TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.598988 %AT, 1459718 nt, 10024 terms. Intergenic: 0.652786 %AT, H2T: 317901 nt, 2183 terms; T2T: 47527 nt, 1127 terms; H2H: 53471 nt, 832 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|55820103|ref|NC_006448.1| Streptococcus thermophilus LMG 18311, complete genome (length 1796846) dnaA 186 - 1550 + | chromosomal replication initiation protein TERM 1 2410 - 2420 + G 73 -5.4 -4.58685 | ATTCTATTCCGTAGT GAGA CAA TCTC TTTTTACACACGTTT dnaN 1705 - 2841 + | DNA polymerase III subunit beta TERM 2 2876 - 2844 - f 83 -7.9 -4.71708 | opp_overlap 2851, overlap 2846 2851 AAGAACAAACTAAAA TCGAAAAGTTATCCA CTG TGGATAACTTTTTTA CTAAGGAGGAAGTTT TERM 3 2874 - 2846 - f 78 -10.5 -2.62724 | opp_overlap 2851, overlap 2844 2851 GAACAAACTAAAATC GAAAAGTTATCCA CTG TGGATAACTTTTT TACTAAGGAGGAAGT TERM 4 2851 - 2869 + F 100 -10.4 -5.14563 | opp_overlap 2846 2844 2851 AACTAAAATCGAAAA GTTATCCA CTG TGGATAAC TTTTTTACTAAGGAG TERM 5 2869 - 2851 - f 100 -10.4 -4.4518 | opp_overlap 2851, overlap 2846 2844 AACTAAAATCGAAAA GTTATCCA CTG TGGATAAC TTTTTTACTAAGGAG TERM 6 3034 - 3052 + G 75 -8.2 -4.07687 | ATTGTGATCATGTGG TCATGATG AGT CGTCATGA TTTTGAAAAGAAGCT stu0003 2892 - 3083 + | hypothetical protein TERM 7 3317 - 3345 + G 79 -9.7 -3.69483 | overlap 3316 3315 TTAACAGCAGGTATC GTTGGTTTGCCGA ACG TTGGTAAATCAAC TCTTTTCAATGCAAT TERM 8 3905 - 3879 - g 83 -3.1 -5.66229 | gap 1, opp_overlap 3886 AGGAAGAACAAAAAA TTGTTAAG-GGA CTCT TCCTCTTGACAA CAAAACCAGTGCTTT stu0004 3296 - 4411 + | translation-associated GTPase TERM 9 4427 - 4461 + F 72 -8.1 -3.51934 | gap 1, opp_overlap 4433, overlap 4433 AAAATAAAAAATAGT GTAGAAGG-CTGAAAA GTAT TTTTCAGTCCTTTTGC TGTTTATCAAAGAGG TERM 10 4433 - 4455 + F 71 -5.7 -4.53036 | gap 1, opp_overlap 4433, overlap 4427 AAAAATAGTGTAGAA GG-CTGAAAA GTAT TTTTCAGTCC TTTTGCTGTTTATCA TERM 11 4618 - 4636 + G 81 -7.4 -4.58395 | GGAAAAGACTTTTAA GGCTGAAG TAG CTTCAACC TTTTTAAACGGTGAG pth 4484 - 5053 + | peptidyl-tRNA hydrolase TERM 12 5158 - 5181 + G 71 -6.6 -3.97834 | opp_overlap 5159, overlap 5159 TTTCTGGTTCGAGCA AGGCAGTTGC CATG GCATCTGCCC TTTCTAATCAGGTTC TERM 13 5159 - 5180 + G 75 -10.1 -2.98219 | opp_overlap 5159, overlap 5158 TTCTGGTTCGAGCAA GGCAGTTGC CATG GCATCTGCC CTTTCTAATCAGGTT TERM 14 5180 - 5159 - g 75 -10.1 -3.14132 | opp_overlap 5159 5158 TTCTGGTTCGAGCAA GGCAGTTGC CATG GCATCTGCC CTTTCTAATCAGGTT TERM 15 5273 - 5287 + G 79 -3.6 -5.42259 | AGCTATCTTAGGAGA GGATAA GGT TTATTC TTTTTTTGCGGATGA trcF 5046 - 8552 + | transcription repair coupling factor TERM 16 8619 - 8648 + F 100 -13.7 -5.19879 | TTTTCATAAATCTCC TGAGAGGGTCGAC TAGT GTCGATCCTCTTA TTTTTGTGTTTGAAA stu0007 8738 - 9013 + | hypothetical protein divIC 8997 - 9368 + | MesJ/Ycf62 family cell-cycle protein TERM 17 9515 - 9504 - g 74 -4.4 -4.83593 | opp_overlap 9514, overlap 9514 AACAAGCATGAAAAA GCTA TTAA TAGC TGCAACTGCTGTGCT stu0009 9496 - 10788 + | hypothetical protein TERM 18 10820 - 10800 - g 70 -2.6 -5.05079 | ATAATGACAGAAAAA TTGTTGCA AATGA TGCAAGAA AAAGGTTATTTTAAC TERM 19 10836 - 10824 - g 83 -6.3 -5.11063 | ATGATGCAAGAAAAA GGTTA TTT TAACC AGCACAAGAAAGTTT TERM 20 10867 - 10895 + G 100 -12.5 -4.9725 | TAGTAGCAGTATCAG GTGGAGCAGACTC GAT GAGTTTGCTGCAC TTTTTGTATAACCAT TERM 21 11128 - 11166 + G 74 -4.7 -4.88388 | gap 1 CTGACTACTCTGCTC TTGTTACAGCC-CATCAT GCTG ATGATCAGGCTGAGACAA TTTTTATGAGATTGT TERM 22 11918 - 11908 - g 71 -4 -4.87592 | TCATAGACAATAAAA TTTC AGA GAAA GATCGTCAAAAAGCC stu0010 10788 - 12053 + | cell-cycle protein MesJ/Ycf62 family TERM 23 12178 - 12160 - g 100 -7.5 -5.62219 | opp_overlap 12160 AAGACATTAAAAAAA TCCTCTT TTCCC AAGAGGA TATCGTAACTAAAAC hpt 12135 - 12677 + | hypoxanthine-guanine phosphoribosyltransferase TERM 24 13437 - 13447 + G 75 -5.4 -4.6759 | CCATTCTTTAGCATC TCAG GTT CTGA TTTTGTTGAAATGTT TERM 25 13713 - 13723 + G 71 -6.8 -4.11394 | GATCCAGCCCTTCTA CGTC CGG GACG TTTTGACCGTAAAGT ftsH 12693 - 14660 + | cell division protein stu0013 14899 - 14678 - | hypothetical protein TERM 26 14712 - 14735 + g 100 -13.2 -4.87626 | opp_overlap 14706 GAAAAGTTACAACCT GGAGAGGACC AATT GGTTCTCTCC TTTTTGATGTTCAAA stu0014 15703 - 14978 - | hypothetical protein stu0015 15905 - 15621 - | hypothetical protein TERM 27 15782 - 15794 + gH 71 -4.9 -4.59773 | CACACTCTAGATAGG GAATT TTA AATTC TTTTTGGAAGTCAAA TERM 28 16015 - 16055 + G 100 -18.5 -5.18726 | opp_overlap 16025 TTATAGGTTGAACTG CACCCCAAAAGTTAGACAG AAA CAATCTAACTTTTGGGGTG TTTTTATTATGAAAC stu0016 15986 - 16246 + | hypothetical protein stu0017 16446 - 16601 + | hypothetical protein stu0018 16577 - 16915 + | hypothetical protein TERM 29 17408 - 17376 - g 93 -10 -4.69549 | opp_overlap 17376 AAGGTAAAATTAAAA GGACTCATTTCTGT GCAAT ACAGAACTAAGTCC TTTGTGTAAATTAAT TERM 30 17376 - 17408 + G 79 -8.5 -4.09509 | opp_overlap 17376 AAGGTAAAATTAAAA GGACTCATTTCTGTG CAA TACAGAACTAAGTCC TTTGTGTAAATTAAT stu0019 16929 - 17417 + | hypothetical protein TERM 31 17459 - 17470 + F 71 -3 -5.09245 | GTACAGCTCTTATGG GATT TTTT AATC TTTTTCTACTTTTAA TERM 32 17782 - 17772 - f 71 -5.4 -4.52415 | overlap 17751 17750 17773 ATTTACAAGAATAAA TCGT CAG ACGA CGGTAATGAGTTAAC TERM 33 19927 - 19908 - f 91 -12.2 -3.66803 | opp_overlap 19907 19906 CGGCAAGAGGGCAAA CCGAAGAG TTTA CTCTTCGG GGTTGTAGGACTGCA TERM 34 19984 - 19969 - f 76 -7.6 -3.92604 | AAGATTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 35 22702 - 22714 + F 80 -10.5 -3.09327 | ACGCCTGATGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 36 23207 - 23187 - f 79 -9.7 -3.31263 | overlap 23189 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAAT TERM 37 23205 - 23189 - f 86 -10.9 -3.22475 | overlap 23187 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA TERM 38 24222 - 24244 + F 100 -9.3 -5.49579 | opp_overlap 24226 TTCTCCGTATTATGA CGAATTATC ATTTA GATAATTCG TTTTCTTTTTTATAG mreC 24270 - 25100 + | rod shape-determining protein MreC mreD 25048 - 25626 + | rod shape-determining protein MreD TERM 39 25638 - 25659 + F 85 -6.6 -5.2422 | ATAAAACTGTAATAT TGGCGTAA TAAAGT TTGCGCCA TTTTTTGATATAATT TERM 40 26231 - 26209 - g 73 -7.8 -3.87952 | overlap 26205 CAAGAAGAAAATCAA GCTGCAAT TAATACT ATTGCAGC TAATAAGTCAGAACT TERM 41 26633 - 26611 - g 77 -10.6 -2.90904 | opp_overlap 26615, overlap 26608 26614 TCAGAAGTACAACCA GAATCAGCTG CAC CAGCTGTTTC AGAAGCTCCTGCTAG TERM 42 26615 - 26629 + G 79 -10 -3.54741 | opp_overlap 26614 26611 26608 AAGTACAACCAGAAT CAGCTG CAC CAGCTG TTTCAGAAGCTCCTG pcsB 25711 - 27135 + | glucan binding protein TERM 43 27178 - 27145 - f 75 -9 -3.48684 | opp_overlap 27151 27176, overlap 27150 27151 CCATAATGAGTACAA CAAAAGCGATTCGG CTATTC CCGAATCGTTTTTA TTTTATGTAAATAAT TERM 44 27173 - 27150 - f 80 -6.7 -4.81814 | opp_overlap 27151, overlap 27145 27151 ATGAGTACAACAAAA GCGATTCGG CTATTC CCGAATCGT TTTTATTTTATGTAA TERM 45 27151 - 27172 + F 100 -10.2 -5.58522 | opp_overlap 27150 27145 27151 TGAGTACAACAAAAG CGATTCGG CTATTC CCGAATCG TTTTTATTTTATGTA TERM 46 27172 - 27151 - f 85 -10.2 -3.48004 | opp_overlap 27151, overlap 27150 27145 TGAGTACAACAAAAG CGATTCGG CTATTC CCGAATCG TTTTTATTTTATGTA TERM 47 27419 - 27397 - g 73 -7.8 -3.81146 | opp_overlap 27396 TCGTCTAACCAAGAA TTAGCAGCAA AAG TTGCTGATAA AATTGGTATTGAACT TERM 48 27499 - 27511 + G 85 -5.5 -5.30348 | ATTGAAGAGTCTATT CGTGG TCA TCACG TTTTTATTCTTCAAT prsA1 27337 - 28314 + | ribose-phosphate pyrophosphokinase TERM 49 28366 - 28388 + T 87 -6.3 -5.47431 | AAAAGCTAACATCTA GAGAGGATC AGATA GGTCTTCTC TTTTTTATATGTTAA stu0024 28659 - 28393 - | truncated IS1193 transposase stu0025 29048 - 28782 - | truncated IS1193 transposase TERM 50 29251 - 29263 + H 73 -4.1 -5.01546 | opp_overlap 29251, overlap 29255 TCACTTTTCATTATA GTTCT TAT GGAAC TTTTTGTCTGCATTT TERM 51 29331 - 29284 - H 100 -11.5 -4.65895 | opp_overlap 29255 GTCTGCATTTAAAAA GCTCCATAATCTCTACAGTGG TTTTAC CCCCTACAGAAATTATAGAGC CATTAAAGCTAGCCT TERM 52 30222 - 30204 - g 70 -8.9 -3.14602 | CTCAGTTGATTAAGA GTCACCA GTATT TGGTGAC GGCTGCAGCTACTAT araT 29414 - 30598 + | aromatic amino acid aminotransferase recO 30585 - 31358 + | DNA repair protein RecO TERM 53 31341 - 31369 + F 100 -11.2 -4.88918 | opp_overlap 31341 31344 CATATTATGAGTAAA GAAGATAATGCT GATTA AGCATTGTCTTC TTTTGTTTCACGTGA TERM 54 31369 - 31341 - f 79 -9 -3.81287 | opp_overlap 31341, overlap 31344 CATATTATGAGTAAA GAAGATAATGCT GATTA AGCATTGTCTTC TTTTGTTTCACGTGA TERM 55 31718 - 31708 - g 74 -4 -5.10154 | overlap 31701 AGCTAAAATCAAAAA CTAT TTG ATAG CGAATGAACGTGTGA TERM 56 31888 - 31898 + G 80 -4.6 -5.29445 | TACAGGTGCTCTTTT GGCC GCC GGTC TTTTTGTTGTTGGAC plsX 31574 - 32578 + | putative glycerol-3-phosphate acyltransferase PlsX acpP1 32578 - 32823 + | acyl carrier protein TERM 57 32853 - 32829 - f 83 -5.8 -5.08731 | opp_overlap 32829 32835 TAACAAATAAGAAAA CTAGACTCTA GTTGT TAGATTCTAG AGGAATATAATAATG purC 33109 - 33816 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 58 36456 - 36434 - g 88 -10.6 -3.97834 | opp_overlap 36433, overlap 36422 36435 CAAGCTGATCACAAA GTGACAGCTG CAT CAGCTGTCAA ATATGGTGGTGTCAT TERM 59 36455 - 36435 - g 95 -14.1 -2.98219 | opp_overlap 36433, overlap 36422 36434 AAGCTGATCACAAAG TGACAGCTG CAT CAGCTGTCA AATATGGTGGTGTCA TERM 60 37085 - 37055 - g 70 -3.3 -4.8622 | gap 1, opp_overlap 37064, overlap 37058 TTGCTCAATGAAAAA GTACG-TGCAGCTA TTGA TAGCTTCATCGAAC GTGGTGGTTTAATCA purL 33848 - 37597 + | phosphoribosylformylglycinamidine synthase II (FGAM synthetase) TERM 61 37943 - 37955 + G 71 -6.3 -4.21194 | CATCGTGATATGGGG CTTCT CTC AGAAG TTTTCCGTGATCCAG purF 37766 - 39205 + | amidophosphoribosyltransferase purM 39236 - 40255 + | phosphoribosylaminoimidazole synthetase purN 40255 - 40809 + | phosphoribosylglycinamide formyltransferase purH 40827 - 42425 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 62 42548 - 42587 + F 100 -14.6 -5.19328 | opp_overlap 42546 42542 42558, overlap 42550 CTCCTAAAATAACTG TACCCCAAAAGTTAGA CAGAAAAC TCTAACTTTTGGGGTG TTTTTATTATGAAAT TERM 63 42550 - 42585 + F 100 -15 -4.22377 | opp_overlap 42546 42542 42558, overlap 42548 CCTAAAATAACTGTA CCCCAAAAGTTAGA CAGAAAAC TCTAACTTTTGGGG TGTTTTTATTATGAA stu0036 42596 - 43054 + | hypothetical protein stu0037 43108 - 43422 + | hypothetical protein TERM 64 43708 - 43676 - g 100 -12.2 -4.74084 | opp_overlap 43676 AAAGTAAAATTAAAA GGACTTAGTCCTGT GCAGT ACAGAACTAAATCC TTTGGATAAATTAGT TERM 65 43676 - 43708 + G 73 -8.5 -3.68886 | opp_overlap 43676 AAAGTAAAATTAAAA GGACTTAGTCCTGTG CAG TACAGAACTAAATCC TTTGGATAAATTAGT stu0038 43472 - 43717 + | hypothetical protein TERM 66 43719 - 43730 + T 71 -3 -5.05782 | opp_overlap 43719 AATCCTTTGGATAAA TTAG TTGT CTAA TTTTTTGGGGTCAGT TERM 67 43810 - 43793 - T 84 -6.3 -5.15634 | opp_overlap 43793 CAGTGTATTAAAAAA CAACCGT TCTC ACGATTG TTCAATAAATTTAAA cbpD1 44660 - 43821 - | cell wall protein precursor, choline binding protein TERM 68 44796 - 44814 + H 86 -5.9 -5.47159 | opp_overlap 44787 44796 CATAATCTCCTAAGA GGCGGTC CAAGT GGTCGCC TTTTTTATGTTCAAA purD 44968 - 46230 + | phosphoribosylamine--glycine ligase TERM 69 46325 - 46301 - f 100 -17.3 -4.08216 | TTACCGTGGTGAAAA GACCAGAACAG ATC CTGTTCTGGTC GGGGGAACTTTGAGA TERM 70 46462 - 46436 - f 85 -10.3 -3.4055 | ATATAAGAAAGGGAA TGTTCAGTTAG TTTTC CTAACCGAACA CGGGACTAAATCCCT TERM 71 47050 - 47033 - g 85 -2.7 -5.70522 | overlap 47035 AAGAACAAGAAAAAA TCGCAGA GGAG TCTACAA ATGAGCTCAACTAAA purE 46564 - 47064 + | phosphoribosylaminoimidazole carboxylase catalytic subunit purK 47051 - 48142 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 72 48335 - 48314 - f 70 -4.5 -4.66535 | gap 1 AAGGGTGAAAACAAA CATGACACCT ATG AGGTA-CATG TGGCGAAAGCTCATT stu0043 48335 - 49090 + | hypothetical protein stu0044 49162 - 49326 + | hypothetical protein TERM 73 49338 - 49328 - f 71 -6.8 -4.21319 | opp_overlap 49328 AGGAATTTGAATAAA CCGA CTG TCGG TTGTTAATTGATGTG purB 49605 - 50903 + | adenylosuccinate lyase TERM 74 50943 - 50917 - T 79 -8.8 -3.78034 | opp_overlap 50923, overlap 50923 GATTTATATGAATAA GAAAAAGCAGGA CCG CCCTGCTTTTTT ATGGTGATATCTATG TERM 75 50937 - 50923 - T 89 -7.8 -5.31855 | opp_overlap 50923, overlap 50917 TATGAATAAGAAAAA GCAGGA CCG CCCTGC TTTTTTATGGTGATA TERM 76 50923 - 50937 + T 89 -7.1 -5.32882 | opp_overlap 50923 50917 TATGAATAAGAAAAA GCAGG ACCGC CCTGC TTTTTTATGGTGATA TERM 77 50945 - 50964 + T 76 -3.6 -5.35365 | overlap 50947 CGCCCTGCTTTTTTA TGGTGATA TCTA TGTCACTA TTTTTGTTCTCTTTT TERM 78 51345 - 51360 + T 91 -5.4 -5.80727 | opp_overlap 51345 ATTTCCCCTAAGAAA GTCTAG CAAT CTAGGC TTTTTTCTTCTTTTT tnp1239 52454 - 51414 - | IS1239 transposase TERM 79 51497 - 51514 + g 74 -4.9 -4.81082 | gap 1, opp_overlap 51497 AATTTTCGATAAAAG CGACTTCT TTC AGA-GTCG TTTTCTTGGTTCCTT TERM 80 52096 - 52108 + g 70 -3.4 -4.96028 | ATTTTCTCTTTCATT TCCT TCGTT AGGA TTATTTTTTTTACCG TERM 81 52486 - 52509 + r 75 -9.6 -2.74012 | opp_overlap 52487, overlap 52491 52497 TGTTTTGTCAGCTAA ACCAAGGCTA TTAT TAGCCTTGGC TACTTAGCCTAATAG TERM 82 52508 - 52487 - R 95 -13.1 -3.64703 | opp_overlap 52486 52491 52497 GTTTTGTCAGCTAAA CCAAGGCTA TTAT TAGCCTTGG CTACTTAGCCTAATA TERM 83 52942 - 52966 + r 93 -7.9 -5.65513 | opp_overlap 52934 52942 52945 TCATAATCTCCAAAA GAGCTCAACAT GAT GTGTTGGGTTC TTTTTTTGGTTACTA TERM 84 52987 - 52998 + r 75 -7.2 -4.24606 | opp_overlap 52987 TTGGTTACTAAAAAA CGCC CTTA GGCG TTTTAAGTATAGATT TERM 85 52998 - 52987 - R 88 -7.2 -5.14563 | opp_overlap 52987 TTGGTTACTAAAAAA CGCC CTTA GGCG TTTTAAGTATAGATT argS 54703 - 53012 - | arginyl-tRNA synthetase TERM 86 54502 - 54513 + g 70 -3 -5.02476 | opp_overlap 54483 CAACTTTTTCAAAGT TTGA GGCA TCAA TTTTTTCAGCGATGT argR 54828 - 55286 + | arginine repressor stu0049 55286 - 55645 + | hypothetical protein TERM 87 56569 - 56590 + G 70 -5.9 -4.42806 | opp_overlap 56569 56567 TAGAGCGTCAGAATA TTATCCAAG TTTT CTTGGACAA TTTCTTTGAGCGTAG mutS1 55638 - 58196 + | DNA mismatch repair protein TERM 88 58194 - 58227 + T 82 -7.5 -4.48877 | opp_overlap 58199, overlap 58199 58202 TTAAAACAGAAACTA TAAAAGAAGCTTGTC GATT GACAGGCTTCTTGTC TTTTATAGGTGTTTC TERM 89 58222 - 58199 - T 100 -9.6 -4.6575 | opp_overlap 58194 58199 58202 ACAGAAACTATAAAA GAAGCTTGTC GATT GACAGGCTTC TTGTCTTTTATAGGT TERM 90 58199 - 58222 + T 95 -11.8 -4.03183 | opp_overlap 58199, overlap 58194 58202 ACAGAAACTATAAAA GAAGCTTGTC GATT GACAGGCTTC TTGTCTTTTATAGGT TERM 91 58202 - 58219 + T 78 -7.7 -4.12066 | opp_overlap 58199, overlap 58199 58194 GAAACTATAAAAGAA GCTTGTC GATT GACAGGC TTCTTGTCTTTTATA stu0051 58685 - 58443 - | hypothetical protein stu0052 59073 - 58699 - | hypothetical protein TERM 92 59145 - 59157 + H 73 -9.1 -2.80028 | overlap 59142 59144 CTTATTTTTGATTGA GGAGG CCT CCTCC CTTTCACATCTTCAT TERM 93 59321 - 59337 + G 76 -7.3 -4.18697 | opp_overlap 59319 ATAATGAAATGGATA GCAGGAA TTT TTCTTGC TTTTAGCCTGATTTT stu0053 59297 - 59602 + | hypothetical protein TERM 94 60339 - 60315 - g 86 -2.1 -5.94597 | opp_overlap 60316 60320, overlap 60316 CAACAGCAAAAAAAA TGGTGGAAATT TCA AATTCCGACCT TGATTTTGAAGTTTC mutL 59654 - 61597 + | DNA mismatch repair protein stu0055 61724 - 61948 + | hypothetical protein TERM 95 61967 - 61982 + F 93 -7.6 -5.46657 | opp_overlap 61962 61967 AAGGAGCAAACAGAA TCCACT TTCG AGTGGA TTTTTTGTTACAATA TERM 96 61982 - 61967 - f 73 -7.6 -3.87925 | opp_overlap 61967, overlap 61962 AAGGAGCAAACAGAA TCCACT TTCG AGTGGA TTTTTTGTTACAATA TERM 97 62271 - 62307 + G 72 -3.1 -5.13741 | overlap 62298 AGAGATGATGCCCAC CTACTTTTTGGTTTTCA TAC TGAAGATGAGAAAGAAG TTTTTCTTAAGTTGA ruvA 62100 - 62690 + | Holliday junction DNA helicase motor protein TERM 98 63178 - 63194 + G 71 -5.1 -4.56775 | TCAAATTTTTAGGAC CGACTAC CAT GTACTCG TTTTTACAAGCAGCT tag 62697 - 63251 + | 3-methyladenine DNA glycosylase I TERM 99 64088 - 64046 - g 90 -10.9 -4.19704 | gap 1 GAAGCGGATCGAAAA CTAGATGTTTTAGAAGAACA AATT CGTTCTACTAAAAC-TCTAG ATGGAAAAAGCTTGT cinA 63347 - 64618 + | competence damage-inducible protein A TERM 100 65634 - 65616 - g 71 -6.1 -4.17023 | TCAAGGATCTGAAAA TGCTAAA AAGTA TTTAGCA GATCACCCTGAGATT recA 64654 - 65808 + | recombinase A TERM 101 65817 - 65831 + F 74 -3.5 -5.36689 | AGAATAAGTGTCAAA GAGCC CAAAA GGTTC TTTTCTTTTTGATTT TERM 102 66088 - 66077 - g 70 -3 -5.05116 | TTATAAAGAACAAAA TCTT GGTA AAGA ACCACTTACAAAAGA spxA 65985 - 66383 + | transcriptional regulator Spx TERM 103 66373 - 66360 - f 72 -8.1 -3.52113 | overlap 66357 66363 GTCGAAAATTCACAA GCACG CATG CGTGC AGCACTATAAAATTC TERM 104 66649 - 66629 - f 79 -9.9 -3.22668 | opp_overlap 66627, overlap 66627 AAAGTGTTGACAAGA TATTCTATC TTT GATAGAATA TAGAAGTTGTCTCAA TERM 105 66763 - 66753 - f 71 -5.4 -4.52415 | overlap 66732 66731 66754 ATTTACAAGAATAAA TCGT CAG ACGA CGGTAATGAGTTAAC TERM 106 68908 - 68889 - f 91 -12.2 -3.66803 | opp_overlap 68888 68887 CGGCAAGAGGGCAAA CCGAAGAG TTTA CTCTTCGG GGTTGTAGGACTGCA TERM 107 68965 - 68950 - f 76 -7.6 -3.92604 | AAGATTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 108 71683 - 71695 + F 80 -10.5 -3.09327 | ACGCCTGATGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 109 72748 - 72763 + F 95 -9 -5.76633 | CGCCGGTATAAGTTG CACTCC ATAA GGAGTG TTTTTTTGTATATAG TERM 110 72996 - 73010 + G 71 -7.2 -3.91027 | ATTCTTCTTTTGATT CTTTAG GGG CTAAAG TTTCATATATGATTA polC 72791 - 77185 + | DNA polymerase III PolC TERM 111 77215 - 77239 + F 100 -10.8 -5.31519 | opp_overlap 77221 TGTCATCAACGTTGA GAGAATGGAG TCAGT CTCCGTTCTC TTTTTGTTTGGATAT pepS 77349 - 78590 + | aminopeptidase PepS stu0064 78610 - 78840 + | hypothetical protein TERM 112 78837 - 78894 + F 86 -6 -5.56112 | gap 1, opp_overlap 78849 78852, overlap 78847 78849 TTGGAATCGTAATAG TTAGAAATGAAAGAGTTCTGAGATATT GGTTA GATATCTCAGAATTCTCTT-TTTCTTA TTTTTTCATTTTTAT TERM 113 78847 - 78885 + F 100 -9.1 -5.54403 | opp_overlap 78849 78852, overlap 78837 78849 AATAGTTAGAAATGA AAGAGTTCTGAGATATT GGTTA GATATCTCAGAATTCTC TTTTTCTTATTTTTT TERM 114 78849 - 78883 + F 100 -11.7 -4.32946 | opp_overlap 78849 78852, overlap 78847 78837 TAGTTAGAAATGAAA GAGTTCTGAGATATT GGTTA GATATCTCAGAATTC TCTTTTTCTTATTTT TERM 115 78883 - 78849 - f 85 -8.8 -4.15066 | opp_overlap 78849 78847 78837, overlap 78852 TAGTTAGAAATGAAA GAGTTCTGAGATAT TGGTTAG ATATCTCAGAATTC TCTTTTTCTTATTTT TERM 116 78880 - 78852 - f 73 -9.1 -2.79117 | opp_overlap 78849 78847 78837, overlap 78849 TTAGAAATGAAAGAG TTCTGAGATAT TGGTTAG ATATCTCAGAA TTCTCTTTTTCTTAT stu0065 79043 - 79372 + | MarR family transcriptional regulator stu0066 79490 - 80041 + | hypothetical protein TERM 117 80132 - 80100 - T 85 -8.5 -4.09509 | opp_overlap 80100 ATTAATTTACACAAA GGATTTAGTTCTGTA TTG CACAGGACTAAGTCC TTTTAATTTTACCTT TERM 118 80100 - 80132 + T 100 -12.2 -4.69549 | opp_overlap 80100 ATTAATTTACACAAA GGATTTAGTTCTGT ATTGC ACAGGACTAAGTCC TTTTAATTTTACCTT stu0067 80240 - 80091 - | hypothetical protein TERM 119 80255 - 80238 - G 71 -4.9 -4.5442 | CTCGTAACCATAAAA CATCTCA GACT TAAGATG CCAAAGAAGGACTCC stu0068 80578 - 80345 - | hypothetical protein stu0069 80855 - 80592 - | hypothetical protein stu0070 81254 - 80982 - | hypothetical protein stu0071 81909 - 81472 - | bacteriocin self-immunity protein, putative, truncated stu0072 82424 - 81906 - | bacteriocin self-immunity protein, putative, truncated TERM 120 82654 - 82680 + H 100 -10.2 -4.30576 | opp_overlap 82659, overlap 82659 AATGTGTTTACACAC AAAAAGCCCGAT TCT GTCGGGCTTTTA TTTTCGTAATAAGGG TERM 121 82675 - 82659 - H 100 -9.4 -5.03994 | opp_overlap 82654 82659 GTTTACACACAAAAA GCCCGA TTCTG TCGGGC TTTTATTTTCGTAAT TERM 122 82659 - 82675 + H 100 -10.1 -5.14626 | opp_overlap 82659, overlap 82654 GTTTACACACAAAAA GCCCGAT TCT GTCGGGC TTTTATTTTCGTAAT TERM 123 83190 - 83169 - g 74 -3.7 -5.14563 | gap 1, overlap 83172 83184 GTTGGTACTAAAAAA CAAGCAGCTG AAG CAGTTGCT-G AAGAAGCAACTCGTG TERM 124 83188 - 83172 - g 80 -6.5 -4.67552 | overlap 83169 83184 GGTACTAAAAAACAA GCAGCTG AAG CAGTTGC TGAAGAAGCAACTCG TERM 125 83355 - 83343 - g 71 -6.3 -4.15044 | GTCCTTCCTAAGAAA GAAGT TGC ACTTC TTAACAAACAACGTG rpsB 82947 - 83714 + | 30S ribosomal protein S2 TERM 126 83797 - 83761 - f 85 -9.3 -4.08111 | opp_overlap 83764 83796, overlap 83763 83764 TAAAGATACGACAAA CACCTAAGGGGCGGGGC TCA GCCCAGCCCTTTAGTTT TATAAAATAAATTTG TERM 127 83795 - 83763 - f 91 -11.9 -3.61777 | opp_overlap 83764, overlap 83761 83764 AAGATACGACAAACA CCTAAGGGGCGGGGC TCA GCCCAGCCCTTTAGT TTTATAAAATAAATT TERM 128 83794 - 83764 - f 100 -15.4 -2.75982 | opp_overlap 83764, overlap 83763 83761 AGATACGACAAACAC CTAAGGGGCGGGGC TCA GCCCAGCCCTTTAG TTTTATAAAATAAAT TERM 129 83764 - 83794 + F 100 -17.6 -4.40358 | opp_overlap 83763 83761 83764 AGATACGACAAACAC CTAAGGGGCGGGGC TCA GCCCAGCCCTTTAG TTTTATAAAATAAAT TERM 130 84636 - 84615 - g 87 -5.1 -5.42265 | overlap 84605 84616 GTAAACCAGAAAAAA TCTGGGATA AAAT CATCCCAGG TAAAATGGACCGCTT TERM 131 84635 - 84616 - g 77 -8.6 -3.83732 | overlap 84605 84615 TAAACCAGAAAAAAT CTGGGATA AAAT CATCCCAG GTAAAATGGACCGCT TERM 132 84830 - 84852 + G 72 -9.8 -3.03619 | opp_overlap 84830 GACTTTGAATCAGAA GTTGCAGCCA CAA TGGCAGCAGC TCTTAACAACTAATT tsf 83825 - 84865 + | elongation factor Ts TERM 133 84922 - 84886 - T 83 -6.8 -4.96848 | opp_overlap 84883 84891, overlap 84891 GTTGCTAGATAAAAA GAAAAGAAGTTACG TGAATCAAT CGTAACTTCTTTTT TTGTTGTAATTAGAA TERM 134 84891 - 84917 + T 95 -6.7 -5.89921 | opp_overlap 84886 84891, overlap 84883 TAGATAAAAAGAAAA GAAGTTACG TGAATCAAT CGTAACTTC TTTTTTTGTTGTAAT TERM 135 84917 - 84891 - T 85 -6.7 -5.38839 | opp_overlap 84891 84883, overlap 84886 TAGATAAAAAGAAAA GAAGTTACG TGAATCAAT CGTAACTTC TTTTTTTGTTGTAAT stu0075 85446 - 84976 - | hypothetical protein ctsR 85690 - 86145 + | transcriptional regulator of class III stress genes (heat shock response) TERM 136 86187 - 86207 + G 73 -7.5 -4.13304 | overlap 86188 GGCCATTTTCCATCG TGCTCAGCT TGA AGCGGAGCG TTTTGAAAGTCCTTT clpC 86146 - 88596 + | ATP-dependent Clp protease, ATP-binding subunit TERM 137 88635 - 88612 - T 93 -11.2 -4.03321 | opp_overlap 88612 ATATTAAACATCAAA GACAGATTAT ACCC ATAATCTGTC TTTTTGTGTCGATAA TERM 138 88612 - 88635 + T 100 -11.2 -4.99035 | opp_overlap 88612 ATATTAAACATCAAA GACAGATTAT ACCC ATAATCTGTC TTTTTGTGTCGATAA TERM 139 88715 - 88699 - T 100 -10.1 -5.45802 | GGCGTAAAAGAAAAA GCCGAGC CAC GCTCGAC TGTAAGTATTAGAGT stu0078 89545 - 88724 - | D-alanyl-D-alanine carboxypeptidase, truncated stu0079 89774 - 89607 - | D-alanyl-D-alanine carboxypeptidase, truncated TERM 140 90084 - 90130 + r 82 -8.5 -4.04806 | gap 1, opp_overlap 90084 90095, overlap 90095 ACCACGATTTTCAAA GCAAATA-AAAACTATCTTTTG ATAT TAAAAGATAGTTTTGTATTTAC TTGTTTCCTGTGAAG TERM 141 90130 - 90084 - R 82 -10 -3.58522 | gap 1, opp_overlap 90084 90095, overlap 90095 ACCACGATTTTCAAA GCAAATA-AAAACTATCTTTT GATATT AAAAGATAGTTTTGTATTTAC TTGTTTCCTGTGAAG TERM 142 90118 - 90095 - R 93 -6.9 -5.41941 | opp_overlap 90084 90095, overlap 90084 CAAAGCAAATAAAAA CTATCTTTT GATATT AAAAGATAG TTTTGTATTTACTTG TERM 143 90095 - 90118 + r 88 -7.6 -4.84539 | opp_overlap 90095 90084, overlap 90084 CAAAGCAAATAAAAA CTATCTTTTG ATAT TAAAAGATAG TTTTGTATTTACTTG dacA1 91395 - 90127 - | D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein TERM 144 90954 - 90968 + g 74 -4.2 -5.0538 | TGTCAACAAAGGTAC TCTCTG TTC CTGAGA TTTTTTCAGCTAGAG pnpA 91583 - 93808 + | polynucleotide phosphorylase/polyadenylase TERM 145 94302 - 94316 + G 74 -6.4 -4.43208 | opp_overlap 94302, overlap 94303 CAAGCGCGAGGAAGA TGGTCA GGA TGACCG TTTCTTTGCGACTAT stu0082 93817 - 94587 + | hypothetical protein cysE1 94651 - 95280 + | serine acetyltransferase cysS 95662 - 97005 + | cysteinyl-tRNA synthetase stu0085 96998 - 97399 + | hypothetical protein TERM 146 97396 - 97426 + F 73 -7 -3.97019 | opp_overlap 97396, overlap 97403 AGTTGAAAAAGAAAT CTAAAAATTCTGCT GAG AGTAGGATTTTTTG TTGTTTGAAATTCAT TERM 147 97403 - 97419 + F 84 -3.7 -5.72254 | opp_overlap 97396, overlap 97396 AAAGAAATCTAAAAA TTCTGCT GAG AGTAGGA TTTTTTGTTGTTTGA TERM 148 97716 - 97727 + G 72 -4.4 -4.75518 | AAAAAGTTTTCTATA CAAC TTTT GTTG TTTTGATTTTGTCTA stu0086 97682 - 97837 + | hypothetical protein TERM 149 97826 - 97842 + F 71 -3 -5.13741 | GTTAATAGTGAGGCA TCAGCT CCGTA AGTTGA TTTTTCTTCAGTTGA stu0087 97913 - 98101 + | hypothetical protein TERM 150 98424 - 98439 + F 85 -4.6 -5.67063 | TATTTAATACGCTTT GCCCTC GTAA GAGTGC TTTTTTTATGATAGA TERM 151 99164 - 99152 - g 70 -7.7 -3.63627 | TGTGCAGAGCCTAAA TGCCA GTG TGGCA GCTGCGGTTCTTATG trmH 98463 - 99206 + | tRNA/rRNA methyltransferase stu0089 99209 - 99724 + | hypothetical protein stu0090 99733 - 100593 + | hypothetical protein TERM 152 100608 - 100626 + F 77 -6 -4.78237 | overlap 100603 AAGTTAAAGTAAAAA GAGTAGTA AAA TGCTGCTC TTTTATTGTAAAATG stu0091 100894 - 101364 + | hypothetical protein panE 101543 - 102499 + | 2-dehydropantoate 2-reductase (ketopantoate reductase) rplM 102708 - 103154 + | 50S ribosomal protein L13 rpsI 103182 - 103574 + | 30S ribosomal protein S9 TERM 153 103601 - 103628 + T 100 -12.2 -6.59152 | opp_overlap 103561 103560 103603 103605 ATATCAACGTTTCAA GACATTCAAGAT TTTT ATCTTGGATGTC TTTTTTTTTTGTTGA stu0095 103976 - 103734 - | integrase/recombinase, putative, truncated stu0096 104051 - 104314 + | transcriptional regulator, putative, truncated stu0097 104564 - 104668 + | hypothetical protein TERM 154 104689 - 104711 + F 87 -6.3 -5.40072 | opp_overlap 104689 TAATTGATTGAATAA GGCAGGTAT ACGAG GTACTTGCC TTTTTTTACAAGAGA TERM 155 107100 - 107113 + G 83 -3.1 -5.69262 | CATTGGATAGATTTC CTACT TGAA AGTGG TTTTTGTTTTTGTAA TERM 156 107408 - 107393 - g 74 -4.8 -4.66264 | TAAAAGTTTTAAAAA GTTATT CCCA AATAAC ACAATAGTAGTAAAG labB 104847 - 107651 + | lantibiotic biosynthesis protein labC 107689 - 108912 + | lantibiotic biosynthesis protein TERM 157 109105 - 109115 + G 75 -2.6 -5.2422 | AAACTCTACCTATTT TATT TAC AATA TTTTTTGGTATCATT TERM 158 109285 - 109302 + G 75 -2.7 -5.28826 | TTGCAGATACATTGG GACAATT TGAA AATGGTC TTTTTTATCCAATTT labT 108936 - 109811 + | bacteriocin exporter, putative stu0101 110429 - 110941 + | hypothetical protein TERM 159 111045 - 111029 - T 73 -4.5 -5.00616 | opp_overlap 111029, overlap 111031 GTTTTCCTCAAAAAA TCTCAAA CTT TTTGAAA TTCTGGACAAAAGAA TERM 160 111195 - 111222 + T 100 -11.4 -5.7946 | opp_overlap 111197 ATATCAATGTTTCAA GACATTCAAGAG TTAT CTCTTGGGTGTC TTTTTTTATTCAAAA int 112495 - 111278 - | phage integrase family integrase/recombinase TERM 161 112825 - 112807 - R 100 -8.2 -5.93252 | opp_overlap 112807 CTTAAAAATAAAAAA GAAGAGTA AAA TACTCTCC TGCTGTTAAAAAGAT stu0103 114031 - 112976 - | hypothetical protein TERM 162 113192 - 113209 + g 80 -2.1 -5.58074 | CTTTATCCATTTTGA TTTTTTT ACAT AAAGAAA TTTTTTTGCTAGTTC TERM 163 114269 - 114241 - R 77 -8.5 -3.70076 | overlap 114248 114257 TTAAACGTATCTAAA TTAATAATACTAA AAA TTAATATTATTAA AACCATCATCAGTGT stu0106 114535 - 114278 - | hypothetical protein stu0107 115426 - 115043 - | truncated IS1216 transposase TERM 164 115086 - 115121 + g 100 -16.4 -3.56273 | opp_overlap 115091, overlap 115091 ATTTCAGTACAGACC GAAAACCCGAAGAGAG TGCC TTCTTTTCGGGTTTTC TTATATAATCCTCGG TERM 165 115116 - 115091 - G 76 -7.6 -4.26589 | opp_overlap 115091 115086 AGTACAGACCGAAAA CCCGAAGAGA GTGCCT TCTTTTCGGG TTTTCTTATATAATC TERM 166 115091 - 115116 + g 93 -10.5 -4.85918 | opp_overlap 115091, overlap 115086 AGTACAGACCGAAAA CCCGAAGAGAG TGCC TTCTTTTCGGG TTTTCTTATATAATC stu0108 115729 - 115451 - | truncated IS1216 transposase TERM 167 115512 - 115526 + g 80 -2.2 -5.61881 | TCCATTTTCCATGAA TAAAAG GAT TTTTTA TTTTTCTTTTTCCAA stu0110 115915 - 117096 + | hypothetical protein TERM 168 117105 - 117125 + F 100 -9.1 -5.38054 | opp_overlap 117105 117103 117094 GAAATAAAGCTAAGA TATCGCTAA AAT TTGGCGATA TTTTTCTTTATCGAC TERM 169 117151 - 117180 + F 100 -18.1 -3.42503 | opp_overlap 117151 117143 TCGACAAGTTACCAA CAGACTTATCCAC AGGT GTGGATAAGTCTG TTCTCAGTGTTAAAC TERM 170 117180 - 117151 - f 100 -18.1 -3.23711 | opp_overlap 117151, overlap 117143 TCGACAAGTTACCAA CAGACTTATCCAC AGGT GTGGATAAGTCTG TTCTCAGTGTTAAAC TERM 171 117195 - 117210 + F 83 -7.6 -4.68705 | opp_overlap 117195 GTTCTCAGTGTTAAA CCTTGA TTTT TCAAGG TTTTATTAGAATTGT TERM 172 117210 - 117195 - f 71 -7.6 -3.57144 | opp_overlap 117195 GTTCTCAGTGTTAAA CCTTGA TTTT TCAAGG TTTTATTAGAATTGT stu0112 117418 - 117684 + | hypothetical protein stu0113 117696 - 119039 + | hypothetical protein TERM 173 119052 - 119074 + F 93 -9.2 -4.52703 | opp_overlap 119052 119051 TAAACGGATGATAAG TGCTTTACCG GAT TGGTAAGGCA TTTTCTGATGATTTC stu0114 119156 - 119578 + | phosphoglycerate mutase, truncated stu0115 119701 - 119880 + | phosphoglycerate mutase, truncated TERM 174 120493 - 120505 + G 71 -4.8 -4.54404 | opp_overlap 120493, overlap 120495 GGTCAAAAAAATAGC GCCA AAGTA TGGC TTTGTTCTTCGTTTC dacB 119867 - 120664 + | D-alanyl-D-alanine-carboxypeptidase mur3 120661 - 121245 + | peptidoglycan hydrolase TERM 175 121254 - 121267 + F 70 -2.3 -5.34055 | opp_overlap 121254 TCGCTGATATTAGAA CACCC CTAA GGATG TTTTTTAATGTTTCT TERM 176 121301 - 121327 + F 100 -15.4 -6.32976 | overlap 121313 TCTCTAGATGTATTT TTAGCACTCTTT CAA AAAGAGTGCTAA TTTTTTTGTTTTTTT TERM 177 121313 - 121335 + F 86 -2.8 -5.86332 | overlap 121301 TTTTTAGCACTCTTT CAAAAAGAGT GCT AATTTTTTTG TTTTTTTTGGGTTGA hrcA 121435 - 122517 + | heat-inducible transcription repressor grpE 122501 - 123082 + | heat shock protein, chaperonin dnaK 123211 - 125034 + | molecular chaperone DnaK TERM 178 125234 - 125256 + F 100 -9.9 -4.67353 | opp_overlap 125234 125228 GCATAAGAAGAAATC CAGAGGTTG CAAAC CAGCCTCTG TTTTTCGCTAAATAA TERM 179 125889 - 125873 - g 71 -3.7 -4.85782 | overlap 125874 GTGCTGAAAAAGAAA TTCACTA CAA TCGTGAA GTGACATGTAAGACA dnaJ 125461 - 126594 + | heat shock protein, chaperonin TERM 180 126592 - 126625 + F 100 -11.3 -4.10925 | gap 1, opp_overlap 126600 126601, overlap 126601 GTTTTGGAGGATTTA TAAAGAAAG-GACGCT AAA AGCGTCTTTTTCTTTA TTTTGGAAGCTGTAT TERM 181 126616 - 126600 - f 76 -6.5 -4.57482 | opp_overlap 126592 126601, overlap 126601 GGATTTATAAAGAAA GGACGCT AAA AGCGTCT TTTTCTTTATTTTGG TERM 182 126615 - 126601 - f 81 -10 -3.33766 | opp_overlap 126592 126601, overlap 126600 GATTTATAAAGAAAG GACGCT AAA AGCGTC TTTTTCTTTATTTTG TERM 183 126601 - 126615 + F 100 -10 -5.59962 | opp_overlap 126601 126600, overlap 126592 GATTTATAAAGAAAG GACGCT AAA AGCGTC TTTTTCTTTATTTTG truA 126700 - 127446 + | tRNA pseudouridine synthase A thiD 127439 - 128200 + | phosphomethylpyrimidine kinase stu0124 128291 - 128659 + | hypothetical protein TERM 184 128893 - 128873 - f 79 -9.9 -3.22668 | opp_overlap 128871, overlap 128871 AAAGTGTTGACAAGA TATTCTATC TTT GATAGAATA TAGAAGTTGTCTCAA TERM 185 129007 - 128997 - f 71 -5.4 -4.54323 | overlap 128998 AATTACAAGAATAAA TCGT CAG ACGA CGGTAATGAGTTAAC TERM 186 131152 - 131133 - f 91 -12.2 -3.66803 | opp_overlap 131132 131131 CGGCAAGAGGGCAAA CCGAAGAG TTTA CTCTTCGG GGTTGTAGGACTGCA TERM 187 131209 - 131194 - f 76 -7.6 -3.92604 | AAGATTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 188 133927 - 133939 + F 80 -10.5 -3.09327 | ACGCCTGATGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 189 134432 - 134412 - f 79 -9.7 -3.31263 | overlap 134414 AGTTCAGTGGTAGAA CACCACCTT GCC AAGGTGGGG GTCGCGGGTTCGAAT TERM 190 134430 - 134414 - f 86 -10.9 -3.22475 | overlap 134412 TTCAGTGGTAGAACA CCACCTT GCC AAGGTGG GGGTCGCGGGTTCGA TERM 191 134814 - 134804 - f 71 -5.4 -4.52415 | overlap 134783 134782 134805 ATTTACAAGAATAAA TCGT CAG ACGA CGGTAATGAGTTAAC TERM 192 136959 - 136940 - f 91 -12.2 -3.66803 | opp_overlap 136939 136938 CGGCAAGAGGGCAAA CCGAAGAG TTTA CTCTTCGG GGTTGTAGGACTGCA TERM 193 137016 - 137001 - f 76 -7.6 -3.92604 | AAGATTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 194 139734 - 139746 + F 80 -10.5 -3.09327 | ACGCCTGATGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 195 139863 - 139879 + F 100 -10.9 -6.01369 | AGTATAATTTTTTAA GCTAGAC ATT GTCTAGC TTTTTTTGTTATTTG TERM 196 140451 - 140404 - f 100 -12.3 -4.70659 | opp_overlap 140382 140375 GTGTACACTCAAAAA GCTCTATAATATCTACAGTAG TTTTAC CCACTACAGAAATTATAGAGC CAAAATCGTTATTGT TERM 197 142035 - 142021 - g 73 -7.2 -3.99353 | overlap 142017 TAGATATTAACCAAA TGTCAT CTG ATGACA TGAATAATGTGACTA amiA2 140604 - 142571 + | oligopeptide ABC uptake transporter substrate-binding protein TERM 198 142623 - 142637 + T 100 -7.1 -5.77988 | opp_overlap 142623 GCTAACATCTAGAGA GGACC GGGTA GGTCC TTTTTTTATGTATGT stu0126 143520 - 142609 - | truncated IS1193 transposase TERM 199 143640 - 143593 - H 93 -8.7 -4.65895 | overlap 143594 GTCTGTATTCAAAAA TCTCTATAATCTCTACAGTAG TTTTAC CCACTACAGAAATTATAGAGC CATTTTAAGTCGTCA TERM 200 143639 - 143594 - H 90 -12.2 -3.39216 | overlap 143593 TCTGTATTCAAAAAT CTCTATAATCTCTACAGTAG TTTTAC CCACTACAGAAATTATAGAG CCATTTTAAGTCGTC TERM 201 143987 - 143952 - H 71 -8.6 -2.99142 | gap 1, opp_overlap 143958, overlap 143958 TTCAGTAATAATAAG GGAAAAGAATTAG-ACA TCG TGTTCTAATTCTTTTTC TGGCTCTTTGTCAAC TERM 202 143981 - 143958 - H 72 -6.2 -4.38637 | gap 1, opp_overlap 143958, overlap 143952 AATAATAAGGGAAAA GAATTAG-ACA TCG TGTTCTAATTC TTTTTCTGGCTCTTT TERM 203 143958 - 143981 + H 81 -6.2 -4.92363 | gap 1, opp_overlap 143958 143952 AATAATAAGGGAAAA GAATTAG-ACA TCG TGTTCTAATTC TTTTTCTGGCTCTTT TERM 204 144034 - 144052 + H 83 -6 -5.09685 | opp_overlap 144026 144036 AAGCTAACATCTAGA GAGGAC CGGATAA GTCCTC TTTTTATGTATGTTC TERM 205 144502 - 144455 - g 100 -12.3 -4.65895 | overlap 144456 GTCTGCATTCAAAAA TCTCTATAATCTCTACAGTGG TTTTAC CCACTACAGAAATTATAGAGC CATACAAGATAAAGT TERM 206 144501 - 144456 - g 100 -15.8 -3.39216 | overlap 144455 TCTGCATTCAAAAAT CTCTATAATCTCTACAGTGG TTTTAC CCACTACAGAAATTATAGAG CCATACAAGATAAAG TERM 207 144789 - 144799 + G 75 -5.4 -4.72188 | TATTATGGGCAAGTT GTAC CAA GTAC TTTCTTTTACATTGG stu0127 144438 - 144866 + | aminoacylase/N-acyl-L-amino acid amidohydrolase, truncated TERM 208 144995 - 145009 + G 78 -7.2 -4.3467 | opp_overlap 144995 ACAAGTATTTAGCAA GCTTTT GTC AAAAGC TTTTGATGTGCCCGT TERM 209 145211 - 145228 + G 72 -3.4 -5.1101 | overlap 145212 ATTGATTGCTTCCGC TTACCG TCAATC CGGTAG TTTTTTAACTGATCA cfa 144960 - 146159 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 210 146171 - 146198 + T 100 -10.6 -5.11033 | TTAAAAACCTTTTCA GCGTTTGCAACA TTTT TGTCGCGAACGC TTTTTTACAATTGTG TERM 211 146238 - 146224 - T 75 -5 -4.8622 | TTGTGTAACGAAAAA CGCTTT CAT AAAACG ATATCGTTTCACTTA stu0129 146884 - 146390 - | truncated IS1193 transposase TERM 212 147004 - 146957 - H 100 -12.3 -4.70659 | opp_overlap 146935 146933 GTGTACACTCAAAAA GCTCTATAATCCCTACAGTAG TTTTAC CCACTACAGAAATTATAGAGC CATATAATAAAGGAG TERM 213 147056 - 147042 - H 89 -7.1 -5.33848 | opp_overlap 147042 147046, overlap 147046 AGGACAACTAAAAAA GCACC TTGCT GGTGC TAGTCTCTTGCCTGC TERM 214 147092 - 147105 + H 89 -6.7 -5.73563 | TCGTAAATTGATTGA TACCC TAAC GGGTA TTTTTTTGCTTTCCT TERM 215 147541 - 147560 + H 75 -5 -4.95547 | TAGTCAAGTTATTTA TAGTGACA TATA TGTCTCTA TTTTATTGTTCTACA TERM 216 147590 - 147613 + H 71 -5.4 -4.49838 | opp_overlap 147590, overlap 147591 ATTCTTTTATAATAG GTCTGTAATT ATCT AATTACAGAA TTTATATTTATTATT TERM 217 147591 - 147612 + H 73 -8.9 -3.27463 | opp_overlap 147590, overlap 147590 TTCTTTTATAATAGG TCTGTAATT ATCT AATTACAGA ATTTATATTTATTAT comX 147638 - 148135 + | transcriptional regulator, competence factor,RNA polymerase sigma factor TERM 218 148214 - 148229 + T 70 -4 -4.8743 | TGTTTATTAGTGACT CTCATT ATAA GATGAG TTTGTTTATTTTACC stu0131 149077 - 148235 - | mechanosensitive ion channel (MscS) family protein TERM 219 148332 - 148346 + g 85 -5.7 -5.252 | opp_overlap 148332 AATTCTGCATAGATA TGGAC TTGTT GTCCA TTTTTTGTAAAAATG TERM 220 149171 - 149152 - H 78 -2.2 -5.63504 | opp_overlap 149153, overlap 149153 AATTGGAGAAAAAAA CTTTCAAA AGGC TTTGAAAT ATGGTAAACTAAACT tig 149218 - 150501 + | trigger factor TERM 221 150513 - 150534 + F 93 -8.1 -5.60689 | opp_overlap 150513 ATAATATGTCTAAAA TCAAGTTTC TGTT GAGACTTGA TTTTTTATTCTATAA TERM 222 150813 - 150803 - g 84 -6.8 -4.89339 | opp_overlap 150804, overlap 150804 AATTACTTAGAAAAA TCGG ATG CCGA TATCCGTAGTTCTTT rpoE 150659 - 151240 + | DNA-directed RNA polymerase subunit delta TERM 223 151313 - 151341 + F 86 -5.9 -5.48213 | opp_overlap 151303 151314, overlap 151314 AAGAGGCCATGATTA AGGCTCCCAGAGT AAA ACTCTTGGGGTCA TTTTTGTTTTCAGTC TERM 224 151314 - 151340 + F 81 -9.4 -3.87301 | opp_overlap 151303 151314, overlap 151313 AGAGGCCATGATTAA GGCTCCCAGAGT AAA ACTCTTGGGGTC ATTTTTGTTTTCAGT TERM 225 151424 - 151447 + F 73 -9 -3.27687 | opp_overlap 151417 151423 TGGTAAAGGACAATT TTGATTATCG AATA CGGTAATCAA TCTGCTTTTTTCATT pyrG 151491 - 153095 + | CTP synthetase TERM 226 153106 - 153127 + F 87 -6.6 -5.5074 | opp_overlap 153106 AATAATGAACTAGAA CAGAGTGG AATAGC CTACTCTG TTTTTTATTGGCTTC stu0135 153190 - 153660 + | hypothetical protein stu0136 153676 - 154122 + | MutT/nudix family protein prmA 154122 - 155075 + | ribosomal protein L11 methyltransferase stu0138 155076 - 155819 + | hypothetical protein TERM 227 155826 - 155842 + F 79 -3.7 -5.56264 | opp_overlap 155826 AATAATTAAGAGAAA GTTGG CTTTGTT CCAAC TTTTTTGTATTTGAC stu0139 156114 - 156494 + | cyclo-nucleotide phosphodiesterase, truncated stu0140 156514 - 156699 + | cyclo-nucleotide phosphodiesterase, truncated stu0141 156683 - 157444 + | cyclo-nucleotide phosphodiesterase, truncated stu0142 157456 - 158205 + | cyclo-nucleotide phosphodiesterase, truncated TERM 228 158555 - 158542 - g 77 -5.2 -4.94902 | opp_overlap 158542 158534 TAAGCAGGAGAAAAA GCCC ATGTCA GGGC TTTTTTGCTCTAGTT TERM 229 158542 - 158555 + G 83 -5.2 -5.2422 | opp_overlap 158542, overlap 158534 TAAGCAGGAGAAAAA GCCC ATGTCA GGGC TTTTTTGCTCTAGTT stu0143 158195 - 158584 + | hypothetical protein nrdI 159098 - 158571 - | hypothetical protein TERM 230 159077 - 159090 + g 74 -5.3 -4.67234 | overlap 159052 159050 GTTCAATCATTCTAA CACAA GATG TTGTG TTTTTCAAGTTGACT TERM 231 159838 - 159828 - g 74 -4.6 -4.90869 | ATGATGAAGGAAAAA CGCC GCG AGCG TGAGGCACTTGTGGA relA 159198 - 161417 + | (p)ppGpp synthetase dtd 161430 - 161873 + | D-tyrosyl-tRNA deacylase TERM 232 161880 - 161904 + F 76 -2.9 -5.58179 | AATAGATAAACAAAT CATTTCTCA CTTTGCA TGGGAGATG TTTTTTATTCTCATC TERM 233 162485 - 162495 + G 80 -8.2 -4.4767 | opp_overlap 162485 AGCAAGCCATTACAA GCCG ACG CGGC TTTTCTGGTAGATGC stu0147 162314 - 162598 + | 1,6-alpha-glucanhydrolase (dextranase), truncated stu0148 162753 - 163043 + | 1,6-alpha-glucanhydrolase (dextranase), truncated TERM 234 163523 - 163547 + G 82 -7.9 -4.58663 | TAGTTGGAATCGTCT TTCTGAAACTC CAC GGGTCTCAGAA TTTTTACCAAGTACT stu0149 163239 - 163850 + | 1,6-alpha-glucanhydrolase (dextranase), truncated TERM 235 164045 - 164074 + F 78 -7.3 -4.31379 | opp_overlap 164050, overlap 164050 AGAATAAATAATAGG TAAAACTCTTTGT ATGA ACAAGGAGTTTTC TTTTGATAGATTGCT TERM 236 164050 - 164069 + F 88 -7.2 -5.13722 | opp_overlap 164050, overlap 164045 AAATAATAGGTAAAA CTCTTTGT ATGA ACAAGGAG TTTTCTTTTGATAGA ilvA 164150 - 165400 + | threonine dehydratase TERM 237 165425 - 165444 + T 83 -7.2 -4.64844 | opp_overlap 165425, overlap 165420 CATATAATGAAAAAA GAACTGAT ATTA GTCAGTTC TTTTCTATGTGTAAA TERM 238 165444 - 165425 - T 85 -6.5 -5.35354 | opp_overlap 165420 165425 CATATAATGAAAAAA GAACTGA TATTAG TCAGTTC TTTTCTATGTGTAAA TERM 239 165554 - 165533 - T 81 -9.5 -3.75153 | opp_overlap 165533 TTTCTTCAATCTAAA TCCCCAGTA TCTC TACTGAGGA TTTTCATTATTCGAT TERM 240 165533 - 165554 + T 80 -7.3 -4.56736 | opp_overlap 165533 TTTCTTCAATCTAAA TCCCCAGTA TCTC TACTGAGGA TTTTCATTATTCGAT def 166175 - 165561 - | peptide deformylase stu0152 166915 - 166277 - | transcriptional regulator, putative TERM 241 167116 - 167138 + G 91 -13.6 -2.87963 | overlap 167109 CCGCTCTACCACCTA TGTTGGACTA CTA TAGTCCAACA TATAATGCTTCTCAA stu0153 167022 - 168185 + | hypothetical protein TERM 242 168499 - 168478 - g 81 -2.9 -5.57729 | opp_overlap 168480, overlap 168480 AAACAACACAAAAAA GACCACGCT ACTT ACCGTGGTT TGATGAAAAAAATCG TERM 243 168497 - 168480 - g 70 -5.5 -4.38219 | opp_overlap 168480, overlap 168478 ACAACACAAAAAAGA CCACGCT ACTT ACCGTGG TTTGATGAAAAAAAT TERM 244 168522 - 168512 - g 76 -2.4 -5.52384 | GTTTGATGAAAAAAA TCGG TCA CCGT CGTAACTTGTTGGCA rpsO 168334 - 168603 + | 30S ribosomal protein S15 TERM 245 168667 - 168637 - T 87 -9.8 -4.00348 | opp_overlap 168643, overlap 168643 CTTGAATGAACGAAA TTGAAACTGCTCCA TGA TGGAGCAGTTTTTA TTTTTGATTAGGATT TERM 246 168661 - 168643 - T 95 -13.2 -3.89336 | opp_overlap 168643, overlap 168637 TGAACGAAATTGAAA CTGCTCCA TGA TGGAGCAG TTTTTATTTTTGATT TERM 247 168643 - 168661 + T 100 -13.2 -5.67529 | opp_overlap 168643 168637 TGAACGAAATTGAAA CTGCTCCA TGA TGGAGCAG TTTTTATTTTTGATT TERM 248 168804 - 168828 + T 74 -5.7 -4.67943 | opp_overlap 168805, overlap 168805 AAGTGCCCTAACGAA ACCTCCAGA TTTAAGT TCTGGAGGC TTTTCTATGTTAAAA TERM 249 168827 - 168805 - T 85 -9.2 -3.90291 | opp_overlap 168804 168805 AGTGCCCTAACGAAA CCTCCAGA TTTAAGT TCTGGAGG CTTTTCTATGTTAAA TERM 250 168805 - 168827 + T 79 -9.2 -3.40043 | opp_overlap 168805, overlap 168804 AGTGCCCTAACGAAA CCTCCAGA TTTAAGT TCTGGAGG CTTTTCTATGTTAAA stu0155 169414 - 168833 - | hypothetical protein stu0156 169983 - 170153 + | hypothetical protein stu0157 170240 - 170347 + | hypothetical protein TERM 251 170388 - 170355 - T 82 -9.7 -3.55604 | opp_overlap 170366, overlap 170366 GTAGCTAAGCAAATA GAGACAAAAAACGGC AGTT GCCGTTTCTTATATC AGAGAATCTAAAAAA TERM 252 170366 - 170377 + T 78 -7.2 -4.38927 | opp_overlap 170355 170366 AATAGAGACAAAAAA CGGC AGTT GCCG TTTCTTATATCAGAG TERM 253 170377 - 170366 - T 93 -7.2 -5.46276 | opp_overlap 170366, overlap 170355 AATAGAGACAAAAAA CGGC AGTT GCCG TTTCTTATATCAGAG TERM 254 170406 - 170425 + T 95 -6.5 -5.93252 | opp_overlap 170406 AGAATCTAAAAAAAA GTTAAGG CCGAAA CCTTAAC TTTTTTGTTTTTAAC TERM 255 170425 - 170406 - T 100 -7.2 -5.87688 | opp_overlap 170406 AGAATCTAAAAAAAA GTTAAGGC CGAA ACCTTAAC TTTTTTGTTTTTAAC stu0158 171176 - 170436 - | polar amino acid ABC uptake transporter ATP-binding protein stu0159 172726 - 171176 - | polar amino acid ABC uptake transporter substrate binding protein/membrane-spanning protein TERM 256 171715 - 171733 + g 71 -6 -4.15788 | opp_overlap 171725 ACCAACCGAAGATTT TTTGGAGC AAG GCTACAAA TTTATTAGCAGCCTT TERM 257 171884 - 171907 + g 70 -9 -3.22894 | AATAGTAGTCACTTG GCTAAAGAAG TTTC CTTTTTTAGC TTCATCAGTCTTATC uppP 172917 - 173783 + | undecaprenyl pyrophosphate phosphatase TERM 258 173794 - 173811 + T 84 -6.3 -5.06585 | opp_overlap 173790 173794 GATAAAAAATTGAAA GGATTTC GATT GAAGTCC TTTTTATCTGGTTTA stu0161 174144 - 173929 - | hypothetical protein mecA 174410 - 175159 + | adaptor protein rgpG 175163 - 176320 + | exopolysaccharide biosynthesis protein, glycosyltransferase TERM 259 176332 - 176344 + F 83 -4.8 -5.58179 | opp_overlap 176332 ATAAACATTTGAAAA GCCA AGCAA TGGC TTTTTTGTTATAATG TERM 260 176439 - 176429 - f 76 -2.6 -5.42259 | overlap 176437 CTATTTTCAAAAAAA TAAT GCA ATTA GCGAGCACATGCTCG TERM 261 176455 - 176440 - f 79 -10.4 -2.83642 | opp_overlap 176440, overlap 176437 AAAATAATGCAATTA GCGAGC ACAT GCTCGC TGTATATATGGAAAA TERM 262 176440 - 176455 + F 80 -10.4 -3.05022 | opp_overlap 176437 176440 AAAATAATGCAATTA GCGAGC ACAT GCTCGC TGTATATATGGAAAA stu0164 176448 - 177251 + | ABC transporter ATP binding protein stu0165 177288 - 178550 + | hypothetical protein TERM 263 179104 - 179092 - gf 71 -6.3 -4.23723 | TAAGATTAGTGAAAA GACAA AAT TTGTC AGTCTGGCTCAGGTT nifS1 178604 - 179836 + | aminotransferase (class V), putative nifU 179802 - 180257 + | NifU family protein stu0168 180337 - 181755 + | hypothetical protein TERM 264 181814 - 181835 + F 86 -5.2 -5.67283 | opp_overlap 181814 TTCAAAATACTATAA GGTTAAGA TATACT TCTTAGCC TTTTTTGTTTGGATT stu0169 182039 - 182245 + | oligopeptide ABC uptake transporter substrate binding protein, truncated stu0170 182220 - 183074 + | oligopeptide ABC uptake transporter substrate binding protein, truncated stu0171 183064 - 183273 + | oligopeptide ABC uptake transporter membrane-spanning protein, truncated TERM 265 183550 - 183569 + G 77 -9.4 -3.56378 | opp_overlap 183548, overlap 183548 AAACTATCAGATAGC CTACCATT CTGG AATGGTAG TATTGTCTTTTCAGG stu0172 183403 - 183951 + | oligopeptide ABC uptake transporter membrane-spanning protein, truncated stu0173 183932 - 184318 + | oligopeptide ABC uptake transporter membrane-spanning protein, truncated stu0174 184290 - 184532 + | oligopeptide ABC uptake transporter ATP binding protein, truncated stu0175 184562 - 184765 + | oligopeptide ABC uptake transporter ATP binding protein, truncated stu0176 184743 - 185141 + | oligopeptide ABC uptake transporter ATP binding protein, truncated stu0177 185036 - 185374 + | oligopeptide ABC uptake transporter ATP binding protein, truncated optF 185376 - 186314 + | oligopeptide ABC uptake transporter membrane-spanning protein TERM 266 186348 - 186325 - f 74 -5.2 -4.71482 | opp_overlap 186325 ATTAAACTGTAAAAA GGTGGTGATT CTCT AGTCACCTCC TTTTTATTAGTAAGC TERM 267 186325 - 186348 + F 88 -7.4 -5.1356 | opp_overlap 186325 ATTAAACTGTAAAAA GGTGGTGATT CTCT AGTCACCTCC TTTTTATTAGTAAGC stu0179 186536 - 186724 + | hypothetical protein hslO 186850 - 187737 + | Hsp33-like chaperonin TERM 268 188297 - 188315 + GF 73 -8.8 -3.16668 | opp_overlap 188281 188278 ACTGGTCACTGTGAC CACGAGAC GCT GGCTCGTG TTGCTAAAGCTATTA nifR 187655 - 188707 + | putative transcriptional regulator TERM 269 188715 - 188748 + F 83 -11.1 -2.9627 | opp_overlap 188716, overlap 188718 TACGATGAAATAGAA AGAGCCCTGTTAG TATGTACT CTAACAGGGCTCA TATATAATAAATTGC TERM 270 188747 - 188716 - f 100 -14.6 -4.37506 | opp_overlap 188715 188718 ACGATGAAATAGAAA GAGCCCTGTTAG TATGTACT CTAACAGGGCTC ATATATAATAAATTG TERM 271 188718 - 188745 + F 83 -11.4 -2.71447 | opp_overlap 188716, overlap 188715 GATGAAATAGAAAGA GCCCTGTTAG TATGTACT CTAACAGGGC TCATATATAATAAAT stu0182 189057 - 189773 + | MutR family transcriptional regulator TERM 272 189984 - 190000 + F 81 -5.8 -4.96106 | overlap 189980 CATTGCAAAATCTGA GGGGAC TTAGT GTTCCC TTTTTCGTGTTTGTA TERM 273 190496 - 190513 + G 78 -7.1 -4.40173 | overlap 190487 TTAATTGGTGGTACT CCTATTA TGGA TAATAGG TCTTTTTTTGAGTTA stu0183 190043 - 192382 + | putative protein kinase TERM 274 193203 - 193217 + G 72 -8.6 -3.46302 | overlap 193202 AGTTGGGGTCTTATG CTGTGA CTA TCACAG TCTTTGAGTCTATTG TERM 275 193464 - 193477 + G 71 -6.7 -4.00589 | CCATTGTCGAAGAGC GACAG AACG CTGTC TTTAGTATCTTTTCA stu0184 192383 - 193651 + | hypothetical protein TERM 276 193670 - 193687 + F 85 -4.1 -5.67529 | TATTATCATTTTTAA GTCTAGC TGCG GTTGGAC TTTTTATTTTTCCTT adcR 193745 - 194200 + | zinc transport transcriptional repressor TERM 277 194501 - 194519 + GF 70 -8.1 -3.1634 | TGTCAAGTCAGGTCG CTACCCC CATAA GGGGTGG TTCCGTCGTTTGAAC TERM 278 194574 - 194538 - gf 73 -6.8 -4.15044 | opp_overlap 194543, overlap 194541 CGTCGTTTGAACAAA CATGACT-TAGAGCATGT TCA ACGTGCTCTAGAGTC-TG TAGGTATGTGGGAAA TERM 279 194572 - 194541 - gf 76 -9.6 -2.80244 | gap 1, opp_overlap 194543, overlap 194538 CGTTTGAACAAACAT GACT-TAGAGCATGT TCA ACGTGCTCTAGAGTC TGTAGGTATGTGGGA adcC 194202 - 194909 + | zinc (Zn2+) ABC uptake transporter ATP-binding protein adcB 194875 - 195714 + | zinc (Zn2+) ABC uptake transporter membrane-spanning protein TERM 280 195727 - 195746 + F 95 -8.6 -4.95758 | opp_overlap 195726 195721 195727 TAAATAATAGAAAAG GAGCTTGA GAAA TCGAGCTC TTTTTGTGATATACT mleP 195876 - 196814 + | AEC family permease stu0189 196929 - 197360 + | glucose PTS enzyme component IIABC, truncated stu0190 197474 - 197590 + | glucose PTS enzyme component IIABC, truncated TERM 281 198365 - 198351 - gf 75 -10 -2.5805 | overlap 198350 ACGATTCTTCAGAAT CTGCTG GAT CAGCAG GTGCTGGGACAAGCT stu0191 197606 - 198532 + | glucose PTS enzyme component IIABC, truncated stu0192 198483 - 199151 + | glucose PTS enzyme component IIABC, truncated TERM 282 199198 - 199168 - f 74 -9.1 -3.04652 | gap 1, opp_overlap 199174 199189, overlap 199167 199174 TTGTTAAATAATAAT CAAGCA-GACAGCC CAGG GGCTGTCTTGTTTG TAAAAGACCTTGTTG TERM 283 199174 - 199191 + F 93 -11.3 -4.06419 | opp_overlap 199168 199167 199174, overlap 199189 AATAATAATCAAGCA GACAGCC CAGG GGCTGTC TTGTTTGTAAAAGAC TERM 284 199191 - 199174 - f 83 -11.3 -2.91645 | opp_overlap 199174 199189, overlap 199168 199167 AATAATAATCAAGCA GACAGCC CAGG GGCTGTC TTGTTTGTAAAAGAC stu0193 199192 - 200064 + | hypothetical protein pgi 200149 - 201522 + | glucose-6-phosphate isomerase TERM 285 201534 - 201551 + F 93 -7.7 -5.55695 | opp_overlap 201533 201536 GTAATTCTCAGATAG GATCAGC TTTG GCTGGTC TTTTTTCTGTTATTA TERM 286 201694 - 201671 - f 85 -6.8 -5.29208 | opp_overlap 201676, overlap 201674 201686 201689 AAAAGAAAAAACAAA TCAGAGATGT TATA ACATCTCTTA GAAGAGGTGAATCCA TERM 287 201691 - 201674 - f 75 -8.5 -3.37944 | opp_overlap 201676, overlap 201671 201686 201689 AGAAAAAACAAATCA GAGATGT TATA ACATCTC TTAGAAGAGGTGAAT stu0195 201710 - 202426 + | hypothetical protein TERM 288 202437 - 202459 + F 76 -4.2 -5.02502 | overlap 202453 TGTAATCTCATTAAA CATTTTCTGT CTT GTAGAAAGTG TTTTTCTGTGGTCTG yajC 202552 - 202890 + | preprotein translocase, YajC subunit, putative uppS 203019 - 203768 + | undecaprenyl pyrophosphate synthetase cdsA 203781 - 204575 + | phosphatidate cytidylyltransferase (CDP-diglyceride synthase) TERM 289 205447 - 205463 + G 78 -10.9 -3.04263 | overlap 205438 205420 TTTTTAGGTGTCTCT CCTGTCT TAA AGACAGG TCTTAAAGATAAGAT TERM 290 205464 - 205477 + G 71 -3.9 -4.84363 | TGTCTTAAAGACAGG TCTTA AAGA TAAGA TTTTTGGTGGTTTCC eep 204592 - 205854 + | hypothetical protein TERM 291 205954 - 205941 - g 74 -5.3 -4.72863 | TGAAACAAAGTAAAA TGTTG ATTC CAACA CTTCGTGAAATGCCA proS 205925 - 207787 + | prolyl-tRNA synthetase TERM 292 207798 - 207823 + F 93 -6.9 -5.61881 | CTTAATACTAAAAAA TCTTTTCTTGC AGAG GCGGGAAGAGA TTTTTCTTTTTAAAC TERM 293 208138 - 208160 + F 83 -7.7 -4.65895 | opp_overlap 208138, overlap 208135 TCAAGATGCAGAGAA CCAGTTGGG TCTGT CCTAGCTGG TTTTTCCATGCCGCG TERM 294 210307 - 210297 - g 71 -4 -4.94902 | GAAGTACGACAAAAA TTGA AAA TCAA TCCTAACAAATCCTT stu0201 208365 - 210344 + | ABC transporter substrate binding/membrane-spanning protein TERM 295 210390 - 210378 - g 74 -6.3 -4.46757 | AACAGATTCATAAAA CCTTT GAA AAAGG CACAGTCAATGAAAA stu0202 210344 - 211147 + | ABC transporter ATP binding protein TERM 296 211164 - 211189 + F 100 -9.9 -5.49234 | opp_overlap 211164 ATACTAGAAAAAAAA CTATCCAAAGT TTAG ATTTTGGATAG TTTTTTCTTGACTAT TERM 297 211189 - 211164 - f 100 -7.7 -6.00086 | opp_overlap 211164 ATACTAGAAAAAAAA CTATCCAAAGT TTAG ATTTTGGATAG TTTTTTCTTGACTAT groES 211315 - 211602 + | co-chaperonin GroES TERM 298 212361 - 212342 - g 73 -9.4 -3.14671 | opp_overlap 212341, overlap 212340 CAAATATCCAAGATA TTCTTCCA CTCT TGGAAGAA GTGCTTAAGACCAGT TERM 299 212836 - 212824 - g 77 -7.7 -4.27211 | opp_overlap 212823 212828, overlap 212815 CTTAAAGAAATGAAA CTTCG TAT CGAAG ATGCTCTTAATGCTA TERM 300 213251 - 213225 - g 74 -5.1 -4.6971 | gap 1 CAAACCCGAACAAAA GGCTCCAGCAGC GCCA GCTAC-GGATCC AGGAATGATGGGTTA groEL 211651 - 213270 + | chaperonin GroEL TERM 301 213358 - 213313 - f 71 -7.7 -3.61646 | opp_overlap 213316, overlap 213309 213314 213326 AAGTCGAGAAATGAA CTGCACCCCAAAAGTTAGA CAGAAAAC TCTAACTTTTGGGGTGTTT TTATTATGAAACTAA TERM 302 213357 - 213314 - f 83 -11.2 -2.76265 | opp_overlap 213316, overlap 213313 213309 213326 AGTCGAGAAATGAAC TGCACCCCAAAAGTTAGA CAGAAAAC TCTAACTTTTGGGGTGTT TTTATTATGAAACTA TERM 303 213316 - 213355 + F 100 -18.2 -5.18726 | opp_overlap 213314 213313 213309 213326 TCGAGAAATGAACTG CACCCCAAAAGTTAGA CAGAAAAC TCTAACTTTTGGGGTG TTTTTATTATGAAAC stu0205 213403 - 213822 + | hypothetical protein stu0206 213829 - 214209 + | hypothetical protein TERM 304 214476 - 214444 - g 100 -12.2 -4.74084 | opp_overlap 214444 AAAGTAAAATTAAAA GGACTTAGTCCTGT GCAGT ACAGAACTAAATCC TTTGGATAAATTAGT TERM 305 214444 - 214476 + G 73 -8.5 -3.68886 | opp_overlap 214444 AAAGTAAAATTAAAA GGACTTAGTCCTGTG CAG TACAGAACTAAATCC TTTGGATAAATTAGT stu0207 214267 - 214485 + | hypothetical protein stu0208 214905 - 214678 - | hypothetical protein TERM 306 215249 - 215263 + r 83 -2.1 -5.9003 | CGTCTTTTCTACAGT CTCTT TTTGT GAGAG TTTTTTTGTTGCTTT TERM 307 215320 - 215334 + r 93 -10 -4.23045 | CAAACTCGCCTCGAT TGGCTG CTT CAGCCA TTTCTTGGATACTTG stu0209 215801 - 215496 - | hypothetical protein TERM 308 215783 - 215761 - G 89 -4.7 -5.55698 | TATAATCTAAAAAAA CGCTGGTGG TAGGC CCGCAAGCG TGTGAAATAGTTTTT stu0210 215992 - 215801 - | hypothetical protein stu0211 217185 - 216313 - | ribosomal large subunit pseudouridine synthase D pbp2A 217251 - 219578 + | penicillin-binding protein 2A TERM 309 219765 - 219753 - g 70 -2.7 -5.16472 | AAAAATTGTAAAAAA TATAC CTT GCATA AAGAAACAAGATAGG rpmG 219627 - 219779 + | 50S ribosomal protein L33 secE 219788 - 219964 + | preprotein translocase subunit SecE TERM 310 219983 - 219996 + F 82 -4.5 -5.58179 | AAACATAAAAAGAGT GGGCA TGCT TGCTC TTTTTTGTTATAATA nusG 220161 - 220700 + | transcription antitermination protein NusG TERM 311 220735 - 220713 - f 72 -4.8 -4.80396 | TAAAATAGTCAAAAA GGTTGGAACC AGG AGCTTCAACC TCGTAAGACTATCTC TERM 312 220762 - 220809 + F 88 -7.3 -4.83615 | opp_overlap 220770 TCTCATTAAACATGG GGGAGAGAC-TAGAATCTAGATT TTTA AATTTAG-TTCTGTGTCACTCCC TTTTTCTAACGGATG stu0216 220822 - 221310 + | hypothetical protein TERM 313 221320 - 221341 + T 80 -5.1 -5.26875 | overlap 221338 CTTTAGAAATTTTTG GTCTTCTTC GAGA GAGGAGGGC TTTTTTCATTGAAAA TERM 314 221357 - 221386 + T 81 -9.3 -3.82191 | opp_overlap 221359 221364, overlap 221338 221359 221364 TTTTTTCATTGAAAA AAGAAAAGGACCC TTTG GGGACCTTTTCTC TTGTTCTAAAATTCG TERM 315 221359 - 221384 + T 90 -11.9 -3.49226 | opp_overlap 221359 221364, overlap 221338 221357 221364 TTTTCATTGAAAAAA GAAAAGGACCC TTTG GGGACCTTTTC TCTTGTTCTAAAATT TERM 316 221384 - 221359 - T 100 -11.9 -5.08824 | opp_overlap 221338 221359 221357 221364, overlap 221364 TTTTCATTGAAAAAA GAAAAGGACCC TTTG GGGACCTTTTC TCTTGTTCTAAAATT TERM 317 221364 - 221379 + T 77 -6 -4.82162 | opp_overlap 221359 221364, overlap 221338 221359 221357 ATTGAAAAAAGAAAA GGACCC TTTG GGGACC TTTTCTCTTGTTCTA TERM 318 221379 - 221364 - T 86 -6 -5.43553 | opp_overlap 221338 221364 221359 221357, overlap 221359 ATTGAAAAAAGAAAA GGACCC TTTG GGGACC TTTTCTCTTGTTCTA stu0217 221783 - 221442 - | hypothetical protein stu0218 222272 - 222036 - | hypothetical protein stu0219 223011 - 222247 - | DeoR family transcriptional regulator TERM 319 223028 - 223044 + H 73 -4.5 -4.95854 | AGTCACCTGCTTTCT GATATTA GTA TAGTATC TTTTTACGTTTTTTG leuS 223185 - 225686 + | leucyl-tRNA synthetase TERM 320 225808 - 225776 - g 74 -6.3 -4.44667 | opp_overlap 225780, overlap 225780 TTGTGGAATAAGAAA TGAATCCTCTAGAGT TAG ACTCTGGAGGATTTT TTACTCTTCTTGACA TERM 321 225780 - 225804 + G 100 -13.7 -5.31545 | opp_overlap 225780 225776 GGAATAAGAAATGAA TCCTCTAGAGT TAG ACTCTGGAGGA TTTTTTACTCTTCTT TERM 322 225804 - 225780 - g 88 -11.5 -3.76065 | opp_overlap 225780, overlap 225776 GGAATAAGAAATGAA TCCTCTAGAGT TAG ACTCTGGAGGA TTTTTTACTCTTCTT stu0221 225775 - 225966 + | hypothetical protein stu0222 225997 - 226134 + | hypothetical protein TERM 323 226217 - 226237 + T 71 -6.3 -4.09243 | opp_overlap 226217 226215 AGCAGCAAGAACATA TTGAAAAAG CCA TTTTTTCAA TTTTAAGAAACTATA TERM 324 226315 - 226338 + T 78 -7.5 -4.09511 | opp_overlap 226315 CAGGTGTGGCGAGAA TTACCGTGG AAAAAA TCACGGTAA TTTTAAAACCATATT tnp1239 227495 - 226455 - | IS1239 transposase TERM 325 226538 - 226555 + g 74 -4.9 -4.81082 | gap 1, opp_overlap 226538 AATTTTCGATAAAAG CGACTTCT TTC AGA-GTCG TTTTCTTGGTTCCTT TERM 326 227137 - 227149 + g 70 -3.4 -4.96028 | ATTTTCTCTTTCATT TCCT TCGTT AGGA TTATTTTTTTTACCG TERM 327 227527 - 227550 + H 75 -9.6 -2.74012 | opp_overlap 227528, overlap 227532 227538 TGTTTTGTCAGCTAA ACCAAGGCTA TTAT TAGCCTTGGC TACTTAGCCTAATAG TERM 328 227549 - 227528 - H 95 -13.1 -3.64703 | opp_overlap 227527 227532 227538 GTTTTGTCAGCTAAA CCAAGGCTA TTAT TAGCCTTGG CTACTTAGCCTAATA TERM 329 227742 - 227706 - gH 100 -10.3 -4.24294 | opp_overlap 227706 227710 227712 227716, overlap 227710 227716 ATCAATGACTTAAAA CCAATAGAAACATATCG AGT CGAAATGTTTCTATCTG ATTATTATTGTATCA TERM 330 227738 - 227710 - gH 91 -11.9 -3.70007 | opp_overlap 227710 227706 227712 227716, overlap 227706 227716 ATGACTTAAAACCAA TAGAAACATATCG AGT CGAAATGTTTCTA TCTGATTATTATTGT TERM 331 227710 - 227738 + GH 85 -11.9 -3.07232 | opp_overlap 227706 227710 227716, overlap 227706 227712 227716 ATGACTTAAAACCAA TAGAAACATATCG AGT CGAAATGTTTCTA TCTGATTATTATTGT TERM 332 227712 - 227736 + GH 77 -10.1 -3.07845 | opp_overlap 227710 227706 227716, overlap 227710 227706 227716 GACTTAAAACCAATA GAAACATATCG AGT CGAAATGTTTC TATCTGATTATTATT stu0224 227640 - 228152 + | acyl-CoA thioesterase 1, truncated stu0225 228103 - 228861 + | acyl-CoA thioesterase 1, truncated TERM 333 228979 - 229000 + F 80 -6.6 -4.72272 | opp_overlap 228979 ATGAATAGAAATGAA GAGTAGTC CATCAA GGCTACTC TTTTTCGTCAAAAGA TERM 334 230291 - 230271 - g 75 -10.5 -2.94412 | overlap 230268 230274 GCTAAGGGGAAATCA GAAGGTGAC TAT ATCACCTTC GCAGACACGGATGTT pncB 229155 - 230609 + | nicotinate phosphoribosyltransferase TERM 335 230736 - 230759 + G 74 -9 -3.54424 | TGATCAAACATCCAT TCCTTAAAAC ATAT GTTTTAGGGA TTTCAGGAGGTCAGG nadE 230621 - 231442 + | NAD synthetase stu0228 231458 - 231898 + | hypothetical protein TERM 336 231907 - 231931 + F 100 -17.3 -4.75776 | TGAATAAGATTGTCG TACCCCTAGGT TTA ACCTAGGGGTA TTTTTAAATTGAATT pepC 232000 - 233337 + | cysteine aminopeptidase C TERM 337 233348 - 233380 + T 73 -8.7 -3.23899 | gap 1, opp_overlap 233354, overlap 233354 AATAAGAGGATATTT C-AAAAACACTGGA TAGAAT TCCAGTGTTTTTAG TTGACTTCATTAAAA TERM 338 233354 - 233373 + T 88 -7.9 -4.90013 | opp_overlap 233354, overlap 233348 AGGATATTTCAAAAA CACTGGA TAGAAT TCCAGTG TTTTTAGTTGACTTC TERM 339 233373 - 233354 - T 83 -7.9 -4.65168 | opp_overlap 233354 233348 AGGATATTTCAAAAA CACTGGA TAGAAT TCCAGTG TTTTTAGTTGACTTC TERM 340 233432 - 233412 - T 74 -6.2 -4.57569 | opp_overlap 233406 233412 TTATGGTTGTAAAAA GAGCTATC TAATG GATAACTC TTTTCAATTCCTTTT pbp1A 235777 - 233447 - | penicillin-binding protein 1A TERM 341 234203 - 234188 - G 79 -10.4 -3.58522 | opp_overlap 234188 ACCACCATTGGCAAA GGCTGC ATAG GCAGCC GCCATCTTCTCACTT TERM 342 235634 - 235617 - G 88 -8.5 -4.66318 | AGTAGTCCAATAAAA GCGTATT TTGC AATACGC CATCCTAAATTTTGA recU 236373 - 235777 - | Holliday junction-specific endonuclease stu0232 236450 - 236965 + | hypothetical protein stu0233 237074 - 237406 + | hypothetical protein TERM 343 237806 - 237827 + F 100 -12.3 -4.17048 | ATTGCATATAGGTGA GGCTGGGAC ACAT GTCTCAGCC TTCTTTTAGCAAGAA stu0234 237933 - 239105 + | hypothetical protein TERM 344 239148 - 239131 - g 71 -4.1 -4.95843 | overlap 239141 AGATAAAACACAAAA TGGCTAT GAAG AAAGCCA AGAGTTAGATTTCCA TERM 345 239306 - 239294 - g 77 -4.9 -4.85599 | GTTACCTCACAAAAA TTTTC AAA GAAAA TTGAAGCAGATGGCG stu0235 239108 - 240970 + | hypothetical protein TERM 346 240984 - 240999 + F 100 -9 -6.37666 | opp_overlap 240981 240986 AATAAAAATCGACGA CACTCC CTAG GGAGTG TTTTTTTTGTTTTAT TERM 347 241332 - 241305 - g 72 -3.5 -5.1101 | gap 1 GTACTATCTAAAAAA TGCTAAG-GAGG GCCAG CGTCTCTTAGCA AAATTAGAGGAGAAA snf 241081 - 244176 + | ATP-dependent RNA helicase stu0238 244332 - 245048 + | hypothetical protein TERM 348 245261 - 245248 - g 76 -2.4 -5.52384 | opp_overlap 245248 TTTCGATGAAAAAAA CATC ACTGAA GATG TTGAATTGATTGCTG TERM 349 245486 - 245455 - g 75 -5.9 -4.74132 | ACACTCTATGAAAAA CATCACAGATACG TCATAC CTTATCGGTGATG GAACAGGACGTGGTT murC 245060 - 246403 + | UDP-N-acetylmuramate--L-alanine ligase TERM 350 246412 - 246436 + F 71 -6.4 -4.21607 | gap 1 TATGTAATATATTGA GGGCTGTAGCG ATTT CGCT-CGGCTC TTTCTCTTGGATAGA stu0240 246489 - 246956 + | acetyltransferase pabC 247056 - 249032 + | aminodeoxychorismate lyase greA 249116 - 249598 + | transcription elongation factor GreA TERM 351 249680 - 249713 + F 100 -20.5 -5.26875 | TTTTTGATCTTTGTG GGAGTGAGGCAGAAC ATTT GTTCTGTCTCACTCC TTTTTTAGTTACCAG TERM 352 249795 - 249835 + F 86 -8.3 -4.78839 | opp_overlap 249774 249797, overlap 249797 AAGTTTTTTGAACTA AACCCCAAAAGTTAGACAG AAA CAATCTACCTTTTGGGGTG TTTTATTATGAAATT TERM 353 249833 - 249797 - f 100 -13.1 -3.90112 | opp_overlap 249797 249795, overlap 249774 GTTTTTTGAACTAAA CCCCAAAAGTTAGACAG AAA CAATCTACCTTTTGGGG TGTTTTATTATGAAA TERM 354 249797 - 249833 + F 93 -10.9 -4.00512 | opp_overlap 249774 249797, overlap 249795 GTTTTTTGAACTAAA CCCCAAAAGTTAGACAG AAA CAATCTACCTTTTGGGG TGTTTTATTATGAAA stu0243 250003 - 250095 + | hypothetical protein TERM 355 250483 - 250451 - g 100 -12.2 -4.69549 | opp_overlap 250451 AAGGTAAAACTAAAA GGACTTATTTCTGT GCAAT ACAGAACTAAGTCC TTTGTGTAAATTAAT TERM 356 250451 - 250483 + G 100 -12.9 -4.09509 | opp_overlap 250451 AAGGTAAAACTAAAA GGACTTATTTCTGTG CAA TACAGAACTAAGTCC TTTGTGTAAATTAAT stu0244 250142 - 250492 + | hypothetical protein TERM 357 250522 - 250537 + T 70 -4 -4.94222 | opp_overlap 250524, overlap 250524 TTTTTGGAATCAGTA TACTCT TCCA AGAGTG TTTTTGTAGCTTATT stu0245 251465 - 250548 - | OxaA-like protein precursor acyP 251830 - 251552 - | acylphosphatase TERM 358 252466 - 252449 - g 70 -2.7 -5.07107 | opp_overlap 252438, overlap 252438 252455 GAAACTTGTAAAAAA CAAGATT TACC AGTCTTG GCAACGACTCTCTCA spoU 251933 - 252670 + | rRNA methyltransferase TERM 359 253107 - 253093 - g 90 -8.6 -4.88687 | TTAAACAAAAAAGAA GAGGAT ATC ATCCTC AAACATATGTGGGGA stu0248 252772 - 253266 + | putative hydrolase stu0249 253300 - 253989 + | hypothetical protein TERM 360 253999 - 254014 + T 100 -9 -5.88197 | opp_overlap 253999 GACTAGTTAAAAAAA TCAGCC GTTC GGCTGA TTTTTTTGTGTTTAA TERM 361 254014 - 253999 - T 95 -9 -5.48825 | opp_overlap 253999 GACTAGTTAAAAAAA TCAGCC GTTC GGCTGA TTTTTTTGTGTTTAA stu0250 254396 - 254100 - | hypothetical protein stu0251 255109 - 254771 - | hypothetical protein lysA 255284 - 256549 + | diaminopimelate decarboxylase TERM 362 256550 - 256586 + T 100 -16.1 -2.87051 | opp_overlap 256557 256558, overlap 256555 256558 GATTTTGAAATTTAA CAAAAAAGGCTAGACCT AGG AGGTCTAGCTTATTTTG CTTTAATAATAACCG TERM 363 256555 - 256581 + T 100 -10.2 -4.59376 | opp_overlap 256557 256558, overlap 256550 256558 TGAAATTTAACAAAA AAGGCTAGACCT AGG AGGTCTAGCTTA TTTTGCTTTAATAAT TERM 364 256579 - 256557 - T 100 -10.6 -5.52096 | opp_overlap 256555 256550 256558, overlap 256558 AAATTTAACAAAAAA GGCTAGACCT AGG AGGTCTAGCT TATTTTGCTTTAATA TERM 365 256578 - 256558 - T 100 -14.1 -3.88817 | opp_overlap 256555 256550 256558, overlap 256557 AATTTAACAAAAAAG GCTAGACCT AGG AGGTCTAGC TTATTTTGCTTTAAT TERM 366 256558 - 256578 + T 100 -14.1 -4.39375 | opp_overlap 256558 256557, overlap 256555 256550 AATTTAACAAAAAAG GCTAGACCT AGG AGGTCTAGC TTATTTTGCTTTAAT stu0253 257118 - 256579 - | TetR/AcrR family transcriptional regulator TERM 367 256991 - 257010 + g 75 -2.8 -5.20216 | overlap 256995 GAATAGTAGTAGAAG GTTGGTCT GCTG AGACTTAC TTTTTTGATGATGTC stu0254 257359 - 257604 + | hypothetical protein TERM 368 257615 - 257634 + F 74 -5.7 -4.7173 | AATAATGGTGGGGGA GCTGGGA CGTGAA TCTCAGC TTTTTACATGTAATG glr 257670 - 258485 + | glutamate racemase TERM 369 258911 - 258887 - g 93 -10.1 -4.93547 | opp_overlap 258892 GCAACGAAGGAAAAA CCAAGGAGTTT CGG AAACTCTTTGG AAAGCTTGGTATTAA stu0256 258478 - 259452 + | fused deoxyribonucleotide triphosphate pyrophosphatase/unknown domain-containing protein stu0257 259434 - 259955 + | hypothetical protein stu0258 259952 - 260434 + | hypothetical protein TERM 370 260890 - 260906 + GF 73 -7.3 -3.96618 | TTCTCAGACTGGATG GAGCTTT GAA AGAGCTC TTATTTGGGATTAAA TERM 371 260935 - 260924 - gf 72 -4.4 -4.7254 | ATTTGGGATTAAAAA TGAC AATA GTCA GGGATTGATTTTGAG xerD 260388 - 261149 + | site-specific tyrosine recombinase XerD-like protein scpA 261149 - 261862 + | segregation and condensation protein A scpB 261855 - 262436 + | segregation and condensation protein B TERM 372 262715 - 262705 - g 75 -5.4 -4.81852 | opp_overlap 262705 TTATAATGAAGAAAA GGTA TAC TACC TTCTTAATAAACCAC rluB 262487 - 263254 + | ribosomal large subunit pseudouridine synthase B stu0263 263251 - 263502 + | hypothetical protein TERM 373 263485 - 263514 + T 89 -7.9 -5.37345 | opp_overlap 263486, overlap 263486 CTAAAACGTAAAAAA ACTCCCTTGGA CAATTGAA TCCAAGGGAGC TTTTTTATGCTTAAA TERM 374 263513 - 263486 - T 100 -12.1 -5.61824 | opp_overlap 263485 263486 TAAAACGTAAAAAAA CTCCCTTGGAC AATTGA ATCCAAGGGAG CTTTTTTATGCTTAA TERM 375 263486 - 263513 + T 90 -11.4 -3.81322 | opp_overlap 263486, overlap 263485 TAAAACGTAAAAAAA CTCCCTTGGA CAATTGAA TCCAAGGGAG CTTTTTTATGCTTAA trkH1 264964 - 263525 - | K+ transporter (Trk), membrane-spanning protein TERM 376 263645 - 263635 - G 79 -5.4 -4.85267 | opp_overlap 263635 ACAAAGGACTAAAAA TAGC GAA GCTA TCAGTTGTTCCAAGT trkA 266320 - 264971 - | potassium transporter peripheral membrane component tnp1239 267481 - 266441 - | IS1239 transposase TERM 377 266524 - 266541 + g 74 -4.9 -4.81082 | gap 1, opp_overlap 266524 AATTTTCGATAAAAG CGACTTCT TTC AGA-GTCG TTTTCTTGGTTCCTT TERM 378 267123 - 267135 + g 70 -3.4 -4.96028 | ATTTTCTCTTTCATT TCCT TCGTT AGGA TTATTTTTTTTACCG TERM 379 267513 - 267536 + H 75 -9.6 -2.74012 | opp_overlap 267514, overlap 267518 267524 TGTTTTGTCAGCTAA ACCAAGGCTA TTAT TAGCCTTGGC TACTTAGCCTAATAG TERM 380 267535 - 267514 - H 95 -13.1 -3.64703 | opp_overlap 267513 267518 267524 GTTTTGTCAGCTAAA CCAAGGCTA TTAT TAGCCTTGG CTACTTAGCCTAATA TERM 381 268137 - 268151 + G 74 -5 -4.82128 | overlap 268139 AGAGGTCTATGCTGA TGGTGA GGA TCACTA TTTTATGTTTGGTCG stu0267 267808 - 268362 + | rRNA methyltransferase TERM 382 268436 - 268449 + F 95 -6.7 -5.84432 | opp_overlap 268436 TCCATAAATTAAGAA CCTTG TCAT CAAGG TTTTTTTATGTTATC TERM 383 268638 - 268666 + G 95 -6.2 -5.60993 | AAATCCATTGGGAAC TTCTTTCAAATT GTTAA AATTTGGAGGAA TTTTTTTATGACAAA stu0268 268596 - 269231 + | hypothetical protein stu0269 269234 - 269884 + | hypothetical protein TERM 384 269913 - 269887 - f 100 -9.6 -5.13648 | opp_overlap 269890 269909, overlap 269890 CAAACAGAAATAAAA CAATATGCAGTT CTG AACTGCATATTT TTGTTGGATAATCAA TERM 385 269890 - 269910 + F 100 -11.3 -5.11063 | opp_overlap 269887 269890, overlap 269909 ACAGAAATAAAACAA TATGCAGTT CTG AACTGCATA TTTTTGTTGGATAAT TERM 386 269910 - 269890 - f 100 -11.3 -4.60302 | opp_overlap 269890 269909, overlap 269887 ACAGAAATAAAACAA TATGCAGTT CTG AACTGCATA TTTTTGTTGGATAAT TERM 387 270545 - 270528 - g 70 -8.5 -3.35912 | GAGGAGATATATGAA GACTTGT TTGA ACAAGTC AAAAGGAAGAGGAAA TERM 388 270580 - 270592 + G 74 -6.3 -4.36862 | overlap 270577 CAACTAACGATTTAT TAGTC ATT GACTA TTATTTCTTTCATCT plcR 270090 - 270989 + | transcriptional regulator TERM 389 270995 - 271016 + F 100 -9.5 -5.47399 | opp_overlap 270994 TGGTTTATAGAAATG GTGGTGACA TAAA TGTCACTAC TTTTTTTAGGGTTAA stu0271 271164 - 271388 + | peptide-2 ABC transporter ATP binding/membrane-spanning protein truncated stu0272 271419 - 272084 + | peptide-2 ABC transporter ATP binding/membrane-spanning protein truncated TERM 390 272248 - 272232 - g 73 -6.7 -4.24404 | ATTGAAACTTTAAAA TCTTTAA GAG TTAAAGA GAGACGTTACCAAGA stu0273 272115 - 272405 + | peptide-2 ABC transporter ATP binding/membrane-spanning protein truncated stu0274 272427 - 272834 + | peptide-2 ABC transporter ATP binding/membrane-spanning protein truncated stu0275 272840 - 273259 + | peptide-2 ABC transporter ATP binding/membrane-spanning protein truncated stu0276 273367 - 273684 + | membrane protein TERM 391 273926 - 273914 - T 71 -6.3 -4.23781 | GCTAGCAAAAGTAAA GAGTA GGG TACTC AACAAACGGAGGCCC stu0277 274971 - 274171 - | urease cluster protein, truncated TERM 392 274968 - 274982 + g 87 -8.6 -4.54727 | opp_overlap 274967 TTGGTGAAAAATATT CCAAGA GTT TCTTGG TTTTGGTTTGAAGAC ureI 275472 - 275987 + | urea channel ureA 276012 - 276314 + | urease subunit gamma ureB 276326 - 276637 + | urease subunit beta TERM 393 277305 - 277295 - g 73 -6.8 -4.14345 | GAAGAGCAAATTAAA GCTG GTG CAGC AGGAATTAAGACACA ureC 276653 - 278371 + | urease subunit alpha TERM 394 278390 - 278415 + F 75 -4.7 -4.89567 | opp_overlap 278389 278392 AAACGCTATATACAT GAGGCTGGA TTTTTTCC TCCAACCTC TTTTGTATTTTACAG ureE 278512 - 278964 + | urease accessory protein UreE ureF 278954 - 279667 + | urease accessory protein ureG 279697 - 280311 + | urease accessory protein ureD 280313 - 281152 + | urease accessory protein TERM 395 281297 - 281277 - g 100 -8.3 -5.65177 | ACACTGATAAAAAAA CGATTCCTA TGT TGGGAATCG GGACTTCCTTGTCCT TERM 396 281473 - 281491 + G 71 -5.2 -4.56961 | overlap 281489 TGATGGTGGGATTTT GGCCTTTG GTG CGAATGCC TTTTGTATGGCTGTT cbiM 281156 - 282133 + | cobalt transport protein CbiM stu0289 282130 - 282909 + | ABC transporter membrane-spanning protein stu0290 282911 - 283624 + | ABC transporter ATP-binding protein TERM 397 283634 - 283659 + F 93 -8.4 -5.72622 | opp_overlap 283634 TATTAATAAGGATAA GTAGGAAATC GTTCTA GGTTTCCTAC TTTTTTCTTTGTCAA TERM 398 283825 - 283841 + G 77 -8.7 -3.96298 | GGAATTACGGGTGTA GCCATTG CTT CAGTGGC TTTGCTTGCTGCATG stu0291 283789 - 284637 + | ABC transporter substrate binding protein pps 284827 - 287718 + | non-ribosomal peptide synthetase stu0293 287715 - 289361 + | hypothetical protein stu0294 289387 - 290595 + | drug:H+ antiporter-3 (DHA3) family protein stu0295 291170 - 290976 - | hypothetical protein TERM 399 291338 - 291354 + G 77 -8.7 -3.96298 | GGAATTACGGGTGTA GCCATTG CTT CAGTGGC TTTGCTTGCTGCATG stu0296 291302 - 292150 + | polar amino acid ABC uptake transporter substrate binding protein stu0297 292310 - 293212 + | ABC transporter substrate binding protein stu0298 293273 - 293755 + | succinyl-diaminopimelic descuccinlyasadipeptidase, truncated stu0299 293813 - 294178 + | succinyl-diaminopimelic descuccinlyasadipeptidase, truncated stu0300 294263 - 294646 + | succinyl-diaminopimelic descuccinlyasadipeptidase, truncated stu0301 294639 - 295706 + | polar amino acid ABC uptake transporter ATP binding protein stu0302 295706 - 296398 + | ABC transporter membrane-spanning protein TERM 400 296408 - 296424 + F 70 -2.2 -5.27399 | opp_overlap 296408 AAATAGAATTTGAAA GCCTAT TTATC AAAGGC TTTTTTCATATATTG TERM 401 296867 - 296839 - g 72 -9.5 -3.08211 | overlap 296836 296859 ATTTCCTTAAAATTA GGAGCAGCCTCAG CTA CTAAGGCGGCTGC ACCTCAAGGGGTCGG TERM 402 297541 - 297553 + G 70 -9.1 -3.14051 | overlap 297515 297539 GCCTCAGGTATTGCA GGAGG TTC CCTCC TCTTGGTACCCGTAG dctA 296521 - 297729 + | serine/threonine transporter SstT TERM 403 297744 - 297762 + F 100 -11 -5.0925 | opp_overlap 297742 GATAACTACTACATG GTCAGCCT GTT GGGCTGAC TTTTTGATTTTAGAG TERM 404 298066 - 298083 + G 75 -5.6 -4.7078 | CTGTCGAGTACTGGC CAAAGG GAACAA CCTTTG TTTTTCGGTAGTTGA stu0304 297882 - 298094 + | hypothetical protein stu0305 298127 - 298732 + | hypothetical protein stu0306 298742 - 298945 + | hypothetical protein stu0307 299045 - 299293 + | hypothetical protein stu0308 299329 - 299574 + | ABC transporter ATP binding protein, truncated stu0309 299630 - 301036 + | ABC transporter ATP binding protein, truncated stu0310 301029 - 301163 + | ABC transporter membrane-spanning protein, truncated stu0311 301142 - 301681 + | ABC transporter membrane-spanning protein, truncated TERM 405 301747 - 301731 - f 84 -5.9 -5.36441 | overlap 301732 GGTCGATACAAAAAA CGTACAT GGT ATGTACA CAAATCCTTGACTAA TERM 406 301746 - 301732 - f 70 -7.2 -3.81141 | overlap 301731 GTCGATACAAAAAAC GTACAT GGT ATGTAC ACAAATCCTTGACTA tkt 302032 - 304008 + | transketolase TERM 407 304028 - 304072 + T 100 -16.8 -2.78384 | opp_overlap 304030 304040, overlap 304030 304040 GTTTGAATTTTTAGA CACGTTAAAAAACATTGGTT ATAAG GACCAATGTTTTTTTACGTG TCTAATGGAGAAAGG TERM 408 304070 - 304030 - T 87 -12.9 -2.89742 | opp_overlap 304030 304028 304040, overlap 304040 TTGAATTTTTAGACA CGTTAAAAAACATTGGT TATAAGG ACCAATGTTTTTTTACG TGTCTAATGGAGAAA TERM 409 304030 - 304070 + T 89 -13.6 -2.94099 | opp_overlap 304030 304040, overlap 304028 304040 TTGAATTTTTAGACA CGTTAAAAAACATTGGTT ATAAG GACCAATGTTTTTTTACG TGTCTAATGGAGAAA TERM 410 304060 - 304040 - T 79 -5.5 -5.08169 | opp_overlap 304040 304030 304028, overlap 304030 AGACACGTTAAAAAA CATTGGT TATAAGG ACCAATG TTTTTTTACGTGTCT TERM 411 304040 - 304060 + T 86 -6.2 -5.51402 | opp_overlap 304030 304040, overlap 304030 304028 AGACACGTTAAAAAA CATTGGTT ATAAG GACCAATG TTTTTTTACGTGTCT trkA2 304928 - 304257 - | K+ transporter (Trk), NAD+ binding protein trkH2 306353 - 304968 - | K+ transporter (Trk), membrane-spanning protein gidB 307115 - 306402 - | glucose-inhibited division protein B stu0316 307406 - 307948 + | hypothetical protein rr01 308104 - 308793 + | response regulator (homolog to csrR/covR Spy) TERM 412 308842 - 308828 - g 78 -4.2 -5.33785 | opp_overlap 308828 308837 AACCATTAGAAAAAA GTTGAC CAT GACAAC TGCTGTGGTCTTCTT TERM 413 309006 - 309024 + G 89 -10.2 -4.15044 | opp_overlap 308996 GAAGAGTTGAGTCCA GAGCCGCT TTT AGCGGCCC TTTATTCACCGAAAA hk01 308790 - 310307 + | sensor histidine kinase (homolog to csrS/covS Spy) TERM 414 310347 - 310367 + F 71 -3.2 -5.20633 | AACTCTCAATCATGA GCACGTCT CGTTA AGGGGTGC TTTTTATGTGTTTTT TERM 415 310558 - 310573 + G 81 -7.6 -4.48987 | ACTACATTTGAGCGT GTGGAA GAAG TTCCAC TTTTAGTTGTCAAAA stu0319 310429 - 310908 + | transcriptional regulator NrdR dnaB 310905 - 312080 + | chromosome replication initiation / membrane attachment protein DnaB dnaI 312084 - 312986 + | primosomal protein DnaI TERM 416 313082 - 313064 - f 75 -8.2 -3.73435 | opp_overlap 313063 AAATGAAGAAAGGAA TCCCTAAT TTA ATCAGGGA CTTAAATATATGACA engA 313092 - 314402 + | GTP-binding protein EngA TERM 417 314443 - 314407 - T 89 -6.5 -5.67283 | opp_overlap 314409, overlap 314409 AACGTAAATAAAAAA GAGACCAACCAGAATAG AAT CTTTACGGGTTGGTCTT TTGGTATTGTAAGGA TERM 418 314441 - 314409 - T 93 -9.1 -4.45696 | opp_overlap 314409, overlap 314407 CGTAAATAAAAAAGA GACCAACCAGAATAG AAT CTTTACGGGTTGGTC TTTTGGTATTGTAAG TERM 419 314409 - 314441 + T 93 -9.1 -4.46656 | opp_overlap 314407 314409 CGTAAATAAAAAAGA GACCAACCAGAATAG AAT CTTTACGGGTTGGTC TTTTGGTATTGTAAG TERM 420 314615 - 314642 + T 79 -10 -3.18327 | opp_overlap 314616, overlap 314613 314612 314609 TAGGCTATACTAAAA ATGTGTTTAGGA GTAC TCCTAAACACAG TCATTGTTTTTCCCT TERM 421 314641 - 314616 - T 100 -13.5 -4.80882 | opp_overlap 314615 314613 314612 314609 AGGCTATACTAAAAA TGTGTTTAGGA GTAC TCCTAAACACA GTCATTGTTTTTCCC TERM 422 314652 - 314665 + T 74 -6.7 -4.37658 | ACACAGTCATTGTTT TTCCC TTCG GGGAA TTTTATGGAGAGGTT TERM 423 314753 - 314780 + T 91 -5.6 -5.9218 | ATATTGTTGTTGTGA CCATTGGGAC TTCCTGTT GTTCCGATGG TTTTTTTCTTGTCTA TERM 424 314842 - 314822 - T 95 -6.8 -5.88565 | opp_overlap 314822, overlap 314838 TTGACAACAAAAAAA GGCAGCCC TCAAT GGACTACC TCTCTTCCCAAGAGA TERM 425 315047 - 315081 + T 87 -11.5 -3.2918 | opp_overlap 315056 CAACAACAATGGTTG GGTTAAGGAGAGGGG AGAAA CCTCATTCCTTAACC TTGATATAAGTATAT TERM 426 315254 - 315237 - T 89 -6.3 -5.67283 | opp_overlap 315237 315239 AATCTAAACAAAAAA CACCATC CTAA AATGGTG TCTATACTACTATTT TERM 427 315276 - 315328 + T 100 -10.9 -4.63526 | opp_overlap 315287, overlap 315281 315287 CTACTATTTCTGCTT GCCAATTAAAAGACTTATCTCTATT CAA GATAGAGATAAGTCTTTTAGCTTCC TTTATTTATCATTGT TERM 428 315281 - 315323 + T 100 -18.2 -2.86414 | opp_overlap 315287, overlap 315276 315287 ATTTCTGCTTGCCAA TTAAAAGACTTATCTCTATT CAA GATAGAGATAAGTCTTTTAG CTTCCTTTATTTATC TERM 429 315287 - 315317 + T 100 -15 -4.33808 | opp_overlap 315287, overlap 315281 315276 GCTTGCCAATTAAAA GACTTATCTCTATT CAA GATAGAGATAAGTC TTTTAGCTTCCTTTA TERM 430 315317 - 315287 - T 100 -14.3 -4.4078 | opp_overlap 315287 315281 315276 GCTTGCCAATTAAAA GACTTATCTCTAT TCAAG ATAGAGATAAGTC TTTTAGCTTCCTTTA TERM 431 315485 - 315443 - T 100 -10.2 -5.19328 | gap 1, opp_overlap 315446, overlap 315446 ATTTCATAATAAAAA CACCCCCAAAAGTTAGA TTTTTTTCTG TCTAACTTTTGGGG-TG TCATATACAATGCTT TERM 432 315483 - 315446 - T 88 -13 -3.12342 | opp_overlap 315446, overlap 315443 TCATAATAAAAACAC CCCCAAAAGTTAGA TTTTTTTCTG TCTAACTTTTGGGG TGTCATATACAATGC TERM 433 315446 - 315483 + T 89 -13.7 -2.85999 | opp_overlap 315446 315443 TCATAATAAAAACAC CCCCAAAAGTTAGAT TTTTTTCT GTCTAACTTTTGGGG TGTCATATACAATGC stu0324 317178 - 315589 - | peptide-2 ABC transporter ATP binding/membrane-spanning protein stu0325 317950 - 317162 - | hypothetical protein TERM 434 317470 - 317494 + g 71 -6.5 -4.28111 | CTTTCCATAAATCAG TGTCTTGAGGA GTC TGTTCAAGACA TTTCTTCATAATCTC TERM 435 318153 - 318099 - H 79 -5.3 -5.19879 | gap 1 GTGTAAACACAAAAA GGAATAAATC-CGTTATAGTAGAGTT GCAA AACATTACTAGAAAGAGATTTATTCC TATGACTCAGTTTAC tnp1191 318122 - 319330 + | IS1191 transposase stu0328 319610 - 319377 - | hypothetical protein TERM 436 319762 - 319792 + r 76 -4.2 -5.08824 | gap 1 CCAAAAATATACGAG GAACTTGACT-TA TCATAT TAGAGTCAGGTTC TTTTTTGAATGAGAA TERM 437 319967 - 319940 - R 83 -4.8 -5.56372 | opp_overlap 319941, overlap 319941 AAAGTAAAATAAAAA CGAGGTCGGAAC AATT GTCTCAACCTCA TTTATTTATTTTGGT serS 321250 - 319973 - | seryl-tRNA synthetase TERM 438 321294 - 321272 - R 76 -2.7 -5.42198 | gap 1, overlap 321275 CTCCAAAAAATAAAA CAC-CCAGCA AAAG TGTTGGAGTG ACATGGGCCACGGTT stu0330 321833 - 321459 - | hypothetical protein TERM 439 321882 - 321902 + r 73 -8.3 -3.61527 | opp_overlap 321882, overlap 321877 TATAGCATAAGAAAA GAGTTCAGC TTT GCTAAACTC TTGCTCTTTTTACAT TERM 440 321902 - 321882 - R 100 -10.5 -4.82819 | opp_overlap 321882 321877 TATAGCATAAGAAAA GAGTTCAGC TTT GCTAAACTC TTGCTCTTTTTACAT manN 322823 - 321912 - | mannose PTS system component IID TERM 441 322670 - 322685 + g 70 -2.6 -5.14563 | CTGCGGCTTGGTCCT CTTTGT TAGT ATAAAG TTTTTTGATAGCAGG manM 323665 - 322838 - | mannose PTS system component IIC TERM 442 323696 - 323716 + r 70 -7 -3.87815 | TCTATTGAGTTGTCG TTAGTTGA ATTTA TCAACTAA TTTATCCGAATGAAG manL 324725 - 323733 - | mannose PTS system component IIAB TERM 443 324272 - 324295 + g 100 -13.2 -4.00756 | TAGCTCCTTGAGGTG CTGCAGCTTC TACA GGAGCTGCAG TTGTTTCCTCAGCTG TERM 444 324986 - 324952 - H 89 -8.8 -4.52589 | opp_overlap 324936 324963, overlap 324955 TCTTTTCAGATAAAA GAATTTAGATATAGCT TAA AGCTATATCTAAATAG AGAAAATGGGATTAA TERM 445 324983 - 324955 - H 100 -14.9 -4.38141 | opp_overlap 324963, overlap 324952 TTTCAGATAAAAGAA TTTAGATATAGCT TAA AGCTATATCTAAA TAGAGAAAATGGGAT TERM 446 325162 - 325146 - g 88 -8 -5.15969 | TTGCAATCCAAAAAA TGGGTC GACTT GACCCA CAAAATTAATGCGGA stu0334 325101 - 325832 + | hypothetical protein TERM 447 325839 - 325872 + T 100 -17.7 -4.07133 | opp_overlap 325839 325844, overlap 325844 TTACCTTAATCAGAA GAAAAGACACCGAAG AAAT TTTCGGTGTCTTTTC TTGTTTATAAAAGTA TERM 448 325872 - 325839 - T 100 -17 -3.51825 | opp_overlap 325839 325844, overlap 325844 TTACCTTAATCAGAA GAAAAGACACCGAA GAAATT TTCGGTGTCTTTTC TTGTTTATAAAAGTA TERM 449 325844 - 325867 + T 100 -11.8 -5.05116 | opp_overlap 325839 325844, overlap 325839 TTAATCAGAAGAAAA GACACCGAAG AAAT TTTCGGTGTC TTTTCTTGTTTATAA TERM 450 325867 - 325844 - T 100 -11.1 -4.84492 | opp_overlap 325844 325839, overlap 325839 TTAATCAGAAGAAAA GACACCGAA GAAATT TTCGGTGTC TTTTCTTGTTTATAA stu0335 326677 - 325877 - | hypothetical protein TERM 451 326844 - 326859 + H 78 -7.6 -4.16146 | TCTACGTGAGAATGT TCCGAA ATTA TTCGGA TTTTGACAATATTTT TERM 452 327151 - 327161 + G 83 -3.2 -5.67283 | TAATGCCTTCTTCAC CTAC ACA GTGG TTTTTTCTTTGGGTT TERM 453 327498 - 327509 + G 73 -2.2 -5.18297 | TAGGTTTGATTGGTC TTGC GATT GCGA TTTTCTTTATTGTTA stu0336 326897 - 328318 + | hypothetical protein stu0337 328590 - 329033 + | hypothetical protein TERM 454 329286 - 329296 + G 70 -5.4 -4.43309 | overlap 329283 CACGAAGACCAGTCA CATC GGT GATG TTTTCATTGCGGTTG stu0338 329026 - 329547 + | acetyltransferase TERM 455 329927 - 329912 - g 85 -9 -4.27062 | TGAAGCAAAACTAAA CTCAGC CTAT GCTGAG GGTGGGGCTGACTTA stu0339 329556 - 330782 + | transcriptional regulator TERM 456 330877 - 330900 + F 82 -9.6 -3.64198 | opp_overlap 330875 330877 AGAAATAACGAAAGA GAGGCGGAGT AGAA ACTTCGTCTC TTGTGTGTGTAAGGA TERM 457 331234 - 331250 + G 73 -9.5 -3.16564 | opp_overlap 331232, overlap 331249 TCAGTATATCAATGT TAGCCTT TAC AAGGCTA TTGATAAAATCAAGA stu0340 330905 - 331396 + | hypothetical protein nusA 331462 - 332649 + | transcription elongation factor NusA TERM 458 332815 - 332801 - g 89 -5.6 -5.37171 | opp_overlap 332803, overlap 332803 AACAGGAAAGAAAAA TGGGCG AGG CGCCTA CATTAAATTGGATAA stu0342 332667 - 332966 + | hypothetical protein stu0343 332959 - 333261 + | hypothetical protein TERM 459 333770 - 333756 - g 70 -5.7 -4.37737 | overlap 333758 CAATCAAAAAGGAAA TGGTC AAGGG GACCA TAACAAAGGAAATCG TERM 460 333994 - 333982 - g 81 -5.5 -5.06414 | overlap 333983 333984 TTCCGTGAAGAAAAA GCTGC AGA GCAAC GCCGTGCAAAAGAAC infB 333280 - 336111 + | translation initiation factor IF-2 TERM 461 336151 - 336170 + F 74 -5.6 -4.73635 | overlap 336143 TATTTAGGGGACAAA GCTGGGTC ATCT GGCCTGGC TTTTGTTCCATTATA rbfA 336205 - 336558 + | ribosome-binding factor A TERM 462 336559 - 336594 + F 84 -12 -2.64747 | opp_overlap 336559 336566, overlap 336566 336567 GAGCGTAAAGACTAA GCGAAAACTCCTGTCA GTTA TGGCAGGAATTTTTGC GTTATAATAGAATAA TERM 463 336594 - 336559 - f 81 -9.8 -3.46285 | opp_overlap 336559 336566 336567, overlap 336566 GAGCGTAAAGACTAA GCGAAAACTCCTGTCA GTTA TGGCAGGAATTTTTGC GTTATAATAGAATAA TERM 464 336566 - 336587 + F 72 -5.1 -4.78752 | opp_overlap 336559 336566, overlap 336559 336567 AAGACTAAGCGAAAA CTCCTGTCA GTTA TGGCAGGAA TTTTTGCGTTATAAT TERM 465 336567 - 336586 + F 75 -8.6 -3.46167 | opp_overlap 336566 336559, overlap 336566 336559 AGACTAAGCGAAAAC TCCTGTCA GTTA TGGCAGGA ATTTTTGCGTTATAA stu0346 336623 - 336916 + | hypothetical protein stu0347 336900 - 337079 + | hypothetical protein TERM 466 337206 - 337229 + F 89 -7.5 -5.31275 | opp_overlap 337197 337200 337206, overlap 337208 ATCAATGAAGAAAGG TTCTTCCAC ATTCAA GTGGAAGGA TTTTTTATAATCAAA TERM 467 338177 - 338194 + G 71 -6.3 -4.24397 | opp_overlap 338177 338178, overlap 338178 AATCTAAAAAAATAT TTTGGCA AATC TGCCAAG TTTATGTTAGCTTAT murO 337454 - 338713 + | peptidoglycan branched peptide synthesis protein, alanine adding enzyme, putative TERM 468 338732 - 338765 + T 100 -17 -4.8384 | opp_overlap 338732 TTCGATAGTAAAAAA GCCAATTGAGATGA AAATCA TCATCTCAATTGGC TTTTTGAGTTATTTG TERM 469 338765 - 338732 - T 100 -17 -5.21709 | opp_overlap 338732 TTCGATAGTAAAAAA GCCAATTGAGATGA AAATCA TCATCTCAATTGGC TTTTTGAGTTATTTG murE 340227 - 338782 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase stu0350 340322 - 341953 + | polysaccharide transporter, putative TERM 470 341963 - 341980 + F 93 -7.7 -5.46706 | opp_overlap 341963 AAATAGTATTTGAAA CCAAGTC ATGT GGCTTGG TTTTTCTTTTCAACT stu0351 341977 - 342486 + | Ca2+, Mn2+-P-type ATPase, truncated TERM 471 342673 - 342696 + F 77 -6 -4.72846 | opp_overlap 342673 TAGTCATCTCAAAAA GCCTGGAACT TTTA AATTTCAGGC TTTTTCGGTGTCTGA TERM 472 342696 - 342673 - f 74 -6 -4.62783 | opp_overlap 342673 TAGTCATCTCAAAAA GCCTGGAACT TTTA AATTTCAGGC TTTTTCGGTGTCTGA TERM 473 343249 - 343235 - gf 78 -2.8 -5.4182 | opp_overlap 343235 AACGATAAAGAAAAA GAAGGA CGT TTCTTC TTTGAATACACCAAT metB1 342893 - 343987 + | cystathionine gamma-synthase stu0353 343956 - 345161 + | aminotransferase (class II) TERM 474 345185 - 345167 - f 79 -5.3 -5.093 | opp_overlap 345167 TGGAAAATAAGAAAA GTGATGC AAATG ACATCAC TTTAAATTTGAGGCA TERM 475 345599 - 345576 - g 72 -4.6 -4.67982 | gap 1, overlap 345577 345580 TGCTATTGAAGAAAA GGTAGTTACTG ATA CAGAAACT-CC AAAATCAGCTAAGTC stu0354 345445 - 345720 + | hypothetical protein TERM 476 345769 - 345755 - f 82 -4.3 -5.42198 | opp_overlap 345767 GTCTAAAAAATAAAA TTGGA TCCTT TCCAA AAACGTTTGCAAGTA TERM 477 345773 - 345793 + F 80 -4.7 -5.35365 | opp_overlap 345773, overlap 345767 345777 345779 GATCCTTTCCAAAAA CGTTTGC AAGTAAA GCAAGCG TTTTTCTTGTGTTTT upp 345850 - 346479 + | uracil phosphoribosyltransferase TERM 478 346469 - 346519 + F 93 -11.4 -3.95214 | opp_overlap 346477 346488, overlap 346488 346509 GTGACCGTCTGTTTG GTACAAAATAAGTTGAAAAGGGAA ATT TTCCCTTTTTTGCTTATTTAGCAC TCTTTTTAAATGAGT TERM 479 346511 - 346477 - f 72 -5.8 -4.36914 | opp_overlap 346469 346488 346509, overlap 346488 CTGTTTGGTACAAAA TAAGTTGAAAAGGGAA ATT TTCCCTTTTTTGCTTA TTTAGCACTCTTTTT TERM 480 346500 - 346488 - f 78 -7.7 -4.26634 | opp_overlap 346469 346488, overlap 346477 AAAATAAGTTGAAAA GGGAA ATT TTCCC TTTTTTGCTTATTTA TERM 481 346488 - 346500 + F 93 -7.7 -5.4148 | opp_overlap 346488 346477, overlap 346469 AAAATAAGTTGAAAA GGGAA ATT TTCCC TTTTTTGCTTATTTA TERM 482 346509 - 346543 + F 70 -8 -3.27768 | opp_overlap 346477, overlap 346469 TTTTCCCTTTTTTGC TTATTTAGCACTCTTT TTA AATGAGTGCTAAGGAA TATACTTTTTATTTG clpP 346617 - 347207 + | ATP-dependent Clp protease proteolytic subunit stu0357 347294 - 347743 + | hypothetical protein stu0358 347736 - 348017 + | hypothetical protein TERM 483 348029 - 348005 - f 83 -5.8 -5.1615 | opp_overlap 348005 TGAACATTTAAAAAA CTTTTCTCTT TAGCT AGGAGAAAAG TTTTTTTCTTAACTT TERM 484 348005 - 348029 + F 100 -8 -5.83226 | opp_overlap 348005 TGAACATTTAAAAAA CTTTTCTCTT TAGCT AGGAGAAAAG TTTTTTTCTTAACTT livJ 348174 - 349349 + | branched-chain amino acid ABC uptake transporter substrate-binding protein livH 349393 - 350277 + | branched-chain amino acid ABC uptake transporter membrane-spanning protein livM 350281 - 351231 + | branched-chain amino acid ABC uptake transporter membrane-spanning protein livG 351234 - 351998 + | branched-chain amino acid ABC uptake transporter ATP binding protein TERM 485 352594 - 352582 - g 74 -4.8 -4.67982 | opp_overlap 352582 TTTGATTGAACAAAA TGCC AATAA GGCA TTATCAATTGCGGAT livF 351998 - 352708 + | branched chain amino acid ABC uptake transporter ATP binding protein TERM 486 352734 - 352709 - f 85 -10.5 -3.4072 | opp_overlap 352709 352715 352716, overlap 352715 352716 TATCTTGGAGGATAA GAAAAAGCGCC CAAG GGCGTTTTTTC TATAGTCTCAGACTG TERM 487 352709 - 352734 + F 86 -12.7 -2.85668 | opp_overlap 352709 352715 352716, overlap 352715 352716 TATCTTGGAGGATAA GAAAAAGCGCC CAAG GGCGTTTTTTC TATAGTCTCAGACTG TERM 488 352728 - 352715 - f 76 -3.7 -5.22006 | opp_overlap 352709 352715 352716, overlap 352709 352716 GGAGGATAAGAAAAA GCGCC CAAG GGCGT TTTTTCTATAGTCTC TERM 489 352727 - 352716 - f 70 -7.2 -3.72119 | opp_overlap 352715 352709 352716, overlap 352715 352709 GAGGATAAGAAAAAG CGCC CAAG GGCG TTTTTTCTATAGTCT TERM 490 352716 - 352727 + F 93 -7.2 -5.40625 | opp_overlap 352716 352715 352709, overlap 352715 352709 GAGGATAAGAAAAAG CGCC CAAG GGCG TTTTTTCTATAGTCT stu0364 352862 - 353281 + | acetoin utilization protein, truncated stu0365 353226 - 353504 + | acetoin utilization protein, truncated TERM 491 353634 - 353664 + T 89 -7.1 -5.28166 | gap 2, opp_overlap 353634 TTTTAACAATAAAAA CAGAAGCTAGAACAT TAA ATGT-C-AGCTTCTG TTTTTGTTAGTTTTG TERM 492 353664 - 353634 - T 89 -7.1 -5.29445 | gap 2, opp_overlap 353634 TTTTAACAATAAAAA CAGAAGCTAGAACAT TAA ATGT-C-AGCTTCTG TTTTTGTTAGTTTTG cysM1 354603 - 353671 - | cysteine synthase stu0367 355325 - 354699 - | hypothetical protein TERM 493 355345 - 355333 - H 82 -3.5 -5.66684 | overlap 355325 TAATCCATAAAAAAA TTTTA TCA TAAAA AGGTGAATTCAAACA comFA 355380 - 356699 + | late competence protein required for DNA uptake TERM 494 357306 - 357324 + GF 76 -6.8 -4.43477 | ATTAGATGATTTAGA TGTCAAAG AAG TTTTGACA TTTTCCTTAGCTAGA comFC 356674 - 357342 + | late competence protein TERM 495 357405 - 357394 - f 83 -5.8 -5.13648 | TAAAGATAAAGAAAA CGCT AACA AGCG AGAAAGAGGTCTTTT stu0370 357421 - 357969 + | ribosomal protein S30AE family protein TERM 496 357967 - 357995 + F 93 -8.3 -5.40474 | opp_overlap 357967 TTGATTGAAGCAAAA TAATAAGTAGGGT ATA AACCTGCTTATTA TTTTTTTAAAAACCT TERM 497 357995 - 357967 - f 72 -6.1 -4.43477 | opp_overlap 357967 TTGATTGAAGCAAAA TAATAAGTAGGGT ATA AACCTGCTTATTA TTTTTTTAAAAACCT TERM 498 358223 - 358203 - f 79 -9.9 -3.22668 | opp_overlap 358201, overlap 358201 AAAGTGTTGACAAGA TATTCTATC TTT GATAGAATA TAGAAGTTGTCTCAA TERM 499 358337 - 358327 - f 71 -5.4 -4.52415 | overlap 358306 358305 358328 ATTTACAAGAATAAA TCGT CAG ACGA CGGTAATGAGTTAAC TERM 500 360482 - 360463 - f 91 -12.2 -3.66803 | opp_overlap 360462 360461 CGGCAAGAGGGCAAA CCGAAGAG TTTA CTCTTCGG GGTTGTAGGACTGCA TERM 501 360539 - 360524 - f 76 -7.6 -3.92604 | AAGATTATAGAAGAA CTACCT GGGA AGGTAG GCCAAAGAGAGTAAT TERM 502 363257 - 363269 + F 80 -10.5 -3.09327 | ACGCCTGATGTAGTT GGGGG TTG CCCCC TGTTAGATACGGTAG TERM 503 363797 - 363814 + F 95 -8.5 -5.67711 | GTACGGACTATATTT GAGTAAC TTAG GTTACTC TTTTTATTTTGTTTC ppaC 363881 - 364813 + | putative manganese-dependent inorganic pyrophosphatase TERM 504 364817 - 364829 + F 80 -2.6 -5.59357 | TTCAATGTGTAAAAA GGCT CTGTA GGCC TTTTTTTAGTGTGCT stu0373 364867 - 365526 + | hypothetical protein TERM 505 365540 - 365521 - T 87 -6.5 -5.40072 | opp_overlap 365501 365500 365508 365521 TTTTGTGCAAAAAAA GACTAGT TTTATT ACTAGTC TTTTTTATGACAACT TERM 506 365521 - 365540 + T 85 -6.5 -5.24531 | opp_overlap 365521, overlap 365501 365500 365508 TTTTGTGCAAAAAAA GACTAGT TTTATT ACTAGTC TTTTTTATGACAACT stu0374 366089 - 365556 - | hypothetical protein recX 366936 - 366160 - | recombination regulator RecX stu0376 366971 - 368335 + | TrmA family tRNA methyltransferase TERM 507 368370 - 368351 - f 74 -2.2 -5.40464 | opp_overlap 368351 368351, overlap 368345 CATGATAAACAAAAA TTTTCAAA ATTA TTGGAAAA TTTCTTTATTTTTCT TERM 508 369288 - 369274 - g 75 -10 -3.15544 | TTGGATTGGCACCAA GCCTTG TTA CAAGGC CAATTCCCACTAACA asnA 368434 - 369426 + | asparagine synthetase AsnA TERM 509 369432 - 369451 + T 88 -7.2 -4.99134 | opp_overlap 369432 369430 369435 TATCTTGTAAAAAGA GTACTAAC GAAA GTTAGTGC TTTTTGATTTGGAAT TERM 510 369569 - 369548 - T 74 -2.3 -5.40464 | gap 1, opp_overlap 369548, overlap 369552 CATTATAAAGAAAAA CCTATC-CTT TGT AGGAGATAGG TTATAAAATTAGTTG lysC 370936 - 369578 - | aspartate kinase TERM 511 370056 - 370042 - G 70 -8.6 -3.39449 | overlap 370038 CGCTAGCAATACCAA CAACTG GAA CAGTTG CTCCCTGGTGTTCAA TERM 512 371325 - 371301 - g 71 -3.7 -5.0065 | TACTTATAAACAAAA TAATCCCTTAC CCT ATAAAGAATTA ATTTTTCCTGATGTT stu0379 371068 - 371706 + | beta-phosphoglucomutase, putative phaB 371919 - 372710 + | enoyl-CoA hydratase stu0381 372814 - 373248 + | MarR family transcriptional regulator TERM 513 373570 - 373588 + G 71 -3.8 -4.85894 | opp_overlap 373573, overlap 373571 373573 CCTTCGCTTTTGATA TTACTGCG GCA TGCAGTGG TTTTGTCTTTGCTTT fabH 373248 - 374210 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 514 374353 - 374343 - g 73 -5.4 -4.59414 | opp_overlap 374343, overlap 374337 GCAGAAGAAGTAAAA GTAG AAA CTAC TTTTGACGAACTTGA acpP 374274 - 374498 + | acyl carrier protein TERM 515 374508 - 374536 + F 74 -6.1 -4.56969 | overlap 374509 AAATAAGCAGGGTAT AGAGAATATTCTT ATT AGGGATATTCTCA TTTGTTTATAAAATT TERM 516 374509 - 374535 + F 79 -9.6 -3.33097 | overlap 374508 AATAAGCAGGGTATA GAGAATATTCTT ATT AGGGATATTCTC ATTTGTTTATAAAAT TERM 517 375514 - 375481 - g 77 -6.1 -4.56978 | overlap 375483 TTCGTAAAGAAGAAA CGTGTGCAGAAATCT TGGA AGATTTGTACACAGG TGCTGCAAAGGTAAT fabK 374604 - 375569 + | trans-2-enoyl-ACP reductase II TERM 518 376327 - 376349 + G 71 -4.2 -4.98857 | gap 1, overlap 376330 AAAGCTCTTTTGGCT CGT-CAGGT GATGGA ACCTGTACG TTTTTATGATTCGAT fabD 375586 - 376512 + | acyl-carrier-protein S-malonyltransferase fabG 376525 - 377259 + | 3-ketoacyl-(acyl-carrier-protein) reductase fabF 377321 - 378553 + | 3-oxoacyl-(acyl carrier protein) synthase II accB 378557 - 379045 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 519 379351 - 379327 - g 75 -2.8 -5.22039 | opp_overlap 379327 GTTAAATTTAAAAAA CAAGTGGTTC CTGGT GACCAACTTG TTATGACAGCTAAGT fabZ 379042 - 379467 + | (3R)-hydroxymyristoyl-ACP dehydratase TERM 520 379481 - 379505 + F 76 -3.6 -5.27938 | gap 1 AGTGTTTTGTGAAAA TCCT-TCTGGC GACA GTCGGAAAGGA TTTTTCTTTAGACAT accC 379587 - 380957 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 521 381353 - 381342 - g 73 -2.2 -5.33866 | TAAAGGGACAAAAAA CAGC CTTG GCTA TCATGGATTCCAACT TERM 522 381726 - 381747 + G 80 -6.5 -4.71828 | overlap 381730 ATGATTTCCAAAAGG CCGAGTTCC TTCA GGAACATGG TTTTGTTGATGCCAT accD 380963 - 381829 + | acetyl-CoA carboxylase subunit beta TERM 523 381862 - 381888 + G 95 -13 -3.72893 | opp_overlap 381856 381868 TTAAAAGAAGCACGT GATCAAGGCCGT TTA ACGGCCTTGGAC TTTGCTAAAGAAATC TERM 524 381882 - 381868 - g 82 -11.4 -3.17688 | opp_overlap 381862, overlap 381856 GAAGCACGTGATCAA GGCCGT TTA ACGGCC TTGGACTTTGCTAAA accA 381826 - 382596 + | acetyl-CoA carboxylase subunit alpha TERM 525 382622 - 382601 - T 95 -8.8 -5.36314 | opp_overlap 382601 GAAAATATTAAAAAA CATTGGGA ATTATA TCCCAATG TTTTTTAGACGGTAT TERM 526 382601 - 382622 + T 95 -8.8 -5.02476 | opp_overlap 382601 GAAAATATTAAAAAA CATTGGGA ATTATA TCCCAATG TTTTTTAGACGGTAT luxS 383109 - 382627 - | S-ribosylhomocysteinase stu0395 383256 - 383492 + | type I restriction modification system specificity subunit, truncated TERM 527 384274 - 384251 - g 75 -8.2 -4.07466 | opp_overlap 384251 ATTATATAAGAAGAA CCGAAAAGAA GGCA CTCTCTTCGG GTTTTCAGTCTGCAC tnp1216 383643 - 384323 + | IS1216 transposase TERM 528 384477 - 384463 - f 93 -7.1 -5.68023 | opp_overlap 384463 GGACAACTAAAAAAA GCACC TTACT GGTGC TAGTCTCTTGCCTGC TERM 529 384513 - 384526 + F 77 -3.1 -5.41359 | TCGTAAAGTGATTGA TATCC TAAC GGGTA TTTTTTGCTTTCCTT TERM 530 384826 - 384812 - g 73 -8.6 -3.74747 | GCAATTTCTATCAAA CTTAGC AAA GCTAAG GAACAAGCAGAAACT TERM 531 385623 - 385606 - g 73 -9.9 -3.15579 | overlap 385609 CGAAGCCTTGATTAA GGATGGA CGTA TCCATCC AGCTCGTATTGAGGA TERM 532 385859 - 385875 + G 72 -4.3 -4.74215 | GGTGAGAATGTGGCT CTAGCTC GTC GTGCTGG TTTTCTTCATGATAT stu0397 384737 - 386344 + | hypothetical protein TERM 533 386388 - 386410 + T 100 -12.1 -5.27779 | opp_overlap 386382 CAAAGTTAAGCTCTA GCGAGAACA AATGA TGTTCTCGC TTTTTTGCTGTTCAA stu0398 387212 - 386673 - | hypothetical protein TERM 534 387552 - 387505 - H 100 -13.8 -4.2349 | gap 1 TTTGTATACTCAAAA GCTCCATAACTTCT-TAGCAGGT TTT ACCCACTACAGAAATTATAGAGC CAAATAAGCTAAGAA fruR 387770 - 388516 + | transcriptional repressor fruB 388513 - 389424 + | fructose-1-phosphate kinase TERM 535 389479 - 389451 - f 83 -4.8 -5.4833 | gap 2, overlap 389452 389455 TTACTGAACAAAAAA GTCATGTTGCTTGA CCT TCAAGCAAC-T-AC AAAGGAAGCTGCTAT stu0401 389454 - 390167 + | fructose PTS system component IIABC, truncated TERM 536 390230 - 390220 - g 70 -5.4 -4.32804 | overlap 390213 AGAATCAATCCAAAA CATC TTG GATG GTAAAGCTGAAGTTT stu0405 390164 - 390673 + | fructose PTS system component IIABC, truncated stu0406 390728 - 391087 + | fructose PTS system component IIABC, truncated stu0407 391080 - 391397 + | fructose PTS system component IIABC, truncated TERM 537 391431 - 391410 - f 70 -7.3 -3.8448 | opp_overlap 391410, overlap 391413 TAAGATATGACCAAA CAATCTCGT TGTG ACGGGATTG TTTTTTTTGTGTCGT TERM 538 391410 - 391431 + F 100 -9.5 -6.0427 | opp_overlap 391410 391413 TAAGATATGACCAAA CAATCTCGT TGTG ACGGGATTG TTTTTTTTGTGTCGT gor 391547 - 392899 + | glutathione reductase TERM 539 392909 - 392932 + T 76 -3.9 -5.28176 | AGATAAATAGGTGAA GTCTGTCTA CTTAAA TGGATAGAC TTTTTTGTGGCTAAA TERM 540 393007 - 392996 - T 89 -7.2 -5.26875 | opp_overlap 392989 392996 GTCTTAACGAAAAAA GGCC TTTA GGCC TTTTTTTCATTGATT TERM 541 392996 - 393007 + T 93 -7.2 -5.66868 | opp_overlap 392996, overlap 392989 GTCTTAACGAAAAAA GGCC TTTA GGCC TTTTTTTCATTGATT folC1 394257 - 393001 - | folylpolyglutamate synthase / dihydrofolate synthase TERM 542 394290 - 394274 - R 82 -4.4 -5.39721 | opp_overlap 394274 394280 GGATTATAGAAAAAA GTCAGG GGTTT CCTAAC CTTTTCTTTGTTTTA TERM 543 394280 - 394291 + r 79 -4.4 -5.26247 | opp_overlap 394274, overlap 394274 TAGAAAAAAGTCAGG GGTT TCCT AACC TTTTCTTTGTTTTAG TERM 544 394333 - 394317 - R 72 -9.4 -2.61695 | overlap 394316 394314 TTTAGTTGGAAACAG CGCCAC CAGTT GTGGCG TCACCAGTTGTCGTA stu0410 394845 - 394303 - | hypothetical protein TERM 545 394923 - 394913 - H 76 -2.6 -5.51165 | AAAATGCTAAAAAAA TTAT GCT ATAA TAGGGAGTAACTATT nifS2 394954 - 396099 + | aminotransferase (class V), putative TERM 546 396841 - 396825 - g 74 -5.1 -4.66163 | AGGTGCACTTAAAAA GGCTCAA GAT TTGACCC GTAAGTTGACCAAGT thiI 396154 - 397377 + | thiamine biosynthesis protein ThiI stu0413 397483 - 398994 + | glycosyltransferase, putative teichoic acid biosynthesis protein TERM 547 399222 - 399234 + G 77 -7.7 -4.25104 | opp_overlap 399217 399214 GAACAAATAGCAACG CGGAA ATC TTCCG TTTTGATAAGAAACG stu0414 398987 - 400306 + | hypothetical protein TERM 548 400362 - 400384 + F 82 -9.9 -3.70902 | opp_overlap 400361 400362 CCAACATTCAGGAAG GTCGCTTCA CTTTA TGAAGCGGC TTTCCCTGTGGAGGA stu0416 400619 - 400846 + | hypothetical protein TERM 549 401302 - 401287 - g 82 -6.2 -4.94962 | ACAAGGTAAACAAAA GAAAGT TGTC ACTTTC AAATACAAACCTAAA rplU 401075 - 401389 + | 50S ribosomal protein L21 rpmA 401426 - 401716 + | 50S ribosomal protein L27 TERM 550 401727 - 401746 + F 84 -6.4 -5.05116 | AATAATTCAGCTAAA GTCTGCAC TTTT GTGTAGGC TTTTCTTATTTATGA TERM 551 402071 - 402083 + GF 78 -7.7 -4.21462 | opp_overlap 402071 TAAGGCTTCAGGTAA GGTTC TAG GAACC TTTTCACTCATGGCT stu0419 401775 - 402302 + | acetyltransferase stu0420 402202 - 402471 + | acetyltransferase stu0421 402672 - 403046 + | hypothetical protein stu0422 403048 - 403260 + | hypothetical protein stu0423 403253 - 403891 + | hypothetical protein TERM 552 404412 - 404402 - g 79 -5.4 -4.98911 | CACGATAAAAAGAAA GATG CGC CATC AGGTACAGCAGTGAA dapB 403952 - 404719 + | dihydrodipicolinate reductase TERM 553 404733 - 404753 + G 100 -14.1 -3.6106 | opp_overlap 404730 GAAATTAAGTTATTT GCCTTCTGA ATT TCAGAAGGC TTTACCAATATTAGA papL 404716 - 405924 + | tRNA CCA-pyrophosphorylase TERM 554 405982 - 405939 - f 71 -3.3 -5.12971 | gap 2, opp_overlap 405944, overlap 405940 405942 405944 AAGACGTAATAAAAA TGACACACCGCTACAGAACAT GCGT AGGATCCGTAGCGGTGT-T-A TTTGTAAAAAGGAAG TERM 555 405981 - 405942 - f 81 -10 -3.39664 | opp_overlap 405944, overlap 405939 405940 405944 ACGTAATAAAAATGA CACACCGCTACAGAACAT GCGT AGGATCCGTAGCGGTGTT ATTTGTAAAAAGGAA TERM 556 405944 - 405979 + F 93 -10.4 -4.06419 | opp_overlap 405944 405942 405939 405940 GTAATAAAAATGACA CACCGCTACAGAACAT GCGT AGGATCCGTAGCGGTG TTATTTGTAAAAAGG TERM 557 405979 - 405944 - f 91 -12.6 -3.25358 | opp_overlap 405944, overlap 405942 405939 405940 GTAATAAAAATGACA CACCGCTACAGAACAT GCGT AGGATCCGTAGCGGTG TTATTTGTAAAAAGG TERM 558 406170 - 406183 + G 71 -6.7 -4.08216 | CGTATTGGTTTTGAT GGTGA CGTG TCACC TTTTACCAAGGCTAA stu0426 406002 - 407882 + | ABC transporter ATP-binding protein TERM 559 407928 - 407911 - T 89 -9.1 -4.18094 | opp_overlap 407911 CAAAGCATGCTAAAA GCCCTGC ATAT GCAAGGC TTTTTTATATTATTA TERM 560 407911 - 407928 + T 93 -6.9 -5.55695 | opp_overlap 407911 CAAAGCATGCTAAAA GCCCTGC ATAT GCAAGGC TTTTTTATATTATTA stu0427 408467 - 407964 - | hypothetical protein stu0428 409230 - 408544 - | MutT/nudix family protein nadR 410466 - 409360 - | transcriptional regulator TERM 561 409441 - 409427 - G 78 -2.8 -5.52384 | opp_overlap 409427 TTGTCAGCAAAAAAA CTGTCA CTA TCACAG TTTTCTACTAAAATA TERM 562 409973 - 409990 + g 77 -6.3 -4.55118 | TGGCGACGGAAAGGT TTGGTGA TAAA TCGCCAA TTTTCTATAGGATTA TERM 563 410283 - 410316 + g 74 -3.7 -5.10968 | opp_overlap 410279, overlap 410303 410310 CATTACGAAAGCGTC GGTTGAGCGACAGGC CTGT GCGTGTCCCACGATC TTTTTGTGTGTTGCT TERM 564 410879 - 410866 - g 77 -8.1 -4.24404 | opp_overlap 410865 AGTGAAAGCTCAAAA CAGCC ACGA GGCTG AGTTCCTTCAAGCAG TERM 565 411383 - 411365 - g 77 -8.2 -4.19624 | opp_overlap 411377, overlap 411366 TATGGTCAATACAAA CGTATTCG TAA CGAATACA CAGGTGTTCTTACTG TERM 566 411382 - 411366 - g 73 -9.5 -3.11292 | opp_overlap 411377, overlap 411365 ATGGTCAATACAAAC GTATTCG TAA CGAATAC ACAGGTGTTCTTACT gdhA 410792 - 412162 + | glutamate dehydrogenase TERM 567 412225 - 412210 - f 71 -3.2 -5.12916 | opp_overlap 412210, overlap 412205 TATAAAATAAGAAAA GAAGCC TGCG GGTTTC TTTTTTTTAGCTGTT TERM 568 412210 - 412225 + F 91 -5.4 -5.85178 | opp_overlap 412205 412210 TATAAAATAAGAAAA GAAGCC TGCG GGTTTC TTTTTTTTAGCTGTT TERM 569 412233 - 412257 + F 83 -7.9 -4.82667 | CGGGTTTCTTTTTTT TAGCTGTTTTC CTA GAAGTCAGCTA TTTTTGATATAATAA defA 412421 - 412831 + | peptide deformylase TERM 570 412893 - 412928 + F 100 -9.2 -5.68023 | gap 1 TTAGGATAGTTATGG GAGTGAGAGTAGGAACT AAA AATTTCTAC-CTCACTC TTTTTTTAGTTCTCA TERM 571 412937 - 412950 + F 89 -3.1 -5.7946 | overlap 412932 CTCACTCTTTTTTTA GTTCT CATA GGAAC TTTTTTTCTTGACAA TERM 572 413403 - 413415 + G 70 -7.7 -3.695 | opp_overlap 413401 413398 413403 TATTTCGAAAGAAGA TGCTG AAA CAGCA TTTCGAGTCTTTCAC stu0432 413023 - 413466 + | MarR family transcriptional regulator lmrA1 413470 - 415284 + | multidrug ABC exporter ATP binding/membrane-spanning protein lmrA2 415274 - 417052 + | multidrug ABC exporter ATP binding/membrane-spanning protein TERM 573 417089 - 417123 + F 93 -12.4 -3.40403 | opp_overlap 417096, overlap 417096 GATTTAACAAAATTC CATAAAACGTATGATT GTA AGTCATGCGTTTTGTG TTATACTGAGAAGAA TERM 574 417096 - 417116 + F 83 -6.9 -4.75289 | opp_overlap 417096, overlap 417089 CAAAATTCCATAAAA CGTATGATT GTA AGTCATGCG TTTTGTGTTATACTG stu0435 417208 - 417456 + | hypothetical protein stu0437 417952 - 418668 + | sensor histidine kinase, uncoupled, truncated TERM 575 419453 - 419433 - g 76 -8.9 -3.68962 | TTTCAACAGATACAA CGGCAGCAC TTC GTGCCGCTG AAATCGAATCCGATG pyrH 419000 - 419737 + | uridylate kinase TERM 576 419792 - 419776 - g 74 -5.2 -4.71382 | ACAATTATTGAAAAA GCAAAA GAACG TTTTGC CCACACACACGAGTC frr 419752 - 420309 + | ribosome recycling factor stu0440 420358 - 421257 + | hypothetical protein stu0441 421266 - 421481 + | hypothetical protein pcsB 421722 - 423170 + | glucan-binding protein B, putative TERM 577 423180 - 423213 + F 100 -10.5 -4.55689 | gap 1, opp_overlap 423180 423185, overlap 423185 423211 CCATAATGAGTACAA CAAAAGCGATTCG-GA TAT TCTCGAATCGCTTTTA TTTTATATAAATAAT TERM 578 423213 - 423180 - f 93 -12.7 -3.48684 | gap 1, opp_overlap 423180 423185 423211, overlap 423185 CCATAATGAGTACAA CAAAAGCGATTCG-GA TAT TCTCGAATCGCTTTTA TTTTATATAAATAAT TERM 579 423185 - 423208 + F 100 -10.4 -5.23292 | gap 1, opp_overlap 423185 423180, overlap 423180 ATGAGTACAACAAAA GCGATTCG-GA TAT TCTCGAATCGC TTTTATTTTATATAA TERM 580 423208 - 423185 - f 100 -10.4 -4.81814 | gap 1, opp_overlap 423180 423185, overlap 423180 ATGAGTACAACAAAA GCGATTCG-GA TAT TCTCGAATCGC TTTTATTTTATATAA TERM 581 423611 - 423593 - g 71 -9.6 -2.8085 | opp_overlap 423592 423593, overlap 423592 CCAACGGATCCAAAT CTTCAACC ACA GGCTGAAG CTTTCCGTCAAGATG stu0446 423413 - 423928 + | surface immunogenic protein, truncated TERM 582 423961 - 423945 - f 84 -6.5 -5.03945 | opp_overlap 423946, overlap 423946 TAAGAATTACAAAAA GTCACGC CTG GCGTGAT TTTTTTGATATAATG TERM 583 423960 - 423946 - f 82 -10 -3.6074 | opp_overlap 423946, overlap 423945 AAGAATTACAAAAAG TCACGC CTG GCGTGA TTTTTTTGATATAAT TERM 584 423946 - 423960 + F 100 -10 -5.59357 | opp_overlap 423946 423945 AAGAATTACAAAAAG TCACGC CTG GCGTGA TTTTTTTGATATAAT phoH 424008 - 425069 + | phosphate starvation-induced protein TERM 585 425430 - 425449 + F 70 -3.6 -4.96657 | AAGAGTTTATAGTTG TTGAGAAT ATGA AATCTCAA TTTTATTCTCTTTCT TERM 586 425783 - 425773 - f 79 -5.4 -5.14894 | opp_overlap 425773 AAAAAATTATAAAAA GACT TAC AGTC TTTATGATAATTGTC stu0448 426277 - 426690 + | hypothetical protein TERM 587 426781 - 426757 - f 77 -5.1 -5.10077 | opp_overlap 426780, overlap 426759 AAAGATTTGAAAAAA TATAGTGATCA ATA TGATAACTACA AGGATCACTTTGATT stu0449 427161 - 427367 + | hypothetical protein stu0450 427364 - 427771 + | hypothetical protein TERM 588 429583 - 429550 - g 76 -7.5 -4.26202 | ACATGGACGAAGAAA TTGCCTACATCCAAT CTCA AATGAACGCAGGCAA ACCACAAGAAAAAGA metG 427965 - 429968 + | methionyl-tRNA synthetase TERM 589 430138 - 430121 - T 100 -9.9 -4.4261 | opp_overlap 430121 TTTTTAACATTAAAA CGAGTTC AGTC GAACTCG TTTTTTTATACACTA TERM 590 430121 - 430138 + T 100 -9.9 -5.626 | opp_overlap 430121 TTTTTAACATTAAAA CGAGTTC AGTC GAACTCG TTTTTTTATACACTA stu0452 431148 - 430246 - | LysR family transcriptional regulator TERM 591 430563 - 430587 + g 89 -5.8 -5.4505 | overlap 430564 GGACTTGTGGATATC CCTCTAAATC CTTGA GATTTAGAGA TTTTTTCTTGGCCAA TERM 592 430564 - 430586 + g 79 -9.3 -3.86307 | overlap 430563 GACTTGTGGATATCC CTCTAAATC CTTGA GATTTAGAG ATTTTTTCTTGGCCA TERM 593 430617 - 430631 + g 72 -8.6 -3.59262 | AGGGATGTTGACGTC CCAAGA AAA TCTTGG TTTCAAAGTCTCCAA TERM 594 431082 - 431070 - G 79 -3.3 -5.40072 | opp_overlap 431070 GTTGGGTCAAAAAAA GCTTC TTA GCAGC CTTACTAAATGAGCC TERM 595 432358 - 432379 + G 100 -11.7 -5.81622 | ATTTGAATAGGGGAT GCATCTAGA GAAA TCTAGATGC TTTTTTTCATTTTAT TERM 596 433160 - 433150 - g 73 -5.4 -4.62872 | ATTAATGGGGAAAAA TCCA AGA TGGA TGAGAAGACAGGAGG coiA 432356 - 433399 + | competence protein, transcription factor pepB 433410 - 435215 + | oligopeptidase TERM 597 435242 - 435266 + F 84 -5.8 -5.22039 | overlap 435249 435250 TATACTATATTGAGA GAATCATTCT GGAAA AGAGTGGTTC TTTTTTAGGTTTAAG TERM 598 435358 - 435377 + F 95 -8.6 -5.39721 | opp_overlap 435358 TTCTATTAATCTAAA TCTCTAGC ACTC GCTAGGGA TTTTTTATATAATAA stu0455 435398 - 436105 + | methyltransferase, putative prtM 436167 - 437282 + | protease maturation protein precursor TERM 599 437322 - 437290 - f 70 -7.2 -3.72242 | overlap 437284 437296 GCAAATAAATCATAA GATAAAGTTGATAA TGTTG TTATCAACTTGACC TAAGACCTAAAACAC TERM 600 437316 - 437296 - f 78 -7 -4.31815 | overlap 437290 437284 AAATCATAAGATAAA GTTGATAA TGTTG TTATCAAC TTGACCTAAGACCTA TERM 601 439905 - 439892 - g 91 -8.1 -5.27938 | opp_overlap 439900, overlap 439874 439893 ACTCTTAAAGAAAAA GCAGC TGCC GCTGC CGCTGGTGACGTCTT alaS 437624 - 440242 + | alanyl-tRNA synthetase TERM 602 440271 - 440290 + F 93 -7.2 -5.4505 | opp_overlap 440271 440266 440273 440286 AAAAGAAACTTAAAA GGTAGGAT GAAA ATCCTATC TTTTTTCTTAAAAAA stu0458 440404 - 440625 + | cell wall protein precursor, choline binding protein, truncated stu0459 440656 - 441279 + | cell wall protein precursor, choline binding protein, truncated stu0460 441406 - 441669 + | cell wall protein precursor, choline binding protein, truncated TERM 603 441701 - 441735 + F 73 -4.6 -4.86862 | gap 1, overlap 441707 CTCTTTAACTAGTAC G-AAAAAGATTGCTA TTTGTT TAGTAATCTTTTTAC TTTTGATTTTTTGAA TERM 604 441707 - 441728 + F 73 -3.8 -5.13016 | overlap 441701 AACTAGTACGAAAAA GATTGCTA TTTGTT TAGTAATC TTTTTACTTTTGATT cbpD3 441949 - 442938 + | cell wall protein precursor, choline binding protein TERM 605 442954 - 442974 + F 83 -6.1 -5.15634 | TGAGATAAAGAATCT GGTTAGACA ATG TGTCCAGCC TTTTTTGATAGCCTC TERM 606 443004 - 443016 + F 75 -4.9 -4.97666 | opp_overlap 443004 CTCTTTATCAGATGA TTGAA TTT TTCAA TTTTTGTGATGTCTT stu0462 443071 - 443859 + | hypothetical protein TERM 607 444669 - 444649 - g 70 -9.1 -3.1634 | opp_overlap 444642 444648, overlap 444642 GCTGAAATGATTGAA GCCTTGAAT CTG ATTCAAGAC CATCTTTTTGTGGGG aspC3 443869 - 445050 + | transaminase TERM 608 445067 - 445090 + F 82 -3.2 -5.69023 | TAGTAATTATGAAAA CAAGTAGT TAAAAAAT ACTGCTTG TTTTTTTCATATTTT argC 445179 - 446201 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 609 446241 - 446229 - f 80 -4.9 -5.31877 | AGTTAGGAGAAAAAA TATGA AAG TCATA GATGGAACAATTGCT argJ 446230 - 447423 + | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein argB 447450 - 448187 + | acetylglutamate kinase TERM 610 448737 - 448768 + G 75 -10.2 -3.25823 | opp_overlap 448737 448745 448746, overlap 448738 448740 448746 TCAGGTGTTCAACCA GCGGACAAGGCCTT TGTC AAGGCTTTGTCTGA TTACTGTCAGGAAAC TERM 611 448738 - 448767 + G 91 -13.7 -2.55351 | opp_overlap 448737 448745 448746, overlap 448737 448740 448746 CAGGTGTTCAACCAG CGGACAAGGCCTT TGTC AAGGCTTTGTCTG ATTACTGTCAGGAAA TERM 612 448740 - 448765 + G 83 -12.7 -2.81547 | opp_overlap 448737 448745 448746, overlap 448738 448737 448746 GGTGTTCAACCAGCG GACAAGGCCTT TGTC AAGGCTTTGTC TGATTACTGTCAGGA TERM 613 448746 - 448759 + G 73 -6.7 -4.14541 | opp_overlap 448746 448745 448737, overlap 448740 448738 448737 CAACCAGCGGACAAG GCCTT TGTC AAGGC TTTGTCTGATTACTG argD 448191 - 449321 + | acetylornithine aminotransferase TERM 614 449359 - 449329 - T 100 -12.8 -3.9093 | opp_overlap 449329 449333, overlap 449333 TTGACTAGACAAGAA GAAATCACTTGATT TAC AGTCAAGTGATTTC TTTTACTTATTGTCA TERM 615 449329 - 449359 + T 100 -15 -4.59414 | opp_overlap 449329 449333, overlap 449333 TTGACTAGACAAGAA GAAATCACTTGATT TAC AGTCAAGTGATTTC TTTTACTTATTGTCA TERM 616 449355 - 449333 - T 82 -7.8 -4.55093 | opp_overlap 449329 449333, overlap 449329 CTAGACAAGAAGAAA TCACTTGATT TAC AGTCAAGTGA TTTCTTTTACTTATT TERM 617 449333 - 449355 + T 100 -10 -4.81843 | opp_overlap 449333 449329, overlap 449329 CTAGACAAGAAGAAA TCACTTGATT TAC AGTCAAGTGA TTTCTTTTACTTATT stu0468 450138 - 449362 - | hypothetical protein hom 450413 - 451699 + | homoserine dehydrogenase thrB 451783 - 452643 + | homoserine kinase TERM 618 452689 - 452702 + GF 85 -6.7 -5.03747 | CACCTATATTCAATG GGGAT TTCT ATCCC TTTTTTGGAAGCTTT TERM 619 453178 - 453204 + GF 76 -6.6 -4.46155 | overlap 453180 453196 CAGTGACGTAGCCAT GCTAGTAGAAAG TGG CTTGCTACTACC TTTTGTAGCTATCTA stu0471 452591 - 453520 + | chloramphenicol-sensitivity protein (RarD) family protein TERM 620 453513 - 453534 + F 100 -9.5 -4.91109 | opp_overlap 453513 TAACATTTCGTAGAA GTTCCTGAT AGCT ATCGGGAAC TTTTTATAATGCCGA stu0472 453702 - 454250 + | hypothetical protein TERM 621 454271 - 454293 + F 73 -9.3 -2.77994 | opp_overlap 454270 454271, overlap 454263 TAGATAATGGTAAAG TTCTCCTTA TTTAT TAAGGAGAA TCCTTGCAATTTCTC TERM 622 454293 - 454271 - f 73 -9.3 -2.82005 | opp_overlap 454271 454263, overlap 454270 TAGATAATGGTAAAG TTCTCCTTA TTTAT TAAGGAGAA TCCTTGCAATTTCTC stu0473 454385 - 454588 + | hypothetical protein TERM 623 454900 - 454923 + F 100 -11.8 -5.35222 | overlap 454901 GCGGATACATATTCG TCCCTGTCAT GTTT ATGACAGGGG TTTTTTATAGCTTTT TERM 624 454901 - 454922 + F 95 -13.1 -3.78693 | overlap 454900 CGGATACATATTCGT CCCTGTCAT GTTT ATGACAGGG GTTTTTTATAGCTTT TERM 625 454959 - 454949 - f 76 -6.8 -4.56978 | CTTTTAAAGAACAAA GACC GAA GGTC GCAGGTGAATTTAAA stu0474 455058 - 455366 + | hypothetical protein stu0475 455350 - 455661 + | hypothetical protein TERM 626 455668 - 455684 + F 85 -8.7 -4.11216 | opp_overlap 455667 455671, overlap 455669 ACCACCTGATTGAAT TGAGACG GAG CGTCTCG TTTTACGAGTCCGCA TERM 627 455669 - 455683 + F 77 -10 -3.06515 | opp_overlap 455667 455671, overlap 455668 CCACCTGATTGAATT GAGACG GAG CGTCTC GTTTTACGAGTCCGC stu0476 455702 - 456007 + | acetyltransferase valS 456238 - 458889 + | valyl-tRNA synthetase TERM 628 458920 - 458896 - f 71 -5.7 -4.52143 | opp_overlap 458898, overlap 458898 GTGAAATAGAACAAA GAGACACGG TGAAATG CCGTGTCTT TTATTGAAAGTAAAC TERM 629 458898 - 458918 + F 100 -9.7 -4.64676 | opp_overlap 458898 458896 GAAATAGAACAAAGA GACACGGTG AAA TGCCGTGTC TTTTATTGAAAGTAA TERM 630 458918 - 458898 - f 75 -8.3 -3.85554 | opp_overlap 458898, overlap 458896 GAAATAGAACAAAGA GACACGG TGAAATG CCGTGTC TTTTATTGAAAGTAA atpE 459066 - 459263 + | F0F1 ATP synthase subunit C atpB 459298 - 460005 + | F0F1 ATP synthase subunit A atpF 460026 - 460523 + | F0F1 ATP synthase subunit B TERM 631 460869 - 460842 - g 72 -8.6 -3.50437 | gap 1, opp_overlap 460842, overlap 460840 ATCAAGAAGACAACA CTTAC-GATGTCA CTG TGACATCAGCAAG TCCCTTGTCTGAAGA TERM 632 460989 - 460956 - g 76 -3.3 -5.31275 | gap 1, overlap 460960 GTTTAGTAGAAAAAA TTGATGAGGAACTCAT TGG AGGA-TTCGTCATCAA AGCAAAGAATAAGTT atpH 460523 - 461059 + | F0F1 ATP synthase subunit delta atpA 461075 - 462580 + | F0F1 ATP synthase subunit alpha TERM 633 462649 - 462633 - g 79 -5.2 -5.05577 | opp_overlap 462626, overlap 462626 462621 AAATCAAAGCAAAAA TTGCTT CAATT AAGCAA ACGAGTCATATTACA atpG 462599 - 463477 + | F0F1 ATP synthase subunit gamma TERM 634 463529 - 463513 - f 80 -5.1 -5.27206 | overlap 463514 GACATACAATAAAAA GGGATGA TTG TCATCCA GAAAACTATCATAAG TERM 635 463528 - 463514 - f 79 -8.6 -3.74697 | overlap 463513 ACATACAATAAAAAG GGATGA TTG TCATCC AGAAAACTATCATAA atpD 463554 - 464960 + | F0F1 ATP synthase subunit beta atpC 464973 - 465419 + | F0F1 ATP synthase subunit epsilon TERM 636 465426 - 465441 + F 100 -6.8 -6.02919 | opp_overlap 465426 ATAAGATAAAAAAAA CGGGAC CTAA GTCTCG TTTTTTTATTTATCC TERM 637 465441 - 465426 - f 93 -4.6 -6.12328 | opp_overlap 465426 ATAAGATAAAAAAAA CGGGAC CTAA GTCTCG TTTTTTTATTTATCC TERM 638 466230 - 466244 + G 71 -7.2 -3.79633 | CGGCTATCATCGTAT TGACAA CGG TTGTCA TGTTTTCAATTTCTG ftsW 465656 - 466951 + | cell division protein TERM 639 466962 - 466941 - f 73 -8.8 -3.30124 | opp_overlap 466941, overlap 466944 TTGTACCTTTGAGAA GAAGTCGT TAGCAT ACGACTTC TTTTTGTCTTTTGGA TERM 640 466941 - 466962 + F 95 -8.8 -5.28983 | opp_overlap 466941 466944 TTGTACCTTTGAGAA GAAGTCGT TAGCAT ACGACTTC TTTTTGTCTTTTGGA tuf 467189 - 468385 + | elongation factor Tu TERM 641 468433 - 468452 + F 100 -10 -4.93696 | opp_overlap 468431 468435 AGACAATAATTGAGA GAGTCGAG TTTA CTCGGCTC TTTTTGGTCTTTAAA tpiA 468634 - 469392 + | triosephosphate isomerase TERM 642 469403 - 469423 + F 100 -12.7 -5.72622 | opp_overlap 469403 AATAATGAATAAAAA GTTCGAGAA CTG TTCTCGAAC TTTTTTGTTTGTAAA TERM 643 469423 - 469403 - f 100 -12.7 -5.23396 | opp_overlap 469403 AATAATGAATAAAAA GTTCGAGAA CTG TTCTCGAAC TTTTTTGTTTGTAAA TERM 644 469695 - 469682 - g 71 -5.3 -4.56775 | opp_overlap 469673 ATGGGGCTGGAAAAA CTTCA GTTT TGAAG GTGCTTTTGCCACGT TERM 645 470146 - 470119 - g 70 -3.4 -4.87665 | TTGGATTTAGAAAAA CTTGATATGCAC CAAC GTGTACGTCAAG GGTACTTAGATTTAG tdk 469630 - 470259 + | thymidylate kinase dnaH 470268 - 471143 + | DNA polymerase III subunit delta' TERM 646 471902 - 471890 - g 77 -6.2 -4.58395 | opp_overlap 471891, overlap 471891 GTTATGTTTGAAAAA GGGG GAGCT CCCC TAACTTATGGAGTGG sip 471140 - 471946 + | signal-petidase-like protein stu0492 471933 - 472253 + | DNA replication intiation control protein YabA TERM 647 472498 - 472482 - g 76 -6.6 -4.4648 | opp_overlap 472481 ATGCTTACGAGAAAA TTCCAG ATTTA CTGGAA CGTTTGAAGTCAGGC stu0493 472256 - 473122 + | tetrapyrrole methylase family protein TERM 648 473522 - 473510 - gf 71 -7.7 -3.54543 | opp_overlap 473510 ATGGAGTCTCTGAAA CGACT TCA AGTCG TGGTCTAGCTATTAC TERM 649 474284 - 474253 - gf 73 -8.8 -3.21276 | opp_overlap 474260 474262, overlap 474251 474258 GCTGTTTTTACAACA CCAAATCTAGCCCT AGAT AAGGCTAATTTTGG GCTTATCTATGGAAA amtB 473212 - 474495 + | ammonium uptake transporter gnlB 474440 - 474847 + | nitrogen regulatory protein P-II TERM 650 474864 - 474887 + F 73 -3.8 -5.19261 | overlap 474868 GTCATATTGAATTAG GGCTTAAACC AGTT GGTTTGTGTC TTTTTTAGTGAATTT TERM 651 475026 - 475001 - g 71 -4.2 -4.86939 | gap 1 TAAGAAATCTAAAAA GAAAAAG-AAG TCTGT CTTGCTTTTTC CTAAATTTTTCCAAA mur1 474945 - 475601 + | peptidoglycan hydrolase stu0497 475588 - 476445 + | hypothetical protein TERM 652 476479 - 476452 - f 100 -10 -5.18726 | opp_overlap 476435 476452 GCTTTATAAGAAAAA GACCTTTAGC TTTTAATT GCTAAAGGTC TTTCGATTTCGGATA TERM 653 476452 - 476479 + F 83 -10 -3.85165 | opp_overlap 476452, overlap 476435 GCTTTATAAGAAAAA GACCTTTAGC TTTTAATT GCTAAAGGTC TTTCGATTTCGGATA stu0499 476949 - 477593 + | Na/Pi cotransporter II-related protein, truncated stu0500 477601 - 477747 + | Na/Pi cotransporter II-related protein, truncated TERM 654 477774 - 477756 - f 73 -7.4 -3.77087 | opp_overlap 477748 477756, overlap 477750 GATTTAATATCGAAA GTCGAGAA CTT TTCTCGGC TTTTCTGATATAATG TERM 655 477756 - 477774 + F 100 -9.6 -4.52047 | opp_overlap 477750 477756, overlap 477748 GATTTAATATCGAAA GTCGAGAA CTT TTCTCGGC TTTTCTGATATAATG nagA 477814 - 478980 + | N-acetylglucosamine-6-phosphate deacetylase stu0502 479085 - 479408 + | hypothetical protein stu0503 479281 - 479583 + | hypothetical protein TERM 656 479686 - 479701 + G 70 -5.4 -4.35483 | TGTTTGTGTCATATC GGCTAT AGCG ATGGCC TTTGTTATGGTAGGC stu0504 479567 - 479935 + | hypothetical protein glyQ 480610 - 481527 + | glycyl-tRNA synthetase subunit alpha TERM 657 481518 - 481504 - f 84 -6.4 -5.1287 | overlap 481505 GCCACACGCAAAAAA CTCCTC GCA GAAGAG GAAGAATAAAGAGAG TERM 658 482577 - 482589 + G 70 -5.5 -4.3129 | opp_overlap 482577 TCGAATACCCAACTA CCTTC ATG GGAGG TTTTGATACTAAATA glyS 481811 - 483847 + | glycyl-tRNA synthetase subunit beta stu0508 483860 - 484117 + | hypothetical protein TERM 659 484129 - 484157 + F 84 -6.7 -5.15969 | opp_overlap 484129 ATAATAATTTAAAAA TAGGGGCTTGAAT TTA GTCCGAGCTCCTA TTTTTTAAATTAAAA cycA 484279 - 485679 + | D-Serine/D-alanine/glycine:H+ symporter TERM 660 485690 - 485706 + T 93 -8 -5.4505 | opp_overlap 485690 AATAAACCAACCTAA CTCACC TTTCT GGTGAG TTTTTTATTGCAAAA TERM 661 485706 - 485690 - T 70 -8 -3.2827 | opp_overlap 485690 AATAAACCAACCTAA CTCACC TTTCT GGTGAG TTTTTTATTGCAAAA TERM 662 485739 - 485725 - T 100 -10 -5.44119 | opp_overlap 485722 485725, overlap 485730 TTTATTGCAAAAAAA GGACAC AAG GTGTCC TGGTTATAATTATGA TERM 663 485725 - 485739 + T 76 -10 -2.90904 | opp_overlap 485725 485730, overlap 485722 TTTATTGCAAAAAAA GGACAC AAG GTGTCC TGGTTATAATTATGA stu0510 486384 - 485749 - | hypothetical protein TERM 664 486502 - 486477 - H 95 -4.9 -6.20267 | opp_overlap 486477 CCAAAAACAAAAAAA TAATTTTGTAA GTGT TTGCAAAATTA TTTTAACTCTGATAT TERM 665 486477 - 486502 + H 75 -7.1 -4.2535 | opp_overlap 486477 CCAAAAACAAAAAAA TAATTTTGTAA GTGT TTGCAAAATTA TTTTAACTCTGATAT TERM 666 486568 - 486626 + H 82 -7.7 -4.57518 | gap 1, opp_overlap 486572, overlap 486572 CAGGCAAAACCTAGA TAAATACGAAAAACTAATGGGAGTAGTG CATA CTCAAC-CCAATTGGTTCTTCGTATTTA TTTAGTTTTTTTGTT TERM 667 486572 - 486622 + H 70 -4.1 -4.73341 | gap 1, opp_overlap 486572, overlap 486568 CAAAACCTAGATAAA TACGAAAAACTAATGGGAGTAGTG CATA CTCAAC-CCAATTGGTTCTTCGTA TTTATTTAGTTTTTT stu0511 486688 - 486864 + | beta-glucoside PTS system component IIABC, truncated stu0512 486877 - 487311 + | beta-glucoside PTS system component IIABC, truncated stu0513 487356 - 488072 + | beta-glucoside PTS system component IIABC, truncated stu0514 488050 - 488508 + | beta-glucoside PTS system component IIABC, truncated TERM 668 488586 - 488638 + T 100 -17.6 -4.11033 | opp_overlap 488598, overlap 488598 TATCTCCTCGCTGCT GTTAAATAAAAATAAATCCGAGAA GCTGA TTCTCGGATTTATTTTTATTTGAA TTTGTAGTCTTTAAT TERM 669 488626 - 488598 - T 100 -13.4 -5.27335 | opp_overlap 488598 488586 GCTGTTAAATAAAAA TAAATCCGAGAA GCTGA TTCTCGGATTTA TTTTTATTTGAATTT TERM 670 488598 - 488626 + T 100 -13.4 -5.34381 | opp_overlap 488598, overlap 488586 GCTGTTAAATAAAAA TAAATCCGAGAA GCTGA TTCTCGGATTTA TTTTTATTTGAATTT ppiA 489388 - 488630 - | peptidyl-prolyl cis-trans isomerase TERM 671 489213 - 489235 + g 75 -5.6 -4.7657 | overlap 489215 ACTTTGTCTGTCAAC TGTGGAAAAG CCT CTTTTCCGGA TTTTTGAGCTTTTTC stu0516 489750 - 490040 + | hypothetical protein stu0517 490076 - 490483 + | hypothetical protein stu0518 490480 - 490956 + | hypothetical protein stu0519 491102 - 491326 + | hypothetical protein TERM 672 491349 - 491366 + F 100 -9.1 -4.8048 | opp_overlap 491349 TTTTAATTAATTCAA GCTCAGG GTTG CCTGGGC TTTTTACTATCAACA stu0520 491433 - 492347 + | LysR family transcriptional regulator lspA 492356 - 492817 + | prolipoprotein signal peptidase (spase II) rluD 492801 - 493691 + | ribosomal large subunit pseudouridine synthase D TERM 673 493696 - 493708 + F 81 -7.7 -4.27512 | overlap 493703 GGAAAGCTTAATAGT CATCC AAC GGATG TTCTTTCTTGTGAGA TERM 674 493703 - 493732 + F 100 -7.9 -7.14698 | overlap 493696 TTAATAGTCATCCAA CGGATGTTCTTTC TTGT GAGAGAGTGTCCG TTTTTTTTTTTTTTT TERM 675 493876 - 493894 + G 100 -9.6 -5.56264 | CCATGTTTTTGTGTA TCTCCTTG TTT CAAGGGGA TTTTTTGTATTTAGA TERM 676 493948 - 493936 - g 76 -3.3 -5.20735 | overlap 493937 TGAAGAAAAAAGAAA TCGTC GAT GACGT AACCATGAAACGTGC pyrR 493836 - 494441 + | pyrimidine regulatory protein PyrR pyrP 494755 - 496065 + | uracil permease TERM 677 496360 - 496350 - g 71 -6.8 -4.00756 | opp_overlap 496350 TAGCTCAGTAAATAA GGGT GAA ACCC TCTATGATACGATTT TERM 678 496819 - 496807 - g 71 -6.3 -4.18506 | opp_overlap 496807 496812, overlap 496812 GGATTTTCAAAAGAA GAGTA CCA TACTC TCTATGGTTTGACTG pyrB 496090 - 497016 + | aspartate carbamoyltransferase catalytic subunit TERM 679 497314 - 497326 + G 77 -6.3 -4.49389 | opp_overlap 497312 497314 ACCAGTCTTACAACA GTCAA ATT TTGAC TTTTACTTATCCACT carA 497169 - 498257 + | carbamoyl phosphate synthase small subunit TERM 680 498283 - 498293 + F 71 -6.8 -4.17762 | opp_overlap 498282 CTAGTGACTATAATG GGGT GTG ACCC TTGTTTTCCCCAGTC carB 498602 - 501781 + | carbamoyl phosphate synthase large subunit TERM 681 501794 - 501812 + F 89 -8.8 -4.63218 | TAAACACAATATTGA GTCTCAGC TTT GCTGGGGC TTTTATTGAAGACAA TERM 682 501908 - 501932 + F 83 -6.4 -4.91712 | opp_overlap 501901 CTCAAAACTTCCGAA CGTCTGAAAC TAATC GATTCAGGCG TTTTTATCACTTAGG TERM 683 502051 - 502069 + F 82 -4.5 -5.4505 | ATAATAATGTTTTGA GTCTCAG CTTTT CTGGGGC TTTTTTCTTACACGA TERM 684 502311 - 502321 + G 70 -5.4 -4.42386 | opp_overlap 502311 TATCTTCTATATAAG GACA GAT TGTC TTTTGTCAATGCAGA stu0528 502158 - 502916 + | hypothetical protein stu0529 503387 - 503497 + | hypothetical protein stu0530 503635 - 504027 + | hypothetical protein TERM 685 504042 - 504032 - g 73 -5.4 -4.58663 | ACCATGGCTGAAAAA TCCT TTA AGGA TGGCGAGACACTAAA stu0531 504020 - 504124 + | ABC transporter membrane-spanning protein, truncated stu0532 504134 - 504445 + | ABC transporter membrane-spanning protein, truncated stu0533 504454 - 504849 + | ABC transporter membrane-spanning protein, truncated stu0535 504846 - 505061 + | ABC transporter membrane-spanning protein, truncated TERM 686 505211 - 505198 - f 74 -2.3 -5.41746 | AAGGTTTGAAAAAAA CTGAC CTAA GACAG TTGGGGAGCTAGACT TERM 687 505284 - 505305 + F 84 -3.7 -5.64274 | overlap 505285 TGACGTATTGTACTT TCGTGTCTA GGTT TAGGTACGG TTTTTTTGTGCCTAG rplJ 505352 - 505855 + | 50S ribosomal protein L10 TERM 688 505865 - 505838 - f 75 -7.1 -4.13995 | gap 1, overlap 505841 GTTGCAGAAAGCAAA GAAGACGGCGCT GCGTA AGC-CCATCTTC ACAACTCGTAGCCTA TERM 689 505872 - 505887 + F 77 -9 -3.63336 | opp_overlap 505871 CCCATCTTCACAACT CGTAGC CTAA GCTACG TTTAAAATACTATAT rplL 505930 - 506298 + | 50S ribosomal protein L7/L12 TERM 690 506401 - 506422 + F 95 -5.2 -6.23317 | opp_overlap 506401 TTCCCTACTCAAAAA CTGCCAAA TTTATT TTTGGTAG TTTTTTTGTTTTTCT stu0538 507552 - 509288 + | lipid/multidrug/protein-type ABC exporter, ATP binding/membrane-spanning protein TERM 691 509515 - 509533 + G 71 -6 -4.26292 | overlap 509516 TAGCAGGTGCTCATA TCAACGTG TCC TACGTTGG TTTAGTTTTGGTCTT stu0539 509301 - 511088 + | lipid/multidrug/protein-type ABC exporter, ATP binding/membrane-spanning protein TERM 692 511123 - 511095 - T 89 -7.5 -5.22481 | opp_overlap 511098, overlap 511098 GAGAAATAAACAAAA TAATCCATCAGTT CAT AACTGGTGGATTT TTTCTGAATGTGATG TERM 693 511120 - 511098 - T 93 -9.2 -4.64595 | opp_overlap 511098, overlap 511095 AAATAAACAAAATAA TCCATCAGTT CAT AACTGGTGGA TTTTTTCTGAATGTG TERM 694 511098 - 511120 + T 100 -11.4 -5.29782 | opp_overlap 511098 511095 AAATAAACAAAATAA TCCATCAGTT CAT AACTGGTGGA TTTTTTCTGAATGTG TERM 695 511174 - 511149 - T 80 -10.5 -3.14051 | overlap 511147 TGATGTGCAGTAAGA GAGACTTCCCC TGTA AGAGAAGTCTC AACATCACTATTTAT queA 512229 - 511186 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 696 512361 - 512350 - g 76 -4.4 -5.16038 | AGATAATAAAGAAAA TGGT ATAT ACCA ATATTGAGGTGAATA nagB 512304 - 513080 + | glucosamine-6-phosphate isomerase TERM 697 513164 - 513138 - T 85 -4.5 -5.72616 | gap 1, opp_overlap 513138 513163 AGTTATAGAAAAAAA CAGGTTGAGCTA GTGC TA-CTCCACCTG TTTATTAATGAATAA hk02 514541 - 513246 - | sensor histidine kinase TERM 698 514415 - 514459 + g 86 -9.6 -4.10161 | opp_overlap 514415 GTTCCCCATGAAAAA TCAATATGAAAAAAAGGGCT ACTAA AGGCTTCTTTTTCATATTGA TTTTAGACAATGGTC TERM 699 514459 - 514415 - G 93 -9.6 -4.72272 | opp_overlap 514415 GTTCCCCATGAAAAA TCAATATGAAAAAAAGGGCT ACTAA AGGCTTCTTTTTCATATTGA TTTTAGACAATGGTC rr02 515266 - 514541 - | response regulator TERM 700 514727 - 514744 + g 75 -2.7 -5.3104 | overlap 514736 AATAAAATAATTAGG GAGTTTT TCCA AAATCTC TTTTGTTTTTAGTAG TERM 701 514909 - 514899 - G 72 -3.2 -5.1287 | CCCATATCCAAAAAA CGCA AAA TACG ATCCAATACTTTCAT stu0545 515474 - 516721 + | molybdopterin biosynthesis protein (HesA/MoeB/ThiF family protein), putative stu0546 516682 - 517629 + | ABC transporter ATP binding protein stu0547 517631 - 518353 + | ABC transporter membrane-spanning protein stu0548 518542 - 519525 + | hypothetical protein TERM 702 519543 - 519560 + F 84 -5.5 -5.45802 | TTAAATATTGAAGAA GCTGGGA GAAA TCTCGGC TTTTTATTTTGCAAA stu0549 519683 - 519901 + | transcriptional repressor, putative stu0550 519915 - 520412 + | hypothetical protein TERM 703 520447 - 520425 - f 71 -7.8 -3.56251 | opp_overlap 520425 TAAATAGTGAGAGAA TCAGACCA TTCTTTT TGGTCTGA TTTTTTTGTGTTATA TERM 704 520425 - 520447 + F 100 -7.8 -5.84432 | opp_overlap 520425 TAAATAGTGAGAGAA TCAGACCA TTCTTTT TGGTCTGA TTTTTTTGTGTTATA stu0551 520491 - 521261 + | phosphorylase Pnp/Udp family protein, putative stu0552 521353 - 522036 + | hypothetical protein TERM 705 522052 - 522070 + F 100 -9.6 -5.74122 | TTGTTAGTAGTATGA GTCTACCT TTT AGGTAGGC TTTTTTTGTCTACTA rsuA1 522116 - 522835 + | ribosomal small subunit pseudouridine synthase A TERM 706 523044 - 523030 - f 70 -7.2 -3.88787 | TGAGAGTTTCACAAA TGGATT GAC AATCCA AAACTGATCAGAGAG hipO1 523071 - 524216 + | aminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase TERM 707 524448 - 524471 + F 100 -11 -4.51847 | opp_overlap 524448 524443 524451 TAGTTTACAACTTAA GAGCCCAGCC GATT GGTTGGGTTC TTTTGTGAATTGTTT stu0555 524649 - 524786 + | alanine dehydrogenase, truncated stu0556 524761 - 525048 + | alanine dehydrogenase, truncated TERM 708 525136 - 525158 + F 93 -7.7 -5.63103 | opp_overlap 525136 CAGAATGAAAGAGAA GTCGCGCCA TGAAT TGGTGTGAC TTTTTTTAGTTAGGA stu0557 525757 - 527073 + | pyridine nucleotide-disulfide oxidoreductase TERM 709 527082 - 527095 + T 90 -8.1 -5.21709 | opp_overlap 527082 GATTTAACATGAAAA GAGCC GTGA GGCTC TTTTTTAATATAGAA TERM 710 527095 - 527082 - T 83 -8.1 -4.43681 | opp_overlap 527082 GATTTAACATGAAAA GAGCC GTGA GGCTC TTTTTTAATATAGAA TERM 711 527145 - 527158 + T 73 -8.1 -3.65314 | overlap 527149 TCCTTAGGTGATTTC GGTCG TCAG CGACC TTCTTCGAAGTTCCA stu0558 527855 - 527292 - | hypothetical protein TERM 712 527950 - 527927 - H 79 -9 -3.75153 | gap 1, opp_overlap 527927 TGTCTCTAATGCAAA GCGACACTCTA GAT TAGA-TGTCGC TTTTTTTGCGCTTTG TERM 713 527927 - 527950 + H 95 -9 -5.49809 | gap 1, opp_overlap 527927 TGTCTCTAATGCAAA GCGACACTCTA GAT TAGA-TGTCGC TTTTTTTGCGCTTTG mvaK1 528118 - 528996 + | mevalonate kinase mvaD 528978 - 529922 + | mevalonate pyrophosphate decarboxylase mvaK2 529915 - 530910 + | phosphomevalonate kinase idi 530960 - 531967 + | isopentenyl pyrophosphate isomerase TERM 714 532094 - 532067 - f 100 -14.4 -4.36914 | opp_overlap 532063 TCCGCTGTGAGAAAA GTTCTTGAAACA CTAG TGTTTCAAGAAC TCGGAATTTTTGAGA TERM 715 532135 - 532111 - f 73 -8.8 -3.31322 | opp_overlap 532116, overlap 532116 CGGAATTTTTGAGAA TAAAACAGTT TGGGG AACTGTTTTA GCCTGAGCCTAGAAA TERM 716 532130 - 532116 - f 70 -4.3 -4.77165 | opp_overlap 532116, overlap 532111 TTTTTGAGAATAAAA CAGTT TGGGG AACTG TTTTAGCCTGAGCCT TERM 717 532264 - 532253 - f 74 -5.8 -4.63928 | opp_overlap 532253, overlap 532242 AGATTATTCTAAAAA GAGC GTCA GCTC TTTTTTCAATACCGT TERM 718 532253 - 532264 + F 83 -5.8 -5.09225 | opp_overlap 532253 532242 AGATTATTCTAAAAA GAGC GTCA GCTC TTTTTTCAATACCGT gcaD 532516 - 533898 + | UDP-N-acetylglucosamine pyrophosphorylase stu0564 533974 - 534522 + | hypothetical protein stu0565 534526 - 534786 + | hypothetical protein pfs 534854 - 535546 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase TERM 719 535597 - 535620 + F 93 -8.2 -5.69473 | opp_overlap 535597 TAAGGTTAAAAGCTA CTGTCATTCT TAAG AGGATGGCAG TTTTTTTCTACTATA stu0567 536465 - 536935 + | hypothetical protein stu0568 537066 - 537356 + | hypothetical protein TERM 720 537372 - 537389 + F 82 -4.1 -5.4588 | opp_overlap 537372 537374, overlap 537374 GACGATGACCTAAAA TATCGAG AGTA CTCGATC TTTTTTGTGCTTTTC TERM 721 537374 - 537387 + F 74 -6.7 -4.32919 | opp_overlap 537374 537372, overlap 537372 CGATGACCTAAAATA TCGAG AGTA CTCGA TCTTTTTTGTGCTTT stu0569 537481 - 538485 + | glycosyl transferase family protein TERM 722 538580 - 538590 + G 70 -3.2 -4.91852 | AGTTGGAAAAAATGG GGCA TAA TGTC TTTATTTTTACTACG stu0570 538486 - 539808 + | glycosyl transferase family protein TERM 723 540091 - 540117 + G 100 -9.5 -5.60993 | TAAGGTGGAACCACG TTGCGACGTCC TTTTT GGATGTTGCAA TTTTTTTGTGAGGAG stu0571 540080 - 540367 + | hypothetical protein TERM 724 540891 - 540871 - g 75 -10.5 -3.24597 | overlap 540869 AATCTCTAACGAAGA TCTTCCTCG TAT CGAAGAAGA AATGAAGAAAATCGT thrS 540521 - 542467 + | threonyl-tRNA synthetase TERM 725 542476 - 542498 + F 100 -10.6 -4.7373 | opp_overlap 542476 CGAATAAATCAGAAA GTCGGTTAGC TAA GCTAGCTGAC TTTTTAGTAGGATAA TERM 726 543189 - 543160 - g 89 -9.5 -4.24342 | gap 1, opp_overlap 543160 543162 GTCTTTATCAAGAAA TAGCTTACAGACAA CTC TTGTC-GCAAGCTA TGTTAAATGAGAGCC stu0573 542517 - 543458 + | putative hydrolase stu0574 543478 - 544344 + | hypothetical protein TERM 727 544543 - 544577 + T 91 -5.7 -5.80817 | opp_overlap 544544 544546, overlap 544546 TGAAAAAATAAAGAA AGAGCCAGATCTGTA AGAAA TTCAGGTCTGGCTTA TTTTTTTATATTCAA TERM 728 544576 - 544544 - T 75 -4.8 -5.00234 | opp_overlap 544543 544546, overlap 544546 GAAAAAATAAAGAAA GAGCCAGATCTGTA AGAAA TTCAGGTCTGGCTT ATTTTTTTATATTCA TERM 729 544574 - 544546 - T 76 -7.4 -4.05342 | opp_overlap 544546 544543, overlap 544544 AAAAATAAAGAAAGA GCCAGATCTGTA AGAAA TTCAGGTCTGGC TTATTTTTTTATATT TERM 730 544546 - 544574 + T 100 -9.6 -4.94703 | opp_overlap 544544 544546, overlap 544543 AAAAATAAAGAAAGA GCCAGATCTGTA AGAAA TTCAGGTCTGGC TTATTTTTTTATATT hlyIII 545528 - 544851 - | hypothetical protein TERM 731 546087 - 546061 - R 82 -3 -5.66338 | opp_overlap 546054 AAAGACAAGAAAAAA GATGACGGAA TAAGAGG TTCCAACATC TTTTTTTCTTTTAGT mvaA 547417 - 546146 - | 3-hydroxy-3-methylglutaryl-coenzyme A reductase mvaS 548609 - 547410 - | hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase) TERM 732 547556 - 547538 - G 77 -6 -4.52589 | CCTCTTCATAGAAAA GTTGCTCA TAG TCAGCAAC GCTCAAGTTATGGCG TERM 733 548630 - 548616 - H 77 -8.6 -3.60098 | opp_overlap 548613 548616 ATTCTTCATTGTAAA GTATCC AGA GGATAC TAATCTATAGTGATT thyA 548907 - 549767 + | thymidylate synthase folA 549875 - 550378 + | dihydrofolate reductase stu0580 550383 - 550553 + | hypothetical protein clpX 550571 - 551797 + | ATP-dependent protease ATP-binding subunit stu0582 551807 - 552406 + | GTPase EngB TERM 734 552413 - 552428 + F 93 -6.1 -5.89921 | opp_overlap 552412 552413 GAATTGTAAGAAAAG CTCGG TGAAAT CCGAG TTTTTTTCTTGTGAT TERM 735 552806 - 552816 + G 76 -6.8 -4.35116 | ACTAAGTTTATCAGT CCTG GAA CAGG TTTTACTGTAGCCTG rocE 552461 - 553912 + | L-arginine permease mmuM 553906 - 554874 + | homocysteine methyltransferase TERM 736 554950 - 554964 + F 80 -7.1 -4.62069 | opp_overlap 554950 554949 TAGTAGAAAATGAAG CCAGC ATTAA GCTGG TTTTTAAAATGAAGA stu0585 554987 - 555241 + | hypothetical protein stu0586 555313 - 555672 + | hypothetical protein TERM 737 555682 - 555705 + T 86 -8.2 -4.73617 | opp_overlap 555682 GCTTAAGCCTAAAAA GATCCGAGGT AGAG ACTTTGGATC TTTATTATTTGTTTT TERM 738 555771 - 555753 - T 100 -13.2 -4.9645 | AGCAGAACAAGAAAA CCACTAGC TTG GCTAGTGG TCAATAGTAATTAAT stu0587 556427 - 555786 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 739 557973 - 557963 - g 73 -6.8 -4.24623 | CTAAATACAGAGAAA GCCA AAA TGGC AGATATTCTCAAAAA parE 556565 - 558514 + | DNA topoisomerase IV subunit B parC 559088 - 561607 + | DNA topoisomerase IV subunit A TERM 740 561619 - 561644 + F 93 -6.9 -5.65927 | ATAGAGTTAAGAAAG CTTTGTTCTCT TACT AGAGGGCAGAG TTTTTTCTTTGGCTG TERM 741 561721 - 561705 - f 73 -8.1 -3.66556 | overlap 561713 AATTTTGCAACATAA CATTGAA ATT TTCAATG AAAAGGACTATACTA bcaT 561771 - 562793 + | branched-chain amino acid aminotransferase TERM 742 562837 - 562822 - f 77 -9 -3.6284 | opp_overlap 562822 AATGATTATTTTAAA GCTTGC CCTT GCAAGC TTTTCTCTTTTTCGG TERM 743 562822 - 562837 + F 95 -9 -4.98672 | opp_overlap 562822 AATGATTATTTTAAA GCTTGC CCTT GCAAGC TTTTCTCTTTTTCGG stu0591 562912 - 563142 + | hypothetical protein TERM 744 563169 - 563195 + F 77 -8.8 -3.61517 | opp_overlap 563172, overlap 563172 AAGGCTTGCTTTGAT CAAGAAACTGTG TTA TACTGTTTCTTG TTCTTAAGGAGAGAT rpsA 563544 - 564746 + | 30S ribosomal protein S1 TERM 745 564758 - 564773 + F 100 -7.6 -5.84432 | opp_overlap 564756 564758 GTAAGATAATAAAGA GACATG GAAA CATGTC TTTTTTTATATTATA TERM 746 564773 - 564758 - f 73 -7.6 -3.83144 | opp_overlap 564758, overlap 564756 GTAAGATAATAAAGA GACATG GAAA CATGTC TTTTTTTATATTATA TERM 747 564896 - 564920 + F 100 -9.3 -5.37865 | opp_overlap 564896 GGTGCAAAGTGGAAA CGTTGAGAGCG TAG TGCTTTCAGCG TTTTTTAGTTGTTAA stu0593 565574 - 565810 + | hypothetical protein stu0594 565968 - 566195 + | hypothetical protein stu0595 566407 - 566832 + | hypothetical protein murN 566928 - 568163 + | peptidoglycan branched peptide synthesis protein, alanine adding enzyme, TERM 748 568170 - 568191 + F 82 -8.7 -4.04897 | CGTAACTAAGTCTCG GAGGGCTTC TATG GGAGTCCTC TTTCATTATAGTTGT stu0597 568438 - 568596 + | oxidoreductase, truncated stu0598 568612 - 568797 + | oxidoreductase, truncated stu0599 568909 - 569223 + | oxidoreductase, truncated TERM 749 569254 - 569228 - T 85 -6.5 -5.25803 | opp_overlap 569228 AAGTCTTATAAAAAA GAAGCTGTGGC GGTTG GCGACGGCTTC TTTTTGAATTTATAC TERM 750 569228 - 569254 + T 95 -8.7 -4.84529 | opp_overlap 569228 AAGTCTTATAAAAAA GAAGCTGTGGC GGTTG GCGACGGCTTC TTTTTGAATTTATAC stu0600 569566 - 569264 - | hypothetical protein stu0601 570034 - 569576 - | MutT/nudix family protein TERM 751 570150 - 570167 + r 85 -4.1 -5.66868 | opp_overlap 570151, overlap 570151 TAAAAGTATAAAAAA ACAAGTC ATTC GACTTGG TTTTTTTCCTTAGTT TERM 752 570166 - 570151 - R 100 -7.6 -5.77632 | opp_overlap 570150 570151 AAAAGTATAAAAAAA CAAGTC ATTC GACTTG GTTTTTTTCCTTAGT TERM 753 570151 - 570166 + r 76 -7.6 -3.97681 | opp_overlap 570151, overlap 570150 AAAAGTATAAAAAAA CAAGTC ATTC GACTTG GTTTTTTTCCTTAGT clpE 572435 - 570177 - | ATP-dependent Clp protease TERM 754 570207 - 570223 + g 89 -5.9 -5.41746 | TAATGCTTCAGTTTT CTGAGAA GTT TTTTCAG TTTTTTTAGCAGATT TERM 755 571159 - 571174 + g 74 -4 -5.14563 | TTTTCTTTTAAATCA CCGATA GGAA TATTGG TTTTTTGCTCGACAA TERM 756 572314 - 572324 + g 75 -5.4 -4.70046 | TGGTTAAGGGGGTTC TCTG GAT CAGA TTTTATGATTTTATA TERM 757 572950 - 572992 + G 79 -8.5 -4.07568 | overlap 572948 CGGTTGTTGATACGG CCAAGGTCCTTGGTTCTAT GTTTG ATGGAATCGAGTACCGTGG TTTTAAACAAGAGGA TERM 758 573239 - 573253 + G 75 -10 -3.22475 | opp_overlap 573238 573237 573235, overlap 573238 TTCGCCAGAAATACT TCAGCC AGA GGCTGA TATTGTAGAGCTAGC argF 572613 - 573656 + | ornithine carbamoyltransferase stu0604 573725 - 573955 + | hypothetical protein TERM 759 573998 - 574023 + F 83 -4.7 -5.40072 | opp_overlap 574000, overlap 574000 TCCAAAAATTCAAAA TGCCTGGGACT CAAT AGTTTCAGGTG TTTTTTTAGGGCGAG TERM 760 574000 - 574021 + F 78 -7.3 -4.34482 | opp_overlap 574000, overlap 573998 CAAAAATTCAAAATG CCTGGGACT CAAT AGTTTCAGG TGTTTTTTTAGGGCG TERM 761 574107 - 574124 + F 70 -4.2 -4.72201 | overlap 574085 TTTTCGTAGAGTTTT TGATTG CTATGT CAATCA TTATTTTTTATACCG stu0605 574221 - 574904 + | polar amino acid ABC uptake transporter membrane-spanning protein stu0606 574904 - 575638 + | polar amino acid ABC uptake transporter ATP-binding protein TERM 762 575673 - 575691 + F 100 -11.8 -5.26155 | opp_overlap 575673 AACATTGTCTATGAA GACTGGAA GCT TTCCAGTC TTTTTCTGTTTGTGT TERM 763 575691 - 575673 - f 89 -11.8 -3.15427 | opp_overlap 575673 AACATTGTCTATGAA GACTGGAA GCT TTCCAGTC TTTTTCTGTTTGTGT feoA 575812 - 576288 + | ferrous iron uptake transporter protein A, putative TERM 764 577128 - 577140 + G 88 -7.7 -5.1101 | GTTACCAATCGTATT TTGGC TTT GCCAA TTTTTTCAGTAGTCA TERM 765 577398 - 577418 + G 76 -6.9 -4.33819 | GTGCTTGAAGATATT GGTTATATG AGT CGTATAGCC TTTGTTATGGATCGT feoB 576285 - 578423 + | ferrous iron uptake transporter protein B stu0609 578810 - 579034 + | hypothetical protein stu0610 579282 - 579473 + | hypothetical protein TERM 766 579523 - 579541 + F 85 -6.7 -5.22289 | opp_overlap 579523 GAATAATCAGACGAA GTTGGGA CAAGT TCCCAGC TTTTTGTGTTTCATC folD 579634 - 580500 + | methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase stu0612 580504 - 581340 + | hypothetical protein TERM 767 581350 - 581370 + F 86 -6.1 -5.58209 | opp_overlap 581350 581352, overlap 581352 TTATAAATCTGAAAA CATGTCTCA AAT TGAGGCAAG TTTTTTTAAATTTCG TERM 768 581685 - 581669 - g 75 -3 -5.21709 | TTTTATACTAAAAAA TTAGAG GATAA CTCCAA GTATACGGTTAGGAT pbp2B 581462 - 583576 + | penicillin-binding protein 2B TERM 769 583609 - 583587 - f 72 -4.8 -4.80656 | opp_overlap 583587, overlap 583582 ACTAATAATATAAAA TCTCTTGTGC CTT GCATGAGAGA TTTTTCTGTGATATA TERM 770 583587 - 583609 + F 100 -9.2 -5.02502 | opp_overlap 583587 583582 ACTAATAATATAAAA TCTCTTGTGC CTT GCATGAGAGA TTTTTCTGTGATATA recR 583686 - 584282 + | recombination protein RecR TERM 771 584288 - 584306 + F 84 -5.2 -5.50774 | opp_overlap 584288 584290, overlap 584290 AGAACTGTAGAAAAA GTGTTGGT ATA GCCAACCC TTTTTGTTTATTGTC TERM 772 584306 - 584288 - f 73 -4.5 -4.88388 | opp_overlap 584288 584290, overlap 584290 AGAACTGTAGAAAAA GTGTTGG TATAG CCAACCC TTTTTGTTTATTGTC stu0615 584425 - 584796 + | BglG family transcriptional antiterminator, truncated stu0616 584904 - 585221 + | BglG family transcriptional antiterminator, truncated stu0617 585441 - 585938 + | putative metalloprotease TERM 773 586034 - 586024 - g 71 -6.8 -4.08557 | GCTGTTAAAGAAGAA CGCA ACA TGCG TAAACATTTGGTATC dgk 585919 - 586323 + | diacylglycerol kinase era 586342 - 587241 + | GTP-binding protein Era TERM 774 587247 - 587264 + F 80 -6.9 -4.55295 | opp_overlap 587247, overlap 587248 587251 AGAATACTAAGAAAA GCTGGGC ACTT GCTCGGC TTTCTTTCTAGAAGG mutM 587288 - 588109 + | formamidopyrimidine-DNA glycosylase TERM 775 588240 - 588254 + G 70 -8.6 -3.34344 | AGGGGGAAGATTGTA TCAAGC CTT GCTTGA TTGGTTGGGAGATGG coaE 588085 - 588699 + | dephospho-CoA kinase pmrA 588750 - 589973 + | drug:H+ antiporter-1 (DHA1) family protein TERM 776 590044 - 590032 - g 71 -4.1 -4.98128 | ACAAGTAAAAATAAA CAGAA TCA TCCTG AGAAAATTCAGGTAC rpmG 589963 - 590109 + | 50S ribosomal protein L33 secG 590154 - 590390 + | preprotein translocase subunit SecG TERM 777 590391 - 590412 + F 83 -5.9 -5.1925 | CTCTCAAGTAAGTAA TGAGTTGAC TGAG GTTGACTCA TTTTTTGCGTTATAG TERM 778 592879 - 592867 - g 72 -3.4 -5.1285 | AAAAAAGAAAACAAA CCTT TCTAC AAGG ACGTTGCTAAAAAAC rnr 590449 - 592902 + | exoribonuclease R smpB 592924 - 593388 + | SsrA-binding protein TERM 779 593397 - 593425 + F 93 -6.1 -5.85011 | CCGTTAAAACACCTA TCATCTAAGACTG ACC TGGTATTAGATGA TTTTTTTGCTTTTTA TERM 780 594432 - 594416 - g 80 -8.1 -4.3534 | opp_overlap 594421 TCGCAACGATTAAAA CAAATCA TGG TGATTTG GTCATCAAGCTTTTC pplB 593542 - 594948 + | peptidyl-prolyl cis-trans isomerase stu0628 594950 - 595315 + | hypothetical protein TERM 781 595350 - 595320 - T 75 -9.8 -2.77222 | opp_overlap 595325 595348, overlap 595325 ATGAAGGATAAATAG CAAAAGCTGACACA TGA TGGGTCAGCTTTTT AAATGTCATTTGAAT TERM 782 595345 - 595325 - T 100 -9.7 -4.53036 | opp_overlap 595325, overlap 595320 GGATAAATAGCAAAA GCTGACACA TGA TGGGTCAGC TTTTTAAATGTCATT TERM 783 595325 - 595345 + T 100 -9.7 -4.72333 | opp_overlap 595325 595320 GGATAAATAGCAAAA GCTGACACA TGA TGGGTCAGC TTTTTAAATGTCATT pepQ 596503 - 595418 - | dipeptidase TERM 784 597025 - 597008 - g 85 -4.1 -5.63103 | opp_overlap 597008 TGGCAAGTAAAAAAA CAACTAC TGTA GGAGTTG TCATTCCAAATATTG ccpA 596785 - 597819 + | catabolite control protein TERM 785 597821 - 597854 + F 83 -6.8 -5.00616 | opp_overlap 597823 597826, overlap 597823 597826 AGTCAACAAAATAAA AAGGAGTTGGGACA TCAGCT TGTCTCAACTTCTC TTTTTTAGAAAAAGG TERM 786 597823 - 597852 + F 89 -9.4 -4.13561 | opp_overlap 597823 597826, overlap 597821 597826 TCAACAAAATAAAAA GGAGTTGGGACA TCAGCT TGTCTCAACTTC TCTTTTTTAGAAAAA TERM 787 597852 - 597823 - f 86 -5 -5.62288 | opp_overlap 597823 597821 597826, overlap 597826 TCAACAAAATAAAAA GGAGTTGGGACA TCAGCT TGTCTCAACTTC TCTTTTTTAGAAAAA TERM 788 597826 - 597849 + F 78 -7.5 -4.18465 | opp_overlap 597826 597823, overlap 597823 597821 ACAAAATAAAAAGGA GTTGGGACA TCAGCT TGTCTCAAC TTCTCTTTTTTAGAA stu0631 597878 - 598075 + | hypothetical protein stu0632 598181 - 598945 + | hypothetical protein grk 598960 - 600075 + | glycerate kinase, putative TERM 789 600103 - 600087 - T 79 -4.3 -5.38549 | overlap 600088 GTGAAACAAGAAAAA GCTGACC AGG GGCCAGA TCAGATGTTATTATT TERM 790 600102 - 600088 - T 73 -7.8 -3.81503 | overlap 600087 TGAAACAAGAAAAAG CTGACC AGG GGCCAG ATCAGATGTTATTAT stu0634 600569 - 600114 - | hypothetical protein eno 600778 - 602082 + | phosphopyruvate hydratase TERM 791 602107 - 602126 + T 95 -8.6 -5.5208 | opp_overlap 602102 602107 AATATAGAATGGAAA GAGGTTCC TTGG GGAATCTC TTTTTTGTCTTCTCA TERM 792 602226 - 602200 - T 100 -9.5 -5.46657 | opp_overlap 602200 CATCTGAATAAAAAA TTCCCTCAATC CTATT GATTGGGGGAA TTTAGGCTTAGAATA TERM 793 602200 - 602226 + T 90 -11.7 -3.66654 | opp_overlap 602200 CATCTGAATAAAAAA TTCCCTCAATC CTATT GATTGGGGGAA TTTAGGCTTAGAATA stu0636 604766 - 602580 - | hypothetical protein TERM 794 605391 - 605403 + G 71 -6.3 -4.18018 | ATGAAAAAATTCGCT TCAAG GGC CTTGA TTTTGAGTCAGACCA stu0637 604928 - 606091 + | hypothetical protein aroD 606088 - 606765 + | 3-dehydroquinate dehydratase aroE 606755 - 607612 + | shikimate 5-dehydrogenase aroB 607625 - 608692 + | 3-dehydroquinate synthase TERM 795 609334 - 609320 - g 82 -4.2 -5.40004 | opp_overlap 609327 609328 609330 GACCAAATCAAAAAA GAGGGT GAC ACCATC GGTGGTGTCGTTGAA aroF 608693 - 609859 + | chorismate synthase tyrA 609889 - 610995 + | prephenate dehydrogenase stu0643 611005 - 611343 + | hypothetical protein hdhL 611399 - 612349 + | L-2-hydroxyisocaproate dehydrogenase aroA 612430 - 613713 + | 3-phosphoshikimate 1-carboxyvinyltransferase aroK 613706 - 614197 + | shikimate kinase pheA 614188 - 615012 + | prephenate dehydratase stu0649 615024 - 616454 + | negative transcriptional regualtor-PBP synthesis, truncated TERM 796 616461 - 616487 + T 100 -9.5 -5.27779 | opp_overlap 616464, overlap 616464 TTTAGATAAGAAAAC AAAGCAGGTTC ACACC GAACCTGCTTG TTTTTTGGTATTAAG TERM 797 616484 - 616464 - T 100 -11.9 -4.94168 | opp_overlap 616461 616464 AGATAAGAAAACAAA GCAGGTTCA CAC CGAACCTGC TTGTTTTTTGGTATT TERM 798 616464 - 616484 + T 100 -11.2 -4.71318 | opp_overlap 616464, overlap 616461 AGATAAGAAAACAAA GCAGGTTC ACACC GAACCTGC TTGTTTTTTGGTATT eetB 617411 - 616470 - | exfoliative exotoxin B, putative TERM 799 617297 - 617335 + g 90 -11.3 -3.93288 | gap 1, opp_overlap 617291 617293 617300 617306, overlap 617300 AGCCAAAAACAGCTA TAAGCCAA-ATACCCTGT GAAA ACAGGGTATATTGACTTA TTTGATTGGATAAAC TERM 800 617300 - 617332 + g 79 -8.6 -4.09321 | gap 1, opp_overlap 617291 617293 617300 617306, overlap 617297 CAAAAACAGCTATAA GCCAA-ATACCCTGT GAAA ACAGGGTATATTGAC TTATTTGATTGGATA TERM 801 617332 - 617300 - G 82 -10.8 -3.48994 | gap 1, opp_overlap 617300 617297, overlap 617291 617293 617306 CAAAAACAGCTATAA GCCAA-ATACCCTGT GAAA ACAGGGTATATTGAC TTATTTGATTGGATA TERM 802 617325 - 617306 - G 86 -10.8 -3.81339 | opp_overlap 617300 617297, overlap 617300 617291 617293 CAGCTATAAGCCAAA TACCCTGT GAAA ACAGGGTA TATTGACTTATTTGA stu0651 618491 - 617427 - | hypothetical protein TERM 803 617502 - 617477 - G 74 -9.1 -3.59202 | CACTCGGAGATACAA TTGGAAGGAAG ACGC CTTCATTCCAA CGACGGATAAAGCTT mip 619079 - 618531 - | macrophage infectivity potentiator-related protein, putative TERM 804 619102 - 619134 + H 84 -3.6 -5.67063 | gap 2, opp_overlap 619106, overlap 619106 ATTCTCCTTTAGATA GAAACGACATCTAGCA AGT TGCT-GA-GTCGTTTA TTTTTTTGTCATGGA TERM 805 619106 - 619130 + H 79 -4.4 -5.27709 | gap 2, opp_overlap 619106, overlap 619102 TCCTTTAGATAGAAA CGACATCTAGCA AGT TGCT-GA-GTCG TTTATTTTTTTGTCA TERM 806 620339 - 620329 - g 72 -3.2 -5.09204 | AGATGCTAAGAAAAA TGCA GAA CGCA ACGGCATTACAAATG stu0653 619295 - 620656 + | TrmA family tRNA methyltransferase stu0654 620851 - 621696 + | hypothetical protein TERM 807 621704 - 621734 + F 95 -9 -4.87665 | overlap 621705 GGAAATAATGACGGG TGCACTCTGGTGAA TAA TTCCCTAGAGTGCC TTTTTATCACTCAAA TERM 808 621705 - 621733 + F 93 -12.5 -3.52117 | overlap 621704 GAAATAATGACGGGT GCACTCTGGTGAA TAA TTCCCTAGAGTGC CTTTTTATCACTCAA stu0655 622082 - 622258 + | site-specific DNA-methyltransferase (adenine-specific) LlaI, truncated TERM 809 622397 - 622378 - f 70 -2.2 -5.28315 | ATAAAATGGAAAAAA GTTATTTT ACCT ATAATAAC TACACACCTCTCGCT stu0656 623139 - 623750 + | hypothetical protein TERM 810 623814 - 623781 - f 82 -5.4 -5.26119 | opp_overlap 623788, overlap 623783 623788 TGTTCAAAAATAAAA TCCAAAACCAAGTC TAAGCT GACTTGGTTTTTTA CATGAGCAAAGTCGT TERM 811 623788 - 623807 + F 88 -7.9 -5.08824 | opp_overlap 623788 623783 623781 AAATAAAATCCAAAA CCAAGTC TAAGCT GACTTGG TTTTTTACATGAGCA TERM 812 623807 - 623788 - f 82 -7.9 -4.49716 | opp_overlap 623788, overlap 623783 623781 AAATAAAATCCAAAA CCAAGTC TAAGCT GACTTGG TTTTTTACATGAGCA TERM 813 626017 - 625990 - g 85 -2.8 -5.72254 | overlap 625993 TCAAACAAGAAAAAA GAATACCTCCTT ACAG AAGAAGATATTT CAAAGTTTGATGTTC TERM 814 626014 - 625993 - g 74 -4.5 -4.86954 | overlap 625990 AACAAGAAAAAAGAA TACCTCCTT ACAG AAGAAGATA TTTCAAAGTTTGATG TERM 815 626300 - 626280 - g 79 -3.3 -5.42198 | opp_overlap 626294 GTGGAAAAAACAAAA GAATACCCT TGT AAGTTATTC AGAAGAACAACTCCT TERM 816 626738 - 626710 - g 77 -5.3 -4.95957 | overlap 626711 GAAATGAATGAAAAA GGGAAAGAAGTAC CAT GTAATCCTTTCCT AAAATATAAAGAAGA TERM 817 626737 - 626711 - g 72 -8.8 -3.55947 | overlap 626710 AAATGAATGAAAAAG GGAAAGAAGTAC CAT GTAATCCTTTCC TAAAATATAAAGAAG stu0657 624007 - 627375 + | hypothetical protein TERM 818 627453 - 627424 - f 75 -8.7 -3.35438 | opp_overlap 627428 627428, overlap 627427 627428 TATCATATGCTATAA TAATCGTGTAAGG GACG CCTTACACAGTTA CTTAAATCTTGCAGA TERM 819 627449 - 627428 - f 73 -9.5 -2.88386 | opp_overlap 627428 627428, overlap 627427 627424 ATATGCTATAATAAT CGTGTAAGG GACG CCTTACACA GTTACTTAAATCTTG TERM 820 627530 - 627498 - f 71 -7.7 -3.57144 | opp_overlap 627502, overlap 627502 GGCTTCATGCCGAAA TCAACACCCTGTCAT TTT ATGGCAGGGTGTTTT CGTTATTTAAAGAGG TERM 821 627502 - 627526 + F 100 -15.1 -4.62203 | opp_overlap 627498 627502 TCATGCCGAAATCAA CACCCTGTCAT TTT ATGGCAGGGTG TTTTCGTTATTTAAA TERM 822 627526 - 627502 - f 93 -12.9 -3.52204 | opp_overlap 627502, overlap 627498 TCATGCCGAAATCAA CACCCTGTCAT TTT ATGGCAGGGTG TTTTCGTTATTTAAA stu0658 627553 - 628464 + | hypothetical protein stu0659 628466 - 628789 + | hypothetical protein TERM 823 628945 - 628924 - g 93 -6.7 -5.40072 | opp_overlap 628924 TTTGGTGGAAAAAAA TACTCAAGT GAGG ACTTAAGTA TTTTTGATTATGAGG TERM 824 628924 - 628945 + G 74 -4.5 -4.93365 | opp_overlap 628924 TTTGGTGGAAAAAAA TACTCAAGT GAGG ACTTAAGTA TTTTTGATTATGAGG stu0660 628786 - 629838 + | hypothetical protein TERM 825 629883 - 629901 + T 70 -3.9 -4.95155 | opp_overlap 629884, overlap 629866 629884 ATGTGGGTATGAAAA TCTCAAA AATCA TTTGAGG TTTTTGTACTCTCAA TERM 826 631998 - 631982 - T 72 -8.1 -3.38178 | opp_overlap 631982 631981 TAAGTAACTGTACAA CATGAAT TAC ATTCATG ATTTTATCGAGTTTG TERM 827 631982 - 631998 + T 70 -8.1 -3.26262 | opp_overlap 631982, overlap 631981 TAAGTAACTGTACAA CATGAAT TAC ATTCATG ATTTTATCGAGTTTG TERM 828 632131 - 632151 + T 74 -6.2 -4.62069 | gap 1, opp_overlap 632123 632131 GATTCAACATAAAAA GCC-AGTTC AATT GAACTTGGC TTTTTAAAATACACG TERM 829 632151 - 632131 - T 83 -6.2 -5.10767 | gap 1, opp_overlap 632131, overlap 632123 GATTCAACATAAAAA GCC-AGTTC AATT GAACTTGGC TTTTTAAAATACACG stu0661 632970 - 632155 - | hypothetical protein TERM 830 632770 - 632740 - G 76 -9 -3.69621 | overlap 632741 AGTGAGAACTGGAAA TGCCAAGAGAACGA TGC TGGTTCCCTTGGCC ACTCGACCTGACAAA TERM 831 632769 - 632741 - G 83 -12.5 -2.81291 | overlap 632740 GTGAGAACTGGAAAT GCCAAGAGAACGA TGC TGGTTCCCTTGGC CACTCGACCTGACAA stu0662 633872 - 632970 - | hypothetical protein tex 634236 - 636368 + | transcriptional regulator, putative stu0664 636355 - 636795 + | hypothetical protein TERM 832 636801 - 636786 - f 71 -7.6 -3.54543 | opp_overlap 636786 ACTCATTTTTCTAAA TCAGTC CTAG GACTGA TTTTTTTTTGTCTCA TERM 833 636786 - 636801 + F 100 -7.6 -6.30182 | opp_overlap 636786 ACTCATTTTTCTAAA TCAGTC CTAG GACTGA TTTTTTTTTGTCTCA TERM 834 636832 - 636822 - f 70 -4 -5.00616 | TTTTGTCTCAAAAAA TCAT ACA ATGA TATCAACGAAATGAT stu0665 636862 - 637125 + | hypothetical protein TERM 835 637144 - 637177 + F 100 -7.6 -6.02546 | AATGATAACAGAAAA GATCTATGATTGAC CTTAGT GTTAGTCATAGGTC TTTTTTTTGCTTTGC ptsK 637254 - 638183 + | HPr kinase/phosphorylase lgt 638183 - 638974 + | prolipoprotein diacylglyceryl transferase stu0668 639004 - 639495 + | hypothetical protein TERM 836 639796 - 639782 - g 78 -2.8 -5.4505 | opp_overlap 639793, overlap 639766 CCGTTCAAGAAAAAA CAGC TCAAGTT GCTG ACTTTGCAAAAGAGA TERM 837 639858 - 639836 - g 83 -4.8 -5.30155 | overlap 639838 TCATCAAGGAAAAAA CAGCTCAAGT AAC ACCTGAGCAA GCCAATGTTAAAGCA TERM 838 639856 - 639838 - g 89 -9.6 -4.27681 | overlap 639836 ATCAAGGAAAAAACA GCTCAAGT AAC ACCTGAGC AAGCCAATGTTAAAG stu0669 639508 - 639942 + | hypothetical protein TERM 839 639947 - 639982 + T 95 -15 -2.7976 | opp_overlap 639952, overlap 639952 TAGCAGAATAAAATT AAAAAGAACGTTGACT CCTT AGTCAACGTTCTTTTG CTTTAAGATATTCGA TERM 840 639952 - 639977 + T 100 -14.9 -4.55798 | opp_overlap 639952, overlap 639947 GAATAAAATTAAAAA GAACGTTGACT CCTT AGTCAACGTTC TTTTGCTTTAAGATA TERM 841 639977 - 639952 - T 100 -14.9 -5.17786 | opp_overlap 639952 639947 GAATAAAATTAAAAA GAACGTTGACT CCTT AGTCAACGTTC TTTTGCTTTAAGATA stu0670 640265 - 639969 - | hypothetical protein TERM 842 640697 - 640675 - g 76 -9.2 -3.67296 | overlap 640677 CATGAGTCAGGTAAA GAGTTAACTG TTG CAGTTAACGC CCTCATGCACCAAAG TERM 843 640695 - 640677 - g 77 -10.4 -3.41569 | overlap 640675 TGAGTCAGGTAAAGA GTTAACTG TTG CAGTTAAC GCCCTCATGCACCAA stu0671 640498 - 641427 + | protease TERM 844 641570 - 641542 - g 73 -2.4 -5.33848 | gap 1, opp_overlap 641543 641543, overlap 641543 641544 ACTACAACTAAAAAA CGCCCAG-AGGTA CTGG TACCTGCTGGGAC TTTGGAAAAATTGAG TERM 845 641568 - 641544 - g 71 -9.4 -2.86125 | gap 1, opp_overlap 641543 641543, overlap 641543 641542 TACAACTAAAAAACG CCCAG-AGGTA CTGG TACCTGCTGGG ACTTTGGAAAAATTG TERM 846 642485 - 642465 - g 72 -4.6 -4.67608 | GACTCCAACAGAAAA CGAGCAAC TCTTT GGTGCCCG TCGTAAGATTCCACA stu0672 641506 - 642810 + | U32 family peptidase TERM 847 643133 - 643170 + T 100 -13.7 -6.01187 | opp_overlap 643133 TTTGAAAAATAAAAA GATTGAAGATTCTGTTC ACAG GAACAAAGTCTTCAATC TTTTTTTCTTTAGTT TERM 848 643170 - 643133 - T 100 -13.7 -5.61881 | opp_overlap 643133 TTTGAAAAATAAAAA GATTGAAGATTCTGTTC ACAG GAACAAAGTCTTCAATC TTTTTTTCTTTAGTT bioY1 643719 - 643180 - | biotin synthase TERM 849 643821 - 643797 - R 95 -8.7 -5.63236 | opp_overlap 643799, overlap 643813 643818 ACTCAAAAATAAAAA GAGGTTAACTA ATA TACTTAACCTC GTTGAGATATGATTT stu0675 644104 - 643814 - | hypothetical protein stu0676 644224 - 644436 + | hypothetical protein TERM 850 644468 - 644434 - T 79 -9.4 -3.3422 | opp_overlap 644439, overlap 644439 GACGCCTTCAAAAAC TAAAACAAGGTCAGCA TGG TGCTAGCCTTGTTTTT TTTTTTAAAACGTAT TERM 851 644439 - 644463 + T 100 -9.3 -6.58542 | opp_overlap 644439 644434 CTTCAAAAACTAAAA CAAGGTCAGCA TGG TGCTAGCCTTG TTTTTTTTTTTAAAA TERM 852 644463 - 644439 - T 100 -9.3 -4.77757 | opp_overlap 644439, overlap 644434 CTTCAAAAACTAAAA CAAGGTCAGCA TGG TGCTAGCCTTG TTTTTTTTTTTAAAA mntH 645816 - 644473 - | metal ion (Mn2+-iron) transporter (NRAMP) family protein TERM 853 644974 - 644962 - G 71 -6.9 -4.0031 | AGCGTGACCAAAGAA GAGGG ATG CCCCC AAAATCAAGAGGAGG TERM 854 646022 - 646002 - H 83 -6.3 -4.83615 | TATTGGGGAGAAAAA TAATTGAAA GCA TTTCAACTA ACAGCCAAGAAAAAG TERM 855 646222 - 646208 - g 83 -7.2 -4.71426 | TTGGCATGAAGAAAA TAAAGC ATG GCTTTA TCCTGCTAAACAATA stu0678 646005 - 646313 + | hypothetical protein TERM 856 646348 - 646314 - f 93 -11.7 -3.92832 | opp_overlap 646319 646347, overlap 646319 AAATTTTGGAAATAA GAAAATGTTTCTCTC GAGAT GAGAGAAACATTTTT AAATAACAAATTTAA TERM 857 646343 - 646319 - f 100 -11.6 -5.00196 | opp_overlap 646319, overlap 646314 TTGGAAATAAGAAAA TGTTTCTCTC GAGAT GAGAGAAACA TTTTTAAATAACAAA TERM 858 646319 - 646343 + F 100 -12.3 -4.65895 | opp_overlap 646319 646314 TTGGAAATAAGAAAA TGTTTCTCTCG AGA TGAGAGAAACA TTTTTAAATAACAAA stu0679 646332 - 646805 + | MutT/nudix family protein TERM 859 646803 - 646830 + T 100 -13.6 -4.38203 | opp_overlap 646803 GAATTGTTATCAAAA TAAGAGCATCAC TTAT GTGGTGCTCTTA TTTATTAGTTATGTA TERM 860 646830 - 646803 - T 100 -11.4 -4.2679 | opp_overlap 646803 GAATTGTTATCAAAA TAAGAGCATCAC TTAT GTGGTGCTCTTA TTTATTAGTTATGTA stu0680 648900 - 646828 - | hypothetical protein stu0681 649713 - 648991 - | hypothetical protein TERM 861 649082 - 649106 + g 79 -5.1 -5.15682 | GGGAGCTTTTCTTCA TCATTAATCTT TGT GAGACTAATGA TTTTCTTTCTCTTTT TERM 862 649944 - 649904 - R 82 -9.9 -3.60818 | opp_overlap 649909 649912, overlap 649907 649909 649913 GCAAAATTTTGGAAA TAAGATAATGCTTCTCTCA TTT CGAGAGAAGCGTTATTTCA TATTACCCGATGTGA TERM 863 649941 - 649907 - R 85 -9.4 -3.92832 | opp_overlap 649909 649912, overlap 649904 649909 649913 AAATTTTGGAAATAA GATAATGCTTCTCTCA TTT CGAGAGAAGCGTTATT TCATATTACCCGATG TERM 864 649909 - 649939 + r 100 -13.5 -3.92324 | opp_overlap 649909 649907 649904 649913, overlap 649912 ATTTTGGAAATAAGA TAATGCTTCTCTC ATTTC GAGAGAAGCGTTA TTTCATATTACCCGA TERM 865 649939 - 649909 - R 91 -12 -3.54755 | opp_overlap 649909 649912, overlap 649907 649904 649913 ATTTTGGAAATAAGA TAATGCTTCTCTCA TTT CGAGAGAAGCGTTA TTTCATATTACCCGA TERM 866 649912 - 649936 + r 100 -10.8 -4.08853 | opp_overlap 649909 649907 649904 649913, overlap 649909 TTGGAAATAAGATAA TGCTTCTCTC ATTTC GAGAGAAGCG TTATTTCATATTACC TERM 867 649935 - 649913 - R 86 -12.8 -2.93555 | opp_overlap 649912 649909, overlap 649909 649907 649904 TGGAAATAAGATAAT GCTTCTCTCA TTT CGAGAGAAGC GTTATTTCATATTAC TERM 868 650344 - 650319 - R 100 -9.2 -4.9792 | opp_overlap 650316 650313 650319 650321 TACCTCATATAAAAA TATCCCATTA TTTGAC TAATGGGATA TCATTATTATTTCAT TERM 869 650319 - 650344 + r 74 -9.2 -3.07958 | opp_overlap 650319, overlap 650316 650313 650321 TACCTCATATAAAAA TATCCCATTA TTTGAC TAATGGGATA TCATTATTATTTCAT lysS 651886 - 650351 - | lysyl-tRNA synthetase TERM 870 652009 - 652025 + H 74 -9.4 -3.06492 | opp_overlap 651997, overlap 651996 AAAGCCGAGATGCTT GGCGCT TTACT AGCGCC TATTGGGCTACCTAC stu0693 652144 - 652491 + | hypothetical protein stu0694 652691 - 653245 + | hypothetical protein stu0695 653235 - 653738 + | hypothetical protein TERM 871 653765 - 653789 + F 87 -6.5 -5.4251 | TAAAAAGATCCCTAA GGTTTGGAATG TCA TGTTTCAAACC TTTTTTCTATCTGAA TERM 872 654835 - 654818 - g 74 -4.1 -5.04733 | opp_overlap 654818, overlap 654819 TAACGATAAAGAAAA TCCAGTT CTTC AACTGGG TATTAACAATGGTCT stu0696 654063 - 654965 + | hypothetical protein TERM 873 654966 - 654991 + T 85 -10.5 -3.51365 | opp_overlap 654971, overlap 654971 AAGTATGGAAAATAA AAAAACGGCCT AACG AGGCCGTTTTA TTGTCTAGAATGTGA TERM 874 654971 - 654986 + T 100 -10.4 -4.84311 | opp_overlap 654971, overlap 654966 TGGAAAATAAAAAAA CGGCCT AACG AGGCCG TTTTATTGTCTAGAA TERM 875 654986 - 654971 - T 100 -10.4 -6.09196 | opp_overlap 654966 654971 TGGAAAATAAAAAAA CGGCCT AACG AGGCCG TTTTATTGTCTAGAA TERM 876 655363 - 655344 - T 100 -10 -5.47218 | opp_overlap 655344 TTTCATGCAAAAAAA GCGATCCT GTTA AGGACCGC TTATTTCACGATATA TERM 877 655344 - 655363 + T 76 -7.8 -3.93256 | opp_overlap 655344 TTTCATGCAAAAAAA GCGATCCT GTTA AGGACCGC TTATTTCACGATATA gpmC 656027 - 655389 - | phosphoglycerate mutase stu0698 656503 - 656030 - | transcriptional regulator TERM 878 656619 - 656591 - R 82 -9.7 -3.62522 | opp_overlap 656596, overlap 656596 CAATTTGGGCAAGAA GAAAACCAGTGTC TGA AACACTGGTTTTT ACTCACTAGTAGACG TERM 879 656614 - 656596 - R 100 -9.6 -4.89477 | opp_overlap 656596, overlap 656591 TGGGCAAGAAGAAAA CCAGTGTC TGA AACACTGG TTTTTACTCACTAGT TERM 880 656596 - 656614 + r 93 -8.9 -4.75372 | opp_overlap 656596 656591 TGGGCAAGAAGAAAA CCAGTGT CTGAA ACACTGG TTTTTACTCACTAGT stu0699 657565 - 656618 - | endolysin, putative TERM 881 657031 - 657045 + g 77 -8.6 -3.92592 | CTTGGACACCTTCCT CCATGT TAG ACATGG TTTCCTCTTCAACGT stu0700 658146 - 657757 - | hypothetical protein TERM 882 658325 - 658339 + r 70 -7.1 -3.794 | TTTTTTGATGTTGAT GGCCT CTATA AGGCC TTTGATAGATTAGGA TERM 883 658372 - 658393 + r 100 -10.9 -4.51238 | opp_overlap 658372 ATTGAAATAGAAAAA CTGAGTTCC TTTT GGAGCTCAG TTTGTATTTTATGCC TERM 884 658393 - 658372 - R 95 -8.7 -5.20783 | opp_overlap 658372 ATTGAAATAGAAAAA CTGAGTTCC TTTT GGAGCTCAG TTTGTATTTTATGCC stu0701 659028 - 658402 - | hypothetical protein TERM 885 658751 - 658719 - G 70 -9.3 -3.20633 | opp_overlap 658719 658716, overlap 658723 GGACAATATAGTGAA CTAAGAAATTGCGGA GGG TCCAGAATTTCTCAG GTTCTGTAATAGGAG stu0702 659275 - 659556 + | hypothetical protein TERM 886 660270 - 660250 - f 79 -9.1 -3.42354 | opp_overlap 660250 CACCCCAAGCTAGAA CTTCCTGAT TTT ATCAAGAAG TTGAGTGAATTGACC stu0704 660316 - 661095 + | short chain dehydrogenase/reductase family oxidoreductase TERM 887 662296 - 662284 - g 71 -6.3 -4.19817 | TCCAGCCATTCAAAA GACAA TTT TTGTC GTCGACCGTAGGGAC hsdR1 661355 - 664345 + | type I restriction-modification system restriction subunit stu0706 664335 - 665969 + | hypothetical protein stu0707 665970 - 666869 + | hypothetical protein TERM 888 668066 - 668052 - g 78 -2.9 -5.5112 | overlap 668045 CTCATCAAGAAAAAA TTTCT CAGCT AGAAA CTCTGAAAAAGAAAC hsdS1 666884 - 668104 + | type I restriction-modification system specificty subunit TERM 889 668868 - 668858 - g 70 -5.4 -4.48073 | TTAAAAAAAGAATAA GTTC TGA GAAC AGGAATCTACGAGAT TERM 890 669262 - 669278 + G 71 -5.2 -4.62904 | opp_overlap 669252, overlap 669252 TCAGAGATTATTGAG TCAGAT CAATC ATCTGA TTTTTACCAATATTT stu0709 668119 - 669987 + | hypothetical protein stu0710 670022 - 670774 + | hypothetical protein hsdM1 670817 - 672421 + | type I restriction-modification system methyltransferase subunit TERM 891 672459 - 672477 + F 95 -8.9 -5.4505 | opp_overlap 672458 672459 672461 TCCGAATAATAGAAG TAGAGGG ACCAA CCCTCTA TTTTTTCTTAAGGAG TERM 892 672522 - 672509 - f 74 -3.1 -5.22039 | GGTAAATGGAAAAAA GACAC AAGC ATGTC TCACCGACCTTGAAT stu0712 672628 - 672828 + | hypothetical protein stu0713 673016 - 674020 + | deoxyribonuclease TERM 893 674047 - 674029 - f 100 -7.4 -5.85737 | opp_overlap 674030, overlap 674030 AGAGTAATAAAAAAA GCTGGACA TCT TGTCCAGT TTTTTGTAAAATGAC TERM 894 674030 - 674046 + F 100 -10.9 -5.26316 | opp_overlap 674029 674030 GAGTAATAAAAAAAG CTGGACA TCT TGTCCAG TTTTTTGTAAAATGA TERM 895 674046 - 674030 - f 100 -10.9 -4.09002 | opp_overlap 674030, overlap 674029 GAGTAATAAAAAAAG CTGGACA TCT TGTCCAG TTTTTTGTAAAATGA lemA 674171 - 674731 + | cytoplasmic membrane protein TERM 896 675398 - 675413 + G 83 -7.6 -4.68994 | GGTTCAGTTGGCTAT TTCACG CCAG CGTGAA TTTTTAGCTGATGCT htpX 674733 - 675632 + | heat shock protein HtpX TERM 897 675640 - 675663 + F 77 -6 -4.66535 | opp_overlap 675642, overlap 675642 AAATGTAATTCAGGG AAGGCTAATC ATGT GATTGGCCTC TTTCTTTTAGCAGTT TERM 898 675642 - 675661 + F 82 -8.6 -3.93868 | opp_overlap 675642, overlap 675640 ATGTAATTCAGGGAA GGCTAATC ATGT GATTGGCC TCTTTCTTTTAGCAG TERM 899 675772 - 675786 + G 70 -5.7 -4.37886 | opp_overlap 675760 675768 675772 TAACGATTCAACGAA TGGCT CGGAT AGCCA TTTTGTCAGCACTGG stu0716 675750 - 676223 + | hypothetical protein stu0717 676220 - 676615 + | hypothetical protein TERM 900 676623 - 676639 + F 85 -6.6 -5.27923 | ATAATTAAGATTTTA GACTCT AATTC AGAGTC TTTTTTATAAAGTTC ppc 676789 - 679611 + | phosphoenolpyruvate carboxylase TERM 901 679621 - 679642 + F 80 -5.1 -5.22006 | GGTTAATAAAGTAAA GTTCATCGC TTCG GTGGTGAGC TTTTTGTTATAATGA holA 679679 - 680713 + | DNA polymerase III subunit delta TERM 902 680730 - 680719 - f 82 -4.4 -5.54264 | opp_overlap 680719 680723, overlap 680720 680721 AAACAGCTAAAAAAA TGGA GATT TCCA AGATTTTGTAAGCAA sodA 680751 - 681413 + | superoxide dismutase (Mn) TERM 903 681423 - 681442 + F 95 -8.6 -5.69473 | opp_overlap 681423 681422 681425 AAATAAGTCTAGAAT CATCCTCA GTCT TGAGGGTG TTTTTTTGTAATATG TERM 904 681815 - 681795 - g 86 -10.5 -4.00868 | TTACTTAGAAGTAAA CGCTCTAAA AAA TCTAGAGCG AAATCATTCAGTGAT stu0721 681510 - 682889 + | hypothetical protein TERM 905 682900 - 682913 + T 78 -2.3 -5.74122 | opp_overlap 682900 ATTAATACTGAAAAG GCCAA TTAT TCGGC TTTTTTTCTATACTA pilD 683576 - 682929 - | prepilin peptidase type IV TERM 906 683338 - 683324 - G 71 -5 -4.63044 | AGTCATAGAAATAAA GAAGAA GTA TTCCTC CACAAAACAATTCCA TERM 907 684008 - 684043 + G 71 -9.9 -2.89039 | opp_overlap 684012, overlap 684012 TACTGGTACATTTGA TCAACCAATGTCTGA TCGAAT TCAGCTATTGGTTGA TATATACAAATACTT dpr 683685 - 684206 + | peroxide resistance protein,non-heme iron-containing ferritin fur 684295 - 684732 + | ferric transport regulator protein TERM 908 684739 - 684761 + F 83 -6.3 -5.00642 | opp_overlap 684739 TGTCAATAGATAAGA GTCTAAGTC AAATA GACTTGGGC TTTTTGTCTAGGTTG TERM 909 684914 - 684891 - f 75 -9.6 -2.74012 | opp_overlap 684892, overlap 684877 684896 CTATTAGGCTAAGTA GCCAAGGCTA ATAA TAGCCTTGGT TTAGCTGACAAAACA TERM 910 684892 - 684913 + F 95 -13.1 -3.64703 | opp_overlap 684877 684891 684896 TATTAGGCTAAGTAG CCAAGGCTA ATAA TAGCCTTGG TTTAGCTGACAAAAC TERM 911 685035 - 684981 - g 76 -4.4 -5.13343 | gap 1 TAAGGCAAAAGAAAA CACCTCTGTGCTAT-ACTTGTGGTT CACCAC AAACACAAGGAAGGGCACAGAGATG CAAAATCATTATACA stu0725 684946 - 685128 + | truncated IS1239 transposase TERM 912 685304 - 685292 - g 70 -3.4 -4.96028 | CGGTAAAAAAAATAA TCCT AACGA AGGA AATGAAAGAGAAAAT TERM 913 685903 - 685886 - g 74 -4.9 -4.81082 | gap 1, opp_overlap 685886 AAGGAACCAAGAAAA CGAC-TCT GAA AGAAGTCG CTTTTATCGAAAATT stu0726 685138 - 685986 + | truncated IS1239 transposase stu0727 686087 - 686293 + | hypothetical protein glcK 686286 - 687254 + | glucose kinase TERM 914 688642 - 688620 - g 88 -11.4 -3.55622 | TTGAACGTGTTCAAA TTGATACTCC AGA GGAGTACCAA GGCTCAATCATCCAA typA 687392 - 689239 + | GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A) TERM 915 689239 - 689226 - f 83 -2.3 -5.83226 | opp_overlap 689226, overlap 689227 AACGTAAGAAAAAAA GCAGC GAAA GCTGA GTAATTTTTAGAGAG stu0730 689263 - 689535 + | hypothetical protein TERM 916 689548 - 689566 + F 90 -8.2 -5.38047 | opp_overlap 689548 TAGCATGATATTAAA GTCAATCT GTT AGATTGGC TTTTTTCTGTAACTA murD 689658 - 691010 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase murG 691014 - 692084 + | N-acetylglucosaminyl transferase TERM 917 692555 - 692545 - g 81 -5.4 -5.03145 | CAACTGTTGAAAAAA CCAA CGT TTGG GTTAAAAAGGCTACG TERM 918 693092 - 693073 - g 74 -5 -4.69415 | AGGAAGACAAAGAAA TTTCTGAC GAGG GTCAGGAA ACAACGACACTAACT divIB 692094 - 693218 + | cell division protein TERM 919 693255 - 693235 - f 74 -3.4 -5.30348 | gap 1, opp_overlap 693235, overlap 693226 ATTGAATAATAAAAA CGT-AAATG CTGA CATTTTACG TTTTTTTATGGTACA TERM 920 693235 - 693255 + F 82 -3.4 -5.67063 | gap 1, opp_overlap 693226 693235 ATTGAATAATAAAAA CGT-AAATG CTGA CATTTTACG TTTTTTTATGGTACA ftsA 693342 - 694718 + | cell division protein ftsZ 694747 - 696069 + | cell division protein FtsZ TERM 921 696106 - 696095 - g 81 -3 -5.64321 | AGAAGAAAATAAAAA TGAT GTTT ATCA GGCGGTGAAGAGAGC stu0736 696072 - 696755 + | hypothetical protein TERM 922 696913 - 696898 - g 79 -9 -3.80858 | CAACAGCAACGTAAA CCTGAG CGTC CTCAGG AAACAGTCCCTCCTC stu0737 696760 - 697329 + | hypothetical protein stu0738 697333 - 697590 + | hypothetical protein stu0739 697590 - 698390 + | hypothetical protein TERM 923 698418 - 698406 - f 81 -7.7 -4.28774 | GTATTTAATTTAAAA GCATC AGA GATGC TAATGAAACTTGAGG TERM 924 698488 - 698476 - f 72 -4.9 -4.69664 | opp_overlap 698476 GATATTATCGAAAAA TAGTT TAC AACTA AATTTTGTGGATATA divIVA 698634 - 699509 + | cell division initiation protein TERM 925 699691 - 699719 + F 89 -7.5 -5.35815 | CTAAGGTGGTACCAC GAGCTTTCGTC CTTTTTT GATGAAGGCTC TTTTTATTTAGTATA ileS 699757 - 702546 + | isoleucyl-tRNA synthetase TERM 926 702586 - 702554 - T 71 -5.2 -4.55128 | gap 2, opp_overlap 702557 702561, overlap 702557 AGGTTTAAAGCAAAA TA-AGCTAA-AAAGAG TTG CTCTTTGTTAGCTGTA GTGGGTGACGAAAAG TERM 927 702582 - 702557 - T 89 -8.5 -4.38472 | gap 1, opp_overlap 702557 702561, overlap 702554 TTTAAAGCAAAATAA GCTAA-AAAGAG TTG CTCTTTGTTAGC TGTAGTGGGTGACGA TERM 928 702612 - 702634 + T 100 -9.9 -4.74706 | AAAAGATAACATCTA GAGAGGACC ATATA GGTCTTCTC TTTTTGAATGTTCAG stu0743 703167 - 702931 - | truncated IS1193 transposase TERM 929 703652 - 703605 - H 100 -18.1 -4.70659 | opp_overlap 703576 703604 703603 GTGTATACTTAAAAA GCTCTATAATCTCTACAGTGG TTTTAC CCACTACAGAAATTATAGAGC CAATTTTTCAGAAAA TERM 930 704941 - 704921 - g 80 -4.7 -5.25772 | overlap 704912 704909 704922 AAATGAGAAGAAAAA TCTTCCAAC TTG GTTGAAAGG GCTTGCTATTGCAGG TERM 931 704940 - 704922 - g 70 -8.2 -3.73023 | overlap 704912 704909 704921 AATGAGAAGAAAAAT CTTCCAAC TTG GTTGAAAG GGCTTGCTATTGCAG stu0745 703761 - 704972 + | hypothetical protein TERM 932 705034 - 705053 + T 95 -8.6 -4.98128 | opp_overlap 705034 GATAAGATGATTAAA CAGTTTCC CTTG GGAAGCTG TTTCTTTTTAATTCT TERM 933 705127 - 705108 - T 95 -8.6 -5.12474 | GAGAACACAGAAAAA GCCATTCC AATT GAAATGGC TTAACAACAAGAGGT rpmE2 705388 - 705146 - | 50S ribosomal protein L31 type B TERM 934 705409 - 705431 + r 74 -2 -5.54264 | opp_overlap 705429, overlap 705412 705429 AATATTTCCTTTCTG CCATGGTA CTTTCCA TACCATAG TTTTTTTAACTATTT apbE 706432 - 705494 - | lipoprotein involved thiamine biosynthesis stu0748 707357 - 706413 - | hypothetical protein TERM 935 707428 - 707409 - R 88 -7.8 -5.06585 | GAAATTATAGAAAAA CGGTTAGC CTAG GCAAACCG TTACAAAAATTAGAT stu0749 708256 - 707438 - | putative glutathione S-transferase YghU add 708396 - 709406 + | adenosine deaminase tdk 709635 - 710231 + | thymidine kinase TERM 936 711140 - 711124 - g 83 -9.5 -3.87075 | overlap 711134 ACCATTTTGCACAAA TTGCTCA AGA TGAGCAA GATGCTGAGCGTAAA prfA 710268 - 711347 + | peptide chain release factor 1 TERM 937 712036 - 711999 - g 100 -12.9 -4.1399 | CCATTTATAGACAAA TCCTTGAGGACGCAGAT AAGT ATCTAAATCCTCAAGGA AAACTCTATTTTGAG hemK 711344 - 712177 + | protoporphyrinogen oxidase stu0754 712164 - 712769 + | Sua5/YciO/YrdC family protein glyA 712864 - 714114 + | serine hydroxymethyltransferase TERM 938 714231 - 714253 + GF 73 -2 -5.31275 | overlap 714232 714233 ACGTTTAGATGAGTA TTTTAGAAAG AAA CTCTCTAAGG TTTTTTCTGATGAGG TERM 939 714408 - 714393 - gf 81 -7.6 -4.4261 | opp_overlap 714393 TTCTGAAGATCAAAA GACCAA TGAT TTGGTC TTTATTCAGTTTGAT TERM 940 714393 - 714408 + GF 81 -7.6 -4.29929 | opp_overlap 714393 TTCTGAAGATCAAAA GACCAA TGAT TTGGTC TTTATTCAGTTTGAT stu0756 714121 - 715098 + | hypothetical protein stu0757 715046 - 715711 + | hypothetical protein TERM 941 715893 - 715909 + GF 73 -2.3 -5.2015 | opp_overlap 715893 715888 AAATAGAGACCAAAA TCATC TGTTTAT GATGA TTTTTCTCTTGTTCG stu0758 715744 - 717483 + | lipid/multidrug/protein-type ABC exporter, ATP binding/membrane-spanning protein stu0759 717350 - 719221 + | lipid/multidrug/protein-type ABC exporter, ATP binding/membrane-spanning protein TERM 942 719228 - 719245 + F 100 -7 -6.21477 | opp_overlap 719227 AATAATTAAAAATTT CAGAGC GTTTAG GCTCTG TTTTTTTTTGCTATT TERM 943 719435 - 719415 - g 75 -2.6 -5.28983 | GTTAAAACACAAAAA TGTCCT CGTCTTTTT AGGACA AACTTTGCTTTATTT dltX 719263 - 719529 + | component involved in D-alanylation of teichoic acids, putative TERM 944 719594 - 719572 - g 88 -11.4 -3.71265 | overlap 719573 AAGATATGATTGAAA CGATTGAGCA GTT TGCTCAATCA CAACCCGACTTTCCT TERM 945 719593 - 719573 - g 83 -12.7 -2.82036 | overlap 719572 AGATATGATTGAAAC GATTGAGCA GTT TGCTCAATC ACAACCCGACTTTCC dltA 719538 - 721088 + | D-alanine--D-alanyl carrier protein ligase TERM 946 721222 - 721234 + G 71 -6.3 -4.14859 | overlap 721217 TATTTATGAATGCTT GGTAA GTA TTACC TTTATCGTTCTTGCT dltB 721085 - 722332 + | integral membrane protein dltC 722350 - 722589 + | D-alanine--poly(phosphoribitol) ligase subunit 2 dltD 722582 - 723850 + | extramembranal protein TERM 947 723912 - 723944 + T 100 -11.4 -4.69549 | opp_overlap 723912 ATTAATTTACACAAA GGACTTAGTTCTGT ATTGC ACAGGACCAAGTCC TTTTAATTTTACCTT TERM 948 723944 - 723912 - T 100 -12.1 -4.09509 | opp_overlap 723912 ATTAATTTACACAAA GGACTTAGTTCTGTA TTG CACAGGACCAAGTCC TTTTAATTTTACCTT stu0765 724121 - 723903 - | hypothetical protein stu0766 724391 - 724185 - | hypothetical protein stu0767 724740 - 724405 - | hypothetical protein stu0768 724981 - 724799 - | hypothetical protein stu0769 725252 - 724974 - | hypothetical protein TERM 949 725258 - 725303 + r 85 -10.6 -3.51976 | opp_overlap 725261, overlap 725255 725259 725271 TTAATTTCATAATAA AAACACCCCAAAAGTTAGAT TTTTCT ATCTAACTTTTGGGGTGCAG TTCATTTAAAGCCTT TERM 950 725259 - 725302 + r 93 -14.1 -2.70704 | opp_overlap 725261, overlap 725258 725255 725271 TAATTTCATAATAAA AACACCCCAAAAGTTAGAT TTTTCT ATCTAACTTTTGGGGTGCA GTTCATTTAAAGCCT TERM 951 725300 - 725261 - R 100 -21.1 -5.19328 | opp_overlap 725259 725258 725255 725271 ATTTCATAATAAAAA CACCCCAAAAGTTAGAT TTTTCT ATCTAACTTTTGGGGTG CAGTTCATTTAAAGC pacL1 728086 - 725450 - | Ca2+, Mn2+-P-type ATPase pabB 729981 - 728263 - | para-aminobenzoate synthetase component I TERM 952 729328 - 729365 + g 73 -7.8 -3.80625 | TTCAGAGCGATTTTT CTGATCATGAGCAAGC CATTGT GCTTGTTTAAGGTCAG TTTCAGTTGTCAAGC TERM 953 730071 - 730061 - H 70 -4 -4.87893 | AATTTTAACCAAAAA TGAA CTT TTCA GATAGTTGTATATAT stu0784 730128 - 730463 + | unknown protein, phage associated TERM 954 730566 - 730587 + F 100 -9.5 -5.52384 | opp_overlap 730564 730562 730566 730567, overlap 730567 730586 AAAAAGTAAGATATA TCTCTAGAC AAAA GTCTAGAGG TTTTTTTGATAAAAA TERM 955 730567 - 730586 + F 93 -10.8 -3.90707 | opp_overlap 730567 730566 730564 730562, overlap 730566 AAAAGTAAGATATAT CTCTAGAC AAAA GTCTAGAG GTTTTTTTGATAAAA TERM 956 730586 - 730567 - f 80 -10.8 -2.5028 | opp_overlap 730566 730567, overlap 730566 730564 730562 AAAAGTAAGATATAT CTCTAGAC AAAA GTCTAGAG GTTTTTTTGATAAAA TERM 957 733002 - 732991 - g 72 -4.4 -4.66537 | opp_overlap 732991, overlap 733001 AAGAAACTAAAGAAA GCTT AACC AAGC TTCTAGAAGCAGCAA metE 730752 - 733040 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 958 734041 - 734029 - g 70 -7.7 -3.76482 | TTATACGATGAATAA TGCAG AGA CTGCA CGTCATATTTACGAA metF 733169 - 734104 + | 5,10-methylenetetrahydrofolate reductase TERM 959 734147 - 734121 - T 100 -11 -5.2015 | opp_overlap 734121 TGAATAATAGAAAAA CCACCTATATAT TTA ATCTATAGGTGG TTTCTTGGTGTAGCA TERM 960 734121 - 734147 + T 100 -11 -4.29106 | opp_overlap 734121 TGAATAATAGAAAAA CCACCTATATAT TTA ATCTATAGGTGG TTTCTTGGTGTAGCA TERM 961 734236 - 734214 - T 100 -12.8 -5.1675 | TCATGTATCAAAAAA GACCTAGAGC TTA GCTCTAAGTC AAAAGTACTATTCAC pgmA 735962 - 734244 - | phosphoglucomutase TERM 962 736006 - 736048 + r 100 -11.7 -4.66163 | gap 1, opp_overlap 736006 736011 TACATTGTATCACAA CTAAAGGAAAAAATCATGCT AATT ACCATG-TTTTTTCCTTTAG TTTTTCAATCGAAGT TERM 963 736048 - 736006 - R 89 -11.7 -3.42078 | gap 1, opp_overlap 736006, overlap 736011 TACATTGTATCACAA CTAAAGGAAAAAATCATGCT AATT ACCATG-TTTTTTCCTTTAG TTTTTCAATCGAAGT stu0788 736620 - 736045 - | hypothetical protein dfp1 737220 - 736645 - | phosphopantothenoylcysteine decarboxylase TERM 964 737093 - 737107 + gr 78 -2.8 -5.41941 | overlap 737094 TCAGTCATAATGACG TGGATA TCA TATCCC TTTTTCTTTAGTTTG dfp2 737866 - 737183 - | phosphopantothenate--cysteine ligase fhs 738060 - 739730 + | formate--tetrahydrofolate ligase TERM 965 739751 - 739768 + F 79 -5.5 -5.18357 | AATATTTCTTTAAAG CAGTGCC TATA GGTGCTG TTTTTTGCTCCATTC TERM 966 739946 - 739964 + F 79 -4.6 -5.25735 | overlap 739947 CTAGTAGAAGATGAT TTGAGTTT GTC GAACTCAG TTTTTGATTTTTTAG stu0792 740054 - 740452 + | response regulator (homolog to ciaR Spn), truncated stu0793 740580 - 740879 + | sensor histidine kinase (homolog to ciaH Spn), truncated stu0794 740957 - 741280 + | sensor histidine kinase (homolog to ciaH Spn), truncated stu0795 741282 - 741998 + | sensor histidine kinase (homolog to ciaH Spn), truncated TERM 967 742076 - 742110 + T 100 -17.2 -3.68302 | opp_overlap 742069 TAAAATATTAGGCGA CGGCCTTGTTCCTCAT TTC AAGAGGGGCAAGGCCG TTATTGCGCTCTTGA tnpSth1 742937 - 742068 - | IS3 familytransposase orf2 tnpSth1 743692 - 742952 - | IS3 familytransposase orf1 TERM 968 743646 - 743703 + g 84 -12.3 -3.03452 | opp_overlap 743646, overlap 743658 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCATATTGTTA TERM 969 743703 - 743646 - G 79 -10.1 -3.52874 | opp_overlap 743646 743658 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCATATTGTTA TERM 970 743766 - 743755 - R 86 -5.8 -5.55769 | opp_overlap 743755 TTTGACAAGAAAAAA CTCC TACT GGAG TTTTCGATTAGTTAG TERM 971 743755 - 743766 + r 72 -5.8 -4.32201 | opp_overlap 743755 TTTGACAAGAAAAAA CTCC TACT GGAG TTTTCGATTAGTTAG TERM 972 743793 - 743818 + r 88 -7.5 -4.97405 | opp_overlap 743799 TTAGCCAATTTAGCT GCAAGACGTGA TTTA TCTCGGCTTGC TTTGTTTTTATGAAT rpsT 744010 - 743774 - | 30S ribosomal protein S20 coaA 744999 - 744079 - | pantothenate kinase TERM 973 744797 - 744780 - G 79 -3.5 -5.40072 | gap 1, overlap 744782 CTTTTTGTAAAAAAA TC-CCTTT TGA AAAGGTGA GGTCCTCTGCAGCTC stu0800 745272 - 745913 + | hypothetical protein stu0801 745929 - 746111 + | pyrimidine-nucleoside phosphorylase, truncated stu0802 746193 - 746363 + | pyrimidine-nucleoside phosphorylase, truncated stu0803 746344 - 746730 + | pyrimidine-nucleoside phosphorylase, truncated stu0804 746748 - 747143 + | pyrimidine-nucleoside phosphorylase, truncated stu0806 747483 - 747878 + | deoxyribose-phosphate aldolase, truncated cdd 747853 - 748197 + | cytidine deaminase TERM 974 748723 - 748693 - g 93 -11.4 -4.60977 | opp_overlap 748700 AAGATAATGAGAAAA TTAATTACGTTATC ATC GATGACGTAATTAA AGACCAAAAGAACGT stu0808 748269 - 749396 + | hypothetical protein TERM 975 749447 - 749427 - f 73 -8.3 -3.64103 | opp_overlap 749433 749436 749439 749444, overlap 749436 CACTTAGACCTTAAA CTGGGACAA TTT TTGTCTCAG CAAAGGGAAGCAGTT TERM 976 749433 - 749491 + F 83 -7.7 -4.7254 | opp_overlap 749427 749436, overlap 749436 749439 749444 GACCTTAAACTGGGA CAATTTTTGTCTCAGCAAAGGGAAGCA GTTTA TGATTTCCTTTGCTGATATAATAATTA TTTTTGATAGGAGAT TERM 977 749436 - 749488 + F 93 -9.4 -4.47707 | opp_overlap 749427 749436, overlap 749433 749439 749444 CTTAAACTGGGACAA TTTTTGTCTCAGCAAAGGGAAGCA GTTTA TGATTTCCTTTGCTGATATAATAA TTATTTTTGATAGGA TERM 978 749439 - 749485 + F 86 -11.1 -3.19331 | opp_overlap 749427 749436, overlap 749436 749433 749444 AAACTGGGACAATTT TTGTCTCAGCAAAGGGAAGCA GTTTA TGATTTCCTTTGCTGATATAA TAATTATTTTTGATA TERM 979 749444 - 749480 + F 87 -13.2 -2.91094 | opp_overlap 749427 749436, overlap 749439 749436 749433 GGGACAATTTTTGTC TCAGCAAAGGGAAGCA GTTTA TGATTTCCTTTGCTGA TATAATAATTATTTT stu0809 749495 - 751048 + | carbohydrate ABC uptake transporter ATP-binding protein stu0810 751041 - 752108 + | carbohydrate ABC uptake transporter membrane-spanning protein TERM 980 752161 - 752173 + G 75 -7.7 -4.10657 | opp_overlap 752161 752160, overlap 752167 TCTATGCTGAAATAT TCAGC ACC GCTGA TTTTCACGAGTATCG stu0811 752110 - 753066 + | carbohydrate ABC uptake transporter membrane-spanning protein TERM 981 753090 - 753107 + T 100 -9.9 -5.31275 | opp_overlap 753093 AAGAGTTTCTGATGA GAAGACC CTCG GGTCTTC TTTTTTGTACTCAAA stu0812 753805 - 753170 - | hypothetical protein stu0813 753868 - 755541 + | ATP-dependent DNA helicase TERM 982 755852 - 755863 + G 73 -2.2 -5.23765 | AGAAACTATCTGCAA TGGG ATAT CCTA TTTTTGTATTATTTA stu0814 755605 - 756387 + | ATP-dependent DNA helicase, truncated stu0815 756583 - 757014 + | hypothetical protein aspC1 757019 - 758200 + | aspartate aminotransferase TERM 983 758452 - 758438 - g 73 -5.8 -4.58283 | GAAGGCCTTGAAAAA TTTGAT ACT ATCAAA CACCTTAGCCAAGAA TERM 984 759470 - 759480 + G 76 -6.8 -4.36262 | opp_overlap 759460 759458, overlap 759468 AAATATGGTTCGGTA CCAC ACG GTGG TTTTGGTATCGGTAT asnC 758237 - 759583 + | asparaginyl-tRNA synthetase stu0819 759610 - 760017 + | hypothetical protein TERM 985 760091 - 760113 + T 84 -6.3 -5.10064 | AAAAGCTAACATCTA GAGAGGACC GGATA GGTTTTCTC TTTTTGTATGTTCAG stu0821 760463 - 760245 - | truncated IS1193 transposase stu0822 760757 - 760551 - | truncated IS1193 transposase stu0823 760891 - 760754 - | truncated IS1193 transposase TERM 986 761011 - 760964 - H 100 -18.1 -4.70659 | opp_overlap 760963 760962 GTGTATACTTAAAAA GCTCTATAATCTCTACAGTGG TTTTAC CCACTACAGAAATTATAGAGC CATAATTCTTTTCTT stu0824 761099 - 761479 + | putative translation initiation inhibitor TERM 987 761481 - 761502 + F 100 -9.5 -5.8187 | opp_overlap 761481 761484 761486 CTGAGATTGACTAAG GAAGAGAGC CTAA GCTCTTTTC TTTTTTTCTTAACTA TERM 988 761597 - 761612 + F 84 -6.8 -5.09685 | TAATGGCGTTTTTTA GTTCCC TCTA GGGAGC TTTTTATGTGTCTTA TERM 989 762010 - 762024 + G 71 -5 -4.58466 | overlap 762020 GACATTGTTACGGGT GTTTGT GAG ACAGAC TTTTCTGGTTATCCA stu0825 761653 - 762306 + | hypothetical protein ptpS 762306 - 762749 + | 6-pyruvoyl tetrahydrobiopterin synthase, putative stu0827 762742 - 763458 + | putative coenzyme PQQ synthesis protein TERM 990 763629 - 763604 - g 72 -3.3 -5.10877 | gap 1, opp_overlap 763620 763621, overlap 763587 763605 AGAAGAAATGAAAAA TCTCACT-CTCC TTG GGAGTAAGGAGA CACCTTACATTTTTG stu0828 763533 - 764069 + | 7-cyano-7-deazaguanine reductase TERM 991 764083 - 764103 + F 77 -3.4 -5.55769 | gap 1, opp_overlap 764083, overlap 764076 AATCTAATGATGAAA GTCC-TTAT GAGA ATAATGGAC TTTTTTCTTGTCAAA stu0829 764889 - 765077 + | hypothetical protein stu0830 765282 - 766052 + | hypothetical protein stu0831 766033 - 766923 + | hypothetical protein TERM 992 767533 - 767519 - g 72 -8.6 -3.55801 | ATCAATTTTGCCAAA TCTGGT TAT ACCAGA GATTCGTCAGGCGCT stu0832 766920 - 767894 + | hypothetical protein stu0833 767891 - 768802 + | hypothetical protein stu0835 769091 - 769570 + | dipeptidase, truncated stu0836 769577 - 769813 + | dipeptidase, truncated cspA 770104 - 770313 + | cold shock protein A TERM 993 770324 - 770341 + F 89 -3.3 -5.80003 | GATAAATGAGTTAAA GCATGGG GTGT CCTTTGC TTTTTTATTTATTGC TERM 994 770424 - 770454 + F 83 -10.7 -3.14564 | opp_overlap 770429, overlap 770429 TTTCCCTACAGTTCA TAAAATCCATGTC ACTAC GATATGGATTTTA TTAATCAGAGAGTAG TERM 995 770429 - 770449 + F 77 -6.2 -4.71426 | opp_overlap 770429, overlap 770424 CTACAGTTCATAAAA TCCATGTC ACTAC GATATGGA TTTTATTAATCAGAG cspB 770527 - 770793 + | cold shock protein B TERM 996 770818 - 770835 + F 95 -6.3 -5.80817 | opp_overlap 770818 AAAATCGTGCAAAAG CTGGAGT CATG ACTTCAG TTTTTTTATATTCAG TERM 997 770923 - 770941 + F 100 -11.8 -5.34055 | opp_overlap 770917 AATCATAAATTAGGG CCACTCTA ATA TAGAGTGG TTTTTTAATGTTTAT TERM 998 771122 - 771068 - f 79 -5.3 -5.19879 | gap 1 GTGTAAACACAAAAA GGAATAAATC-CGTTATAGTAGAGTT GCAA AACATTACTAGAAAGAGATTTATTCC TATGACTCAGTTTAC tnp1191 771091 - 772299 + | IS1191 transposase TERM 999 772435 - 772389 - T 100 -19.3 -2.83449 | gap 1, opp_overlap 772401, overlap 772378 772401 AGAGTTTCATAATTA GTATGA-AAAAAATAGAAGAGC ATAG GCTCTTCTATTTTTTATCATAC CTCAATCCCATCGCG TERM 1000 772422 - 772401 - T 100 -11.7 -5.55664 | opp_overlap 772401, overlap 772389 TTAGTATGAAAAAAA TAGAAGAGC ATAG GCTCTTCTA TTTTTTATCATACCT TERM 1001 772401 - 772422 + T 100 -11.7 -5.31877 | opp_overlap 772389 772401 TTAGTATGAAAAAAA TAGAAGAGC ATAG GCTCTTCTA TTTTTTATCATACCT copB 774627 - 772420 - | Cu2+-Cu+-Ag+-P-type ATPase stu0841 775009 - 774818 - | truncated IS1191 transposase stu0842 775614 - 775051 - | truncated IS1191 transposase stu0843 776006 - 775647 - | truncated IS1191 transposase TERM 1002 775975 - 776029 + g 83 -5.3 -5.19879 | gap 1 GTAAACTGAGTCATA GGAATAAATCTCTTTCTAGTAATGTT TCGC AACTCTACTATAACG-GATTTATTCC TTTTTGTGTTTACAC stu0844 777078 - 776053 - | type I restriction-modification system restriction subunit, truncated TERM 1003 776169 - 776183 + g 91 -10 -4.54047 | CACCGGGATCTTGCG CCGCTA ATT TAGCGG TTTTATATGAGGTGA TERM 1004 776498 - 776482 - G 70 -7.9 -3.65542 | overlap 776480 GGCATTCGCAAAATA CGCCGTA CTA TCCGGCG TCATAATCACAAACA TERM 1005 777743 - 777708 - H 95 -13.5 -3.35813 | gap 1, opp_overlap 777708, overlap 777719 CTGGAGTTGAACTAA GGGCGCAAAAATTCTG GATTT CAGAATTT-CGCGCCC TTTTTCTATCTATTG TERM 1006 777708 - 777743 + H 100 -12 -5.09685 | gap 1, opp_overlap 777708 777719 CTGGAGTTGAACTAA GGGCGCAAAAATTCTGG ATT TCAGAATTTC-GCGCCC TTTTTCTATCTATTG cysM2 777824 - 778735 + | cysteine synthase TERM 1007 778941 - 778900 - gf 73 -8.1 -3.53012 | overlap 778901 778930 TTCTCGTTCTGGAAA CCCAACTCGAGAAGCAGTT GAAA AACTAATTGCCGAGTTGGA AGGCGGCACAGCCGG TERM 1008 778940 - 778901 - gf 72 -9.4 -2.71712 | overlap 778900 778930 TCTCGTTCTGGAAAC CCAACTCGAGAAGCAGTT GAAA AACTAATTGCCGAGTTGG AAGGCGGCACAGCCG TERM 1009 779633 - 779618 - gf 70 -2.6 -5.03145 | gap 1, overlap 779626 GAAGTCGCCAAAAAA CAAATGC ACG GC-TTTG GCGCAATGATTTCCT metB2 778757 - 779941 + | cystathionine beta-lyase cysE2 779883 - 780464 + | serine acetyltransferase, putative TERM 1010 780479 - 780525 + F 73 -4.5 -4.93696 | gap 1, opp_overlap 780479 780496 ATAACTTACGAAAAA CACCTTGATGAAAAGAGTTGCC AGTT GGCAAAAATAT-CATCAAGGTG TTTTTCGTATTTAAC TERM 1011 780525 - 780479 - f 70 -4.5 -4.77759 | gap 1, opp_overlap 780479, overlap 780496 ATAACTTACGAAAAA CACCTTGATGAAAAGAGTTGCC AGTT GGCAAAAATAT-CATCAAGGTG TTTTTCGTATTTAAC TERM 1012 780597 - 780558 - f 100 -22.5 -4.17048 | TTGTGTCGAAAATAA TTAGGGTCCGTCTGAAA TAAGGT TTTCAGACGGACCCTAA TAAACAACATCAAAT TERM 1013 780622 - 780638 + F 80 -5.1 -5.31456 | TCAAATTAAGCTCAA TTGGCGT TAA AAGCCAA TTTTTTCTCGATTAA TERM 1014 780992 - 780938 - f 79 -5.3 -5.19879 | gap 1 GTGTAAACACAAAAA GGAATAAATC-CGTTATAGTAGAGTT GCAA AACATTACTAGAAAGAGATTTATTCC TATGACTCAGTTTAC tnp1191 780961 - 782169 + | IS1191 transposase TERM 1015 782223 - 782277 + T 79 -5.3 -5.19879 | gap 1, opp_overlap 782223 TGACAGTATCAAAAA GGAATAAATCTCTTTCTAGTAATGTT TTGC AACTCTACTATAACG-GATTTATTCC TTTTTGTGTTTACAC TERM 1016 782277 - 782223 - T 83 -7.5 -4.79223 | gap 1, opp_overlap 782223 TGACAGTATCAAAAA GGAATAAATCTCTTTCTAGTAATGTT TTGC AACTCTACTATAACG-GATTTATTCC TTTTTGTGTTTACAC TERM 1017 782314 - 782324 + T 72 -2.6 -5.33866 | TTTTACACTACCTAT TAAA TGC TTTA TTTTTTATAAATTTA TERM 1018 782347 - 782383 + T 100 -10.3 -4.95957 | opp_overlap 782347 TAAATTTATAAAAAA CAGCCCCTATAATTATA TCT TGTAAGTATAAGGGCTG TTTTTGCTTAATTTC TERM 1019 782383 - 782347 - T 100 -10.3 -5.33866 | opp_overlap 782347 TAAATTTATAAAAAA CAGCCCCTATAATTATA TCT TGTAAGTATAAGGGCTG TTTTTGCTTAATTTC stu0850 782572 - 782426 - | type I restriction-modification system specificty subunit, truncated stu0851 782968 - 782642 - | type I restriction-modification system specificty subunit, truncated stu0852 783597 - 782965 - | type I restriction-modification system methyltransferase subunit, truncated TERM 1020 783917 - 783892 - H 93 -11.1 -4.08571 | CCATAACATGACAAA GACGGCTCCCC AAAT GGAGAACCGCC TCAAATGATAAATTT stu0855 784076 - 784963 + | glucose/ribose porter (GRP) family protein TERM 1021 784990 - 784971 - f 93 -7.8 -5.59534 | opp_overlap 784971 AAGGATAATAAAAAA GCTGTCAG TAAA CTGACGGC TTTTTTTGTGAGTTA TERM 1022 784971 - 784990 + F 100 -10 -5.66684 | opp_overlap 784971 AAGGATAATAAAAAA GCTGTCAG TAAA CTGACGGC TTTTTTTGTGAGTTA TERM 1023 785206 - 785232 + F 100 -10.2 -5.07107 | TAAATTTTTGGTTTT TAGTCACAGTTG CTT CAACTGAGGCTA TTTTTTGGAAGTTTG stu0856 785579 - 785773 + | type I restriction-modification system restriction subunit, truncated stu0857 785953 - 786285 + | type I restriction-modification system methyltransferase subunit, truncated TERM 1024 786429 - 786448 + T 95 -6.5 -5.89827 | opp_overlap 786428 786429 AGTCATCAAAAAAGC CTTTCCA TAAAAT TGGAAAG TTTTTTTTCGTAGTT stu0859 787238 - 786573 - | hypothetical protein adcA 787447 - 788991 + | zinc (Zn2+) ABC uptake transporter substrate binding protein TERM 1025 789003 - 789016 + F 100 -6.7 -6.32976 | opp_overlap 789002 789003 CTAAGAGTATTAAAT CACTC ATTT GAGTG TTTTTTTATTTTTTT stu0861 789209 - 789607 + | hypothetical protein TERM 1026 789621 - 789598 - T 84 -5.2 -5.4251 | opp_overlap 789600, overlap 789599 789600 CTCAGATATAAAAAA TTGCCGTTAG ATTG CTAACGGCTT TTGATATGTCAAGAA TERM 1027 789620 - 789599 - T 79 -8.7 -3.84422 | opp_overlap 789600, overlap 789598 789600 TCAGATATAAAAAAT TGCCGTTAG ATTG CTAACGGCT TTTGATATGTCAAGA TERM 1028 789600 - 789619 + T 100 -12.2 -4.39166 | opp_overlap 789599 789598 789600 CAGATATAAAAAATT GCCGTTAG ATTG CTAACGGC TTTTGATATGTCAAG TERM 1029 789619 - 789600 - T 84 -12.2 -2.89568 | opp_overlap 789600, overlap 789599 789598 CAGATATAAAAAATT GCCGTTAG ATTG CTAACGGC TTTTGATATGTCAAG TERM 1030 790155 - 790127 - T 77 -10.3 -2.54988 | opp_overlap 790130, overlap 790126 790124 790134 ATTAAAAGCTAACAC CTAGAGAGGACGA ACT TCGTCCTCTCTTT CTTTATGTTCAATGC TERM 1031 790130 - 790152 + T 100 -16.4 -4.68511 | opp_overlap 790127 790126 790124 790134 AAAAGCTAACACCTA GAGAGGACGA ACT TCGTCCTCTC TTTCTTTATGTTCAA TERM 1032 790148 - 790134 - T 76 -10 -2.9518 | opp_overlap 790130, overlap 790127 790126 790124 GCTAACACCTAGAGA GGACGA ACT TCGTCC TCTCTTTCTTTATGT stu0863 790419 - 790120 - | hypothetical protein stu0864 790838 - 790359 - | hypothetical protein stu0865 791118 - 790813 - | hypothetical protein stu0866 791221 - 791093 - | hypothetical protein TERM 1033 791493 - 791444 - R 100 -16.7 -4.72846 | opp_overlap 791416 791456 GTATATACTCAAAAA GGCTCCATAATTTCCATGGTGGA TTTA CCCACTACAGAAATTATAGAGCC AAAAAAACTCACAAA TERM 1034 791496 - 791530 + r 93 -11.7 -3.93868 | opp_overlap 791501, overlap 791501 AAATTATAGAGCCAA AAAAACTCACAAACT AAGTA AGTTTGTGAGTTTTC TATTTATTTTACCAA TERM 1035 791525 - 791501 - R 100 -11.6 -5.51402 | opp_overlap 791496 791501 ATAGAGCCAAAAAAA CTCACAAACT AAGTA AGTTTGTGAG TTTTCTATTTATTTT TERM 1036 791501 - 791525 + r 100 -11.6 -4.95487 | opp_overlap 791501, overlap 791496 ATAGAGCCAAAAAAA CTCACAAACT AAGTA AGTTTGTGAG TTTTCTATTTATTTT stu0868 792546 - 791539 - | hypothetical protein TERM 1037 792346 - 792357 + g 70 -3 -5.1287 | overlap 792343 CAGAAGAACAACTGC GTAT TGCA ATAC TTTTTTCGATGTGAA mur2 792954 - 793433 + | peptidoglycan hydrolase TERM 1038 793495 - 793451 - g 76 -10.9 -2.71765 | opp_overlap 793453, overlap 793450 793446 AGAGCCGAAATGAAC TGCACCCCAAAAGTTAGAC AGAAAAA ATCTAACTTTTGGGGTGTT TTTATTATGAAATTG TERM 1039 793453 - 793493 + G 100 -17.2 -5.19328 | opp_overlap 793451 793450 793446 AGCCGAAATGAACTG CACCCCAAAAGTTAGA CAGAAAAAA TCTAACTTTTGGGGTG TTTTTATTATGAAAT stu0870 793445 - 793663 + | hypothetical protein stu0871 793667 - 794221 + | hypothetical protein TERM 1040 794313 - 794281 - T 100 -10 -4.69549 | opp_overlap 794281 AAGGTAAAACTAAAA GGACTCAGTCCTGT GCAAT ACAGAACTAAATCC TTTGGATAAATTATT cmhR 795327 - 794419 - | putative metCcysK operon transcriptional activator TERM 1041 795792 - 795808 + G 73 -2.1 -5.18643 | overlap 795789 AATGCTCACCCACAC CGCTCAG AAA CAGAACG TTTTGTTTTGGTTCA glmS 795534 - 797342 + | D-fructose-6-phosphate amidotransferase TERM 1042 797349 - 797377 + F 71 -3.1 -5.11254 | opp_overlap 797355, overlap 797352 GTTGAATAAAAATAC TAACATCTCTTAC ATT GTAAGGGGGGGTA TTTGTTTTTCTTGTT phnA 797460 - 797789 + | PhnA-like protein stu0875 797983 - 798624 + | polar amino acid ABC uptake transporter membrane-spanning protein stu0876 798633 - 799262 + | polar amino acid ABC uptake transporter ATP-binding protein TERM 1043 799426 - 799411 - g 83 -4.8 -5.34857 | CCAAAGAAAAGAAAA TCAAAA TTGG TTTTGA TGCAACCTTTGTTCC TERM 1044 800062 - 800051 - g 74 -4.4 -4.84017 | AACTCTTTATAAAAA TGGA GAAT TCCA AAAGATTTCTAACAA stu0877 799275 - 800126 + | polar amino acid ABC uptake transporter substrate binding protein TERM 1045 800159 - 800132 - f 87 -13 -2.89741 | opp_overlap 800132, overlap 800129 800127 800135 800138 GAAAAGATAAGACTA TAACAACATTCT AGAA AGAATGTTGTTA TTTTTTGTGAAAAAC TERM 1046 800132 - 800159 + F 100 -13 -5.24129 | opp_overlap 800132 800129 800127 800135 800138 GAAAAGATAAGACTA TAACAACATTCT AGAA AGAATGTTGTTA TTTTTTGTGAAAAAC TERM 1047 800156 - 800135 - f 86 -10.3 -3.56445 | opp_overlap 800132, overlap 800132 800129 800127 800138 AAGATAAGACTATAA CAACATTCT AGAA AGAATGTTG TTATTTTTTGTGAAA TERM 1048 800382 - 800403 + F 74 -9.5 -3.1005 | opp_overlap 800382, overlap 800374 800370 GAGTAGAGCTGAAAA CGCTAATGG TTCA CTATTAGCG TCTTCCCCTATATTT TERM 1049 800403 - 800382 - f 75 -7.3 -4.17657 | opp_overlap 800374 800370 800382 GAGTAGAGCTGAAAA CGCTAATGG TTCA CTATTAGCG TCTTCCCCTATATTT stu0879 800589 - 801410 + | SOS responce UmuC protein, truncated stu0880 802182 - 802535 + | alcohol dehydrogenase I, truncated stu0881 802549 - 802680 + | alcohol dehydrogenase I, truncated stu0882 802726 - 803214 + | alcohol dehydrogenase I, truncated TERM 1050 803376 - 803414 + T 100 -10.5 -5.19819 | gap 1, opp_overlap 803383, overlap 803378 803383 CATATAGATATAAAA CA-AAAAAGCGTTGAACG ATTG CGTTCAGCGCTTTTGATG TTTTTGGTTTTATTT TERM 1051 803378 - 803411 + T 88 -13.3 -3.08208 | opp_overlap 803383, overlap 803376 803383 TATAGATATAAAACA AAAAAGCGTTGAACG ATTG CGTTCAGCGCTTTTG ATGTTTTTGGTTTTA TERM 1052 803406 - 803383 - T 100 -11 -5.8901 | opp_overlap 803383 803378 803376 ATATAAAACAAAAAA GCGTTGAACG ATTG CGTTCAGCGC TTTTGATGTTTTTGG TERM 1053 803383 - 803406 + T 100 -13.2 -4.60746 | opp_overlap 803383, overlap 803378 803376 ATATAAAACAAAAAA GCGTTGAACG ATTG CGTTCAGCGC TTTTGATGTTTTTGG sthIR 806624 - 803838 - | DNA endonuclease, type III restriction and modification system TERM 1054 805234 - 805266 + g 76 -2.1 -5.38054 | opp_overlap 805244, overlap 805235 TAATACCTTGCACCA CGCC-CAATGAGTTG CGCTT CAAC-CATTGTGGCA TTTTTGTTTGTCGCA TERM 1055 806537 - 806549 + g 72 -3.4 -5.03945 | opp_overlap 806527 CATAACTTTGGTGCT GACT GAACA AGTC TTTTTCTGCTTGTTC sthIM 808551 - 806626 - | type III restriction-modification system methylation subunit TERM 1056 808658 - 808630 - R 100 -8.9 -5.83822 | opp_overlap 808630 GAGAGCCAAAAAAAA CCTCCCACCGA CAACCAT TCAGTGAGAGG ATTTTTGGCGACAGT guaA 810357 - 808774 - | bifunctional GMP synthase/glutamine amidotransferase protein stu0887 810505 - 811203 + | GntR family transcriptional regulator stu0888 811270 - 811602 + | hypothetical protein TERM 1057 811713 - 811701 - g 77 -6.3 -4.57516 | AGACGTAAAGGAAAA CTTTC AGA GAAAG AAGTTCAAGAAGTCA TERM 1058 811935 - 811957 + G 81 -11.4 -3.02144 | opp_overlap 811934 811933, overlap 811939 AAATCTCCAAAGATT CCAACTATCA TTA TGATGGTTGG TCTTCAAGGGGCTGG ffh 811635 - 813197 + | signal recognition particle TERM 1059 813223 - 813205 - f 73 -8.9 -3.22335 | opp_overlap 813205, overlap 813203 813202 GTAAATAAGAAAGGA CTAGAGC TTATG GCTCTAG TTTTTTTATGGCATA TERM 1060 813205 - 813223 + F 100 -9.6 -5.626 | opp_overlap 813205 813203 813202 GTAAATAAGAAAGGA CTAGAGCT TAT GGCTCTAG TTTTTTTATGGCATA stu0890 813239 - 813826 + | hypothetical protein stu0891 813850 - 814365 + | biotin repressor family transcriptional regulator TERM 1061 814386 - 814413 + F 100 -10 -5.52986 | opp_overlap 814386 814381 814389 AAGAGAAATATAAAA GTAGTTGATTTC ACTT GAAGTCAACTGC TTTTTTTGATACACT TERM 1062 814413 - 814386 - f 77 -5.6 -4.88684 | opp_overlap 814386, overlap 814381 814389 AAGAGAAATATAAAA GTAGTTGATTTC ACTT GAAGTCAACTGC TTTTTTTGATACACT stu0892 814460 - 815149 + | transcriptional regulator TERM 1063 815176 - 815164 - f 73 -7.7 -3.84808 | GCCAAGTGATAACAA TTGGG CAT CCCAA ACTAAATCTGTTATA TERM 1064 815208 - 815221 + F 87 -6.7 -5.4477 | opp_overlap 815208 TATAACTAAAGCAAA GCCAA TGAT TTGGC TTTTTTTAAAGATTT TERM 1065 815221 - 815208 - f 71 -6.7 -4.16205 | opp_overlap 815208 TATAACTAAAGCAAA GCCAA TGAT TTGGC TTTTTTTAAAGATTT rbgA 815277 - 816131 + | ribosomal biogenesis GTPase rnhB 816103 - 816885 + | ribonuclease HII stu0895 816896 - 817816 + | transcriptional regulator TERM 1066 817818 - 817848 + F 100 -12.1 -4.45068 | overlap 817826 AAAATGCCTTATAGT CAAAAAAAGTTCC ATAAA GGGACTTTTTTTG TTTCTTCTTGCGAAT TERM 1067 817826 - 817840 + F 93 -3.5 -6.08342 | overlap 817818 TTATAGTCAAAAAAA GTTCC ATAAA GGGAC TTTTTTTGTTTCTTC dprA 817884 - 818723 + | Smf family DNA processing protein topA 818891 - 821035 + | DNA topoisomerase I TERM 1068 821107 - 821141 + T 100 -17.2 -3.68302 | opp_overlap 821100 TAAAATATTAGGCGA CGGCCTTGTTCCTCAT TTC AAGAGGGGCAAGGCCG TTATTGCGCTCTTGA tnpSth1 821968 - 821099 - | IS3 familytransposase orf2 tnpSth1 822723 - 821983 - | IS3 familytransposase orf1 TERM 1069 822677 - 822734 + g 85 -12.3 -3.10935 | opp_overlap 822677, overlap 822689 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCATTTTGACT TERM 1070 822734 - 822677 - G 79 -10.1 -3.52874 | opp_overlap 822677 822689 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCATTTTGACT stu0900 822839 - 823663 + | hypothetical protein rr04 823699 - 824358 + | response regulator (homolog to spaR Bsu & DvnR Cdi) hk04 824331 - 825743 + | sensor histidine kinase (homolog to spaK Bsu) TERM 1071 825737 - 825758 + F 80 -5.1 -5.23316 | opp_overlap 825735 825732 825737 TTTAAATACAGATGA CTCCTAGTC GCCA GATGAGGAG TTTTTTGCTATACTA gid 825844 - 827187 + | tRNA (uracil-5-)-methyltransferase Gid TERM 1072 827221 - 827202 - T 100 -10 -5.09762 | opp_overlap 827202 827197 ATGCTAACATAAAAA GCCCTCAC AAGA GTGAAGGC TTTTCGTTTTAGAGA TERM 1073 827202 - 827221 + T 83 -7.8 -4.67038 | opp_overlap 827202, overlap 827197 ATGCTAACATAAAAA GCCCTCAC AAGA GTGAAGGC TTTTCGTTTTAGAGA stu0904 827414 - 827190 - | hypothetical protein stu0905 828242 - 827451 - | hypothetical protein ndk 828553 - 828981 + | nucleoside diphosphate kinase stu0907 828971 - 829276 + | hypothetical protein TERM 1074 829283 - 829305 + F 76 -7.8 -4.05788 | opp_overlap 829279, overlap 829279 829286 GAAAAATAATACACA TAAGGTCACT AGT GGTGATCTTA TTTGCTTTCAAAAAG TERM 1075 829756 - 829738 - g 77 -9.6 -3.61398 | TGTTGTTGTTAATAA TGCTGGTG TGG CACCAACA AAACCCCTTGACACT stu0909 829457 - 829828 + | acetoin reductase, truncated stu0910 830104 - 830250 + | acetoin reductase, truncated TERM 1076 830261 - 830277 + F 93 -8 -5.65513 | opp_overlap 830260 830263 ATTAAGGTTAAAAGG GAGAGC GAATG GCTCTC TTTTTTTGCTTGATA TERM 1077 830552 - 830569 + F 93 -7.7 -5.39721 | opp_overlap 830552 830554 AAAGCAGATATTAGA GATAGGC AAAT GCCTGTC TTTTTTGTATAATAG lepA 830638 - 832470 + | GTP-binding protein LepA TERM 1078 833142 - 833158 + GT 71 -5.1 -4.59853 | opp_overlap 833142 AAGTTTGTCTAATTA TCTCCAG TTA CTAGAGA TTTTTGAAGGCTTGC stu0913 833568 - 833152 - | hypothetical protein stu0912 832876 - 833217 + | hypothetical protein TERM 1079 833219 - 833238 + gF 88 -7.2 -4.98911 | opp_overlap 833219 833222 TAAAAAATACATAAA CATCTGAT TGTA ATCAGGTG TTTCTTTTTGTGCTG TERM 1080 833404 - 833393 - Gf 76 -4.4 -5.03747 | overlap 833382 AAAGGGTTCAAAAAA CCAA CTGC TTGG AACCGCTTTAAATAC stu0914 833656 - 833778 + | hypothetical protein TERM 1081 833840 - 833813 - f 83 -11.4 -2.89267 | CGCAAGGATACGAGA GGTTTCTGCTAT CGGT ATAGCAGAAGCC ATGGCTCTAAAGTTA stu0915 833841 - 834086 + | hypothetical protein TERM 1082 834093 - 834111 + F 78 -7.5 -4.09685 | opp_overlap 834093, overlap 834100 834100 AAGCGATGACACAAA CTGGATT CTCGC AATCCAG TTTTAAGGGCTGAAA TERM 1083 834111 - 834093 - f 78 -7.5 -4.09822 | opp_overlap 834093 834100 834100 AAGCGATGACACAAA CTGGATT CTCGC AATCCAG TTTTAAGGGCTGAAA TERM 1084 834100 - 834157 + F 75 -8 -3.8594 | gap 1, opp_overlap 834093 834111, overlap 834093 834100 GACACAAACTGGATT CT-CGCAATCCAGTTTTAAGGGCTGAA AAAGA TTCAACCTTTAAAACTGGACTGTAAAG TTTAGTATGGATATT TERM 1085 834145 - 834111 - f 72 -9.5 -2.52676 | opp_overlap 834100 834100 GATTCTCGCAATCCA GTTTTAAGGGCTGAA AAAGA TTCAACCTTTAAAAC TGGACTGTAAAGTTT stu0916 834195 - 834530 + | transcriptional regulator TERM 1086 834598 - 834551 - f 100 -10.2 -4.72846 | gap 1, opp_overlap 834551 834552, overlap 834552 GTATACACTCAAAAA GCTCTATAATCTCTATAGT-GGT TTT ACCTACTACAGAAATCATAGAGT CTTTTTTATATTATA TERM 1087 834551 - 834599 + F 77 -3.4 -5.5208 | gap 2, opp_overlap 834551 834552, overlap 834552 GTATACACTCAAAAA G-CTCTATAATCTCTATAGT-GGT TTT ACCTACTACAGAAATCATAGAGTC TTTTTTATATTATAC TERM 1088 834552 - 834597 + F 78 -7.1 -4.38219 | gap 1, opp_overlap 834552 834551, overlap 834551 TATACACTCAAAAAG CTCTATAATCTCTATAGT-GGT TTT ACCTACTACAGAAATCATAGAG TCTTTTTTATATTAT TERM 1089 834597 - 834552 - f 95 -13.7 -3.42985 | gap 1, opp_overlap 834551 834552, overlap 834551 TATACACTCAAAAAG CTCTATAATCTCTATAGT-GGT TTT ACCTACTACAGAAATCATAGAG TCTTTTTTATATTAT TERM 1090 834641 - 834693 + F 100 -18.1 -4.93454 | opp_overlap 834638 834647 834649 834657, overlap 834645 834647 AACAACATCATACCT TAACTACACCACAAAAGTTAGACAT CGA AAGTCTAACTTTTGTGGTGTCTTTA TTTTCTATTTGTTTA TERM 1091 834645 - 834689 + F 100 -18.9 -4.91778 | opp_overlap 834638 834647 834649 834657, overlap 834641 834647 ACATCATACCTTAAC TACACCACAAAAGTTAGACAT CGA AAGTCTAACTTTTGTGGTGTC TTTATTTTCTATTTG TERM 1092 834647 - 834687 + F 100 -21.5 -4.03704 | opp_overlap 834647 834638 834649 834657, overlap 834645 834641 ATCATACCTTAACTA CACCACAAAAGTTAGACAT CGA AAGTCTAACTTTTGTGGTG TCTTTATTTTCTATT TERM 1093 834687 - 834647 - f 100 -21.5 -2.74741 | opp_overlap 834645 834641 834647, overlap 834638 834649 834657 ATCATACCTTAACTA CACCACAAAAGTTAGACAT CGA AAGTCTAACTTTTGTGGTG TCTTTATTTTCTATT TERM 1094 834685 - 834649 - f 100 -18.3 -2.9175 | opp_overlap 834647 834645 834641, overlap 834647 834638 834657 CATACCTTAACTACA CCACAAAAGTTAGACAT CGA AAGTCTAACTTTTGTGG TGTCTTTATTTTCTA TERM 1095 834677 - 834657 - f 80 -6.9 -4.5265 | opp_overlap 834647 834645 834641, overlap 834649 834647 834638 AACTACACCACAAAA GTTAGACAT CGA AAGTCTAAC TTTTGTGGTGTCTTT stu0917 834855 - 835721 + | MutR family transcriptional regulator TERM 1096 836211 - 836222 + G 75 -5.8 -4.76644 | opp_overlap 836205 836211 TACGATATATTAAAA CTGG GGTG CCAG TTTTTAGTCCGTCTT TERM 1097 836222 - 836211 - g 70 -5.8 -4.40237 | opp_overlap 836211, overlap 836205 TACGATATATTAAAA CTGG GGTG CCAG TTTTTAGTCCGTCTT stu0918 835781 - 836581 + | hypothetical protein stu0919 836626 - 836790 + | hypothetical protein TERM 1098 836805 - 836827 + F 78 -7.1 -4.41882 | ATAGAACTGATTGTA GGATTAGAG TCTAT TTCTAATCC TTTGGTTTTTATATT stu0920 836992 - 838089 + | metallo cofactor biosynthesis protein speB 838086 - 838829 + | agmatinase TERM 1099 839333 - 839352 + G 73 -2.2 -5.26119 | gap 1, overlap 839335 TTATGCTCTTCTTTT GA-TAGTGG GAG CTACTAGTC TTTTATTTTTACCAA stu0922 838860 - 840008 + | hypothetical protein TERM 1100 840058 - 840083 + F 93 -8.4 -5.52986 | opp_overlap 840058 840060 TTAATTTATAAAGTA GACAAACGCT ATTTTG AGTGTTTGTC TTTTTTTAGTCACCT als 840256 - 841938 + | acetolactate synthase aldB 841954 - 842673 + | alpha-acetolactate decarboxylase TERM 1101 842737 - 842755 + T 90 -8.1 -4.91459 | opp_overlap 842739 AAGCTAATATCTAGA GAGGGCC GGATA GGTCCTC TTTTTATGAATGTTC stu0925 843835 - 842852 - | truncated IS1193 transposase stu0926 843983 - 843822 - | truncated IS1193 transposase TERM 1102 844103 - 844056 - R 100 -12.3 -4.70659 | opp_overlap 844034 844032, overlap 844095 GTGTACACTCAAAAA GCTCTATAATCCCTACAGTAG TTTTAC CCACTACAGAAATTATAGAGC CAAGATACTCCCCTA TERM 1103 844148 - 844095 - R 89 -9.2 -4.0942 | gap 1, opp_overlap 844104 844107, overlap 844056 844107 TACCCACTACAGAAA TTATAGAGCCAAGATACTCCCCTAT TCGAC ATAGGGGAGTATCTT-GTTTTAAAA CGACGAAGTGGTCCT TERM 1104 844104 - 844140 + r 100 -21.2 -4.07568 | opp_overlap 844095 844107, overlap 844107 CAGAAATTATAGAGC CAAGATACTCCCCTAT TCGAC ATAGGGGAGTATCTTG TTTTAAAACGACGAA TERM 1105 844107 - 844137 + r 100 -17.1 -4.17048 | opp_overlap 844095 844107, overlap 844104 AAATTATAGAGCCAA GATACTCCCCTAT TCGAC ATAGGGGAGTATC TTGTTTTAAAACGAC TERM 1106 844137 - 844107 - R 100 -17.1 -3.18086 | opp_overlap 844107 844104, overlap 844095 AAATTATAGAGCCAA GATACTCCCCTAT TCGAC ATAGGGGAGTATC TTGTTTTAAAACGAC stu0927 844394 - 844200 - | ABC transporter membrane-spanning protein, truncated stu0928 844944 - 844372 - | ABC transporter membrane-spanning protein, truncated stu0929 845166 - 845918 + | short chain dehydrogenase/reductase family oxidoreductase TERM 1107 845968 - 845940 - T 86 -4.7 -5.66338 | opp_overlap 845940 845942, overlap 845942 AAATATAAGAAAAAA GCTCAAGTTTT CATTAAT AAAACTTGATC TTTTCTTATACAAGA TERM 1108 845940 - 845968 + T 72 -4.7 -4.77165 | opp_overlap 845940 845942, overlap 845942 AAATATAAGAAAAAA GCTCAAGTTTT CATTAAT AAAACTTGATC TTTTCTTATACAAGA stu0930 846307 - 846095 - | hypothetical protein stu0931 846885 - 846346 - | TetR family transcriptional regulator TERM 1109 847160 - 847171 + G 71 -7.2 -3.86015 | GATGCTCTAGCCATT GGCC TCTC GGCC TTTCTAGAAACAATC TERM 1110 847470 - 847490 + G 70 -8.3 -3.43288 | ATACCTTAGGTTGGT TGGCTGTCA TCC TGATGGCCA TTGTCCTCCGATTTA stu0932 847019 - 847915 + | cation diffusion facilitor (CDF) family protein TERM 1111 847930 - 847952 + F 75 -7.1 -4.25256 | opp_overlap 847930, overlap 847927 AGGTTTGTTTTTAAA CTCTTAGAG TCTAC CTTTAAGAG TTATTTTGATACCAA stu0934 848027 - 848338 + | ferrochelatase, truncated stu0935 848339 - 849121 + | ferrochelatase, truncated adhB 849218 - 850255 + | alcohol dehydrogenase, zinc-containing stu0937 850669 - 850848 + | hypothetical protein stu0938 850927 - 851376 + | hypothetical protein TERM 1112 851432 - 851385 - f 87 -11.1 -3.36131 | gap 1, opp_overlap 851398, overlap 851398 AAAATGAGTTGATAA GAATATAAAAAAATCTAGTAGA GGCTG TCTACTAGATTTTTTTA-ATAC AATGATTGGGTTGGC TERM 1113 851420 - 851398 - f 100 -9.3 -5.86465 | opp_overlap 851398, overlap 851385 AAGAATATAAAAAAA TCTAGTAGA GGCTG TCTACTAGA TTTTTTTAATACAAT TERM 1114 851398 - 851420 + F 100 -9.3 -5.52986 | opp_overlap 851385 851398 AAGAATATAAAAAAA TCTAGTAGA GGCTG TCTACTAGA TTTTTTTAATACAAT TERM 1115 851525 - 851536 + F 71 -3 -5.02323 | opp_overlap 851525 TAAAGATAAGATAAT GTAA TCGT TTAC TTTTGTTTCTCATAA stu0940 851838 - 852290 + | hypothetical protein TERM 1116 852484 - 852514 + F 73 -4 -5.17054 | opp_overlap 852484 852481, overlap 852497 ATAGAACACAAATAA GACATGTTTCTG ACTAAAA CAGATTCATGTC TTTTTTAGGTGTTAT stu0941 852636 - 853400 + | phosphorylase Pnp/Udp family protein TERM 1117 853444 - 853421 - T 86 -6 -5.48063 | opp_overlap 853421 853416 ATTCAATAGAAAAAA GAGCATGACT AGAG AATCTTGCTC TTTTCGTTTTCCAAG stu0942 854109 - 853462 - | phosphatase, putative stu0943 854385 - 854516 + | ferrichrome ABC transporter substrate-binding protein, truncated stu0944 854559 - 854834 + | hypothetical protein stu0946 855378 - 855112 - | hypothetical protein stu0947 855932 - 855375 - | hypothetical protein stu0948 856222 - 855974 - | hypothetical protein TERM 1118 856327 - 856300 - H 71 -6.4 -4.08958 | opp_overlap 856306, overlap 856306 ATCGTGAAACAATAA TAAAAAGTCACC CTAG GATGACTTTTTC ATAGACTTTAGATAG TERM 1119 856321 - 856306 - H 84 -5.4 -5.40014 | opp_overlap 856306, overlap 856300 AAACAATAATAAAAA GTCACC CTAG GATGAC TTTTTCATAGACTTT stu0949 856483 - 856692 + | hypothetical protein TERM 1120 856982 - 856998 + T 83 -5.1 -5.4756 | opp_overlap 856982 ATATAATGAAAAAAA GGAACCT ACT AAGTTCC TTTTTTATTACAGTT TERM 1121 856998 - 856982 - T 93 -7.3 -5.69379 | opp_overlap 856982 ATATAATGAAAAAAA GGAACCT ACT AAGTTCC TTTTTTATTACAGTT fbp 858726 - 857068 - | fibronectin-binding protein-like protein A TERM 1122 857832 - 857844 + g 80 -6.3 -4.68451 | overlap 857841 CAGCAAGCTCTTTTT CTTGT TTA ACAAG TTTCTTCTTGTTTTT TERM 1123 857841 - 857854 + g 76 -2.4 -5.47399 | overlap 857832 CTTTTTCTTGTTTAA CAAG TTTCTT CTTG TTTTTTTCCAGTTCA stu0951 859044 - 859601 + | hypothetical protein thiJ 859868 - 860416 + | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme TERM 1124 860632 - 860649 + F 84 -5.5 -5.52986 | TGATTTTTTGTGCGA CCTTGCC ATAT GGTGAGG TTTTTTTGATGACAT pyrK 860658 - 861461 + | dihydroorotate dehydrogenase electron transfer subunit pyrDb 861480 - 862427 + | dihydroorotate dehydrogenase 1B TERM 1125 862483 - 862458 - f 76 -2.5 -5.50774 | opp_overlap 862459 862460, overlap 862459 862460 TACAATAAATAAAAA TCGAAGTCCTA TCGT TAGGGCTTCAT TTTTTAGATAAGACA TERM 1126 862459 - 862482 + F 83 -6 -5.08824 | opp_overlap 862458 862459 862460, overlap 862460 ACAATAAATAAAAAT CGAAGTCCTA TCGT TAGGGCTTCA TTTTTTAGATAAGAC TERM 1127 862460 - 862481 + F 80 -9.5 -3.64812 | opp_overlap 862460 862459 862458, overlap 862459 CAATAAATAAAAATC GAAGTCCTA TCGT TAGGGCTTC ATTTTTTAGATAAGA TERM 1128 862642 - 862624 - g 76 -7.6 -4.21438 | TATCTGAACAAAGAA TTATCATT AAA AATGATAA TAAAGAGATTGTCAA stu0956 862566 - 863189 + | hypothetical protein stu0957 863174 - 863569 + | hypothetical protein stu0958 863569 - 863898 + | hypothetical protein TERM 1129 864390 - 864425 + F 95 -8.5 -5.14563 | gap 1, opp_overlap 864379 864377 864399 AGCACATTAAGGGCG CCCCAATGAGTTGAAA AGTAC TTTCAGCTT-TTGGGG TTTTTTCATACAAAG stu0959 864454 - 865185 + | hypothetical protein TERM 1130 865273 - 865256 - g 100 -9.1 -5.68023 | opp_overlap 865255 GGAGAACGAAAAAAA CACGCCT TGGT AGGCGCG GATTGGTTTGATGAG TERM 1131 867413 - 867392 - g 71 -5.1 -4.63007 | opp_overlap 867392 GATAAGGATAGAAAA GAAGCAGAG TTAG CCTTGCTTC TCTATATCTATGAGA stu0960 865166 - 867442 + | hypothetical protein TERM 1132 867583 - 867559 - g 73 -10.1 -2.87146 | opp_overlap 867562, overlap 867558 867562 CTTTCTTACAACAAG TAAGCTCAGAA ACT TGCTGAGCTTA ACTAGTACACTTTTT stu0961 867446 - 867826 + | hypothetical protein stu0962 867826 - 868488 + | hypothetical protein stu0963 868490 - 869389 + | hypothetical protein stu0964 869392 - 870465 + | hypothetical protein stu0965 870620 - 870736 + | hypothetical protein stu0966 870767 - 871795 + | hypothetical protein TERM 1133 871922 - 871936 + F 73 -7.8 -3.73042 | opp_overlap 871922, overlap 871925 TACGGCATCACTAAA GGGTAG GGA CTGCCC TATTTTCGTGCAACC TERM 1134 871925 - 871938 + F 71 -6.7 -4.25848 | opp_overlap 871922, overlap 871922 GGCATCACTAAAGGG TAGGG ACTG CCCTA TTTTCGTGCAACCTT TERM 1135 871950 - 871969 + F 89 -7.8 -5.36441 | CCTATTTTCGTGCAA CCTTCGCT GACT GGCGGAGG TTTTTTGTGTGAAAG TERM 1136 872439 - 872428 - g 70 -5.8 -4.3898 | ATTATGCTCAGAAAA CTGC TGAA GCAG GTCTCGATGGTGTTG pyrF 871995 - 872690 + | orotidine 5'-phosphate decarboxylase TERM 1137 873274 - 873264 - g 79 -5.4 -4.90296 | overlap 873254 AAAAGCTGAGAAAAA CTTC GCA GAAG CTGGTGTGAAATTGG pyrE 872779 - 873408 + | orotate phosphoribosyltransferase TERM 1138 873399 - 873387 - f 88 -7.7 -4.96468 | GAAATTCAAAGAAAA CCAAG AAA CTTGG CAAGACTAATTATTA TERM 1139 873424 - 873446 + F 93 -8.4 -5.59357 | TTATTATGATTTAAG GCGGAACGTT TTA GGCGTTTCGC TTTTTTTAGTATAAT stu0969 873649 - 874056 + | amidase, truncated TERM 1140 874109 - 874054 - T 100 -17.4 -3.62096 | gap 1, opp_overlap 874059 874072, overlap 874057 874058 874072 GCCGACGATGTGAAA TAATTAAGCATAAAAAAAGCGCTCATA ATA TATGAGCGCTTTTTTTATGCA-ATTTA TTCAACACCTTGCAT TERM 1141 874105 - 874057 - T 100 -16.6 -3.94634 | gap 2, opp_overlap 874059 874072, overlap 874054 874058 874072 GACGATGTGAAATAA TTAAGCATAAAAAAAGCGCTCATA ATA TATGAGCGCTTTTTTTATGC--AA TTTATTCAACACCTT TERM 1142 874105 - 874058 - T 100 -18.2 -2.96298 | gap 1, opp_overlap 874059 874072, overlap 874057 874054 874072 ACGATGTGAAATAAT TAAGCATAAAAAAAGCGCTCATA ATA TATGAGCGCTTTTTTTATGCA-A TTTATTCAACACCTT TERM 1143 874059 - 874105 + T 100 -19.8 -4.15788 | opp_overlap 874057 874058 874054 874072, overlap 874072 CGATGTGAAATAATT AAGCATAAAAAAAGCGCTCATA ATA TATGAGCGCTTTTTTTATGCAA TTTATTCAACACCTT TERM 1144 874072 - 874092 + T 100 -14.1 -5.63504 | opp_overlap 874072 874057 874058 874054, overlap 874059 TTAAGCATAAAAAAA GCGCTCATA ATA TATGAGCGC TTTTTTTATGCAATT TERM 1145 874092 - 874072 - T 100 -14.1 -5.71983 | opp_overlap 874059 874072, overlap 874057 874058 874054 TTAAGCATAAAAAAA GCGCTCATA ATA TATGAGCGC TTTTTTTATGCAATT dtpT 875558 - 874107 - | di- or tripeptide:H+ symporter TERM 1146 875865 - 875842 - H 75 -9.6 -2.74012 | opp_overlap 875843, overlap 875828 875847 CTATTAGGCTAAGTA GCCAAGGCTA ATAA TAGCCTTGGT TTAGCTGACAAAACA TERM 1147 875843 - 875864 + H 95 -13.1 -3.64703 | opp_overlap 875828 875842 875847 TATTAGGCTAAGTAG CCAAGGCTA ATAA TAGCCTTGG TTTAGCTGACAAAAC TERM 1148 876255 - 876243 - g 70 -3.4 -4.96028 | CGGTAAAAAAAATAA TCCT AACGA AGGA AATGAAAGAGAAAAT TERM 1149 876854 - 876837 - g 74 -4.9 -4.81082 | gap 1, opp_overlap 876837 AAGGAACCAAGAAAA CGAC-TCT GAA AGAAGTCG CTTTTATCGAAAATT tnp1239 875897 - 876937 + | IS1239 transposase stu0973 877223 - 877825 + | amidase, truncated stu0974 877914 - 878348 + | amino acid ABC uptake transporter substrate binding protein, truncated stu0975 878368 - 878727 + | amino acid ABC uptake transporter substrate binding protein, truncated stu0976 878866 - 879279 + | amino acid ABC uptake transporter membrane-spanning protein, truncated stu0977 879249 - 879437 + | amino acid ABC uptake transporter membrane-spanning protein, truncated TERM 1150 879597 - 879586 - g 72 -4.4 -4.70511 | TGAAAAAGAAAACAA TCGT TGCA ACGA CCCTATCGACCCTAC stu0978 879567 - 879800 + | hypothetical protein stu0979 879874 - 881340 + | 5'-nucleotidase, putative stu0980 881351 - 881638 + | hypothetical protein TERM 1151 881831 - 881857 + T 100 -11.1 -4.96427 | opp_overlap 881831 881834 TCTCTGCATAAATAA TAAGAGTTAAC CAATA GTTAACTCTTA TTTGTTTTCTTGTTG TERM 1152 881857 - 881831 - T 95 -11.8 -4.06419 | opp_overlap 881831, overlap 881834 TCTCTGCATAAATAA TAAGAGTTAACC AAT AGTTAACTCTTA TTTGTTTTCTTGTTG TERM 1153 881854 - 881834 - T 89 -9.1 -4.15703 | opp_overlap 881831, overlap 881831 CTGCATAAATAATAA GAGTTAACC AAT AGTTAACTC TTATTTGTTTTCTTG stu0981 882456 - 881848 - | AraC family transcriptional regulator stu0982 882815 - 882681 - | AraC family transcriptional regulator TERM 1154 882913 - 882888 - R 100 -10.7 -4.29845 | opp_overlap 882873 882894, overlap 882894 TAATTTAATTTAAAA TAAAAAGATAG CAAT CTATCTTTTTA CATAAATTAAGTTAT TERM 1155 882907 - 882894 - R 84 -5.3 -5.49568 | opp_overlap 882873 882894, overlap 882888 AATTTAAAATAAAAA GATAG CAAT CTATC TTTTTACATAAATTA TERM 1156 882894 - 882907 + r 74 -5.3 -4.68424 | opp_overlap 882894 882888, overlap 882873 AATTTAAAATAAAAA GATAG CAAT CTATC TTTTTACATAAATTA trmE 884301 - 882931 - | tRNA modification GTPase TrmE TERM 1157 884423 - 884412 - R 86 -5.8 -5.52096 | opp_overlap 884407 884412 AAAGGCAAGAAAAAA GAGC CTGA GCTC TTTTCCTTATTTATG TERM 1158 884412 - 884423 + r 74 -5.8 -4.64613 | opp_overlap 884412, overlap 884407 AAAGGCAAGAAAAAA GAGC CTGA GCTC TTTTCCTTATTTATG dagA 885773 - 884430 - | alanine (or glycine):Na+ symporter TERM 1159 885515 - 885503 - G 70 -2.6 -5.1287 | TCCACATCCAAAAAA GAGC ACCAG GCCC ACCAGTCTTAATGGC TERM 1160 885736 - 885725 - G 71 -7.2 -3.92963 | CAAGAAGGACAAGAA GGGG AGGT CCCC ATACAAAGTCATCAA TERM 1161 885831 - 885809 - H 84 -8.4 -4.64766 | CCGAGACGTCAAAAA GAGGTTTGGC TTA ACCAGACCTC TGAAAGTACAAAGCT pcrA 886271 - 888598 + | ATP-dependent DNA helicase TERM 1162 888603 - 888616 + F 90 -8.1 -4.83615 | opp_overlap 888602 888603 TGAAGAAATAGAAAG GGACC GAAA GGTCC TTTTTATAAGCCCTC TERM 1163 888616 - 888603 - f 70 -8.1 -3.26559 | opp_overlap 888603, overlap 888602 TGAAGAAATAGAAAG GGACC GAAA GGTCC TTTTTATAAGCCCTC cysD 888686 - 889999 + | O-acetylhomoserine sulfhydrylase TERM 1164 890024 - 890039 + F 84 -5.4 -5.58179 | TACAAAATGATTTAG CCAGCT CTTT AGTTGG TTTTTTGTTATACTA stu0988 890060 - 890401 + | hypothetical protein stu0989 890447 - 890815 + | hypothetical protein tpx 890880 - 891374 + | thiol peroxidase TERM 1165 891379 - 891392 + F 89 -6.7 -5.59564 | opp_overlap 891379, overlap 891375 AAAGTTTATAATTAA GAGAC TTAG GTCTC TTTTTTTGCCTTTAT hsdS2 891497 - 892117 + | type I restriction-modification system specificty subunit TERM 1166 892122 - 892146 + F 84 -3.7 -5.64006 | gap 1, opp_overlap 892122 892123, overlap 892123 TTGGGAATTAACAAA G-CCAACAAA CTAAGA TTTGTTGGTC TTTTTTTCATTCACT TERM 1167 892144 - 892123 - f 70 -8.1 -3.19048 | opp_overlap 892123 892122, overlap 892122 TGGGAATTAACAAAG CCAACAAAC TAAG ATTTGTTGG TCTTTTTTTCATTCA TERM 1168 892123 - 892144 + F 81 -7.4 -4.45473 | opp_overlap 892122 892123, overlap 892122 TGGGAATTAACAAAG CCAACAAA CTAAGA TTTGTTGG TCTTTTTTTCATTCA stu0992 892138 - 892341 + | hypothetical protein stu0993 892355 - 893140 + | hypothetical protein TERM 1169 893247 - 893233 - f 93 -5 -6.07969 | CAAAACCAAAAAAAA TCTGTC GCA AACAGA GAAACCACTCAGCCA TERM 1170 893266 - 893278 + F 71 -6.3 -4.1891 | overlap 893260 ACCACTCAGCCATTT GGTAA TGG TTACC TTTCTGTTGAACAGG stu0994 893515 - 893670 + | hypothetical protein truB 893792 - 894673 + | tRNA pseudouridine synthase B TERM 1171 894823 - 894808 - g 72 -4.7 -4.7254 | opp_overlap 894808 894806, overlap 894820 ATTGCTGATGAAAAA CAGCT TGAAGT AGCTG TCTTTACCTTTAACG ribC 894670 - 895581 + | bifunctional riboflavin kinase/FMN adenylyltransferase spxA 895652 - 896065 + | transcriptional regulator Spx TERM 1172 896097 - 896128 + G 93 -10.9 -5.09225 | CCACTCGATCCATCA TGGAGCACTGAGG AAATTA CCACAGTGCTTCA TTTTTTGAGTCAGGT stu0998 896058 - 896339 + | hypothetical protein TERM 1173 896985 - 896974 - g 86 -4.4 -5.44721 | ATTATGGGAAAAAAA TTGG ACTA CCAA CTTGAAACCATTACT suhB 896329 - 897096 + | inositol monophosphatase family protein stu1000 897148 - 898488 + | rRNA methyltransferase, putative TERM 1174 898660 - 898628 - g 100 -10.8 -5.57888 | gap 2, opp_overlap 898649 ATGAAAAAAACAAAA GGCC-TTGC-AGTGAT TTT ATCACTGGCAATGGCC ATGCTAGTCTTAACT pstS 898589 - 899488 + | phosphate ABC uptake transporter substrate binding protein pstC1 899491 - 900405 + | phosphate ABC uptake transporter membrane-spanning protein TERM 1175 901172 - 901199 + GF 81 -9.2 -3.71148 | gap 1 ACACCTGACGCCACT GCAGTGTCTGCTG GTT CAGCAG-CAGTGC TTATGATTTTCATCT pstC2 900377 - 901279 + | phosphate ABC uptake transporter membrane-spanning protein TERM 1176 901777 - 901746 - g 79 -9.6 -3.62046 | overlap 901752 901754 GGACTTTGGGAACAA GTAAAAGATGACCT TCAT AAGTCAGCTTTTAC ACTCTCTGGTGGTCA pstB1 901290 - 902093 + | phosphate ABC uptake transporter ATP-binding protein TERM 1177 902601 - 902613 + G 73 -7.7 -3.9461 | CGGGTACTTGCCACC TCACC AAA GGTGA TTCTTCTTGACGAAC pstB2 902106 - 902864 + | phosphate ABC uptake transporter ATP-binding protein TERM 1178 903121 - 903081 - g 75 -2.7 -5.28826 | gap 1, opp_overlap 903118, overlap 903108 903118 AAACTTGAGAAAAAA TCACTTGA-ACTTATTGC GCTCCA GCAACCTGTATCAAGTGA TTTACGTACTGTAAT phoU 902889 - 903545 + | phosphate uptake regulatory protein TERM 1179 903571 - 903598 + F 100 -11.4 -4.87892 | opp_overlap 903571 AAATCTATGTTATAA TGAGCCTGTATT GAAT AATTCAGGCTCA TTTCTTTTGTTAAAG TERM 1180 903598 - 903571 - f 89 -11.4 -3.34236 | opp_overlap 903571 AAATCTATGTTATAA TGAGCCTGTATT GAAT AATTCAGGCTCA TTTCTTTTGTTAAAG TERM 1181 905143 - 905127 - g 73 -6.6 -4.21607 | TCCATTGAATACAAA CTGGAA TGGGC TTCCAG ATACACTTTCAGAAG TERM 1182 905855 - 905841 - g 81 -7.2 -4.64766 | TTCATATCTTAAAAA TCAAGA AGG TCTTGA CTACGTACTAGGTCA TERM 1183 906074 - 906060 - g 81 -7.2 -4.62872 | AGGAATCTTTAAAAA TCAAGA ACG TCTTGA CCAATATATTGCATT pepN 903679 - 906219 + | lysyl-aminopeptidase, aminopeptidase N TERM 1184 906229 - 906253 + T 89 -7.2 -5.28942 | opp_overlap 906229 TATTAATATAAAAAA CAAGCTTTCC ATGAA GGAGAGTTTG TTTTTATTTACAATG TERM 1185 906253 - 906229 - T 76 -2.8 -5.49569 | opp_overlap 906229 TATTAATATAAAAAA CAAGCTTTCC ATGAA GGAGAGTTTG TTTTTATTTACAATG xerS 907451 - 906381 - | site-specific tyrosine recombinase XerS TERM 1186 906895 - 906885 - G 70 -5.4 -4.38712 | TTTATTCTTATAAAA CGAA GAT TTCG CACGATTTGAGAGCT TERM 1187 907662 - 907641 - R 83 -6.6 -4.99035 | opp_overlap 907641 907660 TTACTCATACAAAAA CAACCTGG AGTTTG CCAGATTG TTTCAAACAATGATT lplA 908665 - 907676 - | lipoate-protein ligase TERM 1188 909329 - 909339 + G 75 -5.4 -4.68593 | opp_overlap 909329 TCGAATTGTACCTAA GAGA TTT TCTC TTTTTGGATAGTCCC stu1010 908848 - 909402 + | hypothetical protein stu1011 909471 - 909899 + | hypothetical protein TERM 1189 909983 - 909964 - T 93 -7.2 -5.40072 | opp_overlap 909959 909964 TTTCGTGCAAAAAAA CAAGACCA TTTC TGATCTTG TTTTCCTTCTATACA glgP 912269 - 910005 - | glycogen phosphorylase TERM 1190 910711 - 910721 + g 89 -5.4 -5.37593 | GTGATTTTACGTTTT GGAA GGT TTCC TTTTTTGATTTCCAA TERM 1191 911032 - 911046 + g 71 -4.2 -4.96427 | opp_overlap 911032 AATTCCAACCAACGA CGGAAT GAA ATACCG TTTGTTTTGTTGTTG TERM 1192 912122 - 912147 + g 71 -4.2 -4.87318 | gap 1, overlap 912124 AGAACTCAGCTGAGA TG-TAGTAAAC TTTAC GTTTACTATCA TTTTTAGGTTTTGAA TERM 1193 912160 - 912173 + g 73 -6.7 -4.1585 | TCATTTTTAGGTTTT GAAGC AGCT GCTTC TTTTACAAATTCTAA malQ 913779 - 912271 - | 4-alpha-glucanotransferase TERM 1194 913940 - 913915 - R 100 -9.1 -5.4833 | CTAGGTAATAAAAAA TGGTTGCTAAC TTAA GTTACCAACCA AAAGTAAATATTTAA malR 914967 - 913963 - | maltose operon transcriptional repressor, putative stu1015 915314 - 915454 + | maltose/maltodextrin ABC uptake transporter substrate-binding protein, truncated TERM 1195 915487 - 915465 - f 74 -5.6 -4.81843 | AATAATCAAAAGAAA TTGCTGAGCA AGA TACTGAGCAA GCTGCTTTAGGTGCT stu1016 915626 - 916012 + | maltose/maltodextrin ABC uptake transporter substrate-binding protein, truncated TERM 1196 916239 - 916261 + G 74 -6.2 -4.47456 | overlap 916242 TGGACCTTGATTTGG GCAGTTGCCG CAA CAGCAACTAC TTTCTTCTTCGGTAT TERM 1197 916419 - 916433 + G 77 -8.6 -3.85092 | GATGGCCCTTTGAAT GGTTTG CTT CAAACC TTTCATATCACTAAT stu1017 916026 - 916706 + | maltose/maltodextrin ABC uptake transporter membrane-spanning protein, truncated TERM 1198 916936 - 916922 - T 100 -7.1 -5.77988 | opp_overlap 916922 ACATACATAAAAAAA GGACC TATCC GGTCC TCTCTAGATGTTAGC TERM 1199 917248 - 917219 - T 79 -5.7 -5.04385 | gap 1 GATACTGCTAAAAAA CCCCGAGCTTATCT GGA AG-TTAGCCCGAGG TCTTTTCTTGCCTAT tatA 917541 - 917353 - | Sec-independent protein translocase protein tatA, putative tatC 918282 - 917554 - | Sec-independent protein translocase protein tatC TERM 1200 917933 - 917921 - G 70 -5.5 -4.33182 | GGACTCACAAAATAA TAGCC AAA GGCCA AACCCAAAACAAAAC TERM 1201 917963 - 917948 - G 70 -2.6 -5.14698 | gap 1 AAACCCAAAACAAAA CAGACAA AAG TTG-CTG GAATATAGGCAAAGA stu1022 919990 - 918269 - | hypothetical protein TERM 1202 918691 - 918705 + gr 74 -6.4 -4.3467 | TGGATACAAAACTTC CAGTGG CTG TCACTG TTTTCATCTGACGGT stu1023 921137 - 919932 - | hypothetical protein TERM 1203 920681 - 920700 + gr 71 -5 -4.57569 | GGAAGAGCTTAGGAC GCTTGG ATTCTAGG CCAAGC TTTTTAAGAAAATCA stu1024 921970 - 921143 - | hypothetical protein TERM 1204 922265 - 922244 - R 100 -9.5 -5.60689 | opp_overlap 922244 CTAGATAAGAAAAAA CCAAGGAAT TCTT ACTCCTTGG TTTTTGACTATTTAT TERM 1205 922244 - 922265 + r 83 -7.3 -4.7889 | opp_overlap 922244 CTAGATAAGAAAAAA CCAAGGAAT TCTT ACTCCTTGG TTTTTGACTATTTAT fatB 923323 - 922277 - | iron compound ABC uptake transporter substrate-binding protein TERM 1206 923024 - 923038 + g 88 -2.8 -5.93252 | overlap 923026 TTCTTTCAGATTACC GACATT AGT AATGCC TTTTTTATTTTTGAA fatA 924090 - 923335 - | iron compound ABC uptake transporter ATP-binding protein fatC 925073 - 924087 - | iron compound ABC uptake transporter membrane-spanning protein fatD 926026 - 925052 - | iron compound ABC uptake transporter membrane-spanning protein TERM 1207 925600 - 925582 - G 79 -8.8 -4.11183 | opp_overlap 925581 925591 925592 TGCCACTATAAATAA GTCCGACC AAG GGTAGGAC CCATTTTTCCTTAAA TERM 1208 925591 - 925603 + g 70 -3.3 -4.87893 | opp_overlap 925582, overlap 925581 925592 AAATAAGTCCGACCA AGGGT AGG ACCCA TTTTTCCTTAAACTT stu1029 926773 - 926504 - | alkaline amylopullulanase, truncated stu1031 927390 - 926776 - | alkaline amylopullulanase, truncated stu1032 927564 - 927454 - | alkaline amylopullulanase, truncated stu1033 928564 - 927497 - | alkaline amylopullulanase, truncated TERM 1209 927833 - 927810 - GR 71 -9 -3.14581 | gap 1, overlap 927808 927813 927828 GAATCCACTAAGACA CGACGACTCAT ATA ATGAGTCGT-G CCTAGACGACCGCCT TERM 1210 927831 - 927813 - GR 84 -11.8 -2.77148 | overlap 927810 927808 927828 TCCACTAAGACACGA CGACTCAT ATA ATGAGTCG TGCCTAGACGACCGC stu1034 928687 - 928583 - | alkaline amylopullulanase, truncated TERM 1211 928834 - 928856 + H 76 -7.8 -3.91213 | CAAAATATAGGCAGT GAGAAGAATT ATT ACTTCTTCTC TGTTTATTTGTAGTT TERM 1212 929006 - 928952 - H 79 -5.3 -5.19879 | gap 1 GTGTAAACACAAAAA GGAATAAATC-CGTTATAGTAGAGTT GCGA AACATTACTAGAAAGAGATTTATTCC TATGACTCAGTTTAC tnp1191 929095 - 930183 + | IS1191 transposase stu1041 930565 - 930218 - | UDP-N-acetylglucosamine enolpyruvyl transferase, putative, truncated stu1042 931133 - 930567 - | hypothetical protein TERM 1213 930680 - 930692 + g 77 -4.8 -4.97312 | AAGCATGTTTTGACG GTGG TATAT CCAC TTTTTCATTAGTTTT TERM 1214 931073 - 931085 + g 74 -6.3 -4.31688 | GTCCCTCTGGATACT GTACT ATC AGTAC TTTTGAATTCATATT tyrSE 932835 - 931927 - | tyrosyl-tRNA synthetase E TERM 1215 932917 - 932890 - H 87 -13 -2.56828 | opp_overlap 932893 932914, overlap 932887 932893 932912 932914 AAACAGTTATAATAT TAAGTCTTTAGA GTCT TCTAAAGACTTA GGTGTACACCTAAGT TERM 1216 932914 - 932893 - H 85 -10.3 -3.42459 | opp_overlap 932893, overlap 932890 932887 932912 CAGTTATAATATTAA GTCTTTAGA GTCT TCTAAAGAC TTAGGTGTACACCTA TERM 1217 932893 - 932914 + H 80 -10.3 -3.12668 | opp_overlap 932893 932890 932887 932912 CAGTTATAATATTAA GTCTTTAGA GTCT TCTAAAGAC TTAGGTGTACACCTA TERM 1218 932931 - 932914 - H 75 -8.5 -3.35224 | opp_overlap 932914, overlap 932890 932887 932912 AGAGTCTTCTAAAGA CTTAGGT GTAC ACCTAAG TAAATTACCCACCAA stu1044 933089 - 933943 + | MutR family transcriptional regulator TERM 1219 934038 - 934078 + T 100 -20.1 -4.08279 | opp_overlap 934028 934041 934050 934052, overlap 934050 GAAACTAGCTTGAAG CCATAGTAAAAAGTCTTGG TAG TCAAGGCTTTTTACTATGG TTCTTTGTCAACTGT TERM 1220 934075 - 934041 - T 82 -11.7 -2.53382 | opp_overlap 934038 934050, overlap 934050 934052 ACTAGCTTGAAGCCA TAGTAAAAAGTCTTG GTAGT CAAGGCTTTTTACTA TGGTTCTTTGTCAAC TERM 1221 934050 - 934066 + T 75 -5.1 -4.84274 | opp_overlap 934041 934050 934052, overlap 934038 AAGCCATAGTAAAAA GTCTTGG TAG TCAAGGC TTTTTACTATGGTTC TERM 1222 934120 - 934142 + T 100 -12.8 -5.10064 | opp_overlap 934117 934114 934124 AAAAGCTAACATCTA GAGAGGACCT GAT AGGTCTTCTC TTTTTGTATGTTCAG tnp1193 935366 - 934110 - | IS1193 transposase TERM 1223 935487 - 935438 - R 100 -10.2 -4.26188 | opp_overlap 935438 935439, overlap 935439 TGTATATACTCAAAA CGCTCTATAATCTCTACGGTGG TTTTAC CCACTACAGAAATTATAGAGCC TTTACTATTTATCTT TERM 1224 935439 - 935486 + r 74 -9.3 -3.02627 | opp_overlap 935439 935438, overlap 935438 GTATATACTCAAAAC GCTCTATAATCTCTACGGTGG TTTTAC CCACTACAGAAATTATAGAGC CTTTACTATTTATCT TERM 1225 935486 - 935439 - R 93 -13.7 -3.15231 | opp_overlap 935438 935439, overlap 935438 GTATATACTCAAAAC GCTCTATAATCTCTACGGTGG TTTTAC CCACTACAGAAATTATAGAGC CTTTACTATTTATCT TERM 1226 935549 - 935537 - R 73 -7.7 -3.8917 | TTTCAAGCAGAACAA CACAC TTT GTGTG AACTGAATGATTTCT stu1046 936246 - 935851 - | endolysin, putative, truncated stu1047 936631 - 936362 - | hypothetical protein TERM 1227 936936 - 936914 - R 91 -5.6 -5.86976 | overlap 936916 TGACAAAAGAAAAAA TCCTCAAACA ACC TGTCCGAGAA TTTAATTTAGCTTAT acoL 938702 - 936948 - | acetoin/pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase TERM 1228 937663 - 937675 + g 70 -2.7 -5.03314 | overlap 937660 ATAATCTTCATACCC TTCTT AGA AAGGA TTTTTTGAAGCTCAA TERM 1229 938745 - 938781 + r 72 -5 -4.65263 | gap 1, opp_overlap 938730, overlap 938746 GCGACTGAAAATTAG GCGCCCGGC-ACGTCAG CCTG CTGGCGTAGACGGACGG TTTATTTTCCAAGCT TERM 1230 938746 - 938780 + r 75 -8.5 -3.38435 | gap 1, opp_overlap 938730, overlap 938745 CGACTGAAAATTAGG CGCCCGGC-ACGTCAG CCTG CTGGCGTAGACGGACG GTTTATTTTCCAAGC acoC 940261 - 938873 - | branched-chain alpha-keto acid dehydrogenase subunit E2 acoB 941432 - 940419 - | acetoin dehydrogenase complex, E1 component, beta subunit TERM 1231 941310 - 941348 + g 100 -17.7 -3.64682 | opp_overlap 941310 941312 GAAGTCACCACCATA GATCCCGACATCTTC ACCCATAAG GAAGATGTCGGGATC TTTACGCATTTCCTC TERM 1232 941348 - 941310 - G 100 -17.7 -2.83641 | gap 1, opp_overlap 941310, overlap 941312 GAAGTCACCACCATA GATCCCGACATCTTCACC CATA AG-GAAGATGTCGGGATC TTTACGCATTTCCTC TERM 1233 941346 - 941312 - G 95 -14.5 -2.96395 | gap 1, opp_overlap 941310, overlap 941310 AGTCACCACCATAGA TCCCGACATCTTCACC CATA AG-GAAGATGTCGGGA TCTTTACGCATTTCC acoA 942413 - 941442 - | acetoin dehydrogenase complex, E1 component, alpha subunit TERM 1234 942338 - 942358 + g 83 -12.7 -2.6027 | opp_overlap 942338, overlap 942334 GAACTAATTTATTAA TCCGTGAAT CGA ATTCACGGA TACGTTCCATTTTAG TERM 1235 942358 - 942338 - G 85 -12.7 -3.23598 | opp_overlap 942334 942338 GAACTAATTTATTAA TCCGTGAAT CGA ATTCACGGA TACGTTCCATTTTAG stu1052 943211 - 942903 - | hypothetical protein stu1053 943988 - 943467 - | hypothetical protein pyrC 945448 - 944180 - | dihydroorotase ung 946148 - 945468 - | uracil-DNA glycosylase TERM 1236 946537 - 946520 - g 80 -11.3 -2.79915 | opp_overlap 946502 946520 ACTCATTGGATTACA GCTGGCT AGTC AGCCAGC TGATTCAGATCATAG TERM 1237 946520 - 946537 + G 79 -11.3 -2.74012 | opp_overlap 946520, overlap 946502 ACTCATTGGATTACA GCTGGCT AGTC AGCCAGC TGATTCAGATCATAG stu1056 946335 - 947531 + | hypothetical protein TERM 1238 947532 - 947547 + F 86 -2.5 -5.88565 | AAAGATAAAGAGTAA CGAGC AAATCA GCTTG TTTTTTTGTTATCAA TERM 1239 947746 - 947722 - f 72 -9.3 -2.76361 | overlap 947721 TATTAAGTATATAAC TGGGTTCCACC TAT GACAGAACCCA TATAAAATAAAGGAG stu1057 947804 - 947971 + | D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated stu1058 947952 - 948134 + | D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated stu1059 948156 - 949097 + | D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein, truncated TERM 1240 949139 - 949110 - T 77 -8.7 -3.59936 | opp_overlap 949110 949116, overlap 949116 TAAATGAATAACTAA GAAAAACGTGCTC AGAA AAGCACGTTTTTA GTTATCTCCAAGAAA TERM 1241 949116 - 949133 + T 88 -7 -4.96646 | opp_overlap 949110 949116, overlap 949110 AATAACTAAGAAAAA CGTGCT CAGAAA AGCACG TTTTTAGTTATCTCC TERM 1242 949133 - 949116 - T 89 -7.7 -5.23396 | opp_overlap 949116 949110, overlap 949110 AATAACTAAGAAAAA CGTGCTC AGAA AAGCACG TTTTTAGTTATCTCC stu1060 949988 - 949137 - | putative phosphoesterase stu1061 950473 - 949985 - | hypothetical protein TERM 1243 950495 - 950483 - R 77 -4.8 -5.15969 | TTTCAATGCAAAAAA CTCC GTGAT GGAG TCCCCTGCAAAAACA stu1062 952185 - 950608 - | hypothetical protein stu1063 952487 - 952203 - | hypothetical protein TERM 1244 952644 - 952621 - R 93 -9.8 -4.09739 | opp_overlap 952621 TTAATCCTCTTAAAA GTTATAGTAT CATA ATACTATAAC TTTATTCAAATAGCT TERM 1245 952621 - 952644 + r 93 -9.8 -4.18488 | opp_overlap 952621 TTAATCCTCTTAAAA GTTATAGTAT CATA ATACTATAAC TTTATTCAAATAGCT stu1064 952965 - 952735 - | 6-phospho-beta-glucosidase, truncated stu1065 953207 - 952962 - | 6-phospho-beta-glucosidase, truncated stu1066 953779 - 953243 - | 6-phospho-beta-glucosidase, truncated stu1067 954003 - 953806 - | 6-phospho-beta-glucosidase, truncated TERM 1246 954240 - 954227 - R 85 -6.7 -5.30189 | opp_overlap 954227 TATAACACGAAAAAA CAGAC CGAA GTCTG TTTGAATTAATCACT stu1068 955383 - 954247 - | hypothetical protein TERM 1247 954513 - 954501 - G 70 -3.3 -4.99645 | AGGCGACAAATAAAA GTGCC AAG GTCAC GGAATGAGTCATAAT TERM 1248 955336 - 955299 - G 71 -7.2 -3.89215 | overlap 955302 955333 TGTTACAAATCGAAA CAACTGTTTCCCAATA GGTATA TATCAAGAAACAGCTG AAAAACAGCACAACC stu1069 955689 - 955462 - | hypothetical protein TERM 1249 955754 - 955726 - R 70 -7.3 -3.76402 | ACTTTACCCACCAAA CTGGGCATAGTGG TCC CCAAAATGCCCCG CAACAGATGTCTTGG stu1070 955977 - 955714 - | hypothetical protein stu1071 956468 - 956073 - | hypothetical protein stu1075 957092 - 957667 + | hypothetical protein TERM 1250 957710 - 957757 + F 100 -18.1 -4.65895 | opp_overlap 957749 ACAGGAGATATATTG GCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGC TTTTTGAATGCAGAC TERM 1251 959072 - 959058 - g 100 -7.1 -5.77988 | opp_overlap 959058 ACATACATAAAAAAA GGACC TATCC GGTCC TCTATAGATGTTAGC tnp1193 957830 - 959086 + | IS1193 transposase stu1088 959726 - 959094 - | hypothetical protein TERM 1252 959779 - 959730 - gR 100 -16.7 -4.72846 | opp_overlap 959702 959742 GTATATACTCAAAAA GGCTCCATAATTTCCATGGTGGA TTTA CCCACTACAGAAATTATAGAGCC AAATGTCATCGCCAT TERM 1253 960471 - 960500 + Gr 72 -9.4 -2.72471 | opp_overlap 960471 960478, overlap 960471 960478 TGATTGCATTGAACA GTGAAAAGGGCT GGGGAG AGCCCTTTTCAG CTTATCTCCTAAAAA TERM 1254 960471 - 960501 + Gr 80 -9.2 -3.54475 | gap 1, opp_overlap 960471 960478, overlap 960471 960478 TGATTGCATTGAACA G-TGAAAAGGGCT GGGGAG AGCCCTTTTCAGC TTATCTCCTAAAAAC TERM 1255 960500 - 960471 - gR 74 -9.4 -3.09327 | opp_overlap 960471 960471 960478, overlap 960478 TGATTGCATTGAACA GTGAAAAGGGCT GGGGAG AGCCCTTTTCAG CTTATCTCCTAAAAA TERM 1256 960478 - 960493 + Gr 71 -6.1 -4.23007 | opp_overlap 960471 960478, overlap 960471 960471 ATTGAACAGTGAAAA GGGCT GGGGAG AGCCC TTTTCAGCTTATCTC TERM 1257 960493 - 960478 - gR 72 -6.1 -4.28656 | opp_overlap 960478 960471 960471, overlap 960471 ATTGAACAGTGAAAA GGGCT GGGGAG AGCCC TTTTCAGCTTATCTC stu1087 959678 - 960529 + | hypothetical protein TERM 1258 960570 - 960523 - TR 91 -5 -5.93252 | gap 1, opp_overlap 960525 960529 960531 960532, overlap 960525 960531 960533 CCTAAAAACAAAAAA GAGATAA-AGATAGAGAGGACGA AGT TCGTCCTCTCTAGGTGTTAGCTT TTAATCTACCCACTA TERM 1259 960525 - 960568 + Tr 81 -7.6 -4.34402 | gap 1, opp_overlap 960525 960523 960531 960533, overlap 960529 960531 960532 TAAAAACAAAAAAGA GATAA-AGATAGAGAGGACGA AGT TCGTCCTCTCTAGGTGTTAGC TTTTAATCTACCCAC TERM 1260 960568 - 960525 - TR 82 -7.6 -4.585 | gap 1, opp_overlap 960525 960529 960531 960532, overlap 960523 960531 960533 TAAAAACAAAAAAGA GATAA-AGATAGAGAGGACGA AGT TCGTCCTCTCTAGGTGTTAGC TTTTAATCTACCCAC TERM 1261 960529 - 960563 + Tr 75 -8.6 -3.40592 | opp_overlap 960525 960523 960531 960533, overlap 960525 960531 960532 AACAAAAAAGAGATA AAGATAGAGAGGACGA AGT TCGTCCTCTCTAGGTG TTAGCTTTTAATCTA TERM 1262 960531 - 960561 + Tr 87 -11.2 -3.26184 | opp_overlap 960525 960523 960531 960533, overlap 960529 960525 960532 CAAAAAAGAGATAAA GATAGAGAGGACGA AGT TCGTCCTCTCTAGG TGTTAGCTTTTAATC TERM 1263 960561 - 960531 - TR 100 -11.2 -4.42491 | opp_overlap 960531 960529 960525 960532, overlap 960525 960523 960533 CAAAAAAGAGATAAA GATAGAGAGGACGA AGT TCGTCCTCTCTAGG TGTTAGCTTTTAATC TERM 1264 960532 - 960560 + Tr 95 -14.7 -2.54988 | opp_overlap 960531 960525 960523 960533, overlap 960531 960529 960525 AAAAAAGAGATAAAG ATAGAGAGGACGA AGT TCGTCCTCTCTAG GTGTTAGCTTTTAAT TERM 1265 960559 - 960533 - TR 100 -18.2 -3.77089 | opp_overlap 960532 960531 960529 960525, overlap 960531 960525 960523 AAAAAGAGATAAAGA TAGAGAGGACGA AGT TCGTCCTCTCTA GGTGTTAGCTTTTAA stu1089 961177 - 960557 - | hypothetical protein stu1090 961948 - 961247 - | hypothetical protein TERM 1266 961486 - 961476 - G 72 -4.6 -4.83246 | CCAGAAACAAACAAA GACG CCA CGCC TAGAATGGACAACCA TERM 1267 961695 - 961675 - G 71 -4 -4.90525 | overlap 961677 GAACTCCAAACAAAA CAGCCTTG CCCAC CAAAGCTA AAATACTTTCATTTG TERM 1268 962086 - 962060 - R 85 -6.7 -5.28778 | opp_overlap 962060 962078, overlap 962078 ATGAGCCATAAAAAA GAATCCTAATC ATAAA GACTAGAATTC TAGTTTTTCAGGCTC epsK 963907 - 963149 - | exopolysaccharide biosynthesis protein, glycosyl transferase TERM 1269 963550 - 963574 + g 71 -7.3 -3.90048 | overlap 963547 CTAGATAAATCTTAC CATCATTTTCT TTA AAAAAATGATG TATTTTTCGAGGAGA eps15 965012 - 963894 - | exopolysaccharide biosynthesis protein, glycosyl transferase eps14 965746 - 965123 - | TPR repeat-containing protein stu1093 965241 - 965897 + | hypothetical protein eps13 967062 - 965887 - | exopolysaccharide biosynthesis protein, putative eps12 968568 - 967069 - | exopolysaccharide biosynthesis protein, membrane protein eps11 969957 - 968965 - | exopolysaccharide biosynthesis protein, glycosyltransferase TERM 1270 969994 - 970004 + r 72 -2.6 -5.31158 | overlap 969996 969996 ATTTTATTTTCTAGT TATT AAA AATA TTTTTAATTTTTTTA TERM 1271 969996 - 970011 + r 82 -3.4 -5.72207 | overlap 969994 969996 TTTATTTTCTAGTTA TTAAAA ATAT TTTTAA TTTTTTTAATTTAAA eps10 970722 - 969982 - | exopolysaccharide biosynthesis protein, glycosyltransferase eps9 971332 - 970775 - | exopolysaccharide biosynthesis protein TERM 1272 971303 - 971293 - G 85 -2.6 -5.75599 | GAAACGATAAAAAAA TTAT TGA ATAA CTTGCCTTAATAATT eps15 972451 - 971804 - | exopolysaccharide biosynthesis protein, glycosyltransferase stu1101 972820 - 972488 - | hypothetical protein TERM 1273 972942 - 972925 - R 71 -3.5 -5.06414 | CTTCCCCAATAAAAA TTTCCTT GCCT AAAGAAA AGATTATTGTTCACT TERM 1274 973112 - 973124 + r 86 -2.7 -5.83226 | overlap 973104 CCGTTGTTAAGGAAA TTTGA CTA TCGAA TTTTTTTATTAAATT stu1102 974313 - 973462 - | hypothetical protein eps4 974935 - 974456 - | exopolysaccharide biosynthesis protein eps3 975523 - 975038 - | exopolysaccharide biosynthesis protein, glycosyltransferase eps2 975972 - 975523 - | exopolysaccharide biosynthesis protein, glycosyltransferase TERM 1275 975724 - 975703 - G 76 -2.1 -5.47821 | opp_overlap 975722, overlap 975704 ACCTAGGTAAAAAAA TGGAACTGC TACC GCTGCTCCT GATGAAATAATAACG stu1106 976400 - 975981 - | exopolysaccharide biosynthesis protein, truncated stu1107 977004 - 976420 - | exopolysaccharide biosynthesis protein, truncated epsE 978573 - 977206 - | exopolysaccharide biosynthesis protein, glycosyl-1-phosphate transferase epsD 979370 - 978630 - | exopolysaccharide exporter accessory protein epsC 980072 - 979380 - | exopolysaccharide exporter accessory protein epsB 980812 - 980081 - | exopolysaccharide biosynthesis protein TERM 1276 980257 - 980241 - G 71 -6.7 -3.98683 | opp_overlap 980252 ACCATATGAACCAAA TTTTTCT CCA AGAAAAA GCGAACACGTTTCTT TERM 1277 980791 - 980815 + g 72 -4.3 -4.7497 | opp_overlap 980788 980791 980794, overlap 980794 CAACATCAAAAACAA TATGTGAGTGA ACG TCAATCACTTA TTTTTCCTCCATCAG TERM 1278 980794 - 980812 + g 74 -6 -4.4831 | opp_overlap 980794 980791 980788, overlap 980791 CATCAAAAACAATAT GTGAGTGA ACG TCAATCAC TTATTTTTCCTCCAT epsA 982267 - 980813 - | transcriptional activator-exopolysaccharide biosynthesis TERM 1279 982608 - 982580 - R 73 -9 -3.26164 | gap 1, opp_overlap 982585, overlap 982585 ATATTAGCTACAACA CAAAAGGACGACC AAAT GG-CGTCCTTTTA CAAACTAGTCTGCAA TERM 1280 982603 - 982585 - R 80 -6.7 -4.74285 | gap 1, opp_overlap 982585, overlap 982580 AGCTACAACACAAAA GGACGACC AAAT GG-CGTCC TTTTACAAACTAGTC TERM 1281 982585 - 982603 + r 71 -6.7 -4.10161 | gap 1, opp_overlap 982585 982580 AGCTACAACACAAAA GGACGACC AAAT GG-CGTCC TTTTACAAACTAGTC deoD 983323 - 982613 - | purine nucleoside phosphorylase stu1114 984020 - 983757 - | glutamine amidotransferase (GMP synthase), truncated stu1115 984217 - 984017 - | glutamine amidotransferase (GMP synthase), truncated stu1116 985116 - 984715 - | voltage-gated chloride channel family protein, truncated punA 986284 - 985475 - | purine nucleoside phosphorylase stu1118 986724 - 986305 - | hypothetical protein stu1119 986881 - 986705 - | hypothetical protein deoB 988061 - 986850 - | phosphopentomutase TERM 1282 987242 - 987252 + gr 73 -6.8 -4.21086 | overlap 987239 987233 CCTTAATCAAATTGT CCAC ACC GTGG TTATTTGATTTGTTA TERM 1283 988123 - 988139 + r 70 -8.1 -3.2827 | opp_overlap 988122 988125 TTCTATATAATAATC TAGTGAT AAC ATCACTA TTAGGTTACTTTATT rpiA 988867 - 988187 - | ribose-5-phosphate isomerase A TERM 1284 988807 - 988779 - G 76 -6.7 -4.38748 | TCTACAAAGAAATAA GCTGTTGAGCCAG TAC CTAGTCCAACAAC CATGCCATCTTCAAC stu1122 989430 - 989158 - | hypothetical protein TERM 1285 989422 - 989477 + g 91 -13.1 -3.17382 | gap 1, opp_overlap 989432, overlap 989418 989426 989432 989436 TTCACGCATGCTTGA CTGATTCAAATTATCATAGGTGACAA CAAAT TTGTCACCTATG-TAATTTGAATGAA TTCAGTCTCATTATT TERM 1286 989426 - 989473 + g 100 -18.3 -2.56273 | gap 1, opp_overlap 989432, overlap 989418 989422 989432 989436 CGCATGCTTGACTGA TTCAAATTATCATAGGTGACAA CAAAT TTGTCACCTATG-TAATTTGAA TGAATTCAGTCTCAT TERM 1287 989432 - 989467 + r 90 -11.5 -3.68619 | gap 1, opp_overlap 989432, overlap 989426 989422 989436 CTTGACTGATTCAAA TTATCATAGGTGACAA CAAAT TTGTCACCTATG-TAA TTTGAATGAATTCAG TERM 1288 989467 - 989432 - R 90 -11.5 -3.6682 | gap 1, opp_overlap 989432 989426 989422 989436 CTTGACTGATTCAAA TTATCATAGGTGACAA CAAAT TTGTCACCTATG-TAA TTTGAATGAATTCAG TERM 1289 989436 - 989464 + r 95 -14.8 -2.94888 | opp_overlap 989432, overlap 989432 989426 989422 ACTGATTCAAATTAT CATAGGTGACAA CAAAT TTGTCACCTATG TAATTTGAATGAATT stu1123 989654 - 989496 - | hypothetical protein TERM 1290 989776 - 989798 + r 100 -12.8 -5.10064 | opp_overlap 989773 989770 989780 AAAAGCTAACATCTA GAGAGGACCT GAT AGGTCTTCTC TTTTTGTATGTTCAG tnp1193 991022 - 989766 - | IS1193 transposase TERM 1291 991143 - 991094 - R 100 -10.2 -4.26188 | opp_overlap 991093 991094 991095, overlap 991095 TGTATATACTCAAAA CGCTCTATAATCTCTACGGTGG TTTTAC CCACTACAGAAATTATAGAGCC CTTTATCTTTATCAT TERM 1292 991142 - 991095 - R 93 -13.7 -3.15231 | opp_overlap 991095 991094 991093, overlap 991094 GTATATACTCAAAAC GCTCTATAATCTCTACGGTGG TTTTAC CCACTACAGAAATTATAGAGC CCTTTATCTTTATCA TERM 1293 991095 - 991142 + r 72 -9.3 -2.53244 | opp_overlap 991094 991095, overlap 991094 991093 GTATATACTCAAAAC GCTCTATAATCTCTACGGTGG TTTTAC CCACTACAGAAATTATAGAGC CCTTTATCTTTATCA stu1125 991950 - 991534 - | hypothetical protein TERM 1294 992218 - 992207 - R 88 -7.2 -4.90906 | TTATAACATCAAAAA GCCC CAAA GGGC AAAAATCTTAACAAT stu1126 992874 - 992308 - | hypothetical protein TERM 1295 992652 - 992636 - G 83 -5.1 -5.27335 | overlap 992637 CCCGGGAAATAAAAA TCCATTG GTA CAATGGC AAACAGACCTGATTC TERM 1296 992651 - 992637 - G 73 -8.6 -3.75678 | overlap 992636 CCGGGAAATAAAAAT CCATTG GTA CAATGG CAAACAGACCTGATT TERM 1297 992798 - 992837 + g 73 -2.2 -5.28831 | opp_overlap 992804 992809, overlap 992799 992802 ATCCTCGCAGTTTTT GGAATACTAAACAAGG GTTTGATA CCTTGTTCAGTATACG TTTTATTTTGTTCGT TERM 1298 992925 - 992911 - R 95 -8.6 -5.75342 | opp_overlap 992911 TTCCTCCAAAAAAAA GAGACA AAA TGTCTC TTTTTTTACTTGATC TERM 1299 992911 - 992925 + r 95 -8.6 -5.65513 | opp_overlap 992911 TTCCTCCAAAAAAAA GAGACA AAA TGTCTC TTTTTTTACTTGATC pepV 994337 - 992931 - | dipeptidase PepV xylH 994568 - 994753 + | 4-oxalocrotonate tautomerase stu1129 995302 - 994829 - | hypothetical protein TERM 1300 995325 - 995344 + r 100 -13.6 -4.01603 | opp_overlap 995325 TCCTTTTAATCAAAA CCACCCGT GAGA ACGGGTGG TTTGCTCTTTGGCTG TERM 1301 995344 - 995325 - R 100 -13.6 -4.4078 | opp_overlap 995325 TCCTTTTAATCAAAA CCACCCGT GAGA ACGGGTGG TTTGCTCTTTGGCTG TERM 1302 995383 - 995363 - R 89 -11.1 -3.53012 | opp_overlap 995355 GCTCTTTGGCTGAAA GCCTCTGCT ACC AGCCGAGGC CTAAAGGCCTACCGA TERM 1303 995431 - 995447 + r 80 -9.4 -3.68036 | overlap 995430 995445 CCACCTTTGCTAGCT GACCCG ACTAG CGGGTC TATTTTAGACTACTT stu1130 995630 - 995457 - | hypothetical protein TERM 1304 996072 - 996088 + r 86 -10.9 -3.23638 | opp_overlap 996072 CGTGAGACAAAAAAA GATGGGT AAA ACCCATC TTAATCACTATTTAC TERM 1305 996088 - 996072 - R 100 -10.9 -5.71712 | opp_overlap 996072 CGTGAGACAAAAAAA GATGGGT AAA ACCCATC TTAATCACTATTTAC rplT 996455 - 996096 - | 50S ribosomal protein L20 rpmI 996712 - 996512 - | 50S ribosomal protein L35 TERM 1306 996740 - 996753 + r 72 -2.5 -5.24531 | overlap 996737 CTCTTAAAATAGTGT TAATT TGAC AATTA TTTTTTGTCAGGAAT infC 997281 - 996751 - | translation initiation factor IF-3 TERM 1307 996826 - 996839 + g 72 -3.1 -5.01732 | TCTTTGCTCAATAAT CGCAA TATC TTGTG TTTTTTCAGCAAATT TERM 1308 997331 - 997309 - R 100 -11.3 -5.01422 | TTAGAGAAAAACAAA GCGGACTTG ATATA CAAGCCCGC ACACATAATATCCCT cmk 998121 - 997441 - | cytidylate kinase TERM 1309 998066 - 998036 - G 72 -9.9 -2.95751 | opp_overlap 998035 998034 998038, overlap 998038 GTATCAAGATAAGTA TAGCCAAGATTTT TTGCG ATAATCTTGGCTA CTGTACTTTTTCCAC stu1136 998771 - 998142 - | hypothetical protein TERM 1310 998328 - 998346 + g 72 -9.6 -3.01831 | ACTTGATGGTATTGT TGCAGCTG AGT CAGTTGCA TAGTCTTTTTCAACA fer 998817 - 999014 + | ferredoxin stu1138 999498 - 998998 - | pore-forming peptide, putative pepT 1000778 - 999555 - | peptidase T TERM 1311 1000845 - 1000829 - R 100 -10.9 -4.95758 | ATTATAGCATAAAAA CCCATCA ATA TGATGGG TTAAACCGTATAACT TERM 1312 1000980 - 1000922 - R 100 -15.2 -4.10161 | gap 2, opp_overlap 1000939, overlap 1000923 1000926 1000939 TAGCATTCGCTAAAA CCAATACCACTAAAAAAGCTGGAGACTT TTGAT AAGTTTCCAGCTTTTTTAGTGGTATT-- GAAATATTAATCCAC TERM 1313 1000981 - 1000923 - R 100 -29.5 -3.05775 | opp_overlap 1000939, overlap 1000922 1000926 1000939 AGCATTCGCTAAAAC CAATACCACTAAAAAAGCTGGAGACTT TTGAT AAGTTTCCAGCTTTTTTAGTGGTATTG AAATATTAATCCACA TERM 1314 1000978 - 1000926 - R 100 -25.4 -3.67175 | opp_overlap 1000939, overlap 1000922 1000923 1000939 ATTCGCTAAAACCAA TACCACTAAAAAAGCTGGAGACTT TTGAT AAGTTTCCAGCTTTTTTAGTGGTA TTGAAATATTAATCC TERM 1315 1000939 - 1000965 + r 100 -11.7 -5.2112 | opp_overlap 1000926 1000922 1000923 1000939 AATACCACTAAAAAA GCTGGAGACTT TTGAT AAGTTTCCAGC TTTTTTAGTGGTATT TERM 1316 1000965 - 1000939 - R 100 -9.5 -5.2112 | opp_overlap 1000939, overlap 1000926 1000922 1000923 AATACCACTAAAAAA GCTGGAGACTT TTGAT AAGTTTCCAGC TTTTTTAGTGGTATT sipB 1001544 - 1000987 - | signal peptidase I TERM 1317 1001205 - 1001180 - G 72 -4.7 -4.74103 | GTTCCAATTGAAAAA TCATCTGTGAA AAAA TTCCCAGGTGA AACGGTTGCTAAATA stu1141 1002926 - 1001667 - | hypothetical protein TERM 1318 1002732 - 1002721 - GR 72 -4.4 -4.67038 | opp_overlap 1002721 TCTGGAAAATCAAAA CGAA CTTT TTCG TAAATTTCCTGTGCC stu1142 1004064 - 1002886 - | hypothetical protein TERM 1319 1003427 - 1003450 + gr 81 -7.5 -4.27861 | opp_overlap 1003427 AAGCGCGTCGGTAAA GCTGAGACA AAGCTA TGTTTCAGC TTTTGACTATCTCTT mutT 1004557 - 1004075 - | 7,8-dihydro-8-oxoguanine-triphosphatase TERM 1320 1004701 - 1004683 - R 93 -8.2 -5.54907 | opp_overlap 1004685 TTGACAAAACAAAAA GAGAACCA AAT TAGTTCTC TCTAGACTTCTTTAA ftsX 1005678 - 1004713 - | cell division ABC transporter, permease TERM 1321 1005281 - 1005297 + gr 71 -5.1 -4.51933 | overlap 1005283 GTCTCGAAACTTGAC CCCATTG TTT CAATGAG TTGTTTCTTTTGTTC ftsE 1006342 - 1005635 - | cell division ATP-binding protein prfB 1007428 - 1006415 - | peptide chain release factor 2 TERM 1322 1007468 - 1007485 + r 71 -3.5 -5.03747 | gap 1, overlap 1007454 1007459 CGAAGCTCACGAGCT TCTCTTGA TTT TCA-GAGA TTTTTTGGCGAATTT stu1148 1008684 - 1007566 - | hypothetical protein TERM 1323 1009305 - 1009325 + G 70 -2.5 -5.07567 | CACCATGACTCACGA GCGTTTTAA ACC TTTTAACGC TTTTTTAGGATCTGA TERM 1324 1009612 - 1009593 - g 83 -3.6 -5.56568 | opp_overlap 1009593 AGATTACGAAAAAAA GGAACT AGCAAATG AGTTCC TTTCATCTATGACAT stu1147 1008697 - 1009641 + | hypothetical protein TERM 1325 1009660 - 1009644 - T 87 -10.9 -3.52102 | opp_overlap 1009644 ATTCGATTTATAGAA CGACTCT TTG AGAGTCG TTTTTTAGTCGATGA TERM 1326 1009644 - 1009660 + T 100 -10.9 -5.1675 | opp_overlap 1009644 ATTCGATTTATAGAA CGACTCT TTG AGAGTCG TTTTTTAGTCGATGA nfrA 1010411 - 1009665 - | nitro/flavin reductase TERM 1327 1010511 - 1010490 - R 88 -7.3 -5.19328 | opp_overlap 1010490 ATGTGATAAGAAAAA GCCAAAGAC CATT GTCTCTGAC TTTATATCTTAAATA pacL2 1013204 - 1010520 - | Ca2+, Mn2+-P-type ATPase TERM 1328 1013303 - 1013276 - R 93 -9.3 -4.41797 | opp_overlap 1013275, overlap 1013247 1013245 AAAATCATACCAAAA GAGACCTGTTT AATTAA AAACAAGTCTC GCTGTTTAAGAATAT stu1151 1013856 - 1013470 - | hypothetical protein stu1152 1014265 - 1013948 - | putative acetyltransferase stu1153 1014716 - 1014579 - | acetyltransferase, truncated TERM 1329 1015541 - 1015551 + G 73 -5.4 -4.49344 | opp_overlap 1015541 CAGCCATTGCCAAAC TTCC ACA GGAA TTTTATGATCGCTTT stu1154 1015036 - 1015845 + | hypothetical protein murM 1015847 - 1017061 + | peptidoglycan branched peptide synthesis protein, alanine adding enzyme TERM 1330 1017078 - 1017101 + T 100 -9.6 -5.65678 | opp_overlap 1017078 GGATAGTAGTTAAAA TGAGACTTCC TTTT GGAAGCCTCA TTTTTTATCTTTTAT TERM 1331 1017101 - 1017078 - T 100 -11.8 -4.22652 | opp_overlap 1017078 GGATAGTAGTTAAAA TGAGACTTCC TTTT GGAAGCCTCA TTTTTTATCTTTTAT TERM 1332 1017517 - 1017494 - T 84 -8.2 -4.57569 | opp_overlap 1017494 1017513 CTATCCTTTTAAAAA GCCACACTAA ACTA TTAGTGCAGC TCTTCTGCTATTGTT vicX 1018363 - 1017533 - | hypothetical protein hk05 1019691 - 1018351 - | sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK Spy) rr05 1020391 - 1019684 - | response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) TERM 1333 1020238 - 1020256 + g 72 -3.1 -5.15969 | CAGGCAACATCAAGT CCAGAAT AACCA AGTCTGG TTTTTTAGCTTCAAA TERM 1334 1020488 - 1020474 - H 79 -4.2 -5.23316 | opp_overlap 1020474, overlap 1020476 TATTATACCAAAAAA TAGGTC AAG GACCAA GTTTCGAGTATGCCT TERM 1335 1020486 - 1020476 - H 71 -6.8 -4.23988 | opp_overlap 1020474, overlap 1020474 TTATACCAAAAAATA GGTC AAG GACC AAGTTTCGAGTATGC TERM 1336 1020892 - 1020876 - H 72 -8.1 -3.39574 | overlap 1020874 TAAAAAATATGAACA TGTTAGA AAA TCTAACA AGCAAATCCATTATA stu1161 1020918 - 1021685 + | polar amino acid ABC uptake transporter ATP-binding protein stu1162 1021697 - 1022530 + | polar amino acid ABC uptake transporter substrate binding protein stu1163 1022548 - 1023246 + | polar amino acid ABC uptake transporter membrane-spanning protein TERM 1337 1023242 - 1023231 - f 71 -3 -5.04082 | TAAAGAAGAACAAAA TAAG AAAG CTTA CTAAGGAGGTCCATT stu1164 1023258 - 1023908 + | polar amino acid ABC uptake transporter membrane-spanning protein TERM 1338 1023906 - 1023934 + T 79 -8.4 -4.07124 | gap 1, opp_overlap 1023901 1023906 1023913 1023914, overlap 1023914 GAGCAAGCTAGTGAA TAAAAAACTCACC TTGG GGTG-GTTTTTTA TTTGTCTAGATACTA TERM 1339 1023927 - 1023913 - T 74 -2.1 -5.4833 | gap 1, opp_overlap 1023906 1023914, overlap 1023901 1023906 1023914 CTAGTGAATAAAAAA CTCACC TTGG GGTG-G TTTTTTATTTGTCTA TERM 1340 1023914 - 1023927 + T 85 -4.5 -5.76237 | opp_overlap 1023901 1023913 1023906 1023914, overlap 1023906 TAGTGAATAAAAAAC TCACC TTGG GGTGG TTTTTTATTTGTCTA TERM 1341 1023948 - 1023977 + T 91 -12.3 -3.18199 | opp_overlap 1023954, overlap 1023954 TATTTGTCTAGATAC TAAAAACGACTCC ACTC GGAGTCGTTTTTC TTCAATTCACCGTTA TERM 1342 1023954 - 1023971 + T 100 -11.3 -5.13741 | opp_overlap 1023954, overlap 1023948 TCTAGATACTAAAAA CGACTCC ACTC GGAGTCG TTTTTCTTCAATTCA TERM 1343 1023971 - 1023954 - T 100 -11.3 -4.84527 | opp_overlap 1023954 1023948 TCTAGATACTAAAAA CGACTCC ACTC GGAGTCG TTTTTCTTCAATTCA endA 1024860 - 1023979 - | competence associated membrane nuclease TERM 1344 1024721 - 1024753 + g 73 -8.6 -3.78124 | gap 1, overlap 1024709 1024743 CCTGCAACTAGGCTT GCTACTTGTCTGATA GGAT TATCAGGCGAG-AGC TTGTTACTGGTTCCT epuA 1025110 - 1024922 - | competence-associated protein murA 1026398 - 1025112 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase stu1168 1026689 - 1026453 - | hypothetical protein galE2 1027890 - 1026877 - | UDP-glucose 4-epimerase stu1170 1028108 - 1027905 - | hypothetical protein stu1171 1028360 - 1028124 - | hypothetical protein TERM 1345 1028201 - 1028191 - G 75 -8.2 -4.0492 | opp_overlap 1028191 1028187 1028199 CAATCGCCATATAAA GGGG CTA CCCC TGAATTTTCCAAATT TERM 1346 1028643 - 1028693 + r 100 -28.1 -3.03771 | opp_overlap 1028643, overlap 1028643 1028655 1028658 GACCTAAAATAAAAA CTGCTTGATTAAGAAGCGGTTTC AAAAC GAAATCGCTTCTTAATCAAGCAG TATTACCAACTATCA TERM 1347 1028693 - 1028643 - R 100 -26.6 -5.48213 | opp_overlap 1028643 1028643 1028655 1028658 GACCTAAAATAAAAA CTGCTTGATTAAGAAGCGGTTTCA AAA CGAAATCGCTTCTTAATCAAGCAG TATTACCAACTATCA TERM 1348 1028655 - 1028681 + r 84 -11.7 -3.14683 | opp_overlap 1028643, overlap 1028643 1028643 1028658 AAACTGCTTGATTAA GAAGCGGTTTC AAAAC GAAATCGCTTC TTAATCAAGCAGTAT TERM 1349 1028658 - 1028678 + r 73 -7.6 -3.71848 | opp_overlap 1028643, overlap 1028643 1028655 1028643 CTGCTTGATTAAGAA GCGGTTTC AAAAC GAAATCGC TTCTTAATCAAGCAG TERM 1350 1029320 - 1029296 - R 87 -6.6 -5.4756 | opp_overlap 1029296 AATGGGAACAAAAAA CAGAATTCAA AAAAA TTAAATTCTG TTGCTTTGATATTAT metK 1030555 - 1029362 - | S-adenosylmethionine synthetase TERM 1351 1031641 - 1031615 - g 79 -5.9 -4.99645 | opp_overlap 1031615 AGTTTATAAAGAAAA GTCCCTCGTTT TAGAC AAACAAGTGAC CTTTGAACAATCTGG birA 1030836 - 1031774 + | biotin--protein ligase TERM 1352 1031969 - 1031994 + T 81 -8.4 -4.21194 | gap 1, opp_overlap 1031966 TTATAGCAATAGTTA GAGCCTAGGAC AAGCA GTC-TAGGCTC TTTTAGATGATAGAA TERM 1353 1032120 - 1032108 - T 100 -9.1 -4.65895 | opp_overlap 1032105 GCTCGGACCTAAAAA GGTCC ACT GGACC TCCTCGATTTTGCAT TERM 1354 1032144 - 1032181 + T 80 -9.3 -3.5812 | gap 1, opp_overlap 1032157, overlap 1032146 1032150 1032157 TTTGCATTTCTTGGC TCGGACCTAAAAAGGTCC ACT GGACCTTTTTA-GTCCTC TATTTCTACTACATC TERM 1355 1032146 - 1032179 + T 100 -16.3 -3.36228 | gap 1, opp_overlap 1032157, overlap 1032144 1032150 1032157 TGCATTTCTTGGCTC GGACCTAAAAAGGTCC ACT GGACCTTTTTA-GTCC TCTATTTCTACTACA TERM 1356 1032150 - 1032176 + T 100 -16.8 -2.83921 | opp_overlap 1032157, overlap 1032146 1032144 1032157 TTTCTTGGCTCGGAC CTAAAAAGGTCC ACT GGACCTTTTTAG TCCTCTATTTCTACT TERM 1357 1032157 - 1032169 + T 100 -9.1 -4.79826 | opp_overlap 1032157, overlap 1032150 1032146 1032144 GCTCGGACCTAAAAA GGTCC ACT GGACC TTTTTAGTCCTCTAT TERM 1358 1032169 - 1032157 - T 100 -9.1 -4.65895 | opp_overlap 1032157 1032150 1032146 1032144 GCTCGGACCTAAAAA GGTCC ACT GGACC TTTTTAGTCCTCTAT dnaX 1033825 - 1032173 - | DNA polymerase III subunits gamma and tau TERM 1359 1032642 - 1032652 + g 70 -5.4 -4.42238 | GCTTTGGATTTTCGA GTAG GTG CTAC TTTTCCTTGAGATGG stu1175 1034334 - 1033825 - | hypothetical protein TERM 1360 1034225 - 1034247 + g 77 -10.6 -2.85147 | overlap 1034224 TTTAAAAGAGCTGAG GCATTGGCAA AAT TAGCCAATGC GTTGTCTTCATTAGC miaA 1035359 - 1034370 - | tRNA delta(2)-isopentenylpyrophosphate transferase stu1176 1035345 - 1035521 + | hypothetical protein TERM 1361 1035531 - 1035544 + FH 93 -8.1 -5.68039 | CGCTAAAAGTTATGG CCAGG GAAA CCTGG TTTTTTTCTGCATTT stu1178 1035574 - 1036113 + | hypothetical protein TERM 1362 1036266 - 1036247 - T 88 -7.2 -5.18357 | overlap 1036235 CAAGGTATTAAAAAA CACCTATC TCGT AATAGGTG TCAAACAACTTTAAA TERM 1363 1036370 - 1036390 + T 73 -8.3 -3.57797 | opp_overlap 1036370 1036373, overlap 1036373 GAATCGAACCAGCAA CGACTCCTT AGG AGGGAGTTG TTATATCCATTTAAC TERM 1364 1036426 - 1036442 + T 71 -3 -5.09225 | gap 1, opp_overlap 1036426 GGACTTATTAAAAAA TCTG-CC ACGA GGACAGA TTTTTTCGGTGAAAT TERM 1365 1036442 - 1036426 - T 76 -4.4 -5.1675 | opp_overlap 1036426 GGACTTATTAAAAAA TCTGCC ACGAG GACAGA TTTTTTCGGTGAAAT TERM 1366 1036453 - 1036479 + T 91 -11.8 -3.76224 | opp_overlap 1036457, overlap 1036446 1036457 ACAGATTTTTTCGGT GAAATCTGTAAA TTA TTTACGGATTTC TTTGATACGTGCAGC TERM 1367 1036457 - 1036475 + T 76 -6.8 -4.50627 | opp_overlap 1036457, overlap 1036453 ATTTTTTCGGTGAAA TCTGTAAA TTA TTTACGGA TTTCTTTGATACGTG rplS 1036812 - 1036465 - | 50S ribosomal protein L19 TERM 1368 1036796 - 1036811 + g 74 -4 -5.01497 | CCTTCTGTCAAACTT TGGATC AATG GATTCA TTTTTATATACTCCT stu1180 1038166 - 1036940 - | chloride channel (CIC) family protein TERM 1369 1037404 - 1037419 + g 70 -3.2 -4.89063 | GATAATAGGGATTGG GGAGCA AACT TGCTAC TTTCTTTTTAGCTAG aroH 1038448 - 1038176 - | hypothetical protein TERM 1370 1038513 - 1038485 - R 79 -4.6 -5.22006 | opp_overlap 1038506 CCATTATAACAAAAA TGACCTGAGG ACAAAAGAG CCTCAAGCCA TTGAATTGATTATAA stu1182 1040058 - 1038523 - | chloride channel TERM 1371 1040086 - 1040101 + r 83 -4.7 -5.58179 | opp_overlap 1040081 1040086 TTAACTACAATAAAA GCAGA CTTTAC TCTGC TTTTTTCTTATGCTA TERM 1372 1040101 - 1040086 - R 75 -4.7 -4.84492 | opp_overlap 1040086, overlap 1040081 TTAACTACAATAAAA GCAGA CTTTAC TCTGC TTTTTTCTTATGCTA fld 1040477 - 1040109 - | flavodoxin TERM 1373 1040645 - 1040630 - R 71 -3.2 -5.10077 | AAATATCCTAAAAAA CTACCC CTTA GGACAG TTTTAAATTTTGCAA stu1184 1041009 - 1040737 - | hypothetical protein stu1185 1041740 - 1041021 - | proteinase TERM 1374 1041156 - 1041170 + g 71 -7.2 -3.95073 | overlap 1041146 CAATTCGTGCTCGGC CGTATT AAC AATACG TTTGTGGGTATAACC estA 1042642 - 1041860 - | esterase TERM 1375 1042037 - 1042027 - G 73 -5.4 -4.59773 | CTTGAGTGTCAAAAA GGAA ATC TTCC AGACCACACCAAGCA TERM 1376 1042692 - 1042667 - R 79 -10.5 -2.90075 | opp_overlap 1042672, overlap 1042672 CCTTTCTTAATGATA GAAAAGCTGGG ATAG CCCAGCTTTTT CTTTTTCAAAATAGT TERM 1377 1042687 - 1042672 - R 100 -10.4 -4.614 | opp_overlap 1042672, overlap 1042667 CTTAATGATAGAAAA GCTGGG ATAG CCCAGC TTTTTCTTTTTCAAA TERM 1378 1042672 - 1042687 + r 100 -10.4 -5.61881 | opp_overlap 1042672 1042667 CTTAATGATAGAAAA GCTGGG ATAG CCCAGC TTTTTCTTTTTCAAA stu1187 1044428 - 1042767 - | metallo-beta-lactamase superfamily protein TERM 1379 1044571 - 1044547 - R 95 -8.7 -5.55769 | opp_overlap 1044547 GGCCACAACAAAAAA GTTGCATACTC TTT AAGTATACAAC TTTTTGGCTTATTTT TERM 1380 1044547 - 1044571 + r 81 -5.8 -4.85195 | opp_overlap 1044547 GGCCACAACAAAAAA GTTGCATACT CTTTA AGTATACAAC TTTTTGGCTTATTTT stu1188 1045367 - 1044609 - | ABC transporter ATP binding protein stu1189 1046233 - 1045364 - | ABC transporter membrane-spanning protein stu1190 1047244 - 1046243 - | ABC transporter substrate binding protein TERM 1381 1047334 - 1047373 + r 100 -12.4 -5.52023 | opp_overlap 1047334 1047345, overlap 1047345 AAAAAAACTTTTAAA GAAGAAAAAAACCAGAAG ATAG CTTCTGGTTTTTTTCTCA TTTTTTCTTACTGAT TERM 1382 1047372 - 1047334 - R 100 -15.7 -3.71363 | gap 1, opp_overlap 1047334 1047345, overlap 1047345 AAAAAAACTTTTAAA GAAGAAAAAAACCAGAAG ATAG CTTCTGGTTTTTTTCT-C ATTTTTTCTTACTGA TERM 1383 1047362 - 1047345 - R 100 -9.9 -6.01369 | opp_overlap 1047334 1047345, overlap 1047334 TAAAGAAGAAAAAAA CCAGAAG ATAG CTTCTGG TTTTTTTCTCATTTT TERM 1384 1047345 - 1047362 + r 100 -9.9 -5.77632 | opp_overlap 1047345 1047334, overlap 1047334 TAAAGAAGAAAAAAA CCAGAAG ATAG CTTCTGG TTTTTTTCTCATTTT stu1191 1047602 - 1047381 - | hypothetical protein TERM 1385 1047736 - 1047707 - R 76 -7.9 -4.04206 | opp_overlap 1047705 1047707 GCATGGGTATACAAA TAGACCCCATAAC AAAT GCTGTGAGGTCTA TATTGATTGGAATCA stu1192 1048052 - 1047804 - | hypothetical protein TERM 1386 1047936 - 1047961 + gr 85 -10.5 -3.3539 | overlap 1047933 1047933 TGATTGTGGAGTTAT CTGTGACTCTG GAGT TGGAGTCACAG TATGTTTGTAGATGT TERM 1387 1048038 - 1048073 + gr 73 -7.6 -3.78087 | TCGGGATTTCTTTCT TCTCTTGTTCGCCATC TTCT GTTGGGGAACAAGAAA TTTCAGCTTTTGCTT stu1193 1048494 - 1048015 - | surface-associated protein cshA precursor, truncated stu1194 1048855 - 1048589 - | hypothetical protein stu1195 1049256 - 1049017 - | hypothetical protein TERM 1388 1050124 - 1050105 - R 100 -8.6 -5.81622 | opp_overlap 1050105 ATAAAACTAAAAAAA GAAGATCC TCAC GGACCTTC TTTATATTTAAGTAT TERM 1389 1050105 - 1050124 + r 74 -6.4 -4.35646 | opp_overlap 1050105 ATAAAACTAAAAAAA GAAGATCC TCAC GGACCTTC TTTATATTTAAGTAT TERM 1390 1050156 - 1050173 + r 71 -7.7 -3.6944 | opp_overlap 1050156, overlap 1050154 ACTTATATTATTTAA CTGTGCG GATA CGCATAG TATTTGTATTACCAG pyk 1051650 - 1050148 - | pyruvate kinase TERM 1391 1050536 - 1050565 + g 76 -3.5 -5.2204 | opp_overlap 1050536 1050534, overlap 1050544 GTTGATGAATTAAGA CGACCATACTCTT TAAG AAGAGTTTGAGCG TTTTTATTAATTGTA pfkA 1052787 - 1051720 - | 6-phosphofructokinase dnaE 1055942 - 1052832 - | DNA polymerase III DnaE TERM 1392 1054727 - 1054741 + g 81 -2.9 -5.54894 | opp_overlap 1054727 AGACAGTTGTCAAAG TATCT CGAAA AGATA TTTTTTTACTGAGTT TERM 1393 1055330 - 1055348 + g 77 -10.4 -3.41807 | opp_overlap 1055323, overlap 1055333 TGTTTAAAGCCTCTG GAAGCTTA CTA TAAGCTTC TTCCATTTCTTTGGC TERM 1394 1056073 - 1056055 - R 100 -13.2 -4.39287 | opp_overlap 1056055 TTAAGCATATTAAAA GCAGAACC AAG GGTTCTGC TTTCTTGAAGACATT TERM 1395 1056055 - 1056073 + r 100 -13.2 -4.15788 | opp_overlap 1056055 TTAAGCATATTAAAA GCAGAACC AAG GGTTCTGC TTTCTTGAAGACATT stu1199 1056880 - 1056095 - | hypothetical protein leuD 1057567 - 1056977 - | isopropylmalate isomerase small subunit leuC 1058971 - 1057577 - | isopropylmalate isomerase large subunit leuB 1060322 - 1059276 - | 3-isopropylmalate dehydrogenase leuA 1061936 - 1060326 - | 2-isopropylmalate synthase TERM 1396 1061789 - 1061807 + g 91 -6 -5.38326 | TTCCCCATTTTTCAA GTTGCTTT GCA ATAGCAAC TTTTTCTTTGATTGA TERM 1397 1061934 - 1061961 + g 82 -8.4 -4.13945 | opp_overlap 1061934 1061949, overlap 1061954 TAGTAGTAAAAAAAA CATCTCACTCGG AAAC CCAAGCGAGATG TTTTGAACTCCCGCT TERM 1398 1061961 - 1061934 - G 100 -12.8 -5.88471 | opp_overlap 1061934 1061954, overlap 1061949 TAGTAGTAAAAAAAA CATCTCACTCGG AAAC CCAAGCGAGATG TTTTGAACTCCCGCT TERM 1399 1061980 - 1061949 - R 100 -14.6 -3.57462 | gap 1, opp_overlap 1061934 1061954, overlap 1061934 CATCTCACTCGGAAA CCCAAGCGAGATGTT TTG AAC-TCCCGCTTGGG TAAACCAAACAGGAC TERM 1400 1062017 - 1061990 - R 73 -7 -4.05788 | opp_overlap 1061992, overlap 1061992 CTTGGGTAAACCAAA CAGGACTAATGC TTTT GCACTAGCCCTC ATTACGCAATAGCAA TERM 1401 1062015 - 1061992 - R 82 -9.6 -3.62354 | opp_overlap 1061992, overlap 1061990 TGGGTAAACCAAACA GGACTAATGC TTTT GCACTAGCCC TCATTACGCAATAGC TERM 1402 1062074 - 1062100 + r 71 -7.4 -3.70902 | GATTTATTTCCTTTC GATGTATCTTGT TTT ATATGATACATC TTTCAATCTCGAAAG TERM 1403 1062206 - 1062177 - R 83 -7.3 -4.83169 | opp_overlap 1062179 1062184 1062186, overlap 1062184 ATTTTTTCAGAAAAA CAAAAAAGCTGAC CAAA GTCAACTTTTCTA ATTGTTCTTAATATC TERM 1404 1062199 - 1062184 - R 93 -5.4 -5.98675 | opp_overlap 1062179 1062184 1062186, overlap 1062177 CAGAAAAACAAAAAA GCTGAC CAAA GTCAAC TTTTCTAATTGTTCT gpmA 1062927 - 1062235 - | phosphoglyceromutase TERM 1405 1062623 - 1062633 + g 84 -6.8 -4.86385 | TCACCAAATTGTTCA GCAG CTT CTGC TTTATTTTTACCAGT pyrDa 1063138 - 1064121 + | dihydroorotate dehydrogenase 1A TERM 1406 1064129 - 1064152 + T 82 -5.3 -5.30448 | opp_overlap 1064129 ACAGATAACCAAAAA GAGCTTGGA TTTTTT TCCAAACTC TTTTTATCTTTATTT TERM 1407 1064152 - 1064129 - T 88 -7.5 -4.9755 | opp_overlap 1064129 ACAGATAACCAAAAA GAGCTTGGA TTTTTT TCCAAACTC TTTTTATCTTTATTT stu1208 1064353 - 1064186 - | hypothetical protein TERM 1408 1064436 - 1064419 - R 100 -9.9 -4.61873 | TTGTATAAATCAAAA CCCCTAA AAGC TTAGGGG GATTAACATTATTTG hstH 1064720 - 1064445 - | histone-like DNA-binding protein stu1210 1065426 - 1064857 - | hypothetical protein stu1211 1066225 - 1065419 - | hypothetical protein TERM 1409 1066224 - 1066213 - G 73 -2.2 -5.18726 | TTGGTATAATAAAAA TGAG TAGC CCCA CAAATAATAGAAAAA TERM 1410 1066255 - 1066240 - R 72 -2.5 -5.23765 | overlap 1066247 1066250 CAAATAATAGAAAAA GCAAG AAGAAG CCTGC AAAGCTTCTAAGTAA TERM 1411 1066263 - 1066247 - R 73 -7.3 -4.0498 | overlap 1066240 1066250 TAGAAAAAGCAAGAA GAAGCCT GCA AAGCTTC TAAGTAATTCTGATT stu1212 1067123 - 1066287 - | hypothetical protein recN 1068864 - 1067194 - | DNA repair and genetic recombination protein stu1214 1069319 - 1068873 - | transcriptional repressor protein, putative stu1215 1070133 - 1069267 - | hemolysin, putative TERM 1412 1069572 - 1069584 + gr 71 -7.7 -3.53012 | TTTGTTCACGGCCTG CCTCA AAT TGAGG TTTCACAAGAGCAAC ispA 1070998 - 1070126 - | geranyltranstransferase, farnesyl diphosphate synthase xseB 1071213 - 1070998 - | exodeoxyribonuclease VII small subunit xseA 1072531 - 1071191 - | exodeoxyribonuclease VII large subunit TERM 1413 1072596 - 1072585 - R 70 -2.2 -5.28755 | AAAGACACTAAAAAA GCTC TGTA GAAC CATGATTCTCCAATA TERM 1414 1072683 - 1072666 - R 100 -9.9 -5.2422 | AATTATACCAAAAAA GACTGTC AAAA GACAGTC TCAACCACTATTGGC stu1219 1072965 - 1072720 - | hypothetical protein TERM 1415 1073295 - 1073309 + r 93 -8.6 -4.68506 | CCCTTTTTTCTTTTC CTCTTG TTC CAAGAG TTTTTGCACTTCCTT nth 1074257 - 1073598 - | endonuclease III, DNA repair dnaD 1074940 - 1074242 - | DNA replication protein dnaD metA 1075956 - 1075012 - | homoserine O-succinyltransferase TERM 1416 1076094 - 1076105 + r 78 -7.2 -4.37886 | opp_overlap 1076094 1076087 TAAAAGAGTTAAAAA GGCC CTGA GGCC TTTTGTAAAACATAG TERM 1417 1076105 - 1076094 - R 83 -7.2 -4.80396 | opp_overlap 1076094, overlap 1076087 TAAAAGAGTTAAAAA GGCC CTGA GGCC TTTTGTAAAACATAG apt 1076645 - 1076127 - | adenine phosphoribosyltransferase TERM 1418 1076345 - 1076363 + g 80 -6 -4.77036 | opp_overlap 1076345 CGGCATGCATGCAAA GAGTATCG ACA CCATACTC TTTTTCATAATCGAC recJ 1078970 - 1076760 - | single strand DNA-specific exonuclease TERM 1419 1077521 - 1077534 + g 78 -3.8 -5.20333 | CGGTAATATCATGTA GCCA AAAGAC TGGC TTTTTATTATCCATA TERM 1420 1078915 - 1078931 + g 82 -6.5 -4.95487 | opp_overlap 1078917, overlap 1078917 TTAGCAAGTTTAAAA AAGCCAG CAT CTGGCTC TTTTGTGTTTATTTT TERM 1421 1078929 - 1078917 - G 90 -9.1 -5.10029 | opp_overlap 1078917 1078915 AGCAAGTTTAAAAAA GCCAG CAT CTGGC TCTTTTGTGTTTATT TERM 1422 1078917 - 1078929 + g 83 -9.1 -4.04608 | opp_overlap 1078917, overlap 1078915 AGCAAGTTTAAAAAA GCCAG CAT CTGGC TCTTTTGTGTTTATT stu1225 1079750 - 1078983 - | short chain dehydrogenase/reductase family oxidoreductase elaC 1080679 - 1079750 - | ribonuclease Z TERM 1423 1080165 - 1080148 - G 79 -6.9 -4.58283 | TAATTTGTCCAAAAA GCGGACC AAAT GGTACGC CTGCTGCCTTAAGGG stu1227 1081351 - 1080710 - | hypothetical protein hflX 1082582 - 1081344 - | GTP-binding protein TERM 1424 1082673 - 1082695 + r 80 -9.2 -3.57161 | opp_overlap 1082674, overlap 1082674 TTTTTATAAAGAAAA ACAAGTTGGA TTG TCCAACTTGC TTCTAATTAGTGTTT TERM 1425 1082674 - 1082694 + r 86 -12.7 -2.73212 | opp_overlap 1082674, overlap 1082673 TTTTATAAAGAAAAA CAAGTTGGA TTG TCCAACTTG CTTCTAATTAGTGTT TERM 1426 1082694 - 1082674 - R 100 -12.7 -5.38054 | opp_overlap 1082674 1082673 TTTTATAAAGAAAAA CAAGTTGGA TTG TCCAACTTG CTTCTAATTAGTGTT rodA 1084156 - 1082702 - | cell division protein stu1230 1084845 - 1084306 - | hypothetical protein stu1231 1085148 - 1084942 - | hypothetical protein TERM 1427 1085240 - 1085219 - R 100 -10.9 -4.63218 | opp_overlap 1085216 1085214 1085219, overlap 1085189 1085188 TTTCCCTTAAGAAAA GACAGCCTC AACT GAAGCTGTC TGCTCTATATAATCA hisK 1085988 - 1085245 - | hypothetical protein stu1233 1086635 - 1085988 - | hypothetical protein stu1234 1087395 - 1086622 - | N-acetyl-glucosamine catabolism protein, putative stu1235 1088140 - 1087397 - | acyl-ACP thioesterase, putative TERM 1428 1087905 - 1087915 + g 71 -4 -4.93365 | overlap 1087900 GAAATGGCTTCCGTT GTAA TGG TTAC TTTTTCATTGTAGCG hemN 1089277 - 1088141 - | coproporphyrinogen III oxidase TERM 1429 1089159 - 1089182 + g 70 -8.8 -3.28873 | opp_overlap 1089159, overlap 1089157 1089156 CACTCACGAATCAAA GCCCGTAGGT AGTC ATCAACGGGC TGATTTTTAATAAAT TERM 1430 1089366 - 1089343 - R 100 -10.4 -5.08824 | opp_overlap 1089343 1089346 GTTTGACGCAAAAAA GAAGCCATCT CTCC AGATAGCTTC TTTACTTCATTTTGT TERM 1431 1089343 - 1089366 + r 81 -8.2 -4.08579 | opp_overlap 1089343, overlap 1089346 GTTTGACGCAAAAAA GAAGCCATCT CTCC AGATAGCTTC TTTACTTCATTTTGT stu1237 1089695 - 1089546 - | hypothetical protein stu1238 1089875 - 1090129 + | hypothetical protein TERM 1432 1090214 - 1090187 - T 100 -11.4 -5.26875 | opp_overlap 1090187 1090185 CTTTTAACCAAAAAA GCCTATCACTCC CACA GGAATGATAGAC TCTTGACTATTATTT stu1239 1090573 - 1090244 - | hypothetical protein stu1240 1091012 - 1090752 - | hypothetical protein stu1241 1091245 - 1091033 - | hypothetical protein TERM 1433 1091363 - 1091410 + r 79 -8.8 -3.74056 | opp_overlap 1091359 1091368 1091374, overlap 1091374 TCTCCTAACAATTCT TAATAGAAAAATCTATCACT AGTTTATA AGTGATAGATTTTCCAATTA TTTAAGTACTTCTTG TERM 1434 1091405 - 1091368 - R 83 -10.9 -3.07947 | opp_overlap 1091363 1091374, overlap 1091359 1091374 TAACAATTCTTAATA GAAAAATCTATCACT AGTTTATA AGTGATAGATTTTCC AATTATTTAAGTACT TERM 1435 1091374 - 1091399 + r 71 -6.3 -4.2573 | opp_overlap 1091368 1091374, overlap 1091363 TTCTTAATAGAAAAA TCTATCACT AGTTTATA AGTGATAGA TTTTCCAATTATTTA TERM 1436 1091399 - 1091374 - R 84 -6.3 -5.0916 | opp_overlap 1091374 1091363, overlap 1091368 TTCTTAATAGAAAAA TCTATCACT AGTTTATA AGTGATAGA TTTTCCAATTATTTA rmlB 1092454 - 1091408 - | dTDP-glucose-4,6-dehydratase TERM 1437 1092551 - 1092535 - R 73 -9.5 -2.80056 | opp_overlap 1092538, overlap 1092534 AGTACGGACGTAAAC GAACTTC TGC GAAGTTC CATGACTAAATCAAG rmlC 1093477 - 1092884 - | dTDP-4-keto-L-rhamnose reductase rmlA 1094346 - 1093477 - | glucose-1-phosphate thymidyl transferase TERM 1438 1093760 - 1093782 + g 88 -10.6 -4.13748 | overlap 1093761 TTAACATCAGTGATT TCAAGCTCTC CAC GAGGGCTTGG TTTGATGTTTTTAGC TERM 1439 1093761 - 1093781 + g 82 -11.9 -3.07164 | overlap 1093760 TAACATCAGTGATTT CAAGCTCTC CAC GAGGGCTTG GTTTGATGTTTTTAG TERM 1440 1094094 - 1094080 - G 84 -10 -3.96148 | opp_overlap 1094088 TTCGCCTATGATAAA GGCTTG AGC CAAGCC ATCTGGACTTGGTTG TERM 1441 1094483 - 1094500 + r 76 -2.7 -5.46629 | opp_overlap 1094483 1094486, overlap 1094463 1094486 AATCAAATGGAATAA GAATTTC GAAT GAAATCC TTTTTTTGCACTATT stu1245 1095681 - 1094578 - | oxidoreductase, DadA family protein/D-amino acid oxidase stu1246 1096056 - 1095736 - | hypothetical protein stu1247 1096369 - 1095827 - | hypothetical protein TERM 1442 1096495 - 1096475 - R 75 -4.7 -4.89477 | overlap 1096478 TCTTGAAGAAGAAAA CTATGGCTG AGC CAACAATAG TACATCCCCAGGTAA stu1248 1097366 - 1096578 - | hypothetical protein stu1249 1098042 - 1097356 - | hypothetical protein TERM 1443 1098132 - 1098088 - R 79 -4.3 -5.2422 | AATTATATCAAAAAA GGAGGTCGGTAAGAAACGCTT TTA ACACATTTCCTAACAACTTCC TTTTTGTTTATACTT stu1250 1098580 - 1098140 - | hypothetical protein stu1251 1099935 - 1098583 - | phospho-sugar mutase, putative stu1252 1101124 - 1100159 - | hypothetical protein stu1253 1101978 - 1101121 - | hypothetical protein TERM 1444 1102572 - 1102584 + G 79 -5.5 -4.93365 | ACTATTTTGGCTAAC GGGGA CAG TCCTC TTTTTAATTCTAAAG TERM 1445 1102913 - 1102929 + G 70 -8.7 -3.28712 | TGCTGCCGTTTCTGT CGCTGAA TTC TTCGGCG TTGTGCCAGAGCAAA stu1254 1102074 - 1103417 + | Mur ligase family protein TERM 1446 1103960 - 1103945 - g 83 -7.6 -4.77036 | TCCGATGATCAAAAA CCACTT GGTA AAGTGG TCTACGGTAATGGTA cobQ 1103417 - 1104205 + | cobyric acid synthase TERM 1447 1104223 - 1104241 + T 86 -5.3 -5.70829 | gap 1, opp_overlap 1104223 CTTTTAAACAAAAAA GTGAACCC TGGA GGGT-CAC TTTTTTTGTCGTATT TERM 1448 1104241 - 1104223 - T 86 -5.3 -5.63517 | gap 1, opp_overlap 1104223 CTTTTAAACAAAAAA GTGAACCC TGGA GGGT-CAC TTTTTTTGTCGTATT stu1256 1106811 - 1104256 - | hypothetical protein stu1257 1107527 - 1106808 - | hypothetical protein TERM 1449 1107154 - 1107134 - G 79 -8.3 -4.06148 | AATACTTTATATAAA CCAGACATC TTG AACGTCTGG TCAATCCTTTAAAAG TERM 1450 1107709 - 1107686 - R 73 -4.6 -5.00884 | overlap 1107692 ATTTTCTGCAAAAAA GAAAAAGCCT TTTC AGACTTCTCC TATTATTAATAAGTT TERM 1451 1107703 - 1107692 - R 78 -2.2 -5.75538 | overlap 1107686 TGCAAAAAAGAAAAA GCCT TTTC AGAC TTCTCCTATTATTAA stu1259 1109972 - 1108053 - | ABC transporter ATP-binding protein TERM 1452 1110014 - 1109996 - R 82 -5.3 -5.2422 | gap 1, opp_overlap 1109996, overlap 1109997 AATTATACCAAAAAA GCC-AAGC TCCT GCTTAGGC TTTCTTACTTTCTTC udk 1110644 - 1110009 - | uridine kinase deaD 1110742 - 1111824 + | ATP-dependent RNA helicase TERM 1453 1111870 - 1111827 - T 100 -14.9 -5.3104 | opp_overlap 1111837 TCACGAAAAATAAAA TATGACAAAAGCACTTCAG AATCAA CTGAAGTGCTTTTAACATA TACAAATTAAGCTTT TERM 1454 1111837 - 1111860 + T 100 -11.1 -4.16943 | opp_overlap 1111827 TAAAATATGACAAAA GCACTTCAG AATCAA CTGAAGTGC TTTTAACATATACAA TERM 1455 1112077 - 1112058 - T 95 -8.6 -4.9725 | opp_overlap 1112056 1112052 1112058 ATTCTTACAGAAAAA GAGCCTTA TAAC TAAGGCCC TCTTTACTTTTTATA gapN 1113546 - 1112113 - | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 1456 1113262 - 1113278 + g 76 -6.7 -4.41348 | CTCACCAATTGCAGA TTTCAAA CCT TTTGAAA TTTCTTTAGAAAGAA TERM 1457 1113755 - 1113736 - R 87 -6.4 -5.4251 | opp_overlap 1113728 CTTAGATATAAAAAA GTGAAAGC TCAA GCCTCCAC TTTTTTGATTAATCC ptsI 1115497 - 1113764 - | phosphoenolpyruvate:sugar phosphotransferase system enzyme I TERM 1458 1115374 - 1115335 - G 71 -6.5 -4.28188 | gap 2, opp_overlap 1115335 CACGGATAACAGAAA GCTCGTCTTGCGACGCCGC TAGA GCAGCATCT-A-GACGAGC CTCTTCTGCACTTAT ptsH 1115765 - 1115502 - | phosphocarrier protein HPr icd 1117202 - 1116027 - | isocitrate dehydrogenase gltA 1118341 - 1117217 - | methylcitrate synthase citB 1121006 - 1118343 - | aconitate hydratase TERM 1459 1121407 - 1121397 - g 85 -2.6 -5.77632 | overlap 1121389 AAAATGACAAAAAAA TTTT TGG AAAA GGAAGGTGCTGATTT TERM 1460 1121470 - 1121458 - g 76 -2 -5.4111 | AACAACCAGAAAAAA TTGA TTACG TCAA AAGCCTAGGCTTTAC nrdH 1121337 - 1121561 + | glutaredoxin TERM 1461 1123364 - 1123349 - g 86 -7.6 -5.03145 | GAACTCGTTAAAAAA GATGGT CTCT ACCATC AAAACCGTTTGGCTG TERM 1462 1123392 - 1123369 - g 73 -6.7 -4.30576 | opp_overlap 1123380 TCTCTACCATCAAAA CCGTTTGGC TGTTGC GCCAAATGG CTCAATCTCTTACAT nrdE 1121648 - 1123807 + | ribonucleotide-diphosphate reductase subunit alpha TERM 1463 1123865 - 1123878 + F 90 -8.1 -5.1675 | opp_overlap 1123864 AAAAGCATAAAATGG GTCGG TTCG CCGAC TTTTTTAATAGATAA TERM 1464 1124426 - 1124416 - g 85 -5.4 -5.26316 | opp_overlap 1124416 GCACTTCAGAAAAAA GTTG CTT CAAC TTATCTTGAAACCTT nrdF 1123966 - 1124928 + | ribonucleotide-diphosphate reductase subunit beta TERM 1465 1124951 - 1124926 - f 78 -6.9 -4.29396 | opp_overlap 1124931, overlap 1124931 AACTACGGACTAAAA TAAAAGCCAGC CTAG GCTAGCTTTAA TGGCTCTATAATTTC TERM 1466 1124946 - 1124931 - f 84 -6.8 -5.13722 | opp_overlap 1124931, overlap 1124926 CGGACTAAAATAAAA GCCAGC CTAG GCTAGC TTTAATGGCTCTATA TERM 1467 1124954 - 1125001 + F 100 -14.5 -4.65895 | opp_overlap 1124993 AGGCTAGCTTTAATG GCTCTATAATTTCTGTAGTGG GTAAAA CTACTGTAGAGATTATAGAGC TTTTTGAATGCAGAC stu1272 1125244 - 1125450 + | truncated IS1193 transposase stu1273 1125594 - 1126019 + | hypothetical protein TERM 1468 1126462 - 1126433 - g 93 -7.2 -5.50774 | overlap 1126435 TACAACAAAGAAAAA GTGCTAGAACTG AGGAAA CAGTTCTAACTC CAAACTAAAAAAATT stu1274 1126073 - 1126459 + | hypothetical protein TERM 1469 1126565 - 1126536 - T 75 -10.1 -2.71712 | gap 1, opp_overlap 1126536, overlap 1126535 1126538 TGTCTTTTTTCAAAT CATGACGCCCCCGT TAG ACAGGAG-GTCATG TTTTGTCTCGCACCT TERM 1470 1126536 - 1126565 + T 71 -5.7 -4.52857 | gap 1, opp_overlap 1126535 1126536 1126538 TGTCTTTTTTCAAAT CATGACGCCCCCGT TAG ACAGGAG-GTCATG TTTTGTCTCGCACCT TERM 1471 1126640 - 1126618 - T 100 -9.2 -5.24796 | opp_overlap 1126622 GTCACATAATAAAAA GAAAGGACGA AAT TTGTCCTTTC TCGATCTTAGCTTTT TERM 1472 1126722 - 1126693 - T 78 -7.9 -4.20118 | opp_overlap 1126697 1126699, overlap 1126691 1126699 AAGAGCCAAAAAATA GGAAAAGCCATCC AAAT GGATAGCTCTTTC ATTACCTAGAAAGTC TERM 1473 1126716 - 1126699 - T 82 -7.7 -4.64361 | opp_overlap 1126697 1126699, overlap 1126693 1126691 CAAAAAATAGGAAAA GCCATCC AAAT GGATAGC TCTTTCATTACCTAG stu1275 1127692 - 1126724 - | hypothetical protein stu1276 1128218 - 1127889 - | hypothetical protein TERM 1474 1128226 - 1128237 + r 77 -5.8 -4.75309 | opp_overlap 1128226, overlap 1128221 CCCTCCATAGAAAAA GACC TTAC GGTC TTTTCTTAACTTTGA TERM 1475 1128237 - 1128226 - R 81 -5.8 -4.96848 | opp_overlap 1128226 1128221 CCCTCCATAGAAAAA GACC TTAC GGTC TTTTCTTAACTTTGA stu1277 1128620 - 1128243 - | sortase, truncated stu1278 1129004 - 1128633 - | sortase, truncated gyrA 1131472 - 1129037 - | DNA gyrase subunit A ldh 1131691 - 1132677 + | L-lactate dehydrogenase TERM 1476 1132714 - 1132699 - T 73 -4.6 -4.90778 | opp_overlap 1132700, overlap 1132694 1132700 TTTAGTTAAATAAAA GCCTCC AGTT GGAGGT TTTTTAGTATTTTAA TERM 1477 1132713 - 1132700 - T 73 -8.1 -3.53744 | opp_overlap 1132700, overlap 1132699 1132694 TTAGTTAAATAAAAG CCTCC AGTT GGAGG TTTTTTAGTATTTTA TERM 1478 1132700 - 1132713 + T 90 -8.1 -5.36314 | opp_overlap 1132700 1132699 1132694 TTAGTTAAATAAAAG CCTCC AGTT GGAGG TTTTTTAGTATTTTA TERM 1479 1132762 - 1132739 - T 100 -12.6 -5.61881 | opp_overlap 1132739 TTTTAAAAAGAAAAA CAGCTAATTC ATAT GAATTAGCTG TTTAATATTATTCAG TERM 1480 1132739 - 1132762 + T 100 -12.6 -4.01135 | opp_overlap 1132739 TTTTAAAAAGAAAAA CAGCTAATTC ATAT GAATTAGCTG TTTAATATTATTCAG nox 1134155 - 1132770 - | NADH oxidase (H2O-forming) TERM 1481 1134426 - 1134408 - R 74 -5.3 -4.65895 | overlap 1134410 TTGCCCACTCAAAAA TAGAGTG AGTGA CACTCCA ACTCATTGAGAAGAT stu1282 1135997 - 1134459 - | ABC transporter ATP-binding protein TERM 1482 1136007 - 1136028 + r 85 -8.8 -4.21141 | opp_overlap 1136005 AGACATAACATATCT GGGCTAAA ACAGTC TTTAGCCC TTTCCTTTCTTGACA stu1283 1136559 - 1136068 - | hypothetical protein TERM 1483 1136128 - 1136114 - G 93 -7.1 -5.49568 | AATCGAAAAGAAAAA GCAGG ACCCG CCTGC TCAATCTTTAGTCTT pdxK 1137517 - 1136696 - | pyridoxamine kinase TERM 1484 1137180 - 1137155 - G 91 -13.5 -2.88249 | CATAGCTTCTACATA GTCTCTATCAA AACC TTGATAGAGAC GGCCATTATCACCCA stu1285 1138027 - 1137518 - | hypothetical protein TERM 1485 1138158 - 1138137 - R 89 -7.3 -5.26316 | TGAGGCTATAAAAAA TCACCACAC ATCC ATGTGGCGA TAAAGCTTATTGAGA stu1286 1138695 - 1138165 - | hypothetical protein stu1287 1138853 - 1139191 + | transcriptional regulator, putative, truncated stu1288 1139318 - 1140118 + | transcriptional regulator, putative, truncated TERM 1486 1140155 - 1140139 - T 83 -5.1 -5.51046 | opp_overlap 1140133 1140139 CAAACATACAAAAAA GCCATCA AAG CAATGGC TTTTTATTATTTAGT TERM 1487 1140139 - 1140155 + T 79 -3.7 -5.39905 | opp_overlap 1140139, overlap 1140133 CAAACATACAAAAAA GCCAT CAAAGCA ATGGC TTTTTATTATTTAGT stu1289 1140500 - 1140162 - | hypothetical protein stu1290 1140896 - 1140591 - | hypothetical protein TERM 1488 1141196 - 1141229 + r 84 -11.3 -3.08283 | opp_overlap 1141204, overlap 1141204 CCTTATATCTACTAT CTTAAAAATCCATCT TATC AGATGGATTTTTAAC TATTAACGTACTTCT TERM 1489 1141221 - 1141204 - R 89 -8.5 -4.63527 | opp_overlap 1141204 1141196 CTACTATCTTAAAAA TCCATCT TATC AGATGGA TTTTTAACTATTAAC TERM 1490 1141204 - 1141221 + r 93 -8.5 -4.74706 | opp_overlap 1141204, overlap 1141196 CTACTATCTTAAAAA TCCATCT TATC AGATGGA TTTTTAACTATTAAC pheT 1143682 - 1141232 - | phenylalanyl-tRNA synthetase subunit beta TERM 1491 1143557 - 1143567 + g 81 -5.4 -5.01732 | TTCCACTTCAATACC TGTC GTC GACA TTTTTTCAGCAAGTT stu1293 1144459 - 1143941 - | transcriptional regulator pheS 1145519 - 1144476 - | phenylalanyl-tRNA synthetase subunit alpha TERM 1492 1145601 - 1145565 - R 95 -6.5 -5.95539 | TCGCAAACAAAAAAA CACACGCCAAAACTCCA ACC CGGAGCGTTGACACGCG GTACCATCCGTTTTT TERM 1493 1146033 - 1146046 + r 87 -6.7 -5.42259 | TGTTAGAGCATTTTA CGCAA TCGA TTGCG TTTTTTTGAAAGTCA TERM 1494 1146051 - 1146068 + r 84 -5.7 -5.42862 | opp_overlap 1146062 AATCGATTGCGTTTT TTTGAAA GTCA TTTCAAA TTTTTTTGAAACTAT TERM 1495 1146115 - 1146091 - R 86 -5.2 -5.75599 | gap 1, opp_overlap 1146091 GAAACTATAAAAAAA GATAG-TGATA AAGC TATCAACTATC TTTCATGAAATTATA smc 1149672 - 1146139 - | chromosome segregation SMC protein TERM 1496 1149432 - 1149406 - G 73 -8 -3.87641 | opp_overlap 1149406 AACACCTGCGATAAA GCCGTCACTGTT ATC AAGAGTGACCGC TACTTCCGCGTAGTT rnc 1150388 - 1149675 - | ribonuclease III TERM 1497 1150438 - 1150414 - R 86 -5.7 -5.59357 | opp_overlap 1150414 ATTATATCAAAAAAA GCAGATTTTCA TGA TGGAAAACTGC TTTTAGTAGCTATAT TERM 1498 1150414 - 1150438 + r 81 -7.9 -4.3014 | opp_overlap 1150414 ATTATATCAAAAAAA GCAGATTTTCA TGA TGGAAAACTGC TTTTAGTAGCTATAT TERM 1499 1150509 - 1150493 - R 77 -5.1 -5.16237 | AATTGCACTAAAAAA GCTAAGC AAG GCTCAAC TTCATTTTCTTAATA dapA 1151490 - 1150519 - | dihydrodipicolinate synthase TERM 1500 1151607 - 1151588 - R 80 -2.8 -5.72616 | ATTTACACAAAAAAA CAGAGAGA TATG TCTACCTG TTTCATTGCAATCAG TERM 1501 1151736 - 1151794 + r 70 -7.2 -3.77241 | opp_overlap 1151756, overlap 1151738 TTCCTAATCAACTGT TCGGGGGCGAAACTACGAAATC-A-AACTC TTC GAGTTATTGATTTC-T-GTTTCGCTCCCTA TTTCAATTCAAATTT TERM 1502 1151738 - 1151792 + r 81 -9.8 -3.46336 | opp_overlap 1151756, overlap 1151736 CCTAATCAACTGTTC GGGGGCGAAACTACGAAATC-A-AACTC TTC GAGTTATTGATTTC-T-GTTTCGCTCCC TATTTCAATTCAAAT asd 1152868 - 1151792 - | aspartate-semialdehyde dehydrogenase TERM 1503 1152678 - 1152664 - G 70 -2.8 -5.06451 | CACCAGCTGAAAAAA GTGCAA TGT CTACAC CTTCAAATGCGTCTT TERM 1504 1152995 - 1152974 - R 95 -8.7 -5.21506 | AGAATAACAGAAAAA TCCCCTACC AAAC GGCAAGGGA TAAGAGGCATCTTTC TERM 1505 1153103 - 1153090 - R 81 -8.1 -4.13767 | overlap 1153099 CTCCTCAGCGCAAAA GGCTC TAAA GAGCC AATCGACTCATCGCA alkD 1153637 - 1153158 - | DNA alkylation repair protein TERM 1506 1154019 - 1154032 + r 71 -6.7 -4.18018 | GTATTTTTCTGACAG GACCA TCTA TGGTC TTTTGCATCCAGACG stu1301 1154580 - 1153999 - | phosphinothricin acetyltransferase, putative TERM 1507 1154550 - 1154597 + g 100 -18.1 -4.70659 | opp_overlap 1154549 1154548 1154589 TCTTTATTTTAAACG GCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGC TTTTTAAGTATACAC stu1302 1154804 - 1155010 + | truncated IS1193 transposase stu1303 1155128 - 1155364 + | truncated IS1193 transposase TERM 1508 1155464 - 1155450 - g 90 -7.1 -5.30686 | opp_overlap 1155450 AACATGCATAAAAAA GGACC TATCC GGTCC TCTCTAGATGTTAGC stu1304 1155357 - 1155524 + | truncated IS1193 transposase TERM 1509 1155544 - 1155530 - T 77 -3.4 -5.49809 | opp_overlap 1155530, overlap 1155532 TAAACTTTAAAAAAA GGGGGC TCA ACCCTC TTCTTACAAAAATTG cls 1157014 - 1155563 - | cardiolipin synthetase uvrC 1158989 - 1157202 - | excinuclease ABC subunit C TERM 1510 1159024 - 1159011 - R 90 -3.8 -5.80364 | ATTGTAACAAAAAAA GAGC AGAAAA GCTC TTCGAAATCATGGCT stu1307 1159744 - 1159049 - | HAD superfamily hydrolase bioY2 1160071 - 1160505 + | biotin synthase TERM 1511 1160515 - 1160562 + T 74 -2.1 -5.56673 | gap 1, opp_overlap 1160513 AAATAGCTAAAAATA CCACTCAGTCTGAAGGTATTTC GTAAA GAAACGG-TTCAGGTTGGGTGG TTTTTTCTTGTCCAT proWX 1161429 - 1160740 - | choline/proline/glycine betaine ABC uptake transporter membrane-spanning protein proV 1162126 - 1161371 - | choline/proline/glycine betaine ABC uptake transporter ATP-binding protein proWY 1163055 - 1162138 - | choline/proline/glycine betaine ABC uptake transporter substrate binding protein proWZ 1163711 - 1163052 - | choline/proline/glycine betaine ABC uptake transporter membrane-spanning protein TERM 1512 1163515 - 1163501 - G 75 -2.8 -5.18297 | overlap 1163502 TAAGAATAAACAAAA GTCCTA AAC TAGGAA TAACTCTCAAGCCCT hutH 1165264 - 1163768 - | histidine ammonia-lyase stu1314 1166390 - 1165287 - | hypothetical protein hutU 1168041 - 1166407 - | urocanate hydratase TERM 1513 1168239 - 1168201 - H 100 -10.6 -5.49568 | opp_overlap 1168200 AATTGAAAACAAAAA TACCTCAATAATTAGA AAAAAAG TCCAATCATTGAGGTA CGATTTATTATCTTA TERM 1514 1168340 - 1168327 - H 74 -2.3 -5.47218 | overlap 1168328 TTCTACCCAAAAAAA CGACC CATA GGCCA TCCTCTCTGATTTAT sdaB 1168480 - 1169193 + | L-serine dehydratase beta subunit TERM 1515 1169558 - 1169578 + G 72 -9 -3.43217 | overlap 1169549 1169548 1169546 CTCCAACGGCTGGTT CAGCAGGT TGTTT GCCTGCTG TTCTAACTGTTGCTA TERM 1516 1169764 - 1169774 + G 71 -6.8 -4.11216 | ATTACAATGGCTGCT GGTG GAA CACC TTTTCAAGCTAGCCA sdaA 1169206 - 1170075 + | L-serine dehydratase alpha subunit TERM 1517 1170147 - 1170119 - T 77 -6.1 -4.67635 | opp_overlap 1170120 1170125 1170144, overlap 1170120 TTCAAAACTATAAAA GGCAAACATCT ACTATTA AGATGTTTGCT TTCATTCTGAGATCA TERM 1518 1170120 - 1170146 + T 87 -9.6 -4.00124 | opp_overlap 1170119 1170120, overlap 1170125 1170144 TCAAAACTATAAAAG GCAAACATCT ACTATTA AGATGTTTGC TTTCATTCTGAGATC TERM 1519 1170146 - 1170120 - T 81 -9.6 -3.39497 | opp_overlap 1170120 1170125 1170144, overlap 1170119 TCAAAACTATAAAAG GCAAACATCT ACTATTA AGATGTTTGC TTTCATTCTGAGATC TERM 1520 1170688 - 1170725 + T 100 -12.3 -5.00196 | gap 1, opp_overlap 1170692 1170695, overlap 1170692 AAATACAATAACTAT CAAAGAAGCATCTGAAGT CAG ACT-CAGATGCTTCTTTA TTTTATTATTTCAAC TERM 1521 1170692 - 1170721 + T 100 -13.1 -4.98461 | gap 1, opp_overlap 1170692 1170695, overlap 1170688 ACAATAACTATCAAA GAAGCATCTGAAGT CAG ACT-CAGATGCTTC TTTATTTTATTATTT TERM 1522 1170721 - 1170692 - T 95 -13.1 -3.89734 | gap 1, opp_overlap 1170688 1170692, overlap 1170695 ACAATAACTATCAAA GAAGCATCTGAAGT CAG ACT-CAGATGCTTC TTTATTTTATTATTT TERM 1523 1170718 - 1170695 - T 82 -9 -4.05529 | gap 1, opp_overlap 1170692 1170688, overlap 1170692 ATAACTATCAAAGAA GCATCTGAAGT CAG ACT-CAGATGC TTCTTTATTTTATTA stu1318 1171367 - 1170798 - | hypothetical protein stu1319 1172294 - 1171503 - | hypothetical protein stu1320 1172572 - 1172291 - | hypothetical protein TERM 1524 1172398 - 1172381 - GR 78 -2.5 -5.52909 | overlap 1172383 TAAGAGCCAAAAAAA CTGGAGC AAAA GCGCCTG AAGCATCTGACTGGC stu1321 1173114 - 1172542 - | hypothetical protein stu1322 1173518 - 1173300 - | ABC transporter ATP binding protein, truncated stu1323 1173663 - 1173496 - | ABC transporter ATP binding protein, truncated stu1324 1173933 - 1173679 - | ABC transporter ATP binding protein, truncated TERM 1525 1173956 - 1173940 - R 75 -7.3 -4.18018 | opp_overlap 1173940 1173953 CTTTGGCACCTAAAA GGTCAAA TTC CTTGACC TCTTCAAAGGGTCTA TERM 1526 1174252 - 1174233 - R 100 -10.8 -6.04324 | TGAAAAAACAAAAAA GTCTGTCT AAAA AGACAGAC TCAGAATGTAGGATA rr06 1175077 - 1174475 - | response regulator (homolog to RR11 Spn) hk06 1176174 - 1175074 - | sensor histidine kinase (homolog to HK11 Spn) TERM 1527 1175945 - 1175917 - G 73 -2.3 -5.21683 | ATTGAAAAAAACAAA CCACATCATGCCA CCT TGGAAGGAAATGG ACATAAAGATAATGT stu1327 1176898 - 1176161 - | ABC transporter membrane-spanning protein stu1328 1177776 - 1176895 - | ABC transporter ATP binding protein TERM 1528 1177690 - 1177673 - G 73 -7.7 -3.90112 | TTTGGCCCAATTAAA GCAAGAC AGTC GCCTTGC CCCACCTCAAAGCTA stu1329 1178168 - 1177959 - | hypothetical protein TERM 1529 1178307 - 1178291 - R 87 -6.5 -5.47218 | opp_overlap 1178291 1178286 TGTGACGTAAAAAAA GCCAACC TAA GGTCAGC TTTTCATTTATCTTA stu1330 1179258 - 1178320 - | bile acid:Na+ symporter (BASS) family protein TERM 1530 1178563 - 1178549 - G 73 -8.6 -3.63078 | AAACCAAGGACATAA CCACAA AGA TTGTGG AGCATGACAACCGGA stu1331 1179853 - 1179404 - | cytidine/deoxycytidylate deaminase family protein, putative stu1332 1180242 - 1180021 - | hypothetical protein TERM 1531 1180324 - 1180291 - R 100 -9.7 -4.52047 | opp_overlap 1180297 1180323, overlap 1180295 TATTATAGCATAAAA GAAATAGAGCCTAGC TTGA ACTAGACTCTATGTC AGTTACATTGATACT TERM 1532 1180320 - 1180295 - R 100 -9.1 -4.81357 | opp_overlap 1180297, overlap 1180291 ATAGCATAAAAGAAA TAGAGCCTAGC TTGA ACTAGACTCTA TGTCAGTTACATTGA stu1333 1182327 - 1180327 - | peptide-4 ABC transporter substrate binding/membrane-spanning protein stu1334 1183087 - 1182329 - | peptide-4 ABC transporter ATP binding protein TERM 1533 1182460 - 1182448 - G 72 -3.3 -5.09762 | CCTTAATAAACAAAA CACGC TGC GCACG ACTAGCGGCCGCTGT TERM 1534 1182835 - 1182851 + g 77 -6.5 -4.50218 | overlap 1182831 CTAATCTTTCACGAC GGAAGCT AGA AGCATCC TTGTTTTTGATGGTT hk07 1184206 - 1183232 - | sensor histidine kinase (homolog to HK01Spn & Sth) rr07 1184876 - 1184196 - | response regulator (homolog to RR01Spn & Sth) TERM 1535 1185227 - 1185211 - H 71 -7.9 -3.59979 | opp_overlap 1185211 TTTTGTGATTTTAAA GGCTTGC TTT GCAGGCC TTTTTTATATTATTC TERM 1536 1185211 - 1185227 + H 100 -10.1 -5.55695 | opp_overlap 1185211 TTTTGTGATTTTAAA GGCTTGC TTT GCAGGCC TTTTTTATATTATTC stu1337 1185428 - 1185565 + | xanthine phosphoribosyltransferase, truncated stu1338 1185543 - 1185908 + | xanthine phosphoribosyltransferase stu1339 1185997 - 1186467 + | hypothetical protein stu1340 1186473 - 1187177 + | hypothetical protein TERM 1537 1187186 - 1187209 + F 82 -7.5 -4.46926 | opp_overlap 1187180 1187186, overlap 1187208 AAAATAACACAAGAA CACCTGAGT CGCTTT ACTTAGGTG TTTTATCATGCAATA norM 1187305 - 1188654 + | MATE family drug:Na+ antiporter TERM 1538 1188665 - 1188682 + T 73 -4.1 -5.00895 | opp_overlap 1188666, overlap 1188666 ATTAATATACCTTAA ACAGTCT AGTT AGACTGC TTTTTCTCTGCTCAA TERM 1539 1188681 - 1188666 - T 71 -7.6 -3.66883 | opp_overlap 1188665 1188666 TTAATATACCTTAAA CAGTCT AGTT AGACTG CTTTTTCTCTGCTCA TERM 1540 1188666 - 1188681 + T 71 -7.6 -3.59814 | opp_overlap 1188666, overlap 1188665 TTAATATACCTTAAA CAGTCT AGTT AGACTG CTTTTTCTCTGCTCA TERM 1541 1188875 - 1188861 - T 70 -4.2 -4.74706 | opp_overlap 1188874 TTTAATATTGAAAAA GGTCAA TTT TTGTCC TGAATGGTTAGGTGA TERM 1542 1188969 - 1188942 - T 75 -7.1 -4.2349 | gap 1, opp_overlap 1188937 1188942 CTTTTACATGCAAAA GAGGTTGGTAGC AAGGG ACT-CCAACCTC TTTAGTTATGACATG TERM 1543 1189042 - 1189056 + T 74 -5.6 -4.70659 | opp_overlap 1189042 TACTTGGTCAAGTAA GTAGGC ATA GCCTTC TTTTTCCATATCAGC msrA1 1190043 - 1189021 - | bifunctional methionine sulfoxide reductase A/B protein TERM 1544 1190131 - 1190165 + r 100 -17.2 -3.68302 | opp_overlap 1190124 TAAAATATTAGGCGA CGGCCTTGTTCCTCAT TTC AAGAGGGGCAAGGCCG TTATTGCGCTCTTGA tnpSth1 1190992 - 1190123 - | IS3 familytransposase orf2 tnpSth1 1191747 - 1191007 - | IS3 familytransposase orf1 TERM 1545 1191758 - 1191701 - G 79 -10.1 -3.52874 | opp_overlap 1191701 1191713 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCAATTGTGAT TERM 1546 1191701 - 1191758 + g 84 -12.3 -2.96979 | opp_overlap 1191701, overlap 1191713 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCAATTGTGAT brnQ 1193114 - 1191786 - | branched chain amino acid:Na+ symporter TERM 1547 1192028 - 1192054 + g 75 -10.4 -3.05816 | opp_overlap 1192028 1192040, overlap 1192034 CAAACTTATTAGCAA TTACAATCATAA CAA TTGTGATTGTAA TTGGGTAAAGAATCA TERM 1548 1193007 - 1192990 - G 70 -3.3 -4.87592 | CCAGATAGAACAAAA CCGGCAA TAGC TAGCCAG AAATGACCTCCAGAT TERM 1549 1193165 - 1193139 - R 77 -5.1 -5.13343 | opp_overlap 1193142, overlap 1193142 1193144 CAATCTAAAACAAAA CATGACGTTTC AAAAG GAAACGGCTTG TTCATTAATAATTTT TERM 1550 1193288 - 1193313 + r 86 -10.5 -3.5774 | opp_overlap 1193288 CATTGTACGAAAAAA CGAGACAAGAT TCTC ATCTCGTCTCG TTTAACGACTTAAAT TERM 1551 1193313 - 1193288 - R 100 -12.7 -5.15634 | opp_overlap 1193288 CATTGTACGAAAAAA CGAGACAAGAT TCTC ATCTCGTCTCG TTTAACGACTTAAAT stu1358 1193714 - 1193328 - | mannose-6-phosphate isomerase, truncated stu1359 1194027 - 1193689 - | mannose-6-phosphate isomerase, truncated TERM 1552 1194009 - 1193997 - GH 73 -7.7 -3.76125 | overlap 1194005 GGACCTGAACTGAAA GCCAA TCA TTGGC ATCCAAAATCTTCGT stu1360 1194172 - 1194366 + | hypothetical protein TERM 1553 1194376 - 1194407 + T 95 -5.8 -6.12458 | opp_overlap 1194369 AAATAAGACAAAAAA GAAGTTTTCAAGCC ATTT GGCAAGGGAACTTC TTTTTTATTTTTTTC TERM 1554 1194861 - 1194842 - T 80 -5 -5.38497 | ACTTAAAGTAAAAAA GTCCCCAA AATA TTGAGAAC TTTCAATCTCTAGGA TERM 1555 1195227 - 1195204 - T 88 -7.5 -4.93696 | gap 1, opp_overlap 1195204 TTCAAATATCAAAAA TGGTAG-GCC AAAAG GGCTCTACCA TTCTCATCTTAATAC TERM 1556 1195204 - 1195227 + T 71 -7.5 -3.53531 | gap 1, opp_overlap 1195204 TTCAAATATCAAAAA TGGTAG-GCC AAAAG GGCTCTACCA TTCTCATCTTAATAC stu1361 1196621 - 1195236 - | amino acid transporter (AAT) family protein TERM 1557 1195994 - 1195979 - G 71 -7.6 -3.96148 | TCTTCCCACCATAAA TTTGGC CGAA GCCAAA TGGTGCAAAGTTAGC TERM 1558 1196969 - 1196946 - R 86 -5.4 -5.74122 | overlap 1196938 TAGGATACAAAAAAA TAACAAGATT TCTC AATCCTGCTA GTCTTTTGTCTTATC stu1363 1197649 - 1197047 - | hypothetical protein stu1364 1197954 - 1197829 - | hypothetical protein stu1365 1198608 - 1198102 - | hypothetical protein TERM 1559 1198754 - 1198732 - R 93 -7.1 -5.68023 | opp_overlap 1198732 CTAGAATCAAAAAAA GAAACCGAA TAATT TTCGATTTC TTATCATTTAAGATC stu1366 1199225 - 1198776 - | Rrf2 family protein stu1367 1200270 - 1199407 - | hypothetical protein celB 1201549 - 1200257 - | cellobiose PTS system component IIC TERM 1560 1201097 - 1201084 - G 84 -6.7 -4.87318 | TCGAAAAGCGAAAAA TCTGG CCAA CCAGA TACCCCACAAATATA TERM 1561 1201725 - 1201699 - R 100 -12.4 -5.80817 | TTTAATACAAAAAAA CATGAGTCTCCA CTT TTGAGACTCATG GCCGATTATTTATTA stu1369 1202391 - 1201738 - | NAD(P)H nitroreductase, putative stu1370 1203002 - 1202463 - | hypothetical protein stu1371 1204112 - 1203210 - | aldo/keto reductase family oxidoreductase stu1373 1204742 - 1204185 - | UDP-glucose 4-epimerase, truncated sthII 1209504 - 1205092 - | type II restriction-modification system restriction subunit TERM 1562 1205813 - 1205827 + g 70 -3.6 -4.93877 | TTCTCAGAATAAATA TATTCA AAT TGAGTA TTTTCTTTACTGAAA TERM 1563 1206990 - 1207011 + g 79 -5.1 -5.05606 | gap 1 CCATTGCCTCTTTTT CCTCTTG-GC TAC GCTCACGAGG TTTCTTTTTCTTAGC TERM 1564 1209498 - 1209488 - G 74 -4 -5.03314 | TCTACTTTTAAAAAA TCAA AAT TTGA TGCCATAATTCCTTA llaBIIM 1210185 - 1209511 - | type II restriction-modification system modification subunit TERM 1565 1210308 - 1210282 - H 100 -12.4 -4.93696 | opp_overlap 1210282 GCTAAACAGTAAAAA TGGTCGCCAACA GTT TGTTGACAACCA TTTTTCTTTCTATTT TERM 1566 1210282 - 1210308 + H 93 -8 -5.48623 | opp_overlap 1210282 GCTAAACAGTAAAAA TGGTCGCCAACA GTT TGTTGACAACCA TTTTTCTTTCTATTT stu1377 1210446 - 1211930 + | hypothetical protein TERM 1567 1212031 - 1212011 - T 88 -6.2 -5.72622 | gap 1, opp_overlap 1212012, overlap 1212012 TTGATAAAGAAAAAA GGGAAACTC TATC GAGTT-CCC TTTTTGATAACTAAT TERM 1568 1212012 - 1212031 + T 80 -6.4 -4.75372 | opp_overlap 1212011 1212012 TGATAAAGAAAAAAG GGAAACTC TATC GAGTTCCC TTTTTGATAACTAAT TERM 1569 1212031 - 1212012 - T 82 -8.6 -4.01946 | opp_overlap 1212012, overlap 1212011 TGATAAAGAAAAAAG GGAAACTC TATC GAGTTCCC TTTTTGATAACTAAT stu1378 1212494 - 1212150 - | hypothetical protein TERM 1570 1212850 - 1212824 - g 73 -9.4 -3.14683 | ACATCTGGTTAGCAA CGGGCATGACAA ACT TCGTCACTCCCG GTCTAGCTTTAACAA stu1379 1212754 - 1213017 + | hypothetical protein stu1380 1213478 - 1213203 - | response regulator (homolog to RR08 Spn) uncoupled, truncated stu1381 1213886 - 1213524 - | response regulator (homolog to RR08 Spn) uncoupled, truncated stu1382 1214421 - 1213966 - | cell wall surface anchor family protein stu1383 1214459 - 1214677 + | hypothetical protein TERM 1571 1214690 - 1214717 + T 93 -7.1 -5.60864 | opp_overlap 1214690 TAATCTAGTTAAAAA GCAACAACC ACATAATATA GGTTGTTGC TTTTTTTAGTATATG TERM 1572 1214717 - 1214690 - T 93 -8.6 -4.68424 | gap 1, opp_overlap 1214690 TAATCTAGTTAAAAA GCAACAACC-ACA TAA TATAGGTTGTTGC TTTTTTTAGTATATG stu1384 1215082 - 1214723 - | hypothetical protein umuC1 1216494 - 1215079 - | SOS responce UmuC protein TERM 1573 1215313 - 1215339 + g 86 -8.9 -4.32177 | gap 1 AGAATAATTAACCGC TACACTTC-GGA TTGC TCCTGAAGTGTA TTTATTATGGAATAA TERM 1574 1216614 - 1216592 - R 93 -7 -5.58454 | opp_overlap 1216592 TCGAGAGTAAAAAAA CACCAATAAC TGT GTAATTGGCG TTTTCAGTAGTCTTC stu1386 1217704 - 1216667 - | hypothetical protein stu1387 1217942 - 1218229 + | hypothetical protein stu1388 1218478 - 1218726 + | hypothetical protein TERM 1575 1219292 - 1219318 + G 76 -4.7 -5.00851 | AAAATGGATTTTTAT TGATATTTTTA AATCC TAAAAATATTA TTTTCTTTGCTTCAT TERM 1576 1219403 - 1219427 + G 76 -7.3 -4.24562 | TAAGTTTGACATATC TAATTGTTGGT TTA ATCAACGATTA TTTATATAGTTTTTT stu1389 1218937 - 1219554 + | resistance to homoserine/threonine (RhtB) family protein TERM 1577 1219769 - 1219718 - f 70 -4.5 -4.69464 | opp_overlap 1219720, overlap 1219719 1219720 1219759 AAAACACTCTAAAAA TGGCTCTATAATTTCTGTAGTGG GTGAAA CCACTGTAGAGATTATAGAGCTT TTTAAGTGTACACAA TERM 1578 1219768 - 1219719 - f 72 -8 -3.40051 | opp_overlap 1219720, overlap 1219718 1219720 1219759 AAACACTCTAAAAAT GGCTCTATAATTTCTGTAGTGG GTGAAA CCACTGTAGAGATTATAGAGCT TTTTAAGTGTACACA TERM 1579 1219767 - 1219720 - f 83 -11.5 -2.62946 | opp_overlap 1219720, overlap 1219719 1219718 1219759 AACACTCTAAAAATG GCTCTATAATTTCTGTAGTGG GTGAAA CCACTGTAGAGATTATAGAGC TTTTTAAGTGTACAC TERM 1580 1219720 - 1219767 + F 100 -18.1 -4.70659 | opp_overlap 1219720 1219719 1219718 1219759 AACACTCTAAAAATG GCTCTATAATTTCTGTAGTGG GTGAAA CCACTGTAGAGATTATAGAGC TTTTTAAGTGTACAC stu1390 1219840 - 1219932 + | truncated IS1193 transposase stu1391 1220254 - 1219895 - | hypothetical protein stu1392 1222905 - 1220812 - | glycosyl transferase TERM 1581 1222884 - 1222904 + g 83 -3.3 -5.69793 | opp_overlap 1222887, overlap 1222887 TATAAACGGGAATAA TTACGGAAA TTT TTTCTGTCA TTTTTTATTTCCTAT TERM 1582 1223686 - 1223669 - g 76 -7.1 -4.21812 | CGTTATTGAAAATAA TATAGGA ACTT TCCTATA TGAAATCGCTAAAGA stu1393 1223484 - 1223819 + | hypothetical protein TERM 1583 1224156 - 1224135 - T 77 -8.8 -3.53307 | opp_overlap 1224127 1224135 AACAATTCTACATAA GGTAGTTG TTGATG CAACTACC TTTTTTCTATGCTGA TERM 1584 1224135 - 1224156 + T 100 -9.5 -5.39721 | opp_overlap 1224135, overlap 1224127 AACAATTCTACATAA GGTAGTTGT TGAT GCAACTACC TTTTTTCTATGCTGA sbcC 1227419 - 1224240 - | ATP-dependent dsDNA exonuclease sbcD 1228642 - 1227416 - | ATP-dependent dsDNA exonuclease TERM 1585 1229437 - 1229407 - R 79 -10.6 -2.78032 | opp_overlap 1229407 1229412, overlap 1229392 1229412 TCTCCTTTAAAACAT GAAAAGAGAAGCCT CCA AAGCTTCTCTTTTA TAATTATCAAATAAT TERM 1586 1229412 - 1229432 + r 84 -8.3 -4.58466 | opp_overlap 1229392 1229407 1229412, overlap 1229407 TTTAAAACATGAAAA GAGAAGCCT CCA AAGCTTCTC TTTTATAATTATCAA TERM 1587 1229432 - 1229412 - R 100 -10.5 -4.55826 | opp_overlap 1229412 1229407, overlap 1229392 1229407 TTTAAAACATGAAAA GAGAAGCCT CCA AAGCTTCTC TTTTATAATTATCAA lacZ 1232558 - 1229478 - | beta-galactosidase lacS 1234466 - 1232562 - | lactose permease TERM 1588 1233974 - 1233988 + g 74 -4.2 -5.10029 | opp_overlap 1233974, overlap 1233975 TCGTAGAACCAATAC GGGCAA AAG TTGCCA TTTTTTCACGTTCGT TERM 1589 1233975 - 1233987 + g 70 -7.7 -3.64933 | opp_overlap 1233974, overlap 1233974 CGTAGAACCAATACG GGCAA AAG TTGCC ATTTTTTCACGTTCG galM 1235615 - 1234569 - | aldose 1-epimerase TERM 1590 1235633 - 1235663 + r 91 -2.7 -6.08342 | opp_overlap 1235633 TATTTCCTCAAAAAA CAAAGAGTACA ACAATTATA TATACTCTTTG TTTTTTTGTTTATTA TERM 1591 1235663 - 1235633 - R 75 -4.9 -5.0133 | opp_overlap 1235633 TATTTCCTCAAAAAA CAAAGAGTACA ACAATTATA TATACTCTTTG TTTTTTTGTTTATTA galE1 1236686 - 1235685 - | UDP-glucose 4-epimerase TERM 1592 1236488 - 1236504 + g 73 -7.3 -3.9712 | CAGCATCAACATCAG GGTTTTC TTT GAAGACC TTTCTCATAAAATCC galT 1238224 - 1236716 - | galactose-1-phosphate uridylyltransferase galK 1239383 - 1238217 - | galactokinase galR 1239526 - 1240521 + | galactose operon repressor TERM 1593 1240773 - 1240808 + T 95 -8.5 -5.055 | opp_overlap 1240773 TAATTTAAACAACAA TAATCCGTCTTACTT CATCAA GAGTGAGATGGATTA TTTTTTCACCATTAA TERM 1594 1241014 - 1241024 + T 80 -6.8 -4.69549 | overlap 1240993 GTTCAGTATTGCACA GGAC TGA GTCC TTTTAGTTTTACCTT stu1405 1241504 - 1241316 - | hypothetical protein TERM 1595 1241594 - 1241648 + r 76 -7.5 -4.07568 | gap 2, opp_overlap 1241599, overlap 1241597 1241598 1241610 AACTCAATTTCATAA T-AAAAGCACCCCAA-AAGTTAGAC CTTCTCT GTCTAACTTTTTGGGGTGCAATTCA TTTTCGCCAAAGGGA TERM 1596 1241597 - 1241644 + r 89 -10.8 -3.66908 | gap 1, opp_overlap 1241599, overlap 1241594 1241598 1241610 TCAATTTCATAATAA AAGCACCCCAA-AAGTTAGAC CTTCTCT GTCTAACTTTTTGGGGTGCAA TTCATTTTCGCCAAA TERM 1597 1241598 - 1241643 + r 93 -14.3 -2.79823 | gap 1, opp_overlap 1241599, overlap 1241597 1241594 1241610 CAATTTCATAATAAA AGCACCCCAA-AAGTTAGAC CTTCTCT GTCTAACTTTTTGGGGTGCA ATTCATTTTCGCCAA TERM 1598 1241642 - 1241599 - R 100 -17.8 -4.78839 | gap 1, opp_overlap 1241598 1241597 1241594 1241610 AATTTCATAATAAAA GCACCCCAA-AAGTTAGAC CTTCTCT GTCTAACTTTTTGGGGTGC AATTCATTTTCGCCA TERM 1599 1241610 - 1241630 + r 71 -5.5 -4.62336 | opp_overlap 1241599, overlap 1241598 1241597 1241594 AAAAGCACCCCAAAA GTTAGAC CTTCTCT GTCTAAC TTTTTGGGGTGCAAT stu1406 1242768 - 1241677 - | zinc metalloprotease ZmpB, truncated stu1407 1243171 - 1242731 - | zinc metalloprotease ZmpB, truncated stu1408 1243300 - 1243202 - | zinc metalloprotease ZmpB, truncated stu1409 1243667 - 1243927 + | ABC transporter ATP binding protein, truncated stu1410 1244083 - 1243982 - | ABC transporter, putative ATP binding protein, truncated stu1411 1244680 - 1244114 - | ABC transporter, truncated stu1412 1244838 - 1244566 - | ABC transporter, truncated TERM 1600 1245278 - 1245267 - H 80 -7.2 -4.57474 | opp_overlap 1245268 1245269, overlap 1245268 1245269 TGAAGGCATACAAAA GCCC CTGA GGGC ATACCCTAGGGATTC stu1413 1245523 - 1247787 + | bifunctional glutamate--cysteine ligase/glutathione synthetase TERM 1601 1247827 - 1247874 + F 100 -18.1 -4.70659 | AGCACCTTTATCATG GCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGC TTTTTGAATGTAGAC TERM 1602 1248202 - 1248259 + G 100 -15.9 -2.94695 | opp_overlap 1248184 1248256, overlap 1248184 1248203 CAAGGGTTATGTCCT GGGATGAGTTTGGTTTCAAGAAAGGTG AACT CGCTTTTGTTGAAACCAAACTCATAAC TATCCTTGATAATCA stu1414 1247844 - 1248509 + | truncated IS1193 transposase TERM 1603 1248967 - 1248945 - g 83 -6.3 -5.10064 | CTGAACATACAAAAA GAGAAAACC TATCC GGTCCTCTC TAGATGTTAGCTTTT stu1415 1248807 - 1248977 + | truncated IS1193 transposase ftsK 1251525 - 1249096 - | cell division protein TERM 1604 1251576 - 1251561 - R 89 -7.6 -5.24989 | opp_overlap 1251563 TTAGATACGAAAAAA GAGAGA CGAG TCTCTC TTAAGATTGAAGACA trxB2 1252676 - 1251678 - | thioredoxin reductase TERM 1605 1252628 - 1252611 - G 85 -8.3 -4.3739 | overlap 1252613 TAGGCCGGCATAAAA GGCGGCC CAAA GGCCGAC TGGTCCACCACCGAT TERM 1606 1252626 - 1252613 - G 70 -9.5 -2.52946 | overlap 1252611 GGCCGGCATAAAAGG CGGCC CAAA GGCCG ACTGGTCCACCACCG trmD 1253397 - 1252678 - | tRNA (guanine-N(1)-)-methyltransferase rimM 1253905 - 1253387 - | 16S rRNA-processing protein TERM 1607 1254114 - 1254097 - R 93 -7 -5.75478 | opp_overlap 1254105 AAGGACACAAAAAAA CCAGCT TTCTCT AGCTGG AGCTTATAGTCCGTA TERM 1608 1254382 - 1254364 - R 100 -9.6 -5.40072 | opp_overlap 1254367 TTTTTTTCAAAAAAA CAATCGGC ATA ACCGATTG CTAGGAGTTAGGAGA TERM 1609 1254514 - 1254500 - R 80 -7.2 -4.55295 | GTTGCTAGAAATAAA GTCAAA CAC TTTGAC TCGTAAAATAAGAGA rr08 1255220 - 1254576 - | response regulator (homolog to RR03 Spn) hk08 1256220 - 1255210 - | sensor histidine kinase (homolog to HK03 Spn) stu1422 1256915 - 1256217 - | hypothetical protein TERM 1610 1257171 - 1257207 + r 75 -8.9 -3.38812 | CTTCTCAAGCTCAGC TATTTTTCGTTCAGTTT AGC GACCTGAACGAAAAAAA TATTATTAAGAGAGC stu1423 1257336 - 1257181 - | potassium channel, putative, truncated stu1424 1257720 - 1257568 - | potassium channel, putative, truncated TERM 1611 1257924 - 1257942 + r 79 -4.5 -5.27206 | opp_overlap 1257924, overlap 1257918 CAATTGAATCAAAAA GAGAGTC AGAAA GCCTCTC TTTTTCTTATATCTA TERM 1612 1257942 - 1257924 - R 73 -4.5 -4.90013 | opp_overlap 1257924 1257918 CAATTGAATCAAAAA GAGAGTC AGAAA GCCTCTC TTTTTCTTATATCTA pknB 1259844 - 1257973 - | protein kinase TERM 1613 1258829 - 1258843 + g 87 -3.6 -5.81412 | ACCTTGAGTAGAGTT GAAAAG AGA TTTTTC TTTTTTTTAGATAGA pppL 1260662 - 1259844 - | phosphoprotein phosphatase sunL 1261956 - 1260625 - | RNA-binding protein TERM 1614 1261910 - 1261923 + gr 72 -5.9 -4.36089 | overlap 1261920 TCTAAAACTTCAAGT GCCTG TCCA CGGGC TGTTTTTTTCCAATC fmt 1262872 - 1261937 - | methionyl-tRNA formyltransferase priA 1265286 - 1262890 - | primosome assembly protein PriA TERM 1615 1265393 - 1265366 - R 100 -11.4 -4.11585 | gap 1, opp_overlap 1265364 1265367 1265370, overlap 1265367 1265370 ATGCATCATAAAGAA GGAAGCTGAGACA CTA TGCCTCAGC-TCC TCTTATCCTCGTAAA TERM 1616 1265393 - 1265367 - R 90 -13.8 -3.06228 | opp_overlap 1265364 1265367 1265370, overlap 1265366 1265370 TGCATCATAAAGAAG GAAGCTGAGACA CTA TGCCTCAGCTCC TCTTATCCTCGTAAA TERM 1617 1265367 - 1265393 + r 77 -9.4 -3.29273 | opp_overlap 1265366 1265367 1265370, overlap 1265364 1265370 TGCATCATAAAGAAG GAAGCTGAGACA CTA TGCCTCAGCTCC TCTTATCCTCGTAAA TERM 1618 1265390 - 1265370 - R 91 -11.9 -3.66301 | opp_overlap 1265367 1265364 1265370, overlap 1265366 1265367 ATCATAAAGAAGGAA GCTGAGACA CTA TGCCTCAGC TCCTCTTATCCTCGT TERM 1619 1265370 - 1265390 + r 76 -9.7 -2.8214 | opp_overlap 1265370 1265366 1265367, overlap 1265367 1265364 ATCATAAAGAAGGAA GCTGAGACA CTA TGCCTCAGC TCCTCTTATCCTCGT rpoZ 1265742 - 1265428 - | DNA-directed RNA polymerase subunit omega gmk 1266393 - 1265764 - | guanylate kinase TERM 1620 1266436 - 1266470 + r 80 -9.5 -3.64049 | opp_overlap 1266421 TCTTATTATGACTTA CCATAAAAAGAGAAG TAAAT CATTTCTTTTTATGG TTTAGGGGTTGTTCA TERM 1621 1266610 - 1266582 - R 77 -6.1 -4.79223 | opp_overlap 1266582 1266573 GGACACTATTAAAAA GAGTGAATACC TTTTCCC AGTACTCACTC TTTTTAAATATCTTT ftsY 1268017 - 1266626 - | signal recognition particle receptor (docking protein) stu1433 1268846 - 1268031 - | hypothetical protein stu1434 1269633 - 1268839 - | hypothetical protein stu1435 1269817 - 1270194 + | GntR family transcriptional regulator stu1436 1270199 - 1270897 + | ABC transporter ATP binding protein stu1437 1270903 - 1271694 + | ABC transporter membrane-spanning protein TERM 1622 1271723 - 1271702 - T 100 -13.1 -5.33405 | opp_overlap 1271702 TGGACTAAAGAAAAA TCGTGTTCC TTTT GGAACACGA TTTTTTTGCATTGAA TERM 1623 1271702 - 1271723 + T 100 -13.1 -5.53288 | opp_overlap 1271702 TGGACTAAAGAAAAA TCGTGTTCC TTTT GGAACACGA TTTTTTTGCATTGAA amiF1 1272688 - 1271744 - | oligopeptide ABC uptake transporter ATP-binding protein TERM 1624 1272583 - 1272545 - G 81 -11.8 -2.83715 | opp_overlap 1272553 1272556, overlap 1272511 1272553 TTTACCACTACCAGA CTCACCAACGAGGGAGAA GGT TTCACCCTTGTTGATGAA AAAATTAGCATTGTG TERM 1625 1272619 - 1272635 + g 71 -9.5 -2.77431 | overlap 1272618 CAACGAACTTCTTTC TTCCTTC GCC GAAGGAA ATTTCCACATCTTTT amiE 1273751 - 1272666 - | oligopeptide ABC uptake transporter ATP-binding protein amiD 1274687 - 1273761 - | oligopeptide ABC uptake transporter membrane-binding protein amiC 1276180 - 1274687 - | oligopeptide ABC uptake transporter membrane-binding protein TERM 1626 1275238 - 1275254 + g 71 -5.1 -4.58395 | AGACACCTGTTGACA CACTATC AAA GATTGTG TTTTTAAAGAGTGCC stu1442 1278209 - 1276242 - | oligopeptide ABC uptake transporter substrate-binding protein, truncated TERM 1627 1276778 - 1276792 + g 73 -7.2 -3.99353 | overlap 1276784 TAGTCACATTATTCA TGTCAT CAG ATGACA TTTGGTTAATATCTA TERM 1628 1278439 - 1278403 - H 95 -9 -5.02476 | gap 1, opp_overlap 1278410 1278412, overlap 1278391 1278412 ATATTTTCTAAAAAA TAG-AAAAAAGCCATCC AAAC GGATAGCTCTTTTACTA TTTAGGCTCTATAAT TERM 1629 1278429 - 1278412 - H 93 -7.7 -5.72118 | opp_overlap 1278412 1278410, overlap 1278403 AAAAAATAGAAAAAA GCCATCC AAAC GGATAGC TCTTTTACTATTTAG TERM 1630 1278445 - 1278492 + H 100 -12.3 -4.70659 | opp_overlap 1278489 1278491 TCTTTTACTATTTAG GCTCTATAATTTCTGTAGTGG GTAAAA CTACTGTAGGGATTATAGAGC TTTTTGAGTGTACAC TERM 1631 1279809 - 1279791 - g 93 -10.3 -5.09685 | opp_overlap 1279783 1279793 GAACATACATAAAAA GAGGACC TATCC GGTCCTC TCTAGATGTTAGCTT tnp1193 1278565 - 1279821 + | IS1193 transposase amiA3 1281832 - 1279859 - | oligopeptide ABC uptake transporter substrate-binding protein TERM 1632 1282077 - 1282045 - R 77 -8.5 -3.68886 | opp_overlap 1282045 ACTAATTTATCCAAA GGATTTAGTTCTGTA TTG CACAGGACTAAGTCC TTTTAATTTTACTTT TERM 1633 1282045 - 1282077 + r 100 -12.2 -4.74084 | opp_overlap 1282045 ACTAATTTATCCAAA GGATTTAGTTCTGT ATTGC ACAGGACTAAGTCC TTTTAATTTTACTTT stu1446 1282143 - 1282036 - | hypothetical protein stu1447 1282711 - 1282217 - | oligopeptide ABC uptake transporter ATP-binding protein, truncated stu1449 1283018 - 1282818 - | hypothetical protein TERM 1634 1282960 - 1282978 + g 80 -2.4 -5.60993 | TTAAGATACGTATGT GTATCGAA AAT TTCCATGC TTTTTTTATAACACA TERM 1635 1283031 - 1283051 + H 72 -6.1 -4.2803 | opp_overlap 1283032, overlap 1283035 CAAGTGTGAGGAAAA TGGGGGGGA AAG TTCCCCTTA TTTTACCTTAAAATC TERM 1636 1283035 - 1283048 + H 81 -8.1 -4.25859 | opp_overlap 1283032, overlap 1283031 TGTGAGGAAAATGGG GGGGA AAGT TCCCC TTATTTTACCTTAAA TERM 1637 1283349 - 1283365 + G 73 -8.7 -3.73873 | CAAAAATCGTTACCT CATCGCA AGC TGCGGTG TTATCTTGCATTTAA oxlT 1283326 - 1284531 + | oxalate:formate antiporter TERM 1638 1284580 - 1284624 + T 100 -15.4 -4.58773 | opp_overlap 1284580 1284586, overlap 1284586 TTGGACAATTAATTA TTGAAAGGATTTAGTTCTGT ACTGC ACAGGACTAAGTCCTTTTAA TTTTACTTTAATGCG TERM 1639 1284624 - 1284580 - T 73 -9.5 -2.87274 | opp_overlap 1284580 1284586, overlap 1284586 TTGGACAATTAATTA TTGAAAGGATTTAGTTCTGTA CTG CACAGGACTAAGTCCTTTTAA TTTTACTTTAATGCG TERM 1640 1284618 - 1284586 - T 79 -8.5 -3.72642 | opp_overlap 1284580 1284586, overlap 1284580 AATTAATTATTGAAA GGATTTAGTTCTGTA CTG CACAGGACTAAGTCC TTTTAATTTTACTTT TERM 1641 1284586 - 1284618 + T 100 -12.2 -4.74084 | opp_overlap 1284586 1284580, overlap 1284580 AATTAATTATTGAAA GGATTTAGTTCTGT ACTGC ACAGGACTAAGTCC TTTTAATTTTACTTT stu1451 1285215 - 1284577 - | hypothetical protein TERM 1642 1284799 - 1284811 + g 72 -3.4 -5.06414 | CTTGTGGGACATGGA TGGA CGAAT TCCA TTTTTCTTAAGAAAA stu1452 1285416 - 1285222 - | hypothetical protein stu1453 1285580 - 1285392 - | hypothetical protein stu1454 1285985 - 1285680 - | hypothetical protein TERM 1643 1285977 - 1285937 - G 100 -17.2 -5.19328 | opp_overlap 1285934 ATTTCATAATAAAAA CACCCCAAAAGTTAGA TTTTTTCTG TCTAACTTTTGGGGTG CAGTTCACTTAGCCA eutD 1286997 - 1286014 - | phosphotransacetylase stu1456 1287907 - 1287011 - | ribosomal large subunit pseudouridine synthase D ppnK 1288743 - 1287904 - | inorganic polyphosphate/ATP-NAD kinase stu1459 1289437 - 1288712 - | GTP pyrophosphokinase, putative stu1458 1289401 - 1290057 + | hypothetical protein TERM 1644 1290164 - 1290183 + FH 93 -7.9 -5.4251 | opp_overlap 1290166 TTTACTTCATTTTAA GACAAGG ATCAAC CCTTGTC TTTTTTATATATGCA TERM 1645 1291139 - 1291119 - g 71 -6.1 -4.14472 | overlap 1291120 TTAATACGGGTAAAA CTTTTGCCG AAG CGGCTAAAA TCCTAGAACGTGGTG prsA2 1290380 - 1291393 + | ribose-phosphate pyrophosphokinase TERM 1646 1291893 - 1291875 - g 71 -7.5 -3.95584 | opp_overlap 1291891 TTCCTATTAAGGAAA TTGGTGA CCTGC TCACCAA CCACCAGGCTGCTTT nifS3 1291397 - 1292509 + | aminotransferase (class V), putative stu1462 1292511 - 1292858 + | hypothetical protein TERM 1647 1292908 - 1292874 - f 95 -14.7 -2.8805 | opp_overlap 1292880 1292883, overlap 1292876 1292880 1292883 ACCATTTGTTAGATA TATAAATAACCTATC CTAGT GATAGGTTATTTATA TCGCATCATTTATAC TERM 1648 1292906 - 1292876 - f 88 -12.9 -2.9914 | opp_overlap 1292880 1292883, overlap 1292874 1292880 1292883 CATTTGTTAGATATA TAAATAACCTATC CTAGT GATAGGTTATTTA TATCGCATCATTTAT TERM 1649 1292880 - 1292902 + F 85 -9.3 -4.053 | opp_overlap 1292876 1292874 1292880 1292883, overlap 1292883 TGTTAGATATATAAA TAACCTATC CTAGT GATAGGTTA TTTATATCGCATCAT TERM 1650 1292902 - 1292880 - f 89 -9.3 -4.17296 | opp_overlap 1292880 1292883, overlap 1292876 1292874 1292883 TGTTAGATATATAAA TAACCTATC CTAGT GATAGGTTA TTTATATCGCATCAT TERM 1651 1292899 - 1292883 - f 71 -6.6 -4.2028 | opp_overlap 1292880 1292883, overlap 1292880 1292876 1292874 TAGATATATAAATAA CCTATC CTAGT GATAGG TTATTTATATCGCAT TERM 1652 1292883 - 1292899 + F 71 -6.6 -4.15029 | opp_overlap 1292883 1292880 1292876 1292874, overlap 1292880 TAGATATATAAATAA CCTATC CTAGT GATAGG TTATTTATATCGCAT stu1463 1292967 - 1293662 + | redox-sensing transcriptional repressor Rex stu1464 1293655 - 1294350 + | glutamine amidotransferase (class I), putative TERM 1653 1294348 - 1294381 + T 70 -6.9 -3.80279 | opp_overlap 1294353, overlap 1294353 GTTGTAGATGAACTT TAAAAGCAACTGA TACTGCAC TCAGTTGCTTTTC TTGTGTCTTTATAGA TERM 1654 1294376 - 1294353 - T 71 -6.8 -4.21098 | opp_overlap 1294348 1294353 AGATGAACTTTAAAA GCAACTGA TACTGCAC TCAGTTGC TTTTCTTGTGTCTTT TERM 1655 1294353 - 1294376 + T 83 -6.8 -4.91357 | opp_overlap 1294353, overlap 1294348 AGATGAACTTTAAAA GCAACTGA TACTGCAC TCAGTTGC TTTTCTTGTGTCTTT radC 1295089 - 1294403 - | DNA repair protein RadC TERM 1656 1294581 - 1294563 - G 72 -10.4 -2.70932 | GCTTCCCCCGAAGGA TGATTGTG GAC CACAATCA AGGAAGTTGCCATCA TERM 1657 1295128 - 1295099 - R 100 -10.8 -5.62045 | ATACATAAGAAAAAA CCTCCTACTTAC TTATTC GTAAGTGGGAGG GGGAAGTTACTATTT rgpF 1296922 - 1295138 - | polysaccharide biosynthesis protein TERM 1658 1295335 - 1295348 + g 74 -3.9 -5.0538 | TATCTACAAATGGCG TGATA TAGA TATCA TTTTTTGCAATAGCA rgpE 1297974 - 1296919 - | polysaccharide biosynthesis protein/putative glycosyltransferase rgpD 1299199 - 1297994 - | polysaccharide ABC exporter ATP-binding protein rgpC 1300029 - 1299199 - | polysaccharide ABC exporter membrane-spanning protein TERM 1659 1299967 - 1299982 + gr 70 -3.3 -4.87665 | GGTTTTAACCATTTC TCGTA ATAAAA TACGA TTTTTCTGACTAAAA rgpB 1300948 - 1299992 - | polysaccharide biosynthesis protein/putative rhamnosyl transferase rgpA 1302111 - 1300945 - | polysaccharide biosynthesis protein/putative rhamnosyl transferase TERM 1660 1302188 - 1302171 - R 72 -4.8 -4.81359 | opp_overlap 1302171 AATGCAAACAGAAAA GCAGCC ACAGGG GACTGC TATTAATAAAATATT TERM 1661 1302192 - 1302204 + r 71 -3.5 -5.1675 | ACAGGGGACTGCTAT TAATA AAA TATTA TTTTTTACTAAGTAA TERM 1662 1302226 - 1302240 + r 70 -3.6 -4.89477 | ACTAAGTAAAACTCT CTTTAT ATC ATAGAG TTTTATTATTCCGCC rgpX2 1303212 - 1302202 - | polysaccharide biosynthesis protein, putative rhamnosyl transferase rgpX3 1304486 - 1303212 - | polysaccharide biosynthesis protein, putative transporter TERM 1663 1303953 - 1303937 - G 79 -5.1 -5.10601 | overlap 1303939 ACAAAAGGATAAAAA GTCCATT CCA AATGGTC AAAGCTAGCAAGGAT stu1481 1304811 - 1304479 - | hypothetical protein stu1482 1305506 - 1304817 - | glycosyltransferase TERM 1664 1305078 - 1305092 + g 73 -8.6 -3.76402 | TGGATCCTTAATTGT CTTACC AGT GGTAAG TTTGATAGCTGAACT rmlD 1306461 - 1305589 - | dTDP-4-keto-L-rhamnose reductase TERM 1665 1306504 - 1306490 - R 91 -5.7 -5.80364 | opp_overlap 1306490 ATTTTAACAAAAAAA GCAGA AAAAA TCTGC TTTTACTCAATATTA stu1484 1307863 - 1306517 - | hypothetical protein TERM 1666 1307312 - 1307298 - G 85 -2.8 -5.78622 | opp_overlap 1307303, overlap 1307300 1307303 GCACCTGAAAAAAAA GCCAAT GGA ATTGTC CATAATATATTATAT TERM 1667 1307808 - 1307837 + g 100 -8.1 -6.01187 | gap 1, opp_overlap 1307815 1307816 1307818, overlap 1307812 GTGACTACAACGAGG CATACAAGGAGATA AAC TATCTCTTTGT-TG TTTTTTTCTTTCATT TERM 1668 1307812 - 1307834 + g 93 -10 -5.01858 | opp_overlap 1307815 1307816 1307818, overlap 1307808 CTACAACGAGGCATA CAAGGAGATA AAC TATCTCTTTG TTGTTTTTTTCTTTC TERM 1669 1307910 - 1307896 - R 91 -5.7 -5.80364 | opp_overlap 1307896 ATTCTAACAAAAAAA GCAGA AAAAA TCTGC TTTCATTTATAATTC stu1485 1308881 - 1307964 - | glycosyl transferase family protein TERM 1670 1308941 - 1308914 - R 77 -5 -5.03314 | gap 1, opp_overlap 1308900 TTTATTTTCAAAAAA GTAATTATGCTAC TTT GT-GCATTATTAC AATCAATTTTTTAAT stu1486 1310359 - 1308944 - | hypothetical protein TERM 1671 1308991 - 1309012 + g 71 -6 -4.1466 | opp_overlap 1308990 AATAATATACTAGAG GTATTGTT GATAAG AACAATAC TTTTACAGATTGCGT TERM 1672 1310206 - 1310218 + g 70 -7.7 -3.75024 | opp_overlap 1310203 AATAGGTTATAACTC GTGCA TAA TGCAC TTGTTCATCATACCA TERM 1673 1310289 - 1310279 - G 78 -4 -5.25803 | opp_overlap 1310279 1310288, overlap 1310288 AATTCCTACAAAAAA TATC AAT GATA TTTGAAATAAATATA TERM 1674 1310637 - 1310599 - R 100 -17.8 -5.00884 | opp_overlap 1310604 ATTGCTCTCAAAAAA GACAATCACATTTACCTT TTA AAGACAAATGTGATTGTC TCAGCTAAAAGTTAA stu1487 1311058 - 1310693 - | hypothetical protein TERM 1675 1310970 - 1310988 + g 73 -2.4 -5.25805 | overlap 1310985 ACCATTTCTAAGGCT TCCAAGAT ACG GTCTTTGA TTTTTTCAATTTCTT TERM 1676 1311066 - 1311048 - G 78 -11 -3.08032 | opp_overlap 1311047, overlap 1311045 TTTCCTCCAAAATCA GGGCCTAA CAA TCAGGCCC CTTCCATTTACTATC rpoD 1312191 - 1311082 - | RNA polymerase sigma factor RpoD TERM 1677 1312112 - 1312122 + g 93 -6.8 -5.37345 | opp_overlap 1312111 ATTTCATCATCAATT GCTG TAC CAGC TTTTTTGTGATTACG dnaG 1314006 - 1312195 - | DNA primase TERM 1678 1313814 - 1313775 - G 87 -8.8 -4.64861 | gap 1 TTTCTTGAAAAGAAA TCTGACGATATTCTTCTAA AAA TTTGAAG-ACATCGCCAGA CTTGCCACAACCAAA TERM 1679 1314280 - 1314249 - R 93 -10.2 -3.94989 | opp_overlap 1314251, overlap 1314250 1314253 TAAAGACACATGAAA CTTAGGACGTCTGA AATC TCAGACGTCCTATT TTTTGTTTCTCATGA TERM 1680 1314279 - 1314250 - R 89 -13.7 -2.95909 | opp_overlap 1314251, overlap 1314249 1314253 AAAGACACATGAAAC TTAGGACGTCTGA AATC TCAGACGTCCTAT TTTTTGTTTCTCATG TERM 1681 1314251 - 1314278 + r 100 -17.2 -5.73978 | opp_overlap 1314250 1314249 1314253 AAGACACATGAAACT TAGGACGTCTGA AATC TCAGACGTCCTA TTTTTTGTTTCTCAT TERM 1682 1314276 - 1314253 - R 100 -15.4 -2.70315 | opp_overlap 1314251, overlap 1314250 1314249 GACACATGAAACTTA GGACGTCTGA AATC TCAGACGTCC TATTTTTTGTTTCTC TERM 1683 1314333 - 1314350 + r 91 -5.6 -5.82172 | opp_overlap 1314333, overlap 1314326 GATAAAAAGAAAAAA GCTTGA AAATAC TCAAGC TTTTTTTCTGTTAAT TERM 1684 1314350 - 1314333 - R 100 -6.3 -5.98675 | opp_overlap 1314333 1314326 GATAAAAAGAAAAAA GCTTGAA AATA CTCAAGC TTTTTTTCTGTTAAT rpsU 1314553 - 1314377 - | 30S ribosomal protein S21 TERM 1685 1314739 - 1314718 - R 85 -6.6 -5.36441 | TTCCTATACAAAAAA CTAGAGGA TTCATC TCCCCTAG CTACTGATTTATTCA stu1492 1315542 - 1314748 - | polar amino acid ABC uptake transporter substrate binding protein stu1493 1316747 - 1315635 - | transaminase TERM 1686 1316865 - 1316852 - R 74 -2.3 -5.5074 | opp_overlap 1316852 GAATTCAATAAAAAA TGGGG TATT CCTCA TTTTAGATTTAAGAA TERM 1687 1316971 - 1316946 - R 75 -6.9 -4.25104 | opp_overlap 1316947 1316948 1316969 1316970 TCGCCGTGATGAAAA CACCTGAAGCA GGCT TGTTTCAGATG CTCGAAAATTTCGAG stu1494 1317888 - 1317091 - | polar amino acid ABC uptake transporter substrate binding protein stu1495 1318721 - 1317885 - | polar amino acid ABC uptake transporter substrate binding protein TERM 1688 1318919 - 1318896 - R 93 -7.6 -5.66989 | opp_overlap 1318896 CAAAGACTAAAAAAA CTATTCATTC ATTT GAATAAATAG TTCATTTTTCACCAA stu1496 1319392 - 1318928 - | MutT/nudix family protein uvrB 1321443 - 1319437 - | excinuclease ABC subunit B stu1498 1322015 - 1321575 - | hypothetical protein TERM 1689 1322114 - 1322092 - R 73 -4.1 -4.9755 | ACATAGAAGTAAAAA GACCGAGTC TTTAG AACTCAGCC TTAAGAATTTTCTTT stu1499 1322538 - 1322188 - | hypothetical protein stu1500 1323051 - 1322770 - | hypothetical protein TERM 1690 1325303 - 1325287 - g 79 -9.5 -3.65902 | GTTATCTCATTGAAA GATACGA CTA TCGTATC AGCTATCGGTTTGGT gnlP 1323250 - 1325460 + | glutamine ABC uptake transporter membrane-spanning protein gnlQ 1325460 - 1326200 + | glutamine ABC uptake transporter ATP-binding protein TERM 1691 1326233 - 1326210 - T 83 -8.2 -4.3534 | opp_overlap 1326210 GCCTAATTATTAAAA CAGTTACTTC TAAT GAGGTAACTG TTTTTGATTACCAAT TERM 1692 1326210 - 1326233 + T 100 -10.4 -4.86621 | opp_overlap 1326210 GCCTAATTATTAAAA CAGTTACTTC TAAT GAGGTAACTG TTTTTGATTACCAAT TERM 1693 1326300 - 1326248 - T 91 -13.1 -3.21099 | opp_overlap 1326262, overlap 1326249 1326254 1326262 GTTTTTGATTACCAA TTTAAATAAAAAAACAGGGCAAGTA CTA CACTTGCTCTGTTTCTTCATTTAAT TCAGGGTGTTTTGCC TERM 1694 1326299 - 1326249 - T 100 -16.6 -2.52516 | opp_overlap 1326262, overlap 1326248 1326254 1326262 TTTTTGATTACCAAT TTAAATAAAAAAACAGGGCAAGTA CTA CACTTGCTCTGTTTCTTCATTTAA TTCAGGGTGTTTTGC TERM 1695 1326294 - 1326254 - T 91 -12.1 -3.79043 | opp_overlap 1326262, overlap 1326249 1326248 1326262 GATTACCAATTTAAA TAAAAAAACAGGGCAAGTA CTA CACTTGCTCTGTTTCTTCA TTTAATTCAGGGTGT TERM 1696 1326262 - 1326286 + T 100 -10.8 -4.42206 | opp_overlap 1326254 1326249 1326248 1326262 ATTTAAATAAAAAAA CAGGGCAAGT ACTAC ACTTGCTCTG TTTCTTCATTTAATT TERM 1697 1326286 - 1326262 - T 100 -9.3 -5.96894 | opp_overlap 1326262, overlap 1326254 1326249 1326248 ATTTAAATAAAAAAA CAGGGCAAGTA CTA CACTTGCTCTG TTTCTTCATTTAATT stu1503 1326470 - 1326273 - | hypothetical protein TERM 1698 1326599 - 1326628 + r 100 -18.1 -3.57792 | opp_overlap 1326604 1326608 ATAGCGGCCGCCGTA GACTATCAAGTGC TGAA GCACTTGATAGTC TTTCAACGTCAATCC TERM 1699 1326623 - 1326604 - R 81 -10.8 -2.62184 | opp_overlap 1326599, overlap 1326608 GGCCGCCGTAGACTA TCAAGTGC TGAA GCACTTGA TAGTCTTTCAACGTC obgE 1327944 - 1326637 - | GTPase ObgE TERM 1700 1328041 - 1328030 - R 93 -5.8 -5.77988 | opp_overlap 1328030 ACATACACAAAAAAA CGCT TGAT AGCG TCTTAACGGACAGCT TERM 1701 1328295 - 1328277 - R 70 -4.6 -4.68506 | overlap 1328279 AAGGAATTCCAAAAA TAGTTAGA GCG TCTAACTC CTCCTGTGTCAAACG TERM 1702 1328293 - 1328279 - R 73 -7.2 -3.94933 | overlap 1328277 GGAATTCCAAAAATA GTTAGA GCG TCTAAC TCCTCCTGTGTCAAA rsuA2 1328985 - 1328254 - | ribosomal small subunit pseudouridine synthase A stu1506 1329219 - 1328986 - | hypothetical protein stu1507 1329648 - 1329355 - | hypothetical protein TERM 1703 1329662 - 1329646 - G 73 -9.5 -3.17622 | opp_overlap 1329649, overlap 1329649 CATCGGCACAAGAGA CAACTCT AGA AGAGTTG GATGAAATGTCCGAA stu1508 1329669 - 1329770 + | hypothetical protein TERM 1704 1329847 - 1329835 - f 72 -4.8 -4.78848 | opp_overlap 1329835 TGTGTAAACACAAAA CGGA ATAAA TCCG TTATAGTTGATAAAA TERM 1705 1329909 - 1329865 - f 100 -10.4 -5.26918 | opp_overlap 1329869 1329874, overlap 1329869 1329874 ATAGTTGATAAAAAA TAAATAAAATGCTAACATTT AATAA AAGTGTTAGCATTTTATTTC TGACGAAAGGATAGT TERM 1706 1329905 - 1329869 - f 100 -11.2 -5.13354 | opp_overlap 1329869 1329874, overlap 1329865 1329874 TTGATAAAAAATAAA TAAAATGCTAACATTT AATAA AAGTGTTAGCATTTTA TTTCTGACGAAAGGA TERM 1707 1329869 - 1329905 + F 100 -13.4 -3.85698 | opp_overlap 1329869 1329865 1329874, overlap 1329874 TTGATAAAAAATAAA TAAAATGCTAACATTT AATAA AAGTGTTAGCATTTTA TTTCTGACGAAAGGA TERM 1708 1329874 - 1329900 + F 95 -8.9 -4.99043 | opp_overlap 1329869 1329865 1329874, overlap 1329869 AAAAAATAAATAAAA TGCTAACATTT AATAA AAGTGTTAGCA TTTTATTTCTGACGA TERM 1709 1329900 - 1329874 - f 85 -6.7 -5.3472 | opp_overlap 1329874 1329869, overlap 1329869 1329865 AAAAAATAAATAAAA TGCTAACATTT AATAA AAGTGTTAGCA TTTTATTTCTGACGA stu1509 1329931 - 1330521 + | hypothetical protein stu1510 1330521 - 1330847 + | hypothetical protein TERM 1710 1331084 - 1331034 - T 100 -12.3 -4.12188 | gap 1, opp_overlap 1331046, overlap 1331046 TCATCAGTTGGAAAA GAAGATTAAAAAGTAGCTGAGCAA GAGA TTGTTCAGCTACTTTTTAATAT-C TGCCGATGAAATTAT TERM 1711 1331046 - 1331073 + T 100 -13.6 -4.84527 | opp_overlap 1331046 1331034 AAAGAAGATTAAAAA GTAGCTGAGCAA GAGA TTGTTCAGCTAC TTTTTAATATCTGCC TERM 1712 1331073 - 1331046 - T 100 -11.4 -4.94672 | opp_overlap 1331046, overlap 1331034 AAAGAAGATTAAAAA GTAGCTGAGCAA GAGA TTGTTCAGCTAC TTTTTAATATCTGCC stu1511 1331933 - 1331070 - | MutR family transcriptional regulator TERM 1713 1332220 - 1332260 + H 75 -7 -4.24342 | gap 1, overlap 1332222 TATCTAAGTGTATTG TAGCGTGCAGAGTACGATT TTGA GATTA-ACTCTGCACGCTG TTTCTTGATGGAGAA TERM 1714 1332222 - 1332258 + H 73 -7.4 -3.72374 | gap 1, overlap 1332220 TCTAAGTGTATTGTA GCGTGCAGAGTACGATT TTGA GATTA-ACTCTGCACGC TGTTTCTTGATGGAG stu1512 1332282 - 1333577 + | hypothetical protein TERM 1715 1333875 - 1333887 + G 71 -6.3 -4.29369 | opp_overlap 1333875, overlap 1333885 AAAAAGACTAGAGTA TTCAG CAT CTGAA TTTAATTCTTTTTTA TERM 1716 1333885 - 1333895 + G 71 -4 -5.00616 | opp_overlap 1333875, overlap 1333875 GAGTATTCAGCATCT GAAT TTA ATTC TTTTTTAACCCAAGA stu1513 1333579 - 1335150 + | peptide-2 ABC transporter ATP binding/membrane-spanning protein TERM 1717 1335251 - 1335224 - f 76 -4.2 -5.04385 | opp_overlap 1335224 1335226, overlap 1335226 TAGATGGTTAAAAAA CTTTATCTGAAT CTAA ATTCGGATAATG TTTTTTATTTGCCTT TERM 1718 1335224 - 1335251 + F 89 -6.4 -5.67283 | opp_overlap 1335224 1335226, overlap 1335226 TAGATGGTTAAAAAA CTTTATCTGAAT CTAA ATTCGGATAATG TTTTTTATTTGCCTT TERM 1719 1335226 - 1335249 + F 81 -7.6 -4.45696 | opp_overlap 1335226 1335224, overlap 1335224 GATGGTTAAAAAACT TTATCTGAAT CTAA ATTCGGATAA TGTTTTTTATTTGCC stu1514 1335432 - 1335863 + | hypothetical protein stu1515 1335890 - 1336258 + | hypothetical protein stu1516 1336751 - 1336287 - | hypothetical protein TERM 1720 1337851 - 1337884 + G 83 -11.9 -3.16437 | gap 1, opp_overlap 1337850 1337849 1337853 1337858 1337863, overlap 1337858 TATATTTACCAAATC GATTACAGCACAGGCC AGT GGCCT-TGCTTTAATC TCTTGGCGTTTTGTC TERM 1721 1337858 - 1337877 + G 77 -8.6 -3.93262 | gap 1, opp_overlap 1337858 1337853 1337850 1337849 1337863, overlap 1337851 ACCAAATCGATTACA GCACAGGCC AGT GGCCT-TGC TTTAATCTCTTGGCG stu1517 1337768 - 1338658 + | hypothetical protein TERM 1722 1338691 - 1338655 - T 73 -3.8 -5.06414 | opp_overlap 1338661, overlap 1338656 1338661 TGTGGCTAATAAAAA TTAAAACTCTTGGAAA TTTAT CCTCCAAGAGTTTTTT GCTGTCAATCAAGTT TERM 1723 1338661 - 1338685 + T 84 -5.8 -5.22312 | opp_overlap 1338656 1338655 1338661 TAATAAAAATTAAAA CTCTTGGA AATTTATCC TCCAAGAG TTTTTTGCTGTCAAT TERM 1724 1338685 - 1338661 - T 88 -7.2 -4.86293 | opp_overlap 1338661, overlap 1338656 1338655 TAATAAAAATTAAAA CTCTTGGAAA TTTAT CCTCCAAGAG TTTTTTGCTGTCAAT stu1518 1338947 - 1338696 - | hypothetical protein TERM 1725 1339090 - 1339102 + r 100 -9.1 -5.93809 | AACTTGAAAAGGTGG CACCG ATT CGGTG TTTTTTTTATACACA TERM 1726 1339147 - 1339120 - R 100 -15 -4.12532 | opp_overlap 1339120 TTTTTTATACACAAA GAGTCCCTTGGA ATCA TCCAAAGGACTC TTTTATCTCTACTAT TERM 1727 1339120 - 1339147 + r 100 -12.8 -4.63586 | opp_overlap 1339120 TTTTTTATACACAAA GAGTCCCTTGGA ATCA TCCAAAGGACTC TTTTATCTCTACTAT serB 1339806 - 1339159 - | phosphoserine phosphatase TERM 1728 1339888 - 1339911 + r 100 -9.6 -4.33417 | opp_overlap 1339888 AGGTTCTTCAAAAAA GATTCTGGAC CTAG GCCCAGAATC TTTCTTCTACATACG TERM 1729 1339911 - 1339888 - R 100 -11.8 -5.00884 | opp_overlap 1339888 AGGTTCTTCAAAAAA GATTCTGGAC CTAG GCCCAGAATC TTTCTTCTACATACG ezrA 1341612 - 1339918 - | septation ring formation regulator EzrA TERM 1730 1340620 - 1340659 + g 71 -3.7 -4.88918 | gap 1, opp_overlap 1340623 1340625, overlap 1340623 1340633 ATCGAAAATGTAAGT CAACATGAGACGCTCAAG CTCTT CTTGAA-GTTTCTTGTTG TTTTCTTTAGCATGC TERM 1731 1341213 - 1341223 + g 72 -3.2 -5.01823 | opp_overlap 1341198, overlap 1341198 GTGCGTGTTTAACAC GAGC ACT GTTC TTTTCTTCTTGTTCT gyrB 1343691 - 1341739 - | DNA gyrase subunit B TERM 1732 1342947 - 1342963 + g 70 -5.9 -4.4773 | TGTAGATAGGCTCAT CAAAGAT AAC GTCTTTG TTTTCATTGATGTAC TERM 1733 1343397 - 1343408 + g 89 -5.8 -5.49234 | opp_overlap 1343383 1343396 ATACTGTCTCAACAG CAGG ACGA CCTG TTTTTTCTTGAATAT stu1522 1344297 - 1343692 - | HAD superfamily hydrolase TERM 1734 1344329 - 1344307 - R 83 -7 -4.70659 | opp_overlap 1344307 TTTCATAGCTAAAAA GGCTTGGAAA ACC TATCCAAACC TTAATTTTTTATCTC stu1523 1345060 - 1344338 - | hypothetical protein TERM 1735 1344402 - 1344388 - GR 70 -4.2 -4.70534 | opp_overlap 1344388 TAAAGACATATAAAA TCCCTG TTA CAGCGA TTGATAGACCACCCA stu1524 1345424 - 1345026 - | hypothetical protein TERM 1736 1345539 - 1345522 - R 93 -7.7 -5.47431 | opp_overlap 1345522 TTAACACATAAAAAA TCCAACC CCGA GGCTGGA TTCATTCACAGATGC stu1525 1346033 - 1345680 - | hypothetical protein stu1526 1346295 - 1346068 - | methylguanine-DNA methyltransferase, truncated TERM 1737 1346604 - 1346582 - R 88 -7.8 -5.07053 | AATTATTCCAAAAAA GACAGGAA AGCCTTG TTCCTGTC AGCTTATTTCTGAAT serA 1347797 - 1346619 - | D-3-phosphoglycerate dehydrogenase TERM 1738 1347260 - 1347248 - G 75 -7.7 -4.0162 | CTTTGAGATCAGAAA CACGT TTA ACGTG GTGAGAAATATTCCA stu1528 1348373 - 1347816 - | acetyltransferase TERM 1739 1348231 - 1348243 + g 74 -6.3 -4.39329 | opp_overlap 1348229 1348231 TGTCCTTTAAGAACA TCATC AAA GATGA TTTCTTCTGTAGGAT serC 1349479 - 1348385 - | phosphoserine aminotransferase TERM 1740 1349413 - 1349434 + g 78 -7.3 -4.33274 | AGTTAAGCAATTCAG CTTGTGCTT TTTC GAGCACAGG TTTTGGTAATGTAGC TERM 1741 1349574 - 1349555 - R 85 -6.4 -5.27779 | GTTAATAGTAAAAAA CGAACGGA ATTG CCCATTCG TCACAAAAAAGTTAG stu1530 1350295 - 1349633 - | transcriptional regulator, truncated stu1531 1350539 - 1350276 - | transcriptional regulator, truncated gloA 1350585 - 1350980 + | glyoxalase I/lactoylglutathione lyase TERM 1742 1350981 - 1351022 + T 79 -4.6 -5.22768 | opp_overlap 1350981 TTCTTGGAAAAATAA TGAAAAAGAAGTCAGATT ATCTCA ACTCTGGCTCCTTTTTTA TTTATTTTTTATTAT stu1533 1351542 - 1351024 - | hypothetical protein TERM 1743 1351250 - 1351238 - G 70 -7.7 -3.6806 | opp_overlap 1351237 1351238 1351248 ATAGATTCAGCTAAA CCATC AAC GATGG CTTTACGTTGTTGGG stu1534 1351773 - 1351597 - | hypothetical protein TERM 1744 1352076 - 1352039 - R 100 -20.9 -2.8294 | opp_overlap 1352039, overlap 1352041 1352044 GAGCTTTGACAATCA TACAAGAGGCTGAAACA CTAG CGTTTCAGCCTCTTGTA TTTTGTGACTAAGCT TERM 1745 1352039 - 1352076 + r 100 -20.2 -4.42653 | opp_overlap 1352039 1352041 1352044 GAGCTTTGACAATCA TACAAGAGGCTGAAAC ACTAGC GTTTCAGCCTCTTGTA TTTTGTGACTAAGCT TERM 1746 1352074 - 1352041 - R 100 -19.1 -2.96274 | opp_overlap 1352039, overlap 1352039 1352044 GCTTTGACAATCATA CAAGAGGCTGAAACA CTAG CGTTTCAGCCTCTTG TATTTTGTGACTAAG TERM 1747 1352071 - 1352044 - R 100 -15 -3.62644 | opp_overlap 1352039, overlap 1352041 1352039 TTGACAATCATACAA GAGGCTGAAACA CTAG CGTTTCAGCCTC TTGTATTTTGTGACT potD 1353191 - 1352121 - | putrescine/spermidine ABC transporter subtrate-binding protein potC 1353984 - 1353181 - | spermidine/putrescine ABC transporter permease potB 1354772 - 1353957 - | spermidine/putrescine ABC transporter permease potA 1355889 - 1354735 - | putrescine/spermidine ABC transporter ATP-binding protein TERM 1748 1355740 - 1355697 - GR 85 -8.9 -4.18018 | overlap 1355700 GCTTTCCATCCAAAA GAACGTCACCACTGGTCGC ATCTAA GAGACCAGCAATGATGTTC AAGATAGTTGATTTA murB 1356911 - 1355934 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1749 1357012 - 1356992 - R 76 -4 -5.2422 | AATTATAGCAAAAAA TCCCTATC TTGAC GACAAGGA ATTTTAGTAAAAACT folK 1357517 - 1357026 - | hydroxymethylpterin pyrophosphokinase TERM 1750 1357065 - 1357079 + g 85 -5.8 -5.27923 | GACATCACTAGTGTC TATTTG ACT CAAATA TTTTTTGTAGGCTTG TERM 1751 1357160 - 1357148 - G 74 -6.3 -4.4773 | GCAGAGGAACCAAAA CAAAG GCC CTTTG AGTCATGAGAGGATG folQ 1357873 - 1357514 - | dihydroneopterin aldolase amyL 1358070 - 1359545 + | cytoplasmic alpha-amylase TERM 1752 1359565 - 1359553 - T 83 -4.8 -5.54885 | opp_overlap 1359545 1359553, overlap 1359546 AAGACTAAGAAAAAA GCTC GATTT GAGC TTTTTTTAATTTCAT TERM 1753 1359553 - 1359565 + T 86 -5.5 -5.73563 | opp_overlap 1359553 1359546, overlap 1359545 AAGACTAAGAAAAAA GCTCG ATT TGAGC TTTTTTTAATTTCAT folP 1360377 - 1359577 - | dihydropteroate synthase TERM 1754 1360354 - 1360338 - G 70 -8.7 -3.33315 | opp_overlap 1360337 1360338 TCAAGATTCCCATAA TGCAGGC CTT ACCTGCA ATTTCATGTTTACCA folE 1360969 - 1360406 - | GTP cyclohydrolase I stu1545 1362959 - 1361115 - | hypothetical protein TERM 1755 1362766 - 1362755 - G 75 -5.8 -4.70319 | GGACTAAAACCAAAA TCCC AATT GGGA TAGACCACCAAATAG folC2 1364285 - 1363023 - | folylpolyglutamate synthase / dihydrofolate synthase TERM 1756 1364425 - 1364408 - R 86 -5.5 -5.63645 | CCAAAATATAAAAAA GGCAACC CTAG GGTCACC TCTTAAGCTTTCTCT stu1547 1364676 - 1364428 - | hypothetical protein rpsP 1364960 - 1364688 - | 30S ribosomal protein S16 TERM 1757 1364998 - 1365014 + H 75 -8 -3.77219 | TTTTTTATTATGGTG GAGGCA CTTAC TGCCTC TTTACCTTAACTAGT TERM 1758 1365108 - 1365092 - H 74 -3 -5.24531 | overlap 1365093 ATTTTCTACAAAAAA CTAGAG ACAAA CTCTAA CTTCCTTATAGGACT TERM 1759 1365310 - 1365270 - H 100 -17.9 -5.19328 | ATTTCATAATAAAAA CACCCCAAAAGTTAGAC TTTCTCT ATCTAACTTTTGGGGTG CAGTTCAAGTTTGAC tehB 1365393 - 1366271 + | tellurite resistance protein TehB TERM 1760 1366357 - 1366320 - f 80 -9.5 -3.57792 | opp_overlap 1366320 1366327, overlap 1366327 TGACTTATCTTCAAA TTAAAAACTAGAAATCC AGCT AAATTTCTAGTTTTCAA TTGTTTACAATATCT TERM 1761 1366350 - 1366327 - f 77 -5.4 -4.98531 | opp_overlap 1366327 1366320, overlap 1366320 TCTTCAAATTAAAAA CTAGAAATCC AGCT AAATTTCTAG TTTTCAATTGTTTAC TERM 1762 1366457 - 1366467 + F 82 -4.6 -5.55664 | GAGTAAAGAACAATG GGCG TTT CGTC TTTTTTTAGTCGTAA TERM 1763 1367276 - 1367289 + F 80 -2.5 -5.66868 | opp_overlap 1367276 ACCAAAAACAAATCA TAAAT GCAT ATTTA TTTTTTTCATTGATT exoA 1367425 - 1368252 + | 3'-exo-deoxyribonuclease TERM 1764 1368297 - 1368281 - f 76 -6.6 -4.59853 | opp_overlap 1368281 1368276 CTAATCCCCTAAAAA GAGTAG AACCG CTACTC TTTTACTTTACCCAA TERM 1765 1368281 - 1368297 + F 76 -6.6 -4.54727 | opp_overlap 1368281, overlap 1368276 CTAATCCCCTAAAAA GAGTAG AACCG CTACTC TTTTACTTTACCCAA stu1551 1368326 - 1368805 + | hypothetical protein TERM 1766 1368837 - 1368816 - T 100 -13.1 -5.38958 | ACTGATAAACAAAAA CATCTCTGC AATT GCAGAGATG TCAGAATAAAGACAA TERM 1767 1368846 - 1368875 + T 90 -8 -5.0916 | opp_overlap 1368848 1368854, overlap 1368848 AGAGATGTCAGAATA AAGACAAACATC AAAAAC GATGTTTGTCTC TTTTTATATTCACAC TERM 1768 1368848 - 1368873 + T 100 -10.6 -4.17211 | opp_overlap 1368848 1368854, overlap 1368846 AGATGTCAGAATAAA GACAAACATC AAAAAC GATGTTTGTC TCTTTTTATATTCAC TERM 1769 1368873 - 1368848 - T 100 -11.3 -4.32579 | opp_overlap 1368848 1368846, overlap 1368854 AGATGTCAGAATAAA GACAAACATCA AAAA CGATGTTTGTC TCTTTTTATATTCAC stu1552 1369563 - 1368925 - | hypothetical protein TERM 1770 1369677 - 1369703 + r 81 -8 -4.22678 | opp_overlap 1369677 TTCAAATCAATAAAA GTCCCCAGAAGT ATA ACTTCTAAGGAC TTTGTCTTCAATCTG TERM 1771 1369703 - 1369677 - R 100 -12.4 -4.84642 | opp_overlap 1369677 TTCAAATCAATAAAA GTCCCCAGAAGT ATA ACTTCTAAGGAC TTTGTCTTCAATCTG stu1553 1370767 - 1369754 - | putative lipid kinase ligA 1372735 - 1370777 - | NAD-dependent DNA ligase LigA TERM 1772 1371249 - 1371260 + g 70 -3 -5.14626 | opp_overlap 1371244 AAACCATAGAGCAGT TTCT CTGC AGAA TTTTCTTTTGATGCT TERM 1773 1372780 - 1372767 - R 91 -4.5 -5.77632 | opp_overlap 1372767 AAAAGCAGAAAAAAA CGCCT TTAC AGACG TTAATTTAAGAAACA stu1555 1373307 - 1372786 - | hypothetical protein TERM 1774 1373375 - 1373354 - R 83 -8 -4.31379 | opp_overlap 1373352 1373354 ACTAATCCATCAAAA GAGCCTGG GCTTAG CCAAGCTC TCTTTATGCTCTATG stu1556 1374351 - 1373386 - | tRNA-processing ribonuclease BN,putative pepM 1375213 - 1374353 - | methionine aminopeptidase stu1558 1376555 - 1375257 - | hypothetical protein stu1559 1377117 - 1376530 - | acetyltransferase TERM 1775 1377134 - 1377111 - G 82 -6 -4.84529 | TTAGAAATGGAAAAA GGCTCAACCA CTAG CGGTTAAACC TTAGACTTAATCTTC murZ 1378412 - 1377141 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 1776 1377412 - 1377430 + g 72 -4.6 -4.72272 | TGATTTACACGCTTC TCATAGAT CGT ATCAATGA TTTTTCCTCGGCCAC TERM 1777 1377622 - 1377636 + g 76 -4.3 -5.13016 | ATAAAACTTTCAAGG TGTTC ATAGA GAACA TTTTTAATTTTAATT comEC 1380729 - 1378489 - | late competence protein required for DNA uptake TERM 1778 1380466 - 1380488 + g 80 -6.2 -4.68511 | overlap 1380468 ATCTGCAACCAGTGT CACCTGATGA ATT TCAGCAGGAG TTTGTTTATCTTGCA comEA 1381414 - 1380719 - | late competence protein required for DNA binding and uptake TERM 1779 1381513 - 1381488 - R 95 -6.2 -6.20267 | opp_overlap 1381499 TCAAAAAGAAAAAAA CTCCATCAGA TCTATG TCTGACAGAG TTATTAGCCTATTTC stu1563 1382277 - 1381522 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative stu1564 1382477 - 1383010 + | peptidoglycan GlcNAc deacetylase, truncated stu1565 1383055 - 1383342 + | peptidoglycan GlcNAc deacetylase, truncated TERM 1780 1383353 - 1383370 + F 88 -7.7 -5.15634 | opp_overlap 1383346 1383355, overlap 1383346 AGTAATCACTCGCAA CAGTTCC TTTG GGAGCTG TTTTTTGCTACAATA TERM 1781 1383651 - 1383629 - g 73 -8.4 -3.63515 | opp_overlap 1383629 1383617 GTTGAGCTGCAAGAA CGCCTGGC TGATATG GCCAAGCG TTCCGTAACTCTTAA stu1566 1383392 - 1384156 + | hypothetical protein stu1567 1384160 - 1384429 + | hypothetical protein TERM 1782 1384405 - 1384446 + T 73 -8.9 -3.24017 | opp_overlap 1384415, overlap 1384407 1384408 1384415 GAAAAAATTGGCCTA TATCAAAGAACACACGG AAAAATAA CCGTGTGTTTTTTGGTC TTGAATTATCAAATT TERM 1783 1384407 - 1384444 + T 87 -11.5 -3.18054 | opp_overlap 1384415, overlap 1384405 1384408 1384415 AAAAATTGGCCTATA TCAAAGAACACACGG AAAAATAA CCGTGTGTTTTTTGG TCTTGAATTATCAAA TERM 1784 1384408 - 1384443 + T 86 -12.8 -2.50511 | opp_overlap 1384415, overlap 1384407 1384405 1384415 AAAATTGGCCTATAT CAAAGAACACACGG AAAAATAA CCGTGTGTTTTTTG GTCTTGAATTATCAA TERM 1785 1384436 - 1384415 - T 73 -7.3 -4.04806 | opp_overlap 1384415 1384408 1384407 1384405 GCCTATATCAAAGAA CACACGG AAAAATAA CCGTGTG TTTTTTGGTCTTGAA TERM 1786 1384415 - 1384436 + T 89 -7.3 -5.27779 | opp_overlap 1384415, overlap 1384408 1384407 1384405 GCCTATATCAAAGAA CACACGG AAAAATAA CCGTGTG TTTTTTGGTCTTGAA TERM 1787 1384718 - 1384701 - T 93 -7.7 -5.68438 | opp_overlap 1384700 TTAGTAAATAAAAAA GACACCC TGCA AGGTGTC CTGAATTATATCCGC TERM 1788 1384976 - 1384958 - T 89 -8.9 -4.37534 | opp_overlap 1384953 1384958 AAAGGTATAGGAAAA CGCTCTA TTTTT TAGAGCG TTTTAATTCTTACTT TERM 1789 1384958 - 1384976 + T 89 -8.9 -4.58644 | opp_overlap 1384958, overlap 1384953 AAAGGTATAGGAAAA CGCTCTA TTTTT TAGAGCG TTTTAATTCTTACTT rheA 1386572 - 1384986 - | ATP-dependent RNA helicase corA1 1387671 - 1386763 - | CorA cation transporter (MIT) family protein TERM 1790 1386850 - 1386840 - G 70 -5.4 -4.45077 | CAAAAACGATGAAAA TCCA GGC TGGA CTGACAGTCATAAAA stu1570 1388065 - 1387685 - | hypothetical protein TERM 1791 1388352 - 1388331 - H 77 -3.1 -5.41143 | gap 1, opp_overlap 1388309, overlap 1388333 1388334 GATGTGGCAAAAAAA TAGCCAATCA AGA CGATTGG-TA TAGGAGGTTTTTTAT stu1571 1388366 - 1388941 + | hypothetical protein TERM 1792 1388983 - 1388944 - f 74 -3 -5.2853 | gap 1, opp_overlap 1388948 1388966, overlap 1388948 TACGGAAAAATAAAA GAAACCATAGGACAGTC TTAAGTG GAA-GTCCTATGGTTTT TCATGTTTTTATGAG TERM 1793 1388948 - 1388979 + F 77 -5.1 -5.02231 | opp_overlap 1388944 1388948, overlap 1388966 GAAAAATAAAAGAAA CCATAGGACAGTC TTAAGT GGAAGTCCTATGG TTTTTCATGTTTTTA TERM 1794 1388979 - 1388948 - f 73 -3.8 -5.098 | gap 1, opp_overlap 1388948 1388966, overlap 1388944 GAAAAATAAAAGAAA CCATAGGACAGTC TTAAGTG GAA-GTCCTATGG TTTTTCATGTTTTTA TERM 1795 1389042 - 1389014 - f 89 -11.9 -3.3071 | opp_overlap 1389013 1389010 ATATTACGACACGAA GTCAGACGAAT CGATATT ATTCGTCTGAC GTAGTTAGTGAGACG TERM 1796 1389883 - 1389899 + G 73 -7.3 -4.07568 | CTTAGATGTGTTGAA CCATGAG ACT CTTATGG TTTTGGCAAAGGAGA stu1572 1389392 - 1390255 + | MutR family transcriptional regulator stu1573 1390372 - 1391550 + | hypothetical protein TERM 1797 1391588 - 1391627 + T 100 -15.4 -3.68435 | opp_overlap 1391593, overlap 1391593 ACTATTAGGTTTATA AAAAATATAGGACTATCT GATT AGATAGTCCTATATTTTG TGTTATTTTAGAGAC TERM 1798 1391622 - 1391593 - T 100 -15.3 -5.252 | opp_overlap 1391588 1391593 TAGGTTTATAAAAAA TATAGGACTATCT GATT AGATAGTCCTATA TTTTGTGTTATTTTA TERM 1799 1391593 - 1391622 + T 100 -15.3 -4.88288 | opp_overlap 1391593, overlap 1391588 TAGGTTTATAAAAAA TATAGGACTATCT GATT AGATAGTCCTATA TTTTGTGTTATTTTA TERM 1800 1391709 - 1391681 - T 89 -11.9 -3.3071 | opp_overlap 1391677 ATATTACGACACGAA GTCAGACGAAT CGATATT ATTCGTCTGAC GCAGTTAGTGAGACG TERM 1801 1391783 - 1391760 - T 78 -7.6 -4.11216 | gap 1, opp_overlap 1391760 GGGCTAGCGTCAAAA GATGAACGATT TAA AATCGT-CATC TTTTGTGCCGTATTA TERM 1802 1391760 - 1391783 + T 81 -7.6 -4.42619 | gap 1, opp_overlap 1391760 GGGCTAGCGTCAAAA GATGAACGATT TAA AATCGT-CATC TTTTGTGCCGTATTA prfC 1393340 - 1391796 - | peptide chain release factor 3 TERM 1803 1393685 - 1393643 - R 85 -6.5 -5.28281 | gap 1, opp_overlap 1393652 ATAAAACAAATAAAA TGACAAAAACATGCTATCAG CTTT CTGATGGCGTGTTTCT-TCA TTTATTCAATACTTA TERM 1804 1393652 - 1393677 + r 100 -10.5 -4.45386 | opp_overlap 1393643 ATAAAATGACAAAAA CATGCTATCAG CTTT CTGATGGCGTG TTTCTTCATTTATTC stu1575 1394356 - 1393691 - | hypothetical protein TERM 1805 1394435 - 1394419 - R 90 -8 -4.99134 | AGGGTAAATCAAAAA CCTGCT TAGAG AGCAGG TTAGAGAACTTAATC murF 1395818 - 1394445 - | UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase stu1577 1396065 - 1396658 + | hypothetical protein stu1578 1396627 - 1397169 + | hypothetical protein TERM 1806 1397365 - 1397309 - T 81 -6.2 -4.97666 | gap 2, opp_overlap 1397313 1397315 1397318, overlap 1397318 AAGAGACTATAAAAA CAAGTAAAACCACTCCTGCTTCTAGCTA GAC TAGATATAAGCAGGAGTGGTTGT--TTA TTTTTATTAAGCAAG TERM 1807 1397313 - 1397365 + T 100 -11 -5.06414 | gap 2, opp_overlap 1397309 1397318, overlap 1397315 1397318 GACTATAAAAACAAG T-AA-AACCACTCCTGCTTCTAGCTA GAC TAGATATAAGCAGGAGTGGTTGTTTA TTTTTATTAAGCAAG TERM 1808 1397315 - 1397361 + T 100 -16.8 -5.05606 | opp_overlap 1397309 1397318, overlap 1397313 1397318 CTATAAAAACAAGTA AAACCACTCCTGCTTCTAGCTA GAC TAGATATAAGCAGGAGTGGTTG TTTATTTTTATTAAG TERM 1809 1397358 - 1397318 - T 100 -18.5 -4.70739 | opp_overlap 1397315 1397313 1397318, overlap 1397309 TAAAAACAAGTAAAA CCACTCCTGCTTCTAGCTA GAC TAGATATAAGCAGGAGTGG TTGTTTATTTTTATT TERM 1810 1397318 - 1397358 + T 100 -18.5 -4.5815 | opp_overlap 1397318 1397309, overlap 1397315 1397313 TAAAAACAAGTAAAA CCACTCCTGCTTCTAGCTA GAC TAGATATAAGCAGGAGTGG TTGTTTATTTTTATT stu1579 1398262 - 1397408 - | polar amino acid ABC uptake transporter substrate binding protein stu1580 1399126 - 1398305 - | polar amino acid ABC uptake transporter ATP-binding protein TERM 1811 1399013 - 1399025 + gr 71 -4.8 -4.64598 | opp_overlap 1399022 TTTGAGAATTTGATT GTCC CCAAA GGAC TTTTTCAAATCCTTA stu1581 1399760 - 1399065 - | polar amino acid ABC uptake transporter membrane-spanning protein stu1582 1400382 - 1399702 - | polar amino acid ABC uptake transporter membrane-spanning protein TERM 1812 1400354 - 1400335 - GR 72 -5.8 -4.44355 | gap 1, overlap 1400337 TAAGGTTAAAAAGAA TG-CCTTCT GAT AGAAGGGCA AATACTGTTGAACAA TERM 1813 1400684 - 1400649 - R 100 -14.2 -6.02919 | opp_overlap 1400647 1400645 1400649 CTATAAAGAAAAAAA CATCTCAATCTCAGAG ATTT CTCCGAGACTAAGATG TCTGTCTTATAAATC ddl 1401753 - 1400707 - | D-alanyl-alanine synthetase A TERM 1814 1401901 - 1401888 - R 85 -4.5 -5.72616 | opp_overlap 1401876 1401888 ATGGACAGAAAAAAA CAGCC CAAG AGCTG TTTCATTCCTGTCTT copZ 1402118 - 1401915 - | putative copper chaperone - Cu2+-Cu+-Ag+-P-type ATPase copA 1404421 - 1402193 - | Cu2+-Cu+-Ag+-P-type ATPase copY 1404856 - 1404425 - | negative transcriptional regulator - copper transport operon TERM 1815 1404689 - 1404671 - G 71 -6.6 -4.128 | overlap 1404672 AGCTTGATAGATAAA CCCGCGTC CTT GACGCTGA CTAGTTAGGTAACCT TERM 1816 1404992 - 1404972 - R 100 -10.5 -4.7254 | opp_overlap 1404969 1404972 1404974 ATTTTTGATGAAAAA TACTCCCCA TTC TGGAGAGTA TCATCTTCTATTTTT trpA 1405782 - 1405000 - | tryptophan synthase subunit alpha TERM 1817 1405331 - 1405305 - G 75 -10.2 -3.21099 | GTTTCTGACGATCAA TGCCTGTAGTCA AGC TGACCAAAGGCA CGAGAGCAATGTCAC TERM 1818 1405496 - 1405507 + g 84 -2.2 -5.7946 | GTCATGATAACCAAA GGCA CCTG TGTC TTTTTTTCTTGAAGC trpB 1406994 - 1405786 - | tryptophan synthase subunit beta TERM 1819 1406616 - 1406638 + g 72 -9.9 -3.05844 | gap 1, opp_overlap 1406615 1406613 1406612, overlap 1406615 TGTCGAAAAGAGCAG CGGCTGTCGC TGTT GCGACA-CCG TGTTGACCTGCACCA trpF 1407602 - 1406991 - | N-(5'-phosphoribosyl)anthranilate isomerase trpC 1408326 - 1407559 - | indole-3-glycerol-phosphate synthase trpD 1409327 - 1408323 - | anthranilate phosphoribosyltransferase trpG 1409984 - 1409418 - | anthranilate synthase component II trpE 1411351 - 1409981 - | anthranilate synthase component I TERM 1820 1410078 - 1410091 + g 80 -4.5 -5.18355 | ACAACACCTGCACCT GCCTG AACA TAGGC TTTTTGATTTTTGAG TERM 1821 1410811 - 1410797 - G 76 -7.2 -4.16279 | GATATGATTCGAAAA TTGCAA AGC TTGCAA GGCCTGAGGTGTAAA TERM 1822 1411200 - 1411173 - G 76 -9.2 -3.62695 | opp_overlap 1411172 1411173 1411173, overlap 1411168 1411171 TTTTCATAAAGAACA CCGTCCTTGAAG GTTA CTTCAAAGACCG GATTGTAGGCAATAA stu1594 1411703 - 1411413 - | hypothetical protein TERM 1823 1411799 - 1411775 - R 100 -14.4 -5.33921 | opp_overlap 1411772 AAAGTAAGCAAAAAA CCTCACAGAG AAAAA CTCTGTGAGG GCATTAAATCTAGTT TERM 1824 1412179 - 1412165 - R 91 -5.6 -5.8901 | opp_overlap 1412165 1412168 ACACAAAATAAAAAA GCCCCC GAA AGGGAC TTCTTGGGTTGATAA stu1595 1412639 - 1412289 - | hypothetical protein TERM 1825 1412735 - 1412752 + r 71 -8.5 -3.04988 | overlap 1412734 CTTAAGTTTTGCTTT GTGCTTT TTGG AAAGCAC CTTGTTTATAGCTAA ctpE 1415108 - 1412721 - | cation-P-type ATPase TERM 1826 1413868 - 1413854 - G 84 -7.8 -4.69549 | AAGCCAAAATCAAAA CACGAG ATC CTCGCG CCTGAGCCTTATCGA TERM 1827 1414977 - 1414988 + g 73 -5.8 -4.55798 | AAAAATATCCCAATT GCTG GAGC CAGC TTTTGCTTTAAAATA stu1597 1415736 - 1415341 - | hypothetical protein stu1598 1416045 - 1416344 + | hypothetical protein TERM 1828 1416376 - 1416349 - T 82 -8.6 -3.9392 | opp_overlap 1416349 1416355, overlap 1416355 TGCCATTCTAAACAA TAAAAAGGAATC TCAC GATTCCTTTTTC TATATACTCATTTAG TERM 1829 1416349 - 1416376 + T 71 -8.6 -2.99473 | opp_overlap 1416349 1416355, overlap 1416355 TGCCATTCTAAACAA TAAAAAGGAATC TCAC GATTCCTTTTTC TATATACTCATTTAG TERM 1830 1416370 - 1416355 - T 89 -7.6 -5.38549 | opp_overlap 1416349 1416355, overlap 1416349 TCTAAACAATAAAAA GGAATC TCAC GATTCC TTTTTCTATATACTC TERM 1831 1416355 - 1416370 + T 88 -7.6 -5.05601 | opp_overlap 1416355 1416349, overlap 1416349 TCTAAACAATAAAAA GGAATC TCAC GATTCC TTTTTCTATATACTC stu1599 1416792 - 1416502 - | hypothetical protein stu1600 1417638 - 1416898 - | MerR family transcriptional regulator TERM 1832 1417410 - 1417423 + g 85 -6.7 -5.04222 | overlap 1417417 CCTGTTCCCTATTTT CCTCT TGCA AGAGG TTTTTGATTTGATTA dnaQ 1418392 - 1417802 - | DNA polymerase III subunit epsilon TERM 1833 1418413 - 1418437 + r 100 -11.5 -5.79595 | opp_overlap 1418416, overlap 1418416 TCTCCTACAATAGTT AAAGCTGAGAC CGA GTCTCAGCTTC TTTTTTATTTTCCAA TERM 1834 1418434 - 1418416 - R 95 -13.2 -3.79071 | opp_overlap 1418413 1418416 CCTACAATAGTTAAA GCTGAGAC CGA GTCTCAGC TTCTTTTTTATTTTC TERM 1835 1418416 - 1418434 + r 100 -13.2 -4.94109 | opp_overlap 1418416, overlap 1418413 CCTACAATAGTTAAA GCTGAGAC CGA GTCTCAGC TTCTTTTTTATTTTC stu1602 1418978 - 1418442 - | hypothetical protein TERM 1836 1418757 - 1418768 + g 76 -4.4 -5.12172 | TACAAGAATCTCTAA CAAC TCAC GTTG TTTTGTTTCTTCATC TERM 1837 1419348 - 1419370 + H 100 -9.2 -5.7946 | ATAGAGGCACATTAG CTTCAACGGT CTT ACTGTTGGAG TTTTTTTGTTGCCAA stu1603 1419423 - 1419842 + | hypothetical protein TERM 1838 1419878 - 1419845 - T 100 -9.7 -5.07652 | opp_overlap 1419851, overlap 1419846 1419851 GGGCGGAAAATAAAA CCAAAACCGATTGGA CATT TCCAATCGGTTTTTT ATTAAGAAGACAGTG TERM 1839 1419877 - 1419846 - T 95 -13.2 -3.63868 | opp_overlap 1419851, overlap 1419845 1419851 GGCGGAAAATAAAAC CAAAACCGATTGGA CATT TCCAATCGGTTTTT TATTAAGAAGACAGT TERM 1840 1419872 - 1419851 - T 100 -13.1 -4.83677 | opp_overlap 1419851, overlap 1419846 1419845 AAAATAAAACCAAAA CCGATTGGA CATT TCCAATCGG TTTTTTATTAAGAAG TERM 1841 1419851 - 1419872 + T 100 -13.1 -5.4505 | opp_overlap 1419851 1419846 1419845 AAAATAAAACCAAAA CCGATTGGA CATT TCCAATCGG TTTTTTATTAAGAAG TERM 1842 1419939 - 1419974 + T 76 -6.3 -4.53163 | opp_overlap 1419944, overlap 1419944 AAAACTTAGAATCAT AAAAATCACATCGCA CAAATA TACGATGTGATTTTG TTTTATAGTATGTGA TERM 1843 1419969 - 1419944 - T 100 -9.1 -5.01535 | opp_overlap 1419939 1419944 TTAGAATCATAAAAA TCACATCGCAC AAAT ATACGATGTGA TTTTGTTTTATAGTA TERM 1844 1419944 - 1419969 + T 83 -6.2 -5.20781 | opp_overlap 1419944, overlap 1419939 TTAGAATCATAAAAA TCACATCGCA CAAATA TACGATGTGA TTTTGTTTTATAGTA ilvD1 1421708 - 1419990 - | dihydroxy-acid dehydratase TERM 1845 1421863 - 1421889 + G 80 -8.1 -4.36914 | gap 2, overlap 1421860 GGTGGGGGACCTGCT GGCATGATGGCGA CCA TCGCC-TCA-GCC TTTTATGGCCAACAA TERM 1846 1422913 - 1422883 - g 100 -10.4 -5.42514 | opp_overlap 1422883 1422886 CTAGAAAGTAAAAAA GTCCCTCACCTACA TTT TGCAGGAGAGGTAC TTGATATCAATGCCC stu1605 1421821 - 1423002 + | hypothetical protein TERM 1847 1423058 - 1423032 - T 100 -13.8 -4.67011 | opp_overlap 1423032 1423048 AACTCTACCCAAAAA GTGTCCCTTCTA TGC TGGAAGGGACAC TTTGTCTATTTCTGA TERM 1848 1423032 - 1423058 + T 100 -16 -4.31166 | opp_overlap 1423032, overlap 1423048 AACTCTACCCAAAAA GTGTCCCTTCTA TGC TGGAAGGGACAC TTTGTCTATTTCTGA trmB 1423879 - 1423238 - | tRNA (guanine-N(7))-methyltransferase stu1607 1424680 - 1423889 - | hypothetical protein TERM 1849 1424363 - 1424343 - G 76 -6.9 -4.46656 | TGTAGAAGATCAAAA GGATTTTCA ATA TGATAATCC AACTGCAAGAGCTGA TERM 1850 1424402 - 1424428 + g 71 -7.5 -3.96093 | gap 1, opp_overlap 1424409 GTGTTTAGAGCGGTG CAGATTA-CCAA GAAT TTGGATAATCTG TTTACTGTTCATGTC stu1608 1425775 - 1424738 - | ABC transporter membrane-spanning protein stu1609 1426503 - 1425772 - | ABC transporter ATP binding protein TERM 1851 1426786 - 1426770 - g 77 -6.5 -4.56597 | GCCGTGTTCCAAAAA TTGCTCG TGC CGTGCAA AAAGCAACTGGAGCA hit 1426568 - 1426987 + | cell cycle regulation histidine triad (HIT) protein stu1611 1426984 - 1427292 + | hypothetical protein TERM 1852 1427284 - 1427308 + T 100 -13 -4.29227 | opp_overlap 1427284 GACGATAACGAAAAA GGTAAGTAGC CTCGT GCTACTTACC TTTATTGCTGATTAA TERM 1853 1427308 - 1427284 - T 100 -13 -4.94972 | opp_overlap 1427284 GACGATAACGAAAAA GGTAAGTAGC CTCGT GCTACTTACC TTTATTGCTGATTAA stu1612 1428014 - 1427844 - | hypothetical protein stu1613 1428719 - 1428084 - | hypothetical protein TERM 1854 1429238 - 1429215 - R 95 -6 -6.28401 | opp_overlap 1429214 1429215 1429217 TAAAAAAGAAAAAAA CAGGGATGTC TACT AACATCTCTG CTTCATTAATCGGAT clpL 1431371 - 1429272 - | ATP-dependent proteinase ATP-binding subunit TERM 1855 1429360 - 1429378 + g 90 -9.6 -4.44667 | TTATCCAAGTGGAAG TCTGTGAC TTT GTCACGGA TTTGTTGTTCAACCA TERM 1856 1431640 - 1431665 + r 93 -10.6 -4.02736 | opp_overlap 1431630 TGAAATAAGCTTGTA GCTTAAGGAA ACTCTC TTCCTTAAGC TTTATCATATACCTT TERM 1857 1431795 - 1431817 + r 71 -6.4 -4.27117 | overlap 1431791 1431785 TGTTTTGACAGCCTT CATAAGGA TTTCATT TCCTTATG TTTATATTATACAAC TERM 1858 1431847 - 1431863 + r 79 -3.7 -5.49809 | overlap 1431834 CATTGGTCAGTATTG GTCAATA TAT TTTTGAC TTTTTTTGACCTTTA TERM 1859 1432081 - 1432050 - R 72 -6 -4.28018 | gap 1, opp_overlap 1432057 1432058, overlap 1432040 1432051 1432056 1432058 AATAGTTTACGAAAA GTAAAAGAGCCTACC AGA GGTAGAC-CTTTTAT AAAACTATTTTACTC TERM 1860 1432080 - 1432051 - R 77 -9.5 -3.16088 | gap 1, opp_overlap 1432057 1432058, overlap 1432040 1432050 1432056 1432058 ATAGTTTACGAAAAG TAAAAGAGCCTACC AGA GGTAGAC-CTTTTA TAAAACTATTTTACT TERM 1861 1432075 - 1432056 - R 72 -5 -4.70319 | gap 1, opp_overlap 1432057 1432058, overlap 1432051 1432050 1432058 TTACGAAAAGTAAAA GAGCCTACC AGA GGTAGAC-C TTTTATAAAACTATT TERM 1862 1432074 - 1432058 - R 82 -8.7 -3.95369 | opp_overlap 1432058 1432057, overlap 1432056 1432051 1432050 ACGAAAAGTAAAAGA GCCTACC AGA GGTAGAC CTTTTATAAAACTAT stu1615 1433177 - 1432086 - | hypothetical protein stu1616 1434053 - 1433184 - | hypothetical protein TERM 1863 1434008 - 1433963 - G 86 -9.3 -4.43309 | gap 1, opp_overlap 1433964 1433969, overlap 1433969 TAATTGGAATGAAAA TTAGA-AGCTTTGACTTGGA ATCCTGA TCCAAGCCAAAGCTATCTAT TTTCCGACGATTACA TERM 1864 1433964 - 1434007 + g 88 -10.6 -4.09739 | gap 1, opp_overlap 1433963 1433969, overlap 1433969 AATTGGAATGAAAAT TAGA-AGCTTTGACTTGGA ATCCTGA TCCAAGCCAAAGCTATCTA TTTTCCGACGATTAC TERM 1865 1433969 - 1434001 + g 79 -10.7 -3.26779 | opp_overlap 1433963 1433969, overlap 1433964 GAATGAAAATTAGAA GCTTTGACTTGGA ATCCTGA TCCAAGCCAAAGC TATCTATTTTCCGAC TERM 1866 1434001 - 1433969 - G 95 -12.9 -3.72152 | opp_overlap 1433969 1433964, overlap 1433963 GAATGAAAATTAGAA GCTTTGACTTGGA ATCCTGA TCCAAGCCAAAGC TATCTATTTTCCGAC TERM 1867 1434239 - 1434220 - R 83 -7.2 -4.81082 | opp_overlap 1434220 AATTAAGCAACAAAA CCCAGTTA TCGC TAACTGAG TTCAATTTCTTATGC stu1617 1434602 - 1434249 - | hypothetical protein stu1618 1435216 - 1434626 - | hypothetical protein nadD 1435845 - 1435213 - | nicotinic acid mononucleotide adenylyltransferase stu1620 1436266 - 1435949 - | hypothetical protein TERM 1868 1436374 - 1436400 + r 73 -8.8 -3.25823 | opp_overlap 1436357 1436369 TTCAAAAATTTCGAA TCCACGTAACAT AGT ATGTTGCTTGGA TTACTATCAGGGCGA stu1621 1437623 - 1436505 - | GTP-binding protein YqeH TERM 1869 1437547 - 1437563 + g 93 -8 -5.40464 | TTTTTAATAGAGCTA GCAGGT GTGAA ACCTGC TTTTTCTTTATCCTC stu1622 1438150 - 1437623 - | hypothetical protein stu1623 1439201 - 1438287 - | drug/metabolite transporter (DMT) superfamily protein TERM 1870 1438426 - 1438412 - G 77 -10 -3.30039 | overlap 1438410 CACCCATAATTAATA CGGTCA AAA TGACCG ATGCTACGGGTTCCA TERM 1871 1439052 - 1439040 - G 72 -3.3 -5.02074 | TGACTGCCTAAAAAA GACCG AAG CTGTC AGCAAAATCCCAGCT stu1624 1439661 - 1439278 - | hypothetical protein TERM 1872 1439764 - 1439716 - R 100 -11.4 -4.20368 | gap 1, opp_overlap 1439725 1439729, overlap 1439725 1439729 CTAGTCTAACACAAA TATTG-CAAATAAAGAACCAACC TTTC GGCTGGTTCTTTATTTATCAATC TTCTTTCAACTTAGC TERM 1873 1439754 - 1439725 - R 100 -14.5 -3.70571 | opp_overlap 1439725 1439729, overlap 1439716 1439729 CACAAATATTGCAAA TAAAGAACCAACC TTTC GGCTGGTTCTTTA TTTATCAATCTTCTT TERM 1874 1439725 - 1439754 + r 100 -12.3 -3.99444 | opp_overlap 1439725 1439716 1439729, overlap 1439729 CACAAATATTGCAAA TAAAGAACCAACC TTTC GGCTGGTTCTTTA TTTATCAATCTTCTT TERM 1875 1439729 - 1439750 + r 89 -8.7 -4.58085 | opp_overlap 1439725 1439716 1439729, overlap 1439725 AATATTGCAAATAAA GAACCAACC TTTC GGCTGGTTC TTTATTTATCAATCT TERM 1876 1439750 - 1439729 - R 100 -10.9 -4.4572 | opp_overlap 1439729 1439725, overlap 1439725 1439716 AATATTGCAAATAAA GAACCAACC TTTC GGCTGGTTC TTTATTTATCAATCT gatB 1441201 - 1439759 - | aspartyl/glutamyl-tRNA amidotransferase subunit B gatA 1442667 - 1441201 - | aspartyl/glutamyl-tRNA amidotransferase subunit A gatC 1442969 - 1442667 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 1877 1443079 - 1443054 - R 93 -6.2 -5.88565 | GGGAGAATAAAAAAA CTGTAGCAAC TTTTTT GTCACTACAG TTTACCAATATACAG stu1628 1443363 - 1443109 - | hypothetical protein stu1629 1443585 - 1443376 - | hypothetical protein TERM 1878 1443500 - 1443479 - G 73 -2.4 -5.20154 | gap 1, overlap 1443481 ACATAACGGAAAAAA GT-CGTATA ATGAA TATACGTAC TCGGAAGCGAAAATT TERM 1879 1443821 - 1443804 - R 79 -4.1 -5.24531 | gap 1, opp_overlap 1443804 ACCCCTTACAAAAAA GCCAGTCC AAA GG-CTGAC TTCAATCGGAGATCA stu1630 1444227 - 1443901 - | 6-phospho-beta-glucosidase, truncated stu1631 1445234 - 1444311 - | 6-phospho-beta-glucosidase, truncated TERM 1880 1445492 - 1445464 - R 71 -6.8 -4.15029 | ATTTCAGACAAAGAA TTGAGAGTAGAA TAACT TCCTACTCTCGA TGATGACTTATTTCC msrA2 1446027 - 1445500 - | methionine sulfoxide reductase A stu1633 1446872 - 1446021 - | putative lipoprotein TERM 1881 1446997 - 1446976 - R 93 -8.1 -5.58074 | GAATTATCAAAAAAA GAGTAAGAA CCAA CTCTTACTC TACAATTGTCGCTCC entB 1447543 - 1446992 - | pyrazinamidase/nicotinamidase, putative TERM 1882 1447591 - 1447567 - R 77 -3.5 -5.40072 | opp_overlap 1447567 CTCCTTTTAAAAAAA GTGGGGCAG CCTCAAC CTACCTCAC TTCTATTCAATGTTT codY 1448391 - 1447606 - | transcriptional repressor CodY TERM 1883 1448639 - 1448618 - R 71 -3 -5.1485 | overlap 1448612 TAAGCAAGATAAAAA CCGAACAA GTCTTT TTGTCCAG TTTTCACGAATTTAG aspC2 1449865 - 1448651 - | aminotransferase AlaT TERM 1884 1448740 - 1448786 + g 79 -6.6 -4.56133 | opp_overlap 1448733 1448734, overlap 1448733 1448734 AGACAATACGGAAGT GGTCCGGTTCATTCCAGTTAAA GCC TTTACCTGGAACCAAGAGGACC TTTTCCTTCTTCAAA stu1637 1450220 - 1450672 + | hypothetical protein TERM 1885 1450698 - 1450686 - f 77 -9.1 -3.30243 | opp_overlap 1450686 AGTCACCTCTCACAA GCACC TAC GGTGC TTTTCTCATATAATA TERM 1886 1450686 - 1450698 + F 93 -9.1 -4.52047 | opp_overlap 1450686 AGTCACCTCTCACAA GCACC TAC GGTGC TTTTCTCATATAATA stu1638 1451006 - 1451260 + | hypothetical protein TERM 1887 1451483 - 1451460 - T 70 -3.8 -5.00895 | opp_overlap 1451460 TTTATCATATAAAAA GAACTGAGTT ATTA ATCTCGGTTC TTTTTCTTGTTCTAT TERM 1888 1451460 - 1451483 + T 84 -6 -5.35721 | opp_overlap 1451460 TTTATCATATAAAAA GAACTGAGTT ATTA ATCTCGGTTC TTTTTCTTGTTCTAT stu1639 1452109 - 1451729 - | hypothetical protein TERM 1889 1452293 - 1452307 + r 71 -6.4 -4.12603 | opp_overlap 1452293 TAACAAAATAAAAAA GCTCTT GTT GAGAGC TTATTCTTTAATCCA TERM 1890 1452307 - 1452293 - R 91 -5.7 -5.92399 | opp_overlap 1452293 TAACAAAATAAAAAA GCTCT TGTTG AGAGC TTATTCTTTAATCCA pflA 1453115 - 1452315 - | pyruvate-formate lyase activating enzyme TERM 1891 1453270 - 1453283 + r 85 -4.5 -5.62045 | opp_overlap 1453263 1453270 1453264 GAAGAAAGGGAAAAA CTGGA TTCT TCCGG TTTTTTATTATCTAT TERM 1892 1454051 - 1454023 - R 76 -3.7 -5.35365 | opp_overlap 1454023 AAAAGATAATAAAAA GCACTTTCAATCC AAA GGAAAGAAGGCGC TCAATTATCATTATC hlyX 1455442 - 1454111 - | hypothetical protein stu1642 1455555 - 1456337 + | ABC transporter ATP binding protein TERM 1893 1456394 - 1456427 + T 95 -11.9 -4.04927 | gap 1, opp_overlap 1456394 1456397 1456398, overlap 1456397 1456398 ACAACATTAAAGAAA CAAG-TCCCCTAGACT ATA AGTCTGGGGGAATTTG TTCTTTCATCATTAC TERM 1894 1456426 - 1456394 - T 82 -7.7 -4.57787 | opp_overlap 1456394 1456397 1456398, overlap 1456397 1456398 ACAACATTAAAGAAA CAAGTCCCCTAGACT ATA AGTCTGGGGGAATTT GTTCTTTCATCATTA TERM 1895 1456397 - 1456423 + T 100 -11.6 -4.60258 | opp_overlap 1456394 1456397 1456398, overlap 1456394 1456398 ACATTAAAGAAACAA GTCCCCTAGACT ATA AGTCTGGGGGAA TTTGTTCTTTCATCA TERM 1896 1456423 - 1456397 - T 93 -9.4 -4.36862 | opp_overlap 1456397 1456394 1456398, overlap 1456394 1456398 ACATTAAAGAAACAA GTCCCCTAGACT ATA AGTCTGGGGGAA TTTGTTCTTTCATCA TERM 1897 1456398 - 1456422 + T 100 -15.1 -3.35071 | opp_overlap 1456397 1456394 1456398, overlap 1456397 1456394 CATTAAAGAAACAAG TCCCCTAGACT ATA AGTCTGGGGGA ATTTGTTCTTTCATC TERM 1898 1456422 - 1456398 - T 91 -12.9 -3.20491 | opp_overlap 1456398 1456397 1456394, overlap 1456397 1456394 CATTAAAGAAACAAG TCCCCTAGACT ATA AGTCTGGGGGA ATTTGTTCTTTCATC TERM 1899 1456909 - 1456933 + T 73 -4.3 -4.95155 | opp_overlap 1456904 1456909 AAGCAAACATTAAAA GAAGCCAAATT AAT AACTTAGCTTC TTTTTCTACTCTAAA TERM 1900 1456933 - 1456909 - T 89 -8.7 -4.52266 | opp_overlap 1456909, overlap 1456904 AAGCAAACATTAAAA GAAGCCAAATT AAT AACTTAGCTTC TTTTTCTACTCTAAA nha 1459022 - 1456956 - | Na+:H+ antiporter stu1644 1459273 - 1459031 - | hypothetical protein TERM 1901 1459234 - 1459249 + g 79 -3.2 -5.35815 | overlap 1459236 TGTCTATATATTTGG CCTGCA TATC TGCAAG TTTTTCTTTAATATC stu1645 1459818 - 1459270 - | rRNA methylase stu1646 1460759 - 1459815 - | hypothetical protein TERM 1902 1460838 - 1460791 - R 100 -13.8 -5.0538 | gap 1, opp_overlap 1460790 1460789 1460793 1460805 CTTTAGTCTAAAAAA GAGAGTAAGACAGAGACAAAATC ATA GATTTC-TGTCTGTCCTACTCTC ACTTCTCATTTAGTC stu1647 1461920 - 1460844 - | putative protease coaD 1462395 - 1461898 - | phosphopantetheine adenylyltransferase stu1649 1462977 - 1462429 - | methyltransferase, putative trxB1 1464039 - 1463119 - | thioredoxin reductase stu1651 1464329 - 1464105 - | hypothetical protein stu1652 1465287 - 1464544 - | polar amino acid ABC uptake transporter ATP-binding protein stu1653 1466258 - 1465287 - | polar amino acid ABC uptake transporter membrane-spanning protein TERM 1903 1466256 - 1466238 - G 70 -8.9 -3.26405 | opp_overlap 1466237 1466235 1466238, overlap 1466235 TCCATCTAAAAAGTA GGTTAGC CAAAC GCTAACC ATCTTTATTTCTTAT TERM 1904 1466325 - 1466349 + r 72 -9.5 -2.65264 | GTCTGTGACATAGTC TTTTCTTATCA TTG TGATAAGGAAA TCATATCACTGATAA TERM 1905 1466407 - 1466388 - R 70 -4.2 -4.67904 | opp_overlap 1466388, overlap 1466391 TATTAACGTCAAAAA GCAGAGAC AAGA GTCTCAAC TTTTCAACTTTTAAC stu1654 1467281 - 1466427 - | polar amino acid ABC uptake transporter substrate binding protein stu1655 1467950 - 1467717 - | hypothetical protein TERM 1906 1468023 - 1468035 + r 89 -3.4 -5.79595 | CTTGACACGTTATGT CGAA GTTGA TTCG TTTTTTCTTTTCAGC dinP 1469351 - 1468248 - | DNA polymerase IV TERM 1907 1469505 - 1469465 - H 77 -5.8 -4.72373 | opp_overlap 1469480 1469482 TCAAAAAAACAGAAA TTTATAATACAGATTT CCAGTTTTC AAAACTGTATTATAAA AGAATGTCTTTAAAA TERM 1908 1469563 - 1469611 + H 100 -18 -3.30124 | gap 1, opp_overlap 1469563 1469565 1469566 1469576, overlap 1469576 TACTGTGTGATATAA TAC-TTCTAGAGAATGTAACAGA TGAT TTTGTTACATTCTCTAGAAAGTA TTATAGGAGATCCAA TERM 1909 1469611 - 1469563 - H 100 -15.8 -3.48593 | gap 1, opp_overlap 1469563 1469576, overlap 1469565 1469566 1469576 TACTGTGTGATATAA TAC-TTCTAGAGAATGTAACAGA TGAT TTTGTTACATTCTCTAGAAAGTA TTATAGGAGATCCAA TERM 1910 1469608 - 1469565 - H 100 -16.4 -3.31726 | opp_overlap 1469563 1469576, overlap 1469563 1469566 1469576 CTGTGTGATATAATA CTTCTAGAGAATGTAACAGA TGAT TTTGTTACATTCTCTAGAAA GTATTATAGGAGATC TERM 1911 1469607 - 1469566 - H 100 -17.7 -2.58822 | opp_overlap 1469563 1469576, overlap 1469565 1469563 1469576 TGTGTGATATAATAC TTCTAGAGAATGTAACAGA TGAT TTTGTTACATTCTCTAGAA AGTATTATAGGAGAT TERM 1912 1469722 - 1469708 - g 76 -3.5 -5.28942 | GACTGGAAAGAAAAA GCAAG TGTGT CTCGC TTCGTACAAGCAAAC pfl 1469630 - 1471939 + | pyruvate formate-lyase TERM 1913 1471950 - 1471969 + F 100 -10 -5.35224 | opp_overlap 1471950 1471953 GATAAAATGAATAAA GAGCTCGC AATA GCGAGTTC TTTTCTTTTTGTAAA TERM 1914 1471969 - 1471950 - f 82 -7.8 -4.48176 | opp_overlap 1471950, overlap 1471953 GATAAAATGAATAAA GAGCTCGC AATA GCGAGTTC TTTTCTTTTTGTAAA cah 1472202 - 1472984 + | carbonate dehydratase stu1659 1473002 - 1473487 + | hypothetical protein TERM 1915 1473476 - 1473517 + T 80 -6.8 -4.65078 | gap 1, opp_overlap 1473482, overlap 1473479 1473482 AAGTCCTTAATAAGT AAAAAAGCTTAAGCAGTAG ATCAA CT-CTGCTTAAGCTTCTTC TTTTGTTGAAAATAT TERM 1916 1473479 - 1473514 + T 89 -8.5 -4.43307 | gap 1, opp_overlap 1473482, overlap 1473476 1473482 TCCTTAATAAGTAAA AAAGCTTAAGCAGTAG ATCAA CT-CTGCTTAAGCTTC TTCTTTTGTTGAAAA TERM 1917 1473511 - 1473482 - T 100 -10.2 -5.37865 | gap 1, opp_overlap 1473479 1473476 1473482 TTAATAAGTAAAAAA GCTTAAGCAGTAG ATCAA CT-CTGCTTAAGC TTCTTCTTTTGTTGA TERM 1918 1473482 - 1473511 + T 100 -10.2 -4.31859 | gap 1, opp_overlap 1473482, overlap 1473479 1473476 TTAATAAGTAAAAAA GCTTAAGCAGTAG ATCAA CT-CTGCTTAAGC TTCTTCTTTTGTTGA TERM 1919 1473796 - 1473757 - T 100 -15.2 -5.626 | opp_overlap 1473757 1473760 CATTTTATAAAAAAA CAACCCCCGTTATCTAAC TATT ATTAGATAATGGGGGCTG TTTTAGTAGTCTTTC TERM 1920 1473757 - 1473796 + T 100 -14.5 -4.37067 | opp_overlap 1473757, overlap 1473760 CATTTTATAAAAAAA CAACCCCCGTTATCTAA CTATTA TTAGATAATGGGGGCTG TTTTAGTAGTCTTTC TERM 1921 1473760 - 1473793 + T 95 -14.8 -2.85364 | opp_overlap 1473757, overlap 1473757 TTTATAAAAAAACAA CCCCCGTTATCTAA CTATTA TTAGATAATGGGGG CTGTTTTAGTAGTCT stu1660 1474144 - 1473839 - | type I restriction-modification system specificty subunit, truncated stu1661 1474453 - 1474163 - | plasmid mobilization protein, truncated stu1662 1474676 - 1474458 - | plasmid mobilization protein, truncated TERM 1922 1474803 - 1474835 + r 89 -8.6 -4.57837 | gap 1, opp_overlap 1474802 1474793 1474805, overlap 1474778 GACAAGCGATGACAG TAGC-GTTTCCCC TTCCTTCT GGGGAAACTGCTA TTTTTCAGCGCCTAT TERM 1923 1475021 - 1474987 - R 74 -3.1 -5.37345 | gap 1, opp_overlap 1474987 1474991 CTTAACCACAAAAAA TAAATTGGGATAG-TA TCGG TATCTATCTCAACTTA TTCTGAGTGTGTATA TERM 1924 1475153 - 1475095 - R 87 -10.1 -4.02108 | gap 1, opp_overlap 1475096 1475096 1475107, overlap 1475096 TTCAGGATAAGGAAA TTTTAATTACAACTACAATTACAGGTGT AACT ATAGCTGTAGTTGTAGTTGTAATTAAA- ATATTTAACCAAAAT TERM 1925 1475153 - 1475096 - R 100 -16.1 -3.00783 | opp_overlap 1475096 1475096 1475107, overlap 1475095 TCAGGATAAGGAAAT TTTAATTACAACTACAATTACAGGTGT AACT ATAGCTGTAGTTGTAGTTGTAATTAAA ATATTTAACCAAAAT TERM 1926 1475096 - 1475153 + r 100 -20.5 -2.60615 | opp_overlap 1475095 1475096, overlap 1475096 1475107 TCAGGATAAGGAAAT TTTAATTACAACTACAATTACAGGTGT AACT ATAGCTGTAGTTGTAGTTGTAATTAAA ATATTTAACCAAAAT TERM 1927 1475096 - 1475154 + r 100 -14.5 -3.34715 | gap 1, opp_overlap 1475095 1475096, overlap 1475096 1475107 TCAGGATAAGGAAAT -TTTAATTACAACTACAATTACAGGTGT AACT ATAGCTGTAGTTGTAGTTGTAATTAAAA TATTTAACCAAAATC TERM 1928 1475107 - 1475142 + r 79 -9.2 -3.52093 | opp_overlap 1475095 1475096, overlap 1475096 1475096 AAATTTTAATTACAA CTACAATTACAGGTGT AACT ATAGCTGTAGTTGTAG TTGTAATTAAAATAT int 1475619 - 1475158 - | integrase/recombinase plasmid associated, putative stu1664 1476525 - 1475839 - | hypothetical protein TERM 1929 1476501 - 1476472 - G 70 -9.3 -3.15861 | TATGAGTGGTACTAA CCAGCCCCAGTAA AACA TTGCTGGAACTGG AACCCAAACCGCTGC stu1665 1477356 - 1476601 - | hypothetical protein stu1666 1478003 - 1477353 - | ABC transporter ATP binding protein stu1667 1479176 - 1478205 - | hypothetical protein cppA 1479928 - 1479161 - | C3-degrading proteinase TERM 1930 1480125 - 1480137 + G 71 -4.8 -4.50218 | opp_overlap 1480125, overlap 1480121 TTTGGCGTTTAGACA TGCC GATCA GGCA TTCTTTTTACTACTT stu1670 1480088 - 1480474 + | hypothetical protein TERM 1931 1480579 - 1480562 - T 71 -8.5 -3.08173 | opp_overlap 1480562 ACTAATCCCATGTAA CTGAGAA AACT TTCTCAG TTTTTGCTACTTTCA TERM 1932 1480562 - 1480579 + T 95 -8.5 -4.84363 | opp_overlap 1480562 ACTAATCCCATGTAA CTGAGAA AACT TTCTCAG TTTTTGCTACTTTCA TERM 1933 1480649 - 1480598 - T 100 -19.2 -4.11216 | opp_overlap 1480604 1480614, overlap 1480599 1480614 TTGCTACTTTCAAAA TTTTAAGCATAAAAAATCTGAAGC ATTT GCTTCAGATTTTTTATGCTTAATT AAAGGTAGAGAGCTT TERM 1934 1480648 - 1480599 - T 100 -22.7 -3.06515 | opp_overlap 1480604 1480614, overlap 1480598 1480614 TGCTACTTTCAAAAT TTTAAGCATAAAAAATCTGAAGC ATTT GCTTCAGATTTTTTATGCTTAAT TAAAGGTAGAGAGCT TERM 1935 1480604 - 1480643 + T 100 -22.6 -3.34895 | opp_overlap 1480599 1480598 1480614, overlap 1480614 CTTTCAAAATTTTAA GCATAAAAAATCTGAAGC ATTT GCTTCAGATTTTTTATGC TTAATTAAAGGTAGA TERM 1936 1480633 - 1480614 - T 100 -10.8 -5.37345 | opp_overlap 1480604 1480614, overlap 1480599 1480598 TTTAAGCATAAAAAA TCTGAAGC ATTT GCTTCAGA TTTTTTATGCTTAAT TERM 1937 1480614 - 1480633 + T 100 -10.8 -5.38249 | opp_overlap 1480614 1480599 1480598, overlap 1480604 TTTAAGCATAAAAAA TCTGAAGC ATTT GCTTCAGA TTTTTTATGCTTAAT gla 1481511 - 1480648 - | glycerol facilitator pepXP 1481632 - 1483899 + | x-prolyl-dipeptidyl aminopeptidase TERM 1938 1483916 - 1483942 + T 95 -6.6 -5.9218 | opp_overlap 1483916 CTTTATCGCAAAAAA TCCCATAGGA TGAGAAC TCCCATGGGA TTTTTTTATTGTGTG TERM 1939 1483942 - 1483916 - T 95 -8.8 -5.0538 | opp_overlap 1483916 CTTTATCGCAAAAAA TCCCATAGGA TGAGAAC TCCCATGGGA TTTTTTTATTGTGTG blpX 1484359 - 1483979 - | bacteriocin self-immunity protein, putative stu1674 1484747 - 1484484 - | hypothetical protein blpI 1485365 - 1485069 - | immunity protein TERM 1940 1485520 - 1485504 - R 83 -2.3 -5.81622 | opp_overlap 1485504 ACAAAATGAAAAAAA TTGAG GGAGATA CTCAA TCTTTTAACCTATTT blpT 1486462 - 1485530 - | immunity/modification protein TERM 1941 1486588 - 1486645 + H 82 -10.1 -3.52874 | opp_overlap 1486588 1486622 TATCACCATGATATA CTCCCCTTATAGTGGACAGTGAAAA AATAAAAA TTTTCACTAGAAACTATAAGGGGAG TCTTATTATGTCCAA TERM 1942 1486645 - 1486588 - H 87 -12.3 -2.96692 | opp_overlap 1486588, overlap 1486622 TATCACCATGATATA CTCCCCTTATAGTGGACAGTGAAAA AATAAAAA TTTTCACTAGAAACTATAAGGGGAG TCTTATTATGTCCAA tnpSth1 1486599 - 1487339 + | IS3 familytransposase orf1 TERM 1943 1488215 - 1488181 - g 100 -17.2 -3.68302 | opp_overlap 1488209 TCAAGAGCGCAATAA CGGCCTTGCCCCTCTT GAA ATGAGGAACAAGGCCG TCGCCTAATATTTTA tnpSth1 1487354 - 1488223 + | IS3 familytransposase orf2 stu1680 1488610 - 1488470 - | pore-forming peptide, putative bacteriocin, truncated stu1681 1489262 - 1488861 - | hypothetical protein TERM 1944 1489207 - 1489196 - G 73 -5.8 -4.50058 | opp_overlap 1489199 TACTTATAAGGAAAA CTGC CAAC GCAG CAGTGATGGTTCTAA stu1682 1489588 - 1489388 - | hypothetical protein stu1683 1489759 - 1489592 - | hypothetical protein TERM 1945 1489859 - 1489838 - R 100 -11.7 -5.27923 | opp_overlap 1489828 1489838 GAAGCCGATAAAAAA GTAGTGACA TAAA TGTCACTAC TTGTCTGACCTTATA TERM 1946 1489838 - 1489859 + r 90 -11.7 -3.52906 | opp_overlap 1489838, overlap 1489828 GAAGCCGATAAAAAA GTAGTGACA TAAA TGTCACTAC TTGTCTGACCTTATA stu1684 1490029 - 1489856 - | hypothetical protein blpU 1490479 - 1490249 - | pore-forming peptide, putative bacteriocin rr09 1490729 - 1491460 + | response regulator (homolog to BlpR Spn) TERM 1947 1491722 - 1491697 - g 93 -8.5 -5.28683 | opp_overlap 1491697 1491695 ACTAAGACTAAAAAA CCATTAAAAAT AAAG ATTTTCAATGG TCTCTTCCCTGATAT TERM 1948 1492159 - 1492146 - g 70 -3.1 -4.84359 | GGACTTCCAGAAAAA TCTCC AGCT AGAGA ATCTCTACACCTACA hk09 1491460 - 1492800 + | sensor histidine kinase (homolog to BlpH Spn) TERM 1949 1492805 - 1492794 - T 73 -3.6 -5.03201 | overlap 1492788 AACAATAACTAAAAA GGCC TAAC AGCC TTTTTTCTATACCTA blpC 1492979 - 1492818 - | signal peptide, putative stu1689 1493899 - 1492994 - | bacteriocin ABC exporter accessory protein, truncated TERM 1950 1493231 - 1493251 + g 93 -9.7 -4.7416 | opp_overlap 1493221 1493231 ACCAACCTTATCCAA GGTCAGTCG AAC TGACTGGCC TTTTTGCAGTTTTGG TERM 1951 1493355 - 1493368 + g 80 -4.5 -5.27923 | AACTCAGTTCCTGTC GCAGC CATG GTTGC TTTTTTATCAGCTTG stu1690 1494362 - 1494027 - | bacteriocin ABC exporter accessory protein, truncated blpA 1496546 - 1494378 - | bacteriocin ABC transporter ATP binding protein TERM 1952 1494542 - 1494561 + g 71 -5 -4.52589 | overlap 1494545 TATCTTTTAGTGCTA GGAGGTTA TCAA TAACCTGC TTTTCTGTCAAAACA TERM 1953 1496963 - 1496951 - H 79 -5.5 -5.16237 | opp_overlap 1496951 AATCCTATCAAAAAA GGCTA AAT CAGCC TCTTGAGATTCGATT TERM 1954 1497204 - 1497157 - g 100 -18.1 -4.63527 | GCACCATCTCAAAAA GCTCTATAATCTCTACAGTGG TTTTTC CCACTACAGAAATTATAGAGC CGAAGTTAAGTAGTT stu1692 1496966 - 1497217 + | hypothetical protein TERM 1955 1497240 - 1497294 + T 79 -5.3 -5.19879 | gap 1 GTAAACTGAGTCATA GGAATAAATCTCTTTCTAGTAATGTT TTGC AACTCTACTATAACG-GATTTATTCC TTTTTGTGTTTACAC TERM 1956 1497467 - 1497488 + T 83 -11.7 -2.85176 | opp_overlap 1497467, overlap 1497464 1497463 GTAGCCAACAAAAAA GTAGTGACA TAAA TGTCACTAC TCGATTTTGATTTTT TERM 1957 1497488 - 1497467 - T 100 -11.7 -5.4833 | opp_overlap 1497467 1497464 1497463 GTAGCCAACAAAAAA GTAGTGACA TAAA TGTCACTAC TCGATTTTGATTTTT stu1693 1499290 - 1497545 - | lipid/multidrug/protein-type ABC exporter, ATP binding/membrane-spanning protein stu1694 1501040 - 1499283 - | lipid/multidrug/protein-type ABC exporter, ATP binding/membrane-spanning protein TERM 1958 1501224 - 1501258 + r 79 -10.2 -2.94759 | opp_overlap 1501225 1501228, overlap 1501228 GTGCCCATCATCAAT AGAATCAGTTATCC TTATCGT GGATAACTGATTCG TCCTTCTTAGGGTTC TERM 1959 1501257 - 1501225 - R 93 -13.7 -3.17051 | opp_overlap 1501224 1501228, overlap 1501228 TGCCCATCATCAATA GAATCAGTTATCC TTATCGT GGATAACTGATTC GTCCTTCTTAGGGTT TERM 1960 1501254 - 1501228 - R 83 -9.6 -3.72742 | opp_overlap 1501224 1501228, overlap 1501225 CCATCATCAATAGAA TCAGTTATCC TTATCGT GGATAACTGA TTCGTCCTTCTTAGG TERM 1961 1501228 - 1501254 + r 79 -9.6 -3.33171 | opp_overlap 1501228 1501225, overlap 1501224 CCATCATCAATAGAA TCAGTTATCC TTATCGT GGATAACTGA TTCGTCCTTCTTAGG TERM 1962 1501280 - 1501298 + r 70 -8.2 -3.32109 | opp_overlap 1501278 1501280, overlap 1501278 TTAGGGTTCCAAATA CGTCTGAT TTC ATCAGATG TCTTATACTCTCTGA TERM 1963 1501542 - 1501552 + r 71 -5.4 -4.50686 | AGTGTTTCATTGTTT CACT AAA AGTG TTTATTCATTTTTCC TERM 1964 1501634 - 1501612 - R 76 -7.6 -3.93619 | opp_overlap 1501612 AGAAAATAAGTGAAA CCTGGGACGC AAA GTGTCCTAGG TTTTTTACTCATTAA TERM 1965 1501612 - 1501634 + r 100 -12 -5.2189 | opp_overlap 1501612 AGAAAATAAGTGAAA CCTGGGACGC AAA GTGTCCTAGG TTTTTTACTCATTAA stu1695 1502166 - 1501639 - | hypothetical protein TERM 1966 1502026 - 1502003 - G 76 -7.6 -4.2717 | gap 1, overlap 1502015 ACTACCCTACCAAAA TGTTGAATACC AGG GGT-TTCAACA CCTTCAACTAGCCCA stu1696 1503337 - 1502168 - | hypothetical protein stu1697 1504063 - 1503341 - | hypothetical protein TERM 1967 1503568 - 1503586 + g 71 -3.8 -4.94222 | overlap 1503570 1503580 GTTTGGACTTATCCC GCTTTTGC TTA GCAGAAAC TTTTTGTCCCTTATT stu1698 1505473 - 1504118 - | hypothetical protein TERM 1968 1505229 - 1505207 - G 72 -9.2 -3.3353 | overlap 1505205 1505203 CTGCTCATAAAGACA GTCTAGCTCA TCC TTAGCTAGAC CAATCCCCTCATTAT TERM 1969 1506245 - 1506282 + r 80 -2.7 -5.58454 | opp_overlap 1506250, overlap 1506246 1506250 AAAGATGAATAATAA GTAAAGAGGCCGAAACT TTAT AGTTTCAACCTCTTAAA TTTTTTTAATCTAAA TERM 1970 1506277 - 1506250 - R 100 -11.4 -4.14945 | opp_overlap 1506246 1506245 1506250 TGAATAATAAGTAAA GAGGCCGAAACT TTAT AGTTTCAACCTC TTAAATTTTTTTAAT TERM 1971 1506347 - 1506315 - R 93 -9.9 -4.18494 | opp_overlap 1506315 1506320, overlap 1506320 TACCTTTATCTAAAA GCCAAGCTTAGAAGC TTT GCTTCTTAGCTTTAC GTTCAGCACGTCCCT TERM 1972 1506320 - 1506342 + r 87 -10.6 -3.75153 | opp_overlap 1506320 1506315, overlap 1506315 TTATCTAAAAGCCAA GCTTAGAAGC TTT GCTTCTTAGC TTTACGTTCAGCACG TERM 1973 1506342 - 1506320 - R 85 -10.6 -3.38281 | opp_overlap 1506315 1506320, overlap 1506315 TTATCTAAAAGCCAA GCTTAGAAGC TTT GCTTCTTAGC TTTACGTTCAGCACG rheB 1507665 - 1506322 - | ATP-dependent RNA helicase TERM 1974 1507711 - 1507738 + r 100 -10 -4.49958 | opp_overlap 1507712 1507718, overlap 1507712 1507718 CCTTATCATTATAAC AGAAAAAGAGCA TTTC TGCTCTTTTTCA TTTATTTCATAACGT TERM 1975 1507737 - 1507712 - R 93 -13.5 -3.29273 | opp_overlap 1507712 1507711 1507718, overlap 1507718 CTTATCATTATAACA GAAAAAGAGCA TTTC TGCTCTTTTTC ATTTATTTCATAACG TERM 1976 1507712 - 1507737 + r 93 -13.5 -3.29252 | opp_overlap 1507712 1507718, overlap 1507711 1507718 CTTATCATTATAACA GAAAAAGAGCA TTTC TGCTCTTTTTC ATTTATTTCATAACG TERM 1977 1507718 - 1507731 + r 84 -6.7 -5.13137 | opp_overlap 1507712 1507718, overlap 1507712 1507711 ATTATAACAGAAAAA GAGCA TTTC TGCTC TTTTTCATTTATTTC TERM 1978 1507731 - 1507718 - R 84 -6.7 -5.16133 | opp_overlap 1507718 1507712 1507711, overlap 1507712 ATTATAACAGAAAAA GAGCA TTTC TGCTC TTTTTCATTTATTTC mraY 1508762 - 1507740 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1979 1508661 - 1508671 + g 87 -3.2 -5.81622 | ATCTTCATGCATCTG TTGG CCA CCGA TTTTTTTGATTTTGT TERM 1980 1508744 - 1508731 - G 72 -4.5 -4.66938 | gap 1 ACCGTCAACACAAAA GC-GGC CAC GCCTGC TATAAGACTCATAGT pbp2X 1511031 - 1508764 - | penicillin binding protein 2X ftsL 1511355 - 1511035 - | cell division protein mraW 1512422 - 1511358 - | S-adenosyl-methyltransferase MraW TERM 1981 1512378 - 1512396 + g 71 -6.6 -4.09215 | opp_overlap 1512378 GAAGTCAAAAAAAAA GCTAGACC CTA GGCCTGGC TTTATGATTGATATA TERM 1982 1512396 - 1512378 - G 100 -6.6 -6.15259 | opp_overlap 1512378 GAAGTCAAAAAAAAA GCTAGACC CTA GGCCTGGC TTTATGATTGATATA stu1704 1513471 - 1512476 - | hypothetical protein stu1707 1513834 - 1513739 - | hypothetical protein stu1708 1514464 - 1514108 - | hypothetical protein TERM 1983 1514717 - 1514699 - R 77 -6 -4.67353 | opp_overlap 1514699 TTAGGTATCCAAAAA GCAGAC TCCAAAG GTCTGC TTTTTACTATCAGCC TERM 1984 1514699 - 1514717 + r 80 -6.7 -4.8048 | opp_overlap 1514699 TTAGGTATCCAAAAA GCAGACT CCAAA GGTCTGC TTTTTACTATCAGCC stu1709 1514953 - 1514684 - | hypothetical protein TERM 1985 1515096 - 1515108 + r 72 -4.9 -4.731 | AGGAAAACAATACTC TTCTA ATC TAGAA TTTTATTACTGAATT TERM 1986 1515158 - 1515140 - R 93 -7.4 -5.66338 | AAATATAATAAAAAA CGCCAAGT ATA ACCTGACG TATGAAATCACCTCA TERM 1987 1515181 - 1515198 + r 84 -6.3 -5.20606 | TCACCTCATTTTTTA GCTTTGT ATAC ACGAAGC TTTTTATTGGTCTTT TERM 1988 1515325 - 1515312 - R 83 -5.9 -5.19261 | opp_overlap 1515312 1515313, overlap 1515313 AAACTGACCAAAAAA GCCCC TCAT GGAGC TTGATGGGTTATTCT proA 1516584 - 1515334 - | gamma-glutamyl phosphate reductase proB 1517389 - 1516586 - | gamma-glutamyl kinase TERM 1989 1517494 - 1517471 - R 83 -6 -5.1675 | TTATCCATCAAAAAA GAATCCCTCC AATC AGAGAGACTC TTTAAACAATTTGAC stu1712 1519099 - 1517510 - | hypothetical protein stu1713 1519602 - 1519102 - | ABC transporter ATP binding protein, truncated stu1714 1519834 - 1519556 - | ABC transporter ATP binding protein, truncated TERM 1990 1519758 - 1519772 + gH 73 -8.6 -3.32022 | CCAAAGATTTCACCG TCTCGA ATC TCGAGA TTAATATCTGAGAGA stu1715 1520108 - 1520737 + | hypothetical protein TERM 1991 1521182 - 1521137 - T 90 -11.3 -3.80858 | opp_overlap 1521137 1521138 1521149, overlap 1521138 1521149 CAATAGTAATGGAAA TCTATCAAAAAAGACCGGTGT ATTC ACACCAGTCTTTTTTGAGGGG TTTGGGATACAAAAA TERM 1992 1521137 - 1521182 + T 100 -13.5 -3.59979 | opp_overlap 1521137 1521138 1521149, overlap 1521138 1521149 CAATAGTAATGGAAA TCTATCAAAAAAGACCGGTGT ATTC ACACCAGTCTTTTTTGAGGGG TTTGGGATACAAAAA TERM 1993 1521138 - 1521181 + T 95 -14.8 -2.75844 | opp_overlap 1521137 1521138 1521149, overlap 1521137 1521149 AATAGTAATGGAAAT CTATCAAAAAAGACCGGTGT ATTC ACACCAGTCTTTTTTGAGGG GTTTGGGATACAAAA TERM 1994 1521181 - 1521138 - T 95 -14.8 -2.87792 | opp_overlap 1521138 1521137 1521149, overlap 1521137 1521149 AATAGTAATGGAAAT CTATCAAAAAAGACCGGTGT ATTC ACACCAGTCTTTTTTGAGGG GTTTGGGATACAAAA TERM 1995 1521170 - 1521149 - T 100 -10.9 -5.19261 | opp_overlap 1521149 1521138 1521137, overlap 1521138 1521137 AAATCTATCAAAAAA GACCGGTGT ATTC ACACCAGTC TTTTTTGAGGGGTTT TERM 1996 1521149 - 1521170 + T 95 -8.7 -5.03747 | opp_overlap 1521138 1521137 1521149, overlap 1521138 1521137 AAATCTATCAAAAAA GACCGGTGT ATTC ACACCAGTC TTTTTTGAGGGGTTT rexA 1524888 - 1521235 - | ATP-dependent exonuclease, subunit A rexB 1528198 - 1524878 - | ATP-dependent exonuclease, subunit B TERM 1997 1525423 - 1525408 - G 77 -6.2 -4.61633 | opp_overlap 1525400 1525408 ACATAGCCCCAAAAA GTTGAT CAGC ATCAAC CTTATAGGTTTGACG TERM 1998 1526070 - 1526051 - G 75 -9.4 -3.34013 | opp_overlap 1526047 1526044 1526053, overlap 1526068 CACCTTTGGAATCAA GACTTGAT CCTT ATCAAGTC GCTTACGGAGATAGC stu1718 1529339 - 1528887 - | hypothetical protein stu1719 1529822 - 1529682 - | hypothetical protein TERM 1999 1529964 - 1529943 - R 95 -8.7 -5.08878 | opp_overlap 1529943 1529941 AACAGACAAACAAAA GAACCTGGC AATT ACCAGGCTC TCATTTTTAGTAGAG TERM 2000 1529991 - 1529979 - R 73 -9.1 -2.79183 | opp_overlap 1529978 1529975 1529974 CTCATTTTTAGTAGA GAGGG CTA CCCTC CTAATTGTAATCAGT stu1720 1530660 - 1530040 - | hypothetical protein stu1721 1531988 - 1531122 - | hypothetical protein stu1722 1532202 - 1531975 - | hypothetical protein TERM 2001 1532250 - 1532227 - R 77 -5.4 -4.91109 | gap 1, opp_overlap 1532227 1532229 TTTTTATTAGAAAAA GATTTGGAGCA GAC TG-TCCAAACC TTTTTCTCTTCTTAT TERM 2002 1532227 - 1532250 + r 74 -3.2 -5.21506 | gap 1, opp_overlap 1532227, overlap 1532229 TTTTTATTAGAAAAA GATTTGGAGCA GAC TG-TCCAAACC TTTTTCTCTTCTTAT stu1723 1533647 - 1532262 - | hypothetical protein ansB 1533718 - 1534686 + | L-asparaginase TERM 2003 1534923 - 1534901 - T 100 -9.2 -5.36364 | opp_overlap 1534901 CGAAAAACAGAAAAA CCAGTTAAGA AAA TCTCAACCGG TTATCTTACTTATGT TERM 2004 1535324 - 1535303 - T 100 -13.1 -4.93547 | opp_overlap 1535303 TGAAGGAAGCAAAAA CTCTCAGTG AGTT CACTGAGAG TTTTTGTTATCATGG TERM 2005 1535303 - 1535324 + T 100 -13.1 -5.22006 | opp_overlap 1535303 TGAAGGAAGCAAAAA CTCTCAGTG AGTT CACTGAGAG TTTTTGTTATCATGG recG 1537473 - 1535455 - | ATP-dependent DNA helicase TERM 2006 1537566 - 1537592 + r 74 -2.3 -5.49569 | opp_overlap 1537571, overlap 1537571 TCTTCCCTAAAATCA AAAAATCCAGT ATCAA ACTGGATTTCC TTTTTTATATTAGTC TERM 2007 1537571 - 1537587 + r 76 -6.6 -4.49041 | opp_overlap 1537571, overlap 1537566 CCTAAAATCAAAAAA TCCAGT ATCAA ACTGGA TTTCCTTTTTTATAT TERM 2008 1537587 - 1537571 - R 87 -6.6 -5.46698 | opp_overlap 1537566 1537571 CCTAAAATCAAAAAA TCCAGT ATCAA ACTGGA TTTCCTTTTTTATAT alr 1538705 - 1537602 - | alanine racemase TERM 2009 1538352 - 1538318 - G 75 -9.4 -3.36785 | opp_overlap 1538317, overlap 1538319 1538326 CCATACCTGAATCAA CCTTAATATGACAGGT CAA ACCTGTCAAATCAAGC CCTTGTTTCTGAGCC TERM 2010 1538351 - 1538319 - G 90 -12.9 -2.6175 | opp_overlap 1538317, overlap 1538318 1538326 CATACCTGAATCAAC CTTAATATGACAGGT CAA ACCTGTCAAATCAAG CCCTTGTTTCTGAGC TERM 2011 1538344 - 1538326 - G 83 -11.8 -3.11178 | opp_overlap 1538317, overlap 1538319 1538318 GAATCAACCTTAATA TGACAGGT CAA ACCTGTCA AATCAAGCCCTTGTT acpS 1539085 - 1538726 - | 4'-phosphopantetheinyl transferase TERM 2012 1539025 - 1539035 + g 72 -4.6 -4.68593 | CAAAACGTGGGTTTC GGTC ATA GGCC TTTTTAACTGCTGAA aroG1 1540120 - 1539089 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2013 1540153 - 1540191 + r 79 -9 -3.75629 | gap 1, opp_overlap 1540153 1540156, overlap 1540156 CCTATTTTGGATAAA GAGTCGAGCCG-TTTGG AAGATC CCAAAACGGCTCAATTC TTTACATTCAGACTG TERM 2014 1540191 - 1540153 - R 83 -9.7 -3.86897 | gap 1, opp_overlap 1540153 1540156, overlap 1540156 CCTATTTTGGATAAA GAGTCGAGCCGTTT-GGA AGAT CCCAAAACGGCTCAATTC TTTACATTCAGACTG TERM 2015 1540188 - 1540156 - R 75 -10 -2.71125 | gap 1, opp_overlap 1540156 1540153, overlap 1540153 ATTTTGGATAAAGAG TCGAGCCGTTT-GGA AGAT CCCAAAACGGCTCAA TTCTTTACATTCAGA TERM 2016 1540156 - 1540188 + r 73 -7.1 -4.0098 | gap 1, opp_overlap 1540153 1540156, overlap 1540153 ATTTTGGATAAAGAG TCGAGCCG-TTTGG AAGATC CCAAAACGGCTCAA TTCTTTACATTCAGA aroG2 1541249 - 1540218 - | phospho-2-dehydro-3-deoxyheptonate aldolase secA 1543822 - 1541273 - | preprotein translocase subunit SecA TERM 2017 1542260 - 1542276 + g 73 -8.7 -3.74251 | ACGACCACGCAACTG GTTGTCG ATA CGACGAC TTTCATGACGCTCTG TERM 2018 1543928 - 1543913 - R 80 -2.5 -5.72622 | TTGACAAAGAAAAAA GCCCT AGTTTA AAGGC TTTCACAACAGATTA stu1731 1544262 - 1544005 - | hypothetical protein pmi1 1545296 - 1544349 - | mannose-6-phosphate isomerase TERM 2019 1545345 - 1545321 - R 93 -9.4 -4.39166 | opp_overlap 1545321 1545320 CTGTATAGAGCAAAA CGCCTTAAGA TCATG TCTTAAAGCG ATTTTACATATTTGG scrK 1546255 - 1545362 - | fructokinase TERM 2020 1546435 - 1546403 - R 87 -11.5 -3.30972 | opp_overlap 1546403 1546402 1546411, overlap 1546411 TTATAAAACATTCAA CTAAAAAAGCCGAAA CAG CTTCGACTTTTCTAG CTTATTATTTAACTG TERM 2021 1546427 - 1546411 - R 80 -5.1 -5.28481 | opp_overlap 1546403 1546402 1546411, overlap 1546403 CATTCAACTAAAAAA GCCGAAA CAG CTTCGAC TTTTCTAGCTTATTA scrA 1548386 - 1546440 - | sucrose PTS component II TERM 2022 1548058 - 1548068 + g 89 -6.8 -5.20606 | CAGTTCCCTTGTTTA GCAG CTT CTGC TTTTTGTTCGTCTTT TERM 2023 1548996 - 1548978 - g 95 -4.6 -5.81622 | overlap 1548980 1548985 ACAAAATCAAAAAAA TCGACAAG GTT CTTATCAA AAAACCTACTGACGT TERM 2024 1549145 - 1549165 + G 73 -8.3 -3.73775 | GATGTCGAAAACTGG GTTGAGGTT GGA GACCTCGAC TTTGGTGGCACTGGC scrB 1548530 - 1549972 + | sucrose-6-phosphate hydrolase stu1736 1549981 - 1550211 + | sucrose regulon regulatory protein, truncated stu1737 1550305 - 1550946 + | sucrose regulon regulatory protein, truncated TERM 2025 1550982 - 1550948 - T 85 -8.7 -4.08706 | opp_overlap 1550953, overlap 1550953 GTTCCAGTATATAAA TAAAAGTCGCAAGAA ATCTG TACTTGCGACTTTTT CTTGAGCTTAGTTAT TERM 2026 1550953 - 1550977 + T 95 -8.6 -5.10208 | opp_overlap 1550948 1550953 AGTATATAAATAAAA GTCGCAAGAA ATCTG TACTTGCGAC TTTTTCTTGAGCTTA TERM 2027 1550977 - 1550953 - T 95 -8.6 -5.06016 | opp_overlap 1550953, overlap 1550948 AGTATATAAATAAAA GTCGCAAGAA ATCTG TACTTGCGAC TTTTTCTTGAGCTTA TERM 2028 1551029 - 1551006 - T 84 -5.4 -5.53991 | opp_overlap 1551006 TAGTTATCAAAAAAA GAAGTTGA AACAGCAA TCAACTTC TTTTTCTTATGCTTC TERM 2029 1551006 - 1551029 + T 82 -5.4 -5.24416 | opp_overlap 1551006 TAGTTATCAAAAAAA GAAGTTGA AACAGCAA TCAACTTC TTTTTCTTATGCTTC nusB 1551470 - 1551036 - | transcription antitermination protein NusB stu1739 1551894 - 1551463 - | hypothetical protein TERM 2030 1551915 - 1551883 - G 83 -9.3 -4.09685 | opp_overlap 1551887 1551887, overlap 1551887 1551888 CGTTAGTTTGGAAAA TAAAGCTTTCAAACC AGT GGTTCGAAAGACTTA GTTAGGCTTAGGCAC TERM 2031 1551911 - 1551887 - G 82 -7.9 -4.65263 | opp_overlap 1551887 1551887, overlap 1551883 1551888 AGTTTGGAAAATAAA GCTTTCAAACC AGT GGTTCGAAAGA CTTAGTTAGGCTTAG TERM 2032 1551910 - 1551888 - G 85 -11.4 -3.38435 | opp_overlap 1551887 1551887, overlap 1551887 1551883 GTTTGGAAAATAAAG CTTTCAAACC AGT GGTTCGAAAG ACTTAGTTAGGCTTA efp 1552483 - 1551923 - | elongation factor P comEB 1553066 - 1552596 - | late competence protein required for DNA binding and uptake pepP 1554131 - 1553070 - | aminopeptidase P; XAA-pro aminopeptidase TERM 2033 1554252 - 1554235 - R 71 -3.4 -5.1356 | overlap 1554229 TGGCATTAATAAAAA GCCAGA TGAAAC TCTGAC TTTATAAGTACTATA stu1743 1554749 - 1554321 - | hypothetical protein stu1744 1555225 - 1554794 - | ABC transporter ATP binding protein, truncated stu1745 1555593 - 1555357 - | ABC transporter ATP binding protein, truncated TERM 2034 1555884 - 1555832 - R 95 -13.1 -3.65313 | opp_overlap 1555820 1555837 1555838, overlap 1555823 1555838 1555847 TAATTATATTTTAAA TATAAATCTTTAACATCCAAGTGAA CTA TTCACTTGGACGATGAAAACTTATA ACAATTCTTCTTCAT TERM 2035 1555878 - 1555838 - R 100 -9.9 -4.33928 | opp_overlap 1555838 1555837, overlap 1555832 1555847 TATTTTAAATATAAA TCTTTAACATCCAAGTGAA CTA TTCACTTGGACGATGAAAA CTTATAACAATTCTT TERM 2036 1555869 - 1555847 - R 90 -13.6 -3.08774 | opp_overlap 1555838 1555837, overlap 1555838 1555832 TATAAATCTTTAACA TCCAAGTGAA CTA TTCACTTGGA CGATGAAAACTTATA stu1746 1556124 - 1555933 - | hypothetical protein TERM 2037 1556291 - 1556272 - R 93 -7.2 -5.52384 | overlap 1556274 CCCTTATCAAAAAAA TAGTGACA TAGA TGTCACCA TAAATAGCTACGAAA TERM 2038 1556289 - 1556274 - R 81 -7.6 -4.40552 | overlap 1556272 CTTATCAAAAAAATA GTGACA TAGA TGTCAC CATAAATAGCTACGA TERM 2039 1556328 - 1556310 - R 83 -6 -5.17353 | opp_overlap 1556326 ATAGCTACGAAAAAA CAAGTCCT TAT ATGACTTG TCCAACAATCTGCTT stu1747 1556558 - 1556286 - | hypothetical protein TERM 2040 1556642 - 1556630 - R 86 -5.5 -5.73563 | opp_overlap 1556630 ACTAAAGCAAAAAAA GACTC AGA GAGCC CTTTTCACTTTATTT uvrA 1559477 - 1556652 - | excinuclease ABC subunit A TERM 2041 1559656 - 1559633 - H 84 -5.2 -5.41143 | opp_overlap 1559633 GAGTGTGCAAAAAAA GGCAAAGAGA ATAG TCTCTAGGCC TCAATTGATATCACT TERM 2042 1560041 - 1560020 - g 72 -10.3 -2.66329 | opp_overlap 1560025, overlap 1560019 1560017 CCAACCCAAGAAGAG CGTAATAAC AAAA GTTATTACG TTACCATTCCATTGG corA2 1559786 - 1560730 + | CorA cation transporter (MIT) family protein TERM 2043 1560966 - 1560945 - g 86 -4.5 -5.47914 | gap 1, opp_overlap 1560945 AAAAATCAGAAAAAA GGAAT-CACA GGC CGTGGATTCC TTGGTGCTCCAACTG TERM 2044 1561059 - 1561021 - g 71 -9.7 -2.87825 | overlap 1561020 AAAAGCACCAACAAG CTGTTTCTGGAAAACCT AGCAA AGAAATTCCAGAAACAG ACAAAACTCCTTGGA stu1750 1560801 - 1561472 + | hypothetical protein TERM 2045 1561489 - 1561504 + F 100 -10.4 -5.08824 | CAACCGATACCTCAA GCACCC ATAA GGGTGC TTTTTTGCGTCAGAA stu1751 1561589 - 1562470 + | hypothetical protein TERM 2046 1562570 - 1562593 + T 77 -5.2 -4.90136 | opp_overlap 1562573, overlap 1562573 1562575 AATTAAGACAGAAAA AAACACCCTC AGAT GAGGGCGTTA TTTTTAATCTTCGTT TERM 2047 1562590 - 1562573 - T 100 -9.1 -5.80248 | opp_overlap 1562570 1562573 1562575 TAAGACAGAAAAAAA CACCCTC AGAT GAGGGCG TTATTTTTAATCTTC TERM 2048 1562573 - 1562590 + T 80 -6.9 -4.53398 | opp_overlap 1562573, overlap 1562570 1562575 TAAGACAGAAAAAAA CACCCTC AGAT GAGGGCG TTATTTTTAATCTTC rpsR 1562836 - 1562597 - | 30S ribosomal protein S18 ssbB 1563396 - 1562878 - | single-strand DNA-binding protein rpsF 1563698 - 1563408 - | 30S ribosomal protein S6 stu1755 1563917 - 1564249 + | hypothetical protein TERM 2049 1564642 - 1564632 - g 75 -8.2 -3.98204 | opp_overlap 1564631 AAATACATGCACAAA CGCC GTT GGCG ATCTTCACGTATTTC stu1756 1564287 - 1564871 + | hypothetical protein TERM 2050 1564896 - 1564936 + F 72 -5 -4.78752 | gap 1, opp_overlap 1564903, overlap 1564903 ACCAAAATAAACATA TC-AAAAAGCTCATTCT TACACACT AGAATGAGCTTTTAAGA TTTTTCAATTGTCAT TERM 2051 1564903 - 1564928 + F 81 -7.7 -4.31329 | opp_overlap 1564903, overlap 1564896 TAAACATATCAAAAA GCTCATTCT TACACACT AGAATGAGC TTTTAAGATTTTTCA TERM 2052 1564928 - 1564903 - f 88 -7.7 -4.90217 | opp_overlap 1564896 1564903 TAAACATATCAAAAA GCTCATTCT TACACACT AGAATGAGC TTTTAAGATTTTTCA TERM 2053 1565808 - 1565791 - g 83 -4.9 -5.18726 | gap 1 GCTCCAGAAGAAAAA CTCCTCAA AGC TTG-GGAG GGTCTAGGTTACTAC TERM 2054 1566278 - 1566255 - g 73 -2.4 -5.27938 | ATTGCCAAAGAAAAA GCCCAAACCT GTGC AAATTCAGGC TTTTATTATCAGAAA mutY 1565536 - 1566687 + | A/G-specific adenine glycosylase TERM 2055 1566700 - 1566682 - T 82 -5.2 -5.27399 | opp_overlap 1566676 1566682 GAAGATAGCAAAAAA GGGTAGCA TCG CGCTAGCC TTTTTCTTATGCGCC TERM 2056 1566682 - 1566700 + T 76 -4.5 -5.18726 | opp_overlap 1566682, overlap 1566676 GAAGATAGCAAAAAA GGGTAGC ATCGC GCTAGCC TTTTTCTTATGCGCC stu1758 1567265 - 1567014 - | hypothetical protein stu1759 1567580 - 1567368 - | hypothetical protein stu1760 1567927 - 1567583 - | hypothetical protein TERM 2057 1568378 - 1568361 - R 100 -9.1 -5.14965 | opp_overlap 1568356 1568361 AGTTCTACCAAAAAA GCCGGAC CTCA GTCCAGC TTTTATCTGTCTATT TERM 2058 1568361 - 1568378 + r 83 -6.9 -4.67354 | opp_overlap 1568361, overlap 1568356 AGTTCTACCAAAAAA GCCGGAC CTCA GTCCAGC TTTTATCTGTCTATT polA 1571154 - 1568515 - | DNA polymerase I TERM 2059 1571276 - 1571263 - H 71 -5.3 -4.50661 | opp_overlap 1571263 AAGCCATAAGGAAAA TTGTC CATC GACAA ATTTTAGAACGAATC mutS2 1571361 - 1573712 + | DNA mismatch repair protein TERM 2060 1573748 - 1573727 - T 70 -8.1 -3.21498 | gap 1, opp_overlap 1573727, overlap 1573725 1573723 AAACTAATTAAGAGA GACTGAGACA CTA TGTC-CAGTC TTTTTCATATATCTC TERM 2061 1573727 - 1573748 + T 90 -8.1 -4.86133 | gap 1, opp_overlap 1573727 1573725 1573723 AAACTAATTAAGAGA GACTGAGACA CTA TGTC-CAGTC TTTTTCATATATCTC TERM 2062 1573804 - 1573783 - T 100 -9.5 -5.88197 | opp_overlap 1573782 1573783 1573799 TCAAACACAAAAAAA GTCTCCCTT AAGC AAGGAAGAC GTCTGTTTTCTATAT stu1763 1574356 - 1573814 - | hypothetical protein stu1764 1574670 - 1574353 - | hypothetical protein rnhB 1574984 - 1575874 + | ribonuclease HIII sipA 1575893 - 1576516 + | signal peptidase I TERM 2063 1576557 - 1576530 - f 75 -7 -4.11363 | opp_overlap 1576532 1576535, overlap 1576532 AAGAACACTAAATAA GATAAGGTTGGG GAGA CCCAGCCTTATT ATGTATCTAGGAAAA TERM 2064 1576532 - 1576555 + F 91 -11.8 -3.64198 | opp_overlap 1576532 1576530, overlap 1576535 GAACACTAAATAAGA TAAGGTTGGG GAGA CCCAGCCTTA TTATGTATCTAGGAA TERM 2065 1576555 - 1576532 - f 82 -9.6 -3.63045 | opp_overlap 1576532 1576535, overlap 1576530 GAACACTAAATAAGA TAAGGTTGGG GAGA CCCAGCCTTA TTATGTATCTAGGAA TERM 2066 1576535 - 1576552 + F 85 -9.1 -3.95183 | opp_overlap 1576532 1576530, overlap 1576532 CACTAAATAAGATAA GGTTGGG GAGA CCCAGCC TTATTATGTATCTAG TERM 2067 1578937 - 1578959 + G 75 -10 -3.06815 | opp_overlap 1578937 1578935 AAACTCTTATTAACA CTTATTCACA TCC TGTGGATAAG TCTGTTAACAAACCT recD 1576578 - 1579082 + | exodeoxyribonuclease V TERM 2068 1579101 - 1579091 - T 84 -5.4 -5.58074 | opp_overlap 1579099 CAACTAGGAAAAAAA GACT TGG AGTC GCTCTGAATGAGCCA stu1768 1579464 - 1579138 - | hypothetical protein stu1769 1580149 - 1579451 - | branched chain amino acid exporter (LIV-E) family protein TERM 2069 1579695 - 1579672 - G 72 -3.2 -5.01042 | gap 1 AATCCAAACCAAAAA GCTC-AGGATT TGG AATCATTGAGC CAATTAAACAACCAA TERM 2070 1580192 - 1580162 - R 80 -9.1 -3.53761 | opp_overlap 1580163 1580166, overlap 1580163 CAATTCCTTTCTAAA TGAACCTCTTACC AGACG AGTAAGAGGTTCT TCTTATTCTTCAAAT TERM 2071 1580191 - 1580163 - R 86 -12.6 -2.72043 | opp_overlap 1580163 1580166, overlap 1580162 AATTCCTTTCTAAAT GAACCTCTTACC AGACG AGTAAGAGGTTC TTCTTATTCTTCAAA TERM 2072 1580163 - 1580191 + r 100 -11.9 -4.09963 | opp_overlap 1580162 1580163, overlap 1580166 AATTCCTTTCTAAAT GAACCTCTTAC CAGACGA GTAAGAGGTTC TTCTTATTCTTCAAA TERM 2073 1580166 - 1580188 + r 78 -7.8 -4.15654 | opp_overlap 1580163 1580162, overlap 1580163 TCCTTTCTAAATGAA CCTCTTAC CAGACGA GTAAGAGG TTCTTCTTATTCTTC gcp 1581208 - 1580195 - | O-sialoglycoprotein endopeptidase rimI 1581663 - 1581208 - | ribosomal-protein-alanine acetyltransferase stu1772 1582384 - 1581623 - | glycoprotein endopeptidase TERM 2074 1582161 - 1582143 - GH 71 -7.4 -3.57883 | overlap 1582146 ACAACACGGTCTAAA TCAGCTGG TTG CCAGCTCA CCTGAGCAACCAAAA TERM 2075 1582158 - 1582146 - GH 73 -9.1 -2.91322 | overlap 1582143 ACACGGTCTAAATCA GCTGG TTG CCAGC TCACCTGAGCAACCA stu1773 1582573 - 1582803 + | hypothetical protein TERM 2076 1582895 - 1582885 - g 73 -5.4 -4.6526 | opp_overlap 1582877 1582885 AGAAATCGGTAAAAA TACC TAT GGTA TTGAATACCAGGATG stu1774 1582808 - 1584490 + | metallo-beta-lactamase superfamily protein TERM 2077 1584514 - 1584495 - T 95 -8.6 -5.32944 | opp_overlap 1584495 CTGATAACTAAAAAA TGGTAGCC TGAC AGCTACCA TTTTTTAGTATGCTA TERM 2078 1584495 - 1584514 + T 89 -7.9 -5.23316 | opp_overlap 1584495 CTGATAACTAAAAAA TGGTAGC CTGACA GCTACCA TTTTTTAGTATGCTA stu1775 1584905 - 1584726 - | glucan-binding protein TERM 2079 1585174 - 1585189 + r 90 -4 -5.80727 | TAATGTACTTGGGAC TATTGC TAAG GCAGTA TTTTTTGTTGTTTTT TERM 2080 1585304 - 1585281 - R 93 -8.2 -5.47431 | opp_overlap 1585286, overlap 1585286 TTAAGAGAGAAAAAA GAAAACCAGG TAAC CCTGATCTTC AAATTATTTTATTAA TERM 2081 1585299 - 1585286 - R 82 -4.5 -5.51612 | opp_overlap 1585286, overlap 1585281 AGAGAAAAAAGAAAA CCAGG TAAC CCTGA TCTTCAAATTATTTT gnlA 1586686 - 1585316 - | glutamine synthetase gnlR 1587082 - 1586708 - | glutamine synthetase transcriptional regulatorMerR family TERM 2082 1587232 - 1587247 + r 71 -3.2 -5.06116 | opp_overlap 1587232, overlap 1587227 AAAAACATAAAAAAA GAGCTC AAGA GAACTC TTTTATTCTTATTTT TERM 2083 1587247 - 1587232 - R 93 -5.4 -5.9667 | opp_overlap 1587232 1587227 AAAAACATAAAAAAA GAGCTC AAGA GAACTC TTTTATTCTTATTTT stu1778 1587759 - 1587256 - | hypothetical protein TERM 2084 1587936 - 1587879 - H 86 -2.8 -5.83226 | opp_overlap 1587884, overlap 1587882 1587883 1587884 1587923 AATTCAACAAAAAAA GAACGGCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGCTTTTT AAGTATACACAAAAA TERM 2085 1587933 - 1587882 - H 73 -4.5 -4.96435 | opp_overlap 1587884, overlap 1587879 1587883 1587884 1587923 TCAACAAAAAAAGAA CGGCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGCTT TTTAAGTATACACAA TERM 2086 1587932 - 1587883 - H 73 -8 -3.55421 | opp_overlap 1587884, overlap 1587882 1587879 1587884 1587923 CAACAAAAAAAGAAC GGCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGCT TTTTAAGTATACACA TERM 2087 1587931 - 1587884 - H 83 -11.5 -2.70812 | opp_overlap 1587884, overlap 1587883 1587882 1587879 1587923 AACAAAAAAAGAACG GCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGC TTTTTAAGTATACAC TERM 2088 1587884 - 1587931 + H 100 -18.1 -4.70659 | opp_overlap 1587883 1587882 1587879 1587884 1587923 AACAAAAAAAGAACG GCTCTATAATTTCTGTAGTGG GTAAAA CCACTGTAGAGATTATAGAGC TTTTTAAGTATACAC TERM 2089 1587964 - 1587952 - H 76 -4.1 -5.06505 | overlap 1587923 AAGTATACACAAAAA GTCCT ATA AGAAC TATAATAAAGAGCGA stu1779 1588004 - 1588141 + | truncated IS1193 transposase stu1780 1588138 - 1588344 + | truncated IS1193 transposase TERM 2090 1588802 - 1588780 - g 83 -6.3 -5.10064 | opp_overlap 1588801 CTGAACATACAAAAA GAGAAAACC TATCC GGTCCTCTC TAGATGTTAGATTTT stu1781 1588642 - 1588812 + | truncated IS1193 transposase TERM 2091 1588869 - 1588850 - T 71 -6.4 -4.24963 | opp_overlap 1588850 GACAAGGAGCCAAAA GAACGCCC TATA GAACGTTC TTGATTTACTAAAAA pgk 1590084 - 1588885 - | phosphoglycerate kinase TERM 2092 1589211 - 1589193 - G 70 -8.8 -3.2794 | opp_overlap 1589195 TTGGACCGATATCAA GACCAAGG AAA CCTGGGTC TACTGCTTCACCTTC stu1783 1590585 - 1590337 - | hypothetical protein TERM 2093 1590652 - 1590691 + H 100 -21.1 -5.19328 | opp_overlap 1590662 ATAACACTTGAACTG CACCCCAAAAGTTAGAT AGAAAA ATCTAACTTTTGGGGTG TTTTTATTATGAAAT stu1784 1590700 - 1590984 + | hypothetical protein stu1785 1591047 - 1591235 + | hypothetical protein stu1786 1591211 - 1591549 + | hypothetical protein TERM 2094 1592042 - 1592010 - g 93 -10 -4.69549 | opp_overlap 1592010 AAGGTAAAACTAAAA GGACTCATTTCTGT GCAAT ACAGAACTAAGTCC TTTGTGTAAATTAAT TERM 2095 1592010 - 1592042 + G 79 -8.5 -4.09509 | opp_overlap 1592010 AAGGTAAAACTAAAA GGACTCATTTCTGTG CAA TACAGAACTAAGTCC TTTGTGTAAATTAAT stu1787 1591563 - 1592051 + | hypothetical protein TERM 2096 1592129 - 1592147 + T 100 -13.2 -4.25104 | opp_overlap 1592132 AAAAGCTTTTCGGAA CCACTAGC TGT GCTAGTGG TTTTCGTGAGAAAAA TERM 2097 1592184 - 1592167 - T 100 -6.3 -6.22802 | opp_overlap 1592167 CGTGAGAAAAAAAAA GAAGAGC CTAA ACTCTTC TTCCTATACAATTGA gapA1 1593238 - 1592201 - | glyceraldehyde-3-phosphate dehydrogenase TERM 2098 1593378 - 1593357 - R 73 -3.7 -5.1167 | AATGCAATAGAAAAA GGCACTTAC TTTC ATAAGCACC TTAACTTAAAAACTT fus 1595479 - 1593398 - | elongation factor G TERM 2099 1595562 - 1595542 - R 100 -9.7 -5.03715 | opp_overlap 1595542 ATTATTGTCAAAAAA CGGATAGGC AGG ACCTACCCG TTCTTCAATGATATT rpsG 1596170 - 1595700 - | 30S ribosomal protein S7 rpsL 1596602 - 1596189 - | 30S ribosomal protein S12 TERM 2100 1596457 - 1596473 + g 82 -6.5 -4.91109 | opp_overlap 1596457 1596469 GTCATTGTTCCAACA CGTGTTG CAA CACCACG TTTTTGTGGTGAAGA TERM 2101 1596811 - 1596790 - R 79 -4.5 -5.3104 | overlap 1596805 TTACCAAAAAGAAAA TTCCTAAAT ATTA AATTAGGAA TCCCAAATTTCAAGT tnp1239 1597872 - 1596832 - | IS1239 transposase TERM 2102 1596915 - 1596932 + g 74 -4.9 -4.81082 | gap 1, opp_overlap 1596915 AATTTTCGATAAAAG CGACTTCT TTC AGA-GTCG TTTTCTTGGTTCCTT TERM 2103 1597514 - 1597526 + g 70 -3.4 -4.96028 | ATTTTCTCTTTCATT TCCT TCGTT AGGA TTATTTTTTTTACCG TERM 2104 1597904 - 1597927 + r 75 -9.6 -2.74012 | opp_overlap 1597905, overlap 1597909 1597915 TGTTTTGTCAGCTAA ACCAAGGCTA TTAT TAGCCTTGGC TACTTAGCCTAATAG TERM 2105 1597926 - 1597905 - R 95 -13.1 -3.64703 | opp_overlap 1597904 1597909 1597915 GTTTTGTCAGCTAAA CCAAGGCTA TTAT TAGCCTTGG CTACTTAGCCTAATA purR 1598888 - 1598064 - | purine operon repressor TERM 2106 1598969 - 1598943 - R 84 -6 -5.31072 | opp_overlap 1598943 ATAATACAATAAAAA GCGAACATTT TTTCATT AAATGTTCAC TTACTTTCGCTTCTA cbf 1599935 - 1598982 - | CMP-binding factor stu1795 1601187 - 1599913 - | hypothetical protein TERM 2107 1600986 - 1601002 + g 89 -9.5 -4.14056 | GATAAAGTGCCACCT GCAATTG ATT CAATTGC TTTGTCGTTTCGAGT stu1796 1601821 - 1601189 - | hypothetical protein TERM 2108 1601799 - 1601769 - G 100 -13.4 -4.68479 | ACAAAATAATCAAAA TCGGTAGTGAACCA ATC TAGCTCACCACCGA CAAACAAAGCTATTT rpe 1602533 - 1601814 - | ribulose-phosphate 3-epimerase TERM 2109 1602095 - 1602071 - GR 73 -7.9 -3.83568 | TTACAGTCATAATAA GTACTTGATCC ACT AGAGCAAGTAC TGGAATAAGTGCCTC stu1798 1603353 - 1602481 - | ribosome-associated GTPase TERM 2110 1602778 - 1602768 - GR 71 -6.8 -4.07455 | opp_overlap 1602768 1602767 1602764 CATGAACATCATAAA GGCT TAC AGCC CTTGTTGTGTGACGA TERM 2111 1603601 - 1603581 - R 100 -14.1 -4.8048 | opp_overlap 1603581 TCCGCATAGCAAAAA TCCCACTGA CAT TCAGTGGGA TTTTTGAATTATAGA TERM 2112 1603581 - 1603601 + r 100 -14.1 -4.78149 | opp_overlap 1603581 TCCGCATAGCAAAAA TCCCACTGA CAT TCAGTGGGA TTTTTGAATTATAGA ksgA 1604482 - 1603610 - | dimethyladenosine transferase stu1800 1605187 - 1604627 - | topoisomerase/primase tatD 1605956 - 1605180 - | deoxyribonuclease, putative TERM 2113 1605996 - 1605976 - R 89 -7.5 -5.22006 | opp_overlap 1605974 1605976 1605977 1605979, overlap 1605977 CTATTATAACAAAAA GGAGCGAGC TTA GCTCACTCA TCTTTTCATTTTATT TERM 2114 1605977 - 1605995 + r 71 -8.8 -2.96499 | opp_overlap 1605976 1605977, overlap 1605976 1605974 1605979 TATTATAACAAAAAG GAGCGAGC TTA GCTCACTC ATCTTTTCATTTTAT TERM 2115 1605995 - 1605977 - R 90 -11 -3.72119 | opp_overlap 1605977 1605976 1605974 1605979, overlap 1605976 TATTATAACAAAAAG GAGCGAGC TTA GCTCACTC ATCTTTTCATTTTAT stu1802 1606462 - 1606010 - | hypothetical protein trxA1 1606815 - 1606501 - | thioredoxin TERM 2116 1607535 - 1607525 - g 73 -5.4 -4.57073 | CAGTTGGTCCAAAAA TTGG AAA CCAA GTAACACCAATTGAC TERM 2117 1607742 - 1607731 - g 70 -3 -5.07107 | opp_overlap 1607722 1607721 1607735 GAAATTGTTAAAAAA GTTA TTTT TAAC GTCTTTGATGATGAA stu1804 1607011 - 1607793 + | hypothetical protein TERM 2118 1607833 - 1607780 - T 81 -10.1 -3.44902 | gap 1, opp_overlap 1607782 1607798, overlap 1607781 1607798 ATATTTATCAAAAAC TTCTTGCAGAATAAAAAAGAAAATCA AAA TGATTTTCTTTTTTATTCTA-AAGTT AATTGTTCTTTTGAC TERM 2119 1607832 - 1607781 - T 89 -13.6 -2.66218 | gap 1, opp_overlap 1607782 1607798, overlap 1607780 1607798 TATTTATCAAAAACT TCTTGCAGAATAAAAAAGAAAATCA AAA TGATTTTCTTTTTTATTCTA-AAGT TAATTGTTCTTTTGA TERM 2120 1607782 - 1607831 + T 100 -14.9 -3.67945 | gap 1, opp_overlap 1607781 1607780 1607798, overlap 1607798 ATTTATCAAAAACTT CTTGCAGAATAAAAAAGAAAATCA AAA TGATTTTCTTTTTTATTCTA-AAG TTAATTGTTCTTTTG TERM 2121 1607816 - 1607798 - T 95 -9 -5.55769 | opp_overlap 1607782 1607798, overlap 1607781 1607780 TTGCAGAATAAAAAA GAAAATCA AAA TGATTTTC TTTTTTATTCTAAAG TERM 2122 1607798 - 1607816 + T 95 -9 -5.55769 | opp_overlap 1607798 1607781 1607780, overlap 1607782 TTGCAGAATAAAAAA GAAAATCA AAA TGATTTTC TTTTTTATTCTAAAG bta 1608589 - 1608254 - | bacteriocin transport accessory protein, putative TERM 2123 1608682 - 1608666 - R 100 -10.9 -5.48163 | AAACAAACCAAAAAA GCTAGAC AAT GTCTAGC TTAAAAAATTATACT TERM 2124 1608811 - 1608799 - R 80 -10.5 -3.09327 | CTACCGTATCTAACA GGGGG CAA CCCCC AACTACATCAGGCGT TERM 2125 1611534 - 1611549 + r 76 -7.6 -3.92604 | ATTACTCTCTTTGGC CTACCT TCCC AGGTAG TTCTTCTATAATCTT TERM 2126 1611591 - 1611610 + r 91 -12.2 -3.66803 | opp_overlap 1611590 1611589 TGCAGTCCTACAACC CCGAAGAG TAAA CTCTTCGG TTTGCCCTCTTGCCG TERM 2127 1613736 - 1613746 + r 71 -5.4 -4.52415 | overlap 1613734 1613739 1613740 GTTAACTCATTACCG TCGT CTG ACGA TTTATTCTTGTAAAT TERM 2128 1614409 - 1614391 - R 100 -8.9 -6.08342 | CAAGAAAGAAAAAAA GCAGTAC ATTCG GTACTGC TAAATAAATTATTTA tgt 1615564 - 1614422 - | queuine tRNA-ribosyltransferase TERM 2129 1615030 - 1615003 - G 70 -3.3 -4.90906 | opp_overlap 1615018, overlap 1614997 GTACAATACCAAAAA GCCCTTGATCG TGTGGC CGACGATGGGC TTTTAGTCCACGCTC tnp657 1616290 - 1615817 - | IS200 family transposase TERM 2130 1616422 - 1616380 - R 100 -18 -4.13728 | opp_overlap 1616392 GATACATCGCTAAAA GCTTTTCGAAAACCACTAGC ACA GCTAATGGTTTTCGAAAGAC AACAAAAAAGCAACA TERM 2131 1616392 - 1616410 + r 76 -7.4 -4.07568 | opp_overlap 1616380 AAAGCTTTTCGAAAA CCACTAGC ACA GCTAATGG TTTTCGAAAGACAAC TERM 2132 1616461 - 1616425 - R 79 -8.9 -3.81488 | opp_overlap 1616432, overlap 1616432 GTTTTCGAAAGACAA CAAAAAAGCAACAGT CTCGAGC ACTGTTGCTTTCATG AATGTCTTAAGCTGC TERM 2133 1616432 - 1616454 + r 73 -7.8 -3.79138 | opp_overlap 1616425 1616432 AAAGACAACAAAAAA GCAACAGT CTCGAGC ACTGTTGC TTTCATGAATGTCTT TERM 2134 1616454 - 1616432 - R 93 -7.8 -5.66338 | opp_overlap 1616432, overlap 1616425 AAAGACAACAAAAAA GCAACAGT CTCGAGC ACTGTTGC TTTCATGAATGTCTT rpmH 1616602 - 1616468 - | 50S ribosomal protein L34 TERM 2135 1617441 - 1617461 + r 80 -6.9 -4.57073 | opp_overlap 1617441 ATTGTCAAAAAAAAA CTAGCCTTA AAA TAAGACTAG TTTTTGCAAGCAATA TERM 2136 1617461 - 1617441 - R 100 -9.1 -6.07627 | opp_overlap 1617441 ATTGTCAAAAAAAAA CTAGCCTTA AAA TAAGACTAG TTTTTGCAAGCAATA jag 1618539 - 1617490 - | DNA/RNA-binding protein stu1810 1619357 - 1618551 - | cytochrome oxidase biogenesis (Oxa1) family protein, SpoIIIJ rnpA 1619807 - 1619472 - | ribonuclease P TERM 2137 1619883 - 1619860 - R 85 -6.6 -5.34055 | ATAAATAGCAAAAAA GCCCAAAACC TTAT GGTTAGGGGC TTAGAGACTTACTTG argH 1621367 - 1619892 - | argininosuccinate lyase TERM 2138 1621405 - 1621385 - R 76 -4 -5.37593 | opp_overlap 1621385 TTTTAAATGAAAAAA GCTAGATA TTTTT TGTCTAGC TTAGTTTGTCTCTCT argG 1622805 - 1621606 - | argininosuccinate synthase TERM 2139 1623106 - 1623069 - R 93 -9.3 -4.37092 | gap 1, opp_overlap 1623077, overlap 1623071 ATTTTTCTTATAAAA TG-CCAAAAGGCCTGTAC AAA GTACTGACCTTTTGAACA ACAGCATCCTCGGTA TERM 2140 1623103 - 1623071 - R 84 -12.1 -2.52946 | opp_overlap 1623077, overlap 1623069 TTTTCTTATAAAATG CCAAAAGGCCTGTAC AAA GTACTGACCTTTTGA ACAACAGCATCCTCG TERM 2141 1623460 - 1623440 - R 86 -6.1 -5.48063 | ACGTAACATAAAAAA GAGCCTAGA TAC CCCAAGCTC TTTAACTGACTTATA TERM 2142 1623679 - 1623702 + r 84 -3.8 -5.70829 | opp_overlap 1623683, overlap 1623683 GCTTATGTACATTCG AAAACCCAAC AAAT GTTGGGTTCG TTTTTTTATAGTGTT TERM 2143 1623683 - 1623698 + r 85 -9 -4.08806 | opp_overlap 1623683, overlap 1623679 ATGTACATTCGAAAA CCCAAC AAAT GTTGGG TTCGTTTTTTTATAG TERM 2144 1623698 - 1623683 - R 85 -9 -4.1721 | opp_overlap 1623683 1623679 ATGTACATTCGAAAA CCCAAC AAAT GTTGGG TTCGTTTTTTTATAG gltX 1625162 - 1623708 - | glutamyl-tRNA synthetase TERM 2145 1624770 - 1624786 + g 70 -9.5 -2.63089 | opp_overlap 1624770 1624783, overlap 1624769 1624767 1624784 AGTCATACCAAGGAA CTCGTTA ATA TAACGAG GTGTTTCACCTGCTG TERM 2146 1624786 - 1624770 - G 75 -9.5 -3.43338 | opp_overlap 1624769 1624767 1624770 1624784, overlap 1624783 AGTCATACCAAGGAA CTCGTTA ATA TAACGAG GTGTTTCACCTGCTG TERM 2147 1625332 - 1625313 - R 84 -5.6 -5.52986 | opp_overlap 1625313 ATTTTATCAAAAAAA CGACCACC TAAA GGTAGACG TTTTCGATAGTTTAC stu1815 1625976 - 1625503 - | oligopeptide ABC uptake transporter substrate-binding protein, truncated stu1816 1626398 - 1625973 - | oligopeptide ABC uptake transporter substrate-binding protein, truncated TERM 2148 1626477 - 1626462 - R 93 -7.6 -5.63103 | opp_overlap 1626462 GCTCAATTAAAAAAA CCTATC CGAA GATAGG TTTTTACTACTCTTA TERM 2149 1626462 - 1626477 + r 83 -7.6 -4.8083 | opp_overlap 1626462 GCTCAATTAAAAAAA CCTATC CGAA GATAGG TTTTTACTACTCTTA rplA 1627179 - 1626490 - | 50S ribosomal protein L1 rplK 1627704 - 1627279 - | 50S ribosomal protein L11 TERM 2150 1627449 - 1627490 + g 71 -6.5 -4.30844 | overlap 1627452 TACCTGAGCCTTTTT CAACACCTGCAGCTTTTTT CAAA AGAACAGCAGCTGGTGGTG TTTTAGTGATGAAAT stu1819 1627876 - 1628229 + | hypothetical protein TERM 2151 1628264 - 1628241 - T 79 -5.3 -5.16681 | opp_overlap 1628241, overlap 1628236 TTAAAAACAAGAAAA CTCAGCATA TTTTAG TAAGCTGAG TTTTTTACATTGAAT TERM 2152 1628241 - 1628264 + T 83 -6 -5.16572 | opp_overlap 1628241 1628236 TTAAAAACAAGAAAA CTCAGCATAT TTTA GTAAGCTGAG TTTTTTACATTGAAT TERM 2153 1628289 - 1628306 + T 83 -11.3 -2.85763 | opp_overlap 1628289, overlap 1628286 TTGAATTATAAAAAA GCAGGCA ATCA TGCCTGC TAAATTTTTAGATAT TERM 2154 1628306 - 1628289 - T 100 -11.3 -5.37345 | opp_overlap 1628286 1628289 TTGAATTATAAAAAA GCAGGCA ATCA TGCCTGC TAAATTTTTAGATAT stu1820 1628818 - 1628321 - | hypothetical protein TERM 2155 1628657 - 1628614 - G 79 -9.8 -3.63839 | overlap 1628610 TGACCAAAGAACGAA TCATATCTTCCGTAACACGA CCAC CCGCATTACGCAAAATATGA GCGTCACCTAGTGCC stu1821 1629186 - 1628986 - | hypothetical protein stu1822 1629410 - 1629180 - | hypothetical protein radA 1630997 - 1629750 - | DNA repair protein RadA dut 1631735 - 1631289 - | deoxyuridine 5'-triphosphate nucleotidohydrolase stu1825 1631913 - 1632329 + | oxidoreductase, putative, truncated stu1826 1632326 - 1632544 + | oxidoreductase, putative, truncated TERM 2156 1632731 - 1632719 - g 70 -3.4 -4.90136 | overlap 1632727 AATCAATATGAAAAA TTGG AAAAG CCAA AGAAGCCTTTGACCT TERM 2157 1632744 - 1632727 - g 74 -6.3 -4.31329 | overlap 1632719 TGAAAAATTGGAAAA GCCAAAG AAGC CTTTGAC CTTGAGGGTAACATT stu1827 1632572 - 1632799 + | oxidoreductase, putative, truncated stu1828 1632823 - 1633542 + | oxidoreductase, putative, truncated TERM 2158 1633554 - 1633574 + F 77 -4.7 -5.19212 | opp_overlap 1633554 CTAAGACTTGGAAAA GTTGGGACA AAA TATCCTAAC TTTTTTCATGGTCAT stu1829 1633749 - 1633931 + | formate/nitrite transporter family protein, truncated stu1830 1634019 - 1634450 + | formate/nitrite transporter family protein, truncated TERM 2159 1634536 - 1634548 + G 70 -2.7 -5.0538 | overlap 1634526 AACCATTGCAGTTGC GATTG ATT TAATC TTTTTTAAAGTCAAA stu1831 1634459 - 1634914 + | hypothetical protein TERM 2160 1635428 - 1635398 - g 72 -9 -3.33696 | opp_overlap 1635395 TGTTGTTCCAACTAA GGTCACTCGCTTAG TTG CTAAGCAAGTTGCC GAACTTTTAGACCAC gpsA 1635147 - 1636169 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 2161 1636879 - 1636869 - g 71 -6.8 -3.9978 | TTAGAAAATCAAGAA CCAG GTG CTGG GAATGAAGTCCAATT galU 1636188 - 1637102 + | UDP-glucose pyrophosphorylase TERM 2162 1637173 - 1637207 + T 100 -17.2 -3.68302 | opp_overlap 1637166 TAAAATATTAGGCGA CGGCCTTGTTCCTCAT TTC AAGAGGGGCAAGGCCG TTATTGCGCTCTTGA tnpSth1 1638034 - 1637165 - | IS3 familytransposase orf2 tnpSth1 1638789 - 1638049 - | IS3 familytransposase orf1 TERM 2163 1638800 - 1638743 - G 79 -10.1 -3.52874 | opp_overlap 1638743 1638755 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCATAATATTC TERM 2164 1638743 - 1638800 + g 84 -12.3 -2.97902 | opp_overlap 1638743, overlap 1638755 TTGGACATAATAAGA CTCCCCTTATAGTTTCTAGTGAAAA TTTTTATT TTTTCACTGTCCACTATAAGGGGAG TATATCATAATATTC stu1836 1639509 - 1638835 - | hypothetical protein stu1837 1640027 - 1639500 - | hypothetical protein TERM 2165 1640072 - 1640048 - R 72 -2.9 -5.23316 | opp_overlap 1640049, overlap 1640049 TATCATATCAAAAAA GCTACCAAA AATCAGA TTTGGTAGT TTTTTTAGCTTTGTC TERM 2166 1640049 - 1640071 + r 89 -6.4 -5.59564 | opp_overlap 1640048 1640049 ATCATATCAAAAAAG CTACCAAA AATCAGA TTTGGTAG TTTTTTTAGCTTTGT hipO3 1641229 - 1640096 - | aminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase TERM 2167 1640336 - 1640374 + g 77 -7.7 -4.16279 | gap 2, overlap 1640340 CATCAACTCTTTAGC CAAGGCTGGATTATTTTCC ACA GGGAGATAA-CCA-CCTTG TTTTAACATGATATC TERM 2168 1641296 - 1641276 - R 93 -11.2 -4.01137 | opp_overlap 1641270 1641278 1641280, overlap 1641268 TAGAGAATCTAGAAA TAGAGGCC TTACG GGCCTCTA CTATCAATATATTAC TERM 2169 1641278 - 1641294 + r 75 -10.1 -2.66559 | opp_overlap 1641268 1641276, overlap 1641270 1641280 GAGAATCTAGAAATA GAGGCCT TAC GGGCCTC TACTATCAATATATT dapD 1642006 - 1641308 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative TERM 2170 1641922 - 1641942 + g 85 -5.5 -5.19275 | opp_overlap 1641927 TTGCCAATTCCCCTT CAAAAGTTA CTT TAACATTTG TTTTCTTTTCTGCAT stu1840 1642496 - 1642092 - | hypothetical protein stu1841 1642861 - 1642490 - | hypothetical protein TERM 2171 1642960 - 1642943 - R 87 -6.3 -5.52384 | opp_overlap 1642943 TTCCCATCAAAAAAA TCCCAAC AACC GTTAGGA TTACTTATCATTTTT rrmA 1643794 - 1642961 - | rRNA (guanine-N1-)-methyltransferase stu1843 1644163 - 1644330 + | hypothetical protein TERM 2172 1644692 - 1644725 + T 75 -8.4 -3.76775 | gap 1, opp_overlap 1644698, overlap 1644698 CTCTAATCTCCCATT GA-AAAATGCAAGCT CTTTT GGCTTGCATTTTGTC TTTACATATCTTGCA TERM 2173 1644698 - 1644718 + T 83 -7.6 -4.80455 | opp_overlap 1644698, overlap 1644692 TCTCCCATTGAAAAA TGCAAGCT CTTTT GGCTTGCA TTTTGTCTTTACATA TERM 2174 1644718 - 1644698 - T 83 -6.9 -4.65895 | opp_overlap 1644698 1644692 TCTCCCATTGAAAAA TGCAAGC TCTTTTG GCTTGCA TTTTGTCTTTACATA stu1844 1645245 - 1644727 - | cytidine/deoxycytidylate deaminase family protein, putative TERM 2175 1644755 - 1644768 + g 81 -6.7 -4.67173 | opp_overlap 1644755 ACGACTTCTAATTTA GCCAA TCGT TTGGC TTCTTTTTTGCGTTC TERM 2176 1645365 - 1645345 - R 93 -8.3 -5.63504 | AAGGGTACAAAAAAA GCTAAGACG AAT CATCCTAGC TTCAAACACAATAGT TERM 2177 1645649 - 1645609 - R 100 -20.2 -3.90744 | opp_overlap 1645604 1645617 TTTCCTTCCAAACAA GTAATGCCTACTATAAAA GTAAT TTTTATAGTAGGCATTAC CCACCTATAGTTTAT ssbA 1646397 - 1646005 - | single-strand DNA-binding protein stu1846 1646829 - 1646602 - | transcriptional regulator, putative stu1847 1647875 - 1646844 - | hypothetical protein TERM 2178 1647552 - 1647537 - G 87 -3.3 -5.71712 | TGTCATATAAAAAAA TAGTG CAACCC CACTA CCTAGGAGACCTTCA TERM 2179 1648000 - 1647986 - R 91 -4.2 -5.95539 | opp_overlap 1647938 1647986 TGGCAAACAAAAAAA GCGG ATTATTA CCGC TTCTTCTCTTAATTA stu1848 1648636 - 1648013 - | phenylalanyl-tRNA synthetase-like protein trxA2 1648960 - 1648646 - | thioredoxin stu1850 1649250 - 1648957 - | hypothetical protein TERM 2180 1649038 - 1649053 + g 74 -4.7 -5.0065 | CTCTAAGACGATACC TCCTG TGAGCC CAGGA TTTTCTTTATCCGTA pepA 1649341 - 1650408 + | glutamyl-aminopeptidase proC 1650424 - 1651194 + | pyrroline-5-carboxylate reductase TERM 2181 1651236 - 1651189 - T 95 -8.9 -5.22039 | gap 2, opp_overlap 1651201 1651205, overlap 1651201 1651205 GCCAAAGCCAAAAAA CTATAGTAAAAATAAAGCTCGGA AAAT TCCGAGCTTTATTTG-A-TATAG GGCGCTAACAATTGC TERM 2182 1651201 - 1651226 + T 100 -14.9 -3.83026 | opp_overlap 1651189 1651201 1651205, overlap 1651205 AAACTATAGTAAAAA TAAAGCTCGGA AAAT TCCGAGCTTTA TTTGATATAGGGCGC TERM 2183 1651226 - 1651201 - T 100 -14.9 -4.85177 | opp_overlap 1651201 1651205, overlap 1651189 1651205 AAACTATAGTAAAAA TAAAGCTCGGA AAAT TCCGAGCTTTA TTTGATATAGGGCGC TERM 2184 1651205 - 1651222 + T 100 -11.3 -4.53602 | opp_overlap 1651201 1651189 1651205, overlap 1651201 TATAGTAAAAATAAA GCTCGGA AAAT TCCGAGC TTTATTTGATATAGG TERM 2185 1651222 - 1651205 - T 100 -11.3 -4.94262 | opp_overlap 1651205 1651201, overlap 1651201 1651189 TATAGTAAAAATAAA GCTCGGA AAAT TCCGAGC TTTATTTGATATAGG stu1853 1651886 - 1651224 - | hypothetical protein stu1854 1652437 - 1652108 - | hypothetical protein stu1855 1652990 - 1652511 - | hypothetical protein stu1856 1653388 - 1653179 - | transcriptional regulator TERM 2186 1653595 - 1653574 - R 77 -5.1 -5.13521 | AAAGCATTCAAAAAA GCTGGCCAA TTGC TCAGCCAAC TTTTCTGGTCTTATC ackA 1654845 - 1653625 - | acetate kinase stu1858 1655830 - 1654874 - | hypothetical protein stu1859 1656192 - 1655875 - | hypothetical protein stu1860 1656631 - 1656170 - | competence protein, putative stu1861 1656884 - 1656591 - | hypothetical protein comGD 1657284 - 1656856 - | competence protein comGC 1657570 - 1657244 - | late competence protein, exogenous DNA-binding protein comGB 1658673 - 1657567 - | late competence protein, ABC transporter subunit comGA 1659490 - 1658549 - | late competence protein, ABC transporter subunit TERM 2187 1659562 - 1659539 - R 100 -11.8 -4.78029 | opp_overlap 1659539 1659542 TTAAGAAAATGAAAA GAAGCCCGAA AAAA TTCGAGCTTC TACATTGTTTAACGT TERM 2188 1659539 - 1659562 + r 75 -9.6 -2.71369 | opp_overlap 1659539, overlap 1659542 TTAAGAAAATGAAAA GAAGCCCGAA AAAA TTCGAGCTTC TACATTGTTTAACGT stu1866 1659933 - 1659571 - | hypothetical protein TERM 2189 1660054 - 1660083 + r 74 -6.5 -4.45399 | opp_overlap 1660059, overlap 1660059 TGATGATATAAATAC AAAAAGAACCCAC ATTT GTGAGTTCTTTTG TTTTAGTATTAGTCT TERM 2190 1660078 - 1660059 - R 95 -8.6 -5.26155 | opp_overlap 1660054 1660059 ATATAAATACAAAAA GAACCCAC ATTT GTGAGTTC TTTTGTTTTAGTATT TERM 2191 1660059 - 1660078 + r 84 -6.4 -5.17488 | opp_overlap 1660059, overlap 1660054 ATATAAATACAAAAA GAACCCAC ATTT GTGAGTTC TTTTGTTTTAGTATT rpoC 1663730 - 1660092 - | DNA-directed RNA polymerase subunit beta' TERM 2192 1662816 - 1662834 + g 70 -8.8 -3.35679 | opp_overlap 1662815 ACCTGGTCCAGTAAT TGGACGAC CAC GACGTCCA TTATCAATAAGAGCG rpoB 1667412 - 1663831 - | DNA-directed RNA polymerase subunit beta pbp1B 1670197 - 1667774 - | penicillin-binding protein 1B TERM 2193 1670242 - 1670222 - H 73 -9.1 -2.79831 | overlap 1670227 TCAAGGCCTATTATA GCAAACTTT GAC AAAGCTTGC ATAGGGTTGCTTTCT TERM 2194 1670348 - 1670327 - g 70 -9.5 -2.52152 | overlap 1670326 1670324 AAGAACTAAAAGCAC GTGGCTTGA TTTT TCAAACCAC AGATGAAGAAGCCCT tyrS 1670239 - 1671555 + | tyrosyl-tRNA synthetase TERM 2195 1671569 - 1671587 + T 95 -8.9 -5.75342 | AATTTATGACCATTC TCACTCC CTAGT GGAGTGA TTTTTTTTACACACA TERM 2196 1671649 - 1671663 + T 80 -7.1 -4.61231 | opp_overlap 1671642 1671649 TAAGAACACAAAAAA CCAGC ACTAG GCTGG TTTTTGAGACTATCA TERM 2197 1671663 - 1671649 - T 93 -7.1 -5.55695 | opp_overlap 1671649, overlap 1671642 TAAGAACACAAAAAA CCAGC ACTAG GCTGG TTTTTGAGACTATCA ilvC 1672703 - 1671681 - | ketol-acid reductoisomerase ilvH 1673255 - 1672779 - | acetolactate synthase 3 regulatory subunit TERM 2198 1673138 - 1673158 + g 83 -12.7 -2.66787 | opp_overlap 1673134 1673131 GTGAAACATCAGGAT TTTCCGTTG CTC CAACGGAAA TACTCTCAATATTGA ilvB 1674966 - 1673248 - | acetolactate synthase catalytic subunit stu1874 1676572 - 1675082 - | dihydroxy-acid dehydratase, truncated TERM 2199 1676953 - 1676936 - R 93 -7.7 -5.65927 | TATTTAAACAAAAAA GGAAGCC CTAA GACTTCC AAAATGATTATTTTT stu1875 1678639 - 1676972 - | hypothetical protein asp 1679004 - 1678639 - | alkaline-shock protein norN 1680403 - 1679114 - | MATE family drug:Na+ antiporter TERM 2200 1680359 - 1680377 + g 79 -8.9 -3.81111 | TAAGAGGTTCTCAGC CATAGCC GGTAA GGCTATG TTTAAAATTTTCTTT TERM 2201 1680452 - 1680430 - R 77 -5.7 -4.89852 | gap 1, opp_overlap 1680430 TTATATCGATAAAAA TAGGA-CTGA TTTC TCAGCTCCTA TTTTTTTCTTATACA TERM 2202 1680430 - 1680452 + r 91 -5.7 -5.88565 | gap 1, opp_overlap 1680430 TTATATCGATAAAAA TAGGA-CTGA TTTC TCAGCTCCTA TTTTTTTCTTATACA thrC 1681945 - 1680461 - | threonine synthase TERM 2203 1682098 - 1682079 - R 77 -5 -5.10077 | overlap 1682070 AAATATCGGAAAAAA TCCGGAAT TTCT ATCCCAGA TTTTCTTTTAAAATT TERM 2204 1682522 - 1682503 - R 73 -3.6 -5.14563 | gap 1, opp_overlap 1682506, overlap 1682506 GCCTTTAGCAAAAAA GT-AGCCCT CAT AGAGCTTAC TTTAGGCTATCACTT stu1879 1682941 - 1682624 - | alcohol-acetaldehyde dehydrogenase, truncated stu1880 1683167 - 1682934 - | alcohol-acetaldehyde dehydrogenase, truncated stu1881 1683597 - 1683151 - | alcohol-acetaldehyde dehydrogenase, truncated stu1882 1684158 - 1683598 - | alcohol-acetaldehyde dehydrogenase, truncated TERM 2205 1683731 - 1683743 + g 70 -2.7 -5.06414 | TAAGTTATTGAATCT TTTTC GAA GAAGA TTTTTGTTGGGACAC stu1883 1684427 - 1684155 - | alcohol-acetaldehyde dehydrogenase, truncated stu1884 1685130 - 1684735 - | alcohol-acetaldehyde dehydrogenase, truncated TERM 2206 1685260 - 1685234 - R 100 -14.6 -4.97405 | opp_overlap 1685233 1685229 1685238 ATGGATAAAAATAAA GAAATCCGTCCA TTT TGGACAGATTTC ATCACTTTTTACCAA TERM 2207 1685238 - 1685256 + r 73 -7.4 -3.85891 | opp_overlap 1685234, overlap 1685233 1685229 ATAAAAATAAAGAAA TCCGTCCA TTT TGGACAGA TTTCATCACTTTTTA pepO 1687164 - 1685269 - | endopeptidase O TERM 2208 1686223 - 1686234 + g 80 -2.2 -5.56673 | overlap 1686223 AGGTCCTTGTGCCAA GTAG AAAG CTGC TTTTTTCTTATCCAT TERM 2209 1687237 - 1687209 - R 77 -6.2 -4.81212 | gap 1, opp_overlap 1687204 1687202, overlap 1687204 TTTATTATAACAAAA TTTCC-CAGCAAA AACA TTTACTGAGGAAA GTTTGTCTTATTTAA stu1886 1687904 - 1687245 - | trehalose-6-phosphate hydrolase, truncated stu1887 1688271 - 1687918 - | trehalose-6-phosphate hydrolase, truncated stu1888 1688585 - 1688439 - | trehalose-6-phosphate hydrolase, truncated stu1889 1688779 - 1688459 - | trehalose PTS trehalose component IIBC, truncated stu1890 1689175 - 1688810 - | trehalose PTS trehalose component IIBC, truncated TERM 2210 1689063 - 1689076 + g 70 -8.1 -3.72695 | opp_overlap 1689062 ATAATCGCAAAGATT CCCCA ATAT TGGGG TTTAATAGAGAGAAT stu1891 1689409 - 1689272 - | trehalose PTS trehalose component IIBC, truncated stu1892 1689521 - 1689679 + | trehalose operon transcriptional repressor stu1893 1689734 - 1690231 + | trehalose operon transcriptional regulator truncated TERM 2211 1690283 - 1690258 - T 100 -10.5 -5.1244 | opp_overlap 1690258 CGACCAACATAAAAA GTATCGGACAC ATAA ACGTCCGATAC TTTTTAGTTTTTACG TERM 2212 1690258 - 1690283 + T 100 -9.1 -5.18355 | opp_overlap 1690258 CGACCAACATAAAAA GTATCGGAC ACATAAAC GTCCGATAC TTTTTAGTTTTTACG stu1894 1690850 - 1690287 - | hypothetical protein stu1895 1691198 - 1690860 - | hypothetical protein TERM 2213 1691191 - 1691220 + g 70 -9.5 -2.6078 | opp_overlap 1691191 1691196, overlap 1691196 GATAGGGTCATAAAA TAAAACATGCCAT TATT ATAGCATGTTTTA TAGATTCATGTTAGT TERM 2214 1691220 - 1691191 - G 95 -11.7 -4.39426 | opp_overlap 1691191 1691196, overlap 1691196 GATAGGGTCATAAAA TAAAACATGCCAT TATT ATAGCATGTTTTA TAGATTCATGTTAGT TERM 2215 1691215 - 1691196 - G 90 -7.2 -5.18371 | opp_overlap 1691191 1691196, overlap 1691191 GGTCATAAAATAAAA CATGCCAT TATT ATAGCATG TTTTATAGATTCATG stu1896 1691587 - 1691231 - | hypothetical protein TERM 2216 1691544 - 1691527 - G 70 -7.7 -3.76969 | ATAACAATAAACCAA GTAGAGC AAGA GCTCCAC CACCAAAAAATACAG TERM 2217 1691737 - 1691724 - H 74 -3.1 -5.24129 | gap 1, opp_overlap 1691727 TTCTGCTACAAAAAA CG-AGG TCC CCTTCG GATCTTATTGCCATT stu1897 1691821 - 1691976 + | hypothetical protein stu1898 1692168 - 1692623 + | hypothetical protein TERM 2218 1692854 - 1692892 + T 79 -10.5 -2.9296 | opp_overlap 1692846 1692855 1692863, overlap 1692863 TTGACAATTCAAGAT ATGAAAAAACAAGATCC TTTCT GGATCTTGTTTTTACAG TCTAATTAAGCTTTG TERM 2219 1692891 - 1692855 - T 95 -14 -3.14978 | opp_overlap 1692854 1692863, overlap 1692846 1692863 TGACAATTCAAGATA TGAAAAAACAAGATCC TTTCT GGATCTTGTTTTTACA GTCTAATTAAGCTTT TERM 2220 1692883 - 1692863 - T 100 -9.8 -5.27399 | opp_overlap 1692863 1692854, overlap 1692855 CAAGATATGAAAAAA CAAGATCC TTTCT GGATCTTG TTTTTACAGTCTAAT TERM 2221 1692863 - 1692883 + T 100 -9.8 -4.65168 | opp_overlap 1692855 1692863, overlap 1692854 CAAGATATGAAAAAA CAAGATCC TTTCT GGATCTTG TTTTTACAGTCTAAT fba 1693779 - 1692898 - | fructose-bisphosphate aldolase TERM 2222 1693905 - 1693920 + r 73 -9 -3.25823 | opp_overlap 1693905 TTTAATATAAAAAAA CCAGTC TCTT GACTGG TTACTCTAGCGGAAA TERM 2223 1693920 - 1693905 - R 100 -9 -5.80817 | opp_overlap 1693905 TTTAATATAAAAAAA CCAGTC TCTT GACTGG TTACTCTAGCGGAAA TERM 2224 1694059 - 1694070 + r 71 -3 -5.04385 | opp_overlap 1694059, overlap 1694061 CAATCAATGTCAATA CTTT TTTG AAAG TTTTTTGAAAATCTC TERM 2225 1694138 - 1694155 + r 72 -2.7 -5.2696 | TTATTGTATGCTATT GTCAATA AGCT TTTTGAC TTTTTTAGCTTTTCC stu1900 1694803 - 1694198 - | glutamate--cysteine ligase, putative, truncated stu1901 1695049 - 1694861 - | glutamate--cysteine ligase, putative, truncated stu1902 1695256 - 1695110 - | glutamate--cysteine ligase, putative, truncated stu1903 1695538 - 1695353 - | glutamate--cysteine ligase, putative, truncated stu1904 1695618 - 1695773 + | hypothetical protein stu1905 1695965 - 1696420 + | hypothetical protein TERM 2226 1696703 - 1696659 - T 100 -17.5 -4.87807 | opp_overlap 1696659 1696694 1696701 TCAAGATATGAAAAA CGCCTGCTTACGAAAAATAAC AGT ATTATCTTTCGTAAACAAGCG TTACATGCTTATTTA TERM 2227 1696659 - 1696703 + T 83 -10.2 -3.17492 | opp_overlap 1696659, overlap 1696694 1696701 TCAAGATATGAAAAA CGCCTGCTTACGAAAAATAA CAGTA TTATCTTTCGTAAACAAGCG TTACATGCTTATTTA rplQ 1697221 - 1696835 - | 50S ribosomal protein L17 rpoA 1698177 - 1697239 - | DNA-directed RNA polymerase subunit alpha TERM 2228 1697705 - 1697715 + g 90 -3.2 -5.92399 | GCCAAAGTTCCCACT GGTG CAT CATC TTTTTTATTTTCTTC TERM 2229 1697878 - 1697894 + g 74 -5.2 -4.71318 | overlap 1697877 AACCTCAGCTGGACC TTGAAC ATCAA GTTCAA TTGTTTTTTCGTCTT rpsK 1698609 - 1698226 - | 30S ribosomal protein S11 rpsM 1699002 - 1698637 - | 30S ribosomal protein S13 rpmJ 1699136 - 1699020 - | 50S ribosomal protein L36 infA 1699380 - 1699162 - | translation initiation factor IF-1 adk 1700154 - 1699498 - | adenylate kinase TERM 2230 1700219 - 1700184 - R 100 -19.4 -3.53091 | opp_overlap 1700184 1700187, overlap 1700187 ATTTTTGTTTTTAAA TAACTCTATCAAGGTT GTTA AACCTTGATAGAGTTA TTTAAAAACAAAAGA TERM 2231 1700184 - 1700219 + r 100 -19.4 -3.53012 | opp_overlap 1700184 1700187, overlap 1700187 ATTTTTGTTTTTAAA TAACTCTATCAAGGTT GTTA AACCTTGATAGAGTTA TTTAAAAACAAAAGA TERM 2232 1700187 - 1700216 + r 100 -16.7 -3.90744 | opp_overlap 1700184 1700187, overlap 1700184 TTTGTTTTTAAATAA CTCTATCAAGGTT GTTA AACCTTGATAGAG TTATTTAAAAACAAA TERM 2233 1700216 - 1700187 - R 100 -16.7 -3.90744 | opp_overlap 1700187 1700184, overlap 1700184 TTTGTTTTTAAATAA CTCTATCAAGGTT GTTA AACCTTGATAGAG TTATTTAAAAACAAA TERM 2234 1700267 - 1700233 - R 85 -6.6 -5.2853 | gap 1, opp_overlap 1700235 1700236 TATTTAAAAACAAAA GAGAAGGGACAGAAA CTTACC TTTCTTTCCCT-CTC GATTGCTCATGAGAA secY 1701581 - 1700286 - | preprotein translocase subunit SecY rplO 1702038 - 1701598 - | 50S ribosomal protein L15 TERM 2235 1702163 - 1702122 - R 79 -8.9 -3.88498 | opp_overlap 1702123 1702127, overlap 1702123 CGCCTATACATGAAA TTCAGTTTAAGTCGTAAGG TAAC CCTCACGACTTAAATTAAT TTTTATTTAACGTCT TERM 2236 1702123 - 1702162 + r 100 -10.2 -5.28942 | opp_overlap 1702122 1702123, overlap 1702127 GCCTATACATGAAAT TCAGTTTAAGTCGTAAGG TAAC CCTCACGACTTAAATTAA TTTTTATTTAACGTC TERM 2237 1702162 - 1702123 - R 86 -12.4 -2.92777 | opp_overlap 1702123 1702127, overlap 1702122 GCCTATACATGAAAT TCAGTTTAAGTCGTAAGG TAAC CCTCACGACTTAAATTAA TTTTTATTTAACGTC TERM 2238 1702127 - 1702158 + r 100 -13.2 -3.98991 | opp_overlap 1702123 1702122, overlap 1702123 ATACATGAAATTCAG TTTAAGTCGTAAGG TAAC CCTCACGACTTAAA TTAATTTTTATTTAA rpmD 1702348 - 1702166 - | 50S ribosomal protein L30 rpsE 1702857 - 1702363 - | 30S ribosomal protein S5 TERM 2239 1702776 - 1702766 - G 76 -6.8 -4.36063 | ACAAGAGCAGCAAAA CGCA TGT TGCG TCCACCTTTTACAAC rplR 1703232 - 1702876 - | 50S ribosomal protein L18 TERM 2240 1703260 - 1703271 + r 72 -5.8 -4.2828 | TTAATTATAATGATT GCTC ATGA GAGC TTTTGGTAAGTGGGA rplF 1703858 - 1703322 - | 50S ribosomal protein L6 TERM 2241 1703572 - 1703592 + g 71 -9.7 -2.84422 | overlap 1703571 GTTCCTTGGAGTTGA GCACGGTAT CCT ACACCGTGC ATTTCAAGTTCTTTT TERM 2242 1703789 - 1703802 + g 79 -6.7 -4.56978 | opp_overlap 1703789, overlap 1703786 GTCCTTTAACAGTAA CAACG TTAT CGTTG TTTGTTATTTCAACA rpsH 1704383 - 1703985 - | 30S ribosomal protein S8 TERM 2243 1704438 - 1704452 + r 74 -6.4 -4.36903 | opp_overlap 1704438, overlap 1704439 CTTGCTAGTTAATGA TTGAGC TGG GCTCAG TTTGTGTTTAATACA TERM 2244 1704495 - 1704466 - R 74 -9.5 -3.01791 | opp_overlap 1704464 1704461, overlap 1704468 AGTTTGTGTTTAATA CATTCAACTTAGA AAAA TCTAACTTGAATG AATCATTATTTTACC rpsN 1704691 - 1704506 - | 30S ribosomal protein S14 rplE 1705251 - 1704709 - | 50S ribosomal protein L5 TERM 2245 1705282 - 1705298 + r 74 -2.2 -5.55769 | TTCCTTCGTGATTAG TCAAGC ACTTC GCCTGA TTTTTTGTTGTAACG rplX 1705583 - 1705278 - | 50S ribosomal protein L24 rplN 1706032 - 1705664 - | 50S ribosomal protein L14 rpsQ 1706317 - 1706057 - | 30S ribosomal protein S17 TERM 2246 1706356 - 1706386 + r 79 -5.6 -5.1848 | gap 1 TCTATTATTTAATTT CAGATTGCACAGT TTTAAT AC-GTGCAATTTG TTTTTTAACTTCGTT rpmC 1706551 - 1706345 - | 50S ribosomal protein L29 rplP 1706974 - 1706561 - | 50S ribosomal protein L16 rpsC 1707631 - 1706978 - | 30S ribosomal protein S3 rplV 1707988 - 1707644 - | 50S ribosomal protein L22 TERM 2247 1707946 - 1707924 - G 74 -9.2 -3.59107 | overlap 1707922 1707919 1707945 AGATCAAGAACAAGA CGTGTTTTAC GAG GTGAAACACG CACTGTACGAGCCAT rpsS 1708282 - 1708004 - | 30S ribosomal protein S19 rplB 1709209 - 1708376 - | 50S ribosomal protein L2 rplW 1709523 - 1709227 - | 50S ribosomal protein L23 rplD 1710146 - 1709523 - | 50S ribosomal protein L4 rplC 1710797 - 1710171 - | 50S ribosomal protein L3 TERM 2248 1710230 - 1710252 + g 79 -5.7 -4.9792 | gap 1, overlap 1710226 TCTTAGCACCTGGTA CGTTA-CCTT TGAT AAGGATAACG TTTTTCTCTGGGATA rpsJ 1711222 - 1710914 - | 30S ribosomal protein S10 TERM 2249 1711384 - 1711410 + r 74 -2.2 -5.43329 | AGAACCTATTCATTG CAAGGGATTTTT GAA AATTTTCCCTTG TTTTATTTTATTTTT TERM 2250 1711465 - 1711434 - R 93 -10.4 -4.06502 | opp_overlap 1711430 1711434 1711438, overlap 1711438 TATTTTTAAACTAAA TAAAGAATCCACCT TTCT AGATGAATTCTTTA TTAATTATCTCGAGT TERM 2251 1711461 - 1711438 - R 76 -6.8 -4.62772 | opp_overlap 1711434 1711430 1711438, overlap 1711434 TTTAAACTAAATAAA GAATCCACCT TTCT AGATGAATTC TTTATTAATTATCTC ruvB 1712467 - 1711466 - | Holliday junction DNA helicase B TERM 2252 1712540 - 1712522 - R 100 -10.4 -5.60993 | opp_overlap 1712522 TTGTCCACAAAAAAA GAAGACAA CTC TTGTCTTC TTTTTTATTATTTTT TERM 2253 1712522 - 1712540 + r 100 -10.4 -5.80727 | opp_overlap 1712522 TTGTCCACAAAAAAA GAAGACAA CTC TTGTCTTC TTTTTTATTATTTTT stu1937 1714371 - 1712548 - | hypothetical protein stu1938 1714778 - 1714368 - | hypothetical protein stu1939 1715209 - 1714775 - | protein-tyrosine phosphatase TERM 2254 1715477 - 1715458 - R 80 -2.8 -5.68438 | opp_overlap 1715462, overlap 1715461 1715462 TGACTAAAGAAAAAA GCACCTAG TTTC CTAGATTC TTTTTCTTCATTATT purA 1716783 - 1715491 - | adenylosuccinate synthetase TERM 2255 1716627 - 1716609 - G 82 -8.2 -4.63218 | opp_overlap 1716621 TCTCTGGGAAGAAAA CACCTGAT GGA ATCAAGTG CAATTTGAATTTCTT flaR 1717552 - 1717037 - | topology modulation protein TERM 2256 1717677 - 1717638 - H 86 -10.3 -3.58269 | gap 1, opp_overlap 1717645 1717650, overlap 1717641 1717642 1717650 TAATTCATGTTTAAA CAAGCAAAAAAAGCCTTG TAAAT CAAGGCTTTTCCTG-TTG TATTTAGATGCCCCC TERM 2257 1717675 - 1717641 - H 82 -8.7 -3.92542 | opp_overlap 1717645 1717650, overlap 1717638 1717642 1717650 TTCATGTTTAAACAA GCAAAAAAAGCCTTG TAAAT CAAGGCTTTTCCTGT TGTATTTAGATGCCC TERM 2258 1717674 - 1717642 - H 84 -12.2 -2.95204 | opp_overlap 1717645 1717650, overlap 1717641 1717638 1717650 TCATGTTTAAACAAG CAAAAAAAGCCTTG TAAAT CAAGGCTTTTCCTG TTGTATTTAGATGCC TERM 2259 1717650 - 1717666 + H 84 -8 -4.49167 | opp_overlap 1717642 1717641 1717638 1717650, overlap 1717645 AAACAAGCAAAAAAA GCCTTG TAAAT CAAGGC TTTTCCTGTTGTATT TERM 2260 1717666 - 1717650 - H 93 -8 -5.73672 | opp_overlap 1717650 1717645, overlap 1717642 1717641 1717638 AAACAAGCAAAAAAA GCCTTG TAAAT CAAGGC TTTTCCTGTTGTATT TERM 2261 1717848 - 1717838 - H 76 -2.6 -5.50313 | overlap 1717840 1717842 TATAAAATTAAAAAA TATA TAT TATA GAATGCTATAATAAA stu1942 1717892 - 1719097 + | hypothetical protein tnp1191 1720501 - 1719293 - | IS1191 transposase TERM 2262 1720470 - 1720524 + g 83 -5.3 -5.19879 | gap 1 GTAAACTGAGTCATA GGAATAAATCTCTTTCTAGTAATGTT TTGC AACTCTACTATAACG-GATTTATTCC TTTTTGTGTTTACAC TERM 2263 1720837 - 1720858 + H 84 -3.7 -5.59534 | overlap 1720834 TATTCAAAAGGTTAA CGCAGAC TGCATTAT GTTTGCG TTTTTTGTTATAATT TERM 2264 1720962 - 1720950 - g 81 -2.7 -5.56568 | AGATTATCAAAAAAA CTTTC ATT AAAAG ATGTTGCTGGTGATT stu1947 1720872 - 1721765 + | MutR family transcriptional regulator TERM 2265 1721829 - 1721782 - f 93 -9 -4.7254 | opp_overlap 1721782 1721787, overlap 1721787 ACTTTTTACTAAAAA TAAAATACTGCTGT-TACACTA GTTATA TAGT-TATACAGCAGTATTTTA TTTTTAATAGGAGAT TERM 2266 1721782 - 1721829 + F 93 -9 -4.7254 | opp_overlap 1721782 1721787, overlap 1721787 ACTTTTTACTAAAAA TAAAATACTGCTGT-TACACTA GTTATA TAGT-TATACAGCAGTATTTTA TTTTTAATAGGAGAT TERM 2267 1721787 - 1721824 + F 79 -4.5 -5.3104 | opp_overlap 1721782 1721787, overlap 1721782 TTACTAAAAATAAAA TACTGCTGT-TACACTA GTTATA TAGT-TATACAGCAGTA TTTTATTTTTAATAG TERM 2268 1721824 - 1721787 - f 79 -4.5 -5.3104 | opp_overlap 1721787 1721782, overlap 1721782 TTACTAAAAATAAAA TACTGCTGT-TACACTA GTTATA TAGT-TATACAGCAGTA TTTTATTTTTAATAG TERM 2269 1723914 - 1723903 - g 75 -3 -5.34632 | AACAAAATACAAAAA CTAT ATTG ATAG ACCCGATGTCCGAAG stu1948 1721850 - 1724009 + | hypothetical protein stu1949 1724014 - 1725582 + | micrococin J25 ABC exporter ATP binding/membrane protein TERM 2270 1725729 - 1725700 - f 72 -9.5 -2.68823 | opp_overlap 1725700 1725707, overlap 1725707 TCCTCTTGAGACAAG TAAAAAAGCCTTT ATTT AAAGGCTTTTTTT ATGTATAGTATGATG TERM 2271 1725707 - 1725722 + F 93 -7.6 -5.76633 | opp_overlap 1725700 1725707, overlap 1725700 GAGACAAGTAAAAAA GCCTTT ATTT AAAGGC TTTTTTTATGTATAG TERM 2272 1725722 - 1725707 - f 89 -7.6 -5.35354 | opp_overlap 1725707 1725700, overlap 1725700 GAGACAAGTAAAAAA GCCTTT ATTT AAAGGC TTTTTTTATGTATAG TERM 2273 1726629 - 1726617 - g 70 -3.4 -4.89009 | AGACGGAATGAAAAA GCTA TTAAT TAGC CAAATGGAAAAGAAG stu1950 1726501 - 1727199 + | MutR family transcriptional regulator , truncated TERM 2274 1727391 - 1727419 + G 100 -12.5 -4.8048 | overlap 1727393 GGTCGATAGCTTCTT CCGAGATGAGGAG TGA TTCCTCATCTCAG TTTTTAGTCTGGAGG TERM 2275 1727393 - 1727417 + G 91 -13.7 -2.68202 | overlap 1727391 TCGATAGCTTCTTCC GAGATGAGGAG TGA TTCCTCATCTC AGTTTTTAGTCTGGA stu1951 1727366 - 1728640 + | hypothetical protein stu1952 1728633 - 1730174 + | ABC exporter ATP binding/membrane-spanning protein TERM 2276 1730259 - 1730281 + F 77 -5.6 -4.90381 | AAAAGCTAACATCGA GAGAGGAC ACAATTC GTTCTCTC TTTTCTTATCTTCAA TERM 2277 1730463 - 1730442 - f 100 -10.9 -4.43477 | opp_overlap 1730429 TCTAGCCAAGCAAAA GCTGGCTAT TCTA ACAGCCAGC AAAAAGGTACACTTA rip 1730568 - 1731545 + | replication initiator protein stu1954 1731557 - 1731745 + | hypothetical protein TERM 2278 1731888 - 1731855 - g 100 -7.5 -6.09196 | opp_overlap 1731880, overlap 1731880 TTTAAAACAAAAAAA CTTGCAGAGTCAG AAGCTGAA CCGATTCTGCAAG AACTTCGTTTAGGAA TERM 2279 1732509 - 1732483 - g 95 -8.9 -5.45813 | gap 1 CACCAAAAAATAAAA CGTCTATTCGGA TGGT TCC-AATAGACG AAGAGTGTATCAAAA int 1731747 - 1732886 + | integrase/recombinase, phage associated TERM 2280 1732953 - 1732937 - T 90 -8 -5.3671 | opp_overlap 1732937 AAGACAAGCAAAAAA GCCTTG GTTAT CAAGGC TTTTACTGTTGAAGT TERM 2281 1732937 - 1732953 + T 89 -8.7 -4.43012 | opp_overlap 1732937 AAGACAAGCAAAAAA GCCTTGG TTA TCAAGGC TTTTACTGTTGAAGT cshA 1734597 - 1733329 - | recombination factor protein RarA TERM 2282 1734857 - 1734841 - g 74 -5.1 -4.71828 | ACGCTATGAACAAAA CTAAACG TGT CGTTAAG CCTAACCTTCAAAAA rpmB 1734768 - 1734956 + | 50S ribosomal protein L28 TERM 2283 1734967 - 1735002 + F 100 -17.2 -3.3062 | opp_overlap 1734967 1734969 1734973 1734975, overlap 1734975 TTTAATCTTATTAGA CATTAAGAGAGATGAC ATCA GTCATCTCTTTTAATG TTCATCGTCTTTCAC TERM 2284 1735002 - 1734967 - f 95 -15 -2.80994 | opp_overlap 1734967 1734975, overlap 1734969 1734973 1734975 TTTAATCTTATTAGA CATTAAGAGAGATGAC ATCA GTCATCTCTTTTAATG TTCATCGTCTTTCAC TERM 2285 1735000 - 1734969 - f 84 -11.8 -2.95223 | opp_overlap 1734967 1734975, overlap 1734967 1734973 1734975 TAATCTTATTAGACA TTAAGAGAGATGAC ATCA GTCATCTCTTTTAA TGTTCATCGTCTTTC TERM 2286 1734996 - 1734973 - f 72 -8.2 -3.3382 | opp_overlap 1734967 1734975, overlap 1734969 1734967 1734975 CTTATTAGACATTAA GAGAGATGAC ATCA GTCATCTCTT TTAATGTTCATCGTC TERM 2287 1734975 - 1734994 + F 100 -10.8 -4.44797 | opp_overlap 1734973 1734969 1734967 1734975, overlap 1734967 TATTAGACATTAAGA GAGATGAC ATCA GTCATCTC TTTTAATGTTCATCG TERM 2288 1734994 - 1734975 - f 86 -10.8 -3.23492 | opp_overlap 1734975 1734967, overlap 1734973 1734969 1734967 TATTAGACATTAAGA GAGATGAC ATCA GTCATCTC TTTTAATGTTCATCG stu1959 1735083 - 1735349 + | hypothetical protein stu1960 1735349 - 1735768 + | Holliday junction resolvase-like protein TERM 2289 1735996 - 1736006 + G 70 -5.4 -4.41494 | TGAAGAATTCGGTAA GAAC TAC GTTC TTTTGGTTCCAGCTG stu1961 1735847 - 1736182 + | hypothetical protein TERM 2290 1736256 - 1736230 - f 100 -15.4 -5.03314 | opp_overlap 1736230 TTTACTTCTAAAAAA GAGACTGAAATA GTT TATTTCAGTCTC TTTTTTAGACGGTTT TERM 2291 1736230 - 1736256 + F 100 -15.4 -5.03747 | opp_overlap 1736230 TTTACTTCTAAAAAA GAGACTGAAATA GTT TATTTCAGTCTC TTTTTTAGACGGTTT TERM 2292 1737138 - 1737158 + G 71 -3.9 -4.86001 | opp_overlap 1737122 1737133, overlap 1737141 CGTTTACAATCTTGT CAACAAGCA CTT TGCTCGTGG TTTTTATCAAGTCCT TERM 2293 1737943 - 1737922 - g 72 -8.9 -3.31248 | CAAGATTCTGCACAA TATCTTGTT GTCC AACAAGATA CGCAATTGCCTTCTG stu1962 1736395 - 1738041 + | hypothetical protein TERM 2294 1738050 - 1738093 + F 91 -2.6 -6.11644 | opp_overlap 1738050 AAAATAGGTCGAAAA TCAATATATAGTGGTTGA GATAAAAA TATACCACAATATATTGA TTTTTTTTTGCCTAG TERM 2295 1738187 - 1738174 - g 79 -3.1 -5.3658 | ATTAGAAAAAGAAAA GGTTA CAGT CAACC CCGATATCAAAGTTA nrdD 1738151 - 1740355 + | anaerobic ribonucleoside triphosphate reductase stu1964 1740457 - 1740588 + | hypothetical protein stu1965 1740590 - 1741090 + | acetyltransferase nrdG 1741095 - 1741700 + | anaerobic ribonucleotide reductase activator TERM 2296 1741727 - 1741707 - T 100 -12.7 -5.25699 | opp_overlap 1741707 ATGATATAAGAAAAA GTCTGAGTT TGT AACTCAGAC TTTTTTAACTTTTCT TERM 2297 1741707 - 1741727 + T 100 -12.7 -5.28315 | opp_overlap 1741707 ATGATATAAGAAAAA GTCTGAGTT TGT AACTCAGAC TTTTTTAACTTTTCT stu1967 1742489 - 1741722 - | hypothetical protein TERM 2298 1742305 - 1742316 + g 75 -5.8 -4.77775 | TGCTTTTCTTTCTCA GCCT GCTC AGGC TTTATTTTATAAGCT stu1968 1743490 - 1742549 - | hypothetical protein aspS 1745234 - 1743483 - | aspartyl-tRNA synthetase stu1970 1745766 - 1745344 - | hypothetical protein hisS 1747054 - 1745774 - | histidyl-tRNA synthetase stu1972 1748122 - 1747364 - | hypothetical protein stu1973 1748497 - 1748270 - | hypothetical protein rpmF 1748727 - 1748909 + | 50S ribosomal protein L32 rpmG 1748925 - 1749074 + | 50S ribosomal protein L33 TERM 2299 1749100 - 1749127 + T 70 -3.6 -4.88388 | gap 1, opp_overlap 1749100 1749106, overlap 1749106 CGAATCAATAGAAAA G-AAAAACGCT GATTTCA AGCGTTTTTTC TTTTTGTCAAATTCT TERM 2300 1749120 - 1749106 - T 80 -2.8 -5.60556 | opp_overlap 1749106 1749100, overlap 1749100 AATAGAAAAGAAAAA CGCT GATTTCA AGCG TTTTTTCTTTTTGTC TERM 2301 1749106 - 1749120 + T 91 -2.8 -5.98675 | opp_overlap 1749100 1749106, overlap 1749100 AATAGAAAAGAAAAA CGCT GATTTCA AGCG TTTTTTCTTTTTGTC stu1976 1749528 - 1749295 - | hypothetical protein stu1977 1749782 - 1749528 - | hypothetical protein stu1978 1750020 - 1749841 - | hypothetical protein stu1979 1750722 - 1750408 - | hypothetical protein stu1980 1751658 - 1751068 - | hypothetical protein stu1981 1752085 - 1751714 - | hypothetical protein TERM 2302 1752261 - 1752248 - H 71 -6.7 -4.21812 | opp_overlap 1752248 TCCTACTGAAAATAA CACAG TATC CTGTG TATCATTTAGACTTC TERM 2303 1752606 - 1752591 - H 77 -3.4 -5.49569 | opp_overlap 1752598, overlap 1752584 1752605 GATTAATATAAAAAA TATTTT AGCT AAAATA TAGCTCTTTAGATTG stu1982 1752674 - 1752913 + | hypothetical protein TERM 2304 1753090 - 1753103 + G 74 -5.3 -4.75063 | TTCATTTAGTTGATT GGAAT CAAA ATTCC TTTTTAGAATTTTAT TERM 2305 1753268 - 1753256 - g 76 -2 -5.46698 | CCTAAAATTAAAAAA TTCA GCTAT TGAA GGATTTGTACGTTGT stu1983 1752972 - 1753538 + | hypothetical protein stu1984 1753551 - 1753721 + | hypothetical protein tnp1239 1754805 - 1753765 - | IS1239 transposase TERM 2306 1753848 - 1753865 + g 74 -4.9 -4.81082 | gap 1, opp_overlap 1753848 AATTTTCGATAAAAG CGACTTCT TTC AGA-GTCG TTTTCTTGGTTCCTT TERM 2307 1754447 - 1754459 + g 70 -3.4 -4.96028 | ATTTTCTCTTTCATT TCCT TCGTT AGGA TTATTTTTTTTACCG TERM 2308 1754837 - 1754860 + H 75 -9.6 -2.74012 | opp_overlap 1754838, overlap 1754842 1754848 TGTTTTGTCAGCTAA ACCAAGGCTA TTAT TAGCCTTGGC TACTTAGCCTAATAG TERM 2309 1754859 - 1754838 - H 95 -13.1 -3.64703 | opp_overlap 1754837 1754842 1754848 GTTTTGTCAGCTAAA CCAAGGCTA TTAT TAGCCTTGG CTACTTAGCCTAATA stu1986 1754980 - 1755537 + | hypothetical protein stu1987 1755610 - 1755813 + | hypothetical protein TERM 2310 1756026 - 1756072 + T 85 -6.7 -5.25799 | opp_overlap 1756037 1756055 CTTCTGGTAGCATTA GCGCTCTAAAATCTGTAGTTT TGTTT AAACTATAGAAGCTAGAGTGC TTTTTATATTATTTT TERM 2311 1756117 - 1756100 - T 77 -3.4 -5.42198 | TTTTAAAAAACAAAA GCACAG ATTTTA CTGTAC CTCAGAATGAGGTTA TERM 2312 1756150 - 1756174 + T 100 -10.9 -5.4505 | opp_overlap 1756150 TAATTGAATTAAAAA GCCATGAAAAT ATT ATTTTTATGGC TTTTTTATTACCAAA TERM 2313 1756174 - 1756150 - T 95 -8.7 -4.90013 | opp_overlap 1756150 TAATTGAATTAAAAA GCCATGAAAAT ATT ATTTTTATGGC TTTTTTATTACCAAA stu1988 1756956 - 1756405 - | hypothetical protein stu1989 1757243 - 1757395 + | hypothetical protein TERM 2314 1757401 - 1757390 - f 82 -4.4 -5.44119 | opp_overlap 1757390 CCTATTCTAAAAAAA GCTT GAAA AAGC AGGCTATATGACCAC stu1990 1757409 - 1757570 + | hypothetical protein stu1991 1757776 - 1757997 + | hypothetical protein TERM 2315 1758410 - 1758392 - g 100 -6.8 -6.04324 | CCAAAAAATAAAAAA TACAATTG ACA CAACTGTA AAGGATGGTCAATTA stu1992 1758111 - 1758986 + | hypothetical protein TERM 2316 1759015 - 1758996 - T 93 -7.1 -5.55695 | opp_overlap 1758991 1758996 GAATAACATAAAAAA GCCAGCT CAAATT AGCCGGC TTTTAGTTTATACAT stu1993 1761155 - 1759023 - | hypothetical protein stu1994 1761393 - 1761133 - | hypothetical protein stu1995 1761522 - 1762061 + | TetR/AcrR family transcriptional regulator stu1996 1762501 - 1762139 - | hypothetical protein TERM 2317 1762878 - 1762843 - R 79 -9.9 -3.30218 | opp_overlap 1762846, overlap 1762846 CATAAGATAATGGAA CAAGCTCCTAGTC TAATACAAAT GACTAGGAGCTTA TTATGTTAGAAAACA TERM 2318 1762846 - 1762875 + r 85 -9.4 -3.9644 | opp_overlap 1762843 1762846 AAGATAATGGAACAA GCTCCTAGTC TAATACAAAT GACTAGGAGC TTATTATGTTAGAAA TERM 2319 1762875 - 1762846 - R 81 -9.4 -3.7744 | opp_overlap 1762846, overlap 1762843 AAGATAATGGAACAA GCTCCTAGTC TAATACAAAT GACTAGGAGC TTATTATGTTAGAAA TERM 2320 1763015 - 1762986 - R 78 -7.9 -4.17316 | opp_overlap 1762993, overlap 1762987 1762993 AGTCTTTTAAAACAA GCAAAAAGCCCAT AATA ACGGGCTTTTCGA TACAATAATATTAAA TERM 2321 1763014 - 1762987 - R 84 -11.4 -3.09908 | opp_overlap 1762993, overlap 1762986 1762993 GTCTTTTAAAACAAG CAAAAAGCCCAT AATA ACGGGCTTTTCG ATACAATAATATTAA TERM 2322 1763008 - 1762993 - R 84 -6.8 -5.07971 | opp_overlap 1762993, overlap 1762987 1762986 TAAAACAAGCAAAAA GCCCAT AATA ACGGGC TTTTCGATACAATAA rpsD 1763685 - 1763032 - | 30S ribosomal protein S4 stu1998 1764143 - 1763841 - | hypothetical protein TERM 2323 1764192 - 1764170 - R 72 -9.2 -2.6704 | TAAATCTGAAAGTTA CGATTCCTCA AAC TGAGCAATCG ATGAAAATTTATTAT holB 1765528 - 1764167 - | replicative DNA helicase rplI 1766030 - 1765572 - | 50S ribosomal protein L9 stu2001 1767996 - 1766032 - | hypothetical protein TERM 2324 1768049 - 1768034 - R 83 -4.7 -5.5208 | opp_overlap 1768034 TTATAACATAAAAAA GCCTT AATTAA AAGGC TTTTACAAGTGTTAC gidA 1770073 - 1768070 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 2325 1770094 - 1770037 - G 89 -9.3 -4.82901 | overlap 1770039 TTTTTCCTACAAAAA TAGTCAAAACTCTAGAAAACTGTACGC AAAA ACGCACAATTCCCATGAGCTTTGACCA TCATGACTATTGTTA TERM 2326 1770092 - 1770039 - G 86 -9.7 -4.03995 | overlap 1770037 TTTCCTACAAAAATA GTCAAAACTCTAGAAAACTGTACGC AAAA ACGCACAATTCCCATGAGCTTTGAC CATCATGACTATTGT trmU 1771367 - 1770246 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2327 1771496 - 1771530 + r 100 -10.3 -4.75288 | gap 1, opp_overlap 1771496 1771497 1771504, overlap 1771497 1771498 1771504 ATGATTAAAGAATAA TG-CAAAAAGGTTACC TAGT GGTAACCTTTTTGATA TTTATTTTCGTGTAA TERM 2328 1771528 - 1771496 - R 100 -11.6 -4.13206 | gap 1, opp_overlap 1771496 1771497 1771498 1771504, overlap 1771497 1771504 ATGATTAAAGAATAA TGCAAAAAGGTTACC TAGT GGTAACCTTTTTG-A TATTTATTTTCGTGT TERM 2329 1771528 - 1771497 - R 88 -13.2 -3.06839 | opp_overlap 1771497 1771496 1771498 1771504, overlap 1771496 1771504 TGATTAAAGAATAAT GCAAAAAGGTTACC TAGT GGTAACCTTTTTGA TATTTATTTTCGTGT TERM 2330 1771497 - 1771528 + r 100 -13.2 -3.98052 | opp_overlap 1771496 1771497 1771504, overlap 1771496 1771498 1771504 TGATTAAAGAATAAT GCAAAAAGGTTACC TAGT GGTAACCTTTTTGA TATTTATTTTCGTGT TERM 2331 1771498 - 1771527 + r 100 -16.7 -2.97205 | opp_overlap 1771496 1771497 1771504, overlap 1771497 1771496 1771504 GATTAAAGAATAATG CAAAAAGGTTACC TAGT GGTAACCTTTTTG ATATTTATTTTCGTG TERM 2332 1771504 - 1771521 + r 100 -9.9 -4.97461 | opp_overlap 1771496 1771497 1771504, overlap 1771498 1771497 1771496 AGAATAATGCAAAAA GGTTACC TAGT GGTAACC TTTTTGATATTTATT TERM 2333 1771521 - 1771504 - R 100 -9.9 -4.82333 | opp_overlap 1771504 1771498 1771497 1771496, overlap 1771496 1771497 AGAATAATGCAAAAA GGTTACC TAGT GGTAACC TTTTTGATATTTATT stu2004 1773236 - 1771506 - | hypothetical protein TERM 2334 1771953 - 1771938 - G 70 -3.2 -4.83759 | opp_overlap 1771940 1771941, overlap 1771940 AACTAAATTTAAAAA CTGTGA CAAG TCACTG TCATTCATGGTAAGA TERM 2335 1773311 - 1773292 - R 85 -6.4 -5.33026 | TAACCGAAATAAAAA GCTGAGAG ATAC CTCCCAAC TTCTATAAATCTTAG stu2005 1773952 - 1773323 - | hypothetical protein stu2006 1774747 - 1774193 - | hypothetical protein TERM 2336 1774552 - 1774568 + g 79 -5.1 -5.01732 | overlap 1774554 CAATATAAATCTTAT TAGCATC TTG GATGCCA TTTTTTGAGACGATT TERM 2337 1775001 - 1774982 - R 93 -8.6 -4.83269 | opp_overlap 1774985 AGATTAGACGAAAAA GAACGCCT ACGT AGACGTTC TTCAAATACTTCTAG TERM 2338 1775013 - 1775030 + r 100 -9.9 -5.30199 | opp_overlap 1775011 GTTCTTCAAATACTT CTAGGTC TTAA GACCTAG TTTTTATTCATTTTT stu2007 1775845 - 1775051 - | ABC transporter membrane-spanning protein stu2008 1776680 - 1775838 - | cobalt transporter ATP-binding subunit TERM 2339 1776639 - 1776614 - G 83 -7.5 -4.8048 | CTGTCATATCAAAAA GGGCACGCCTC TCAA AAGGAGTACCC GATTGATAGGTATAA stu2009 1777486 - 1776656 - | cobalt transporter ATP-binding subunit TERM 2340 1776727 - 1776737 + g 71 -4 -4.84529 | opp_overlap 1776727, overlap 1776733 AGCCTTCACAATCTA TCAA ACC TTGA TTTTTAAGTTTCTGA TERM 2341 1777457 - 1777469 + g 83 -3.5 -5.65927 | opp_overlap 1777457, overlap 1777466 TTGATCTTGATTATA TTTAA ATT TTAAA TTTTTTATTTCAATC pgsA 1778041 - 1777499 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase stu2011 1778911 - 1778054 - | hypothetical protein stu2012 1780247 - 1778970 - | peptidase TERM 2342 1779804 - 1779790 - G 70 -8.6 -3.428 | opp_overlap 1779793, overlap 1779793 AAATAAACTCTATAA TCAGGA TCA TCCTGA TACATGTTTATTTCT stu2013 1781499 - 1780249 - | protease, putative TERM 2343 1781259 - 1781280 + g 77 -8.8 -3.96298 | opp_overlap 1781258 1781255 CTATGTCAACACTAT GTGTCAAC CCTTTT GTTGACAC TTTAGTTGATAACTG TERM 2344 1781943 - 1781926 - g 93 -5.6 -5.62288 | GTAATAAAACAAAAA GGAAAC CTGTCC GTTTCC CAGGAATCTAACCAT stu2014 1781577 - 1781954 + | hypothetical protein TERM 2345 1781983 - 1781973 - g 71 -4 -5.00616 | TGTGGCTTGAAAAAA TTGA TAT TCAA CACTTTAGAAATTAT recF 1781957 - 1783057 + | recombination protein F TERM 2346 1783185 - 1783223 + T 100 -14.1 -4.26903 | gap 1, opp_overlap 1783193, overlap 1783186 AATGTAAATATTGAT G-CACAAAAGTACTTGCC TCTT GGCAAGTACTTCTGTGTC TTTTAATGAGCTGAA TERM 2347 1783186 - 1783221 + T 100 -17.8 -3.73756 | opp_overlap 1783193, overlap 1783185 ATGTAAATATTGATG CACAAAAGTACTTGCC TCTT GGCAAGTACTTCTGTG TCTTTTAATGAGCTG TERM 2348 1783214 - 1783193 - T 100 -13.1 -4.431 | opp_overlap 1783186 1783185 TATTGATGCACAAAA GTACTTGCC TCTT GGCAAGTAC TTCTGTGTCTTTTAA guaB 1784707 - 1783226 - | inositol-5-monophosphate dehydrogenase TERM 2349 1784987 - 1784964 - H 75 -9.6 -2.74012 | opp_overlap 1784965, overlap 1784950 1784969 CTATTAGGCTAAGTA GCCAAGGCTA ATAA TAGCCTTGGT TTAGCTGACAAAACA TERM 2350 1784965 - 1784986 + H 95 -13.1 -3.64703 | opp_overlap 1784950 1784964 1784969 TATTAGGCTAAGTAG CCAAGGCTA ATAA TAGCCTTGG TTTAGCTGACAAAAC TERM 2351 1785377 - 1785365 - g 70 -3.4 -4.96028 | CGGTAAAAAAAATAA TCCT AACGA AGGA AATGAAAGAGAAAAT TERM 2352 1785976 - 1785959 - g 74 -4.9 -4.81082 | gap 1, opp_overlap 1785959 AAGGAACCAAGAAAA CGAC-TCT GAA AGAAGTCG CTTTTATCGAAAATT tnp1239 1785019 - 1786059 + | IS1239 transposase TERM 2353 1786092 - 1786118 + T 100 -19.6 -5.47159 | opp_overlap 1786092 GGTTCCAAACAAAAA TAGGGGTCCAGA TTA TCTGGACCCCTA TTTTTATTTCTTAGA TERM 2354 1786118 - 1786092 - T 100 -19.6 -5.27335 | opp_overlap 1786092 GGTTCCAAACAAAAA TAGGGGTCCAGA TTA TCTGGACCCCTA TTTTTATTTCTTAGA trpS 1787151 - 1786129 - | tryptophanyl-tRNA synthetase II TERM 2355 1787201 - 1787176 - H 84 -6.8 -5.0916 | opp_overlap 1787176, overlap 1787177 TCTCTAATATAAAAA TCCCCACGCA AAAATA TGCGTGAGGG CGTTAATCACTTTTG TERM 2356 1787200 - 1787177 - H 86 -10.3 -3.64773 | opp_overlap 1787176, overlap 1787176 CTCTAATATAAAAAT CCCCACGCA AAAATA TGCGTGAGG GCGTTAATCACTTTT stu2019 1788017 - 1788451 + | hypothetical protein TERM 2357 1789385 - 1789358 - g 73 -7.8 -3.92659 | overlap 1789352 1789361 GCTTCAAAATCTAAA CAAGCAACTTCT CGTA AGAAAATGCTTG ATAAAATTGAGCTAG stu2020 1788518 - 1790140 + | ABC transporter ATP-binding protein TERM 2358 1790178 - 1790151 - f 79 -5.7 -5.05228 | gap 2, opp_overlap 1790154 1790155, overlap 1790153 1790154 ATTAAACTATAAAAA GATGCAGGTTGGG ATAT CCCAACCTG--TC TTATTATCATTATGA TERM 2359 1790178 - 1790153 - f 78 -7.5 -4.13732 | opp_overlap 1790154 1790155, overlap 1790151 1790154 TAAACTATAAAAAGA TGCAGGTTGGG ATAT CCCAACCTGTC TTATTATCATTATGA TERM 2360 1790177 - 1790154 - f 83 -11 -3.06613 | opp_overlap 1790154 1790155, overlap 1790151 1790153 AAACTATAAAAAGAT GCAGGTTGGG ATAT CCCAACCTGT CTTATTATCATTATG TERM 2361 1790154 - 1790178 + F 93 -10.8 -3.91357 | gap 1, opp_overlap 1790154 1790151 1790153, overlap 1790155 AAACTATAAAAAGAT G-CAGGTTGGG ATAT CCCAACCTGTC TTATTATCATTATGA TERM 2362 1790155 - 1790176 + F 100 -14.5 -3.53597 | opp_overlap 1790154 1790151 1790153, overlap 1790154 AACTATAAAAAGATG CAGGTTGGG ATAT CCCAACCTG TCTTATTATCATTAT TERM 2363 1792512 - 1792502 - g 75 -2.6 -5.23316 | overlap 1792484 TACTACATCAAAAAA TAAA GTA TTTA CTGATTATAGTAGCC stu2021 1790190 - 1792796 + | ABC transporter membrane-spanning protein TERM 2364 1792837 - 1792800 - T 100 -13.7 -5.27335 | opp_overlap 1792800 1792801 1792807, overlap 1792801 CGCCCTAAATAAAAA CCTAAAAGGTCTAGAAC AAAT GTTATAGACCTTTTAGA TTTAGGGTACAAAAA TERM 2365 1792800 - 1792837 + T 90 -11.5 -3.59979 | opp_overlap 1792800 1792801, overlap 1792801 1792807 CGCCCTAAATAAAAA CCTAAAAGGTCTAGAAC AAAT GTTATAGACCTTTTAGA TTTAGGGTACAAAAA TERM 2366 1792836 - 1792801 - T 100 -15 -3.75678 | opp_overlap 1792800 1792801 1792807, overlap 1792800 GCCCTAAATAAAAAC CTAAAAGGTCTAGAAC AAAT GTTATAGACCTTTTAG ATTTAGGGTACAAAA TERM 2367 1792801 - 1792836 + T 95 -15 -2.75844 | opp_overlap 1792801 1792800, overlap 1792800 1792807 GCCCTAAATAAAAAC CTAAAAGGTCTAGAAC AAAT GTTATAGACCTTTTAG ATTTAGGGTACAAAA TERM 2368 1792807 - 1792830 + T 83 -8.2 -4.35926 | opp_overlap 1792801 1792800, overlap 1792801 1792800 AATAAAAACCTAAAA GGTCTAGAAC AAAT GTTATAGACC TTTTAGATTTAGGGT TERM 2369 1792874 - 1792855 - T 93 -7.2 -5.626 | opp_overlap 1792855 TAGGGTACAAAAAAA CTCAAGCT ATAC AACTTGAG GTGTCTTATCACTCC TERM 2370 1793349 - 1793326 - T 95 -9 -5.23316 | gap 1, opp_overlap 1793326 GATCAGATGAAAAAA CGCAATCTAGA ATC TCTAG-TTGCG TTTTTCTTTTGCTTC TERM 2371 1793326 - 1793349 + T 95 -9 -5.54338 | gap 1, opp_overlap 1793326 GATCAGATGAAAAAA CGCAATCTAGA ATC TCTAG-TTGCG TTTTTCTTTTGCTTC stu2022 1794024 - 1793341 - | hypothetical protein TERM 2372 1793833 - 1793817 - G 91 -2.3 -6.11392 | opp_overlap 1793821, overlap 1793821 AAATAAAGAAAAAAA TAGGTAT TGC ATAGCTA AAAGCTCTTGCAATA stu2023 1794537 - 1794040 - | SPOUT methyltransferase superfamily protein TERM 2373 1794630 - 1794656 + H 79 -5.2 -5.10497 | overlap 1794633 CATCTACAATTTTTT CACTTATCCACA GAC TGTTGATAACTG TTTTTTAAATCACTT TERM 2374 1795942 - 1795913 - g 84 -6.6 -4.95302 | GTAAAGATAAGAAAA CTGTAGATCTTA AATTAA CAAAATCTACAG AAGACATATCTGATT htrA 1794724 - 1795959 + | exported serine protease TERM 2375 1796004 - 1795981 - f 100 -12.6 -4.13343 | opp_overlap 1795981 ACAAATCTGTCAAAA GACCTTTACA ATAA TGTAAAGGTC TTTTTTGGGAAAGGA TERM 2376 1795981 - 1796004 + F 100 -12.6 -5.00616 | opp_overlap 1795981 ACAAATCTGTCAAAA GACCTTTACA ATAA TGTAAAGGTC TTTTTTGGGAAAGGA TERM 2377 1796549 - 1796584 + G 79 -10.6 -3.18849 | opp_overlap 1796551, overlap 1796548 1796551 TTCTCGAAAGCAGTT AACCATCTTTCAGC AGGTTGTG GCTGAAAGATGGTC TGTTCGTACTCTAGA TERM 2378 1796551 - 1796582 + G 91 -13.2 -3.15407 | opp_overlap 1796551, overlap 1796549 1796548 CTCGAAAGCAGTTAA CCATCTTTCAGC AGGTTGTG GCTGAAAGATGG TCTGTTCGTACTCTA TERM 2379 1796582 - 1796551 - g 91 -13.2 -3.1634 | opp_overlap 1796549 1796548 1796551 CTCGAAAGCAGTTAA CCATCTTTCAGC AGGTTGTG GCTGAAAGATGG TCTGTTCGTACTCTA TERM 2380 1796626 - 1796607 - g 86 -2.2 -5.94713 | gap 1, overlap 1796608 ACTCTAGAAAAAAAA CTTC-AGGA ACT TCCTAGAAA ACAAAAATCTAAAAA spoJ 1796025 - 1796792 + | chromosome segregation protein