGTCTGCTTG TERM 277 188524 - 188543 + T 84 -7.8 -4.64591 | opp_overlap 188524, overlap 188519 TTCGACATAGTAAAA GGACCTGC ATGT GCAAGTCC TTTTGTGTCTGCTTG SSU98_0201 190905 - 188560 - | pyruvate-formate lyase SSU98_0202 191221 - 192288 + | DNA polymerase IV SSU98_0203 192331 - 192750 + | transcriptional regulator TERM 278 192969 - 192959 - f 70 -5.4 -4.42062 | overlap 192960 TACGTTGTAAATAAA GTTG TTA CAAC AAAACAAGTGAGGTA SSU98_0204 192990 - 193616 + | putative NADH-flavin reductase TERM 279 193636 - 193658 + F 81 -2.7 -5.77571 | opp_overlap 193636 TTAAATGGTCTAAAA GATAGCTCC ATCGA GGAATTATC TTTTTATTTTTTACT SSU98_0205 193718 - 194638 + | fructose-1-phosphate kinase-like protein SSU98_0206 194641 - 195324 + | hypothetical protein SSU98_0207 195423 - 195325 - | hypothetical protein SSU98_0208 195820 - 195617 - | transcriptional regulator/sugar kinase SSU98_0209 196805 - 195795 - | transcriptional regulator/sugar kinase TERM 280 195938 - 195958 + gH 70 -3.4 -4.91109 | gap 1 CATCTAATGTAATAT CTTCTGGTT TTTC AACCA-AAG TTTTTATGATAGAAC SSU98_0210 196953 - 198326 + | phosphotransferase system cellobiose-specific component IIC SSU98_0211 198307 - 200217 + | hypothetical protein TERM 281 200266 - 200237 - f 100 -11.6 -5.252 | opp_overlap 200264 GAGTTGTAGAAAAAA GCCAATTCACAA TTTATT TTGCGAATTGGC TTGAAGTCTAATATA TERM 282 200360 - 200350 - f 85 -2.6 -5.84381 | overlap 200342 TTATGAATAAAAAAA TTTT TTT AAAA TCAGCGATTATTTTG SSU98_0212 200720 - 202882 + | ABC-type xylose transport system, periplasmic component SSU98_0213 202943 - 204052 + | ABC-type xylose transport system, periplasmic component TERM 283 204569 - 204585 + G 71 -9.5 -3.01712 | opp_overlap 204567 204564 204578 GATGGGATAATTATT TCTACTG AAT CAGTAGA TATTACCGAGGAAAC SSU98_0214 204071 - 204832 + | hypothetical protein TERM 284 204857 - 204877 + F 72 -8.5 -3.54459 | opp_overlap 204861 ATTGACAATCTAGAG TTAACAAAA ATT TTTTGTTAA TTTAAAAGGAATTGG SSU98_0215 205049 - 205813 + | putative ABC-transport protein, membrane component SSU98_0216 205798 - 206580 + | ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component TERM 285 207430 - 207417 - g 71 -6.7 -4.15508 | AAGGAAGTTTCAAAA TGGGT TGCT ACCCA AATCGGTTCAGATAT SSU98_0217 206619 - 207650 + | ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component SSU98_0218 207744 - 208553 + | 6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase TERM 286 208615 - 208632 + F 100 -8.5 -5.52384 | opp_overlap 208615 TGATCAGATACCTAA TGAGAGA GGAT TCTCTCA TTTTTTTAATCAAAA TERM 287 209175 - 209163 - gf 88 -7.7 -4.7373 | opp_overlap 209163 209161 GCATTTTATCAAAAA GGGTT TAA AACCC TGTTTGCCGGTCATC SSU98_0219 209034 - 209786 + | cation transport ATPase SSU98_0220 209654 - 209842 + | cation transport ATPase TERM 288 210515 - 210492 - g 81 -4.4 -5.35354 | GAGATAATGAAAAAA CTGCCCAGGC TATT GCCAAGGAAG TCGGCATTGAGCAGG SSU98_0221 209843 - 210805 + | cation transport ATPase SSU98_0222 213411 - 210844 - | exonuclease V subunit alpha TERM 289 212401 - 212413 + g 71 -3.3 -5.0538 | overlap 212402 GTCTGCGCGTGGGAA GGGCT TGA AGCCG TTTTTTCCCATCAGG TERM 290 213467 - 213413 - R 100 -17.4 -3.57144 | opp_overlap 213433, overlap 213415 213433 CCCCTCACTTCCAAA TATGCAGGTTCGGGCTAAAATAGTCC ACT GGACTATTTTACTCCCAACCCGCACA GCTCCAACAGTCCAG TERM 291 213465 - 213415 - R 100 -17.8 -3.36515 | opp_overlap 213433, overlap 213413 213433 CCTCACTTCCAAATA TGCAGGTTCGGGCTAAAATAGTCC ACT GGACTATTTTACTCCCAACCCGCA CAGCTCCAACAGTCC TERM 292 213433 - 213447 + r 83 -8.6 -4.25104 | opp_overlap 213415 213413 213433 AGGTTCGGGCTAAAA TAGTCC ACT GGACTA TTTTACTCCCAACCC TERM 293 213447 - 213433 - R 81 -8.6 -4.07687 | opp_overlap 213433, overlap 213415 213413 AGGTTCGGGCTAAAA TAGTCC ACT GGACTA TTTTACTCCCAACCC SSU98_0223 214204 - 213578 - | Signal peptidase I SSU98_0224 215122 - 214214 - | ribonuclease HIII TERM 294 214710 - 214731 + g 84 -3.7 -5.44721 | AAGAGAGGGGCGATT TGGCAGATT TTTT GGTCTGTCA TTTTTTTGGAATCAT TERM 295 215049 - 215065 + g 73 -5.1 -4.72272 | overlap 215052 CGATAGCGGTCATAG TGAGCCA TCA TGGCTTG TTTTTGCTGGGCAGA TERM 296 215052 - 215062 + g 76 -6.8 -4.47707 | overlap 215049 TAGCGGTCATAGTGA GCCA TCA TGGC TTGTTTTTGCTGGGC SSU98_0225 215177 - 216172 + | dehydrogenase and related proteins TERM 297 216199 - 216244 + F 95 -7.1 -5.33848 | gap 1 ATCCGAAAATAGAAA TGAGAGTGAGTTAGTAG-CCAA TTG TTGGATTACTGCCTTACTCTTA TTTTTTACTTATAGT TERM 298 216615 - 216595 - g 82 -8.4 -4.33997 | opp_overlap 216594 216598, overlap 216592 CATGAAAAACAATAA GAAGATGT TATAC ACATCTTC ATTGGCTCTTTCCCT SSU98_0226 216521 - 217552 + | LysM repeat-containing protein TERM 299 217560 - 217597 + T 81 -8.6 -4.15632 | opp_overlap 217564, overlap 217564 217567 TTAATTAGACTTACA AAAATAACCGTTTCAG CCTTAT CTGAAACGGTTATTGC TTTATATGTAGTAAT TERM 300 217593 - 217564 - T 100 -13.8 -4.89852 | opp_overlap 217560 217564 217567 TTAGACTTACAAAAA TAACCGTTTCAG CCTTAT CTGAAACGGTTA TTGCTTTATATGTAG TERM 301 217564 - 217593 + T 100 -13.8 -3.67481 | opp_overlap 217564, overlap 217560 217567 TTAGACTTACAAAAA TAACCGTTTCAG CCTTAT CTGAAACGGTTA TTGCTTTATATGTAG TERM 302 217567 - 217590 + T 89 -11.1 -3.95007 | opp_overlap 217564, overlap 217564 217560 GACTTACAAAAATAA CCGTTTCAG CCTTAT CTGAAACGG TTATTGCTTTATATG TERM 303 217663 - 217682 + T 82 -12.2 -2.53263 | opp_overlap 217666 217668 217669, overlap 217666 AGGTGCAGGTAGCTA GAACAGCC TAGA GGCTGTTC TAGGTTGGAAATAAG TERM 304 217666 - 217679 + T 70 -8.1 -3.42056 | opp_overlap 217666 217668 217669, overlap 217663 TGCAGGTAGCTAGAA CAGCC TAGA GGCTG TTCTAGGTTGGAAAT TERM 305 217679 - 217666 - T 70 -8.1 -3.36878 | opp_overlap 217666 217663, overlap 217668 217669 TGCAGGTAGCTAGAA CAGCC TAGA GGCTG TTCTAGGTTGGAAAT TERM 306 217713 - 217697 - T 71 -7.3 -3.91716 | opp_overlap 217696 217699 CTAGGTTGGAAATAA GACTTGC GAA ACAAGTC ACTTTCGTAGAGTAC TERM 307 217813 - 217782 - T 90 -11.1 -4.35644 | opp_overlap 217786 217789, overlap 217786 ATGACTATAAAAGAA GAAACAACTATCT CCCCCC AGATAGCTGTTTC GTGCGCAAATTACAG TERM 308 217809 - 217786 - T 78 -6.1 -4.72617 | opp_overlap 217786 217789, overlap 217782 CTATAAAAGAAGAAA CAACTATCT CCCCCC AGATAGCTG TTTCGTGCGCAAATT SSU98_0227 219591 - 217966 - | glycosidase SSU98_0228 221666 - 219672 - | phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific TERM 309 221744 - 221765 + H 100 -8.9 -4.76193 | opp_overlap 221748, overlap 221748 AGCATGTCCTTTTTT GAAATTTGT ACGG ACAAATTTC TTTTGTGTTATCATT TERM 310 221748 - 221761 + H 72 -3.9 -4.89519 | opp_overlap 221748, overlap 221744 TGTCCTTTTTTGAAA TTTGT ACGG ACAAA TTTCTTTTGTGTTAT TERM 311 221962 - 221945 - g 74 -6.3 -4.53077 | TTAAAAGAAAAAATA CGGACAA ATGT TTATCCG GCAGAAAGCTCCCTA SSU98_0229 221897 - 222613 + | transcriptional regulator SSU98_0230 222671 - 222982 + | hypothetical protein SSU98_0231 222979 - 223527 + | hypothetical protein TERM 312 223522 - 223541 + F 100 -8.6 -4.95806 | opp_overlap 223522 TTGAGTAATATAGCA GGGTAAGG GAGG CCTTATCC TTTTTATCGTCATTT SSU98_0232 223678 - 226014 + | mismatch repair ATPase SSU98_0233 226038 - 226691 + | acetyltransferase TERM 313 226712 - 226678 - f 93 -13.2 -3.05463 | opp_overlap 226687 226708, overlap 226687 ATGTGGTGGATTTAA CAGAAAAAAGTTGAAA CAT TTTCAACTTTTTTCTT TTTGTAAATGAATCT TERM 314 226687 - 226703 + F 100 -8.1 -5.98675 | opp_overlap 226678 226687 ATTTAACAGAAAAAA GTTGAAA CAT TTTCAAC TTTTTTCTTTTTGTA TERM 315 226703 - 226687 - f 100 -8.1 -5.48063 | opp_overlap 226687, overlap 226678 ATTTAACAGAAAAAA GTTGAAA CAT TTTCAAC TTTTTTCTTTTTGTA SSU98_0234 226898 - 227212 + | Thiol-disulfide isomerase and thioredoxin TERM 316 227225 - 227248 + F 100 -7.5 -5.67063 | opp_overlap 227225 TAATTGAAAATGAAA GCAAGTGGT GGATCG ACTACTTGC TTTTTTTATAATCAG TERM 317 227961 - 227947 - g 71 -5 -4.63218 | opp_overlap 227947 TGCTTTTGAAGAAAA TCTCCT GCC AGAAGA TGTCATTCAATACAT SSU98_0235 227402 - 229009 + | Acyl-coenzyme A synthetases/AMP-(fatty) acid ligase TERM 318 229033 - 229003 - f 95 -5.4 -6.01187 | AATGAAAGAAAAAAA TCTGTAAGAGTGAC GAA ACCACGCTTGCAGA TAAGAAGGAGTTCAC TERM 319 229496 - 229486 - g 71 -2.4 -5.08601 | TTATTTGAAGAAAAA TCCC CAA GGGT ACTGCCATATCGATC TERM 320 229953 - 229966 + G 70 -3.8 -4.83759 | opp_overlap 229953 AGGAAATGGAAGAAG CAGG ATATGG CCTG TTTTTGGATTTGCTT SSU98_0236 229049 - 229987 + | peptide methionine sulfoxide reductase TERM 321 229997 - 230033 + F 84 -11.8 -3.12005 | opp_overlap 229997 230005, overlap 230005 AAATAAATTTATGAA CGCAGAAAGTCTATTC GCAAA GAATAGGCTTTTTGTG TATTAAAATTGTATG TERM 322 230005 - 230025 + F 83 -6.2 -5.10064 | opp_overlap 229997 230005, overlap 229997 TTATGAACGCAGAAA GTCTATTC GCAAA GAATAGGC TTTTTGTGTATTAAA TERM 323 230250 - 230234 - g 73 -5.1 -4.62336 | overlap 230235 AGTCGAGTTGAAAAA TTAGGAG TTG CTCCTAC ATCGGATATATTATT SSU98_0237 230105 - 230626 + | transcriptional regulator PlcR, putative SSU98_0238 230604 - 230984 + | TPR repeat-containing protein TERM 324 231123 - 231144 + F 100 -11.6 -4.84359 | opp_overlap 231122 GGGTTCTAATGATAG GGAGGTGG TGGAGT CCACCTCC TTTTTGTGCAAATGG TERM 325 231984 - 231999 + G 78 -5.4 -4.98616 | opp_overlap 231981, overlap 231986 231996 CTAATTAAGGGAGCT TTGCCT CTCA AGGCGA TTTTTGCTATTTTAC SSU98_0239 231150 - 232979 + | hypothetical protein SSU98_0240 232961 - 233152 + | hypothetical protein SSU98_0241 233083 - 233175 + | hypothetical protein SSU98_0242 233172 - 234974 + | hypothetical protein SSU98_0243 234943 - 235158 + | hypothetical protein SSU98_0244 235160 - 235792 + | peptide ABC transporter ATPase TERM 326 236146 - 236166 + F 100 -10.5 -5.61881 | TTCACGTTGATTCTA GAGGTTGAA GTG TTCAGCCTC TTTTTGTTTTTCCGG SSU98_0245 236217 - 237551 + | Na+/alanine symporter TERM 327 237559 - 237576 + F 100 -6.9 -5.4593 | opp_overlap 237554 237559 237561, overlap 237561 AGAAATAAGATAAAA GTCAGCC ACTT GGCTGTC TTTTTGTTCTTTTAG TERM 328 237576 - 237559 - f 83 -6.9 -4.86029 | opp_overlap 237559 237561, overlap 237554 237561 AGAAATAAGATAAAA GTCAGCC ACTT GGCTGTC TTTTTGTTCTTTTAG TERM 329 237561 - 237574 + F 81 -8.1 -4.32946 | opp_overlap 237559 237554 237561, overlap 237559 AAATAAGATAAAAGT CAGCC ACTT GGCTG TCTTTTTGTTCTTTT SSU98_0246 237616 - 238464 + | small-conductance mechanosensitive channel SSU98_0247 238615 - 239064 + | ATPase TERM 330 239233 - 239266 + T 89 -6.1 -5.25772 | opp_overlap 239233 239235, overlap 239234 239235 TCTTTTAATGAAAAA TACCCCCAAAATT AGCACGTC AATTTTGGGGGCG TTTTTATTATAGTTT TERM 331 239266 - 239233 - T 80 -6.8 -4.8622 | opp_overlap 239233 239234 239235, overlap 239235 TCTTTTAATGAAAAA TACCCCCAAAATTA GCACGT CAATTTTGGGGGCG TTTTTATTATAGTTT TERM 332 239235 - 239264 + T 79 -10.9 -2.82187 | opp_overlap 239235 239233, overlap 239234 239233 TTTTAATGAAAAATA CCCCCAAAATT AGCACGTC AATTTTGGGGG CGTTTTTATTATAGT TERM 333 239264 - 239235 - T 91 -11.6 -4.05402 | opp_overlap 239234 239233 239235, overlap 239233 TTTTAATGAAAAATA CCCCCAAAATTA GCACGT CAATTTTGGGGG CGTTTTTATTATAGT SSU98_0248 240646 - 239300 - | glutamate dehydrogenase TERM 334 240674 - 240694 + H 79 -8.5 -4.11235 | opp_overlap 240679, overlap 240679 TTTCTTTTTTATTTA TTAAATTGT CTG ACAATTTAA TTTATCTGATAATTA SSU98_0249 240847 - 241806 + | dihydroorotate dehydrogenase 1A SSU98_0250 242139 - 243371 + | hypothetical protein SSU98_0251 243365 - 244210 + | HAD superfamily hydrolase TERM 335 244254 - 244225 - T 77 -2.8 -5.43414 | opp_overlap 244223 244225 AGTATATAGAAAAAA GCTAGTGCTCTC AATCCA GAGAATGCTAGC TCTTTTAATTTCCAA SSU98_0252 245095 - 244259 - | ABC-type uncharacterized transport system, permease component SSU98_0253 245861 - 245043 - | ABC-type uncharacterized transport system, permease component TERM 336 245382 - 245370 - GR 76 -7.7 -4.07975 | TAATTGAACGATAAA CATCC CTA GGATG GAGCTGACTAGAAAG SSU98_0254 246798 - 245815 - | ABC-type uncharacterized transport system, ATPase component TERM 337 246000 - 246024 + gr 100 -8.7 -4.96848 | TAAATTCCCAGCCCT CCAATTGCAAA TCT TTTTCAATTGG TTTTTCTGTGGAGAA SSU98_0255 247416 - 246883 - | transcriptional regulator TERM 338 247457 - 247435 - H 79 -10.8 -3.01712 | opp_overlap 247433 247430 TTCTCCTTTTGAACA TTTTTAGACA CAG TGTCTAAAAA CAGTTCTTCTGACTT SSU98_0256 247497 - 250001 + | hypothetical protein TERM 339 250039 - 250005 - T 89 -10.9 -4.04071 | opp_overlap 250010, overlap 250010 AAAGATGAATAAGAA TAAAACCAACTGCTC CATGT GAACAGTTGGTTTTT GGTTGATGTGGTTAT TERM 340 250034 - 250010 - T 100 -10.8 -5.00467 | opp_overlap 250010, overlap 250005 TGAATAAGAATAAAA CCAACTGCTC CATGT GAACAGTTGG TTTTTGGTTGATGTG TERM 341 250010 - 250034 + T 100 -8.6 -4.91873 | opp_overlap 250010 250005 TGAATAAGAATAAAA CCAACTGCTC CATGT GAACAGTTGG TTTTTGGTTGATGTG SSU98_0257 251109 - 250051 - | hypothetical protein TERM 342 250267 - 250293 + g 78 -2.2 -5.56673 | overlap 250268 ATCATTCCCATCTTC ATAGTAGTAACC TTG GGCTTCTACTAA TTTTTTCTTGTCGAT SSU98_0258 251861 - 251106 - | hypothetical protein SSU98_0259 252174 - 251848 - | transcriptional regulator SSU98_0260 252486 - 252866 + | putative effector of murein hydrolase LrgA SSU98_0261 252841 - 253554 + | putative effector of murein hydrolase TERM 343 253582 - 253559 - Tf 100 -11.8 -5.55769 | opp_overlap 253559 TCTTACAATAAAAAA CTACGATTGG AATT CCAACCGTAG TTTTTTAGTCTACAT TERM 344 253559 - 253582 + TF 100 -9.6 -5.22312 | opp_overlap 253559 TCTTACAATAAAAAA CTACGATTGG AATT CCAACCGTAG TTTTTTAGTCTACAT SSU98_0263 254387 - 253587 - | formate/nitrate transporter TERM 345 254510 - 254498 - gH 95 -4.9 -5.75342 | GTTGTCCAAAAAAAA TTCAA CTT TTGAA AGGAAATATAAGAAA TERM 346 255105 - 255085 - gH 74 -6.1 -4.4648 | AGGGCTATGATAAAA CAGTCGCTG AGA CAATGACTG CTCCATATACTTCAG SSU98_0262 254373 - 255374 + | hypothetical protein TERM 347 255384 - 255397 + FH 88 -5.2 -5.71295 | opp_overlap 255384 CTATAATATAGAGAA CCCG TTTCGT CGGG TTTTTCTTTTTCTCT SSU98_0264 255503 - 256636 + | hypothetical protein TERM 348 256918 - 256907 - gf 75 -2.2 -5.28826 | AAACTGCACAAAAAA CTAG TCAG CCAG CCAGTCGCAAAACAG SSU98_0265 256441 - 257037 + | hypothetical protein SSU98_0266 257230 - 257760 + | NTP pyrophosphohydrolase including oxidative damage repair enzymes TERM 349 257748 - 257772 + F 81 -7.3 -4.56597 | opp_overlap 257748 257752 GGAAATAGTGAAAAG TAATCTATCGT GAA ATGATAGGTTA TTTTTGGGAGGAAAA TERM 350 258583 - 258600 + G 70 -3.5 -4.89477 | ATGGTCTTTTAATGT TAAACAT GGGG GTGTTTA TTTTATTCTTCCAAA SSU98_0267 258008 - 260104 + | translation initiation factor 2 GTPase TERM 351 260146 - 260197 + F 77 -9.7 -3.24423 | gap 1, opp_overlap 260153, overlap 260153 TCCCTCTTCTAAGTT CATAAAAGACTCCAGATCATCGCT GTAGA AGCCTTGGTTTGGAGTCTTTT-TG TTAAATATTCTTAGA TERM 352 260153 - 260191 + F 100 -8.9 -5.12971 | opp_overlap 260153, overlap 260146 TCTAAGTTCATAAAA GACTCCAGATCATCGCT GTAGA AGCCTTGGTTTGGAGTC TTTTTGTTAAATATT TERM 353 260701 - 260690 - g 70 -5.8 -4.26881 | overlap 260685 GCTCAGAAAATCAAA CTGC GACC GCAG TCGATGGAATTTCAC TERM 354 260786 - 260776 - g 81 -5.4 -5.18726 | GCTCCAGAAGAAAAA CTAG TTT CTAG CGATTCTACGAGAGA TERM 355 261004 - 260993 - g 79 -3 -5.38047 | overlap 260995 TATCTATAGAAAAAA TATC GGCA GATA ATGACGAAATTAAGT SSU98_0268 260539 - 261258 + | methyl-accepting chemotaxis protein SSU98_0269 261388 - 262578 + | methyl-accepting chemotaxis protein TERM 356 262683 - 262723 + F 100 -12.1 -4.78237 | opp_overlap 262676 TCCAAAATCTGAACT GCACCCCAAAAGTTAGA GGTGAAA TCTAATTTTTGAGGTGC TTTTCTTGTAAGGTC SSU98_0270 262821 - 262955 + | hypothetical protein TERM 357 263033 - 263008 - T 100 -6.9 -5.95449 | opp_overlap 263008 AAACAAAAGAAAAAA GCCTTTGAAAC GTTG ATTTCATAGGC TTTCTGTATGTTGTC rpmG 263198 - 263049 - | 50S ribosomal protein L33 rpmF 263396 - 263214 - | 50S ribosomal protein L32 TERM 358 263494 - 263519 + H 85 -4.1 -5.63857 | opp_overlap 263485 263502, overlap 263496 GTATAACAAAAGTTT TTTGTAAAGTA AAGT TACTTGACAGA TTTTTTTCACTTTTT TERM 359 264652 - 264629 - g 75 -8.9 -3.66908 | opp_overlap 264626, overlap 264625 GTCCTTGAAAAGCAA GGCATCGAG CTCCCT CTCGATACC CAGTTAGATGTTTAC hisS 263672 - 264955 + | histidyl-tRNA synthetase TERM 360 264946 - 264969 + T 84 -4.6 -5.45802 | TTTAGAAGAATTGGA GAAGCAGT AGTCTAAA GCTGCTTC TTTTTATTTTAGAAA TERM 361 265014 - 264993 - T 100 -8.1 -5.42514 | TTAGAAAGCAAAAAA GAAGCGATT GGAT AATCACTTC TTGAAAATAGTGGAG SSU98_0274 266061 - 265036 - | alcohol dehydrogenase SSU98_0275 266514 - 269165 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 362 269339 - 269363 + F 91 -11.5 -3.93583 | opp_overlap 269335 GAGTAGTAAATCGTA TCCTACTCAGT TGA ACGGAGTAGGA TTTATAGGTAAATTG TERM 363 269424 - 269397 - f 76 -10 -3.11218 | opp_overlap 269397, overlap 269400 CCAAATATCGTAAGA CAATCCTCTATT GAAA AATAGGGGATTG TTTGTTTAGAAATAA TERM 364 269397 - 269424 + F 100 -12.2 -4.42806 | opp_overlap 269397 269400 CCAAATATCGTAAGA CAATCCTCTATT GAAA AATAGGGGATTG TTTGTTTAGAAATAA SSU98_0276 269567 - 270472 + | threonine synthase TERM 365 270640 - 270608 - g 79 -6.9 -4.58663 | ATGACGCTGCAAAAA CAGCTGAGCTGATGG AAG CCTTGAACACAGCTG GTCAGTATGACATTC SSU98_0277 270520 - 271062 + | threonine synthase TERM 366 271081 - 271105 + F 100 -10.1 -5.3658 | opp_overlap 271085 CGATTTATTTTATGA CAAACTGCTCA TTT TGAACAGTTTG TTTTCTTTTTGTGGT TERM 367 271101 - 271085 - f 71 -7.3 -3.9712 | opp_overlap 271081 TTATTTTATGACAAA CTGCTCA TTT TGAACAG TTTGTTTTCTTTTTG TERM 368 271259 - 271233 - gf 85 -2.2 -5.8901 | overlap 271235 AGAGAAAAGAAAAAA GCCCTCTTGAAG CGG CTCAAAGAACGC ATCAAACCCAAGATG SSU98_0278 271151 - 271351 + | hypothetical protein TERM 369 272141 - 272151 + GF 71 -2.4 -5.09521 | opp_overlap 272134, overlap 272134 GATGAATACCAAGAT GGCG GAT CGCA TTTTTGGTTTCTTGG SSU98_0279 271320 - 272951 + | ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease component SSU98_0280 272869 - 274605 + | ABC-type multidrug transport system, ATPase and permease component TERM 370 274623 - 274603 - f 72 -4.1 -5.01811 | overlap 274585 TTATTAAAGGAAAAA TAATTGAAA AAT TTACAATTA AAAAATCTGATGGTA SSU98_0281 274996 - 275199 + | hypothetical protein TERM 371 275658 - 275672 + GF 85 -5.7 -5.1963 | opp_overlap 275658 GTGGTTTGTAAGCCA CTCCA GTACA TGGAG TTTTTCTTGGTTCCC SSU98_0282 275196 - 275855 + | ABC-type cobalt transport system, permease component CbiQ and related transporters TERM 372 276614 - 276625 + GF 70 -5.8 -4.2704 | CGGGCAATAGCGGAG CTGG CAGA CCAG TTTGTTAATGATAAA TERM 373 276777 - 276765 - gf 73 -5.5 -4.56775 | opp_overlap 276765 ATGGTTCTGGAAAAA CAAGC CTT GCTCG TTATCTGGTCGGTTT SSU98_0283 275789 - 277246 + | ABC-type cobalt transport system, ATPase component TERM 374 277409 - 277423 + G 95 -7.8 -5.08601 | CTAATAATATTTTAG CCGTCT ATC AGGCGG TTTTTATTGCCCTAG TERM 375 277648 - 277661 + G 73 -3.8 -5.03715 | TATTTGATATTGGTT GGTG GGGGAG CACC TTTTTTGGGACTCAT SSU98_0284 277246 - 278529 + | Na+-driven multidrug efflux pump TERM 376 278630 - 278659 + F 80 -11.5 -2.57621 | opp_overlap 278623 278635 278638, overlap 278639 TCATATAATCTCCTA GAGAACAGTCGGC CGCG GTCGGCTGTTTTC GTGTGTTCTATTCTT TERM 377 278639 - 278654 + F 86 -8.2 -4.44819 | opp_overlap 278635 278638, overlap 278630 CTCCTAGAGAACAGT CGGCCG CGGT CGGCTG TTTTCGTGTGTTCTA TERM 378 279140 - 279128 - g 71 -3.4 -5.00884 | AGTCTTCGGAAAAAA TTGC TCACG GCAA TCCCTCGGGTATTGA SSU98_0285 278701 - 279654 + | mevalonate kinase TERM 379 279870 - 279854 - gf 100 -6.7 -5.69262 | opp_overlap 279854 TTACAAAAAGAAAAA GAAATTT TAA AAATTTC TCGATTTTTGGATTT SSU98_0286 279647 - 280672 + | mevalonate pyrophosphate decarboxylase SSU98_0287 280614 - 281753 + | mevalonate kinase SSU98_0288 281764 - 282861 + | isopentenyl pyrophosphate isomerase TERM 380 282913 - 282936 + T 86 -8.2 -4.46926 | gap 1, opp_overlap 282913 TAGAAAAATAAAAAA GCCAGG-TCCA TTT TGGAACTTGGC TTTTGTCATGGAGTG TERM 381 282936 - 282913 - T 100 -6 -5.98675 | gap 1, opp_overlap 282913 TAGAAAAATAAAAAA GCC-AGGTCCA TTT TGGAACTTGGC TTTTGTCATGGAGTG SSU98_0289 284707 - 282956 - | ABC-type multidrug transport system, ATPase and permease component SSU98_0290 286358 - 284694 - | hypothetical protein TERM 382 284787 - 284797 + g 75 -5.4 -4.74706 | TTCTTGGTGACGACC TCGT TCT ACGA TTTTTCCATCTTCAA TERM 383 286578 - 286554 - H 71 -4.3 -4.79756 | overlap 286557 TATATAACTTAAAAA TTAGGCTAC TCTAGCC GTAGCCAAA TAGAAGAAACAGTTG TERM 384 286617 - 286640 + H 78 -9 -3.77209 | opp_overlap 286617 AACACGTACGATACA GGTAGAAATC AAAA GATTTTTACC TTTGACTGTCTATTT SSU98_0291 286804 - 286959 + | ACT domain-containing protein TERM 385 287363 - 287343 - g 71 -4.7 -4.73388 | opp_overlap 287343, overlap 287345 AAGGGCTACCAAAAA GGTGATGAA ATC CTCATCAAC TCTATTCCGCAGGCA SSU98_0292 286971 - 288308 + | hypothetical protein TERM 386 288319 - 288339 + F 100 -9 -5.58179 | opp_overlap 288317 ACTAAAAAACGTAGA CCGATTGC CACAA GCAGTCGG TTTTTTGTTATACTA SSU98_0293 288384 - 289079 + | putative phosphoglycerate mutase TERM 387 289089 - 289106 + F 100 -6.3 -6.09888 | opp_overlap 289089 289080 AAATAAGATATAAAA TCAGGGA GGAT TCTCTGA TTTTTTTTCTTGACA TERM 388 289151 - 289177 + F 100 -9.6 -5.69068 | TCCTCAGACTGATTT TTAGCACTCT AAGCAAA AGAGTGCTAA TTTTTTGTCTTTTTC TERM 389 289263 - 289237 - f 84 -11 -3.47322 | opp_overlap 289233, overlap 289255 TGGGAGTATAAGTAA TTAGCACTCGAT ATC ATAGAGTGCTAA CGCTCTTCAAAAATC hrcA 289377 - 290432 + | heat-inducible transcription repressor TERM 390 290773 - 290761 - g 76 -7.7 -4.17132 | AAATGGTTCAAGAAA GCTTG ATT CAAGC CCTTAAAGAAGAAGG SSU98_0295 290445 - 290957 + | molecular chaperone GrpE (heat shock protein) SSU98_0296 291054 - 292877 + | molecular chaperone DnaK TERM 391 293080 - 293102 + F 91 -9.9 -4.67353 | opp_overlap 293072 293080 293082 TAAAGATTCCAATCA CAGAGGTTG CAACC CAGCCTCTG TTTTTGGGTAAATAC SSU98_0297 293224 - 293322 + | hypothetical protein SSU98_0298 293297 - 294445 + | DnaJ-like molecular chaperone TERM 392 294475 - 294459 - f 73 -9.4 -2.92293 | overlap 294454 AATTCTAAGATGAGA CTGGGC AAAAA GCCCAG GACCACTACTCAGAG SSU98_0299 294721 - 295548 + | lipoate-protein ligase A SSU98_0300 295558 - 297006 + | amidase TERM 393 297115 - 297100 - g 100 -9 -5.54079 | opp_overlap 297112, overlap 297105 CGAAAAAGTAAAAAA GGAAGC TATG GCTTCC AAAGGAGATTGTTTT TERM 394 297270 - 297249 - g 75 -3.1 -5.09426 | CTCAATGGGAAAAAA TTCAAGA AGCTGGTG TCTTGAA AGTTGCTACACCAGG SSU98_0301 297053 - 298006 + | amino acid ABC transporter periplasmic protein TERM 395 298031 - 298074 + F 95 -11.2 -4.56597 | gap 1, opp_overlap 298041, overlap 298033 298035 298037 ACAAATTAAATGCAT CTTGTATAGACTTTGTCAGTC ACA GACTGGCAAGGTCTAT-CTGG TTTTTAGGAAAGAGG TERM 396 298033 - 298073 + F 82 -11.3 -3.33744 | opp_overlap 298041, overlap 298031 298035 298037 AAATTAAATGCATCT TGTATAGACTTTGTCAGTC ACA GACTGGCAAGGTCTATCTG GTTTTTAGGAAAGAG TERM 397 298035 - 298071 + F 100 -13.9 -3.23708 | opp_overlap 298041, overlap 298033 298031 298037 ATTAAATGCATCTTG TATAGACTTTGTCAGTC ACA GACTGGCAAGGTCTATC TGGTTTTTAGGAAAG TERM 398 298037 - 298069 + F 100 -16.5 -3.18031 | opp_overlap 298041, overlap 298035 298033 298031 TAAATGCATCTTGTA TAGACTTTGTCAGTC ACA GACTGGCAAGGTCTA TCTGGTTTTTAGGAA SSU98_0302 298097 - 298768 + | ABC-type amino acid transport system, permease component SSU98_0303 299131 - 298892 - | transcriptional regulator SSU98_0304 299627 - 299103 - | hypothetical protein TERM 399 299644 - 299691 + r 100 -12.6 -4.62069 | opp_overlap 299675, overlap 299642 GCAAACCTCCGATTA TTATTGTTTTATGATAATATTA TCTG TAAAATTATTATAAAACAATAA TTTTTGAAATGCAAG TERM 400 299754 - 299737 - R 100 -9.1 -5.01823 | opp_overlap 299737 AGAATAATAAGAAAA CCGCCAA CTAC CTGGCGG TTTGAAGCTATTTAA TERM 401 299737 - 299754 + r 72 -8.4 -3.62518 | opp_overlap 299737 AGAATAATAAGAAAA CCGCCA ACTACC TGGCGG TTTGAAGCTATTTAA SSU98_0305 301663 - 299762 - | cation transport ATPase TERM 402 300226 - 300240 + g 73 -5.6 -4.44046 | opp_overlap 300226, overlap 300228 CACCCGTCAAGAGAA TTGGCG TCA CGCCCA TTTCTTTCAACTGGG TERM 403 301777 - 301763 - R 100 -4.9 -6.23545 | opp_overlap 301763 GGGAAATAAAAAAAA GCGAC AGAAA GCCGC TTGGATATTCGTCTT SSU98_0306 302248 - 301793 - | Fe2+/Zn2+ uptake regulation protein TERM 404 302631 - 302645 + G 70 -7.8 -3.61178 | GCTGGCAGTCGAGAT GTGGAG AAG CTCCGC TTTGCCCTGGATACC truA 302415 - 303164 + | tRNA pseudouridine synthase A SSU98_0308 303154 - 303915 + | phosphomethylpyrimidine kinase SSU98_0309 303863 - 304390 + | hypothetical protein TERM 405 304461 - 304446 - g 71 -4.7 -4.60041 | opp_overlap 304446 AGCGATCTTCAAAAA GGACA GATATT TGTCC TTGGATTGTCCTCTA TERM 406 304520 - 304508 - g 77 -6.3 -4.61231 | opp_overlap 304508 304507 GCATATCGGGAAAAA TTCCA GTC TGGAA GTTGGTGAGGTGGTT SSU98_0310 304371 - 304937 + | hypothetical protein SSU98_0312 305416 - 305303 - | hypothetical protein SSU98_0311 304937 - 305551 + | hypothetical protein TERM 407 305705 - 305731 + FH 88 -3.1 -5.9362 | ATTGAGTATCAGGAA GTAACTTTC GACTAGTAA GAGAGTTAC TTTTTTTATCTTTTG SSU98_0313 305824 - 306588 + | hypothetical protein TERM 408 306678 - 306697 + F 91 -13.6 -2.53581 | AGGTGCAGGTTGCTA GCACAGCC TAGT GGCTGTGC TAGGTTGGAGATATA SSU98_0314 306842 - 307300 + | transcriptional regulator TERM 409 307296 - 307311 + F 82 -7.6 -4.4009 | opp_overlap 307291 CACAAGTAACCCGAA TCTGAC CTCG GTCAGA TTTTATAAACTCAAA SSU98_0315 307380 - 308381 + | NADPH:quinone reductase and related Zn-dependent oxidoreductases TERM 410 308854 - 308834 - g 79 -6.8 -4.67234 | opp_overlap 308833 AGGTAACTGGAAAAA CCTTCCGC TATAT GCTGAAGG CTGGTTTAGAGCGTG SSU98_0316 308407 - 309252 + | alpha/beta superfamily hydrolase/acyltransferase SSU98_0317 309245 - 310114 + | dehydrogenase TERM 411 310876 - 310899 + GF 70 -3.8 -4.77438 | ACCTGATTGAAATTT CAGGTGGC AATTATGA GACACCTG TTTTTGGTAGTGACT SSU98_0318 310071 - 311282 + | NADH:flavin oxidoreductase SSU98_0319 311292 - 311741 + | hypothetical protein TERM 412 311928 - 311961 + T 100 -9.1 -4.95957 | gap 1, opp_overlap 311928 CACTATACACAAAAA GACTTAGAGTGACTGA ACA TCAGTTG-TCTAAGTC TTTTTGCTTGGTTTG TERM 413 311961 - 311928 - T 76 -4.7 -5.05601 | gap 1, opp_overlap 311928 CACTATACACAAAAA GACTTAGAGTGACTGA ACA TCAGTTG-TCTAAGTC TTTTTGCTTGGTTTG SSU98_0320 312582 - 312001 - | transcriptional regulator SSU98_0321 312609 - 313574 + | lipase TERM 414 313826 - 313812 - g 71 -8.6 -3.5511 | opp_overlap 313814, overlap 313810 GTTTATGTACAAAGA GAGTTC ACC GAACTC TTACAGTCCTCTTTA SSU98_0322 313681 - 314700 + | hypothetical protein SSU98_0323 314896 - 314783 - | hypothetical protein TERM 415 314965 - 314949 - g 75 -5.1 -4.78077 | TTGAAGCAAAAGAAA CAAATCG CGG CGTTTTG ACTTTCACAATCGGT tig 314921 - 316204 + | trigger factor TERM 416 316217 - 316232 + F 93 -6.8 -5.68438 | opp_overlap 316217 TAATTATTTGGAAAA CTCGAC TCTG GTCGGG TTTTTTGTTTAATCA SSU98_0325 316237 - 317139 + | glycosyl transferase, group 2 family protein TERM 417 317145 - 317177 + F 81 -4.2 -5.41143 | ATTCGTTTAAGTAAA GGTAAGACTGGCTT ATAAA AAGAAAGTCTTATC TTTTTTTAAAAAATA SSU98_0326 317248 - 318108 + | ABC-type metal ion transport system, periplasmic component/surface adhesin TERM 418 318189 - 318172 - f 79 -4.8 -5.11836 | AGAGTTAAAATAAAA GGCCGA ATTCTA TCGACC GAAAGGAGAAAAAAT SSU98_0327 318203 - 321358 + | hypothetical protein TERM 419 321403 - 321358 - f 74 -9.3 -3.07232 | gap 1, opp_overlap 321368, overlap 321363 321368 AGAAGAACAAGTATA GTAAACAAAATACCTGTAGCAC TGA GCTCTGCAGGTATTTT-TTTAC AGAAAAACGATAAAG TERM 420 321368 - 321394 + F 89 -5.8 -5.40072 | opp_overlap 321363 321358 321368 GTATAGTAAACAAAA TACCTGTAGCAC TGA GCTCTGCAGGTA TTTTTTTACAGAAAA TERM 421 321394 - 321368 - f 80 -5.8 -4.97158 | opp_overlap 321368, overlap 321363 321358 GTATAGTAAACAAAA TACCTGTAGCAC TGA GCTCTGCAGGTA TTTTTTTACAGAAAA SSU98_0328 321485 - 322018 + | DNA-directed RNA polymerase subunit delta TERM 422 322153 - 322176 + G 100 -9.6 -5.84011 | overlap 322155 CCTCTTTTGAGGTCG GAGCTCCCTA GCGA TAGGGAGCTA TTTTTGTTTTTTCTT TERM 423 322155 - 322174 + G 100 -12.2 -4.48934 | overlap 322153 TCTTTTGAGGTCGGA GCTCCCTA GCGA TAGGGAGC TATTTTTGTTTTTTC SSU98_0329 322144 - 323862 + | CTP synthetase TERM 424 323880 - 323903 + F 73 -6.1 -4.36366 | opp_overlap 323880 323899, overlap 323873 ATAACCATTATAGAA GAAGATTGG TATCAT TCAATCTTC TTTATATATTTTATA TERM 425 324233 - 324252 + F 100 -12.2 -4.65153 | CACTCTCCGCATAGT GGACTAGC TAAG GCTAGTCC TTTTGCTTTGTCTAG SSU98_0330 324463 - 325344 + | fructose-bisphosphate aldolase TERM 426 325430 - 325411 - f 76 -5 -5.02715 | opp_overlap 325411 AGATTAAACCAAAAA GGATTTTC TTTC GAGAATCC TTTTTATTATAATAG TERM 427 325411 - 325430 + F 90 -7.2 -5.22006 | opp_overlap 325411 AGATTAAACCAAAAA GGATTTTC TTTC GAGAATCC TTTTTATTATAATAG rpmB 325737 - 325925 + | 50S ribosomal protein L28 TERM 428 325933 - 325954 + F 100 -9.5 -5.26119 | opp_overlap 325933 GTGTATAATAACAAA GTCGTTAGA AAAA TCTAGCGAC TTTTGTTTTTGGAAA TERM 429 325954 - 325933 - f 79 -7.3 -4.51812 | opp_overlap 325933 GTGTATAATAACAAA GTCGTTAGA AAAA TCTAGCGAC TTTTGTTTTTGGAAA TERM 430 326409 - 326388 - f 71 -8.7 -3.25317 | overlap 326386 326384 TGATAAACTAAGATA GTTGTCGCG AGAG CGCGATAAC GACAAGACCTTTGAA TERM 431 327554 - 327567 + F 70 -3.1 -5.06414 | overlap 327555 ACATCCCGATGACCG TCCTA GAGA TAGGG TTTTTCTTCGGAGCA TERM 432 328760 - 328781 + F 74 -10.1 -2.58544 | opp_overlap 328761, overlap 328759 ACGGCAGGAGGGCAA ACCGAGGAG TTTA CTCCTCGGG GTTGTAGGACTGCAA TERM 433 328780 - 328761 - f 100 -13.6 -3.62096 | opp_overlap 328760 328759 CGGCAGGAGGGCAAA CCGAGGAG TTTA CTCCTCGG GGTTGTAGGACTGCA TERM 434 328837 - 328822 - f 74 -7.6 -3.92604 | AAGAGTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 435 328860 - 328870 + F 74 -2.6 -5.28176 | AGAGTAATAGCCTCG TATT TAA AATA TTTTTTATACCTAGC TERM 436 331562 - 331574 + F 78 -10.5 -3.09327 | ACGCCTGAAGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 437 331777 - 331793 + F 100 -6.6 -6.47325 | TACGGACTATATTTG GAGACT GCTTA AGTCTC TTTTTTTTGTTTTTT TERM 438 332440 - 332453 + G 75 -5.9 -4.63184 | opp_overlap 332440 332441, overlap 332441 CTATCGGTTAATGAA TCGCC GAGA GGCGG TTTTTGCGATGCATT SSU98_0333 331889 - 333796 + | RecG-like helicase TERM 439 333940 - 333919 - T 100 -8.7 -5.38047 | opp_overlap 333919, overlap 333921 TAGTCATATAAAAAA GGCCAACAC ACAT GTGTTGGTC TTTTGACATATTGTA TERM 440 333919 - 333940 + T 90 -10.9 -4.20712 | opp_overlap 333919 333921 TAGTCATATAAAAAA GGCCAACAC ACAT GTGTTGGTC TTTTGACATATTGTA TERM 441 333938 - 333921 - T 75 -9.9 -2.87962 | opp_overlap 333919, overlap 333919 GTCATATAAAAAAGG CCAACAC ACAT GTGTTGG TCTTTTGACATATTG SSU98_0334 334929 - 333970 - | L-asparaginase/ Glu-tRNAGln amidotransferase subunit D TERM 442 335131 - 335141 + G 71 -2.4 -5.09259 | opp_overlap 335131, overlap 335126 GGTCTAGCTACAGGA CGTG ATC CTCG TTTTGTTTTGCAGTA SSU98_0335 334990 - 335844 + | HAD superfamily hydrolase TERM 443 336238 - 336249 + G 70 -5.8 -4.28361 | opp_overlap 336231 GAAAACATTTCCAGA TGGG AAGG CCCA TTTTGATCCAATTAC SSU98_0336 335834 - 336364 + | hypothetical protein TERM 444 336377 - 336346 - T 75 -10.4 -2.55585 | opp_overlap 336346 336351, overlap 336351 GCTGAAAAGACAGAT GAAAAGACTTGATT CGTA AATCAAGTCTTTTG GTTTATAAACTTTTT TERM 445 336346 - 336377 + T 78 -10.4 -2.98323 | opp_overlap 336346 336351, overlap 336351 GCTGAAAAGACAGAT GAAAAGACTTGATT CGTA AATCAAGTCTTTTG GTTTATAAACTTTTT TERM 446 336351 - 336372 + T 95 -10.3 -4.61873 | opp_overlap 336346 336351, overlap 336346 AAAGACAGATGAAAA GACTTGATT CGTA AATCAAGTC TTTTGGTTTATAAAC TERM 447 336372 - 336351 - T 95 -10.3 -4.43864 | opp_overlap 336351 336346, overlap 336346 AAAGACAGATGAAAA GACTTGATT CGTA AATCAAGTC TTTTGGTTTATAAAC SSU98_0337 336841 - 336380 - | universal stress protein UspA-like nucleotide-binding protein SSU98_0338 336987 - 337223 + | aspartate/tyrosine/aromatic aminotransferase SSU98_0339 337345 - 337443 + | hypothetical protein TERM 448 337828 - 337843 + G 76 -7.6 -4.18018 | ATGTTGTCCAATATG CGTTTG TGTT CAAACG TTTTGGCTCAACAGG SSU98_0340 337465 - 338220 + | aspartate/tyrosine/aromatic aminotransferase TERM 449 338357 - 338343 - f 75 -8.6 -3.63627 | opp_overlap 338343 TCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGAGAT TERM 450 338343 - 338357 + F 78 -8.6 -3.66356 | opp_overlap 338343 TCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGAGAT TERM 451 338390 - 338376 - f 77 -10 -3.2614 | opp_overlap 338371 GAGGTTGGAGATGAA GCGAAC TCT GTTCGC ATCAGTCGTATAGGT TERM 452 338478 - 338511 + F 78 -6 -4.88407 | gap 1, opp_overlap 338482, overlap 338483 338485 338486 TGACACTAACTTTGA GAAGCGGTGCTGGGC TTTTT GCCCAGC-CTATTTC TTTTTGCTTGGATGA TERM 453 338483 - 338507 + F 70 -3.4 -4.96773 | opp_overlap 338482, overlap 338478 338485 338486 CTAACTTTGAGAAGC GGTGCTGGGC TTTTT GCCCAGCCTA TTTCTTTTTGCTTGG TERM 454 338485 - 338505 + F 79 -8.2 -4.08353 | opp_overlap 338482, overlap 338483 338478 338486 AACTTTGAGAAGCGG TGCTGGGC TTTTT GCCCAGCC TATTTCTTTTTGCTT TERM 455 338486 - 338504 + F 83 -11.7 -3.02572 | opp_overlap 338482, overlap 338485 338483 338478 ACTTTGAGAAGCGGT GCTGGGC TTTTT GCCCAGC CTATTTCTTTTTGCT SSU98_0341 338629 - 339417 + | transcriptional repressor CodY SSU98_0342 339451 - 339960 + | nicotinamidase-like amidase TERM 456 339972 - 339987 + F 90 -9 -4.57837 | TTAATAGTATAGTGA CCAGTC TGTG GACTGG TTTTTACAGGAATCT TERM 457 340230 - 340215 - g 71 -4 -4.82819 | GATAGGAGAATAAAA TGAATC CATT GATCCA AAGTTTGACAGAAGG rplS 340214 - 340561 + | 50S ribosomal protein L19 TERM 458 340596 - 340615 + F 100 -10 -5.40072 | TTGGTCGGAGAATGG GAGGCAGC GAAA GCTGTCTC TTTTTTTAAAAAAAA SSU98_0344 340717 - 341397 + | hypothetical protein TERM 459 341423 - 341454 + F 100 -8.2 -5.4588 | opp_overlap 341423 GATAGGCTAAGCAAA CAGTAAGTTTTATT GCTA GATGAAACTTGCTG TTTTTTATCGTTTTA gatC 341614 - 341916 + | aspartyl/glutamyl-tRNA amidotransferase subunit C gatA 341916 - 343382 + | aspartyl/glutamyl-tRNA amidotransferase subunit A gatB 343382 - 344821 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 460 344844 - 344830 - f 73 -7.2 -4.12188 | GGATTAGTTTTAAAA CTATAG AAA CTATAG AATACAAAAATCACT TERM 461 344855 - 344871 + F 84 -4.4 -5.4833 | opp_overlap 344855 344856, overlap 344856 TATAGAATACAAAAA TCACTC AAAAA GAGTGG TTTTTTGTTGACTAA SSU98_0348 344942 - 345565 + | deoxyguanosinetriphosphate triphosphohydrolase-related protein SSU98_0349 345550 - 346290 + | deoxyguanosinetriphosphate triphosphohydrolase-related protein TERM 462 346295 - 346346 + T 83 -9 -4.2558 | gap 1, opp_overlap 346308, overlap 346296 346307 346308 TACATAAATAGCCAT ATGTTTAAGAAAA-CCGAGAGTTCG TGT TGAATTCTCGGGTTTTCTTATGCAC TTTTAGTAAGAACTC TERM 463 346296 - 346345 + T 90 -12.5 -3.15027 | gap 1, opp_overlap 346308, overlap 346295 346307 346308 ACATAAATAGCCATA TGTTTAAGAAAA-CCGAGAGTTCG TGT TGAATTCTCGGGTTTTCTTATGCA CTTTTAGTAAGAACT TERM 464 346307 - 346333 + T 88 -8 -4.78839 | opp_overlap 346308, overlap 346296 346295 346308 CATATGTTTAAGAAA ACCGAGAGTTCG TGT TGAATTCTCGGG TTTTCTTATGCACTT TERM 465 346308 - 346332 + T 85 -11.5 -3.46219 | opp_overlap 346308, overlap 346307 346296 346295 ATATGTTTAAGAAAA CCGAGAGTTCG TGT TGAATTCTCGG GTTTTCTTATGCACT TERM 466 346332 - 346308 - T 90 -8.6 -4.65078 | opp_overlap 346308 346307 346296 346295 ATATGTTTAAGAAAA CCGAGAGTTC GTGTT GAATTCTCGG GTTTTCTTATGCACT SSU98_0350 347392 - 346349 - | transcriptional regulator SSU98_0351 347518 - 348654 + | galactokinase TERM 467 350108 - 350124 + G 83 -9.5 -4.02132 | opp_overlap 350096, overlap 350110 AAGGACAGGCAGCCT TTCTACG ATT CGTAGAA TTTGTAGGTTTAGCA SSU98_0352 348664 - 350145 + | galactose-1-phosphate uridylyltransferase TERM 468 350156 - 350176 + F 100 -9.7 -4.82667 | opp_overlap 350156 CATAAATGTAAGAAA GAGTGGGAC GGT GTCCTGCTC TTTTTGGTATAATGG TERM 469 350451 - 350422 - g 76 -9.5 -3.55444 | opp_overlap 350409 350422 TTGGCAGTTTTGAAA GATAAAAATGCCT TGCT AGGAATTTTTATC TTTGCCATGCTTGGC TERM 470 350422 - 350451 + G 78 -9.5 -3.63895 | opp_overlap 350422, overlap 350409 TTGGCAGTTTTGAAA GATAAAAATGCCT TGCT AGGAATTTTTATC TTTGCCATGCTTGGC SSU98_0353 350218 - 350667 + | DMT family permease SSU98_0354 350673 - 351128 + | DMT family permease TERM 471 351116 - 351135 + F 76 -2.2 -5.58179 | opp_overlap 351116, overlap 351110 ATTGGTTGCCCAAAA GAGTAT TGGTTAAT ATACTC TTTTTTGTTATACTA SSU98_0355 351161 - 351805 + | hypothetical protein TERM 472 351931 - 351961 + F 88 -4.7 -5.47159 | opp_overlap 351926, overlap 351932 351937 TTCATATAATCTCCA CGGAAGCAGTCGA CATGT TCGGCTGTTTTCA TTTTTGTTTGTTAAA TERM 473 351932 - 351960 + F 77 -8.2 -3.86668 | opp_overlap 351926, overlap 351931 351937 TCATATAATCTCCAC GGAAGCAGTCGA CATGT TCGGCTGTTTTC ATTTTTGTTTGTTAA TERM 474 351937 - 351955 + F 80 -6.7 -4.88326 | overlap 351932 351931 TAATCTCCACGGAAG CAGTCGA CATGT TCGGCTG TTTTCATTTTTGTTT SSU98_0356 352012 - 352386 + | hypothetical protein TERM 475 352474 - 352502 + F 81 -11.8 -2.66733 | opp_overlap 352468 352477 352481, overlap 352479 ATTACATTACCTCCA GAAGGCACTCGG TTGAT CCGAGTGTTTTC TGCTATCGATTCGCA TERM 476 352479 - 352497 + F 95 -10.3 -4.51378 | opp_overlap 352477 352481, overlap 352474 ATTACCTCCAGAAGG CACTCGG TTGAT CCGAGTG TTTTCTGCTATCGAT TERM 477 352968 - 353001 + G 73 -9.7 -2.91264 | GCGAGCTGGTCTCAA GTCTGTCTTGGTCAA ACCC TTGATAAAGACGGAC TCTATCAATACGCAG SSU98_0357 352558 - 353097 + | HAD superfamily hydrolase TERM 478 353206 - 353191 - g 74 -4.6 -4.84359 | overlap 353179 353193 353204 TCAGCCCTAGAAAAA GGCCTG GAAA CAGGGC AACTCTACTGCCAAC SSU98_0358 353098 - 354204 + | GTP-binding protein YqeH TERM 479 354568 - 354554 - g 75 -5.7 -4.61231 | TCAGATTGGGAAAAA TGGTC TAAAT GACCA GATTAAAACCAGTGT SSU98_0359 354477 - 354785 + | RNA-binding protein nadD 354798 - 355430 + | nicotinic acid mononucleotide adenylyltransferase TERM 480 355584 - 355574 - g 71 -3.2 -5.0538 | TGTGATCCGAAAAAA GCCA GTC TAGC AGCACTCTTGCATGA SSU98_0361 355427 - 356014 + | HD superfamily hydrolase SSU98_0362 356172 - 356282 + | histone acetyltransferase HPA2-like acetyltransferase TERM 481 356388 - 356374 - f 75 -8.6 -3.63627 | opp_overlap 356374 CCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGAGAT TERM 482 356374 - 356388 + F 78 -8.6 -3.66356 | opp_overlap 356374 CCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGAGAT TERM 483 356421 - 356407 - f 77 -10 -3.2614 | GAGGTTGGAGATGAA GCGAAC TCT GTTCGC ATCAGTCGTAGAGGC SSU98_0363 356563 - 356847 + | histone acetyltransferase HPA2-like acetyltransferase SSU98_0364 356977 - 357354 + | nicotinamidase-like amidase SSU98_0365 357356 - 357715 + | hypothetical protein TERM 484 357740 - 357716 - f 73 -10.2 -2.56181 | opp_overlap 357721, overlap 357715 357721 TTAGAAGAGGAATAG TGAAACAGTT TGGGG AACTGTTTCA GCTGGTCACCATAAA TERM 485 357940 - 357989 + F 100 -11 -4.82901 | gap 2 CCTAATCAACTGTGC GGGGGCAGGAAAACGAACTCTTTG GAAT TGAGGAGTTC-TT-TCCTGCTCCC TTTTTATGAAAGGAA TERM 486 358252 - 358242 - g 88 -6.8 -5.24129 | opp_overlap 358242 TTGGCCCAGAAAAAA GCAG AAG CTGC TGGTGTCATGATGGA SSU98_0366 358017 - 358760 + | SAM-dependent methyltransferase SSU98_0367 358804 - 362907 + | hypothetical protein SSU98_0368 362966 - 364057 + | hypothetical protein SSU98_0369 364153 - 364872 + | putative transcriptional regulator TERM 487 364882 - 364899 + F 89 -6.3 -5.30189 | opp_overlap 364874 364882, overlap 364874 GAATAAACGAAAGAA GTCTAGT GAGA ACTAGGC TTTTTTAGTATTATG SSU98_0370 364968 - 365486 + | hypothetical protein TERM 488 366034 - 366024 - g 71 -6.8 -4.16016 | CTAGTTGTTAACAAA GCAG ACA CTGC GGCCTTATCAACTTT SSU98_0371 365676 - 367502 + | hypothetical protein TERM 489 368236 - 368215 - gT 88 -8.1 -4.67048 | GTACCTGAAAACAAA GAACAAGAA TACA TTCTTGTCC TCCTGGCAACGCCAG TERM 490 368239 - 368251 + GT 86 -9.1 -4.28254 | TACATTCTTGTCCTC CTGGC AAC GCCAG TTTTGGATGTTACAG SSU98_0373 368714 - 368538 - | hypothetical protein TERM 491 369256 - 369228 - gH 91 -11.9 -3.53091 | ACTTCCTTTGGGAAA TATTTTCCACATG AAT CATGAGGAAAATA CAGCAGTTCAGCTTT TERM 492 370662 - 370648 - gH 70 -2.8 -5.04325 | TTGAAAGCAGAAAAA GGGT TAGAGCC ACCC GCTTTGACACAGGTA SSU98_0372 367492 - 370830 + | putative ATP-binding protein SSU98_0374 370803 - 371426 + | hypothetical protein SSU98_0375 371423 - 371833 + | hypothetical protein SSU98_0376 372079 - 372240 + | N-formylmethionyl-tRNA deformylase TERM 493 372242 - 372257 + F 100 -7.6 -5.71712 | opp_overlap 372242 GGATTATCATCTAAA TCTACC GTCA GGTAGA TTTTTTTGTATAAAA TERM 494 372257 - 372242 - f 72 -7.6 -3.69323 | opp_overlap 372242 GGATTATCATCTAAA TCTACC GTCA GGTAGA TTTTTTTGTATAAAA TERM 495 373109 - 373127 + G 71 -6.8 -4.10161 | AATATCATTCTCTTC TTTGATGA AAT TCATCAGA TTTTGGGAGCTGGTA SSU98_0377 372545 - 374443 + | ATPases with chaperone activity, ATP-binding subunit SSU98_0378 374470 - 374643 + | ATPases with chaperone activity, ATP-binding subunit TERM 496 374660 - 374690 + F 88 -5.7 -5.64873 | gap 1, opp_overlap 374666, overlap 374666 AATAGTGAAGAATTT GAA-AAATCGGATA GAAA TATCTGATTTTTTC TTTTTTGTTATTCGC TERM 497 374666 - 374683 + F 95 -4.9 -6.07374 | opp_overlap 374666, overlap 374660 GAAGAATTTGAAAAA TCGGATA GAAA TATCTGA TTTTTTCTTTTTTGT SSU98_0379 374826 - 376334 + | 4-alpha-glucanotransferase SSU98_0380 376318 - 378591 + | glucan phosphorylase TERM 498 378760 - 378721 - T 100 -13.8 -4.08706 | opp_overlap 378727 378756, overlap 378727 TCCTTAGTATATAAA TGCAAAGAATGTCTCTGC AAAA GCAGAGACATTCTTTTTA TAACTATAAAATTCT TERM 499 378727 - 378754 + T 100 -17.2 -4.89852 | opp_overlap 378727 378721 GTATATAAATGCAAA GAATGTCTCTGC AAAA GCAGAGACATTC TTTTTATAACTATAA TERM 500 378754 - 378727 - T 100 -17.2 -3.91402 | opp_overlap 378727, overlap 378721 GTATATAAATGCAAA GAATGTCTCTGC AAAA GCAGAGACATTC TTTTTATAACTATAA SSU98_0381 379372 - 378818 - | transcriptional regulator SSU98_0382 379526 - 379374 - | hypothetical protein SSU98_0383 379656 - 380516 + | metal-dependent hydrolase SSU98_0384 380550 - 382718 + | phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific TERM 501 382730 - 382765 + T 93 -6.5 -5.48213 | gap 2, opp_overlap 382730 GTAAAAAGTAAAAAA GATTGAAAAGATGATTG CAGT CAA-C-TCTTTTCAATC TTTTTCTTTTGGATA TERM 502 382765 - 382730 - T 93 -6.5 -5.54079 | gap 2, opp_overlap 382730 GTAAAAAGTAAAAAA GATTGAAAAGATGATTG CAGT CAA-C-TCTTTTCAATC TTTTTCTTTTGGATA SSU98_0385 383415 - 382789 - | hypothetical protein SSU98_0386 383737 - 383426 - | transcriptional regulator TERM 503 383839 - 383821 - H 71 -9 -3.13475 | opp_overlap 383824, overlap 383824 CAACTGTATAGTGAA GAAGATTT TAA AAATCTTC TCAATCCTTGCCATT TERM 504 384142 - 384130 - g 74 -7.7 -3.94989 | opp_overlap 384130 384130, overlap 384125 384123 GAAACACAGACGAAA CCTTC GTG GAAGG TCGTTACGAAGGCTT TERM 505 384604 - 384589 - g 84 -6.2 -5.04987 | opp_overlap 384589 AAGACGTCCAAAAAA TCTACA CAAA TGTAGA TGGGTTTTAATATAA SSU98_0387 383898 - 384614 + | hypothetical protein TERM 506 384617 - 384645 + F 100 -14.9 -3.04322 | opp_overlap 384617 384625, overlap 384625 AGATGGGTTTTAATA TAAAAAAAGTGCT AGT AGCACTTTTTTTA TATTAAAAGGTTGGA TERM 507 384645 - 384617 - f 100 -14.9 -3.02263 | opp_overlap 384617 384625, overlap 384625 AGATGGGTTTTAATA TAAAAAAAGTGCT AGT AGCACTTTTTTTA TATTAAAAGGTTGGA TERM 508 384637 - 384625 - f 100 -7.7 -5.80817 | opp_overlap 384625 384617, overlap 384617 TTTAATATAAAAAAA GTGCT AGT AGCAC TTTTTTTATATTAAA TERM 509 384625 - 384637 + F 100 -7.7 -5.80817 | opp_overlap 384617 384625, overlap 384617 TTTAATATAAAAAAA GTGCT AGT AGCAC TTTTTTTATATTAAA TERM 510 384666 - 384685 + F 79 -10.8 -2.8474 | overlap 384664 384669 AAAGGTTGGAGATTG GAATCGTC GGTA GACGATTC TCATTGTACGTGGGA TERM 511 384726 - 384739 + F 95 -8.1 -5.05113 | GGTTGGAGATTGGAA CTGCC GTTA GGCAG TTTTCTTTGTATCCA SSU98_0388 384978 - 385463 + | hypothetical protein SSU98_0389 385429 - 385827 + | hypothetical protein TERM 512 386066 - 386082 + G 73 -7.3 -4.13767 | TTCGTTGACTTACGG TCCATGG TGG TCATGGA TTTTGGCATCAGGGG SSU98_0390 385848 - 386393 + | hypothetical protein TERM 513 386405 - 386424 + F 100 -10.8 -5.08824 | TTAAGTTTTTATTTT CCCTAGAA AAAA TTCTAGGG TTTTTTCAATACCAA SSU98_0391 386483 - 387421 + | hypothetical protein TERM 514 387447 - 387475 + F 84 -4.6 -5.50499 | opp_overlap 387447 387451, overlap 387449 387451 CGAACCTTCAATAAA TGCAGTAGCATG TCATT CATGTTACCGTA TTTTTTTACATATAA SSU98_0392 387634 - 388617 + | hypothetical protein TERM 515 388629 - 388650 + T 100 -8.1 -5.626 | opp_overlap 388629 TTAGTAATACCAAAA TTGCATTGA AAAA TCAGTGCAA TTTTTTTGTGCAATC TERM 516 388650 - 388629 - T 73 -5.9 -4.44797 | opp_overlap 388629 TTAGTAATACCAAAA TTGCATTGA AAAA TCAGTGCAA TTTTTTTGTGCAATC SSU98_0393 388772 - 388674 - | hypothetical protein SSU98_0394 388944 - 389186 + | lactoylglutathione lyase TERM 517 389247 - 389268 + F 84 -5.1 -5.42259 | opp_overlap 389247 GAACTTATTTGAAAA GGGAGAAAC TGAT GATTCTTCC TTTTTTTCAGAGTCA SSU98_0395 389304 - 390977 + | ABC-type cobalt transport system, ATPase component SSU98_0396 390974 - 391807 + | ABC-type cobalt transport system, permease component CbiQ and related transporters SSU98_0397 391967 - 392170 + | cold shock protein TERM 518 392202 - 392176 - T 100 -10.9 -4.78839 | opp_overlap 392176 AATTGGATAATAAAA GAGCGGGTTTC TTAGT GAAACTCGCTC TTCTTATGTTTAAAG TERM 519 392176 - 392202 + T 100 -13.1 -4.03586 | opp_overlap 392176 AATTGGATAATAAAA GAGCGGGTTTC TTAGT GAAACTCGCTC TTCTTATGTTTAAAG gidB 392925 - 392212 - | glucose-inhibited division protein B TERM 520 392249 - 392269 + g 91 -6.2 -5.45802 | ATACCAGCTTTGCGT GGAAACTT ATTTG GAGTTTCC TTTTTCTTTTCGACG TERM 521 392885 - 392900 + g 93 -9 -4.41206 | opp_overlap 392885 392883 TCAGTTAATTGAATA CCTTGG TCTG CCAAGG TTTTATAAAATACTT TERM 522 392976 - 392961 - RH 100 -9 -5.54338 | opp_overlap 392960 392955 392961 TAAGCAAAAGAAAAA CCCAGA AGAG TCTGGG AATTTTCTTATTGAC TERM 523 393002 - 393014 + rH 81 -9.1 -4.11363 | overlap 393010 TTGACCATCTGTCTG TCCCG TTG CGGGA TTGTTTCCTGTTGTT SSU98_0400 395170 - 392984 - | membrane carboxypeptidase (penicillin-binding protein) SSU98_0399 393015 - 393158 + | hypothetical protein TERM 524 393547 - 393579 + gT 78 -9.2 -3.53444 | opp_overlap 393547, overlap 393567 393568 AACCGTAAGACATAA CAGCCTTCATCATG TCGGT CATCATGTAGGCTG TTTCGGCAGACATGA TERM 525 393579 - 393547 - GT 81 -9.2 -3.6914 | opp_overlap 393547 393567 393568 AACCGTAAGACATAA CAGCCTTCATCATG TCGGT CATCATGTAGGCTG TTTCGGCAGACATGA TERM 526 394090 - 394104 + gT 71 -5 -4.56978 | overlap 394058 394095 CGGCTTGGTTGGTAC CAAATG AGA CGTTTG TTTCTTGTTTACGAC TERM 527 394892 - 394904 + gT 70 -7.7 -3.57387 | ACGTTGGTCTTCGAT TGCGA CAA TCGCA TTTACCAAGTCTGTT recU 395756 - 395139 - | Holliday junction-specific endonuclease SSU98_0402 395822 - 396361 + | hypothetical protein SSU98_0403 396432 - 396767 + | cell division initiation protein TERM 528 397289 - 397303 + F 100 -10 -4.77165 | opp_overlap 397286 TGCATAAAATAGGTA GCTAGC TCT GCTAGC TTTTATTGTAGAGGA SSU98_0405 397337 - 397456 + | hypothetical protein TERM 529 397856 - 397846 - gf 78 -6.8 -4.57073 | TATCGGGTGGAAAAA GGTG GCG CACC AATCAAAGAAAATAT SSU98_0404 397324 - 398274 + | N6-adenine-specific DNA methylase TERM 530 399007 - 398995 - g 70 -2.7 -4.9218 | TAGGGATCAGAAAAA GAAAT TTT ACTTC TGGTCAGCAGTAGGG SSU98_0406 398561 - 399955 + | hypothetical protein TERM 531 399981 - 400020 + T 88 -5.2 -5.7827 | gap 1 GGTTTATCTGCTTCG GATTGAAG-AAAAAGTTCA TTT TGGACAATTTCCTTCAATC TTTTTTCTTTGTGTT TERM 532 400153 - 400134 - T 91 -13.6 -2.53581 | TATATCTCCAACCTA GCACAGCC ACTA GGCTGTGC TAGCAACCTGCACCT TERM 533 400246 - 400211 - T 100 -8.4 -5.67063 | opp_overlap 400211 TCGACTATAAAAAAA CTCTCAGAAACGCCGA AATA TCAATGTTTCTAAGAG TTTAATGATTTGCTA TERM 534 400317 - 400329 + T 93 -6.2 -5.83226 | TTGTCTACGTTCTGA GCGG TGTAT CCGC TTTTTTTGTTAGATT SSU98_0407 400832 - 400338 - | S-ribosylhomocysteinase TERM 535 402535 - 402520 - g 70 -5.4 -4.51363 | CAGGAAATATCAAAA TCACAG TTAT CCGTGA AACAAGAGCAACAGA SSU98_0408 400950 - 402563 + | hypothetical protein TERM 536 402572 - 402586 + F 89 -7.8 -4.9218 | opp_overlap 402572 TAAGTAAATGTAGAA GAGTCC GAA GGGCTC TTTTTCTACTGGCTC gmk 402694 - 403344 + | guanylate kinase SSU98_0410 403368 - 403682 + | DNA-directed RNA polymerase subunit omega TERM 537 403691 - 403713 + F 83 -6.9 -4.74598 | opp_overlap 403691 403689 GATTTAGATACAAGA CTCGGTTGG GATTG CCATCCGGG TTTCTTTTCACTTTC SSU98_0411 403827 - 406265 + | primosome assembly protein PriA TERM 538 406261 - 406284 + F 100 -8.2 -6.09196 | opp_overlap 406261 AACCGCAGAATATGA TGTGAGGTCA CTAT TGACCTTGCA TTTTTTTGTTTTAAG TERM 539 406539 - 406526 - g 87 -5.3 -5.52384 | GTTGGACGAAAAAAA GTCAT CCAA ATGAC ACCTGTGAAAGAAGT fmt 406397 - 407335 + | methionyl-tRNA formyltransferase SSU98_0413 407322 - 408635 + | tRNA and rRNA cytosine-C5-methylase SSU98_0414 408598 - 409410 + | Serine/threonine protein phosphatase TERM 540 409735 - 409719 - g 73 -5.9 -4.55721 | AAACGTTATATAAAA GAAAATG CAC CACTTTC CAACGATGTTGCGGT SSU98_0415 409410 - 411404 + | Serine/threonine protein kinase TERM 541 411476 - 411446 - f 73 -9.8 -2.57092 | opp_overlap 411447, overlap 411451 AATGTCATTAAGTTA TCTAACCTATCACA TTT TGTGATGGGTTAGT TTTTTTATGTTACAC TERM 542 411447 - 411475 + F 100 -15.5 -5.80817 | opp_overlap 411446 411451 ATGTCATTAAGTTAT CTAACCTATCACA TTT TGTGATGGGTTAG TTTTTTTATGTTACA SSU98_0416 411768 - 412520 + | hypothetical protein SSU98_0418 413049 - 413141 + | hypothetical protein SSU98_0417 412517 - 413533 + | Signal transduction histidine kinase TERM 543 413838 - 413824 - gf 70 -6.4 -4.13014 | GCTATATGTTGAAAA CGTCAA GTG CTGACG AAATCTTAGCAGCCA SSU98_0419 413505 - 414146 + | response regulator TERM 544 414179 - 414161 - f 70 -5.4 -4.48987 | GTGGTATAATGAAAA TTAGTTAA TTT TTAACCAA AGGATAGTGGAATTA TERM 545 414656 - 414645 - g 71 -3 -4.99043 | opp_overlap 414645 TTTTTATAAAGAAAA TGAT ATCT ATCA ATTGTTAACTTTCGA TERM 546 415449 - 415437 - g 73 -5.5 -4.62336 | opp_overlap 415437 AGCCTATGTCAAAAA TGGCG GGA CACCA TATCTGGATCAACGC SSU98_0420 414196 - 415596 + | HAD superfamily hydrolase SSU98_0421 415598 - 415969 + | hypothetical protein TERM 547 415960 - 415987 + T 89 -7.9 -4.92756 | gap 1, opp_overlap 415960 AGAACACAAAGAAAA GAAGGTATAGGA TGCAT TCCTA-ACCTTC TTTCTTTTTAATCAT TERM 548 415987 - 415960 - T 93 -7.9 -5.11389 | gap 1, opp_overlap 415960 AGAACACAAAGAAAA GAAGGTATAGGA TGCAT TCCTA-ACCTTC TTTCTTTTTAATCAT SSU98_0422 416969 - 415995 - | O-acetylserine lyase TERM 549 417004 - 416990 - R 91 -4.3 -5.84432 | opp_overlap 416990, overlap 416982 GATAATATAAAAAAA CTATC TCGCC GATAG CTTTTTTTAATAGAC SSU98_0423 417649 - 417011 - | hypothetical protein SSU98_0424 417697 - 418992 + | superfamily II DNA/RNA helicase SSU98_0425 418985 - 419650 + | amidophosphoribosyltransferase SSU98_0426 419691 - 420269 + | ribosome-associated protein Y (PSrp-1) TERM 550 420311 - 420271 - Tf 78 -7.8 -4.18488 | opp_overlap 420273 420276 420281, overlap 420273 420276 420281 AGGTACGTCAATAAA GATAATAAAACAGTTGCA GTTTT TGCAGCTGTTTTATCATT TTCAAAAAACCGGTT TERM 551 420309 - 420273 - Tf 86 -10.4 -3.69068 | opp_overlap 420273 420276 420281, overlap 420271 420276 420281 GTACGTCAATAAAGA TAATAAAACAGTTGCA GTTTT TGCAGCTGTTTTATCA TTTTCAAAAAACCGG TERM 552 420273 - 420309 + TF 89 -11.1 -4.07568 | opp_overlap 420273 420271 420276 420281, overlap 420276 420281 GTACGTCAATAAAGA TAATAAAACAGTTGCAG TTT TTGCAGCTGTTTTATCA TTTTCAAAAAACCGG TERM 553 420306 - 420276 - Tf 85 -9.9 -3.96841 | opp_overlap 420273 420276 420281, overlap 420273 420271 420281 CGTCAATAAAGATAA TAAAACAGTTGCA GTTTT TGCAGCTGTTTTA TCATTTTCAAAAAAC TERM 554 420276 - 420306 + TF 88 -12.8 -3.08032 | opp_overlap 420276 420273 420271 420281, overlap 420273 420281 CGTCAATAAAGATAA TAAAACAGTTGCAG TTT TTGCAGCTGTTTTA TCATTTTCAAAAAAC TERM 555 420281 - 420301 + TF 88 -8.3 -4.67635 | opp_overlap 420276 420273 420271 420281, overlap 420276 420273 ATAAAGATAATAAAA CAGTTGCAG TTT TTGCAGCTG TTTTATCATTTTCAA TERM 556 420301 - 420281 - Tf 78 -5.4 -4.96657 | opp_overlap 420281 420276 420273, overlap 420276 420273 420271 ATAAAGATAATAAAA CAGTTGCA GTTTT TGCAGCTG TTTTATCATTTTCAA TERM 557 420470 - 420449 - Tf 71 -8.7 -3.25317 | overlap 420447 420445 TGATAAACTAAGATA GTTGTCGCG AGAG CGCGATAAC GACAAGACCTTTGAA TERM 558 421615 - 421628 + TF 73 -6.7 -4.1891 | ACATCCCGATGACCG CCCTA GAGA TAGGG TTTCTCTTCGGAGCA TERM 559 422825 - 422846 + TF 74 -10.1 -2.58544 | opp_overlap 422826, overlap 422824 ACGGCAGGAGGGCAA ACCGAGGAG TTTA CTCCTCGGG GTTGTAGGACTGCAA TERM 560 422845 - 422826 - Tf 100 -13.6 -3.62096 | opp_overlap 422825 422824 CGGCAGGAGGGCAAA CCGAGGAG TTTA CTCCTCGG GGTTGTAGGACTGCA TERM 561 422902 - 422887 - Tf 74 -7.6 -3.92604 | AAGAGTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 562 422925 - 422935 + TF 74 -2.6 -5.28176 | AGAGTAATAGCCTCG TATT TAA AATA TTTTTTATACCTAGC TERM 563 425632 - 425644 + TF 78 -10.5 -3.09327 | ACGCCTGAAGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 564 425967 - 425989 + TF 72 -8.4 -3.55444 | GCGGAATTGGCAGAC GCACCAGATT TAG GATCTGGCGC TTTCGGGCGTGGGGG TERM 565 426167 - 426147 - Tf 78 -9.7 -3.31263 | overlap 426149 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAAT TERM 566 426165 - 426149 - Tf 80 -10.9 -3.22475 | overlap 426147 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA TERM 567 426511 - 426524 + TF 93 -3.1 -6.13 | CCGATTATTGTAAGA GAGCA GCAA TGTTC TTTTTTTTTGGCTCT TERM 568 426578 - 426600 + TF 100 -12.8 -4.76802 | opp_overlap 426575 426582 AAAAGCTAACACCTA GAGAGGACGA AAT TCGTTCTCTC TTTCTTGTTTTTAGG SSU98_0429 426809 - 426654 - | hypothetical protein SSU98_0428 426605 - 426793 + | hypothetical protein TERM 569 427001 - 427058 + TFrH 100 -8.5 -5.33921 | opp_overlap 427006, overlap 427006 CTTTTTTCTACACTC AAAAAGGCTCTATATGACCATAGTGGG TTTA CCCGTCATAGTCTTATAGTGCCTTTTA TTTTTTGCTTAGTTT TERM 570 427006 - 427053 + TFrH 100 -8.4 -5.47846 | opp_overlap 427006, overlap 427001 TTCTACACTCAAAAA GGCTCTATATGACCATAGTGGG TTTA CCCGTCATAGTCTTATAGTGCC TTTTATTTTTTGCTT TERM 571 427053 - 427006 - TfRH 88 -8.4 -4.70659 | opp_overlap 427006 427001 TTCTACACTCAAAAA GGCTCTATATGACCATAGTGGG TTTA CCCGTCATAGTCTTATAGTGCC TTTTATTTTTTGCTT SSU98_0431 428408 - 427056 - | SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase TERM 572 428583 - 428597 + GH 73 -6.4 -4.34771 | opp_overlap 428567 CACGGAGCAGGAGTT TCGTGA GCT TCGCGA TTTTGCTCAGTTTTC recX 428341 - 429222 + | recombination regulator RecX TERM 573 429514 - 429502 - g 76 -2.7 -5.252 | TATTTTCATAAAAAA TACTG GTT CAATA TCATTGCAATGATTC SSU98_0432 429298 - 429831 + | hypothetical protein TERM 574 429861 - 429847 - f 76 -4.2 -5.19275 | opp_overlap 429847 429848, overlap 429842 429848 AGTTAGAAAAGAAAA TCCTGT TTT ACAGGC TTTTTTCTTATTGTA TERM 575 429847 - 429861 + F 86 -4.2 -5.68489 | opp_overlap 429847 429842 429848, overlap 429848 AGTTAGAAAAGAAAA TCCTGT TTT ACAGGC TTTTTTCTTATTGTA TERM 576 429848 - 429860 + F 74 -7.7 -3.98653 | opp_overlap 429848 429847 429842, overlap 429847 GTTAGAAAAGAAAAT CCTGT TTT ACAGG CTTTTTTCTTATTGT TERM 577 429860 - 429848 - f 72 -7.7 -3.69938 | opp_overlap 429847 429848, overlap 429847 429842 GTTAGAAAAGAAAAT CCTGT TTT ACAGG CTTTTTTCTTATTGT TERM 578 429940 - 429958 + G 74 -9.6 -3.35869 | TTTGGAGTTGTGACT TCGCTTCC TGG GGAAGTGA TTGATAGTTTCTGGT SSU98_0433 429889 - 430206 + | hypothetical protein SSU98_0434 430282 - 430719 + | transcriptional regulator SSU98_0435 430709 - 431038 + | transcriptional regulator TERM 579 431155 - 431172 + T 100 -9.1 -5.42259 | opp_overlap 431155 TGGGTATGAAAAAAA CGCGGAC GTTA GTCTGCG TTTTTTTAGCGATGG TERM 580 431172 - 431155 - T 100 -6.9 -5.52384 | opp_overlap 431155 TGGGTATGAAAAAAA CGCGGAC GTTA GTCTGCG TTTTTTTAGCGATGG SSU98_0436 431909 - 431178 - | transcriptional regulator TERM 581 432111 - 432121 + G 75 -5.4 -4.87133 | TGAAAGAATTTTATA TTGG AGA CCAA TTTTATTTGGACGGT SSU98_0437 432095 - 433867 + | Beta-galactosidase SSU98_0438 433921 - 434406 + | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB SSU98_0439 434448 - 435347 + | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC SSU98_0440 435298 - 435903 + | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID SSU98_0441 435900 - 436151 + | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID SSU98_0442 436151 - 436552 + | phosphotransferase system, mannose/fructose-specific component IIA TERM 582 437783 - 437805 + G 86 -7 -4.98917 | CTAAAAAAATGGGGA CTCTAACTGT GTT ACAGTTTGGG TTTTCTTGTGTTTTC TERM 583 438087 - 438064 - g 70 -7.5 -3.76952 | opp_overlap 438064 TTCATTCAAGGGAAA TTTGCCAAC TACCAT GCTGGCAAA GGTTTTCATGATTTG SSU98_0443 436768 - 438135 + | galactose mutarotase-like protein TERM 584 438472 - 438460 - g 77 -4.8 -5.06505 | AACCATACAGAAAAA GAGC TCTTG GCTC TTAAAGGCATCGGTC SSU98_0444 438184 - 438537 + | superfamily II helicase TERM 585 438542 - 438517 - f 86 -5.5 -5.28942 | gap 1, opp_overlap 438517 438513, overlap 438539 CAGTTGAAAGAAAAA GGGA-TTGAGCT GAA AGCTTAAATCCC TTGCTTTTCAAGGTA TERM 586 438517 - 438542 + F 72 -7.7 -3.67622 | gap 1, opp_overlap 438517 438539, overlap 438513 CAGTTGAAAGAAAAA GGGA-TTGAGCT GAA AGCTTAAATCCC TTGCTTTTCAAGGTA TERM 587 438703 - 438683 - f 73 -6.9 -4.09292 | AATCGAATAAGCAAA GTGCAGATA ATG TATCTGAAC AAGGGTGGTACCGCG TERM 588 438730 - 438755 + F 76 -6.2 -4.54727 | gap 1, overlap 438732 CGCGGAATAACTTCG TCCCTGTCTAG CAAGT CTAGGC-GGGA TTTTCATTTGGAAAG SSU98_0445 438779 - 439168 + | lactoylglutathione lyase and related lyases SSU98_0446 439165 - 439740 + | shikimate kinase TERM 589 439765 - 439733 - f 100 -12.1 -4.48713 | opp_overlap 439738, overlap 439734 TTGAGCAAGAACAAA CGAAATAGCCAGCCC AAA GGACTGACTATTTCT AGGAGATTATATGAA TERM 590 439764 - 439734 - f 100 -15.6 -3.28505 | opp_overlap 439738, overlap 439733 TGAGCAAGAACAAAC GAAATAGCCAGCCC AAA GGACTGACTATTTC TAGGAGATTATATGA TERM 591 439930 - 439916 - g 73 -8.6 -3.72576 | opp_overlap 439915 439913 439916 CTGGTCGTTACCAAA CTTGGT TGG ACCAAG ATGTTTTTAAGCCGT TERM 592 442398 - 442372 - g 71 -3 -5.00884 | overlap 442373 442376 ATGGTCGGCAAAAAA CTCAGCAACGAA CGC TTCATTGCCAAC GCTAAACCAGAAGTC valS 439855 - 442506 + | valyl-tRNA synthetase TERM 593 442525 - 442544 + F 95 -10.7 -4.52047 | opp_overlap 442525 442524 442523 GAATACGATAAAATG CCCAGCC TAAAAT GGCTGGG TTTTGTGGTATAATA TERM 594 442544 - 442525 - f 76 -10.7 -2.58651 | opp_overlap 442525, overlap 442524 442523 GAATACGATAAAATG CCCAGCC TAAAAT GGCTGGG TTTTGTGGTATAATA TERM 595 443909 - 443896 - g 76 -2.5 -5.25154 | opp_overlap 443896 AAAAAAATAAGAAAA TAAAA GAAT TTTTA TTTGAACTTTTACTT SSU98_0448 442584 - 444476 + | hypothetical protein SSU98_0449 444547 - 445368 + | hypothetical protein TERM 596 445408 - 445392 - f 72 -3.7 -5.03994 | TTGGACATAGAAAAA CTTGAGA TTT TATCAAG CGTTACCAATCTGGA TERM 597 445561 - 445521 - f 80 -10.6 -3.39595 | gap 1, opp_overlap 445532, overlap 445526 445530 445532 GTTAAGTAGGTAGAA TACAACAAATGCCCAGCCT AAAA AGGCTGGGT-TTTGTGGTA TAATAAGGTTAGAAA TERM 598 445556 - 445526 - f 78 -9.1 -3.76568 | gap 1, opp_overlap 445532, overlap 445521 445530 445532 GTAGGTAGAATACAA CAAATGCCCAGCCT AAAA AGGCTGGGT-TTTG TGGTATAATAAGGTT TERM 599 445553 - 445530 - f 76 -6.6 -4.49353 | opp_overlap 445532, overlap 445526 445521 445532 GTAGAATACAACAAA TGCCCAGCCT AAAA AGGCTGGGTT TTGTGGTATAATAAG TERM 600 445551 - 445532 - f 91 -13.6 -2.56032 | opp_overlap 445532, overlap 445530 445526 445521 AGAATACAACAAATG CCCAGCCT AAAA AGGCTGGG TTTTGTGGTATAATA TERM 601 445532 - 445551 + F 100 -13.6 -4.52047 | opp_overlap 445532 445530 445526 445521 AGAATACAACAAATG CCCAGCCT AAAA AGGCTGGG TTTTGTGGTATAATA SSU98_0450 445595 - 446401 + | hypothetical protein TERM 602 446521 - 446548 + G 70 -5.6 -4.30441 | gap 1 ATTATGAAAAATTAA CGGGTAAGGTTGC AAA GCA-TCTTGCTCG TTTTCCCTATTATGC SSU98_0451 446496 - 448247 + | superfamily II DNA/RNA helicase SSU98_0452 448262 - 449203 + | superfamily II DNA/RNA helicase TERM 603 449230 - 449209 - f 90 -3 -5.99154 | opp_overlap 449207 449209 TATTAAATAAAAAAA TCCGAATA CTGTTC TGTTCGGA TATTTCTTTAAAAAA SSU98_0453 449307 - 450041 + | hypothetical protein SSU98_0454 450054 - 451208 + | transcriptional regulator SSU98_0455 451205 - 452281 + | hypothetical protein SSU98_0456 452365 - 453357 + | asparagine synthetase AsnA TERM 604 453375 - 453358 - f 70 -8.5 -3.37474 | opp_overlap 453358 GAGAATATTTTATAA GAGATTG GCTT CAATCTC TTTTCTTCTGCTTTC TERM 605 453358 - 453375 + F 95 -8.5 -4.86902 | opp_overlap 453358 GAGAATATTTTATAA GAGATTG GCTT CAATCTC TTTTCTTCTGCTTTC SSU98_0457 453490 - 454245 + | membrane GTPase involved in stress response SSU98_0458 454232 - 455338 + | membrane GTPase involved in stress response SSU98_0459 455356 - 455604 + | hypothetical protein TERM 606 455714 - 455768 + T 100 -12.4 -4.99035 | opp_overlap 455726 TTATATTCTGTGATA CATCTTGAAGAAGCTCTCGTTATTTA TAA TAAATGACAAGCGCATTTTCAAGGTG TTTTTATGTAGATAA SSU98_0460 456015 - 455905 - | hypothetical protein TERM 607 456144 - 456120 - H 73 -5.9 -4.40184 | GTAATTAAAGACAAA TTAAATAACTA TAT TAGTCATTCAA ACCTAAATGAGAGGG SSU98_0461 456312 - 456572 + | ATPase involved in DNA repair SSU98_0462 456553 - 457155 + | Signal peptidase I SSU98_0463 457187 - 457336 + | ribonucleases G and E TERM 608 457704 - 457689 - g 80 -4.7 -5.20216 | CACATTATGAAAAAA CCAAG GAGAAG CTTGG AGTAAAAAAACTTGT SSU98_0464 457352 - 459760 + | ribonucleases G and E TERM 609 461702 - 461690 - g 70 -5.5 -4.4727 | opp_overlap 461696 461697, overlap 461692 461695 TCAAGATTCAGAAAA CAGAC CTG GCCTG GCAGGCCCTTTCAGG SSU98_0465 460078 - 462168 + | ribonucleases G and E TERM 610 463282 - 463271 - g 74 -4.4 -5.011 | ACTGAAACAACAAAA GTGA CTAC TCAC CGTTTCACTTTGAAA SSU98_0466 462275 - 463459 + | autotransporter adhesin SSU98_0467 463456 - 463716 + | autotransporter adhesin SSU98_0468 463758 - 464603 + | sortase (surface protein transpeptidase) TERM 611 465136 - 465147 + F 78 -3.6 -5.35365 | GTCGCTTACAGTATA GTCC ATTT GGGC TTTTTATTGTATTTT murD 465267 - 466616 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase murG 466619 - 467683 + | N-acetylglucosaminyl transferase TERM 612 468033 - 468023 - gf 88 -5.4 -5.4659 | GAATAGAAAGAAAAA CAGA GAG TCTG AAATCTAAAAAGGAA SSU98_0471 467689 - 468150 + | cell division septal protein SSU98_0472 468077 - 468259 + | cell division septal protein SSU98_0473 468267 - 468773 + | cell division septal protein TERM 613 469819 - 469829 + G 73 -5.4 -4.61231 | AGTGATTGCGGCACG TCTG CGT CAGA TTTTTGACCGTGTGA TERM 614 469948 - 469967 + G 77 -5 -5.07486 | opp_overlap 469946, overlap 469939 ATTGGCCCAAGAAGT GTTTGGTG TTAA CACTAAGC TTTTTGTTCCAAATC SSU98_0474 468926 - 470305 + | Actin-like ATPase involved in cell division SSU98_0475 470331 - 471560 + | cell division protein FtsZ SSU98_0477 471670 - 471575 - | hypothetical protein TERM 615 471660 - 471683 + Gg 72 -9.6 -3.14693 | opp_overlap 471660 471658, overlap 471658 471656 TCAGTAAAGGTAATA GCTGTCACCA AATA TGTTGACAGC TCTATTGCTAATCAG TERM 616 471683 - 471660 - Gg 72 -9.6 -3.21807 | opp_overlap 471658 471656 471660, overlap 471658 TCAGTAAAGGTAATA GCTGTCACCA AATA TGTTGACAGC TCTATTGCTAATCAG SSU98_0476 471567 - 472238 + | TIM-barrel fold family protein SSU98_0478 472216 - 472818 + | hypothetical protein SSU98_0479 472823 - 473086 + | integral membrane protein TERM 617 473413 - 473423 + G 70 -5.4 -4.42653 | opp_overlap 473413 TTATCCCATTCACAA GTTC TTG GAAC TTTTCTCAATCAACT TERM 618 473811 - 473828 + G 71 -4.2 -4.82901 | ATATGGTAGAGTTCG CCTAAA TGAATT TTTAGG TTTTTCTAAGCAAGG SSU98_0480 473089 - 473880 + | S4-like domain-containing protein SSU98_0481 473889 - 474578 + | cell division initiation protein SSU98_0482 474760 - 475251 + | histone acetyltransferase HPA2-like acetyltransferase TERM 619 476187 - 476205 + G 71 -9.6 -3.01924 | opp_overlap 476187 476186, overlap 476180 GAGAAGTGGATGAAT TGGTCATC TTG GGTGACCA TGTTACAACGGACTC ileS 475259 - 478051 + | isoleucyl-tRNA synthetase TERM 620 478075 - 478092 + T 91 -6.3 -5.67967 | opp_overlap 478075 AATACATTTGTTAAA GTCTATC TAGC GATAGGC TTTTTTTGTAATACT TERM 621 478234 - 478219 - T 100 -9 -5.90231 | ATAAATAGAAAAAAA GAAGCC ATCT GGCTTC TTACAGAACGTAGAC TERM 622 478341 - 478306 - T 74 -8.4 -3.80114 | opp_overlap 478306 TAGCAAGTGATTAAA CTCTTAGAAACATTGA TATT TCAGCGTTTCTGAGAG TTTTTTATTTTCAAC TERM 623 478306 - 478341 + T 100 -10.6 -5.79595 | opp_overlap 478306 TAGCAAGTGATTAAA CTCTTAGAAACATTGA TATT TCAGCGTTTCTGAGAG TTTTTTATTTTCAAC TERM 624 478408 - 478369 - T 100 -8.8 -5.7827 | gap 1, opp_overlap 478382 478383 AACATAAAGAAAAAA GATTGAAGACAATTGTCCA AAA TGGACCTTT-TCTTCAATC TGAAAGAAGCCAGAT TERM 625 478409 - 478434 + T 76 -10.5 -2.60212 | opp_overlap 478414, overlap 478408 ACCTTTTCTTCAATC TGAAAGAAGCC AGAT GGCTTCTTACA CTTCTGCGATAATGG TERM 626 478429 - 478414 - T 78 -9 -3.66178 | opp_overlap 478409 478408 TTCTTCAATCTGAAA GAAGCC AGAT GGCTTC TTACACTTCTGCGAT SSU98_0484 478738 - 478430 - | hypothetical protein SSU98_0485 479260 - 478793 - | MutT family hydrolase TERM 627 479144 - 479123 - G 72 -6.5 -4.2704 | opp_overlap 479123, overlap 479124 TCCACCAGGAAGAAA CCAAGCTCC GTTT GGTGCTTGA ACGAGTATGATCTGT TERM 628 479288 - 479306 + r 91 -4.6 -5.80727 | opp_overlap 479288 TCATTATTGGAATGA GTTGTATA CAT TATACCAC TTTTTTATTATTTTT TERM 629 479334 - 479348 + r 100 -7.2 -5.626 | TTTCCTTGTGATAGG CTTTAC AAA GTAAAG TTTTTTTATAGGATG TERM 630 479434 - 479409 - R 71 -4.8 -4.56729 | gap 1, opp_overlap 479396 479420, overlap 479412 AGCAAAACAGTAAAA TAG-GCTACTC GTAGA GAGCAGCTCTA TTTTCTTATTTTGTC TERM 631 479420 - 479434 + r 76 -4.3 -5.12916 | opp_overlap 479412 479409, overlap 479396 AAAATAGGCTACTCG TAGAG AGCAG CTCTA TTTTCTTATTTTGTC SSU98_0486 481668 - 479440 - | ATPases with chaperone activity, ATP-binding subunit TERM 632 480357 - 480367 + g 75 -3.2 -5.10933 | CGAGGCTCACAAGCT GGGA CTG TTCC TTTTCTTTTAAATCA SSU98_0487 481892 - 482122 + | hypothetical protein TERM 633 482136 - 482149 + F 100 -8.1 -5.60689 | opp_overlap 482133 AAGAAGAAGTGAGAG GCACC TAAG GGTGC TTTTTTCTTGTGTAA SSU98_0488 482352 - 482936 + | ABC-type amino acid transport system, permease component SSU98_0489 482929 - 483663 + | putative amino acid ABC transporter, ATP-binding protein TERM 634 483685 - 483702 + F 95 -7 -5.24989 | AACAAATAAGTACGA CTCCGA TATTGT TCGGAG TTTTTTGCTATATGC SSU98_0490 483793 - 484641 + | 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase TERM 635 485070 - 485051 - f 70 -6.4 -4.10007 | opp_overlap 485052, overlap 485052 ATAATCTCCTGAAAA GCCTGATC GTGT GATCAGGT TTTTTTGTATGCAAA TERM 636 485069 - 485052 - f 76 -9.9 -3.05522 | opp_overlap 485052, overlap 485051 TAATCTCCTGAAAAG CCTGATC GTGT GATCAGG TTTTTTTGTATGCAA TERM 637 485052 - 485069 + F 100 -9.9 -5.71712 | opp_overlap 485052 485051 TAATCTCCTGAAAAG CCTGATC GTGT GATCAGG TTTTTTTGTATGCAA SSU98_0491 486091 - 486384 + | hypothetical protein SSU98_0492 486368 - 486976 + | putative signal peptidase IB SSU98_0493 486995 - 487381 + | hypothetical protein SSU98_0495 487759 - 487382 - | hypothetical protein TERM 638 488450 - 488432 - gH 93 -11.8 -3.71792 | opp_overlap 488435, overlap 488428 CGAATTGAAAATCAA CTACTTGC TAG GCAAGTAG TCTCAGAAGGATCAA SSU98_0494 487727 - 488566 + | sortase-like protein TERM 639 488870 - 488885 + G 84 -5.4 -5.26316 | opp_overlap 488870 TTATAGGGGAGAAAA TCTGGG GAAA CTCAGA TTTTTTGTCGCATAC SSU98_0496 488823 - 489359 + | putative mercuric resisitant regulatory protein TERM 640 489370 - 489348 - T 100 -10.7 -5.08824 | opp_overlap 489348 GGTTCATGCAAAAAA GACAGAGAA TAACT TTCTCTGTC TTCATACTTCATTAT TERM 641 489348 - 489370 + T 80 -10.7 -3.30956 | opp_overlap 489348 GGTTCATGCAAAAAA GACAGAGAA TAACT TTCTCTGTC TTCATACTTCATTAT SSU98_0497 489735 - 489385 - | hypothetical protein TERM 642 489506 - 489495 - G 71 -2.2 -5.08601 | TGATGGCAATAAAAA CAGG AATG CCTA CAGATAGATAGACAT TERM 643 489923 - 489911 - g 74 -7.7 -3.94634 | opp_overlap 489898 GAGCAGGTCAAAGAA CTGCT TGT AGCAG GCGTTGACCGCATTT SSU98_0498 489857 - 490786 + | collagenase-like protease TERM 644 490879 - 490868 - f 75 -7.2 -4.33274 | opp_overlap 490868 490867 GTCAGAGCACGAAAA CGCC TTTG GGCG ATTTTCTAATCTCTG SSU98_0499 491081 - 492370 + | collagenase-like protease TERM 645 492428 - 492414 - T 70 -8.6 -3.08996 | opp_overlap 492414 TACTTCGACGTAAGA GGAAAC TCC GTTTCC TTATTTCCAACTTCA TERM 646 492414 - 492428 + T 80 -8.6 -3.94 | opp_overlap 492414 TACTTCGACGTAAGA GGAAAC TCC GTTTCC TTATTTCCAACTTCA TERM 647 492597 - 492582 - T 100 -9 -5.02201 | AAAAGACTATAAAAA GGCTGA AATT TCAGCC TCAGAACGTAGATAA TERM 648 492668 - 492703 + T 100 -8.4 -5.0925 | opp_overlap 492668 TAGCAAGTCATTAAA CTCTTAGAAACATTGA TATT TCGGCGTTTCTGAGAG TTTTTAATTTTCAAC TERM 649 492770 - 492731 - T 100 -13.2 -5.7827 | gap 1, opp_overlap 492745 492764 AACATAAAGAAAAAA GATTGAAGAAAATTGTCCA AAA TGGACT-TTTTCTTCAATC TGCAAGGCTGAAATT TERM 650 492745 - 492757 + T 93 -7.7 -5.12068 | opp_overlap 492731 AGATTGAAGAAAATT GTCCA AAA TGGAC TTTTTCTTCAATCTG TERM 651 492776 - 492791 + T 100 -9 -5.18297 | overlap 492764 TTCTTCAATCTGCAA GGCTGA AATT TCAGCC TTTTGTTTGTTGTTG SSU98_0500 493109 - 492786 - | hypothetical protein SSU98_0501 493201 - 493416 + | hypothetical protein TERM 652 493423 - 493445 + T 93 -7.8 -5.14563 | opp_overlap 493422 493423 AATAAATAAATGAAG GAAGCCTA AGCAAAA TAGGCTTC TTTTTTGATAACAGG SSU98_0502 493967 - 493428 - | hypothetical protein SSU98_0503 494160 - 494909 + | hypothetical protein TERM 653 494945 - 494915 - T 91 -6.3 -5.67967 | gap 1, opp_overlap 494915, overlap 494904 ATTACCATAAAAAAA GTCCAGACAGTG CTGACCTT CA-TGTCTGGAC TTTTTCAATTGAGTT TERM 654 494915 - 494945 + T 78 -6.3 -4.75776 | gap 1, opp_overlap 494904 494915 ATTACCATAAAAAAA GTCCAGACAGTG CTGACCTT CA-TGTCTGGAC TTTTTCAATTGAGTT SSU98_0504 496371 - 494959 - | glutathione reductase TERM 655 496558 - 496532 - gH 100 -9.6 -4.62069 | opp_overlap 496531 496540, overlap 496516 496540 TTGTTATGTTAAAAA CAAAGAAAGCAA AAA TTGCTTTGTTTG GTGGTCTTGGAGTGG TERM 656 496550 - 496540 - gH 78 -5.4 -4.94811 | opp_overlap 496540 496531, overlap 496532 TTAAAAACAAAGAAA GCAA AAA TTGC TTTGTTTGGTGGTCT TERM 657 496540 - 496550 + GH 70 -5.4 -4.52345 | opp_overlap 496532 496540, overlap 496531 TTAAAAACAAAGAAA GCAA AAA TTGC TTTGTTTGGTGGTCT SSU98_0505 496495 - 497679 + | membrane-fusion protein SSU98_0506 497651 - 497983 + | peptide ABC transporter ATPase SSU98_0507 498211 - 498354 + | peptide ABC transporter ATPase TERM 658 498813 - 498824 + G 75 -5.8 -4.65168 | opp_overlap 498813, overlap 498794 TCAGTTTACAGCTAA CGAC TATA GTCG TTTTTCACGTATGAT SSU98_0508 498355 - 499602 + | peptide ABC transporter permease TERM 659 499608 - 499637 + F 100 -10.9 -5.01732 | opp_overlap 499613, overlap 499613 CTATGAATAATCTAT TGAAACGATTAGG TTTT CCTAGTCGTTTTA TTTTTTGAGCAAATT TERM 660 499613 - 499632 + F 100 -8.6 -5.42198 | opp_overlap 499613, overlap 499608 AATAATCTATTGAAA CGATTAGG TTTT CCTAGTCG TTTTATTTTTTGAGC SSU98_0509 499728 - 500141 + | coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase-like protein SSU98_0510 500143 - 500790 + | coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase-like protein TERM 661 500790 - 500775 - T 76 -7.6 -4.07103 | AAAAAAAGAAGAGAA TCAGTC CCAG GACTGA TGAGATAAAAAGGAT TERM 662 500912 - 500934 + T 87 -11.4 -3.55444 | overlap 500916 ATCTTCCTCTACGGC TGAAGCGAAC GGT GTTCGCTTTA TTTCCGACCTCCAAC TERM 663 500916 - 500930 + T 91 -10 -4.42062 | overlap 500912 TCCTCTACGGCTGAA GCGAAC GGT GTTCGC TTTATTTCCGACCTC TERM 664 500974 - 500988 + T 76 -10 -2.9914 | overlap 500966 TCTGACTGTTCTGTA GCGAAC TCT GTTCGC TCTATCTCCGACCTC TERM 665 501231 - 501209 - T 100 -15 -4.74103 | opp_overlap 501209 TTTTGAATGCAAAAA CACTCTTGGA ATT TCCAAGAGTG TTTTACGTAACGGTG TERM 666 501209 - 501231 + T 100 -15 -4.18494 | opp_overlap 501209 TTTTGAATGCAAAAA CACTCTTGGA ATT TCCAAGAGTG TTTTACGTAACGGTG TERM 667 501289 - 501301 + T 76 -7.7 -4.08767 | opp_overlap 501289 CGTCGGGAGTGAGAA GGTCT GGT AGACC TTTTCAGCCAATCGC lysS 502868 - 501378 - | lysyl-tRNA synthetase TERM 668 502976 - 502959 - R 83 -6.3 -5.23316 | opp_overlap 502954 502959 TAGGATAGGAAAAAA CAGCAGA AAAT TCTACTG TTTTGCTTTATAGCT SSU98_0512 503597 - 502971 - | fructose-2,6-bisphosphatase SSU98_0513 504082 - 503600 - | hypothetical protein SSU98_0514 504936 - 504082 - | hypothetical protein TERM 669 504783 - 504769 - G 70 -2.8 -4.93079 | opp_overlap 504769 504771 504776, overlap 504771 AACAAAATAAAGAAA GTTTTC CTT GAAATC TTTTCGAATATTTGC TERM 670 505022 - 504990 - R 100 -9.9 -5.10004 | opp_overlap 504992, overlap 504992 AAAAATAATTAAAAA GACTGCCTGTTAGAT AAA ATCCAGCAGGCAGTT TTGGTTAAAGATTGT TERM 671 504992 - 505020 + r 100 -12.5 -4.41895 | opp_overlap 504990 504992 AAATAATTAAAAAGA CTGCCTGTTAGAT AAA ATCCAGCAGGCAG TTTTGGTTAAAGATT TERM 672 505020 - 504992 - R 95 -12.5 -4.12448 | opp_overlap 504992, overlap 504990 AAATAATTAAAAAGA CTGCCTGTTAGAT AAA ATCCAGCAGGCAG TTTTGGTTAAAGATT SSU98_0515 505575 - 505027 - | hypothetical protein TERM 673 505581 - 505611 + r 85 -9.8 -3.86524 | opp_overlap 505581 505583, overlap 505583 ATGTGGGCATAAAAA GACTCCTTTGTAGA TGG TCAACAAAGGAGTG TTTATAGCAGAGTAT TERM 674 505611 - 505581 - R 100 -9.8 -4.83169 | opp_overlap 505581 505583, overlap 505583 ATGTGGGCATAAAAA GACTCCTTTGTAGA TGG TCAACAAAGGAGTG TTTATAGCAGAGTAT TERM 675 505609 - 505583 - R 93 -12.4 -4.03995 | opp_overlap 505583 505581, overlap 505581 GTGGGCATAAAAAGA CTCCTTTGTAGA TGG TCAACAAAGGAG TGTTTATAGCAGAGT TERM 676 505583 - 505609 + r 90 -12.4 -3.52113 | opp_overlap 505581 505583, overlap 505581 GTGGGCATAAAAAGA CTCCTTTGTAGA TGG TCAACAAAGGAG TGTTTATAGCAGAGT SSU98_0516 506163 - 505753 - | Lyzozyme M1 (1,4-beta-N-acetylmuramidase) SSU98_0517 506608 - 506363 - | Lyzozyme M1 (1,4-beta-N-acetylmuramidase) TERM 677 506942 - 506931 - g 71 -2.2 -5.14563 | CCTTTTATCAAAAAA GAGA ACAT TCCC TTGTGGCTACAGAGT SSU98_0518 506721 - 507140 + | preprotein translocase subunit YidC SSU98_0519 507137 - 507502 + | hypothetical protein SSU98_0520 507639 - 508853 + | cell division membrane protein TERM 678 510323 - 510335 + G 76 -7.7 -4.15841 | overlap 510326 CAACATATTATTTCA CACTC GGA GAGTG TTTCTGATTTACTGG SSU98_0521 508874 - 511570 + | phosphoenolpyruvate carboxylase TERM 679 511582 - 511599 + F 93 -6.3 -5.88471 | opp_overlap 511582 TTAATAGGCATAAAA CAACTTC TTCG GAGGTTG TTTTTTTTGCTGATA SSU98_0522 511685 - 512188 + | DNA-directed RNA polymerase specialized sigma subunit SSU98_0523 512169 - 513140 + | hypothetical protein TERM 680 513353 - 513333 - f 81 -2.5 -5.67063 | overlap 513335 GGGATGATAAAAAAA GTTATAAGC GAA GCTAATAGC CCTTGCAGAAAATGG SSU98_0524 513477 - 514691 + | elongation factor Tu TERM 681 514744 - 514765 + F 100 -9.5 -4.99638 | ACAACTTAATTGTAA CTCTCTACT TTCG GGTAGAGAG TTTTTCTGTAAGTAT tpiA 514867 - 515619 + | triosephosphate isomerase TERM 682 515629 - 515651 + T 100 -11.4 -5.36314 | opp_overlap 515629 TTCTAATAACAAAAA GCATCGGATT TTG AATTCGATGC TTTTTTGATATTTTA TERM 683 515651 - 515629 - T 100 -9.2 -5.29445 | opp_overlap 515629 TTCTAATAACAAAAA GCATCGGATT TTG AATTCGATGC TTTTTTGATATTTTA SSU98_0526 516493 - 515672 - | hypothetical protein SSU98_0527 517784 - 516471 - | HD superfamily phosphohydrolase TERM 684 517983 - 517999 + G 76 -8.1 -4.0896 | opp_overlap 517983 517978 517975 CTAAAAAGCACGATA TTTCTCT AAA AGAGAAA TTTTGGACAGGATTT SSU98_0528 517883 - 518770 + | permease SSU98_0529 518782 - 519168 + | hypothetical protein TERM 685 519273 - 519235 - T 73 -9 -3.43437 | opp_overlap 519241 519268, overlap 519241 519246 GAGAAAACTGCATAA CATCAACAGAATTTAGTC TCA GACTAAGTTCTGTTTTTG ACTAAAAATGTTGAT TERM 686 519267 - 519241 - T 82 -11 -3.42013 | opp_overlap 519241, overlap 519235 519246 ACTGCATAACATCAA CAGAATTTAGTC TCA GACTAAGTTCTG TTTTTGACTAAAAAT TERM 687 519241 - 519267 + T 100 -13.2 -4.66163 | opp_overlap 519241 519235 519246 ACTGCATAACATCAA CAGAATTTAGTC TCA GACTAAGTTCTG TTTTTGACTAAAAAT SSU98_0530 520603 - 519440 - | hypothetical protein TERM 688 520304 - 520332 + g 73 -5.3 -4.68593 | overlap 520290 TGTTCTCGAATCTGA GAGCTTAACTTCA TAA TCAAGCTGAGCTC TTTTTGCGTAGTAGA SSU98_0531 520797 - 520982 + | adenosine deaminase SSU98_0532 521037 - 521807 + | adenosine deaminase TERM 689 521847 - 521815 - T 100 -12.8 -5.52023 | opp_overlap 521815 AGTATTAAGAAAAAA GCTCTATACCGGTC GATTA GACCAGTAAAGAGC TTTTTACTGTAGATT TERM 690 521815 - 521847 + T 100 -10.6 -4.82154 | opp_overlap 521815 AGTATTAAGAAAAAA GCTCTATACCGGTC GATTA GACCAGTAAAGAGC TTTTTACTGTAGATT SSU98_0533 522633 - 521851 - | hypothetical protein SSU98_0534 523213 - 522650 - | ABC-type multidrug transport system, ATPase component TERM 691 523083 - 523061 - G 71 -3.4 -5.08011 | opp_overlap 523061 523067 AAAATCTTCAAAAAA TGTAACTGCT TCG AGCACTTTCA TATGTTCATCAAGAT SSU98_0535 523729 - 523349 - | transcriptional regulator SSU98_0536 523877 - 524581 + | DNA polymerase III, alpha subunit TERM 692 524693 - 524719 + GF 86 -8.2 -4.38203 | opp_overlap 524688, overlap 524696 AAAGGAATTATCCAT TATTCATCAAAT GGA ATTTGATGATTA TTTCTTGATTGTATG TERM 693 524696 - 524716 + GF 93 -9.9 -4.28597 | opp_overlap 524688, overlap 524693 GGAATTATCCATTAT TCATCAAAT GGA ATTTGATGA TTATTTCTTGATTGT TERM 694 526263 - 526250 - gf 81 -5.3 -5.10208 | opp_overlap 526250 TAATTTCAAGAAAAA GGATT TACT AATCC CTCTTATTCAGATTG SSU98_0537 524520 - 526988 + | DNA polymerase III, alpha subunit SSU98_0538 527073 - 527381 + | 6-phosphofructokinase SSU98_0539 527401 - 527703 + | 6-phosphofructokinase SSU98_0540 527817 - 527960 + | 6-phosphofructokinase SSU98_0541 527953 - 528075 + | 6-phosphofructokinase SSU98_0542 528105 - 528407 + | pyruvate kinase SSU98_0543 528377 - 529663 + | pyruvate kinase TERM 695 529689 - 529664 - f 83 -9.1 -4.29302 | opp_overlap 529670, overlap 529670 CGTACAGTAAAATAA TAAAAAGGTCC GCTT GGACCTTTTTG TAGTAATTAGAGAAT TERM 696 529683 - 529670 - f 100 -8.1 -5.4593 | opp_overlap 529670, overlap 529664 GTAAAATAATAAAAA GGTCC GCTT GGACC TTTTTGTAGTAATTA TERM 697 529670 - 529683 + F 95 -8.1 -4.94902 | opp_overlap 529670 529664 GTAAAATAATAAAAA GGTCC GCTT GGACC TTTTTGTAGTAATTA SSU98_0544 529824 - 530846 + | methyl-accepting chemotaxis protein SSU98_0545 530879 - 531295 + | methyl-accepting chemotaxis protein TERM 698 532948 - 532922 - g 74 -9.6 -3.28447 | overlap 532920 TGAGCTATCAGAATA CTGTGTTATTAG AGT CTAATAATACAG AGCGTCAGGTGTCTA SSU98_0546 531289 - 533247 + | methyl-accepting chemotaxis protein TERM 699 533469 - 533494 + T 89 -11.3 -3.99352 | gap 1, opp_overlap 533469 533472, overlap 533463 533472 TATTCTAGATAGAAA TAAGCAACGAGG TTC CC-CGTTGCTTA TTGTATTTATTGGTT TERM 700 533494 - 533469 - T 95 -12.7 -4.13246 | opp_overlap 533469 533463 533472, overlap 533472 TATTCTAGATAGAAA TAAGCAACGAG GTTC CCCGTTGCTTA TTGTATTTATTGGTT TERM 701 533491 - 533472 - T 86 -10 -4.18674 | opp_overlap 533469 533463 533472, overlap 533469 TCTAGATAGAAATAA GCAACGAG GTTC CCCGTTGC TTATTGTATTTATTG TERM 702 533472 - 533491 + T 81 -8.6 -4.09276 | gap 1, opp_overlap 533472 533469, overlap 533469 533463 TCTAGATAGAAATAA GCAACGAGG TTC CC-CGTTGC TTATTGTATTTATTG SSU98_0547 534681 - 533572 - | glycine/D-amino acid oxidases (deaminating) SSU98_0548 534766 - 535383 + | lysophospholipase L1 and related esterases SSU98_0549 535426 - 535968 + | Signal peptidase I TERM 703 535956 - 535975 + F 100 -8.6 -5.94214 | TTTTATTAAGACAGG GCTGGTTC AGTA GAATCAGC TTTTTTTATTGTATT TERM 704 536801 - 536774 - g 70 -7.2 -3.76775 | overlap 536759 GTGAATACATGGAAA TTCACGATAA GGAATTGG TTATCGTGAA AAAAGATAGTGTTGA TERM 705 537565 - 537583 + G 83 -9.6 -4.03234 | GCATTCTATATCGGT CGTGGTAG TGA CTACTACG TTTCTATGGAAGCCA SSU98_0550 536149 - 537969 + | D-fructose-6-phosphate amidotransferase TERM 706 537978 - 537994 + F 93 -6.5 -5.44119 | opp_overlap 537978 TGAATAAGAAGATAA GGTTCGG ATT TCGGACC TTTTTTTCAAATCAA SSU98_0551 538121 - 538762 + | amino acid (glutamine) ABC transporter, permease protein SSU98_0552 538772 - 539404 + | ABC-type polar amino acid transport system, ATPase component SSU98_0553 539419 - 540261 + | amino acid ABC transporter, amino acid-binding protein SSU98_0554 540276 - 540449 + | hypothetical protein TERM 707 540520 - 540508 - f 76 -7.7 -4.13767 | opp_overlap 540508 GGTGGGAGTTTAAAA GGTCT GGG AGACC TTTTAAAGTGGGAGA TERM 708 540508 - 540520 + F 76 -7.7 -4.13767 | opp_overlap 540508 GGTGGGAGTTTAAAA GGTCT GGG AGACC TTTTAAAGTGGGAGA TERM 709 540559 - 540538 - f 73 -9.5 -2.90714 | opp_overlap 540536, overlap 540541 TTAAAGTGGGAGATA TAAGCTGAC GGCA GTCAGCTCA CATAAATTGATGTCT TERM 710 540556 - 540541 - f 75 -9 -3.5947 | opp_overlap 540536, overlap 540538 AAGTGGGAGATATAA GCTGAC GGCA GTCAGC TCACATAAATTGATG TERM 711 540722 - 540746 + F 93 -6.5 -5.67063 | AAAAATTTGTATTTA GGCTACTAG TTCGTCC CTAGTAGTC TTTTTTTGTGCTAAA TERM 712 540828 - 540838 + F 75 -5.4 -4.82901 | AGTTGATGCGCAAGT GCAA TGG TTGC TTTTTGTGAGCCACG SSU98_0555 541701 - 541799 + | hypothetical protein TERM 713 542063 - 542095 + T 75 -7 -4.27465 | opp_overlap 542066, overlap 542060 542064 542066 GTAGCACGGGTAAAA AAACTGCCTAGTTC AATCA GAACTGGGCAGTAC TTATTTTACATTCTA TERM 714 542064 - 542094 + T 79 -10.5 -3.15395 | opp_overlap 542066, overlap 542063 542060 542066 TAGCACGGGTAAAAA AACTGCCTAGTTC AATCA GAACTGGGCAGTA CTTATTTTACATTCT TERM 715 542066 - 542092 + T 95 -13.1 -3.12253 | opp_overlap 542066, overlap 542064 542063 542060 GCACGGGTAAAAAAA CTGCCTAGTTC AATCA GAACTGGGCAG TACTTATTTTACATT TERM 716 542092 - 542066 - T 100 -10.9 -5.42259 | opp_overlap 542064 542063 542060 542066 GCACGGGTAAAAAAA CTGCCTAGTTC AATCA GAACTGGGCAG TACTTATTTTACATT SSU98_0556 542739 - 542101 - | Zn-dependent hydrolase, including glyoxylases TERM 717 542601 - 542612 + g 71 -2.2 -5.12617 | GGAGAATAGCCGAAA TTGG TTTT CCGA TTTTTTCGATAGTTA TERM 718 542730 - 542741 + g 71 -3 -5.01845 | GATTGACAGATTTGT GAAT AATC ATTC TTTTTCCTTCTTCTA TERM 719 543895 - 543880 - g 71 -6.8 -4.17425 | overlap 543869 543881 ACAACTACTGGAAAA CCCTGC AGAG GCAGGA TGATAATCGCCTGGT SSU98_0557 542802 - 545315 + | Rad3-related DNA helicase TERM 720 545318 - 545345 + F 78 -9.2 -3.62491 | opp_overlap 545323, overlap 545323 TTTTTTTGAATAAGT TGAAAGGGAGCC ACAA GGCTTCCTTTTG TTTCCAGCGTTTTTT TERM 721 545323 - 545340 + F 100 -9.1 -4.87133 | opp_overlap 545323, overlap 545318 TTGAATAAGTTGAAA GGGAGCC ACAA GGCTTCC TTTTGTTTCCAGCGT SSU98_0558 545475 - 546551 + | gamma-glutamyl kinase proA 546616 - 547854 + | gamma-glutamyl phosphate reductase TERM 722 548356 - 548370 + G 73 -7.1 -4.13246 | opp_overlap 548337 548346 GCAACGGCTATCGCA GGCTG CGGAC CAGCC TTTGTCTATCAGATG SSU98_0560 547864 - 548649 + | pyrroline-5-carboxylate reductase TERM 723 548659 - 548685 + TF 91 -6.6 -5.30155 | opp_overlap 548664, overlap 548664 AAATAGAAGACAGCA AAAAACGGGACT TTT AATCCCGTTTTG TTTTTTCCTTGATCC TERM 724 548680 - 548664 - Tf 100 -8.7 -5.27399 | opp_overlap 548659 548664 GAAGACAGCAAAAAA CGGGACT TTT AATCCCG TTTTGTTTTTTCCTT TERM 725 548664 - 548680 + TF 93 -6.5 -5.47846 | opp_overlap 548664, overlap 548659 GAAGACAGCAAAAAA CGGGACT TTT AATCCCG TTTTGTTTTTTCCTT SSU98_0562 549250 - 548672 - | transcriptional regulator SSU98_0561 549203 - 550054 + | hypothetical protein TERM 726 550097 - 550131 + Tr 86 -10.1 -4.04474 | gap 1, opp_overlap 550100, overlap 550100 ATTTCCGCTATAGAA TAATCCCCCTCG-TCT TCTA AGTTCGAGGGGGATTG TTTGTATGAGACTAT TERM 727 550100 - 550128 + Tr 85 -9.6 -4.14627 | gap 1, opp_overlap 550100, overlap 550097 TCCGCTATAGAATAA TCCCCCTCG-TCT TCTA AGTTCGAGGGGGA TTGTTTGTATGAGAC TERM 728 550128 - 550100 - TR 83 -9.6 -3.88232 | gap 1, opp_overlap 550100 550097 TCCGCTATAGAATAA TCCCCCTCG-TCT TCTA AGTTCGAGGGGGA TTGTTTGTATGAGAC SSU98_0563 550947 - 550153 - | transcriptional regulator TERM 729 550977 - 551001 + r 88 -5.7 -5.71712 | opp_overlap 550967, overlap 550967 550979 ATAGAGCTTGTTGAC TACCAGCTG TGATAAC CAGCTGGTC TTTTTTTGTATAGAC TERM 730 550979 - 550999 + r 86 -8.3 -4.50122 | opp_overlap 550967, overlap 550967 550977 AGAGCTTGTTGACTA CCAGCTG TGATAAC CAGCTGG TCTTTTTTTGTATAG SSU98_0564 551410 - 550976 - | hypothetical protein TERM 731 551859 - 551872 + G 74 -6.7 -4.33808 | overlap 551862 GCGACAGCCTTATCC GGATG GATT CATCC TTTTGAATTCATTTC SSU98_0565 551530 - 551901 + | hypothetical protein SSU98_0566 551938 - 552267 + | hypothetical protein TERM 732 552572 - 552606 + G 71 -2.1 -5.1101 | opp_overlap 552579, overlap 552581 ATTATTGATGTGGCG TAAGAAAGCGCGC ATATTTACA GCGCTCTTACTTG TTTTTTCACTGGTCA SSU98_0567 552366 - 553358 + | Cps2A SSU98_0568 553342 - 553821 + | Cps2A SSU98_0569 553839 - 554528 + | Cps2B SSU98_0570 554538 - 555215 + | Cps2C SSU98_0571 555254 - 555985 + | Cps2D TERM 733 556746 - 556764 + G 75 -6 -4.58685 | opp_overlap 556740 AAATCCAAATGCTAG GTGACCAT AGC ATCGTCAC TTTTTCCACAAATTT SSU98_0572 556010 - 557389 + | Cps2E SSU98_0573 557424 - 557807 + | Cps2F SSU98_0574 557882 - 558592 + | glycosyltransferase SSU98_0575 558596 - 559753 + | glycosyltransferase SSU98_0576 560414 - 561514 + | cell wall biosynthesis glycosyltransferase SSU98_0577 561549 - 562781 + | Cps2I SSU98_0578 562920 - 563918 + | Cps2J TERM 734 564674 - 564685 + G 75 -2.2 -5.26119 | GTTATCGTTCATTTT TAGC CTTT GCTG TTTTGTTTTTAGGCA SSU98_0579 563911 - 564915 + | cell wall biosynthesis glycosyltransferase TERM 735 565682 - 565695 + F 70 -6.7 -4.0641 | CCTGGTTTTATGGTT GGAAG TCTA CTTCC TTTCTATGCGTCCCA SSU98_0580 566758 - 567729 + | hypothetical protein SSU98_0581 567738 - 569093 + | O-antigen and teichoic acid export protein TERM 736 570317 - 570289 - g 74 -9.5 -3.28791 | opp_overlap 570289, overlap 570292 AGTGTTGGTTCAGAA GTACCCATCGCTG CTG CAGCAATGGGAGC TGAATTGATTGAAAA TERM 737 570314 - 570292 - g 95 -14.2 -2.82623 | opp_overlap 570289, overlap 570289 GTTGGTTCAGAAGTA CCCATCGCTG CTG CAGCAATGGG AGCTGAATTGATTGA SSU98_0582 569668 - 570684 + | sialic acid synthase SSU98_0583 570696 - 571829 + | UDP-N-acetylglucosamine 2-epimerase SSU98_0584 571819 - 572469 + | acetyltransferase TERM 738 572859 - 572847 - g 70 -7.7 -3.64103 | opp_overlap 572853 GAGTTATATGGGAAA GGTCA AGC TGACC ACGTTGTTAGCTTTA SSU98_0585 572475 - 573710 + | CMP-N-acetylneuraminic acid synthetase SSU98_0586 573892 - 574413 + | IS5 family transposase TERM 739 574892 - 574916 + F 100 -9.3 -4.93696 | opp_overlap 574897, overlap 574893 GAAAAGCTAACACCT AGAGAGGACGA AAT TCGTTCTCTCA TTTTTGATGTTTAAA TERM 740 574893 - 574915 + F 95 -12.8 -3.55133 | opp_overlap 574897, overlap 574892 AAAAGCTAACACCTA GAGAGGACGA AAT TCGTTCTCTC ATTTTTGATGTTTAA TERM 741 575082 - 575060 - g 70 -2.7 -5.0133 | overlap 575061 GATTTTCGTAAAAAA GTTCTCGCA TACTG TGAGAAAAC CGGCAGTATTACTGA SSU98_0587 575030 - 575380 + | transposase TERM 742 575850 - 575806 - g 77 -3.7 -5.21709 | gap 1, opp_overlap 575818, overlap 575808 GCTCACATCAAAAAA CACCTC-AGAAGAGTATTGC CAAATT GCGATACTTTTCTTGAGGCA CTTTCGTCCTGCTCT SSU98_0588 575398 - 575877 + | IS630-Spn1, transposase Orf2 SSU98_0589 576080 - 576367 + | transposase TERM 743 576409 - 576444 + F 85 -9.2 -4.1523 | opp_overlap 576414 576416, overlap 576414 AAAAATAAATGTTTC AAAAAGTCGTGATTTC TATT GAAATCATGGCTTTTC TTTGTGTATAATGAG TERM 744 576414 - 576439 + F 100 -9.1 -5.07523 | opp_overlap 576414 576416, overlap 576409 TAAATGTTTCAAAAA GTCGTGATTTC TATT GAAATCATGGC TTTTCTTTGTGTATA TERM 745 576439 - 576414 - f 71 -4.7 -4.60924 | opp_overlap 576414 576409, overlap 576416 TAAATGTTTCAAAAA GTCGTGATTTC TATT GAAATCATGGC TTTTCTTTGTGTATA SSU98_0590 576427 - 576690 + | hypothetical protein SSU98_0591 576770 - 577600 + | transposase SSU98_0592 577581 - 577976 + | transposase TERM 746 577982 - 578010 + F 91 -11.8 -4.24606 | opp_overlap 577982 ATGTAAATAGAAAAA GGTTCCAGAGTC AACAG GACTTTGGAGCC TTTTCAATATACCTT TERM 747 578010 - 577982 - f 90 -7.4 -5.20783 | opp_overlap 577982 ATGTAAATAGAAAAA GGTTCCAGAGTC AACAG GACTTTGGAGCC TTTTCAATATACCTT TERM 748 578918 - 578901 - g 91 -7.7 -4.81082 | opp_overlap 578901 AAGGAACCAAGAAAA CGACTCC AAAA GAAGTCG CTTTTATCGAACATT SSU98_0593 578216 - 579001 + | IS30 family transposase SSU98_0594 579195 - 579359 + | hypothetical protein SSU98_0595 579968 - 579621 - | hypothetical protein SSU98_0596 580348 - 580623 + | hypothetical protein SSU98_0597 580947 - 581048 + | hypothetical protein SSU98_0598 582058 - 581360 - | ATPase involved in DNA repair TERM 749 581455 - 581472 + gT 73 -2.7 -5.23644 | opp_overlap 581457 ATTGTGATAGAAATT CAGAAAA TTCC TTTCCTG TTTTTATATTTGATT SSU98_0599 583718 - 582018 - | ATPase involved in DNA repair TERM 750 582149 - 582173 + gH 100 -10.1 -4.84311 | opp_overlap 582151 582153 AATATATATTTTCAA GATATTGTGCA TTT TGCTCAATATC TTTTGTTGTATAAAA TERM 751 582858 - 582874 + gH 71 -4.5 -4.74504 | opp_overlap 582857, overlap 582859 582861 TAAGATATCAATAGC TTTTTCA ATT TGAAAAG TTTTTAAATTAAAGT TERM 752 583078 - 583104 + gH 82 -11 -3.31515 | overlap 583079 583082 TCCAAGTTTCCCTTT GTTAGAGGATAC AGT GTATCCTCTAAG TTATCAGAGATGTTT TERM 753 583079 - 583103 + gH 100 -14.5 -2.58427 | overlap 583078 583082 CCAAGTTTCCCTTTG TTAGAGGATAC AGT GTATCCTCTAA GTTATCAGAGATGTT TERM 754 583082 - 583100 + gH 83 -11.8 -2.5955 | overlap 583079 583078 AGTTTCCCTTTGTTA GAGGATAC AGT GTATCCTC TAAGTTATCAGAGAT TERM 755 583199 - 583209 + gH 73 -2.6 -5.08824 | AGTTTTTTGAAAATC TAAT ATC ATTA TTTTTTAACTCCGAG TERM 756 583984 - 583967 - g 72 -6.3 -4.38116 | gap 1 CGTAGAAAAACTAAA GGGA-ACG ATT CGTGTCCC AGGTGATAAATCAAT SSU98_0600 583935 - 585215 + | 3-phosphoshikimate 1-carboxyvinyltransferase aroK 585224 - 585715 + | shikimate kinase TERM 757 586295 - 586279 - g 88 -6.6 -5.12617 | CAAGTAGCTAAAAAA GTCAGT CTTGC ACTGAC ATTGCCAGATAACCT SSU98_0602 585706 - 586533 + | prephenate dehydratase SSU98_0603 586545 - 587870 + | transcriptional regulator TERM 758 587890 - 587903 + F 80 -6.7 -4.77036 | opp_overlap 587887 587890 TATGGTATACTAGAA GTGAC TTCG GTCAC TTTTTAGTGGTCCAA SSU98_0604 587936 - 589294 + | SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase SSU98_0605 589542 - 589360 - | hypothetical protein SSU98_0606 589854 - 590966 + | UDP-galactopyranose mutase TERM 759 591068 - 591025 - T 76 -7.8 -4.09739 | gap 1, opp_overlap 591028 591031 591040, overlap 591040 GGAATGCTCTTAAAA TGTTAATCAAAAAA-ACCAGA AAT TCTGGTTTTTTTTGATTATTA TTGAATTGCTGCCAA TERM 760 591028 - 591065 + T 100 -13.9 -3.74526 | gap 1, opp_overlap 591025 591040, overlap 591031 591040 ATGCTCTTAAAATGT TAATCAAAAAA-ACCAGA AAT TCTGGTTTTTTTTGATTA TTATTGAATTGCTGC TERM 761 591031 - 591062 + T 89 -11.2 -3.99494 | gap 1, opp_overlap 591025 591040, overlap 591028 591040 CTCTTAAAATGTTAA TCAAAAAA-ACCAGA AAT TCTGGTTTTTTTTGA TTATTATTGAATTGC TERM 762 591052 - 591040 - T 100 -7.7 -5.63103 | opp_overlap 591031 591028 591040, overlap 591025 TGTTAATCAAAAAAA CCAGA AAT TCTGG TTTTTTTTGATTATT TERM 763 591040 - 591052 + T 100 -7.7 -6.00814 | opp_overlap 591040 591025, overlap 591031 591028 TGTTAATCAAAAAAA CCAGA AAT TCTGG TTTTTTTTGATTATT SSU98_0607 591671 - 591066 - | flavoprotein SSU98_0608 592123 - 591674 - | transcriptional regulator TERM 764 591983 - 592009 + g 75 -2.2 -5.4148 | opp_overlap 591989 591993, overlap 591985 GAGTGCCTCCATCAC TCCAAACTGACA AAC TGTCAGTCCGTA TTTTTTGATTGTTTC TERM 765 592003 - 591989 - G 73 -8.6 -3.62096 | opp_overlap 591985 591983, overlap 591993 CTCCATCACTCCAAA CTGACA AAC TGTCAG TCCGTATTTTTTGAT TERM 766 592332 - 592362 + H 80 -6.3 -5.04733 | overlap 592334 GAATGTAGGTTTTTA TATCCTTTTCTTT GTGTG AAGGAAAAGGAAA TTTTATTTATAGTTA TERM 767 592469 - 592447 - g 70 -2.7 -5.0133 | overlap 592448 GATTTTCGTAAAAAA GTTCTCGCA TACTG TGAGAAAAC CGGCAGTATTACTGA SSU98_0609 592417 - 592767 + | transposase SSU98_0610 592785 - 592928 + | hypothetical protein TERM 768 593236 - 593192 - g 77 -3.7 -5.21709 | gap 1, opp_overlap 593204, overlap 593194 GCTCACATCAAAAAA CACCTC-AGAAGAGTATTGC CAAATT GCGATACTTTTCTTGAGGCA CTTTCGTCCTGCTCT SSU98_0611 592964 - 593263 + | transposase SSU98_0612 593322 - 593819 + | hypothetical protein SSU98_0613 593816 - 594997 + | aspartate aminotransferase TERM 769 595195 - 595173 - g 83 -9.2 -4.05788 | TGCCTTCAAACCAAA CTTCATCGAA AAA TTCGGTGAAG AAGCTGGTACTGAGA asnC 595012 - 596358 + | asparaginyl-tRNA synthetase TERM 770 596396 - 596416 + F 75 -9.1 -3.60971 | overlap 596399 TATTACGTCGACGTA TGAGGAAAC TCC GTTTCCTTA TTTCCAAGTTCAAAT TERM 771 596399 - 596413 + F 80 -8.6 -3.94 | overlap 596396 TACGTCGACGTATGA GGAAAC TCC GTTTCC TTATTTCCAAGTTCA TERM 772 596421 - 596454 + F 79 -8.4 -4.15453 | overlap 596424 CCGTTTCCTTATTTC CAAGTTCAAATAAT CTCATC ATTATTTGAACTCG TTTTGCCGTACCTTA TERM 773 596424 - 596451 + F 70 -8.7 -3.09831 | overlap 596421 TTTCCTTATTTCCAA GTTCAAATAAT CTCATC ATTATTTGAAC TCGTTTTGCCGTACC TERM 774 596538 - 596557 + F 100 -8.6 -4.95155 | opp_overlap 596545 ATAAATATTCACTGA CAGACTAC AAAC GTGGTCTG TTTTTCTGGTGTCAA SSU98_0615 596600 - 596857 + | hypothetical protein SSU98_0616 596847 - 597116 + | hypothetical protein TERM 775 597217 - 597231 + F 75 -8.6 -3.53563 | opp_overlap 597216 597219 TCCAGTGGAGTGAAG CAGTTC TGG GAACTG TTTCAGCCCGAGTCT TERM 776 597346 - 597360 + F 74 -10 -2.75498 | overlap 597345 597342 ACCTATACGACTGAT GCGAAC TTT GTTCGC CTTATCTCTAACCTC SSU98_0617 597510 - 598841 + | Na+-driven multidrug efflux pump SSU98_0618 598892 - 599269 + | YjgF family translation initiation inhibitor SSU98_0619 599291 - 600178 + | hypothetical protein SSU98_0620 600175 - 601149 + | hypothetical protein SSU98_0621 601146 - 602063 + | hypothetical protein TERM 777 602195 - 602212 + F 100 -7.7 -5.50925 | opp_overlap 602195 602193 TCGACGATACTAAGA CTGGTTC GAGA GGACCAG TTTTTTGTATTAGTT TERM 778 602247 - 602260 + F 78 -6.7 -4.56887 | opp_overlap 602237 TAGTATTCCTCTTCA CAGGA ATGA TCCTG TTTTATGAATTTTTC SSU98_0622 602346 - 603044 + | cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases TERM 779 603031 - 603052 + F 90 -7.4 -5.24129 | overlap 603047 TCTTAGAAAATTTGA CAGAAACT CATTGA AGTTTCTG TTTTTTATAAAAAAA TERM 780 604194 - 604180 - g 73 -10 -2.954 | opp_overlap 604175 604180, overlap 604179 TATCCACCCAGAAAT CGAAGG TGA CCTTCG TGTCTTCTCTGTAAC TERM 781 604180 - 604194 + G 76 -10 -3.25316 | opp_overlap 604180 604179, overlap 604175 TATCCACCCAGAAAT CGAAGG TGA CCTTCG TGTCTTCTCTGTAAC SSU98_0623 603236 - 604534 + | arginine deiminase SSU98_0624 604534 - 604974 + | histone acetyltransferase HPA2-like acetyltransferase TERM 782 605803 - 605776 - g 77 -5 -5.03145 | gap 1, overlap 605779 GAATTGGTGAAAAAA GC-AGAAAATGAA AAT CTCATCTTCTTGC ACTGCTTGCCTGCCT SSU98_0625 604993 - 606006 + | ornithine carbamoyltransferase TERM 783 606040 - 606060 + F 100 -18.3 -4.18506 | opp_overlap 606029 CGCATCGCAACCTCC GGGGGCTGG CAC CCAGCCCCC TTATTTTGAGGATAG TERM 784 606156 - 606166 + G 76 -6.8 -4.46212 | overlap 606148 TGTAGTAGCCTTGGG TGGC AAT GCCA TTTTATCGTCCGACC TERM 785 606452 - 606442 - g 73 -5.4 -4.68424 | opp_overlap 606440 606442 GAAGGCATTGAAAAA GATG TAG CATC TGTTGTGACCCAGGT SSU98_0626 606076 - 607071 + | carbamate kinase SSU98_0627 607414 - 608916 + | hypothetical protein TERM 786 608925 - 608967 + G 100 -8.7 -5.1417 | opp_overlap 608924, overlap 608924 CTTCTAATCGAAATT CTGGGTCAGATTTTATC ACGAATACA GATAAAATTTGGCTCAG TTTTTCCTTTTATGA SSU98_0628 608900 - 610375 + | hypothetical protein TERM 787 610413 - 610436 + F 71 -4.6 -4.77165 | opp_overlap 610413, overlap 610408 AATTACAGTTTAAAA GCTCTTAG TGAAATAT CTAAGGGC TTTTCTTATGAAGAA TERM 788 611178 - 611167 - g 73 -5.8 -4.41348 | TTGCTGGTAAAGAAA CTGG CGAA CCAG ATAACGGTTACTCCA TERM 789 611629 - 611616 - g 81 -5.3 -5.22039 | GCTAAATTGAAAAAA CCATA TTTC TATGG TAAGGCTCCAACTAA TERM 790 611937 - 611909 - g 75 -9 -3.67843 | TAAAACTCCGAAGAA CTCTAAAGCG CGTTATGTT CGCTTTAGAG GTACGCGCGTAGATG TERM 791 612474 - 612458 - g 71 -6.6 -4.08394 | ATACCTTGGTCAAAA TCCATG GTATG CATGGA CAACTAACCATTTTG SSU98_0629 610746 - 613034 + | N-acetyl-beta-hexosaminidase SSU98_0630 613025 - 615004 + | N-acetyl-beta-hexosaminidase TERM 792 615172 - 615210 + T 93 -13.4 -2.96722 | opp_overlap 615177, overlap 615177 TTTTTATCGGCTACT AAAAATCCCCCGTAATAA ATC TTATTACGGGAGATTTTC GTTTATGAGTATAAA TERM 793 615205 - 615177 - T 100 -15.5 -4.7254 | opp_overlap 615172 615177 ATCGGCTACTAAAAA TCCCCCGTAATAA ATC TTATTACGGGAGA TTTTCGTTTATGAGT TERM 794 615177 - 615205 + T 100 -13.3 -4.62475 | opp_overlap 615177, overlap 615172 ATCGGCTACTAAAAA TCCCCCGTAATAA ATC TTATTACGGGAGA TTTTCGTTTATGAGT TERM 795 615278 - 615291 + T 72 -3.9 -5.05228 | AAATTAAGTATGTTG TTTGT GAAC ACAAA TTTTTATAATTTACT SSU98_0631 615780 - 615295 - | arginine repressor SSU98_0632 616851 - 615817 - | S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) SSU98_0633 617027 - 616860 - | hypothetical protein TERM 796 617179 - 617134 - H 83 -7.1 -4.84017 | opp_overlap 617135, overlap 617167 AATTCTTGACAAAAA TTGGTCTATACCATATAAT AAAGAAAA ACAAAATGGTATAGACCAA AGAGGTGTGTTATGA TERM 797 617178 - 617167 - H 84 -4.4 -5.48028 | overlap 617134 TAAAGAAAAACAAAA TGGT ATAG ACCA AAGAGGTGTGTTATG SSU98_0634 617191 - 617895 + | 6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase TERM 798 618865 - 618884 + F 90 -10.8 -4.21787 | ACTCGAATTAGTATG CCCTCTAT GAAA ATAGAGGG TTTTAAACATTTTTT TERM 799 619596 - 619615 + F 90 -8.6 -4.5366 | ACTCAAAATAGTATG CCCTCTGT GAAA ATAGAGGG TTTTAAATTTTTTAG SSU98_0635 619806 - 620186 + | hypothetical protein SSU98_0637 620624 - 620523 - | hypothetical protein SSU98_0636 620296 - 620640 + | hypothetical protein TERM 800 620870 - 620893 + FH 73 -3.2 -5.1167 | overlap 620864 ATTAAAGAGTGAAAA GTTTAGGATG TAAT TGTTCTAAAC TTTTTATATTGCATT TERM 801 621142 - 621156 + FH 100 -7.2 -5.86465 | TGTACGATTTATCTG TAGAAC CCT GTTCTA TTTTTTTATATTGTT SSU98_0638 621204 - 622790 + | D-alanine--D-alanyl carrier protein ligase SSU98_0639 622787 - 624028 + | D-alanine export protein SSU98_0640 624071 - 624310 + | D-alanine--poly(phosphoribitol) ligase subunit 2 SSU98_0641 624303 - 625568 + | hypothetical protein TERM 802 625591 - 625623 + T 88 -4.9 -5.77677 | opp_overlap 625591 CAGTTATAATAAAAA GCAAGAAGGCTTT GAATTAG GAAGTCTCCTTGC TTTTTTGTTCTTTTA TERM 803 625623 - 625591 - T 76 -4.2 -5.20333 | opp_overlap 625591 CAGTTATAATAAAAA GCAAGAAGGCTT TGAATTAGG AAGTCTCCTTGC TTTTTTGTTCTTTTA SSU98_0642 626772 - 625657 - | putative low temperature requirement A protein SSU98_0643 627594 - 626845 - | glutathione S-transferase SSU98_0644 627801 - 627655 - | glutathione S-transferase TERM 804 627857 - 627826 - H 76 -4.5 -5.08824 | opp_overlap 627828 627833, overlap 627827 627828 CCCTTACTGAAAAAA TGGGAAATCCAAT AGGATG ATTGGATTTCCTT TGTAAAAAAATATAT TERM 805 627856 - 627827 - H 72 -8 -3.64812 | opp_overlap 627828 627833, overlap 627826 627828 CCTTACTGAAAAAAT GGGAAATCCAAT AGGATG ATTGGATTTCCT TTGTAAAAAAATATA TERM 806 627828 - 627855 + H 91 -11.5 -3.86524 | opp_overlap 627828 627827 627826, overlap 627833 CTTACTGAAAAAATG GGAAATCCAAT AGGATG ATTGGATTTCC TTTGTAAAAAAATAT TERM 807 627855 - 627828 - H 82 -11.5 -2.78405 | opp_overlap 627828 627833, overlap 627827 627826 CTTACTGAAAAAATG GGAAATCCAAT AGGATG ATTGGATTTCC TTTGTAAAAAAATAT SSU98_0645 627939 - 628655 + | 16S rRNA uridine-516 pseudouridylate synthase family protein TERM 808 629028 - 629008 - gT 82 -3.3 -5.47159 | CTTAAGAAAGAAAAA TCAACCT TATTAGG AGGTCGA ATTGAGTGGAATTTT SSU98_0646 628621 - 629148 + | glutathione peroxidase TERM 809 629181 - 629146 - T 100 -12 -4.87665 | opp_overlap 629149 629152, overlap 629149 CTTTACCTAGAAAAA TAACAAGAAGGCTGGA GTCA TCTAGCCTTCTTGTTT TAGTAACCACAGAAA TERM 810 629178 - 629149 - T 100 -13.7 -4.5448 | opp_overlap 629149 629152, overlap 629146 TACCTAGAAAAATAA CAAGAAGGCTGGA GTCA TCTAGCCTTCTTG TTTTAGTAACCACAG TERM 811 629149 - 629178 + T 100 -15.9 -4.25104 | opp_overlap 629149 629146, overlap 629152 TACCTAGAAAAATAA CAAGAAGGCTGGA GTCA TCTAGCCTTCTTG TTTTAGTAACCACAG TERM 812 629152 - 629175 + T 91 -11.8 -4.25256 | opp_overlap 629149 629146, overlap 629149 CTAGAAAAATAACAA GAAGGCTGGA GTCA TCTAGCCTTC TTGTTTTAGTAACCA SSU98_0647 630168 - 629167 - | ABC-type Fe3+-siderophore transport system, permease component SSU98_0648 631241 - 630165 - | ABC-type Fe3+-siderophore transport system, permease component TERM 813 631155 - 631133 - GR 88 -4.9 -5.56568 | opp_overlap 631136, overlap 631136 AGATGATGAAAAAAA CAAGCCAAA TATTC TTTGGCTTT GTTTTGGGATAACGA TERM 814 631152 - 631136 - GR 82 -6.6 -4.8487 | opp_overlap 631136, overlap 631133 TGATGAAAAAAACAA GCCAAA TATTC TTTGGC TTTGTTTTGGGATAA TERM 815 631136 - 631152 + gr 79 -6.6 -4.67048 | opp_overlap 631133 631136 TGATGAAAAAAACAA GCCAAA TATTC TTTGGC TTTGTTTTGGGATAA SSU98_0650 632034 - 631204 - | ABC-type Fe3+-hydroxamate transport system, periplasmic component TERM 816 631355 - 631368 + gH 80 -4.5 -5.22137 | opp_overlap 631343 TCACTTTCTTTGAGA GAGGC AGCT GCTTC TTTTGTTTTATCATT SSU98_0649 632015 - 632164 + | hypothetical protein SSU98_0651 632931 - 632146 - | ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component TERM 817 633076 - 633055 - R 100 -11.7 -5.25803 | opp_overlap 633053 AATCGTTATAAAAAA GTCCTTGTT TGTG AACAAGGAC CGTATGTTACAAATA murE 634528 - 633083 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase TERM 818 634235 - 634249 + g 71 -10 -2.57468 | opp_overlap 634237, overlap 634234 634230 634237 AAATTCCATGGCAAT CAGGCT CAT AGCCTG CTTGATGTCGTGGAC TERM 819 634324 - 634314 - G 71 -4.6 -4.72846 | TCAGACACGTAAAAA GCCA GTC CGGC CTCGATAGCTTTTTC TERM 820 634474 - 634493 + g 74 -9.2 -3.27121 | overlap 634467 CATTCTGTTTGATAT GGCGGAAG TTAG CATCCGCC TTCAATATTTCTAAT SSU98_0653 634658 - 635425 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 821 635432 - 635446 + F 100 -7.8 -5.72118 | opp_overlap 635432 AATAAGTAAATGAAA CTCGCA GCT TGCGGG TTTTTTGTATTTTTT TERM 822 635547 - 635562 + GF 79 -10.4 -3.21099 | opp_overlap 635533 635532 635541 GTGGCAAATTGCTCT GCCAGC AGTG GCTGGC TTGCTAATGGCGACG SSU98_0654 635488 - 636150 + | DNA uptake protein and related DNA-binding proteins SSU98_0655 636089 - 638371 + | membrane metal-binding protein SSU98_0656 638696 - 639352 + | hypothetical protein TERM 823 639369 - 639356 - f 95 -8.1 -4.81752 | opp_overlap 639356 AAAAATATTTAAAAA CCGAG ATTT CTCGG TTTTTTTCTTTAGCT TERM 824 639356 - 639369 + F 100 -8.1 -5.96894 | opp_overlap 639356 AAAAATATTTAAAAA CCGAG ATTT CTCGG TTTTTTTCTTTAGCT SSU98_0657 639446 - 640273 + | hypothetical protein TERM 825 640674 - 640662 - g 74 -6.3 -4.5442 | TGCTGAATTAGAAAA GAAAC CTG GTTTC TTCCAACACCTGTTC SSU98_0658 640279 - 641550 + | hypothetical protein TERM 826 641558 - 641581 + T 95 -11.1 -4.49958 | opp_overlap 641558 ATCAATAATATAAAA CCTGCAGTT CAGCGA AACTGCAGG TTTGTTTAATGGCGT TERM 827 641581 - 641558 - T 100 -11.8 -4.80656 | opp_overlap 641558 ATCAATAATATAAAA CCTGCAGTTC AGCG AAACTGCAGG TTTGTTTAATGGCGT SSU98_0659 642522 - 641587 - | hypothetical protein SSU98_0660 642598 - 642744 + | thymidylate kinase SSU98_0661 642759 - 643268 + | thymidylate kinase TERM 828 643439 - 643427 - g 74 -7.7 -3.96148 | opp_overlap 643427 643426 TTTTGTCAGGAGAAA GAAGG CAT CCTTC CTTGTCAGAAGTGTC SSU98_0662 643265 - 644149 + | DNA polymerase III subunit delta' SSU98_0663 644169 - 644486 + | DNA replication intiation control protein YabA SSU98_0664 644488 - 645351 + | methyltransferase TERM 829 645343 - 645358 + F 100 -7.6 -5.82281 | GATATATATCATGGA CTAGGT TAAG ACCTAG TTTTTTTGTATGTTT TERM 830 645840 - 645854 + G 73 -10 -3.01712 | CAATCTACAACTTCT CTGCAG GTC CTGCAG TATTGCCAAAACCAG TERM 831 646143 - 646130 - g 73 -3.8 -5.02074 | TCATGGGGTAAAAAA GCCT ATACTG AGGC TGTGAAGCTGTCTAA TERM 832 646349 - 646386 + G 76 -7.9 -4.18094 | gap 1, opp_overlap 646357 GTCATTGCTGATATG TCTTCAAACATCTTAGCG GCT CGCTATAATGTT-GAAGA TTTTGCCATGATTTA SSU98_0665 645821 - 646912 + | phosphoserine aminotransferase SSU98_0666 646912 - 647469 + | histone acetyltransferase HPA2-like acetyltransferase TERM 833 647510 - 647483 - f 83 -7 -4.82091 | opp_overlap 647488, overlap 647488 AATGAAATAAAGAAA GAAAAGGCGGCA GCTA TTCCGCCTTTTT AGGTAAAAATAAATG TERM 834 647488 - 647505 + F 81 -6.9 -4.66163 | opp_overlap 647483 647488 AATAAAGAAAGAAAA GGCGGCA GCTA TTCCGCC TTTTTAGGTAAAAAT TERM 835 647505 - 647488 - f 90 -6.9 -5.24515 | opp_overlap 647488, overlap 647483 AATAAAGAAAGAAAA GGCGGCA GCTA TTCCGCC TTTTTAGGTAAAAAT SSU98_0667 647523 - 648704 + | phosphoglycerate dehydrogenase and related dehydrogenase TERM 836 649012 - 649028 + G 78 -10.1 -3.47322 | opp_overlap 649011 TACCTATGGACAACT GGCTCAG CAA CTGGGCC TTCGTTCTGGTCAGG SSU98_0668 648707 - 649213 + | methylated DNA-protein cysteine methyltransferase SSU98_0669 649197 - 649550 + | arsenate reductase TERM 837 649533 - 649562 + T 83 -8.7 -4.35885 | opp_overlap 649530 649533 649538, overlap 649538 TATCGAACAAAATAC GAAAATCTCGGTT TATA AGCCGAGATTTTG TTTATTATAGTGCAT TERM 838 649538 - 649557 + T 100 -8.6 -5.14682 | opp_overlap 649533 649530 649538, overlap 649533 AACAAAATACGAAAA TCTCGGTT TATA AGCCGAGA TTTTGTTTATTATAG TERM 839 649557 - 649538 - T 78 -6.4 -4.59591 | opp_overlap 649538 649533, overlap 649533 649530 AACAAAATACGAAAA TCTCGGTT TATA AGCCGAGA TTTTGTTTATTATAG SSU98_0670 650466 - 649567 - | Co/Zn/Cd cation transporter TERM 840 650610 - 650564 - R 83 -9 -4.34488 | opp_overlap 650563 650568, overlap 650568 TAGAGTGATAAGAAA TAAAGGCTCAAAACCCTT GCAATAGATCT ACGGGTTTTAAGCCTTTA ATATCTGTTATCTGA TERM 841 650606 - 650568 - R 75 -5.4 -4.73677 | opp_overlap 650568 650563, overlap 650564 GTGATAAGAAATAAA GGCTCAAAACCCTT GCAATAGATCT ACGGGTTTTAAGCC TTTAATATCTGTTAT SSU98_0671 651483 - 650653 - | putative 3'-exo-deoxyribonuclease SSU98_0673 651881 - 651720 - | hypothetical protein TERM 842 652865 - 652854 - gH 78 -5.8 -4.74801 | GAAGTGCAGGAAAAA GGCT ATAA AGCC ACTAATCCAAGCCTA SSU98_0672 651639 - 653300 + | hypothetical protein TERM 843 654452 - 654467 + G 70 -7.6 -3.72893 | CGAGAATGGTCTATT CCATCA GTCG TGATGG TTTGCTACCGAAATC SSU98_0674 653461 - 654849 + | amino acid transporter TERM 844 654856 - 654877 + F 89 -5.9 -5.28826 | opp_overlap 654855 GCAAAATAATAGATT TCCCTTC TTTTATTT GAAGGGA TTTTTTGTACAATTT TERM 845 655068 - 655087 + G 70 -7.2 -3.75153 | CTGTTTTGATTTCTT TTCTGTCA GGAG TGGCAGAA TTTGGCTTGAAACAA SSU98_0675 654944 - 655633 + | integral membrane protein TERM 846 655882 - 655902 + F 73 -5.4 -4.60746 | opp_overlap 655882 ACAAATTATTAGGAA TCCCTTCG TATTT TGGAGGGA TTTTCCTGTTTTTAA SSU98_0676 656056 - 656883 + | integral membrane protein TERM 847 656896 - 656860 - T 100 -8.9 -5.30575 | opp_overlap 656864, overlap 656864 GAAAAATTGAAAAAA CAAAGACTGTCAGCT GTAGAGT AGCTAACAGTCTTTT ATGATTATAGGGAGC TERM 848 656892 - 656864 - T 100 -9.7 -5.08015 | opp_overlap 656864, overlap 656860 AATTGAAAAAACAAA GACTGTCAGCT GTAGAGT AGCTAACAGTC TTTTATGATTATAGG TERM 849 656864 - 656892 + T 90 -8.9 -4.58466 | opp_overlap 656864 656860 AATTGAAAAAACAAA GACTGTCAGCTGT AGA GTAGCTAACAGTC TTTTATGATTATAGG SSU98_0677 657776 - 656901 - | metal-dependent membrane protease SSU98_0678 657899 - 658510 + | hypothetical protein TERM 850 658603 - 658584 - T 100 -7.9 -5.42862 | ACAGGTTCAAAAAAA TCCACAG TAAAAC CTGTGGA AAATATGGTAGAATA TERM 851 658885 - 658899 + T 77 -10 -3.2614 | ACCATTACGACTGAT GCGAAC AGA GTTCGC TTCATCTCCAACCTC TERM 852 658932 - 658918 - T 78 -8.6 -3.66356 | opp_overlap 658918 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG TERM 853 658918 - 658932 + T 75 -8.6 -3.63627 | opp_overlap 658918 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG SSU98_0679 659127 - 658987 - | hypothetical protein SSU98_0680 659449 - 659258 - | hypothetical protein TERM 854 659324 - 659352 + g 73 -9.7 -3.00946 | opp_overlap 659323 659331, overlap 659323 659331 TCCCGTCTTTAAAAT GTTCAAACAGTCT GGG AGACTGTTTGAGG TCGTTTCTCGAAAAC TERM 855 659331 - 659345 + g 73 -8.6 -3.65754 | opp_overlap 659331 659323, overlap 659324 659323 TTTAAAATGTTCAAA CAGTCT GGG AGACTG TTTGAGGTCGTTTCT TERM 856 659345 - 659331 - G 73 -8.6 -3.66666 | opp_overlap 659324 659323 659331, overlap 659323 TTTAAAATGTTCAAA CAGTCT GGG AGACTG TTTGAGGTCGTTTCT TERM 857 659384 - 659407 + g 100 -11.8 -4.09511 | opp_overlap 659382 659378 GAAGAAAACGATACT GGGATTGAGT TGGC GCTCAATCCC TTTTCCAAAACTATT SSU98_0681 659651 - 659466 - | hypothetical protein SSU98_0682 659703 - 659533 - | hypothetical protein SSU98_0683 659743 - 660147 + | hypothetical protein SSU98_0684 660122 - 661411 + | putative modification enzyme of type III restriction-modification system TERM 858 662411 - 662423 + G 71 -4.8 -4.58395 | overlap 662404 ACCAAATTGGTTGAA GAGC CTTTT GCTC TTTTTGAAGAGTCAG TERM 859 663129 - 663113 - g 84 -5.1 -5.26155 | overlap 663123 ACAGAAACAGAAAAA CGACAAA AGA TTGGTCG TGGGATGCGTCTAGC SSU98_0685 661415 - 664513 + | type III restriction-modification system, restriction endonuclease subunit SSU98_0686 664770 - 665123 + | IS200 family transposase TERM 860 665151 - 665121 - T 83 -9.2 -3.97694 | opp_overlap 665129, overlap 665125 665129 AAATATATACAAGAA TAAAGAAATTATCC AGT GGATGATTTCTTCA CGAGCTTCAGCTTAA TERM 861 665147 - 665125 - T 84 -7.8 -4.55997 | opp_overlap 665129, overlap 665121 665129 ATATACAAGAATAAA GAAATTATCC AGT GGATGATTTC TTCACGAGCTTCAGC TERM 862 665270 - 665256 - T 73 -10 -2.54687 | overlap 665255 GCAAGTAGTACGAAT GCCTCT TTA AGAGGC TAGTGACGAGTCAAA TERM 863 665333 - 665312 - T 91 -11.5 -3.93262 | opp_overlap 665309 TTGAACAAAGTGAAA GCCAGCGTC TTTA GGCGCTGGC TGGTGATGTGGGCTT TERM 864 665343 - 665355 + T 75 -9.1 -3.61398 | GCTGGCTGGTGATGT GGGCT TAT AGCCC TTGTTCAAACCACCC TERM 865 665358 - 665390 + T 100 -23.7 -4.19307 | opp_overlap 665365 GGGCTTATAGCCCTT GTTCAAACCACCCGT TTG ACGGGTGGTTTGAAC TTTCTAATTTATGTG TERM 866 665383 - 665365 - T 100 -14.6 -3.53224 | opp_overlap 665358 TAGCCCTTGTTCAAA CCACCCGT TTG ACGGGTGG TTTGAACTTTCTAAT SSU98_0687 667128 - 665410 - | phosphomannomutase TERM 867 667021 - 667032 + g 85 -4.4 -5.45813 | TTCAAGATTTGTATA GAAG GCAT CTTC TTTTGTTTTTTCATC SSU98_0688 667791 - 667219 - | hypothetical protein SSU98_0689 668323 - 667775 - | phosphopantothenoylcysteine decarboxylase SSU98_0690 669017 - 668316 - | phosphopantothenate--cysteine ligase SSU98_0691 669413 - 671083 + | formate--tetrahydrofolate ligase TERM 868 671096 - 671125 + T 79 -10.9 -3.09557 | opp_overlap 671096 671103, overlap 671103 TAACAAGAATGAATA TAAAAAATCCGCT CAAA GGCGGATTTTTTG TCTATTCAGATAGTT TERM 869 671103 - 671118 + T 93 -6.8 -5.47431 | opp_overlap 671096 671103, overlap 671096 AATGAATATAAAAAA TCCGCT CAAA GGCGGA TTTTTTGTCTATTCA TERM 870 671118 - 671103 - T 91 -6.1 -5.50925 | opp_overlap 671103 671096, overlap 671096 AATGAATATAAAAAA TCCGC TCAAAG GCGGA TTTTTTGTCTATTCA SSU98_0692 672014 - 671127 - | hypothetical protein SSU98_0693 672151 - 673467 + | pyridine nucleotide-disulfide oxidoreductase TERM 871 673479 - 673494 + F 100 -8.2 -5.28176 | opp_overlap 673479 TTAATAGTGTAATAA CCGTCC AATA GGGCGG TTTTTTGTCGGTCAG SSU98_0694 673560 - 674906 + | putative HsdR SSU98_0695 674848 - 676614 + | putative HsdR SSU98_0696 676598 - 677584 + | putative HsdM SSU98_0697 677361 - 678260 + | putative HsdM SSU98_0698 678253 - 679512 + | putative HsdS SSU98_0699 679464 - 680042 + | hypothetical protein SSU98_0700 680026 - 680397 + | hypothetical protein TERM 872 680427 - 680456 + T 78 -5.7 -4.89339 | opp_overlap 680427 ATACTTTCCAGAAAA TACCCCCTTAATC ATGT GACTAGGTGGGTA TTTTTCTAAGTCGTT TERM 873 680456 - 680427 - T 70 -5.7 -4.38154 | opp_overlap 680427 ATACTTTCCAGAAAA TACCCCCTTAATC ATGT GACTAGGTGGGTA TTTTTCTAAGTCGTT SSU98_0701 681240 - 680473 - | hypothetical protein TERM 874 680945 - 680962 + g 73 -5.5 -4.60924 | overlap 680947 TGATAGGCTTGTAAT TTCTCGG GTGT CCGAGTA TTTTTAAAAAGTTTG TERM 875 680947 - 680960 + g 74 -8.1 -3.91164 | overlap 680945 ATAGGCTTGTAATTT CTCGG GTGT CCGAG TATTTTTAAAAAGTT TERM 876 681625 - 681610 - g 85 -4 -5.52096 | gap 1, opp_overlap 681611 681613, overlap 681611 681613 AAATGGAATAAAAAA CTAGCAC TTA GTGCT-G TCTTAGTCGCAAGTT SSU98_0702 681592 - 682209 + | PilT family ATPase SSU98_0703 682210 - 682719 + | sortase and related acyltransferase SSU98_0704 682709 - 683020 + | DNA alkylation repair protein SSU98_0705 683066 - 683362 + | DNA alkylation repair protein TERM 877 683423 - 683396 - g 70 -7.8 -3.67976 | opp_overlap 683415 683416 683418, overlap 683421 TCTATGAATTTGAAA CCCTTATCCA TCCAGTAC CGGATAAGGG CGGAGCCTATATCAT SSU98_0706 683371 - 683658 + | hypothetical protein TERM 878 683978 - 683996 + T 100 -11.7 -5.00895 | GGAAACGATGCCCTT GCCCACC TTTAT GGTGGGC TTTTTGTATACTAAG TERM 879 684140 - 684118 - T 75 -10 -2.84732 | opp_overlap 684115, overlap 684121 GTTAAAGGTAGGAGA TAAGATTTGC GAA GCAAATCTCA GCAATTCGTGTTTTA TERM 880 684137 - 684121 - T 78 -9.5 -3.56562 | opp_overlap 684115, overlap 684118 AAAGGTAGGAGATAA GATTTGC GAA GCAAATC TCAGCAATTCGTGTT SSU98_0707 685136 - 684360 - | pyruvate-formate lyase-activating enzyme SSU98_0708 685269 - 686012 + | sugar metabolism transcriptional regulator SSU98_0709 686025 - 686999 + | transcriptional regulator TERM 881 687005 - 687034 + F 100 -10.9 -5.24129 | opp_overlap 687004 687007 AAATTTGTAAGAGAG TACTTCAATCACT TAAA GGTGGTTGAAGTA TTTTTTATCCCAAAA TERM 882 687065 - 687052 - f 82 -6.7 -5.0538 | TTTTATCCCAAAAAA TGCAC AAAA GTGCA GAAATAAATTAAAAC SSU98_0710 687187 - 687510 + | phosphotransferase system cellobiose-specific component IIA SSU98_0711 687543 - 687848 + | phosphotransferase system cellobiose-specific component IIB TERM 883 688760 - 688770 + G 70 -5.4 -4.42748 | overlap 688768 GTCAGGTTCAGGTAT TACC TTC GGTA TTGTTTTTGCAATGC TERM 884 689013 - 689029 + G 70 -5.1 -4.4767 | CTACCATGGTCTACC CCAGCAA TCA TTTCTGG TTTTATGGTGGGTGG SSU98_0712 687855 - 689162 + | phosphotransferase system cellobiose-specific component IIC TERM 885 691016 - 691028 + G 76 -7.7 -4.16259 | TTTCTGGTCTGCAGG TTGGC ATT GCCAA TTTATCTGATTCTCT SSU98_0713 689314 - 691758 + | pyruvate-formate lyase TERM 886 692386 - 692358 - g 75 -10.4 -2.75039 | GATATATTTGAAGCA GCCTTTTCTATG CCATC CATTGAAAAGGC GGTAAATGATTTTGC SSU98_0714 691773 - 692441 + | fructose-6-phosphate aldolase TERM 887 693026 - 693003 - g 77 -6.2 -4.63526 | gap 1, opp_overlap 693003 693001, overlap 693024 AGAAGTACAAAGAAA TCATCTATTCA GCT TGA-TAGATGA TATTCTTATCAGAGA SSU98_0715 692473 - 693429 + | glycerol dehydrogenase and related enzyme gldA 693550 - 694644 + | glycerol dehydrogenase TERM 888 694705 - 694729 + F 95 -11.5 -4.54727 | opp_overlap 694704 AGGTTCGAAGTAATT GCCTTGGGAAA TTC TTTCTCAGGGC TTTTCATTTGAAAAA SSU98_0717 694813 - 695889 + | aspartate-semialdehyde dehydrogenase TERM 889 695915 - 695928 + F 95 -8.1 -5.00884 | opp_overlap 695910 695915 CAAAAGTACACAAAA GGCTG CACT CAGCC TTTTTTAGCAACAAT TERM 890 695928 - 695915 - f 88 -8.1 -4.6709 | opp_overlap 695915, overlap 695910 CAAAAGTACACAAAA GGCTG CACT CAGCC TTTTTTAGCAACAAT TERM 891 696076 - 696094 + G 71 -4.5 -4.63218 | ATTGAACATCTGTTG TCCCATC ACACA GAAGGGA TTTTATTAGCAGGAA TERM 892 696323 - 696310 - g 79 -8.1 -4.35483 | CCTTACTACAACAAA CCCTC TCAA GAGGG AATGTATCAGCACTT SSU98_0718 695962 - 696897 + | dihydrodipicolinate synthase TERM 893 696970 - 696984 + F 75 -8.6 -3.62096 | opp_overlap 696970 TCTGGGGGAGTGAAA CAGTTC GGG GAACTG TTTCAGCTGGTCACC TERM 894 696984 - 696970 - f 78 -8.6 -3.64703 | opp_overlap 696970 TCTGGGGGAGTGAAA CAGTTC GGG GAACTG TTTCAGCTGGTCACC TERM 895 697172 - 697193 + F 90 -10.9 -4.27316 | opp_overlap 697172 TTTAAGTTTACACAA GCACATCAG TTAT CTGGTGTGC TTTTCAGTTGCAAGC TERM 896 697193 - 697172 - f 75 -8.7 -3.52192 | opp_overlap 697172 TTTAAGTTTACACAA GCACATCAG TTAT CTGGTGTGC TTTTCAGTTGCAAGC SSU98_0719 697267 - 698619 + | pyridine nucleotide-disulfide family oxidoreductase TERM 897 698839 - 698818 - gf 73 -5.9 -4.43012 | opp_overlap 698795 698817 ACTCGAAGATGAAAA GGTCTTTTT GAAG AAAAAGGCC AGTTTGAGTCTTCAT SSU98_0720 698591 - 700072 + | hypothetical protein TERM 898 700139 - 700185 + F 100 -7.6 -6.32976 | gap 1, opp_overlap 700138 700139 ATTTATTTTATAAAC TCTGATAA-CAGTTGATAGAA TCATCT TTCTAGCCACTGCTTATCAGA TTTTTTTATTTTTTT TERM 899 701779 - 701769 - g 88 -6.8 -5.10497 | AAGGGATGGAAAAAA GCTG TCG CAGC AACTCAACTATTTGC glpK 700257 - 701816 + | glycerol kinase TERM 900 703355 - 703339 - g 70 -5.9 -4.35885 | ACGTAGCAGAAGAAA TTGAACA TCT TGCTCAA CTAGGTGTGAAGAAA SSU98_0722 701883 - 703721 + | alpha-glycerophosphate oxidase SSU98_0723 703845 - 704444 + | glycerol uptake facilitator TERM 901 704453 - 704480 + F 100 -10 -5.5604 | opp_overlap 704452 TTTTTAAAAAATATC CTTCTCTAATCA GCAA TGGTTAGGGAAG TTTTTTATTACTTGG SSU98_0724 704576 - 705526 + | glyoxalase family protein TERM 902 705532 - 705508 - f 93 -6.5 -5.58209 | overlap 705510 GGAAATCGAAAAAAA TCTCTCCCAAC GTT ATTAGGAGAAA TGAAGTATGGATTAT SSU98_0725 705539 - 705634 + | hypothetical protein SSU98_0726 705749 - 706141 + | hypothetical protein TERM 903 706135 - 706154 + T 71 -5 -4.68124 | opp_overlap 706129 706135, overlap 706129 AAGAATAGACAAAAA GACCTGAA CAAG TTCAAGTC TTTTATGTGTCTTAG TERM 904 706154 - 706135 - T 90 -7.2 -5.1383 | opp_overlap 706135 706129, overlap 706129 AAGAATAGACAAAAA GACCTGAA CAAG TTCAAGTC TTTTATGTGTCTTAG SSU98_0727 707956 - 706166 - | oligoendopeptidase F SSU98_0728 708087 - 708461 + | oxygen-sensitive ribonucleoside-triphosphate reductase TERM 905 708483 - 708468 - f 78 -7.6 -4.20368 | opp_overlap 708468 GTACGTTAAGAGAAA CCTAGA GAAA TCTAGG TTTTTGCTTTTATAT TERM 906 708468 - 708483 + F 93 -7.6 -5.15526 | opp_overlap 708468 GTACGTTAAGAGAAA CCTAGA GAAA TCTAGG TTTTTGCTTTTATAT TERM 907 708812 - 708823 + G 73 -5.8 -4.46212 | GTGAGCAAATTGGCG GTCC TGAA GGAC TTTTCTACTCAAACA TERM 908 709144 - 709122 - g 77 -8.4 -4.05491 | opp_overlap 709125 709128, overlap 709125 ATTGAAAAACAAAGA CATCAACCGC GTC GCAGTTGTTG GTGCTGGTTACATCG SSU98_0729 708631 - 710013 + | NAD(FAD)-dependent dehydrogenase TERM 909 710030 - 710049 + F 100 -10 -5.63103 | opp_overlap 710025 710030 TAATTGAATACAAAA GCTCAGAG ATGA CTCTGGGC TTTTTTTGCTTGCCA TERM 910 710049 - 710030 - f 84 -7.8 -4.7033 | opp_overlap 710030, overlap 710025 TAATTGAATACAAAA GCTCAGAG ATGA CTCTGGGC TTTTTTTGCTTGCCA TERM 911 711230 - 711217 - g 71 -3.1 -5.02074 | overlap 711218 711219 CGACGTCCCAAAAAA CTCTG GACA CAGAA TGCCCAAGGGGATTT TERM 912 711994 - 712006 + G 72 -7.7 -3.87112 | CACGCAGCCAAAGGT CTGGA ATT TCCAG TTGTCTTCTTGATTG SSU98_0730 710302 - 712581 + | superfamily I DNA/RNA helicase TERM 913 712756 - 712774 + F 73 -9 -3.31162 | overlap 712754 ACAAGTACTATATTT GTATTCTA GTA TAGAATAC TGTATTTACTGGTCA TERM 914 712809 - 712835 + F 100 -10.3 -5.5208 | opp_overlap 712823 TCATCGTAGGTGTAA CTCCATTTGAT AAACC ATCAGATGGAG TTTTTTCTATTGTCG SSU98_0731 713068 - 713715 + | phosphatase/phosphohexomutase TERM 915 714418 - 714405 - g 74 -6.7 -4.33274 | CGGACAGTAGCAAAA GCAGT CGAA ACTGC CAAACGATTTATTAC SSU98_0732 713712 - 714509 + | phosphomethylpyrimidine kinase SSU98_0733 714514 - 715224 + | hydroxyethylthiazole kinase SSU98_0734 715121 - 715297 + | hydroxyethylthiazole kinase SSU98_0735 715290 - 715979 + | thiamine-phosphate pyrophosphorylase SSU98_0736 716759 - 717136 + | hypothetical protein SSU98_0737 717148 - 717894 + | uridine phosphorylase SSU98_0738 717899 - 718510 + | hypothetical protein SSU98_0739 718521 - 719285 + | cobalt ABC transporter permease protein SSU98_0740 719285 - 720139 + | cobalt ABC transporter ATP-binding protein SSU98_0741 720136 - 720636 + | cobalt ABC transporter ATP-binding protein SSU98_0742 720667 - 720933 + | cobalt ABC transporter ATP-binding protein SSU98_0743 721528 - 722238 + | HAD superfamily hydrolase TERM 916 723012 - 722997 - g 74 -4 -4.96646 | overlap 722991 GTACACAAGGAAAAA TGACAA TTTA TTGCCA TATTTCTTAGGACAT SSU98_0744 722317 - 723081 + | hypothetical protein TERM 917 723188 - 723145 - f 93 -11.9 -3.91144 | opp_overlap 723145 CCTACAGCTGACAAA CGGATGATGATACGTAGTT TCTATT AACTTGGTATCATCACCCG TTTTATTGTGCTGAT TERM 918 723145 - 723188 + F 100 -9.7 -4.81814 | opp_overlap 723145 CCTACAGCTGACAAA CGGATGATGATACGTAGTT TCTATT AACTTGGTATCATCACCCG TTTTATTGTGCTGAT TERM 919 723736 - 723755 + F 91 -10 -4.40003 | AACATCATATATGTC CACCAGTC GAAA GGCTGGTG TTTCTATTTATGACA SSU98_0745 723923 - 724681 + | D-alanyl-D-alanine carboxypeptidase SSU98_0746 724770 - 724907 + | hypothetical protein SSU98_0747 724924 - 725214 + | hypothetical protein TERM 920 725211 - 725250 + T 100 -21.2 -4.59773 | opp_overlap 725211 725217, overlap 725217 ATATTACGCAGAAAA CTAAAATAGATTGGACAA GGCC TTGTCCAATCTATTTTAG TTTTTGCCAATAAGC TERM 921 725250 - 725211 - T 100 -21.2 -4.44245 | opp_overlap 725211 725217, overlap 725217 ATATTACGCAGAAAA CTAAAATAGATTGGACAA GGCC TTGTCCAATCTATTTTAG TTTTTGCCAATAAGC TERM 922 725217 - 725244 + T 100 -14.4 -4.77757 | opp_overlap 725211 725217, overlap 725211 CGCAGAAAACTAAAA TAGATTGGACAA GGCC TTGTCCAATCTA TTTTAGTTTTTGCCA TERM 923 725244 - 725217 - T 100 -14.4 -4.73108 | opp_overlap 725217 725211, overlap 725211 CGCAGAAAACTAAAA TAGATTGGACAA GGCC TTGTCCAATCTA TTTTAGTTTTTGCCA SSU98_0748 726375 - 725242 - | permease TERM 924 726457 - 726445 - RH 74 -4.1 -5.24003 | AATAAAAATTAAAAA CAACC CCG GATTG AGAAAGGTTAGAACC SSU98_0750 726852 - 726424 - | permease SSU98_0749 726480 - 726605 + | hypothetical protein SSU98_0751 727592 - 726849 - | ABC-type multidrug transport system, ATPase component TERM 925 727454 - 727432 - G 78 -10.6 -3.32819 | opp_overlap 727427 727446 727451 GAGATAGTTCCATAA CTGGCTTCGA TTA TCGAAGTCAG TAGACTGATTGTCGT uvrC 727748 - 729610 + | excinuclease ABC subunit C TERM 926 729966 - 729977 + F 91 -5.8 -5.60993 | opp_overlap 729966 AATACAGGTCTAAAA CGCT TTTA AGCG TTTTTTTCTAGGAAA TERM 927 730920 - 730910 - g 87 -5.4 -5.46657 | GAGTTCAAGAAAAAA TTGG CAA CCAA CTATGATGAGTTTGA obgE 730007 - 731320 + | GTPase ObgE TERM 928 731405 - 731431 + F 100 -13.8 -3.14647 | opp_overlap 731400 731411, overlap 731414 ACCTTACTAACTTCA CCCAAATGGTGG TAT CAACCATTTGGG TTCCGTGTCGTAACT SSU98_0754 731682 - 731858 + | hypothetical protein TERM 929 731867 - 731895 + F 93 -6.8 -5.49809 | opp_overlap 731867 GGAATAACGTCAAAA TCTGCTTGTTGT ATCAG AAAACAGGCAGA TTTTTTTAAAATTTA SSU98_0755 732222 - 733511 + | hypothetical protein TERM 930 735878 - 735853 - g 71 -6.9 -4.10453 | gap 1, opp_overlap 735871 GAAACTCCTGCAAAA CCTCAAGCAGGT AAA ACC-GCTTCAGG TAAAGCTCAATTGCC SSU98_0756 733528 - 735993 + | hypothetical protein TERM 931 736132 - 736163 + F 82 -11.7 -2.88544 | opp_overlap 736141, overlap 736141 TCGCTCCATTTCCAA CCTCCAACAGTCA CTACTC TGACTGTTGGAGC TGTGTGGGGGTGGGA SSU98_0757 736284 - 739550 + | ATP-dependent nuclease, subunit B TERM 932 743143 - 743120 - gT 85 -6 -5.09895 | GAGGCATTGAAAAAA GCCTACAAGA TAGA TCGTGTAGAC TGCCATTTGATTTTG SSU98_0758 739517 - 743200 + | ATP-dependent exoDNAse beta subunit TERM 933 743331 - 743314 - T 83 -7 -4.74219 | opp_overlap 743314, overlap 743309 ATAAATAAATTAAAA GCGAGT GGTTAA ACTCGC TTTTTCTGTTTGGTT TERM 934 743314 - 743331 + T 90 -7 -5.23644 | opp_overlap 743309 743314 ATAAATAAATTAAAA GCGAGT GGTTAA ACTCGC TTTTTCTGTTTGGTT SSU98_0759 743990 - 743322 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 935 743358 - 743378 + g 70 -2.5 -5.03314 | overlap 743363 GGTTAGATTGAGTCC GAATGGGAC AAG GTTCTCTTC TTTTTTCAAAATCCG TERM 936 744644 - 744618 - g 88 -6.6 -5.0925 | CTCCAAAATCAAAAA CAGGTACAAAAG TTA CCTTTATGCCTG ACGATACCATCTTCT SSU98_0760 744109 - 744645 + | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit SSU98_0761 744638 - 746053 + | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit TERM 937 746782 - 746770 - g 77 -6.3 -4.74103 | CCTTCAAGTGAAAAA TCTCA TTT TGAGA CAATTATTCCCCTAG SSU98_0762 746083 - 746895 + | ABC-type phosphate transport system, ATPase component SSU98_0763 747064 - 747300 + | cell division protein SSU98_0764 747272 - 747682 + | cell division protein TERM 938 747889 - 747873 - g 76 -6.6 -4.4727 | GCAACATGCAGAAAA CTTGCT ATCTG AGCAAG GAAAATTAGAACATT SSU98_0765 747703 - 748218 + | hypothetical protein TERM 939 748395 - 748383 - g 71 -3.4 -5.01535 | CGACAATTAGAAAAA CTTC GCTGG GAAG CTCAAGCAAATGGCA SSU98_0766 748200 - 748673 + | hypothetical protein SSU98_0767 748874 - 751327 + | DNA topoisomerase IV subunit A SSU98_0768 751522 - 751887 + | phosphoribosylformylglycinamidine synthase domain-containing protein TERM 940 752012 - 752027 + F 91 -6.8 -5.29716 | opp_overlap 752012 752010 752006, overlap 752006 TTTTAAAGAGTAAGA GTCTGG TTTA CCAGGC TTTTTCTTATATTCA SSU98_0769 752120 - 753142 + | branched-chain amino acid aminotransferase TERM 941 753146 - 753174 + F 93 -6.8 -5.626 | gap 1, opp_overlap 753151 753152, overlap 753148 GAAGTAGATTAATTT CAGAAG-GCTTGC ACTT GCAAGCTCTTCTC TTTTTTTGTAGAATA TERM 942 753148 - 753172 + F 91 -9.4 -4.45201 | gap 1, opp_overlap 753151 753152, overlap 753146 AGTAGATTAATTTCA GAAG-GCTTGC ACTT GCAAGCTCTTC TCTTTTTTTGTAGAA SSU98_0770 753203 - 753442 + | hypothetical protein TERM 943 753454 - 753484 + F 75 -9.2 -3.25823 | opp_overlap 753445 753456, overlap 753456 CTAAAAGACTTGTAA TAGTCGCTATTTTA TGT TAGAATAGTGACTG TTAGTGTACGGAGAG TERM 944 753456 - 753482 + F 75 -9.6 -3.19602 | opp_overlap 753445 753456, overlap 753454 AAAAGACTTGTAATA GTCGCTATTTTA TGT TAGAATAGTGAC TGTTAGTGTACGGAG rpsA 754045 - 755094 + | 30S ribosomal protein S1 TERM 945 755152 - 755142 - f 80 -6.8 -4.7657 | GAAAAAGCTGAAAAA CGTG CTC CACG TCCACGTCGTCAAAA TERM 946 755265 - 755279 + F 78 -5.7 -4.98531 | opp_overlap 755265, overlap 755259 TAATTCATATAAAAA CTTGC CTTGT GCAAG TTTTTCCTTTCCACC TERM 947 755279 - 755265 - f 78 -5.7 -5.00642 | opp_overlap 755265 755259 TAATTCATATAAAAA CTTGC CTTGT GCAAG TTTTTCCTTTCCACC TERM 948 755374 - 755389 + F 91 -6.1 -5.64304 | opp_overlap 755374, overlap 755388 GGACTAAATTGAAAA GCCTG CATTAA CAGGC TTTTTTGTTATATTA TERM 949 755389 - 755374 - f 76 -6.8 -4.37711 | opp_overlap 755374 755388 GGACTAAATTGAAAA GCCTGC ATTA ACAGGC TTTTTTGTTATATTA SSU98_0772 755423 - 756307 + | threonine aldolase SSU98_0773 756162 - 756452 + | threonine aldolase TERM 950 756464 - 756480 + F 82 -6.6 -5.04601 | opp_overlap 756464, overlap 756458 ATAATTAATAAAAAA GAAAGG GTTAG CCTTTC TTTTTAGTTTGTAAA TERM 951 756480 - 756464 - f 93 -6.6 -5.57396 | opp_overlap 756464 756458 ATAATTAATAAAAAA GAAAGG GTTAG CCTTTC TTTTTAGTTTGTAAA TERM 952 756674 - 756686 + F 72 -7.7 -3.76952 | TAAATGGAGCATACT GACCA TCC TGGTC TTTAACTTCACTGGA TERM 953 756750 - 756718 - f 78 -9.1 -3.67775 | overlap 756719 756728 ACCCTGATTGAACAA CCGGTCAATACTCCC ATG GGGAGCAATGAACGA GTATCAAATGGTTCT TERM 954 756749 - 756719 - f 77 -10.4 -2.80344 | overlap 756718 756728 CCCTGATTGAACAAC CGGTCAATACTCCC ATG GGGAGCAATGAACG AGTATCAAATGGTTC TERM 955 756740 - 756728 - f 70 -9.1 -3.05066 | overlap 756719 756718 AACAACCGGTCAATA CTCCC ATG GGGAG CAATGAACGAGTATC SSU98_0774 757120 - 757218 + | hypothetical protein TERM 956 757773 - 757751 - g 72 -9.2 -3.10622 | opp_overlap 757750 757751 757761 757762, overlap 757750 CAGCCGTAAAAGAAT CTGCGCTTTG GCT CAAAACGCAA GGTTTTGAGGTTGAT SSU98_0775 757441 - 758583 + | cysteine sulfinate desulfinase/cysteine desulfurase SSU98_0776 758585 - 759802 + | thiamine biosynthesis protein ThiI TERM 957 759831 - 759846 + F 100 -9 -5.14965 | opp_overlap 759831 TGGCATACATTTAAA TCCAGC TATT GCTGGA TTTTTTAATACGAAT TERM 958 759846 - 759831 - f 78 -9 -3.74077 | opp_overlap 759831 TGGCATACATTTAAA TCCAGC TATT GCTGGA TTTTTTAATACGAAT SSU98_0777 759924 - 760367 + | branched-chain amino acid permease SSU98_0778 760377 - 760667 + | branched-chain amino acid permease SSU98_0779 760648 - 761250 + | branched-chain amino acid permease TERM 959 761266 - 761283 + F 93 -7.7 -5.22006 | opp_overlap 761261 761266 AAAAATGATACAAAA CACTTGC ATTT GCAGGTG TTTTTGTTATAATAG TERM 960 761283 - 761266 - f 73 -5.5 -4.68446 | opp_overlap 761266, overlap 761261 AAAAATGATACAAAA CACTTGC ATTT GCAGGTG TTTTTGTTATAATAG TERM 961 761422 - 761406 - g 70 -7.3 -3.83205 | AGTCTTCACATCAAA TTCGGGT AAG ACCCAAA AATCATAGGAGGTGC rplU 761366 - 761755 + | 50S ribosomal protein L21 rpmA 761802 - 762095 + | 50S ribosomal protein L27 TERM 962 762118 - 762144 + F 95 -7.3 -5.42265 | opp_overlap 762118 AATGGCTTTACAATA GGCTTTCCGAG TTGTT TTCGGAGAGTC TTTTTTGTAATTTGA SSU98_0782 762287 - 762445 + | C-P lyase regulatory protein TERM 963 762461 - 762483 + F 100 -7.1 -5.59357 | opp_overlap 762461 762460 TCTATTTGCGAAAAC GCAAGAGTT CAGCA AATTCTTGC TTTTTTTGATATAAT SSU98_0783 762528 - 763442 + | CpsY SSU98_0784 763632 - 763901 + | prolipoprotein signal peptidase; Lsp SSU98_0785 763885 - 764616 + | YlyB SSU98_0786 764519 - 764779 + | YlyB SSU98_0787 764842 - 765198 + | hypothetical protein TERM 964 765201 - 765226 + F 78 -10.5 -2.93708 | opp_overlap 765199 765201, overlap 765206 TAAGAAAATCTAAGA GAGAGGACTGG TTAA CCAGTCTTTTC CTGTTTTTGAAAGGA TERM 965 765206 - 765221 + F 90 -9 -4.60746 | opp_overlap 765201 765199, overlap 765201 AAATCTAAGAGAGAG GACTGG TTAA CCAGTC TTTTCCTGTTTTTGA SSU98_0788 765246 - 765542 + | hypothetical protein SSU98_0789 765579 - 765890 + | hypothetical protein TERM 966 766045 - 766064 + F 100 -10.8 -5.07941 | GCCTATATTTTCATA GTCTCCTT GTAT AAGGAGAC TTTTTCTATACTTTT SSU98_0790 766089 - 766610 + | pyrimidine regulatory protein PyrR pyrB 766666 - 767589 + | aspartate carbamoyltransferase catalytic subunit TERM 967 768170 - 768153 - g 75 -5.6 -4.6971 | TAAAGGCTAAGAAAA TTCCAG CAATTT CTGGAA TTGACACACGCGCCC SSU98_0792 767837 - 768916 + | carbamoyl phosphate synthase small subunit TERM 968 768950 - 768908 - f 82 -6.4 -5.0133 | overlap 768909 768910 GATTCGTTTAAAAAA GGGCAGTAAGGCTTAACT ACTATCG AGCTAAACCTTACTGCGT CGGTCAGAGCAAGTC TERM 969 768949 - 768909 - f 80 -9.9 -3.60316 | overlap 768908 768910 ATTCGTTTAAAAAAG GGCAGTAAGGCTTAACT ACTATCG AGCTAAACCTTACTGCG TCGGTCAGAGCAAGT TERM 970 768948 - 768910 - f 90 -13.4 -2.75708 | overlap 768909 768908 TTCGTTTAAAAAAGG GCAGTAAGGCTTAACT ACTATCG AGCTAAACCTTACTGC GTCGGTCAGAGCAAG TERM 971 769072 - 769034 - f 72 -9.2 -2.63631 | CTAACTCTGACACTA GTTTAGAATTTCAATT ATTATCG AATTGAGATTCTAAAC GTCGGACTTATCTTA TERM 972 769226 - 769196 - f 73 -5.5 -4.55887 | gap 2, opp_overlap 769194 769199, overlap 769190 TGCGAAAAAGATAAA CGTCGTCTTGATGCT TGA AGCATC-AG-CGTCG TGTTTCCTATTTTCG carB 769210 - 772434 + | carbamoyl phosphate synthase large subunit TERM 973 772466 - 772492 + F 86 -6.6 -5.23316 | opp_overlap 772466 ATATAGAAGATACTA TCAGGATGAGCT TTG AATTCGTCCTGA TTTTTTGATATACTG SSU98_0794 772514 - 773275 + | SAM-dependent methyltransferase SSU98_0795 773272 - 773919 + | pyrrolidone-carboxylate peptidase SSU98_0796 773919 - 774227 + | hypothetical protein TERM 974 774439 - 774423 - g 77 -10.9 -2.74501 | opp_overlap 774421 774418, overlap 774422 ATCAACGTTGCAAAC TCACGTG CAC CACGTGA TGGTCGTTTCATCGA SSU98_0797 774291 - 774623 + | 30S ribosomal protein S16 SSU98_0798 774645 - 774887 + | RNA-binding protein TERM 975 774891 - 774906 + F 73 -6.8 -4.19238 | opp_overlap 774891 774893 GAGAAAGAATAGAAA GTCACC GTTT GGTGGC TTTTAACGTTGACAA TERM 976 774935 - 774923 - g 86 -10.5 -3.89614 | opp_overlap 774923 TTTAACGTTGACAAA GGGGC CTA GCCCC TTTTTAACATATAGA TERM 977 774923 - 774935 + G 100 -10.5 -4.64766 | opp_overlap 774923 TTTAACGTTGACAAA GGGGC CTA GCCCC TTTTTAACATATAGA SSU98_0799 774915 - 776699 + | putative ABC transporter, ATP-binding protein SSU98_0800 776708 - 778477 + | ABC-type multidrug transport system, ATPase and permease component TERM 978 778511 - 778482 - Tf 86 -4.3 -5.67283 | gap 1, opp_overlap 778486, overlap 778486 AATCCAAATAAAAAA CGAACTCCCTTGTC AGT GACA-GGGAGTTTT CTCATATACATGTTT TERM 979 778507 - 778486 - Tf 85 -9.5 -4.07772 | gap 1, opp_overlap 778486, overlap 778482 CAAATAAAAAACGAA CTCCCTTGTC AGT GACA-GGGAG TTTTCTCATATACAT TERM 980 778486 - 778507 + TF 91 -9.5 -4.51378 | gap 1, opp_overlap 778486 778482 CAAATAAAAAACGAA CTCCCTTGTC AGT GACA-GGGAG TTTTCTCATATACAT SSU98_0802 779457 - 778534 - | xylanase/chitin deacetylase SSU98_0801 779382 - 780848 + | homoserine dehydrogenase TERM 981 781402 - 781392 - g 74 -6.8 -4.30987 | overlap 781393 ATGGGGTACAAGAAA GCAG TGG CTGC TAGTGCCATTGCAAA SSU98_0803 780852 - 781712 + | homoserine kinase TERM 982 781758 - 781799 + F 93 -3.8 -5.97575 | gap 2 ACATGTTTATTTATT GGAGTTCGCCATCGCTACTG TAAG CGGTAGAAA-GG-GAACTCC TTTTTTTTGTGCATT murB 781947 - 782855 + | UDP-N-acetylenolpyruvoylglucosamine reductase SSU98_0805 782894 - 784048 + | ABC-type spermidine/putrescine transport system, ATPase component SSU98_0806 784017 - 784832 + | ABC-type spermidine/putrescine transport system, permease component I SSU98_0807 784805 - 785602 + | ABC-type spermidine/putrescine transport system, permease component II TERM 983 786286 - 786297 + G 73 -5.8 -4.56367 | overlap 786285 TGATACAAGATGCGG CAGC AATT GCTG TTTCTTTCTCAGGTG SSU98_0808 785817 - 786671 + | spermidine/putrescine-binding periplasmic protein TERM 984 788086 - 788076 - g 74 -4 -5.03145 | CAATGTTGGAAAAAA TTCT GCC AGAA GAAGTAGAACAGCAA SSU98_0809 786785 - 788323 + | chloride channel protein EriC SSU98_0810 788721 - 788320 - | transposase TERM 985 788927 - 788884 - H 77 -11.2 -2.54619 | gap 1, opp_overlap 788890, overlap 788883 788886 788889 788890 CAATAATGCACCAAC CACAAGGCCCTCACTAGGTAT ATA AT-CTTAGTGAGGGCTTTATG CTCATTCTCATTATT TERM 986 788921 - 788890 - H 78 -11 -2.72096 | gap 1, opp_overlap 788890, overlap 788889 788886 788884 788883 TGCACCAACCACAAG GCCCTCACTAGGTAT ATA AT-CTTAGTGAGGGC TTTATGCTCATTCTC TERM 987 788890 - 788921 + H 100 -13.2 -4.03093 | gap 1, opp_overlap 788890 788889 788886 788884 788883 TGCACCAACCACAAG GCCCTCACTAGGTAT ATA AT-CTTAGTGAGGGC TTTATGCTCATTCTC TERM 988 789177 - 789165 - g 80 -6.3 -4.79667 | opp_overlap 789165 AAAAGTTATGAAAAA GAAAG AAA CTTTC TCACTTCGGAAGTAT SSU98_0811 789082 - 790104 + | subtilisin-like serine protease TERM 989 793639 - 793614 - g 89 -6.1 -5.28176 | GCCACTGACAAAAAA GATGAAGGCAC TGTA ACGCCTCCACC TATAGACTCAGAAAA SSU98_0812 790101 - 793913 + | subtilisin-like serine protease TERM 990 794077 - 794105 + TF 83 -8.9 -4.3453 | opp_overlap 794078 794080, overlap 794080 AGTTTGTTATATAAA AGACCGCTTAATC ATT GATTAGGCGGTTG TTTGTGTTTGAAATT TERM 991 794104 - 794078 - Tf 82 -8 -4.52589 | opp_overlap 794077 794080, overlap 794080 GTTTGTTATATAAAA GACCGCTTAATC ATT GATTAGGCGGTT GTTTGTGTTTGAAAT TERM 992 794080 - 794102 + TF 95 -12.8 -4.27843 | opp_overlap 794080 794078, overlap 794077 TTGTTATATAAAAGA CCGCTTAATC ATT GATTAGGCGG TTGTTTGTGTTTGAA TERM 993 794102 - 794080 - Tf 88 -10.6 -3.87627 | opp_overlap 794077 794080, overlap 794078 TTGTTATATAAAAGA CCGCTTAATC ATT GATTAGGCGG TTGTTTGTGTTTGAA SSU98_0814 795021 - 794095 - | sugar kinase TERM 994 794392 - 794404 + gF 71 -4.9 -4.63486 | AGCGGAACTTTTAGC TACAA GGA TTGTA TTTTCTTGAAAAGAT SSU98_0813 794984 - 795667 + | EndoIII-related endonuclease TERM 995 795672 - 795688 + FH 90 -3.7 -5.85011 | opp_overlap 795672 AATTTGACTAAAAAA TCTTCTG TTT TGGAAGA TTTTTTTAGTTTTTA SSU98_0815 795809 - 796936 + | guanosine 5'-monophosphate oxidoreductase TERM 996 796962 - 796944 - f 73 -8.8 -3.41569 | opp_overlap 796944, overlap 796942 CTATCTAGTCAAAGA GGACTTGC AAT GCAGGTCC TTTTCTTGTTACAAT TERM 997 796944 - 796962 + F 100 -11 -4.90079 | opp_overlap 796944 796942 CTATCTAGTCAAAGA GGACTTGC AAT GCAGGTCC TTTTCTTGTTACAAT TERM 998 797573 - 797560 - g 72 -9.5 -3.0879 | overlap 797559 AATTTATGGGAAAAT GGGCC TCCC GGCCC TAGGCGGAGCTGGAG SSU98_0816 797006 - 797893 + | hypothetical protein SSU98_0817 797938 - 798351 + | Na+-driven multidrug efflux pump TERM 999 798365 - 798380 + F 86 -6.8 -5.12474 | opp_overlap 798365 AAATTAACTATGAAA GTCGGA GGCA TCCGGC TTTTTCTCTCTTGTG TERM 1000 798552 - 798566 + GF 71 -4.2 -4.72272 | opp_overlap 798552, overlap 798554 AACGTTTTAAAAAAG GGGCAA AGC TTGCAC TTTTTGATGACAAGG SSU98_0818 798449 - 798835 + | RimM protein, required for 16S rRNA processing SSU98_0819 798771 - 798968 + | RimM protein, required for 16S rRNA processing trmD 798958 - 799683 + | tRNA (guanine-N(1)-)-methyltransferase TERM 1001 799671 - 799689 + F 81 -5.3 -5.1356 | opp_overlap 799671 AATCAAAGCAGAAGA CACAGTT GATTA GACTGTG TTTTTCTTGCTAGAA SSU98_0821 799687 - 800769 + | histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase TERM 1002 800755 - 800779 + F 100 -2.9 -6.28401 | AAAATGATTGAGAAA CTAGTGGAA GCGTAAA TTCTGCTAG TTTTTTTGTTTTTTG SSU98_0822 800835 - 801269 + | sugar metabolism transcriptional regulator SSU98_0823 801256 - 801621 + | sugar metabolism transcriptional regulator SSU98_0824 801618 - 802529 + | fructose-1-phosphate kinase-like protein SSU98_0825 802526 - 804481 + | phosphotransferase system, fructose-specific IIC component TERM 1003 804494 - 804510 + F 100 -8.7 -5.18561 | opp_overlap 804494 TAATTTTGATTGAAA CCTTGCT TCT GGCAAGG TTTTTTAGCTATTTC TERM 1004 804510 - 804494 - f 72 -8 -3.65827 | opp_overlap 804494 TAATTTTGATTGAAA CCTTGC TTCTG GCAAGG TTTTTTAGCTATTTC TERM 1005 804690 - 804673 - g 85 -7.1 -4.87133 | opp_overlap 804673 ATTCCGGAAACAAAA TTGAAAG TTGA CTTTCAA TTGATTGAGCAAAAT SSU98_0826 804577 - 804951 + | hypothetical protein SSU98_0827 804953 - 805804 + | hypothetical protein SSU98_0828 805813 - 806580 + | dihydrodipicolinate reductase TERM 1006 806594 - 806614 + G 93 -11.9 -3.66666 | opp_overlap 806592, overlap 806611 GAAATTAAACAATCT GCCTTCTGA GTT TCAGGAGGC TTTGCCGATTTTAGA TERM 1007 807017 - 807005 - g 70 -5.5 -4.431 | GACTGACTTAGAAAA CCGCA CCC TACGG GCTGTAGGCATCCCG SSU98_0829 806577 - 807788 + | tRNA CCA-pyrophosphorylase SSU98_0830 807781 - 809649 + | ABC transporter ATPase TERM 1008 809784 - 809798 + G 70 -2.8 -4.9218 | overlap 809786 ATCCATGATATTGCT GACAAG CAC CTTGTA TTTTTATAGTCAGTC SSU98_0831 809650 - 809985 + | hypothetical protein TERM 1009 809965 - 809990 + F 88 -10.6 -3.88603 | overlap 809959 ATTCAATTTTTAATT TTGCTCTATC TTTTTC GATAGAGCAA TTAATTTTTATCCGT SSU98_0832 810042 - 811040 + | transcriptional regulator/sugar kinase TERM 1010 811050 - 811065 + F 86 -6.8 -5.15969 | opp_overlap 811050 AAATAATCGTTAAAA GCAGGG GAAA CTCTGC TTTTTTCAATTCCGC SSU98_0833 811450 - 811758 + | hypothetical protein TERM 1011 811762 - 811780 + F 86 -6.7 -5.16237 | opp_overlap 811762 TTTTTCAAATGAGAA CTCCGGT GCAAA ACTGGAG TTTTTTGCTAGAATT TERM 1012 812375 - 812350 - g 75 -9.1 -3.61536 | AACTCAACGGTCAAA TGATATGTTGG TAGC CCATCATATCA ACGCTATGCAGTATG thyA 811811 - 812650 + | thymidylate synthase SSU98_0835 812936 - 813421 + | dihydrofolate reductase SSU98_0836 813450 - 813623 + | hypothetical protein clpX 813645 - 814871 + | ATP-dependent protease ATP-binding subunit TERM 1013 814906 - 814881 - f 76 -3.3 -5.27709 | opp_overlap 814881 GCATAAAAAAATAAA GGGTGGAAA CTGATTGT TTTCTACCC TTATTTATGAAAGGT TERM 1014 814992 - 814978 - g 85 -9.2 -4.07687 | AGTGCTGTTTCAAAA GCCCAG TAT CCGGGC TATGACATTCCAGAA SSU98_0838 814894 - 815514 + | GTPase EngB ndk 815537 - 815950 + | nucleoside diphosphate kinase TERM 1015 815977 - 815960 - f 75 -9.9 -2.89556 | opp_overlap 815960, overlap 815962 AAATAGCAGAGCAGA CACCTAG TTTT CTAGGTG TTTTTCTTTGATAAA TERM 1016 815960 - 815977 + F 100 -9.9 -5.33405 | opp_overlap 815960 815962 AAATAGCAGAGCAGA CACCTAG TTTT CTAGGTG TTTTTCTTTGATAAA SSU98_0840 816054 - 816725 + | hypothetical protein TERM 1017 818772 - 818756 - g 70 -2.9 -5.03747 | overlap 818758 818769 AAAGCTGGTAAAAAA CGGATGA AAG CCATCGG CTCTGTCGAAGTTCC SSU98_0841 817007 - 818839 + | GTP-binding protein LepA TERM 1018 818881 - 818856 - T 91 -9.8 -4.62441 | opp_overlap 818856 CTTGATACAAAGAAA CACTCCTGCA TTTTCT TGCAAGAGTG TTTTCTCTTATTTAC TERM 1019 818856 - 818881 + T 88 -7.6 -4.84673 | opp_overlap 818856 CTTGATACAAAGAAA CACTCCTGCA TTTTCT TGCAAGAGTG TTTTCTCTTATTTAC SSU98_0842 819072 - 818905 - | 4-oxalocrotonate tautomerase TERM 1020 819172 - 819143 - H 80 -11.1 -3.22951 | opp_overlap 819142 819148, overlap 819148 GATATTTTCATAAGA TATAACAAAATAT ATTT ATATTTTGTTATA ATAATATCGCGACAA SSU98_0843 819207 - 820514 + | hypothetical protein TERM 1021 820808 - 820826 + G 88 -6.7 -5.22289 | opp_overlap 820808 GGTCTTAATATCAAA CAAGCTC AAAAC GGGCTTG TTTTTCTATTTCCTA SSU98_0844 820709 - 820882 + | hypothetical protein SSU98_0845 820899 - 821480 + | thymidine kinase TERM 1022 821654 - 821624 - f 79 -8.4 -4.07746 | opp_overlap 821624 821623 821633 821649, overlap 821619 GTGTCAAAAAGATAA TTTCTCCAAGTGTT TGT AACACTTGGTCAAA ATTCCTATTTTGACT prfA 821916 - 823010 + | peptide chain release factor 1 TERM 1023 823061 - 823090 + G 81 -9.4 -3.794 | gap 1 CAATTAGTCGCAATC GGTGAAGAGGCAG AATCC CTGTC-CTTCACC TTTCGTGGCTTAAAG SSU98_0847 823010 - 823843 + | methylase of polypeptide chain release factors SSU98_0848 823830 - 824438 + | putative translation factor (SUA5) SSU98_0849 824435 - 824866 + | hypothetical protein TERM 1024 825592 - 825602 + G 71 -6.8 -4.19735 | opp_overlap 825583, overlap 825583 825581 AAAACTCTTCGTGGG CCAC GTG GTGG TTTAATTTTGACCAA glyA 824890 - 826149 + | serine hydroxymethyltransferase TERM 1025 826205 - 826224 + G 88 -9.3 -4.28254 | opp_overlap 826205 TCCTGATGATACAGA GCTGGTC CTTTCC GACCAGC TTTTGACTGTTAGCC TERM 1026 826224 - 826205 - g 71 -9.3 -3.02471 | opp_overlap 826205 TCCTGATGATACAGA GCTGGTC CTTTCC GACCAGC TTTTGACTGTTAGCC SSU98_0851 826149 - 826889 + | hypothetical protein SSU98_0853 826961 - 826860 - | hypothetical protein SSU98_0852 826944 - 827123 + | hypothetical protein SSU98_0854 827124 - 827723 + | lytic murein transglycosylase TERM 1027 827735 - 827754 + F 90 -8.6 -4.65895 | opp_overlap 827735 TTAATACCTATCAAA CTCATCGG AAAT CTGATGAG TTTTTAACTACAGCA SSU98_0855 827884 - 828582 + | Short-chain alcohol dehydrogenase of unknown specificity SSU98_0856 828969 - 829346 + | translation initiation factor 1 TERM 1028 829365 - 829381 + F 72 -9.5 -2.71712 | overlap 829364 829367 TTCTCTAGGAGGTTA GATGTGA CAT TCACATC ATTTGAACCAACACG SSU98_0857 829368 - 829721 + | hypothetical protein TERM 1029 829750 - 829768 + T 84 -5.2 -5.30348 | opp_overlap 829750, overlap 829754 CCATTTTCTACTTAA CACGGAGC TGT GCTCTCTG TTTTTGTTCTTCAAT SSU98_0858 830689 - 829742 - | hypothetical protein TERM 1030 829858 - 829876 + g 80 -3.9 -5.27923 | gap 1, overlap 829854 829852 TTGTGAGATCTTCCA GGAACACT GGAT AG-GTTCC TTTTTTATACAATTC TERM 1031 830080 - 830116 + g 78 -5.3 -4.91977 | opp_overlap 830067 830080 830082, overlap 830067 830082 830107 AAGGAACTGCATAAA CATTTCCATGCTTTGTT TGC AAAAAAGGATGGAAATC TTTTATCTTTTCGTA TERM 1032 830082 - 830114 + g 74 -7.9 -4.05763 | opp_overlap 830067 830082 830080, overlap 830067 830080 830107 GGAACTGCATAAACA TTTCCATGCTTTGTT TGC AAAAAAGGATGGAAA TCTTTTATCTTTTCG TERM 1033 830658 - 830641 - G 82 -5.7 -4.94992 | TCAAATCCACAAAAA TGTTTAA TTCG TTAAACA TAGATATAAAGAAGC TERM 1034 830706 - 830669 - G 93 -10.7 -4.21994 | gap 1 AAACATAGATATAAA GAAGCTGGGAAAGACATC CAT GACGACTTTCCCA-CTCC CACCGTTTATTCAAG SSU98_0859 831508 - 830717 - | hypothetical protein SSU98_0860 831689 - 832699 + | GTPase subunit of restriction endonuclease TERM 1035 833159 - 833149 - g 73 -5.4 -4.71482 | AGCAAATCTGAAAAA CGAA AAA TTCG ATAGACTCATTTCCT SSU98_0861 832727 - 833398 + | GTPase subunit of restriction endonuclease SSU98_0862 833395 - 834306 + | 5-methylcytosine-specific restriction enzyme subunit McrC TERM 1036 834476 - 834511 + T 100 -8.6 -5.61596 | gap 1, opp_overlap 834476 TAGAAAACAAAAAAA CAATCAAAGTAGTAG CACTAAA CTACT-CTTTGATTG TTTTTTTATAAGACT TERM 1037 834511 - 834476 - T 100 -9.3 -6.14618 | gap 1, opp_overlap 834476 TAGAAAACAAAAAAA CAATCAAAGTAGTAGC ACTAA ACTACT-CTTTGATTG TTTTTTTATAAGACT TERM 1038 834603 - 834619 + T 81 -9.5 -3.73775 | opp_overlap 834603 TAGGCATCGGGTAAA TTAGTCC ACT GGACTAA TTTACTCCCACTCAA TERM 1039 834619 - 834603 - T 78 -9.5 -3.55761 | opp_overlap 834603 TAGGCATCGGGTAAA TTAGTCC ACT GGACTAA TTTACTCCCACTCAA TERM 1040 834649 - 834680 + T 72 -9.6 -2.7035 | gap 1, opp_overlap 834644, overlap 834646 ATTGAAACAGGTATC CTCCTA-TCCCTTGT AGG ACAAGGGACTAGAAG TAGTATATACATCAA SSU98_0863 835962 - 834652 - | phage integrase family site specific recombinase SSU98_0864 836167 - 835934 - | hypothetical protein SSU98_0865 837413 - 836145 - | putative replication initiator protein TERM 1041 837423 - 837449 + r 85 -3.8 -5.60993 | opp_overlap 837423 TGACAATGTAATTCA TGCTGTCT ATAACAAGCCC AGACAGCA TTTTTTTCTAGAGCA SSU98_0866 838081 - 837893 - | hypothetical protein SSU98_0867 838416 - 838015 - | hypothetical protein SSU98_0868 838948 - 840303 + | hypothetical protein TERM 1042 840289 - 840279 - f 74 -4 -5.23316 | TATGAGATTAAAAAA TTTC TTA GAAA ACCGAATATACTAAA TERM 1043 840335 - 840296 - f 100 -18.2 -3.41587 | opp_overlap 840298 840306, overlap 840298 840306 TCTTAGAAAACCGAA TATACTAAAAGCCAAGCA ATTG TGCTTGGCTTTTAGTATT CATCTAGTTCATGTT TERM 1044 840333 - 840298 - f 100 -20.8 -3.273 | opp_overlap 840298 840306, overlap 840296 840306 TTAGAAAACCGAATA TACTAAAAGCCAAGCA ATTG TGCTTGGCTTTTAGTA TTCATCTAGTTCATG TERM 1045 840298 - 840333 + F 100 -20.8 -3.33361 | opp_overlap 840296 840298 840306, overlap 840306 TTAGAAAACCGAATA TACTAAAAGCCAAGCA ATTG TGCTTGGCTTTTAGTA TTCATCTAGTTCATG TERM 1046 840306 - 840325 + F 100 -12.2 -4.45399 | opp_overlap 840298 840296 840306, overlap 840298 CCGAATATACTAAAA GCCAAGCA ATTG TGCTTGGC TTTTAGTATTCATCT TERM 1047 840325 - 840306 - f 100 -12.2 -4.43213 | opp_overlap 840306 840298, overlap 840298 840296 CCGAATATACTAAAA GCCAAGCA ATTG TGCTTGGC TTTTAGTATTCATCT SSU98_0869 840651 - 840809 + | hypothetical protein SSU98_0870 840781 - 841629 + | hypothetical protein SSU98_0871 841645 - 842484 + | hypothetical protein SSU98_0872 842501 - 842905 + | hypothetical protein TERM 1048 842955 - 842914 - f 95 -13.4 -3.39407 | opp_overlap 842924, overlap 842924 AAGATAATCTCACAA TAATAAAAAAGGTCTTGA TAGGTC TCAAGACCTTTTTTATGA ACACTTATTCAATTT TERM 1049 842945 - 842924 - f 100 -8.8 -5.68489 | opp_overlap 842924, overlap 842914 CACAATAATAAAAAA GGTCTTGA TAGGTC TCAAGACC TTTTTTATGAACACT TERM 1050 842924 - 842945 + F 100 -8.8 -5.24531 | opp_overlap 842924 842914 CACAATAATAAAAAA GGTCTTGA TAGGTC TCAAGACC TTTTTTATGAACACT TERM 1051 843504 - 843490 - g 73 -7.2 -4.24002 | CGCTAAATGCTAAAA CAATTG TCA CAATTG AACACTTTTTTAGAA SSU98_0873 843481 - 844083 + | hypothetical protein SSU98_0874 844073 - 844423 + | hypothetical protein SSU98_0875 844404 - 845690 + | hypothetical protein TERM 1052 845786 - 845756 - T 100 -12.8 -5.69473 | opp_overlap 845756 TAGAGTATAAAAAAA GAATTAGCTAGAAA TTT TTTCTGGCTAATTC TTTTTTTCGGGGGGA TERM 1053 845756 - 845786 + T 100 -15 -5.40072 | opp_overlap 845756 TAGAGTATAAAAAAA GAATTAGCTAGAAA TTT TTTCTGGCTAATTC TTTTTTTCGGGGGGA TERM 1054 845807 - 845831 + T 73 -5.7 -4.652 | TTCGGGGGGATTTAG GGGGGAATC AAACAAA GATTCACCC TTTTTAGACTAGTTT guaA 847452 - 845902 - | bifunctional GMP synthase/glutamine amidotransferase protein SSU98_0877 847728 - 848426 + | transcriptional regulator TERM 1055 848459 - 848484 + F 70 -3.3 -5.05116 | opp_overlap 848459, overlap 848454 AAAACATTTTTAAAA TCCGTAATC TTTCTAGT GATGACGGA TTTTCTTATTTATAA SSU98_0878 848520 - 848861 + | hypothetical protein TERM 1056 849198 - 849172 - g 71 -4.4 -4.84363 | overlap 849173 TCAAATCACCAAAAA TTCCAACTATCA TTA TGATGGCTGGAT TGCAGGGTGCTGGTA SSU98_0879 848874 - 850412 + | Signal recognition particle GTPase TERM 1057 850427 - 850392 - f 86 -8.5 -4.49531 | opp_overlap 850400, overlap 850400 AATAAAATCAAGAAA GCCAAAAAGAAGAGA AAATAA TCTCTTCTTTTTTAC TTTTTATTCGAAGAA TERM 1058 850400 - 850419 + F 93 -6.5 -5.56112 | opp_overlap 850392 850400 CAAGAAAGCCAAAAA GAAGAGA AAATAA TCTCTTC TTTTTTACTTTTTAT TERM 1059 850419 - 850400 - f 80 -6.5 -4.86939 | opp_overlap 850400, overlap 850392 CAAGAAAGCCAAAAA GAAGAGA AAATAA TCTCTTC TTTTTTACTTTTTAT TERM 1060 850680 - 850659 - g 80 -10.1 -3.68557 | overlap 850677 AAAACAGACTTCAAA CCGCTCTAG TATT CAAGAGCGG CTAAAACAGCAGCTA SSU98_0880 850606 - 851274 + | hypothetical protein SSU98_0881 851278 - 852018 + | hypothetical protein TERM 1061 852027 - 852052 + F 75 -5.6 -4.77567 | opp_overlap 852027 TTTATAAAACAAATA GTTTACATAA TTTATT TTGTGTAAAC TTTTATTATAAAAAT SSU98_0882 852083 - 852520 + | adenylylsulfate kinase-like kinase TERM 1062 852770 - 852743 - f 81 -3.6 -5.44119 | opp_overlap 852735 TGGACGTGAAAAAAA TTTTCTAGTTAT CTCG AAAACTAAAAAA TTATGAACAATTGAC TERM 1063 852856 - 852827 - f 77 -10.3 -2.92265 | opp_overlap 852827, overlap 852831 ACTGAGATAGAAGCA TAAAGTACATTCT TCAA AAAATGTACTTTA TTTTTATTTTGTACA TERM 1064 852827 - 852856 + F 100 -8.1 -5.54907 | opp_overlap 852827 852831 ACTGAGATAGAAGCA TAAAGTACATTCT TCAA AAAATGTACTTTA TTTTTATTTTGTACA TERM 1065 852852 - 852831 - f 70 -6.7 -4.13 | opp_overlap 852827, overlap 852827 AGATAGAAGCATAAA GTACATTCT TCAA AAAATGTAC TTTATTTTTATTTTG SSU98_0883 853102 - 853476 + | hypothetical protein TERM 1066 853609 - 853595 - f 71 -4.2 -4.85433 | overlap 853596 AGAGAAATTTAAAAA GCAGCT CAA AGCTGA ATTGAAAAGAACAAC SSU98_0884 853611 - 854132 + | hypothetical protein TERM 1067 854232 - 854202 - f 81 -8.5 -4.2602 | opp_overlap 854201 854207, overlap 854207 CATATTAAGAAATAA TAAAACAGGTCTA AAGTA TAGATCTGTTTTA AATTTATGTAAAAAA TERM 1068 854207 - 854227 + F 73 -6.2 -4.41177 | opp_overlap 854207 854202, overlap 854201 TAAGAAATAATAAAA CAGGTCTA AAGTA TAGATCTG TTTTAAATTTATGTA TERM 1069 854227 - 854207 - f 74 -4 -5.08731 | opp_overlap 854201 854207, overlap 854202 TAAGAAATAATAAAA CAGGTCTA AAGTA TAGATCTG TTTTAAATTTATGTA TERM 1070 854257 - 854278 + F 75 -7.4 -4.23758 | AAAAAATGGGGGTAT CTCTATGT CCGAAA ACATAGAG TTTTAGGTATCAAAT TERM 1071 854312 - 854328 + F 76 -5.9 -4.61747 | overlap 854313 CTAGAAAAATGTACT TTGGAAA AAA TTTCCAG TTTTGTCGTTATTAA TERM 1072 854361 - 854374 + F 81 -2.5 -5.69379 | overlap 854361 854367 TACATTTTTAGCTGA TTTTT CCTA AAAAA TTTTTTTGGTTATCT xerS 854490 - 855563 + | site-specific tyrosine recombinase XerS TERM 1073 855597 - 855618 + T 76 -4.4 -5.10767 | opp_overlap 855593 855597 ATGTAAATAAATTAA GGAGTAAG CGAAAA CTTACCCC TTTTTCTCTTAAATC SSU98_0886 857141 - 855633 - | phosphomannomutase TERM 1074 855865 - 855855 - G 71 -6.8 -4.19735 | opp_overlap 855855 TGGGTTAAAAGCAAA GCCT TCG AGGC TGGTTTGGCGGAGGT TERM 1075 857225 - 857208 - R 81 -4.1 -5.46698 | TTCAAAATGAAAAAA GCACAGC TTCT ACTGTAC TTTTGTAATGCTTAC SSU98_0887 858032 - 857217 - | Signal transduction histidine kinase SSU98_0888 858045 - 858161 + | hypothetical protein SSU98_0889 858828 - 858154 - | response regulator TERM 1076 858838 - 858857 + r 80 -10 -3.61062 | opp_overlap 858838 CTTCATTCTGCAAAA GCCAGGAC ACAG GTCTTGGC TTATATACTTCCATT TERM 1077 858857 - 858838 - R 76 -7.8 -4.09685 | opp_overlap 858838 CTTCATTCTGCAAAA GCCAGGAC ACAG GTCTTGGC TTATATACTTCCATT SSU98_0890 859115 - 858858 - | cytotoxic translational repressor of toxin-antitoxin stability system SSU98_0891 859212 - 859099 - | hypothetical protein SSU98_0892 859348 - 859241 - | hypothetical protein TERM 1078 859441 - 859410 - R 78 -5.3 -5.00884 | gap 1, opp_overlap 859418 ATTTCCCTGAAAAAA GCAAAAATTCTCGC ACAAG GCGA-AACTTCTGC TACCGTCCAATAATG SSU98_0893 861411 - 859462 - | peptide ABC transporter permease SSU98_0894 862164 - 861412 - | peptide ABC transporter ATPase SSU98_0895 863035 - 862301 - | putative bacteroiocin operon protein SSU98_0896 863267 - 863037 - | hypothetical protein SSU98_0897 863784 - 863209 - | hypothetical protein SSU98_0898 864687 - 863806 - | ScnF TERM 1079 864538 - 864548 + g 78 -4 -5.24416 | opp_overlap 864538 AGTCGGAGTGACAAG TGAT AGA ATCA TTTTTATTGTAGTTG TERM 1080 864646 - 864657 + g 82 -3 -5.49729 | opp_overlap 864646 ATCAACAGTGGGAAA GTTT TTGT AAAC TTTTTTTAAATGATT SSU98_0899 865089 - 864847 - | hypothetical protein TERM 1081 865339 - 865324 - R 83 -6.2 -5.14563 | GTTCTGATTAAAAAA CTTACA GCTT TGTAAG GAAAGAATAAAAGAC TERM 1082 865369 - 865352 - R 89 -7.7 -5.03961 | opp_overlap 865354 AAGGAAAGAATAAAA GACACCA TTTC TGGCGTC TTACAGTTAGTTTTA SSU98_0900 866548 - 865382 - | carbamoylphosphate synthase large subunit SSU98_0901 867171 - 866566 - | hypothetical protein SSU98_0902 867315 - 867184 - | hypothetical protein SSU98_0903 868173 - 867346 - | alpha/beta superfamily hydrolase SSU98_0904 869330 - 868287 - | hypothetical protein TERM 1083 869348 - 869333 - R 100 -9 -4.75289 | opp_overlap 869335 CAGTATAACACAAAA GACACC CGAA GGTGTC CTGTACATTATGCTT SSU98_0905 870195 - 869356 - | hypothetical protein SSU98_0906 871603 - 870269 - | tRNA (uracil-5-)-methyltransferase Gid TERM 1084 871749 - 871712 - R 76 -10.1 -2.94563 | opp_overlap 871719 871734, overlap 871714 871719 AAAATGGCTAGAAAG GACAAAACTACCTTCAT TGAA ATGAAAGTAGTTTCACC TTTTTACATAATATA TERM 1085 871747 - 871714 - R 70 -9.1 -3.0169 | opp_overlap 871719 871734, overlap 871712 871719 AATGGCTAGAAAGGA CAAAACTACCTTCAT TGAA ATGAAAGTAGTTTCA CCTTTTTACATAATA TERM 1086 871742 - 871719 - R 90 -9 -4.64846 | opp_overlap 871719 871734, overlap 871714 871712 CTAGAAAGGACAAAA CTACCTTCAT TGAA ATGAAAGTAG TTTCACCTTTTTACA SSU98_0907 872548 - 871799 - | HAD superfamily hydrolase TERM 1087 872628 - 872648 + r 88 -5.4 -5.54338 | opp_overlap 872628 AATAGAACGAAAAAA CCTACCAC ATTAA GTGATAGG TTTTTATTTTGATTG TERM 1088 872648 - 872628 - R 95 -7.6 -5.3671 | opp_overlap 872628 AATAGAACGAAAAAA CCTACCAC ATTAA GTGATAGG TTTTTATTTTGATTG SSU98_0908 873944 - 872733 - | phage integrase family site specific recombinase TERM 1089 873934 - 873975 + g 76 -9.7 -3.34089 | gap 1, overlap 873932 873935 CTTTTTGTTGCCATT TGGATTCTCACTTTCTAAAT GTT ATTTAGATAGTG-GAATCCC TATTAATTGTTCCAC TERM 1090 873935 - 873974 + g 91 -13.2 -2.59971 | gap 1, overlap 873934 873932 TTTTTGTTGCCATTT GGATTCTCACTTTCTAAAT GTT ATTTAGATAGTG-GAATCC CTATTAATTGTTCCA SSU98_0909 874182 - 873955 - | hypothetical protein TERM 1091 874460 - 874414 - R 80 -6.7 -4.86861 | gap 1, opp_overlap 874414 CAACAAATAAATAAA GTCCCACCTAGAATTATTCAAT TGTC AATGAACAAATC-AGGAGGGAC TATTTTTTATTTTTT SSU98_0910 874681 - 874460 - | Cro/CI family transcriptional regulator TERM 1092 874731 - 874751 + r 88 -7.7 -4.8048 | overlap 874732 GAACGAATCTTAGTT TTTATTCCA AAT TGGAATAAG TTTTTGATATAGACA TERM 1093 874732 - 874750 + r 75 -9 -3.47806 | overlap 874731 AACGAATCTTAGTTT TTATTCCA AAT TGGAATAA GTTTTTGATATAGAC SSU98_0911 876108 - 875011 - | NisK SSU98_0912 876775 - 876278 - | NisR SSU98_0913 877513 - 876806 - | hypothetical protein SSU98_0914 878307 - 877510 - | hypothetical protein TERM 1094 877557 - 877543 - G 78 -7.2 -4.56775 | ATCTTCCTTCAAAAA TTTGCA ATA TGCAAA GCCACTAATTACTAG TERM 1095 877863 - 877853 - G 74 -6.8 -4.258 | opp_overlap 877852 TTATTCAGTAACAAA GGGT TCA ACCC CTCTCTTCCTAAACC SSU98_0915 879007 - 878291 - | putative transport ATP-binding protein SSU98_0916 880035 - 879028 - | ABC transporter, NBP/MSD fusion protein SSU98_0917 880912 - 880037 - | ABC transporter, NBP/MSD fusion protein SSU98_0918 883256 - 881511 - | putative asparagine synthetase TERM 1096 883315 - 883267 - R 100 -7.8 -5.93252 | opp_overlap 883271 CTCAAAAATAAAAAA CAAAGTATCTCGATATTCGT AGTTCTGGA ATGAATATCGAAATACTTTA TTCAAAATTATTTAC TERM 1097 883271 - 883311 + r 73 -6.4 -4.18702 | opp_overlap 883267 AAAATAAAAAACAAA GTATCTCGATATTCGT AGTTCTGGA ATGAATATCGAAATAC TTTATTCAAAATTAT TERM 1098 883545 - 883562 + r 77 -8.5 -3.97057 | opp_overlap 883533 AAATGAAAATATTTT TCAAGAG ATAT CTCTTGA TTTAATTAAATTCTA TERM 1099 884140 - 884161 + r 100 -8.8 -5.59357 | opp_overlap 884140 CTGATAAATGATTAA CACTCAGT ATTTCA ACTGAGTG TTTTTTTAGTATAGT TERM 1100 884161 - 884140 - R 73 -8.8 -3.35467 | opp_overlap 884140 CTGATAAATGATTAA CACTCAGT ATTTCA ACTGAGTG TTTTTTTAGTATAGT SSU98_0919 886032 - 884167 - | chromosome segregation ATPase TERM 1101 884419 - 884440 + g 100 -7.3 -5.64006 | overlap 884420 ATTGACTAAGACTTC TGCCATCTT ATTT AAGGTGGCG TTTTTTTCGTTGAGT TERM 1102 884420 - 884439 + g 77 -8.6 -3.96777 | overlap 884419 TTGACTAAGACTTCT GCCATCTT ATTT AAGGTGGC GTTTTTTTCGTTGAG TERM 1103 885381 - 885393 + g 77 -4.8 -5.0133 | opp_overlap 885381 AGTCAATAGTCAAAT GCAG CTGCT CTGC TTTTTTCAAAAAGTC SSU98_0920 886384 - 886019 - | hypothetical protein SSU98_0921 886959 - 886384 - | hypothetical protein TERM 1104 886588 - 886614 + g 70 -3.7 -4.84017 | opp_overlap 886580, overlap 886591 CCATAGAGAAGACCA GGTCTCCAAAA TGTCT TTTTGGCGGTC TTTTTGTAACAAGTT TERM 1105 886936 - 886886 - G 100 -10.7 -4.67556 | gap 1, opp_overlap 886886, overlap 886889 ACAATATCCCAAAAA TCATATCGCCAGCTGACTAAAACT CTCC AGTTTT-GACAGCTAACGATAAGA TAATTTGGTGGCCCC TERM 1106 886933 - 886889 - G 81 -11 -3.25567 | gap 1, opp_overlap 886886, overlap 886886 ATATCCCAAAAATCA TATCGCCAGCTGACTAAAACT CTCC AGTTTT-GACAGCTAACGATA AGATAATTTGGTGGC TERM 1107 886960 - 886940 - G 84 -9.7 -3.79995 | CTAACGATAAGATAA TTTGGTGGC CCC GCCCCCAAA CCCCCAGTAGAAAAT SSU98_0922 887114 - 888010 + | putative Abi-alpha protein TERM 1108 888136 - 888156 + T 77 -8.3 -3.96841 | opp_overlap 888136 888140 CATTTGTACTACTAA GCAACAAGA CGC TCCTGTTGC TTCTCTTTATTCAAG TERM 1109 888156 - 888136 - T 79 -10.5 -3.21416 | opp_overlap 888136, overlap 888140 CATTTGTACTACTAA GCAACAAGA CGC TCCTGTTGC TTCTCTTTATTCAAG SSU98_0923 889349 - 888132 - | Tn916, transposase TERM 1110 889093 - 889105 + g 74 -4.1 -4.93877 | TGTTTTGCGTAAAGC TGGCA GAG TGTCA TTTTCTTTCCTACAA SSU98_0924 889634 - 889431 - | hypothetical protein TERM 1111 890089 - 890036 - R 73 -6.1 -4.44667 | gap 1, opp_overlap 890036, overlap 890032 890037 TGGTGGAATAACAAA CCTCCCTGTTCG-GGAAGCGTG GAATGGTTTAG CACGCTTCCACGAAAGGAGAGA GGATATTACTTAATT SSU98_0925 890753 - 890322 - | hypothetical protein TERM 1112 890885 - 890918 + H 71 -6.9 -3.88971 | opp_overlap 890885, overlap 890880 TGAATAGCCAAAAAA GCATATAAACAGA TTTATTTC TCTGTTTACATGC TTCTGTTATTCTATC TERM 1113 890918 - 890885 - H 100 -9.1 -5.1615 | opp_overlap 890885 890880 TGAATAGCCAAAAAA GCATATAAACAGA TTTATTTC TCTGTTTACATGC TTCTGTTATTCTATC TERM 1114 890961 - 890950 - H 73 -5.8 -4.44245 | ATATGATTTATAAAA CCAC ATTG GTGG ACGTACTTATCTATT TERM 1115 891402 - 891392 - g 71 -4.6 -4.71418 | AATATTGAAAATAAA GGGC AAC ACCC CAGCATACAAGTTCT SSU98_0926 891248 - 891601 + | Tn916, transcriptional regulator, putative TERM 1116 891623 - 891676 + TF 100 -13.5 -3.72141 | gap 1, opp_overlap 891611 891628 891640, overlap 891624 891625 891640 GAATCCATACATAAC GG-AAAGAGCCGATAAAATGAGATTG TAT TAATCTCATTTTATCGGCTCTGCGTC TTTGCGTCTGGCTCT TERM 1117 891624 - 891674 + TF 100 -15 -3.4404 | opp_overlap 891611 891628 891640, overlap 891623 891625 891640 AATCCATACATAACG GAAAGAGCCGATAAAATGAGATTG TAT TAATCTCATTTTATCGGCTCTGCG TCTTTGCGTCTGGCT TERM 1118 891625 - 891673 + TF 100 -18.5 -2.65942 | opp_overlap 891628 891640, overlap 891624 891623 891640 ATCCATACATAACGG AAAGAGCCGATAAAATGAGATTG TAT TAATCTCATTTTATCGGCTCTGC GTCTTTGCGTCTGGC TERM 1119 891670 - 891628 - Tf 100 -23.9 -3.84394 | opp_overlap 891625 891624 891623 891640, overlap 891640 CATACATAACGGAAA GAGCCGATAAAATGAGATT GTATT AATCTCATTTTATCGGCTC TGCGTCTTTGCGTCT TERM 1120 891640 - 891658 + TF 76 -6.8 -4.41548 | opp_overlap 891628 891640, overlap 891625 891624 891623 AAAGAGCCGATAAAA TGAGATTG TAT TAATCTCA TTTTATCGGCTCTGC TERM 1121 891658 - 891640 - Tf 73 -6.1 -4.43221 | opp_overlap 891640 891625 891624 891623, overlap 891628 AAAGAGCCGATAAAA TGAGATT GTATT AATCTCA TTTTATCGGCTCTGC SSU98_0928 893881 - 891947 - | translation elongation factor (GTPases) TERM 1122 892821 - 892874 + Gg 79 -8.3 -4.12532 | gap 1, overlap 892826 TTGCTCGGTTCAACA GTTGTTTGCAGCAGAGGGAGCGGATT TTC AATTCTCTCTCTCTGTGGC-AATAGC TTTGTATCTCCAAGA TERM 1123 892826 - 892870 + Gg 93 -13.7 -2.74987 | overlap 892821 CGGTTCAACAGTTGT TTGCAGCAGAGGGAGCGGATT TTC AATTCTCTCTCTCTGTGGCAA TAGCTTTGTATCTCC SSU98_0927 892774 - 892926 + | hypothetical protein TERM 1124 893500 - 893511 + gT 70 -5.8 -4.28548 | opp_overlap 893498 TGATAAAAAAGATTG TGGG AATC CCCA TTTTCCTAAGTGCAT TERM 1125 893936 - 893907 - TR 100 -16.7 -4.90296 | opp_overlap 893907 AAAAGGGCATAAAAA TCCCAGTGATAAA TACT TTTATCACTGGGA TTTTTATGCATAACC TERM 1126 893907 - 893936 + Tr 100 -16.7 -4.87665 | opp_overlap 893907 AAAAGGGCATAAAAA TCCCAGTGATAAA TACT TTTATCACTGGGA TTTTTATGCATAACC TERM 1127 894234 - 894199 - TR 100 -12.2 -4.7254 | gap 1, opp_overlap 894198 894193 894199, overlap 894201 ATTTTTTATCAAAAA GAGTACATGATTACAAA GTA TCTGTAATCATGTAC-C AATATTTGTTATTTT TERM 1128 894233 - 894201 - TR 100 -15.9 -3.98256 | opp_overlap 894199 894198 894193, overlap 894199 TTTTTATCAAAAAGA GTACATGATTACAAA GTA TCTGTAATCATGTAC CAATATTTGTTATTT SSU98_0929 895175 - 894243 - | Tn916 hypothetical protein SSU98_0930 896173 - 895172 - | hypothetical protein SSU98_0931 898347 - 896170 - | hypothetical protein TERM 1129 896511 - 896535 + g 75 -8.7 -3.6707 | opp_overlap 896511 TCGGTCTTTCATGAA CAGAAGAAGCA GGC TGTTTTTTCTG TTTGACCTGTTCCAT TERM 1130 896547 - 896573 + g 75 -5.8 -4.7339 | TCTGTTTGACCTGTT CCATTTCAGAGC GAC GCTTCGCAATGG TTTTTCGCCTTTGTT TERM 1131 898286 - 898251 - G 90 -5.6 -5.45802 | gap 1, opp_overlap 898251 898250, overlap 898245 TGGCTAAAAGAAAAA TGGCAATCACAAGTG TGAAAGC CACT-GTCATTGCCA CTTTACCTAGACGTT SSU98_0932 900806 - 898350 - | hypothetical protein SSU98_0933 901218 - 900781 - | hypothetical protein TERM 1132 901025 - 900997 - G 100 -11.7 -3.91434 | opp_overlap 900988 AAAGTATTTGAGAAA TGCTCCCTCTATC ATG GAAAGAGGGGGCA AGTTGCCAAGTATCA TERM 1133 901224 - 901197 - G 90 -7.1 -5.24129 | gap 1, overlap 901199 TCCTTTCATAAAAAA TA-GGGGTAGCT GATTG AGCCACCCCGTA AAATAGAAAATCTGC TERM 1134 901221 - 901199 - G 100 -11.3 -4.25873 | overlap 901197 CTTTCATAAAAAATA GGGGTAGCT GATTG AGCCACCCC GTAAAATAGAAAATC TERM 1135 901260 - 901235 - R 80 -6.2 -4.89567 | CCGTAAAATAGAAAA TCTGCCAGTA GTAATG TACCGACAGA TTAATAGACGATTTC SSU98_0934 901758 - 901261 - | hypothetical protein SSU98_0935 902097 - 901786 - | hypothetical protein TERM 1136 901818 - 901868 + g 82 -7 -4.86731 | ACTTCGTTTGGTGTA CCATTCCTTTGCGGAACATAAG AAAACCA CTTATATTCCACAAAAGAACGG TTTTATTTAAGCACC SSU98_0936 903345 - 902140 - | Tn916, transcriptional regulator, putative TERM 1137 903462 - 903482 + r 78 -10.4 -3.09834 | CCTGTCGATTTGTAC CCCCCTGT TAGAT ACGGGGGG TTAAGTGCTGGCGTG TERM 1138 903517 - 903575 + r 79 -10.3 -3.11966 | gap 2, opp_overlap 903521, overlap 903524 903526 TTGCCACACCAGCCA GCAAGATCAGTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGACTG-TC-TGC TGTTGGATAACTTTT TERM 1139 903572 - 903521 - R 90 -13 -3.1994 | gap 1, opp_overlap 903517 903524 903526 CACACCAGCCAGCAA GATCAGTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGACTG-TC TGCTGTTGGATAACT TERM 1140 903524 - 903570 + r 100 -13.6 -2.92522 | opp_overlap 903521, overlap 903517 903526 ACCAGCCAGCAAGAT CAGTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGACTG TCTGCTGTTGGATAA TERM 1141 903526 - 903568 + r 78 -10.4 -3.0119 | opp_overlap 903521, overlap 903524 903517 CAGCCAGCAAGATCA GTCCACACCTGCGACTTCCG CTT CGCACGTCGCCTGCGTGGAC TGTCTGCTGTTGGAT SSU98_0937 904908 - 903523 - | hypothetical protein SSU98_0938 905323 - 904937 - | hypothetical protein SSU98_0939 905653 - 905339 - | hypothetical protein TERM 1142 905810 - 905784 - R 100 -10.3 -5.41746 | AATCGGGTAAAAAAA TAGACACCTCA TTTTT TGAAGTGTCTA CCTATTAAATATTCA TERM 1143 906353 - 906405 + r 74 -8.2 -3.81146 | gap 2, opp_overlap 906355 906358, overlap 906358 TACTCAAACATGCAA T-A-TAAGGCATAGGAATTAGTTTAT TTA AAAAACAAATTCCTATGCCTTAATCA TTATTAATTACCAAC TERM 1144 906401 - 906355 - R 100 -18.4 -3.182 | opp_overlap 906353 906358, overlap 906358 CTCAAACATGCAATA TAAGGCATAGGAATTAGTTTAT TTA AAAAACAAATTCCTATGCCTTA ATCATTATTAATTAC TERM 1145 906398 - 906358 - R 100 -15.7 -3.7212 | opp_overlap 906358 906353, overlap 906355 AAACATGCAATATAA GGCATAGGAATTAGTTTAT TTA AAAAACAAATTCCTATGCC TTAATCATTATTAAT TERM 1146 906358 - 906398 + r 100 -15.7 -3.33573 | opp_overlap 906355 906358, overlap 906353 AAACATGCAATATAA GGCATAGGAATTAGTTTAT TTA AAAAACAAATTCCTATGCC TTAATCATTATTAAT SSU98_0940 908241 - 906409 - | DNA helicase TERM 1147 906708 - 906692 - GR 72 -8.1 -3.55444 | TTTTCACCCTTGAAA CTAGATA CTA TATCTAG CCATTCACCTTGTGT SSU98_0941 908560 - 908213 - | hypothetical protein SSU98_0942 910299 - 908629 - | hypothetical protein TERM 1148 910048 - 910006 - G 81 -7.1 -4.58685 | gap 1, opp_overlap 910013 AAAGTGTTCGAAAAA TGATGGAATGGCTGG-ACTG TAAG CAGTTCCATCCAGTTCATCA AACTCAAAAATAGTT SSU98_0943 911072 - 910296 - | Signal recognition particle GTPase SSU98_0944 911578 - 911072 - | transcriptional regulator TERM 1149 911624 - 911593 - R 100 -17.4 -5.34555 | opp_overlap 911593 TTATACCATAAAAAA CGGATAACGCACCA TATT TGGTGCGTTAGCCG TTTTTAGGTTTCTTC TERM 1150 911593 - 911624 + r 100 -17.4 -4.86939 | opp_overlap 911593 TTATACCATAAAAAA CGGATAACGCACCA TATT TGGTGCGTTAGCCG TTTTTAGGTTTCTTC SSU98_0945 911971 - 911618 - | ATPases with chaperone activity, ATP-binding subunit TERM 1151 911953 - 911933 - G 100 -9 -4.64766 | opp_overlap 911933 CTTACATTGTAAAAA GGTAGCCC GCATA GGACTACC TGACTTATAAATCAT SSU98_0946 912347 - 911958 - | methyl-accepting chemotaxis protein SSU98_0947 912571 - 912344 - | hypothetical protein SSU98_0948 913701 - 912625 - | DNA primase (type) TERM 1152 912803 - 912813 + g 74 -4 -5.03145 | ACGATTGGAAGTCCT TTGT CTA ACAA TTTTTTACAAAATTC TERM 1153 913740 - 913722 - R 100 -9.6 -5.14563 | opp_overlap 913722 CTCCCTATCAAAAAA GCAGAAGA CTG TCTCCTGC TAGTTGTTCTCACTT SSU98_0949 914378 - 913740 - | hypothetical protein TERM 1154 914829 - 914878 + r 70 -6.5 -4.13767 | opp_overlap 914831, overlap 914830 TTTGAGTATATAAAA AAGTTCCATAAGACCTCCCTAAT CATC ATTAGGAAGTGCTTATGGAACAA TTTTAGAATACCACA TERM 1155 914830 - 914877 + r 76 -10 -3.08046 | opp_overlap 914831, overlap 914829 TTGAGTATATAAAAA AGTTCCATAAGACCTCCCTAAT CATC ATTAGGAAGTGCTTATGGAACA ATTTTAGAATACCAC TERM 1156 914876 - 914831 - R 100 -15.7 -5.39721 | opp_overlap 914830 914829 TGAGTATATAAAAAA GTTCCATAAGACCTCCCTAAT CATC ATTAGGAAGTGCTTATGGAAC AATTTTAGAATACCA SSU98_0950 916378 - 915779 - | DNA-binding response regulator, putative SSU98_0951 917864 - 916356 - | two-component sensor histidine kinase TERM 1157 917098 - 917072 - G 70 -3.8 -4.90471 | ACTGAAAATATAAAA TAATTGTTATCG TTT CAAGAACAACTA GACTAGTTCTCTTTA SSU98_0952 918556 - 918062 - | hypothetical protein SSU98_0953 919285 - 918566 - | hypothetical protein TERM 1158 918774 - 918762 - G 70 -7.7 -3.64549 | ATAAGAATAATAACA CTGCT TAG AGCAG ATAAACTATTTTTTT SSU98_0954 920177 - 919263 - | hypothetical protein SSU98_0955 922224 - 920149 - | transporter TERM 1159 920692 - 920672 - GR 70 -7.7 -3.57615 | CTAATACTTTGTAAA CCTAGTAAA ATT TTTACTAAG GAGGTTTTGCCGGTA SSU98_0956 923342 - 922230 - | lantibiotic modifying enzyme SSU98_0957 923442 - 923561 + | hypothetical protein SSU98_0958 923669 - 924166 + | DNA recombinase, putative SSU98_0959 924167 - 924583 + | recombinase SSU98_0960 924585 - 926147 + | DNA recombinase, putative TERM 1160 926165 - 926191 + F 100 -12.4 -5.18643 | opp_overlap 926164 926165 ACCAGAAGTAAATAG CCCATGACTCTA CAG TAGAGTTGTGGG TTTTCTTTTGCTTGC SSU98_0961 926290 - 926514 + | hypothetical protein TERM 1161 926742 - 926732 - g 73 -5.4 -4.60808 | TGATAAAAATAGAAA CAAC CTT GTTG TGCCTCCCGGAGCGT SSU98_0962 926529 - 927398 + | hypothetical protein SSU98_0963 927379 - 928113 + | hypothetical protein SSU98_0964 928146 - 929009 + | putative aminoglycoside 6-adenylyltansferase SSU98_0965 929053 - 929580 + | putative adenine phosphoribosyltransferase TERM 1162 929703 - 929690 - f 72 -8.1 -3.56594 | opp_overlap 929690 929685 TGAAACCGTCTGAAA CTGCC TAAC GGCAG TCTGATAATTACTTT SSU98_0966 929808 - 931127 + | putative transposase SSU98_0967 932032 - 931316 - | lantibiotic mersacidin modifying enzyme SSU98_0968 932713 - 932075 - | SalB SSU98_0969 933920 - 933621 - | hypothetical protein SSU98_0970 934209 - 933991 - | SNF2 family protein SSU98_0971 935151 - 934225 - | DNA methylase SSU98_0972 935727 - 935176 - | DNA methylase SSU98_0973 935927 - 935724 - | hypothetical protein TERM 1163 935926 - 935910 - G 76 -9.5 -3.56643 | CGGATATTCTTGAAA TGGATGA GCC TCATCCA CAAAAAGAAAATCAA SSU98_0974 936431 - 936207 - | SNF2 family protein TERM 1164 936407 - 936419 + g 78 -5.5 -5.06816 | ACCCTACCTCATGGG CGAGT AGA GCTCG TTTTTCTTCCACAAT SSU98_0975 940821 - 936451 - | SNF2 family protein TERM 1165 938957 - 938968 + g 71 -3 -5.00616 | GAAGCATTGCGGTGC TCTA CTTC TAGA TTTTTTACCAAACGA TERM 1166 940763 - 940753 - G 75 -3.2 -5.0916 | TTGGTAATATAAAAA CGCT TCA AGCA AGGCTCTATCACGAG TERM 1167 940842 - 940864 + r 81 -8.4 -4.2586 | opp_overlap 940843, overlap 940843 CCTCCCATTTTAAAA AGGCTGAGAG TGT TTCTCAGCCC TTTGTGTTAATCTAG TERM 1168 940863 - 940843 - R 95 -11.2 -4.62069 | opp_overlap 940842 940843 CTCCCATTTTAAAAA GGCTGAGA GTGTT TCTCAGCC CTTTGTGTTAATCTA TERM 1169 940843 - 940863 + r 87 -11.9 -3.14793 | opp_overlap 940843, overlap 940842 CTCCCATTTTAAAAA GGCTGAGAG TGT TTCTCAGCC CTTTGTGTTAATCTA SSU98_0976 941425 - 940871 - | hypothetical protein SSU98_0977 941597 - 941406 - | hypothetical protein SSU98_0978 946550 - 941598 - | agglutinin receptor TERM 1170 946395 - 946415 + g 79 -3.2 -5.27779 | overlap 946397 CATGGTTCCAAGGGC AACCGAGC AAAGG GTTCGGTA TTTTTTACTCTTACG TERM 1171 946397 - 946413 + g 70 -5.8 -4.26398 | overlap 946395 TGGTTCCAAGGGCAA CCGAGC AAAGG GTTCGG TATTTTTTACTCTTA TERM 1172 946649 - 946601 - H 100 -19.3 -5.10933 | TCAGGGAAAAGAAAA TGTTGCTTTTACACTACAAATGT TAT AAAATTGTAGTGTAAAAGCAACA TAGAAAGGAGTAAGC SSU98_0979 946665 - 947039 + | transcriptional regulator TERM 1173 948024 - 948014 - g 71 -6.8 -4.0827 | opp_overlap 948006 ATATAGCTATACAAA GGGA ATT TCCC CTTGCAGATGTTCTT SSU98_0980 947244 - 948041 + | hypothetical protein TERM 1174 948148 - 948112 - T 100 -9.7 -6.04324 | opp_overlap 948112 CCAAAAAATAAAAAA GGATATGCTAACA TTTATACATTT TGTTAGCATATCC TTTTTTATTTCGTCG TERM 1175 948112 - 948148 + T 100 -9.7 -5.68438 | opp_overlap 948112 CCAAAAAATAAAAAA GGATATGCTAACA TTTATACATTT TGTTAGCATATCC TTTTTTATTTCGTCG SSU98_0981 950954 - 948153 - | Tn5252, Orf28 TERM 1176 950075 - 950061 - G 71 -5 -4.614 | opp_overlap 950061 CGCAATGACAGAAAA GAAAGT CAT ACTTCC CTTAATGGCTTGGAC TERM 1177 950814 - 950834 + g 70 -2.5 -5.00884 | overlap 950818 AAACAGAGAATTTTT GGCTGATTT TCG AAATCTTCC TTTTTTAGGAACAGT SSU98_0982 952929 - 950956 - | Type IV secretory pathway, VirB4 component SSU98_0983 953285 - 952926 - | Type IV secretory pathway, VirB4 component SSU98_0984 953718 - 953263 - | hypothetical protein TERM 1178 953677 - 953649 - GR 73 -3.7 -4.94222 | overlap 953651 AATAAGCTATAAAAA GAGGAGGCGGGCA ATT TACTCCCATCCTC CTACATCCCCAAAAT SSU98_0985 954532 - 953678 - | ABC-type cobalt transport system, permease component CbiQ and related transporters TERM 1179 953756 - 953740 - GR 73 -8.7 -3.46813 | overlap 953738 953753 CAATGATTAACAATA TGGCCTG TAC CAAGCCA CCAAACATAATGGCG SSU98_0986 954805 - 954551 - | hypothetical protein SSU98_0987 956628 - 954811 - | Type IV secretory pathway, VirD4 component TERM 1180 954998 - 954987 - G 73 -5.8 -4.56597 | TCTTGGTTCGAAAAA CAGG AACC CCTG CAATGCGTACAAGAC SSU98_0988 957197 - 956628 - | hypothetical protein TERM 1181 957180 - 957156 - G 72 -7.9 -3.81488 | opp_overlap 957156 957152 957157, overlap 957157 CCCTCTCAAACATAA GGTGTTTCCAT AAT ACGGAAACACT CTTGATTTTGGTATC TERM 1182 957157 - 957179 + g 76 -9.2 -3.44148 | opp_overlap 957157 957156, overlap 957156 957152 CCTCTCAAACATAAG GTGTTTCCAT AAT ACGGAAACAC TCTTGATTTTGGTAT TERM 1183 957179 - 957157 - G 81 -11.4 -2.88571 | opp_overlap 957156 957152 957157, overlap 957156 CCTCTCAAACATAAG GTGTTTCCAT AAT ACGGAAACAC TCTTGATTTTGGTAT SSU98_0989 957784 - 957194 - | protease, putative TERM 1184 957486 - 957464 - G 82 -3.4 -5.42164 | opp_overlap 957474 CAGAAACAATAAAAA GATAACATGT GGA ACTTGTTTTC CTACTTGTAACAAGA SSU98_0990 958020 - 957781 - | hypothetical protein SSU98_0991 958412 - 958023 - | arsenate reductase SSU98_0992 958845 - 958417 - | hypothetical protein SSU98_0993 960184 - 958829 - | C-5 cytosine-specific DNA methylase TERM 1185 959457 - 959473 + g 74 -4.3 -4.96762 | TGATTGTCCTTAAGT CGACGAC CAT GTTGCCG TTTTTCTAGTCTATC TERM 1186 959907 - 959897 - G 75 -3.2 -5.10029 | overlap 959887 AGCAATCTCAAAAAA GAGA GTC CCTC GAGTATCTTCAAATC TERM 1187 960231 - 960210 - R 89 -5.9 -5.26875 | TTTCCAACTAAAAAA GAGCCTTAC ACTT GTAAAACTC TTGCTTATATATGAT SSU98_0994 960340 - 960236 - | hypothetical protein SSU98_0995 961151 - 960333 - | hypothetical protein SSU98_0996 961333 - 961148 - | hypothetical protein TERM 1188 961371 - 961346 - R 100 -11.2 -5.61824 | CAAAACGCAAAAAAA GGGGCAGACA ATTTAA TGTCTACCCC GAAAATTTATTAAAA TERM 1189 961417 - 961393 - R 100 -13 -5.50723 | opp_overlap 961393 TTATTAAAACAAAAA TCCTGCCAAA GAATT TTTGGCAGGA TTTTTGGCAGGAAAC TERM 1190 961393 - 961417 + r 100 -13.7 -4.56597 | opp_overlap 961393 TTATTAAAACAAAAA TCCTGCCAAAG AAT TTTTGGCAGGA TTTTTGGCAGGAAAC SSU98_0997 961885 - 961520 - | ribosomal protein L7/L12 SSU98_0998 962346 - 961951 - | ribosomal protein L10 SSU98_0999 962481 - 962386 - | hypothetical protein TERM 1191 962508 - 962487 - R 85 -3.7 -5.64274 | CTAGGCACAAAAAAA TCGCACCTA AACC TAGACACGA AAGTACAAATACGTT TERM 1192 962751 - 962767 + r 78 -9.5 -3.49668 | AACACGAATTGCTGT GATTTGC TTC GCAAATC TTATCTCCAACCTTT TERM 1193 962941 - 962927 - R 83 -8.6 -4.2354 | opp_overlap 962927, overlap 962924 962932 TAAAGTTGAAAATAA GGAAAC GAA GTTTCC TCGCTTGTCGAAGTA TERM 1194 963017 - 962988 - R 91 -6.5 -5.32882 | opp_overlap 962991, overlap 962991 CATGACTATAAAAAA CAACTGCCATTCC CTTG AGAATAGCAGTTT AATCTTATTTAATCT TERM 1195 963014 - 962991 - R 95 -8.2 -4.74611 | opp_overlap 962991, overlap 962988 GACTATAAAAAACAA CTGCCATTCC CTTG AGAATAGCAG TTTAATCTTATTTAA SSU98_1000 964971 - 963022 - | DNA topoisomerase I TERM 1196 965058 - 965083 + r 100 -7.7 -5.84381 | TAGCAGGTGACTCTA CAATAACGAGA TTTT TCTTGTTGTTG TTTTTTTCTTACTAA SSU98_1001 966162 - 965206 - | Rossmann fold nucleotide-binding protein involved in DNA uptake TERM 1197 965944 - 965964 + gr 73 -2.5 -5.1356 | overlap 965947 TACAGCGACATTTCG CAAGGTCAA TTT TTTACCGTG TTTTTCTTGATAGGC TERM 1198 966106 - 966091 - GR 90 -4 -5.67283 | opp_overlap 966080 AAGGCAAAGAAAAAA TTCTCC CGAA GAAGAA TTATTTTTTAGGTAT SSU98_1002 966664 - 966107 - | acetyltransferase SSU98_1003 966935 - 966675 - | hypothetical protein TERM 1199 966894 - 966906 + g 76 -7.7 -4.16121 | overlap 966879 966878 GAGCTGACCTTCGGC CCGTT TCA AACGG TTTATCATCTTTTTC SSU98_1004 967000 - 967365 + | rhodanese-related sulfurtransferase TERM 1200 967991 - 968005 + G 70 -5.7 -4.25104 | CGAGGTTATCACTGG GCAGT CTGTT ACTGC TTTTCATGAAAAAGG SSU98_1005 967362 - 969023 + | NAD(FAD)-dependent dehydrogenase TERM 1201 969032 - 969057 + F 88 -5.5 -5.4756 | gap 1, opp_overlap 969032 ACCATAAGCAACTAA CCTTCTGTGATT TTG GGTC-CAGAAGG TTTTTTCTTGACATT SSU98_1006 969131 - 969682 + | hypothetical protein SSU98_1007 969672 - 970322 + | hypothetical protein TERM 1202 970356 - 970323 - T 78 -9.7 -3.33162 | opp_overlap 970328, overlap 970328 TACTTTATGTTATAA GAAAACAGCTTCTAG TCAC CTAGAGGCTGTTTTT AATGCATTAAACTGA TERM 1203 970351 - 970328 - T 100 -9.6 -4.78237 | opp_overlap 970328, overlap 970323 TATGTTATAAGAAAA CAGCTTCTAG TCAC CTAGAGGCTG TTTTTAATGCATTAA TERM 1204 970328 - 970351 + T 100 -11.8 -4.77157 | opp_overlap 970323 970328 TATGTTATAAGAAAA CAGCTTCTAG TCAC CTAGAGGCTG TTTTTAATGCATTAA SSU98_1008 971365 - 970355 - | hypothetical protein rnhB 972141 - 971368 - | ribonuclease HII rbgA 972979 - 972128 - | ribosomal biogenesis GTPase TERM 1205 973009 - 973028 + r 100 -6.4 -5.97979 | opp_overlap 973012, overlap 973012 TATGATTCATTGAAA AAAGCCGT AAAA ACGGCTTG TTTTTTTATTATTAT TERM 1206 973012 - 973025 + r 95 -8.1 -4.98468 | opp_overlap 973012, overlap 973009 GATTCATTGAAAAAA GCCGT AAAA ACGGC TTGTTTTTTTATTAT TERM 1207 973025 - 973012 - R 100 -8.1 -5.09895 | opp_overlap 973009 973012 GATTCATTGAAAAAA GCCGT AAAA ACGGC TTGTTTTTTTATTAT SSU98_1011 973600 - 973079 - | Fe-S-cluster oxidoreductase SSU98_1012 974281 - 973619 - | nucleotide-binding protein implicated in inhibition of septum formation TERM 1208 974302 - 974285 - R 84 -7.7 -4.65895 | opp_overlap 974285 974290, overlap 974290 TCCTCCAGTCAAAAA CAGAGTC CGAA GACCCTG TTTTCAGATGATTGA SSU98_1013 976021 - 974318 - | putative 5'-nucleotidase SSU98_1014 976505 - 976377 - | hypothetical protein TERM 1209 976557 - 976592 + r 76 -10.6 -2.61144 | opp_overlap 976561 976564, overlap 976556 976561 976564 ATGTTAAAAAGGTTC GAAATAAGCGAATTAG CTAT CTAATCCGCTCATTTC CTATTTACCAAATAC TERM 1210 976588 - 976561 - R 80 -10 -3.61889 | opp_overlap 976557 976556 976561 976564, overlap 976564 TAAAAAGGTTCGAAA TAAGCGAATTAG CTAT CTAATCCGCTCA TTTCCTATTTACCAA TERM 1211 976585 - 976564 - R 83 -9.5 -3.92832 | opp_overlap 976561 976557 976556 976564, overlap 976561 AAAGGTTCGAAATAA GCGAATTAG CTAT CTAATCCGC TCATTTCCTATTTAC pyrC 977864 - 976593 - | dihydroorotase SSU98_1016 978557 - 977904 - | uracil-DNA glycosylase SSU98_1017 979493 - 978567 - | putative glycosyltransferase SSU98_1018 980315 - 979602 - | orotate phosphoribosyltransferase SSU98_1019 980698 - 980372 - | hypothetical protein TERM 1212 980409 - 980421 + g 70 -2.7 -5.00136 | overlap 980410 GAATCAAAATACTGG TCAAT AAA ATTGG TTTTCTCTTTTATTT SSU98_1020 981386 - 980691 - | orotidine 5'-phosphate decarboxylase TERM 1213 981432 - 981411 - R 85 -7.3 -4.99035 | gap 1 TCATTTACACAAAAA TCCCTG-CCA AAT CGGTCAGGGA TGTGCACGAATTCAG SSU98_1021 982489 - 981548 - | dihydroorotate dehydrogenase 1B SSU98_1022 983389 - 982499 - | dihydroorotate dehydrogenase electron transfer subunit TERM 1214 983351 - 983334 - G 100 -9.9 -5.4492 | GATATAGAGAAAAAA CCTTGCT GGCT AGCAAGG TTACACGAAAAGAAG SSU98_1023 983486 - 984094 + | transcriptional regulator SSU98_1024 984060 - 984398 + | putative transcriptional regulator TERM 1215 984488 - 984464 - f 70 -6.6 -4.15543 | opp_overlap 984464 GAAAGACGTTGAAAA GAAAAATGAA AATAA TTCACTTTTC TTTAAGGAAACGCTT SSU98_1025 984563 - 985690 + | ADP-glucose pyrophosphorylase SSU98_1026 985703 - 986290 + | ADP-glucose pyrophosphorylase SSU98_1027 986287 - 986817 + | ADP-glucose pyrophosphorylase SSU98_1028 986826 - 988271 + | glycogen synthase TERM 1216 988300 - 988322 + F 79 -8.5 -4.09685 | gap 1, opp_overlap 988293 988291, overlap 988319 AAAATATACTGAATC GGAGTGGGAC CCTA GTCC-ACTCC TTTTCGGCAATGGAG SSU98_1029 988332 - 989336 + | 1,4-alpha-glucan branching enzyme SSU98_1030 989375 - 990181 + | 1,4-alpha-glucan branching enzyme TERM 1217 990298 - 990277 - T 81 -7.3 -4.65895 | opp_overlap 990277 TTTTGCATGCAAAAA CAACCACCG TTTC CGATGATTG TTCATTTCTCTTATT SSU98_1031 991109 - 990309 - | amino acid ABC transporter periplasmic protein TERM 1218 990377 - 990400 + g 100 -9 -4.96646 | gap 1 CACTTGCTTTTACTT CTGCGATA-AC CTT GTCTATCGCAG TTTTTAGTTCTGTAC SSU98_1032 992228 - 991281 - | putative amino acid transporter, amino acid-binding protein TERM 1219 992290 - 992273 - R 100 -8.5 -5.57729 | opp_overlap 992276 AAACAACATAAAAAA GAAGCTA TTCC TAGCTTC TACCTAAAATTCTTG SSU98_1033 992757 - 992290 - | NTP pyrophosphohydrolase including oxidative damage repair enzymes SSU98_1034 993253 - 992750 - | histone acetyltransferase HPA2-like acetyltransferase TERM 1220 993319 - 993297 - R 100 -8.5 -5.24989 | opp_overlap 993297 993300 GTATACATTAAAAAA CAAGTTGGC ACAAG ACCAACTTG TTAATGATTATTTAA SSU98_1035 994278 - 993331 - | hypothetical protein SSU98_1036 999113 - 994275 - | hypothetical protein TERM 1221 996944 - 996964 + g 76 -7.6 -4.23045 | opp_overlap 996944 AAACTAGTTTGAAGA CTGCCTTG CCATT CAAGGTAG TTTCTTCAATACTTG TERM 1222 997500 - 997518 + g 70 -6 -4.25104 | AGGTTGTTTGGTAAT TTCTTCTG TTA CAGTAGAA TTTTCCTGACGAACA TERM 1223 997821 - 997832 + g 71 -3 -5.06414 | AGAACCAACCTTACC TTCA GTAA TGAA TTTTTCTTCCCCAAC TERM 1224 999057 - 999027 - G 87 -4.6 -5.42131 | overlap 999029 GAAGGACACAAAAAA TAGACTTGTCACTG CCG CTGAGACAAGTCCC ACTGACATTTTTCTA TERM 1225 999055 - 999029 - G 88 -9.4 -4.32846 | overlap 999027 AGGACACAAAAAATA GACTTGTCACTG CCG CTGAGACAAGTC CCACTGACATTTTTC TERM 1226 999246 - 999270 + r 71 -4.9 -4.57581 | opp_overlap 999247, overlap 999247 CAATGTTCATAAAAA ACGACAGGATG CAG TACCCTGTCGC TTTATTCTTTCGAAT TERM 1227 999269 - 999247 - R 100 -9.9 -5.25803 | opp_overlap 999246 999247 AATGTTCATAAAAAA CGACAGGAT GCAGT ACCCTGTCG CTTTATTCTTTCGAA TERM 1228 999247 - 999269 + r 70 -8.4 -3.33464 | opp_overlap 999247, overlap 999246 AATGTTCATAAAAAA CGACAGGATG CAG TACCCTGTCG CTTTATTCTTTCGAA SSU98_1037 1001262 - 999427 - | hypothetical protein SSU98_1038 1003250 - 1001265 - | excinuclease ABC subunit B TERM 1229 1003351 - 1003367 + H 76 -9.5 -3.29511 | opp_overlap 1003344 TTTAATGACTTTGTA TGTCAGA AAT TCTGACA TTATAAAAACCTCAA SSU98_1039 1003442 - 1005646 + | amino acid ABC transporter periplasmic protein TERM 1230 1005911 - 1005891 - g 73 -9.1 -3.53012 | opp_overlap 1005883 CGCCTTCCGTTCAAA TGTCGGAAT GGT ATTCCAACA CTTCAACCTCTTCCC SSU98_1040 1005646 - 1006386 + | ABC-type polar amino acid transport system, ATPase component TERM 1231 1006423 - 1006462 + T 100 -13.2 -5.7827 | gap 1, opp_overlap 1006436 TGCATCAAGGTTTCA GATTGAAGAAAA-AGTCCA TTT TGGACGATTTTCTTCAATC TTTTTTCTTTATGTT TERM 1232 1006448 - 1006436 - T 93 -7.7 -5.12068 | opp_overlap 1006423 CAGATTGAAGAAAAA GTCCA TTT TGGAC GATTTTCTTCAATCT TERM 1233 1006525 - 1006490 - T 100 -10.6 -5.79595 | opp_overlap 1006490 GTTGAAAATAAAAAA CTCTTAGAAACGCCGA AATA TCAATGTTTCTAAGAG TTTAATGACTTGCTA TERM 1234 1006490 - 1006525 + T 74 -8.4 -3.80114 | opp_overlap 1006490 GTTGAAAATAAAAAA CTCTTAGAAACGCCGA AATA TCAATGTTTCTAAGAG TTTAATGACTTGCTA TERM 1235 1006599 - 1006614 + T 90 -4 -5.92337 | overlap 1006600 TCTACGTTCTGAAGC TTTGAC TTTC GTCAAG TTTTTTTTGGTATCT SSU98_1041 1007131 - 1006640 - | histone acetyltransferase HPA2-like acetyltransferase TERM 1236 1007384 - 1007406 + rH 100 -8.5 -5.55769 | TTGAGCAGATTTCGA CACACTACT AAATA GGTAGTGTG TTTTTTCTTGTAAAG TERM 1237 1007484 - 1007472 - gR 74 -4.9 -4.77036 | opp_overlap 1007472 CTCGACCATCAAAAA GATTT GCG AAATC TAGTTCAGGACCTAA SSU98_1043 1007673 - 1007572 - | hypothetical protein SSU98_1042 1007430 - 1008962 + | ABC transporter ATPase TERM 1238 1008993 - 1008967 - TR 76 -2.3 -5.4492 | gap 1, opp_overlap 1008973, overlap 1008973 GACAGATATAAAAAA GGAAA-ATGGCA CACA CGCCAAATTTCC TTTTATTATTTATTC TERM 1239 1008986 - 1008973 - TR 74 -4.5 -4.90477 | opp_overlap 1008973, overlap 1008967 TATAAAAAAGGAAAA TGGCA CACA CGCCA AATTTCCTTTTATTA SSU98_1044 1010323 - 1009043 - | O-acetylhomoserine sulfhydrylase TERM 1240 1010779 - 1010801 + r 74 -4.9 -4.87133 | overlap 1010771 CAACATTGCGGTTAC CGATTTTCT AGAAA GGAGAATCG TTTTATTTCCAACAT TERM 1241 1010993 - 1011016 + r 95 -12.6 -4.28188 | opp_overlap 1010986 ATAGACTAGTCATCA GTAGGTCAAA CTAA TTTGACCTAC TTTATCTTATAGATG SSU98_1045 1011742 - 1011191 - | hypothetical protein TERM 1242 1011345 - 1011357 + g 71 -4.9 -4.59954 | opp_overlap 1011345 TTGTCGCGAAGCAAT TTGAT TTC ATCAA TATTTTTTTGTTCTT TERM 1243 1012036 - 1011997 - R 100 -15.3 -2.7623 | gap 1, opp_overlap 1012004, overlap 1012004 TAATATTAAATTAAG CAATAAACCCCACTGACT TATTC AGCCAGTGGGGTTT-TTG AGTGTTTTCCGTAGA TERM 1244 1012004 - 1012030 + r 100 -12.3 -4.80396 | opp_overlap 1011997 1012004 AAATTAAGCAATAAA CCCCACTGACT TATTC AGCCAGTGGGG TTTTTGAGTGTTTTC TERM 1245 1012030 - 1012004 - R 100 -14.5 -4.37247 | opp_overlap 1012004, overlap 1011997 AAATTAAGCAATAAA CCCCACTGACT TATTC AGCCAGTGGGG TTTTTGAGTGTTTTC SSU98_1046 1012512 - 1012078 - | galactose mutarotase-like protein SSU98_1047 1012969 - 1012520 - | galactose mutarotase-like protein TERM 1246 1013025 - 1012995 - R 86 -9.9 -4.34402 | gap 1, opp_overlap 1012995 1012993 1012989 1012998 TCCCTTATATGAAAA CAAGGATGC-TAAC TTGA GCTAGGCATCCTTG TATTAGTTTTATTCA SSU98_1048 1014461 - 1013034 - | 6-phospho-beta-galactosidase TERM 1247 1014505 - 1014473 - R 85 -7 -4.94811 | opp_overlap 1014473 TCAAAAATAAATAAA GGGGTAGGAGTT GGAGATGAT AACTCCCTCCCC TTTTGATTAAGAACC TERM 1248 1014473 - 1014505 + r 70 -5.5 -4.4078 | opp_overlap 1014473 TCAAAAATAAATAAA GGGGTAGGAGTTG GAGATGA TAACTCCCTCCCC TTTTGATTAAGAACC TERM 1249 1014722 - 1014706 - R 71 -7.3 -3.85698 | CTGTTGTTTGACAAA GTCAAGA GCA CCTTGAC CATCTCGTGTGAGTT SSU98_1049 1015524 - 1014685 - | phosphotransferase system cellobiose-specific component IIC TERM 1250 1015419 - 1015409 - G 70 -5.4 -4.53602 | TTTACACCAAAGAAA GTTG GAA CAAC TGAAGCACGTCCAAT SSU98_1050 1016363 - 1015539 - | phosphotransferase system cellobiose-specific component IIC SSU98_1051 1016680 - 1016363 - | phosphotransferase system cellobiose-specific component IIA SSU98_1052 1016855 - 1016712 - | transcriptional antiterminator SSU98_1053 1017388 - 1016900 - | transcriptional antiterminator TERM 1251 1017623 - 1017576 - R 93 -6.6 -5.63103 | gap 1, opp_overlap 1017607 TTTTAAGCAAAAAAA GACTACAAACAAACC-GAGAATA TCC TACTCTCAAATCCATTTGTAGTC TTGCCTAATCGAATT SSU98_1054 1018240 - 1017734 - | tagatose-1,6-bisphosphate aldolase SSU98_1055 1018756 - 1018322 - | tagatose-1,6-bisphosphate aldolase TERM 1252 1018419 - 1018379 - GR 73 -9.2 -2.87344 | gap 1, opp_overlap 1018379 1018416, overlap 1018382 TAGTCGTTTTACAGA CCA-CTCTACTAGGCAATC TGGT AATCGACTAGTAGAGCTGG TATCATAGCCAGTTT TERM 1253 1018415 - 1018382 - GR 74 -9.7 -2.69151 | opp_overlap 1018379, overlap 1018379 TCGTTTTACAGACCA CTCTACTAGGCAATC TGGT AATCGACTAGTAGAG CTGGTATCATAGCCA TERM 1254 1018416 - 1018431 + gr 73 -2.6 -5.15634 | gap 1, opp_overlap 1018379, overlap 1018379 AATCGACTAGTAGAG CTGG-TA TCA TAGCCAG TTTTTTCATAAGCTA SSU98_1056 1019510 - 1018713 - | fructose-1-phosphate kinase-like protein SSU98_1057 1020171 - 1019656 - | galactose-6-phosphate isomerase subunit LacB SSU98_1058 1020557 - 1020198 - | ribose 5-phosphate isomerase RpiB SSU98_1059 1020848 - 1020615 - | hypothetical protein TERM 1255 1020811 - 1020794 - GR 100 -5.6 -5.76237 | opp_overlap 1020794 TATACAAACAAAAAA CCAACA TTTCTC TGTTGG TTTTGATAACTTTAT TERM 1256 1020794 - 1020811 + gr 70 -5.6 -4.33767 | opp_overlap 1020794 TATACAAACAAAAAA CCAACA TTTCTC TGTTGG TTTTGATAACTTTAT SSU98_1060 1021590 - 1020823 - | sugar metabolism transcriptional regulator TERM 1257 1021752 - 1021730 - H 73 -7.1 -4.09685 | gap 1, opp_overlap 1021709, overlap 1021732 GCGCAGTTCGCAAAA CA-TCGGTTC GTTA GAACCGACTG CAAGGAAAAAAGAAA TERM 1258 1021749 - 1021732 - H 84 -9.9 -3.64716 | overlap 1021730 GCAGTTCGCAAAACA TCGGTTC GTTA GAACCGA CTGCAAGGAAAAAAG TERM 1259 1022189 - 1022203 + G 76 -9.2 -3.48703 | opp_overlap 1022162 CGATGCTCTGCAACG CGGCCG TGA TGGCCG TTGGTATTTAAATTT TERM 1260 1022343 - 1022333 - g 78 -4 -5.19212 | ACGAGCAGGAAAAAA GAAA GTC TTTC ATGTTCCCAAAGATT SSU98_1061 1021869 - 1022624 + | hypothetical protein TERM 1261 1022773 - 1022755 - f 74 -8.2 -3.76232 | overlap 1022758 CTGTTAAATAGACAA CAAGTAGC GGA ACTACTTG GAATAGATCCTAAAT TERM 1262 1022910 - 1022968 + F 74 -3.7 -5.24129 | opp_overlap 1022910 1022912, overlap 1022910 CGATTGACGGATAAT -GATTGATAAAATTAGATTTTTCATATAT CCT ATATGTGACTAGTCTA-TTTTATCAATCA TTTTTTATAGAAAGG TERM 1263 1022910 - 1022967 + F 84 -9.7 -3.73995 | gap 1, opp_overlap 1022910 1022912, overlap 1022910 CGATTGACGGATAAT GATTGATAAAATTAGATTTTTCATATAT CCT ATATGTGACTAGTCTA-TTTTATCAATC ATTTTTTATAGAAAG SSU98_1062 1022992 - 1023240 + | integrase TERM 1264 1023531 - 1023512 - g 80 -5 -5.20154 | overlap 1023500 ACAGAATTTAAAAAA CTCAGACA ATAC TGCCTAAG TCATACTGAGGATGA SSU98_1063 1023314 - 1023784 + | integrase TERM 1265 1024009 - 1023987 - g 89 -6.2 -5.26316 | overlap 1023991 1023992 TGATGCCAGAAAAAA GACACCAGCA AGA TGCTGAGGCC TTAAATTTATTGAAT SSU98_1064 1023830 - 1024039 + | integrase SSU98_1065 1024814 - 1024266 - | hypothetical protein SSU98_1066 1025298 - 1024954 - | hypothetical protein TERM 1266 1025331 - 1025347 + H 81 -3.7 -5.4505 | opp_overlap 1025331 CTTTTTGTGAGATTA TCATAAC ACC GTTTTGA TTTTTTGTTAAACAC SSU98_1067 1025429 - 1026229 + | transcriptional regulator TERM 1267 1026378 - 1026338 - T 79 -6.9 -4.46617 | opp_overlap 1026349, overlap 1026349 AAAACAAATTGAAAA GCACAGTAAAAGGAGGCTA TGA CAGCCTCCTTTTTATATGT CAAATTGGAAAAGTC TERM 1268 1026349 - 1026367 + T 100 -10.3 -5.03994 | opp_overlap 1026349 1026338 AAAAGCACAGTAAAA GGAGGCT ATGAC AGCCTCC TTTTTATATGTCAAA TERM 1269 1026367 - 1026349 - T 95 -11 -4.41797 | opp_overlap 1026349, overlap 1026338 AAAAGCACAGTAAAA GGAGGCTA TGA CAGCCTCC TTTTTATATGTCAAA SSU98_1068 1028124 - 1026892 - | A/G-specific DNA glycosylase TERM 1270 1028099 - 1028076 - G 100 -8.8 -4.70921 | opp_overlap 1028076 TATAACACAAAGAAA GGGAGCCAGC TTTT GCCAACTCCC TTATATCGTTTATAA TERM 1271 1028160 - 1028126 - R 86 -10.1 -4.27965 | opp_overlap 1028137, overlap 1028129 ATAATCAAAATCAAA CTAGCTCCAAAGGTT TGGGG AACCTTTGGAGGTTG GAAATAGAGCGAACG TERM 1272 1028157 - 1028129 - R 79 -10.4 -3.11579 | opp_overlap 1028137, overlap 1028126 ATCAAAATCAAACTA GCTCCAAAGGTT TGGGG AACCTTTGGAGG TTGGAAATAGAGCGA SSU98_1069 1028622 - 1028230 - | hypothetical protein TERM 1273 1028277 - 1028264 - G 71 -6.7 -4.2243 | ACAAACATGGTAAAA CTTGC TGAA GCAAG TAGCTGTTTATCTTG SSU98_1070 1030348 - 1028606 - | ABC-type multidrug transport system, ATPase and permease component SSU98_1071 1032074 - 1030335 - | ABC-type multidrug transport system, ATPase and permease component TERM 1274 1030838 - 1030807 - G 71 -8.8 -3.32456 | gap 1, opp_overlap 1030807, overlap 1030798 1030796 1030805 AAATTAGAACGAATA GTTCCAGCAAAAAGC TGG GCCTGTTGC-GGAAC GATGGCAATTCGCTG TERM 1275 1031940 - 1031909 - G 90 -5.8 -5.58074 | opp_overlap 1031912, overlap 1031910 1031912 1031914 CAACCAGTAAAAAAA GCATAGCAACCAGG TTTC CCTGGCTGCCATTT GGAATAATTGTATCA TERM 1276 1031939 - 1031910 - G 83 -9.3 -3.93218 | opp_overlap 1031912, overlap 1031909 1031912 1031914 AACCAGTAAAAAAAG CATAGCAACCAGG TTTC CCTGGCTGCCATT TGGAATAATTGTATC TERM 1277 1031937 - 1031912 - G 91 -11.9 -3.53247 | opp_overlap 1031912, overlap 1031910 1031909 1031914 CCAGTAAAAAAAGCA TAGCAACCAGG TTTC CCTGGCTGCCA TTTGGAATAATTGTA TERM 1278 1031935 - 1031914 - G 95 -12.3 -3.3215 | opp_overlap 1031912, overlap 1031912 1031910 1031909 AGTAAAAAAAGCATA GCAACCAGG TTTC CCTGGCTGC CATTTGGAATAATTG eutD 1033056 - 1032076 - | phosphotransacetylase TERM 1279 1032422 - 1032438 + g 77 -6.5 -4.68384 | ACCTTATCAACTTTA GGACCTG AGC CAGATCC TTTTGTTGAATAGCT SSU98_1073 1033961 - 1033068 - | pseudouridylate synthase, 23S RNA-specific ppnK 1034809 - 1033961 - | inorganic polyphosphate/ATP-NAD kinase SSU98_1075 1035434 - 1034763 - | hypothetical protein SSU98_1076 1035521 - 1036087 + | hypothetical protein TERM 1280 1036091 - 1036122 + F 75 -9.7 -2.80796 | opp_overlap 1036091, overlap 1036090 1036098 1036103 1036117 CACATGAAATAACTA TAAAAAATCAGCC AACTAA GGTTGATTTTTTA GTTTCACTACTGAAA TERM 1281 1036098 - 1036115 + F 76 -3.4 -5.38497 | opp_overlap 1036091, overlap 1036091 1036090 1036103 AATAACTATAAAAAA TCAGCC AACTAA GGTTGA TTTTTTAGTTTCACT TERM 1282 1036117 - 1036138 + F 73 -2.4 -5.31158 | opp_overlap 1036091, overlap 1036091 1036090 1036124 1036133 CCAACTAAGGTTGAT TTTTTAGT TTCACT ACTGAAAA TTTTTCATTTTTTTG TERM 1283 1036133 - 1036145 + F 88 -4.9 -5.52986 | overlap 1036124 1036117 TTTTAGTTTCACTAC TGAAA ATT TTTCA TTTTTTTGATAGAAT TERM 1284 1036205 - 1036182 - f 70 -3.2 -5.05782 | overlap 1036184 ATCTATCGTAAAAAA TACTTTTATG TCAT CATAAAAGCT CAGTGTGTAAAAGGA TERM 1285 1036203 - 1036184 - f 76 -8 -4.15748 | overlap 1036182 CTATCGTAAAAAATA CTTTTATG TCAT CATAAAAG CTCAGTGTGTAAAAG SSU98_1077 1036449 - 1036583 + | phosphoribosylpyrophosphate synthetase SSU98_1078 1036592 - 1037209 + | phosphoribosylpyrophosphate synthetase SSU98_1079 1037220 - 1038335 + | cysteine sulfinate desulfinase/cysteine desulfurase SSU98_1080 1038325 - 1038681 + | hypothetical protein TERM 1286 1038752 - 1038762 + GF 79 -6.8 -4.68506 | opp_overlap 1038745, overlap 1038745 GAGAATAAGGATGCA GCCA TTC TGGC TTTTTCCGGTTGCTT SSU98_1081 1038650 - 1038886 + | hypothetical protein TERM 1287 1038881 - 1038904 + F 100 -9 -5.44119 | opp_overlap 1038881 1038883 TATTTACAAACACTA GATTAGACAG TTTC CTGTTTAATC TTTTTTTAAAATCAA SSU98_1082 1039021 - 1039659 + | redox-sensing transcriptional repressor Rex TERM 1288 1039705 - 1039729 + GT 70 -5.6 -4.30719 | opp_overlap 1039706, overlap 1039706 GGAAATGAATATAAA ACAGGGGATC ATACA GAACCCCTGC TTTCTTATACCCAGA TERM 1289 1039706 - 1039728 + GT 71 -9.1 -3.1811 | opp_overlap 1039706, overlap 1039705 GAAATGAATATAAAA CAGGGGATC ATACA GAACCCCTG CTTTCTTATACCCAG TERM 1290 1039728 - 1039706 - gT 100 -9.1 -4.76274 | opp_overlap 1039706 1039705 GAAATGAATATAAAA CAGGGGATC ATACA GAACCCCTG CTTTCTTATACCCAG TERM 1291 1040108 - 1040086 - gT 74 -7.8 -3.8397 | overlap 1040074 ATAGACGGACAAGAA GTCAGTCAAA CGA TTCAACTGAC TCAAAATAGTCCACT radC 1041033 - 1040293 - | DNA repair protein RadC SSU98_1083 1039663 - 1040355 + | hypothetical protein SSU98_1085 1041895 - 1041146 - | sortase SSU98_1086 1044346 - 1041902 - | DNA gyrase subunit A ldh 1044535 - 1045518 + | L-lactate dehydrogenase TERM 1292 1045566 - 1045529 - T 95 -10.7 -4.62002 | opp_overlap 1045530 1045539, overlap 1045539 ACTAATTATATAAAA TAGTAAAAAAGGTGAGC AATA GCTCGCCTTTTTTACCT TCTAATATCATAGCG TERM 1293 1045530 - 1045565 + T 100 -14.2 -3.484 | opp_overlap 1045529 1045539, overlap 1045539 CTAATTATATAAAAT AGTAAAAAAGGTGAGC AATA GCTCGCCTTTTTTACC TTCTAATATCATAGC TERM 1294 1045556 - 1045539 - T 95 -6.9 -5.36314 | opp_overlap 1045539 1045530, overlap 1045529 TAAAATAGTAAAAAA GGTGAGC AATA GCTCGCC TTTTTTACCTTCTAA TERM 1295 1045539 - 1045556 + T 100 -9.1 -5.1925 | opp_overlap 1045529 1045539, overlap 1045530 TAAAATAGTAAAAAA GGTGAGC AATA GCTCGCC TTTTTTACCTTCTAA SSU98_1088 1045794 - 1045561 - | dihydrofolate reductase SSU98_1089 1046193 - 1045798 - | dihydrofolate reductase TERM 1296 1046249 - 1046225 - R 100 -14.5 -2.9138 | opp_overlap 1046225 1046231, overlap 1046231 CAGCAAAGAACATGA TAAAAAGGTCC ACT GGACCTTTTTA TTTAGATTTGATATA TERM 1297 1046225 - 1046249 + r 100 -14.5 -3.8822 | opp_overlap 1046225 1046231, overlap 1046231 CAGCAAAGAACATGA TAAAAAGGTCC ACT GGACCTTTTTA TTTAGATTTGATATA TERM 1298 1046243 - 1046231 - R 100 -9.1 -4.9934 | opp_overlap 1046231 1046225, overlap 1046225 AGAACATGATAAAAA GGTCC ACT GGACC TTTTTATTTAGATTT TERM 1299 1046231 - 1046243 + r 100 -9.1 -5.34381 | opp_overlap 1046225 1046231, overlap 1046225 AGAACATGATAAAAA GGTCC ACT GGACC TTTTTATTTAGATTT SSU98_1090 1047200 - 1046247 - | ABC transporter permease SSU98_1091 1048290 - 1047202 - | ABC-type uncharacterized transport system, permease component SSU98_1092 1049791 - 1048256 - | ABC-type uncharacterized transport system, ATPase component TERM 1300 1049368 - 1049382 + gr 70 -8.6 -3.07994 | opp_overlap 1049368 1049367 1049365 CACCCACAGAAATAT CTGCAA CCT TTGCAG TTGGATCAACTTCAA TERM 1301 1049457 - 1049469 + gr 75 -9.1 -3.53012 | opp_overlap 1049455 TTAAGGTCAATCACG CCACC TTT GGTGG TTTCAGAACCAAGAA SSU98_1093 1049899 - 1049798 - | hypothetical protein TERM 1302 1049927 - 1049874 - G 100 -15.7 -2.93723 | opp_overlap 1049892, overlap 1049877 1049892 TCTTCATCAACTATA CCATTTTTGTCAGTAAAACCTACCA TAGC TGATAGGCTTTACTGACAAAAATCT CAGCCCGAAAACGGC TERM 1303 1049924 - 1049877 - G 100 -21.8 -2.70936 | opp_overlap 1049892, overlap 1049874 1049892 TCATCAACTATACCA TTTTTGTCAGTAAAACCTACCA TAGC TGATAGGCTTTACTGACAAAAA TCTCAGCCCGAAAAC TERM 1304 1049909 - 1049892 - G 72 -6.3 -4.25104 | opp_overlap 1049892, overlap 1049877 1049874 TTTTTGTCAGTAAAA CCTACCA TAGC TGATAGG CTTTACTGACAAAAA TERM 1305 1049959 - 1049939 - R 100 -13.9 -4.11394 | opp_overlap 1049931 ATCTCAGCCCGAAAA CGGCGCCCC GTC GGGTCGCCG AATCGGAATTGTCGA SSU98_1094 1051053 - 1049986 - | ABC transporter periplasmic protein SSU98_1095 1051538 - 1051134 - | cytidine deaminase TERM 1306 1051171 - 1051193 + gr 79 -7.6 -4.32857 | overlap 1051172 TATGGTAGTAATTCC CCGACTGTCG TCT CGACTGTCGA TTTATCTTTAGCGAC TERM 1307 1051172 - 1051192 + gr 80 -11.1 -3.19232 | overlap 1051171 ATGGTAGTAATTCCC CGACTGTCG TCT CGACTGTCG ATTTATCTTTAGCGA SSU98_1096 1052172 - 1051510 - | deoxyribose-phosphate aldolase TERM 1308 1052192 - 1052211 + r 73 -2.2 -5.27023 | opp_overlap 1052192 TTCTCCGTACATTAA GAAATAAT CTCG ATGATTTC TTTTGTTTTTACACT SSU98_1097 1053465 - 1052188 - | pyrimidine-nucleoside phosphorylase SSU98_1098 1054052 - 1053462 - | 16S RNA G1207 methylase RsmC TERM 1309 1053880 - 1053897 + g 70 -2.7 -5.00884 | TCCAACACTGATGCC CCTTTTT CAAA ATAAAGG TTTTTTAAAAGCACT SSU98_1099 1054161 - 1055081 + | pantothenate kinase TERM 1310 1055372 - 1055347 - g 86 -6.8 -4.97405 | opp_overlap 1055362 1055366, overlap 1055351 ATTCACAAAAACAAA GCAAGCCGCG ATAAAG CACGTCTTGC ATCAAAACTTGCTTA TERM 1311 1055395 - 1055351 - g 72 -7.9 -3.8823 | opp_overlap 1055362 1055366, overlap 1055347 1055392 ACAAAAACAAAGCAA GCCGCGATAAAGCACGTCTTG CAT CAAAACTTGCTTAATCATGAC CACCCGTCAAACGGG rpsT 1055140 - 1055388 + | 30S ribosomal protein S20 TERM 1312 1055395 - 1055413 + T 100 -14.6 -3.53224 | opp_overlap 1055392 CTTGCTTAATCATGA CCACCCGT CAA ACGGGTGG TTTGAACAAGGGCTA TERM 1313 1055435 - 1055423 - T 75 -9.1 -3.61398 | GGGTGGTTTGAACAA GGGCT ATA AGCCC ACATCACCAGCCAGC TERM 1314 1055445 - 1055466 + T 91 -11.5 -3.93262 | opp_overlap 1055442 AAGCCCACATCACCA GCCAGCGCC TAAA GACGCTGGC TTTCACTTTGTTCAA TERM 1315 1055508 - 1055522 + T 73 -10 -2.54687 | overlap 1055507 TTTGACTCGTCACTA GCCTCT TAA AGAGGC ATTCGTACTACTTGC SSU98_1101 1056030 - 1055530 - | IS200 family transposase TERM 1316 1056077 - 1056095 + r 91 -10.2 -4.55295 | overlap 1056078 TGTAACCTTCGTCGC GCACCCGC ATA GCGGGTGG TTTATTTGTCACGCA TERM 1317 1056078 - 1056094 + r 100 -13.7 -3.32695 | overlap 1056077 GTAACCTTCGTCGCG CACCCGC ATA GCGGGTG GTTTATTTGTCACGC TERM 1318 1056152 - 1056169 + r 100 -4.1 -6.71862 | opp_overlap 1056153, overlap 1056153 TCACATAATTAAAAA AGAAACC TTTG GGTTTCC TTTTTTTTTTATTTT TERM 1319 1056168 - 1056153 - R 95 -7.6 -5.35354 | opp_overlap 1056153 1056152 CACATAATTAAAAAA GAAACC TTTG GGTTTC CTTTTTTTTTTATTT TERM 1320 1056153 - 1056168 + r 84 -7.6 -4.54881 | opp_overlap 1056153, overlap 1056152 CACATAATTAAAAAA GAAACC TTTG GGTTTC CTTTTTTTTTTATTT TERM 1321 1056251 - 1056302 + r 95 -11 -4.60317 | opp_overlap 1056261, overlap 1056255 ACATCATTAACTCGT CAACCGTAAAGCCCTCACTAAG ATTATACA CCTAGTGAGGGCTTTATGTTCG TTTTCATTATTCTGT TERM 1322 1056255 - 1056298 + r 100 -14.8 -3.78229 | opp_overlap 1056261, overlap 1056251 CATTAACTCGTCAAC CGTAAAGCCCTCACTAAG ATTATACA CCTAGTGAGGGCTTTATG TTCGTTTTCATTATT TERM 1323 1056292 - 1056261 - R 93 -12.4 -3.66178 | opp_overlap 1056255 1056251 CTCGTCAACCGTAAA GCCCTCACTAAG ATTATACA CCTAGTGAGGGC TTTATGTTCGTTTTC TERM 1324 1056318 - 1056356 + r 73 -5.8 -4.45127 | TTTTCATTATTCTGT GGGTGAGGCGGAGCCATC ATG GATGTCTTTCCCACTCCC TATTTTTTATTATTA SSU98_1102 1057637 - 1056408 - | transglutaminase/protease-like domain-containing protein TERM 1325 1057859 - 1057845 - H 76 -10 -2.9914 | GAGGCTGGAGATAGA GCGAAC AGA GTTCGC TACAAAACTACCTGG SSU98_1103 1057889 - 1057993 + | hypothetical protein SSU98_1104 1059343 - 1057985 - | Signal transduction histidine kinase SSU98_1105 1060010 - 1059336 - | response regulator SSU98_1106 1060107 - 1060000 - | hypothetical protein TERM 1326 1060062 - 1060048 - G 93 -10 -4.30977 | opp_overlap 1060055, overlap 1060043 AATAAACAAACCAAA GACCTG GGA CAGGTC ACGGTCTTTAAGAGA SSU98_1107 1060581 - 1060201 - | hypothetical protein TERM 1327 1060738 - 1060776 + H 78 -3.9 -5.40464 | gap 1, opp_overlap 1060727 1060750, overlap 1060760 1060770 1060771 1060774 AACATACTAAGATTA GTAGTGAGGA-AATCTCC GACG GGAGAAAGTACTCACTAC TTTTTCTTTATGATA TERM 1328 1061668 - 1061648 - g 77 -6.2 -4.63218 | gap 1, opp_overlap 1061648 GTGCCGTCAAGAAAA CCTC-TCCA ATAC TGGAAGAGG TCCGTTACTATACAA TERM 1329 1062084 - 1062044 - g 87 -6.1 -5.10877 | ATAAGAAACGAAAAA GACAATCGCAAACGACTTC AAC GAAGCTGCACACGATTGCC TCCATACATCGTCTC SSU98_1108 1060819 - 1062168 + | transposase TERM 1330 1062365 - 1062348 - T 82 -7.7 -4.45577 | opp_overlap 1062348 ACAAATGGTAGAAAA GAAGCCC TCTC GGACTTC TGAATTACAACTCTG SSU98_1109 1063026 - 1062370 - | phosphate uptake regulator SSU98_1110 1063813 - 1063055 - | ABC-type phosphate transport system, ATPase component SSU98_1111 1064628 - 1063825 - | ABC-type phosphate transport system, ATPase component TERM 1331 1064173 - 1064140 - G 76 -9.7 -3.32844 | opp_overlap 1064147 1064149 CTGTCCACCTGATAA GGTAAAGGCTGACTT GTGC AAGTCATCTTTTACC TGATCCCAAAGGGCT SSU98_1112 1065408 - 1064653 - | putative phosphate ABC transporter (permease protein) SSU98_1113 1065541 - 1065398 - | hypothetical protein SSU98_1114 1066449 - 1065538 - | ABC-type phosphate transport system, permease component SSU98_1115 1066850 - 1066452 - | ABC-type phosphate transport system, periplasmic component SSU98_1116 1067323 - 1066763 - | ABC-type phosphate transport system, periplasmic component SSU98_1117 1067580 - 1067461 - | tRNA and rRNA cytosine-C5-methylase SSU98_1118 1068593 - 1067619 - | rRNA methyltransferase, putative TERM 1332 1068725 - 1068703 - R 79 -4.9 -5.08011 | AAAACTCTCAAAAAA TGCTTGG GCTTCACTA CCAAGCA AATGATTATATTTAT SSU98_1119 1069525 - 1068854 - | hypothetical protein SSU98_1120 1069793 - 1069515 - | hypothetical protein TERM 1333 1069756 - 1069726 - G 88 -6.9 -5.09225 | gap 1, opp_overlap 1069734 1069735, overlap 1069730 ACCTGATTCAAAAAA GAAAGCACGGAGGA AATC TCCTCTGTGC-TCC ACGAAAAATCAAGTG TERM 1334 1069753 - 1069730 - G 100 -11 -5.0666 | opp_overlap 1069734 1069735, overlap 1069726 GATTCAAAAAAGAAA GCACGGAGGA AATC TCCTCTGTGC TCCACGAAAAATCAA TERM 1335 1069772 - 1069796 + g 100 -9.5 -4.91194 | ACGAAAAATCAAGTG GATATGAATAA TTT TTGTTCATATC TTTTATCTTTCTTAT spxA 1070233 - 1069808 - | transcriptional regulator Spx SSU98_1122 1071060 - 1070284 - | Kef-type K+ transporter NAD-binding component SSU98_1123 1071946 - 1071023 - | bifunctional riboflavin kinase/FMN adenylyltransferase SSU98_1124 1072298 - 1071981 - | pseudouridine synthase SSU98_1125 1072512 - 1072378 - | pseudouridine synthase SSU98_1126 1072879 - 1072481 - | pseudouridine synthase TERM 1336 1072815 - 1072831 + gr 82 -3 -5.54192 | gap 1, overlap 1072813 AAAACAACATCATGC GAGGTCA TACC TG-CCTC TTTTTTTACATTAAT TERM 1337 1072902 - 1072881 - R 91 -11.5 -4.29304 | overlap 1072875 TCATTATAACACAAA GGACCGCTC TTGT GGGCGGTCC GGTATCAATCAGTCA SSU98_1127 1073120 - 1072911 - | hypothetical protein SSU98_1128 1073359 - 1073147 - | hypothetical protein SSU98_1129 1073532 - 1073371 - | hypothetical protein SSU98_1130 1074607 - 1073474 - | hypothetical protein TERM 1338 1074225 - 1074251 + gr 72 -9.5 -2.73771 | gap 1 TGGCGTGTCAAACCT TGCAGGAGCTGG TCTT TCAGCTCC-GCA TCCTCTGTCTGCTCA SSU98_1131 1074837 - 1074604 - | hypothetical protein SSU98_1132 1075083 - 1074850 - | histone acetyltransferase HPA2-like acetyltransferase TERM 1339 1075165 - 1075143 - g 70 -2.7 -5.0133 | overlap 1075144 GATTTTCGTAAAAAA GTTCTCGCA TACTG TGAGAAAAC CGGCAGTATTACTGA SSU98_1133 1075113 - 1075463 + | transposase TERM 1340 1075933 - 1075889 - g 77 -3.7 -5.21709 | gap 1, opp_overlap 1075901, overlap 1075891 GCTCACATCAAAAAA CACCTC-AGAAGAGTATTGC CAAATT GCGATACTTTTCTTGAGGCA CTTTCGTCCTGCTCT SSU98_1134 1075481 - 1075960 + | IS630-Spn1, transposase Orf2 SSU98_1135 1076242 - 1075961 - | histone acetyltransferase HPA2-like acetyltransferase SSU98_1136 1077497 - 1076244 - | hypothetical protein SSU98_1137 1077761 - 1077504 - | hypothetical protein TERM 1341 1077595 - 1077579 - G 82 -3 -5.55001 | CAATAAAAAATAAAA GAAACG AACCG CATTTC TAGCATCTGGAAGTG SSU98_1138 1078249 - 1077779 - | hypothetical protein TERM 1342 1078310 - 1078292 - H 74 -3.8 -5.2422 | opp_overlap 1078295, overlap 1078294 1078295 AATTATACCAAAAAA CACCGGTC TAT AACCGATA TTTCCATTGTCTCTA TERM 1343 1078698 - 1078685 - g 82 -3.1 -5.42265 | gap 1, overlap 1078687 TTAAACGAGAAAAAA GAGCTG ATG CAGC-C ACAGATTGATGCCAT TERM 1344 1078697 - 1078687 - g 74 -6.8 -4.32919 | overlap 1078685 AAACGAGAAAAAAGA GCTG ATG CAGC CACAGATTGATGCCA TERM 1345 1079423 - 1079401 - g 76 -7 -4.48333 | AGACACCAATGAAAA CAACGGCGTT GCC AAGGCCATTG AAAAACACATTTTGA SSU98_1139 1078631 - 1079446 + | HAD superfamily hydrolase SSU98_1140 1079456 - 1080676 + | peptidase T TERM 1346 1080686 - 1080705 + F 100 -8.6 -5.60993 | opp_overlap 1080686 AAATAAAATTTCAAA CGGCTTTC AATA GAAAGTCG TTTTTTTCTGAAAAA SSU98_1141 1080804 - 1081202 + | hypothetical protein TERM 1347 1081237 - 1081210 - T 72 -7.6 -3.70722 | opp_overlap 1081214, overlap 1081214 TTGATTAATATACAA TCAAGCCCCCGC ACAC GCGGAGGCTTTT TTAAACGAATAGAAA TERM 1348 1081214 - 1081233 + T 100 -10.6 -5.0133 | opp_overlap 1081210 1081214 TTAATATACAATCAA GCCCCCGC ACAC GCGGAGGC TTTTTTAAACGAATA TERM 1349 1081233 - 1081214 - T 95 -12.8 -3.54503 | opp_overlap 1081214, overlap 1081210 TTAATATACAATCAA GCCCCCGC ACAC GCGGAGGC TTTTTTAAACGAATA SSU98_1142 1082152 - 1081238 - | permease TERM 1350 1081875 - 1081895 + g 86 -9.8 -3.91352 | opp_overlap 1081869 1081878, overlap 1081878 TGCATAAGACCGACG GAAGTCTG TTGAC CAGACTTC TTTGCTTCCCAGTAT SSU98_1143 1082283 - 1082579 + | transcriptional regulator SSU98_1144 1082929 - 1083708 + | hypothetical protein TERM 1351 1083792 - 1083756 - gf 75 -5.3 -4.72486 | opp_overlap 1083784 CAGAAACTCGAAAAA TATCTCAAAAACCTACC AAA AGAAGATTTTCAAGATA CCTTGGACTATTTCA SSU98_1145 1083720 - 1084298 + | hypothetical protein TERM 1352 1085039 - 1085018 - gT 100 -7.3 -5.46706 | ATTCCAAAACAAAAA CTGACATCC ATAT AGATGCCAG TCAAAATAATCTGGG SSU98_1146 1084240 - 1085139 + | hypothetical protein TERM 1353 1085150 - 1085167 + T 85 -6.9 -4.93454 | opp_overlap 1085150, overlap 1085145 GGTAATCGCTAAAAA GCCCTCC TCAC GGAAGGC TTTTCTATTTATTTA TERM 1354 1085167 - 1085150 - T 90 -9.1 -4.62471 | opp_overlap 1085150 1085145 GGTAATCGCTAAAAA GCCCTCC TCAC GGAAGGC TTTTCTATTTATTTA SSU98_1147 1085580 - 1085176 - | hypothetical protein SSU98_1148 1085980 - 1085555 - | transcriptional regulator TERM 1355 1085842 - 1085857 + gH 82 -7.6 -4.37067 | opp_overlap 1085836 1085844 CCTGCAAAGCCAACT GATGCA GGGG TGCATC TTTTAGTAATGTTTG TERM 1356 1086741 - 1086752 + G 70 -5.8 -4.37092 | CCTGATTAATGCAGG GGCA GTCA TGCC TTTTGTACCAGGGAT SSU98_1149 1086142 - 1086900 + | hypothetical protein SSU98_1150 1086904 - 1087356 + | hypothetical protein SSU98_1151 1087413 - 1087733 + | Co/Zn/Cd cation transporter SSU98_1152 1087763 - 1088191 + | Co/Zn/Cd cation transporter SSU98_1153 1088369 - 1088650 + | putative cation efflux transporter TERM 1357 1088692 - 1088658 - Tf 100 -10.2 -5.56673 | opp_overlap 1088658 ATCCATAATAAAAAA TAGGAATTTTCCCT GAATTAT AGGGAGAATTCCTA TTTTTTAACCTTCCT TERM 1358 1088658 - 1088692 + TF 100 -13.1 -5.10029 | opp_overlap 1088658 ATCCATAATAAAAAA TAGGAATTTTCCCTG AATTA TAGGGAGAATTCCTA TTTTTTAACCTTCCT TERM 1359 1088877 - 1088846 - Tf 91 -6.6 -5.40464 | opp_overlap 1088847, overlap 1088847 TATTATAAAGAAAAA GCCTCTACCCGAAT AAAT ATTTGAGTAGAGGT TTTAACTGAATGATA TERM 1360 1088876 - 1088847 - Tf 85 -10.1 -3.82652 | opp_overlap 1088847, overlap 1088846 ATTATAAAGAAAAAG CCTCTACCCGAAT AAAT ATTTGAGTAGAGG TTTTAACTGAATGAT TERM 1361 1088847 - 1088876 + TF 86 -10.1 -4.20084 | opp_overlap 1088846 1088847 ATTATAAAGAAAAAG CCTCTACCCGAAT AAAT ATTTGAGTAGAGG TTTTAACTGAATGAT TERM 1362 1088895 - 1088909 + TF 76 -4.2 -5.24515 | opp_overlap 1088893 TAACTGAATGATATT GCCC ATTGGCA GGGC TTTTATTTGTTTGTT SSU98_1155 1090213 - 1088933 - | hypothetical protein TERM 1363 1090212 - 1090198 - Gg 79 -8.6 -4.20768 | ATGTCCAATAAATAA TGGCTA CAA TAGCCA ATAAAACTCCTAAAG SSU98_1154 1090197 - 1090301 + | hypothetical protein SSU98_1156 1090782 - 1090294 - | putative 2-amino-4-hydroxy-6-hydroxymethylpteridine pyrophosphokinase SSU98_1158 1091140 - 1090655 - | dihydroneopterin aldolase SSU98_1157 1090874 - 1090779 - | hypothetical protein TERM 1364 1091058 - 1091043 - GR 86 -7.6 -4.68209 | AGGTCAACAAACAAA TCACAG TCAA CTGTGA AAATTTGACCAAGAA SSU98_1159 1091945 - 1091133 - | dihydropteroate synthase SSU98_1160 1092517 - 1091954 - | GTP cyclohydrolase I SSU98_1161 1092685 - 1093167 + | NTP pyrophosphohydrolase including oxidative damage repair enzymes TERM 1365 1093211 - 1093180 - T 100 -8 -5.5074 | opp_overlap 1093187 TAAGCTAATAAAAAA CGAAAAAGCCTTGG AAAT CCAGGGCTTCTTTG ATATTACAAATACTT TERM 1366 1093187 - 1093204 + T 81 -9.1 -4.08853 | opp_overlap 1093180 ATAAAAAACGAAAAA GCCTTGG AAAT CCAGGGC TTCTTTGATATTACA SSU98_1162 1093892 - 1093215 - | hypothetical protein SSU98_1163 1094622 - 1093879 - | SPX domain-containing protein SSU98_1164 1094815 - 1095102 + | hypothetical protein TERM 1367 1095145 - 1095126 - T 81 -7.2 -4.66537 | opp_overlap 1095126 1095121, overlap 1095121 TTTTGTAAGACAAAA GAGATGAC CGCA ATCATCTC TTTTCTTCTATTCTG TERM 1368 1095126 - 1095145 + T 82 -6.5 -4.92791 | opp_overlap 1095121 1095126, overlap 1095121 TTTTGTAAGACAAAA GAGATGA CCGCAA TCATCTC TTTTCTTCTATTCTG SSU98_1165 1095417 - 1095139 - | hypothetical protein TERM 1369 1095441 - 1095422 - R 82 -6.4 -5.00616 | CTTCCCTCCAAAAAA TCCCAGCC CGCT GACTAGGA TTTCACAAGATTTAC pheT 1097859 - 1095460 - | phenylalanyl-tRNA synthetase subunit beta SSU98_1167 1098397 - 1097861 - | histone acetyltransferase HPA2-like acetyltransferase TERM 1370 1098506 - 1098460 - R 76 -10.5 -2.63479 | gap 1, opp_overlap 1098472 AATAGTGCGAGATTA CGACGGTTCAAGGTTGAAAA CGACATAT TTTTCAACCTTGAACC-TAG TGAGGGGAGTAGGTA pheS 1099627 - 1098584 - | phenylalanyl-tRNA synthetase subunit alpha TERM 1371 1099681 - 1099646 - R 100 -11.9 -5.4505 | TCCTCCAATAAAAAA CGCATGACACCACTC GTATCG GAGCGTTGTCACGCG GTACCATCCGTTTTC TERM 1372 1100075 - 1100050 - R 82 -7.7 -4.37658 | gap 1, opp_overlap 1100050 AATCTTCCTAGAAAA CTCCC-TCTATC TAG GATAGAAAGGAG TTTAGTTTTATAGTT SSU98_1169 1101807 - 1100083 - | Beta-glucosidase-related glycosidase SSU98_1170 1103620 - 1101818 - | hypothetical protein TERM 1373 1103648 - 1103625 - R 100 -11.8 -5.00616 | gap 1, opp_overlap 1103624 1103623 TTTGCCTCCAAAAAA GCTAGAGG-GC ATA GCGCCTCTAGC CCTTCTCTAGTCGTC SSU98_1171 1104456 - 1103731 - | phosphatase SSU98_1172 1105295 - 1104456 - | D-mannonate oxidoreductase SSU98_1173 1106398 - 1105298 - | mannonate dehydratase TERM 1374 1106318 - 1106334 + g 70 -8 -3.61075 | overlap 1106333 GACTGCCGTTACGAT TCCCTG CATAC CAGGGA TTGCTTTAATCTCTT SSU98_1174 1107849 - 1106413 - | glucuronate isomerase SSU98_1175 1108447 - 1107815 - | 2-keto-3-deoxy-6-phosphogluconate aldolase TERM 1375 1108358 - 1108348 - GR 71 -6.8 -4.11371 | opp_overlap 1108348 GAATACCTCCCAAAA TCGC ATG GCGA GCGATCTCTTTCGCA TERM 1376 1108542 - 1108519 - R 100 -7.4 -5.59502 | opp_overlap 1108519 1108517 1108520 1108521, overlap 1108521 TAAAAAAGCAAAAAA TACCCAGAAG AATT CTTCTGGGCT GTCTATTTTTTATTT TERM 1377 1108520 - 1108541 + r 73 -8.7 -3.4376 | opp_overlap 1108519 1108521, overlap 1108519 1108517 1108521 AAAAAAGCAAAAAAT ACCCAGAAG AATT CTTCTGGGC TGTCTATTTTTTATT TERM 1378 1108521 - 1108540 + r 83 -12.2 -2.63816 | opp_overlap 1108519 1108521, overlap 1108520 1108519 1108517 AAAAAGCAAAAAATA CCCAGAAG AATT CTTCTGGG CTGTCTATTTTTTAT TERM 1379 1108540 - 1108521 - R 100 -12.2 -4.37346 | opp_overlap 1108521 1108520 1108519 1108517, overlap 1108519 AAAAAGCAAAAAATA CCCAGAAG AATT CTTCTGGG CTGTCTATTTTTTAT SSU98_1176 1108740 - 1108558 - | transcriptional regulator SSU98_1177 1108831 - 1108718 - | transcriptional regulator SSU98_1178 1109295 - 1108816 - | transcriptional regulator TERM 1380 1108958 - 1108942 - G 70 -7.9 -3.64703 | TTCGTCCGAGGCAAA CTGAGCG ACA CGCTCCG CAATTCTCGGTTCAA TERM 1381 1109040 - 1109057 + g 70 -7.7 -3.61506 | opp_overlap 1109040, overlap 1109040 CCAAAGAAAAACCTA GGGGATC CTCT GATCCTC CTTTTTTAGAGCTGA TERM 1382 1109040 - 1109058 + g 78 -5.3 -5.03715 | gap 1, opp_overlap 1109040, overlap 1109040 CCAAAGAAAAACCTA GG-GGATC CTCT GATCCTCC TTTTTTAGAGCTGAT SSU98_1179 1110270 - 1109398 - | Beta-galactosidase/beta-glucuronidase SSU98_1180 1111117 - 1110197 - | Beta-galactosidase/beta-glucuronidase SSU98_1181 1112197 - 1111250 - | ribokinase family sugar kinase TERM 1383 1111619 - 1111605 - G 73 -5.7 -4.51196 | opp_overlap 1111604 GCTAAACCTACAAAA GGAGA TAATT TCTCC CTCGCTTCTTCAAAA TERM 1384 1112204 - 1112177 - G 100 -12.8 -3.83026 | opp_overlap 1112176 1112177 1112179 GCCTCCTAGATGAAA GACCCAGCTGGA ATCC TCCAACTAGGTC GTTATTGTATTATTT SSU98_1182 1113068 - 1112214 - | hypothetical protein SSU98_1183 1113768 - 1113109 - | hypothetical protein TERM 1385 1113698 - 1113669 - G 74 -8.1 -4.02021 | gap 1, opp_overlap 1113668 1113671 AAGCAACCAAGTAAA TATTCGTCGATGAA TTG TTCATCG-CAAATA ATATGATTTGCCATA TERM 1386 1113840 - 1113857 + r 72 -4.1 -4.92363 | overlap 1113836 TATTCTAATATTCAT CAGATGA TTTG TCAACTG TTTTTGTAAATATTT TERM 1387 1113892 - 1113914 + r 73 -9.3 -2.83953 | opp_overlap 1113892, overlap 1113889 1113894 TTATACGCAAAAAAA GACGATTTT ACGTG AAAATCGTC TGATATATTTGATTT TERM 1388 1113914 - 1113892 - R 100 -9.3 -5.50499 | opp_overlap 1113892 1113889 1113894 TTATACGCAAAAAAA GACGATTTT ACGTG AAAATCGTC TGATATATTTGATTT SSU98_1184 1114794 - 1113955 - | hypothetical protein TERM 1389 1114200 - 1114220 + g 82 -10.5 -3.60805 | opp_overlap 1114217, overlap 1114202 TTGAAGTTTGGTCGT TAGCTTGGT TGG ACCAAGCTG TTTGAACTGCAATAT TERM 1390 1114202 - 1114218 + g 81 -10.9 -3.38224 | opp_overlap 1114217, overlap 1114200 GAAGTTTGGTCGTTA GCTTGGT TGG ACCAAGC TGTTTGAACTGCAAT TERM 1391 1114827 - 1114813 - R 73 -3.5 -5.14563 | CTCTCCATCAAAAAA GCAGG TCCAG CCTAC TTTCCTGTAAATTTA SSU98_1185 1115030 - 1114824 - | hypothetical protein SSU98_1186 1116291 - 1115008 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1392 1116592 - 1116568 - R 100 -10.1 -5.40004 | opp_overlap 1116566 CATGAAATTAAAAAA TGGAACTGAAC CAA GTTCAATCCCA TATAGATTAATGTTT SSU98_1187 1117015 - 1116599 - | F0F1-type ATP synthase, epsilon subunit SSU98_1188 1118470 - 1117025 - | F0F1 ATP synthase subunit beta SSU98_1189 1119329 - 1118451 - | F0F1 ATP synthase subunit gamma TERM 1393 1118591 - 1118608 + g 71 -7 -4.13767 | GCATGGCTGTCATAC CTGCTG CATTTT CAGCAG TTTTGGCATCCAAAA SSU98_1190 1120843 - 1119341 - | F0F1 ATP synthase subunit alpha TERM 1394 1120632 - 1120644 + g 76 -7.7 -4.07786 | opp_overlap 1120630 1120632 CCGAGAATGATAATA CCAAC ATC GTTGG TTTCTAAGTTTTGTG SSU98_1191 1121398 - 1120865 - | F0F1 ATP synthase subunit delta SSU98_1192 1121905 - 1121399 - | F0F1-type ATP synthase, subunit b TERM 1395 1121547 - 1121566 + g 71 -4.4 -4.88407 | gap 1, overlap 1121549 1121550 GCTTCACGTTTTTCA GCTTCAATT TCC AATTGA-GC TTTTTGCTTCAATCC SSU98_1193 1122177 - 1121923 - | F0F1-type ATP synthase, subunit a SSU98_1194 1122640 - 1122119 - | F0F1-type ATP synthase, subunit a TERM 1396 1122642 - 1122654 + r 74 -4.7 -4.87328 | AAATGTTCTTCCAAT GGAGG TTC CCCCC TTTTCTATTTCTCTA SSU98_1195 1122877 - 1122677 - | F0F1 ATP synthase subunit C TERM 1397 1123010 - 1122989 - R 79 -3.1 -5.45802 | opp_overlap 1122989, overlap 1122983 TTTGTAAAATAAAAA GAAAAGA GTATTTCA TCTTTTC TTCCTATTTAATAGC SSU98_1196 1124057 - 1123014 - | putative lipid kinase ligA 1126026 - 1124068 - | NAD-dependent DNA ligase LigA TERM 1398 1125950 - 1125924 - G 74 -8.1 -3.99405 | opp_overlap 1125924 CTAATTCACGATAAA GCGTATCATAT TCTGC ATCTGATACGC TAGGTTGGTCCAATT SSU98_1198 1126149 - 1126295 + | hypothetical protein TERM 1399 1126471 - 1126461 - g 73 -5.4 -4.66163 | ACTCTTACCTAAAAA CAAG TTT CTTG CCATTCTATTTGGAA SSU98_1199 1126297 - 1127202 + | permease SSU98_1200 1127199 - 1128014 + | hypothetical protein TERM 1400 1128813 - 1128793 - g 74 -7.6 -4.07568 | opp_overlap 1128786 TCTGGCGCCTTAAAA GACATGGT GCAAA ACCATGCC CTTCAAGTTCTTTCC SSU98_1201 1128094 - 1129581 + | glucose-6-phosphate 1-dehydrogenase TERM 1401 1129689 - 1129670 - f 82 -12.2 -2.53263 | opp_overlap 1129666 1129665 1129673, overlap 1129673 CTTATTTCCAACCTA GAACAGCC TCTA GGCTGTTC TAGCAACCTGCACCT TERM 1402 1129673 - 1129686 + F 70 -8.1 -3.29511 | opp_overlap 1129673 1129670, overlap 1129666 1129665 ATTTCCAACCTAGAA CAGCC TCTA GGCTG TTCTAGCAACCTGCA TERM 1403 1129686 - 1129673 - f 70 -8.1 -3.42056 | opp_overlap 1129666 1129665 1129673, overlap 1129670 ATTTCCAACCTAGAA CAGCC TCTA GGCTG TTCTAGCAACCTGCA TERM 1404 1129762 - 1129749 - f 82 -6.7 -5.05601 | opp_overlap 1129749, overlap 1129743 GACTACATATAAAAA CTGGA GCAA TCCAG TTTTTTTGGGAGATA TERM 1405 1129749 - 1129762 + F 91 -6.7 -5.41143 | opp_overlap 1129743 1129749 GACTACATATAAAAA CTGGA GCAA TCCAG TTTTTTTGGGAGATA TERM 1406 1129843 - 1129811 - g 93 -12.7 -3.06302 | opp_overlap 1129810 1129809 ATCATTCTCACCCAA CTTGAAGTAGCCAGC CAT GCTGGCACCCTCAAG CGTTATGAAAAAATT SSU98_1202 1129781 - 1130455 + | hypothetical protein SSU98_1203 1130457 - 1131014 + | acetyltransferase TERM 1407 1131031 - 1131007 - T 100 -13.7 -5.08178 | opp_overlap 1131007 ATACAGATAGAAAAA GTCGCTAGTTC ATT GAACTAACGAC TTTTTTCTATACCAA TERM 1408 1131007 - 1131031 + T 100 -11.5 -5.36441 | opp_overlap 1131007 ATACAGATAGAAAAA GTCGCTAGTTC ATT GAACTAACGAC TTTTTTCTATACCAA SSU98_1204 1132324 - 1131038 - | Signal recognition particle GTPase TERM 1409 1132059 - 1132069 + g 77 -8.2 -3.9693 | GCTTCCTTCACTCGA GCCG CAG CGGC TTCTTTGGCTGCATA TERM 1410 1132255 - 1132276 + g 100 -3.8 -5.93809 | gap 1, opp_overlap 1132258, overlap 1132258 TTTCCACTTCTTCAA CAAGAGCGA CTTGC TC-CTCTTG TTTTTTTTGTCCAAA SSU98_1205 1133126 - 1132314 - | HAD superfamily hydrolase TERM 1411 1132617 - 1132627 + g 73 -5.4 -4.72486 | GAAACGCTCGTGAAG TTCC GCA GGAA TTTTTGGAATTTGTC TERM 1412 1133034 - 1133046 + g 75 -3.3 -5.14645 | overlap 1133035 TCCACGCTCACGCGC TGCCT GCA AGGCC TTTTTATTAGCTTCT SSU98_1206 1133925 - 1133116 - | HAD superfamily hydrolase TERM 1413 1133561 - 1133551 - G 70 -5.4 -4.57073 | opp_overlap 1133551 CATCGCTTCTAAAAA CTGA GGC TCAG CATTTTTTAATAAAT SSU98_1207 1137455 - 1133922 - | chromosome segregation ATPase TERM 1414 1135744 - 1135754 + g 75 -2.4 -5.27335 | opp_overlap 1135734 GGTAAGAAGGTTGCC CGTC CTT GCCG TTTTTCTTTCAAAAA TERM 1415 1136416 - 1136430 + g 70 -5.7 -4.3014 | GAACTATCTAATTGC GCAAG CGTTT CTTGC TTTTGCTCAATCTGT TERM 1416 1136484 - 1136495 + g 70 -7.2 -3.75105 | CAACAAGTTTTCCAA GCGC GCCT GCGC TTCTTGATGACTTGA SSU98_1208 1138144 - 1137458 - | dsRNA-specific ribonuclease TERM 1417 1139003 - 1138989 - g 82 -2.1 -5.65177 | ATACCGACAAAAAAA CAAAC TACTT GTCTG CACAGCCCTTTTAGC SSU98_1209 1138333 - 1139322 + | hypothetical protein TERM 1418 1139353 - 1139333 - T 73 -3.3 -5.13016 | opp_overlap 1139349, overlap 1139335 1139337 1139340 AATGAAAATCAAAAA CAGACTA GCTCCAA CAGTCTG GCAATAGACTGTTGG TERM 1419 1139374 - 1139337 - T 91 -11.4 -3.64947 | opp_overlap 1139349, overlap 1139333 1139335 1139340 AAAATCAAAAACAGA CTAGCTCCAACAGTCT GGCAAT AGACTGTTGGAGGTCG GAAATTAGACGAACT TERM 1420 1139371 - 1139340 - T 82 -11.7 -2.90234 | opp_overlap 1139349, overlap 1139333 1139337 1139335 ATCAAAAACAGACTA GCTCCAACAGTCT GGCAAT AGACTGTTGGAGG TCGGAAATTAGACGA TERM 1421 1139564 - 1139535 - T 76 -5.8 -4.58466 | opp_overlap 1139537 1139538, overlap 1139538 GGTATAAGCACAAAA GAACCTTGTAAG ATCTAA CTTACAAGGCTT TTTTTACAAATCAAA TERM 1422 1139537 - 1139562 + T 89 -6.2 -5.42259 | opp_overlap 1139535 1139538, overlap 1139538 TATAAGCACAAAAGA ACCTTGTAAG ATCTAA CTTACAAGGC TTTTTTTACAAATCA TERM 1423 1139561 - 1139538 - T 91 -9.7 -4.39226 | opp_overlap 1139537 1139538, overlap 1139535 ATAAGCACAAAAGAA CCTTGTAAG ATCTAA CTTACAAGG CTTTTTTTACAAATC TERM 1424 1139538 - 1139561 + T 85 -9.7 -3.84633 | opp_overlap 1139538 1139535, overlap 1139537 ATAAGCACAAAAGAA CCTTGTAAG ATCTAA CTTACAAGG CTTTTTTTACAAATC SSU98_1210 1140614 - 1139568 - | transcriptional regulator SSU98_1211 1141912 - 1140620 - | lantibiotic efflux protein TERM 1425 1141964 - 1141982 + r 89 -6.2 -5.41143 | opp_overlap 1141964 1141963 CAATAAAGTCAATAT TTAATTTT ATA AAAATTAA TTTTTTTAAACGGTA TERM 1426 1142097 - 1142059 - R 73 -9 -3.43437 | opp_overlap 1142065 1142092, overlap 1142065 1142070 GAGAAAACTGCATAA CATCAACAGAATTTAGTC TCA GACTAAGTTCTGTTTTTG ACTAAAAATGTTGAT TERM 1427 1142091 - 1142065 - R 82 -11 -3.42013 | opp_overlap 1142065, overlap 1142059 1142070 ACTGCATAACATCAA CAGAATTTAGTC TCA GACTAAGTTCTG TTTTTGACTAAAAAT TERM 1428 1142065 - 1142091 + r 100 -13.2 -4.66163 | opp_overlap 1142065 1142059 1142070 ACTGCATAACATCAA CAGAATTTAGTC TCA GACTAAGTTCTG TTTTTGACTAAAAAT SSU98_1212 1143427 - 1142264 - | hypothetical protein TERM 1429 1143128 - 1143156 + g 73 -5.3 -4.68593 | overlap 1143114 TGTTCTCGAATCTGA GAGCTTAACTTCA TAA TCAAGCTGAGCTC TTTTTGCGTAGTAGA TERM 1430 1143538 - 1143553 + H 84 -4.8 -5.27206 | AATTTACTAATTTTT TTAAAC ACTT GTTTAA TTTTTCTTCTGTCTG TERM 1431 1143641 - 1143664 + H 100 -7.4 -5.79595 | opp_overlap 1143642 1143643, overlap 1143643 GAGAGGTCGGAGAAA AGGCTCCCTA GTTT TAGGGAGCTA TTTTTTGTTTTCCCA TERM 1432 1143663 - 1143642 - H 90 -8.7 -4.38154 | opp_overlap 1143641 1143643, overlap 1143643 AGAGGTCGGAGAAAA GGCTCCCTA GTTT TAGGGAGCT ATTTTTTGTTTTCCC TERM 1433 1143662 - 1143643 - H 87 -12.2 -3.2241 | opp_overlap 1143641 1143643, overlap 1143642 GAGGTCGGAGAAAAG GCTCCCTA GTTT TAGGGAGC TATTTTTTGTTTTCC TERM 1434 1143643 - 1143662 + H 100 -12.2 -4.53077 | opp_overlap 1143643 1143642, overlap 1143641 GAGGTCGGAGAAAAG GCTCCCTA GTTT TAGGGAGC TATTTTTTGTTTTCC TERM 1435 1144785 - 1144763 - g 76 -7 -4.56597 | GCTGCGCGCGAAAAA GCAGAGCT GACAACT AGCCCTGC CCTTGCTATTCAGTT SSU98_1213 1143695 - 1145197 + | hypothetical protein TERM 1436 1145237 - 1145198 - T 100 -13.8 -3.89607 | opp_overlap 1145209, overlap 1145201 1145209 TATCAGAAAAACTAA GCACACAAAAAGACTTGC TCCG ACAAGTCTTTTTGTGAAC AGTAAAAAAGCAAGG TERM 1437 1145234 - 1145201 - T 100 -16.3 -2.99987 | opp_overlap 1145209, overlap 1145198 1145209 CAGAAAAACTAAGCA CACAAAAAGACTTGC TCCG ACAAGTCTTTTTGTG AACAGTAAAAAAGCA TERM 1438 1145209 - 1145226 + T 75 -5.6 -4.83615 | opp_overlap 1145209 1145201 1145198 CTAAGCACACAAAAA GACTTG CTCCGA CAAGTC TTTTTGTGAACAGTA TERM 1439 1145226 - 1145209 - T 80 -6.3 -5.04175 | opp_overlap 1145209, overlap 1145201 1145198 CTAAGCACACAAAAA GACTTGC TCCG ACAAGTC TTTTTGTGAACAGTA TERM 1440 1145266 - 1145247 - T 86 -5.7 -5.27779 | opp_overlap 1145247, overlap 1145239 GTGAACAGTAAAAAA GCAAGGA TTCAAT TCCCTGC TTTTTTCAACGATTA TERM 1441 1145247 - 1145266 + T 70 -3.5 -5.03145 | opp_overlap 1145239 1145247 GTGAACAGTAAAAAA GCAAGGA TTCAAT TCCCTGC TTTTTTCAACGATTA SSU98_1214 1147012 - 1145279 - | phosphoenolpyruvate-protein kinase TERM 1442 1146895 - 1146844 - G 80 -9.7 -3.71848 | gap 2, opp_overlap 1146850, overlap 1146846 1146850 CGTTCTCACGAATAA CAGAAAGCTCGTTTTGAGATGCTTC TAGA GCAGCATC-CAAA-CGAGCTTCCTC TGCATTTGTATCTTC TERM 1443 1146893 - 1146846 - G 100 -12.3 -3.44284 | gap 2, opp_overlap 1146850, overlap 1146844 1146850 TTCTCACGAATAACA GAAAGCTCGTTTTGAGATGCTTC TAGA GCAGCATC-CAAA-CGAGCTTCC TCTGCATTTGTATCT TERM 1444 1146889 - 1146850 - G 88 -9.5 -4.3587 | gap 2, opp_overlap 1146850, overlap 1146846 1146844 CACGAATAACAGAAA GCTCGTTTTGAGATGCTTC TAGA GCAGCATC-CAAA-CGAGC TTCCTCTGCATTTGT TERM 1445 1146850 - 1146889 + g 74 -9.5 -3.31598 | gap 2, opp_overlap 1146850 1146846 1146844 CACGAATAACAGAAA GCTCGTTTTGAGATGCTTC TAGA GCAGCATC-CAAA-CGAGC TTCCTCTGCATTTGT SSU98_1215 1147280 - 1147017 - | phosphocarrier protein HPr TERM 1446 1147354 - 1147373 + r 84 -4.4 -5.59564 | overlap 1147356 GGACATTATACCACT TTTTGAAA TCAT TTTCAAGA TTTTTTTACCTTTCT SSU98_1216 1148617 - 1147436 - | isocitrate dehydrogenase TERM 1447 1147835 - 1147825 - G 73 -5.4 -4.63218 | CCGGCGCCAATAAAA TCTG CTG CAGA AAGTTATCCGCAATA SSU98_1218 1149738 - 1148620 - | methylcitrate synthase SSU98_1217 1149465 - 1149605 + | hypothetical protein SSU98_1219 1152050 - 1149735 - | aconitate hydratase SSU98_1220 1152405 - 1152016 - | aconitase A SSU98_1221 1152848 - 1153009 + | glutaredoxin-like protein SSU98_1222 1153042 - 1155201 + | ribonucleotide-diphosphate reductase subunit alpha SSU98_1223 1155247 - 1155441 + | hypothetical protein TERM 1448 1155641 - 1155624 - g 70 -2.7 -5.06816 | opp_overlap 1155624 ACTGCTGAAGAAAAA GACCT GGTTGGTA AGGTC TTTGGCGGATTGACC nrdF 1155468 - 1156427 + | ribonucleotide-diphosphate reductase subunit beta TERM 1449 1156488 - 1156516 + T 84 -10.2 -3.68936 | TTGTTTATCTTTGAC GTGAGGCTGGGC AAAAA GCCCAGCGCCAC TTCTTAGAGTTCGTG TERM 1450 1156757 - 1156723 - T 100 -9.5 -4.84761 | opp_overlap 1156723 AGATTGGCATAAAAA TAGGAATTCTCCC ACCAGTTAA GGGAAAATTCCTA TTTTTTGTATATATT TERM 1451 1156723 - 1156757 + T 100 -7.3 -5.46276 | opp_overlap 1156723 AGATTGGCATAAAAA TAGGAATTCTCCC ACCAGTTAA GGGAAAATTCCTA TTTTTTGTATATATT SSU98_1225 1157864 - 1156863 - | transcriptional regulator SSU98_1226 1159937 - 1157961 - | hypothetical protein TERM 1452 1159928 - 1159894 - G 76 -7.9 -4.07687 | gap 2, overlap 1159897 ATCGCTTCTCCAAAA GAAGAGAGG--CTGGGC AAA GCCCAGATCCACTCCTC AAAGTTCATATCAAT SSU98_1227 1160847 - 1160197 - | hyaluronidase TERM 1453 1160284 - 1160304 + g 70 -9.7 -2.52234 | overlap 1160283 1160300 TAAACTTGCTTCTTC TCCTGTCTG GGG CAGACGGGG CTTACTCGACTTTGT SSU98_1228 1161594 - 1160893 - | hyaluronidase SSU98_1229 1162153 - 1161662 - | hyaluronidase SSU98_1230 1163718 - 1162150 - | hyaluronidase TERM 1454 1163835 - 1163812 - R 83 -9 -4.22554 | opp_overlap 1163812 1163815 GGAGGCAAGAAAGAA GAACTACTTC GTAA AAAGTAGTTC TTTGGCTTTTCCCAT TERM 1455 1163812 - 1163835 + r 77 -8.3 -3.93061 | opp_overlap 1163812, overlap 1163815 GGAGGCAAGAAAGAA GAACTACTT CGTAAA AAGTAGTTC TTTGGCTTTTCCCAT SSU98_1231 1164123 - 1163815 - | preprotein translocase subunit YajC SSU98_1232 1164945 - 1164130 - | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID SSU98_1233 1165708 - 1164932 - | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC SSU98_1234 1166218 - 1165727 - | phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB SSU98_1235 1167433 - 1166228 - | hypothetical protein TERM 1456 1166273 - 1166259 - G 71 -4.2 -4.8543 | overlap 1166260 CAATCTTTATAAAAA CGAAGC AAA GCTTCT AAGTAATAATAATCG SSU98_1236 1167864 - 1167430 - | phosphotransferase system, mannose/fructose-specific component IIA TERM 1457 1167913 - 1167938 + r 82 -7.7 -4.3739 | opp_overlap 1167917, overlap 1167914 CACTTTGTATTGTAG ACTATTGACAA CCAC TTGTCAATAGA TTTTATAAAAAAATG TERM 1458 1167914 - 1167937 + r 80 -11.2 -3.22113 | opp_overlap 1167917, overlap 1167913 ACTTTGTATTGTAGA CTATTGACAA CCAC TTGTCAATAG ATTTTATAAAAAAAT TERM 1459 1168117 - 1168069 - R 100 -15.5 -3.01791 | overlap 1168091 ATTTCCCCTGTAACA TCTCACTTTCTCCCACATTCAAC CCC GTTGGAGGCAGGAGAAAGTGAAA ACGTTAAAAATACAG SSU98_1237 1168819 - 1168151 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase SSU98_1238 1169804 - 1168803 - | ribokinase family sugar kinase SSU98_1239 1170462 - 1169821 - | hypothetical protein SSU98_1240 1171328 - 1170513 - | gluconate 5-dehydrogenase TERM 1460 1171350 - 1171374 + r 70 -8.1 -3.31365 | overlap 1171353 1171365 AACTCCCTTGTATTT TAATTTGTAAA GCG TTTACAAATTG TATTGTAATATAGTA TERM 1461 1171353 - 1171371 + r 72 -7.6 -3.78879 | overlap 1171350 1171365 TCCCTTGTATTTTAA TTTGTAAA GCG TTTACAAA TTGTATTGTAATATA TERM 1462 1171796 - 1171770 - R 100 -11 -5.64421 | ACTCTAAATAAAAAA TACCCTATTGCA ACG TGCAACAAGGTA CCATCTATCTCAATC TERM 1463 1171875 - 1171889 + r 80 -8.6 -3.91716 | overlap 1171872 TACTTCGACGAGCGA GGAAAC GTC GTTTCC TTATTTCCAACCTAG TERM 1464 1172286 - 1172334 + r 100 -16.3 -3.22774 | opp_overlap 1172305 1172308 1172332, overlap 1172305 1172333 CAAACATTATTTCAA TCCTTATTTCTGTCCAAATTCAC CCA GTGATTTGGGATAGAAATAGGGA TTCCTCATCGCTCTG SSU98_1241 1173344 - 1172400 - | transposase SSU98_1242 1174099 - 1173269 - | metal-dependent membrane protease SSU98_1243 1174426 - 1174109 - | hypothetical protein SSU98_1244 1175164 - 1174436 - | hypothetical protein SSU98_1245 1175369 - 1175151 - | hypothetical protein SSU98_1246 1176137 - 1175379 - | hypothetical protein SSU98_1247 1176349 - 1176134 - | Cro/CI family transcriptional regulator TERM 1465 1176363 - 1176387 + r 75 -7.2 -4.21343 | overlap 1176365 ATAAATTTTCCTTTC TAGGCTTGGT AGATA ATCAAGCCTG TTTCTGTGTCTTCGA TERM 1466 1176365 - 1176385 + r 72 -7.6 -3.6979 | overlap 1176363 AAATTTTCCTTTCTA GGCTTGGT AGATA ATCAAGCC TGTTTCTGTGTCTTC SSU98_1248 1176928 - 1176362 - | surface antigen negative regulator Par SSU98_1249 1177130 - 1176918 - | hypothetical protein TERM 1467 1177099 - 1177089 - G 71 -4 -4.8083 | opp_overlap 1177089 GAAGAGTACGAAAAA TAGT AGG ACTA CTTTCACTCCGTTTT SSU98_1250 1177338 - 1177114 - | hypothetical protein SSU98_1251 1177548 - 1177372 - | hypothetical protein TERM 1468 1177768 - 1177744 - R 78 -6.5 -4.65168 | opp_overlap 1177743 1177744 ATTACATGCCAAAAA CTTTTTTACCC CAT GGATAAAAGAG GTTATTGAGCGATTA alaS 1180402 - 1177910 - | alanyl-tRNA synthetase TERM 1469 1178118 - 1178134 + g 100 -13.7 -5.27335 | opp_overlap 1178110 1178112 1178115, overlap 1178116 TTGAAGACATCACCA GCAGCGG CTG CCGCTGC TTTTTCTTTCAGAGC TERM 1470 1180445 - 1180484 + r 70 -3.1 -5.01732 | gap 2, opp_overlap 1180450 1180454, overlap 1180450 GGCGACTGAAAAATA GG-AAACTGAC-AGGAAAT CTTG ATTTCCTAGGCAGTTTATC TTTTTTCCGAGCCTT TERM 1471 1180450 - 1180478 + r 73 -5.4 -4.64992 | gap 1, opp_overlap 1180450 1180454, overlap 1180445 CTGAAAAATAGGAAA CTGAC-AGGAAAT CTTG ATTTCCTAGGCAG TTTATCTTTTTTCCG SSU98_1253 1180993 - 1180682 - | hypothetical protein SSU98_1254 1181183 - 1181001 - | hypothetical protein SSU98_1255 1182338 - 1181571 - | parvulin-like peptidyl-prolyl isomerase SSU98_1256 1183259 - 1182543 - | O-methyltransferase TERM 1472 1183177 - 1183194 + g 71 -4.1 -4.85129 | TTGACAACCGGACGG CGCATAT TGTG ATTTGCG TTTTTACTATATGAT TERM 1473 1183285 - 1183270 - R 76 -6.8 -4.43213 | opp_overlap 1183270 CTCAATACACTAAAA GGTAGG TTTC CCCACC TTTTCTCTACATATT SSU98_1257 1183838 - 1183413 - | hypothetical protein TERM 1474 1183565 - 1183551 - G 76 -2.8 -5.29385 | AAGGCAATCAAAAAA GTAGAT AAA ATCTTC AAGATTGTCCTTATA SSU98_1258 1184318 - 1183854 - | hypothetical protein SSU98_1259 1186098 - 1184296 - | oligoendopeptidase F TERM 1475 1185969 - 1185980 + g 75 -3 -5.22039 | CCAGTAAATGACCTG CAAA TTCT TTTG TTTTTTCAGTTTCAG TERM 1476 1186162 - 1186136 - R 100 -7.2 -5.47159 | opp_overlap 1186136 1186137, overlap 1186137 TTCTAACATAAAAAA TCCCCTCTTTCC AAC GGAAAGTGAGGG CTTATAGGTTACTTA TERM 1477 1186161 - 1186137 - R 88 -10.7 -3.87211 | opp_overlap 1186137 1186136, overlap 1186136 TCTAACATAAAAAAT CCCCTCTTTCC AAC GGAAAGTGAGG GCTTATAGGTTACTT SSU98_1260 1187270 - 1186329 - | competence protein TERM 1478 1187304 - 1187322 + r 71 -7.4 -3.8374 | opp_overlap 1187304 TAGTTCGTAAAAAAA CACCCAGT TTA ACTGAGTG TTTGAAATTTTTTAC TERM 1479 1187322 - 1187304 - R 100 -9.6 -5.41143 | opp_overlap 1187304 TAGTTCGTAAAAAAA CACCCAGT TTA ACTGAGTG TTTGAAATTTTTTAC SSU98_1261 1189337 - 1187334 - | methionyl-tRNA synthetase TERM 1480 1187692 - 1187702 + g 75 -3.2 -5.19251 | AGTTCCACGTCAGCT GGGT TCC ACTC TTTTTCTTCCTCTTG SSU98_1262 1189493 - 1190086 + | hypothetical protein SSU98_1263 1190232 - 1190137 - | hypothetical protein TERM 1481 1190327 - 1190299 - H 73 -5.5 -4.60797 | opp_overlap 1190308 TCCTTATATATAAAA TATTCAGAATTTA CTG TAAATTCTACATA AAATCATGGATATTG SSU98_1264 1190387 - 1191424 + | phospho-2-dehydro-3-deoxyheptonate aldolase SSU98_1265 1191434 - 1192459 + | phospho-2-dehydro-3-deoxyheptonate aldolase aroE 1192505 - 1193374 + | shikimate 5-dehydrogenase TERM 1482 1193566 - 1193579 + G 70 -5.3 -4.50298 | overlap 1193550 AAGCTTAGAACAAGC TGGTT TTGA AACCA TTGTTTTTGAATTTC aroB 1193387 - 1194454 + | 3-dehydroquinate synthase TERM 1483 1194619 - 1194653 + T 100 -7.3 -5.626 | opp_overlap 1194622, overlap 1194622 TGACGATATAAGAAA AAAGACTACTGACTT GCATG AAATCAGTAGTCTTA TTTTTTTATAAAATC TERM 1484 1194650 - 1194622 - T 100 -11.2 -5.60689 | opp_overlap 1194619 1194622 CGATATAAGAAAAAA GACTACTGACTT GCATG AAATCAGTAGTC TTATTTTTTTATAAA TERM 1485 1194622 - 1194650 + T 100 -9 -4.89054 | opp_overlap 1194622, overlap 1194619 CGATATAAGAAAAAA GACTACTGACTT GCATG AAATCAGTAGTC TTATTTTTTTATAAA SSU98_1268 1195459 - 1194659 - | ABC-type uncharacterized transport system, ATPase component SSU98_1269 1196362 - 1195469 - | ABC-type uncharacterized transport system, permease component TERM 1486 1196023 - 1196055 + g 88 -9.9 -4.20696 | opp_overlap 1196034, overlap 1196024 TCACTAGAGTTTCTT GCTTAAGCAGAGCCA CAT TGGCTTTGCCTAAGA TTTTCAAGTTGATGG TERM 1487 1196024 - 1196054 + g 100 -13.4 -3.11936 | opp_overlap 1196034, overlap 1196023 CACTAGAGTTTCTTG CTTAAGCAGAGCCA CAT TGGCTTTGCCTAAG ATTTTCAAGTTGATG SSU98_1270 1197391 - 1196417 - | hypothetical protein SSU98_1271 1198374 - 1197415 - | ABC transporter permease protein TERM 1488 1198443 - 1198414 - R 100 -13 -4.61162 | opp_overlap 1198409 1198414 ATAGCAAACAAGAAA GGACCGCTTAGA CTACAC TCTAAACGGTCC TTATATTTCATCTGT TERM 1489 1198414 - 1198443 + r 89 -10.8 -3.89041 | opp_overlap 1198414, overlap 1198409 ATAGCAAACAAGAAA GGACCGCTTAGA CTACAC TCTAAACGGTCC TTATATTTCATCTGT SSU98_1272 1198987 - 1198868 - | hypothetical protein TERM 1490 1199075 - 1199056 - R 80 -6.4 -4.85599 | TTGATGTTACAAAAA GTCTGAAC CTAA GCCCAGAC CCTACTAAAACAATT SSU98_1273 1200120 - 1199089 - | tagatose 1,6-diphosphate aldolase SSU98_1274 1201306 - 1200113 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1491 1201452 - 1201398 - R 86 -5.3 -5.3236 | gap 2, overlap 1201387 AGAAGGTAGAAAAAA GAGTTCTTACTGCCCTAAGTACCGTTT CTG AATCTGTACTTGGAG-A-TAAGAACTC TACGTAAGCAGTGTA SSU98_1275 1201859 - 1201521 - | hypothetical protein TERM 1492 1201637 - 1201651 + g 78 -4.3 -5.13722 | TTCCCTGAACTTTCT TGTTG AAATC CAACA TTTTCTTTTGGTCAG SSU98_1276 1202972 - 1201869 - | prephenate dehydrogenase TERM 1493 1202836 - 1202848 + g 70 -7.7 -3.6501 | overlap 1202837 TCATCAACCATCCCC TTGCC CAA GGCAA TTTGGCATGATTGTT SSU98_1277 1204146 - 1202980 - | chorismate synthase aroD 1204824 - 1204150 - | 3-dehydroquinate dehydratase SSU98_1279 1205984 - 1204821 - | SAM-dependent methyltransferase TERM 1494 1205617 - 1205607 - G 75 -5.4 -4.76087 | GACAGAATAAATAAA GGTA TTA TACC ATGAAAAAACTGCGT TERM 1495 1206129 - 1206109 - g 70 -2.5 -5.03314 | overlap 1206113 TTTATTGTGAAAAAA CTAATTGAC TAT GTCAAGAAG AGCGGACAGACTAGA SSU98_1280 1206100 - 1208280 + | phosphoglycerol transferase/alkaline phosphatase superfamily protein TERM 1496 1208336 - 1208288 - T 84 -12.2 -2.75826 | opp_overlap 1208293, overlap 1208293 CACGGTAATACACTA TAAAAGGCTTAGAATC-ATGTCAG TTA CT-ACATTGATTCTAAGCCTTTTT ATACTCAATGAAAAT TERM 1497 1208293 - 1208331 + T 100 -12.1 -4.9218 | opp_overlap 1208288 1208293 TAATACACTATAAAA GGCTTAGAATC-ATGTCAG TTA CT-ACATTGATTCTAAGCC TTTTTATACTCAATG TERM 1498 1208331 - 1208293 - T 100 -12.1 -4.5477 | opp_overlap 1208293, overlap 1208288 TAATACACTATAAAA GGCTTAGAATC-ATGTCAG TTA CT-ACATTGATTCTAAGCC TTTTTATACTCAATG SSU98_1281 1211007 - 1208476 - | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit TERM 1499 1211294 - 1211261 - R 81 -9.1 -4.09864 | opp_overlap 1211260 1211261 1211265, overlap 1211265 AGCTACTTTCCAAAA TAAAGAACCTGGT TCATCACT ACCAAGTTCTTTA CATTTTTATACTTAT TERM 1500 1211290 - 1211265 - R 73 -5.5 -4.65263 | opp_overlap 1211261 1211260 1211265, overlap 1211261 ACTTTCCAAAATAAA GAACCTGGT TCATCACT ACCAAGTTC TTTACATTTTTATAC rplT 1211665 - 1211306 - | 50S ribosomal protein L20 rpmI 1211909 - 1211709 - | 50S ribosomal protein L35 TERM 1501 1211925 - 1211935 + r 75 -5.4 -4.77122 | overlap 1211920 GTTAATTCTCCTTTT GCTT AAA AAGC TTATTTTTTATCTGA infC 1212442 - 1211936 - | translation initiation factor IF-3 TERM 1502 1212518 - 1212498 - R 100 -11.9 -4.38116 | TCGAGAAAAACGAAA CGGACTTGC TAA ACAAGTCCG CACTACACCATTATT cmk 1213315 - 1212638 - | cytidylate kinase SSU98_1287 1213801 - 1213325 - | hypothetical protein TERM 1503 1213932 - 1213945 + Gr 77 -4.5 -5.00884 | ATTCGATTATGATGA CGACG GTAT CGTTG TTTTTTCAGACGACT SSU98_1286 1213786 - 1214046 + | ferredoxin SSU98_1288 1214490 - 1214035 - | hypothetical protein TERM 1504 1214579 - 1214558 - R 100 -8.1 -5.67063 | opp_overlap 1214556 1214558 TCTAGCACAAAAAAA GAGATTTTC CTAT GAAAACCTC TATCTTTTGAAATTT SSU98_1289 1215476 - 1214727 - | cell wall biosynthesis glycosyltransferase SSU98_1290 1215822 - 1215466 - | hypothetical protein SSU98_1291 1216538 - 1215822 - | cell wall biosynthesis glycosyltransferase SSU98_1292 1217895 - 1216642 - | glycosyltransferase SSU98_1293 1219955 - 1217895 - | lipopolysaccharide biosynthesis protein TERM 1505 1218968 - 1218952 - G 76 -8.1 -4.11216 | overlap 1218964 TCTCTAGTTTTAAAA TCTTCTA ATA TAGAAGA CACCACTTCGATCGG SSU98_1294 1220945 - 1219965 - | cell wall biosynthesis glycosyltransferase SSU98_1295 1221952 - 1220948 - | lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases SSU98_1296 1223339 - 1221960 - | hypothetical protein SSU98_1298 1224524 - 1223550 - | polysaccharide/teichoic acid transporter, putative SSU98_1297 1224092 - 1224256 + | hypothetical protein SSU98_1299 1225330 - 1224557 - | polysaccharide biosynthesis protein SSU98_1300 1226326 - 1225616 - | polysaccharide biosynthesis protein TERM 1506 1226137 - 1226123 - G 73 -10 -3.03657 | overlap 1226119 1226122 1226125 GATAAAAAAATCAAT CAGTCG TTC CGACTG TAAATATTGTACTAT SSU98_1301 1227523 - 1226579 - | ABC-type polysaccharide/polyol phosphate transport system, ATPase component SSU98_1302 1228329 - 1227523 - | ABC-type polysaccharide/polyol phosphate export system, permease component TERM 1507 1227980 - 1227966 - G 72 -7.2 -3.99432 | CAAATACAAACACAA CCATTA AGT TAATGG CGTAATTAATTGCAG SSU98_1303 1228547 - 1228332 - | cell wall biosynthesis glycosyltransferase SSU98_1304 1229260 - 1228619 - | polysaccharide biosynthesis protein/putative rhamnosyl transferase TERM 1508 1229276 - 1229291 + r 70 -3.2 -5.02476 | TGTAAAAATAATTCC TCGTAC TCTT GGACGA TTTTTTCCCAGGTGT SSU98_1305 1230405 - 1229257 - | glycosyltransferase SSU98_1306 1230607 - 1231392 + | hypothetical protein TERM 1509 1232109 - 1232119 + GT 73 -5.4 -4.62471 | opp_overlap 1232109 TTTATACAGAATGAA TCAC AGA GTGA TTTTTCAAACTTACA SSU98_1307 1231329 - 1233167 + | phosphoglycerol transferase/alkaline phosphatase superfamily protein TERM 1510 1233174 - 1233201 + T 100 -15 -4.4767 | opp_overlap 1233174 TATGAGTGATAAAAA TAGCCTTGCTCG GTTT TGAGCAAGGCTA TTTTATCATCAATCA TERM 1511 1233201 - 1233174 - T 100 -14.3 -4.88736 | opp_overlap 1233174 TATGAGTGATAAAAA TAGCCTTGCTC GGTTTT GAGCAAGGCTA TTTTATCATCAATCA SSU98_1308 1233613 - 1233227 - | muramidase (flagellum-specific) SSU98_1309 1236840 - 1233733 - | N-acetylmuramoyl-L-alanine amidase SSU98_1310 1237996 - 1236878 - | hypothetical protein SSU98_1311 1238789 - 1237938 - | dTDP-4-dehydrorhamnose reductase TERM 1512 1238812 - 1238833 + rH 91 -11.5 -3.86322 | opp_overlap 1238812 CCTTATTTCAAGAAA GGCTTGGGC AAGA GCCCTAGCC TTTAATAATCTTATT TERM 1513 1238833 - 1238812 - RH 91 -11.5 -4.1822 | opp_overlap 1238812 CCTTATTTCAAGAAA GGCTTGGGC AAGA GCCCTAGCC TTTAATAATCTTATT SSU98_1313 1240037 - 1238844 - | dTDP-glucose 4,6-dehydratase SSU98_1312 1239319 - 1239411 + | hypothetical protein TERM 1514 1239892 - 1239906 + gT 100 -3.6 -6.28401 | overlap 1239893 1239901 TTAAATTGAGACATT TTTTTC TCC GAAAAG TTTTTTTCTTTTTTG TERM 1515 1239901 - 1239914 + gT 84 -3.9 -5.43414 | overlap 1239893 1239892 GACATTTTTTTCTCC GAAAA GTTT TTTTC TTTTTTGTGTGTCAT TERM 1516 1239978 - 1239999 + gT 78 -9.5 -3.54919 | gap 1, opp_overlap 1239978 TGTTTCATTACTAAA CCATGAG-CC TAA GGTCTCATGG TTTCCCCCGCTCCTT TERM 1517 1239999 - 1239978 - GT 81 -9.5 -3.78775 | gap 1, opp_overlap 1239978 TGTTTCATTACTAAA CCATGAG-CC TAA GGTCTCATGG TTTCCCCCGCTCCTT TERM 1518 1240008 - 1240030 + gT 89 -12 -3.35679 | CTCATGGTTTCCCCC GCTCCTTAGC AAA GCAAAGGAGC TTCTCACTACGGCGA SSU98_1314 1240564 - 1240079 - | hypothetical protein SSU98_1315 1241157 - 1240564 - | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 1519 1241102 - 1241076 - G 79 -11 -3.14132 | GGTTGTCGCCATGAA CAGGAATGTCAA ATT CTAACATTCCTG GAATAGCTTCAACTG SSU98_1316 1241915 - 1241157 - | glucose-1-phosphate thymidylyltransferase TERM 1520 1241774 - 1241760 - G 72 -6.4 -4.33417 | TTCACCGATAATAAA GGCTTG CGC CAAACC ATCTGGACTTGGTTG SSU98_1317 1242025 - 1241903 - | glucose-1-phosphate thymidylytransferase TERM 1521 1242113 - 1242098 - R 100 -5.4 -6.22802 | opp_overlap 1242098 TGTCATAAAAAAAAA GCCTGT GACG ACAGAC TTTAACAAATTATCC SSU98_1318 1242956 - 1242123 - | divalent heavy-metal cations transporter TERM 1522 1242712 - 1242680 - G 82 -3.3 -5.47399 | CCAAGCGTAAAAAAA TACCACCTGCTGCAA AAC CTACTGCTGCTGGTA TCCAAGCCAGATTGC TERM 1523 1243094 - 1243063 - R 91 -6 -5.43553 | gap 1, opp_overlap 1243063 ATCTAAAAAATAAAA GACCTAAAACTACAT TAA ATGTCGTCTT-GGTC TTTCCACAATCAAGT SSU98_1319 1243917 - 1243123 - | hypothetical protein TERM 1524 1243522 - 1243535 + g 70 -8.1 -3.65902 | CACACGGCCAAGCCC CTGCC CCTC GGCAG TTTCAATCAAGTAGG SSU98_1320 1244629 - 1243907 - | SAM-dependent methyltransferase SSU98_1321 1245266 - 1244592 - | putative primosome component and related proteins TERM 1525 1244736 - 1244751 + gr 71 -3.3 -4.96427 | GTTTCGTAGAATAGC TTGGA TGTATT TCCAA TTTGTTTTGTTGTTA SSU98_1322 1246268 - 1245276 - | homoserine O-succinyltransferase SSU98_1323 1246833 - 1246321 - | adenine phosphoribosyltransferase TERM 1526 1247241 - 1247296 + r 83 -9.2 -3.98378 | gap 2 AACCTAATCAACTGT GCGGGGGTGGGAAGACGAACTCTTTT TAGACC AGTCGAGTTC-T-TTCCCACTCCCGC TTATTATTAGCTCTG SSU98_1324 1248162 - 1247266 - | hypothetical protein SSU98_1325 1250354 - 1248141 - | single-stranded DNA-specific exonuclease TERM 1527 1249514 - 1249526 + g 70 -7.7 -3.72775 | opp_overlap 1249514, overlap 1249512 TCAACCTCGGAGCAA GTTGG AAA CCAAC TGTTTCTTCATCAAT SSU98_1326 1252057 - 1250510 - | phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein SSU98_1327 1252404 - 1255226 + | hypothetical protein SSU98_1328 1255204 - 1255458 + | hypothetical protein TERM 1528 1255490 - 1255471 - T 73 -6.4 -4.35116 | opp_overlap 1255471 TAGTCTACACGAAAA CGCCGA GTTTTATT TCGGCG TTTTTCTATGCTTAT TERM 1529 1255471 - 1255490 + T 85 -7.1 -5.05079 | opp_overlap 1255471 TAGTCTACACGAAAA CGCCGAG TTTTAT TTCGGCG TTTTTCTATGCTTAT SSU98_1329 1256257 - 1255502 - | Short-chain dehydrogenase of various substrate specificities TERM 1530 1256098 - 1256120 + g 82 -3.4 -5.55664 | overlap 1256090 GAGCTATTTCGTCTC GGATGTCT ACATCAA AGACAGCC TTTTTTTCATGGTAA SSU98_1330 1257183 - 1256254 - | ribonuclease Z SSU98_1331 1257823 - 1257194 - | HrpA-like helicase TERM 1531 1257506 - 1257496 - G 71 -3.2 -5.02074 | CTACTTCCGAAAAAA CCTG GGC CAGA CCGTCCGCCGACACA SSU98_1332 1259057 - 1257807 - | GTPase miaA 1259934 - 1259050 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 1532 1260125 - 1260113 - g 80 -6.3 -4.84492 | TGAACCAGAAGAAAA GAAAG AAG CTTTC ATTGAGGAAAATCGT SSU98_1334 1259943 - 1260173 + | hypothetical protein TERM 1533 1260177 - 1260193 + T 91 -5.1 -5.95539 | opp_overlap 1260177 GTGGCACATTAAAAA GCTGG CAAATGT CCAGC TTTTTTTGTTTGACA TERM 1534 1260193 - 1260177 - T 74 -5.1 -4.8048 | opp_overlap 1260177 GTGGCACATTAAAAA GCTGG CAAATGT CCAGC TTTTTTTGTTTGACA TERM 1535 1260265 - 1260214 - T 90 -6.9 -5.24129 | opp_overlap 1260214 TTGTTTGACAAAAAA TCCCTT-AGAAGCTCTGCCATTTTC ACAG AAAAATGCCAGC-CTTCTTAAGGGA TTATACTTTATAAGA SSU98_1335 1261409 - 1260273 - | hypothetical protein TERM 1536 1260454 - 1260472 + g 73 -7.4 -4.18506 | overlap 1260450 ATTCCTGATAACTGG GCAGTAGC CTG GCTGTTGC TTGTTTTCAAAGTAA TERM 1537 1261128 - 1261116 - G 72 -6.3 -4.38843 | opp_overlap 1261106, overlap 1261106 CAAAACATTAATAAA TGCTA TTG TAGCA CCAACAAGCATTGTA TERM 1538 1261805 - 1261792 - g 77 -3.9 -5.09895 | CACTCATCCAAAAAA TTGTT GCAG AACAA AAAGAAAACGGTTTG SSU98_1336 1261635 - 1262783 + | hypothetical protein TERM 1539 1262870 - 1262901 + T 84 -7.5 -4.66537 | opp_overlap 1262870 ATCTATGATATCTAA TCCCAAGTATT TTTCCGATGT AATACTTGGGA TTTTATGTTCGGACA TERM 1540 1263378 - 1263389 + T 78 -3.6 -5.28561 | ATCGCTTACAGTATC GTCC ATTT GGGC TTTTTATTGTATATT SSU98_1337 1264475 - 1263453 - | phosphate starvation-inducible protein PhoH, ATPase TERM 1541 1264534 - 1264518 - R 76 -4.4 -5.22006 | opp_overlap 1264513 1264518 CTATTATAACAAAAA TAGCCC AAACA AGGCTA TTTTGTACTATTTTA SSU98_1338 1264769 - 1264554 - | hypothetical protein SSU98_1339 1265230 - 1264775 - | hypothetical protein SSU98_1340 1266160 - 1265240 - | 2-dehydropantoate 2-reductase SSU98_1341 1267078 - 1266170 - | hypothetical protein TERM 1542 1267078 - 1267049 - G 77 -6.4 -4.72272 | opp_overlap 1267050, overlap 1267050 CTTTCTGATTAAAAA GTGGGGGAAGTC TTGTCT AACTCCCCCCAT TAGATTTCTTATTGG TERM 1543 1267077 - 1267050 - G 78 -9.9 -3.43042 | opp_overlap 1267050, overlap 1267049 TTTCTGATTAAAAAG TGGGGGAAGTC TTGTCT AACTCCCCCCA TTAGATTTCTTATTG frr 1267713 - 1267156 - | ribosome recycling factor pyrH 1268669 - 1267848 - | uridylate kinase TERM 1544 1268679 - 1268657 - G 87 -4.9 -5.45652 | ATCTCCAAGAAAAAA GGAAAATCC TCAAC GAACTTTCC TTCTCACATTCTAAA SSU98_1344 1270389 - 1268749 - | O-antigen and teichoic acid export protein TERM 1545 1270530 - 1270514 - R 100 -10.1 -5.56372 | AAAGTAAAAGAAAAA CCCACCC ATA AGGTGGG CAAGTCAATTAATTA SSU98_1345 1271327 - 1270539 - | glutathione S-transferase SSU98_1346 1271674 - 1271336 - | hypothetical protein TERM 1546 1271722 - 1271705 - R 93 -6.3 -5.80364 | opp_overlap 1271705 ATCTCAAGAAAAAAA GATTGCC CTAA GACAATC TTTCTATTGATTAAA rplA 1272422 - 1271733 - | 50S ribosomal protein L1 TERM 1547 1271762 - 1271776 + g 71 -8.6 -3.42996 | opp_overlap 1271742 GATCAACTTTGATAC CAACAC CTT GTGTTG TTGTAATAGATACTG rplK 1272888 - 1272463 - | 50S ribosomal protein L11 TERM 1548 1272633 - 1272674 + g 72 -6.5 -4.30576 | overlap 1272636 TACCTGAACCTTTTT CAACACCTGCAGCTTTTTT CAAA AGAACAGCAGCTGGTGGTG TTTTAGTGATGAAAG TERM 1549 1272964 - 1272948 - H 77 -8.1 -3.86897 | opp_overlap 1272942 1272947 1272948 1272950 TTTACCTCCCACAAA TATGTGT TTT ACACATA CCTTTTCATTATACA TERM 1550 1273286 - 1273305 + G 75 -2.2 -5.36441 | overlap 1273289 GGTCTTTGCGGTTTC TTCCTTTT AAAG AAAAAGAA TTTTTTATATCGACG SSU98_1349 1273043 - 1273411 + | hypothetical protein TERM 1551 1273442 - 1273471 + T 100 -11.5 -4.9218 | opp_overlap 1273445, overlap 1273445 CATAGATGGCATAAT AAATCCCCATTGC AGGC GCAGTGGGGATTC TTTTTATACTAAATC TERM 1552 1273468 - 1273445 - T 90 -11 -4.32579 | opp_overlap 1273442 1273445 AGATGGCATAATAAA TCCCCATTGC AGGC GCAGTGGGGA TTCTTTTTATACTAA TERM 1553 1273445 - 1273468 + T 100 -13.2 -4.56153 | opp_overlap 1273445, overlap 1273442 AGATGGCATAATAAA TCCCCATTGC AGGC GCAGTGGGGA TTCTTTTTATACTAA TERM 1554 1273557 - 1273576 + T 91 -13.6 -2.53581 | AGGTGCAGGTTGCTA GCACAGCC TAGT GGCTGTGC TAGGTTGGAGATATA SSU98_1350 1274165 - 1273779 - | lactoylglutathione lyase and related lyases SSU98_1351 1276534 - 1274165 - | DNA segregation ATPase FtsK/SpoIIIE and related proteins TERM 1555 1275507 - 1275517 + g 75 -5.4 -4.87291 | ACTTTAATATTCTGA CGAA CAA TTCG TTTTTCATTGGACTG SSU98_1352 1278017 - 1276659 - | Beta-fructosidases (levanase/invertase) TERM 1556 1277761 - 1277802 + g 90 -11.7 -3.68366 | gap 1, overlap 1277757 1277765 TCGTAAGCTTTATCA GGAGCTAGGTCAACTGGAAG TTG TTCCCAGTTGACCAAG-TCC TTACTTTTCGCATGC TERM 1557 1277765 - 1277799 + g 86 -12.2 -2.94333 | overlap 1277761 1277757 AAGCTTTATCAGGAG CTAGGTCAACTGGAAG TTG TTCCCAGTTGACCAAG TCCTTACTTTTCGCA SSU98_1353 1279654 - 1278035 - | ABC-type sugar transport system, periplasmic component SSU98_1354 1280579 - 1279692 - | ABC-type sugar transport system, permease component SSU98_1355 1281449 - 1280589 - | ABC-type polysaccharide transport system, permease component SSU98_1356 1281606 - 1281481 - | hypothetical protein TERM 1558 1281524 - 1281535 + g 75 -3 -5.18726 | opp_overlap 1281530 ATAAGAACTCCTTTT TGAA ACGT TTCA TTTTTCTTGTGAAAA TERM 1559 1281611 - 1281621 + r 77 -2.6 -5.47914 | TTTTCTGTCAACTGC TTTT TTA AAAA TTTTTTGTAGTTTTT SSU98_1357 1282604 - 1281615 - | transcriptional regulator TERM 1560 1282738 - 1282703 - R 100 -10 -5.33405 | gap 1, opp_overlap 1282713 GTTAGCAAATAAAAA CACCCAAAAAGCTAGAA TGA TTCTAACTTT-TGAGTG CCGTTTAAAAATCTT SSU98_1358 1283306 - 1282761 - | hypothetical protein SSU98_1359 1283735 - 1283307 - | lactoylglutathione lyase and related lyases TERM 1561 1283777 - 1283763 - H 95 -7.8 -5.27335 | TTCTCCAAAGAAAAA CGACTC TTA GAGCCG TTCAAAACCTAGGAA TERM 1562 1283823 - 1283809 - H 70 -6.4 -4.08216 | opp_overlap 1283809 1283814 CGAGTCCCCTGAAAA TGCAGG GTG CCTACA TCTCTCTCTGCTAAA TERM 1563 1284431 - 1284412 - g 71 -9.4 -3.05463 | overlap 1284414 1284424 ACTGCTTCTAGCCAA TATGCCAA AGAT TTGGCATA CGCCATTAACAATCC SSU98_1360 1284265 - 1285068 + | peptidyl-prolyl cis-trans isomerase TERM 1564 1285074 - 1285123 + F 84 -8 -4.70659 | CACCTTTTAAAAATG GGTTCTATAATTTCTGTAGTGG GTAAAA CCACCGTGGAGATTATGGAGCC TTTTTGAGTATAGAA TERM 1565 1286443 - 1286421 - g 100 -12.8 -4.68511 | opp_overlap 1286418 1286425 TTGAACATAAAGAAA GAGAGAACGA AGT TCGTCCTCTC TAGGTGTTAGCTTTT SSU98_1361 1285161 - 1286453 + | transposase TERM 1566 1286489 - 1286537 + T 100 -24.9 -3.58766 | opp_overlap 1286493, overlap 1286491 1286493 1286497 GTTGACAAAGAGCCT AAAATGAAGCTGGGCAAGACATC ATA GATGTCTTGCCCAGCTTCATGTA TTCTATCATATCCTT TERM 1567 1286491 - 1286535 + T 100 -27.5 -3.3636 | opp_overlap 1286493, overlap 1286489 1286493 1286497 TGACAAAGAGCCTAA AATGAAGCTGGGCAAGACATC ATA GATGTCTTGCCCAGCTTCATG TATTCTATCATATCC TERM 1568 1286533 - 1286493 - T 100 -30.1 -4.2243 | opp_overlap 1286491 1286489 1286493 1286497 ACAAAGAGCCTAAAA TGAAGCTGGGCAAGACATC ATA GATGTCTTGCCCAGCTTCA TGTATTCTATCATAT TERM 1569 1286493 - 1286533 + T 100 -30.1 -3.24478 | opp_overlap 1286493, overlap 1286491 1286489 1286497 ACAAAGAGCCTAAAA TGAAGCTGGGCAAGACATC ATA GATGTCTTGCCCAGCTTCA TGTATTCTATCATAT TERM 1570 1286497 - 1286529 + T 100 -25.1 -3.41262 | opp_overlap 1286493, overlap 1286493 1286491 1286489 AGAGCCTAAAATGAA GCTGGGCAAGACATC ATA GATGTCTTGCCCAGC TTCATGTATTCTATC TERM 1571 1286624 - 1286614 - T 78 -5.4 -4.93296 | CTACCACTAGAAAAA GTTC ACT GAAC CTCGACGCAGTAGGC prfC 1288294 - 1286750 - | peptide chain release factor 3 TERM 1572 1288457 - 1288442 - H 72 -7.6 -3.71924 | opp_overlap 1288442 1288439 1288437, overlap 1288431 CAAACTATTGAAGAA TAGGTC TACA GACCTA TACTATTGTATTATA TERM 1573 1288851 - 1288881 + G 77 -10.6 -3.14146 | overlap 1288835 1288856 TGTTCGCGATAGCGA GACAATATCTATTG CAC CAGAAGATATTGTC TTAGATGATGTTCTC TERM 1574 1289642 - 1289615 - g 71 -10 -2.65112 | overlap 1289606 AAGCTAGTCACATCA TCCCATTTTCTA GTGA TAGAAAATGGGG GGCAATGACAATAGA SSU98_1363 1288531 - 1290867 + | cation transport ATPase TERM 1575 1290900 - 1290871 - T 100 -11 -5.18355 | opp_overlap 1290871 TTTAAAAACTAAAAA TAAGACTTGAAA AACTAA TTTCAAGTCTTA TTTTTTCAATATATG TERM 1576 1290871 - 1290900 + T 100 -11 -5.14477 | opp_overlap 1290871 TTTAAAAACTAAAAA TAAGACTTGAAA AACTAA TTTCAAGTCTTA TTTTTTCAATATATG SSU98_1364 1291656 - 1290898 - | major facilitator superfamily permease TERM 1577 1291687 - 1291671 - R 89 -8 -5.02476 | opp_overlap 1291671 1291669 AGACTTGCTAAAAAA GAGAGG TCTCT CCTCTC TACTTTTCTATTGCT SSU98_1365 1293060 - 1291687 - | UDP-N-acetylmuramyl pentapeptide synthase TERM 1578 1291744 - 1291758 + g 72 -6.4 -4.29432 | opp_overlap 1291744, overlap 1291736 ATTAGAGCCTTTAAA GAGGAT TTG GTCCTC TTTTCCTAGACTTTC TERM 1579 1291960 - 1291977 + g 72 -7.7 -3.89956 | overlap 1291963 ATTGTGGAGATCGAC GGACTGG CTCC CCAGTTC TTTCATATCTGCTAA TERM 1580 1292563 - 1292589 + g 86 -6.6 -5.05601 | overlap 1292564 ATGAATATCTCCCAA GTGGTCTTGG CCCATTT CCAAGACCAG TTTTTCTGTATCATC TERM 1581 1292564 - 1292588 + g 80 -10.1 -3.62276 | overlap 1292563 TGAATATCTCCCAAG TGGTCTTGG CCCATTT CCAAGACCA GTTTTTCTGTATCAT TERM 1582 1293084 - 1293073 - R 91 -5.8 -5.46129 | opp_overlap 1293073 CAATAAACTAAAAAA GAGC TTTC GCTC TTTCTATTATACCAC SSU98_1366 1293632 - 1293177 - | hypothetical protein TERM 1583 1293616 - 1293634 + g 78 -10.4 -3.25015 | opp_overlap 1293616 CTTTGCAAGAAAAAA GATTGGAA TGA TTCCAATC TTGATAATAATTAAA TERM 1584 1293634 - 1293616 - G 100 -10.4 -5.4505 | opp_overlap 1293616 CTTTGCAAGAAAAAA GATTGGAA TGA TTCCAATC TTGATAATAATTAAA SSU98_1367 1294496 - 1293645 - | D-alanine-D-alanine ligase and related ATP-grasp enzymes SSU98_1368 1294745 - 1294539 - | D-alanine-D-alanine ligase and related ATP-grasp enzymes SSU98_1369 1294990 - 1294796 - | putative recombination protein SSU98_1370 1295394 - 1294987 - | recombinational DNA repair protein (RecF pathway) SSU98_1371 1297478 - 1295403 - | cell division protein FtsI/penicillin-binding protein 2 SSU98_1372 1298304 - 1297555 - | ABC transporter ATPase SSU98_1373 1299009 - 1298467 - | ABC transporter, ATP-binding protein TERM 1585 1299347 - 1299331 - R 84 -5.1 -5.4251 | overlap 1299342 1299344 TGGACACAGAAAAAA GCCATGC AAA ACATGAC CATTCCCTATGGGAA TERM 1586 1299370 - 1299342 - R 73 -6.7 -4.22948 | overlap 1299331 1299344 AAAAGCCATGCAAAA CATGACCATTCCC TAT GGGAAAAGTCACA CGAATAGTAAGCCCT TERM 1587 1299368 - 1299344 - R 81 -9.3 -3.70331 | overlap 1299331 1299342 AAGCCATGCAAAACA TGACCATTCCC TAT GGGAAAAGTCA CACGAATAGTAAGCC SSU98_1374 1300331 - 1299528 - | beta-lactamase superfamily hydrolase SSU98_1375 1301687 - 1300338 - | Signal transduction histidine kinase TERM 1588 1300509 - 1300524 + g 80 -10.4 -3.48924 | ACCTGTACCACCTTG GGCACG AGAT CGTGCC TTGTCTACGCGATAA TERM 1589 1300908 - 1300920 + g 71 -9.1 -3.31269 | opp_overlap 1300907 GAGATCTGTAATCAT CCGCA TCA TGCGG TTGGTCTCATCTAAG SSU98_1376 1302384 - 1301680 - | response regulator SSU98_1377 1302578 - 1303339 + | ABC-type polar amino acid transport system, ATPase component TERM 1590 1304152 - 1304140 - g 72 -7.7 -3.89524 | ATGGTAGCCTACAAA GCATC TAT GATGC CAATGGTCTCAAACC SSU98_1378 1303350 - 1304189 + | glutamine ABC transporter substrate-binding protein SSU98_1379 1304204 - 1304902 + | amino acid ABC transporter, permease protein SSU98_1380 1304917 - 1305576 + | ABC-type amino acid transport system, permease component TERM 1591 1305582 - 1305603 + T 100 -12.3 -4.8048 | opp_overlap 1305580 TATAGAATGAAATTT CTCCCAGCC AATC GGTTGGGAG TTTTTGCTGTCAAAA TERM 1592 1305638 - 1305621 - T 89 -7.7 -5.00616 | opp_overlap 1305621 TTTGCTGTCAAAAAA GAAGCCC TTTC GGACTTC TTGCTTTATTTATTC thrS 1307600 - 1305648 - | threonyl-tRNA synthetase TERM 1593 1306463 - 1306437 - G 72 -8 -3.86897 | opp_overlap 1306444 TTCAGGTGTCACAAA GATATGACCGTC GTT GAGGGTCATCTC ACGTACCCGTTGCAA SSU98_1382 1307937 - 1307614 - | hypothetical protein TERM 1594 1307983 - 1307956 - R 100 -12.8 -5.07652 | TCCTCCAAAAGAAAA TACGACGCCCTC GTAA AAGGACGTCGTA ACGTGGTTCCACCTT SSU98_1383 1308567 - 1308193 - | hypothetical protein SSU98_1384 1309895 - 1308582 - | glycosyltransferase SSU98_1385 1310894 - 1309896 - | glycosyltransferase TERM 1595 1311736 - 1311724 - g 91 -4.8 -5.60993 | CTTTCGATAAAAAAA GTCC TCGAG GGAC GTACCTTAAACACCG TERM 1596 1312864 - 1312844 - g 77 -8.3 -3.922 | overlap 1312832 AAACTGCTAAGCAAA TCTTACCAG TAA CTGGTGAGA AAGGAAGTTTATGGT SSU98_1386 1311640 - 1312941 + | ribonucleases G and E TERM 1597 1313054 - 1313097 + T 83 -6.1 -5.1471 | gap 1, opp_overlap 1313049 1313056 1313060, overlap 1313060 AGACTTAAAATCAAC CACAAAGCCCTCGCTAAGCT TATAC ATCT-AGCGAGGGCTTTATA TTTATTTTTTATAAT TERM 1598 1313095 - 1313056 - T 79 -10.9 -2.94735 | gap 1, opp_overlap 1313054 1313060, overlap 1313049 1313060 ACTTAAAATCAACCA CAAAGCCCTCGCTAAGCT TATAC ATCT-AGCGAGGGCTTTA TATTTATTTTTTATA TERM 1599 1313091 - 1313060 - T 85 -9.5 -4.12841 | gap 1, opp_overlap 1313060 1313054, overlap 1313056 1313049 AAAATCAACCACAAA GCCCTCGCTAAGCT TATAC ATCT-AGCGAGGGC TTTATATTTATTTTT TERM 1600 1313060 - 1313091 + T 91 -9.5 -4.56642 | gap 1, opp_overlap 1313056 1313049 1313060, overlap 1313054 AAAATCAACCACAAA GCCCTCGCTAAGCT TATAC ATCT-AGCGAGGGC TTTATATTTATTTTT SSU98_1387 1314376 - 1313375 - | transcriptional regulator SSU98_1388 1314586 - 1315671 + | Xaa-Pro aminopeptidase TERM 1601 1315703 - 1315676 - T 95 -7 -5.37345 | opp_overlap 1315676 1315679, overlap 1315678 1315679 TTGAAGGATAAAAAA TAGCCTCCTACA AATC TGTAGGAGGTTG TTTATTCTAGAAATT TERM 1602 1315676 - 1315703 + T 91 -11.4 -4.31835 | opp_overlap 1315676 1315678 1315679, overlap 1315679 TTGAAGGATAAAAAA TAGCCTCCTACA AATC TGTAGGAGGTTG TTTATTCTAGAAATT TERM 1603 1315701 - 1315678 - T 86 -9.6 -4.31563 | opp_overlap 1315676 1315679, overlap 1315676 1315679 GAAGGATAAAAAATA GCCTCCTACA AATC TGTAGGAGGT TGTTTATTCTAGAAA TERM 1604 1315679 - 1315700 + T 100 -13.1 -4.27512 | opp_overlap 1315678 1315676 1315679, overlap 1315676 AAGGATAAAAAATAG CCTCCTACA AATC TGTAGGAGG TTGTTTATTCTAGAA TERM 1605 1315700 - 1315679 - T 95 -13.1 -3.17311 | opp_overlap 1315679 1315676, overlap 1315678 1315676 AAGGATAAAAAATAG CCTCCTACA AATC TGTAGGAGG TTGTTTATTCTAGAA tgt 1316852 - 1315710 - | queuine tRNA-ribosyltransferase TERM 1606 1316797 - 1316808 + g 85 -5.8 -5.12172 | ATTTCGCCCAAACGT GCAC CTGT GTGC TTTTCTTTCTTAATC SSU98_1390 1317172 - 1318014 + | integral membrane protein TERM 1607 1318017 - 1318037 + T 100 -9.1 -4.98522 | opp_overlap 1318017 GAGTTACGTATAAAA TAAGAGCGA TAT TTGCTCTTA TTTTTATATACGCTT TERM 1608 1318037 - 1318017 - T 79 -6.9 -4.431 | opp_overlap 1318017 GAGTTACGTATAAAA TAAGAGCGA TAT TTGCTCTTA TTTTTATATACGCTT TERM 1609 1318246 - 1318270 + T 100 -13.7 -4.65895 | CCTTAGAGTCATCCG GCAGTTCAATG GTT CATTGAGCTGC TTTTTCGATGAAAAA TERM 1610 1318306 - 1318287 - T 100 -8.6 -5.14563 | opp_overlap 1318287 TTTTCGATGAAAAAA GTCGGATA AATA TACCCGAC TTATTAGTATTGTTC SSU98_1391 1318747 - 1318310 - | CoA-binding protein SSU98_1392 1319601 - 1318867 - | glucose-6-phosphate isomerase TERM 1611 1319374 - 1319394 + g 87 -6.1 -5.22289 | AGCAACACCATTATT GGCCGCA TAAATCT TGTGGCC TTTTTGTGTTTCGTC SSU98_1393 1322273 - 1319637 - | DNA polymerase I TERM 1612 1322359 - 1322331 - R 78 -9.7 -3.40052 | opp_overlap 1322336, overlap 1322336 AGAGCTGGAATAACA GAAAATCCCAGTC AGT GACTAGGATTTTT CTTTTCGATAATAAA TERM 1613 1322354 - 1322336 - R 100 -9.6 -4.79752 | opp_overlap 1322336, overlap 1322331 TGGAATAACAGAAAA TCCCAGTC AGT GACTAGGA TTTTTCTTTTCGATA TERM 1614 1322336 - 1322354 + r 100 -7.4 -5.48213 | opp_overlap 1322336 1322331 TGGAATAACAGAAAA TCCCAGTC AGT GACTAGGA TTTTTCTTTTCGATA SSU98_1394 1323674 - 1322349 - | hypothetical protein TERM 1615 1323691 - 1323725 + r 83 -9.5 -3.98204 | opp_overlap 1323700, overlap 1323692 1323700 TCTAGACTTGTGTTT ACAGAAAAATCCTAG ATGCA CTAGGATTTTTTTGC TTTATAGCTGTGTTT TERM 1616 1323692 - 1323724 + r 88 -13 -2.97838 | opp_overlap 1323700, overlap 1323691 1323700 CTAGACTTGTGTTTA CAGAAAAATCCTAG ATGCA CTAGGATTTTTTTG CTTTATAGCTGTGTT TERM 1617 1323700 - 1323716 + r 93 -6.6 -5.75822 | opp_overlap 1323700, overlap 1323692 1323691 GTGTTTACAGAAAAA TCCTAG ATGCA CTAGGA TTTTTTTGCTTTATA TERM 1618 1323716 - 1323700 - R 82 -6.6 -4.96848 | opp_overlap 1323700 1323692 1323691 GTGTTTACAGAAAAA TCCTAG ATGCA CTAGGA TTTTTTTGCTTTATA SSU98_1395 1327203 - 1323826 - | peptide ABC transporter permease SSU98_1396 1327904 - 1327203 - | peptide ABC transporter ATPase TERM 1619 1327981 - 1327966 - R 90 -9 -4.52047 | opp_overlap 1327963 1327966 1327968 TATTATAGCACAAAA GAGGGT TTTC ACCCTC TCCTTCATCTTTTAC SSU98_1397 1328124 - 1327993 - | superfamily I DNA/RNA helicase SSU98_1398 1328195 - 1328097 - | hypothetical protein TERM 1620 1328412 - 1328393 - R 90 -7.1 -5.15634 | opp_overlap 1328393 TATTCCATCAAAAAA CGATGCC TGTTCC GGCACCG TTATATCTTTATTTA tpx 1328912 - 1328421 - | thiol peroxidase TERM 1621 1328975 - 1328962 - R 87 -2.4 -6.09133 | TATGTTAAAAAAAAA CAGT TTTTTG ACTG GGATTTTTGAAATAG SSU98_1400 1331435 - 1329096 - | cation transport ATPase TERM 1622 1330714 - 1330702 - G 72 -7.7 -3.78529 | overlap 1330700 ACAATCATCAAAAGA CCTTG AAC CAAGG CTGCCCCTGTCCCAA TERM 1623 1331556 - 1331586 + r 80 -11.2 -3.15354 | opp_overlap 1331565 1331566, overlap 1331554 1331565 TTGACTTGATTTGAT GACTGAAAAGCTCC TGT GGAGGTTTTCAGCC TGTTCCCTTGAAATA TERM 1624 1331748 - 1331726 - R 100 -9.2 -5.31877 | opp_overlap 1331726 ATTGAGTATAAAAAA TAGATTGGAG AGA CCCCAACCTA TTTCTTACTAGCTCT SSU98_1401 1333589 - 1331766 - | amylase-binding protein B TERM 1625 1333517 - 1333506 - G 73 -5.8 -4.44667 | TTTCCCAATAATAAA GCCT GAAC AGGC TTGAACAAGTTGAAC TERM 1626 1333750 - 1333768 + rH 75 -8.8 -3.54307 | opp_overlap 1333750 CATTGTAACGCAAAA GCACCTGC CTT GCAAGTGC TTTCAAAAAAATATT TERM 1627 1333768 - 1333750 - RH 90 -11 -4.2803 | opp_overlap 1333750 CATTGTAACGCAAAA GCACCTGC CTT GCAAGTGC TTTCAAAAAAATATT SSU98_1403 1334769 - 1333783 - | tellurite resistance protein TehB TERM 1628 1334445 - 1334415 - GH 72 -9.6 -2.67803 | overlap 1334411 CTGTCAGCAAAGTCA CCCGATGCCAAGCC TGT GGCTCGACAAAGGG AACATCATCTGTCGG SSU98_1402 1334737 - 1335855 + | threonine dehydrogenase and related Zn-dependent dehydrogenase TERM 1629 1335867 - 1335898 + Tr 83 -7.3 -4.75288 | opp_overlap 1335868 1335869, overlap 1335869 TTAAGATAAATAATA AGCCCCAGATAGT CTCGAA ACTGTCTGGGGTA TTTGTTTTCCTATAA TERM 1630 1335897 - 1335868 - TR 75 -7.1 -4.21393 | opp_overlap 1335867 1335869, overlap 1335869 TAAGATAAATAATAA GCCCCAGATAGTC TCGA AACTGTCTGGGGT ATTTGTTTTCCTATA TERM 1631 1335869 - 1335896 + Tr 93 -12.1 -3.98052 | opp_overlap 1335869 1335868, overlap 1335867 AAGATAAATAATAAG CCCCAGATAGT CTCGAA ACTGTCTGGGG TATTTGTTTTCCTAT TERM 1632 1335896 - 1335869 - TR 78 -10.6 -3.11209 | opp_overlap 1335867 1335869, overlap 1335868 AAGATAAATAATAAG CCCCAGATAGTC TCGA AACTGTCTGGGG TATTTGTTTTCCTAT TERM 1633 1335940 - 1335921 - TR 100 -7.8 -5.55769 | opp_overlap 1335921 TCCTATAACAAAAAA GACCGGGA TTTC TCCCAGCC TCTATCGACTATTGA smpB 1336409 - 1335942 - | SsrA-binding protein TERM 1634 1336326 - 1336367 + g 100 -7.9 -5.79595 | overlap 1336327 CCCCGTCAGGACCAT CCCCGCCTCCACTGTATCG ACAA TGGTATAGTCGTGGCGGGC TTTTTTATTTTGCGC TERM 1635 1336327 - 1336366 + g 100 -11.4 -4.0613 | overlap 1336326 CCCGTCAGGACCATC CCCGCCTCCACTGTATCG ACAA TGGTATAGTCGTGGCGGG CTTTTTTATTTTGCG SSU98_1405 1338781 - 1336412 - | exoribonuclease R TERM 1636 1336623 - 1336633 + g 73 -5.4 -4.59109 | GCAGTTCTCCGCTTG GCTT TCA AAGC TTTTTCGACAATATC secG 1339446 - 1339213 - | preprotein translocase subunit SecG SSU98_1407 1340847 - 1339642 - | major facilitator superfamily permease TERM 1637 1340558 - 1340544 - G 76 -2.8 -5.32565 | overlap 1340536 1340546 TAAGCAACCAAAAAA CATTTG GTA CAAAGG CCATACCACCCATAG SSU98_1408 1341436 - 1340834 - | dephospho-CoA kinase SSU98_1409 1342322 - 1341429 - | formamidopyrimidine-DNA glycosylase TERM 1638 1341515 - 1341531 + g 70 -8 -3.67141 | overlap 1341514 CTGTCTGGCAACGGG GACAGG CCTGC CCTGTC TTTCCGTAAACTTGT TERM 1639 1341572 - 1341582 + g 82 -6.8 -4.87665 | GCATAGTCCCATCCA TGCC CAA GGCA TTTTTGTAAGTCCGA TERM 1640 1342445 - 1342413 - R 79 -7 -4.42594 | gap 1, opp_overlap 1342413 1342413 1342441, overlap 1342415 CAAAGCAAATAGAAA CCTGACCGACGGTGC TTCG GCACC-TAGGTCACG GTTGTGATTTTCAAA TERM 1641 1342560 - 1342534 - R 75 -10.3 -2.57683 | gap 1, opp_overlap 1342530, overlap 1342533 AGATTTCTCCATAAC GCAGTAAAAGCC TTTC GGCTTTT-CTGC TAACTATTTCTAAGT TERM 1642 1342843 - 1342875 + r 95 -12.9 -3.64357 | opp_overlap 1342853, overlap 1342846 1342853 CTAGTTTCCAAGCTC GGGTTAAAAACGTCC CCC GGACGTTTTTAATAC TCTTTCTCATTATAA TERM 1643 1342846 - 1342872 + r 100 -15.4 -2.92326 | opp_overlap 1342853, overlap 1342843 1342853 GTTTCCAAGCTCGGG TTAAAAACGTCC CCC GGACGTTTTTAA TACTCTTTCTCATTA TERM 1644 1342865 - 1342853 - R 90 -9.1 -4.56775 | opp_overlap 1342846 1342843 1342853 AGCTCGGGTTAAAAA CGTCC CCC GGACG TTTTTAATACTCTTT TERM 1645 1342853 - 1342865 + r 100 -9.1 -4.81734 | opp_overlap 1342853, overlap 1342846 1342843 AGCTCGGGTTAAAAA CGTCC CCC GGACG TTTTTAATACTCTTT era 1343768 - 1342869 - | GTP-binding protein Era SSU98_1411 1344186 - 1343785 - | diacylglycerol kinase SSU98_1412 1344664 - 1344167 - | putative metalloprotease TERM 1646 1345063 - 1345052 - g 93 -4.4 -5.80364 | AGCCTAACAAAAAAA GTCT TGGT AGAC TATGAGGAAATCCTA SSU98_1413 1344764 - 1345576 + | transcriptional regulator TERM 1647 1345656 - 1345621 - T 88 -5.6 -5.62288 | gap 1, opp_overlap 1345621 TTAATAAAACAAAAA GCATTCAAA-AATACCC GAT AGGTACAGTTTGAATGC TTTTAATTCGCTTAA SSU98_1414 1347188 - 1345680 - | phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific SSU98_1415 1347650 - 1347216 - | putative N-acetylmannosamine 6-P epimerase TERM 1648 1348134 - 1348108 - R 100 -9.6 -4.91977 | opp_overlap 1348108 TAGGAAAATATAAAA GATTCTACCCAA AAT TTGAATAGAATC CTTATTTTAATACCA SSU98_1416 1349721 - 1348228 - | hemolysin TERM 1649 1350059 - 1350078 + r 82 -12.2 -2.53263 | opp_overlap 1350062 1350064 1350065, overlap 1350062 AGCTGCAGGTTGCTA GAACAGCC TAGA GGCTGTTC TAGGTTGGAAATAAG TERM 1650 1350062 - 1350075 + r 70 -8.1 -3.42056 | opp_overlap 1350062 1350064 1350065, overlap 1350059 TGCAGGTTGCTAGAA CAGCC TAGA GGCTG TTCTAGGTTGGAAAT TERM 1651 1350075 - 1350062 - R 70 -8.1 -3.29511 | opp_overlap 1350059 1350062, overlap 1350064 1350065 TGCAGGTTGCTAGAA CAGCC TAGA GGCTG TTCTAGGTTGGAAAT TERM 1652 1350296 - 1350252 - R 100 -8.7 -5.0916 | opp_overlap 1350252 TTTTGAACACAAAAA CTCCCCCGACTAGCTTCTAAT CCT ATTAAAAACTTGTTAGGAGAG TTATTCCATTTTATT SSU98_1417 1351021 - 1350311 - | hypothetical protein TERM 1653 1351060 - 1351042 - R 74 -3.9 -5.2422 | gap 1, opp_overlap 1351042, overlap 1351034 AATTATAGCAAAAAA TTCC-AGC AAAA GCTTGGAA TTTTTAACTGCTTAT SSU98_1418 1352814 - 1351075 - | putative ABC transporter SSU98_1419 1354541 - 1352814 - | ABC-type multidrug transport system, ATPase and permease component TERM 1654 1354667 - 1354638 - R 86 -5.7 -5.27923 | gap 1 TAAGCGCACAAAAAA GCCCAGG-GAAGCA TCT CACTCCACCTAGGC TTGCGTAAGTCCACA SSU98_1420 1354990 - 1354793 - | hypothetical protein TERM 1655 1354992 - 1354978 - G 100 -8.6 -5.80727 | opp_overlap 1354977 AAAAATAAGAAAAAA CCTTGT CAA ACAAGG CCTTTCGATAGTATT SSU98_1421 1355201 - 1355710 + | Fe2+ transport system protein A TERM 1656 1356163 - 1356147 - g 85 -5.8 -5.15634 | CAGTGCACTAAAAAA GCTAGG TATAT CCCAGC TCCTCCATGAAGTAG TERM 1657 1357144 - 1357128 - g 81 -5.1 -5.16237 | overlap 1357130 1357134 AATGGCACTAAAAAA GACCAAG CAA CTTGGTG GAGTCGCAAGCCCCT TERM 1658 1357142 - 1357130 - g 76 -7.7 -4.20707 | overlap 1357128 1357134 TGGCACTAAAAAAGA CCAAG CAA CTTGG TGGAGTCGCAAGCCC SSU98_1422 1355707 - 1357851 + | Fe2+ transport system protein B TERM 1659 1358010 - 1358034 + T 71 -5 -4.71061 | gap 1, opp_overlap 1358010 CATCCATAACAAAAA GGTCTGCCTCA TTAT TGTG-CAGACC TTTTTACATGTAGCT TERM 1660 1358034 - 1358010 - T 79 -5 -5.20333 | gap 1, opp_overlap 1358010 CATCCATAACAAAAA GGTCTGCCTCA TTAT TGTG-CAGACC TTTTTACATGTAGCT SSU98_1423 1359015 - 1358056 - | cell division protein SSU98_1424 1359724 - 1358978 - | ATPase involved in cell division TERM 1661 1359625 - 1359647 + gr 72 -7.8 -3.68911 | overlap 1359642 GAAGGGCAGTCGTTC CGTTTCCA TATTTCT TGGAAACG TCTTTCATTTCTATT SSU98_1425 1360790 - 1359813 - | peptide chain release factor 2 TERM 1662 1360644 - 1360666 + g 70 -7.8 -3.68244 | opp_overlap 1360638 CCGCACAGACTCATC TTCTGCTAGA AAA TCTAGCAAAA TTTCAGATTCATCAT SSU98_1426 1360929 - 1360834 - | hypothetical protein SSU98_1427 1362079 - 1360943 - | hypothetical protein SSU98_1428 1362622 - 1362206 - | glycopeptide antibiotics resistance protein TERM 1663 1362674 - 1362659 - R 82 -7.6 -4.36914 | TGCTGTTCTATAAAA TGTCAC TTCT GTGACA AAGCTCGTTCCATAT TERM 1664 1362736 - 1362724 - R 70 -3.3 -5.00027 | ACTAAAAACAGAAAA GGAAG ACA CTACC AAGCCTCCCCTTATT SSU98_1429 1363184 - 1362768 - | hypothetical protein SSU98_1430 1363620 - 1363811 + | hypothetical protein TERM 1665 1363819 - 1363798 - T 95 -7.3 -5.39721 | opp_overlap 1363798 TCAGTACAGAAAAAA GCTCAGACC ACTA AATCTGAGC TTTTTCAAATGATAT TERM 1666 1363798 - 1363819 + T 76 -5.9 -4.63928 | opp_overlap 1363798 TCAGTACAGAAAAAA GCTCAGA CCACTAAA TCTGAGC TTTTTCAAATGATAT SSU98_1431 1366551 - 1363927 - | cation transport ATPase TERM 1667 1365461 - 1365471 + gT 73 -5.4 -4.614 | CCAATCAATTTACCA GTTG GGT CAAC TTTTGTATCGTTGGC SSU98_1432 1366651 - 1366523 - | hypothetical protein TERM 1668 1366686 - 1366660 - H 100 -13.2 -5.80003 | opp_overlap 1366631 1366630 1366659 1366658 CTAACAAATAAAAAA GAGACCTGTTTT ATT AAAACAAGTCTC GCTATTTAATATATT TERM 1669 1367238 - 1367210 - g 73 -5.3 -4.68593 | overlap 1367235 TCTACTACGCAAAAA GAGCTCAGCTTGA TTA TGAAGTTAAGCTC TCAGATTCGAGAACA SSU98_1433 1366939 - 1367748 + | hypothetical protein SSU98_1434 1367724 - 1368101 + | hypothetical protein TERM 1670 1368268 - 1368306 + F 73 -9 -3.43437 | opp_overlap 1368260 1368274, overlap 1368274 1368279 ATCAACATTTTTAGT CAAAAACAGAACTTAGTC TGA GACTAAATTCTGTTGATG TTATGCAGTTTTCTC TERM 1671 1368274 - 1368300 + F 82 -11 -3.42013 | opp_overlap 1368274, overlap 1368268 1368279 ATTTTTAGTCAAAAA CAGAACTTAGTC TGA GACTAAATTCTG TTGATGTTATGCAGT TERM 1672 1368300 - 1368274 - f 100 -13.2 -4.66163 | opp_overlap 1368274 1368268 1368279 ATTTTTAGTCAAAAA CAGAACTTAGTC TGA GACTAAATTCTG TTGATGTTATGCAGT TERM 1673 1368413 - 1368431 + F 83 -11.8 -3.06796 | opp_overlap 1368413, overlap 1368416 TCACAGACAAAAAAA GAACGACT ATC AGTCGTTC TTCAATAACATACGG TERM 1674 1368431 - 1368413 - f 100 -11.8 -5.76633 | opp_overlap 1368413 1368416 TCACAGACAAAAAAA GAACGACT ATC AGTCGTTC TTCAATAACATACGG TERM 1675 1368416 - 1368428 + F 72 -7.7 -3.68073 | opp_overlap 1368413, overlap 1368413 CAGACAAAAAAAGAA CGACT ATC AGTCG TTCTTCAATAACATA SSU98_1435 1368997 - 1369590 + | hypothetical protein TERM 1676 1369623 - 1369593 - f 79 -6.9 -4.4648 | gap 1, opp_overlap 1369598 1369599, overlap 1369599 ATTGTTAGGATAAAA TCATAACCACCCGT GAAA ACGGGTGGCT-TGT ACACCGGCTATAAGC TERM 1677 1369598 - 1369619 + F 78 -10.1 -3.29263 | opp_overlap 1369593 1369599, overlap 1369599 TAGGATAAAATCATA ACCACCCGT GAAA ACGGGTGGC TTGTACACCGGCTAT TERM 1678 1369599 - 1369618 + F 91 -13.6 -2.57344 | opp_overlap 1369593 1369599, overlap 1369598 AGGATAAAATCATAA CCACCCGT GAAA ACGGGTGG CTTGTACACCGGCTA TERM 1679 1369618 - 1369599 - f 100 -13.6 -3.73008 | opp_overlap 1369599 1369598, overlap 1369593 AGGATAAAATCATAA CCACCCGT GAAA ACGGGTGG CTTGTACACCGGCTA TERM 1680 1369628 - 1369640 + F 81 -9.1 -4.03234 | GGGTGGCTTGTACAC CGGCT ATA AGCCG TTTCTCTCCAGCGAC TERM 1681 1369727 - 1369712 - f 75 -10.4 -2.50291 | opp_overlap 1369712, overlap 1369711 AATTACTTGACTAAT GCCCGT AACA ACGGGC TTTTATCTTGTTCTA TERM 1682 1369712 - 1369727 + F 100 -10.4 -4.82162 | opp_overlap 1369712 1369711 AATTACTTGACTAAT GCCCGT AACA ACGGGC TTTTATCTTGTTCTA TERM 1683 1370093 - 1370079 - f 85 -2.8 -5.84381 | overlap 1370071 GCATGAAGAAAAAAA CGTTTT CAG AAAGCG AAAATCATAACCAAA TERM 1684 1370501 - 1370486 - g 73 -5.4 -4.65895 | overlap 1370490 CCGTTGACGGAAAAA CGATTC GGGG GAACCG AGGGAAACACCAATC SSU98_1436 1370263 - 1370676 + | transposase SSU98_1437 1370692 - 1371072 + | transposase SSU98_1438 1371073 - 1371279 + | transposase TERM 1685 1371593 - 1371627 + F 100 -10.6 -4.96848 | opp_overlap 1371592, overlap 1371600 ATGGAAACTCAAAGC CTTGGCAGCCACCAGC ATA GCTGGTGGCTTTCTTG TTTTTCTCTACGAGA TERM 1686 1371600 - 1371620 + G 100 -16.9 -4.80417 | opp_overlap 1371592, overlap 1371593 CTCAAAGCCTTGGCA GCCACCAGC ATA GCTGGTGGC TTTCTTGTTTTTCTC TERM 1687 1371661 - 1371647 - g 71 -4.2 -4.91109 | overlap 1371648 TCTCTACGAGAAAAA CTGGCT CGA AGCCAT AATAAAAAAACGGCT TERM 1688 1371693 - 1371672 - g 91 -3.7 -5.88565 | opp_overlap 1371686, overlap 1371673 GCCATAATAAAAAAA CGGCTTCAA ACGT TCGAAACCA TTTTGTTTTTTTATT TERM 1689 1371686 - 1371698 + G 93 -2.7 -6.01187 | opp_overlap 1371673 1371672 ACGGCTTCAAACGTT CGAAA CCA TTTTG TTTTTTTATTTAATT SSU98_1439 1371594 - 1371734 + | hypothetical protein SSU98_1440 1372048 - 1371704 - | metal-sulfur cluster biosynthetic protein TERM 1690 1372087 - 1372067 - R 81 -6.9 -4.55023 | overlap 1372071 1372080 TTCAATACTAGAAAA GAAACAAAC GAA GTTTGTGTC AAAAAGTCCACTGGA TERM 1691 1372083 - 1372071 - R 78 -6.3 -4.81357 | overlap 1372067 1372080 ATACTAGAAAAGAAA CAAAC GAA GTTTG TGTCAAAAAGTCCAC TERM 1692 1372103 - 1372093 - R 78 -6.8 -4.56775 | opp_overlap 1372100 AGTTTGTGTCAAAAA GTCC ACT GGAC GTTACGCTCCCTTTC SSU98_1441 1373314 - 1372196 - | RNA polymerase sigma factor RpoD TERM 1693 1373272 - 1373289 + g 93 -2.7 -5.9667 | CGGCAACTTGTACAT CAAAAGT AGTT ACTTCTG TTTTTTTATCTTTTT dnaG 1375107 - 1373317 - | DNA primase TERM 1694 1375314 - 1375328 + G 73 -8.6 -3.68936 | ATTTAAAAGCATTTT TGTTCC GTG GGAACA TTGTTGACCTTGCTG SSU98_1443 1375289 - 1375654 + | large-conductance mechanosensitive channel TERM 1695 1375669 - 1375655 - T 76 -5.8 -4.64763 | opp_overlap 1375668, overlap 1375667 TTATTGAAAAAATAA TCAATA ATA TATTGA AAAACAGGTCTCCAT TERM 1696 1375668 - 1375695 + T 84 -11.5 -3.12595 | opp_overlap 1375655 1375667 1375674, overlap 1375674 AATCAATAATATATT GAAAAACAGGT CTCCAT ACCTGTTTTTC TCTTCCATAATTACA TERM 1697 1375689 - 1375674 - T 74 -4.7 -4.74453 | opp_overlap 1375668 1375674, overlap 1375667 TAATATATTGAAAAA CAGGT CTCCAT ACCTG TTTTTCTCTTCCATA TERM 1698 1375674 - 1375689 + T 79 -4.7 -5.10767 | opp_overlap 1375674 1375667, overlap 1375668 TAATATATTGAAAAA CAGGT CTCCAT ACCTG TTTTTCTCTTCCATA TERM 1699 1375742 - 1375715 - T 89 -7.8 -5.01535 | opp_overlap 1375718, overlap 1375718 CCATAATTACAAAAA TAAGATGTGAGC CTCC ACTCACATCTTT TCTTATCCTTCGTAT TERM 1700 1375718 - 1375739 + T 100 -8.8 -4.84492 | opp_overlap 1375715 1375718 TAATTACAAAAATAA GATGTGAG CCTCCA CTCACATC TTTTCTTATCCTTCG TERM 1701 1375739 - 1375718 - T 91 -9.5 -4.58563 | opp_overlap 1375718, overlap 1375715 TAATTACAAAAATAA GATGTGAGC CTCC ACTCACATC TTTTCTTATCCTTCG SSU98_1444 1376776 - 1375745 - | UDP-glucose 4-epimerase TERM 1702 1376567 - 1376557 - G 73 -5.4 -4.59773 | overlap 1376559 TTTCATTTTCAAAAA CTTG GCG CAAG GCTTCCTTATCTGCC TERM 1703 1376848 - 1376835 - R 91 -5.9 -5.74086 | opp_overlap 1376835 AAAGTAAACAAAAAA CAGCC TTTC GGCCG TTTTCAAATTCAATT SSU98_1445 1377113 - 1376862 - | 30S ribosomal protein S21 SSU98_1446 1377785 - 1377534 - | hypothetical protein TERM 1704 1377698 - 1377686 - GR 74 -7.7 -3.92522 | TCTCAAGCGGATAAA CTAGC CAA GCTAG GTAGATGGTTCCTAG SSU98_1447 1378533 - 1377760 - | HAD family sugar phosphatase SSU98_1448 1379160 - 1378543 - | ADP-ribose pyrophosphatase SSU98_1449 1379887 - 1379147 - | hypothetical protein TERM 1705 1380086 - 1380074 - R 76 -7.7 -4.14764 | opp_overlap 1380070, overlap 1380070 1380069 1380079 TTGGAAATAAGGAAA CGAAG TTT CTTCG CTCGTCGAAGTAATA SSU98_1450 1381245 - 1380118 - | coproporphyrinogen III oxidase SSU98_1451 1381700 - 1381936 + | hypothetical protein TERM 1706 1381934 - 1381949 + T 79 -4.7 -5.13137 | opp_overlap 1381934, overlap 1381928 AGAATACAGAAAAAA TGACC CCGCAA GGTCA TTTTTAGTTTATTTA TERM 1707 1381949 - 1381934 - T 88 -5.4 -5.48787 | opp_overlap 1381934 1381928 AGAATACAGAAAAAA TGACCC CGCA AGGTCA TTTTTAGTTTATTTA SSU98_1452 1384338 - 1382071 - | maltodextrin phosphorylase SSU98_1453 1385226 - 1384513 - | purine-nucleoside phosphorylase SSU98_1454 1386068 - 1385259 - | purine nucleoside phosphorylase TERM 1708 1386004 - 1386017 + g 78 -5.3 -5.06414 | opp_overlap 1386004 ATCAAACCGAATTCA GGTTT TACC AAACC TTTTTCTTCCAAGAA SSU98_1455 1386436 - 1386080 - | arsenate reductase SSU98_1456 1387401 - 1386436 - | phosphopentomutase SSU98_1457 1387648 - 1387379 - | putative phosphopentomutase TERM 1709 1387933 - 1387975 + r 80 -6.4 -4.8743 | opp_overlap 1387934 1387940, overlap 1387934 1387940 TGTTTTCATTATACC ATAAAAACGCCTCTCATTGT ACC AAAATGAGAAGCGTTTTCAA TTTATTTCTTTTCGA TERM 1710 1387934 - 1387974 + r 80 -9.9 -3.50831 | opp_overlap 1387934 1387940, overlap 1387933 1387940 GTTTTCATTATACCA TAAAAACGCCTCTCATTGT ACC AAAATGAGAAGCGTTTTCA ATTTATTTCTTTTCG TERM 1711 1387974 - 1387934 - R 95 -14.3 -2.66316 | opp_overlap 1387934 1387933 1387940, overlap 1387940 GTTTTCATTATACCA TAAAAACGCCTCTCATTGT ACC AAAATGAGAAGCGTTTTCA ATTTATTTCTTTTCG TERM 1712 1387940 - 1387968 + r 90 -8.9 -4.45261 | opp_overlap 1387934 1387940, overlap 1387934 1387933 ATTATACCATAAAAA CGCCTCTCATTGT ACC AAAATGAGAAGCG TTTTCAATTTATTTC TERM 1713 1387968 - 1387940 - R 100 -11.1 -4.95758 | opp_overlap 1387940 1387934 1387933, overlap 1387934 ATTATACCATAAAAA CGCCTCTCATTGT ACC AAAATGAGAAGCG TTTTCAATTTATTTC SSU98_1458 1388651 - 1387977 - | ribose-5-phosphate isomerase A TERM 1714 1388145 - 1388159 + g 95 -7.2 -5.53288 | AATGATAAAGTTCTG CATATC CGT GATATG TTTTTTTCCATTACG TERM 1715 1388425 - 1388442 + g 73 -3.5 -5.0133 | gap 1, opp_overlap 1388427, overlap 1388428 ACCGTCAAGTCCACA TATTCGAC TTC GTCGA-TA TTTTTTAGGGGAATC TERM 1716 1388428 - 1388440 + g 76 -7.7 -4.13561 | opp_overlap 1388427, overlap 1388425 GTCAAGTCCACATAT TCGAC TTC GTCGA TATTTTTTAGGGGAA SSU98_1459 1388852 - 1389613 + | type I restriction-modification system, S subunit TERM 1717 1389621 - 1389606 - f 71 -4.7 -4.60255 | opp_overlap 1389606, overlap 1389616 ATAATGGTCGAAAAA GGAGA TGATAC TCTCC TTATGGGGAGATTCC TERM 1718 1389633 - 1389648 + F 100 -4 -6.48081 | CTCCTTATGGGGAGA TTCCGA GAAA TTGGAA TTTTTTTTTTGTCCA SSU98_1460 1389833 - 1390144 + | type I restriction-modification system, S subunit, putative SSU98_1461 1390860 - 1390168 - | type I restriction enzyme TERM 1719 1390575 - 1390589 + g 77 -6.4 -4.66953 | overlap 1390581 CCCAATAATTCGGCT CACTTC TTG GAGGTG TTTTTCCAATATTAA SSU98_1462 1391699 - 1390845 - | type I restriction-modification system, S subunit SSU98_1463 1392778 - 1391699 - | EcoE type I restriction modification enzyme M subunit SSU98_1464 1392948 - 1392775 - | Type I restriction-modification system methyltransferase subunit SSU98_1465 1393048 - 1392923 - | hypothetical protein SSU98_1466 1395499 - 1393175 - | EcoA type I restriction-modification enzyme R subunit TERM 1720 1393921 - 1393911 - G 71 -6.8 -4.08706 | TTTTCAGGATATAAA CGTG TTC CACG ACCAATAATCTGTTT TERM 1721 1394230 - 1394254 + g 73 -7.3 -4.12942 | CAAAGCGTGCATTAT TTTGTTTCATA TAA TCTGAAACAAA TTTTGCAACCTTTCG trmE 1395720 - 1397093 + | tRNA modification GTPase TrmE TERM 1722 1397102 - 1397125 + F 95 -10.4 -4.68132 | opp_overlap 1397102 AAAATAAGAACAAAA GTCATGTAAG AAAA CTTGCATGAC TTTATTTGTATATTA TERM 1723 1397125 - 1397102 - f 95 -8.2 -5.06116 | opp_overlap 1397102 AAAATAAGAACAAAA GTCATGTAAG AAAA CTTGCATGAC TTTATTTGTATATTA TERM 1724 1397307 - 1397317 + G 71 -3.2 -4.95957 | ACGATCACATTAACG TCGG AAG CTGA TTTTTACTTGATTTA SSU98_1468 1397187 - 1398281 + | hypothetical protein TERM 1725 1398309 - 1398348 + T 78 -10.2 -3.3247 | opp_overlap 1398309 1398316, overlap 1398316 AATCTCAATAAAGAT TGTAAAAGTCCCAAGA TGACTCTT TCTTGGGACTTTCGCA TATTCTATCGAAGTT TERM 1726 1398348 - 1398309 - T 75 -10.2 -2.8136 | opp_overlap 1398309 1398316, overlap 1398316 AATCTCAATAAAGAT TGTAAAAGTCCCAAGA TGACTCTT TCTTGGGACTTTCGCA TATTCTATCGAAGTT TERM 1727 1398341 - 1398316 - T 83 -9.1 -4.2243 | opp_overlap 1398316 1398309, overlap 1398309 ATAAAGATTGTAAAA GTCCCAAGA TGACTCTT TCTTGGGAC TTTCGCATATTCTAT TERM 1728 1398316 - 1398341 + T 78 -9.1 -3.68662 | opp_overlap 1398309 1398316, overlap 1398309 ATAAAGATTGTAAAA GTCCCAAGA TGACTCTT TCTTGGGAC TTTCGCATATTCTAT SSU98_1469 1400263 - 1398794 - | hypothetical protein SSU98_1470 1400856 - 1400275 - | hypothetical protein SSU98_1471 1401729 - 1400929 - | beta-propeller domain-containing protein SSU98_1472 1402355 - 1401777 - | Uracil-DNA glycosylase SSU98_1473 1402800 - 1402342 - | acetyltransferase TERM 1729 1402817 - 1402832 + r 80 -10.4 -3.40022 | opp_overlap 1402817 TTTCCTCCTAAAAAA GACGGG CGTA CCCGTC TTCATGTATTACTTA TERM 1730 1402832 - 1402817 - R 100 -10.4 -5.00616 | opp_overlap 1402817 TTTCCTCCTAAAAAA GACGGG CGTA CCCGTC TTCATGTATTACTTA SSU98_1474 1404241 - 1402841 - | dipeptidase PepV TERM 1731 1403149 - 1403177 + g 85 -6 -5.08824 | opp_overlap 1403151, overlap 1403151 CGCCCAGTTTTTCCA AACCAGCCTTGA TGGTT TCAGGGTTGGTA TTTTTTGGATAACGG TERM 1732 1403151 - 1403175 + g 79 -8.6 -4.17608 | opp_overlap 1403151, overlap 1403149 CCCAGTTTTTCCAAA CCAGCCTTGA TGGTT TCAGGGTTGG TATTTTTTGGATAAC TERM 1733 1403273 - 1403296 + g 78 -5.2 -5.06451 | AAGAGCTCCCATTTG CTCATCGTAG ATGG CTACGCCGAG TTTTTTAGCGTCATG TERM 1734 1403777 - 1403812 + g 73 -3.8 -5.03314 | overlap 1403779 ATCCATGTCCGCCCA GCCTGACTCTTCGTCG GTAC CGACGATGAAGCGGAC TTTTTTAGAGGTCGA TERM 1735 1404319 - 1404338 + r 71 -5 -4.64992 | opp_overlap 1404322, overlap 1404322 GTAAAGCGAAGAAAA AAAGTTGG TCTC CCAACTTC TTTCTATTTTTTCCA TERM 1736 1404322 - 1404335 + r 76 -6.7 -4.38412 | opp_overlap 1404322, overlap 1404319 AAGCGAAGAAAAAAA GTTGG TCTC CCAAC TTCTTTCTATTTTTT TERM 1737 1404335 - 1404322 - R 93 -6.7 -5.83226 | opp_overlap 1404319 1404322 AAGCGAAGAAAAAAA GTTGG TCTC CCAAC TTCTTTCTATTTTTT SSU98_1475 1405547 - 1404342 - | serine/threonine transporter SstT TERM 1738 1404397 - 1404386 - G 71 -4.4 -4.90525 | CAACTGTAAACAAAA CATC AGTT GATG AGTTGAGGGCTGCTT TERM 1739 1405896 - 1405871 - R 95 -10.5 -4.42238 | opp_overlap 1405871 GGATTGCAATGAAAA GCCCTGCCTTA TCAG TAAAGCAGGAC TTTGATGGCTCAAGA SSU98_1476 1406286 - 1405918 - | hypothetical protein SSU98_1477 1406463 - 1406326 - | hypothetical protein SSU98_1478 1407029 - 1406874 - | SAM-dependent methyltransferase SSU98_1479 1407651 - 1407001 - | SAM-dependent methyltransferase TERM 1740 1407774 - 1407759 - R 86 -5.4 -5.30448 | opp_overlap 1407759 AAAGAAAGAGAAAAA GCTACC TATC GATAGC TTTTAGTCTACGTCA SSU98_1480 1409326 - 1407782 - | hypothetical protein TERM 1741 1408362 - 1408380 + g 71 -6.6 -4.14243 | opp_overlap 1408361 1408362, overlap 1408363 GTCTGGAAGATAAAG CGGCTTGG CGT CCGAGCCA TTTTGAAATCAAATG TERM 1742 1408363 - 1408379 + g 74 -10.1 -3.08224 | opp_overlap 1408362 1408361, overlap 1408362 TCTGGAAGATAAAGC GGCTTGG CGT CCGAGCC ATTTTGAAATCAAAT TERM 1743 1409369 - 1409350 - R 76 -7.9 -4.10459 | opp_overlap 1409350 CACAACATCAAAGAA CTGGAGT AACCAA ACTCCAG TTTTTACTTTTATTC TERM 1744 1409350 - 1409369 + r 93 -7.9 -5.17786 | opp_overlap 1409350 CACAACATCAAAGAA CTGGAGT AACCAA ACTCCAG TTTTTACTTTTATTC SSU98_1481 1410845 - 1409490 - | phosphomannomutase SSU98_1482 1411565 - 1410852 - | hypothetical protein SSU98_1483 1412400 - 1411549 - | hypothetical protein TERM 1745 1412903 - 1412887 - g 100 -8 -5.74684 | opp_overlap 1412887 CAAGAAAAATAAAAA CGGCAA GAAGA TTGCCG TCTTGGAGATTGACG SSU98_1484 1412582 - 1413925 + | UDP-N-acetylmuramyl tripeptide synthase TERM 1746 1414242 - 1414195 - g 82 -2.1 -5.64274 | opp_overlap 1414200, overlap 1414197 1414199 TTACCGACAAAAAAA GACAGCCTAGCA-GACTTTATCG AAAA CGATGGCGTCATGCTA-GCTATC TGCGGTGGCTTCCAG SSU98_1485 1413925 - 1414713 + | glutamine amidotransferase TERM 1747 1414813 - 1414855 + T 100 -13.7 -2.91274 | opp_overlap 1414813 1414823, overlap 1414818 1414823 GAAGAGTATGAGAAA TAAAGCAAAACCGCTTCTG ATATC CAGAGGCGGTTTTATTTTA TATACTTCCAATCAA TERM 1748 1414855 - 1414813 - T 93 -12.2 -4.01853 | opp_overlap 1414813 1414818 1414823, overlap 1414823 GAAGAGTATGAGAAA TAAAGCAAAACCGCTTCTGA TAT CCAGAGGCGGTTTTATTTTA TATACTTCCAATCAA TERM 1749 1414818 - 1414850 + T 95 -11.4 -4.614 | opp_overlap 1414813 1414823, overlap 1414813 1414823 GTATGAGAAATAAAG CAAAACCGCTTCTG ATATC CAGAGGCGGTTTTA TTTTATATACTTCCA TERM 1750 1414823 - 1414845 + T 100 -11.3 -5.23292 | opp_overlap 1414813 1414823, overlap 1414818 1414813 AGAAATAAAGCAAAA CCGCTTCTG ATATC CAGAGGCGG TTTTATTTTATATAC TERM 1751 1414845 - 1414823 - T 100 -9.8 -4.74219 | opp_overlap 1414823 1414818 1414813, overlap 1414813 AGAAATAAAGCAAAA CCGCTTCTGA TAT CCAGAGGCGG TTTTATTTTATATAC SSU98_1486 1415680 - 1414853 - | SAM-dependent methyltransferase TERM 1752 1415638 - 1415616 - G 100 -15.6 -3.25341 | overlap 1415614 AGGTCAAGACCAAGA GCCTGCCCAC AAT GTGGACAGGC GAAAAATTGGTCGCT SSU98_1487 1416218 - 1415682 - | hypothetical protein TERM 1753 1416340 - 1416326 - R 86 -10 -4.15788 | AAGGTTGGGAATAAA GCGAAC AAA GTTCGC AACATTCGTTAGGCC SSU98_1488 1416549 - 1416454 - | hypothetical protein SSU98_1489 1418587 - 1416596 - | ABC transporter ATPase TERM 1754 1418577 - 1418558 - G 85 -5.7 -5.15634 | opp_overlap 1418558 GATTTCAGCAAAAAA CAGCGAC TTTACC GTCACTG TCCTTCTCAAAAAAT SSU98_1490 1419002 - 1418595 - | hypothetical protein SSU98_1491 1419630 - 1418971 - | Zn-dependent protease SSU98_1492 1420472 - 1419696 - | esterase TERM 1755 1420314 - 1420326 + g 78 -9.1 -3.74693 | TGTAGACCGATTGAG CCAGG AAT CCTGG TTTCCTCCCATACCG SSU98_1493 1422249 - 1420537 - | metallo-beta-lactamase superfamily hydrolase TERM 1756 1420867 - 1420845 - G 72 -9.2 -3.15544 | opp_overlap 1420863 TCTTACGGTCACGAA GGACGATATT TCC AACATCGCCC ATGGCATTTCCGTCA TERM 1757 1422211 - 1422231 + g 100 -7.6 -5.42605 | CATCTTTACTCCTTT TGGACATC CCACA GGTGTCCA TTTTATTTTTCTTAC TERM 1758 1422330 - 1422344 + r 81 -8.6 -4.11304 | opp_overlap 1422330 TACTTCGACGTAAGA GGAAAC TCC GTTTCC TTATTTCTAACTTCA TERM 1759 1422344 - 1422330 - R 70 -8.6 -3.08996 | opp_overlap 1422330 TACTTCGACGTAAGA GGAAAC TCC GTTTCC TTATTTCTAACTTCA TERM 1760 1422574 - 1422554 - R 100 -8.3 -5.35222 | opp_overlap 1422554 AAAATTTACAAAAAA CTCCGCTGA AAA TCAACGAAG TTCTACATATACATT SSU98_1494 1422962 - 1422588 - | hypothetical protein SSU98_1495 1423483 - 1422998 - | hypothetical protein TERM 1761 1423569 - 1423552 - R 88 -7.7 -4.86902 | opp_overlap 1423552 CAAAGGATAATAAAA GCCTGGA TTAC TCCAGAC TTTAGACCTGTATTC SSU98_1496 1424424 - 1423666 - | ABC-type uncharacterized transport system, ATPase component TERM 1762 1424380 - 1424398 + g 100 -9.6 -5.26875 | TTCATCAAAACCGTT TGTCACCA CCT TGGTGGCA TTTTTTAATTCAACA SSU98_1497 1425287 - 1424421 - | ABC-type uncharacterized transport system, permease component SSU98_1498 1426344 - 1425310 - | ABC-type uncharacterized transport system, periplasmic component TERM 1763 1426554 - 1426524 - RH 100 -13.3 -4.35874 | GAAGACAATGGAAAA GCCCCCGCAGG AAAAAACAA CCTGCGAGGGC GTCAATGACACGGTG SSU98_1500 1428492 - 1427068 - | Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase SSU98_1499 1428093 - 1428257 + | hypothetical protein SSU98_1501 1430348 - 1428507 - | phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific TERM 1764 1428819 - 1428806 - G 76 -6.7 -4.56597 | GTTTTGTTGGAAAAA GACTG GTAA CAGTC CCGTCAAATGGAGCA SSU98_1502 1431267 - 1430359 - | transcriptional antiterminator TERM 1765 1431279 - 1431226 - G 100 -9.3 -5.14698 | gap 1 AAACTTAAAATAAAA GAACCTACTTAAAAGAAATCGACA TATATCG TATCGAT-TCATTTAAATAGGTTC CTGCTCGCCTTAAAG TERM 1766 1431431 - 1431413 - H 70 -3.2 -4.94222 | overlap 1431404 AATAATTTATAAAAA TATAAGAA TAC TTCTTTTA GTCCCCTTCGTTAAA TERM 1767 1432093 - 1432045 - g 76 -10.5 -2.97475 | opp_overlap 1432044, overlap 1432044 TGTCTGACGAGAAAT TGTTTGAAATCTTATCGACTCAG GAA CTGAGTCCAAAAAATCTCCAACA GGTCTTTCAAGGTTT SSU98_1503 1431504 - 1433162 + | fibronectin/fibrinogen binding protein TERM 1768 1433175 - 1433143 - T 78 -6.5 -4.7033 | opp_overlap 1433148, overlap 1433148 CAACTGAAGATAAAA TAAAATCCATGAA AATCTAG TTCATGGATTTTT CTGTATTGAAGCCTA TERM 1769 1433170 - 1433148 - T 91 -6.4 -5.26907 | opp_overlap 1433148, overlap 1433143 GAAGATAAAATAAAA TCCATGAA AATCTAG TTCATGGA TTTTTCTGTATTGAA TERM 1770 1433148 - 1433170 + T 86 -6.4 -5.10064 | opp_overlap 1433143 1433148 GAAGATAAAATAAAA TCCATGAA AATCTAG TTCATGGA TTTTTCTGTATTGAA SSU98_1504 1433904 - 1433188 - | Alpha-acetolactate decarboxylase SSU98_1505 1435056 - 1433908 - | TPR repeat-containing protein TERM 1771 1435096 - 1435117 + r 76 -4.5 -5.17054 | GCCTTGTCTAAATCC TGTTGGT CCAAACAA ACCAACA TTTTTTCACTATTGT SSU98_1506 1436301 - 1435126 - | permease TERM 1772 1436963 - 1436947 - g 80 -8.7 -3.92324 | AAAGTAGAGAAAATA GCAACCT ATC AGGCTGC GCCAGGAAGTGGTCC SSU98_1507 1436428 - 1437432 + | 3-carboxymuconate cyclase SSU98_1508 1437445 - 1437681 + | hypothetical protein TERM 1773 1437694 - 1437717 + T 100 -8.2 -5.80003 | opp_overlap 1437694 TAATACATGTAAAAA CTAGGCTGAG AATG TTCAGTCTAG TTTTTTGTTTGTTCA TERM 1774 1437717 - 1437694 - T 75 -5.3 -4.74453 | opp_overlap 1437694 TAATACATGTAAAAA CTAGGCTGA GAATGT TCAGTCTAG TTTTTTGTTTGTTCA SSU98_1509 1438367 - 1437714 - | HAD superfamily hydrolase TERM 1775 1438454 - 1438444 - R 78 -5.4 -4.94058 | opp_overlap 1438444 TCAAGGCAAAGAAAA TTCC CTA GGAA TTTCAGTCTAGTTTT SSU98_1510 1438782 - 1438522 - | cytotoxic translational repressor of toxin-antitoxin stability system SSU98_1511 1439062 - 1438784 - | hypothetical protein TERM 1776 1439025 - 1439043 + g 100 -10.4 -4.65838 | TTCACCTCGCTTCTT TGTGTTAC ATT GTAACACA TTTTTAAAGTATCTG TERM 1777 1439101 - 1439075 - RH 79 -5.1 -5.18357 | opp_overlap 1439075 1439100, overlap 1439078 1439099 CAATCTATCAAAAAA GTACCTTGGGA TGATG CCCCAAAGTGC CTTATATCAAGGCTT TERM 1778 1439178 - 1439139 - RH 76 -7.5 -4.17516 | gap 2, opp_overlap 1439145 1439148 1439151, overlap 1439145 1439148 CTTAAATCATATAAA GTCAAAGAACAAGTCCGAA TATT TTCAGACTTGTTCTT--AC TATATCCCTCACTAT TERM 1779 1439145 - 1439174 + rH 89 -12.3 -3.32993 | opp_overlap 1439139 1439145 1439148, overlap 1439148 1439151 TCATATAAAGTCAAA GAACAAGTCCGAA TATT TTCAGACTTGTTC TTACTATATCCCTCA TERM 1780 1439174 - 1439145 - RH 100 -14.5 -3.91402 | opp_overlap 1439145 1439148 1439151, overlap 1439139 1439148 TCATATAAAGTCAAA GAACAAGTCCGAA TATT TTCAGACTTGTTC TTACTATATCCCTCA TERM 1781 1439148 - 1439171 + rH 74 -8.2 -3.80018 | opp_overlap 1439145 1439139 1439148, overlap 1439145 1439151 TATAAAGTCAAAGAA CAAGTCCGAA TATT TTCAGACTTG TTCTTACTATATCCC TERM 1782 1439171 - 1439148 - RH 89 -10.4 -4.06633 | opp_overlap 1439148 1439145 1439151, overlap 1439145 1439139 TATAAAGTCAAAGAA CAAGTCCGAA TATT TTCAGACTTG TTCTTACTATATCCC TERM 1783 1439234 - 1439257 + rH 100 -14 -3.7732 | opp_overlap 1439234, overlap 1439237 CTGTACTACGAAAAA CAAGTCTGGA AATT TCCAGACTTG TTCTTACTATAACCC TERM 1784 1439257 - 1439234 - RH 100 -14 -4.77036 | opp_overlap 1439234 1439237 CTGTACTACGAAAAA CAAGTCTGGA AATT TCCAGACTTG TTCTTACTATAACCC TERM 1785 1439237 - 1439254 + rH 86 -9.9 -4.0156 | opp_overlap 1439234, overlap 1439234 TACTACGAAAAACAA GTCTGGA AATT TCCAGAC TTGTTCTTACTATAA TERM 1786 1439293 - 1439317 + rH 100 -13.1 -5.11033 | opp_overlap 1439298, overlap 1439298 ATGCTAGCTCAGGGA TAAAACAGTCT CCC AGACTGTTTTA TTTTTTCAAGTTGTA TERM 1787 1439298 - 1439312 + rH 100 -8.6 -5.42198 | opp_overlap 1439298, overlap 1439293 AGCTCAGGGATAAAA CAGTCT CCC AGACTG TTTTATTTTTTCAAG TERM 1788 1439312 - 1439298 - RH 90 -8.6 -4.42653 | opp_overlap 1439298 1439293 AGCTCAGGGATAAAA CAGTCT CCC AGACTG TTTTATTTTTTCAAG eno 1440622 - 1439315 - | phosphopyruvate hydratase TERM 1789 1440404 - 1440424 + gH 71 -4.7 -4.65895 | overlap 1440381 AGCGTCAGCAATCAC GTTGTTCAC GTT GTCAACAGC TTTTTGAGTACCAAG SSU98_1512 1440616 - 1440753 + | hypothetical protein TERM 1790 1441200 - 1441182 - g 95 -5.3 -5.89921 | opp_overlap 1441182, overlap 1441196 ACCAGAAGAAAAAAA GGAAGAT GCAAA ACCTTCC TTCTGGAAAAAATTA SSU98_1514 1440772 - 1441224 + | hypothetical protein SSU98_1515 1442578 - 1441451 - | glycerate kinase TERM 1791 1441495 - 1441517 + g 100 -9.8 -5.77632 | GAAGAATTCTTGCCA CCTGCTCTGC CGT GCGGACCAGG TTTTTTTCTGCTTTT TERM 1792 1441985 - 1441997 + g 71 -9.1 -3.3164 | opp_overlap 1441993 1441994 TGTGGCACCCGCTGG TCCGC AAA GCGGA TTCTCCACATCCGTT SSU98_1516 1442686 - 1443336 + | phosphatase TERM 1793 1443452 - 1443474 + T 82 -10.6 -3.55444 | TCTGACCTCTATGAC TGATGCGAAC AGA GTTCGCTTCA TTTCCAACCTCAAAC TERM 1794 1443489 - 1443503 + T 75 -8.6 -3.63627 | opp_overlap 1443489 ATTTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG TERM 1795 1443503 - 1443489 - T 78 -8.6 -3.66356 | opp_overlap 1443489 ATTTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG SSU98_1517 1445116 - 1443773 - | transposase TERM 1796 1443857 - 1443897 + g 100 -11.9 -5.05505 | GAGACGATGTATGGA GGCAATCGTGTGCGGCTTC GTT GAAGTCGTTTGCGATTGTC TTTTTCGTTTCTCAT TERM 1797 1444273 - 1444293 + g 77 -6.2 -4.63218 | gap 1, opp_overlap 1444273 TTGCATAGTAATGCA CCTCTTCCA GTAT TGGA-GAGG TTTTCTTGACGGCAC TERM 1798 1445203 - 1445165 - R 78 -3.9 -5.40464 | gap 1, opp_overlap 1445178 1445201, overlap 1445139 1445142 1445141 1445159 TATCATAAAGAAAAA GTAGTGAGTACTTTCTCC CGTC GGAGATT-TCCTCACTAC TAATCTTAGTATGTT TERM 1799 1445266 - 1445285 + r 88 -5.1 -5.77856 | opp_overlap 1445266 ATTTACTATCTAAAA TCTCTAT TAGTTT ATAGAGA TTTTTTTCATTTATT SSU98_1518 1445923 - 1445249 - | phosphoserine phosphatase TERM 1800 1445913 - 1445934 + g 75 -10.3 -2.78816 | opp_overlap 1445913 TTCAATGTATAAAAA TAAAAAGCC AAAT GGCTTTTTA TCTAGTAGCGAATGG TERM 1801 1445934 - 1445913 - G 100 -10.3 -4.91712 | opp_overlap 1445913 TTCAATGTATAAAAA TAAAAAGCC AAAT GGCTTTTTA TCTAGTAGCGAATGG SSU98_1519 1447660 - 1445936 - | septation ring formation regulator EzrA SSU98_1520 1449335 - 1447749 - | DNA gyrase TERM 1802 1448754 - 1448764 + g 85 -4 -5.42605 | CAAATTATCCTCATT TTCT TTG AGAA TTTTATTTTTCTTGG SSU98_1521 1449699 - 1449319 - | DNA gyrase B subunit TERM 1803 1449405 - 1449416 + g 85 -5.8 -5.17353 | AGACAGTTTCTACCG CTGG ACGA CCAG TTTTTTCCTGAATAT TERM 1804 1449871 - 1449846 - R 84 -4.7 -5.36441 | TTTTGATAGAAAAAA GAAGAGGAAAC ATTA GCTCCATCTTC TTCATTACTTTAACT SSU98_1522 1450429 - 1449881 - | putative intracellular protease/amidase TERM 1805 1450032 - 1450042 + g 79 -3.2 -5.30616 | TCCAGATGAATACCT GACG GAA TGTC TTTTTCTTTCCCTGG SSU98_1523 1451663 - 1450434 - | rod shape determining protein TERM 1806 1451259 - 1451247 - G 72 -7.7 -3.79882 | ATAATATTTATGAAA GGTGA CAA TCACC CTTGACAACATAATG TERM 1807 1452054 - 1452040 - R 100 -10 -5.65927 | GAGTCAAAGAAAAAA TGGTCC ACT GGACCA TAACTCGCTCTTTTA TERM 1808 1452082 - 1452114 + r 95 -13 -3.55815 | opp_overlap 1452090, overlap 1452090 TTATTTTCAAGCTCG TGAAAAAACAGTCC GTTAA GGACTGTTTTTTTA TTTGAGACCGTATTT TERM 1809 1452090 - 1452106 + r 100 -8 -5.95539 | opp_overlap 1452090, overlap 1452082 AAGCTCGTGAAAAAA CAGTCC GTTAA GGACTG TTTTTTTATTTGAGA TERM 1810 1452106 - 1452090 - R 89 -8 -5.01732 | opp_overlap 1452090 1452082 AAGCTCGTGAAAAAA CAGTCC GTTAA GGACTG TTTTTTTATTTGAGA TERM 1811 1452335 - 1452349 + r 86 -4.2 -5.60864 | opp_overlap 1452327, overlap 1452327 AATAATATACAAAAA GTTGGT ATT GCCAGC TTTTTTTAATGTCTA SSU98_1524 1453699 - 1453127 - | prophage LambdaSa2, site-specific recombinase phage integrase family protein TERM 1812 1454107 - 1454138 + r 83 -7.4 -4.84921 | opp_overlap 1454116 GGCTGTTGGGGTTTC GTCACTACACTTTT TCTA AAAAGTGTTGTAAC TTATTTTTTCTTATA SSU98_1525 1455671 - 1454139 - | virulence-associated protein E SSU98_1526 1456258 - 1455686 - | hypothetical protein SSU98_1527 1456451 - 1456251 - | hypothetical protein TERM 1813 1456694 - 1456718 + rH 74 -4.2 -4.96427 | TTAACTTCTATACCT CGGCTTCTAG CAATA CTTCAAGCCG TTTCTTTTCTTCTTC SSU98_1529 1457003 - 1456686 - | hypothetical protein TERM 1814 1456820 - 1456834 + Gg 71 -5 -4.58213 | overlap 1456822 GATTGCCTTTGCGGT TGCCAA TAA TTGGTA TTTTATGCTTGATTA SSU98_1528 1456776 - 1456889 + | hypothetical protein TERM 1815 1456915 - 1456925 + gT 71 -4.6 -4.67353 | TGTGCTATGTGGCGC GCCG TGA TGGC TTTTTCAATCCCTAC TERM 1816 1457028 - 1457047 + Tr 100 -10.6 -4.74453 | GTATTTCTGGTATTA GCTCGCGC GGTG GCGCGTGC TTTTTCCGTGTGTTG SSU98_1530 1457620 - 1457357 - | hypothetical protein TERM 1817 1457496 - 1457513 + g 76 -2.6 -5.27938 | overlap 1457497 TATAACTCCATTACT TCCCCT TGTCGT AGGGGC TTTTTGTTTAGCCGT TERM 1818 1457658 - 1457670 + r 100 -2.6 -6.37666 | overlap 1457657 TATGCCGCCTAAAAT CGTC TATAC GGCG TTTTTTTTATTTTCT SSU98_1531 1458186 - 1457752 - | unknown phage protein SSU98_1532 1458487 - 1458227 - | hypothetical protein SSU98_1533 1458695 - 1458474 - | hypothetical protein SSU98_1534 1458934 - 1458692 - | hypothetical protein SSU98_1535 1459131 - 1458931 - | hypothetical protein SSU98_1536 1459432 - 1459121 - | hypothetical protein TERM 1819 1459430 - 1459443 + g 86 -8.1 -4.59489 | GTATTTCCTTTCTAG CACGC GCCT GCGTG TTTATTCTTTGGATT TERM 1820 1459510 - 1459538 + r 73 -3.2 -5.10004 | overlap 1459511 1459513 1459529 1459531 TTTTGTCGTTGGTCG TAGTTTTAAGGG GTACG CCCTTAAAATGG TTTTTAGTTCTTTTT TERM 1821 1459513 - 1459535 + r 76 -9.3 -3.35029 | overlap 1459511 1459510 1459529 1459531 TGTCGTTGGTCGTAG TTTTAAGGG GTACG CCCTTAAAA TGGTTTTTAGTTCTT TERM 1822 1459608 - 1459632 + r 86 -6.5 -5.09426 | opp_overlap 1459596 1459612 AAATAGCCATTGTAA GATAGCTAG AATGTGC CTAGCTGTC TTTTTTAGGGTTAGA SSU98_1537 1459917 - 1459729 - | transcriptional regulator SSU98_1538 1460069 - 1460590 + | transcriptional regulator TERM 1823 1460616 - 1460595 - f 84 -4.3 -5.46276 | AAGACACATAAAAAA CGCAAACCC CAGC AGGTCGGCG CGTGGAATAAATCAA SSU98_1539 1460646 - 1461338 + | Gp21 protein TERM 1824 1461529 - 1461551 + F 78 -5.6 -5.01823 | overlap 1461524 TTGTCATTACAAAAA GGTGGAATAG TTT TTATTCTGCC TTTTATTGTTATTCT TERM 1825 1461605 - 1461584 - f 91 -10.1 -4.66609 | GATGTTACGGAAAAA CGCCAACCC CAGC AGGTCGGCG CGTGGAAATATACAA TERM 1826 1461731 - 1461706 - f 91 -6.8 -5.40004 | opp_overlap 1461707, overlap 1461707 CACTAAATCAAAAAA GCCCCCAACG TGCCAG CGTTGAGGGT TTTTGTTTGCCCCTG TERM 1827 1461707 - 1461730 + F 100 -8.8 -5.27938 | opp_overlap 1461706 1461707 ACTAAATCAAAAAAG CCCCCAACGT GCCA GCGTTGAGGG TTTTTGTTTGCCCCT TERM 1828 1461730 - 1461707 - f 86 -10.3 -3.82375 | opp_overlap 1461707, overlap 1461706 ACTAAATCAAAAAAG CCCCCAACG TGCCAG CGTTGAGGG TTTTTGTTTGCCCCT TERM 1829 1462579 - 1462552 - g 78 -2.1 -5.58051 | gap 1 AAAGAAAAAAGAAAA CTTTTACA-GCC GTGAA GACTTGCAAAAG TTCCTAGACTGCGTA TERM 1830 1462808 - 1462783 - g 77 -3.9 -5.10154 | ACCCAAAACCAAAAA GAGTAAGCGCA CTAT CACGCTGACCC TATTACCGTGTCTAT SSU98_1540 1462025 - 1462828 + | prophage Lp3 protein 1, integrase SSU98_1541 1462970 - 1463164 + | integrase TERM 1831 1463229 - 1463207 - T 100 -10.6 -5.27023 | opp_overlap 1463210 ATTTCAAAAAGAAAA CCATTCCCAC GGC ACGGGAATGG CTTAAAATCAACGTT rpmE2 1463509 - 1463267 - | 50S ribosomal protein L31 type B TERM 1832 1463482 - 1463500 + g 84 -3.9 -5.46698 | TGAAGACAACAGTGC GATATTC TGGAT GGATATC TTTTTTCATTTTAAA SSU98_1543 1464656 - 1463628 - | lipoprotein involved thiamine biosynthesis SSU98_1544 1465587 - 1464643 - | hypothetical protein TERM 1833 1464744 - 1464756 + g 75 -9.1 -3.60006 | CTAGTGGGTGGCCAC CGCCA TCA TGGCG TTTGGCAATCTCGTT TERM 1834 1464903 - 1464887 - G 70 -7.9 -3.65415 | opp_overlap 1464884, overlap 1464883 CCAACGATAAAGGAA GTGTCCG CAT CGGTCAC CCCGTATTTTTCGAG SSU98_1545 1465652 - 1466143 + | putative flavodoxin TERM 1835 1466152 - 1466180 + F 81 -5.4 -5.10163 | gap 1 GAATTAACTGACAAA CAGACT-GGCTTA TCAA TAGGTCTAGTCTG TTTTCTTTTAGCCTT SSU98_1546 1466285 - 1466554 + | 30S ribosomal protein S14 TERM 1836 1466559 - 1466543 - f 78 -3.7 -5.40072 | CCTGGGGTAAAAAAA GCAAGTT GGT AACTTCC TCAAACAAGGCTAGT TERM 1837 1466565 - 1466585 + F 83 -6.2 -5.23316 | gap 1, opp_overlap 1466565 1466568 GGTAACTTCCTCAAA CAAGGCTAG TATT CT-GCCTTG TTTTTTGCTATACTA SSU98_1547 1466636 - 1466914 + | chorismate mutase SSU98_1548 1466904 - 1468118 + | hypothetical protein TERM 1838 1468129 - 1468097 - T 78 -8.6 -3.78904 | opp_overlap 1468099 1468106, overlap 1468106 GAGGAAATTCAATAA TGCAAAAAAGCCTA TCATC TAGGCTTTTTCGTA TACTCTTCATCTCCC TERM 1839 1468099 - 1468127 + T 70 -9 -2.94062 | opp_overlap 1468097 1468106, overlap 1468106 GGAAATTCAATAATG CAAAAAAGCCTA TCATC TAGGCTTTTTCG TATACTCTTCATCTC TERM 1840 1468106 - 1468120 + T 75 -5.7 -4.83269 | opp_overlap 1468097 1468106, overlap 1468099 CAATAATGCAAAAAA GCCTA TCATC TAGGC TTTTTCGTATACTCT TERM 1841 1468120 - 1468106 - T 81 -5.7 -5.2166 | opp_overlap 1468106 1468099, overlap 1468097 CAATAATGCAAAAAA GCCTA TCATC TAGGC TTTTTCGTATACTCT SSU98_1549 1470437 - 1468467 - | putative 5'-nucleotidase TERM 1842 1468500 - 1468529 + g 71 -4.3 -4.91084 | AGGGCTTCTTGACCG GTATTTGGAAGTC GTTT GATTTCCTGATGC TTTTTCAGTTTTCTT TERM 1843 1470685 - 1470666 - R 100 -10.8 -5.32944 | opp_overlap 1470665 1470664 CTCACAACTAAAAAA TCTCTTCC AAAC GGAAGAGA ACTGTTCTTATTTAG SSU98_1550 1471298 - 1470693 - | manganese-dependent superoxide dismutase holA 1472442 - 1471411 - | DNA polymerase III subunit delta TERM 1844 1472505 - 1472481 - R 82 -6.4 -4.91511 | opp_overlap 1472481 ATTGTACCACAAAAA GAGCCTAGAC ATAAA GTCTGGACTC TTTCATTGAAATTTA SSU98_1552 1473183 - 1472593 - | hypothetical protein SSU98_1553 1474071 - 1473292 - | hypothetical protein TERM 1845 1474167 - 1474154 - R 95 -8.1 -4.74103 | opp_overlap 1474154 TTTCCAACTTAAAAA GGTCC CGTC GGACC TTGATATAAAGAAAA TERM 1846 1474201 - 1474178 - R 79 -8.2 -4.04206 | overlap 1474184 GGACCTTGATATAAA GAAAAACGCC TGCC GACGTTTCTC ATCTCCAGCTTAAAA TERM 1847 1474195 - 1474184 - R 81 -3.6 -5.42975 | overlap 1474178 TGATATAAAGAAAAA CGCC TGCC GACG TTTCTCATCTCCAGC TERM 1848 1474239 - 1474262 + r 72 -9.6 -2.73124 | opp_overlap 1474239 1474244, overlap 1474244 TAACCCACTTGTAAA GAAAACCGCT TACC AGCGGTTCTC ATTTCCAACCTAAAA TERM 1849 1474262 - 1474239 - R 87 -11.8 -3.58269 | opp_overlap 1474239 1474244, overlap 1474244 TAACCCACTTGTAAA GAAAACCGCT TACC AGCGGTTCTC ATTTCCAACCTAAAA TERM 1850 1474244 - 1474257 + r 72 -8.1 -3.60151 | opp_overlap 1474239 1474244, overlap 1474239 CACTTGTAAAGAAAA CCGCT TACC AGCGG TTCTCATTTCCAACC TERM 1851 1474257 - 1474244 - R 95 -8.1 -4.87803 | opp_overlap 1474244 1474239, overlap 1474239 CACTTGTAAAGAAAA CCGCT TACC AGCGG TTCTCATTTCCAACC TERM 1852 1474292 - 1474278 - R 73 -6.4 -4.27584 | ATTTCCAACCTAAAA CAACCC GTC AGGTTG GGGACAAACCAGCAA TERM 1853 1474294 - 1474326 + r 75 -10.1 -2.89742 | gap 1, opp_overlap 1474301, overlap 1474301 AACCCGTCAGGTTGG GGACAAACCAGCAA CATGCA TTGCTGGTTT-TCC TATCTCCCGATTAAA TERM 1854 1474301 - 1474320 + r 82 -7.9 -4.39166 | opp_overlap 1474301, overlap 1474294 CAGGTTGGGGACAAA CCAGCAA CATGCA TTGCTGG TTTTCCTATCTCCCG TERM 1855 1474320 - 1474301 - R 80 -8.6 -3.86015 | opp_overlap 1474294 1474301 CAGGTTGGGGACAAA CCAGCAAC ATGC ATTGCTGG TTTTCCTATCTCCCG TERM 1856 1474366 - 1474379 + r 74 -8.1 -3.68761 | opp_overlap 1474366 CCGAATATAAAAAAA CTGCC TGCC GGCAG TTCTCATTTTCAACT TERM 1857 1474379 - 1474366 - R 100 -8.1 -5.80817 | opp_overlap 1474366 CCGAATATAAAAAAA CTGCC TGCC GGCAG TTCTCATTTTCAACT TERM 1858 1474422 - 1474445 + r 72 -9.6 -2.73124 | opp_overlap 1474422 1474427, overlap 1474427 TAACCCACTTATAAA GAAAACCGCT TACC AGCGGTTCTC ATTTCCAACCTAAAA TERM 1859 1474445 - 1474422 - R 91 -11.8 -3.93583 | opp_overlap 1474422 1474427, overlap 1474427 TAACCCACTTATAAA GAAAACCGCT TACC AGCGGTTCTC ATTTCCAACCTAAAA TERM 1860 1474427 - 1474440 + r 72 -8.1 -3.60151 | opp_overlap 1474422 1474427, overlap 1474422 CACTTATAAAGAAAA CCGCT TACC AGCGG TTCTCATTTCCAACC TERM 1861 1474440 - 1474427 - R 95 -8.1 -5.0065 | opp_overlap 1474427 1474422, overlap 1474422 CACTTATAAAGAAAA CCGCT TACC AGCGG TTCTCATTTCCAACC TERM 1862 1474462 - 1474474 + r 90 -9.1 -4.56597 | opp_overlap 1474462 TTTCCAACCTAAAAA GGTCC CCC GGACC TTTTTAGCCACCCAG TERM 1863 1474474 - 1474462 - R 100 -9.1 -4.74103 | opp_overlap 1474462 TTTCCAACCTAAAAA GGTCC CCC GGACC TTTTTAGCCACCCAG SSU98_1554 1475188 - 1474478 - | ABC-type branched-chain amino acid transport system, ATPase component TERM 1864 1474715 - 1474691 - G 72 -9.3 -3.08187 | opp_overlap 1474684 AAAGATCGGAGCCAA GCCCATTGATG GTT CATCAAGGAGC AAGAGCTTTGGTTGG SSU98_1555 1475952 - 1475188 - | ABC-type branched-chain amino acid transport system, ATPase component SSU98_1556 1476899 - 1475952 - | ABC-type branched-chain amino acid transport system, permease component SSU98_1557 1477789 - 1476902 - | branched chain amino acid ABC transporter permease TERM 1865 1477978 - 1477991 + r 81 -8.1 -4.28018 | opp_overlap 1477971 1477978 CTGACAAGTGAAAAA GAGGG AATT CCCTC TTTTCATCCACTATT TERM 1866 1477991 - 1477978 - R 95 -8.1 -4.78149 | opp_overlap 1477978, overlap 1477971 CTGACAAGTGAAAAA GAGGG AATT CCCTC TTTTCATCCACTATT SSU98_1558 1479147 - 1478005 - | hypothetical protein TERM 1867 1479272 - 1479260 - R 100 -3.5 -6.28401 | CAAAAAAGAAAAAAA TTTTA AAA TAAAA AATTAGCAGGGAATA TERM 1868 1479299 - 1479275 - R 100 -7.2 -5.79595 | opp_overlap 1479278 TTTTAAAATAAAAAA TTAGCAGGGA ATACA TACCTGCTAA TTCCGACTATCCTAC SSU98_1559 1479578 - 1479306 - | hypothetical protein TERM 1869 1479665 - 1479637 - R 90 -9 -4.64383 | gap 1 AATGATAAATGAAAA GCTCCAACTACCT GTAA AAG-AGTTGGAGC TAATAGGAATAGTCA clpP 1480295 - 1479705 - | ATP-dependent Clp protease proteolytic subunit TERM 1870 1480407 - 1480387 - R 100 -10.5 -5.01811 | opp_overlap 1480380 1480387 1480391 TCAGGAAATGAAAAA GAAACCAGC AGA GCTGATTTC TTAATTATTTTGTAC TERM 1871 1480387 - 1480407 + r 74 -8.3 -3.72078 | opp_overlap 1480387, overlap 1480380 1480391 TCAGGAAATGAAAAA GAAACCAGC AGA GCTGATTTC TTAATTATTTTGTAC upp 1481107 - 1480412 - | uracil phosphoribosyltransferase SSU98_1562 1482738 - 1481122 - | glycosidase TERM 1872 1482791 - 1482781 - R 76 -4.6 -5.13741 | opp_overlap 1482775 1482781, overlap 1482775 TTAATGTAAGAAAAA GAGG TGT CCCC CTCTTTCTATATAAT SSU98_1563 1484259 - 1482811 - | glycosidase TERM 1873 1483516 - 1483526 + g 70 -5.4 -4.4767 | ATAAACATAATAATC TTGC TCG GCAA TTTTCTGCTGAATGG TERM 1874 1484322 - 1484306 - R 76 -6.6 -4.4009 | opp_overlap 1484306 TGTTATTTTATAAAA GGTTGA ACTAG TCAACC TTAGTAATTATTTGA SSU98_1564 1485181 - 1484330 - | ABC-type sugar transport system, permease component SSU98_1565 1486051 - 1485362 - | ABC-type sugar transport system, permease component SSU98_1566 1487418 - 1486183 - | ABC-type sugar transport system, periplasmic component TERM 1875 1487393 - 1487405 + g 71 -4.9 -4.72729 | overlap 1487398 GCACAAACCGATGCA CATTT TAA AAATG TTTTCATTTTCATTA SSU98_1567 1489605 - 1487431 - | Alpha-galactosidase TERM 1876 1487599 - 1487615 + g 73 -5.1 -4.61231 | opp_overlap 1487583, overlap 1487586 ATGAAGCAAAGGCGC TTCTGGC TTG GCAAGAA TTTTTACAAATGTAA SSU98_1568 1489668 - 1490000 + | AraC-type DNA-binding domain-containing protein SSU98_1569 1489972 - 1490550 + | AraC-type DNA-binding domain-containing protein TERM 1877 1490586 - 1490531 - T 82 -6.5 -4.93318 | opp_overlap 1490541, overlap 1490533 1490541 CAGAATTTAGAAAAA CACAAAAAAATAAGGATTAGGTG ATTTTACTCA CACCTAGTCCTTATTTCTTTATC CAAAAACCTTACCAA TERM 1878 1490584 - 1490533 - T 81 -9.1 -4.07789 | opp_overlap 1490541, overlap 1490531 1490541 GAATTTAGAAAAACA CAAAAAAATAAGGATTAGGTG ATTTTACTCA CACCTAGTCCTTATTTCTTTA TCCAAAAACCTTACC TERM 1879 1490576 - 1490541 - T 100 -6.3 -5.9667 | opp_overlap 1490541, overlap 1490533 1490531 AAAAACACAAAAAAA TAAGGATTAGGTG ATTTTACTCA CACCTAGTCCTTA TTTCTTTATCCAAAA TERM 1880 1490541 - 1490576 + T 88 -8.5 -4.55295 | opp_overlap 1490541 1490533 1490531 AAAAACACAAAAAAA TAAGGATTAGGTG ATTTTACTCA CACCTAGTCCTTA TTTCTTTATCCAAAA SSU98_1570 1491742 - 1490582 - | bifunctional beta-cystathionase/maltose regulon repressor SSU98_1571 1492837 - 1491746 - | cystathionine gamma-synthase SSU98_1572 1493030 - 1493305 + | hypothetical protein SSU98_1573 1493319 - 1493573 + | hypothetical protein SSU98_1574 1493583 - 1493834 + | hypothetical protein TERM 1881 1493985 - 1494009 + F 74 -4.8 -4.87803 | opp_overlap 1493984 CGAACACTGAGAAGT GGGCCAGGGC TTTTT GCCCAGCCTC TTTTCTTTCAAAATA SSU98_1575 1494029 - 1494811 + | O-methyltransferase SSU98_1576 1494789 - 1495070 + | endonuclease SSU98_1577 1495039 - 1495428 + | hypothetical protein TERM 1882 1495435 - 1495418 - T 95 -7.7 -5.33848 | opp_overlap 1495418, overlap 1495407 AGGACAAGCAAAAAA CTGGCTC TTAG GAACCAG TTTTTTAATAGCTTT TERM 1883 1495418 - 1495435 + T 81 -5.5 -5.19261 | opp_overlap 1495418 1495407 AGGACAAGCAAAAAA CTGGCTC TTAG GAACCAG TTTTTTAATAGCTTT SSU98_1578 1496051 - 1495440 - | Acyl carrier protein phosphodiesterase TERM 1884 1496111 - 1496129 + r 78 -9 -3.72576 | opp_overlap 1496127 ATATTCTACTCTTTT TGATTTGA AAT TCAAATCA TTTGCTCGAAGCAAA TERM 1885 1496140 - 1496166 + r 90 -7.3 -5.23016 | gap 1, opp_overlap 1496130 1496127 1496146, overlap 1496144 1496146 AATCATTTGCTCGAA GCAAAAGGCTGG TCTC CCAGCC-TCTGC TTTTTTAGATTGTTT TERM 1886 1496161 - 1496146 - R 95 -10.4 -4.4078 | opp_overlap 1496144 1496140 1496146, overlap 1496127 TTGCTCGAAGCAAAA GGCTGG TCTC CCAGCC TCTGCTTTTTTAGAT TERM 1887 1496146 - 1496161 + r 79 -10.4 -3.25779 | opp_overlap 1496127 1496146, overlap 1496144 1496140 TTGCTCGAAGCAAAA GGCTGG TCTC CCAGCC TCTGCTTTTTTAGAT SSU98_1579 1496591 - 1496184 - | histone acetyltransferase HPA2-like acetyltransferase TERM 1888 1496694 - 1496713 + r 76 -6.4 -4.37092 | opp_overlap 1496694 TTAGTATAACAAAAA CTGCTCCA ATTA TGAAGCAG TTTTGTAACGACGAT TERM 1889 1496713 - 1496694 - R 100 -8.6 -5.22006 | opp_overlap 1496694 TTAGTATAACAAAAA CTGCTCCA ATTA TGAAGCAG TTTTGTAACGACGAT SSU98_1580 1496978 - 1496703 - | integral membrane protein SSU98_1581 1497319 - 1496987 - | integral membrane protein SSU98_1582 1497569 - 1497291 - | transcriptional regulator TERM 1890 1497588 - 1497613 + r 76 -10.7 -2.72677 | opp_overlap 1497603, overlap 1497587 AAGCCTCCTTGTCCA TCTATTTAGAA ATAT TTCTAAATAGA ATTATACTCTGTTTT TERM 1891 1497702 - 1497682 - R 100 -7.6 -5.79526 | AGATTTCAAAAAAAA CAGACCAC TCTTT ATGGTCTG TCAAATCCGGCTTAT SSU98_1583 1499258 - 1497714 - | superfamily II DNA/RNA helicase TERM 1892 1498832 - 1498853 + g 70 -7.3 -3.74693 | opp_overlap 1498831 TAAGGGTTTCAACAC CGTCAAGCT TGAG AGCTTTACG TTTGATCAAGTCCAA TERM 1893 1499642 - 1499687 + r 95 -7.8 -5.4182 | opp_overlap 1499647, overlap 1499644 1499647 TTCATTCGACTATAA GAAAAGAGAAACCTAGTTAT ACATGC ACAACTAGGTTTCTCTTGTA TTTTTATTTATGATT TERM 1894 1499644 - 1499685 + r 90 -10.4 -4.31946 | opp_overlap 1499647, overlap 1499642 1499647 CATTCGACTATAAGA AAAGAGAAACCTAGTTAT ACATGC ACAACTAGGTTTCTCTTG TATTTTTATTTATGA TERM 1895 1499682 - 1499647 - R 100 -15 -4.81212 | opp_overlap 1499644 1499642 1499647 TCGACTATAAGAAAA GAGAAACCTAGTTATA CATG CACAACTAGGTTTCTC TTGTATTTTTATTTA TERM 1896 1499647 - 1499682 + r 93 -12.1 -4.22352 | opp_overlap 1499647, overlap 1499644 1499642 TCGACTATAAGAAAA GAGAAACCTAGTTAT ACATGC ACAACTAGGTTTCTC TTGTATTTTTATTTA SSU98_1584 1500284 - 1499691 - | hypothetical protein TERM 1897 1500352 - 1500327 - R 100 -8.3 -5.59357 | opp_overlap 1500326 1500328, overlap 1500328 AGTATATCAAAAAAA GCAGAAAGCGG ATAG CCACTTTCTGT ACTTTTTTCCTATTT TERM 1898 1500328 - 1500351 + r 76 -9.6 -3.44212 | opp_overlap 1500327 1500328, overlap 1500326 GTATATCAAAAAAAG CAGAAAGCGG ATAG CCACTTTCTG TACTTTTTTCCTATT TERM 1899 1500351 - 1500328 - R 91 -11.8 -3.93988 | opp_overlap 1500328 1500326, overlap 1500327 GTATATCAAAAAAAG CAGAAAGCGG ATAG CCACTTTCTG TACTTTTTTCCTATT SSU98_1585 1500784 - 1500362 - | superfamily I DNA/RNA helicase SSU98_1586 1502125 - 1500836 - | leucine-rich repeat-containing protein SSU98_1587 1503411 - 1502389 - | hypothetical protein TERM 1900 1504236 - 1504222 - g 72 -7.8 -3.75144 | opp_overlap 1504222 1504221 AAGAATACTTAACAA CCGCTC TCG GAGCAG ATTATGAAAAGCAAT SSU98_1588 1503795 - 1504547 + | hypothetical protein TERM 1901 1504649 - 1504618 - T 80 -10.2 -3.60072 | opp_overlap 1504618, overlap 1504614 1504612 GAAAATAAATATGAA GCCCTCACTAGG TGTATAAT CTTAGTGAGGGC TTTGTGCTTGATGAG TERM 1902 1504618 - 1504649 + T 93 -12.4 -4.08144 | opp_overlap 1504618 1504614 1504612 GAAAATAAATATGAA GCCCTCACTAGG TGTATAAT CTTAGTGAGGGC TTTGTGCTTGATGAG SSU98_1589 1505596 - 1505066 - | ammonia permease SSU98_1590 1506438 - 1505593 - | putative pyridoxal kinase TERM 1903 1506602 - 1506581 - R 89 -5.9 -5.25699 | ATTACATAAGAAAAA CAGCAACAA CTCT TTGCTACTG TCATCCTCTTCAATG SSU98_1591 1507326 - 1506637 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase SSU98_1592 1507655 - 1507335 - | hypothetical protein SSU98_1593 1508211 - 1507666 - | NTP pyrophosphohydrolase including oxidative damage repair enzymes SSU98_1594 1509620 - 1508220 - | N-acetylglucosamine-1-phosphate uridyltransferase TERM 1904 1509719 - 1509697 - R 100 -7.8 -5.63517 | opp_overlap 1509701 TTCGTAAATAAAAAA GAAACTGG AATGAAG CCAGTTTC TCAAAAATTTCTAGT TERM 1905 1509742 - 1509727 - R 71 -4.8 -4.57569 | CCAGTTTCTCAAAAA TTTCTA GTAT TAGAAA ACAAACTACAGGTTG TERM 1906 1509771 - 1509748 - R 78 -6 -4.80453 | opp_overlap 1509769 GTATTAGAAAACAAA CTACAGGTTG ATTG CATCCTATAG AATTGTCTATTTAGG SSU98_1595 1510248 - 1509778 - | hypothetical protein SSU98_1596 1510433 - 1510245 - | hypothetical protein TERM 1907 1510300 - 1510320 + g 73 -8.4 -3.62518 | TGATCAAGTAAAGCC TCAAATCC ATAAG GGATTTGA TTTAGAAGTGTTTCG fabG 1511235 - 1510537 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1908 1511083 - 1511062 - G 93 -10.1 -4.30576 | CTGGCACCAGGAAAA GACGGGCGA TAAA TCGCCTGTC AGGTCCAGCTGTAGA SSU98_1598 1511464 - 1511228 - | hypothetical protein TERM 1909 1511409 - 1511420 + g 71 -2.2 -5.10208 | GCCCCACCCCAGCCT GTGC GAAC GTAC TTTTTCTTGGCCTTC SSU98_1599 1512345 - 1511524 - | hypothetical protein SSU98_1600 1512667 - 1512332 - | transcriptional regulator SSU98_1601 1512828 - 1512664 - | hypothetical protein TERM 1910 1513022 - 1512993 - R 100 -10.1 -5.85178 | gap 1, opp_overlap 1512999, overlap 1512997 AATATTCAAAAAAAA TCATGACCACCCGT CAA ACGGGTGGTT-TGA ACAAGGGCTATAAGC TERM 1911 1513019 - 1512997 - R 83 -12 -2.75327 | opp_overlap 1512999, overlap 1512993 TTCAAAAAAAATCAT GACCACCCGT CAA ACGGGTGGTT TGAACAAGGGCTATA TERM 1912 1512999 - 1513017 + r 100 -14.6 -3.53224 | opp_overlap 1512997 1512993 CAAAAAAAATCATGA CCACCCGT CAA ACGGGTGG TTTGAACAAGGGCTA TERM 1913 1513039 - 1513027 - R 75 -9.1 -3.61398 | GGGTGGTTTGAACAA GGGCT ATA AGCCC ACATCACCAGCCAGC TERM 1914 1513049 - 1513070 + r 91 -11.5 -3.93262 | opp_overlap 1513046 AAGCCCACATCACCA GCCAGCGCC TAAA GACGCTGGC TTTCACTTTGTTCAA TERM 1915 1513112 - 1513126 + r 73 -10 -2.54687 | overlap 1513111 TTTGACTCGTCACTA GCCTCT TAA AGAGGC ATTCGTACTACTTGC SSU98_1602 1513634 - 1513134 - | IS200 family transposase TERM 1916 1513681 - 1513699 + r 91 -10.2 -4.55295 | overlap 1513682 TGTAACCTTCGTCGC GCACCCGC ATA GCGGGTGG TTTATTTGTCACGCA TERM 1917 1513682 - 1513698 + r 100 -13.7 -3.32695 | overlap 1513681 GTAACCTTCGTCGCG CACCCGC ATA GCGGGTG GTTTATTTGTCACGC TERM 1918 1513771 - 1513756 - R 100 -9 -4.96646 | opp_overlap 1513756 TCACATAATTAAAAA CTTGGG TTCC CCCAAG TTTAGGAAATAATCT TERM 1919 1513756 - 1513771 + r 75 -9 -3.5627 | opp_overlap 1513756 TCACATAATTAAAAA CTTGGG TTCC CCCAAG TTTAGGAAATAATCT SSU98_1603 1515791 - 1513773 - | ABC transporter membrane-spanning permease - unknown substrate TERM 1920 1514184 - 1514170 - G 72 -6.4 -4.32607 | GCAAAACTGAAGAAA CTACGC ATC GCATAG GCACGGTAGGCGAGA SSU98_1604 1516449 - 1515784 - | peptide ABC transporter ATPase SSU98_1605 1517628 - 1516636 - | Signal transduction histidine kinase SSU98_1606 1518304 - 1517621 - | response regulator SSU98_1607 1518474 - 1519655 + | hypothetical protein TERM 1921 1519682 - 1519643 - T 100 -21.2 -4.36778 | opp_overlap 1519647 1519652, overlap 1519647 1519652 AAATACAACTGAAAA TAAAGAAAACTAGCTCAA CCAC TTGAGCTAGTTTTCTTTA TCAAATCTTCTTAAA TERM 1922 1519647 - 1519678 + T 100 -17.6 -3.93004 | opp_overlap 1519643 1519647 1519652, overlap 1519652 ACAACTGAAAATAAA GAAAACTAGCTCAA CCAC TTGAGCTAGTTTTC TTTATCAAATCTTCT TERM 1923 1519678 - 1519647 - T 100 -17.6 -4.73092 | opp_overlap 1519647 1519652, overlap 1519643 1519652 ACAACTGAAAATAAA GAAAACTAGCTCAA CCAC TTGAGCTAGTTTTC TTTATCAAATCTTCT TERM 1924 1519673 - 1519652 - T 100 -11.7 -5.26247 | opp_overlap 1519652 1519647, overlap 1519647 1519643 TGAAAATAAAGAAAA CTAGCTCAA CCAC TTGAGCTAG TTTTCTTTATCAAAT TERM 1925 1519652 - 1519673 + T 100 -11.7 -4.99645 | opp_overlap 1519647 1519643 1519652, overlap 1519647 TGAAAATAAAGAAAA CTAGCTCAA CCAC TTGAGCTAG TTTTCTTTATCAAAT SSU98_1608 1520794 - 1519670 - | transaminase TERM 1926 1519712 - 1519731 + g 73 -5.8 -4.44667 | overlap 1519713 AAATTGAGATAATTT TTCTAATC CTTT GATTAGAG TTTCTTGTTCACAGG TERM 1927 1520925 - 1520900 - R 74 -3.9 -5.19212 | ACTATTATTAAAAAA CAGACTTTCTC AAAC GAGACTGCCTG CTCTGCTTTTTTCCC SSU98_1609 1521702 - 1520941 - | hypothetical protein SSU98_1610 1523223 - 1521712 - | periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) TERM 1928 1522742 - 1522729 - G 70 -5.9 -4.3953 | TCCAAGTAGAATAAA GGAGC CCAG GCCCC CAGCCCCCACCAAGG SSU98_1611 1523957 - 1523223 - | ABC-type proline/glycine betaine transport system, ATPase component SSU98_1612 1524396 - 1523947 - | transcriptional regulator TERM 1929 1524540 - 1524557 + r 73 -7.1 -4.09685 | opp_overlap 1524540 CCAAAAAAAGAAAAA TAGTCAA TCAT TTGACTA TTTTGAGACATCAAC TERM 1930 1524557 - 1524540 - R 100 -7.1 -5.86609 | opp_overlap 1524540 CCAAAAAAAGAAAAA TAGTCAA TCAT TTGACTA TTTTGAGACATCAAC TERM 1931 1524702 - 1524670 - R 87 -11.5 -3.63046 | opp_overlap 1524670 1524675, overlap 1524675 ATGATAATCAGATAA CAAAACTAGCCTAGA AAA TCTAAGCTAGTTTCA TTTTATCCTTCAACT TERM 1932 1524670 - 1524702 + r 71 -4.9 -4.54821 | opp_overlap 1524670 1524675, overlap 1524675 ATGATAATCAGATAA CAAAACTAGCCTAGA AAA TCTAAGCTAGTTTCA TTTTATCCTTCAACT TERM 1933 1524697 - 1524675 - R 100 -11.4 -4.86822 | opp_overlap 1524670 1524675, overlap 1524670 AATCAGATAACAAAA CTAGCCTAGA AAA TCTAAGCTAG TTTCATTTTATCCTT TERM 1934 1524675 - 1524697 + r 86 -9.2 -4.29391 | opp_overlap 1524675 1524670, overlap 1524670 AATCAGATAACAAAA CTAGCCTAGA AAA TCTAAGCTAG TTTCATTTTATCCTT SSU98_1613 1525241 - 1524705 - | Signal recognition particle GTPase TERM 1935 1525187 - 1525171 - G 72 -6.5 -4.37886 | overlap 1525174 TTACTTGCTAGAAAA GCAGCTG CAG CAGCTCC GCCGGCTGCCCCTAA SSU98_1614 1525695 - 1525225 - | methyl-accepting chemotaxis-like domain-containing protein SSU98_1615 1526452 - 1525649 - | prolipoprotein diacylglyceryl transferase TERM 1936 1526378 - 1526368 - GR 70 -5.4 -4.4773 | TCAGACCAAGCAAAA TGCA GAT TGCA TACCAACGAATTTCT SSU98_1616 1527527 - 1526427 - | HPr kinase/phosphorylase TERM 1937 1527010 - 1527044 + gH 80 -2.9 -5.45802 | gap 1, overlap 1527008 1527014 TCTCCCGATAGACGA CTGGTTGCTGTCTTGC TTCG GCA-GATAGCAATTTG TTTTTCTTTTGCAGC TERM 1938 1527014 - 1527040 + gH 88 -6.7 -5.18409 | gap 1, overlap 1527008 1527010 CCGATAGACGACTGG TTGCTGTCTTGC TTCG GCA-GATAGCAA TTTGTTTTTCTTTTG SSU98_1617 1527576 - 1528517 + | phosphomannose isomerase TERM 1939 1528530 - 1528549 + F 81 -3.6 -5.57054 | opp_overlap 1528530 TAAGCATACAAAAAA CTTGAG CCTTTAAA CTCAAG TTTTTTTGCATTATT TERM 1940 1528549 - 1528530 - f 84 -5 -5.42131 | opp_overlap 1528530 TAAGCATACAAAAAA CTTGAGCC TTTA AACTCAAG TTTTTTTGCATTATT TERM 1941 1528823 - 1528801 - g 70 -2.7 -5.0133 | overlap 1528802 GATTTTCGTAAAAAA GTTCTCGCA TACTG TGAGAAAAC CGGCAGTATTACTGA SSU98_1618 1528771 - 1529121 + | transposase TERM 1942 1529590 - 1529546 - g 77 -3.7 -5.21709 | gap 1, opp_overlap 1529558, overlap 1529548 GCTCACATCAAAAAA CACCTC-AGAAGAGTATTGC CAAATT GCGATACTTTTCTTGAGGCA CTTTCGTCCTGCTCT SSU98_1620 1529456 - 1529617 + | IS630-Spn1, transposase Orf2 SSU98_1619 1529139 - 1529717 + | transposase SSU98_1621 1530480 - 1529719 - | hypothetical protein TERM 1943 1529884 - 1529897 + g 72 -8.1 -3.89346 | CTGCCCCCGAATTCC CTGGC CTTT GCCAG TTTGTAAAGTCAAGG TERM 1944 1530338 - 1530354 + g 86 -6.7 -5.06414 | TTAAAACTTGGCAAG GTAAAAT TCA ATTTTAC TTTTTCTTCCACAAA TERM 1945 1530545 - 1530530 - R 88 -5.4 -5.60993 | opp_overlap 1530530 TTCTCCACAAAAAAA TCAGCC CGAA GACTGA TTCTCTATTCTTTCA SSU98_1622 1530984 - 1530550 - | hypothetical protein TERM 1946 1530904 - 1530880 - G 73 -3.6 -5.00884 | gap 1 ATCCCTTGGAAAAAA GCGACCAC-CT GTTG AGCGTAATCGC CTGTTCCAGATTGCT SSU98_1623 1531969 - 1530971 - | transcriptional accessory protein TERM 1947 1531207 - 1531190 - G 70 -7.7 -3.60074 | CACAAAGGCTCCAAA GTCCACA ATAT TGCGGAC CGTACCTTGCAATTC TERM 1948 1531649 - 1531633 - G 76 -9.5 -3.53444 | CGATGTTCTCCGAAA TGGTCTT GTT AAGACCA GCAACGTGAGCCAAA TERM 1949 1531986 - 1531966 - G 95 -7.6 -5.0916 | GGCTCAATAGAAAAA GCACGTAG ATAAA CTACATGC TCTCAATAGCTAATT SSU98_1624 1532968 - 1532000 - | aldo/keto reductase family oxidoreductase TERM 1950 1532937 - 1532922 - G 84 -5.4 -5.2853 | GACCTAAAAATAAAA GACACC CGAA AGTGTC TGCTCACATTTATTG SSU98_1625 1533473 - 1532958 - | hypothetical protein SSU98_1626 1533602 - 1534039 + | hypothetical protein TERM 1951 1534063 - 1534030 - T 81 -6.9 -4.59773 | gap 1, opp_overlap 1534037, overlap 1534037 CTTTATCTTTAAAAA TACGAAATGAGGCTCC AAC GGAACCTCATTTT-TA TATATAGCTTGATTT TERM 1952 1534057 - 1534037 - T 93 -11.9 -4.13748 | opp_overlap 1534037, overlap 1534030 TTTAAAAATACGAAA TGAGGCTCC AAC GGAACCTCA TTTTTATATATAGCT TERM 1953 1534037 - 1534057 + T 100 -9.7 -5.04597 | opp_overlap 1534030 1534037 TTTAAAAATACGAAA TGAGGCTCC AAC GGAACCTCA TTTTTATATATAGCT SSU98_1627 1535027 - 1534086 - | hypothetical protein SSU98_1628 1535917 - 1535057 - | methionine aminopeptidase SSU98_1629 1536486 - 1535914 - | acetyltransferase TERM 1954 1536522 - 1536498 - R 100 -14.3 -3.07443 | opp_overlap 1536496 TCATAGTGTACCCAA GGGGCTGAGAA TTA CTCCCAGCCCC AGATTGTTTCGTTTT SSU98_1630 1537853 - 1536582 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1955 1537956 - 1537933 - R 90 -11 -4.23054 | opp_overlap 1537929 1537933 ATATAGCATGCAAAA GGACCGAGCC AATG AGCTCAGTCC TTCATATTTATATAC TERM 1956 1537933 - 1537956 + r 72 -8.1 -3.52522 | opp_overlap 1537933, overlap 1537929 ATATAGCATGCAAAA GGACCGAGC CAATGA GCTCAGTCC TTCATATTTATATAC SSU98_1631 1538594 - 1537992 - | putative NADPH-quinone reductase (modulator of drug activity B) SSU98_1632 1539828 - 1538638 - | S-adenosylmethionine synthetase TERM 1957 1539891 - 1539911 + r 95 -12.7 -3.53012 | opp_overlap 1539891 1539894, overlap 1539894 TACTAAGGTTACAAA GAACTAGTC AAA GACTAGTTC TTTGCGAAAGACAAC TERM 1958 1539911 - 1539891 - R 95 -12.7 -3.93236 | opp_overlap 1539891 1539894, overlap 1539894 TACTAAGGTTACAAA GAACTAGTC AAA GACTAGTTC TTTGCGAAAGACAAC TERM 1959 1539908 - 1539894 - R 81 -8.6 -4.08948 | opp_overlap 1539894 1539891, overlap 1539891 TAAGGTTACAAAGAA CTAGTC AAA GACTAG TTCTTTGCGAAAGAC TERM 1960 1539894 - 1539908 + r 80 -8.6 -3.90744 | opp_overlap 1539891 1539894, overlap 1539891 TAAGGTTACAAAGAA CTAGTC AAA GACTAG TTCTTTGCGAAAGAC SSU98_1633 1540712 - 1540227 - | deoxycytidylate deaminase SSU98_1634 1541450 - 1540713 - | hypothetical protein SSU98_1635 1542486 - 1541452 - | cellulase M-like protein TERM 1961 1542012 - 1541998 - G 75 -8.6 -3.80573 | overlap 1542003 GGTACGAGGATCAAA GGAGAT AAA ATCTCC GACTTCAATACCTAA TERM 1962 1542515 - 1542529 + H 77 -2.8 -5.59357 | opp_overlap 1542515 TTTAAAACTATTATA TCACGT TTT AGGTGA TTTTTTTGCTATAAT TERM 1963 1543352 - 1543328 - g 100 -9.4 -5.38054 | opp_overlap 1543327 CTTTACAAAGAAAAA TCACTTGTCG TTGGC CAACAAGTGA GCTTTGTAGAAAATC TERM 1964 1543466 - 1543449 - g 73 -3.5 -4.99134 | gap 1, opp_overlap 1543458, overlap 1543450 1543452 ACGGCAAAGCAAAAA TTATCTCC AGC GGAGA-AA TCAGCCTTACTTCTT SSU98_1636 1542551 - 1543507 + | biotin--protein ligase SSU98_1637 1543661 - 1543473 - | ABC-type multidrug transport system, ATPase and permease component TERM 1965 1543682 - 1543699 + r 80 -6.3 -5.06585 | opp_overlap 1543682, overlap 1543676 AGATTATACCAAAAA TTCAGTC AACT GGCTGAA TTTTTATATGCTTTC TERM 1966 1543773 - 1543741 - R 100 -13.7 -3.53444 | opp_overlap 1543748 1543749 1543751, overlap 1543744 1543749 CGATTCTTTTCTAAA CAAGAAAACACCAAT CTA ATTGGTGCTTTCTTA AGGAGATATGAAAAA TERM 1967 1543770 - 1543744 - R 100 -13.2 -3.90744 | opp_overlap 1543748 1543749 1543751, overlap 1543741 1543749 TTCTTTTCTAAACAA GAAAACACCAAT CTA ATTGGTGCTTTC TTAAGGAGATATGAA TERM 1968 1543765 - 1543749 - R 100 -9.5 -5.00196 | opp_overlap 1543749 1543748 1543751, overlap 1543744 1543741 TTCTAAACAAGAAAA CACCAAT CTA ATTGGTG CTTTCTTAAGGAGAT TERM 1969 1543749 - 1543765 + r 74 -9.5 -3.08991 | opp_overlap 1543744 1543741 1543749, overlap 1543748 1543751 TTCTAAACAAGAAAA CACCAAT CTA ATTGGTG CTTTCTTAAGGAGAT TERM 1970 1543834 - 1543849 + r 74 -7.6 -3.85857 | overlap 1543832 TATCAAAACTATTCA TCAGTC TTAG GACTGA TATTTTCTAATCATT SSU98_1638 1545523 - 1543856 - | DNA polymerase III subunits gamma and tau TERM 1971 1544981 - 1544999 + g 72 -9.6 -3.18452 | CAAGTGCTCCTGAAT GTCCGTCA CCT TGATGGAC TTAAATTCAAATCGT SSU98_1639 1546020 - 1545523 - | GAF domain-containing protein TERM 1972 1545651 - 1545667 + g 86 -7.9 -4.62471 | opp_overlap 1545651 AATCCAAGTCCAAAA CGCCCAG CAA CTGGTCG TTTTTCACCATTGGC TERM 1973 1545667 - 1545651 - G 76 -7.9 -4.20354 | opp_overlap 1545651 AATCCAAGTCCAAAA CGCCCAG CAA CTGGTCG TTTTTCACCATTGGC TERM 1974 1546091 - 1546070 - R 71 -7.3 -3.92075 | opp_overlap 1546074 AGTCCGAGCGATAAA GAAAAAGGC TTGC GCCTATTTC CACATCCAGTACATA SSU98_1640 1546225 - 1546085 - | hypothetical protein TERM 1975 1546440 - 1546421 - R 100 -12.2 -4.96646 | opp_overlap 1546421 1546416 GGACACAAGGAAAAA CGATTCGG AAAT CCGAATCG TTACATTTCTGCCAG TERM 1976 1546421 - 1546440 + r 89 -12.2 -3.32997 | opp_overlap 1546421, overlap 1546416 GGACACAAGGAAAAA CGATTCGG AAAT CCGAATCG TTACATTTCTGCCAG SSU98_1641 1546938 - 1546441 - | transcriptional repressor PadR SSU98_1642 1547616 - 1547053 - | uridine kinase SSU98_1643 1547693 - 1548373 + | dehydrogenase and related proteins SSU98_1644 1548521 - 1548679 + | dehydrogenase and related proteins TERM 1977 1549283 - 1549269 - g 72 -7.2 -3.9712 | opp_overlap 1549268, overlap 1549280 TTATCTGAGCAGAAA TTGGAT AAT ATCCAA CATTGCTATATGATG SSU98_1645 1548669 - 1549751 + | superfamily II DNA/RNA helicase TERM 1978 1549811 - 1549763 - T 93 -12.9 -3.31932 | gap 1, opp_overlap 1549763 1549768, overlap 1549768 ATAATGAACAATATA CAAAAGGCTTAGAACCAGTGTT TCTACT AACA-TGATTCTAAGCCTTTTA TCATTCTTACTGGGC TERM 1979 1549768 - 1549806 + T 88 -8.4 -4.61747 | gap 1, opp_overlap 1549763 1549768, overlap 1549763 GAACAATATACAAAA GGCTTAGAACCAGTGTT TCTACT AACA-TGATTCTAAGCC TTTTATCATTCTTAC TERM 1980 1549806 - 1549768 - T 100 -10.6 -4.73633 | gap 1, opp_overlap 1549768 1549763, overlap 1549763 GAACAATATACAAAA GGCTTAGAACCAGTGTT TCTACT AACA-TGATTCTAAGCC TTTTATCATTCTTAC SSU98_1646 1550024 - 1549818 - | xylanase/chitin deacetylase TERM 1981 1549996 - 1550009 + g 75 -3.1 -5.18866 | AGGATAATACTTCCT GGACA AGTC TGTTC TTTTATTTCTTTCAA SSU98_1647 1551232 - 1550021 - | xylanase/chitin deacetylase TERM 1982 1551496 - 1551481 - R 88 -5.4 -5.45802 | opp_overlap 1551476 1551481 TTTTGAAAAGAAAAA GACTGC CTAG GCAATC TTTTCTAAATTAATC SSU98_1648 1551889 - 1551506 - | lactoylglutathione lyase and related lyases TERM 1983 1551988 - 1551959 - R 86 -10.1 -4.23758 | gap 1, opp_overlap 1551965 ATCCGATATTCAAAA TCATGACCACCCGT CAA ACGGGTGGTT-TGA ACAAGGGCTATAAGC TERM 1984 1551965 - 1551983 + r 100 -14.6 -3.53224 | opp_overlap 1551959 TATTCAAAATCATGA CCACCCGT CAA ACGGGTGG TTTGAACAAGGGCTA TERM 1985 1552005 - 1551993 - R 75 -9.1 -3.61398 | GGGTGGTTTGAACAA GGGCT ATA AGCCC ACATCACCAGCCAGC TERM 1986 1552015 - 1552036 + r 91 -11.5 -3.93262 | opp_overlap 1552012 AAGCCCACATCACCA GCCAGCGCC TAAA GACGCTGGC TTTCACTTTGTTCAA TERM 1987 1552078 - 1552092 + r 73 -10 -2.54687 | overlap 1552077 TTTGACTCGTCACTA GCCTCT TAA AGAGGC ATTCGTACTACTTGC TERM 1988 1552197 - 1552227 + r 83 -9.2 -3.97694 | opp_overlap 1552205, overlap 1552201 1552205 TTAAGCTGAAGCTCG TGAAGAAATCATCC ACT GGATAATTTCTTTA TTCTTGTATATATTT TERM 1989 1552201 - 1552223 + r 84 -7.8 -4.55997 | opp_overlap 1552205, overlap 1552197 1552205 GCTGAAGCTCGTGAA GAAATCATCC ACT GGATAATTTC TTTATTCTTGTATAT SSU98_1649 1552578 - 1552225 - | IS200 family transposase TERM 1990 1552696 - 1552714 + r 91 -10.2 -4.55295 | overlap 1552697 TGTAACCTTCGTCGC GCACCCGC ATA GCGGGTGG TTTATTTGTCACGCA TERM 1991 1552697 - 1552713 + r 100 -13.7 -3.32695 | overlap 1552696 GTAACCTTCGTCGCG CACCCGC ATA GCGGGTG GTTTATTTGTCACGC TERM 1992 1552789 - 1552772 - R 100 -11.3 -5.35354 | opp_overlap 1552771 CACATAACTAAAAAA GCCTGAG CGAA CTCAGGC CTTAAATGAATTATG SSU98_1650 1553492 - 1552800 - | phosphoglycerate mutase 1 TERM 1993 1553188 - 1553198 + g 71 -6.8 -4.15222 | TCACCAAATTCAGCA GCTG CTT CAGC TTTGTTCAAGCCAGT TERM 1994 1553752 - 1553764 + G 73 -9.1 -3.5627 | TGTCTGCCTATCGTT CTGCC ATC GGCAG TTTCGGAGGTAGTCT SSU98_1651 1553718 - 1554902 + | Acetyl-CoA acetyltransferase TERM 1995 1555615 - 1555589 - g 78 -2.4 -5.52023 | gap 1, overlap 1555592 ACTATCAACAAAAAA CAGGCAAAACC CTCAAC GATTTTGC-TG CCATGTGCTTACATA TERM 1996 1555816 - 1555830 + G 74 -6.4 -4.45485 | opp_overlap 1555816 AGAGCGTTAGAGACA GGGGAT CAA ATCCTC TTTTATAGCTATGGT SSU98_1652 1554886 - 1556085 + | 3-hydroxy-3-methylglutaryl CoA synthase TERM 1997 1556108 - 1556088 - f 78 -6.1 -4.88918 | opp_overlap 1556097, overlap 1556083 1556095 1556096 1556097 CTATCGTAAATAAAA GCCAAAACG GCG CCCTTTGGC TCTCACCAAGGGGCG TERM 1998 1556126 - 1556095 - f 76 -6.4 -4.49716 | opp_overlap 1556097, overlap 1556088 1556083 1556096 1556097 AAATAAAAGCCAAAA CGGCGCCCTTTGGC TCTC ACCAAGGGGCGCTT TCCTATAGAAAGAGG TERM 1999 1556125 - 1556096 - f 77 -9.9 -3.27389 | opp_overlap 1556097, overlap 1556088 1556083 1556095 1556097 AATAAAAGCCAAAAC GGCGCCCTTTGGC TCTC ACCAAGGGGCGCT TTCCTATAGAAAGAG TERM 2000 1556124 - 1556097 - f 87 -13.4 -2.54807 | opp_overlap 1556097, overlap 1556088 1556083 1556096 1556095 ATAAAAGCCAAAACG GCGCCCTTTGGC TCTC ACCAAGGGGCGC TTTCCTATAGAAAGA TERM 2001 1556097 - 1556124 + F 100 -14.9 -3.83026 | opp_overlap 1556088 1556083 1556097 1556096 1556095 ATAAAAGCCAAAACG GCGCCCTTTGG CTCTCA CCAAGGGGCGC TTTCCTATAGAAAGA SSU98_1653 1556147 - 1557427 + | hydroxymethylglutaryl-CoA reductase TERM 2002 1557511 - 1557460 - f 90 -8.8 -4.60317 | opp_overlap 1557466 1557470, overlap 1557464 1557470 ACAGAATAATGAAAA CGAACATAAAGCCCTCACTAGG TGTATAAT CTTAGTGAGGGCTTTGTGGTTG ACGAGTTACTGATGT TERM 2003 1557507 - 1557464 - f 95 -12.6 -3.78229 | opp_overlap 1557466 1557470, overlap 1557460 1557470 AATAATGAAAACGAA CATAAAGCCCTCACTAGG TGTATAAT CTTAGTGAGGGCTTTGTG GTTGACGAGTTACTG TERM 2004 1557466 - 1557505 + F 93 -13.8 -2.72379 | opp_overlap 1557464 1557460 1557470, overlap 1557470 TAATGAAAACGAACA TAAAGCCCTCACTAGG TGTATAAT CTTAGTGAGGGCTTTG TGGTTGACGAGTTAC TERM 2005 1557470 - 1557501 + F 93 -12.4 -4.05446 | opp_overlap 1557464 1557460 1557470, overlap 1557466 GAAAACGAACATAAA GCCCTCACTAGG TGTATAAT CTTAGTGAGGGC TTTGTGGTTGACGAG TERM 2006 1557501 - 1557470 - f 86 -10.2 -4.3341 | opp_overlap 1557470 1557466, overlap 1557464 1557460 GAAAACGAACATAAA GCCCTCACTAGG TGTATAAT CTTAGTGAGGGC TTTGTGGTTGACGAG TERM 2007 1558718 - 1558708 - g 75 -5.4 -4.82901 | CGTGGCTCACAAAAA GCAA CCA TTGC ACTTGCGCATCAACT SSU98_1654 1557655 - 1558821 + | transposase TERM 2008 1558826 - 1558802 - T 100 -6.5 -6.26417 | TAGCACAAAAAAAAA GACTACTAG GGACGAG CTAGTAGCC TAACATAAAAAATTT SSU98_1655 1559523 - 1559056 - | histone acetyltransferase HPA2-like acetyltransferase TERM 2009 1559666 - 1559679 + H 80 -2.3 -5.64304 | overlap 1559663 1559655 CTCCTAAAAAATCAG CTGGC CAAG GCTGG TTTTTTGTTGTCTTA TERM 2010 1559831 - 1559869 + H 78 -3.9 -5.40464 | gap 1, opp_overlap 1559820 1559843, overlap 1559853 1559863 1559864 1559867 AACATACTAAGATTA GTAGTGAGGA-AATCTCC GACG GGAGAAAGTACTCACTAC TTTTTCTTTATGATA TERM 2011 1560761 - 1560741 - g 77 -6.2 -4.63218 | gap 1, opp_overlap 1560741 GTGCCGTCAAGAAAA CCTC-TCCA ATAC TGGAAGAGG TCCGTTACTATACAA TERM 2012 1561177 - 1561137 - g 87 -6.1 -5.10877 | ATAAGAAACGAAAAA GACAATCGCAAACGACTTC AAC GAAGCTGCACACGATTGCC TCCATACATCGTTTC SSU98_1656 1559918 - 1561261 + | transposase TERM 2013 1561483 - 1561441 - T 79 -7.1 -4.45577 | gap 1, opp_overlap 1561444, overlap 1561444 ACAAATGGTAGAAAA GAAGCCCGTCGTA-CAAGTT AGTA AGCTTGATATGACGGGCTTT TTGATGCTTAGCCTC TERM 2014 1561480 - 1561444 - T 83 -8.8 -4.32669 | gap 1, opp_overlap 1561444, overlap 1561441 AATGGTAGAAAAGAA GCCCGTCGTA-CAAGTT AGTA AGCTTGATATGACGGGC TTTTTGATGCTTAGC TERM 2015 1561444 - 1561480 + T 100 -13.2 -4.81083 | gap 1, opp_overlap 1561444 1561441 AATGGTAGAAAAGAA GCCCGTCGTA-CAAGTT AGTA AGCTTGATATGACGGGC TTTTTGATGCTTAGC TERM 2016 1561523 - 1561550 + T 86 -10.1 -4.11773 | opp_overlap 1561519 1561528, overlap 1561528 TTTTTAAGCGAGGGA TAAAACAGTCT ATCCCC AGACTGTTTTA TTTTACAGCGTCTTT TERM 2017 1561528 - 1561545 + T 81 -5.6 -5.07652 | opp_overlap 1561519 1561528, overlap 1561523 AAGCGAGGGATAAAA CAGTCT ATCCCC AGACTG TTTTATTTTACAGCG TERM 2018 1561545 - 1561528 - T 73 -6.3 -4.43501 | opp_overlap 1561528 1561523, overlap 1561519 AAGCGAGGGATAAAA CAGTCTA TCCC CAGACTG TTTTATTTTACAGCG SSU98_1657 1561823 - 1561548 - | nucleoid DNA-binding protein TERM 2019 1561780 - 1561793 + g 71 -6.7 -4.14243 | opp_overlap 1561780 TTTTTAGTCAATGAA GTTGC TTCT GCAAC TTTTGCAATCAAATC SSU98_1658 1562205 - 1561912 - | hypothetical protein SSU98_1659 1563346 - 1562555 - | lysophospholipase L1 and related esterases SSU98_1660 1564142 - 1563309 - | hypothetical protein TERM 2020 1564241 - 1564226 - R 78 -5.4 -4.96646 | opp_overlap 1564226, overlap 1564219 1564220 GGACATAAGCAAAAA GGCTAG TCGC CTAACC TTTTTCTACTAATTC TERM 2021 1564226 - 1564241 + r 70 -3.2 -4.94902 | opp_overlap 1564226 1564219 1564220 GGACATAAGCAAAAA GGCTAG TCGC CTAACC TTTTTCTACTAATTC SSU98_1661 1565906 - 1564236 - | ATPase involved in DNA repair TERM 2022 1564803 - 1564778 - G 71 -7 -4.17762 | gap 1, opp_overlap 1564797 TATCTTCTAAAACAA CAGCCAATTCA TGGCG TGA-TTGGCTG AGCTGACCTGCTCGT TERM 2023 1565496 - 1565518 + g 71 -9.2 -2.96042 | opp_overlap 1565493 GGATTTCATCAATTC TTCCTGGTCA TGT TGACCATGAA TATCTACTAAATATT SSU98_1662 1566343 - 1565900 - | arginine repressor SSU98_1663 1567139 - 1566318 - | rRNA methylase TERM 2024 1566704 - 1566691 - GR 73 -6.7 -4.21275 | TCAATGGACGCAAAA CTTGG TTGA CCAAG TTCGAAATCTCCCAA SSU98_1664 1568001 - 1567132 - | geranylgeranyl pyrophosphate synthase TERM 2025 1567611 - 1567596 - G 73 -9 -3.54129 | CAGATGCCTGGGAAA GCTCTC TCAC GAGAGC AAGGATGGTCTCAGC SSU98_1665 1568216 - 1568001 - | exodeoxyribonuclease VII small subunit TERM 2026 1568037 - 1568052 + gr 78 -7.6 -4.22338 | GCCATCCGCCTGCAT GACCTT GACC AAGGTC TTTTCAGCTTCTGCT xseA 1569540 - 1568191 - | exodeoxyribonuclease VII large subunit TERM 2027 1569279 - 1569266 - GH 70 -6.7 -4.01089 | ATGACAATAGAATAA GAACC ATTT GGTTC ATAGAGCTGAATGCG SSU98_1667 1569675 - 1570610 + | metalloprotease SSU98_1668 1570693 - 1570577 - | hypothetical protein TERM 2028 1570676 - 1570634 - G 100 -16.7 -3.14211 | opp_overlap 1570634 1570638 1570642, overlap 1570638 1570642 AGCCTCTCGTAGCAA TAAAGAAACTCTTGCAACA TACAC TTTTGCAAGAGTTTCTTTA TAATATACAACTGAC TERM 2029 1570634 - 1570676 + g 100 -16.7 -2.62983 | opp_overlap 1570634 1570638 1570642, overlap 1570638 1570642 AGCCTCTCGTAGCAA TAAAGAAACTCTTGCAACA TACAC TTTTGCAAGAGTTTCTTTA TAATATACAACTGAC TERM 2030 1570638 - 1570672 + g 100 -13.1 -4.0162 | opp_overlap 1570638 1570634 1570642, overlap 1570634 1570642 TCTCGTAGCAATAAA GAAACTCTTGCAACA TACAC TTTTGCAAGAGTTTC TTTATAATATACAAC TERM 2031 1570672 - 1570638 - G 100 -13.1 -4.24342 | opp_overlap 1570634 1570638 1570642, overlap 1570634 1570642 TCTCGTAGCAATAAA GAAACTCTTGCAACA TACAC TTTTGCAAGAGTTTC TTTATAATATACAAC TERM 2032 1570668 - 1570642 - G 86 -8.1 -4.70887 | opp_overlap 1570638 1570634 1570642, overlap 1570638 1570634 GTAGCAATAAAGAAA CTCTTGCAACA TACAC TTTTGCAAGAG TTTCTTTATAATATA TERM 2033 1570642 - 1570668 + g 86 -8.1 -4.60949 | opp_overlap 1570642 1570638 1570634, overlap 1570638 1570634 GTAGCAATAAAGAAA CTCTTGCAACA TACAC TTTTGCAAGAG TTTCTTTATAATATA SSU98_1669 1571409 - 1570819 - | hypothetical protein TERM 2034 1571479 - 1571534 + r 78 -6.4 -4.65819 | opp_overlap 1571484 1571489, overlap 1571481 1571484 TTTTCCATTTGAGAC TACAATAAAAGAGACCTGTTTTCA AAAATGGA TGAAATCATGTCTCTTTTATAGTC TTTTAGTTTACTTTT TERM 2035 1571481 - 1571532 + r 80 -9 -3.90906 | opp_overlap 1571484 1571489, overlap 1571479 1571484 TTCCATTTGAGACTA CAATAAAAGAGACCTGTTTTCA AAAATGGA TGAAATCATGTCTCTTTTATAG TCTTTTAGTTTACTT TERM 2036 1571529 - 1571484 - R 78 -9.3 -3.47078 | opp_overlap 1571484 1571481 1571479, overlap 1571489 CATTTGAGACTACAA TAAAAGAGACCTGTTTTCA AAAATGGA TGAAATCATGTCTCTTTTA TAGTCTTTTAGTTTA TERM 2037 1571484 - 1571529 + r 74 -9.3 -3.00115 | opp_overlap 1571484 1571489, overlap 1571481 1571479 CATTTGAGACTACAA TAAAAGAGACCTGTTTTCA AAAATGGA TGAAATCATGTCTCTTTTA TAGTCTTTTAGTTTA TERM 2038 1571524 - 1571489 - R 74 -4.8 -4.82819 | opp_overlap 1571484 1571481 1571479, overlap 1571484 GAGACTACAATAAAA GAGACCTGTTTTCA AAAATGGA TGAAATCATGTCTC TTTTATAGTCTTTTA TERM 2039 1571694 - 1571708 + r 70 -8.6 -3.08996 | opp_overlap 1571694 TGAAGTTGGAAATAA GGAAAC GGA GTTTCC TCTTACGTCGAAGTA TERM 2040 1571708 - 1571694 - R 80 -8.6 -3.94 | opp_overlap 1571694 TGAAGTTGGAAATAA GGAAAC GGA GTTTCC TCTTACGTCGAAGTA SSU98_1670 1573146 - 1571758 - | two-component sensor TERM 2041 1571846 - 1571859 + g 77 -4.5 -5.02201 | overlap 1571849 GAAGCATAAAAAGTG TACGG AAAG CCGTG TTTTTCTAATATTTT TERM 2042 1572296 - 1572312 + g 91 -6.6 -5.51402 | AACTCAGATTGTTCC TGCAAG ATTTC CTTGCA TTTTTTTAAATATGT TERM 2043 1572449 - 1572462 + g 70 -8.1 -3.72395 | GACTTCTCCTTCTCA CGTGC CATA GCACG TTCATTTTCCGTTCT SSU98_1671 1573312 - 1573148 - | two-component regulator SSU98_1672 1573799 - 1573287 - | two-component regulator SSU98_1673 1574031 - 1574732 + | hypothetical protein TERM 2044 1574806 - 1574825 + T 100 -13.6 -4.84146 | CCCTACTAGTCATGA CCACCCGT GAAA ACGGGTGG TTTATTTTGTGTAAT TERM 2045 1574863 - 1574901 + T 83 -7 -4.84914 | gap 1, opp_overlap 1574863, overlap 1574858 AAGAGTGCCAAAAAA CGCATAAAATC-GTGTT GCTAAG AACGTTGATTTTATGCG TTTTATTATATGACT SSU98_1674 1578046 - 1575197 - | methyl-accepting chemotaxis protein TERM 2046 1575574 - 1575586 + g 84 -6.3 -4.99035 | GGGTATCCATTACTT TTGGA ATA TCCAA TTTTTGTGTACCTGC TERM 2047 1578412 - 1578383 - R 85 -9.3 -4.17048 | opp_overlap 1578381 1578380 1578379 CTTTTGGGAAAAGAA TGGGCACCTTGTG TATT CATAAGGTGCCTA AGTCCTTCTGTTAAC SSU98_1675 1580983 - 1578806 - | hypothetical protein TERM 2048 1581493 - 1581480 - R 100 -8.1 -5.88565 | CTCACAATAAAAAAA GCACC CGAA GGTGC TAGGTAAGATCATCC SSU98_1676 1582479 - 1581544 - | putative manganese-dependent inorganic pyrophosphatase SSU98_1677 1582696 - 1584315 + | oligoendopeptidase F TERM 2049 1584353 - 1584326 - T 100 -12.2 -5.32599 | opp_overlap 1584326 TATAAAACACAAAAA TCTGAATGAATC AAAT GACTCATTCAGA TTTTTTGATTATATG TERM 2050 1584326 - 1584353 + T 100 -10 -5.35354 | opp_overlap 1584326 TATAAAACACAAAAA TCTGAATGAATC AAAT GACTCATTCAGA TTTTTTGATTATATG SSU98_1678 1585216 - 1584425 - | pyruvate-formate lyase activating enzyme TERM 2051 1584507 - 1584521 + g 70 -9.2 -2.80935 | overlap 1584498 ACTCGAGCCTTCGTT GGGGGC TTG GTCCCC TCTAGTGGATAGGGT TERM 2052 1585348 - 1585318 - R 81 -4.1 -5.4505 | gap 1, opp_overlap 1585324 1585325 1585327, overlap 1585325 TTCCGCAAGAAAAAA GCTAAAAGACTAGG TTGC CCTAGTC-CTTATC GGTTTCTTCTTTCTC TERM 2053 1585342 - 1585325 - R 91 -9.9 -4.55016 | opp_overlap 1585324 1585325 1585327, overlap 1585318 AGAAAAAAGCTAAAA GACTAGG TTGC CCTAGTC CTTATCGGTTTCTTC TERM 2054 1585325 - 1585342 + r 74 -9.9 -2.70617 | opp_overlap 1585325 1585318, overlap 1585324 1585327 AGAAAAAAGCTAAAA GACTAGG TTGC CCTAGTC CTTATCGGTTTCTTC SSU98_1679 1586674 - 1585337 - | hemolysin-like protein TERM 2055 1586259 - 1586239 - G 86 -9.1 -4.4078 | TTTTTCCAAGGAAAA TAATCACTG GTG CAGTGACTA CTGCCAGATTTTCCT SSU98_1680 1586807 - 1587586 + | ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA TERM 2056 1587620 - 1587591 - T 100 -9.4 -5.34555 | opp_overlap 1587595, overlap 1587595 CGATATTATAAAAAA CAAATCCAGCTC TAGTTC GAGCTGGATTTT AATCGTTCCACCATG TERM 2057 1587616 - 1587595 - T 100 -10.2 -5.1471 | opp_overlap 1587595, overlap 1587591 ATTATAAAAAACAAA TCCAGCTC TAGTTC GAGCTGGA TTTTAATCGTTCCAC TERM 2058 1587595 - 1587616 + T 86 -10.2 -4.3534 | opp_overlap 1587595 1587591 ATTATAAAAAACAAA TCCAGCTC TAGTTC GAGCTGGA TTTTAATCGTTCCAC SSU98_1681 1588156 - 1587602 - | SAM-dependent methyltransferase SSU98_1682 1588278 - 1588922 + | Type II secretory pathway, prepilin signal peptidase PulO and related peptidases TERM 2059 1588924 - 1588938 + F 91 -5.7 -5.89921 | opp_overlap 1588924 TTCTGTGCACCTAAA TCGAG TTTTT CTCGA TTTTTTTGTTATAAT SSU98_1683 1589030 - 1590490 + | nicotinate phosphoribosyltransferase nadE 1590503 - 1591327 + | NAD synthetase TERM 2060 1591372 - 1591402 + T 80 -11.2 -3.15354 | opp_overlap 1591381 1591382, overlap 1591370 1591381 1591401 TTGACTTGATTTGAT GACTGAAAAGCTCC TGT GGAGGTTTTCAGCC TGTTCCCTTGAAATA TERM 2061 1591486 - 1591500 + T 75 -7.2 -4.25104 | ATTTCCTAGCTTCAA CTATCT CCC AGATAG TTTTGATGCGAAACA TERM 2062 1591529 - 1591567 + T 79 -10.4 -3.25595 | overlap 1591527 1591526 1591530 CATGTTCGCTATATT TCCAACCTTCAACTATCT CCC AGATAGTTGAAGCTAGGC TACTTTTGATTTTCA TERM 2063 1591530 - 1591566 + T 91 -13.9 -2.54272 | overlap 1591529 1591527 1591526 ATGTTCGCTATATTT CCAACCTTCAACTATCT CCC AGATAGTTGAAGCTAGG CTACTTTTGATTTTC TERM 2064 1591602 - 1591626 + T 100 -8.5 -5.55001 | opp_overlap 1591602 1591599, overlap 1591603 ATAATAAAAAATGGA GCCCTGACAGT TGA ACCGTCAGGGG TTTTGTTTTTTATTA TERM 2065 1591626 - 1591602 - T 78 -10.7 -3.00342 | opp_overlap 1591602 1591603, overlap 1591599 ATAATAAAAAATGGA GCCCTGACAGT TGA ACCGTCAGGGG TTTTGTTTTTTATTA TERM 2066 1591603 - 1591625 + T 93 -12 -3.8934 | opp_overlap 1591602 1591599, overlap 1591602 TAATAAAAAATGGAG CCCTGACAGT TGA ACCGTCAGGG GTTTTGTTTTTTATT TERM 2067 1591696 - 1591666 - T 100 -19.8 -5.33848 | ACCATAATGAAAAAA GCCCACGCAGGAAA AAA TATCCTGCGTGGGC GTCAATGGACACGGT TERM 2068 1592094 - 1592076 - T 76 -3.1 -5.30199 | overlap 1592070 AAAAACTAACAAAAA GCCACTC TGCTT AAGTGAC TTTCTAAAAAACTGT TERM 2069 1592115 - 1592140 + T 76 -10.3 -2.59921 | overlap 1592114 AAAAAACTGTACTCA CGAGGCTGGGC TCAA GCCCAGCACCG CTTCTCAAAGTTAGT TERM 2070 1592223 - 1592209 - T 78 -8.6 -3.65902 | opp_overlap 1592209 TCCAGTGGAGTGAAA CAGTTC GGG GAACTG TTTCAGCCCGATCCT TERM 2071 1592209 - 1592223 + T 75 -8.6 -3.5393 | opp_overlap 1592209 TCCAGTGGAGTGAAA CAGTTC GGG GAACTG TTTCAGCCCGATCCT TERM 2072 1592290 - 1592274 - T 78 -9.5 -3.49668 | opp_overlap 1592268 AAAGGTTGGAGATAA GATTTGC GAA GCAAATC TCAGCAATTCATGTT TERM 2073 1592337 - 1592351 + T 76 -10 -2.9914 | ACCTCTACGACTGAT GCGAAC TTT GTTCGC TATATCTCCAGCCTC SSU98_1685 1593150 - 1592623 - | glycopeptide antibiotics resistance protein TERM 2074 1593095 - 1593054 - G 95 -9.5 -4.49556 | overlap 1593060 1593063 GTGGTAGGAAACAAA GTAAAACAATAGCCAGAGC ATAG GCTCCAGCTAAGGTCTTAC AAATCTGTCTTCCCA TERM 2075 1593089 - 1593060 - G 71 -4.9 -4.72863 | overlap 1593054 1593063 GGAAACAAAGTAAAA CAATAGCCAGAGC ATAG GCTCCAGCTAAGG TCTTACAAATCTGTC TERM 2076 1593086 - 1593063 - G 95 -9.6 -4.42237 | overlap 1593060 1593054 AACAAAGTAAAACAA TAGCCAGAGC ATAG GCTCCAGCTA AGGTCTTACAAATCT SSU98_1686 1594259 - 1593147 - | Fe-S-cluster redox protein SSU98_1687 1594909 - 1594268 - | hypothetical protein TERM 2077 1594885 - 1594896 + g 75 -3 -5.14819 | opp_overlap 1594885 TATTATAGTTATACA TTTC AGGT GAAA TTTCTTTTTTCATTT TERM 2078 1595106 - 1595090 - R 83 -5.8 -5.14563 | opp_overlap 1595090 TTCTCTAGCAAAAAA GGACGA TTTAC TCGCCC TTTGTTTTCTTCAAA SSU98_1688 1596182 - 1595097 - | protease TERM 2079 1595783 - 1595799 + gr 78 -10.9 -2.73735 | TGACTTCTTTTCCTG CCAAGGT CAA ACCTTGG TACTTCGCCATATTT coaD 1596621 - 1596133 - | phosphopantetheine adenylyltransferase SSU98_1690 1597150 - 1596611 - | hypothetical protein SSU98_1691 1598180 - 1597458 - | extracellular serine protease SSU98_1692 1598626 - 1598237 - | rhodanese-related sulfurtransferase SSU98_1693 1598898 - 1598623 - | hypothetical protein TERM 2080 1599035 - 1599021 - R 87 -11.4 -3.6106 | opp_overlap 1599021 GGGAACAGGCTGAAA GGCTCC ACT GGAGCC TTTTACTCATCAAAT TERM 2081 1599021 - 1599035 + r 91 -11.4 -4.30844 | opp_overlap 1599021 GGGAACAGGCTGAAA GGCTCC ACT GGAGCC TTTTACTCATCAAAT TERM 2082 1599140 - 1599121 - R 100 -8.6 -4.82901 | opp_overlap 1599121 1599123 TCCGGTCTATAAAAA GATTGGAC AAAT GCCCAATC TCATTCGTTTATACT SSU98_1694 1599751 - 1599149 - | response regulator SSU98_1695 1600842 - 1599748 - | putative sensor histidine kinase SSU98_1696 1601582 - 1600851 - | hypothetical protein TERM 2083 1601397 - 1601387 - G 79 -8.2 -4.24002 | TGGGAAAGGTGAAAA GGGC AAA GCCC GACATGGAAAAACCT SSU98_1697 1602457 - 1601579 - | putative ATPase TERM 2084 1602808 - 1602791 - R 88 -4.8 -5.54894 | opp_overlap 1602791 AATGTAGCAAAAAAA GAGTCC TACTGT GGACCC TTCATCTATTTACAA SSU98_1698 1603120 - 1602818 - | Dpr SSU98_1699 1603335 - 1603108 - | Dpr TERM 2085 1603562 - 1603552 - g 78 -4 -5.19328 | ATGTCAGAAGAAAAA TTTG ACG CAAA ACTAGAACAGCTATC SSU98_1700 1603480 - 1603749 + | MF3-like protein TERM 2086 1603850 - 1603891 + GF 70 -3.9 -4.84311 | opp_overlap 1603864, overlap 1603889 AACAAAAATATGCAA GAGAGGGGA-ACTCAGACA TTTACC TGTC-GAGTCTACCTTCTC TTTTCTTATGTCACG SSU98_1701 1603844 - 1603963 + | putative phosphotyrosine protein phosphatase SSU98_1702 1603935 - 1604354 + | putative phosphotyrosine protein phosphatase TERM 2087 1604825 - 1604815 - g 91 -8.2 -4.74103 | CGGGCAATTTAAAAA CGGC TAT GCCG ATGGAAAAGGAAAAT SSU98_1703 1604486 - 1604908 + | hypothetical protein SSU98_1704 1604898 - 1606307 + | acyltransferase TERM 2088 1606642 - 1606628 - g 71 -10 -2.6342 | overlap 1606624 CTTGAAAGCAATGGA GGCGAA GTC TTCGCC CAAACGATAAAAAAT SSU98_1705 1606304 - 1606696 + | acyltransferase TERM 2089 1606712 - 1606734 + T 100 -12.8 -4.61527 | opp_overlap 1606709 ATTTATACATCATCA TCCTCTGAGA ATT TCTCGGAGGA TTTTTGCACGATTTT TERM 2090 1606907 - 1606886 - T 93 -6.6 -5.55698 | opp_overlap 1606886 GACAAGTTAAAAAAA CTCCTACC TTTTAC AGTAGGAG TTGGTGTCAAATTGA SSU98_1706 1607576 - 1606989 - | membrane-associated phospholipid phosphatase TERM 2091 1607585 - 1607606 + rH 70 -5.3 -4.44046 | gap 1, opp_overlap 1607585 TCTTCATACAGTATA GTTT-ACCTT ATA AAGGTTAAAC TTTCTTTAAAATAGG SSU98_1708 1608206 - 1607601 - | hypothetical protein TERM 2092 1608125 - 1608139 + gH 73 -6.4 -4.29981 | opp_overlap 1608125 ATACTGCTGAGAGAA TGGCGA TAA TCGTCA TTTTGCGTGTGTTTG SSU98_1707 1608191 - 1608310 + | hypothetical protein TERM 2093 1608466 - 1608448 - TR 81 -5.3 -5.23316 | gap 1, opp_overlap 1608448, overlap 1608449 1608450 CATCATACCAAAAAA GC-CTTGC ATTT GCAAGAGC TTGGTAAGTTTTCAC SSU98_1709 1608858 - 1608481 - | rRNA methyltransferase SSU98_1710 1609027 - 1608869 - | hypothetical protein TERM 2094 1609248 - 1609267 + r 74 -9.4 -3.05384 | opp_overlap 1609246, overlap 1609249 TCAGCAAACAGCATG GTGAATGA TGAT TCATTCAC TTAACTCACAACAGG TERM 2095 1609460 - 1609474 + r 78 -10 -3.36273 | ATTGATTGGCTTTTA CAGTCC AGT GGACTG TTAATATTGAGGCGA TERM 2096 1609599 - 1609586 - R 91 -6.7 -5.27206 | opp_overlap 1609586 TATACAGAACAAAAA GTAGG TTGC CCTAC TTCTGCTTATTTCTT SSU98_1711 1610566 - 1609835 - | 16S rRNA uridine-516 pseudouridylate synthase family protein scpB 1611131 - 1610556 - | segregation and condensation protein B scpA 1611828 - 1611109 - | segregation and condensation protein A xerD 1612559 - 1611828 - | site-specific tyrosine recombinase XerD-like protein SSU98_1715 1613014 - 1612556 - | CBS domain-containing protein SSU98_1716 1613538 - 1613011 - | phosphoesterase SSU98_1717 1614521 - 1613511 - | fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein SSU98_1718 1615312 - 1614518 - | glutamate racemase TERM 2097 1615342 - 1615324 - R 70 -8.2 -3.43961 | opp_overlap 1615323 CCATAATACTGAGAA TAGCCAGA AAA TCTGACTA GCCTTTCTTTTCTAC TERM 2098 1615395 - 1615366 - R 100 -8.7 -5.08824 | gap 1, opp_overlap 1615366 1615372 TTTCTACTCAAAAAA TGGGATCTGGGA ATGAATA TCCCAG-TCCCA GTTTGATTATTTTTT TERM 2099 1615366 - 1615395 + r 71 -8.7 -3.15181 | gap 1, opp_overlap 1615366, overlap 1615372 TTTCTACTCAAAAAA TGGGATCTGGGA ATGAATA TCCCAG-TCCCA GTTTGATTATTTTTT SSU98_1719 1615638 - 1615402 - | hypothetical protein TERM 2100 1615676 - 1615692 + r 74 -8.1 -3.65529 | AAAAAGTATACTTCT GATTGTT TTT AACAATC TTTCAATAACCCTAT SSU98_1720 1616985 - 1615738 - | putative diaminopimelate decarboxylase TERM 2101 1616881 - 1616898 + g 75 -5.5 -4.77036 | opp_overlap 1616874, overlap 1616874 TGCATTAAGGGCACG GGCCTTC TCAC GAATGCC TTTTTCATCATACAA TERM 2102 1617705 - 1617695 - g 71 -6.8 -4.07885 | opp_overlap 1617683 1617682 GACCTCCTTGCAAAA GGAG CTT CTCC GGAAGAGGTTCAAAC TERM 2103 1617743 - 1617733 - g 84 -5.4 -5.40873 | AACACAAAAAGAAAA CTTG CTT CAAG AAATCTTTAACTTCC SSU98_1721 1617119 - 1618450 + | cysteine aminopeptidase C TERM 2104 1618452 - 1618498 + T 78 -9.7 -3.3382 | opp_overlap 1618455 1618456 1618469, overlap 1618455 1618460 1618462 1618469 GAGCTCTAGCATAAC AAACGACATATAAAAAAGAGG TAAAT CCTCTTTTTTATATGTCATAA TTAGTCTCTACTCAA TERM 2105 1618455 - 1618495 + T 100 -15.8 -2.83613 | opp_overlap 1618455 1618456 1618469, overlap 1618452 1618460 1618462 1618469 CTCTAGCATAACAAA CGACATATAAAAAAGAGG TAAAT CCTCTTTTTTATATGTCA TAATTAGTCTCTACT TERM 2106 1618495 - 1618455 - T 100 -18 -4.35483 | opp_overlap 1618455 1618452 1618460 1618462 1618469, overlap 1618456 1618469 CTCTAGCATAACAAA CGACATATAAAAAAGAGG TAAAT CCTCTTTTTTATATGTCA TAATTAGTCTCTACT TERM 2107 1618494 - 1618456 - T 100 -19.3 -3.20808 | opp_overlap 1618455 1618452 1618460 1618462 1618469, overlap 1618455 1618469 TCTAGCATAACAAAC GACATATAAAAAAGAGG TAAAT CCTCTTTTTTATATGTC ATAATTAGTCTCTAC TERM 2108 1618460 - 1618490 + T 86 -12.9 -2.87404 | opp_overlap 1618456 1618455 1618469, overlap 1618455 1618452 1618462 1618469 GCATAACAAACGACA TATAAAAAAGAGG TAAAT CCTCTTTTTTATA TGTCATAATTAGTCT TERM 2109 1618462 - 1618488 + T 79 -11.1 -2.98282 | opp_overlap 1618456 1618455 1618469, overlap 1618460 1618455 1618452 1618469 ATAACAAACGACATA TAAAAAAGAGG TAAAT CCTCTTTTTTA TATGTCATAATTAGT TERM 2110 1618481 - 1618469 - T 88 -4.8 -5.43414 | opp_overlap 1618469 1618462 1618460 1618455 1618452, overlap 1618456 1618455 ACGACATATAAAAAA GAGG TAAAT CCTC TTTTTTATATGTCAT TERM 2111 1618469 - 1618481 + T 88 -4.8 -5.43414 | opp_overlap 1618456 1618455 1618469, overlap 1618462 1618460 1618455 1618452 ACGACATATAAAAAA GAGG TAAAT CCTC TTTTTTATATGTCAT SSU98_1722 1619200 - 1618499 - | putative integral membrane protein SSU98_1723 1619705 - 1619424 - | hypothetical protein SSU98_1725 1620492 - 1619752 - | rRNA methylase TERM 2112 1620129 - 1620113 - GH 73 -6.5 -4.28018 | overlap 1620114 AATACTCCATCAAAA CCAGCTG CAT CAGCTGT ACGAATCATTGTCCC TERM 2113 1620128 - 1620114 - GH 77 -10 -3.16088 | overlap 1620113 ATACTCCATCAAAAC CAGCTG CAT CAGCTG TACGAATCATTGTCC SSU98_1724 1620491 - 1620589 + | hypothetical protein TERM 2114 1620775 - 1620789 + G 70 -10 -2.54745 | opp_overlap 1620774 1620775, overlap 1620774 1620774 GCTCAGTCAGATAAT GCTGAG AAG CTCAGC CATTTTATCCATGAA TERM 2115 1620789 - 1620775 - g 71 -10 -2.7094 | opp_overlap 1620775 1620774 1620774, overlap 1620774 GCTCAGTCAGATAAT GCTGAG AAG CTCAGC CATTTTATCCATGAA SSU98_1726 1620598 - 1620903 + | acylphosphatase TERM 2116 1621080 - 1621109 + GF 72 -9.5 -2.67122 | gap 1, overlap 1621074 1621079 1621075 TCCTACAGGTCCCAT TTGGG-ATTGGTTG GGA CAACCAATGTCCAA CTTGATTCGCTTTTT SSU98_1727 1620907 - 1621740 + | preprotein translocase subunit YidC SSU98_1728 1621637 - 1621888 + | preprotein translocase subunit YidC TERM 2117 1621896 - 1621918 + T 100 -10.7 -4.84311 | opp_overlap 1621895 1621894 CTAGATAAAAAATCG CAACCATCT ATTTC AGATGGTTG TTTTCTTATATAGAC TERM 2118 1622080 - 1622059 - T 100 -9.5 -4.96848 | TTGTCTATACAAAAA GAGAGAATC TTTC GACTCTCTC CACACCTTATTTCGT greA 1622569 - 1622087 - | transcription elongation factor GreA TERM 2119 1622131 - 1622163 + g 100 -8.5 -5.42259 | overlap 1622128 TTACATCATAGCTAC CAGCAGGTGTTTCAA TTG TTGCAACATCTCCTG TTTTTTTACCAATCA TERM 2120 1622632 - 1622603 - R 100 -15.3 -4.2558 | opp_overlap 1622603 1622608, overlap 1622608 TATTTTTCATGAAAA CAAAATTATGTGG AAAA CCACATAATTTTG TTTTAAGAATTTACT TERM 2121 1622603 - 1622632 + r 100 -15.3 -4.17491 | opp_overlap 1622603 1622608, overlap 1622608 TATTTTTCATGAAAA CAAAATTATGTGG AAAA CCACATAATTTTG TTTTAAGAATTTACT TERM 2122 1622608 - 1622627 + r 100 -9.4 -5.08255 | opp_overlap 1622603 1622608, overlap 1622603 TTCATGAAAACAAAA TTATGTGG AAAA CCACATAA TTTTGTTTTAAGAAT TERM 2123 1622627 - 1622608 - R 100 -9.4 -5.13722 | opp_overlap 1622608 1622603, overlap 1622603 TTCATGAAAACAAAA TTATGTGG AAAA CCACATAA TTTTGTTTTAAGAAT SSU98_1730 1624460 - 1622643 - | periplasmic solute-binding protein TERM 2124 1624270 - 1624286 + g 74 -4.3 -5.06414 | ACTTTTACAATTTCA GTCTCTC TAT GGGGGGC TTTTTCTTCGGCAAG SSU98_1731 1625125 - 1624532 - | histone acetyltransferase HPA2-like acetyltransferase TERM 2125 1625039 - 1625069 + gr 100 -10.4 -5.08088 | opp_overlap 1625045 CTCCCTTATATAGCG GAAAAACAGGGGCC ATA GGCCTCCGTCTTTC TTTTTATTGGACGTT TERM 2126 1625063 - 1625045 - GR 86 -8 -4.65838 | opp_overlap 1625039 TATATAGCGGAAAAA CAGGGGCC ATA GGCCTCCG TCTTTCTTTTTATTG murC 1626404 - 1625073 - | UDP-N-acetylmuramate--L-alanine ligase TERM 2127 1625776 - 1625805 + gr 79 -3 -5.32565 | gap 1 GTGATACGACGAAGT TGCTCATCTTC ACCAAAAAC GAAGA-GAGCA TTTTTTACTTGCTTC SSU98_1733 1627068 - 1626406 - | hypothetical protein SSU98_1734 1630260 - 1627147 - | SNF2 family DNA/RNA helicase TERM 2128 1627805 - 1627818 + g 71 -2.4 -5.17744 | ATTTGTTGAAGCTGG GCTA GGTAGA TAGC TTTTTGTTCATCTGT TERM 2129 1629951 - 1629941 - G 71 -6.8 -4.18908 | opp_overlap 1629940, overlap 1629929 AGACCGCCAAAATAA GTCC GAC GGAC GGTTTCCTTATGTTG SSU98_1735 1630450 - 1630322 - | hypothetical protein TERM 2130 1630374 - 1630355 - GR 85 -5.7 -5.17353 | opp_overlap 1630355 ATAGGTATCAAAAAA CACCAGC AGGTAA ACTGGTG TCTCTAATGAATAGC SSU98_1736 1630686 - 1630378 - | hypothetical protein SSU98_1737 1631026 - 1630688 - | major facilitator superfamily permease TERM 2131 1631081 - 1631092 + r 73 -5.8 -4.53439 | opp_overlap 1631074 1631081 GGTGCAAAGAAAAAA GAGG TTGC CCTC TTTATTTCCGTTTCC TERM 2132 1631092 - 1631081 - R 91 -5.8 -5.63517 | opp_overlap 1631081, overlap 1631074 GGTGCAAAGAAAAAA GAGG TTGC CCTC TTTATTTCCGTTTCC engA 1632404 - 1631094 - | GTP-binding protein EngA SSU98_1739 1632947 - 1632423 - | nitroreductase SSU98_1740 1634031 - 1633132 - | primosomal protein DnaI TERM 2133 1633425 - 1633441 + g 89 -6.5 -5.36441 | opp_overlap 1633426, overlap 1633426 TCCGCTCCTTGACAG AGCCATC TTT GATGGCA TTTTTTATATCGACA TERM 2134 1633426 - 1633440 + g 84 -10 -3.81141 | opp_overlap 1633426, overlap 1633425 CCGCTCCTTGACAGA GCCATC TTT GATGGC ATTTTTTATATCGAC TERM 2135 1633440 - 1633426 - G 72 -10 -2.87132 | opp_overlap 1633426 1633425 CCGCTCCTTGACAGA GCCATC TTT GATGGC ATTTTTTATATCGAC SSU98_1741 1635182 - 1634031 - | replication initiation/membrane attachment protein TERM 2136 1635101 - 1635091 - G 74 -6.8 -4.30978 | GCTAATGCATCAAAA CCGA TAA TCGG CTGGTAGCATTTGCT SSU98_1742 1635660 - 1635169 - | transcriptional regulator NrdR TERM 2137 1635743 - 1635721 - R 100 -8.5 -5.3658 | ATGACAAAAATAAAA GAAAGCGAG AATTA CTCACTTTC TACCAATAATTCATC SSU98_1743 1636862 - 1635732 - | permease TERM 2138 1636098 - 1636082 - G 83 -8.7 -4.1899 | overlap 1636084 GGACCCCAGCCAAAA TACCAGC CAT GCTGGCA TAAGGAATTCCTGAG TERM 2139 1636096 - 1636084 - G 75 -9.1 -3.69483 | overlap 1636082 ACCCCAGCCAAAATA CCAGC CAT GCTGG CATAAGGAATTCCTG TERM 2140 1636650 - 1636666 + g 86 -6.7 -5.03715 | opp_overlap 1636663 CAAAGACCGCTTGGA TTTCTTT AAA AAAGAAA TTTTTTCAAACTGAT TERM 2141 1636673 - 1636663 - G 74 -4 -5.0133 | opp_overlap 1636650 GATTTCTTTAAAAAA GAAA TTT TTTC AAACTGATCTTCTAA TERM 2142 1636937 - 1636921 - R 100 -10.9 -5.01422 | opp_overlap 1636920 1636923 TTATAGAAAAAGAAA GAGGGAA AGC TTCCCTC CTCTCTACTCTAAAT SSU98_1744 1637641 - 1636952 - | response regulator TERM 2143 1637691 - 1637725 + r 82 -8 -4.44548 | gap 1, opp_overlap 1637700, overlap 1637697 GAATCGTATTATGAC TAGAA-AGAAGGGCG CTTCCA CGCCCATCTTTTCTA TTTTGATTCGCTATA TERM 2144 1637697 - 1637718 + r 85 -7.2 -4.93333 | opp_overlap 1637700, overlap 1637691 TATTATGACTAGAAA GAAGGGCG CTTCCA CGCCCATC TTTTCTATTTTGATT TERM 2145 1637715 - 1637700 - R 79 -8.2 -4.12254 | opp_overlap 1637697 1637691 TATGACTAGAAAGAA GGGCGC TTCC ACGCCC ATCTTTTCTATTTTG SSU98_1745 1639150 - 1637723 - | 6-phosphogluconate dehydrogenase TERM 2146 1638079 - 1638098 + g 71 -2.1 -5.14626 | TTTTTGCGATTTCAC CAAATGG CAAGTT CCAGTTG TTTTCTTTTGATGCT SSU98_1746 1639786 - 1639247 - | hypothetical protein SSU98_1747 1640713 - 1639796 - | hypothetical protein SSU98_1748 1640951 - 1640727 - | hypothetical protein SSU98_1749 1642312 - 1640969 - | superfamily II DNA/RNA helicase TERM 2147 1642387 - 1642372 - R 100 -10.4 -4.93365 | GTGGACAAGCAAAAA GGACGG ATAC CCGTCC TAATCAACTCTCACT SSU98_1750 1642684 - 1642391 - | phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific SSU98_1751 1643226 - 1642579 - | ABC-type uncharacterized transport system, ATPase component TERM 2148 1643306 - 1643293 - R 93 -6.7 -5.53288 | opp_overlap 1643293 GTCAAGGTAAAAAAA CAGCA TTTC TGCTG TTTCTGACATTTTAT mraY 1644316 - 1643318 - | phospho-N-acetylmuramoyl-pentapeptide-transferase SSU98_1753 1646567 - 1644318 - | cell division protein FtsI/penicillin-binding protein 2 TERM 2149 1646469 - 1646457 - G 91 -5.5 -5.69068 | opp_overlap 1646466, overlap 1646465 TAAAAAGAGAAAAAA GACGA AAA CCGTC AAAAGAAGTAGGCTC SSU98_1754 1646890 - 1646567 - | protein required for the initiation of cell division mraW 1647872 - 1646901 - | S-adenosyl-methyltransferase MraW TERM 2150 1647260 - 1647301 + g 72 -7.3 -3.96483 | overlap 1647261 1647263 TCTTCTTAAGTTCCT TGGCTGGCTTGGCAGATTT GATC AGCTCTGCCAACTCAGTCG TTGTTTCAATCGGCT TERM 2151 1647903 - 1647880 - H 73 -5.5 -4.63479 | overlap 1647887 1647897 1647898 TACCACAAATTAAAA TAAAAAGTT GTTGCA AACTTTTTA CAAAAAAACTGTCAA TERM 2152 1647931 - 1647912 - H 81 -2.9 -5.60993 | overlap 1647913 CTTTTTACAAAAAAA CTGTCAA ATATAG TTGACAA CTTATATGAACAGGT TERM 2153 1648069 - 1648053 - H 76 -6.6 -4.37734 | opp_overlap 1648051 1648048 1648053 GACAACAATTTAAAA GGATAG TCAAC CTATCC TCTCATTTTTAGCCA SSU98_1756 1648122 - 1648310 + | transcriptional regulator SSU98_1757 1648321 - 1648854 + | hemolysin-like protein SSU98_1758 1648869 - 1649069 + | hypothetical protein SSU98_1759 1649080 - 1650162 + | hypothetical protein TERM 2154 1650361 - 1650349 - g 76 -2.7 -5.35721 | overlap 1650350 ACAGAAGAAGAAAAA CGATA CTT TATCA TTCAAGCCATCTTTG SSU98_1760 1650175 - 1650519 + | major facilitator superfamily permease SSU98_1761 1650509 - 1650856 + | hypothetical protein SSU98_1762 1650903 - 1651337 + | hypothetical protein TERM 2155 1651416 - 1651402 - T 86 -10 -4.0371 | GAGGTTGGAGATAAA GCGAAC AAA GTTCGC ATCAAAAGCCGCAGG TERM 2156 1651636 - 1651611 - T 75 -6.9 -4.30793 | opp_overlap 1651611 1651624, overlap 1651608 CGATATAACAAAGAA GACACAGCC TGATGAAC GACTGTGTC TTTCCTTTTTAGAAA SSU98_1763 1652622 - 1651645 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase SSU98_1764 1653685 - 1652594 - | thiamine biosynthesis lipoprotein TERM 2157 1653702 - 1653672 - GR 75 -6.9 -4.31587 | opp_overlap 1653672, overlap 1653669 CCCCAAAAATAAGAA GACACAGTAGC CAAACAAGT GCGACTGTGTC TTTTCTGTATAGACT TERM 2158 1653672 - 1653702 + gr 81 -6.9 -4.61199 | opp_overlap 1653672 1653669 CCCCAAAAATAAGAA GACACAGTAGC CAAACAAGT GCGACTGTGTC TTTTCTGTATAGACT SSU98_1765 1654200 - 1653721 - | major membrane immunogen, membrane-anchored lipoprotein SSU98_1766 1654587 - 1654279 - | geranylgeranyl pyrophosphate synthase SSU98_1767 1655269 - 1654562 - | geranylgeranyl pyrophosphate synthase TERM 2159 1655184 - 1655209 + gr 72 -6.2 -4.28254 | overlap 1655185 ACTGCTGGATGCAGG ACCATCATCT CAGATA AGATGATGGA TTTTACCTCTTCAAG TERM 2160 1655185 - 1655208 + gr 77 -9.7 -3.1647 | overlap 1655184 CTGCTGGATGCAGGA CCATCATCT CAGATA AGATGATGG ATTTTACCTCTTCAA SSU98_1768 1657180 - 1655288 - | NADH dehydrogenase, FAD-containing subunit SSU98_1769 1657688 - 1657906 + | hypothetical protein TERM 2161 1657905 - 1657933 + F 74 -4.6 -4.91109 | opp_overlap 1657899 1657908, overlap 1657908 TAGCAGAATGGAAAT AAATCTCCCTAG GTCAA CTAAGGAGATTC TTTTTATGGTCCGCA TERM 2162 1657930 - 1657908 - f 86 -8.5 -4.51765 | opp_overlap 1657908 1657905, overlap 1657899 CAGAATGGAAATAAA TCTCCCTAG GTCAA CTAAGGAGA TTCTTTTTATGGTCC TERM 2163 1657908 - 1657930 + F 76 -6.3 -4.56153 | opp_overlap 1657899 1657908, overlap 1657905 CAGAATGGAAATAAA TCTCCCTAG GTCAA CTAAGGAGA TTCTTTTTATGGTCC TERM 2164 1658837 - 1658827 - g 73 -5.4 -4.60924 | CAAATCGGGCAAAAA CGTA GCC TACG AAAACTAGGGTTCCA SSU98_1770 1658152 - 1659519 + | Trk family potassium uptake protein TERM 2165 1659627 - 1659605 - g 71 -9.2 -2.91736 | overlap 1659602 1659597 AACATTACACAATTA CGATTGCAAT ATC ATTGCTATCG ATAATCATGAGCAAC SSU98_1771 1659531 - 1660196 + | K+ transport system, NAD-binding component TERM 2166 1660255 - 1660221 - f 84 -10.1 -3.64947 | opp_overlap 1660232, overlap 1660219 1660224 AAAATCAAAAACAGA CTAGCTCCAAAGGTT TGGGG AACCTTTGGAGGTTG GAGATAGGGCGAACG TERM 2167 1660252 - 1660224 - f 77 -10.4 -2.90234 | opp_overlap 1660232, overlap 1660221 1660219 ATCAAAAACAGACTA GCTCCAAAGGTT TGGGG AACCTTTGGAGG TTGGAGATAGGGCGA TERM 2168 1660358 - 1660328 - f 90 -12.6 -3.14878 | opp_overlap 1660336, overlap 1660336 TGTTTCAAGGTAACA GGCTGAAAGGCTCC ACT GGAGCCTTTCACTC ATCAAATCAAGTCAA TERM 2169 1660336 - 1660350 + F 91 -11.4 -3.68529 | opp_overlap 1660328 1660336 GGTAACAGGCTGAAA GGCTCC ACT GGAGCC TTTCACTCATCAAAT TERM 2170 1660350 - 1660336 - f 87 -11.4 -3.6106 | opp_overlap 1660336, overlap 1660328 GGTAACAGGCTGAAA GGCTCC ACT GGAGCC TTTCACTCATCAAAT SSU98_1772 1660517 - 1661854 + | DinF TERM 2171 1661887 - 1661859 - T 91 -9.7 -4.45517 | opp_overlap 1661864, overlap 1661864 AAAGTATTTAGAAAA GAAAACGCATGAA ACT CTCATGCGTTTTT AAAATAGTATTTTCG TERM 2172 1661882 - 1661864 - T 100 -9.6 -5.19275 | opp_overlap 1661864, overlap 1661859 ATTTAGAAAAGAAAA CGCATGAA ACT CTCATGCG TTTTTAAAATAGTAT TERM 2173 1661864 - 1661882 + T 90 -8.9 -4.63928 | opp_overlap 1661859 1661864 ATTTAGAAAAGAAAA CGCATGA AACTC TCATGCG TTTTTAAAATAGTAT SSU98_1773 1662253 - 1661876 - | hypothetical protein TERM 2174 1662017 - 1662007 - G 75 -3.2 -5.10208 | overlap 1662014 CAAGGCTAACAAAAA GGAA TAT TCCC AGAAGGACCAATAAT TERM 2175 1662377 - 1662413 + r 83 -5.8 -5.21709 | overlap 1662379 AGCGGGCTATAATAA TCCTGCTCATCAGCCT AGAGC GGGCTGTTGGGTAGCA TTTTTTAGTCTGAGC TERM 2176 1662552 - 1662536 - R 71 -7.3 -3.91716 | opp_overlap 1662535 1662538 CTAGCTTGGAAATAA GACTTGC GAA ACAAGTC ACTTTCGTAGAGTAT TERM 2177 1662684 - 1662652 - R 81 -11.5 -2.7185 | opp_overlap 1662652 1662660, overlap 1662660 AGTAGGCTGCAAGCA CAAAAAAAGACTAGA AAA CCTAGTCTTTCCTTG TTTATTATCATTTAT TERM 2178 1662652 - 1662684 + r 76 -6.4 -4.43714 | opp_overlap 1662652 1662660, overlap 1662660 AGTAGGCTGCAAGCA CAAAAAAAGACTAG AAAAC CTAGTCTTTCCTTG TTTATTATCATTTAT TERM 2179 1662676 - 1662660 - R 100 -7.3 -5.71983 | opp_overlap 1662652 1662660, overlap 1662652 GCAAGCACAAAAAAA GACTAGA AAA CCTAGTC TTTCCTTGTTTATTA TERM 2180 1662660 - 1662676 + r 73 -6.6 -4.20454 | opp_overlap 1662660 1662652, overlap 1662652 GCAAGCACAAAAAAA GACTAG AAAAC CTAGTC TTTCCTTGTTTATTA SSU98_1774 1662959 - 1662702 - | hypothetical protein TERM 2181 1662931 - 1662943 + g 70 -2.7 -4.99435 | TTGCGGGCCAATTCA TTGAT GCG ATCGA TTTTTGCTTGTTCCA glyS 1665005 - 1662969 - | glycyl-tRNA synthetase subunit beta glyQ 1665922 - 1665005 - | glycyl-tRNA synthetase subunit alpha SSU98_1777 1666712 - 1666233 - | Phage envelope protein SSU98_1778 1667683 - 1666979 - | hypothetical protein TERM 2182 1667759 - 1667708 - R 70 -3.2 -4.96848 | gap 1, overlap 1667709 CCTTTTATAGAAAAA TCAGCACCCTATGAACATCTTCTAA GAC CTA-ACGACGTTCATAAAATGCTGT TGCATGACTACCCGG SSU98_1779 1668557 - 1667865 - | ABC-type metal ion transport system, permease component SSU98_1780 1669631 - 1668558 - | ABC-type metal ion transport system, ATPase component SSU98_1781 1670982 - 1669615 - | acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein TERM 2183 1669665 - 1669681 + g 72 -6.5 -4.26903 | opp_overlap 1669655 1669666, overlap 1669666 CAACATGGCTATAGT AGTCAGC GAT GCTGACA TTTTCATCACCTGCA TERM 2184 1669666 - 1669680 + g 74 -10 -3.1582 | opp_overlap 1669655 1669666, overlap 1669665 AACATGGCTATAGTA GTCAGC GAT GCTGAC ATTTTCATCACCTGC TERM 2185 1669680 - 1669666 - G 71 -10 -2.63479 | opp_overlap 1669666 1669665, overlap 1669655 AACATGGCTATAGTA GTCAGC GAT GCTGAC ATTTTCATCACCTGC TERM 2186 1670910 - 1670892 - G 71 -4.6 -4.72272 | overlap 1670894 TCTGCTGAGCAAAAA TGGATTTC TTT GAAATCAA GACCTTCAACTTTTC TERM 2187 1671130 - 1671091 - R 80 -6.4 -4.84359 | opp_overlap 1671093, overlap 1671093 1671097 1671099 TTATCTCTATAAAAA CAGATAGAGGGCTGAACA ATTC TGCCCAGTCCTCAACCTA TTTACATTTTACCAA TERM 2188 1671128 - 1671093 - R 70 -6.8 -4.04397 | opp_overlap 1671093, overlap 1671091 1671097 1671099 ATCTCTATAAAAACA GATAGAGGGCTGAACA ATTC TGCCCAGTCCTCAACC TATTTACATTTTACC TERM 2189 1671124 - 1671097 - R 70 -8.4 -3.37205 | opp_overlap 1671093, overlap 1671093 1671091 1671099 CTATAAAAACAGATA GAGGGCTGAACA ATTC TGCCCAGTCCTC AACCTATTTACATTT TERM 2190 1671117 - 1671099 - R 71 -8.8 -3.23488 | opp_overlap 1671093, overlap 1671097 1671093 1671091 ATAAAAACAGATAGA GGGCTGAA CAA TTCTGCCC AGTCCTCAACCTATT SSU98_1782 1671990 - 1671139 - | ABC-type metal ion transport system, periplasmic component/surface antigen TERM 2191 1671308 - 1671325 + g 80 -6.3 -4.91109 | GAATTTTCATCTTTT TGCTCTT TGTA AAGGGCA TTTTTGTAATCCAAA TERM 2192 1671349 - 1671364 + g 70 -7.6 -3.58343 | ATCCAAACCAGCTTC CAACAC AAAT GTGTTG TTTACAACTGCTGCA TERM 2193 1672089 - 1672069 - R 73 -7 -4.03234 | opp_overlap 1672051 CTTTTTTTATAGAAA GTTATAAC TTTTC GTTATAAC AAATACCCTTGCAAT TERM 2194 1672139 - 1672126 - R 100 -8.1 -5.20333 | opp_overlap 1672127 TATTGATAATAAAAA GAGGG ATAC CCCTC TTAAAATATATCTAC SSU98_1783 1672829 - 1672140 - | glutamine amidotransferase, class I TERM 2195 1673028 - 1673009 - H 81 -3.6 -5.45652 | overlap 1673010 ACGCTTAAGAAAAAA CTATACTG GAGC CAGCATAA AAAAGTCAAGCTTGA TERM 2196 1673038 - 1673052 + H 79 -3.5 -5.4477 | opp_overlap 1673038, overlap 1673038 GCATAAAAAAGTCAA GCTTG ATAAA CAGGC TTTTTTTCAAGCTTT TERM 2197 1673563 - 1673551 - g 75 -3.4 -5.17353 | AGACCGATGAAAAAA TGGT TCAAC ACCA ACTACCACTATATCG TERM 2198 1675025 - 1675009 - g 70 -5.1 -4.56597 | GCCCTTCGTGAAAAA CTACCAC TCC GTCGTAG CGACTGGTACAGCGA TERM 2199 1675442 - 1675405 - g 77 -4.9 -5.04733 | gap 1, overlap 1675409 GAATCAGAAACAAAA GCTAGTCTTATCCACTTG ACT CAAGCAGCTAAGGC-AGC CAGAAAGGAACTCTA SSU98_1784 1673311 - 1675458 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase SSU98_1785 1675462 - 1676322 + | 5,10-methylenetetrahydrofolate reductase TERM 2200 1676354 - 1676327 - T 82 -7.6 -4.45485 | opp_overlap 1676330, overlap 1676328 1676329 ATTATAGTTAGAAAA CTCCCCCTGAGC CCAA GCTCAGGGGTTA TTCTATGCCCTGTGA TERM 2201 1676353 - 1676328 - T 71 -8.9 -3.26568 | opp_overlap 1676330, overlap 1676327 1676329 TTATAGTTAGAAAAC TCCCCCTGAGC CCAA GCTCAGGGGTT ATTCTATGCCCTGTG TERM 2202 1676352 - 1676329 - T 82 -12.4 -2.55459 | opp_overlap 1676330, overlap 1676328 1676327 TATAGTTAGAAAACT CCCCCTGAGC CCAA GCTCAGGGGT TATTCTATGCCCTGT TERM 2203 1676330 - 1676351 + T 100 -15.9 -3.88946 | opp_overlap 1676329 1676328 1676327 ATAGTTAGAAAACTC CCCCTGAGC CCAA GCTCAGGGG TTATTCTATGCCCTG TERM 2204 1676651 - 1676630 - T 100 -9.5 -5.95539 | overlap 1676634 TCGTAAATAAAAAAA CTGACCTTC AAAT GAAGATCAG TTCAAGGATAATAAA SSU98_1786 1678131 - 1676671 - | permease SSU98_1787 1678464 - 1679288 + | HAD superfamily hydrolase TERM 2205 1679294 - 1679322 + F 77 -10.5 -2.80966 | opp_overlap 1679300, overlap 1679300 ATTTTTATAGACATC AAAAAACCTGATA AAC TATCAGGTTTTTG TCATATTCGTTGCAT TERM 2206 1679300 - 1679316 + F 100 -9.5 -4.98436 | opp_overlap 1679300, overlap 1679294 ATAGACATCAAAAAA CCTGATA AAC TATCAGG TTTTTGTCATATTCG TERM 2207 1679316 - 1679300 - f 100 -9.5 -5.25893 | opp_overlap 1679300 1679294 ATAGACATCAAAAAA CCTGATA AAC TATCAGG TTTTTGTCATATTCG TERM 2208 1679462 - 1679472 + G 73 -5.4 -4.65895 | TTCGAACATGAAAGC CCAT TCA ATGG TTTTTACATGAACAA SSU98_1788 1679438 - 1680502 + | putative PTS system, mannose-specific component IIAB SSU98_1789 1680534 - 1681343 + | mannose-specific PTS IIC SSU98_1790 1681361 - 1682272 + | mannose-specific PTS IID TERM 2209 1682295 - 1682280 - f 82 -11.8 -2.8507 | opp_overlap 1682280, overlap 1682277 TTATGTAATCAAGGA CCCCGC TCTT GCGGGG TTTTATGATATAATG TERM 2210 1682280 - 1682295 + F 95 -11.8 -4.52047 | opp_overlap 1682280 1682277 TTATGTAATCAAGGA CCCCGC TCTT GCGGGG TTTTATGATATAATG SSU98_1791 1682332 - 1682703 + | ManO TERM 2211 1683312 - 1683283 - g 73 -3.5 -4.92757 | gap 1, opp_overlap 1683299, overlap 1683287 GGATGAAGAAGAAAA CGTAGAGGTTCGCC GTT GGGGAACACCT-CG TGAATTCACTTTCGA SSU98_1792 1682792 - 1684195 + | hypothetical protein TERM 2212 1684210 - 1684234 + T 73 -5.7 -4.65153 | opp_overlap 1684210 AGCCATACAAAGAAA GAGCGAGGA AAAATCC TACTCGCTC TTTTCATTTATCTAA TERM 2213 1684234 - 1684210 - T 81 -7.1 -4.63044 | opp_overlap 1684210 AGCCATACAAAGAAA GAGCGAGGAAA AAT CCTACTCGCTC TTTTCATTTATCTAA SSU98_1793 1685835 - 1684246 - | Type I restriction-modification system methyltransferase subunit TERM 2214 1685004 - 1685020 + g 79 -10.9 -3.14132 | TATTGCTGTAGCCGA CCTGATG CAT CATCAGG TTCATCCGCGCCAAG SSU98_1794 1687085 - 1685880 - | restriction endonuclease S subunit TERM 2215 1687052 - 1687070 + g 84 -3.8 -5.56263 | overlap 1687053 TGAATCCGGGGAAGC GCAATCGT GGT ACGGTTGA TTTTTCTTTTGTCAT TERM 2216 1687053 - 1687069 + g 72 -7.3 -3.91317 | overlap 1687052 GAATCCGGGGAAGCG CAATCGT GGT ACGGTTG ATTTTTCTTTTGTCA SSU98_1795 1690399 - 1687193 - | Type I site-specific restriction-modification system, R (restriction) subunit and related helicase TERM 2217 1689410 - 1689420 + g 71 -6.8 -4.12188 | overlap 1689405 GGGCATTCGACTTGC CAGC CAA GCTG TTTTAAAACTAGTGA SSU98_1796 1690997 - 1690392 - | hypothetical protein TERM 2218 1690979 - 1690989 + g 71 -4 -4.81083 | overlap 1690985 GTTTCATAATTTCCC TTTC TTT GAAA TTTTTCATAATTACA TERM 2219 1691216 - 1691234 + G 78 -9.6 -3.64283 | ATTGCAGTGGCTTAT CAGGCTAG CTC CTAGTCTG TTGTTGGAAGATTTG SSU98_1797 1691091 - 1692017 + | integrase TERM 2220 1692065 - 1692044 - T 73 -6.5 -4.3586 | opp_overlap 1692039 1692036 1692034 1692044 CTACTTATAGCAAAA GACGAATCC GTAT GGAACCGTC TTTTCTTATATATAG TERM 2221 1692044 - 1692065 + T 71 -4.3 -4.87592 | opp_overlap 1692044, overlap 1692039 1692036 1692034 CTACTTATAGCAAAA GACGAATCC GTAT GGAACCGTC TTTTCTTATATATAG SSU98_1798 1692463 - 1692071 - | hypothetical protein TERM 2222 1692572 - 1692562 - R 78 -5.4 -4.91109 | CCGCCACCAGAAAAA GACT AAA AGTC CAAGTGTCATCAGCC SSU98_1799 1693539 - 1692907 - | hypothetical protein SSU98_1800 1694005 - 1693532 - | histone acetyltransferase HPA2-like acetyltransferase TERM 2223 1694074 - 1694057 - R 100 -8.5 -5.54894 | opp_overlap 1694057 AATCTATCAAAAAAA TACTAGG TCTT CCTAGTA TTTTCTAAAGCGTTG TERM 2224 1694057 - 1694074 + r 86 -8.5 -4.386 | opp_overlap 1694057 AATCTATCAAAAAAA TACTAGG TCTT CCTAGTA TTTTCTAAAGCGTTG SSU98_1801 1694842 - 1694069 - | acetyl-CoA carboxylase subunit alpha SSU98_1802 1695705 - 1694839 - | acetyl-CoA carboxylase subunit beta SSU98_1803 1697093 - 1695720 - | acetyl-CoA carboxylase biotin carboxylase subunit TERM 2225 1697249 - 1697261 + r 74 -7.7 -3.85698 | opp_overlap 1697248 AGGTTGGAGATAGAG CGAAC GAA GTTCG TTTCTCCAAGAGCAG SSU98_1804 1697809 - 1697387 - | 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase SSU98_1805 1698282 - 1697806 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit SSU98_1806 1699518 - 1698283 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2226 1698700 - 1698680 - G 86 -11.9 -3.02511 | opp_overlap 1698673 TTCATGGCCTTAATA GCACCCAGA CCT TCTGGATGC GGAGAAGTCATGTGG fabG 1700278 - 1699544 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 2227 1699611 - 1699595 - G 70 -9.5 -2.87132 | CTGTCCTGTTAGATA TTCTTGC TTG GCAAGAA ACACTGCAACATCAG SSU98_1808 1701220 - 1700288 - | (acyl-carrier-protein) S-malonyltransferase TERM 2228 1700483 - 1700500 + g 71 -2 -5.15634 | gap 1, overlap 1700486 CACTTGACGGGGCAA GAGGGAC TTGAT GTCC-TC TTTTTTCATAACCTC SSU98_1809 1702175 - 1701210 - | 2-nitropropane dioxygenase-like protein TERM 2229 1702260 - 1702239 - R 74 -8 -3.97674 | TCATTAGGTAAACAA GTGAAGGG TTGCCC CCCCTCAC TCAAAAAATAGTTTG TERM 2230 1702331 - 1702320 - R 76 -4.4 -5.13741 | overlap 1702314 1702309 TTAACTTAAGAAAAA TGCT ACAT AGCA CTCTCCTTAACAGTC acpP 1702572 - 1702348 - | acyl carrier protein SSU98_1811 1703609 - 1702632 - | 3-oxoacyl-(acyl carrier protein) synthase III SSU98_1812 1703902 - 1703606 - | transcriptional regulator SSU98_1813 1704911 - 1704114 - | enoyl-CoA hydratase TERM 2231 1705057 - 1705045 - R 84 -7.7 -4.58395 | GTGACGTCCGAAAAA GATGG AGG CCATC ATCGCAATATAAAAT SSU98_1814 1705988 - 1705347 - | phosphatase/phosphohexomutase TERM 2232 1707417 - 1707437 + G 72 -6.1 -4.34444 | opp_overlap 1707417, overlap 1707418 TCAACTTGGCAATGA TTTCACAGG GAG CCAGTGAAG TTTCTGTTATGTTCG TERM 2233 1707488 - 1707476 - g 82 -6.9 -4.88795 | ACCGAAGAAAAGAAA CGCGC CCT GCACG CACTCTATGAAGCTT SSU98_1815 1706159 - 1707520 + | aspartate kinase TERM 2234 1707590 - 1707608 + T 71 -8.8 -3.17218 | overlap 1707588 1707593 TGATTTGATGAGTGT CAAGCTCC ATT GGAGCTAG TCTGATTTTAATTTT TERM 2235 1707699 - 1707659 - T 84 -4.3 -5.47159 | gap 2, opp_overlap 1707659 TTGAATAAACAAAAA TAGCTTAGAA-T-CAACGT TTCTG ACGATGCAATTCTAAGCTA TTTTTTATTTTTTAT TERM 2236 1707659 - 1707699 + T 95 -5 -6.07374 | gap 2, opp_overlap 1707659 TTGAATAAACAAAAA TAGCTTAGAA-T-CAACGTT TCT GACGATGCAATTCTAAGCTA TTTTTTATTTTTTAT TERM 2237 1708184 - 1708170 - T 71 -8.6 -3.18383 | opp_overlap 1708153 1708170 AGGCTCAGGTACGAA TAGTCC ACT GGACTA TTCGTATCCCCCAGA TERM 2238 1708170 - 1708184 + T 71 -8.6 -3.25823 | opp_overlap 1708170, overlap 1708153 AGGCTCAGGTACGAA TAGTCC ACT GGACTA TTCGTATCCCCCAGA alr 1709562 - 1708459 - | alanine racemase TERM 2239 1709396 - 1709381 - G 73 -2.5 -5.19879 | TTCGAAACACAAAAA CCAGC TGCTTG ACTGG ATAACTTTTTCGCTA acpS 1709914 - 1709555 - | 4'-phosphopantetheinyl transferase TERM 2240 1710017 - 1709996 - R 100 -14.5 -4.31329 | opp_overlap 1709991 CTAAAAATTGCAAAA GGACTGGAC AGCC GTCCAGTCC ACGCGTCATTCCTAT secA 1712563 - 1710029 - | preprotein translocase subunit SecA TERM 2241 1712719 - 1712688 - R 79 -7.4 -4.4648 | ATTTTTACCACAAAA CACCTCCTAG TCACAATAACTC CTAGGAGGTG AAAAATTTATAAAAT SSU98_1819 1716239 - 1712874 - | ribonucleases G and E TERM 2242 1715004 - 1715017 + g 86 -3.1 -5.68438 | TTCTTTGTTGAACAA CAGTA AATC TGCTG TTTTTTGTTTCATAG TERM 2243 1715885 - 1715858 - G 70 -7.2 -3.75738 | gap 1, opp_overlap 1715863, overlap 1715863 CATTATGAGCAATAA CATCACCCTTGTT CAT AACAAGGAT-ATG TGGAAAGTCATGAAT TERM 2244 1716577 - 1716606 + r 75 -9.4 -3.17571 | TTATAGTCATCGTTA GTTTTTGAGGCG CTGTTT CGGCTCAAAAAC TTAAATTGAAGAGTT TERM 2245 1716754 - 1716724 - R 100 -12.8 -4.96848 | opp_overlap 1716727 TTTTTTAGATAAAAA GAAGTGAGAGTT ACATAAA AACTCTCACTTC ACTGTCAAGTTATTG TERM 2246 1716727 - 1716751 + r 71 -8.7 -3.13475 | opp_overlap 1716724 TTTAGATAAAAAGAA GTGAGAGTT ACATAAA AACTCTCAC TTCACTGTCAAGTTA SSU98_1820 1717780 - 1716848 - | transcriptional regulator/sugar kinase TERM 2247 1717204 - 1717219 + g 72 -7.6 -3.81461 | opp_overlap 1717197 1717196 CCAAACACCCATTGT GGAATG GACA CATTCC TTTAAATTCATGTTT TERM 2248 1717812 - 1717782 - R 73 -7.1 -4.07968 | gap 2, opp_overlap 1717784 1717786 1717787 1717793, overlap 1717787 1717793 TAACATATAAGCAAA CAGAAGAAAAAGGCT GAA AGCCTTTTTC--CTG TTAATTATGTAGTAG TERM 2249 1717786 - 1717810 + r 78 -10.1 -3.32424 | opp_overlap 1717782 1717787 1717793, overlap 1717784 1717787 1717793 ATATAAGCAAACAGA AGAAAAAGGCT GAA AGCCTTTTTCC TGTTAATTATGTAGT TERM 2250 1717809 - 1717787 - R 100 -13.6 -3.91905 | opp_overlap 1717786 1717784 1717787 1717793, overlap 1717782 1717793 TATAAGCAAACAGAA GAAAAAGGCT GAA AGCCTTTTTC CTGTTAATTATGTAG TERM 2251 1717787 - 1717809 + r 93 -13.6 -2.58731 | opp_overlap 1717787 1717782 1717793, overlap 1717786 1717784 1717793 TATAAGCAAACAGAA GAAAAAGGCT GAA AGCCTTTTTC CTGTTAATTATGTAG TERM 2252 1717793 - 1717803 + r 82 -6.8 -4.90136 | opp_overlap 1717793 1717787 1717782, overlap 1717787 1717786 1717784 CAAACAGAAGAAAAA GGCT GAA AGCC TTTTTCCTGTTAATT TERM 2253 1717803 - 1717793 - R 91 -6.8 -5.33331 | opp_overlap 1717787 1717786 1717784 1717793, overlap 1717787 1717782 CAAACAGAAGAAAAA GGCT GAA AGCC TTTTTCCTGTTAATT SSU98_1821 1719737 - 1717860 - | phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific SSU98_1822 1719826 - 1721397 + | Beta-fructosidases (levanase/invertase) TERM 2254 1721411 - 1721390 - g 71 -6.7 -4.08945 | gap 1 ATTATGGTCGCAAAA CTAACTGATG TCG CA-CAGTTAG CTGGGGTCAGCCCAA TERM 2255 1721786 - 1721770 - g 79 -10.9 -3.08679 | TCTCGGTATCCAAGA CTACGAC CGT GTCGTAG CTCCAATTATCGCTT SSU98_1823 1721378 - 1722343 + | transcriptional regulator TERM 2256 1722376 - 1722349 - T 100 -11.4 -5.74122 | opp_overlap 1722349 TAGTATATAAAAAAA GCTGTACCTAAT AAAA ATTAGGTGCAGC TTTTTTGTGATACAT TERM 2257 1722349 - 1722376 + T 100 -13.6 -5.31877 | opp_overlap 1722349 TAGTATATAAAAAAA GCTGTACCTAAT AAAA ATTAGGTGCAGC TTTTTTGTGATACAT TERM 2258 1722431 - 1722415 - T 78 -3.7 -5.26875 | opp_overlap 1722415 TTCTCAAGTAAAAAA GAAGC TCATCAG GCTTC TTCTTTAATAAACTG nusB 1722845 - 1722423 - | transcription antitermination protein NusB SSU98_1825 1723224 - 1722832 - | hypothetical protein SSU98_1826 1723686 - 1723252 - | translation elongation factor P (EF-P) SSU98_1827 1724933 - 1724001 - | Xaa-Pro aminopeptidase TERM 2259 1724799 - 1724787 - G 74 -7.7 -3.95153 | overlap 1724779 1724790 CGAATCAGTCACAAA CAAGC GAC GCTTG CCACTAATGAAGACA TERM 2260 1725028 - 1725015 - R 91 -5.9 -5.77988 | opp_overlap 1725009 1725003 1725015, overlap 1725005 AGATAGAGAAAAAAA GCCGC AGAG GCGAC TTTTTATTTCAACTT TERM 2261 1725015 - 1725028 + r 78 -3.7 -5.29846 | opp_overlap 1725015 1725005, overlap 1725009 1725003 AGATAGAGAAAAAAA GCCGC AGAG GCGAC TTTTTATTTCAACTT uvrA 1727857 - 1725032 - | excinuclease ABC subunit A TERM 2262 1727579 - 1727589 + g 80 -4.6 -5.1675 | overlap 1727570 1727568 1727567 TGTCGAACGCGGATT CCGC GAT GTGG TTTTTTGGTCAATGG TERM 2263 1727920 - 1727935 + H 78 -6.2 -4.84017 | TGACGTCACATCAGT GACAAA ACAT TTTGTC TTTTTCTCGACGCTT TERM 2264 1728430 - 1728404 - g 70 -5.8 -4.33417 | opp_overlap 1728400 1728404 CTGATTTAGAAGAAA TCCAAACCTTTG AAC CAGGGGCTTGGA TTAATTTGGTCAACC SSU98_1829 1728361 - 1729305 + | Mg2+ and Co2+ transporter TERM 2265 1729589 - 1729603 + G 72 -6.4 -4.3534 | ATCCATGGTTGATGT GGCTAG ATT CTAGTC TTTTCATGCTTGCAA SSU98_1830 1729321 - 1729977 + | hypothetical protein TERM 2266 1729987 - 1730008 + T 100 -10.9 -5.07523 | opp_overlap 1729987 CAATAATAAAACAAA GCGATTGGA ATAT TCCAGTCGC TTTTGTTTATCTATA TERM 2267 1730008 - 1729987 - T 100 -8.7 -4.96427 | opp_overlap 1729987 CAATAATAAAACAAA GCGATTGGA ATAT TCCAGTCGC TTTTGTTTATCTATA TERM 2268 1730259 - 1730246 - T 95 -8.1 -4.74103 | opp_overlap 1730246 GGCGCAAGCTAAAAA GACCC GTCG GGGTC TCAATTCGCTTTCTT TERM 2269 1730339 - 1730369 + T 76 -10.6 -2.59569 | opp_overlap 1730347, overlap 1730347 AGTTTCTTGGGCGCA AGAAAAAATGGTCC ACT GGACCATTTTTTTA ATCTTCGTTTACGAA TERM 2270 1730347 - 1730361 + T 100 -10 -5.63374 | opp_overlap 1730347, overlap 1730339 GGGCGCAAGAAAAAA TGGTCC ACT GGACCA TTTTTTTAATCTTCG TERM 2271 1730361 - 1730347 - T 100 -10 -5.4505 | opp_overlap 1730347 1730339 GGGCGCAAGAAAAAA TGGTCC ACT GGACCA TTTTTTTAATCTTCG rpsR 1730606 - 1730367 - | 30S ribosomal protein S18 SSU98_1832 1731133 - 1730639 - | single-strand DNA-binding protein rpsF 1731435 - 1731145 - | 30S ribosomal protein S6 TERM 2272 1731974 - 1731946 - g 73 -5.3 -4.68593 | overlap 1731971 TCTACTACGCAAAAA GAGCTCAGCTTGA TTA TGAAGTTAAGCTC TCAGATTCGAGAACA SSU98_1834 1731675 - 1732838 + | hypothetical protein TERM 2273 1733005 - 1733043 + T 73 -9 -3.43437 | opp_overlap 1732997 1733011, overlap 1733011 1733016 ATCAACATTTTTAGT CAAAAACAGAACTTAGTC TGA GACTAAATTCTGTTGATG TTATGCAGTTTTCTC TERM 2274 1733037 - 1733011 - T 100 -13.2 -4.66163 | opp_overlap 1733011 1733005 1733016 ATTTTTAGTCAAAAA CAGAACTTAGTC TGA GACTAAATTCTG TTGATGTTATGCAGT TERM 2275 1733011 - 1733037 + T 82 -11 -3.42013 | opp_overlap 1733011, overlap 1733005 1733016 ATTTTTAGTCAAAAA CAGAACTTAGTC TGA GACTAAATTCTG TTGATGTTATGCAGT TERM 2276 1733152 - 1733123 - T 74 -2.9 -5.252 | gap 1, opp_overlap 1733140, overlap 1733127 1733138 CATTTTCACAAAAAA TAAAGACTGCCC AAACAAA GGGCAG-CCCTA TGAATTAAGCTACAA TERM 2277 1733149 - 1733127 - T 100 -8.4 -5.13354 | opp_overlap 1733140, overlap 1733123 1733138 TTCACAAAAAATAAA GACTGCCC AAACAAA GGGCAGCC CTATGAATTAAGCTA SSU98_1835 1734146 - 1733157 - | lipoate-protein ligase SSU98_1836 1734276 - 1735466 + | hypothetical protein TERM 2278 1735502 - 1735484 - T 86 -5.3 -5.35459 | opp_overlap 1735484, overlap 1735477 ATATATCACAAAAAA GAAAGCC ACATG GACTTTC TTTTTGCTTAGCTTA TERM 2279 1735484 - 1735502 + T 72 -3.9 -4.90013 | gap 1, opp_overlap 1735477 1735484 ATATATCACAAAAAA GAAAG-CC ACAT GGACTTTC TTTTTGCTTAGCTTA SSU98_1837 1737278 - 1735518 - | pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes SSU98_1838 1738940 - 1737552 - | branched-chain alpha-keto acid dehydrogenase subunit E2 TERM 2280 1739107 - 1739093 - R 70 -8.6 -3.08072 | overlap 1739088 AAGAACCAAACCAGA CTTCGA TAA TCGAAG CGGCTCAATTCTTTT SSU98_1839 1740277 - 1739282 - | pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, beta subunit TERM 2281 1740265 - 1740276 + g 71 -2.2 -5.19212 | overlap 1740224 GCAAGGCCATTACTT TGGT TTCA GCCA TTTTTTACTCCTAAT TERM 2282 1740531 - 1740488 - R 76 -6.3 -4.57837 | opp_overlap 1740488 1740487 1740493, overlap 1740493 AGAGGCTTGGAAAAA TAGATGAGCCA-TTAGTGATG TCCA CATCACTAGCTGACTC-TCTA ATTTTTCTGTGCCTC SSU98_1840 1741577 - 1740564 - | pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit SSU98_1841 1741719 - 1742423 + | hypothetical protein TERM 2283 1742440 - 1742417 - T 100 -14 -4.17878 | opp_overlap 1742417 GGAAAGCAAACGAAA GGTCTGAGTT CGTC AACTCAGACC TTTTTGTATTATTAT TERM 2284 1742417 - 1742440 + T 100 -14 -5.21506 | opp_overlap 1742417 GGAAAGCAAACGAAA GGTCTGAGTT CGTC AACTCAGACC TTTTTGTATTATTAT SSU98_1842 1742791 - 1742459 - | heme utilization/adhesion protein SSU98_1843 1743404 - 1742778 - | heme utilization/adhesion protein TERM 2285 1743760 - 1743742 - RH 76 -8 -4.08144 | overlap 1743743 1743753 CTTAGGAACTACAAA GGGCCGGG AAA CCCAGCCT AGGAATAATCATGGA TERM 2286 1743759 - 1743743 - RH 83 -11.5 -3.04404 | overlap 1743742 1743753 TTAGGAACTACAAAG GGCCGGG AAA CCCAGCC TAGGAATAATCATGG SSU98_1845 1743877 - 1743782 - | hypothetical protein SSU98_1844 1743771 - 1743893 + | hypothetical protein SSU98_1846 1744501 - 1743923 - | hypothetical protein TERM 2287 1743999 - 1743981 - G 74 -6.7 -4.35926 | ATTTCAAATCCAAAA TGGCGGA AATTA TCCACCA AACGTAAACTCTCAT TERM 2288 1744726 - 1744707 - R 80 -6.4 -4.87665 | opp_overlap 1744702 1744699 TCCGAGCCAGAAAAA GCCGAATG TTGC CATCCGAC TTTTGTTGTTAATCT SSU98_1847 1745145 - 1744735 - | ribosome-binding factor A TERM 2289 1744815 - 1744795 - G 79 -11.3 -2.54896 | GCCGTACTCAATTGA TTGGTCTTT TTC AAAGACCAA ATCCGGAATTTTATA TERM 2290 1745132 - 1745117 - G 79 -6.8 -4.5954 | opp_overlap 1745117 TTAGATGATAGAAAA GCTGAG TTTC CCCAGC TTGAATAATCCAAGT infB 1748066 - 1745244 - | translation initiation factor IF-2 TERM 2291 1745993 - 1746007 + g 72 -7.8 -3.90112 | AAACCGCGAAATGGT CGCCAG CCA TTGGCG TTTCGTTCAAACCAG TERM 2292 1747035 - 1747055 + g 100 -4 -6.01725 | gap 1 TTCTGTGACAGGTTT GGC-AGGTT GGTT AGCCTTGCC TTTTTTATTTTTCTT TERM 2293 1747157 - 1747175 + g 79 -3.1 -5.39721 | GTGGACCATCTTCTT CGTCACT ATTAA AGTCACG TTTTTTATCTGGTCG SSU98_1849 1748392 - 1748084 - | hypothetical protein SSU98_1850 1748675 - 1748379 - | nucleic-acid-binding protein implicated in transcription termination nusA 1749834 - 1748692 - | transcription elongation factor NusA SSU98_1852 1750384 - 1749908 - | hypothetical protein TERM 2294 1750536 - 1750517 - R 84 -10 -3.70902 | opp_overlap 1750517 1750516 CCGTGTACAGGGAAA GGGTTGAC TGAC GCCAACCC CTTTTCTCATTATTC TERM 2295 1750822 - 1750796 - R 80 -11 -3.28497 | opp_overlap 1750802, overlap 1750802 GTACGGCAAAGCGAA TTCAAACAATCC AGT GGAGTGTTTGAA CTTAGAAATAAGGAA TERM 2296 1750924 - 1750910 - R 78 -5.7 -5.04601 | opp_overlap 1750910 TCGACAAAGGAAAAA GGTCT CTGTT AGACC TCTCCTCATTTTCCA trmB 1751587 - 1750949 - | tRNA (guanine-N(7))-methyltransferase SSU98_1854 1752378 - 1751584 - | phosphotransferase family protein SSU98_1856 1753468 - 1752428 - | ABC transporter permease SSU98_1855 1753148 - 1752975 - | hypothetical protein SSU98_1857 1753704 - 1753465 - | ABC-type multidrug transport system, ATPase component SSU98_1858 1754200 - 1753691 - | ABC-type multidrug transport system, ATPase component SSU98_1859 1754263 - 1754676 + | diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases SSU98_1860 1754678 - 1754980 + | methyl-accepting chemotaxis protein TERM 2297 1754998 - 1755039 + T 100 -14.1 -3.18292 | opp_overlap 1754998 1755008, overlap 1754999 1755008 TCTGGAATTTCCAAA TATATAAAAATAGAGGTTG AAAA CAACCTCTATTTTTATAGG CTTTTAGTACTCGCT TERM 2298 1755039 - 1754998 - T 90 -11.9 -3.60792 | opp_overlap 1754998 1754999 1755008, overlap 1755008 TCTGGAATTTCCAAA TATATAAAAATAGAGGTTG AAAA CAACCTCTATTTTTATAGG CTTTTAGTACTCGCT TERM 2299 1754999 - 1755038 + T 100 -15.4 -2.50493 | opp_overlap 1754998 1755008, overlap 1754998 1755008 CTGGAATTTCCAAAT ATATAAAAATAGAGGTTG AAAA CAACCTCTATTTTTATAG GCTTTTAGTACTCGC TERM 2300 1755008 - 1755029 + T 100 -11.7 -4.90296 | opp_overlap 1754998 1755008, overlap 1754999 1754998 CCAAATATATAAAAA TAGAGGTTG AAAA CAACCTCTA TTTTTATAGGCTTTT TERM 2301 1755029 - 1755008 - T 100 -11.7 -5.14985 | opp_overlap 1755008 1754999 1754998, overlap 1754998 CCAAATATATAAAAA TAGAGGTTG AAAA CAACCTCTA TTTTTATAGGCTTTT SSU98_1861 1756282 - 1755089 - | transcriptional regulator SSU98_1862 1756806 - 1756279 - | histone acetyltransferase HPA2-like acetyltransferase TERM 2302 1756767 - 1756754 - G 70 -3.8 -4.90918 | opp_overlap 1756757 1756766, overlap 1756755 ATAAAATCAATAAAA GCTG CTGCAT CAGC TGGTTCAGCTTCACT SSU98_1863 1757299 - 1756799 - | ATPase or kinase TERM 2303 1757309 - 1757338 + r 78 -7.9 -4.32177 | opp_overlap 1757314, overlap 1757314 AGACAAGTCGACAGA AAAAATCGCAAGC CAGA GCCTGCGATTTTG TTTATTCTACGCTGA TERM 2304 1757314 - 1757333 + r 93 -7.8 -5.14682 | opp_overlap 1757314, overlap 1757309 AGTCGACAGAAAAAA TCGCAAGC CAGA GCCTGCGA TTTTGTTTATTCTAC TERM 2305 1757333 - 1757314 - R 100 -10 -5.37043 | opp_overlap 1757314 1757309 AGTCGACAGAAAAAA TCGCAAGC CAGA GCCTGCGA TTTTGTTTATTCTAC SSU98_1864 1759004 - 1757340 - | kinase related to dihydroxyacetone kinase SSU98_1865 1759372 - 1759007 - | hypothetical protein TERM 2306 1759478 - 1759516 + H 78 -3.9 -5.40464 | gap 1, opp_overlap 1759467 1759490, overlap 1759500 1759510 1759511 1759514 AACATACTAAGATTA GTAGTGAGGA-AATCTCC GACG GGAGAAAGTACTCACTAC TTTTTCTTTATGATA SSU98_1866 1759565 - 1760470 + | transposase TERM 2307 1760811 - 1760771 - g 100 -14.1 -5.05505 | opp_overlap 1760776 ATGAGAAACGAAAAA GACAATCGCAAACGACTTC AAC GAAGTCGCACACGATTGCC TCCATACATCGTCTC SSU98_1867 1760461 - 1760895 + | transposase TERM 2308 1761094 - 1761077 - T 95 -7.7 -5.38321 | opp_overlap 1761077, overlap 1761070 AAATAGTAGAAAAAA GAGTTCC CAAA GGAACCC TTTTCACAATTAACC SSU98_1868 1762006 - 1761104 - | peptide ABC transporter, permease protein SSU98_1869 1762976 - 1762020 - | ABC-type dipeptide/oligopeptide/nickel transport system, permease component SSU98_1870 1763919 - 1762978 - | ABC-type oligopeptide transport system, ATPase component SSU98_1871 1764920 - 1763922 - | ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component TERM 2309 1765234 - 1765284 + r 100 -17.5 -3.224 | gap 2, opp_overlap 1765243 1765253, overlap 1765243 1765253 ATTATCTGAAAATTC CAATAGCAATCTGAAAAAAGCCAAT CAA ATTGGC-TTTTTCAGATT-CTATTG TCTTCTAACAAATTA TERM 2310 1765276 - 1765243 - R 95 -13.5 -3.38361 | gap 1, opp_overlap 1765243 1765234 1765253, overlap 1765253 AAATTCCAATAGCAA TCTGAAAAAAGCCAAT CAA ATTGGC-TTTTTCAGA TTCTATTGTCTTCTA TERM 2311 1765243 - 1765276 + r 100 -13.5 -3.85527 | gap 1, opp_overlap 1765243 1765253, overlap 1765234 1765253 AAATTCCAATAGCAA TCTGAAAAAAGCCAAT CAA ATTGGC-TTTTTCAGA TTCTATTGTCTTCTA TERM 2312 1765267 - 1765253 - R 100 -8.6 -5.10029 | opp_overlap 1765243 1765234 1765253, overlap 1765243 AGCAATCTGAAAAAA GCCAAT CAA ATTGGC TTTTTCAGATTCTAT TERM 2313 1765253 - 1765267 + r 90 -8.6 -4.69622 | opp_overlap 1765253 1765243, overlap 1765243 1765234 AGCAATCTGAAAAAA GCCAAT CAA ATTGGC TTTTTCAGATTCTAT SSU98_1872 1765632 - 1765297 - | ABC-type dipeptide transport system, periplasmic component SSU98_1873 1767200 - 1765392 - | ABC-type dipeptide transport system, periplasmic component TERM 2314 1766726 - 1766740 + gH 71 -8.6 -3.27212 | overlap 1766725 1766722 ACTTGTAATCCTTAC CAGTCA AGC TGACTG TGATTTTCTTGCCTT TERM 2315 1766970 - 1766987 + gH 72 -6.3 -4.26076 | TTGTTTTACTTCAGC CGGGAAT GACA ATTCCTG TTTTGCTGCACCTGA SSU98_1874 1767293 - 1768540 + | D-alanyl-D-alanine carboxypeptidase TERM 2316 1768574 - 1768546 - T 100 -13.4 -5.77632 | opp_overlap 1768546 AAAATTATAAAAAAA TAGTATGTCGAA CGATT TTCGACATACTA TTTTTTTATTGTAGA TERM 2317 1768546 - 1768574 + T 100 -13.4 -5.88565 | opp_overlap 1768546 AAAATTATAAAAAAA TAGTATGTCGAA CGATT TTCGACATACTA TTTTTTTATTGTAGA TERM 2318 1768725 - 1768702 - T 71 -7.4 -3.97368 | overlap 1768705 TCGTCAATTTATAAA GAAGAGCTAC TGCC GTCGCTCCTC ATCTCCTACTTCAGT SSU98_1875 1770277 - 1768793 - | ABC-type transport system involved in Fe-S cluster assembly, permease component SSU98_1876 1770405 - 1770286 - | hypothetical protein TERM 2319 1770465 - 1770437 - R 89 -11.2 -3.93262 | gap 1 CTTCAAGACACTAAA CTTGGTT-GGAAC TAAA GTTCCTAACCAAG TAACGCAAGGTTCTA SSU98_1877 1770998 - 1770558 - | NifU-like protein involved in Fe-S cluster formation SSU98_1878 1772208 - 1770985 - | selenocysteine lyase SSU98_1879 1773543 - 1772212 - | ABC-type transport system involved in Fe-S cluster assembly, permease component SSU98_1880 1774303 - 1773491 - | ABC-type transport system involved in Fe-S cluster assembly, ATPase component TERM 2320 1774660 - 1774683 + r 89 -8 -4.92757 | opp_overlap 1774662, overlap 1774663 CTAACTTTGAGAAGT GATGCGGGGC TTGA GCCCAGCCTC TTTTCTTGTTAATGA TERM 2321 1774782 - 1774795 + r 77 -8.1 -3.90464 | opp_overlap 1774782, overlap 1774777 ATTATATCAAAAAAA GAGCC TGAC GGCTC TTATCTTGTTTAGAA TERM 2322 1774795 - 1774782 - R 100 -8.1 -5.59357 | opp_overlap 1774782 1774777 ATTATATCAAAAAAA GAGCC TGAC GGCTC TTATCTTGTTTAGAA SSU98_1881 1775989 - 1774817 - | UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase TERM 2323 1775574 - 1775555 - G 70 -7.2 -3.89212 | GAGCCAGACAGGAAA TTGAAGGA AAGG TCCTCCAA AAGGAATCTTAAAGC SSU98_1882 1776723 - 1775986 - | adaptor protein TERM 2324 1776723 - 1776734 + r 70 -3 -5.10029 | overlap 1776724 TAACTACCTCATTCA TTGA TTCA TCAA TTTTTTAAAATTGAT TERM 2325 1776724 - 1776755 + r 73 -6.8 -4.21908 | overlap 1776723 AACTACCTCATTCAT TGATTCATCAATTT TTTA AAATTGATTGATCA TTTTCAATACTCATA TERM 2326 1776833 - 1776820 - R 100 -8.1 -5.2894 | opp_overlap 1776820 AAAGACAAAAGAAAA GCAGG TCTC CCTGC TCTTAAAATAAAAAT SSU98_1883 1777672 - 1776836 - | undecaprenyl pyrophosphate phosphatase TERM 2327 1779098 - 1779114 + GH 72 -9.5 -2.72152 | opp_overlap 1779096, overlap 1779096 1779095 GTTATTCGTAACATC TTACCAG CGA CTGGTAA TGAATTTGTCATCAA SSU98_1884 1777799 - 1779364 + | amino acid ABC transporter, amino acid-binding protein/permease protein SSU98_1885 1779291 - 1780100 + | amino acid ABC transporter ATP-binding protein TERM 2328 1780129 - 1780152 + T 100 -10.4 -5.44119 | opp_overlap 1780126 CATAGAAGACTATTA CTTACCAGTT TCAA AGCTGGTAAG TTTTTTTAGACTAAA TERM 2329 1780193 - 1780173 - T 100 -9.1 -5.90981 | opp_overlap 1780173 TTAGACTAAAAAAAA GAGGAATTC GTA AAATTCCTC TTTTTGGACATCTCT TERM 2330 1780173 - 1780193 + T 88 -8.4 -4.61633 | opp_overlap 1780173 TTAGACTAAAAAAAA GAGGAATT CGTAA AATTCCTC TTTTTGGACATCTCT TERM 2331 1780206 - 1780225 + T 72 -8 -3.70039 | CTCTTTTTGGACATC TCTAAATG AAAC CATTTAGA TTAGTTTTCAAATTT SSU98_1886 1780465 - 1780226 - | hypothetical protein SSU98_1887 1781423 - 1780521 - | membrane protease subunit SSU98_1888 1782683 - 1781433 - | threonine dehydratase TERM 2332 1782541 - 1782555 + g 70 -2.8 -4.98672 | opp_overlap 1782538 1782541, overlap 1782538 1782542 CGAATTTTAAAAGAG CGAACA CGC TGTTCA TTTTCTCTTTTTAAA TERM 2333 1782840 - 1782821 - R 73 -7.1 -4.17491 | opp_overlap 1782812 1782821 ATGAAATGGGCAAAA GAGCCGG AAAAAA CCAGCTC TTTTATTCATTTTCA TERM 2334 1782821 - 1782840 + r 76 -4.9 -4.89562 | opp_overlap 1782821, overlap 1782812 ATGAAATGGGCAAAA GAGCCGG AAAAAA CCAGCTC TTTTATTCATTTTCA TERM 2335 1782885 - 1782871 - R 86 -6.4 -5.14477 | GAGATAGGGAAAAAA GGGAAT GAC ATCCCC TCATCCGCCAACTCA SSU98_1889 1783988 - 1782966 - | ketol-acid reductoisomerase TERM 2336 1783689 - 1783679 - G 73 -8.2 -3.67622 | overlap 1783663 CATGGGCAAAACCAA GGGC ATT GCCC GCTTCCAAGTTTGGA ilvH 1784605 - 1784129 - | acetolactate synthase 3 regulatory subunit SSU98_1891 1786322 - 1784598 - | acetolactate synthase catalytic subunit TERM 2337 1787563 - 1787550 - g 70 -5.3 -4.42806 | opp_overlap 1787559, overlap 1787556 TCATCTTTAAAGAAA GGAAA TCAT TTTCC CATGAAATTGCTTAA SSU98_1892 1786526 - 1787578 + | cell wall biosynthesis glycosyltransferase SSU98_1893 1787565 - 1788503 + | exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase TERM 2338 1788914 - 1788936 + F 81 -8.5 -4.35116 | opp_overlap 1788910 1788913 1788914 CAAATAAATTATAAG GGCACTTAA CATTC TTAGGTGCC TTTTACTGTAGAATA SSU98_1894 1789055 - 1790770 + | dihydroxy-acid dehydratase SSU98_1895 1790821 - 1791216 + | hypothetical protein TERM 2339 1791232 - 1791205 - T 89 -7.8 -5.04385 | opp_overlap 1791200 1791205 GACACGTTTAAAAAA GAGCTGCAGT AAAATAAA ACTGCAACTC TTTTATTTAGGGCTT TERM 2340 1791205 - 1791232 + T 75 -5.6 -4.88405 | opp_overlap 1791205, overlap 1791200 GACACGTTTAAAAAA GAGCTGCAGT AAAATAAA ACTGCAACTC TTTTATTTAGGGCTT SSU98_1896 1791576 - 1791235 - | metal-sulfur cluster biosynthetic protein SSU98_1897 1791888 - 1791667 - | hypothetical protein SSU98_1898 1792141 - 1791866 - | hypothetical protein rpsI 1792825 - 1792433 - | 30S ribosomal protein S9 TERM 2341 1792549 - 1792519 - G 82 -10.4 -3.63515 | CGTCACGTGTAAGAA GACCTGCGCGTTTC AAT GAATCGCGGAAGTC TGGGTCTACTTGAAG TERM 2342 1792709 - 1792726 + g 90 -4.2 -5.69793 | AAGGTCAGCATGTGG GATGTA CTCTTC TACATC TTTTTTGTTTACTGT TERM 2343 1792771 - 1792784 + g 70 -5.2 -4.56597 | opp_overlap 1792771 CTGGGACCAAACGTA CGCG TGCAAC CGCG TTTTTACGACGACCA rplM 1793291 - 1792845 - | 50S ribosomal protein L13 TERM 2344 1793748 - 1793722 - R 82 -6.6 -5.00895 | GTCATCACACAAAAA GGGACACATCTT TAC AAGAAATATCCC TTAGAATCTAGGCTC SSU98_1901 1794619 - 1793756 - | hypothetical protein SSU98_1902 1795137 - 1794616 - | hypothetical protein SSU98_1903 1795866 - 1795138 - | tRNA/rRNA methyltransferase TERM 2345 1795917 - 1795901 - R 100 -8.7 -5.0925 | opp_overlap 1795901 TTTGAAAAGGAAAAA GCCGAGA ATT TCTCAGC TTTCTTAGTTCACAC TERM 2346 1795901 - 1795917 + r 73 -6.5 -4.3255 | opp_overlap 1795901 TTTGAAAAGGAAAAA GCCGAGA ATT TCTCAGC TTTCTTAGTTCACAC SSU98_1904 1796842 - 1795922 - | hypothetical protein SSU98_1905 1797149 - 1796874 - | hypothetical protein TERM 2347 1797015 - 1797029 + g 75 -5.8 -4.63928 | overlap 1797009 CTCATGCTCTTTTGG CAAAAT GTT ATTTTG TTTTTGAAGTGCTAT SSU98_1906 1797335 - 1797724 + | hypothetical protein TERM 2348 1797732 - 1797749 + F 100 -9.9 -5.56263 | opp_overlap 1797730 TTGCATAAGTAATTC CCTCCTA TCCT TAGGAGG TTTTTATTTTATGAT SSU98_1907 1797799 - 1798767 + | hypothetical protein SSU98_1908 1799030 - 1798764 - | hypothetical protein TERM 2349 1799239 - 1799218 - R 100 -10.9 -5.09426 | CTTAACCCCAAAAAA CCGCCAGAT TTTC ATCTAGCGG TCAGGTGTTTTATGA SSU98_1909 1800406 - 1799270 - | ABC-type sugar transport system, ATPase component TERM 2350 1800517 - 1800477 - RH 100 -14.3 -5.10208 | opp_overlap 1800480, overlap 1800480 CAAGGTGAACAAAAA GAACACAATCTTTTGTACA AGT TGCACAAAAGACTGTGTTA CTGAAATAGTTTACT TERM 2351 1800514 - 1800480 - RH 100 -16 -4.63592 | opp_overlap 1800480, overlap 1800477 GGTGAACAAAAAGAA CACAATCTTTTGTACA AGT TGCACAAAAGACTGTG TTACTGAAATAGTTT TERM 2352 1800480 - 1800514 + rH 84 -11.6 -3.17956 | opp_overlap 1800477 1800480 GGTGAACAAAAAGAA CACAATCTTTTGTACA AGT TGCACAAAAGACTGTG TTACTGAAATAGTTT SSU98_1911 1801496 - 1800636 - | regulator of polyketide synthase expression SSU98_1910 1800917 - 1801030 + | hypothetical protein SSU98_1912 1801640 - 1801509 - | response regulator SSU98_1913 1801992 - 1801582 - | response regulator SSU98_1914 1802833 - 1801997 - | response regulator SSU98_1915 1804442 - 1802793 - | sensor histidine kinase, putative SSU98_1916 1805044 - 1804439 - | integral membrane protein TERM 2353 1804545 - 1804531 - G 74 -4.3 -5.00467 | GGAAGAAGAATAAAA TCAAG GGAAG CTTGA ATAGCAAGACCCCAC TERM 2354 1804624 - 1804612 - G 73 -2.6 -5.1963 | TCCAATCAAGAAAAA GCGA GACAG CCGC CAACTGTAAGCCTGT SSU98_1917 1806617 - 1805268 - | transposase TERM 2355 1805352 - 1805392 + g 100 -11.9 -5.05505 | GAGACGATGTATGGA GGCAATCGTGTGCGGCTTC GTT GAAGTCGTTTGCGATTGTC TTTTTCGTTTCTCAT TERM 2356 1805768 - 1805788 + g 77 -6.2 -4.63218 | gap 1, opp_overlap 1805768 TTGTATAGTAACGGA CCTCTTCCA GTAT TGGA-GAGG TTTTCTTGACGGCAC TERM 2357 1806698 - 1806660 - R 78 -3.9 -5.40464 | gap 1, opp_overlap 1806673 1806696, overlap 1806634 1806637 1806636 1806654 TATCATAAAGAAAAA GTAGTGAGTACTTTCTCC CGTC GGAGATT-TCCTCACTAC TAATCTTAGTATGTT TERM 2358 1806770 - 1806746 - R 78 -5.6 -4.95487 | overlap 1806749 AAAATAAATACAAAA GAGGCTGAGC AAAAA GCCCAGCGCC ACTTCTTAGAGTTCG TERM 2359 1806896 - 1806910 + r 75 -8.6 -3.63627 | opp_overlap 1806896 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG TERM 2360 1806910 - 1806896 - R 78 -8.6 -3.66356 | opp_overlap 1806896 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG SSU98_1918 1808541 - 1807060 - | ABC-type sugar transport system, periplasmic component TERM 2361 1808149 - 1808163 + g 79 -7.8 -4.33248 | opp_overlap 1808151 GTCAATAATGTCATA GAGGGC CTT GCCTTC TTTCTTGTAAAGTTC SSU98_1919 1809534 - 1808611 - | ABC transporter membrane spanning permease - sugar transport TERM 2362 1808764 - 1808776 + g 76 -7.7 -4.08394 | opp_overlap 1808757, overlap 1808762 TGAGGACATGGCCGC TGCTG CGG CAGCA TTTTCAGAGAGATAT TERM 2363 1809503 - 1809523 + g 95 -4.8 -5.88471 | opp_overlap 1809503 CTAAATGAATGAATA GAAACAGA AGTGA TTTGTTTC TTTTTTTTCATACTC SSU98_1920 1810476 - 1809544 - | ABC transporter, permease protein TERM 2364 1810668 - 1810649 - R 81 -4.2 -5.25803 | overlap 1810651 AATTTGCATAAAAAA TTGAGCCC TTTC GAGCTCGA GAACTACTAGGTCGT SSU98_1921 1812561 - 1810675 - | glycosyl hydrolase-related protein TERM 2365 1811666 - 1811646 - G 79 -8.3 -4.21319 | AGTAATCCCAATAAA TCAAGGTCA CTC TGTCCTTGA GACGATCCAAATAAG SSU98_1922 1813491 - 1812568 - | transcriptional regulator/sugar kinase SSU98_1923 1816111 - 1813415 - | hypothetical protein TERM 2366 1813996 - 1813983 - GR 70 -3.7 -4.77079 | GATAGACTAATAAAA CTGCG ATGA CGCTG AGGATTGGACGGATT SSU98_1924 1817375 - 1816089 - | hypothetical protein TERM 2367 1817538 - 1817551 + H 70 -5.3 -4.46835 | AATATTGCCAGTTTC GGAAA ACGC TTTCC TTTCTTTCCCATTCT SSU98_1925 1817706 - 1819751 + | putative alpha-1,2-mannosidase TERM 2368 1819805 - 1819766 - T 100 -16.1 -3.87075 | opp_overlap 1819771 1819775, overlap 1819771 1819775 ACCAGCTTCTACAAA CAAAAGAAATAGTCAGG ACCAAG CCTGACTATTTCTTTTA TTCACCTTGCTTTCT TERM 2369 1819800 - 1819771 - T 100 -13.8 -4.99043 | opp_overlap 1819771 1819775, overlap 1819766 1819775 CTTCTACAAACAAAA GAAATAGTCAGG ACCAAG CCTGACTATTTC TTTTATTCACCTTGC TERM 2370 1819771 - 1819800 + T 100 -13.8 -4.68103 | opp_overlap 1819771 1819766 1819775, overlap 1819775 CTTCTACAAACAAAA GAAATAGTCAGG ACCAAG CCTGACTATTTC TTTTATTCACCTTGC TERM 2371 1819796 - 1819775 - T 100 -8.8 -5.00611 | opp_overlap 1819771 1819775, overlap 1819771 1819766 TACAAACAAAAGAAA TAGTCAGG ACCAAG CCTGACTA TTTCTTTTATTCACC TERM 2372 1819775 - 1819796 + T 100 -8.8 -4.87892 | opp_overlap 1819775 1819771 1819766, overlap 1819771 TACAAACAAAAGAAA TAGTCAGG ACCAAG CCTGACTA TTTCTTTTATTCACC SSU98_1926 1824269 - 1819803 - | endo-beta-N-acetylglucosaminidase, putative TERM 2373 1824515 - 1824498 - g 100 -7.7 -5.8901 | opp_overlap 1824498 1824500, overlap 1824486 AGAGAAAACAAAAAA GAGGAAG TTTC CCTCCTC GTTGTCTTCGTTAAT SSU98_1927 1824441 - 1824548 + | hypothetical protein SSU98_1928 1824924 - 1824526 - | hypothetical protein cysS 1826260 - 1824917 - | cysteinyl-tRNA synthetase SSU98_1930 1827223 - 1826450 - | uridine phosphorylase SSU98_1931 1827855 - 1827238 - | Serine acetyltransferase TERM 2374 1827796 - 1827813 + g 80 -2.6 -5.46706 | opp_overlap 1827796, overlap 1827798 AAGGACTTCCAAGGA GTTCCG TGCTGC CGGATC TTTTTCTTTTACAAT TERM 2375 1827900 - 1827877 - R 73 -8.9 -3.35679 | opp_overlap 1827853 1827877 1827882, overlap 1827855 1827882 TCCTTCTAGCGAGAA GACAAGTCC ATTTCG GGACTTGCC TACTTCACCATTATT SSU98_1932 1830286 - 1827911 - | polynucleotide phosphorylase/polyadenylase TERM 2376 1830725 - 1830711 - g 85 -5.7 -5.15969 | opp_overlap 1830710 CTGGAAGCTAAAAAA TTGGG AATTG CCCAA GTCTTAATCACCGCT SSU98_1933 1830333 - 1830860 + | hypothetical protein TERM 2377 1830896 - 1830869 - T 73 -3.5 -5.0916 | gap 1, opp_overlap 1830869 1830868 TTTGTAATATAAAAA CCTCCAA-TGAT ACTAA ATCGTTTGGAGG CTTTTTTAAGTTACC SSU98_1934 1831053 - 1830943 - | hypothetical protein SSU98_1935 1832005 - 1831493 - | hypothetical protein SSU98_1936 1832471 - 1831962 - | phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific TERM 2378 1832273 - 1832283 + gr 95 -5.4 -5.84011 | TAGAATCTCGTGTTA GTTG TTT CAAC TTTTTATTTTTTGTT SSU98_1937 1833425 - 1832610 - | PTS system, sucrose phosphotransferase enzyme II, BC component SSU98_1938 1833780 - 1833391 - | glucokinase regulatory protein SSU98_1939 1834354 - 1833761 - | hypothetical protein TERM 2379 1834641 - 1834599 - g 95 -7.3 -5.58074 | gap 1, overlap 1834601 GAATCAGTAAAAAAA TGGGCTA-TTCTAACTTTAA TAAG TTAAAGATAGAAATAGCCAA ATCGAAATATGATGA TERM 2380 1834639 - 1834601 - g 73 -9.9 -2.94304 | gap 1, overlap 1834599 ATCAGTAAAAAAATG GGCTA-TTCTAACTTTAA TAAG TTAAAGATAGAAATAGCC AAATCGAAATATGAT SSU98_1940 1834430 - 1835257 + | transcriptional regulator TERM 2381 1835383 - 1835352 - T 100 -6.7 -6.12458 | gap 1, opp_overlap 1835352 GAAAAAAACAAAAAA CACAGC-TCAGTAT ACAAG ATACTGGTGCTGTG TTTTTTTGTTTCTAT TERM 2382 1835352 - 1835383 + T 100 -8.9 -6.04953 | gap 1, opp_overlap 1835352 GAAAAAAACAAAAAA CACAGC-TCAGTAT ACAAG ATACTGGTGCTGTG TTTTTTTGTTTCTAT SSU98_1941 1835800 - 1835408 - | ribosomal protein S15 TERM 2383 1835489 - 1835499 + g 78 -2.4 -5.52384 | TGCCAACAAGTTACG ACGG CGA CCGA TTTTTTTCATCAAAC TERM 2384 1835840 - 1835805 - R 73 -10 -2.52464 | gap 1, opp_overlap 1835814, overlap 1835813 1835814 1835816 TTTTTTGTCAACTGA TTTGAAAACTAGCTGAG TAG CTCTGCTA-TTTTCAAA AAAAGCCAGCTTTTG TERM 2385 1835814 - 1835832 + r 73 -7.4 -4.07568 | opp_overlap 1835814 1835813 1835805 1835816 AACTGATTTGAAAAC TAGCTGAG TAG CTCTGCTA TTTTCAAAAAAAGCC TERM 2386 1835860 - 1835845 - R 91 -6.8 -5.42259 | opp_overlap 1835845 1835855 CTATTTTCAAAAAAA GCCAGC TTTT GCTGAC TTTCTGCTTGTATAT SSU98_1942 1837182 - 1835881 - | xanthine/uracil permease SSU98_1943 1837434 - 1837273 - | hypothetical protein TERM 2387 1837554 - 1837537 - R 83 -6.3 -5.0916 | TTTTTAACAGAAAAA GAAGACA ATAT TGCCTTC GTAATATACGTACAT SSU98_1944 1838118 - 1837588 - | hypothetical protein TERM 2388 1837941 - 1837923 - G 82 -6 -4.91712 | CCGAAGTTAGAAAAA GTGATTGG GCA CCAATTAC AATCAAAGAAACATT SSU98_1945 1839227 - 1838499 - | 16S rRNA uridine-516 pseudouridylate synthase family protein SSU98_1946 1839667 - 1839218 - | acetyltransferase TERM 2389 1839525 - 1839515 - G 77 -4.6 -5.06451 | GATGACTGCAAAAAA GCGG TCC CCAC GCGCCTCTGGTGAAA SSU98_1947 1839883 - 1839671 - | acetyltransferase TERM 2390 1839981 - 1839995 + r 77 -10 -3.2614 | opp_overlap 1839976 ACCTATACGACTGAT GCGAAC AGA GTTCGC TTCATCTCCAACCTC TERM 2391 1840014 - 1840028 + r 75 -8.6 -3.63627 | opp_overlap 1840014 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG TERM 2392 1840028 - 1840014 - R 78 -8.6 -3.66356 | opp_overlap 1840014 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG SSU98_1948 1841397 - 1840141 - | major facilitator superfamily permease TERM 2393 1841276 - 1841289 + g 91 -8.1 -4.88388 | opp_overlap 1841259 AGCATGGTGGATAGG GCCAG CAAA CTGGC TTTTTCTAAAATTCT TERM 2394 1841638 - 1841650 + G 71 -9.1 -3.2794 | opp_overlap 1841638 GCTGAAAAAATGAAA CTCCG TGG CGGAG TTGGTCTAGCTGCAC TERM 2395 1841650 - 1841638 - g 93 -9.1 -4.42765 | opp_overlap 1841638 GCTGAAAAAATGAAA CTCCG TGG CGGAG TTGGTCTAGCTGCAC def 1841440 - 1842054 + | peptide deformylase TERM 2396 1842096 - 1842056 - T 100 -14.3 -4.2528 | opp_overlap 1842065 1842082, overlap 1842065 TGGTAATTGAATAAA CATAAGAAACTGACTGAAA AAT TTTCGGTCAGTTTTTTATG TGAGTACGAAAAAAC TERM 2397 1842065 - 1842087 + T 100 -11.4 -5.38047 | opp_overlap 1842056 1842065, overlap 1842082 AATAAACATAAGAAA CTGACTGAAA AAT TTTCGGTCAG TTTTTTATGTGAGTA TERM 2398 1842087 - 1842065 - T 91 -9.2 -4.55908 | opp_overlap 1842065 1842082, overlap 1842056 AATAAACATAAGAAA CTGACTGAAA AAT TTTCGGTCAG TTTTTTATGTGAGTA TERM 2399 1842126 - 1842111 - T 86 -6.8 -5.1861 | opp_overlap 1842082 GTGAGTACGAAAAAA CGACCC TTTC GGATCG ATCTCAATAATAGTC SSU98_1950 1843028 - 1842243 - | putative translation factor (SUA5) TERM 2400 1843054 - 1843074 + r 71 -4.8 -4.62069 | gap 1, overlap 1843058 TCTTTTCTTTTGTTC CATAGCAGA GCGA TCTGCT-TG TTTTCTAATATTTTT TERM 2401 1843058 - 1843071 + r 76 -6.7 -4.37552 | overlap 1843054 TTCTTTTGTTCCATA GCAGA GCGA TCTGC TTGTTTTCTAATATT leuD 1843681 - 1843088 - | isopropylmalate isomerase small subunit TERM 2402 1843274 - 1843306 + g 80 -9.1 -3.94188 | AACCGTGATTTCTTG GTCAGGACCCAGCTG AGC TAGTTGGTCCCTGAC TTCTTTGGGCTGGAT SSU98_1952 1845000 - 1843681 - | 3-isopropylmalate dehydratase large subunit SSU98_1953 1846049 - 1845003 - | 3-isopropylmalate dehydrogenase SSU98_1954 1847620 - 1846058 - | 2-isopropylmalate synthase TERM 2403 1847734 - 1847697 - R 70 -5.7 -4.5032 | gap 1, opp_overlap 1847705, overlap 1847702 TATACTAAGAAGAAA GAAAACACCTCG-AGG ACTATTA CCTGCGAGATGTTGTC AACAGCGCCCGCTTG TERM 2404 1847729 - 1847702 - R 76 -4.2 -5.18297 | gap 1, opp_overlap 1847705, overlap 1847697 TAAGAAGAAAGAAAA CACCTCG-AGG ACTATTA CCTGCGAGATG TTGTCAACAGCGCCC TERM 2405 1847991 - 1847970 - R 100 -8.7 -4.76963 | CCAGATAATAGAAAA CCATGCTCC AATT GAAGCACGG TTCAGGTGTTTAATT SSU98_1955 1848315 - 1848001 - | hypothetical protein TERM 2406 1848281 - 1848260 - G 100 -11.7 -4.42386 | opp_overlap 1848263 TCCTTATTTACAAAA TAAGACTGG TCTC CCAGTCTTA TAGCATTGTTTTTAG TERM 2407 1848263 - 1848278 + g 73 -9 -3.41422 | opp_overlap 1848260 TTATTTACAAAATAA GACTGG TCTC CCAGTC TTATAGCATTGTTTT SSU98_1956 1849534 - 1848293 - | leucyl aminopeptidase (aminopeptidase T) TERM 2408 1849622 - 1849603 - R 100 -8.6 -5.77988 | AGACAGATAAAAAAA CTTCCTGC TGAT ACAGGAAG TTGAAAAGGTTAGCT TERM 2409 1849752 - 1849742 - R 78 -6.8 -4.62302 | opp_overlap 1849741 1849742 GAACAGGCTGAAAAA CTCC ACT GGAG CTTTACACTCACCAC SSU98_1957 1850409 - 1849807 - | hypothetical protein TERM 2410 1850435 - 1850445 + r 78 -5.4 -4.89852 | overlap 1850433 CTTTTCTATTTGTTA CTAC ATA GTAG TTTTTATCACTATAG TERM 2411 1850489 - 1850507 + r 73 -2.4 -5.31877 | TTATTACTAAGTAGT GTCAAATT CCT AGTCTGAC TTTTTTATACTCCGT SSU98_1958 1851319 - 1850645 - | hypothetical protein polC 1855719 - 1851328 - | DNA polymerase III PolC TERM 2412 1855817 - 1855795 - R 100 -9.2 -5.5112 | opp_overlap 1855761 1855794, overlap 1855763 1855762 GTCAGGAAGAAAAAA CTCTCAGG TTCATTT CCTGAGAG ATCTGATTTCTATAG TERM 2413 1855850 - 1855836 - R 73 -7.2 -4.04206 | TGATTTCTATAGAAA TTGGTA GCC TACCAA GCCGCAGCTTCTGTC SSU98_1960 1856833 - 1855844 - | dihydroxyacetone kinase TERM 2414 1856088 - 1856098 + g 73 -5.4 -4.74084 | TAGTCTTCCCCTTCC TTCC AGC GGAA TTTTAATTTTAATTT SSU98_1961 1857389 - 1856844 - | transcriptional regulator TERM 2415 1858250 - 1858223 - g 82 -3.4 -5.50774 | TATAAGAAAGAAAAA CTCCAACCATCT GCTA AATTGGCTGAAG AATTGGTTGAGAAAT SSU98_1962 1857542 - 1858531 + | dihydroxyacetone kinase TERM 2416 1858829 - 1858815 - g 70 -7.1 -3.78953 | ATGGGTATTACTAAA GCCAG TCAAG CTGGC GCTGATTTGGCAGAT SSU98_1963 1858542 - 1859117 + | dihydroxyacetone kinase SSU98_1964 1859114 - 1859488 + | hypothetical protein SSU98_1965 1859498 - 1860208 + | glycerol uptake facilitator and related permease (major Intrinsic protein family) TERM 2417 1860358 - 1860381 + T 81 -5.3 -5.2015 | opp_overlap 1860358 CATTTTATCAACAAA GACTTGGCT ATCATC AACCAAGTC TTTTTCTGTTATTCA TERM 2418 1860381 - 1860358 - T 81 -8.2 -4.25056 | opp_overlap 1860358 CATTTTATCAACAAA GACTTGGCTA TCAT CAACCAAGTC TTTTTCTGTTATTCA SSU98_1966 1862252 - 1860390 - | prolyl-tRNA synthetase TERM 2419 1861205 - 1861218 + g 71 -4.5 -4.66833 | opp_overlap 1861205 1861206, overlap 1861209 CTACATCAAAGAAAT CCGCT GCCA AGTGG TTTTTCAACTTGACA TERM 2420 1862301 - 1862291 - R 73 -5.4 -4.65819 | overlap 1862298 AAAACGAAACGAAAA TAGG AAA CCTA ACGCAGTGCCTTTGG SSU98_1967 1863792 - 1862533 - | membrane-associated Zn-dependent proteases 1 SSU98_1968 1864608 - 1863802 - | CDP-diglyceride synthetase TERM 2421 1863860 - 1863883 + g 81 -11.8 -2.53903 | opp_overlap 1863860, overlap 1863859 1863857 1863877 ATACCGTCAAAACGA TCCAGGATAC CACC GTGTCCTGGA ATAATTTTTCCAGAA TERM 2422 1863883 - 1863860 - G 72 -9.6 -3.09272 | opp_overlap 1863860 1863859 1863857 1863877 ATACCGTCAAAACGA TCCAGGATAC CACC GTGTCCTGGA ATAATTTTTCCAGAA TERM 2423 1864052 - 1864038 - G 74 -5 -4.81852 | overlap 1864047 CGACAATCAAGAAAA TGATAG CAA CTACCA CCGCAGAAAGAATAC SSU98_1969 1865403 - 1864618 - | undecaprenyl pyrophosphate synthase TERM 2424 1865482 - 1865454 - R 83 -9 -4.18506 | gap 1, opp_overlap 1865461, overlap 1865451 1865461 GCAGGGCTAAAACAA GAGAAAACCAAGG TTTC CCTCGGTT-TCTC ATCCTTATTCTTCAA TERM 2425 1865476 - 1865461 - R 80 -6.8 -4.88288 | opp_overlap 1865461, overlap 1865451 1865454 TAAAACAAGAGAAAA CCAAGG TTTC CCTCGG TTTCTCATCCTTATT SSU98_1970 1865810 - 1865487 - | hypothetical protein TERM 2426 1865789 - 1865767 - G 74 -4.8 -4.79373 | overlap 1865771 GAATAGAACATAAAA CCAATCATGG CAA CCATGACAAG TGGCAAAAATAAACC TERM 2427 1865785 - 1865771 - G 75 -8.6 -3.83346 | overlap 1865767 AGAACATAAAACCAA TCATGG CAA CCATGA CAAGTGGCAAAAATA TERM 2428 1865911 - 1865892 - R 100 -8.6 -5.22289 | opp_overlap 1865894 GACCAAACAGAAAAA GACCGAAC TTTC GTTCAGTC TTCGCACACTATTTT SSU98_1971 1867329 - 1865920 - | adenylosuccinate synthase TERM 2429 1866614 - 1866597 - G 73 -7.1 -4.09685 | opp_overlap 1866600, overlap 1866600 GGGCATCGTTCAAAA TAACAGA TGTG TCTGTTA CATACTTTTTGATTT TERM 2430 1867051 - 1867036 - G 70 -7.6 -3.61398 | opp_overlap 1867022, overlap 1867020 1867016 CTTTTCTGGGAAGAA GATTCC TGAC GGAATC AAGTGCAATTTATAC SSU98_1972 1867577 - 1869808 + | bifunctional glutamate--cysteine ligase/glutathione synthetase TERM 2431 1870034 - 1870048 + F 78 -8.6 -3.66356 | opp_overlap 1870034 CCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGAGAT TERM 2432 1870048 - 1870034 - f 75 -8.6 -3.63627 | opp_overlap 1870034 CCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGAGAT TERM 2433 1870081 - 1870067 - f 74 -10 -2.6914 | overlap 1870066 GAGGTTGGAGATAAG GCGAAC TCT GTTCGC ATCAGTCGTAGAGGC TERM 2434 1870453 - 1870482 + F 80 -2.1 -5.60993 | AACAAAATGAATATG GCACCAAGAAA ATCATTTA TATCTCGGTGC TTTTTTTGTGAACCA TERM 2435 1873732 - 1873716 - g 73 -2.9 -5.11836 | ACAGTCAAAAGAAAA TCCTTCC AAA GACAGGA GGAGAAACAAGCTTT SSU98_1973 1870634 - 1873813 + | DNA nuclease TERM 2436 1873822 - 1873850 + F 100 -12.6 -4.93296 | opp_overlap 1873833 ATCCTAATCATTTTT TGAGCTTGAAAG CATGA CTTTCAGGCTCA TTTTTCTACTGCTCC TERM 2437 1874005 - 1873986 - gf 78 -4.2 -5.09204 | overlap 1873988 ACAGCCCAAGAAAAA CACGACAC CATG GCGTCGTC CACCGTTGCTCTAGG TERM 2438 1874003 - 1873988 - gf 71 -6.8 -4.16909 | overlap 1873986 AGCCCAAGAAAAACA CGACAC CATG GCGTCG TCCACCGTTGCTCTA hslO 1873893 - 1874759 + | Hsp33-like chaperonin TERM 2439 1875528 - 1875505 - gT 73 -8.9 -3.36991 | opp_overlap 1875505, overlap 1875503 CACTATCTTGAAACA GGAGAAGTC CTACCC GACCTCTCC TTTGACGACAAACTC SSU98_1975 1874722 - 1875756 + | tRNA-dihydrouridine synthase TERM 2440 1875869 - 1875888 + T 100 -10 -4.7908 | opp_overlap 1875869 TCGACTATATCAAAA CCTCCAGT TTGA GCTGGAGG TTTCTTTATCTTTTT TERM 2441 1875888 - 1875869 - T 91 -9.3 -4.371 | opp_overlap 1875869 TCGACTATATCAAAA CCTCCAG TTTGAG CTGGAGG TTTCTTTATCTTTTT SSU98_1976 1876675 - 1875902 - | hypothetical protein TERM 2442 1876376 - 1876396 + g 89 -7.5 -4.92669 | opp_overlap 1876374 TTGCTCGATATGATT GCGGGGC AAATCCA GTCCCGC TTCTTTTTTTATCTC SSU98_1977 1877489 - 1876668 - | nicotinamide mononucleotide transporter SSU98_1978 1878536 - 1877499 - | transcriptional regulator TERM 2443 1878400 - 1878411 + g 71 -4.4 -4.82901 | opp_overlap 1878385 CCGAGACCAATCTGA TGAC CACG GTCA TTTTTATAGCCCGAC TERM 2444 1878658 - 1878644 - R 100 -10 -4.90525 | opp_overlap 1878644 CAAGCCGAAAGAAAA GCAGGT CTA ACCTGC TTTCACACTATCAAA TERM 2445 1878644 - 1878658 + r 80 -10 -3.59262 | opp_overlap 1878644 CAAGCCGAAAGAAAA GCAGGT CTA ACCTGC TTTCACACTATCAAA SSU98_1979 1881103 - 1878650 - | ATPases with chaperone activity, ATP-binding subunit TERM 2446 1879385 - 1879368 - G 70 -5.6 -4.3586 | TCACTCATATCAAAA CGAATC AAGGCA GATTCG TCATCAAAGAGGATC SSU98_1980 1881567 - 1881109 - | transcriptional regulator CtsR SSU98_1981 1881717 - 1882055 + | putative bacterocin transport accessory protein, Bta SSU98_1982 1882055 - 1882756 + | hypothetical protein TERM 2447 1882784 - 1882763 - T 100 -13.7 -5.16151 | opp_overlap 1882763 GAAATCTAACAAAAA GCACCGACC ACAA GGCCGGTGC TTTTTAAGGAGATTA TERM 2448 1882763 - 1882784 + T 95 -11.5 -4.58283 | opp_overlap 1882763 GAAATCTAACAAAAA GCACCGACC ACAA GGCCGGTGC TTTTTAAGGAGATTA TERM 2449 1882900 - 1882881 - T 100 -8.6 -5.0133 | opp_overlap 1882881 1882884 GATTTTGCCAAAAAA GAACTCCC TTTC GGAAGTTC TTGTGATTTTGAATA tsf 1884059 - 1883019 - | elongation factor Ts TERM 2450 1883059 - 1883078 + g 83 -9.4 -3.93583 | GTCGCTGCAACTTCT GCTTCAAA GTCG TTTGAAGC TTTCTCGATACCTTC TERM 2451 1883248 - 1883269 + g 87 -5.1 -5.42265 | overlap 1883249 1883265 AAGCGATCCATTTTA CCTGGGATG ATTT TATCCCAGA TTTTTTCTGGTTTGC TERM 2452 1883249 - 1883268 + g 75 -8.6 -3.83732 | overlap 1883248 1883265 AGCGATCCATTTTAC CTGGGATG ATTT TATCCCAG ATTTTTTCTGGTTTG TERM 2453 1883600 - 1883617 + g 74 -4.1 -5.00616 | opp_overlap 1883599 TATGTTGGTAAGCAC CAAATGC TTGA GCATCTG TTTTTTCAACCAAAG TERM 2454 1884088 - 1884119 + r 72 -9.4 -2.59484 | gap 1, opp_overlap 1884089, overlap 1884087 1884086 GTTTGTATTTATAAA ATAGAGGAGC-GGGC TCA GCCCTGCCCCTCTAG GATTGTTTTTGTGTC TERM 2455 1884118 - 1884089 - R 100 -15.1 -4.42386 | gap 1, opp_overlap 1884088 1884087 1884086 TTTGTATTTATAAAA TAGAGGAGC-GGGC TCA GCCCTGCCCCTCTA GGATTGTTTTTGTGT SSU98_1984 1885117 - 1884215 - | 30S ribosomal protein S2 TERM 2456 1885262 - 1885294 + r 87 -11.4 -3.50734 | opp_overlap 1885264, overlap 1885258 1885264 TTTCTTAGAAATAGA AAGGAAGTAACGCC TATCT GGTGTTACTTCCTC TTAGTTGTATCCCTT TERM 2457 1885292 - 1885264 - R 95 -11.8 -4.40003 | opp_overlap 1885262 1885258 1885264 TCTTAGAAATAGAAA GGAAGTAACGCC TATCT GGTGTTACTTCC TCTTAGTTGTATCCC TERM 2458 1885264 - 1885292 + r 100 -14 -3.32023 | opp_overlap 1885264, overlap 1885262 1885258 TCTTAGAAATAGAAA GGAAGTAACGCC TATCT GGTGTTACTTCC TCTTAGTTGTATCCC SSU98_1985 1885850 - 1885338 - | hypothetical protein TERM 2459 1885377 - 1885394 + g 70 -2.7 -5.06103 | opp_overlap 1885377, overlap 1885380 ACTCTCATCAATCCA TAGGATG TTTG CATCATA TTTTTTCGCCCTTCT TERM 2460 1885613 - 1885600 - G 74 -6.7 -4.4078 | TTTGCCCAATCAAAA GGGAT ATAG ATCCC TTCAACAATAAGGTT TERM 2461 1886469 - 1886506 + r 86 -10.1 -4.25859 | opp_overlap 1886469 1886479, overlap 1886479 TACCGCCTTTTAATA TTCTAAAAAACCTAGGA ATCT TCCTAGGTTTTTTACTA TTCTTTTCGCTTCAA TERM 2462 1886506 - 1886469 - R 76 -10.1 -3.01924 | opp_overlap 1886469 1886479, overlap 1886479 TACCGCCTTTTAATA TTCTAAAAAACCTAGGA ATCT TCCTAGGTTTTTTACTA TTCTTTTCGCTTCAA TERM 2463 1886479 - 1886496 + r 100 -9.9 -5.31545 | opp_overlap 1886469 1886479, overlap 1886469 TAATATTCTAAAAAA CCTAGGA ATCT TCCTAGG TTTTTTACTATTCTT TERM 2464 1886496 - 1886479 - R 100 -9.9 -5.09173 | opp_overlap 1886479 1886469, overlap 1886469 TAATATTCTAAAAAA CCTAGGA ATCT TCCTAGG TTTTTTACTATTCTT SSU98_1986 1891582 - 1886504 - | subtilisin-like serine protease TERM 2465 1887020 - 1887052 + g 70 -2.9 -5.04356 | gap 2, overlap 1887020 1887046 TTTGACTGTATCCCC GTCTTTCAGACTATG TAGCT CATAG-C-GAAAGGC TTTTTCATTATTTCC TERM 2466 1889607 - 1889596 - G 75 -5.8 -4.63218 | overlap 1889597 TCCGTGGCAATAAAA GTGC GCTG GCAC CCGCCACAATTGGCG TERM 2467 1891713 - 1891696 - R 100 -9.1 -6.4275 | opp_overlap 1891696 CAAAAACAAAAAAAA GCACAGG CTTC CCTGCGC TTTAACAACTTATTA nusG 1892265 - 1891726 - | transcription antitermination protein NusG secE 1892551 - 1892375 - | preprotein translocase subunit SecE SSU98_1989 1894960 - 1892747 - | penicillin-binding protein 2A SSU98_1990 1895113 - 1895271 + | thioredoxin reductase TERM 2468 1895747 - 1895763 + G 83 -10.9 -3.54408 | opp_overlap 1895747, overlap 1895743 GCTTTCTGGGGAAAA TGGCAGA GCT TCTGCCA TTGATTTCGATAAGG TERM 2469 1895763 - 1895747 - g 90 -10.9 -4.07568 | opp_overlap 1895743 1895747 GCTTTCTGGGGAAAA TGGCAGA GCT TCTGCCA TTGATTTCGATAAGG TERM 2470 1896065 - 1896051 - g 70 -2.8 -5.01042 | AATCCAAACGAAAAA GTGC AACCCAA GCAC TCAACCAGCCTATAA SSU98_1991 1895307 - 1896080 + | thioredoxin reductase SSU98_1992 1896082 - 1896948 + | pseudouridylate synthase, 23S RNA-specific TERM 2471 1896933 - 1896968 + T 77 -9.9 -3.19509 | opp_overlap 1896942, overlap 1896934 1896942 GAGTTTTGAAAGAAT AGTAAAAAAGAGCTG AAAAAC CAGCTCTTTTTTGCA TGTATGTTATTCAAA TERM 2472 1896934 - 1896967 + T 87 -13.4 -2.51223 | opp_overlap 1896942, overlap 1896933 1896942 AGTTTTGAAAGAATA GTAAAAAAGAGCTG AAAAAC CAGCTCTTTTTTGC ATGTATGTTATTCAA TERM 2473 1896942 - 1896959 + T 90 -7 -5.14477 | opp_overlap 1896942, overlap 1896934 1896933 AAGAATAGTAAAAAA GAGCTG AAAAAC CAGCTC TTTTTTGCATGTATG TERM 2474 1896959 - 1896942 - T 95 -7.7 -5.31545 | opp_overlap 1896942 1896934 1896933 AAGAATAGTAAAAAA GAGCTGA AAAA CCAGCTC TTTTTTGCATGTATG SSU98_1993 1897517 - 1896975 - | purine operon repressor TERM 2475 1897154 - 1897164 + g 70 -5.4 -4.57569 | TAATCATACCATTGA TGGT GCC ACCA TTTTTCAAGAAGTCA SSU98_1994 1898754 - 1897888 - | aminoglycoside phosphotransferase TERM 2476 1898327 - 1898349 + g 74 -7 -4.35091 | opp_overlap 1898327, overlap 1898328 TTTGGATAGGAATGA CTAGCTGCTT GGT AGGCAGCTAA TTTATTGTCAATCTT TERM 2477 1898328 - 1898348 + g 77 -10.5 -3.1997 | opp_overlap 1898327, overlap 1898327 TTGGATAGGAATGAC TAGCTGCTT GGT AGGCAGCTA ATTTATTGTCAATCT SSU98_1995 1899707 - 1898754 - | HD-superfamily hydrolase SSU98_1996 1900923 - 1899685 - | hypothetical protein TERM 2478 1900855 - 1900839 - G 76 -7.9 -4.09685 | opp_overlap 1900838 1900837 CTTGATCTTGCAAAA GCAGGGC CAA GCTCTGC CATTTTCCATAAAGA SSU98_1997 1901556 - 1900924 - | thiamine pyrophosphokinase SSU98_1998 1902208 - 1901549 - | Pentose-5-phosphate-3-epimerase SSU98_1999 1903098 - 1902223 - | ribosome-associated GTPase TERM 2479 1903266 - 1903294 + r 95 -13.3 -3.12351 | opp_overlap 1903273, overlap 1903273 TCCCACCCCCGCACA GCTCAAACTGTCT GGG AGACAGTTTGAGG TTGGATATAAAGCGA TERM 2480 1903287 - 1903273 - R 75 -8.6 -3.63627 | opp_overlap 1903273 1903266 CCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGATAT TERM 2481 1903273 - 1903287 + r 78 -8.6 -3.67417 | opp_overlap 1903273, overlap 1903266 CCCGCACAGCTCAAA CTGTCT GGG AGACAG TTTGAGGTTGGATAT TERM 2482 1903320 - 1903306 - R 86 -10 -4.0371 | GAGGTTGGATATAAA GCGAAC TTT GTTCGC AACAGTCGTAATGGT TERM 2483 1903588 - 1903620 + r 93 -7.7 -5.12474 | opp_overlap 1903583 1903591, overlap 1903589 GCATGATAAATGGAG AGACCCCAAGTCA AAGTTGA TGACTTGGGGGCA TTTTTATATCTTCTC TERM 2484 1903589 - 1903619 + r 88 -11.2 -3.65858 | opp_overlap 1903583 1903591, overlap 1903588 CATGATAAATGGAGA GACCCCAAGTCA AAGTTGA TGACTTGGGGGC ATTTTTATATCTTCT TERM 2485 1903617 - 1903591 - R 85 -12.4 -2.99546 | opp_overlap 1903589 1903588, overlap 1903583 TGATAAATGGAGAGA CCCCAAGTCA AAGTTGA TGACTTGGGG GCATTTTTATATCTT TERM 2486 1903699 - 1903665 - R 84 -10.1 -3.64947 | opp_overlap 1903676, overlap 1903663 1903668 AAAATCAAAAACAGA CTAGCTCCAAAGGTT TTGGG AACCTTTGGAGGTTG GAAATAGAGCGAACG TERM 2487 1903696 - 1903668 - R 77 -10.4 -2.90234 | opp_overlap 1903676, overlap 1903665 1903663 ATCAAAAACAGACTA GCTCCAAAGGTT TTGGG AACCTTTGGAGG TTGGAAATAGAGCGA TERM 2488 1903709 - 1903721 + r 76 -7.7 -4.05446 | opp_overlap 1903708 1903704 1903709 AGGTTGGAAATAGAG CGAAC GTA GTTCG TTTCTACTTACGCAG TERM 2489 1903830 - 1903773 - R 74 -10 -2.59569 | gap 2, overlap 1903772 1903788 GTTTCAAAGGAACAG GCTGGGAGTGGGAA-A-GAACTCGACCA TTCA TAGAAGAGTTCGTCTTCCCACCCCCCGC ACAGTTGATTAGGTC SSU98_2000 1905572 - 1903995 - | multidrug ABC transporter, ATP-binding protein TERM 2490 1904568 - 1904585 + g 100 -9.9 -4.56597 | CTCAAACGCTACGGT CAGGTCT TCAA AGACCTG TTTTTCACCGACAGC SSU98_2001 1906816 - 1905569 - | metallo cofactor biosynthesis protein TERM 2491 1906468 - 1906455 - G 71 -6.7 -4.08216 | CCAGCTTCCTTAAAA CAGTG TGTA CACTG TAAATGACATTTATT SSU98_2002 1908044 - 1907181 - | transcriptional regulator TERM 2492 1908314 - 1908270 - R 100 -10.1 -4.72729 | overlap 1908271 1908273 1908275 CAACGAAAATCAAAA GTAGACCACCTTCAACTATCT TCC AGATAGTTGAAGGTGGAAAAT ACAAAACAATGTTTG TERM 2493 1908313 - 1908271 - R 100 -13.6 -3.4201 | overlap 1908270 1908273 1908275 AACGAAAATCAAAAG TAGACCACCTTCAACTATCT TCC AGATAGTTGAAGGTGGAAAA TACAAAACAATGTTT TERM 2494 1908311 - 1908273 - R 100 -16.2 -3.25595 | overlap 1908271 1908270 1908275 CGAAAATCAAAAGTA GACCACCTTCAACTATCT TCC AGATAGTTGAAGGTGGAA AATACAAAACAATGT TERM 2495 1908309 - 1908275 - R 100 -23.2 -3.17218 | overlap 1908273 1908271 1908270 AAAATCAAAAGTAGA CCACCTTCAACTATCT TCC AGATAGTTGAAGGTGG AAAATACAAAACAAT TERM 2496 1908525 - 1908504 - R 100 -10.9 -5.42975 | opp_overlap 1908502 1908508 1908518 TCACATAAAGAAAAA CCAAGCCAG CTAT CTGACTTGG TCGTGATTTTATTCT SSU98_2003 1910978 - 1908534 - | phosphoglycerol transferase/alkaline phosphatase superfamily protein SSU98_2004 1912721 - 1910991 - | major facilitator superfamily permease TERM 2497 1912683 - 1912671 - G 100 -4.1 -6.04324 | overlap 1912673 CGAAAAAAGAAAAAA TACAG TTA CTGCA ACAATATCTGGATGC TERM 2498 1912693 - 1912673 - G 71 -4.7 -4.6155 | overlap 1912671 AAAAAAGAAAAAATA CAGTTACTG CAA CAATATCTG GATGCTTTTTCAGTA TERM 2499 1912737 - 1912759 + r 74 -4.8 -4.83169 | opp_overlap 1912742, overlap 1912740 1912742 AAGATACCTTCATAA AAAAAGAGGG AAC CCCTCTCTTG TTTTTGTAAGAACCT TERM 2500 1912740 - 1912756 + r 76 -6.5 -4.52873 | opp_overlap 1912742, overlap 1912737 1912742 ATACCTTCATAAAAA AAGAGGG AAC CCCTCTC TTGTTTTTGTAAGAA TERM 2501 1912742 - 1912754 + r 80 -9.1 -3.86816 | opp_overlap 1912742, overlap 1912740 1912737 ACCTTCATAAAAAAA GAGGG AAC CCCTC TCTTGTTTTTGTAAG TERM 2502 1912754 - 1912742 - R 100 -9.1 -5.61596 | opp_overlap 1912742 1912740 1912737 ACCTTCATAAAAAAA GAGGG AAC CCCTC TCTTGTTTTTGTAAG TERM 2503 1913051 - 1913080 + r 78 -10.9 -2.66274 | opp_overlap 1913051, overlap 1913050 1913053 TTCCATTAAAATAAA TATTGATTGCAGA TTTC TCCGCAATCAATA CTTGCTTATAAACCA TERM 2504 1913080 - 1913051 - R 100 -13.1 -4.72007 | opp_overlap 1913051 1913050 1913053 TTCCATTAAAATAAA TATTGATTGCAGA TTTC TCCGCAATCAATA CTTGCTTATAAACCA ksgA 1913994 - 1913086 - | dimethyladenosine transferase SSU98_2006 1914508 - 1913978 - | hypothetical protein TERM 2505 1914052 - 1914070 + g 91 -4.7 -5.63517 | TGTCCAGCTGTTTTT CTAAATA ATTGG TATTTAG TTTTTTCTTTCGAGC SSU98_2007 1915047 - 1914781 - | antitoxin of toxin-antitoxin stability system TERM 2506 1915115 - 1915090 - R 88 -5.6 -5.74122 | gap 1, opp_overlap 1915090 TAGCATAGAAAAAAA GAGTTGT-CAA ACTTA TTGTACAACTC TTTAACGATTCTCCA SSU98_2008 1915572 - 1915117 - | NTP pyrophosphohydrolase including oxidative damage repair enzymes SSU98_2009 1915923 - 1915579 - | hypothetical protein SSU98_2010 1916185 - 1915898 - | hypothetical protein TERM 2507 1916272 - 1916251 - R 95 -8.1 -5.055 | opp_overlap 1916249 GCAATTTTCAAAAAA GCAGAAATA GTAA TATTTCCGC TCTAGATTGCCTATC SSU98_2011 1916675 - 1916283 - | hypothetical protein SSU98_2012 1917234 - 1916644 - | small primase-like protein SSU98_2013 1917979 - 1917197 - | hypothetical protein TERM 2508 1918068 - 1918045 - R 100 -8.2 -5.89921 | opp_overlap 1918045 1918044 ATGAGAAGAAAAAAA CCAGCAGA CTCGAGTT TCTGCTGG CTTCTCTTTTCATCT rpmH 1918223 - 1918086 - | 50S ribosomal protein L34 TERM 2509 1918375 - 1918387 + r 74 -4.8 -4.7871 | opp_overlap 1918375 AAATCATTGAAAAAA GAGG ACTAG CCTC TTTTTAATCATGATT TERM 2510 1918387 - 1918375 - R 79 -4.8 -5.13521 | opp_overlap 1918375 AAATCATTGAAAAAA GAGG ACTAG CCTC TTTTTAATCATGATT SSU98_2015 1919473 - 1918391 - | RNA-binding protein SSU98_2016 1920218 - 1919406 - | hypothetical protein rnpA 1920603 - 1920202 - | ribonuclease P TERM 2511 1920639 - 1920615 - R 95 -7.9 -5.28315 | opp_overlap 1920615 ACAAAATTCAAAAAA GCCAATAAACA TAC CGTTTATAGGC TTTTTGCGTTCTGAA TERM 2512 1920615 - 1920639 + r 83 -7.2 -4.78149 | opp_overlap 1920615 ACAAAATTCAAAAAA GCCAATAAAC ATACC GTTTATAGGC TTTTTGCGTTCTGAA SSU98_2018 1922026 - 1920632 - | argininosuccinate lyase SSU98_2019 1923233 - 1922040 - | argininosuccinate synthase TERM 2513 1923395 - 1923376 - R 100 -8.6 -5.4477 | opp_overlap 1923376 AAATTTCCAAAAAAA GCTAGAGA ATAT TCTCCAGC TTCTGAAATATATTC SSU98_2020 1923679 - 1923425 - | hypothetical protein TERM 2514 1924014 - 1924041 + r 91 -9.2 -4.48176 | opp_overlap 1924014 1924015, overlap 1924015 GATTATAAAACAAAA CCTTACAGGTGT CAAG ACGCCTGTAAGA TTTATTAATTTTCTA TERM 2515 1924041 - 1924014 - R 100 -9.2 -5.20781 | opp_overlap 1924014 1924015, overlap 1924015 GATTATAAAACAAAA CCTTACAGGTGT CAAG ACGCCTGTAAGA TTTATTAATTTTCTA TERM 2516 1924040 - 1924015 - R 86 -10.5 -3.70842 | opp_overlap 1924014 1924015, overlap 1924014 ATTATAAAACAAAAC CTTACAGGTGT CAAG ACGCCTGTAAG ATTTATTAATTTTCT TERM 2517 1924015 - 1924040 + r 90 -12.7 -3.27279 | opp_overlap 1924015 1924014, overlap 1924014 ATTATAAAACAAAAC CTTACAGGTGT CAAG ACGCCTGTAAG ATTTATTAATTTTCT SSU98_2021 1924576 - 1924046 - | small molecule binding protein TERM 2518 1924665 - 1924643 - R 100 -10.6 -4.74103 | opp_overlap 1924643 TCCTCAACCCAAAAA CGGAAACTGC AGA ACAGTCTCCG TTATCATCTGCTAGT SSU98_2022 1925590 - 1924676 - | hypothetical protein SSU98_2024 1926074 - 1925940 - | hypothetical protein SSU98_2023 1925658 - 1926158 + | NTP pyrophosphohydrolase including oxidative damage repair enzymes TERM 2519 1926174 - 1926205 + Tr 71 -4.2 -4.87133 | opp_overlap 1926177 1926178, overlap 1926175 1926177 1926178 ATTCCCCTAACAGAC AAATCCCCGCCGTC ACAG GACAGCGGGGCTCC TTTTATTTCAAACCT TERM 2520 1926202 - 1926177 - TR 95 -12.5 -4.2074 | opp_overlap 1926175 1926174 1926177 1926178, overlap 1926178 CCCCTAACAGACAAA TCCCCGCCGTC ACAG GACAGCGGGGC TCCTTTTATTTCAAA TERM 2521 1926177 - 1926202 + Tr 80 -10.3 -3.32684 | opp_overlap 1926177 1926178, overlap 1926175 1926174 1926178 CCCCTAACAGACAAA TCCCCGCCGTC ACAG GACAGCGGGGC TCCTTTTATTTCAAA TERM 2522 1926201 - 1926178 - TR 100 -16 -3.11962 | opp_overlap 1926177 1926175 1926174 1926178, overlap 1926177 CCCTAACAGACAAAT CCCCGCCGTC ACAG GACAGCGGGG CTCCTTTTATTTCAA TERM 2523 1926178 - 1926201 + Tr 93 -13.8 -2.58887 | opp_overlap 1926178 1926177, overlap 1926177 1926175 1926174 CCCTAACAGACAAAT CCCCGCCGTC ACAG GACAGCGGGG CTCCTTTTATTTCAA mmuM 1927155 - 1926208 - | homocysteine methyltransferase SSU98_2026 1928544 - 1927168 - | amino acid permease TERM 2524 1927308 - 1927296 - G 70 -5.5 -4.48997 | TAACCAACAAAACAA CCGTA ATC CACGG CAAGGTTGGTGAGAA TERM 2525 1928275 - 1928263 - G 74 -7.7 -3.9712 | CCAGGCCACCATAAA TCCTG TTC CAGGA CTGATAAACTTGGTC TERM 2526 1928647 - 1928672 + r 81 -8.9 -4.0825 | opp_overlap 1928647 TCAAACTATGACAAA TCCCCACCGCC ATAT GACAGTGGGGA TTATTTCATTACAAA TERM 2527 1928672 - 1928647 - R 100 -13.3 -4.04209 | opp_overlap 1928647 TCAAACTATGACAAA TCCCCACCGCC ATAT GACAGTGGGGA TTATTTCATTACAAA gltX 1930186 - 1928681 - | glutamyl-tRNA synthetase TERM 2528 1929007 - 1928995 - G 71 -4.1 -4.86822 | overlap 1929006 AATCAGAGAAGAAAA GGTCT GTC AAACC AACGATTTCATCCGC TERM 2529 1929688 - 1929714 + g 77 -3.7 -5.1861 | gap 2, overlap 1929690 TTGGGACAATGCCAG CCGCCT-CA-CGC TCT GCGATGTAGGCAG TTTTTTCATCCTCAG TERM 2530 1930202 - 1930219 + r 81 -8.5 -4.24338 | opp_overlap 1930202, overlap 1930194 AAGAAAACAGAAAAA TCAGTCT AAAC AGACTGA TTTTGAGGTGTTTTT TERM 2531 1930219 - 1930202 - R 100 -8.5 -5.34632 | opp_overlap 1930202 1930194 AAGAAAACAGAAAAA TCAGTCT AAAC AGACTGA TTTTGAGGTGTTTTT SSU98_2028 1930578 - 1930207 - | putative permease TERM 2532 1930567 - 1930549 - G 74 -9.6 -3.2756 | opp_overlap 1930564 1930566, overlap 1930553 1930554 AACGCCAAGAAGAGA GAAAGTGG CTG CCACTTCC AGCGTCACCATGCTG TERM 2533 1930563 - 1930553 - G 74 -6.8 -4.28067 | overlap 1930549 1930554 CCAAGAAGAGAGAAA GTGG CTG CCAC TTCCAGCGTCACCAT TERM 2534 1930564 - 1930585 + g 70 -5.1 -4.57073 | opp_overlap 1930549 1930554, overlap 1930566 GAAAGTGGCTGCCAC TTCCAGCGT CACC ATGCTGGTA TTTTTGAAAAGGGTA TERM 2535 1930566 - 1930583 + g 72 -7.7 -3.90048 | opp_overlap 1930549 1930554, overlap 1930564 AAGTGGCTGCCACTT CCAGCGT CACC ATGCTGG TATTTTTGAAAAGGG SSU98_2029 1931485 - 1930763 - | lantibiotic efflux protein TERM 2536 1931512 - 1931525 + r 86 -5.3 -5.31275 | TCTTTTGATTAATTT TCAGA ATAT TCTGA TTTTTTGTCCTACAG SSU98_2030 1932236 - 1931577 - | hypothetical protein SSU98_2031 1932729 - 1932241 - | response regulator TERM 2537 1932794 - 1932824 + r 100 -10.5 -5.25699 | opp_overlap 1932798, overlap 1932798 TAGAAATAAACTAAG AAAAGTCCCTTGC ATTAC GCGAGGGACTTTA TTTTTATTATATGAT TERM 2538 1932798 - 1932820 + r 100 -11.3 -5.09221 | opp_overlap 1932798, overlap 1932794 AATAAACTAAGAAAA GTCCCTTGC ATTAC GCGAGGGAC TTTATTTTTATTATA TERM 2539 1932820 - 1932798 - R 100 -9.8 -4.88407 | opp_overlap 1932798 1932794 AATAAACTAAGAAAA GTCCCTTGCA TTA CGCGAGGGAC TTTATTTTTATTATA SSU98_2032 1933623 - 1932865 - | hypothetical protein SSU98_2033 1934325 - 1933831 - | hypothetical protein TERM 2540 1934367 - 1934349 - R 73 -9 -3.40403 | opp_overlap 1934349 CTTGTCTGATGAGAA TTTCTGAA ATT TTCAGAAA TAGGTTAGACCTAGC SSU98_2034 1935816 - 1934449 - | DNA repair protein RadA SSU98_2035 1936356 - 1935823 - | fructose-2,6-bisphosphatase dut 1936806 - 1936363 - | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 2541 1936902 - 1936883 - R 73 -5.6 -4.67641 | opp_overlap 1936883, overlap 1936878 1936885 AGGCTAAAAGCAAAA CTCCAACC TAGT GGCTGGGG TTTTCAACTTTATTC SSU98_2037 1938696 - 1936912 - | ABC-type multidrug transport system, ATPase and permease component TERM 2542 1938505 - 1938488 - G 88 -9.9 -4.10007 | opp_overlap 1938492 1938493, overlap 1938491 ATAACCCCGTTAAAA TCAGCCA TGTC TGGCTGA AAGTCAGCCTGACCA SSU98_2038 1940403 - 1938697 - | putative ABC transporter ATP-binding protein SSU98_2039 1940845 - 1940396 - | transcriptional regulator TERM 2543 1941401 - 1941391 - g 71 -6.8 -4.09864 | ATGCACGCTTCAAAA GGCT TAG AGCC TGATAGTCACAAGCG TERM 2544 1942067 - 1942043 - g 73 -5.7 -4.49958 | ATGCCATCAAAGAAA TCATGACGG GTGAATT CCGACATGA AAATGAATGGCATTG gpsA 1941067 - 1942083 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 2545 1942738 - 1942719 - g 74 -5 -4.77757 | overlap 1942714 1942720 GTGGAAAAACCAAAA CCAGAAGA CGCT CCTTCTGA CCTTGCTATTATCGG TERM 2546 1942813 - 1942803 - g 80 -4.6 -5.1417 | TTAGAAAACCAAAAA CCAG GTG CCGG GAACGAGATTCAATT SSU98_2041 1942128 - 1943027 + | glucose-1-phosphate-uridylyltransferase TERM 2547 1943043 - 1943018 - T 78 -7.7 -4.19927 | opp_overlap 1943018 1943024, overlap 1943024 AAAATTAGATACAAA GAAAAACTAGC AAGC GCTAGTTTTTT CTTATGTCAAATAAA TERM 2548 1943037 - 1943024 - T 93 -6.7 -5.4433 | opp_overlap 1943018 1943024, overlap 1943018 AGATACAAAGAAAAA CTAGC AAGC GCTAG TTTTTTCTTATGTCA TERM 2549 1943024 - 1943037 + T 93 -6.7 -5.60689 | opp_overlap 1943024 1943018, overlap 1943018 AGATACAAAGAAAAA CTAGC AAGC GCTAG TTTTTTCTTATGTCA SSU98_2042 1943527 - 1943045 - | hypothetical protein SSU98_2043 1943883 - 1943689 - | putative 5-formyltetrahydrofolate cyclo-ligase SSU98_2044 1944252 - 1944028 - | 5-formyltetrahydrofolate cyclo-ligase TERM 2550 1944293 - 1944278 - R 100 -9 -4.82901 | opp_overlap 1944276 1944275 1944278, overlap 1944259 1944258 TTCTTTTCAGAAAAA GACTGG AAAA CCAGTC TAGTTTGCTTTCATT TERM 2551 1944278 - 1944293 + r 70 -9 -3.08604 | opp_overlap 1944259 1944258 1944278, overlap 1944276 1944275 TTCTTTTCAGAAAAA GACTGG AAAA CCAGTC TAGTTTGCTTTCATT SSU98_2045 1945420 - 1944293 - | hippurate hydrolase-like protein TERM 2552 1944703 - 1944693 - G 86 -6.8 -5.00616 | GTGCCGTGCAAAAAA GCTG TTT CAGC AATAACATTATTGGT SSU98_2047 1946128 - 1945430 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative SSU98_2046 1945466 - 1946236 + | hypothetical protein SSU98_2048 1946870 - 1946403 - | hypothetical protein SSU98_2049 1947405 - 1946857 - | hypothetical protein TERM 2553 1947491 - 1947456 - R 76 -4.9 -4.98255 | overlap 1947464 TGTCAAGTAGAAAAA CAAAAAAATTAGAAG TTTTAC CTCCTAATTTTCATG TATTATCTTAATCTT TERM 2554 1947483 - 1947464 - R 100 -2.9 -6.23317 | overlap 1947456 AGAAAAACAAAAAAA TTAGAAG TTTTAC CTCCTAA TTTTCATGTATTATC SSU98_2050 1948269 - 1947499 - | Serine/threonine protein phosphatase TERM 2555 1947629 - 1947644 + g 70 -7.6 -3.68351 | ATCCCCATTTTCCCA TCTGGA CTGG TCCAGA TTTGGCTAATGCGGA TERM 2556 1948294 - 1948277 - R 95 -7.7 -5.39681 | opp_overlap 1948277 ATAAGCAAAGAAAAA CTGACCG TTTC CGATCAG TTTGGTTTTCTTACA pgi 1949729 - 1948305 - | glucose-6-phosphate isomerase TERM 2557 1949681 - 1949700 + g 89 -6.6 -5.40474 | opp_overlap 1949681 ATTTATGTACCATAA TATGATAA CGCT TTATCATA TTTTTTTCAAGAAAT SSU98_2052 1950269 - 1949736 - | hypothetical protein TERM 2558 1950407 - 1950382 - R 95 -8.4 -4.94962 | opp_overlap 1950382 ATAAGCCAAAGAAAA CCCTCTGAAA GCCTGA TTTCAAAGGG TTCTTAGATTATACG SSU98_2053 1950975 - 1950550 - | cytosine/adenosine deaminase TERM 2559 1950986 - 1950996 + r 70 -5.4 -4.39002 | ATCACACAACCAATT GGAT TTC ATCC TTTTCTAGCGACTTT SSU98_2054 1951070 - 1950972 - | hypothetical protein TERM 2560 1951233 - 1951212 - R 100 -9.5 -5.36364 | TTAAAAATATAAAAA TACCTCCTC AGTC GAGAAGGTA GGGGGAGCAATATTG TERM 2561 1951341 - 1951310 - R 93 -6.6 -5.4477 | opp_overlap 1951310 1951310 1951318 1951320, overlap 1951298 1951311 1951318 AAATTTTTAAAAAAA TTCAAAAACAGCCT CGAA AGGCTGTATCTGAC ATTTTCTATTACAAT TERM 2562 1951340 - 1951311 - R 85 -10.1 -3.85235 | opp_overlap 1951310 1951310 1951318 1951320, overlap 1951298 1951310 1951318 AATTTTTAAAAAAAT TCAAAAACAGCCT CGAA AGGCTGTATCTGA CATTTTCTATTACAA TERM 2563 1951318 - 1951333 + r 70 -9 -2.95339 | opp_overlap 1951311 1951310 1951318, overlap 1951310 1951310 1951320 AAAAAAATTCAAAAA CAGCCT CGAA AGGCTG TATCTGACATTTTCT TERM 2564 1951333 - 1951318 - R 100 -9 -4.97888 | opp_overlap 1951318 1951310 1951310 1951320, overlap 1951311 1951310 AAAAAAATTCAAAAA CAGCCT CGAA AGGCTG TATCTGACATTTTCT SSU98_2055 1953464 - 1951350 - | transketolase TERM 2565 1953438 - 1953416 - G 79 -7.7 -4.37092 | gap 1, overlap 1953418 ATTGTCCGTAGAAAA GAGGCAGGAC TTTC GTCCCGCC-C TTGGAGTGAACAGTA TERM 2566 1953437 - 1953418 - G 95 -11.4 -3.79419 | overlap 1953416 TGTCCGTAGAAAAGA GGCAGGAC TTTC GTCCCGCC CTTGGAGTGAACAGT SSU98_2056 1954622 - 1953531 - | putative L-ascorbate 6-phosphate lactonase TERM 2567 1954712 - 1954701 - R 74 -4.4 -5.00923 | overlap 1954703 1954706 AAAGACCAAATAAAA CACA GGCT TGTG TTCAAACTTGGACTT SSU98_2057 1954917 - 1954732 - | hypothetical protein SSU98_2058 1955740 - 1954901 - | transcriptional antiterminator SSU98_2059 1956419 - 1955784 - | transcriptional antiterminator SSU98_2060 1957176 - 1956544 - | hypothetical protein araD 1957962 - 1957246 - | L-ribulose-5-phosphate 4-epimerase SSU98_2062 1958825 - 1957962 - | putative L-xylulose 5-phosphate 3-epimerase ulaD 1959493 - 1958831 - | 3-keto-L-gulonate-6-phosphate decarboxylase SSU98_2064 1959989 - 1959504 - | phosphotransferase system mannitol/fructose-specific IIA domain-containing protein TERM 2568 1960041 - 1960019 - R 100 -13.4 -3.84266 | opp_overlap 1960013 1960010 ACACGCTATATGAAA GGGGGAGGGA AAC TCCCTACCCC TAACGGCTATTTATA SSU98_2065 1960330 - 1960052 - | phosphotransferase system, galactitol-specific IIB component SSU98_2066 1961837 - 1960389 - | ascorbate-specific PTS system enzyme IIC TERM 2569 1962079 - 1962051 - R 100 -19.1 -4.4874 | opp_overlap 1962054, overlap 1962073 CCTAAAAATTTAAAA GAAGAGGTTGGTT TGA AACCAACCTCTTC TAGAGGGAAGTGATA TERM 2570 1962054 - 1962076 + r 100 -15 -3.28924 | opp_overlap 1962051 1962073 AAAAATTTAAAAGAA GAGGTTGGTT TGA AACCAACCTC TTCTAGAGGGAAGTG SSU98_2067 1968074 - 1962165 - | Type II secretory pathway, pullulanase PulA and related glycosidases TERM 2571 1962859 - 1962874 + g 70 -7.6 -3.73224 | ACAGCATAGCGGTCC CCATTG CTTG CAATGG TTTGATAGGCAATGA TERM 2572 1964801 - 1964817 + g 71 -4.3 -4.78572 | TATCATTGCCATATT TGAGGGT ATA GCCCGCA TTTTCTTGGTTGAAA SSU98_2068 1968543 - 1968052 - | Type II secretory pathway, pullulanase PulA and related glycosidases TERM 2573 1968673 - 1968652 - R 100 -8.8 -5.53991 | opp_overlap 1968651 1968654 CACTGACCAAAAAAA GAGACTAC TGAGGT GTAGTCTC CCTTTCAATTAAGGT SSU98_2069 1969597 - 1968656 - | transcriptional regulator TERM 2574 1969894 - 1969853 - R 100 -9.7 -5.63517 | opp_overlap 1969853 CCTCTAAACAAAAAA TACTCCAACTGCTAGAC CAATCAAT GTCTAACAATTGAAGTA TCTTTGTCAAATTCT SSU98_2070 1970709 - 1969963 - | putative amino acid ABC transporter, ATP-binding protein TERM 2575 1970667 - 1970686 + g 81 -9.3 -3.82499 | TCCCTTTTAACACCT GCTGACC ACCGAA GGTCAGC TTTACTCCATTTGCT SSU98_2071 1971378 - 1970719 - | ABC-type amino acid transport system, permease component TERM 2576 1971323 - 1971289 - G 95 -11.6 -3.78026 | overlap 1971287 1971320 GCCAAAGGTAAAAGA CAGGATTGTCAGTG GGATAGT CACCAACAATCCTG GAACAAGTATTTGTG SSU98_2072 1972194 - 1971391 - | amino acid ABC transporter periplasmic protein TERM 2577 1972328 - 1972316 - R 88 -4.8 -5.67063 | opp_overlap 1972316 CGGAGCATAAAAAAA GACC TACTC GGTC TTTATATCTCATATT SSU98_2073 1972953 - 1972342 - | surface antigen TERM 2578 1972773 - 1972790 + g 73 -5.5 -4.62471 | overlap 1972775 CCACAATTTTTTCTG CAGCAGC TTTG GCTGCTA TTTTTGCAGCTTCAA TERM 2579 1972775 - 1972788 + g 74 -8.1 -3.92577 | overlap 1972773 ACAATTTTTTCTGCA GCAGC TTTG GCTGC TATTTTTGCAGCTTC TERM 2580 1972918 - 1972929 + g 88 -3 -5.75599 | overlap 1972899 GGCTGTAAACAGTCC CAAT TTGA ATTG TTTTTTTATCATTTG TERM 2581 1973115 - 1973095 - R 100 -9.7 -5.40072 | opp_overlap 1973090 1973095 TTTTTGTCAAAAAAA CGACCTCCA ATA CGGAAGTCG TTTTCTATTTAGTGT TERM 2582 1973095 - 1973115 + r 80 -6.8 -4.83032 | opp_overlap 1973095, overlap 1973090 TTTTTGTCAAAAAAA CGACCTCC AATAC GGAAGTCG TTTTCTATTTAGTGT SSU98_2074 1974637 - 1973285 - | phosphotransferase system cellobiose-specific component IIC SSU98_2075 1975146 - 1974706 - | hypothetical protein SSU98_2076 1975479 - 1975165 - | phosphotransferase system cellobiose-specific component IIA SSU98_2077 1975792 - 1975481 - | phosphotransferase system cellobiose-specific component IIB SSU98_2078 1976623 - 1975805 - | transcriptional antiterminator SSU98_2079 1977798 - 1976620 - | transcriptional antiterminator SSU98_2080 1978999 - 1977890 - | hypothetical protein SSU98_2081 1979815 - 1979006 - | Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase SSU98_2082 1980405 - 1979782 - | Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase SSU98_2083 1981763 - 1980402 - | alpha-galactosidase/6-phospho-beta-glucosidase TERM 2583 1981927 - 1981891 - R 95 -10.3 -4.40804 | opp_overlap 1981894 1981899, overlap 1981899 GATCATTCTAGAAAA TACAAAAACGACCTCCA ATA CGGAAGTCGTTTTCTTA TTATTTACATTTATT TERM 2584 1981894 - 1981924 + r 73 -6.9 -4.13254 | opp_overlap 1981891 1981899, overlap 1981899 CATTCTAGAAAATAC AAAAACGACCTCC AATAC GGAAGTCGTTTTC TTATTATTTACATTT TERM 2585 1981899 - 1981919 + r 82 -6.8 -5.04082 | opp_overlap 1981899 1981891, overlap 1981894 TAGAAAATACAAAAA CGACCTCC AATAC GGAAGTCG TTTTCTTATTATTTA TERM 2586 1981919 - 1981899 - R 100 -9.7 -5.32599 | opp_overlap 1981894 1981899, overlap 1981891 TAGAAAATACAAAAA CGACCTCCA ATA CGGAAGTCG TTTTCTTATTATTTA leuS 1984457 - 1981938 - | leucyl-tRNA synthetase TERM 2587 1984530 - 1984511 - R 100 -8.6 -5.19879 | opp_overlap 1984511 TGGGAAAGACAAAAA CAGCCAGT TTTC ACTAGCTG TTTTCCCATTTTTAC TERM 2588 1984511 - 1984530 + r 73 -6.4 -4.31329 | opp_overlap 1984511 TGGGAAAGACAAAAA CAGCCAGT TTTC ACTAGCTG TTTTCCCATTTTTAC SSU98_2085 1986434 - 1984542 - | metalloendopeptidase TERM 2589 1985430 - 1985441 + g 71 -3 -4.9218 | CACATCGGCCTTGGC TTCT GGTG AGAA TTTTTCTCCTGCATA SSU98_2086 1987365 - 1986490 - | zinc ABC transporter, permease protein TERM 2590 1987238 - 1987218 - GR 74 -6.2 -4.43309 | gap 1 CAATCCCAAGCAAAA CAGAATGCG ATAG CGCAT-CTG CCAGCATTGATTGAT SSU98_2087 1988200 - 1987322 - | Mn2+/Zn2+ ABC transporter permease SSU98_2088 1988945 - 1988175 - | ATP-binding ABC transport protein TERM 2591 1988764 - 1988774 + gr 78 -6.8 -4.56597 | opp_overlap 1988759, overlap 1988760 AGCAAGCGAACCTGC CCTG TGT CAGG TTTTTCCAACCCCAA SSU98_2089 1989780 - 1989499 - | high-affinity zinc uptake system protein znuA precursor SSU98_2090 1990453 - 1989755 - | ABC-type metal ion transport system, periplasmic component/surface adhesin SSU98_2091 1990549 - 1991208 + | putative metal-dependent transcriptional regulator TERM 2592 1991225 - 1991192 - T 86 -6.7 -5.09895 | opp_overlap 1991196, overlap 1991196 TATTCATCGAAAAAA GCAATCGCCCAGCCT AAAC AAGCTGAGCGATTTT TTTTTTTTAAAATAA TERM 2593 1991196 - 1991221 + T 100 -7.5 -6.79027 | opp_overlap 1991196 1991192 CATCGAAAAAAGCAA TCGCCCAGCCT AAAC AAGCTGAGCGA TTTTTTTTTTTTAAA TERM 2594 1991221 - 1991196 - T 93 -11.9 -3.94773 | opp_overlap 1991196, overlap 1991192 CATCGAAAAAAGCAA TCGCCCAGCCT AAAC AAGCTGAGCGA TTTTTTTTTTTTAAA TERM 2595 1991415 - 1991426 + T 90 -3 -6.11644 | CCCAACCCCACCGCA TAAC CCAG GTTA TTTTTTTTTGGATAA SSU98_2092 1992316 - 1991618 - | hypothetical protein SSU98_2093 1993176 - 1992658 - | RevS TERM 2596 1993313 - 1993291 - R 95 -11.4 -4.47397 | ATAAACATAGGAAAA GGTAGTTGCT GGA AACAACTACC CCTTGCAGAACCGTT SSU98_2094 1993545 - 1993354 - | hypothetical protein TERM 2597 1993661 - 1993644 - R 100 -8.4 -5.24989 | opp_overlap 1993642 1993644 TTACACATCAAAAAA CCAGCC TACTTG GGCTGG TCTTCTTGGAGTCGC TERM 2598 1993644 - 1993661 + r 73 -9.1 -3.40611 | opp_overlap 1993644, overlap 1993642 TTACACATCAAAAAA CCAGCCT ACTT GGGCTGG TCTTCTTGGAGTCGC SSU98_2095 1993846 - 1993649 - | hypothetical protein SSU98_2096 1994353 - 1993910 - | D-tyrosyl-tRNA deacylase TERM 2599 1994078 - 1994092 + g 89 -3.5 -5.71712 | opp_overlap 1994078 TGCCGCTCCTGTAAA GGCAG GGCGA TTGCC TTTTTTTGTATCCGC SSU98_2097 1996556 - 1994355 - | GTP pyrophosphokinase TERM 2600 1994690 - 1994676 - G 72 -10 -2.88544 | CTTGAGGTTCATACA GTCCAC ACG GTGGAC CGCTACCCCACGCCC TERM 2601 1998091 - 1998075 - g 73 -5.1 -4.59984 | opp_overlap 1998090, overlap 1998068 1998076 1998089 AAAATCGATACAAAA TCATCTG TAG CAGATGG TCGCATCATCGACCT SSU98_2098 1996812 - 1999253 + | 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein TERM 2602 1999537 - 1999488 - T 90 -3.8 -5.8187 | gap 2, opp_overlap 1999488 1999521 CACTCAATAAAAAAA CACAGATAGACTCAAGCTGATTTT GATG AAATCCAGC-TAAG-CTGTCTGTG TTTTTCTTTTGCTCC TERM 2603 1999488 - 1999537 + T 79 -3.2 -5.50723 | gap 3, opp_overlap 1999488, overlap 1999521 CACTCAATAAAAAAA CACAGATAGACTCAAGCT-GATTTT GAT GAAATCCAGCTA-AG-CTGTCTGTG TTTTTCTTTTGCTCC SSU98_2099 2000599 - 1999775 - | sortase-like protein SSU98_2100 2001453 - 2000596 - | sortase-like protein SSU98_2101 2002318 - 2001431 - | sortase-like protein TERM 2604 2001516 - 2001502 - G 74 -5 -4.89477 | TTGTTAATAAGAAAA TCAGTA AAA TACCGA CAAACATTCCGAGCG TERM 2605 2002562 - 2002530 - R 74 -3.6 -5.0925 | gap 2, opp_overlap 2002524 2002559, overlap 2002524 2002523 2002558 2002559 CTTTAAAACGAAAAA TCCCATTGCCCCAGAT TCA ACCT-GA-CAATGGGA TTTTCCCTCTATTCT TERM 2606 2002623 - 2002589 - R 84 -10.9 -3.54424 | overlap 2002590 TTCTAGTCTGTCAAA CGTTATCGCTTAGTA TAAGT TACCAAGCGATAACC TAGCAAGAAGAGCAA TERM 2607 2002622 - 2002590 - R 95 -14.4 -2.72511 | overlap 2002589 TCTAGTCTGTCAAAC GTTATCGCTTAGTA TAAGT TACCAAGCGATAAC CTAGCAAGAAGAGCA SSU98_2102 2003445 - 2002591 - | hypothetical protein SSU98_2103 2003639 - 2003526 - | hypothetical protein SSU98_2104 2004517 - 2003618 - | hypothetical protein SSU98_2105 2004867 - 2004628 - | hypothetical protein SSU98_2106 2005424 - 2004957 - | hypothetical protein SSU98_2107 2008761 - 2005468 - | cell wall anchor domain-containing protein SSU98_2109 2009562 - 2009077 - | hypothetical protein SSU98_2108 2009538 - 2009630 + | hypothetical protein SSU98_2110 2009914 - 2009603 - | hypothetical protein SSU98_2111 2012175 - 2009917 - | hypothetical protein TERM 2608 2011471 - 2011483 + g 77 -6.3 -4.58283 | opp_overlap 2011470 2011471 TGAGTTCAGCATAAG TCCTT CTA AAGGA TTTTTAGGGGAGTTG TERM 2609 2011745 - 2011761 + g 70 -3.7 -4.85545 | TCCTCAATGCCCTCT TCTTGTT CAG AACTAGA TTTTGTTAATTTGAT TERM 2610 2012968 - 2012942 - R 70 -2.5 -5.09762 | gap 1, overlap 2012946 ACCTTAATATAAAAA TGAC-CATATTT CAAA AAATATGCATCA CACCATATTACATTT TERM 2611 2013013 - 2013024 + r 77 -3 -5.44119 | CTAATGAGTCTAGGA CAAA AAGA TTTG TTTTTTTGAAATACC TERM 2612 2013080 - 2013123 + r 78 -5.4 -4.9725 | opp_overlap 2013080 AAACAAAACAAAAAA CGAACAATACTAGTTTCTAG ATAC CTTAAAACTAATTTTGTTCG TTTTTATATACAAAT TERM 2613 2013123 - 2013080 - R 100 -9.8 -5.95449 | opp_overlap 2013080 AAACAAAACAAAAAA CGAACAATACTAGTTTCTAG ATAC CTTAAAACTAATTTTGTTCG TTTTTATATACAAAT TERM 2614 2013749 - 2013807 + r 74 -7.7 -3.83675 | opp_overlap 2013756, overlap 2013756 TCTACCCTAATCAGC -TATGTAAGGATGAGAAGACGGACTCTAC TAG GAATAGTC-GTCTTCTCATCCTTGCCTGG TTCTTAATTCCATTA TERM 2615 2013756 - 2013799 + r 100 -14.8 -3.16421 | gap 1, opp_overlap 2013756, overlap 2013749 TAATCAGCTATGTAA GGATGAGAAGACGGACTCTAC TAG GAATAGTC-GTCTTCTCATCC TTGCCTGGTTCTTAA TERM 2616 2013799 - 2013756 - R 100 -14.8 -3.0894 | gap 1, opp_overlap 2013756 2013749 TAATCAGCTATGTAA GGATGAGAAGACGGACTCTAC TAG GAATAGTC-GTCTTCTCATCC TTGCCTGGTTCTTAA SSU98_2112 2014014 - 2013892 - | hypothetical protein TERM 2617 2013973 - 2013956 - G 71 -9.9 -2.59569 | opp_overlap 2013969, overlap 2013955 2013949 TGGCCAAACCAAGAT CCTAGCA AACC TGCTAGG GCAATGGCCAAGGTA SSU98_2113 2014776 - 2014018 - | hypothetical protein prmA 2015749 - 2014766 - | ribosomal protein L11 methyltransferase TERM 2618 2015709 - 2015720 + g 71 -4.4 -4.86613 | ATCGTTAATTCTTGC CATG AGTT CATG TTTGTTTTCCTTTTC SSU98_2115 2015958 - 2016080 + | hypothetical protein TERM 2619 2016114 - 2016078 - T 86 -5.4 -5.37043 | gap 2, opp_overlap 2016078 2016081 ATTCGAGATAAAAAA TAACCGTCAGCAAACTTT GAC ACAG-TT-CTGACGGTTA TTTAATCTAACGAAC TERM 2620 2016156 - 2016179 + T 100 -12.5 -5.02287 | TTAGCGGTCCTACTG GGCGTTGAG CTGGAA CTCAACGCC TTTTCTATTTTTATA SSU98_2116 2016594 - 2016241 - | hypothetical protein SSU98_2117 2017066 - 2016596 - | hypothetical protein SSU98_2118 2017403 - 2017068 - | hypothetical protein SSU98_2119 2017473 - 2018759 + | recombination factor protein RarA TERM 2621 2019146 - 2019180 + T 91 -5.9 -5.47821 | gap 1, opp_overlap 2019154, overlap 2019147 2019154 GAGGATTGGTTGATA TGAGGA-AAGTCTTGA TTTA TCAAGGCTTTTTCTCG TTTTTTTGAGTGAAT TERM 2622 2019147 - 2019179 + T 71 -7.2 -3.87608 | gap 1, opp_overlap 2019154, overlap 2019146 2019154 AGGATTGGTTGATAT GAGGA-AAGTCTTGA TTTA TCAAGGCTTTTTCTC GTTTTTTTGAGTGAA TERM 2623 2019154 - 2019171 + T 83 -6.3 -5.14894 | opp_overlap 2019154, overlap 2019147 2019146 GTTGATATGAGGAAA GTCTTGA TTTA TCAAGGC TTTTTCTCGTTTTTT SSU98_2120 2019798 - 2019241 - | organic radical activating protein SSU98_2121 2020512 - 2019985 - | acetyltransferase SSU98_2122 2021827 - 2020481 - | 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases TERM 2624 2021820 - 2021831 + gr 88 -3 -5.80727 | overlap 2021796 ATACTAATATCTGTA TAGT CCAT ACTA TTTTTTCTTGTTTTT SSU98_2123 2021972 - 2021829 - | hypothetical protein TERM 2625 2021927 - 2021937 + g 71 -8.2 -3.49858 | GATAGCGTGTCACCA GGGC CTT GCCC TTATCGTCTAATTGA TERM 2626 2022039 - 2022012 - R 90 -10.7 -4.33417 | opp_overlap 2022012 2022009 TTCATTTATAACAAA CTTCCACAGCT ACCTGG AACTGTGGAAG TCCTATCTTGTTTAT SSU98_2124 2024248 - 2022062 - | anaerobic ribonucleoside triphosphate reductase TERM 2627 2022333 - 2022347 + g 81 -7.2 -4.65916 | opp_overlap 2022330, overlap 2022330 TAGTCCCAAACAGCT TCCAAA GCC TTTGGA TTTTGTTGCAGTACA TERM 2628 2022683 - 2022709 + g 72 -9.4 -3.14211 | TGGGTTGGTCTCCCA TTCGCCACCGTA AAA TACGGTTGCGAC TTCATACAAACCAAT TERM 2629 2022885 - 2022871 - G 78 -10 -3.55444 | opp_overlap 2022883 GCTCCACGCGGTAAA CCAAGG CAT CCTTGG CAATGGCCATACGTT TERM 2630 2024494 - 2024476 - H 78 -10.3 -2.93747 | opp_overlap 2024469, overlap 2024467 2024478 AGCAAACCTCATAGA CAGCCCT CTAAC AGGGCTG GCTCGATGTATTGAA TERM 2631 2024551 - 2024580 + H 90 -7.2 -5.09895 | opp_overlap 2024551 2024555 ATGTCATTAAGGTAA CTAACCTATCAC CGTTTT GTGGTAGGGTAG TTTTTTAGATGGATG TERM 2632 2025571 - 2025540 - g 75 -5.3 -4.82678 | gap 1, opp_overlap 2025538 2025541, overlap 2025542 CCAGAAAAATTAAAA GATCTCTATGCC TACAGATGG GGCATAGAGA-C TAGTTTTCGTGACCT TERM 2633 2025570 - 2025542 - g 80 -9 -4.00742 | opp_overlap 2025541 2025538, overlap 2025540 AGAAAAATTAAAAGA TCTCTATGCC TACAGATGG GGCATAGAGA CTAGTTTTCGTGACC SSU98_2125 2024589 - 2025911 + | transposase TERM 2634 2025966 - 2026004 + T 82 -7.5 -4.47786 | opp_overlap 2025958 2025966 CCCTAAATACAAAAA CTATTCCCGTTTTGTCA TCAAT TGCTCAGACGGGAATAG TTTCTTTAGCTGCTT TERM 2635 2026004 - 2025966 - T 73 -3.1 -5.19879 | opp_overlap 2025966, overlap 2025958 CCCTAAATACAAAAA CTATTCCCGTTTTGTCA TCAAT TGCTCAGACGGGAATAG TTTCTTTAGCTGCTT SSU98_2126 2026687 - 2026298 - | hypothetical protein SSU98_2127 2027127 - 2026684 - | response regulator TERM 2636 2027248 - 2027229 - R 86 -6.4 -5.12707 | CTAAACGGCAAAAAA GCCAGAAC AACT GTCCTGAC TTTCATTGTCTTATA SSU98_2128 2029802 - 2027259 - | mismatch repair ATPase TERM 2637 2029764 - 2029732 - G 87 -5 -5.46698 | CGGAAAAGCAAAAAA GCATCTGGATAC TGTGCTTTT ATATCCAGATAC TGCTGCATTCCCGGA SSU98_2129 2030257 - 2029814 - | arginine repressor argS 2030361 - 2032049 + | arginyl-tRNA synthetase TERM 2638 2032076 - 2032055 - f 81 -8.7 -4.00683 | gap 1, opp_overlap 2032055 2032057 AAAAATGTAATCAAA GCCTTCGGCC ATC AGCCGA-GGC TTTTTTTCTACCACA TERM 2639 2032055 - 2032076 + F 100 -8 -5.60993 | gap 1, opp_overlap 2032055, overlap 2032057 AAAAATGTAATCAAA GCCTTCGGC CATCA GCCGA-GGC TTTTTTTCTACCACA TERM 2640 2032057 - 2032075 + F 77 -8.1 -3.95873 | opp_overlap 2032055, overlap 2032055 AAATGTAATCAAAGC CTTCGGC CATCA GCCGAGG CTTTTTTTCTACCAC TERM 2641 2032262 - 2032280 + G 75 -3 -5.20333 | AGAAAAGGAATCGCC TGTCAGCT TCT AGCCGCCA TTTTTATTGTCGGTA TERM 2642 2032556 - 2032574 + G 86 -10.3 -3.89822 | opp_overlap 2032555 2032554 GCCTGGTGGGAAACT CCCATGC ATGTC GCATGGG TTTCTGCAGTAAATG SSU98_2131 2032181 - 2033143 + | surface antigen TERM 2643 2033188 - 2033168 - T 90 -10.5 -4.31043 | opp_overlap 2033168 ATACAATATTTAAAA GCACAATCT TTT AGACTGTGC TTTTTCATTAAATAT TERM 2644 2033168 - 2033188 + T 95 -8.3 -4.89009 | opp_overlap 2033168 ATACAATATTTAAAA GCACAATCT TTT AGACTGTGC TTTTTCATTAAATAT SSU98_2132 2033750 - 2033196 - | major facilitator superfamily permease SSU98_2133 2033829 - 2034011 + | hypothetical protein TERM 2645 2034015 - 2034048 + T 75 -5.4 -4.81863 | gap 1, opp_overlap 2034016 2034018, overlap 2034018 CAACAGAGATAACAA AGA-CTCCTCTAAGT TAGCT GCTTAGAGGAGTTCA TTTTATTATGACTTT TERM 2646 2034046 - 2034016 - T 86 -8.4 -4.45484 | opp_overlap 2034015 2034018, overlap 2034018 AACAGAGATAACAAA GACTCCTCTAAG TTAGCTG CTTAGAGGAGTT CATTTTATTATGACT TERM 2647 2034044 - 2034018 - T 88 -11 -3.8147 | opp_overlap 2034015 2034018, overlap 2034016 CAGAGATAACAAAGA CTCCTCTAAG TTAGCTG CTTAGAGGAG TTCATTTTATTATGA TERM 2648 2034018 - 2034044 + T 91 -11.7 -3.85542 | opp_overlap 2034018 2034016, overlap 2034015 CAGAGATAACAAAGA CTCCTCTAAGT TAGCT GCTTAGAGGAG TTCATTTTATTATGA SSU98_2134 2035571 - 2034054 - | 4-alpha-glucanotransferase TERM 2649 2034892 - 2034877 - G 70 -5.4 -4.41348 | overlap 2034873 TCCGTTTTAAAGAAA TGTGGA TTAG CCCACA TATCGGCAGAATCAG TERM 2650 2035590 - 2035608 + H 76 -4.5 -5.08086 | TTCTCCTATCTAATC CGCTTGC ACAAC GCAAACG TTTTCTCTTTTTTAT TERM 2651 2036405 - 2036386 - g 74 -9.4 -3.36341 | overlap 2036376 2036375 2036373 2036384 AACACTTGCTAAAGA CAGCAAAT ACGC ATTTGCTG GTGAAGAGGGTAAAA SSU98_2135 2035874 - 2037133 + | ABC transporter substrate-binding protein - maltose/maltodextrin TERM 2652 2037141 - 2037178 + F 76 -9.4 -3.34895 | gap 1, opp_overlap 2037133 2037145, overlap 2037146 2037147 2037149 GCAACTAGTCAAGTT TAAAGTTGGACTGGGAG TTCTC TTCCCAGTCT-ACTTTA TTACTTAACGATAAA TERM 2653 2037147 - 2037173 + F 75 -9.5 -3.19048 | opp_overlap 2037145 2037133, overlap 2037146 2037141 2037149 AGTCAAGTTTAAAGT TGGACTGGGAG TTCTC TTCCCAGTCTA CTTTATTACTTAACG TERM 2654 2037149 - 2037171 + F 77 -9.9 -3.15129 | opp_overlap 2037145 2037133, overlap 2037147 2037146 2037141 TCAAGTTTAAAGTTG GACTGGGAG TTCTC TTCCCAGTC TACTTTATTACTTAA TERM 2655 2037327 - 2037296 - f 80 -2.4 -5.62288 | gap 1, overlap 2037302 GTAATAAAAGAAAAA CTAAAT-GACGATAA CAT CCACCGTCTATTCAG AAGCTATATAAGGAG SSU98_2136 2037346 - 2038641 + | ABC-type sugar transport system, permease component SSU98_2137 2038735 - 2039484 + | ABC-type maltose transport system, permease component TERM 2656 2039467 - 2039496 + F 91 -9.4 -4.4874 | gap 2, opp_overlap 2039466 2039465 TCTGGTTTAACAAGC GGTGGCGACAAGGG ATAA CCCT-GTC-CCACC TTTTCCCTTTTTAGG SSU98_2138 2039544 - 2040326 + | integral membrane protein TERM 2657 2040320 - 2040309 - f 70 -3 -5.07652 | TTTTTCAAAACAAAA TTCA GAGA TGAA ATCTAGGAGGTCTAT SSU98_2139 2040336 - 2041319 + | transcriptional regulator TERM 2658 2042187 - 2042165 - g 77 -6.3 -4.72007 | gap 1, overlap 2042166 GTGGATGAAAATAAA CCCCAAGCTG TTTA CAACT-GGGG CTACGACCCTATGCA SSU98_2140 2041343 - 2043394 + | Type II secretory pathway, pullulanase PulA and related glycosidases TERM 2659 2043474 - 2043494 + T 100 -7.6 -6.02914 | opp_overlap 2043474 ATAATCTCCTTAAAA CTCACTAG TCACT CTGGTGAG TTTTTTTTGTGTGAC TERM 2660 2043540 - 2043518 - T 100 -9.9 -5.52384 | opp_overlap 2043535 GTGTGACCAAAAAAA CAACCCAGC ATAAA GCTGAGTTG AGGCTCTTTACATCA SSU98_2141 2044000 - 2043548 - | ribonucleotide reduction protein TERM 2661 2044068 - 2044024 - R 100 -8.9 -5.18726 | gap 1, opp_overlap 2044024 TCTTTATAATAAAAA CACTACATGTAGACTGTAAA TACTAT TTTACT-CCTACATGTAGTG TTGTCAATCAGTCGC SSU98_2142 2045014 - 2044076 - | hypothetical protein TERM 2662 2044367 - 2044351 - G 74 -6.6 -4.25104 | TTTGTTTCACGAAAA TCGCAT CTGTC ATGCGA CTGGAGATAAACAGC TERM 2663 2044895 - 2044873 - G 73 -9.9 -3.00923 | opp_overlap 2044869 CTGCAATACTAGATA GGAGTCCAT AAATA ATGGACCCC GATATCCGTTCAGCA aspS 2046752 - 2045001 - | aspartyl-tRNA synthetase TERM 2664 2046020 - 2046037 + g 71 -8.5 -3.57263 | TGTCTTGGATTTCAA CCTCATT CAAG AATGAGG TTTCCAAGTCAACCT TERM 2665 2046237 - 2046253 + g 76 -9.5 -3.45839 | overlap 2046227 2046231 GCGCGCACCTTCTGG TGTTGAC TTG GTCAACA TTGGTGTTTCCACAT TERM 2666 2046858 - 2046841 - R 76 -4.8 -4.93595 | opp_overlap 2046841 AGAAAAATCGAAAAA CCAGCC CTAGTT GACTGG TTTACTATATAACAT SSU98_2144 2047299 - 2046847 - | acyltransferase SSU98_2145 2048220 - 2047309 - | oxidoreductase TERM 2667 2048287 - 2048272 - R 81 -5.4 -5.16133 | opp_overlap 2048272 ATTATAACAGAAAAA CTCAGC CGAA ACTGAG TTTTAGTTAAAACCA SSU98_2146 2049324 - 2048290 - | cell wall biosynthesis glycosyltransferase SSU98_2147 2051750 - 2049348 - | glucocerebrosidase TERM 2668 2051880 - 2051857 - R 100 -8.9 -5.24531 | opp_overlap 2051876, overlap 2051875 ATCTGCTATAAAAAA TCTCCCCAG AAAATA CTAGGGAGA TCGCTCCTATTACTT TERM 2669 2051971 - 2051983 + r 76 -7.7 -4.12532 | opp_overlap 2051971, overlap 2051966 AGGTGGGAGATAGGA CGAAC CTA GTTCG TTTCTATATGAGCAG SSU98_2148 2052609 - 2052109 - | hypothetical protein TERM 2670 2052493 - 2052479 - G 72 -7.2 -4.00532 | GCTGTAAAGAGGAAA TTGGTT GAC AACCAA AGGACGCAGAAGTTT TERM 2671 2052597 - 2052635 + g 81 -7.5 -4.74161 | gap 1, opp_overlap 2052607 2052610, overlap 2052601 2052607 2052610 CTTTCATACGGTCTC CTATGCAAGACAAGGGGG AAAT CCCCCTTGTTATGC-TAC TTCTTTTTCTTCTTT TERM 2672 2052601 - 2052632 + g 100 -15.2 -3.23415 | opp_overlap 2052607 2052610, overlap 2052597 2052607 2052610 CATACGGTCTCCTAT GCAAGACAAGGGGG AAAT CCCCCTTGTTATGC TACTTCTTTTTCTTC TERM 2673 2052607 - 2052626 + g 100 -13.6 -3.50358 | opp_overlap 2052607 2052610, overlap 2052601 2052597 2052610 GTCTCCTATGCAAGA CAAGGGGG AAAT CCCCCTTG TTATGCTACTTCTTT TERM 2674 2052626 - 2052607 - G 100 -13.6 -3.08679 | opp_overlap 2052601 2052597 2052607 2052610, overlap 2052610 GTCTCCTATGCAAGA CAAGGGGG AAAT CCCCCTTG TTATGCTACTTCTTT TERM 2675 2052610 - 2052623 + r 83 -9.5 -3.86935 | opp_overlap 2052607 2052610, overlap 2052607 2052601 2052597 TCCTATGCAAGACAA GGGGG AAAT CCCCC TTGTTATGCTACTTC TERM 2676 2052623 - 2052610 - R 81 -9.5 -3.68988 | opp_overlap 2052610 2052607 2052601 2052597, overlap 2052607 TCCTATGCAAGACAA GGGGG AAAT CCCCC TTGTTATGCTACTTC SSU98_2149 2055536 - 2052627 - | beta-glucosidase TERM 2677 2054396 - 2054407 + g 85 -5.8 -5.1675 | overlap 2054399 TTTGTGGTTCTTTTG CTCC CCAT GGAG TTTTTTCATAGGTGA TERM 2678 2054894 - 2054912 + g 73 -6 -4.52873 | overlap 2054892 2054911 AATCTCCACCATTGA GGGAGAAA ATA TTTGTCCC TTCTTTTTCTGGAAG TERM 2679 2055559 - 2055574 + H 84 -4.7 -5.42605 | CCTCCTAAACATTTC GGCTT TCATGT AAGCC TTTTCTTTTTCTTGA SSU98_2150 2055775 - 2056272 + | response regulator SSU98_2151 2056308 - 2056487 + | hypothetical protein TERM 2680 2056966 - 2056978 + G 75 -9.1 -3.65828 | TGAGCAGCGAGATGT GACGG TAG CCGTC TTTACAACTTTATCT SSU98_2152 2056484 - 2057791 + | two-component sensor histidine kinase TERM 2681 2057792 - 2057819 + T 86 -9.2 -4.25347 | opp_overlap 2057797, overlap 2057797 CCTTTACAAGTATAG AAAAATCCCGCT TGAA GGCGGGATTTTC TTTCTATTCATCATT TERM 2682 2057814 - 2057797 - T 95 -8.4 -5.05079 | opp_overlap 2057792 2057797 ACAAGTATAGAAAAA TCCCGC TTGAAG GCGGGA TTTTCTTTCTATTCA TERM 2683 2057797 - 2057814 + T 100 -9.1 -5.10033 | opp_overlap 2057797, overlap 2057792 ACAAGTATAGAAAAA TCCCGCT TGAA GGCGGGA TTTTCTTTCTATTCA SSU98_2153 2059176 - 2057830 - | phosphohydrolase TERM 2684 2058548 - 2058558 + g 71 -6.8 -4.18494 | opp_overlap 2058538 ATACATCCATTGGTT GGAG GAG CTCC TTTTCCGTAGCCGTC TERM 2685 2058708 - 2058690 - G 73 -8.8 -3.5511 | overlap 2058688 CGTGATTGACAAATA GCTCTGCA AAT TGCTGAGC AGTGACCTGATCCGT TERM 2686 2059248 - 2059220 - R 83 -6 -5.20333 | opp_overlap 2059220 GAGGGACAAGAAAAA GAAGCTCGAC CTTCTTTCT GCCGAGCCTC TTATGTCTACAATTT SSU98_2154 2060791 - 2059262 - | fumarate reductase flavoprotein subunit TERM 2687 2060898 - 2060877 - R 88 -3.1 -5.85737 | opp_overlap 2060877 ACATGAACAAAAAAA TGTATGA TATCCGCT TCATACA TTCTTAAAACTATTT SSU98_2155 2061361 - 2060912 - | Thiol-disulfide isomerase and thioredoxin TERM 2688 2061404 - 2061388 - R 79 -5.1 -5.1104 | opp_overlap 2061388 AAATACAGACAAAAA GCCCT TGTAAAT AGGGC TTTTAAAATATCGAT rpsD 2062038 - 2061427 - | 30S ribosomal protein S4 TERM 2689 2062334 - 2062321 - R 95 -4.5 -6.00086 | opp_overlap 2062321 ATAGCACAAAAAAAA GGCTC TGTA AAGCC TTATATAGCGATTAA SSU98_2157 2062597 - 2062346 - | hypothetical protein SSU98_2158 2063956 - 2062601 - | replicative DNA helicase rplI 2064461 - 2063988 - | 50S ribosomal protein L9 SSU98_2160 2066415 - 2064451 - | signaling protein TERM 2690 2066352 - 2066332 - G 80 -4.7 -5.10029 | overlap 2066334 ACCAATTGGAAAAAA TCGGTGG ACAAGAG CCACCAA CCCAAATAAAATGAC SSU98_2161 2068435 - 2066519 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 2691 2066571 - 2066551 - G 75 -8.3 -3.87994 | ATTTATTTTTAGAAA TGGAACGAC TGC GTCCTTCCA AGTAGACCATGAGAA TERM 2692 2066912 - 2066944 + g 74 -4.2 -4.95957 | gap 2, opp_overlap 2066895, overlap 2066911 2066925 2066938 CTTGGCAGTCAGAGC GTC-T-GTCAAGGGCT TGA AGCCCATGGCTACGAC TTTTTCGTTGGTTTC SSU98_2162 2068839 - 2068432 - | NTP pyrophosphohydrolase including oxidative damage repair enzymes SSU98_2164 2069314 - 2068883 - | MutT/NudX family protein (putative) SSU98_2163 2068864 - 2068959 + | hypothetical protein SSU98_2165 2069855 - 2069331 - | hypothetical protein TERM 2693 2069459 - 2069438 - G 81 -9.5 -3.75517 | opp_overlap 2069438 2069437, overlap 2069434 AGTCCACAAAAGCAA TCCATTCAC ACTG GCGAATGGA ATTTCCTTCTTCCAG SSU98_2166 2070251 - 2069925 - | transcriptional regulatory protein SSU98_2167 2070344 - 2070766 + | ketosteroid isomerase-like protein TERM 2694 2070770 - 2070801 + T 100 -13.2 -4.89009 | opp_overlap 2070773, overlap 2070773 TTCTGGGGATAAGAT AAATAGCTTAGCAC GAGA GTGCTAAGCTATTA TTTTTGATTAAATAT TERM 2695 2070773 - 2070798 + T 100 -14.9 -4.53777 | opp_overlap 2070773, overlap 2070770 TGGGGATAAGATAAA TAGCTTAGCAC GAGA GTGCTAAGCTA TTATTTTTGATTAAA TERM 2696 2070798 - 2070773 - T 100 -14.9 -4.27117 | opp_overlap 2070773 2070770 TGGGGATAAGATAAA TAGCTTAGCAC GAGA GTGCTAAGCTA TTATTTTTGATTAAA trmU 2072080 - 2070809 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2697 2070965 - 2070982 + g 71 -9.9 -2.72344 | overlap 2070967 GTCACCTTTTACCTT GACAGTC ACTT GACTGTC TGGTTGACGGTAGCG SSU98_2169 2072136 - 2072819 + | L-serine deaminase TERM 2698 2072972 - 2072956 - g 70 -9.5 -2.86828 | opp_overlap 2072955 2072956, overlap 2072946 2072944 AAATATTGACAATTA TGTCAAG AAA CTTGACA GTTATGAAAGCCTCC SSU98_2170 2072832 - 2073704 + | L-serine deaminase TERM 2699 2073718 - 2073744 + T 77 -8.1 -3.84808 | opp_overlap 2073718 2073724, overlap 2073724 GACAATAATGTAAAC CAAAAAGGACC CTAAC GGTCCTTTTTC TTATTATGGCTTCGG TERM 2700 2073724 - 2073738 + T 95 -7.1 -5.34365 | opp_overlap 2073718 2073724, overlap 2073718 AATGTAAACCAAAAA GGACC CTAAC GGTCC TTTTTCTTATTATGG TERM 2701 2073738 - 2073724 - T 85 -7.1 -5.01042 | opp_overlap 2073724 2073718, overlap 2073718 AATGTAAACCAAAAA GGACC CTAAC GGTCC TTTTTCTTATTATGG TERM 2702 2073883 - 2073899 + T 84 -10.9 -3.63895 | opp_overlap 2073883 TAAAGGAGGAGTAAA CTAGTCC AGT GGACTAG TTTAGCATGGTTAAA TERM 2703 2073899 - 2073883 - T 89 -10.9 -3.83102 | opp_overlap 2073883 TAAAGGAGGAGTAAA CTAGTCC AGT GGACTAG TTTAGCATGGTTAAA TERM 2704 2074121 - 2074151 + T 77 -9.8 -3.12253 | opp_overlap 2074121 2074127, overlap 2074118 2074124 2074126 2074127 TACATTCGTGAGACA GAAAAAGTCTAGCA TCG TGCTAGACCTCTTC TAATTTATCTTAGTA TERM 2705 2074151 - 2074121 - T 100 -14.2 -2.88249 | opp_overlap 2074118 2074121 2074124 2074126 2074127, overlap 2074127 TACATTCGTGAGACA GAAAAAGTCTAGCA TCG TGCTAGACCTCTTC TAATTTATCTTAGTA TERM 2706 2074126 - 2074146 + T 70 -8.3 -3.405 | opp_overlap 2074121 2074127, overlap 2074124 2074121 2074118 2074127 TCGTGAGACAGAAAA AGTCTAGCA TCG TGCTAGACC TCTTCTAATTTATCT TERM 2707 2074127 - 2074145 + T 81 -11.8 -2.63215 | opp_overlap 2074121 2074127, overlap 2074126 2074124 2074121 2074118 CGTGAGACAGAAAAA GTCTAGCA TCG TGCTAGAC CTCTTCTAATTTATC TERM 2708 2074145 - 2074127 - T 100 -11.8 -5.03994 | opp_overlap 2074127 2074126 2074124 2074121 2074118, overlap 2074121 CGTGAGACAGAAAAA GTCTAGCA TCG TGCTAGAC CTCTTCTAATTTATC SSU98_2171 2074739 - 2074161 - | LysM repeat-containing protein TERM 2709 2074662 - 2074652 - G 71 -6.8 -4.18494 | CACCCGCAGTTAAAA GGGA GAT TCCC GCTACCAAACCAGCA TERM 2710 2074838 - 2074825 - R 91 -6.7 -5.25699 | opp_overlap 2074825, overlap 2074819 ATTAGACAATAAAAA CGCTA TTTC TAGCG TTTTTTACTTATTTT TERM 2711 2074825 - 2074838 + r 93 -6.7 -5.43514 | opp_overlap 2074825 2074819 ATTAGACAATAAAAA CGCTA TTTC TAGCG TTTTTTACTTATTTT SSU98_2172 2075641 - 2074847 - | ABC-type cobalt transport system, permease component CbiQ and related transporters SSU98_2173 2076476 - 2075634 - | cobalt transporter ATP-binding subunit SSU98_2174 2077288 - 2076452 - | cobalt transporter ATP-binding subunit SSU98_2175 2077824 - 2077285 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 2712 2077779 - 2077767 - G 75 -3.4 -5.2015 | GTAACAAGATAAAAA TTGG AATTA CCAA AATCCTACCTATCGT SSU98_2176 2078691 - 2077834 - | hypothetical protein SSU98_2177 2080056 - 2078773 - | Zn-dependent peptidase SSU98_2178 2081306 - 2080053 - | Zn-dependent peptidase TERM 2713 2080896 - 2080870 - G 71 -3 -4.95155 | opp_overlap 2080862, overlap 2080873 TCTACATGATAAAAA TTATCTTCTATC TCT GACTGAAGAAAA TTGATTAAATTCGTT TERM 2714 2081541 - 2081531 - g 89 -6.8 -5.41143 | opp_overlap 2081530 GACGCGGTAAAAAAA TCCG TGT CGGA GATGTTATCACACTC SSU98_2179 2081380 - 2081763 + | hypothetical protein TERM 2715 2081817 - 2081846 + G 73 -5.8 -4.56597 | AATTACAACCAATTA GATATTGAGTTC CACAAA GGGCTCAATGTC TTTTTAGGCGAAAAC recF 2081766 - 2082860 + | recombination protein F TERM 2716 2082920 - 2082903 - T 79 -7 -4.47686 | opp_overlap 2082905, overlap 2082906 TTACAAAAAAGTAAA GACCCT GTCAAG AGGGTC TTGCAGAACGTAGAC TERM 2717 2082993 - 2083028 + T 95 -4.8 -6.09196 | TAGCAAGTTATTAAA CTCTTAGAAATATTGA TATT TCGGCGTTTCTGAGAG TTTTTTTATTTTCAA TERM 2718 2083097 - 2083058 - T 100 -13.2 -6.04953 | gap 1, opp_overlap 2083072 ATATAAAGAAAAAAA GATTGAAGAAAATTGTCCA AAA TGGACT-TTTTCTTCAATC TGAAAGACCCTGCCA TERM 2719 2083072 - 2083084 + T 93 -7.7 -5.12068 | opp_overlap 2083058 AGATTGAAGAAAATT GTCCA AAA TGGAC TTTTTCTTCAATCTG TERM 2720 2083103 - 2083120 + T 83 -7 -4.80077 | opp_overlap 2083103, overlap 2083111 TTCTTCAATCTGAAA GACCCT GCCAAG AGGGTC TTGTTTTTGTTTTAC TERM 2721 2083111 - 2083123 + T 91 -6.3 -5.50723 | opp_overlap 2083103, overlap 2083103 TCTGAAAGACCCTGC CAAGA GGG TCTTG TTTTTGTTTTACTGA SSU98_2181 2084613 - 2083132 - | inositol-5-monophosphate dehydrogenase TERM 2722 2084641 - 2084654 + r 70 -5.3 -4.50859 | TTCTTATTTAATATG TAGCA TGAT TGCTA TTTGTATTTTAATTA SSU98_2182 2085936 - 2084845 - | tryptophanyl-tRNA synthetase II TERM 2723 2085925 - 2085898 - G 100 -17 -4.84311 | TTTTACATAATAAAA GCCCACGCACAG AAAA CTGTGCGAGGGC GTCAAGGACACGGTG SSU98_2183 2086052 - 2086228 + | hypothetical protein SSU98_2184 2086225 - 2087097 + | hypothetical protein SSU98_2185 2087102 - 2088784 + | ABC transporter ATPase TERM 2724 2088789 - 2088817 + TF 80 -10.3 -3.33737 | opp_overlap 2088791, overlap 2088791 2088815 GGAAAGCATAATAAA AAGAGGCTGGG ACTTTTG CCCAGCCTCTC TTCTCAGAGTTCGTG TERM 2725 2088791 - 2088815 + TF 90 -12.9 -3.23447 | opp_overlap 2088791, overlap 2088789 AAAGCATAATAAAAA GAGGCTGGG ACTTTTG CCCAGCCTC TCTTCTCAGAGTTCG TERM 2726 2088815 - 2088791 - Tf 100 -12.9 -5.25772 | opp_overlap 2088791 2088789 AAAGCATAATAAAAA GAGGCTGGG ACTTTTG CCCAGCCTC TCTTCTCAGAGTTCG TERM 2727 2088908 - 2088922 + TF 74 -10 -2.6914 | overlap 2088907 GCCATTACGACTGTT GCGAAC AAA GTTCGC CTTATCTCCAACCTC TERM 2728 2088955 - 2088941 - Tf 78 -8.6 -3.66356 | opp_overlap 2088941 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG TERM 2729 2088941 - 2088955 + TF 75 -8.6 -3.63627 | opp_overlap 2088941 ATCTCCAACCTCAAA CTGTCT CCC AGACAG TTTGAGCTGTGCGGG SSU98_2187 2089119 - 2089009 - | hypothetical protein TERM 2730 2089858 - 2089848 - gR 73 -5.4 -4.66163 | ACTTGGATTTAAAAA CTCA TGG TGAG ACATTTACAAAAATT TERM 2731 2091172 - 2091155 - gR 100 -4.1 -5.98781 | GAGAATCAAAAAAAA GTTGTCA TTAC TGTCAAC AATCAGTCAAGTGAG SSU98_2186 2089091 - 2091670 + | hypothetical protein TERM 2732 2091658 - 2091680 + Tr 88 -4.9 -5.55769 | opp_overlap 2091658, overlap 2091679 CTATTATTCTAAGAA CCGAGAA TACTAAACT TTCTCGG TTTTTTCTTGTAAAA TERM 2733 2091705 - 2091720 + Tr 74 -7.6 -3.91689 | opp_overlap 2091705, overlap 2091679 GTAAAAAACAAAAAA CCTTGA TTTC TCAAGG TTTCCTATGCTTTAT TERM 2734 2091720 - 2091705 - TR 100 -7.6 -6.04324 | opp_overlap 2091679 2091705 GTAAAAAACAAAAAA CCTTGA TTTC TCAAGG TTTCCTATGCTTTAT TERM 2735 2092078 - 2092096 + Tr 100 -8.9 -5.46657 | TGCTGGAATCATTTA GACCTAC CTCGA GTAGGTC TTTTTTCTTGCCATA SSU98_2188 2092772 - 2092071 - | hypothetical protein SSU98_2189 2092928 - 2092779 - | hypothetical protein TERM 2736 2093351 - 2093335 - H 78 -6.7 -4.5954 | GCATACGACAGAAAA TGATTTT TAG AAAATCA GGATTATGGCTTACA TERM 2737 2093393 - 2093407 + H 83 -8.6 -4.32046 | TAATTCACAGAGTTT TCCACA GGT TGTGGA TTTGATTTTTGAAAA SSU98_2190 2093505 - 2094671 + | trypsin-like serine protease TERM 2738 2094707 - 2094680 - f 100 -14.4 -4.02253 | opp_overlap 2094680 CGAATAATTGACAAA TGAGACTTTACA CAAT TGTAAAGTCTCA TTTTTTTTGCTAGAA TERM 2739 2094680 - 2094707 + F 100 -14.4 -5.86061 | opp_overlap 2094680 CGAATAATTGACAAA TGAGACTTTACA CAAT TGTAAAGTCTCA TTTTTTTTGCTAGAA SSU98_2191 2094732 - 2095496 + | transcriptional regulator